Prediction of potential genes in microbial genomes Time: Thu May 26 06:44:19 2011 Seq name: gi|289558786|gb|ADCD01000001.1| Micrococcus luteus SK58 ctg1119142780275, whole genome shotgun sequence Length of sequence - 6535 bp Number of predicted genes - 8, with homology - 7 Number of transcription units - 5, operones - 3 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 3 - 518 295 ## COG1165 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase 2 1 Op 2 . + CDS 563 - 1225 445 ## Mlut_09400 hypothetical protein 3 2 Op 1 8/0.000 - CDS 1212 - 1556 320 ## COG1687 Predicted branched-chain amino acid permeases (azaleucine resistance) 4 2 Op 2 . - CDS 1553 - 2452 658 ## COG1296 Predicted branched-chain amino acid permease (azaleucine resistance) - TRNA 2464 - 2540 85.1 # Val TAC 0 0 5 3 Op 1 . - CDS 2556 - 3173 62 ## Mlut_09360 peroxiredoxin 6 3 Op 2 . - CDS 3055 - 3486 289 ## Mlut_09350 hypothetical protein 7 4 Tu 1 . - CDS 3615 - 4202 137 ## 8 5 Tu 1 . + CDS 3897 - 6491 2512 ## COG2609 Pyruvate dehydrogenase complex, dehydrogenase (E1) component Predicted protein(s) >gi|289558786|gb|ADCD01000001.1| GENE 1 3 - 518 295 171 aa, chain + ## HITS:1 COG:Cgl0460 KEGG:ns NR:ns ## COG: Cgl0460 COG1165 # Protein_GI_number: 19551710 # Func_class: H Coenzyme transport and metabolism # Function: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase # Organism: Corynebacterium glutamicum # 8 136 415 542 543 83 46.0 2e-16 AAGVALARGRRTVALLGDLTALHEAGGLLVGPTETEPDLDLVVVNDDGGAIFASLEHGAV AEAPGMADPVERLFGTPHGVDLAALAAAYGVPHTRVTDRVDLVRALSDPVRGRRLLEVRC DRADRPRVAAALAAAVRATFPPACPVPDRAPDAGPAPAPPTAELAAEEAPQ >gi|289558786|gb|ADCD01000001.1| GENE 2 563 - 1225 445 220 aa, chain + ## HITS:1 COG:no KEGG:Mlut_09400 NR:ns ## KEGG: Mlut_09400 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 27 220 1 194 194 279 92.0 6e-74 MRRADVLISGCGPAGATAPGMREGGPMGLLRDLLTRRSARDRPSDPTATLGRHLDHAAAI VAAARRADVPLAVAAALAELESGGRNVFGHDAGGVHSAPRGTDIPVTRERYEELVARVAQ GEKSNGVGPAQITWPPYFAQAAERGLRLWELEDNLVFGLEVLRGHLGGDLSAEGIARAGT LYNAGTLADGVTAYGRRLAAATRAWAERLGEPAPPPVRPG >gi|289558786|gb|ADCD01000001.1| GENE 3 1212 - 1556 320 114 aa, chain - ## HITS:1 COG:Cgl0260 KEGG:ns NR:ns ## COG: Cgl0260 COG1687 # Protein_GI_number: 19551510 # Func_class: E Amino acid transport and metabolism # Function: Predicted branched-chain amino acid permeases (azaleucine resistance) # Organism: Corynebacterium glutamicum # 7 113 8 107 108 67 46.0 5e-12 MTGAAYLVAVAVVAGLVTFCLRALPFALLQPLRESVLAARLAVWMPAGVLTILALVMLLD AAALAPGEPVDGTRVAHALIAAAVTVVVHLLAGRRTLVSIAAGTLAYVLLVNLA >gi|289558786|gb|ADCD01000001.1| GENE 4 1553 - 2452 658 299 aa, chain - ## HITS:1 COG:Cgl0259 KEGG:ns NR:ns ## COG: Cgl0259 COG1296 # Protein_GI_number: 19551509 # Func_class: E Amino acid transport and metabolism # Function: Predicted branched-chain amino acid permease (azaleucine resistance) # Organism: Corynebacterium glutamicum # 40 260 16 230 239 209 52.0 5e-54 MTWRDALTCHVAGPPSACETMLTIMSSSPESSRVPVPPSRWAEVRSGVAVTLGAGLGLFP LGMAFGMLVVQAGLPAWVAPLFSVVVFAGSVELLLVSLVVAGTPLLTIAVTVFLVNFRHV FYAFSFPLRVVRGRLARIYSMGALIDEAYAIAAAQPRGWTGPRLVAMQVALQAYWVLGGL AGVAVAWLLPGPVEGLEFALVALFIVLAMDAARTRAQLPLVLAAAVAVGVALLVAPAQVL VVAFALYAAVLIAFHVLAARGTALPLPEPMPVTGPVPVVAVAGERAVTDAAPDAEEDPR >gi|289558786|gb|ADCD01000001.1| GENE 5 2556 - 3173 62 205 aa, chain - ## HITS:1 COG:no KEGG:Mlut_09360 NR:ns ## KEGG: Mlut_09360 # Name: not_defined # Def: peroxiredoxin # Organism: M.luteus # Pathway: not_defined # 38 205 1 168 168 259 91.0 5e-68 MSARRTSPRPPPPRACTPPPGPAPPRTGPLRNSSRSAVAEPPSGGTRGADVVPALRDDHG QRWPWPPTRGPEDAAAPRGTWLVFLPGAFTPVCTDELGWIGALAEDVAVDEVAVRVVACD AAPVLRRVREELALPEPLTLLSDFWPHGAACRALDVFDAETGRPRRVSVLLDADGVEAAR VVAAPGRARARGEHEAATRDLLAHR >gi|289558786|gb|ADCD01000001.1| GENE 6 3055 - 3486 289 143 aa, chain - ## HITS:1 COG:no KEGG:Mlut_09350 NR:ns ## KEGG: Mlut_09350 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 143 1 143 143 221 97.0 6e-57 MQAGSTPTSTDSALLAELALSRGDLVQEWGYDDDVDFTFRDALEDALGEELLTEDDQEPA DAVLFWWRADDGDVTDLADALVDAQRSLDAGPVWIMTPRKGRAGHVSPADVAEAASTAGL HATTGAGASEDWAAQKLVQKRGG >gi|289558786|gb|ADCD01000001.1| GENE 7 3615 - 4202 137 195 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MALEEDVVAAARVVLAAEEVVQAHLVEGRLARVGGDVAADADGVALGALHEGHGVPAQVV SVAALELLVARVLRLLVRRDRVHVVRGGHVGQGDGLGARALHEGAHDVLRPLRAALLDES VEGLDPLRRLLRILVRELVGQTAADLRALFGCAHGASWFSCGGVLRGGLRADDPVRARDA EPGASPGECVCSSPE >gi|289558786|gb|ADCD01000001.1| GENE 8 3897 - 6491 2512 864 aa, chain + ## HITS:1 COG:Cgl2195 KEGG:ns NR:ns ## COG: Cgl2195 COG2609 # Protein_GI_number: 19553445 # Func_class: C Energy production and conversion # Function: Pyruvate dehydrogenase complex, dehydrogenase (E1) component # Organism: Corynebacterium glutamicum # 1 851 63 909 922 1164 66.0 0 MQRASAQSVALPYVTTTDYVNTIPADQEPEYPGDEELERRYRNYLRWNAMALVQRAQRDA VGVGGHISSYAGQATLYEVGLNHFFRGQDHPGGGDHIFFQGHSSPGNYARAFLEGRLTEQ DLDGFRQEKSRQGHALPSYPHPRMMPHFWQYPTVSMGLGPMNAIFQAQTNRYLHNNGIKD TSDQHVWAFLGDGEMDEPESRGQLHIAANDKLDNLTFVINCNLQRLDGPVRGNGKIVQEL ESYFRGAGWNVIKVLWGREWDPLLEVDDEGELVRIMNETLDGDYQTYKAESGGFVRDHFF GRSSVTKEMVADMTDDEIWGLKRGGHDYKKVYAAYKAAMEHKGQPTVILAHTIKGYGLGK SFEGRNATHQMKKLTVDDLKVFRDRHRIPISDEQIEKDPYNIPYYHPGADAPEIRYMMER RRELGGFVPERRSDYHAIPLPPESAYKQARKGSGKQQAATTMAFVRLLKDLMRDKNMGPR FVPIIPDEARTFGMDSFFPTAKIYNPKGQNYLSVDRDLFLSYKESPQGKIYHVGINEDGA TAAFNAIGTSYSTHGEPMIPVYIFYSMFGFQRTADNIWAAGDQLARGFMIGATAGRTTLA GEGTQHMDGHSPVLASTNPAVKHYDPAYSYEIAHIVRQGLEDMYGDHDRGDDVRNVIYYL TVYNEPITHIEEPEGLDVEGLLKGIYRLSEGQGDGPKVQLLGSGVSVPWALDAQRILSEE WGVNASVWSVTSYNELYRDAVAAEKDALKDPSATPRVPYVTQALQGAEGPIVATSDYSTS WTNQIRPFVPNRFSALGADEFGFADTRAAARRYFLIDTHSMVVRALQLLEEEGEVERGTA AKAHEKYRLDDVNAGTTGSAGGDA Prediction of potential genes in microbial genomes Time: Thu May 26 06:44:40 2011 Seq name: gi|289558783|gb|ADCD01000002.1| Micrococcus luteus SK58 ctg1119142780224, whole genome shotgun sequence Length of sequence - 1088 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 3 - 528 426 ## Mlut_12320 CBS domain-containing protein 2 1 Op 2 . - CDS 540 - 953 322 ## COG0319 Predicted metal-dependent hydrolase Predicted protein(s) >gi|289558783|gb|ADCD01000002.1| GENE 1 3 - 528 426 175 aa, chain - ## HITS:1 COG:no KEGG:Mlut_12320 NR:ns ## KEGG: Mlut_12320 # Name: not_defined # Def: CBS domain-containing protein # Organism: M.luteus # Pathway: not_defined # 1 175 1 175 441 265 97.0 7e-70 MLTPALLFALFLVFLGLTWTLSLAESAFSYLSRRDAEDIVREQPGSKALEIARERESHLG ALRVWRFVAEALSAVCLTAAADAVVDDTWLAVAIAAVVLVGVAALLGVWSPRPIGSRNEA AVARRLGGLVWVLRRALGPLAARLDRDRRRREVEPEDEDDFQERHLREFVARAHD >gi|289558783|gb|ADCD01000002.1| GENE 2 540 - 953 322 137 aa, chain - ## HITS:1 COG:MT2436 KEGG:ns NR:ns ## COG: MT2436 COG0319 # Protein_GI_number: 15841879 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase # Organism: Mycobacterium tuberculosis CDC1551 # 1 124 21 147 177 120 59.0 5e-28 MARHVYTRLHVHERAETAVTVVDAARMAELHEEWMDLPGPTDVMSLPMDELTPGSPEAPA EGVLGDVVLCPEVAAEQAARGGHSRDDELLLLLTHGMLHLLGYDHLEDADREEMFGLQDR LVSEVLGRPAPAPTVED Prediction of potential genes in microbial genomes Time: Thu May 26 06:44:57 2011 Seq name: gi|289558752|gb|ADCD01000003.1| Micrococcus luteus SK58 ctg1119142780332, whole genome shotgun sequence Length of sequence - 34631 bp Number of predicted genes - 29, with homology - 29 Number of transcription units - 17, operones - 6 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 610 - 668 -0.9 1 1 Tu 1 . - CDS 812 - 2155 668 ## PROTEIN SUPPORTED gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 2 2 Tu 1 . - CDS 2225 - 4513 1717 ## COG3973 Superfamily I DNA and RNA helicases 3 3 Op 1 16/0.000 - CDS 4682 - 6142 1166 ## COG0165 Argininosuccinate lyase 4 3 Op 2 . - CDS 6228 - 7469 1071 ## COG0137 Argininosuccinate synthase - Prom 7532 - 7591 2.9 5 4 Tu 1 . + CDS 8092 - 8934 766 ## Mlut_14360 Rpf resuscitation promoting factor with transglycosylase-like domain + Term 8968 - 9016 21.6 - Term 8963 - 8997 9.7 6 5 Op 1 4/0.000 - CDS 9050 - 9538 395 ## COG1438 Arginine repressor 7 5 Op 2 9/0.000 - CDS 9538 - 10497 754 ## COG0078 Ornithine carbamoyltransferase 8 5 Op 3 13/0.000 - CDS 10494 - 11780 1090 ## COG4992 Ornithine/acetylornithine aminotransferase 9 5 Op 4 10/0.000 - CDS 11777 - 12763 810 ## COG0548 Acetylglutamate kinase 10 5 Op 5 11/0.000 - CDS 12775 - 13935 765 ## COG1364 N-acetylglutamate synthase (N-acetylornithine aminotransferase) 11 5 Op 6 . - CDS 13932 - 14972 774 ## COG0002 Acetylglutamate semialdehyde dehydrogenase 12 6 Tu 1 . + CDS 15075 - 16076 837 ## COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases 13 7 Op 1 . + CDS 16198 - 20205 3365 ## COG1020 Non-ribosomal peptide synthetase modules and related proteins 14 7 Op 2 . + CDS 20202 - 21542 1015 ## COG0308 Aminopeptidase N 15 8 Tu 1 . - CDS 21561 - 21935 245 ## Mlut_14460 phosphopantetheinyl transferase 16 9 Tu 1 . - CDS 22184 - 24763 2099 ## COG0072 Phenylalanyl-tRNA synthetase beta subunit 17 10 Op 1 . + CDS 23624 - 25930 1068 ## RMDY18_14230 hypothetical protein 18 10 Op 2 . + CDS 25936 - 26343 234 ## COG4357 Uncharacterized conserved protein 19 10 Op 3 . + CDS 26340 - 26789 283 ## Mlut_14500 hypothetical protein 20 11 Tu 1 . - CDS 26832 - 27494 506 ## COG2039 Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) 21 12 Tu 1 . + CDS 27587 - 28660 758 ## COG1533 DNA repair photolyase 22 13 Tu 1 . - CDS 28695 - 29207 320 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 23 14 Op 1 . + CDS 29264 - 30586 872 ## COG2814 Arabinose efflux permease 24 14 Op 2 . + CDS 30728 - 31000 303 ## Mlut_14550 hypothetical protein + Term 31042 - 31083 14.1 - Term 31030 - 31071 14.1 25 15 Op 1 4/0.000 - CDS 31113 - 32009 570 ## COG0566 rRNA methylases 26 15 Op 2 . - CDS 32146 - 32532 642 ## PROTEIN SUPPORTED gi|239917948|ref|YP_002957506.1| LSU ribosomal protein L20P 27 15 Op 3 . - CDS 32622 - 32816 323 ## PROTEIN SUPPORTED gi|239917949|ref|YP_002957507.1| LSU ribosomal protein L35P 28 16 Tu 1 . - CDS 32921 - 34060 537 ## COG0290 Translation initiation factor 3 (IF-3) - Prom 34223 - 34282 1.7 29 17 Tu 1 . + CDS 34241 - 34612 351 ## Mlut_14600 hypothetical protein Predicted protein(s) >gi|289558752|gb|ADCD01000003.1| GENE 1 812 - 2155 668 447 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 [Phaeobacter gallaeciensis BS107] # 31 440 16 412 418 261 37 3e-69 MAPQNEERAARLRAQANDPSFENVWQELRWRGLVHVSTDEAALEQALAGEPVSYYCGFDP TAPSLHLGHLVQLLTLRRLQLAGHRPYALVGGATGLIGDPRQTSERVLNSQETVAAWVES LRAQIEPYLSFEGENAATMVNNLDWTAGMSALDFLRDVGKNFRVGTMVKKEIVAKRLNSD EGISYTEFSYQVLQGNDFLELHRRHGVTLQTGGSDQWGNLTAGTELIRKVEGTHAHALGT PLITNADGTKFGKSEGNAVWLDAEMCSPYAFYQFWLNTADADVVDRLKVFTFLTRAEIEE YAQKVADEPFRREAQKRLAWEVTALAHGEETTTKVIEASQAVFGGGDLTTVDPDTLTAVL AELPQADRTQWEGEPGTVTAVELLVSTGLVASRSEARRTVRDGGASVNNVRVTDADQVFT RDDAFAGRHLLVRRGKKNMAGADLGEG >gi|289558752|gb|ADCD01000003.1| GENE 2 2225 - 4513 1717 762 aa, chain - ## HITS:1 COG:Cgl1339 KEGG:ns NR:ns ## COG: Cgl1339 COG3973 # Protein_GI_number: 19552589 # Func_class: R General function prediction only # Function: Superfamily I DNA and RNA helicases # Organism: Corynebacterium glutamicum # 1 746 17 754 755 335 35.0 2e-91 MTDTVSVRQSELDLERGRVAERYARLDALREEKERQLAAVRRTGPQGSLQNHSERDAFAS LYEDRLAQLYAVDDRLVFGRLDLDAEQEGGADEQRYIGRIGLTTEDHERLLVDWRAAEAG AFYQATAAHRGRVRRRRHLMLRGREVRDLEDDILDPTLLGEDGVRADGQGALLAAVTARR TGRMGDIVATIQSEQDEVIRAPLPGAVVVQGGPGTGKTAVALHRAAYLLYTHRERLARSG VLIVGPSTAFMRYIERVLPSLGETGVVMSSLGTLMPGVRAVPERDLDAAAVKGRLDMVDA VARAVAQRQRLLVEPRRLLIDGTTVKLKPAMVRRARDKARATRKPHNEARVTFVKILVRE LAEKLRKKLEKSSGTPVQRDLLLEDVRTSRDVRIALNLCWMPLTPERLIGDLLTREDLLR AAAPWLSDAEVGALLRPADAPWTEADVPLLDEAAELLGRLETPGRGGESTAQHERNLENA RASLENMHQTLADLGVDGVVDAEQLAAANEARGVRRTTAETAAHDRTWTYGHVVVDEAQE LSPMQWRLLARRCPMKSFTIVGDIAQSSRRDAAGSWASVLAPEFGDRWRLEELTVNYRSP ARVMRWAAQVARAAGLEVSHPRAVREGDHRPRLVTEPGGDVAALALEAVEVERNRVPEAL TAVIAPAGQTGELLTALRERWGEAAVDTAPLPGVAIVVATPWETKGLEFDTVVLVSPERI VDDARGVVGDLYVAMTRATQSLSVVAGTDAAALPAGLADVPE >gi|289558752|gb|ADCD01000003.1| GENE 3 4682 - 6142 1166 486 aa, chain - ## HITS:1 COG:Cgl1368 KEGG:ns NR:ns ## COG: Cgl1368 COG0165 # Protein_GI_number: 19552618 # Func_class: E Amino acid transport and metabolism # Function: Argininosuccinate lyase # Organism: Corynebacterium glutamicum # 8 476 3 471 477 555 64.0 1e-158 MTENTDARHGTNEGALWGGRFAGGPSEALAALSKSTHFDWRLAPYDIAGSRAHARVLHIA GLLSADDLDGMIAALDRLEADVRSGAYAPAASDEDVHGSLERGLIERAGPELGGRLRAGR SRNDQVATLGRMFLRDHARIIARGVIATVDALLDQARAHPYAPMPGRTHLQHAQPVLLSH HLLAHAWAFARDLQRLVDWDARAAVSPYGSGALAGSSLGLDPNAVAAELGFESAVWNSID GTAARDVYAEFAWVAAMVGVDLSRISEEVIFWATKEAGFVRLHDAYSTGSSIMPQKKNPD VAELARGKSGRLIGDLTGLLATLKGMPLAYNRDLQEDKEPVFDAADTLELLLPAVSGMIA TLEFQTGRMAELAPQGFALATDVAEWLVRQGVPFREAHELSGEAVKAAEARGVELWDLTD EEYAAISPALTPQVREVLSTEGSLGSRDAQGGTAPTAVAAQIGALEDALEPLRRWADTPG SVVDAR >gi|289558752|gb|ADCD01000003.1| GENE 4 6228 - 7469 1071 413 aa, chain - ## HITS:1 COG:MT1696 KEGG:ns NR:ns ## COG: MT1696 COG0137 # Protein_GI_number: 15841114 # Func_class: E Amino acid transport and metabolism # Function: Argininosuccinate synthase # Organism: Mycobacterium tuberculosis CDC1551 # 1 397 1 398 398 582 71.0 1e-166 MKERIILAYSGGLDTSVAIGWIGEATGAEVVAVAVDVGQGGESLETIRQRALDCGAVEAY VADARDEFAEQYCMPTLKANALYMDAYPLVSAISRPVISRHLVAAARQFGASTVAHGCTG KGNDQVRFEVSIQTLGPDLKCIAPVRDLALTREKAIEYAERNDLPIVTTKKNPFSIDQNV WGRAVETGFLEDIWNGPTKDVYDYTDDPAFPPAPDVVTIAFERGVPTALDGRALSPLEII EELNRRAGAQGVGRIDIVEDRLVGIKSREIYEAPGAMALIAAHRELENVTLEREQARFKK HVDQRWTELVYDGQWYSPLKRNLDTFIDATQEHVNGEIRLELHGGRATVQGRRSETGLYD FNLATYDEGDSFDQSSARGFIDIFGLSAKTASEREQRLRGSDDLQDVARLSND >gi|289558752|gb|ADCD01000003.1| GENE 5 8092 - 8934 766 280 aa, chain + ## HITS:1 COG:no KEGG:Mlut_14360 NR:ns ## KEGG: Mlut_14360 # Name: not_defined # Def: Rpf resuscitation promoting factor with transglycosylase-like domain # Organism: M.luteus # Pathway: not_defined # 1 150 1 150 223 216 99.0 6e-55 MDTMTLFTTSATRSRRATASIVAGMTLAGAAAVGFSAPAQAATVDTWDRLAECESNGTWD INTGNGFYGGVQFTLSSWQAVGGEGYPHQASKAEQIKRAEILQDLQGWGAWPLCSQKLGL TQADAEAGDVDATEAAPVAVERTATVQRQSAADEAAAEQAAAEQAAAEQAAADQAAAERW AAKQAAAEQAAADKAAAQRAAAAEKAAAQKAAAAEQAAAAEEAVVAEAETIVVKSGDSLW KLANEYEVEGGWTALYEANKGIVSDAAVIYVGQELVLPQA >gi|289558752|gb|ADCD01000003.1| GENE 6 9050 - 9538 395 162 aa, chain - ## HITS:1 COG:MT1695 KEGG:ns NR:ns ## COG: MT1695 COG1438 # Protein_GI_number: 15841113 # Func_class: K Transcription # Function: Arginine repressor # Organism: Mycobacterium tuberculosis CDC1551 # 7 155 18 164 201 105 48.0 5e-23 MAAPTTKIARQAAIREILATRGIRSQAELSDALGDRGLSVTQGTLSRDLVDLGAVRTRGP AGMVYALPAEGDDGAAPGRGSDAQLNRLASMARELLVSAEPTANLVVLRTPPGAAQFLAS VIDQARVEHVMGTIAGDDTILVITPGSTSAPAVAAHLLGLAG >gi|289558752|gb|ADCD01000003.1| GENE 7 9538 - 10497 754 319 aa, chain - ## HITS:1 COG:Cgl1365 KEGG:ns NR:ns ## COG: Cgl1365 COG0078 # Protein_GI_number: 19552615 # Func_class: E Amino acid transport and metabolism # Function: Ornithine carbamoyltransferase # Organism: Corynebacterium glutamicum # 1 319 1 319 319 343 57.0 3e-94 MTPTAAVRHFLVDTDLTPAEQAEVLDLAAQMKADRFRHRPLAGPRTGIVFFDKTSTRTRV SFAAGIAELGGTPLIVNPGESQLGHKESVADTARVLERMVGVIVWRTFAQAGLEEMAAHS SVPVVNALSDDYHPCQILADLLTVREHLGGTAGRTLAYLGDAANNMAHSYLLGCATAGMH VRVAGPEGHLPAEDVVAAARQRAAETGGSILVTTDAAEALADADVVVTDTWVSMGQEEEK EARLALFRDYQVDTAAMARAADEAIFLHCLPAYRGYEVTAEVIDGPRSVVFDEAENRLHA QKALIAWLLYRSGLAEEPR >gi|289558752|gb|ADCD01000003.1| GENE 8 10494 - 11780 1090 428 aa, chain - ## HITS:1 COG:ML1409 KEGG:ns NR:ns ## COG: ML1409 COG4992 # Protein_GI_number: 15827739 # Func_class: E Amino acid transport and metabolism # Function: Ornithine/acetylornithine aminotransferase # Organism: Mycobacterium leprae # 3 420 6 397 404 315 47.0 1e-85 MSTDQSALLERYHAALTGVFGRPTRVLVRGEGVHVWDADGRRYTDLLAGIAVNALGHGHP ALVRAVSEQIATLGHVSNLFTSEPQIRLAERLLELAGAPTGSTVFFANSGTEANEAAFKL ARRHGAEDPSGRRTRVIALERAFHGRTMGALALTHKEAYRAPFEPLPGGVEHVPGGDAAA LRAGLAPDDDGATVAAVILEPVQGEAGVHGWPAGYLAEVRAATREAGALMILDEVQSGVG RTGTWFGFQNPAVTGAAEPVVPDAFTLAKGLGGGVPIGALVCVGPAVSGLLTAGQHGTTF GGNPLATAAGLAVLHTVEDEGLLGHVRAAGEAVAALLEDLPEVAAVRGHGLWIGVDLADP AGPAPAGGLAPAVVAAGLEAGWILNATGPSTLRLAPPLTVPVAELERFAAALPGLVAAAL TPAEGDRP >gi|289558752|gb|ADCD01000003.1| GENE 9 11777 - 12763 810 328 aa, chain - ## HITS:1 COG:Cgl1363 KEGG:ns NR:ns ## COG: Cgl1363 COG0548 # Protein_GI_number: 19552613 # Func_class: E Amino acid transport and metabolism # Function: Acetylglutamate kinase # Organism: Corynebacterium glutamicum # 24 315 10 295 317 327 60.0 3e-89 MSPHTDPATAAAPVLSTADRLDRAESKAEVLVEALPWIRRFAGTVMVVKYGGNAMVSEEL RRAFAEDIVFLHHVGVHPVVVHGGGPQINAMLDRLGIASEFRGGLRVTTEEAMDVVRMVL TGQVGRELVGLVNSHGPYAVGFSGEDAGLLRARRTGAVVDGQEVDLGLVGEVTGVDPTAI LDVIEAGRIPVVSSVAPEIDDDGEPTGQVLNVNADTAAAALAAALGAAKLVLLTDVEGLY ADWPDRDSLISSLTAAQLRALLPSLASGMIPKMAACLAAVDAGVQRAHVVDGRRPHSMLL EVFTSAGVGTQVVPDAEPTAPTTPEEDA >gi|289558752|gb|ADCD01000003.1| GENE 10 12775 - 13935 765 386 aa, chain - ## HITS:1 COG:ML1407 KEGG:ns NR:ns ## COG: ML1407 COG1364 # Protein_GI_number: 15827737 # Func_class: E Amino acid transport and metabolism # Function: N-acetylglutamate synthase (N-acetylornithine aminotransferase) # Organism: Mycobacterium leprae # 3 386 19 407 407 316 55.0 4e-86 MSVTAAQGFRAAGVTAGLKASGTPDVAVVVNQGPRDAAAAVLTENRVAAAPVVWTRRAVR DGRATAVVLNSGGANAATGAEGLEDARRTAEHAAAALGTAADDVLVCSTGLIGERLPMDT LTAGVSEAVAALSADGGEDAAVAIKTTDTVAKTAVARGEGFTVGGMAKGAGMLAPGMATM LSVITTDADVPAPALDAALREAVRATFNRVDSDGCMSTNDTVILLASGASGTAPEPAAFA AALHEVCADLSRQLVADAEGARHDIAVRVVHAETEEAAEAVARAVGRSNLFKTAIFGQDP NWGRVIAAVGTVPESVAAFDPYALDVRFNGVQVCRASGVGEDRSRVDLSAREVLVEVDLH AGDAEATVWTNDLTHDYVHENSAYST >gi|289558752|gb|ADCD01000003.1| GENE 11 13932 - 14972 774 346 aa, chain - ## HITS:1 COG:Cgl1361 KEGG:ns NR:ns ## COG: Cgl1361 COG0002 # Protein_GI_number: 19552611 # Func_class: E Amino acid transport and metabolism # Function: Acetylglutamate semialdehyde dehydrogenase # Organism: Corynebacterium glutamicum # 1 346 11 357 357 353 57.0 2e-97 MTHTVAVSGASGYAGGEALRLLAGHPSVTVGAITAHSNAGERLGALQPHLHALADRVLAE TTAEVLAGHDVVILALPHGASGALAAEIAERSPDTLVIDAGADHRLESAADWEAFYGTAH AGTWPYGLPELPGQRERLAGTRRIAVPGCYPTTSILALAPGFAAGLLEPQDVVIVAASGT SGAGKALKPHLLGAEVLGGMSPYGVGGGHRHTPEIEQGLAQAAGEPVRVSFTPTLAPMSR GILATATARLRPGVAAADVRAAWAAAYGGERFVHLLPEGQWPTTKAVLGSNHVQLQLAVD ERAGRVIVCAVLDNLTKGTAGGAVQSMNIALGLPEQAGLEQQGVAP >gi|289558752|gb|ADCD01000003.1| GENE 12 15075 - 16076 837 333 aa, chain + ## HITS:1 COG:MT1501 KEGG:ns NR:ns ## COG: MT1501 COG0604 # Protein_GI_number: 15840914 # Func_class: C Energy production and conversion; R General function prediction only # Function: NADPH:quinone reductase and related Zn-dependent oxidoreductases # Organism: Mycobacterium tuberculosis CDC1551 # 14 330 9 333 335 287 54.0 2e-77 MTTANTPAVPRTHHAVVVSATGGPEVLQWTETEVPSPAPGHVLVRTAAAGLNFIETYQRS GVYTMDLPFTPGTEGSGEVVALGEGVDAALLGARVATATATGAYAEHFTAPADRLLTVPE GIDLAEAAALPLQGMTAHYLCRSTFPVEEGHTVVVTAGAGGVGLLLTQLATARGARVVTT ASTEEKRELSRGAGAVAAVDYPDLAATVAELTDGEGAHAVYDGVGKDTFDTSLEVLRVRG TLVLFGGASGQVPPFDLQRLNAAGALYVTRPSLVHYTRTGEETRWRGGEVFGAWASGELD VRIGERFPLADAAAAHAALESRSTTGKVVLTLS >gi|289558752|gb|ADCD01000003.1| GENE 13 16198 - 20205 3365 1335 aa, chain + ## HITS:1 COG:Cgl2655_1 KEGG:ns NR:ns ## COG: Cgl2655_1 COG1020 # Protein_GI_number: 19553905 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Non-ribosomal peptide synthetase modules and related proteins # Organism: Corynebacterium glutamicum # 24 647 8 630 636 610 55.0 1e-174 MSLSPAAPTPPPVPLDPTAAPHRAQLPGSERTPPARTLVEVFDATAREHPDATALDDGVE PLTYAELRERVDETARHLWTAGVRAGDRVGVRIASGTAALYVSILGVLAAGAAYVPVDAD DPEERARLVFGEAKVAGVLTDERVYAPHPEHTVDPAAEARTPGLEDDAWIIFTSGSTGTP KGVAVSHRSAAAFVDAEARIFLADDPLAPGDRVLAGLSVAFDASCEEMWLAWRHGACLVP APRSLVRSGMDLGPWLAERRITAVSTVPTLAAMWPTEAMDNVRLLIFGGEACPPELAARL AEDGREVWNTYGPTEATVVACAAPLTGLGPVRIGLPLDGWDLAVVDPQTTLPVAEGETGE LIIGGVGLARYLDPAKDAEKYAPMPSLGWERAYRSGDLVVFEPEGLLFVGRADDQVKLGG RRIELGEVDAALQALPGVHGGAAAVQTTPAGHQILVGYLVPADPEAELDLHMAREHLAAE LPAALVPRLAVVDSLPTKTSGKVDRHALPWPLPGAEVDEDAPQPDEDTADGWVLRQWADV LGAPPQDADTDFFEAGGGSLAAAQLVARLRLRHPAVTVQDVYRNPTAGALVAAVVGEDGP RGIEVHDRHVDRTRHRTQWVQTLVGLPVFVLPALRLGVWTGLTLNLLTLSGLAPGLPTVP WWVLIAAGLLVVTVPGRMLLTAAIARLLLRGVSPGSYPRGGRVHLRLWLAQQISDLVDPY SLAGATWVPAYARLLGNRIGKDVDMHTVPPVTGMLTVEEGAAIEPEVDLSGYWVDGDVVR LGEVRIGADAVVGARSTLLPGAQVGSGAHVEAGSTVAGRVRGGQRHAGSPAVKVGKVKSR GPAEAPRETRGWRLMATVLSTLISLLPLVSAAAAAAVAAWSLTWWPPAPEAGPLAAVGTT AARLLAASPLVAGVWFLTQMLLVLVTVRLLALGITEGHHPVRSRVGWQVWATERVLDAAR DQLFPIYASRFTPTWLRLLGAEVGRGVEASTVVLVPCMTRVGDGAFLADDTMVSSYSLDG GWMHVAPAKVGKRSFVGNSGMVPGGRTLRRDSLVAVLSTTPAKTKAGTSWMGSPPVRLRR NEVTADASLTYDPPARLKAARTAWELLRAIPVWLHVALSIAVGAALAALIAVGTWALAFI LGGVVLLAAGAVAAGLTVLAKRVFVGRIRAGEHPLWSSFIWRNEVADTFTEFLAAPWFSR AAAGTPALVWFLRAMGARIGHGAWVESYWLPEADLVELGDGATVNRGCVVQTHLFHDRVM SLDAVVLEDGATLGPHSVVLPAARLGRGTTVGAGSLVMRGEELPAGTWWLGNPVSPWRRP DGDPAAAATPSREEA >gi|289558752|gb|ADCD01000003.1| GENE 14 20202 - 21542 1015 446 aa, chain + ## HITS:1 COG:Cgl0338 KEGG:ns NR:ns ## COG: Cgl0338 COG0308 # Protein_GI_number: 19551588 # Func_class: E Amino acid transport and metabolism # Function: Aminopeptidase N # Organism: Corynebacterium glutamicum # 22 445 34 455 460 300 40.0 5e-81 MSTDPYVPGVGTDAATVEHIALDLDVRLAANRVSGTAVLRVRLTKQSRRIELDLHRLRVS RVDAVVDGRAIASSFTQPGRAPSRLVVDLGESRPEGTLVELTVVYAGTPTLRRSPWGTIG WEELTDGVLVAGQPHGASTWLPCVDSPTSRSTAEITLTCDAGYLPVANGVGAPVRTRGSR VTWRWQLDQPVPAYLLSVQIGRYRLVDAAPPAEGLPPLRLVVSPRTEQRARRALAPQPAM MATFIDAYGPYPFEDYTAVVADEELEIPLEAAGMSLFGTNHLDGSWESERLIAHEMSHQW FGNAVTLGRWSDLWLHEGFACWSEWLWAEASGRSSITSMARRAWQKLAAHPVDQALAEPG PEEMFEDWVYKRGALTVEALRQLLGTDLFGSMLRAWVREHRFGTVDSLGLRTHVHAWAPH AGVSRAQVDELFDAWTLRPALPPFPG >gi|289558752|gb|ADCD01000003.1| GENE 15 21561 - 21935 245 124 aa, chain - ## HITS:1 COG:no KEGG:Mlut_14460 NR:ns ## KEGG: Mlut_14460 # Name: not_defined # Def: phosphopantetheinyl transferase # Organism: M.luteus # Pathway: not_defined # 1 124 83 206 206 166 93.0 2e-40 MPGTEDRARIGAWWAPARPADGLGLGVDLERADAAAFADEDGLGGVGFSTAERARVRELP APERPAARARLWTRKEALVKAAGTGFTGDPAAVDTLTVPTDVVLVDLTDRLPGGLVGTLA RRGR >gi|289558752|gb|ADCD01000003.1| GENE 16 22184 - 24763 2099 859 aa, chain - ## HITS:1 COG:Cgl1357_2 KEGG:ns NR:ns ## COG: Cgl1357_2 COG0072 # Protein_GI_number: 19552607 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Phenylalanyl-tRNA synthetase beta subunit # Organism: Corynebacterium glutamicum # 174 859 1 672 673 456 43.0 1e-127 MRIPLDWLREFVPVPAEHRAEDVMADLVRVGLEEEDVHRPAAELQGPIVVGQVLSKEPEP QKNGKTINWCSVRVVPEGAAQPLTGEGIEPSGVQGIVCGAHNFEVGDKVVVALPGAVLPG DFRISPRKTYGHVSAGMIASSTELGMGDDGTDGIIVLGDLGLDPEPGTDARDVLDLHGEA AEINVTPDRGYAFSMRGVAREYAHATGVPFTDPAAAIHPPAADDAGPAVRIDDDAPIHGE PGATRFVARTVSGVDATRPTPPWLAARLRLAGIRTISLPVDISNYVMWELGQPLHFYDAE TLSGEIVVRRARAGETLTTLDGKERELDAEDLLITDDSGPIGLAGVMGGAATEVTDATTT IVVESANFDPVSIARTRRRHRLPSEASKRNERGVDWEIADEAAERAVQLLVELAGGTAEP GVTDVGTRPQPAVVEMAADFPSALVGVAYTTDEVVETLRALGAEVTVAEAADDAAPRLTV TAPSWRTDLRIPEDLAEEVARLRGYDEIPSVVPVAPPGRGFTRRQAQRRRVSAALAAAGL TEVLAYPFVSEEQNRRFGADSDAQGQALAMVALANPIASQYRHLRLSLLPGLVETARRNL SRGFRDLALYEMGLVFLPGAQLGSATIPPRAVHPSAEVLADLEAGIPAQPWHVAGLYAGH DSAPGPDHDPRPVDWQDAVAGALDVADVLGVGLAARQGRHHAFHPGRVAELVVVTEHGDR VVGVAGELHPQWLEAEDLPARTSVWELDLDALCAAAPEIVVAAPLSTFPVSTQDVALVVD EAVVAGDVRATLAEGAGELLEAVELFDVYRGAGVPEGRKSLAFSLRFRAPDRTLTAEEVS EARAAATALAAQRHGAVQR >gi|289558752|gb|ADCD01000003.1| GENE 17 23624 - 25930 1068 768 aa, chain + ## HITS:1 COG:no KEGG:RMDY18_14230 NR:ns ## KEGG: RMDY18_14230 # Name: not_defined # Def: hypothetical protein # Organism: R.mucilaginosa # Pathway: not_defined # 400 701 1 302 394 199 42.0 4e-49 MPAPRPRDRHRVEVRGLDHDRGGGVRDLGGGPAHDARQADGAGVVRDEQVLRVELALLAV EGGQGLSGPRAAHHDLAGERFRVVEVQGLAQLPHHVVGDVHRQGDGADAGQAQARGEPRW GRTGRVHAGDRAGHEAGGAGLAVDRRVVVDADGRAGVVGRGRVDRRGRVREGHAGGVRVL ARDAAHRERVAAVGRHVDLGGLAVQVQDVPGVGARLGVEPEVAEHDDPVRAVVAHAQLRA GGDHAGRDVPVGLAGADAEVAGQHRAGQGHDDLVPDLEVVGAAHDALHAGGLDPLAGERL GGALGHHAHGAPVDGLAVLLRLGLLGEHLPDDDRALQLGGRTVDVLLLEADADEVGHHVL GTVLRGHGDELPQPVQGDAHGSDLHSEVLGEADVALDHVVHVRDLVAEHERALHAHAERE PGVLLRVQARGAQHVRVHHAAAAPLDPAGPALGAGVPDVQLGAGLGEREEVRAQADGRLG PEHLAGEVLEGAAQVGHGQALVHGQALELVEHRGVRGVQLVRAERAARAQHVGGGAPLEQ GAHLHRGGVGAQQQVGLGRGHEEGVLHLAGRMVRREVEGVEVEPLGLELGALRDLPAHAD EDLRDAVHRQRERVTGADAAATDRSGHVHRLLAQDPRGLLRLEHLGAGGQGLAQAAACGA HELAGLRLALLGQSADRLVRESQGGPVAGVGQAGGLELIEVGRGLVRGECGLHGGLHRLR VHGGDLRHGRGGLRAGLGAGCHQGNDLRMGDGGTPVSLVSAPGPLGLG >gi|289558752|gb|ADCD01000003.1| GENE 18 25936 - 26343 234 135 aa, chain + ## HITS:1 COG:SA0692 KEGG:ns NR:ns ## COG: SA0692 COG4357 # Protein_GI_number: 15926414 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 12 119 2 104 104 90 35.0 1e-18 MTAPDSLDGTDPLLRGVGLDAQTRCAHHATARDVVALRFACCPAYWSCHRCHAELADHPA VPVPAGDFDRPHVLCGVCRTELSVTAYLALEATADPACPACGAPFNPGCAAHAPLYFDVS ASGSPAGDAAPAAQP >gi|289558752|gb|ADCD01000003.1| GENE 19 26340 - 26789 283 149 aa, chain + ## HITS:1 COG:no KEGG:Mlut_14500 NR:ns ## KEGG: Mlut_14500 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 149 1 149 149 246 97.0 1e-64 MTAAPSRPSPPVHVRARGLWNLLNLATPLGLVGAVVAGCALRPGPHGLIEARGWTHRFPG GAAFTVGDVVFTRPGLRMTPALWRHEAGHADQYALLLGLPFLPAYALAAAWSTWRTGDPA SRNVFERRAGLALGGYIERPVVRGLRRRR >gi|289558752|gb|ADCD01000003.1| GENE 20 26832 - 27494 506 220 aa, chain - ## HITS:1 COG:YPO2703 KEGG:ns NR:ns ## COG: YPO2703 COG2039 # Protein_GI_number: 16122907 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) # Organism: Yersinia pestis # 11 220 3 215 215 160 45.0 2e-39 MTSRAPAPAARVLLTGFEPFGGDAHNPSIAAARDAVGVLADRGVTAEAVELPCAFGAAGP ALTAALDRVRPEVAIAVGLAGGTAAVRVERVAVNLQDARIPDNAGEQPVDRPVRADGPAA LFATLPAKRAVAAIRAAGVAAEPSLSAGAFVCNHVMYSLLDAPGTARAAGFIHVPWDAEH RPTPDTPALPVADLARAVAEAALTALAGGPDLDVPGGTLH >gi|289558752|gb|ADCD01000003.1| GENE 21 27587 - 28660 758 357 aa, chain + ## HITS:1 COG:MT2655 KEGG:ns NR:ns ## COG: MT2655 COG1533 # Protein_GI_number: 15842117 # Func_class: L Replication, recombination and repair # Function: DNA repair photolyase # Organism: Mycobacterium tuberculosis CDC1551 # 1 324 1 318 340 320 54.0 3e-87 MRWEAQTLRSEGGAQRATAGTPAGSAALLPLSDLQRSVTTPEFAGVTFHEVLAKTALNSV PSASAMPFRWTVNPYRGCTHACRYCYARSTHTFLELDAGADFDRQIVVKVNVAEVLRAEL ARPTWGREAVALGTNTDPYQRAEGRYALMPGIIRVLADSGTPFSVLTKGTLLARDVPLLQ AASRQVPVQVSLSLAMLDPAIAAAVEPGTPSPTARLRLIERLAAAGADVTVMAMPLLPWL TDGDREIDALMRALADAGAARVMPGALHLRPGAKEWYLDWIRREHPDLLAGYEQMYARSA YAPESYRRMLTRVAGEAAARHGLARGGAHGIRREDGPPARRTPTSRPSAPAAQPALF >gi|289558752|gb|ADCD01000003.1| GENE 22 28695 - 29207 320 170 aa, chain - ## HITS:1 COG:SA2278 KEGG:ns NR:ns ## COG: SA2278 COG0494 # Protein_GI_number: 15928069 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Staphylococcus aureus N315 # 28 159 7 127 130 65 33.0 4e-11 MTSATPVRPAPAASPTTSPRDGARPRLVVGLALLDDAAAPTRLLAARRSAPAALRGLWEF PGGKVEPGEGAQDALLRECREELGVAVRLGPEVAAPEPDGWELANGARMRVFWGVLAEEG ATPRALQDHDLLAWLPLAGPGVQHLDWIPADRPIVAEVLRGAATAFSAGR >gi|289558752|gb|ADCD01000003.1| GENE 23 29264 - 30586 872 440 aa, chain + ## HITS:1 COG:Cgl0650 KEGG:ns NR:ns ## COG: Cgl0650 COG2814 # Protein_GI_number: 19551900 # Func_class: G Carbohydrate transport and metabolism # Function: Arabinose efflux permease # Organism: Corynebacterium glutamicum # 45 421 42 418 424 230 42.0 5e-60 MPIPTPAADGAHDRSPRPPRPTRPDPSIPPTVPTGPGALLGGRRVRLLPAILALALGSFA IGTTEFAMMGLLPQAVADLGVGLEAGGVLISMYALGVVIGAPLLAASFARVDRRVTSIVL MLLFVVGHVAAFLAPDMGSMMAARFVSGLPHGAYFSAAALAAADLAGPARRGQAVAWVMA GLSVANVLGVPGATALGQAVGWRWMFVIVAACAALCVGATAWLVPSVPAPAGASVGRELR GLASGRLWATVAVGVIGFAGMFALYTYIAPLLTEVAGLEERWVPAVLALYGVGMVIGTLV SGALTDRDPVGTLRLSFGLSAVSLAAVALTAPWAPVMIVFLFCVAVSGSGIAPSLQVLLV DSAPTAPQLAGSLNHSALNMANAMGAWVGAAAIGAGASLRTPPLVGAGIALAGLVLAFLL VRRDVAAPPGVRADDGGSPR >gi|289558752|gb|ADCD01000003.1| GENE 24 30728 - 31000 303 90 aa, chain + ## HITS:1 COG:no KEGG:Mlut_14550 NR:ns ## KEGG: Mlut_14550 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 90 1 90 90 93 79.0 2e-18 MGFIAWIVLGLIAGAIARLILPGRQGSGWLGALITGILGALLGGWIGRLMGFSTNDSFFD LATWIFAIIGGVIVAFIWQAITARRTGTRA >gi|289558752|gb|ADCD01000003.1| GENE 25 31113 - 32009 570 298 aa, chain - ## HITS:1 COG:Cgl1355 KEGG:ns NR:ns ## COG: Cgl1355 COG0566 # Protein_GI_number: 19552605 # Func_class: J Translation, ribosomal structure and biogenesis # Function: rRNA methylases # Organism: Corynebacterium glutamicum # 95 292 72 268 273 138 45.0 1e-32 MTPHAEPMTHPRAERVRAVAALAGRSARRRTGTFLVEGPQACREVLRAHLGEGPAAAAGQ WRAGQVLAQVYVSVGLVDRDPALAELVARVRDRPTPGGERVLVREASDEVLTAMADAVTG QDIVAVARMPQPQTVEAVLEEARLAAVLCRVQDPGNAGTVIRAADAAGADAVVLTPGSVD PFNPKVVRSTAGSLFHLPVVTAVPAEAAAAAARAAGLQVWAADGYGADRLDALAPGLVAA PTAWLFGNEAQGLDDGELALADRRVAVPLYGAAESLNVGTAATVCLYSSAMAGARRAG >gi|289558752|gb|ADCD01000003.1| GENE 26 32146 - 32532 642 128 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|239917948|ref|YP_002957506.1| LSU ribosomal protein L20P [Micrococcus luteus NCTC 2665] # 1 128 1 128 128 251 99 3e-66 MARVKRAVNAHKKRRTMLERASGYRGQRSRLYRKAKEQMLHSFTYNYQHRHKRKGDFRRL WITRINAAARANGMTYNRFMQGLKLAGVEVDRRMLAEIAVSDAATFAVLVKTAREALPAD VNAPAASR >gi|289558752|gb|ADCD01000003.1| GENE 27 32622 - 32816 323 64 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|239917949|ref|YP_002957507.1| LSU ribosomal protein L35P [Micrococcus luteus NCTC 2665] # 1 64 1 64 64 129 100 3e-29 MPKMKTHSGAKKRFRVTGSGKIMRQQANRRHYLEHKSSRLTRRLKGDQLVSKGSIKQIKR MLGI >gi|289558752|gb|ADCD01000003.1| GENE 28 32921 - 34060 537 379 aa, chain - ## HITS:1 COG:Cgl1345 KEGG:ns NR:ns ## COG: Cgl1345 COG0290 # Protein_GI_number: 19552595 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation initiation factor 3 (IF-3) # Organism: Corynebacterium glutamicum # 42 217 9 185 189 214 67.0 2e-55 MARSPHRGSRLRDRVEASVCVRAGEAFLVSEGPSGGRGITRRLAQRSSTISDPRINERIR VPEVRLVGPNGEQVGIVRVEDALRLAAEADLDLVEVAPTAKPPVCKLMDFGKYKYEAAVK ARESRKNQVNTVLKEVRFRLKIDKHDYETKTGHAKKFLSQGDKVKAIIQFRGREQQRPEL GIKLLQQFAEDVAELGTVESQPRQDGRNMVMVVAPLRTKADARADQRKNSTESHRERQGG GSRRDQAAREAKERAAQKAASDSAPVRNSIGDAFPEQLKAMAARTQENASAAPAETKQAP KTPAPAAKPATRATPASAPKPAATPKPRSSAAPAATPKPRSAATSAAPSSAPKPAAKPMP APPKPAAPRGGAPKPGPRA >gi|289558752|gb|ADCD01000003.1| GENE 29 34241 - 34612 351 123 aa, chain + ## HITS:1 COG:no KEGG:Mlut_14600 NR:ns ## KEGG: Mlut_14600 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 123 1 123 123 202 97.0 3e-51 MTDERQAQDATPMDAPAEIRDIHEVPAVEVITTTAVHVMTAAAVKCGLADSPDARELMDL DEARKLITALAGLVTAAAPEIGSQHAGPLRDGLRSLQLAFREVSPFPDAPGKGPGEKFTG PVN Prediction of potential genes in microbial genomes Time: Thu May 26 06:45:43 2011 Seq name: gi|289558713|gb|ADCD01000004.1| Micrococcus luteus SK58 ctg1119142780305, whole genome shotgun sequence Length of sequence - 38225 bp Number of predicted genes - 36, with homology - 34 Number of transcription units - 22, operones - 9 average op.length - 2.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 207 105 ## Mlut_04570 ATP-dependent helicase HrpB 2 2 Op 1 . + CDS 289 - 1431 869 ## gi|289704527|ref|ZP_06500961.1| hypothetical protein HMPREF0569_0759 3 2 Op 2 . + CDS 1494 - 3341 1382 ## COG2066 Glutaminase - Term 3333 - 3381 10.6 4 3 Op 1 . - CDS 3382 - 5637 1245 ## COG1090 Predicted nucleoside-diphosphate sugar epimerase - Term 5726 - 5776 20.1 5 3 Op 2 . - CDS 5791 - 8013 2209 ## COG2838 Monomeric isocitrate dehydrogenase 6 4 Op 1 . + CDS 6040 - 10191 1649 ## BURPS1710b_3404 hypothetical protein 7 4 Op 2 . + CDS 10251 - 11672 1349 ## COG0477 Permeases of the major facilitator superfamily 8 5 Tu 1 . - CDS 11659 - 12222 480 ## COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN 9 6 Tu 1 . + CDS 12356 - 12682 289 ## Mlut_04470 hypothetical protein 10 7 Tu 1 . - CDS 12693 - 13967 1002 ## Mlut_04460 hypothetical protein 11 8 Op 1 . + CDS 14257 - 15435 988 ## COG0438 Glycosyltransferase 12 8 Op 2 . + CDS 15523 - 16581 886 ## COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) 13 9 Tu 1 . + CDS 16721 - 18079 1249 ## COG0334 Glutamate dehydrogenase/leucine dehydrogenase 14 10 Tu 1 . + CDS 18273 - 18956 346 ## Mlut_04430 hypothetical protein + Term 19130 - 19169 -0.6 15 11 Op 1 . - CDS 18921 - 19400 276 ## gi|289704541|ref|ZP_06500975.1| hypothetical protein HMPREF0569_0773 16 11 Op 2 . - CDS 19472 - 19918 375 ## Mlut_04420 predicted thioesterase 17 11 Op 3 . - CDS 19915 - 21135 947 ## COG4850 Uncharacterized conserved protein 18 11 Op 4 . - CDS 21163 - 22899 784 ## Mlut_04400 hypothetical protein 19 12 Tu 1 . + CDS 22664 - 23188 458 ## Mlut_04380 predicted flavin-nucleotide-binding protein 20 13 Tu 1 . - CDS 23212 - 24264 795 ## COG3485 Protocatechuate 3,4-dioxygenase beta subunit 21 14 Tu 1 . + CDS 24263 - 24652 89 ## gi|289704549|ref|ZP_06500983.1| conserved domain protein 22 15 Op 1 . - CDS 24741 - 26459 1343 ## COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] 23 15 Op 2 . - CDS 26456 - 27472 943 ## COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family 24 15 Op 3 . - CDS 27553 - 28122 510 ## COG1396 Predicted transcriptional regulators 25 16 Tu 1 . + CDS 28351 - 29817 1382 ## COG0591 Na+/proline symporter 26 17 Tu 1 . + CDS 30016 - 31209 1141 ## COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases 27 18 Op 1 . - CDS 31285 - 31608 186 ## Mlut_04310 hypothetical protein 28 18 Op 2 . - CDS 31613 - 32512 398 ## COG2149 Predicted membrane protein 29 19 Tu 1 . + CDS 32126 - 33256 987 ## COG1814 Uncharacterized membrane protein 30 20 Op 1 . - CDS 33158 - 33427 121 ## 31 20 Op 2 . - CDS 33435 - 34142 382 ## Ndas_1076 ABC transporter membrane protein 32 20 Op 3 . - CDS 34189 - 35118 306 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 33 20 Op 4 . - CDS 35212 - 35706 187 ## 34 21 Op 1 19/0.000 + CDS 35621 - 36730 593 ## COG4585 Signal transduction histidine kinase 35 21 Op 2 . + CDS 36700 - 37335 419 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 36 22 Tu 1 . - CDS 37454 - 38224 570 ## COG0074 Succinyl-CoA synthetase, alpha subunit Predicted protein(s) >gi|289558713|gb|ADCD01000004.1| GENE 1 3 - 207 105 68 aa, chain - ## HITS:1 COG:no KEGG:Mlut_04570 NR:ns ## KEGG: Mlut_04570 # Name: not_defined # Def: ATP-dependent helicase HrpB # Organism: M.luteus # Pathway: not_defined # 4 68 1 65 893 80 84.0 1e-14 MDPMPTPADPVAVPTALAAALDRLGAGLTFTAALPDLEAALDARGAAVVEAPPGTGKTTV VPPALAVR >gi|289558713|gb|ADCD01000004.1| GENE 2 289 - 1431 869 380 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289704527|ref|ZP_06500961.1| ## NR: gi|289704527|ref|ZP_06500961.1| hypothetical protein HMPREF0569_0759 [Micrococcus luteus SK58] # 1 380 1 380 380 719 100.0 0 MGRRIAFTDVDVSNDGVVTCAVHRDGEAQELWFRLPYAFTPAPDLIAAVYAGLCGEVFDE VQIDLPIGPRLSAAIEEMTGARVEHAPGTDRSREPGTAQALNFSGGFDSLAARLIMPEAH LVSLDFGGRFARERPVYSRFPTHIVETNLVDLGLNLHGTEAFMSSAGILLRDELDLAVLG SGDIQASSLPAAFTGPVPQRTTPVAEVLGLGPASPVAGVSEAGTMLVCARRRPELLLDVL ASVAHRGEVKYHRKRLLLEAVAQRAGLDLALPDLPVLGQPRRWGAVFADDLAALYVLRVL GPEAASLLYNEEGIPGPVLERIPATSLAFMERFNPQAYAGLPPELLGEWYARLLRLGVPP YERQDWFDAATAMKAVRNQL >gi|289558713|gb|ADCD01000004.1| GENE 3 1494 - 3341 1382 615 aa, chain + ## HITS:1 COG:all2934 KEGG:ns NR:ns ## COG: all2934 COG2066 # Protein_GI_number: 17230426 # Func_class: E Amino acid transport and metabolism # Function: Glutaminase # Organism: Nostoc sp. PCC 7120 # 23 290 48 315 334 141 31.0 5e-33 MTTPVQEHLDRLTSAHAGEGEVPDGLGVAMLMVDGHRYVSGSMTSVPLATLASPLFHAQA LEDLGAVRVGERVGAAPVRDLDHRVEVDAVTGLPHNPLQNAGAVATASLVKGRGGRDRTA RMMQLLSALFDREVTVTESAARAENRAQHHTRSAAWLMKSLDTLDADPETLLEDIATVRA AAVTVEDLALLAGTLAHGGVHPVTGDRVLSEETVRGVLSAMDSCGMDTRDSRWAYDVGQP GWASTRGGTVLVVVPGHLGLALQSDTTDENGLGAAAMAALRTIVEDFELHPSVVTGSPRA ALRTHYRIDQAPSGTVRSAAVLEALGRFADTVHVMELGGHLGFSQVDAIARVSRGLPEAL ETLVVDMRSVSSISRPARLLVAQWFARALGNGLDVVVVDRDATEMKELMAAVEESVEVDL PEPLQDEAEGVDPAAEGAQFVFFDSRSRAAQWAEQRLLSRHAPQLLPRDAQEAAVAPLLQ HLSADDARLLESMMDERVYSDGQIIRRAGQPFGGIYVIVSGTVELSGQGTGNRRVRRTLL TPGMTFGEMALGQPGRQPSTVRARGPVTARVLTAQVMVALQEGFPQLALALWEALARDAF TALSQLIRETGALQD >gi|289558713|gb|ADCD01000004.1| GENE 4 3382 - 5637 1245 751 aa, chain - ## HITS:1 COG:Cgl1576_2 KEGG:ns NR:ns ## COG: Cgl1576_2 COG1090 # Protein_GI_number: 19552826 # Func_class: R General function prediction only # Function: Predicted nucleoside-diphosphate sugar epimerase # Organism: Corynebacterium glutamicum # 436 750 1 292 359 221 41.0 4e-57 MRRLVGQQGLLRGGAVEVVARGAVGAHHAVAGHDDGHQVGGARPAGGAHGPRGPAPLGQA AVGGGGAGGDAAQLPPRPLPERGARLGDVEGVQRGHVPRGVGGQGVGDGLGRTRTRFHGA RVHLAVGGLRVQGHEPVHERLEEAPDRGGGGLRVLRHGHAGGAHRLVLGGEDGHEGQLGG GQGGGGPAQLGKQVHPLIVLHGPARTGVRVSSICARLACMTEIRVFEHRTLLRHPREVVF QWLENPGALERLTPPFAGEVVQGPSDGLRVGSESRLRIQAPGAAGLFAGAAHGMLTGLLP DAVASRLPGGAAPAVPWRARHTAYEEGRMFRDEMVSGPLASWRHTHLLDDAAPGEADTAD GRRGTVVTDHIEYALPGESLVSRVPGLGTAASRRTHEAFEAELGRQFAYRARVMADDLDF HAAHPGPLSGGPARTVAVTGSGGLIGRQLCALLTTGGHRVVRLIRSSKKGGALDAALWDP ARETVDEDALAEADVVVNLAGEPIAGRFTDAHKEAVHDSRVRGTRTLVDALARIAAQEGD DARARALVNGSAIGYYGADAGTGPFGSGLVEDLEPGDDFLAEVVADWEAEARRAETSGTR VAMLRTGVVLSPAGGMLQQVLPLFLAGLGGPVATSGGESHDGSPWLSWIGVDDIAGAFAH AVLDDGVTGPLNAVAPEPVTAREFATVLGRVLRRPAVVPVPDAGPRLLLGEEGRAETVAA DQKVMADRLVASGYAMRDPELEGALRHVLGR >gi|289558713|gb|ADCD01000004.1| GENE 5 5791 - 8013 2209 740 aa, chain - ## HITS:1 COG:Cgl0644 KEGG:ns NR:ns ## COG: Cgl0644 COG2838 # Protein_GI_number: 19551894 # Func_class: C Energy production and conversion # Function: Monomeric isocitrate dehydrogenase # Organism: Corynebacterium glutamicum # 1 738 1 736 738 1020 71.0 0 MSKIIYTLTDEAPMLATASLLPIVRAYAGTAGVELETRDISLAGRILAAFKDVLPEDQRT ADALAELGELVKTPEANVIKLPNISASVPQLRAAIKELQAHGYALPEYPDEPKTDEEKDA KARYDSVKGSAVNPVLREGNSDRRAPKAVKAYAQRFPHSMGEWTPDSKTAVATMGADDFR ANEQSVTLPAADVLTIEFTGEDGKTTVLKEGLKVLKGEVVDGTFMSAKALDAFLAEQVKR AKEEGILFSAHLKATMMKVSDPVIFGHVVKAYFSELFEKYGEQLAAAGLSANNGLAAIEG GLDKLDAETAEGVRAAIAAAYENGPDVAMVNSAKGITNLHVPSDVIVDASMPAMIRTSGR MWNKDDQTQDTLAVIPDSSYAGIYQAVIDDCKANGAYDPTTMGTVPNVGLMAQKAEEYGS HDKTFIMDAAGTVAVKNSAGETLLSHDVEAGDIWRACQTKDVPVRDWVKLAVTRARASQT PAVFWLDETRAHDRELIKKVEEYLKEHDTEGLDIRILSPVEAAKLSVERIRRGEDTISVT GNVLRDYNTDLFPILELGTSAKMLSIVPLLNGGGLFETGAGGSAPKHVQQLVEENHLRWD SLGEFLALAVSFEHEAVANENHRAQVLADTLDAATGTLLIEGKSPKRKVGELDNRGSHFY LALYWARELAKQTEDAELAAAAKPIAEELEAQEETILAELNGVQGSPVDLGGYYAPEPEK VTSVMRPSATLNAIVDKLSV >gi|289558713|gb|ADCD01000004.1| GENE 6 6040 - 10191 1649 1383 aa, chain + ## HITS:1 COG:no KEGG:BURPS1710b_3404 NR:ns ## KEGG: BURPS1710b_3404 # Name: not_defined # Def: hypothetical protein # Organism: B.pseudomallei_1710b # Pathway: not_defined # 767 1345 304 849 917 143 35.0 4e-32 MAAAVVQLADLALRGLALDQQGAGGGVQGVRQDLRAVVLVRDRLVLEGHGQREELTEGVP AQVVLLHQLLHVLRGGAARTGLEQAAAVEQRDDREHLRGGAQLEDREQVRVVVTQHVAGH GDGVLAAADALHRELGSLHRGEDADVQALGVVLLEVLLDLLDELAVVGAGLIEPEHGRGL GRAGAGHGQLHPVAHRDVLGLAGAPDVAGLDVVGEQGLPGGVLHGHGARGVHDERLVVRA VLLGLLRHETHVRDGAHGGGVVGAVGLAVVDHGLVDAGVGGVRDDGQGVLGLVVLVPHAT GGADHGGHGGVHDHVGGHVEVGDALGGVHHGHVRAVLVGGGDGGAHTLGGLGVELVQAAL DRGEAVVRGQAGGGQLLAVLLEQLGEVGLHDVAEDHRVGDLHHGGLQVRGEEDALLLGAL DLLGEERVQGLGGHERAVHDLALEDLQALLEHGGLPVLAGELDRQHVGGRQGHGLLVGAE VVRAHGGDGGLGVRGPLAHRVGEALGVRLHGLRGAAVRVALAQHRVHGGALDGVVARLRV LLLVGLRLVRVLRQRVAVRLQLLDRGAQLRHGGGDVRQLDDVGLGGLHELAELGEGVRGA LVLGQDVLERGEDAAGQRDVTGLQLHAGGARVGAHDRQQRRGGQHGRLVRERVDDLRHAD DLSFWPHSRRGPRRQGTGDSPPIYPALRTRHTVCGSASAPRPSPVPSPGPAGSPGYQGAS GRWGRPPTTAARPVRRARDPQLGDEVLDLTVLELAHQVGLLARAPSPRRRGPPSTCPGAG TARGPCAARSGPPSGGGAPRSAVEEVARPGQVQGHAGGLGRGHDLLVPDGAARLDDGLHA GVDEDLQPVREREERVRGGHGPAGPLGGALPGDVLRAAGAAHVLPAGLRGAQGVGALDGQ AAGVEAVDLAHAHADRGAVVGQQHGVGLGRADGAPREGQVGQDGVVGGGAGGEGPGGRVV AVRVHRVRDLQQHATGDLLGLHRVPQEALGQAQQAQVLLGGEDLQGLGLERRGHDDLREH VLHLGGHGGGDGAVGRDHAAERGDRVARVGLGVRLRDVRALVRDGQAARVGVLDDRHGRD RVVEGGAHRGVGVHVVVVAHRLAVQQLGLRDAGGRRGVQVQRRGLVRVLAVAQDLRALEG EAGVGREHGDLVGVRVLAEVGGGPGGHGVVVRRGVGEGQGGQAPAGAQVEAAGLGGLDDL AVARRVHDDRHGRVVLRGRAHHGRPADVDLLDDGVLRGARVHGVHERVEVHDDEVERLHL EIAQLGHVVLATTVRQDARVHARMQRLHAAVQALLEPGDLGDLGDGHAGGGDALGGGAGR DDLHARGVEPGGELLEAGLVIDGDQGPLQGHRVQDGGGGVGRGHEGALLRGGPGASPSIG RAA >gi|289558713|gb|ADCD01000004.1| GENE 7 10251 - 11672 1349 473 aa, chain + ## HITS:1 COG:PA3467 KEGG:ns NR:ns ## COG: PA3467 COG0477 # Protein_GI_number: 15598663 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Pseudomonas aeruginosa # 49 469 24 451 455 179 32.0 8e-45 MSSATPPRPSADGAHPGPTPDVVAPDAALPTGEAVVQELPWRWSVQGRIFLIGGLGFMFD AWDVTLNGVMIPLLREEWALDKADAAWIGTANLIGMAVGAFLWGTIADRIGRKAAFAWTL AIFSVFTIAGALTDSLLWFALFRFVAGMGLGGTIPVDYALVGEFTPRRLRGRVLAAMDGW WPVGAALCGLVSAWLVGTWGDWRLPLLAMVLPALLVFVVRLGIPESPLFLMSRGRETQAR AVIDRMVAATGAPRRPYTMPPAEPARSGGVGAQLAAVWRFSPRITAVAWALFVAIMLVYY IALQWLPTFLIDAGYAEGRAFIMTSGMAAAGLLGVVVATVLIEVTGRRWLLAVSAVVASA LTVWLASVLDVPAAVLPLVLAFGFVVQVAIPVLYTYVSELYPTTLRASGFGWASAASRVG AGLGPLLFVGTLVPVLGLPGAFAVTGGLVVLACAAMLALAPETRGRALEVSAD >gi|289558713|gb|ADCD01000004.1| GENE 8 11659 - 12222 480 187 aa, chain - ## HITS:1 COG:ML0160 KEGG:ns NR:ns ## COG: ML0160 COG0299 # Protein_GI_number: 15826982 # Func_class: F Nucleotide transport and metabolism # Function: Folate-dependent phosphoribosylglycinamide formyltransferase PurN # Organism: Mycobacterium leprae # 2 185 14 195 215 176 56.0 2e-44 MRIVALVSGSGTNLQAVLDAVASGALDVEIAAVGADVAEAGGLERARAHGIATFVVSPKD HADRRAWDEALADAVAAYAPDWVVCSGFMRILGAPLLERFDGRILNTHPALLPSFPGAHG VRDALAHGVKVTGCTVHVVDAGVDTGPILAQAAVPVLDTDTEAELHERIKVQERALLLRV LGELSRR >gi|289558713|gb|ADCD01000004.1| GENE 9 12356 - 12682 289 108 aa, chain + ## HITS:1 COG:no KEGG:Mlut_04470 NR:ns ## KEGG: Mlut_04470 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 108 38 145 145 152 100.0 5e-36 MVLSFSLVLPWKLIALALGLVALVLGVRVWVTSRGAERSGLPRAVASAGMAMALVGMTTA ALPLLAWDATVQLEQCGASALTVRAQQACADEFTRQVEERTGVPQLRP >gi|289558713|gb|ADCD01000004.1| GENE 10 12693 - 13967 1002 424 aa, chain - ## HITS:1 COG:no KEGG:Mlut_04460 NR:ns ## KEGG: Mlut_04460 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 424 9 432 432 574 96.0 1e-162 MISLLAVTVPTLAVWATGGFERPTIEGAVQVGGVLWLALHAVPVTVATAMPTAPDHLIAG TAWFVPWGLTLVPLALSWRAGRRLARASYRDQAWQAFVGAVGAYALVGLAVAFLPGTDEL TAHPAPAALLPALLFGVAALAGARREAGTWAHLIGLDLTERISRRSQYERWAGSYAWSVV RAAAVAVLALTGLNALLVAGRLAAEWAAVVTVAEAIGGGPLGGLLLALLQIGWLPTFTAW SIAWTAGPGFSVGADSLYSVFGATPATAPALPALGALPGTWSPWQLLLLAVPIGAGAVAG VWLLREGENHLDDWLHTRHGSRAVSLTLSTLALAVLTGLLTGLLLLVPLALTSGTLGLGT LTEIGSHVWAVCAAVAGWVALGCAAGYLTALAVAGHRDGTTTVPRSGDRASGPRDRPSPR RARD >gi|289558713|gb|ADCD01000004.1| GENE 11 14257 - 15435 988 392 aa, chain + ## HITS:1 COG:MT0583 KEGG:ns NR:ns ## COG: MT0583 COG0438 # Protein_GI_number: 15839955 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Mycobacterium tuberculosis CDC1551 # 1 376 47 408 408 273 45.0 4e-73 MNGVTHSILQVLRHLRERGDEAMVIAPAASWSAGWTQRAGAGEAPREVEGFPVRTLPSVP LTGYASVRVAAGTVGRLRGMLADFAPDVVHIASPFVLGWRAVQAAEELGIPSVAVYQTEV PGYAARYGAPWLEDVLWSHVARLHNMATLTLAPSSFTVRQLHRQGVRRVHLWGRGVDSRR FHPAKRDEALRAELAPNGEKLVGFVGRLAHEKQVGDLRVLSDLPGTRLVVIGSGPLREQL ERELPGAHFAGFQGGEDLARHVASLDLFVHPGESDTFGQTLQEAMASGVPVVAVGRGGPL DIVDASRTGWLYPPGELDELRRHVADLVYDDVKRAAFADAAWASVQGRTWPVLCEQLVGY YEKAIAVQERRRVELARRLLTAPALLAARVFG >gi|289558713|gb|ADCD01000004.1| GENE 12 15523 - 16581 886 352 aa, chain + ## HITS:1 COG:AGc447 KEGG:ns NR:ns ## COG: AGc447 COG0667 # Protein_GI_number: 15887610 # Func_class: C Energy production and conversion # Function: Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 17 343 34 368 369 251 46.0 2e-66 MDATPHPRPAEPGPLPDPAAPRRLAGKDVRPVGLGCMNIVHGYSGFLDDAAAVGLLTRVL DDGTDHLDTATLYGGGRSEELVGRALARAGSDVRERVLLASKGGLVRDGQRRIDGRPETL RAHVDASLRRLGQDRIDLYYLHRLDPEVPVEESVGALAEAATDGKIGAIGLSEVSAATLT RAVAVHPIAAVQSEYSLATRNPEWGVLEACRRHGTAFVAFSPVSRGLLTDAPPRLGGLEA GDLRHRLPRFAEGHYEANLTLREALSAEAVRLGTSTAGLAVAWVLAQGEDVLAIPGTTSW EHWLEDRGAHEVRLTPADVARLDALVNDATVAGPRYSESQQASIDTEAAPPR >gi|289558713|gb|ADCD01000004.1| GENE 13 16721 - 18079 1249 452 aa, chain + ## HITS:1 COG:SMa0228 KEGG:ns NR:ns ## COG: SMa0228 COG0334 # Protein_GI_number: 16262575 # Func_class: E Amino acid transport and metabolism # Function: Glutamate dehydrogenase/leucine dehydrogenase # Organism: Sinorhizobium meliloti # 7 452 3 448 448 612 68.0 1e-175 MSEEDTMNESLESLRDEVFARNPGEAEFHQAVSEVFEALGPVVQRHPQYVEAGVMHRLCE PERQIIFRVPWIDDAGVVQVNRGFRVEFNSALGPYKGGLRFHPSVYLGIVKFLGFEQIFK NSLTGMPIGGGKGGSDFDPAGKSDREIMRFCQSFMTELHRHIGEHTDVPAGDIGVGAREI GYMFGQYKRLTNRFEAGALTGKGLTWGGSLVRTEATGYGAVMFVDSMLRTRGESMDGQQV LISGSGNVAIYAAEKAAALGATVLTASDSSGCIVDPDGLDLDLLKQIKEVERGRISEYAE RRGGRSRYVSGGSVWDVEGTVALPCATQNELDESAAQTLLKNGVKAVAEGANMPCTEAAA HLFVDSGTLFGPGKAANAGGVATSALEMQQNASRDSWNFDYTHDRLEQIMRDIHDRCVET AEEYGTPGNYVAGANIAGFIKVADAMIAQGVV >gi|289558713|gb|ADCD01000004.1| GENE 14 18273 - 18956 346 227 aa, chain + ## HITS:1 COG:no KEGG:Mlut_04430 NR:ns ## KEGG: Mlut_04430 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 227 1 227 352 321 94.0 1e-86 MTPLSDYSRALLPGRGPLLSTADPHDGAARRRLERAWTRGVLVRLSPRVYISVSDWAALR PWDRAVVSAVALSIARPATVFTGLTAARLHGLGPAVEPPALELRAPSPGHHGCGPLTRRP LAPSLVAHDRRLPVPPRRRPRWGLPEAAHAAPQPVEAVLSDGQSLGTVLADPLPTVLLVL GAATPFRDAVAPLDALVRAWPEEAARWARQAESRLGSAAALRRFERA >gi|289558713|gb|ADCD01000004.1| GENE 15 18921 - 19400 276 159 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|289704541|ref|ZP_06500975.1| ## NR: gi|289704541|ref|ZP_06500975.1| hypothetical protein HMPREF0569_0773 [Micrococcus luteus SK58] # 117 159 1 43 43 67 100.0 3e-10 MSQSGGRPLGLAESGPGPWDGRGSDRAGDARGGEDPRQPVRPQEVSPRPMRARPGDQLQG HLPFLLPADAGAAGRVVTVEERQVVLAQPVEFPVHPHLLPPEVRAGHPASVRIPVAMLQR RGRDEAELVDDGPAVGLAGGFRPRVREVLGPLESAEGGR >gi|289558713|gb|ADCD01000004.1| GENE 16 19472 - 19918 375 148 aa, chain - ## HITS:1 COG:no KEGG:Mlut_04420 NR:ns ## KEGG: Mlut_04420 # Name: not_defined # Def: predicted thioesterase # Organism: M.luteus # Pathway: not_defined # 1 148 1 148 148 266 100.0 2e-70 MTASRSVEVRIPLRWADMDAYGHVNNIAVVQLLEEARVAAFGVPANTGAGGGQAPPIDLL EGVAPGVRTFISEHTVKYRAQMPYRPVPLRVVVSVDAVKAASVHVGYALHDGVDDTLCAT ATSVMVFVDGQTGRPVRISPEQRAALAG >gi|289558713|gb|ADCD01000004.1| GENE 17 19915 - 21135 947 406 aa, chain - ## HITS:1 COG:Cgl2204 KEGG:ns NR:ns ## COG: Cgl2204 COG4850 # Protein_GI_number: 19553454 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Corynebacterium glutamicum # 45 358 22 339 344 249 42.0 6e-66 MPAASDAPTPAPRRGRLAPPGDPTPVENVATHLQEGWNRWHRARALRAGNVPTVMAFTGY GSTSWVRILSRVVIASDEEFMNGRRLSKVVADGVRGWRNFVAPPMAYAEVEVQVGDLRTT VRTDRMGVVDVVLDVELEPGWQTATLHVGGQEEHAVMDLYICEPGARIGLVSDIDDTVVV TSLPRPLLAAWNSFVIDEHARTPTPGIAVLLRRIAELEPKAPVLYLSTGAWNVAQTLTRF LGRNLYPLGALLLTSWGPTKDRWFRSGQEHKRVQLERLAEQFPDIQWILVGDDGQHDPEI YAEFAQRHPDRVKAIVIRQLTPSQALLAGGRAEDTRRSTPGIPWCYGPDGATLSNQLEDL GILPVEFVDVQPEAWREDILGDDEAPATLDAAAQRDGRSADEEAAR >gi|289558713|gb|ADCD01000004.1| GENE 18 21163 - 22899 784 578 aa, chain - ## HITS:1 COG:no KEGG:Mlut_04400 NR:ns ## KEGG: Mlut_04400 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 431 578 1 148 148 248 95.0 5e-64 MAPSWARTFTGTMSGRPSTASPRRAWRTRRSSRQTWSSSSTRTASSSGCSNIRWSPGSAT GSGRCIDGASAVSWCCGVIGASWRAGTGAVGSGAEIGLTPTLGVVGRPRGEDVAQHRRRR RCLAARGDGERERARVGARAVVDEPARRRRPRLRREPPAPGAAQDQLPRRDVPGLGVHVQ RGVGPARRRVGELEGAGDGAAHGRVGGHEPPEPVQRLVALARDRLARRVGGHEVLGALAA GRRRPGDLGQRALRPVAAGEVGAVLVGGERQPAHGVQHDAGHHLAVDLRGQGHREHREAV REVGGAVDGVDDPGQPGGLTCAGLRPELLAEHAGAGDRRRERGDEPGLGAPVVDGDEVVV RGLGLGPGGGGGAEGGGEVAGDRAGGVEGDRAQLGGAGQGGAHAPSLGGGPDTPDRTRDN GADPPSRGAAMTEHPLPTPGDDATLTGPQTPTPQRVAAVRALRKLLAAGYGTEARPIASH GAPASGTLGGVYPDYDDRVFPGLVAAQELAGIDVDYLRNVDRVSQAGIAEASLADLGTLF TYLVRGERFADGHVAAAIENGKVGRMLDRLTALVPEIR >gi|289558713|gb|ADCD01000004.1| GENE 19 22664 - 23188 458 174 aa, chain + ## HITS:1 COG:no KEGG:Mlut_04380 NR:ns ## KEGG: Mlut_04380 # Name: not_defined # Def: predicted flavin-nucleotide-binding protein # Organism: M.luteus # Pathway: not_defined # 1 174 1 174 174 321 98.0 7e-87 MTPQHHDTADAPSMQRPDPVAEPGDHLMFEHPDDEAVLVLDEDQVWRLLRRVRHARLGLA VDGRPDIVPVNVRAHDGAIYFRTAPGSKLAELTVNPRVVVQADGILADQAWSVLVHGTAR RLDTEAEIAEAESLGIEPWVPTLKDFYVRVDVQRVSGRHFVFGPHPERNASQTD >gi|289558713|gb|ADCD01000004.1| GENE 20 23212 - 24264 795 350 aa, chain - ## HITS:1 COG:Cgl0238 KEGG:ns NR:ns ## COG: Cgl0238 COG3485 # Protein_GI_number: 19551488 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Protocatechuate 3,4-dioxygenase beta subunit # Organism: Corynebacterium glutamicum # 29 326 8 296 330 297 55.0 2e-80 MAPWLPTRSRRPFPQVTEGGEAPAVTPTFEGRAFHRPAEDVEDQGAAFDVGTLVSRRNAL GIFGAGAGALVLAACGVQEGASSSSSSTSASAGSSSPAASSSSAASASPSATLTEMVTET AGPYPGDGSNGPDVLDASGIERSDLTTSIDTGTVAEGVPLTVTMNVIDMTHGDAAMTGAA VYLWHADAQGRYSMYSDGITEETYLRGVQVVGDDGTVTFTTVWPGCYAGRWPHLHFEVFP DKASITDATNNVLTSQIAMPEEQSSQVYATSAYDGSTANFAQVSLETDNVFSDGYETQLP QITGSVEKGFAITIDVPIDTTTEQEQGGMGGPGGGQPPAGGEGGQPPARP >gi|289558713|gb|ADCD01000004.1| GENE 21 24263 - 24652 89 129 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289704549|ref|ZP_06500983.1| ## NR: gi|289704549|ref|ZP_06500983.1| conserved domain protein [Micrococcus luteus SK58] # 60 129 1 70 70 125 100.0 6e-28 MEFLSWGARRVAGRVERPAWQRVQDVSVRSAGWLQDVLWEVPDTGGKPATAPAVSTWRAM SLVTGAVRACPRPGSLDARVRLLRRGDSSVAVVHLVTALRTHRPQLEFPQVHANPTPGGP AAPRSCHEC >gi|289558713|gb|ADCD01000004.1| GENE 22 24741 - 26459 1343 572 aa, chain - ## HITS:1 COG:MTH1444 KEGG:ns NR:ns ## COG: MTH1444 COG0028 # Protein_GI_number: 15679441 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] # Organism: Methanothermobacter thermautotrophicus # 16 552 6 531 577 189 30.0 1e-47 MTDEQTTTAAAPRRNGGDLAVETLHALGARTVFGIPGQHALGLFDALSRSPLEFVSNRVE NNAAFAADGYARATGEVGVLFLSTGPGALTSLAGLQEAYATGVPMLVIASQIPLSGLGAR RKGMLHQLDDQKASARNVTKAQFTVHHASGIPSAIQDAWAEAITVPQGPVWVEIPQDVLL GEVMVPPVEDALAVPYDHPPRAELVAESVRWLRGAERVAIVAGGGVRRSGRAAMASLREV AELLQAPVVCSPGGNTAFPWEHPLSLGGWVEDRLVTDLLEDAEVLLVVGSSLGEVTSNYF TLEPRGRLIQVDAEPRVLETNHPTLGVRADAGQALEALAAALRESGSVARDAAVWHGRTP AEVVADVNARITARLDAQDLGVERRLLADIRAAVPSTMQTYWDMTIAAYWAWNCWDAQDG EFHSAQGAGGLGYGFPAAFGGAVGLAHQGRTGIDGRVLAVAGDGSAMYSLAELAAARQHG AAVTWLIIDDGGYGILREYMEGAFGKATATELDRPDFQALAASFGVPAETVGVKDVRGAL ERAFQADGPNVVVVQTRLAMWAPSHLGEAPEV >gi|289558713|gb|ADCD01000004.1| GENE 23 26456 - 27472 943 338 aa, chain - ## HITS:1 COG:PA1421 KEGG:ns NR:ns ## COG: PA1421 COG0010 # Protein_GI_number: 15596618 # Func_class: E Amino acid transport and metabolism # Function: Arginase/agmatinase/formimionoglutamate hydrolase, arginase family # Organism: Pseudomonas aeruginosa # 15 322 8 313 319 249 41.0 5e-66 MLEIPRVEDNGRLGPVNSALVPRYGGAPTYALLPRLDEAAAAGVAPEIKVVGVPFDAGVS YRPGARFGSGHVRQSSRLLRPYNPATDTSPFAQAQVVDAGDMAVNPFNIGEAIEAIQQDA MDLTEDGSSLMTIGGDHTIALPLLRAASARAGEPVALLHFDAHLDTWDTYFGAEYTHGTP FRRAVEEGILDTEAISHVGTRGPLYGKKDLDDDHRMGFGIVTSSDVFRQGVDEIVDQLRQ RIGGRPLYISVDIDVLDPAHAPGTGTPEAGGITSRELLEILRGLRGLDIVGADLVEVAPA YDHAELTGVAASHVAYDLISLMADRRATRAAAGEEPGR >gi|289558713|gb|ADCD01000004.1| GENE 24 27553 - 28122 510 189 aa, chain - ## HITS:1 COG:DR1029m KEGG:ns NR:ns ## COG: DR1029m COG1396 # Protein_GI_number: 15807634 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Deinococcus radiodurans # 13 183 15 184 190 144 46.0 7e-35 MKALPLETAPGQALIGRRLRALREARRLTVAQLAEAAGVSKGFLSRLERDLTSPSVSTLV TLCQVLGASPGDVLDAPEVTVVRLADAPAISLGGEGIRERLITPRGRRDLQILRADIAPH GRGEAELYTVDCRVEAVHVVTGRLELRTTEAVHLLEEGDTVTLPGREPHSWANPDDRPAV VLWTLVGHA >gi|289558713|gb|ADCD01000004.1| GENE 25 28351 - 29817 1382 488 aa, chain + ## HITS:1 COG:PA1418 KEGG:ns NR:ns ## COG: PA1418 COG0591 # Protein_GI_number: 15596615 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Na+/proline symporter # Organism: Pseudomonas aeruginosa # 1 461 15 453 463 343 48.0 3e-94 MLAFGWWGKTRAASSEDYLVAGRRLGPLLFTGTMAAVVLGGAATVGGVGLGYEFGLSGAW LVAAIGVGVLILSVAFAPILARLKIYTVSQMLRLRYGRGGASHASSFVMLAYTLMLAATS TGAYASIFVVLFGWDRWLSVLVGGGIVLAYSVLGGMWSITLADMAQFLIMTIGLFALMLP LSLANAGGWSAMQERLGAEFFSWDGIGVQSIITYVVVYTLGLLIGQDVWQRVFTARSPRV AQIGGATAGLYCIAYGVAGAVIGMAARTVTADIATTDDVFAWVAQNLLPVGVGGVALAAA VAAMMSTASGAIIAASTVMRTDILPILRGEATASEDGATAEDEAPETAAELASNRGWVLL LGAVVLGLAIVVPDVVAALTIAYDILVGGLFVAIVGGLVWKRGTGTAALWSMVVGTVGTL GTMGWLELNAAEPFEGVFANEPIYVGLAASAVVYVVLSLMTPPTDPAVLEAWRVRSRHGV DPAVRAQV >gi|289558713|gb|ADCD01000004.1| GENE 26 30016 - 31209 1141 397 aa, chain + ## HITS:1 COG:RSp0053 KEGG:ns NR:ns ## COG: RSp0053 COG1063 # Protein_GI_number: 17548274 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Threonine dehydrogenase and related Zn-dependent dehydrogenases # Organism: Ralstonia solanacearum # 3 396 2 396 398 427 54.0 1e-119 MTTKNRAVAFHGIKDVRVDELDFPKLEMPNGSAAPHGVILKIVATNICGSDLHIYRGSFP VPEGMVLGHEMTGQVLEVGSDVQFLKEGDLVSVPFNVACGRCRNCRAGRTEICETANPEQ ACAAYGFNLGDFQGGQAEYLFVPYADFQLLRFPDQEQAMEKILDLAVLSDILPTAFHGLM AAGAKPGSTVYIAGAGPVGRCAAAAARLLGASCIIVGDQDASRLELVRKHGCETIDLSVT ENLQDAVNDILGEPMVDCAVDYVGSEAHGLGSESDEMQPIAAVNQVLDITRPGGATGIIG IYGPDPIAETKAEQEGTFPVDFGKAWIKSPHIIGGQAPIMRYNRQLMMSILWDRMPYLTE MVNPRVISLDEAPQAYAEFDQGSVDKFIIDPHGMIAR >gi|289558713|gb|ADCD01000004.1| GENE 27 31285 - 31608 186 107 aa, chain - ## HITS:1 COG:no KEGG:Mlut_04310 NR:ns ## KEGG: Mlut_04310 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 106 1 106 107 149 97.0 3e-35 MRLHHDPGLQPERTVMSWGRTVLALGVLSLTFLRWWPAVGAWAFGPAVVAAVGGAAVLAT QRRRYVAQADGIAREQVRPALASVACMVALVVGLAALGITATLLHAT >gi|289558713|gb|ADCD01000004.1| GENE 28 31613 - 32512 398 299 aa, chain - ## HITS:1 COG:Cgl0103 KEGG:ns NR:ns ## COG: Cgl0103 COG2149 # Protein_GI_number: 19551353 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Corynebacterium glutamicum # 179 280 4 105 122 108 50.0 1e-23 MDGLVRRHALGGVLVLRVGSVGLGALSQGQHEHGAEDPREPAQQDAVQGGARRVLGVLAQ EGPPVLFVAALGLGEAEQDVAVHAVLASGDVAVDLALGDLVGEVAAPASDLFAGRLGACR RRGGVGGAHGAPSDGRAGTGGAVAAGRARPASLRRRYHGRMDAAETPDGPETAAHDGGRP AWQHRLLAGGVEPDPRFTLANERTFLAWVRTSLALLAGGVAVEAFTGALFAPPVRVALST VLLVLAALLALGAGARWLRVERAMRRGRPLPLPLIVPVLAGGVVLAVVVLLAAVVLPRG >gi|289558713|gb|ADCD01000004.1| GENE 29 32126 - 33256 987 376 aa, chain + ## HITS:1 COG:Cgl2230 KEGG:ns NR:ns ## COG: Cgl2230 COG1814 # Protein_GI_number: 19553480 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Corynebacterium glutamicum # 14 372 5 354 357 338 54.0 1e-92 MSPAHTATPAARPEPTREQVRRWRRYLADEIAEGQIYRDIAARKDGVDRDILLGLAEAER RHEQHWRALLGEHAENPPRPSLHRVLLRWLARIFGSVFVLALAQRAESDTPYAKDQDAPE GMAADEAIHEEVVRGLAARGREQLAGNFRAAVFGMNDGLVSNLALVMGIGATGVAPSVVL FTGVAGLLAGALSMAAGEYVSVRSQRELLEASSPTQITLEAAQHLDLDHNELKLVYLARG MTPEDAEHRALERLGYLTCDCNPQFSARPDGSQGPVDHSDSFAEIGSAWSASLSSFAFFA SGALIPILPYIFGMSGLWALGLAAAMVGAALLFTGGVVGLLSGSSPLARGLRQLAIGFGA AAVTYVLGLLFGANVG >gi|289558713|gb|ADCD01000004.1| GENE 30 33158 - 33427 121 89 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MAAAFRSHDTEQSDTATAGRPTAVGALFGALEEPSRREDGEDRRLFSWPGRQTALPASAH VRAEEQAQHVRHGGGAEADRELAQAPGQR >gi|289558713|gb|ADCD01000004.1| GENE 31 33435 - 34142 382 235 aa, chain - ## HITS:1 COG:no KEGG:Ndas_1076 NR:ns ## KEGG: Ndas_1076 # Name: not_defined # Def: ABC transporter membrane protein # Organism: N.dassonvillei # Pathway: not_defined # 1 234 1 241 242 178 53.0 1e-43 MFAIARSEMTQLVRNRLVAASSLFVPLAFSAVLIFNRENFGGTAVAAALILVTVTAMGTY VTATTTLASRRQNLFLKRLRSTSAKDASILSGLVLPIALVDLVQAGVIVAILSVVGTPPV GVVAVVAAVVVLELMFVGAAIATAGLTNSPDHAQVTTLPLFVVALGAAMWVGLTGTEELA GVKRLLPGGAVTELIVEGWSGMALHETVSLLLPSLAFVVAAFAMAKSTFRWEPRA >gi|289558713|gb|ADCD01000004.1| GENE 32 34189 - 35118 306 309 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 26 304 7 298 311 122 29 3e-27 MQNTTLRTTPAAPTADGVRSETVVEMKDLRVDYGDFTAVDGIDLEIRRGEFFGLLGTNGA GKTTTIEVMEGHRVPTAGSVRVLQQDPSDRTLRRRVGIMLQESGFAPDLTVRETLALIGR LTRRDDDVDRVLDLVDLRRRRDTRTGQLSGGEKRRLDFATAIFGSPELIFLDEPTTGLDI EARDALWHVVDRLRDEGATILLTAHYLEEAQERADRIALMHSGRIHRQGTVAELTSAFPS TISFRLNGELTVPFEDATTAPGGAVTIPTTNLQEDLYRLLVWSRSRDVELEGLNVGAEGL ESLFRALNA >gi|289558713|gb|ADCD01000004.1| GENE 33 35212 - 35706 187 164 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MAATPKTASRTKLVLLRSLRVSDVCSEVMGTPCSVSAWIGCPSGGHLRLSLDGLVAGREP HSGRDDGDHHADDQPGGVGGSARGDPGGDLRGQDLGDGQVVQRQHDAERGGTEEQDECDG PDGLHGSLPCPLSMVFLSSSAPIGGVADSIGTTSTLPTCLLFCQ >gi|289558713|gb|ADCD01000004.1| GENE 34 35621 - 36730 593 369 aa, chain + ## HITS:1 COG:CC1149 KEGG:ns NR:ns ## COG: CC1149 COG4585 # Protein_GI_number: 16125401 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Caulobacter vibrioides # 61 348 93 376 399 95 31.0 2e-19 MTSEHTSETRRLRSRTSFVLLAVFGVAAIVALLTSAVEPWPPLVLAPGLIAGLWLLSQWH REVAAPTRWAVLALGTLTWALSALWELTPLGALAFALAGALEVMWSRRTRAVMTLLTLTV GAAVGVLVVVTDPQALWVYVGMGALLTGAACVTIPDSRASFDLMRLQDQRAEQERAASVD AERLRFSQDLHDIQGHALHVVKLKIAVAQRLLSTDTEAARRELDEAQQTLRQTMAETKAL AQDGHTLTLRGELANSVSLLKAAGITVTTDDDGGPRTEEFEHVAGVVIREGTTNILRHSD ARRVDISLAPGHVVMSNDGVLAVPAEDHRGGLENLRSRLAGVGGRLDVSCGDGRFTLGAR WEADEEESV >gi|289558713|gb|ADCD01000004.1| GENE 35 36700 - 37335 419 211 aa, chain + ## HITS:1 COG:Cgl0925 KEGG:ns NR:ns ## COG: Cgl0925 COG2197 # Protein_GI_number: 19552175 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Corynebacterium glutamicum # 13 211 2 203 203 144 44.0 1e-34 MGSGRGGVGVNDIRIVLADDEKLLRTALATLLEMEGGIRVEEVAADGNEAVEAVRRIDPD MLVTDMEMPGLDGVAAVATLRETHPDLPVVMLTRHARPGVLRRALKAGVTGFVTKSAEPE EIADVIRRVNSGQRWIDPDTTARAISDDCPLTDRELDALRATGEGYSVARIAQQLHLAEG TVRNYLSSAMQKTQTSTRHDAARFARRHEWL >gi|289558713|gb|ADCD01000004.1| GENE 36 37454 - 38224 570 256 aa, chain - ## HITS:1 COG:ML0156 KEGG:ns NR:ns ## COG: ML0156 COG0074 # Protein_GI_number: 15826979 # Func_class: C Energy production and conversion # Function: Succinyl-CoA synthetase, alpha subunit # Organism: Mycobacterium leprae # 3 252 52 297 300 328 77.0 4e-90 PRDKDGNAVELPSSARQGGHEKTGADVSVAFVPPAFAKDAAIEAIEAEIPLLVVITEGIP VQDSAEFFALSQSKTGEDGKPKTRIIGPNCPGIITPGEALAGITPATITGTGPIGLVSKS GTLTYQMMYELRDFGFSTAIGIGGDPVIGTTHIDALEAFEADPDTQAIVMIGEIGGDAEE RAAEFIKANVTKPVVGYVAGFTAPEGKTMGHAGAIVSGSAGTAQAKKEALEAAGVKVGKT PSETAQLMREILQAQA Prediction of potential genes in microbial genomes Time: Thu May 26 06:47:36 2011 Seq name: gi|289558684|gb|ADCD01000005.1| Micrococcus luteus SK58 ctg1119142780313, whole genome shotgun sequence Length of sequence - 19001 bp Number of predicted genes - 27, with homology - 23 Number of transcription units - 8, operones - 4 average op.length - 5.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 3 - 405 181 ## Mlut_09260 DNA protecting protein DprA 2 1 Op 2 . - CDS 402 - 1814 796 ## COG0606 Predicted ATPase with chaperone activity 3 2 Tu 1 . + CDS 1984 - 2292 201 ## gi|289704567|ref|ZP_06501000.1| conserved domain protein - Term 2677 - 2730 15.2 4 3 Op 1 . - CDS 2851 - 3141 122 ## gi|289704569|ref|ZP_06501002.1| hypothetical protein HMPREF0569_1177 5 3 Op 2 . - CDS 3141 - 3491 219 ## gi|289704570|ref|ZP_06501003.1| phage terminase, small subunit, P27 family 6 4 Tu 1 . + CDS 3790 - 4314 -144 ## + Term 4368 - 4429 6.0 7 5 Tu 1 . - CDS 4373 - 5227 675 ## gi|289704571|ref|ZP_06501004.1| conserved domain protein 8 6 Tu 1 . + CDS 5226 - 5552 106 ## + Term 5669 - 5714 0.0 9 7 Op 1 . - CDS 5773 - 6276 97 ## 10 7 Op 2 . - CDS 6276 - 8303 1041 ## Krad_4702 hypothetical protein 11 7 Op 3 . - CDS 8333 - 8608 162 ## gi|289704577|ref|ZP_06501010.1| hypothetical protein HMPREF0569_1185 12 7 Op 4 . - CDS 8617 - 8853 120 ## gi|289704578|ref|ZP_06501011.1| hypothetical protein HMPREF0569_1186 13 7 Op 5 . - CDS 8925 - 9140 152 ## gi|289704579|ref|ZP_06501012.1| conserved hypothetical protein 14 7 Op 6 . - CDS 9233 - 9607 164 ## 15 7 Op 7 . - CDS 9600 - 11036 545 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs 16 7 Op 8 2/0.000 - CDS 11046 - 11309 80 ## COG0606 Predicted ATPase with chaperone activity 17 7 Op 9 . - CDS 11306 - 11725 305 ## COG0792 Predicted endonuclease distantly related to archaeal Holliday junction resolvase 18 8 Op 1 . - CDS 11860 - 12243 370 ## Mlut_09230 hypothetical protein 19 8 Op 2 4/0.000 - CDS 12300 - 12935 406 ## COG0164 Ribonuclease HII 20 8 Op 3 2/0.000 - CDS 13049 - 13567 344 ## COG0681 Signal peptidase I 21 8 Op 4 5/0.000 - CDS 13645 - 14388 396 ## COG0681 Signal peptidase I 22 8 Op 5 33/0.000 - CDS 14425 - 14778 601 ## PROTEIN SUPPORTED gi|239917436|ref|YP_002956994.1| LSU ribosomal protein L19P - Prom 14964 - 15023 1.6 23 8 Op 6 30/0.000 - CDS 15027 - 15773 545 ## COG0336 tRNA-(guanine-N1)-methyltransferase 24 8 Op 7 12/0.000 - CDS 15777 - 16379 188 ## PROTEIN SUPPORTED gi|163796730|ref|ZP_02190688.1| 50S ribosomal protein L19 25 8 Op 8 19/0.000 - CDS 16484 - 16723 217 ## COG1837 Predicted RNA-binding protein (contains KH domain) 26 8 Op 9 23/0.000 - CDS 16726 - 17172 709 ## PROTEIN SUPPORTED gi|239917432|ref|YP_002956990.1| SSU ribosomal protein S16P 27 8 Op 10 . - CDS 17372 - 19000 1363 ## COG0541 Signal recognition particle GTPase Predicted protein(s) >gi|289558684|gb|ADCD01000005.1| GENE 1 3 - 405 181 134 aa, chain - ## HITS:1 COG:no KEGG:Mlut_09260 NR:ns ## KEGG: Mlut_09260 # Name: not_defined # Def: DNA protecting protein DprA # Organism: M.luteus # Pathway: not_defined # 1 134 1 134 424 182 98.0 3e-45 MTTHVTPAADHVPVAGPRRPDAARLARAALTRLVEPGDALAVQTVTALGPERALALLTGR ETIQPAERDLLADLAGTPDTLPRRWAAGLARWAPRAARLEPERDLVTLHRLGGGLLIPED DAWPAALADLGEEA >gi|289558684|gb|ADCD01000005.1| GENE 2 402 - 1814 796 470 aa, chain - ## HITS:1 COG:Rv2897c KEGG:ns NR:ns ## COG: Rv2897c COG0606 # Protein_GI_number: 15610034 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted ATPase with chaperone activity # Organism: Mycobacterium tuberculosis H37Rv # 36 464 101 498 503 270 46.0 6e-72 MFQHRRGILTFGRLSCTNALAIVLAAYAADGRVRNVEGPVFLAELGLDGALHRSPETVAM VMAAVDAGCSEVVVAEDAEAEARLVPGAEVRGFAHLHDVIRAFGGEPDGEVPRRPARRQV TAPEPEPARAVPDLAEVAGQAEARFALEVAAAGAHHLLLMGAPGAGKTMLAERLPGILPP LDRRTALECAALRSLRGGDARVRRRGGTSQGFDGDIDRTPPFEAPHHSASRSALVGGGSG LARPGAASLAHGGVLFLDEAPEFERRTLEALRQPLESGEVLLHRALGAVVYPARFQLVLA ANPCPCGKGGGTGVECRCSVPERRRYAQRLSGPLLDRVDLQVTVRPVEARQLTGAPASET TSQVAARVAAAADRQARRWATAAERGLVPSGLRRNAHVPAGVLRHGPYAVPRAARRPADD AVDQGLLSARGHARVLRLAWTLADLRGAERPAPEDTDVALTLRHQNEEDA >gi|289558684|gb|ADCD01000005.1| GENE 3 1984 - 2292 201 102 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289704567|ref|ZP_06501000.1| ## NR: gi|289704567|ref|ZP_06501000.1| conserved domain protein [Micrococcus luteus SK58] # 1 102 1 102 102 183 100.0 4e-45 MGDYYQDNAARVLAHIGAHPDVDPDPLADTGRAHHGDMHAGVMVGQDGTIHAHTRRDASG TYRVHLPGEDVPVDLWAARERRVIGPTVHVPLWRIFSSQGVP >gi|289558684|gb|ADCD01000005.1| GENE 4 2851 - 3141 122 96 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|289704569|ref|ZP_06501002.1| ## NR: gi|289704569|ref|ZP_06501002.1| hypothetical protein HMPREF0569_1177 [Micrococcus luteus SK58] # 1 96 1 96 96 155 100.0 1e-36 MRRRRHSAVPALAAYYQAGTFPEFDPADWEGDTLYARWEAWHAAQTWTDALTADDLTAWA DYAASVAPTMTGDDWVRAVGVDARRGGHVVKNRVVV >gi|289558684|gb|ADCD01000005.1| GENE 5 3141 - 3491 219 116 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|289704570|ref|ZP_06501003.1| ## NR: gi|289704570|ref|ZP_06501003.1| phage terminase, small subunit, P27 family [Micrococcus luteus SK58] # 1 116 1 116 116 193 100.0 3e-48 MTDDHSAPRAPRGLKAGGKRLWRAVTEEFELGEHELSVLLQASRTVDALDELERIVIAEG VTHDSPQGVRAHPALVEARQQRITLAKLVASLRIPLDDEQSAGRLPQQRVGIRAVR >gi|289558684|gb|ADCD01000005.1| GENE 6 3790 - 4314 -144 174 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MAPGGRSPIHSGRWREPRDGSCASSSAQLGGYVLAASAVARATDDADVSQHVLTSESVRD DVVGLGAVGSARLFVVKAHTTQRAISQLFAVRPLEGLAAETTPHGGGGTAGLAHGGLSIS RWGEVVAAPADGDGRGDGERATEWKEGGYLSGSPAVVFPGAQDGLSPKRGGSRP >gi|289558684|gb|ADCD01000005.1| GENE 7 4373 - 5227 675 284 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|289704571|ref|ZP_06501004.1| ## NR: gi|289704571|ref|ZP_06501004.1| conserved domain protein [Micrococcus luteus SK58] # 1 284 1 284 284 437 100.0 1e-121 MNTTTLDTNATVNGYTTAAEALDLPALELPTLAPLTPSMTATEAHARAVDLLAAGDDPIK DSALKRYATEAALRQAVHLDAAWNEAHTRRRLDAIAAHGEAHLPDLLERFNVAAQALEDA AANPGALATTDPGTFTVLDRSDAATLARQIAPHLGFVQLAHAHAPALLDGLSKTVRTIMN PMQHTQWATVRPVAEHVDTLSPRGEVPTVTGNAAWDAALCPGVVFDLATSPDDLAAREAE FQAARTRQHMRDTIAEEERRYGTRAARQEEGQAMLRAMATQAGA >gi|289558684|gb|ADCD01000005.1| GENE 8 5226 - 5552 106 108 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSVPFCGVLVVLVGGALGGARSVVMWSVSGGFCGVDHVGAHAGEFVHREDERGLPGDDQG DAGVTCALGVGHLGRGRMGSAGRGPVVLPVVFAGHERGAGGHGVSPPG >gi|289558684|gb|ADCD01000005.1| GENE 9 5773 - 6276 97 167 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVPRVVPVPVLKRRDRNHSREPVPGGTGTTGNHWDPLGAPLDGPENPHWEPPGTTHPPAN PRPSTLARSGAVVVPRRTDEHHHHPADPARPHSRPPVSPRRAERHSGRPRRQQRKGAQPM TTTERPTEADNLRQQLRFHMDRAERHRLRAERAEAELAEMKKELTAR >gi|289558684|gb|ADCD01000005.1| GENE 10 6276 - 8303 1041 675 aa, chain - ## HITS:1 COG:no KEGG:Krad_4702 NR:ns ## KEGG: Krad_4702 # Name: not_defined # Def: hypothetical protein # Organism: K.radiotolerans # Pathway: not_defined # 321 671 448 809 891 231 42.0 9e-59 MHAAGVNVIPVRHDGTKAPALKAWQSHRTTAADLDAWFGGDDPRHRAIGAACGALSGGLE MLEIEGAHVGLLEDVGRAAGAAGLLELWERVNGGWCERSPSGGVHWFYRVEGMDVPGNVK LAATEARQTIAETRGQGGQVVLAPSGGTTHKTGRAWERLDGGPATVPTLTAAERETLHGL FRALDRAPARTVEHRPASTLAPADGARPGDLYAARTTWDELLTRHGWQVHHRAGAETHWT RPGKSTAEGPSATTREDGGLYVFSTSTAFDPETPYSKFGAYAVLEHGGDHAAAARALAAE GFTERPVAPRTAPAPEAVTEAPGAVTEAEPPSRPSWSPVDLSAYLDGTATAVEPSLMART DGVKLLYPGHVHSVAGESESGKSMLMLAVAAQVLTDGGRVLFMDYESDPATVLDRLVKLG APVDAVAERLDYVQPEADPDNGGWSDVSAFLGLLERRYALAVLDGVTEALSVSGVPSIDN DEVTGWIRRLPRRIARTTGAAVVMVDHVTKSTEGRGRFAIGAQAKLSALDGASFLVEPLA PLGVGMAGKLAVRIGKDRPGRVRPHGGSWRKSDRTQAVAVALIDSTDPSRIVFTLEAPAR EVAPEVHAAQVDADRRAAVLAWVRDCPSPPSLNSICSAVPGRKQDTTATVRELVEAGQLL TSPGPNRSTLHHLPA >gi|289558684|gb|ADCD01000005.1| GENE 11 8333 - 8608 162 91 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|289704577|ref|ZP_06501010.1| ## NR: gi|289704577|ref|ZP_06501010.1| hypothetical protein HMPREF0569_1185 [Micrococcus luteus SK58] # 1 91 5 95 95 168 100.0 9e-41 MKKGRPVAHGAAPSKKITTAILPRPADLLNGVFVVLVARQSAGEVRYRRSVYFNLPAAQR AQDRAVMRGQTASITLCRLTPVHEFDGGYAS >gi|289558684|gb|ADCD01000005.1| GENE 12 8617 - 8853 120 78 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|289704578|ref|ZP_06501011.1| ## NR: gi|289704578|ref|ZP_06501011.1| hypothetical protein HMPREF0569_1186 [Micrococcus luteus SK58] # 1 78 26 103 103 140 100.0 2e-32 MIRAMSKRDAVTFLHRHIGVTTSWAERHLKALGNMHPHEFAQALALGGAPAHVLHGFDPT GNTAARNVDMERAGVNPA >gi|289558684|gb|ADCD01000005.1| GENE 13 8925 - 9140 152 71 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|289704579|ref|ZP_06501012.1| ## NR: gi|289704579|ref|ZP_06501012.1| conserved hypothetical protein [Micrococcus luteus SK58] # 1 71 1 71 71 84 100.0 2e-15 MSWTAERARVASLSRSRTPDDPELLDARRNLAAERLALYVARVVAEAPPLTDAQRDRIAA LLRPTKARDAQ >gi|289558684|gb|ADCD01000005.1| GENE 14 9233 - 9607 164 124 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSEAIEVFIYCASGPRHPGKRKPVETFRKPTGLFAAGEWSPVGRGGAEGQAILRDAPAPA GWALDPENDAADHRTRHVLKCPRCGNASAVTVRSEVLSRALEQIAASGVSEFDLYQLGAI LSNR >gi|289558684|gb|ADCD01000005.1| GENE 15 9600 - 11036 545 478 aa, chain - ## HITS:1 COG:Rv1586c KEGG:ns NR:ns ## COG: Rv1586c COG1961 # Protein_GI_number: 15608724 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Mycobacterium tuberculosis H37Rv # 8 473 9 469 469 168 33.0 2e-41 MTKRKATAAIYVRISRDADGRAAGVERQEADCRALAERMGLTLHPRVFKDNDIGASSRSR KARPAFRELLEAVEAGEVNVILAYSNSRITRRPLEWESLIRLSETHGLQVHTVVSSSAQF DTADGRMVLRVLAANDAAEADRISERVTRAKQQRLEEGAFRGGPRPFGYEADGMTIRETE AQALREAAGRIVAGESLRSVTADLRDRGFKGTRRADSGLQPVQLRRILLRPRNAGLVEHY GKVTGPAAWPAILSEDEWQAVRSVLTDPARKTNHGSNRVKHLGSSLFRCGVCGDHVRASA ASRGYRVYRCKTGAHVSRAQEPIDHFIREVMAARLRADPDVLRREDDVDDAAPNEIRREL STLRARRAQLADDYADGLLDGAQVKAAGARIDAKIEAAAAELARLTSASVLSGLADAEDA GNAFLAAPIGAQRAIVDALATITIYPAGKKGRPAGWQTGDHYIDLETVQITWKGSDDE >gi|289558684|gb|ADCD01000005.1| GENE 16 11046 - 11309 80 87 aa, chain - ## HITS:1 COG:DR1656 KEGG:ns NR:ns ## COG: DR1656 COG0606 # Protein_GI_number: 15806659 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted ATPase with chaperone activity # Organism: Deinococcus radiodurans # 4 84 22 102 519 77 48.0 7e-15 MSGIGRTRSITLAGLRGEVVHVEADIAQSLPGFTLLGLPDQALQESRDRIRSAARNAGLP LTRRHLTVNLLPAGVHKRGACHDLARG >gi|289558684|gb|ADCD01000005.1| GENE 17 11306 - 11725 305 139 aa, chain - ## HITS:1 COG:TP0913 KEGG:ns NR:ns ## COG: TP0913 COG0792 # Protein_GI_number: 15639898 # Func_class: L Replication, recombination and repair # Function: Predicted endonuclease distantly related to archaeal Holliday junction resolvase # Organism: Treponema pallidum # 25 122 8 116 126 63 39.0 9e-11 MTGTAERIGAQPPGDRRASRAHTALGRFGEDAAARWLAERGYVIADRNWRGEAGELDIVA HHAGWWVGVEVKTRSGLAFGDPFESIDRRKLTRLHRLTAAWVRAHAADRRGTPWRVDAVA VLVPRTGGIRFDLLQDVRP >gi|289558684|gb|ADCD01000005.1| GENE 18 11860 - 12243 370 127 aa, chain - ## HITS:1 COG:no KEGG:Mlut_09230 NR:ns ## KEGG: Mlut_09230 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 21 127 1 107 107 192 100.0 4e-48 MEAVRARTVAGARRTLRRHVMSADDVEDFEAEAELLLYREYRDVVGLFRYVVETERRFYL ANDVRLTPRQADGDVFFEILLEDAWVWDVYRTQRFIKRVKVLTFKDVNIEELPTEDLTVP PDGQLPS >gi|289558684|gb|ADCD01000005.1| GENE 19 12300 - 12935 406 211 aa, chain - ## HITS:1 COG:rnhB KEGG:ns NR:ns ## COG: rnhB COG0164 # Protein_GI_number: 16128176 # Func_class: L Replication, recombination and repair # Function: Ribonuclease HII # Organism: Escherichia coli K12 # 1 194 15 187 198 103 42.0 3e-22 MDEVGRGALAGPVVVGVCAVWLPAAGQIPPVRDSKALTDRRRRVLIPQIEDWAAGVALGE AGPAEIDALGISAALGLAGRRAWAALCAAVGQEPVALVLDGRDDWLSRSDPDAGPAPAPR PLPPEPTMLVRAEDRCATVAAASIAAKVARDDVMIALDAAHPGYGWAGNKGYGSAAHRAA LAERGASEQHRRSWNLGLPGAPAEGPPTLFD >gi|289558684|gb|ADCD01000005.1| GENE 20 13049 - 13567 344 172 aa, chain - ## HITS:1 COG:ML1612 KEGG:ns NR:ns ## COG: ML1612 COG0681 # Protein_GI_number: 15827848 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal peptidase I # Organism: Mycobacterium leprae # 2 154 78 282 289 86 33.0 2e-17 MYAIPSSSMEPGLRAGDRVVATLLTPDPFPVRRGDVVVFEDTKGWLPGGGHVIKRAVGLP GDTISWTPGEETLRVNGVPVEEPYLAPGETPAQEAFEVTVPAGRLWVLGDHRSASADSRA HRAGPGGGFVALDDVVGRARFVVWPLDRIGGAGADPDAFAAVPDAPAPEART >gi|289558684|gb|ADCD01000005.1| GENE 21 13645 - 14388 396 247 aa, chain - ## HITS:1 COG:Cgl1987 KEGG:ns NR:ns ## COG: Cgl1987 COG0681 # Protein_GI_number: 19553237 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal peptidase I # Organism: Corynebacterium glutamicum # 15 243 13 259 262 107 31.0 2e-23 MRTSEPRDPRRSRGSVASGAGSSSSTTAAPASGASRWWAWLGLTVVAAVVVAAVLRALTG PVYLIPSGSMEPTLQPGDRVRVDAAAAGGQGLHHGDVVVFDGAGSLAPYRSAGSLERGLE DVARWWGVGAAEDVFVKRVLALPGDRLECCAPDGRLLRNGEPLDEPYLGRPVTADEPAAA GTWSFEVPDGRMVVLGDHRAASRDSRALLGAPGGGLIPLERVEGRAAEIVWPLARRGTVD VPSGDTP >gi|289558684|gb|ADCD01000005.1| GENE 22 14425 - 14778 601 117 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|239917436|ref|YP_002956994.1| LSU ribosomal protein L19P [Micrococcus luteus NCTC 2665] # 1 117 1 117 117 236 99 1e-61 MHILDSFDKKTLRDDIPEFAPGDTVKVHVNIIEGKTARVQVFQGYVMGRQGYGVRETFRV RKVSFGIGVERVFPVHSPVIDKIEVVTKGDVRRAKLYYMRDRHGKAARIREKRADAK >gi|289558684|gb|ADCD01000005.1| GENE 23 15027 - 15773 545 248 aa, chain - ## HITS:1 COG:Cgl2001 KEGG:ns NR:ns ## COG: Cgl2001 COG0336 # Protein_GI_number: 19553251 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA-(guanine-N1)-methyltransferase # Organism: Corynebacterium glutamicum # 1 248 15 284 292 233 51.0 3e-61 MRFDVVTIFPEYLAVLDVSLLGRARREGLVDVHVHDLRDFTFDRHRTVDDTPYGGGAGMV MKPEPWALALEHVAAQGSAAPATAEPSSAEPGDRPVLLVPTPSGERFTQRFARELAGREH VAIACGRYEGIDERVFGWAEELFDVRLVSLGDYVLNGGEVAALAMIEAIGRLVPGVVGNP ASLVEESHEDGLLEYPVYTKPADWRGRAVPPVLLSGDHGKVAAWRRAQQEERTRERRPDL WAAYDSED >gi|289558684|gb|ADCD01000005.1| GENE 24 15777 - 16379 188 200 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163796730|ref|ZP_02190688.1| 50S ribosomal protein L19 [alpha proteobacterium BAL199] # 8 170 3 162 179 77 34 9e-14 MSPAAQDDLVRVARIGKPHGIRGEVTVQVFTDDPDARFAPGERLVVRDGAPGLPAELTVT RARWNKQILVVGFAESPDRNVAETLRGAQLFAVPAAPEESDEWYEEDLVDLEVRVEGERV GVVTALTTGAVQDLLHVALDGVEEEALVPFVEEIVPEIDPEAGVLVLTPPPGLLELATGE DEDAADGPAAARPADADPED >gi|289558684|gb|ADCD01000005.1| GENE 25 16484 - 16723 217 79 aa, chain - ## HITS:1 COG:MT2976 KEGG:ns NR:ns ## COG: MT2976 COG1837 # Protein_GI_number: 15842451 # Func_class: R General function prediction only # Function: Predicted RNA-binding protein (contains KH domain) # Organism: Mycobacterium tuberculosis CDC1551 # 1 77 4 80 80 77 61.0 8e-15 MLTEALEHLVRGIVDTPEAVRVDARSQRRGDMLEVRVAPEDLGRVIGRQGRTATALRTVL DGLAGHPVRVDVVETDRRS >gi|289558684|gb|ADCD01000005.1| GENE 26 16726 - 17172 709 148 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|239917432|ref|YP_002956990.1| SSU ribosomal protein S16P [Micrococcus luteus NCTC 2665] # 1 148 1 156 156 277 91 3e-74 MAVKIRLKRFGKIRAPFYRVVVMDSRTRRDGRAIEEIGKYHPTEEPSFIEIDSERAQYWL SVGAQPTEQVAALLKVTGDWQKFKGESGAEGTLKSKSEKEAFVAPEKGSVILPEEPKQEE APAESEQAAEAPAEEAAETPAEDAEKSE >gi|289558684|gb|ADCD01000005.1| GENE 27 17372 - 19000 1363 542 aa, chain - ## HITS:1 COG:ML1622 KEGG:ns NR:ns ## COG: ML1622 COG0541 # Protein_GI_number: 15827854 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal recognition particle GTPase # Organism: Mycobacterium leprae # 15 460 1 443 521 533 67.0 1e-151 RPAQSTPLRRITPAVFNSLSDRLTATFRSLKGKGRLSEADIDATAREIRRALLDADVAVP VVRQFIAQIKERALGAEVAQALNPGQQVVKIVNEELVGILGGETRRIQHAKTGTTVIMLV GLQGAGKTTLAGKLAHLLKSQGHTPLLVACDLQRPNAVKQLQVGGERAGVPVYAPHPGVS SEFEAATGDPVQVARDGVAEANTKYHDVVIIDTAGRLGVDAELMQQAADIRAAVDPDEVL FVIDAMIGQDAVATAQAFNEGVGFTGVVLTKLDGDARGGAALSVRHVTGKPIMFASTGEG LKDFEVFHPDRMASRILDMGDVLSLIEQAEQNWDRTEAEKMARKFADQEDFTLDDFLAQM QQLKKMGSLKKMLMMMPGAQGMRQQLEQFDESSIGRVEAIIHSMTPHERVAPKIINGSRR ARIARGSGVSVSEVNGLLERFAEAQKMMKRMAAGGGIPGMPGMPGGASRKAKGKGKNAKR DRVKSGNPAKAAAERKAIEERRARAAQAQAGAVFGRDGAGMEGFDPSTLNLPAGFEKYLK DR Prediction of potential genes in microbial genomes Time: Thu May 26 06:49:12 2011 Seq name: gi|289558673|gb|ADCD01000006.1| Micrococcus luteus SK58 ctg1119142780344, whole genome shotgun sequence Length of sequence - 11949 bp Number of predicted genes - 10, with homology - 10 Number of transcription units - 5, operones - 3 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 375 183 ## COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily 2 2 Tu 1 . + CDS 604 - 2739 2077 ## COG3211 Predicted phosphatase 3 3 Op 1 . + CDS 2856 - 4799 1436 ## COG1165 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase 4 3 Op 2 . + CDS 4844 - 6196 1127 ## COG0644 Dehydrogenases (flavoproteins) 5 3 Op 3 . + CDS 6193 - 7257 848 ## COG0142 Geranylgeranyl pyrophosphate synthase 6 4 Op 1 . - CDS 7301 - 7798 314 ## COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases 7 4 Op 2 . - CDS 7795 - 8286 477 ## Mlut_17700 hypothetical protein 8 4 Op 3 . - CDS 8296 - 9498 860 ## COG2962 Predicted permeases 9 5 Op 1 . + CDS 9458 - 10876 911 ## COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases 10 5 Op 2 . + CDS 10918 - 11947 795 ## COG0477 Permeases of the major facilitator superfamily Predicted protein(s) >gi|289558673|gb|ADCD01000006.1| GENE 1 1 - 375 183 124 aa, chain + ## HITS:1 COG:ML2268 KEGG:ns NR:ns ## COG: ML2268 COG4948 # Protein_GI_number: 15828213 # Func_class: M Cell wall/membrane/envelope biogenesis; R General function prediction only # Function: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily # Organism: Mycobacterium leprae # 1 120 203 318 334 77 46.0 6e-15 ADLIVVKVQPLGGVRRAAAIVAAAGLPAVVSSALDTSVGIAGGAALAACLPSLPHACGLG TAALFEHDVVAPAWRPRAGALPAPGERAPAPDPDLLDRVRADGARQAWWADRVRAAHAVL AAQG >gi|289558673|gb|ADCD01000006.1| GENE 2 604 - 2739 2077 711 aa, chain + ## HITS:1 COG:SMc02634 KEGG:ns NR:ns ## COG: SMc02634 COG3211 # Protein_GI_number: 15964842 # Func_class: R General function prediction only # Function: Predicted phosphatase # Organism: Sinorhizobium meliloti # 35 651 29 645 667 451 42.0 1e-126 MLKRLLPMAGHTRGNRSAVTCELKCGNACAHPVPNTSANPTFQQIAETAISRRSALVGGT GLAAAVVIGSQVAQAPEALADNGRRPTGGGKLPFEPIAPVSRTVDTMTVPEGYDWGTVIR WGDPLFADSPEFDIEHQTGASQAAQFGYNNDYLNIISDGGNDRSGYLVSNHEYTNENIMF SPEYIASNFEDVVNVGLQAHGLSIVDLQRAKRGAQWEYVRGGRRNRRITGTTEFEVRGPA AGHALLRTVEDPTGTRVLGTLNNCAGGTTPWGTVLSGEENFNQYFKGRGTAEEKRYGISA SATSRGWEKVHDRFDLTKPGYENEANRFGWVVEIDPEDPTSTPVKHTLLGRFKHEAGTAV ISPSGHAVVYSGDDERHDYLYKFVSAEKVREGDKKHNMRLMDKGTLYVARFSGDSPAAQI DGRGTLPSDGAFDGSGEWIALADEKTSFVPGMSLAEVLVYTRLAADKMGATKMDRPEDVE TNPVTGKVYAALTNNTKRTAVDEANPVIGNRDGHVLEITEQGGDHTSTAFTWVILLLAGD PAVSSSAYFAGYPKEKVSPISCPDNLAFDSEGNLWISTDGQPGTIGYADALHKVTLDGAE RGRVQQFLAVPRDAETCGPVIHDRDNSVFVNVQHPGEDGTWGAHTSSFPDFLSPTGPVQV GDKVAAPRPCVVQVFNATGNNGIGKGAGKEKGNKGKGNNGKGKGNGKGPKG >gi|289558673|gb|ADCD01000006.1| GENE 3 2856 - 4799 1436 647 aa, chain + ## HITS:1 COG:ML2270 KEGG:ns NR:ns ## COG: ML2270 COG1165 # Protein_GI_number: 15828215 # Func_class: H Coenzyme transport and metabolism # Function: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase # Organism: Mycobacterium leprae # 6 612 4 556 556 253 38.0 6e-67 MTSVDSLSVARAVATALIDAGMRDAVVCPGSRSAPLAYALAALERAGEVRLHVRVDERSA GFLAHGLSLASGRPVGVLTTSGTAVGNLLPALMESFHAGTRVIALTADRPPELHGTGANQ TTDQRGVFGTHVRHAASLGCDGADGVDAEQHLRNVRATVRRALLAADGVVAEAGSDDGAP GPVTMAEAPAGPVHLNLHFRDPLVPSPEEAAAMGAAAAAPHAPVPAVAPTGASLAPAAAS AYRAPGAVLSGLPELDVARLDQRRTVVLACHGAGPAAAAFALSLGLPLLAEPSSNARFSA NAIAAYPLLLGAAGGRDADAHPLAARIERVVLFGRPTLTRTVNALLARPDVATALHAPEP APWFEPGRRRETPVETLEELAAFAGQGEPGWLAAWQDASMRAQAAVEDVLVTTDAGDRLS PQTVAHVSAAMVRGPLVLGSSSVIRDVDLTWRPPSAPDAEVYANRGLAGIDGTVSTAAGV ALARGRRTVALLGDLTALHEAGGLLVGPTETEPDLDLVVVNDDGGAIFASLEHGAVAEAP GMADPVERLFGTPHGVDLAALAAAYGVPHTRVTDRVDLVRALSDPVRGRRLLEVRCDRAD RPRVAAALAAAVRATFPPACPVPDRAPDAGPAPAPPTAELAAEEAPQ >gi|289558673|gb|ADCD01000006.1| GENE 4 4844 - 6196 1127 450 aa, chain + ## HITS:1 COG:Cgl0465 KEGG:ns NR:ns ## COG: Cgl0465 COG0644 # Protein_GI_number: 19551715 # Func_class: C Energy production and conversion # Function: Dehydrogenases (flavoproteins) # Organism: Corynebacterium glutamicum # 5 426 9 399 424 165 31.0 2e-40 MRRADVLISGCGPAGATAAAHLAAAGLDVVVLEKTAHPREKVCGDGLTPQAVRELQLLGV PHRGEPGDDGGWRVIRGLRLRAGERSVDVPWAPTQTWPDYALTRTRRDFDALLADLARTR GAEVRERHAVTGVVQDEAGRVVGLDAELIAPNGRKTGQTARFTAPIVLACDGVSARAAVS AGLHRREDRPMGVAVRAYYTAGAAVDGAIPAPPGDRGEWMESWLRLPDAEGNPLPGYGWL FPLADGTVNVGLGILDTSPQFGKLDYRGLLKSWTGALTADWGIAEQTRTSRILGAALPMA FNRTPQHVPGMLLVGDAAGMVSPFNGEGIGFAMEAARLAADLAVQAHAAGTDGAADAILS RYPVITQHLWGRHFALGARFARLIGDPRVMKAALGAGMAAPPLLRAAVKVMGNTVDTRGG DAVDRAVRVLEALTPALTTAGGAPLGRLAR >gi|289558673|gb|ADCD01000006.1| GENE 5 6193 - 7257 848 354 aa, chain + ## HITS:1 COG:ML2277 KEGG:ns NR:ns ## COG: ML2277 COG0142 # Protein_GI_number: 15828220 # Func_class: H Coenzyme transport and metabolism # Function: Geranylgeranyl pyrophosphate synthase # Organism: Mycobacterium leprae # 33 352 23 328 330 216 46.0 5e-56 MTTADPGFALPSGFEPLAEHGRVLEVVLTALEQVEEQLDGALGFDDLFSDTAAHHLLAAG GKRVRPVLTVLASLLGDPALASGEVADVDAPARQAAVVMELTHLATLYHDDVMDEAPVRR GAPAAHRLWGNSAAILAGDLIFARASQLMAELGPRPVQIQADTFERLVQGQLWETRGPAE GADPIEHYYAVLSGKTGSLIAAAGMLGALLGGADEAAVQVMSAYGEKVGLAFQLADDLID LTGDAERIGKVPGTDLRERVPTLTTLLLARAAQGEGPEAEDARRVRALVDGPLDTDEQLT AAVAALTGHPAIDEAWAITRDWAEQAKQALTPLPDSAVKTALEAFADYVVGRSA >gi|289558673|gb|ADCD01000006.1| GENE 6 7301 - 7798 314 165 aa, chain - ## HITS:1 COG:BMEI0817 KEGG:ns NR:ns ## COG: BMEI0817 COG0537 # Protein_GI_number: 17987100 # Func_class: F Nucleotide transport and metabolism; G Carbohydrate transport and metabolism; R General function prediction only # Function: Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases # Organism: Brucella melitensis # 32 157 25 149 149 73 35.0 1e-13 MTALAPVSHAPDGYVCPFCGLVAGDVSDPGNRCELGDTVYQDEDLLVLIAVDGFGDHEGH AMVCPAEHYENLYDLPPRVLQRIALMAQQVALAMKRAWAPEGVSTRQHNEPAGNQHVWHY HLHVFPRFEGDMLYRQLRHPVTPEVRARKARELAAALDPAPTRLG >gi|289558673|gb|ADCD01000006.1| GENE 7 7795 - 8286 477 163 aa, chain - ## HITS:1 COG:no KEGG:Mlut_17700 NR:ns ## KEGG: Mlut_17700 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 163 1 164 164 270 96.0 1e-71 MPAKPPAPVYLPAFQRLVPDLLGDAWAEDDGLAPADVDARLAQSPAAEQLGAGLMIPAAL REFYLALGNCGDLMETDHYVWDPEDLEVRDGFLMFLEDADETVVWGLPVDNLTLPDPLVW RRSAGADAHEGAWQDEGGTFSEFLTDLLAWTFEDPEDDEGPDR >gi|289558673|gb|ADCD01000006.1| GENE 8 8296 - 9498 860 400 aa, chain - ## HITS:1 COG:YPO3836 KEGG:ns NR:ns ## COG: YPO3836 COG2962 # Protein_GI_number: 16123971 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Yersinia pestis # 100 390 8 296 296 201 41.0 3e-51 MMAMRNGRSGRTVTAGGSFSTTAEHAGGARGEARHRRAGSTPQSTGATGRNLGESAHPDR TVVRVSPSSPSARPGATPDGAAPDTGALPTVSPAPADDPRGLALGFTAYFVWGLLPLYMA VLAPAGAVEIVVVRIGFALIFCLLLLTVMRRLRELGTALATPGRWGATGLAAGVIAVNWL LYAVSVTTGNVLQASLGYFMNPLVNVLLGVLFLGERLRRGQWVAVGIAVAAVVVMSAAMG QVPWIALGLATSFGLYGFVKKRFPSPVHAVTAMTAETVVLIPVFVVGSVLLAQAGLLTTV TEGPGHFWLMAGLGVLTAVPLILFSAAARSLTLTTLGMLQYTAPILQFLVAVTVLGEQMP AARWAGFGLIWVSLAVFTLDQLHASRLQRRPARAEDGARA >gi|289558673|gb|ADCD01000006.1| GENE 9 9458 - 10876 911 472 aa, chain + ## HITS:1 COG:Cgl2757 KEGG:ns NR:ns ## COG: Cgl2757 COG0493 # Protein_GI_number: 19554007 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: NADPH-dependent glutamate synthase beta chain and related oxidoreductases # Organism: Corynebacterium glutamicum # 8 469 4 456 457 456 53.0 1e-128 MTVRPDRPLRIAIIGAGPAGVYTADILTKEERDFRVSIDLFDRYPAPFGLIRYGVAPDHP RIKGIVTALHKVMDRGDIRFLGNVDYGTDLSLADLRRHYDAIVFSTGAVRDAALDVPGVE LAGSFGGADFAAWYDGHPDVPRHWPLEATQVAVIGNGNVALDVARILSKHAEDLLPTEIP DNVYRDLAASPVTDVHVFGRRGPAQVKFTPLELRELAHSRDVDIVLYEEDFDFDAASEKA IEENNQVRTMVGTLTNWLMEQEDRQQSASRRLHLHFLQAPEEFLDEDGDGRVDGLRMRRM ELDGSGGVRPTGETVDYPVQAVYRAVGYFGSPVAGVEFDEVRGVIPNAEGRVLDADGAPV PGLYASGWIKRGPVGLIGHTKGDSLETITHLIEDEPGLWRAQEPAEESVIELLESREVPY TTWAGWHALDEHEKSLGAQATQAGPVARERVKVVDREEMTRISRDGASVPSV >gi|289558673|gb|ADCD01000006.1| GENE 10 10918 - 11947 795 343 aa, chain + ## HITS:1 COG:Cgl0123 KEGG:ns NR:ns ## COG: Cgl0123 COG0477 # Protein_GI_number: 19551373 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Corynebacterium glutamicum # 4 313 6 310 424 193 40.0 5e-49 MARLLVDITPLRVSPAYRRLWLGNTLSYVGTQLTLVAVSLEVFALTGSSFAVGLLGLAAL VPLVVAGLYGGAIADRHDRRRVALTSSAVMWLTTVGIAAQAWAGLESVSVLYALVALHSG ASGINQPTRGAIIPALVGLPLVPAANALNMMTFSVALMVGPMLGGVLVGAVGYAWTYSID VVTFLAALYAVWRLPSLPPQQAEAAAASGARGGLASVVEGLRFLGSRPNLRMTFLADIVA MTTAFPRALLPAIGAVVLGGGEAAVGVLLAAMAAGAFLAGLFSAPFTRLHAQGWGVYVSI LVWGGAVAAFGGVVWWARSLPDGDPRLTLAFALAALCMGAGGA Prediction of potential genes in microbial genomes Time: Thu May 26 06:49:17 2011 Seq name: gi|289558668|gb|ADCD01000007.1| Micrococcus luteus SK58 ctg1119142776933, whole genome shotgun sequence Length of sequence - 2995 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 2, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 4 - 765 561 ## COG0566 rRNA methylases 2 1 Op 2 . - CDS 839 - 1651 772 ## COG0730 Predicted permeases 3 1 Op 3 . - CDS 1681 - 2505 219 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 4 2 Tu 1 . + CDS 2592 - 2994 307 ## COG0560 Phosphoserine phosphatase Predicted protein(s) >gi|289558668|gb|ADCD01000007.1| GENE 1 4 - 765 561 253 aa, chain - ## HITS:1 COG:Cgl0802 KEGG:ns NR:ns ## COG: Cgl0802 COG0566 # Protein_GI_number: 19552052 # Func_class: J Translation, ribosomal structure and biogenesis # Function: rRNA methylases # Organism: Corynebacterium glutamicum # 15 249 35 270 276 138 38.0 8e-33 MTDAALRRRVDAEHGVFLAESSQVVRRALDAGHTPRSFLLGDRYRESFADVLAAHPDVPV FTGPDDVLEALTGFHLHRGALAAMDRPAPRPLADVLAGARRVLIAEDLVDHTNLGAVVRS AVALGWDALLLTPQAADPLYRRAIRVSMGTVFRLPWARLPGPVAASLPALRAAGFAVAAL EVTERAVGLDSARIEPLRTAERLALVLGQEGPGVRPETLAQTDADVVIPMPDGVDSLNVA AAAAVALWELRAR >gi|289558668|gb|ADCD01000007.1| GENE 2 839 - 1651 772 270 aa, chain - ## HITS:1 COG:ML0468 KEGG:ns NR:ns ## COG: ML0468 COG0730 # Protein_GI_number: 15827152 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Mycobacterium leprae # 11 263 11 258 260 175 50.0 6e-44 MDLWQVLLVLLAGFWAGTINSVIGSGTLVTFPTLVAVGFPPVTAQVSNAMGLVASGFSGT YGYRRELAQSRALLPKLTVASLLGGVIGAALLTTLPPAVFGYVAPVLLVVALTVVVLQPR IQRWVRRRAEDQGPTPGADSPVPVGPVTPTLWTLVFLTGIYGGYFVAAQGVMLMAIFGVL LVGGTLVHANAVKTWLSLVVNLTAAAFYLLFAFDRIDWRAVLLIALSSLVGGLVGARIGR RISPTALRVTIVIVGLAGLVVMVMRQVAGG >gi|289558668|gb|ADCD01000007.1| GENE 3 1681 - 2505 219 274 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 34 254 147 360 398 89 33 4e-18 MTTPAPLDDWFLPDEDAVLQMRRVRVRRGTSDILGPLDWTVRAGQRWIVMGPNGAGKSTL LQLAAARLHPTAGDVGVLDEVLGAVDVFELRPRIGLSSAQLAAQVPANETVQDAVVTAAY GITGTWRERYETEDRARALGLVATWGLSRLAHRAFGTLSDGERKRVLIARALMTDPELLL LDEPAAGLDLAGREDLVRQLTALATDEDAPALVLVTHHLEEVPPGFTHALLLRDGGVVAA GPIESTLTEEHLSAAFGTDLKVTRTGGRYTAVAR >gi|289558668|gb|ADCD01000007.1| GENE 4 2592 - 2994 307 134 aa, chain + ## HITS:1 COG:Cgl2471_2 KEGG:ns NR:ns ## COG: Cgl2471_2 COG0560 # Protein_GI_number: 19553721 # Func_class: E Amino acid transport and metabolism # Function: Phosphoserine phosphatase # Organism: Corynebacterium glutamicum # 73 134 5 66 233 79 72.0 2e-15 MSTLRRLVLTADPALLRTDAPPAGVPDDAERLIDDGLLGWRFAADEWAAAPEPGSGWDVL TLPAAVAAAPAPLVVTDVDSTLIRQEVIELLAAHAGREAEVAEVTERAMRGELDFAASLH ARVEALAGLPVGVV Prediction of potential genes in microbial genomes Time: Thu May 26 06:49:28 2011 Seq name: gi|289558642|gb|ADCD01000008.1| Micrococcus luteus SK58 ctg1119142780322, whole genome shotgun sequence Length of sequence - 28706 bp Number of predicted genes - 25, with homology - 22 Number of transcription units - 14, operones - 6 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 42 - 1076 1044 ## COG0160 4-aminobutyrate aminotransferase and related aminotransferases 2 2 Tu 1 . - CDS 1158 - 1454 324 ## Mlut_10350 hypothetical protein 3 3 Op 1 4/0.000 - CDS 1665 - 3050 1291 ## COG1012 NAD-dependent aldehyde dehydrogenases 4 3 Op 2 . - CDS 3047 - 4708 1452 ## COG0531 Amino acid transporters 5 3 Op 3 . - CDS 4735 - 6267 1577 ## COG1231 Monoamine oxidase - Prom 6338 - 6397 2.2 6 4 Tu 1 . + CDS 6431 - 7123 415 ## Mlut_10310 transcriptional regulator, TetR family 7 5 Op 1 . - CDS 7220 - 8299 799 ## Mlut_10300 hypothetical protein 8 5 Op 2 . - CDS 8309 - 8851 180 ## - TRNA 8569 - 8644 91.2 # Ala GGC 0 0 9 6 Tu 1 . + CDS 8814 - 9944 772 ## COG0673 Predicted dehydrogenases and related proteins + Term 10000 - 10035 8.8 - TRNA 10031 - 10106 91.2 # Ala GGC 0 0 - Term 9988 - 10023 8.8 10 7 Op 1 6/0.000 - CDS 10228 - 10893 534 ## COG0406 Fructose-2,6-bisphosphatase 11 7 Op 2 14/0.000 - CDS 10907 - 11332 330 ## COG0799 Uncharacterized homolog of plant Iojap protein 12 7 Op 3 . - CDS 11329 - 11976 610 ## COG1057 Nicotinic acid mononucleotide adenylyltransferase 13 7 Op 4 . - CDS 12051 - 12272 214 ## Mlut_10160 hypothetical protein 14 8 Op 1 . + CDS 12430 - 16851 1630 ## BURPS1710b_3448 hypothetical protein 15 8 Op 2 . + CDS 16613 - 17656 257 ## 16 9 Op 1 . - CDS 16700 - 16957 438 ## PROTEIN SUPPORTED gi|239917523|ref|YP_002957081.1| LSU ribosomal protein L27P 17 9 Op 2 . - CDS 17009 - 17314 493 ## PROTEIN SUPPORTED gi|239917522|ref|YP_002957080.1| LSU ribosomal protein L21P - Term 17476 - 17512 4.1 18 10 Tu 1 . - CDS 17547 - 20996 2349 ## COG1530 Ribonucleases G and E 19 11 Tu 1 . + CDS 21133 - 21924 642 ## COG4243 Predicted membrane protein 20 12 Op 1 . - CDS 22011 - 22433 517 ## COG0105 Nucleoside diphosphate kinase 21 12 Op 2 . - CDS 22509 - 23009 390 ## Mlut_10070 hypothetical protein 22 12 Op 3 . - CDS 23006 - 24559 1319 ## COG0285 Folylpolyglutamate synthase 23 12 Op 4 . - CDS 24559 - 27063 2329 ## COG0060 Isoleucyl-tRNA synthetase 24 13 Tu 1 . + CDS 25378 - 28485 916 ## 25 14 Tu 1 . - CDS 28251 - 28706 210 ## Mlut_10040 hypothetical protein Predicted protein(s) >gi|289558642|gb|ADCD01000008.1| GENE 1 42 - 1076 1044 344 aa, chain + ## HITS:1 COG:ML0485 KEGG:ns NR:ns ## COG: ML0485 COG0160 # Protein_GI_number: 15827162 # Func_class: E Amino acid transport and metabolism # Function: 4-aminobutyrate aminotransferase and related aminotransferases # Organism: Mycobacterium leprae # 1 341 94 443 446 434 64.0 1e-121 MITPYEGYVAVAEQLDRTSPIPGETRTALFNSGAEAVENAVKVARAFTGKQAVAAFDHAY HGRTTLTMALTAKSMPYKHGFGPFAPEIYRVPGSYPLRDGLSGAEAAQRAISALEKQIGA DNLAAVIMEPIQGEGGFIVPAEGFLPAVVEWCKANDVLFIADEVQSGIARTGAWFASETE GIEPDLMATAKGIAGGMPLSGVTGRAEVMDSVHPGGLGGTYGGNPVATAAALAVFEAVEE DGLLEKARRIEQVIREHFEQNTDDRIAEVRGRGAMMAIEFVDPATGEPDATLTATVAAAV RATGVILLTCGTYGNVVRFLPPLTIGEDLLKEGLSEVTKALQSA >gi|289558642|gb|ADCD01000008.1| GENE 2 1158 - 1454 324 98 aa, chain - ## HITS:1 COG:no KEGG:Mlut_10350 NR:ns ## KEGG: Mlut_10350 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 98 6 103 103 158 96.0 5e-38 MTFDVARAGRALAQVGVRTLATAAGLEKEQLRRFEKGLADLRVDERLRLEKALLKYGVGL VPEDEFGGTGVRRIFSAEKSRRIKAMENEGGPAYEDDI >gi|289558642|gb|ADCD01000008.1| GENE 3 1665 - 3050 1291 461 aa, chain - ## HITS:1 COG:DRA0343 KEGG:ns NR:ns ## COG: DRA0343 COG1012 # Protein_GI_number: 15808002 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Deinococcus radiodurans # 11 456 19 462 477 421 51.0 1e-117 MSTPTGYRVQDPSTDQVVETFPALADGEVDQVLAAAETAQRAWAARPIEERATIVQKVAD LFEERKDELAQIIATEMGKRVTEGVEEAEFSSAIFGYFADKGPTLAADRPIETFEGGRAM IRHLPLGVLLGVMPWNFPYYQIARFAAPNLMLGNAIVLKHAEICPRSALAVQQIMDDAGV PAGVYTNVFATHDQIAEFIADPRVAGVSLTGSERAGSVIGALAGQHLKKAVLELGGSDPY IVLDAEDPAEAARTAWATRMYNMGQACNSNKRMIVSADIHDAFVAELVSLAEAMKPGEAA DEDPTVFTPLSSRGAAEGLAEQVERARQQGATVHVGGTVTDEAGARFAPAVITGVTSEMD AYREELFGPVAVVYKVESADEALALANDSQYGLGGAVFSQDEAQAERVARQLEVGMANVN TPAGEGAEIPFGGVKRSGFGRELGPLGMDEFVNKQMYFVQD >gi|289558642|gb|ADCD01000008.1| GENE 4 3047 - 4708 1452 553 aa, chain - ## HITS:1 COG:RSp1046 KEGG:ns NR:ns ## COG: RSp1046 COG0531 # Protein_GI_number: 17549267 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Ralstonia solanacearum # 42 507 9 446 458 140 26.0 7e-33 MSASTPRRRVVDDEGHEHVYPTTSAIEQVNLLNPGAVSNKGLQAGKVGLLGAVVIGVSVV APAYTLTSGLGPTISTVGTHVPAILLLGFIPMLLVALGYRALNTRVPDSGTSFTWATHAF GPYVGWMGGWGLIAASVIVLSNLAAVAVDFTFLLLAQITGSQAIADMAGNLWVNIPLTLV YLALAGWISHRGMETTKHLQYILVAFQILALGAFAVAALTQSSRGAGFDPTPVQLDWFNP FTAGDFSVVAAGVSLSIFLFWGWDVTLTMNEETKDPERTPGRAAAVTVFVIIAVYILSAL AVISWAGIGSEGLGAGNPDNQESIFAVLAGPILGPFAVIMSSAILVSSLASLQSTMVSPA RTLLAMGFYRAVPARFAELSPRFNSPAFATWVCAGFAGLFYVVTRLLSENALWDTITALG LMICFYYGITALACVWYFRREWFASVGNALTTFLFPLIGGLVLLVMFCVTALDSTDPDYG SGSSVFGVGTVFILGMGVLAIGVVLMMWTRLRHPAYFRGETLPQTDSTRPIPIIRPDDDG TAVVRDPNERTHS >gi|289558642|gb|ADCD01000008.1| GENE 5 4735 - 6267 1577 510 aa, chain - ## HITS:1 COG:slr0782 KEGG:ns NR:ns ## COG: slr0782 COG1231 # Protein_GI_number: 16331344 # Func_class: E Amino acid transport and metabolism # Function: Monoamine oxidase # Organism: Synechocystis # 5 497 13 467 471 181 29.0 3e-45 MTTAPATVGRERRTSDVVVIGAGPAGLMAARTAKAQGLTVTVLEARRRVGGRTWNGLVEG ADGKDHFIEIGGQWISPDQTRLISLVEELGLPTFSRFRDGRNVYVDPRGERHVYDGLDFP VAEKTDREMDRLIAKIDELTAEIDAAAPWEHPRAAELDKISFRHWLEQQSDDPEAIDNVS IYIASGMLTKPSHTFSLLQALLMAASAGSFRNLVDEDFILDQRVEGGMQCVSLAMAAELG DDVVLGQPVRTLRWAEPDPSTADEKNGVAADVRNGVAHDGAAGDVVALTDDYEVHARYAV LAIPPNLYSRISFEPPMPREQQIAHQHISMGLVIKVHAVYETPFWREEGLSGTCFGGGRL VQEIYDNTNRGENLAGGAPGEEDPHGTLVGFVSDVYAEQMWALPEEERKAAILGAMAEYL GPRTLEPIAFFLSDMAAEEWTRGAYATSYDLGGLSRWGHLQNRPTGPIHYACSDIAAEGY QHVDGAIRMGEAAALAIAEREATDAGQPTG >gi|289558642|gb|ADCD01000008.1| GENE 6 6431 - 7123 415 230 aa, chain + ## HITS:1 COG:no KEGG:Mlut_10310 NR:ns ## KEGG: Mlut_10310 # Name: not_defined # Def: transcriptional regulator, TetR family # Organism: M.luteus # Pathway: not_defined # 18 219 18 219 230 305 97.0 8e-82 MDETPEPPRTRRRRGRPLSPALSRAAIADAALAVARTEGYEGLTMAAVGRRLGVAPSALY NHISGKHELLVLLQDAVMGEVSLVELEAAIRGEAPVVAALRAWARSYRDVFAAHPPLIPL IATMPIEGAPSTQRVYETVCAVLARTGLAPEQVLARVIALESFIYGSAYDVDAPADIFEV AGAKERLPALGAAAEAFRAGGSTRATGARNPYADAPFEEGLDLLLAGLGD >gi|289558642|gb|ADCD01000008.1| GENE 7 7220 - 8299 799 359 aa, chain - ## HITS:1 COG:no KEGG:Mlut_10300 NR:ns ## KEGG: Mlut_10300 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 359 1 359 359 567 94.0 1e-160 MSVIRTRRPSLRHLPAALAAAGLMTTVALAGPAAAWDDAHGPQAGYFQAVDHENVTAAFF QTYDGYDPGDLTLMITPVAEDGTRLEGGQEVEFTALDVIDGGAVDVLETRRALGAAGEGL VRYDVVADGRMLNMGITLQADADLADDQGAAVHSVDGPQTGHLGDRPLVWDSAMQLAPGV VGAEIVHLVAAPTMEGTYAEVVTEPAHGEVFAFRDSEHSELRAWYIPEEGFVGTDTFTVD FHSDHVAHVQTVTVHVGEEIPAAYDGFLDAEDGVLNGKPLDLTDPDTAAALAAFRGDEAA PAPEDEEEQTAPVEGDADEQHTTPDTVETGQSTGWWLAGLGAAVAGVLVAARRRLGLTD >gi|289558642|gb|ADCD01000008.1| GENE 8 8309 - 8851 180 180 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSAVRIGASVGDMRDLLGWRRARVRLLHARPWGRGGPSTPPSQFARLPRAGYPIQVLQPV RRERSHHPPGGMAQLVARLHGMQKVRGSNPLTSTSQKARSMRTGPSSSYRPRRDHSVLRA PAQHPRRSRPGCGPASITHRRRTALSRQALGGQTRGDPAHRARNTGAAEAGAAGPVRPTQ >gi|289558642|gb|ADCD01000008.1| GENE 9 8814 - 9944 772 376 aa, chain + ## HITS:1 COG:PA5149 KEGG:ns NR:ns ## COG: PA5149 COG0673 # Protein_GI_number: 15600342 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Pseudomonas aeruginosa # 7 356 10 359 360 330 55.0 2e-90 MSPTDAPIRTALIGYGFAGTTFHVPLLRATAGVALTHVVSSRPEAVHADLPDVVVVPDMD ALLARHDVDLVVIAAPNDQHAPLARAALRAGRHVVVDKPFTLSLAEARELRDLAAATGRV LRVFQNRRFDSDFLGIAELVRSGLLGDVVHLESRIDRFRPTVRNRWREAAVPGGGIWFDL GPHLVDQALLLFGVPDLVDADLAALRRGAPVEDWAHCVLHYPGRRVVLQASMLVAGGSPR FAVHGTRGSAVKELPDQQEAQLRAGLFPGAEGWGVDPDPILLHDGEGNTERVPAPIGAQQ RSYAGVRDAILGRSNDDAATPDQALAVMAVLEAAVASAREGRAVEPALTAVERAAFPGVS PAPTAAERHHRGSALR >gi|289558642|gb|ADCD01000008.1| GENE 10 10228 - 10893 534 221 aa, chain - ## HITS:1 COG:slr1124 KEGG:ns NR:ns ## COG: slr1124 COG0406 # Protein_GI_number: 16329243 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Synechocystis # 1 177 131 296 349 87 34.0 2e-17 MRLILLRHGETDWNALDRYQGHTDIELNAEGERQARRAAGGPVGDLLEDAEELVAVCSPL ARARRTAEIVLQARVGAASVAVDPELMELAGGEWEGLELSAIAERWPDEHRLWRAVPALD AGPVGGETLRGGGERALRALRGHVPPHWGDTPRDGGAQTLLAVAHGALIRAAAGLLLRHE GEAFAAMERIGNARAAVLQGAFTPDTGAEGWGDWALEGYGI >gi|289558642|gb|ADCD01000008.1| GENE 11 10907 - 11332 330 141 aa, chain - ## HITS:1 COG:MT2493 KEGG:ns NR:ns ## COG: MT2493 COG0799 # Protein_GI_number: 15841939 # Func_class: S Function unknown # Function: Uncharacterized homolog of plant Iojap protein # Organism: Mycobacterium tuberculosis CDC1551 # 1 123 1 122 126 106 51.0 2e-23 MTVPQTTLDALTTAAAAAADKLGTHIVAFDVAERLGLTDAFLIASGASERQVNAIVDGVE EALLKDEQLKPLRREGRSDGHWVLLDYGHFVVHVQHREDREFYALDRLWKDTPAIDLGLP EESTRPDAAAQDDGASASHAS >gi|289558642|gb|ADCD01000008.1| GENE 12 11329 - 11976 610 215 aa, chain - ## HITS:1 COG:Cgl2301 KEGG:ns NR:ns ## COG: Cgl2301 COG1057 # Protein_GI_number: 19553551 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinic acid mononucleotide adenylyltransferase # Organism: Corynebacterium glutamicum # 18 211 7 204 218 281 70.0 8e-76 MTVASRTPVPEPTAGGVRRRRLGIMGGTFDPIHHGHLVAASEVAAEFELDEVVFVPTGQP WQKSDRQVSPAEDRYLMTVVATASNPRFTVSRVDIDRPGVTYTVDTLRDLRRLHPDAELF FITGADAMGQILTWKDVDELWDLAHFVGVTRPGHDLSDMGLGDDVSLMEIPAMAISSTDC RERVRRGRPVWYLVPDGVVQYIAKHHLYVSEEETS >gi|289558642|gb|ADCD01000008.1| GENE 13 12051 - 12272 214 73 aa, chain - ## HITS:1 COG:no KEGG:Mlut_10160 NR:ns ## KEGG: Mlut_10160 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 73 1 73 73 102 98.0 4e-21 MLNTSLILAAAEGHHVVNELPMDPIWYGVLVFALLMAALAATMSMRSRALRLPEPTTAVQ HHGTGRGSHTSGH >gi|289558642|gb|ADCD01000008.1| GENE 14 12430 - 16851 1630 1473 aa, chain + ## HITS:1 COG:no KEGG:BURPS1710b_3448 NR:ns ## KEGG: BURPS1710b_3448 # Name: not_defined # Def: hypothetical protein # Organism: B.pseudomallei_1710b # Pathway: not_defined # 1 403 21 419 511 68 29.0 3e-09 MHLLGGDAHFGTEAELAAVGEARGRVHDDGRGVHLGDEPLGRGQVVRDDGLGVARGPPAD VLHRLVEGVHDAHGHLHVQVLGAPVLLRGVHGVPGVVAAVGQRGQPGPRGLVHVQQHAGA GEGAQHFAARLLRVPVEQQGLGRIAHGGAVGLRVECDVHRHLLGCGGVHVQMHVALTRLD HGHPGLADHALDQLTAAARDEDVHRATSGHQRGDAGTSEIVDALDDVGVEALIHERLPQH LDQDRVGGLRGRAAAQDHAVARLQGDAGDVHRDVRTGLVHGAHDAQGHPHLAHPHAVGQR TAADHGAHGVRQAGQGLQGEGQRLDARLVQLEPVQHGRRGAGLAAAVAVLAVGRDDRGRV GSQGLSHVAQDGVLADAAGGGQLGHGLTRPLGPLADGLLDLGRRRLGVLAAGLILGCGAL GGLHASSLSSAPDEARGPVRRLGRSPCWSALRRSQAHPVVRVHDDAVVTRAEVLAEVGGR PSEHGGQLRRGVLHEAARPHPAVCVHDLDDVARREVARAAGDARGQQGAAAVDRPGHRAV VDDEPAPDLRREAEPRRACGPAAAGGGEPRAHVLPRERGARVRGRGEQGRDAGGGRDAGR VHLGHHAARAHARGTGHAHVDAGQVVVRGDLRDAPRVRVRGVARVEGVHVREQDQQVRLA EVGGEGREAVVVAEADLARGHGVVLVHDRHHVEREQPRQGAVRVRVLGAPHELLGGQEHL GHLGVVPPEARGVVRHELALADRRRGLLGGGVLGASAQPEVGEAGRDGAGGHEHHLGALL PLGGEDVHEPVDGLHVQAVRGGQRGRADLHDHSARGLHRLPRGHGVGPRVIGAARGGGRI AGDDGAPHGHGSSLSIVGVVPQAGASLGLHLGPGRRTGGPAGILLGALLRTGRAGALVEP KVGATGPGEQLGSRGQRGLPVEDHARDVVADHHGVARPRTGLEQAVLDAGPLEPVRKVAD RLVVLEVRLGHPPLGLLAAHAEQRLEVALLAADRELGPLAAAAMPARHLDRRGRHGLDHP GTGLRHELGHGVLEGVQALAGQRRDVEDPQATALELVADHVRHGGAVGQVGLVQGDEAGP LVQRHDALPSLGEDGLHRVGLELGLDGLEVGDRVAVGLEAAAVEDVHERGAALDVAQELQ AEAAALRGTGDQARDVGHGEAHVAGLHDPEVGHERGERVVRDLGAGRRQGRDEGGLAGRG EAHERDVRHGLDLERQVPALPRQAEQREAGRLALHRGQSRVAEAALTAGGGDVGRTLPHE IGHDVALLILDHRAVRHGEHERLAVLALAVVAHARLAVLGGPVRGVVVVQQRGGLRVHHE GDVAAVAAVAAVGAAQGLELLAMHGDAPVPAVASGEVEDHAVHEGCHGSAPRGWRDRTQT AQGPETPTAGAGPVDAGPAPAGASGGAGVLAGRGSARRPHECQITPRRGRCPRPCGRGAG RRPRSRRTARRGCRPCRGRRCGPGGTWCHAGGR >gi|289558642|gb|ADCD01000008.1| GENE 15 16613 - 17656 257 347 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MPGPPPPGRQGVRVSSPGEGPHADRTSVRSLRGGDDVHDLAAAALAEGHGAGGQREEGVV LAAADVAARVELGATLADDDLAGVDVLAAVALDAEVLRVRIAAVLRGTAGLLMCHCCCLT SRMLGFAGAGDGSGDPGDLDRGQLRAVALALLVAGLVLVLHDDDLLATGVGDDLGGHLHT GGIGASLDLVPVHQHQSGQLDGATGLSGNAVEGNEVSDGNLLLAAASADNRVHHLGLTSL DVSMDQIGFCSPAPRPRLRPGPAVPHRDMRERAGGEHRWSSILAAGRPDQTEACRRVAAA RGGPGAAAPTTVSGRDGPGRRPSLRRRASPGRHPAARRGWTPRPRPR >gi|289558642|gb|ADCD01000008.1| GENE 16 16700 - 16957 438 85 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|239917523|ref|YP_002957081.1| LSU ribosomal protein L27P [Micrococcus luteus NCTC 2665] # 1 85 1 85 85 173 100 1e-42 MAHKKAGSSSKNGRDSNPQYLGVKRYGGEDVNAGEIIVRQRGTKFHPGRNVGRGKDDTLF ALSAGSVAFGQRRGRKVVDIVPAAE >gi|289558642|gb|ADCD01000008.1| GENE 17 17009 - 17314 493 101 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|239917522|ref|YP_002957080.1| LSU ribosomal protein L21P [Micrococcus luteus NCTC 2665] # 1 101 1 101 101 194 99 5e-49 MVYAIVRAGGRQEKVSVGDLVTLDRVPAETGGSVELPALMLVDGDEVKAGADAAGVKVTA EVVSHSRGKKVVIMKYKNKTGYKKRQGHRSELSTVKITGIA >gi|289558642|gb|ADCD01000008.1| GENE 18 17547 - 20996 2349 1149 aa, chain - ## HITS:1 COG:ML1468 KEGG:ns NR:ns ## COG: ML1468 COG1530 # Protein_GI_number: 15827770 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribonucleases G and E # Organism: Mycobacterium leprae # 197 717 229 775 924 535 60.0 1e-151 MTSRSPPPGAPVAHGARGNAAGGGRGHAGRRRVWRRRSAGGAAMAANNEDTTRADERAEE TAAQAVTQTAADTAAGAVQPERTPASDDAADAPDEPSAPTLQFDPTDPFAVPANLIEVLR TETTSRQRSEDEGDPATSGRSRRRRPSREGGHAEESAADASADAEDREDAGESEDRAEGA VVSRRRRRRRRGEVDMELDGGEAGDPEHTVTRVRAPRQAVSTASDTVQSVKGSTRLEAKR QRRRDSRSGGRRRTVITEAEFLARREAVDRKMLVRQRDQRIQIAVLEDGVLAEHFVSHTT QDSMIGNVYLGKVQNVLPSMEAAFVDIGRGRNAVLYAGEVNWDAAQLDGKPRKIENALKS GDTVLVQVTKDPVGHKGARLTSQVSLPGRYLVYVPGGSMTGISRKLPDVERSRLKKILKD HLPQDAGVIVRTAAEGTSEQELQNDINRLRAQWEGIQEKASGTKVLAPELLYAEPDLTIK TVRDVFNEDFSAMLVQGETTWDNIEAYVTYVAPHLLGRLHHWVPEDHDGEDLYATHRVDE QLHKALERKVYLPSGGSLVIDRTEAMTVVDVNTGKFTGSGGNLEETVTKNNLEAAEEIVR QLRLRDIGGIIVIDFIDMVLEANRDLVLRRLVECLGRDRTKHQVAEVTSLGLVQMTRKRM GTGLVEVFSETCEHCAGRGILIQDTPVERGRSGGEQRGEAEGRRRRRRRGDGEGEHAHAA PATTTSAEPTDSEDERQRRERAEAARVALHSIAKASGKVAEDETPAQESAPAEQAADAAE DSAAEAVEAASTGPAEAGQPAGADEEETPRRRRRRGRRRSRGRAEESADTGAEAAGSEDA ARSHDDGPAESAGQTRQTEEEAAEAAAAEAPEHQDPVVQADEAVAAVAEAEAEAEADAES PEDAAEQDDRPRRSRRRRGGRGRSRRGGEAASTEADAEDEGAERATPSRHDAADAESPVA VSAEDASEPVPAEDAPAPRRRRSRRASSDGVVRPAAGADASTERAADRPDAAPVETTEPS PEESTDATEVHEQPAAPAAVEEAVMVEPAATEPTAEPAADVEQTSDADAPAEAQAAPTAP APGSPRRRSRRAVSSDGVHVQVQAAPGGARGGRFTAAAAEASTPAEPQGAAPVMLGVGVK AADLARRGR >gi|289558642|gb|ADCD01000008.1| GENE 19 21133 - 21924 642 263 aa, chain + ## HITS:1 COG:MT3046 KEGG:ns NR:ns ## COG: MT3046 COG4243 # Protein_GI_number: 15842521 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Mycobacterium tuberculosis CDC1551 # 75 214 19 158 210 103 41.0 3e-22 MLDAGAPRRRPDVGRAAGCPAVWPRDGQGRFSHIRPGHAPRIVSMPATPLTDDVRLSPAD DVPAEEARLTWYARPAGTAALLLITSLVALTATIIIIVERALLTADPTHRTSCDLNPWVS CGQVMQSWQAHTFGFPNTYIGVVAFSVLITVAVSLLAGARFARWYWLLMNAGILAGFAFC VWLWYSAVYSIGTLCLYCMIVWAMVIAQLVLVTSRNLQTGTLPAPAGLVRLARELAWPVI VLLYVLVFASILLELGLGVIGID >gi|289558642|gb|ADCD01000008.1| GENE 20 22011 - 22433 517 140 aa, chain - ## HITS:1 COG:BS_ndk KEGG:ns NR:ns ## COG: BS_ndk COG0105 # Protein_GI_number: 16079330 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside diphosphate kinase # Organism: Bacillus subtilis # 5 139 2 132 149 147 55.0 8e-36 MTHHIEETLVLVKPDGVARNLVGEILARIERKGYVIADLKMLTPTRAMLERHYEEHQGKP FFEPLVAFMASGPVVAARVTGDSVIEGFRSLAGKTDPTVAAPGTIRGDLGRDWGEAVQKN LVHGSDSTLSAERELAIWFG >gi|289558642|gb|ADCD01000008.1| GENE 21 22509 - 23009 390 166 aa, chain - ## HITS:1 COG:no KEGG:Mlut_10070 NR:ns ## KEGG: Mlut_10070 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 166 1 166 166 282 95.0 3e-75 MTPDQPETGGTTEQGRFGDESWRPARETRAQRQWRPGTRRRRRSVRALFTSTILMLEAVL IFFLGLMLFGMHRDEPGAWWFVAGYSALAVVAVLTCALVRRPVGIAIGWAIQAVLLASGF WEYSMFVVGALFALTWAYAVIKGGAMDVENAQRDRLEAAWEAEHGR >gi|289558642|gb|ADCD01000008.1| GENE 22 23006 - 24559 1319 517 aa, chain - ## HITS:1 COG:Cgl2324 KEGG:ns NR:ns ## COG: Cgl2324 COG0285 # Protein_GI_number: 19553574 # Func_class: H Coenzyme transport and metabolism # Function: Folylpolyglutamate synthase # Organism: Corynebacterium glutamicum # 11 460 55 504 507 323 45.0 6e-88 MRGDVPGTVEEVYRDLLARAPENKMQPRLEPMRRVLALLGDPQHAVPVIHLTGTNGKTST ARMVEAVLRAYGLRTGRYTSPHLQRVTERISIDGAPVADETFVRVWGEILPIVQTVDAEL EAAGEVPLTYFEAVTTLGFAVFADEPVEVVVLEVGLGGVTDATNVADAVVSVVTPISLDH TDLLGETEAEIAEEKAGIIKPGGALVSAAQERDAAQVLLEAARAADVPFRFEGVEFGVLE RSLAVGGQQVSVRGLAAEYRDLFLPLLGEHQAQNLAVAVAALEMFLGGGERPLDEELLRE GLSQVTSPGRLEVLRTAPTLIVDAAHNPDGVRATARAVQEAFGFTRLALVVGILQEKDAP GMLAALYRAFGDDVEDLAVTQSSSARAIPAGELARMAVDAGWPEDDVYATESVPDALEWA VGRAEALETSADELASGTGGGVLVLGSITLAAEVRALVGEPRHAGPVTVAARGLDPADLL DAVGLADADEDDLDPEILELLEDRDDAGARRRPEEDR >gi|289558642|gb|ADCD01000008.1| GENE 23 24559 - 27063 2329 834 aa, chain - ## HITS:1 COG:MT1587 KEGG:ns NR:ns ## COG: MT1587 COG0060 # Protein_GI_number: 15841003 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Isoleucyl-tRNA synthetase # Organism: Mycobacterium tuberculosis CDC1551 # 1 807 275 1023 1041 742 52.0 0 MGAHAKELGYADADAARAAVTETIPGARLGGLAYAPLFTDVFDAHRGETFTVNGRDLGVE GAHRILVDDYVSTEDGTGVVHQAPAYGEDDQRVCEANGIPVLLSVDSGARFLPLFAREDV GRGDLREIAGVQVFEANRTIIRALRSLGRLAREASYEHSYPHCWRCRTPLIYRAVTSWYV KVTQVKERMLELNEEITWIPGNVKHGQFGTWVANARDWSISRNRYWGSPIPVWESDHPDY PLQEVYGSLAEIEEAFGRLPRNAEGEVDLHRPWVDDLTRPHPDPEAAAAGAVMRRVEDVL DVWFDSGSMPYAQVHYPFERADWFPTHNPADFIVEYIGQTRGWFYTMHILATALFDRPAF SNVISHGIVLGSDGQKMSKSLRNYPDVTEVLDRDGADAMRWFLMASPILRGGNLIVTEEG IREGVRQVLLPAWNAYHFFTLYANTAHDGGARPDGYRAQERHTAEDPLDQYILAATGRML REVKTGLDAYEVSDATDALRGFMDTLTNWYIRRSRERFFDEDTVAFDVLYTVLEAFTRAA APLMPLIAEEIWRGLTGGRSVHLTDYPDADLFPHGPEADSLVARMDAVRRISSAGSALRK GAGRRVRLPLPRLSVVVPDAAGLEGTYARIVADELNLKDVELTELTEEAIARYGIGTELK LNFRELGKAFGRQVPLVKQAVDAGAYEETAEGLAVTLADGETVTLAPTLYELRTVSTGAP EGTAVGVLPGTAGFLVLDTEVSAELAAEGTARDVVRAVQAARKEAGLDVSDRVRTRIEGP TAVVAALEAHRGLVAEETLTVDLELVDSGAADPRKDPADDAMKTVAVAVAKADA >gi|289558642|gb|ADCD01000008.1| GENE 24 25378 - 28485 916 1035 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MDRAAARETAPDLLGDQRHQRRGGPGEGLQDGVEDVEGDGVLVEESLPGPADVPVGQRVH EAAQRVRGVRDLVGVQAGLDLPQHAARGGQDVLVQGVLGGVPLLRAVPVGAGAAVVRGVR VQGEEVVGVPRRQQHLADALADALLRDDQVAAAQDGAGHEEPAHGVRAVAVQDLRDVRVV AQRLGHLLPVRAEHDAVRDHVGERRPVEQGGRQDVHGVEPAARLADVLHDEVRRVVRGEP VRALERVVHLGVGHGAGVEPDVQHVLDPAHDRTGRGGLGVRVGAGEVVHPRAVQVHLALG VARQTAEGLLDLRQGAVDLLERVVRVVGLPHRDGRAPVAVAGDGPVARVGDPRAELPVLH VAGDPGDLLVQLEHALLDLGDLDVPGRHRAVDQRRAAPPAVRVGVLVGGLPREPAQRAQG ADDRAVGLEDLHAGDLAQVAAPDVLAGEQRQETGTGVHGEQHGDAVGLAHALIVLTVGRR LVDHAGAVLGGDVVVHEDAVGALDAEVTAVDGEGLPAVGVEHVREQRRVGQAAEAGAGDR LGDRGAGGVGVGVAELLGVGAHESTARRKRSPSAVAPSGPAGTRVLGSGGRRRGPRWSAA SRAWWSGQDVDAGQVRGERRVGAAVGHEGGVRREAGDRERDGDRGVLAHLVDVVVHAQLV VGQRGLVVPAVGQDAEAAVGQALAVQLGEGPDHGLHEVWGEGLVVVLEVDPAGLAGHVVL PLVRVLQDRGAAGVVERVDAHGLDLGLVRHAQLLHRLELGGQAVGVPAEAALHAAALLRL VAGHEVLDVPGEQVPVVRQAVGEGRAVVEDELVLRAVRVPGGTLVDRGLEGAVLVPVRQD AALDLREARGGGGAAVRGGGGEGVHGGPLRAGRRFRARTPEGPTLRPAADAVPPCLPASG GPRGAGRLMTAVTGLPVRFYWGPAARSSGGSPVMAGSTPVPASVVDDAPARGRGAGAGQR AVRTAADASPSSSTWTASRPEAQRRSSPISPVTVTGARSATAPRVTVTGARPGPWRTTGA VDLRRNSGAMRRSER >gi|289558642|gb|ADCD01000008.1| GENE 25 28251 - 28706 210 151 aa, chain - ## HITS:1 COG:no KEGG:Mlut_10040 NR:ns ## KEGG: Mlut_10040 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 151 61 211 211 250 96.0 1e-65 VDRLTAETKRRDYAEVVREWAAGPSALNPMRAADRHVNAAEHFIHLEDVRRGESATGGSS PAPRSFSPDEEDALYRSLRRMAPLFLRKSTAPVVLQGPGRAPVTVTRGAVALRAPVTVTG EIGELLLWASGRDAVHVELDGDASAAVRTAL Prediction of potential genes in microbial genomes Time: Thu May 26 06:51:16 2011 Seq name: gi|289558640|gb|ADCD01000009.1| Micrococcus luteus SK58 ctg1119142780168, whole genome shotgun sequence Length of sequence - 367 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 49 - 367 278 ## COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases) Predicted protein(s) >gi|289558640|gb|ADCD01000009.1| GENE 1 49 - 367 278 106 aa, chain + ## HITS:1 COG:ECs0274 KEGG:ns NR:ns ## COG: ECs0274 COG1974 # Protein_GI_number: 15829528 # Func_class: K Transcription; T Signal transduction mechanisms # Function: SOS-response transcriptional repressors (RecA-mediated autopeptidases) # Organism: Escherichia coli O157:H7 # 18 106 4 92 237 170 97.0 7e-43 MLDIYTLCGELDLTYEHKKKPLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQS GVGALFNGINALNAYNAALLTKILKVSVEEFSPSIAREIYEMYEAV Prediction of potential genes in microbial genomes Time: Thu May 26 06:51:35 2011 Seq name: gi|289558591|gb|ADCD01000010.1| Micrococcus luteus SK58 ctg1119142780341, whole genome shotgun sequence Length of sequence - 49673 bp Number of predicted genes - 48, with homology - 47 Number of transcription units - 23, operones - 14 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 2/0.200 + CDS 2 - 406 445 ## COG0576 Molecular chaperone GrpE (heat shock protein) 2 1 Op 2 3/0.000 + CDS 474 - 1466 841 ## COG2214 DnaJ-class molecular chaperone 3 1 Op 3 . + CDS 1559 - 2014 443 ## COG0789 Predicted transcriptional regulators 4 1 Op 4 . + CDS 2074 - 3060 619 ## Mlut_18770 alpha/beta hydrolase of unknown function (DUF1023) 5 2 Op 1 . - CDS 3083 - 4078 777 ## COG0220 Predicted S-adenosylmethionine-dependent methyltransferase 6 2 Op 2 . - CDS 4149 - 5483 516 ## Mlut_18750 hypothetical protein 7 2 Op 3 . - CDS 5489 - 6235 264 ## PROTEIN SUPPORTED gi|154175107|ref|YP_001408238.1| ribosomal protein L22 8 3 Tu 1 . + CDS 6436 - 7029 667 ## Mlut_18730 hypothetical protein - Term 7000 - 7043 3.8 9 4 Op 1 34/0.000 - CDS 7119 - 7922 570 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 10 4 Op 2 31/0.000 - CDS 7924 - 8718 757 ## COG0765 ABC-type amino acid transport system, permease component 11 4 Op 3 . - CDS 8751 - 9572 653 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 12 5 Tu 1 . + CDS 10105 - 10719 522 ## Mlut_18680 hypothetical protein 13 6 Tu 1 . - CDS 10724 - 11905 924 ## COG1295 Predicted membrane protein 14 7 Tu 1 . + CDS 12057 - 14651 1565 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 + Term 14682 - 14713 -0.9 15 8 Op 1 . - CDS 14779 - 16197 1223 ## COG2234 Predicted aminopeptidases 16 8 Op 2 . - CDS 16272 - 16493 90 ## 17 9 Op 1 . + CDS 16492 - 16698 141 ## Mlut_18640 hypothetical protein 18 9 Op 2 . + CDS 16695 - 17639 620 ## COG0846 NAD-dependent protein deacetylases, SIR2 family 19 10 Tu 1 . + CDS 17823 - 18812 374 ## Mlut_18620 hypothetical protein 20 11 Op 1 13/0.000 - CDS 18879 - 20036 759 ## PROTEIN SUPPORTED gi|126667548|ref|ZP_01738518.1| Ribosomal protein S7 21 11 Op 2 . - CDS 20033 - 21646 1366 ## COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase 22 11 Op 3 . - CDS 21643 - 22050 373 ## Mlut_18590 hypothetical protein 23 11 Op 4 . - CDS 22125 - 23867 1171 ## COG1136 ABC-type antimicrobial peptide transport system, ATPase component 24 12 Op 1 . - CDS 24131 - 25267 570 ## RMDY18_12540 membrane-fusion protein 25 12 Op 2 . - CDS 25264 - 26127 571 ## RMDY18_00900 undecaprenyl pyrophosphate synthase 26 12 Op 3 . - CDS 26196 - 26555 320 ## gi|289704663|ref|ZP_06501091.1| conserved domain protein 27 13 Op 1 . - CDS 26795 - 27196 152 ## Mlut_18580 hypothetical protein 28 13 Op 2 . - CDS 27193 - 28266 869 ## COG4448 L-asparaginase II 29 13 Op 3 36/0.000 - CDS 28348 - 29145 776 ## COG1136 ABC-type antimicrobial peptide transport system, ATPase component 30 13 Op 4 . - CDS 29226 - 30452 1060 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 31 14 Op 1 19/0.000 + CDS 30590 - 31942 1003 ## COG4585 Signal transduction histidine kinase 32 14 Op 2 . + CDS 31939 - 32568 526 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - Term 32424 - 32472 0.5 33 15 Tu 1 . - CDS 32611 - 32880 221 ## Mlut_18520 hypothetical protein 34 16 Op 1 . + CDS 33051 - 34232 1084 ## COG0151 Phosphoribosylamine-glycine ligase 35 16 Op 2 . + CDS 34244 - 35176 765 ## COG0152 Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase 36 17 Tu 1 . + CDS 35355 - 36404 527 ## Mlut_18620 hypothetical protein 37 18 Op 1 35/0.000 - CDS 36444 - 38309 203 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 38 18 Op 2 . - CDS 38306 - 40033 242 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 39 19 Op 1 2/0.200 - CDS 40186 - 41154 719 ## COG1408 Predicted phosphohydrolases 40 19 Op 2 . - CDS 41160 - 43343 2034 ## COG0744 Membrane carboxypeptidase (penicillin-binding protein) 41 20 Op 1 . + CDS 43412 - 43579 152 ## Mlut_18310 hypothetical protein 42 20 Op 2 . + CDS 43582 - 44076 246 ## COG0251 Putative translation initiation inhibitor, yjgF family 43 20 Op 3 . + CDS 44066 - 44968 337 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 44 21 Tu 1 . - CDS 45004 - 45594 169 ## PROTEIN SUPPORTED gi|163788659|ref|ZP_02183104.1| 50S ribosomal protein L20 45 22 Tu 1 . + CDS 45160 - 47244 1046 ## COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain 46 23 Op 1 . + CDS 47364 - 49013 1584 ## COG0733 Na+-dependent transporters of the SNF family 47 23 Op 2 . + CDS 49017 - 49202 157 ## Mlut_18250 hypothetical protein 48 23 Op 3 . + CDS 49174 - 49656 338 ## COG1725 Predicted transcriptional regulators Predicted protein(s) >gi|289558591|gb|ADCD01000010.1| GENE 1 2 - 406 445 134 aa, chain + ## HITS:1 COG:ML2495 KEGG:ns NR:ns ## COG: ML2495 COG0576 # Protein_GI_number: 15828349 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone GrpE (heat shock protein) # Organism: Mycobacterium leprae # 1 129 62 188 229 80 42.0 6e-16 TDLRRLQAEYVNYKRRVDRDRDLARDAGVLKAVTALLPVLDDIDAARAAGDLTDGPFAAI ATKLDTALAGLGLERHDQEALAGVEFDPAVHEAVMRQPHAEVPADHVVQVFRNGYLRHGR VLRAAQVMVSAGDE >gi|289558591|gb|ADCD01000010.1| GENE 2 474 - 1466 841 330 aa, chain + ## HITS:1 COG:slr0093 KEGG:ns NR:ns ## COG: slr0093 COG2214 # Protein_GI_number: 16331768 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: DnaJ-class molecular chaperone # Organism: Synechocystis # 1 328 1 328 332 178 39.0 2e-44 MASQDWMDKDFYATLGVSKDASDADVKKAYRKLARTHHPDQNPGDEAAEKKFKEISEAYA VLSDPQERQEYDAIRAMGGGARFSAPGGADGGGFEDVFGGMFGGGGGPRTTQSGPDLSDL FSGMFGGAAGQTGGFGPGGFGDAGYARPRPTKGADRTATTTISFRGSIQGTTVSLRAPDG ETIEVKIPKGIRDGQKVRARGKGAPGAAGRGDLLVTVHVREHEFFHRDGDDLRITVPVTF PEAALGATIEVPTLERPVKVKVPAGSQSGRVLRLKGRGVERGNRTGDLLVELRVTVPTEL NDDARAAVEALQSALAGDDPRRELARKAAW >gi|289558591|gb|ADCD01000010.1| GENE 3 1559 - 2014 443 151 aa, chain + ## HITS:1 COG:MT0368 KEGG:ns NR:ns ## COG: MT0368 COG0789 # Protein_GI_number: 15839739 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Mycobacterium tuberculosis CDC1551 # 1 86 21 107 126 71 52.0 7e-13 MAGMHPQTLRQYDRLGLVVPARQGGRHRRYSLADVERLQTVQALSGEGISLEGIRRVIAL QREVEQLQDTVVELSAQVDRLHHASRLARVFTVGSGGDVSARYADRMAARRQAAARTEAD AAGQASPGVLRTLPSGVAVPRRVLTWQPEQD >gi|289558591|gb|ADCD01000010.1| GENE 4 2074 - 3060 619 328 aa, chain + ## HITS:1 COG:no KEGG:Mlut_18770 NR:ns ## KEGG: Mlut_18770 # Name: not_defined # Def: alpha/beta hydrolase of unknown function (DUF1023) # Organism: M.luteus # Pathway: not_defined # 1 328 1 328 328 426 97.0 1e-118 MARRDGLGRRARSALDGIVHALKPEGMDPQLPARHLLDYVLDGPDGPRAVVAAGDPATAT HLTWLVSGMGIRPQTAMWGTAREAAHLAAAQRAAGAPRPVVIAWLGYPAPSPWRVVLDGP GRRGGAMLAADVRAWWEFLRHGPGEDDDAAPALRARGTAVHGAVEAHSYGSLVAAHALRL LADRGLQPDDAEAPWPAERPVEALVVSGAVGLPAALAARAAHLGLRSGRVFRALAPGDLL ARVGRAVGRRRDWTDAAVLPVAPRPGLAGAAVRGHHTARWSPTAPGDAPRGYRDAGSVTL AATARVTAGLPLPPVPDGADPAGPVAPA >gi|289558591|gb|ADCD01000010.1| GENE 5 3083 - 4078 777 331 aa, chain - ## HITS:1 COG:RSc0703 KEGG:ns NR:ns ## COG: RSc0703 COG0220 # Protein_GI_number: 17545422 # Func_class: R General function prediction only # Function: Predicted S-adenosylmethionine-dependent methyltransferase # Organism: Ralstonia solanacearum # 41 253 30 234 251 143 43.0 4e-34 MTEHLPRPRPDAPGPDAVPPPAERVHAHDHNRDKDPALVRREPVSFVRRGARLNAGRQAV WDRQAERVLVDVPRGRGATSVDAQARLDWAGVFGREAPLLVDIGSGLGESTAQAAADRPD WNVLAVEVYVPGLAALMTRVEQQGLENVRAVEANAPELLDALLTPGSVSEVWVFFPDPWH KKRHHKRRLVSPAFADRVARVLAPGGVLRLATDWSGYAVQMREVLEAHPEFENLFPGRAA GEDSPLTRVRREGRETEVGAQPLPAGWERAAEEERPLRAGLGEARAGAAAADPVDHEGGW APRFEGRPITSFEAKSQRAGRLVFDLAYRRR >gi|289558591|gb|ADCD01000010.1| GENE 6 4149 - 5483 516 444 aa, chain - ## HITS:1 COG:no KEGG:Mlut_18750 NR:ns ## KEGG: Mlut_18750 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 444 1 435 435 369 92.0 1e-100 MRPVLPSPRRGRATLGLAAVALVALSACARTEPQPEPAPDTTAASALPSMDMAPFTVEVP SHDLERVPEASVAVLEGEDPDHHGAWLQVPGAPAWSEAMAGAVRAQIDQYRRDTDPSADP RLEIQPQLAVVAEDIAAARLLATERRGTDSVSTSHVIWYSAREDRVLETADLFTPDGWDA FRAEVRQRMANDPDVIGSRLDSAVDAPEQVENRRVWDAVVFLPDGSLLLEADQASMAPAA AGVLTVRIPRDTAAPWLSDLGHVAADAASAPADLRLPDRSTPTPEEQQPEPAPEPEPETS SWTEEATGAPVPPPSAPADTAAPTPSATTPVPSSTAPSSSTPAPTRSATPSSPTSPPTSS SPTSPPTSSSPSGTGSGSPTPSTPDPTPTSATPTPTSPSPSGPSTSAPATDPAPDPTESA PEPTATTASAPASPTSGDRSSGTP >gi|289558591|gb|ADCD01000010.1| GENE 7 5489 - 6235 264 248 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|154175107|ref|YP_001408238.1| ribosomal protein L22 [Campylobacter curvus 525.92] # 23 219 6 198 199 106 34 3e-22 MLPLVTPLSVAAAAPTDYGWLGNIVVDIMEAVGPIGVGLAVFAENIFPPIPSEVILPLAG FTAAGGAFSPHAALVWATVGSIVGALALYGIGAWLGRRRMYRIADRMPLVDMEDVAKTER WFIRYGYWTVFLGRMVPVFRSLISIPAGIERMNLAKFTLFTALGSLIWNAIFVYGGYALG ERFHVISEYADVFSNIVLVLILAFLATWVVLRLRRDARRRNDPDWRPPTADEMAARVEAI LESSGHRK >gi|289558591|gb|ADCD01000010.1| GENE 8 6436 - 7029 667 197 aa, chain + ## HITS:1 COG:no KEGG:Mlut_18730 NR:ns ## KEGG: Mlut_18730 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 197 1 197 197 307 97.0 1e-82 MSIVQIPLRLASGAFILNSGLNKRGISAEQAQGLRDMGARGLPALANLSPEQFKKFLVGT EIGVGSALLAPFVPGWLAGSALTAFSGGLFSMYLNTPEMTEADGVRPSQEGTGVAKDIFL VGSGLAITADSVANRPGKRRKAAKKRAARIEGARDAKVQAIRDAQDEKVAAIHAAREEQV AALREARDELKKLRKKA >gi|289558591|gb|ADCD01000010.1| GENE 9 7119 - 7922 570 267 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 22 259 2 242 245 224 47 1e-57 MAQQNPITGSFGAVAAADAAGVHVAGLNKSFGANHVLRGIDLDVAPGEVVCLIGPSGSGK STLLRCVNLLEKPDSGVVTVGEFTVTDEDVDLDVLRRHVGMVFQQFNLFPHLSVLENCTV AQLKVLKRGKAEAADIARRQLARVGLAELEDRYPDQLSGGQQQRVAIARALAMDPQLMLF DEPTSALDPETVGDVLAIMRQLARDGMTMLVVTHEMGFAREVADRVVFMDGGVVVEAGPA AAVISDPQQPRTQDFLRRVLHPTEIDL >gi|289558591|gb|ADCD01000010.1| GENE 10 7924 - 8718 757 264 aa, chain - ## HITS:1 COG:AGpA9_1 KEGG:ns NR:ns ## COG: AGpA9_1 COG0765 # Protein_GI_number: 16119238 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 37 249 7 220 226 141 43.0 1e-33 MKPGRARRRRRLSLIIQAAVFVLALVVLAVLIDWGTLAENVLNFPAVAPMFPNVILVGLG NTLFYTVTSFVVGLLGGIVLALMRLSSFGPYRWLATAYVEFFRGVPALLVFLAFGYGVPF AFGVSWPIPVVVMAALGMVSAAYIAETLRAGLQAVPRGQMEAARSLGMPTWRAMVTIVIP QAFRIVLPPLTNEVILLTKDSSLVYVLGLAAHEYELTKFGRDGISALDAGMTPILVAGLF YLVITVPLSLLARRFEARSTKKGH >gi|289558591|gb|ADCD01000010.1| GENE 11 8751 - 9572 653 273 aa, chain - ## HITS:1 COG:AF0231 KEGG:ns NR:ns ## COG: AF0231 COG0834 # Protein_GI_number: 11497847 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Archaeoglobus fulgidus # 48 267 34 264 264 123 35.0 3e-28 MTRIHPRLLGAVGLTASAALLTGCAVLGGDAGSAGIVSDDDLSTSYGLVQPGVLTVCSDI PYPPFEFEEKGELTGYDIQLVEAVAEKLGLGVNVIDSSFEAIESGASLTGCDVNASSISI TEARQRVMAFTLPYLDDDLVLVAKKGSGITDVESAKGRRIGVQAATTGDEYAQQNGLSPV QFEDGGMQIQAIQAGTVDAALGNQSVLLYSLKDDDRFEVVESLPTGEQLGMAVGPQKAQL GSAVNRALQELRNDGTVAELQERWFGQAQEDYR >gi|289558591|gb|ADCD01000010.1| GENE 12 10105 - 10719 522 204 aa, chain + ## HITS:1 COG:no KEGG:Mlut_18680 NR:ns ## KEGG: Mlut_18680 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 204 1 204 204 314 94.0 1e-84 MGAGSDLTDEQEERVEALEDVLLTPQTAPDGVFMDMETQVGGGGEPISTSLSLTGVTPTG ACADLIEQINTQQAPGLGGALAQYEVDPAAVTGLAGSQAGAFGMVAVTEDGTDLLEPFGE LADTCGTFGDPNGVEAAFTTVPGVPDAVHISLGNSGMDTPVFTMTVGGVTDGDELVYLGM VGLDEEIAAETLRAQVEAFEKRER >gi|289558591|gb|ADCD01000010.1| GENE 13 10724 - 11905 924 393 aa, chain - ## HITS:1 COG:SMb21363 KEGG:ns NR:ns ## COG: SMb21363 COG1295 # Protein_GI_number: 16264688 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Sinorhizobium meliloti # 17 287 66 332 364 95 28.0 1e-19 MAGSTAAPRRLRTYTRPRVSLLYVLRRTLHRLFELQVWDVAAAMTFFGALSLLPTVIALL SVVSLLGVEEETVDAAAHLAAEIWPSLTPDVVREWILTLGSAGPGTGAVVLGAVGTVVSA SGAVGAFHRAMHRIHDTREGRPFLHFRLVVFVETLALMLGAVLITILVVVGGDLSQRLGQ AVGLPEETVQTWNVVKWPVILVVIALIVTLAYRLGPNVRQPRYRPLSLGAVAVVVLLFGA TVALGWITDRFGQFAVVGRINSAIGVLALAWVACIVLLAGAAFDAEVLRARQLAVGIDAS VEIQLATRHTAVLEDSERYEARNRRLARLVADAVRAGESLTIEATPLLSEEGRLLAVESG QRGPEDVSSGSPFHADPVSDDGARLEPTPRPDD >gi|289558591|gb|ADCD01000010.1| GENE 14 12057 - 14651 1565 864 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 1 855 2 806 815 607 40 1e-173 MDAKFTTKSQEALSAAAMNASTAGNPQIEPAHLLKALMDQRESVAVAVLKAAGADPDAVS TAASSAIRRLPSTQGSTVAQAQLSRAALQVVQNARTQAEQRSDQFVSTEHLLLGVAADPG DAGEALRSNGASLEALAAALTQVRGDSRVTTQDPENTFQSLEKYGTDLTEVARSGKLDPV IGRDAEIRRVVQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQRMVAGDVPESLRGKTLISL DLGAMVAGAKYRGEFEERLKAVLEEIKAAEGQVVTFIDEIHTVVGAGASEGAMDAGNMLK PMLARGELRLIGATTLDEYRENIEKDPALERRFQQVYVGEPSVDDTIAILRGLKERYEAH HKVAIADSALVAAATLSHRYITGRQLPDKAIDLVDEAASRLRMEIDSAPEEIDVLRRQVD RLTMEELALEGETDPASVERLEALRAEKADREEELTALTARWDAEKATLNEAGDLRAKVD ELRSLAEKAQRDGDLAEASRLLYGEIPALEKQLEEADRAAREADRSTTEPMVSEEVTADD IAEVVSAWTGIPAGRMLTAESEKLLTMEEHLGERLIGQRDAVVAVADAVRRSRAGIADPN RPTGSFLFLGPTGVGKTELAKALAEFLFDDERAMVRIDMSEYAEKHSVSRLVGAPPGYVG YDEGGQLTEAVRRRPYSVVLLDEVEKAHPEVFDILLQVLDDGRLTDGQGRTVDFRNVILI LTSNLGSQFLVDPTLDEAAKRESVMSVVRAAFKPEFLNRLDEIVQFDALTVDELTRIVDL QVESLQARLTDRRLTLEVSDAAKAWLAETGFDPAYGARPLRRLVQREIGDRLARGILAGE IADGDTVVVDRVEGENGLTVTRKG >gi|289558591|gb|ADCD01000010.1| GENE 15 14779 - 16197 1223 472 aa, chain - ## HITS:1 COG:Rv0418 KEGG:ns NR:ns ## COG: Rv0418 COG2234 # Protein_GI_number: 15607559 # Func_class: R General function prediction only # Function: Predicted aminopeptidases # Organism: Mycobacterium tuberculosis H37Rv # 65 465 48 479 500 212 37.0 1e-54 MRRTPTLLAAATLAATLTAAPVSLAAPAAPAAPAKAPAATTQTADRGLGPGLNRAGGNPN SPEKLVRSISSDHLRQDIEAFAAIADEHGNRAAGTPGFQASLDYAVGELEEAGYDVELQE FEITYTETLRDRLQQTGPVQRDLEHTVFTSSPSAQVTDAPLTAPAGAATGCADADWAGAD LTGSVALVSRGDCTFAQKSQVAAASGAEAVIIYNNAEGALNGTLGAEPGDVVGTVGVTRE LGADLLAQTRGGGATVTLDLEQLVEQRPTWNVLAETRTGSDDDVVMLGAHLDGVPEGPGI HDNASGVAATLEVARQAAKANKAESKVRFALWGAEEIGLLGSHHYVDTLTAAEREDIILY TNLDMVAPLDHQNTLGVLTADWSIGAESLLGAQLDRDGHAHQPEGSNGRSDYAPFVDAGI ASTGLLSIRDDNYHTPQDDIDNVSITTLTHTARAVANLIGTLQQDADALGTR >gi|289558591|gb|ADCD01000010.1| GENE 16 16272 - 16493 90 73 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSVTPFASLAASDLWRTGARRGTHWSIWFVRTRIHDRLDGPRTTTAGPVRRDVRRRRVRR GRPQHVRHPAGRA >gi|289558591|gb|ADCD01000010.1| GENE 17 16492 - 16698 141 68 aa, chain + ## HITS:1 COG:no KEGG:Mlut_18640 NR:ns ## KEGG: Mlut_18640 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 68 1 68 68 85 98.0 4e-16 MGRGRQKAKATKQAREMKYFSPGTDLSALERELTGGRTPSPEPDQEPEYEDPYADLYAED EDDDARAR >gi|289558591|gb|ADCD01000010.1| GENE 18 16695 - 17639 620 314 aa, chain + ## HITS:1 COG:Cgl0079 KEGG:ns NR:ns ## COG: Cgl0079 COG0846 # Protein_GI_number: 19551329 # Func_class: K Transcription # Function: NAD-dependent protein deacetylases, SIR2 family # Organism: Corynebacterium glutamicum # 123 307 8 186 195 199 54.0 5e-51 MTPARHPALDGHQAALRSIARVVDETAPLQDPETASRGLLRLMEESRPLVITGAGVSTDS GIPDYRGPNGSLHRHRPMTYQEFRDDPAARHRYWARSFVGWRRMDQARPNEAHRILARWA AEGRIAGILTQNVDGLHAEAGRAAGMPEDRLIELHGNLARVACLNCGATESRRDLDLRLE AANPGYLERVAIDPDAVNPDGDVSLDQHWVEEFTMVGCRVCGSVKLKPDVVYFGESVPAA RRAAAEAMADDGGAVLAVGTSLAVMSGYRFVLRAERAGHETGLINLGPTRADAKARWRWR APVADALAWLDARL >gi|289558591|gb|ADCD01000010.1| GENE 19 17823 - 18812 374 329 aa, chain + ## HITS:1 COG:no KEGG:Mlut_18620 NR:ns ## KEGG: Mlut_18620 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 329 1 329 329 537 92.0 1e-151 MATSSQPLSDIVEAGRPFTRGDLRAAGVSERLVRGGDVRRVTHGVHRLRSDHLGPWAELG YAEAPAPFAPEETAAIVAASGGVASHLTALLLHRVPLPPFLAEDGTVHVSRPHPRGASVR PEITSHARLVPAADVTALHGIRLTSLERSWADLAALLRPGMLEPVVAAGDALVHRPWSPE GRRSPRTTTAALRSALLRAGRFKGVRTARAALELVRVGADSPQETALRLALVHAGLPEPE LQLVLHPGRARSPDADLGWRRWRLVVHYDGGHHLDPAQLTVDAWRDEGWARAGWTQIWVT VDDSRDDFRRVLAEVQAHRARLGGRIFAS >gi|289558591|gb|ADCD01000010.1| GENE 20 18879 - 20036 759 385 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|126667548|ref|ZP_01738518.1| Ribosomal protein S7 [Marinobacter sp. ELB17] # 13 368 8 350 354 296 43 1e-79 MTPNQTPSSAAPITYASAGVDVEAGDRAVELMKDAVKATHSPEVLGSIGGFAGMWDASAL LQYRKPLLTTSTDGVGTKVAIAQAMDKHDTIGQDLVGMVVDDIVVVGAQPLFMTDYIACG KVVPERIADIVRGVAEGCRLADTALVGGETAEHPGLLAVDEYDVAGAATGVVEADMVLGA ERVQSGDVVIGMASSGIHSNGYSLVRRVVNAAGWSLDREVTELGCTLGEELLVPTRIYSR ACLDLVQRLNGHDGGSDLPVRAFSHVTGGGLAANLARVLPRGLMATVERDTWSLPPVFRL VGELGRVPQSDLERTLNLGVGMVAVVDPEVAATSISVLVDAGIDAWEMGTIGALTDGAAA AGLDFVQGAKGVDGGAVLMRGQYAA >gi|289558591|gb|ADCD01000010.1| GENE 21 20033 - 21646 1366 537 aa, chain - ## HITS:1 COG:ML2206 KEGG:ns NR:ns ## COG: ML2206 COG0034 # Protein_GI_number: 15828184 # Func_class: F Nucleotide transport and metabolism # Function: Glutamine phosphoribosylpyrophosphate amidotransferase # Organism: Mycobacterium leprae # 24 498 54 532 556 604 64.0 1e-172 MIAPRTRRGDGRLTAALDPQDQGPQDECGVFGVWAPGEEVAKLAYYGLYALQHRGQESAG IAVSDGGRIAVYKDIGLVSQVFDEATLTALSGHIAVGHCRYSTTGVNKWANAQPTLGATA DDGTVALAHNGNLVNSAELLRMVHAAEGRHTHGEMKQGNTTDTALVTALLHGAPGDRLEE TALELLPKIRGAYCFVFMDERTLYAARDPQGVRPLVLGRLERGWVVASEQSALATVGASF IREVEPGEMIAIDDEGIRSTRFAESKPAGCVFEYVYLARPDATIAGRSVYESRVEMGRRL ALEQPVEADVVIPVPESGTPAAVGYADASGLPFRQGFVKNAYVGRTFIQPSQTLRQLGIR LKLNVQSTVVAGKRVVVVDDSIVRGNTQRAVVRMLKEAGAAEVHVKISSPPVKWPCFYGI DFATRAELIANGAAVDQIAASIGADSLAYISEEGMIEATGQPRERLCTACFTGDYPIPLA DEGERGKGLLEPVAVSPASTVVLDEDGATTTVTATGCEPGPDADDEKLLTETDRTPL >gi|289558591|gb|ADCD01000010.1| GENE 22 21643 - 22050 373 135 aa, chain - ## HITS:1 COG:no KEGG:Mlut_18590 NR:ns ## KEGG: Mlut_18590 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 135 1 135 135 147 99.0 8e-35 MTSAPEPTPDQRAYTVRRAPRLTAVLAVALALGLLIALVITTAVHASPTPPADPYSGIPL SFSETFGFAALLSMLGTSVLGLLVWLLLDRRSRSTARTVVLERTDDPAVADVRLDRVDAG APPARTTPTERTPEQ >gi|289558591|gb|ADCD01000010.1| GENE 23 22125 - 23867 1171 580 aa, chain - ## HITS:1 COG:FN0827 KEGG:ns NR:ns ## COG: FN0827 COG1136 # Protein_GI_number: 19704162 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, ATPase component # Organism: Fusobacterium nucleatum # 3 145 75 217 220 125 43.0 3e-28 MGEAERDRLRSRVFGFVFQSSHVLGDEAVSTNAALGLRIQRVPWDERDVRAGEALDLLGL GHRLGTRAKLLSGGERQRLAIARAVATRPRVILADEPTGNLDSANSRIVIEHLRELHARG TTVLLITHDPAIAAQADRHVRIEDGVLTESRSAPTPSAAAGPGSRGVAAKEARPPSPPAS GHRASALLDDAVDALSSLSSRFLRTVLLMAAFAVGIGGLVASVGLSQTATAQVSARLTAA ALDEVVVNLPADDGLLDPDDDRLTRWSTDLAALPHVQAAGHLAEISPADARITRSAPDEP EPAAALTLASASASYAAAADLRFPAGSEAVLESAAERAAWVTPDAARALHLPAPDSGVLS PGYRIWVEGQSVPVLGLVRVSERTPQLGAAVFVTRPVMAGARQPSLTLTVRTETGFPYPV SQAAPLVIDPANPGRVTTRTVADLRNLRAGVSDDLGAFVGVLSAVLLALAVISASTAMYL SVQSRTAEIALRRAIGSGRGLIARLFLLEGALIGLAGGAVGAAAGTAAVLAVAHARGWAA VLPTTAAPLSLALGLTAGVVSALYPAWVASRQRPADALRG >gi|289558591|gb|ADCD01000010.1| GENE 24 24131 - 25267 570 378 aa, chain - ## HITS:1 COG:no KEGG:RMDY18_12540 NR:ns ## KEGG: RMDY18_12540 # Name: not_defined # Def: membrane-fusion protein # Organism: R.mucilaginosa # Pathway: not_defined # 7 378 12 375 375 144 30.0 4e-33 MSPAGPHRAGRRLARPGRLAIVGLLVLALLAASFVAGRFFQPPRTADPAAVSQPIDVWAA VEQRVVDTSASFAGTVAAGKTRSVAVTAEGPAVVLRQTVKPGQTVRPGDVAGEVSGVTYV FLPEPLALYRDLTEGDTGEDVSSLQRALEKVGHTAGKDGVLDARTARALRELFQEAGAPL PQDTPVSVGWRQFIPLGSGGAQVVSAAGYGATLTDDQPLLRLQTSPPSVQFTADVTQAAA LRKGQPVRVAAGSAALEGTVAAIGDFQAAQGEGRAGHTITVALGEGAEVPPVGQSVSVST APETTAEPGLAVPLTAVRGMGSDAYVILRDDAATATGSGAGASARPDERRVPVTVGVTGG GYAAVTGELEAGDRVKVS >gi|289558591|gb|ADCD01000010.1| GENE 25 25264 - 26127 571 287 aa, chain - ## HITS:1 COG:no KEGG:RMDY18_00900 NR:ns ## KEGG: RMDY18_00900 # Name: not_defined # Def: undecaprenyl pyrophosphate synthase # Organism: R.mucilaginosa # Pathway: not_defined # 4 287 86 360 360 98 29.0 3e-19 MKKLMALAPMIAATLLVTGCSSADPVPDTAAKAQLDRARGQVVLPLEEYQATVDELNVTQ RASQSVLRECLNGRGHAGLAPAADSTGPGLDRPYGLWLPEQAAQEGFIPAVDQSAPPPGE WSDESDPSFNAAYDACRGEVGAQMDAVSIPEAALSGGLPGELATKAYNSASATDAWKTAR EEWTTCLRDHGLTPRDDESAWTSAEAQQILEASEEGSADPARKKEEIRIASIEADCNEKT QLTQRLGDIEASYQAPLIKQNEAALQDVKAETAKHVDAARAYLASHQ >gi|289558591|gb|ADCD01000010.1| GENE 26 26196 - 26555 320 119 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|289704663|ref|ZP_06501091.1| ## NR: gi|289704663|ref|ZP_06501091.1| conserved domain protein [Micrococcus luteus SK58] # 3 119 1 117 117 211 100.0 1e-53 MCMMRTALKLASTALAGLALAGSLAAPAQAVSAYPHMNYSGNPLGGTDRSNVGTMNDQIS SIRTYGSYVKFWEDNGYSGRNFITRMDWNDLRDTATNLHWGETWNDRISSWDTSPYRTY >gi|289558591|gb|ADCD01000010.1| GENE 27 26795 - 27196 152 133 aa, chain - ## HITS:1 COG:no KEGG:Mlut_18580 NR:ns ## KEGG: Mlut_18580 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 133 1 133 133 194 93.0 8e-49 MTTGSVPRRRVPVVEGHAALLAWAHAHAEDPAAAAALPRSTRATAVRFALEELATRVPGN SVEVRVPPFGVAQCLPGPRHTRGTPPNVVEMDAVTWLSLATGLTSWADATAAGGVRASGV RADLAAHLPLVRP >gi|289558591|gb|ADCD01000010.1| GENE 28 27193 - 28266 869 357 aa, chain - ## HITS:1 COG:SMc00035 KEGG:ns NR:ns ## COG: SMc00035 COG4448 # Protein_GI_number: 15964708 # Func_class: E Amino acid transport and metabolism # Function: L-asparaginase II # Organism: Sinorhizobium meliloti # 21 311 6 303 336 161 38.0 2e-39 MTHATVAPAGETFALSDAVELVETVRNGFVESRTAGAAVVTGPDGRVLAGLGPADTLIYP RSTLKPFQAVASLRHGAALEGEALSIACGSHRGTLRHQALAERMLADAGLDASALRCPPA WPADTSEVVAQVRRDGEAAAATPLAFNCSGKHAGFLAACAASGHDVATYLDPAHPLQREV DAVIAEYCGEPVAHTGVDGCGAPAAVVSLAGLARGIGRVAAAPGRADADPHAAAVATAML EHPWAVHGETSSNTVVMRELGLLAKAGADGVLVMAAPDGTAVAVKALDGGTRAGDLVALA LLARFAPDHVDRATLPGVLAAVVPPVLGRGEPVGEIRLAAPVRDLVGDVLPAFEAGA >gi|289558591|gb|ADCD01000010.1| GENE 29 28348 - 29145 776 265 aa, chain - ## HITS:1 COG:L132038 KEGG:ns NR:ns ## COG: L132038 COG1136 # Protein_GI_number: 15674238 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, ATPase component # Organism: Lactococcus lactis # 39 263 3 219 223 160 41.0 2e-39 MTALTAPQADLDTLRTPAAAAAHRVAAERPAAAADATPALSVRDLVLEYPDGERGVLRAL DEVSLDLLPGTFTAMVGPSGSGKSSLLAVAAGLVTPTSGSVSVAGREMAGLSRKERTALR GQEIGMIFQQPNLIPSLTAAEQLELTVHLDRDATRADRKAARARALELLERVDLADQARK RPHQLSGGQRQRVNIVRALMASPTLLLVDEPTSALDRERSAAVVDLLGTLTREEQVATLM VTHDHEFLSATDRTLTMVDGRLSAE >gi|289558591|gb|ADCD01000010.1| GENE 30 29226 - 30452 1060 408 aa, chain - ## HITS:1 COG:lin2726 KEGG:ns NR:ns ## COG: lin2726 COG0577 # Protein_GI_number: 16801787 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Listeria innocua # 26 406 1 359 362 118 25.0 2e-26 MCRPLPARDRGGNLRTDLFQERTRPVFLALRDLRFATGRFALMGSVVALISLLLVMLSGL TAGLGGQNTAAIDRLGEQGVQRLVFGGAAGQEPTASFTQSEFTVAQRDAWAATDGVASVE PLGVSQGRAVGLEHPVDTDPQRRADVSGEPTTGVATTAFIGLTPGGSDAPAGVEPGQIVL SQDVADSLHAQAGDAVAVSGFVYTVADVVSTEYYSHSPVTWLALEDWNAISHTADDAVLG TAGLVRFDAGADVDAVADAGDDAAGTVAETVKGSYAALPSYRSENGSLMTMQGFLYGISA LVVIAFLSIWTVQRTRDIAVLKALGGSNGWVLKDSLAQAAFVLVGGVAVGTGLAAAIGAF AGRAVPFELSWATTAVPAAGVLVLGMLAAVVAVFRVTRIDPLVALGGN >gi|289558591|gb|ADCD01000010.1| GENE 31 30590 - 31942 1003 450 aa, chain + ## HITS:1 COG:Cgl2871 KEGG:ns NR:ns ## COG: Cgl2871 COG4585 # Protein_GI_number: 19554121 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Corynebacterium glutamicum # 18 450 34 431 444 126 28.0 1e-28 MPPAATETGTTAVLAGLRVALHVTFAALLTVGLARALADRSPEASGPFPATTLVLLTAAL AGVYLAGTVLERRRWARGDDVGRGPAVAWLALVLLLWGLLVAHHGDFAWVAFPLFFVVLH VVGRVTRQAWVRHVVGPVMVVAMAVVVVAGMASGAGGVRVPAVIGPLVGAAVAVVLSEAY RALHAESERQRAVAEQLRAAQAELARTEHRAGVSAERERLAREIHDTLTQGLASIVLVSR AAQDALDAADPALARQRMETVRATAVENLAESRRFVRDLRGTGAPSLVEALERAVAGFAD RQAAAGTPVAADVEVVGEPVAVAEAVETAVLRAVQASLANVGAHAGARRARVTLGYLGDE LTVDVADDGAGFDPAVVVARARAGASGADPGAGTGVGLASVRERLAAVGGEATVESAPGE GTVVALRVPLAAAGAGRGADPEETESEETA >gi|289558591|gb|ADCD01000010.1| GENE 32 31939 - 32568 526 209 aa, chain + ## HITS:1 COG:Cgl1963 KEGG:ns NR:ns ## COG: Cgl1963 COG2197 # Protein_GI_number: 19553213 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Corynebacterium glutamicum # 3 208 2 210 210 155 46.0 6e-38 MSVRVMLVDDHPVVRAGVRAVVEAHPDLTVVAEAADGAEAIGVLEAGEPTVDVVLMDLQM GAGMDGVTATRAVRERWPGVQVLILTTFDTEADILAAVNAGAAGYLLKDAPSEEIASAVR QAAAGRKALAPQVAATLMGRMSGGSEVLSEREIELLELIARGATNKMAAKELFISEATVK THLVHIFQKLGVDNRTRAVDEARRRRIIR >gi|289558591|gb|ADCD01000010.1| GENE 33 32611 - 32880 221 89 aa, chain - ## HITS:1 COG:no KEGG:Mlut_18520 NR:ns ## KEGG: Mlut_18520 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 89 1 89 89 127 94.0 1e-28 MTMPPLHHGQPGDDGDPRDPRHRPGAGLGPGLRTVWTFVGVMFTCALIVFWTLRGFGVQR GDLSLPAALGVLALAAVAAAVITRYVRRR >gi|289558591|gb|ADCD01000010.1| GENE 34 33051 - 34232 1084 393 aa, chain + ## HITS:1 COG:Cgl2548 KEGG:ns NR:ns ## COG: Cgl2548 COG0151 # Protein_GI_number: 19553798 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylamine-glycine ligase # Organism: Corynebacterium glutamicum # 1 386 37 421 421 341 54.0 1e-93 MADLATLHAVEATDPAAVVELARELGADLVVVGPEAPLAAGVSDALREAGFAVFGPSQAA AQLEASKAFAKQVMAAAGVPTAGSRVCTTAAEAAAALDEFGAPHVVKDDGLAAGKGVVVT PDRAEALAHAEACFAAGGTVVIEDFLDGPEVSLFVICDGEDAVALTPAQDFKRIHDGDAG PNTGGMGAYTPLPWLPEGFTDEVMDRVARPVLAEMARRGTPFTGVLFCGLAVTAKGVEII EFNVRFGDPETQAVLARLETPLGGLLADAAAGRLGADRRLEWSDDVAVDVVMASAGYPAS SSTGDVISGLADAAALEGVHVIHAGTAASGEDVVTAGGRVLAVVGRGADLAQARERAYAG VERIRFDGAQWRTDIGLKAERGEITVPGTEGAK >gi|289558591|gb|ADCD01000010.1| GENE 35 34244 - 35176 765 310 aa, chain + ## HITS:1 COG:Cgl2543 KEGG:ns NR:ns ## COG: Cgl2543 COG0152 # Protein_GI_number: 19553793 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase # Organism: Corynebacterium glutamicum # 10 308 4 289 297 301 52.0 1e-81 MGFTGAEALELPGWRHVYSGKVRDLYEPADAEPGRSATLLVVASDRISAYDHVLEPPIPD KGAILTRLTLWWFEKLAEGYNGAHAEPVEHHVVSTDVPAAVAGRAMVVKRLDMFPVECIA RGYLTGSGLAEYRASGTVAGLPLPAGLVDGSRLDPPIFTPSAKAEVGEHDENITFEQMVE RVGTEAAERLRFLTLDLYARAEAIAREAGIILADTKVEFGVDPATGQVVLGDEVLTPDSS RFWDAEDYEPGRTQASFDKQFVRDWLTGPDSGWDKASGEAPPALPADVVAKTRDRYVEAY ERLTGRPFDA >gi|289558591|gb|ADCD01000010.1| GENE 36 35355 - 36404 527 349 aa, chain + ## HITS:1 COG:no KEGG:Mlut_18620 NR:ns ## KEGG: Mlut_18620 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 14 316 15 318 329 233 52.0 1e-59 MPRRPAPLPPALAGRVFTRREALDRLSSDRLRSLDLRRVTHGAHRAVVDVPGSWAALGYP RPVAALPPEEAAVVVALTRGVASHLTAARLHGLVLPWWAEEDTRVHVSRPHRTGRTGRAG VACHGRTVPAEDRVEVHGVPATSLERTWVDLCSLLRPDQVADAVVAGDALVNRPWVDGTR LPPRTTPARLSAALERAGRFKGVRVARAALALIRVGADSPPETRLRLALLDAGLPEPRLQ ARLVSPAGERTDADMVVERSRVALHYDGGHHRTPEQQRRDARRDRLWQEAGHLSITVMGA DLAEDFRTVVAAVVRHDRAVRATSTTSGPAPAAGLSNVKSGEWALSNVG >gi|289558591|gb|ADCD01000010.1| GENE 37 36444 - 38309 203 621 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 396 602 16 226 245 82 31 3e-15 MSAADVSRVRGVGAEEDLDYTRAERRHIRRRSFRLLGELARPVRGTLLLTVLFVLVSNAA RAAGPLIIAWAIDAELPRVVEAVRAGESVWPILVPVGGAYVAAALVSGGLLGAYTWLTAR ASQAMLLSLRLRVFRHTQRLSLGFHERYTSGRVISRQTSDLEALRELLDQGVSSLVSGLM FMSFTAASILLLDPPSFLVLLGAAVPVAIVTRWYQVRSEEAYRRSRVSSARSIVHFVETM TGIRAVQAFRRERDNDARYRDLATAYRDDMVATLNLFGILQPVLVATGNLTVAALLVTGG LRVLDGDLEVGVLVALLLAGRRVFQPMEMVAMFYSSLQSATAALEKVSGLLEEEPTVVEA AEPTPLPGADAPGAGVASGRVEFRDAVFSYGPGRVVLPEFDLVIPAGQTVAVVGQTGAGK STLAKLIARFYDVSAGSLALDGVELRELSQADLRRNVVMVTQEAFLFSGSIAENIALGRP DATEAEIQAAARAVGAHDFILGLPEGYATDVAKRGGRLSAGQRQLVSFARAFLADPAVLI LDEATSSLDLPSERLVQAGLERLLGNRTALIIAHRLSTVETADRVLVMHDGRIVEDGSPA ELVAADGRFAALHRAWEDSLA >gi|289558591|gb|ADCD01000010.1| GENE 38 38306 - 40033 242 575 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 337 558 33 251 329 97 31 1e-19 MAAGLVALAIPQVIHLLVDTVFTETVLARPSSPDSRADVWRAAGLLTVLGLAEAAFIGLR RYFILPPAAGVENRARIALFERLQRLPVAFHDAWPSGQLLSRAQGDLSLLRRWIAFGSVM LVVDVVTITVGLVLLFLLSWQLALLYLAAAVPIMWASFGFRNDFRAASRLSQDQAGDLAT SVEESVHGIRVLKAFGRGAHALDGFRGRARTLQGTEVHKASVLARFIALIVALPETVLGL GLALGLWLVATGELTVGALAAYFATAAVLAGPVESVGQLMGMTLSARTAIDRHVDVLATP VDIASPTGEAAVVPPATGALAFRGVRFRWPDADPGRGERDLLDGVDLELVPGETMALVGA TGAGKSTLLQLVPRLLDVTAGSVCVDGVDVRRMPLEELRRRVSVAFEDATLFSATIRQNV LLGAPADVLADGLHSPAADALLDLALETAQAGFVADLADGVETEIGEEGLSLSGGQRQRI ALARAIAARPDVLVLDDPLSALDVRTEEAVTARLREVLDGTTTLIVAHRPSTVALADRVA VLADGRIEDVGTHPELLARSAVYRHIISSRPEEQA >gi|289558591|gb|ADCD01000010.1| GENE 39 40186 - 41154 719 322 aa, chain - ## HITS:1 COG:ML2309 KEGG:ns NR:ns ## COG: ML2309 COG1408 # Protein_GI_number: 15828241 # Func_class: R General function prediction only # Function: Predicted phosphohydrolases # Organism: Mycobacterium leprae # 23 319 11 289 330 240 48.0 3e-63 MRPAASPARRMLRAAAPAAAGLAATAGLGLAWGLAEAEARTVRTHRLAVLPAGSAPLRIL HLSDIHLLPRHRAKQAWLHGLDALEPDLVVNTGDNVSAAASVPLVLAALGPLLARPGVFV PGSNDYYAPKAANPLRYFAGPSRMDEDRPRLPSDVLFGAFRAAGWADLTNRGAALAVPTR AGTTLEVLAAGTDDPHLGLDAWAGFPGAAPDEGAGRPGGDGRFRLGVTHAPYRRVLDAMT ADGADLLLAGHTHGGQVCVPFLGALVTNCDLPRRQASGVSTWTADGRTVPLEVSAGLGTA PSAPVRFACRPEAVVLDLVPRG >gi|289558591|gb|ADCD01000010.1| GENE 40 41160 - 43343 2034 727 aa, chain - ## HITS:1 COG:Cgl0279 KEGG:ns NR:ns ## COG: Cgl0279 COG0744 # Protein_GI_number: 19551529 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase (penicillin-binding protein) # Organism: Corynebacterium glutamicum # 13 648 2 636 795 229 31.0 1e-59 MASRTTRFPAPSSALGRLLAFVGLSAVAGLLVAALLLPVAGLAGVAAASGREMLDELPDE LPAEPVSVPSRILSEDGEEIAVFYEENRTPVPLDEISEHMQHAIVAIEDERFYDHDGVDA RGLIRATVNNATSDSTQGASTLTQQFVNNMLVNVQQIRGDSRLTLSGSKNIADKVKEIKL AVAVEKQMSKDEILEGYLNIVLFSGRAYGVEAASQYVFGKSAADLESWEAATLAGMVQSP TRFNPARNPEEATERRNLVLNAMKDNGYLSQEEYDHAVAQPMEVVMESRPSGCLYAKFGT YFCDYVERQILADPTFGPDVQSRQALLDRGGLTIRTTIDSTLQKETEKNLRASVPNNESL GAGHALTSVEAGTGNIRTMAQNTEYAIQDELGHTSLNFNVDKQWGGGQGFQAGSTLKPFV ALTWLRNGNRLVDSVDASRNVYPTGTRFAASCRPGGYTTVGGTWQFKNVIPGMLRQVRVD EGLFWSVNTPTVATAYQLDLCDITSLTTQLGITRALDSSPLQPDDPSFLLGKDSVAPLSL AGAYAAIAANGLYCEPRAILEVTDTAGNQYDVADPQCDQVIDPDHVRELMPVLRHIGGFN IAEEGAGYEFGGKTGTNDNVSSTWFVGFTSKLATAVWTGRYNNLKSMTGETVNGEVRNPF YSTSINGPSWLEYNQMAKEKFPPGELPEWDGPQSEDPGEAGEHPDGRQFHIDDLDRGGPL PEAVPGF >gi|289558591|gb|ADCD01000010.1| GENE 41 43412 - 43579 152 55 aa, chain + ## HITS:1 COG:no KEGG:Mlut_18310 NR:ns ## KEGG: Mlut_18310 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 55 1 55 55 100 100.0 2e-20 MTQQTQWEYATIPLLIHATKQILDQWGEDGWELVTVIPGPEGNNPVAYLKRPKAA >gi|289558591|gb|ADCD01000010.1| GENE 42 43582 - 44076 246 164 aa, chain + ## HITS:1 COG:MT3779 KEGG:ns NR:ns ## COG: MT3779 COG0251 # Protein_GI_number: 15843295 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation initiation inhibitor, yjgF family # Organism: Mycobacterium tuberculosis CDC1551 # 14 163 2 150 151 154 63.0 8e-38 MTEQSSAPTWGDGAVAARLAELGIDRPAVAAPVGSYVPALRDGDLVLTSGQLPFVAGALP ATGKVGAEVTPERAQELARTCAVNAVAAVHELLGDLDRVAQVVKVVGFVASDPAFAGQPG VVNGASDVLAEIFGEVGRHARSAVGVAVLPMDAPVEVEITVRVR >gi|289558591|gb|ADCD01000010.1| GENE 43 44066 - 44968 337 300 aa, chain + ## HITS:1 COG:Rv3040c KEGG:ns NR:ns ## COG: Rv3040c COG0494 # Protein_GI_number: 15610177 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Mycobacterium tuberculosis H37Rv # 40 221 20 215 288 65 33.0 1e-10 MSADPAGLLLPVPEQEEDLTRQWLDRRFSQVRPARPGSAVVLVRDGDDGPEVFLRHRAGR TPLGRVGLPGGALLESDADSCPWYGPEPSQWAHTFGTTDRRRARQHVVAAVRQLHDEAGV LLAGRSDTDVVSTARIETWGGGHSSLEEGSESLPHLLAARGLGVRADLLRPVMRWHSAPH VHRRFDTAVFATTTPPVQSTPTSEEPGPELQAWVPACRALAGPLRLPGPAGAEGMAPFDQ VATPLTQVIVRRVAAHRTAAAFLLSATPCARRGPVPEYHLVTEAGDDGIPRMRVERAPRD >gi|289558591|gb|ADCD01000010.1| GENE 44 45004 - 45594 169 196 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163788659|ref|ZP_02183104.1| 50S ribosomal protein L20 [Flavobacteriales bacterium ALC-1] # 10 185 40 218 223 69 25 3e-11 MELSRGASAFHEGDQGDQLYVIMSGKIKLGRTASDGRENLVAVLGPGEIFGEMALFNPAP RNATATAVSATRLAGLRHENLRRAIASSPDVSVQLLQALAQRLSKTNESLADLVFSDVPG RVAKALLDLADRFGRPAADGLLVAHDLTQEELAQLVGASRETVNKALAEFVQRGWIRLEN RAVVILDLQRLRQRSR >gi|289558591|gb|ADCD01000010.1| GENE 45 45160 - 47244 1046 694 aa, chain + ## HITS:1 COG:MT3772 KEGG:ns NR:ns ## COG: MT3772 COG0265 # Protein_GI_number: 15843288 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain # Organism: Mycobacterium tuberculosis CDC1551 # 472 691 177 396 397 98 35.0 4e-20 MRHQQAVRGRAAEAVREVQERLGHAARHVREHQVRQGLVGLGQALGQGLEQLDRHIRRRG DGAAQVLVAQTGQARGGHRGGGGVARGGVEQGHLAEDLAGAEHGHEVLAAVRSGAAELDL AGHDHVQLIALVALVERGRAAGELHLGQLRGEDGEHLVVQVGEQRSLPQNLEIHVCVSSL WPVPHTAAEEPPGSLASIVPHTPVRADTLDPPPGARAVPVRGRCRRIRRRSPMPLGLTWL DVLLIIGLAMLLVQGHRRGLWVVLGNLVGLVGGAAIAFYALPEVAKVVTAPQWRWAALIA TLVLLVAAGQYVGAAIGEAIRLRVNLPALRLVDRLLGALAAGLAGALVLWLVAFSIAASG STAVTREVTRSRVITALDTVMPDSLLAWAARSRSAVADLDVLPELELPAPVPETDGGVRA APAPAVTPGLPSAASSPSDTATSAPPATSAAATLEEPDDAAAASSSTSAAPSATTAAPAS SASTAAPSTPAASSASAAVVRLTGTAAQCNQVQSGSGVAVAPDRVLTNAHVVLGVDAPTV TDRARGVHAARIVHLDTAHDLAVLAVDDADLPVMPVGAELTGGASASVLGYPDGGPFAST PAAVQAVGEVPLGDVLTGAASMVDVYTLAADIRHGYSGGPVVDAAGNLAGLVFARAPGSD AVGYALTADTIAPVVAAAPQMTATVPSGDCVPGG >gi|289558591|gb|ADCD01000010.1| GENE 46 47364 - 49013 1584 549 aa, chain + ## HITS:1 COG:NMA0470 KEGG:ns NR:ns ## COG: NMA0470 COG0733 # Protein_GI_number: 15793471 # Func_class: R General function prediction only # Function: Na+-dependent transporters of the SNF family # Organism: Neisseria meningitidis Z2491 # 16 520 7 509 511 526 58.0 1e-149 MSSTVSAPAPAPAPQRTREEFTGRWAFILAAIGSAVGLGNIWRFPYVAYENGGGAFVIPY LIALLTAGIPLLFFDYAIGHRFRGSAPLAFRRLSRWTETVGWWQVLICVVIGIYYAAIIG WAIMYTWFSVDQRWGDDPETFLMGDYLQVADDPSPSFDFVSGVFWPMLAVWVITLLIMGF GVRRGVALASMVGIPLLVVMFLILVGIALTLPGAAQGLDALFTPNWAALADPGVWIAAYG QIFFSLSVGFGIMITYASYLNRRTNLTGSGLVVGFSNSGFEILAGIGVFSALGFMAQASG VSVSEVAGSGIGLAFIAFPTLISQAPLGALIGVLFFGSLVVAGFTSLISILEVVISAVKD KLGWGRWTATIVVIGLSGVVSLALFSTTTGLQMLDTMDAFANNFGIVGAALLSVLLVTGA LGSARRITAHLNAVSSFKVGRGYVLLIGVLMPIVLAYIWLSWIMKVIAEGYEGYPGDFLG VFGWGIALGSVALAVLLSLIPWSRKSNLYAEDLDSEIHGDLIPHNAVPQGTVPTGALPVM PAATTRKEL >gi|289558591|gb|ADCD01000010.1| GENE 47 49017 - 49202 157 61 aa, chain + ## HITS:1 COG:no KEGG:Mlut_18250 NR:ns ## KEGG: Mlut_18250 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 61 1 61 61 99 95.0 3e-20 MSTAAIVMMSLAILLVWGGLAVSAVHLLRHPDDSSGDLAIGGELAPAVWEREDGRLDAQH R >gi|289558591|gb|ADCD01000010.1| GENE 48 49174 - 49656 338 160 aa, chain + ## HITS:1 COG:BS_yhcF KEGG:ns NR:ns ## COG: BS_yhcF COG1725 # Protein_GI_number: 16077971 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus subtilis # 51 153 10 115 121 65 33.0 3e-11 MAVSTRSTGETMRAPGPSAATPSAAPVAGGAAGVVSASLPVVAVDGSLPTPPYRQIVDAV LAGVASGSLARGDRLPPVRALAAELGVAPGTVARAYKELEAHGTIRTRGRAGTFVAASAD ARADAAHQAVRRCLDTLLERLGYTPDEAVELVRRDAAARA Prediction of potential genes in microbial genomes Time: Thu May 26 06:52:51 2011 Seq name: gi|289558587|gb|ADCD01000011.1| Micrococcus luteus SK58 ctg1119142776977, whole genome shotgun sequence Length of sequence - 1444 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 201 - 908 493 ## Mlut_09770 hypothetical protein 2 2 Tu 1 . - CDS 946 - 1419 405 ## COG2346 Truncated hemoglobins Predicted protein(s) >gi|289558587|gb|ADCD01000011.1| GENE 1 201 - 908 493 235 aa, chain + ## HITS:1 COG:no KEGG:Mlut_09770 NR:ns ## KEGG: Mlut_09770 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 235 1 236 236 381 98.0 1e-104 MTEHSAAPVLRFVDDRAVRDLEQLATRARRVADTGMRLHVVPEAGRSRTPMLAQWVSVLQ PAGLGDGVPVVLGLRTVPLATADGVADLDAVVALGSVTERTARMRGQDPVDLAFAVPPGR EHVTWTALTPPRGGWTPAAEVADEELAEVATRGADAVRDALPENPGEALVRRVRAQMWGP LLGGEALQFPAGMAFGAHALGFLRPGGSARLSTAGPWTRLDTPGGFVLGRPAMAV >gi|289558587|gb|ADCD01000011.1| GENE 2 946 - 1419 405 157 aa, chain - ## HITS:1 COG:MT2546 KEGG:ns NR:ns ## COG: MT2546 COG2346 # Protein_GI_number: 15841995 # Func_class: R General function prediction only # Function: Truncated hemoglobins # Organism: Mycobacterium tuberculosis CDC1551 # 37 156 10 132 134 149 65.0 2e-36 MQEGTPAPVEQVRARDAAAGPAGATPGTPAAPGQAASFYDAVGGRPTFDRLTAEFYARVR EDEILAPMYPQDDFEGAQRRLLMFLEQYWGGPRTYSEERGHPRLRMRHAPYRIDPAARDA WLRHMRAAVDTLELSPLHEAELWDYLERAAHSLRNSA Prediction of potential genes in microbial genomes Time: Thu May 26 06:52:57 2011 Seq name: gi|289558582|gb|ADCD01000012.1| Micrococcus luteus SK58 ctg1119142780314, whole genome shotgun sequence Length of sequence - 6126 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 3, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 1/0.000 - CDS 47 - 1309 1167 ## COG0004 Ammonia permease - Term 1441 - 1487 19.6 2 2 Op 1 . - CDS 1505 - 2713 664 ## PROTEIN SUPPORTED gi|163762490|ref|ZP_02169555.1| ribosomal protein L28 3 2 Op 2 . - CDS 2761 - 4566 927 ## Sros_3705 hypothetical protein 4 3 Tu 1 . + CDS 4797 - 6101 1121 ## COG0477 Permeases of the major facilitator superfamily Predicted protein(s) >gi|289558582|gb|ADCD01000012.1| GENE 1 47 - 1309 1167 420 aa, chain - ## HITS:1 COG:Cgl2012 KEGG:ns NR:ns ## COG: Cgl2012 COG0004 # Protein_GI_number: 19553262 # Func_class: P Inorganic ion transport and metabolism # Function: Ammonia permease # Organism: Corynebacterium glutamicum # 7 407 25 447 454 309 51.0 5e-84 MEESNVLDAGTVWMVTSAAMVLLMTPGLAIFYGGMTRAKSSLNMIMMSFVSMGLVGVVWV LWVHGMTGGDGWAGVVGNPAGDLGLTGTMAEGGLVAAAYGATFAIIAVALISGAVADRFK FVTWCVFVPVWTTVVYAPLAYMVWGGGLLSADGAIGARLGEALDFAGGLVVHISAGVAAL VLALMLGKRHGFGVDPGHRPHNVPFTMLGAALLWFGWFGFNGGAAGGVDELGLIWVDTLA AGAAGMLGWVFVEWLRRGRPTSIGTASGIVSGLVAITPACAFVSPLGAVVIGLVSGAASA LAVNLKYRLGFDDSLDVVGVHLTSGILGTVLIGFFALPDEGRAGLFYGGDAGLLVAQTVA VLVAVVFTAVVTTAIALVLRGTMGLRVSKEDEERGVDLTLHDESAYDVGFGGVPVPAEAR >gi|289558582|gb|ADCD01000012.1| GENE 2 1505 - 2713 664 402 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762490|ref|ZP_02169555.1| ribosomal protein L28 [Bacillus selenitireducens MLS10] # 103 402 21 322 336 260 46 2e-69 MEIVLIVSVVAALLLGGVLVGLLDRRPAPPKGSYQGVRDADDPRPSPRHAAPSGSTAVLE RPEVDEAPPAVAEPEPAVVEEAETAPAKPEYERPEAAGSRLARLRARLLKSNNVFGKGLL ALLSQDRIDDDVWDEIEETLLMADLGTEPTLELVDRLKARVTVEGTRDPEQVRTLLREEL VAMVDPSMDRRLAATRRGERPAVTMVVGVNGVGKTTTVGKLARVLVAEDRTVVLGAADTF RAAAAEQLATWGARVGVETVRSEKEGADPASVAFEAVEHGIAEGVDVVLVDTAGRLQNKA NLMDELGKIKRVIEKQAEVDEVLLVLDATTGQNGLTQAKVFAEVVDVTGIVLTKLDGTAK GGIVIAIQRQLGVPVKLIGLGEGPDDLAPFTAEGFVDALLAD >gi|289558582|gb|ADCD01000012.1| GENE 3 2761 - 4566 927 601 aa, chain - ## HITS:1 COG:no KEGG:Sros_3705 NR:ns ## KEGG: Sros_3705 # Name: not_defined # Def: hypothetical protein # Organism: S.roseum # Pathway: not_defined # 39 579 68 549 557 130 28.0 1e-28 MTAVERASLYPCRAYGQLQRFNTVETNARDVYGWRQFDPVAVGDGSGDIDWDRDPYQDEG WRLWLSSLKWIGPSIEAGREGDEEALGVAERVIRDWRADHEGGWGGDHDDAEANHHRMGV LLCFREVVADRAARSAELAEDGSLPEEYAWLDDLIGQHAAQNMARYSRRHNHGSMENLAL LGAGCVLGRPDWMEHAMERAEGDIPFQVDDQGLSNEAAPHYAQFNYVLFQAIDETAAGCG VESGAFEDAVRKMGQALPHMVDSTGSYWQYGDSAEFPVKPFDGMSDELRYAATNGAEGVA SADRVRAFDSGPVFGRSSWGTPDDGFADAAAWMLRTGTGRETKSHRGDLMQFLYTARGRQ IVEDGGHPGIVEDSWRPWGLGPTAHNVIHIPTLDEYPGAGPAERGDVWVSSDGSADGATA RQKLEVGGERARSVLVLTAPDAAVIVDRTRILDGRTDHVVETLWNLPAEFSTERVSEDTV RAVDADSGESTTLVQVRLDGEPVSRGGVHLRRGETDVEGGHAHHGWHYPAEQEREEATQV AFRSSGAESAIVSVLVPAAAGDAVRVDGESAPDGSVILTIRSEDGHARVAVQQDGTLSRL T >gi|289558582|gb|ADCD01000012.1| GENE 4 4797 - 6101 1121 434 aa, chain + ## HITS:1 COG:Cgl1113 KEGG:ns NR:ns ## COG: Cgl1113 COG0477 # Protein_GI_number: 19552363 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Corynebacterium glutamicum # 13 404 14 396 405 275 47.0 2e-73 MPSSSARSPRVPLPREIKVLVAAAFIIAIGFGIIAPLLPQYAATFDASAVGVAAVVSVFG LTRLLFAPVSGRLTNRLGETPVYMTGVLIVAASMFLVAFAQTFPQLLLFRALGGVGSTLF TVSAMAFLARKSPPTMRGRISGAYASAFLIGNIVGPIVGSALSVFGYRAPFLIYGSSLVV AAALVFFLLKDTRLADRAVRDVRPAMPVREALADPSYRAALVSFFANGWATFGVRNSVMP LFAATAFAGTGLLGWQVDGALMAGLALSVFALGNVTAVTFSSRLSDRHGRRPLILAGLLV MAVTTGVIGWMTSPLSFLLACLLAGAGTGTLNAPQQAAIADVVGQGRRSGAVMSTAQMSA DLGAISGPLLAGLVVDTAGYGWAFALTAGVVLLGALAWWRAPETNVPIVPGGPRTGSLPL VRPEDARVTPREDG Prediction of potential genes in microbial genomes Time: Thu May 26 06:53:06 2011 Seq name: gi|289558578|gb|ADCD01000013.1| Micrococcus luteus SK58 ctg1119142776960, whole genome shotgun sequence Length of sequence - 1699 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 2, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 3 - 402 276 ## COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily 2 1 Op 2 . - CDS 481 - 1167 638 ## Mlut_17770 hypothetical protein 3 2 Tu 1 . + CDS 1278 - 1698 286 ## Mlut_17780 PAP2 superfamily protein Predicted protein(s) >gi|289558578|gb|ADCD01000013.1| GENE 1 3 - 402 276 133 aa, chain - ## HITS:1 COG:Cgl0459 KEGG:ns NR:ns ## COG: Cgl0459 COG4948 # Protein_GI_number: 19551709 # Func_class: M Cell wall/membrane/envelope biogenesis; R General function prediction only # Function: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily # Organism: Corynebacterium glutamicum # 20 130 4 113 338 118 57.0 3e-27 MSTAPALPPLPGAPGGPALPSVEELLADAVAVAVPMRVRFRGTDLRHALLLRGPAGWAEF SPFPEYDPHECAAWLAAAIEAGWQGWPAPVRETVPVNATVPAVDAADVEAVLARYGDGIT AVKVKVAEHGPEG >gi|289558578|gb|ADCD01000013.1| GENE 2 481 - 1167 638 228 aa, chain - ## HITS:1 COG:no KEGG:Mlut_17770 NR:ns ## KEGG: Mlut_17770 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 228 1 228 228 401 96.0 1e-111 MTRVPPAHGHRPALRDSTGSAPGPGVEPGPRPRLSAEDLLAAREALAPFGRLSRQEPIEW AAEEPLAPDLADFYRYVGPEWLEIDTLGLPVMFFPLDRLWDEQAGYRWNHRTGALLVDWN EDWTVVAKQGADPFIHAASTGQVLMAPGDEGWEDRLDEPRPVFRDLTEMTRALAAVGTAW ARFDDPFTADWHLTEEVTAAVVAGLEEVLGSHDRAVDLARALGYLRAV >gi|289558578|gb|ADCD01000013.1| GENE 3 1278 - 1698 286 140 aa, chain + ## HITS:1 COG:no KEGG:Mlut_17780 NR:ns ## KEGG: Mlut_17780 # Name: not_defined # Def: PAP2 superfamily protein # Organism: M.luteus # Pathway: not_defined # 1 140 1 140 286 214 95.0 5e-55 MPPTARAPRRLPSWTWWLALAACVAGVALVYAALVWSSAGQVLEYQVFRAVEERYADTVP GVASQVVRILPLALAVGMALASLGALAVARWRRRGLLALLVLAGSNLTTQLLKAALPRPE HADGVPWSGGNSLPSGHMTL Prediction of potential genes in microbial genomes Time: Thu May 26 06:53:18 2011 Seq name: gi|289558560|gb|ADCD01000014.1| Micrococcus luteus SK58 ctg1119142780286, whole genome shotgun sequence Length of sequence - 14211 bp Number of predicted genes - 17, with homology - 15 Number of transcription units - 12, operones - 4 average op.length - 2.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 7 - 1038 349 ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 2 1 Op 2 . + CDS 1098 - 1760 253 ## Achl_4512 alkylmercury lyase (EC:4.99.1.2) + Prom 1845 - 1904 1.5 3 1 Op 3 . + CDS 1924 - 3294 382 ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 + Term 3359 - 3406 11.0 4 2 Tu 1 . + CDS 3417 - 3806 153 ## COG0789 Predicted transcriptional regulators 5 3 Tu 1 . - CDS 4198 - 4512 163 ## 6 4 Tu 1 . + CDS 4551 - 4766 166 ## gi|289704706|ref|ZP_06501130.1| hypothetical protein HMPREF0569_0110 + Term 4884 - 4918 -0.9 - Term 4766 - 4805 2.1 7 5 Op 1 3/0.333 - CDS 5029 - 5655 399 ## COG4300 Predicted permease, cadmium resistance protein 8 5 Op 2 . - CDS 5628 - 5987 207 ## COG0640 Predicted transcriptional regulators - Term 6158 - 6197 -0.6 9 6 Tu 1 . - CDS 6211 - 6600 261 ## COG0789 Predicted transcriptional regulators 10 7 Op 1 . + CDS 6672 - 8120 419 ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 11 7 Op 2 . + CDS 8184 - 8408 73 ## 12 8 Op 1 2/0.333 - CDS 8597 - 9508 555 ## COG1230 Co/Zn/Cd efflux system component 13 8 Op 2 . - CDS 9508 - 9882 214 ## COG0640 Predicted transcriptional regulators 14 9 Tu 1 . + CDS 9838 - 10104 122 ## COG0640 Predicted transcriptional regulators + Term 10314 - 10345 4.1 15 10 Tu 1 . - CDS 10237 - 11541 709 ## gi|289704714|ref|ZP_06501138.1| hypothetical protein HMPREF0569_0118 16 11 Tu 1 . + CDS 12241 - 13311 824 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 17 12 Tu 1 . - CDS 13335 - 14210 487 ## COG0583 Transcriptional regulator Predicted protein(s) >gi|289558560|gb|ADCD01000014.1| GENE 1 7 - 1038 349 343 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 1 324 124 444 458 139 28 1e-32 DGTRETITAAHYLVATGSTPWAAPINGLDTVDYLTSTTAMELDEVPESLLVIGGGYVALE QAQLFARLGSKVTMLVRSRLASGEEPEASRALMSVFANEGIRVIRRSTVSSITQDTDGGI AAQADIAGGRETLRASKVLIATGRRPVTDGLNLAGVSVKTGDKGEVVVEDTLVSSNPRVW AAGDVTGHPEYVYVAASHGTLMVDNAFSDAGRAVDYSHLPRVTFTSPNLAVVGMTDKQAR DAGIRCECRVVPLEYIPRAVVNRDTRGFIKMVADADTGRIVGITAVAKEAGDLAATGVYI LQAGMTVDQVANLWSPYLTMAEGIKIVAQSFKTDVSKLSCCAA >gi|289558560|gb|ADCD01000014.1| GENE 2 1098 - 1760 253 220 aa, chain + ## HITS:1 COG:no KEGG:Achl_4512 NR:ns ## KEGG: Achl_4512 # Name: not_defined # Def: alkylmercury lyase (EC:4.99.1.2) # Organism: A.chlorophenolicus # Pathway: not_defined # 2 220 3 221 221 332 75.0 5e-90 MNNISEVTDRLASNETGMEPWLWMPLLKLLALGDPVDVSDLAAATGRAGEEVRTALKAMG DTEYDGSGRIIGQGLTQRPTQHRFEVNGEQLYTWCALDTLIFPTLLGASARIESSHQATG TPVRVAVTAMGVTSVEPATAVVSLVNPEDISSVRSSFCNQVHFFASPDNAAPWLETHPGG TIMPVKEAHELGSSMAEKMLTHTPGPATDQVSNGVQSCAC >gi|289558560|gb|ADCD01000014.1| GENE 3 1924 - 3294 382 456 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 5 449 4 448 458 151 26 2e-36 MSEHFDVAVLGLGPGGEVAADRLLKAGKNVVVFERELIGGECAYWACIPSKTVLRPPEAR TEVQRAAGVSGAELDWAATAKYRDYMIRNLDDQAQVDGYIKEGAVVIKDEARITGPGRIQ AGDREITAEHIIIATGSDAVIPPLDGIDQITAWTNRETYTTSTLPERAVIIGGSAVGVET ATFLARFGVAITLIHCGERLLDREGPRVGELAHQYLQEAGIDIRLATSAVQARREGADSI IELQTRDGDPAGEVAADVVIFGTGRTPRTEGLGFEHAGVTLGDHGEIQIDDHCRAGENTW AIGDVTGIMPFTHVAKYQGRIAADAILGRPHPATYDGIPHVVFTDPEIAGAGLTQEQATK QGIRTIATELDLADAIARPWTYEQDPRGHLGLLADADRKILIGAWAVGPMAGEWIHHASL AIRTQLPIDTLLDQVAQFPTYHEAYQVALEQLDLTP >gi|289558560|gb|ADCD01000014.1| GENE 4 3417 - 3806 153 129 aa, chain + ## HITS:1 COG:MT3438 KEGG:ns NR:ns ## COG: MT3438 COG0789 # Protein_GI_number: 15842931 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Mycobacterium tuberculosis CDC1551 # 1 126 1 126 146 103 44.0 1e-22 MRIGEVAAASGVTTKALRFYEERGLLPQADRATNGYRDYPEDTIVRLEFIRRSQVAGLTL AEILDILQIRDAGTAPCGHVRDQLAEHLTNLDRHIAELTALRETVAGLHGTAAAGDPAQC NAEVICSYL >gi|289558560|gb|ADCD01000014.1| GENE 5 4198 - 4512 163 104 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MCVPGGSPAAGDGPDHTEDEAEQEKPPSEQSPPFQTREVEDAQPAQLDERADDAQAGVGG GTLVHEPSAASLPTGHQGPCGGRPGRYTPLHAPPAHETITSETA >gi|289558560|gb|ADCD01000014.1| GENE 6 4551 - 4766 166 71 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289704706|ref|ZP_06501130.1| ## NR: gi|289704706|ref|ZP_06501130.1| hypothetical protein HMPREF0569_0110 [Micrococcus luteus SK58] # 16 71 1 56 56 95 100.0 1e-18 MRRTTYLRILAGLLLMVLLVWFWGRYALFPMEMTTGNARFIGWGLALLAGYGSYRLWMKA AELSEDGHDTL >gi|289558560|gb|ADCD01000014.1| GENE 7 5029 - 5655 399 208 aa, chain - ## HITS:1 COG:Cgl0883 KEGG:ns NR:ns ## COG: Cgl0883 COG4300 # Protein_GI_number: 19552133 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted permease, cadmium resistance protein # Organism: Corynebacterium glutamicum # 12 208 3 198 198 243 84.0 1e-64 MRRSWGGRMSLTSVLQAMGLFAATNIDDIIVLSLFFARGAGQRGTTARILAGQYLGFAGI LGAAVLVTIGAGAFLPSAAIPYFGLIPLGLGLWAAWQAWRGDDDDDDDEAKVAGKKVGVW TVAGVTLANGGDNIGVYTPVFLSVKPLAVVAYCIVFLALVAVLVALAKFVATRPPIAEVL ERWEHVLFPIVLIGLGIVILVSGGAFGL >gi|289558560|gb|ADCD01000014.1| GENE 8 5628 - 5987 207 119 aa, chain - ## HITS:1 COG:Cgl0882 KEGG:ns NR:ns ## COG: Cgl0882 COG0640 # Protein_GI_number: 19552132 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Corynebacterium glutamicum # 1 119 1 119 119 166 74.0 9e-42 MMTIASRLDVMNRLGRALADPTRSRIILTLLDHPAYPAELARDLDLTRPNVSNHLACLRD CGIVVSEPEGRRTRYEIADSHLAQALTALVDATLAVDEDAPCIDPACSLPGCDAAGEGA >gi|289558560|gb|ADCD01000014.1| GENE 9 6211 - 6600 261 129 aa, chain - ## HITS:1 COG:MT3438 KEGG:ns NR:ns ## COG: MT3438 COG0789 # Protein_GI_number: 15842931 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Mycobacterium tuberculosis CDC1551 # 1 126 1 126 146 124 50.0 5e-29 MRIGEVARASGTTSKTLRYYEEVGLLPAADRTPAGYRDYGAEVLDRLDFIRRGQAAGLTL AQIGQVLDIRDRGQAPCRHVTHLLDTRLDVIDRQLAELAQLRTTIADLREDAAAGDPATC SPEDVCRYL >gi|289558560|gb|ADCD01000014.1| GENE 10 6672 - 8120 419 482 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 10 477 4 458 458 166 27 1e-40 MTATANSRSYDLAMIGSGGAAFAAAIRATNLGRRVVMIERGTVGGTCVNTGCVPSKALLA TAEARHVTLDASRFPGLPLPEVRPVDMPALIAGKDRLVGSLRGEKYLDLATEYGWDFHPG DATFVGTPSEPALRVTGPDGTVETVRAAHYLIATGSRPWAPPVPGLQEAGYLTSTTAMEL DHVPESLLVIGGGYVAMEQAQLFARLGVRVTMLVRSRLASQEEPEASTALDEIFTDEGIQ IIRGAVPSAVRRDPATGEVTVTATTTDGSQELRAAEVLVATGRRPVTATLGLDTVDVRTG DHGEVVVDSHLRSTNPRVWAAGDVTAHRQFVYVAAAHGALVADNALTGAGLEVDYRHLPR VVFTSPALAAVGMTERQASAAGIRYDSRVLSLAHVPRAIVNRDTRGFIKMVTDADTGRII GITALAQDAGDLAAAGVYMLEAGMTTSQVANLWSPYLTMAEGLKLTAQAFTTDIAKLSCC AA >gi|289558560|gb|ADCD01000014.1| GENE 11 8184 - 8408 73 74 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MGADQPYLLAPLRIGPATTGEFSRCKNSRPRPISGRLHDLYVLDPTRTALDDAMTALRRR HEAAVRLGRVTAPP >gi|289558560|gb|ADCD01000014.1| GENE 12 8597 - 9508 555 303 aa, chain - ## HITS:1 COG:lin2720 KEGG:ns NR:ns ## COG: lin2720 COG1230 # Protein_GI_number: 16801781 # Func_class: P Inorganic ion transport and metabolism # Function: Co/Zn/Cd efflux system component # Organism: Listeria innocua # 19 299 21 301 303 177 34.0 3e-44 MGAGHSHAPATGHAGGRYRRRLAGAFALTAGFFLIELVAGLVSGSLALLSDAGHMAADVV VLGAALLATRIASRPDSTGRRTYGSYRAEVFASALAVLAMLAVGVYVVVEAISRLGDAPE VASGAMLAVGFAGLVINIISMLLLRSGAKDSLNVKGAYYEVIADAAGSVGVMVAGVLIIL TGQPIWDVVVAALIAVFVIIRAVVLGRQVIAVLGQHAPEGVDPEDVAGDLDAVEGVEEVH DLHLWTLTSGMNVATAHLVADQGADHGAVLAGARRVLRDRYGIAHATLQVEGAGSDGCHD LSW >gi|289558560|gb|ADCD01000014.1| GENE 13 9508 - 9882 214 124 aa, chain - ## HITS:1 COG:DRA0071 KEGG:ns NR:ns ## COG: DRA0071 COG0640 # Protein_GI_number: 15807739 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Deinococcus radiodurans # 7 119 13 124 125 97 50.0 4e-21 MSVTPLDSCQVTAVHPEKVALTRERIPDEREAGRLAGLFKLLGDPRRARVLYALLEAGEL CVCDLAASVDVAEASVSQVLRVLRTAGVVENRREGRMVYYRLADGHVRMLLDVSREHARH EGQG >gi|289558560|gb|ADCD01000014.1| GENE 14 9838 - 10104 122 88 aa, chain + ## HITS:1 COG:Cgl0882 KEGG:ns NR:ns ## COG: Cgl0882 COG0640 # Protein_GI_number: 19552132 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Corynebacterium glutamicum # 42 85 1 44 119 79 88.0 1e-15 MDGGDLTRIQRRHTHATTIHLCRYQQREPHTRGQQVLYGQRMLTIASRLDVMNRLGRAMA DPTRSRILMTLLEGPSYPAVLARDLGRV >gi|289558560|gb|ADCD01000014.1| GENE 15 10237 - 11541 709 434 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|289704714|ref|ZP_06501138.1| ## NR: gi|289704714|ref|ZP_06501138.1| hypothetical protein HMPREF0569_0118 [Micrococcus luteus SK58] # 1 434 32 465 465 787 100.0 0 MLTFEGPIGPVPADRAFPRTWSLEGRSSEHVHEWADLPRLRELRLRYAHPEHLAQLAGFR VEDLDMFHGTGLPAGSVWPELPTVVRAHWALMPVVALQGLNAPALEEVMVDGVHECLALE DLLASSPVKDLQVYDVRQVPLPQAVWDAAAGIEQVNWGGDLKANLWLMELAVGPVSRLPA GVRTPERRLMKRGLGVRNASMDAATWTAGDAGSDAVRAVLPAPSAEVADLLQRMGVADPG VFWGGLLSVRWPCLPEAGVRIALEDGATVVRGPRVEVEDTVALLAWWCSSPEVLASVVDV MVTAGLAGEAFAGGAPAVVPVSRLVTGTSVASIEKLEERTYVLTMPMQPVPVTQMLESRG LEHSGHTWDQILELGFPAEVRRVELDPEADVFMAYGTRPALKKVQVVLDRLTQDADELVA CLERIKASGDAIDC >gi|289558560|gb|ADCD01000014.1| GENE 16 12241 - 13311 824 356 aa, chain + ## HITS:1 COG:Cgl1902 KEGG:ns NR:ns ## COG: Cgl1902 COG0454 # Protein_GI_number: 19553152 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Corynebacterium glutamicum # 176 337 166 327 341 67 32.0 4e-11 MPDIIEFPLPASSDDPHWRAYCQLGDEYNHELIGTTEWDETPTDALIQATAETDHTLRRY LAYVDGEAVGYARVLVNHVDDPDAAALNVYVHPRHRGRGHGRALAERLVLDTAGLTRFET WPLTPRPVAGQRALTPPNGAGAVPAEHPGVRLAQSYGFALVQIERVSRYDFADPGIDPAV ALAEAERASSGYELHAWEGAADTSLQDDLAVLKARMATDMPSGERTVVEQVWDAARVRRM DEQILTTGRLFRAVARYRATGRIVALSELVAPRSRPDGLIDQWDTIVLPEHRGHRLGMRV KAANLIAVREALPEARAIITWNAEENRHMLDVNEALGFRPVLAEASMEAPAPLRRR >gi|289558560|gb|ADCD01000014.1| GENE 17 13335 - 14210 487 291 aa, chain - ## HITS:1 COG:MT2039 KEGG:ns NR:ns ## COG: MT2039 COG0583 # Protein_GI_number: 15841463 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Mycobacterium tuberculosis CDC1551 # 5 284 10 289 303 188 42.0 1e-47 HEPDQLQALRAIADEGSFEAAAYELGVSASAVSQRIRTLEREVGQVLLRRGTPCEPTEAG VGLVRVARHMRVLEQEAWAGLGRTAAGRSVTSLAVPADVLGTWFGPVLAEAADWDDTVLD LHVEDQDHSARLLRRGEVLAAVTTEPQPVQGCAAESLGSMRYVPLVAPALLARHAAGDVV DLGAMPMMRYNAKDDLQRLALSGAGLDVAPPTHLAPSFDGFHRSVRAGLGWGMLVNAQAV EDVRAGRLVRVPGLDDVLVPLYWQAATLPVTRLVRLTRAVREAAQRTLERG Prediction of potential genes in microbial genomes Time: Thu May 26 06:54:03 2011 Seq name: gi|289558527|gb|ADCD01000015.1| Micrococcus luteus SK58 ctg1119142780297, whole genome shotgun sequence Length of sequence - 26406 bp Number of predicted genes - 31, with homology - 28 Number of transcription units - 15, operones - 5 average op.length - 4.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 4715 3572 ## COG1201 Lhr-like helicases 2 2 Tu 1 . + CDS 4721 - 6364 859 ## COG0657 Esterase/lipase 3 3 Tu 1 . + CDS 6969 - 7388 77 ## 4 4 Tu 1 . - CDS 7519 - 8706 971 ## Gobs_3579 phage major capsid protein, HK97 5 5 Tu 1 . + CDS 8863 - 9171 102 ## 6 6 Op 1 . - CDS 9013 - 9249 175 ## gi|289704723|ref|ZP_06501146.1| hypothetical protein HMPREF0569_0459 7 6 Op 2 . - CDS 9246 - 9449 127 ## gi|289704724|ref|ZP_06501147.1| hypothetical protein HMPREF0569_0460 8 6 Op 3 . - CDS 9468 - 9683 176 ## gi|289704725|ref|ZP_06501148.1| hypothetical protein HMPREF0569_0461 9 6 Op 4 . - CDS 9680 - 9940 260 ## gi|289704726|ref|ZP_06501149.1| hypothetical protein HMPREF0569_0462 10 7 Op 1 . - CDS 10200 - 10595 214 ## gi|289704728|ref|ZP_06501151.1| hypothetical protein HMPREF0569_0464 11 7 Op 2 . - CDS 10592 - 11353 397 ## gi|289704729|ref|ZP_06501152.1| hypothetical protein HMPREF0569_0465 12 7 Op 3 . - CDS 11353 - 11685 184 ## gi|289704730|ref|ZP_06501153.1| hypothetical protein HMPREF0569_0466 13 7 Op 4 . - CDS 11682 - 11972 210 ## gi|289704731|ref|ZP_06501154.1| hypothetical protein HMPREF0569_0467 14 7 Op 5 . - CDS 11969 - 12460 334 ## gi|289704732|ref|ZP_06501155.1| hypothetical protein HMPREF0569_0468 15 8 Tu 1 . - CDS 12627 - 12893 176 ## nfa2410 hypothetical protein 16 9 Op 1 . + CDS 12935 - 13234 192 ## gi|289704734|ref|ZP_06501157.1| toxin-antitoxin system, antitoxin component, Xre domain protein 17 9 Op 2 . + CDS 13247 - 14392 727 ## COG0582 Integrase + Term 14397 - 14446 19.4 - TRNA 14443 - 14533 62.4 # Ser CGA 0 0 - Term 14385 - 14434 19.4 18 10 Tu 1 . - CDS 14608 - 15060 395 ## COG0590 Cytosine/adenosine deaminases 19 11 Tu 1 . + CDS 15198 - 15833 590 ## COG0035 Uracil phosphoribosyltransferase 20 12 Tu 1 . - CDS 16048 - 16602 176 ## 21 13 Op 1 . + CDS 16309 - 17097 690 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 22 13 Op 2 . + CDS 17168 - 17692 428 ## COG2062 Phosphohistidine phosphatase SixA - TRNA 17779 - 17855 81.9 # Arg ACG 0 0 23 14 Tu 1 . + CDS 17971 - 19944 1877 ## COG1274 Phosphoenolpyruvate carboxykinase (GTP) 24 15 Op 1 13/0.000 + CDS 20188 - 20490 188 ## COG0831 Urea amidohydrolase (urease) gamma subunit 25 15 Op 2 17/0.000 + CDS 20511 - 20945 397 ## COG0832 Urea amidohydrolase (urease) beta subunit 26 15 Op 3 10/0.000 + CDS 20968 - 22683 1580 ## COG0804 Urea amidohydrolase (urease) alpha subunit 27 15 Op 4 16/0.000 + CDS 22697 - 23188 409 ## COG2371 Urease accessory protein UreE 28 15 Op 5 17/0.000 + CDS 23250 - 23906 618 ## COG0830 Urease accessory protein UreF 29 15 Op 6 9/0.000 + CDS 23989 - 24600 624 ## COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase 30 15 Op 7 . + CDS 24593 - 25447 550 ## COG0829 Urease accessory protein UreH 31 15 Op 8 . + CDS 25486 - 26397 729 ## COG3376 High-affinity nickel permease Predicted protein(s) >gi|289558527|gb|ADCD01000015.1| GENE 1 2 - 4715 3572 1571 aa, chain - ## HITS:1 COG:MT3395 KEGG:ns NR:ns ## COG: MT3395 COG1201 # Protein_GI_number: 15842887 # Func_class: R General function prediction only # Function: Lhr-like helicases # Organism: Mycobacterium tuberculosis CDC1551 # 12 1571 4 1400 1513 1298 55.0 0 MSGPAETAAGSATPAADVVLGRFTEPTRAWFTGAFEAPTPAQLGAWDAISSGRHALVIAP TGSGKTLSSFLWALDSFVREPAAEGTAATRVLYVSPLKALGVDVERNLRAPLVGITQTAA HQGRPVPRVRVGVRSGDTPAAERRRLQQDPPDILITTPESLYLMLTSQARAALAGVRTVI VDEVHAVAGTKRGAHLAVSLERLDALLDTPVQRIGLSATVEPAAEVARFLGGTQPVTVVR PASAKRWDLTVTVPVPDLTDLSSPAAAHDLGPGSSTGGLDGEGAVPGGSIWPHVEERIVD LVAERRSTLVFANSRRLAERLTGRLNEIWEARAEAAAAAEHPDAVPGFRTPDPTGFHGPA QVAGQAGTGSGTVSDFARAHHGSVSKEQRAIVEEALKTGQIRCVVATSSLELGIDMGAVD QVIQVESPPSVASGLQRVGRAGHQVGEVSRGVFFPKHRGDLVDTAVVAERMTAGRIESLR IPANPLDILAQQTVAAVAVADLDAQEWFDLVRRSAPFATLPFSAYESVLDLLAGRYPSDE FAELRPRILWDRENGTLAARPGAQRLAVTSGGTIPDRGLFGVFLASDGGADGTPGGAAAG DTAESVGTASAGSARSGGRRVGELDEEMVYESRVGDVILLGATSWRIVDITADRVLVLPA YGQPGKLPFWRGDAAGRPAELGDAVGRFRRELDADPEAGRTRLGAAGLDPWAQDNLLAYL KDQREATGVLPTEQTLVVERFTDELGDWRVVLHSPYGMAVHAPWALAVGARLAQRYGLET GSGAAMAADDGIVLRIPLMDAEPPGAELFEFTAEELDEIVTAEVGGSALFAARFRENAAR SLLLPRRDPGRRTPLWQQRQRSAQLLDVARKHPRFPVILETVREVLQDVYDLPALKELAG RVASRAVRLVEVTTTAPSPFSQSILFGYIAQFIYEGDSPLAERRAAALSLDPALLSELLG TEELRELLDAEVIAEVEAQLQRLAPDRRARGVEGVADLLRLLGPLSAAEAARRTRAEGEG EAEEAADEDAVAGMLAELERAGRAFRLRQDGVERFAAVEDAARLRDALGTPIPHGVPTAF LDPVDDPLGDLVGRYARTHGPFTAAEAGAALGLGGAVVLSVLQRLATERRVSTGAFRPEG TPGAAGLDAEWCDAEVLRRIRMRSLAALRAEVEPVDQAAYARFLADWQHLRPRAGRDGAW RPPATLDGVDGVATVLDQLAGTPLPASAWESLVLPARVRDYAPALLDELLATGEYVWSGV GEATGNDGWVALHPADAVDLTLRLPEPAEETPADAALRAAVLEVLAGGGAWFFPQLVERV RAVQAAAGDGGTGAAGGAVGPDPHRGPADLARGPAVLGALWGLVWDGRVGNDTFAPVRGL LSLGKTAHRTGRQMPRARTARTGGAAGAAAGRGLGGRLAGVRGRGRYAGLTSSEDGARGS AGLTAGTVGLSAAEQARSAGRWSLLPAAEQDPTIRAHATAELLLDRYGVITRGSVVAEEV PGGFAGQYRLLTRMEDAGQVRRGHFVDGLGGAQFSTGAVVDRLRGFQRDEEDAAVDAAPL ALALAATDPAN >gi|289558527|gb|ADCD01000015.1| GENE 2 4721 - 6364 859 547 aa, chain + ## HITS:1 COG:YPO2336 KEGG:ns NR:ns ## COG: YPO2336 COG0657 # Protein_GI_number: 16122560 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Yersinia pestis # 254 492 72 293 334 84 26.0 6e-16 MVRSAGGDLLGSVDLLRQDQPHELVREDERGQGPDAVRAGVDPGVHPVRASDHHRHRGAD VEPALQVPRQTRRVERRPPLVQQDQVLVRADRAQDPVRLLRARRLLLPRGVRQQTPREVV GLLEAPLVAVDPVDDPRLMLLADGQHPNRHGPMIAPAADTVRGSAAAARLRSPGRGAWLR TGRGPMTSATRSARVSRRAALGLGVGALAVGGVAVVADLAGAPAGPLGANATALYGMRSS TGHTYAALPGRAGRIDVYRPPGQGPFPVLVWNAGSGWRGDRGYSDGADIARGLVPHGYAV AAFSVRSSKQGTFPAQVEDATAAVRWVRRNAPGLQLDAGRVAVAGSSSGGWNALMAGLTG GQDLDREQVPPPGREVPDGGHAIPEEDRVQAIVDFFGPTDFLTMNRQMLPGACADYNRAN RLEHCHLDDRSTKSDMLGVPVLASGGLTRLASPITHVRPDSPPLLVVHGRKDVTVPWGQS LELYQAAEAAGLRTAFYSVAEGGHDLGMMTAKTRSAEVLRNGVPASAVHATISWSAVASF LDAVLPR >gi|289558527|gb|ADCD01000015.1| GENE 3 6969 - 7388 77 139 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTTGRQSGRPPFAKTETPLPLGRSPVADRGRALRVGGRGTVPTTGCTVAADVLGAGVGTA VVGVSQIPALGRGDGLLAACAQGLAGLDEWPVPLTDALVRCTVATGRRAAQRHGASSWWL WPAPAPWGAGAVVSALGGL >gi|289558527|gb|ADCD01000015.1| GENE 4 7519 - 8706 971 395 aa, chain - ## HITS:1 COG:no KEGG:Gobs_3579 NR:ns ## KEGG: Gobs_3579 # Name: not_defined # Def: phage major capsid protein, HK97 # Organism: G.obscurus # Pathway: not_defined # 159 390 152 401 411 68 29.0 6e-10 MTTQSPYSLERRAALLKEAESIVTRVKATGQHAVSGADQARVTDLLAEVDKIDEHRKKAA ESDALMARLCSHTAPDVAGFDSPDMPGVKEGLARAVASKSTFGYNLPIKSGRDLALKSFS TTTSADGSSVARIGDTAQAGGAGGVSLAPDAATSTPLRDLFPVTTTANGVERYYKFSVGR GADVVAEGGIKPELDTSVTPVTEALQKIAVRFQFTDELAQDAAFLVNYLQQLAARAVLAR ENKLILDLLDAQTDALTSTGTEDKAVDVLAGAIAAAQATNGLNPGTIVANPVDVAKIRMV KAAGSGEYAIDPMAAAAPTIHGVPLASTAAATPGTIYLLSPGFGHFYQHATGLRVEVGAT GDDFITNQMTCRVEERVLPVVLQPTLITRVKLTTA >gi|289558527|gb|ADCD01000015.1| GENE 5 8863 - 9171 102 102 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MRPHGSAARVLGLHLRSSGGGALPCPVLGPVWLVGVSCAPTARIPPGGVGSQRDPLLAQP ARPLGGVHVLVAHTRPEVHEGGEAGHEAAQLVGVHPGEGVDG >gi|289558527|gb|ADCD01000015.1| GENE 6 9013 - 9249 175 78 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|289704723|ref|ZP_06501146.1| ## NR: gi|289704723|ref|ZP_06501146.1| hypothetical protein HMPREF0569_0459 [Micrococcus luteus SK58] # 1 78 1 78 78 114 100.0 2e-24 MTRIADDELSAVALSIVEAVASRDTGLAVHALARMDADELRRLVPRLASLVDLRARVGDE DMNTAEWARWLREQGITL >gi|289558527|gb|ADCD01000015.1| GENE 7 9246 - 9449 127 67 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|289704724|ref|ZP_06501147.1| ## NR: gi|289704724|ref|ZP_06501147.1| hypothetical protein HMPREF0569_0460 [Micrococcus luteus SK58] # 1 67 1 67 67 106 100.0 5e-22 MMTVTVEPAPDPDPHRSSSGAPIPTEPGTTRAWLAHEEFRARTAWMNVPAEQLNGQTLSD LANGGPR >gi|289558527|gb|ADCD01000015.1| GENE 8 9468 - 9683 176 71 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|289704725|ref|ZP_06501148.1| ## NR: gi|289704725|ref|ZP_06501148.1| hypothetical protein HMPREF0569_0461 [Micrococcus luteus SK58] # 1 71 1 71 71 91 100.0 1e-17 MSRRGPAPEPIGAAPVRPVQLHRLDLARRALAARYGVPVSRIRGRTVPDLERSARALAAE HHPHDDGPAAA >gi|289558527|gb|ADCD01000015.1| GENE 9 9680 - 9940 260 86 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|289704726|ref|ZP_06501149.1| ## NR: gi|289704726|ref|ZP_06501149.1| hypothetical protein HMPREF0569_0462 [Micrococcus luteus SK58] # 1 86 1 86 86 123 100.0 3e-27 MTSPEMTAYPFTSAEPPTVSDFETALGVLAYVRTVRDVASPAASHYQQTRDMLVEAATQV RQLAPFLAVPDAEDHEDHDEAEEVPA >gi|289558527|gb|ADCD01000015.1| GENE 10 10200 - 10595 214 131 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|289704728|ref|ZP_06501151.1| ## NR: gi|289704728|ref|ZP_06501151.1| hypothetical protein HMPREF0569_0464 [Micrococcus luteus SK58] # 1 131 1 131 131 157 100.0 2e-37 MSPRRRDEPAPNFTQPALPDLEDLEPTPAERERPAPPSGRPPLRLATVTELRPVSMGARA LDLVAALRAVGVVLDGHQALTLVHAGTVAPIAWAGDGDTPATRAKAATTTAALAADLARR RAEHHTREVLP >gi|289558527|gb|ADCD01000015.1| GENE 11 10592 - 11353 397 253 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|289704729|ref|ZP_06501152.1| ## NR: gi|289704729|ref|ZP_06501152.1| hypothetical protein HMPREF0569_0465 [Micrococcus luteus SK58] # 1 253 1 253 253 425 100.0 1e-117 MGATNVAQVFAHWTHLGHREARLLAFLALVSLDAGNPPVYFGGWADAARAIGLDPEGNPS SARKNVRQAFQRLATAGALVSSGKAHTGRRAEYALTLDPACTVVASGTATGPHGRTVTTW TRVDRATGRPVDKSARIWERGTGTVPQRETGTVPQKGDRNGPKRETASVSPRRDDEPHQE HGEENIALDATSSTPASARDHRAAAAWLVSQPDHGRAALADAVANRASLPEPEAIILTAR MAGWIPEAEEVPA >gi|289558527|gb|ADCD01000015.1| GENE 12 11353 - 11685 184 110 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|289704730|ref|ZP_06501153.1| ## NR: gi|289704730|ref|ZP_06501153.1| hypothetical protein HMPREF0569_0466 [Micrococcus luteus SK58] # 1 110 1 110 110 143 100.0 4e-33 MSTRPVPEPASRALWLHALTHSELRRGARLAGLALATRATSSGRAHLTVPDVAELAGVHP STARRALADLHAAGYLEPAPVSPYSGAGAARTTYRLTVPVPAVSVERGAA >gi|289558527|gb|ADCD01000015.1| GENE 13 11682 - 11972 210 96 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|289704731|ref|ZP_06501154.1| ## NR: gi|289704731|ref|ZP_06501154.1| hypothetical protein HMPREF0569_0467 [Micrococcus luteus SK58] # 1 96 1 96 96 97 100.0 3e-19 MITSTPAQRAARSANGKKAAAVSIAAARERAAARLDDLEFLAAQGANRAEAARRAGFPSV PALVRFLSRHRRLDLVAALPTEHQARRRGDYYRAAA >gi|289558527|gb|ADCD01000015.1| GENE 14 11969 - 12460 334 163 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|289704732|ref|ZP_06501155.1| ## NR: gi|289704732|ref|ZP_06501155.1| hypothetical protein HMPREF0569_0468 [Micrococcus luteus SK58] # 17 163 1 147 147 262 99.0 4e-69 MTQHPTTPGRDRTPAPVFPSPTLPEPRDSDQDPDLIPVYGHCAPFCSMDGPASGQTVAEH GHVCEGRGFPVAAWGAREDARTVWASLVQHYRHGAYAPEDVTGRPAVPLVQLIWEDASST TGQAWGAFITPAHARSLAAALVHLADTAEGLDLPARRGGGEAR >gi|289558527|gb|ADCD01000015.1| GENE 15 12627 - 12893 176 88 aa, chain - ## HITS:1 COG:no KEGG:nfa2410 NR:ns ## KEGG: nfa2410 # Name: not_defined # Def: hypothetical protein # Organism: N.farcinica # Pathway: not_defined # 19 80 8 66 68 61 51.0 7e-09 MCNHPLIGYPNRSWHIGGRPMKELMTPDELSEYTGTPVHTLAHWRYVGRGPRFVKLGRAV RYRAEDVRAWLEAQTRQSTAETGPSRAA >gi|289558527|gb|ADCD01000015.1| GENE 16 12935 - 13234 192 99 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289704734|ref|ZP_06501157.1| ## NR: gi|289704734|ref|ZP_06501157.1| toxin-antitoxin system, antitoxin component, Xre domain protein [Micrococcus luteus SK58] # 36 99 1 64 64 117 100.0 3e-25 MTRHESPPGGRPYGREFVEEVGPNFARHLRTRRVAMGMSQQHVVLFLEVEHGIAWHQTVV AKIEAGQRQVKLTEAFALADVLGLPLEQLIRGDVAHSRR >gi|289558527|gb|ADCD01000015.1| GENE 17 13247 - 14392 727 381 aa, chain + ## HITS:1 COG:L48477 KEGG:ns NR:ns ## COG: L48477 COG0582 # Protein_GI_number: 15672029 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Lactococcus lactis # 78 365 84 392 394 87 27.0 6e-17 MASVEKYVTKAGTLWKVRYRTPRRTTTEKRGFRTKRDAEAFAASVEVSKLRGEFIEAGAA RATVGALAGPWVQRQGHLKPSALRPVESALRVHVLPRWGSIPVAEVRTTDVQQWITDLSR GRPEATPPTSGRSATTVARCFGVLAAILDDAVADRRIVTNPARGVKLPKRTPKPRVYLSH EQVHAFARASKYPTLVLVLAYTGLRWGEASALRVRHLDMLRRRIKVEENAVDVGGVVHVG TPKTHRVRVVPFPRFLGDALAAQCEGKGRDELVFPGPGGGYMSPARVHEGHGSWWGAAVR AADVPRVTPHDLRHTAASFAVSAGANVKAVQRMLGHASAAMTLDVYADLFDEDLNAVADR LDAVVAERIAFDSRLIEAPGT >gi|289558527|gb|ADCD01000015.1| GENE 18 14608 - 15060 395 150 aa, chain - ## HITS:1 COG:Cgl0229 KEGG:ns NR:ns ## COG: Cgl0229 COG0590 # Protein_GI_number: 19551479 # Func_class: F Nucleotide transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: Cytosine/adenosine deaminases # Organism: Corynebacterium glutamicum # 15 149 30 159 159 143 58.0 1e-34 MGLALRAARAAGAAGDVPIGAALVAGDGTVLAVVGNEREQHHDPTAHAEVLALRRGAELR AAAGAGDGWRLTDCTLVVTLEPCPMCAGALLLARIPRVVFGAWDPKAGACGSVLDVVRDP RFNHQVQVRAGVRSEESAALLRGFFAAQRD >gi|289558527|gb|ADCD01000015.1| GENE 19 15198 - 15833 590 211 aa, chain + ## HITS:1 COG:SA1914 KEGG:ns NR:ns ## COG: SA1914 COG0035 # Protein_GI_number: 15927686 # Func_class: F Nucleotide transport and metabolism # Function: Uracil phosphoribosyltransferase # Organism: Staphylococcus aureus N315 # 2 208 3 207 209 214 51.0 8e-56 MRVHIVDHPLVAHKLSVLRDKKTPSMIFRQLTEELVMLLAYEATRDVAMEEVRIETPVAE TTGFRLARPRPLVVPILRAGLGMLEGMTKMAPSAEVGFLGMARNEETLDIVTYAERLPAD LSGRHVFVLDPMLATGGTLIEAIRFLYQRGAARVTCLCLLGAPEGIERLEASLGDVEVDL YLAAVDERLDERSYIVPGLGDAGDRLYGLAE >gi|289558527|gb|ADCD01000015.1| GENE 20 16048 - 16602 176 184 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MAQLVGQPREGGAGGRGGQLVHAHVDDEPTRLVLPGHRLGARNAVRRQDRRRRRLGVGGV GATGQAQACTGLASAGHAVGPALRIADGDVHVSGGLTHGHHSSFGSWPLHRSVGAADEAS HDKNVTSPRRLASNVRGFVSLFERTSPECAQHHYSRIGIALRDRSARPHNSFSVPQGRAC RTYQ >gi|289558527|gb|ADCD01000015.1| GENE 21 16309 - 17097 690 262 aa, chain + ## HITS:1 COG:aq_319 KEGG:ns NR:ns ## COG: aq_319 COG0745 # Protein_GI_number: 15605840 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Aquifex aeolicus # 158 246 139 226 228 76 42.0 5e-14 MGQSAGYVHISVRNAQRRADGMSRRGQARAGLRLAGGTDAPDSQTAPTPVLAPNGIPGPQ AVARENEARGFVIYVGMDELAASAAGTSLTRLANELRHYVESLVPGAESHAAVALAPAGA EGRDLEVVRQVLGDPTVQGSTRPDLAQAPAPVSTRQPGVLIDLSRREVQLDGESLNLTFK EFELLNYLVENGERTVGREELLDALWRNADEVPNERTIDVHIRRLRAKLGRLANTVRTVR GQGYRFYRHPEVVVWAAPEYSI >gi|289558527|gb|ADCD01000015.1| GENE 22 17168 - 17692 428 174 aa, chain + ## HITS:1 COG:MT1313 KEGG:ns NR:ns ## COG: MT1313 COG2062 # Protein_GI_number: 15840723 # Func_class: T Signal transduction mechanisms # Function: Phosphohistidine phosphatase SixA # Organism: Mycobacterium tuberculosis CDC1551 # 7 172 6 167 168 107 41.0 1e-23 MSTADAKTLIVLRHAKAGWPDAADDHARPLAERGHAQAPAAGDWLREHDLVPDAVVCSDA LRTRQTCVWVCERLGELAPTPYLDPRLYGADAARALAVVNETEETTRRLLVVGHMPWVQE LGMRLMSLDSDQDAALRMSEHYPTLGMQVFRVEKPWAELDGRDAALTHFVVPGR >gi|289558527|gb|ADCD01000015.1| GENE 23 17971 - 19944 1877 657 aa, chain + ## HITS:1 COG:ML2624 KEGG:ns NR:ns ## COG: ML2624 COG1274 # Protein_GI_number: 15828418 # Func_class: C Energy production and conversion # Function: Phosphoenolpyruvate carboxykinase (GTP) # Organism: Mycobacterium leprae # 50 656 2 607 609 768 60.0 0 MIAALGYHGRTVRPQRCGARFGGARIGVDGTERPRTPMGGLSTMADNATTSFADRALADA PTDYAQLREWVAQIAELTQPDSVQWVDGSEEERDRLADELVAAGTLTRLAEDKFPHSFAA FSDPADVARVEDRTFICSEKEEDAGFTNNWMDPAKMHGILDDAFTGAMRGRTMYVIPFVM GHLDAEDPKYGVEITDSAYVVLSMRIMARIGQDVLDKMSREQAFYVPAVHSVGAPLEPGQ EDVPWPCNETKWIVHFPEERSIWSFGSGYGGNALLGKKCYALRIASVMARDEAWLAEHML ILKLTNPEGRSYHITGAFPSACGKTNLALIDPTIEGWKAETLGDDITWIRAGKDGEFRVI NPETGYFGVAPGTGWSTNPNAMRAISKGNSIFTNVALTDDGGVWWEGMTDEVPEHLTDWR GNDWTPESGTPAAHPNSRFCTPIEQTDMLADEYRDPRGVKLDAILFGGRRKTTVPLVTEA FDWEDGILKGATLSSETTAAAAGAVGVVRRDPMAMLPFLGYDAGDYLAHWVRESGKADPE KLPRIYLVNWFRRSRDGGFAWPGFGENSRVLKWIVERLEGKAEAEETPIGLVPAAGSLDL SGIEVSAEDLEDALKVDAAEWAEENEQIEQWLGRFGESLPQAIRDRFEAQKARFAQA >gi|289558527|gb|ADCD01000015.1| GENE 24 20188 - 20490 188 100 aa, chain + ## HITS:1 COG:Cgl0084 KEGG:ns NR:ns ## COG: Cgl0084 COG0831 # Protein_GI_number: 19551334 # Func_class: E Amino acid transport and metabolism # Function: Urea amidohydrolase (urease) gamma subunit # Organism: Corynebacterium glutamicum # 1 100 1 100 100 150 77.0 5e-37 MHLQPKDLEKLLVVVAADLARRRQQRGLKLNHPEAIAIITYELMEGARDGRSVADLMSWG STILTVDDVQEGVADMISMVQVEATFPDGTKLVTVHDPIR >gi|289558527|gb|ADCD01000015.1| GENE 25 20511 - 20945 397 144 aa, chain + ## HITS:1 COG:Cgl0085 KEGG:ns NR:ns ## COG: Cgl0085 COG0832 # Protein_GI_number: 19551335 # Func_class: E Amino acid transport and metabolism # Function: Urea amidohydrolase (urease) beta subunit # Organism: Corynebacterium glutamicum # 1 135 1 131 162 135 53.0 4e-32 MKPGEYVLADAPVVCNPGREAVELSVTNRGDRPVQVGSHFHFAEANRALDFDRQAALGCR LDIPAGTAVRLEPGDETTVKLIPLGGDRVVYGFRDMVDGPLDPHEAAGFHAAPAAPATPA RHESAAGDAPSPLKERAGFDNETR >gi|289558527|gb|ADCD01000015.1| GENE 26 20968 - 22683 1580 571 aa, chain + ## HITS:1 COG:Cgl0086 KEGG:ns NR:ns ## COG: Cgl0086 COG0804 # Protein_GI_number: 19551336 # Func_class: E Amino acid transport and metabolism # Function: Urea amidohydrolase (urease) alpha subunit # Organism: Corynebacterium glutamicum # 1 571 1 570 570 836 71.0 0 MSFEISREQYASLYGPTTGDAIRLADTELFAVVEEDLTTPGEEAVFGGGKVIRDGMGQNS QLVRDVGVPDLVITNVVVIDWTGIYKADIAVRDAHIVAIGKAGNPHTMDGVDIVIGVATD VISGEGKILTAGGIDTHVHFISPDQIETALSSGLTTMIGGGTGPSESSKATTITPGEWNI HTMLRSFEHWPMNFGLLGKGHGSSISPMAEQIRAGAIGLKVHEDWGATPSSINTALQVAD EYDVQVAIHTDTLNESGFVEDTRAAIDGRVIHTFHTEGAGGGHAPDIIELAQYPNILPAS TNPTLPYTTNTVEEHVDMLMVAHHLNADLPEDVAFADSRIRKETIAAEDVLQDMGIFSMT SSDSQAMGRVGEVLIRTWQVADSMKRQRGPLPEDEGTAGDNHRIKRYVSKYTINPAIAHG IADSVGSVEVGKFADLVLWEPQFFGVKPDLVIKGGQMVYGVVGDPNGSIPTPQPRWYRRS FGAYGQAVHTSAITFMSEASIRAGVPRALGLQKTIRAVHGIRDLTKADMRHNGETPRLEV DPETYEVRVDGEPVTCEPQDVLPMAQRYFLF >gi|289558527|gb|ADCD01000015.1| GENE 27 22697 - 23188 409 163 aa, chain + ## HITS:1 COG:SA2085 KEGG:ns NR:ns ## COG: SA2085 COG2371 # Protein_GI_number: 15927871 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Urease accessory protein UreE # Organism: Staphylococcus aureus N315 # 1 163 1 149 150 125 47.0 2e-29 MIVTEILGNVHDDAGAALVGDRHREQVHLEGSALVKRIQRLRTDHGNEYGLRLPAGSPDL RDGDILTVDDEGERGNAVIVRVLSTDVLVISARSLREMAFVAHSLGNRHLPAQFFDADGP FGRDAMVVQYDHTVEDFLRAHDVPHERQERVMDVPFRHAEHTH >gi|289558527|gb|ADCD01000015.1| GENE 28 23250 - 23906 618 218 aa, chain + ## HITS:1 COG:SA2086 KEGG:ns NR:ns ## COG: SA2086 COG0830 # Protein_GI_number: 15927872 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Urease accessory protein UreF # Organism: Staphylococcus aureus N315 # 1 218 9 229 229 178 39.0 7e-45 MLQLTDSALPTGAFSHSLGLETYMSDGRVEGEEDFAAWLEMFVEQQLTFTDALAVRLVYA AEDFDAVANLDELVTAQALPAQIREAGRTMGRRLLRIGAPAYPGDWVRRYHEGVEAGTLD AHQALVWGVIAREIGVPVEEAVAAHLYASVMSLTQNAVRGIPLGQDAGQRVVRRAQEWVL RAVEVSRDLDPDDLGAIAPGLEIAQMRHERQRARMFMS >gi|289558527|gb|ADCD01000015.1| GENE 29 23989 - 24600 624 203 aa, chain + ## HITS:1 COG:Cgl0089 KEGG:ns NR:ns ## COG: Cgl0089 COG0378 # Protein_GI_number: 19551339 # Func_class: O Posttranslational modification, protein turnover, chaperones; K Transcription # Function: Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase # Organism: Corynebacterium glutamicum # 1 202 1 202 205 325 80.0 4e-89 MDPVIIGIGGPVGAGKTQLVERLTRAMSEEISMAAITNDIYTIEDAKILSRTSVLPEERI VGIETGGCPHTAIREDTSMNEAAIEQLKARFPDLQVIFVESGGDNLSATFSPELVDFSIY IIDVAQGEKIPRKAGQGMIKSDLFIVNKTDLAPYVGADLSVMESDSKVFRKDRPFAFTNL KTDEGLDVVMDWIRNDVLMADLG >gi|289558527|gb|ADCD01000015.1| GENE 30 24593 - 25447 550 284 aa, chain + ## HITS:1 COG:Cgl0090 KEGG:ns NR:ns ## COG: Cgl0090 COG0829 # Protein_GI_number: 19551340 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Urease accessory protein UreH # Organism: Corynebacterium glutamicum # 7 284 8 283 283 218 44.0 1e-56 MAEGLTGELRLRVAVRGGRSVAARQFHQGALRVLRPHYLDRSGQVSYTVINPGGAYFGAD RYGIEVDVEEDASLLLTTQSATKVYRTPQGPARQDMTLRLGPGAVLEYVPDQLIVYRGGS YLQDTRVVMDPSASVLLAEVITPGWSPTAEPFRYDRLGMRTEVTVDPGGDPRRLVVDQLR LHPAEGQGLTGMGMLEGHSHTGQLLVADRRLDADLVAELTEVVDASDTVSGITRAGTGRA HGVDCVSVRSLAASTGRITALHHALADLLRARWRDQSPLALRKY >gi|289558527|gb|ADCD01000015.1| GENE 31 25486 - 26397 729 303 aa, chain + ## HITS:1 COG:MT2923 KEGG:ns NR:ns ## COG: MT2923 COG3376 # Protein_GI_number: 15842397 # Func_class: P Inorganic ion transport and metabolism # Function: High-affinity nickel permease # Organism: Mycobacterium tuberculosis CDC1551 # 24 303 27 319 372 158 38.0 1e-38 MSHAVPTAVTPHRTATPERPLRVRVAAVYAVVVALHVLAAALLLGGYGGASPSPVLLAAL VTAYGAGLKHSYDWDHISAIDNSTRKFVSEGGSPAGVGLAFSLGHSLVVTLAAVLAVAGA GLMQGAFADGSPANRVLGLIGTGVSGGYLLLLGVYNGVSALRLRRASAVRRPGPAEEPTG LVTRLLRAPLRRVRSPRDIFVIGFLFGLGFDTATTIGLLLLAVSVSAAGIPLVTLLALPV AFTAAMTLCDTTNGLGMMRLYSSALQQSERRRRFNLVVTSVSAVSALFIAVLTLGAFVHE LLG Prediction of potential genes in microbial genomes Time: Thu May 26 06:55:41 2011 Seq name: gi|289558510|gb|ADCD01000016.1| Micrococcus luteus SK58 ctg1119142780326, whole genome shotgun sequence Length of sequence - 11721 bp Number of predicted genes - 16, with homology - 16 Number of transcription units - 8, operones - 4 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 68 - 409 208 ## COG1002 Type II restriction enzyme, methylase subunits 2 2 Op 1 . - CDS 470 - 1513 175 ## COG2856 Predicted Zn peptidase 3 2 Op 2 . - CDS 1570 - 2367 499 ## Noca_3571 hypothetical protein 4 2 Op 3 . - CDS 2395 - 2835 156 ## ACP_3270 hypothetical protein 5 3 Op 1 . - CDS 3033 - 3545 302 ## Mlut_20770 DNA-binding protein, excisionase family 6 3 Op 2 . - CDS 3600 - 4028 315 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs 7 4 Op 1 . + CDS 4479 - 4985 248 ## Lxx00710 hypothetical protein 8 4 Op 2 . + CDS 4991 - 5728 380 ## COG0588 Phosphoglycerate mutase 1 9 4 Op 3 . + CDS 5749 - 6228 156 ## CMM_0259 putative membrane protein involved in chromosome condensation 10 4 Op 4 . + CDS 6225 - 6596 271 ## COG0239 Integral membrane protein possibly involved in chromosome condensation 11 4 Op 5 . + CDS 6644 - 7129 361 ## COG0221 Inorganic pyrophosphatase 12 5 Tu 1 . + CDS 7272 - 8606 1081 ## COG0148 Enolase - Term 8498 - 8555 1.0 13 6 Tu 1 . - CDS 8591 - 9589 368 ## COG0583 Transcriptional regulator 14 7 Op 1 . + CDS 9588 - 10745 807 ## COG1275 Tellurite resistance protein and related permeases 15 7 Op 2 . + CDS 10742 - 11326 225 ## Cpha266_2236 uracil-DNA glycosylase superfamily protein 16 8 Tu 1 . + CDS 11467 - 11719 147 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs Predicted protein(s) >gi|289558510|gb|ADCD01000016.1| GENE 1 68 - 409 208 113 aa, chain + ## HITS:1 COG:BS_yeeA KEGG:ns NR:ns ## COG: BS_yeeA COG1002 # Protein_GI_number: 16077744 # Func_class: V Defense mechanisms # Function: Type II restriction enzyme, methylase subunits # Organism: Bacillus subtilis # 1 112 768 877 879 67 32.0 7e-12 MFITWMKTVGGRMKSDLSFSSTITWNGFPLPALTNKDRASLAKAGQNVLEARALHPERSL AQHYAPLSMDPVLVRAHDGLDTVMDKIMGAPRRCRTELERQELLFTRYAELTS >gi|289558510|gb|ADCD01000016.1| GENE 2 470 - 1513 175 347 aa, chain - ## HITS:1 COG:NMB2012_2 KEGG:ns NR:ns ## COG: NMB2012_2 COG2856 # Protein_GI_number: 15677837 # Func_class: E Amino acid transport and metabolism # Function: Predicted Zn peptidase # Organism: Neisseria meningitidis MC58 # 116 274 2 169 248 97 35.0 4e-20 MARRLRRKTKATLAREVGVTPTAIGQFEKNLSKPTQGVLARLCLQLGLPREFFGAGRPLA LLPASGAHFRSLRSTSAASREQALAYGELCLELVDLVGAYVDLPSVSLPELELPEELTDE AIVEAARLTRAAWGIAPGPVPSVVQALEAHGIIALRLPTETDAAVDAFSTYSGARPLVFL SPTKDDKARSRFDAAHELGHLVLHPDTEPGSKLVEQQAHQFAAEFLMPRDEIVEDLPRRI NWPAFHELKRHWGVSLRALVYRAHSLGRLSEASYRRANQQLSVWGHPEPGPLGPAESPQV LGIARQLITDGGYDFEAIMAAGRIAPEVTEAVMDAASTVRPKLQFVV >gi|289558510|gb|ADCD01000016.1| GENE 3 1570 - 2367 499 265 aa, chain - ## HITS:1 COG:no KEGG:Noca_3571 NR:ns ## KEGG: Noca_3571 # Name: not_defined # Def: hypothetical protein # Organism: Nocardioides_JS614 # Pathway: not_defined # 20 265 1 248 249 179 42.0 9e-44 MIIGASLLDLSRRPCFTVCVDRAEEAAQGALHAITIACTESGLTDALRGLVQEVYSINLA RYEPDELGDTARSLGFQGHENMTERALRRFRHDDRERADTHWSIDGLHVATPRNVLTFEL AGASFLTMKVPPAQRRTPDWEGGIDWRQKSNARLAFATENSEVLKHRTPATGMVPLFSFS GAPGIVRKFMFLWAGEASTGLTAGWLAVPVLGERPFLAHQRLWWDTDLDTQATPTPMADR GPNFDERPAAALSMALKRRPQEGQA >gi|289558510|gb|ADCD01000016.1| GENE 4 2395 - 2835 156 146 aa, chain - ## HITS:1 COG:no KEGG:ACP_3270 NR:ns ## KEGG: ACP_3270 # Name: not_defined # Def: hypothetical protein # Organism: A.capsulatum # Pathway: not_defined # 1 106 66 171 190 109 51.0 3e-23 MNEAFDDACVEGWEELLSAISLPDENDRHVVAAAIQGRADLIVTANLKDFPTEVLGRFNL EAQHPDEFFVNQLDLDPAEVMRSLQVQASATRNPALTVADILASLERCDAWRFAEAARAQ TWRLESSQVGGGGVAGGVAPLSSADR >gi|289558510|gb|ADCD01000016.1| GENE 5 3033 - 3545 302 170 aa, chain - ## HITS:1 COG:no KEGG:Mlut_20770 NR:ns ## KEGG: Mlut_20770 # Name: not_defined # Def: DNA-binding protein, excisionase family # Organism: M.luteus # Pathway: not_defined # 1 168 1 168 170 236 78.0 3e-61 MTTTLNDKHTVMPPTDLEEMLDLSRFLGGLTQPAALLGPDGQTVPLPLEAFNVLRDVVEA MRVGKAITVAPVDQMLTTQEAANFLGISRPTLVKLLESGQLPYELPSGGRHRRLRLQDVV EYQERKRRDRRAALQELAGSASEAGLYAEDADRYRDALRQARRDLGQEAE >gi|289558510|gb|ADCD01000016.1| GENE 6 3600 - 4028 315 142 aa, chain - ## HITS:1 COG:Cgl1671 KEGG:ns NR:ns ## COG: Cgl1671 COG1961 # Protein_GI_number: 19552921 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Corynebacterium glutamicum # 1 134 46 180 184 115 49.0 2e-26 MRYVREGDLVKVASMDRLGRDTRDLYAIVDELTGKGCAVQFVSERITVDKSGTSPVDGLM LGILAGFAEFERRRIKERQAEGIALAKARGKYVQAPKLSDTDVEQARVMIQMGIPKAEVA RTFGVSRQTLYTSLARGVETGG >gi|289558510|gb|ADCD01000016.1| GENE 7 4479 - 4985 248 168 aa, chain + ## HITS:1 COG:no KEGG:Lxx00710 NR:ns ## KEGG: Lxx00710 # Name: not_defined # Def: hypothetical protein # Organism: L.xyli # Pathway: not_defined # 4 167 12 177 180 83 37.0 3e-15 MVESNTAGVVVVGVQSGQGHDVVGVAAAVAERFSARLVCVVVDPALLSAGVRADGSEIIE PIDPDTADSDPQQLPDEDMRVIRDLAAARSVDVDFVSRVGDPSHALAAVAEERDAVMIVV GSQAGRRRIAELLTGSVAAHLTHQQHRPILVVPHDPVGATVLLPSEAP >gi|289558510|gb|ADCD01000016.1| GENE 8 4991 - 5728 380 245 aa, chain + ## HITS:1 COG:Cgl0397 KEGG:ns NR:ns ## COG: Cgl0397 COG0588 # Protein_GI_number: 19551647 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoglycerate mutase 1 # Organism: Corynebacterium glutamicum # 2 229 6 232 248 174 42.0 1e-43 MLTLLRHGESTANEAGTFTGLLDVPLTHRGERQASAAGQLLRSNHITPDVVVTSTLRRAV RTAELVCDALGTQLPTEAVWQLNERNYGALTGMTKTDARRMLGDDEYVRLRRSRTGTPPP MSLHLWEELRSSSALRGLPDGALRRTEALSDVIKRVRPVLHDRLLPMVRSGRSVLVVAHG NSLRALCACIDDLTDPELEQLNLPTGQPVQYHLAPTGALVPRGGAFLDPVAAQHAAALVA AEGGT >gi|289558510|gb|ADCD01000016.1| GENE 9 5749 - 6228 156 159 aa, chain + ## HITS:1 COG:no KEGG:CMM_0259 NR:ns ## KEGG: CMM_0259 # Name: crcB1 # Def: putative membrane protein involved in chromosome condensation # Organism: C.michiganensis # Pathway: Metabolic pathways [PATH:cmi01100] # 1 126 11 135 174 110 54.0 1e-23 MPDDQLPPDPDVDVSDPATTMRPVHLRWRYVGLVAVGGAGGTALRDVISSVLPADGGVSW SIFWINITGALALGVLLEALAHRGPDAGRRRVLRLLLGTGVLGGFTTYSTLAESTAALFL DGHGLAGTGYALLTVLSGAIATACGLVVAGWFRPRTEEA >gi|289558510|gb|ADCD01000016.1| GENE 10 6225 - 6596 271 123 aa, chain + ## HITS:1 COG:VC0060 KEGG:ns NR:ns ## COG: VC0060 COG0239 # Protein_GI_number: 15640092 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Integral membrane protein possibly involved in chromosome condensation # Organism: Vibrio cholerae # 1 116 1 119 126 57 34.0 7e-09 MNAALIVVVALGGGAGAAGRFLLDGLINTGREFRLPVGTLTINITGSLLLGIIVGAATHL GAVPVAVLGTGVMGGYTTFSTASFETVRLARSGRITAAAINGLGMLVVSVAAATAGILLG GTL >gi|289558510|gb|ADCD01000016.1| GENE 11 6644 - 7129 361 161 aa, chain + ## HITS:1 COG:MT3730 KEGG:ns NR:ns ## COG: MT3730 COG0221 # Protein_GI_number: 15843240 # Func_class: C Energy production and conversion # Function: Inorganic pyrophosphatase # Organism: Mycobacterium tuberculosis CDC1551 # 1 151 1 151 162 202 64.0 3e-52 MLFDVTIEIPRGSGNKYEVDHTTGRIRLDRAVFTSMVFPQDYGSIDNTLGDDGDPLDALV LLPRPTFPGVVITVRPVGMLRMVDENGGDDKILTVPAGDDRFAQLRDITDVPEHTLAEIE HFFAHYKEIEHGKHVTTNGWADRAAAEAVIRTAQNAHTRHP >gi|289558510|gb|ADCD01000016.1| GENE 12 7272 - 8606 1081 444 aa, chain + ## HITS:1 COG:PH1942 KEGG:ns NR:ns ## COG: PH1942 COG0148 # Protein_GI_number: 14591684 # Func_class: G Carbohydrate transport and metabolism # Function: Enolase # Organism: Pyrococcus horikoshii # 23 435 2 411 428 350 47.0 4e-96 MNDYISGIHHHGAHQGEYVTHHDHPVTIDAVHGARILDSRGYPTVRVSLELDDGRTVTGD APAGASTGAHEAVELRDGGSAFGGRDVTQALHLIDTDISGLLTGRSWSAIGQIDAALAEL DGTTGYRRLGANSVVATSIAASRALAHAADLPLWQWIAEITGSTPRMPVPHFNVLNGGAH AANELDFQEFMIAPVNAGSMADAVRIGADVYHALAALVRDRFGSLGLGDEGGFAPSIAAP EEALDLLVDAIRTAGYEPGVDQVAIALDPAANEFSQGDGSYRVLNDSLDRDGLVDYYRHL IDTYPIRSIEDAFAEDDHEGFRRMQAALGDRIQIVGDDLYVTDPQRIRDGGEQQLTNAAL IKPNQIGTVSQTLGAIATAKSIGMASMVSHRSGETTDTFIADLVVGTGTGQIKSGAPGRG ERVAKYNRLTEIAEQHPELPYGLI >gi|289558510|gb|ADCD01000016.1| GENE 13 8591 - 9589 368 332 aa, chain - ## HITS:1 COG:MT2340 KEGG:ns NR:ns ## COG: MT2340 COG0583 # Protein_GI_number: 15841773 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Mycobacterium tuberculosis CDC1551 # 30 319 3 302 312 150 42.0 4e-36 MHPSCACAPWFGNGGLVGRAQWLLVALRRLTDRILDLDTLEVLVRVAETGSLTRAAEVLG VTQQAVSARLRAAEQATGQPLAHRTASGTALTDAGRVVLGLAVPVLEASRRLEAGVAALR EPAGSLVIAASQTIAELLLPGWLLTHRAATPDASVRLIAGNSADVTDLVRSGAADVGFTE TPAAPIGLSSLVVDEDELVVVVAPHHPWASASAITSDDLAETPLLLREEGSGTRSTVEAW LDDAGLTLVPPAAVLETTGIIRANARAGIAPAVMSLRTVDTDLEDGALVRALLLGPPLIR PLRAIWSGRPGPAVTAFLDTARSSSTGGQISP >gi|289558510|gb|ADCD01000016.1| GENE 14 9588 - 10745 807 385 aa, chain + ## HITS:1 COG:PH0884 KEGG:ns NR:ns ## COG: PH0884 COG1275 # Protein_GI_number: 14590741 # Func_class: P Inorganic ion transport and metabolism # Function: Tellurite resistance protein and related permeases # Organism: Pyrococcus horikoshii # 32 369 5 324 330 137 29.0 5e-32 MSAHLAHAPAASEHGVRDRRLFRELERPGLIVSNLTPNWFASIMGTGIVAVAAASLPLQF PGLRTAATVVWAIAAVLLVALTIATVLHWVRYRSTAAKHHLNPVISHFYGAPPMAFLTVG AGTILLGKDWIGLPAAVTVDWVLWTIGTIGGLLTAVLVPYLAFTRHENTPESAFGGWLMP IVPPMVSASTGALLLPYAPAGQARETLLWSCYGFFGLSLITSLVVITLIWNRLAQHKVGA AGMVPTLWIVLGPVGQSITAVNLLASNAPAVVDASTAHALLVVALVYGFAMLGFALLWTV IALAITIRTAREHLLFSLTWWSFTFPVGTCVTGLNGLALHSGLTVVAVLAVVYYVGLVAA WITVAVRTFHGSVIRGTLLAPPQPA >gi|289558510|gb|ADCD01000016.1| GENE 15 10742 - 11326 225 194 aa, chain + ## HITS:1 COG:no KEGG:Cpha266_2236 NR:ns ## KEGG: Cpha266_2236 # Name: not_defined # Def: uracil-DNA glycosylase superfamily protein # Organism: C.phaeobacteroides # Pathway: not_defined # 35 168 48 180 326 77 35.0 3e-13 MSTPDELADEVADVRSLNALAEAWRTAPDGSRRFVPNFDPRSGGTSSRVLVLMQSPGPQT IAAAHTAICSEDNPGPTAAAFRAARIESGLARNDYLRWNLIPWEILGRVRPVDIDEGRHA LETLLKVLPVLDAIVTYGTAALNGVMRHLTLDEHPRLVPVIAAPHPSPANGRHRAEQQRR SVQALRLAALTHRL >gi|289558510|gb|ADCD01000016.1| GENE 16 11467 - 11719 147 84 aa, chain + ## HITS:1 COG:XF2028 KEGG:ns NR:ns ## COG: XF2028 COG1961 # Protein_GI_number: 15838622 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Xylella fastidiosa 9a5c # 4 77 2 75 185 97 63.0 5e-21 MGHLLGYARVSTTDQDASLQIDALGAAGCYRVFVDTMSGSLQHRPELDKLLDQLRPGDTL VVWRLDRLGRSIRHLIDQLHALAE Prediction of potential genes in microbial genomes Time: Thu May 26 06:56:12 2011 Seq name: gi|289558483|gb|ADCD01000017.1| Micrococcus luteus SK58 ctg1119142780316, whole genome shotgun sequence Length of sequence - 33904 bp Number of predicted genes - 24, with homology - 24 Number of transcription units - 11, operones - 4 average op.length - 4.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 2 - 416 98 ## COG0611 Thiamine monophosphate kinase 2 1 Op 2 . - CDS 413 - 2173 1454 ## Mlut_08700 hypothetical protein 3 1 Op 3 . - CDS 2170 - 3987 1498 ## Mlut_08690 hypothetical protein - TRNA 4089 - 4164 56.1 # Glu CTC 0 0 - TRNA 4294 - 4366 55.5 # Glu CTC 0 0 - TRNA 4419 - 4493 55.8 # Gln CTG 0 0 4 2 Op 1 . - CDS 4613 - 5377 545 ## COG1011 Predicted hydrolase (HAD superfamily) 5 2 Op 2 2/0.000 - CDS 5374 - 6951 1569 ## COG0008 Glutamyl- and glutaminyl-tRNA synthetases 6 2 Op 3 . - CDS 7001 - 7795 754 ## COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) 7 3 Tu 1 . - CDS 8238 - 10337 1988 ## COG1966 Carbon starvation protein, predicted membrane protein 8 4 Op 1 . - CDS 10525 - 11727 1108 ## COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase 9 4 Op 2 . - CDS 11762 - 12838 898 ## COG0473 Isocitrate/isopropylmalate dehydrogenase 10 4 Op 3 . - CDS 12910 - 14535 1347 ## COG0143 Methionyl-tRNA synthetase 11 4 Op 4 . - CDS 14528 - 15394 493 ## Mlut_08570 hypothetical protein 12 4 Op 5 1/0.000 - CDS 15450 - 16877 1238 ## COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases 13 4 Op 6 15/0.000 - CDS 17194 - 18225 1078 ## COG0059 Ketol-acid reductoisomerase 14 4 Op 7 32/0.000 - CDS 18261 - 18770 444 ## COG0440 Acetolactate synthase, small (regulatory) subunit 15 4 Op 8 . - CDS 18783 - 20684 1592 ## COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] 16 5 Tu 1 . - CDS 20976 - 22130 572 ## COG1820 N-acetylglucosamine-6-phosphate deacetylase 17 6 Tu 1 . - CDS 22240 - 22425 158 ## gi|289704786|ref|ZP_06501207.1| glucosamine-6-phosphate deaminase family protein 18 7 Tu 1 . - CDS 22529 - 24256 1674 ## COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase 19 8 Tu 1 . + CDS 24325 - 24909 488 ## Mlut_08490 hypothetical protein + Term 25064 - 25101 10.1 + TRNA 24977 - 25052 84.1 # Lys CTT 0 0 + Prom 24979 - 25038 79.2 20 9 Tu 1 . + CDS 25136 - 25624 505 ## COG1225 Peroxiredoxin + TRNA 25690 - 25770 68.8 # Leu TAG 0 0 + Prom 25692 - 25751 80.3 21 10 Op 1 . + CDS 25819 - 27483 1238 ## COG0747 ABC-type dipeptide transport system, periplasmic component 22 10 Op 2 . + CDS 27646 - 29073 1455 ## COG0579 Predicted dehydrogenase 23 10 Op 3 . + CDS 29081 - 32332 2591 ## COG0841 Cation/multidrug efflux pump 24 11 Tu 1 . - CDS 32379 - 33902 1165 ## COG0419 ATPase involved in DNA repair Predicted protein(s) >gi|289558483|gb|ADCD01000017.1| GENE 1 2 - 416 98 138 aa, chain - ## HITS:1 COG:slr1787 KEGG:ns NR:ns ## COG: slr1787 COG0611 # Protein_GI_number: 16329394 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine monophosphate kinase # Organism: Synechocystis # 13 136 35 143 364 63 36.0 8e-11 MTVRDPAAAAGATVGDLTESELLEVVLTGLAPAVRDGHWPAGTVAPGDDAALVPAPRGGT LISTDAMGEGTDFLHRWPAGPRTRGYDAGWKAVAQNLSDVNAMGGTASALVTALTLPPTT PVAWVRSFAAGIVGAVRH >gi|289558483|gb|ADCD01000017.1| GENE 2 413 - 2173 1454 586 aa, chain - ## HITS:1 COG:no KEGG:Mlut_08700 NR:ns ## KEGG: Mlut_08700 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 586 1 586 586 843 98.0 0 MSRRDTPALAPRLDALGEAAELAAGRLPEDVVAGADAVVRAAGERQALSAEHTVVGFFGA TGSGKSSLFNALTGRDLARVAATRPTTSEPLAAVWGVGRGQGLDSDAEHGDGTGEGGGAA ALLDWLGVRRRHLLDEAPVLDDGRPGFLGLGRRDGADATGLILLDLPDIDSVERGNREIT SRLAGHVDVLVWVVDPEKYADAVLHREFLATMGSHAAVTLVLLNQVDRLSVRDRDVVLAS LRRMLSGHGLGDVRVLPVSARTGEGLEEVGRQVAAIVAQRGAAAERLGADVAARAADLAA ASGEGEPAGVGPGDEQRLGRELAVAGGVPAVVRAVEGSYRLRSAKRTSWPVLRWMHSFRA DPLRRLHLMPERTAPRRDRDEVARDPALHRTSLPERSGTQRAVVDGAVRTLAAAAGAGAS EPWAAAIRRAGRVHAEELPGAVDQAIAATDLGAGRGSWWHPVLDVLQWLALLTAVVGAGW LGVLALAGYLQFPLPPAPTVEGFPLPTLLLVGGLALGVLLALLAIPLTRWTAAARGRRAR RRLEEATTDVGRRLVVDPVRAEVDRFHAFRDALARASGVSVWRGRR >gi|289558483|gb|ADCD01000017.1| GENE 3 2170 - 3987 1498 605 aa, chain - ## HITS:1 COG:no KEGG:Mlut_08690 NR:ns ## KEGG: Mlut_08690 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 4 605 1 602 602 973 97.0 0 MAHVPHTDQNAPDLGVDTAVRRVREHLAALELPFETVTAGQDRAERERTLHQIDDYVMPR LDSLDAPLLAVVGGSTGAGKSTLVNALVGHEVSRSSALRPTTRQPLLLHNPADAHWFTGP RVLPDLARVSVHRDAAAGPVEPDQSAMDTVALVAEPALPSGIALVDAPDIDSVADQNRAL ARQLLEAADLWIFTTTAHRYADAVPWQLLDEAAARDITVAVVLGRVPEGAAEDITPDLRR MLTERGLADARIHVIPETRFDERGLLPQEHVAGLRAWLETLAADAQARGAVARRTVDGVL GQLAARVADLARAEEEQRHAADLLARIVGDSTDQAVGRVREATSDGTLLRGEVLSRWQDF VGTGEFFRGVETTIGRLRDRLGALVRGRPAPPEEVETALETGLHAVMVEAAAAAAEQIER RWASEPAGRALVAGRDLGALTPDASARAADVVRDWQSDVLALIQEEGAGKRTRARLAATG VNGAAVALMIISFASTGGLAGIEVGIAGGAAVVGQKLLESIFGEDAVRRMARRADELLER RVRAFLETVLADRFLPLLHLEREPQATEELRALVPVLRRGVAAGVDGPTGPEHAPSAAEA GEEPR >gi|289558483|gb|ADCD01000017.1| GENE 4 4613 - 5377 545 254 aa, chain - ## HITS:1 COG:TM1177 KEGG:ns NR:ns ## COG: TM1177 COG1011 # Protein_GI_number: 15643933 # Func_class: R General function prediction only # Function: Predicted hydrolase (HAD superfamily) # Organism: Thermotoga maritima # 13 226 4 206 225 71 26.0 1e-12 MSRGAPAPPAWDAVLFDLDDTLLDLRSAQHAAFDATVRRQWAGAADVDPAVLAEATEAFA SDAGGHYGRYVAGELTFEEQRLARVADALRALGVPEDAATPLDGLWTTDYEEVVRGHWAL FPATADVLAEVRGTGRGVGIVTNNVETYQRGKADALGLEWVEVLIGSDTAGAPKPDPAPF LAGCSRLGADPGRTLMVGDSLRHDVEGARSAGLVPVWMSPDAPAHGGAEEPLWDEEHACW RMRAIGGLRTWLEA >gi|289558483|gb|ADCD01000017.1| GENE 5 5374 - 6951 1569 525 aa, chain - ## HITS:1 COG:Cgl1263 KEGG:ns NR:ns ## COG: Cgl1263 COG0008 # Protein_GI_number: 19552513 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glutamyl- and glutaminyl-tRNA synthetases # Organism: Corynebacterium glutamicum # 26 508 2 480 493 604 63.0 1e-172 MTDATAPVSENAPAPFADVPQVDAETPVRVRFAPSPTGTPHVGLIRTVLFNWGWARHTGG TLVFRIEDTDAKRDSEESYQQLLEAMRWLGIDWDEGVEVGGPHEPYRQSQRGQIYADVIE KLKAGGHIYPSYSSPEETEARHRAAGRDPKLGYDGHDRDLTDEQIAAFEAEGRAPVWRLR MPDEDITFTDLVRGEITFKAGSVPDFVVVRADGSPLYTLVNPVDDALMGITHVLRGEDLL SSTPRQIALYRALHAIGVARYMPVFGHLPYVMGEGNKKLSKRDPQANLFLHRDNGFIPEG LLNYLGLLGWSLSADEDIFTPQQFVEHFDVHKVLANPARFDEKKAIAINGTHVRMLDVAD FRDRLVPYLHAAGLVGEHLTEREMEVLTAAAPLVQERVQLLGEAVEMLAFLFTADRDVRT AEGALKGMPADLGAAVAAAREALAALPEDEFTTERIEAALRAALIDGLGLKPRQAFGPVR VAVTGRKVSPPLFESLEILGRDSALARLDRFAAEQGRDQDPPADA >gi|289558483|gb|ADCD01000017.1| GENE 6 7001 - 7795 754 264 aa, chain - ## HITS:1 COG:MT3071 KEGG:ns NR:ns ## COG: MT3071 COG0179 # Protein_GI_number: 15842549 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) # Organism: Mycobacterium tuberculosis CDC1551 # 45 258 17 229 239 206 49.0 3e-53 MRIARFVDQAEPTYGIVEGPADADPSELSITALQGDPFFHGIQPTGTTHRLEDVRLVAPI IPRSKIVGVGRNWADHAKELGNEVPASPQFFLKPNTAVVGPNEPVTLPSWSDEVSYEAEL AVVIGTICKDVPVSRVDDVVFGYTVGNDLTARDAQRTDLQWARAKGFDGACPLGPWIETE LDVEPAGGLRITSRLDGETRQDGMTADMVFGVRELVAAASEMFTLLPGDVILTGTPGGVG TVQEGQRVEAEVEGIGVLATVFRR >gi|289558483|gb|ADCD01000017.1| GENE 7 8238 - 10337 1988 699 aa, chain - ## HITS:1 COG:Cgl0635 KEGG:ns NR:ns ## COG: Cgl0635 COG1966 # Protein_GI_number: 19551885 # Func_class: T Signal transduction mechanisms # Function: Carbon starvation protein, predicted membrane protein # Organism: Corynebacterium glutamicum # 2 687 54 745 759 776 63.0 0 MLALHRGETINAIWFVFAAVATFAIGYRFYSKYVERMIVHPDDTRATPAEYRADGRDYVA TDRRVLYGHHFAAIAGAGPLVGPVLAAQMGYLPGTIWIIVGVILAGAVQDYLVLFFSMRR GGRSLGQMARDELGRVGGTAAIVATLLIMVIITAILALVVVNALGESPWGVFSVAMTIPI ALFMGVYLRWIRPGRITEISVIGFVLLLAAIIGGGWVAGTEWGAALFTLDRTTIAWAVII YGFVAAVLPVWLLLAPRDYLSTFMKIGVIAGLALAIVVVQPRIGTPAFSEFASGQTGPVW PGSLFPFLFVTIACGALSGFHALIASGTTPKMVEKERQTRFIGYGGMLMEAFVAIMALVA AVSLDRGIYFAMNSPAALTGGTPETAADFVMGLGLAGVNLAPGDLTHLADLVGEETVVSR TGGAPTLAVGLAHIMGQLVGGDALMGFWYHFAIMFEALFILTAVDAGTRVARFMLQDSLG NVVPRFKDTSWRVGAWVCTAIMVAAWGAVLIMGVTDPLGGINTLFPLFGIANQLLAAIAL AVVLTIVARRRDFRGLWIVALPLAFITVVTTVASFQKIFSSIPAVGYWAQHRAFQDALAA GKTSFGAAKSVPAMEAVVRNTAIQGTLSIVFLVLALIVITTSVLATVRAFRGTEVIDHQD PYMPSQRFAPAGLFATAEEKELQRQWDALPAEKQPVRGH >gi|289558483|gb|ADCD01000017.1| GENE 8 10525 - 11727 1108 400 aa, chain - ## HITS:1 COG:XF1999 KEGG:ns NR:ns ## COG: XF1999 COG0115 # Protein_GI_number: 15838593 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase # Organism: Xylella fastidiosa 9a5c # 49 399 11 360 362 421 62.0 1e-117 MGRRPVACATPGVVAPTRRARHRSRPHPPPVTRSDPTVSETVFTRQPHLSPMSDQQRVEI LQDPGFGNVFTDHMVSIDWTWDEDGGAWHDARVEPYGPLSLEPSAAVLHYGQEIFEGLKA YRHEDGSVWTFRPEANAARLNRSARRLALPELPEELFLGSLRAQLEADRAWVPTGPGQSL YLRPFMFASEAFLGVRPARQVRYMVIASPAGNYFGGELKPVTIWVSRDYTRAGKGGMGAA KTGGNYAASLLPQLQAAAKGADQVVFLDQYNDDAIEELGGMNVFFVHADGRLVTPALTGT ILEGVTRSSILQLGRDMGLTVEERRVTLAEWAEGVRSGEITEVFACGTAAVVTPIGRLLD GDDVIESAGGTDVTLKIRAELEGIQTGRVEDRHGWLHRLV >gi|289558483|gb|ADCD01000017.1| GENE 9 11762 - 12838 898 358 aa, chain - ## HITS:1 COG:Cgl1256 KEGG:ns NR:ns ## COG: Cgl1256 COG0473 # Protein_GI_number: 19552506 # Func_class: C Energy production and conversion; E Amino acid transport and metabolism # Function: Isocitrate/isopropylmalate dehydrogenase # Organism: Corynebacterium glutamicum # 12 355 1 335 340 384 63.0 1e-106 MTETTRSSADPLDIAVIGGDGIGPEVTDQAAAVLQAALRAEGRPEARLTPYPLGAEHWLE TGEALTDEVLQSLRSHDAILFGAVGAAPGDERIPSGLIERGMLLKLRFALDHGVNLRPAT LLPGAVSPLAAPGEIDFTVVREGTEGPYVGNGGAIRVDTPHEIATEVSVNTAFGVRRVVE DAFRRADAGERKRLTLVHKHNVLVHAGHLWRRTVESVAADFPAVTWDYMHVDAAMIFLAT DPARFDVIVTDNLFGDIITDLAAAVTGGIGLAASGNINVEGTAPSMFEPVHGSAPDIAGQ GVADPVAAILSAALLLEHVGEAGAASRVRTAVWAHLKDRVDGARGTTAEVGADVVARV >gi|289558483|gb|ADCD01000017.1| GENE 10 12910 - 14535 1347 541 aa, chain - ## HITS:1 COG:ML0238 KEGG:ns NR:ns ## COG: ML0238 COG0143 # Protein_GI_number: 15827034 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA synthetase # Organism: Mycobacterium leprae # 7 540 3 516 537 640 60.0 0 MTDARAPYYLTTAISYPNGEPHIGHAYEYIASDAMARFQRLDGRDVRFLTGTDEHGQKME QTAQQQGVSALELATRNAAVFREMDDDVLDISYDRFIRTTDTDHAEAVREIWRRMEANGD IYLGSYAGWYSVRDERYFGEDETEVGQDGVRRAVETGTEVTWTEEESYFFRLSKYQQPLL DHYREHPDFAAPRYRFNEVIRFVEAGLEDLSISRTSFQWGIDLPAPADPDAADADRRADH VTYVWVDALTNYLTGAGWPAEDPEAFARYWPADLHVIGKDISRFHCIFWPAFLMSAGLEL PRRVMIHGFLNNNGAKMSKSLGNVVHPREWVARYGLDAIRFFLLREFPFGADGSYSHEAV VSRKNADLANNLGNLAQRSLSMVAKNCGAAVPEPGELTDADRAVLAQVDALLERSRSAYA VQDFHDALEETWRVLGEVNAYFADQAPWVLRKTDEPRMRTVLYVTLQAVRRVALLAQPVM PDSASRLLDLLGVPAEGDAGRTGASGTGPRSFAAFHEDLVPGTPLPAPQPVFPRHEEPAE D >gi|289558483|gb|ADCD01000017.1| GENE 11 14528 - 15394 493 288 aa, chain - ## HITS:1 COG:no KEGG:Mlut_08570 NR:ns ## KEGG: Mlut_08570 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 31 288 1 258 258 405 94.0 1e-112 MVSMSRPPEPRPAPAPTARAAAARPATPPGVQGRWARRAAGGLIGVSVLLAAWSFALPFV FGLGPRQVPWWREVFDVNHEANLTAWWSSGLLLLGAAGFTTVGLVRRALGADRRRSLLAW LTPAALLAAMSLDESTQIHEQAGQLWEALPFAGENPLPAFQWLILGAPAAIVVLGLLALC TVALPRRTRALTVAGGAVFFFGAIVLEAVPLVFGIGRSTLAYHVATHAEELTEMIGASVL VVAPWAHLHLRPAPGHLQVTADGVPDVGADDVVLGAGPGPAGRLDDCD >gi|289558483|gb|ADCD01000017.1| GENE 12 15450 - 16877 1238 475 aa, chain - ## HITS:1 COG:ML1692 KEGG:ns NR:ns ## COG: ML1692 COG0111 # Protein_GI_number: 15827900 # Func_class: H Coenzyme transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoglycerate dehydrogenase and related dehydrogenases # Organism: Mycobacterium leprae # 1 474 55 528 528 397 52.0 1e-110 MDAEAIAAAPQLKVIARAGVGLDNVDVPAATEAGVMVVNAPTSNIISAAELTCGHILAAA RNIAAAHGSLKAGEWKRSKYTGVELYGKRLGVIGLGRIGALVAERMKAFGMEILAYDPYV TTARAQQLGASLVELDELLERADVVTIHMPKTPETVGMIGDEQFARMKDTAIIVNVARGG LVDEDALARALEAGTIGGAGIDVFSSEPATDLAFFAHDSAVVTPHLGASTAEAQEKAGVA VAGSVRLALSGELVPDAVNVAGGAIHEDVRPGLPLAEKLGRVLTALVGEQSITAVEVEIA GEIAEHDVSAMRLAALKGVFTDIVSDQVSYVNAPVLAEQRGVECRLTTTAVSESYRNTVT VRAATAQGSQTAVTGTLTGPRQVQKLVGVDRHELEVPLADHLLVFAYQDRPGVIGVLGQA LGVQGVNIAGMDVSRDDEGAALAVLTLDGALSGDTAATLAAAIGAARAAEVDLSV >gi|289558483|gb|ADCD01000017.1| GENE 13 17194 - 18225 1078 343 aa, chain - ## HITS:1 COG:MT3081 KEGG:ns NR:ns ## COG: MT3081 COG0059 # Protein_GI_number: 15842559 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Ketol-acid reductoisomerase # Organism: Mycobacterium tuberculosis CDC1551 # 1 329 1 329 337 399 61.0 1e-111 MTVKKFYDDDADLSIIQGRTVAVIGYGSQGHAHALSLRDSGVDVRIGLAEGSRSRAKAEA EGLRVVDVATAAAEADLIMILTPDQVQADVYDQHIAGNLQEGDALFFAHGFNVRFGYIQA PEGVDVALVAPKGPGHVVRREFEAGRGVPALIAVEKDASGQAHALALSYAKAVGGTRAGV IETTFTEETETDLFGEQAVLCGGASQLVQYGFETLTEAGYQPEIAYFEVLHELKLIVDLM VEGGIAKQRWSISDTAEYGDYVSGPRVITPDVKENMKAVLADIQSGAFAQRFMDDQKAGA PEFKELRARGEAHPIEKTGRELRQMFSWLKDADDDYTEGTAAR >gi|289558483|gb|ADCD01000017.1| GENE 14 18261 - 18770 444 169 aa, chain - ## HITS:1 COG:MT3082 KEGG:ns NR:ns ## COG: MT3082 COG0440 # Protein_GI_number: 15842560 # Func_class: E Amino acid transport and metabolism # Function: Acetolactate synthase, small (regulatory) subunit # Organism: Mycobacterium tuberculosis CDC1551 # 4 162 6 164 168 184 62.0 9e-47 MERHTLSVLVEDVPGTLTRVAGLFARRAFNIHSLAVGVTEVEGLSRITVVVDADTDLLEQ VTKQLNKLINVIKVVELTPDSSVQRDHLLVKVRADAATRGQVVQAADLFRAHVVDVAPES LTLEATGTRDKLEAFLEMMEPYGVRELVRSGTLALARGPRSMTDRALAR >gi|289558483|gb|ADCD01000017.1| GENE 15 18783 - 20684 1592 633 aa, chain - ## HITS:1 COG:Rv3003c KEGG:ns NR:ns ## COG: Rv3003c COG0028 # Protein_GI_number: 15610140 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] # Organism: Mycobacterium tuberculosis H37Rv # 13 630 7 611 618 761 63.0 0 MSTTPRDARAAVPQVPTPASRPTETARVQERRPALRPEIVEPRVPGEGSRVEPTRMTGSE GIIRSLEELGVTDVFGLPGGAILPTYDPLMDSDRIRHILVRHEQGAGHAAQGYHLATGKV GVAIATSGPGATNLVTAIADAHMDSQAVVFITGQVSSAAIGTDAFQEADIVGITMPITKH SRLVTRPEDVPQALAEAFHIAATGRPGPVLVDVTKDAQQGEFEFAWPPRIDLPGYRPVLR GHPRQIREAARLIREARRPVLYVGGGVARGEAHEELRALAELTGAPVVTTLTARGVFPDS HPQHLGMPGMHGGVPAVAALQQADLLITLGARFDDRVTGHLPSFAPGARVIHADIDPAEI SKNRTADVPIVGHVKEIIPDLVAELATDTEALPDLADWWAVLRRLQDTYPMGWTETEDGL LAPQEVISRLSALSGPEATYVAGVGQHQMWASQFVAYERPRQWLNSAGLGTMGFAVPAAM GAQVGEPDRVVWAIDGDGCFQMTNQELATCVINRIPIKIAVINNSSLGMVRQWQTLFYDG RYSNTDLNTGHDTARVPDFVKLADAYGAAGLRCDRREDLDDTIRQALAIDDRPVIVDFVV SRDAMVWPMVPAGVSNDAIQVARGMTPDWDQED >gi|289558483|gb|ADCD01000017.1| GENE 16 20976 - 22130 572 384 aa, chain - ## HITS:1 COG:Rv3332 KEGG:ns NR:ns ## COG: Rv3332 COG1820 # Protein_GI_number: 15610468 # Func_class: G Carbohydrate transport and metabolism # Function: N-acetylglucosamine-6-phosphate deacetylase # Organism: Mycobacterium tuberculosis H37Rv # 1 374 3 380 383 238 47.0 2e-62 MLRADRVHDGERLGGPGWIALAEGRVVAVGTGDPPRTRGPVHDLGDGLLAPGCVDVHCHG GGGHAFESGAAAARAAAAAHARAGTTTVVASLVTDHVDALAAQLTALTPLCAEGVLAGVH LEGPWLSPRHRGAHRAASLRAPAPDDVARLVEVGAGHLAMVTLAPELPGALDAVRTLRAA GVLVAIGHTDASYEVTRAAIEAGARMATHLHNACRPAHHREPGPAVALLEDPRVGIETIV DGVHLHPATVRRVAREAGERWILVSDAMAAAGCGDGDFSLGPLRVRVHDGVARVVGADGA AGAIAGSTATVAGSVRSAVAAGVDLDAALRAATAAPADALGLPDVGRLRVGSRADAVVFG PELEVRGVLRHGTWVKAAAPAAAD >gi|289558483|gb|ADCD01000017.1| GENE 17 22240 - 22425 158 61 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|289704786|ref|ZP_06501207.1| ## NR: gi|289704786|ref|ZP_06501207.1| glucosamine-6-phosphate deaminase family protein [Micrococcus luteus SK58] # 1 61 1 61 61 99 100.0 6e-20 MEVVIPPDAAADEEALREAGGVDVQLHPPVTVLVDEAAAGRLELAGEYRHMGEAKPSWQG L >gi|289558483|gb|ADCD01000017.1| GENE 18 22529 - 24256 1674 575 aa, chain - ## HITS:1 COG:MT0199 KEGG:ns NR:ns ## COG: MT0199 COG0129 # Protein_GI_number: 15839568 # Func_class: E Amino acid transport and metabolism; G Carbohydrate transport and metabolism # Function: Dihydroxyacid dehydratase/phosphogluconate dehydratase # Organism: Mycobacterium tuberculosis CDC1551 # 1 575 1 575 575 818 76.0 0 MDSAASTPSTPSAAPDMKPRSRDVTDGMERTAARGMLRAVGMGDEDFGKPQIGIASSWNE ITPCNLSLDRLAQASKDGVHAAGGYPLEFGTVSVSDGISMGHEGMHFSLVSREVIADSVE TVMMAERLDGSVLLAGCDKSLPGMLMAAARLDLASVFVYAGSIMPGVARLTDGTERQVTI IDAFEAVGACARGLMSEEDLLRIEKSIAPGEGACGGMYTANTMASIGEALGMSLPGSAAA PSADRRRDAFARRSGEAVVNMLRQGITARDIMTKPAFENAIAVTMAFGGSTNAVLHLLAI AREAGVDLQLSDFNRVADRTPHIADLKPFGQYVMTDVDRIGGVPVVMKALLDEGLLHGDT LTVTGKTLAENLAALDPDPVDGRVIRTMDDALHPNGGIAILHGSLAPEGAVVKSAGFDAD VFEGTARVFDRERAAMDALEDGTIAAGDVVVIRYEGPKGGPGMREMLAITGAIKGAGLGK DVLLITDGRFSGGTTGLCIGHIAPEAAEGGPIGLVQDGDRIRVDIAGRTMDLLVDEAELA ARRESWKPVAPKFTTGVLGKYAKLVHSAAEGAYLG >gi|289558483|gb|ADCD01000017.1| GENE 19 24325 - 24909 488 194 aa, chain + ## HITS:1 COG:no KEGG:Mlut_08490 NR:ns ## KEGG: Mlut_08490 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 13 194 1 182 182 322 97.0 4e-87 MTRADGSAYVGVMDTPTLHRRLRRVFDARVFNHGDYNVVYGQPSGSSSPLVIGYRHQPLE MLLCPFDPTSTPDDHDRRTPGVAEDDPHGPVTEASADRADVVGVGLANVATVADTGSGYQ VETVTGFRTWFDVPEHTRVPVGDLTEDGTAELDQAEDATDFHAFMTAFMDELDRLYAAPE PDTTDVTPPDLHGI >gi|289558483|gb|ADCD01000017.1| GENE 20 25136 - 25624 505 162 aa, chain + ## HITS:1 COG:MT2597 KEGG:ns NR:ns ## COG: MT2597 COG1225 # Protein_GI_number: 15842053 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peroxiredoxin # Organism: Mycobacterium tuberculosis CDC1551 # 1 159 1 157 157 191 62.0 4e-49 MTDTTQHRLQPGDTAPAFTLQDQEGRPVSLRDSAGKHTIVYFYPAASTPGCTTEACDFRD SLASLTAAGYVVLGISPDPIGKIIRFAEQEGLTFPLLSDEDHAVAEAYGAWGEKKNYGRT SEGLIRSTIVVGPDGKVTHAQYNVKATGHVARLRRTLGLDEA >gi|289558483|gb|ADCD01000017.1| GENE 21 25819 - 27483 1238 554 aa, chain + ## HITS:1 COG:BH3644 KEGG:ns NR:ns ## COG: BH3644 COG0747 # Protein_GI_number: 15616206 # Func_class: E Amino acid transport and metabolism # Function: ABC-type dipeptide transport system, periplasmic component # Organism: Bacillus halodurans # 44 553 57 557 557 149 27.0 1e-35 MQPTRRAFLGGGLGLLGLGAVGCTTSPAAPSTAAPTSSGPGRLLVVGAPARALTRDPARA LDVESFRLIRQVFETLLGVDPDTGAPTPRLAERHEESDGGRLHTFHLVSGVVFDDGEPCD AAAVVANIERWAAAPAPVDGTVTPPSSFVSAFGGYAGDADSAFAGVEAHGELEVRLRLHS PRRHLAAALASPAFAISSPASWDRTVDVDGSEVTTPAGTGPYRWADAAETAELTRAHPGA SGATFLVPSDRHRGSDPAAYPVAVQAWGRASVRLRELRRGTADVIDVVAPGQLRPLVEAG TQVLPRDPLGVLYVGMNLDHPLVRAQYLRQAIAYAVDRPRIAGSDVFLEGTRLAHDLVPP SLGVGDEEARRYDVNPGRAREFLGLAGYDGEPLEFLYPVGTARPALPEPERVYAMVAHDL GAVGMHIVPVPVPEDQDYLHAVVSRPTRALHLMGRTGDYRDPHAFLEPFARSGRAETGYR NPRVVEDVDAAAAETDDDARRGLFRRVVRAMALDLPALPLVYPISALATGPRVASYPTSP QLDEPFSRVRLTEG >gi|289558483|gb|ADCD01000017.1| GENE 22 27646 - 29073 1455 475 aa, chain + ## HITS:1 COG:NMA0333 KEGG:ns NR:ns ## COG: NMA0333 COG0579 # Protein_GI_number: 15793344 # Func_class: R General function prediction only # Function: Predicted dehydrogenase # Organism: Neisseria meningitidis Z2491 # 1 474 15 488 488 547 56.0 1e-155 MSATLGVLLQKLEPTWSIALYESLDQAGLESSDPWNNAGTGHAALCELNYSPMDKNGRVD VTKALGINEQFWTTRQFWSSLVADGTLKDPKSFINPLPHMSFVWGDDHADYLRTRYEAMS AQPLFAGMEHSEDPEQIRAWAPLLIEGRESGQRLAASRNTGGTDVDFGSLTRQLITAMAG AGAEVRFGHKVTGLTRGTDGRWEVKVKNKAAGSELVDRARFVFVGAGGGALPLLQKSGIP EVKGFGGFPVSGQFLRCTDESVVNQHMAKVYGQAAVGAPPMSVPHLDTRFVNGKRSLLFG PYAGFSTNFLKTGSYLDLPLSVRPHNLSTMLDVAKDNMDLTKYLVTEVLKSRDKKIDALH EFYPEADGGEWELITAGQRVQVMKRKGRFGGVLQFGTEVVTHADGSLGGLLGASPGASTA APIMVKLLERCFPAKMAGWDGTLKELIPSLGHTLNDDPALLDEVRTVTDAALKLA >gi|289558483|gb|ADCD01000017.1| GENE 23 29081 - 32332 2591 1083 aa, chain + ## HITS:1 COG:BS_yerP KEGG:ns NR:ns ## COG: BS_yerP COG0841 # Protein_GI_number: 16077739 # Func_class: V Defense mechanisms # Function: Cation/multidrug efflux pump # Organism: Bacillus subtilis # 1 1024 14 1064 1065 434 30.0 1e-121 MGALARFSLGRRALVALVTVFIAVFGVLSAGQLKRELIPPLELPVISVSTLYPGASPEVV DAQVGEPLETALQAVEGLESSRSTSQSGFNAVQLEFAYGTDLNRARSQVDRVVANLGPQL PEEAETSSFAGSVSDFPVVFLALSGDEDLNTLRRRAEDVLAPRLQKIDGVRGADVLGGTD ENVSVVPDPAALTAAGLTTSDITDALEENAGLFPVGQVTEGATTYPVQAGAAVEDLEGLR GIVVAPSGDGEPRTLDEVADVTLVAAAPTSLTRTDGVPTLSVSVTATPDADLVAVSEAVR DALPELASVVGGGADLTVVFDQAPFIQQSIDTLFQEGLLGLAFAVLVIAVFLLSVRSTLV TAVSIPLSLLAALIGVAAFGYSLNTLTLGALTISIGRVVDDAIVVVENIRRHLGLGADRR TAILDGTREVATAITASTLVSVAVFLPIAFVGGLAGELFRPFAVTATVALLASLVVALTI VPVLCWWFLRAPRRGAETAAAPAVPGDRPVAAGGWLTRVYRPVLRWTQRHTVVTLAAALA LLAGTAALVPLIPTNLLGDSGQNSFVVTAEQEPGASLETTAAAAERIERVLLDTDGVETV QWTAGTAAGPMGAFGGSSADRARFTVVTDPDADQGALQDGVRAELTGLDGVGDVSVSTQQ GPSGGQDIEVSVSAPDPQALTAAADQVAQALRPVEGAREVTTPASDLRPTFQVDVDTVAA ARLGLTEEAVAGQAAAALQAVPVGEVRFGFESFAVQLGDPEPVESLDALRQVPVETAEGP VPLGDLAEVSRVSVPARVTSSNGERTAVVTVTPDDEDLGAVSRRVTQAVAELDLPEGVTA AVGGAAEQQAQTFRDLGLALLAAVATVYVVMVATFNSLRQPLVLLVSIPFAATGVFLALL ATGTPLGLSTMIGLLMLVGIVVTNAIVLIDLINQYRRDRGMTLDEAIEVGALNRVRPVVM TALATVLAMTPMALGITGHAGFISQPLAVAVVGGLVSSTLLTLVLVPVLYRLTEVRGERR LQEERRVAAEREAQRVAAERAAEQARRAEEASRAEERWAALSELDAGRLGRLRQRLRRRW RRA >gi|289558483|gb|ADCD01000017.1| GENE 24 32379 - 33902 1165 507 aa, chain - ## HITS:1 COG:VCA0521 KEGG:ns NR:ns ## COG: VCA0521 COG0419 # Protein_GI_number: 15601281 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA repair # Organism: Vibrio cholerae # 2 501 490 1009 1013 156 31.0 1e-37 RYEQAASELAERLVPGEPCTVCGSPEHPAPAATADTTVTEADVRDAEQARTAADRAAADA ETALRAAEQTLRTAREAAAGLAPEAAREALERAEAERAVLDQAAKDLAADRRRLTAAEKT LAGADETAAALAAEDGRLAEAAAHRAARLTELRDAVEAARGDVETLDARGDQVTAARRVL AALAAAQDEDARARAVADETGQALTAALAEQRFDDVDAARAARLEETEAAARTAAVQEWD AERARLAELEASEPVRRGRALAEAGVEPPTEEQTRAAAEALAAAEAASSSRATAVGRLDS LVATVRRQSAALTEVLERSAGLIAEHTRVRGLLDLVRGGGENLLKMPLTSYVLAGRLEEV AAAATERLLAMTDQRYSIEYSDAVGGRGNKGLELVIRDHYVDETRHPATLSGGETFMASL ALALGLADTVQAEAGGIELDTLFVDEGFGSLDADTLDDVLDVVDTLRTGGRTVGLVSHVE RMRQEIGVRLEVRKDRRGSSLAVHDGA Prediction of potential genes in microbial genomes Time: Thu May 26 06:56:45 2011 Seq name: gi|289558482|gb|ADCD01000018.1| Micrococcus luteus SK58 ctg1119142780178, whole genome shotgun sequence Length of sequence - 1551 bp Number of predicted genes - 3, with homology - 2 Number of transcription units - 2, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 39 - 530 782 ## gi|228473732|ref|ZP_04058478.1| hypothetical protein CAPGI0001_0279 - Prom 619 - 678 5.2 + Prom 472 - 531 6.5 2 2 Op 1 . + CDS 700 - 987 102 ## YpsIP31758_A0033 hypothetical protein 3 2 Op 2 . + CDS 1042 - 1404 977 ## Predicted protein(s) >gi|289558482|gb|ADCD01000018.1| GENE 1 39 - 530 782 163 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228473732|ref|ZP_04058478.1| ## NR: gi|228473732|ref|ZP_04058478.1| hypothetical protein CAPGI0001_0279 [Capnocytophaga gingivalis ATCC 33624] # 8 163 1 156 156 323 100.0 2e-87 MPISLICMIYKKHRQSEVKMTVEKRPTLSDFDFSRVKVNPGPPTENKARILLRIVEGAGV ALWQSDPESTPTILIQKGNLFPSPGGYTWGYKGGGCKNLAFAMVTVIYQDDHLEKAELSE RAYKLVEDYISVLQQDQPHDLSVAYIRKFLGDRELPAIYDQHR >gi|289558482|gb|ADCD01000018.1| GENE 2 700 - 987 102 95 aa, chain + ## HITS:1 COG:no KEGG:YpsIP31758_A0033 NR:ns ## KEGG: YpsIP31758_A0033 # Name: not_defined # Def: hypothetical protein # Organism: Y.pseudotuberculosis_IP31758 # Pathway: not_defined # 1 92 1 92 95 140 71.0 1e-32 MKLSDVATIKTNYPEADFWIIRRGSLNTVGKPSYDFYSESIGIKVLRTDIVLPRFLYYCF LNIHNQGRWKDLAKGSLSLVNIRVSDVSSIKLTPQ >gi|289558482|gb|ADCD01000018.1| GENE 3 1042 - 1404 977 120 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLDDIKKHVVKFDFVHGIIQGIVYLSMMLVIFKYGDLSNPSMRLGGLLSIISYIIVVGSP IVSRKSSAWDKDCYEFYILPAIVLITGIVAYLGCSFCWNERFEFKPFRFQHKRLYPCVYS Prediction of potential genes in microbial genomes Time: Thu May 26 06:57:09 2011 Seq name: gi|289558461|gb|ADCD01000019.1| Micrococcus luteus SK58 ctg1119142780337, whole genome shotgun sequence Length of sequence - 21205 bp Number of predicted genes - 17, with homology - 17 Number of transcription units - 11, operones - 4 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 1123 844 ## Mlut_10400 hypothetical protein 2 2 Tu 1 . - CDS 1342 - 2781 1313 ## COG0015 Adenylosuccinate lyase 3 3 Tu 1 . + CDS 2966 - 4546 1364 ## COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases 4 4 Tu 1 . - CDS 4453 - 8139 1861 ## COG2251 Predicted nuclease (RecB family) 5 5 Op 1 1/0.000 + CDS 8304 - 8720 430 ## COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism 6 5 Op 2 . + CDS 8792 - 10141 1256 ## COG1541 Coenzyme F390 synthetase 7 5 Op 3 . + CDS 10159 - 10848 516 ## Mlut_20320 transcriptional regulator, TetR family 8 6 Tu 1 . - CDS 10862 - 11821 445 ## Mlut_20310 hypothetical protein 9 7 Op 1 1/0.000 - CDS 11937 - 12869 897 ## COG1250 3-hydroxyacyl-CoA dehydrogenase 10 7 Op 2 . - CDS 13008 - 15209 1709 ## COG1012 NAD-dependent aldehyde dehydrogenases 11 8 Tu 1 . + CDS 15415 - 16407 496 ## Mlut_20280 hypothetical protein 12 9 Tu 1 . + CDS 16596 - 17033 455 ## COG0853 Aspartate 1-decarboxylase 13 10 Op 1 . - CDS 17055 - 17549 239 ## Mlut_20260 polyketide cyclase / dehydrase family protein 14 10 Op 2 . - CDS 17549 - 17932 308 ## COG2315 Uncharacterized protein conserved in bacteria 15 11 Op 1 7/0.000 - CDS 18048 - 18857 758 ## COG1250 3-hydroxyacyl-CoA dehydrogenase 16 11 Op 2 20/0.000 - CDS 18944 - 19729 750 ## COG1024 Enoyl-CoA hydratase/carnithine racemase 17 11 Op 3 . - CDS 19734 - 20951 928 ## COG0183 Acetyl-CoA acetyltransferase Predicted protein(s) >gi|289558461|gb|ADCD01000019.1| GENE 1 1 - 1123 844 374 aa, chain - ## HITS:1 COG:no KEGG:Mlut_10400 NR:ns ## KEGG: Mlut_10400 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 5 359 2 330 358 94 35.0 6e-18 MSARRTSRPLSTALAAAVLAGGLAATAAAPALAAPAETTDGSQYGHFVGATFGSTELSPL TGRFSTLHAVKDVRVTVAPFYPSFTDLEEISGYVPGEMGPETDVEFAYDAELETGYVDVL EQRRVLGEEGTAGAVFTLYVDGRGVATLIFGEDRDLGDDVPGMFLDAEGPQAYDFGARPT VDHQTHLAAPGSRLVHLPGNSSGDVPGADATMIVAEQPKHGTLVELPRIGDPANWTPDGA NGSWASTVYVADEGFTGTDQAVFTITDEATGEEKTLVATFSIGDPRAADPHLGVQGTGLP FDEARVWEALEAQGEDDASEAPAPESPATPAPDSADAPEASEPSEPAGEHTVPETVETGS GQAWWLAALGALGA >gi|289558461|gb|ADCD01000019.1| GENE 2 1342 - 2781 1313 479 aa, chain - ## HITS:1 COG:PM1851 KEGG:ns NR:ns ## COG: PM1851 COG0015 # Protein_GI_number: 15603716 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate lyase # Organism: Pasteurella multocida # 22 474 8 455 455 433 49.0 1e-121 MTSQPAPASTAHRRSLAEAGIALGPLDGRYRAAVEPLVEHLSEAALNRNRIHVEVEWFIH LAEHRVLPGLEPLTAEQQAGLRAIVTDFDAESVAELAATEKVTVHDVKAVEYFIADRLEG LGLGRLKPLVHFACTSEDINNLAYAVGVRDAVEQVWLPAARAAVATVSAMATEAAETPML SRTHGQPATPTTLGKEMAVFVHRLTRQTRRIAGQEYLGKINGATGTYAAHLAAAPDADWP ALSRSFVEHLGLTWNPLTTQIESHDWQAELYADVARFNRILHGFCVDVWSYISIGYFAQI PVAGATGSSTMPHKVNPIRFENAEANLELSCALLDSLGATLVESRWQRDLTDSTSQRNIG VALGHSVLALTNVTKGMGQLQVAEPVLAEDLDTNWEVLGEAVQTVMRAEAIAGVEGMDNP YERLKELTRGHRVDGARMREFVQGLGLSEAAQARLLELTPAGYTGVAAELAKEFGPAQG >gi|289558461|gb|ADCD01000019.1| GENE 3 2966 - 4546 1364 526 aa, chain + ## HITS:1 COG:PA2555 KEGG:ns NR:ns ## COG: PA2555 COG0365 # Protein_GI_number: 15597751 # Func_class: I Lipid transport and metabolism # Function: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases # Organism: Pseudomonas aeruginosa # 3 521 14 537 555 370 44.0 1e-102 MTERTGQASEAGTIDRLMAGWVADVETPDACAAHLLCDRWPADAVAFRFVAEDMSAVDLT FGDLADRSRRLATGLAARGVTRGDRVPVMMSKREELVITLLALWRLGAVHVPLFTAFAEG AARMRIEGAAARLVVAEPRQAEKLTDIPGIEIIRTGPEWDALADSAPLTEDVAVGGDGPI ALLFTSGTTGRPKGVPVPLRAAAAFAVYLTCAVDLRPEDLFWNAADHGWAYGLYYGIVGT LVLGATSVQYRGAFSPATMVEVIRSQGVTNLAGAPTMFRALAKAGEVTEDAPLRLRRVST AGEPLPPSVLEWGRVALGTEIRDHYGQTELGMVICTLAHPELAAPPRPGSMGVPLPGIAA EIRDGQIAIDAASPLFWFPGYLGEPEKTAERFTPDGRWYLTGDTARQDDDGWFFFSSRDD DVILAAGYRIGPFDVESVLIDHPRVQEVAVVGLPDPEGVRGEEVVAFVVPAGAVADPDAL AAALQAKVRDEYSKHAYPRRVHFVDRLPKTPSGKLQRFLLRQGAAG >gi|289558461|gb|ADCD01000019.1| GENE 4 4453 - 8139 1861 1228 aa, chain - ## HITS:1 COG:MT1290_1 KEGG:ns NR:ns ## COG: MT1290_1 COG2251 # Protein_GI_number: 15840697 # Func_class: R General function prediction only # Function: Predicted nuclease (RecB family) # Organism: Mycobacterium tuberculosis CDC1551 # 10 654 15 617 619 405 44.0 1e-112 MVTFAPDRASFMLSPSDITAAATCTYGWLRGTVDPRLGRAERIGVADAFLERVSRLGDEH ESRVLARLEAEHGADQVVRLARPERYTPEGVRAARERTAAALAARPAVVFQGMLHDGAFG GLADFLVLRTDEEHPEGAYEVVDTKLARHARVTALLQIAAYADLLDGMGVPRARQGSLWL GDGSRHVADLDEVIPVYRHQRARLEALLQDHVAAGQPARWGDDRLSVCGACEACEEAVAE HRDVLLTAGATRLQRTRLREAGITTIEQLAASVAPPEGMARRTWEALREQAAIQLEPAGA DGLPPHRIVDPRAVAGLPVPDTGDVFFDFEGDPLWVSADGSMEGLEYLWGWVEAPGGDTA RTASADFRFTGLWADTRAAERAALEQFVAFVEARRATHPGMRIYHYATYEVTALKRLTVR HGVGERELDDWLRAGLFVDLYATVRAALRAGVPSYSIKKLEPLYMGAEHRAEDGVTTAAD SVTEYHRYVAAMEAGDTEVARAIRADIEDYNRYDCVSTARLRDWLLAQVEPEEAAVADRP VDDAATGDEPLVEAAPSLQEQDAALAASLQALAGVERDEAGGTGAPETELDGGPRGVALL AAGLGYFARENKPLWWAMFDRAVSAPDEWQEPRANLVFDTVESVGAWERPTPRSNPARTL TVTGRLEPGTEVRPRRNSQERFKLNALYEQPPRWAELAPNAVRWQSRSPVDVTEVEEIAP GRFRVSLLQRLSAKYEPEPHAEVPMAVFHLNYVRPGGLLERIREQAAETARRGRLPDGAV FDILARRAPRTTGRTLAAIGADVRDGRRDGVGGLVEAVESARGSYVAVQGPPGTGKTFVG SRAVKELLDRGWTVGVTAQSHAVVENFLDQLIGVGVDPDRVGKEPEDPDGPHRWTSLGSS EVHAFLAPGRVLGGTAWTFANAAAQPVDLLVVDEAGQLSLAHLLGASALAETVLLLGDPQ QLPQVSKGEHPQPIGDAALTWIAEGAPVLRADRGFFLDTSWRMHSALTHAVSELSYAGRL GAREEVTDARRLDGVDPGLHPWPVSHTGNAVSSPEEAAAVVEIIRSLLGRTWFHRPRRPR PAARAVRRDRGGPVQRAGRHGPGGTRRRRPRGHHRRHRGQVPGPGGRRRDPDDGGVLTAG RAARAGLPPEPEPAQRVDLARAVGRLPRPLPRPRGRAAHQARGPADDRRVPAARAPLTQP AAPWRSRNRCSLPEGVLGSRSTKCTRRG >gi|289558461|gb|ADCD01000019.1| GENE 5 8304 - 8720 430 138 aa, chain + ## HITS:1 COG:RSc2874 KEGG:ns NR:ns ## COG: RSc2874 COG2050 # Protein_GI_number: 17547593 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Uncharacterized protein, possibly involved in aromatic compounds catabolism # Organism: Ralstonia solanacearum # 1 133 14 142 155 81 38.0 5e-16 MTETAHHPMLAADRVARWLGVTLEAAEKDHARIRMTLTEDQHNGFGLAHGGAVFAFADTC FALTCNDPASDGSTLTVASGVDVNFLAATRAGQTLVAEGRLVAAAGRSAVYDITVTTDDG TPVAAFRGRSRTIPAPGR >gi|289558461|gb|ADCD01000019.1| GENE 6 8792 - 10141 1256 449 aa, chain + ## HITS:1 COG:RSc2875 KEGG:ns NR:ns ## COG: RSc2875 COG1541 # Protein_GI_number: 17547594 # Func_class: H Coenzyme transport and metabolism # Function: Coenzyme F390 synthetase # Organism: Ralstonia solanacearum # 25 446 11 432 436 507 61.0 1e-143 MLEASIPNPYTPAPLPAPADRGAPDPEETMSRDQIEALQFERLRWTLHHAYENVPAYREH FDAHGVHPSDFTELGDLAKFPYTDKEFLRKSYPFGAFAATGPELRRIHASSGTTGQPTVV GYTDDDLATWATLVARCFRAGGIRPGDRVHNAYGYGLFTGGLGAHYGAERIGAAVIPMSG GQTEKQVQLITDFQPRAILSTPTYLLTIADGFKKLGLDPRESSLEVAILGAEPWTEEMRR EIEQTFDLDALDIYGLSEVMGPGVAGESAATKDGSHIWEDHFRPEIIDPLTDEVLETGRH GELVFTSLTKQALPIIRYRTHDLTRLLPGTTHPGHRRMGRITGRSDDMIILRGVNLFPSQ IEELALKESALSPHFTLEITRPDRMDQMAVNIERRDHASLEEAQACAAHLRMEIKTKIGS SCVINVVEPESLARSSGKLKRIYDLRDQA >gi|289558461|gb|ADCD01000019.1| GENE 7 10159 - 10848 516 229 aa, chain + ## HITS:1 COG:no KEGG:Mlut_20320 NR:ns ## KEGG: Mlut_20320 # Name: not_defined # Def: transcriptional regulator, TetR family # Organism: M.luteus # Pathway: not_defined # 27 229 1 203 203 360 97.0 3e-98 MPTPACPVEWTGAPSSSASARLRRSPVPQSSPTPRRGRPGYDRQTLLAECVELFNRHGYE ATSMGMLATHLGISKSAIYHHVESKEAILDHAVTEALDALEACLDDVVASGADAGAQVEA AIRGTLGVLAEKQPEVTLLLRLRGNSAVELAAVERRREITRRLGDLLEAAQAAGAVRSDV SPRNLARLALGMINSIVDWYRPDRGAPGQQGPGQMIDAVTGVVLGGLRG >gi|289558461|gb|ADCD01000019.1| GENE 8 10862 - 11821 445 319 aa, chain - ## HITS:1 COG:no KEGG:Mlut_20310 NR:ns ## KEGG: Mlut_20310 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 74 319 60 305 305 228 95.0 2e-58 MTTSRLPLLGVLAVGALALAGCAGGGTEPSSPAPSSASSTTTAASSASTSPAASSSTAPT SPAASASTASSGGASASASASGSLSLEMPPALDGQRTLAVQAAVQRAAGPGSEVGLSAAS PLERQTELRQRAAGLEQAVDAGASPAPTRSADQQACLDATRSDLERDAEAGAADLGLTAQ PETAATTGGGPTSTPPPSFTASPDAEVTPLGVRVTVYPTEEAARAALEDARAAGQACTGV DLAGLGVESVTRTEHEGGTAYTALPAPGGSVYSHLTAVQDGARIVAVAQADADGGVPADA EDRAASIVADVLAALDGEG >gi|289558461|gb|ADCD01000019.1| GENE 9 11937 - 12869 897 310 aa, chain - ## HITS:1 COG:DRA0143 KEGG:ns NR:ns ## COG: DRA0143 COG1250 # Protein_GI_number: 15807812 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxyacyl-CoA dehydrogenase # Organism: Deinococcus radiodurans # 8 287 55 335 347 224 42.0 2e-58 MSEFTRFEQVAVLGTGVLGSQIIMQAAYHGKRVMAYDAVPAALEGIERRWAWIRQGYEAD LGEGYDPQRFDEAIARITPTSDLGEALADADIVVEAVPENLELKRKVWAQVGELAPATTL FATNTSSLLPSDFADASGHPERFLALHYANRIWAQNTAEVMGTAATSPEAVAGALQFAEE TGMVPVHVRKEIPGYFLNSLLIPWLQAGSKLYMHGVGNPADIDRTWRVATGNERGPFQTY DIVGFHVAANVSRNTGVDWQRGFAELLEKSIAEGHSGVADGQGFYRYGPDGENLGPVEDW NLGDKDTPLG >gi|289558461|gb|ADCD01000019.1| GENE 10 13008 - 15209 1709 733 aa, chain - ## HITS:1 COG:SMb21635_1 KEGG:ns NR:ns ## COG: SMb21635_1 COG1012 # Protein_GI_number: 16265302 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Sinorhizobium meliloti # 61 536 12 487 487 423 51.0 1e-118 MHVSARVRTNNRPIGRDSSASPTPGAPVTVTAPSLPEILPSYVAGSWWTPSHPSTVTDVT DANTGARLTGVSTDGLDTAALIEHARTVGQQTLGELTIHERALKLKELALYLNSRVQELY DVSFATGATQRDHAFDVDGGIGTLFTFSGKGRRELPNSTVIIDGDVEPLSRDGSFIGEHI YQRIPGVAVQINAFNFPVWGMLEKFAPAFVAGVPTVVKPATPTGYVTQKCVELMLESGVL PEGSIQLISGSARDLLDHLDYRDHVAFTGSAATAATLKKHPNVQEGGVRFTAETDSLNAA ILGPDADPESPEFEAFVKVVFQEMTVKAGQKCTAIRRVIVPQDRVEAVTAALTERLAAKV VLGDPRVEGTTMGALASKEQQGEVRGAVQRLVDAGGQVRLGGPEGSTGGADAESGAFFAP TVLTFEDARTPEVHSVEAFGPVTSVIGYTDVADAVALAALGSGSLVATVATNDGETARAF AAGIGAHHGRVHVLNRQTAATTTGHGAPVPVLVHGGPGRAGGGEELGGVRAVKHYMQRTA IQGSPDMLTAITGVWHQGAAAHTVTREDVEAGTAVHPFYKSLAELTVGDQFASGLRTVTL EDITAFAEETGDRFYAHTDEEAAMANPFFPRRVAHGYLLVSWAAGLFVAPDPGPVLANYG LENLRFITPVTYDDAIRVTLTAKRITPRVSDEYGEVAWDCRIHNQKDELCAQYDVLTLVA KTWPMAPSEASQG >gi|289558461|gb|ADCD01000019.1| GENE 11 15415 - 16407 496 330 aa, chain + ## HITS:1 COG:no KEGG:Mlut_20280 NR:ns ## KEGG: Mlut_20280 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 330 1 330 330 535 94.0 1e-151 MPRSPAPLPPMRCGLDGLLRAPTVFSTPAAREAGVSAARLGRGDVVSLGWGLWGRRGVDP DPMDHVRALQDLHPEGVFSHVTAARVLGLWLTGPLAADRSVHIATPRGHGTASSRAGICS HRLRVDAPVRIVDGVRVTAPGWIFVDLAAQAGPLEHLVALGDSMVRTAPMEARRRRLPPG VTNVAELRAAVEERGRVRGIRAAREALELVRPGADSPQESRLRARLVLDGVPEPAVNPCV RLATGQRLRVDLVWADAKVAVEYDGDQHRTDRRQWREDRERDAALRAEGWEVIRVTADVF RPGHWELFVRQLRGLVAARTRPGRVPPSWI >gi|289558461|gb|ADCD01000019.1| GENE 12 16596 - 17033 455 145 aa, chain + ## HITS:1 COG:MT3706.1 KEGG:ns NR:ns ## COG: MT3706.1 COG0853 # Protein_GI_number: 15843213 # Func_class: H Coenzyme transport and metabolism # Function: Aspartate 1-decarboxylase # Organism: Mycobacterium tuberculosis CDC1551 # 1 122 1 122 139 170 72.0 8e-43 MLRTMFHAKIHRATVTQADLHYVGSVTVDQDLLDAADILPGELVSIVDVTNGARLETYTI AGERGSGVLGINGAAAHLVHPGDIVILIAYGQMGDDEARTFQPKVVHVDADNRIVELGVD PADGLLDGLSRPPLSREWNEAQAEL >gi|289558461|gb|ADCD01000019.1| GENE 13 17055 - 17549 239 164 aa, chain - ## HITS:1 COG:no KEGG:Mlut_20260 NR:ns ## KEGG: Mlut_20260 # Name: not_defined # Def: polyketide cyclase / dehydrase family protein # Organism: M.luteus # Pathway: not_defined # 1 164 1 164 164 231 93.0 5e-60 MSADRPFRFTHRWAVPADARSVLALLADPAGYPHWWPAVPRARHLGPDRAAVRLRGFVPV RLTMERLIDDRARGLLLAHLSGDLTGTVRVTVHDDGAPAGHAPRCIVAWEQEVVLTSPWM RAVARMPGARTAMGLSHAAAMRSARRALGAKAVPSADPARTSRP >gi|289558461|gb|ADCD01000019.1| GENE 14 17549 - 17932 308 127 aa, chain - ## HITS:1 COG:STM0579 KEGG:ns NR:ns ## COG: STM0579 COG2315 # Protein_GI_number: 16763956 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 114 1 113 122 93 42.0 1e-19 MDEPTLLRVARDRALELPGSAASHPFGPDTEVVKVQGKLFVVFIDHDGRRLVNVKARPED GAQLRAALPAAITPGYHMDKRHWLSLAAHPDLDEQLVRDLVTESYLLVVAKLPRTRRPVD PDTFGRA >gi|289558461|gb|ADCD01000019.1| GENE 15 18048 - 18857 758 269 aa, chain - ## HITS:1 COG:DR1068 KEGG:ns NR:ns ## COG: DR1068 COG1250 # Protein_GI_number: 15806088 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxyacyl-CoA dehydrogenase # Organism: Deinococcus radiodurans # 1 268 11 278 278 201 43.0 9e-52 MGGGIAHAFLVSGSSEVVVVERDPRSAEAARERIEADLAASLDRGKIDGDLDEWAQRLTV TVDRADFARCDLVVEAVFEDMQVKIEALTDVEAHLREDAWLASNTSSLSIDEIATHLQRP ERFCGLHYFNPVPASKLVEVVIGEQTGAELQALSTEWVRGLGKTPVVVKDAPGFASSRLG VAIALEAIRMVEEGVASPEDIDAAMVLGYKFPVGPLALTDIVGLDVRLGIAEYLESQLGE RFAPPQLMRDMVARGELGRKSGKGFFDYR >gi|289558461|gb|ADCD01000019.1| GENE 16 18944 - 19729 750 261 aa, chain - ## HITS:1 COG:AF0435 KEGG:ns NR:ns ## COG: AF0435 COG1024 # Protein_GI_number: 11498047 # Func_class: I Lipid transport and metabolism # Function: Enoyl-CoA hydratase/carnithine racemase # Organism: Archaeoglobus fulgidus # 21 260 16 250 256 139 37.0 6e-33 MTDFSHFSALRVEEREDRVHARMDRPGVRNAIDQTMVDEFHELCAHLEREPKILIISGTQ VESTREPGTFSGIFASGADIGQLRERRRDDALRGVNSQVFDRIHRLPMPVIAAIDGFALG GGAELAYAADFRIATPALKMGQPETSLGITAAAGAQWRLKELVGEPVALELLLAGRILDA QEALELKLVTELHEPDALLDAADALADRIAQQDPLAVRLSKRVFHLPREAHPHVDEIAQA ILFESEAKFERMQAFLDRKKK >gi|289558461|gb|ADCD01000019.1| GENE 17 19734 - 20951 928 405 aa, chain - ## HITS:1 COG:paaJ KEGG:ns NR:ns ## COG: paaJ COG0183 # Protein_GI_number: 16129358 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA acetyltransferase # Organism: Escherichia coli K12 # 6 405 3 401 401 382 53.0 1e-106 MSAQSQALLVGGRRTPVGKYGGALSSVRPDDLAALTIKAVIEDAGIDPSVVDDVILGNAN GAGEENRNVARMAWLLAGFPDTVPGITVNRLCASGMSAIGIATAMVRSGMADVVVAGGVE SMSRAPWVMEKPTTAFAKPGAAFDTAIGWRFVNPRFADGEFGEKFTFSMPETAEEVGEVD GITREDADAFAARSHERALAAIEAGRFADEIVPVVVTGRKGAETTVDTDEGPRPGSTPEV LAGLRPIIKPGGVVTAGNSSSLNDGASAILVVSERAAQKYGLTPRARVVESTSAGLAPEI MGLGPVPATEKALERSGWSVADLGAVELNEAFATQSLASMRRLGLDPETVNADGGAIALG HPLGSSGSRLVVTLLGRMEREGADRGLATMCVGVGQGSAMLVERV Prediction of potential genes in microbial genomes Time: Thu May 26 06:57:44 2011 Seq name: gi|289558432|gb|ADCD01000020.1| Micrococcus luteus SK58 ctg1119142780299, whole genome shotgun sequence Length of sequence - 26318 bp Number of predicted genes - 28, with homology - 26 Number of transcription units - 18, operones - 5 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 720 350 ## COG0588 Phosphoglycerate mutase 1 2 2 Tu 1 . - CDS 898 - 1224 129 ## gi|289704818|ref|ZP_06501236.1| hypothetical protein HMPREF0569_0511 3 3 Tu 1 . + CDS 1676 - 2098 401 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs 4 4 Tu 1 . + CDS 2276 - 3358 547 ## gi|295840785|ref|ZP_06827717.1| hypothetical protein SSBG_04190 5 5 Tu 1 . - CDS 3628 - 4002 158 ## COG3293 Transposase and inactivated derivatives 6 6 Tu 1 . - CDS 4556 - 5299 760 ## COG0785 Cytochrome c biogenesis protein 7 7 Tu 1 . - CDS 5456 - 7021 1339 ## COG2132 Putative multicopper oxidases 8 8 Op 1 . - CDS 7134 - 7550 161 ## 9 8 Op 2 . - CDS 7634 - 8959 728 ## Mlut_18350 hypothetical protein 10 9 Op 1 40/0.000 + CDS 8750 - 9382 525 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 11 9 Op 2 . + CDS 9379 - 10521 705 ## COG0642 Signal transduction histidine kinase 12 9 Op 3 15/0.000 + CDS 10544 - 10948 256 ## COG2608 Copper chaperone 13 9 Op 4 2/0.000 + CDS 11024 - 13261 1753 ## COG2217 Cation transport ATPase 14 9 Op 5 . + CDS 13321 - 14004 444 ## COG3544 Uncharacterized protein conserved in bacteria 15 9 Op 6 . + CDS 14093 - 15148 853 ## COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase 16 10 Op 1 . - CDS 15255 - 16139 414 ## COG3588 Fructose-1,6-bisphosphate aldolase 17 10 Op 2 . - CDS 16236 - 16646 269 ## Mlut_18430 protein of unknown function (DUF326) 18 11 Tu 1 . - CDS 16938 - 17540 396 ## Mlut_18440 hypothetical protein 19 12 Op 1 . + CDS 17583 - 17882 282 ## Ksed_23460 transposase 20 12 Op 2 11/0.000 + CDS 17879 - 18379 350 ## COG2801 Transposase and inactivated derivatives 21 12 Op 3 . + CDS 18401 - 18760 127 ## COG2801 Transposase and inactivated derivatives 22 13 Tu 1 . - CDS 19035 - 19409 109 ## 23 14 Tu 1 . + CDS 19637 - 20122 260 ## Sked_33280 hypothetical protein + Term 20365 - 20399 3.2 24 15 Op 1 2/0.000 - CDS 20147 - 21400 775 ## COG3328 Transposase and inactivated derivatives 25 15 Op 2 . - CDS 21799 - 22443 288 ## COG0500 SAM-dependent methyltransferases 26 16 Tu 1 . + CDS 22651 - 24018 926 ## COG1541 Coenzyme F390 synthetase 27 17 Tu 1 . - CDS 24394 - 25722 825 ## Trad_0629 cytochrome P450 28 18 Tu 1 . - CDS 25845 - 26216 115 ## COG0597 Lipoprotein signal peptidase Predicted protein(s) >gi|289558432|gb|ADCD01000020.1| GENE 1 3 - 720 350 239 aa, chain - ## HITS:1 COG:Cgl0397 KEGG:ns NR:ns ## COG: Cgl0397 COG0588 # Protein_GI_number: 19551647 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoglycerate mutase 1 # Organism: Corynebacterium glutamicum # 2 229 6 232 248 174 42.0 9e-44 MLTLLRHGESTANEAGTFTGLLDVPLTHRGERQASAAGQLLRSNHITPDVVVTSTLRRAV RTAELVCDALGTQLPTEAVWQLNERNYGALTGMTKTDARRMLGDDEYVRLRRSRTGTPPP MSLHLWEELRSSSALRGLPDGALRRTEALSDVIKRVRPVLHDRLLPMVRSGRSVLVVAHG NSLRALCACIDDLTDPELEQLNLPTGQPVQYHLAPTGALVPRGGAFLDPVAAQHAAALS >gi|289558432|gb|ADCD01000020.1| GENE 2 898 - 1224 129 108 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|289704818|ref|ZP_06501236.1| ## NR: gi|289704818|ref|ZP_06501236.1| hypothetical protein HMPREF0569_0511 [Micrococcus luteus SK58] # 1 108 1 108 108 139 100.0 6e-32 MVESNTAGVVVVGVQSGQGHDVVGVAAAVAERFSARLVCVVVDPALLSAGVRADGSEIIE PIDPDTADSDPQQLPDEDMRSSEICCGAIVDVDSSPASGPESRTRCGG >gi|289558432|gb|ADCD01000020.1| GENE 3 1676 - 2098 401 140 aa, chain + ## HITS:1 COG:Cgl1671 KEGG:ns NR:ns ## COG: Cgl1671 COG1961 # Protein_GI_number: 19552921 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Corynebacterium glutamicum # 1 135 46 181 184 113 48.0 1e-25 MRYVREGDLVKVASMDRLGRDTRDLYAIVDELTAKGCAVQFVSERITVNKSGTSPVDGLM LGILAAFAEFERRRIKERQAEGIALAKARGKYVQAPKLSDTDVEQARVKIEMGIPKAEVA RTFGVSRQTLYTSLRRFESG >gi|289558432|gb|ADCD01000020.1| GENE 4 2276 - 3358 547 360 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|295840785|ref|ZP_06827717.1| ## NR: gi|295840785|ref|ZP_06827717.1| hypothetical protein SSBG_04190 [Streptomyces sp. SPB74] # 7 348 10 332 343 91 29.0 7e-17 MRGHSDAWPTSLRALRANRPPLAKRGARGELFSAGLEQAEQFWMAANSVGPETRPLLLFY GLGQAGQALCAAAATKPSAGHGLTFKMVDPLYGEQADLGEVMIAPNGAGLATEVASIRKS PLLQEPVSLGRLIGALGYFASTVVPSAGDTNRLEVMGGESGAQRNPHTSPATGELTLSPV PAHLTTRDGQVDVGYPGVGRRTGAAPGVEEIREWLRPYPALAKLGTPRHVSEPWSYPYGS SSITVTWDVSGDGKAGTQAQWVRSILDVVSAEHGPSGSPYGEVLPGVGGNDSAQDPLVTW WLVLYGLSNLVRYHPAAWRATLDVDKSTLAVPLEQLVSFASEKVPDLLFEAFVDLGGGRQ >gi|289558432|gb|ADCD01000020.1| GENE 5 3628 - 4002 158 124 aa, chain - ## HITS:1 COG:Rv1150 KEGG:ns NR:ns ## COG: Rv1150 COG3293 # Protein_GI_number: 15608290 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Mycobacterium tuberculosis H37Rv # 24 117 76 169 183 68 48.0 2e-12 MLATTMEQISVAGARGRPRTRPQRLIADRGYPSKANRAWLRRHGIAATILERADQIAHRR RCPGRPIDFAEDQRQRYRGRNVVERCFNRLKQWRGIAMRSDKYARNYHAGLSLAATLHWL ATIL >gi|289558432|gb|ADCD01000020.1| GENE 6 4556 - 5299 760 247 aa, chain - ## HITS:1 COG:MT0549 KEGG:ns NR:ns ## COG: MT0549 COG0785 # Protein_GI_number: 15839921 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Cytochrome c biogenesis protein # Organism: Mycobacterium tuberculosis CDC1551 # 5 238 4 249 259 148 44.0 7e-36 MGEYFAQTVQSGALLLAIPLAAIAGIVSFLSPCILPLVPGYLGYVSGLSDPTRPDNRRRV MTGVGLFILGFAAVFTLYGAAFGLIGGWLLRWQDLLIRILGVLVILMGLALMGMLTFLQR TTTPSFTPRTGLAGAPLLGLGFGLGWTPCMGPTLSAVLALSTTTGGAWRGALLGFVYCLG LGIPFVLVARGLGWVSTALGFVRRHMRAFNIAGGTLLVLVGVLMATGIWTAWIYQLQNLA GTFTTPV >gi|289558432|gb|ADCD01000020.1| GENE 7 5456 - 7021 1339 521 aa, chain - ## HITS:1 COG:MT0869 KEGG:ns NR:ns ## COG: MT0869 COG2132 # Protein_GI_number: 15840261 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Putative multicopper oxidases # Organism: Mycobacterium tuberculosis CDC1551 # 7 520 17 503 504 352 40.0 1e-96 MTSSLTTRRTFLGASVGALALAGLAACADPAISPQPSGRILPTDPLVAEYEKRRAASGST VTHRLSAAPLETSVQGRGLTTWGYNDGLNGPLLRAQTGDLLKVSVANDLPEDTSVHWHGL ALRNDADGVQGVTQDPIAAGGRYTYGFRLSHPGTYWYHSHFDTQRERALYGALIVEDPNE PLSYDQEWVVILDDWLDGITGTPQDVVEELSAGMDMSGDMEGMAGMAGMDHGSMSQDSSS GMPMKHMLMGAESDYLGGDAGDVKIPVHLFNGRPPSDPDTFSSTPGNRIRLRLINAAGDT AYRVGIPGQELTITHTDGFPVQPRQADAVVLGMGERLDVLITLGDQAVPVLALPEGKTGH AYGIIAAGPKTTLSGRLPQTLGGTVLDGSRLKAHESVLLPPKDPTRTHEVRLTGSMMEYD WGINGRRFDPANPFEGAFELRLDERVRVTMTNDTDMWHPMHLHGHTFQLADHGARKDTVI IKPRQTIVFDFEADNPGQWLTHCHNAYHAEAGMMGVFSYIH >gi|289558432|gb|ADCD01000020.1| GENE 8 7134 - 7550 161 138 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MHAGTGTSAAWAATGTAAATTVHHLGPGAIGPAGMVAEVVLPAEPAGDEAADPGLPVCAL EAVDDTCASALTKAPVVSHLASRALLPSPGGGLTAPPLPWVAHFRPPWTLHWLNWPSAAP KAPGRAPPVSAGSANTSG >gi|289558432|gb|ADCD01000020.1| GENE 9 7634 - 8959 728 441 aa, chain - ## HITS:1 COG:no KEGG:Mlut_18350 NR:ns ## KEGG: Mlut_18350 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 154 441 1 288 288 449 98.0 1e-124 MLIAAGGEHQHIALGEGPHPPAHLDPVQPGQAQVQDHHVGLVNPGGLHCGRAGVGEGHLV AGPLQVGGHHARQRLLVIDHQHPAGRRTSPSVSPSASARVHGSSLALSRAPAAQNGAGAG NLHRIFKANRPIPARHRPTMVEAPPFGPGRKGSMTPLTRRTLIAGGLTLLGAGTLTACAA PNPATSPAAGTGTQGTGTAITHVHALTRDPESGEVLLATHQGLFRLQDGELTQVGPVVDF MGFTLTPEGRYLASGHPAPRTDLPEPLGLAESTDRGQSWTVLSRGGASDFHALAAGPNGV LGFDGQLRASTDGLTWQSLEIPVAPASLAISPQTGTVLATTETGMLRSTDHGATWTTLDT PQLMHLVAWADDTTAVGAGTEGHLLTSTDAGDTWTASDRPVGTATALGTGITDDGQTEAL LVVGSTVLSTTDGGNTTESLL >gi|289558432|gb|ADCD01000020.1| GENE 10 8750 - 9382 525 210 aa, chain + ## HITS:1 COG:Cgl2904 KEGG:ns NR:ns ## COG: Cgl2904 COG0745 # Protein_GI_number: 19554154 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Corynebacterium glutamicum # 1 209 27 239 240 242 60.0 4e-64 MVATYLERAGYEVALTHTGPAAVQAARVHEPDVMVLDLGLPGLDGIEVCRRVRAFSECYV LMLTARGDEHHRLEGLAVGADDYITKPFSVRELVARVGAVMRRPRTTVSAPEPERVCGDL VIDLAAHEARVSGQVVQLTRTEFDLLAALSGRPHQAFSRRQLIDIVWDPAWVGDERLVDV HIKNLRRKLDADPARYIDTVRGVGYRMAEQ >gi|289558432|gb|ADCD01000020.1| GENE 11 9379 - 10521 705 380 aa, chain + ## HITS:1 COG:Cgl2903 KEGG:ns NR:ns ## COG: Cgl2903 COG0642 # Protein_GI_number: 19554153 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Corynebacterium glutamicum # 9 370 6 371 399 329 54.0 4e-90 MTGRRRYQGLAARFFLAQLLVVGASVLAAVVVASLAGPPLFHEHLEQAGAGHDAAQMLHV EQAYRDANFWTLGVALATALICCLALTWHVARRIQSPINALTQAAKAMAGGRYDTRVPAM GAGTEVEELAGSFNTMAARLQRTEDTRRRMLSDLAHELRTPVSVLTVYHEALQDGVSHWD EPTGELMGEQLARLTRLVEDINDVSRAEEGRIELDRSPQGVSGLLHAATEAHKEAYATKG VALTMDADPGLAVDVDRQRMGQVLGNLLTNALRHTPAGGRVTLEARQSPSGVTLSVTDTG EGISPEHLPHVFERFYRGDTARDRDHGGSGVGLAISRALIQTHGGTLSATSTTAGATFTI DLPTKQPPTSPPTGAPVYPP >gi|289558432|gb|ADCD01000020.1| GENE 12 10544 - 10948 256 134 aa, chain + ## HITS:1 COG:Cgl2901 KEGG:ns NR:ns ## COG: Cgl2901 COG2608 # Protein_GI_number: 19554151 # Func_class: P Inorganic ion transport and metabolism # Function: Copper chaperone # Organism: Corynebacterium glutamicum # 58 132 2 76 78 67 57.0 8e-12 MIPPGGIYQEERRRPAPPSDLKETVMTESARTPLPGATNGCSCCAPAADATAPAGHQSAD PTGTSAGDATYQVEGMTCGHCVGSVAEAVSALDGVDDVRVELVAGGASPVTVTGPASADS VRTAIEAAGYRVRI >gi|289558432|gb|ADCD01000020.1| GENE 13 11024 - 13261 1753 745 aa, chain + ## HITS:1 COG:Cgl2900 KEGG:ns NR:ns ## COG: Cgl2900 COG2217 # Protein_GI_number: 19554150 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Corynebacterium glutamicum # 1 743 1 735 739 960 77.0 0 MSTPHHHDHPTDQTAEHPDPNPHAGHANHTDHATHHPADAATHGQAMPQGHAHSALDEDH QVHDHGQHAGHSTAMFKNRFWVSLVLSIPVVFFSHMVGQLLGYHVPEFPGSAWIAPVLGT VIYLYGGMPFLKGGLTELRARQPGMMLLIAMAITVAFVASWVTTLGIGDLMLDFWWELAL LVVIMLLGHWMEMRALGAASSALDALAALLPEEAEKVVDGDTITVPITELAVGDVVLVRA GARVPADGAILEGAAEFDEAMITGESKPVLRQAGDTVVAGTVATDNTVRVKVAAVGTDTT LAGIQRMVADAQESSSRAQALADRAAALLFWFALVAAIITAIVWTAIGQPTDAVTRTVTV LVIACPHALGLAIPLVIALSTEKAAKSGVLIKDRMALERMRTIDVVLFDKTGTLTEGAHV VTAVTAMPGVSEAELLAVAAAAEADSEHPVARAIVTAAGQHPQASTLRKRGTDFSAAMGR GVRATVDGSEILVGGPNMLRELNLTMPAEITEHTASWTARGAGVLHVLREGSVIGAVAVE DKVRPESRAAVAALHARGIKVAMITGDARQVAEAVGADLGIDEVFAEVLPQDKDTKVTEL QSRGLSVAMVGDGVNDAPALARAEVGIAIGAGTDVAMESAGVVLASNDPRAVLSMIELSQ ASYTKMIQNLVWATGYNVLAVPLAAGVLAPIGFVLSPAVGAILMSASTIVVALNAQLLRR INLDPGHLAPLGAPRPEAALQPATS >gi|289558432|gb|ADCD01000020.1| GENE 14 13321 - 14004 444 227 aa, chain + ## HITS:1 COG:Cgl2899 KEGG:ns NR:ns ## COG: Cgl2899 COG3544 # Protein_GI_number: 19554149 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Corynebacterium glutamicum # 1 227 1 220 220 215 69.0 5e-56 MKRTMTLTALALASALTLTACGTGAQDENAGAEASATATSSAPAATPAATATATPSTTAT GSAEEVSAEHNDADVMFAQMMIPHHQQAVEMSEMLLAKDDVPAEVAAFAQKVIDAQGPEI KRMNSMLTAWGQDPVDTDGMDGMEGMDHGGMSGMMSEEDMTALDQAQGTEAARLYLEQMT AHHKGAVDMAKDEAKDGQNPQAVQLAEQVIADQEAEITEMQQMLDKL >gi|289558432|gb|ADCD01000020.1| GENE 15 14093 - 15148 853 351 aa, chain + ## HITS:1 COG:PH1830 KEGG:ns NR:ns ## COG: PH1830 COG0057 # Protein_GI_number: 14591580 # Func_class: G Carbohydrate transport and metabolism # Function: Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase # Organism: Pyrococcus horikoshii # 4 339 2 332 334 277 43.0 3e-74 MQDKIKVAVNGYGVIGKRVADAVRAQEDMALVGVSDVIADYRIATAAGKGIPVYASTEQA LPVMADAGLPVVGGLHDLLENVDVVVDCTPAQVGAGNLELYRAHGVKSVFQGGEKHDLTG HSFVAHANYATALGRDSTRVVSCNTTATVRALTALKDVGLLSKARGVLIRRATDPWESDH SGIMNTIVPEGRIPSHQGPDAQSVVPDLDVVTMAAKGAHTQNHLHYWTIELTRPAEKQEV LEAFRAMPRIAFVRRSDGVVAVNSTVELMEDLGRPRGDMYEVALWEDILTVDGNELYYTY TVDNQAIVVPENIDAIRALTGTVDDGGESIRRTDRALGVRQDFVRSSVAAR >gi|289558432|gb|ADCD01000020.1| GENE 16 15255 - 16139 414 294 aa, chain - ## HITS:1 COG:slr0943 KEGG:ns NR:ns ## COG: slr0943 COG3588 # Protein_GI_number: 16330995 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1,6-bisphosphate aldolase # Organism: Synechocystis # 2 294 7 300 300 332 57.0 4e-91 MDSEKYQRVRNGAGFVAALDQSGGSTSAALHLYGIDKDAYSGPEEMFDLVHQVRTRIITS PSFDGERVMGAILFENTMNRQVEGSPTGDYLWNSKGIVPFLKIDQGLAPEQQGAQLMKPI PHLDDLLSRAVEKHMFGTKMRSVIKLPGDGVGSVVEQQFGLARQILVTGLVPIIEPEVDI RSPRKAEVEDQLKAAILAQLDKLGDDQSVILKVTLPERADFYREIVDHPRVIRVLALSGG YTRAQATTLLARNHGVIASFSRALTEGLSTAQSPAQFNAVLDEAINAIATASRT >gi|289558432|gb|ADCD01000020.1| GENE 17 16236 - 16646 269 136 aa, chain - ## HITS:1 COG:no KEGG:Mlut_18430 NR:ns ## KEGG: Mlut_18430 # Name: not_defined # Def: protein of unknown function (DUF326) # Organism: M.luteus # Pathway: not_defined # 1 136 1 136 136 188 100.0 6e-47 MTHHVSAMLDTYPKNVGNIDRQKLAECIQACFECAQTCTACADACLAEDMVADLRQCIRL NLDCADVCAATGRMLSRQTGNNVETTRALLEACRAACKTCGDECESHAQMHEHCKVCAEA CRRCEQACADLLVTLG >gi|289558432|gb|ADCD01000020.1| GENE 18 16938 - 17540 396 200 aa, chain - ## HITS:1 COG:no KEGG:Mlut_18440 NR:ns ## KEGG: Mlut_18440 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 4 200 120 316 316 350 98.0 2e-95 MSTKLTADPEAKAERRRKVLVGAGALTAIAVVGGLVTLAVIQNPPPQAREDIEIAGLQTF EGLSANHVSTPVDYEQSPPVGGDHASAWLNCGVYTEPVPNENAVHALEHGAAWVAYDSEA LSQEQVDALRTALPAAYVVLAPYEGLDSPIVLSAWQAQVAVDSPEDERIEQFVAEYWQSP DAPEPGAACTGGLDAPGRIA >gi|289558432|gb|ADCD01000020.1| GENE 19 17583 - 17882 282 99 aa, chain + ## HITS:1 COG:no KEGG:Ksed_23460 NR:ns ## KEGG: Ksed_23460 # Name: not_defined # Def: transposase # Organism: K.sedentarius # Pathway: not_defined # 1 99 1 99 99 130 76.0 2e-29 MPAAYPREFRQDVVAIARKGQMPIAQVAKDFGIAESCLRRWLAQDDVEAGIRPGITKAEN EELKALKRRNRELEMENEVLRRAAAYLSQANLKLGQSPK >gi|289558432|gb|ADCD01000020.1| GENE 20 17879 - 18379 350 166 aa, chain + ## HITS:1 COG:AGpA535 KEGG:ns NR:ns ## COG: AGpA535 COG2801 # Protein_GI_number: 16119596 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 15 166 14 167 286 75 30.0 5e-14 MTYPVVKDLARDGIPVKLSCRVLGFSRQAYYQWLAEPVSEREWSDAHAANAALDAHADDP EFGYRFLADELRGRGLAVSDHQVLKACRLVKVRCCHSIRRGSGKRPGPAVHDDLVRREFR AEKPNQLWLTDISEHWAGDSKLYLCAVKDVFSNRIVGYSIDRRMSS >gi|289558432|gb|ADCD01000020.1| GENE 21 18401 - 18760 127 119 aa, chain + ## HITS:1 COG:mlr6150 KEGG:ns NR:ns ## COG: mlr6150 COG2801 # Protein_GI_number: 13475138 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Mesorhizobium loti # 1 108 176 280 286 73 41.0 9e-14 MALARRGGKAEVQGCRVHSDRGSQFRARRFVETLRVNGLVGSMDRVGAAGDNAAMESFFA LLQKNVLNRRRWESFDQLRLAIVSWIERTYHRRRRQARLGRLTPVEFEMVQSVQAAAAA >gi|289558432|gb|ADCD01000020.1| GENE 22 19035 - 19409 109 124 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVGAGVSARLPRLDSNQQPFAYAGKSYGARQLDSSRLIRVTHCAGTHAFRGAASGAGIQC RSTCVRDHRAAFASTTSSGSFTRTYGSRRYGALPISSTDCHAGPSNTSTPPASTSRGNIT AWTG >gi|289558432|gb|ADCD01000020.1| GENE 23 19637 - 20122 260 161 aa, chain + ## HITS:1 COG:no KEGG:Sked_33280 NR:ns ## KEGG: Sked_33280 # Name: not_defined # Def: hypothetical protein # Organism: S.keddieii # Pathway: not_defined # 30 160 43 170 304 75 42.0 4e-13 MRSAAVAWLVEAGVDPAVFHPRQSPVFSENSFSAGRDDVDDLWRTGARISWLGGPAVSLG GWPRTAAGSAMAHVATFHLGDAHAALGDPKERGWPDEAAELLPEDGYIQVFHDLETYGYE PDDVEARGWLVTWHADDPSQARPPLVECDDDSNAVKPHEVV >gi|289558432|gb|ADCD01000020.1| GENE 24 20147 - 21400 775 417 aa, chain - ## HITS:1 COG:MT2587 KEGG:ns NR:ns ## COG: MT2587 COG3328 # Protein_GI_number: 15842041 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Mycobacterium tuberculosis CDC1551 # 1 413 22 434 436 531 65.0 1e-150 MTAPHIVDPAGLLGEALSEASPDMMRHLLQTMINTLLCADADAVVGAEWGKPSRDRTAQR NGYRHRDLDTRVGTVDVAIPKLRSGTYFPEWLLERRKRAESALITVVADCYLAGVSTRRM DKLVKTLGINALSKSQVSRMAADLDEQVEAFRHRPLGEAGPFTFVAADALTMKVREGGRV VNAVVLIATGVNGDGHREVLGLRVATSETGAAWNEFFADLVARGLAGVRLVTSDAHPGLK DAIAANLPGAVWQRCRTHYAANLMGITPKSMWPAVKAMLHSVYDQPDAASVNAQFDRLLD YVSEKLPVVAEHLDAARADILAFTTFPKDVWTQIWSNNPAERLNREIRRRTDAAGIFPNR AAIVRLVGAVLAEQTDEWAEGRRYLGLEVLARCRLTTVSNTGSEVNPDTAPALEFSA >gi|289558432|gb|ADCD01000020.1| GENE 25 21799 - 22443 288 214 aa, chain - ## HITS:1 COG:Rv3832c KEGG:ns NR:ns ## COG: Rv3832c COG0500 # Protein_GI_number: 15610968 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Mycobacterium tuberculosis H37Rv # 33 213 11 187 191 83 35.0 3e-16 MGRPDSVGGPGPADRPCWRLPMPKMSGIETAFCRSALWGRFARDIIVPWSLGGQDLGGDV LELGAGSGQMAAALLQRSPGMRLTLTDIDERMVATARRRFPTSPRLTVQQADSTALPFAE SSFDVVLSFLMLHHVVNWKAAVAEAARVLKPGGMLIGYDLTASPTATLLHLVDRSPHQLV APADLAATARHVGLDVSIRTGWAGHVMRFLAHKH >gi|289558432|gb|ADCD01000020.1| GENE 26 22651 - 24018 926 455 aa, chain + ## HITS:1 COG:YPO1981 KEGG:ns NR:ns ## COG: YPO1981 COG1541 # Protein_GI_number: 16122223 # Func_class: H Coenzyme transport and metabolism # Function: Coenzyme F390 synthetase # Organism: Yersinia pestis # 6 404 7 377 428 112 28.0 1e-24 MTESRLWLLCDARAAHRQGRAGLDRRRHERLVEMVSFARARSPFYRRLYQHLPEQLTDPV LLPVTGKAELMRHFDDWVTDRAVTLSAARAFVEDPALVGEKFLGRYTVGTTSGTTGTRGI FLWDERSLAVTTALLARLLGTWLTPADVLRMLARGGRIAMVNATGGHYASAAAAAALRKN RWGSDRIGVFGVHTPMAQLVAGLNDFRPAILAPYATMGALLAAEQRAGRLHINPALVVLS AEALPEGEYDRIAATFNAKVRQGYAATECPFLTYSCQHGWLHVNSDWVLLESVDADHRPV PPGQPSHTTLLSNLANKVQPILRYDLGDAVFVRPDPCPCGDPLPAIRVRGRTADLLTFHT PAGEPVVLTSLTVTAWVDRVPGVELVQLVHTAPTHLEVRMQFSAGTDPERLWQAVHTEIR RLLVDHGLGHVTVARGDGPPQPTPGGKFRAVIPLP >gi|289558432|gb|ADCD01000020.1| GENE 27 24394 - 25722 825 442 aa, chain - ## HITS:1 COG:no KEGG:Trad_0629 NR:ns ## KEGG: Trad_0629 # Name: not_defined # Def: cytochrome P450 # Organism: T.radiovictrix # Pathway: not_defined # 9 437 2 437 441 383 48.0 1e-105 MPGATPIGDEAEVPTLGAVDHLRVLTRVLLGPVVKGPIVRRPAAVGLAERLDADAAGVAE MQRLRSRYGAGPVQLRIPGRRIALLLDPADVRRVLNDSPTPFSPATLEKRGALNHFEPAG SLVSTPQQRLSRRPFNEQILETPRPVHSHAEAMKAVITEEVSTLGGHVDFTGTLDWESFA VMWARMVRRIVLGASARDDDQVTDDLRRLRARGNFSYLMPQNRRLRERFLRRLQHYIELA EPGSLAALVAQTPAPDEAVPHQQVPQWLFAFDAEAWATFRALALLTNHPGATGTARSEVA HAPDLPFLRATVLESLRLWPTTPLILRDSTATTHWRNGTLPPDTALVIYAPFFHRDDQTL PQAHRFSPELWLQERDDNAWPLVPFSAGPGMCPGRNVVLLTSSLVLGELLRQHDFTAQEP LDTGQLPGTLSPFSSHFTVRHD >gi|289558432|gb|ADCD01000020.1| GENE 28 25845 - 26216 115 123 aa, chain - ## HITS:1 COG:MT1591 KEGG:ns NR:ns ## COG: MT1591 COG0597 # Protein_GI_number: 15841006 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Lipoprotein signal peptidase # Organism: Mycobacterium tuberculosis CDC1551 # 1 118 67 184 202 77 40.0 4e-15 MGDLLGLQLAYNPGAAFSLGATSTWIFTVISAVAVAAAIWFSLRVRTVSWALLVGCLGGA VTSHLGDRLLRPPSFGQGHVVDFLAYGNWFIGNVADIFIVGGAAAAVLLTATSPDRDTAD TPQ Prediction of potential genes in microbial genomes Time: Thu May 26 06:59:17 2011 Seq name: gi|289558341|gb|ADCD01000021.1| Micrococcus luteus SK58 ctg1119142780303, whole genome shotgun sequence Length of sequence - 100679 bp Number of predicted genes - 85, with homology - 83 Number of transcription units - 43, operones - 20 average op.length - 3.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 21/0.000 - CDS 27 - 1532 1409 ## COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) 2 1 Op 2 31/0.000 - CDS 1529 - 3145 431 ## PROTEIN SUPPORTED gi|163737840|ref|ZP_02145257.1| 30S ribosomal protein S4 3 1 Op 3 . - CDS 3154 - 3450 229 ## COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit 4 2 Op 1 . - CDS 3655 - 4179 462 ## Mlut_05970 acetyltransferase 5 2 Op 2 . - CDS 4176 - 4658 374 ## Mlut_05960 hypothetical protein 6 2 Op 3 . - CDS 4655 - 5572 707 ## COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family 7 2 Op 4 . - CDS 5569 - 7962 1910 ## COG0272 NAD-dependent DNA ligase (contains BRCT domain type II) 8 2 Op 5 . - CDS 8003 - 8620 526 ## COG0631 Serine/threonine protein phosphatase 9 3 Op 1 . - CDS 8773 - 9912 1008 ## COG2114 Adenylate cyclase, family 3 (some proteins contain HAMP domain) 10 3 Op 2 . - CDS 9909 - 10409 364 ## Mlut_05910 hypothetical protein 11 3 Op 3 . - CDS 10467 - 12404 817 ## COG0340 Biotin-(acetyl-CoA carboxylase) ligase 12 4 Tu 1 . + CDS 11493 - 13076 1393 ## COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) 13 5 Op 1 . + CDS 13181 - 13360 119 ## 14 5 Op 2 . + CDS 13396 - 15084 1626 ## COG4805 Uncharacterized protein conserved in bacteria 15 5 Op 3 . + CDS 15081 - 15776 492 ## COG0424 Nucleotide-binding protein implicated in inhibition of septum formation 16 6 Op 1 . + CDS 15941 - 17797 1560 ## COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit 17 6 Op 2 . + CDS 17969 - 19414 1499 ## COG0477 Permeases of the major facilitator superfamily + Term 19484 - 19539 21.7 18 7 Tu 1 . - CDS 19536 - 21059 544 ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 19 8 Op 1 3/0.222 + CDS 20923 - 21885 782 ## COG0005 Purine nucleoside phosphorylase 20 8 Op 2 . + CDS 21885 - 23615 1396 ## COG1109 Phosphomannomutase 21 8 Op 3 . + CDS 23636 - 24325 641 ## COG0274 Deoxyribose-phosphate aldolase + Term 24423 - 24461 -0.6 22 9 Tu 1 . - CDS 24306 - 25322 373 ## 23 10 Op 1 . + CDS 24864 - 25835 797 ## Mlut_05570 acetyltransferase, fucose-4-O-acetylase 24 10 Op 2 . + CDS 25832 - 26773 629 ## Mlut_05530 hypothetical protein 25 11 Op 1 . + CDS 27171 - 28289 622 ## RMDY18_15750 dioxygenase related to 2-nitropropane dioxygenase 26 11 Op 2 . + CDS 28360 - 28611 235 ## gi|289704874|ref|ZP_06501291.1| conserved hypothetical protein + Term 28734 - 28773 0.8 27 12 Op 1 . - CDS 28618 - 32274 3250 ## COG1197 Transcription-repair coupling factor (superfamily II helicase) 28 12 Op 2 . - CDS 32271 - 33335 813 ## Mlut_05550 hypothetical protein 29 13 Op 1 . + CDS 33667 - 34047 370 ## Mlut_05540 hypothetical protein 30 13 Op 2 . + CDS 34137 - 34706 385 ## COG0394 Protein-tyrosine-phosphatase 31 14 Op 1 22/0.000 - CDS 34752 - 35246 481 ## COG0193 Peptidyl-tRNA hydrolase 32 14 Op 2 . - CDS 35335 - 35973 1012 ## PROTEIN SUPPORTED gi|239917085|ref|YP_002956643.1| ribosomal protein L25, Ctc-form 33 15 Tu 1 . - CDS 36159 - 38867 1348 ## RMDY18_15800 ABC-type Mn2+/Zn2+ transport system, permease component 34 16 Tu 1 . + CDS 38676 - 39041 179 ## COG0489 ATPases involved in chromosome partitioning + Term 39060 - 39095 9.5 - Term 39048 - 39083 9.5 35 17 Op 1 11/0.000 - CDS 39103 - 40518 1132 ## COG1091 dTDP-4-dehydrorhamnose reductase 36 17 Op 2 . - CDS 40532 - 42337 1241 ## COG1088 dTDP-D-glucose 4,6-dehydratase 37 18 Tu 1 . + CDS 42239 - 42496 199 ## gi|289704885|ref|ZP_06501302.1| hypothetical protein HMPREF0569_0652 38 19 Tu 1 . + CDS 42981 - 43598 195 ## gi|289704886|ref|ZP_06501303.1| hypothetical protein HMPREF0569_0653 39 20 Tu 1 . + CDS 43773 - 44777 279 ## RMDY18_03700 GTPase-activating protein 40 21 Op 1 7/0.000 - CDS 44805 - 45737 316 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 41 21 Op 2 . - CDS 45734 - 46246 249 ## COG0110 Acetyltransferase (isoleucine patch superfamily) 42 21 Op 3 . - CDS 46243 - 46935 317 ## gi|289704889|ref|ZP_06501306.1| glycosyltransferase, group 2 family protein 43 22 Tu 1 . + CDS 47292 - 48161 742 ## COG1209 dTDP-glucose pyrophosphorylase 44 23 Op 1 . - CDS 48166 - 49287 736 ## COG0438 Glycosyltransferase 45 23 Op 2 . - CDS 49297 - 50292 653 ## RMDY18_15780 cell wall biogenesis glycosyltransferase 46 23 Op 3 1/0.333 - CDS 50276 - 51313 671 ## COG0438 Glycosyltransferase 47 23 Op 4 1/0.333 - CDS 51310 - 52455 682 ## COG1835 Predicted acyltransferases 48 23 Op 5 . - CDS 52452 - 53573 696 ## COG0438 Glycosyltransferase 49 23 Op 6 2/0.222 - CDS 53582 - 55753 1911 ## COG2089 Sialic acid synthase 50 23 Op 7 . - CDS 55822 - 56613 523 ## COG1083 CMP-N-acetylneuraminic acid synthetase 51 23 Op 8 . - CDS 56610 - 57731 666 ## RMDY18_15850 predicted RNA-binding protein 52 23 Op 9 . - CDS 57728 - 58789 869 ## RMDY18_15870 hypothetical protein 53 23 Op 10 . - CDS 58786 - 59709 794 ## COG1216 Predicted glycosyltransferases 54 24 Tu 1 . + CDS 59910 - 61004 629 ## Mlut_05500 hypothetical protein 55 25 Op 1 . - CDS 61058 - 61810 532 ## COG0681 Signal peptidase I 56 25 Op 2 11/0.000 - CDS 61813 - 62895 875 ## COG0462 Phosphoribosylpyrophosphate synthetase 57 25 Op 3 . - CDS 62912 - 64405 1344 ## COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) - TRNA 64440 - 64514 53.3 # Gln TTG 0 0 58 26 Tu 1 . - CDS 64579 - 66033 1161 ## COG2148 Sugar transferases involved in lipopolysaccharide synthesis 59 27 Op 1 1/0.333 - CDS 66214 - 68055 1473 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains 60 27 Op 2 . - CDS 68121 - 69089 796 ## COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase 61 28 Tu 1 . + CDS 69122 - 73141 1608 ## gi|46203980|ref|ZP_00209196.1| hypothetical protein Magn03004581 62 29 Tu 1 . - CDS 72988 - 74475 1436 ## COG1012 NAD-dependent aldehyde dehydrogenases 63 30 Tu 1 . - CDS 74659 - 75543 536 ## COG0313 Predicted methyltransferases 64 31 Op 1 . + CDS 75479 - 76483 714 ## CA2559_07255 hypothetical protein 65 31 Op 2 . + CDS 76530 - 78152 1388 ## COG1928 Dolichyl-phosphate-mannose--protein O-mannosyl transferase 66 32 Tu 1 . + CDS 78269 - 80059 1609 ## COG1022 Long-chain acyl-CoA synthetases (AMP-forming) 67 33 Tu 1 . + CDS 80225 - 81253 844 ## COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family 68 34 Op 1 . - CDS 81339 - 82559 1081 ## Mlut_05320 integral membrane protein TIGR01906 69 34 Op 2 . - CDS 82607 - 84166 1506 ## COG0499 S-adenosylhomocysteine hydrolase 70 34 Op 3 . - CDS 84212 - 84514 249 ## Mlut_05290 hypothetical protein 71 35 Tu 1 . + CDS 84577 - 85122 430 ## Mlut_05280 hypothetical protein 72 36 Tu 1 . - CDS 85178 - 85705 471 ## Mlut_05270 transcription factor WhiB 73 37 Op 1 . + CDS 85876 - 86499 421 ## Mlut_05260 hypothetical protein 74 37 Op 2 29/0.000 + CDS 86551 - 88455 1056 ## COG0026 Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) 75 37 Op 3 . + CDS 88452 - 89009 517 ## COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase 76 37 Op 4 . + CDS 89009 - 90622 1230 ## COG1316 Transcriptional regulator 77 37 Op 5 . + CDS 90664 - 91908 1086 ## COG1482 Phosphomannose isomerase 78 38 Tu 1 . - CDS 91932 - 92954 960 ## COG1494 Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins 79 39 Op 1 . + CDS 93062 - 93652 426 ## Mlut_05190 hypothetical protein 80 39 Op 2 . + CDS 93649 - 94320 544 ## COG0288 Carbonic anhydrase 81 39 Op 3 . + CDS 94376 - 95797 1411 ## COG0114 Fumarase 82 40 Tu 1 . - CDS 95888 - 96391 419 ## Mlut_05160 type IV leader peptidase - Term 96579 - 96628 2.5 83 41 Tu 1 . - CDS 96735 - 98183 1304 ## COG1875 Predicted ATPase related to phosphate starvation-inducible protein PhoH 84 42 Tu 1 . + CDS 98411 - 99052 520 ## COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid) 85 43 Tu 1 . - CDS 99031 - 100677 943 ## COG0020 Undecaprenyl pyrophosphate synthase Predicted protein(s) >gi|289558341|gb|ADCD01000021.1| GENE 1 27 - 1532 1409 501 aa, chain - ## HITS:1 COG:MT3089 KEGG:ns NR:ns ## COG: MT3089 COG0064 # Protein_GI_number: 15842567 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) # Organism: Mycobacterium tuberculosis CDC1551 # 6 499 14 507 509 566 60.0 1e-161 MSHAEQTMDFAEAMERFDPVLGFEVHVELNTATKIFSSAPNAFGDEPNTNVTPLDLGLPG TLPVLNREVVEYAIRLGVALDAQVAETCRFARKNYFYPDTPKNFQTSQYDEPIVFDGHLD VELEDGEVFRVEIERAHLEDDAGKLTHVGGSGRIQGASASLVDYNRAGVPLIEIVTKPIV GAGARAPELARAYVTAIRDIVQAIDISDARMERGNVRCDANVSLMPKGATEFGTRTETKN VNSTRAVQHAVTHEIQRQAAVLAAGGTVTQETRHWHEDTRSTTSGRPKSDADDYRYFPEP DLVPVHVDAAWVERVRAAMPELPAVRNKRLKAEWGFADEEFRDVVNAGVLDEIVATVEAG ASAAAARKWWMGEIARLANVREVAVAELGITPAHVVEVEELIAAKTINDKIAKQVLGLVA DGEGAPKEIVAAKGLAVVSDDGALTEAVDAAIAANPDVAEKIKGGKMAAVGALIGPVMKA TRGQADAGRVREIVLERLGVS >gi|289558341|gb|ADCD01000021.1| GENE 2 1529 - 3145 431 538 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163737840|ref|ZP_02145257.1| 30S ribosomal protein S4 [Phaeobacter gallaeciensis BS107] # 20 492 8 441 468 170 33 2e-41 MTETFDVNATLGADELVRLTALQMAERLRAGTTTSVELVQAHLDRIAAHDGDVSADADGD RGVRAYLHVNTDEALAVAAEVDAIRAAGGPEADALHPLAGVPVAVKDNIVTRGQPTTAAS RMLEGWLSPYDATVVARLREARLPILGKTNLDEFAMGGSTEHSAFGITRNPWDGDRVPGG SGGGSAAAVAAFLAPFALGSDTGGSVREPAAFTGTVGVKPTYGAVSRYGLIAMASSLDQI GPAARTVADAAALQQVIAGHDPQDSTSLADAPADLTGAARGRDLAGLRVGVVTDLPADAF HPGIRAGFDEHVAALREAGAEIVEVSCPSFDAALGAYYLIMPSEATSNLARFDGVRYGHR VVPDGGGTIEQVMGATRAAGFGAEVKRRIILGTYALSAGYYDAYYGSAQKVRTLVQEDFA RAFEQVDVILTPTAPTPAFELGAKTDDPMTMYVNDLATIPANLAGIPGMSVPGGVVDGLP YGLQLMAPAREDARLYEAGAALERLVGERRGGPVWAEAPELEKGAQRATTATTAGGRA >gi|289558341|gb|ADCD01000021.1| GENE 3 3154 - 3450 229 98 aa, chain - ## HITS:1 COG:MT3092 KEGG:ns NR:ns ## COG: MT3092 COG0721 # Protein_GI_number: 15842570 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit # Organism: Mycobacterium tuberculosis CDC1551 # 1 98 1 98 99 79 48.0 2e-15 MPEITRDQVEHLARLAHIRMTDEELDTMSGDLEKILEHVSAVQAAAGDDVTPTSHPIALE NVFREDVPAGMLTQEEALDQAPDSEDGQFKVPAILDGE >gi|289558341|gb|ADCD01000021.1| GENE 4 3655 - 4179 462 174 aa, chain - ## HITS:1 COG:no KEGG:Mlut_05970 NR:ns ## KEGG: Mlut_05970 # Name: not_defined # Def: acetyltransferase # Organism: M.luteus # Pathway: not_defined # 1 174 1 174 174 304 99.0 9e-82 MSALVRPLRPEDHEAVAELTLASYVDGGHIAPDDAYVKTLMDVADRAGRAEVLVAEVDGE VAGSVVLTPPGSPLAETSGDGEYEFRMLAVHPRFHRRGVGGALLAEIVARARAEEGVDAV VLTTMPSMTGAHRMYERAGFVRVPERDWLLADVVPDLDPADETGPFLVYRLALD >gi|289558341|gb|ADCD01000021.1| GENE 5 4176 - 4658 374 160 aa, chain - ## HITS:1 COG:no KEGG:Mlut_05960 NR:ns ## KEGG: Mlut_05960 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 160 1 160 160 278 95.0 5e-74 MRRIVGDPWFYPVLFVAGGLTFMIAGTRLQQVGMIVAGLVLAGYAVTYRWAVRVRSRPFT GAQAHVERGGVVVFWRPGCPFTRRLVKELTAQERERAYWVNIWQEPAAATFLAGLHEARD GHPHQAVPTAWLRRRDYVVATDATRARLKDTLRQRAEVDA >gi|289558341|gb|ADCD01000021.1| GENE 6 4655 - 5572 707 305 aa, chain - ## HITS:1 COG:Cgl1863 KEGG:ns NR:ns ## COG: Cgl1863 COG0483 # Protein_GI_number: 19553113 # Func_class: G Carbohydrate transport and metabolism # Function: Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family # Organism: Corynebacterium glutamicum # 47 276 40 243 280 113 37.0 5e-25 MSARTTVPGLLVVAKAAARAGADVLARRWTGHHPAVPLGVEEIGAQTKSSGSDWVTDYDR RAEQAVREVIAGYRASDEITGEEYGATRPAEPSGYRWSIDPLDGTTNFVRGLPQFCTSVG VTGPVDAETADLLGVAEGTERWLAGVVAAPALGRTWFASAGRGAFSTADATTAGVDVPDR DAAPVRLTGPVPGRSGRLLATGFGYDPARRALQVQALAALLPAFGDVRRIGSAALDLCMV ADGTLDAYAEFGTQEYDWAAGALVAEEAGVAVTRPASADGTAHPDWMVAGDVDAAALAAV TGETA >gi|289558341|gb|ADCD01000021.1| GENE 7 5569 - 7962 1910 797 aa, chain - ## HITS:1 COG:Cgl1215 KEGG:ns NR:ns ## COG: Cgl1215 COG0272 # Protein_GI_number: 19552465 # Func_class: L Replication, recombination and repair # Function: NAD-dependent DNA ligase (contains BRCT domain type II) # Organism: Corynebacterium glutamicum # 19 775 6 677 680 658 51.0 0 MSTPKESAAQPDPQDIPAADLRAEYEDLVERVRAARTAYYQRDAPEISDAEYDALYRRLE DLEALHPELVSNDSPTQEVGGEVSEAFAPVRHGARMYSLEDVFSIEELEVWFRRAAQALT QVRPGVAPRWLVEVKIDGLAVALRYRDGRLVQAATRGDGVTGEDVTANVRTIGDIPHELS GEGWPAEFEVRGEVFMSSAAFAELNARRAEEGQTPFANPRNAAAGALRQKDPAVTAQRPL AMFVHGIGSVEAFGLESQHEVYDALAGWGLPVSPYTRRVEGADEEALAAVVAVIEEYGRR RHELIHEIDGIVLKADAFADQRYLGHTSRVPRWAVAYKYPPEEVHTLLRDIAVSVGRTGR VTPFAVMEPVTVAGSTVSLATLHNQDVVKAKGVLIGDTVVVRKAGDVIPEVVGPVLPLRE KAIEAGRELREFVMPTHCPSCGTPLAPAKEGDVDLRCPNARSCPAQLAGRVEHLASRGAF DVEALGEEAARWLVQGPGEDPAEHEGQVRPEGPGPITAEAQIFDLASGTPEEITGPRGED GLTDLQRSLGEVRVWREGRTKVDGRMVPSGVFTLKPYFFTAGTAKRPSAPTANTLRLFDE LEKAKSQPLWRTLVALSIRHVGPTAARSLATAFGSMAALRAAAEAGDRDRLAEIDGVGPI IADALIEWFAEDWHREIVDRWAAAGVVMEDEQDESTPRTLEGLTVVVTGSLEGFSRDSAK EAILVRGGKASGSVSKKTDFLVAGEAAGSKLDKAQSLGVPVLDEAGFTALLAGGADAVRP ADTDDTTDGAADVEASA >gi|289558341|gb|ADCD01000021.1| GENE 8 8003 - 8620 526 205 aa, chain - ## HITS:1 COG:lin1935 KEGG:ns NR:ns ## COG: lin1935 COG0631 # Protein_GI_number: 16801001 # Func_class: T Signal transduction mechanisms # Function: Serine/threonine protein phosphatase # Organism: Listeria innocua # 1 202 38 240 252 112 37.0 6e-25 MGGHEAGEVASAAAIETLRRRAPEVLAPGTAHTPQDLGHLIHEADAAVVEAGLGRSGTTL TVLACLDTERGRWAVANVGDSRVYLRPVGSPVLQQLTVDHSAVQMLVDAGELTPAEARVH PRRNVITRALGSREALTVDVAEVPLASGDLVLLCSDGLTGELLDEEIRALIDDADTLEDA LEKLIGAALWRGGRDNVTAVLVRIP >gi|289558341|gb|ADCD01000021.1| GENE 9 8773 - 9912 1008 379 aa, chain - ## HITS:1 COG:MT1302 KEGG:ns NR:ns ## COG: MT1302 COG2114 # Protein_GI_number: 15840710 # Func_class: T Signal transduction mechanisms # Function: Adenylate cyclase, family 3 (some proteins contain HAMP domain) # Organism: Mycobacterium tuberculosis CDC1551 # 55 375 68 381 397 86 28.0 7e-17 MSRPETPDTAPLPIVPPAEDTTARDVEERSAQPAGWTSAMRTLDAGLVVGPRAYTSREVA QRLGVSMASARKIWRALGYPTSPEGHKAFTEADIEAFESVLTLVRSGTLNEDTAISLARS IGQMTDRMVVWQIEALVEDKIASEDLTDPEARRAVVDMLPDMVGPLEKAMRIVYRRQLNR AVQRLTVRVEAGLAASAEGRDGSESDAPLPLARAVGFADMVSYTTLSRTMDDRTLARMVL RFESLAAETISAGGGWLVKTIGDEVMFNAETPEAGAAIALSLAETIAADEELPSARVALT WGRVLSRMGDIYGPTVNLAARLTSLADPGTVLVDAMTAAALSRDERFVLVPQPPRIVRGF GEVRPSLLLDGSAQTLLAD >gi|289558341|gb|ADCD01000021.1| GENE 10 9909 - 10409 364 166 aa, chain - ## HITS:1 COG:no KEGG:Mlut_05910 NR:ns ## KEGG: Mlut_05910 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 166 10 175 175 219 96.0 3e-56 MVRTRTHPRALLRPAAVLVAVAFLLGLAVGVLARPDLPGIVAANRAVLEAAAWVVAALVL LTGTVRPLWRWVFRRTVVTDRRILQRAGVGSSGAAMPLVSIADVQRRRRGSGAGDLHILF QEPARQVHWRLRDVPEAARFEEALAHLTRQARTRTWPAPVPTGDLR >gi|289558341|gb|ADCD01000021.1| GENE 11 10467 - 12404 817 645 aa, chain - ## HITS:1 COG:BH1685_2 KEGG:ns NR:ns ## COG: BH1685_2 COG0340 # Protein_GI_number: 15614248 # Func_class: H Coenzyme transport and metabolism # Function: Biotin-(acetyl-CoA carboxylase) ligase # Organism: Bacillus halodurans # 377 520 12 148 254 79 31.0 2e-14 MALVHDRGDDLEHVVGLVGGVRDDLVQGEVLVRGLRVRGLEGRGLREVVGGQQLEQLLHV GDRVLLRGRHVVGGAGGGVVRASAAEGLHVHVLARDGLDHVRAGDEHVRGLVHHHHDVRQ RRRIGRAAGGGAHDQRDLRDHARGQDVVPEDVRELGEGGHALLDARAAAVEDADHGAAVA RGELLDLHDLLAVALGQRAAEDGEVLGVDGHLAPVHGAEAGHQAVAGRVLGVHAERGGAV HGQRVQLHEGALVQEEVDPLARGVLAASVLALDGVRAAGRGRRLEPPMQVGQPAGRGGQI GIGHTSSLWWSARCGGSVGQCTGRRGRPPLEEAHKRRGRRPGPPVRAPRRRIGPPSPPPG TPCISRGMHPDDAPTPDLTWLDSAGSTQDELLARLDREGHRHGAAVATADQRAGRGRHSR VWSAAPGAALALSVYLRPESGGVPISPAHLSWLSLVASATVAERLAARGVPTHVKWPNDV LATDGRKLCGVLATVALSSDGKGPGVVVGMGVNLDHRGAAPVDTATDLAEWIGADAVPAP RDLAVELRDAVVAAVDRFAAGVAGQTAAVDGHHPAVAAVADRLSTLGRAVRAELPGGGVL EGTAVGLGPGGTLRVRHVTPDRGTIETEVSAGDVAHLRGDVHRGA >gi|289558341|gb|ADCD01000021.1| GENE 12 11493 - 13076 1393 527 aa, chain + ## HITS:1 COG:Rv3280 KEGG:ns NR:ns ## COG: Rv3280 COG4799 # Protein_GI_number: 15610416 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) # Organism: Mycobacterium tuberculosis H37Rv # 5 527 21 548 548 661 64.0 0 MTDPDLTTTAGRLADLHRRLEATAAPGGPDAVERQHARGKHTARERIDLLLDEGSFVELD ALAVHRTTAFGMDAKHPAGDGLVSGFGTVDGRQVAVYSQDFTVFGGSLSERNGQKIVKVQ EFAARNGCPVIGILDGGGARIQEGVASLAQFADIFRNNVLASGMIPQISLIMGPSAGGAA YSPALTDVVVMVDQTSHMFITGPDVIKTVTGEDVDMETLGGARSHNATSGTAHYMASSEE DAIAYVQELLELLPSNNLAEAPTFEAADPEPTDEDLALDEIVPDSAHQPYDMLEVIASIV DEGHLLQLQELYAPNVITGLARLDGMSVGVVANQPMQFAGTLDIAASEKAARFVRFCDAF NIPIITLVDVPGFLPGTDQEFNGIIRRGAKLIYAYAEATVPKLTVITRKAFGGAYIVMGS KKLGADLNLAWPSAQIGVMGAQGAVNILYRRDLKATAEAGGDVDARRAEIVADYEAELLN PYQAAELGYVDAVVPPHATRGQLIRALRATLHKREARPAKKHGNMPL >gi|289558341|gb|ADCD01000021.1| GENE 13 13181 - 13360 119 59 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MAALAAVLEAAAAARAEAARLAAEAADPRPLDRTLRRRGDLGLWARPGRGQWRQGAGPQ >gi|289558341|gb|ADCD01000021.1| GENE 14 13396 - 15084 1626 562 aa, chain + ## HITS:1 COG:Cgl0137 KEGG:ns NR:ns ## COG: Cgl0137 COG4805 # Protein_GI_number: 19551387 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Corynebacterium glutamicum # 14 559 9 549 553 393 41.0 1e-109 MTQHTSEAAADGARTPSAIDALAERYVTDLLALHPDTATELGFPGRETEYTDFSPAGARA DDELNARLLEELAALEPQDETDRVTKAAMQERIGLEREIHATGRTELNNIASPAQGIRAV FDLMPTDTAEQWGHIAGRLENLPAALRGYTESLLASRDAGHVAAVRQVDIVVEQARAHGA AGGFFPGLVERAEAADVVDDALAARIRSGADAAAQAYRDFADTLEAELRPHAPEADGVGI EYYRLASRVFLGAEIDLEETYRWGQEELARIIAAQQADAERIRPGATIEEARAILDADPE RTLKGTEALRSWMQRLSDDAVEAMKEHFEIPAPMDRLECMIAPTQEGGIYYTGPSDDFSR PGRMWWSVPPGEDEFTTWAETTTVYHEGVPGHHLQIATAMMNRENLNLWRRSFCWTSGHG EGWALYAEKLMEELGFLDDPGDHLGMLDMQRMRAARVVFDIGYHCGFDAPESEGGGAWTP EKGYAFLAKHLRISEGQRRFEFTRYLGWPGQAPAYKVGQRIWEQIRAEHEQAEGAEFDLK AFHTRALRLGGMGLDTLREALA >gi|289558341|gb|ADCD01000021.1| GENE 15 15081 - 15776 492 231 aa, chain + ## HITS:1 COG:MT3381 KEGG:ns NR:ns ## COG: MT3381 COG0424 # Protein_GI_number: 15842873 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Nucleotide-binding protein implicated in inhibition of septum formation # Organism: Mycobacterium tuberculosis CDC1551 # 16 224 3 210 222 119 42.0 3e-27 MIPHDDGAAGPGAGLRLVLGSASPGRAEVLTRARVPFRVVVSGVDEAAVGAAAGDPSPAE LAGLLAEAKGRDVAACVAAAGVEAPTLVLGCDSVFEFEGRAHGKPYEPEVAVERWRAQAG REGVLHSGHWLGLVLPEPGAGSGVAAEAGVVSAVVRFGAVTEAEIQAYVATGEPLHCAGA FTVDGAGAALVDGVDGDPNAVIGLSVAWLRRAMAALGQDVTRLWEPSNAQR >gi|289558341|gb|ADCD01000021.1| GENE 16 15941 - 17797 1560 618 aa, chain + ## HITS:1 COG:ML0726 KEGG:ns NR:ns ## COG: ML0726 COG4770 # Protein_GI_number: 15827304 # Func_class: I Lipid transport and metabolism # Function: Acetyl/propionyl-CoA carboxylase, alpha subunit # Organism: Mycobacterium leprae # 19 614 5 597 598 653 63.0 0 MSIADAPQASVVPPVDPAAERRFSRVLIANRGEIAVRIIRACQDEGLTSVAVYAEPDRDA LHVRLADEAVALGGETAADSYLVIGKILDAAERAGADAVHPGYGFLSENADFARAVTDAG LVWIGPPAEAIDRLGDKVSARQLATKVGAPLAPGTTSPVTGTEEVVAFADEFGLPVAIKA AYGGGGRGIKVARTREEIPEFYESAVREAVAAFGRGECFVERFLDKPRHVETQCLADVHG DVVVISTRDCSLQRRNQKLVEEAPAPFLTDEQNARLVESSKAILQEAGYVGAGTCEFLVG QDGTISFLEVNTRLQVEHPVSEEITGIDLVREQFRLARGEALGYTDPQPRGHSIEFRLNG EDPGRNFLPAPGRLTTFRMPSGPGVRVDSGVVEGETVSGAFDSMVAKLIVTGADRRQALQ RAARALREAEIVGMPSVLPFHRAVVRDPAFAPEIAGSEEPFSVHTRWIETEFANHIEPSA LTPAEPAPREARHTVTVEVNGKRVDVTLPTWGEALHTISGAAQRAGAGRRRPRGKRGVPV AAAVSTDALTAPMQGTVVKVAAENGQTVAEGDLIVVVEAMKMEQPLAAHRAGVVSGLEVE PGQTVTAGTVVATIADAE >gi|289558341|gb|ADCD01000021.1| GENE 17 17969 - 19414 1499 481 aa, chain + ## HITS:1 COG:Cgl1432 KEGG:ns NR:ns ## COG: Cgl1432 COG0477 # Protein_GI_number: 19552682 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Corynebacterium glutamicum # 3 471 6 462 462 448 58.0 1e-125 MSHSTPPVNSGAPTATTDLTSNAVAAAEEVPRSRVIIASLVGTSIEFYDFYIYATAAVSV FPLIFFAGGDDNTALLASMATFGAAFVARPLGAVVFGHLGDRVGRKTTLIGSLLTMGIAT FLIGLLPTYFQIGLWAPAMLTLLRFFQGLGLGGEWSGAALLATEYAKDGKRAQAAMWPQL GAPIGFLLANGLFLTLVLGFDHDSTSPVLDGPFLTWVWRLPFLLSIVMVAVGLYVRVKLE ETPVFQRALDRDQRVKAPLGEVFRRNWWELILGTFVMYATYVLFYLMTTWILSYAIGKPA NGFLGVPYAEFLVLQLVGILFFAAFVPVSGLLADRFGRRPTLIVISVLMVLFGLSFGLWL SPENMGVGAELNVPLMLAFLATGMTLMGLTFGPMSAVLPELFPTNTRYTGSGIAYNVSSI LGAALTPFIAAWLVQRFDVSYVGYYLAAASAITVIALALSPETRHTDLDTVTSARERRAA R >gi|289558341|gb|ADCD01000021.1| GENE 18 19536 - 21059 544 507 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 43 499 6 447 458 214 28 2e-54 MLVWSVTSWSLGGVPWPRARTFPSAADTMEPVTEENSTFIPSLTIIGGGPGGYEAAMVAA KLGARVTLVERQGVGGAAVLTDVVPSKTLIAAADSMRRVGASVDLGVDLGGAEAHADMGR VGHRILNLAHEQSSDIRAGLARVGVRVIDGVGRVVGPHEVSVRALDDADAGAEPEIITSD AILVAVGASPRELPTAVPDGERIFNWKQVYNLKELPEHLIVVGSGVTGAEFASAYNRLGA KVTLVSSRDRVLPGEDADAAELLEKVFEGNGLRVVSRSRAESVERTETGVRVHLSGEGAE DTPSIEGSHALVAVGGVPNTAGLGLDDVGVKLSGSGHVLVDGVSRTSVPSIYAAGDCTGK LALASVAAMQGRIAVAHLLGDALKPLRPHLLASNIFTSPEIATVGVSQAQVDSGQYQADV LRLDFHTNPRAKMSGAEEGFVKIFARQGSGTVIGGVVVSPRASELIYALALAVTHKLHVD DLADTFTVYPSMSGSIAEAARRLHVRI >gi|289558341|gb|ADCD01000021.1| GENE 19 20923 - 21885 782 320 aa, chain + ## HITS:1 COG:ML0707 KEGG:ns NR:ns ## COG: ML0707 COG0005 # Protein_GI_number: 15827299 # Func_class: F Nucleotide transport and metabolism # Function: Purine nucleoside phosphorylase # Organism: Mycobacterium leprae # 63 320 12 268 268 239 55.0 7e-63 MMVRDGMKVLFSSVTGSIVSAADGKVLARGHGTPPRLHDVTDQTSIPSPDSPLTGDHPGF AEARAAADTIARATGVAEHRVAVVLGSGWGEAAGLIGDEVAAVPLAEVPGFHAPKVPGHN AVIRSVRLPDGTHALVFGSRTHFYESRDAQAVAHTVRTAAAAGARTVVLTNGCGGLDPEI APGTPVLIADHINLTGATPLAGATFVDLTDLYSPRLRAIAREVDPSLREGVYVQFAGPQY ETPAEVRMARTLGGDLVGMSTALDAIAARHAGLEVFGISLVTNLGAGISETPLSHAEVVE AGQAAGPRIARLLADIVGRL >gi|289558341|gb|ADCD01000021.1| GENE 20 21885 - 23615 1396 576 aa, chain + ## HITS:1 COG:PM1074 KEGG:ns NR:ns ## COG: PM1074 COG1109 # Protein_GI_number: 15602939 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Pasteurella multocida # 17 563 3 530 551 402 46.0 1e-112 MPAHPPHDDVAALPEDVLARAERWAAEDPDPAHRDTLRAELDAAAGVGPEAAAARAALAA RFAGPLVFGTAGLRAEEGPGESRMNRLVVRRTAAGLAAHLWDGVGRDAAPPLAVVGYDAR RGSAAFAADTAAVLTAAGVQTVLLPDPLPTPVLAFAVRHLSADAGVMVTASHNPPADNGY KVYLGGRLTDEAGRGAQIVSPADAQIAARIDHAAWTADIPLAEDGWTVAGPDLLEAYRAA ALGVLDDDRHGHRDLRVVYTPLHGVGGAVVPGLLEDAGFGPVHVVAEQAAPDPAFPTVAF PNPEEPGAMDLALALAAEVDADLVIANDPDADRLALAAPVTDAHGVRTWRMLSGDAVGTL LGAHAMPALHAAGRSAANSVVSSPQLAALAEANGVTHHVTLTGFKWISRAPDLGFGYEEA LGYCVDPDMVRDKDGITAALMAAELTAALTAQGRGLTDALADVDAVTGAMPSAQVSVRVA DLSLIARTMTALRQQAPATLAGEPVTVRRDLAAGGDGLPPTDALLFATDSGTRVLVRPSG TEPKLKCYLGTRDADPAAAAERLEALRAEVTALVGG >gi|289558341|gb|ADCD01000021.1| GENE 21 23636 - 24325 641 229 aa, chain + ## HITS:1 COG:lin2103 KEGG:ns NR:ns ## COG: lin2103 COG0274 # Protein_GI_number: 16801169 # Func_class: F Nucleotide transport and metabolism # Function: Deoxyribose-phosphate aldolase # Organism: Listeria innocua # 10 229 3 215 223 208 58.0 8e-54 MTVSLTTAELAKYIDATALKADTSEADVRRLVAESREAGVKSVCINPVWVPLVAAELAGS DVLTCTVIGFPLGANASEVKAFEARQAIDAGADEVDMVLDIAAARAGDRARLVADVRAVA EAAHAGGPAGEGGALLKVIVETALLDDDAIVLACEAAVEAGADFVKTSTGFSTAGATVEH VALMRRTVGEDIGVKASGGVRTRADALAMIEAGATRIGASSALAILGSD >gi|289558341|gb|ADCD01000021.1| GENE 22 24306 - 25322 373 338 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MAPHVRLDVAAEHLAAEDEQQAGQGQPDAQRRAGDRGVRHEVGPRQPGQAHRPGDGGREA LEEPAQHRGEEQDGDEPEGPPRGLLVRAPVPAGEHQAPQQVGVVGEPRERRHGHERRPHQ VRHHQAPEAAPHVLGPGAAARPEVAGEEEEQRHPPDLQVPAEGEVRQVRVTQHHRRDGDK PKGVHPRVAGGRPSARGGRTTGVSDPRLRDGSAVRGAGLDGVGAGGGVLDGGTGVDGGGV HGVAAAQEHLGDHEGHGGQGQRDQAGDPDRLERPEAHGVEAAEERAEGDDEGDQGTPDAA HVGVVDGLAVADHVMLLRCGPGRGGRPAEVMRVSRIPG >gi|289558341|gb|ADCD01000021.1| GENE 23 24864 - 25835 797 323 aa, chain + ## HITS:1 COG:no KEGG:Mlut_05570 NR:ns ## KEGG: Mlut_05570 # Name: not_defined # Def: acetyltransferase, fucose-4-O-acetylase # Organism: M.luteus # Pathway: not_defined # 1 323 33 355 355 533 95.0 1e-150 MPLFFFLTGYFWTRGRPWAKDVRGRFRSLMVPYLVWAALMSVAAFAWFADDPDLLRRLVL TGWYGGADQEPPWWAFWFISVLFFTTVLRRFLERFPSAVAWAVGLAGLAWAHLVPDSAIA RTPLGVGLALPCLLFVLSGEMFRRHVQPHVRRHRTLIGVGLVLLGLVAVRLGLEPPNIKF GGFGTPVLTPAVGVLMSAGMVLVFGSMVERLLRSFARRTGTGQALRRVITALVRTGTVVV LLHGWVLMWIMRHGVEDNFAKFALALALSWVAGLALLATPLSKPFTGARRRWYPVHRLRR VEPPHPVTSALPRVTTASERTHP >gi|289558341|gb|ADCD01000021.1| GENE 24 25832 - 26773 629 313 aa, chain + ## HITS:1 COG:no KEGG:Mlut_05530 NR:ns ## KEGG: Mlut_05530 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 172 300 10 137 141 66 38.0 1e-09 MSRDHRPPIRNPFLPPTPEEPEVPAHDGGHPAGDGGDADAPAASTGREDRLAEFRLGPAF RPHPADPAAPRQRATPAERAVAPATAATAEPASPASPADRAPGPLPSARVLVVCTGNICR SAYVEYALQAQLNALLGDRGRAEVTSAGTEPNQALTVPGPLLDLAPSRRVRAALTQHRPQ QLTGRSLADQDLVLTATDDHLDEVLREDPAAVRRTFTILGMGTLLRDHGEELAASVPPGA GVTVLVTALAELRSRLIAHGERPDADLPDPFRGPAEGYAAMAQTAQPIIELLAWEIARAL DGDLVEDEDPTGA >gi|289558341|gb|ADCD01000021.1| GENE 25 27171 - 28289 622 372 aa, chain + ## HITS:1 COG:no KEGG:RMDY18_15750 NR:ns ## KEGG: RMDY18_15750 # Name: not_defined # Def: dioxygenase related to 2-nitropropane dioxygenase # Organism: R.mucilaginosa # Pathway: not_defined # 90 357 75 344 349 154 36.0 5e-36 MLGEHGEWNSTGGSRQVAQLIASPATRSWMARRHGAPGSVRVSRRQSTNPPESPFTLHRV SGTVTTGPSFRWTKLAAMGERATGQRPAAPPSLDLEVRVRLAHARITHLLDRAGIRGLHV KGYATEPGVYPDHRRSSDVDLLVHPADAAAVTALLRSHGWEPVATFSEGSIFQHAATLWH DQLGYVDVHRLFPGLGASPETAFDALWSEHIHLVIAGRPVPVPSPRHQRLVVIVHAARDP FRGGLDVRHIRESLPAESWAALREEAHRLDAGAAWHVATGEAADGVDTRQLALFAALHES QSGLELFRTRWRSAATVRERAVLVARTIPVNRPHLQMRLGRPVTRADLWREQGARLGALA GWAWTKAVRRGR >gi|289558341|gb|ADCD01000021.1| GENE 26 28360 - 28611 235 83 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289704874|ref|ZP_06501291.1| ## NR: gi|289704874|ref|ZP_06501291.1| conserved hypothetical protein [Micrococcus luteus SK58] # 1 83 28 110 110 137 100.0 3e-31 MTLEAGQPLLLSASGDVIWEVLVGGRTPEDDLVADPPAPLSTTDVTVQVAEAFGLAPADV AADVHTFLEMLEAHGVLDRVRTA >gi|289558341|gb|ADCD01000021.1| GENE 27 28618 - 32274 3250 1218 aa, chain - ## HITS:1 COG:MT1048 KEGG:ns NR:ns ## COG: MT1048 COG1197 # Protein_GI_number: 15840448 # Func_class: L Replication, recombination and repair; K Transcription # Function: Transcription-repair coupling factor (superfamily II helicase) # Organism: Mycobacterium tuberculosis CDC1551 # 48 1213 34 1202 1234 1090 54.0 0 MSAPETTPVLAPLLPRLRAERAIEAAAASASRPLEARGVELEIGLPDGARAPLLTVLAEA LAEGHGERAAVLVVTATTREAEDLVTDLAAWAPAGAAALFPSWETLPHERLSPRSDTVGA RLAVLRRLAHPEEHAEGPLRVVVAPVRAVLQPLVAGLGELSPVTLRTGEERDFDGVVAAL ADAAYSRVDMVSRRGEFAVRGGLIDVFPPTEDYPVRIEFFGDEVEQMRWFSVADQRSLED TTEDGSGHPSELYAPPCRELLITDHVRRRAKELIPAMPAAADMLDRIAEGVAVEGMESLA PLLAEAMTSLPRMLPAGSLTVLVEPERLRGRADDLLATNEEFLQAAWAGAAQGAVAPVDV AGADQSAAGGFLTVAELRAAALEQDQGFWSVTALVSDDELLPDAATLRATLGVAQTFSGD IEAMVAHTRVRLAEGWHAVVLTDGPGSARRLAELTTEAGLTASVADGPLPADLAPGRVSI ATAPVGSGFTIPDAQIALITEHDLFGRHRTAGTRAPGARLARKRRNAVDPLTLQPGDHVV HSQHGIARFVELQRRKVTGGPRTAPGAEESYREYLVLEYAPSKRGAPGDRLFVPTDQLDL ISTYVGGETPSLSKMGGSDWAQTKSKAKRATREIAGELIRLYSARMASRGHAFAPDTPWQ AELEEAFPFIETPDQLTTIEDVKKDMEAAVPMDRLVSGDVGFGKTEVAVRAAFKAVQDGK QVAVLVPTTLLARQHHQTFSDRFAGFPVKVAALSRFQTAKESKEVIEGLAHGEVDVVIGT HRLLSDQVQFKDLGLVIVDEEQRFGVEHKEALKKMRTNVDVLAMSATPIPRTLEMSLTGI RETSTLATAPEERHPVLTSVGPYSDQQVTAAIRRELMREGQVFYVHNRVTTIDKVAKRIA ELVPEARIAVAHGKMSEARLEQIMVDFWERKFDVLVSTTIIETGLDIANANTLIVEDAHR YGLSQLHQLRGRVGRGRERAYAYFLYDPQKPLGEVALERLKAVATHNELGAGMQLAMKDL EIRGAGNLLGGEQSGHIAGVGFDLYLRMVGEAVADFKGEEDTAPAEVKVELPVNAHLPHD YVPGERLRLEMYRNLAQAADDAAVDAVVEELKDRYGPLPEPVEALVAVARFRNRARAAGV TEVMLLGQNVKFGPAADLPESRQMRLTRMYKGAQVKPALNGVLVPRPKTKPVMGQDLVDV PLLEWAQQVVDAIFAPEG >gi|289558341|gb|ADCD01000021.1| GENE 28 32271 - 33335 813 354 aa, chain - ## HITS:1 COG:no KEGG:Mlut_05550 NR:ns ## KEGG: Mlut_05550 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 354 1 354 354 461 96.0 1e-128 MSALWAVALILLLSGTAKLRSGEDVQATFTRLRVPRPFAAPALARAFPWLELLLAAALLQ PFTLLRPVVGLVAVALFAAFLALVVRAQDDGVSCGCFGEASAAPISRTTVVRNVVFLVLA VLALAEGIVSLAVHGAGLAWQPLAAFGAGAWAWALLVSVLLATAAFLAGRESVPAAPDVA AATPTPEAPAAVDPADGAEPERHPFPDAVVVADGEYTGLHRLVADGAVVALRLSTGCGSC ARVIERLDEFKDALGPVRLRVIMPQHAPGAEGAIHSGAVDASLVLADPAGAASQALGLHS FPTAVLLGTDRLTAGGPVGGADDVLAFLEEIREIMTTELPAATDGSTATPEVRA >gi|289558341|gb|ADCD01000021.1| GENE 29 33667 - 34047 370 126 aa, chain + ## HITS:1 COG:no KEGG:Mlut_05540 NR:ns ## KEGG: Mlut_05540 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 125 50 174 175 201 97.0 9e-51 MTVTAVRSLPADRIPDRVPDMARKLIGSALQVEQVERWDAPAADGSRAGTTTITVPSAKA TADGSLRLTAAGEGSQFSVDGTLVCRIPLVGSKLAAKAEPMVGKVVNRQARALSSWLERD GGAARG >gi|289558341|gb|ADCD01000021.1| GENE 30 34137 - 34706 385 189 aa, chain + ## HITS:1 COG:Cgl0344 KEGG:ns NR:ns ## COG: Cgl0344 COG0394 # Protein_GI_number: 19551594 # Func_class: T Signal transduction mechanisms # Function: Protein-tyrosine-phosphatase # Organism: Corynebacterium glutamicum # 2 185 10 198 201 70 32.0 2e-12 MVCTGNVCRSAYASRALQGRLAALVPGRVEVGSAGTQPNQALRVPPPLVRLGAEAGVTGL EGHRPAALQPFMVAEADLVLAAAQEHMRFALHEVPQAVTRMFTVLELAALVRAMDQRDGR DWIPAGRGVRAFAAEAARHRALARSTAQPLDVVDPFRGPVEGYAEMIQIMDPALETIADA LARAVSPTP >gi|289558341|gb|ADCD01000021.1| GENE 31 34752 - 35246 481 164 aa, chain - ## HITS:1 COG:MT1042 KEGG:ns NR:ns ## COG: MT1042 COG0193 # Protein_GI_number: 15840442 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Peptidyl-tRNA hydrolase # Organism: Mycobacterium tuberculosis CDC1551 # 1 164 27 189 191 146 55.0 2e-35 MVADELASRMGVGFTRHRAGAVVATGRLGIGGPRVVLAKSTGYMNVSGRPVSALASFYGI GPEDLVVVHDELDIPFDTLRLKRGGGEGGHNGLKSITASLGTKDYARVRVGIGRPPGRMD VADFVLRPFTKPEQDVLPLHVDRAADAVEKLVTDGLEPAQQAFH >gi|289558341|gb|ADCD01000021.1| GENE 32 35335 - 35973 1012 212 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|239917085|ref|YP_002956643.1| ribosomal protein L25, Ctc-form [Micrococcus luteus NCTC 2665] # 1 212 1 207 207 394 97 1e-109 MSDQLKIKVTRRTDFGKGAARQARRAGLIPAVVYGHGQEPVHLLLPAQETTLAVRNPNAL LTVVNEAGEEHLVLPKDIQRHAIKDTVDHLDLIEVRRGEKVVVEVTVQVEGEVAPGTEYV LDYVTVPVEADATDLPEAVTISVEGREAGDHVYAPDVQVPAGATLQLEDDIVIATVSEVV EQDLGDESVQEEQAAESAEGEPAEGESEGSED >gi|289558341|gb|ADCD01000021.1| GENE 33 36159 - 38867 1348 902 aa, chain - ## HITS:1 COG:no KEGG:RMDY18_15800 NR:ns ## KEGG: RMDY18_15800 # Name: not_defined # Def: ABC-type Mn2+/Zn2+ transport system, permease component # Organism: R.mucilaginosa # Pathway: not_defined # 598 886 126 408 467 199 39.0 5e-49 MRVHCGEILHSRLQVVLAGPPLTHHEHSPVHGRGQERAVRDGQQGRGVDDDEEVLRCQLQ QGPHALRAQQLRRVRGRPAGGEQREVRDSGGREGVVRLHLTGQHLGQAHVARHLEEVVLP GAPQVGVHHEHPFAGQGQGAGQVRGDGRLAFGGVRARERDDARRLVDGDELEVGAQRPDG LAGPGVEVHGRLARASQGRVLWDGADHAGAGDLLHVGAAAHLHVEQAAEHGDGESRTQSG HDAQEDVATGVRAHGGRGHAGVRQGHDLQGAVLVHLRRHVRRRLQGAVREPRGGLGIRRG GGHLDHAGPGDERRRERVVVVLPRVLCHAFTHGLAVDQGDVGLSPALGGSVAGDEALIRV PRGEEPLRFGRVDPGLQRGVAPAQQTPHEGGRQEQEEVGAQQAEEVDDRHGAPRGSWTGT RGPSWARHARSTVPRPTARPEGPEDGARHRATLNRVSPGVHERFRTMRSSTPRDRTAARA VRAVAPPEDRPARGHASLGLVPDGQAAWTRSPWNPLVTSASPRLFEAVLAVGLVVEAFTA PGLPIPFAEFSAILLLLLASFRQPRRDLSHYGMLALVALALVAYLVAVTVRNDLDPTRRA TRITLLILLIYAIASERIDIKGILYGMTAGALINVPLFYAGLAPDTYGGYLTGFLGDKNV SGLFYALLPVLLVATMQRMGPKFLVLGAGSVLTFLTGSRTSMAALFCAVAWILVSPYLGR ALRIALAVVMGWFVSWAEENLADLGIFGDRTGTDWFRAQIQAASVEKVAETSFFGQGLST AFVDLDHVSMFFHNSYLGLLVEGGWPFLIVVVGAYLWLCLRPFARTHRSPSRVAVEAAAL IILVASLQLGEVFITIFGAIVLGCGLLLSAQEDEEDHGAPAKDRAHRRKLDRIIERSRRA GR >gi|289558341|gb|ADCD01000021.1| GENE 34 38676 - 39041 179 121 aa, chain + ## HITS:1 COG:BH3668 KEGG:ns NR:ns ## COG: BH3668 COG0489 # Protein_GI_number: 15616230 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Bacillus halodurans # 1 87 146 231 235 60 40.0 7e-10 MRALLKLASEDFFVIVDSPPLLPVTDGSLLATAVDGTVLVVRQGRTRKDHLEAAVENLAA VDAHLLGVVMNGVARSQRGGGYAYGYGYESTYHKSHEKYLSSVGSSAKKGRRSRRKARTR S >gi|289558341|gb|ADCD01000021.1| GENE 35 39103 - 40518 1132 471 aa, chain - ## HITS:1 COG:Cgl0332_2 KEGG:ns NR:ns ## COG: Cgl0332_2 COG1091 # Protein_GI_number: 19551582 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-4-dehydrorhamnose reductase # Organism: Corynebacterium glutamicum # 189 470 1 267 271 216 48.0 5e-56 MRITETAIPGLLVLDLDVHGDNRGWFKENWQREKIRALAVEHPRLASLAPVQNNISFNDA VGTTRGIHAEPWDKYVAVAHGRIFGAWVDLREGPSFGAVATVELGPEKAVFVPRGVGNSY QTLEPDTAYTYLVNDHWSADAQGQYTFLNLADPTAAIAWPIPLEDAELSDKDRAHPMLAD VTPMPPAPILVLGAGGQLGRALVVRAEAAGIPVEAHGRDTWDMTDPASWPREHFRGLRAV VNASAMTAVDAAETPEGRAQAWAVNATAVAELARRCTEAGVPLAHVSTDYVFDGALPVGR EHPVDHPLAPLGVYGQSKAAGEAAVRTVPRHWIVRTSWVIGEGKNFVATMASLAERGIDP AVVADQHGRLTFADDLADALLHLVTTDAPTGTFHMTNSGDVVTWHDVARWVFEDTGHDAG RVSATTTAGYLAGKEGVAPRPTNSALDLGPLAAVGYTAPDQRERLRTYLRR >gi|289558341|gb|ADCD01000021.1| GENE 36 40532 - 42337 1241 601 aa, chain - ## HITS:1 COG:Cgl0333 KEGG:ns NR:ns ## COG: Cgl0333 COG1088 # Protein_GI_number: 19551583 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-D-glucose 4,6-dehydratase # Organism: Corynebacterium glutamicum # 273 601 4 339 339 492 67.0 1e-138 MRAQHVREVSQASLHLGQPCCRQLGVGAEREGHLVQHLAGVRGEVRRQASPQRRTPVTRD LSRSHRPDGGIGVQHIQVRAGPSAVGLDVQVDTTVVVHQVGAEVVRPVHGGEVLVRRGQG VSVNDVVREVLRSHQLDGQVRVLLPDDVHGATAIGSERVVPCPQEVETSWGRLLLGMRKQ GGEPEVVDGKGAGCRLQDGSLGPAGHRVTGPVVGVTACLRILGSGPSCCGPGCPAGVLPC DVSAVFGPAGHGEDVHLPILGRSGTHKLDPMHLLVTGGAGFIGSNFVHHVVRETGHDVVV LDKLTYAGNRENLAGLPEDRVTLEVGDICDTALVDRLVAESDAVVHYAAESHNDNSLNDP SPFIQTNIVGTFVLLEAVRKHGKRFHHVSTDEVYGDLELDDPAKFTETTPYNPSSPYSAS KAGSDHLVRAWVRSFGVQATLSNCSNNYGPYQHIEKFIPRQITNLIDGVRPRLYGQGVNV RDWIHTEDHSSAVLRILERGEIGRTYLIGSDGERNNREIVEILLELFDRPADDYDLVADR PGHDLRYAIDNTALRTELGWEPQFTDIRAGLADTVRWYRENEAWWRPAKAAVEATYRAQG Q >gi|289558341|gb|ADCD01000021.1| GENE 37 42239 - 42496 199 85 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289704885|ref|ZP_06501302.1| ## NR: gi|289704885|ref|ZP_06501302.1| hypothetical protein HMPREF0569_0652 [Micrococcus luteus SK58] # 1 85 117 201 201 162 100.0 5e-39 MSFAFRPHTELAAAWLSEVERRLRYFADVLSAHPAVDAMGAYGEYPVPWFALHSASLSPL ALKHHERVRIMDSLELSLGGFETYR >gi|289558341|gb|ADCD01000021.1| GENE 38 42981 - 43598 195 205 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289704886|ref|ZP_06501303.1| ## NR: gi|289704886|ref|ZP_06501303.1| hypothetical protein HMPREF0569_0653 [Micrococcus luteus SK58] # 77 205 1 129 129 251 100.0 1e-65 MSQRLLSLSRLPQASAELRKVSCIEVSQYRFSRGIGHLGDILPLGSLPWAYAVVERCGRQ GRSLPARGEQEAEPELMILKASMQALVEPTDKFSIFAPTGRADGNLVLKGDVWAPKTRGG PVRPVCSSESCNGRHGHSNPRLMEGRHRLCGMHRVYPIVAVQEHDDMASGGGETSISRSR RARILLADHPQSIITADEGAGDGGS >gi|289558341|gb|ADCD01000021.1| GENE 39 43773 - 44777 279 334 aa, chain + ## HITS:1 COG:no KEGG:RMDY18_03700 NR:ns ## KEGG: RMDY18_03700 # Name: not_defined # Def: GTPase-activating protein # Organism: R.mucilaginosa # Pathway: not_defined # 2 322 13 337 349 219 42.0 1e-55 MSVDILYIRPGGSGWGPIAQLAMLTAKVLGGRLAEVEDTGRASMAQRVSSLLPRGPRRRG RRLLVIAGNPAALALAARPNMWWPGYDSTAAWVIDSFWTDRIARIARHRPHLDHLFITDP NLAEEWRSATGRPVDVLPWGADTLAFPAVAAPRPVDLLRLGRQPAAWEDDNVTAAEAADH GVVFEGRPPTAPTPEANQAAVRDALARARLVLAFSNRVSPAPYTHPTREYLTGRWMDSLA AGCLVAGTAPSTATDLLWPGATLEISPNDRAAAWPTIAAAAAAWTPEQAAIQQVRARATV DWRWRLVNLCRILGWDDAERRAARATRSLDLSRY >gi|289558341|gb|ADCD01000021.1| GENE 40 44805 - 45737 316 310 aa, chain - ## HITS:1 COG:PAB0796 KEGG:ns NR:ns ## COG: PAB0796 COG0463 # Protein_GI_number: 14521394 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Pyrococcus abyssi # 12 251 3 235 331 66 29.0 8e-11 MNESAVAGTPIVSVIVPAKDAAKWIPEQLRALASQVHAPSFEVVIGDNGSTDGTREAALQ EPVPFTVRVVHASGPASASHGRNVAARAARGRILLFCDADDLVGPAWARSLTDAVAEDSF RIATGALHHGRFNSPEVLAAYRIGPDPEVDELARPTAVKENPGGFAGHLPTVAGGNFAIH RSAYLALGGMDVAYPGGAEETDFAWRAQRAGMKVVSVPQAVVHYRLKSEPRSLFRQQRIQ QRGRIYLWTRYRDSPMRGPSLKASAREVLRGVAALPASRRDEAAQLAWSAHVGAHVGALE GMMRYRLFRR >gi|289558341|gb|ADCD01000021.1| GENE 41 45734 - 46246 249 170 aa, chain - ## HITS:1 COG:SPy1065 KEGG:ns NR:ns ## COG: SPy1065 COG0110 # Protein_GI_number: 15675057 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Streptococcus pyogenes M1 GAS # 55 167 75 188 188 96 39.0 2e-20 MKIPGGATARRLLLVASRSEVLPNRVRPALLARLGLQGARDSWFSAEVRVLDPSSLSMRE GCFLNREVFIDNGPVALGRNVYMGPRSMIITAKHSIGGPEMRAGKGGPEPVVIGDGTWIG AGAIILPGVNVGAGCIIAAGAVVTKDCEPNGLYAGVPARRVRDVDGEGGT >gi|289558341|gb|ADCD01000021.1| GENE 42 46243 - 46935 317 230 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|289704889|ref|ZP_06501306.1| ## NR: gi|289704889|ref|ZP_06501306.1| glycosyltransferase, group 2 family protein [Micrococcus luteus SK58] # 1 230 95 324 324 432 100.0 1e-120 MFADADDVVSRWWVRNGARAFSVTPLWSGGAQLMSNTDMTGGLEDIRAAMGDTADWTDVV PGNLRDAFPVLMGGDFGATREVYTRVGGFDISLGGVYEDNDFGVRAHRLGIPVDEAPAVR IAFRGKWDLRFRTRLARRSAYAHALVADRYGLNARSHFPSPWGEMARAAGSAVLMGAGRK PRDWPGVWMRLNTAAGHAWGKAEVYVPWKRRPASALGVGMAITRQGEERA >gi|289558341|gb|ADCD01000021.1| GENE 43 47292 - 48161 742 289 aa, chain + ## HITS:1 COG:MT0348 KEGG:ns NR:ns ## COG: MT0348 COG1209 # Protein_GI_number: 15839720 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-glucose pyrophosphorylase # Organism: Mycobacterium tuberculosis CDC1551 # 1 285 1 285 288 412 69.0 1e-115 MKGIILAGGTGSRLHPITHGISKQLVPVYDKPMIYYPLSTLILAGISDILVITTPHDAQQ FQRLLGDGSQFGISLSYVQQPSPDGLAQAFILGEEHIGDEHVALVLGDNIFYGPGMGQQL RRHTQVDGATVFGYWVADPSAYGVVEFDDAGKAVSLEEKPKEPKSNYAVPGLYFYDNDVV EIAKSLKPSARGELEITDVNRTYLERGSLNVEVLPRGTAWLDTGTFHDLNDASNFIRTIE SRQGLKVGSPEEVAWRQGLLTDDELRERAEPLVKSGYGRYLLDLLASHH >gi|289558341|gb|ADCD01000021.1| GENE 44 48166 - 49287 736 373 aa, chain - ## HITS:1 COG:CAC3071 KEGG:ns NR:ns ## COG: CAC3071 COG0438 # Protein_GI_number: 15896322 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Clostridium acetobutylicum # 9 373 3 362 372 194 32.0 3e-49 MSEQTPATIAIAHDYLTQKGGAERVVLALHRMWPDAPIYTTFYDPEGTFPEFKDAHIVTS PLNRVGLLRKDPRRALPLLPLASSLMHVKESVAVVSTSGWAHGFRYDGATLVYCHTPARW VYLLDDYLGEDGRDSIKGRVARVLRPGLRRWDRAAVRRRSRYVANSTVVKERIEDVYGLD GVDLVFPPHSVSTDGPQEPIPGAERPAEDGFLLSVARLMPYKHVDVAIAAAARAGRPLVV IGKGPEEARLRAMAGEDVVFGQDLTDAQLRWAYVHAIALIAASHEDFGITPLEASAWGVP TVALRAGGYLDTIVDGVNGVFVDAPTVDAVAGGVERLLAHDWDRAAMQAHAERFSEGAFA RQIRALVAELTDD >gi|289558341|gb|ADCD01000021.1| GENE 45 49297 - 50292 653 331 aa, chain - ## HITS:1 COG:no KEGG:RMDY18_15780 NR:ns ## KEGG: RMDY18_15780 # Name: not_defined # Def: cell wall biogenesis glycosyltransferase # Organism: R.mucilaginosa # Pathway: not_defined # 20 329 8 313 315 231 45.0 3e-59 MTCPYDPRGGLMTETPLTPEASVIVPSRGGAQRLPRLIGALAAQEDAPPFEVHVVVDGDV DGSEAVLGQLAAERPGLDLSWTVFPENRGRVGALNAGADATSGRILIRADDDLEPGPHYI RNHVAAHAGGPGGAIGLYVNVLEPTPYQRAYGDAQDVLHREHAYALPADRQWRHWAGNVS VPRALHEQIGGYDLDYRQYGWEDIDYGYRLHAAGYPVVIRPELETRHHAAAVTTHSKAVR ALHGTAARNLFVSKHGAAPLGTIGAPRGVWGAAVRLVALGTTEATLTRSSALIDAVTDHL PRGLARRLIALQVEGAAEAGRARPHRAQRAI >gi|289558341|gb|ADCD01000021.1| GENE 46 50276 - 51313 671 345 aa, chain - ## HITS:1 COG:AGl2563 KEGG:ns NR:ns ## COG: AGl2563 COG0438 # Protein_GI_number: 15891390 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 150 307 211 361 411 82 34.0 2e-15 MTGRIWILANQGEVGGGEVMLHHLATALRELGRDVGVVAPAHPAETADRLAADGFDVVRV GGPGRLGYLRALRAWDRGRDGDDVVWCNGLLPATALAGRPRRIVHLHQVPAKPVLRVFSA LARPGALAVLVPSRFAADRIHGARVLHNWVPGPRTPQAERTRDADGPVTVGFLGRLSEDK GILTLLEAAALLRKTDPGAFVFRVAGESRFVADDEAERLATALTAAGEDVQVLGWQDTGE FLASVDVLAVPSQWAESFGLVAAEAMAAGVPVVASDAGAVPEVVGSDHPFVVPQRDAAAL ANCLRAVRAVDLGEVAHSQRHRWASLFSPEAGRAAVAELLDDLSL >gi|289558341|gb|ADCD01000021.1| GENE 47 51310 - 52455 682 381 aa, chain - ## HITS:1 COG:mll0134 KEGG:ns NR:ns ## COG: mll0134 COG1835 # Protein_GI_number: 13470430 # Func_class: I Lipid transport and metabolism # Function: Predicted acyltransferases # Organism: Mesorhizobium loti # 25 379 11 366 370 112 30.0 1e-24 MTAASPNEPGSASVAPAEKRVPGPRFRELDGLRGLAALAVVFSHYTGAHNSHYPQDPAAF HDAAWGAAGVQLFFIISGFVIFMSARGARRPSDFAISRAARLYPPYWISLVFAVVLLLLH PVPGFPFTWGQALVNLTMVQRWVGVDNVVDVYWTLAVEMQFYVIILILLYLTRCRLSDRV VLWGSIAWSVISWGVVLFTAPHVGWDPQRDPLWVKLLNNATVAEYAPLFVLGMALYIARQ TGRHRGWVAAAAVSAVGSTFVMRGMPLALEVLVVVLLAVTVMLRERTSVLLLAPVQWYGK ISYSLYILHAIPGYILIHALWPYVGRNMAMLVALAVVSVLAWALQKYGEEHLGRVAKRGL TRVRSVVDARTGHPRSLEPAR >gi|289558341|gb|ADCD01000021.1| GENE 48 52452 - 53573 696 373 aa, chain - ## HITS:1 COG:TM0622 KEGG:ns NR:ns ## COG: TM0622 COG0438 # Protein_GI_number: 15643387 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Thermotoga maritima # 11 338 5 332 388 75 24.0 1e-13 MTAPAPASLTLWVVPVADLGGVARHVLDVARVGLPGLRLAVLCPEGPLAERLREQGAAVF TGDIGPDAGLAASVRTLRTAVRTLRPAAVHTHLAYADLAAFTALGPERAGRRAGAPALLS TEHGIAPDDQLYNRAAAARVKNAAHRARLRGTDLVIAVAQSTADVLRRKWGAGAPLTVVR NGVDVPAVRAAAAGQRRAPGEGLRILSLSRLAPEKNLDRLIAALPALLERDPGTRLTLAG SGPLEGQLRAQAEDLGVTDAVDVPGFVEPWGTMAEHDVLVQLSAWENLSYTLLDAAAAGL PAVATDVGGNGEILPPERLVHEATPAAVADAVTRAAAQGPGEVRVGDVETMARATAEATL EVLGRRVGKVGTR >gi|289558341|gb|ADCD01000021.1| GENE 49 53582 - 55753 1911 723 aa, chain - ## HITS:1 COG:MJ1065 KEGG:ns NR:ns ## COG: MJ1065 COG2089 # Protein_GI_number: 15669254 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sialic acid synthase # Organism: Methanococcus jannaschii # 96 435 6 334 337 220 36.0 1e-56 MTDNRERTVFVVDSHGFLVGSLTDGDVRRWRVAHPEAPLDVAAADVAHRDPATAPLGASP AEMREALPTGARHLPLLDERGRLTALAIDREAELCIGGHRIGEGHPAFLIAEIGNNHQGD VDLARRLVDLAVEAGADAVKFQLRDMDALYRQSGAATAGEDLGAQRTLDELAKFSLSAED MVRVFDHVRDAGVALMCTPWDAPSMRVLRAYPVDGVKIASADLTNHGLLRDAAASGLPMV LSTGMSREEEIRESVALVRSFGVPFAMLHAQSTYPAPYKDVNLAYLDRLAEIAQTPVGYS GHERGFHVALAAVARGAAIIEKHFTVDRGLEGNDHKVSLLPEEFAQMVRQTRDIEESIGV GTERVVSTGEAMNRINLAKSLVAARPLQAGATITADDVTVKSPGRGLQPNELPRLVGRTL HREMAEGDFFFAGDLTDTVPTGRQFQFRRPWGLPVRYHDVAALTKDCTPDFLEFHFSYKD LEMDIDSVFTEPLPMGFTTHLPDIFSGDFLVDLASDDDAVWERSIAEVQRTIDITRDLKR WFPSEEAPIMVITMGGFTLDRHIRPEERQPKYERIAEAVKRLDTSGIRIAAQTLPPFPWL MGGQQYHNLFMDPDDTVAFVEATGVPLCLDISHSKLSATFLGIPFSEMVEKLAPHTIHLH LVDATGVDGEGPQIGEGDVDWPVLCEQLDRLAPGVSFIPEIWQGHINNGEGFWTALDRLE QWL >gi|289558341|gb|ADCD01000021.1| GENE 50 55822 - 56613 523 263 aa, chain - ## HITS:1 COG:MA3766_1 KEGG:ns NR:ns ## COG: MA3766_1 COG1083 # Protein_GI_number: 20092564 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: CMP-N-acetylneuraminic acid synthetase # Organism: Methanosarcina acetivorans str.C2A # 4 224 5 218 227 110 32.0 4e-24 MSILCVIPVRGGSRGLPGKNIRLLGGHPLVAWTIQAALEAEEDLHVVVSTDSAEIAEVAL RYGADVPGLRPAHLAQDSTPTEPVIEHVLAAERAAGVEPEGVMLLQATSPLRLPGTLDRA VRQFRDTGVDSLVGVVPVSPFLWRHAEDLDGEPIPDFDVTARKRRQDMTGTDLRFRENGS LYVTRPWVYDRLHNRLGGRIGLLELDDLEGVDIDTELDFALAEQQMDQYLAVHKVLQHRS GLGAPHTAESPTTGPNRTPGGAQ >gi|289558341|gb|ADCD01000021.1| GENE 51 56610 - 57731 666 373 aa, chain - ## HITS:1 COG:no KEGG:RMDY18_15850 NR:ns ## KEGG: RMDY18_15850 # Name: not_defined # Def: predicted RNA-binding protein # Organism: R.mucilaginosa # Pathway: not_defined # 12 366 7 356 364 209 40.0 1e-52 MTDAPLFWRSEDLPRWHAWQRAQWPLTRRAADTARSTVRAVAGALTRRRPTGDDAPRLLL PAGDVHTLVALESFGPTQLAALASPVAALATARPEVAAGVGWVLPAGDAPALPGAAGHRE HAATADVVTERLSGLRRVLVAGEYLPSGRAAVRWARQRGARIGVVQHGLLAVSTPPVPQD ATLYAFTSADAHWWTQGRADVEAVPVGSALLEQARRAAPALSGAGDDGPGVFLGQLHGAE LPRRDFAAAAEQYVRATGAAYRPHPAERDRLSRGQHVAWRRAGVRIDDAGAPLIATRGPV AAVFSTGILEAAQAGRPAWAVHPDPPAWLEGFWRRYGMSRWRPGRTPEPTPPLASPTADP AAAIAEHVWKETA >gi|289558341|gb|ADCD01000021.1| GENE 52 57728 - 58789 869 353 aa, chain - ## HITS:1 COG:no KEGG:RMDY18_15870 NR:ns ## KEGG: RMDY18_15870 # Name: not_defined # Def: hypothetical protein # Organism: R.mucilaginosa # Pathway: not_defined # 22 353 5 332 332 283 46.0 8e-75 MSATGYTVPAPPDARGGRSPERLFLVSPAFHGYHRSIAAAWAAQGFDVTVHCYDAYATLG MKLRNKGLLELPQKAGVDRTAARVAWDTGRAVAALREARPDRVLVIKGDSLGEDFWSEIL EAGLPRMLWLYDDLARHDYSMEFLRSVGPVLSYARSEAELLAGEGVDAHYMPNGFDPAMA LPQVPRRDELVFVGSRYPNRVELLTRLAAAGVPVRAYGRQWSHHPVDRLRTWELTRPDLP AERDIPLEEAYAVQAAAAGAINIHGLQAGHAMRTFEVPGMGGLQLVDRADVAEFYVPEEE VLVFEDADHLIELGRRIVADPAWGARIREAGRRRSHAEHTFAHRAAMAQGWWA >gi|289558341|gb|ADCD01000021.1| GENE 53 58786 - 59709 794 307 aa, chain - ## HITS:1 COG:ML0752 KEGG:ns NR:ns ## COG: ML0752 COG1216 # Protein_GI_number: 15827319 # Func_class: R General function prediction only # Function: Predicted glycosyltransferases # Organism: Mycobacterium leprae # 20 231 14 235 308 67 28.0 3e-11 MAAQPTTAAVTVVIPHYGDPAPTLALVDRLLADPGDALAAIVVSDDASPTPYPEAHDPRL TVVRRERNGGFGANVNTGLAAVTTELALVLNSDAEITGAQIDALVAAAAPYQPAVVSPQV VNEDGTPQWSGRHFPTVLHQTVEWLTPLARFRHLDVLHEAVGHDVAVARSVSPVAVDWVM GAVLLLPMAQVRAVGGFDEEYFMNSEEVDLQRRLRERGVPSIVVPAVRVPHGLHGSSDPL RRRGWLVDSRYRYARKFGHPRALKAALTAATGANFAVNMLRQARGVDVDARAVLRDEHAL VWKGQRR >gi|289558341|gb|ADCD01000021.1| GENE 54 59910 - 61004 629 364 aa, chain + ## HITS:1 COG:no KEGG:Mlut_05500 NR:ns ## KEGG: Mlut_05500 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 2 364 11 379 379 358 60.0 2e-97 MRETTALRIGAGLDAVTVSGLTGDERAEVVESWARCGVEAVEPPARADAHRDADTARPWL QWHEDLVFLATSRAIESARGTHLLFHAACLAAPDTGAAIVLVAASGTGKTTATRRLGPHF AYLTDETAIIAPDGLSVTPYPKPLSVLDARGVRPKTQRGPDDLGLGPTLAAARLARIAVL DRVRDPAGPVTPRAEPMELLAALGALVPQTSSLARLPRGLVTLCRVLDAVGGARRLVYAE AEDLRDVVDGLLAAPPTPVTPAWEALTDEELRASAGAAAPGAVSRCAVDDGILTDSGRLV LLVSERLVVLDGVGPTVWLLLDEPRTAADVVAHLRAEGPVPEDAEARVREAMDALIAVQL ATAG >gi|289558341|gb|ADCD01000021.1| GENE 55 61058 - 61810 532 250 aa, chain - ## HITS:1 COG:Cgl1987 KEGG:ns NR:ns ## COG: Cgl1987 COG0681 # Protein_GI_number: 19553237 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal peptidase I # Organism: Corynebacterium glutamicum # 17 249 23 254 262 112 32.0 9e-25 MAERVEPARGDDVDGEAGAVPQPRRPRLPFWASLLVNVVVAIAVVAVVQALWVKVYSVPS GSMENTLEVGDRMLVNRTAYPDGMADSQDVVVFTANEDWATPASSEGALENAVRTFGDLT GIGRSHEQALVKRVIGTAGQTVECCTAEGAVTVDGEPLDEPYIHNDLPFLRDELDCESEV MSARCFGPVTVPEDSMLVLGDHRSNSADSVIACRGIPADQAGDCARFVTREDIVGEVFVT VWPPTHWGGH >gi|289558341|gb|ADCD01000021.1| GENE 56 61813 - 62895 875 360 aa, chain - ## HITS:1 COG:MT1045 KEGG:ns NR:ns ## COG: MT1045 COG0462 # Protein_GI_number: 15840445 # Func_class: F Nucleotide transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoribosylpyrophosphate synthetase # Organism: Mycobacterium tuberculosis CDC1551 # 44 360 10 326 326 429 68.0 1e-120 MGARTGPPRAADADAGRPPLSVLERETTKDVEDVMTELSRSEDKRLVLATGRAHPELAQE IAEELGTELLPMSAYDFANGEIYVRSGESVRGKDVFIIQSHPAPLNNHLMEQLIMVDSMK RASARRITVVSPFYPYARQDKKGRGREPISARLVADLYKTAGASRVMSVDLHTAQIQGFF DGPVDHLFAIPLLADHIRSSVEGEEVTVVSPDTGRVRVAEQWADRLGGVPLGFVHKSRDL TVPNKAESKTVVGDVEGRVCVLIDDMIDTGGTIAGAVQILKDAGAKDVIIAATHAVFSDP AAQRLGECGAREVVVTNTLPIPEEKRFETLTVLSIAPLIARAIREVFEDGSVTSLFDGVA >gi|289558341|gb|ADCD01000021.1| GENE 57 62912 - 64405 1344 497 aa, chain - ## HITS:1 COG:ML0249 KEGG:ns NR:ns ## COG: ML0249 COG1207 # Protein_GI_number: 15827045 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) # Organism: Mycobacterium leprae # 9 479 7 468 492 437 53.0 1e-122 MSQPSARPSAVIVLAAGQGTRMKSTTPKIMHAIGGRSLVGHALAAAWSLAPEHLVAVVRH ERARVAEHIETVAAQLGIDALAIADQDDVPGTGRAVELGLAALPADLEGTVVVTYGDVPL LTPETLARLVADHEADGNAVTVLTATLEDATGYGRIVRDAEGLVERIMEHKDALAHAEST GDDSFVAIREVNSGIYAFDAALLRRTLPEISTDNVQGEKYLTDVLGMARAEGGRVASVGT DDVWEVEGANDRRQLSDLGRQLNDRVLRGWMKEGVTVVDPSSTWVDVTVSLASDVTLKPG TQLHGATSVATGAVVGPDSTLMDTQVGEGAVVKRTDATEAVIGAGATVGPFTYLRPGTVL GEDGKIGAFYETKNVTVGRGAKLSHLGYAGDAEIGEYTNIGCGNITANYDGVAKHRTVIG AHVRTGSNTVFTAPVSVGDGAYTGAGAVVRDDVPAGALALNAVAQRTIEGWVPAKRPGST SAQAAEAAGAAVANAEG >gi|289558341|gb|ADCD01000021.1| GENE 58 64579 - 66033 1161 484 aa, chain - ## HITS:1 COG:slr0820 KEGG:ns NR:ns ## COG: slr0820 COG2148 # Protein_GI_number: 16330725 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sugar transferases involved in lipopolysaccharide synthesis # Organism: Synechocystis # 240 484 232 478 478 204 43.0 2e-52 MGSTARGRVLGRPWERGLPLLVLIVDVVAVLLATFVSAQLRFGGPRRTTLPGAEVIDYSV ISLALSAAWVLALSIQGSRDIRILGVGSEEYKRVLQGTLYLFGTVAILAYAAGLEVARGY VGLALPLGVLLLLLGRFLVRGWVARQRHRGRFRRRLLLVGGPKAVRHIFQALDSEAGAGY VPVAAALPGYRTRQEDYLPIPVSTDLDTVEDVVALVEVRDVEAVVITSGHSFVPGDVRRL GWELQERGVSLIMAPALVDVAGPRLHTQPLAGLPLIHLSTPRLSEGKAFAKRAFDVVASG LGLIAISPLLIAVAIAVKATDGGPVLFRQERIGLGGRPFTMLKFRSMVVDAEEIRQRLVS DGGDADVLFKMKDDPRITRVGKLIRRTSIDELPQLVNVLRGDMSLVGPRPHLPHEVEAYE QYVHRRFLVQPGITGLWQVSGRSDLPWEEAVRLDLYYVENWSILGDLVILGRTVKAVIAA DGAY >gi|289558341|gb|ADCD01000021.1| GENE 59 66214 - 68055 1473 613 aa, chain - ## HITS:1 COG:MT1707 KEGG:ns NR:ns ## COG: MT1707 COG0488 # Protein_GI_number: 15841123 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Mycobacterium tuberculosis CDC1551 # 1 611 1 591 591 566 53.0 1e-161 MAHLLGAENIGIAFGTRTVLEGLSLGVDEGDRIGLVGRNGDGKSTLMRILAGLQEPDTGR VTRRGGVRVGVLDQQDRLDPEHTVRQVVVGDVDDHVWASDPKVRDVLGGLLDGFDLEQSV RGLSGGQRRRVALARLLAGDDDVLFLDEPTNHLDVEGVAWLARHLKQRWRPTDGGLVVVT HDRWFLDEVCTRTWEVHDATVDPFDGGYAAWVLARAERSRQAAVTEQKRQQLVKKELAWL RRGAPARTSKPKFRIEAANAIIEDVPAPRDSVSLAKMATARLGEDVLDLEHVSLTLGEKP ILDDVTLRLAPGERLGVVGVNGAGKSTLLRLLDGRIAPDSGRVKRGKTVVSATLTQDVKE LDDVAHLRVAEVMAREGSSFQVGDREMSSGQLLEMLGFGTSRQWTQVSELSGGERRRLQL LRLLVGEPNVLMLDEPTNDLDTDTLAAVEDVLDGWPGTLVVVSHDRYLLERVTDHQVALL GDGKVRGLPGGVDQYLALRAAMDDAGGPARGAGAARGRNDVVGTCAGMGGPEEDTGPTEA ERRLARKEMARLEKQMTRLRDRRSGLEARMAELGQAQDFDALTAASADLKDLDAQLDVLE EEWLQAAELAEGD >gi|289558341|gb|ADCD01000021.1| GENE 60 68121 - 69089 796 322 aa, chain - ## HITS:1 COG:ML0242 KEGG:ns NR:ns ## COG: ML0242 COG1947 # Protein_GI_number: 15827038 # Func_class: I Lipid transport and metabolism # Function: 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase # Organism: Mycobacterium leprae # 15 322 6 300 311 183 44.0 3e-46 MTTEDLGLDPTARHVTVSAPGKVNLSLRVGPPGADGYHPVATVYLAVSLRETVTAITRTD GRITVGPSGRHISLVDTQDVPWDERNLAHRAAAHLRRTLGLDPDTHGVHLEVAKQVPVAG GMGGGSADAAAALLACSALWETGHTRAELAELAAPLGADVPFSVLGGAAVGLGTGAELTP VAARTPVHLVLVPADAGLSTPVVFQTLDELRREGHLPDGPTRPEVNEAVLRALTAADPLE LATAMDNDLQTPAVVLFPELSDVLDLGLDEGALRGMVSGSGPTLLFVAQDEASALRLASA IEERTGVRALPVHGPVPGAHVL >gi|289558341|gb|ADCD01000021.1| GENE 61 69122 - 73141 1608 1339 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|46203980|ref|ZP_00209196.1| ## NR: gi|46203980|ref|ZP_00209196.1| hypothetical protein Magn03004581 [Magnetospirillum magnetotacticum MS-1] # 1 312 40 341 372 100 39.0 6e-19 MLGDPREGRDVQGLAAGAWVHAGGHQGVLRRLRRPRPGGERGAQGLAALGEGGVHHGEDL PAGRAARRRLAPGEGDQPGVDARSRPEHLGADGARLAHVRVPRRLGGRHAVDLGAGPGRK TVRDLLLHHHQAVPQPRQDRERVQQHGHGHVVGQVRHERGGTADGGGGPDLGQGLLAQRH GVRVQHGEGVLGPGAELGGGARQAGGGDRVDLDGGDGGGRVQQAEGERAQTGTDLQHVLV RGHVRGLHDAPDRVRVDHEVLAPLLGGTQVQLGGDAPHVRGAQQRGGGGVRGGLDHARES IGAPDGVTGAQGRGLRSGGEVTEPDELAELGARLLQPGERALADDPALVHQHDLIAALDR GETVGDHDDRDPSAQRLDHLGDPTFREVVEGRRRLVEHEEAGAPEERARDAQALALAAGD AHGPFADHGVQAVGELVQPLPQLGFAQHALHLGPVRRLGGLDVEEHVVQHRPVDHGDGLR DERHVVPPAARVGLELHPVHVDPAALGVVEADDQVHQGGLAGTAAAHEGVRGPEGDAQVD VAQDRLGLAGVGEGRVPHLDGLLERDALVGPVRRVQDRLCGGELRRRALEGRPGRADLIG GGHERRHGRQHAEAGHREQGERAERLPAAALDEGHGHERRDGGHEGDLEHVARHHREDHL EPRGFGALHAGRAVLLHEGRVVAADLHVLVVLQALQRRRVGPLPRGHQGPAQAGGRAADH GLDHPGDGEEVQGHPEPRQRHGDAHHDRHRDERHGLREERDGRVHHARVGHAGGAGDVVD QGADRARQVQAVVGPQVVAQQRGGRADEVLVGEPHGPPAEREHQDRLEQEGQHDHDGEGH RLLRHRHGPEPGQQPFERRRAQLPRGQQVDQREDRGERHHLEAGHEDGPEDHEHEADPHG AVHQVLRSLGQPGFEESGQHVAHPRGRVWIGLERAIHPGGVLTHRAGEGCHVVSARLRHA PQGQRDQVGRVGAAPMRMRREEGRVRLHEQQLGRGDPQRLAQLVVGLEGDGAGEGHVPAV LDARAGQIGAAGEAVEHHVRGQPAVGRLLEQDPDDVVVRVPVVDLQGRAEFAGESDVPAE GLLLRRVAGLVQRPEVVETRLADGAHAGVAGELRDLRERLLELAALGQAGRVVGVQRHGA EQAGLGLDRRDREPGRGDVAAQLDRTDHAHGLRRVHRLVHVHADQAVAEVEVRVVVHDGH RQRLRRGRVLETTLAARLLLAGVPARAAVVVRLLGGGAVGEGGLGCVGHAPHSREPSPGP RHASGAVSGDVRDKHHPTPPPEGTARRRGQACAAAHGSAMPMYCTEVYSSMPSAPPSRPR PDCFTPPNGAAGLEMTPTL >gi|289558341|gb|ADCD01000021.1| GENE 62 72988 - 74475 1436 495 aa, chain - ## HITS:1 COG:Cgl0050 KEGG:ns NR:ns ## COG: Cgl0050 COG1012 # Protein_GI_number: 19551300 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Corynebacterium glutamicum # 11 492 8 490 490 617 69.0 1e-176 MTVTAEREKALLESVPTGLLIDGEWRDASSGKTFDVKDPATGKVIASLQDANSDDAMAAF DAACAAQADWARTPAKERADILRRAYDLINERAEDFALLMTLEMGKPLAEARGEVTYGNG FLRWFSEEAGRHYGRTLTVPEGTLRMQVHHRPVGPCLLITPWNFPLAMATRKVGPAVAAG CTMVLKAAKLTPLTTQLFAQVMQEAGLPKGVLNVVAGSSASSISSPILQDRRLRKVSFTG STPVGVRLMKDAADNVLRTSMELGGNAPLIVFEDADLDAAVEGAFAAKMRNMGEACTAAN RFLVHEDVAEEFTQKFVAKLEALKPLRGTDPESTLGPIVDEGARDDIDQLVQDAVAAGGE VLTGGHKIEGDGYFYAPTAIKVEKGNPILQQEIFGPVAPIVTFSSEEEAIEMANDTEYGL ASYVFTKDQARMYRVAESIEFGLMGYNVGVISNPAAPFGGVKQSGLGREGGAEGIEEYTS VQYIGIADPWAAAQA >gi|289558341|gb|ADCD01000021.1| GENE 63 74659 - 75543 536 294 aa, chain - ## HITS:1 COG:ML0193 KEGG:ns NR:ns ## COG: ML0193 COG0313 # Protein_GI_number: 15827002 # Func_class: R General function prediction only # Function: Predicted methyltransferases # Organism: Mycobacterium leprae # 13 293 4 276 281 231 53.0 1e-60 MTPRPTDPPSPTGRIVLAATPIGNLGDASARLRELLAEADVIAAEDTRTARRLCAGLGVT PAGRVVAHHEHNEAASTQGLLDQVRGGATVAVVSDAGMPTVSDPGYRLVAAAVSAGLPVT CAPGPSAVTTALALSGLPTDRFAFDGFVPRKDGERRRWLTSLLTEARTVVAFESPQRLAD ALAVVVEVLGAERPVCVARELTKLHEEVVRGTAAEVQAWAAERHAGEGIRGEIVLVIGPA APGAEGEASEADAVAEVAVLVESGTRLKEAVAAVAGAHGMRSRELYQAVLAARG >gi|289558341|gb|ADCD01000021.1| GENE 64 75479 - 76483 714 334 aa, chain + ## HITS:1 COG:no KEGG:CA2559_07255 NR:ns ## KEGG: CA2559_07255 # Name: not_defined # Def: hypothetical protein # Organism: C.atlanticus # Pathway: not_defined # 64 279 18 229 251 72 24.0 2e-11 MGVAARTMRPVGDGGSVGLGVICQDRRGTAPSPPGPTPLRKVRTMPVEPRICITSGGDEI RLRSYVNHAIYAREHGLDYRLETGIDPQIVTKFDYKVAILRRLLPRYDWLVWMDDDAFFT DFEADNLRRLISEAERDDISLVIAEGPTEPNGFWSRINTGVMLLRNDETARTIVESTSTA DLATVRAWWDDDRDGLFTHGDQDQMWWAIQTGGHAERVRIVGHRELNSRGHYYEDSLTDA FVMHFTGYPDKELGIARFADRFAIGQEIVPEPLLDKYHVRVRSPLRGARRAWRERSVDTL AAVKYRLRPHKDRIRRVAGFLPPAVRRRWPLGHV >gi|289558341|gb|ADCD01000021.1| GENE 65 76530 - 78152 1388 540 aa, chain + ## HITS:1 COG:ML0192 KEGG:ns NR:ns ## COG: ML0192 COG1928 # Protein_GI_number: 15827001 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Dolichyl-phosphate-mannose--protein O-mannosyl transferase # Organism: Mycobacterium leprae # 44 539 22 509 510 243 35.0 1e-63 MEPVPATALAPRPAAVAADDGPFGVAALRARLGVSAAPLTRWHWILPLLVTVIAGVLRFT NLGHPDQLIFDETYYPKDAYSLLESGYERRWDEDVNDAFARGQAEPLEGAAYVVHPPLGK WLIGLGMLAFGPDNGVGWRFSAAVAGTLSVLLVALATQHLLRSVSLGAVAGLLLAVEGHH LVMSRIGLLDVFLSFFVLAAFAALLADRVHGRRLLAERLAHDVARRGRDALASGPWLGWR PWRLLAGVLLGAGCAVKLSGLAFMAAFGLLTVLWDMSARRTAGVRRWAWAGVEKDGLYAF LAVVGGGLVAYLASWTGWFVTEGGYYRDWHRDNPPEGLLAGLVPGPLRSLWHYHVESTTF HQGLTSPHDYAANPWTWPFMGRPVSYYYEGAEPGEGICPADAAGACSAAITDIANPFVWW TGLAAVLVCVWLLVRHRDWRAGALLGAYAAGQLVWFLWPERTMFFFYTIAYEPFLVMMIA LALSLLLRPGLRPGPRWGSALVLAYVTIAVAVSLFFLPVWIGDVIPYDQWRWRMWFSSWI >gi|289558341|gb|ADCD01000021.1| GENE 66 78269 - 80059 1609 596 aa, chain + ## HITS:1 COG:Rv2187 KEGG:ns NR:ns ## COG: Rv2187 COG1022 # Protein_GI_number: 15609324 # Func_class: I Lipid transport and metabolism # Function: Long-chain acyl-CoA synthetases (AMP-forming) # Organism: Mycobacterium tuberculosis H37Rv # 18 596 28 599 600 452 46.0 1e-127 MPPADSTITDLIVASCADRPDAPVYAVRNGAGGWVDVHFTAFLTQVRAVAAGLIARGVQP GDRVGLFSPTSYAWAVLDQAVWFAGAVSVPIYETSSAHQVEHIVTDSGLRVVAVGSDELG ERVAEAAGHAGVDVATFPLTDEGLAELAEAGAFVSDDAVEHARSLATLASPASIVYTSGT TGRPKGAVITHGNFVGAAINVLHFAREVVQWSPETTTSRTLLFLPLAHVLAHAVQVICLY ARIQVAHSGSPATLLGDLASFHPTWLLAVPRVFEKVEAGIEAKAQKGGTGRIYAAAKRTA IEWSTAVDEAEFGDGPGPSALLRARRALFDRLVYRKIREALGGEVISCVSGASALSPELV HFFRGAGIPIVEGYGLTETTAPATVNIPGAHRVGTVGLPVAGVTVKIAEDGEILIRGPVV FDGYHGMPQASAEAMEDGFFRTGDIGALDEHGFLRITGRKKDVIITAGGKNVYPTPMEEA LRQHRLIEHVVVVGENRPFVGALITLDSEALTQWALDRELSLTPAEAATDPTVLASIQEA VDQVNAGVSRAESIRRFRILDHPFTEDSGHVTQSQKLKRAQVIEDHAEDVEALYRR >gi|289558341|gb|ADCD01000021.1| GENE 67 80225 - 81253 844 342 aa, chain + ## HITS:1 COG:XF1732 KEGG:ns NR:ns ## COG: XF1732 COG1902 # Protein_GI_number: 15838333 # Func_class: C Energy production and conversion # Function: NADH:flavin oxidoreductases, Old Yellow Enzyme family # Organism: Xylella fastidiosa 9a5c # 1 338 30 367 368 310 53.0 2e-84 MAPLTRQRAGEDGVPTELHAEHYAQRATAGLLVTEGAFPSFRSRAFPGQTGLADDAQTDG WRAVAQAVHEAGGHVFVQVMHGGRMCHPDLLRGAEPEAPSAIAPGVPVRGFSGKMEGPVP SALDTEELPRVVAEFADAARRAVEAGLDGVEVHGANGYLLHEFLAPSSNTREDAYGGSPE NRARLTVEVVRAVAQAIGAERTALRISPEHNVQGTIEEDRADVLATYDALLAGLADLDLA YLSVIHQDVAGDLAAHLRESFSGPLVLNSGFGAVTGLEEARRIVEDGLADAVAVGRELIA NPDLARRWREGLPLNEPDPTTFYTGGAHGYTDYPFVDGSPSS >gi|289558341|gb|ADCD01000021.1| GENE 68 81339 - 82559 1081 406 aa, chain - ## HITS:1 COG:no KEGG:Mlut_05320 NR:ns ## KEGG: Mlut_05320 # Name: not_defined # Def: integral membrane protein TIGR01906 # Organism: M.luteus # Pathway: not_defined # 1 406 1 406 406 580 94.0 1e-164 MASHQAGRGRDERAGAEDFESGLDYGAFVQDDAADDPNRTQALPAMDRDDDGGAQHTSAL SPEDLAALRGGDAAAADRRDADRPAPDADRDIVASRAVPEGDRRQLPGADELGPLSAAVG ARAAGSSAAVPVDRYPEDGTAAPVTQEAALQGPTPEERARLPKAGPRLAQVLLAILAPLA LLLAAVRLVASPVFLWLEYHRPGFPADRFGFTLADRMHYGSAGLDYVTNLAGPRYLSSLT HQGAPLFAEVEVDHMTDVKTVLWIAAAALVVLVVVCALLIASLLRTSPGGVRRALFAGAV WLPLAVIALAVLAVLGWETFFAGFHSLFFADGTWTFSVRDALIRLYPEQFWVDAAVVVGL VTLLASLVTLVLTWPTRRRRERTADQRSAFESTRLRWAREEDAQLR >gi|289558341|gb|ADCD01000021.1| GENE 69 82607 - 84166 1506 519 aa, chain - ## HITS:1 COG:MT3346 KEGG:ns NR:ns ## COG: MT3346 COG0499 # Protein_GI_number: 15842837 # Func_class: H Coenzyme transport and metabolism # Function: S-adenosylhomocysteine hydrolase # Organism: Mycobacterium tuberculosis CDC1551 # 29 519 20 495 495 660 67.0 0 MTETSAEFRTPDVDPAFANRTTVPGASFDFTVRDLSLAEAGRHQIRLAEHEMPGLMSLRE EYGETQPLKGARIAGSLHMTVQTAVLIETLTALGAEVRWASCNIFSTQDEAAAAVVVGSG TPEDPQGVPVFAWKNESLEDYWWTASQILTWPGADEDPERGPNMILDDGGDATLLVHKGV EFEAAGAVPSATEDDPEEYRIILETLRRSLARAPQHWTRTASTLRGVSEETTTGVLRLYQ LAQEGRLLFPAINVNDAVTKSKFDNKYGIRHSLPDGIMRATDVLIGGKVAVVCGYGDVGK GAAEALRGQGARVIVTEIDPICALQAAMDGYQVARLEDVVGEGDIFVTTTGGKDIIMAEH MAAMKDKAIVGNVGHFDNEIDMAGLARIPGVVKTEIKPQVHEWTLDGGTEAERSIIVLSE GRLLNLGNATGHPSFVMSASFTNQVMAQIELFGGSTGTGALTGEHYEKRVYTLPKVLDEK VARLHLDALGVGLTELTKAQAEYLGVDVAGPFKADHYRY >gi|289558341|gb|ADCD01000021.1| GENE 70 84212 - 84514 249 100 aa, chain - ## HITS:1 COG:no KEGG:Mlut_05290 NR:ns ## KEGG: Mlut_05290 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 100 1 100 100 177 96.0 1e-43 MRRCSKTGCQSPALATLTYNYADSQVVIGPLSRRAEPHTYDLCGEHARRTTAPRGWEVLR LELPEHYEAVDADGGVRTVPTRPVAVPPSRPGLRVVRDGD >gi|289558341|gb|ADCD01000021.1| GENE 71 84577 - 85122 430 181 aa, chain + ## HITS:1 COG:no KEGG:Mlut_05280 NR:ns ## KEGG: Mlut_05280 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 181 1 191 191 227 79.0 1e-58 MTAPASSDPLDPLPFRAGDAAGAEPGVEGGPAEAGVTSPAGRGVRDRRGRGLRHPRPFGA RSERGRGEALLTAVEKAVDRLGSLDAPGLRHVTARVERIPDRLDERLRELHAGQERDEEA LFARAERQGRDGVLITLFERPLRDAADPADLEGAVYGVALSRCAEALGVDPQVLDPSWGR G >gi|289558341|gb|ADCD01000021.1| GENE 72 85178 - 85705 471 175 aa, chain - ## HITS:1 COG:no KEGG:Mlut_05270 NR:ns ## KEGG: Mlut_05270 # Name: not_defined # Def: transcription factor WhiB # Organism: M.luteus # Pathway: not_defined # 1 163 1 164 176 236 83.0 3e-61 MEQTQRVEDTHRADPAQAPTPRPRSVPSDWFLDPADPQAGVPGASLEDQATAFLTAHDLD DETGTPAATVTALFPGDARPVEAVPVSADWAAIPGVTTEPVEGELAWQADALCAQTDPEA FFPEKGGSTRDAKRVCEACTVKDACLEYAMANDERFGIWGGLSERERRRLRRARA >gi|289558341|gb|ADCD01000021.1| GENE 73 85876 - 86499 421 207 aa, chain + ## HITS:1 COG:no KEGG:Mlut_05260 NR:ns ## KEGG: Mlut_05260 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 207 1 217 217 239 76.0 6e-62 MVSLSAPRSTGPLVLRLASSPRPALVQEPGAPDEPGAVDQRIELSGRVTVNWAAKFAGLL GAEGVGAGDAVALDLPVHWLSHALALGVLCAEAEPALEGDSPAAVLTDRPEAWPDPSVTV FAVALPRGLEPEFDGPAADPAVVDVAAEIRAQPDALPGPVDHVRPASIPAGVDVAPDDDG PRPRLTWAGVRAALEAWDAGRAVTVRP >gi|289558341|gb|ADCD01000021.1| GENE 74 86551 - 88455 1056 634 aa, chain + ## HITS:1 COG:Cgl0691 KEGG:ns NR:ns ## COG: Cgl0691 COG0026 # Protein_GI_number: 19551941 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) # Organism: Corynebacterium glutamicum # 237 619 2 381 387 302 50.0 2e-81 MPAARTQLVLAQHGHLAGDDREVVGEAGLHVQLLLEHPEPVGEVAEHGAEEQADHVAGDE QAGRVGHAQQVLRDRHAAGLDAQPDRVHDQEHHELARLVRGALVPERPVAVGDPAEQGGD DAAHDLGLDVGPLERAGHHPPEDERVHHERGRTDGAELGHLPPQQGGHPGQAAPEIGQHG RGLLGSGRGCARGPDPRRAGEHCSRAPGARPPRIRRRPPLRDGVLSRSDYPVRVTSPRLG VIGGGQLARMMAGAAAELGVPFRVLAEAPDASAAQVAPHVVGDHADLADLRAFAATVDVV TFDHEHVPTEHLRALQEAGVAVRPGPEALQHAQDKLVMRAAVERLGLPNPAWAPVDDLEA VLAFGDEHGWPMILKTARGGYDGKGVLKLDDPDDARASAADGTLAAWLGAGIAPLLAEAL VPFSRELSAQVARTPSGEVAVYPVVDSVQVAGVCDLVVAPAQDLDPAVAAAATAAAVRLA EELDVTGMLAVELFETPGVGPGFQVNELAMRPHNSGHWSMDGAVTGQFEQHVRAVLDLPL GETTPRGAGVVMKNVLGGAREDLHAGSVVALAAHPQAKVHLYGKDVRPGRKVGHVNVVAD HGLSLEEAVRTAESAAALLRDDAPTTGTETEARP >gi|289558341|gb|ADCD01000021.1| GENE 75 88452 - 89009 517 185 aa, chain + ## HITS:1 COG:ML0736 KEGG:ns NR:ns ## COG: ML0736 COG0041 # Protein_GI_number: 15827313 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase # Organism: Mycobacterium leprae # 17 178 5 162 171 168 66.0 5e-42 MTATPQTPAQPLQDDAPVVSVVMGSDSDWPVMSAAAEALRELDVPVEVGVVSAHRMPHEM VEFGARAHERGIRVIVAGAGGAAHLPGMLAAVTPLPVIGVPVKLKSLDGMDSLLSIVQMP AGVPVATVSIDGARNAGLLAARILASADTAEGDRLRAALAEHADELNAQARAKGARLRER MAADR >gi|289558341|gb|ADCD01000021.1| GENE 76 89009 - 90622 1230 537 aa, chain + ## HITS:1 COG:BH3670 KEGG:ns NR:ns ## COG: BH3670 COG1316 # Protein_GI_number: 15616232 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus halodurans # 175 414 58 260 304 75 28.0 3e-13 MSPATGSVPAGHAQPDPLRDPRVASPTERTRRALILTALTLLVPGGAQLVAGSRRLGRVA LRVTVTVWAVLIVGLLWWLVSRASLISLMARDGVLLGLAVVLAALAVGWAVLWVDTFRLI RPHLLAPGARKITAAVTALALVLTSGALLYGGWAANTSRGALGEVFQEGPAVPEAEGRYN ILVLGADAGEGRQGLRPDSMHVVSVDARTGAIVMFSLPRNLQDAPFVEGSPLWDVYPNGF DCGDECILNALYTDVEEHHADLYPDAEHPGAEAMKDAAGGILGLDISGYALMDMGGFAQL IDAMGGVDVVSGGYVVHRGVRPDGAWGNIWWEPGTHHFNGDDALAFARSRHWSTDYARIR RQQCMQAAMLEQFSPATVLTRFEGILAAGQQIVTTDLPQSQLGTFVDLAERSRGQKMRRL TIGPPDFGDTDTHFTTYPDYDLVHRRVDEMLADASVTAGSDPTGVSATPLLTVLAVVAQE TEAPDVDEDDPATWPAPPTRSDGEPFTAEDLMTAEDLGQEDVLNHASSTNGLCVPAP >gi|289558341|gb|ADCD01000021.1| GENE 77 90664 - 91908 1086 414 aa, chain + ## HITS:1 COG:Cgl0726 KEGG:ns NR:ns ## COG: Cgl0726 COG1482 # Protein_GI_number: 19551976 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannose isomerase # Organism: Corynebacterium glutamicum # 1 386 1 375 394 250 42.0 3e-66 MHVLKPVIRDYAWGSPTLLADLQGREPTGRPEAELWLGDHPGAPCVAVVADGAHVGLDEV VAGDPEHCLGPAAPEGRLPFLMKLLAAGAPLSIQAHPTLEQARAGHAAEEAAGVPADAPE RNYKDANHKPEMLLALTPFAAMCGFRSPEVSSDSFEALARALTERADGDTSAVAVAAARI SQTLAAGDLEDAFTSILDPDSAWGSPGAVAQVVDVLRAAPDLAERDPSLATALEVAQHHP DDPGVVVAILLNRVDLAPGQAIHLPAGNVHAYLHGLGVEVMAASDNVLRGGLTPKHVDVP ELRRVVTFEALPVPSTEPERVADSVVAFRPPFEEFELLQATLEDDAVHGLDVHGPGIAVV TRGTASLALAGQEIELGPGEAVFLPAAETASGPLAVRAAAGAPATVHVAGLPRG >gi|289558341|gb|ADCD01000021.1| GENE 78 91932 - 92954 960 340 aa, chain - ## HITS:1 COG:MT1131 KEGG:ns NR:ns ## COG: MT1131 COG1494 # Protein_GI_number: 15840538 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins # Organism: Mycobacterium tuberculosis CDC1551 # 22 333 1 312 328 363 60.0 1e-100 MTSASSEKTGYENHVPDRNLAMELVRVTEAAAIAASPWVGYGDKNKADGAAVDAMRAFMD TVAMDGTVVIGEGEKDEAPMLFNGEQVGDGSGAAVDVAVDPIDGTRLTAMGYNNALSVFA VAERGTMFDPSAVFYMDKLVVGPEAADFVDMRLPVKQNVNLVAKALDKPVSQVTVCVLDR PRHEGLVKEIRQAGARVKFILDGDVAGAIAAARPDTGVDMMMGIGGTPEGIVTACAIKAT GGIIQGRLAPTDDAEKQKALDAGLDLDAVLTTNELVTSDHCYFAATGITDGDLLRGVRFA DGRVHTQSIVMRSSSGTVRTVDAEHDVKKWSKWLGDRDAR >gi|289558341|gb|ADCD01000021.1| GENE 79 93062 - 93652 426 196 aa, chain + ## HITS:1 COG:no KEGG:Mlut_05190 NR:ns ## KEGG: Mlut_05190 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 196 1 196 196 325 97.0 4e-88 MLTVSSADPHAPAPRPVLTATQAQRARQPWMAMVLSLAALLAIVAVVLLLNPEPPQRPRE DRVDVAAEAATIPHDDGDLPALAPEVPESWYANYARLQKLDGVSTWDVGWVVTDTVFAGL QQAEDVDPTWVSLRVDQVPTSETIEIDGIAWDLHADPKKPERRLVAEVDGSTVVLTTTGD QAVLEDLAHGVAKETR >gi|289558341|gb|ADCD01000021.1| GENE 80 93649 - 94320 544 223 aa, chain + ## HITS:1 COG:MT3694 KEGG:ns NR:ns ## COG: MT3694 COG0288 # Protein_GI_number: 15843201 # Func_class: P Inorganic ion transport and metabolism # Function: Carbonic anhydrase # Organism: Mycobacterium tuberculosis CDC1551 # 21 212 3 194 207 220 58.0 1e-57 MTPHTRPETTPAPDVVVPTSDLTPAEAWEVLAEGNRRFVAGEPSHPNQNAERRSDLTAGQ APVAVIFGCADSRLAAEIIFDLGLGDVFVVRTAGHVIDDAVLGSIEYGVDVLEIPLVIVL GHNSCGAVTATVESYISGTMPRGFVRPLVERIIPSVLAGRRRGLEEVDEFVAEHVDQTCD HLLETSQSVRAAVESGRTAVVGLTYSLSEGTARPGRVHGDLAV >gi|289558341|gb|ADCD01000021.1| GENE 81 94376 - 95797 1411 473 aa, chain + ## HITS:1 COG:Cgl0981 KEGG:ns NR:ns ## COG: Cgl0981 COG0114 # Protein_GI_number: 19552231 # Func_class: C Energy production and conversion # Function: Fumarase # Organism: Corynebacterium glutamicum # 6 473 2 464 469 541 63.0 1e-153 MTAENTDQQFRIEHDTMGEVKVPVNALYRAQTQRAVENFPISGKGLEPAHIHALAQVKKA AAKANAELGIISQERADAIVAAADQVIAGDHDDQYPIDVFQTGSGTSSNMNTNEVLATLA TRALKEAGSEDEVHPNDHVNASQSSNDVFPTSVHVAVTAALVNDLVPALDHLAVSLEKKA EDFAGIVKSGRTHLMDATPVTLGQEFGGYAAQVRYGIERIQSALPRVAEVPLGGTAVGTG INTPKGFSARVIELLAEETGLPLTEARNHFEAQANRDGLVEASGQLRNIAFSIMKINNDL RWMGSGPNTGLGEIALPDLQPGSSIMPGKVNPVICEAAIMVCAQVIGNDTTVALSSTNGA FELNVGIPVMAANLLESIRLLANTTRVMADKMIDGIEANEERCAFLAGASPSIVTPLNKV IGYEAAAKIAKHAVANKMTVREAVVDLGYVERGEVTEEQLDKALDTMSMTHPE >gi|289558341|gb|ADCD01000021.1| GENE 82 95888 - 96391 419 167 aa, chain - ## HITS:1 COG:no KEGG:Mlut_05160 NR:ns ## KEGG: Mlut_05160 # Name: not_defined # Def: type IV leader peptidase # Organism: M.luteus # Pathway: not_defined # 1 154 1 154 167 184 94.0 1e-45 MSGLGWAWTHGATATAVLWSLGLVWFAVCAGVLVRTDLREHRLPNRWTLRLALGGLAAMT GGALLAGRGDLALCSLLGGLGYTVAMLALHVLSRGGLGMGDVKLAGGLGVYTGVLGPTAV LAAGVGAILLGGVVAGVLVLAGRATGRTALPFGPAMVAAAAGVLVLA >gi|289558341|gb|ADCD01000021.1| GENE 83 96735 - 98183 1304 482 aa, chain - ## HITS:1 COG:ML1951 KEGG:ns NR:ns ## COG: ML1951 COG1875 # Protein_GI_number: 15828053 # Func_class: T Signal transduction mechanisms # Function: Predicted ATPase related to phosphate starvation-inducible protein PhoH # Organism: Mycobacterium leprae # 34 479 4 428 433 540 65.0 1e-153 MVAELVEHAQTRQEPSSRPGQARAEAGPAEAAGLRTYVVDTSVLLSDPRALLHFAEHEVV LPLVVVSELEAKRADPDLGYYARTALRLLDDLRGRHGALDQPVPITPEGGTLRIELNHVS VDVLPLGIRGTDNDSRILAVAKALADEGAMVTVVSKDLPMRVKAAAMGLAADEYRHELVR DSGWRGTVSLSVAQERLDALYDDGEVDLAGIPLGSLAGTGVETGPGEAPAEADRLPVNTG LVLTAPRGSGLARVGEGGRARLVRGDRDVFGLHGRSAEQRLAIELLTDPGVGIVSLGGRA GTGKSALALCAGLDAVMERREHRRVVVFRPLYAVGGQDLGYLPGSEGDKMGPWAQAVFDT LGALVSPSVVDEVVDRGMLEILPLTHIRGRSLHDAWVIVDEAQSLERNVLLTVLSRMGRN SKVVLTHDVAQRDNLRVGRHDGIAAVVERLKGHPLFGHVTLTRSERSPIAALVTDVLEEG RA >gi|289558341|gb|ADCD01000021.1| GENE 84 98411 - 99052 520 213 aa, chain + ## HITS:1 COG:Rv1337 KEGG:ns NR:ns ## COG: Rv1337 COG0705 # Protein_GI_number: 15608477 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein (homolog of Drosophila rhomboid) # Organism: Mycobacterium tuberculosis H37Rv # 62 208 68 224 240 85 40.0 9e-17 MHRPSPGLPDLPGSPAPAPTLAERAGGRLLGALAPTAMLIAAMWVAQFVLIFLGRVIIPG VGLIPRRLAGLDGVLFSPVLHAGWAHLIGNTTALLVLGPLAALVSRRPVALLVCAWLGSG LLTWVIGTPGVHIGASGIVYVLIAFLIVYGIAVRRFGAVVVSVLVALTHLGSSLIGLLPA PGISWTGHLAGAVVGVLLGLWWGRADRQVPNRR >gi|289558341|gb|ADCD01000021.1| GENE 85 99031 - 100677 943 548 aa, chain - ## HITS:1 COG:MT1118 KEGG:ns NR:ns ## COG: MT1118 COG0020 # Protein_GI_number: 15840523 # Func_class: I Lipid transport and metabolism # Function: Undecaprenyl pyrophosphate synthase # Organism: Mycobacterium tuberculosis CDC1551 # 296 547 10 261 262 263 58.0 6e-70 GPRRCRAGRRPPTPTHSGDDEHRPVDGDGVAHEAGHREGVEQLVEAEPLAVDRGGLQRVE DRARDVRDAAGHDQPPRRRIRGEEVAQVQQRRQPQHHVHRRVEPARGVRPQHPEPDAGHG PHPYQGEQHTRPVRRQQGQGERRVGAGDDQHDVRVVQPLEDTGDHLVPLHQVVRRRDREQ QQARHGVDRAGPPQRRGRREHDEHDAGRERQRRHDRVGPAPQSGLVQRMLGVADALDAPA QAAGGVGVGEGCHGVHASIVVGRPGAGARDGRCVSRAYPGGSQDRPRGERAVGRPEAFYR LYERRLTRGLDPERLPRHIGVLVDGNRRWARAFGASTQQGHQAGAERILDFIGWCDEAGI PVVTLYMLSTENLRRPAEELAPLLEIIQTTAERLAQPAEGRAPVCVQPVGAVDLLPEPMA RRLAEVAEQTQGHDGVHVNVAVGYGGRQEILDAVRELLRDEHALGHSAAEVAESVTVEQI ADRLYTRGQPDPDLVIRTSGEQRLSGFLLWQSAYSEFYFCEAMWPAFRKVDFLRALRDYG SRQRRFGT Prediction of potential genes in microbial genomes Time: Thu May 26 07:02:53 2011 Seq name: gi|289558326|gb|ADCD01000022.1| Micrococcus luteus SK58 ctg1119142780350, whole genome shotgun sequence Length of sequence - 12390 bp Number of predicted genes - 14, with homology - 14 Number of transcription units - 7, operones - 5 average op.length - 2.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 26/0.000 - CDS 1 - 1156 991 ## COG0330 Membrane protease subunits, stomatin/prohibitin homologs 2 1 Op 2 . - CDS 1218 - 1694 457 ## COG1585 Membrane protein implicated in regulation of membrane protease activity 3 2 Op 1 . + CDS 1844 - 3949 1360 ## COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family 4 2 Op 2 . + CDS 4009 - 4557 461 ## Mlut_12050 hypothetical protein 5 3 Tu 1 . - CDS 4574 - 4819 171 ## Mlut_12060 hypothetical protein 6 4 Op 1 . - CDS 5014 - 5664 283 ## Mlut_12070 hypothetical protein 7 4 Op 2 . - CDS 5615 - 5818 108 ## gi|289704943|ref|ZP_06501359.1| hypothetical protein HMPREF0569_2369 8 5 Op 1 . + CDS 5774 - 6190 240 ## Mlut_12090 hypothetical protein 9 5 Op 2 . + CDS 6259 - 6540 231 ## COG1522 Transcriptional regulators 10 6 Tu 1 . - CDS 6595 - 7545 777 ## COG0547 Anthranilate phosphoribosyltransferase 11 7 Op 1 4/0.000 + CDS 7694 - 8482 638 ## COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3 12 7 Op 2 4/0.000 + CDS 8604 - 9374 684 ## COG2010 Cytochrome c, mono- and diheme variants 13 7 Op 3 28/0.000 + CDS 9444 - 10520 1025 ## COG0723 Rieske Fe-S protein 14 7 Op 4 . + CDS 10604 - 12220 1345 ## COG1290 Cytochrome b subunit of the bc complex Predicted protein(s) >gi|289558326|gb|ADCD01000022.1| GENE 1 1 - 1156 991 385 aa, chain - ## HITS:1 COG:MT1533.2 KEGG:ns NR:ns ## COG: MT1533.2 COG0330 # Protein_GI_number: 15840949 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Membrane protease subunits, stomatin/prohibitin homologs # Organism: Mycobacterium tuberculosis CDC1551 # 4 324 8 356 381 317 55.0 2e-86 METLIVLVVLAVLAAVIVASSVKIIPQARTANIERLGKYNRTAGAGLTLIIPFVDRMLPM VDMREQVVSFPPQPVITEDNLVVSIDTVVYFQVTDAKAATYEIANYIHAVEQLTTTTLRN VVGGMNLEEALTSRDSINSQLRGVLDDATTRWGLRVSRVELKAIDPPMSIQDSMEKQMRA ERDRRAAILTAEGTKQAAILTAEGERQSQILSAEGEAQARVLRANAEAEAIEVVFDAIHS GGADSEVLAYQYLQSLPKIADGQANTMFVVPAELTRALQGLGEAFAPGDGGRPTPEHAPR RRDSGDRAGEPGAEHVGVTPERARRPRGSRPTTADALRASGVMDAMTAGAVTAEDMPQTS LDEALATPQEIEPDPSAGRTPGTRP >gi|289558326|gb|ADCD01000022.1| GENE 2 1218 - 1694 457 158 aa, chain - ## HITS:1 COG:MT1533.1 KEGG:ns NR:ns ## COG: MT1533.1 COG1585 # Protein_GI_number: 15840948 # Func_class: O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Membrane protein implicated in regulation of membrane protease activity # Organism: Mycobacterium tuberculosis CDC1551 # 11 145 6 140 144 60 38.0 2e-09 MEWIEANAGWLWLVLAAGLAGVELLTLDLVFLMIAAGAGAAGVVALVGGPPALQLAAFAA VALLMLAAVRPVALRHLRQDTGAGASYLDTLPGRRVAAQGAITGDAGTLAVDGDTWSARV EPGAPEVAPGDEVTVLRIDGATLVVRPLPRIDWEADGA >gi|289558326|gb|ADCD01000022.1| GENE 3 1844 - 3949 1360 701 aa, chain + ## HITS:1 COG:PA4814_1 KEGG:ns NR:ns ## COG: PA4814_1 COG1902 # Protein_GI_number: 15600007 # Func_class: C Energy production and conversion # Function: NADH:flavin oxidoreductases, Old Yellow Enzyme family # Organism: Pseudomonas aeruginosa # 5 359 7 364 364 346 55.0 9e-95 MTSAPVAVSPLLQPITLGPLTLPNRVVMASMHVGLEDRHDDLPQLAAFYAERARGGVGLI VTGGLGVVPEGAVTLGGGMLASAEDARAHRVVTDAVHAAGGRILAQLLHAGRYAPSPDLV SASAVRAPISRHTPREMTTADIERTVSAFARAATLALEAGYDGVEIMASEGYLLNQFLAP ATNRRADEYGGDAERRRRFPAAVVAAVREALGERGVLSVRTSAADLVPDGQTRAEIADTA RAFEAAGADVLMTGIGWHESRVPTIVTSVPRAAFLAASADLTAAVDIPVIASNRLTTPAE AEEALTSGNAALVGLARPLLADPDWMAAISDPRARTLTPCIACNQACLDHVFTGAKVSCL MNPRAGRETEPEYAAPVPVALGRRRRIAVVGAGPAGLTAAERAARFGHEVTLFDRHAEPG GQFRLARRIPGKEEFGPALEHLAARAAAAGVTLVTGEEVSAQALLTDDGQPGYDEVLLTT GVRPRPIALPGTGEPGAPAVHAYDDVVLGHVDVGPRVAVIGAGGVGVDVAEALAAGTERP DGTPETQEHWRARWGVALTSETPGQLAKPAAARPGREVHLLQRSPGPIGARLRPTTGWVH RAELRQHGVHLHSGVTYEGVGPDGLRVTAPSPEDPEARVALTLDVTDVVVCAGQVSETDL VEDLVAAGYSPEAVRLIGGAAEARELDAYRAMDHAVRAVQG >gi|289558326|gb|ADCD01000022.1| GENE 4 4009 - 4557 461 182 aa, chain + ## HITS:1 COG:no KEGG:Mlut_12050 NR:ns ## KEGG: Mlut_12050 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 182 1 182 182 307 93.0 9e-83 MALIYTARLDPDKPEWIRRRLVAHGLPADVTAEKVGSYRFDDPAGEIGVESMVVRVGDRL YQTAFAYRGEAPAEGDVVAEAEHSVLGHRWIVDAATDPDARRIVAAAVRGEIPQARLEMH DESGTYLETRAPDLTLRVVGADATGELEVPVELLETGETDVDGPRCLVAEGDGVRAVVAR LS >gi|289558326|gb|ADCD01000022.1| GENE 5 4574 - 4819 171 81 aa, chain - ## HITS:1 COG:no KEGG:Mlut_12060 NR:ns ## KEGG: Mlut_12060 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 81 1 81 81 131 98.0 8e-30 MTIMTDQRDRPLHATIAVVLAIATAGYLAPWAVAAVRGRSNVWAVFWVNLLTGWTVLGWC IALYMSLTSHRRLRSWGPRGL >gi|289558326|gb|ADCD01000022.1| GENE 6 5014 - 5664 283 216 aa, chain - ## HITS:1 COG:no KEGG:Mlut_12070 NR:ns ## KEGG: Mlut_12070 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 216 1 217 217 279 93.0 4e-74 MVSVHLVPIRPTAATAEDARRLATALRDDPRPDAAVTAAMWLGDESDPGTDAAPHDGELA VVLDDAAASVGLALWAVRTGSWAVMLDPECGSDKDPALSYLPPAERRRARRAPGRLVLPA EGRPGRASEAGREADLRCAEATLQLVAAVERRRSADQHAAGRLVEAGASQREAAAELGIS QQAVHSRLRHGLWHESRTAVAAVLPLLERLSADPGE >gi|289558326|gb|ADCD01000022.1| GENE 7 5615 - 5818 108 67 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|289704943|ref|ZP_06501359.1| ## NR: gi|289704943|ref|ZP_06501359.1| hypothetical protein HMPREF0569_2369 [Micrococcus luteus SK58] # 1 67 29 95 95 84 100.0 2e-15 MLGGYDTTGGGGGRHASSLAHREVEADRTAGGGSANVPYDKTLPLSEIDSGHGVRTSGAH PTDRRHG >gi|289558326|gb|ADCD01000022.1| GENE 8 5774 - 6190 240 138 aa, chain + ## HITS:1 COG:no KEGG:Mlut_12090 NR:ns ## KEGG: Mlut_12090 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 138 1 138 138 175 94.0 5e-43 MTSSPTARRVVPAEHRAPRGALSALAVDLLLTVLFVALGQGQHATERGPVGLLVTAAPFL AGLLLMTGLTSGHRTWARVWPHGVIVWLGTVAVGMVLRVAFGLGGAPVSFVLVALGVLGV LLLGRRAVTAWLVRRTRR >gi|289558326|gb|ADCD01000022.1| GENE 9 6259 - 6540 231 93 aa, chain + ## HITS:1 COG:DR2287 KEGG:ns NR:ns ## COG: DR2287 COG1522 # Protein_GI_number: 15807278 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Deinococcus radiodurans # 1 92 4 95 96 97 55.0 4e-21 MVTAIVLIKTDKSSIPETAETLAALEGVGSVYSVTGAWDLVAMVKVRRYEDLADVIADHL SKVDGIQDTETMLAFRTYSSEDLGEGWALGFDS >gi|289558326|gb|ADCD01000022.1| GENE 10 6595 - 7545 777 316 aa, chain - ## HITS:1 COG:AGc3100 KEGG:ns NR:ns ## COG: AGc3100 COG0547 # Protein_GI_number: 15888992 # Func_class: E Amino acid transport and metabolism # Function: Anthranilate phosphoribosyltransferase # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 4 314 29 334 342 213 42.0 3e-55 MGEMMAGDATEGQVGGFLLALAAKGVTVPELRGLTEAMVQAANPVHVPGETLDVVGTGGD RLGTVNLSTMSSLVAAGAGARIVKHGNRGASSTAGAADVIEALGVDLSMPARKAEECAEA VGITFLFAQNYHPSMKYVAPVRKQLGVPTVFNFLGPLSNPAQVTAQALGCSSEAMVPLLA QVLADRGVRGFVFRGADGRDKITTSGPSTVMEVRDGVRTHELDPRELGIDLAPVQALAGR DGAYNATLVRALLAGEKGPIRDAVLLNAAAGLTAWDRDADAPLMERLAANMTRAAESIDS GAARDVLDRWVAFSRS >gi|289558326|gb|ADCD01000022.1| GENE 11 7694 - 8482 638 262 aa, chain + ## HITS:1 COG:Cgl2144 KEGG:ns NR:ns ## COG: Cgl2144 COG1845 # Protein_GI_number: 19553394 # Func_class: C Energy production and conversion # Function: Heme/copper-type cytochrome/quinol oxidase, subunit 3 # Organism: Corynebacterium glutamicum # 67 262 11 196 196 185 53.0 6e-47 MSGAARPEPEHPLDATHRLPLKPPDGADDLSCDTVSSIYRPGGVWGHNGWVTTANPTLHQ PTTGLPSRPNMVQVGTMVWLASELMFFGGLFAMYFTLRSTSPELWAEHTAILNVPLAAVN TTILVLSSVTAQFGVLAAERLQPRRTGGFLQFGKWGMVEWFILTFIMGSIFVAVQSYEYA VLVSEGVTVAANAYGSAFYITTGFHAIHVTGGLIAFLFIIGRAYMARRFGHHEATSAIVV SYYWHFVDVVWIALFFIVYFLK >gi|289558326|gb|ADCD01000022.1| GENE 12 8604 - 9374 684 256 aa, chain + ## HITS:1 COG:Cgl2143 KEGG:ns NR:ns ## COG: Cgl2143 COG2010 # Protein_GI_number: 19553393 # Func_class: C Energy production and conversion # Function: Cytochrome c, mono- and diheme variants # Organism: Corynebacterium glutamicum # 9 255 47 308 308 206 43.0 3e-53 MGLALLLLGLLVTGGLYSVASTVNQAQAATQVTAAASADDISEGEKLFNANCASCHGTGA AGGPSGPSLIGVGAASVDFQVGTGRMPMQMNGPQAQVKPNQFNDEQTAQLAAYVASLGAG PAVPEDEYLDVNHEDVDITRGGDLFRINCAMCHNAAAAGGALTRGKYAPSLHGVEEKHIY EAMETGPQNMPVFSDSNIKPEDKRDIIAYLKTIENQGSPGGLALGSLGPVSEGLFIWTAG LALIIGFMVWLTSRSS >gi|289558326|gb|ADCD01000022.1| GENE 13 9444 - 10520 1025 358 aa, chain + ## HITS:1 COG:ML0880_2 KEGG:ns NR:ns ## COG: ML0880_2 COG0723 # Protein_GI_number: 15827403 # Func_class: C Energy production and conversion # Function: Rieske Fe-S protein # Organism: Mycobacterium leprae # 253 357 83 190 192 134 54.0 3e-31 MGEKGFEGTEHRSGSLEHAGEDAPRYAIDNPGLPPHRPRLADEDPKAAKRAERQVSVMFL ISIVGTVLFFIGYFGVGQIGNGEAFSKIYLQNLLLGLGTALAMFGIGIGVVHWAKTLMPD HETVEDRHEIRSEDDRVAATGMISEILDESQIKRRPLLRNTLIGAALLAPLPFIAVFRDL DDSDNFSDQEAHNFGPERLRHTMWAEGVRLVRDPTGSPIKASDVTLGSAVHVIPDGLNDL GPDKLNQKAKAVVLLMRLDPAKVKITPGREDWNVDGIFAYSKVCTHVGCPIALYEQHTHH LLCPCHQSTFDLTQECKVIFGPASHALPQLPITVDDEGFLVAQSDFHEPVGPVYWERG >gi|289558326|gb|ADCD01000022.1| GENE 14 10604 - 12220 1345 538 aa, chain + ## HITS:1 COG:Cgl2141 KEGG:ns NR:ns ## COG: Cgl2141 COG1290 # Protein_GI_number: 19553391 # Func_class: C Energy production and conversion # Function: Cytochrome b subunit of the bc complex # Organism: Corynebacterium glutamicum # 11 455 26 458 539 474 52.0 1e-133 MSPIVKFFARKIFPDHWTFMFGEVALYSFVILLLSGAFLTFFFDPSMSEVVYNGAYAPLR GIEMSAAYASTLDISFDVRGGLFMRQLHHWAALMFVAAMSVHMLRVFFTGAFRRPRELNW VVGCFLLMAGWAAGFTGYSLPDEVLSGNGLRIIDGILKSLPIVGTYLSAFFFGGEFPGHS IIGRLYALHIMVVPAAILLLIGIHLFMVVVHKHTQYPGPGRTENNVVGYPVGPVYAAKAG GFFFIVFGVLALIASTVTINANWNYGPYDPSPVQAGTQPDWYIGVFDGALRLMPGMIGDY SFLWNVPMPWGSSVSLPMGVLVPLIPVGVLLIGMVTWPWIERWITKDDTEHHLLDRPRNA PARTGIGVAAVVWYCVMWAAASSDLIATHFRLSLNDVLYVLRALFFLGPVIAFIVTRRIC LSLQRKDRELVLHGHEAGVIEMSPEGGFHERHRQLTDYELYRLVSFEDRRPVAAIPSRNG KVGMLEKARAGLNRMFYQERVAPVSREELVEARTHGQHGHEEHPVELGHGSDAPRLER Prediction of potential genes in microbial genomes Time: Thu May 26 07:03:25 2011 Seq name: gi|289558287|gb|ADCD01000023.1| Micrococcus luteus SK58 ctg1119142780357, whole genome shotgun sequence Length of sequence - 44584 bp Number of predicted genes - 36, with homology - 34 Number of transcription units - 21, operones - 8 average op.length - 2.9 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 1138 978 ## COG0206 Cell division GTPase - Term 1392 - 1435 -0.4 2 2 Tu 1 . - CDS 1534 - 2262 416 ## Mlut_13580 cell division septal protein 3 3 Op 1 26/0.000 - CDS 2316 - 3803 1228 ## COG0773 UDP-N-acetylmuramate-alanine ligase 4 3 Op 2 31/0.000 - CDS 3800 - 4930 1016 ## COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase 5 3 Op 3 25/0.000 - CDS 4927 - 6219 1158 ## COG0772 Bacterial cell division membrane protein 6 3 Op 4 28/0.000 - CDS 6264 - 7847 1145 ## COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase 7 3 Op 5 28/0.000 - CDS 7844 - 8971 956 ## COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase 8 3 Op 6 26/0.000 - CDS 8968 - 10482 1194 ## COG0770 UDP-N-acetylmuramyl pentapeptide synthase 9 3 Op 7 26/0.000 - CDS 10479 - 12236 1322 ## COG0769 UDP-N-acetylmuramyl tripeptide synthase 10 3 Op 8 . - CDS 12275 - 13921 1372 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 11 4 Op 1 . - CDS 14098 - 14691 451 ## Mlut_13670 hypothetical protein 12 4 Op 2 29/0.000 - CDS 14688 - 15737 768 ## COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis 13 4 Op 3 . - CDS 15826 - 16095 188 ## COG2001 Uncharacterized protein conserved in bacteria - Term 16507 - 16545 12.3 14 5 Op 1 . - CDS 16584 - 16970 249 ## Mlut_13700 hypothetical protein 15 5 Op 2 . - CDS 17104 - 18399 880 ## COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair 16 6 Tu 1 . + CDS 18456 - 19571 967 ## COG0142 Geranylgeranyl pyrophosphate synthase 17 7 Tu 1 . - CDS 19616 - 20110 374 ## Mlut_13730 hypothetical protein + Prom 20058 - 20117 2.3 18 8 Op 1 . + CDS 20211 - 21398 870 ## COG1388 FOG: LysM repeat 19 8 Op 2 . + CDS 21454 - 23391 1305 ## COG0515 Serine/threonine protein kinase 20 9 Op 1 . - CDS 23416 - 24828 1340 ## COG3200 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase 21 9 Op 2 . - CDS 24900 - 25607 518 ## COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase 22 10 Tu 1 . + CDS 25676 - 26446 526 ## COG1647 Esterase/lipase 23 11 Tu 1 . + CDS 26562 - 28397 1497 ## COG1022 Long-chain acyl-CoA synthetases (AMP-forming) - Term 28331 - 28382 4.3 24 12 Op 1 1/0.200 - CDS 28460 - 29923 380 ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 25 12 Op 2 . - CDS 30006 - 33524 2993 ## COG1038 Pyruvate carboxylase - Term 33586 - 33628 0.4 26 13 Op 1 4/0.000 - CDS 33683 - 34246 314 ## COG0789 Predicted transcriptional regulators 27 13 Op 2 . - CDS 34458 - 34973 394 ## COG1259 Uncharacterized conserved protein 28 14 Tu 1 . + CDS 35008 - 36798 733 ## 29 15 Tu 1 . - CDS 36725 - 38281 1490 ## COG3104 Dipeptide/tripeptide permease 30 16 Tu 1 . + CDS 38322 - 38882 413 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins - Term 38890 - 38930 12.7 31 17 Op 1 . - CDS 39128 - 40129 773 ## nfa50060 hypothetical protein 32 17 Op 2 . - CDS 40152 - 40532 264 ## Caci_7308 hypothetical protein 33 18 Tu 1 . - CDS 40667 - 42076 380 ## PFREUD_11160 hypothetical protein 34 19 Tu 1 . - CDS 42433 - 42729 98 ## - TRNA 43053 - 43129 85.1 # Pro GGG 0 0 - Term 43254 - 43298 8.7 35 20 Tu 1 . - CDS 43508 - 43987 400 ## Mlut_14030 hypothetical protein 36 21 Tu 1 . - CDS 44092 - 44568 416 ## COG1160 Predicted GTPases Predicted protein(s) >gi|289558287|gb|ADCD01000023.1| GENE 1 1 - 1138 978 379 aa, chain - ## HITS:1 COG:MT2209 KEGG:ns NR:ns ## COG: MT2209 COG0206 # Protein_GI_number: 15841642 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division GTPase # Organism: Mycobacterium tuberculosis CDC1551 # 1 287 49 335 401 389 80.0 1e-108 MIEVGLRGVEFIAINTDAQALLMSDADVKLDVGRELTRGLGAGANPEVGRQAAEDHAEEI EEVLRGADMVFVTAGEGGGTGTGGAPVVARIARSLGALTIGVVTRPFTFEGRRRAGSAEA GIDALRDEVDTLIVIPNDRLLSISDRNVSVMDAFRQADQVLLSGVQGITDLITTPGLINL DFADVKSVMQGAGSALMGIGHAQGEDRAVKAAELAIASPLLEASIDGAYGVLLSIQGGSD LGLFEINEAARLVQEVAHPEANIIFGAVIDDALGDEVRVTVIAAGFDKVDVTSAPAAPQA VQQQAAPQRAAAPAQPQPVPAQPQPAPAQPQQAERPAVRGTVPLAPQEQQPRRQQDLPTV VEPDLGAGSSDLDVPDFLK >gi|289558287|gb|ADCD01000023.1| GENE 2 1534 - 2262 416 242 aa, chain - ## HITS:1 COG:no KEGG:Mlut_13580 NR:ns ## KEGG: Mlut_13580 # Name: not_defined # Def: cell division septal protein # Organism: M.luteus # Pathway: not_defined # 31 242 13 224 224 338 97.0 1e-91 MVRFPGRTARRRRATRWGVAAAVLAVLTVLGWVVFFSPVLAVDRVEVTGTRHVSATDVQE RLEPVYGVPLSRVGAGRVGELVGGLPGVAEVQTVPRLPTGLEVAVREHEARARRDGDDGV QLLLADGTVLTGVPEERLEGEDLPAFSEELPQRAQEERAGVAEVLAALPESVADRVETAD SRGPGQVRLALEGGVTLVWGDAQDAGLKGSVAEAFLADERHGSAEGGVAEIDVSVPTRPI TR >gi|289558287|gb|ADCD01000023.1| GENE 3 2316 - 3803 1228 495 aa, chain - ## HITS:1 COG:Cgl2107 KEGG:ns NR:ns ## COG: Cgl2107 COG0773 # Protein_GI_number: 19553357 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate-alanine ligase # Organism: Corynebacterium glutamicum # 17 484 13 483 486 312 46.0 9e-85 MSRDESTRPAAEGRFADLGRVHLLGIGGVGVSGVARILQEQGVAVSGSDAKDLPVMRELA AGGARITVGYDAAHLGRDVTTVIASSIAGPGNPEHDAAVARGLRVLHRSEGLALAMRGHR VLAVAGTHGKTTTSSMAAMAFSDAGWDPTFAVGAAVAGLGTNARAGRGEWFIAEADESDG TLVNYPSTIGIVTTVEADHLDHYGTEEAVHQVFRDFAGGLPAAAQGGVLVACLDDAGAAD LAAWARDHAAADVVTYGTATRDGVTPDLLVTDLAVEPGETGVGQRATFRMADGPERTLHL QVPGRHNALNAAAVVLAAVRAGMAFEAAVRGVEAFRGTARRFEFRGAARGVRVFDDYAHH PTEVAAAVSAGRAVAGDARVHVLFQPHLFSRTRDFAAEFAAALSGADAVRVLPVYAAREE PMPGVDSSLIASRLTTGAAEDRVVAEDRAEAVRSVAAGAETGDVVLTMGAGDVTALGPDL LAELGRDAAPGVAHP >gi|289558287|gb|ADCD01000023.1| GENE 4 3800 - 4930 1016 376 aa, chain - ## HITS:1 COG:Cgl2108 KEGG:ns NR:ns ## COG: Cgl2108 COG0707 # Protein_GI_number: 19553358 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase # Organism: Corynebacterium glutamicum # 10 366 7 354 363 243 42.0 3e-64 MTQTSHPSGPLRVVLAGGGTAGHISPMLAIARALEGDGGGPVECTMVGTASGMETRLVPE AGYELDLIDRVPMPRRPSMDVVRFPARMRAAVATAARILRDRRADVVVGVGGYVATPVYL AAFRAGVPVVVHEANARPGLANRIGALRAAHVGTALPDTRLRGARWVGMPMRPEISGLDR AAARRAAREALGLDPDRTTVVVTGGSSGALAVNRTVRAALGDLLAAGLQVFHLTGRDKAL TEDDGSLLVRDGYVQREYLAGMEQAYAAADLIVARSGAGTVCEVSAVGLPAVYVPLPIGN GEQALNARPVVEAEGALLVRDDAFGRAWVQRQLIPLATDPERLARMGEAAARFGVRDADV TMAGLVRSAAQEGARR >gi|289558287|gb|ADCD01000023.1| GENE 5 4927 - 6219 1158 430 aa, chain - ## HITS:1 COG:MT2213 KEGG:ns NR:ns ## COG: MT2213 COG0772 # Protein_GI_number: 15841646 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Mycobacterium tuberculosis CDC1551 # 41 397 56 412 524 224 39.0 2e-58 MSPIELRPVRPRADDDAPERRERLLRRMWRVLEGRRALDLSVLLISGCTALLTVLGLVMV LSSSSVEAIGTGGGSYALFLRQSAWAVAGVAALLVFSRLPVRVLKAMAWPAFGVAVILLA LVAFSPLGVTVGGNRNWLGIGGFRMQPSEAAKLALALWAAAVLERKHRLVTQVRHALIPV LPGGLLLLGLVMAGSDLGTAIILAIVLATVLYVAGTHWGVFLTFLALSVLGILALTLLAP HRMVRVQAWMGDCSDATDPCFQPAHGMYALASGGWWGAGLGQSRQKWSYIPEAENDFIFT ILGEELGLVGTLVVLLAYLGLAIGIYRVAAGTTSTFIRLSTWGILAWLVGQAAVNIAMVS GIIPVVGVPLPFISYGGSALTLSLSAVGIVLAFARHERRRAVQPDARPQADEPDTDPLPV IPTPALQEPR >gi|289558287|gb|ADCD01000023.1| GENE 6 6264 - 7847 1145 527 aa, chain - ## HITS:1 COG:Cgl2110 KEGG:ns NR:ns ## COG: Cgl2110 COG0771 # Protein_GI_number: 19553360 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramoylalanine-D-glutamate ligase # Organism: Corynebacterium glutamicum # 34 515 14 472 472 273 41.0 8e-73 MTGPAHAPVRRPRADTARTADLTCWDAPGWAGLRVVVTGLGVTGFSVADTLAELGAAVVV VDGDDGPENRARAETLRIVGVREVLLDRAATQALPEVDGAAADLVVTSPGWRPDQPLLMA AHAAGLPIWSDVELAWRLRERAGRKTADWVCLTGTNGKTTTVTMVEAILRADGRRAVACG NVGTPVLDAIRDPEGFDVLALELSSFQLHWTHGLAPASSAVLNLAEDHVDWHGSMEEYAA AKGKVYANTRVACVFNEQDPVTRTLVERADVQEGCRAIGFTTDTPGLSDIGVVDGILVDR AFLDNRRHEAIALAERADLGPVAPRHTVANAAAAAALTRAVGVSPAAVAEGLRSYDRGEH RIQLVATSRDIMWVNDSKATNPHAADASLAAFSSVVWLAGGLPKGVTYHELVAAHAHRLR AVVLLGRDTSALRAALAAHAPEVPVHAPLAAADGTGPADGAAVMAEAVRVADGLARPGDT VLMAPAAASMDQFRSYAARGDAFIEAVAGLMREHGWDVPDDAAPGAD >gi|289558287|gb|ADCD01000023.1| GENE 7 7844 - 8971 956 375 aa, chain - ## HITS:1 COG:Cgl2111 KEGG:ns NR:ns ## COG: Cgl2111 COG0472 # Protein_GI_number: 19553361 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase # Organism: Corynebacterium glutamicum # 1 364 1 361 366 314 49.0 2e-85 MIGLLIGGVLGLVLSAAGTPLFIRFLVKRGYGQFVRDDGPTTHKTKRGTPTMGGAVIIGS LVLAYLITHGLLAVLGVDFGGPTASGLILLLLTVGMAFVGFVDDFTKITKQRSLGLTPRG KIILQALIGTAFAVLALNFPDERGLTPASTAISFARDVPWLDLAFAGPAIGVILFVIWSN LITTATTNAVNLTDGLDGLATGATAMITGAYVLMSLFQSSQSCALEGTRGCYEVRDPMDL ALLAAILTSSLLGFLWWNTSPAKIFMGDTGSLGLGGALAGFAIFTRTEILVAVLAGLMVA ITLSVIIQVGWFKVSGGKRVFLMAPLQHHFELKGWAEVTVVVRFWLLSLMCVTVGLAIFY GDWLIRQGGLAGVTP >gi|289558287|gb|ADCD01000023.1| GENE 8 8968 - 10482 1194 504 aa, chain - ## HITS:1 COG:Cgl2112 KEGG:ns NR:ns ## COG: Cgl2112 COG0770 # Protein_GI_number: 19553362 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide synthase # Organism: Corynebacterium glutamicum # 1 486 1 489 514 246 40.0 1e-64 MIALTAAQIAEAVSGTLSATLDPATVLVHATPDSREVTAEGTLYVAKPGERADGHDFIDA ALGAGAAAVLAERATHAPDGAAHPAIIVEDAVLAMGALAREIVRRVREHSPTTVIGITGS AGKTTTKDLLAALLATQGPTVAPVGSYNGEVGVPLTVFRAELDTRSLVVEMGADHVGNIA YLCDIVRPDIGVVLMVGTAHAGSFGGVANIARTKGELVEALGPDGVAVLNLDDERVAGMA ARTAAPITWFTADERGVARAAEDVAAGRASGLVAARDVRADDQERPLFDLQVGTDEAAVR HPVASGLTGLHHVHNVLAAAAAAHAAGMDPAEIARGLDGLGPASRFRMERTDRADGVTII NDAYNANPESMRAALRTLATLGRSSGRRTWAVLGEMLELGDARVREHTLVGESVVRLNIA QLLVVGAGARPLYIGALNEGSWGEEAHFVDDAAQAEAFLTEHLRPGDLVLVKSSNGVGLA ALGERLATADAVAAPSASPKESRP >gi|289558287|gb|ADCD01000023.1| GENE 9 10479 - 12236 1322 585 aa, chain - ## HITS:1 COG:ML0909 KEGG:ns NR:ns ## COG: ML0909 COG0769 # Protein_GI_number: 15827429 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl tripeptide synthase # Organism: Mycobacterium leprae # 20 562 11 514 530 243 40.0 9e-64 MTTPSDPPAALTPAEQDAAFRPSDTPATPWPVLAQALAEAGIAAHVHGAAPADGVTGVSL DSRVVRPGDLYVAVPGAHAHGAAFAATALEAGAVGVLTDAAGRALLAGQGLADAPVLEVD AVRTAAGTVAARVYGGGRDAGPRLVGVTGTNGKTTTSFLAAALLEALGRRSGIVGTILIR AGEREVPSTLTTPEATQLHALMALMREEEVDTAVMEVSSHAVAYQRIAGLRYAVAGFTNL TQDHLDMHGSMQEYFAAKAGLFDPARTDHAVITLDGGEGPRWGVAMARAAGAPVTTLALG PAAPTPGALAEHDPGLRADWEVAELAPDGLGHRFTLRHAATGRELRASVGLPGRFNVANA ALAVLLVLHAVGEEHLDALAAVLDVPAGEGPLAAAVPGRMEVVGREPDAVVDFAHNPDGM VQALRSLADARAAAGMRGRTLIVFGSAGDRDRDKRPVMGAIAARAADVVIVTDDTPHSED PAPIRAHILAGARAEADRIAREEGRPVVIEEVADRAAAIRRAVELAGPQDGILLAGRGHE TTMDYDGELVPLDDRVALREALAAGAAVVSASGSGPAREGKVIES >gi|289558287|gb|ADCD01000023.1| GENE 10 12275 - 13921 1372 548 aa, chain - ## HITS:1 COG:Cgl2114 KEGG:ns NR:ns ## COG: Cgl2114 COG0768 # Protein_GI_number: 19553364 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Corynebacterium glutamicum # 50 531 134 642 651 245 33.0 2e-64 MDQRLTHQETLPQRGSILDRDGDVLAASARRYDIVVDQRLVKDFNEWDREARETVLVDVD SRLASLAEVLGMSEEEVREATIGSRPYAVVRRSVTPEVRDKAMALNVPGLLSEAVDRRTY PNGSVAGSIIGFMGGDGTALEGLELSQDDVMTGTPGTRTFEVGADGIRIPNAPLEEVPAV DGADLRLTVDKDAQWFAQETLGALAAEYDAEWANAVVMDVKTGDVIVMADSTTVDPADPD ATEGNFRTSTVMSTPYEPGSTGKALPIAAAVDAGKVTATDGFTVPGSQDFDGQTIRDFSP HPTFDMTVAGIYARSYNTGTVQIAEKITDEQRYEYMRSFGVGQPIDLGLPQQAGSVLVPP EQWDGRQRLTTAFGQGYTQTTLHTAQMYQALANGGMLIPARLIDATVDGDGAEKRWESSA EPHRVVSEETAAQMLRMMETVVTQGTSKAAAIPGYRVGGKSSTAEAASDTGKYDGYNFGF TAVAPLDDPRFVVSVSMHRPPSKQGSRDVSVAAATIMEYMLRQADVPATGAEPNDYRVFV DDPQDRPW >gi|289558287|gb|ADCD01000023.1| GENE 11 14098 - 14691 451 197 aa, chain - ## HITS:1 COG:no KEGG:Mlut_13670 NR:ns ## KEGG: Mlut_13670 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 183 1 183 197 230 94.0 2e-59 MTLHEEMSMAAHARIAESLRPGSTPVAPARPAPQERTPLSVVPAPLPRSRSGVTVLCVLV VLAALAAVLVMNITMSNRQYALLDLRQEQQAVTETNERLAEQVGHLEAPQNLAARADALG MVAPAGTASVDAGTGQFSGEAQAAQDGDISATYVAPPADADAVRQGASDDGQDEIEGPRT FSGADASAAADQDAADR >gi|289558287|gb|ADCD01000023.1| GENE 12 14688 - 15737 768 349 aa, chain - ## HITS:1 COG:Cgl2116 KEGG:ns NR:ns ## COG: Cgl2116 COG0275 # Protein_GI_number: 19553366 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis # Organism: Corynebacterium glutamicum # 30 342 12 329 337 263 47.0 3e-70 MGIPPEVRQDRDVSRRSRVDAGQPRPEDRHLPVMRDRVVDLLAPAVQAALEAGRTPVAVD GTLGMGGHTEALLTRFPHLRVIGIDRDVHAQAMAAERLGPLADRLIPFHGTYDRVPEAMA AAGVTKVDAALYDLGVSSYQLDDRERGFAYSYDAPLDMRMDDTAERSAATLVAELDEQEL RRIIRRDGEERFAGPIARAIVRARDEAPIETTGRLVEVIRSAVPVAAGATGGHPAKRTFQ ALRIAVNEELDILDAAVPAILDALHVGGRLVVMSYHSLEDRITKRHLSAWATSTAPPGFP VVLEEHEPVVRVLTRGTEKPTEEEISENRRASSAKVRAVEKIRTSRTTA >gi|289558287|gb|ADCD01000023.1| GENE 13 15826 - 16095 188 89 aa, chain - ## HITS:1 COG:BH2576 KEGG:ns NR:ns ## COG: BH2576 COG2001 # Protein_GI_number: 15615139 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 1 85 55 139 143 85 43.0 2e-17 MRSAPLSSRQARDYIRVFLSGASDEVPDKQGRVTVPAPLRQYAGLDRDVTVIGAGTRVEI WDSESWNTYLAEQEAAFSETDEDVLPGVF >gi|289558287|gb|ADCD01000023.1| GENE 14 16584 - 16970 249 128 aa, chain - ## HITS:1 COG:no KEGG:Mlut_13700 NR:ns ## KEGG: Mlut_13700 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 128 1 128 128 173 98.0 2e-42 MPLSEHEQRMLDQLEQQLRTEDPRLATQMADTGRHRLPVGRVVAGAVLAVVGLLVVVLGV ANHAILLGVLGVVVIGAGIFLLTTRPRAVASGASGPVARRSGAPRRQGGGDFMGRLERRW DERRARGD >gi|289558287|gb|ADCD01000023.1| GENE 15 17104 - 18399 880 431 aa, chain - ## HITS:1 COG:mlr1877 KEGG:ns NR:ns ## COG: mlr1877 COG0389 # Protein_GI_number: 13471787 # Func_class: L Replication, recombination and repair # Function: Nucleotidyltransferase/DNA polymerase involved in DNA repair # Organism: Mesorhizobium loti # 13 401 5 390 415 222 41.0 1e-57 MSETAPAAPRDEATILHVDMDAFFLSVELRERPDLEGRPAAVAAPSGRSVVLSASYAARA YGVRSAMPLAHARALCPPLVVIPPRQQLYRAVSAEVMAVLADVTPVMEQLSVDEAFLDVA GARRRLGPPEHIGHLIRERVRSELGLPCTVGGSAVKFVAKTASTAAKPDGLLIVPPERTL DFLHPLPVGWLWGVGPKAAERLGRRGVATIGDLARVDPARLEASFGAAGREWASLARGID PRPVAPRPAARSIGADHTFDVDPVDVAGVDPEVLRLCHRVAARLRAEQVTAGAVTVRLKA PDGSVRSRTARLARPTATGHDLLGPARRLVRELHAERPHPVRLVGVRAERLGDAADQPPA QEALFGGSAWGTEDEASQEGDWAGAEAALDAVARRFPTAAVRPASLLGRREARADARRDA PRPGIKGPDRE >gi|289558287|gb|ADCD01000023.1| GENE 16 18456 - 19571 967 371 aa, chain + ## HITS:1 COG:Cgl2124 KEGG:ns NR:ns ## COG: Cgl2124 COG0142 # Protein_GI_number: 19553374 # Func_class: H Coenzyme transport and metabolism # Function: Geranylgeranyl pyrophosphate synthase # Organism: Corynebacterium glutamicum # 14 370 10 365 366 191 39.0 2e-48 MPADVAVPRPRPADQDRFRAAVADALDRLLAEHRDLARDVHPLTAPLVDAIADLTAGGKR LRAVLAWLGWRAAGGEAEDPRIAEAGAAFELFQAAALIHDDILDRSDTRRGMPSVHRRFE SLHREAGWRHAAEHFGVSAAILAGDVALGMSETAFARVLAGTPREDRARAELERMRFGVM AGQYLDVVAEMAPAARDAREAEAAAEAVVEHKSARYSAVHPLALGGLLAGADDGLVTAFA RVSLPFGMAFQYRDDLLGVFGDPATTGKPAGDDLREGKQTVLIARAVELLAPDEAAALDA DLGDPDLGADRVAHWQGVLEACGARRAVEERVAALSHEAAGAVAGLLAHGVPEDVSAELT RLIDAYTSRRH >gi|289558287|gb|ADCD01000023.1| GENE 17 19616 - 20110 374 164 aa, chain - ## HITS:1 COG:no KEGG:Mlut_13730 NR:ns ## KEGG: Mlut_13730 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 33 164 1 132 132 222 97.0 3e-57 MLSECDLRDHTEIHAVRGAVGRARRQPRRLAPVSTTSSDTPVPADAIPAELDALVGEWLA VPDVAERLDQRVTRVHNLVHDRRLLAVRRPEPAVRSVPALFLTETGVLDSLQGTLVLLAD AGFSDEEALRWLFTEDESLPGRPIDALRDGRKTEIRRRAQALAW >gi|289558287|gb|ADCD01000023.1| GENE 18 20211 - 21398 870 395 aa, chain + ## HITS:1 COG:lin2838_2 KEGG:ns NR:ns ## COG: lin2838_2 COG1388 # Protein_GI_number: 16801898 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: FOG: LysM repeat # Organism: Listeria innocua # 39 221 65 253 254 75 29.0 1e-13 MPRSAVSHTPVRSRRLRSVLTGGAVPLLLLTGLPAQAHAQEAAVHTVRPGDTLTRISAAR GVSVADLLRFNGLGLETVLHPGDELRLTGAAAPAPAAGTYTVQPNDGWWVIARRTGVSAA QLQRLNGMSASSMLHPGMVLTTQRTAAAPKTPASTAPTPTPAPAPASKAPAAAGETVRYT VVSGDSLWGISQRFEVSIPRLRELNGLTRASTLHPGDVLVISDGTLEVEPVSAVQAGGDT FLGRTYAPHVTASANENLRLLRSVPQPTPEQMQQIVRETAERMGVDPRLALGHAYTESRF RMASVSPGNAVGAMQVIPITGEFASELVGRELNLLDPHDNAVAGVAFIKYVQDRTPTLDE GIGAYYQGLGGVLDSGLNPEARDYVAKVRAAMAMF >gi|289558287|gb|ADCD01000023.1| GENE 19 21454 - 23391 1305 645 aa, chain + ## HITS:1 COG:Cgl2127_1 KEGG:ns NR:ns ## COG: Cgl2127_1 COG0515 # Protein_GI_number: 19553377 # Func_class: R General function prediction only; T Signal transduction mechanisms; K Transcription; L Replication, recombination and repair # Function: Serine/threonine protein kinase # Organism: Corynebacterium glutamicum # 10 285 6 276 418 219 46.0 1e-56 MSSARRDPLVGGIVDGRYRVVERLARGGMSTVYLAVDERLDRQVALKVMHPHLAEDPVLV GRFEQEAKTAARLSHPHVVAVLDQGHTEAEDGDVLAYLVMEHVPGRTLRTVIRDRAPLSP REALRFLRPLVDGLAAAHRAGLVHRDVKPENVLVRDDGRVTVADFGLSRAATAHTMAGQA VVGTPAYLAPEHIAGAPADSRSDVYAVGIILFELLTGRQPYTAATALQVAYRHVHERVPV PSTLHPGLPEDLDDLVLWCTEPDPADRPAGAGELLHRIDAVAAGLDPDEPDRRPAEGPGA EPAAAAPAAEGLEDAAPDGNLQTRALDAGDHHATRVLPALAESALDEDTTDVIDTRAATH GGDRRPDARPAEPIGPLAVDPDPADRHPGRGSRRRLRRAARRPALDLGQGTGRAAAIGAA VTLLLTGVALLLGWTLGSGGLGVGGVAVVPDLDGLAREAAEERLTAAGFTAAVTARHDEL RTEGTVVASSPAAGEPAGRGTPVELTVSAGPAPVPVPDLTGVVIRQAHGVARDARFTVEV AERRTDPAVPAGAVIEQHPAPGEQATPGTAVRVVLSEGRAVRPVPDVTGQDPETARTTLA DDGWDARVHRLPLPLSARSESRVLHQSPAAGTALPEGTAVHVWVG >gi|289558287|gb|ADCD01000023.1| GENE 20 23416 - 24828 1340 470 aa, chain - ## HITS:1 COG:Cgl2130 KEGG:ns NR:ns ## COG: Cgl2130 COG3200 # Protein_GI_number: 19553380 # Func_class: E Amino acid transport and metabolism # Function: 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase # Organism: Corynebacterium glutamicum # 36 460 40 464 466 481 56.0 1e-135 MTEDPREKILAFGTAISEGAADIPGLDHWRSLPIAQAPSWADEADHRAAVAELSALPPLV FAGEVDLLRARLADVAQGRAFLLQGGDCAETFAGSTANRISARVKTILQMAAVLTYGASM PVVKMGRIAGQFAKPRSSDTETRDGVTLPSFRGEIVNGYEFTEQARRHDARRMVQAYHTS ASTLNLVRAFTQGGFADLRSVHQWNQGFMANPAYAQYEEMAAEIDRAVRFMNAAGVDFEA MRRTEFYSAHEALLLDYERALTRVDSRSGDPYATSAHFLWIGERTRQVDGAHVDFLSRVR NPIGVKLGPTTTTADALELAERLDPEREPGRLTFITRMGAERIRDVLPGIVEGVRDAGLE PVWVTDPMHGNTVTAANGYKTRRFEDVMDEVSGFFEVHRELGTHPGGMHVELTGDDVAEC LGGSDPINEADFDARYETLCDPRLNHQQSLEMAFKVTEALSHPERRAPRA >gi|289558287|gb|ADCD01000023.1| GENE 21 24900 - 25607 518 235 aa, chain - ## HITS:1 COG:ML0892 KEGG:ns NR:ns ## COG: ML0892 COG0204 # Protein_GI_number: 15827414 # Func_class: I Lipid transport and metabolism # Function: 1-acyl-sn-glycerol-3-phosphate acyltransferase # Organism: Mycobacterium leprae # 4 224 2 222 244 223 50.0 2e-58 MSTFYWSAKTFAVAPATRLLFRPWVKGLGNVPAEGPAILASNHLSVSDSVFMPAMLDRQV HFLAKHEYFTGPGVKGWVTRRFFEAANQLPMDRSGGEASLRSLDAGLEALREGRLLGIYP EGTRSPDGRLHRGKIGVAKLALASGAPVVPIAMIGTDRVQPIGHVLPRIRRLGMIFGEPL DFSDRAEAAGDPRVLREVTDEIMEAIRRLSGQEYVDTYAADVKAGRVAAPPRARD >gi|289558287|gb|ADCD01000023.1| GENE 22 25676 - 26446 526 256 aa, chain + ## HITS:1 COG:TM1022 KEGG:ns NR:ns ## COG: TM1022 COG1647 # Protein_GI_number: 15643780 # Func_class: R General function prediction only # Function: Esterase/lipase # Organism: Thermotoga maritima # 28 238 24 238 253 75 27.0 8e-14 MPRPVAVAPEDLPLRLMPAAPARRDHCVVLLHGFTSTPASVRAWAEGLAAGGSPVSVPLL PGHGTRWEDLAATGADEIRAAVRAVVDLELARHGRVVMAGISMGGALALDAAAHRPVAGV LVVNPALRFASPLAPFAPLLAPFVPTIAPIADDIADPTARERAYPRTPMAGVAALGRIQR AARRALPRITAPVTVYRSARDAVVPASSHRTLVRGLRHAPVEVVGLPRSRHVATLDYDLP LLIDHGRSAVAAMTTH >gi|289558287|gb|ADCD01000023.1| GENE 23 26562 - 28397 1497 611 aa, chain + ## HITS:1 COG:Cgl2244 KEGG:ns NR:ns ## COG: Cgl2244 COG1022 # Protein_GI_number: 19553494 # Func_class: I Lipid transport and metabolism # Function: Long-chain acyl-CoA synthetases (AMP-forming) # Organism: Corynebacterium glutamicum # 1 604 7 613 615 468 43.0 1e-131 MHEISEPYQPRLSPEANITDFLERQATERPDHGLFAVADAQDQWTDVSARDARERVRALA KGLIAAGIQPGETVGLLASTRLEWTLVDFAIWYAGAVTVPVYETSSVSQVSWIIEDSAVR AVVTGNEDLAKTVRDAVQREGLPELIGLWTMDPADGAPGSGLEALVALGADVTDEELETR RSSAGLADLATIIYTSGTTGRPKGCELTHENFAELVNQTLSSSLGDVIRQDTSTVLFIPL AHVFARFVSVLTVAAGARCGHVSDIKRLSVSLQTFQPSFVLAVPRVFEKIYNAALLNAQS GGKEKIFRRGADVAIRWSRALDSGQMTAPLRLQRAFYSALIYRRIRTAMGGRLAYAVSGG GPLSPDLAHFFRGVGVTILEGYGLTETTAPITVGRPDRLKIGTVGHPLGGNQVRIAEDGE ILTRGTSLMRGYHNRPEANEEAFEDGWFRTGDLGALDDDGFLTITGRKKELLVTAGGKNV APAMLEDAIRSDALVSQVMVVGDGKPFIAAIVTLDTDTLPAWLAANGLPKDLDVAAAARE DAVRRHIQEAVDKANSLVSRAEGIREFRILDRDFSLEEGHVTPSLKMRRSAIMKDFAAQI ADIYGEPAPQN >gi|289558287|gb|ADCD01000023.1| GENE 24 28460 - 29923 380 487 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 8 476 4 448 458 150 28 1e-35 MATSAEHHDLLIIGSGSGNSLISEHWKGRSVVIADSGTFGGTCLNVGCIPTKMYAYPAGL AALPPEARSLGVGLEFTGADFPAIRDRIFTRIDGISRDGLRYRRDDLDYTSVIQEEVRFV GPRRVRTASGREITADQVVVAAGSRPTLPAIPGLNLPSVHTSDTVMRLDRLPRRLLVVGG GFIACEFASVFAGLGTEVVQVNRGHRLLKQHDMSVSTTFTKIAARRWDLRTGWTPAGIEP VEDAERAADGWVRVRLDRAEGQEQTGIVEEAIEADAVLIAVGRTPNTDRLDPAAAGLDVT DDGVLASDEHQRALSDGAPVEGVYVLGDVANTWQLKHVANHEARVVAHNLEHPDDLRANT LGPVPAAVFTHPQAASVGLTVEQALADYGADAITVKTQSFGDVAYGWAMEDTEGVCTVVA EKATGRILGGHILGHEAANLIQPLVTGMAFGIDAHRLARGQYWPHPALTEVVENALLGLD VPDSGLL >gi|289558287|gb|ADCD01000023.1| GENE 25 30006 - 33524 2993 1172 aa, chain - ## HITS:1 COG:MT3045 KEGG:ns NR:ns ## COG: MT3045 COG1038 # Protein_GI_number: 15842520 # Func_class: C Energy production and conversion # Function: Pyruvate carboxylase # Organism: Mycobacterium tuberculosis CDC1551 # 23 1171 1 1126 1127 1375 67.0 0 MTAPVENFTPPEDAAGSTGAGAVFSKVLVANRGEIAVRAFRACYELGARTVAVFPYEDRN SIHRQKADEAYRIGDEGHPVRAYLDVDEIIRVAKDAGADAIYPGYGFLSENAGLARAAAE NGITFVGPPADVLELTGNKVEALRAAKRAGIPTLASSDPSADVEWLLEQAEEIGFPIFVK AVAGGGGRGMRRVERREDLRGSLEAAMREADTAFGDPTVFLEQAVLRPRHIEVQILADGE GNVVHLFERDCSLQRRHQKVIEMAPAPNLDEEIRQALHRDAVAFAKEMGYVNAGTVEFLV DTAGERAGQHVFIEMNPRIQVEHTVTEEVTDVDLVGAQLRIAAGATLPELGITQDALQVR GFAIQCRITTEDPANGFRPDTGTITAYRSAGGSGVRLDGGTIYAGAEISPHFDSMLVKLT CRGRDYATAVRRVRRALAEFRVRGVATNIPFLMNVMDDPQFVSGDVATDFIDKHPELATV NRSQDRGSKALQYLVDVTVNQPHGPRIEGIDPRDRLPEHPGDKHQEPDRSPFDGPSRNED AAPPHGWRQVLLEQGPEGFARTLREQTALAVTDTTFRDAHQSLLATRVRTRDLLAAAPAV AHTLPGLLSVEAWGGATYDVALRFLHEDPWQRLELLRAELPNIPIQMLLRGRNTVGYTPY PTEVTDAFVAEAAASGVDVFRIFDALNDVEQITPAIEAVRATGTAVAEAALCYTGNMTDP KETLYTLDYYLGLARRMVDAGAHVLAIKDMAGLLRPAAARELVTALRAEFDLPVHLHTHD TAGGQLATLLAAAEAGVDAVDAATASMAGTTSQVPLSALVAALEHTERDTGLGLEAATAM EPYWESVRSAYAPFEAGLPAPTGRVYHHEIPGGQLSNLRTQAIALGLGERFEAIESMYAA ADDLLGHLVKVTPSSKVVGDLALQLVGSGVDPKEFAERPQEFDIPDSVIGFLRGELGDPP GGWPEPFRTKALQGRREGAGMVEISAEDSSALAEAGQTRRAVLNRLLFPGPTKEFEAHRE EFGDTVTLHTRDFLYGLVPGREHVISLGRGVRLLATLMSVSEPDEKGMRTVMVTLNGQLR QMTVRDRSIESTVRTAEKADPGTPGHVAAPFAGSVTVQVAEGDAVEVGQAVATIEAMKME AAITAQAAGTVRRVVTEGVTPVNGGDLLLVIE >gi|289558287|gb|ADCD01000023.1| GENE 26 33683 - 34246 314 187 aa, chain - ## HITS:1 COG:MT1879 KEGG:ns NR:ns ## COG: MT1879 COG0789 # Protein_GI_number: 15841300 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Mycobacterium tuberculosis CDC1551 # 2 184 31 220 225 207 62.0 7e-54 MTPTAGPGRPPALGTQGTLFDEGATRGDDVGFRGPTACKAAGITYRQLDYWARTDLVVPT VRSATGSGSQRLYSFRDILVLKVVKRLLDTGVSLQQIRAAVGHLRERGVEDLAQITLMSD GASVYECTSADEVVDLVQGGQGVFGIAVGRVWREVEGSLAELPRESVVGAPEPGDELAGR RRARRSA >gi|289558287|gb|ADCD01000023.1| GENE 27 34458 - 34973 394 171 aa, chain - ## HITS:1 COG:ML2074 KEGG:ns NR:ns ## COG: ML2074 COG1259 # Protein_GI_number: 15828120 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Mycobacterium leprae # 19 170 6 161 164 108 41.0 6e-24 MTEPRPVPADDVGDVPLSVLGVRVELPEQHHVILLVDPPGRTMVPLWVGAPEAAAAALAL EGVRAPRPLTHELLLAAVDALGAEVVRVRLTEVRDEVVHAELVLSTGARVDARASDAVVV ALRADAPVLGSPAVLADAGMPARTGEEDAGQERAVEDFRDFLDTVRPEDFA >gi|289558287|gb|ADCD01000023.1| GENE 28 35008 - 36798 733 596 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MQPQAGLRDLACRAGHAGAGAGVAAGLQRGDGALHQAQLAVGGGPQRAQMPRLQAVAREH DGGPGHVHRVARVAAVGIDGQERVLVQLGQQLLARTGFGGELGAGPRPAAPGDLAAEPLR VRGRRDRRGSGQAGGALTAVQRGQVFGDHLERQEVVALQGEDEPEPVHVLRPEAPVAGGG PLGQDEAAVLQEAHLGRGDAGEFGFEGGHDLADAQPARRAGGGDGVGARARIGHGDGGSA PRRSGVVREAVLADLHVHPGAQQDLVHAVVVHKGAVEGVQVHQPMAAVLGPELRVTAGDG DVVEEDVRVRVAPHGDHVLVQQEAGGLVRALVGEQQRGTGREGADRIRLLSGEVRRDQRR QLGEVDGGGGQVRFTSGLVHGVLLCEGRRRGAGRMEGRRGRRRPAGQRRGDGRRGSAGVR GVALGVHEALELGLVREGDLEQPAALVGGGVDQAGFAVELVVDGGHGAGDRGVDVRDGLR GLDLAHRGARGDLGADLRQVHVHDVTQRILGEVGDAHADRAGGTGLGDPLVFGGVLQAFG DGAHGVRVLCVVGSDDVVSQTTERRVIRATGALRARRACRDAPAWRWPARAGPRPG >gi|289558287|gb|ADCD01000023.1| GENE 29 36725 - 38281 1490 518 aa, chain - ## HITS:1 COG:Cgl2994 KEGG:ns NR:ns ## COG: Cgl2994 COG3104 # Protein_GI_number: 19554244 # Func_class: E Amino acid transport and metabolism # Function: Dipeptide/tripeptide permease # Organism: Corynebacterium glutamicum # 44 505 28 495 508 377 49.0 1e-104 MEEDSRSVENPQNPLAGRVPDVEPPARVAASTATRPDDATPDWRGRPFLGQPGPLANLFS VELWERFSFYGMQAMLVYYMSWTAAEGGLGIDPAVATGIVGAYGGMVYVFCILGGWVADR LLGSERTMFVSAVGIMFGHIALALVPGVPGLTLGLVLVAVGSGGLKANATNLVGSLYSRE DPKRDAGFSIFYMGVNIGALFGPLLTGLARDTLGFHVGFGLAAAGMAIGLAQYALTRKNL PTDVHRVPDPLPRSQYGRWGLIGLGMVAVVVVLFLTGVVTLGNLSDAVVVLAAVAAIAIF AVLLTSTKVSEEERSRVKAFIPLFIGTSVFFALFQQQFTVIALYSEHRLDRNLFGWLMPM EWVNSINPIFIIVFAPVFAALWTKLGTRQPATPVKFGIGIVLIGIAFLLFIPVADVVAVP LLWLTLILFVCTMGELLVSPVGLSLATKVAPRSFPVMMVSLYNLSVALGTALAGSLAGSY SEQNEVGYFGMIGAVTLGVGLLVLAIAKPVRRGMRGVL >gi|289558287|gb|ADCD01000023.1| GENE 30 38322 - 38882 413 186 aa, chain + ## HITS:1 COG:AGc4069 KEGG:ns NR:ns ## COG: AGc4069 COG0503 # Protein_GI_number: 15889512 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 16 182 22 187 198 132 44.0 3e-31 MRGPGGVRPRVGAVSVTSEIARARSLIRVVPDHPSPGVAFQDITPLLADARALRACVEAL VAPFEGRFDLVAGLEARGFLLAGAAAALTGTGLVPLRKAGRLPAPAARADYTLEYGTASI EVSEDLRAGSRVLLLDDVLATGGTLAAGRRLIEARGAEVVGAACLLELTALGGRAVVPDT HVLFAA >gi|289558287|gb|ADCD01000023.1| GENE 31 39128 - 40129 773 333 aa, chain - ## HITS:1 COG:no KEGG:nfa50060 NR:ns ## KEGG: nfa50060 # Name: not_defined # Def: hypothetical protein # Organism: N.farcinica # Pathway: not_defined # 157 329 1 173 175 203 56.0 7e-51 MSAPYVSIKRLVDNSLAAMLAAVEVYNKPQMTYRDEVTVMLVVNAWELALKATLRQKNRS IFYPKKRGERYRSIAIDDALGRVTASKLWPADIDGPAVVANVKALTEYRDRAIHLYNAQG LGAVIYPFLQQNILNYRDFMVAKFKKDLADSMTWQLLPLGATAPADAVQFMKVDKNATMV AEVEDFITELRHLMDDAQAAGGDMGRVATVYDIHMQSQKKMSSADLVVAVSPTADGQIAI RKTDPNQTHPFSATKLLEKVNEKRTGRKLTSRDHQALCWQDQLRENPKYAWKHTIGASHS WSGETVSYMVSLTDEQYDNARRGYSASLRRAAK >gi|289558287|gb|ADCD01000023.1| GENE 32 40152 - 40532 264 126 aa, chain - ## HITS:1 COG:no KEGG:Caci_7308 NR:ns ## KEGG: Caci_7308 # Name: not_defined # Def: hypothetical protein # Organism: C.acidiphila # Pathway: not_defined # 1 115 46 166 288 68 41.0 7e-11 MFKIGSLQHGTGVYQYSDADYLVSLKGIQPSSPLTMLTKVKEALQARFTSTTITIGQPAV DCHFSDGIVEVVPGYIASGGGDLIVDPRGGWMKSFPEEHNKYVNEINAKHSGGSSSGRVS RASHCS >gi|289558287|gb|ADCD01000023.1| GENE 33 40667 - 42076 380 469 aa, chain - ## HITS:1 COG:no KEGG:PFREUD_11160 NR:ns ## KEGG: PFREUD_11160 # Name: not_defined # Def: hypothetical protein # Organism: P.freudenreichii # Pathway: not_defined # 2 464 9 499 499 410 47.0 1e-113 MAELDITRAPRGVLAAQALVASVAERGDLAERHYLELKSTLDLSTKKDKEKIAKFILGAA NRMPDVAATAFEGYGVMIIGVAQGAITGIPAVEMMEISKVIQKFVGAGGPRWDIVWVPVE GSTNQVLVIIVDPPKLGQTPFPCRASGDSLTDGRIYIRADGETREANSEELDLLIRRGSA GAQVEVDFAVEVLGEVTFVAVDKESSVDEYVSTMRARLIDAMPSPEPQSTDAGSLRAGLA GLSAYRAALGGLPPVASFLMEPEQRSEEEYLKSIDHWESRFREAWTAALPKIEASQLRPA IVRITNRTPTFFHDVEVKLHLEGDVFAHDYSKPEWAVDFSDLELPHPPREWGPTQRSLSI PNYANMNQLYTPGATQYIPPSISYKNGGSVDLSSNVGELRPRGTYESEDEEIVLVVADRS LVSIRGTWELTARDHNEVFTGEIDVPVAPARDVTKAARDVLGLKKDAGA >gi|289558287|gb|ADCD01000023.1| GENE 34 42433 - 42729 98 98 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MADAAGSPASLAVRLERPPVPLDRARQPRRPSAWPPVPHVRVCEVATTAPIVSDGTRTAD PQHHCFRRRRVAAFGPCLYGKMGAVTVCSGPSVHPTLS >gi|289558287|gb|ADCD01000023.1| GENE 35 43508 - 43987 400 159 aa, chain - ## HITS:1 COG:no KEGG:Mlut_14030 NR:ns ## KEGG: Mlut_14030 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 159 1 159 159 187 94.0 7e-47 MSLIRRRPAALSLATLAALALAASGCAVDDGETRAALQSAEDRLAQAEDRISELEADASD RVDLGQLRQEAEGALEEADQRAAEVVEDLTRSLPSGSDIVDIEALREDGKVVIEYGRSAL EADPQVLEDTMREAAEQARNAIPNLEDVEFRVGDRTFTF >gi|289558287|gb|ADCD01000023.1| GENE 36 44092 - 44568 416 158 aa, chain - ## HITS:1 COG:Cgl1394 KEGG:ns NR:ns ## COG: Cgl1394 COG1160 # Protein_GI_number: 19552644 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Corynebacterium glutamicum # 1 156 383 538 543 209 62.0 2e-54 MVLDSGRALVIAFNKWDQVDEDRRLQLAKEIDRDLAHVAWAPRVNISAKTGWHKDRLVPA LDLALDSWDTRIPTGKLNAFLGELVAAHPHPLRGGKQPRILFATQVSSRPPKFVLFTTGF LDPGYRRFIVRRLRETFGFEGTPLEIGMRVREKRGRRR Prediction of potential genes in microbial genomes Time: Thu May 26 07:04:25 2011 Seq name: gi|289558286|gb|ADCD01000024.1| Micrococcus luteus SK58 ctg1119142777000, whole genome shotgun sequence Length of sequence - 594 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 332 183 ## SeAg_A0007 hypothetical protein Predicted protein(s) >gi|289558286|gb|ADCD01000024.1| GENE 1 3 - 332 183 109 aa, chain + ## HITS:1 COG:no KEGG:SeAg_A0007 NR:ns ## KEGG: SeAg_A0007 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_Agona # Pathway: not_defined # 7 107 46 146 147 154 70.0 1e-36 VPKSKQVDYNALSDKFFLTQDQGWSAPPGTLVDAWFEQFKSSFPEYGSDEKLANLLGIRS KGASRQIRAFRSGEKDIPYGIWRRFLVITGRASQEIYPVLGIFDIDEGF Prediction of potential genes in microbial genomes Time: Thu May 26 07:04:41 2011 Seq name: gi|289558250|gb|ADCD01000025.1| Micrococcus luteus SK58 ctg1119142780351, whole genome shotgun sequence Length of sequence - 38058 bp Number of predicted genes - 37, with homology - 32 Number of transcription units - 22, operones - 9 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 389 - 847 -167 ## 2 2 Tu 1 . + CDS 868 - 1446 -243 ## - Term 1629 - 1677 19.1 3 3 Op 1 . - CDS 1697 - 1972 203 ## Mlut_12200 hypothetical protein 4 3 Op 2 25/0.000 - CDS 2095 - 3804 1530 ## COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1 5 3 Op 3 . - CDS 3804 - 4529 644 ## COG1622 Heme/copper-type cytochrome/quinol oxidases, subunit 2 - Term 4840 - 4866 -0.6 6 4 Tu 1 . - CDS 5000 - 5392 328 ## COG0316 Uncharacterized conserved protein 7 5 Tu 1 . - CDS 5511 - 6914 1078 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases 8 6 Tu 1 . + CDS 6995 - 7618 404 ## Mlut_12250 hypothetical protein 9 7 Op 1 . - CDS 7685 - 8305 422 ## COG0167 Dihydroorotate dehydrogenase 10 7 Op 2 . - CDS 8302 - 8811 325 ## COG0167 Dihydroorotate dehydrogenase 11 8 Tu 1 . + CDS 8867 - 9976 861 ## COG2267 Lysophospholipase 12 9 Op 1 4/0.250 - CDS 9916 - 10779 634 ## COG0020 Undecaprenyl pyrophosphate synthase 13 9 Op 2 . - CDS 10776 - 11597 524 ## COG1381 Recombinational DNA repair protein (RecF pathway) 14 9 Op 3 . - CDS 11594 - 13327 1712 ## COG0119 Isopropylmalate/homocitrate/citramalate synthases 15 10 Tu 1 . + CDS 13218 - 13508 62 ## + Term 13646 - 13695 2.1 - Term 13581 - 13621 6.6 16 11 Op 1 1/0.250 - CDS 13663 - 14628 855 ## COG1159 GTPase 17 11 Op 2 13/0.000 - CDS 14672 - 15997 1170 ## COG1253 Hemolysins and related proteins containing CBS domains 18 11 Op 3 17/0.000 - CDS 16009 - 16422 322 ## COG0319 Predicted metal-dependent hydrolase 19 11 Op 4 1/0.250 - CDS 16472 - 17545 969 ## COG1702 Phosphate starvation-inducible protein PhoH, predicted ATPase 20 11 Op 5 4/0.250 - CDS 17586 - 18242 465 ## COG1385 Uncharacterized protein conserved in bacteria - Term 18269 - 18315 8.1 21 12 Op 1 3/0.250 - CDS 18344 - 19477 768 ## COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain 22 12 Op 2 . - CDS 19553 - 20566 845 ## COG1420 Transcriptional regulator of heat shock gene 23 13 Op 1 . + CDS 20736 - 21596 605 ## Mlut_12380 hypothetical protein 24 13 Op 2 . + CDS 21691 - 22110 364 ## COG3296 Uncharacterized protein conserved in bacteria 25 14 Op 1 4/0.250 - CDS 22126 - 23406 1031 ## COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases 26 14 Op 2 . - CDS 23407 - 25152 1890 ## COG0481 Membrane GTPase LepA 27 15 Tu 1 . + CDS 25378 - 26040 409 ## Mlut_12420 hypothetical protein 28 16 Tu 1 . + CDS 26236 - 26502 407 ## PROTEIN SUPPORTED gi|239917744|ref|YP_002957302.1| SSU ribosomal protein S20P 29 17 Op 1 10/0.000 - CDS 26605 - 27624 844 ## COG1466 DNA polymerase III, delta subunit 30 17 Op 2 7/0.250 - CDS 27635 - 30202 1103 ## COG0658 Predicted membrane metal-binding protein 31 17 Op 3 1/0.250 - CDS 30232 - 31089 514 ## COG1555 DNA uptake protein and related DNA-binding proteins 32 18 Op 1 . - CDS 31219 - 32193 699 ## COG1307 Uncharacterized protein conserved in bacteria 33 18 Op 2 . - CDS 32240 - 34579 2077 ## COG0495 Leucyl-tRNA synthetase 34 19 Tu 1 . + CDS 34319 - 34972 153 ## 35 20 Tu 1 . - CDS 34899 - 36536 977 ## COG3949 Uncharacterized membrane protein 36 21 Tu 1 . - CDS 36687 - 37415 358 ## 37 22 Tu 1 . - CDS 37554 - 38057 288 ## COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase Predicted protein(s) >gi|289558250|gb|ADCD01000025.1| GENE 1 389 - 847 -167 152 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGGEPLEDPEHRRCPSPAVSRDAPVERHLHPPRIRRRGPDARLSVPEPAGRDERGAPQLT PTRGGRRTRTPQRRTQRPGSRGGGALDRLVTPAAAVGGLSLGGRGGPPPGTPKGPAHPHS CTRSPLERASSASRALSVEVGVDPACIVSGPP >gi|289558250|gb|ADCD01000025.1| GENE 2 868 - 1446 -243 192 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MAPHHGWALRHPLVLGGRSAHGPRPRTPLPSVPSAAPAHHQLRPDTVERTGTGPESSACV PTPAGKDRRQTPQRVAAAGRGAPCTCKLWDTGRPPSGGARSSDGLTAKPDLSPRVAAVPG RGAPSCNSAIDQHTPWPGPGRERTYRPVTATVVSLGRAPARPSDARCRRWGQDTTITVGP YPGGDAPRPCRG >gi|289558250|gb|ADCD01000025.1| GENE 3 1697 - 1972 203 91 aa, chain - ## HITS:1 COG:no KEGG:Mlut_12200 NR:ns ## KEGG: Mlut_12200 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 91 43 133 133 128 86.0 6e-29 MSWMIAWYLRAAEHKYGVGPADDEDGQIVEYAGTYGTFAPWSWWPLGLGLGCAIIVTGLA VGWWVFIIGIVAAAYFTFGWVYEFSRGKYAH >gi|289558250|gb|ADCD01000025.1| GENE 4 2095 - 3804 1530 569 aa, chain - ## HITS:1 COG:ML1728 KEGG:ns NR:ns ## COG: ML1728 COG0843 # Protein_GI_number: 15827927 # Func_class: C Energy production and conversion # Function: Heme/copper-type cytochrome/quinol oxidases, subunit 1 # Organism: Mycobacterium leprae # 25 551 25 550 574 705 67.0 0 MTTYEYATDEVRSQAQPRVVPRSLGKIVVSWLTTTDHKVLGYMYLITSFVFFCIGGVMAL MIRAELFEPGMQILQTKEQYNQLFTMHGTLMLLMFATPLFTGFANVLVPLQIGAPDVSFP RLNALAFWFFLFGSLIATAGFLTPQGAASFGWFAYAPLSNTTYSPGVGGDLWVFGLVLQG FGTIMGGVNFITTILTMRAPGMTMWRMPIFTWNTLITGILIMVAFPPFASALFALGLDRR FGGHIFNPENGGAILWQHLFWFFGHPEVYIIALPFFGVVSEIIPVFSRKPIFGYKSIVFA TTAIAALSVTVWAHHMYVTGAVLLPFFSVMTMLIAVPTGVKFVNWIGTMWRGSITFETPM LWTLGFMVTFLFGGLTGVILASPPLDFQVSDTYFVVAHFHYVVFGTVVFAMFAGFFFWWP KFTGKMLNERLGKIQFWMLFVGFHGTFLIQHWLGVIGMPRRYADYMVEDSFQAMNAFSSV FSFVLGASLIPFFWNVYITSRYGKKVTVDDPWGFGGSLEWTTSCPPPRHNFHSLPRIRSE RPALDLHHPELFPHSPQNTSEAFGEKVAQ >gi|289558250|gb|ADCD01000025.1| GENE 5 3804 - 4529 644 241 aa, chain - ## HITS:1 COG:MT2256 KEGG:ns NR:ns ## COG: MT2256 COG1622 # Protein_GI_number: 15841691 # Func_class: C Energy production and conversion # Function: Heme/copper-type cytochrome/quinol oxidases, subunit 2 # Organism: Mycobacterium tuberculosis CDC1551 # 1 237 80 355 363 128 29.0 8e-30 MVVGLLAWGAMIWCMVAYRRRKNDQGFPKQTAYNVPLETMFTAIPILMVFTLWGFTDRVQ TEVDRPVDDSPLTVTVYGKQWSWDFNYSYEQENGEVIEAHYSGIQAQLDGTEGVRDTLPV LYLPNDVPVHFELKSRDVAHSFWIPQFLQKRDMVPGKTNHLYLTPQELGSYDGKCAELCG EFHSEMLFNVEVVDETEFVQRLEEMEPGQVGEEYSRNPNNNPDGAGTMERDLQTPRGGGS H >gi|289558250|gb|ADCD01000025.1| GENE 6 5000 - 5392 328 130 aa, chain - ## HITS:1 COG:ML0871 KEGG:ns NR:ns ## COG: ML0871 COG0316 # Protein_GI_number: 15827394 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Mycobacterium leprae # 14 130 2 118 118 152 64.0 1e-37 MALSAEETGVEIGATQDAEGLPPHEVELTDVAAGKVRSLLEQEGRTDLRLRVAVQPGGCS GLIYQLYFDERVLDGDTVRDYDGVEVIVDKMSVPYLMGATIDFEDTISKQGFTIDNPNAG GSCACGDSFH >gi|289558250|gb|ADCD01000025.1| GENE 7 5511 - 6914 1078 467 aa, chain - ## HITS:1 COG:MT2598 KEGG:ns NR:ns ## COG: MT2598 COG0624 # Protein_GI_number: 15842054 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Mycobacterium tuberculosis CDC1551 # 11 453 17 448 470 370 50.0 1e-102 MTDITSRAPQDAALVSAVREAVEARFPTTLQTLTDLVAIPGIAWDSADRTQLERSAEAVA GLLREAGLQHVEIVTETRDDGRPGGPAVIGEKPGASDKPTVLLYAHHDVQPIGDEDLWDT PPLVATQRGGRLYGRGAADDKAGIMVHLAALAALRDVLPDAGVGVRVFIEGEEEAGSPTF RTFLERHRARLDADAIVVADSSNWAVGEPALTTSLRGLVDGTVTVRVLDHAVHSGMFGGP VLDALVLLSRLIATLHDADGSVAVPGLEPRQTAGLDYPEDVFRADAGVLDGVTLAGRGPV ADRLWNAPGLSIIGIDAPSVAESSNTIQPAARAKFSLRLGPGMDPAEAFEALRTHLEAQS AAVLGAEITVTAGEFGQPFTTDTSAPAAAAMMAALEDAWGVEPRAIGMGGSIPFTADLAE VFPEATLLITGVEDPDTRAHSANESLHIDDFKRAVVAEALWLARLSA >gi|289558250|gb|ADCD01000025.1| GENE 8 6995 - 7618 404 207 aa, chain + ## HITS:1 COG:no KEGG:Mlut_12250 NR:ns ## KEGG: Mlut_12250 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 207 1 207 207 330 100.0 2e-89 MFKRDKTPETAPTPSTHGSSAAPAEGAAVAEAGPRDRSQGKKGPTPRRRDQEAARRRTLV PEDRKAARKAERQAMAQERMRQRAALETGDERGLPARDKGPQKRWVRDYVDARTGIGEWL MPVVFAYVLLMFIPGREAQLILMISLYVLVALVLIESFLVSRHIKKGLTERFGTPEPGTG FYGIMRALQFRRLRLPKPQVKRGEYPA >gi|289558250|gb|ADCD01000025.1| GENE 9 7685 - 8305 422 206 aa, chain - ## HITS:1 COG:Cgl1482 KEGG:ns NR:ns ## COG: Cgl1482 COG0167 # Protein_GI_number: 19552732 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotate dehydrogenase # Organism: Corynebacterium glutamicum # 1 206 155 353 371 196 53.0 3e-50 MNIGKTKVVPLEDAADDYRASTRLLAPHADYLTVNVSSPNTPGLRQLQEIDALEPILTAV REEADRAVPDRRVPLTVKIAPDLADDDVRAVGALAERLGLDGVIATNTTVSREGLRTPRA DVDALGAGGLSGAPLQERSMRVLEVLRAALPAGTAVVSVGGVTDAADVQARLDAGADLVQ GYTAFLYEGPFWAGRITAGLARSLRG >gi|289558250|gb|ADCD01000025.1| GENE 10 8302 - 8811 325 169 aa, chain - ## HITS:1 COG:STM1058 KEGG:ns NR:ns ## COG: STM1058 COG0167 # Protein_GI_number: 16764417 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotate dehydrogenase # Organism: Salmonella typhimurium LT2 # 21 142 1 119 336 122 50.0 2e-28 MQLPDPKSAVDGLLTSRAPRLYPPFFRAVFGGMDAERAHHRGFDAIRLVERTGASAALRA AFRPDPLLARTVMGLRFPTPFGLAAGFDKDGRGTAALADLGFGHIEVGTITAQPQPGNPQ PRLFRLVDDRALVNRMGFNNDGAAAVAPAWRGPGRHWSAASARPGRSWA >gi|289558250|gb|ADCD01000025.1| GENE 11 8867 - 9976 861 369 aa, chain + ## HITS:1 COG:MT2921 KEGG:ns NR:ns ## COG: MT2921 COG2267 # Protein_GI_number: 15842395 # Func_class: I Lipid transport and metabolism # Function: Lysophospholipase # Organism: Mycobacterium tuberculosis CDC1551 # 40 367 3 346 346 181 37.0 2e-45 MARDPLQPPPPDPSAPHGAPAGGPTEEDTRPFLDDPPGLGWVPDGLPGFERCTLGLDTDE QGQNLVTVVRPRTDAGRDPARRPILSVHGWSDYFYNAPLAHAFEAAGYAFHAVDLRHYGR SLRAGQTPGWTDDLTRYDADLEAAFETIAQDHPLPPILMGHSTGGLIAALWADRNPGRLA ALVLNSPWLEMQGSAGVRLLAKSIVGPVSAMKPYAVLTLPRIDHYWRTLSDQAEGEWDLH PLWRPPHAFEVPAAWLSAVLSGHRAVAGRLDVSVPILVLVSARGHRGTSYAEAMLTSDIV LDPDAMARRSLRLGDRVTVHRLPDALHDVFASPASVREAAGAATLTWLGAYAPPSASAAE SGAPDDGAG >gi|289558250|gb|ADCD01000025.1| GENE 12 9916 - 10779 634 287 aa, chain - ## HITS:1 COG:ML0634 KEGG:ns NR:ns ## COG: ML0634 COG0020 # Protein_GI_number: 15827262 # Func_class: I Lipid transport and metabolism # Function: Undecaprenyl pyrophosphate synthase # Organism: Mycobacterium leprae # 2 264 42 296 296 297 59.0 1e-80 MSADRAPQPPPPHPSGAVAPRIDPRFVPRHVAIVMDGNGRWANQRGLPRTEGHRAGEAAL LDVVAGAVELGIGHVSAYAFSTENWRRSAEEVRFLMGFSRDVLRRQRDTLHSWNVRIRWN GRAPRLWTPVIRELQEAEELTRHNTGTTLHMCVNYGSRAEILDGVQAIAEEVRAGRMRPG EISEDVITRYLDRGFRTGQDVDVVPDVDLFLRTSGEQRLSNYLLWQSAYAELLFLDVLWP DVDRRTLWAAVETYARRDRRYGSAVDTPQPAPSSGAPDSAADADGGA >gi|289558250|gb|ADCD01000025.1| GENE 13 10776 - 11597 524 273 aa, chain - ## HITS:1 COG:MT2431 KEGG:ns NR:ns ## COG: MT2431 COG1381 # Protein_GI_number: 15841874 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecF pathway) # Organism: Mycobacterium tuberculosis CDC1551 # 21 260 4 242 265 196 47.0 4e-50 MSGSDSSRRGARHGGYAANSFRTEAIVLRTHRLGEADRIIEALTPEHGLVRAVAKGVRKT SSRLGSVVEPFMHSTLQLARGRGELHTVSQAQLLHPYAAMLAADYDAYTVAGAIAEAVER VPAVDDDGRRAQYRLFHGALAALARGAHDPRLILHSFLLRALAQAGWAPTFDRCARCGAP GPHTALHVGLGGAVCPECRPPGAAHPAPETFDLLSALAAGDWTTADASGAPARREAAGIV AAYLQFHAERRLVSLSVLDQDLGLPAPRVERKP >gi|289558250|gb|ADCD01000025.1| GENE 14 11594 - 13327 1712 577 aa, chain - ## HITS:1 COG:ML2324 KEGG:ns NR:ns ## COG: ML2324 COG0119 # Protein_GI_number: 15828249 # Func_class: E Amino acid transport and metabolism # Function: Isopropylmalate/homocitrate/citramalate synthases # Organism: Mycobacterium leprae # 6 575 39 605 607 714 63.0 0 MSAHLQKSSGMKFHKYVPFQNQIEVALPDRTWPDKVIEKAPLWCAVDLRDGNQALIDPMG PERKLRMFQLLVGMGFKEIEVGFPSASQTDYDFVRQLIEGDHIPDDVTIQVLTQSREHLI ERTFEALEGADRAIVHLYNSTSVLQRRVVFRQDEDGIVDIATSGARLVKKFEEQLKGTQI TYEYSPESYTGTELEFARRISDEVATVLEASTDRKMILNLPATVEMSTPNVYADSIEWMH RNLEHRDSLILSLHPHNDRGTGVAAAELGYLAGADRIEGCLFGNGERTGNVDLVTLGMNL YSQGVDPMIDFSDMDHIKRTVEYCNQLAVPERSPWGGDLVFTAFSGSHQDAIKKGFEAME VDAKAAGTDVDGIPWAVPYLPIDPKDIGRSYEAVIRVNSQSGKGGVAYLLKSEHNLDLPR RAQIEFSHVIQDLADAQGGEVSGADLWRVFQDEYLPADAAEAQWGRYRLRSVSSASGEDG TFRMEAELEVDGVTQTRTAQGNGPIDAFLRILGEEGVDVRVLDYSEHALSEGGAAMAAAY VEAAVGDRVLWGVGLDHNTTTASLKAVVSAVNRALRA >gi|289558250|gb|ADCD01000025.1| GENE 15 13218 - 13508 62 96 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTLSGQVRSGRATSIWFWNGTYLWNFIPDDFCRWALMRVLPRRARGGRAKGGWSVAGPGG QGLRTGCPVRWEASCLRMRSGGVDHGLARGPRAAGK >gi|289558250|gb|ADCD01000025.1| GENE 16 13663 - 14628 855 321 aa, chain - ## HITS:1 COG:MT2433 KEGG:ns NR:ns ## COG: MT2433 COG1159 # Protein_GI_number: 15841876 # Func_class: R General function prediction only # Function: GTPase # Organism: Mycobacterium tuberculosis CDC1551 # 14 321 4 300 300 366 67.0 1e-101 MTDLVDPARAADGFRSGFVSLVGRPNAGKSTLTNALVGEKVAITSSKPQTTRHTIRGIVH REDFQLVLVDTPGLHRPRTLLGERLNDLVAETLNEVDAVGMCLPADEAIGPGDRFIAQQL SYLHRTPVVAVVTKTDKVGPEQLMAQLVAVTALGDEVLGPENGGEGFAAVVPVSAVAGRQ VDDVLGVFAGLLPAGPPLYPDGELTDEPEAVMVAELIREAALEGVRDELPHSVAVVVEEM SLREDRPADRPLMDVWANVFVERDSQKGIIIGKGGSRLREIGAQARAGIERMLGTKVHLD LRVKVAKEWQRDPKQLGRLGF >gi|289558250|gb|ADCD01000025.1| GENE 17 14672 - 15997 1170 441 aa, chain - ## HITS:1 COG:Cgl2234 KEGG:ns NR:ns ## COG: Cgl2234 COG1253 # Protein_GI_number: 19553484 # Func_class: R General function prediction only # Function: Hemolysins and related proteins containing CBS domains # Organism: Corynebacterium glutamicum # 12 409 16 422 440 222 38.0 1e-57 MLTPALLFALFLVFLGLTWTLSLAESAFSYLSRRDAEDIVREQPGSKALEIARERESHLG ALRVWRFVAEALSAVCLTAAADAVVDDTWLAVAIAAVVLVGVAALLGVWSPRPIGSRNEA AVARRLGGLVWVLRRALGPLAARLDRDRRRREVEPEDEDDFQERHLREFVARAHDADVLA DSEAELIQSVFSMNDTIVRSVMVPRTDVVTIDADHTLGQAMALFLRSGNSRIPVIGEDAD DIRGMLHLKDVTRALHHDGAATDTPVTEVMRDVRFVPESKSVATLLQELQRESTHVAVVV DEYGGTAGLVTLEDLIEEIVGEIYDEDDHPDRPEVEFVAPGVYSVDARMGIHDFREEFEL PEEDEDDDVDTVGGLLAKELGRVPIQGSRVVVQGIELVADTLEPRRNRVARLRVSETPDR PVRLRRREEQAHGAAPADPVA >gi|289558250|gb|ADCD01000025.1| GENE 18 16009 - 16422 322 137 aa, chain - ## HITS:1 COG:MT2436 KEGG:ns NR:ns ## COG: MT2436 COG0319 # Protein_GI_number: 15841879 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase # Organism: Mycobacterium tuberculosis CDC1551 # 1 124 21 147 177 120 59.0 5e-28 MARHVYTRLHVHERAETAVTVVDAARMAELHEEWMDLPGPTDVMSLPMDELTPGSPEAPA EGVLGDVVLCPEVAAEQAARGGHSRDDELLLLLTHGMLHLLGYDHLEDADREEMFGLQDR LVSEVLGRPAPAPTVED >gi|289558250|gb|ADCD01000025.1| GENE 19 16472 - 17545 969 357 aa, chain - ## HITS:1 COG:MT2437 KEGG:ns NR:ns ## COG: MT2437 COG1702 # Protein_GI_number: 15841880 # Func_class: T Signal transduction mechanisms # Function: Phosphate starvation-inducible protein PhoH, predicted ATPase # Organism: Mycobacterium tuberculosis CDC1551 # 37 344 30 335 352 336 62.0 4e-92 MSRPRDPEVIRPIVTVPPTTPTPPATAHEGVAFESADLMVRTLGPQDALLRILGGVFPTV DVTVRDQRLDLAGPVADVATVRRVVEDLRSIARRDQAVTPEVMGQVVHHVRGAATGRGAG QLHLDSILSGRGRRIRAKTLHQQDYVEAIDRSTVVFGVGPAGTGKTYLAMAKAVQALQAK EVNRIILTRPAVEAGERLGFLPGGLSEKIDPYLRPLYDALHDMIEPESIPRLMEAGTIEV APLAYMRGRTLNDAFVILDEAQNTTGEQMKMFLTRLGFGARMVVTGDTSQVDLPRGTQSG LAQAVEVLEGIEGLEMVRFDSSDVVRHSLVSAIVDAYDAARGPAERSQKRGGARRGR >gi|289558250|gb|ADCD01000025.1| GENE 20 17586 - 18242 465 218 aa, chain - ## HITS:1 COG:Cgl2237 KEGG:ns NR:ns ## COG: Cgl2237 COG1385 # Protein_GI_number: 19553487 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Corynebacterium glutamicum # 2 218 33 241 241 118 38.0 6e-27 MRLAPGEAVILADGSGTLGHGTVLAAAPDGVSVRLDAVAEEPAPTPALVLVQALAKGDRD LMAVQAAVELGVDAVVPWEAERSIVRWKGPKAAKARQKWADTARAAAKQARRARVPAVRD HVSGTAVAGLVRDDDGGRLVLVLHEDAERGVSSVPTERLSAAAEIAVVVGPEGGIGPAEL EACVAAGAVPVRLGPHVLRASTAGPAALAVLQHRLGRW >gi|289558250|gb|ADCD01000025.1| GENE 21 18344 - 19477 768 377 aa, chain - ## HITS:1 COG:ML0625 KEGG:ns NR:ns ## COG: ML0625 COG0484 # Protein_GI_number: 15827255 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: DnaJ-class molecular chaperone with C-terminal Zn finger domain # Organism: Mycobacterium leprae # 3 376 4 377 378 286 46.0 3e-77 MTDHYETLGVSRDASTEEIRRAYRKLARTHHPDVNPDPEAAEQFKRISHAYEVLSDEGRR RAYDTTGNENGQAGFPGGFGGAGGFGGFADIFETFMNAAGQGGRGGPASRARRGQDALVT ARIDLRDAVFGGEQTIELDTAVRCERCEGSCCEPGTQPETCQTCHGHGMIQRPVRSLLGT VMATEACPACQGFGTVIPTPCHECDGQGRVRTRTPLTLRIPAGVDDGTRIHLAGRGEAGP GGGPNGDLYVEIAVRPDETFRREGDHLATTVTVPMAAAALGTTVTLDTLDGKQSVSLDPG VQSGHVEVLQGLGVGRLRGQGRGDLKVDVVVTTPTDLDDEQRQLLERLAEVRGEEVVHGA PQARGMFARLRENLRNL >gi|289558250|gb|ADCD01000025.1| GENE 22 19553 - 20566 845 337 aa, chain - ## HITS:1 COG:ML0624 KEGG:ns NR:ns ## COG: ML0624 COG1420 # Protein_GI_number: 15827254 # Func_class: K Transcription # Function: Transcriptional regulator of heat shock gene # Organism: Mycobacterium leprae # 6 335 7 340 343 288 53.0 8e-78 MSEQPRRLQVLQAIVEDYVALREPVGSKALVERHALGVSSATVRNDMAALEEEGLIVAPH TSAGRVPTDKGYRVFVDRLSEVKPLSPAERRAVRTLLDPETDTEHMMESTVRLLAQLTQQ VAVAQFPHEDGSTIRHLELVSLTPTRLLVVLILSTGRVDQRHAVLDRPVDEAELSVLRGL LLDALLGLGPVQAAAVVDDVVTRVRPEHRPSAALVAAAVQDLLEAGRQDRIVLAGTANLA RSPGDFGASIGPILEALEEQVVLLRLLTEMEQDAHGVSVRIGSENAGSLADTSVVAAAYG PGAVAKLGVIGPTRMDYPGTMAAVRAIARYLSRILTT >gi|289558250|gb|ADCD01000025.1| GENE 23 20736 - 21596 605 286 aa, chain + ## HITS:1 COG:no KEGG:Mlut_12380 NR:ns ## KEGG: Mlut_12380 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 286 1 286 286 469 98.0 1e-131 MDWSSWGPAGHDDLTRRPARTVPDVPAAPGTVVEDVASGFTGAVIGIERSGGVHVVVLED RRGVRRGFPLGGGFWIDGEPVTLVPPTAAAPAAPTRTASGSRRVEGARARTARASRIWVE GVHDAELVEKVWGEDLRLEGIVVEPLHGVDDLAGAIRTFAPGPRRRLGILMDHLVTGSKE ERLAAEAMRVPGAAGNVLILGHPYVDVWQVIKPSVLGIPAWPVVPKGQDWKTGILRGLGW PHGSKEATGLGWKRLLSHVTTYADLEPSLLGRVEELIDFLTAAPEH >gi|289558250|gb|ADCD01000025.1| GENE 24 21691 - 22110 364 139 aa, chain + ## HITS:1 COG:PA5333 KEGG:ns NR:ns ## COG: PA5333 COG3296 # Protein_GI_number: 15600526 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Pseudomonas aeruginosa # 39 139 26 123 123 61 38.0 6e-10 MNTRAQPDAGRTGHGPPAWLVSAGGRGAPLTAKQDRDRAALAHLSLAFGVLGPLVVWLLY RDRGPFTSQESREALNFSGPPTLITLLFFFLSLLPVVGPIFAILGALTWAAMAVYGVMGA SHVSKGRPFRYPFNLRILR >gi|289558250|gb|ADCD01000025.1| GENE 25 22126 - 23406 1031 426 aa, chain - ## HITS:1 COG:Rv2388c KEGG:ns NR:ns ## COG: Rv2388c COG0635 # Protein_GI_number: 15609525 # Func_class: H Coenzyme transport and metabolism # Function: Coproporphyrinogen III oxidase and related Fe-S oxidoreductases # Organism: Mycobacterium tuberculosis H37Rv # 33 425 3 375 375 285 47.0 9e-77 MPALPLGEPVPDDGRLPADVGQRVRAAAGDGAARTFSLYVHVPFCTVRCGYCDFNTYTAV DLGPGAGRGDYWESAVTELDFAADVLASSDVPARPLHTVFFGGGTPTLLPAADLVRILQA AVDRFGIAPGAEVTTEANPDTITPEYARELAAGGFTRLSLGMQSAVPHVLATLERTHRPE SVPAAVAAAREAGLEVSLDLIYGTAGESLADWRATLEAAVALAPDHVSAYSLIVEEGTKL GAQVARGEVADVDPDDQADKYLLAEELLSAAGYRWYEVSNWARDPQGSGVHRARHNVAYW EDQDWWGIGPGAHSHLAGVRFWNAKHPAAYAQRLATGVTPAVGRERPDADARRLERIMLA VRTVDGLPTAELVSETPGEAARIRGAIAELIAAGLLDGRAAVNGSIVPTLEGRLRNDAIV RALAGF >gi|289558250|gb|ADCD01000025.1| GENE 26 23407 - 25152 1890 581 aa, chain - ## HITS:1 COG:MT2476 KEGG:ns NR:ns ## COG: MT2476 COG0481 # Protein_GI_number: 15841921 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane GTPase LepA # Organism: Mycobacterium tuberculosis CDC1551 # 1 574 72 648 653 887 76.0 0 MLQATGVVQPRDMKAQYLDRMDIERERGITIKSQAVRMPWSVDGVDYALNMIDTPGHVDF TYEVSRSLAACEGAILLVDAAQGIEAQTLANLYLAMEHELEIIPVLNKIDLPAADPDRYA AELASLIGCEPEDVLRVSGKTGVGVEELLDRVVRAIPGPEGDADAPARAMIFDSVYDTYR GVVTYVRVVDGRLSPREKVRMMSTGTTYELLEIGVSSPEPVPTKGLAAGEVGYLITGVKD VRQSKVGDTVTNHAHPAEQSLGGYEDPKPMVFSGLYPIDGSDYPVLRDALDKLKLNDAAL VYEPETSVALGFGFRVGFLGLLHLEIVRERLEREFDLDLISTAPNVVYEVTREDREVVTV TNPSEFPEGKILEVREPMASATIIVPAEFIGAVMELCQAKRGNLKGMDYLSEERVEIRYW IPLAEIVFDFFDQLKSRTKGYASLDWKADGDQAADLVKVDILLQGEQVDAFSSITHKDNA YAYGVMMTGKLKELIPRQQYEVPIQAAIGSRIIARENIRAIRKDVLSKCYGGDISRKRKL LEKQKEGKKRMKMVGRVEVPQEAFIAALSSDGAGADQAAKK >gi|289558250|gb|ADCD01000025.1| GENE 27 25378 - 26040 409 220 aa, chain + ## HITS:1 COG:no KEGG:Mlut_12420 NR:ns ## KEGG: Mlut_12420 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 206 1 206 220 302 99.0 7e-81 MAFDLHRALSLGRRTARLIGALRDDARPRRAASEAGRRAGDRSGPSPFPGPPGPPGPAWD PTEPTDSWPMPGPGQERRPRRQDTGRHASLPDFTGTVRVEYAPVPGPTAGPGEVVWTWVP YEEMDGRGKDRPVLLIGRDGAHLLGLMLTSRDRNNALARDEDYVDVGAGAWDRSGRASEA KLDRVVRVDPAAVRREGGVLDRAAFDRVTAALARARRRGR >gi|289558250|gb|ADCD01000025.1| GENE 28 26236 - 26502 407 88 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239917744|ref|YP_002957302.1| SSU ribosomal protein S20P [Micrococcus luteus NCTC 2665] # 1 88 1 88 88 161 98 6e-39 MANIKSQKKRILTNEKARQRNVAVKSELKTAIRAVDKAVAAGEAEAAAAALRTASRKLDK AASKGVIHKNQAANRKSGIAARVKALLG >gi|289558250|gb|ADCD01000025.1| GENE 29 26605 - 27624 844 339 aa, chain - ## HITS:1 COG:Cgl2295 KEGG:ns NR:ns ## COG: Cgl2295 COG1466 # Protein_GI_number: 19553545 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, delta subunit # Organism: Corynebacterium glutamicum # 57 339 50 331 331 160 37.0 4e-39 MSAARSPRSGRAGRTDPLAWRRAEPAPLMLLKGPEDHAARWVTDRVTQALRERHGQLEIH RLRAGEYQPGQLATAASPSLFAEPTLITVEGLEAMNDAFLEDALRLVQQGPGAEDVTLVL RHTGGTRGKKLLDAVAQAGTVVECVPLKKDEERLAFVQAEFRDRRRRIDEEAARALIRAT GASLTELAAACAQLVDDTEGVVTVETVDTYYSGRVEATSFAVADAALEGQAARAVSLVRH AMATGVHPVMITAALALKARQVARMIDARRPAAELPSLLGVAPFQVRYIQQAARHWTAAG IAQAVEWIAQADAEAKGASRNPEFAVERAVIRVATAVSR >gi|289558250|gb|ADCD01000025.1| GENE 30 27635 - 30202 1103 855 aa, chain - ## HITS:1 COG:Cgl2296 KEGG:ns NR:ns ## COG: Cgl2296 COG0658 # Protein_GI_number: 19553546 # Func_class: R General function prediction only # Function: Predicted membrane metal-binding protein # Organism: Corynebacterium glutamicum # 230 507 163 438 554 124 39.0 7e-28 MDRRARHREVPGPLDARWVPALLACLTLGILGVGWNAPARSAAALTGLAVAAAAVLGAAR STGRIRGVATATALAGVAAALMLQHSAGPAAAAEGSGWTGAVHAGSPLRLELTLDGPATR SEAAFGPRWSVPVRVETFGNPPRATEAPVTARLTGAGPPPETIAAPSDGTTAPDGGPGSR VCVVARPSRSGSTVFLAAASAPQPGPCPSGTQTAGGATGGDPGPPRREALRAAFRQSAEG TVGAAPELIPGLVLGDRSAQGAALDDAMKASGLSHLSAVSGANVAMILGAVAITLRCARV HRAVVLSAGLAVLGVFVVVVGPEPSVLRAAVMGALGALAVFFGRAREAFGLLTVGGTALL VAVPALAVEPAFHLSLAATAGIVLGGAPLDRALHAGLGRVLPDVVARWLSASLAVTVAAH LACQPIILAMTGEVSAYAVPANLLAAPAVPPVTVLGTLAAALALPAPGIAAALVAVIQWP AAWIGWVAHTSASLPGALRPWPAGALGAGLGVLLVAATLLGFAAVLLLERRRAAPVRRVG RSAPRTRERLPALVVLAAALAAATTGAVGAVLVPRASGAAPPDWAVAFCDVGQGDMAVFR SGPRAGVVVDVGPEPGLARRCLDDLEVDRVDAVLLTHLHADHAGGLAGVVDRAAPGAVHY ATRDAPAQGRGDRGGEAEGVDPPADAARLRTGAMGTAGPVRWHVLLADARAPEENDASAQ VLVTVESEAGPVTTLITGDMEEDASAAWIAGRRSDAAAPPRVDVLKVAHHGARNGGTAVP RAVGARLHVVSVGADNPYGHPHRATVDALGRLGPVARTDLHGTLALTAADGPDPDGAPEI TAHTVRPPSSVRTGP >gi|289558250|gb|ADCD01000025.1| GENE 31 30232 - 31089 514 285 aa, chain - ## HITS:1 COG:BH1333 KEGG:ns NR:ns ## COG: BH1333 COG1555 # Protein_GI_number: 15613896 # Func_class: L Replication, recombination and repair # Function: DNA uptake protein and related DNA-binding proteins # Organism: Bacillus halodurans # 127 279 71 203 210 89 38.0 8e-18 MSPSHRLCDDPPAFAPDPAPAAVPDVDTAGPHAASGWERTPPRGPVLRWRPALLAVTVLL VAAAAWWAVAWLTTPAPPAGIPAAAAGAGIPQTGATSAAPSAAGTDARTSEAGPSGEAPE PAGSGPLRVHVVGEVARPGVVSLAPGSRVADAVRAAGGTTRHARAERINLAAPLDDGQQV LVPSAHTPQDALDRVAGAAQAQPTPTTGGAGAGGEPGGAESGDTVDLNTADATELQTLPG VGPATAEKIIAHRETVGPFTGLQDLDAVPGIGPATLDRLRDHVSW >gi|289558250|gb|ADCD01000025.1| GENE 32 31219 - 32193 699 324 aa, chain - ## HITS:1 COG:FN1927_2 KEGG:ns NR:ns ## COG: FN1927_2 COG1307 # Protein_GI_number: 19705232 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Fusobacterium nucleatum # 37 235 3 201 285 108 33.0 1e-23 MASIEQWRDDALVRLRSRRSQLAGRARYGLRPPRRDRTAVVTDSAAALPGAVLGHGLAAG IRQVALPVMVGEQIHTEGTDELALELPLALAAGTPVRTSRPSPGAFRTVYAELARAGYAR ILSVHLSGELSGTVEAARLAAADAERPVTVVDSRTVGFALGTAVVDAAVDAGVGMPVARI RERLEATVDSSHVLFTVPSLEQLRRGGRISGLASLLGTLLQVRPVMAVDDGAIGLVDRPR SAARAVDRLVELAVERAGGDPVRIAVHEYGDPETAVQLAERLQPISTTPVPVVELPAVLA AHLGLGALGVVICPLESPTGGSGD >gi|289558250|gb|ADCD01000025.1| GENE 33 32240 - 34579 2077 779 aa, chain - ## HITS:1 COG:TM0168 KEGG:ns NR:ns ## COG: TM0168 COG0495 # Protein_GI_number: 15642942 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Leucyl-tRNA synthetase # Organism: Thermotoga maritima # 1 778 39 824 824 781 46.0 0 MFPYPSGDLHMGHAEAFAMGDVVARHWMQRGFDVLHPIGWDSFGLPAENAAIKRDAHPAE WTYANIETQKRSFQRYGIAVDWSRELHTSDPEYYRWTQWLFQQLYRKGLAYRKDSPVNWC PQDQTVLANEQVVDGRCERCGTEVTKRTLNQWYFRITDYADALLDDMDQLTGHWPERVLA MQRNWIGRSEGAHVDFQVEDGPVVTVFTTRPDTLHGATFMVVAADAPMAAELAGDDVRAE LEAYREDLKKVSDIDRQATDRPKSGVFLGRHAVNPLTGERLPIWASDYVLADYGTGAIMA VPAHDQRDLDFARAMGLPVRTVLDTGEEDPAVSGVATTGEGTLVNSGELDGLDKTAAIAR AIEIVEERGTGRGTTTYRLRDWLLSRQRFWGTPIPVVHCPDCGEVLVPEDQLPVTLPTDL KGEQLAPKGQSPLAAATSWVEVDCPRCGGPARRDTDTMDTFVDSSWYMLRYASPNDDARV FDPEALRRWLPVDQYVGGVEHAILHLLYARFFTKALHDLGLVPFTEPFRALLNQGQVLNG GKAMSKSLGNGVNLGDQLDEFGVDAVRLTMVFASPPEDDVDWADVAPGAAGKFLARAWRL ARDVRATGAPAGTDPADGAAALRRVTHRTVHEAQQLLDDGKFNVVVAKTMELVNAARKEI DAGAADPAVREAAEAVAVLLSLVAPYTAEDMWVLLGHEPSVIRAGWPPVDEALLVEDTVT AVVQVKGKVRDTLEVPADITAEDLEARARASQKVRNFIGDAEIVKVIVREPKLVNLVIR >gi|289558250|gb|ADCD01000025.1| GENE 34 34319 - 34972 153 217 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MQLTGPVHGDAVPLEGALLRLDVRVGPLGRVGVALDGGVLGRQAEGVPADGVQHVEAALH PVTRDDVAHRERLRVPHVQVARGVGEHVDHGAGLGAVLARGERPGLLPVPGPAGLHVAER VLRVGGDAGGGRHGAVGGLAHGGSSPHAIGMGRRPSGGADGAGGTAGHPILRRRRPGPAA GPLRDAVPGRAGAFRRRGCRLLAARARRRDRDAPRRR >gi|289558250|gb|ADCD01000025.1| GENE 35 34899 - 36536 977 545 aa, chain - ## HITS:1 COG:Cgl1071 KEGG:ns NR:ns ## COG: Cgl1071 COG3949 # Protein_GI_number: 19552321 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Corynebacterium glutamicum # 111 474 3 366 400 295 47.0 2e-79 MARQHAGIGGRRGRAQQIAQADGRARGGGRRRDRHVPTLARPVGNLTDVTHTSRTLLLHL RPRRPEPGDAWSWPRWRADAYGVAARPRPRGPDGRAPPPTKGPCVQHPVALRSLKIALAF VGLLVGAGFATGAEVIQYFVGFGWIGIVGAGLAGLLVTAGGAVILQLGSVFLAADHKVVF RSVSHPVMARILDVVVTVTLFAIGVVMLAGAGSTLAQQFGWPTWAGSTLMTLLVLVTGML DVEKVSAIISLITPLVILAVVAGFVHVLVTRDGGFTAHESLAVQATTPVDPWWLSSVNYF GLVVVMAVSMCLVIGGSITHPREAFLGGLTGGLMYTALLLMASMLLYLGYAEIGRADVPM LRLFASIAPWLGWAMVVVIYLMIYNTAIGMFYALGRRLTAEHPGRYRPVFTGVTLLAFAV SFVGFGDLMNVVYPALGHLGIVLALVLLAWWLTHRRQITAESGLRLRLLALLRLREHPEK TFTAQHAVQLQEAVGDSVAAPGAVTEALEDEVAQVLEEDDTVTSDEVRPGPDAGPERPAG GSHAA >gi|289558250|gb|ADCD01000025.1| GENE 36 36687 - 37415 358 242 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MPDAVEDVQLRCAARVVDRRGERLLCRHRAQRILSPRDQQHRQGEAGGDVGHGARARGAV RLGEHARGGEAREVAPVLVMGVRKDIPVPGAGHGERGHPHDRRRAQQQPRRALGQAGGDL VVPLGDGRQHPTRRGRRRLQRGFGDGVEQDQPSPPGRLPGDQLGRHRRPIGMCDQHGGGR QPQGGDDGGHRVRVMGHGVLGVGEGLRGPEAGQLDRVDRMLRERVGQQGEAVVVPAEAVH EH >gi|289558250|gb|ADCD01000025.1| GENE 37 37554 - 38057 288 167 aa, chain - ## HITS:1 COG:Cgl1564 KEGG:ns NR:ns ## COG: Cgl1564 COG1198 # Protein_GI_number: 19552814 # Func_class: L Replication, recombination and repair # Function: Primosomal protein N' (replication factor Y) - superfamily II helicase # Organism: Corynebacterium glutamicum # 4 163 534 684 688 65 35.0 4e-11 GRVLARWLAAACLVRPASDGGVVVVTADAGEAVNALVRRDPDGFAARQVAERRELHLPPA GRLAEVTGEAAAVAEYLELVEAARRERPDEDVHEDPHSAPLDGGPARLPWIGPVPDPADE TRSRALLIFPYAAAEATVGALRAARSAASARRETAPVRVRLDPAGVL Prediction of potential genes in microbial genomes Time: Thu May 26 07:05:53 2011 Seq name: gi|289558239|gb|ADCD01000026.1| Micrococcus luteus SK58 ctg1119142780334, whole genome shotgun sequence Length of sequence - 11428 bp Number of predicted genes - 11, with homology - 11 Number of transcription units - 8, operones - 2 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 372 136 ## Mlut_15280 DNA/RNA helicase, superfamily II + Term 379 - 408 2.8 2 2 Tu 1 . - CDS 491 - 1342 741 ## COG0613 Predicted metal-dependent phosphoesterases (PHP family) 3 3 Op 1 . + CDS 1405 - 3015 1448 ## COG0006 Xaa-Pro aminopeptidase 4 3 Op 2 . + CDS 3049 - 4854 1407 ## COG0469 Pyruvate kinase 5 4 Tu 1 . - CDS 4861 - 5637 592 ## Mlut_15320 hypothetical protein 6 5 Op 1 3/0.000 + CDS 5730 - 6998 907 ## COG2239 Mg/Co/Ni transporter MgtE (contains CBS domain) 7 5 Op 2 1/0.000 + CDS 7039 - 7845 719 ## COG4420 Predicted membrane protein 8 5 Op 3 . + CDS 7842 - 8990 813 ## COG0489 ATPases involved in chromosome partitioning 9 6 Tu 1 . - CDS 9039 - 9536 374 ## Mlut_15360 twin arginine-targeting protein translocase TatB 10 7 Tu 1 . - CDS 9711 - 10583 573 ## Mlut_15370 hypothetical protein 11 8 Tu 1 . + CDS 10780 - 11428 390 ## COG4122 Predicted O-methyltransferase Predicted protein(s) >gi|289558239|gb|ADCD01000026.1| GENE 1 1 - 372 136 123 aa, chain + ## HITS:1 COG:no KEGG:Mlut_15280 NR:ns ## KEGG: Mlut_15280 # Name: not_defined # Def: DNA/RNA helicase, superfamily II # Organism: M.luteus # Pathway: not_defined # 27 123 501 611 611 77 76.0 2e-13 GGREGGRSRDGERGGRGQGGRSGEGRDAARGGGRGERSERSGRGRGETPAEQRAEGRGRG RGEGRERTASRSEAPAARTPAPVAGVELTEARRAERAEARAEARRRRGGRTRTRRRNGEV VDG >gi|289558239|gb|ADCD01000026.1| GENE 2 491 - 1342 741 283 aa, chain - ## HITS:1 COG:BH2283 KEGG:ns NR:ns ## COG: BH2283 COG0613 # Protein_GI_number: 15614846 # Func_class: R General function prediction only # Function: Predicted metal-dependent phosphoesterases (PHP family) # Organism: Bacillus halodurans # 5 250 8 255 290 124 37.0 1e-28 MARYDLHTHSTESDGTEPPADVVRAAARAGLDGLALTDHDTTAGWAEAAQAARETGLTLV PGMEMSCTSADGVSVHVLSYLHDPEDPALLREVGLARDARLIRAQEMVRRLGADFPITWE LVQEHAAENATIGRPHLADALVTIGAVPDRSAAFTEILAGRSKYYVPHFAPDPAEAVALI RAAGGVPVFAHPRARMRGRVVGDEVFEQMAEAGLAGVEVEHRDNPAEERTWLRAFADRHG LFVTGSSDYHGTGKPNPIGEHTTGAEVLAEIERQGTGTAIIRG >gi|289558239|gb|ADCD01000026.1| GENE 3 1405 - 3015 1448 536 aa, chain + ## HITS:1 COG:ECs3779 KEGG:ns NR:ns ## COG: ECs3779 COG0006 # Protein_GI_number: 15833033 # Func_class: E Amino acid transport and metabolism # Function: Xaa-Pro aminopeptidase # Organism: Escherichia coli O157:H7 # 79 532 9 436 441 202 33.0 1e-51 MMEGMTDAAQHPAQTTPDQPAATTEAGADGTGAVNPQPLAERVDNRSQRPASNAFRDFMA SDWAPSSQALPDPDASAPYAARRRAAVSARFPGERIVVPAGRLKVRSNDTDYRFRAHSAF AHLTGLGVDHEPDAVLVLEPTDPGAGDDGTDHTATLYFRPLAGRDTEQFYADSRSGEFWI GPRPTLAGLAARTGLRTAGLEELESAVTKNVAADGTTVRLLAETDQDVDALLAAVRTEAG VDLAAAAEADAQTAEFLSELRLVKDAWEVERMRASVAATIAGFEDVVRALPRAVGHDRGE RVVEGAFFARARLEGNDLGYDTIAASGNNATILHWIRNTGAVRPGELLLLDAGVEDDSLY TADITRTLPVSGTFTDVQRRIYQAVLDAADAAFAIVRPGIRFRELHAEAMRVLVDRLDGW GLLPVSAEVALSDEGQHHRRWMPHGTSHHLGLDVHDCAQAKRELYLDGVLEPGMVFTIEP GLYFKEEDLAVPEEYRGIGVRLEDDILVTEDGAENLSAALPRTPDEIEAWMARLQA >gi|289558239|gb|ADCD01000026.1| GENE 4 3049 - 4854 1407 601 aa, chain + ## HITS:1 COG:Cgl2847 KEGG:ns NR:ns ## COG: Cgl2847 COG0469 # Protein_GI_number: 19554097 # Func_class: G Carbohydrate transport and metabolism # Function: Pyruvate kinase # Organism: Corynebacterium glutamicum # 4 599 11 617 619 384 41.0 1e-106 MGIDLTTELTALRDRLLSAEAEHADLISRVRDRHRASARNLVHYVALRGTDLRPLQEALS DAGLSSLGRMEAGVLGHVDAVLAAARALDGDPAPAPEDDALTSAEGRAILARNAASLLGP ARGDRDARIMVTMPSEAATDPELVARIAEAGMDLARVNCAHDDEQAWAAMIAAVRRCAGA GRPAPLVAMDLAGPKVRTGPIEPGPRVVKVKPARDPSGTVTEPSRVWLTAGTHDAVAAAD GPDGAVVVPLAAPEGKTLAALQRGDEIELTDARGAHRRLEVERVDGEGVLVRADKTVYWA TGTALTTPHGPLEVGPLPPLEQSMRVHEGEQIVLTRSLEPVPAVDTPPYRIGLTLAQAFA DAEVGDRVSLDDGRIGARITAVSDDEITLEVTQAGPRGAKLKAEKGVNFPDTHLDIPALT DEDLAHIPFAARHADMVNMSFVRSAEDVAQLIDALEAEAAPDVDITLKIETVEAFRQLPR MLLEAMRWRDVGVMIARGDLAVEAGFARMAELQEEILWLCEAAHVPAIWATQVLESLAKT GLPSRAEITDAAMAQRAEAAMLNKGPYIDRAVTVLGDILGRMHGHASKKRDMLRRLESWS L >gi|289558239|gb|ADCD01000026.1| GENE 5 4861 - 5637 592 258 aa, chain - ## HITS:1 COG:no KEGG:Mlut_15320 NR:ns ## KEGG: Mlut_15320 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 258 1 258 258 366 96.0 1e-100 MSFMMSSPQPGAEQGLPRGELLATYATYAQAREQVDRLAATDFPVSAVSIVGKDLRVVER VRGRLNYAQVALSAGVRGVFFGGLIGVFLYLLAPEAGPGQILTSMLLGLAVWLIFGVIGF AMRRGQHGFASSQAVVPTAFDLVVAFDHAARARQELGLGGAAAPMPPAAPQPAPAPAAEE AGDGSVQATPAAAPSSGGSHAAPAPGGAEAPARPGPEADPAPTGLDRSYGVTLPPEEVAK LIEARGGHPPRPQDEPRG >gi|289558239|gb|ADCD01000026.1| GENE 6 5730 - 6998 907 422 aa, chain + ## HITS:1 COG:MT1270 KEGG:ns NR:ns ## COG: MT1270 COG2239 # Protein_GI_number: 15840677 # Func_class: P Inorganic ion transport and metabolism # Function: Mg/Co/Ni transporter MgtE (contains CBS domain) # Organism: Mycobacterium tuberculosis CDC1551 # 2 421 3 432 435 304 42.0 2e-82 MSSPKIFVARLLGLDVFDPLGDRLGRLRDVVVLDRGPAAAPFATGLVIEVPGKKRVFVPM TRVTSMDSGQIITTGLINLRRFSRRGAEQTVAADLFDRKVRLSDGSGEAFLEDIGLEQQR NGDWLVSDLYVRRIVGRGPFGRAQRGEHLLLNWDEARWTAQADPQGATSFLAAHEDLKPA DLADMLHDMSEKRRVEVARELQDERLADVLQELPDDDQVQILSQLDIDRAADVLEEMDPD DAADLLHELPDSQQELLLERMEPEDAEDVRRLLEYEEGTAGSLMTPVPVILPPEATVAEA MATIRQQEISPALASLVIVARPPLETPTGRFLGVVHFQRLLRYPPPEAIGNIMDKDLEPV SDLAPIAHVTRELATYNLTCIPVVNEQDRVVGAVSVDDLLDHILPDDWRAMDLDDAETRP AT >gi|289558239|gb|ADCD01000026.1| GENE 7 7039 - 7845 719 268 aa, chain + ## HITS:1 COG:Cgl1100 KEGG:ns NR:ns ## COG: Cgl1100 COG4420 # Protein_GI_number: 19552350 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Corynebacterium glutamicum # 16 169 9 159 193 118 46.0 1e-26 MTQTARDLRPGRGTGLDTPLSASGRRVPRLAPNPDAFGEATEGIARFMGTPQFLVWMTLF CAAWLGWNTFGPMEWRFDSAELGFTALTLMLSLQASYAAPLLLLAQNRQDDRDKVALRED RDRAERNLADTEFLTREIAGLRLAVQEVATRDFVRGELRGVQDDLKDDLREALRAELREE IREEIRAELRAGLPGAEAQPRKNKKTKGRGRDARRGDAGAEPTTTTLATLAAQEAREAQE AREAREAGGSGPAAGPADGAGPVDGGGR >gi|289558239|gb|ADCD01000026.1| GENE 8 7842 - 8990 813 382 aa, chain + ## HITS:1 COG:ML1080 KEGG:ns NR:ns ## COG: ML1080 COG0489 # Protein_GI_number: 15827530 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Mycobacterium leprae # 14 381 10 380 383 371 57.0 1e-102 MSALGLPVPEVRTDLERRVLERLATVQDPEIRRPITDLGMVESVVETAPGVVEVAVLLTI AACPLRGTIQTDVAAAVADVPGCGSVDVRVGVMEPERRLALQDALRATRPTNPFGKDTLT RVLAVASGKGGVGKSSVTANLAVALAARGLAVGLIDADVHGYSIPGLLGVSATPTKLDRM ILPPVVRDVKVISIGMFLDADRPVAWRGPMLHRALEQFVTDVHWGDLDVLLVDLPPGTGD IAISTAQLLPASELLVVTTPQHAAAQVAARAGQLAEQTGQTVAGVVENMGPMTLPDGTVL DVFGTGGGAEVAERLSGVLDTQVPLLGTVPLDPALRAGGDAGEPVVVSAPESPAGRALTQ IAQRVAVRPRGLAGRRLPVTPR >gi|289558239|gb|ADCD01000026.1| GENE 9 9039 - 9536 374 165 aa, chain - ## HITS:1 COG:no KEGG:Mlut_15360 NR:ns ## KEGG: Mlut_15360 # Name: not_defined # Def: twin arginine-targeting protein translocase TatB # Organism: M.luteus # Pathway: Protein export [PATH:mlu03060]; Bacterial secretion system [PATH:mlu03070] # 1 165 39 202 202 203 90.0 2e-51 MRDKAEGAKAQFKEETGTDFDEVDWRKYDPRQYDPRRIIRDALREPAGGSSTPASRAAQA TGISAEDVHGGLTRQDLTDMDPRTLFRRPAGAGSTASADSGAAAAQTRSTTPGAGAAAVG GAAAALMASGRADALVEERPAAVETEPDPLELLGLAPAPFDVDAT >gi|289558239|gb|ADCD01000026.1| GENE 10 9711 - 10583 573 290 aa, chain - ## HITS:1 COG:no KEGG:Mlut_15370 NR:ns ## KEGG: Mlut_15370 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 290 1 290 290 452 96.0 1e-126 MGRRHTQRHMDAYLEGALPAASRARIARHLDRCPECSATVQARARVLDAARTVHQRPAGA VVAPVLRARGVSGRLVVGLLTFAVLLGGLFTAVWVAGAPRTTAVRTTPTPTDAVALPAAG TASTDRRGTVAELRGQGWTVPSLVGAGLEPLTVDTAQTAEDVEVVVGWGRDEPTVTVREC RPRIVGAAPEGCASTAPLSTGAQERRLAGGGVYRIVPAGEQDGWTAELTTPQAAYRVEAT LPDERADAVLTHLLVSERARVLELGGGDAVEERLERGLERIADAVPRLRG >gi|289558239|gb|ADCD01000026.1| GENE 11 10780 - 11428 390 216 aa, chain + ## HITS:1 COG:MT1258 KEGG:ns NR:ns ## COG: MT1258 COG4122 # Protein_GI_number: 15840664 # Func_class: R General function prediction only # Function: Predicted O-methyltransferase # Organism: Mycobacterium tuberculosis CDC1551 # 5 215 4 214 215 140 44.0 1e-33 MSALQPQPTDKHASWAWSESRATEDDVVLRARERAAELDVPPVSEGTAALLTVLAATRAP AAVVEVGTGAGVSGLALMRGLPERTVLTTVDPDAEAQRAAREAFSEARLPTSRTRMITGR SRLVLPRLTSGAYEMVLVDGDPAARQFDVEQAARMLAPGGVLVVVDALDGDRVPRPAVRD ESTVSARAVDSLIREDEHWLSAVVPSGTGVLIAVRR Prediction of potential genes in microbial genomes Time: Thu May 26 07:06:31 2011 Seq name: gi|289558201|gb|ADCD01000027.1| Micrococcus luteus SK58 ctg1119142780345, whole genome shotgun sequence Length of sequence - 40643 bp Number of predicted genes - 36, with homology - 35 Number of transcription units - 16, operones - 8 average op.length - 3.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 8/0.000 + CDS 184 - 1749 1317 ## COG0031 Cysteine synthase 2 1 Op 2 . + CDS 1811 - 3070 1185 ## COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases 3 2 Tu 1 . + CDS 3332 - 4345 857 ## COG1228 Imidazolonepropionase and related amidohydrolases 4 3 Tu 1 . - CDS 4462 - 5013 310 ## Mlut_17570 hypothetical protein 5 4 Tu 1 . + CDS 5323 - 7470 1962 ## COG0513 Superfamily II DNA and RNA helicases + Term 7488 - 7525 0.7 + TRNA 7558 - 7629 71.7 # Thr GGT 0 0 + TRNA 7690 - 7763 84.3 # Met CAT 0 0 + Prom 7689 - 7748 75.7 6 5 Op 1 . + CDS 7853 - 8146 241 ## Mlut_17530 hypothetical protein 7 5 Op 2 . + CDS 8187 - 8636 209 ## Mlut_17520 hypothetical protein 8 5 Op 3 . + CDS 8636 - 9127 472 ## COG2030 Acyl dehydratase 9 5 Op 4 . + CDS 9124 - 10323 845 ## COG0812 UDP-N-acetylmuramate dehydrogenase - Term 10442 - 10489 2.1 10 6 Op 1 . - CDS 10501 - 11673 1183 ## COG0136 Aspartate-semialdehyde dehydrogenase 11 6 Op 2 . - CDS 11684 - 11914 200 ## Mlut_17480 hypothetical protein 12 6 Op 3 16/0.000 - CDS 11916 - 12437 420 ## COG0262 Dihydrofolate reductase 13 6 Op 4 . - CDS 12499 - 13278 704 ## COG0207 Thymidylate synthase 14 7 Op 1 . - CDS 13453 - 13809 435 ## Mlut_17450 predicted acetyltransferase 15 7 Op 2 . - CDS 13885 - 14895 784 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 16 8 Tu 1 . - CDS 15033 - 15986 810 ## COG0456 Acetyltransferases 17 9 Tu 1 . + CDS 16100 - 16894 433 ## Mlut_17420 hypothetical protein 18 10 Op 1 . + CDS 17082 - 17762 517 ## Mlut_17400 protein of unknown function (DUF1794) 19 10 Op 2 . + CDS 17759 - 18955 763 ## COG0354 Predicted aminomethyltransferase related to GcvT 20 11 Op 1 . - CDS 18969 - 19694 329 ## Mlut_17380 hypothetical protein 21 11 Op 2 . - CDS 19718 - 20749 960 ## COG0205 6-phosphofructokinase 22 11 Op 3 . - CDS 20838 - 23252 1318 ## Mlut_17360 putative stress-responsive transcriptional regulator 23 12 Tu 1 . + CDS 23255 - 23953 573 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 24 13 Tu 1 . - CDS 24002 - 25210 1180 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase - Prom 25399 - 25458 77.6 + TRNA 25384 - 25456 77.1 # Trp CCA 0 0 + Prom 25383 - 25442 76.5 25 14 Op 1 . + CDS 25537 - 25788 220 ## Mlut_17310 protein translocase subunit SecE/sec61 gamma 26 14 Op 2 45/0.000 + CDS 25941 - 26777 773 ## COG0250 Transcription antiterminator 27 14 Op 3 55/0.000 + CDS 26910 - 27341 719 ## PROTEIN SUPPORTED gi|239918212|ref|YP_002957770.1| LSU ribosomal protein L11P 28 14 Op 4 . + CDS 27419 - 28126 1159 ## PROTEIN SUPPORTED gi|239918211|ref|YP_002957769.1| LSU ribosomal protein L1P 29 15 Tu 1 . - CDS 28248 - 28598 110 ## 30 16 Op 1 47/0.000 + CDS 28471 - 28992 835 ## PROTEIN SUPPORTED gi|239918210|ref|YP_002957768.1| LSU ribosomal protein L10P 31 16 Op 2 28/0.000 + CDS 29062 - 29448 594 ## PROTEIN SUPPORTED gi|239918209|ref|YP_002957767.1| LSU ribosomal protein L12P + Prom 29523 - 29582 1.7 32 16 Op 3 58/0.000 + CDS 29629 - 33240 874 ## PROTEIN SUPPORTED gi|163796927|ref|ZP_02190884.1| 30S ribosomal protein S12 33 16 Op 4 5/0.000 + CDS 33323 - 37219 3790 ## COG0086 DNA-directed RNA polymerase, beta' subunit/160 kD subunit + Prom 37273 - 37332 1.8 34 16 Op 5 56/0.000 + CDS 37529 - 37903 633 ## PROTEIN SUPPORTED gi|239918206|ref|YP_002957764.1| SSU ribosomal protein S12P 35 16 Op 6 51/0.000 + CDS 37903 - 38373 795 ## PROTEIN SUPPORTED gi|239918205|ref|YP_002957763.1| SSU ribosomal protein S7P 36 16 Op 7 . + CDS 38543 - 40606 2021 ## COG0480 Translation elongation factors (GTPases) Predicted protein(s) >gi|289558201|gb|ADCD01000027.1| GENE 1 184 - 1749 1317 521 aa, chain + ## HITS:1 COG:MT1108_1 KEGG:ns NR:ns ## COG: MT1108_1 COG0031 # Protein_GI_number: 15840513 # Func_class: E Amino acid transport and metabolism # Function: Cysteine synthase # Organism: Mycobacterium tuberculosis CDC1551 # 1 320 1 316 334 379 66.0 1e-104 MQYAENVLELIGRTPLVQLHSVTEGIEATVLVKVEYLNPGGSVKDRIALKMIEEAEREGL LGPGGTVVEPTSGNTGVGLALVSQLKGYRTVFVTPDKVGQEKRDVLSAYGAELVVTPTAV DPTSEESYYGVADRLVREIPGAYQPNQFFNPAAPASHYETTGPEIWEDTAGRVTHVVMGA GTGGTITGTGRYLKEVSADRPSGPVRVIGADPSGSVYSGGAGRPYFVEGVGEDMWVDNYD PAVPDEVIAVEDADALAMTRRLAAEEGLLVGGSSGLAVVAGLRAARELGPEDVMVIVLPD SGRGYLAKIFNDPWMDERGFDYDVRETVLPAWARGRTRSAVPQTDDDGATGAAGGAGTPV EALEHADAEPATRAGAPAEADRWSATAGELLAEKADLFPGSVPTLVTAAPTTSVADAVAT MNRYGVDALPVVLEPRHDLRIGEVRGTVSAAALADALAAGRATAQTPVADVMGPVLPSLG ARTPLRAVARRLAQDPVLLVLEAGRVQGVVTLHDVLAHVTA >gi|289558201|gb|ADCD01000027.1| GENE 2 1811 - 3070 1185 419 aa, chain + ## HITS:1 COG:Cgl2392 KEGG:ns NR:ns ## COG: Cgl2392 COG0626 # Protein_GI_number: 19553642 # Func_class: E Amino acid transport and metabolism # Function: Cystathionine beta-lyases/cystathionine gamma-synthases # Organism: Corynebacterium glutamicum # 26 419 5 386 386 391 52.0 1e-108 MTEQNVHEDPHATTPDTGAEDAPAHPRGGGFGTRAVHAGQHLDEVFGAVVPPIHLSSTYA PTAVGELRRGYDYGRGTNPTRDALQEQLAALEAGVDESGAPRATGLTFASGLAAETALIM GAGRPGMTIVLGNDVYGGSYRLISRVLAPWGVEHVVVDMGDAEQVAAAVERAAAAGPVMV WLETPSNPMMKISDVAAVAEAAHAHGALLVVDNTFATPYLQSPIALGADVVVHSTTKYIG GHSDVIGGALVIPDAALAEQVKFQQFAAGAVNGPLDAYLTTRGLKTLGVRMDRHQANAQA VAEWLTGRAEVSQVLYPGLPDHPGHELAQRQMRGFGGMVSMRLAGGAAAARRVAESTRLF QLAESLGGIESLMNYPAEMTHASVAGTELAVPDDLLRLSVGIEDADDLVADLERALGSL >gi|289558201|gb|ADCD01000027.1| GENE 3 3332 - 4345 857 337 aa, chain + ## HITS:1 COG:TM1723 KEGG:ns NR:ns ## COG: TM1723 COG1228 # Protein_GI_number: 15644470 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Imidazolonepropionase and related amidohydrolases # Organism: Thermotoga maritima # 11 317 76 383 386 298 46.0 1e-80 MHAEGEVGATADVNEMTDPVMAGVRAIDAVDPNEPGWRDALAGGVTTVNVNPGSGNPIGG QAVALHTHGRTVDEMVLRSPSGVKSALGENPKNVYKEKGRTPSTRLGTALVIRKAFMEAQ GYMARRAEAEREGKPFTRDPHLDALALVLERTIPWRQHCHRTDDVATALRLADEFGYDLV LDHGTEAHPLADQLAARGVPVLIGPLFTTKSKPELRGRSMRNPGRLARAGVEISIITDHP VVPIDFLVYQAALSVKEGLDRETALRAISLHPARVLGLDDRIGSLEVGKDADLVLWSGDP LDVMQRALRVWIGGRQVMEYDLATARPVVASARPVED >gi|289558201|gb|ADCD01000027.1| GENE 4 4462 - 5013 310 183 aa, chain - ## HITS:1 COG:no KEGG:Mlut_17570 NR:ns ## KEGG: Mlut_17570 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 178 1 178 209 249 98.0 4e-65 MPQNSEDRPLARGLGRAAGRAAQSFRENQRADDARLRAERARLTAEDEERLERRRADRER DLAARDAAESDAGLVHPLLKVARLYWLAVTVVLIGIAGAFFWNGARAQDSGEPVIDPLTG MESVGVLGGATGQFTMGTAVALLAAASLWGWIGLLRRRRSAIGTLTFIAVLLAAPAFLGP TAC >gi|289558201|gb|ADCD01000027.1| GENE 5 5323 - 7470 1962 715 aa, chain + ## HITS:1 COG:Cgl1130 KEGG:ns NR:ns ## COG: Cgl1130 COG0513 # Protein_GI_number: 19552380 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Corynebacterium glutamicum # 32 617 86 661 732 516 53.0 1e-146 MSDILDPQTTAEAAPELAEAQQEATGTVPQVDAAEPAAPEAPAEPAGPTFLDLGLDARVL AAVEELGYTRPSPIQEATIPLLLDGRDVVGLAQTGTGKTGAFALPALSRLAETTDVNGRA DTPQVLVLAPTRELALQVADAFDSYAKHLDDVSVLAVYGGSPYGPQLAGLRRGAQVVVGT PGRVIDHLERGSLDLSDLQTLVLDEADEMLRMGFAEEVDRILASTPDTKQTALFSATMPP AIRRISAQYLNAPEEVAVARQSTTSATIRQRYLQVGHQWKFEALSRILETEEHDGVIAFV RTRAGTEELAQKLTRAGFKAVAISGDIAQKQREKTVEDLKAGRVDILVATDVAARGLDVE RISHVVNYDIPQDAESYVHRIGRTGRAGRQGDAVLFMTPRERFLLKQIERTTRQQVEEMA VPSVADVNAARKRRFADGITRTLERASEEELAVFGEIVAAYVDEHQAEPSRVAAALGMMA QGGRPLLAREQEIPFGGARGRKDRDGGREGGRDGGRERGTSDGRGSRGPAREPAAGNATY WIAVGHQDRVRPGNIVGALANEVGLPASAIGAIDLRGNHSLVELPADLTSAQLEAAANAE INGRRLGLRKDTGRPTRAERDGEHRGGFRKDRGERGGFRGDRDGGQRGGFRKDRDDRGDR GGFRKDRDDRGSREDRGGFRKDRDDRGFRGDRGGRPGGRKPRWGAQERSDRGARR >gi|289558201|gb|ADCD01000027.1| GENE 6 7853 - 8146 241 97 aa, chain + ## HITS:1 COG:no KEGG:Mlut_17530 NR:ns ## KEGG: Mlut_17530 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 97 1 97 97 140 97.0 1e-32 MSTRRPAHQPARGTAAPRGFVSPWEHGSRLYRTLVLTGSALFLVGIVLAVVGGTTGRLAV SGTALGVLGAGVAVHLSAQLVRFRQAARRQRERRPGR >gi|289558201|gb|ADCD01000027.1| GENE 7 8187 - 8636 209 149 aa, chain + ## HITS:1 COG:no KEGG:Mlut_17520 NR:ns ## KEGG: Mlut_17520 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 3 149 1 147 147 230 98.0 9e-60 MSVNPDVAGRSYPPAPPFQVGREAVRGFAEAVQAQHPAHHDVAAARALGHADLVAPPTFA VVIAQRAEAAVVADPELGIDFSRVVHADERFVHHRPLVAGDEVVATVRVEAVKSLGGNRM VTTVTEIADLDGAPVSTVTSTLLVRGEES >gi|289558201|gb|ADCD01000027.1| GENE 8 8636 - 9127 472 163 aa, chain + ## HITS:1 COG:ML1909 KEGG:ns NR:ns ## COG: ML1909 COG2030 # Protein_GI_number: 15828023 # Func_class: I Lipid transport and metabolism # Function: Acyl dehydratase # Organism: Mycobacterium leprae # 7 156 6 142 142 94 42.0 8e-20 MSTAPRLSDLARGEVVGTRTVTFTRADLVAYAGASGDRNPIHWSPTFAEHVGLPGVIAHG MLTMGAAVQLVSDWAGDPGAVVDYQTRFTGMVPVADTTGRTDDDGAPVPGATLEVVGTVG AVDEAAGTVRIDLNVTNPDAAKPRVLTKAQAVVRLADPAGETA >gi|289558201|gb|ADCD01000027.1| GENE 9 9124 - 10323 845 399 aa, chain + ## HITS:1 COG:ML2447 KEGG:ns NR:ns ## COG: ML2447 COG0812 # Protein_GI_number: 15828323 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate dehydrogenase # Organism: Mycobacterium leprae # 5 399 21 367 367 233 41.0 5e-61 MSERLADHTTTRVGGPARAWVTARTEAEAIEAVRAADAAGEPVFVLGGGSNTLMADAGFP GTVVRLAFEGIRVLDGPVPGEGETPPAGDGARPAGHEGEAVVVRVAAGHPWDDAVAWTVA HGLGGIEALSGIPGSAGATPVQNVGAYGADVSQVLVALRAWDREAGDVVELTPADLRFGY RDSVIKRSMLETGAPSPRWIVLSIDLRLRRASSDAEPTAPVRYGQLAAALDVEEGAHAPL EVVRREVLALRAAKGMVSDPADPDTWSTGSYFTNPIVPASMRASLPEGAPAFAAGEAEDG TPLVKLSAAWLIDRAGFAKGFGLPEVAPREGGPDGRGADGTGLAGGRASVSTKHTLAMTN RGDATTEDVLTIARTVRDGVRERFGVELHPEPMIIGTSL >gi|289558201|gb|ADCD01000027.1| GENE 10 10501 - 11673 1183 390 aa, chain - ## HITS:1 COG:YPO3949 KEGG:ns NR:ns ## COG: YPO3949 COG0136 # Protein_GI_number: 16124077 # Func_class: E Amino acid transport and metabolism # Function: Aspartate-semialdehyde dehydrogenase # Organism: Yersinia pestis # 20 385 4 365 367 469 65.0 1e-132 MTSAAPASVNAPDAAGVPTVGLVGWRGMVGSVLLQRMVEEGDFARVHPVFFSTSNAGGPA PGLEGMAGDPGVLQDAYDVDALTALPVILTAQGGDYTQAVYPKLRAAGWDGIWIDAASTL RMADTSVIALDPVNRDVIDAALANGTKDFIGGNCTVSCMLMGLGGLFKAGLVEWGTAMTY QAASGGGARHMRELLTQYAELGGAVRAELADPASAILEIDRKVIELQRGGLDSTQFGVPL GGSLIPWIDADLGDGVSREERKAYDETNKVLGLTGADRIPFDSLCVRIGAMRSHSQALTL KLTQDVPLDEVEQIIAADNEWVQVVPNTKEATVTDLTPIAATGTLQIPVGRLRKLNMGPE YLSAFTVGDQLLWGAAEPVRRMLMIATGNL >gi|289558201|gb|ADCD01000027.1| GENE 11 11684 - 11914 200 76 aa, chain - ## HITS:1 COG:no KEGG:Mlut_17480 NR:ns ## KEGG: Mlut_17480 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 76 1 76 76 116 93.0 2e-25 MAPTDSDQRLLSPQAVTFLALVALPVLAFVCAVFGLILVLQGKTIAGLVFLLVLTQVFAV GGLIAWNKRKRAQQDR >gi|289558201|gb|ADCD01000027.1| GENE 12 11916 - 12437 420 173 aa, chain - ## HITS:1 COG:ML1518 KEGG:ns NR:ns ## COG: ML1518 COG0262 # Protein_GI_number: 15827800 # Func_class: H Coenzyme transport and metabolism # Function: Dihydrofolate reductase # Organism: Mycobacterium leprae # 1 172 6 164 165 125 44.0 3e-29 MIWAQTPERVIGRDGTMPWHVPEDLAHFRAHTHGHPVIMGRRTWESFPARFRPLPGRTNI VVSRTLTATEEAGAELRAAGAVVVPDFGAALAAAAEADGCDTVWVIGGATLYEQALDVAS RAEVTVIDADVDGDTHAPPLDARWRRTAVDPAPDAWLDSASGPRHRFERWERD >gi|289558201|gb|ADCD01000027.1| GENE 13 12499 - 13278 704 259 aa, chain - ## HITS:1 COG:RSc0947 KEGG:ns NR:ns ## COG: RSc0947 COG0207 # Protein_GI_number: 17545666 # Func_class: F Nucleotide transport and metabolism # Function: Thymidylate synthase # Organism: Ralstonia solanacearum # 3 259 14 264 264 381 68.0 1e-106 MAHGAVKTDRTGTGTRSVFGRQLRFDLAESFPLITTKRVHFKSVALELLWFLRGDSNVRW LQERGVRIWNEWADEDGELGPVYGVQWRSWPTPDGGHIDQIAKVVEQIRTNPDSRRHIVT AWNPAEVDEMALPPCHALFQFYVSPGQDGAPGRLSCQLYQRSADLFLGVPFNIASYALLT VMVAQQTGLTPGEFVWTGGDVHIYANHEEQVREQLSREPYPYPRLRLRRTPASIFDYDYE DFEVLDYRHHPTITAPIAV >gi|289558201|gb|ADCD01000027.1| GENE 14 13453 - 13809 435 118 aa, chain - ## HITS:1 COG:no KEGG:Mlut_17450 NR:ns ## KEGG: Mlut_17450 # Name: not_defined # Def: predicted acetyltransferase # Organism: M.luteus # Pathway: not_defined # 1 118 1 118 118 207 96.0 1e-52 MENTAAQSQPEKIVHERLTVTRDPDRQRFELRQDGTFIGFLGYDQETVRGEDGEDTVVLR LQHTIIDEQFGRRGFARALVTMVLDRLRAEGDRIVPECSYVEDYLRRYPEYQDMVFHG >gi|289558201|gb|ADCD01000027.1| GENE 15 13885 - 14895 784 336 aa, chain - ## HITS:1 COG:Cgl1286_1 KEGG:ns NR:ns ## COG: Cgl1286_1 COG0494 # Protein_GI_number: 19552536 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Corynebacterium glutamicum # 27 162 64 193 194 103 46.0 4e-22 MPSSHADRVARWSTEDRVSEGPRAEVLAAGMLPWRRVPGGLEVMVIHRPRYDDWSWPKGK LDPGETLPECAVRELREEVGLELRPGIPLCVTEYEVPGKRGARRSKEVWYWAAEVDGQRA LPDGDEVDEVRWVGPDAARRLLTNDSDREPLDLLLRAASRGRLRTVPLLVLRHAKAKPRS SWSRAEQERPLAATGRRQALAVEGLVTAWRPERLVSSPWRRCVETLAPLVKSSRLPLKTK GAFTETTAREKPKKTRKVMAELMGRSRPLVVCTHRPVLPTLFEVVEDAAAGQADRVLRAL PTEDPWLRPGAVLVAHRALDLDGDVVAVEVYDPWDD >gi|289558201|gb|ADCD01000027.1| GENE 16 15033 - 15986 810 317 aa, chain - ## HITS:1 COG:MT0841 KEGG:ns NR:ns ## COG: MT0841 COG0456 # Protein_GI_number: 15840232 # Func_class: R General function prediction only # Function: Acetyltransferases # Organism: Mycobacterium tuberculosis CDC1551 # 24 314 13 308 315 158 42.0 2e-38 MAEHPTPTTSDADETPRVVTPRPEQASAVLDLADRAGAADGHPPLSDQTRVLLARGGQLW WGATQGPDGAIDGAAVLVPEGAAAVLELVVDPAARRTGRGTALADAAAAAVRDLAREDTT SVWAHGMLPGADRLARRHGLEPVRELRRMRLSHAALAALPEVRLADGVALRGFVPGQDEQ AWLDVNAAAFADHPEQGSLTRADLEDRMAEDWFDPDGLLLAAREADGRLLGFHWTKVEPD VGGDGPRVGEVYAVGVSPEAQGLGLGRALTLAGLHRMAEQGVDVVDLYVDADNTAAVALY TSLGFELFAADAQYRRP >gi|289558201|gb|ADCD01000027.1| GENE 17 16100 - 16894 433 264 aa, chain + ## HITS:1 COG:no KEGG:Mlut_17420 NR:ns ## KEGG: Mlut_17420 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 264 6 269 269 291 96.0 2e-77 MALSAAIAALVLGGAALLGPVPAALAAAVVILVIAWGWPRQMGAPARLSLSVTLAVAGAV AVLLMLLWPPPEDGRSGAWTLFEPLAVVVAWSTMASFVVQLVRGTGRPLRLESTVATMGG AFMAVVTACWVAVSRWSDTPAVAGLVITLAVTVAAVSLVGLTPWMQGRPGVLALVVIPLG TVLAWPVSALAGVGARDRPAVMAAALAVAVLVSLTAATAPSSRPRPEDRPVGTTLRPRRA GYALALAPVGAAGVVAHVMVGFLA >gi|289558201|gb|ADCD01000027.1| GENE 18 17082 - 17762 517 226 aa, chain + ## HITS:1 COG:no KEGG:Mlut_17400 NR:ns ## KEGG: Mlut_17400 # Name: not_defined # Def: protein of unknown function (DUF1794) # Organism: M.luteus # Pathway: not_defined # 1 226 1 226 226 410 98.0 1e-113 MATELPYDLTPELAPLSWLIGSWEGQGRLGDGSADTEIFYQRVDFTEHGLPFVEYRAESW LCEADGTLLRPLTVESGFWQVDRERRDGDVGPGMRPADIVPAFRSAEDVERLRAGDEGFG LTATITHPGSLSELYYGRIKGPQLQLATDAILRGSAAGPYHRATRMAGLVNGQLFWRWDV ADAAGAELEAHASAILDRMPSAAEGRLAPGAERPRGAGGRKEGEQS >gi|289558201|gb|ADCD01000027.1| GENE 19 17759 - 18955 763 398 aa, chain + ## HITS:1 COG:ML2203 KEGG:ns NR:ns ## COG: ML2203 COG0354 # Protein_GI_number: 15828181 # Func_class: R General function prediction only # Function: Predicted aminomethyltransferase related to GcvT # Organism: Mycobacterium leprae # 28 397 17 365 373 167 37.0 3e-41 MTASRSPLLDLAVAEPQGPAGGAVEGRGPDSGVAAHYGRPLPEQRALARGRALVDLSHRA VLSVSGPDRLSWLHTLGTQHVETLPPGTSTEILFLDVQGRIEHAAHLLEDGAAAWLVTDR EDGPGLAAWLTSMRFSHDVTLRDHTGAVAVVGATAPVPGWEDRTVWLDPWPRVGAGGWAY TADPDPEAHPGADWAWREYLVTRADLEATARALGTGALAGWSLAGTTAAEALRIEAGRPR RALDVDDRAIPHELDLLRTAVHLEKGCYRGQETVARVHNLGRPPRRLTRLLLDGSVHALP EHGAPVILRPAEDTPEARAAARPVGTVTAAAQHHEAGAVALALLKRTVPVDAELLVREDA PGEDGVAEGGWIAASQEPLVSPDAGQVVGRPRGVGRLR >gi|289558201|gb|ADCD01000027.1| GENE 20 18969 - 19694 329 241 aa, chain - ## HITS:1 COG:no KEGG:Mlut_17380 NR:ns ## KEGG: Mlut_17380 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 241 10 250 250 306 95.0 4e-82 MLALGLARRLGLPDTALLPDDAPAAGAEPRRLEVARQGVAEAEVLALPWATVVAGPAWFT RACRGVPAEALGVESALLRTAVRAAAGEAVRSRGEFTLYAAEEPPPVDASRTVAVSDDPA HVHAVAAQAPADDVAEAGVLSWESSAALVPDDGAGRAIEAPVAAAGYRVTGGVLASLGTL TPPLLRGRGLGRYAVAVAMDRAALEGLLPFAEVPAGHTAAHHVAIAVGLEAAGTRTVLAL D >gi|289558201|gb|ADCD01000027.1| GENE 21 19718 - 20749 960 343 aa, chain - ## HITS:1 COG:Cgl1221 KEGG:ns NR:ns ## COG: Cgl1221 COG0205 # Protein_GI_number: 19552471 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphofructokinase # Organism: Corynebacterium glutamicum # 1 342 4 346 346 290 48.0 3e-78 MRVGMLTSGGDCPGLNAVIRSAVLHGIKSYDMEMVGIRNGWSGLIEKDVEDLPRSRVRGL ARTGGTILGTSRTHPYDAEGGGPENMLRNLRELDIDAVIAIGGEGTLAGANRLAADGLPI VGVPKTIDNDLQGTDYTFGFDTAVQIATDAMDRLRTTGESHHRCMVAEVMGRHVGWIALH SGMAAGAHAILIPEVRTPMSQVAEWVQQVHDRGRSPLVVVAEGFIPEGHDDPLAEAGVEA SGRPRLGGIGEWVTREIEEMTGIETRSTILGHIQRGGAPTATDRVLSTRFGMGAVDLVAQ RRWGQMVAANGTEIISIPMSAALKGLKKVPVSRYDEAKILFGR >gi|289558201|gb|ADCD01000027.1| GENE 22 20838 - 23252 1318 804 aa, chain - ## HITS:1 COG:no KEGG:Mlut_17360 NR:ns ## KEGG: Mlut_17360 # Name: not_defined # Def: putative stress-responsive transcriptional regulator # Organism: M.luteus # Pathway: not_defined # 451 803 1 353 354 500 96.0 1e-139 MLLSGARSRSLGLGQRQVDLGAARAGPDAGGPAGTLHAAEDRLPHAEPVGRDRVQVEAGA AVPDEHLRDGAAVVVLAGLREDLRVAGVPGRVLHGLACRGRERLEPRPRGPAHGHDLHPG PVRVLDRGGVLFERLRQGARAATGVQGEELTQLTLLGAGHPGHRVRVMGAPLDEGEGLQH RVVQVRRDLGALGLHRERGPLRVASAQPGQDVGHGHQRRAGEHRDGGQQGPPQLARTHGA QDDGQHRQQHEGRTEHEADQSSAPPGPGPARQVELHPGQAEADHEDGHRAHERPVDGEAE AVRDGQHAHAEHHGGQQDRPAALAHPLEHLGGATTEGGGVGGGSAVRALLRHEQPEPHVQ GQARAPHQAQQRQGRADAADGHPEMPGEPRGDAGHRAVGPVPHQRRTRGLRGRGRGGHAP ILPRRTVRHIRGGFREFPDGRGPRADEDGDMTSTHDPFTGPGPHVAPDGAAAGETGPDGL DALPGWLRRAVLGWGVRRSPASWVGGVLGGVAERYRIDPLLARGVFVAVCMVSAGLGLLA YAAAWAVLPDADGRVQFGRLRRGEWQDATVAIGVIGAIGALNLLLGAGFTLIAPAVGGPG SLVGLGALAVLVWWLVTRWDGRAQARVAPGRAPDAEQPTHAVPRPAWYVGGGPGERAAEV ADPHGFRPEWIDPATGTWRDHLHSRERRAAARLADEAPRAATAPTGSGSAATAAKPRLGP IAQAAAYAGAVLAALAALGTSLLLGVGPTPTLLAVPMLVAALAVIAPVILGALLSGRRPG TLGPASGILVGATALQVAVLVALG >gi|289558201|gb|ADCD01000027.1| GENE 23 23255 - 23953 573 232 aa, chain + ## HITS:1 COG:Cgl0595 KEGG:ns NR:ns ## COG: Cgl0595 COG2197 # Protein_GI_number: 19551845 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Corynebacterium glutamicum # 11 229 6 227 230 197 54.0 1e-50 MTDPAPRTAVIVDDHAIFRSGLRADLDPDRLAIVGEAGDVDEAVRTVLELAPDVVLLDVH LPGGAGGGGAEVAERVLARRPAQRFLALSVSDAAEDVVAVIRAGARGYITKTASGAEVAD AAVRVADGDAVFSPRLAGFVLDAFRGTAPASPPVPAAATSGAAAPDEDLDRLSAREREVM RLIARGYTYREAGAELFISDRTVETHVSSVLRKLQLSNRHELTRWAARRGYA >gi|289558201|gb|ADCD01000027.1| GENE 24 24002 - 25210 1180 402 aa, chain - ## HITS:1 COG:BS_aspB KEGG:ns NR:ns ## COG: BS_aspB COG0436 # Protein_GI_number: 16079294 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Bacillus subtilis # 7 397 2 386 393 343 44.0 3e-94 MAAPARRVSARLSAIAPSATLAVDARAKELKAAGRPVIGFGAGEPDFPTPDYVVEAAVAA ARDPKNHRYSPAAGLPELREAIAAKTLRDSGVSLEAAQVLVTNGGKQAVYNAFAALLDPQ DEVLVPAPYWTTYPEAIRLAGGVPVEVFAGPEQGYKVTVDQLDGAVTDRTKVLLFVSPSN PTGAVYSPEETAAIGQWARERGLWVVTDEIYEHLTYDGMPFTSIVRAVPELAEQSVILNG VAKTYAMTGWRVGWMAGPLDVVKAATNLQSHATSNVANVSQRAALAAVAGPLDAVAEMKT AFDRRRRAMVEAMNAVPGFHCPTPQGAFYAYVDVREALGKTYRGGVTPTTSAELAAFILD EAEVAVVPGEAFGPSGYLRLSYALGDADLAEGVERIRALLSA >gi|289558201|gb|ADCD01000027.1| GENE 25 25537 - 25788 220 83 aa, chain + ## HITS:1 COG:no KEGG:Mlut_17310 NR:ns ## KEGG: Mlut_17310 # Name: not_defined # Def: protein translocase subunit SecE/sec61 gamma # Organism: M.luteus # Pathway: Protein export [PATH:mlu03060]; Bacterial secretion system [PATH:mlu03070] # 1 83 1 83 83 135 98.0 6e-31 MAANGGGPTPTPSRQRRGLFARIALFLRQVVDELRKVVTPTSEELLRTTGVVLAFVAFMI LLVMGLDWVFGTVAGLLFGAGGL >gi|289558201|gb|ADCD01000027.1| GENE 26 25941 - 26777 773 278 aa, chain + ## HITS:1 COG:ML1906 KEGG:ns NR:ns ## COG: ML1906 COG0250 # Protein_GI_number: 15828020 # Func_class: K Transcription # Function: Transcription antiterminator # Organism: Mycobacterium leprae # 64 276 17 227 228 213 57.0 3e-55 MSEDAVAEETAETAQDAGTPVEDALDAAAGSGDETAEATVQEADLAVAEGEDAPTPVEEQ ADDEPAVDPAEELRTRLRRQPGDWYVVHTYAGYEKRVKTNLEARILTQDMEDSIYEIEVP MEEVVEIKNTTRKIVSRVRIPGYVLVRMDLDDASWGVVRHTPGVTGFVGNDAHHPQPLSL DEVYDMLAPSVIQEAARAAEKAGLAVPASAESGAPAAPAIHVDFEVGESVTVNDGPFETL PATISEIKPEAQQLVVLVSIFERETPVTLSFNQVTKAI >gi|289558201|gb|ADCD01000027.1| GENE 27 26910 - 27341 719 143 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239918212|ref|YP_002957770.1| LSU ribosomal protein L11P [Micrococcus luteus NCTC 2665] # 1 143 1 143 143 281 99 4e-75 MAPKKKVTGLIKLQIQAGAANPAPPIGPALGQHGVNIMEFCKAYNAATESQRGNVIPVEI TVYEDRSFTFVTKTPPAAELIKKAAGVAKGSATPHTAKVGTLTQAQCEEIAQTKMEDLNA NDVQAAAKIIAGTARSMGITVEG >gi|289558201|gb|ADCD01000027.1| GENE 28 27419 - 28126 1159 235 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239918211|ref|YP_002957769.1| LSU ribosomal protein L1P [Micrococcus luteus NCTC 2665] # 1 235 1 235 235 451 98 1e-126 MAQRSKAYKAAKAAIGEDLYSPVEAIRLAKETNPSKTDATVEVALRLSVDPRKADQMVRG SVSLPHGTGKTARVVVFATGDRAEAAHAAGADVVGDDDLIARIAEGWVDFDAAVASPELM GKVGRLGKVLGPRNLMPNPKTGTVTPDVAKAVADIKGGKIDFRVDKHSNLHFIIGKTSFE AKALVENYAAALEEVLRLKPSSSKGRYISKATVATTFGPGVPMDPNVTSVDSSEL >gi|289558201|gb|ADCD01000027.1| GENE 29 28248 - 28598 110 116 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MESRSCLSSVTVRPRYSVRTAALDSRNRSVSSATADSFADVAMALLSMMRGNRHPETRKR PVQMHGARQEHRRSRTRRGDERMRAWLTFTCAGRLRQGDPSVGSARRQGTTTGGLR >gi|289558201|gb|ADCD01000027.1| GENE 30 28471 - 28992 835 173 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239918210|ref|YP_002957768.1| LSU ribosomal protein L10P [Micrococcus luteus NCTC 2665] # 1 173 1 173 173 326 100 2e-88 MATSAKESAVAELTDLFRESSAAVLTEYRGLTVTELKQLRDSIRQDATYAVAKNTLAEIA AKDAGLEGLEAHLSGPTAIAFVTGDPVNVAKALRDFAKDHEKLVLKGGYMDGQPLDEAGI KKLADLESREVLLAKFAGAMKGSMSKAAALFQAPLSKTVRTVEALRAAQGEAA >gi|289558201|gb|ADCD01000027.1| GENE 31 29062 - 29448 594 128 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239918209|ref|YP_002957767.1| LSU ribosomal protein L12P [Micrococcus luteus NCTC 2665] # 1 128 1 129 129 233 97 1e-60 MAKLTTEELLAAFEELTLIELSEFIKAFEEKFDVTAAAPVAVAAAGGAAGGAEAAAEEKD EFDVILEAAGDKKIGVIKEVRALTSLGLKEAKDLVDGAPKPVLEGVNKEAAEKAKEQLEG AGATVTLK >gi|289558201|gb|ADCD01000027.1| GENE 32 29629 - 33240 874 1203 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163796927|ref|ZP_02190884.1| 30S ribosomal protein S12 [alpha proteobacterium BAL199] # 890 1164 1088 1387 1392 341 58 5e-93 MARTVPHGLHIAVGRRRRLAAGERTEPRRPVEGSYVVASSTSNETATVSPRSGASAGRVS FAKISEPLDVPDLLALQTESFDRLIGNERWAARVDAALAADDHSVPVTSGLTDIFEEISP IEDFQGTMSLSFAEPEFADAKMTEEECKDRDATFSAPLYVKAEFMNNTTGEIKQQTVFMG DFPLMTRNGTFIINGTERVVVSQLVRSPGAYFERTPDKTSDKEIFSAKIIPSRGAWFELE VDKRDQVGVRLDRKRKQPVTVLLKAMGWTESRILEEFGHYDSIRATLEKDGTADQDEALL DIYRKLRPGEPAAVDAAQSLLNNLYFTPKRYDLAKVGRYKLNRKLGVDVHLGDPNASVLT EDDIVQMVHFIAALHAGETAIKGTRDGEPVDVRVEIDDIDHFGNRRIRAVGELIENQIRT GLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLAGLTH KRRLSALGPGGLSRDRAGMEVRDVHPSHYGRMCPIETPEGPNIGLIGSLATFGRINSFGF IETPYRRVVDGRVTDTVDYLTADDELAFQIAQANAPVDEDGRFVEELVLCRQRGGDGEPV LSTVDEIDYMDVSPRQMVSAATALIPFLEHDDANRALMGANMQRQAVPLLRSEAPYVGTG MEKYVAVDAGDSVTATQGGVVTEVAADLVTVMNDDGTTTHYPIMKFARSNQGNAYNQRVR VSEGERVEPLSIIADGPATDNGELALGKNLLVAFMPWEGLNYEDAIILSQRMVSEDVLTS IHIEEHEVDARDTKLGAEEITRDIPNVSEEVLSQLDERGIIHIGAEVEAGDILVGRVTPK GETELTPEERLLRAIFGEKSREVRDTSLKVPHGESGTVIGVRIFDRDEDDDLPPGVNQLV RVYVAQKRKITDGDKMAGRHGNKGVISKILPLEDMPFLADGTPVDIVLNPLGVPGRMNLG QVMELHLGWAASRGWDIQGEPEWIKDLPNFPRQSGPVNVATPVFDGAEAYEITGLLGHVN VTRDGDRLMSDSGKAQLFDGRTGEPFPDPVSVGYMYMLKLHHLVDDKIHARSTGPYSMIT QQPLGGKAQFGGQRFGEMEVWALEAYGAAFTLQELLTIKSDDIHGRVKVYEAIVKGENIP EPGVPESFKVLIKEMQSLCLNVEVLSADGQAIEMRDAEDEVYRAAEELGIDLSHAEPSSV EEV >gi|289558201|gb|ADCD01000027.1| GENE 33 33323 - 37219 3790 1298 aa, chain + ## HITS:1 COG:MT0696 KEGG:ns NR:ns ## COG: MT0696 COG0086 # Protein_GI_number: 15840071 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, beta' subunit/160 kD subunit # Organism: Mycobacterium tuberculosis CDC1551 # 5 1297 5 1316 1316 1728 67.0 0 MSTDNSFGLMRIGLATAEDIRRWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC ACGKYKRVRFKGIICERCGVEVTRSKVRRDRMGHIELAAPVTHIWYFKGVPSRLGYLLDL APKDLEKVIYFAAYMITSVDEEARHRDLANLQAEYDQETRVLADQRDSDIAAVAADLEKD LAKLESEGAKAAEKKKARDAADKTMGQIRKRADAELDRKEQVWDRFKNLKVADLEGDEGL YRAMRDKYGQYFEGSMGAEAIQRRLQTFDLEAESEMLRETIKTGKGQRKTRALKRLKVVN AFLTTDNSPEGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL GAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERFR PQVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLVEGKALQLHPLVCSAFNADFDGDQ MAVHLPLSPEAQAEARLLMLSSHNILKPSDGRAVAVPAQDMIIGLNHLTTVRPDEVGAGN LYATVAEAIMAFDGGDLHLNAPARIGVEGFVPSAAVPAPEGWSEGEIALIETTLGKVLFN ELLPDDYPWLDKQATKGTLGQLVNDLAERYPMVVTAQTLDNLKDAGFHWGTWSGVTVAIS DITSDFDKAAIMEGYEEQAQRVQQQYDKGLIADDERRSELIDIWNKATDEVAAAMKDGLP ELNTINRMVSSGARGNWLQVRQIAGIRGLVANPKGEIIPRPIKSSYREGLSVLEYFSATH GARKGLADTALKTANSGYLTRRLVDVSQDVIVREDDCGTERGLSVTIAAPNADGELVAHE QVENSAFARTLAQDVTGEDGTVLASAGADVGDVLIGELVAAGVTEIKVRSVLTCESAVGT CAKCYGRSMATGQLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVASADDITQGLPRIQ ELFEARTPKGVAPISEVAGRVTIEDTEASVRLLLTPDDGSEEIAYPVLRRARILVADGEH VPVGTQLVAGAVDPKQVLRVLGPRAAQRFLVDEVQNVYQSQGVGIHDKHVEVIVRQMLRR ITVIESGDTDLLPGELTDRARFVAANRAAVAEGRQPASGRDELMGITKASLATDSWLSAA SFQETTRVLTQAAMEGKSDPLLGLKENVIIGKLIPAGTGLDRYTKTVVEPTEEAKANLFA SPAGFADFDYPGLDQSLGENDFHAVSLDDYGRGGDFRA >gi|289558201|gb|ADCD01000027.1| GENE 34 37529 - 37903 633 124 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239918206|ref|YP_002957764.1| SSU ribosomal protein S12P [Micrococcus luteus NCTC 2665] # 1 124 1 124 124 248 99 4e-65 MPTIQQLVRKGRSPKVVNTKAPALQGNPMRRGVCTRVYTTTPKKPNSALRKVARVRLNGG IEVTAYIPGEGHNLQEHSIVLVRGGRVKDLPGVRYKIVRGALDTQGVKNRGQARSRYGAK KEKK >gi|289558201|gb|ADCD01000027.1| GENE 35 37903 - 38373 795 156 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239918205|ref|YP_002957763.1| SSU ribosomal protein S7P [Micrococcus luteus NCTC 2665] # 1 156 1 156 156 310 99 7e-84 MPRKGPAPKRPLVVDPVYGSPLVTQLINKVLIDGKKSTAERIVYGALEGARAKNGADPVA TLKKAMDNIKPALEVRSRRVGGATYQVPVEVKPGRSTALALRWLVGFSKARREKTMTERL MNEILDASNGLGGAVKRREDTHKMAEANKAFAHYRW >gi|289558201|gb|ADCD01000027.1| GENE 36 38543 - 40606 2021 687 aa, chain + ## HITS:1 COG:Cgl0488 KEGG:ns NR:ns ## COG: Cgl0488 COG0480 # Protein_GI_number: 19551738 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factors (GTPases) # Organism: Corynebacterium glutamicum # 1 686 18 706 709 1021 73.0 0 MAHIDAGKTTTTERILFYTGVNHKLGETHDGGATTDWMEQEKERGITITSAAVTCFWNDH QINIIDTPGHVDFTVEVERSLRVLDGAVAVFDGKEGVEPQSETVWRQADKYDVPRICFVN KMDKLGADFYFTVDTIVKRLGARPLVMQLPIGAENDFVGVVDLISMKAFVWPGDAKGDVT MGASYETREIPAELQEKAEEYRNQLVEAVAESSEELMEKYLEGEELTVEEIQAGVRQLTV NAEAYPVFCGSAFKNRGVQPMLDAVVAYLPNPLDAGAVKGHAVNDEEQVLEREASKEAPF SALAFKIATHPFFGTLTFIRVYSGRLESGAQILNATKGKKERIGKLFQMHANKENPVDEV VAGHIYAVIGLKDTTTGDTLCDSANPIILESMTFPEPVISVAIEPKTKGDQEKLSTAIQK LVAEDPTFRVNLNEETGQTEIGGMGELHLDVFVDRMKREFKVEANVGKPQVAYRETIKRK VDKVDYTHKKQTGGSGQFAKVQLSFEPLDTAEGEVYEFENAVTGGRVPREYIPSVDAGIQ DAMQFGVLAGYPMVGVKATLLDGAYHDVDSSEMAFKIAGSQAFKEGVRKANPIILEPLMA VEVRTPEEFMGDVIGDLNSRRGQIQSMEDATGVKVVNALVPLSEMFGYIGDLRSKTQGRA VYSMTFHSYAEVPKAVADEIVQKSQGE Prediction of potential genes in microbial genomes Time: Thu May 26 07:07:17 2011 Seq name: gi|289558196|gb|ADCD01000028.1| Micrococcus luteus SK58 ctg1119142780331, whole genome shotgun sequence Length of sequence - 3136 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 3, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 3/0.000 + CDS 66 - 425 193 ## COG0640 Predicted transcriptional regulators 2 1 Op 2 . + CDS 398 - 1024 393 ## COG4300 Predicted permease, cadmium resistance protein - Term 1271 - 1316 17.4 3 2 Tu 1 . - CDS 1329 - 1592 114 ## Ksed_13730 hypothetical protein 4 3 Tu 1 . - CDS 2339 - 3136 626 ## COG2842 Uncharacterized ATPase, putative transposase Predicted protein(s) >gi|289558196|gb|ADCD01000028.1| GENE 1 66 - 425 193 119 aa, chain + ## HITS:1 COG:Cgl0882 KEGG:ns NR:ns ## COG: Cgl0882 COG0640 # Protein_GI_number: 19552132 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Corynebacterium glutamicum # 1 119 1 119 119 166 74.0 9e-42 MMTIASRLDVMNRLGRALADPTRSRIILTLLDHPAYPAELARDLDLTRPNVSNHLACLRD CGIVVSEPEGRRTRYEIADSHLAQALTALVDATLAVDEDAPCIDPACSLPGCDAAGEGA >gi|289558196|gb|ADCD01000028.1| GENE 2 398 - 1024 393 208 aa, chain + ## HITS:1 COG:Cgl0883 KEGG:ns NR:ns ## COG: Cgl0883 COG4300 # Protein_GI_number: 19552133 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted permease, cadmium resistance protein # Organism: Corynebacterium glutamicum # 12 208 3 198 198 240 83.0 1e-63 MRRSWGGRMILTSVLQAMGLFAATNIDDIIVLSLFFARGAGQRGTTARILAGQYLGFAGI LGAAVLVTIGAGAFLPSAAIPYFGLIPLGLGLWAAWQAWRGDDDDDDDEAKVAGKKVGVW TVAGVTLANGGDNIGVYTPVFLSVEPLAVVAYCIVFLALVAVLVALAKFVATRPPIAEVL ERWENILFPIVLIGLGIVILVSGGAFGL >gi|289558196|gb|ADCD01000028.1| GENE 3 1329 - 1592 114 87 aa, chain - ## HITS:1 COG:no KEGG:Ksed_13730 NR:ns ## KEGG: Ksed_13730 # Name: not_defined # Def: hypothetical protein # Organism: K.sedentarius # Pathway: not_defined # 1 85 1 85 87 95 57.0 4e-19 MSARVKISGNLERELQRAVQDTMTTLAKDYQRMLDQLGQQYAGAPVEEIKPVLRTRWSRI SGTISDPELSIYAQHISEGTPITVRTS >gi|289558196|gb|ADCD01000028.1| GENE 4 2339 - 3136 626 265 aa, chain - ## HITS:1 COG:pli0057 KEGG:ns NR:ns ## COG: pli0057 COG2842 # Protein_GI_number: 18450339 # Func_class: R General function prediction only # Function: Uncharacterized ATPase, putative transposase # Organism: Listeria innocua # 123 265 142 284 285 149 47.0 4e-36 APIVIPTTPTGSSRLLVKRYERPIPVLNPGQILSNTWWAGRAGTGNELTNHEPTPDEVNV TKIYAAAHRARTVFYTPEVSATMRALQEDLRHDMIRTERCIEEHLVLHGGHVDHAHGPNP SLLELIIIDESERLTGNAIEWLRDQYDRTGIAMILIGMPGIEKQFTHYPQLYSRLGFAHQ YRPLGHDELLFVLERQWRKLGKTLDPDDFTDAQAIAAVERITRGNFRLLERLLPQIQRVL KINELDVITNDVVEAARSTLVIGTT Prediction of potential genes in microbial genomes Time: Thu May 26 07:07:20 2011 Seq name: gi|289558193|gb|ADCD01000029.1| Micrococcus luteus SK58 ctg1119142776942, whole genome shotgun sequence Length of sequence - 1306 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 19 - 342 282 ## Mlut_12010 hypothetical protein - Term 281 - 309 -0.9 2 2 Tu 1 . - CDS 419 - 1150 715 ## COG0463 Glycosyltransferases involved in cell wall biogenesis Predicted protein(s) >gi|289558193|gb|ADCD01000029.1| GENE 1 19 - 342 282 107 aa, chain + ## HITS:1 COG:no KEGG:Mlut_12010 NR:ns ## KEGG: Mlut_12010 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 107 9 115 115 155 99.0 3e-37 MRLGAQSLESEAGVEPAARQRVEYRTEDGEQVFVTFSVEADVPATWTSKTGKEAFLVSGE KPAETEGKPVRTHWDMLRERRSLEELEETYKIQLNKLRASRGEEVDA >gi|289558193|gb|ADCD01000029.1| GENE 2 419 - 1150 715 243 aa, chain - ## HITS:1 COG:ML1440 KEGG:ns NR:ns ## COG: ML1440 COG0463 # Protein_GI_number: 15827755 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Mycobacterium leprae # 3 238 19 256 277 280 62.0 2e-75 MRVLTIIPTYNEIESLPLTLGRLRDAVPESDVLVVDDASPDGTGDWADARAAEDPSVHVL HRTTKDGLGGAYIAGFRWGLERGYDVLVEMDADGSHQPEQLPRLLEAVRTADLVIGSRRV PGGKMVNWPTSRKMISWAGSLYPRIMLGLNLTDITAGYRAYRADTLRAIDLDAIESKGYG FQVDMTFRTARLGKRIVEVPITFVERELGESKMSGGIIGEAVVNVTRWGLAARWEGLRAH LGL Prediction of potential genes in microbial genomes Time: Thu May 26 07:07:23 2011 Seq name: gi|289558191|gb|ADCD01000030.1| Micrococcus luteus SK58 ctg1119142780223, whole genome shotgun sequence Length of sequence - 1038 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 65 - 898 662 ## COG1968 Uncharacterized bacitracin resistance protein Predicted protein(s) >gi|289558191|gb|ADCD01000030.1| GENE 1 65 - 898 662 277 aa, chain + ## HITS:1 COG:AGc1833 KEGG:ns NR:ns ## COG: AGc1833 COG1968 # Protein_GI_number: 15888341 # Func_class: V Defense mechanisms # Function: Uncharacterized bacitracin resistance protein # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 1 277 3 276 278 312 62.0 4e-85 MTWIEAIILGLVQGLTEFLPISSSAHIRIVGEFLPSGADPGAAFTAITQLGTELAVLIYF WRDITRIIGRWCAAVTGRIPHSDPDARMGWLIIVGSIPIAVLGLLLQDWIDTEFRSLWIT ATMLIVFGVLLALADRLGRQTTPLEKLTVRDGVLYGLAQALALVPGVSRSGGTIAAGLAM GYTRPAAARYAFLLAVPAVFASGLYKLYTSLTDPGTQGPYGMGETLVATGIAFVVGYAVI AWLMRFISTHSFLPFVWYRILLGGVLFALLGAGVISA Prediction of potential genes in microbial genomes Time: Thu May 26 07:07:25 2011 Seq name: gi|289558186|gb|ADCD01000031.1| Micrococcus luteus SK58 ctg1119142780355, whole genome shotgun sequence Length of sequence - 4036 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 4, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 38 - 538 332 ## Mlut_13390 hypothetical protein 2 2 Tu 1 . + CDS 657 - 2114 1577 ## COG0174 Glutamine synthetase 3 3 Tu 1 . + CDS 2270 - 3274 930 ## COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases 4 4 Tu 1 . - CDS 3342 - 4034 589 ## COG1391 Glutamine synthetase adenylyltransferase Predicted protein(s) >gi|289558186|gb|ADCD01000031.1| GENE 1 38 - 538 332 166 aa, chain - ## HITS:1 COG:no KEGG:Mlut_13390 NR:ns ## KEGG: Mlut_13390 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 166 1 166 166 225 83.0 6e-58 MARRAPDPAHEPEPTRRDEPLITRRDLAGWVDGPGGGLAGGRWPGDLLGLPEHGPTSMAT AARRAVALVIDWFLALGVSWLLFDSDAIATLMVFATMHILGITLLATTVGKAVCRTQVVR LGGRTAPVHRVVVRTALLCLVLPAVVVGPDGRGMHDKVAGTVEIRM >gi|289558186|gb|ADCD01000031.1| GENE 2 657 - 2114 1577 485 aa, chain + ## HITS:1 COG:MT2278 KEGG:ns NR:ns ## COG: MT2278 COG0174 # Protein_GI_number: 15841712 # Func_class: E Amino acid transport and metabolism # Function: Glutamine synthetase # Organism: Mycobacterium tuberculosis CDC1551 # 15 485 5 478 478 617 62.0 1e-176 MPPSSRPQERTMFTSPADVLAYIKEEGVEFVDIRFTDLPGMQHHFNVPASTVDEDFFTTG QLFDGSSIRGFAGIAESDMQLIPDVATAFVDPFRVRKTLTMNFSIVNPRTGEPYLRDPRG VAQRAEAYLSSSGIADTAFFAPEAEFFIFEDVRYESSPRGSFYAVDSDEAWWNASREDEG GNLSHKTGLKGGYFPVTPTDKQADLRDEICAVLAEVGLEVERSHHEVAAAGQAEINYRFN TLTHSADDLQKFKYVVKNVAEQFGKTATFMPKPVFGDNGSGMHCHQSLWNGGEPLFFDEK GYANLSDTARWYIGGLLKHASAVLAFTNPTVNSYRRLVPGFEAPVNMVYSQGNRSAGIRI PITGSNPKAKRIEFRAPDASGNPYLAFAAQLMAGLDGIRNRIEPAEPIDKDLYELPAEEA ADIQKAPATLDEALNALEEDHEFLLAGDVFTEELIETWIAYKREVEIAPLALRPNPYEFE LYYSV >gi|289558186|gb|ADCD01000031.1| GENE 3 2270 - 3274 930 334 aa, chain + ## HITS:1 COG:Cgl2258 KEGG:ns NR:ns ## COG: Cgl2258 COG2141 # Protein_GI_number: 19553508 # Func_class: C Energy production and conversion # Function: Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases # Organism: Corynebacterium glutamicum # 10 329 3 322 326 369 57.0 1e-102 MTEHTTPTPLPLSLLDLALVRDGAPMGEAFAESVEQARVAEAAGFRRVWYAEHHNMPSIA SSATAVLIAHVAAHTESIRLGSGGVMLPNHSPLVIAEQFGTLAELHPGRIDLGLGRAPGT DQRTLQALRRDPSAAERFPQDVLELQGYLTGQSRIPGIDAYPGKGTDVPLYILGSSAFGA QLAAQLGLGYAFASHFAPQMLEHAARLYREHFEPSEALAEPHFIAAANVIAADTEEVAER EWQAAQRARIRMMLGRGRTLTDDEVEMLLHSPAGQQVLGMLECTAVGTGPTTAAWLHDFA ARVQADELIITTAAQDAGVRRRTLELLGEHVVRA >gi|289558186|gb|ADCD01000031.1| GENE 4 3342 - 4034 589 230 aa, chain - ## HITS:1 COG:MT2279 KEGG:ns NR:ns ## COG: MT2279 COG1391 # Protein_GI_number: 15841713 # Func_class: O Posttranslational modification, protein turnover, chaperones; T Signal transduction mechanisms # Function: Glutamine synthetase adenylyltransferase # Organism: Mycobacterium tuberculosis CDC1551 # 9 227 772 992 994 202 56.0 3e-52 PPLPGERRLEVDADLRPEGRQGPLVRTLDSYREYYGRWAEVWERQALLRARPLAGDDDLA TDFRRWADGVRYAQDLSAADAREIRRIKARVEAERLPRGADPARHLKLGRGGLSDVEWLV QSLQLKHAGQLEDLRVTGTLPALRALARHDLLPQSEAAVLEEAWLLATRIRAALLLWTGK VSDVLPTNMRDLEAVARLSGVGTAGGELEERYLRVTRLARQVFETRFYGL Prediction of potential genes in microbial genomes Time: Thu May 26 07:07:28 2011 Seq name: gi|289558185|gb|ADCD01000032.1| Micrococcus luteus SK58 ctg1119142780277, whole genome shotgun sequence Length of sequence - 500 bp Number of predicted genes - 1, with homology - 0 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 46 - 252 154 ## - Prom 317 - 376 4.5 Predicted protein(s) >gi|289558185|gb|ADCD01000032.1| GENE 1 46 - 252 154 68 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSKVYYSTPSTLANEGRNKVEKQPTLKAIMYRSVDEYEKLLEAKPHFAEGLTGLMSTLVA HECRSIGF Prediction of potential genes in microbial genomes Time: Thu May 26 07:07:34 2011 Seq name: gi|289558184|gb|ADCD01000033.1| Micrococcus luteus SK58 ctg1119142776945, whole genome shotgun sequence Length of sequence - 1121 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + LSU_RRNA 1 - 700 99.0 # CP000946 [R:4420328..4423307] # 23S ribosomal RNA # Escherichia coli ATCC 8739 # Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia. + 5S_RRNA 782 - 912 99.0 # EU285519 [D:5957..6097] # 5S ribosomal RNA # Edwardsiella ictaluri 93-146 # Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Edwardsiella. 1 1 Tu 1 . - CDS 913 - 1119 63 ## B21_03843 hypothetical protein Predicted protein(s) >gi|289558184|gb|ADCD01000033.1| GENE 1 913 - 1119 63 68 aa, chain - ## HITS:1 COG:no KEGG:B21_03843 NR:ns ## KEGG: B21_03843 # Name: ybl209 # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 14 65 1 52 98 99 100.0 3e-20 KKAIRQDGLLLNLMPGSLWRASCPPPSGPLLRNVQIRSRRICPTQESVHRQTTDKTKGPV FRLSLSLI Prediction of potential genes in microbial genomes Time: Thu May 26 07:08:01 2011 Seq name: gi|289558121|gb|ADCD01000034.1| Micrococcus luteus SK58 ctg1119142780333, whole genome shotgun sequence Length of sequence - 73289 bp Number of predicted genes - 60, with homology - 57 Number of transcription units - 30, operones - 14 average op.length - 3.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 18 - 494 417 ## Mlut_14610 hypothetical protein 2 2 Tu 1 . + CDS 318 - 659 114 ## 3 3 Tu 1 . + CDS 861 - 1109 205 ## Cfla_2396 transcription factor WhiB 4 4 Op 1 . - CDS 1172 - 2680 1040 ## COG3920 Signal transduction histidine kinase 5 4 Op 2 . - CDS 2650 - 4233 890 ## Mlut_14640 chromosome partitioning ATPase 6 4 Op 3 . - CDS 4236 - 4871 422 ## Mlut_14650 SAF domain-containing protein 7 5 Tu 1 . + CDS 5046 - 5333 116 ## Mlut_14660 DNA-binding protein, excisionase family - Term 5268 - 5318 0.1 8 6 Tu 1 . - CDS 5349 - 5906 419 ## Mlut_14670 hypothetical protein 9 7 Op 1 . + CDS 6062 - 6814 375 ## Mlut_14680 hypothetical protein 10 7 Op 2 . + CDS 6865 - 7377 292 ## Mlut_14690 hypothetical protein 11 8 Tu 1 . - CDS 7465 - 10143 2383 ## COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase) 12 9 Tu 1 . + CDS 8917 - 11184 861 ## gi|139438907|ref|ZP_01772367.1| Hypothetical protein COLAER_01371 13 10 Tu 1 . - CDS 10375 - 11046 433 ## PROTEIN SUPPORTED gi|237670455|ref|ZP_04530429.1| sigma 54 modulation protein; SSU ribosomal protein S30P 14 11 Tu 1 . - CDS 11202 - 11999 366 ## Mlut_14720 predicted amidophosphoribosyltransferase 15 12 Op 1 . - CDS 12108 - 13853 1089 ## KRH_08820 lipoprotein LpqB 16 12 Op 2 40/0.000 - CDS 13850 - 15775 1469 ## COG0642 Signal transduction histidine kinase 17 12 Op 3 . - CDS 15780 - 16460 717 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 16534 - 16593 2.3 - Term 16514 - 16550 -1.0 18 13 Op 1 . - CDS 16613 - 17728 828 ## Mlut_14780 hypothetical protein 19 13 Op 2 . - CDS 17721 - 18110 321 ## COG1605 Chorismate mutase 20 13 Op 3 7/0.000 - CDS 18120 - 19238 899 ## COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain 21 13 Op 4 . - CDS 19296 - 20498 784 ## COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes 22 13 Op 5 17/0.000 - CDS 20536 - 21120 446 ## COG0569 K+ transport systems, NAD-binding component 23 13 Op 6 . - CDS 21218 - 22294 989 ## COG0168 Trk-type K+ transport systems, membrane components 24 14 Op 1 . + CDS 22058 - 22591 118 ## 25 14 Op 2 . + CDS 22570 - 23634 669 ## COG0294 Dihydropteroate synthase and related enzymes 26 14 Op 3 . + CDS 23631 - 24422 563 ## COG1985 Pyrimidine reductase, riboflavin biosynthesis 27 14 Op 4 . + CDS 24419 - 25375 508 ## COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain 28 14 Op 5 . + CDS 25414 - 25974 423 ## COG0219 Predicted rRNA methylase (SpoU class) 29 14 Op 6 . + CDS 25982 - 27415 1020 ## Mlut_14900 RNA polymerase sigma factor, sigma-70 family 30 15 Op 1 . - CDS 27478 - 28257 503 ## COG2120 Uncharacterized proteins, LmbE homologs 31 15 Op 2 . - CDS 28254 - 31940 1948 ## COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain 32 16 Op 1 . + CDS 32045 - 32863 864 ## COG1842 Phage shock protein A (IM30), suppresses sigma54-dependent transcription 33 16 Op 2 . + CDS 33042 - 34442 1330 ## COG0786 Na+/glutamate symporter + Term 34533 - 34581 17.4 - TRNA 34573 - 34649 84.0 # Met CAT 0 0 34 17 Tu 1 . - CDS 34826 - 37885 2583 ## COG1615 Uncharacterized conserved protein 35 18 Tu 1 . - CDS 37996 - 39195 652 ## COG3480 Predicted secreted protein containing a PDZ domain 36 19 Tu 1 . + CDS 39263 - 40663 1186 ## COG5282 Uncharacterized conserved protein 37 20 Tu 1 . - CDS 40728 - 41417 383 ## COG1451 Predicted metal-dependent hydrolase 38 21 Tu 1 . + CDS 41416 - 42225 349 ## Mlut_15050 molybdopterin/thiamine biosynthesis dinucleotide-utilizing protein 39 22 Op 1 1/0.250 - CDS 42268 - 44397 1813 ## COG0210 Superfamily I DNA and RNA helicases 40 22 Op 2 . - CDS 44413 - 45402 775 ## COG2816 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding 41 23 Tu 1 . + CDS 45475 - 46581 687 ## COG3173 Predicted aminoglycoside phosphotransferase - Term 46493 - 46535 4.7 42 24 Op 1 5/0.000 - CDS 46556 - 50086 2719 ## COG0210 Superfamily I DNA and RNA helicases 43 24 Op 2 . - CDS 50074 - 53514 2544 ## COG0210 Superfamily I DNA and RNA helicases 44 24 Op 3 . - CDS 53511 - 53750 135 ## Mlut_15110 predicted methylated DNA-protein cysteine methyltransferase 45 25 Op 1 . + CDS 53607 - 53960 57 ## 46 25 Op 2 . + CDS 54059 - 54652 587 ## COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases 47 26 Op 1 7/0.000 - CDS 54681 - 55886 1126 ## COG0001 Glutamate-1-semialdehyde aminotransferase 48 26 Op 2 . - CDS 56003 - 56989 848 ## COG0113 Delta-aminolevulinic acid dehydratase 49 27 Op 1 . - CDS 57109 - 60561 1380 ## ESA_01816 hypothetical protein 50 27 Op 2 . - CDS 60652 - 61491 558 ## Mlut_15180 uroporphyrinogen-III synthase 51 27 Op 3 . - CDS 61493 - 62626 729 ## COG0181 Porphobilinogen deaminase 52 27 Op 4 . - CDS 62631 - 63980 1157 ## COG0276 Protoheme ferro-lyase (ferrochelatase) 53 27 Op 5 2/0.125 - CDS 63980 - 64696 728 ## COG3253 Uncharacterized conserved protein 54 27 Op 6 3/0.125 - CDS 64747 - 66255 1168 ## COG1232 Protoporphyrinogen oxidase 55 27 Op 7 . - CDS 66252 - 67475 903 ## COG0407 Uroporphyrinogen-III decarboxylase 56 28 Op 1 . + CDS 67613 - 68965 975 ## COG0373 Glutamyl-tRNA reductase 57 28 Op 2 . + CDS 68931 - 69647 517 ## COG1309 Transcriptional regulator 58 29 Op 1 . + CDS 69768 - 69992 269 ## Mlut_15260 hypothetical protein 59 29 Op 2 . + CDS 70062 - 71627 1119 ## COG0557 Exoribonuclease R 60 30 Tu 1 . + CDS 71879 - 73289 1368 ## COG0513 Superfamily II DNA and RNA helicases Predicted protein(s) >gi|289558121|gb|ADCD01000034.1| GENE 1 18 - 494 417 158 aa, chain - ## HITS:1 COG:no KEGG:Mlut_14610 NR:ns ## KEGG: Mlut_14610 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 158 1 158 158 195 96.0 4e-49 MAQSRRPDPVAPSESAGADATTLPPRRGRGLPVAVLVVAAALVLEGGALLWLAVDAVVHA ADGVLPAGARVMLIVIYALLALWILATAVALLRGRAWSRGAAVAIQLFGVLLSSWLFSVD AAALGGPLLAVSGVALLTLFTTPVTRHLAPAPEASTDA >gi|289558121|gb|ADCD01000034.1| GENE 2 318 - 659 114 113 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MHHRVHGEPEERAPLEHERRGDHEDGHRQAPSAAGRERRRVGARRLGRGDGVGAAGLCHG ASPAGRLRGRTCPPRYAGRRADHVRDGASVRAWCDEGLAVQRGDAPHSPLVHS >gi|289558121|gb|ADCD01000034.1| GENE 3 861 - 1109 205 82 aa, chain + ## HITS:1 COG:no KEGG:Cfla_2396 NR:ns ## KEGG: Cfla_2396 # Name: not_defined # Def: transcription factor WhiB # Organism: C.flavigena # Pathway: not_defined # 1 81 1 81 82 132 82.0 5e-30 MDWRSKAACLDKDPELFFPVGNTGPALLQIEEAKAVCRSCEVVDTCLKWAMESGQDSGVW GGMSEDERRAMKRRAARARRAS >gi|289558121|gb|ADCD01000034.1| GENE 4 1172 - 2680 1040 502 aa, chain - ## HITS:1 COG:MT3316 KEGG:ns NR:ns ## COG: MT3316 COG3920 # Protein_GI_number: 15842807 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Mycobacterium tuberculosis CDC1551 # 24 501 22 493 501 260 38.0 4e-69 MVSSLAQDPLTSHPDIGDEDRAWLQRLVGDWQLVADLALADLVLWCPVPRRDEAGGFVAL AQVRPFTAPTLFHRDIVGSRARADLRAVVGQTWHGGERAEGAGPVEAPGGTLQVRLWPVV RAGRVIAVVSAHADPNGRPARSVIEENYSRTASTLLDMMQHGRWPAPEEPPGLWAGGTPR VGDGLVVLGPDSVAEFTSPNAVSALRRLGIASTLEGHRLTDVLASTDAARVPTDEGTWAV LTGLRAGRREVQSGGVSLTVRSVPLLGPDGWQGALLLLRDVTELRRQEQRLLTKDATIRE IHHRVKNNLQTVGSLLRMQARRTSSPEAERALRQAMQRVDTIALVHQTLSEEIEDQVPVD GLLQRQFRLAVEVAGDGRPLQVAVTGEFGELPSHVTTPLALVLNELAANAVEHGTAPGGG CVGLHADRESNSAGTVLVVSVTDSGPAAPDGWVPGESPRAGEGSGLGLRIVHSLVEGDLR GTLRWQRSDDGGTRVVLRLPLT >gi|289558121|gb|ADCD01000034.1| GENE 5 2650 - 4233 890 527 aa, chain - ## HITS:1 COG:no KEGG:Mlut_14640 NR:ns ## KEGG: Mlut_14640 # Name: not_defined # Def: chromosome partitioning ATPase # Organism: M.luteus # Pathway: not_defined # 1 527 1 528 528 675 95.0 0 MRIALATTVQPGLDHIGPLERHQTDITVLRRAEDLAELLAIARSGLVDAVLVAGDTESLT AAFLEETARLPRPVGVAALSEVRAERRRLRGMGVPCVRADADAEQIAAVVVESASAAAEG RRPATSHGEDADHALDQAEDLDDLPITLETLGADEVPGLTDPWRDADEPNDAGPGAAPAA ATPGGGPATADEGADPAPSPEEGEPAGPARESLVTVVWGPTGAPGRTTVAVNLAAEHAVA GRNTLLIDLDTYGPAVGVHLGLTEESAGVARAVRRADHGRLGAADLAAAGVRVRVAGADL TVLTGLTRVDRWPELRPAAVTALIAAARERWDRVVVDVGFGLEQDEELSFDVPAPQRNGA TRAALAAADEVIAVGGPDAVALPRLVRGVEELAEMAPAARLRVVVNRLRPAAAGVAPRAQ VEAVWNRYASPATPLEAFLPWDPAAADPALLAGQVLAEAAPNSPLRRALATLAGVPARPA RRGRHRARPPQAIAAASSDTARDATDTGRPARRRTLIPWSVRSRRTP >gi|289558121|gb|ADCD01000034.1| GENE 6 4236 - 4871 422 211 aa, chain - ## HITS:1 COG:no KEGG:Mlut_14650 NR:ns ## KEGG: Mlut_14650 # Name: not_defined # Def: SAF domain-containing protein # Organism: M.luteus # Pathway: not_defined # 1 211 5 215 215 315 98.0 8e-85 MSASAEGGRLRRPRWRDPRLLVGLVLVLASIAGVVALVASSQRTAAYWTAAEDLPPGTPI AAGDLRPVEVNLSEAGERYLSADAPAPEGRMVSGTVRAGELLPAAALVDADPDGRRPVGV ALDEPLPSGVGVGDRVDVWVAMPAEGGRGHADPARLAEALEISEVTAEQSGFGGSGTTRV QLLAPEETLPRIVDAKVKDARVTLVPAHGVR >gi|289558121|gb|ADCD01000034.1| GENE 7 5046 - 5333 116 95 aa, chain + ## HITS:1 COG:no KEGG:Mlut_14660 NR:ns ## KEGG: Mlut_14660 # Name: not_defined # Def: DNA-binding protein, excisionase family # Organism: M.luteus # Pathway: not_defined # 22 94 1 73 74 112 98.0 3e-24 MNGSTSWADRDRPGRLDRRSTVQRFLTLTDVAETLNISGQAARALVRSGELQAIQVGGRG QWRIEVSWLEDYVERQKEVTRARVREWTEADAKAR >gi|289558121|gb|ADCD01000034.1| GENE 8 5349 - 5906 419 185 aa, chain - ## HITS:1 COG:no KEGG:Mlut_14670 NR:ns ## KEGG: Mlut_14670 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 185 1 185 185 268 97.0 6e-71 MRWNGLFDDLEAHWVDLGWQETVAEAAELTRAEWMALSLADRLRGARGRQVRLHLAWGEA VDGVVHTVGQGWVGVHVDGSGSAIVAVDCVAAVEADLTRAALAPELAAAGWGTVLRGIAR TRQPVAVTGRLGAALAEGTVDRVGGDHLDIARHPRDEARRAAAVRGRLIIPFGALGTVRT ALRPA >gi|289558121|gb|ADCD01000034.1| GENE 9 6062 - 6814 375 250 aa, chain + ## HITS:1 COG:no KEGG:Mlut_14680 NR:ns ## KEGG: Mlut_14680 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 250 1 250 250 268 94.0 2e-70 MERTTSPAGPAPTRPVDAADAVGLTVLLLAGPGLLACAAALLQTDPSAPAAELTRVLGLG AGLAGLGLLAWWAVGLLGLALLALGRRAGRPAWARLGRSLTPALLGRVAGAVVGAQLLAA PAAWADTARPVPDASWTVAASPAHATGVEAPAPDAAWTPRPPAPAPPGAGTGRADPDHPT VTVRRGDCLWHLAAAELGPDATPREIDARWRRWYEANRRVIGDDPHLLLPGTVLTSPVFA PHAGVDGPRP >gi|289558121|gb|ADCD01000034.1| GENE 10 6865 - 7377 292 170 aa, chain + ## HITS:1 COG:no KEGG:Mlut_14690 NR:ns ## KEGG: Mlut_14690 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 170 1 170 170 208 98.0 6e-53 MTALATRPRTASARRTADTLLHGPAHSPAVLPRGEEIARRARTEQGREELRRVRSLAAVI AVACVEVETGRRALRDLSAWLSPEVLDKLTRRMELLGAVAPTGPGRRPAAAVPPRASASA PRPVGARVCEVAPGRVEASATVLWEGRARAFALRLERRLSRWKVTSVEIG >gi|289558121|gb|ADCD01000034.1| GENE 11 7465 - 10143 2383 892 aa, chain - ## HITS:1 COG:ML0779 KEGG:ns NR:ns ## COG: ML0779 COG0653 # Protein_GI_number: 15827340 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecA (ATPase, RNA helicase) # Organism: Mycobacterium leprae # 1 862 17 897 940 942 59.0 0 MQATVDAVNLLEDDFRALSDAELRAETDTLRARHADGESLDLLLPEAFAAVREAAGRTLG QRHYDVQLLGGIALHQGNIAEMKTGEGKTLVATAPAYLNALSGRGVHVVTVNDFLASYQA DLMGRVFRFLGMQTGVIVAGQTPAVRREQYAADITYGTNNEFGFDFLRDNMAWSLDELVQ REHHYAIVDEVDSILIDEARTPLIISGPAQGEANRWYGEFARLVRRLEADTDYEVDHKKR TVGILGPGIEKVEDHLGITNLYETQNTTLIQFLNNAVKAKELFKRDKDYVVLDGEVQIVD EHTGRVLKGRRYNEGLHQAIEAKEGVEVKPENQTLATVTLQNYFRGYEKLAGMTGTAETE AAEFTSTYGLGVVVIPPNRERQRVDRNDVVYKNEKVKFDAVVDDIAERHAKGQPVLVGTT SVEKSEYLSTLLAKRGVRHEVLNAKNHAREAAIVAQAGRPGAVTVATNMAGRGTDIMLGG NAEFTAVARMQELGLDAAEDPEAYEARWPEVLAQAEAAVEDAHRAVIEAGGLYVVGTERH DSRRIDNQLRGRSGRQGDPGESRFYLSLTDELMRNFNPGVAQRIMNSPSIPDDMALEFGF VSKAIQNAQAQVEGRNAEQRKNVLKYDDVMNRQREAIYTDRRSILEGEDLQDRVRRFVED AVGNIVDAATEEGQATDWDLDQLWRDLAELYPVGISQEDVLDEVGGRGRLKAEVLKRELV SDALLAYEDREAQVGSEALREAERRVVLATIGRRWQEHLYEMDYLKEGIGLRAMAQREPL VEYQREGYTMFQNMLAAIREDAVRTLFQAQISAAPAPTSLPGVQDARAVTMAPQISVEGI DAPQRPAQLRFTGPSEDGQSAVTRSGTDSGATVAAGTNRRSRRQAERRGRRG >gi|289558121|gb|ADCD01000034.1| GENE 12 8917 - 11184 861 755 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|139438907|ref|ZP_01772367.1| ## NR: gi|139438907|ref|ZP_01772367.1| Hypothetical protein COLAER_01371 [Collinsella aerofaciens ATCC 25986] # 5 388 522 921 955 167 42.0 2e-39 MPLGDVVDDGVELDLLVLVHHVVAVHALSLPVRRDHDDAEAVGRRELGGLRLGGARHAGE LLVATEVVLQGHRGQRLVLGLDLDALLGLDGLVEPLVVAASLEHAARVLVDDLHLAVEDH VVLIPLEQLLGLDRVVQELDERGVLRLVQVRDAEVVLDLLDAGTEDADGALLVVHLVVRV RLEAAHQPGELAVPPVGLALSGAGDDQRGAGLVDEDRVHLVDDRVVVLTLHELVKGPRHV VPEEVEAELVVRAVGDVRGVLLPPYGRGLARHDDARLHAEEAEHAAHEVGLVGGEEVVDR HHVHAPAGQRVEVGRSGGHEGLALAGLHLRDVALVQRDAAEQLDVVVPLAERASRGLPDR GERLRQEQVQRLAVRMPGPERVRLGTQLRIAERPEVVLEEVHGVHRGLHTLEDAVVRDLQ DAVDDRRHWFSAPLRCGRGGTGCPSRSAVARSPGQCTGRARTGRGARPGGEGRRGVSRSW STSAGRSVLPRLVGPLPLGGGDVILREGLVQADHAVAPAPTTVDHGGHAGLGVLEEEEVM THQLHRVHGLVHAHGGRGERLLADAHRGAHLGGVLLGGLLRGQRGTRRRQRRHESDLART AGGAELAVAAVLAAVAHAPQALGQSGGGLVEGCQLVVRVGLSPHDVPRAADRQFHADRLV RVLVVGGLRHADLERVGALGERLEALGALDDVVAEALREPEVAGDVADIHGHGVLLVRLS RVRPREGRCASVSRPQGGGGSEGATSFQPSAGREP >gi|289558121|gb|ADCD01000034.1| GENE 13 10375 - 11046 433 223 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|237670455|ref|ZP_04530429.1| sigma 54 modulation protein; SSU ribosomal protein S30P [Brachybacterium faecium DSM 4810] # 1 204 1 216 219 171 43 1e-41 MDVSYIARNLRLPESFRDHVVERTERLQPLAEGADTLEVRVTKASHHKHSDETVRVELTV RGPRDVVRAEADADDKLAAFDQAATRLTERLRRMRDRRKDRRHGKLGASRGAGEVGFVPP LPPSGAALAAEEAAEQDAPEVGTPVRIRQKAFPATPMSVDEAVDAMELVGHDFFLFQNAE TGVPSVVYRRRGWSYGVIRLDESLPQDHVSASEGERAYQARED >gi|289558121|gb|ADCD01000034.1| GENE 14 11202 - 11999 366 265 aa, chain - ## HITS:1 COG:no KEGG:Mlut_14720 NR:ns ## KEGG: Mlut_14720 # Name: not_defined # Def: predicted amidophosphoribosyltransferase # Organism: M.luteus # Pathway: not_defined # 14 265 14 265 265 298 96.0 2e-79 MPSPPSSPSPASAFGALGRALADLVLPAECAVCAAPGHRLCPACAEGLTAALSLPFRAEQ DAPALPLGPGGAPLPVMAAGRYAEPLAAAVLAFKDHHALHLRGVLGEALCRTVAAARLEP DLPGAPHALLVPVPGGAVGFRRRGYDPLVELTRALPAPWLVSDAVRARLLPRASTLRGGG PSHAGAGAGQRRRRARDWRVVAGRLPARAPVLLVDDVLTTGATLAALAEAVRRAGGHPVG AVVLAAVAPPRDPAEPGPRPGPRVG >gi|289558121|gb|ADCD01000034.1| GENE 15 12108 - 13853 1089 581 aa, chain - ## HITS:1 COG:no KEGG:KRH_08820 NR:ns ## KEGG: KRH_08820 # Name: not_defined # Def: lipoprotein LpqB # Organism: K.rhizophila # Pathway: not_defined # 10 579 38 597 599 250 33.0 1e-64 MTTVDPQPPRPPRVAVVGVIVALVLALSGCTQIPQSSEVRSADPVDGATAAADAPQFHPP GPAESDTAEEAIRGFLLAGTSPQDDYAVAREFLDGPAATQWTPGQRTLVYSAEPRITRGD GAGHYQIQVEVDSEIDEYGLRTIAPPGTTRAWAVTVQERPQGMRITSTENGTLLSQAQFG QLFAPHELAFYDTAKRYVVPDVRWFVNRGTTVTAVTRALLRGPAPYLAGAVDTAFPLRTG TDLAAPTVPVDDDGVAHVDLTQAAAEGADADRRHRMREQLELTLTGLQSVKEVEVTVAGA QLSTSGDDGPAPVQTDAAVGSVQVGIDTATGGLVYVQGTSVTPVGGAPDVTALDPVRPTM SGDRSRFAFVTRDRTAVHVAGTDGSLREVLRGTGLTVPSLDLLGWVWAADRGTTSRIRAV SAQPGGQERIVTATWLRPGERIVDLRLSRSGARAAMLVDDGQRTTLRVSGVVRGSDGVPN ALTEPILLPSSGSEDSVEWAGDTNLLVSAYAEKPEERVVPRIVSIDGTVRELNPLGGLRG ISAGDDGAYYAETEEFVFLLVGSSWRAQELDRGVRDLSFPD >gi|289558121|gb|ADCD01000034.1| GENE 16 13850 - 15775 1469 641 aa, chain - ## HITS:1 COG:ML0774 KEGG:ns NR:ns ## COG: ML0774 COG0642 # Protein_GI_number: 15827335 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Mycobacterium leprae # 44 575 34 553 562 318 38.0 3e-86 MTVSGPGVSAAPAAEAGAEPVEPAAGRPRSWVPGPAWRALRRRWRRSLRLRTAVLAALLS ILAGLVVAAFLTQQITQALFEARYEQVQAEARRGLSQVRETFAQTTATDAQSTDVLVTQT LRALEGDSGTTIRRRYHLAPLPDSESAYVGTISSAGLDPAVIPQELQDAVASGPGVYDAS VALPDPGGGTRPGLVFGAQVVLPPGATYGLYLVYDLSDVQSSLDSVLGVLLVFGVGFLVI NVLVSWWVSRRVTRPVQQAARAAESLSSGNLAVRMPVDGEDEMARLSMSFNRMADSIQDQ IGQLAQLSQMQQRFVSDVSHELRTPLTTVRMAADVLYGSREDFDPVNRRSTELLYHQVDR FQAMLADLLEITRFDAGAATPALEATDMLELARDVVLTSQPLADQIGVPVYVVPMDRDRA DGHVAWVDPRRIERILRNLVNNAIEHAEGRPVDVLVAADEEAVTFAVVDHGIGMSPEQVQ RVFDRFWRADPARKRTTGGSGLGLAIATEDTRLHGGRLEAWGELGEGSTFMVTLPRAPRP AVQGAEAPEPIGRSVLPIPPRYSTADRRYADDLSRPVPQEADADAAGAITDVAAAAAAAP PSARQAEQALTAPTRPVRVVPPADGSAAGDRTGDNGAEEAR >gi|289558121|gb|ADCD01000034.1| GENE 17 15780 - 16460 717 226 aa, chain - ## HITS:1 COG:Cgl0731 KEGG:ns NR:ns ## COG: Cgl0731 COG0745 # Protein_GI_number: 19551981 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Corynebacterium glutamicum # 5 225 4 224 226 290 66.0 1e-78 MGKAKILVVDDDEALAEMIGIVLRNDGFEPAFAADGTSALPAFHRERPDLVLLDLMLPGI DGIEVCRLIRDESDVPIVMLTAKSDTADVVRGLESGADDYVPKPFKPAELVARVRARLRE GEAKPAEVLHIGDLEIDVAGHQVTRAGVGIALTPLEFDLLVALARRPRHVFTREMLLEEV WGYRHQADTRLVNVHVQRLRSKVEPDPENPCVVLTVRGVGYKAGQG >gi|289558121|gb|ADCD01000034.1| GENE 18 16613 - 17728 828 371 aa, chain - ## HITS:1 COG:no KEGG:Mlut_14780 NR:ns ## KEGG: Mlut_14780 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 371 1 371 371 518 96.0 1e-145 MTEAAHDDGATGPVALGGTPWRGTDVAEAQRVTLGELGADHWPVLPELPERGPGADATGR SAALLQELAVDLQPHGWRVSPPGAAGSGRDRRRAVSLWREDAHRWADTAGAEGAVVERLA VRVRGPLSLLAGLWLPGGERVLGDHGARRDVAESYLEGLQDALPRLRRATGAARLGVVVD EPWAGAVLAGTLPTASGYRTVRSLPREEARGLWRAALARLTALPDVARVWLAPGRRAASP GAELPGPAALATLTGESLPRPDAAADAPARAPVSLVVGVGPLDDGADGSPGTREAWEAAA GWADVGRGLTLAPEPGVRPVDVVRTWERLGVDPGRVGDVGLTAAGPHDPAVLRTLRRDAE ELAARLAELRG >gi|289558121|gb|ADCD01000034.1| GENE 19 17721 - 18110 321 129 aa, chain - ## HITS:1 COG:SMc03858 KEGG:ns NR:ns ## COG: SMc03858 COG1605 # Protein_GI_number: 15966994 # Func_class: E Amino acid transport and metabolism # Function: Chorismate mutase # Organism: Sinorhizobium meliloti # 17 116 3 102 111 115 62.0 2e-26 MSPDYDPHASSLPGTADPAVLDELFAIRGSIDNIDASLVYLLAERFKFTQRVGALKARHD LPPSDPGREAAQIARLHRLALEADLEPAFAEKFLNFIIAEVIRHHRALAAEGRPDAEAEP GAGSGDADD >gi|289558121|gb|ADCD01000034.1| GENE 20 18120 - 19238 899 372 aa, chain - ## HITS:1 COG:ML1707 KEGG:ns NR:ns ## COG: ML1707 COG0482 # Protein_GI_number: 15827913 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain # Organism: Mycobacterium leprae # 1 358 7 353 358 347 55.0 2e-95 MSGGVDSAVAAARAVDAGHDVVGVHLALSRMPGTLRTGSRGCCTIEDASDAWRACERLGI PFYTWDFSERFAEDVVDDFVAEYEAGRTPNPCMRCNERIKFAALLERALELGFDAVCTGH YAAVRPGPDGSLELHRAADDAKDQSYVLGVLTSDQLAHCLFPLADTPSKELVRAEAAERG LSVAAKPDSHDICFIPDGDTRGWLAERIDLAPGPIVDAEGQELGTHAGAQAFTVGQRKGL AIGRPAPDGKPRFVLEVRPKENTVVVGGRELLDVDRITGIRPSWAGAPVPEARTGAWFDC ALQFRAHGEIVEARARQRADEAGNPGWEIEPARPLRGVAPGQTAVLYRGTRVLGQATIDT ARNARLSAPADA >gi|289558121|gb|ADCD01000034.1| GENE 21 19296 - 20498 784 400 aa, chain - ## HITS:1 COG:ML1708 KEGG:ns NR:ns ## COG: ML1708 COG1104 # Protein_GI_number: 15827914 # Func_class: E Amino acid transport and metabolism # Function: Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes # Organism: Mycobacterium leprae # 8 392 17 388 410 291 47.0 2e-78 MTTPDRVHLDHAATTTVRPTALAALAEAAALPGNPASLHASGRRAKLRLEEARERIAAAL GTHPTEVILTSGGTEADNLAVQGLYRARRAAAPERTRIVLTGIEHHAVLDVVDWLAAHEG AEPVLVPVDDDGRVDLAAWGAALAAAPERTALATLMWANNEIGTVQPVAEAARLAADHGV PMHTDAVQALGAVPVDFAASGAATLAVSGHKVGAPVGVGALLVRRDVTLEAVVHGGGQER RLRSGTVSVALAAALAAAVAEAVAEQPAEAARLGGLRDEVIAAVDALDGVRLTGPRDLDP ATGQPLPPGTRRLPGNVHITVPGRTADALLFSFDMAGLDTSSGSACTAGVAEPSHVVAAL PGRTEADARATQRFTLGRTTTQAEAAALIDALRTLLGPGV >gi|289558121|gb|ADCD01000034.1| GENE 22 20536 - 21120 446 194 aa, chain - ## HITS:1 COG:lin1022 KEGG:ns NR:ns ## COG: lin1022 COG0569 # Protein_GI_number: 16800091 # Func_class: P Inorganic ion transport and metabolism # Function: K+ transport systems, NAD-binding component # Organism: Listeria innocua # 1 190 22 214 219 125 35.0 3e-29 MESDCHVLGVDADPGAVQALNGRLTHVVRADSTDEEAMRQLSVHEMDHVVVAIGGDLADS ILTASLMRRFGTHQLWAKANDDRHGEILRQLGVEHVVHPERDMGRRVAHLVSTSFQDFVE VEPGLAMVRATPPSRLLGRDLRATGLAGERGMRVVAVRSRGTWLYPPSHYVLEPEDTILL VGPTRDVERFLARD >gi|289558121|gb|ADCD01000034.1| GENE 23 21218 - 22294 989 358 aa, chain - ## HITS:1 COG:BS_yubG KEGG:ns NR:ns ## COG: BS_yubG COG0168 # Protein_GI_number: 16080162 # Func_class: P Inorganic ion transport and metabolism # Function: Trk-type K+ transport systems, membrane components # Organism: Bacillus subtilis # 1 351 92 438 445 213 39.0 4e-55 MTFTSLLGLVILRRLGLTQRLDAAASTRAEGIGDVPRVLRTLILYSTAVEASVALLLSLR FWLGVGMSPGQALWQGVFHAVSAFNNAGFALFSDNLMGFVSDPFICLPIAAAIILGGLGL PVVLTLRRDLRRPERWNLTVRLVLAGTAVLLVGGTLLYLVLEWSNPRTLGGLDPASRVLA AFFQSVTTRTAGFNTLDYGQMHPVTLFGTDVLMFIGGGPAGTASGVKITTASVLLFIVLA EIRGEGAVHAFGRRLSRTTHREAITVIMLSATVIAVATMAIMGLSSFTTDQILFECVSAF GTVGLSTGITAQLPPAAQGILMLLMFVGRIGPATVAGSLALTDRTRHFEYPKERPLIG >gi|289558121|gb|ADCD01000034.1| GENE 24 22058 - 22591 118 177 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MEDPLPQRLARGHPHAQPEAQAQQQRHRGLDGRGVQDQGPQHPRHVPDPLGPGGGRGVEA LGEAEPPEDHQPQQRRERHDAQAPELDEREDHDLAQGCPERLGVHDAEARHRGGAGRRER GLQRGGRAALIRGGQQQCAGARHDDDEEGPDHELGRTDAGPARADPRRRGGCHGRET >gi|289558121|gb|ADCD01000034.1| GENE 25 22570 - 23634 669 354 aa, chain + ## HITS:1 COG:Cgl1087 KEGG:ns NR:ns ## COG: Cgl1087 COG0294 # Protein_GI_number: 19552337 # Func_class: H Coenzyme transport and metabolism # Function: Dihydropteroate synthase and related enzymes # Organism: Corynebacterium glutamicum # 51 332 6 277 277 162 39.0 1e-39 MPREGNIVLPGRTVTVRRRWLNGRVPTPSVPLVHPVHRFAHHEIDFRRRIVTMAVVNRTP DSFYDDGAGAVLEDALAQAHAAADAGAEWVDVGGVPFAPGAELDPAEEAARVVPLIAALR SGDGAGSSEASRRLILSADTFQPAVAEAALAAGADVVNDTTGLFHADLGRVVAAAGAHLV VTHSLAHVRGPRAVVPRPTYDDVVTEVRDHLRRTVDRAVALGVPEERIIVDPGHDLNKNT RHTLEITRRLDEIAALGLPVLAAVSNKDFIGESLDRHRHERLPGSLAAAAACVYGGARIL RMHDADASVSAARMLECVFGWREPARLVHNMGAENPPPDRSTLAEHRAHRGGRA >gi|289558121|gb|ADCD01000034.1| GENE 26 23631 - 24422 563 263 aa, chain + ## HITS:1 COG:ML1340 KEGG:ns NR:ns ## COG: ML1340 COG1985 # Protein_GI_number: 15827698 # Func_class: H Coenzyme transport and metabolism # Function: Pyrimidine reductase, riboflavin biosynthesis # Organism: Mycobacterium leprae # 7 248 27 264 268 137 38.0 2e-32 MRRLTETGPGLDDDALRAALAAPAAEDTGPGAWVRVVFIASADGAATLDGRAGGLGSPAD QRLLSLSRHDADVVLVGAGTIRAEGYEGALLSEEDRRRRAEAGGPADPPVAVVSGSLDLD PESAFFTAAPVRPWILTSRAALAAEPERATALAARADVLAVGQEHVDPQTVVGTLHARGA RVVHCEGGPRLFGSLAAAGLVDEVLLTVAPLLAGPAPGRVLTGEDGPGLPSRLQLVQVLH DDGMLFLRLHHEGHASPGPDPTP >gi|289558121|gb|ADCD01000034.1| GENE 27 24419 - 25375 508 318 aa, chain + ## HITS:1 COG:aq_1735 KEGG:ns NR:ns ## COG: aq_1735 COG0484 # Protein_GI_number: 15606809 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: DnaJ-class molecular chaperone with C-terminal Zn finger domain # Organism: Aquifex aeolicus # 11 80 9 81 364 70 46.0 4e-12 MSAAEEHRTAYEVLGVPRDATAEEVRRAYRRAARAAHPDVGGDPAAFRAVTRAWDLLGDA EARRRYDLSLPGPDVARARDPRARAGSGRARPSGPSGPGERAARPVRYEPPPGEAEADPT VLDLPRSSQRVHGAPRPRGILPDEHRVLRQARTLDVLLRHVADALPAARVLTGLRLDGRW GRHLDVDHAVLCGHRLALIGSVMVPEGTYTWDGSDLRSRGRPVAPPLLGPAMMAWQQALP QVTVGGFVHVMTDRDARHAPVIRRTRGAEAPEAQADLLTAPPAPGIAFAREVALFLGTGT DPDLVDRRALGALVDRLH >gi|289558121|gb|ADCD01000034.1| GENE 28 25414 - 25974 423 186 aa, chain + ## HITS:1 COG:MT3475 KEGG:ns NR:ns ## COG: MT3475 COG0219 # Protein_GI_number: 15842962 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted rRNA methylase (SpoU class) # Organism: Mycobacterium tuberculosis CDC1551 # 27 178 2 153 154 174 61.0 8e-44 MPDSPTPPRPNPHEGADRAPAPGTPGFRILLLTPEIPGNTGNAIRLAALTGAELHLVEPL GFGFEDAHLRRAGLDYHDLAVVTVHPDLDAALAALAPARVLAFTARGSVRHDRVAYRSGD VLLFGRESTGLPEEVLADPRVTETVCLPMQPARRSLNLANAVSIAVYEAWRQHDFAGSAA HPDSLD >gi|289558121|gb|ADCD01000034.1| GENE 29 25982 - 27415 1020 477 aa, chain + ## HITS:1 COG:no KEGG:Mlut_14900 NR:ns ## KEGG: Mlut_14900 # Name: not_defined # Def: RNA polymerase sigma factor, sigma-70 family # Organism: M.luteus # Pathway: not_defined # 1 477 1 476 476 767 94.0 0 MQTPDASEPHADRPDDAGQPALDTLLRRSAEGDRAAFSAFYDATVPWVHGLAEAMFGPGD DAAAATVRTYLTAWEEASEAGLDLSEQDDATHRERQVFTWLEVLAHRVMTSLRRASGPAR AAGVDRSGPAGPAALPEDLVDRVDPDAFEAVRLAWLGGCTDREVADRLGLPADRARTLLR DGVRQVVAARRDLTQDAARPSAPAPTTGPALGAGVREDVDAGRTLELADLAAVHALDTAG HTAAFSAVQRRGGELARWRSRVDGARQAVAWAFRSVTAEPPSALLDEVLRRLPAQDVGMD LIGDESTPAGPPRDRLRWLKVTALVLLAALVLGVGGWTVWSQFTRPGIVHRIDQSKDLFT TSEYPAQDGGTVQAFLSREQNSGYLMISGMPQLSEGQSYQLWLYPSDGTAPASLGTFDAN GFGDPVTFRGLDRFAAMGISVEPSSGSEVPTSEPVVGVDLDPTAQTGPRYGGRPSNN >gi|289558121|gb|ADCD01000034.1| GENE 30 27478 - 28257 503 259 aa, chain - ## HITS:1 COG:PAB1341 KEGG:ns NR:ns ## COG: PAB1341 COG2120 # Protein_GI_number: 14521743 # Func_class: S Function unknown # Function: Uncharacterized proteins, LmbE homologs # Organism: Pyrococcus abyssi # 19 248 33 253 267 89 31.0 8e-18 MTTTLTTPAALAAHHGWRRVLAVGAHPDDLDFGAAATLAGFRAAGLHIELCIVTDGDAGG FDSEGPEAMTARRHAEQRAAAAVVGAAEVHFLGERDGHLEPDHGVRRKLVALMRRVRPDV VLSTHPERDWERMQAAHPDHLACGEAVVRAAYPAVENPYAYPELAAEGLAAFKVRNLLLY AAPAARRNTVVDVTGLAEQKLRALDAHLSQHPDVDAMRRHVLAQMAEHHRHAAGPAAGPG HAEAFHLVTVNGPSTIAGF >gi|289558121|gb|ADCD01000034.1| GENE 31 28254 - 31940 1948 1228 aa, chain - ## HITS:1 COG:Cgl0852 KEGG:ns NR:ns ## COG: Cgl0852 COG0265 # Protein_GI_number: 19552102 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain # Organism: Corynebacterium glutamicum # 741 1223 10 437 441 186 33.0 3e-46 MGRRSEAAAGDVAEPAEVAAAEAAAVEPAEAAAAPAAAVQDRVHQDAAEQCAAEAAAEAA AHSGARACAVHAAHHAGAVAEALDVRAGQLARALGQLGGALRLLEGGHGVGAAEADRRTQ RVVGLREPGPGLRAHRTATGADEVGRAVDLGLGLGDRGGEHLGGLAGLLPSVADAGQRGV ELAVRGLELVQQLQGVRAAGREGSAHRVHGVLHPRHRAGQLGVRPVGHERLGLGDVLLGL GEARLQVAQHGPQGPLGLAHRLRECVHLAERLLGGTHGQRRRGAVLGVPRAPRLRDGGLH ELEPLPGLRRVVRDLGEGGLRVLAVQRGDRRLGLLHPGPRLGQAGVDALQGLGHLVLEVA QGVELLLVRRQGRTHGLAALDDLLEPGALLGLGVRDLVVELVLELERGPHVLLGLVDVLA ERRHGLLPVGRLGEAQLLLRGADGVVRGHELRAGLGAQLLHAELVEGVAADLLGAVPFDR AALRALPAAGHEHAAAHGRGHRARPEDRRQGPAAVGGALGRAPAARGAGRQGAGRIILGP AGPRAVEGAVGGVVEPLHRGGARREPFRRAGVRADLGQLRAHVGARHLVLQVRVPAAVQP IGAVLDRDRQDRVVRSEPALARHVLGQRLGVRAELIHIDDVQPLPGVPAQVLDLLGQPLL IGGREHPGLVHHVHARRHRHGVRDGRRHQEAQASQARGGHGTRQTADVGGAGGHGHVGSP STAEASRRTGRTRRILGLSVGRRGNRAPEIPSGRDRRRRGCSADVQAAFSHARQHGRAPG RASARRRAAVSTARGPTRSEDPVDQTAAPTQPPVPTARPVARPRPQARARAGAGLLAAAV LMVGLSGCAVAQDGGEAASEAASSSSLQATDTSAEAGGQPVADTAVGNAARTALPSVVTI SATSSSASGSGSGSILDTEGHILTNTHVVTLGGQANDAELTVRTSDGEVYAATVVGTDPL SDLAVIKIDAPDLTPIQIGRSGDLKVGDEAVAIGAPLGLPNTVTDGIISTLDRTIAVASS EAPPSQGESSGSSSGSDQYRFQLPGTPQGTQGEVYINVLQTDAAINPGNSGGALVDAEGR LVGVNVAIASAGQDPSEAGNIGVGFAIPVDYAQRIAQDLIDHGEATHAMLGVSVTPEPAE VRGGGENAQTVFSDGARVQQVVGGSAAAAAGLKEGDVITAVGDRAVIDSESLTAVVREHR VGDSVDVTYLRDGAEQKAEVTFTEDTRS >gi|289558121|gb|ADCD01000034.1| GENE 32 32045 - 32863 864 272 aa, chain + ## HITS:1 COG:all2342 KEGG:ns NR:ns ## COG: all2342 COG1842 # Protein_GI_number: 17229834 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Phage shock protein A (IM30), suppresses sigma54-dependent transcription # Organism: Nostoc sp. PCC 7120 # 6 235 3 215 258 82 31.0 6e-16 MVKQSIFGRISTLAKANINAMLDKAEDPQKMLDQMVRDYTNNIAEAEAAVAQTIGNLRMI EDDYREDQDASRSWGQKALAASQKADDFRTKGDTASADKFDNLAKVAIERQMDFERQAKS AEPTIASQREIVERLKTGLDQMKVKRQQLVAKRDELTARAKSAHAQSAVADAVKSIDLLD PTSEVSRFEEKVRREEARVRGQQEIAASSLDAQFESLEDLGEKTEVEARLAALKAGGAGQ AALTSGDVDADETLTLDYAAEGTAEETGTARG >gi|289558121|gb|ADCD01000034.1| GENE 33 33042 - 34442 1330 466 aa, chain + ## HITS:1 COG:Cgl2722 KEGG:ns NR:ns ## COG: Cgl2722 COG0786 # Protein_GI_number: 19553972 # Func_class: E Amino acid transport and metabolism # Function: Na+/glutamate symporter # Organism: Corynebacterium glutamicum # 4 453 2 439 449 267 37.0 3e-71 MQEQFTAWSVLVDAGLIGALLAVGTLARAVITPLQTLMIPASVIAGILGLVLGPNGLGWL PFSSQLGTYGSILIVIVFVCIALTDDFDVRKIGRPVGAFASYGVLIYASQVAIGALVTLV LLQPLFDAPDSFAALLFAGWAGGFGSAAAVGQAYAANGDATVTSLAYTSATVGMIVGVVG GIIQAKIGAQRGHAQEFAGLTSIPEELRTGVLNQVEERPVIGRHTFSAASVESLAFQVGV VAMIAAAAHGVVSWITSVWPSIVGEDGPQLIIPAFAIAFLLGLIARVLFQATKTAKFLDP GSLNSVSGTATDILIVCGIAAIAPTVVVDYWQPLLLLFVIGLALALFLGIVVAPRVMTDA WFEKQLFTWGWATGAVATGVAMLRIVDPKLKSGTMEQFGVAYIPVVPVEIAAVSFVPLLL IAGLSWAVVGIWGAIAIIAIIAAVWLRRTDPGRRTPAQQAVRASSR >gi|289558121|gb|ADCD01000034.1| GENE 34 34826 - 37885 2583 1019 aa, chain - ## HITS:1 COG:Cgl0762 KEGG:ns NR:ns ## COG: Cgl0762 COG1615 # Protein_GI_number: 19552012 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Corynebacterium glutamicum # 47 987 4 966 967 574 35.0 1e-163 MSFGQGGGGPFGGPPRDGGGTAGGPFGGGGSSAARGRGRPGRPSALVLTIIAVAVLVGLF VVFTNVYTDVLWFSQLGFTEVFWTEVVTKAALFLIAGLGMALAVWLAIRTAWRHRPADAS AAARDSLSQAQRQLEPIRRLVFLGVPLVLGVFAGSTAMNGWNTVLLFLNQVPYGQADPEF GLDLMFFMATLPFLTLVVGYLISVVLVSGITGLLVHYLYGAVRVEEGGGVRITPAARAHI GITLAVFLLLQGVNFWLNRYRTTQSQTGNWAGALYTDVNAVIPTSAILAVTAAIVAGLFV WTVVSGRWRLSLIGTAVLVITALVVGTAYPFIVQEYQVKPSERTLESQYIERNIAMTREA YGLDDVEVTNYEGATDTEAGALAGEEANTANVRLMDPNLISQTFGQLQQFRPYYSFPTTL HVDRYEVDGQTRDTILAARDVNVDDSQSWVNRHTIYTHGYGMVVADASEVAAGGRPQWLL SEIPTRGPLASDQDYEPRIYFGHNSPSYSVVGAPEGAPAVERDRPQTADSQEDTAYTFSG DGGPSVGNLFKRLAYAVKFGSPELVLSSDVNEASQILYDRDPAERVRKVAPYLTVDTAPY PAIVDGRVQWIVDAYTTSDQFPYSTAQQLGEVTVDSLSQGQNPALQGRVNYIRNSVKATV DAYDGSVSLYAWDDQDPLLRAWQNVYPSSLRPYSEMSAGLMDHVRYPEDMFKVQRELLGR YHVTDADDFYENNDAWSVPSDPTREEDVKQPPYYMTLQMPGQDEPAFSLTSSYIPQITDG AQQRNVLYGFLSATGDAGSGEDGVKAEGYGKLRLLELPRSTTVPGPGQAQANFDSNADVS RELNLLRQGASEVLNGNMITLPVAGGILYVQPVYVRSSGGTTYPTLRKVLVSFGDKVGFA DTLQEALDQVFDGDSGAVTPEENQAEAPSPGEKPTAPGTVEEELSAALEEAQDALVQGQE RLAEGDWAGYGEQQKRLNEALKRATAADDALGGDAPAQDQAPAEASPPPSSSPSPTPSG >gi|289558121|gb|ADCD01000034.1| GENE 35 37996 - 39195 652 399 aa, chain - ## HITS:1 COG:Cgl0759 KEGG:ns NR:ns ## COG: Cgl0759 COG3480 # Protein_GI_number: 19552009 # Func_class: T Signal transduction mechanisms # Function: Predicted secreted protein containing a PDZ domain # Organism: Corynebacterium glutamicum # 77 399 37 350 350 176 36.0 5e-44 MAHGIARGRRGSRPRVDWCDRRRAARARRRGRPDQDPQERRCRVRAVPPRTTRVARVPFS GWLALGSAGLALLAPTPYILEGPGPAVDLLGEREGRPVLRVEGGEADPGEGTLDMTTVMV GGPPISTTSLLDLGRGLTDPAVDVVPRELMYPTGVTSDEVGEANSAAMSDSQQTATAAAL HELGREVPQRLVVQQLVPGGPAEGVLRAGDEVIAAEGRPVADLEAVRAAVGAAGPDPITL TVRRDGVEQDLEVPVAAAPEGAPQPWQMGALIETAYDVPVDVELTVPDIGGPSAGLMFAL TVIERLTPGAMTGGAPIAGTGTITGDGVVGPIGGIPQKVRGAAEAGATTFLAPTANCEEL AGRVPEGLTVYPVDTLGQARDIVEAVARGETPAAARTCG >gi|289558121|gb|ADCD01000034.1| GENE 36 39263 - 40663 1186 466 aa, chain + ## HITS:1 COG:MT3287 KEGG:ns NR:ns ## COG: MT3287 COG5282 # Protein_GI_number: 15842777 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Mycobacterium tuberculosis CDC1551 # 71 443 76 442 472 251 41.0 2e-66 MSNDARTPGSDDGRDPLEEMLRQLFGGQGPDPDEVRRAMEGLGGPGGVPFDPSQLNPAMM QQAMAQFQAMMSSGSGSDGPVNWTLAKQAARQAVAGEDPAVGSFARREVDEALRLAELWL DGVTQTEPVGSVGVAWSRAEWVEATMDQWRRLTEPVAVSMSRAMSAAIEQQLPGQLPEGM DASLLGGLQPMLKNMGGTMFGLQLGGAVGALGKEVLSGTDIGLPVAGHRLALVPVNIEEF GDGLSVPDDQIRIYLALRETARMRLFLHSPWLERDLYAAVEQYAAGIRLDTEGIERAAQS VDPMDPGSLQAVFDGASFIAAPDATQQAALDQLELLVALVEGWVDVVVAEAARPLESAAA LRETMNRRRASGGPAEQAFAALVGLELRPRRLREAAAFWEHVTAEHGTEYREEIWRHPER QPTAEDLEDPAGYAGRRSAADASTESLDDELRKLLEGGFGDAPREG >gi|289558121|gb|ADCD01000034.1| GENE 37 40728 - 41417 383 229 aa, chain - ## HITS:1 COG:Cgl0757 KEGG:ns NR:ns ## COG: Cgl0757 COG1451 # Protein_GI_number: 19552007 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase # Organism: Corynebacterium glutamicum # 42 207 4 157 162 107 38.0 2e-23 MPDNGRMRPVPPTPGRPPRAVPAAHRGPARESIDLDWEGTPVRLVRSTARTRTVSAAWRD GRLQVNVPARLSAAQEREWIGRMVAKVGARGGTGQPAADPDGRPADTRSDDALLAWAGRL SAAHLGGRARPVSVTWSARQRRRWGSCTPARGTIRLSTQLRGMPDWVVAAVLVHELAHLL ESGHGPAFRRLVDRYPRYAEAMAFLDGVTFAEGRGRTAPDRWAEDEDAG >gi|289558121|gb|ADCD01000034.1| GENE 38 41416 - 42225 349 269 aa, chain + ## HITS:1 COG:no KEGG:Mlut_15050 NR:ns ## KEGG: Mlut_15050 # Name: not_defined # Def: molybdopterin/thiamine biosynthesis dinucleotide-utilizing protein # Organism: M.luteus # Pathway: not_defined # 28 269 1 242 242 261 96.0 1e-68 MGRRLWTIRRGPGVPWQGGRHRAERRAVRTVAETVTTVPHDAAASALEPGAWAPPTDVHV AGLDAVGAAIAHALAGAGALRLALWDPRPVDAADLGTGLLPGDLGRPRAGALERRLGDVA PGLRVFAHHGPVPVLVGQATVAVGSVLDADLAAQALAADHPLLPVTVGPRAVTVGPWCAP GVRGCPLCRWPADPAGVPGAPTAPGPSAHRGQVDGLAALRAAVLTVDALRTGPAPGVLRA DRVTGRTRRVKVRPRPGCACDPDALGWAF >gi|289558121|gb|ADCD01000034.1| GENE 39 42268 - 44397 1813 709 aa, chain - ## HITS:1 COG:MT3291 KEGG:ns NR:ns ## COG: MT3291 COG0210 # Protein_GI_number: 15842783 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases # Organism: Mycobacterium tuberculosis CDC1551 # 5 705 6 698 700 562 49.0 1e-159 MSTPDEILRGLDPEQRRAATALHGPVCILAGAGTGKTRAITHRIAYGVASGVFDPHRTLA LTFTARAAAEMRTRLRDLGVAGVQARTFHSAALRQLQYFWPQAVGGPMPSLIENKVRLLT EVAQRMRMTVDRAGLRDLAGEIEWAKVSLHAPEGYAEAAKEREMPAGWTATTVARLYTGY EEAKTARNMIDFEDVLLILVGILSTEPQIAATIRDQYRVFVVDEYQDVSPLQHRLLDLWL GDRGDLCVVGDASQTIYSFTGATSRFLTDFRERYPAATVVRLVRDYRSSPQIVEAANRLL ADRTKAGERDRTMPRWPDPLELVSQRPAGPDLVFAECTDDEAEAGWVADRIAALIDDGVP ASEIAVLFRTNGQSQAFETALSSAGIGYQLRGGERFFSRREVRDGILQLRAAARAAQDLT GDDVTDRVRDVLSSLGYSAEPPSASGAARERWESLHALVNLADQLATTRGAEFTLTELVA ELDERAQHQHAPTVQGITLASLHSAKGLEWDAVFLVGLSEGLMPISFAETQAEVDEERRL LYVGITRARQHLSLTWTLSRGTGGRSTRRPSRFLWAIDPTLGGTREHAPARGSAAGPTAP RRRGAKVAVCRTCGKPLETGAERKVGRCLDCPATYDEAVLEELRDWRTRTAAEMRMPAFV VFTDATLVAIAEAMPKTPAELLKVPGLGKAKLEKHGPELLELLHGTPTA >gi|289558121|gb|ADCD01000034.1| GENE 40 44413 - 45402 775 329 aa, chain - ## HITS:1 COG:CC0266 KEGG:ns NR:ns ## COG: CC0266 COG2816 # Protein_GI_number: 16124521 # Func_class: L Replication, recombination and repair # Function: NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding # Organism: Caulobacter vibrioides # 21 316 10 309 313 159 37.0 6e-39 MASCPPSSSDRTAAPPLALPLAREELDRGAVARLDPGHLAAVWAREGTEVLWLQGGRAPV ADGRLVFTAPSGPVPAEAAYLGRGTAADRGPHGREREVVSVAVEPPAALPEDAATALADA VWVGLRDAAAALSDADTGLFVAAVANANWHATHRFCAFCGGVTDVEAAGWVRRCRDCSRE QFPRTDPAVIVAVIDPAGRILLGRNAAWPEGLYSCLAGFVEPGESLEHAVVREIAEEPGI TVTQPRYRGSQPWPFPRSLMLGFTALAPAGAEPVPDGEEILSVRWFEREELARLAREGDV TLPGAVSIARALIEDWYGGTLPDAQTLIT >gi|289558121|gb|ADCD01000034.1| GENE 41 45475 - 46581 687 368 aa, chain + ## HITS:1 COG:BH0381 KEGG:ns NR:ns ## COG: BH0381 COG3173 # Protein_GI_number: 15612944 # Func_class: R General function prediction only # Function: Predicted aminoglycoside phosphotransferase # Organism: Bacillus halodurans # 33 227 32 230 300 61 23.0 3e-09 MDRQPLRLAALAAAAVPGLAPVSVEASPDDPADFSTAVVVDGEGQRWRVRSPRTPEAGIR LETELQVLAGLTPAVRAGLPFRTPSVAGAVRLEGLRTFVYQDMPGRPVTLDELARLGEPA VQDVGRVLAAIHTLPSDVVDHADLPSYTAEQIRQRHLHALDQAATSGRVPPLLLRRWEEA MEEEALWRFTPVPVHGDLHEDNLLLERGRVVGVTGWTDLHVGDPADDVAWLAAATDPDLA DRVLDAYAARRADAGAADDGDAHLMRRAALLAEFALAQWLTRGLDRHDAAMVAEAEAMLA ELASDVRAAQEAAARQAEADAAADAAEDARDAAEDAREAADARTADPETGPVPAVEVVRP INDGPGRP >gi|289558121|gb|ADCD01000034.1| GENE 42 46556 - 50086 2719 1176 aa, chain - ## HITS:1 COG:Rv3201c_1 KEGG:ns NR:ns ## COG: Rv3201c_1 COG0210 # Protein_GI_number: 15610337 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases # Organism: Mycobacterium tuberculosis H37Rv # 20 851 8 790 821 362 38.0 2e-99 MAPLTGDPAAPTDRPRVEDAVHSPEDIAARLRLPPPTQEQAEVVTAPLTPRLVLAGAGSG KTATMADRVVWLVANGLVRPDEVLGVTFTRKAAGELAERINGRVDALLRSGLEIPGFDGE PEDLGRASVSTYHSYAGALVRDHGLRIGVEPEARLLGDADAHRLMGAVVRSHPVVADALG VAPSRLITQALRLAGDMAEHLVTADEVRGFLARLAEQGSALPLPPRAKTPSKEIQEFLTG LADRALMADLVARYDEVKREQDVMDFGDLLRHAARIAVEVPAAGEQERARFPVVLLDEFQ DTSHAQMRIFAGLFGPRGPEDDAPGLGHCVTAVGDPHQSIYGFRGASAGQLFAFPHAFPR LETGPGGAPRRVNADVSHLTIAWRNEEAILAVANAVAAPLNAHAAAAGGAPVEVRTLRPR PGAGEGVVRVDRFVTAEEEAADVVARLGALTGAGPGGTTPSRAVLCRTRAQFGPVLDALD AAGLPYEVLGLSGLLALPEVAEVLAVLHVLADPTRSDQLVRLLTGPRWRIGVADLEVLQE RARFVSRLRARRAAGGREDPAGDAPDVAPVRDVSPEEDADAAALLEALDSLPGEGTDWVG SRGRGFSPEGLARLRAVNAELRRLSTRTGEDPADLIAEVIRETGLDVEVALRPGVSAAAA RRHLNAFQDAARDFGAGTTATDLTAFLAWTESVLEHEDGLGVENAEPTPGLVQVLTAHAS KGLEWDVVAVPGLQEGTFPSTRADRWTSPRAGALPWPLRGDRASLPQWDGSWAQDQRDWV QSAGTGYSSKAAQEGNPDPYAVAVAAHAEREERRLAYVAYTRARSALWLSTSLFKGVNKE PLPASAFLEEVAGLAGEVPGVALGPVPAEDDLPEANPVAGRTLVARWPFDPLDGPEAFVA DPEDPEDEERWQPLPRRSRARRHGVEAAAAAVHAADPAALGDDPELARQVDWVLLRRRDV AGTGGETALPEHVSVSLYGELAADPQAVAEQLRRPLPRPPAHAARRGTAFHAWLEERFGA TGMLDIDSAEDAADLWVDEALDLGPMQEWFRSSHWAERTPAFVEAPVETTVGGITLRGRV DAIYRSGGDPRLPFDPEADWELVDWKTGAVPRGRDLELKSLQLAVYRLAWSRLHGIPLER IGASFVYVAHGQERSFPDLPGEEELERHITDALARR >gi|289558121|gb|ADCD01000034.1| GENE 43 50074 - 53514 2544 1146 aa, chain - ## HITS:1 COG:Rv3202c_1 KEGG:ns NR:ns ## COG: Rv3202c_1 COG0210 # Protein_GI_number: 15610338 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases # Organism: Mycobacterium tuberculosis H37Rv # 41 869 8 801 805 293 36.0 1e-78 MTREHGVDPVDDDAAAPERAARLVRTAAAPEDRITLTDEQEAIASLAPGHGAVLVLGAPG TGRTTVAVEYAARRIEAGLDPESLLLLAPSRDAAARLRDALTRRLAAAGRGTRAVTPVRT WSSYAFDLLRRARVTGPLRHLEVAPRLLTGAEQDTVIAELLEGYAAGLAAAPDWPADVAP AVEARGFRREVRELVDRMSELGLEPGRLQELGTAHGRPEWEAAAVLLQDYRDRIDLGMAE AFDAAGLLSAAVRVLTERHPEDPERDAAAQAFVAEERDRLAVLVVEDLHEATPAVHDLLS VLGRGRDVLLTASPDTTVEGFRGARPDLLARYPGVLDPDPVPGAAPLASPDGRVRVLTRG HRMRAEVQDAYLRVARRVRQRTAGVERTRTETVPADGDGAVRAHVVPTRAHEDQLVLERV LRVHHEDGVPLDRILVVARSGSRVAALARHLEAEGVPVLRDAAGLVLKEEPAVAPLLTLL DAAGALAEDPEAGVEDVLDPDEVVGLLTGRYGMASALHVRRLRQDLLAAERGRGGRRTSD ALLAAALLDPSLAGPEHERHRALRRVHWMLRDGLEAARAPSASPETVLWALWSASGRAER WRSLALRPAEHANDRRESRRADADLDAVVALFKVAERFVDQFPGASPESFAVYMESQDLP VDTLARRAESGDAVHVRTPAAAAGQEWDTVIVVGLQEGVWPNTRLRGQLLGATDLVDLVT LPADAPWPTDHRTRLREVRQDELRMLAAAVSRARRQVVVTAVRAPDEGPSDFLDLVDPPE RLPAEARDAAGARRLTAVPDPITAPALVGRLRRVLEAGDEADAADGVTPRAAAAAGLAVL AEDGVTVADPRRWWGLLPLSTEAALVDPEREVVALSPSRVETALRNPLDWVLYHVGANAG GTLAQSVGTLVHSVAEHHPEGVPEDVRAELERRLPELGLPEGWITEIEHDRARGLVDAYI GYWSIARAAGRRPVAQEVRLLADLTWGGTTVRITGVVDRLEADAQGRPFIADLKTGRSAP TGAEMARQPQLAAYQVAVRAGGLEQVRDDPATDPARRAALAGLERPATPAGAALVQLGAG TLKTKVQDQPALEDGDTWALEQVFTAARRTTGPRFLALHEAGARRCALPSVCPLCSEGRQ VTEWPR >gi|289558121|gb|ADCD01000034.1| GENE 44 53511 - 53750 135 79 aa, chain - ## HITS:1 COG:no KEGG:Mlut_15110 NR:ns ## KEGG: Mlut_15110 # Name: not_defined # Def: predicted methylated DNA-protein cysteine methyltransferase # Organism: M.luteus # Pathway: not_defined # 1 79 58 136 136 97 97.0 2e-19 MAESSPGTPWWRVVRADGSLPLELAARAAVEHEREATPRTPAGRVDLHRARWEPDDGAAR AIRAIADRIVSGPGARMRP >gi|289558121|gb|ADCD01000034.1| GENE 45 53607 - 53960 57 117 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MQVHAPGRGAGRGLPLVLDGGPRGQLQGQRAVGPDHAPPRRAGARLGHRPAGLPRTADPQ QAGQPPVADGASGRDQTGERLEPLAEGERSVVAVASGGEHRVIGHDPILSCPPLRVA >gi|289558121|gb|ADCD01000034.1| GENE 46 54059 - 54652 587 197 aa, chain + ## HITS:1 COG:Cgl1214 KEGG:ns NR:ns ## COG: Cgl1214 COG0847 # Protein_GI_number: 19552464 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases # Organism: Corynebacterium glutamicum # 1 196 41 234 237 125 40.0 6e-29 MVDEHGRAASSAEWLVDPGVPIPAEAAEVHGVTTERAQAEGMPAAQGVAEITETLRDLFA AGIPVVAFNGVYDFTVMDREARRHGLTPLEARPVIDPFVLDKQVDRFRKGKRTLSAVSEH YGVTLENAHTSAADALAAVQVADALAAQYEQLRMAPADLHERQVRWKAEQAESFEQYLRR KDPQATVSRHWPVEAER >gi|289558121|gb|ADCD01000034.1| GENE 47 54681 - 55886 1126 401 aa, chain - ## HITS:1 COG:ML2414 KEGG:ns NR:ns ## COG: ML2414 COG0001 # Protein_GI_number: 15828300 # Func_class: H Coenzyme transport and metabolism # Function: Glutamate-1-semialdehyde aminotransferase # Organism: Mycobacterium leprae # 4 389 53 433 446 381 59.0 1e-105 MAGARGPYLTDVEGNEYVDLVCSWGPMLLGHQHPEVVEAVHAAVDRGLGFGTSTLEETAL AELIASKVPVERVRFVSTGTEATMTALRLARGVTGRNLIVKFAGCYHGHSDGLLAAAGSG VATAALPGSAGVTEAAASETLVVDYNDRAAVEAVFAEHGERIAALITEAVPCNMGVVEPA EGFNAFLREITRRHGALLIWDEVLTGFRATATGGWGLSGQSEGWTPDIWCFGKVIGGGMP AAALGGSAEIMDHLAPLGPVYQAGTLSGNPVAMAAGHATLSRADEAVYAAVTRASDAVRE GLVAALDAEGVDHSIQRAGTLFSLAFGTSGTGVRDYRDAQGQEVFRYAPFFQSMLASGVY LPPSVFEAWFVSAAHDDAAVTRVLDALPAAAKAAAAATPQG >gi|289558121|gb|ADCD01000034.1| GENE 48 56003 - 56989 848 328 aa, chain - ## HITS:1 COG:MT0533 KEGG:ns NR:ns ## COG: MT0533 COG0113 # Protein_GI_number: 15839905 # Func_class: H Coenzyme transport and metabolism # Function: Delta-aminolevulinic acid dehydratase # Organism: Mycobacterium tuberculosis CDC1551 # 2 323 5 328 329 372 62.0 1e-103 MSFPHQRPRRLRQSAALRRLVAETRIHPNQLILPAFIKEGAAEPVPIASMPGVVQHTTDS LKAAAAEAAELGLGGIMLFGVPATRDAVGSAALDPDGVLNRAIRDVKAEVGDGLVVMSDL CLDEFTDHGHCGVLTAEGAVDNDATLEIYARMGVAQAEAGADVLGPSGMMDGQVRVIREA LEGAGHHETAILAYAAKYSSAFYGPFRDAVDSQLTGDRKTYQMDAANRSEALLEVALDLE EGADMVMVKPAMSYLDIVRDVADMADVPVSAYQISGEYAMIEAAAARGWIDRKASIVESV LSIRRAGADSVLTYWAAELGRWMKEGSL >gi|289558121|gb|ADCD01000034.1| GENE 49 57109 - 60561 1380 1150 aa, chain - ## HITS:1 COG:no KEGG:ESA_01816 NR:ns ## KEGG: ESA_01816 # Name: not_defined # Def: hypothetical protein # Organism: E.sakazakii # Pathway: not_defined # 524 960 7 443 484 83 27.0 5e-14 MLLVLRHAGGGGHDVHPRAAQDGDRDVGEARVGEQLRGLLVRQVVRVREHAHVLRVEGVQ AVDAAQEAQSVPHGGEPTGRAWWAGGRRVNGRWTGPPAAGDDRPCRSALGAAAAAADQRD LHGPALGAGAQVRLVLHEGGELGVPEVARVEVHVGAAQVLADQGQRGPAVVGARGVDGLG ERGLQVDARGGVGLVVLGLGLDRHLGRGRVLGDVRRRRTAAPPTGSGLRLRALPVLAGGG VPGGRLVGSGGLVGSGGLGVRVRGLGGVGGVGGLGPAAAASTAAAGSRAAGALGRLGVLL LGGGVLAGLVVVDVVVRGRAEQLEVDELVHGVAQRGGGLAGAQADHPLAALAQAGGQARE VGVGGDEGERVHVAHPEQVHRVDDERGVRGVLAHGVGELLDRLDRVVVQRLLPAVQVGRG PVAVRALDRGGAVGGELLEDQGGELGGDVVAVHQDGDAQGCGGGIGHGTHTSRERPGRGR GGARPLPGAKALRRGRVSGGGAGDGVRDADQALVHELVHAVGAQLAAEARAADTAEGQPG LGGAVLVHEGHAHVEAAGRGLGELEVVGPHRAAEAEVGLVGQGDGLVDVRGPVHDGDRAE ELLGPGAHLAGHPGEHGRLHEGAGAGTGVTAGAHLRPVGDGVVHQLHQVLPSGGAGHGAD LGALLAGVADGRVLERGGELLHELVVVLVEDDHPLGRVAGLPGVAQPRLCRRRGHGVEVA AEDDERIGAAQLQHGLLQVLTGRGGHGGARALAAGEGDALDPRVGDDAVDPVRAHEQRLV DALREAGLGEQLLEPQGGGRADGGGLEQQGVAQQQVGGDEPGQLVVGVVPRHHAEEDAER LLLHARRVGAVGGEGVVRQQLLGVVRVVAEDLGAQLRLPDALGERLAHLLGGDVGELVGV LREQVRRAPQDLGAPDGVGAPPGGEGVLGGGEGVLHLLLAHRVPGADDLSGGGIFGAETG HGWFSFDTGWPGPGRGRGGGSVVDDLHVHADVAARGVGVGADPVSRVGELLGLVMGQVGD HDLEHDGQAEALAGPADGDACAHGGVAELLLGLTGHVLQRGVEARGVAGREQLLGVRAVA AAAHLRGDREVQCDAAVRGLDVAVAAGAGGDGLGGVEGADLDHAVPSLPVTGPGGGPEAR VARLRAHERA >gi|289558121|gb|ADCD01000034.1| GENE 50 60652 - 61491 558 279 aa, chain - ## HITS:1 COG:no KEGG:Mlut_15180 NR:ns ## KEGG: Mlut_15180 # Name: not_defined # Def: uroporphyrinogen-III synthase # Organism: M.luteus # Pathway: Porphyrin and chlorophyll metabolism [PATH:mlu00860]; Metabolic pathways [PATH:mlu01100]; Biosynthesis of secondary metabolites [PATH:mlu01110] # 1 279 1 278 278 398 96.0 1e-109 MRVLLTRQPAQAGDLEAGLAGAEVAGRRLRVGFLPLTDFALPDDDGPLRALLADWAGTDG DAAGPVRSDGSRWLVLTSPNTVRALRAVGWDGHVPASARIAATGPGTARVLTEAGCDAAP WLPPEDRSAEGLIAGLAALHPRGARAWLPQSDRARPRLADGLRAAGWDVRTGLAYRTVPY PAQAGRRLLDGAADEDRGDVVTPARLAVVAAGTAVVLTSSSAAEEFVAAGLRPLVGERVR LVAIGAPTRDTCARRGLPLLGTAPTPDAAGVLAVLRAAA >gi|289558121|gb|ADCD01000034.1| GENE 51 61493 - 62626 729 377 aa, chain - ## HITS:1 COG:ML2421 KEGG:ns NR:ns ## COG: ML2421 COG0181 # Protein_GI_number: 15828303 # Func_class: H Coenzyme transport and metabolism # Function: Porphobilinogen deaminase # Organism: Mycobacterium leprae # 4 305 5 277 318 200 50.0 4e-51 MTPLRIGTRGSALATTQTTHVAEALTERSGLAHELVVIRTEGDVTTGSLASLGGTGVFAS ALRAAVLDGAVDAAVHSLKDLPAAQPETLEIAAVPARADLRDALCARDGLTLATLPEGAR VGTGSPRRVAQLKALRPDLELVDIRGNVQTRLARVPGLEQHDDHAPAAAGSPRGDLDAVI LACAGLDRLGLDHVITERIDPEVMVPAPGQGALAVEIRAEDESFLGRALLDPQAPVGRLH AALELVDDRDTHVAVTAERALLRRLEAGCAAPIGAVARVSDGEAGAPRIEMTAMVAALDG SRVLRRTSSVQLDPVPADVAGDPAAADEWLEDTLFVAAEALGVHVAEQFVAEGADLLPGT VRGVDRGDGAPRPDDPA >gi|289558121|gb|ADCD01000034.1| GENE 52 62631 - 63980 1157 449 aa, chain - ## HITS:1 COG:Cgl1500 KEGG:ns NR:ns ## COG: Cgl1500 COG0276 # Protein_GI_number: 19552750 # Func_class: H Coenzyme transport and metabolism # Function: Protoheme ferro-lyase (ferrochelatase) # Organism: Corynebacterium glutamicum # 48 436 9 366 370 251 41.0 2e-66 MTAAPEPRADAPDHTGPDAGVAPALRTPEKAAAGVDYDACGVMAPKDYDALLLASFGGPE GQDDVIPFLRNVTRGRGIPDERLEEVATHYRANGGVSPINAQNRALKAAIEAELAARGLD LPVYWGNRNWEPYFPDTLERMHADGHRRILTVTTSAYSCYSSCRQYREDMGMAMEQTGLT GKVDLDKTRQYFNHPGFIEPFRDGLRADLASLRAELGDDARIHVLFATHSIPTSDAAAAG PRGLAADLRAQAGAEPGDEGADVYSAQHLDVAREILAGVPEAADVPWSLVYQSRSGPPSV PWLEPDINDAMEHLAGEGAETDAQGRAVAGFVVVPLGFVSDHMEVVWDLDTEAKETAEGL GVGFRRSPTPGTDPRFVAGLVDIVEERLGRREGRAAAGCFPAWYDVCRPDCCAKVMRDGS TRPTTSAVDAAVRGLAEHEAGAAAPAEEA >gi|289558121|gb|ADCD01000034.1| GENE 53 63980 - 64696 728 238 aa, chain - ## HITS:1 COG:Cgl1853 KEGG:ns NR:ns ## COG: Cgl1853 COG3253 # Protein_GI_number: 19553103 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Corynebacterium glutamicum # 20 237 15 231 232 186 44.0 2e-47 MTKDSTTTPAEAGKDWFTTYTAFARPQGEPGWLGLEGRDAKKAAKEFDEAVARVAQTGVT VRGVYDVSGMREAGDVMVWMYGQVPEDLQAAIRELRRTRLLEGTTMVLSAMGADRMAEFN KDHVPAFAMGRKALKWLCFYPFVRSYDWYLLDPKERARMLREHGQLGQDFPQVWANTTSA FGLNDWEWLLGLEADELTDLVDMMRHLRNNETRLHVRSEVPFYTGRRLETAEIAEVLA >gi|289558121|gb|ADCD01000034.1| GENE 54 64747 - 66255 1168 502 aa, chain - ## HITS:1 COG:MT2751 KEGG:ns NR:ns ## COG: MT2751 COG1232 # Protein_GI_number: 15842215 # Func_class: H Coenzyme transport and metabolism # Function: Protoporphyrinogen oxidase # Organism: Mycobacterium tuberculosis CDC1551 # 7 494 8 439 452 92 31.0 2e-18 MSGTALVVGGGIAGLVAAHRLSTAGWDVTLAEATSVLGGAVSPRFLDVPSHGETGAPETQ TLELDGGAESFAVRGAAVRALVEELGLGEKIVAPEPLGSWLHGPAGPVPAPRLGIVGIPG DLDAEGLAAALTPAGLERARQDAEAPMDRWAAALAAGEPVTVAQVVADRLGDEVLERLVA PVVAGVHSADPAVVELERVAPGLLAAAVEHGGLAAGVAALRSAGTPGSLVAGLDGGMVRL TGRLVEALREDGATVLRGVRVAALSRVPATGGWWAQISDRDDEVVRGLDVDRVVLAVDGV TAWDLLAPLSADALDPDAGPALGEGIALATLVVEAAGLDDAPRGTGVLVGAGTDVAAKAL THATAKWAWLREVVARPQEDGVARHPHRHVLRLSYGRQGGGPEALGHRSADEELLAQALV DTATLTGVPLAEEDVVARTVTRWRRSIPPQAGPDRAKADTLIDWARDVPGLDLVGSWVHG TGLAAVVAGVDRTLGADAPPAG >gi|289558121|gb|ADCD01000034.1| GENE 55 66252 - 67475 903 407 aa, chain - ## HITS:1 COG:Cgl0430 KEGG:ns NR:ns ## COG: Cgl0430 COG0407 # Protein_GI_number: 19551680 # Func_class: H Coenzyme transport and metabolism # Function: Uroporphyrinogen-III decarboxylase # Organism: Corynebacterium glutamicum # 30 383 27 374 374 302 49.0 8e-82 MSALSQTPETPAAVPALPAEHPLRTEDPSRSTAASPLLRALRGQRPDRHPVWFMRQAGRS LPEYRQVREGIGMLDSCLMPDLVREITMQPVRRHDVDAAIFFSDIVVPLRLAGVDVEIQP GVGPVLGRAVRTADDVAALPVLEDAALDVIREAVAATVAELGPRPLIGFAGAPFTLAAYM VEGRPSRDHFGPRRMMHADPETWAALADWAATVSGQFLRAQLESGASAAQLFDSWAGSLS ADDYLEHVQPHSRAALAHVADLAGPGVPDGAPLLHFGTGTGEFLHHMRDAGATAVGVDHR LTLAEAHRRLSANPGPDGRGAVPLQGNIDPALLAAPWEVLEAHVRDVVASGAVAPGHVVN LAHGVPPETDAAVLTRVVELIHSLPVAEREGQDPAPGVETAEREERA >gi|289558121|gb|ADCD01000034.1| GENE 56 67613 - 68965 975 450 aa, chain + ## HITS:1 COG:Cgl0412 KEGG:ns NR:ns ## COG: Cgl0412 COG0373 # Protein_GI_number: 19551662 # Func_class: H Coenzyme transport and metabolism # Function: Glutamyl-tRNA reductase # Organism: Corynebacterium glutamicum # 40 435 22 419 441 149 34.0 8e-36 MTVFSLVASHHDLDLDTVARLSAGATGVGPALPGSGAAGAVVLATCNRVEIYAEADGVGV EVARAGLLSAVAASTSLPDEDVHTAFRTLDADATARHLFEVGAGLDSAVVGEREIAGQVR RALTAAQEAGTASGPLVRLFESATRTAKDVGSRTALGAAGRSVVSVALDLAEELRGLTDA AAQRDFWAGATILLIGTGAYAGTTLAQLADRGATTVGVHSASGRAEQFVADRGGWALALG GEAVAGAVAEADVIIGSSGGERQISPERLQELREGARRPLTVVDLALSRDFDPAVADLPD VDLITLESVRLAAPEQAEVAVAEARALVDDAVEEYRAAQRGRSADAAIKALRRHTLGVLD RELERVRARHGCTAAAEEVEFALRRMVNQLLHEPSVRAKRLAAEGRLDRYEDALEAVFGI EAPGRPAPAVGTVEAVCPAHEDEGGAARVA >gi|289558121|gb|ADCD01000034.1| GENE 57 68931 - 69647 517 238 aa, chain + ## HITS:1 COG:MT3303 KEGG:ns NR:ns ## COG: MT3303 COG1309 # Protein_GI_number: 15842794 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Mycobacterium tuberculosis CDC1551 # 25 231 21 224 228 116 37.0 3e-26 MRTRAAPRASRETAPRQEDPVTDHPAATAPEEPGRGRRLPRHERRRQLLDCARAVFAAER YARASMEQIAERAEVSKPVLYQHFPSKHELFLELLDAEVASLRALLEAAMDTRRDNRERV RATVAAVFEYMASPERTHRLIFDSGIDGDPEVRMRSEAVHRLLSSEVARTIRADTTVAEA EAEVLSRGLVGYLLGAARHWADRLDVDARPAAAEMARTVDALVWRGLASLPSADDAPR >gi|289558121|gb|ADCD01000034.1| GENE 58 69768 - 69992 269 74 aa, chain + ## HITS:1 COG:no KEGG:Mlut_15260 NR:ns ## KEGG: Mlut_15260 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 74 1 74 74 115 97.0 5e-25 MEIRIGVQHVGREVVIDSEQSADEVRSLVDAAVADGTPLVLADAKGRQVVVPGDRIGFVE IGAKKSGPLGFAAS >gi|289558121|gb|ADCD01000034.1| GENE 59 70062 - 71627 1119 521 aa, chain + ## HITS:1 COG:Cgl2185 KEGG:ns NR:ns ## COG: Cgl2185 COG0557 # Protein_GI_number: 19553435 # Func_class: K Transcription # Function: Exoribonuclease R # Organism: Corynebacterium glutamicum # 57 493 47 452 475 229 37.0 7e-60 MSPHALGLRGPADPALLERLAALRTELELPPAFPAPVLAEAEAAAREVQAGLTGSPDHAD RTALPFVTVDPAGATDLDQALLLTPVDDDGILVRYAIADVPAFVAPGGAVDAEARRRGQT VYLPDGRVPLHPEVLSEDAASLLPSRERPAFVWTFLLDAAGAVVETGLERARVRSRAQLT YGQVQAFLDAQPGAQAPATPRPGVTDADRAAAEGWPAEVRDSLALLPKVGRRRAAQEAAR GGASLNMPDQEVRVTEDGAHELVHRAPLPAEEHNAQLSLLTGMAAAELMLAAGVGILRTM PAPDADAVAAFRERTRALGVPWDEGQDYGAYLRSLDPADARHLAVLHAATGLFRGAGYTV FDAQAEDPALRTPPAEPAQAALAAPYAHATAPLRRLVDRFVLALCHAHVTGAPAPAWVRS ALPELPALMADSSRRASAASRTAADLVEAAALESRVGAELEGIAVREAKDGTEVWLLDPA VSLRVPGSVPAGTRVRVRIEGVDRASGAITAAGVDWPHSSR >gi|289558121|gb|ADCD01000034.1| GENE 60 71879 - 73289 1368 470 aa, chain + ## HITS:1 COG:MT3307 KEGG:ns NR:ns ## COG: MT3307 COG0513 # Protein_GI_number: 15842798 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Mycobacterium tuberculosis CDC1551 # 36 446 9 425 527 466 60.0 1e-131 MTQNSEHTPAPADVDPTVAEIAEDIVTEDAAPVAPEQTFADFGVHPKIVEALEAKGIVHP FPIQAMTLPVALGGHDIIGQAKTGTGKTLGFGIPALQRAIGPGEPGWDALEAKGTAGAPQ ALIVAPTRELAVQVAGDLTAAAARRPLRIATIYGGRAYEPQIEELQRGIEIVVGTPGRLI DLMRQRHLRLDLVNTVVLDEADEMLDLGFLPDVETLLAAVPAVRQTMLFSATMPGPVVAM ARRYMTQPTHIRAADPEDEGLTKKDIRQLVYRAHHMDKDELVARALQAEGRGRTIIFTRT KRTAARVADELTARGFAAGALHGDLGQGAREQALRAFRNGKVDILVATDVAARGIDVDDV THVFNFQAPEDEKTYVHRVGRTGRAGNKGVAVTLVDWEDMPRWSLIDKALGLGQPEPVET YSSSPHLFSDLGIPKGTKGRLPQAKRVLEGLEGEVLEDLGGPEAKQRDGG Prediction of potential genes in microbial genomes Time: Thu May 26 07:10:34 2011 Seq name: gi|289558100|gb|ADCD01000035.1| Micrococcus luteus SK58 ctg1119142780320, whole genome shotgun sequence Length of sequence - 20870 bp Number of predicted genes - 18, with homology - 17 Number of transcription units - 7, operones - 6 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 22/0.000 - CDS 392 - 691 90 ## COG2740 Predicted nucleic-acid-binding protein implicated in transcription termination 2 1 Op 2 32/0.000 - CDS 776 - 1780 552 ## PROTEIN SUPPORTED gi|17988250|ref|NP_540884.1| transcription elongation factor NusA 3 1 Op 3 . - CDS 1764 - 2351 449 ## COG0779 Uncharacterized protein conserved in bacteria 4 2 Op 1 . - CDS 2482 - 3231 493 ## COG0730 Predicted permeases 5 2 Op 2 . - CDS 3275 - 5101 1769 ## COG0442 Prolyl-tRNA synthetase 6 3 Op 1 . + CDS 4052 - 6226 785 ## 7 3 Op 2 . + CDS 6132 - 8897 1126 ## RMDY18_14890 hypothetical protein 8 4 Op 1 . - CDS 8783 - 10072 833 ## COG0743 1-deoxy-D-xylulose 5-phosphate reductoisomerase 9 4 Op 2 10/0.000 - CDS 10152 - 11774 1548 ## COG4147 Predicted symporter 10 4 Op 3 . - CDS 11771 - 12145 391 ## COG3162 Predicted membrane protein - Term 12190 - 12240 6.0 11 5 Op 1 6/0.000 - CDS 12346 - 13224 717 ## COG2301 Citrate lyase beta subunit 12 5 Op 2 6/0.000 - CDS 13221 - 13622 360 ## COG2030 Acyl dehydratase 13 5 Op 3 2/0.000 - CDS 13753 - 14940 1261 ## COG1960 Acyl-CoA dehydrogenases 14 5 Op 4 7/0.000 - CDS 14956 - 17094 1544 ## COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit 15 5 Op 5 . - CDS 17102 - 18718 1407 ## COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) 16 6 Op 1 . + CDS 18832 - 19479 460 ## COG1309 Transcriptional regulator 17 6 Op 2 . + CDS 19530 - 20048 878 ## PROTEIN SUPPORTED gi|239917211|ref|YP_002956769.1| acetyltransferase, ribosomal protein N-acetylase 18 7 Tu 1 . - CDS 20147 - 20794 589 ## COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes Predicted protein(s) >gi|289558100|gb|ADCD01000035.1| GENE 1 392 - 691 90 99 aa, chain - ## HITS:1 COG:Cgl1940 KEGG:ns NR:ns ## COG: Cgl1940 COG2740 # Protein_GI_number: 19553190 # Func_class: K Transcription # Function: Predicted nucleic-acid-binding protein implicated in transcription termination # Organism: Corynebacterium glutamicum # 7 78 22 92 112 63 51.0 8e-11 MTSRTVVRTCIGCRSRADQQELVRVALDSSTEPPSVVWDPERRRPGRGAWLHPGEDCLHL ALRRRAFGRAFRSAVDADALVRTAEAPADRPTDEGGSEI >gi|289558100|gb|ADCD01000035.1| GENE 2 776 - 1780 552 334 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|17988250|ref|NP_540884.1| transcription elongation factor NusA [Brucella melitensis 16M] # 1 323 5 343 537 217 38 6e-56 STRRHELDIDMSALRMLEAEREIPMDRLIPTIEQALLMAYHRTPGALKRARVEIDRATGH VTVWATELDEDDTPIGEFDDTPNGFGRVAASTARQVMIQRMREEDDDKVLGEFKDKEGEL VSGVIQQGLNRHMVQVNLGTLEAVLPPPEQVPGEDYAHGRRIRAYVVSATRGAKGPSVTV SRSHPGLVRKLFELEVPEIADGSVEITALAREAGHRTKMAVRATRPGVNAKGASIGEMGS RVRAVMTELNDEKIDIIDHVDDPAAMIANALSPATTVSVEILDADQHSARAVVPQYQLSL AIGKEGQNARLAAKLTGWRIDIVGDGVTTSAPGR >gi|289558100|gb|ADCD01000035.1| GENE 3 1764 - 2351 449 195 aa, chain - ## HITS:1 COG:MT2908 KEGG:ns NR:ns ## COG: MT2908 COG0779 # Protein_GI_number: 15842383 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Mycobacterium tuberculosis CDC1551 # 49 178 44 163 183 60 38.0 3e-09 MDSTDRRDDLAELRTRVEEALAADDVVVEQVRATGTAEHRTVEVVLDRASGTQGLSLDDV ARLSGRVSAALDALGDHVPGVGAGEYLLEVTTAGVDRPLTEPRHFARNVGRLVEVSVDGA APVTARLKDVTADDVELAVVRPPAKKGMKAKELPAERVALDRLGPAIVQVEWSPAQQAGD ADAAAGEDTAEHTEA >gi|289558100|gb|ADCD01000035.1| GENE 4 2482 - 3231 493 249 aa, chain - ## HITS:1 COG:RSc3337 KEGG:ns NR:ns ## COG: RSc3337 COG0730 # Protein_GI_number: 17548054 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Ralstonia solanacearum # 1 244 6 250 252 140 43.0 2e-33 MLAAGFAAGWIDAVVGGGGLLQLPALLLVPGLSPIQALATNKLGSVFGTATSALTYRRRL RQGLSTALPMAAVAFGAALGGAVVAAHLPAGVIRPVILVALIAVAVFTAVRPGLGQVAGV GPRRSAALARAVALGAAVGFYDGVLGPGTGTFLILGLVLLLKFDFLHASAQAKVVNLATN LGALAYFVPAGHAVLGLGLLLGAANLVGGYVGARMAIARGTGFIRVVYLMVVTALIVKVG ADTLAPLLR >gi|289558100|gb|ADCD01000035.1| GENE 5 3275 - 5101 1769 608 aa, chain - ## HITS:1 COG:Cgl1948 KEGG:ns NR:ns ## COG: Cgl1948 COG0442 # Protein_GI_number: 19553198 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Prolyl-tRNA synthetase # Organism: Corynebacterium glutamicum # 1 608 1 587 588 652 59.0 0 MPLRMSTLFLRTLRDDPAEAEVASHRLLVRAGYIRRAAPGIYSWLPLGLKVLAQVERIVR EEMDAIGAQEVHFPALLPREPYEATGRWDEYGDGLFRLQDRRGNDYLLAPTHEEMFTLLV KDLYSSYKDLPAYLYQIQTKYRDEARPRAGLLRGREFIMKDSYSFTVDDAGLDAAYEAHR AAYLRIFDRLGLEVVPVRATSGAMGGSRSEEFLHPTEVGEDTFVESDGGYRANVEAVTTV APAPLDEAAMAALPAAEVKDTPVSTTIAALVDVANQVAPREGEPWTAADTLKCVVVTAVV DGGERRPFVVGVPGDREVDLKRLEASVGPALGVVGEPTLEAATAADLAEHPALVKGYIGP AAADAVAGTPVLGAEDSVSGLPFFVDPRIAPGTAWITGANADQRHVFGLVAGRDFTWDGV LEATAVREGDEAPDGSGPLHTRRGMEMGHIFQLGRKYAEALDLKVLDVHGKQVVVTMGSY GIGITRAVAAIAERYHDDKGLAWPRAVAPADVHVVVATKGEDGLAAAETLAAGLEAEGLT VLVDDRPKVSPGVKFKDAELIGVPTAVVVGRGLADGELELKDRATGEARPVPVDGAVAAV LAEVRDGR >gi|289558100|gb|ADCD01000035.1| GENE 6 4052 - 6226 785 724 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLGQVRGGRGLERGLADHAERRAHGGLETLEVHLTVAGHAHDERAALTAVHHRGDHDALE RVRGGPRLALARGHLVGDVHERGDGGGDRGVLDLGGGQGRHGGLVQRGGGHRGDGLDVGP VAAVGFDEGVLAHLGGVQELLGAGAAHRTGGGPHRHDLEAEAVEDPQVGGPVGLVRGVQA GVVHREGVGVLHDELAPAEQAGARAGLVPVLGLDLVQVRGQVLVGGVQVLHQEREHLLVR GGQEVVVAPAVLQAEQPVAVLVPAPRGLVGLPRQQRREVHLLGADRVHLLAHDPLHLGQH LQAQRQPRVDARGRATDVPGTDEEPVARHLGLRRVVAQGAQEQGGHAQGHDGASSDGLAR SGAARGTGRRRHGVPGVLTADPIARAGSAGSVQDGRERAAPLEPHAPVRAQRGGVVRVDV EADHGRLEAHVVHDGGHRRRRQPSAPRGGGHPHALDLGAPGGEQPDVRLEAQRAARVARA RVDEDAPGLDQPLDAVPVLGRAAGERGEAELLLEHRRAGRQDAREVAWLRLHHGRVRVDP PGRAQHEQRLVGAHGPGPVARGGEGLAGGQHGAGRAVDRPEPAAQRGGRRAERLRVARRP ARVRGLGRGDRHHVRADPDGRAQRAGARGVVVDPEEQGARRSPARAGQAARLEQGVHEHV GHGGTGGQRRERGGVRVGQQADAVTRGGPDLPVSGRRPPGHRRQPGHRRPPPGPSHRRSG WPPR >gi|289558100|gb|ADCD01000035.1| GENE 7 6132 - 8897 1126 921 aa, chain + ## HITS:1 COG:no KEGG:RMDY18_14890 NR:ns ## KEGG: RMDY18_14890 # Name: not_defined # Def: hypothetical protein # Organism: R.mucilaginosa # Pathway: not_defined # 404 583 5 187 451 78 27.0 1e-12 MDGDHRGTGGSLVTAVLPQVHLTGDPVGLLDEGLHDLVLGHGADDLALDEDLALAVAGGD AEVGLAGLARPVDDAAHDGHPQRDLEVLEALGDLLGQRVHVHLGAAARGAGDDLELALTQ VQGLQDLQAHLDLLDRRRGEGDADGVTDALAEQVAEGGGGLDGALEGRAGLGDPEVQRPV TLLGEQLVGAGHDHRVVVLDGDLEVLEAVLLEEGGLPDGGLDEGLRGGLAVLLQQARVQG AGVDADADGGAVVRGGLRDLLDLVVELLDVARVHAHGAAAGLDRREHVLRLEVDVRDHGD GGLLGDDLEGLGVLVRGAGHADDVAAGGRELGDLLQGRADVVRLGGGHRLHRDGVLRADA HRAHLDLPGGAARGQHGRRGGRHSKADGHGGAPHGFSGSTARGRRVLRSILGARAPRGSG RPPTANGPGSEQPDRLHDVRHDQDDAHEQHRRAHRVGQRQHAGQVERPRVRAARDPGPAA AHRLPQGAGHVAAVEREQRDEVEHHERHVHAREQGQQQGGLVRQRGLLERRRLPGDPADP HHGHRAVRVALGRGHHGDGGVPQPLRQHQDDVDDAPHLLGHERAGVERGAADGLDLGAHA DEPDLVGRDGPVRGPLGPAQRVRHGPFRQARGQGGAHPLAVAFPLDPGGLSGAVPDRGGE GIPVGDRLPVEGEHGVPGAQSRLVGGPGGIARAAVLCPAGGGAGLLLLRRDHTPVDLGDG GARLRGAHRGDQQGGHAEGDEQVHERPAEHDHHPLPHRQGQEAAVLVAGADLIGGLGPRV VGQAAQLLDEARGRRAGRLPGPRRGQHPDHRDVAAQRHGLEPVLRLTATPRDERRAEADH VLRDAHAEELGRDEVADLVQGDRDRQAQRDREDTRDVPEDLHDGHQRARAARRAQASAAS TASTVSAAGSWPAAASTSSGA >gi|289558100|gb|ADCD01000035.1| GENE 8 8783 - 10072 833 429 aa, chain - ## HITS:1 COG:Rv2870c KEGG:ns NR:ns ## COG: Rv2870c COG0743 # Protein_GI_number: 15610007 # Func_class: I Lipid transport and metabolism # Function: 1-deoxy-D-xylulose 5-phosphate reductoisomerase # Organism: Mycobacterium tuberculosis H37Rv # 36 427 38 408 436 327 57.0 2e-89 MSRPGWHHGGVTHGSLTDYTLPAPDPADDGGAPRAVALIGSTGSIGTQGLDVIAQDPARL RAVALAGGANTTLLAEQAVRFEVEAVGSAAAGEEELRAALADAAARLGRPAPRPVLFTGP CAAEQIAAWPGADTVLNGITGSIGLRPTLAALHAGHRLALANKESLIVGGALVKAAAAPG QLVPVDSEHSALAQALRGGTADEVRRLVLTASGGPFRGLDRAALHAVTPAQALAHPTWDM GRVVTTNSASLVNKALEVIEAHLLFDVPLDRIDVVVHPQSVVHSMVEFVDGSTLAQASPP DMRLPIALGLCWPRRVPGAAPACDWTRAATWTFEPLDEEAFPAVRAAKEAAAASPTHMAV FNAANEEAVDAFHAGALPFDGIVDTVRAVVADYAPEDVLAAAGHDPAALTVDAVLAAEAW ARRAARARW >gi|289558100|gb|ADCD01000035.1| GENE 9 10152 - 11774 1548 540 aa, chain - ## HITS:1 COG:Cgl0810 KEGG:ns NR:ns ## COG: Cgl0810 COG4147 # Protein_GI_number: 19552060 # Func_class: R General function prediction only # Function: Predicted symporter # Organism: Corynebacterium glutamicum # 10 540 11 551 551 560 66.0 1e-159 MSASTPLLQAAAQTVGNPAVNIGIFVAFVVVTLVIVIRASKTNASSADYYAGGRGFSGTQ NGTAIAGDYLSAASFLGIVGAIALYGYDGFLYSIGFLVAWLVALLLVAELLRNTGRFTMA DVLSFRLQQRPVRIAAAFGTMAVCLFYLLAQMAGAGGLVSLLLNINDRAGQALVIVIVGV LMIVYVLIGGMKGTTYVQIIKAILLIAGAGIMTVWSLALFGFDFNALLGAAVELNPKGEA ILEPGLQYGASALTRLDFVSLGIALVLGTAGLPHVLMRFYTVPTAKEARKSVVWAIVLIG AFYLFTLVLGYGAGALIGPERILAAPGGQNSAAPLLAFELGGSILLGLISAVAFATILAV VAGLAITAAASFAHDVYGSVIAKHPLTPQEEVRIGKITVVVIGVLAIVGGIAAQGQNVAF LVALAFAVAASANLPTILYSLFWRRFTTRGAVWSMYGGLLSAIILIVLSPVMSGTPTSMI PGADFAVFPLKNPGIVSIPLAFFLGWLGSVTSSRAEDPDKQAEMEVRSLTGIGAEKPVQH >gi|289558100|gb|ADCD01000035.1| GENE 10 11771 - 12145 391 124 aa, chain - ## HITS:1 COG:Cgl0809 KEGG:ns NR:ns ## COG: Cgl0809 COG3162 # Protein_GI_number: 19552059 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Corynebacterium glutamicum # 20 110 2 92 93 99 57.0 1e-21 MSSSEPTAPVPTAAQFRAAQQSEEFIELRRTHRSFAFPMTVAFFVWYLVFVIAGAFFPEF MAIRLGGNITLGLILGLLQFVTTFLITFAYVRFSNRTLDPRATALRERLERESAGAHENP EATR >gi|289558100|gb|ADCD01000035.1| GENE 11 12346 - 13224 717 292 aa, chain - ## HITS:1 COG:MT2573 KEGG:ns NR:ns ## COG: MT2573 COG2301 # Protein_GI_number: 15842026 # Func_class: G Carbohydrate transport and metabolism # Function: Citrate lyase beta subunit # Organism: Mycobacterium tuberculosis CDC1551 # 1 284 1 267 273 207 52.0 2e-53 MSALTLGPAVMFTPADRSERYATALERADAVILDLEDAVTPEARPAARDAVAAAWVGRAT GGVDGGPLDEDRVVVRVNPAGTADHDADLAMLAGTGWRTLMLAKAESAAQVDGVVAALGP QTRVVALCETAAGILAAAELAAHPHVGALMWGAEDLVASMGGSSSRTPEGAYRSVVQHAR ATVLLAAAAHGAAAWDAVHLDLGDEAGLAAEAEDAVALGCTATVCLHPLQVPIVRSAYTP APEALERARRVLAAAEGRHGAFALDGTMVDEVVLAQARALLRRADAVGPAGA >gi|289558100|gb|ADCD01000035.1| GENE 12 13221 - 13622 360 133 aa, chain - ## HITS:1 COG:MT2574 KEGG:ns NR:ns ## COG: MT2574 COG2030 # Protein_GI_number: 15842027 # Func_class: I Lipid transport and metabolism # Function: Acyl dehydratase # Organism: Mycobacterium tuberculosis CDC1551 # 1 110 65 176 185 125 60.0 2e-29 MNPQALHLDHAYAAAQPFGRPLVNSMLTLSTLVGLAVGQTTQGTLVAQLGLGEIAFPKPV FHGDTLYGRSEVTAIRESSSRPGQRIVTFAMTGENQHGDVVVRAQRTCLMWTAQAHAEAK AKAADAAGTGERA >gi|289558100|gb|ADCD01000035.1| GENE 13 13753 - 14940 1261 395 aa, chain - ## HITS:1 COG:MT2575 KEGG:ns NR:ns ## COG: MT2575 COG1960 # Protein_GI_number: 15842028 # Func_class: I Lipid transport and metabolism # Function: Acyl-CoA dehydrogenases # Organism: Mycobacterium tuberculosis CDC1551 # 11 395 13 393 394 526 76.0 1e-149 MSTKHRTLPALEEDYQVLSDTVREFADEVVAPVSAELDAKHEFPYEIVAQMGEMGLFGLP FPEEYGGMGGDYFALALALEQLGRVNQSVAITLEAGVSLGAMPLLKFGTEEQKQRWLPDL VAGTHLAGFGLTEPGAGSDAGGTQTTAALEDGQWRINGAKEFITNSGTDITSLVTVTAVT GTVEGRTGHDGRPAKEISTILVPAGTEGFSVAKAYDKVGWNSSDTHALHFTDARVPEENL LGARGRGFANFLEILDEGRIAIAALATGAAQGCVDESVAYAKQRTSFGQKIGQFQAVSFK IARMQARAHAARLAYYEAAQKMLAGKPFKTEAAMAKLIAGEAAMDNARDATQVFGGYGFM NETLVARHYRDSKILEVGEGTTEVQLMLIARELGL >gi|289558100|gb|ADCD01000035.1| GENE 14 14956 - 17094 1544 712 aa, chain - ## HITS:1 COG:MT2576 KEGG:ns NR:ns ## COG: MT2576 COG4770 # Protein_GI_number: 15842029 # Func_class: I Lipid transport and metabolism # Function: Acetyl/propionyl-CoA carboxylase, alpha subunit # Organism: Mycobacterium tuberculosis CDC1551 # 11 701 1 653 654 554 52.0 1e-157 MTENHAQGTPLFDTVLVANRGEIAVRVIRTLRRLGIRSVGVYSDADADARHVREADTAVR LGPAPARESYLDIDAVVDAARRTGAQAVHPGYGFLSENADFARALDAAGIVFVGPPVGSL DAMADKIRAKETVAAYDVPVVPGIQDPTLTDEQITAEAERVGFPLLIKPSAGGGGKGMVA VRAAEELSGALASARRTARSAFGDDTLLLERLITAPRHIEVQVFADAHGATVHLGERECS LQRRHQKVIEEAPAPLLTGLAHGAELRERLGRAAVDAAVSVGYRGAGTVEFLVSDENPDE FFFMEMNTRLQVEHPVSEEVVRVRGQRLDFVELQLRIAAGEPLGFAQEDVSLDGAAVEAR VYAEDPANGFLPSTGPVLRWREPAGEGVRVDTLLLPSQGEERAFGSVLTIRDDDGALWEG LAAPDGEQPEITGFYDPMIAKLIARGADRAEALDRLDAALADTVLFGVRSNLGWLRELSA REDVQAGRLTTELIDGLEAWTAPALPEDLAALAAEALADVSEDAAAAERRAAGTAWARAD GWRGIGAPQPGMRVRVGDEDRILTAPAADAEVDEDAGALAGVNLLAGDPRDPRSAWLHRD GAAWQVRRLTRAEVVEAARAAAAARRAPAGAASPEARTPMPGTVVAVSVATGDTVAAGQE LAVVEAMKMEYPVTAAVAGVVTVHVAEGDSVAAQALIAVVEPAEHAAPEENA >gi|289558100|gb|ADCD01000035.1| GENE 15 17102 - 18718 1407 538 aa, chain - ## HITS:1 COG:MT2577 KEGG:ns NR:ns ## COG: MT2577 COG4799 # Protein_GI_number: 15842030 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) # Organism: Mycobacterium tuberculosis CDC1551 # 8 538 4 529 529 704 68.0 0 MTASTPAPAAQAAPTVAERNAAGHARLEQELADLVARTSLGGPERARERHTGRGKLLVRD RIDALLDEGSPFLEVGALAAHGLYDGDSPAAGVVAGIGLVHGRLVMVVGNDATVKGGTYY PMTVKKHLRAQEIALENRLPCIYLVDSGGAFLPRQDEVFPDREHFGRIFRNQALLSSQRI PQLAAVCGSSTAGGAYVPAMSDETVIVREQGTIFLGGPPLVKAAIGEDVSPEDLGGGRLH AERSGVADHLADDDLHAMQILRDIVATLPPAEEPAWEVAPAAEPAKDPAELTSVVPVDVN TPYDVREVIDRLVDGGSVHEFKPLYGTTLVTAFARIDGHPVGVLANNGILFGDSARKGAH FIELCDQRGIPLLFLQNISGFMVGRDAEAGGIARDGAKMVTAVATARVPKLTVVIGGSFG AGNYAMCGRAYSPRFLWMWPNARISVMGGPQASSVLTQIKQDQRAAAGEEPMSPEEVEAF QAPVRRQYEDQGSPLYSTARLWDDGVITPGQTRRVLSLALDVISRSPLPDSRFGLFRM >gi|289558100|gb|ADCD01000035.1| GENE 16 18832 - 19479 460 215 aa, chain + ## HITS:1 COG:MT2581 KEGG:ns NR:ns ## COG: MT2581 COG1309 # Protein_GI_number: 15842034 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Mycobacterium tuberculosis CDC1551 # 2 207 22 226 231 128 46.0 8e-30 MPAADPASPAAPATPPTAREAAKARRRVDLLAAAARLFAARGFDAVRLEDIGAAVGISGP AIYRHFAGKAAVLTAILDTASQDLLDGGLAAEAQHAPGPETLRALIGFQADFALTQRDVI RVQDRDMSALPDGARTAITRTQRAYIDVWARQLQVVHPHEDRATAVFRAQAVLGLLNSTP RSVRRTAADRAARRATLAAMAWAAATAPGPLPGED >gi|289558100|gb|ADCD01000035.1| GENE 17 19530 - 20048 878 172 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239917211|ref|YP_002956769.1| acetyltransferase, ribosomal protein N-acetylase [Micrococcus luteus NCTC 2665] # 1 172 1 172 172 342 97 9e-94 MTADAVEPRPERSTAVLLRDVRPEDLDEFFLHQQDEQANLMSAFAPRNPRDRGVFDYHWA HLLGDEHTIVRTIEHEGRAVGALVCTQQDGVGELSFWTAQDYWGLGLTTAAVDRFLEEHT ARPLRAHVPEDNVGSVKVLSRRGFETVGEEKVFSNARAEVITELVMELPAAD >gi|289558100|gb|ADCD01000035.1| GENE 18 20147 - 20794 589 215 aa, chain - ## HITS:1 COG:SP1162 KEGG:ns NR:ns ## COG: SP1162 COG0508 # Protein_GI_number: 15901027 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes # Organism: Streptococcus pneumoniae TIGR4 # 1 208 134 342 347 141 38.0 7e-34 MVQSAFTAPHVTEFLQVDVTETMELLAELKASREFRDVKLTPMTLAAKACLVAMERTPDV NARWDEAAGTIVRQNFVNLGFAAATPRGLMVPNVKDAQAMSLRELADAIRDLTGLARDGR LSPADLAGGTFTLTNVGVFGVDAGTPIINPGEGAIIAIGQVRRMPWEHRGEIALRDVMTL SLSFDHRFVDGEQGSRFLADVGAILRRPGLTLTMV Prediction of potential genes in microbial genomes Time: Thu May 26 07:11:39 2011 Seq name: gi|289558067|gb|ADCD01000036.1| Micrococcus luteus SK58 ctg1119142780349, whole genome shotgun sequence Length of sequence - 40601 bp Number of predicted genes - 31, with homology - 31 Number of transcription units - 14, operones - 6 average op.length - 3.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 125 - 382 444 ## PROTEIN SUPPORTED gi|239917666|ref|YP_002957224.1| LSU ribosomal protein L31P 2 2 Tu 1 . + CDS 486 - 1544 1030 ## COG0095 Lipoate-protein ligase A 3 3 Tu 1 . - CDS 1626 - 4274 2173 ## COG0308 Aminopeptidase N 4 4 Tu 1 . - CDS 4378 - 5622 1150 ## COG0448 ADP-glucose pyrophosphorylase 5 5 Tu 1 . + CDS 5736 - 6932 1008 ## COG0438 Glycosyltransferase 6 6 Op 1 . - CDS 7008 - 9131 1912 ## COG1960 Acyl-CoA dehydrogenases 7 6 Op 2 . - CDS 9128 - 9712 423 ## Mlut_11710 transcriptional regulator, TetR family 8 7 Op 1 10/0.000 + CDS 9961 - 11304 1255 ## COG0183 Acetyl-CoA acetyltransferase 9 7 Op 2 7/0.000 + CDS 11337 - 12686 170 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 10 7 Op 3 . + CDS 12689 - 13582 635 ## COG2030 Acyl dehydratase 11 8 Tu 1 . - CDS 13650 - 17108 2479 ## COG1640 4-alpha-glucanotransferase - TRNA 17241 - 17327 71.8 # Leu GAG 0 0 12 9 Tu 1 . + CDS 17444 - 18769 1073 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases 13 10 Op 1 . + CDS 19154 - 19372 183 ## RSal33209_2047 hypothetical protein 14 10 Op 2 1/0.200 + CDS 19442 - 20275 662 ## COG1968 Uncharacterized bacitracin resistance protein 15 10 Op 3 . + CDS 20373 - 21608 954 ## COG0215 Cysteinyl-tRNA synthetase 16 11 Tu 1 . - CDS 21631 - 22581 766 ## Mlut_11820 ATP-grasp superfamily enzyme 17 12 Op 1 . + CDS 22580 - 23413 667 ## COG0637 Predicted phosphatase/phosphohexomutase 18 12 Op 2 . + CDS 23410 - 24537 857 ## COG1994 Zn-dependent proteases 19 12 Op 3 1/0.200 + CDS 24554 - 25618 945 ## COG2519 tRNA(1-methyladenosine) methyltransferase and related methyltransferases 20 12 Op 4 . + CDS 25619 - 27373 1425 ## COG0464 ATPases of the AAA+ class 21 12 Op 5 . + CDS 27370 - 29097 1331 ## Mlut_11870 putative proteasome component/protein of unknown function, DUF275 22 13 Op 1 . - CDS 29113 - 29706 456 ## COG3404 Methenyl tetrahydrofolate cyclohydrolase 23 13 Op 2 . - CDS 29747 - 30211 250 ## PROTEIN SUPPORTED gi|223038710|ref|ZP_03609003.1| 50S ribosomal protein L23 24 14 Op 1 . + CDS 30281 - 31918 1013 ## Mlut_11920 putative proteasome component/protein of unknown function, DUF275 25 14 Op 2 . + CDS 31956 - 33047 717 ## COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1 26 14 Op 3 . + CDS 33080 - 33475 339 ## COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1 27 14 Op 4 . + CDS 33492 - 35591 1365 ## COG2378 Predicted transcriptional regulator 28 14 Op 5 . + CDS 35629 - 35886 275 ## Mlut_11960 twin arginine-targeting protein translocase, TatA/E family 29 14 Op 6 4/0.000 + CDS 35907 - 36764 785 ## COG0805 Sec-independent protein secretion pathway component TatC 30 14 Op 7 . + CDS 36839 - 39829 2360 ## COG4581 Superfamily II RNA helicase 31 14 Op 8 . + CDS 39849 - 40599 436 ## Mlut_11990 hypothetical protein Predicted protein(s) >gi|289558067|gb|ADCD01000036.1| GENE 1 125 - 382 444 85 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239917666|ref|YP_002957224.1| LSU ribosomal protein L31P [Micrococcus luteus NCTC 2665] # 1 85 1 85 85 175 98 3e-43 MKSEIHPDYRYVIFNDLASGEKILTRTTANSDKTAEWTDGNTYPVIDVEISAASHPFYTG KQRIMDTAGRVERFNARFKGFGGKK >gi|289558067|gb|ADCD01000036.1| GENE 2 486 - 1544 1030 352 aa, chain + ## HITS:1 COG:Cgl1050 KEGG:ns NR:ns ## COG: Cgl1050 COG0095 # Protein_GI_number: 19552300 # Func_class: H Coenzyme transport and metabolism # Function: Lipoate-protein ligase A # Organism: Corynebacterium glutamicum # 5 351 4 351 352 340 51.0 2e-93 MRTLHGEYKVIGGKLVAADLSLADGRIATASINGDFFLEPDEALEDLNAAVTGLSADAEH RVIREAVERGLRPEAELFGVDAFAVASAVRRALGKATTWEDHEWEVIGPEPMPIALTVAL DEVLTRQVAEGRRKPTMRLWQWNEPAVVIGAFQSLANEVDPEGARRHGINVVRRISGGGT MFMEADNCVTYSMHVPSSLVDGLETAETYPFLDEWTMDALSRLGVQAFYQPLNDIATEQG KIGGAAQKRVGTAGLLHHVTMSYDIDADKMLEVLRIGREKLRGKGVASAKKRVDPLRRQT GVSRAEIWETMMTTFQERYGARRVELDEATREEAEQLARTKFTTPEWTARVP >gi|289558067|gb|ADCD01000036.1| GENE 3 1626 - 4274 2173 882 aa, chain - ## HITS:1 COG:ML1486 KEGG:ns NR:ns ## COG: ML1486 COG0308 # Protein_GI_number: 15827782 # Func_class: E Amino acid transport and metabolism # Function: Aminopeptidase N # Organism: Mycobacterium leprae # 12 881 5 861 862 551 41.0 1e-156 MTDTTPDLDATNVTRAEAADRSRLLTVQDYVVDVDLSDARDAATDTYPVRTVIRFACAEP GAQTHLDWIHGGVESVTLNGTALDVAEVVGEARVLLPDLAAQNVVELVGRSVYSRSGEGL HRFTDPADGEVYLYTQYEPADARRVFPDFEQPDLKAAFTFSLTGPEDWVLASNRPEVSRT PAGDGVVRVEFAPTLPQSTYITTLLAGPYAQWEDAWDGHPAGGAQAVPLRLFTRRTMADA FDPEAVFDVTKRGLTFFHDLFGVAYPWGKYDQAFVPEYNLGAMENPGLVTFTEDFVFTSR ATAVQYEGRANVILHEMAHMWFGDLVTMHWWDDLWLKESFADYMGALGVDEATDFRTAWV TFASRRKAWAYVQDQMPTTHPIVADIVDLEAARQNFDGITYAKGASVLKQLAAYVGRDAF LDAAHRYFAAHAWGNASLADFMAALEAASGRDMRAWADAWLHTSGVPRLRVDVDGDAAVL RQEGTDPVTGVPILRPHVLKVGVFTPGQDGVLRRTAQVTADVPGGAGGAAVPLPDLEVPG GVRLVLPNDEDLTYAAVALDAGSLGAALTHPIADPLAEATVWAALWSMTRDGELPVARFL DAVATLSARIATVGVHAQVLAQAAAAVGQYARAEDRDALRARLGEVLAEQTRTLEAGSDR QRTAARTWATLARADVGMAAALEAALLGEDAATSAPGLAIDAELRWLVLQALAATGRADQ DRLDAELEAGRTAQTVTWHRLATAARPEAEVKAAAWEAVMSGRTATGTELSNDLLSATAA GFAAGEVELLAPYESGFWPRLTSVWASRSNGLASRAIGGLFPGRQDAVAGGADAQESHPT LAAAQRWLDEHPDAPGALRRLVVEHTDALRRSLRVQAVQPAG >gi|289558067|gb|ADCD01000036.1| GENE 4 4378 - 5622 1150 414 aa, chain - ## HITS:1 COG:Cgl1094 KEGG:ns NR:ns ## COG: Cgl1094 COG0448 # Protein_GI_number: 19552344 # Func_class: G Carbohydrate transport and metabolism # Function: ADP-glucose pyrophosphorylase # Organism: Corynebacterium glutamicum # 6 389 11 389 409 426 60.0 1e-119 MVQKKVLSVVLAGGEGKRLMPLTADRAKPAVPFGGTYRLIDFALSNLVNSRYREIVVLTQ YKSHSLDRHISETWRMSTLLNNYVASVPAQQRRGKDWFTGSANAIYQSMNLIHDARPDIV VVIGADHVYHMDFQQMVDQHIASGAKATVAAVRQPLELASSFGVIETDPQDRTRISAFVE KPETTPGLPDDPTQFLASMGNYVFDTDALVAALNQDEENPESNNDMGGDIIPLFVERGEA GVYDFTANEVPGGTAGKHYWRDVGTLDSYYDAHMDLVQPWPEFNLYNREWPLYTRQSVSP PAKLVRSSTRRPGSANDSILSQGVVISGGTVAQSVLSTDVRVQNEAWVEQSVLLDSVVIG EGAHVRNAILDKNVVVPPGARIGFDRAEDEANGYTVTESGLTVLSKGQPVPKPH >gi|289558067|gb|ADCD01000036.1| GENE 5 5736 - 6932 1008 398 aa, chain + ## HITS:1 COG:Cgl1093 KEGG:ns NR:ns ## COG: Cgl1093 COG0438 # Protein_GI_number: 19552343 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Corynebacterium glutamicum # 6 397 1 385 385 389 52.0 1e-108 MRIDIVSKEFPPSIYGGAGVHVAELTRVLASRVDVRVHAFGEPRDPDYHGARVLTYPNPP GFDAANGAVQTLATDLTILGDLEGADVIHSHTWYANLAGHLGKLLHEAPHVLSAHSLEPL RPWKAEQLGGGYALSSWAERTAYLGADAVIAVSDGMRRDILACYPDVDPAKVHTVHNGID TQVWTPQTGTAALEKYGIDPDKPSVAFVGRITRQKGVPHLLRAALRLPEDVQLVLCVGAP DTAELAHEVNGLIAELRRTRQGVVVIEGMIPRHEVMEILTAATVFACPSVYEPLGIVNLE AMACGTAVVASAVGGIPEVVQDGETGLLVPFEQVDDGTGAPVDEEGFAADFAAALTRVVE DPERARAMGEAGRARAIEHFSWETIAERTIEVYEAVLR >gi|289558067|gb|ADCD01000036.1| GENE 6 7008 - 9131 1912 707 aa, chain - ## HITS:1 COG:YGL205w KEGG:ns NR:ns ## COG: YGL205w COG1960 # Protein_GI_number: 6321233 # Func_class: I Lipid transport and metabolism # Function: Acyl-CoA dehydrogenases # Organism: Saccharomyces cerevisiae # 120 469 140 506 748 171 33.0 3e-42 MTVHEKLAPQSPTHSTEVPSDVAEIAPERPTPGSLDAAALEEALLGRWAAERRESRELAK DPALWRDPLLGMDEHRARVLRQLGVLVERNAVHRAFPREFGGEDNHGGNLAAFGDLVLAD PSLQIKAGVQWGLFSSAILHLGTAEHHRRWLPGAMDLSVPGAFAMTEIGHGSDVASIATT ATYDEATQEFVIHTPFKGAWKDYLGNAALHGRAATVFAQLITRGVNHGVHCFYVPIRDEK GAFLPGVGGEDDGLKGGLNGIDNGRLHFTQVRIPRTNLLNRYGDVAEDGTYSSPIASPGR RFFTMLGTLVQGRVSLSLAATTASFLGLHGALAYAEQRRQFNASDPQREEVLLDYQNHQR RLIDRLARAYADAFASNELVEKFDDVFSGRSDTDVDRQELETLAAAVKPLTTWHALDTLQ EAREACGGAGFLAENRVAQMRADLDVYVTFEGDNTVLLQLVGKRLLTDYSKEFGRLNVGA VSRYVVHQASDAIHRAGLHKVVQSVADGGSERRSANWFKDPAVQHELLTERVRAKTADVA GTLSGARGKGQAAQAEAFNTRQHELIEAARNHGELLQWEAFTRALEGITDETTKTVLTWL RDLFALRLIEDDLGWFVAHGRVSSQRARALRGYVNRLAERLRPFALELVEAFGLEPEHLR MAVATDAETQRQEEAHAWFTARRAAGEEPEDEKAVRAREKAARGRRG >gi|289558067|gb|ADCD01000036.1| GENE 7 9128 - 9712 423 194 aa, chain - ## HITS:1 COG:no KEGG:Mlut_11710 NR:ns ## KEGG: Mlut_11710 # Name: not_defined # Def: transcriptional regulator, TetR family # Organism: M.luteus # Pathway: not_defined # 1 194 44 237 237 273 98.0 2e-72 MEEIASHAGTSKTVYYRYFGDREGLRLAVSERVTAHMERRLLEVADEPVSEPEALRRMVE VYLTVAATSPEVYAFAVAPSPATAEAPVLGPFLERVYAVLESGLVRGMAARGHAPAPADP LALWPRAAVGLVRAAAETWLRTPAAGRIPVEAMARAIADWLLTGLLGAAPGASLEPAAAD ADRARPHSRTGASS >gi|289558067|gb|ADCD01000036.1| GENE 8 9961 - 11304 1255 447 aa, chain + ## HITS:1 COG:PA4785 KEGG:ns NR:ns ## COG: PA4785 COG0183 # Protein_GI_number: 15599979 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA acetyltransferase # Organism: Pseudomonas aeruginosa # 22 444 4 423 425 497 62.0 1e-140 MTHHETPASETASRPAVAGGALRPAVILGGNRIPFARANTAYAEVGNQEMLTATLDGLVA RFGLQGERLGQVTAGAVLKHPRNFNLTREAVLGSALSAATPAADVQVACATGMEALGTLA NKIRLGQLDSAIGGGVDSISDAPVSLSDGARRVLLQLNTAKTTKDRLRALAQLRPGQLVP EPAGAGEPRTGMSMGEHQALTTHKWGITRQAQDELAAASHRNLGAAYAAGYMDDLVTPFH GLARDNNLRPDSTPEKLAGLKPAFGRQLGDEATMTAGNSTPLTDGASAVLLSSEEWAAER GLPVLAEFVDMENAAVDFVDGHEGLLMAPAYAVPRLLARHGLTLDDLDFVEIHEAFAGTV LSTLAAWEDEEYCRERLGLPGALGSVDRARLNVHGSSLAAGHPFAATGGRIVALLAKMLH EKGEGSLGLISVCAAGGQGIVALLRGR >gi|289558067|gb|ADCD01000036.1| GENE 9 11337 - 12686 170 449 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 207 443 4 238 242 70 28 2e-11 MTDRYGTFVASPLGRRLTGALGLPQPVELRRHTPGDPVLPGSVLVLGATPAAEDARTLLA SWGLEVADAPREGARHAAIVACFDGVATPADLGAVALEIGGALRSLGSSSRVVTVFEDPE AATDPTLRAARQGVTGLTRSIAHEMRRGGTANGLVLGEGVPLTAPGAAGALAFLLSGRAA YVSGQFVPVATADGAVPADAARPLAGKVAVVTGAARGIGAAIVRTLARDGAAVVGVDVPA AGEALAEVVNEVGGTALALDITAPDAGARILEHCRTRHGRMDVVVHNAGITRDRMLANMD AARWDSVLAVNTTAQLAMNEAFLSEDARDVVGQGLRIVGLASISGIAGNRGQTNYAASKA GVIGLTAASAPVLAARGGTINAVAPGFIETEMTAKIPLATREVGRRLNALQQGGLPQDVA ETVAWLASDAAGGTNGATLRVCGQSKLGA >gi|289558067|gb|ADCD01000036.1| GENE 10 12689 - 13582 635 297 aa, chain + ## HITS:1 COG:PA4788 KEGG:ns NR:ns ## COG: PA4788 COG2030 # Protein_GI_number: 15599982 # Func_class: I Lipid transport and metabolism # Function: Acyl dehydratase # Organism: Pseudomonas aeruginosa # 6 259 8 249 285 118 35.0 1e-26 MQTTQLSAPPSLGRLYVRAAGRAATDAVVRRRRPRDLPDRQVVVTGHRIPAEAVTAWRGA VGSADPADLPSVLVHTQVFGAAMELMADPEFPLPLPGLVHLSNTVLHHRPVPAETALRVT ARAVGLVPHHAGTAVDVVVTVEGPGDDGGEALLWEGVSRYLAKGVHLSGLRPERPARLDF VPPTPTAQWRFGTGAGRRYAGVSGDWNPIHLTGVSARLFGMKGAIAHGMFLAARMLEGRE PAGAGFRWHIDFEAPVVLPTTVAVRYEPGPDGGTRVCGWDARRRRPHFSGEITPLES >gi|289558067|gb|ADCD01000036.1| GENE 11 13650 - 17108 2479 1152 aa, chain - ## HITS:1 COG:Cgl2245 KEGG:ns NR:ns ## COG: Cgl2245 COG1640 # Protein_GI_number: 19553495 # Func_class: G Carbohydrate transport and metabolism # Function: 4-alpha-glucanotransferase # Organism: Corynebacterium glutamicum # 3 713 1 702 706 511 42.0 1e-144 MALEAPALLHRLARAHGVQPEYVGQDGSAQTVPDEALVKVLAALGVSVRPDGVAALAEAV EEAETAPWRDVLPPTVAARSGHRLSVPCHVAAGEPVVARVRTEDGRTLEVSVSEPVSEVR LVDGVERERVHVQIPADLAPGWHRLEVTSGSGSTASAVLVCAPTRLSTPRPFLERRGWGA AAQGYSVTSADSWGIGDAADMASLAEIVARHGADFLLLHPLHAVEPGPHPADSPYSPVSR RFLSALVVHVPSIPEFADLPATEQAELRSAGARVQAELERTGRIDRAAVAAVLWPALRRV HEVPRSPEREAAYARFRAEAGPGLDDFALWSVLRLDGEGTGPDLADPAWAPGGVEAERVR AERATDVDLHRWVQWIAAEQLAGVQERARAAGMRMGVMVDLAVGATRETADAWMLGDVLV PTMSVGAPPELFNQLGQDWSQHPWHPRRLAETGYAAFRDMLRTVLRGAGGIRMDHVLGLF RLWWIPEGAGATQGAYVEYDHEAMLAVLTLEAERAGVVVVGEDLGTFEPWVQRRLAEAGV LGTSILWFEQEDGEPTPPERYRRLAMAAVNTHDLPPTAGYLEGVQVDLRERLGLYTVDVA QERRRSAEEVRAFLAAAARRGLLAEAEVDVPDAGPEVRERQIVALHRLLAQAPSALHSVA LVDAVGERRIQNQPGTLQDQYPNWTVPLGDGAGRMVSVEDLADSASAARLFDAVDAELRA SVPVGIGVSLHTSPLAQPGRGDAGGMNVYVRQAAVALARRGVRMILLTRAEEPVGPDGAR VRTLDAGGQAPPVTVVDLAAGPSAPVPKEELAGLGAEFTRAALDWLASDAVPGGPVLGGA DAPPVAFVHGHYWLSGSTAAALARAAHAPYLQTMHTTAAAKMLEDPALREPTARIEAERE VVERADLLVVNSAAEVADLRELLDVPRARTRVLPPGADLETFTPDGAAQWPGTPEDDGAL RVLFAGRVQRHKGPHLLVAALGVLRERAGGAGADPGVRLHVNGAASGDDELDLAGLAAQE GVADLVTFSAPVPAPALAAQFRAADVVAMPSASETYGLVALEAQACGTPVLAHRVGGLVY AVLDGVSGRHVTAGTPEAWADALAEILADRDAWAALGTGAVRHAAGHSWEAYADGLLEAV AAVPRRSPGLDA >gi|289558067|gb|ADCD01000036.1| GENE 12 17444 - 18769 1073 441 aa, chain + ## HITS:1 COG:MT2199 KEGG:ns NR:ns ## COG: MT2199 COG0624 # Protein_GI_number: 15841632 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Mycobacterium tuberculosis CDC1551 # 9 438 7 445 448 376 48.0 1e-104 MVENIVNPARSRPENRVVEICRDLIRIDTTNRGGNVSVGEPEAAEYCARLMAEAGMTPRF FESAPGRVSVVGHLPGWDPKAPGLVIHGHTDVVPAEADEWSVDPFGAELKDGMIWGRGAV DMKGMDAMVLAVLLHLARTGRRPRRPLTVAFFADEEAGGVYGARWVVDHHPEVFDGCTEA ISEVGGFSTEVHGSRAYLVQTAEKGLAWLNLTAEGAPGHGSAPHPDNAVTRLAGAMTRIG GHEWPLVYTKTTRALLEQVAEIMGVDFDETDPTPQLDALGQARSWVAGTLRTSSNPTGLT AGYKHNVIPSSATGTVDVRLIPGEEESALATIAELAGPDVTIEPEHRDVALETPFSGDLV ELMIASLQAEDPEAQVLPFMLGGGTDNKSLSRLGITGYGFAPMRLPADLAFTSLFHGIDE RVPVDALEFGCRVLERMLEPR >gi|289558067|gb|ADCD01000036.1| GENE 13 19154 - 19372 183 72 aa, chain + ## HITS:1 COG:no KEGG:RSal33209_2047 NR:ns ## KEGG: RSal33209_2047 # Name: not_defined # Def: hypothetical protein # Organism: R.salmoninarum # Pathway: not_defined # 1 66 15 80 104 67 59.0 1e-10 MSSDARMALEALTTALNEHLVAAQNKRGEDDPAVEAAFFAVADAFEAYEDALYADTEEVT PLDLFDDEDDDD >gi|289558067|gb|ADCD01000036.1| GENE 14 19442 - 20275 662 277 aa, chain + ## HITS:1 COG:AGc1833 KEGG:ns NR:ns ## COG: AGc1833 COG1968 # Protein_GI_number: 15888341 # Func_class: V Defense mechanisms # Function: Uncharacterized bacitracin resistance protein # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 1 277 3 276 278 312 62.0 4e-85 MTWIEAIILGLVQGLTEFLPISSSAHIRIVGEFLPSGADPGAAFTAITQLGTELAVLIYF WRDITRIIGRWCAAVTGRIPHSDPDARMGWLIIVGSIPIAVLGLLLQDWIDTEFRSLWIT ATMLIVFGVLLALADRLGRQTTPLEKLTVRDGVLYGLAQALALVPGVSRSGGTIAAGLAM GYTRPAAARYAFLLAVPAVFASGLYKLYTSLTDPGTQGPYGMGETLVATGIAFVVGYAVI AWLMRFISTHSFLPFVWYRILLGGVLFALLGAGVISA >gi|289558067|gb|ADCD01000036.1| GENE 15 20373 - 21608 954 411 aa, chain + ## HITS:1 COG:Rv2130c KEGG:ns NR:ns ## COG: Rv2130c COG0215 # Protein_GI_number: 15609267 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Cysteinyl-tRNA synthetase # Organism: Mycobacterium tuberculosis H37Rv # 1 410 12 414 414 360 51.0 2e-99 MPSRPDRLRLHDTATGRTRHPGNDAQRASLYVCGITPYDATHLGHASTYVAFDLLHRYWR AAGLEVAYVQNVTDVDDPLLERAEATGVDWRALAEEQTDLFRADMAALEVLAPGHYVGAT EAVGLVVDAVETMLAAGRAYRVPGGDGEPDGDVYFDVRAAQSATDWRLGQVSAMGLDEMA AVFPERGGDPDRPGKRDPLDPLLWRVHREGEPAWDGRSLGSGRPGWHIECSVISRAHLPA PFTVQGGGSDLRFPHHEFSAAHATAVDGLPLAHTYAHTGMVALDGEKMSKSLGNLELVSR LRARGVEPVAVRAAILAHHYRSDWEWSEQVLADAQARVARWRAALDGPHAAAGVAVLDAV HAALSDDLDAPRALEALDAWAAGTLPGLVEAAADPVPVIDVVAALLGLRLR >gi|289558067|gb|ADCD01000036.1| GENE 16 21631 - 22581 766 316 aa, chain - ## HITS:1 COG:no KEGG:Mlut_11820 NR:ns ## KEGG: Mlut_11820 # Name: not_defined # Def: ATP-grasp superfamily enzyme # Organism: M.luteus # Pathway: not_defined # 1 316 1 316 316 549 99.0 1e-155 MTDATSEDQPDDALGPLRTHLTATVDALEAGRRAPTVLLLAFEGWNDAGEAATGALGALR EQWDAADAGRVCDGEFYDYQVTRPLVRRDADGLGTLDWPAVALHEAFLDREGRPVAGEAA PPDGVRVLIAVGVEPNVRWRAFLEELFTAADARDVDAVVTLGALLADVPHTRPLRARPTS PLVDVRVAVGADRPVYEGPTGIIGVIADEAARRGLPSLSLWGTVPHYVAQAPSPKTLLGL VEAVEDLLHVSVSTRGLEDDARAWQRGVDELAAEDPDVAAYVRQLEEAQDTQQLPEASGE SIAREFERYLRGRGGR >gi|289558067|gb|ADCD01000036.1| GENE 17 22580 - 23413 667 277 aa, chain + ## HITS:1 COG:alr0288 KEGG:ns NR:ns ## COG: alr0288 COG0637 # Protein_GI_number: 17227784 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Nostoc sp. PCC 7120 # 49 236 6 191 222 75 32.0 1e-13 MAASLDTARRRGHGPRPARHTPAAALDRMHSMSRHPAPAPDDRARRLPRAVLWDMDGTLV DTEPLWNAVQRRLVIEHGGTWSDDLAASLVGRPLDEGARRLQEAGLDLPVQRIIDLTMDE VVQGVVNGVPWRPGARELLVALAEAGVPGALVTMSHAPLARALAERAPAGTLDVVVSGDM VSRGKPDPEAYRLGLRLLAERTPGLTAVDCVAVEDSPVGVGAAVAAGLPTVGVPSVLPLP AGLATVEWTTLAGRTPADLAAVRRIAAARGPGADGAG >gi|289558067|gb|ADCD01000036.1| GENE 18 23410 - 24537 857 375 aa, chain + ## HITS:1 COG:sll0528_1 KEGG:ns NR:ns ## COG: sll0528_1 COG1994 # Protein_GI_number: 16332077 # Func_class: R General function prediction only # Function: Zn-dependent proteases # Organism: Synechocystis # 6 247 14 251 251 100 31.0 3e-21 MSGPASVRLGTIAGAPVRLSWSWLLIAAVITLAFGPQIQRALPSLGGGAYAVALGYAVLL ALSVLAHEAAHALTGCAFGQRTEEIALTLWGGHTQFRSPSARPLDTVLTAMAGPTANLVL AGLAHLAARAVAGPSVPALLLEVTVWANLLLAAFNALPGTPLDGGRMVESAVWAATGSRA RGVEAAGWAGRVVAVGVLAAVLGPPILAGRAPDLFVVVLAAWVALTLWRGADDAVRHGRW SRRLETLRLEQVETPAVALPEHLGVAEALAQADDGRRAVVAVDGAGRPRGVLDLTAAVAL TPARRTTTPLAAVAVALAPEAVLVRDDVPASGPDLAARLADPQTPVWVLTDAHGLVRSVV PRETILAAVDATRRP >gi|289558067|gb|ADCD01000036.1| GENE 19 24554 - 25618 945 354 aa, chain + ## HITS:1 COG:Cgl1462 KEGG:ns NR:ns ## COG: Cgl1462 COG2519 # Protein_GI_number: 19552712 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA(1-methyladenosine) methyltransferase and related methyltransferases # Organism: Corynebacterium glutamicum # 12 285 5 277 278 273 52.0 4e-73 MTEPTGVSARRGPLRAGQRVQIKDAKGRLNTITLLPGGEFHSYQGVLRHDDLIGGFEGVV VENSAGQPYQVLRPLLNDFVLSMPRGATVVYPKDAAQIVQQADIFPGAVVVEAGVGSGAL SMSLLRAVGDHGRLHSYERRPEFADVARANVEAFFGAEHPAWSVHLGDAQEEMLTVHEPG SVDRVVLDMLAPWECLDAVAEVLAPGGVWLNYVATATQLSRVAEAIRDSGRFTQVEANET LVRGWHLDGLAVRPDHRMVAHTGFLLTARRLASGEEALRLKKRSKVSEFKAEDVEAWQPA DEARWTPEALGERPITGKKARKAAKEARLMAARSRAAEQGVDAYGGRTPTGEQD >gi|289558067|gb|ADCD01000036.1| GENE 20 25619 - 27373 1425 584 aa, chain + ## HITS:1 COG:MT2175 KEGG:ns NR:ns ## COG: MT2175 COG0464 # Protein_GI_number: 15841607 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ATPases of the AAA+ class # Organism: Mycobacterium tuberculosis CDC1551 # 28 579 26 587 609 441 45.0 1e-123 MDGAPVDHHAQSGTEHAEQRLAEARELLRQSQAEAERLRHQLQSAQRHAAGLSERRRAAE AQTQTAARNNRRMVELLEATRAEITTLKENLDAVTHPPFTFATLEAVHAPREPEEGVETG AVVRGGADVVQNGRRLRVTVSPLLDASRLTPGAQVLLDESSSIVGVAPGTGSGQLLRVKE ALPDGGLVLAGTADEERVVRRAPALEGVDLRHGDAVTVDARVEWALRRVELSEVDEVLLE EVPDVTFEDIGGLGPQIDRIREAVEIPFLHPEVYREHGLRAPKGIMLYGPPGTGKTMLAK AVANALSARSADGERSFFLNVKGPELLNKYVGETERQIRVIFDRAREKADAGFPVVIFFD EMESLFRTRGSGVSSDVETTIVPQLLTEIDGVEALENVIVIGASNREDMIDPAVLRPGRL DVKIRVDRPDAAGAAEIMAKHLTADVPLHADDVAAAGSADAARATLIARTVAALYDRGAD TALAELTDVSGTTHALHLADLVSGAVVADVVDRAKRHAVRDYLAAGQAPAALGVREGHLR EAVAAVLEDQTDLLATVAPAEWARTSGWRGPRLRSLRMVRGVEA >gi|289558067|gb|ADCD01000036.1| GENE 21 27370 - 29097 1331 575 aa, chain + ## HITS:1 COG:no KEGG:Mlut_11870 NR:ns ## KEGG: Mlut_11870 # Name: not_defined # Def: putative proteasome component/protein of unknown function, DUF275 # Organism: M.luteus # Pathway: not_defined # 1 575 1 575 575 1025 98.0 0 MSAFGRGTADGFARAAAVDVGPTPAFEGQRRLFHGAAVPPNGRDAAGWGVHRVMGTETEF GIHAPANPGAHHSVLSVELVNAYADLVTRSGSAVAGTEWDYTGESPLVDARGWRLPRSAA HPSQLTDEALVGPDGEPVHLLLSTVLANGARWYVDHAHPEYSSPETTTPRDAMVWDAAGD LVAQAAAEHIGQAEGAPEVLVYKNNVDGKGQSYGAHENYLVARSLDFEELTAVLLPFFAA RQVLVGAGRVGLGPAGERPGFQLSQRADYFEEPVGLETTIHRPIVNTRDEPHARPEAYRR LHVIIGDATLSQHATWLRMGMTALVLAMAEAGTAPRLTLDDPVAALQTISHDPGLRATVP LLEHTADGPVRRHWTGLQILRSYLDAARAHCAAFGVTDPQTHEVLEAWAIDLDDATADPL SLSDRADWAAKLRVLEGLRARAGADWTDPRLAMVDLQYADLRPARSLHRRLVAADALRTL ADEAEIRAAVATPPRATRAWTRGNLVGRHGDRVAGAAWETLLLRGAGERVHRLHLAEPLV GAAVDLPGWWEDAATPRPDDEALVATLPPLFGARA >gi|289558067|gb|ADCD01000036.1| GENE 22 29113 - 29706 456 197 aa, chain - ## HITS:1 COG:Ta1477 KEGG:ns NR:ns ## COG: Ta1477 COG3404 # Protein_GI_number: 16082442 # Func_class: E Amino acid transport and metabolism # Function: Methenyl tetrahydrofolate cyclohydrolase # Organism: Thermoplasma acidophilum # 5 195 15 213 217 86 28.0 3e-17 MIRDESIESYLGRLASGEPTPGGGATGALAVAEGAGLLAMAARFSAAEEDARSSEGLIAA CLGLADGDERGFGAVAEAFRLPRDTPEARSRRSAAIQAALAEAVRPPRGIVDAAERALDV AERVLDAANPNVLSDVGAALGCIRGGLTAAAVTLETNLGPLRDEGLEGILRTDVDRADRL VARADALLGRVRAAVTG >gi|289558067|gb|ADCD01000036.1| GENE 23 29747 - 30211 250 154 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|223038710|ref|ZP_03609003.1| 50S ribosomal protein L23 [Campylobacter rectus RM3267] # 1 153 1 143 149 100 37 1e-20 MRLWTLHPRHLDRQGLTGAWREALLAQAVLAGRTRGYRDHPQLLRFREHPDPSGAVGAFL SGIEAEATARGYRFDHSRIDRPCPVLDGAVRIPPAGLAPIPATTGQRDLEWRHLCAKLAA RSPAWLERWSDTPVPDVHPLFTIVPGPVASWERA >gi|289558067|gb|ADCD01000036.1| GENE 24 30281 - 31918 1013 545 aa, chain + ## HITS:1 COG:no KEGG:Mlut_11920 NR:ns ## KEGG: Mlut_11920 # Name: not_defined # Def: putative proteasome component/protein of unknown function, DUF275 # Organism: M.luteus # Pathway: not_defined # 82 544 1 463 464 825 98.0 0 MGGRGRSTPTRVDVRGGHHVPGADPPTPVRRRRRDRRRGGPGAREARGPGPGPGQPAGRD RLGAGVQRRGVRQGLRPEGRPVTDADRARRIFGLETEYGVQHWNPEGRPLSPEEVVRYLF RPVVEWGRSSNVFVANGSRLYLDVGSHPEYATAECSTLDELIASDGAGDLLLHDLVVQAE ERMAADGVGGRIHLYRNNADSSGSSYGSHENYLLRRRTEYRRLTEALVPFLVSRQILVGA GRVVPAGTWPEGEGPAHFAFSQRADFVQDGVSSSTTRSRPIINTRDEPHADASEYRRLHV IVGDTNLSEHTHLLRFGATDLLLRMIEAGFPLGDRVVASPTRAVRQISHDLTGTARIALR EGEASALELQEHYLERASAFVAAEGAHHDRVGEVLTLWGEVLDAVRTGDRSRIEDRIDWA IKLRLLEDYRARHDLGWEAPRLAQLDLAFHDIDPDRGLFRLLLRRGAVARLLPEDAARTA VETAPPTTRAHVRADFVARARERGLDYAVDWTTLKLTDHPLHAIVTKDPFDTSSAAVDRL FERIP >gi|289558067|gb|ADCD01000036.1| GENE 25 31956 - 33047 717 363 aa, chain + ## HITS:1 COG:Cgl0807 KEGG:ns NR:ns ## COG: Cgl0807 COG0545 # Protein_GI_number: 19552057 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: FKBP-type peptidyl-prolyl cis-trans isomerases 1 # Organism: Corynebacterium glutamicum # 238 354 3 118 118 89 44.0 1e-17 MSSFETPQPPTARRRRRLLPLLSLGAAGLMLATACATGDDGADQPHSDTASASTSAAPER AAVGEGQGEPDALTGVTFTEGDGGAPTVEIDGEIDTDQPTTRVLTAGEGEQVQEGDVLKM SIAVVDPASGEVVAENFSGEPEAVPVDDQLKSMNPEIHDMLVGNGAGTIVAAYSPEYDVS VPQTESASPSASPSTQRQPAQLFVYKIDAILPKQAEGEEVTERDERLPDVTVDEQSGRPS IAKPDGEAPQELVVQPLIQGEGREVGADDTVTVQYEGAKWSDGEVFDSSWETGQAITFSL NQVIEGWKEGLAGQKVGSRVLLSIPAEKAYGEQGSPPDIGENEPLLFVVDILDAQAPATE SAN >gi|289558067|gb|ADCD01000036.1| GENE 26 33080 - 33475 339 131 aa, chain + ## HITS:1 COG:NMA0273 KEGG:ns NR:ns ## COG: NMA0273 COG0545 # Protein_GI_number: 15793291 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: FKBP-type peptidyl-prolyl cis-trans isomerases 1 # Organism: Neisseria meningitidis Z2491 # 26 130 4 107 109 102 52.0 1e-22 MSFGQRDYDRTKPEIDFPGKTPPTELVVEDLIEGSGPAVEAGSRVQVHYVGVAWSTGEEF DASWNRGTPLPLTVGVGQVIAGWDQGLLGMKVGGRRRLEIPPHLGYGARGAGSAIGPNET LIFVCDLVSVD >gi|289558067|gb|ADCD01000036.1| GENE 27 33492 - 35591 1365 699 aa, chain + ## HITS:1 COG:ML1329 KEGG:ns NR:ns ## COG: ML1329 COG2378 # Protein_GI_number: 15827690 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Mycobacterium leprae # 15 330 7 324 331 98 32.0 6e-20 MTPPAPRRAGDEAAERIISLLWLLLSAPQGLERDRIRRQVVGYEGLTDAAFEKLFQRDRR VLRAVGVPLETLEPAGFDEGEAGVRHRVVRDALLLRDLDLTVDERRALVRARRLWGDSPL RADVVRAVGLLFQPATDLTGDDELAGYHTLMPRADPRLEALTQAVADEAVLRFPYRDARG RATRRTVRAWFLTLVRGRWYLTGWDLDRAAERSFRLTRMEGEPRRLERATDAPGRPEDHD HADLVARLAGQADAERVRVWLAPGRGQGVRAVGEPAEPRVEDGAAPGPDWELWEAPAGPR EDGLAAEIGGLLGCAVPSAAHLDLTDRVRAGLAAAAEAHAGPADPALLEVALAAPVRRRA RDSSEDLVGRLLDIVGLANRAGGVDRAELRARLGITDERLDADLETLRYCGMPERDFPGF QFEVAEVGGRVHVERAADLAGPVRLTRPEAHSLVAALQTVADLPVLDEADREAARSAQRR IRAAVLDAGAPDADDADDAALQEAEAHTAGEPPVAVAAHWDVAVDPATVRTLLAAVAERA VVHLTYRSVHADALTERDVEPLALVQDGARLYLQAWCRRAEDHRVFRVDRISAPAPTGET FAPRARPARWRVHPDDAAGVPVLLRWAHPVRDAAAGYRPDAQADLPDGDRLTRVHLTDAG VAAALVGRHGGAVEVLAPADLRASVADALDDALAALPAR >gi|289558067|gb|ADCD01000036.1| GENE 28 35629 - 35886 275 85 aa, chain + ## HITS:1 COG:no KEGG:Mlut_11960 NR:ns ## KEGG: Mlut_11960 # Name: not_defined # Def: twin arginine-targeting protein translocase, TatA/E family # Organism: M.luteus # Pathway: Protein export [PATH:mlu03060]; Bacterial secretion system [PATH:mlu03070] # 1 85 1 85 85 115 92.0 7e-25 MAGLQGWQLVIIILLAILLFAAPKLPAMARNLGQSMRIFSSEVKQMRTEGKGTTDERSGA GSTAADEPVEGRVVERDETDPRDPR >gi|289558067|gb|ADCD01000036.1| GENE 29 35907 - 36764 785 285 aa, chain + ## HITS:1 COG:Rv2093c KEGG:ns NR:ns ## COG: Rv2093c COG0805 # Protein_GI_number: 15609230 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Sec-independent protein secretion pathway component TatC # Organism: Mycobacterium tuberculosis H37Rv # 7 263 7 277 308 141 34.0 2e-33 MTEVDEVARRTRRRRKRRDNPTGEMPLREHLTELRNRLLKSALAVAVGMVIGFLVYQPVM AELYRPIKELSEQGYTAAIAYDTVASPFDIMLKISMFIGLILSSPVWLYQIWAFIVPGLK KSEKKYALGFIAAAVPLFVFGLALGWLVMPQAVQFFGGFTPDGGGILPTASVYISFVTRL YLAFGVAMVLPVLLVGLNMLGILPGRTIVHHWRITVFVIMLIAAIAAPGADAISMFYMAI PLVVLFGVAIVLCLWGDRRRDRRSGQREMDVEAELAAGPKPLDQI >gi|289558067|gb|ADCD01000036.1| GENE 30 36839 - 39829 2360 996 aa, chain + ## HITS:1 COG:ML1333 KEGG:ns NR:ns ## COG: ML1333 COG4581 # Protein_GI_number: 15827694 # Func_class: L Replication, recombination and repair # Function: Superfamily II RNA helicase # Organism: Mycobacterium leprae # 34 982 5 916 920 753 47.0 0 MAHHPASATPHDEPELSPAERYARARAARHHAGSELGRFAARVGFPLDDFQRRACAEVED GHGVLVAAPTGAGKTVVGEFAVHLALARGTKAFYTTPIKALSNQKHADLARVHGAENVGL LTGDTSVNPDAPVVVMTTEVLRNMLYAQSDTLIDLGFVVMDEVHYLADRFRGPVWEEVII HLPEHVQLISLSATVSNAEEFGAWLDTVRGATTVIVSEHRPVPLWQHVMAGGRLYDLFAE DIAFEDTADRDGEALLNPELKRLGEEAERRFQRADWGRPGRQQHRDGRGVGPKGRGRGGR RTGRDGGRGRNGSSALDRERPVSGRPGGHDGDPRRGPRLSTSRPEMIRALDRDGLLPCIT FIFSRTGCDAAVEQCLRAGLDLTTAREKALVAERVEEAARLLPVEDLEILGFWAWRDGLS RGFAAHHAGMLPPFKEAVEDLFAAGALKAVFATETLALGINMPARSVVIEKLVKFNGENH VDITPGEYTQLTGRAGRRGIDVEGHAVVMWRPGLDPAAVAGLASRRTYPLRSSFRPTYNM SANLLAQVGAERARGILESSFAQFQADRSVVGLAREVRSKQASLEKYEEAMQCHLGDFAE YLTLRKELAAAEKSGSQGRRRAHLAAVKDSLANLAVGDVVELDAGRALGRAVVVFPAGNP QNPRVGVVTDKAQLRRITVDDVAGPVEPVAGAALPQVVQVKTPTQRKDVAALMREAVRTG RPPAGGRRTAGFRLREDPAAPRVEELRRALRRHPCHGCQDREEHARWGDRWWAMRREVSV LRERIAGRTNTIARTFDRVVGLLRAYGYVQEDASSPRAALTERGEALRRIYGERDLFTSL VLQDPATDGLTPEEWAAVAALLVYQGKGETEPGLVPMPTPRLARVAEAAERIEERLRTDE AQARLEPTPRTDPGLVAPMHRWVRGATLRRTLEGADLAAGDFVRWARQVIDVLDQLANVP GDARRSRACRRAADLVSRGVVATSLPAASAPRADED >gi|289558067|gb|ADCD01000036.1| GENE 31 39849 - 40599 436 250 aa, chain + ## HITS:1 COG:no KEGG:Mlut_11990 NR:ns ## KEGG: Mlut_11990 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 249 1 249 361 336 94.0 5e-91 MSAHLLTRGIIHSTTDPYAQALLVRDGVIAWLGADDSADRVADPSDERRDLDGAVVVPVF VEPLARPADARDALSRGTAVVTVLAGPEDTGAAPADEDVQTVVYRHADRVDAEAAGVWLP VGTDTDPATLTGLLTASTQAGEQAYLVPDGGADAGPAAQDVALAALRSVAEEVGTAALGR VRHRLVVTHPVTAEDRAFLAAAGVSATVVPDADGVLHAPVASLLADAVSVCLGAGPAGDP WAAVRSALST Prediction of potential genes in microbial genomes Time: Thu May 26 07:12:18 2011 Seq name: gi|289558057|gb|ADCD01000037.1| Micrococcus luteus SK58 ctg1119142780290, whole genome shotgun sequence Length of sequence - 11040 bp Number of predicted genes - 9, with homology - 9 Number of transcription units - 5, operones - 3 average op.length - 2.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 3 - 687 334 ## Mlut_03930 hypothetical protein 2 1 Op 2 . - CDS 750 - 1493 528 ## COG2085 Predicted dinucleotide-binding enzymes 3 1 Op 3 . - CDS 1480 - 2382 809 ## COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) 4 2 Op 1 . + CDS 2520 - 3491 741 ## COG4989 Predicted oxidoreductase 5 2 Op 2 . + CDS 3550 - 4008 361 ## Mlut_03970 hypothetical protein + Term 4021 - 4064 1.1 6 3 Op 1 4/0.000 + CDS 4070 - 6550 1836 ## COG3280 Maltooligosyl trehalose synthase 7 3 Op 2 . + CDS 6547 - 8538 1470 ## COG0296 1,4-alpha-glucan branching enzyme 8 4 Tu 1 . - CDS 8552 - 9853 1054 ## Mlut_04000 hypothetical protein 9 5 Tu 1 . + CDS 9961 - 10833 594 ## COG1651 Protein-disulfide isomerase + TRNA 10944 - 11020 85.6 # Thr TGT 0 0 Predicted protein(s) >gi|289558057|gb|ADCD01000037.1| GENE 1 3 - 687 334 228 aa, chain - ## HITS:1 COG:no KEGG:Mlut_03930 NR:ns ## KEGG: Mlut_03930 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 208 1 208 519 298 97.0 1e-79 MTRPTHRTARRTLTAVALSAAALTGPAAAATVVALPVTAGVTSAVVAAAPQAHAVAWDRV ELVDDAGVIDPAQLRRDLAGIEFREPTRVAVVTERGPDLSALDDDRASQAFNGRVLERAR AEHPDWLSADGQKWADGLVIVALDPDNRLIGVYVGEDRMLSTDQLRDVREAGHEAARAAR WTDTVVEVTDAAAELIGRPWWQAPELWFGAGIVGVAGGGAAAAVLASR >gi|289558057|gb|ADCD01000037.1| GENE 2 750 - 1493 528 247 aa, chain - ## HITS:1 COG:Cgl2780 KEGG:ns NR:ns ## COG: Cgl2780 COG2085 # Protein_GI_number: 19554030 # Func_class: R General function prediction only # Function: Predicted dinucleotide-binding enzymes # Organism: Corynebacterium glutamicum # 17 229 8 193 208 62 31.0 7e-10 MSSSEAAAPAHALPRVVGILGAGRAGTALARAIARIPRLSPGTAAPRVMVAGTRRPAAVQ RHLTIYAPEAVAVSAEDLAAEAELVVVAVPREALDDVDPLALAGPATRAVVDLTNTWGDE PVPAWLDDDAAPGTTRIAERWAAAGLRVPVVRAFSEISHHDLGDAGRATAPRRALAVGTE PADATADPAAVAAARDTVIALVTAMGFDAVPYTGLDRAGVLEPGAAGFGTAHDAGRLAAL LADAPTG >gi|289558057|gb|ADCD01000037.1| GENE 3 1480 - 2382 809 300 aa, chain - ## HITS:1 COG:Cgl2964 KEGG:ns NR:ns ## COG: Cgl2964 COG0179 # Protein_GI_number: 19554214 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) # Organism: Corynebacterium glutamicum # 1 300 1 277 279 186 39.0 4e-47 MKLATFRQPDSDAAYPGATFAAVITSVHPEDPEVAVRAVALPDCRDVGEYLTATPEEQRE MVEGALRAAQADRSLLLDTSGLVYDTLVPFPTKVFCVGLNYTNHIDETGLERPEHPTLFA KFPQSLTGALDPIEVPEEDHRVDYEGELCIVVGEPGRRIAVEDAPEHIAGYAVANDISMR GFQGRTSEWLQGKVWEASTPVGPWLVTPDEFPADARVLTHVNGELRQEDRVADVVFSPAE LVSYASQLITLNPGDLILTGTPAGVALARRDAEGRRPWLRPDDVVEVEITGLGRQRNELV >gi|289558057|gb|ADCD01000037.1| GENE 4 2520 - 3491 741 323 aa, chain + ## HITS:1 COG:lin0643 KEGG:ns NR:ns ## COG: lin0643 COG4989 # Protein_GI_number: 16799718 # Func_class: R General function prediction only # Function: Predicted oxidoreductase # Organism: Listeria innocua # 33 323 29 305 305 134 29.0 3e-31 MAWGSVPPPPPDADPGAGPEGPAGDAQVEAAVERARRALRAGIEAGVDLLDTADIYGAGR SEETVGRLLHELPYEERSALKVQTKCGIVLHETDPAGRRLTRYDSSPEHVRASLEGSLAR LGEQRVDTLIIHRPDVLTPVADTVRAFLDAREAGLVGKLGVSNLGVGRVLEFQRELESQA ADGTGLACVQVELGLHHRTLVEAVVLANHPDAPADADAGRLGPVCAAEGIELQAWGPLGQ GRFSSGDDGAAGVVGEVAAELGVSREAVVLAWLLRLPWGVRPVIGTQDPERVAACAEAAA AAEAMDSAQWHRLWTAARGAGLP >gi|289558057|gb|ADCD01000037.1| GENE 5 3550 - 4008 361 152 aa, chain + ## HITS:1 COG:no KEGG:Mlut_03970 NR:ns ## KEGG: Mlut_03970 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 150 1 150 161 164 60.0 8e-40 MDFANVDLVTPWILYWLASLTLVVGGTLVVVGLWRARRHRRFAATHGRNPEIGLLEDTRT QRGVGVVALAAAVALGATGAVLHVQGLDAFRGNLEAKYGYTAVDRIRQSGPGFVADLTQA DGSVLRDEMILLESSGEPVVGEDIFARPVETR >gi|289558057|gb|ADCD01000037.1| GENE 6 4070 - 6550 1836 826 aa, chain + ## HITS:1 COG:Cgl2066 KEGG:ns NR:ns ## COG: Cgl2066 COG3280 # Protein_GI_number: 19553316 # Func_class: G Carbohydrate transport and metabolism # Function: Maltooligosyl trehalose synthase # Organism: Corynebacterium glutamicum # 7 812 3 804 811 486 39.0 1e-137 MSTSTVRPAPASTYRLQVSPDLPLESAAGLVPYLRRLGVDWLYLSPLLEAEPGSDHGYDV VDPTRLDAARGGAEGLDAVARAAHEAGMGVLVDIVPNHVGVATPQANPAWWDVLTHGPEA AHAAWFDVDWPAGDGSLLIPVLGDGPDGDADAELDRLVVDAEGGRLRYWDTVYPLAPGSL EAAEAETGLRAAEVFAAADPAKEPTAEQARLARAVHDRQHYRLVGWRRGDAELNYRRFFT VTTLAGVRVDEPEVFDAVHTEPARWVREGLVDGLRVDHPDGLADPAGYARRLRSHVLPEG YLVVEKILEPGEALPADWPVDGTTGYDALGEVERVFMHPEAAGDAAEDARRRREWDEAVV RAKHDVATGSLAAETARLVREVRAVHALGAHPDEDVAAAFAAVLARLPVYRTYLPVGLAV LEGALADAAAAEPGLADVLGDLRPELTDPDSPVARRFQQTSGMVMAKGVEDRSFYRYTRW ANLNEVGGDPSHVALSLADFHSAQQARQAAWPTAMTTLSTHDTKRGEDVRARIAVLAEEP DRWAAELAELTRLHPLGHPDAERLLWESIVGVWPTDGTAPEEERILGFLQKASREAALAT SWTDQDPEFEARLAALAAAVTSPEGPARGVLQAVADRIAEPGLVVQLGHKLVQLAAPGVP DVYQGTEVPFPTLVDPDNRRPVDFAARADLLDRLDAGHTPGLDDPAAAKLAVVAAVLRAR RDRPELFTGHRPLDVSGPAADHAIAFDRGGALAVTTRWPVRLAAAGGWGETVVTVPAGRW EDAVTGHPVHPDARGAVRLDELLSTLPVALLVPAHAPSDRRERTAP >gi|289558057|gb|ADCD01000037.1| GENE 7 6547 - 8538 1470 663 aa, chain + ## HITS:1 COG:MT1613 KEGG:ns NR:ns ## COG: MT1613 COG0296 # Protein_GI_number: 15841029 # Func_class: G Carbohydrate transport and metabolism # Function: 1,4-alpha-glucan branching enzyme # Organism: Mycobacterium tuberculosis CDC1551 # 10 626 2 574 609 468 46.0 1e-131 MTEPRPADAPAPGLHPIGSDPVDPAAAERAAVDAARAVPYAVWAPHAESVDLVLVDTEPG ALHDAEDRWPVAAVVAMDPAAGGWWTPTEDPLAALCLDAAQPPADPGYGYRVDGADPVPD PRSRRQPDTVHGPSRRDVAGRAVAWPDEGWAGPPGVESDPTAPQGGGLRGAVLYELHVGT FTAEGTLDAAIARLPHLTDLGVTHVELLPVNSFSGPRNWGYDGVAWFAVDESYGGPAAYR RFVAAAHAAGLGVVQDVVHNHLGPSGNYLPVFGPYLGPGGTGWGDGLNLDGADSDEVRRF VLDNVRFWLEEMRVDGLRLDAVHALRDARAVHLLEEMAALADGIAARAGRPVPLLAESDL NDPRLVLPRQAGGLGLAAAWNDDVHHALHVAATGETHGYYADFAPLEAVAKVMERTYFHD GTRSTFRSRDHGRPVPDAVPNHAWVASIQNHDQVGNRAGGDRTAAALSEGALAAEAALLL TGPHVPMLFMGEEFAASTPWPFFTSFREPELGDAVRQGRRREFAAHGWDPADVPDPQDPA TRDAAVLDWAEAAGGADGQGRGVRVLAAYRTLIGLRRTLPQLTDPRRDRVRAEVDAARRH VRLTRAGADADVVLLVALGAEPLPVPADLTRAELLAGHGDDGPLGPGTVPAAVPAPGFLL LRR >gi|289558057|gb|ADCD01000037.1| GENE 8 8552 - 9853 1054 433 aa, chain - ## HITS:1 COG:no KEGG:Mlut_04000 NR:ns ## KEGG: Mlut_04000 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 433 1 433 433 725 98.0 0 MDTVETPSPVDRLTITGAPSGDATEDPATSLLALPWALPLETWPREVLAALPRGISRHVV RFARMGGGIVAVKETTEELAFHEYRLLRRLERSPAPSVVPVAVVTGRTEDDGTPLPAALV TRHLRFSLPYRAVFSERLERRTLVRLMDALATLLVELHLEGFFWGDVSLSNVLFRRDAGG FAAHLVDAETGELRERLSNGQREHDLDVAAVNVGGELLDLQASGLLDPEVDPVTTPDLLV ASYRRLWDELTGPLLFPRAEPWRLDRRVRRLQELGFELAEYSLRAADAPGMMIARPVEIH AGYHRRRLTRLTGLEVQENQARRLLVDIEAARREWDPYMDIEGAAHRWVVEVFDPVVRSV PLELRAKLEPAEVMHQLLEHRWYLSEARGQAVPLQEVVDSYVDTVLRARRDEDAVALHPT TTMLRAVPPADED >gi|289558057|gb|ADCD01000037.1| GENE 9 9961 - 10833 594 290 aa, chain + ## HITS:1 COG:ML1667 KEGG:ns NR:ns ## COG: ML1667 COG1651 # Protein_GI_number: 15827883 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Protein-disulfide isomerase # Organism: Mycobacterium leprae # 132 271 92 233 264 82 33.0 7e-16 MARNTSGSHTSATDARARARQIQEEQRRKDRRRRTGVIWGSVLAAVLVIGLVVAFALTRN GDDAAAAGPIPAAANEQGGIELTSATGLAEGAGEREVDPSKIEVPKQAESSQPETLPNTE ARGDGEPTRIVLYADFNCVHCADFESSNAEQIEQWLEQGEVTVDYRMVDFLSAPNNQNYS ARAANAAYCVADQKPEAYNGFVTALFAAYDEHQGKGLDNAALIQLAQEHGVDISSCVEDG TFRSAVEHTTRQARVAGVAGTPTVFVDGKNWALDGEDKTFTDWAGAKIAG Prediction of potential genes in microbial genomes Time: Thu May 26 07:12:37 2011 Seq name: gi|289558050|gb|ADCD01000038.1| Micrococcus luteus SK58 ctg1119142780329, whole genome shotgun sequence Length of sequence - 12168 bp Number of predicted genes - 5, with homology - 4 Number of transcription units - 3, operones - 2 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 13/0.000 + CDS 83 - 1072 994 ## COG4120 ABC-type uncharacterized transport system, permease component 2 1 Op 2 . + CDS 1065 - 1856 218 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 3 2 Op 1 4/0.000 + CDS 1959 - 4058 1629 ## COG0366 Glycosidases 4 2 Op 2 . + CDS 4099 - 6426 2043 ## COG0296 1,4-alpha-glucan branching enzyme + SSU_RRNA 7184 - 8685 99.0 # AJ717368 [D:1..1502] # 16S ribosomal RNA # Micrococcus luteus # Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Micrococcineae; Micrococcaceae; Micrococcus. 5 3 Tu 1 . - CDS 8757 - 9026 71 ## - Prom 9108 - 9167 36.8 + LSU_RRNA 9128 - 12168 99.0 # X06484 [D:1..3094] # 23S ribosomal RNA # Micrococcus luteus # Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Micrococcineae; Micrococcaceae; Micrococcus. Predicted protein(s) >gi|289558050|gb|ADCD01000038.1| GENE 1 83 - 1072 994 329 aa, chain + ## HITS:1 COG:Cgl2197 KEGG:ns NR:ns ## COG: Cgl2197 COG4120 # Protein_GI_number: 19553447 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Corynebacterium glutamicum # 1 278 1 278 296 283 65.0 3e-76 MLTAVELGLIYAVVALGVYLTFRILDFPDLTVDGSFTTGAATAAVLITGGTPVPLAMLAA FVAGALAGLVTGLLHTKGRIDGLLAGILTMIALYSINLRIMGKANIPLLGQDTLFTWLGD LGLARNWGSILVLFLGVFVVKLILDWFLHTDLGLALQATGDNEEMIRSYGVSTDRMKILG LMISNGLVALGGSLLAMYQGFADISMGIGLILVGLASVIVGQAVFGQRTVFWATLAVIVG AVLYRLIIQFALNAGLSPNDMKLISAALVVVALLLPRFGFAKRLSLRTRGTAATPGPAAA APATAGMPLTGEPGGATPAASVPEEAPRA >gi|289558050|gb|ADCD01000038.1| GENE 2 1065 - 1856 218 263 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 235 1 225 245 88 29 2e-17 MLEISQVSKTFFPNTVNERRALQGIDLHLAEGDFVTVIGSNGAGKSTILNTIAGKLLPDT GTVAVSGKDVTRMPDHRRAASIGRVFQDPTAGTAPNLTIEENMALAWRRGHARGLSRGVS RARRATFRDELTKLELGLENRLTAKVGLLSGGQRQALSLLMATFSGPKILLLDEHTAALD PSRAELVTRLTRQVVAEHRLTTLMVTHNMSQALEVGNRLIMMHDGRIILELDEQEKAGRT PADLLAEFAKIKGAVVDDKTMLS >gi|289558050|gb|ADCD01000038.1| GENE 3 1959 - 4058 1629 699 aa, chain + ## HITS:1 COG:Cgl1197 KEGG:ns NR:ns ## COG: Cgl1197 COG0366 # Protein_GI_number: 19552447 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Corynebacterium glutamicum # 21 693 1 652 675 602 50.0 1e-171 MSTVKPDTQSATAADVRLQTVTGRIPVTDVQPVVLDGRFPAKAVVGEDIPVRATVFREGH DSVRATVRLLDPAGAEVQRVQMRPGRPGLDEVVATLRPAEPGLHQFVVEGWDDPVGTWKH AATVKIAAGIDVELMLAEGAALFRRAAEDAERSAEDRAVFEEVVRGLEDESLIPVQRLAS AESAEVSAVLHARPVREHLTSSELYPLDVQRELAGRGAWYEFFPRSEGARFDEASGTWSS GTFATAARRLPAVARMGFQVAYLPPIHPIGTSHRKGPNNTLTAGPQDPGSPWAIGAPEGG HDAVHPDLGTVEDFEAFVATAADEGLEVALDLALQCSPDHPWVAAHPEWFTTRVDGTIAY AENPPKKYQDIYPLNFDNDPDGLAQAVLDVVRGWVARGVHIFRVDNPHTKPLWFWEWLIA KVRAEEPRVVFLAEAFTRPAMMHALGKVGFQQSYGYFTWRNTAEELAEYLQEISHETPAF YRPNLFVNTPDILTEYLQHGGPGAFRIRAVVAATASPLWGVYAGFELFEHVARPGAEEYI DNEKYEYRPRDWEGAEAAGASLAPYLTRLNEIRAAHPALGDLQNLTLHASTHPDLLVFSK TRSARPEGAHRDAEAVTDAGPAEDTLIVVVTMNPHDVVEATLDLDLEALRLRPEDRDASG AVEVEDLLTGQRWQWGRTPYVRLDPNVEPAHVLRVVRNG >gi|289558050|gb|ADCD01000038.1| GENE 4 4099 - 6426 2043 775 aa, chain + ## HITS:1 COG:Rv1326c KEGG:ns NR:ns ## COG: Rv1326c COG0296 # Protein_GI_number: 15608466 # Func_class: G Carbohydrate transport and metabolism # Function: 1,4-alpha-glucan branching enzyme # Organism: Mycobacterium tuberculosis H37Rv # 14 767 12 730 731 788 55.0 0 MTPSAAPRPAAAPLAVDPEVLAAVAQGRHHDPHTVLGAHPHPDGAAVTYRVLRPLARTVT VVRAGDGQRVELTHEHDGVFAGVAPTPRVAGAAAGDYRVEVAYETEDGTTGPVQEQDDAY RHLPTLGELDLHLIGEGRHERLWEVLGARVVRTSADEAVGTAFAVWAPNARAVRVVGDHN GWDGRTHAMRSLGSSGVWELLAPGIGHGDRYKFEILGRDGLWRQKADPLARWTEVPPATA SRVLESDYAFGDRTWMERRRVTDPHERPLSIYEVHLGSWRPGLDYRELAEQLVEYVQWLG FTHVEFLPVAEHPFGGSWGYQVTGYYAPTSRFGSPDEFKHLVDALHRAGIGVIVDWVPAH FPKDEWALARFDGTALYEHPDPRRGEHPDWGTLVFDFGRTEVRNFLVANALYWLGEFHID GLRVDAVASMLYLDYSREDGQWEPNVHGGNHNLEAIDFLREVNATVYRLHPGVHMIAEES TAFSGVSAPVDAGGLGFGKKWNMGWMHDTLAYLSQDPVNRRWHHGQWTFSMVYAYSENYV LPLSHDEVVHGKGSLLGRIPGDRRQQLATLRAYYGYMWAHPGKQLLFMGGEYAQPSEWSE GEGLDWPVSWDEAHRGVQLTIRELNALYRSKPALWSLDHSPEGFAWVDGGDADGNTLVFL RMPAAQVVPEQRIDDGDAVPAAEPGGAPLLCITNLSGSPRQGLRVGVPSAGEWTVVLDTD AIDFHGDGWREQTGQSEVIAAHEGQWQGQPAHVTVNVPALTTLWLQPHPDSTVTP >gi|289558050|gb|ADCD01000038.1| GENE 5 8757 - 9026 71 89 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MQQQKIRCSRPLCSSQTTTHTLSTNPQGQLHKVRRPETTTPTPRPGCLLFQDPTVCQRQL AATNTTHSNHTHKGMTYSSTAGTTTGTIH Prediction of potential genes in microbial genomes Time: Thu May 26 07:13:10 2011 Seq name: gi|289557977|gb|ADCD01000039.1| Micrococcus luteus SK58 ctg1119142780335, whole genome shotgun sequence Length of sequence - 72042 bp Number of predicted genes - 70, with homology - 67 Number of transcription units - 34, operones - 12 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 8 - 178 75 ## Mlut_15390 hypothetical protein 2 2 Op 1 . - CDS 359 - 703 146 ## Mlut_15400 hypothetical protein 3 2 Op 2 . - CDS 700 - 1503 633 ## COG1611 Predicted Rossmann fold nucleotide-binding protein 4 3 Op 1 16/0.000 + CDS 1592 - 2416 556 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 5 3 Op 2 31/0.000 + CDS 2464 - 3357 828 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 6 3 Op 3 17/0.000 + CDS 3463 - 4143 629 ## COG0765 ABC-type amino acid transport system, permease component 7 3 Op 4 . + CDS 4125 - 5027 725 ## COG0765 ABC-type amino acid transport system, permease component 8 3 Op 5 . + CDS 5125 - 7236 1181 ## COG2171 Tetrahydrodipicolinate N-succinyltransferase 9 4 Tu 1 . - CDS 7460 - 7873 201 ## 10 5 Tu 1 . + CDS 7685 - 8242 289 ## Mlut_15480 hypothetical protein 11 6 Tu 1 . - CDS 8339 - 9625 1287 ## COG0372 Citrate synthase 12 7 Op 1 4/0.000 - CDS 9774 - 10925 1154 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase 13 7 Op 2 . - CDS 10932 - 11258 359 ## COG1146 Ferredoxin 14 7 Op 3 . - CDS 11255 - 11821 264 ## Mlut_15520 hypothetical protein 15 7 Op 4 . - CDS 11814 - 13724 1973 ## COG1217 Predicted membrane GTPase involved in stress response 16 8 Op 1 13/0.000 - CDS 13839 - 15719 851 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 17 8 Op 2 49/0.000 - CDS 15716 - 16867 1011 ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 18 8 Op 3 38/0.000 - CDS 16873 - 18423 1176 ## COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 19 8 Op 4 1/0.133 - CDS 18556 - 20415 1775 ## COG0747 ABC-type dipeptide transport system, periplasmic component 20 9 Tu 1 . - CDS 20650 - 22128 922 ## COG1233 Phytoene dehydrogenase and related proteins 21 10 Tu 1 . + CDS 22152 - 22982 668 ## COG0428 Predicted divalent heavy-metal cations transporter 22 11 Tu 1 . - CDS 22998 - 24056 795 ## COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain 23 12 Tu 1 . + CDS 24251 - 25666 967 ## COG4667 Predicted esterase of the alpha-beta hydrolase superfamily 24 13 Tu 1 . - CDS 25691 - 26362 438 ## COG4125 Predicted membrane protein 25 14 Tu 1 . + CDS 26361 - 26879 537 ## COG1528 Ferritin-like protein 26 15 Tu 1 . + CDS 27026 - 27979 796 ## COG2354 Uncharacterized protein conserved in bacteria 27 16 Tu 1 . - CDS 28106 - 28843 684 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) - Prom 28983 - 29042 1.5 28 17 Op 1 . + CDS 28661 - 28996 119 ## 29 17 Op 2 . + CDS 29066 - 29800 515 ## COG1051 ADP-ribose pyrophosphatase 30 17 Op 3 9/0.000 + CDS 29828 - 31156 1024 ## COG0379 Quinolinate synthase 31 17 Op 4 1/0.133 + CDS 31153 - 32073 463 ## PROTEIN SUPPORTED gi|163755345|ref|ZP_02162465.1| 30S ribosomal protein S6 32 17 Op 5 . + CDS 32136 - 33242 842 ## COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes 33 17 Op 6 . + CDS 33320 - 34990 1405 ## COG3540 Phosphodiesterase/alkaline phosphatase D 34 18 Op 1 13/0.000 - CDS 35065 - 36072 799 ## COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) 35 18 Op 2 24/0.000 - CDS 36069 - 36821 666 ## COG1174 ABC-type proline/glycine betaine transport systems, permease component 36 18 Op 3 24/0.000 - CDS 36818 - 37825 773 ## COG1125 ABC-type proline/glycine betaine transport systems, ATPase components 37 18 Op 4 . - CDS 37822 - 39603 742 ## COG1174 ABC-type proline/glycine betaine transport systems, permease component 38 19 Tu 1 . + CDS 38692 - 39993 1204 ## COG1301 Na+/H+-dicarboxylate symporters - Term 39891 - 39933 -0.5 39 20 Tu 1 . - CDS 40067 - 41548 1304 ## COG0477 Permeases of the major facilitator superfamily 40 21 Tu 1 . + CDS 41787 - 43523 1130 ## COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains 41 22 Op 1 . + CDS 43655 - 45100 1058 ## COG0477 Permeases of the major facilitator superfamily 42 22 Op 2 . + CDS 45093 - 45548 120 ## COG1186 Protein chain release factor B 43 23 Tu 1 . - CDS 45573 - 47039 961 ## COG1680 Beta-lactamase class C and other penicillin binding proteins 44 24 Tu 1 . + CDS 45960 - 47927 774 ## 45 25 Tu 1 . + CDS 48224 - 49354 796 ## COG3268 Uncharacterized conserved protein 46 26 Op 1 . - CDS 49383 - 51035 1408 ## COG0661 Predicted unusual protein kinase 47 26 Op 2 . - CDS 51046 - 52503 992 ## COG1085 Galactose-1-phosphate uridylyltransferase 48 26 Op 3 . - CDS 52472 - 53482 895 ## COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases 49 27 Tu 1 . + CDS 53670 - 55184 1318 ## COG0427 Acetyl-CoA hydrolase 50 28 Tu 1 . - CDS 55300 - 55725 332 ## Mlut_15890 hypothetical protein 51 29 Tu 1 . + CDS 55794 - 56744 610 ## COG1846 Transcriptional regulators - Term 56495 - 56535 2.2 52 30 Op 1 . - CDS 56777 - 57583 643 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) 53 30 Op 2 . - CDS 57610 - 58620 862 ## COG2130 Putative NADP-dependent oxidoreductases 54 30 Op 3 . - CDS 58665 - 59348 648 ## COG0693 Putative intracellular protease/amidase 55 31 Tu 1 . - CDS 59463 - 61115 1476 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains 56 32 Op 1 . + CDS 61326 - 62414 974 ## Oant_4800 hypothetical protein 57 32 Op 2 . + CDS 62468 - 63163 639 ## Oant_4801 hypothetical protein 58 32 Op 3 . + CDS 63165 - 64571 1229 ## COG2837 Predicted iron-dependent peroxidase 59 32 Op 4 . + CDS 64571 - 64957 298 ## Arch_0533 hypothetical protein 60 32 Op 5 . + CDS 64989 - 65714 502 ## COG0406 Fructose-2,6-bisphosphatase 61 32 Op 6 . + CDS 65711 - 66253 437 ## Mlut_16020 hypothetical protein 62 32 Op 7 . + CDS 66253 - 67035 514 ## Mlut_16030 hypothetical protein + Term 67058 - 67090 0.7 63 33 Op 1 . - CDS 67059 - 68903 764 ## COG3004 Na+/H+ antiporter 64 33 Op 2 . - CDS 68990 - 69556 537 ## COG3663 G:T/U mismatch-specific DNA glycosylase 65 33 Op 3 6/0.000 - CDS 69558 - 69812 133 ## COG4115 Uncharacterized protein conserved in bacteria 66 33 Op 4 . - CDS 69813 - 70073 235 ## COG2161 Antitoxin of toxin-antitoxin stability system 67 33 Op 5 . - CDS 70054 - 70326 70 ## gi|289705295|ref|ZP_06501694.1| hypothetical protein HMPREF0569_1884 68 34 Op 1 6/0.000 + CDS 70462 - 70812 92 ## COG3293 Transposase and inactivated derivatives 69 34 Op 2 . + CDS 70712 - 71323 299 ## COG3293 Transposase and inactivated derivatives 70 34 Op 3 . + CDS 71320 - 71730 168 ## KRH_00540 putative oxidoreductase Predicted protein(s) >gi|289557977|gb|ADCD01000039.1| GENE 1 8 - 178 75 56 aa, chain - ## HITS:1 COG:no KEGG:Mlut_15390 NR:ns ## KEGG: Mlut_15390 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 56 1 56 56 94 100.0 1e-18 MAAMKPRTGDGPMEVTKEGRSLIMRVPIDGGGRLVLEINADEARELKECLEGVIQA >gi|289557977|gb|ADCD01000039.1| GENE 2 359 - 703 146 114 aa, chain - ## HITS:1 COG:no KEGG:Mlut_15400 NR:ns ## KEGG: Mlut_15400 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 114 1 114 114 140 98.0 2e-32 MSGPQWIVLVAVLVVVLAALAAALAGRLTLRADDPAGRTPGHPVLLPERPRAADVDLLRL AVAVPGYQRDQVDAVLLRLRDALAQREDEVTALRTRVAELEAADPSRSDPAGRA >gi|289557977|gb|ADCD01000039.1| GENE 3 700 - 1503 633 267 aa, chain - ## HITS:1 COG:Cgl1086 KEGG:ns NR:ns ## COG: Cgl1086 COG1611 # Protein_GI_number: 19552336 # Func_class: R General function prediction only # Function: Predicted Rossmann fold nucleotide-binding protein # Organism: Corynebacterium glutamicum # 35 259 28 243 256 235 54.0 8e-62 MASHEHPSGGDVAAAPPRVRRGGQILRGEAAHTPTFDQLLLDGRRPGDAARPAADVTSTT SEAWRVLRIQAEFVEGFGTLAGLGPAVSVFGSARTPEGSAGYALAHEVGSRLAQAGYTVI TGGGPGTMAAANRGAHEAGGESVGLGIELPFETGLNPWVHVGVDFRYFFVRKVMFLKYAQ GFIVLPGGLGTLDELFEALTLVQTGTVTRFPVVLVDRGFWSPLVDWIRGTLVERGMISPE DPDLFHLVDTAEEAVACVLRSAGRADA >gi|289557977|gb|ADCD01000039.1| GENE 4 1592 - 2416 556 274 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 31 271 1 242 245 218 46 6e-56 MTQITPEQPHGAHLPDEAGTRRRRGAAGDDLIVLEGVNKHFGDFHALRQIDLRIPRGQVA IVLGPSGSGKSTLCRTINRLETIDDDGGRILIDGRPLPTEGRQLAQLRAEIGMVFQSFNL FAHKSILENVTLGPIKVKGKRRADAERHAMELLERVGVAQQAKKMPAQLSGGQQQRVAIA RALAMEPKALLFDEPTSALDPEMVQEVLDVMVQLAEGGMTMVVVTHEMGFARKAGDRVVF MADGAILEDTDPDTFFTNPRHERAQDFLGKILAH >gi|289557977|gb|ADCD01000039.1| GENE 5 2464 - 3357 828 297 aa, chain + ## HITS:1 COG:Cgl1906 KEGG:ns NR:ns ## COG: Cgl1906 COG0834 # Protein_GI_number: 19553156 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Corynebacterium glutamicum # 4 273 8 273 295 174 44.0 3e-43 MLRTKLLTLSAVTAAAALSLTACAPSSSQGGGGDAAGSSSAGEATSSGSGESLRIGIKFD QPGLGYREGSAQPTGFDTDVARYVADKLGVAEKDIEWVQTPSANRENALENGEVDMIFAT YSITDARKERVDFAGPYFVAGQDLLVRADDTAITGPESLDGKNLCSVTGSTSAQKIKDQF ASGVNLVEQGGYAECVTYLESGQVDAVTTDDIILAGLAAADANKGKFKVVGNTFTTERYG VGLPKDSERCEDINGAIKEMKDSGEWKKALESNTEGTGYTYDETLNSGEDAEFEPCA >gi|289557977|gb|ADCD01000039.1| GENE 6 3463 - 4143 629 226 aa, chain + ## HITS:1 COG:Cgl1907 KEGG:ns NR:ns ## COG: Cgl1907 COG0765 # Protein_GI_number: 19553157 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Corynebacterium glutamicum # 4 226 1 228 228 170 45.0 2e-42 MESISSLLADYGADIPLAFWTNIRLAFLATLGSFVLGVVLALFRISPVPSLRVLGTGYVN VVRNTPLTIIMVLGVLAVWGQLKISFSSDFTLNFFIYAVIALSLYHAAFMCEAIRSGVNT VPLGQAEAARSIGLGFLPAARHVILPQALRGAITPLGNTVIALTKNTTVAAAASVAEASG LMKRMIEFSPDVMVAIFLTFAIGFCLIVIPIGLLTTWASERWAVAR >gi|289557977|gb|ADCD01000039.1| GENE 7 4125 - 5027 725 300 aa, chain + ## HITS:1 COG:Cgl1908 KEGG:ns NR:ns ## COG: Cgl1908 COG0765 # Protein_GI_number: 19553158 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Corynebacterium glutamicum # 7 296 4 293 315 209 42.0 4e-54 MGGGPMSAQASVLFDAPGPIARRRILLANLVALAAVLAVAVIVLIQMNATGQLSGRRWLA AVDGDAWRNYYLPGLQFTLQSAGIAVVSSVVFGLVFGFLRLAPFGPVRWLAAVVVEFFRA VPVLVMMVFFYQLFAQVARTGAIQPQDGPYYAVIAALTLYNGSVIAELVRSGVRSLPRGQ REAAAAVGMTSTQSLRLVEVPQALIAMLPSLLSQFVVILKDSALGYLIGFFELLQYARQL GSGNGNILQSLVVAAVIFIVINFLLTWAATRLSRRLSSRTAGDASAPATPLVGAPTDKAA >gi|289557977|gb|ADCD01000039.1| GENE 8 5125 - 7236 1181 703 aa, chain + ## HITS:1 COG:Cgl1082 KEGG:ns NR:ns ## COG: Cgl1082 COG2171 # Protein_GI_number: 19552332 # Func_class: E Amino acid transport and metabolism # Function: Tetrahydrodipicolinate N-succinyltransferase # Organism: Corynebacterium glutamicum # 397 703 5 297 297 347 63.0 4e-95 MLVVRVGQEGVAGAEVDRGHAQLGEPRHVRPPVLGLGLSPDGGDERGGGRPVQTGAGGGR GVVDPHLGVPVHACPLQHRAHVRVGLLEGLVRSEPVVQVHGRLVRDDVARDAAGHADRVQ PLAVVQALHRDRGRFVRRQGGEHGGQLVDRVVTAPGAARVRRDTGKGDAVPARAVAAALH DAVGRLEQHREVALQQLGGLAGHAGEAREVRGDLFVVVEHPRDVVHGRGAVRAAEAAGQG QLHGDAGLHVHGSAAVQHVPVPHRGHGPARARHGGQGHRVQVPGQDHAGRPPQSGAGDDG VPEPPHLEATEGAQGLLDGVGQRPLLPRDGAHVQQGGGERRDVEVRIGEVGQGYGGETHV SSLRTRLSPPCSVPRPLSRLRHMTQTAAQQPSPRLVSGHGLATTAADGAVLDVWFPAPVA GPLSAADASLRDTLRALAADDADRGTTQAVVELEVDLDAAPASTADAWLRLHALSHRLAR PNELNLDGVFGLLTNVVWTNHGPCAVADFELTRARLRARGAVQVYGVDKFPRMTDYVVPS GVRIGDADRVRLGAHLAEGTTVMHEGFVNFNAGTLGHSMVEGRISAGVVVGDGSDVGGGA SIMGTLSGGGTQRIVIGEHVLLGANSGVGISVGDDCVVEAGLYVTAGTRVSVLQDGEAAR TVKAVDLSGVPNLLFRRNSTTGGVEALPRAGRTVELNAALHAN >gi|289557977|gb|ADCD01000039.1| GENE 9 7460 - 7873 201 137 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MEAPGRAQAVHVRDELGRQRPAVVQQSGPPDASRPPGHGEVHRRVGLELARRRVAPPPGS RGHRQAVQVGRRLVGEDGIRASAQERGEVIGGEAVPGLGQAQVGPDRARVRPLPVDALPD PLQVRPAGAVGWQPQPG >gi|289557977|gb|ADCD01000039.1| GENE 10 7685 - 8242 289 185 aa, chain + ## HITS:1 COG:no KEGG:Mlut_15480 NR:ns ## KEGG: Mlut_15480 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 26 185 176 335 335 184 81.0 2e-45 MPARAWRRRDPATGELEADPPVHLTVARGTRRVRRAGLLDHRRPLAPEFVTHVHGLRASG RFHGRPAAREALDSVRVGADSPPGTRLRLALVAGGLPEPELQAALEPGDPFSPVADLAYR HVRLALQDDGAGHRTREQQARDARRDRYGQARGWTTLRVTWADGREDFRGVVAVVRCRLG PSAST >gi|289557977|gb|ADCD01000039.1| GENE 11 8339 - 9625 1287 428 aa, chain - ## HITS:1 COG:MT0920 KEGG:ns NR:ns ## COG: MT0920 COG0372 # Protein_GI_number: 15840315 # Func_class: C Energy production and conversion # Function: Citrate synthase # Organism: Mycobacterium tuberculosis CDC1551 # 6 425 9 425 431 584 66.0 1e-166 MTHHESVRLTVGEQSLDLGVEHATEGNNGINIAPLLKETGDVTYDPGFMNTANAKSAVTF IDGDQGILRYRGYAIEDLAEHSSFMEVAYLLIYGELPESKETLEAWETNILRHNMVHEDL KLFFNGFPRDAHPMPVLSSSVSGLSTFYPDSLDPHDPEQVHISTVRLLGKLPVLASYAFK KSLGQPFMYPHNSLNYVENFLRLCFGVPAEEYDIDPDVVKALDLLLMLHADHEQNASTST VRLVGSTQANLFASVSAGINALYGPLHGGANEAVLNMLRRIKSEGITPEDFMEKVKNKED GVRLMGFGHRVYKNYDPRAKIIKKTAEDILGKMGGNDELLEIAQRLEEKALADDYFVERK LYPNVDFYTGVIYKAMGFPEKMFTVLFALGRLPGWIAQWRELMEDPATKIGRPRQIYVGE TLRQYPQR >gi|289557977|gb|ADCD01000039.1| GENE 12 9774 - 10925 1154 383 aa, chain - ## HITS:1 COG:ML1488 KEGG:ns NR:ns ## COG: ML1488 COG0436 # Protein_GI_number: 15827783 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Mycobacterium leprae # 3 376 10 367 367 336 55.0 4e-92 MLTLPDYPWDTLTPYRERAAAHPDGVADLSIGTPVDPTPALIRRALTEAADAHGYPTTHG TDALRRAVVDWYARRRGVSGLDPAAVVPTVGSKEFIAWLPTLLGLGAGDVVVHPEAAYPT YAVGALLAGAEAVAADDLDALALEVRERVRLVWTNSPANPTGAVLDAAALRRTVDAARAV GAVVCGDECYAELGWDAWDGAVVPCILSDEVSGGDLTGLLSVYSLSKQSNLAGYRAAFAA GDPELVATLVNTRKHAGMIVPAPVQHAMAVALADDGHVAEQKDRYRRRRDALRTALEASG HTVDHSEAGLYLWTRRADLDPAHATAQDSWDLLGDLADLGIIAGPGVFYGAGGDGYVRVA ITATDEAVARAAARLTARGPRTG >gi|289557977|gb|ADCD01000039.1| GENE 13 10932 - 11258 359 108 aa, chain - ## HITS:1 COG:Cgl1078 KEGG:ns NR:ns ## COG: Cgl1078 COG1146 # Protein_GI_number: 19552328 # Func_class: C Energy production and conversion # Function: Ferredoxin # Organism: Corynebacterium glutamicum # 1 104 1 104 105 152 77.0 2e-37 MTYVIALPCVDVKDKACIDECPVDCIYEGERMLYIHPDECVDCGACEPVCPVEAIYYEDD TPDEWAEYYKANVEFFDDLGSPGGAAKLGMIAKDHPIISALPLQNADA >gi|289557977|gb|ADCD01000039.1| GENE 14 11255 - 11821 264 188 aa, chain - ## HITS:1 COG:no KEGG:Mlut_15520 NR:ns ## KEGG: Mlut_15520 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 14 188 14 188 188 225 96.0 5e-58 MPDRPRRRARPADVVGGALLGVVAGALGTAVHLNLASLPGGWTLPWGAVLALVLVGSTQR WWMVRRAVRGGRALPAGAAVVAGAFTAVLALQRLPLDDALGVSWTAGLWAAAPGAVVASV AWNAGQPVLGLVLLAAGRRLDRRPAEAADGATRPRRATVTARATRPGERVPWTAAPQPRA QREVDGQP >gi|289557977|gb|ADCD01000039.1| GENE 15 11814 - 13724 1973 636 aa, chain - ## HITS:1 COG:ML1498 KEGG:ns NR:ns ## COG: ML1498 COG1217 # Protein_GI_number: 15827789 # Func_class: T Signal transduction mechanisms # Function: Predicted membrane GTPase involved in stress response # Organism: Mycobacterium leprae # 11 624 3 615 628 771 65.0 0 MTSTETRRSDLRNVAIVAHVDHGKTTMVDAMLRQTGAFNTHGDVAERVMDSGDLEKEKGI TILAKNTTVFYSGPSAPEGETVTINVIDTPGHADFGGEVERGLSMVDGVVLLVDSSEGPL PQTRFVLRKALAAKLPVILVVNKTDRPDARIDGVVSDSMDLLLGLASDLAEEDPDLDLDS VLDVPVVYASGKAGRASLTQPADGALPEAEDLEALFNVIMEHIPAPSYTEGEVLQAHVTN LDASPFLGRLALLRIFNGTLRKGQQVAWARQDGALKTVKITELLATKGLERVPAEEAGPG EIVAVAGIEDIMIGETLTDAENPKPLPLITVDDPAISMTVGINTSPLAGRVKGAKVTARQ VKDRLDKELIGNVSLKVLPTERPDAWEVQGRGELALAILVEQMRREGFELTVGKPQVVTR TVDGKVHEPMERMTIDIPEEFMGAVTQLMAARKGRMQEMSNHGTGWIRMEFLVPARGLIG FRTRFLTETRGAGIASSYAAGYEPWTGEIEYRTNGSLVADRAGSATPFAMINLQERGTFF VQPGAEVYEGMIVGENSRADDMDVNITKEKKLTNMRAASSESFEGLTPPRRLTLEESLEF AREDECVEITPEDIRIRKVVLDANERLKAARARARA >gi|289557977|gb|ADCD01000039.1| GENE 16 13839 - 15719 851 626 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 74 614 8 538 563 332 37 3e-90 MSANDKKGRSMFGKKNENDVTAGGQGSHAASSADLEARGAAVPGSSGAGSVPPGPATSAM GVVARHDDLGGEPVLAFRDVDVKFATEFGEVHAVKGVTFDVKPGEVVALVGESGSGKSVT SATAMGLLPGNADITGSVQLAGRDVLTMTPGQLRDIRGDEVAMVFQEPMTALNPVLTVGD QLTEALELHGIAYGTEADKRAVELLTMVGIPDAATRLKQYPHQFSGGQRQRIVIAMAISC SPKVIIADEPTTALDVTVQAEILELLRSLKNKMNTGILLITHNMGVVADMADRVCVMLHG ELVEQGSVHQVLQHARHPYTQKLLSAVPRLGEPLEVAEPEPVTATQTQARYAIEAENLHL EYDHRGKKNRVVHDVSFQVAPGEILGLVGESGSGKSTIAKSVLGLLTIAEGSLRIQGHDL ATMPKAEQRALRKNIGVVFQDPAASLDPRFPIGDIITEPMVVHKVGDRRSRLARAEELLD AVRLPRSVVNRYPHELSGGQRQRISIARALTLDPQVLIADEPTSALDVSVQAAVLDMFAE LQQRYEFACLFVSHDLAVVDMLAHKVLVLKDGRQVEQGPTEEVLHRPKEEYTRRLLAAAP VPDPDQQAERRQERREFLASLGEGVY >gi|289557977|gb|ADCD01000039.1| GENE 17 15716 - 16867 1011 383 aa, chain - ## HITS:1 COG:ML1123 KEGG:ns NR:ns ## COG: ML1123 COG1173 # Protein_GI_number: 15827556 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Mycobacterium leprae # 115 335 73 292 299 186 42.0 5e-47 MTTNNSSTTGAQLDEKQIFDLAEAEDAKLRAKAGKSYSQGALVRKRFFRHKAAMISLIVL VFITLMAFSSIGFAGIPGWWDKSYTAAASVVNGGRPTLSVVPQFLGGDGIRWGEHPFGQD TTGKDYFALVMRGTQQSMIIAAIVGLLSTVIGAIVGAVSGYFGGWVDSVLMRLTDLIIVI PLLVLAAVLGQMASGMKMGILPLAVVLGLVSWTSLARLVRGEVLSLREKEFVAAAVAMGA KPGRLIFKHLLPNTIGVIVVNATFAIAGAVLLETSLSFLGFGVKAPDSSLGLLISDYQNA FTTRPWLFWWPGMIILAIALSVNFLGDGLRDAFDPRQGAGAHRRPRFFGRRAAVTEAGAT TAGGLEAAPTAGRIIDADEDGQR >gi|289557977|gb|ADCD01000039.1| GENE 18 16873 - 18423 1176 516 aa, chain - ## HITS:1 COG:ML1124 KEGG:ns NR:ns ## COG: ML1124 COG0601 # Protein_GI_number: 15827557 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Mycobacterium leprae # 363 516 171 324 325 134 44.0 5e-31 MHSHGRSPPVVLKFILKRLGSSLLVLFGASILLFFLVAHSGDPLQDLRESQNPNRETLIA ARTAFMGLDQPWYARYWDWLQGIGGCVTGQCDLGLSRNGQSVADLLSNAAASTLRLVVLA TVLAIIIGIAIGIVTAIRQYSGLDYVVTFLIFLFFSLPVFWAAVLLKEYMGIRFNDWIRS PELNWPLLIGFAVIAGLVLQAVMAGDLRRRAFTFGATAAFILLAGWVLFAVDFWRNPQMG PVVQLVIGLAAAVGATAVISGLRNRSVLKAALVTAAIGLVAYYATYGLLWRTPSALLLAG LGVILVLVAILVGRLLGGFSKGSAVSASLVTALIMGVAIVAEHLMNYWPTFLKVKPRPIS TIGSGTPNLDAHFWVVFLDRGAQLLLPTILLTIISVATYSRYTRSSMLEVSRQDYIRTAR AKGLPERQVILKHAFRNSLIPITTIMAFDFAGLIGGAVITEQVFGWKGMGELFATGLRDV DPMPVMAFFLVTGTAAVLMNLVADVLYAVLDPRIRV >gi|289557977|gb|ADCD01000039.1| GENE 19 18556 - 20415 1775 619 aa, chain - ## HITS:1 COG:Rv2585c KEGG:ns NR:ns ## COG: Rv2585c COG0747 # Protein_GI_number: 15609722 # Func_class: E Amino acid transport and metabolism # Function: ABC-type dipeptide transport system, periplasmic component # Organism: Mycobacterium tuberculosis H37Rv # 112 614 68 553 557 142 26.0 3e-33 MKYTKLSAAAALAAGSALILSACAPGGGNAGDSSNSGSAASQGGDSGAGNVIEGDKGQKL TAEASGPGLADLGDVETQDGSIAYSVGADDFLSYNGLQSNTYTTYNSAVVDRMFSSFWYF GTDGSIIPNEDFGTYEKTSDDPLTVKYTISDDAKWSDGTPVTAGDFIFHWAANNDTVKAE GSETPLFDSISFEQGKYIPEAPEGEADGKEFTVTYPEPYADWEILISTALPAHIVAKEAG MSFEELVTAAKEKDVEALTPAAEFWNDGWDFSPGELPDASLVPSMGPYKFKDGGWQAGQS ITLEANPEYWGTPPATKELVLRFADPKTHVQALQNGDLDVIEPQATVDTLQQLEGLGDDV NVQTGDQLTWEHVDYNRGEGSVFADSPELREAFALCLPRQQIVDNLIKPIYADAQVMNLR EVFPFQDKYQEVVDAAYPKEMDQPNIDKAKELVEQSGVSKPTVRLGYQAGNQRRTETVAL IKSSCDQAGFDVQDANSPVFFKEVMPAGDYDAALYAWAGSGQKASGANIYQSDGAQNQQS YNNPEVDAAWDKLATSLDENEQLEQTKTIEKLLWEDFQAIPLYAHPGLVGHKADVANVRD TAAQSGALWNVEQWVRVQE >gi|289557977|gb|ADCD01000039.1| GENE 20 20650 - 22128 922 492 aa, chain - ## HITS:1 COG:Cgl0476 KEGG:ns NR:ns ## COG: Cgl0476 COG1233 # Protein_GI_number: 19551726 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Phytoene dehydrogenase and related proteins # Organism: Corynebacterium glutamicum # 21 491 13 471 471 437 55.0 1e-122 MTDTAAGPGFALPRGVEPGRAVVVGAGPNGLTAAALLAREGWEVDVFERAPVPGGACASA PVLGEGTVVDLGAAGHPFGVASPVFRELGLTDHGLAWLHPAVPMGHPLPDGPAALLHRDL EATAAGLGVDARAWRAVHGALVEHVEEILAGALGPVLRPPPHPVAMARFGLRAPWPADLL GRAMFRTEAARALFTGSAAHAILPSSRPLTAAFGALFGALGMSSGWPVARGGSGAIVDAL VAVLRAHGGRLHLGHEVTDLRALPAADAVVLDLTPRQVLRVAGTGLPPRYAAALRRWRPG PSVSKVDFLLDGPIPWRDARLAGTGTVHLGGTATEIRRAEDDVAAGRMPARPFVMLCQQQ AADPLRATGPARGHTVVWSYAHVPHGHPGDVRPLIEAEVERHAPGFRDRIEAAIAMRPAD LEAWNPNLVGGDIAGGSLAGARALLRPTASPRPHRAGRTGLYLASASTPPGAGVHGMGGA WAVRTLLADRRR >gi|289557977|gb|ADCD01000039.1| GENE 21 22152 - 22982 668 276 aa, chain + ## HITS:1 COG:Cgl1400 KEGG:ns NR:ns ## COG: Cgl1400 COG0428 # Protein_GI_number: 19552650 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted divalent heavy-metal cations transporter # Organism: Corynebacterium glutamicum # 21 275 9 267 268 178 46.0 1e-44 MVAPRPPPVRRPSPVDPFWTALALTTFAGLATVLGGVLAIVGREPSGRGLGAALGLAAGV MLAVSFLEMLPASVEGLGGAFGPAATAVAVAALILGAGAYVLLERAVPDPVSEMPGDVDD PAGLDRRRMLRLGTVTALAIGLHNLPEGFVTFAGTLQDPSVGLALAVAMAVHNVPEGVAV AVPVRQATGSRRKAFAWAAFTGIAEPLGALIGWLLLAPFLTPALVAAVFAAVAGVMVTVS LDALLPAARAAGGRAAALGGVLLGVAAMALSLDLLS >gi|289557977|gb|ADCD01000039.1| GENE 22 22998 - 24056 795 352 aa, chain - ## HITS:1 COG:MT0133 KEGG:ns NR:ns ## COG: MT0133 COG0265 # Protein_GI_number: 15839506 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain # Organism: Mycobacterium tuberculosis CDC1551 # 50 346 50 349 355 140 37.0 3e-33 MVDVAADSTPTAPATETPAREAGELAAGLTHVHDGVAVDWDASAHDGSSLDPGQPVADAP GILLVETALGARTGTGTGMVLSPDGLTVTNYHVVEDSSEVHVVVADTGARHTATVLGRDA EHDIAVLDVEGVSDLPVASVSLDPVRRGETVAAVGNGGGQGYLTAVRGTVLGTDRSIMAA AEGTDQYARLSGLIQTDADVVPGYSGGPVVDDAGQVVGVTVAASDGTTADEVDGFAIPLE VAFDVVDQVLSGEETDTVSIGADGALGIMVGADPDVGVVVMQVDAGSAAEQIGLVEGDVI LEIEGRPVGDDASRMSRLVNDHNVGDRITVQWRTADGEVREAEAVLQPALVN >gi|289557977|gb|ADCD01000039.1| GENE 23 24251 - 25666 967 471 aa, chain + ## HITS:1 COG:Cgl1119 KEGG:ns NR:ns ## COG: Cgl1119 COG4667 # Protein_GI_number: 19552369 # Func_class: R General function prediction only # Function: Predicted esterase of the alpha-beta hydrolase superfamily # Organism: Corynebacterium glutamicum # 172 465 1 294 298 235 41.0 1e-61 MTDHAVGIDHDDGAGQQALERTVGHAHAVVVPEGGAEHGAAADVVDALDRAEARGGERQV RGHGHDGGVLEVRDAGVELADGGGAHAGVQGREDVQDHAAAAQLLQGHRGQVRPGEGEVG GGGTHRGQLADGVDGGALHVGRRHGDSLGWARPDGSTPRPARRTANTEGPTMTEPMTSNV TDTALLFEGGGMRAALTSAVVAELLRERIHVDFVAGISAGSSNAVNYLSRDPARARRSFV DFADDPRFGNWLSFLRGKGLFNAEYIYEHAGLPEADLPYDFAAFRANPARLVLGGFDAAS GETRWWDRSDMTTLTDLMVRVRASSTMPVLMPPVHAEGTVFVDGALGVDGGIPLTAAEDA GFEKVLVVLTRERGYVKRPERFPSFYQRTFRRYPAVADALLTRWRRYNATRERLFEMERQ GRAYLFVPESMPISNGERSVAKLAAAHELGLDQVRREMPAIRAFLGLPASR >gi|289557977|gb|ADCD01000039.1| GENE 24 25691 - 26362 438 223 aa, chain - ## HITS:1 COG:PA2757 KEGG:ns NR:ns ## COG: PA2757 COG4125 # Protein_GI_number: 15597953 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Pseudomonas aeruginosa # 87 221 6 141 147 101 41.0 1e-21 MPRTLGRRPGRGEGAPAPSSRRDDGGRPVPPDSAPRGPGPRLGAVSETHHARPGVDPVST PPSDVPRGPGGRDALVRRRVFRTPLLRRVVYAVVFELLAILFTTVILAALGNGGGPSLAV AVVSSTVALLWNIVFNSVFETLERRLGITGRPWWVRVAHAVGFEGGLIVFLVPAVALILG VGLGEAFLIEAGLLVFFLVYAAVYAYAFDSVFGLPDSAARAEA >gi|289557977|gb|ADCD01000039.1| GENE 25 26361 - 26879 537 172 aa, chain + ## HITS:1 COG:Cgl2474 KEGG:ns NR:ns ## COG: Cgl2474 COG1528 # Protein_GI_number: 19553724 # Func_class: P Inorganic ion transport and metabolism # Function: Ferritin-like protein # Organism: Corynebacterium glutamicum # 1 163 1 162 162 156 52.0 2e-38 MKLTDDLLQKFNDQITLEFEASMVYRQLAIAADYLDLSGMAAWLRHQADEEIVHANKFID HVADRDSVPTIGAIPAPPVQAGLSALEIFRAALAHEQKVSEAIRELYRATESAGDLNSRP LLNWFLDEQIEEESTVSEIVGQLELVGDDGSGLLRIDGRLGSRPVETTENDA >gi|289557977|gb|ADCD01000039.1| GENE 26 27026 - 27979 796 317 aa, chain + ## HITS:1 COG:Cgl1064 KEGG:ns NR:ns ## COG: Cgl1064 COG2354 # Protein_GI_number: 19552314 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Corynebacterium glutamicum # 3 313 4 313 318 250 54.0 2e-66 MVGLVALLDDVAALARLAAASVDDVAAGAGRAAAKAAGVVVDDAAVTPQYMAGAAAAREL PMIWRITKGSLRNKLVIILPALLLLDWLAPWILPWLLLAGGTYLSYEGAHKVWGKLTGHG HADADGEEPAVERGPEAEDTVVRGAITTDFILSLEIMVISMNEVADLGFWMKAAILAVVA VVITAGVYGVVGLIVKMDDVGLHLHQNASTSGGRSFGAGLVKAMPHVLRVVTVIGTVAML WVGGHIVLVELDALGVPWPYAVQHGIVEPVTHAAGAFLGWLTETATSAVWGLLWGSVALG VVLLVGRLRGKKAAPAH >gi|289557977|gb|ADCD01000039.1| GENE 27 28106 - 28843 684 245 aa, chain - ## HITS:1 COG:SPAC22H12.03 KEGG:ns NR:ns ## COG: SPAC22H12.03 COG0596 # Protein_GI_number: 19114027 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Schizosaccharomyces pombe # 1 242 30 268 270 102 28.0 7e-22 MGRGRNFTGPAKELGDDFTVELIDLPDHGASPWTDRVDYREIADRVAAHLRGGLAADGPV HLLGHSMGGKVAMVLALRHPDLVDRLIVEDIAPRVSPQATDEFVHLLGTMLRMDLDAYDT RAEADAAMAEHVHDARVRGFLLQNLRRTGGHFAWQPNVAMLFEHLREIGSFPDPVVPEDP ERVFDNPVLWLTGAESDYVQDEDVPRMKELFPRVVRVTVRDAGHWLHADQPEAFVSAVRT FLTAD >gi|289557977|gb|ADCD01000039.1| GENE 28 28661 - 28996 119 111 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MDRPVGGETAPQVGGHPVRDLAVVHPVRPGRGAVVRQIDQLHREVVAQLLGWAGEVPAAA HEAVQERDAARALPDAGGGQGGVGRGGGGGRVHPTQASAGPRRCLPRLQSY >gi|289557977|gb|ADCD01000039.1| GENE 29 29066 - 29800 515 244 aa, chain + ## HITS:1 COG:Cgl1046 KEGG:ns NR:ns ## COG: Cgl1046 COG1051 # Protein_GI_number: 19552296 # Func_class: F Nucleotide transport and metabolism # Function: ADP-ribose pyrophosphatase # Organism: Corynebacterium glutamicum # 10 227 1 205 206 184 49.0 1e-46 MPVAEARVSVAVSTAVFGVRPDAHGVSRLCVALVPRMREPFLDRWALPGAWLGADEELAD VAARVAAECVPGPVRRLEQLAAFGAVDRSPTGRVLTVAHWALSPALDDDGATPASRPDPD VTGLPIGVHVRWHRADAPPALAFDHAQILAAAVARLRADLPRAGVGHALLGPSFTLAELR AVHEAVLGRGLDAANFRRATLAAGTLEETGEVRGGTPHRPPKLYRYRPAGPGTDPDPAGP DARR >gi|289557977|gb|ADCD01000039.1| GENE 30 29828 - 31156 1024 442 aa, chain + ## HITS:1 COG:Cgl1045 KEGG:ns NR:ns ## COG: Cgl1045 COG0379 # Protein_GI_number: 19552295 # Func_class: H Coenzyme transport and metabolism # Function: Quinolinate synthase # Organism: Corynebacterium glutamicum # 8 442 2 428 428 633 73.0 0 MTTPTGTTASVARTLTLIDKDAARGSSCSPDLTRGPWAFDAGLPAYGPGASQDDAVPADA PVQGRIPEEYQRASDEELHARISAARQTLGERVVVLGHFYQRDEVVQHADFVGDSFQLAR ASQGRPEAEAIVFCGVHFMAETADLLSTPDQAVILPNLAAGCSMADMADLDSVEDAWEQL EAVYGTEPDDDGRVPLLPVTYMNSSAALKGFVGERGGIVCTSSNASAVLDWAFERAQRVL FFPDQHLGRNTGHARGIPLEQMPTWNPRLPLGGNSEDALRDAKVLLWHGFCSVHRRFTVA QIEQARAEHPDVQVIVHPECPLPVVEAADSSGSTDFIVKAIQAAPAGSAFAIGTEINLVQ RLAAQHPEHTIFCLDPVICPCSTMYRIHPGYLAWVLEELVAGRVVNRITVPASVAEPART ALERMLAVAPKQSAAQSAGAGA >gi|289557977|gb|ADCD01000039.1| GENE 31 31153 - 32073 463 306 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163755345|ref|ZP_02162465.1| 30S ribosomal protein S6 [Kordia algicida OT-1] # 14 298 8 285 286 182 38 3e-45 MSPADRAPATPAPQPDVERIVAAALAEDAPWGDVSSEAFVPEQARITARVVAREAGVLSG TNALEAAFRLVDPAVSVTLHLADGADLSPGAVVAEVAGPARSVLRAERVALNLVQRLSGI ATTTAAHVAAVRAGGGHARVVDTRKTTPGLRVLERQAVRDGGGHNHRSSLSDAVMLKDNH LAALGFGGPGDPGEDLTVALRTGMARLPHTTHVEVEVDRLEQIPAVLAAGVDTIMLDNFS PAELRAGVELVAGRAVVEASGGVSLETIGAIAATGVDVISVGALTHTVRSLDLGLDAVVE EVSPRR >gi|289557977|gb|ADCD01000039.1| GENE 32 32136 - 33242 842 368 aa, chain + ## HITS:1 COG:Cgl1043 KEGG:ns NR:ns ## COG: Cgl1043 COG1104 # Protein_GI_number: 19552293 # Func_class: E Amino acid transport and metabolism # Function: Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes # Organism: Corynebacterium glutamicum # 1 361 20 353 358 270 49.0 3e-72 MWPALTGVYGNPSSAHEAGRAAAALLEDARARVARAIGARAGQVVFTSGGTEADALAVLG TVRARILAGRPAGHVLTTWIEHSAVRQSCDQLARLHGVEVEHLALDRDGLTCADDLAARL RPDTALVSVHLAHNEVGTVQPVAELAAVAREAGVPLHVDAVQAAGQIPVDVRALGADLVA LSGHKVGGPKGVGALWVRPGHALEPLVPGGGQERGRRSGTQNVAGAAGFAAAFEEAEAER AAAADAWAELRDRFAARVLDGVRELVPDARLTGHPARRLPRHASFVLPGVNGESVLEEAA RRGVLASAGSACSAHDAEPSPALLALGLSDDEARTALRCTFGPDADAPLLDAAADAIVAA VRTVTALR >gi|289557977|gb|ADCD01000039.1| GENE 33 33320 - 34990 1405 556 aa, chain + ## HITS:1 COG:PA3910 KEGG:ns NR:ns ## COG: PA3910 COG3540 # Protein_GI_number: 15599105 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphodiesterase/alkaline phosphatase D # Organism: Pseudomonas aeruginosa # 61 553 35 515 520 444 50.0 1e-124 MCLACVPHPGPVKQTTAPLTHPTSRRSVLAAASAAVLAPAALAGPAAARPARHTPGGLVA SRLTLPSGVATGDVTSNSAVLWARSSGRSRLHATLRAVDEDGKVLRGRFARGLTLRSGWV DGATDHTAKILADTLPSDTRFEVTYAFEDEAGRLGESAVARFTTAPGARFGRKTSAAQSF VWTADTAGQGYGINPEIGGMRGYAAMHATKPDFFLHSGDTIYADNPIPETLEVAGEPTWR NLVTEETSKVAETLNEFRGRHRYNMMDDNLRALYADVPVIAQWDDHETTNNWWPGEVLED PRYTQVRDVDTLAARARRAWQEYMPIADSTALRRGSGFEPARIYRRIPRGATLDVFALDM RTHKGENTPGLETHETPILGEEQLQWLIRGLRASTATWKVIANDLPLGLIVPDGTGQESL SNGDDGAPLGRELEIARLLKAIKDHGVKNVVFLTGDVHYCAAHHYSPDRAAFTDFEPFWE FVAGPINAGSFGPNTLDGTFGPRLDFEAHGPVMGSPRSGEHQYFGHVEIPEDGREFRVRL INAVGRTVYSRTLTAA >gi|289557977|gb|ADCD01000039.1| GENE 34 35065 - 36072 799 335 aa, chain - ## HITS:1 COG:PA3889 KEGG:ns NR:ns ## COG: PA3889 COG1732 # Protein_GI_number: 15599084 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) # Organism: Pseudomonas aeruginosa # 66 335 28 302 311 210 42.0 3e-54 MTTPRATLPSRRRGRTPARAALATLGLAASLVLSGCGLSTAGGYLPSGTPAGDVAGIDLE GAHVAVGSKNFNEGVVLGKITAILLRSAGADVEDLTNMPGSLSARQAQVAGVVDVEWDYT GTAWITYLGHTDPIPDAQAQWAAVRDEDAQQGLVWLPPAELDNTYTFSVRQDRAEELGLE TLADIKDLPTEDQSFCVSAEFAARNDGFLPMLEAYGIERPTGSRLRQMDIGAVFAAVADG SCTFGEAYSTDGRIAALDLTTLQDPLSFFPKYNAAPIVREEVLAQHPEIADLLAPVTARL DNATAARLNARVDVDGEEPTQVAWDWLREEGLITD >gi|289557977|gb|ADCD01000039.1| GENE 35 36069 - 36821 666 250 aa, chain - ## HITS:1 COG:SMa1465 KEGG:ns NR:ns ## COG: SMa1465 COG1174 # Protein_GI_number: 16263252 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, permease component # Organism: Sinorhizobium meliloti # 1 249 1 247 251 121 40.0 1e-27 MIARLRAASAEDRLLLIGLPLLVAALLIGWTVWVRGAALDDVEARLLTWPTVLRLTGEHL ALVGVSTVLVVATAVPLGVLLSRPAARRFTPVAMGLANAGQAAPVIGVIVLLAMAWGFGF RVAVLALSLYAFLPVLANTLAGLRGVDPTVVEAARGMGMSPLQTLLRVELPLALPVIMAG LRTALVLLVGTGAFATFIDAGGLGLLIQTGIVLFRFPLLVSGAILVAALALMIEWIGRLV ETLATPRGLA >gi|289557977|gb|ADCD01000039.1| GENE 36 36818 - 37825 773 335 aa, chain - ## HITS:1 COG:STM1491 KEGG:ns NR:ns ## COG: STM1491 COG1125 # Protein_GI_number: 16764836 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, ATPase components # Organism: Salmonella typhimurium LT2 # 11 317 2 301 382 285 49.0 9e-77 MSTDRDAGAEIRLESLTKLYPGQDRPAVDALDLIIPAGETVVFVGPSGCGKTTSLKMINR LIEPTSGRILIGGEDITRRDPTRLRRQIGYVVQGGGMMPHLSVAENVGLVPRLLKWDRRR IADRVDELLDLVGLDPAIYRDRFPRELSGGQQQRVGVARGLAADPPVLLMDEPFGAVDPL TRQRLQQEMLDIQARVGKTIVMVTHDVDEAVLLGDRILVLEPGAHVAQYATPEEVLARPA TEFVADFVGSGAGLKRLGLRSVDSLPLRPIAQHPTGTPPGGPVLDAATPISEALAALVTA PTEEIAVVRDGTVIGLLDYPTLRAHARAGDEQARP >gi|289557977|gb|ADCD01000039.1| GENE 37 37822 - 39603 742 593 aa, chain - ## HITS:1 COG:BS_opuBB KEGG:ns NR:ns ## COG: BS_opuBB COG1174 # Protein_GI_number: 16080425 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, permease component # Organism: Bacillus subtilis # 383 592 6 211 217 144 35.0 5e-34 MDRRAQRHDERGDRPAHAEQQGLAQGHRDGRRRGRGAQGRRVGRQHRLQGRERVAARDRA GDDVLDEQQHHGEAEDQQDHAEERGDDLEDLAGGGHVQEHAEDVDGQQRHDQAHDDPLDD RSQLVEAFVQGTARQRRQADAEHEREQQGRHHAEGRVHLHLEQRAEQRVLGVGHRLEGPG REDQREDEQADQQGAEAAEQGGAVGDAAGQGQQLPRTPADVADRGGDERQDQHRDDEAQE VREQPVEGGEGLHEPGRRDQADEDAGHDRDEDAGQQAEAAAGRGDGAPGVGAGRVEGVGV GARHGRHASAGRPARRPVGRPSVAVPVTPVVMQNTGSATVSGNVQEHARPTRTEGDDDDG PAPPRRRPGRPGARCRRGGRMSEFLASRWPDILFRAWQHGWLVLQALAIATVLAIALAVI ATRIKALTPIANAFTAVGLTLPSFALIGVLIPLVGIGTVPAVVVVVFYALLPILRNALVG LRGVDPEVLEAARGMGMGPVALFTRVRLPLAWPVILTGIRVAGQLGMGVAAVAAYVLGPG LGSYIFTGLVSLGGANALNYALVGTLGIVVVALVLDGLLVLLGRLTISKGLRA >gi|289557977|gb|ADCD01000039.1| GENE 38 38692 - 39993 1204 433 aa, chain + ## HITS:1 COG:Cgl2969 KEGG:ns NR:ns ## COG: Cgl2969 COG1301 # Protein_GI_number: 19554219 # Func_class: C Energy production and conversion # Function: Na+/H+-dicarboxylate symporters # Organism: Corynebacterium glutamicum # 29 416 5 392 412 339 50.0 6e-93 MSRSHSDALDASGPDSGGAVAAPRRRFGLLPRILVAIVAGVLVGLVAPTWLVQAFATFNG LFSNFLGFIVPVLILALVAPAIGDIGRGAGKLLALTGGIAYGSTLFGGFGALLVCLLVFP LILTPGSFEAMANPEDALLGPLFEVQMDPPFGVMTALLLAFVLGIGLTTLPRGALHEGFD QLRSIIERVVMGLIVPLLPVYIFGVFLNMTAAGEVFKVITTFLGVILLVFGLTVVLLLVQ YVVAGAIAGRNPFTALKTMLPAYATALGTSSSAATIPVTLRQTLLLGVRRPIASFVVPLC ATIHLAGSTVKIVSFSIAVLFLSGQSIDIPVFVGFIFMLGVTMVAAPGVPGGAIVAASGL LSSMLGFTEPQVALMVATYIAIDSFGTATNVTGDAAIAMIVDKIAGDRLIEDSADEGLER RDDEEAATGADAG >gi|289557977|gb|ADCD01000039.1| GENE 39 40067 - 41548 1304 493 aa, chain - ## HITS:1 COG:sll0771 KEGG:ns NR:ns ## COG: sll0771 COG0477 # Protein_GI_number: 16331319 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Synechocystis # 6 469 4 468 468 442 58.0 1e-124 MTATRSGGAATSRLNAKVVGISVAAALGGFLFGFDTSVINGAVDALAGEFGLGAGLTGFA VSSALIGCALGAWFAGPIANRRGRVPVMVIAAILFLVSAIGSGLAFGVVDLIVWRMVGGL GVGAASVIAPAYIAEVSPAHVRGRLGSLQQLAIVLGIFAALLTDALFATMAGGAAQPFWL GVDAWRWMFLAEAVPAVLYGLFALKLPESPRYLVARGRTDEAAEVLREFTGVDRVNLMIE DIRRSLDSERRESLADLRGPSAGLQPIVWIGILLSVFQQAVGINVIFYYSTTLWRSVGFG ESDALTVTVITSVTNIAVTLIAIALVDRVGRRPMLIAGSAGMTVSLGLMALAFSFAETGG AESVSLPQPWSTVALVAANAFVVFFGATWGPLVWVLLGEMFPNRIRAGALAVAAAAQWAA NFTVSTTFPWLADIGLTLAYGLYAVMAALSLAFVVAFVPETKGKTLEEMSDVVVRSPGQR RAVRAEAERGLRG >gi|289557977|gb|ADCD01000039.1| GENE 40 41787 - 43523 1130 578 aa, chain + ## HITS:1 COG:TM1619_2 KEGG:ns NR:ns ## COG: TM1619_2 COG0749 # Protein_GI_number: 15644367 # Func_class: L Replication, recombination and repair # Function: DNA polymerase I - 3'-5' exonuclease and polymerase domains # Organism: Thermotoga maritima # 210 573 244 613 613 89 26.0 3e-17 MFVVLGPAPASVGSPGAWWAVDGDDATPLVSCPAGSVAGLVAGLPARLGVDPSTVRWVLA DVGTEYAAWLAAGVRVDRCWDLALVQRILRHAATAPGSGVRYTPVAQLEVADPTEPERPA RVPDGQESFFDLPDETGPAPDVTVLAAELAAQRAAVEGSAHPHRLRLLAAAESQGALVAA EIRAAGLPWDRGVHEALLTEQLGPRPAQGERPARLQALAERIADVLGSPGLSPDSQPSLL RALQTAGVAVESTRQWDLKHWIDAGGAQREARAALLAPLLEYKALARLWTANGWHWLDQW IGDDGRFHAAYLVGGVVTGRWAAHGGGAMQVPAGVRDAVRADPGWTLTVADASQVEPRIL AAMAADEALARAGTTPDLYREVAEQGRAAGTALADRGRAKIALLGAMYGSTTGDSAALMP HLRRLYPRAIGLLERAASVGEGGGQVSTWLGRWSPAPGRKWQESVSDVGTQAAESAARRR RRSQGRFTRNFVVQGTAAEWALCWMGEIRRRLRSAGMRTELVFFVHDEVVLHGPATEAEA VRTVVAESASAAGRLLFGPAPVDFPLTVSSVGSYADAK >gi|289557977|gb|ADCD01000039.1| GENE 41 43655 - 45100 1058 481 aa, chain + ## HITS:1 COG:lin2977 KEGG:ns NR:ns ## COG: lin2977 COG0477 # Protein_GI_number: 16802035 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 24 437 12 426 470 228 34.0 3e-59 MPVAPRPSDGAASSVFTPHQQRILAVLLIPIFMSLLAVSSINVALPALQRGLDASDAELQ WAISGYTLVFGMVLVPAGRAGDLFGRRRLFMVGLGVFALGALLSGLAPTGVLLVLARLVM GVGAGLLNPQVTGFIQGEFSGASRARAFGALGAVVGVSVAVGPLLSGGLIAWLGGDLGWR ATFLVNVPIALGALVVARHWLPRTVPARARRPDLDPVGVALLAGALVAVMLPFLDRGLGP WRFVLVPVGIGLAALWTRWEARYARRGRAPMVDLRLFQTRSFACGALLIAIYFTGSTSMF VVIAMFMQNGLGYPALHAALIGLPSAVMSSVMATVAGRVVLRTGRKIVVLGIALALLAVV GSIGVAWANREFGLSPWWLLLTLAILGAGQGLVVSPNQTLSLAEVPPRHSGTAGGVLQTG QRVGTAVGTAVIVGVFLGVASGADWDGALMAAFALVAMCMALALLLALADLRGPRTAAPR G >gi|289557977|gb|ADCD01000039.1| GENE 42 45093 - 45548 120 151 aa, chain + ## HITS:1 COG:AGc57 KEGG:ns NR:ns ## COG: AGc57 COG1186 # Protein_GI_number: 15887394 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor B # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 21 151 24 156 156 79 44.0 3e-15 MAEPRTGDVRVTPGPGAPRGLVIPAGELVERFSHASGPGGQGVNTADSRVQLSLDLAATS ALDDVQRARVLARLAPRLAGTVLTVSVAEHRAQRRNRVAARERLAALLREALAPPTPRRA TTPTRGSRRRRLEAKRRRSEVKRTRRRPGLD >gi|289557977|gb|ADCD01000039.1| GENE 43 45573 - 47039 961 488 aa, chain - ## HITS:1 COG:PAB0087 KEGG:ns NR:ns ## COG: PAB0087 COG1680 # Protein_GI_number: 14520356 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Pyrococcus abyssi # 24 389 6 375 447 106 28.0 1e-22 MTQTTPAPPPAPSLDRLREAAPYLSRWLATQVETRHAPGAQVAVRLGDELVLSAAFGVAD EATGAALTTGHLFRVASHSKTFTAVAVLRLVAAGRLRLDDTVAGRLPDCADTPLARVTVR ELLSHTSGAIRDGVDADHWQLDGPFPDADALRAIVRDHGATYAPQERFKYSNIGYGLLGA IIEAVTGRCYAEHVTEDILVPLGLTDTRPEIDDDAAGRAVVGHTRAHGRGRRVSVAPTAT GALAAATGFVSTAEELSRFFAALALDRRELLDEHALRLMHRAEASFPRGAGTGTYGLGLI GISVGGRRLVGHSGGFPGQITRTLVDPVTGLTVSVLTNAVDGPADALAVGLVELIDLLAH DAADGQALPAGVTADDLDRLTGRFVSLWGETDVVRAGERLVLIDPGTPGPRDGMHELRAL DATTFLPEDEDGFGASGERIPFDLGDDGRVVRMRVSGVSSWPEEDYLARRGDAWGHRSAA GRGVTGQD >gi|289557977|gb|ADCD01000039.1| GENE 44 45960 - 47927 774 655 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MGEQVDELDEAHRERVRRTVHGVGEHADGQTGHRVHQGPGDLPGEAAGVAHEPSSAHADP DQAEPVGAGPGPPREGGLGPVHQAQRVLVQQLTPIQCESGEEAAELLRRGDEAGGRGQRA GGGRCHAHPTPTAVGPGVADDGPARRVVVDLGAGVGEAERDEDVLRDVLGVAAARDSLDD RPQQAVPDVRILEPLLRGVGGAVVPDDRAQGVGVREGAVELPVVRVHPVADGAGGVREQL ADGDPGQRRVGTVGQSSGHGVVQAQTTGGDQTQHGDGREGLGMAGHAEQVAGGERRPGGL VGHSERGGEHQLVAEPHGHLGTGRVPRLHLGGQPPGQVRGRLPEAVEGRSGRRGGGGLGH ERPLYDAGRAGSGAGVLRVRVQGRVGGVGQGEHDGGHARVLEEGVLHALEQDRGLALPLV PGQVHGPDDEELLRADVLEVQVAHGEHLGPLQQPAQHPGPDHRVGDLADEERHVPREQED RDDPEQHAHEDRAGGVPPGVPGELVQGEGARRDGQADQGRGVLHPHGAQGGVRGLAQERG IADVPPLRVAADAPVRVQERDALEHERDGEHDVRDRVLRLLLGGGPGRDPVPDRDRRAHR EQAEGRDHRPHIGCPPVAQRVPRVGGSAGPTLRQEQEDLIAGVGPGVRGLRHHRG >gi|289557977|gb|ADCD01000039.1| GENE 45 48224 - 49354 796 376 aa, chain + ## HITS:1 COG:PA4362 KEGG:ns NR:ns ## COG: PA4362 COG3268 # Protein_GI_number: 15599558 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Pseudomonas aeruginosa # 13 331 2 307 352 83 30.0 8e-16 MTDSPLHLDHPDAPRIIVLGATGYAGSLVVDALVAQGARPVLAGRNRDSLQHAATRRDGL EVAVADAGDPASLRALAAEGDVLVSTVGPFERYGRPVARAAAERGAHYVDSTGEVGFVKD LKADLDATARRTGATLLPALGFDYAPGMLAGGLALAEAGGRARSLQIGYFADGELDPRVD LSHGTRQTMVGALTERTITWRGGRLATTGPASRSAVFRVDGQDRRGVLFGGTESLFLPRM QPGLDEVEVFNGWFPARPTQIGAAALGAVGWLPGVARGVQALLRPLAGDPGGPDAADRAR TGSRVGAIARDAAGRIVADVHLRGPNAYTLTGDLMAWGARQLAAGRALEAGVVSPIQAFG LEDFETACAGAGLVRA >gi|289557977|gb|ADCD01000039.1| GENE 46 49383 - 51035 1408 550 aa, chain - ## HITS:1 COG:MA1861 KEGG:ns NR:ns ## COG: MA1861 COG0661 # Protein_GI_number: 20090711 # Func_class: R General function prediction only # Function: Predicted unusual protein kinase # Organism: Methanosarcina acetivorans str.C2A # 5 507 12 517 559 269 30.0 1e-71 MALHLQRYREIAHVMARNGLRATAVQAGLSRWLPLEEGEPHLGIDAEARPELFVRTFEEL GVTFVKLGQLISARPDLFPEAYCAAFARLTDSTTAVPFEAVARTVEEDLGADVDALFAWF DRAPLATASIGQAHRARLHDGRAVVVKVRKPGVVEQVQADLEILRTLAATWSRASRTFAD LDVPTMVDEFDRSLRAELDYVVEARACEEIAAGFRDTPGVRFPWIEWDLTTSRVLTMQEL SGLRVDDLAGLDAAGIDREELAYRAADVLLAMVFEHGVFHADPHAGNLFIEPDGTVGFID FGSVGRISPSLRRRFAGLAMALARQDTDGLVRALLDIAPPRGPVDRRRLRLEVARIIGRL EGRELEDIRVAQLVSEIFALVRRHRLSLPPELVQLLRMLIIVDGIGRRLHPGFDYTRVLD PFALRLVGEHLDPRRVAGRIGRATIAAAELGIDLPEYARKVMERIDDGGIDVTVRASELE PLVTRLERTGDRVVAAMVVAAMITGGTNVLVAYKDRLGRFAGPVVAAGGAALTGGSAYLA WISRPRRRPR >gi|289557977|gb|ADCD01000039.1| GENE 47 51046 - 52503 992 485 aa, chain - ## HITS:1 COG:Cgl2030 KEGG:ns NR:ns ## COG: Cgl2030 COG1085 # Protein_GI_number: 19553280 # Func_class: C Energy production and conversion # Function: Galactose-1-phosphate uridylyltransferase # Organism: Corynebacterium glutamicum # 32 472 5 438 442 441 52.0 1e-123 MPRARCCSSSDRRARRRRPARAGTASYPGLVHPSVSEPLTRLPDGTVKQRNPFTGTEVWT VPGRGHRPLGLVRPAPQPLDPAQQGRHCAFCEHRLLETPPEKSRIVSTRADDGAPAWQIL RHPAAERLGETTPAFRRVPNLFEILSYDYWRLNHGHELPPDARRRRDEYLATEAGRAHVR AVVAAKLHASGRSAEEAAAVSEAELIAASAAFFGGTHDVVIARRHFVDGAVDDHQLASSG TLTPDEHHAFLALTADAMRDLYATTPAVRYVSVFQNWLKPAGASFDHLHKQLVAIDEVGA QNVAALDRLREDPQVFNHAALDVAVAHDLVIAAHEHAVMFAGFGHRYPTVEVYSTSPVGQ PWRQSAAELRAVSDLLHAAHAATGPDVPSNEEWHTRPPGVASPMPWRVMLKWRVSTLAGF EGATKINVNTLSPWDVRDRVLARLRELRAAGALADGVRIGADARVRPGALRYADGAARLT PPRGR >gi|289557977|gb|ADCD01000039.1| GENE 48 52472 - 53482 895 336 aa, chain - ## HITS:1 COG:AGpA656 KEGG:ns NR:ns ## COG: AGpA656 COG0604 # Protein_GI_number: 16119675 # Func_class: C Energy production and conversion; R General function prediction only # Function: NADPH:quinone reductase and related Zn-dependent oxidoreductases # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 1 336 26 357 359 174 35.0 2e-43 MRALVLQSYGGREAMALTDVPAPTAAAGEVLIRTRAVGLNPVDAMHREGDFKAIAPDDFP TVAGNELSGIVETVGAGVTAFAPGDAVITRVDPSGHGAFAELAAVRADWVAAAPARMPLT DAAGLPLAGLTAQQALGPEHLDLQPGERLLITGAAGGVGLIATRLAHLRGAHVTVTASAA GEPYVREAGADAVIDYRARTVAEGGERFDKVFDLIGGDQMAELLGSIEPGGRLVTIAGPP SPGSLRETARPSRRPLAAVVSRVASAKVRRAAKKAGVSYEFFLMHPDGAGLAELVRLVDA GELAVTVDSRYPLADWEQAFERLESHHAKGKVLLEF >gi|289557977|gb|ADCD01000039.1| GENE 49 53670 - 55184 1318 504 aa, chain + ## HITS:1 COG:CC3724 KEGG:ns NR:ns ## COG: CC3724 COG0427 # Protein_GI_number: 16127954 # Func_class: C Energy production and conversion # Function: Acetyl-CoA hydrolase # Organism: Caulobacter vibrioides # 3 502 14 513 514 645 64.0 0 MSSRIHHPGLRSKVMSAAEAAAFIQHGTTVGMSGFTGSGYPKAVPMALAERAKELHARGE EFRINLHTGASTSAEMDGALAEADAVALRTPFQSDPTMRAKINAGAIEYIDTHLSHLAQT VWNGFYGPMTTAVIEVSGIREDGRLVPSSSVGNNKSWIDLADQVILEVNSWQSEDLEGLH DVYYGTALPPHRTPIMLTHPADRIGETYLRCDPAKVVAVVETHAPDRNSAFKPADADSIA IAQHLVEFFEHEVAQGRYDERLLPLQSGVGNIANAVMSELVKSRFTGLSAFTEVVQDGML DALDSGTLATASATAFSLSTEAAERFNDNAAKYRDKLILRTQEISNHPELVRRLGILAMN GMLEADLYGNVNSTHLMGTKMMNGLGGSGDFARNAFTSFFLTPSTAKGGDISCIVPMVSH VDHTEHDVHVVVTEQGLADLRGLSPKQRARTIIDTCAHPDYREQLRDYFDRAMRESDGLH TPHLLGEALSWHQRFLETGTMRHG >gi|289557977|gb|ADCD01000039.1| GENE 50 55300 - 55725 332 141 aa, chain - ## HITS:1 COG:no KEGG:Mlut_15890 NR:ns ## KEGG: Mlut_15890 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 140 1 140 141 215 99.0 5e-55 MTKRRQSAPLSQTAARLGLGGFMTAAGLSHLTVARREFRAQVPSWVPLPADLVVLGSGVA EIGLGAALLALPGQRRLTGTALAAFYTAIYPGNIGQYAERKDGFGLDTDGRRLARLFGQP ALIAAALWAAGIPEREQGGRR >gi|289557977|gb|ADCD01000039.1| GENE 51 55794 - 56744 610 316 aa, chain + ## HITS:1 COG:CC0915 KEGG:ns NR:ns ## COG: CC0915 COG1846 # Protein_GI_number: 16125167 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Caulobacter vibrioides # 159 311 11 148 148 120 47.0 5e-27 MRLLHEGAGLVRGDIGEHDLEGDLQAEALTLAADAHARADGGVGDVGTGGTGDHLQGRVE ARGVAGGEQLLGVGALAGAAHFGGHGEVEVDPPVGGADMAVAAGAGAERLGGVDGLHGRS FHPPAPCGTSRLQPATLLGRAQPSRSPATTRIASMDAAPTPSLALEDQLCFALHRAARAV TRGYGPLLSRLGLTYPQYLVMLTLWQAESDASAETDASTPDTGALGVGALRDRLGMDNGT ITPLVRRLAGMGLVTRERDVRDERRVLVRLTDEGRALRASARTVPADALTRIPLDVAERQ VLMDQLNRITKAVGPR >gi|289557977|gb|ADCD01000039.1| GENE 52 56777 - 57583 643 268 aa, chain - ## HITS:1 COG:DR2549 KEGG:ns NR:ns ## COG: DR2549 COG0596 # Protein_GI_number: 15807533 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Deinococcus radiodurans # 8 264 14 274 278 155 36.0 7e-38 MATFRHQGLTFDVRDGGPAEGEVVLLLHGFPQDATSWRHVEPLLHAAGLRTLAPDQRGYS PGAAPRATAAYRLPALVGDAVALADAAGARRVHVVGHDWGGAVAWALATAHPERVASLTV LSTPHPAALARALRGPDQLRRSWYIAAVQAPSLPERILARRLGSLLQRGQVPGAEHYARR FSTPQSLRGPVNWYRANPDLVTTTRSAPVSVPTTYVWGTRDAALGPRAAELTAGQVAGEY RFVKLDADHWLPEREADAVARAILDRVR >gi|289557977|gb|ADCD01000039.1| GENE 53 57610 - 58620 862 336 aa, chain - ## HITS:1 COG:CC2016 KEGG:ns NR:ns ## COG: CC2016 COG2130 # Protein_GI_number: 16126259 # Func_class: R General function prediction only # Function: Putative NADP-dependent oxidoreductases # Organism: Caulobacter vibrioides # 5 336 2 340 341 298 48.0 1e-80 MSTPTRTREIHLASRPHGAPTPENFRLTEVELPELAEGQVLVRNTVMSVDPYMRGRMNDV ESYVPPFQLDAPLDGGAVGTVIASRHADVPEGTSVLHGLGWREHAVLDGDTVQAVDTSQF SDSTYLGVLGMTGLTAYTGLVHVAEMQEGDAVFISGAAGAVGSVAGQIARLLGASRVVGS AGTPEKVAWVKELGFDAAFNYHDGSPTDLLAEAAPEGIDVYFDNVGGDHLEAAIAAMRVD GRVAMCGAIAQYNSTEPPAAPRNLALAIGKRLTLRGFVLQKYAAQVRPEFLERVGPWVAD GKIQWDETVREGLENAPQAFIDLLEGANTGKMVVRL >gi|289557977|gb|ADCD01000039.1| GENE 54 58665 - 59348 648 227 aa, chain - ## HITS:1 COG:SMb20212 KEGG:ns NR:ns ## COG: SMb20212 COG0693 # Protein_GI_number: 16263953 # Func_class: R General function prediction only # Function: Putative intracellular protease/amidase # Organism: Sinorhizobium meliloti # 3 225 4 225 226 262 60.0 5e-70 MSRILMILTSHDQLGDTGRKTGFWLEEFASPYYVFTDAGHEVTLASPRGGQPPIDPTSSK PEMQTEATRRFDQDEEAKAALAHTTPLAQVDVDGFDAVFYPGGHGPLWDLVSDADSTRII LDSDAAGRPLGLVCHAPGILHPITAADGTPFVRGRQVAGFTNGEEEAAQLTDVVPFLVED SLIAAGADYRKGPDQESFVVTDGTLVTGQNPASSADAARRVLDLLAR >gi|289557977|gb|ADCD01000039.1| GENE 55 59463 - 61115 1476 550 aa, chain - ## HITS:1 COG:Cgl1037 KEGG:ns NR:ns ## COG: Cgl1037 COG0488 # Protein_GI_number: 19552287 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Corynebacterium glutamicum # 1 549 1 546 547 710 74.0 0 MTATLVASGLAGGHGHRTLFDALDLTVAPGDVVGVVGANGAGKSTLLRILGGDLAPQAGT VSLAPSDAFVGWLPQEHKRVSGETVAGYIARRTGCAEATREMDASAEALADPDVTDAAAD RYNTALTRWLASGAADLEERIPAVLADLGLDLSASPEQVLMTSLSGGQAARVGLAALLLS RFDVVLLDEPTNDLDLDGLTRLEAFVQELRGGVVLVSHDREFLARSVTRVLELDLAQRTN RVYGGGYEAYLEERATLRRQAREKYEEFAEQKQDLVSRARTQREWSSQGVRNAMKKSPDN DKLRRKANSESSEKQAQKVRQMESRIARLEEVEEPRKEWRLEFTIGAAPRSSSVVATLND AVFRQGGFTLGPVSLQVNAGERIGITGPNGAGKSTLLRGLLGRQAPDEGMAALGSSVQIG EIDQARSLLAGTVPLAAAVEALVPEMASGEVRTLLAKFGLRADHVNRPVDELSPGERTRA SLALLQARGVNVLVLDEPTNHLDLEAIEQLEQALETYEGALLLVTHDRRMLDTVRTDRRW QVQDGRVTER >gi|289557977|gb|ADCD01000039.1| GENE 56 61326 - 62414 974 362 aa, chain + ## HITS:1 COG:no KEGG:Oant_4800 NR:ns ## KEGG: Oant_4800 # Name: not_defined # Def: hypothetical protein # Organism: O.anthropi # Pathway: not_defined # 5 362 3 358 358 405 60.0 1e-111 MTEPVKYTPDIEHSVDREEDLTREILAQMGAAQRRAAGEHKHAHRDAHAKSHAVLKATLE VHEGLAPELAQGIFARPGTYEAVARLSSAPGDIHTDRTPAPRGWALKVLGMEGKRLLPDL DSHNQDFLMVNFPTLAFGTVARYKEMLSLLEKNSQSPELLQRLTTGAARVVRGAVETVGG TPSATLEGLGRDNAHVLGETYFTQGALRYGDHVAKISLAPASENVRALTGQDMKVEDFSS ISEIVADFFSRESAEYVLRAQLATDPERMPVEDASVLWDEEEAPHQPVATLRIEAQESYS HPRRVYGDDALTFNPWNGVVEHQPLGSIMRVRKRAYEQSTRYRHEFNDRPAPEPATLDEI PD >gi|289557977|gb|ADCD01000039.1| GENE 57 62468 - 63163 639 231 aa, chain + ## HITS:1 COG:no KEGG:Oant_4801 NR:ns ## KEGG: Oant_4801 # Name: not_defined # Def: hypothetical protein # Organism: O.anthropi # Pathway: not_defined # 2 231 3 232 232 308 66.0 7e-83 MNDRPDPRLQDESRLDAVKRAVEDVAQDAPTLAKIALEAMIREHNPDLSGTADSAGRVGM RSGKVSELTAIARLKPGGAERLQRIFDLTRGNMDGAQRVSTLHDMRFVFFDDNTRILFAT AYDGDWDAYINDFATKIPELMDLLFQNVEGWPGIDSPTVKDFIADHQITASGWFVANPQV TVVDTRRLQRTEDAVNTFLDQMAGRTDLDEDTAAALKQLTDTISTPEAVDY >gi|289557977|gb|ADCD01000039.1| GENE 58 63165 - 64571 1229 468 aa, chain + ## HITS:1 COG:DRA0145 KEGG:ns NR:ns ## COG: DRA0145 COG2837 # Protein_GI_number: 15807814 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted iron-dependent peroxidase # Organism: Deinococcus radiodurans # 24 456 28 458 460 474 52.0 1e-133 MGVLKDLKERFDRERVELDLDDIQGLVLRSRPEPYVGAHAMLTVEEAEGGRDFVRRLAEH VTSAQDWADDLQSWTGVAISYAGLRALGLPEDSLASFPLPYQQGMAARAQQLMDTGPNAP EHWDEAFTQDACHIALTIYAADADALDAALDQAEEVLEHSTGVTLVATHRFGVDELNKNP FGFRDSISQPTVAGSGVRPQPGQERSISAGEFILGENSETGSPLAVPQPDVLGRNGTYVV LRKFASRVGAFNEYLASQSPDPEEQHRIAAKMFGRWRSGAPLVLSPDHDDEELGSDPERR NDFTFEDDPKGLMCPHSSHMRRLNPRDSDLSIMTDVNIKRIIRRSSTYGPGWSPEVTSAD DAKEDRGIYFIFISARAFDTIEFMQQEWINGGNFVDLGSERDPIVGLHEDDPTQGRFTIP AEPARKRIDGITTFNRMAGGEYLFMPSLSALRWIGEAGWTSDQSDAEA >gi|289557977|gb|ADCD01000039.1| GENE 59 64571 - 64957 298 128 aa, chain + ## HITS:1 COG:no KEGG:Arch_0533 NR:ns ## KEGG: Arch_0533 # Name: not_defined # Def: hypothetical protein # Organism: A.haemolyticum # Pathway: not_defined # 15 122 6 113 115 68 38.0 8e-11 MQPPSPGGPAGAQPWQVDLDWLWGTPPGNDGSPATLRLDVVGPGAARAAAAWLGSLPGDE NGVRGRGGWRADPGEQPDADDHAVLLLTSAGEDVADGLEDAADDAHAALVAVGGLTLRWT PLPRDPSR >gi|289557977|gb|ADCD01000039.1| GENE 60 64989 - 65714 502 241 aa, chain + ## HITS:1 COG:ML1298 KEGG:ns NR:ns ## COG: ML1298 COG0406 # Protein_GI_number: 15827669 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Mycobacterium leprae # 3 219 2 218 250 200 49.0 2e-51 MATVLLVRHGRTTANATGLLAGRTSGVSLDEHGREQAARTADRIAAVPVATVVASPLERC AQTARALLDRQPGTVRSLVDDDLTECDYGQWQGRALSDLATEPLWATVQTQPSAVVFPGG ESMAGMQARSVAAIRRHDAAVEAEHGPGAVWVAVSHGDVIKSILADALGTHLDLFQRIEV GPASVSIVSYGPSRPRVWATNTDAGDLSWLSALGPSDDAPVGGGAGTGTGAVDEQTPRIV A >gi|289557977|gb|ADCD01000039.1| GENE 61 65711 - 66253 437 180 aa, chain + ## HITS:1 COG:no KEGG:Mlut_16020 NR:ns ## KEGG: Mlut_16020 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 180 1 180 180 291 94.0 5e-78 MTDAPAPAHEFDWPDRVVTGTLGRPGARTFYLQVRTGPRLVSLALEKQQSALMAEMLDEI LDDLMALEGNPHSVPASTPVELVDNEPLDPVQEWFRVGAIGLGWDPTTAQVLIDAHPLTD DDAEPALETDAEAVRVRMPVGAARAFARRTREVVDAGRPFCSDCGQPIDPDGHDCTLPDS >gi|289557977|gb|ADCD01000039.1| GENE 62 66253 - 67035 514 260 aa, chain + ## HITS:1 COG:no KEGG:Mlut_16030 NR:ns ## KEGG: Mlut_16030 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 260 1 260 260 450 91.0 1e-125 MSVADVPADELMAGELTLTGRITTASNATFLGAIGDTPVVYKPVAGEAPLWDFPTGTLAR REVAASLVSEALGWDIVPRTWLRDGPFGEGMVQLWQEQDPEQDAVDLFPADEVSASGWLT ILEGEDEDGNRLALAHEDSTALRRMAVFDVIVNNADRKGAHILAMPGGHRYGVDHGLTFH VQDKLRTVLWGWLGEALSEEERDGVARVGTGLDGELGRGLAELLSAEEVEALAERCAQLL DDGIFPAPSGLTPAVPWPLF >gi|289557977|gb|ADCD01000039.1| GENE 63 67059 - 68903 764 614 aa, chain - ## HITS:1 COG:jhp1447 KEGG:ns NR:ns ## COG: jhp1447 COG3004 # Protein_GI_number: 15612512 # Func_class: P Inorganic ion transport and metabolism # Function: Na+/H+ antiporter # Organism: Helicobacter pylori J99 # 15 425 18 433 438 227 33.0 6e-59 MTSGQSERRMSWRAIRTEAGSAVLLVVVTAVALLWANSPLSEAYFGLWDVEIGFDVGGFG LHMNLHHWINDGLMVVFFLVVGLEVRQEFAHGTLRDASRARLALIAGVAGVALPAVLYIL IVAAAGGDGLGGWGAVVGTDTAFLLGALALVGPKLSGQLRVFLLTLTVVDDFLAVSIIGI VYSDEIRLVPLLIAVACLAGLWLLSRSRQGSATPYVLIVIVLWFATVDSGVHASLAGMVA GLLIPAYPTRRQQVVEARQLFRDFWQSPSAASARAVDRGLAQGISVNERMHEVLRMPTAL VIVPIFALANAGVDLRGGVLVDSFQSSVTWGVIVGLVLGKLLGIGLATFVAVKLGAGRLP EGVGMGSVFGGAALSGIGFTVSLLVIGLAFGSTSDLGRQATVGVLVAMVLATALGWLIFR VAAKRWGEETADLPMVLTPPVDPEVDHIRGPEDAQLTLVEYIDFECPYCAHATGSWEDLR SRFGDDLRYVVRQLPHHPHGPIAARASEAASNQGMFWPWLDFVFTRQDALEREDLIRYAE ELGLDVAQFTADLDSAAVRARVERDLESADASGAHATPTFFVDGRRLLGSYDARTLTSTL EASRRGTRTQEVRS >gi|289557977|gb|ADCD01000039.1| GENE 64 68990 - 69556 537 188 aa, chain - ## HITS:1 COG:ECs3951 KEGG:ns NR:ns ## COG: ECs3951 COG3663 # Protein_GI_number: 15833205 # Func_class: L Replication, recombination and repair # Function: G:T/U mismatch-specific DNA glycosylase # Organism: Escherichia coli O157:H7 # 16 178 2 157 168 99 36.0 4e-21 MRFTQAELQQFRDRTVPDLLPDPLRLLFIGINPGLWTAATGAHFARRGNRFHPALHRAGL TRHLIDASDGYKAEDLAELHARGIGISNLVPRATARADELTAEELAAAPARLDALVAAHA PAVVAVLGVTAYRQAFGHPKAALGEQQTPWPGTRLFVAPNPSGLNAHATLDSLAADYRAA GAAAGLVD >gi|289557977|gb|ADCD01000039.1| GENE 65 69558 - 69812 133 84 aa, chain - ## HITS:1 COG:SP1740 KEGG:ns NR:ns ## COG: SP1740 COG4115 # Protein_GI_number: 15901572 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 1 84 1 84 84 91 54.0 3e-19 MRLVWDRSAWEDYTHWQTTDRKVLKRINTLIDAALRDPCEGIGKPEQLKYGAAGAWSRRI TEEHRLVYLVDGEDLIILQAKYHY >gi|289557977|gb|ADCD01000039.1| GENE 66 69813 - 70073 235 86 aa, chain - ## HITS:1 COG:MT3465 KEGG:ns NR:ns ## COG: MT3465 COG2161 # Protein_GI_number: 15842953 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Antitoxin of toxin-antitoxin stability system # Organism: Mycobacterium tuberculosis CDC1551 # 1 72 1 72 91 85 68.0 1e-17 MSISASEARKTLFPLIERVNADRDAVEIVSRKGNAVLMPADEYAAWQETAYLFRSPANAR RLLDAYERARAGSVEEHALDRLDGDA >gi|289557977|gb|ADCD01000039.1| GENE 67 70054 - 70326 70 90 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|289705295|ref|ZP_06501694.1| ## NR: gi|289705295|ref|ZP_06501694.1| hypothetical protein HMPREF0569_1884 [Micrococcus luteus SK58] # 1 90 1 90 90 156 100.0 3e-37 MLWRTGFGRLDGPQDNRTARGGLRQESGCGHLREAQGAAERAGDAVAAPTDHEGKEICIP HGTPEFDSPDWYHKQVPHRTRGGQHVHQRQ >gi|289557977|gb|ADCD01000039.1| GENE 68 70462 - 70812 92 116 aa, chain + ## HITS:1 COG:Rv1042c KEGG:ns NR:ns ## COG: Rv1042c COG3293 # Protein_GI_number: 15608182 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Mycobacterium tuberculosis H37Rv # 1 112 18 132 135 100 49.0 8e-22 MLPSNQGRRGHPFGEHRRVVEGIAYRYRTGVPWRDLPREQFGPWQTVRKRHRRYAADGTW DRVLTQVLAEADAAGMIDWAVSVDATIARAHQHATNTTRPDQDTGGRGESQETAAG >gi|289557977|gb|ADCD01000039.1| GENE 69 70712 - 71323 299 203 aa, chain + ## HITS:1 COG:Rv1041c KEGG:ns NR:ns ## COG: Rv1041c COG3293 # Protein_GI_number: 15608181 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Mycobacterium tuberculosis H37Rv # 6 173 88 251 287 97 42.0 2e-20 MRPSPGPISTPRTPLVRTRTQGAGANHKKLPLDEVEPPGHGIGRSRGGLTTKIRHAVDGR GRPLAAIVTGGQRNDGAVLAQVLAEIQIPRLGAGAARARPEAVIADRAYATGVIRNELRR RRITAVIPEKRDQIAARARRGSRGGRPPAFDAQAYRGRNVVERHFALAKQWHGDCGLTQP ADVVAAALLLRRIAHHQQIEEPR >gi|289557977|gb|ADCD01000039.1| GENE 70 71320 - 71730 168 136 aa, chain + ## HITS:1 COG:no KEGG:KRH_00540 NR:ns ## KEGG: KRH_00540 # Name: not_defined # Def: putative oxidoreductase # Organism: K.rhizophila # Pathway: Glycine, serine and threonine metabolism [PATH:krh00260]; Metabolic pathways [PATH:krh01100] # 1 123 1 123 376 214 93.0 5e-55 MTGTDDGVATTRSPEVAVIGGGIVGLSTAYALREQCVPVRLYEAGLPGTGQSGGESRIFR HAHDDPRLVAFARESRGVWDEWAEHFDVELVSSDGVLAIGDSVLARLRVLNQVGGVEAHE IDAVAATLLSAVARTS Prediction of potential genes in microbial genomes Time: Thu May 26 07:14:38 2011 Seq name: gi|289557963|gb|ADCD01000040.1| Micrococcus luteus SK58 ctg1119142780319, whole genome shotgun sequence Length of sequence - 12888 bp Number of predicted genes - 13, with homology - 13 Number of transcription units - 3, operones - 2 average op.length - 6.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 3 - 276 278 ## Mlut_07130 hypothetical protein 2 1 Op 2 . - CDS 350 - 1141 688 ## COG0289 Dihydrodipicolinate reductase 3 1 Op 3 4/0.000 - CDS 1185 - 2504 1172 ## COG0612 Predicted Zn-dependent peptidases 4 1 Op 4 26/0.000 - CDS 2607 - 4868 1350 ## PROTEIN SUPPORTED gi|62291006|ref|YP_222799.1| polynucleotide phosphorylase/polyadenylase - Term 5098 - 5154 15.5 5 1 Op 5 . - CDS 5163 - 5432 451 ## PROTEIN SUPPORTED gi|239917237|ref|YP_002956795.1| SSU ribosomal protein S15P 6 2 Tu 1 . + CDS 5564 - 6568 600 ## Mlut_07080 CAAX amino terminal protease family 7 3 Op 1 1/0.000 - CDS 6546 - 7355 421 ## COG0500 SAM-dependent methyltransferases 8 3 Op 2 . - CDS 7385 - 8362 401 ## PROTEIN SUPPORTED gi|163762565|ref|ZP_02169630.1| ribosomal protein S2 9 3 Op 3 . - CDS 8362 - 8793 411 ## Mlut_07050 hypothetical protein 10 3 Op 4 . - CDS 8805 - 9173 364 ## Mlut_07040 hypothetical protein 11 3 Op 5 26/0.000 - CDS 9170 - 9967 648 ## COG0130 Pseudouridine synthase 12 3 Op 6 32/0.000 - CDS 10149 - 10601 467 ## COG0858 Ribosome-binding factor A 13 3 Op 7 . - CDS 10682 - 12886 1924 ## COG0532 Translation initiation factor 2 (IF-2; GTPase) Predicted protein(s) >gi|289557963|gb|ADCD01000040.1| GENE 1 3 - 276 278 91 aa, chain - ## HITS:1 COG:no KEGG:Mlut_07130 NR:ns ## KEGG: Mlut_07130 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 91 28 118 172 141 98.0 8e-33 MSKVWVGFVCLLVLLFAGFALNASVALVRAPQPLAKAIGAGVILVVLVTVAVLAREVWFG RQTERLADQLEAEGGLPEDDLPRSPGGRIDR >gi|289557963|gb|ADCD01000040.1| GENE 2 350 - 1141 688 263 aa, chain - ## HITS:1 COG:Cgl1927 KEGG:ns NR:ns ## COG: Cgl1927 COG0289 # Protein_GI_number: 19553177 # Func_class: E Amino acid transport and metabolism # Function: Dihydrodipicolinate reductase # Organism: Corynebacterium glutamicum # 18 262 4 248 248 228 48.0 7e-60 MTETRTPSAVSAPDDVPRVAILGARGRMGRHAVPAVRAAEGLELVAELGSQDRLDAVLDA GATHVLDLTVPDASPENVAFAVEHGLHTVVGTSGWVPERRERLEAQLAEHPGVGVLIAPN FSVGSVLASAFAAQAARYFESVELVELHHPDKVDAPSGTAVRTAELIGAARDAAGVPVSP DATEHDPDGARGAVVHGVHVHAVRLRGLEAHQEVLLGGPGEQLVVRHDAFDRGAYMPGVV LGLRTVASRPGLTYGLDGYLDLG >gi|289557963|gb|ADCD01000040.1| GENE 3 1185 - 2504 1172 439 aa, chain - ## HITS:1 COG:ML0855 KEGG:ns NR:ns ## COG: ML0855 COG0612 # Protein_GI_number: 15827381 # Func_class: R General function prediction only # Function: Predicted Zn-dependent peptidases # Organism: Mycobacterium leprae # 26 438 3 408 424 299 43.0 8e-81 MSVHREIPLDFDGVLADEGNGSVVRRSVLPGGVRVLTEAMPDQRSVTIGYWVAVGSRDES PEGYGATHFLEHLLFKGTPTRTAMDIAAAFDRVGGESNAGTAKESTVYHARVLDEDLPMA VEVLTDMLTSSLIDPDELETERGVILEELAMDADDPVDVAHEKLAEVMLDGHPLGRPIGG TPETIRAVTRDHVVGHYTHWYRPDELVVTAAGHLDHDEVCRLVLAALRASGWELTPGALP APRRAVDTAGAAASRVRTGTHTVTKAVEQANVLVGGRSLSTTDPDRFALGVMQSVLGGGM SSRLFQEIRERRGLAYNTYSFSAGYSDAGYWGLYAGCQPDRVEEVAALMEAELDRMAEAD VTEEELARAHGQICGGTVLGMESTGARMSRLGRAELVTGEYVDLAASLARVREVDAGQVR AVAARLAAGDRARVVVAPA >gi|289557963|gb|ADCD01000040.1| GENE 4 2607 - 4868 1350 753 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|62291006|ref|YP_222799.1| polynucleotide phosphorylase/polyadenylase [Brucella abortus bv. 1 str. 9-941] # 18 753 11 713 714 524 43 1e-148 MEGPEITFAEAVIDNGSYGKRTVRFETGRLAQQAAGAAMVYIDEETSMLSATTVGKSPRE GFDFFPLTVDVEERMYAAGRIPGSFFRREGRPSTDAILTCRLIDRPLRPAFVKGIRNEVQ VVVTVTSIAPDEIYDTVAINAASLSTQLSGLPFSGPIGGVRMALMDDGSGTRQWVAFPKH SQLEGAVFNMAVAGRVVGDDVAIMMVEAEATPDSWTLVKERGAQAPTEEIVAEGLEAAKP FIRALCEAQADLVKRAGKDPVDVPVFQDYQDDAYAAVEKLATDRLAEIFSIGDKQERESA SDAYLLEVLEELAGEGKDFAERKGEIAKAYGSLTKQIVRRRILTDQVRIDGRGLTDIRKL TAEVEVLPRVHGSAIFERGETQIMGVTTLNMLKMEQQIDSLAPETAKRYMHHYNFPPYST GETGRVGSPKRREIGHGALAERALVPVLPAREEFPYAIRQVSEALGSNGSTSMGSVCAST LSLLNAGVPLRAPVAGIAMGLVSAEVDGQTQYAALTDILGAEDAFGDMDFKVAGTAEFVT AIQLDTKLDGIPASVLAAALTQAREARLHILSVLNAAIDAPDEMAPTAPRIISVRIPVDK IGAVIGPKGAMINQIQDDTGADITIEDDGTVLIGATDGASAEAARSAVNAIANPQVPEVG ERYLGTVVKLTTFGAFVSLTPGKDGLLHISELRKLNEGKRVDDVEDVLGVGQKVQVEITK IDDRGKLSLSPVVAESDAVAETADAIESSQTEA >gi|289557963|gb|ADCD01000040.1| GENE 5 5163 - 5432 451 89 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|239917237|ref|YP_002956795.1| SSU ribosomal protein S15P [Micrococcus luteus NCTC 2665] # 1 89 1 89 89 178 98 2e-44 MALDPAVKQQIIKEYATHEGDTGSPEVQIAVLSRRIKDLTEHLKEHKHDHHTRRGLMGLV GRRRRMLGYLQKVDIERYRALIERLGLRK >gi|289557963|gb|ADCD01000040.1| GENE 6 5564 - 6568 600 334 aa, chain + ## HITS:1 COG:no KEGG:Mlut_07080 NR:ns ## KEGG: Mlut_07080 # Name: not_defined # Def: CAAX amino terminal protease family # Organism: M.luteus # Pathway: not_defined # 1 334 1 334 334 365 94.0 1e-99 MSTPPVPHSPAPPSFPVRPPAPPLDLPLIGHGYPALLRTPRARWWNPLASFGLVLAGLVG LLVLGGVLGALALIATSGPALLGAADPTDVTDLDLYSAPMVLLNNLLLAALIGVALLAVA LGHPVAARFVHSVEGRVRWRWLARCVVVLTPLFLAYVLGTWALDSAPTAPRAQDWVWLLV MAFVLTPFQAAGEEYLFRGWLLLAVGTWIRRPVVAVAVASVVSAVVFGLAHGSLDPWILL DLAAFAVAAVLLTWRTGGLEAAVALHVVNNVVIIAVGTLVGTVEDSYVGAETAGSPAATL LSVAVVAVATALLMWQARRAGIARTVPVTVGARP >gi|289557963|gb|ADCD01000040.1| GENE 7 6546 - 7355 421 269 aa, chain - ## HITS:1 COG:Cgl1397 KEGG:ns NR:ns ## COG: Cgl1397 COG0500 # Protein_GI_number: 19552647 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Corynebacterium glutamicum # 12 253 26 251 271 151 41.0 1e-36 MPNLPGRPARARRAGPNPFETGGEHYDAVRPSYPAAAVDRVLADAADGADVVELGAGTGL FTRLLAARPADRVRTVTALEPSASMRAVLEREVAAGAGGRVRAVPGTGEATGLPAASADV VVAAQAWHWMDPGAASAEAARVLRPGGRLAAVWNQLDTAVPWVHRLTRIMHAGDVHAARP EQRRFAAPFGTEEHARWAWTQPMTAAGLHGLMASRSYWLRADERIRTRMTANLDWYLHEH LGHAADAVLQVPYVTVAWWAAPVRGGRPR >gi|289557963|gb|ADCD01000040.1| GENE 8 7385 - 8362 401 325 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762565|ref|ZP_02169630.1| ribosomal protein S2 [Bacillus selenitireducens MLS10] # 13 319 14 313 317 159 34 1e-38 MRVWNSLDEVPTDLPRTVVTLGNFDGVHRGHREVLRRVVELARARDALAVAVTFTPHPRA VHHPEAPHVDIISPEQRVVLLDEAGLDAVLLQRYTLEFADQSPEEFVRGMLVHGLHAAVV VVGHDVRFGRGNTGDVAEMVRLGARYGFEVEAVEEFPAEHGAEPERRCSSTWVREALAAG DVAQAAAVLGRHHVLAGEVVHGFARGRELGFPTANLETDVQGMIPADGVYAGWVHDAHGG VWPAAISIGSNPTFEDVSRVVEAHVIDRHDERVEDFDLYGQHIEVEFVARLRGMVAYEGV EKLVAQITQDVDEARAILATTPSDR >gi|289557963|gb|ADCD01000040.1| GENE 9 8362 - 8793 411 143 aa, chain - ## HITS:1 COG:no KEGG:Mlut_07050 NR:ns ## KEGG: Mlut_07050 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 143 1 143 143 209 96.0 2e-53 MPPSDGAPARNQGLGRIIVMVYAVFALSASARSLFQILTQFDAAPVAYTLSAVAAVVYIV ATLALARSGPRAWAVALGAVLVELAGVVGVGLWTVLDPGMFAHDTVWSRFGAGYGYVPLV LPVVGLIWLLTHRPVRPAEAGAL >gi|289557963|gb|ADCD01000040.1| GENE 10 8805 - 9173 364 122 aa, chain - ## HITS:1 COG:no KEGG:Mlut_07040 NR:ns ## KEGG: Mlut_07040 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 122 1 122 122 189 99.0 3e-47 MILDAWFWTGLVIGAVSFVVCVVMTAIRRHPADASILSVAAVELFTLVYAAAAAVRQLGG DTLNGPGWEFWGYILTALIVPVIAVGWAVTDKTRWSNLVLAVVGPTIAVMLHRMQVIWFG QW >gi|289557963|gb|ADCD01000040.1| GENE 11 9170 - 9967 648 265 aa, chain - ## HITS:1 COG:Cgl1933 KEGG:ns NR:ns ## COG: Cgl1933 COG0130 # Protein_GI_number: 19553183 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridine synthase # Organism: Corynebacterium glutamicum # 1 246 46 289 297 196 48.0 3e-50 MATGLLVVGVNKATRLLTAITGTDKTYTATIRLGQSTVTDDAEGEVVQTRLANAVTPERV AEQVAALTGEILQVPSAVSAVKVAGRRAYDRVRAGEDVTLDARPVTVHEFTVHELRRLDG GRLVDLDVTVRCSSGTYIRALARDLGEALETGGHLTALRRTAVGPFDVADALTLEALAER FAMTELSEAAAGLFPVRELTEDEAHELAFGRVVAPTGTGETLVAGRAPDGRVIALVSDVR RRGADVAKPQLVFAPAEGPGQGRTA >gi|289557963|gb|ADCD01000040.1| GENE 12 10149 - 10601 467 150 aa, chain - ## HITS:1 COG:Cgl1938 KEGG:ns NR:ns ## COG: Cgl1938 COG0858 # Protein_GI_number: 19553188 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome-binding factor A # Organism: Corynebacterium glutamicum # 1 138 1 142 149 115 52.0 4e-26 MADPARAGRLAQRIKVLVAEALRRGVKDDRVEPVTVTEVRVTNDLQHATVYYTVLGDEAT VAAAHEGIQDNRGILRREVGRGLTIRLVPTLEFVADTVPEAAAHLEDVLRVAKERDAELA KAREGASYAGDADPYRAAEPDADADDAPHA >gi|289557963|gb|ADCD01000040.1| GENE 13 10682 - 12886 1924 734 aa, chain - ## HITS:1 COG:MT2905 KEGG:ns NR:ns ## COG: MT2905 COG0532 # Protein_GI_number: 15842380 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation initiation factor 2 (IF-2; GTPase) # Organism: Mycobacterium tuberculosis CDC1551 # 91 733 263 899 900 740 66.0 0 MRSGREDRAPRPGGGPRPQAGAGGPRPGGPRPAAGAGGPRPGGPRPNPGMMPKQITPAPQ PARGRGRPGGGPGGGPGRPGGPGGRGGRGNAQGAFGRGGGPRKGRKSKRAKRQEFEQQHT REIGGVKVPKGDGTTVLRLRRGASLADFAEKIRADVADLVKVLFTLGEMASANQSLDEET FQLLGDELGYKVQIVSPEDEDKELLEAFDIDLEAEEANEDEADLEPRPAVVTVMGHVDHG KTRLLDAIRSSNVIEGEAGGITQHIGAYQVPVEHEGEQRRLTFIDTPGHEAFTAMRARGA KVTDIAVLVVAADDGVMPQTVEALNHAQSAGVPIVVAVNKIDKDTAAPDKIRGQLTEYGL VPEEYGGDTMFVDVSARNNINIDQLLEAILLTADAALELTANPHKAARGVAIEANLDKGR GAVVTVLVQTGTLRVGDTMVVGSAHGRVRAMFDENGNAVEAADPSRPVQVLGLSSVPRAG DSFLVTDDERTARQIAERREAADRNAQLAKRRKRITLEDFDQAVAEGKLDTLNLIIKGDA SGAVEALEDSLLKIEVGEDEVQLRVIHRGVGAITQNDVNLATVDNAIIIGFNVRPAERVA DLADREGVDMRFYSVIYDAIDDIENALKGMLKPEYEEVELGSAEVREVFRSSKWGNIAGS LVRSGLIRRNAQARLVRDGVVVSDHLKIESLRRFKDDATEVREGYECGIGLGSFDDIKEG DVIETFEMQEKPRV Prediction of potential genes in microbial genomes Time: Thu May 26 07:14:57 2011 Seq name: gi|289557949|gb|ADCD01000041.1| Micrococcus luteus SK58 ctg1119142780348, whole genome shotgun sequence Length of sequence - 10899 bp Number of predicted genes - 13, with homology - 13 Number of transcription units - 6, operones - 3 average op.length - 3.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 3 - 299 157 ## Mlut_11480 predicted transcriptional regulator 2 1 Op 2 12/0.000 + CDS 376 - 1848 1470 ## COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component 3 1 Op 3 41/0.000 + CDS 1883 - 3088 1073 ## COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component 4 1 Op 4 . + CDS 3135 - 3905 301 ## COG0396 ABC-type transport system involved in Fe-S cluster assembly, ATPase component 5 1 Op 5 . + CDS 3902 - 4228 308 ## COG2151 Predicted metal-sulfur cluster biosynthetic enzyme 6 2 Tu 1 . - CDS 4337 - 5284 815 ## COG2321 Predicted metalloprotease 7 3 Tu 1 . + CDS 5407 - 7005 1596 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains 8 4 Op 1 . - CDS 7036 - 7950 842 ## COG3346 Uncharacterized conserved protein 9 4 Op 2 . - CDS 7947 - 8288 254 ## Mlut_11560 hypothetical protein 10 4 Op 3 . - CDS 8315 - 8782 292 ## Mlut_11570 hypothetical protein 11 5 Op 1 10/0.000 + CDS 8953 - 9699 252 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 12 5 Op 2 . + CDS 9737 - 10495 727 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 13 6 Tu 1 . - CDS 10569 - 10898 137 ## COG0560 Phosphoserine phosphatase Predicted protein(s) >gi|289557949|gb|ADCD01000041.1| GENE 1 3 - 299 157 98 aa, chain + ## HITS:1 COG:no KEGG:Mlut_11480 NR:ns ## KEGG: Mlut_11480 # Name: not_defined # Def: predicted transcriptional regulator # Organism: M.luteus # Pathway: not_defined # 1 98 112 209 209 181 97.0 9e-45 GGRETALQERTRILARVLDEAGYAGTLRHFGAGLAPTLRADQICQGHCPFQGIPARHPEF CEEETALFARLLEVDVRRLSTLAAGAHVCTTHVPLGRD >gi|289557949|gb|ADCD01000041.1| GENE 2 376 - 1848 1470 490 aa, chain + ## HITS:1 COG:Cgl1527 KEGG:ns NR:ns ## COG: Cgl1527 COG0719 # Protein_GI_number: 19552777 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, permease component # Organism: Corynebacterium glutamicum # 10 490 2 481 481 778 78.0 0 MTDQIVQRDSTETADPGVIQEILDKNPELNAIGAYQYGWADSDAAGEKAVRGLNEDVVRD ISGKKDEPEWMRDLRLKALKYFERKPMPAWGPDLSGIDFDNIKYFVRSTEGQAKTWEDLP EDIRNTYERLGIPEAERERLVAGVAAQYESEVVYHQIREDLEEQGVVFLDTDTALKEHPE IFEEYFGTVIPVGDNKFASLNTAVWSGGSFVYVPKGVHVEIPLQAYFRINTENMGQFERT LIIADEDSYVHYIEGCTAPIYQSDSLHSAVVEIVVKKNARVRYTTIQNWSTNVYNLVTKR AVVEAGGTMEWIDGNIGSKVTMKYPAVYLTGEHATGETLSVAFAGKDQHQDTGSKMVHMA PHTNSSIVSKSVARSGGRAAYRGLVQIAEGANGSANSVVCDALLVDTVSRSDTYPYIDIR EDDVTLGHEATVSKVSEEQLFYLMSRGMSEDEAMAMIVRGFIEPIARELPMEYALELNKL IELQMEGSVG >gi|289557949|gb|ADCD01000041.1| GENE 3 1883 - 3088 1073 401 aa, chain + ## HITS:1 COG:MT1509 KEGG:ns NR:ns ## COG: MT1509 COG0719 # Protein_GI_number: 15840922 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, permease component # Organism: Mycobacterium tuberculosis CDC1551 # 30 400 14 389 397 352 54.0 8e-97 MIPGMGEEGEKLTVAQNPAARAGGRERNAAGSRADRLSSFELSDFPVLTGREEDWRFTPL KRLGGLHLPEGDDARLTGAAPAVTVAEQAGVTVETVARDDARVGSVLTPDDRVSAAAWNS VSEATVVTISGEVAEPVRIDVVGSSADPAAMHLTVLVEENAQADVVIAHRGTAVLAQNVE FDVRRDARLNVVALQAWEGDAVHVSAQQASVATNAHFKHVAVSYGGGVVRLTPTARFAAE RGEAEMCGLYFADAGQHLENRLFVDHNQPDCVSNVLYKGALQGTDARTVWVGDVLIRKEA EGTDTYEKNQNLLLSDGARADSVPNLEIETGVIEGAGHASATGRFDETQLFYLMARGISE TEARRLIVRGFLNEIIQKIGIGDVEDELTAVMEDELRIAQL >gi|289557949|gb|ADCD01000041.1| GENE 4 3135 - 3905 301 256 aa, chain + ## HITS:1 COG:Cgl1525 KEGG:ns NR:ns ## COG: Cgl1525 COG0396 # Protein_GI_number: 19552775 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, ATPase component # Organism: Corynebacterium glutamicum # 1 148 1 151 252 197 64.0 2e-50 MATLQITDLHVQIATENGPKEILKGLSLTIETGETHAIMGPNGSGKSTLASTIAGHPRYE VTSGSITLDGEDVLEMSVDERAQAGLFLAMQYPVEIPGVTMTNFLRTAKTALDGQAPSLR TWTKDVKGAFEALQIDPAFMNRQRQRGLLRRREEARRDPPARAVQAQVRDPRRDRLRPRR RRAAHRLRGRQPRPGAERDGHPADHPLHADPQLHQAGPRARAGGRPRRRVRRPGARRAAR GRGLRPLREGRGGGLR >gi|289557949|gb|ADCD01000041.1| GENE 5 3902 - 4228 308 108 aa, chain + ## HITS:1 COG:MT1513 KEGG:ns NR:ns ## COG: MT1513 COG2151 # Protein_GI_number: 15840926 # Func_class: R General function prediction only # Function: Predicted metal-sulfur cluster biosynthetic enzyme # Organism: Mycobacterium tuberculosis CDC1551 # 1 108 1 115 115 122 59.0 2e-28 MTETTNQAPTEDIREALKDVIDPELGVNVVDLGLLYGLHYADDGALLVDMTLTTAACPLT DEIEDQVSRAIGTMVDEWRLNWVWMPPWGPERITEDGRDQMRALGFNI >gi|289557949|gb|ADCD01000041.1| GENE 6 4337 - 5284 815 315 aa, chain - ## HITS:1 COG:MT2651 KEGG:ns NR:ns ## COG: MT2651 COG2321 # Protein_GI_number: 15842113 # Func_class: R General function prediction only # Function: Predicted metalloprotease # Organism: Mycobacterium tuberculosis CDC1551 # 82 313 70 292 293 213 49.0 5e-55 MSFNENVQIDAGRARSGGGGGLGGRGIAIGGGGGLLALLLAIFAPGLAEQLGIDTGGGSV GQSQYQQQTGSGGQGQPLSDEECASGADANQNTDCRVIATTEAADEFWGEYLAQFSDIQW RQPQLTLFQGGVSTGCGSASSATGPFYCPADESMYFDTAFFETLQTDFGAEGGPLAEEYI VAHEYGHHVQQVTGYLQHSKDGTTGPTSGAVRAELQADCFAGMWAGHAASTVDPESGESF LKPISQDQLRQAIDAASAVGDDRIQSTHTGRVDPEAFTHGTSEQRMAWFMRGYQSSQQEP DIRQCDTFRASSLDI >gi|289557949|gb|ADCD01000041.1| GENE 7 5407 - 7005 1596 532 aa, chain + ## HITS:1 COG:ML1816 KEGG:ns NR:ns ## COG: ML1816 COG0488 # Protein_GI_number: 15827973 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Mycobacterium leprae # 1 532 1 545 545 634 62.0 0 MLTVTDVELRVGARLLMDEVNFRVDKGDKVGLVGRNGAGKTTLTKVLAGGGQPTAGTVTR TGRIGYLPQDPKVEDMDQSGRDRILSARDLDQTIRRMREAEAGMAAVDDAERERAMNRYS RLEAEFEARGGYAAESEAARITSNLGLPDRVLDQPLHTLSGGQRRRVELARILFSDADIM LLDEPTNHLDHDSIVWLRDYLKTYSGGLLMISHDVELMEMTVNKVLYLDANRQTMDVYNM TWKNYLAQRQQDEARRRREFANAEKKASALMAQAEKMRAKATKATAAQNMIKRAERLMRG VEGERAVDRVAAIRFPTPQASGKTPLRAENLSKSYGSLEIFTGVDLAIDRGSRVVILGYN GAGKTTLLRMLAGEETPDTGEVQAGHGLKLGYFAQEHDTLDQDASVLDNMRHAAPQLGDT QARTLLGSFLFQGDDVDKPARVLSGGEKTRLALATLVASSANVLLLDEPTNNLDPASREE ILNALHQYEGAVVLVTHDEGAVEALDPERVVLLPDGVEDLWNDDYRDLITLA >gi|289557949|gb|ADCD01000041.1| GENE 8 7036 - 7950 842 304 aa, chain - ## HITS:1 COG:ML1644 KEGG:ns NR:ns ## COG: ML1644 COG3346 # Protein_GI_number: 15827867 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Mycobacterium leprae # 31 266 12 248 270 98 32.0 2e-20 MSTPAPVTAPTARDAERLPPLRFGFLATGPWILGFVVCVLFAFLCHALAQWQWDRRVEVQ HRVNRVLENYDDDPVPFAEASRLFTAFQTEDEWTPVTLTGEYLVDETLIVRNRPRAGQPG YEVLVPFRTDEGPVVVVDRGWLPVGNSPGRPDAVPAPPAGHAEVVVRVKPGEPALDREAP DGQVPSIDLAEIADTVGGPVAGTAYGIMVTEDPAVEPMPQKLVEPTLDEGPHLSYAIQWY LFAAMGFGVWGYSAWMRARNDRADALDHAADDGLLSAHRVPRAKPVRRRDGRLTDEEAED ALFD >gi|289557949|gb|ADCD01000041.1| GENE 9 7947 - 8288 254 113 aa, chain - ## HITS:1 COG:no KEGG:Mlut_11560 NR:ns ## KEGG: Mlut_11560 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 113 11 123 123 167 94.0 1e-40 MDLLGALASGRLDPAAGASTARPPHAAADGPERPVCSRRGCAAEAAWALEWNNPRVHAPD RVKTWLACADHRPFLDDFLSARGFLRRSRPLDPSATQAPEVDTPETPQEPPRP >gi|289557949|gb|ADCD01000041.1| GENE 10 8315 - 8782 292 155 aa, chain - ## HITS:1 COG:no KEGG:Mlut_11570 NR:ns ## KEGG: Mlut_11570 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 155 1 155 155 232 96.0 4e-60 MTSSAAGSRAGRPAHAGRGATPEVQGVTTAAAGRSADREARMRVYLVQMLVRTACFVAAL FTHGWWQLGFILGAVVLPYVAVVRVNNTGPQQAGTLRAVPAQGPALTPRPDDTAAPEPIV LTGDLVDDPRDRAPRALGRGSSSAGGPGLPGRGAA >gi|289557949|gb|ADCD01000041.1| GENE 11 8953 - 9699 252 248 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 17 242 4 238 242 101 31 2e-21 MADQTTTPAADAQAAGRSVLVTGGNRGIGLAIARAFAANGDRVAITSRSGEGPEGVLAVR ADVTDAASVDAAFREVEEAHGPVEVLVANAGITHDQLLLRMSEDDFTSVIDTNLTGAFRV VQRATKGMMRLKRGRIVLVSSVVGLLGSPGQVNYAASKSGLVGMARSITRELGARGVTAN VVAPGYIDTEMTQSLDDELKAQYKTSIPAGRFAAPEEVAGVVRWLASDEAAYISGAVIPV DGGLGMGH >gi|289557949|gb|ADCD01000041.1| GENE 12 9737 - 10495 727 252 aa, chain + ## HITS:1 COG:BS_ycdF KEGG:ns NR:ns ## COG: BS_ycdF COG1028 # Protein_GI_number: 16077352 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Bacillus subtilis # 4 94 3 93 258 79 47.0 6e-15 MTEQDLAGRGVVVTGSSRGIGAATAELLAARGAGVVVNYRQKAPRANKVVQKIEEAGGRA VAVGGDVTVAEDRAALLDAAVEHFGSLDVLVLNASGGMESQFGEDYALKLNRDAQAALAD AALERMDGGGQIVFVTSHQAHFIDEVATMDSYEPVARSKRAGEDALRERIPAFTEKGVGF VVVSGDMIEGTITATLLNRAEPGAIEARREAAGRLYSVEEFAAEIASLVGRDDLEVGHTE LVGGAEDFLQQS >gi|289557949|gb|ADCD01000041.1| GENE 13 10569 - 10898 137 109 aa, chain - ## HITS:1 COG:Cgl2471_2 KEGG:ns NR:ns ## COG: Cgl2471_2 COG0560 # Protein_GI_number: 19553721 # Func_class: E Amino acid transport and metabolism # Function: Phosphoserine phosphatase # Organism: Corynebacterium glutamicum # 17 109 118 210 233 95 55.0 3e-20 QVLAPLAEAWGVHAYCANELEVRDGHLTGKVLGDVVDRAAKAAMLRAWAEDAGLTPEQAV GVGDGANDIDLLEAAGCGVALCAKPILREHADVVVDVPSFTPLRWLLGL Prediction of potential genes in microbial genomes Time: Thu May 26 07:15:45 2011 Seq name: gi|289557843|gb|ADCD01000042.1| Micrococcus luteus SK58 ctg1119142780307, whole genome shotgun sequence Length of sequence - 108324 bp Number of predicted genes - 101, with homology - 99 Number of transcription units - 59, operones - 25 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 2 - 893 779 ## COG1132 ABC-type multidrug transport system, ATPase and permease components 2 1 Op 2 . - CDS 890 - 1600 185 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 3 2 Op 1 . + CDS 965 - 5875 2110 ## Mlut_21710 heat repeat protein 4 2 Op 2 . + CDS 5934 - 7097 863 ## COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase 5 3 Tu 1 . - CDS 7114 - 7704 367 ## Mlut_21730 hypothetical protein 6 4 Tu 1 . + CDS 7995 - 11372 3115 ## COG1554 Trehalose and maltose hydrolases (possible phosphorylases) 7 5 Op 1 19/0.000 - CDS 11483 - 12832 969 ## COG4585 Signal transduction histidine kinase 8 5 Op 2 . - CDS 12829 - 13494 568 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 9 6 Tu 1 . + CDS 13701 - 13931 71 ## gi|289705340|ref|ZP_06501736.1| conserved domain protein 10 7 Tu 1 . - CDS 13954 - 16590 1451 ## COG1620 L-lactate permease 11 8 Op 1 . + CDS 16767 - 18116 1032 ## Mlut_21890 histidine kinase 12 8 Op 2 . + CDS 18173 - 18865 652 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 13 9 Tu 1 . + CDS 19224 - 19490 265 ## Mlut_21910 hypothetical protein 14 10 Tu 1 . - CDS 19504 - 20997 571 ## COG1309 Transcriptional regulator 15 11 Op 1 36/0.000 + CDS 20245 - 21087 615 ## COG1136 ABC-type antimicrobial peptide transport system, ATPase component 16 11 Op 2 . + CDS 21090 - 23624 1922 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 17 12 Tu 1 . - CDS 23762 - 24772 837 ## COG0385 Predicted Na+-dependent transporter 18 13 Tu 1 . - CDS 24891 - 25886 779 ## Mlut_21980 hypothetical protein 19 14 Op 1 1/0.176 - CDS 26064 - 27926 197 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 20 14 Op 2 . - CDS 27985 - 28455 387 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 21 14 Op 3 . - CDS 28481 - 30313 1238 ## COG1279 Lysine efflux permease 22 14 Op 4 . - CDS 30399 - 30782 380 ## Mlut_22030 hypothetical protein 23 15 Op 1 40/0.000 - CDS 30923 - 32614 1110 ## COG0642 Signal transduction histidine kinase 24 15 Op 2 . - CDS 32595 - 33323 681 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 25 16 Tu 1 . - CDS 33658 - 34323 320 ## PROTEIN SUPPORTED gi|163754278|ref|ZP_02161401.1| 30S ribosomal protein S15 26 17 Op 1 33/0.000 + CDS 34605 - 35681 959 ## COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component 27 17 Op 2 20/0.000 + CDS 35691 - 36746 775 ## COG0609 ABC-type Fe3+-siderophore transport system, permease component 28 17 Op 3 35/0.000 + CDS 36743 - 37813 897 ## COG0609 ABC-type Fe3+-siderophore transport system, permease component 29 17 Op 4 2/0.118 + CDS 37810 - 38679 598 ## COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components 30 17 Op 5 . + CDS 38676 - 39731 759 ## COG2375 Siderophore-interacting protein 31 18 Tu 1 . + CDS 39833 - 40498 670 ## COG0702 Predicted nucleoside-diphosphate-sugar epimerases 32 19 Tu 1 . - CDS 40642 - 41421 677 ## Mlut_22140 hypothetical protein - Term 41482 - 41525 6.5 33 20 Op 1 . - CDS 41546 - 42916 1190 ## COG2066 Glutaminase 34 20 Op 2 . - CDS 42918 - 43580 570 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 35 21 Op 1 . + CDS 43667 - 45127 1155 ## COG0277 FAD/FMN-containing dehydrogenases 36 21 Op 2 . + CDS 45124 - 45579 275 ## COG0824 Predicted thioesterase 37 21 Op 3 . + CDS 45645 - 46487 804 ## COG2357 Uncharacterized protein conserved in bacteria 38 22 Tu 1 . + CDS 46637 - 47479 493 ## COG0398 Uncharacterized conserved protein 39 23 Op 1 . - CDS 47361 - 47744 300 ## COG5646 Uncharacterized conserved protein 40 23 Op 2 . - CDS 47819 - 48373 575 ## Mlut_22230 hypothetical protein 41 23 Op 3 . - CDS 48384 - 49640 921 ## Mlut_22240 polysaccharide deacetylase 42 24 Tu 1 . + CDS 48765 - 50648 448 ## Mlut_22270 conserved hypothetical protein TIGR02246 43 25 Op 1 . - CDS 50661 - 51221 557 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 44 25 Op 2 . - CDS 51319 - 53778 2081 ## COG1511 Predicted membrane protein 45 26 Tu 1 . + CDS 52919 - 53479 204 ## PROTEIN SUPPORTED gi|166999212|ref|ZP_02265058.1| 60S ribosomal protein L19 46 27 Op 1 . - CDS 53778 - 55169 633 ## Mlut_22300 hypothetical protein 47 27 Op 2 . - CDS 55266 - 56033 538 ## COG0730 Predicted permeases 48 28 Tu 1 . + CDS 56108 - 57388 922 ## COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases 49 29 Op 1 . - CDS 57416 - 58306 669 ## Achl_0157 peptidase C60 sortase A and B 50 29 Op 2 . - CDS 58336 - 58998 668 ## gi|289705383|ref|ZP_06501779.1| excalibur domain protein 51 30 Tu 1 . - CDS 59191 - 59403 207 ## Mlut_22380 hypothetical protein 52 31 Tu 1 . - CDS 59507 - 60715 837 ## Mlut_22400 hypothetical protein 53 32 Op 1 2/0.118 + CDS 60802 - 61854 819 ## COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 54 32 Op 2 . + CDS 61923 - 63221 1136 ## COG3239 Fatty acid desaturase + Term 63254 - 63303 1.3 55 33 Op 1 . - CDS 63383 - 63862 457 ## Mlut_22480 hypothetical protein 56 33 Op 2 . - CDS 63937 - 64191 306 ## Mlut_22520 glutaredoxin-like protein 57 34 Tu 1 . + CDS 64227 - 65045 647 ## COG0421 Spermidine synthase 58 35 Tu 1 . - CDS 65061 - 66221 431 ## COG1846 Transcriptional regulators 59 36 Tu 1 . + CDS 65595 - 66830 1090 ## COG0477 Permeases of the major facilitator superfamily 60 37 Op 1 . - CDS 66871 - 67902 739 ## COG3238 Uncharacterized protein conserved in bacteria 61 37 Op 2 . - CDS 67920 - 68483 370 ## PROTEIN SUPPORTED gi|227383977|ref|ZP_03867395.1| acetyltransferase, ribosomal protein N-acetylase 62 37 Op 3 . - CDS 68575 - 69150 409 ## Mlut_22610 hypothetical protein + Prom 69150 - 69209 1.8 63 38 Op 1 . + CDS 69398 - 70699 1269 ## COG0133 Tryptophan synthase beta chain 64 38 Op 2 . + CDS 70754 - 71455 670 ## COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases 65 39 Tu 1 . - CDS 71486 - 72514 837 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 66 40 Op 1 . - CDS 72624 - 74255 1180 ## COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold 67 40 Op 2 . - CDS 74336 - 75505 967 ## COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases 68 41 Tu 1 . - CDS 75771 - 76649 769 ## COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase + Prom 76752 - 76811 1.8 69 42 Op 1 . + CDS 76877 - 78349 688 ## PROTEIN SUPPORTED gi|145634045|ref|ZP_01789756.1| 50S ribosomal protein L21 70 42 Op 2 1/0.176 + CDS 78383 - 79384 756 ## COG3938 Proline racemase 71 42 Op 3 1/0.176 + CDS 79417 - 80148 577 ## COG1802 Transcriptional regulators 72 42 Op 4 7/0.059 + CDS 80145 - 81341 827 ## COG0665 Glycine/D-amino acid oxidases (deaminating) 73 42 Op 5 3/0.059 + CDS 81338 - 81652 202 ## COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases 74 42 Op 6 . + CDS 81642 - 83156 859 ## COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases 75 42 Op 7 . + CDS 83189 - 84673 1103 ## COG1012 NAD-dependent aldehyde dehydrogenases 76 43 Tu 1 . - CDS 84681 - 86243 623 ## PROTEIN SUPPORTED gi|145634045|ref|ZP_01789756.1| 50S ribosomal protein L21 77 44 Tu 1 . - CDS 86377 - 87273 581 ## Mlut_22770 predicted transcriptional regulator 78 45 Op 1 10/0.000 + CDS 87432 - 88568 952 ## COG2391 Predicted transporter component 79 45 Op 2 . + CDS 88621 - 88848 226 ## COG0425 Predicted redox protein, regulator of disulfide bond formation 80 46 Tu 1 . - CDS 89143 - 90018 684 ## COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases - Prom 90082 - 90141 1.5 81 47 Op 1 2/0.118 + CDS 90089 - 91420 908 ## COG3395 Uncharacterized protein conserved in bacteria 82 47 Op 2 2/0.118 + CDS 91463 - 92260 659 ## COG3622 Hydroxypyruvate isomerase 83 47 Op 3 1/0.176 + CDS 92257 - 93045 459 ## COG1349 Transcriptional regulators of sugar metabolism 84 47 Op 4 3/0.059 + CDS 93056 - 94015 610 ## COG0451 Nucleoside-diphosphate-sugar epimerases 85 47 Op 5 . + CDS 94058 - 95455 1115 ## COG2610 H+/gluconate symporter and related permeases 86 48 Tu 1 . - CDS 95433 - 95699 75 ## 87 49 Tu 1 . + CDS 95586 - 96089 361 ## COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases 88 50 Tu 1 . - CDS 96170 - 97231 947 ## COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases 89 51 Op 1 . + CDS 97578 - 98996 1321 ## COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 90 51 Op 2 . + CDS 99002 - 99505 192 ## gi|289705423|ref|ZP_06501819.1| conserved domain protein 91 52 Tu 1 . - CDS 99534 - 100286 550 ## Mlut_22930 putative membrane-bound metal-dependent hydrolase 92 53 Op 1 23/0.000 - CDS 100464 - 101198 548 ## COG1346 Putative effector of murein hydrolase 93 53 Op 2 . - CDS 101195 - 101557 334 ## COG1380 Putative effector of murein hydrolase LrgA 94 53 Op 3 . - CDS 101554 - 102261 536 ## COG1802 Transcriptional regulators 95 54 Tu 1 . + CDS 102260 - 102448 74 ## 96 55 Op 1 . - CDS 102662 - 103906 230 ## COG3177 Uncharacterized conserved protein 97 55 Op 2 . - CDS 103903 - 104097 145 ## Mlut_22990 hypothetical protein 98 56 Tu 1 . + CDS 104361 - 105503 1984 ## PROTEIN SUPPORTED gi|239918760|ref|YP_002958318.1| acetyltransferase, ribosomal protein N-acetylase 99 57 Tu 1 . - CDS 105569 - 106018 359 ## Mlut_23010 hypothetical protein 100 58 Tu 1 . + CDS 105578 - 106429 286 ## Mlut_23020 hypothetical protein 101 59 Tu 1 . + CDS 106720 - 108322 1369 ## COG0578 Glycerol-3-phosphate dehydrogenase Predicted protein(s) >gi|289557843|gb|ADCD01000042.1| GENE 1 2 - 893 779 297 aa, chain - ## HITS:1 COG:Cgl0939 KEGG:ns NR:ns ## COG: Cgl0939 COG1132 # Protein_GI_number: 19552189 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Corynebacterium glutamicum # 16 291 8 283 656 232 44.0 6e-61 MSEHLTDEEILEIQEQGATDDWGGGPARKAKAFWPSAKRLLSLFRTEKLGLAVVAVMVLV AVVLNVWAPRVLGQAMDVIFGGVVSAQMPGGLSREQVIDGLRAQGEDQAAEMLSGMAFTP GEGIDFTELGRLILIVLAMYLVAQLFMWLQGRVLNDLVMRLVFRLREDIEAKINRLPLSY FDRGQRGDLLSRTTNDVDNVQQALQQAFASLVYSALTVIGIVGMMFWLSWQLALIALVAL PVAGVVVGVIGKKSQALFSAQWRETGRLNGHIEESFTGHELVTVFGRQRDMAARSTS >gi|289557843|gb|ADCD01000042.1| GENE 2 890 - 1600 185 236 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 223 16 234 245 75 27 8e-13 MLDDVSFAVAPGTTTAIIGSTGSGKSTLISLLPRLYDATSGEVLVDGVPVTDLARAELTE AVALVPQKPYLFSGTVRENMQFGAPDASDERIWAALETAQAADFVRARTTGKAEAAASGL DSRLSQGGTDVSGGQRQRLSIARALVAEPRVLVFDDSFSALDVTTDARLRAALDRAAAGV TRIVVAQRVATITDADQIIVLDEGRVVGRGTHAELLADNQTYREIVDSQLTAEDVA >gi|289557843|gb|ADCD01000042.1| GENE 3 965 - 5875 2110 1636 aa, chain + ## HITS:1 COG:no KEGG:Mlut_21710 NR:ns ## KEGG: Mlut_21710 # Name: not_defined # Def: heat repeat protein # Organism: M.luteus # Pathway: not_defined # 1435 1636 1 202 202 273 98.0 7e-71 MGAAADHAALVQHDDLVGVGDGGHPLGDDDPGHPGRRAVERRPQPRVGGDVQGGERVVEH EDPRLGHEGTRDGQALALAAGDVRAALGQARVQTGGRRLCLAGGAGAHEVGGLGRLEGRP DALVRGVRGPELHVLPHGAREQVRLLRHEGHGLGQLGPGQVGHRHAVHEHLAGRRVVQPR QQADQRGLAGAGRADDRRRGAGGDGEADVVEHRRLGAGVLEGDVAQLQGAVATRGGHRAG RLAERGDGVQDLADAAGGDHGAREHHHHEGAHHHRHEDLKQVLHERGERADLHEPRVHAL AAEPQDGGGGQVQDHRDDRAEQHEQPADPHGRLRQGGVRVREPARLVALAHERADHADAL DLLAHHAVDVVDVVLHPLEQRHETRDDPRHDHQQHRHGDPHEPGQARVLADGHDDAADRH DRHGHHEVQGHEGEHLDLVDVVGAARDEGRGAEAAELLRGERVHAGVDGAAQVPADAHRG LRAEPHGGDRGDHLHQRDAEHHEADVPDAGGVAAGHALVDDAGVEAGQVQHGQRADQLQH DDGGDGAAIAPPVTAEQGPEHGAPRESGWAHGRVGRREVGRRGPGSLGPSRGRGGRGDQR GTRPDGRTGDVTRGREPDDSAANRTSERQKRLAQRPGPSEQGTQRDQEGLDHAGEAVTVL PARGVDPDGLLGVESEDLLHPGGEVAVHDHHVGLVVVAQGEAVDVGRAHGGPDAVHGGGL RVDHAGLVQQDRDAGLEHLPEEAARGPVRHDVVGVLRHHHLHVHPAPGRVQQRLEDLLVR DEVRRVDEDAVLRPLDGLEVAQPDRVDQQRRLVRGHGDARVPRVRGAPGHLLARAVVRVP LDGDRLVQRPHRRAALAHVGVPPQAGVVVADVEAAGEADLVVHHHDLRVVEPAVPDHASP DRAGEGRQPEHVDARVQLTVEAGRDHEVPEPVVGDVDLHAARGRPVEGVHEPLARGVGLP DEGLELDDPLRSVDRGDHLLVEVLARGEDAQLGARHVGVEHAGVLRRPAHSAPALDHVHP GEPGGDRQGQSHETDARGHGRSPEETPDRQAGQGRQGRSAHSLSLLRAPSARIGRAAHLG PGRAHLGAHAHEFDRRLLQPPGALALGDVLPHPLGLVLRGDVHHDGDRVRHQAGLRPGAS ARVDAQRHMHGPLRGVHQEGLHTHEVAHVDVPHEAHTAAEHRDHGFMAGPAGGADGGRLV HPAQDRARVDGAAHGGLRVGGQEREGAHLLGGLPGRGERQSGHAALDGAAGHGGAAGLFV ALDLAGGRGFPDRHGHAHPVLLRGVDHEGRGGDHGVAVVVADLRQQQAGLDVHLGAVRVD HARLHHGTAVHRHGVPELGVPHVAGTHERPGPARRDGVAGLLDPGDDGAGVHEAGGMVEA VRPEFEGEGSGGSHAVERITRVRALCGRSRPVQESGGNLPAAPQAGPRTGDNGPMTAFDR LPLPAEPQTPHDRLRRRTEAAVAERGEAAVAGLAVRLMTGAATPEDVTSGAARALTGDDD DLSPAATGALALMHAWHRSALPALTGALTAPEADVRSAAHLVLASRAGSLRRDAAVDRAL VDAVRAGCADPDPEVRASAASALGALARPEDLEAALPVLTGMVMDVDADLAAAAELALEQ LAIRLDRPGLRVSLEG >gi|289557843|gb|ADCD01000042.1| GENE 4 5934 - 7097 863 387 aa, chain + ## HITS:1 COG:HI0958 KEGG:ns NR:ns ## COG: HI0958 COG2265 # Protein_GI_number: 16272896 # Func_class: J Translation, ribosomal structure and biogenesis # Function: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase # Organism: Haemophilus influenzae # 3 387 20 389 392 278 40.0 2e-74 MGVPYARQLADKQAAVLAALADAVDADTVVAEPFASAEAGFRNKAKLVVTGTAAAPRLGI LDPRQHPRHHDGAGVDLRDCGLYEAGMEGVFEACAAAVTAAKLEPYDVAARTGELKNVIV TLSPDREAMVRFVLRSADRLDALRAAVPGLLDDLAARGTPAAVVSANLLPEHVALPEGDE EIVLAGGPTLTMRLNGVGLRLRPQGFFQTNTAVTEGLYATAAEWVAEGGVPASAWDLYCG VGGFAFHLARAGVRDVWGMESSAEAVAAARETAAELGLADRVRFSAGDATSALSFEKRRA PEALSFEKRRARPDAVVVNPPRRGIGAELADALEGSGVPTVLYSSCNPATLAQDLARMPR YRVARVQVFDMFPQTRHAEVLTLLTRR >gi|289557843|gb|ADCD01000042.1| GENE 5 7114 - 7704 367 196 aa, chain - ## HITS:1 COG:no KEGG:Mlut_21730 NR:ns ## KEGG: Mlut_21730 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 196 1 196 196 282 76.0 5e-75 MDTKPTRLRKKATREEILASLPVQARVRPARWVFLWVLLVACTALFIWVIFRPPEDVSAG FGVWRGLSFIALPLCLVLLPAATMSVFRPRHVTFDETRVWTRDWSVDWADVKSVGGAGAQ AEHTFQVCLVVGKKLWNEGGLRKANRWDSGRPLQSGGLTNPDPAVRTQAALAPSALTLFE VFDELKKRNRRAGSPR >gi|289557843|gb|ADCD01000042.1| GENE 6 7995 - 11372 3115 1125 aa, chain + ## HITS:1 COG:Rv2006_3 KEGG:ns NR:ns ## COG: Rv2006_3 COG1554 # Protein_GI_number: 15609143 # Func_class: G Carbohydrate transport and metabolism # Function: Trehalose and maltose hydrolases (possible phosphorylases) # Organism: Mycobacterium tuberculosis H37Rv # 282 1122 1 791 795 551 40.0 1e-156 MSQTLTPAAPQDLNARRHRLRRYRAVIFDMDGVITDTAGVHAQAWKELFDGALPAVGALP ANAAVVAADPDVLRPFDAAADYLHHVDGRPREDGVRTFFASRGLHVPEADSPEADAAPEL TVLALAERKQGYFEQVLERDGVRVFPEAQDLLERLRAKGVPVALVTSSKNSRAVLTAGGV LDFFPVIVDGNTAVERGLPGKPDPAMFWEAARELGVDVADAMVLEDAVSGVKAAADGRFG LVIGVDREPELGKGRLKAAGAHLVVQDYGTLHLEDRTTTPFDPAWVLRWDHFDPASEGTR EVLCTLANGYWGTRGTVPGTRISSVHYPGTYMAGVFNRLTSMVQGRVVDTEHMVNIQDWT PLVVTPRHGRPLLPGEENLVEYGQEMDLRRGVLSRTMTFEDAQGRRTTVHTRQFTSLANR HLAALELTVVAENWSGDLTVRSKIEGRVANLNVSDDRTLANQHLEPVQAREIDGETVLLE TATNQSGIHVAVATRTRQVAPVGHHEPIRRPVDGSDLVVGQDILLHVDEGVPLVLEKVAA VATSHDHASASVWESAVKDAQRAQNFRNLLTLHEQRWGTNWDRFSVRIDLAEPYRHHRRS TAAETGGEYAPPVVAAGHSAPVGSAVPMGKDGASLRQQLALNLHTFHVLQTAYGRRRDLD ASVGARGLHGEGYRGHIFWDEIYVYPMLTLRRPEITRGLLMYRYRRLNEARANAQAAGWA GAMYPWQSGADGSEETPTELWNPRSRMWMPDNSHNQRHVSLDIAYSVLRYIEITKDTSFI SDYGAEMLVEISRFFMSMTLHNAVTDRYEIHGVMGPDEFHDGYPEAPGSGLRNNAYTNVL TSWVLAETARLVRWLDTIDDGLPELMEISEEEIERWEEVSARLTVPFFEEGEEAGILAQF EGYQDLLEFDWEAYRAKYGNIGRMDLILQAEGDATNRYKLSKQADTLMLGYLFSAEELDR ILRRMGYELPQEAFERMVTYYEARSTHGSTLSRLVHAWVAARTDPDRSWDLFTEALESDL SDTQGGTTKEGIHLGLMAGTVDTVIRCYAGLETRDDVVRLHPRMPAQLPGARFTIRFRQQ PVVIHMTQREVTVSAGEGMWHDVPMVIAGAEHTLEPGERLTVPLD >gi|289557843|gb|ADCD01000042.1| GENE 7 11483 - 12832 969 449 aa, chain - ## HITS:1 COG:DRA0009 KEGG:ns NR:ns ## COG: DRA0009 COG4585 # Protein_GI_number: 15807681 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Deinococcus radiodurans # 233 431 128 303 336 73 31.0 8e-13 MSTAAPAPARPTTATSRPPADSPLDSRLPAILRAEPVSRHTRIVLYVIVGLMVVGEILTL VLGPMVAAGLSADPELAALLEEDGGLRGEGREPLLRWVLFLASVLVTLLFGWQPTLAAVL VLLGSTFGLVGLVEADHAHLTPQAFTGGVILGAAMVTRYSHRAFVWSALGALILLTVAGE LLTDGTWADEDGLKGVMVVTLILALCVAVPAFMIRRSRHRTRDREAALRRAEEAAACAAE AERQRIAAELHDVVAHGLTVISMQAAMLPTQKDPEKRAAAEKAIEQAARQSLVDLRRMLT ALRGSSRNAQTAEGDAVVDLPARLDEFEARLHAAGFAVERSLTELEELPRSLELTVLRVV QESVTNILKHAPRRGTVRLTSELEGADRLVLCIASPMDEGEPRRDRVVVAMASGFGLAGM RERVAVFGGTLMAGPLGGCWVVRAELPLR >gi|289557843|gb|ADCD01000042.1| GENE 8 12829 - 13494 568 221 aa, chain - ## HITS:1 COG:all4635 KEGG:ns NR:ns ## COG: all4635 COG2197 # Protein_GI_number: 17232127 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Nostoc sp. PCC 7120 # 1 212 1 208 219 157 42.0 1e-38 MIRVVVADDQTLMRTALEHFVAQAEDLEVVGSAEDGVQALEAARTLAPDVVLMDMQMPRM DGVEATARISAEAPGVRVLAITTFSSEQYLVPALRAGAAGYLVKDAPPAEVVDAIRRVHA GDAVFSAPVAADLVEAVTAAPEHAAPCPAEPLAPHERLTERELDVVRELAKGASNAEIAG ALFLAEATVKSHIGKVLDKWQVRDRVQILIRAARAGLVDIG >gi|289557843|gb|ADCD01000042.1| GENE 9 13701 - 13931 71 76 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289705340|ref|ZP_06501736.1| ## NR: gi|289705340|ref|ZP_06501736.1| conserved domain protein [Micrococcus luteus SK58] # 1 76 1 76 76 102 100.0 6e-21 MTAQHAPCPTCSASPAEERPGFLVTLGGVLATVATLMLTSRHTELADVWRMLLAAGVGGV TATALATLQAALRRRG >gi|289557843|gb|ADCD01000042.1| GENE 10 13954 - 16590 1451 878 aa, chain - ## HITS:1 COG:PM1852 KEGG:ns NR:ns ## COG: PM1852 COG1620 # Protein_GI_number: 15603717 # Func_class: C Energy production and conversion # Function: L-lactate permease # Organism: Pasteurella multocida # 398 642 4 248 528 69 23.0 3e-11 MRLGAGPQVDALEVAGGRGGGAQPLRQDVDLGVRGGGVRVLRHERGGQRPRPPPRVGAGQ GGAGPAVVGGEACPGRTRRDGGPVRRRGACLRGEEKRGAGRDGVRAGGQQGAHVLDGAHA ARGHHGHGARGPRPDDVPHRRQHRRQLGAGRLRGRVRRAPVPAGAVALHHEERGAVLEGG PGLGRVRHGGPGRDARGGQPGEHVRGRQAEREGDQRPRLLLGGGEQGVEVDPFGVRVRDH VRGGGQVGGAVGRQVRPVRGDRRRPRCPCRLRACGGGDRRVHRVRDEQVHAPAVRPLRAQ QRAQRVHLLAHLRGRPHAAGEEPAAAGAHDGGHQLRGRGAAGHRGHRHGHGRDQTGAGDV VVGWLRHDPQRRGEGPAPPRAYSGAGYTRRGRCGVEVLLALSPILLTLVLLLTRLPAWVA PAAGTAVAVLLALTAFGVAPGDLGGAIGAGVPTLLEILAIIAGGITLSRVMEYSGGHARL AAWLSAGNGPTIATALLMVHGVIPFLETVTGFGVSLIVGVPLLLGLGYTAFRSALISILA LTIGPWGSMAPGTLMGARLFGLDFREIGVTAAVFNLPACLVAGVATVLLLRGARGMRVDA GAARTLPWLGVAVLSGVAQWALILGANLVVGTAPAGAVATFVLTVAWLLVIRGGRLLPGP GRDVVPYLTLMAGTVLGTTVKGAFGLEGTAALVGTPALWAFVAVGVGVWLLPLDAAARRR VPREAGKLWVGTAIPNALYVAFGLILSAGGVSQALAGALSGMGESYLVAMPFLGAFAGFI TASNTGAMALIGPLQMDTGAALGVPPPWSNGLHNAAAGWGIVAGPARIQVAHGMAAGAQS PQMPGWTVTRRNLFVVLLPAMLAGILGMAVMGWFLLPR >gi|289557843|gb|ADCD01000042.1| GENE 11 16767 - 18116 1032 449 aa, chain + ## HITS:1 COG:no KEGG:Mlut_21890 NR:ns ## KEGG: Mlut_21890 # Name: not_defined # Def: histidine kinase # Organism: M.luteus # Pathway: not_defined # 1 449 21 473 473 447 68.0 1e-124 MAAAALFTVLVALPWIALGPMVAPDPQGRQTAVSLLAGAGMVLPWAVRRVRPVASAAVVT AAAVLHLLAGPEFSLSLLMVPLTVYNLAANAPRSISVAGLLTGLVGGVANGVKVWLFPAQ FVTPDGLIVRSPAEPLAMVIMAIGCGLMVLTAWAFGDVVRNRRLAVRALEDRAHRLEVQS RQERELAAADERSHIAREMHDIVAHSLQVIISQADGARYAAAAKPALAVTALETIGQTGR SALADMRQLLGVLRETGETVAGVPGVTDDDARRPAADVVPARPADPAPDRADPAGTRPDV VAAPDGRGARLPPGRRPQPRLADLPALVETMRLSGLEVSLLETGTPRRALPAGGELAAYR IVQEALTNTLRHGGPDADAFVTLAWTARGLDLQIDDDGCGAAADPATRGSGQGLRGAAER AALFGGTLETGPRVGAGYRVSAHLPYSAV >gi|289557843|gb|ADCD01000042.1| GENE 12 18173 - 18865 652 230 aa, chain + ## HITS:1 COG:all4635 KEGG:ns NR:ns ## COG: all4635 COG2197 # Protein_GI_number: 17232127 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Nostoc sp. PCC 7120 # 9 223 2 209 219 166 45.0 3e-41 MSSDETVPVRVALVDDQALIRSGLAMLVDSQPDLTVVAEAGSGREAVASVSVAGADVVLM DVRMPEMDGIEATRALLRRPDAPRVVVLTTFDLDEYAFDAIEAGASGFLLKDAPPEELLA AIRTVHRGDAVIAPSTTRRLLTHMAPRLRSDQVRSAECEEQQAAVASLTPREREVLVLMA QGAANLEIAAELVLSEATVKTHVGRVLAKLGARDRVQAVLIAHRAGLVQF >gi|289557843|gb|ADCD01000042.1| GENE 13 19224 - 19490 265 88 aa, chain + ## HITS:1 COG:no KEGG:Mlut_21910 NR:ns ## KEGG: Mlut_21910 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 88 1 88 88 124 93.0 9e-28 MTGSILDHPTPTTSRASDPAAERAQRDSECVAFFVALVTAAVAMLGLSLFTGVEGLLRLA LTAGAGLLAGAVSWATARPALEDDAPGD >gi|289557843|gb|ADCD01000042.1| GENE 14 19504 - 20997 571 497 aa, chain - ## HITS:1 COG:AGpA729 KEGG:ns NR:ns ## COG: AGpA729 COG1309 # Protein_GI_number: 16119724 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 297 363 21 87 210 64 47.0 4e-10 MAVRDQHDAVGGGGGHGVVGHHDDGLAHLPRGPAQQAEHLGGGGGVQVAGGLIPEHDVRS GEQGAGDGDTLLLTARELVRAVAQPVREAQCPGDLLQPRAVRGAAGQLEGQHDVLLGRER GHEVEGLEHEAHAVAAQAGQGGVVQPGDLGAADPHGARGRRVQPGQAVHERRLARARGPH DRGERARGEVHVHPAQGVHLRVTAPVGAGEAAGADGGRRRRGGGRRRRARPRRDGAGGRG RGGVRGAWGVHGTHSSARTRRGGSEEGTTSAGGGSCPGMRRAGEAWTRGRQVPAAGRCRA EWDDGDMRAHARANRQDLLAAAGRLIATQGAAMSLRGVAQEAGVGVGTLYRHFPTRRDLL DAVLEDVVARTGGILQAFLDGAAGDEHGGGAEARWRRLAEDLGAVNLASLAAARDDFDPA DRPPEALIAEAERVILELADQVVAEARRAGLVGPDVTGADYLFGLLMVTRSPECELLGHG PGQRGWLLDTYLRGLRP >gi|289557843|gb|ADCD01000042.1| GENE 15 20245 - 21087 615 280 aa, chain + ## HITS:1 COG:Cgl2501 KEGG:ns NR:ns ## COG: Cgl2501 COG1136 # Protein_GI_number: 19553751 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, ATPase component # Organism: Corynebacterium glutamicum # 31 271 40 280 284 276 58.0 2e-74 MDTPRTSHPASPPTPGPVAPGPGTPSSSATTTTAPAVCARGLTRAYGRGDAQVHALRGVD VDFASGAFTAIMGPSGSGKSTLMHCLAGLDAPTSGSVRIGGTEITGLDDTALTRLRRDRV GFVFQAFNLVPTLTAEQNIVLPLELAGRTPDRAWLEEITRALGLADRLGHRPHELSGGQQ QRVAVARALLTRPDVVFGDEPTGNLDTATSAEVLGLLRRSAREMGQTVIMVTHDPVAASA ADRVVLIADGHLAGELVDPTVESVTAALTALSAPAEGGVR >gi|289557843|gb|ADCD01000042.1| GENE 16 21090 - 23624 1922 844 aa, chain + ## HITS:1 COG:Cgl2500 KEGG:ns NR:ns ## COG: Cgl2500 COG0577 # Protein_GI_number: 19553750 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Corynebacterium glutamicum # 1 838 7 848 853 206 27.0 1e-52 MWTVALSQLRTQPRRYVSLVLAILIGTLFLAASFLVSSTAQATLRATLGSTYAGADLVVL PGGSEDVSDLAGTGAEPGPLARLDGVEEAYALRMAWAAARAADAEFGAAVMPLPRDPALA GLTVTAGALPAADDARGVTLDAQTAGRHGVAVGDVVTLASESGPAPTTTPVDAVVTGLTE PSPDPMLSGQAQVWASPAALTAVQGEDGEAGFTPHLLLRLADGADVPAVAEAARAEATAA GVDVDVATPDEAVRSAVTQLSGGTDLLGWVLGGFAALALLVTALVIANTFQVLVAQRTRD LALLRTIGSTTAQVRASVLTEAAVVGVVGSVLGAGLAVAIVAGVAAAARAMLDLPFLTFG LHPAGLAVSVAVGVAVTVLAALAPAVAATRVAPLEALRPRDEVTAGSRGGRVRTAIGLML ALGGTALMLWGVSTREPVSAIGGGALSFVGVLLLARLFVPAAVRGAAVLARPAGVPGRLA GLNAVRHRSRTAATAAALLVGTTLVALFLTGGRTAQEQTALALDTAYPVDIVVQLPADAD PAHAAEAVAATADVQAVALATPVGATENGSPVLATPAADLRAVVARLPEGVTGLGDPGTA LVPDWVDADQVRAEVAGAERTFVPVRAGSLSSGVYVAAEPLREAGWDGAAGAAVPGQLLV ALDPGVPVDRLQGLSEDVTRAAGAGAAVIDGGAGERALYARIIDAMLGIVVALLAVSVLI ALIGVANTLSLSVIERTRENALLRALGLTRGGLRGAIAIEAVLIAVVAAVLGCALGVCYG WAGAQLVLADLSATAGAGTAVRPAVPWLELVLVVAVAALAGLAASLLPARRAARLSPVAG LAAV >gi|289557843|gb|ADCD01000042.1| GENE 17 23762 - 24772 837 336 aa, chain - ## HITS:1 COG:Cgl1229 KEGG:ns NR:ns ## COG: Cgl1229 COG0385 # Protein_GI_number: 19552479 # Func_class: R General function prediction only # Function: Predicted Na+-dependent transporter # Organism: Corynebacterium glutamicum # 13 332 11 330 335 308 61.0 7e-84 MTAPDPAPTDARRAEDRSARIAVTVFPLLVLAAALVGFLAPTAAKTLLPQVNLFLGIIMF GMGLTLTLPDFGLVARRPLPVLLGVVAQYAIMPLLGLGVAVVLQLPPELAAGVILVGSTP GGTSSNVVSYLARADTALSVAMTSVSTLLAPLLTPLLTLWLAGQYMAVDGGAMAKSIVNI VLLPVLGGLVVRLLLRRVVDRVLPALPWVSVVFIALVVAAVVGNSASRVLSAGLLVFAAV VLHNGLGYLLGYGAAKLFRLPTPVARTVSIEVGMQNSGLAAGLAAQYISPAAALPGAVFS IWHNLSGAVLAMAYRRSDGRRAAGVPGSAPANRLRN >gi|289557843|gb|ADCD01000042.1| GENE 18 24891 - 25886 779 331 aa, chain - ## HITS:1 COG:no KEGG:Mlut_21980 NR:ns ## KEGG: Mlut_21980 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 330 1 330 331 565 99.0 1e-160 MRVPGPFPAHLQDAPFTRAQALAAGVSGSRLRSRDVERVTHGHYRWIGPVTGATPPARPL ATELSRLQDLAAMRPDVVVTGESVARLLGWPLPDDVKARVRPTVLRSRTRRVLREPGVRT RLVDLDRVIVRRDRLHGLRWTSHADTWFHLATVLDRDALVAVGDRLAREDERRGKVALAT RRELGAALERHTGEAGIVRAREALALVRTGSDSPAETELRLALMAAGLPEPDLQIELWDP DYSLWHPASADLGYRRWRIAIHYEGKTHDGAAQVGKDTRRDAVFLRQGWLNIRVAGTDRW RGFVETAALVRAAIAERGGLDAGGAEDRLRN >gi|289557843|gb|ADCD01000042.1| GENE 19 26064 - 27926 197 620 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 382 588 16 226 245 80 31 3e-14 MTSLLRILRFAPQLHRLYLGIAVSSVLAAVLALATPFLIGAATDRIVAAVAGETGVAEAV TAVTWLAVAFLAVEVATTLVASVGGYWGDVMAARMRAILSTRYFEQLLHLPQRYFDTAIT GQVVNRLNRTINELTQFLQFFANNAFTMLITTAAVLVIMAFYWWPLAILLAVVFPVYMWL TARTSAKWQVWEGEKNTEVDIASGRFAEVVSQMSVVRAYNRQEQELTGFRDRFLRTVGIT RQQSRFWHGMDAGRRLALNVAFGAMYLIVFVRTAQGLFSVGDMVILLQLMNMARQPIFSM SFLVDSAQRAVAGSKDYFEVLAEERERAGGAALAVASADAPRVPAEPRADVVPGAPDVPA DVPAVRFDEVSFAYDADASRPVLDRVSFDIPRGARVALVGESGGGKSTIAHLLLGLYPVT SGRIEVFGQDVAGLDLAALRGRIATVFQEPSLFSGTVRENIAYADADASDERVRAAAQAA YAHRFVAAFDDGYDQVIGERGLRLSGGQKQRIAVARAVLKDAPILVLDEATSALDTKSER LVQAALEDLMVGRSSLIVAHRLSTIASVDRIVTLRGGQVQEIGTPAELAASGGIYAQLLE LQRAGTQEARKMLKEYGLSG >gi|289557843|gb|ADCD01000042.1| GENE 20 27985 - 28455 387 156 aa, chain - ## HITS:1 COG:CC1346 KEGG:ns NR:ns ## COG: CC1346 COG0494 # Protein_GI_number: 16125595 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Caulobacter vibrioides # 19 151 4 131 131 65 42.0 3e-11 MSPSPSDSARTPTVAAGEVIRVSAVVLARPDRRVLTVRKAGTAMFMFPGGKHLPGEDPVD TAVREVAEETGLRLRPDELTRLGAWDTAAANEPGAALHSEVFALWRPVARHEVPEPTDEI VELHWMDPAAPAAPGGHGVAPLLHPVLAAVAAAPPF >gi|289557843|gb|ADCD01000042.1| GENE 21 28481 - 30313 1238 610 aa, chain - ## HITS:1 COG:Cgl1233 KEGG:ns NR:ns ## COG: Cgl1233 COG1279 # Protein_GI_number: 19552483 # Func_class: R General function prediction only # Function: Lysine efflux permease # Organism: Corynebacterium glutamicum # 337 607 6 234 236 99 29.0 1e-20 MRPSVRGVPRRGRGAQHRVREAVQSRGPGRPALPVQVHVGRAEGRDRLEVGVPALEHARR DLHRGEHAPAQPELHRPQIRVHGGHEVGRRVGHGPAAGDAAQHRVLQAVAGAVVHDRQRA EVDPAPRVAVQLQQEGRAHRVIAHRAQRGGGAPGHGRGVVRHGRHDRAVPQQDGGVLLVL GLHLQDDVVPRRRLAQHGLPPRVEGVRVEGHAQRHAAAVAPAERGERLVLEREGLPGETE HALSGRGRPDGNGAGQEHLAHLPLQGLDPLREGRAGDPQGVRGGVEGAVVDGRDEGAQVV GVHAVQARGGHEGCLQILKKIAMARTWDGSYPRSVTIFATGFLTYLALIVAIGAQTLFLL RQIVRRDRVWTVLTVCFVADVALLVLGAGGVGVVAERWPWLVPALTVAGVVYLLGFAAGA LRSAWRGDRTLTTAAADVEGTGHGPDRIDLAVLTGELPLIDPATGRLAEREPAGAGVGQH DDGAPGFGAPSGGGSVTVRQRVQPRRVALDRPQTPLPRIILLALSVSLVNPHAILDTVVM MGTFAQTFGAAKWAYVGGAVAASLVWFTALGWGGTKLAPSMDSARTWRIVDAVVGVLMLG IAVKVGLTLL >gi|289557843|gb|ADCD01000042.1| GENE 22 30399 - 30782 380 127 aa, chain - ## HITS:1 COG:no KEGG:Mlut_22030 NR:ns ## KEGG: Mlut_22030 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 127 1 141 141 113 85.0 2e-24 MTDVRRTATALTLAAAVVTGLGAPAAVAQTTAPATEAATTAPASESPAPQEEKDDNGNWG LWGLAGLLGLAGLAGRRKREVHAEPVRRDHHVAGAHRDHDVHRVDDRAGDVRTEGDATRR PGTGDVR >gi|289557843|gb|ADCD01000042.1| GENE 23 30923 - 32614 1110 563 aa, chain - ## HITS:1 COG:MT3871 KEGG:ns NR:ns ## COG: MT3871 COG0642 # Protein_GI_number: 15843384 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Mycobacterium tuberculosis CDC1551 # 88 540 85 494 506 167 33.0 4e-41 MSSGPPETATVPSGHGSTRRRRPTSLARRIGAGVLLILMATILAYSFYAAGITKALLAES ASRDASEAWIRAAEQLTAPSPGGGGDGGPGRGDLRVPGTLGQPEGTVVALVPLSGLEEHQ QDALIGHRVGDAGESVPLTAREANDLLHALRDRPGGPMLDAVLGDVSYRVQAQTLTTPGP WVAADQVLVVGAPTGAMSDVARQALLAVAVGLSVTVLTTAILVTLWLRRGLAPLREVAAV AERVAQVDMARAGLDPEDSRMPPRLLQGPDEVAVVAQALERFTGSVEAALEQRRMQEQQM RRFMADASHELRTPLASVRGYAEMIAMTEELSATGRRSLGRVLFQADRMAALVDDMLLLE RLESVSRGRAMGLEPSEEVALAERVDLSEVVLEGVMDARAAWPDHTWVVDLPEGVEPGTQ RSVTGDRSQLARVVGNLLSNAAKHTPVGTTVTASVRQDQPRPGFMLVSVHDDGGGIPADR HATLFHRFVRAPGKGRTNAPGTEPSTGLGLAIVRSIARSHGGDVTVASEGGWTRFDVVVP CTPGRAGPGAAGSCCGSARAGRP >gi|289557843|gb|ADCD01000042.1| GENE 24 32595 - 33323 681 242 aa, chain - ## HITS:1 COG:MT3872 KEGG:ns NR:ns ## COG: MT3872 COG0745 # Protein_GI_number: 15843385 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Mycobacterium tuberculosis CDC1551 # 11 242 53 285 286 264 58.0 1e-70 MAELKKVLPELSHPDGAPVRVLVVDDEPMIADLLSMGFTLCGWEVIVAHDGATAVELGAA GRPDLAILDVMLPDMDGLDVLERLRAHWSEMPAMFLTAKDATEDRVAGLAAGGDDYVTKP FSMEEVLIRAHRLVQRSGVVSGGSEVLVVGDLVMNTRTHEVTRGGDEIELTATQYNLLKF LMANVRTVLSKERILQDVWGYDFGGRANIVELYISYLRKKIDADRDPMIHTVRGAGYVIR PA >gi|289557843|gb|ADCD01000042.1| GENE 25 33658 - 34323 320 221 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163754278|ref|ZP_02161401.1| 30S ribosomal protein S15 [Kordia algicida OT-1] # 1 218 1 221 221 127 33 2e-28 MFDAIAGRYDLMNAVMTWGQEPRLVRRTVARANIPAQARVLDLATGTGDLAFEVLKQHPD AQVVGADIAAEMMEVGRARAGGDRIEWVVADATDLPFAADSFDSVTHGYLLRNVADIPAT LAEQFRVLRPGGWVAALETSPAPDNVLKPFSSFYIHRVMPQLAKLIADRPEAYAYLSSST KAFHTPDEVADLFAEAGFVNIGHETHMFGTLATHWAMKPVD >gi|289557843|gb|ADCD01000042.1| GENE 26 34605 - 35681 959 358 aa, chain + ## HITS:1 COG:Cgl0649 KEGG:ns NR:ns ## COG: Cgl0649 COG0614 # Protein_GI_number: 19551899 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-hydroxamate transport system, periplasmic component # Organism: Corynebacterium glutamicum # 19 354 15 350 350 179 39.0 8e-45 MASSSLSRRSLLAGGGVGLTLLLAACSTGPAGGSASSSSAGASSSDAAGGDAAFPRSIEH VYGTTEIPQRPTRVATVSWVNQDVALALGVVPVGMAAVEFGGNAEKSTDWFDAKLAETEG AQKPVQWSEASGIDAEAIAAVKPDVILAVYSGITQEDYDRLSKIAPTVAYPKDVPAYGTS WQQSTEVIGRVLGTEQEAGELIADLEQQIKAAGEKHADLQGASFVYGTIDPAAADQISIY TDVDNRPKFLELLGMEQAPVVTENSPEDQAFFFTWSPERADELESDVFVSWAAQDSVREA IESDPLLGSIPAVKAGALVLQTDEQEVLSVSAISPLSIPFALEKVVPPIAEAAKTAQG >gi|289557843|gb|ADCD01000042.1| GENE 27 35691 - 36746 775 351 aa, chain + ## HITS:1 COG:SP1033 KEGG:ns NR:ns ## COG: SP1033 COG0609 # Protein_GI_number: 15900904 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-siderophore transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 68 341 61 328 339 157 34.0 2e-38 MPSTALASPARVRAGVLMGALPAALLLAALVAGVALGARTVPATTALDTLGAVLTGHPVP EGIEAAAVASRVPRVVTGALVGAALAVAGAALQGATRNPLGDPGLLGLSAGAGLAVAAGM ALGVAGSTFGVLALAAVGTLIAAALGYAVAAAATRRGRTPGAPSPMALVLAGAAITAGAT AGTTALLVLSPTVQDRLRFWAVGTVARADLGEALALAPVIAVGLLAAVAVAPGLDALALG DDLAHGLGGRPERVRAVLLGAVVLLTATAVALAGPVGFVGLLVPHALRRLRPPSTRALMV GCALWGAVLVILADLAGRLVVAPGEIHLGVTTVLLGVPVLLALLRRPGVAA >gi|289557843|gb|ADCD01000042.1| GENE 28 36743 - 37813 897 356 aa, chain + ## HITS:1 COG:SP1034 KEGG:ns NR:ns ## COG: SP1034 COG0609 # Protein_GI_number: 15900905 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-siderophore transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 34 348 26 332 335 139 30.0 7e-33 MSLQRTAAADVVARLRRSDRRRLGRACAGLAVAVLVLALLRVVWGTYQVTVPDLVRILGG ETIPGASFIVLEEKLPRAMAAVLTGAALGAAGALYRRTLRNPLASPDILGVTQGAAAAVV LGMLAAAGQTGGGSDLTRAATALVGGLAAVVAVFATARSVGGERFVVAGIAVAAAGQAVV AGAMLSLAQHDLQSATVWIAGSLNGVTWGRIALLACVLVVALPLAGVLHARLAPADVGPD LAHALGARPRPTSAAALGLGAVLAAVATAVVGPLAFVALLATPVARGLTRGLPSLPAAAL TGAALVLLADLVAGEAVPLLTGAALPTGVLTGAAGAPLMLWLLLRQGRTPGGVRST >gi|289557843|gb|ADCD01000042.1| GENE 29 37810 - 38679 598 289 aa, chain + ## HITS:1 COG:SMa1741 KEGG:ns NR:ns ## COG: SMa1741 COG1120 # Protein_GI_number: 16263412 # Func_class: P Inorganic ion transport and metabolism; H Coenzyme transport and metabolism # Function: ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components # Organism: Sinorhizobium meliloti # 28 284 10 260 280 250 53.0 3e-66 MTAPPLTVPSPAAPRAGAADDVAIRLRGLTLGYGPASAPPIVQGLDLDVPAGRVTAIIGA NGCGKSTLLRGLTRQLAPRTGSIEVLGRDAARVSARDYARTVALLPQHPVAPEGMTVAQL VARGRHPHRGLLGGRAAGDDAAIASALERTDLVELAEREAGTLSGGQRQRAWLALVLAQQ TPVVLLDEPTSYLDLSHQVEVLDLVRALPDPRGGGRATVVAVLHELNLAARSADHIVAMA AGRVVAQGTPGEVIVPEVLTEVFGLDADVVADPLLGHPVVLPRGNGDRR >gi|289557843|gb|ADCD01000042.1| GENE 30 38676 - 39731 759 351 aa, chain + ## HITS:1 COG:Cgl0645 KEGG:ns NR:ns ## COG: Cgl0645 COG2375 # Protein_GI_number: 19551895 # Func_class: P Inorganic ion transport and metabolism # Function: Siderophore-interacting protein # Organism: Corynebacterium glutamicum # 13 347 9 294 299 77 27.0 5e-14 MSADGMIVAHTRVVSVEQPCRGFRRIVLAGPDLEAASGDLLGLLPPGVADLHALYRGARP RRDAYVKLLIPPPGGTSADPDLSAGFRAGFLAIPEEERGWMRTYTVRSAGLVRLDGRQVP SLTVDVVLHGDPDDPADPHQGPGLRWARAVQAGDAVNVLVPSAEAPAWSGWRQTGAHRVL AVGDETAVPALVSVAEELADPFGGFDGEADLVLELPHDGQAADLIAERLAVPEPWDWRAV TELADRGRVRLHVGRRAPGAPSGSWAHARLAALLGVDPDDAGGPVAPPAASVEREWTVAA LEADERPEAYVFLAGESAMVRALRRLSVGPGGVPKKHVSFMGYWREGQAES >gi|289557843|gb|ADCD01000042.1| GENE 31 39833 - 40498 670 221 aa, chain + ## HITS:1 COG:Cgl1506 KEGG:ns NR:ns ## COG: Cgl1506 COG0702 # Protein_GI_number: 19552756 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Predicted nucleoside-diphosphate-sugar epimerases # Organism: Corynebacterium glutamicum # 2 215 8 221 224 133 43.0 3e-31 MTRTVIIGGHGKVALLAAPLLAEAGHDVVSLIRNPDHAEDVRAAGAEPLVLDIEKADQEE LLHALRDADNVVFSAGAGGGDAQRTRAVDHDAAVASMRAAEAAGVRRYVMVSYLGASLHH DVPEDDPFYTYAQAKAEADEALRDSGLAWTILGPGALTAEEASGRITVDPDLSDSDASQR EASRGNVARAIVAVLNEPGTVGRKIDFVDGDVPVAEAVRGD >gi|289557843|gb|ADCD01000042.1| GENE 32 40642 - 41421 677 259 aa, chain - ## HITS:1 COG:no KEGG:Mlut_22140 NR:ns ## KEGG: Mlut_22140 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 259 1 259 259 453 97.0 1e-126 MPLSTLRVSLPSLRRTRPAPQGVRGRIAHAVVSRLRPRPVPPVDRRTRLAWQVSGALPLI GCLTSFPIGMSKDSMVIPGVGYQGGFPAGWSHALNQPAYFTWLSNALVAGTSLTLAARRE APTSDTFWAVRTAGLGSVMVTGIVYNAVLRGREQDTVLYRFNDALQHIVNPVLAPAVWAL FDPRGQITPRRAGLASVIPLMWAAVTMARGPRIDWYPYPFLDVPRLGRRSVGVVLAGILA GFTGLMGVLGTVDRRLGLA >gi|289557843|gb|ADCD01000042.1| GENE 33 41546 - 42916 1190 456 aa, chain - ## HITS:1 COG:Cgl2430 KEGG:ns NR:ns ## COG: Cgl2430 COG2066 # Protein_GI_number: 19553680 # Func_class: E Amino acid transport and metabolism # Function: Glutaminase # Organism: Corynebacterium glutamicum # 4 349 5 349 413 355 52.0 2e-97 MRHPIPDYLASLVTELGAVNPGETAQYIPVLAEADPDRFGIALATPTGRLHCAGDADVEF TIQSASKPFTYAAALVDRGFAAVDRQVGLNPSGEAFNELSLEAESHRPDNAMINAGALAV HQLLVGPEASRKERLDRAVEIMSLLAGRRLSVDWETYESEMAVSDRNLSLAHMLRSYGVL QDSAEEIVAGYVAQCAVLVTAKDLAVMGACLATGGIHPMTGERMLPSIVARRVVSVMTSS GMYDAAGQWLADVGIPAKSGVAGGVLGALPGRVGIGVFSPRLDEVGNSARGVLACRRLSE DFRLHLMDGDSLGGTAVRFVEREGDRVFLHLQGVIRFGGAEAVLDALTDLRTGAEKPGTG WDAAVYPRWQEAAADRAALSAATGGGAVHEAAAAAARDENDGPIRTVVLNLARVDRIDDV GRRLIAEGVRRLQADGVRVEVEDPERILPLEEAGAH >gi|289557843|gb|ADCD01000042.1| GENE 34 42918 - 43580 570 220 aa, chain - ## HITS:1 COG:Cgl1490 KEGG:ns NR:ns ## COG: Cgl1490 COG0454 # Protein_GI_number: 19552740 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Corynebacterium glutamicum # 34 206 19 183 203 73 33.0 3e-13 MTSPDPAPPRPRVHVLTLRPDGAREDTARRVGAVLAEAFATDPYTLGLVPEDRRGPRLER KFTAAVRHGLRAGADGAPLGAVDVAVDADDGTLLGAAVWTSPAAPRGVDVPGLLAGLPTA VAVHGRHTLALKRIQAACERARPAGRHWYLEEVGTVPSARGRGAASALVRHGQRRASGLP VHLEASVPATVPFYEQLGFRATGHVPVPGGEPLTCLRWEA >gi|289557843|gb|ADCD01000042.1| GENE 35 43667 - 45127 1155 486 aa, chain + ## HITS:1 COG:MT1296 KEGG:ns NR:ns ## COG: MT1296 COG0277 # Protein_GI_number: 15840703 # Func_class: C Energy production and conversion # Function: FAD/FMN-containing dehydrogenases # Organism: Mycobacterium tuberculosis CDC1551 # 22 481 4 452 455 266 44.0 8e-71 MDFSAPLAPAAPAPAADAPPADVVARLQAELPGRVDVSVAALEAARADRSGHRSPAAPRA VVRARTVEDVQAACRIAHGTRTPLVTRGAGTGLAGGAVAGAGEIVLDMTAMDRILEVSPA DRVAVVEPGILNGALNAALAEHGLWWAPDPASKDISTVGGNIAMNAGGLLCAKYGVTREA VLGLDVVLADGTLLRLGHRTVKGVTGYDLVALMIGSEGTLGVIVGATLALRPAVRGVPVT LGGFFPDVVAGAAAAEAITGAGHVPALMELMDEATLAAVRAHAGPERGAALPESGAFLLV QADGAGAEADGEAMAALMRAHGGDVTVTVDPAEGEALMALRRTAFPALERLGTPLVEDVA VPRSRMAEMFARIREIEARTGVAIPTTAHAGDGNLHPILLFGAAAQVGGAAEDAASIPAD VWEAAGELFRAGLELGGTLTGEHGVGLLKRAFLRDELGDAQHDLQQRIKAVFDPHGILNP GKVFTP >gi|289557843|gb|ADCD01000042.1| GENE 36 45124 - 45579 275 151 aa, chain + ## HITS:1 COG:Ta0797m KEGG:ns NR:ns ## COG: Ta0797m COG0824 # Protein_GI_number: 16082557 # Func_class: R General function prediction only # Function: Predicted thioesterase # Organism: Thermoplasma acidophilum # 21 136 9 122 134 68 33.0 3e-12 MTQPTTPETPADAGTPTPFEVGLQLRWSDEDRYGHVNNARLLTLAEEARVRALAAWATTT ASPDVQRVVRSMEVQYEAPVVYAGPEVTARVWILRIGRTSFTLRHELWQDGRRCVLCDAV FVQVDPAAGRPVAVSDEERAVFERVLIPAED >gi|289557843|gb|ADCD01000042.1| GENE 37 45645 - 46487 804 280 aa, chain + ## HITS:1 COG:BH1885 KEGG:ns NR:ns ## COG: BH1885 COG2357 # Protein_GI_number: 15614448 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 38 250 11 224 251 200 46.0 2e-51 MEQDPSPDAPVPSADVEALRGTPVSELTQLSPVMSVALDRLRKDVERFDLEYRSALLQVE ARLEVLRDEFTHLHDYNPIEHIVTRVKSPESILRKASARGLSLDLDALRTNVTDIAGARV IVSFARDVYRVFRQFTQQPDIRVLEVEDYISRPKPSGYRSLHCLVQVPIHLSTGTIPVTV EMQFRTSAMDFWATLEHKINYKFDGGVPPDIATELVAAARVAADLDTRMERLHDQVQETD RDDDAAAAWEDDGGPAFEDEPAAGPGDAEPGDDAPGASTG >gi|289557843|gb|ADCD01000042.1| GENE 38 46637 - 47479 493 280 aa, chain + ## HITS:1 COG:MT1538 KEGG:ns NR:ns ## COG: MT1538 COG0398 # Protein_GI_number: 15840954 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Mycobacterium tuberculosis CDC1551 # 55 248 56 250 252 82 33.0 8e-16 MPSTAVPPGDSGAASTLPARTGHRGVSILRTAALVLVVAAFVWLALTVRLPGVDELRARL DGFGWWSWLAFTVLYAAVALTPIPVTIMAVTAGVLFGTIEGTVLSVVGALLGSLGAYGVA RAVGREVVLRWLGRHAETVERRLEDTGFLALLTLRVAPGLPYWPVNYGAGALAVPLGIFA GSTAVGVIPGQLSLVAMGAFAVRPGVVNGVLLGVGWLTVGGLTLWAVRHWRRATRSAEGP DVSRRRGAPDRRSGPGRRRRGRSGRTTSATWRRRRASPPR >gi|289557843|gb|ADCD01000042.1| GENE 39 47361 - 47744 300 127 aa, chain - ## HITS:1 COG:Cgl2569 KEGG:ns NR:ns ## COG: Cgl2569 COG5646 # Protein_GI_number: 19553819 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Corynebacterium glutamicum # 4 127 26 153 153 89 41.0 1e-18 MAERAEELRAQRGGRKRADALQDLLAKIEEMPEPDRALAVAVHRIVTEVAPELAPRTWYG MPAYARGTGVLVFLQVSSKFGVRYTTLGFNEGAKLDDGAMWPTSFALTALDDDVRARIAD LVRRAVG >gi|289557843|gb|ADCD01000042.1| GENE 40 47819 - 48373 575 184 aa, chain - ## HITS:1 COG:no KEGG:Mlut_22230 NR:ns ## KEGG: Mlut_22230 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 174 1 174 184 312 95.0 3e-84 MSIPATEVEARWNAAAEPFTAVVGDVHDWDAATPCEGWDALDLLDHVIAGQRDFAARQGR EVPLFDGSRQQLATQWAKHAAAMSALAGDEEFIMRPMKTALGEMTVGEALIRFHAFDLIV HRWDLARSQGVDARFTDAEIDCVEESLELFGDAAYTPGILGEPVPVADDADRQTRLLGRL GRRG >gi|289557843|gb|ADCD01000042.1| GENE 41 48384 - 49640 921 418 aa, chain - ## HITS:1 COG:no KEGG:Mlut_22240 NR:ns ## KEGG: Mlut_22240 # Name: not_defined # Def: polysaccharide deacetylase # Organism: M.luteus # Pathway: not_defined # 163 418 1 256 256 451 95.0 1e-125 MPPPVPQPTRRQMLLAGSALLGSGLLTACGQDGEDAPSPSSSEPASSAPTSAAPAGPPPA GEPVAWPDVARVPHLFFHSLVVDPARAFDGDDKAGGYLDFMVTVDEFDAVIRQVYERGYV LVSPHELYEVGEDDVVRPKTLMVPEGRTPLILSLDDCSYYLYMDGDGFADRLIVAEDGRV RNEYTDAEGTTHVGAFDVVPRLDDFLAKHPDFSLNGARGVLAMTGYDGLFGYRTSAREFG DSPTFDADVAAATEVADALKDSGWEFASHTWGHRTVPKLAMEELEFDMGHWHEEVEPILG PTDMLIYPFGADVTGPGKYTEDNERYRYFRELGYRSFFLVDGTSKAWGQLEPGYYRGSRI NVDGISLAAAVSGERPVLEEFFDPRSVLDPARPESIRGPKEPSTAPSSSAAAPRTPRP >gi|289557843|gb|ADCD01000042.1| GENE 42 48765 - 50648 448 627 aa, chain + ## HITS:1 COG:no KEGG:Mlut_22270 NR:ns ## KEGG: Mlut_22270 # Name: not_defined # Def: conserved hypothetical protein TIGR02246 # Organism: M.luteus # Pathway: not_defined # 452 627 1 176 176 252 97.0 4e-65 MPVPHVELELLHSQLRHRPVAPRVGGELPAAVLERVGDLGGGRDVGVERGAVPELAGRGA VAEQAVVAGHGQHAAGAVEAEVRVLGEEVVQARDDVERPDVRGALGVRVLVADAAVLGHD QAVREAVAVHVEVVRAVVQGEDQRGAALGDHEGLRADDVVLAHLVQLVRGDQHVAALVDL PDDGVELVHRDHEVQVAAGLVVAVEGAGRVHHQGVEEQVRHPGHVRPGHRFAGGWRTSGG SGGGRGRGGLGRRRRRRVLPVLPAGGQQSRSEQGGTGQEHLSAGRLRHGRGHRAPFSGGT HHPKAARPETTPAGRAEVGTGRAWEAGRRRGSIRRRRPRVVTRTTRARRGPCSTASCSAT TSAASASTVPRLGGTFDARRRMRPSRRAACHTGERDPTSGCTTPGRPAHACGPARRAHGP GRDGGAVRRRRADAGLRARPLNPPFPDPGAAMPPADPTADVAARPTGPAAVAEAFAAAWN AADADALADLFAEDADFVNVVGVWWTRRRQIRVNHALGFRWMFPASRLVLGQVRVRELGD VAVVHAPWTMTGQTAPDGDEAGERTGVLLLVVRRTEAGAWEAVAGQNTDSVPEAQTHLAD DDGLAAVHYHPSAWIDPDDDPEGPEAC >gi|289557843|gb|ADCD01000042.1| GENE 43 50661 - 51221 557 186 aa, chain - ## HITS:1 COG:MT2743 KEGG:ns NR:ns ## COG: MT2743 COG0454 # Protein_GI_number: 15842207 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Mycobacterium tuberculosis CDC1551 # 17 180 3 150 156 79 36.0 4e-15 MTSAPRAAVVRPARPEDAPAIAAIAAATFPDASPASLPRAAVDAHIALHLSEAAVAAWIA DPERIVLVGAAADAPETLLGYAMYETAATPEAPVTERLGDVLAGHLSKLYVLAEGRGTGL AEALVHDGVERLLRLGFRHVWLGTNARNTRANRFYERLGFATIGARQFVVGGERVEDDWV RLLTVE >gi|289557843|gb|ADCD01000042.1| GENE 44 51319 - 53778 2081 819 aa, chain - ## HITS:1 COG:lin2460 KEGG:ns NR:ns ## COG: lin2460 COG1511 # Protein_GI_number: 16801522 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 10 776 12 875 927 304 27.0 6e-82 MLFRYELRRFRRGLPLLALLFIFLVPAIYGALYLSANWDPYGAMDRLPVAIVNEDEPVQR GDTTLRTGADMTERLKDDRAFDWRETTREEAEEGLREGRYYLVLEIPAELSRDLVSPEGG GTPRQAQITLRRDDANGFVIGSVTNASQAKVEAAVNRSAIEAYFEAVFASLGELRSGMVD AADGAAQLADGTASAVDGASRLEDGIVQAHDGSGKLAEGAGQLATGAGDLADGAAQADDG AQRLAEGAASAQDGAGRLADGLDQARGGSQALADGAGQLAENAPALRQGATDLSDGLAQL QTGSAELTDGATQVADGTQQLYDTVIPGLDQVIERQDAVAADVAAVDEDVQRVAEVAGTA EDGAGARIADAQAALAALAEEDPTLAESEQYAALQEALTGADERVTAVAGRAEEAAATSA AANERVQGFVEDDVAASAKADLTDLNDGAHAVAAGAEKLQGGIGAAKDGADSLADGAGRF ADGLEQLGSGATELDGGLAQLQDGAGELQSGLGELTDGATTLAEGNAALHDGALTLQDGA GQLESGATELDDGLAQLQDGAGELHTGLGTLDDGAHELASGLSDGVDRVPALTEDERDEA ALVMSRPVEAVMQVDNSAEVYGRGMAPMFFSIALWVFGIAAFNIMRPISGRLLAGRRNPV AIALAAWLPVGIVAVGGGLLMLAATLPLGLAPVHPVRAVALTVLVAVVFSLIAHLVQTAL GTPGSALLLVLLILQLASTGGTYPAEVLPGFFQALHPFMPMSYSIEAFRNAISGGLDQRF WVPVVVLMGIGAAALALDVLVVRRRRRFRMKDLHPALQA >gi|289557843|gb|ADCD01000042.1| GENE 45 52919 - 53479 204 186 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|166999212|ref|ZP_02265058.1| 60S ribosomal protein L19 [Burkholderia mallei PRL-20] # 1 181 5 184 228 83 37 5e-15 RRAGAFSASCPAPSARAWEPPRAWSSPSARRPAPSCADAAPSASRWAPSSAWAAPSARSP APVASWPAPSASLPEPSWAWTIPSSSRLAPSTAEAVPSASCAAPSAASTMPDRSSPRLAK TASKYASIADRFTAASTLAWLAFVTEPITKPLASSRRRVICACRGVPPPSGLTRSRLSSA GISRTR >gi|289557843|gb|ADCD01000042.1| GENE 46 53778 - 55169 633 463 aa, chain - ## HITS:1 COG:no KEGG:Mlut_22300 NR:ns ## KEGG: Mlut_22300 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 203 463 1 261 261 392 95.0 1e-107 MPLDRQRVHEHHEHGRSVRDLLVRDVGQHAVLAQQAGQEVPPPDGQRPVGSPHGGLAQAH GLELVEEQGPGARGLEHDVGQGLRHAGHQVLARQVGVVQGVGDAVHGSGGRPLELDGAGG GEEVRLPRETGIDGALRVAGLRRDAGEGGARVTLPSEHPSRVVEDGRADILAAGSGRHVA LSMPMVLNTDGIESASTRQRGPMSSTPTDADHHGPGPAPDPAHLDDLPPATLVARGLTLR GSRGPVFGPLDLVLPPQTHLAVLGTQGSGRSALLLALTGRLQGVRGELVLTGGPVDVALD GPERPAARAYRPPIDAARHPHALRARTAIAHTTDVVELEPALTAAEVVDERCLTDGVRRR AGRARFALLADAVRLTVAPEAVVGELSAPDRALLAAVVACLRPTRLVTFDDVDATLTLDE LAALHAALDVLKDHGHPFAVSAVASAPVPRDAVVLTLSPVREN >gi|289557843|gb|ADCD01000042.1| GENE 47 55266 - 56033 538 255 aa, chain - ## HITS:1 COG:Cgl0132 KEGG:ns NR:ns ## COG: Cgl0132 COG0730 # Protein_GI_number: 19551382 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Corynebacterium glutamicum # 10 250 7 248 252 112 38.0 6e-25 MDPSLVWLPAVVALAAITLGGTLQRVSGMGVGMIAAPTLSLLLGPVAGVTLSNVAASVSA VLLFAMLHRHVDWPRFVRLAPLLVTGSFAGAWAVRVLDAHALEILLGSSVLVAVAAVLGL QQRFTAQGDGAVFASGAVAGFMNTTAGIAGPALAVYAVASRWDQRSWAATLQPVFLLANL TSLVTKSLFGAAVPAGLHVPWPVWVAVVAGGPLGVLLGSAVARRVDPAKARVLAICLAGV GGTVALVRGVAGTLG >gi|289557843|gb|ADCD01000042.1| GENE 48 56108 - 57388 922 426 aa, chain + ## HITS:1 COG:Rv0688 KEGG:ns NR:ns ## COG: Rv0688 COG0446 # Protein_GI_number: 15607828 # Func_class: R General function prediction only # Function: Uncharacterized NAD(FAD)-dependent dehydrogenases # Organism: Mycobacterium tuberculosis H37Rv # 11 412 18 400 406 140 32.0 4e-33 MAQHSSTPYPLVIVGSGPAGASAARAYLDAGGPGPVLILTSDVDHPYERPPLSKELLRGT AEPAPTVLDGLPDAVELRRGVTVTRADLGVRTLWAAEEPIRFERLILALGARPVPLPDVE DDAEVHLLRSFADARRLVASAGHARSAVVVGSGFIGCEAAASLALRGVETTLVTPDEVPQ QRRLGRAAGERIAEWLTGAGVTLRTGVRVSGIEAPRTIHLDDGVTLAPDLILAAVGMEPG GGLLEGTELTVHEGRIVADEHLAAAPGVWVAGDASRARHAVAGRPIVVEHWGDALAMGEV AGANAAVTRVSVPDATAGQSSALAHEADADEGALRSWDQVPGFWSTIGEHLLKHSAWGDG HTTARLVERPGSFTVWYADEEDRLVGVLTYNADDDAARGRELVAAGAAWSEVSGDLRGEL RTDADA >gi|289557843|gb|ADCD01000042.1| GENE 49 57416 - 58306 669 296 aa, chain - ## HITS:1 COG:no KEGG:Achl_0157 NR:ns ## KEGG: Achl_0157 # Name: not_defined # Def: peptidase C60 sortase A and B # Organism: A.chlorophenolicus # Pathway: not_defined # 144 292 84 233 235 162 58.0 1e-38 MIRIRPARRGRLVTSAAALCLLLTGCAGQAASTPDPAASASAAQAQRSREARAAEASASR AAASSSAEAVRASAAAEKSAAAEASAKASRAAASAAAEEAAAEEAARAQAEAETAAAQAA AAEEAARVAEEERLAQEAVVAEGLDDSPPVSFTIPSIGAGSDLMRLLLRDDGSLAVPPAE PGSPAAWYANSPSPGQRGPAVLLGHVNATDGSAGVFAHLTDLAPGDTIEVEREDGAVAVF AVDRGVTYGKDEFPTDEVYGDTDVPELRLITCDGYNAFTREFEENHIVYATLVDVY >gi|289557843|gb|ADCD01000042.1| GENE 50 58336 - 58998 668 220 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|289705383|ref|ZP_06501779.1| ## NR: gi|289705383|ref|ZP_06501779.1| excalibur domain protein [Micrococcus luteus SK58] # 1 220 1 220 220 349 100.0 6e-95 MKKIVTGATLTAALGLSLFAAAPATAVEAPRNCSDVYEMGFYNVPRGHEWYKPKMDGGGD GLACENSDGKYKGLTRLDKPAVNDSTDYHDPTDQALPDAAYTYPDCKDAYAAGVFNIPAT HPDYHDDLDSDQDGVGCEYNVEYGVIVEGREQAAAAEIEAIKTGAVVETEDESQVSVVPV GAAETGVAPAADPAAAFAVGALGLAGVAGAAVLVRRRAQA >gi|289557843|gb|ADCD01000042.1| GENE 51 59191 - 59403 207 70 aa, chain - ## HITS:1 COG:no KEGG:Mlut_22380 NR:ns ## KEGG: Mlut_22380 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 70 1 70 70 98 88.0 6e-20 MTHHENHDRQALAAGETYLIHVLETSDPPGNPDHYRITDAVEAHHEATGSYDVEAAGIDV ARDLLARHAK >gi|289557843|gb|ADCD01000042.1| GENE 52 59507 - 60715 837 402 aa, chain - ## HITS:1 COG:no KEGG:Mlut_22400 NR:ns ## KEGG: Mlut_22400 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 4 398 5 408 409 500 73.0 1e-140 MAATPAPTRGTDWHPPWLSLPPDLPGRLAPAIPAIMQRIIETVPEQIPAYVSARDGRYGE NLTRGVTAALEQLMSLPGTARPALSPETRALMAYLGAGEFREGRTMDALLGAYRASARIV FRDLSAECARLGMDMSVVIDLGESIWAYIDELSSVSAQAYAGAQSARAGVLERRRTDLAS ALVRGGMEEEKIQRLAGIADWRLPGRLAVVVLPADAEADTRDRLVHAGLVMEGDDELVSI LDASGDRGRRARLLGLIGDVPAVVGPAVDWRLVPHSYRVAHTLAGQEAAAVGTPVFAEDH LARVALGAEPRVVEELAARVLAPLAALSGAKRAVLEETLLSWLLHWGQRAPIAAELSVHP QTVGYRMGRLRELFGNALEDPDARFDLEIALRARREGVVPAE >gi|289557843|gb|ADCD01000042.1| GENE 53 60802 - 61854 819 350 aa, chain + ## HITS:1 COG:MT3327 KEGG:ns NR:ns ## COG: MT3327 COG1018 # Protein_GI_number: 15842819 # Func_class: C Energy production and conversion # Function: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 # Organism: Mycobacterium tuberculosis CDC1551 # 2 350 27 380 380 249 45.0 6e-66 MPGPFLLTRLVTTLLHPLTPQDVLGLLDPVHSSRQLRGVVTSVTRATPGAATIAFRPGPG WRAHDAGQWARIGVDVDGVRQWRSYSLSAPAGADPEITVSDIGLVSGTLVRHTKPGDVLF LDIPEGDFTLPDEPRPLLMLTAGSGLTPVMSMIRTLVPARRDADVVLIHSSRTPEDALFR EELAELADQFPGLRVVHHHTAEAGRLDLSSPAQLEGVCPDWRERAAYACGPAGFLDDAEA LWRREAAADLTIERFQADFAPGVAGAGGRVVFEHADVEVDAPGDVPLLVVAEDAGVAAPA GCRMGICHACLTPLRSGQVTDLRTGQVHGEPGELVQTCVSAAAGPLSLDL >gi|289557843|gb|ADCD01000042.1| GENE 54 61923 - 63221 1136 432 aa, chain + ## HITS:1 COG:MT3326 KEGG:ns NR:ns ## COG: MT3326 COG3239 # Protein_GI_number: 15842818 # Func_class: I Lipid transport and metabolism # Function: Fatty acid desaturase # Organism: Mycobacterium tuberculosis CDC1551 # 84 432 10 359 427 376 52.0 1e-104 MTQTPTAPDRTGATAPDDLALAIPGTTVRGRAARVLPQDRPDTTSWAPRTAESRAATSRP TAAATTPGLPGAVGSPAVRPPGAAHLTDAQVAELGRELDAIRDDVLSRRGASDAAYIRRV IRWQRRLELGGRALLLNARHPAAFVAGTAMLTVAKIVENMEIGHNVLHGQWDWMRDPDIH STTWEWDFVTPSRAWQNTHNDLHHRWTNVVGKDRDVGYNVLRMDESEPWRPRHLLNPVIN AGLAPIFEWGIALYDLELDRVRTGEKSREELMTDLRSVGVKAARQFAKDYVATPAVAEVL TGSGKAALVGTLLANGLRNIWAHAVIFCGHFPEGAETFSEEMVDGETRGDWYVRQMIGSA NISGSKLMHFMTGNLSHQVEHHLFPDLPSSRYAEVAPKVREICARYGLPYTTGPLLRQVG SAWKKVFRLALP >gi|289557843|gb|ADCD01000042.1| GENE 55 63383 - 63862 457 159 aa, chain - ## HITS:1 COG:no KEGG:Mlut_22480 NR:ns ## KEGG: Mlut_22480 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 158 51 209 212 244 82.0 7e-64 MEHIDETALPAPEDRVVSATRHIDAPAGAVFELIADPSRQPEWDGNDNLAEAASGQRVTA VGNVFVMTLQKGVDRANHVVEFEEGRRIAWKRSEVGGEPFGQLWRWEVEGDDDGGCRVTH TYDWTRLADPKRIQKALRTGEEQLRASIDRLAELAERQN >gi|289557843|gb|ADCD01000042.1| GENE 56 63937 - 64191 306 84 aa, chain - ## HITS:1 COG:no KEGG:Mlut_22520 NR:ns ## KEGG: Mlut_22520 # Name: not_defined # Def: glutaredoxin-like protein # Organism: M.luteus # Pathway: not_defined # 1 84 1 86 86 154 93.0 1e-36 MSQNVLTVYGADWCRDCLRTKRQLDELGVAYDYVDLVADPAQADAAERISGRKNIPVVVF PDGDHQVEPINEETAAKLTALGLI >gi|289557843|gb|ADCD01000042.1| GENE 57 64227 - 65045 647 272 aa, chain + ## HITS:1 COG:Cgl1208 KEGG:ns NR:ns ## COG: Cgl1208 COG0421 # Protein_GI_number: 19552458 # Func_class: E Amino acid transport and metabolism # Function: Spermidine synthase # Organism: Corynebacterium glutamicum # 30 231 42 239 314 82 29.0 1e-15 MPAQPSPSGHTVHLSTSGVDARITPDEFGGFVLEIGGAVQSHVDLADPARIRYEYLRRMA HVLDAASPTGAPVRVLHLGAGALTLPRYLQATRPGSEQTVVDLDRELVSFVLAELPLPAG TDLVSVVADARLAAVDLAMDGERFDAVVLDIGTGEEGAEHLRGAVFYGELLELLTAGGVL LVNIGDDAGLRFLGAELGALEEAAAEAGVPGPWTLADRGMLERLDWGNVVLAAGAPLGEA GCTERLAAAGPHPAAVLDPAESAALASRIRRA >gi|289557843|gb|ADCD01000042.1| GENE 58 65061 - 66221 431 386 aa, chain - ## HITS:1 COG:Cgl1040 KEGG:ns NR:ns ## COG: Cgl1040 COG1846 # Protein_GI_number: 19552290 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Corynebacterium glutamicum # 227 375 11 158 158 122 43.0 2e-27 MLQGDLAGGALAVDTRSGGCLAHQQAQHEADHRDPQSHPEQPRVADGAGEEQPQGGSDRG GQGGAQREVAGGLRASPVGDGRLGQGHDGGAREGVAGAVEHAHRHEGRQRGGDEVERAGQ RDGDQGHHQDAALAEAVHHVAGDHAAEGGADDEGARGQPRPGVRGGELPDRVHGHGGDEG VEREELEEGDHPGEDEGGGGDAFLLGDLHDAKGSIVCMMQSSEGAWADPVRGIMYEHMLL LRVATQGVAPYGRSSALERSATVLLARLEAGGAMSVAELADAFDLDVSTVHRQVAAAMKA GLVERVADPDGGSARLHRPTEEGRARLAAELSSRADNVAQIVASWPAEDVVEFSRLLRRF NEGAEERRGHPWPRPQTGPGAEDPRP >gi|289557843|gb|ADCD01000042.1| GENE 59 65595 - 66830 1090 411 aa, chain + ## HITS:1 COG:Cgl1041 KEGG:ns NR:ns ## COG: Cgl1041 COG0477 # Protein_GI_number: 19552291 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Corynebacterium glutamicum # 16 400 1 372 391 325 47.0 9e-89 MQIAEQERIASPTFVLAWVVSFLQFLAFYALVTTMAVYAVRQFAASDAGAGLASSAFVIG ATLSRVVTGHVVDRFGKRRVLVVALVAVALSCTLYLVASSLPALVAVRMLHGASYAFAST AVMALAQAAIPDGRRAEATGHLALGTTLATAIGPALGLFLAGSIGYAWLFRVTLGITVVS LVLGLLVREAPAAAGVDGERAAGEVPLEHPAPAVGFRLRSVLHPAVLPISGFMLLVGLSY AGILTYLNAYSVERGLAAGAGLFFLAYAAAMLVMRLTLGTLQDRRGDDAVVYPALLCFTA ALLVLAFATRDWQVVLAGALSGLGYGTLMPAAQAIAVNAVPSHQLGAGISTLMLFADVGL GLGPVLLGGLVASAGYGAMYAALAGVLLIAAGYYFVMHGRRHGRRGAAARA >gi|289557843|gb|ADCD01000042.1| GENE 60 66871 - 67902 739 343 aa, chain - ## HITS:1 COG:STM3549 KEGG:ns NR:ns ## COG: STM3549 COG3238 # Protein_GI_number: 16766835 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 33 342 7 311 323 151 34.0 2e-36 MPPEPSAPSAERGPARPRPADVAARPDAPSPRATALLFTLAVAAGSVMPLQGRINSRLAH LTGDPVLAALCSFAAGLVVMVLVSVLTPRGRRGLARIRPALAAGSVRPWYAVAGVIGGLL VLTQSATIGPLGVAVFTVAVVTGQVVGGMVVDRLGLSPAGVQRLTPRRVTGAALALAAVA LVVWPSLGEAGGGPGWALLALLPLLAGLATAGQQVFNARQTTAYGTAIPATLVNFTAGVL FLGIVWGGIALASGHGLPALPHDWRLYLGGPLGCVFIGVGAMVVPRLGVFAATLGLVSGN LLGSLVVDLVAPTDGSTVTTTTVLGTLGALAAVTLASWPARRR >gi|289557843|gb|ADCD01000042.1| GENE 61 67920 - 68483 370 187 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227383977|ref|ZP_03867395.1| acetyltransferase, ribosomal protein N-acetylase [Jonesia denitrificans DSM 20603] # 1 185 1 188 203 147 45 3e-34 MKHEIVLTRGDLTLRPLAPEDGPALRELVDAAMWAGNSAPLPVDGAAMSAHLAELIEREG TFAFAVEQGGELVGRTSLYDLVPGLRVEVGHTVYARRVWGTSVNPGCKLLLFGHAFEKWA LERVALRCDHRNARSHAAIARLGATFEGTLRRFRPAADGTIADVDYFSVVREEWPTVRGG LEARLAA >gi|289557843|gb|ADCD01000042.1| GENE 62 68575 - 69150 409 191 aa, chain - ## HITS:1 COG:no KEGG:Mlut_22610 NR:ns ## KEGG: Mlut_22610 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 176 1 176 194 132 68.0 6e-30 MTITAVDTPSLTTEAAAVLAATPGMRYADFLTAAPAVPGIVAVVAEESARAALGLTPATG DVLAVDVADESLQCREVRAAFQSGRTGASQLRQGLAALLRDVLALDVERTSPGAAGAGFA LTPESEETLTAWMREHLTLRAWVAQDASALEGVAREVAADLAPALQPGALEASVAQRVAA MRASARRSATL >gi|289557843|gb|ADCD01000042.1| GENE 63 69398 - 70699 1269 433 aa, chain + ## HITS:1 COG:L0049 KEGG:ns NR:ns ## COG: L0049 COG0133 # Protein_GI_number: 15673445 # Func_class: E Amino acid transport and metabolism # Function: Tryptophan synthase beta chain # Organism: Lactococcus lactis # 38 422 10 394 402 400 52.0 1e-111 MTHRNPEDNALRGATEPRTLAEACDLVTTPDLDVSADGMFGQYGGAHLPPQLAGPMAEVA RAYAEARQDPEFYAEYRRLLRDAVGRPSPLTPLDRLSDELGGARIVLKREDLNHTGAHKI NHTIGEALLAKRMGKRSLIAETGAGQHGVALATAAAMVGLDCEIHMGAIDVAKQHPNVVR MRLLGTKVVSVEREGRSLKEAVDSAFEVYAADPEKYLFAIGSVVGPHPFPTMIRDFQSVV GREARAQFQERFGALPSAVIAAVGGGSNAMGAFTAFLDDADVALVGVEPGGRSTAKGEHA MTMTQGRDGVLHGMATLVLADDDGTPDPVHSIASGLDYPGVGPQHAHFARLGRVRYVAED DAAVLDAFQRLTRLEGVIPALESAHAVAHAIRLAPQMGRDERILVNLSGRGDKDVDYVAE KLGLTGEADEVVR >gi|289557843|gb|ADCD01000042.1| GENE 64 70754 - 71455 670 233 aa, chain + ## HITS:1 COG:slr0593 KEGG:ns NR:ns ## COG: slr0593 COG0664 # Protein_GI_number: 16332316 # Func_class: T Signal transduction mechanisms # Function: cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases # Organism: Synechocystis # 85 230 286 430 434 68 33.0 1e-11 MTLMWGAVAASSLLVGAVLATLRRWHMGTIGLVLAFGAGALIASVSFELAEAGVQAAGPA AVGIGLTLGAAAYFLGDRAVERSAARSGGSSSGAALTVGALLDGIPEQIVLGIGLAAGEG VSLALLVAIFMSNLPESIAATADSLDGGKTRRHLLIQWSLVAVVCALATWGGGLIADVAS PALTGGIQGFAAGALLVMLIDTMIPEAREKGGERAGLLTVVGFALGAFLSLVV >gi|289557843|gb|ADCD01000042.1| GENE 65 71486 - 72514 837 342 aa, chain - ## HITS:1 COG:Cgl2083 KEGG:ns NR:ns ## COG: Cgl2083 COG1028 # Protein_GI_number: 19553333 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Corynebacterium glutamicum # 52 342 5 295 295 319 58.0 6e-87 MSGGPAVSRGSAGGLLPTLEGRRADRASPRDHEEHPVAHDDANTTTTDQLTLQDPTKRYP VISPPEQSLPGTGLDAEMTPKADLGEKSYRGTGRLEGRKALITGGDSGIGAATAIAFARE GADVVITYLPEEEKDAQHVLEVLQAEGRTAAGIPGDLRDKTFCADLVAQAVEKLGGLDVL VNNGGKQVAQDSIEDIDDEQLEATFDINILAQFRLVKAALPHLKPGSTIINTTSVVAYMA PEQLVDYSATKAAINTFTKALGQQLAPKGIRVNAVAPGPIWTPLQPSGGQKPEALPEFGQ STPLGRAGQPTELAPAYVFLASPESSYVVGATIPVTGGMPTP >gi|289557843|gb|ADCD01000042.1| GENE 66 72624 - 74255 1180 543 aa, chain - ## HITS:1 COG:SMa0101 KEGG:ns NR:ns ## COG: SMa0101 COG1574 # Protein_GI_number: 16262503 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase with the TIM-barrel fold # Organism: Sinorhizobium meliloti # 1 540 5 538 541 202 34.0 1e-51 MQLDLIVENARLITGDPARPSASRLGVWRGIVAGVDEDLDGLAARERLDARGRTVLAGFN DAHAHSVWFGQSRLDVDLEGARTAEEVHRRVRARAAELDPGAWVTCTGFDPGHLTGPQPD RDGLDAAASGRPVLIRHNTGHAVTVSGAVLVLAGVGEQVLQQPEGGRILTDAAGRPTGLL EETAMSLVTRLLQPESHEHIGACLARASQEYAAEGITSVTDAGVAGGWIGHSPLEFGAYQ RARDAGLLRTRFQTMVTLDALRPVDGHPDDGTHLTLDAGVRTGVGDEWLQIGPAKVFTDG SMLGQTAAMTEDYCGHGHGRGYLQQDAGEMRRACLGAAAAGWALALHAIGDAALDFALDV IAEARGRFGRPVMPHRVEHGGVVRDDQVARMAELEVVMATQPNFISAFGGSVRERIGPER AALSYPAGRLLRAGLVLPGSSDRPVAGGRPLKVIQDFVLRRTETGEQYGPDAERLTVAEA LHAYTVGSAEATGWGGRKGRLVAGQLADFTVLSEDPRAVPSDQIAAIDVVATAVGGEFVH GGL >gi|289557843|gb|ADCD01000042.1| GENE 67 74336 - 75505 967 389 aa, chain - ## HITS:1 COG:mlr1566 KEGG:ns NR:ns ## COG: mlr1566 COG0626 # Protein_GI_number: 13471558 # Func_class: E Amino acid transport and metabolism # Function: Cystathionine beta-lyases/cystathionine gamma-synthases # Organism: Mesorhizobium loti # 14 384 14 368 371 329 49.0 5e-90 MASPQPPAFGPVLHHRAHGMAPGDAISPPLVHASAFHLPGSGPDGAPVAPGADVAFQYAR WGTPTWAALEAALGVLEDADVAVVPSGMAAIAAALLPVLRPGDRALLPSDGYGATRALAA EHLVPAGVHVDFVSTPGLADADLSDYDLVFVETPSNPGLRVADLADVAARAHANGRRDGK GALVVVDNTSLTPLGQRPLDLGADVVVASDTKALNGHTDALGGHVASRDPELMARVRGWR TLAGGILGTHEAWLIHRGLETLEVRFARMCASALAVAELATGHPAVHAVAYPGLPDHPDA AIVARQMTAAGVVVGLEFADAAAAERFIGAAAYVVAQTSFGGTHTAAERRARWGDDVPAG FVRLSMGVEPTAELLADLTRALDAAAEPA >gi|289557843|gb|ADCD01000042.1| GENE 68 75771 - 76649 769 292 aa, chain - ## HITS:1 COG:PA1254 KEGG:ns NR:ns ## COG: PA1254 COG0329 # Protein_GI_number: 15596451 # Func_class: E Amino acid transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: Dihydrodipicolinate synthase/N-acetylneuraminate lyase # Organism: Pseudomonas aeruginosa # 7 287 9 291 305 122 28.0 7e-28 MTHVLQGVLAVATTPFDADGRQDLDRLVEGVERVLAAGVDGILLLGATGEAMALTPQEQE AQVRRVVEAVQGRAPVVVGCMEYRPSHVIERIAAAKEWGAAGAMVTPSYYGGLAPETAVA ALEPVFAASELPLLLYNNPHSVGTDLLPEHMEPLLAHDSFWGVKETSGEATRVRELRERL GEKVTVFVGADGLALEGFTQGAGGWVAASAWLLPEQCVALWQAARAGDWSTAVQLWDRLS GPLSAIEGSGDFISLIKQAMGRIGLEQGPVRPPLGTADPAEVDALMAAVDAL >gi|289557843|gb|ADCD01000042.1| GENE 69 76877 - 78349 688 490 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|145634045|ref|ZP_01789756.1| 50S ribosomal protein L21 [Haemophilus influenzae PittAA] # 3 443 6 440 456 269 38 4e-71 MDILGTINDAIWTPMAYFALAVGLVFTLVTKAVQFRRIPDMLREITARPLEDDGVSPLQA LLLTLASRVGVGNIAGVGTAVYAGGPGAIFWMVVVALLGSASSFAETVLAQVFKRRIDGE HRGGAPFYVEHGLKLRWLAVLLAIGYVVGYGFIFSGVQSNNIANSMDVAFGMPAWLTAVL LTGLFAVTIVGGTKRIIGVAQLAVPIMAIGYILCTAAIILANLDQVLPTIQLVLASAFGR DAVFGGMAGAAIAWGVRRAVFSNVAGVGEGTFGSAAASVAHPAQQGLIQSLSIFIDTVVV CQATGIMLLITQSYNVSHEGRTMVENLPGVDAGVAFTQTALDTLVTGWGAAFVAIALLFF AFTSMIAFYYIAETNLTYIRGRSGGWPSWAVKLGALAVTAYGAVVSADAMWTVGDIGYGL LGWANMIAILALLPIVIKVTRDYDRQRRAGLQPVFQPEELGIRGADYWTEARTRDLLDTV RTRTDHSPVA >gi|289557843|gb|ADCD01000042.1| GENE 70 78383 - 79384 756 333 aa, chain + ## HITS:1 COG:mll3979 KEGG:ns NR:ns ## COG: mll3979 COG3938 # Protein_GI_number: 13473394 # Func_class: E Amino acid transport and metabolism # Function: Proline racemase # Organism: Mesorhizobium loti # 7 333 6 332 333 269 46.0 6e-72 MRSTNVYHAVDSHTEGMPVRVITGGVPVLPGTSMAERRQWFMENMDSLRLLLMREPRGHS AMSGVILQPPTRPDADWGVLFIETSGVLPMCGHGTIGTATVLVETGMVPVTEPTTTLRLE VPAGLVEAQVDVEDGRARSVTLRNVPSFLLRRDAVVEVPGLGAVRHDLAFGGNFYAIVKL EEIGLPFDRAAKDRLMSAALDIMKAINEADEPVHPEREDIRGVHHVYLEAPGSDARLSRH AMAIHPGMFDRSPCGTGTSARMAQLHARGELPLDTDFVNESFIGSRFTGRLLETTEVGGL PAVVPTITGRAWVTGTAQYMIDPTDPYPEGFVL >gi|289557843|gb|ADCD01000042.1| GENE 71 79417 - 80148 577 243 aa, chain + ## HITS:1 COG:BMEII0281 KEGG:ns NR:ns ## COG: BMEII0281 COG1802 # Protein_GI_number: 17988626 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Brucella melitensis # 17 211 22 216 238 75 29.0 1e-13 MTLPPSSLTSLPPVQNLRSTVTQALRTAVIVGDLVEEEVYSAPVLAAQLGVSATPVREAM MTLARDGLVEPVKNKGFRVTAMTTHDLEQQTQVRQLLEAPAMQGVAGRIPPADLDALRTL ADEIQTAAQRSDLVEYLSSDLSFHSRLLAHTHNDQLTALCTSLRGRTRLRALRTLAESGQ LIDSAREHHQLLDLLASGDGAGAYRLTLQHIGHASRLWATGSEEQPQATALLDLIAPTER PRT >gi|289557843|gb|ADCD01000042.1| GENE 72 80145 - 81341 827 398 aa, chain + ## HITS:1 COG:PA2195 KEGG:ns NR:ns ## COG: PA2195 COG0665 # Protein_GI_number: 15597391 # Func_class: E Amino acid transport and metabolism # Function: Glycine/D-amino acid oxidases (deaminating) # Organism: Pseudomonas aeruginosa # 6 385 3 409 417 132 29.0 1e-30 MSAPTRDVDVLVIGAGAVGAAVAHFCAAAGMAVHVLDRGRPGAGTSSRCEGNILVSDKEH GPELELSRYSLGLWAGELGEHAQAWEFERKGGIIVASQESSLQSLRRALAVQHQHGIRVE EMDAAALRAIEPHVTPDAVGAAFYPDDSQVMPMMVVNRLLHLAREHGATVSADTEVTGML RRGDAVIGVRTSRGDVYADAVVNAAGPWAGGVAHLAGVHLPVVPRRGYVMVTAVQPPRVH HKVYAAEYIDDVGTSDASLQTSPVVESTPAGSILIGSSRERVGFSDELNHEALRGMAAGA VRLFPFLRDVPVLRHYHGFRPYSLDHVPMIGPDSRAPGLWHATGHEGAGIGCSVGTGKLL AQQLAGTEPDLDMTPFDPARFGEPPRRPSTTPLEGALT >gi|289557843|gb|ADCD01000042.1| GENE 73 81338 - 81652 202 104 aa, chain + ## HITS:1 COG:AF0273 KEGG:ns NR:ns ## COG: AF0273 COG0446 # Protein_GI_number: 11497889 # Func_class: R General function prediction only # Function: Uncharacterized NAD(FAD)-dependent dehydrogenases # Organism: Archaeoglobus fulgidus # 5 82 23 99 534 61 47.0 3e-10 MSDAVTITVDGHELTVPPGRTLAAALTLEDGRPGWRATRRTEGRRGLFCGIGACFDCLAE VDGRPGMRTCMVTVHAGMQVRTGAPTDGASGPFDDAGQADEHAG >gi|289557843|gb|ADCD01000042.1| GENE 74 81642 - 83156 859 504 aa, chain + ## HITS:1 COG:PAB0212 KEGG:ns NR:ns ## COG: PAB0212 COG0446 # Protein_GI_number: 14520528 # Func_class: R General function prediction only # Function: Uncharacterized NAD(FAD)-dependent dehydrogenases # Organism: Pyrococcus abyssi # 16 360 121 437 481 135 30.0 1e-31 MPAEKTHPRAQLEAVDVAVVGAGPAGLAAAGAAAAAGASVLLLDASAREGGQYWRHRPED VAAEAARPAWHHGWSTFLSLRERVDTARRHGRLTHLQSTQVISIDVHEDAGDFTLHTAAT PESQGPAGLRAVHAHTVVLATGAYDRHLPVPGWTLPGVMAAGGIQAFIKTQGVAPGRRVL LAGTGPFLLAAAASVLRSGAEVAAVCESTDLTGWAPGGATAALVPSKGAEGAEYAALLAR RRVPYRLRRVVTRILGAGRVEAVATAAVDRSGTLIPGTEEVYEDVDVVGLGWGFAPQTEL LLQTAARTRLDADGSLVGVVDARQESSVPGLFLAGELTGVTGAVGAVAEGRIAGASAAGR ASTGPATARERTAAWADRAARTRHRLFARAMHTAHPVPEGWQSWMSEDTTVCRCEEVPYG EVLDARDGLHLPDPRSLKGQTRAGMGMCQGRMCGFAMTCLTAGTDPAGPLRAEHARQVGV RPLSSPVPLGAFLTSDDEPDRPRP >gi|289557843|gb|ADCD01000042.1| GENE 75 83189 - 84673 1103 494 aa, chain + ## HITS:1 COG:RSc2110 KEGG:ns NR:ns ## COG: RSc2110 COG1012 # Protein_GI_number: 17546829 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Ralstonia solanacearum # 10 491 20 495 502 483 51.0 1e-136 MTPQLPTGTPTEAFVDGRFVPASDGATVSTVNPATGEHLADVAACGPQDVDRAVQAARSA FESGVWSRIHPNERRTVLMRLVELLEENAEDLARLEALDAGKPISDCREFDLPATIEAVR WYAEAADKFFGKTTPVGGEAMGMIVHEPLGVVGAVLPWNFPLSMLTWKLGPALASGCSVV VKPPELASLTTLRFAELAAEAGVPNGVLNVVPGLGHVAGQALGLHPDVDLITFTGSNEVG RRFLEYSAQSNLKKVVLELGGKAPQVVLADNRDRLAEVAADLAGAAFGNNGQNCTAGSRI LVDRSIMDEFLAELVKVTEEQWPVGDPMDEGTVLGSLIEESALTRCTAYVDGAVADGAVV ATGGRRLREDSGGWFYAPTVVTNVREDMPIAREEIFGPVTVVIPFDGVEDALRIANDTDF GLAANVWGRDLDDVLFLARRIKAGTVSVNGYSEGDISTPFGGYRQSGFGGRDNGMEAFEQ YTETKTIWISLQRG >gi|289557843|gb|ADCD01000042.1| GENE 76 84681 - 86243 623 520 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|145634045|ref|ZP_01789756.1| 50S ribosomal protein L21 [Haemophilus influenzae PittAA] # 1 453 1 440 456 244 34 1e-63 MTMEQFVTAANSIMWSLPMVVGLLALGLYFTIRMAAPQVRLLKDMVGQLVRGGSSSAGIS SFQSFAMALGGRIGVGNIAGVAAAIYLGGPGALFWMWVTAILGAPVALVESSLAQLYKHK VRGEYRGGPAYYILEGLGRNWRWLAVAYAAATVFATVFTGPQIQANAVTAATTEAWGWDP LWVGLGMAVLFCVIVFGGMHRLGRTVGLVVPFMAGAYILVGLLVVGLMWQQVPAMFGLIF SSALGLDSVYGGILGAAVAWGVRRAVYSTEIGTGSGAQASAAAHVSHPVKQGLAQAFSAY VDTLFVCTMTGLMILATNSFNVLGPDEESLLAEHVPGVEEGPAWVQIAIDEALPAFGPSF VAIAVFLFSFTTLLSFAFYAETNVAYLIPNKTAQRAVIAIARLLLAGSMVFGSVQSSALV WAFADFGVGLYTWVNIVALILLSPVAIRLLKDYDRQRRAGQEPVLDPAAIGVRNARLWEQ IHAAYQQTGDLDRAMEHVADTAPDTRAITVVRGGPERGEG >gi|289557843|gb|ADCD01000042.1| GENE 77 86377 - 87273 581 298 aa, chain - ## HITS:1 COG:no KEGG:Mlut_22770 NR:ns ## KEGG: Mlut_22770 # Name: not_defined # Def: predicted transcriptional regulator # Organism: M.luteus # Pathway: not_defined # 1 292 1 282 284 222 56.0 1e-56 MSPLMTVGEFALATGLSAKALRFYDERGLLAPVDVDAHSGYRRYAPGQIRTAAQIRVLRA AGLTVDDVRSVLADPASLSARLEAHAAELRRRRDLEDRALALAAAGVYAAPDPDDDGGPA RPGPVAERTVGPTPWAGVVQRVALDEAGEESTTERANAAFATLFQALAEAGSAPAGPLWT ALRPVPGAADVVETVLAVPLSGPAPAGLRVDGHEVVTGTLPRRVERYVDVRADAGDVDLL DDAPGGALPHPALLGLMDAFDVEDAGVAPEFRQILVDPEAGHVEVVATVREVAGAGQG >gi|289557843|gb|ADCD01000042.1| GENE 78 87432 - 88568 952 378 aa, chain + ## HITS:1 COG:yeeE KEGG:ns NR:ns ## COG: yeeE COG2391 # Protein_GI_number: 16129954 # Func_class: R General function prediction only # Function: Predicted transporter component # Organism: Escherichia coli K12 # 1 352 1 351 352 314 51.0 1e-85 MAGMIITGLLLGLVLGFVFQRGRFCVTGAFRDLFTIRSTRWLTAFMVIVAVQSVGVFALD ALGVITLEAETFPWLGTIIGGLIFGFSIVLAGGCATGTYYRAGEGLVGSWFALIFYIVGA TAFRKGPLAGTTEAVRSVETQTGSFQQLTGLSPWVFVALLVAGVGLAVRHHLRREAAMTR FRLPAAKTGLAHVLTEKAWHPFVTAAIIGVLAILAWPLSWATGRESGLGITGPSANIGAF LGTGELELVDWGVLMVTGLLIGSFIAAKASGEFRVRVPDAQTTVRSIIGGLGMGWGAAWA GGCTIGNAMVNTATFSFQGWTALVFMVLGTGLAAKLFILNHRGKGTTPSPASASGLTSAE GAAADAGAARPVKLTPIG >gi|289557843|gb|ADCD01000042.1| GENE 79 88621 - 88848 226 75 aa, chain + ## HITS:1 COG:SA1849 KEGG:ns NR:ns ## COG: SA1849 COG0425 # Protein_GI_number: 15927619 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted redox protein, regulator of disulfide bond formation # Organism: Staphylococcus aureus N315 # 4 74 3 73 74 90 57.0 6e-19 MAKHLLETDGQVCPFPLVEANQAMQQIPSGDELVIDFDCTQATDSLPRWAAENGHEVTDF VKRGAAEWTITVKKG >gi|289557843|gb|ADCD01000042.1| GENE 80 89143 - 90018 684 291 aa, chain - ## HITS:1 COG:SMc00274 KEGG:ns NR:ns ## COG: SMc00274 COG2084 # Protein_GI_number: 15965455 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases # Organism: Sinorhizobium meliloti # 6 290 5 289 295 144 40.0 1e-34 MTSQAQNVTFVGIGAIGLPMALSVAAAGFDVTGVDFSERQRVAALEQGLPAAADAASAAE ADAVIVMVATPDQLSSAALGQDGLVARMRPGSTLIVMSTVGPEAVRSLVAPAAERGIGLV DAPVTGGIARAARGELRMFVSGDPAAIDAGRAVLDAMGAVVDCGAEPGRGQSFKVVNQLL CAVHIVAGAEALALAERLGLDPAEVLDAVADGAAGSFMLSDRGPRMLEGLDAQVASAIGI FVKDSALVSATAAEAGIAVPVLEAAKQKYLDAAEAGLTLKDDSQVIQTYRS >gi|289557843|gb|ADCD01000042.1| GENE 81 90089 - 91420 908 443 aa, chain + ## HITS:1 COG:BMEII1091 KEGG:ns NR:ns ## COG: BMEII1091 COG3395 # Protein_GI_number: 17989436 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Brucella melitensis # 21 440 13 431 436 420 56.0 1e-117 MFTESNKSGDPARSERCTMPLRAGVIADDFTGATDIAGALVDGGLRTVQFSGAAHVPDHV DADAVVISLKTRSIPPGDAAAQSLEACRALERLGAERIVFKYCSTFDSTAEGNIGPVTDA LLEHLGEDFTVVAPALPVNGRTVYQGHLFVHDRLLQESGMKDHPVTPMRDSDLVRLMERQ SSGRAASVPSTVVGGGSEVLRGELDRLRSEGVRYAVLDTLDDTHLDTIGAAVSGLRLTTG GSGLGSGLARSLAGRAITGAATTAADAWRFTPGRTVVLSGSASEMTNRQVDRYRKIAPSL AVDVVRTLEDATALRDEILAFVLAQDGGPAPLVYATAGPDEVRRLQEVHGRQRVSTAIER LFGTLAAALRERGVSRFVVAGGETSGAVTQALGVTGLRVGPQIAPGVPWTASLDGAVDLA LKSGNFGDEDFFSAAQRLTDPRA >gi|289557843|gb|ADCD01000042.1| GENE 82 91463 - 92260 659 265 aa, chain + ## HITS:1 COG:RSc0020 KEGG:ns NR:ns ## COG: RSc0020 COG3622 # Protein_GI_number: 17544739 # Func_class: G Carbohydrate transport and metabolism # Function: Hydroxypyruvate isomerase # Organism: Ralstonia solanacearum # 1 260 1 262 262 289 58.0 5e-78 MPQFAANLSMMFTERPFLERFAAAAEAGFTGVEYLFPYEYPAAEVAAALRSAGLTQALFN APAGDWDAGERGLASLPGRDAEFERGIATALEYARALACPRVHVMAGIADPDDADARRRY VERIRRACDAAAQHGVEVLLEPINAVDMPGYFLSRVPQARELLAEVDRPNVGLQLDLYHA QITEGDLTRLVDASVDLTRHVQIAGVPDRHEPDTGEVAYEHLFAHLDKAGYTGWVGCEYR PAGRTEDGLGWFAAHRGSQRPGERA >gi|289557843|gb|ADCD01000042.1| GENE 83 92257 - 93045 459 262 aa, chain + ## HITS:1 COG:BMEII1093 KEGG:ns NR:ns ## COG: BMEII1093 COG1349 # Protein_GI_number: 17989438 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Brucella melitensis # 1 254 1 251 263 197 47.0 2e-50 MIADERRRRLVNLVVERGSASVTALADELGVSSMTVRRDVKRLEEEGRLVSVAGGVAKPA RLSLDATHRVKLGIRPREKAAIARRAAELIRPGDLLYLDAGTTMLALARLLAARPAAERV DVVTNDLAVAAAVGEHPGAQIHVLGGRLDAGNLSTDGPTAAAELAGFNIDLAFISASSFD LRGLSVPTEGKAIVKRSIAEHADRCVLVADSSKYGRVSTFKALPLRAFDAIVTDPALPDA VRDRATAVGVDLLLTPLPTLPT >gi|289557843|gb|ADCD01000042.1| GENE 84 93056 - 94015 610 319 aa, chain + ## HITS:1 COG:BMEII1094 KEGG:ns NR:ns ## COG: BMEII1094 COG0451 # Protein_GI_number: 17989439 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Brucella melitensis # 3 317 4 317 321 374 61.0 1e-103 MNIVVTGGAGFLGSRVIRSLLQAQDAGRLPVPVDSVVSLDLAPCPVEDPRVSSRVGDMAD PAVLAEAITADTAGIFHLAAVLSGGAEQDFNLALRVNVDATERLLEAARGTGARPRFVFT SSLAVFGSAVPTVVPEDLATQPESTYGATKAIGELLVNEYSRKGYVDGRVCRLPTISVRP GKPNSAASSFASGIIREPLQGLQAELPVPEDTRMWLSSPDTAVQNLVHAFIVESERLGGW RVLNIPGVSVTVAEMLDALEAVGGPEARARVVPRPDQRVMDIVCSWPGEFDVERTLSLGF RPDSSFEAAVRQFHREFVA >gi|289557843|gb|ADCD01000042.1| GENE 85 94058 - 95455 1115 465 aa, chain + ## HITS:1 COG:STM2913 KEGG:ns NR:ns ## COG: STM2913 COG2610 # Protein_GI_number: 16766219 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism # Function: H+/gluconate symporter and related permeases # Organism: Salmonella typhimurium LT2 # 12 464 8 459 498 418 54.0 1e-116 MNGLEASEIGALVGLTAAVALLIFFVIRTKIHAVLALVIAASIAGLAAGMAPDAVIQAIT TSFGSTLGTIGLVIGMGVMMGRILEVSGAAEKLAYSLIRVLGKGKEEWALAGAGFVISIP IFVDSAFVILQPLVRSLARTSRRSILTLGIALAGGLVVTHHAVPPTPGPLGAAGIFDVNV GEMILWGLILSFPAMIAVTLYAKVMGPKIEAMIERDTGERLSPAEAFGEFQERAAVRERE LPGLFISILPILLPIVLIFLNTFSATMVENNEGALPAGLVSTLAFIGNPVIALLLGVLVA IYGLARNQSRQETLDDMEFGVQSAGIILLVTGAGGALGGVLRESGTAESIGQAVAGLPLP TILIPFVIATIVRLIQGSGTVAIITSASISAPILAAMPDVNMVLAAQAAALGSLFFGYFN DSFFWVVNRMLGIKNAKHQILAWSIPTTIAWATTLVALLIANALV >gi|289557843|gb|ADCD01000042.1| GENE 86 95433 - 95699 75 88 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MHHHLLGRPGTSLVPPVFIQHGERLGVQPAEGGVGGRHEIPALDPDADVAGAAHGESTGE QACTELGDLTAQQGLVGHGAPLRRVRWR >gi|289557843|gb|ADCD01000042.1| GENE 87 95586 - 96089 361 167 aa, chain + ## HITS:1 COG:BMEII1095 KEGG:ns NR:ns ## COG: BMEII1095 COG0235 # Protein_GI_number: 17989440 # Func_class: G Carbohydrate transport and metabolism # Function: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases # Organism: Brucella melitensis # 1 164 54 220 224 176 55.0 2e-44 MTPTNSSLGRLDPEALSVLDEHWRHQAGPRPSKEVVMHRAMYEARPEAQAIVHLHSTYVT AYSCLAEDGGIPPLTPYFVMRLGRDVPTVPYHRPGSAEMLDDILGAGRRSPGVVLANHGS IVAGTTLESAVNAAEELEVSAQLAFLLEGRPTRPLTEAQVQELLGPQ >gi|289557843|gb|ADCD01000042.1| GENE 88 96170 - 97231 947 353 aa, chain - ## HITS:1 COG:L190278 KEGG:ns NR:ns ## COG: L190278 COG1063 # Protein_GI_number: 15673531 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Threonine dehydrogenase and related Zn-dependent dehydrogenases # Organism: Lactococcus lactis # 15 353 1 345 348 278 47.0 9e-75 MTAQTPATPAIPKTMKAVVMRAPGDVVVEEVDTPRVAQPTDVVLKLAAACVCGSDLWPYR GHNDVDHRRMGHEYVGTIVEKGEDVATLEVGDFVIGSFMLSDNTCEICQAGYQSRCVNAG EYTGSQAQYMRVELADGSLVKVPGGEPSDPDRLADYLAASDVLGTGWYAAVAAQAGPGKT IAVVGDGAVGLCAVLAAKTLGAEQVIVFSRHEDRAALAREFGADVVIAERGEEGAAQVRE LTGGYGAHGVCEAVGTQGSMDQALASVRPGGYVGFVGVSHDQTLDGSDLFGREIHLEGGP APVRRFLPELIERIQSGEIQPGRVFTARMPLDDAAEAYQAMDERREIKVLLEV >gi|289557843|gb|ADCD01000042.1| GENE 89 97578 - 98996 1321 472 aa, chain + ## HITS:1 COG:BS_yhfL KEGG:ns NR:ns ## COG: BS_yhfL COG0318 # Protein_GI_number: 16078091 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II # Organism: Bacillus subtilis # 1 468 27 507 513 365 43.0 1e-101 MTYAELQDQSQRLAGLMRQEGIGPGDRVALMVPNIPAFPVVFFAALQLGAVVVPMNPLFK RREIEYYLEDSGASMLWSVPSEEAVEGARERGVPLRTLGEDGLAPHLAESPGPVTETVER DLEDDAVILYTSGTTGRPKGAQLTHRNMGTNADTAAETLIQLQHGETVLGCLPLFHVFGL TCALMAPVTTGASLALIPRFDPAVAAQTVRECAVDVFIGVPTMYGAVLAAAKGHPEDLAS LRLGVSGGSALPVELLRRFEATFDCEILEGYGLSETSPVACFNHPGEAHQPGSIGRAVRG CELQLVTPDGAVVPEGDEETLGEVWIRGENVMKGYWGKPEATAQAITEDGWFRSGDLARR DAAGNYYIVDRTKDMILRGGLNVYPREIEEVLYEHPAVAEAAVVGVPHPELGQEVAAHVV LAPGAHATEEELIQHVKSQVAPYKYPRTVTVRDGLPKTATGKILKRELTPAE >gi|289557843|gb|ADCD01000042.1| GENE 90 99002 - 99505 192 167 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289705423|ref|ZP_06501819.1| ## NR: gi|289705423|ref|ZP_06501819.1| conserved domain protein [Micrococcus luteus SK58] # 1 167 1 167 167 271 100.0 1e-71 MTARARVWAEVLAEAGAVVVPDPVRGIPLDEAGRADLAAPVDRALRVAPPAGVDGASPWW LLETDVPQDDDGGVLPVLRVAVGAPGQVHALLPDCGCDACDPGSDELLEAVDQAVVRADG TAEALGRVPGWSFEALTDACRDLAAGGRPRLPRGTEATVRAGWFPET >gi|289557843|gb|ADCD01000042.1| GENE 91 99534 - 100286 550 250 aa, chain - ## HITS:1 COG:no KEGG:Mlut_22930 NR:ns ## KEGG: Mlut_22930 # Name: not_defined # Def: putative membrane-bound metal-dependent hydrolase # Organism: M.luteus # Pathway: not_defined # 1 250 1 250 256 293 78.0 3e-78 MMGPSHAATGAAAWLALTHWQSPIAVLHLPAELQLLGAVTTAGAAMISDWDHPRATVVHA LPPLTEWLSRGIRHVAGGHRRGTHSLVGIAAFTAVATAAASIQVPIAGHVYTPGQGVIAA FLAAVAAKALRLLPNRGWRAAWALGILVAVSATVLSDGLWWIPASVAVGVSVHILGDALT NNGVALLWPLSPEPPARLWWWQSSGRFRLPLLGRTGSWREWVLVSVVTAFTVVRAVRLVP LAARGVAALF >gi|289557843|gb|ADCD01000042.1| GENE 92 100464 - 101198 548 244 aa, chain - ## HITS:1 COG:PAB0240 KEGG:ns NR:ns ## COG: PAB0240 COG1346 # Protein_GI_number: 14520577 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative effector of murein hydrolase # Organism: Pyrococcus abyssi # 23 240 4 220 224 148 45.0 1e-35 MNAAELTDSLAEAWDALLHTPLFGIALTLAVAVLSRRLWLAARQTALLTPVLVTIVLVAA FLALTGIDYETYMIGGSYLTFLLGPATVALAVPLYRAGPDIRKLLLPVAVGVTVGSLTAM VSAVLIVRMMGGDAALAATFAPKSATTPIAMAVADAGGGIVSLAAVLPVLTGVLGAVFAP WMLDRLRVRDPRVRGLAIGVSSHGIGTARALAEGPKTGAFSALAMACSGVLTALLAPLVL AMTG >gi|289557843|gb|ADCD01000042.1| GENE 93 101195 - 101557 334 120 aa, chain - ## HITS:1 COG:RSc2669 KEGG:ns NR:ns ## COG: RSc2669 COG1380 # Protein_GI_number: 17547388 # Func_class: R General function prediction only # Function: Putative effector of murein hydrolase LrgA # Organism: Ralstonia solanacearum # 1 116 1 116 125 58 38.0 2e-09 MIEGLLILLLCQLAGTLVADTLHLPIPGAVLGMLLLLGLLAWRRPAEDAPVMTASHHLLQ HLPLLFVPAGVGVVAVLGLIGEHRALMLVGFVVPWLLGLVVTAGVAAPLARRLTDKEDAQ >gi|289557843|gb|ADCD01000042.1| GENE 94 101554 - 102261 536 235 aa, chain - ## HITS:1 COG:BMEII0281 KEGG:ns NR:ns ## COG: BMEII0281 COG1802 # Protein_GI_number: 17988626 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Brucella melitensis # 4 214 11 218 238 80 34.0 3e-15 MTPLSDPLWGSRATAAGRLAHDVAWRIVRGEITAGEMLTEVQLSTEAGISRTPAREALLQ LERWGLVRLLPKKGAAVQALTPQSVADLTALRGLLESTALATVAARPDAVGPLVATLTAN LEQQRAALDAGDLAAFSALDVRFHRDVIATCGNAAFDEVVRTFAPRLARLIHAATGGSVD AARRLLDGHAEICAQLAAGRAADAQRALQAHLDAAGSGVVPGLPPVGPSEAGEPR >gi|289557843|gb|ADCD01000042.1| GENE 95 102260 - 102448 74 62 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MRARIIGCMHGCMHCVGLGGGPGGEGPKVPAPVEAGLRSGCQPSSVPVRGARGGRDCGRP RP >gi|289557843|gb|ADCD01000042.1| GENE 96 102662 - 103906 230 414 aa, chain - ## HITS:1 COG:SMa2105 KEGG:ns NR:ns ## COG: SMa2105 COG3177 # Protein_GI_number: 16263601 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Sinorhizobium meliloti # 159 260 154 257 406 73 39.0 7e-13 MSNDPRPTPWAVGWEERPWAAGPDDAGLRSRSARVRAAGPYRAALPARIARLGLDLPSDL ATEVEEATAAVVRFDAEISHALPGLTGEIAPIDAVLLRTESASSSQIEHITAGARALALA TLGERTRPNAALVAANVRAMGAASRLAADLEEPALLAAHRALMDGQEHARPGAYRDAQGW IGGGAPTPHTAQFVPPHPERLRAGMDDLFAYLRRTDVPALVQAAIAHAQFETIHPFADGN GRTGRVLVHAVLRRAGAITRMGGAPLRGTPHGHGRILRRPHRLPRRRPRAHRAPLRAGRP GRRRQRPRARRGPGRGPDRLARAAHRPAGRGGLAGARGDHRATRRDRGPSGPGAGCLAPG RPAGRGPACRGRRSAGRVRSASEPGVAGHRGARLSGRVRRACGPAGLTGCGLPG >gi|289557843|gb|ADCD01000042.1| GENE 97 103903 - 104097 145 64 aa, chain - ## HITS:1 COG:no KEGG:Mlut_22990 NR:ns ## KEGG: Mlut_22990 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 40 16 55 55 74 100.0 1e-12 MEKVGLRHEGTFKEESLHRTRGWVDGVTYAMLASEHRARGRRLSTSRRPELRNSLDITLR KVAA >gi|289557843|gb|ADCD01000042.1| GENE 98 104361 - 105503 1984 380 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239918760|ref|YP_002958318.1| acetyltransferase, ribosomal protein N-acetylase [Micrococcus luteus NCTC 2665] # 1 380 1 380 380 768 97 0.0 MDVTFTPLDPAGADRDALVALLTENAWPFHTRPRVTRPEAEKAVDGGAWEDEDHRTFWIE HPEHGRVGVVRLEDLTDPTPLFDLRVVERFRGRGLGAQILTALTRHVFETMPAVDRFEGQ TREDNVPMLRAFRRAGWVKEAHYRRGWPVDGGEPLASVAYAMLRQDWASGTTTPVPADVD APPPAGRKEGAAAGGRAPDWPLPTARLTLRPHREDDLGWLQEMYTQPEVVRHLLDEPWDE ATARAKLAKRITWDDLGGPSGAVSLVVEHAGAPVGDVILWLTDRERGVAEIGWALDPRHA GQGFAREAAAALLDLGFETSGLHRVVAQMDARNTASARLAETLGMRREAHHRQNWWSKGE WTDTLVYAMLASDRGVGGHL >gi|289557843|gb|ADCD01000042.1| GENE 99 105569 - 106018 359 149 aa, chain - ## HITS:1 COG:no KEGG:Mlut_23010 NR:ns ## KEGG: Mlut_23010 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 149 1 149 149 227 98.0 1e-58 MDITVGAVGRASLSDWEQECCGDPIAVGEVHELILLPSRGVSQAGPLASAGWVVTYHDDG SPAGSIPLRRVRAVVRAVHEVWPSGRLAEIDRVPGHADLTILEPEEATGLGLGEVVYVGA YEPVLPETPRPDEWLLDLEILEDLGPHTW >gi|289557843|gb|ADCD01000042.1| GENE 100 105578 - 106429 286 283 aa, chain + ## HITS:1 COG:no KEGG:Mlut_23020 NR:ns ## KEGG: Mlut_23020 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 193 283 1 91 91 149 95.0 8e-35 MRTEILEDLQVEKPLVRAGSLGEHRLVGADIDDLPQAEAGGLLRLQDRQVSVAGDAVDLG EPPRGPHLVYRPHNGPHTTQRDRPGGAAVVVIGDDPACRGQGPSLTHSPGGQQDQLVDFP HGDRVTAAFLLPVRERGAADGADGDVHGRSVGAGPHPGARGASPPVMLGIGLEARRVKSR TTRRHRVHRIDAMTRAGAFTIAGLAAFAVSTGILVLLLITGSETPRETVAFFALIIGCYA LSALCFAAAKRVLLALLSGALAVVSFPLALFIGYVVEMLQSQQ >gi|289557843|gb|ADCD01000042.1| GENE 101 106720 - 108322 1369 534 aa, chain + ## HITS:1 COG:MT3401 KEGG:ns NR:ns ## COG: MT3401 COG0578 # Protein_GI_number: 15842893 # Func_class: C Energy production and conversion # Function: Glycerol-3-phosphate dehydrogenase # Organism: Mycobacterium tuberculosis CDC1551 # 45 534 51 532 585 397 49.0 1e-110 MPTLRTVSLSAATREDHLARLRATSPEAPLDILIVGGGSTGVGAAFDAATRGLDVGIVEA RDWASGTSSRSSRLMHGGLRYLEMLDVKLVYEALRERDLLLTQTAPHLVRPLRFVFPFFH KVIDRGFIGAGVTMYDAMQSLGRRRAMGAHRHLSRRSMAATFPSLDDEKIVGAVEYADAQ FDDARLAMMLVRSAVDHGAVAANYTAVTGYLRGDDGRVQGVRVREETSGEEFDVHARAVI LAGGVWTQEQQELAEADGGLEVLASKGAHITVPRDRIRADAATGVITKTEKSVLFLIPWD EYWVIGTTDTPWAEDVAHPATTADDIDYILEHANAVLKEDLTRDDVVATYAGLRPLLQPV TGSDGGSTKISREHTVTEVAPGLTAVAGGKWTTYRAMAEDVVDFVVRETHPTRPSLTERI PVLGGLGYSEIEAEADRIAADYGLDEARVDRLLFRYGTVLRHVLDLIDADPSLSVPLAEA PRYLRAEIVYAARAEGVVHLDDVIERRTRLSTEVRDRGVAAAEEIASLVAPELG Prediction of potential genes in microbial genomes Time: Thu May 26 07:18:18 2011 Seq name: gi|289557840|gb|ADCD01000043.1| Micrococcus luteus SK58 ctg1119142780217, whole genome shotgun sequence Length of sequence - 1466 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 1457 619 ## COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases Predicted protein(s) >gi|289557840|gb|ADCD01000043.1| GENE 1 2 - 1457 619 485 aa, chain - ## HITS:1 COG:PA3568 KEGG:ns NR:ns ## COG: PA3568 COG0365 # Protein_GI_number: 15598764 # Func_class: I Lipid transport and metabolism # Function: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases # Organism: Pseudomonas aeruginosa # 268 463 3 198 628 210 57.0 7e-54 MSACSAAEAARRAGRRRPVGAGAPGAGAGCAGWRRGRGSRRLVQPAVQLGRHRVVVRGVG PTAQGRLGLLETAREDREPLGRLRGGPLRGPARQEGLEGDAQVEQLVRLLEGQVGDDDAP ARCLLGQAVGHQAGERLAQRGARDAQAFGLLHLAQARARREGPVEDLRPQGLVRPLTRSH AASVYTTVPPRAGGVSGARVGRRRRRGVSSGVTGPGAVPLAGDARAPPCLTRNARDVYRS LAPCDLQHYPGRMATHDAPTEDRPSGAYADAHARSLRDPEGFWLDAARAIDWTVAPTRAL DDSAAPLYRWFPDGELNTAFNCLDRHVEAGRGDAVALIHDSAMTGEVTRYTYAELTDAVA RLAGALAARGVGRGDRVLVYLPMIPQAHIAMLACARLGAVHSVVFGGFAPRELASRIDDA APDVVLTCSGGIEPKRRVEYLPAVAEALETAAHPVRTVLVHHREGFETALADADGRGGAS WEDWG Prediction of potential genes in microbial genomes Time: Thu May 26 07:18:24 2011 Seq name: gi|289557822|gb|ADCD01000044.1| Micrococcus luteus SK58 ctg1119142780292, whole genome shotgun sequence Length of sequence - 16579 bp Number of predicted genes - 16, with homology - 16 Number of transcription units - 7, operones - 5 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 38 - 970 636 ## COG4339 Uncharacterized protein conserved in bacteria 2 1 Op 2 . - CDS 1038 - 1328 275 ## Mlut_04110 hypothetical protein 3 1 Op 3 40/0.000 - CDS 1384 - 3096 1306 ## COG0642 Signal transduction histidine kinase 4 1 Op 4 . - CDS 3200 - 3907 749 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 5 1 Op 5 . - CDS 3986 - 4237 229 ## Mlut_04140 hypothetical protein 6 2 Op 1 . + CDS 4236 - 4832 475 ## COG1278 Cold shock proteins 7 2 Op 2 . + CDS 4836 - 5333 384 ## Mlut_04170 hypothetical protein 8 3 Tu 1 . - CDS 5340 - 6467 950 ## COG1932 Phosphoserine aminotransferase 9 4 Tu 1 . + CDS 6596 - 7318 722 ## COG1321 Mn-dependent transcriptional regulator 10 5 Op 1 . + CDS 7479 - 7973 363 ## COG1403 Restriction endonuclease 11 5 Op 2 . + CDS 8050 - 9918 221 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P - TRNA 9942 - 10018 80.5 # Arg CCT 0 0 12 6 Op 1 . - CDS 10057 - 10812 394 ## Mlut_04250 hypothetical protein 13 6 Op 2 . - CDS 10898 - 12034 811 ## Swit_2951 acyltransferase 3 14 7 Op 1 . + CDS 12337 - 15228 1632 ## COG0210 Superfamily I DNA and RNA helicases 15 7 Op 2 39/0.000 + CDS 15084 - 16253 1010 ## COG0045 Succinyl-CoA synthetase, beta subunit 16 7 Op 3 . + CDS 16281 - 16578 184 ## COG0074 Succinyl-CoA synthetase, alpha subunit Predicted protein(s) >gi|289557822|gb|ADCD01000044.1| GENE 1 38 - 970 636 310 aa, chain - ## HITS:1 COG:all0539 KEGG:ns NR:ns ## COG: all0539 COG4339 # Protein_GI_number: 17228035 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Nostoc sp. PCC 7120 # 95 310 8 211 212 98 31.0 2e-20 MTVLIDPPAWPAHGTVFSHLVSDTSLEELHAFARAAGLSERAFDRDHYDVPAHRRAELVA RGAVPVTGRELVRRLAASGLRVPARSRAEKRDVVLARRWARLFEGTAASPDAVTTAGRDL LARWAEPHRHYHDPAHLLAVLESVDMLERVGAETGPDPRAVRLAAWFHDAVYAGDPTAPA GQDEADSAALARDVLTDPRLAVPADVVDEVARLVLLTAAHDPAPHDAAGAVLSDADLEVL GRSPEAYARYVAAVRRDYAHVSDADWARGRGAVLDALLDAGRLYRTAPGRARWEAAARRN LAAERAALSA >gi|289557822|gb|ADCD01000044.1| GENE 2 1038 - 1328 275 96 aa, chain - ## HITS:1 COG:no KEGG:Mlut_04110 NR:ns ## KEGG: Mlut_04110 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 96 1 96 96 136 98.0 3e-31 MSIVQIDVEDLRAKSGAVESSIGRLQAEVSTMEANLRQLQDTWRGQAAANFQGVLTEWRA TQQRVEESLAGIRRAMDAAATQYQDAETANAAMFRF >gi|289557822|gb|ADCD01000044.1| GENE 3 1384 - 3096 1306 570 aa, chain - ## HITS:1 COG:MT0783 KEGG:ns NR:ns ## COG: MT0783 COG0642 # Protein_GI_number: 15840173 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Mycobacterium tuberculosis CDC1551 # 56 467 74 467 485 234 44.0 4e-61 MIAALMLGLVAVTALATAALFRQEAVRQLDEDMAANRDTVSMYLANVAQTGEYYMPQLPI LRFYGVVWDNEGARVVQTPVMLDADEPALPDLTPAEARERGSASFEVPGTQADSSGWRVQ LYGLSSGDGTMAVALPLQSVTSSVERVTSIVVTIGLLATAGTVIVANLAVQRAFRTLNRV ERTAAKIAAGDLSQRVESAAPDTEVGRLSRSLNAMLAHIESAFRDKEISEDKMRRFVQDA SHELRTPLVTIRGFSELYRHGGLREEEDVAAAMERIESEATRMTRLVEDLLTLARLDEQR PLEHAPVDLLILAMDSLMDASVNAPDRKVTLVGPDDDRAAPAPILGDENRMRQVVVNLVA NALRYTPAGTPIEIAVGTVDHLGGQAGADGAGRSSVIEIRDHGPGVSEEDRARIFERFYR ADTSRHRETGGTGLGLAIVAAIVAQHGGSVRLLETEGGGATFSVHLPWAPFEDETDEADE DVEDERLPARDIDDDAAGPPTGPLALTAPSGAGASAADAARSSRLLRAAERFRRASAERR RRASAPAQAPQADAPSPGEDDPAAERDARP >gi|289557822|gb|ADCD01000044.1| GENE 4 3200 - 3907 749 235 aa, chain - ## HITS:1 COG:MT0782 KEGG:ns NR:ns ## COG: MT0782 COG0745 # Protein_GI_number: 15840172 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Mycobacterium tuberculosis CDC1551 # 6 230 12 237 240 267 61.0 1e-71 MQPQNPEARLLVVDDEPNIRELLSTSLRYAGFEVTAAANGREALDAAEEFQPDLAVLDVM LPDMDGFTVTRRLRAAGRHFPVVFLTARDGTEDKITGLTVGGDDYVTKPFSLDEVVARIR AVLRRTASLDDDAAVLRVDDLELDDDAHEVRRGGEVVELSPTEFKLLRYLMMNPNRVLSK AQILDHVWEYDFNGDASIVESYISYLRRKIDVGGREKMIHTKRGVGYMLRTADKR >gi|289557822|gb|ADCD01000044.1| GENE 5 3986 - 4237 229 83 aa, chain - ## HITS:1 COG:no KEGG:Mlut_04140 NR:ns ## KEGG: Mlut_04140 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 83 1 87 87 71 91.0 8e-12 MPRTSTLPAPAPADHRGGRGVVLVLGVAVTAVSALALVALLVAYFLAWPASPALFALALF GLPVGFGLMLLHVVLGAVRRSRP >gi|289557822|gb|ADCD01000044.1| GENE 6 4236 - 4832 475 198 aa, chain + ## HITS:1 COG:ML2147 KEGG:ns NR:ns ## COG: ML2147 COG1278 # Protein_GI_number: 15828153 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Mycobacterium leprae # 72 198 1 136 136 111 47.0 1e-24 MPATLVGLSWEVIDDHVLRRPLRAHGQAGPTDAAAHRHAGAGPRRPETRARPPPRRRPDA EDPHDEEQVTHMPTGRIKFYDSTKGFGFAQTDEGEEVHVPASALPAGVTELRGGTRVEFG VAEGRRGKQALSLRVLDAAPSVVRNHRPGATEMAVLMEDLITWLDQASNGLRRGRYPQRA QAQKMAQVLRRVADDLEA >gi|289557822|gb|ADCD01000044.1| GENE 7 4836 - 5333 384 165 aa, chain + ## HITS:1 COG:no KEGG:Mlut_04170 NR:ns ## KEGG: Mlut_04170 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 165 1 167 167 204 94.0 8e-52 MTTHDDAPRVDHRSPDAAPAEERTAVPPARRRAPRRDELLAAAVDTARAGLAGLAAPDEV GEHVDVLVDDDRLLTHRFACRLPGYAGWLWYVTIARAPRAKQVTVCETGLMAGEGSLVAP PWVPYAERVNEEERERLKAVAEGRVPGAPAPDAEGDGTPEAAARG >gi|289557822|gb|ADCD01000044.1| GENE 8 5340 - 6467 950 375 aa, chain - ## HITS:1 COG:MT0907 KEGG:ns NR:ns ## COG: MT0907 COG1932 # Protein_GI_number: 15840298 # Func_class: H Coenzyme transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoserine aminotransferase # Organism: Mycobacterium tuberculosis CDC1551 # 7 374 9 376 376 451 63.0 1e-126 MTSPAEITIPQDLLPADGRFGAGPSKVRPEQLSALQDAAGLLGTSHRQKPVKDLVARVRS GVAELFSAPEGYEVILGVGGSTAFWDAAAFSLVRERAQHLSFGEFGSKFAKATDQAPFLA PSDIRTSEPGTRPEPEAVAGVDVYAWPHNETSTGVMAPVVRPAGIDEDALVVVDATSAAG GLPVDVSEADVYYFAPQKNFASDGGLWLALFSPRALARVAEIKESGRWIPAFLDLATAVD NSLKDQTYNTPALATLVMLDAQLRWMNGQGGLDAMTARTADSSSRVYAWAEASSFATPFV ARPEDRSAVICTVDFSDDVDAAAVAQVLRANGVVDVEPYRKLGRNQLRIATFAATEPEDV AALLRCIDHVVERLG >gi|289557822|gb|ADCD01000044.1| GENE 9 6596 - 7318 722 240 aa, chain + ## HITS:1 COG:ML1013 KEGG:ns NR:ns ## COG: ML1013 COG1321 # Protein_GI_number: 15827486 # Func_class: K Transcription # Function: Mn-dependent transcriptional regulator # Organism: Mycobacterium leprae # 1 200 1 200 230 202 58.0 3e-52 MTDLIDTTEMYLRTILELEEEGIPPLRARIVERLEHSGPTVSQTVARMERDGLVHVGMDR RLELTVAGRERAVSVLRKHRLAERLLADVIGLEWELVHEEACRWEHVMSDQVERRLLTLL ENPTETPYGTPIPPRPEQASAEDWSRDMGLAGTRLSEEAATAGRFRVRGLAEGVQTDPDL LAQLAGAGVTPGRVVRAEAARDAGYIRVEGEAEDGAAADGGALELAAATAAHVWVERLDG >gi|289557822|gb|ADCD01000044.1| GENE 10 7479 - 7973 363 164 aa, chain + ## HITS:1 COG:ML1254 KEGG:ns NR:ns ## COG: ML1254 COG1403 # Protein_GI_number: 15827641 # Func_class: V Defense mechanisms # Function: Restriction endonuclease # Organism: Mycobacterium leprae # 2 160 49 210 215 139 48.0 3e-33 MRTLVLNAGYEPLSVVSDRRALLLVATGKASVLEDAGDPMRSPTRAWGRPLVILLHQYIR VPHTDATPVSRKGVLRRDGHRCAYCGAHATTVDHVRPRSRGGENTWENLVACCLRCNGAK ADRSLEALGWRLRVEPVRPRGAQWRIRELERPAEAWRDYLRLAA >gi|289557822|gb|ADCD01000044.1| GENE 11 8050 - 9918 221 622 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 398 606 147 354 398 89 33 1e-17 MSMESAARMSMMRMTHGQSDAQQSLARGTVRRTIAFAGRYRTRLIVFVAASIVGAVLGVA SPVLAGDVVNAITGGADRGLVVRLALLIALVAVLDAALSVFTKWLSSGLGERVIYDLRTA VFDHVQRMPVAFFQRTRTGALVSRLNNDVIGAQSAISRTLSGVVANVVSVALTLGVMVAT SWQVTVLSLVMLPLFLVPARAVGSKLAGLSRERAGHNAAMGDQMTERFSAPGATLIKLFG RPAAESAEFARRADRVRATGVDISVRQAVFTTLLTLVSALALAAVYGVGGLQAIAGTLDA GDVVTLALLLTRLYAPLTALANARVEIMSALVSFERVFEVLDLEPLITEPARPAALPEGP LSVRLRDVRFAYPTAEQVSLASLEEVAVLDTRGGEEVLHGIDVAVPAGATVALVGSSGAG KSTIASLVTRLHDVTSGAVEIGGVDVRDLAFADLQRAVGMVTQDGHLFHETVRANLALAR PDATDEELWDAVERARLRPVVEALPDGLDTVVGERGYRLSGGERQRMTIARLLLAAPRVV VLDEATAALDSTNERAIQEALGEALAGRTAIVIAHRLSTVRSADEILVVEAGRIMERGTH AALLAADGRYAELYTTQFADAE >gi|289557822|gb|ADCD01000044.1| GENE 12 10057 - 10812 394 251 aa, chain - ## HITS:1 COG:no KEGG:Mlut_04250 NR:ns ## KEGG: Mlut_04250 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 36 239 1 211 222 259 81.0 6e-68 MTPISRSKVSWAGRAGRRGAGPARPVWEDGPRRCPVSQKSRKSRPRPSRPAARPVAESPR SRPTLRDVNVREDLSTAAEREGSPAIPVSALIVTTLLVGAYLHLLVLQQMTQLSGGLAMP DSLLFYGQDHIRALSAVMDEDARGQLNWVHKTAGVIFPIAVALTVTAVGAWRLRPAGAKW VVFGLGVLFAVVDICENIAIEQAIAAGGPGAGLAAALTLTRWLLLALLALAVAVLLWAGR RRRRGPAARGA >gi|289557822|gb|ADCD01000044.1| GENE 13 10898 - 12034 811 378 aa, chain - ## HITS:1 COG:no KEGG:Swit_2951 NR:ns ## KEGG: Swit_2951 # Name: not_defined # Def: acyltransferase 3 # Organism: S.wittichii # Pathway: not_defined # 1 296 29 321 333 84 29.0 5e-15 MTWMDAMRGFAVLLVMFTHTYTMPQGLDAAFSSVAFANVAQVFQSWRMPMLMFLSGVLLP RSVSKPLGTYYRGKAERILWPFLVWMVVLALATGGPGSLLSIEFWRGGAWHLWFLWVLML CYLIGPVIRRVPALVVAVVLFVLLLEFVSGPRHWVRPLYWGVYFFLGAASARLLPRIRTS PAALGVIAVILMVLTVTATRAGALVVAERQPWSVFAALPGILVVLWLGPRLPRLPFLEFC GRRSMVLYVAHMPVLILAVAAFRDLAAVRPVDFYVAIASFTFLVPLALALGYRRVRWLFE FPTAGRVRARPRTRASAPEAADTVPARTAEPAPTTAPLSVVEPAPEPQPTAGPAPATEPA ADAPVRVRVPRPRPRHAD >gi|289557822|gb|ADCD01000044.1| GENE 14 12337 - 15228 1632 963 aa, chain + ## HITS:1 COG:Cgl0831 KEGG:ns NR:ns ## COG: Cgl0831 COG0210 # Protein_GI_number: 19552081 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases # Organism: Corynebacterium glutamicum # 58 680 7 639 763 612 55.0 1e-175 MADLFSALGRTPLNLDRTRRPADPETALPGLVPPAVTRVAADPEAWGEDARPAAPAHTPE SLVAGLNPQQAAAVTHTGAPLLIVAGAGSGKTRVLTHRIAWLLATGRARPHEILAITFTN KAAAEMRERVAGLIGPTAQRMWISTFHSSAVRLLRNEAANIGLKSTFTIYDSADSLRLVT TVAKQHELDPKRFAPKALLNRISSLKNELVEADDYAATVAEGDPWGRAVAAVYRGYTARL RQANALDFDDLIGMTVHMFEAFPRVLDNYRRRFRHVLVDEYQDTNHAQYRLIRLLAGPAG DPEGVETPGGELTVVGDSDQSIYAFRGADIRNIVEFEQDFTDAVTIKLEQNYRSTQTILD AANAVIERNPDRRPKRLWTAEGEGPAIVGYAAENESAEAEWIASTIDRLQDEDGIRPADV AVFYRTNAQSRALEERLVTRGIPYRVIGGTRFYDRKEIKDALAYLRVIVNPDDDVNVRRI LNEPKRGIGDRAEGAVAAWAERNRSTFSAALRDAENAPGMAARSLKAVRGFVQMMDDLGQ VAESAGPATVLEAVLEQSGMLAALRESEDLQDESRADNLGELVAVVRSFETTHPDGTLSD FLEQVALVADADQLPTAPDVEGEALAEQQGQVTLMTLHTAKGLEFPVVFLTGMEHGVFPH ARSMTDEKELAEERRRGLRGPDARPPSPVPDARRGTLAVGPAPVQPAQPVPRGDPGGAHR LGAGGHHALGRLVEPDRRRHLALRGAVRGRAAGLAVPGRRRRAAPAPHPRGRAGGPHGAL RRGAGEGAEPGAAAEGDRGAQPGRPRLPRDLRRGARGRRRGRRGQDRRDRHLRRHRGAEA AAAALRPADEGRGLTGPARRPPGLSAVWTRVSRGTPPSAALLCPRARPGHGGGVDVGRAR GRGRQTLSSTKKDTPPWTCMSTRRAICSRRTASPCWPASLRRPRTRPRRPRRRSAASPSS RRR >gi|289557822|gb|ADCD01000044.1| GENE 15 15084 - 16253 1010 389 aa, chain + ## HITS:1 COG:MT0978 KEGG:ns NR:ns ## COG: MT0978 COG0045 # Protein_GI_number: 15840375 # Func_class: C Energy production and conversion # Function: Succinyl-CoA synthetase, beta subunit # Organism: Mycobacterium tuberculosis CDC1551 # 1 387 1 387 387 493 70.0 1e-139 MDLYEYQARDLFEAHGVPVLAGIVAQTPDEAKAAAEKIGGVTVVKAQVKVGGRGKAGGVK VAKTADEAYEHAKAILGMDIKGHTVHQVMIAQGADIAEEYYFSVLLDRANRTYLAMCSVE GGMEIEQLAEERPEALAKVPVSALTGIDAETAQKIVTEAGFPEELRADVAEVIQKLWEVF EKEDATLVEVNPLVKTGDGTILALDGKVSLDDNAQFRHEGHAALVDERTEDPLEAKAKAN DLNYVKLDGQVGVIGNGAGLVMSTLDVVAYAGEQHGGVKPANFLDIGGGANAEVMANGLD VILGDEQVKSVFVNVFGGITACDQVANGIVKALEILGDTATKPLVVRLDGNAVEEGRRIL QEANHPLVTLAATMDEGADKAAELAHSAN >gi|289557822|gb|ADCD01000044.1| GENE 16 16281 - 16578 184 99 aa, chain + ## HITS:1 COG:MT0979 KEGG:ns NR:ns ## COG: MT0979 COG0074 # Protein_GI_number: 15840376 # Func_class: C Energy production and conversion # Function: Succinyl-CoA synthetase, alpha subunit # Organism: Mycobacterium tuberculosis CDC1551 # 1 83 4 86 303 116 74.0 9e-27 MSIYLNKDSKVIVQGITGGEGTKHTRLMLKAGTNIVGGVNARKAGTTVSHEDKDGNAVEL PVFGTVKEAMEKTGADVSVAFVPRPSPRTPPSRHRGEIP Prediction of potential genes in microbial genomes Time: Thu May 26 07:18:43 2011 Seq name: gi|289557820|gb|ADCD01000045.1| Micrococcus luteus SK58 ctg1119142780281, whole genome shotgun sequence Length of sequence - 2890 bp Number of predicted genes - 6, with homology - 6 Number of transcription units - 4, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 28 - 306 525 ## G2583_0294 Superinfection exclusion protein B + Term 418 - 447 -0.2 - Term 44 - 90 1.2 2 2 Tu 1 . - CDS 307 - 708 209 ## BWG_3701 lambda genome from map unit 74 backward to map unit 67 - Prom 894 - 953 4.0 - Term 1065 - 1094 1.1 3 3 Op 1 . - CDS 1095 - 1529 809 ## gi|9626290|ref|NP_040626.1| exclusion protein 4 3 Op 2 . - CDS 1545 - 2012 1007 ## BWG_3702 protein RexA 5 3 Op 3 . - CDS 2036 - 2380 287 ## BWG_3702 protein RexA 6 4 Tu 1 . - CDS 2493 - 2867 384 ## COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases) Predicted protein(s) >gi|289557820|gb|ADCD01000045.1| GENE 1 28 - 306 525 92 aa, chain + ## HITS:1 COG:no KEGG:G2583_0294 NR:ns ## KEGG: G2583_0294 # Name: not_defined # Def: Superinfection exclusion protein B # Organism: E.coli_O55_H7 # Pathway: not_defined # 1 92 69 160 160 186 100.0 3e-46 MQNDKVRSVIQNLTEEQSMVLCAALNEGRKYVVTSKQFPYISELIELGVLNKTFSRWNGK HILFPIEDIYWTELVASYDPYNIEIKPRPISK >gi|289557820|gb|ADCD01000045.1| GENE 2 307 - 708 209 133 aa, chain - ## HITS:1 COG:no KEGG:BWG_3701 NR:ns ## KEGG: BWG_3701 # Name: not_defined # Def: lambda genome from map unit 74 backward to map unit 67 # Organism: E.coli_BW2952 # Pathway: not_defined # 27 133 1 107 107 181 100.0 7e-45 MCQSRGVFVQDYNCHTPPKLTDRRIQMDAQTRRRERRAEKQAQWKAANPLLVGVSAKPVN RPILSLNRKPKSRVESALNPIDLTVLAEYHKQIESNLQRIERKNQRTWYSKPGERGITCS GRQKIKGKSIPLI >gi|289557820|gb|ADCD01000045.1| GENE 3 1095 - 1529 809 144 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|9626290|ref|NP_040626.1| ## NR: gi|9626290|ref|NP_040626.1| exclusion protein [Enterobacteria phage lambda] # 1 144 1 144 144 230 100.0 2e-59 MRNRIMPGVYIVIIPYVIVSICYLLFRHYIPGVSFSAHRDGLGATLSSYAGTMIAILIAA LTFLIGSRTRRLAKIREYGYMTSVVIVYALSFVELGALFFCGLLLLSSISGYMIPTIAIG IASASFIHICILVFQLYNLTREQE >gi|289557820|gb|ADCD01000045.1| GENE 4 1545 - 2012 1007 155 aa, chain - ## HITS:1 COG:no KEGG:BWG_3702 NR:ns ## KEGG: BWG_3702 # Name: not_defined # Def: protein RexA # Organism: E.coli_BW2952 # Pathway: not_defined # 1 155 124 279 279 294 96.0 8e-79 MSLSSGERVQIEPLMRGTTKDDVMHMHFIGRTTVKVEAKLPVFGDILKVLGATDIEGELF DSLDIVIKPNLKGYKKVAKDIIFNPSPQFSDISLRAKDEAGDILTEHYLSEKGHLSAPLN KVTNAEIAEEMAYCYARMKSDILECFKRQVGKVKD >gi|289557820|gb|ADCD01000045.1| GENE 5 2036 - 2380 287 114 aa, chain - ## HITS:1 COG:no KEGG:BWG_3702 NR:ns ## KEGG: BWG_3702 # Name: not_defined # Def: protein RexA # Organism: E.coli_BW2952 # Pathway: not_defined # 1 98 1 98 279 184 94.0 8e-46 MKNGFYATYRSKNKGKDKRSINLSVFLNSLLADNHHLQVGSNYLYIHKIDGKTFLFTKTN DKSLVQKINRSKASVEDIKNSLADDESLGFPSFCLLKATPLVLPELFSGRPHPI >gi|289557820|gb|ADCD01000045.1| GENE 6 2493 - 2867 384 124 aa, chain - ## HITS:1 COG:ECs0274 KEGG:ns NR:ns ## COG: ECs0274 COG1974 # Protein_GI_number: 15829528 # Func_class: K Transcription; T Signal transduction mechanisms # Function: SOS-response transcriptional repressors (RecA-mediated autopeptidases) # Organism: Escherichia coli O157:H7 # 1 124 114 237 237 250 97.0 3e-67 MFSPKLRTFTKGDAERWVSTTKKASDSAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQ AVEPGDFCIARLGGDEFTFKKLIRDSGQVFLQPLNPQYPMIPCNESCSVVGKVIASQWPE ETFG Prediction of potential genes in microbial genomes Time: Thu May 26 07:19:56 2011 Seq name: gi|289557686|gb|ADCD01000046.1| Micrococcus luteus SK58 ctg1119142780306, whole genome shotgun sequence Length of sequence - 146216 bp Number of predicted genes - 135, with homology - 129 Number of transcription units - 53, operones - 29 average op.length - 3.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 429 348 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains 2 2 Tu 1 . + CDS 552 - 1499 815 ## COG2321 Predicted metalloprotease 3 3 Op 1 . - CDS 1608 - 1934 308 ## COG2151 Predicted metal-sulfur cluster biosynthetic enzyme 4 3 Op 2 41/0.000 - CDS 1936 - 2700 792 ## COG0396 ABC-type transport system involved in Fe-S cluster assembly, ATPase component 5 3 Op 3 12/0.000 - CDS 2747 - 3952 1076 ## COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component 6 3 Op 4 3/0.053 - CDS 3987 - 5459 1459 ## COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component 7 3 Op 5 . - CDS 5531 - 6160 401 ## COG2345 Predicted transcriptional regulator - Prom 6223 - 6282 2.0 8 4 Op 1 45/0.000 + CDS 6366 - 7331 332 ## PROTEIN SUPPORTED gi|225084369|ref|YP_002657150.1| ribosomal protein S16 9 4 Op 2 3/0.053 + CDS 7328 - 8104 697 ## COG0842 ABC-type multidrug transport system, permease component 10 5 Tu 1 . + CDS 8228 - 9163 816 ## COG1612 Uncharacterized protein required for cytochrome oxidase assembly 11 6 Op 1 . - CDS 9251 - 10372 978 ## COG0109 Polyprenyltransferase (cytochrome oxidase assembly factor) 12 6 Op 2 . - CDS 10338 - 13907 1788 ## 13 7 Tu 1 . + CDS 13906 - 15507 1318 ## COG0166 Glucose-6-phosphate isomerase 14 8 Op 1 5/0.053 + CDS 15638 - 17059 1246 ## COG0364 Glucose-6-phosphate 1-dehydrogenase 15 8 Op 2 . + CDS 17068 - 17997 688 ## COG3429 Glucose-6-P dehydrogenase subunit 16 9 Op 1 . - CDS 18091 - 18342 103 ## Mlut_11380 protein translocase subunit SecG 17 9 Op 2 13/0.000 - CDS 18424 - 19215 748 ## COG0149 Triosephosphate isomerase 18 9 Op 3 26/0.000 - CDS 19218 - 20465 1039 ## COG0126 3-phosphoglycerate kinase 19 9 Op 4 . - CDS 20574 - 21584 986 ## COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase 20 10 Op 1 . - CDS 21771 - 22493 420 ## PROTEIN SUPPORTED gi|15900660|ref|NP_345264.1| superoxide dismutase, manganese-dependent 21 10 Op 2 12/0.000 - CDS 22547 - 23512 754 ## COG1481 Uncharacterized protein conserved in bacteria 22 10 Op 3 12/0.000 - CDS 23544 - 24590 801 ## COG0391 Uncharacterized conserved protein 23 10 Op 4 5/0.053 - CDS 24587 - 25483 756 ## COG1660 Predicted P-loop-containing kinase 24 10 Op 5 . - CDS 25480 - 27411 1497 ## COG0322 Nuclease subunit of the excinuclease complex 25 10 Op 6 . - CDS 27398 - 28108 553 ## COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase 26 10 Op 7 . - CDS 28110 - 31859 2843 ## COG0178 Excinuclease ATPase subunit 27 10 Op 8 . - CDS 31920 - 32567 414 ## COG4106 Trans-aconitate methyltransferase 28 11 Op 1 . + CDS 32280 - 35519 2398 ## COG4581 Superfamily II RNA helicase 29 11 Op 2 . + CDS 35552 - 37018 1037 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) 30 12 Tu 1 . - CDS 37072 - 38331 1047 ## COG0861 Membrane protein TerC, possibly involved in tellurium resistance 31 13 Tu 1 . + CDS 38140 - 38610 85 ## gi|289705490|ref|ZP_06501882.1| hypothetical protein HMPREF0569_0830 32 14 Op 1 . - CDS 38577 - 39620 992 ## COG0861 Membrane protein TerC, possibly involved in tellurium resistance 33 14 Op 2 . - CDS 39697 - 40461 446 ## Mlut_11210 hypothetical protein 34 14 Op 3 . - CDS 40458 - 41096 487 ## Mlut_11200 hypothetical protein - Term 41135 - 41169 2.1 35 15 Op 1 . - CDS 41173 - 43302 2199 ## COG0556 Helicase subunit of the DNA excision repair complex 36 15 Op 2 . - CDS 43340 - 43987 567 ## COG0237 Dephospho-CoA kinase 37 15 Op 3 . - CDS 43984 - 46353 2098 ## COG1292 Choline-glycine betaine transporter 38 16 Op 1 . + CDS 46508 - 47209 558 ## COG1739 Uncharacterized conserved protein 39 16 Op 2 . + CDS 47202 - 48419 808 ## COG2813 16S RNA G1207 methylase RsmC 40 17 Op 1 . - CDS 48564 - 50021 2434 ## PROTEIN SUPPORTED gi|239917616|ref|YP_002957174.1| SSU ribosomal protein S1P 41 17 Op 2 . - CDS 48564 - 50489 615 ## PROTEIN SUPPORTED gi|32471711|ref|NP_864704.1| 30S ribosomal protein S1 42 17 Op 3 . - CDS 50164 - 51537 973 ## COG4552 Predicted acetyltransferase involved in intracellular survival and related acetyltransferases 43 17 Op 4 . - CDS 51521 - 54334 2485 ## COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains 44 18 Tu 1 . + CDS 54333 - 54923 445 ## COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism 45 19 Op 1 . - CDS 54984 - 55361 318 ## COG1320 Multisubunit Na+/H+ antiporter, MnhG subunit 46 19 Op 2 . - CDS 55375 - 55665 216 ## Mlut_11090 multisubunit Na+/H+ antiporter, MnhF subunit 47 19 Op 3 . - CDS 55662 - 56102 349 ## Mlut_11080 multisubunit Na+/H+ antiporter, MnhE subunit 48 19 Op 4 21/0.000 - CDS 56099 - 57730 1438 ## COG0651 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit 49 19 Op 5 6/0.000 - CDS 57727 - 58182 473 ## COG1006 Multisubunit Na+/H+ antiporter, MnhC subunit 50 19 Op 6 . - CDS 58179 - 61133 2154 ## COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit - TRNA 61087 - 61171 69.3 # Leu CAA 0 0 51 20 Tu 1 . + CDS 61347 - 61943 410 ## COG3707 Response regulator with putative antiterminator output domain + Term 62034 - 62080 5.2 52 21 Op 1 . - CDS 61962 - 63449 1081 ## COG0469 Pyruvate kinase 53 21 Op 2 21/0.000 - CDS 63526 - 64911 1166 ## COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases 54 21 Op 3 . - CDS 64979 - 69631 3977 ## COG0069 Glutamate synthase domain 2 55 22 Op 1 3/0.053 - CDS 69835 - 70818 814 ## COG0682 Prolipoprotein diacylglyceryltransferase 56 22 Op 2 37/0.000 - CDS 70821 - 71618 355 ## PROTEIN SUPPORTED gi|149916131|ref|ZP_01904653.1| 50S ribosomal protein L25/general stress protein Ctc 57 22 Op 3 13/0.000 - CDS 71624 - 72949 1239 ## COG0133 Tryptophan synthase beta chain 58 22 Op 4 . - CDS 72979 - 74151 627 ## COG0134 Indole-3-glycerol phosphate synthase 59 22 Op 5 . - CDS 74231 - 74833 263 ## Mlut_10940 trp region conserved hypothetical membrane protein TIGR02234 60 22 Op 6 . - CDS 74833 - 76383 1328 ## COG0147 Anthranilate/para-aminobenzoate synthases component I 61 22 Op 7 24/0.000 - CDS 76380 - 76760 301 ## COG0139 Phosphoribosyl-AMP cyclohydrolase 62 22 Op 8 . - CDS 76805 - 77575 556 ## COG0107 Imidazoleglycerol-phosphate synthase 63 22 Op 9 3/0.053 - CDS 77622 - 78470 650 ## COG0040 ATP phosphoribosyltransferase 64 22 Op 10 . - CDS 78525 - 78788 210 ## COG0140 Phosphoribosyl-ATP pyrophosphohydrolase 65 22 Op 11 . - CDS 78798 - 79283 90 ## 66 23 Op 1 . - CDS 79643 - 80017 191 ## gi|289705524|ref|ZP_06501916.1| conserved domain protein 67 23 Op 2 . - CDS 80105 - 80383 68 ## gi|289705525|ref|ZP_06501917.1| hypothetical protein HMPREF0569_0865 68 24 Tu 1 . + CDS 80795 - 81289 356 ## PROTEIN SUPPORTED gi|229248337|ref|ZP_04372384.1| acetyltransferase, ribosomal protein N-acetylase + Term 81362 - 81390 -0.2 + Prom 81320 - 81379 1.7 69 25 Op 1 7/0.000 + CDS 81522 - 82943 1010 ## COG1253 Hemolysins and related proteins containing CBS domains 70 25 Op 2 . + CDS 82940 - 83959 503 ## COG1253 Hemolysins and related proteins containing CBS domains 71 26 Tu 1 . - CDS 83681 - 84313 103 ## COG3293 Transposase and inactivated derivatives 72 27 Tu 1 . + CDS 84533 - 84886 179 ## + Term 85134 - 85168 3.7 73 28 Tu 1 . - CDS 85325 - 85690 167 ## COG0640 Predicted transcriptional regulators 74 29 Op 1 3/0.053 + CDS 85752 - 86864 852 ## COG0798 Arsenite efflux pump ACR3 and related permeases 75 29 Op 2 . + CDS 86888 - 87316 278 ## COG0394 Protein-tyrosine-phosphatase 76 29 Op 3 . + CDS 87402 - 88682 684 ## Mlut_20640 predicted flavoprotein involved in K+ transport 77 29 Op 4 3/0.053 + CDS 88781 - 89140 197 ## COG0640 Predicted transcriptional regulators 78 29 Op 5 . + CDS 89137 - 89733 320 ## COG4300 Predicted permease, cadmium resistance protein - Term 89869 - 89916 1.4 79 30 Tu 1 . - CDS 90086 - 90574 90 ## gi|289706328|ref|ZP_06502687.1| conserved hypothetical protein 80 31 Tu 1 . + CDS 90507 - 90722 86 ## + Term 90762 - 90787 -0.5 81 32 Op 1 18/0.000 - CDS 90706 - 91188 369 ## COG0054 Riboflavin synthase beta-chain 82 32 Op 2 15/0.000 - CDS 91185 - 92498 918 ## COG0108 3,4-dihydroxy-2-butanone 4-phosphate synthase 83 32 Op 3 16/0.000 - CDS 92495 - 93151 450 ## COG0307 Riboflavin synthase alpha chain 84 32 Op 4 . - CDS 93152 - 94285 783 ## COG1985 Pyrimidine reductase, riboflavin biosynthesis 85 32 Op 5 . - CDS 94282 - 94986 663 ## COG3201 Nicotinamide mononucleotide transporter 86 33 Op 1 3/0.053 - CDS 95308 - 95979 579 ## COG0036 Pentose-5-phosphate-3-epimerase 87 33 Op 2 20/0.000 - CDS 95996 - 97627 1235 ## COG0144 tRNA and rRNA cytosine-C5-methylases 88 33 Op 3 26/0.000 - CDS 97624 - 98724 794 ## COG0223 Methionyl-tRNA formyltransferase 89 33 Op 4 . - CDS 98721 - 99197 349 ## COG0242 N-formylmethionyl-tRNA deformylase 90 33 Op 5 . - CDS 99293 - 100282 821 ## Mlut_10780 hypothetical protein - Prom 100458 - 100517 75.6 + TRNA 100441 - 100514 87.5 # Gly GCC 0 0 + TRNA 100533 - 100603 63.9 # Cys GCA 0 0 + TRNA 100662 - 100733 81.9 # Val GAC 0 0 + TRNA 100762 - 100838 95.8 # Gly GCC 0 0 - Term 100831 - 100874 10.0 91 34 Tu 1 . - CDS 100936 - 101763 528 ## COG2375 Siderophore-interacting protein 92 35 Op 1 1/0.158 + CDS 101988 - 103583 998 ## COG0076 Glutamate decarboxylase and related PLP-dependent proteins 93 35 Op 2 5/0.053 + CDS 103580 - 104905 1009 ## COG3486 Lysine/ornithine N-monooxygenase 94 35 Op 3 5/0.053 + CDS 104965 - 105555 423 ## PROTEIN SUPPORTED gi|229250974|ref|ZP_04374998.1| acetyltransferase, ribosomal protein N-acetylase 95 35 Op 4 . + CDS 105552 - 107387 1318 ## COG4264 Siderophore synthetase component + Term 107419 - 107470 1.2 96 36 Op 1 . - CDS 107456 - 108550 949 ## COG1485 Predicted ATPase 97 36 Op 2 . - CDS 108552 - 108812 85 ## 98 37 Op 1 2/0.105 + CDS 108735 - 109628 882 ## COG2897 Rhodanese-related sulfurtransferase 99 37 Op 2 . + CDS 109665 - 110123 462 ## COG2166 SufE protein probably involved in Fe-S center assembly 100 37 Op 3 . + CDS 110131 - 110649 219 ## COG2606 Uncharacterized conserved protein 101 38 Op 1 3/0.053 - CDS 110674 - 111285 576 ## COG0558 Phosphatidylglycerophosphate synthase 102 38 Op 2 4/0.053 - CDS 111285 - 111965 562 ## COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases 103 38 Op 3 . - CDS 111962 - 114046 1963 ## COG0441 Threonyl-tRNA synthetase 104 38 Op 4 . - CDS 114090 - 117788 2852 ## COG0587 DNA polymerase III, alpha subunit 105 38 Op 5 . - CDS 117785 - 118111 224 ## Mlut_10650 hypothetical protein 106 39 Op 1 . + CDS 118401 - 119312 554 ## Mlut_10640 hypothetical protein 107 39 Op 2 . + CDS 119312 - 120262 422 ## Mlut_10630 hypothetical protein - Term 120258 - 120309 17.8 108 40 Op 1 . - CDS 120331 - 121032 335 ## Mlut_10610 hypothetical protein 109 40 Op 2 . - CDS 121140 - 121997 602 ## COG2135 Uncharacterized conserved protein 110 40 Op 3 . - CDS 121999 - 122256 89 ## Mlut_10590 hypothetical protein 111 41 Op 1 3/0.053 + CDS 122469 - 123533 972 ## COG1062 Zn-dependent alcohol dehydrogenases, class III 112 41 Op 2 . + CDS 123533 - 124189 543 ## COG0491 Zn-dependent hydrolases, including glyoxylases 113 41 Op 3 . + CDS 124222 - 124842 340 ## Mlut_10560 uridine kinase 114 42 Op 1 . - CDS 124870 - 125565 558 ## COG0095 Lipoate-protein ligase A 115 42 Op 2 . - CDS 125637 - 126503 671 ## Mlut_10540 hypothetical protein 116 42 Op 3 32/0.000 - CDS 126592 - 127191 612 ## COG2011 ABC-type metal ion transport system, permease component 117 42 Op 4 10/0.000 - CDS 127266 - 128360 776 ## COG1135 ABC-type metal ion transport system, ATPase component 118 42 Op 5 . - CDS 128364 - 129269 1043 ## COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen 119 43 Tu 1 . + CDS 128982 - 130064 362 ## 120 44 Op 1 24/0.000 - CDS 129780 - 130763 992 ## COG0208 Ribonucleotide reductase, beta subunit 121 44 Op 2 18/0.000 - CDS 131010 - 133187 2193 ## COG0209 Ribonucleotide reductase, alpha subunit 122 44 Op 3 11/0.000 - CDS 133184 - 133651 359 ## COG1780 Protein involved in ribonucleotide reduction 123 44 Op 4 . - CDS 133663 - 134322 264 ## COG0695 Glutaredoxin and related proteins 124 45 Tu 1 . + CDS 134321 - 134626 244 ## COG2388 Predicted acetyltransferase - Term 134512 - 134547 7.1 125 46 Tu 1 . - CDS 134636 - 135685 726 ## Mlut_10400 hypothetical protein 126 47 Tu 1 . - CDS 135883 - 136953 463 ## Mlut_10390 hypothetical protein 127 48 Tu 1 . - CDS 137076 - 137972 513 ## Mlut_10380 hypothetical protein 128 49 Tu 1 . - CDS 138121 - 139224 965 ## GYMC10_6262 conserved repeat domain protein 129 50 Tu 1 . - CDS 139355 - 140410 611 ## COG0583 Transcriptional regulator 130 51 Tu 1 . + CDS 140409 - 141731 1305 ## COG0160 4-aminobutyrate aminotransferase and related aminotransferases 131 52 Tu 1 . - CDS 141813 - 142109 324 ## Mlut_10350 hypothetical protein 132 53 Op 1 4/0.053 - CDS 142320 - 143705 1291 ## COG1012 NAD-dependent aldehyde dehydrogenases 133 53 Op 2 4/0.053 - CDS 143702 - 144502 599 ## COG0531 Amino acid transporters 134 53 Op 3 . - CDS 144457 - 145362 597 ## COG0531 Amino acid transporters 135 53 Op 4 . - CDS 145389 - 146216 696 ## COG1231 Monoamine oxidase Predicted protein(s) >gi|289557686|gb|ADCD01000046.1| GENE 1 3 - 429 348 142 aa, chain - ## HITS:1 COG:ML1816 KEGG:ns NR:ns ## COG: ML1816 COG0488 # Protein_GI_number: 15827973 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Mycobacterium leprae # 1 137 1 140 545 137 56.0 7e-33 MLTVTDVELRVGARLLMDEVNFRVDKGDKVGLVGRNGAGKTTLTKVLAGGGQPTAGTVTR TGRIGYLPQDPKVEDMDQSGRDRILSARDLDQTIRRMREAEAGMAAVDDAERERAMNRYS RLEAEFEARGGYAAESEPPGSR >gi|289557686|gb|ADCD01000046.1| GENE 2 552 - 1499 815 315 aa, chain + ## HITS:1 COG:MT2651 KEGG:ns NR:ns ## COG: MT2651 COG2321 # Protein_GI_number: 15842113 # Func_class: R General function prediction only # Function: Predicted metalloprotease # Organism: Mycobacterium tuberculosis CDC1551 # 82 313 70 292 293 213 49.0 5e-55 MSFNENVQIDAGRARSGGGGGLGGRGIAIGGGGGLLALLLAIFAPGLAEQLGIDTGGGSV GQSQYQQQTGSGGQGQPLSDEECASGADANQNTDCRVIATTEAADEFWGEYLAQFSDIQW RQPQLTLFQGGVSTGCGSASSATGPFYCPADESMYFDTAFFETLQTDFGAEGGPLAEEYI VAHEYGHHVQQVTGYLQHSKDGTTGPTSGAVRAELQADCFAGMWAGHAASTVDPESGESF LKPISQDQLRQAIDAASAVGDDRIQSTHTGRVDPEAFTHGTSEQRMAWFMRGYQSSQQEP DIRQCDTFRASSLDI >gi|289557686|gb|ADCD01000046.1| GENE 3 1608 - 1934 308 108 aa, chain - ## HITS:1 COG:MT1513 KEGG:ns NR:ns ## COG: MT1513 COG2151 # Protein_GI_number: 15840926 # Func_class: R General function prediction only # Function: Predicted metal-sulfur cluster biosynthetic enzyme # Organism: Mycobacterium tuberculosis CDC1551 # 1 108 1 115 115 122 59.0 2e-28 MTETTNQAPTEDIREALKDVIDPELGVNVVDLGLLYGLHYADDGALLVDMTLTTAACPLT DEIEDQVSRAIGTMVDEWRLNWVWMPPWGPERITEDGRDQMRALGFNI >gi|289557686|gb|ADCD01000046.1| GENE 4 1936 - 2700 792 254 aa, chain - ## HITS:1 COG:MT1510 KEGG:ns NR:ns ## COG: MT1510 COG0396 # Protein_GI_number: 15840923 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, ATPase component # Organism: Mycobacterium tuberculosis CDC1551 # 1 252 1 255 266 337 67.0 2e-92 MATLQITDLHVQIATENGPKEILKGLSLTIETGETHAIMGPNGSGKSTLASTIAGHPRYE VTSGSITLDGEDVLEMSVDERAQAGLFLAMQYPVEIPGVTMTNFLRTAKTALDGQAPSLR TWTKDVKGAFEALQIDPAFMNRNVNEGFSGGEKKRAEILQLELFKPKFAILDETDSGLDV DALRNVSEGVNRAQAQNEMGTLLITHYTRILNYIKPDHVHVLVDGRVAESGGPELAEQLE AEGYARFEKAAAGA >gi|289557686|gb|ADCD01000046.1| GENE 5 2747 - 3952 1076 401 aa, chain - ## HITS:1 COG:MT1509 KEGG:ns NR:ns ## COG: MT1509 COG0719 # Protein_GI_number: 15840922 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, permease component # Organism: Mycobacterium tuberculosis CDC1551 # 30 400 14 389 397 352 54.0 1e-96 MIPGMGEEGEKLTVAQNPAARAGGRERNAAGSRADRLSSFELSDFPVLTGREEDWRFTPL KRLGGLHLPEGDDARLTGAAPAVTVAEQAGVTVETVARDDARVGSVLTPDDRVSAAAWNS VSEATVVTISGEVAEPVRIDVVGSSADPAAMHLTVLVEENAQADVVIAHRGTAVLAQNVE FDVRRDARLNVVALQAWEGDAVHVSAQQASVATNAHFKHVAVSYGGGVVRLTPTARFAAE RGEAEMYGLYFADAGQHLENRLFVDHNQPDCVSNVLYKGALQGTDARTVWVGDVLIRKEA EGTDTYEKNQNLLLSDGARADSVPNLEIETGVIEGAGHASATGRFDETQLFYLMARGISE TEARRLIVRGFLNEIIQKIGIGDVEDELTAVMEDELRIAQL >gi|289557686|gb|ADCD01000046.1| GENE 6 3987 - 5459 1459 490 aa, chain - ## HITS:1 COG:Cgl1527 KEGG:ns NR:ns ## COG: Cgl1527 COG0719 # Protein_GI_number: 19552777 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, permease component # Organism: Corynebacterium glutamicum # 10 490 2 481 481 778 78.0 0 MTDQIVQRDSTETADPGVIQEILDKNPELNAIGAYQYGWADSDAAGEKAVRGLNEDVVRD ISGKKDEPEWMRDLRLKALKYFERKPMPAWGPDLSGIDFDNIKYFVRSTEGQAKTWEDLP EDIRNTYERLGIPEAERERLVAGVAAQYESEVVYHQIREDLEEQGVVFLDTDTALKEHPE IFEEYFGTVIPVGDNKFASLNTAVWSGGSFVYVPKGVHVEIPLQAYFRINTENMGQFERT LIIADEDSYVHYIEGCTAPIYQSDSLHSAVVEIVVKKNARVRYTTIQNWSTNVYNLVTKR AVVEAGGTMEWIDGNIGSKVTMKYPAVYLTGEHATGETLSVAFAGKDQHQDTGSKMVHMA PHTNSSIVSKSVARSGGRAAYRGLVQIAEGANGSANSVVCDALLVDTVSRSDTYPYIDIR EDDVTLGHEATVSKVSEEQLFYLMSRGMSEDEAMAMIVRGFIEPIARELPMEYALELNKL IELQMEGSVG >gi|289557686|gb|ADCD01000046.1| GENE 7 5531 - 6160 401 209 aa, chain - ## HITS:1 COG:MT1507 KEGG:ns NR:ns ## COG: MT1507 COG2345 # Protein_GI_number: 15840920 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Mycobacterium tuberculosis CDC1551 # 1 204 57 258 278 103 36.0 2e-22 MLQLVLTRGPVSAAEIGRELELTAAAVRRHLDALEEDSLVEVKRVTAARGAGRPSRRYVV TSHAQEHLPKDHLAVALDTLARLEELGGEEEVRRAARHAFREIEERFTAAVGGRETALQE RTRILARVLDEAGYAGTLRHFGAGLAPTLRADQICQGHCPFQGIPARHPEFCEEETALFA RLLEVDVRRLSTLAAGAHVCTTHVPLGRD >gi|289557686|gb|ADCD01000046.1| GENE 8 6366 - 7331 332 321 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225084369|ref|YP_002657150.1| ribosomal protein S16 [gamma proteobacterium NOR51-B] # 16 315 7 300 309 132 31 9e-30 MPRPPLTPDPVPRDEPVLRLSDVHRSLGRGRSRTPVLRGVDLTARAGAVTVLLGPNGAGK STTLGLCHGMDRPDAGTVRVFGADPWRASADLRARIGVMWQEGGLPPAIPARRFIGHVAS LYRDPLPVEPLLERLLIADVAGRPLRRLSGGQRQRVALAAALVGRPDMLFLDEPTAGLDP ETRPVVHDVVREQTDRGAAVLLTTHLLDDAERLADDVAILRAGRVVRSGPLAELTRVAEG DVVDVDFGDASPDAVRAWADTLPAPLRAAGLDESARLRVAGVRGPDDLAVLAASWREHAL MPTRFERAGLRLEQILRETAA >gi|289557686|gb|ADCD01000046.1| GENE 9 7328 - 8104 697 258 aa, chain + ## HITS:1 COG:MT1504 KEGG:ns NR:ns ## COG: MT1504 COG0842 # Protein_GI_number: 15840917 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Mycobacterium tuberculosis CDC1551 # 30 256 30 260 261 114 44.0 2e-25 MSTPVVDHRAPAGTGAHAGAAPLAARVLRQAGYETGTALRNGEQLLVTVVLPLLALVGVH VTGLLDAPGRSGLDVAVPGVLALAVISSAFTATAIATGFERRYDVLAALATTPLGTLGLV AGKALAVVALLLVQVSVIGGVGLALGWRPDPEGILPALAALALGAAAFTALGLLLAGTAR PEATLAVANLLWVLFGAVGGTVFPARVPGVDLLPSGALGTALRAALLDGDWSPVPLLVLT LWGAMAVAAALRWFRWRP >gi|289557686|gb|ADCD01000046.1| GENE 10 8228 - 9163 816 311 aa, chain + ## HITS:1 COG:Cgl1532 KEGG:ns NR:ns ## COG: Cgl1532 COG1612 # Protein_GI_number: 19552782 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Uncharacterized protein required for cytochrome oxidase assembly # Organism: Corynebacterium glutamicum # 3 283 30 307 346 95 33.0 2e-19 MALAVASLASEIGIIVTGGAVRLTGSGLGCPTWPKCSPESLTNTPEMGIHGYIEFGNRTL TFVLVVIAAAMFLSLWNLRGTHRSPFWLSVGLLAGIPAQALVGGVVVLTHLNPWWVAGHF IVSSIMVAVATLLVVRIAAERRAGRAGVPLVDGATTGRSRAAAWAAFALTWAAVYLGTVV TGTGPHSGDPGSPRHEFDPLLVTRVHVVPVYLLLAAALVLFFTVRRAAGASRLQRAAVLR LLLALVFQAAVGYTQHFTGLPIGVVLLHMLGSALLVAAATETWDRQVARYVTAGPGAAVE AAAPTRTVAAG >gi|289557686|gb|ADCD01000046.1| GENE 11 9251 - 10372 978 373 aa, chain - ## HITS:1 COG:MT1498 KEGG:ns NR:ns ## COG: MT1498 COG0109 # Protein_GI_number: 15840911 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Polyprenyltransferase (cytochrome oxidase assembly factor) # Organism: Mycobacterium tuberculosis CDC1551 # 80 370 22 308 308 261 50.0 2e-69 MTWFAPGRTAVDTSRLGQGLPAGGPPEWPIRTPGRARPPSPHREKQMSSSLESPSAARVA AAEPGVVDRSPLPLRRKVRAYVELTKPRVIELLLVTTLPTMIFAQRGFPDVLTMIATLVG GALAAGASGTFNCYIDRDIDRVMKRTENRPLVTGEVTPRGALVFAWVQTVVSILILGFGA NWLAAGLGVAAIFFYVVVYSLVLKRRTEQNIVWGGIAGCFPVLIGWAAVRGTVEWPAIVL FLVVFLWTPPHYWPLSMKYKRDYQQADVPMLGAIASARHVSNQVVLYAWATVACSLLLVP MGWAGIVYTAVALVVGGWFIWESHVLQVQAQREDFEDRKAMKVFHLSITYLTLLFIALAV DPFVGAPLMHFGA >gi|289557686|gb|ADCD01000046.1| GENE 12 10338 - 13907 1788 1189 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGGPSVRVASGRRGRGRVRSAVGVEPGADRAEQLVPRGLELLQALSLQHVHDVLVGHARR TDRVEQGVGVGIGARDGVRRDHPVIGDRLEGLLRQGGHGVRCHEFGDVQRVRQGGVLDAG GGPQGPLHGGAGRLEQAPALRVQGLLEGAVGQARVGDGGPAGQRLGLGGADRAQPRVDLR VHTGDEEGGHRVEAADVVPVRPGLLQAGEPGVEHPAVAGQREDQGHVHADALAEHVRDGG QALHGRGDLHHEVGPVDGRRQLAGLGHGAGGVAGQARIDLEGDEPVRPAGALVDGREHVG GAAHVLRRQGDDGLVHRGAGRGEFAQLSLVGTRVREGDREDGRVRGDAGDRAGGDQLFER ALVQPRAGEVVEPDRHTGLGQRGGVRVLRGAHGLRVPSLRGWTCSGRRGRRASEEAAGHL GDVLAGESVLLHQAGAVGGLAVVLEAHAGARGGGRHRVLEPRHRDAGLDGDADRGVGAVG QDLGPVGLLLLGEPLEARGGDDAGRDAVGLQQRAGPHGHGDLGAGRDQQRARRRRRAVGI RGVDEDVGAAGHARGGGEAVRVPGEHGQALPGQDESGRAVPVLEHRPPRPRGLVRVGRAD DVEPGDGPQRGQVLHRLVRGAVLAEADRVVRPHVRARGAHEGGQADGGAHVVGERQEGAH VRAGQAADRDAVDDRPGRELADAEVQGAAVLVALPRGGGAAGRDEGGLALHGRVVRPGEV GRAAPELGHDRREGREHLTRGRARGQALLVRVPGRERVREAGGQLSSGQSVVQARVLRVR LAPGLERRLPAAAVLGRALGDGPGAGQELGVDVEGPGRVQPEALLEAGDLVRAELGAVDA AGVLLRGGGPADHGAQLDQRGPAGLGLGRHEGVVQGLHVLRVLGHGVALGAVGPVDLLHV PAVGLVAARHVLGERDVRVVLDRDAVRVVDDHQVPELLVPGQRGGLGGDALLDVPVGGED EHVVVERGGAGGGVGVHQPAHAALLVREADAHRQALAQRTRGHLDAVGVAVLRVARGPGA LGAQRLDVLDLEPGARGEQLQVLDERGVARGEDEAVPALPAVVRRVQVHDVLVQLPRHGG QRDRGAGVAVPGLLHGVRRERLERVHHPAVLLRVDEPAGRGHPVQGRGGGRLRGVGHGFS PGGSGASGRGPGRRRGVAAWGRRPSLAARRRGGPDRAPHDMVRPRANSR >gi|289557686|gb|ADCD01000046.1| GENE 13 13906 - 15507 1318 533 aa, chain + ## HITS:1 COG:Cj1535c KEGG:ns NR:ns ## COG: Cj1535c COG0166 # Protein_GI_number: 15792843 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose-6-phosphate isomerase # Organism: Campylobacter jejuni # 52 369 32 405 406 94 26.0 4e-19 MSTLGLTATGAALEAIDRHLPALLQDRVASRLGAQDADLWGAPARDEAAKRLGWIDLFED SRALVPHIAQLTRELRAEGVDRVVLAGMGGSSLAPEVIAATAGVELEVLDSTDPLQVSRA LERDLERTVLVVSSKSGSTVETDSQRRVVEAAFRDAGIDPRTRLVAVTDPGSPLHAACES AGWRAVFTADPTVGGRFSALAAFGLVPTGLAGVDVAALLDDAEAVLDLLTADDEDNPGLQ LGAALGGTQPLRDKLVFADHGSGIAGLPAWIEQLIAESTGKDGTGLLPVVVAPGDPETAW DAPDLLQVQLVGEDDVAAPGHGVQVAGSLGAQLLLWEVATAVAGRLLGINPFDQPDVEAA KAAARTLLDGPAAERTADGEVEGVEVSGPASVTSAPDLAGVLRATAALVPEDGYLAVHAY LSRHDDAELEGLRADLADLVGRPVTFGWGPRFLHSTGQFHKGGPAVGVFLQITGDAGLDL EVPGRPFSLGRLIAAQAAGDARVLGDLDRPVVTLHLRRRDAGIEALRSAVRGR >gi|289557686|gb|ADCD01000046.1| GENE 14 15638 - 17059 1246 473 aa, chain + ## HITS:1 COG:MT1494 KEGG:ns NR:ns ## COG: MT1494 COG0364 # Protein_GI_number: 15840906 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose-6-phosphate 1-dehydrogenase # Organism: Mycobacterium tuberculosis CDC1551 # 1 473 49 514 514 601 64.0 1e-171 MYDLAQRGLLPPAFSLVGFGRRDWSDEEFADYVRAAVEASSRTTFDETVWDQFRGGLRFV SGAFDDEAAYVRLDEVLAELETSRGTRGNTAFYLSIPPDWFEAVSRHLADQGLADRSQPA EGPWRRVVIEKPFGHDLASAQELNAVIERVFPSDAVFRIDHYLGKETVQNILAFRFANRM FEPLWNAEHVDHVQITMAEDIGIGGRASYYDGVGAARDVIQNHLLQLLAFTAMEEPISFD ADHLRAEKEKVLEAVTVPDTPEGLAAASARGQYTSGWQGGERVTGFLDEEGFNPASVTET YAALKVGIRTRRWQGVPFYLRAGKRLGRRVTEIAVVFKKPPHLLFPVHDGDEFGQNVIVI RVQPDEGVTIRFASKVPGTQAEIRDVTMDFGYGHAFTEDSPEAYERLILDVLLGEPPLFP RQAEVELSWRIVDPFEEHWASLGTQPEPYAPGTWGPPSADALMARDGRSWRRP >gi|289557686|gb|ADCD01000046.1| GENE 15 17068 - 17997 688 309 aa, chain + ## HITS:1 COG:Rv1446c KEGG:ns NR:ns ## COG: Rv1446c COG3429 # Protein_GI_number: 15608584 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose-6-P dehydrogenase subunit # Organism: Mycobacterium tuberculosis H37Rv # 1 292 5 294 303 205 44.0 9e-53 MQDTTTSQVAKRITQLREKSGVVTLGRVLTLVISTDDAGIESAVQAANAASLEHPCRIIV LALGDPAAPTRLDAEIRVGGDAGASDVVVLWCAGENAHADESLVSGLLLPDAPIVAWWPG VPPEVPSATPLGRLAHRRITDTASAATAEPALWALRAGHHEGDTDLAWTRLTLWRIQVAG IFDTLDVATLRSVTVDGAPDSPSTMLLAAWLTLALKVPVTIAHSKAGHGIRAVRLRCTDG DVVLSRSHSQVARLYQQGRPVQRISLPRRTNQDCLAEELRRLDPDEVFGAVLHRGLPRTD LSPVQASER >gi|289557686|gb|ADCD01000046.1| GENE 16 18091 - 18342 103 83 aa, chain - ## HITS:1 COG:no KEGG:Mlut_11380 NR:ns ## KEGG: Mlut_11380 # Name: not_defined # Def: protein translocase subunit SecG # Organism: M.luteus # Pathway: Protein export [PATH:mlu03060]; Bacterial secretion system [PATH:mlu03070] # 1 83 1 83 83 94 97.0 1e-18 MDVLTLALQILVAVLSVVIVLLILLHKGRGGGVSDMFGGGVTTSMSSSGSAQRLLTRLTV GSVVAWGVVIALLGVLPRLTLES >gi|289557686|gb|ADCD01000046.1| GENE 17 18424 - 19215 748 263 aa, chain - ## HITS:1 COG:MT1482 KEGG:ns NR:ns ## COG: MT1482 COG0149 # Protein_GI_number: 15840896 # Func_class: G Carbohydrate transport and metabolism # Function: Triosephosphate isomerase # Organism: Mycobacterium tuberculosis CDC1551 # 6 257 2 251 261 290 63.0 1e-78 MAEQTTRVPLIAGNWKMNLDHLEAVTLVQRLTWLLTDADHDQEAVEVAVFPPFTDLRSVQ TLVTGDRLDLAYGAQDLSPEDAGAYTGDVSGAFLAALGCRYAIVGHSERRTLHGEDDALV ARKAAAALRHGLTPVICVGEGLEVRQAGRHVEHTLAQLEGSIAGLSAQDVAGVVVAYEPV WAIGTGEVAGPEDAQQMGAALRARVAALHGDDVAAGLRILYGGSVKSSSAPALLAQPDVD GALVGGASLDADEFAKIVRFDQA >gi|289557686|gb|ADCD01000046.1| GENE 18 19218 - 20465 1039 415 aa, chain - ## HITS:1 COG:Cgl1549 KEGG:ns NR:ns ## COG: Cgl1549 COG0126 # Protein_GI_number: 19552799 # Func_class: G Carbohydrate transport and metabolism # Function: 3-phosphoglycerate kinase # Organism: Corynebacterium glutamicum # 1 410 1 404 405 420 58.0 1e-117 MPASTLNDLLEAGVAGRTVLIRSDLNVPLDGDTVTDDGRIRASLPAIRDLAEAGARVIVM AHLGRPKGEPDPAYSLRPVAARMAELLGTDVALAADVTGDDARAQAAALQDGQVLLLENV RFDARETSKDDAERAALAGEMAALAGEDGAYVGDAFGAVHRKHASVFDVAAQLPAYQGPL VAAELEVLTRLTESPERPYVVVLGGSKVSDKLAVIDNLLDKADTLLIGGGMLFTFLKAQG HEVGASLLEEDQLDTVREYLRRSEAGAARIVLPTDIVMASGFAADAEHEVLAVDALTSGA HGASAMGLDIGPETARAFAEQIRGAQTVFWNGPMGVFEFPAFAEGTRAVAQALTEASAAG GLSVVGGGDSAAAVRTLGFADDAFGHISTGGGASLEYLEGKELPGVTALAGEGRA >gi|289557686|gb|ADCD01000046.1| GENE 19 20574 - 21584 986 336 aa, chain - ## HITS:1 COG:MT1480 KEGG:ns NR:ns ## COG: MT1480 COG0057 # Protein_GI_number: 15840894 # Func_class: G Carbohydrate transport and metabolism # Function: Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase # Organism: Mycobacterium tuberculosis CDC1551 # 3 336 4 339 339 366 57.0 1e-101 MTKIAINGYGRIGRNIVRVLKDRGHENLELVAVNDLADPEDLFWLTKYDTILGRYPGELE RTEKGFRIDGRDVAFFQEADPTKLPWGELGVDLVIECTGIFTTGPKARAHLDAGAKKVLI SAPAKEVDGTFVMGVNEHTYDAETMHIVSNASCTTNCLAPMAKVLNDEFGIVDGIMTTIH AYTSDQNLHDNVHKKDRRRARAAAQNMVPTSTGAAKAIGEVIPELKGKLDGFAMRVPTIT GSATDLTVELTRHVEVEEINAAFKKAAESGPLQGRLVYSEDPIVSSDIITSPAACTFDAP LTKSIGQTVKIIGWYDNEYGYTSQLMDFADLIGSKL >gi|289557686|gb|ADCD01000046.1| GENE 20 21771 - 22493 420 240 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15900660|ref|NP_345264.1| superoxide dismutase, manganese-dependent [Streptococcus pneumoniae TIGR4] # 38 230 5 201 201 166 45 6e-40 MGTYGIRRRDAGLPEVEAAGVPPAASPDQGGSMTEYTLPELDYDYAALEPHISARIMELH HSKHHATYVKGANTALEKLAAAREAGDFGSVNQLSKDLAFNLGGHTNHSIFWKNLSPEGG DKPTGELAAAIDEYFGSFDKFQAHFTAAALGIQGSGWAVLAYEPIGGNLVIEQFYDQQNG VPVATIPLFQLDMWEHAFYLDYQNVKADYVKAIWNIVNWADVQARFEAARTGASGLILPA >gi|289557686|gb|ADCD01000046.1| GENE 21 22547 - 23512 754 321 aa, chain - ## HITS:1 COG:MT1466 KEGG:ns NR:ns ## COG: MT1466 COG1481 # Protein_GI_number: 15840880 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Mycobacterium tuberculosis CDC1551 # 1 317 1 317 327 316 68.0 3e-86 MALTMTLKEELARVPVAATPERRAETAAMLRFAGGLHLVAGRVVVEAELDHGASARRLRA AITELYGLAPEIVVVSGGNLRRGQRYVLRVVRGGEDLARQTGLIDQRGRPVRGLAPVLVS GTTAATAAVWRGALLAHGSLTEPGRSAALEVTTPGPEAALALVGAARRLHVAAKAREVRQ SDRVVVRDGEAIATLLAAVGAVQTATLWRERRERKEVRATANRLANFDDANLRRSAQAAV MAGAKVERALEILGDEVPDHLRYAGRLRLEHKQASLDELGRLADPPMTKDAVAGRIRRLL AMADKRAAERGIPGTDAASEG >gi|289557686|gb|ADCD01000046.1| GENE 22 23544 - 24590 801 348 aa, chain - ## HITS:1 COG:ML0564 KEGG:ns NR:ns ## COG: ML0564 COG0391 # Protein_GI_number: 15827215 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Mycobacterium leprae # 33 343 10 313 359 218 46.0 2e-56 MTSPLTGQLPLPPGMGSEGRGVGAGMSRPTARVTALGGGHGLSASLAALRHVAGHLTAVV TVADDGGSSGTIRREMAVLPPGDLRMALAALCDDTDWGRTWAHVMQHRFRSTEVPADQAT LDNHALGNLLIVALWELLGDPVDGLRWAGALLRAHGEVLPVSRVPLTIGGDVLSAGPDGR LRTRCVEGQVALAVAAFEGRVTDVRLSPSDAPATPEALSAIELADWVVLGPGSLYTSVLP HLLMPEVRSALAATTARRLMVLNLRTGDQETTGLAHADHLKVLRSYAPDLRLDVVIADVD AVTDRAAVEAEAARMGARVAFSRVSSAQDPQVHDPLRLAVAIDEAMTH >gi|289557686|gb|ADCD01000046.1| GENE 23 24587 - 25483 756 298 aa, chain - ## HITS:1 COG:MT1464 KEGG:ns NR:ns ## COG: MT1464 COG1660 # Protein_GI_number: 15840878 # Func_class: R General function prediction only # Function: Predicted P-loop-containing kinase # Organism: Mycobacterium tuberculosis CDC1551 # 15 298 18 301 301 271 48.0 1e-72 MTEETLQPEKPPTSEVLVIAGMSGAGRTTAAHALEDHGWDVVENMPPALFGTLAELIARS PEAFPRLAIVVDVRSRSYFEELHAALQHLANSGVEYRTVFLDADDHVLLRRFEAGRRPHP MQGNARLLDGIRAERDVVEPLKARADVVVDTTELNVHGLATEITELFTESGPVTLRLTIM SFGFKYGVPADANFVADMRFIPNPHWVPALRPHTGTEAAVADYVLSRPGVEDFLRRYVAM LGPVFEGYRRENKHYATLAIGCTGGKHRSVAVAEELARRLAQVPHVTVHVQHRDMGRE >gi|289557686|gb|ADCD01000046.1| GENE 24 25480 - 27411 1497 643 aa, chain - ## HITS:1 COG:MT1463 KEGG:ns NR:ns ## COG: MT1463 COG0322 # Protein_GI_number: 15840877 # Func_class: L Replication, recombination and repair # Function: Nuclease subunit of the excinuclease complex # Organism: Mycobacterium tuberculosis CDC1551 # 5 636 3 641 646 699 58.0 0 MPVADPASYRPAPGEISTSPGVYRFRDADGRVVYVGKAKNLRARLNSYFQDPARLATKTR TMVFTAAAVEWTVVGSELEALQLEYTWIKEYRPRFNIMYRDDKSYPYLAVTMNEQFPRVQ VMRGDRKPGVKYFGPFHPAKAIRETVDLMLRVFPVRTCSAGVFKRARAQDRPCLLGYIGK CSAPCVGRISPADHRALAQDFCDFMAGDANRFIGELEKAMARAVEELRYEDAARLRDDIA ALRRVFERNAVVLPENTEADIFALHADELEVAVQVFHVRQGRIRGQRGWVMERVEDVAEP EMVAHLLQQVYGDLEGSERIPHEILVPVEPDDAAQLTEWLSGLRGSRVAVRVPRRGSKAD LMETVRENAEMALKLHKSRRSGDLTTRSAALRELQEALEITEPLLRIECYDISHSQGTNV VGSMVVMEDGLPKKKDYRRFNVTGEAARDDTASLRDVLRRRFARLAKERAEGAPLSGQVE GDDQESGRRFAYPPSLVVVDGGPPQVAAAAAVLEELGLDDLPVVGLAKRLEEVWLPGDEF PVVLPRTSEGLYLLQRIRDESHRFAIAGHRSRRSKAMTVSALDGIPGLGPAKRTALLNHF GSVAEIRAAGVDRLTEVAGIGPRLAEAVHTALTADTPADTVEP >gi|289557686|gb|ADCD01000046.1| GENE 25 27398 - 28108 553 236 aa, chain - ## HITS:1 COG:MT2237 KEGG:ns NR:ns ## COG: MT2237 COG0204 # Protein_GI_number: 15841672 # Func_class: I Lipid transport and metabolism # Function: 1-acyl-sn-glycerol-3-phosphate acyltransferase # Organism: Mycobacterium tuberculosis CDC1551 # 24 231 11 219 247 160 44.0 2e-39 MDPAHAGRGRRSAMATSEPVRRSVAALLRLTCRPEVVGMEHVPARGPFVMASNHLSFFDS VILQALAPRPVHFFAKEEYFTGTGLRGRARRRFFESVGSVPVRRGEQAASVAALESLVGL LESGQGVGIYPEGTRSRDGRLYRGRTGAAWLALATGAPVVPVGLVGTQHLQPPDTNGFCP HRFSVRVGAPLDFGHPGRRHTLPQRRDATAAIMDAIGALSGQERVDAYNAAPGARG >gi|289557686|gb|ADCD01000046.1| GENE 26 28110 - 31859 2843 1249 aa, chain - ## HITS:1 COG:ML1392 KEGG:ns NR:ns ## COG: ML1392 COG0178 # Protein_GI_number: 15827727 # Func_class: L Replication, recombination and repair # Function: Excinuclease ATPase subunit # Organism: Mycobacterium leprae # 288 1249 3 952 969 1323 69.0 0 MGALGAQGRGGAVAGVDHHVVVERVEDPFRDVREQLTEPAVVALGVAHPAREEGVAGEEH GRLVRLGAAHQRDRPRRVAAQGHHLEPEPVRPHDVPVAQAHVGGDPRVLGDRVGVVLAGR GAGPGQGRQRRQRPHVVPVSVRGDDHLEARLARGVARGRGDEVADGLGLGGGVDQHLRPR GLGGEQVHVVVHLRHGAGAHRDGGQIVQEAVPGGLGHAQQCTDGSATRQGGPGRRSVRPQ ARPRCRVRARPYAGRVPKNSSTTVSSAVETHAGGLASGPGGARSGERDRIVVQGAREHNL KDVDVSFPRDAMVVFTGLSGSGKSSLAFDTIFAEGQRRYVESLSSYARMFLGRVDKPDVD FIEGLSPAVSIDQKSTNRNPRSTVGTITEIYDYMRLLWARVGVPHCPQCGEPVSRQTPQQ IVDQLEELPERTRFQVLAPVVRGRKGEFVDLFKDLSTQGFARAVVDGEAVQLSDPPVLKK QVKHTIAVVVDRLAMKEGIRQRLTDSVETALKLADGLVVAEFVDVEPVAEKGKKNTAEFG GRDAEGNPRYRSFSEKLSCPNGHEQTVDEIEPRSFSFNNPFGACPECTGIGSRLQVDPDL VVANDELSLREGAVVPWSLGKSTSDYWLRVLGGLGKEMGFSLDTPWKELTEAERDAVLHG KDFKVEVTFRNRFGRERRYTTGFEGVIPYVMRKHGETESDGARERYESFMREIPCPACHG ARLNPTVLNVLVGGLSIADATRLPMREAMEFFSGLRLTDRERQIADQVLKEILARLAFLL DVGLEYLNLERPAGTLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETL LRLRDLGNTLIVVEHDEDTIAEADWIVDIGPRAGEHGGEVVHSGSLADLKANTRSVTGDY LSGRRSIAVPERRRVPEKGRVLTVRGAQENNLKDVSVEVPLGVLTAVTGVSGSGKSTLIN EILYKVLANRLNGAKLVPGRHRSVEGLEHLDKVVHVDQSPIGRTPRSNPATYTGVFDAIR KLFAETPEAKVRGYQQGRFSFNIKGGRCEACAGDGTLKIEMNFLPDVYVPCEVCHGARYN RETLEVTYKGKNIAEVLDMPIEEAADFFSAYTRISRYLDTLVDVGLGYVRLGQPATTLSG GEAQRVKLAAELQKRSNGRTIYVLDEPTTGLHFDDIRKLLHVLQSLVDKGNTVLTIEHNL DVIKSADHVIDLGPEGGSGGGTIVATGTPEEVARVAESHTGRFLAELLA >gi|289557686|gb|ADCD01000046.1| GENE 27 31920 - 32567 414 215 aa, chain - ## HITS:1 COG:MT0307 KEGG:ns NR:ns ## COG: MT0307 COG4106 # Protein_GI_number: 15839680 # Func_class: R General function prediction only # Function: Trans-aconitate methyltransferase # Organism: Mycobacterium tuberculosis CDC1551 # 24 212 80 252 261 115 39.0 5e-26 MLERAREQAARTGAPANLRFEAVDASQWRPSRATDVVVSNAMLQWIPTHRRLIRRWLGDL TPGAWFAAQIPRPYEQPSHAAIVALAEDPAFSEPLHGVATTRTVAPPEEYTRLFLEAGWS PVVWETEYQQVLTGEDPVFRWTSGAALRPSLQALARWDAEEGSAEGAGLLEAFVDRYRAA MREAYPPVPGVTADDGGPVTIFPARRLFMVGQKPA >gi|289557686|gb|ADCD01000046.1| GENE 28 32280 - 35519 2398 1079 aa, chain + ## HITS:1 COG:Cgl1878 KEGG:ns NR:ns ## COG: Cgl1878 COG4581 # Protein_GI_number: 19553128 # Func_class: L Replication, recombination and repair # Function: Superfamily II RNA helicase # Organism: Corynebacterium glutamicum # 211 1061 12 838 850 897 56.0 0 MQRLGEGRVLGQRHDRRVGGLLVGPRDLRREPGPRREVPEPAPDQATVRRDPLEHRVGHH DVRRPRRAPLRGVDRLEAQVGGGARAGRLLPGPLEHRGRVVQTDHLGVRPALGQRPGQGP RAAAQIHHDARRLGAHAPHQVVEGAGAMLGEALVLRGIPGEPPALSAGHVPDDGVGVRVR ALRRDLTHGGTVSRGAADTLGAMTSPATNPPSLTDRIDALPPTPDADDVFGAFAAWTEDR GISLYPAQEEAALELVQGRHVILATPTGSGKSLVALAAHADALAHDAVSYYTAPIKALVS EKFFALVDVFGAENVGMVTGDSTVNGDAPIICCTAEILANRALREGSGMEIGTVVMDEFH YYADPSRGWAWQVPLLELPQARFLLMSATLGDTTRLEADLIERTGREVAVVAHAERPIPL TFEWSEVPLQEKVEELVSTHQAPVYIVHFSQLDAVETAQGLSSISVTSKEEKEAIAARIA GFRFSAGFGHTLNRLVRAGIGVHHAGMLPKYRRLVEKLAQDGLLKVICGTDTLGVGINVP IRTVLLTALSKFDGEKTRLLQAREFHQIAGRAGRAGFDTSGTVVVQAPEHVIENKAAERK AAAKFANVKDEAERAKRMKQSVKSGKRKTPPAGFVSWGPATFERLVSAEPEPLVSRMRIT HSMLLNILDRPGDPVIAVRRLLRGTHETPARQAVLMRRALGIFRELLATGVVERLPEPDA EGRTVDLTVDLQPDFALNQPLSPFALAALDLLDPAEPDHALDVVSVIEATLDPPRQVLSA QVKHAKGEAVAAMKAEGMDYNDRMRALDEVTHPRPLAELLEQQFELYRQDAPWLAEFELT PKSVVRDMFERAMGFGDYVRFYGIARSEGVLLRYLTDAVKALRHTVPEAARTEELQVLLD WLDEMVKQTDSSLLEEWEDLVAGDIDELRRDMEALEPPAPPRLTDNEPVFRVMVRNAMFQ RVRLFGDERDAALAALSGDLSADDWADALDAYFDDHEDIDDGPAARGPELFRVAAAPDVA APVELVGPRWWAVRQVLKDADGDLDHGINAVVDLDASDEAGHPVIRVVSVGAPESGWGL >gi|289557686|gb|ADCD01000046.1| GENE 29 35552 - 37018 1037 488 aa, chain + ## HITS:1 COG:Cgl0575 KEGG:ns NR:ns ## COG: Cgl0575 COG0596 # Protein_GI_number: 19551825 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Corynebacterium glutamicum # 65 472 42 420 427 224 40.0 4e-58 MAGDPRGFAPLEPARHRVGERTELYDGTVTVDHWFTVPIDHALGLAEAEAQDAEGTGVGP HRRGTLTVFAREIRAKDDPEGERPWALYLQGGPGSAGPRPARLNGWLGALAESHRVLLLD QRGTGRSTPATVATLTAPGAFATDEARAEHLVHLRAPSIVRDAEMLRLALGAGPWTTLGQ SFGGFCTLSYLSFHPEGLQRSLVTGGLAPLTGHADRVYRATYARMRARAEEFFDRHPADR DAWSEAVGLIRAAEAAGDPLPLPGGGPLTVGRAQALGMLLGGNTRVDRLHWVLAEAVDRT GPAPRLSETFLAAVAEQDDRLVNPLYTVLHEAIYAQSADLADGRSDTGWSASRMLAEHPD FDPEATAVPLPTGEHVMPWSVEVDPRLRPLAGTARLLAERTQWGPLYDVAALAQNTVPVA AAVYADDVYVDRDLSLETAGRVRGLRVWETDAFHHDGIADDGPAILDRLLAMTAADGAGT TTAPDPVD >gi|289557686|gb|ADCD01000046.1| GENE 30 37072 - 38331 1047 419 aa, chain - ## HITS:1 COG:Rv2723 KEGG:ns NR:ns ## COG: Rv2723 COG0861 # Protein_GI_number: 15609860 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane protein TerC, possibly involved in tellurium resistance # Organism: Mycobacterium tuberculosis H37Rv # 1 397 1 395 397 380 52.0 1e-105 MEINGLTWGLTIALIVGLLAFDYFAHVRKAHTPTIKEAAVWSGVYVGLALVFGLVFFAFG DTQHAVEYYTGYLLEKALSVDNLFVFLVIMASFRVPREYQQKVLLFGITFALISRTLFIL LGAAVIAAWSDVFYLFGLFLLIIAGGQLKGEMSGDAEGAQDEADNVMVRLVKRFLPASDQ FDGERLFTTVDGKRLMTPMLLVMIAIGATDILFAFDSIPAIFGVTQEAYIVFTATAFSLM GLRQLYFLIDGLLDRLVYLAYGLSALLAFIGVKLILHALHENNLPFINGGENVPVAEIPT NLSLVVVVVILAITVLVSLYSPKGQALRALQNAEKYSYRYSKLAEDADPAERERAAALMD RWTARAEALDQRWRDQLLEHKDAWSAIIRTAHETRFADPRDDDARGVSEQIVRQDGPTV >gi|289557686|gb|ADCD01000046.1| GENE 31 38140 - 38610 85 156 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289705490|ref|ZP_06501882.1| ## NR: gi|289705490|ref|ZP_06501882.1| hypothetical protein HMPREF0569_0830 [Micrococcus luteus SK58] # 104 156 13 65 65 84 100.0 2e-15 MLRVAEGEEHEAEDEREADVDARPDRGLLDGRRVRLAHVGEVVECEESDDQGDRQAPRES IDFHRVTFRRQGSVLRRKSLRPTVGSPVQAPVSGRRRALGGRGVLTSTVFGILPYVAGQS TPSHDDAPLRGGQNGASTGRLARAAGQRSSRRARSA >gi|289557686|gb|ADCD01000046.1| GENE 32 38577 - 39620 992 347 aa, chain - ## HITS:1 COG:Cgl1921 KEGG:ns NR:ns ## COG: Cgl1921 COG0861 # Protein_GI_number: 19553171 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane protein TerC, possibly involved in tellurium resistance # Organism: Corynebacterium glutamicum # 12 321 11 328 369 285 48.0 1e-76 MDVLSPVFETTTLVVLGVILLLDLLYVARRPHEPSMKEAGLWIGFYVALALVFAGLLFAL GDAQHGTEFLAGWVTEYSLSVDNLFVFLIIMAKFQVPRRYQQEVLMVGIIIALIARAVFI AVGAVAIEHLTWVFYIFGAFLLWTAWQQLKDDGEDEESEPGVVARLTRRLNVAPDYDGNR LRTTVDGRRMFTPMVVVFITIGLTDVMFAVDSIPAIFGLTQNWFIVLTANIFALMGLRQL YFLLGGLMDRLVFLKHGLAFILAFIGVKLVFHALHENELPFINGGHPVTAVPEISTFVSL GVILGTLVLATVASLIWGRTDRESASPLTGQVQRMEDYADRARRDDR >gi|289557686|gb|ADCD01000046.1| GENE 33 39697 - 40461 446 254 aa, chain - ## HITS:1 COG:no KEGG:Mlut_11210 NR:ns ## KEGG: Mlut_11210 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 16 254 16 254 254 237 95.0 4e-61 MTALALLALGLHDLLDAVLPGAWPAPRRRWLARAGAAVAAVLAAVLVAVLAPTALSVAVG GGLVALGLLMGWTWLHPDRPLGVVAVVATVGLVAVLESTLAPAGLRSAPPALTLLAVALA LTETGNRVTRAVLALAGRPADGGDEEAEEPAAEPATVPSAAPTDAAADGLRGGRYIGPME RLLMVVLGLAQAYPVIAALMAAKGIVRFPEISADRGAGSRAEEFLIGSLASWGLAAAGAV VVWLALGLTAPGAA >gi|289557686|gb|ADCD01000046.1| GENE 34 40458 - 41096 487 212 aa, chain - ## HITS:1 COG:no KEGG:Mlut_11200 NR:ns ## KEGG: Mlut_11200 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 212 1 212 212 279 96.0 5e-74 MSAAPPVAAVIADIVGSRALPDRERAQEQILAAFAAAERDVPPLRPAWASVGDEFQALHR AWPDALRLTVRVTLALPPGLDLRFGIGLGQRRALDAGGDGIEDGTAWYRAREAVERAHER AAGAGTAFRAADPSLTAAVDGLVLLRDHVLGRLKARERRIAAALLGGATQAQTARAERIT QSAVSQAVARSGIDRLLELDAELAAAATEVAP >gi|289557686|gb|ADCD01000046.1| GENE 35 41173 - 43302 2199 709 aa, chain - ## HITS:1 COG:MT1669 KEGG:ns NR:ns ## COG: MT1669 COG0556 # Protein_GI_number: 15841088 # Func_class: L Replication, recombination and repair # Function: Helicase subunit of the DNA excision repair complex # Organism: Mycobacterium tuberculosis CDC1551 # 5 705 39 733 739 948 71.0 0 MSLAQKINRVVAPFEVISPYQPSGDQPKAIAELAERVEAGEKDVVLMGATGTGKSATTAW LVERLQRPTLVMVQNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEK DSSINEEVERLRHSATNALLTRRDVIVVATVSCIYGLGTPEEYIEQMVTLRRGAEMDRDV LLRRFVQMQYVRNDVDFHRGTFRVRGDTVEIIPMYEELAVRIEFFGDEIESIQTLHPLTG QVVREEEEMYIFPASHYVAGDERMGRAITTIEDELRERLQELESQDKLLEAQRLRMRTTY DLEMMQQMGYCNGIENYSRHIDGRPAGSAPHCLLDYFPDDFLLVVDESHVTIPQIGAMYE GDMSRKRTLVEHGFRLPSAMDNRPLKWDEFLERIGQTVYLSATPGAYELGQADGYVEQII RPTGLVDPQVVVKPTEGQIDDLLEQIRVRTAKDERVLVTTLTKRMAEDLTDYLLEAGVKV EYLHSDVDTLRRVELLRELRKGTFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTT SLIQTIGRAARNVSGEVHMYADNVTDSMRRAIEETERRRAVQIAYNEEHGIDPQPLRKRI ADITDQLAREDADTADFLKGMGGVKSGFDFGMGHRGLSSLDRAPATGEGAEAPAVDPASL PAKDLADLIEQMSQQMHQAAADLQFELAARLRDEVGELKKELRQMKREQ >gi|289557686|gb|ADCD01000046.1| GENE 36 43340 - 43987 567 215 aa, chain - ## HITS:1 COG:MT1667_1 KEGG:ns NR:ns ## COG: MT1667_1 COG0237 # Protein_GI_number: 15841086 # Func_class: H Coenzyme transport and metabolism # Function: Dephospho-CoA kinase # Organism: Mycobacterium tuberculosis CDC1551 # 13 209 2 198 208 154 50.0 1e-37 MTETDPVAERPRVHVGLTGGIAAGKSAVARVLQERGALLVDSDALARLVLEKGTDGLAAV RDEFGDRVITADGELDRVEMARIVFGDEGARQRLNRIVHPRIRAAARRIVAEAGPDAVVV QDVPLLVETGQADAFDLVIVVEAPLEERLRRMVEDRGMSRADAEARIAAQATDEQRRAVA DVVIVNDADLERLASVANQVWDRFLAPDAAEPSAD >gi|289557686|gb|ADCD01000046.1| GENE 37 43984 - 46353 2098 789 aa, chain - ## HITS:1 COG:Cgl2259 KEGG:ns NR:ns ## COG: Cgl2259 COG1292 # Protein_GI_number: 19553509 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Choline-glycine betaine transporter # Organism: Corynebacterium glutamicum # 13 543 18 542 615 484 46.0 1e-136 MTSPLTRLHDTLGLRTSPAIFFGSAAVVVLFTAAMGLFPGPVQAAFGAVSSWLRYDVGWI YTLSLTLLVAFLFILAVTRYGRVKLGDDDAVPEYSGLTWFGMMFAAGVGAVLMFWGIAEP MNHYANPPMAGTEPFSDRAASEAMSIANFHFGIHMWAILLVPGLCFGYFTYKRKLPPRVS SAFQPLLGDRIHGPIGKTIDIIAVVSTVFGLGVSVGLGALQINAGMNYVLGTPVAGWVQA LILAVITAVGTASVLAGMDKGVKRLSYANILLAIALLVYVLMWAVSSMDVIRGTVQAIGE YASMLPLLSTYNDTYNSGQWSGDWTVFYWAWTVTWAPFVGMFFARISRGRTIRSFIMAGL GLPTAFVIIWMGIYGYSAFQSDRATAPAPGQGGDLTQTIVTDGNVQAALFQHLQGTPLYT VAAVVALVVITLFFITSIDSGALVMDAMANGHEDAAPRRQSVFWAVSIGAVCAAIILTAG ENGLAALQEVIIVIGLPILLITVTQAALLLQALREDAGAARPMRTRQWKQVLPAEEYRRR ATEDGVDVSDFVIRPEFEVGTEPENDTHTPKTWHQQRIDAAKALVTVGLTGGIAAGRTEV GAELERRGAVVVEFDDLMGEILVPGNPVLEELRSVFGEDIVRADGTLDARALNRLTTESS TARTRMYEIVSPAVRDEANRRAREIGEDSVLVVDLALLAETGSERDFDQVLAVSAPAEVR VARLMESHDMTRERAWAFIDEEAADEERAEIADTVIENDGSLEDLQEAVRAYWEAKIQPQ LEAARGERV >gi|289557686|gb|ADCD01000046.1| GENE 38 46508 - 47209 558 233 aa, chain + ## HITS:1 COG:Cgl2074 KEGG:ns NR:ns ## COG: Cgl2074 COG1739 # Protein_GI_number: 19553324 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Corynebacterium glutamicum # 26 231 16 213 217 155 42.0 8e-38 MPDPAPAPTARCTVLPASARDPDGWLEREVEIRRSRFLTYLGRVEDEAQAREMVAVLRRR HHDARHVCSAFVLGPARDRMRSSDDGEPAGTAGVPMLEALVQRETAPGRTDLTDVCAVVV RWFGGIKLGAGGLVRAYSDSVSGALDAAPLRTRSRLALLAVEAPHTDAGRWENELRAAGV SVLEASYGAAAVRLTVGVPDTEEARAAFAARLADVTAGAGHAERIGEDWVDHE >gi|289557686|gb|ADCD01000046.1| GENE 39 47202 - 48419 808 405 aa, chain + ## HITS:1 COG:PA4617 KEGG:ns NR:ns ## COG: PA4617 COG2813 # Protein_GI_number: 15599813 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S RNA G1207 methylase RsmC # Organism: Pseudomonas aeruginosa # 28 399 8 369 374 106 32.0 9e-23 MSEPLPRGVTPDVARGGLPDDLTAGVDFAALDRWPLPPEPDRQAHDAADLLLLDTLAGWI ASGHVPGPVAVLEDRHGALTLPLLTAGHDVRVHQDDASAERSLDANLAAWRAAGRLGGET GELERSATPEEAARGARTVLLPLPRSLDELDRLSRIVAGAADPGVVLLAGGRDKHMSPRM NAVLGAAFEDVVAGRGRRKARVLTARGPRPGVTARPPEEADRDVPGVGRLHLVAHAGTFG GAAADPGSRLLLASLADDPRPPGRVVDLGCGNGLLSVGAARLWPHVTVVATDQSAVAVAS TLATARANRVADRVRAVRDDALATWPDGTEECVLLNPPFHDGNAVDPSVAHRLVAAAARV LEPGGRLWCVWNSHLRYRSVLEDLVGPTRQTARDRTFTVTVSERR >gi|289557686|gb|ADCD01000046.1| GENE 40 48564 - 50021 2434 485 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|239917616|ref|YP_002957174.1| SSU ribosomal protein S1P [Micrococcus luteus NCTC 2665] # 1 485 1 485 485 942 99 0.0 MTTTSNAPQVAINDIGSAEDLLAAIDATIKYFNDGDLVEGTVVKVDRDEVLLDIGYKTEG VIPSRELSIKHDVDPDEVVAVGDTVEALVLTKEDKEGRLILSKKRAQYERAWGDIEKIKE EDGVVEGTVIEVVKGGLILDIGLRGFLPASLVEMRRVRDLAPYIGQKLEAKIIELDKNRN NVVLSRRAWLEQTQSEVRSNFLHKLEKGQVRNGTVSSIVNFGAFVDLGGVDGLVHVSELS WKHIDHPSEVVEVGQEVTVEVLEVDMDRERVSLSLKATQEDPWQLFARTHALGQVVPGKV TKLVPFGAFVRVEDGIEGLVHISELASRHIDTAEQVVSVNDELFVKVIDIDLERRRISLS LKQANEGVDPEGTEFDPALYGMAAEYDEEGNYKYPEGFDVETNEWMEGFEAERAAWEQQY ADAQARWEAHKEQVRRSLEEEANAGADAGAGLGGSSYSSEAPSSDGGTLASDEALAALRE KLTGN >gi|289557686|gb|ADCD01000046.1| GENE 41 48564 - 50489 615 641 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|32471711|ref|NP_864704.1| 30S ribosomal protein S1 [Rhodopirellula baltica SH 1] # 6 528 14 519 560 241 31 1e-62 MAGRATGRSSSPSRTRSARSTGRGGSPSARDGAPPSGWAPQPTPWAWARGSGSTRPGSPR SGSAGTPAGPAPRCWRRPVSWRSCGPARRRRSTRSCGPDDPCTPSSASDTLDGHIRAHLI HVHHDPRRVGPLWCPDAADQRHRSRRDPRSQRSPSYMTTTSNAPQVAINDIGSAEDLLAA IDATIKYFNDGDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVAVGDT VEALVLTKEDKEGRLILSKKRAQYERAWGDIEKIKEEDGVVEGTVIEVVKGGLILDIGLR GFLPASLVEMRRVRDLAPYIGQKLEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSNFLHK LEKGQVRNGTVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEV DMDRERVSLSLKATQEDPWQLFARTHALGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISE LASRHIDTAEQVVSVNDELFVKVIDIDLERRRISLSLKQANEGVDPEGTEFDPALYGMAA EYDEEGNYKYPEGFDVETNEWMEGFEAERAAWEQQYADAQARWEAHKEQVRRSLEEEANA GADAGAGLGGSSYSSEAPSSDGGTLASDEALAALREKLTGN >gi|289557686|gb|ADCD01000046.1| GENE 42 50164 - 51537 973 457 aa, chain - ## HITS:1 COG:Rv2416c KEGG:ns NR:ns ## COG: Rv2416c COG4552 # Protein_GI_number: 15609553 # Func_class: R General function prediction only # Function: Predicted acetyltransferase involved in intracellular survival and related acetyltransferases # Organism: Mycobacterium tuberculosis H37Rv # 121 457 91 408 408 94 31.0 4e-19 MTPHTDAPEGPSLRRLADAAEARLGEHGLALRDLGVLGPEDPAAAHFAAAVERGFYETVP TGAALRQQLEAHAADGRRRLGVYAPGDDPAARRPAATFEDFVQPLTTWPGRTVDAWLITD VTVSPDARRRGVLRAMMLRSLADARDAGLCAAALTATEAAIYGRFGFGAATRWHAVRIDV SGAPALTGAPAGGRVTVEEPREIPGLVDELYGRVLPATPGSVQRTSSSVPRWEDREASRN EGRGSGLYAAVHRDDAGRVQGVALYRFEGWEKEPPTITVTTFLAATADARRGLVHHLARL DLVERIEWGRAPEPGWLEALFVDERRVSRHRGSDDLYLRVLNLPAAMAARGWAGDGEVVV AVEDALGAIDGTWRLTVRQGRGAAERLGPAADAVGLGAGLRLDAARFSALWLGGHSRGAG AAVLAEAGVVAELRAGAAEAFDALVRPGRPLHTLVGF >gi|289557686|gb|ADCD01000046.1| GENE 43 51521 - 54334 2485 937 aa, chain - ## HITS:1 COG:MT1665_2 KEGG:ns NR:ns ## COG: MT1665_2 COG0749 # Protein_GI_number: 15841084 # Func_class: L Replication, recombination and repair # Function: DNA polymerase I - 3'-5' exonuclease and polymerase domains # Organism: Mycobacterium tuberculosis CDC1551 # 404 937 82 592 592 493 54.0 1e-138 MAADPTPEAPQRLLVLDGHSMAFRAFYALPAENFATDTGQHTNAVYGFTAMLLTMIRQQR PTHVAVAFDLSGPTFRSEEYGEYKAGRSETPAEFAGQIELTVKVMEALGIPTLTFEGYEA DDIVATLSARAEEAGWEAVVVSGDRDAFQLISERTTVLYPKKGVSDIPPMDADAVLAKYG VAPAQYPELAALVGEAADNLPGVPGVGPGFAAKWLKQYGDLDGVLAHAHEITGKKGEALR EHLEDVRRNRRLNALVRDLDLPIGLEAMRLEMPEREPVEELFDALQFNRIRERVFEVFGE RVGEDAPPPEVEAAPEFTEATTAEDVRAFLAAEAGTLLGVHVDVEGPALLPRRKVPVPGT FGTPVGVALVGEHAGLHVSLDGDTPDPALVAAVRDALGEGGLAKAVHDLKRTLKALTAPT EGDGLGPDAALDGVVDDVLLSAYLIQPDRRDTSLEALAEAHLHTPLTAPREPAQQRAQGT FDLDGGQAAAERAARAADAVRAAWVVRRLSTQFTPQVLDRGAQRLLQELEIPLSRLLARM ELTGIAVDVDALTGLREDFTAAADAAKESAWASVAEETGGMQVNLGSPKQLQEVLFERLN MPRTRKTKTGYSTDVDSLQDLLEQTQHPFLENLMAHRDATKLRQTVEGLLETVAPDGRIH TTYSQTAAATGRLSSLHPNLQNIPVRTEAGRRIRGVFVADEVAGEQAVLLSADYSQIEMR IMAHLSEDEGLIQAFREGEDLHSFVGSQVFGVDPDEVTAEQRAKVKAMSYGLAYGLSSFG LSKQLKISVDEARGLMKGYFDRFGGVRDYLRDVVAQARQDGYTSTIEGRRRYLPDLSSDN RQLRDMAERAALNAPIQGSAADIIKRAMLDVQAGLEEHGLASRLLLQVHDELILEVPAAE LEQSTALLKERMGRAAELSVPLDVHVGQGRSWHDAAH >gi|289557686|gb|ADCD01000046.1| GENE 44 54333 - 54923 445 196 aa, chain + ## HITS:1 COG:VCA0580 KEGG:ns NR:ns ## COG: VCA0580 COG2050 # Protein_GI_number: 15601339 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Uncharacterized protein, possibly involved in aromatic compounds catabolism # Organism: Vibrio cholerae # 63 196 52 186 195 95 40.0 4e-20 MGAHVSSRRVARGAPVACASLVLMSEHTATTPAASERVYRPGVTPELSPAELAAACAEAG LTPELVTALGGAAISPLAQKMGLRFVELTAERAVATLPVAGNEQPVGLLHGGAHLVLAES LGSMAAKIHAGPDRNVVGVEISATHHRAVRSGLVTGTATAVHLGGTLVTHEVVMTDEQGR RLSTARITNLVLAPRP >gi|289557686|gb|ADCD01000046.1| GENE 45 54984 - 55361 318 125 aa, chain - ## HITS:1 COG:BH1313 KEGG:ns NR:ns ## COG: BH1313 COG1320 # Protein_GI_number: 15613876 # Func_class: P Inorganic ion transport and metabolism # Function: Multisubunit Na+/H+ antiporter, MnhG subunit # Organism: Bacillus halodurans # 3 97 2 98 117 60 37.0 8e-10 MDTAMNIIGSLMIVLGALVFLGAALGLVRFPDPYTRISATGTAGGVGMILLVVGALLHMP SVANVVKVVLIVVLQLGTASVATMALARSTYLTGVPMNPGHYDELAEDTPGREHSEPAPR APDEV >gi|289557686|gb|ADCD01000046.1| GENE 46 55375 - 55665 216 96 aa, chain - ## HITS:1 COG:no KEGG:Mlut_11090 NR:ns ## KEGG: Mlut_11090 # Name: not_defined # Def: multisubunit Na+/H+ antiporter, MnhF subunit # Organism: M.luteus # Pathway: not_defined # 8 96 6 94 94 114 78.0 1e-24 MSLTDLHYDWSLIGIDVGIALLLVAAVVSAYRILMGPLDADRAVSGDLLTFSVTGMVTLF GVRAANAFTFDLVLIAAITGFLTGMSLARALTRGRR >gi|289557686|gb|ADCD01000046.1| GENE 47 55662 - 56102 349 146 aa, chain - ## HITS:1 COG:no KEGG:Mlut_11080 NR:ns ## KEGG: Mlut_11080 # Name: not_defined # Def: multisubunit Na+/H+ antiporter, MnhE subunit # Organism: M.luteus # Pathway: not_defined # 9 145 8 144 144 191 76.0 6e-48 MSQAHQYDDGTQDFHDGTASVWSWPLRLAGFVLWYLWALVTSSGAVLHDLITPGDDARSG IARVRTSCRTDLEVTVLSSLITLTPGTLTLGTRRAGAVDDEPGDPDARRLLYVHGLYFDD ADGLRADIHDMERRMLHALRRTGVAA >gi|289557686|gb|ADCD01000046.1| GENE 48 56099 - 57730 1438 543 aa, chain - ## HITS:1 COG:Cgl0268 KEGG:ns NR:ns ## COG: Cgl0268 COG0651 # Protein_GI_number: 19551518 # Func_class: C Energy production and conversion; P Inorganic ion transport and metabolism # Function: Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit # Organism: Corynebacterium glutamicum # 5 435 2 433 510 270 41.0 7e-72 MSLDALGLALPLFVAVPLLAGGLLVIAGERPGLHRRVLLSLLGLSSLGGAGLILLTLDGT VVAGGVGGWPDGIAIAFAADTFTGLMLTLTAGLSWVGALFAYGSRVTNSVYFAPLLLVLT AGVNGALLTADLFNLFVFIEVMLLPSYGLFVLSANRREPLRRVDGARLYVTLNLFTSTIL VVGVGFIYGITGSVNLAVLAGAAARDERVAVAGFMVLFALSIKASVVPLHGWLSKAYPST SPAVTAIFSALHTKVGVYAIYRIYSVLYDGEPRYLWAILVLCSLTLMIGAVASLGEQSTR AILSWQMVSGIGGILVGVGLSTQLGLAAGIFYMIHHMVVMTSLFTATGAVEVRYGSGRLA DLQGLARREPLIAAAYFAGLLSLVGIPPFSGFAGKLMLVVAGVEAGRTVVVAVVLIASLL SLWGLLRIWNGWFWGEPEMPRHHRERLETAALPIVEARADGPAASAGAPAAVHTPTGVLP VVFNRDEDLTRSRIPFSLALPTVLTAALSLALGLGAQGLWLVSDTAAQGLTDTHAYVEAV IGR >gi|289557686|gb|ADCD01000046.1| GENE 49 57727 - 58182 473 151 aa, chain - ## HITS:1 COG:Cgl0269 KEGG:ns NR:ns ## COG: Cgl0269 COG1006 # Protein_GI_number: 19551519 # Func_class: P Inorganic ion transport and metabolism # Function: Multisubunit Na+/H+ antiporter, MnhC subunit # Organism: Corynebacterium glutamicum # 1 119 1 120 127 92 45.0 3e-19 MTVAITVGLLMFGAVYLFSKRELLRVILGMVLLGHAGNLAILAAGGTDRRALPFIGNGDV AAQADPLPQAFVLTAIVISFAVTVLLLVLAVTGRSDDQVADPSEDADPHELAAADARFPR AELGAAVRHLATQPQPVLHGSHRHDDREERR >gi|289557686|gb|ADCD01000046.1| GENE 50 58179 - 61133 2154 984 aa, chain - ## HITS:1 COG:Cgl0270_1 KEGG:ns NR:ns ## COG: Cgl0270_1 COG1009 # Protein_GI_number: 19551520 # Func_class: C Energy production and conversion; P Inorganic ion transport and metabolism # Function: NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit # Organism: Corynebacterium glutamicum # 40 562 3 520 520 337 47.0 5e-92 MRCREACGFESHFGHRRRAATRRGRRVRDRSTRAEWCPVLLTSLLLTLLSVVAAVPASRA LGRDAGWVLAAPLLAAAGVLIAAWTGDNRTEHHPWIPAVGVDLDLRLNGLALVFAMIVLV IGAAILAYSSRYLSRDRTESRPGSFYLLMTAFAASMLLLVLADNIVVLFVAWEFTSFASF FLIGRSGDHARDPAIRTLLVTVGGGLALLAAVAVMMVTAGTASLSGVLASNIWQDPATST VLAVLLALAAFTKSAQFPFQAWLPDSMVAISPVSAYLHAAAMVKAGVFLLLVFSPVLADH AVWSTLLIACGLITALFGAITALRQHDLKGLLAYSTMSQLGLLTAVIGIGTPAALTAAVV HTVAHALFKSALFMLIGIVDHEAGTRDLRVLAGRHVRMPITGTALTLAAVSMAGVPPLLG FVSKEGLLDAALGTPGPAWAAPVVTGAIALASVFTVAYSGRLVLGALGRWGASPAGTAQP WESTRGDEVHEANPAFWTMPVLAAVAGVVLGLAPQALDAPVSAAAQTVAGAQEHAHLALW HGVTPALLLSAAVIATGLVLVLLRRPVERVAARTGLPFSALDIVDDIRFGLVRLGEVVGR HSGGMAPRAHLLIPSVMLGVLAVVGVLLVDELPDVVGQTARWHDWALVVLVAVGVAATLR ARTRIAAMVVVGTVGFGVTLWFFTLGAVDVALTQMLVEVLTVCVMVLLLRRLPRRFRRDP APRRAGALVAATIAGVASTVGVLAFTGRREMSEIARYYLTETYEQAGGVNVVNVILVDFR ALDTLGEMTVLGVTGLTVAALLMNRAPVRALRSIVDERSPLAHVHENLVYARTFGRGLGP VIIAMSALLLLRGHYEPGGGFIAALVAGAGYALMYLSADTDRDRRLRWPYLTLIGSGVAL GTAAGLTGYLTGEGFLAASGVKILGYGLSTTLVFDMGVYLCVLGLVVAAFTLLGPDTVDQ APGDGDAPEKAAPGAATTREEATR >gi|289557686|gb|ADCD01000046.1| GENE 51 61347 - 61943 410 198 aa, chain + ## HITS:1 COG:MT1662 KEGG:ns NR:ns ## COG: MT1662 COG3707 # Protein_GI_number: 15841081 # Func_class: T Signal transduction mechanisms # Function: Response regulator with putative antiterminator output domain # Organism: Mycobacterium tuberculosis CDC1551 # 13 198 18 203 208 197 60.0 1e-50 MSTLTPPEETGLRAVVAEDETLIRLDLVEVLTGAGYRVVAEAGDGRAAVEAVREHRPDIV VMDVKMPVMDGIAAAGEIAGERLAPVVMLTAFSQRELVERARTAGAMAYVVKPFTEADLV PAIELAVARFDELRSLEAEVRDLGDRLETRKIVDRAKALLQERMRLSEAESFRWIQKTSM DRRLTMREVAQAVIDQVG >gi|289557686|gb|ADCD01000046.1| GENE 52 61962 - 63449 1081 495 aa, chain - ## HITS:1 COG:MT1653 KEGG:ns NR:ns ## COG: MT1653 COG0469 # Protein_GI_number: 15841072 # Func_class: G Carbohydrate transport and metabolism # Function: Pyruvate kinase # Organism: Mycobacterium tuberculosis CDC1551 # 2 470 3 470 472 465 57.0 1e-131 MRHAKIIATFGPATDSDETTRAIIRAGADVVRLNMSHGDHAVHETSYERVRRLSVEEGRP VAIFADLQGPKIRLGRFTDGPHLLERGDRITITTRDVPGTRELVGTTHKGLPGDVAPGDV LLVDDGKVRLRAVEVTDTDVLAEVEVPGMVSDNKGINLPGVAVNVPALSEKDERDLRWAL RTGVDMVALSFVRDAADVDRVHEIMDEEERRVPVIAKIEKPQAVENLEAIVDAFDAVMVA RGDLGVELPLEDVPVVQKRAVDLARRWAKPVIVATQVLESMIDSPRPTRAEASDCANAVL DGADAVMLSGETSVGGYPVETVQTMARIIESTETHGLELIHPLGSRPRTRGGAITRAAVE VANQLDIPFLATFTESGDSARRLSRLRPRQPIYAFTHHEHTHNILCLTWGVYPKMVPFQD STDKMTLQVEQSLTSEGIAQHGDLVVIAAGSPPGAVGSTNTLRVHRVGDDAAGGSSAASP QTREPVGFWPARSPL >gi|289557686|gb|ADCD01000046.1| GENE 53 63526 - 64911 1166 461 aa, chain - ## HITS:1 COG:MT3973 KEGG:ns NR:ns ## COG: MT3973 COG0493 # Protein_GI_number: 15843490 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: NADPH-dependent glutamate synthase beta chain and related oxidoreductases # Organism: Mycobacterium tuberculosis CDC1551 # 2 453 27 482 488 478 57.0 1e-134 MDFKDVYVRQDEAIVRTQAGRCMDCGIPFCHSGCPLGNLIPEWNDLVRRGRWDEAAARLH STNNFPEVTGRICPAPCEDSCTLGINQPAVTIKQTEVAIAEQIFDNDWLEPVVPARLNGH TVAVVGSGPAGLAAAQQLTRAGFTVVVYERDERLGGLLRLGIPDFKLEKDVLDRRLAQME AEGTRFRTGVQIGVDLPWDQLKARFDAVIVATGAPVARELPVPGRGLDGIHLAMDYLVQS NRAVAGDEVPDQISAEGRHVVILGGGDTGADCIGTAHRQGAASVTTLAIGQQLPVERPVH QPWPTIPKVHQQTTADAEGGAREHLASTVEFLGDEHGRVRALRVAETEYREDGTRGPKAG TEREVQADLVLLALGFTGIEEELLTQQLGVHVTRGLVTRKDGYETDEPGVFACGDAGRGA SLVVWAIAEGRACAQEVDESLERWSRLPHPVDPDDRGLVLG >gi|289557686|gb|ADCD01000046.1| GENE 54 64979 - 69631 3977 1550 aa, chain - ## HITS:1 COG:Rv3859c_2 KEGG:ns NR:ns ## COG: Rv3859c_2 COG0069 # Protein_GI_number: 15610995 # Func_class: E Amino acid transport and metabolism # Function: Glutamate synthase domain 2 # Organism: Mycobacterium tuberculosis H37Rv # 410 1210 3 812 812 1017 64.0 0 MPVASSPASAPRAGGPVDPFVRYADVPSAQGLYDPSRETENCGLAVIATLRGTPNHDIVQ HALTALRALEHRGAVGADEGTGDGAGLLTQIPDELFRAVVDAELPPVGEYVAGTAFLPPV DGERAEAKEAVERLAEEEGLQVLAWREVPTDPSALGVGSRAAMPAFEQLFLSLADGQDGT EPGQSLDVRAWRVRRRAQSRAGVYFPSLSSQTIVYKGMLTTAQLEPFYPDLSDERFTTRL GVVHSRFSTNTFPSWPLAQPFRTIAHNGEINTVKGNRNWMRARQGQLKHPMLGEVPEDLF PLISPLGSDSASFDEVAELLMLSGRPLTQAIMMIIPEAWENHATMDPARRAFYQYHSMLM EPWDGPAAVAFSDGTQVGAVLDRNGLRPARWWVTDDGLVVLASEVGVVPIEPSAVVRKGR VAPGRMFLVDTEQGRIIGDDEIKAEVASAQPWEDWVHQNLLDLESLPEREHVRHTSESIL QRQRIFGYTSEELRILVGPMAQTGAEPLGAMGTDTPIAVLAKRPRLLFDYFVQSFAQVTN PPLDAIREEQVTSMRTAIGPQGNVLSLEQVRTRQVDVPFPVIDNDQLARIQHLRDADGTR LTLKVNGVYRVAGGVEELRAQLKAICEQVSAAVNRGVEYVVLSDRGATAQWAPIPSLLLT SAVHHHLLASANRTRSSLIVEAGDVREVHHVAVLLGYGASAVNPYLAMESAEELVRTGEV SGVTAEQAVANLIKALGKGVQKIMSKMGISTVASYTGAQTFEALGLSRRFVDRYFVGTTS PLDGVGIDVVAAEIQARHEFAYPPDGNDINPYRELEVGGEYQWRREGAPHLFNPETVFRL QHSTRERRYDVFKDYTRRVDDQAEELMTLRGLMRLRTGERPPVPVSEVEPVESIVRRFST GAMSYGSISQEAHETLAIAMNRLGARSNSGEGGEDPERLLDPERRSKIKQIASGRFGVTS LYLATATDLQIKMAQGAKPGEGGQLMGTKVYPWVARTRHSTPGVSLVSPPPHHDIYSIED LAQLIHDLKRANPTARVHVKLVSESGVGTVAAGVAKARADVVLISGHDGGTGASPLNSLK HAGTPWEIGLAEAQQTLMLNGLRERVTVQVDGQLKTGRDVVIAALLGAEEFGFATAPLVV SGCIMMRVCHLDTCPVGVATQNPELRARFTGKPEFVVNFFEFIAQEVRELLSQLGFRTLD EAIGHRELLDVDAALHHWKSEGLDLSGILADPSVGRRPGHEDAPMRRTTEQDHDLASHID HRFIARLGDTLTTGTPVVMDEAVVNTDRSVGTMLGYHVTSTRLADELDDDTITVRLTGEA GQSLGAFLPAGVTLRLSGDANDYVGKGLSGGRVIVRPDAEAPFVAEENTVAGNVIGYGAT SGQLFLRGRVGERFLVRNSGATAVAEGIGDHGLEYMTGGEALILGETGRNLAAGMSGGRA WVLDLDREDLNPLAVREDALILEAPSAQDRLRIAELLELHRAETGSAVAAALLADLRAGG DAADAAWDRFTTVLPRQYDLVLRTRQAATAEGLDPDGEAVWDRLLEVTRG >gi|289557686|gb|ADCD01000046.1| GENE 55 69835 - 70818 814 327 aa, chain - ## HITS:1 COG:ML1274 KEGG:ns NR:ns ## COG: ML1274 COG0682 # Protein_GI_number: 15827656 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Prolipoprotein diacylglyceryltransferase # Organism: Mycobacterium leprae # 11 323 9 324 330 230 46.0 2e-60 MTAALAPLAAFPAPGWDGFQLGPVKIHAYALCIILGIVLALWLAERRWRARGGPEDRVLD IALWAIPFGFVGGRLYHVFSSPDRYFGPGFDGTGDPIQILYVWNGGLGIWGAIALGAVGA WIACRRYGLRLTAFGDVVAPGILLAQAIGRWGNWFNQELFGGPTTLPWGLEVDPASPNFP AGYAPDTLFHPTFLYECLWNLAGVALLLLVDRALHMRHGLMLWSYVAWYTAGRTWIEMLR IDDAEMVTLFGVTQRLNVWTSLLVFVIALAFIVGILLRHRGAAAGPHAHQSVWRAGHAPE GDDGAAVAAGRSGSHAVGAAEDDAVRR >gi|289557686|gb|ADCD01000046.1| GENE 56 70821 - 71618 355 265 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149916131|ref|ZP_01904653.1| 50S ribosomal protein L25/general stress protein Ctc [Roseobacter sp. AzwK-3b] # 15 247 12 245 263 141 35 2e-32 MTVHSKTAAALDAAKAAGRTGLVAFLPAGYPSVDECVEAVVAAAENGADVIELGLPYTDP VMDGPVIQGATQAALQAGFRVADVFDIIRRVTQRTDAAVLVMTYWNLVDRMGVDEFARRL AEAGGAGLVTPDLVPEEAGAWMEASDRHGLDRVFLTAPSSTDERVRLTVESSRGFVYAVS VMGVTGARDAVSTVAETVVRRAQDAGSEHVCVGLGVSQAAHVREIGAYADGAIVGTALVR ALSNGGPQAVGTLTRELAAGTVREG >gi|289557686|gb|ADCD01000046.1| GENE 57 71624 - 72949 1239 441 aa, chain - ## HITS:1 COG:MT1647 KEGG:ns NR:ns ## COG: MT1647 COG0133 # Protein_GI_number: 15841065 # Func_class: E Amino acid transport and metabolism # Function: Tryptophan synthase beta chain # Organism: Mycobacterium tuberculosis CDC1551 # 2 422 7 418 422 493 61.0 1e-139 MSADRPSTEPAIEFEGPYQGQAGPYFGDYGGQWMPESLMAALQELTRTYEEARQDPAFEA ELRTLFRDYVNRPSLLSEVPRFAADTPGVRIFLKREDLNHTGSHKINNVIGQALLARRMG KTRLIAETGAGQHGVATATAAALFGMECTVYMGEEDTRRQALNVARMQMLGAEVVPVAIG ARTLKDAINEALRDWVASVDTTHYLMGTVTGPHPFPAMVRYFHSVIGEEAREQILAQAGR LPDAVAACVGGGSNAMGLFHGFLDDPEVELYGFEAGGEGLETGRHAASITLGRTGVLHGA RTYLMQDEDGQTIDSHSISAGLDYPAVGPEHAFLHDTGRAVYEPVSDTECMDAFLRLTRT EGITPAIESAHALAGALRLARRWSDEGLVGPDAPEGQERIIIVNLSGRGDKDVATAAAWF GLGTAAEEKDPLEEMTPGEEQ >gi|289557686|gb|ADCD01000046.1| GENE 58 72979 - 74151 627 390 aa, chain - ## HITS:1 COG:MT1646 KEGG:ns NR:ns ## COG: MT1646 COG0134 # Protein_GI_number: 15841064 # Func_class: E Amino acid transport and metabolism # Function: Indole-3-glycerol phosphate synthase # Organism: Mycobacterium tuberculosis CDC1551 # 109 379 6 265 282 224 56.0 2e-58 MRDSRHVHHAPVRDSHEPHREHRAHHPSRRPQRRRRGRRRHRGRPGAQRPDPPRAARPRQ HARRVGHGGARARRLRGRLRRPARRLERRRVDRRGPDGRGRRRGPHRRQGRRGSRPARSL IRVSVLQEIIDGVREDLEPRRRAVPEARLAELVAAAPAPRDAHAALHGGRTDPAGIRVIS EVKRASPSKGALAEIPEPATLARAYERGGASAVSVLTEARRFGGSLADLDAVRAAVDLPV LRKDFTVTEYQIHEARAHGADLVLLIVAALDDAELVGFLQLTESLGMHALVEAHTPEEIE RGVAAGARILGVNVRNLKTLDVDPARYAALADGLPEDVVQVAESGVESEEQIKAYAAAGA DVVLVGEALVRHGAPEEALRAFRAASLTVR >gi|289557686|gb|ADCD01000046.1| GENE 59 74231 - 74833 263 200 aa, chain - ## HITS:1 COG:no KEGG:Mlut_10940 NR:ns ## KEGG: Mlut_10940 # Name: not_defined # Def: trp region conserved hypothetical membrane protein TIGR02234 # Organism: M.luteus # Pathway: not_defined # 1 187 1 187 201 146 98.0 4e-34 MRRRTVVLAALAAGALVLLTAGRTWVTATGLSGGIASEATTSGGAAAPVATAMALVVMAG ALALTTARRLGAVIVGVLMALAGVVIASTSVTAALDPATTAAAAVADATGTTALAQDYAV TAWPWVAAAGGVLAALCGVAAAVAGRGWRSSRRYEKTPAASEPGPAAAGEQPAQSAREAA QRRRVDRWTRGTSCPAARPT >gi|289557686|gb|ADCD01000046.1| GENE 60 74833 - 76383 1328 516 aa, chain - ## HITS:1 COG:ML1269 KEGG:ns NR:ns ## COG: ML1269 COG0147 # Protein_GI_number: 15827651 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Anthranilate/para-aminobenzoate synthases component I # Organism: Mycobacterium leprae # 4 513 6 503 529 429 51.0 1e-120 MTAATTPSRAEFLRLADTARVIPVVRTVLADGLTPLAIHRRLAGSRPGTFLMESAAPGAA WSRYSFIGAGSAVTLTSRDGEAHWRGTPPEGLPTQGRALDVLAACLRLLRTDVRAEVGGV LPHLVSGMAGFLGWNTVRAWERLPHPPEDHLGLPDLAMNLVTDLAVHDAMDGTVTLIANA VNGNGLATGADRAYDDALARLDAMVERLAAPAADPVSDVPRRWLEADADEVAAQAEDRWG PEGFREAVAKAQRAIRDGEVFQAVVSRRLSVTTDATGLDVYRVLRMVNPSPYMYLFSFET PDGEPYEIVGSSPEALVTVRDRRVVTHPIAGSRRRGATEEDDRLLGKDLVEDEKERAEHL MLVDLSRNDLSRVCRPGTVEVTQFMELEAFSHILHLVSHVEGRMRDDVDALDVLRAAFPA GTLSGAPKPRALQLLDEWEPTERGPYGGVVGYFDLAGNMDMAINIRSATLHRGQAHVQAG AGIVADSDPDAETAETVTKATAPLRSVLTAGELGQA >gi|289557686|gb|ADCD01000046.1| GENE 61 76380 - 76760 301 126 aa, chain - ## HITS:1 COG:MTH245 KEGG:ns NR:ns ## COG: MTH245 COG0139 # Protein_GI_number: 15678273 # Func_class: E Amino acid transport and metabolism # Function: Phosphoribosyl-AMP cyclohydrolase # Organism: Methanothermobacter thermautotrophicus # 20 123 23 133 138 129 59.0 2e-30 MSISPPDDLVASVTFDDRGLVPAIAQQEGTGEVLMMAWMNEESLRATLETGWATYWSRSR GELWRKGETSGHLQRVRAVHTDCDGDTLLLTVDQTGPACHTGTRTCFTGRELVMAPAAVD PEEAAR >gi|289557686|gb|ADCD01000046.1| GENE 62 76805 - 77575 556 256 aa, chain - ## HITS:1 COG:Cgl2041 KEGG:ns NR:ns ## COG: Cgl2041 COG0107 # Protein_GI_number: 19553291 # Func_class: E Amino acid transport and metabolism # Function: Imidazoleglycerol-phosphate synthase # Organism: Corynebacterium glutamicum # 1 256 1 257 258 299 65.0 3e-81 MSLAVRVIPCLDVDAGRVVKGVNFENLRDAGDPVELARRYNAAGADEITFLDVTASTSDR ATTYDVVTRTAEEVFIPLTVGGGVRTVEDVDRLLRTGADKVSVNTAAVARPEVITEITRR FGSQVLVLSLDARRTEDPGCASGYEVTTHGGRQGTGIDAVAWCREASARGVGEILLNSID ADGTREGFDLEMIRDVRAVTRVPLIASGGAGEPEHFPPAVAAGADAVLAASLFHFGPDDM LARVKDALRQAGHTVR >gi|289557686|gb|ADCD01000046.1| GENE 63 77622 - 78470 650 282 aa, chain - ## HITS:1 COG:MT2181 KEGG:ns NR:ns ## COG: MT2181 COG0040 # Protein_GI_number: 15841613 # Func_class: E Amino acid transport and metabolism # Function: ATP phosphoribosyltransferase # Organism: Mycobacterium tuberculosis CDC1551 # 1 282 1 284 284 278 54.0 1e-74 MLRIAVPNKGALAEAAREILQEAGYRQRRDSRELVLVDPENQVEFFYLRPRDIAVYVGKG TLDVGLTGRDLFRDAQVEGTAEEIMALGFGRSVFRLAAPVGTFASESELAGRRIATSYDG LLHAYLERTGLDAEVVHLDGAVESSVKLGVADAIADVVETGSTLRAAGMEVFGEPILDSE AVLIGRAGERPAGLDVLLRRLKGVLVARRWVMIDYDIRRDLLEAATAVTPGLESPTVSPL RDETMVAVRSMVRKPDANRVMDELYALGARGILISAIHAIRL >gi|289557686|gb|ADCD01000046.1| GENE 64 78525 - 78788 210 87 aa, chain - ## HITS:1 COG:Cgl1469 KEGG:ns NR:ns ## COG: Cgl1469 COG0140 # Protein_GI_number: 19552719 # Func_class: E Amino acid transport and metabolism # Function: Phosphoribosyl-ATP pyrophosphohydrolase # Organism: Corynebacterium glutamicum # 1 87 1 87 87 107 63.0 7e-24 MKTFDELYAELTRKVQERPEGSGTVAQIDAGVHAIGKKVVEEAAEVWMAAEYESDEAAAE EISQLLYHVQTMMIARGINLEDVYRHL >gi|289557686|gb|ADCD01000046.1| GENE 65 78798 - 79283 90 161 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MPVPRRRRRRGRAAQQISAVGPGGVRGSDPPGGVTGVQGAVSSLGSEMSVSCPPVGARPG RLFGPHGRVQPVPPHPLPRGPLGGGSDGRPKDDRVSWIRPGAAMPRARVPMGWKSMQAGE GEDAGRPGRTAWAHRCSAGRRPRRPVRHNDRLRSGLEGPGR >gi|289557686|gb|ADCD01000046.1| GENE 66 79643 - 80017 191 124 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|289705524|ref|ZP_06501916.1| ## NR: gi|289705524|ref|ZP_06501916.1| conserved domain protein [Micrococcus luteus SK58] # 21 124 1 104 104 191 99.0 2e-47 MTAPDALPPLELPSTAEVRWVMSALVQRYFSRETHARLLDADVSGGVLTVVAWQAGPSPA DPGGVIGHRTDLGVRLAECEGDLDAVLLDALQFQVFEPSAPGWAASGAELAWPLERYPEA TWYG >gi|289557686|gb|ADCD01000046.1| GENE 67 80105 - 80383 68 92 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|289705525|ref|ZP_06501917.1| ## NR: gi|289705525|ref|ZP_06501917.1| hypothetical protein HMPREF0569_0865 [Micrococcus luteus SK58] # 1 92 20 111 111 128 100.0 9e-29 MAAYAVAEFAQGSHAPVGAPSLLVSVGQLLAVACSAVCGVRFARSRSPRSRWAWTAAVLA LLVLAAWPVLVGGIGLVEREACEVRPAPFWCE >gi|289557686|gb|ADCD01000046.1| GENE 68 80795 - 81289 356 164 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229248337|ref|ZP_04372384.1| acetyltransferase, ribosomal protein N-acetylase [Catenulispora acidiphila DSM 44928] # 7 162 2 158 173 141 46 1e-32 MTEQVRLRPLSPGDAPEMTRVLADPALYQYTGGEPPTVEGLTRQYTLQSRGHSADETETW LNHVVVFETSGEALGYVQATIPVSGQPAEIAWVIGAPWQRQGYASAAAALLLAELADMGV KQVIAHIHPDHEASAAVARRIGMSPTGEVVDGEVRWEGPVTPRG >gi|289557686|gb|ADCD01000046.1| GENE 69 81522 - 82943 1010 473 aa, chain + ## HITS:1 COG:Cgl1168 KEGG:ns NR:ns ## COG: Cgl1168 COG1253 # Protein_GI_number: 19552418 # Func_class: R General function prediction only # Function: Hemolysins and related proteins containing CBS domains # Organism: Corynebacterium glutamicum # 1 448 2 454 467 400 49.0 1e-111 MDPVLTLILGSLIILAIIAANGFFVAQEFAYMSVDRVRLQTAAKAGDRAAARALQVTRRT SFMLSGAQLGITVTGLMVGYVAEPMVGAALTELLGGTALPSEVVIAISTLGVLVVATLVQ MIIGELYPKNLAIANPEPLARALARPTQIYLGLFGSLIWVFDKAAEVLLKFLRIEPVHDV DSTATAEDLDRIALDSRASGSLPAEVSVLIDRVLDFPDQDVQHAMVPRSRVDEVQPQTSL AQVRDLMATGHTRYPVISNEHEPLGVVHLTDVLGGTRMAPDTPVSALMRPALVLPTMMSL PDAARELDGSGQQMACIVDEFGGFVGVLTVEDLAEELVGELTDEHDLHPQEEITATGLHS WVLSAEAHLDELERLVGHPLPVTEAESAAGLTIDALGRLPREGEVITIDLPEDPRDFGAE EVYDRHLQVEVLSIRRRVPARLRIHLIEVPRSDTAGSHAAHEAQPDATTDEER >gi|289557686|gb|ADCD01000046.1| GENE 70 82940 - 83959 503 339 aa, chain + ## HITS:1 COG:Cgl1167 KEGG:ns NR:ns ## COG: Cgl1167 COG1253 # Protein_GI_number: 19552417 # Func_class: R General function prediction only # Function: Hemolysins and related proteins containing CBS domains # Organism: Corynebacterium glutamicum # 7 336 6 333 336 260 49.0 3e-69 MMHGPLIVMLVTTGLIVLSAIFVIMEFSLLGARRHRLEAEAGRSRAARAALKGVDELTLM LAAAQLGITLCTFALGAITKPAVDAWLGPVLEDWGIPAAAAGTASFVLSLLVVTFLHLVI GEMAPKSWAIAHPEAAAKAVAVPARAFVWSVRPLLLLANRLANRLVTLSGVTPVDQAAVG GYDAAAIRQLVEHSAAAGTLDRQKHETLAGALDLQTLTLGDLLPQGQHPVKVAPDADVEA VQNAAARSGHLRILVQPDHTPESVPGVVHVRDTLTMEPSAPIQPLIQEALTLPSTTPLHE ALASMRRNSRQLAAVTQDDRFTGVVTLTDVLRGVLPRAA >gi|289557686|gb|ADCD01000046.1| GENE 71 83681 - 84313 103 210 aa, chain - ## HITS:1 COG:Rv1150 KEGG:ns NR:ns ## COG: Rv1150 COG3293 # Protein_GI_number: 15608290 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Mycobacterium tuberculosis H37Rv # 14 107 76 169 183 72 49.0 7e-13 MAGARGRPRARPDRLIADTGYPSKAKRAWLRRHSIAATIPERADQIAHRRRRPGRPIDFG GDQRQRYRGRNVVERCFNRLKQWRGIAMRSDKYARSYHAGPCLAATLHWLTTTLWQHALS RAGQHSAQDVGEGDDPSEPVVLGHCGQLTAVAAHGGKCFVQRCGGGQRQSLLDERLDWRR RLHREGVPHVDDARNALRGMVRLDQDTQVP >gi|289557686|gb|ADCD01000046.1| GENE 72 84533 - 84886 179 117 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MDAHDRGIDRGHPIQLASLLCHRLSAREHALPHTLGGPPVEVLVDRVPVPEPLGQIPPRR PRAEAPRGGLDHRAPIHRGPTRGLRGREQRADHGPDLVRDDITRHPSRLAHPKLETL >gi|289557686|gb|ADCD01000046.1| GENE 73 85325 - 85690 167 121 aa, chain - ## HITS:1 COG:Cgl0262 KEGG:ns NR:ns ## COG: Cgl0262 COG0640 # Protein_GI_number: 19551512 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Corynebacterium glutamicum # 20 121 14 115 115 105 50.0 3e-23 MSTTTAITAAGLETMNGPEECCRLSAGPVDSVEAERIAFLLKALSDPTRLRLLSHVAAQG CNSVCACDLTEPLGISQPTVSHHMKKLVDAGLLTREQKGRWAHYSVVPSAFAELRSFLDI A >gi|289557686|gb|ADCD01000046.1| GENE 74 85752 - 86864 852 370 aa, chain + ## HITS:1 COG:Cgl0263 KEGG:ns NR:ns ## COG: Cgl0263 COG0798 # Protein_GI_number: 19551513 # Func_class: P Inorganic ion transport and metabolism # Function: Arsenite efflux pump ACR3 and related permeases # Organism: Corynebacterium glutamicum # 24 361 1 338 345 421 69.0 1e-118 MEGSAPLMSTTTKDVEQPRVMKEMSFLDRWLPVWILAAMAVGLLLGRFIPGLNTALEAVK IGSVSLPIAIGLLVMMYPVLAKVRYDETRRIGADRRLLVTSLVLNWIVGPALMFALAWIF LADLPEYRTGLIIVGLARCIAMVLIWNDLACGDREAAAVLVAINSVFQVIAFGALGWFYL QALPSWLGLPTTSAEFSIGAIVLSVLIFLGIPLVAGFLTRILGERAKGRTWYEERFLPKI SPWALYGLLFTIVLLFALQGDAIISAPGDVARIALPLLVYFVVMFLGSFLLGRAIGLDYA KSTTVAFTASGNNFELAIAVAIGTFGVTSGQALAGVVGPLIEVPVLVALVYVALAMGRRL FPGDTTAPTR >gi|289557686|gb|ADCD01000046.1| GENE 75 86888 - 87316 278 142 aa, chain + ## HITS:1 COG:Cgl0264 KEGG:ns NR:ns ## COG: Cgl0264 COG0394 # Protein_GI_number: 19551514 # Func_class: T Signal transduction mechanisms # Function: Protein-tyrosine-phosphatase # Organism: Corynebacterium glutamicum # 7 134 3 127 129 132 53.0 1e-31 MTTKRPSVLFVCVKNGGKSQMAAALMRHHAGDEVDVHSAGTRPGTAINAQSAEAIAEVGA DMSSAVPQPVTPELLRSVDHVIVIGDEAVIKPVEGMTAPVTTWHTDEPSQRGIEGMERMR LVRDDIDTHVRKLLTDLTGTAN >gi|289557686|gb|ADCD01000046.1| GENE 76 87402 - 88682 684 426 aa, chain + ## HITS:1 COG:no KEGG:Mlut_20640 NR:ns ## KEGG: Mlut_20640 # Name: not_defined # Def: predicted flavoprotein involved in K+ transport # Organism: M.luteus # Pathway: not_defined # 1 426 20 445 445 744 96.0 0 MAAAAHLSERGLPFLILEAGTAAGAAIAEWGHTRLFSPWQYNLDAAAQRLLEAAGWTAPD ADVLPTGHELREHYLEPLAQLPQLAESIRYGARVSAVSRAGIDKTRTARREETPFLVRIE TADGHIDDVLASAVIDASGTWSTPNPLGQAGLLAPGEQQARAAGHITAPLPDVQGRDRDR FAGKRVMVTGAGHSAANTLLDLADLEADTTIMWAARTADLTRVYGGGDQDELAARGALGS RLRQLVDSGRIAVLTSFTITRFRADDTLTVHAVTPDGEREVSVDVLVPATGFRPDLGMLS ELRLALDPAVEAPSQLGPLIDPEFHACGSVEPHGERVLAHPETNFYIVGMKSYGRAPTFL MATGYEQVRSIAAALAGDRKAADAVHLELPETGVCTTDLGGSCDAPAPAGDACCSSPQLT ELSVGR >gi|289557686|gb|ADCD01000046.1| GENE 77 88781 - 89140 197 119 aa, chain + ## HITS:1 COG:Cgl0882 KEGG:ns NR:ns ## COG: Cgl0882 COG0640 # Protein_GI_number: 19552132 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Corynebacterium glutamicum # 1 112 1 112 119 160 77.0 4e-40 MLTIASRVDVMNRLGRAMADPTRSRILMTLLERPAYPAELARDLGLTRSNVSNHLACLRD CGIAVAVAEGRQTRYEIANAHLARALTALVEVTLAVDESAPCLDPACSVPGCCEKGVGA >gi|289557686|gb|ADCD01000046.1| GENE 78 89137 - 89733 320 198 aa, chain + ## HITS:1 COG:Cgl0883 KEGG:ns NR:ns ## COG: Cgl0883 COG4300 # Protein_GI_number: 19552133 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted permease, cadmium resistance protein # Organism: Corynebacterium glutamicum # 7 198 6 198 198 223 79.0 2e-58 MILSSALQAIGLFLVTNIDDLIVLSLFFGRGAGQRGTTVRILVGQYLGFAGILGAAVLVS LGAGAFLPPGVIPYFGLIPLGLGVWAAWQGWRRGEDDDDAKIEGKNVAVWTVAGVTFANG GDNIGVYAPVFLSVGPGAVAAYCIVFLALVAVLVGLAKFVATRRPIAEVLERWEHILFPI VLIGLGFFILVSGGAFGF >gi|289557686|gb|ADCD01000046.1| GENE 79 90086 - 90574 90 162 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|289706328|ref|ZP_06502687.1| ## NR: gi|289706328|ref|ZP_06502687.1| conserved hypothetical protein [Micrococcus luteus SK58] # 25 78 189 242 260 102 96.0 8e-21 MGSSGPPSRGTRRSRRRAKPPPIGSDYRDHIAPKDQTVAVEERRETGLLLTPLVPARSIV PKARLACDWLGRYEKGEPPSPGPRSGDPRRTGNSLGPDQRVRAPGPAWGADRGAERAGAR SDPRRGASKGRNEPGNARPSSSHRGLGPPAPDALTGATGRGV >gi|289557686|gb|ADCD01000046.1| GENE 80 90507 - 90722 86 71 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MGGGFALRLDRRVPRLGGPDEPIHDGERLPAFRTGTADRPALTPTGPWDRVPVKSSRLTR QPRPATLSPAA >gi|289557686|gb|ADCD01000046.1| GENE 81 90706 - 91188 369 160 aa, chain - ## HITS:1 COG:ML0560 KEGG:ns NR:ns ## COG: ML0560 COG0054 # Protein_GI_number: 15827211 # Func_class: H Coenzyme transport and metabolism # Function: Riboflavin synthase beta-chain # Organism: Mycobacterium leprae # 16 141 15 141 160 133 59.0 1e-31 MSGAGAPTFTPDPAAASGLDVAIVAAQWHTEIMDGLIAGAQAAAADLGLNPALVRVSGTV ELTVAAARLAERFDVVVVLGVVVRGDTPHFDYVCQSVTQGVTEVSVRTGVPVGFGVLTVD TEQQARDRAGLPGSREDKGREALEAAVLTELALRSVTPRD >gi|289557686|gb|ADCD01000046.1| GENE 82 91185 - 92498 918 437 aa, chain - ## HITS:1 COG:ML0559_1 KEGG:ns NR:ns ## COG: ML0559_1 COG0108 # Protein_GI_number: 15827210 # Func_class: H Coenzyme transport and metabolism # Function: 3,4-dihydroxy-2-butanone 4-phosphate synthase # Organism: Mycobacterium leprae # 1 201 8 210 215 204 58.0 4e-52 MSEHIRLDPVPAAIAAIAAGRPVVVVDDADRENEGDLIYAAALAADEVTAFTVRHTSGVI CAPMPAPWADRLELPPMTTVNEDPKGTAYTVSVDAAAGVTTGISAADRTQTLRVLAGEES TPGDLTRPGHVFPLRAVPGGVRARRGHTEAGVELCRLAGVAPVAAIAELVHDDGTMMRLP ALREFSDEHGLALISIEDLVAHLEETTPALTAVPAEATLPTRHGLFRVSVHVDAETGAEH LLLVAGETDPERPLTVRVHSECLTGDVLGSLRCDCGPQLEDALARAATEGGAVLYLRGHE GRGIGLANKIRAYRLQEEGMDTVEANLALGLPAEARDWAGAAAVLTAAGHRRIRLVTNNP AKVAGLRAAGIDVVERVPAPTPVTEHNVVYLRTKRDRMAHALADRVLAPPTATGGPATPV DDPTTDPTHPTHQEDTP >gi|289557686|gb|ADCD01000046.1| GENE 83 92495 - 93151 450 218 aa, chain - ## HITS:1 COG:Cgl1558 KEGG:ns NR:ns ## COG: Cgl1558 COG0307 # Protein_GI_number: 19552808 # Func_class: H Coenzyme transport and metabolism # Function: Riboflavin synthase alpha chain # Organism: Corynebacterium glutamicum # 1 214 1 204 211 157 44.0 1e-38 MFTGIVTHLGTVVSLEHDAAADTALLTLDAGGALDGLPAGGSLAVDGVCLTALDGPAERP GVFRADLMGQTLRMTSLGDRAPGDRVNLERCLRPTDHLDGHVVQGHVDGTGEVLAVTPHG AWTTLRIGLPARLARYVPAQGAIALQGVSLTVTAVSDPGAAAHWFEVGIIPATLEATTLG VLRPGDRVNLETDVLARYAERLALIPSAPAAPTEEARP >gi|289557686|gb|ADCD01000046.1| GENE 84 93152 - 94285 783 377 aa, chain - ## HITS:1 COG:MT1453_2 KEGG:ns NR:ns ## COG: MT1453_2 COG1985 # Protein_GI_number: 15840867 # Func_class: H Coenzyme transport and metabolism # Function: Pyrimidine reductase, riboflavin biosynthesis # Organism: Mycobacterium tuberculosis CDC1551 # 152 342 9 190 203 125 42.0 2e-28 MSTAETPSADPMDLAVRAALRGVRGANPLVGAVLTDEAGRVLAVGHHRGRGTAHAEVDAL TRWRAARAADPALAALDPAGLTLHVTLEPCDHTGSTGPCSQAVLDAGIGALRYAVADPTG HDGGGAARLAAHGVRVTGPTGEAAALALSARWREVRDAGRPWVTGHLAQSLDGHAAAADG TSRWITGPDSRLHAHEVRSRVDAIVVGTGTVLADDPRLTARDAAGAELAHQPVPVVQGHR PVPDGVALRRHPVVLEVPDHDPHAVLAALAAHPGPWPHGRRAEHVLIEGGPRVLGAWLRA GLVDELMVYTAPLLLGPGRAAVAGLGVATLSEGLRWHSDPAEGGPVRVLGDDVWTHLSPV PAPHLPTAPAPTRFQED >gi|289557686|gb|ADCD01000046.1| GENE 85 94282 - 94986 663 234 aa, chain - ## HITS:1 COG:Cgl0064 KEGG:ns NR:ns ## COG: Cgl0064 COG3201 # Protein_GI_number: 19551314 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinamide mononucleotide transporter # Organism: Corynebacterium glutamicum # 1 217 1 218 230 197 55.0 2e-50 MDWLVDAFNWTIPVAGGGLLMREVLGNVFGLASALGGMARRVWAWPVGILGNLILLTVFL ASLFTGADHATLLGQAGRQVMFIAVSVYGWARWRQARRGHAEDAPAITPEWAGWRGRVFL VTAMAVGTVALTPVFRALGSWEPVWADAWTFVGSLLATYGMARGWVEFWLIWVAVDVVGV PLLWSTGYYASAVMYAFYGAFTLIGFFVWLRATDRDKPAVETLLPDGPEGDVAR >gi|289557686|gb|ADCD01000046.1| GENE 86 95308 - 95979 579 223 aa, chain - ## HITS:1 COG:Rv1408 KEGG:ns NR:ns ## COG: Rv1408 COG0036 # Protein_GI_number: 15608546 # Func_class: G Carbohydrate transport and metabolism # Function: Pentose-5-phosphate-3-epimerase # Organism: Mycobacterium tuberculosis H37Rv # 5 221 10 226 232 241 61.0 6e-64 MTAHAPRLHPSILSADFARLADELARIPSADAVHVDVMDNHFVPNLTLGLPVVEAIRRAT DLPLDLHLMIEDADRWAPGYAEAGAESVTFHAEASAAPVRLARELRAAGAKAGMALRPAT AVEPYLDMLPELDMLLLMTVEPGFGGQAFLDVVLPKIRRARRALDGGPVPLALQVDGGVN RETIERAAEAGADVFVAGSAVFGAEDPDAALVGLRTAAARACH >gi|289557686|gb|ADCD01000046.1| GENE 87 95996 - 97627 1235 543 aa, chain - ## HITS:1 COG:Cgl1561 KEGG:ns NR:ns ## COG: Cgl1561 COG0144 # Protein_GI_number: 19552811 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA and rRNA cytosine-C5-methylases # Organism: Corynebacterium glutamicum # 48 539 59 509 511 306 45.0 9e-83 MSREGQPGRGRGERGARGERGRAPRSDAQDRRDAQGRTRNRGRSGAGRKYSAQAPSQRSR TSDPARRVAFGVVRAVHAEDAYANLVLPARIRQARLDRRDAGFATELAYGTLRGLGLYDA ILTRCVDRPLEKIDPPVLDALRLGAHQLLGMRVPAHAALDATVSLVRAEIGAGASGFVNA VLRRVAERPLEEWLADVAPADGGDAALAVRASHPVWIVRALRQALAAHRGTRHIADRDAE LAALLEADNAPPVVNLVALPVAGGAEALAAALDDGAEPGRLAPDSALHSGGDAGRLPGVR EGVLRVQDAGSQLTARALAQAPVPAAAGRAERWLDLCAGPGGKAALLAALAAERGATLVA NEVAPHRADLVRQALAAVPADAWTVRVGDGRTIADAPEAASAFDRVLVDAPCTGLGALRR RPESRWRRTPADLAELTGLQAELLDAAVTVLAPGGVLAYVTCSPHVAETVVQVQDLVRRH PELELLDAGTALDAVALDDLRLDEAEPAGGPEPGDVVAHTAQLWPHRHGTDAMFLALLRA PGA >gi|289557686|gb|ADCD01000046.1| GENE 88 97624 - 98724 794 366 aa, chain - ## HITS:1 COG:Cgl1562 KEGG:ns NR:ns ## COG: Cgl1562 COG0223 # Protein_GI_number: 19552812 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA formyltransferase # Organism: Corynebacterium glutamicum # 7 320 1 305 315 190 40.0 4e-48 MTAPTPLRVLYAGTPETAVPVLRALLDSPHEVVGVLTRPDAPVGRRRVLTPSPVAVVAEE AGLPVLKADRLRGPEGADALQAMRALEADVAVVVAYGALVPAEALQIPRHGWLNLHFSAL PAYRGAAPVQRAVMAGETEIAADVFQLEEGLDTGPVFARLTRPVAADETAGAVLTDLAER GGPLVIDVLDRLADGTATATPQRGAPTHAPKLTAADGLVDPARPAAEVAARINGVTPEPG AWGWLTAGDGAAPARFKLDGVAPVRAGDDGWPPALDAAVPGQILVAAKAAWLRTAGGAVR LSRVQPAGRKLMPAADWARGAAAGAALLAGEELADHEAQVRQEAAARAAAREAARNTAAQ DEEARA >gi|289557686|gb|ADCD01000046.1| GENE 89 98721 - 99197 349 158 aa, chain - ## HITS:1 COG:Cgl1563 KEGG:ns NR:ns ## COG: Cgl1563 COG0242 # Protein_GI_number: 19552813 # Func_class: J Translation, ribosomal structure and biogenesis # Function: N-formylmethionyl-tRNA deformylase # Organism: Corynebacterium glutamicum # 1 125 35 163 169 117 51.0 6e-27 MIATMHAVGGVGLAAPQVGVGLRVFVFDVAGVAGHVVNPVLETAGQALREPGEGCLSVPG LRYHPARAAEAVVRGTDVDGNPVEHRGTGLLARCLQHETDHLDGILYVDRLDGEERREAR RRMRAGEVDRAARRIGAARAAAVSSAFGAPAAGTGAAR >gi|289557686|gb|ADCD01000046.1| GENE 90 99293 - 100282 821 329 aa, chain - ## HITS:1 COG:no KEGG:Mlut_10780 NR:ns ## KEGG: Mlut_10780 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 329 1 329 329 546 99.0 1e-154 MTQPRLAHQTPHGRMYARSLSGLPEVPSITTVIGMEKTDLDGWVGWMAAQSVTQDPRLAE SVGSAARLKQVARQSADAAARYRDAAAERGDRVHDYAEQVAQRALGRPHTMAEARARLIE HGEGAYADRFDEWWDLYDVRPIAAEITVWNHTVGYAGTLDLVARIGGRLCLIDYKTKGTG RDGRVKALDPKVVMQLTAGLKAEESLVDPEAGTWEEWRHGQAEMLLGVALGETEVAVHQA NPGVLPRHWHKFWALRQVWRHAQAVDDAGPALRVIGPPPPSVPASAATGLQAVRAAAFGG GSHAAPDVAPDGSSSRPASAAEGGDRVTA >gi|289557686|gb|ADCD01000046.1| GENE 91 100936 - 101763 528 275 aa, chain - ## HITS:1 COG:Rv2895c KEGG:ns NR:ns ## COG: Rv2895c COG2375 # Protein_GI_number: 15610032 # Func_class: P Inorganic ion transport and metabolism # Function: Siderophore-interacting protein # Organism: Mycobacterium tuberculosis H37Rv # 22 269 5 260 283 77 32.0 2e-14 MKAYRGLAALGQAMPVDRDEYPQWTMTVRATWLLAPRLRRLTFAAEEFRTFTPQGCDEYF GLLTPPPGRALVMPDPAALNARRAVGRIPEDVRPDLRWYTVAEHRPSVGEIDVDVVVHDH AGPAGTWARTARPGDVAGFRTGTGAYRLPAAGESHLVVGDETAVPSIAAALAAQRRTPRG GRMDVVLEVPGRDHVPALEVPEGATLTVLHRGDAVPGALLTPHLEDLPAAPRDHVWACGE QSLATAARRVIVRRGIAPKRAIMFSGYWRVDGPRL >gi|289557686|gb|ADCD01000046.1| GENE 92 101988 - 103583 998 531 aa, chain + ## HITS:1 COG:YPO1529 KEGG:ns NR:ns ## COG: YPO1529 COG0076 # Protein_GI_number: 16121802 # Func_class: E Amino acid transport and metabolism # Function: Glutamate decarboxylase and related PLP-dependent proteins # Organism: Yersinia pestis # 14 472 37 500 515 342 40.0 1e-93 MLPRLFGLGDPAAYLDATGRAARVAVDTAYDRAGVHPDTPSTHLADAVGAVNFSQPTGSL DDALAEVAELYAHQTTAYHHPRYAAHLNCPVLLSSTAADTVLGALNTAVESWDQARSAAL MEQRLLAEVGRWCGFAAGDGVFTSGGSASNLQAMTLARGRAVQRLTGHAGLADLPAEVLG SLRVFVSAATHYSIAKAAGLLGLGRHAVVVVPTDAAGRLDPGALAEAVEREVAAGAVPMA VVATLGTTDRGAIDPLPAIADVAERHGMWVHADAAVGGILAASAATRHELPGLHRADSVT MDFHKTFYVGLACSALVVRDAESLRHVTVHADYLNPEDSVHPNLADRSLQTSRRFDSLKL WLTLREHGAEAVVSLFAGARERTRQACGILRARPTFAVLEDPTLVTVLFRVRAEGLSEEE CTAVQAATHRELVAGGRALIATTVVDGVPHLKFTILNPAVTSGELEELVDVVEEAALRHV DAVRASRHRWRGVARTRPHGPSVAVSCTLPASAGPRPSAARVDEHGERVCA >gi|289557686|gb|ADCD01000046.1| GENE 93 103580 - 104905 1009 441 aa, chain + ## HITS:1 COG:all0392 KEGG:ns NR:ns ## COG: all0392 COG3486 # Protein_GI_number: 17227888 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Lysine/ornithine N-monooxygenase # Organism: Nostoc sp. PCC 7120 # 11 436 8 426 427 291 38.0 1e-78 MSPASTSPRRVLAIGLGPFNLSLAALAHPLPDVEVEVVESRDAFVWHPGMMLPGAQIQVP FLADLVTFADPTSPYSFLAYLKAMGRLHRFYIRGSWYPLRREFSDYCAWVAAQLPGIAYA TTVTAVRWDDQADEFVVEAASAAGTSTHRADHVVVGTGTVPSLPAPLARVAEESARVGAS PVVHTGEYMGRREDIAGAGSVLVVGSGQSAAECALDLLNAGHPDLTWVTRSPRFFGMEVG QLTLELTSLDYERHFATLPRARRDEINASHRSLYKGISEYTIEDVYHALYERQVGPLDPA RLWPGTSVTDARLVAGPGAPRVEVTLRDEETGVTGRHVVDRVVAGTGYRHPDHPFLEPVR HLLRAEDGRTTANADHAIDVSGRRIFVHNTAEQPLGLTGPDLGMAAEHSGRILSTIAGRE VYAQAESIAFQDFGAVAAGVR >gi|289557686|gb|ADCD01000046.1| GENE 94 104965 - 105555 423 196 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229250974|ref|ZP_04374998.1| acetyltransferase, ribosomal protein N-acetylase [Catenulispora acidiphila DSM 44928] # 1 177 2 183 183 167 48 3e-40 MELRPVGAQDHPLLHRWVTSPHAVYWEMTEAGLADVVAEYEAIAAHPHHHAHVGLVDGTA TFLVEVYDPAHSELAGRYAGAPGDVGLHVLVAPTDTPVPGTTDLVMAAVVRWCLAQPGAR RVVVEPDERNAAIRAKNLAAGFTELGPVALGSKTAMLSIATPESFAVSRIGVLAAGLDLT LPEPPLLLTPDRHVSA >gi|289557686|gb|ADCD01000046.1| GENE 95 105552 - 107387 1318 611 aa, chain + ## HITS:1 COG:YPO1532 KEGG:ns NR:ns ## COG: YPO1532 COG4264 # Protein_GI_number: 16121805 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Siderophore synthetase component # Organism: Yersinia pestis # 1 594 3 606 614 395 37.0 1e-109 MTTVPPSSPSRLDALTAPTARRAHRLLVAKAIREFTHERLFAPVRGARVDDAGRHAYTLT LGGVRWTFTARALPLEHLGVDPDSVCRAGDPDAVAVDRFVLDAAEVLGLAGEALDVYLEE LASTFAARCHTLAGERPSAADLVDADYTTVEAAMSEGHPGFVATNGRIGWGAAEYAMFAP EGGQALHPVWLAFPSELGGRWTWPETASAGAAVPALPAPITEAVAGLWAKRAAALDVDPE AYTLIPVHPWQWEHRIQVAFAPDLAAGRLVHVGEDPDAFTAMQAVRTLFNASDPHAPQLK TALSVQNMGFVRGLSPAYMSVTPAINAVVADLVDSDPLLAGWGFGVLREYASAGYTGDAF HAVGSKGPRTKMLAALWRESPLPRLAEGERVMTMAALLHRDGEGRSVAGALVERSGLTAA QWLHGVLTAYVTPLVHLAAAHSTVFMPHGENIVLRLREGRVTGAFLKDIGEEVVVGADGV PLTEQTRRIRIDLTDEDLSLSFFTDMLDGVLRHLADVMDADALLPAEEFYAVVGRVLAEY TALGVADVGRLGLDAEDFAHSCLNRLQLRNATQMVDLTDPSGSLLYAGRLANPVAAPLRR ALAELRQDAAA >gi|289557686|gb|ADCD01000046.1| GENE 96 107456 - 108550 949 364 aa, chain - ## HITS:1 COG:MT2744 KEGG:ns NR:ns ## COG: MT2744 COG1485 # Protein_GI_number: 15842208 # Func_class: R General function prediction only # Function: Predicted ATPase # Organism: Mycobacterium tuberculosis CDC1551 # 19 352 26 359 369 300 49.0 3e-81 MARNPRRRPWECPVAQIVHLADRSPQVTPDQLLAGFHPSYRFGTVSFDTYIPDPAHPSQA QAVERLRRFAADLGRGGSGGGFLGGLFGGKKRAAGPAGIYLDGGFGVGKTHLLASTWHAA PGPKAFGTFVEYTNLVGALSFRKAVDQLKEYTLVCIDEFELDDPGDTVLMSRLMRELADA GVRLVATSNTLPGSLGEGRFAAQDFKREIQVLADQFEVIRVDGEDYRHRGLSAAPSPLDD AAVEATAQENFPDAGVLAVDDFADLTAMLSRVHPSRYRELVKDVDVLALHDVHTITEQAT ALRFVVFADRLYDKDVPVLASGVPFDALFTQEMMHGGYMKKYFRTVSRMTALVREGQTGV AEHK >gi|289557686|gb|ADCD01000046.1| GENE 97 108552 - 108812 85 86 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVGDPLRGHQLLGVGVLGELRGGIGHGTAFLRVGAGPHGPGAGGTTTAGSVSVPCAPDYG TSVSRKRVGAPQSGTREVTWVGSTAR >gi|289557686|gb|ADCD01000046.1| GENE 98 108735 - 109628 882 297 aa, chain + ## HITS:1 COG:MT3382 KEGG:ns NR:ns ## COG: MT3382 COG2897 # Protein_GI_number: 15842874 # Func_class: P Inorganic ion transport and metabolism # Function: Rhodanese-related sulfurtransferase # Organism: Mycobacterium tuberculosis CDC1551 # 3 295 6 295 297 372 61.0 1e-103 MTDTAAKFSEYAHPEKLVSTQWVADHVGDEDVVVLESNEDALLYSTGHIPGAQRVDWHTE LNDPVSRDFVGPEAFAELAASKGISRDTTVVFYGDKSNWWAAYALWVFTLYGHEDLRLMD GGRDKWIAEGRETTREVPTVARAEYPVIERDDHTERAAREDVLKAIGTTPLIDVRSRPEY TGETTHMAGYPQEGTLRGGHIPTAASVPWASAANEDGTFKSRAELEQVYRTGAGLQEGDD VIAYCRIGERSSHTWFVLKYLLGHEDVRNYDGSWTEWGNAVRLPIAVGEEPGEAPAR >gi|289557686|gb|ADCD01000046.1| GENE 99 109665 - 110123 462 152 aa, chain + ## HITS:1 COG:MT3383 KEGG:ns NR:ns ## COG: MT3383 COG2166 # Protein_GI_number: 15842875 # Func_class: R General function prediction only # Function: SufE protein probably involved in Fe-S center assembly # Organism: Mycobacterium tuberculosis CDC1551 # 1 147 1 141 143 124 57.0 6e-29 MTENHAVPAALAEIIDDFAGVPDPEKLELLLEFSDELPALPERYDGHEAEMEQVVECQTP LFLAVELEGEPGPQAPVRLFITAPPEAPTTRGFASVLTQGLDGLSALEVLDVPEDIPTRL GLAKALTPLRLRGMSAMLGRIKRNVREQAGIA >gi|289557686|gb|ADCD01000046.1| GENE 100 110131 - 110649 219 172 aa, chain + ## HITS:1 COG:HI1434 KEGG:ns NR:ns ## COG: HI1434 COG2606 # Protein_GI_number: 16273339 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Haemophilus influenzae # 16 169 2 155 158 121 42.0 8e-28 MGQRKKDRGARHGAATPAVAALEAAGVPYRLHTFDVALDAGGERFGVQVARALSVPAERL FKTLMVADPDGALAACVVPVSGQLDLRAAAAVLGVKRLALADLAVVERRTGYVRGGVSPL GQRRPHPVVLDSSALDAELMYVSGGQRGLDVEIAPADLVQVTGAVVAEIAAG >gi|289557686|gb|ADCD01000046.1| GENE 101 110674 - 111285 576 203 aa, chain - ## HITS:1 COG:ML0454 KEGG:ns NR:ns ## COG: ML0454 COG0558 # Protein_GI_number: 15827145 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylglycerophosphate synthase # Organism: Mycobacterium leprae # 6 195 8 199 239 142 47.0 4e-34 MLDRHARDLTTRLFTPVARTLLRAGVSPDTVTVVGTLGVSLGALVLFPLGHLFWGTLFIT AFVFSDLVDGIMAREAGSTGRWGAFLDSTLDRVQDAAVFLGLCLWGFGVGAAPAVGALSG ACLALGMLVSYVRAKAEALGWNAHVGIAERAERLVATLVVAGLTGLGLPPVVLAVTLGLL AAASLVTVGQRMAVVRRQARDDS >gi|289557686|gb|ADCD01000046.1| GENE 102 111285 - 111965 562 226 aa, chain - ## HITS:1 COG:ML0455 KEGG:ns NR:ns ## COG: ML0455 COG0537 # Protein_GI_number: 15827146 # Func_class: F Nucleotide transport and metabolism; G Carbohydrate transport and metabolism; R General function prediction only # Function: Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases # Organism: Mycobacterium leprae # 14 198 4 192 206 154 43.0 1e-37 MTSPGTGGSDARAQARASADAAAMDGFELPGAPDAFERFWNAHRMAYVSKGTGQVKDEHT CPFCAAPQRDDEDSLIVHRGRTAYVVLNLYPYNPGHLLVCPYRHVPLYTDTTTEEAAEMA ELTQTAMLALGQAADASGYNLGMNQGAVAGAGIAAHLHQHVVPRWTGDGNFLPIIARTKN MSQTLGETRQILADVWDRAAQDHAARQAANARAAAEHPRPGAGDPA >gi|289557686|gb|ADCD01000046.1| GENE 103 111962 - 114046 1963 694 aa, chain - ## HITS:1 COG:Cgl1631 KEGG:ns NR:ns ## COG: Cgl1631 COG0441 # Protein_GI_number: 19552881 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Threonyl-tRNA synthetase # Organism: Corynebacterium glutamicum # 47 690 29 672 686 837 64.0 0 MGRGRRWPPYATDPEARPRRSTVSEPKNILLTVDGELREVTHGTTGLDLFREKPTTAVMR VDGLLWDLAREIPAGASVESVDITEPEGLEVLRHSTAHVMAQAVQQLRPGAKLGVGPYIT DGFYFDFDVDEPFTPEDLKQISSLMQKIVKSGQTFRRRVVDEETARAEMADEPYKLELLG KKDAADTAGEGASVEVGAGEITVYDNVDRKTGDAVWCDLCRGPHLPSTKLIGNGFALTRS AAAYWLGNEKNKQLQRIYGTAWASKDDLKAYQERLAEAERRDHRKLGAELDLFSFPDELG SGLPVFHPRGGIIRKEMEDYSRRRHTEAGYEFVYTPHITKQHLYEVSGHLDWYADGMFPP MHIDEVRDPETGEITRQGQNYYLKPMNCPMHNLIYRSRGRSYRELPLRLFEFGSVYRYEK SGVVHGLTRVRGMTQDDAHIYCTREQMKEELTTTLNFVLDLLKDYGLNDFYLELSTKDPE KFVGSDEIWEEATRTLAEVAEASGLQLVPDPGGAAFYGPKISVQARDAIGRTWQMSTIQL DFNLPERFDLEYQAADGTRQRPVMIHRALFGSIERFLGVLTEHYAGAFPAWLAPEQVVAI PVAEAFNDYLDDVVAKLRAEGIRARLDDSSDRFPKKIRTAAKEKAPFVLIAGGEDREANA VSFRFRDGTQDNGVPVEEAIERIVKAVREREVTP >gi|289557686|gb|ADCD01000046.1| GENE 104 114090 - 117788 2852 1232 aa, chain - ## HITS:1 COG:PA0669 KEGG:ns NR:ns ## COG: PA0669 COG0587 # Protein_GI_number: 15595866 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit # Organism: Pseudomonas aeruginosa # 12 1116 9 1004 1031 371 30.0 1e-102 MSRAAAAGRDAAPFAHLHVASAFSAHYGVSWPEDLVAAAAAADMDLLACTDRDGLYGMAK HVGACLRHGITPIVGVDLAVRWSEDEEAGRVVVLARGGCHGSGYRSLCELVSAAHARTTG GAAGGSPWASVAELAAAAAGRVPTAANRDNPPTPELFVLLGPDSDVGRHLARRRYAAGLT ALRRWKAALPAGSPHADVVTHLSAPGRRLDTGHAVKTLRAARQARIPAVLTNAVRYAAPD GAATADVLDAVRALSSLDALHDLQPNGQGWLKSTAAMHRIAHEIAFAADDRPAPLLEATR RLAEACALDPETDLGWGVPRVPEAAVIGIDGPPEHVLRERTRTGLLARYPHLHTGGGLPG TSQAARDLQDRAEHELGIITRLGFSSYFLTVAAVVDLIEGMGIRVAARGSGASSLVNHAL RISHVDPMANGLIMERFLSTDRSTLPDIDIDVESARRHEIYHAVVERFGAERTTLMSMQN AYRARGAVRDAGLALGMPEPEVDAIAKQLWRFSASNFREALQRMPELGGLSRRIESGRAE GDRQLDLLVDLTERLDRLPRHISMHPCGVILGDATLLHRTPVQPSGMGLPMSQFDKHDMD PMGFLKLDILGVRMQSAIAYTIAEVERTTGERIDLEQVPLDDPATYAMIRTTHTLGCFQI ESPGQRELVGKLAPREFNDLTVDISLFRPGPMQSDMVRPFLEQRHGWAPAHYPHPDLRPV LAETHGVTVFHEQVLRTMDVMTGCGLARADEHRRLLGGPQEHLVEEAFRTGALARGYSLD VIDEVWATLSAFGSFGFCKAHGAAFAVPTYHSAWLKTHHPAAFMAAILEHDPGMYPARLM VAEARRMGIPVLPVDVNASSRHVHVEWVPAHPEVDDGAPGRWGIRLPLTSLSGLSEAETD RLDAGRPYRSLADVRDRARPTARNLERLAQLGALDCLLPPGGASRTDLVHHLELQHSTTR GTAPGRTAPRSRSARPRQVEGQLALDLPDTELTALAPLFPEPGPAARVRTELELTALDVT AHLMDSHAPYLDALGVTRAKDLLGLRTQSRVLVAGVRVATQTPPMRSGKRVVFLSVDDGT GCVDASFFTEAQHASGEMLFSARLLLIEGTVRRTGDRAVSVQAVRAWDLHRPETLPDPDY LDATRQQWRDWLAADRRAAAARRSGRAGTGAQSLPDIPHHGTGGWPVKVRTDVGPAGGAR PGRTAPDRPAPEHTPIPVPHPETWELLPTPDR >gi|289557686|gb|ADCD01000046.1| GENE 105 117785 - 118111 224 108 aa, chain - ## HITS:1 COG:no KEGG:Mlut_10650 NR:ns ## KEGG: Mlut_10650 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 108 1 108 108 181 98.0 6e-45 MGVLTQSVAVECGADGTPQGLRWNGRDYVLAERPVRWFERRRWWAEEVRAEKGRGAGLVD HEMWRLQVRLARVGAAPLQTLDVAHHLDSGRWRLVRVHEHAQDLRRSA >gi|289557686|gb|ADCD01000046.1| GENE 106 118401 - 119312 554 303 aa, chain + ## HITS:1 COG:no KEGG:Mlut_10640 NR:ns ## KEGG: Mlut_10640 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 63 294 1 232 239 256 68.0 7e-67 MHEKIVSWAGRSAPARSCGQCEQDHNPSAYTPNQPGLACHEHRAAGSAREARTHDGRPVG GEMSLTAPGRALRRHRFAQAGTLSVALALALTACGGQSEPAESSTTSPSSAKPAVETSAP ASTSETAGVSSSPTATTSESGEYVPASADGPARNVPKPEMPAAMKEETKEGAEAAIRYFW DAHYYAEQTGDTELLDSLYSEYCEFCQFSSHDLQMIYKDGGWYTGTEVQIDSILTHRSET GYVSTLLVTTGTGTGYAKGGVVPENGDVEAASEQPWIAEVSFNPESSHWIVDEMSYEGSI GSN >gi|289557686|gb|ADCD01000046.1| GENE 107 119312 - 120262 422 316 aa, chain + ## HITS:1 COG:no KEGG:Mlut_10630 NR:ns ## KEGG: Mlut_10630 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 161 316 1 156 156 293 98.0 7e-78 MGRIWIALVALSISLMFVPATAAATPSHAQDIESCTSSKSHYSINKKGIAANKRCSDRHS SISSSVVATDGSATADRPDPRLEHKTVSACFSGQLGNPDFESCREQEANFCPEGSWIRAQ TTDTRQPDANPVYGAPKCWTAKASSNGAPPVSIDEVRTLLVLEPEIRSDNGGRGIRNAET NFYADAETRTLVTTLNGVEVELRATPVSFHWDYGDGSPTKTTSVAGQSQPEFNVPTPTSH VYEDTGQYTVRLTTVYIGEYREAGGEWVLIPGTISLDSAPVTANIWRTITRNVADDCSVD SSAWGCTGPIESAPAG >gi|289557686|gb|ADCD01000046.1| GENE 108 120331 - 121032 335 233 aa, chain - ## HITS:1 COG:no KEGG:Mlut_10610 NR:ns ## KEGG: Mlut_10610 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 108 6 113 124 172 82.0 1e-41 MAAALYDEAAGTPEGDIGPSAGLVYAWGEHSLADPVFGDYPERFPTLEHAEPGVLLPFRS EGLGDDAAVAELSWGPRWGALWRDTTLDFFTGFHYLADATYPTDDRLVLDWSLDGVTKSE DVIITQDAERSDLYARVESLADGQKPRALNMPAGEDAPSPGEADPVPPAEQEPVDTPAPV AGEEPGEGTGGEETHTTPDTVETGRDVPAGALGALAALGAGLVLLTRGRARRV >gi|289557686|gb|ADCD01000046.1| GENE 109 121140 - 121997 602 285 aa, chain - ## HITS:1 COG:BS_yoqW KEGG:ns NR:ns ## COG: BS_yoqW COG2135 # Protein_GI_number: 16079108 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 1 275 1 222 224 116 28.0 4e-26 MCGRYVMARATSDLVALGDAETNEDLVLRQSWNVAPTAEVPILVAHVDDVGAGGSRGGDR GAGAGVTRRIHVARWGLVPPWAKELSVGSRAFNARSETVASKPTFRAAVRARRCAVPVEG YYEWKTPEPGAKGPDGRAAKKQPYYVHPAGAGDGEGPVIWFAGLYEWWQDPEAQAAGEDA WVLSTTILTMAAPDADDDDPVLAALGQLHDRMPVPMDAETMDRWLTPDTLGSAEEADALV GQVCAGAYDVAAGWSLRPVGSAVGNVRNNGPELTQEMGEQQGTLL >gi|289557686|gb|ADCD01000046.1| GENE 110 121999 - 122256 89 85 aa, chain - ## HITS:1 COG:no KEGG:Mlut_10590 NR:ns ## KEGG: Mlut_10590 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 14 85 17 88 88 99 77.0 4e-20 MRTEGRTVARDGIDEDEANAAPAGADTLTQWRIPLVGLLIGVGLGVVFGLGTERPWGSVT GWASMGFALGIAWMYVERGRDGRDR >gi|289557686|gb|ADCD01000046.1| GENE 111 122469 - 123533 972 354 aa, chain + ## HITS:1 COG:MT2320 KEGG:ns NR:ns ## COG: MT2320 COG1062 # Protein_GI_number: 15841751 # Func_class: C Energy production and conversion # Function: Zn-dependent alcohol dehydrogenases, class III # Organism: Mycobacterium tuberculosis CDC1551 # 3 354 13 361 361 466 68.0 1e-131 MAKDAPVTIETIVIPDPGPGEAVVDIKTCGVCHTDLHYQQGGIGDEYPYLLGHEAAGVVS AIGEGVDHVKVGDTVILNWRAVCGECRACRKGEPKYCFNTHNATQKMTLEDGTELSPALG IGAFADKTLVHAKQCTQVDGVDTPEEQAAVGLLGCGIMAGIGAAINTGEVKRGESVAVIG CGGVGVAAIAGAKLAGATTIIAVDIDAKKLAKAEELGATHTVNSKDEDPVEAIRAATGGF GADVVIEAVGRPETYEQAFYARDLAGRVVLVGVPTPGMELKLPLPEVFGRGGALKSSWYG DCLPERDFPMLVDQYRLGRLPLDEFVTETIALDEVNEAFETMKSGDVLRSVVVL >gi|289557686|gb|ADCD01000046.1| GENE 112 123533 - 124189 543 218 aa, chain + ## HITS:1 COG:MT2321 KEGG:ns NR:ns ## COG: MT2321 COG0491 # Protein_GI_number: 15841752 # Func_class: R General function prediction only # Function: Zn-dependent hydrolases, including glyoxylases # Organism: Mycobacterium tuberculosis CDC1551 # 1 218 2 212 212 233 57.0 2e-61 MARIDHLVTSGTFSLDGETFDVDNNVWIVGGAEQCVVIDPAHDASAVWKKVNGRQVLAIV LTHGHDDHIRQVQEFRQMVDAPVLLHPADRMLWDDVFPDEEPDGALAEGDVLRVAGVELR VLHTPGHSPGSVCLYAPALGEAGDDGAPTGVVFSGDTLFQGGPGATGRSYSDFDTIIESI RERLFPLPEATVVHTGHGDSTTIGTEKPHLQEWIDRGH >gi|289557686|gb|ADCD01000046.1| GENE 113 124222 - 124842 340 206 aa, chain + ## HITS:1 COG:no KEGG:Mlut_10560 NR:ns ## KEGG: Mlut_10560 # Name: not_defined # Def: uridine kinase # Organism: M.luteus # Pathway: Pyrimidine metabolism [PATH:mlu00240]; Metabolic pathways [PATH:mlu01100] # 1 205 1 205 206 347 98.0 2e-94 MTILPASPPPSVILLGGASGSGKSYLARRHGRPHLSLDAFYRPQSDDGAAGGPGPVFPRT PYGEIDWDHPGTWDEQAAVDAVVELLEEGATRVPDYDISTSSVRGHSTVALEPGGVIVAE GIFAERMPAALDRAGVHYAAWYIDQARTTTAARRFVRDVAERRKPVPFLVQRGWSLYRTD AARRAAAVAARFTPRRKREIIADLTA >gi|289557686|gb|ADCD01000046.1| GENE 114 124870 - 125565 558 231 aa, chain - ## HITS:1 COG:VNG2536C KEGG:ns NR:ns ## COG: VNG2536C COG0095 # Protein_GI_number: 15791289 # Func_class: H Coenzyme transport and metabolism # Function: Lipoate-protein ligase A # Organism: Halobacterium sp. NRC-1 # 21 185 33 194 227 68 40.0 8e-12 MDELAVFRAAAAEGRALDDLIRVYVPEPTVAFGQRDARLPGFAAAAAAARAHGFEPVVRR AGGRAAAYHHGCLVVDHLSQQEDAALTQQARFAEFADLFVRAFARMDVPASVGEIPGEYC PGEFSVQGPAPTYPVKLAGSAQRVVKGAFLFSTHVVVSDPAPLRAVLVDVYRELGLDMDP RTAGAAEDVRPGVSVPAFAAALREEYTAWAAAAGLEVVDEQLAVLAAGTSG >gi|289557686|gb|ADCD01000046.1| GENE 115 125637 - 126503 671 288 aa, chain - ## HITS:1 COG:no KEGG:Mlut_10540 NR:ns ## KEGG: Mlut_10540 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 288 1 288 288 520 97.0 1e-146 MTDITSTSATSVADDPLAFYVRLGEPAVDADGVRTSRVRSTVHAQGAWREEEMHMAAVSG LLLHEVAAHETTPGLRVGRLSYDILGTLWSGELEVVTRTLRPGRTIELVESVLHARGRTV LTLRAWLLSTSDTAAVAQLPDEPLPPRSQAQAHNALHGWGGGYIASLDGVILPGHGPGHG RVWLTTDREMVAGESTSDLVRLISLTDAANGIAPALPAKPGGWFFPNVDLQIHLYREPTG PWLGLAGQVTVGPDGVGLTSTVLHDDDGPFAHVEQTLTLRSWPVEGGL >gi|289557686|gb|ADCD01000046.1| GENE 116 126592 - 127191 612 199 aa, chain - ## HITS:1 COG:Cgl0617 KEGG:ns NR:ns ## COG: Cgl0617 COG2011 # Protein_GI_number: 19551867 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, permease component # Organism: Corynebacterium glutamicum # 21 199 47 225 225 174 62.0 9e-44 MVGWAFVLGGILGLLIGLVLYTTRPGGIFANRAVYVVTNFVVNLIRPIPFVILIAALQPL TIAVLGIGIGNTAVVFCMIWASTFGIARIVEQNLVSLDPGVIEAARAMGASRMRIVRTVV LPEALGPLILGFTFVIISLVDMSAMAGIIGGGGVGNFAIVEGYNRFRPEVTWLAVIVVIV FVQALQLIGNGVARKVMRR >gi|289557686|gb|ADCD01000046.1| GENE 117 127266 - 128360 776 364 aa, chain - ## HITS:1 COG:Cgl0618 KEGG:ns NR:ns ## COG: Cgl0618 COG1135 # Protein_GI_number: 19551868 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, ATPase component # Organism: Corynebacterium glutamicum # 4 353 2 349 360 334 53.0 1e-91 MAGSHTSDRDAVTPGRPAEGAPGEPVIVFDHVSRVFGAKKGAGVKAVDDVSLTVNRGEVF GVIGFSGAGKSTLIRMINGLEKPTSGTVTVLGQQVSHLSEAKLRPLRTRIGMVFQQFNLL TSRTVAGNIEFALDTAGWPRSTRRARVAELLEFVGLADKAKHYPEQLSGGQKQRVGIARA LAAEPEILLADEATSALDPSTTHEVLSVLRRVNEELGVTIVAITHEMEVIRSIADRVAVM DTGRVVETGKVYDLFSRPAHSADAASFVATALKDRPNADEVARIRARTEGRLIMVSLKDS AAVSAVLGTASTRGVGFEIVHGGMSATKDSAYGLLTVALTGEAAAVDAFVAELAGAGDVQ EVHQ >gi|289557686|gb|ADCD01000046.1| GENE 118 128364 - 129269 1043 301 aa, chain - ## HITS:1 COG:Cgl0619 KEGG:ns NR:ns ## COG: Cgl0619 COG1464 # Protein_GI_number: 19551869 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface antigen # Organism: Corynebacterium glutamicum # 7 293 6 293 299 184 39.0 2e-46 MTTPSNISRRSFAGLSLAAVGALALTACNSQAEKKGDDGAQTVRIGVVSENETHRALVKL AKEKHGIDVEIRNFTEYTQPNPALDNGDIDMNWFQHIAYLADYNQASGKDLTLIGTTEII PLPLYSKKYKDVSEFKKGDTVAIPNDTVNQARAINVLVAAGLLKLSNETIRPEPKDIDEA ASTVKVQTVAAQQTVNALESVQGSVINNTFSADAGIDTNTALFKDDPKADSAKPFVNGFA VRREDRDNETYKKIAALYHEQAVLDESAKLSSGTSVPVQLDAAQIDETLKQYQDAIAKQG A >gi|289557686|gb|ADCD01000046.1| GENE 119 128982 - 130064 362 360 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLEPVHVDVAVVQRRVRLRVLGEVADLDVDAVLLLGELHQGAVRLVLGHDADAHGLGAVV ALLLGLRVAGGQGERADGGQGQAGEGAAGDVRGGRHGVLLGGRCDVADAGGHGGCGTVRG RPCGGWFPAGHSTAGGGAGDAPSRRPGSFRTLLLPVPQSPRAPLEGSARSGGGPLLGPLP PVNMGLASGSSWDHVDPPRRDPQPLLLKLGPSLSQRVRSSRRDGDAQRHTAGTGHRSVVH LARRRRPVASVGRRPAVVGTGLRRAGSEVPVLVLGVLGLADHVGGAGAGEEVVVLVRVRG ERGEDGGVHVRGLGREHGLVAQVHQRLVRVVVQELLHVLGQADGVVEVMGVLDFVLVQLE >gi|289557686|gb|ADCD01000046.1| GENE 120 129780 - 130763 992 327 aa, chain - ## HITS:1 COG:MT3133 KEGG:ns NR:ns ## COG: MT3133 COG0208 # Protein_GI_number: 15842613 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, beta subunit # Organism: Mycobacterium tuberculosis CDC1551 # 14 327 11 324 324 495 77.0 1e-140 MCPAVTETQQSHLVEAVNWNRIQDEKDVEVWNRLVNNFWLPEKVPLSNDVQSWSHLTDEE RLLSMRVFTGLTLLDTIQGTVGAVSLIPDAMTPHEEAVLTNIAFMESVHAKSYSSIFSTL ASTPEIDEAFRWSRENRNLQAKAGLIVERYDGQDPYKKKIASTLLESFLFYSGFYWPMYL SAHARLTNTADLIRLIIRDEAVHGYYIGYKYQRSIETLPEEKREELKAFTFELLFELYEN EVEYTHDLYDAVGLAEDVKKFLHYNANKALMNLGYEPMFPAETTNVNPAILSALSPNSDE NHDFFSGSGSSYVIGKAENTEDEDWDF >gi|289557686|gb|ADCD01000046.1| GENE 121 131010 - 133187 2193 725 aa, chain - ## HITS:1 COG:MT3137 KEGG:ns NR:ns ## COG: MT3137 COG0209 # Protein_GI_number: 15842617 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, alpha subunit # Organism: Mycobacterium tuberculosis CDC1551 # 27 725 27 725 725 1178 81.0 0 MTITAPTEADLIRQAKNMPAEWQNLGYHELNAMLNLYGADGRIQFEADHAAARQYFLQHV NTNTVFFHDLEEKLDYLQKNDYYETETFEQYPFEFIRGLFDRAYKAKFRFPTFLGAFKFY TSYALKTFDGKRYLERYEDRVAVVALHLARGDQELATHLVDEMIAGRFQPATPTFLNSGK KQRGELVSCFLLRIEDNMESIARGINSALQLSKRGGGVALSLTNIREHGAPIKQIENQSS GVIPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDIHRFLDTKRENADEKIRIKTLSLG VVIPDITFQLAKKNEDMYLFSPYDVERVYGVPFSEISVTEKYYEMVDDARIKKTKINARE FFQTIAEIQFESGYPYVVFEDTVNAANPIKGRITMSNLCSEILQVSEASEYNEDLSYAHV GQDISCNLGSMNIAKTMDSPDFGRSVETAIRALTAVSVMSDIQSVPSIAKGNAASHAIGL GQMNLHGYLARERVHYGSEEGIDFTNMYFYAVLFHALRASNRIAIETGQRFGGFEDSKYA SGEFFDKYTDQEWAPATERVAGLFAEAGIALPTQDDWRELKASVMEHGIFNRNLQAVPPT GSISYINNSTSSIHPVASKIEIRKEGKLGRVYYPAPYLTNENLEYYEDAYEIGYEKIIDT YAAATQHVDQGLSLTLFFKDTATTRDLNRAQIYAWTKGIKTIYYIRLRQLALEGTEVEGC VSCML >gi|289557686|gb|ADCD01000046.1| GENE 122 133184 - 133651 359 155 aa, chain - ## HITS:1 COG:YPO2650 KEGG:ns NR:ns ## COG: YPO2650 COG1780 # Protein_GI_number: 16122859 # Func_class: F Nucleotide transport and metabolism # Function: Protein involved in ribonucleotide reduction # Organism: Yersinia pestis # 25 154 4 130 134 154 57.0 5e-38 MTVAADPSHIRSAEAQGLVPTDAGLIYFSSASNYTHRFVEKLELPEDRVARLPLITREPT LGATAPYVLMTPTYGGGSGPGAVPKQVIKFLNVPENRHWIRGVIASGNTNFHEGYCLAGY IISRKCQVPLMYKFELMGTPDDVERVRGGLEGLWT >gi|289557686|gb|ADCD01000046.1| GENE 123 133663 - 134322 264 219 aa, chain - ## HITS:1 COG:YPO2651 KEGG:ns NR:ns ## COG: YPO2651 COG0695 # Protein_GI_number: 16122860 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutaredoxin and related proteins # Organism: Yersinia pestis # 139 215 1 77 78 103 50.0 2e-22 MPGQPPVVTGYSDAGRWRASTCSGPRGSDTPPADVANSTFRLWEPGPEISTGCGQSTSVP ACPACPRGSSRTAGCGQDGQRVGIRNYSGVTTTCRDGSRPRSLDVVSTQMFGTPRDSLSW EPRRHPQTTRDHEGTGIAMTVTVYTKPACVQCNATYRALDKKGIAYEVVDMSQDPAALER VRALGFMQAPVVVTETDSWSGFRPDKIAELAESVAASVA >gi|289557686|gb|ADCD01000046.1| GENE 124 134321 - 134626 244 101 aa, chain + ## HITS:1 COG:DR1844 KEGG:ns NR:ns ## COG: DR1844 COG2388 # Protein_GI_number: 15806844 # Func_class: R General function prediction only # Function: Predicted acetyltransferase # Organism: Deinococcus radiodurans # 5 99 2 91 93 57 30.0 9e-09 MSTSPTVTRNDAESRYELHDGGTLLAVLDFRDNGAAVSLNRAFTIPVHRGQGHAATLTAG AVEDIETNGGPAGGRRIVPMCWYVAQWFDEHPEKSALLAPR >gi|289557686|gb|ADCD01000046.1| GENE 125 134636 - 135685 726 349 aa, chain - ## HITS:1 COG:no KEGG:Mlut_10400 NR:ns ## KEGG: Mlut_10400 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 349 1 358 358 480 92.0 1e-134 MRTARPTRLAAALGAGVLLTGVGATPALAAPAHPAGWTAEHGLPGGSFLVASAEGEAGAS FGTEFEVDESDVRLTVAPVLEGDARGAETEVPFTYDDELERGDFDVAAARRSLGESGTGP VVYTLSVLGGEVAALTYGPDADLTDADPGEPLRADQRHELGFHMLPTVWDTTLLAAPGER DVFISSYTGDEAAPLTLVAGPAEGRVVEVTEEETGGPRGYVYQAPEGFTGSDTVTLRATR DGVTTTRTVTVRFGDPRVDLYDWENGRIPGFVNFPVAGLFDDASAPGQPTDPDTPTTPAE PETPAAPAEGEHTVPDAVETGRGPAAWPVAVAVLAAGVLAVVRRHRVAA >gi|289557686|gb|ADCD01000046.1| GENE 126 135883 - 136953 463 356 aa, chain - ## HITS:1 COG:no KEGG:Mlut_10390 NR:ns ## KEGG: Mlut_10390 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 341 1 341 356 471 95.0 1e-131 MSRADIAPARVRPRRWSVAVGGALLSVTLATGGCSVAEEPGQTGGTEAGNTYLEGVLASP SQTSADPLAADIQFAGLLLRNHRDAIQQSDEVLGKDGVDREIRATAERMKSEHEERAGRL ESMLEGWGVPSDDVRGAGAESTPSAQPESTEDAEPTQIVGDELRAGLLSDREKNVLAAAE PEEAGRIYLLQMHRLYQGALTISATEAEDGSDDAAKELASSVVEGHRKELESLAETLAEM GVIGSSGARTADPSGFTGPIKIEGTGANGGSVPSDFVPEPVQRVHSFRATQKPVLPSSSS PSSSSASGSSSASGRDAEDQRGRDAASASPSPSPADTAQATPRPSSGASPSPSASR >gi|289557686|gb|ADCD01000046.1| GENE 127 137076 - 137972 513 298 aa, chain - ## HITS:1 COG:no KEGG:Mlut_10380 NR:ns ## KEGG: Mlut_10380 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 298 1 282 282 380 88.0 1e-104 MNTTVRRALWVVLVLLCLGLVFLAVRGVLAVGAVPISAAPTLGATASAIPSSSSSARFTP SPAPTATPTPTPSPSSAAPTREAAVPVETQEPAGTPTPSEEPTPTEEPTPTEEPTPTEEP APAAAAHLSGPAAPWDEITATPVHVDVHQDGEQIVGAGIDLTQLDEGGDLDPEPQTVGWY GPPQWGTTPGERSPYAGVLAGHVVYYGVRDVFWNLGDVRAGAVVVVTYDDGTQAAFEADA DAVSVEKEALTQDPVHRWAWEPGGDDAKVTLITCDLVPGTGMAGNAFNNWVVQATRVA >gi|289557686|gb|ADCD01000046.1| GENE 128 138121 - 139224 965 367 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_6262 NR:ns ## KEGG: GYMC10_6262 # Name: not_defined # Def: conserved repeat domain protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 182 325 1930 2084 2160 76 34.0 1e-12 MSLQFPARLSAAALGAAVLVGVAAAPAHAATWTPEHGTPSGTFVSSDDNLMEFVLYDNFA TEDIRAVVVTASGEETEIQVDFITEDDMGAVFMHDIEQALGGDLAQPYEVHVYGAGQLAF GAAFAADGTMTPVEAEEFIPFEDWAEVATWRVYTDQNATVVESLVTEDGGVPSPIDAELT VAPKHGTVEIGGTSFGYTPEKDFLGTDTFTVVMTANGVTRTVEFTVEVLDLPGDSTPTPI DPAPAPDPQPEPEPAPEPEPAPEEPVDPAPAPEEPAPEEPVDPAPAPEEPTPAPEEPTPA PEEPAEPAEPVVDEDEPAAPAPEQPDEDGHTVPDTVETGNGSAWGLAAIGALAAGVLVRL RRTFGLA >gi|289557686|gb|ADCD01000046.1| GENE 129 139355 - 140410 611 351 aa, chain - ## HITS:1 COG:lin1846 KEGG:ns NR:ns ## COG: lin1846 COG0583 # Protein_GI_number: 16800913 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 50 287 1 243 295 85 27.0 2e-16 MEMPPGDGSRGAGTTGGHDDDASGRVLPWWGVESMPSSDDLAWRLCSSGMEEKLLRAFVT VAEVGTVSGAAIRLDLVQSALSRQLQRLQRELRLPLFARVAGRLELTTAGEAFLPVAREV LVAHRRAEQAARALASGRLTDVAVAAPGTTLIDVVLPFVATFGEEDPRPRVAETQLDDSL LDAVARHDLVVMPTVPPPSVASLPLMDLPVWAYVAPGHPWAGRTRVSLDDLVAQPVVAPA RTFMARRVLDGAVAVAGLTPPALVEANSGRVAQALVATGAGVAVVTEDPAFGLMPVRVIA QGRTLTVRLHAAWREDHFAAETLEAIARRLQAFVWDRYAEPGDVASHRKSA >gi|289557686|gb|ADCD01000046.1| GENE 130 140409 - 141731 1305 440 aa, chain + ## HITS:1 COG:ML0485 KEGG:ns NR:ns ## COG: ML0485 COG0160 # Protein_GI_number: 15827162 # Func_class: E Amino acid transport and metabolism # Function: 4-aminobutyrate aminotransferase and related aminotransferases # Organism: Mycobacterium leprae # 7 437 4 443 446 546 64.0 1e-155 MTATPDLEQTRHLATELPGPRSRELAERQQRAVPAGVATTMPVYAARAAGGILEDVDGNR LIDLASGIAVTSVGASHPRVVAAVQEQVAQFTHTSFMITPYEGYVAVAEQLDRTSPIPGE TRTALFNSGAEAVENAVKVARAFTGKQAVAAFDHAYHGRTTLTMALTAKSMPYKHGFGPF APEIYRVPGSYPLRDGLSGAEAAQRAISALEKQIGADNLAAVIMEPIQGEGGFIVPAEGF LPAVVEWCKANDVLFIADEVQSGIARTGAWFASETEGIEPDLMATAKGIAGGMPLSGVTG RAEVMDSVHPGGLGGTYGGNPVATAAALAVFEAVEEDGLLEKARRIEQVIREHFEQNTDD RIAEVRGRGAMMAIEFVDPATGEPDATLTATVAAAVRATGVILLTCGTYGNVVRFLPPLT IGEDLLKEGLSEVTKALQSA >gi|289557686|gb|ADCD01000046.1| GENE 131 141813 - 142109 324 98 aa, chain - ## HITS:1 COG:no KEGG:Mlut_10350 NR:ns ## KEGG: Mlut_10350 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 98 6 103 103 158 96.0 5e-38 MTFDVARAGRALAQVGVRTLATAAGLEKEQLRRFEKGLADLRVDERLRLEKALLKYGVGL VPEDEFGGTGVRRIFSAEKSRRIKAMENEGGPAYEDDI >gi|289557686|gb|ADCD01000046.1| GENE 132 142320 - 143705 1291 461 aa, chain - ## HITS:1 COG:DRA0343 KEGG:ns NR:ns ## COG: DRA0343 COG1012 # Protein_GI_number: 15808002 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Deinococcus radiodurans # 11 456 19 462 477 421 51.0 1e-117 MSTPTGYRVQDPSTDQVVETFPALADGEVDQVLAAAETAQRAWAARPIEERATIVQKVAD LFEERKDELAQIIATEMGKRVTEGVEEAEFSSAIFGYFADKGPTLAADRPIETFEGGRAM IRHLPLGVLLGVMPWNFPYYQIARFAAPNLMLGNAIVLKHAEICPRSALAVQQIMDDAGV PAGVYTNVFATHDQIAEFIADPRVAGVSLTGSERAGSVIGALAGQHLKKAVLELGGSDPY IVLDAEDPAEAARTAWATRMYNMGQACNSNKRMIVSADIHDAFVAELVSLAEAMKPGEAA DEDPTVFTPLSSRGAAEGLAEQVERARQQGATVHVGGTVTDEAGARFAPAVITGVTSEMD AYREELFGPVAVVYKVESADEALALANDSQYGLGGAVFSQDEAQAERVARQLEVGMANVN TPAGEGAEIPFGGVKRSGFGRELGPLGMDEFVNKQMYFVQD >gi|289557686|gb|ADCD01000046.1| GENE 133 143702 - 144502 599 266 aa, chain - ## HITS:1 COG:RSp1046 KEGG:ns NR:ns ## COG: RSp1046 COG0531 # Protein_GI_number: 17549267 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Ralstonia solanacearum # 37 220 274 446 458 65 27.0 9e-11 MFVIIAVYILSALAVISWAGIGSEGLGAGNPDNQESIFAVLAGPILGPFAVIMSSAILVS SLASLQSTMVSPARTLLAMGFYRAVPARFAELSPRFNSPAFATWVCAGFAGLFYVVTRLL SENALWDTITALGLMICFYYGITALACVWYFRREWFASVGNALTTFLFPLIGGLVLLVMF CVTALDSTDPDYGSGSSVFGVGTVFILGMGVLAIGVVLMMWTRLRHPAYFRGETLPQTDS TRPIPIIRPDDDGTAVVRDPNERTHS >gi|289557686|gb|ADCD01000046.1| GENE 134 144457 - 145362 597 301 aa, chain - ## HITS:1 COG:RSp1046 KEGG:ns NR:ns ## COG: RSp1046 COG0531 # Protein_GI_number: 17549267 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Ralstonia solanacearum # 42 281 9 236 458 83 28.0 6e-16 MSASTPRRRVVDDEGHEHVYPTTSAIEQVNLLNPGAVSNKGLQAGKVGLLGAVVIGVSVV APAYTLTSGLGPTISTVGTHVPAILLLGFIPMLLVALGYRALNTRVPDSGTSFTWATHAF GPYVGWMGGWGLIAASVIVLSNLAAVAVDFTFLLLAQITGSQAIADMAGNLWVNIPLTLV YLALAGWISHRGMETTKHLQYILVAFQILALGAFAVAALTQSSRGAGFDPTPVQLDWFNP FTAGDFSVVAAGVSLSIFLFWGWDVTLTMNEETKDPERTPAGPPPSPCSSSSPSTSCPPW P >gi|289557686|gb|ADCD01000046.1| GENE 135 145389 - 146216 696 275 aa, chain - ## HITS:1 COG:slr0782 KEGG:ns NR:ns ## COG: slr0782 COG1231 # Protein_GI_number: 16331344 # Func_class: E Amino acid transport and metabolism # Function: Monoamine oxidase # Organism: Synechocystis # 41 262 259 467 471 115 33.0 9e-26 GRRAGRRRRPRPAGAHLRWAEPDPSTADEKNGVAADVRNGVAHDGAAGDVVALTDDYEVH ARYAVLAIPPNLYSRISFEPPMPREQQIAHQHISMGLVIKVHAVYETPFWREEGLSGTCF GGGRLVQEIYDNTNRGENLAGGAPGEEDPHGTLVGFVSDVYAEQMWALPEEERKAAILGA MAEYLGPRTLEPIAFFLSDMAAEEWTRGAYATSYDLGGLSRWGHLQNRPTGPIHYACSDI AAEGYQHVDGAIRMGEAAALAIAEREATDAGQPTG Prediction of potential genes in microbial genomes Time: Thu May 26 07:23:34 2011 Seq name: gi|289557672|gb|ADCD01000047.1| Micrococcus luteus SK58 ctg1119142780339, whole genome shotgun sequence Length of sequence - 10799 bp Number of predicted genes - 12, with homology - 12 Number of transcription units - 10, operones - 2 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 136 - 369 204 ## Mlut_19400 arabinose efflux permease family protein 2 2 Tu 1 . - CDS 574 - 777 203 ## COG1278 Cold shock proteins 3 3 Tu 1 . - CDS 1016 - 1540 429 ## COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family 4 4 Tu 1 . - CDS 1916 - 2173 88 ## gi|289705595|ref|ZP_06501986.1| hypothetical protein HMPREF0569_2021 - Prom 2208 - 2267 2.0 5 5 Tu 1 . + CDS 2172 - 2537 236 ## Mlut_19350 hypothetical protein 6 6 Op 1 . - CDS 2614 - 2982 140 ## COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) 7 6 Op 2 . - CDS 2993 - 4309 930 ## COG0141 Histidinol dehydrogenase 8 7 Tu 1 . + CDS 4444 - 6021 1305 ## COG0668 Small-conductance mechanosensitive channel 9 8 Tu 1 . - CDS 6038 - 6574 492 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins 10 9 Tu 1 . + CDS 6672 - 8627 1274 ## COG0435 Predicted glutathione S-transferase + Term 8745 - 8778 0.5 11 10 Op 1 8/0.000 + CDS 8891 - 9595 632 ## COG1540 Uncharacterized proteins, homologs of lactam utilization protein B 12 10 Op 2 . + CDS 9592 - 10798 679 ## COG2049 Allophanate hydrolase subunit 1 Predicted protein(s) >gi|289557672|gb|ADCD01000047.1| GENE 1 136 - 369 204 77 aa, chain + ## HITS:1 COG:no KEGG:Mlut_19400 NR:ns ## KEGG: Mlut_19400 # Name: not_defined # Def: arabinose efflux permease family protein # Organism: M.luteus # Pathway: not_defined # 1 42 24 65 407 63 95.0 2e-09 MGAGPLFNYGVSASATVVMERLDVTSGQLGTVMTVVFAAAVVAGDYRAGFAVVAGGYLLA LGVVLLLGRHVGRRGAA >gi|289557672|gb|ADCD01000047.1| GENE 2 574 - 777 203 67 aa, chain - ## HITS:1 COG:MT3750.1 KEGG:ns NR:ns ## COG: MT3750.1 COG1278 # Protein_GI_number: 15843260 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Mycobacterium tuberculosis CDC1551 # 1 67 1 67 67 90 67.0 9e-19 MAVGTVKWFNAEKGYGFIAPEDNSADVFVHFSAIQGSGFKELQENDRVEFETQDGPKGLQ AANVTKL >gi|289557672|gb|ADCD01000047.1| GENE 3 1016 - 1540 429 174 aa, chain - ## HITS:1 COG:MT1989 KEGG:ns NR:ns ## COG: MT1989 COG1853 # Protein_GI_number: 15841410 # Func_class: R General function prediction only # Function: Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family # Organism: Mycobacterium tuberculosis CDC1551 # 21 173 20 170 171 111 39.0 7e-25 MTLTHEPHTAAWDTDLSLGNLRSGLSAFPTGVVALAGLADDTPEVMVSSSFGVGISWEPA LVSFSAQNSSRTWPRLRRAGAIGVSLLAADQTPLCRQLASREGDRFAGLDVHHSPHDALL IGGSSLWLETRVHAEVPAGDHTVVLLEVTAFADHTDAAPPAALHRNLFHGLRAL >gi|289557672|gb|ADCD01000047.1| GENE 4 1916 - 2173 88 85 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|289705595|ref|ZP_06501986.1| ## NR: gi|289705595|ref|ZP_06501986.1| hypothetical protein HMPREF0569_2021 [Micrococcus luteus SK58] # 20 85 1 66 66 80 98.0 3e-14 MPPSWKSSSGSGTGPSSAHVVSDGTGAVARAGEDGATEGLDAPVALEETLLWEAEHPEMA VLRRAAATTAADNAARLVVMSIRMI >gi|289557672|gb|ADCD01000047.1| GENE 5 2172 - 2537 236 121 aa, chain + ## HITS:1 COG:no KEGG:Mlut_19350 NR:ns ## KEGG: Mlut_19350 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 116 7 120 124 101 48.0 7e-21 MTLSEYSTSDQPGTQYIDTASETVVKEGVGTGEYQVTLDDARRGERYRVQLVCPSDATGK SDVYVSDSPTSKGQWQAGSEAMCGDWSAGLPPRQKDGPFTVTVQVENDRPFRVAVTKLLG G >gi|289557672|gb|ADCD01000047.1| GENE 6 2614 - 2982 140 122 aa, chain - ## HITS:1 COG:Cgl2072 KEGG:ns NR:ns ## COG: Cgl2072 COG1188 # Protein_GI_number: 19553322 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) # Organism: Corynebacterium glutamicum # 4 118 9 124 126 115 61.0 2e-26 MSGVRIDAWLWAVRLYKTRSAATAAVRAGHVRIDGEPVKAATPVVVGNRVRVRQDGRERI LEVTGLIAKRVGAPVARQQYVDHSPPPVPRELLAVPYRERGAGRPTKRDRRQLDALRGRD RR >gi|289557672|gb|ADCD01000047.1| GENE 7 2993 - 4309 930 438 aa, chain - ## HITS:1 COG:Cgl2049 KEGG:ns NR:ns ## COG: Cgl2049 COG0141 # Protein_GI_number: 19553299 # Func_class: E Amino acid transport and metabolism # Function: Histidinol dehydrogenase # Organism: Corynebacterium glutamicum # 1 437 1 433 442 450 57.0 1e-126 MLSVTDLRPLDTATADLSRIIPRANVDVSSVVPVVAPILEQVRHGDEQTLLELAERFDGV RPPALRVPAEALEAALTGLDPQVRAALEESIRRARLVHAAQHPQDSTVELGEGAVVENHW LPVGRVGLYVPGGRAVYPSSVVMNVVPAQAAGVGSLAVTSPPQRDHGGLPHPTVLAACAL LGVDEVYAAGGAQAVAMLAHGVKDDDGGWLCAPVDLVTGPGNVYVAAAKRALQGVIGVDA EAGPSEIAVIADGTARADWVAADLISQAEHDPLAASVLITDSEDLLRDVQAAIEAQVPGQ LHEEQLREALTGPQSGVLLVRDMDQAVEVSDRYATEHLEIQTRDPEALVGRLRNAGAVFV GPHAPVPLGDYSAGSNHVLPTSGTARFSSGLNTVTFLRLQQRIRYTETGLKEVADGIGVL AEDERLPAHGAAIRARFA >gi|289557672|gb|ADCD01000047.1| GENE 8 4444 - 6021 1305 525 aa, chain + ## HITS:1 COG:MA1724 KEGG:ns NR:ns ## COG: MA1724 COG0668 # Protein_GI_number: 20090576 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Small-conductance mechanosensitive channel # Organism: Methanosarcina acetivorans str.C2A # 171 285 85 199 379 88 34.0 3e-17 MVLPALSALAPPPLLTALDRLLAGETVPSGVEGDFQDGAAATTRAFGVEWGTLLTVLMAF AVGAAVVYLALQVARVVLVRRPAFQHGAARLSLPAAVAAGLLASRIWLGVMAEEQTWYRP ASFLMLIAVAAAGAWAAWRLVRVIEAGILGRYQETGVEHRRERRIRTQTILIRRILNAVI VVVAVAVVLLGVPEVRSLGAGLLASAGVISVIAGLAVQSTLTNVFAGFQLAFTDAIRVGD VVDMEGVFGTVEEITLSNVVLKLWDGRRMVYPSSHFTTQPFENWTRVGSEVSGVVELDVD WRVPMDALRARLTQLLESTDLWDGREHALQVTDATGGVVRIRAVVSARNSGDLWDLRCLV REDLVTFLRHEHPEGIVVQRMVDGHPAHDDAAPASEGSDAGARDGDPTGEPGPDGSGVAA REPRPRTAPLPRVDGADPRPDTLTTPLTRVGDHSGLYTGSMTAVQRNRELAGPGEEAFAE RRAQQAKQAAEAAAADEAGRRSGAGSHVDGLLDDAVTRRRQDDED >gi|289557672|gb|ADCD01000047.1| GENE 9 6038 - 6574 492 178 aa, chain - ## HITS:1 COG:AF0987 KEGG:ns NR:ns ## COG: AF0987 COG0589 # Protein_GI_number: 11498592 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Archaeoglobus fulgidus # 1 128 1 130 130 59 31.0 4e-09 MTILVGYAPSKAADAALDTALDIARSTGERVVVVNAGPGGEHRTKSLVTEEQQRGVQARL DASGVTAEFRQYARGRSTVEEMKDVAAELDPSIVVIGVRRRGGFGRFVMGSVSDELLQEI DQPVLCVKEYRQYGDHTPEAVSHVAETDPAAHGLPASEPMAERRRLTPVDPGDPTLER >gi|289557672|gb|ADCD01000047.1| GENE 10 6672 - 8627 1274 651 aa, chain + ## HITS:1 COG:Cgl1235 KEGG:ns NR:ns ## COG: Cgl1235 COG0435 # Protein_GI_number: 19552485 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted glutathione S-transferase # Organism: Corynebacterium glutamicum # 298 646 19 355 359 459 64.0 1e-128 MRGHRLDGHAGHGAREAGIDAGGQVLGRDRRRLGLGQRGQGGTDLLQAALAVVPVVAGDD VQRLRHGPVRGQHRERTRRLEAAQAGQVVGEGAVRVVEHGGARAEDGVARDDRAVRARVR DGERVGVRGVARGVPRQHRGAGDVDPLVRRQDGGPAAAPVRVCGAHGRARGRVERIHPAG VVGVPVRHQDERDPAALGRRADALEVGGDVVLRARVHHDGRIRVRCGDHVRVGAREGHRG GVLGGHAAHQRGGRGAGRGGGRRHRLECMENQQTGQAADRGTIDTREGLTGNYVQSGAEF TRDTNYIADRIVADPEAVRALPVAEPSTVGRVGGGLTQGAEAWPVEAGRYRLVAARACPW ANRTIIVRRLLGLEDAISLGTPGPTHDERSWTFDLDEGGKDPVLGTERLQENYFTRFPDY PRGITVPAIVDVPTGGVVTNDYPQITLDLSTEWTAFHRDGAPQLIPDAGPERDEMFEVIE RVFTEVNNGVYRCGFAGSQEAYDAAYERLWTAMDWLEERLTTRRFLMGERITEADVRLFT TLVRFDPVYHGHFKCNRNKLTEMPALWGYARDLFQTPGFGDTIDFAQIKEHYYVVHEDIN PTSIVPAGPELGSWLSEHGREEFGGDPWGGGTEPGPVREGERVDPEHTPLR >gi|289557672|gb|ADCD01000047.1| GENE 11 8891 - 9595 632 234 aa, chain + ## HITS:1 COG:ML0333 KEGG:ns NR:ns ## COG: ML0333 COG1540 # Protein_GI_number: 15827090 # Func_class: R General function prediction only # Function: Uncharacterized proteins, homologs of lactam utilization protein B # Organism: Mycobacterium leprae # 1 233 19 251 252 241 59.0 9e-64 MGDDAAIMPSVSSANVACGFHAGDPSGIAQTCRDAVAAGVTIGAHVGYRDLAGFGRRFLD CTPTELADDVLYQIGALDALARAAGGRVRYVKPHGALYNTIVRHEAHAQAVVDGVKAFGS DLPLLLLPGSVALDKAAAAGLRGVAEAFADRGYNPDGTLVSRREPGAVLHDEDAVAARMV RLATEGVVAAVDGTDVRVDAESICLHGDTPGAVAMAAAVRRALEGAGVAIKAFA >gi|289557672|gb|ADCD01000047.1| GENE 12 9592 - 10798 679 402 aa, chain + ## HITS:1 COG:AGl1866_1 KEGG:ns NR:ns ## COG: AGl1866_1 COG2049 # Protein_GI_number: 15891050 # Func_class: E Amino acid transport and metabolism # Function: Allophanate hydrolase subunit 1 # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 25 211 37 224 253 157 46.0 5e-38 MSAPHHPAAVTPARPIRWVGTQGFLIECASLEDVMAVHAHLTAHPERGQRQVMAAAATVL VTFTSQAAAEHAAPRVSTLTPDAGEVTGGRIVEIPVVYDGEDLAEVGRLTGLGVDGVIRA HSEADWFAAFGGFAPGFMYCASEAAPFEAPRRSSPRTAVPAGAVAVAGAFSAVYPRTSPG GWQLLGHTTAALWDLGREQPALLQPGDRVRYVPVRPTASVTSGADAAVDATPPADAAAGL PSVAGRRGVTVVDPGLLTLVQDLGRPGLGDLGVVASGAADRDAARQANRLVGNRSREAVL ETVLGGLTLTAHGHQVMALAGAEAGGTITAADGATRRVPARTPFVVLDGQTLTVDEPVGG LRVYVGLRGGIDVPPVLGSRSTDTLSGLGPAPLTAGDRLARR Prediction of potential genes in microbial genomes Time: Thu May 26 07:23:50 2011 Seq name: gi|289557655|gb|ADCD01000048.1| Micrococcus luteus SK58 ctg1119142780356, whole genome shotgun sequence Length of sequence - 15857 bp Number of predicted genes - 15, with homology - 15 Number of transcription units - 7, operones - 4 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 4/0.000 - CDS 2 - 2348 1862 ## COG1391 Glutamine synthetase adenylyltransferase 2 1 Op 2 . - CDS 2359 - 3699 1362 ## COG0174 Glutamine synthetase 3 2 Tu 1 . + CDS 2764 - 4602 918 ## COG0413 Ketopantoate hydroxymethyltransferase 4 3 Tu 1 . - CDS 4671 - 4883 199 ## Mlut_13450 hypothetical protein 5 4 Op 1 . + CDS 4920 - 5864 912 ## COG0024 Methionine aminopeptidase 6 4 Op 2 . + CDS 5963 - 6709 658 ## COG1940 Transcriptional regulator/sugar kinase 7 5 Op 1 . - CDS 6868 - 7362 468 ## COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains 8 5 Op 2 2/0.000 - CDS 7406 - 11002 3521 ## COG0587 DNA polymerase III, alpha subunit 9 5 Op 3 15/0.000 - CDS 11178 - 12071 236 ## PROTEIN SUPPORTED gi|238855152|ref|ZP_04645474.1| pseudouridine synthase, RluA family 10 5 Op 4 . - CDS 12076 - 12471 300 ## COG0597 Lipoprotein signal peptidase 11 6 Tu 1 . - CDS 12603 - 13202 479 ## COG3599 Cell division initiation protein 12 7 Op 1 . - CDS 13342 - 13638 321 ## Mlut_13530 possible membrane protein 13 7 Op 2 14/0.000 - CDS 13646 - 14278 411 ## COG1799 Uncharacterized protein conserved in bacteria 14 7 Op 3 7/0.000 - CDS 14389 - 15177 713 ## COG0325 Predicted enzyme with a TIM-barrel fold 15 7 Op 4 . - CDS 15174 - 15788 376 ## COG1496 Uncharacterized conserved protein Predicted protein(s) >gi|289557655|gb|ADCD01000048.1| GENE 1 2 - 2348 1862 782 aa, chain - ## HITS:1 COG:Cgl2179 KEGG:ns NR:ns ## COG: Cgl2179 COG1391 # Protein_GI_number: 19553429 # Func_class: O Posttranslational modification, protein turnover, chaperones; T Signal transduction mechanisms # Function: Glutamine synthetase adenylyltransferase # Organism: Corynebacterium glutamicum # 50 781 53 781 1045 400 38.0 1e-111 MSSLPDAATADAPDRRALAQAGVADARRVQSLLASPEFEGADVAPLVERLGHAADPDRAL LFWVRLAEREPRVHRALRDAETTARLLRLLGASEALGEFLIRRPEHLDLVLEPESAAATA PALAQPDPADGEEWADEPAALRRLLLEAVEADPDADRPRAGLTGTDAAVALRRAYRRQLA AIALRDLDSADPAAVMPSVGRWLADLAGAAVDAALAVSRATLAEREGPVVDRLDLAVIGM GKCGAGELNYVSDVDVVFAHAVREAPDGADPETEVPDGPRAAALAAELAAGIGRVIQGAA PEPGLWDVDANLRPEGKDGALSRTVESHAEYYRRWAHGWEFQALLKARPIAGSPQLGERY IAEIWPRVWESSSRDGFVESVRAMRARVLDTLAPAEREREIKLGPGGLRDVEFTAQLLQL VHGRADESLRVRGTLDAVRALHAASYVTTRDARAFDEHYRWLRTLEHRIQLVHLRRTHLM PVKEEARRVVARSMRGAADRGPATGEDLQAEFTRVRRAVRGLHETVFYRPLLSTTAALSA EDVRLSAEAVRDRLAALGYRDPQGALRHIEALTQGVSRRAAVQRQLLPAMLGWFARGADP DGGLLAFRRLSESLGGTAWYLRMLRDSSDAARRLCLVLSGSRFVGDLLEHSPEAVAWVGD DRELDPRGAIQLWRQVDARLDRRVAAQEAPAAVRHVRQVRRSETLRVALADISGLLDLES VCGALADIDQVTVVGALRVAWRAVVGDAEPLTDVLVVAMGRQGGREITYGSDLDALFVHR PA >gi|289557655|gb|ADCD01000048.1| GENE 2 2359 - 3699 1362 446 aa, chain - ## HITS:1 COG:MT2280 KEGG:ns NR:ns ## COG: MT2280 COG0174 # Protein_GI_number: 15841714 # Func_class: E Amino acid transport and metabolism # Function: Glutamine synthetase # Organism: Mycobacterium tuberculosis CDC1551 # 1 444 1 445 446 574 64.0 1e-163 MDRQQDYVLRTIEDRDVRFVRLWFTDVVGTLKSVALSPAEVENAFTEGLGFDGSSIDGYT RISESDMLLQPDPATFQILPWRGDRGQSSRMFCDVLTPDGRPAPADPRHVLRRVLEKASD MGFSCFMHPEIEFYLLKSDQPGPDGRPVPVDRAGYFDNVPGSDAADFRRDAVTLLESMGI SVEFSHHENGPGQNEIDLRAADALTTADNVMTFRTVVKEVAAAQGTYATFMPKPFSEHPG SGMHTHISLFEGDSNAFYDPADEFRLSVTGRRFIAGLLRHSVEISAVTHQFVNSYKRLWG GGEAPSYVSWGHNNRSALVRVPLYKPDKAGSARIEYRGIDASANPYLAYALLLAAGLKGI EEGYELPESAAEDVSALTTHERRVLGHDPLPGTLHDALRAAEESEFVASVLGEHVFDALL RNKRQEWDDYRVEVTPYELRRYLSGL >gi|289557655|gb|ADCD01000048.1| GENE 3 2764 - 4602 918 612 aa, chain + ## HITS:1 COG:MT2284 KEGG:ns NR:ns ## COG: MT2284 COG0413 # Protein_GI_number: 15841718 # Func_class: H Coenzyme transport and metabolism # Function: Ketopantoate hydroxymethyltransferase # Organism: Mycobacterium tuberculosis CDC1551 # 340 610 12 281 281 264 56.0 3e-70 MAPGDVRGRLAAAPQALVGVHELVGDGADLHGVAQQARDEPAARHGEPELVRGVVEGVGV ALEEGDVGVHARAGVLGERLGHEGGVGALGCGHLLDHSAERHHVVRGGQRVGGAQVDLVL ARAVLVVAELHGDAHALQQRHGVAAEVGGVGAGHVVEVAGAVHRHGPAVGAGLVALEQVE LDLRVHEAGEAHVRGLLQHAAQHVARVGRGGAPVRGEDVAEHARALPAVSAPGQDLEGGR VRLQQHVRLGDAGVAVDRGAVEAQPLGERVLHLGRGQRHRLQRPDDVREPQAHEPHVPVL DGAEHVVLLSIHAATLDAPRRLRAMSAPDSSRKNDDVAAPYGPPAPSRYRTVHLQRAKDE GRRFAMLTTYDAMTAALFDEAGVEVLLVGDSVGNTVLGHPTTLPVTLDQMILFTQAVVRG AERALVVADLPFGSYEASPQQAVESAVRLVKESGAHAVKVEGDERFAEHVAAMTAAGVAV MAHIGFTPQSEHVLGGYRVQGRGAGAAERMTASARALEAAGAFAVLMEMVPSDVAAAVDA ALRVPTVGIGAGPGTTGQVLVWQDMLGLREGRVPRFVRQYARLHEVVGEAVRAYRADVLD GAFPAPEHGFEG >gi|289557655|gb|ADCD01000048.1| GENE 4 4671 - 4883 199 70 aa, chain - ## HITS:1 COG:no KEGG:Mlut_13450 NR:ns ## KEGG: Mlut_13450 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 70 1 70 70 90 100.0 2e-17 MTETSEFWYNVNTHQVEVGAQSDWSQLLGPFGTREEAQAAMDRVRANNEAADAEDERDDD WDSRPVDDAS >gi|289557655|gb|ADCD01000048.1| GENE 5 4920 - 5864 912 314 aa, chain + ## HITS:1 COG:ML1576 KEGG:ns NR:ns ## COG: ML1576 COG0024 # Protein_GI_number: 15827827 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionine aminopeptidase # Organism: Mycobacterium leprae # 35 313 7 284 285 367 64.0 1e-101 MSQRQNPAAPSSHNGPRPAGPAAPEPGSLAPVGTLTPGAPSPAPPVPAAIPRPEYVGKAT ADEGNASDVYDAAGVERIRAAGRLAAQAMEHTAAHIRPGVTTDELDRIAHAFLVDRGAYP SCLGYRGFPRSICTSINEVICHGIPDSTVLEDGDIVNLDITAYLDGVHGDHNRTYLVGDV DEESRLLVERTEEALRRGIRAVKPGRQVNVIGRAIESYAKRFGYGVVRDFIGHGVGVDFH SGLVIPHYDAAPAHDRLLVPGMVFTIEPMLTLGTIEWDQWDDGWTVVTRDRRRTAQFEHT IVVTDDGAEILTLP >gi|289557655|gb|ADCD01000048.1| GENE 6 5963 - 6709 658 248 aa, chain + ## HITS:1 COG:ML1023 KEGG:ns NR:ns ## COG: ML1023 COG1940 # Protein_GI_number: 15827493 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulator/sugar kinase # Organism: Mycobacterium leprae # 1 240 89 318 324 206 47.0 3e-53 MKGGLVRLGSGPKAGTLRGDRFRIPTPQPAMPEPVAATLAAITAELDGREKAPKPSAPLG VCFPSIVKDGVCLSANNIDHTWIGTDLRGTFEEHLRRPVTVVNDADAAGLAEARYGAGRG VRGLVHVITLGTGIGGAMIHDGGLVPNFEVGSLELDGVMAESRASAKARERDQLSWAEYA ERLQRFFSHVERIFSPDLFIVGGGISKRPDDYLPLLRLRTPIVPAQLQNNAGIVGAALAA HGSLADGN >gi|289557655|gb|ADCD01000048.1| GENE 7 6868 - 7362 468 164 aa, chain - ## HITS:1 COG:MT2791 KEGG:ns NR:ns ## COG: MT2791 COG1327 # Protein_GI_number: 15842256 # Func_class: K Transcription # Function: Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains # Organism: Mycobacterium tuberculosis CDC1551 # 1 146 1 146 154 188 68.0 3e-48 MHCPFCRHEDSRVVDSRSLDDGSAIRRRRQCQACGKRFTTMETTALTVVKRSGVAEPFDR SKVINGVRKACQGRPVTSDDLAMLAQEVEETVRATGNAEVDAHDVGLAILDPLRRLDQVA FLRFASVYRDFESLDDFEEAIAELRAGDGDDRGRPAVQPRLFTR >gi|289557655|gb|ADCD01000048.1| GENE 8 7406 - 11002 3521 1198 aa, chain - ## HITS:1 COG:MT1598 KEGG:ns NR:ns ## COG: MT1598 COG0587 # Protein_GI_number: 15841014 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit # Organism: Mycobacterium tuberculosis CDC1551 # 17 1198 10 1183 1184 1320 56.0 0 MTVSADARADAVKDGGFVHLHTHTEYSMLDGAAKLDDLFAEAQRLGMDSLAITDHGYLFG AYDFWSKAKAAGVKPIIGLEAYVAPGHQHRTDKEKTRWGEPHQRGDDVSGGGAYTHMTLL SETTEGMHNLFRMGSIASLDSVYAKWPRLDRELLSQYSKGLIATTGCPSGEVQTRLRLGQ YREAMQAASDFRDIFGKDNYYCEVMHHGLDIERRVVTDLRRLAKDLGLPFVATNDLHYTH EHDAKAHEALLALQSGSKLNEPSYDQGGSRFAFSGTEYYLKSPRQMRELFAELPEACDNT LLIAERCEVEFDTKANYMPVFPTPEGEDETSWLIKEVASGLAYRYPDGVPDHVRKQADYE LDVIISMGFPGYFLVVADFINWAKENGIRVGPGRGSGAGSMVAYALRITDLDPLKHGLIF ERFLNPDRVSMPDFDVDFDDRRRSEVIDYVTRKYGDERVTMIVTYGTIKTKQALKDSARV MDQPFSMGESLTKALPPAVMAKDIPLKDIEDPAAPRYGEAAPFRELVATDPVAKEVFETA KGLEGLKRQWGVHAAGVIMSSAPVIDVIPIMRRLQDGQVITQFDYPMAESLGLIKMDFLG LRNLTIISDAIENVKANQGVDLDLETLDVDDPAAYELLARGDTLGVFQLDGGPMRSLLKM MRPDNFEDISATIALYRPGPMGANSHTNYALRKNGQQEITPIHPELEEPLREILDTTYGL IVYQEQVMAIAQKVAGYSLGQADILRRAMGKKKKSELDKQYEAFHQGMLDRGYSEAAVKA LWDILLPFSDYAFNKAHSAAYGLVSYWTAYLKAHYPAEYMAALLTSVGDDKDKLAMYLNE CRHMGITVLPPDVNESHLTFTPVGRDIRFGMGAVRNVGANVVKGMVQGREDGGSYTGFGD FLAKVPLVVCNKRTIESMIKAGAFDSLGYARRALLAVHEEAVDATVAQKRKEDHGEFTFD LFALGGNDEDDSDAADGVAVPDLPEWAKKEKLAFEREMLGLYVSDHPLQGLDGVLAQHAD VQISRVLDDDGPADGAIVTIAGLITTLERRIAKSSGNAYARCEIEDLGGSMDVMFFGQVY APIAMMLAEDLVVAVKGRVQRRDDGSVSLSAMELTIPELSDGPGGPVRITLPAFKATEQV MGQLADVLRTHEGSSEVRLSLVGQRATQEFQLGPQFRVSPNPALFGDLKILLGPACLG >gi|289557655|gb|ADCD01000048.1| GENE 9 11178 - 12071 236 297 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|238855152|ref|ZP_04645474.1| pseudouridine synthase, RluA family [Lactobacillus jensenii 269-3] # 94 265 83 247 287 95 31 2e-19 MGMRPGLTERLEVTEAEAGRRVDAVLADAFGVPRSLLADWFSRGLVRAESRSGRRDRVLA KSAKAVAGETLAVDVPDDPDPLEVRAERVDALSILYEDEDLVAVDKPTGVAAHPSPGWVG PTVVGALAALGYHITTSGAPERQGIVHRLDVGTTGVMVVAKTERAYTAMKDQFRERVPEK VYHAVVQGIPDPLSGTVDAPIGRHPGHHWKFAVLDDGRPSVTHYETLEVFGRATLLEVHL ETGRTHQIRVHTSALRHPCVGDLTYGADPRMAAELGLTRQWLHAHRLAFPHPVTGSR >gi|289557655|gb|ADCD01000048.1| GENE 10 12076 - 12471 300 131 aa, chain - ## HITS:1 COG:Cgl2088 KEGG:ns NR:ns ## COG: Cgl2088 COG0597 # Protein_GI_number: 19553338 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Lipoprotein signal peptidase # Organism: Corynebacterium glutamicum # 1 113 54 167 193 95 45.0 2e-20 MQLGDSVVVIPGVLRWHYILNPGAAFSIGEDHTWVFTVIQAVVAVAALVGIARVRSTPWA LALGGLAGGVLGNLTDRLFRPPAFGRGHVVDMISVPHFAIFNVADSFIVCSVIGVALLVM TGRRLDGTREA >gi|289557655|gb|ADCD01000048.1| GENE 11 12603 - 13202 479 199 aa, chain - ## HITS:1 COG:MT2204 KEGG:ns NR:ns ## COG: MT2204 COG3599 # Protein_GI_number: 15841637 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division initiation protein # Organism: Mycobacterium tuberculosis CDC1551 # 1 194 1 242 260 58 27.0 1e-08 MALSWEDVVNKQFQPTKFREGYDQTEVDDFLDEIVAEFKRLIALNEQLESENAELRAGGA ASAAAPAADTPETAATPSPVEEPAPAAAPEAADAAATSAAGVLAMAQRLHDEHVAAGEQR STELVAEAEATAARLVSDAEEQKARTLEALAEEKAGLEGEVEQLRSFETDYRSRLTSYIE GQLREIRAQKRVEPPTPTA >gi|289557655|gb|ADCD01000048.1| GENE 12 13342 - 13638 321 98 aa, chain - ## HITS:1 COG:no KEGG:Mlut_13530 NR:ns ## KEGG: Mlut_13530 # Name: not_defined # Def: possible membrane protein # Organism: M.luteus # Pathway: not_defined # 1 98 1 98 98 105 98.0 4e-22 MQLLLALAYIALTVVLAALTVRIVLDVTQSFARHWRPTGAALVLASGVYGATDPLLRPVR RAVPPVNLGGIGLDVAFLIVFLGVVLLRVLVVSLAGVA >gi|289557655|gb|ADCD01000048.1| GENE 13 13646 - 14278 411 210 aa, chain - ## HITS:1 COG:MT2206 KEGG:ns NR:ns ## COG: MT2206 COG1799 # Protein_GI_number: 15841639 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Mycobacterium tuberculosis CDC1551 # 64 202 87 234 241 84 37.0 1e-16 MAGALKKTMIYLGLADGDEYDEQPRAAERETAPRHEVVEARRPTEPDTDPHMEAVRPAAV RDPEPAERPEPVTPSGSTAADPVEPRRPARPEPVDPGYRAPVTPIKRAAASSAEGASVHT LSTVHPRSYNDAKAIGESFRSGVPVIMNVTDLGENEAKRLVDFAAGLVFGLHGSISRITS KVFLLTPATVDVVGAEQGESGEADSPFDGD >gi|289557655|gb|ADCD01000048.1| GENE 14 14389 - 15177 713 262 aa, chain - ## HITS:1 COG:Cgl2103 KEGG:ns NR:ns ## COG: Cgl2103 COG0325 # Protein_GI_number: 19553353 # Func_class: R General function prediction only # Function: Predicted enzyme with a TIM-barrel fold # Organism: Corynebacterium glutamicum # 15 258 3 231 234 133 38.0 3e-31 MTAPATAGPTPTDPRAREIADALAAVRARIADAARDAGREAEPALVVVTKTHPAEDVVRL AALGVTDVGENRDQEARPKAEAVAAALGADAPRWHFVGQLQTNKAKYVVRYASVVESVDR PDLAEALSRALLLRREREPEAAIPDLECLVQVDVDDRADEDRPEGIGPRGGARPEDVPAL ADVVAGLPGLRLGGLMCVAPRGLDPEDAFRRLAALGAGLRQTHPEATTLSMGMSADLEAA VRAGATQVRIGSDVLGARDAVG >gi|289557655|gb|ADCD01000048.1| GENE 15 15174 - 15788 376 204 aa, chain - ## HITS:1 COG:Cgl2104 KEGG:ns NR:ns ## COG: Cgl2104 COG1496 # Protein_GI_number: 19553354 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Corynebacterium glutamicum # 1 191 54 241 246 102 36.0 4e-22 MGVPEGATLYLDQVHSADVVWADGPGRGGAPAPVADAAVSRDGSRPLAVMVADCLPVVLV DETTGATAVAHAGRRGLLEGVLEATVDRLLSLRPGTDRTGPGLRAWIGPGVCGRCYEVPA AMRAEAAARLPATAATTSWGTPALDLPAGAAQVLRARGVTTATIDVCTREDVRLFSHRRA PGEGRFAGLVWHTDPDATTPRGEA Prediction of potential genes in microbial genomes Time: Thu May 26 07:24:02 2011 Seq name: gi|289557646|gb|ADCD01000049.1| Micrococcus luteus SK58 ctg1119142780300, whole genome shotgun sequence Length of sequence - 15536 bp Number of predicted genes - 9, with homology - 8 Number of transcription units - 4, operones - 1 average op.length - 6.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + SSU_RRNA 539 - 2040 99.0 # AJ717368 [D:1..1502] # 16S ribosomal RNA # Micrococcus luteus # Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Micrococcineae; Micrococcaceae; Micrococcus. 1 1 Tu 1 . - CDS 2112 - 2378 117 ## - Prom 2516 - 2575 80.3 + LSU_RRNA 2480 - 5575 99.0 # X06484 [D:1..3094] # 23S ribosomal RNA # Micrococcus luteus # Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Micrococcineae; Micrococcaceae; Micrococcus. + 5S_RRNA 5764 - 5882 95.0 # X08000 [D:1..121] # 5S ribosomal RNA # Arthrobacter oxydans # Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Micrococcineae; Micrococcaceae; Arthrobacter. 2 2 Op 1 . + CDS 6078 - 7421 798 ## AAur_1649 hypothetical protein 3 2 Op 2 . + CDS 7418 - 8248 532 ## COG0647 Predicted sugar phosphatases of the HAD superfamily 4 2 Op 3 5/0.000 + CDS 8241 - 9083 460 ## COG1189 Predicted rRNA methylase 5 2 Op 4 17/0.000 + CDS 9197 - 10285 848 ## COG0061 Predicted sugar kinase 6 2 Op 5 . + CDS 10282 - 12024 1382 ## COG0497 ATPase involved in DNA repair 7 2 Op 6 . + CDS 12066 - 12773 633 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 8 3 Tu 1 . - CDS 12548 - 15406 1064 ## RMDY18_14050 hypothetical protein 9 4 Tu 1 . + CDS 13961 - 15505 1337 ## COG0504 CTP synthase (UTP-ammonia lyase) Predicted protein(s) >gi|289557646|gb|ADCD01000049.1| GENE 1 2112 - 2378 117 88 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MQQQKIRCSRPLCSSQTTTHTLSTNPQGQLHKVRRPETTTQPKARVPAVPGPNSVPTQLA ATNTTHSNHTHKGMTYSSTAGTTTGTIH >gi|289557646|gb|ADCD01000049.1| GENE 2 6078 - 7421 798 447 aa, chain + ## HITS:1 COG:no KEGG:AAur_1649 NR:ns ## KEGG: AAur_1649 # Name: not_defined # Def: hypothetical protein # Organism: A.aurescens # Pathway: not_defined # 18 372 246 622 698 198 48.0 5e-49 MAEDTPRERREDRGSEGRGPRGGNDGRRRGADRDGRPRSGAGDRRRSGGPHEDRRRGSAD GPRRQDGAADRGPRREESGRDGARRRFRPTSEDRRRGPRQDGGRPERRGAPTGPRREDRA ERPAHNPGDLRAANRADQERSPDIDPDVTGQELDRGTLKEINGLDERPASWVAKHLVMAG RYLDVDPALAFQHALAASRKGGRLSRVREAVALTAYAAGEYADALREFRTYRRMTGDDTH IAAQVDSERALGRTEKALQLAAEVDATRLDRAARVELAMVVSGIREDAGDLQGAHEALQI PELDRRRGYPFSPRLFQRQADVLLALGRRDEARLWARAVRVAEKALGVGGFADPEIIDVD TEPVEDPRDRRPSPRERRHERYAAEAGAEPTADGSPAEEPEAATEPTEAPRPETATEPPA AVDAPDEVDPNQLSLFDALEAPEADER >gi|289557646|gb|ADCD01000049.1| GENE 3 7418 - 8248 532 276 aa, chain + ## HITS:1 COG:Cgl1376 KEGG:ns NR:ns ## COG: Cgl1376 COG0647 # Protein_GI_number: 19552626 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted sugar phosphatases of the HAD superfamily # Organism: Corynebacterium glutamicum # 9 269 7 270 328 176 45.0 5e-44 MSTTFFDGHDGLLCDLDGVVYAGGGAIAGAVETLSTLQERGVPVGFVTNNASRAPESVAE HLRTLGVPAQAGQVFGSAPAGVDLLEETLGRRTGRVLVVGSAYLRAVVEERGYEVVASAA QRPDAVVQGFDPGLGWADLAEAAYAVRAGATWVATNLDASIPRAEGIAPGNGALVEAVGR ATGTAPVAAGKPEPRLFRTAAEALGLARPLVVGDRLDTDIRGGNAAGFDTVLVLTGIDTR ETAAAAPGPDRPTWVRAHLPALLAGGAEGSADPRRG >gi|289557646|gb|ADCD01000049.1| GENE 4 8241 - 9083 460 280 aa, chain + ## HITS:1 COG:ML1358 KEGG:ns NR:ns ## COG: ML1358 COG1189 # Protein_GI_number: 15827705 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted rRNA methylase # Organism: Mycobacterium leprae # 1 244 1 244 269 197 54.0 1e-50 MAETARADVALAARGLARSRTEGAALIRAGQVLLDGRPVRRPADRVAADATLRLRDPGPR YVSRAAHKLVSALEAFPDVGVAGRRALDAGASTGGFTQVLLERGAERVAAVDVGHDQLAP PVRADPRVLVREGLNVRDLTAEDIDGPVDLVVSDLSFISLRLVLAPLAGVCRPGAELLLM VKPQFEVGRRALPRSGVVTDPDARRDAVVGVAAAALGAGLAPHGLARSGLAGQDGNAEFF LRLRRPDATAAHDPASRTSPATPAGERAAAWVRGAHIDWS >gi|289557646|gb|ADCD01000049.1| GENE 5 9197 - 10285 848 362 aa, chain + ## HITS:1 COG:ML1359 KEGG:ns NR:ns ## COG: ML1359 COG0061 # Protein_GI_number: 15827706 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted sugar kinase # Organism: Mycobacterium leprae # 7 303 9 310 311 244 44.0 2e-64 MPYTPGRRVLVLTHTGREDAISAALQATRMFAEEGLVSVMLEQDVAAIRAAAGDPPEFAP EALGVDCELEDITLGLVLGGDGSVLRAADFVRGYNVPLLAVNLGHVGFLAESERTDLHRT VQAIASESYVVIERMALDVVVHVEGREVARTWALNEASVEKSHRERMLEVVVSVDNSPLT AFGCDGVVLATPTGSTAYAFSGGGPVVWPSVEALLCVPISAHALFTRPLVVGPRSTIGVD VLTRTRETGVLWCDGRRTVELPPQARIEVSRSAEPVRLARLNPTPFAERLVRKFRLPTDG WRGPVTAQERAGVLHAVETVEPRHAGPRPDVVEPATMPLSVLSPADIQRHCDRGARHPGE DA >gi|289557646|gb|ADCD01000049.1| GENE 6 10282 - 12024 1382 580 aa, chain + ## HITS:1 COG:Cgl1380 KEGG:ns NR:ns ## COG: Cgl1380 COG0497 # Protein_GI_number: 19552630 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA repair # Organism: Corynebacterium glutamicum # 1 579 1 577 593 334 44.0 3e-91 MIDHLRISGLGVIGEATVDLDPGFTVVTGETGAGKTMVVTALGLLLGARADAGAVRRGSS RAVVDAGVRVAADHAALRLAQDAGAVVDEGDDGTRDLVLSRSVTASGEGTRSRAAAGGRS VPVGLLSEIGATLVAVHGQNDQVRLQGADAQRHALDAFGGAELAAALRAYRADHAAWAAA RREREELTTHRQERAREAEALQRSLEEIDLADPQEGEDEELRALIRRLEDVEELRAASGE AHARLAGPDVDAMDETPGAVSLVEGARQAVLAAPGDDPELAAAAARLAEAAVVLTDIAGD LARYTADLDADAASDLDAAQSRLAELTRLQRLYGPELADVIDWARTQRPRLDELQGDSGR LEELEAEVDRLDAALRERAATLTALRTAAAERLETAVTEELHALFMPDASFHVGLTPVAG DGLGPYGAEDVTLALRPHAGVEPRPLGRGASGGELSRVMLALEVVLAATDPVPTFVFDEV DAGVGGEAAVRIGARLARLARHVQVIAVTHLPQVAAYADRHVRVEKNSDPAAGVTTSDVV TLTADERVEELARMLAGHGDSAAAREHARELLESSARERG >gi|289557646|gb|ADCD01000049.1| GENE 7 12066 - 12773 633 235 aa, chain + ## HITS:1 COG:Cgl1384 KEGG:ns NR:ns ## COG: Cgl1384 COG0494 # Protein_GI_number: 19552634 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Corynebacterium glutamicum # 16 222 5 200 223 106 37.0 3e-23 MPEIPASAGRSPLRDLHVPRPVKKSKTVYEGRVWNIARESFRLDPADKSREPLTRELMVH PGAVAILAVRTKLTTTGPREQVALVRQYRHPVGMELWEIPAGLRDVDGEDLHQVAVRELA EEADLRAREWHTLIDYYTTPGGSSEAIRVFLARQIEEIPDGQRHTRQDEEAAMPLVWVGL DEVTDAVLDGRVHNPSTVVAVLALGAHRAQGWRRLRPVDAPFVPDRHGPGADWPA >gi|289557646|gb|ADCD01000049.1| GENE 8 12548 - 15406 1064 952 aa, chain - ## HITS:1 COG:no KEGG:RMDY18_14050 NR:ns ## KEGG: RMDY18_14050 # Name: not_defined # Def: hypothetical protein # Organism: R.mucilaginosa # Pathway: not_defined # 3 549 14 566 605 318 47.0 5e-85 MGLRGHVVRVHVPGQLHELHKGAVRGGAADREAGLLEAVAVGVVHLVAVAVALGHLGGAV RLGHHGARAQGRGEGAQAHGAAEVPLAGHDLLLLGHGGDHGRGGLRVELGGVRVLQAEDV AGVLDDHGLQAQAQTQRRDPLLAGVPQRAELALEPAHAEAAGHTHGVDVRERRRRALRGG ALVRGHPADAHLGPVGEATGAQRLGDGQVGVRQVHVLAHERHGELMLRVVHGVHERVPGG PVHVLELQVQGLHHMGVEALVVDDAGDVVDGGGVGAVDDGVLRDVAHAGNLAADVVGDGP VRAQHDRVRLDADRAQGGHGVLGGLGLELLRGADVRHEGDVQEEDVVAADVLADLAGGLE EGLRLDVADGAADLRDDHVRGGAVAAGLRGQAHPAADLVGDVRDDLDGVPEVLAAALAGD HGGVHLAGGHVVQAVEVLVEEALVVADVQVRLGAVLGNEHLAVLERVHGARVHVEVGVEL LHHHPEPARLEQVAERGGREPLAEGGGDTAGHEHVTGDARGRLSTRSSFHHGSRAYQVRG SARARMRGGVDLAQGVHGDEGVHLRGGHGRVPEQLLDHADVRAAGQQVRGEAVAQGVGRD VRLEAGALGRPLQHGPRGLPGEPAPAGVDEQGGRGACDSRHDRGPSPHQPCVERGGRVGA DRHHALLGPLAEQADHGLAAVVPGLREPHHVVDVEADHLGDAGAGAVEELEQRAVPQSGG GVDGHGLQQRRHLLYGERLRQAVARLRRVDVAGGVGGRESLEGPEPVQAAHGREHAGRRA DREGPPAVLAGAQRPQEAGDVAGVDVGGGAHPVGFEPAAVALEVAAVGGQRVRGEAPLDG QVLQVAAERGRERGLRAPAPTTPTGLGLAAPPGGRVGAHAGQSAPGPWRSGTNGASTGRR RRQPWARWAPRASTATTVDGLCTRPSRTASVTSSRPTHTSGMAASSSCRVCR >gi|289557646|gb|ADCD01000049.1| GENE 9 13961 - 15505 1337 514 aa, chain + ## HITS:1 COG:ML1363 KEGG:ns NR:ns ## COG: ML1363 COG0504 # Protein_GI_number: 15827710 # Func_class: F Nucleotide transport and metabolism # Function: CTP synthase (UTP-ammonia lyase) # Organism: Mycobacterium leprae # 1 504 44 546 590 720 70.0 0 MQKLDPYLNVDPGTMNPFQHGEVFVTEDGAETDLDIGHYERFLDEDLDGLDNVTTGQVYS TVIARERRGEYLGDTVQVIPHITDEICRRMRLPAEPRGDRPAPDVIITEIGGTVGDIESQ PFLEAARQVRQDVGRDDVFFLHVSLVPYIGPSQELKTKPTQHSVAALRSIGIQPDAIVLR SDRAVPDDVRGKIARMCDVPQDAVVNCADAPSIYDIPRVIHDQGLDAHVVQSLDLKFKDV DWTAWDALMDAVHHPEHELTVALVGKYVDLPDAYLSVTEALRAGGFAHRAKVGIRWVAAD ECATPEGAAAALADVDAVCVPGGFGVRGLEGKLGALRHAREQRIPTLGLCLGLQSMVIEY ARNVLGLEDADSTEFDPETASPVIATMAEQEQIVAGEGDLGGTMRLGAFPATLRPGSVVA EAYGTTEVTERHRHRYEVNNAYRDRLEEAGLAICGTSPDGALVEFVELPRDVHPYYVSTQ AHPEFSSRPTRPHPLFAGLVAAGLARRADAAARR Prediction of potential genes in microbial genomes Time: Thu May 26 07:24:34 2011 Seq name: gi|289557630|gb|ADCD01000050.1| Micrococcus luteus SK58 ctg1119142780283, whole genome shotgun sequence Length of sequence - 13572 bp Number of predicted genes - 17, with homology - 15 Number of transcription units - 11, operones - 4 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 256 62 ## KRH_00540 putative oxidoreductase 2 2 Tu 1 . + CDS 442 - 1563 976 ## COG3386 Gluconolactonase 3 3 Tu 1 . - CDS 1738 - 2148 328 ## Mlut_18430 protein of unknown function (DUF326) 4 4 Tu 1 . + CDS 2599 - 2991 174 ## PROTEIN SUPPORTED gi|145223395|ref|YP_001134073.1| NLP/P60 protein 5 5 Tu 1 . - CDS 3051 - 3323 89 ## gi|289705636|ref|ZP_06502024.1| hypothetical protein HMPREF0569_0074 6 6 Op 1 . + CDS 3189 - 3431 182 ## Ksed_00640 transposase family protein 7 6 Op 2 6/0.000 + CDS 3484 - 4887 1120 ## COG2610 H+/gluconate symporter and related permeases 8 6 Op 3 . + CDS 4988 - 6004 239 ## COG1929 Glycerate kinase - Term 6146 - 6198 2.4 9 7 Tu 1 . - CDS 6249 - 6998 356 ## - Term 7036 - 7078 -0.9 10 8 Op 1 . - CDS 7153 - 8871 2091 ## Namu_2679 hypothetical protein 11 8 Op 2 . - CDS 8917 - 10002 936 ## COG0012 Predicted GTPase, probable translation factor 12 9 Tu 1 . + CDS 9661 - 10284 102 ## RMDY18_05730 UDP-N-acetylglucosamine enolpyruvyl transferase 13 10 Op 1 . - CDS 10871 - 11353 483 ## COG0071 Molecular chaperone (small heat shock protein) 14 10 Op 2 . - CDS 11287 - 11529 92 ## 15 11 Op 1 . + CDS 11581 - 12552 825 ## COG1131 ABC-type multidrug transport system, ATPase component 16 11 Op 2 . + CDS 12549 - 13343 638 ## Mlut_16230 ABC-2 type transporter 17 11 Op 3 . + CDS 13340 - 13571 74 ## Mlut_16240 signal transduction histidine kinase Predicted protein(s) >gi|289557630|gb|ADCD01000050.1| GENE 1 2 - 256 62 84 aa, chain + ## HITS:1 COG:no KEGG:KRH_00540 NR:ns ## KEGG: KRH_00540 # Name: not_defined # Def: putative oxidoreductase # Organism: K.rhizophila # Pathway: Glycine, serine and threonine metabolism [PATH:krh00260]; Metabolic pathways [PATH:krh01100] # 1 71 53 123 376 130 94.0 1e-29 GGESRIFRHAHDDPRLVAFARESRGVWDEWAEHFDVELVSSDGVLAIGDSVLARLRVLNQ VGGVEAHEIDAVAATLLSAVARTS >gi|289557630|gb|ADCD01000050.1| GENE 2 442 - 1563 976 373 aa, chain + ## HITS:1 COG:DR1790 KEGG:ns NR:ns ## COG: DR1790 COG3386 # Protein_GI_number: 15806791 # Func_class: G Carbohydrate transport and metabolism # Function: Gluconolactonase # Organism: Deinococcus radiodurans # 7 373 28 388 388 337 50.0 2e-92 MENRSESLPAEQPVGELEEVAHFHGPMLTGVTVSHRGRIFVNYPKWGDDVAFTVAEIRDG EAVAYPNEAINRTDSDDLANTLVSVQSVVVDPADRLWILDTGSPLFKPTTYGGPKLVCVD LTSDTVVKTILFPQDVALPTSYLNDVRFDLRRGAEGVAYLTDSSDQGPNALVVVDLATGQ SWRRLHEHPSTKAEPLTDFVPVVEGRPMVARQEDGTVAPAIAMGADGIAIGADGARLYYC PLASRRLYSVATDALVDRALDEAAVAATVRDEGDKGGAGDGLESDAQGNVYATNYEHNAV LRRRVDTVGAWETVVSDPRLLWPDTLSVAADGYLYITANQLHRQADYRQGQDERVKPYTL FRTRIDARPVLLR >gi|289557630|gb|ADCD01000050.1| GENE 3 1738 - 2148 328 136 aa, chain - ## HITS:1 COG:no KEGG:Mlut_18430 NR:ns ## KEGG: Mlut_18430 # Name: not_defined # Def: protein of unknown function (DUF326) # Organism: M.luteus # Pathway: not_defined # 1 136 1 136 136 169 85.0 2e-41 MTHHVSSMLETYPKDLGDIDRQKLAECIEACFECAQTCTACADACLAEDMVAELRQCIRF NLDCADICATTGAVLSRQTGNNVETTRALLEACRTACKTCGDECASHAEMHEHCKICAEA CRRCERACAELLASLG >gi|289557630|gb|ADCD01000050.1| GENE 4 2599 - 2991 174 130 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|145223395|ref|YP_001134073.1| NLP/P60 protein [Mycobacterium gilvum PYR-GCK] # 1 120 232 341 348 71 39 3e-12 SSSSTGWGAAVQWATAKAADPGVGYVWGGNGPTGYDCSGFIQNAFAQADIELPLNSKAQY AAAGQYVSLDDLQVGDLVFWSNNGSASGIYHVAMYIGDGQIAHARNPQMGVAVTAVDYSP WNMMGTAARY >gi|289557630|gb|ADCD01000050.1| GENE 5 3051 - 3323 89 90 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|289705636|ref|ZP_06502024.1| ## NR: gi|289705636|ref|ZP_06502024.1| hypothetical protein HMPREF0569_0074 [Micrococcus luteus SK58] # 42 90 1 49 49 85 100.0 1e-15 MSRATLYRRIRAIPAANELSWRCPIVCKRQQGRGSHPDLCHMTRHHREDHRTGPTGRGPR HVDVRPRELLACPVGFGQRDSGVRTVAEVS >gi|289557630|gb|ADCD01000050.1| GENE 6 3189 - 3431 182 80 aa, chain + ## HITS:1 COG:no KEGG:Ksed_00640 NR:ns ## KEGG: Ksed_00640 # Name: not_defined # Def: transposase family protein # Organism: K.sedentarius # Pathway: not_defined # 46 79 101 134 136 61 85.0 8e-09 MAGHMTQVWMAPPPLLSLADDGAAPRELICSRYGADASVEGGSGHALAKQWRGLATRYDK PAITYRAAVTLCAIFTWLRA >gi|289557630|gb|ADCD01000050.1| GENE 7 3484 - 4887 1120 467 aa, chain + ## HITS:1 COG:PM1740 KEGG:ns NR:ns ## COG: PM1740 COG2610 # Protein_GI_number: 15603605 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism # Function: H+/gluconate symporter and related permeases # Organism: Pasteurella multocida # 1 467 1 458 458 426 53.0 1e-119 MTGIPFLLVFILAVALMIVMISRWKIHPFLSIMAVAFVLGIIGGIPLVKSTGAEGEEPAK GIADVIGEGFSGIFTSIGIVIILGTLIGLILERTGGAFRIADALVRVVGKRYPVLAMQLM GWVVSIPVFCDSGFVILNPIRKALARRTGASPVAMTVALAAGLYTSHVFIPPTPGPIAAA QNLGIGDHLLLVIGLGVLVSIPALLVAYLYALYIGKRVSSPEETGTEDADELEAAYDALR RSYGRMPGTAASFAPIIAPILLMALGSLASVLKWTGPAGDFARFLGTPMIALAVGTLCAV GVLFSVRRGETFYDLTEETLRVVGPILFITAAGGVLGRVIAATDLVTFIESNAAQLSVIG LFFPFLVSAVLKTAQGSSTVALTTTSAMVFPMTPALGFETPVASALVVMAIAAGAMTVSH ANDSYFWVVTNFSGMTPSQGYRTQTMVTLLMGLTSIVFIWILGLVLV >gi|289557630|gb|ADCD01000050.1| GENE 8 4988 - 6004 239 338 aa, chain + ## HITS:1 COG:BH0555 KEGG:ns NR:ns ## COG: BH0555 COG1929 # Protein_GI_number: 15613118 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerate kinase # Organism: Bacillus halodurans # 7 317 32 341 380 219 45.0 6e-57 MTGLASVTDAEVLVVPIADGGEGTVEAFVAAAGGALRSATVCGVFFGERVPVHYGLIETD VAVVETASCAGLPLASGREDTGRATTFGVGEQILDAVSAGARKVIVGAGGSATTDGGTGA AAALGVRFLDAAGEEFVPTGDTLTRIARIDSAPARDRFRDVEVEVMCDISNPLTGSRGAA HVFGPQKGADPASVASLDTGLVHLAGVVERDLGVAIDALPGAGAAGGLAGGLHAFVGATL KPGIDVVLETAGFHDLVKTADLVITGEGRIDGQSLAGKVPIGVAQAVRAAGCAIPVIVLA GSVGQDADTLYDEGITAIVPIGRGPQDLATAIRRTAED >gi|289557630|gb|ADCD01000050.1| GENE 9 6249 - 6998 356 249 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MMTPLNARAAQRAIPCRVACPQDSGAWTGRCRPSEPTMPVLAAVKASHDVDRFTVEMLSM ASKLAIFPLSLLAYWLIDARACSSSAVRRRAYGLGAAVRAFDAPDTAPGSVMAVAVVAAR PPRLDTWNALSARLPVERERISAISLIILPKLVGTAAGGIFAQCGWMPSARALRTAARAR PASGRSGRRESSVLEQCRATVGGGVDLLGTQQLRQLAPQLTVEALEKPGDAVALRLAQSL AELTPQHCP >gi|289557630|gb|ADCD01000050.1| GENE 10 7153 - 8871 2091 572 aa, chain - ## HITS:1 COG:no KEGG:Namu_2679 NR:ns ## KEGG: Namu_2679 # Name: not_defined # Def: hypothetical protein # Organism: N.multipartita # Pathway: not_defined # 3 555 4 553 554 275 32.0 2e-72 MELQERQIRKRLRDDFEPHIDLSDVEQHHGEEQLAKFRTTRALAALTLCAHANLDVVAAC GAVVDESGDEGLDAIGYSPSRQELYLIQAKTSSGSPSPSEVSAFCDGIQHVLNWEWSMLG PKVRARRQEIEAALEDSNCRVIAVFSHLGKGDPNKQAVAHSDRLLKTINSSGEILDIRYE DLKDNYNRRHVSNGFGAIDHELQLERWTTLGDYRSEIIGVISGDQLARLVVDYGDAIFDR NIRTVLSSTPTNETIDKTIESDPSHFWYFNNGITVVADSIKCPHRTAPRPNDESFLLKSL NVVNGAQTCGALARALKAGVNLEEVRVTIRIISTQGQSNDFEQLVTRYTNTQNQITNKEF VSLDNVQQELSDLLRGEDILYAYKTGQVDGASYKFSFDLEDATRAMACLTGPRNATRAKR EIGRMWADLSAAPYTDLFNSRLKAERLYNAVHFWRQVNGLIDGIEVEYEAREGRIVSNSR YIACSVLMKQYQALGNHFDEINSAVDNWVSHNSTAISDLMKLIIRIHEEVNPQGYPMSFF KNVEKSADFYYKVTERIRGEISFSNAPCKLNE >gi|289557630|gb|ADCD01000050.1| GENE 11 8917 - 10002 936 361 aa, chain - ## HITS:1 COG:Cgl1003 KEGG:ns NR:ns ## COG: Cgl1003 COG0012 # Protein_GI_number: 19552253 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted GTPase, probable translation factor # Organism: Corynebacterium glutamicum # 1 361 1 361 361 457 71.0 1e-128 MALTIGFVGLPNVGKSTLFNALTRQTVLAANYPFATIEPNVGVVNLPDERLPQLAEIFGS ERILPATVSFVDIAGIVKGASEGEGLGNQFLANIREAHAIAQVVRAFDDGDVVHVDGKVD PASDMETINTELIIADMQTVEKAIPRVEKEVNGKKKEPADLEALQAALAVLERGETIFAA RDKDKLDMDRLRELSLLTAKPFIYVFNSDEGVLGDEAKQQELRDLVAPADAVFLDAKLES DLVELSKEEAAEMLEMAGQDESGLDQLARVGFSTLGLQTYLTAGPKETRAWTIPVGATAP EAAGVIHTDFQRGFIKAEIVSFDDLIAAGSMADAKAAGKVRMEGKDYVMKDGDVVEFRFN V >gi|289557630|gb|ADCD01000050.1| GENE 12 9661 - 10284 102 207 aa, chain + ## HITS:1 COG:no KEGG:RMDY18_05730 NR:ns ## KEGG: RMDY18_05730 # Name: not_defined # Def: UDP-N-acetylglucosamine enolpyruvyl transferase # Organism: R.mucilaginosa # Pathway: not_defined # 1 111 268 378 378 102 54.0 1e-20 MDDVAVVERAHHLGDRVGLADVRQELVAQALPLGGALHDAGDVHEGYRGRQNALGAEDLG QLRQALIRQVHHAHVRLDRRERVVRREHGLARQRVEQGRLAHVGQSHESDSQSHSPAVYR RARRGGGVPHRPRSVGRTSIPARCVGRKRALPCSGGRTGRVFASGGRNLRSPAHGTQRPS GHGARQPQPPPPRNPETRTTQHASPPR >gi|289557630|gb|ADCD01000050.1| GENE 13 10871 - 11353 483 160 aa, chain - ## HITS:1 COG:ML1795 KEGG:ns NR:ns ## COG: ML1795 COG0071 # Protein_GI_number: 15827955 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone (small heat shock protein) # Organism: Mycobacterium leprae # 14 140 7 131 148 110 51.0 1e-24 MARPIDPFREMERPFREMERLVNGLTTRATGTASMPMNLYREGDAFVAEVELPGVDPASI DVDVEERTLTVRAERKEDPAREDRRWLTRERSAGTFARQLTLGEGLALDRIQADYSDGVL TLTIPVAEQAKPRKISVTHGGAAPVAAETVEGETAEASGE >gi|289557630|gb|ADCD01000050.1| GENE 14 11287 - 11529 92 80 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRHDGCHGWGRAEAGGPSSRKLSGLHADFWNRFAGRAVVVVRRRGVSGAHPTPEESEPTW PVPSIRSVRWSVPSARWSAW >gi|289557630|gb|ADCD01000050.1| GENE 15 11581 - 12552 825 323 aa, chain + ## HITS:1 COG:BS_yvfR KEGG:ns NR:ns ## COG: BS_yvfR COG1131 # Protein_GI_number: 16080462 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Bacillus subtilis # 6 217 5 217 301 169 40.0 8e-42 MSNAPALATRGLTRRFGPVRAVDGVDLTVPAGEVLALLGPNGAGKTTLLDMALGFSPPSD GTVRVLGSEPVAAVRQGRVGAVLQTGGLLEDLSVRETVAMVAGCHRRHIGVPAALERAGL TGLAGRRVKKCSGGERQRLRFALALLTDPELLILDEPTAGMDVRARHDFWDTMHAEADRG RTIVFATHFLPEAEDFADRIVLMREGRIHADGTPAELATGGSVTLTGRWAGGGDDPDVSA RLAAALGLPQDAVQLEPQHPSPGRLRVRVPAGGSVTGDDVARHLLNERLVEDLAITHASL DDVFLSLTDAGQPAPSEPQESLT >gi|289557630|gb|ADCD01000050.1| GENE 16 12549 - 13343 638 264 aa, chain + ## HITS:1 COG:no KEGG:Mlut_16230 NR:ns ## KEGG: Mlut_16230 # Name: not_defined # Def: ABC-2 type transporter # Organism: M.luteus # Pathway: ABC transporters [PATH:mlu02010] # 1 264 1 264 264 386 96.0 1e-106 MSTTTTAPGRLVGYARREFVRNVRMIESSFFIVVLPVALYLMFGALSDWGDLPVGHGNVS AYTMTGMAVYGAVMATTSIAGSAAVERQSGWGRQLSLTALTPGAYLAGKCLVALATAALP VLAVLAAGALTGAELDGPLRWLTTGALALVSSLPFALFGLAAALLFRSEAAVSAASGILV VFGFLGNLFVPLSGIMLDIGRFTPVYGAGALARWPQMEGERAPMGTERAAAADPLWLPLV NLLAWTAVFAVVCLLASRSRTARA >gi|289557630|gb|ADCD01000050.1| GENE 17 13340 - 13571 74 77 aa, chain + ## HITS:1 COG:no KEGG:Mlut_16240 NR:ns ## KEGG: Mlut_16240 # Name: not_defined # Def: signal transduction histidine kinase # Organism: M.luteus # Pathway: Two-component system [PATH:mlu02020] # 1 75 1 76 408 106 80.0 3e-22 MSPDGGSPAPARPAVGTAEHDPAVLPLHLWPSTLGFAGVWLISFGFVLVELLRRASRPGT GGASDPGGGGIAVFVSS Prediction of potential genes in microbial genomes Time: Thu May 26 07:25:17 2011 Seq name: gi|289557627|gb|ADCD01000051.1| Micrococcus luteus SK58 ctg1119142776948, whole genome shotgun sequence Length of sequence - 2272 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 16 - 1506 1355 ## COG2252 Permeases 2 2 Tu 1 . + CDS 1572 - 2271 477 ## Mlut_17830 major facilitator superfamily transporter Predicted protein(s) >gi|289557627|gb|ADCD01000051.1| GENE 1 16 - 1506 1355 496 aa, chain - ## HITS:1 COG:Cgl0801 KEGG:ns NR:ns ## COG: Cgl0801 COG2252 # Protein_GI_number: 19552051 # Func_class: R General function prediction only # Function: Permeases # Organism: Corynebacterium glutamicum # 44 494 1 453 453 369 52.0 1e-102 MASRTASPPPSPAPSPAAPRGALDRYFRITERGSSVGQEFRGGLATFLAMSYIVVLNPLI LSGPDSAGNTLGIPAVAAVTALVAGVMTIVMGVWARHPFAVAAGLGVSAFVSITIATTPG LTWPQLMGLVTLAGLVMLLLVVTGFRRAVFDAVPEALKSGIVVGIGLFIALIGLVNAGFV RRLPDAADTTVPVGLGTGGELEGWPVLVFVVGLLLTAVLVIRKVRGAILIGIVAATILAN VLEAVFHIGPSVDADGNAVPTGWSLIAPSLPEWTAPDLHLLGSVDLFGAFTSVGGLMASL LVFAILLSVFFDAMGVSVGLAREAGTVNPDGSIPDLNRVLAADALAVAVGGGASGSAHQI FVESGTGIGEGARTGLASVFTGLFFLAAVFLSPLIHLVPFEAVAPALVVVGFMMCQHVVQ IDWSDPGAAFPAFLTFILMPFTYSIVNGIGAGVVAYAVIRTGQGRGREVHPLLWFVALAF VAYFGLGVVRASLGLN >gi|289557627|gb|ADCD01000051.1| GENE 2 1572 - 2271 477 233 aa, chain + ## HITS:1 COG:no KEGG:Mlut_17830 NR:ns ## KEGG: Mlut_17830 # Name: not_defined # Def: major facilitator superfamily transporter # Organism: M.luteus # Pathway: not_defined # 1 233 1 233 432 212 98.0 1e-53 MRPRSASAARTREALRDAVQIYAPSTVYAVGLGAMTPALAVAALALGLDAARAAAVVLLV GLGSLVANGPASALAARAGERVTMVVSAVLGTAGAGLAWATTAGVSSGPSAAGVAEPGRL ALFLAAVLAVGMAGAGFNLARQAYLAVAVPATHRARAMSTLGGTVRIGTFLGPFLGAAAQ APLGLDGAFAAAAAAMAVGALLCLRIRDLPVPASGPAAGEQPGPAGRPRLLDV Prediction of potential genes in microbial genomes Time: Thu May 26 07:25:23 2011 Seq name: gi|289557626|gb|ADCD01000052.1| Micrococcus luteus SK58 ctg1119142776955, whole genome shotgun sequence Length of sequence - 639 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 594 1229 ## PCC7424_3406 hypothetical protein Predicted protein(s) >gi|289557626|gb|ADCD01000052.1| GENE 1 3 - 594 1229 197 aa, chain - ## HITS:1 COG:no KEGG:PCC7424_3406 NR:ns ## KEGG: PCC7424_3406 # Name: not_defined # Def: hypothetical protein # Organism: Cyanothece_PCC7424 # Pathway: not_defined # 7 185 1 181 222 163 45.0 4e-39 MRSRIKMSNKIQQRFDDLLSLANRISESTFTSRSQFSSGTYVDNELLVQWVTKTENLVHS ICGSTSTYYVTFTEANQIKGLETNEGKFKRLKSIFIAIKDDFESGYLTSYKSIIQAELFD SELEQAKSLLEAGYFTAAAVIAGTVLETSLRELCERNSLPIGKLDRMNADLAKQGLYNSI QQKKIHCICRNQKQRCT Prediction of potential genes in microbial genomes Time: Thu May 26 07:25:37 2011 Seq name: gi|289557599|gb|ADCD01000053.1| Micrococcus luteus SK58 ctg1119142780323, whole genome shotgun sequence Length of sequence - 29336 bp Number of predicted genes - 25, with homology - 25 Number of transcription units - 8, operones - 6 average op.length - 3.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 124 - 1560 898 ## COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases 2 1 Op 2 . - CDS 1557 - 2825 835 ## COG0007 Uroporphyrinogen-III methylase 3 1 Op 3 24/0.000 - CDS 2822 - 3745 657 ## COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component 4 1 Op 4 . - CDS 3735 - 4460 244 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 5 1 Op 5 18/0.000 - CDS 4492 - 5832 1074 ## COG2895 GTPases - Sulfate adenylate transferase subunit 1 6 1 Op 6 4/0.000 - CDS 5832 - 6767 830 ## COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes 7 1 Op 7 11/0.000 - CDS 6800 - 7525 556 ## COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes 8 1 Op 8 . - CDS 7522 - 9237 1387 ## COG0155 Sulfite reductase, beta subunit (hemoprotein) 9 2 Op 1 . - CDS 9354 - 10103 512 ## COG2138 Uncharacterized conserved protein 10 2 Op 2 . - CDS 10147 - 10893 534 ## COG4221 Short-chain alcohol dehydrogenase of unknown specificity 11 3 Op 1 . + CDS 10871 - 13753 2676 ## COG0525 Valyl-tRNA synthetase 12 3 Op 2 . + CDS 13819 - 14154 170 ## Mlut_09920 predicted membrane protein 13 3 Op 3 . + CDS 14252 - 14536 233 ## gi|289705664|ref|ZP_06502049.1| hypothetical protein HMPREF0569_1537 + Term 14683 - 14717 1.1 14 4 Op 1 . - CDS 14672 - 15286 651 ## Mlut_09910 DsbA-like thioredoxin 15 4 Op 2 24/0.000 - CDS 15336 - 16634 272 ## PROTEIN SUPPORTED gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 16 4 Op 3 5/0.000 - CDS 16807 - 17439 735 ## COG0740 Protease subunit of ATP-dependent Clp proteases 17 4 Op 4 29/0.000 - CDS 17514 - 18128 662 ## COG0740 Protease subunit of ATP-dependent Clp proteases 18 4 Op 5 . - CDS 18396 - 19760 1115 ## COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) - TRNA 19803 - 19876 79.2 # Pro TGG 0 0 19 4 Op 6 . - CDS 19960 - 20853 211 ## PROTEIN SUPPORTED gi|163797523|ref|ZP_02191474.1| 50S ribosomal protein L9 - Prom 20947 - 21006 76.8 + TRNA 20930 - 21003 74.2 # Gly TCC 0 0 + Prom 20930 - 20989 77.3 20 5 Tu 1 . + CDS 21036 - 22712 722 ## RMDY18_08600 signal transduction histidine kinase 21 6 Op 1 . - CDS 22595 - 24163 1126 ## COG2072 Predicted flavoprotein involved in K+ transport 22 6 Op 2 . - CDS 24178 - 25032 648 ## cgR_2327 hypothetical protein 23 7 Tu 1 . + CDS 25257 - 25985 400 ## cgR_2325 hypothetical protein 24 8 Op 1 . + CDS 26142 - 28763 2209 ## COG0308 Aminopeptidase N 25 8 Op 2 . + CDS 28855 - 29335 422 ## COG1764 Predicted redox protein, regulator of disulfide bond formation Predicted protein(s) >gi|289557599|gb|ADCD01000053.1| GENE 1 124 - 1560 898 478 aa, chain - ## HITS:1 COG:Cgl2757 KEGG:ns NR:ns ## COG: Cgl2757 COG0493 # Protein_GI_number: 19554007 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: NADPH-dependent glutamate synthase beta chain and related oxidoreductases # Organism: Corynebacterium glutamicum # 13 471 4 453 457 454 53.0 1e-127 MTPTPSSSRPDRPLRIAIIGAGPAGVYTADILTKEERDFRVSIDLFDRYPAPFGLIRYGV APDHPRIKGIVNALHKVMDRGDIRFLGNVDYGTDLSLADLRRHYDAIVFSTGAVRDAALD VPGVELAGSFGGADFAAWYDGHPDVPRHWPLDATQVAVIGNGNVALDVARILSKHAEDLL PTEIPDNVYRDLAASPVTDVHVFGRRGPAQVKFTPLELRELAHSRDVDIVLYEEDFDFDE ASEQAIEENNQVRTMVGTLTNWLMEQEDRQQSASRRLHLHFLQAPEEFLDEDGDGRVDGL RMRRMELDGSGGVRPSQETVDYPVQAVYRAVGYFGSPVEGVEFDEVRGVIPNAQGRVLDA DGAPVPGLYASGWIKRGPVGLIGHTKGDSLETITHLIEDEPGLWRAQEPSEESVIELLES REVPYTTWAGWHALDEHEKSLGAQATEAGPVARERVKVVDREEMTRISRESVLLGAGG >gi|289557599|gb|ADCD01000053.1| GENE 2 1557 - 2825 835 422 aa, chain - ## HITS:1 COG:MA3033 KEGG:ns NR:ns ## COG: MA3033 COG0007 # Protein_GI_number: 20091851 # Func_class: H Coenzyme transport and metabolism # Function: Uroporphyrinogen-III methylase # Organism: Methanosarcina acetivorans str.C2A # 166 394 6 242 255 215 50.0 1e-55 MTASDLYPTSLRLLGRPVLIVGGGRVAGRRVGALLDAGALVTVVAPKPGEEVERLAAAGL LTLHRRPYRPSDLDGVWFAQTATGDRAVDGAVAADAEARRVWCVDASDAESSAAWTPAVV RSGDVTVAVNAGGDPRRARALKNAITLALSTGRLPLRRRRASAEPGRVALVGGGPGDSGL ITVRGRQLLAEADVVVADRLGPRALLAELDPAVPVIEVGKAPGNHLATQDEINAVLVREA RAGRLVVRLKGGDPYVLGRGGEEAAHCRAHGVDVEVVPGVTSAVSVPAAAGIPVTHRGVA TGFTLVTGHEELSEVPTRADHTLVLLMGVRRLADTARRLTERGLDGATPVAIIERGWMPD QRVTVGTVETIAAQAAAVGVENPAVIVVGDVVRLSPYATGAPAAGIPAPILTLNPTSEGA RA >gi|289557599|gb|ADCD01000053.1| GENE 3 2822 - 3745 657 307 aa, chain - ## HITS:1 COG:CAC0108 KEGG:ns NR:ns ## COG: CAC0108 COG0600 # Protein_GI_number: 15893404 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type nitrate/sulfonate/bicarbonate transport system, permease component # Organism: Clostridium acetobutylicum # 60 301 19 261 265 138 31.0 1e-32 MRTDTPTLDAPGRAPGAAADDELRELDSGLDALQAVDSTRRTGLAGWDWSRVLLPVAAVV LLVAIWQVAAWLAGARGEPITGPGDVLGAFGTLWAQGLVQQAVATSVGRAVVGFALAVVV GVGLGLLLGQVGVLRRAFGPLLTALMVLPNVAWVPLAVLWFGLSDATAYFVMLTGAVPAV VAGLTTGTDQVPPQLRRAARVLGASRLETALLVVLPAALPAFVSGLRQGWAFAWRGLMAA EIIAVGGPMGVGLGTLLHQGRAESDLAVVLCAVLTILAVGVLVELTAFGPVERRMLRRRG LLEGSTR >gi|289557599|gb|ADCD01000053.1| GENE 4 3735 - 4460 244 241 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 3 198 2 213 245 98 33 4e-20 MTVVMEDVGKSFGGPTPVLEDVSVRIEPGEFVCLLGASGCGKSTLLNLIARLEAPTAGVV KTPREGAAFMFQDAALFPWLTARGNIELALRFAGVPAGERRERAGELLRLVHLGDAADLR PHQLSGGMRQRVALARALAQDRPLLLMDEPFAALDAITRDLLHVELERVWRQTGRTVVFV THNVAEAVRLGQRVLLLSSRPGRVVAEWDVPAAARQDPPAAAALTAAITARLGQEIRRHA H >gi|289557599|gb|ADCD01000053.1| GENE 5 4492 - 5832 1074 446 aa, chain - ## HITS:1 COG:Cgl2753 KEGG:ns NR:ns ## COG: Cgl2753 COG2895 # Protein_GI_number: 19554003 # Func_class: P Inorganic ion transport and metabolism # Function: GTPases - Sulfate adenylate transferase subunit 1 # Organism: Corynebacterium glutamicum # 16 440 19 423 433 380 55.0 1e-105 MSTALLDRRAPAGTLFRLATAGSVDDGKSTLVGRLLHDSKAVLADQLEAVARTSAERGFG GAEGGLDLALLTDGLRAEREQGITIDVAYRYFATDRRTFVLADCPGHVQYTRNTVTGAST ADAVVLLVDARKGVVEQTRRHLSVVALLRVPHVIVAVNKIDLVDYSEEVFTAIAEDVRRV ARELGLSDAVSVPVSALQGDNVVTRSARTDWYTGPTLMELLESLPGADAEDDAAASFRFP VQLVVRPQGALAPGLDPEVFRDYRGYAGQVVAGTVRPGDAVAVLTPGQPARTTTVVGVDA AGESLEEASAPQSVVLRLADEVDVARGDTIAAADTAPRPTAEVSAALCWLSAAPLRVGQQ VLVKHGTAVVRALVQEVAGRLDLDTLRLDPAETLGLNDIGQVRLHLAAPLPVEPYAVHRR TGAFLVIDPHDGATLAAGMVRGGDEA >gi|289557599|gb|ADCD01000053.1| GENE 6 5832 - 6767 830 311 aa, chain - ## HITS:1 COG:Cgl2754 KEGG:ns NR:ns ## COG: Cgl2754 COG0175 # Protein_GI_number: 19554004 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes # Organism: Corynebacterium glutamicum # 17 311 11 304 304 405 67.0 1e-113 MTLTHAPDPGTVSPAGPDVQDALEAEAIHIIREVVAEFERPAMLFSGGKDSVVMLHLAAK AFWPGRIPFPVVHVDTGHNFPEVLEFRDRTVERLGLRLVVGSVQEYIDRGELRERADGTR NTLQTTPLLDTIRTNRFDAVFGGGRRDEDKARAKERIISLRDAFGQWDPRNQRPELWNLY NGRHTPGQHVRAFPISNWTELDVWRYIAREGIELPSIYYAHEREVFRRDGMWRAVGEHSR PAEGEEVTTRTVRYRTVGDMSCTGAVLSEAATVEDVVLEVAASTLTERGATRADDRISEA AMEDRKKDGYF >gi|289557599|gb|ADCD01000053.1| GENE 7 6800 - 7525 556 241 aa, chain - ## HITS:1 COG:MT2462 KEGG:ns NR:ns ## COG: MT2462 COG0175 # Protein_GI_number: 15841906 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes # Organism: Mycobacterium tuberculosis CDC1551 # 51 240 63 252 254 221 58.0 1e-57 MSTVPPTRPTEDLERLQALAESGAAELGWDAPAEAVVDWAARHVDLRRAAVACSMADAVL PHLVAQRMPGVDVLFLETGYHFTETLATRDEVARRLDVTVVDVLPELTVADQDERHGKDL FARDPGLCCAMRKVEPLNRALAGYDLWFTGVRRDEAPTRTNTPLVGWDEAHGMVKVNPVA PWSFDDLVGYATDHDVPVNLLLQNGYPSIGCRPCTRPVAPGEDPRAGRWAGTAKTECGIH V >gi|289557599|gb|ADCD01000053.1| GENE 8 7522 - 9237 1387 571 aa, chain - ## HITS:1 COG:Rv2391 KEGG:ns NR:ns ## COG: Rv2391 COG0155 # Protein_GI_number: 15609528 # Func_class: P Inorganic ion transport and metabolism # Function: Sulfite reductase, beta subunit (hemoprotein) # Organism: Mycobacterium tuberculosis H37Rv # 10 571 7 563 563 629 56.0 1e-180 MTQVNETSRPARTPRRPSAKPHGQWKVDGTAPLNHNEEFKQQDDGLNVRERIEQVYAHEG FDSIPSDDLHGRFRWWGLYTQRRQGIDGGKTATLEPHELEDRYFMLRVRIDGGDLTTEQL RVIGGISTDFGRDTADITDRQNVQLHWIRVEDVPEIWRRLESVGLSTTEACGDVPRVILG SPVAGIAADEIIDPTPVIREIADRWIGDLEVSNLPRKFKTAITGHPSQDVVHEINDVSLV GVVHPELGPGYDLWVGGGLSTKARLADRIGAFVSAERAPEVWHAVVSIFRDYGYRRLRNK ARMKYLLEDWGPERFRTVLEEEYLGYALPDGPAPAPPTRPGDHVGVHEQKDGRFYIGAAP VVGRSSGTTLTALADLLEAHGSTRLRTTPHQKIVVLDVERDRVDAVVAGLKELGLDPEPS VFRRSTIACTGLEFCKLAIVDTKDTATAAIAQLEERLADLADRLPERLTLHVNGCPNSCA RIQTADIGLKGQLLPDDDGGQTPGFQVHLGGGLASVDRAEAGLGRSVRGLKVRADGLVDY VERLVRRYDEQREPGETFARWAHRVDEEALR >gi|289557599|gb|ADCD01000053.1| GENE 9 9354 - 10103 512 249 aa, chain - ## HITS:1 COG:MT0272 KEGG:ns NR:ns ## COG: MT0272 COG2138 # Protein_GI_number: 15839641 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Mycobacterium tuberculosis CDC1551 # 6 243 1 232 247 94 36.0 2e-19 MSAPVLHVIACAHGTHDAAGRVVIDGLRADLAALLDAEGPGARVHEAYVDVQSPSLDEVV AALPPGEPAVIVPLLLSLGHHVHHDIHHAAAARPDTIAAAPLAGAGDDVEPRLVTVLAER VAQAVPAGEAATSDIILAAAGTRAADGQAQVHALAGALARATGLPVTAAFGAAATPRVPD AVSRVRAAGRRAVVAAHLLAPGYFHDRLGESGADAVTAPLLPHPLVARIALDRLRSALAE APRGAAGGR >gi|289557599|gb|ADCD01000053.1| GENE 10 10147 - 10893 534 248 aa, chain - ## HITS:1 COG:MT0502 KEGG:ns NR:ns ## COG: MT0502 COG4221 # Protein_GI_number: 15839874 # Func_class: R General function prediction only # Function: Short-chain alcohol dehydrogenase of unknown specificity # Organism: Mycobacterium tuberculosis CDC1551 # 1 244 13 244 251 164 48.0 1e-40 MTGATSGIGRATALELARRGWRVYAVGRRAERLETLAADVRAEGVSGDVVPAALDVTDEA AVAALASRVEADGGADTLVNIAGGALGTDAVGVGDRADWEWMFRVNVLGTLAMCQAFLPM LRAHGEGTVLNLTSTAAVTAYEGGAGYNAAKMGQHGLTGALRLEEAEHNVRVIEVLPGMV HTEEFSRNRLGGDQSAADAVYAGVEKPLTAEDVAEVCVHAVELPHHVNLDQIVMRPVAQA AQHKVIRR >gi|289557599|gb|ADCD01000053.1| GENE 11 10871 - 13753 2676 960 aa, chain + ## HITS:1 COG:RP687 KEGG:ns NR:ns ## COG: RP687 COG0525 # Protein_GI_number: 15604530 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Valyl-tRNA synthetase # Organism: Rickettsia prowazekii # 107 949 14 808 814 590 37.0 1e-168 MPLVAPVTTAARAGFFAGSWVWLTPPTVAEPCRSEHRPDHLPQVDRLKGREVLGLVAGPA RRPGHGRMAGMAENTQGTDTPIDASTPSTPAAGAVAVPDKPALEGLEEKLTARWADERTY AFDTQTTREQVYSIDTPPPTASGSLHVGHVFSYTQTDVLARYQRMNGKNVFYPMGWDDNG LPTERRVQNYYGVRCDPATPYVEGYRPPEKPAKNQRDWDVISRRNFIELCEELAVEDEKV FEDLFTRLGLSVDWDMTYRTIDDVSRAVSQRAFLAGIASGDAYLAEAPTMWDVTFRTAVA QAELEDREVPGAYHRYAFTAADGEQVFIETTRPELLASCSGLVAHPDDERYQHLFGTTVT SPLYGVEVEVFPHPLAKPDKGSGIAMVCTFGDLNDVTWWRELQLPTRTLIGRDGRFAADT PEWITTDAGRQAYADTVAGRTVFSAKQGVVDALTAAGLLDGEPKKIMHAVNFYEKGDKPL EVVTSRQWYIRNGGRDADRRAELIERGREISWHPEHMRHRYENWVEGLNGDWLVSRQRFF GVPIPVWYPLDAEGEPDYENPILPADEQLPVDPAAEAAPGYAEDQRDVPGGFTGDPDVLD TWATSSLTPQIVGRWSRDEAFFNNVFPFDLRPQGHDIIRTWLFSTVVRADALNGSVPWTD TALSGWILDPDRKKMSKSKGNVVVPTDILEEFGSDAVRYWASSARLGADTAYEVAQMKIG RRLAIKLLNAAKFVLNLGATRDAVVRTPEDAARVTNALDASLLARLATTVEQATAAFDAY DYARALNVTESFFWQFTDDYVELIKDRAYGGHGEAEQASVVAALATTLDSLLRLLAPFQP FATEEVWSWWRTGSVHRAPWPGLESEAAGLRAAAEGGDPQVLAVVAQVLGRVRKAKSEAK VKQRTQVRTATVRAAAAQLDALRGGLADLKGAGNVADVTLTEADGELEVTDIELAPAEEA >gi|289557599|gb|ADCD01000053.1| GENE 12 13819 - 14154 170 111 aa, chain + ## HITS:1 COG:no KEGG:Mlut_09920 NR:ns ## KEGG: Mlut_09920 # Name: not_defined # Def: predicted membrane protein # Organism: M.luteus # Pathway: not_defined # 1 110 1 110 111 137 83.0 1e-31 MAAALAGMGVLHFARPKPFDGLIPPALPGPARAWTVGSGVAELAVAGMLAAPRTRRAGGR AAQALFLGVWPGNAWMAWRWRGRSWPWRALALGRLPLQVPMIRAAGRIARG >gi|289557599|gb|ADCD01000053.1| GENE 13 14252 - 14536 233 94 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289705664|ref|ZP_06502049.1| ## NR: gi|289705664|ref|ZP_06502049.1| hypothetical protein HMPREF0569_1537 [Micrococcus luteus SK58] # 1 94 1 94 94 166 100.0 3e-40 MTTTPTAHRPLRARMGAVFAAAMLAVGGTALATPPPAEAVTTVVITNGNFHNCTSRMNSE MKLYRMEGYTVRIAYKCKWFADARRWEGTFYASR >gi|289557599|gb|ADCD01000053.1| GENE 14 14672 - 15286 651 204 aa, chain - ## HITS:1 COG:no KEGG:Mlut_09910 NR:ns ## KEGG: Mlut_09910 # Name: not_defined # Def: DsbA-like thioredoxin # Organism: M.luteus # Pathway: not_defined # 1 204 1 205 205 262 66.0 5e-69 MSENTQPVVDFYFDPTCPFAWITSRWILEVEKVRDIQVKFHQMSLYMLNEGRDLPEDYRR STDRGLIPGRGTQHVGAEHPERLAEWYTALGTRIHNEGQKDYEAALTGAAVDLGLDPAPI LAATETDAEDERLREKQRAAEELVGNDVGTPVVSFNGTAFFGPVLTRIPRGEEAGRIFDG AVALAEYPYFYEIKRARTTDPQFD >gi|289557599|gb|ADCD01000053.1| GENE 15 15336 - 16634 272 432 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 [Bacillus selenitireducens MLS10] # 165 425 248 463 466 109 30 2e-23 MARIGESADLLKCSFCGKSQKQVRKLIAGPGVYICDECIELCNEIIEEELGEAAEADETV LPTPQEIFDHLESFVIGQEAAKRSLAVAVYNHYKRVRGPQARGGDLADRLTERDDLADVE VGKSNILMVGPTGSGKTYLAQTLARRLNVPFAVADATSLTEAGYVGEDVENILLKLIQAA DYDVKKAEQGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRK HPHQEFLQIDTSNVLFIVAGAFAGLDEIIGSRAGRKGIGFGAPLNHLGAGDVTYADVRPE DLLKFGLIPEFIGRLPVITTVEDLTHEQLVRVLTEPKNALLKQYQKMFLMDGVELEFEQD ALDAVVAQAEARGTGARGLRSIMENVLKPVMFELPSRSDVGTVVISGEAVRGEAEPVLIP AEVERRRRGRSA >gi|289557599|gb|ADCD01000053.1| GENE 16 16807 - 17439 735 210 aa, chain - ## HITS:1 COG:Cgl2359 KEGG:ns NR:ns ## COG: Cgl2359 COG0740 # Protein_GI_number: 19553609 # Func_class: O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Protease subunit of ATP-dependent Clp proteases # Organism: Corynebacterium glutamicum # 7 207 8 208 208 253 69.0 2e-67 MPSLPTPDARYILPQFEERTPYGFKRQDPYAKLFEDRIVFLGAQVDDASADDVMAQLLVL EAMDSERDITLYINSPGGSFTAMTAIYDTMQFIRPEVQTVCLGQAASAAAVLLAAGAPGK RLALPNARVLIHQPAMQGDRGTATDLEIHAQEINRMRVWMEETLASLTNRTPEEVSQDID RDKFLSAEQALEYGLVDEVLASRKITRPSA >gi|289557599|gb|ADCD01000053.1| GENE 17 17514 - 18128 662 204 aa, chain - ## HITS:1 COG:Cgl2360 KEGG:ns NR:ns ## COG: Cgl2360 COG0740 # Protein_GI_number: 19553610 # Func_class: O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Protease subunit of ATP-dependent Clp proteases # Organism: Corynebacterium glutamicum # 20 189 18 187 197 220 62.0 2e-57 MTDITPSMRSVDPAQREDFLYTQLLKSRIVWLGEDVRDDNANAICSQLLLLSAEDPEKDI YLYINSPGGSVTAGMAIYDTMQYIPNDVVTVATGLAASMGQFLLASGAKGKRYATPHARV LMHQPSGGIGGTESDIRIQAQLILHMKQVMAELTAEQTGQSVETILEDNARDKWFTAQEA LEYGFIDHIADRAASVTGGGGVRG >gi|289557599|gb|ADCD01000053.1| GENE 18 18396 - 19760 1115 454 aa, chain - ## HITS:1 COG:ML1481 KEGG:ns NR:ns ## COG: ML1481 COG0544 # Protein_GI_number: 15827779 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) # Organism: Mycobacterium leprae # 2 452 1 469 469 293 40.0 5e-79 MVKSTAENLSPTRVKLTVEVPFEEVKPALDKAFKDIANQVQIPGFRQGKIPARLIEQRFG REIVVDQAVNEGLNTWFSAAIAEAELTPISRPEVDVTATPDAENAEGPVVFTAEFDVRPT IELPDYKGLKVTVEPAQATEEDEQKALDALRSRFGSLKDVDRPAAQDDFVTMNLTATVDG EQVDQAEGLSYQVGAGTMLEGIDEALDGLSAGEDATFETTLNGGEHDGETAVVKLELTAV KERELPEADDEFAQLASEFDTIAELKEDLKKQAAEEAVSRQGVEARDKVLEELAKLVEVP VPDGVIAEQVEQHFSAGGHTAGDDHDTAEHRAELEQNTREAFANEVILDEVAEAEEVTVD QGELIEYIIATSSEYGMDPNQFAMMLDQGGQIPMIMGEVRRRKALAKVLEYAEVTDTDGK AVDLTAFVTPGGQEALDAEAEATEADDAEAAEQA >gi|289557599|gb|ADCD01000053.1| GENE 19 19960 - 20853 211 297 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163797523|ref|ZP_02191474.1| 50S ribosomal protein L9 [alpha proteobacterium BAL199] # 27 267 5 245 259 85 30 3e-16 MMHGFRPALRRTAAALAGRRPLSLRGSTVLVTGGASGIGRLIALGAARRGADRVVVWDLD LQGAEAVAAEIRSQGADARAERVDVTDAAAVEAAAARAGKVDVAVNNAGVVTGARLEDAT EEGIRRTFEVNALAPYWLTRAVLPGMRARDRGAVVTVASAAGLVGVARQTDYSATKHAAV GFAESLAAELRKDGSRVTSLAVCPFYIDTGMFAGVRSRVPWLLPVLDPHHVAQEVLDAVE AGRTRLLLPRAVGLIAPLRALPAPVFDRAMDVLGVNATMDGFTGRRSRLFAGRETAR >gi|289557599|gb|ADCD01000053.1| GENE 20 21036 - 22712 722 558 aa, chain + ## HITS:1 COG:no KEGG:RMDY18_08600 NR:ns ## KEGG: RMDY18_08600 # Name: not_defined # Def: signal transduction histidine kinase # Organism: R.mucilaginosa # Pathway: not_defined # 353 492 1 140 226 84 50.0 8e-15 MARLMAFSGASLSAPVPSPLCPVGPATGPSALTGEAPVELPGRHLLHHDRLAPAHEAGEA LPLVHVVRVLGPGRFGRDPRPVLRPRGDDPAQPHALPHERGVVRPEECQVRCGDLPSRPP RVDAGAEQRLGPEDVADPADGRLVHQHDADRPPCPPGGGIERRGIVVVERIRAETGDDLG SLGRGECAAPARADQVGPAVLGAQSQPDRGGRRRGLDPAVGVAGGLGGRGAVVVDLALAD PAGCADRGRGHEVLVPAEGPRPVHAQVDVEHAAAGDVGEEVLAVGPGALEDLAVEQGGPL GEAALRTRGADPAAAEDVGELARETVDGVALRHSHQHLSGGLVVRDLPDAAHVTLVPGER LGQERLDQLGGLLERVLPAADGHDVRVVVLAGQPRRVQVPGQGGADAGHLVGGDLLAVAG AAQHDAQRVQPLLAVGDDGAGGVDAEARVVVLRVVLGGSVVHHLVTGGGEVLHQVGGQLH AGVVGGDVDAHAQTPPEGRRSGGVSLLTAPPDPLPRGGPAQISATDRSGSRTGMGSGSPL AEERKPSPVKWPLRARKS >gi|289557599|gb|ADCD01000053.1| GENE 21 22595 - 24163 1126 522 aa, chain - ## HITS:1 COG:PA1538 KEGG:ns NR:ns ## COG: PA1538 COG2072 # Protein_GI_number: 15596735 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted flavoprotein involved in K+ transport # Organism: Pseudomonas aeruginosa # 22 499 27 504 527 380 41.0 1e-105 MTTTTTTTTTDVRPAPRDESAEILIIGSGFAGLGMGAQLRRHGREDFLILDRAQQVGGTW RDNTYPGAACDVPSHLYSFSFAPNPQWSGFYTPGPEIQDYLVRFSEDEGLTPHLRLGADM LEAHWDPETERWMVRTPRGTYTGRWLIMGTGHLADPRLPDVPGLDAFEGEVIHSARWDHT VDLKGKRVAVVGTGASAIQVIPELATTAAELVVFQRTPAWVTPRVVKPYSAAVRRMFERA PHTMQRERDDIFWFAESSYAQRRGVPAALDQVRAQALGHLAAAVSDPELRERLTPRYLPG CKRVLVSNDYYPAMARDNVTLEDSALDRVEGSRLFGVSGHGYEVDVVVLCTGFEAAQPPF ADRVHDGEGRSLADHWSSGMAAFDSTAVAGFPNLFAINGPNTSLGHNSIVYIIESQIAYI LEALDRAEHEGIRTMVPETLAQEEYVDRLQERAATSVWLVDGGCHSWYVDPRSGKLTLIW PDYAYDFRARNGHFTGEGFLSSASGEPEPMPVREPERSVALI >gi|289557599|gb|ADCD01000053.1| GENE 22 24178 - 25032 648 284 aa, chain - ## HITS:1 COG:no KEGG:cgR_2327 NR:ns ## KEGG: cgR_2327 # Name: not_defined # Def: hypothetical protein # Organism: C.glutamicum_R # Pathway: not_defined # 8 280 8 280 284 205 41.0 2e-51 MPLTASTVTRTVSVDGASVTCHDSVTPGELDRPLVLVHGTGGTTASHFGHLFPMMATRTR VIAVDWAPTADPAADLTVDLLVGQVRAAVDELLGPDAAFDLLGYSLGAVVAGQLAADLGR RVENLVLVAGWATTDVHQRLRNEVWRHLYATSPDALARYTAFCGLSPLALRSLTPAMLDG ALASLTADEFTARQMDLNARVDVADRLSAVTARTLIVSCAEDVMVPPHHQYELLGIIDDA RLTTMTSGHAFFLERPAELMQIVDLHLREPDRHPAGAIIPETHA >gi|289557599|gb|ADCD01000053.1| GENE 23 25257 - 25985 400 242 aa, chain + ## HITS:1 COG:no KEGG:cgR_2325 NR:ns ## KEGG: cgR_2325 # Name: not_defined # Def: hypothetical protein # Organism: C.glutamicum_R # Pathway: not_defined # 8 240 28 259 260 103 35.0 6e-21 MRLLHEVGPAGLRLSQLVQRTGLPQPTAHRLLADLAEEGAVTRRGAAYALGDRWGPVGFE PVTPRCLIEREASRAVVQAAADELGDTVYLAARAAGGVAYLLRCDGDSPVRVFTVEVGEV KRLAAGYAGIALLASLPPERRRAEVDAVVARPPRRWNLTDDGALHDLLDTLLRQMDEQGW CGGVPVVPGVAGVACGVPARTGSIPQVSLTASAAEQRMPPGRVPEVAEVLRAAATRLAEI GG >gi|289557599|gb|ADCD01000053.1| GENE 24 26142 - 28763 2209 873 aa, chain + ## HITS:1 COG:MT2542 KEGG:ns NR:ns ## COG: MT2542 COG0308 # Protein_GI_number: 15841991 # Func_class: E Amino acid transport and metabolism # Function: Aminopeptidase N # Organism: Mycobacterium tuberculosis CDC1551 # 2 859 5 855 861 676 48.0 0 MNITREEAAARAAALTVDAYEVSLDLTRGAEHFRTATTVTFAAAEDAVGTHTWIDYVAGQ APAVTLNGEALDVADFDGARLRIGPLAAQNTLVVDGLGDYSNTGEGLHRFVDPVDQEVYL YTQFEVPDSRRMFAVFEQPDLKAAFRFTVTAPAHWAVVSNQPEASRRTLGVVANEDNPQG VDTAVWEFTPTPRISSYITALVAGPYASVHSELTSADGRTIPLGVYCRASLVEHLDAENV FELTRQGFEFFEAQYGHAYPFEKYDQLFVPEFNAGAMENAGCVTFLESYVFRGTVPQALI ERRAITILHELAHMWFGDLVTMRWWNDLWLNESFAEFMSTLAAAENTQYTGAWTTFSAME KNWAYRQDQLSSTHPIKARIRDLDDVLVNFDGITYAKGASVLRQLVAWVGQENFMAGVRA YIAQHAWGNTELPDLMSELEAASGRDLSEWTRVWLETSGVNTLRTEVETDEAGTITALRL RQSAPDGSPSAPGDDVLRPHRLAVGFYDVDEATGRLTRTERFELDVAGEVTEVAEAVGRR RPAVILPNDDDLAYAKLRLDDASWEAASTRLKDVDGSLARTLLWGAAWDTVRDGEASAAW FVDLVLANVGHERDSSVVQTLLRQLATAIGLYLPEDQAEAVRVAAADRLWGLVAEAEDGS DNQLQFVKAFALHARTTAQLDRLAALVDGTRTVPGLDLTTDLRWELLTALVAAGRAGEAE IAEAERADATATGALAAIQARAAVPTAEAKRAAWDRVMAGELSNTEQRQALIGFARVHDA ALIAPFADSYFEGVEAMWDSRSHEMAETAATLGYPTAQVTPEIADRATALSERLADTRAG LSRVLAEGRDETVRALAAREHATAHVHQVHAGA >gi|289557599|gb|ADCD01000053.1| GENE 25 28855 - 29335 422 160 aa, chain + ## HITS:1 COG:AGc1844 KEGG:ns NR:ns ## COG: AGc1844 COG1764 # Protein_GI_number: 15888346 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted redox protein, regulator of disulfide bond formation # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 2 148 25 170 176 137 42.0 1e-32 MKHTFSLRTEWTGDRGSGTSGVRDYDRSVVIQDAAVGEIQASAARPFRGDDSKWNPETLL LGALAECHVLSYLHVAATSGVVVTGMTCGVEGELEVDGDGAGRFTAITLRPEVTLQDEAD RERAEALHAEAHRLCFIANSLSAPVAVEPVRPEALPTGAP Prediction of potential genes in microbial genomes Time: Thu May 26 07:26:34 2011 Seq name: gi|289557518|gb|ADCD01000054.1| Micrococcus luteus SK58 ctg1119142780294, whole genome shotgun sequence Length of sequence - 79595 bp Number of predicted genes - 74, with homology - 66 Number of transcription units - 48, operones - 16 average op.length - 2.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 2 - 298 276 ## Mlut_01410 hypothetical protein 2 1 Op 2 . + CDS 295 - 762 459 ## Mlut_01420 protein of unknown function (DUF1469) 3 1 Op 3 . + CDS 759 - 1457 564 ## Mlut_01430 hypothetical protein 4 2 Op 1 . + CDS 1700 - 2587 766 ## COG0414 Panthothenate synthetase 5 2 Op 2 . + CDS 2584 - 3282 389 ## COG2094 3-methyladenine DNA glycosylase 6 2 Op 3 . + CDS 3330 - 3812 586 ## Mlut_01460 hypothetical protein 7 3 Tu 1 . + CDS 3964 - 6027 1751 ## COG3590 Predicted metalloendopeptidase - Term 5933 - 5968 1.1 8 4 Tu 1 . - CDS 6068 - 6463 367 ## Mlut_01480 transcriptional regulator 9 5 Tu 1 . - CDS 6570 - 8483 1616 ## COG0477 Permeases of the major facilitator superfamily 10 6 Op 1 . + CDS 8634 - 9602 844 ## COG1052 Lactate dehydrogenase and related dehydrogenases 11 6 Op 2 . + CDS 9635 - 11149 1376 ## COG1190 Lysyl-tRNA synthetase (class II) 12 7 Op 1 . - CDS 11133 - 11630 249 ## 13 7 Op 2 . - CDS 11549 - 12574 334 ## 14 8 Tu 1 . + CDS 12014 - 14569 2501 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 15 9 Op 1 . + CDS 14895 - 15077 191 ## Mlut_01550 hypothetical protein 16 9 Op 2 . + CDS 15174 - 15689 507 ## COG1246 N-acetylglutamate synthase and related acetyltransferases 17 10 Tu 1 . - CDS 15727 - 16659 584 ## COG1194 A/G-specific DNA glycosylase 18 11 Tu 1 . + CDS 16701 - 17546 313 ## Mlut_01580 hypothetical protein 19 12 Op 1 . - CDS 17560 - 18996 1138 ## COG1066 Predicted ATP-dependent serine protease 20 12 Op 2 . - CDS 19086 - 20255 1058 ## COG4129 Predicted membrane protein 21 13 Op 1 39/0.000 + CDS 20482 - 21600 970 ## COG0226 ABC-type phosphate transport system, periplasmic component 22 13 Op 2 38/0.000 + CDS 21736 - 22695 611 ## COG0573 ABC-type phosphate transport system, permease component 23 13 Op 3 41/0.000 + CDS 22793 - 23878 991 ## COG0581 ABC-type phosphate transport system, permease component 24 13 Op 4 . + CDS 23964 - 24743 196 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 25 14 Tu 1 . - CDS 24836 - 25807 788 ## COG0306 Phosphate/sulphate permeases 26 15 Tu 1 . + CDS 25016 - 26704 664 ## 27 16 Tu 1 . - CDS 26643 - 27317 545 ## Mlut_01670 hypothetical protein - Prom 27495 - 27554 80.3 + TRNA 27476 - 27551 84.3 # Lys TTT 0 0 + Prom 27478 - 27537 78.1 28 17 Op 1 . + CDS 27610 - 28335 563 ## Mlut_01690 predicted esterase 29 17 Op 2 . + CDS 28369 - 29256 894 ## Mlut_01700 hypothetical protein - Term 29224 - 29269 6.1 30 18 Tu 1 . - CDS 29385 - 30587 997 ## COG2733 Predicted membrane protein 31 19 Tu 1 . + CDS 30420 - 30728 64 ## 32 20 Tu 1 . + CDS 30829 - 31686 656 ## COG0584 Glycerophosphoryl diester phosphodiesterase 33 21 Op 1 38/0.000 + CDS 31842 - 33524 1660 ## COG0747 ABC-type dipeptide transport system, periplasmic component 34 21 Op 2 49/0.000 + CDS 33661 - 34665 268 ## PROTEIN SUPPORTED gi|167855436|ref|ZP_02478201.1| 30S ribosomal protein S21 35 21 Op 3 13/0.000 + CDS 34662 - 35654 900 ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 36 21 Op 4 . + CDS 35657 - 37411 654 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 37 21 Op 5 . + CDS 37505 - 38845 1282 ## COG1914 Mn2+ and Fe2+ transporters of the NRAMP family 38 21 Op 6 . + CDS 38877 - 39254 318 ## COG0011 Uncharacterized conserved protein 39 21 Op 7 . + CDS 39347 - 39910 284 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 40 22 Tu 1 . - CDS 39793 - 41775 640 ## 41 23 Tu 1 . + CDS 40897 - 41871 858 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins 42 24 Tu 1 . - CDS 41879 - 42232 355 ## COG3824 Uncharacterized protein conserved in bacteria - Prom 42415 - 42474 75.2 + TRNA 42400 - 42472 56.0 # Glu TTC 0 0 + TRNA 42579 - 42652 87.5 # Asp GTC 0 0 + TRNA 42725 - 42800 78.7 # Phe GAA 0 0 - Term 42565 - 42632 31.1 43 25 Tu 1 . - CDS 42880 - 43146 259 ## Mlut_01890 hypothetical protein 44 26 Tu 1 . + CDS 43349 - 45208 1647 ## COG1292 Choline-glycine betaine transporter - Term 45235 - 45276 14.1 45 27 Tu 1 . - CDS 45290 - 46798 1251 ## COG1113 Gamma-aminobutyrate permease and related permeases 46 28 Tu 1 . + CDS 47054 - 50806 2012 ## 47 29 Op 1 . - CDS 50689 - 51597 845 ## COG0171 NAD synthase 48 29 Op 2 . - CDS 51656 - 52102 476 ## Mlut_01970 hypothetical protein 49 30 Tu 1 . + CDS 52170 - 52757 579 ## COG0461 Orotate phosphoribosyltransferase 50 31 Tu 1 . - CDS 52786 - 53958 993 ## COG0598 Mg2+ and Co2+ transporters 51 32 Op 1 . + CDS 53533 - 54309 356 ## Mlut_02020 hypothetical protein 52 32 Op 2 . + CDS 54228 - 54998 328 ## COG0566 rRNA methylases 53 33 Op 1 . - CDS 55130 - 56026 782 ## COG3386 Gluconolactonase 54 33 Op 2 . - CDS 56078 - 57433 1012 ## Mlut_02050 secretory lipase 55 34 Tu 1 . + CDS 57629 - 58651 1047 ## COG0191 Fructose/tagatose bisphosphate aldolase 56 35 Tu 1 . - CDS 58711 - 60177 1154 ## Mlut_02070 predicted transcriptional regulator 57 36 Tu 1 . - CDS 60415 - 63516 1463 ## 58 37 Tu 1 . - CDS 63618 - 64832 774 ## Mlut_02100 hypothetical protein 59 38 Op 1 . + CDS 64284 - 65450 704 ## Mlut_02110 hypothetical protein 60 38 Op 2 . + CDS 65489 - 66100 606 ## COG1435 Thymidine kinase + Term 66214 - 66256 14.8 61 39 Tu 1 . - CDS 66278 - 67687 1189 ## COG2031 Short chain fatty acids transporter 62 40 Tu 1 . - CDS 68008 - 69399 598 ## 63 41 Tu 1 . + CDS 68476 - 68964 282 ## PROTEIN SUPPORTED gi|227378445|ref|ZP_03861905.1| acetyltransferase, ribosomal protein N-acetylase 64 42 Op 1 23/0.000 + CDS 69462 - 69926 61 ## COG2963 Transposase and inactivated derivatives 65 42 Op 2 . + CDS 69757 - 70710 522 ## COG2801 Transposase and inactivated derivatives 66 43 Tu 1 . - CDS 70979 - 72205 762 ## COG2508 Regulator of polyketide synthase expression 67 44 Op 1 . + CDS 72349 - 73971 1269 ## COG2072 Predicted flavoprotein involved in K+ transport 68 44 Op 2 . + CDS 73968 - 74969 819 ## COG2267 Lysophospholipase 69 45 Tu 1 . + CDS 75109 - 75750 394 ## Mlut_15970 formate/nitrite transporter family protein 70 46 Op 1 . + CDS 75975 - 76247 224 ## Mlut_20920 transposase 71 46 Op 2 11/0.000 + CDS 76286 - 76891 216 ## COG2801 Transposase and inactivated derivatives 72 46 Op 3 . + CDS 76914 - 77201 112 ## COG2801 Transposase and inactivated derivatives 73 47 Tu 1 . - CDS 77246 - 77860 132 ## DR_1956 hypothetical protein 74 48 Tu 1 . + CDS 78166 - 79347 1008 ## COG0502 Biotin synthase and related enzymes Predicted protein(s) >gi|289557518|gb|ADCD01000054.1| GENE 1 2 - 298 276 98 aa, chain + ## HITS:1 COG:no KEGG:Mlut_01410 NR:ns ## KEGG: Mlut_01410 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 98 174 271 271 137 96.0 2e-31 TRGIRDAAQPDSAASTAPRRHETRPEAVHADVTPHHLDSQAPAYSSDSLSQADGRVADGA GPRRAAGVGDIPYGTQAPVQQGLTAERPFDQTRPGGDA >gi|289557518|gb|ADCD01000054.1| GENE 2 295 - 762 459 155 aa, chain + ## HITS:1 COG:no KEGG:Mlut_01420 NR:ns ## KEGG: Mlut_01420 # Name: not_defined # Def: protein of unknown function (DUF1469) # Organism: M.luteus # Pathway: not_defined # 1 155 1 155 155 259 97.0 2e-68 MSTAHEPFRDATPRSGAHTPPPTQAEFRAEHESLGEMFQSLSAKLSTLVSQEIALAKAEA TESAKKAGKGAGLLAGAAVGGFFLLMFLSLALMHLLDVFLPIGWAALIVAVLWGVVAAVL AVQGKKDIEKIKGLPQTQETLQEIPETLNPAKETR >gi|289557518|gb|ADCD01000054.1| GENE 3 759 - 1457 564 232 aa, chain + ## HITS:1 COG:no KEGG:Mlut_01430 NR:ns ## KEGG: Mlut_01430 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 232 1 232 232 321 96.0 1e-86 MTTSNNPDEIRADIERTRRELGQDVDALAEKVSPTKAVSRQTNRIKDGFIHAKENIMGSP EQHRHEPSLGDRAHGMVDDARASAYGAAGQAQDRLGDAGDRVSEWADDAQHALHQAPAQL RGRTAGNPLAAGVIAFGAGLLLSSLIPASRVEQRAAEGLKDQAAPLVDEAKQAVQQLRED LEPAAREAAGSVKESATEAASHLKDQGTDTAQDLKAQSQDAARQVKDTAKDA >gi|289557518|gb|ADCD01000054.1| GENE 4 1700 - 2587 766 295 aa, chain + ## HITS:1 COG:Cgl0114 KEGG:ns NR:ns ## COG: Cgl0114 COG0414 # Protein_GI_number: 19551364 # Func_class: H Coenzyme transport and metabolism # Function: Panthothenate synthetase # Organism: Corynebacterium glutamicum # 22 288 19 279 279 251 58.0 1e-66 MRSALRELVAHATDDGGPEPVTVGLVPTMGALHGGHAALVRRARAENDVVAVSIFVNPLQ FGDPADLEHYPRTLEADLDLLTAAGADVVFAPDVQEMYPGYPDAPIVTVSAGRMGEVLEG ASRPGHFDGVATVVAKLWNIVRPAVPALRSYFGQKDAQQLTVLRRLAMDLDIDVDVRAVP IVRSPEGLALSSRNTRLDAAGLEHALVLSRALRSLADAAAAGEPVDVQAARRMVEDEPGV ELDHLVVVDRDTFAELGPELLCQPLRREALALVAAHVPPVRLIDTMVLPVAGPLP >gi|289557518|gb|ADCD01000054.1| GENE 5 2584 - 3282 389 232 aa, chain + ## HITS:1 COG:AGl2973 KEGG:ns NR:ns ## COG: AGl2973 COG2094 # Protein_GI_number: 15891599 # Func_class: L Replication, recombination and repair # Function: 3-methyladenine DNA glycosylase # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 2 232 14 199 201 95 37.0 7e-20 MTPERLAAAFDGPSPALAATLLGCRLTVVAPDGAVTVRLTETEAYGNAGADPGAHSFRGR TERNAALFGPPRRTYVYLNYGIHRCLNLVGHPEGEAGGVLLRAAEVLAGGDLAVARRGRD TGPRLLSGPGNLGQGLGITLEMGHAPVEIVTAPPEVADDGGTPARLAAPAAPARFLLAPP APREPAEPPIEVVTGPRVGVSGEGGSVRFPWRFSVAGHRSVSAFRRGRNVPD >gi|289557518|gb|ADCD01000054.1| GENE 6 3330 - 3812 586 160 aa, chain + ## HITS:1 COG:no KEGG:Mlut_01460 NR:ns ## KEGG: Mlut_01460 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 160 1 160 160 300 98.0 2e-80 MTEMNKTAHGETQQTVTRTIDASAKDVFDFLTLPANHAKFDGSGMVQSDDKTQRIQKVGD VFTMNMHAEHMGGDYQTDNHVVAYDPNKLVGWKTAPAGTEPKGWQWIYRLEDNGSGSTVV SLTYDWTAVTDPELLEKNLFPMVSEEQMEESLAKLAAEVG >gi|289557518|gb|ADCD01000054.1| GENE 7 3964 - 6027 1751 687 aa, chain + ## HITS:1 COG:ML2613 KEGG:ns NR:ns ## COG: ML2613 COG3590 # Protein_GI_number: 15828409 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted metalloendopeptidase # Organism: Mycobacterium leprae # 12 687 21 666 667 542 44.0 1e-154 MTATAEPEVPSPREDLYRHVNAGWLDTHEIPADQGAYGAFLELRDAAELAVRHLCEDAVR EVGTGFDPAQARVQATAAAGAHRDAPLAPLDEEDAEGTEHPELKRRIAALYASFMDDETV EARGLEPIASDLAAVASVSTPAELLALSGRLQRQGVSGLINTGALNDAGNPDRMLLHLLQ GGLGLPDESYYRDETYAEILQQYTEHTGRLLALAGIGADRAEAAALGTRVVELEKRIAAL HWDVVRTRDAVARYNLMTHDRLTELFPLADAWLEGVDAAGERAAEVVVWQPDFLSGVQEL LDGPEAADLEDWRHWLILQVLRSFAGFLPDAFVQENFSFYGRRLAGTEEVRPRWKRAVAF VNGAAGEDVAQLYVARHFPQGHVAAMDELVGLLQEAYRRSIEELEWMGEETRQRALEKLA MFRPMVGYPSKWLDYSALEVHAGDLLGNARSSSELEWERDLRKIADGPDPEEWHMTPQTV NAYYSPLENAIVFPAAILQPPFFDPESSMAANMGAIGAVIGHEIGHGFDDQGSRYDGAGR LEDWWTEEDRAAFTERTSRLVAQYNALSPAEAPDHRVNGEFTLGENIGDLGGLGIAHRAL EIWRDEGDGASLDAAAGDREFFTAWATVWRQLTRPEAMVTRIASDPHSPNEFRCNQVVKN IDAFHEAFGTREGDPMWLAPEERVTIW >gi|289557518|gb|ADCD01000054.1| GENE 8 6068 - 6463 367 131 aa, chain - ## HITS:1 COG:no KEGG:Mlut_01480 NR:ns ## KEGG: Mlut_01480 # Name: not_defined # Def: transcriptional regulator # Organism: M.luteus # Pathway: not_defined # 1 131 39 169 169 186 93.0 3e-46 MARYAAALSPDLSVGAMKAFMMLANGGTMTPSAVAEGLLVDRAQVSRMVRDLEAAGLITR EPDPRDRRSALLSATPEGLARLDAVRGGPAGRGLRRDLARWDSEDIRTLTRLLDRLAAER QTRMQDPAESE >gi|289557518|gb|ADCD01000054.1| GENE 9 6570 - 8483 1616 637 aa, chain - ## HITS:1 COG:Cgl0376 KEGG:ns NR:ns ## COG: Cgl0376 COG0477 # Protein_GI_number: 19551626 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Corynebacterium glutamicum # 62 535 64 539 549 326 38.0 9e-89 MSITASPLPPKDPMTPTSPAPEAVAPAGAPSLERAADDAARHRSVLQALTGLLLGMFVSM IANTVVSTSMPVIIHDIGGDQTAYTWVITSALLATAIATPIWGKLADLVNRKVLFQLALV LFVAASAAAGFTHDPTFLIICRTVQGLGGGGLAALSQVIMADIISPRERGRYMGLFGAVM AVATVGGPLAGGVITDLWGWRWNFFVAVPFAVVALVMVQRTLHLPHRERQKVSIDYLGIV FLAAATALLLIWVTSAGRDFDWASTTTAWMLGGVAVATVLFVVTELRVAEPLIPLTLFRD RTFTLATIASIATGLAMFGSSVYLAQYMQLARGATPTQAGLMTIPMIVGLLVSSTVIGGV ITRTGVWKRWLVIGAVLLIAGTGLLGTLHYDTSFWLVSLYMFLLGAGVGMTMQNLVLVVQ NTTDPRQMGVASSGVTFFRTLGGSIGVAVMGAVVSNVVPDRIEERRADLAAALRSLGPDA AEWSESLKSSTLPRVAEMPDGLRSIFEDVYATGISQAFLVGVPLAIVALAAILFLPNIPL GRMTASERLHATRADLATHSTAEAMQTLPATGPIPVVTAAQGRHPAEDPEEPRAVAAERP ATASPVAGRPVVPAALAVAGTALLAVVVTALVRARRG >gi|289557518|gb|ADCD01000054.1| GENE 10 8634 - 9602 844 322 aa, chain + ## HITS:1 COG:APE1831 KEGG:ns NR:ns ## COG: APE1831 COG1052 # Protein_GI_number: 14601656 # Func_class: C Energy production and conversion; H Coenzyme transport and metabolism; R General function prediction only # Function: Lactate dehydrogenase and related dehydrogenases # Organism: Aeropyrum pernix # 40 320 60 339 347 212 45.0 1e-54 MTRLPEPGLGMLRAAGEVVDGADVGGDAALARLVASGDYDVVVSALDQKFTADVLADARI RGIANYAVGYNNVDVAAATRRGIAVGNTPDVLTDATADIAMLLILGVTRRAHEGERTVRE GRFHGWAPDLLVGRDVHGATLGLAGFGRIGKAVAERALAFGMDVVFAPRPPAHREVAAEE LGDLAGRVRQVRWEELVEAADVLSLHVPLTDDTHHLVDADVIAKMKDDAVLVNTARGPVV DEAALVTALREGRLFGAGLDVYEDEPALAPGLAELENVMLLPHLGSATRDTRAAMAELAA RNAIAMATGAEVPALVNPEVRG >gi|289557518|gb|ADCD01000054.1| GENE 11 9635 - 11149 1376 504 aa, chain + ## HITS:1 COG:Cgl2631 KEGG:ns NR:ns ## COG: Cgl2631 COG1190 # Protein_GI_number: 19553881 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Lysyl-tRNA synthetase (class II) # Organism: Corynebacterium glutamicum # 1 503 1 524 526 469 51.0 1e-132 MTTQNSASAAVDHHDQQAVRAAKREQLLASGREAYPVQVPRTHALAEVRERFDGHEPDWT SGETVSVTGRVVFLRNTGKLCFATLQESGADGEAVRLQVMVSLAAVGEESLAEWKKVVDL GDFLSVTGEVIVSRRGELSIMASAWEMASKALRPLPVLHADLNEETRVRQRYADLIVREE ARRMVYTRAKVTSAVRRTLEGHGYVEVETPMLQLVHGGALARPFETHLNAFDQPMTLRIA TELYLKRAVVGGIDRVFEIGRVFRNEGVDSTHSPEFTTLESYEAWADMHVMAERMQEIIL NAADAVGAGRRLETAKGVIDLDGEWAWVAVYPGLSEAVGREITPDTDAEMLRAIAAEHEV KVDPAWDAEKLVIELFGEIVEPTLMNPTFVYDYPPAAQPLARPHRSDDRVIEAWDLIIGG MERGTAFSELIDPVIQRERLTAQSAMAAAGDDEAMQLDEDFLRALEYGAPPMGGIGLGID RLVMLFTDAGIRETILFPLLKPEA >gi|289557518|gb|ADCD01000054.1| GENE 12 11133 - 11630 249 165 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRSSRSHLQANRQDHPRGPLLPSVPTVIPTFFSRARVPGFRSSLSGFFPACSRFRPCTCG DSRIPQQSRAEGFFNAGGGISAGAVLRIGLRPSLGSASGRPLTGLGLLAGRPRVRAREPA GLTLALTRVRTQQGAHYQPEDEPEADRGGEDGEVVPEVGHVRPPA >gi|289557518|gb|ADCD01000054.1| GENE 13 11549 - 12574 334 341 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRGRGEVASELVQHHGAGVLAGLRTLAHPGARGLLAALGAALVAGEQLDDRLTDAVQVRA ELHEDLGGHALALADQAEQDVLGADVVVAELQRLAQGQLEHLLGARREGDVAGRVLLALA DVLLDLLSHGAQGDVHGLQCLGCDALTLVDQSEQDVLGADVAVVEHARLFLGEHDHPTGA VGESLEHGHTPCVRSWSRLRTRTACRAAVRQREKPPGRRREGPERGPGTPIPRRTRAGRS LALRVAVGLHHVAVQTAAARDLVAVLGRPLADLGGLDLGRRRRHGAALLHVGLQELTEFR GVLLRQVDLVIATVQCEVHGLICRRTVKIIHEDHFYLLCQR >gi|289557518|gb|ADCD01000054.1| GENE 14 12014 - 14569 2501 851 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens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gi|289557518|gb|ADCD01000054.1| GENE 15 14895 - 15077 191 60 aa, chain + ## HITS:1 COG:no KEGG:Mlut_01550 NR:ns ## KEGG: Mlut_01550 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 60 1 60 60 71 98.0 1e-11 MGIGDLNNLANQHSDKINEAVDNAQEQHGDKLGEHGDTVNKGVDGAQEKFLSGDEGEQQA >gi|289557518|gb|ADCD01000054.1| GENE 16 15174 - 15689 507 171 aa, chain + ## HITS:1 COG:Rv2747 KEGG:ns NR:ns ## COG: Rv2747 COG1246 # Protein_GI_number: 15609884 # Func_class: E Amino acid transport and metabolism # Function: N-acetylglutamate synthase and related acetyltransferases # Organism: Mycobacterium tuberculosis H37Rv # 2 168 5 171 174 159 52.0 2e-39 MPADRPLTLRSARTQDVPVIQALVEPLARERVLLQKEAVAYYEAIQEFVVAEEADGTLAG FGALHVMWQDIAEVRTLAVSEAHRGTGVGHLIIEELLDRARAVGVERVFCLTFEVEFFRR HGFEVMADQSAVDPEVYAELLRSTDEGVAEFLDLARVKPNTLGNTRMIRRL >gi|289557518|gb|ADCD01000054.1| GENE 17 15727 - 16659 584 310 aa, chain - ## HITS:1 COG:Cgl2617 KEGG:ns NR:ns ## COG: Cgl2617 COG1194 # Protein_GI_number: 19553867 # Func_class: L Replication, recombination and repair # Function: A/G-specific DNA glycosylase # Organism: Corynebacterium glutamicum # 20 309 9 292 293 245 49.0 9e-65 MPVPAPLVPPTVDVPRLHDAVLGWFAVHARDLPWRSPDCSPWGVLVSEIMLQQTPVVRVL PRWREWLERWPTPADLAAAPTADVLTAWDRLGYPRRALRLQEAARAVVQRHDGRVPADPA ALRALPGIGEYTAAAVASFAFGLPETVVDTNVRRVIARAVAGEALPGRSLTRAEMRRAQA LMPADPARANAWNAAVMELGALVCTARSPACDRCPLAEMCAWVAAGSPPPAEVPRGQAWA GTDRQVRGAVMAAVREHGRVAEAEVPAVVVAGGRLGSHRPEDAQWTRCVAGLVADGLLAR DDDGGLTFPA >gi|289557518|gb|ADCD01000054.1| GENE 18 16701 - 17546 313 281 aa, chain + ## HITS:1 COG:no KEGG:Mlut_01580 NR:ns ## KEGG: Mlut_01580 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 281 1 276 276 296 91.0 7e-79 MPSRPTSPGSKPSPAVYRRRRLVAALLALVLLLLVGWAVVALVRAGIGAFSSEDADPSAA PTPVHSPSPAPATDAESGSASPTVALEDAAECQPSDLRIAASADRSEYQRGEEAELRLGI TNLSSTPCRTDVGTARQEFTIRTAEGDDVFSTRICQADPAEAQRVLYPHEELTAVYRWSG RASSQDCGRPGALAEPGPHLLTVGLGDVTSRPVALKILEELAPGAQDSSSSAAPSSATPS SSGSASPSGSGSAPASASASASASPSPASVSTTDPSPSPSR >gi|289557518|gb|ADCD01000054.1| GENE 19 17560 - 18996 1138 478 aa, chain - ## HITS:1 COG:MT3691 KEGG:ns NR:ns ## COG: MT3691 COG1066 # Protein_GI_number: 15843198 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted ATP-dependent serine protease # Organism: Mycobacterium tuberculosis CDC1551 # 13 430 8 424 480 399 56.0 1e-111 MATKTAPKRAPGYRCTECGWTTVKWVGRCGECQSWGTVEEIGLTSTTGRTRAATVAEVAP RIADVDATLASFRSTGVRELDRVLGGGLVPGAVILLAGEPGIGKSTLLLDVAAQTARGAG GGGPRSVLYLTGEESAAQVRSRADRIGAIADTLRLTAETDLGRALGQIERTDPELVIVDS VQTLQSTEVDGIAGGVSQVREVAASLIRTAKEKGITTVLVGHVTKDGTIAGPRLLEHLVD VVCQFEGDRHSRLRLVRAVKNRFGPTDEVGCFDLREDGIESLDDPSGLFLSGVSEPVEGT CVTVTLEGRRPLVAEVQSLLTPSVGGSPRRTVSGVDAARVNMLLAVLQRRARFALAQDDC YVATVGGVRLSEPASDLAVAVAVASAKLSAPVPQGMIAVGELGLAGEVRPVPGIGRRVRE AARLGFTRALVPRSPEPLGDVPAGFTVAEVGSIGEALATIPTWTGGGPAAHPEAGPGR >gi|289557518|gb|ADCD01000054.1| GENE 20 19086 - 20255 1058 389 aa, chain - ## HITS:1 COG:Cgl2711 KEGG:ns NR:ns ## COG: Cgl2711 COG4129 # Protein_GI_number: 19553961 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Corynebacterium glutamicum # 50 386 37 371 389 116 26.0 7e-26 MTDRFATATGTVPMVDPQTRGERLGRFLRRRARAGWSRVRSSVGQAALVAVCAVGAYWFA ETVLGHQQPLFASTALLIALGFQREPKLRKVAEVAVGCTVGILIGDLLMVGLGRGLWQAS VVVFVSVMVARFLDSGATFTMQMSLQSVLVVLLPIGTGGPFVRSQDAIVGGVLALLVTFL SPQDVRRPAVRQLGGLYDSIATVLRDLSRALREDDSRTAWMALVASRGTHTTLEALRKEL RVTHEQTVFNPLHRSSRSFVDDAVNAADRSDLAVRSLRIVARRVVSVLDEGVFDDDDRER LAAWFDDAADAVEILHRSLVEPQAEGRHRSLSVARDALGASASTLDPHQLGGGSVHGEAL VMLLRPMMVDLIEATGAEHDEARAYLPRV >gi|289557518|gb|ADCD01000054.1| GENE 21 20482 - 21600 970 372 aa, chain + ## HITS:1 COG:Cgl2521 KEGG:ns NR:ns ## COG: Cgl2521 COG0226 # Protein_GI_number: 19553771 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, periplasmic component # Organism: Corynebacterium glutamicum # 45 368 50 374 375 190 38.0 3e-48 MKALRFGRSAALLSVAAIALTACSSAGNTDNGSSSSAAGDTGSEQATSEAKGQLKGAGAT SQESAIGAWADGVTSVAPELTVQYSPDGSGAGREKFLAGAVSFAGSDSAMKDEEADKAKE VCGDQGAFHVPAYVSPIAIAYNLPSVKEDIKMDAETVAKVFSGEIKKWNDDAIASQNEGV ELPDTDITVVHRSDKSGTTKNFVSYLSEAAPEAWTYEVAEEWPSDITAESAQGTKGVVGQ ASSTEGAITYTDASAVGTLGTVDVKVGDEYVKQSPEAAAKLVETSEEKEDGSLEIDRATT EQGVYPVVLVSYHIYCNQYDSQETVDQVKAFGEYVVSEDGQKAAQEAAGNAPITAATRDA AMKRIEAISVQG >gi|289557518|gb|ADCD01000054.1| GENE 22 21736 - 22695 611 319 aa, chain + ## HITS:1 COG:Cgl2520 KEGG:ns NR:ns ## COG: Cgl2520 COG0573 # Protein_GI_number: 19553770 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, permease component # Organism: Corynebacterium glutamicum # 25 313 50 355 355 209 43.0 7e-54 MTSPAVETTKGSSTSLRGSRRGTAGDSIFSGFALASAVLILLVLAFVAIFLVGEAWPAIK PGAELESADSFFQYVWPLMAGTVMAAIIALLLATPVAVGVALFISHYAPRRIAQPVGFVI DLLAAIPSVVYGVWGWLTLAPLMVPIYAWLNKYLGFIPFFSGSASTTGRTLLTSGVVLAV MVLPIITALCREIFTQTPKLHEEAALGLGATRWEMIKMTVFPFARAGIVSSIMLGLGRAL GETMAVTMVLSGGVFAWSLVESGKNQTIPSEIALNFPEAFGMRLHELIAAGLMLFVITLA VNMIARAIVNKHKEFSGAN >gi|289557518|gb|ADCD01000054.1| GENE 23 22793 - 23878 991 361 aa, chain + ## HITS:1 COG:Cgl2519 KEGG:ns NR:ns ## COG: Cgl2519 COG0581 # Protein_GI_number: 19553769 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, permease component # Organism: Corynebacterium glutamicum # 46 358 23 306 307 199 40.0 7e-51 MVVAAGAIVLGALITLLLADGFNVAGFLVITAVLFVIGMYVATRVLENRRRATDGLWRHL VWLAFLIALAPLISVLWSVIATGLPTLISNPHLIAYDMKGVTGVADANWVEAGMPAGDLP GGFGHALLGTVLITLIATLISVPIGMLTSIYLVEYGRGGWFSRAIVFFVDVMTGIPSIVA GLFAYAAVSWVLTLTMGSQSKALQTVQMGFSAAIALSVLMIPVVVRSTEEMLRVVPNELR EGAYALGVRKWQTIAKVVLPTAISGIASGVTLAIARVAGETAPILVTAGFAQSVNWNPFD DWMTALPVYIYRQLVSPLSPTAADPSTARAWAAALLLVFIVMMLNLAARLIARAFAPKTG R >gi|289557518|gb|ADCD01000054.1| GENE 24 23964 - 24743 196 259 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 214 1 207 223 80 28 3e-14 MSKRIQAIDVDVFYGKFKAVEGVNIDIAPRSVTAFIGPSGCGKTTFLRSINRMHEVLPGA TVDGQLLLDGEDIYGHGVDPVRVRSQIGMVFQRPNPFPTMSIRDNVLAGYKLNGTRLNKS RADELVEKSLRGANLWNEVKDRLDKPGSGLSGGQQQRLCIARSIAVQPDVILMDEPCSAL DPISTLAVEDLINELKEEYTVIIVTHNMQQAARVADKTAFFNIQGVGKPGKLIEYDDTDV IFNNPSSQQTEDYVSGRFG >gi|289557518|gb|ADCD01000054.1| GENE 25 24836 - 25807 788 323 aa, chain - ## HITS:1 COG:SA0619 KEGG:ns NR:ns ## COG: SA0619 COG0306 # Protein_GI_number: 15926341 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate/sulphate permeases # Organism: Staphylococcus aureus N315 # 2 314 23 327 335 115 28.0 2e-25 MGFRDAPNAAALPVRYRALTPRGALLLTGAVNTVGALLGIGLITLSVHYFTSPAVRSEIG PLAVGVSCVVTLVWGLLLWWRRLPGSSTHALISALAGSHLAVRLSLDIDVALTIFDLVRA EVLLSLLLSPLIAWALARLLTAPAMRLATRGTTVNVQHRARVALGISASAMAMGHGLQAG QRMGVLWAAVLVGSGSVLAPDALTAEFVGGAFLFALAVGLGTLGGAWRIAWTLTERLVRL DPLRASVAAVIPAGLLFVGSLVFHLPLSSTHTATAAIVGAGQTQTYASVRWPTVLRVVGW WVLTPVACALLGLLGTLALVPLA >gi|289557518|gb|ADCD01000054.1| GENE 26 25016 - 26704 664 562 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MEHQGSDEQQARGDDGGHGRPQGVEAHETLGEGPGDPPGAAQRAEPDREGEQERAPHELG RQGVRRQDGPGPHQHGGPQHPHALTGLQAVAHGHGAGGDAQRDAGPVLDVDRGAPGGEPH GGGGEQAGERPRDQGREQQAEQHLGADEVEDGEGDVDVQTQAHGEVAARQRGDQRVRAGA GQAPPPQQQTPHEGHHAGHAHGQGADLAAHRGRGEVVHAQRDEPDAQQRAHGVDRSGQEE GPARCQRPVPDRQRRGVGGVAEPHQRADGAQQHEDDGEPRGHGASTGSGLTDEHHAQVHV HAGEGLERRVQRPGDLALAVVVALQQVHAEVGEPLDHDPLRAAGGAQQLHPRGLQGVEVA YLGGAAGEQLGLPPHGLEDVEGVRRQLLEVGPLDQHARRHDAPGGRVHAAGQPVEVLTGQ RSHVGAAQRGEEGHEGGARGRVELLELTGGTVRLGSAGPRDLGHQMHGPVQGLGEVRHVA QRRGVAREEPGHAGGHGQRSLSRRRVAKGSTTTPDRERLSAEGRSQRLCVGARGYQRPGA VPISLAIRPETLDPPPPGRRRC >gi|289557518|gb|ADCD01000054.1| GENE 27 26643 - 27317 545 224 aa, chain - ## HITS:1 COG:no KEGG:Mlut_01670 NR:ns ## KEGG: Mlut_01670 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 224 1 224 224 286 99.0 4e-76 MARHRLPAGRGASSSASGVLRPHRPRLSEPQELTHFAGGEDPQEVAAAASRLAHALVAGG RAEEDPAVVERLVGLVRELGVETLAELWADAPPVSLAGALWRLYALQEATTRDGERWAAW YRAGHAAYASRVVAGAVEPPGPAELRRLTDTILTGAYRSEIDVAFERAAAYARVVALGQV EHAEGSEAAAPDRAAALTRRAARLVSTADALEAAGRAFRDGSLD >gi|289557518|gb|ADCD01000054.1| GENE 28 27610 - 28335 563 241 aa, chain + ## HITS:1 COG:no KEGG:Mlut_01690 NR:ns ## KEGG: Mlut_01690 # Name: not_defined # Def: predicted esterase # Organism: M.luteus # Pathway: not_defined # 1 241 1 241 241 454 99.0 1e-126 MSPTPAPVTETISSGHSVVWSRPPAERAGTDLVLVFHGYGSNEVRAARRHFPMLPERCTG LAVRGGFEIDETASEGPGDPGAHGWFLLDLLLQSDFAQVLAAAHRVFDVLSAEEVVAAGF RTVSVLGFSQGMAMATTVLRLRPEAFTCGVGLSGFAVVNELLAMLDSPAEGPGPRPFFWG RDAEDPVIHPDAVAHTRAWAEEHTRLTVRTYPGILHGTGPDEVRDVRIFLEHSLRAATPG S >gi|289557518|gb|ADCD01000054.1| GENE 29 28369 - 29256 894 295 aa, chain + ## HITS:1 COG:no KEGG:Mlut_01700 NR:ns ## KEGG: Mlut_01700 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 295 1 289 289 429 96.0 1e-119 MAKNSTIGRYASGKVKDFGLKSALDENGEPTEGFEKALSTVLAVQRPLVLKNIQRMAAKH PGESPERLAERLGQQYLTTVTGAGAAVGGTAIVPGIGTVAALGLSGAAVAGFMEGTALYA QSLAELHGITTQDPQRAQALVMGLMLGDDAKELLREAAAKAGRPYDPQSSLNALAGTASG TGISAFVVDRLKRTFMRKMLLRQGAGFVGRAVPFGVGAVIGGVGNRAMGKAVMENAAELF GPLPMVIPGEIREGAAQGRADGTKDDGGVFGAIRRALPGGKDEKDDRQKKGKPAA >gi|289557518|gb|ADCD01000054.1| GENE 30 29385 - 30587 997 400 aa, chain - ## HITS:1 COG:MT0490 KEGG:ns NR:ns ## COG: MT0490 COG2733 # Protein_GI_number: 15839862 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Mycobacterium tuberculosis CDC1551 # 1 400 6 408 408 289 40.0 6e-78 MKAVALGLLILLAVVFVVAFPLQDTHPVWGYVRAAAEGGMVGALADWFAVTALFRHPMGV PVPHTALIPRKKDQLGAALTEFVQENFLDSEVAHEKVDGLKVAEAAGGWLRREENAARTA REIATAARGAMAAADDDAVQELLRQLMERHMVAPDWSPTLAGVLEDVVAGRHHERVVDLV VAHTGDWVAAHPELFVETVRRRSPEWSPDLVDRLLAERLHAETLKYLAGIRRDRQHEARR AVDDWLDRLADEMRNEPATRASVERFKRNLFADERLRAWAGRAWVSLRDSLLDALEDPSS DLHRALVAALRDLGARLQEDPELRDRVDGHARRAAAYALSSYGPALTGVIEETVARWDGE QTARTLELFVGKDLQFIRINGSVVGALAGLAIHGVATLFL >gi|289557518|gb|ADCD01000054.1| GENE 31 30420 - 30728 64 102 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MAEQRRDREPVRQRADHAALRGGAHVAPHRVGVLQRERDHEHHGQQDEQPQGDGLHAPQA RRAFEGAGAEQLLGGVGGEGHGRLLIARTEWSPPVNQPGTLR >gi|289557518|gb|ADCD01000054.1| GENE 32 30829 - 31686 656 285 aa, chain + ## HITS:1 COG:Rv3842c KEGG:ns NR:ns ## COG: Rv3842c COG0584 # Protein_GI_number: 15610978 # Func_class: C Energy production and conversion # Function: Glycerophosphoryl diester phosphodiesterase # Organism: Mycobacterium tuberculosis H37Rv # 4 275 35 269 274 91 32.0 2e-18 MLHALAVGADGLECDVQLTRDREVVCWHDPTVDRTSDGHGAVADHTLDRLRGLDVVSWHA RRPGAEPATTTAPPAAYGGAGEQVLTLADLLAIATAADRPLRLAVELKHPSPFGHELEER VLRELLRAGWDPETGRVGQVQVSLMSFHPDALRHVAPLAGTDPLCPLMDLMPTELPTRFA RGPLSRAAVRAAARQSLAGSEALVWRGRAGLAGPSVAYVREHLADVKAWLAAGRRLRVWT VDEREDAEFLLAQGVQELTTNRPEDVLRWVRDRAAARRERMPTGA >gi|289557518|gb|ADCD01000054.1| GENE 33 31842 - 33524 1660 560 aa, chain + ## HITS:1 COG:BH3644 KEGG:ns NR:ns ## COG: BH3644 COG0747 # Protein_GI_number: 15616206 # Func_class: E Amino acid transport and metabolism # Function: ABC-type dipeptide transport system, periplasmic component # Organism: Bacillus halodurans # 48 560 54 557 557 302 38.0 1e-81 MATRLHHRLLSAAALTAAGALLVTGCAQSQRDGGGSGGSGGGDAAQVDGSFIFAASSDPK TLDPAFASDGETFRVSRQIFEGLVGTKPGTADPAPLLAESWESSEDGLTHTFTLKEGVRF HDGEPFNGEAVCANFDRWYNFTGIQQSETLSYYYGKLFRGFADKPEDAVYKECEATGEHE ATITLAQPFAGFIPSLSLPAFAMQSPKALEEYKADEVGGTAESPQLSEYARAHPTGTGPY KFESWSVGEDIKLTANEDYWGEGGEVTDITFRVIDDPVARRQALEAGDIDGYDLVAPADT AALSEAGFNVAARDPFTILYLGLNQEKEELQDVRVRQAIAHAIDKDALIAQTLPEGTEPA TQFIPKSVNGYSEDVTTYEHDPAKAKALLAEAGYPDGFTIDFNYPTGVSRPYMPTPEQAF SNLSSQLAEVGITVNAKPAKWSPDYLDQVQGSADHGIHLLGWTGDYNDTDNFVGVFFGQE KPEFGFTDEELFSALEEARQIPTLEEQTPKYQEINEQISEIVPAVPLAHPAPSLAFDKRV ASYPASPVNDEVFNEIDLTE >gi|289557518|gb|ADCD01000054.1| GENE 34 33661 - 34665 268 334 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167855436|ref|ZP_02478201.1| 30S ribosomal protein S21 [Haemophilus parasuis 29755] # 65 329 43 310 320 107 27 2e-22 MLRLIGKRLLLLIPTLFGLSVLLFVWVRSLPGGPATALLGDRATPEAVARVNAAYGFDKP LLEQYVTYMGRLLRGDFGTSIMTNRSVVEEFADRFPATLELSIFAIVFAVVIGIPLGYWA ARHVGRWQDDVAVVLSLIGVVVPVFFLAFILKWVFAVKLGWLPTDGRQDPRIDATHYTNF YVWDGIITAEWDAALNALTHLVLPGIALGTIPLAIIARITRASVLDVQDADFVRTARAKG LAPRLIRDRFIMRNALLPVSTTLGLQLGLLISGAVLTETVFAFNGIGRFLAQAIFQLDFP VLQGFIIFIALLYSLINLVVDVSYGLIDPRVRVS >gi|289557518|gb|ADCD01000054.1| GENE 35 34662 - 35654 900 330 aa, chain + ## HITS:1 COG:BH3642 KEGG:ns NR:ns ## COG: BH3642 COG1173 # Protein_GI_number: 15616204 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Bacillus halodurans # 35 325 20 302 306 208 40.0 1e-53 MSVNLPPSPGGGPTEHAVDHALAPVEAGATQATTEAAADARGTSVWGAAFQRLRRNPAAI AGAVIVLLFVLVAVLAPVLAPYAGTATPGMREIRPTHVPGPGEVAGYPLGLDRFGGDVLS KLIWGAQASLLIGVISTAFGLVGGMLLGLLAGTFGGWVDSVVMRVVDILLSVPNLLLAVS IAAILGQTPFAVMIAIGVAQVPVFARLLRSSMLTQKGSDHVLAAQTLGLSRGRITMSHVL PNSLGPVIVQATLTLATAVIDAAALSFLGLGGGRPETAEWGRMLTYAQAELGINPWLAFL PGLCIAITALGFTLLGESLREALDPTSRRR >gi|289557518|gb|ADCD01000054.1| GENE 36 35657 - 37411 654 584 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 320 569 11 266 329 256 49 3e-67 MDPKHDDGAPGPGAAPAVPAAGAPLLEIRDLDVEFTTQQGTVQAVEGASLTLPAGGTLAI VGESGSGKSTTAMAAIGLLPGNGRVTAGSVRFAGEELVGLPESQMRGIRGRRIGLVPQDP MSNLNPVTRVGQQIGETLLTHGMATKKDVGAAVVEVMERAGIPEPARRAKQYPHELSGGL RQRVLIAIGLACRPQLLIADEPTSALDVTVQQVILDQIDEMTRELGSSVLLITHDLGLAA ERAQQLVVMHRGRVVESGDARAILEDPQHAYTRSLVAAAPSVAAARLLPEAFDPAPAALA EDDTAALTTVALAKQDLTPLVEIRDLTKVYPVRGHEDFTAAKDVSLKIPRGKTVSIVGES GSGKTTTARMLLKLIEPTSGEISFEGKDVLALKGEGLKDFRQRVQAVFQDPFSSLNPSFT VGRIIEEPLQTYRRGNARQRRARVLELMDQVALPSHFHRRYPAELSGGQRQRVAIARALA LNPELIVCDEPVSALDVLVQDQILTLLRRLQDELGLSYLFISHDLAVVRLISDYVCVMKD GRVVEAASSEEVFTNPRHPYTRRLLASIPGNELGIAVEADGTHV >gi|289557518|gb|ADCD01000054.1| GENE 37 37505 - 38845 1282 446 aa, chain + ## HITS:1 COG:SP0159 KEGG:ns NR:ns ## COG: SP0159 COG1914 # Protein_GI_number: 15900097 # Func_class: P Inorganic ion transport and metabolism # Function: Mn2+ and Fe2+ transporters of the NRAMP family # Organism: Streptococcus pneumoniae TIGR4 # 24 336 7 301 420 67 22.0 6e-11 MAHAVDPGRPVHNPDIVGFTDAELNETPIRPRWNSLGPGIVAAATGVGAADLVATLTAGS RYGYMLLWAVVLGVIFKIVLVEGVGRYYLSTGKTIFQGWRTLGAWTSWYFGPYILIWGIV YGATAMSSTALPLAALFPGVDSKVFAIASGLIGLGLVWLDRYRLIEWLMTVLIGVMFVTV LLSAALTVPNLGEILAGLVPRLPSGDPQAMFYVLGLAGGVGGTITLAAYGYWLREKGWNV PKYLKVMRFDNATSYILTGIFVIATMVMGVELLHSAGLAISSGDKGLLDVGDVLAERYGS VWSTVFLIGFFAASFSSLLGVWHGVSLMFADFWTNFRRPAEELDQDDAPSLSSKPGRFFL LWLTLPPMALLFLDRPIFLILLYGTLGALFMPFLAVTLLFLNNKKDVPRQFRNGWVRNTL LGLTAAVFVAIGVNELLKALQPVLGG >gi|289557518|gb|ADCD01000054.1| GENE 38 38877 - 39254 318 125 aa, chain + ## HITS:1 COG:Cgl1190 KEGG:ns NR:ns ## COG: Cgl1190 COG0011 # Protein_GI_number: 19552440 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Corynebacterium glutamicum # 1 110 17 117 117 92 52.0 1e-19 MIVAFSVAPSGQPADAEHLPGDADTASVHRAVAAAVAVVRASGLPHRTSSMFTEIEGEWD EVMEVVRAAVDAVSPYGSRVSLVLKADIRPGHTDELDGKLERLESALAEDEERRAAPAPR DGDAG >gi|289557518|gb|ADCD01000054.1| GENE 39 39347 - 39910 284 187 aa, chain + ## HITS:1 COG:DR0125 KEGG:ns NR:ns ## COG: DR0125 COG0454 # Protein_GI_number: 15805165 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Deinococcus radiodurans # 6 162 5 148 171 58 33.0 6e-09 MPESVTVRPAAPGDVEALLRVKARSWREAYGALLPSAYLDAVEARIPEDVPAWTALIGSD RDLWVADDGGRLLGVALAGPRRSAAETGRTGADDAAASPADLPDVELMVLYVLAEAYGTG LGARLLDAVVGDRPAMLRVLAENPRAVAFYAKHGFAAVGAPEPMTGPWAGLHEQLMVRRL PHDGGAA >gi|289557518|gb|ADCD01000054.1| GENE 40 39793 - 41775 640 660 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVRDAAAGGADDRTGEAAQAARAHHGEAGGGGLVHQHVHGGAVHELGEDLEAGELGADPR GAGVETLAQLPLAGLLVQADGQPRGVRAQGRDGAHELQRGLAEAGLLCGLESGGTALLGT VDAHHDGGPVPRAAGVDPGGDEGDRAVRVAGQRGGHRAEQATHEAAAAAGARDEQGGVGG ELHEDAGRVADLHAQLRTHPVGVELAGDLLQEGLHALAEAGVVQDGAAGVRAVAPVRGDR VGGDEGQRLAAQAGLALGPAGGGDGLVGAVHTHQDAEGCVLTAGGGGLGLGGHGDLLESD STGPGRTRPSASSLRLGARDEPRDPGRDARGEAAWILREPGREGVHAQGAGQAVAGVGAG RGVHGRAGHGGVRRRHDDVAATPPLEHGRVRDHLDVLERGDDGGHVRPHRRQVRPAAHVE HVQPARGEDPRGGAGRVQAGEARRGDVAGAGQVRGVRGEDVADDQVAAGRVGRGQDLGGV GHADAQGRGAGQAEALAGEGGQAGVDLHRGLVGARVRVVHPAGERAARAAQVQGPQRRGL RPVRPDGRGGPAHVLEGHALGALGVQRGGLDAVDVEDERARLEGVLTDLGGAVGDRVDAR LDPSGAGGSSRDPAPARRRPAAHAAPPSCGRRRTISCSCRPAHGPVIGSGAPTAANPCLA >gi|289557518|gb|ADCD01000054.1| GENE 41 40897 - 41871 858 324 aa, chain + ## HITS:1 COG:MT2698 KEGG:ns NR:ns ## COG: MT2698 COG0589 # Protein_GI_number: 15842163 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Mycobacterium tuberculosis CDC1551 # 14 300 5 291 297 114 36.0 2e-25 MSAQTQPAAPRREDAPLGVLVGVDGSDQSVSAARWAQREAGLRGEPLTLVTAYSIPAYWG YGADAGGAVLDDSRLREGVQALLEEVAGKLDADGVRPELRVEIGDAAGVLVELSADASLL VSGARGRGGFMGRLLGSVAAALPGHAHCPVALIPAGVDASRAGDRTAVVVGVDGSEQGRA AALEAAEEARLRQAPLKLVCAVPPLGANAAWLAVSLDEEARERELRERLDAGAAWISSEF PGLEVLTELVDGTPVDVLVDQTATARLTVVGTRGLGGFAGAIVGSTSRGVADHAKGPVLV VPFREDVRLGRRASFGPVQDQPES >gi|289557518|gb|ADCD01000054.1| GENE 42 41879 - 42232 355 117 aa, chain - ## HITS:1 COG:MT3944 KEGG:ns NR:ns ## COG: MT3944 COG3824 # Protein_GI_number: 15843460 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Mycobacterium tuberculosis CDC1551 # 1 116 1 111 133 95 47.0 2e-20 MSEQEFDDAVSAALTRIPDELARLLTNVVVVVEDEYEPQRWEDPATELFGLYEGVPLTER AEFAWQMPDRIVVFRGPLTRHCTSRAELEDEITVTVMHEVGHFFGISEERLHELGWG >gi|289557518|gb|ADCD01000054.1| GENE 43 42880 - 43146 259 88 aa, chain - ## HITS:1 COG:no KEGG:Mlut_01890 NR:ns ## KEGG: Mlut_01890 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 88 1 88 88 104 100.0 8e-22 MTDVPFEDREDERELETDLLADPNAAGDPEPEDGRDGQPVRGGSDDPQHWAGEGRAPDSL RNAESAAMHIEEDAQDRTRADEGDVEIL >gi|289557518|gb|ADCD01000054.1| GENE 44 43349 - 45208 1647 619 aa, chain + ## HITS:1 COG:MT0942 KEGG:ns NR:ns ## COG: MT0942 COG1292 # Protein_GI_number: 15840338 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Choline-glycine betaine transporter # Organism: Mycobacterium tuberculosis CDC1551 # 43 546 17 513 593 380 45.0 1e-105 MSDPTPPSTEPMIPEQPGNHPSSATAPDAGVAPATSAAAARDRVLLPWVFWPSAVIVLSF VVATLLAPEQMTVGIGLVQQAIITNFSWWYALVALFFVLFCGYLAFSRKGNITLGKPDEK PEFTTLSWFSLLFAAGMGIGLVFFGMTEPLMHFTSPRPDLAAANPTQAEAAQSALATTFL HWGLQPWAIYAVVGVAVALAIHRRGRPLALRWAFEPLIGERRVRGGWGHLIDNIALIGTV FGVATSLGLGVTQMSAGLRALGIVPEDSPWLEYAMIGAVTCVVLYTVVSGVERGMKWLSN INLILAAGLLLFIAIVGPTAFLFKEMVQSLGSYMQYFFANSLNVSAFYGAEGDAWQAGWS AYYWGWWMSWTPFVGIFIARISRGRTVREFIAGVLLVPTLVCVVWFGILGGTAVFLETTR PAGYTSVVGADGAIDSNTALFQVLEQLPAGTMLVVGAIILSGIFFITSADSGSLVMGMLA TGGDVNPKATVKIFFAIATSLMAAALLAAGGLSAIQVLAITIGLPFSVMMLLICLATFRS LGYSVARVEAVRRQAMLASIKDRLGLESDDDEVVDAGPVAASQWWASLSRDRRQRIADAA AGVPASEGPRRTRLRRDEH >gi|289557518|gb|ADCD01000054.1| GENE 45 45290 - 46798 1251 502 aa, chain - ## HITS:1 COG:PA5097 KEGG:ns NR:ns ## COG: PA5097 COG1113 # Protein_GI_number: 15600290 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Pseudomonas aeruginosa # 31 473 2 446 467 416 52.0 1e-116 MACPDPPPFERRLHVSTSPSGSRVAEPGAATADRGQLHRGLSQRHIMFIALGTAVGTGLF YGSAGGIQAAGPGVILSFLVAGAAVFLVMRALGEMTLREPVSGSFAAYASRYLGPFAGYV TGWTFVFELAVVIVADTAAITTYMAFWFPGVPAWAWVAATILVVGLINFTHVGNFGEAEF WLTLVKVGAIVAMIFGGVILLFTGASTADGTQASLANLVDHGGFLPHGILGVLTALTIVT FSFGGIETLGVAAGEAKNPEKVLPKAINTVPIRILLFYVLTMAVIMALVPWNRVDGKASP FVQIFEGLGVPFAPHLLNFVVLTAAVSAINACIYASGRLLYAMAHDGQAPRAFTHTNRGG VPWLSVAVMLGVMVLGAVLITVDPNAFSLVAGVASFAVVLTWAMIFLSHRAMRRRVAEQG AEPSPFPMPLGDVGTYLGLAFVATVVITMATIPDSRQALIIGLVWVAVLTLAWFVTGTRT SAAAHNRTGTLPVVRTRQSHED >gi|289557518|gb|ADCD01000054.1| GENE 46 47054 - 50806 2012 1250 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MARGQIDGIGRQVRHHEHGARRDRLARAQVPATARGDRERQHAACGVVVLGPRERARAQV ELAADLQQTPVQLEHGALDADLPVRRQRPEGRGLGQPRCGDALGGGRGAVVVRGGREAVG RLVRGPRQRDAAAVAAGLLAVRAEEVRVLAVLGGQGGVLGQAQLVALVDVRRAGQAQLHH RGRAGPTATDRLVRLLVLGRDAGGVGARVREAVAGGVAHRVVVREHPGVRCADPSGLLEG PVDRVGQRGGVPAGHEVGEVEGLVHLAGADVPEHARERGHPRLGHHHRLVVVGVQDPPPV PVDLVDAVLVHERGERLEGVRVERGVGVLARVRDHAHAGVLGVRVAGLLDEPVGHVHPEA VHAAVQPEPQDGAELLAHLLVLPVQVRLRGVEQVQVPLARGAVRLGHTGPGPAAERGLPV VGGQLAVLAAALGEVVAGALGGAGAGGEGGLEPRVLGRGVVRHEVHDHADAGLVRGGDHL VRVRERAEPRVHGAVVRDVVAGVVLRGEVEGREPDRVHAELGQVVEARGDAAQVAHAVPV RVREGARVDLVDHGVHPPWRDGPVPGFRGRGAQVLRGHGIHPRPDAGVRAPRGRRRRRGV RLGRPARSDATAGSGQPGQHPDGGPAAVQPFLRDAGGRLVTLLEGVDERPQVEDGVVRPH VPREAAVVQLDPRVGVERAEPLHHHRELTDQLRIRGVPREHRRRMPGPLPGGHDRRAPVR RALAVHEALHGLLGVEHREPAVRHTPRGGARLHAVVVRRAVLAVRVLARRVRVGGEAPLL LERHEGAAAVHGPRRRRDGGLVQPRQHRLLEHGRGHLGAQAPLVRAVEGGAVLVLEDPHQ VVLAGLRERVGHGPGQAAPGPFGRLGLHLGSRAVAAGDQSRLDRVRERGQRLEDAQVRGA ARDTRGRAVVVVVGHRGLTRGSAQLDDHGRVVRGALALALLAVDPGVRDRLCEGGGAQLE VDAHALLLGEGQARVVPVRVHAGAGVAGAHHVHQPGVLERVERRALGRGDVRVALALEQL DVPHVLVLRSDVPVAGQGEPGVRVLGEASGRVLLEHAQPLELVAHVLVLQAAPVGHVQAP QAHRGDAVGRLGAHGRPDGAGLLLRVHAALAEVRLAGEAALHVAQADAGGDGHAVPLRGA VVHHLVAGALEELPGEVLVPALGLLDGQDVDVMALEEGLDAVGAGTEGVDVPGGDLHPAR LSKGADTVGSAPQRHQSSWIVTGVVRLWRLRSQMPSSFSATSVGTSLPSR >gi|289557518|gb|ADCD01000054.1| GENE 47 50689 - 51597 845 302 aa, chain - ## HITS:1 COG:DRA0201 KEGG:ns NR:ns ## COG: DRA0201 COG0171 # Protein_GI_number: 15807867 # Func_class: H Coenzyme transport and metabolism # Function: NAD synthase # Organism: Deinococcus radiodurans # 1 302 8 280 287 281 54.0 9e-76 MRELQQRIIAQQGVLPEIDPAAEVERRVAFLVDYLAATGASGFVLGISGGVDSSVGGRLA QLAVERRRAQLGVTDAVALGGPGTTPPGEAGVGADVVPSRESPRFTAVRLPYKVQHDEAD ARAAMDFVGADQDVTLNIAEPVQGLAAAFAEAVGEPISDYNQGNVKARIRMTAQYAVAGA HGQLVIGTDHAAEAVTGFYTKFGDGGADVLPLAGLNKRQVRALGRELGAPEPLWNKVPTA DLLDGTPGQTDEAELGMTYEDIDDYLEGKDVPTEVAEKLEGIWLRSRHKRTTPVTIHDDW WR >gi|289557518|gb|ADCD01000054.1| GENE 48 51656 - 52102 476 148 aa, chain - ## HITS:1 COG:no KEGG:Mlut_01970 NR:ns ## KEGG: Mlut_01970 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 148 1 148 148 247 97.0 8e-65 MSEIPHDDAPVQHPSGLPLAHWLTLTEGLIAARVAESLEEHGLTRAQWQLLNTLTVAPQS RAELEAGFEEEQRGAVPGQMEELVESHWVTVEGDLYTLTATGRTAGARVGEAVEALRAEA TADVPRDQIDDAVRVLRRIARNLGHPDA >gi|289557518|gb|ADCD01000054.1| GENE 49 52170 - 52757 579 195 aa, chain + ## HITS:1 COG:MT0395 KEGG:ns NR:ns ## COG: MT0395 COG0461 # Protein_GI_number: 15839766 # Func_class: F Nucleotide transport and metabolism # Function: Orotate phosphoribosyltransferase # Organism: Mycobacterium tuberculosis CDC1551 # 15 195 5 179 179 174 59.0 8e-44 MTDAQTPTVPTPEQDRERLKQLIQELAVVHGRVTLSSGKEADYYVDLRRVTLHHEAAPLI GRVMLRLLEENGIEFDAVGGLTMGADPVATAMMHQAGAAGRALDAFVVRKAQKSYGMGRQ VEGPGVDGRRVVVLEDTSTTGGSALTAVEGVRNAGGDVQAVAVIVDRATGAAERVAEEAD VPYLYAFGKDELGLD >gi|289557518|gb|ADCD01000054.1| GENE 50 52786 - 53958 993 390 aa, chain - ## HITS:1 COG:Cgl0061 KEGG:ns NR:ns ## COG: Cgl0061 COG0598 # Protein_GI_number: 19551311 # Func_class: P Inorganic ion transport and metabolism # Function: Mg2+ and Co2+ transporters # Organism: Corynebacterium glutamicum # 46 390 54 373 373 203 35.0 4e-52 MARSLHGATVARASWNTPGATVGENVRVSMIDNAVYVDGRRVHAPSTLEDTWEECERTGG MAWLGLYRPDVAELQAVAEELRLHPLAVEDALAGGERAKLDRYGEDSFMVLHPARYIDRT ETVEFGELGVFTGEHYVVTVRHAEEPDLAAVRRSLETEGRERLAMGPWQVTLEILDRVVD DYFPVADGLEQDIEEIEDQVFAGDGHVSRRIYQLSREVLNFQHAIRALPSIVEQLQEEVR TRLHEDTRHLDADGLPRRDDAHAWEDEELSDQARLEVENLRRLRDVHDHAVQINERVTTM RQMLHSALELDSTLASKRLSEQSIAQNEQVKQISSWAAIIFAPQLVGSVYGMNFDDMPEL HWAFGYPFALGLMLAVALTLFVLFKRADWL >gi|289557518|gb|ADCD01000054.1| GENE 51 53533 - 54309 356 258 aa, chain + ## HITS:1 COG:no KEGG:Mlut_02020 NR:ns ## KEGG: Mlut_02020 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 137 258 1 122 122 169 96.0 7e-41 MTHRHHVVLAGEDAQLAELHGLGAVDVAGRVQDHERVLAVAVQLGALAPGEGVLHGERVQ AQLLRDRLELGHVRAVQAQPGHAAGALALLPGVLEGGGGVDAPPVHVHGVVDHAHSDILP DGGPRRIPGCARYGGAMKTPRHAPPVVRDGKTLLPAHAVSTAPVTAFGLIGGYLTARETG IRPLGGVVLAAAGLYAGRTWLATRGPAVAGGLAALYLGGFGASHPLAKKIGAWPAVLSVA AVSAGAAWAAVDRSEAGR >gi|289557518|gb|ADCD01000054.1| GENE 52 54228 - 54998 328 256 aa, chain + ## HITS:1 COG:Cgl2714 KEGG:ns NR:ns ## COG: Cgl2714 COG0566 # Protein_GI_number: 19553964 # Func_class: J Translation, ribosomal structure and biogenesis # Function: rRNA methylases # Organism: Corynebacterium glutamicum # 42 236 1 200 206 244 62.0 1e-64 MAGRALRGRRVRRGRLGRRRPVRGRPLSEPAPAEDGAAPREVGVGPWLGPWPEDPRYDPE LLAHGDRRNVLDRYRYWRLEAIVADLDARRHPFHVAIENWQHDLNIGTVVRTANAFNAAG VHIIGRRRWNRRGAMVTDRYLHVHHHETVEAFTEWAAGEGLPVLGVDLFPESVPVETFDF PRACVLVFGQEGPGLSAEVRAASSAVLSIAQYGSTRSINAGVAAGIAMHAWIRQHAASPE SGASQTIPGASQTIPR >gi|289557518|gb|ADCD01000054.1| GENE 53 55130 - 56026 782 298 aa, chain - ## HITS:1 COG:SMa0717_2 KEGG:ns NR:ns ## COG: SMa0717_2 COG3386 # Protein_GI_number: 16262834 # Func_class: G Carbohydrate transport and metabolism # Function: Gluconolactonase # Organism: Sinorhizobium meliloti # 19 297 22 301 302 150 36.0 3e-36 MRAEQVTDPITYHGEGPVWAASWGSAAEGVTAGGGLRWVDMLAGDVLSLRADSTVDRTHV GDVAAALRPRAGGGAVVAVERGFALISPEGALTTLPELWGADAGIRMNEGGCDPDGRFHC GTMAYAKTPGAANLYRLAPGPDGGAGEVDVVLTGATTSNGLEWSPDGTRAYYNDTPTRQV AVFDYSREEGLTNRRVLVDVLDGEGKPDGLTVDAEGGIWVAVISHGQIHRYTPEGTLDEV VEVPVQKTTACTFGGDDLGTLYITTSWENLERGEDPLAGALFAVRPGVTGLPARPFAG >gi|289557518|gb|ADCD01000054.1| GENE 54 56078 - 57433 1012 451 aa, chain - ## HITS:1 COG:no KEGG:Mlut_02050 NR:ns ## KEGG: Mlut_02050 # Name: not_defined # Def: secretory lipase # Organism: M.luteus # Pathway: not_defined # 1 451 1 451 451 700 96.0 0 MAPARRPSRPLALAAAVAVVAGFGAPHAALAQESAPTPDAPEVSSTVEDLSQPATTAEDA RWNAARDALAATSADDPFYLPPTTVPATPGALIRTEPTAFYLDPVRLVQVPAHATRIMYA SQDAQGRPVAVTGTVLTPTAPWTGGGERPVIGYAVGTQGAADRCAPSRTLSTGEQYEGVG ITSLLSRGHAVVVTDYEGLGTPGTHTYMVREAQAHAVLDAVRAAAQVSGSGVTATAPVAL AGYSQGGGASAAAAELAPDYAPELDLKGAYAGAPPADLVQVAGRIDGGLYAAFLLYAMAG QLAAYDVDPATHLNETGLAALTGAAETCMAGSLAYAHLDSATLTHTGQDFPELVRSDAEL AGILAEQRIGAQGRRPDVPVMIAHSVTDDVIPYRAGRDLGRRWCAEGARVRFDPLLTPTH VGGHVAALPRMGAFLDATLADRWTADSCGWF >gi|289557518|gb|ADCD01000054.1| GENE 55 57629 - 58651 1047 340 aa, chain + ## HITS:1 COG:ML0286 KEGG:ns NR:ns ## COG: ML0286 COG0191 # Protein_GI_number: 15827063 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose/tagatose bisphosphate aldolase # Organism: Mycobacterium leprae # 1 340 1 343 345 439 64.0 1e-123 MPIASPEKYAEMIDAAKNGAFAYPAINVTSSQTLNAAIRGFAEAGSDGIIQVSTGGAAYF SGSFVKDMVAGSLAFAAFAREVAKKYSVNIALHTDHCPQDKLEGFVLPLLDASEAEVKAG RDPIFNSHMWDGSAETLEENLRIGRELLARTHANKQILEVEIGVVGGEEDGVAHEINEKL YTTVQDGIATVEALGLGEHGRYLTALTFGNVHGVYKPGNVKLRPEILQEIQQAVGEKFGR ERPFDLVFHGGSGSAAQEIADSVEYGVVKMNVDTDTQYAFTRPVAGHMFANYDGVLKVDG EVGDKKQYDPRVWGAKAEEAMAARVVQACTELNSAGKSIG >gi|289557518|gb|ADCD01000054.1| GENE 56 58711 - 60177 1154 488 aa, chain - ## HITS:1 COG:no KEGG:Mlut_02070 NR:ns ## KEGG: Mlut_02070 # Name: not_defined # Def: predicted transcriptional regulator # Organism: M.luteus # Pathway: not_defined # 1 488 1 488 488 917 99.0 0 MMTRPLPEDSATVDAVALGRRVRHLRKQAGLTLDQLAERTGVSGSHLSLVENARREPRLS LVQRIAEVLGVPVEDLLTGRAPTRRAELEIEVERFARSEHYASLGLPPLRIGPRTPTEVL EVIAGLEAELRRRLEEQAATPEEARRANAQLRAQMRAVDNHYPDLEAEAHRLLDAIGHTG GPLGLHAVSELAEHLGFTLRFVPDLPHSTRSVTDLKHGRIHISGSRSSDHDRRTVVLQAL AAAVLGHGEPRDYEDFLAQRVAVNYLAGALLMPQRAASSLLRAAQKRRDLSVDDLKDAFG VSYEAAAHRFTNLATVDLGIRCHFQKVHETGVIHKAYENDGIVFPADHTGAIEGQQACRK WGARQAFSRNDRFRAHTQYTDSPNGTFWCTSMIENGPDGQFALSVGTPFEHARHFRGADT RHRVTSTCPDPRCCRRPDPELEAAWGGHVWPAARMHAHLLAAMPTQTFPGVDEREVFEFL QAQEEREG >gi|289557518|gb|ADCD01000054.1| GENE 57 60415 - 63516 1463 1033 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MPAVRAQGEERRVLRRQSRLAEHAHRVLEPVALGQRAGEDPSVLLADQLLHPAAVGGPHA ALGQLHTGAVVGPLPDLGPGDLRRGGVLHESVDRGGAVPPQPGLDVADPDLDVHPHAGLG HRARGRGDVEQGGLVRLHVLAAAGADLVRGLAEHGVELLPGDRHEVRVRHPRAVEAVAGL AGLVRAHLLQRGGVGLLVPAVRDHGGHAADRRGAAPVAGPDQLLRVGPHHRLGHGHLRAV REDELGPAVPEVLDDGEDVVPAAGVQASGVVAQLVQDLLHLERRGDRLDQHGGPDGALGD AQLVLRRHEHAVPQPRLEMGLELGQVEVRAVAAADQLVGVVEEVQAEVHEGARHRLAVHA DVVLDEVPAARADDDGRPVRELALAQPVLLALGGGEVDLVADRVEQVDLPVQHPVPGRRR GVLEVGQPARGARVEGVDGHLPIHGAGDLHAAVVQAGGQRRHPPGVVLADPAGGPQVVRV PAVGDAAPGVLPLLEQPPAAVLGQPVQAAEERQRLVREDLSLPPVDRPVDGHHGGGALGD DDGDGLGAHVMRQGRVLPSVVGMDLVQGGGHGLRAHGTASSRSRLSGSVELAGLRGARQG HRGAVWVDGGGHGVEVAGADLALVLGRGVAAGLVGELALLQLDVRGHLALVVALGQVEHR VVQGVEAGQRDELEGVAHGAQLALELGDGVVVEVLLPVEGRRAVVGQHLVRELGLDGLGE LPGQLEVRGAGLHPDQVRVRGVGLGAGDAGLDAVADLVEALRGALTGDELGVALVHVRGD QGGRLGVGAGDDHAGHVGDVGGQAGGVERADVLAGGDEHLAAEVAALLLGGQLVLPVHAG GAGGDHRLHELVGVERAAEAGLGVGHDRHEPVLDAADALGVLDLVRAQQGVVDAAHHLRH GVGRVQGLVRVRVAGEVGVRGDLPAGEVDGAQPGLDLLDRLVAGEGAEGVGELTAGVLVL QLGPQLLGAATGQRVLLLDPAAETDDVLGGEAALDAGPAGVVLPVVLELLGGGGSGVVGL GGHDVLLGIGPVR >gi|289557518|gb|ADCD01000054.1| GENE 58 63618 - 64832 774 404 aa, chain - ## HITS:1 COG:no KEGG:Mlut_02100 NR:ns ## KEGG: Mlut_02100 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 375 1 375 406 578 98.0 1e-163 MTHPAPARRRAPLAVGVAALALALAGCGSAGQSGEPASSTAAAPSGSAASAAAGSATESP TDPASAAASRVREARASESAEGTPRAEPRQAFETVGPGIKDGAATEAWKNTAAVRNDTVS VMDCTRDVLDQRTLDAVATHIPDSSNIEIVQLFASQDETHEFLTCVYNGYFEYSPGMPLA QVHYQHNLDGSRLEWCQEEPAAVADEYTFDPKTGKGLLALLRPGMVGGQDGAPLLPQRTA WACSEDGSEMVSVTMGSMEGFGDANGGLTQVKNSPVAQSTTLVTETRDHLADTVLKDAGE FQEVIKLSSPFFLNAQMDEETLAQAREIPTGRVPDELLNNQSTIDRPEGAPGPVAPGQPP RPFQGAAREAAESQRAAEASASASASPSPTKSASASPSPSTSGD >gi|289557518|gb|ADCD01000054.1| GENE 59 64284 - 65450 704 388 aa, chain + ## HITS:1 COG:no KEGG:Mlut_02110 NR:ns ## KEGG: Mlut_02110 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 242 388 1 147 147 248 97.0 3e-64 MDLRQGHAGAVLEVAVVDAGEELVGLVLRGEQLHDLDVRAVRDVRGDSVQGALVQDVARA VHHGDGVVADRGRVLPGLGGGAVLDARADGLERLTRLGARGALGGLRRAGLTDAGRRGGR RVGGALRGRAGRGRGRRSAGRRGSRRGGLTGLAGRAAAGQGEGEGGDADGQRGTAAGGRG VGHGGSFDGIGGPAPGAWGGGRTLRLRYRTVLDAGTAIRPASGAVDRLGRDRIVREEKRH PMSESLIGKNLMEPPATRLPEEPEVLARLEAGDLPEDIVPVAPESSLVWALMAEDAWAEG RTVDSYAYARVGYHRGLDALRRAGWRGAGPVPYTHEPNRGFLRALYALGRAAAGIGESEE VERIRTFLRDSDPTAEEQIEADQGRARG >gi|289557518|gb|ADCD01000054.1| GENE 60 65489 - 66100 606 203 aa, chain + ## HITS:1 COG:PM1236 KEGG:ns NR:ns ## COG: PM1236 COG1435 # Protein_GI_number: 15603101 # Func_class: F Nucleotide transport and metabolism # Function: Thymidine kinase # Organism: Pasteurella multocida # 1 194 11 186 192 124 39.0 1e-28 MNSGKSTGLLQAAFNYEERGQRVLLAKPEVDVKGEGDVVSRLGVTRAVDLLVPAGADVRE LFRRHATGDDPDALVGHVEAPPVACLLVDEAQFLEPAQVDDLLRIAVLDGVPVIAYGLRT DFRTRSFPGSARLLELAHSLEELKTICRCGRKAVFNTRKVVDPATGAEHFVFEGDQVAID GVQVTYESLCGTCYLAESGGALG >gi|289557518|gb|ADCD01000054.1| GENE 61 66278 - 67687 1189 469 aa, chain - ## HITS:1 COG:BH0358 KEGG:ns NR:ns ## COG: BH0358 COG2031 # Protein_GI_number: 15612921 # Func_class: I Lipid transport and metabolism # Function: Short chain fatty acids transporter # Organism: Bacillus halodurans # 32 467 9 441 441 305 44.0 1e-82 MSATSTRPPTPGPSGRAVREGTFFSRAMRPLNTTMERFIPSSLVFTIVLTFAVAALCLLL TPAGPADVVVGWGDGLSGLLAFITQMALVLMLGHILANTGPVRRLLARLASIPRTPLAAY IFVFVVAAAASLITWGLGLVVGALLAKEVAAQARERGLALHFPMLVAAGFSGFVVWHMGY SGSGPLTAATPGSFLTESLDGRTVPVSVSETTFSWWNITAAVVTVLVVALALFLVAPRAG DRIVELEIDARDQDAVSAPEIETPADRLDASRVPTLLVGAMLVVYLVMHFVGGGTLTLDI VNWSFLALILLLVRSPHELIGLTQSAASNVGEILLQFPLYAGILGMMTSTGLVAVLSDAF VAISNPVTFGLLAFLAAGLVNFFVPSGGGQFAVQGPIMLQAGDALGVDPAITIMAVSYGD QWTNMIQPFWAIPLLAIAGLKMRDILGYTTVVLLASGLVFGGTLLLVSL >gi|289557518|gb|ADCD01000054.1| GENE 62 68008 - 69399 598 463 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MPEVSTACRVKSWLHLYNRPDAGVVDHVQHQPRNDRGPHQQHHPRGGAGSGVEHVAASPL RLDPVMHPSQGEHRSEGRDGHQRQTPPQSQVLPQPREHTGRTHQGGRHTDAPPPLTLIPH PAHSPLAATRPSAVERQMMRSWPEGSLPREGRRELGGEHRVGGTIHPAAREMQRLLLERA LVTHPHLLHDAQTRGVVREGMSLHASHTQIVECEAQQGSSKLRAIALPRLARIDRPADLG LGVPGFLPQAALTPRVLHRGLPDTDDDVSDPHGEAVPRREIGLSQRALTLRAAGGPRPHL LESAEAPHGGCIETPERGEGQPAGSQREADASTRGELQERGGHDRQGTNRSPRVSPRADP SPHPASMPGPRGRSGPVDLRQIPPRNPPPASVDDRFDHRAGLREGSALPARAVWGSGAIS SHRASGTTWNRDMPPRVSAIPGSILRRALGVGGHDVVDTYRGQ >gi|289557518|gb|ADCD01000054.1| GENE 63 68476 - 68964 282 162 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227378445|ref|ZP_03861905.1| acetyltransferase, ribosomal protein N-acetylase [Kribbella flavida DSM 17836] # 1 158 1 161 162 113 36 4e-24 MWGFCRLEQVWSWTSGRPESEGALRESYLAAGDRLTVRVGDVIVGVGKAAVQDAWSQGGL REEARDAQAEIGWTIDPRQAGQGYGTELARALLGFTFDDLGVRRVEAHAFADNAPSLRIM EKVGMRHEGTFKEESLHLTRGWVDGATYAMLASEFPSSLTRE >gi|289557518|gb|ADCD01000054.1| GENE 64 69462 - 69926 61 154 aa, chain + ## HITS:1 COG:MT0414 KEGG:ns NR:ns ## COG: MT0414 COG2963 # Protein_GI_number: 15839787 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Mycobacterium tuberculosis CDC1551 # 3 99 5 102 108 75 52.0 3e-14 MPAPRKYPDELRERATRMTLEARQDPATRTGAFRRVGEQLGINPETLRNWVRQTEIDHGH RPGITTSEAARVAELEKENRELRRANAILRSASAFFAADARDAHSADRGLHRRTQARVRC RADLRHAVRGRHTDRTEHVLRGQDAPSFSAQPAR >gi|289557518|gb|ADCD01000054.1| GENE 65 69757 - 70710 522 317 aa, chain + ## HITS:1 COG:Rv0796 KEGG:ns NR:ns ## COG: Rv0796 COG2801 # Protein_GI_number: 15607936 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Mycobacterium tuberculosis H37Rv # 8 308 1 310 312 301 50.0 1e-81 MLETPTALIVDYIDEHKHEFGVEPICATLSAAGTQIAPSTYYAAKTRPPSVRSLRDEQVL VEIRRVHEANYGVYGARKVHAQLRREGLQVARCTVERLMRAAGLRGISRAKGPRTTVPGR GPDERQDLVQRDFTAAAPNQLWVADITYCRTFSGWVYAAFIIDVFSRRVLGWQLSKSLRT DLALDALEMAFWTRQRAGQDVAGLRHHSDKGVQYVAVRYTQRLAQAGAVASVGTTGDSYD NALAEAFNSLFKAELIRNKGPFKSIEDLEIAVAEYIDWFNHRRAHGEIRLVPPVEFEDVY HHENPVPAPAGTALTSL >gi|289557518|gb|ADCD01000054.1| GENE 66 70979 - 72205 762 408 aa, chain - ## HITS:1 COG:MT1231 KEGG:ns NR:ns ## COG: MT1231 COG2508 # Protein_GI_number: 15840637 # Func_class: T Signal transduction mechanisms; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Regulator of polyketide synthase expression # Organism: Mycobacterium tuberculosis CDC1551 # 5 408 3 405 421 328 47.0 9e-90 MTEPWPAPSPPVRRLLRQAAELALRPRPEWTADIDAAALAGTRMEVIAADPVLAEGIRRT TTANLLHWAAANVKAPGRRVPPNLEPDNLETARDLARRGLGRTALDSYRTGQSLASRRWM AICFELTQDLSLLHELLDVSLLSIATFIDDTLDAVFAVLEAERDQLHRGSHAERRAVVAR IVEGAPISRARAETQLGHPLTGPHVAAVVWTTLEGDPAALEAAAEALAQAGGTARRLTVV ASSASHWLWLPLAAAPAVDDVASRLAGHPEVSVAIGRPGHDVVGFRRSHLDAAAAQRMMT RLASPQRIARYQDVQLVDVLTAEPVRADGYVTDVLGDLATAAQEIHDAVLTLVQERFNTS RTAERLHTHRNTVIRRLARADELLPRPLAENPVDVAAALQVLQWRGAR >gi|289557518|gb|ADCD01000054.1| GENE 67 72349 - 73971 1269 540 aa, chain + ## HITS:1 COG:ML0065 KEGG:ns NR:ns ## COG: ML0065 COG2072 # Protein_GI_number: 15826910 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted flavoprotein involved in K+ transport # Organism: Mycobacterium leprae # 14 503 4 493 494 542 52.0 1e-154 MPHPSMPDTESAPLGAVEQVDVLIVGAGLSGIGVGCYLTRTLPQKSFVILEGRGASGGTW DLFRYPGIRSDSDLTTFGYEFKPWREEESIADASQILDYLRETVRENDLEQHIRYHHRVV GAEWSSETARWLVTVEHAETGEQRLFSAGWLFSAGGYYDYAEGYTPHFEGRERFQGQIVH PQHWPEDLDYEGKKVVVIGSGATAVTLVPSMSDEAAHVTMLQRTPTYVMPIPREDKLAIR LRRRFGDERGHALARRKNIVKQRAIWTFAQKFPGPARKAIRRFNEQRLPAGFPVDEHFNP PYNPWDQRLCAVPDGDLFRAIRSGDASVVTDRIVTFTETGILLESGQELQADVIVTATGL NIKLFGGVDLTVDGQPVDVADSVAYRGMMLSGIPNFAMAIGYTNSSWTLKIGLVCEYFCR MLGYMDEHGHDAVWAVADPDMETRPLLDFGAGYVQRALGSMPRQGTAAPWLMSMDYFQDV KTLRRAAVVDEHLRFADAGSGATPSGPDAADGASRGEVATSAAGAAATDQLVGSGSGARA >gi|289557518|gb|ADCD01000054.1| GENE 68 73968 - 74969 819 333 aa, chain + ## HITS:1 COG:Rv2854 KEGG:ns NR:ns ## COG: Rv2854 COG2267 # Protein_GI_number: 15609991 # Func_class: I Lipid transport and metabolism # Function: Lysophospholipase # Organism: Mycobacterium tuberculosis H37Rv # 7 322 4 327 346 275 48.0 7e-74 MSAAVEWQPDILGEGYEQTVFELGPDPDGQGDVRAVLVRRVPRAGEDVRGAVLYVHGFAD YFFQTELADFFAARGFAFYALDLRKSGRARVAEQHGHYASNLRQYDLELDRAVKVITLEN PKKPLLVVAHSTGGLITPLWLDRRRRERRTGRIVGLVLNSPWLDLQGRPAMRTRAFTTGL HTLARVRPFHPIEMAAGVYGQSLHVSHGGEWDYDLELKPDAAFPVTAGWLSAVRRGHARV HRGVEVGVPTLVLHSDRSHFSRTFSEETHKADVVLDVTQIAARAPSLGKDVEVVEVPGAR HDVFLSQEAARRDAYAKVADWLGRHPMTAAERV >gi|289557518|gb|ADCD01000054.1| GENE 69 75109 - 75750 394 213 aa, chain + ## HITS:1 COG:no KEGG:Mlut_15970 NR:ns ## KEGG: Mlut_15970 # Name: not_defined # Def: formate/nitrite transporter family protein # Organism: M.luteus # Pathway: not_defined # 1 176 50 225 226 202 70.0 7e-51 MEITIGLLAYLLALHETGSHLLAGVALSVGFIALFLAHSELFTEGFFYPIMAIVDGRGTW LELLRLWGVTLATNLLGGWVTVGLIALAFPQLHPDLAETAHHFLEIGLSWQGAALALLAG TAITLMTRMQAGAEDAPTRVAAAVAGAVVLGGGSLFHSVLDSVIMFGAIHSGAAGIDYLD WLGWIWWVIPLNILGGLLLTTGPRVLRSVEARD >gi|289557518|gb|ADCD01000054.1| GENE 70 75975 - 76247 224 90 aa, chain + ## HITS:1 COG:no KEGG:Mlut_20920 NR:ns ## KEGG: Mlut_20920 # Name: not_defined # Def: transposase # Organism: M.luteus # Pathway: not_defined # 1 90 1 90 104 119 78.0 4e-26 MPKKYTPELRERAVRMVLERQVAEGGPRSHSIRAVAPQLGVGEETLRMWCNRHGHEITQA PAGEDLQQENKRLKRELAEARRANEILKAA >gi|289557518|gb|ADCD01000054.1| GENE 71 76286 - 76891 216 201 aa, chain + ## HITS:1 COG:MT0413 KEGG:ns NR:ns ## COG: MT0413 COG2801 # Protein_GI_number: 15839786 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Mycobacterium tuberculosis CDC1551 # 11 159 2 153 294 99 45.0 5e-21 MIAFIDEHRDQFGVEAICRTLRATECGFITSRGYRAAKTRPRSSRTLRDGILVEELRRIH AENYSVYGVRKMHHAMRRAGWEIGRDQVARLMKLAGVEGVRRGRTPITTRPADEPDARPD LVERCFTAQRPNQLWVADITYVRILGGFCLSRFHHRRLLPAHRGMGGLGQPSHRGAAVAR PRARPREHGSQPWPAGPGAPQ >gi|289557518|gb|ADCD01000054.1| GENE 72 76914 - 77201 112 95 aa, chain + ## HITS:1 COG:Rv2167c KEGG:ns NR:ns ## COG: Rv2167c COG2801 # Protein_GI_number: 15609304 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Mycobacterium tuberculosis H37Rv # 3 94 255 345 346 95 55.0 2e-20 MAYSDALITAGVSASVGTVGDSYDNALAETVNGLYKAELIHAKRIWESVEAVELATMGWV HWWNTQRLHEALGYRTPVEVEAAYTHDQDSAPVAS >gi|289557518|gb|ADCD01000054.1| GENE 73 77246 - 77860 132 204 aa, chain - ## HITS:1 COG:no KEGG:DR_1956 NR:ns ## KEGG: DR_1956 # Name: not_defined # Def: hypothetical protein # Organism: D.radiodurans # Pathway: not_defined # 14 195 38 220 220 77 32.0 2e-13 MTSGHWPAPTQGSPAWTRLAQWTADGRHLLHGSGTSGLLRLEPRAPLDHSPDDWSKRTAV FATEDPTWAIAYALRAPDCPQFLNACFYPGERAGAASDRRLFYSYGRRPDGTAPVQAGTV YVLNAGAFTRQPPYLDSDIGAVITECQWTSTTPADVVDAVPVTMSDLPGPLPTHNPDLIR ARMAESSTRFPWGAPEMSPPPRLA >gi|289557518|gb|ADCD01000054.1| GENE 74 78166 - 79347 1008 393 aa, chain + ## HITS:1 COG:BH1748 KEGG:ns NR:ns ## COG: BH1748 COG0502 # Protein_GI_number: 15614311 # Func_class: H Coenzyme transport and metabolism # Function: Biotin synthase and related enzymes # Organism: Bacillus halodurans # 18 334 5 320 333 316 48.0 6e-86 MTAAQDAAVVAPALDPEELVDRIEAGHRLTAAEAVAVLDAPDAETFRLVAAASRLRERHF GRTVKVNYLVSLKTGLCPEDCTYCSQRLGTEAQILKYTWLKPDEAVRQAGLGIAGGASRV CMVASGTGPTDRDVDRVTEMIGRLKDEHPQVEVCACLGKLKDGQAERLKAAGVDAYNHNL NTAESHYESICTSHTYADRVDTVERATAAGLSSCSGLIAGMGETHAQLAEAVLALRELDS DSIPVNFLMPFDGTPLAGHVQLTPLECLRILAVVRLACPDKELRIAGGREMHLRSLQAVG LQVANSIFLGDYLTSEGQDAEADLSMIADAGFTVLGAAAAPADDDGAPDGGCCGGGGCGE GGVEDASTRGGTSPSPSPAPRRRGAGTAEPANA Prediction of potential genes in microbial genomes Time: Thu May 26 07:31:22 2011 Seq name: gi|289557475|gb|ADCD01000055.1| Micrococcus luteus SK58 ctg1119142780302, whole genome shotgun sequence Length of sequence - 45684 bp Number of predicted genes - 45, with homology - 43 Number of transcription units - 24, operones - 9 average op.length - 3.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 103 - 474 115 ## COG0597 Lipoprotein signal peptidase 2 2 Tu 1 . + CDS 597 - 1925 825 ## Trad_0629 cytochrome P450 3 3 Tu 1 . - CDS 2301 - 3668 926 ## COG1541 Coenzyme F390 synthetase 4 4 Op 1 2/0.000 + CDS 3876 - 4520 288 ## COG0500 SAM-dependent methyltransferases 5 4 Op 2 . + CDS 4919 - 6172 775 ## COG3328 Transposase and inactivated derivatives 6 5 Tu 1 . + CDS 6527 - 6907 61 ## 7 6 Tu 1 . - CDS 6900 - 8486 1297 ## SCAB_16341 hypothetical protein 8 7 Op 1 . - CDS 8817 - 9614 396 ## Mlut_06510 hypothetical protein 9 7 Op 2 . - CDS 9614 - 9946 89 ## gi|281414349|ref|ZP_06246091.1| hypothetical protein MlutN2_03935 10 7 Op 3 . - CDS 9883 - 10263 209 ## Mlut_06500 hypothetical protein 11 7 Op 4 . - CDS 10268 - 12172 1313 ## Mlut_06490 type IV secretory pathway, VirD4 component 12 7 Op 5 . - CDS 12172 - 13674 1122 ## Mlut_06480 type IV secretory pathway VirB4 component-like protein 13 7 Op 6 . - CDS 13674 - 15263 1023 ## Mlut_06460 hypothetical protein 14 7 Op 7 . - CDS 15263 - 16303 593 ## Mlut_06450 hypothetical protein 15 7 Op 8 . - CDS 16336 - 16641 232 ## Mlut_06440 hypothetical protein - Term 16763 - 16809 15.1 16 8 Op 1 . - CDS 16825 - 17487 252 ## Mlut_06430 hypothetical protein 17 8 Op 2 . - CDS 17573 - 17872 65 ## Mlut_06420 hypothetical protein 18 8 Op 3 . - CDS 17869 - 18678 357 ## Mlut_06410 RNA polymerase sigma factor, sigma-70 family 19 8 Op 4 . - CDS 18714 - 19772 344 ## Mlut_06400 hypothetical protein 20 8 Op 5 . - CDS 19769 - 20902 535 ## Mlut_06390 hypothetical protein 21 8 Op 6 . - CDS 20899 - 21735 315 ## Mlut_06380 hypothetical protein 22 8 Op 7 . - CDS 21732 - 21974 130 ## Mlut_06370 hypothetical protein 23 9 Op 1 . + CDS 22087 - 22419 257 ## - TRNA 22378 - 22452 77.5 # Asn GTT 0 0 24 9 Op 2 . + CDS 22453 - 23334 471 ## Mlut_06340 peptidase propeptide domain-containing protein 25 10 Op 1 . - CDS 23416 - 25326 1596 ## COG0358 DNA primase (bacterial type) 26 10 Op 2 . - CDS 25357 - 25602 131 ## gi|289705782|ref|ZP_06502165.1| hypothetical protein HMPREF0569_0593 27 10 Op 3 . - CDS 25665 - 26696 705 ## COG0798 Arsenite efflux pump ACR3 and related permeases 28 11 Op 1 . + CDS 26750 - 28333 1042 ## COG0147 Anthranilate/para-aminobenzoate synthases component I 29 11 Op 2 . + CDS 28388 - 29290 509 ## COG0846 NAD-dependent protein deacetylases, SIR2 family - Term 29116 - 29165 -0.6 30 12 Tu 1 . - CDS 29217 - 30539 1092 ## COG0232 dGTP triphosphohydrolase 31 13 Tu 1 . - CDS 30616 - 31926 1163 ## COG0042 tRNA-dihydrouridine synthase 32 14 Tu 1 . - CDS 32046 - 32462 331 ## COG0666 FOG: Ankyrin repeat 33 15 Op 1 1/0.000 + CDS 32609 - 33631 911 ## COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases 34 15 Op 2 . + CDS 33628 - 34950 839 ## COG0477 Permeases of the major facilitator superfamily 35 16 Op 1 . - CDS 34958 - 35593 375 ## COG1230 Co/Zn/Cd efflux system component 36 16 Op 2 . - CDS 35590 - 36543 829 ## Mlut_06100 hypothetical protein 37 17 Tu 1 . - CDS 36723 - 38105 1439 ## COG0423 Glycyl-tRNA synthetase (class II) 38 18 Tu 1 . + CDS 37818 - 38489 250 ## COG2501 Uncharacterized conserved protein 39 19 Tu 1 . - CDS 38542 - 39327 647 ## Mlut_06070 predicted esterase 40 20 Tu 1 . + CDS 39315 - 40208 580 ## COG2755 Lysophospholipase L1 and related esterases + Term 40212 - 40246 2.7 41 21 Op 1 7/0.000 - CDS 40284 - 41414 905 ## COG2021 Homoserine acetyltransferase 42 21 Op 2 . - CDS 41411 - 42778 1306 ## COG2873 O-acetylhomoserine sulfhydrylase 43 22 Tu 1 . + CDS 43203 - 43838 651 ## Mlut_06030 hypothetical protein 44 23 Tu 1 . - CDS 43857 - 44753 813 ## COG1266 Predicted metal-dependent membrane protease 45 24 Tu 1 . + CDS 45077 - 45683 240 ## Mlut_06010 hypothetical protein Predicted protein(s) >gi|289557475|gb|ADCD01000055.1| GENE 1 103 - 474 115 123 aa, chain + ## HITS:1 COG:MT1591 KEGG:ns NR:ns ## COG: MT1591 COG0597 # Protein_GI_number: 15841006 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Lipoprotein signal peptidase # Organism: Mycobacterium tuberculosis CDC1551 # 1 118 67 184 202 77 40.0 4e-15 MGDLLGLQLAYNPGAAFSLGATSTWIFTVISAVAVAAAIWFSLRVRTVSWALLVGCLGGA VTSHLGDRLLRPPSFGQGHVVDFLAYGNWFIGNVADIFIVGGAAAAVLLTATSPDRDTAD TPQ >gi|289557475|gb|ADCD01000055.1| GENE 2 597 - 1925 825 442 aa, chain + ## HITS:1 COG:no KEGG:Trad_0629 NR:ns ## KEGG: Trad_0629 # Name: not_defined # Def: cytochrome P450 # Organism: T.radiovictrix # Pathway: not_defined # 9 437 2 437 441 383 48.0 1e-105 MPGATPIGDEAEVPTLGAVDHLRVLTRVLLGPVVKGPIVRRPAAVGLAERLDADAAGVAE MQRLRSRYGAGPVQLRIPGRRIALLLDPADVRRVLNDSPTPFSPATLEKRGALNHFEPAG SLVSTPQQRLSRRPFNEQILETPRPVHSHAEAMKAVITEEVSTLGGHVDFTGTLDWESFA VMWARMVRRIVLGASARDDDQVTDDLRRLRARGNFSYLMPQNRRLRERFLRRLQHYIELA EPGSLAALVAQTPAPDEAVPHQQVPQWLFAFDAEAWATFRALALLTNHPGATGTARSEVA HAPDLPFLRATVLESLRLWPTTPLILRDSTATTHWRNGTLPPDTALVIYAPFFHRDDQTL PQAHRFSPELWLQERDDNAWPLVPFSAGPGMCPGRNVVLLTSSLVLGELLRQHDFTAQEP LDTGQLPGTLSPFSSHFTVRHD >gi|289557475|gb|ADCD01000055.1| GENE 3 2301 - 3668 926 455 aa, chain - ## HITS:1 COG:YPO1981 KEGG:ns NR:ns ## COG: YPO1981 COG1541 # Protein_GI_number: 16122223 # Func_class: H Coenzyme transport and metabolism # Function: Coenzyme F390 synthetase # Organism: Yersinia pestis # 6 404 7 377 428 112 28.0 1e-24 MTESRLWLLCDARAAHRQGRAGLDRRRHERLVEMVSFARARSPFYRRLYQHLPEQLTDPV LLPVTGKAELMRHFDDWVTDRAVTLSAARAFVEDPALVGEKFLGRYTVGTTSGTTGTRGI FLWDERSLAVTTALLARLLGTWLTPADVLRMLARGGRIAMVNATGGHYASAAAAAALRKN RWGSDRIGVFGVHTPMAQLVAGLNDFRPAILAPYATMGALLAAEQRAGRLHINPALVVLS AEALPEGEYDRIAATFNAKVRQGYAATECPFLTYSCQHGWLHVNSDWVLLESVDADHRPV PPGQPSHTTLLSNLANKVQPILRYDLGDAVFVRPDPCPCGDPLPAIRVRGRTADLLTFHT PAGEPVVLTSLTVTAWVDRVPGVELVQLVHTAPTHLEVRMQFSAGTDPERLWQAVHTEIR RLLVDHGLGHVTVARGDGPPQPTPGGKFRAVIPLP >gi|289557475|gb|ADCD01000055.1| GENE 4 3876 - 4520 288 214 aa, chain + ## HITS:1 COG:Rv3832c KEGG:ns NR:ns ## COG: Rv3832c COG0500 # Protein_GI_number: 15610968 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Mycobacterium tuberculosis H37Rv # 33 213 11 187 191 83 35.0 3e-16 MGRPDSVGGPGPADRPCWRLPMPKMSGIETAFCRSALWGRFARDIIVPWSLGGQDLGGDV LELGAGSGQMAAALLQRSPGMRLTLTDIDERMVATARRRFPTSPRLTVQQADSTALPFAE SSFDVVLSFLMLHHVVNWKAAVAEAARVLKPGGMLIGYDLTASPTATLLHLVDRSPHQLV APADLAATARHVGLDVSIRTGWAGHVMRFLAHKH >gi|289557475|gb|ADCD01000055.1| GENE 5 4919 - 6172 775 417 aa, chain + ## HITS:1 COG:MT2587 KEGG:ns NR:ns ## COG: MT2587 COG3328 # Protein_GI_number: 15842041 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Mycobacterium tuberculosis CDC1551 # 1 413 22 434 436 531 65.0 1e-150 MTAPHIVDPAGLLGEALSEASPDMMRHLLQTMINTLLCADADAVVGAEWGKPSRDRTAQR NGYRHRDLDTRVGTVDVAIPKLRSGTYFPEWLLERRKRAESALITVVADCYLAGVSTRRM DKLVKTLGINALSKSQVSRMAADLDEQVEAFRHRPLGEAGPFTFVAADALTMKVREGGRV VNAVVLIATGVNGDGHREVLGLRVATSETGAAWNEFFADLVARGLAGVRLVTSDAHPGLK DAIAANLPGAVWQRCRTHYAANLMGITPKSMWPAVKAMLHSVYDQPDAASVNAQFDRLLD YVSEKLPVVAEHLDAARADILAFTTFPKDVWTQIWSNNPAERLNREIRRRTDAAGIFPNR AAIVRLVGAVLAEQTDEWAEGRRYLGLEVLARCRLTTVSNTGSEVNPDTAPALEFSA >gi|289557475|gb|ADCD01000055.1| GENE 6 6527 - 6907 61 126 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MQRIAAQKPGWRRARGADPTPWRDDPPRPRARGTQTDPHIGASTTRADAVVPTISLRLGR PLKTDKGAPSSSRKLAPSTRQFCHLDSGAPSAPAPAPSPDAELTTMQLWYPTPRTYGFDY WLFSAS >gi|289557475|gb|ADCD01000055.1| GENE 7 6900 - 8486 1297 528 aa, chain - ## HITS:1 COG:no KEGG:SCAB_16341 NR:ns ## KEGG: SCAB_16341 # Name: not_defined # Def: hypothetical protein # Organism: S.scabiei # Pathway: not_defined # 45 519 58 539 545 112 26.0 3e-23 MSILYRAVWSDASRPDPISLVEDLKICVARWTQETEEPAPLVEGHSELDVSQGRHRRISV RVVGPNAFEATVIDQVAGDPTEWSTVIRVVADDEGVHTLVELSMSSDDLARRVSVGRPKV VHDLLSAVDKPRLGGSQLQVEPLSLPANAIDILAEMLSNPSRTLPIIVCTEPSGDHDGDW LRAAKRIAARAEGVAIVLTLDLAAVSEFRREFGSLAVWDGGIRVYSPGVVTRDAEGWRHR YYQRSRLEDRPRFTVDRIVYSVAQLSTRRRIPNVFHIFGGQSGLPSDALDGMIPVKDLIK AREDWDFEREVALDEQSSVERELASANGHLSRLKEALIERGLASLLWGAQHEDVASVPDL VQDTSEAVLAAQMYLADWLVLPDSAVRHLEDIDTAPEAYNWGNKAWRGFRALAAYAQDRA SGWDKGGFWEWCASGPVLGWPATSKKLSMTESEGVQTSGKFKGTRDFKVDPAVDSSGEIT MLAHLKISEGGGNLAPRVYFYDDTNGATKKVHIGLVGPHYLVPNKSTN >gi|289557475|gb|ADCD01000055.1| GENE 8 8817 - 9614 396 265 aa, chain - ## HITS:1 COG:no KEGG:Mlut_06510 NR:ns ## KEGG: Mlut_06510 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 264 1 264 282 402 81.0 1e-110 MTSPWVEDDELTDWEAPAAADDDGQTGTPLPYVDPEIAAELAGEGPPVWMGTRWREIEAE HQWEAWNTLRRWVDWFVAEYRLVTSVVPPCWYKHSDLTAELYAAMCMEYKVWEEQAPGLG PMMMWHPHVEMLTARLRRMVDEAGCAKIGQHKEPEAYGDRPAFNLDYDEDDFTAWAATTC EQHALERPEAGVKYVRARVFNGDGEEIALSNPVGLASRRTSTGVTAELMMTSSTPLAPGL RLTVPSATPGLEVGWQTSVNGHDWE >gi|289557475|gb|ADCD01000055.1| GENE 9 9614 - 9946 89 110 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|281414349|ref|ZP_06246091.1| ## NR: gi|281414349|ref|ZP_06246091.1| hypothetical protein MlutN2_03935 [Micrococcus luteus NCTC 2665] # 21 110 1 90 90 146 97.0 4e-34 MGPQAGDDRDRGEDGPAESGMSDDGGARCHVCQRTVSTRWHCTDGRHLDRAECRAAGGIG VWLCGTCEDAAHRYMCSTGAGGREAVEELFARLERLLGGPARRYTREGRN >gi|289557475|gb|ADCD01000055.1| GENE 10 9883 - 10263 209 126 aa, chain - ## HITS:1 COG:no KEGG:Mlut_06500 NR:ns ## KEGG: Mlut_06500 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 126 1 126 126 224 94.0 1e-57 MGRFGLHRTGSAEYKRYLRSQAWGYRRVRWFADCRQAGQEPACQVCGITLTRAGTLDLHH VSYKGVGQDEEGRWQAREAHNDLMPLCRDHHQRLHQIMDGKKEFFGWDRRRATIVIVARM VRQSQA >gi|289557475|gb|ADCD01000055.1| GENE 11 10268 - 12172 1313 634 aa, chain - ## HITS:1 COG:no KEGG:Mlut_06490 NR:ns ## KEGG: Mlut_06490 # Name: not_defined # Def: type IV secretory pathway, VirD4 component # Organism: M.luteus # Pathway: not_defined # 1 634 1 634 634 1173 97.0 0 MRRERANTSVLEGDNPAETALIWLIGPAVLLYGAYLLAGFLAGRIHCGAPTKPDTLFAPL SFLVGEHDPAAFGATAQGCTATTDGVIGWLIGVGVLALVLIGVAVTAWSRYQQSDKKFIK ELREREGLARSAEITKTVGRKPVLSRVKKVRPSIKKPAITDGAMRLGKAEGVDVFASYEE SVVLIGPPRSGKGVHLLIGAILDAPGPVITTSSRADNLGATAELRKKKGPVALFDPQGLT GQPSTLKWSPITGCEEPRVANQRAASLIGASGLGSSSSNAEWQAPAITIMECLLHAAALG ERTVDDLMRWGNNPAEAKEAVKILTEHPKAALNWNLVLKGIIEGDPKLLQSKWFGVEGAV KGLSVPEVRDVLRPNRFEETLDIDKFLTECGTLYIVGTKTGGSSAGPFLIAMMDAITERA RELAAKSPGNRLDPPLSLVLDEIANISGAWPGLTQLMADGGGVGISPFAVFQSMAQARNE WGEQQAQALFDAATVKVQLGGASNVSDLEQFAKLAGQRKIMRTSKSRGKDHTSVSEQIHD TEVVSVAELRRLPFGWGVLLNRNGRPILMQMTRWWDRKDGKQIKEAAGRYSKALLAELES KDPAPSTPTDADRAEDSVAALDPVPETAPAIPVR >gi|289557475|gb|ADCD01000055.1| GENE 12 12172 - 13674 1122 500 aa, chain - ## HITS:1 COG:no KEGG:Mlut_06480 NR:ns ## KEGG: Mlut_06480 # Name: not_defined # Def: type IV secretory pathway VirB4 component-like protein # Organism: M.luteus # Pathway: not_defined # 1 500 1 500 500 895 98.0 0 MREEPKVDLFQIIEPGKDEAREAKRTARELERGQRALRKAMAAQAKEVRFPQPQWGKAGP RGARQLRGMRTLAPRPVRTTTHTASTAYPFVAGPGLGARGLMIGKDMHGGGAFCFDPWAL YEAGIISGMSMMLFGQVGTGKSSLAKSLAVRQVLAGRKLSVASDKKGEWTRVVKGLGGSV IQVGPGLDTRLNPLDPGTRPSTDVQGEPMTDRAWASMVRTRRMSILVALVKILTDRDMTS PEHHVLSAGLDAAVAVADAKGRPPIIPDVIRALDAARTDPDAMKAEAASVTMMTLGRVSS GDLAGMFDGETTVVLDDQACATSIDTSALLGASPEAVRVVNACAGAWTEAMVTTRDGGQR IVIYEEGWDNISSEADLRRMVEQWKLSRAYGIFNVLVLHKIADLDMAGDQNSKMAAMARS LLADADVKVIYRQDRSALKITTSEMELSDRERSLVRSLPKGTGLWRLGDSSFEVQNVLTR AELPLFDTDERMDKAKEAVA >gi|289557475|gb|ADCD01000055.1| GENE 13 13674 - 15263 1023 529 aa, chain - ## HITS:1 COG:no KEGG:Mlut_06460 NR:ns ## KEGG: Mlut_06460 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 529 1 529 529 933 97.0 0 MATMIQESMDSEYDDVRFPQERTQGLILGLTLEQVIVVLAGVLIGMAFILRGGPAMFVGI GLMAVIGAFGATRFRGRSLPGWVWVAAQYLRRGATEQLEYRQGMVPAHVLELVDGEPQAP VSEAGPQAQRDAKGRIKPGEPARFRLPGVAGELMVYAMPNGAGFVWDPRAREAVVCAKVM TTRGFDLESFDAQEERSLSWGSSLAALSRLPGVVRIQASDQTTLISGAAVEDFYESKQEG AGRSGASIDPFLDQAFRELMKEAQSMPVHEQWLTLVVSPSKISSQVKALGGGTPALMEHM LKLMTTVESTLPRSGTQVTAWHSPRTLAGLSRSAFDPDASVMISTTKADGKTAGTAPSSA GPMAVEVHAGHMVTDGNYHRTYKVSELPQNLARLGFLDELVFAGDFRHTVSVFMAPVERG AAVRSVQRRKTDWHTNSRLMNKLGRIGSLEHDQSLEDVEREEAELRRRHTGVEVVVLVTV TGASRSELESAAAEVLASGITAECELRPVWMEQDAAFVAGALPFGRMKL >gi|289557475|gb|ADCD01000055.1| GENE 14 15263 - 16303 593 346 aa, chain - ## HITS:1 COG:no KEGG:Mlut_06450 NR:ns ## KEGG: Mlut_06450 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 346 1 346 346 509 96.0 1e-143 MWEKDFEEFVRGSILGLAKAAAGLIEQAFSVGALTPEWWVTVVGGQVTTTVAGGESTVID HPGMLNIIVLAMIPLLMIFVAIQVALSAVRGSTAGMLRAFLAAVFSVPATYVVVGLVWMA MGATQQLTLWILQVGSGGTDGQDEAVAGVLGLFGLTYDAANDKILLDENFSQWEMASENA ENGMILVAWIIALVIFFACFVLMAMMIFRLVLILILASFAAPAIFSLALEPAKALAGRWL SMMLGLIMAGPLAAAVVRLGMAMAALSTDWVQTVAGMVLVFVAAAMPIFMLAITAWLAGG AGQAEQAGVMAASQAGRGAMNSMRGVSARAGRMRQRAGAMVMRGGR >gi|289557475|gb|ADCD01000055.1| GENE 15 16336 - 16641 232 101 aa, chain - ## HITS:1 COG:no KEGG:Mlut_06440 NR:ns ## KEGG: Mlut_06440 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 101 1 101 101 131 93.0 7e-30 MSNLIHAATTVAAGVPDIAPRFDGPWMPTIQNVTGLALGTFLVILIVAVGIGVVVWIFGK LSSSGRAQDVGIAFVVWGVLAAALIAGAAGLIGWGAGLPLF >gi|289557475|gb|ADCD01000055.1| GENE 16 16825 - 17487 252 220 aa, chain - ## HITS:1 COG:no KEGG:Mlut_06430 NR:ns ## KEGG: Mlut_06430 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 220 1 220 220 374 97.0 1e-102 MLNGINPDGLSGWSQISGWVAGTALVVLILAVGAGVVLAVWGRALFSPGGMRKGWTMVGL AAVGATVLGAGTAGASWGAGLGTSELMPAGARPQSVAIEKNAPKQTCNRQAVRDFDKEEP SPDRAERERVISTLLGGQPALDGYEWGKEPTGTESSYTVVTSVKWYATGEVNGSGEPDCS AQNEATAECSPVEVHVARQSLTNGAQTGRTLTLTRGQNCS >gi|289557475|gb|ADCD01000055.1| GENE 17 17573 - 17872 65 99 aa, chain - ## HITS:1 COG:no KEGG:Mlut_06420 NR:ns ## KEGG: Mlut_06420 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 99 1 99 99 120 88.0 2e-26 MSEQSEFEQSHDGPEGQEPRVVYVERDRGLFASVRRLRQRTGEAGRRWVAESVDAPLPTS WQERVPDRWDSARGRWVIAAVALAVLVMWVLVVVQAMAG >gi|289557475|gb|ADCD01000055.1| GENE 18 17869 - 18678 357 269 aa, chain - ## HITS:1 COG:no KEGG:Mlut_06410 NR:ns ## KEGG: Mlut_06410 # Name: not_defined # Def: RNA polymerase sigma factor, sigma-70 family # Organism: M.luteus # Pathway: not_defined # 1 269 14 282 282 389 100.0 1e-107 MVLVTGDELAEAVASVRGTVVAVLGPSGNGDVVEDVLQSTWESAWHSRERFDPDRGSLRT WVGTIARNRAVDHLRAVGRSRAGQEALEASAVAREKTAVSMVMEDPAEAVVEALAAHREV AEVMRVVESVMESSEMTARALAVVLAFGDDVVAASEAMGVSVTALRQARRELVRCARVVR AAQEVARSGQAVTMRVLISCLPDDGDAGDWARQVALACAQAGGRMEAVTVEDVMQATGFS HSTSRQYLAETRHLLRVATTVIRNERAEK >gi|289557475|gb|ADCD01000055.1| GENE 19 18714 - 19772 344 352 aa, chain - ## HITS:1 COG:no KEGG:Mlut_06400 NR:ns ## KEGG: Mlut_06400 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 352 1 352 352 578 92.0 1e-164 MSIDAMKWAQKVAETGKLNTGQAFVLLLLGDHADESWSCYPSQELLAQRSAQTVRSVERH IARLRDLGLVETESRYGDGRGRIGLRYYLREEALNGLVQDPEARMNTRPDNLSGKSETRM NTRPDNLSGKSETRMNTRPDNLSGKSETRMNTRPDNLSGESTHPTISADSPDNFDFADYK DRTRTNPQEPSSVRPSVRQSGAVRAKTTTDDGRRTDQAIDGGEGVGLVHRGVVLADLVQR VPAAADLGDGQLRSIVDVVLARASGPVRKPTAFVARSLASEFEELVAVTRPRPVAVAQAP AASGQVRELRTSEPCQDPDVHVPAYGQAVLSDCPHCRLERRAMPRALMEAVE >gi|289557475|gb|ADCD01000055.1| GENE 20 19769 - 20902 535 377 aa, chain - ## HITS:1 COG:no KEGG:Mlut_06390 NR:ns ## KEGG: Mlut_06390 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 377 1 383 383 497 92.0 1e-139 MSAQQMWEARTSGPKSAEAPASVQAVGASENAQSETVHIPKNTLVEHSKDNTGTRPTGSG IRSLPRRVNPNDGRFIRAVVAGTAVAGLVAFSISFAALYEVAAWLGLPPFMHWAVPVFID LAILVYAGSVLVHESRGESARASWWALGAFTGLSMIANGAHAWSAENASVWQSVVGALIA VMVPVAVFVATDQLARVAVENPDSRRAERASQVSEEAEQLKAQAELDRQRAELEAELAAS RRQIEAQRREAEREAEVAEARHRQELERMERQAELEAEREARAVPQAVVEESQGTEGVEG VEAVPSSEPVVAEPRTVEKASGADITAWIVARAQEGQVPSAAEVAEKFGCSERTGRRRLA DARETHAEAFGTGEEQA >gi|289557475|gb|ADCD01000055.1| GENE 21 20899 - 21735 315 278 aa, chain - ## HITS:1 COG:no KEGG:Mlut_06380 NR:ns ## KEGG: Mlut_06380 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 278 1 278 278 496 96.0 1e-139 MNGYSLQLAYTPEAAREVTDQIKTGLESVYHLIRSAYRGRAWEVLGYRSWDEYVTREFGN LHLRPPLEERQDIVLSLREVGMSTRAIASATQISEATVRRELKHAGASKDAPGRAPASVV GVDGKTYEATRPARIANLEPSTGVRGGQSDVDAVLDMPAEDFGIEPLDLVRHDEEQKCRA RRVLTAFNGSGAAAVPALINAATPVASLVSPATGKALVEDEDLHGVVWDSVRCVRALAHV IRSVGHVEGESKAEIRSTLRDAVDDLDEVLKKIEEGTR >gi|289557475|gb|ADCD01000055.1| GENE 22 21732 - 21974 130 80 aa, chain - ## HITS:1 COG:no KEGG:Mlut_06370 NR:ns ## KEGG: Mlut_06370 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 41 80 1 40 40 67 100.0 2e-10 MSNHTRCVRSNLAAEISRRDLTQARAAALAGLTPDGLSKRMSGQVEFRLGELLELARVLG VPFATLVAGIDAADEQLAEA >gi|289557475|gb|ADCD01000055.1| GENE 23 22087 - 22419 257 110 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTNSNDESGSDFNSMVAAEVRAWLARSGKRQADLAAALGVSQSGISHRLRARVAFTLEEL ATIAEVFDITLAELLGPVILQARRSPRTDMVGAGASARLPRLDSNQQPFD >gi|289557475|gb|ADCD01000055.1| GENE 24 22453 - 23334 471 293 aa, chain + ## HITS:1 COG:no KEGG:Mlut_06340 NR:ns ## KEGG: Mlut_06340 # Name: not_defined # Def: peptidase propeptide domain-containing protein # Organism: M.luteus # Pathway: not_defined # 70 292 1 220 221 217 85.0 3e-55 MCREPPEPFGQRMELYQSHPPARHPAAGRRRRPARPRGPGALARHGSGGPTVRGHPQNHQ ERIRRRDVTMTITTLTRKTALTGTGVLAAVALAACGTTSDNGDEGSTSPGVDASSSVTST PATDGASGSASSSASTESSASASSTAAAAGSGSATGPADVPAYAVIDAVLEKYADGIVVA VDADDDDTTWEADVVVGEEVKELDVTADGDITETDRESDPEDVQKAKEAEVTAQQALDTA REGRDGVTLDEMDLDDDNGTLQWEVGFDREDGSDGPEVEIDATSGEVLTVDER >gi|289557475|gb|ADCD01000055.1| GENE 25 23416 - 25326 1596 636 aa, chain - ## HITS:1 COG:Cgl2216 KEGG:ns NR:ns ## COG: Cgl2216 COG0358 # Protein_GI_number: 19553466 # Func_class: L Replication, recombination and repair # Function: DNA primase (bacterial type) # Organism: Corynebacterium glutamicum # 3 634 6 628 633 542 47.0 1e-154 MAGLIVRKDIDLVRERTDLKAVVEEFVTLRSAGVGSFKGLCPFHDERTPSFHVRPGVGTY HCFGCGAHGDVISFLMELEHTTFMETVERLASRVGVELHYEDGGTGPDKAETGRRRRLFE ANKVADEFFRRALGSPEAQAARDFLTQRGFTQEHAAQFGLGYAPQGWSHLLDHLRQRGFR DEELRASGLVSEGQRGLYDRFRGRLLWPIRDMTGATIGFGARKLYDDDPGPKYLNTPETP LYKKSQVLYGIDLAKRTIAKERQLVLVEGYTDVMAAHLAGVGTAVATCGTAFGADHIKVA RRLISDDGTGGEVIFTFDGDEAGQKAALKAFDEDHRFLAKTFVAVEPSGMDPCDLRMQKG DEAVRALIASRRPLFEFAIRAGLKDYDLNTVEGRAGALRHAAPIVAGIKDAVLRPGYERE LAGWLGLDPNAVHRAVAAAGRAPRRGPEPEARPTPASDGQAVGPQGRHGEAAAPAPRIVV PVDPRDPVARRERESLEVVLQHPTLLSAEQWTALYAARFTVPQYAAVHQGVKVAGSAGAT PQRWVDAVRDAVPQEVAGVVSELAVRDLPARTPEDVDRYCRDIMNRLFALQIVHRKEELL GRLQRLGPEGDPAEFTRLNSELMELEARRRALRADD >gi|289557475|gb|ADCD01000055.1| GENE 26 25357 - 25602 131 81 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|289705782|ref|ZP_06502165.1| ## NR: gi|289705782|ref|ZP_06502165.1| hypothetical protein HMPREF0569_0593 [Micrococcus luteus SK58] # 1 81 4 84 84 87 100.0 2e-16 MSLSFVSSARRRHGGLASAALFHPLVEAATGALPVIDPATGRPASEGADAARTEAPRAAG TGPAQAAAETEPSTEAGSARG >gi|289557475|gb|ADCD01000055.1| GENE 27 25665 - 26696 705 343 aa, chain - ## HITS:1 COG:Cgl1435 KEGG:ns NR:ns ## COG: Cgl1435 COG0798 # Protein_GI_number: 19552685 # Func_class: P Inorganic ion transport and metabolism # Function: Arsenite efflux pump ACR3 and related permeases # Organism: Corynebacterium glutamicum # 8 324 2 314 332 203 50.0 4e-52 MPSSPPRRALVAALERHQVALYLAGIAAGAVVGWAVPGADAWAVLVEPVLALLLLATFLA VPFAALGAGLRDGRFLGALLVLNFVVVPAVVFGLSRFVAHDDALLVGVLLVMLAPCVDYV IAFTALAGGAAERLLAAAPLLMLVQLVVLPVLLRVVAGEAAVAAVDAGPFVRALVMLILV PLALAALLQWGAVRGRGGVRDTAAGVVRGFTAAMVPLMVVTLFTVVASQIRGVGERLPAL AAVVPLFVAFVVVMVALGVVAARWARLDVPAGRALVFSGVTRNSLVVLPLALALPASLDP APLVVVTQTLVELGAMVSLVRLVPRLLPLHGQSAGAGEGRTVT >gi|289557475|gb|ADCD01000055.1| GENE 28 26750 - 28333 1042 527 aa, chain + ## HITS:1 COG:alr3443_2 KEGG:ns NR:ns ## COG: alr3443_2 COG0147 # Protein_GI_number: 17230935 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Anthranilate/para-aminobenzoate synthases component I # Organism: Nostoc sp. PCC 7120 # 42 511 45 490 514 260 36.0 5e-69 MPTAPAPPEAAATPLHVAVRTLDAAALAAAGHTAASAVAAVYTHAVMRGAASFWLDSALP DPAEARWSVAGDGLDVLGEEQGRVPSPGPRLVRHDDPADPDRAWADLAAAAAPRPVVGGE GLPLRGGLVGWLGYELGLADLGVTPPSRRPEDPAALPAQFWVRPSRYVVADHAAGVLHCC VVSLDPTAAEAGADRWAADVRRALAAARRDLETAAGDAVVPPPENAGPEPRADEEAPGTW REDRAAYAEQIARCRAALHAGDSYELCLTTRFDADPGLRVDPLVLFHELAAHQPAPYAAL LEHGTGSRRWAVVSASPERFLAGREGRYSTKPIKGTAARLPDPAADAEAARALAADPKTR AENLMIVDLLRNDLSRVCAPGSVEVPSLMAVESYATVHQLVSTVTGTARAGVDPVDVVRS LFPGGSMTGAPKRRSVELLAAWEASPRGVYSGALGMLGADGTTSLSVVIRTAVLAGGRWS VGAGGAIVADSDPDAEHDEVLLKARGLRRALARAAGTGLPTTAPDVA >gi|289557475|gb|ADCD01000055.1| GENE 29 28388 - 29290 509 300 aa, chain + ## HITS:1 COG:MT1185 KEGG:ns NR:ns ## COG: MT1185 COG0846 # Protein_GI_number: 15840591 # Func_class: K Transcription # Function: NAD-dependent protein deacetylases, SIR2 family # Organism: Mycobacterium tuberculosis CDC1551 # 32 274 2 230 237 210 52.0 3e-54 MADPHPVLAASAPDLDPDALDAVRGLVAAAERPVVLSGAGMSAESGIPTFRDAQTGLWER FSAEELATEEAFLAEPALVWSWYRWRARMVRARRPNPGHDAVATWQRRTPGLEVVTQNVD DLHERAGARVLAHLHGSLFEHRCADCGAPADVDPGTPADEATAGSEADLEAMLREAPPAC TVCGDGLIRPGIVWFGEMLPAEPWDRAFAALEDCDLCVVVGTSGIVQPAASLPFVALGAG APVVEINPDETELSGAITHVLRGPAGAVLPALLDPPVRARRAGTPRPAPGCDATRRRSNR >gi|289557475|gb|ADCD01000055.1| GENE 30 29217 - 30539 1092 440 aa, chain - ## HITS:1 COG:ML0831 KEGG:ns NR:ns ## COG: ML0831 COG0232 # Protein_GI_number: 15827365 # Func_class: F Nucleotide transport and metabolism # Function: dGTP triphosphohydrolase # Organism: Mycobacterium leprae # 21 419 13 416 429 313 46.0 5e-85 MLFGPEGRPPYAGRAVQTPGYTPWDRERWLPEPPKSSYRSDFERDRARVLHSAGLRRLGA KTQVVAPDADDFARTRLTHSLEVAQVGRELGRSLGCDPDLVDTACLSHDLGHPPFGHNGE KALDVASEDVGGFEGNAQTLRLLARLEQKKLFADGSSAGLNLTRAALDAACKYPWTREDA PLRPDGTRSRKFGVYEDDLPVFRWFRAGVPGRRTSMEAQVMDLADDISYSVHDVEDGVVN AVFQLKWLAIPEHRERVVETTRQWYLPHTDPAEVDAALARLEDTDVWVSEMDGSRRALAA MKDMTSQLIGRFCSAAFDATRQVFGNEPLTRHGADVVVPEETETEIAVMKGIAAAYVMTA EQRQPLYARQREVLAELVALLDATGDRYLEPMFAFDWAQAPDDAARRRVVIDQIASLTDS TAVEWHHTLVQGAEFRRVWL >gi|289557475|gb|ADCD01000055.1| GENE 31 30616 - 31926 1163 436 aa, chain - ## HITS:1 COG:MT0845 KEGG:ns NR:ns ## COG: MT0845 COG0042 # Protein_GI_number: 15840236 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA-dihydrouridine synthase # Organism: Mycobacterium tuberculosis CDC1551 # 58 413 11 370 389 377 58.0 1e-104 MTSSHTLPAAAVTDADDVADLHAAHYAKSAGAGRRITDDDQLHEARHPAPTTDRLALPPL RLGPLTIDVPVVLAPMAGITNTAFRRLCREYGGGLYVNEMVTARALVERKPESMRIIQHD PDEVPRSVQLYSVDPVTTGAAVRMLVEEDRCDHIDMNFGCPVPKVTRRGGGSALPWKSEL FASIVKAAVTEAAKRDIPVTVKMRRGIDEDHLTFLDAGRTARDLGVAAVALHGRTTRQFY SGTAVWDDIARLREALPDIPVLGNGDIWSAEDAIAMVEQTGVDGVVIGRGCQGRPWLFGD LQAAFEGRQDRFQPTLGMVADTLYRHAELLVGTFGGDELKALRDIRKHVAWYFKGYPVGS EIRTALSTVPDLATMREILARVDRDQPYPGEAAEGPRGRSGAPKRPHLPDGWLDSRELNA EQQAMIQAAELDVSGG >gi|289557475|gb|ADCD01000055.1| GENE 32 32046 - 32462 331 138 aa, chain - ## HITS:1 COG:Cgl2294 KEGG:ns NR:ns ## COG: Cgl2294 COG0666 # Protein_GI_number: 19553544 # Func_class: R General function prediction only # Function: FOG: Ankyrin repeat # Organism: Corynebacterium glutamicum # 11 125 12 129 133 92 48.0 1e-19 MSEQWSEKDIELANRLFDMARDGDTAQLKAYLDAGVSTRLRNHAGDSFLTLAAYHEHPDT VAMLIEAGAEIEHANDRGQRALTCATFKRDVASMRHLLAAGADPDAGTPSARQTAQMFAG ADLLAVLDGGDAAPASEA >gi|289557475|gb|ADCD01000055.1| GENE 33 32609 - 33631 911 340 aa, chain + ## HITS:1 COG:mll2315 KEGG:ns NR:ns ## COG: mll2315 COG2141 # Protein_GI_number: 13472119 # Func_class: C Energy production and conversion # Function: Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases # Organism: Mesorhizobium loti # 4 338 2 339 340 290 47.0 3e-78 MTRKHLGFLNFGHWIQRPGTAPDARQALDDVVAMAVAAEDAGLDGAWLRVHHFQRMFSSP FPILAAMAARTERISLGTGVIDLRYENPLYMAEAAATTDLISGGRLELGVSRGSPEAALD GQAQFGYALAEGQTWADVTRERGRRFLSAVRGEGIAAPDLTSGWAHSSQPLRIEPHSPGL ADRIWWGSGSTPSAVEAGRDGYHMLSSTLLLQDDGRPFHVQQADQIARYREAFAAAGHAG PGRTAVTRSAFVIQDREDELYFGRERASRDSSGMLEGGAARSGPTYAGSAEEVAEKLAAD DAVAAADWVLFANPNQLGVEYNAKIFAGWAEVWRLLGWDA >gi|289557475|gb|ADCD01000055.1| GENE 34 33628 - 34950 839 440 aa, chain + ## HITS:1 COG:PA3532 KEGG:ns NR:ns ## COG: PA3532 COG0477 # Protein_GI_number: 15598728 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Pseudomonas aeruginosa # 19 415 7 355 383 75 27.0 3e-13 MSEAAPHLPSADDGVARARRARWAVTAAFATNGALLGALIPHYPEAKAAFGLDPAAFGLF VIALAVGGMLAGPLPAPILRRFGARRVMLAGSVAIALLTTAAGLVLDVTGAGAGAGHGAG TAAGWLLWVFAGLVLASGVFDAVVDTAQNAQGLQVQTRLARPVLTTMHAGWSLGAAAGAG LGAAVISVGGPAALHLGLNGAVCVAVLLGVRRLFLAEAPTDSASARDAADQPSAPSETSA PPAPAARSGVLPPRAALAALVPAVVIAMAGFGVEEFGNAWATLFLISERGLDPAAAVLGA STLLGAQFVGRLAGDRTLAVLGRRGALTAGLGAVVVGLGLALAPLPESVAVPAAFAGLAL AGLGCAVVVPVAYALGDEAPGLKPQTGLAVTSWCMRLAGVGLSPAVGALAGAVGLAPALT VFLGLAVVGAVLAARLPAAP >gi|289557475|gb|ADCD01000055.1| GENE 35 34958 - 35593 375 211 aa, chain - ## HITS:1 COG:Cgl2020 KEGG:ns NR:ns ## COG: Cgl2020 COG1230 # Protein_GI_number: 19553270 # Func_class: P Inorganic ion transport and metabolism # Function: Co/Zn/Cd efflux system component # Organism: Corynebacterium glutamicum # 12 210 7 205 205 147 47.0 1e-35 MNRAAAADRRRARALRGTVLAVALLNGAYLVVEIILALGIGSVALVADSVDFFEDFAVNL LIFVALGWTAARQAVIGKVMAGIIVLPAVAALVMAATKVGDPEPPAAGVLLGVAVGSILV NLVCVALLSRVRTDGGSLTRAAWLAARNDLVAGAMLIALSGITVLTASGWADIIVGVLLV LLNGSAAKEIWEAATEEHLAAQALAGEIDDD >gi|289557475|gb|ADCD01000055.1| GENE 36 35590 - 36543 829 317 aa, chain - ## HITS:1 COG:no KEGG:Mlut_06100 NR:ns ## KEGG: Mlut_06100 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 317 62 378 378 483 97.0 1e-135 MLAEDAERPWRRALVAEAAGVPVAAGVVYASSVHPRRLWLYVETAAAERRRGIGRALVAA LRGLAAQAHAAGAIPTTALKARFARDALVPGVAGADPQTEAEGATGRPPVDTDAVRSQTA ALAAGTEAFLVAEGFTPVQRSRRVAIAPGAIGLPDVRGEEHPDGVVLEEASTGSVELTQA VTAFYDAVHAWDPSTLSVGAAQQLLLGPATGAAGAVVLRDAPKAEGGRIRAFAVSYTPER QDAPADVLVGWDPELGEEDALQAVADLLALLVAQYPVQVEVDEAMTPLERIVDGLIGGNA ARTLVDTYVFVDDAPGA >gi|289557475|gb|ADCD01000055.1| GENE 37 36723 - 38105 1439 460 aa, chain - ## HITS:1 COG:MT2426 KEGG:ns NR:ns ## COG: MT2426 COG0423 # Protein_GI_number: 15841869 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glycyl-tRNA synthetase (class II) # Organism: Mycobacterium tuberculosis CDC1551 # 7 458 9 460 463 640 65.0 0 MAAKSPLDNVINLAKRRGFVFQAGEIYGGSRSAWDYGPLGVELKENIKAEWWKTFVRSRE DMVGLDSSIILPRAVWEASGHVETFTDPLVECTQCHRRHRQDHLLEAFEAKKGRPAEGMA EIVCPDCGTQGAWTEPQLFSGLVKTYLGPVDNEEGLHYMRPETAQGIFVNFLNVLGAARK KPPFGIGQIGKAFRNEITPGNFIFRTREFEQMEIEYFVPPAEAGQHFDRWVEDCWDWFID LGIDPANLRKFDVPADERAHYSDATIDLEYDFGFTGGDGWGELMGIANRTDYDLGRHTAH SGTKMQYFDQANNEHYTPYVIEPSFGLTRAMMAFLVDAYAEDEAPNAKGGVDVRTVLKLD PRLAPVKAAVLPLSKKPELQPATQSLAAELRTLWNIETDDSGAIGRRYRRQDEIGTPFCI TVDFDTLEDQAVTIRERDTMAQERVALSQVKSYLLERLVK >gi|289557475|gb|ADCD01000055.1| GENE 38 37818 - 38489 250 223 aa, chain + ## HITS:1 COG:Cgl0147 KEGG:ns NR:ns ## COG: Cgl0147 COG2501 # Protein_GI_number: 19551397 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Corynebacterium glutamicum # 157 209 8 60 97 63 60.0 3e-10 MALGALHERVGEGLDVAGGLPHGARQDDGGVQAHHVLTGAHEGLPPLGLDVLLQLHTQGP VVPRGARTAVDLTGLEHEASALGEVDDVVQRGLGSHGGITSVLIGGAGGDHDDDGTRPPS TRRARSGAARRSIPSSLPAMMDTMTETNAPDAQPLPIRDASIRLGQALKLASLVEDGAMA RDVVTDGLVTVNGAVETRRGAQLHDGDVVEFNGEAFVVQAEQA >gi|289557475|gb|ADCD01000055.1| GENE 39 38542 - 39327 647 261 aa, chain - ## HITS:1 COG:no KEGG:Mlut_06070 NR:ns ## KEGG: Mlut_06070 # Name: not_defined # Def: predicted esterase # Organism: M.luteus # Pathway: not_defined # 32 261 1 230 230 434 96.0 1e-120 MGYPRVGFCPPRAGGVNRRAGPTAPLARLADVNANPTPAVEPVVRWSRPEGGRTEDLLIL LHGYGANEDDLFGLVPHLPEHVTVAAVRAPLPLQPGSHAWFPLSQDPVTGELGSTAEPVR EAVEALHAWVQAVRGDFRIVSLLGFSQGMAMATSLLRLDPEAYACTVALSGFVVDPELTE PRLRELFTRDDDVARVRPKVFWGRGQEDPIISEPRVEETHAWLNAHVDLMKIVYAGLGHA INEQELGHVKEYLAHMVPPRG >gi|289557475|gb|ADCD01000055.1| GENE 40 39315 - 40208 580 297 aa, chain + ## HITS:1 COG:ML0466 KEGG:ns NR:ns ## COG: ML0466 COG2755 # Protein_GI_number: 15827150 # Func_class: E Amino acid transport and metabolism # Function: Lysophospholipase L1 and related esterases # Organism: Mycobacterium leprae # 28 277 41 289 301 121 36.0 2e-27 MGNPSSSQPPHASDATPVDDPAAHPWRRYVAIGDSFSEGIGDPDPDRPGYHRGWADRLAE ELSRLTPAGEDLAYANLAVRGKLLDQIAEDQVEPALALRPDLISVCAGGNDILRGADPDE IAARLDAVVERLASDGATVLLFNATDVKGTPVIGRIRGTVAIYNENVRTIALRHDALVPD MWSLKDLARREMWAEDRLHFSALGHHTIAAMVLDTLGVEHGLEHLRLAPPAPRTWREARA SDAAWVRTHLAPWVVRRLRGVSSGDGVTAKRPVPEPLFGAPMPQGSDHTEPLDIVEP >gi|289557475|gb|ADCD01000055.1| GENE 41 40284 - 41414 905 376 aa, chain - ## HITS:1 COG:ML0682 KEGG:ns NR:ns ## COG: ML0682 COG2021 # Protein_GI_number: 15827287 # Func_class: E Amino acid transport and metabolism # Function: Homoserine acetyltransferase # Organism: Mycobacterium leprae # 4 376 3 370 382 301 47.0 2e-81 MTAVATRPSRTALPRGGRHRLRVGELRTETGGLLPDVELAYETWGTLAADGSNAVLVLHA LTGDAHVAAHEQDPTPGWWDALVGPGRAVDTDRWFVVAPAMIGGCHGSTGPSTPAPDGRP WGSRFPFLTLRDAVEAERRLADHLGIGAWHAVIGGSMGGARALEWAATHPARVAGVGVLA ATAASSADQIAWGQAQTAAIRLDPDFQGGDYYPGPGPVAGLGIARRIAHTTYRTAGELGQ RFGREPQGVEDPFGTVVGVPGGRGRYAVESYLDHQAAKLADRFDANSYLVVTEALMGHDV GRGRGGVAAALADYRGRAFVAAVDSDRLYLPAESEALAAALPARPPVHTIASPIGHDGFL TEYGQVADTLKRALAL >gi|289557475|gb|ADCD01000055.1| GENE 42 41411 - 42778 1306 455 aa, chain - ## HITS:1 COG:MT3443 KEGG:ns NR:ns ## COG: MT3443 COG2873 # Protein_GI_number: 15842936 # Func_class: E Amino acid transport and metabolism # Function: O-acetylhomoserine sulfhydrylase # Organism: Mycobacterium tuberculosis CDC1551 # 12 449 16 442 449 517 65.0 1e-146 MTDQPTPTPDAWGFSTAQVHAGVAVGQHAFGATALPIFQTTSYDFPSAQVAADRFALQDL DPLYTRIGNPTQGPVEEKIAALEGGVGALLLASGQAATTFAILNLAGAGDHVVASASLYG GTQNLFKHTLAKVGVETTFVTDPDDIESWRAAVKPNTKAFFGETLGNPRGDVLDVRAVAD AAHEAGVPLIVDNTLATPYLLRPIEHGADVVTHSATKYLGGHAAAIAGVIVDAGTFDYAQ HAERYPGFNEPDESYHGLVYARDLGVGSPLGANLAFILKARVQLLRDYGSAISPFNAFLV NLGLETLSLRMERQVANAAAVARWLEGRDDVEHVVYAGLESSPWHERAQRYLPKGAGAFV SFEIAGGREAGAAFVDGLTLHHHVANIGDVRSLVVHPASTTHAQLTDDEQRAAGVTPGLV RLSLGVEDLEDILADLERGFAAAARRGDDDAGERA >gi|289557475|gb|ADCD01000055.1| GENE 43 43203 - 43838 651 211 aa, chain + ## HITS:1 COG:no KEGG:Mlut_06030 NR:ns ## KEGG: Mlut_06030 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 211 6 216 216 394 96.0 1e-108 MDHVSYAAGPEGLDATVARIAETLGIERIKGGVHPRFGTQNALFPMTGGQYLEVVEALDH PASLSAPFGQLVRARTEQGGGWMSWAVATPDIGRFERRLGREAVPGNRRFPDGRELSWRQ IGIKGTLADPQLPFILRWADGQEDMHPSQAAEPQATIEHLNIAGSPERLAEWLGDDEDGQ VQDVDIEYVAPSGTPGIVSVTFRTPKGEITL >gi|289557475|gb|ADCD01000055.1| GENE 44 43857 - 44753 813 298 aa, chain - ## HITS:1 COG:Cgl2838 KEGG:ns NR:ns ## COG: Cgl2838 COG1266 # Protein_GI_number: 19554088 # Func_class: R General function prediction only # Function: Predicted metal-dependent membrane protease # Organism: Corynebacterium glutamicum # 45 288 2 207 219 110 35.0 4e-24 MSATPRTSRTPAGPAVRPAPALPAPSARTVRWEIAIVLGLSLGKSAVYAIVQLIDKATQA PLGEQTTVLNPALADRWAFDLTYQLLGIGFALVPVALVLHLMHLRGRNPFRVLGLDLRRP GRDLAWGLGLFAAIGLGTLGVYAAGRALGITTAIVGSALGESWYQVPVLLLSALRHGLLE EVIVGAWLVDRLGYLQRLRDAGLARDPAPAVPSSWVSAEGLYLPTRAAVVVLGLALLRGA YHLYQGIGPGVGNALMGVVFALVFLRVRRVMPLVIAHALLDAVGFVGYPLLARAGLLG >gi|289557475|gb|ADCD01000055.1| GENE 45 45077 - 45683 240 202 aa, chain + ## HITS:1 COG:no KEGG:Mlut_06010 NR:ns ## KEGG: Mlut_06010 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 202 62 263 358 283 95.0 4e-75 MTRAHEVGAAPAARWAPERDPAAHLPRRLALLDGLAAALAELHVPWAVPVALSDPVPAGP GAAVLQRFLPGGPHPPHEGDPAVLRCVLDDLAAVDVTDPRIAPHLGRPFAFRGPWTPERA RHVAALPGAVAARLGAWAGHDVDARLGAEAWPDAVAALTDAVTAWTAAPPVPPSLVHGDL AGHNMRWRAVPEDEDPRAPLRW Prediction of potential genes in microbial genomes Time: Thu May 26 07:33:31 2011 Seq name: gi|289557452|gb|ADCD01000056.1| Micrococcus luteus SK58 ctg1119142780298, whole genome shotgun sequence Length of sequence - 21124 bp Number of predicted genes - 21, with homology - 19 Number of transcription units - 8, operones - 3 average op.length - 5.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 31 - 228 143 ## gi|289706292|ref|ZP_06502654.1| conserved hypothetical protein 2 2 Tu 1 . - CDS 153 - 2444 741 ## 3 3 Op 1 . + CDS 1431 - 2471 919 ## MMAR_3896 phage structural protein 4 3 Op 2 . + CDS 2486 - 2929 441 ## gi|289705807|ref|ZP_06502189.1| hypothetical protein HMPREF0569_0492 5 3 Op 3 . + CDS 2949 - 3368 214 ## gi|289705808|ref|ZP_06502190.1| hypothetical protein HMPREF0569_0493 6 3 Op 4 . + CDS 3368 - 3793 213 ## gi|289705809|ref|ZP_06502191.1| conserved domain protein 7 3 Op 5 . + CDS 3790 - 4170 404 ## gi|289705810|ref|ZP_06502192.1| hypothetical protein HMPREF0569_0495 8 3 Op 6 . + CDS 4248 - 4550 206 ## gi|289705811|ref|ZP_06502193.1| conserved domain protein 9 4 Tu 1 . - CDS 4368 - 4865 134 ## 10 5 Op 1 . + CDS 4822 - 5334 405 ## Blon_1111 hypothetical protein 11 5 Op 2 . + CDS 5411 - 6046 605 ## gi|289705814|ref|ZP_06502196.1| hypothetical protein HMPREF0569_0499 12 6 Op 1 . + CDS 6477 - 10868 3200 ## COG5283 Phage-related tail protein 13 6 Op 2 . + CDS 10871 - 11719 509 ## gi|289705816|ref|ZP_06502198.1| hypothetical protein HMPREF0569_0501 14 6 Op 3 . + CDS 11767 - 15147 1849 ## Mlut_09400 hypothetical protein 15 6 Op 4 . + CDS 15163 - 16932 1191 ## gi|289705818|ref|ZP_06502200.1| hypothetical protein HMPREF0569_0503 16 6 Op 5 . + CDS 17000 - 17305 212 ## gi|289705819|ref|ZP_06502201.1| hypothetical protein HMPREF0569_0504 17 6 Op 6 . + CDS 17302 - 17841 339 ## gi|289705820|ref|ZP_06502202.1| hypothetical protein HMPREF0569_0505 18 6 Op 7 . + CDS 17834 - 18940 727 ## gi|289705821|ref|ZP_06502203.1| conserved hypothetical protein 19 6 Op 8 . + CDS 18940 - 19929 581 ## gi|289705822|ref|ZP_06502204.1| hypothetical protein HMPREF0569_0508 20 7 Tu 1 . - CDS 19916 - 20422 289 ## gi|289705823|ref|ZP_06502205.1| GDSL-like lipase/acylhydrolase 21 8 Tu 1 . + CDS 20773 - 21057 214 ## gi|289705824|ref|ZP_06502206.1| hypothetical protein HMPREF0569_0509 Predicted protein(s) >gi|289557452|gb|ADCD01000056.1| GENE 1 31 - 228 143 65 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289706292|ref|ZP_06502654.1| ## NR: gi|289706292|ref|ZP_06502654.1| conserved hypothetical protein [Micrococcus luteus SK58] # 1 65 377 441 441 108 100.0 1e-22 MTEAERRRSDATLRWEAVLAGRNPYGRGPLTPALAATAETDYRRIVVLGDEAARLTTKKA AREAG >gi|289557452|gb|ADCD01000056.1| GENE 2 153 - 2444 741 763 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGLLDERHADAGDLGPGADRVELLQDGREQAGQLLEAEHAAVRGRELQGLGGDAPGGVAQ VAGVGRQHDHAVGRDGPGRGAVDVDLRGVDDDLGQVAGGQDGAELVVVQRGHHARAGQAG QGAGLHGGHEVGLGGAGHHDVAGPLAGGLLVLVGPGLQVRDRGRVLAVRPEDGGCHEVLG RQAEVGLQGEPVLVGQGELAVREDVAARELHAGLDGPSEVRAVVVHLVHELRRVPATTGA DALQLQPLVLAQRDLLRDRGQGHPRALEGRTGADRRLGVVGAERRGAVALDGAVDAGLDV RDEDVGEEAVEDPRRRGRDLTDVGGECRGRHEVDDLSHGSVLSVSAGDDAAGHVGLRGGV QAVSGRELRLDDHAVLHEGSAHLGGAGGDGDRVEQEAGGDLAAVGGRVVVGAVEAGRGDP AEHEPGEDRAVRDLVAGELAGVEGHRAGGLGAVGGAEPRAVLAEHGVLADADVHGVLLGT DAGLSRRSGVRGAGRGRRSGVRGAEALAGAGLAHGVVVLLGRVAGALTGIRHVLPGGGLA RAPGADPVVGVRGDLFLRGPAESLRGAEVEALLGGHLVAQEQGVLLGEGALGRRGLLLEL CEVLCLLLLGRLVAVLVVLQPLLQVRELGAELPVGLSLRGERLLARLAELLVAAVAGRLL FTGRGCRVALLTVAGGVVLHGGVTEEAAVELEQCLDAARCRQVDALAGGERGGDLTGVHG VPSLRGLPRAAPSRVRRSDQPASRAAFFVVRRAASSPRTTMRR >gi|289557452|gb|ADCD01000056.1| GENE 3 1431 - 2471 919 346 aa, chain + ## HITS:1 COG:no KEGG:MMAR_3896 NR:ns ## KEGG: MMAR_3896 # Name: not_defined # Def: phage structural protein # Organism: M.marinum # Pathway: not_defined # 8 345 9 352 353 157 33.0 7e-37 MAQIIDLVPPPALTAYVREVPSPTAWILNRFLPDVLVPDIEAGIDRTIKRNRAAAFRTYD AESPIGARSPFERSRVTLPPISEKIPLGEHERLQLERIRSGGSGNTAQLVDQVYDDGANL AGSIQARMELARGDVLTDGKFTLANENGLTLEADFGLPAEHLVAPSVLWSDRENATPVSD LEAWADQYEEATGERPGYVVMSRTAKAHLMASVEARSLAGLTGPGMVATLDNNQLGSILA ARDLPEIVVYSAQIDVNGTATRPIAADRVVMLPTNARDLGYTAWGITAESLEFAASNSGV LGFEQLPGLFASVLKEFDPVRTWTKVSGVGMPLIEQPHRLLVADVY >gi|289557452|gb|ADCD01000056.1| GENE 4 2486 - 2929 441 147 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289705807|ref|ZP_06502189.1| ## NR: gi|289705807|ref|ZP_06502189.1| hypothetical protein HMPREF0569_0492 [Micrococcus luteus SK58] # 1 147 1 147 147 225 100.0 5e-58 MADDVLQYTVTDHATGTRYVVGTVPPEKFLQHLRKHNPRALGAAPAGHISPAGAVTISTE VTTTQTVTEDPEDTGPAVYPEGAPDDTWTVKDLRAWAKANDLTLGEAKAKPQILEVIAEH LGETSPTVDESSNEEHDDTRTDSPESE >gi|289557452|gb|ADCD01000056.1| GENE 5 2949 - 3368 214 139 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289705808|ref|ZP_06502190.1| ## NR: gi|289705808|ref|ZP_06502190.1| hypothetical protein HMPREF0569_0493 [Micrococcus luteus SK58] # 1 139 1 139 139 224 100.0 9e-58 MTGILNADQETVEKFLLRPLTSQEATYVDGLLNTAWFRLLLALPSLPARLAAKELEQTIV DDVVGEMVANVFKNPSGARSRTTTINESMSLDDYSEQTQTSTQETIDRALAEGMLYPTES QLALLRPARAGAFTIRPGA >gi|289557452|gb|ADCD01000056.1| GENE 6 3368 - 3793 213 141 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289705809|ref|ZP_06502191.1| ## NR: gi|289705809|ref|ZP_06502191.1| conserved domain protein [Micrococcus luteus SK58] # 1 141 1 141 141 234 100.0 1e-60 MRSPEEIEACLLRGRAAAEALMTTRVRVHRATGRKTTDPRTGVVTVETSVVYGDGPDGDV GKVQTGAGGPRGREDVAGRFAVVEGPQVDLPVRSRCVAGDIVEVLASRMDPDLVGLRMEL RELDRGEYRTADRWSAELVTR >gi|289557452|gb|ADCD01000056.1| GENE 7 3790 - 4170 404 126 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289705810|ref|ZP_06502192.1| ## NR: gi|289705810|ref|ZP_06502192.1| hypothetical protein HMPREF0569_0495 [Micrococcus luteus SK58] # 1 126 1 126 126 223 100.0 3e-57 MNGSEELRAYATNLGRIGLEVAGEVDKVLKRGAQNIKTGLQENLRESKHFRQVAASISYD QIGDVRALGYEVGPDKDRHAGALANVAFFGTSRGGGTVDFEGPLREEEPRLVGHLQELLG RMGGDL >gi|289557452|gb|ADCD01000056.1| GENE 8 4248 - 4550 206 100 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289705811|ref|ZP_06502193.1| ## NR: gi|289705811|ref|ZP_06502193.1| conserved domain protein [Micrococcus luteus SK58] # 1 100 28 127 127 191 100.0 2e-47 MPAYPYVLVTPRRPWIRDRALSRARHGRRVSWLLTVAGLSSAAVLVLVDGCVSALDGGRV LGQRLELEPGGTDVLTDDETAPDGQIVHFAKLQFGLTLPA >gi|289557452|gb|ADCD01000056.1| GENE 9 4368 - 4865 134 165 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLPSAGVLGISVPAMSGLLVGHARLSGLGLGGGCRPGGPEAVLRRPDHRRGRVGLAVEQL EGPADPWIGLGDVELMAGVLVADAHEHGGLLPWGPRRAGRSPRPRSGGEREAELQLREVH DLAIRGGFVVCEDVRTAWFEFQPLPQDAAAVQCGDAPVDEHEDRG >gi|289557452|gb|ADCD01000056.1| GENE 10 4822 - 5334 405 170 aa, chain + ## HITS:1 COG:no KEGG:Blon_1111 NR:ns ## KEGG: Blon_1111 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 3 170 6 174 178 106 38.0 3e-22 MAGTEIPSTPADGNMLVLDVPAIADVDKPTIAELTASSAVDLSCYLTGDGWSPSKEQASI ADERLCSTETFERPGRKTRSLEVTYIDNTNSPYETEFNKAVDTLVEGTDHYLVTRRGVPY EEPLAVGQVVEIWPVTAGEQREVAIEANSVTRTVQKLFVRGPVRRAVVAA >gi|289557452|gb|ADCD01000056.1| GENE 11 5411 - 6046 605 211 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289705814|ref|ZP_06502196.1| ## NR: gi|289705814|ref|ZP_06502196.1| hypothetical protein HMPREF0569_0499 [Micrococcus luteus SK58] # 5 211 1 207 207 362 99.0 6e-99 MEPTVALHIKRAERVVEVCLDGTLTADWELTRAKVKDLLTEAKRVTGQVNAQPQDDRLNR RKTPAEKRMAEIEKELADLNEKAESLASAALEQTVLFRLRALPRPVWDQLVTAHPPRPAG EDGQSPDDPFPFNKEAIADAALEIDDAIVSVTRKHDGSAEEFTAADWPGFAAELSDSQHA DFRTTVVQLNVGSNDLPFFRASEPTRASGKK >gi|289557452|gb|ADCD01000056.1| GENE 12 6477 - 10868 3200 1463 aa, chain + ## HITS:1 COG:ECs2641 KEGG:ns NR:ns ## COG: ECs2641 COG5283 # Protein_GI_number: 15831895 # Func_class: S Function unknown # Function: Phage-related tail protein # Organism: Escherichia coli O157:H7 # 3 483 67 538 696 129 27.0 5e-29 MHKAKKAAGDLGQSTSRAAADSEASARKIAQAAAAVAKAQDRAKDAAGRLKVAEAELSRA RDSGSTVAVTRAEERLAKAQRDSESAAKRAADAQKAYRGALQASGAQVETIAEKVERASA SMEQVGGALLGAGGLLVAGAGMTVKTAADFDKAMSSVRAATHETEANMALLGEAAKKAGA DTAYSAEEAAQGIEEMAKAGVSTEEILGGGLDGALALAAAGALDVGDAAELAASALVQFK LDGSQIPHVADLLAAGAGKAQGSVEDLGAALNQSGLIAAQTGLDVEETTGALAMFANAGL TGSDAGTSFKTMLQRLNPQSKEAAQLMDELGLSAYDANGNFIGMEEYAGKLQGALAGMSE QQRSAALQTLFGSDAIRAASVLYEGGAEGVREWTEKVNDAGYAAETASIMQDNLAGDLEK LGGAFDTVFLQSGSGANDVLRDMVQGLEGVVDWVGSLPEGVLQIGTVFAGVTGGAALLAG ATLTVIPKIKETRDALNDLAPAGSKSAAAVGKLGKLAGVASVLSGVALAAIELAKATTSY DTMTTEKMATAIRNVANAGDDVVARKDQLNSVFSDWDVSAGSSAENIMGMDQALQHLVSS QGEFGRGLNDWANDAFAWTGLAKDNVGQVEDRLMELGNEMGNLASSGETEAATAAFQELA RSWEATGRPAEELFNTYMPGLRDSLKGVAAEMGVNIDDAQALEWALSGVAPEAVRTAEAS ADAEAAMAKMAAEAEAAAQKSQSLVDELAQTTGINPDGLNGMAEAMAILTDESEEAGDKL DKVIDALFRAGLAHMSVQDAQAAMYEAGDALNKAIEENAASLDLSTEAGRANVDALQGVA VAGFDAARAYAEAGKSQGTIRDALMETYEQLVAGYEAMGQSSEAADTLARQMMGIPEGVD IATSMDQQARIIAESTGEAIDAIPGYKGVTVAVSEEGTAGSVQQSIDEIDGVTRTVFVTT DGTEIPVQEAIRNVHGVERTVWVDDQGTVYGVQTDIDAITGKTVDLTAVSHTADAEGALN YAARSRTVSIFAKYTGIRTLSDLSRESGAGRGTVLKPGLAEGGIASLPGFSAGGRLPRAG LGTDMILGVTGSGTPIARVDDGEWIINQRSSAKWGALLDAINRDDPRLMGLPAFAGGGRV GAESLASSMSVAAARIVAAANALVAAMQTATLAVRAADTAGNAPRSKGRSAPKANTHGSS AAWTGSTRGYDKGTRDWVSMIEPERKARAKQGWNVVPWEYVVGTPGADHGDHPWETLGPA WMRQLERRYGPIFSGAIHEDWSGRVFFKDGRQIMLDSGGAWRWVSPKEEQFRARAFNGKL LRDFYPRFSAGGRLPGTGRGTDQILGVTGDGTPLAWLDDHEWVVNADSADRYPAALDLIN RDHPSVHHLRGRAAGEITTPSWSSYTPAPQLSMAAPAAAPAVDLGAVYAAARAGAESVVH TIEIDRRQFASIVQRNADYTAGR >gi|289557452|gb|ADCD01000056.1| GENE 13 10871 - 11719 509 282 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289705816|ref|ZP_06502198.1| ## NR: gi|289705816|ref|ZP_06502198.1| hypothetical protein HMPREF0569_0501 [Micrococcus luteus SK58] # 12 282 12 282 282 475 100.0 1e-132 MGGLFGPLGGLEELPCASTLAEAPAGDDVMREVQADDGTVYIQLAPQLANRVWQLSVGTS SPEDAAILARVRGAWYRRSGPSVWYSEAAQAENLLDPEAALMSPTRWSGITPGGGGILPD GYLPGPRFLESGATPLDGTWAQLTRIPIPMSRTVTVSCVVTAYPTRTARLQVDEVALDGR TVRSHQRTTTGVRDRLSLTFPTTGQTTSLTLAAADATTVTDPQITLTGQARPWAPGAGCM NAYISATSREVQLAVPGIPGGSLASYAWSIREIGHASMGYAG >gi|289557452|gb|ADCD01000056.1| GENE 14 11767 - 15147 1849 1126 aa, chain + ## HITS:1 COG:no KEGG:Mlut_09400 NR:ns ## KEGG: Mlut_09400 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 192 343 56 194 194 73 36.0 4e-11 MTLAALKAEFEGWYKPLLGTTFDADGAYPGQCVDLIHRAGKDLHGHPSTWGNGDALADAL IRERGYARVSESSKWQMGDVVSKWTGYYGGHVYLVLEDLGSSVRYIDLNGAGSADDPAGP VTVRTASKKNIIAVARPPRYVGATAAPAPPPAVTAASVLTAGGLSNVPALLAAQAATGVP LHIAAAFVEQESLGQNVYGGDPGGIFSTTPRTAVTRENYLVFLSRLLRADGTWTGVTSNG VGPMQLTYWAIHRDARRAGVDLSDPSANIAWGLTLVRGYLAGSSSQAAVQLAATRYNAGP AQTTVNWYGREVWEKAEAWRVKLAGTTTTDPDGETVIVPEQPGADPGPMPPSPPTVDGSP APLPPQTDPGARPVLADFQAREVTPLPAITPGPVAQTPALVSKPGARVYMRGAWWYPTTW KVGWDQGVPGPDQSPWGTGMTAATGEVTLVAVPTPLVMRDGLNPFRDEVPQEGEPVLVEI TKDGGLTWTRIFTGAVDDTAGVVGEREIRVGITDGVGSLDKAVSVPPRNFRHPSPIDGHR YMSIGSHGSSVTAEIAPVGGFRATPAPHPTATIVSAPMLGTAWAEVGTLEDSTTMVAKSP TSTTPSDSPEYVRTSWGLTVANLWARYRPRLGAGTSGRMNQSKAIRAFVAPVKDMPAFVE LWWRSSSIMLTVDWRGITVETQDGWLDNGFRNVLYGRTRALTEDEKAKGFELVAWIGADR SLSISVDGAVTTHKLFPSYTREMNGTNLSQVRITTWPDGTLLGGVQVYSTEDRSVIQPFT RNLILDVNPKEALFGVPAIEDRTALEVLREKAEKCLSTIWVDEYGRLWEVARTRMDARPS RRTLTRRDVLPGTGWLISKASVFSAVEGTWQQPSASQNRMSSGHGTTVWESSSDSIRPQD TWEDKATPPAGTDWISVDRSPLKLSLATVPQVNAGIGTTLAGTTRQTDGDGKVQEGVPSV TWYNATIERESSVSYPLEVRYRPPESVVALLQLAAPDLPDLSAAAKGKGLVLRARARQVW RDFSTARPKPTGNTTLDRTYKHDGGWWIQSPAVMDDTLVRLAQQFAQPLPALDGLELADI DPTIRRADTITLDRDGFLTPQRVVGLQWEGGRGGVRQILAVRQIRP >gi|289557452|gb|ADCD01000056.1| GENE 15 15163 - 16932 1191 589 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289705818|ref|ZP_06502200.1| ## NR: gi|289705818|ref|ZP_06502200.1| hypothetical protein HMPREF0569_0503 [Micrococcus luteus SK58] # 1 589 1 589 589 1101 100.0 0 MAQIAPLGVGMIDKDDQNHQTYTAEDSEFVANTIVARLQEFRAELEEMGMLLRAMAGEVG LKPQSPIDSQTAALISLAGSLSRQAVQAAAEAATRSQFGIRAEDAGVVGDGIADDTAAFH TAARTAAAAGVPLVLSAGTTIGISSYQKLPAGLVMHTNGATFKQLTPMGRAPVISLGPRS RVVGGIYVSLLGGAACQGVAITDAPDVEVDRVDVRSQVPAAGSGNVRDNGVRVLNSDRAS IGRTYVENFDWPVWAEKSKGVSLGWVEANTYAKGLHLDDVTRLRVGGGHVYGASPNSKFA PGYNGVLMEGDEGTDDVRITGFTVEDAGEHGYRVSGPAAHTNIWLDACMARNSGGTGFKV LGSLVSDSVYNKGITFNACRAIDSGQVNRNTCGFLIQMADGVTLISPVVEKDKKTFSAVE GIRMSGVRHVTISNPKIMDTHKFALHIDEACGNVQDISISKMHIQTGSGHGIYLQNPGVE FRELQIEAFVEVYAGEGAAFYAGRHTSEDTGTWRGINKLDITFSDSTGAERQISTYSSEN ALASFTANIVGRDDTTSPGSWPPFRPGSTRYNLRLGAFQVKRADAWNSL >gi|289557452|gb|ADCD01000056.1| GENE 16 17000 - 17305 212 101 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289705819|ref|ZP_06502201.1| ## NR: gi|289705819|ref|ZP_06502201.1| hypothetical protein HMPREF0569_0504 [Micrococcus luteus SK58] # 1 101 1 101 101 174 100.0 1e-42 MADDPKRYAEVPGGHLYLKAGQVPDQPYTETIAKNRASKDRELLDSMQATEAAALGAVAD LEAKWTTSHLERSTSGRLVFAQGTGTVPVTRTSTGRLVVRA >gi|289557452|gb|ADCD01000056.1| GENE 17 17302 - 17841 339 179 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289705820|ref|ZP_06502202.1| ## NR: gi|289705820|ref|ZP_06502202.1| hypothetical protein HMPREF0569_0505 [Micrococcus luteus SK58] # 1 179 1 179 179 265 100.0 1e-69 MTRILIDWGGRGTVVVARTHLEVDGARIHLPDGRLEHIDGPTVIDLDPTDPGDAWRIRHY PEHRTPFTWWVLIPEADDDAPPIPVTTLARIDPATLSPTTGPNPAAWTAALNTERAARAA AVADLRDALADLPAPSASVSHIAVTDGGRLAHRAGGSTTLTTTTSGRLAVVRAPGGTHG >gi|289557452|gb|ADCD01000056.1| GENE 18 17834 - 18940 727 368 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289705821|ref|ZP_06502203.1| ## NR: gi|289705821|ref|ZP_06502203.1| conserved hypothetical protein [Micrococcus luteus SK58] # 1 368 1 368 368 621 100.0 1e-176 MAENPEDLIVTDAELRRQLPALAKELKIGGVAGSVPIFPTLAEAQAWEAANPGKKALTLE PSTPDTTAPIAGTLTVSVKDKTATGTVSGATDDRAVTGYAFRVGSGAWSAWQSSPTYEFT GLSASTPYWFQHQVRDAAGNVAVGTAVQATTLAVMPVTDDYAYQWLGSQAGGSTWTDTKA GLALPLVGAAPIVEGPWVQFPRPGSAATSMYGPFTLSSLTTSTPTMVVVMRARVDYANRM GVAVGTFGSGGSLGIMNRDGAAKIPGLLVNGAQKNLGQAAYADGVVGVAVARFASGSNSL AWNGGTPVVDGATFDAAAMKSTNMHLAYVGGNTAFAGDLAEVRIYNRRLTDAEATQVATE LKQKYGIA >gi|289557452|gb|ADCD01000056.1| GENE 19 18940 - 19929 581 329 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289705822|ref|ZP_06502204.1| ## NR: gi|289705822|ref|ZP_06502204.1| hypothetical protein HMPREF0569_0508 [Micrococcus luteus SK58] # 1 329 1 329 329 595 100.0 1e-168 MPVNTTALRDYTDIWYGATMETVTGLVNANGVKFSRVHLKFGAENAYFYIPEVVRDGKKI TYVQWSHGFTGTYKDLESDYARATKFLSLAMDRGWVVSVGDDTGSSHWSTPPAIKAHRSH YAYAAERWNVQDVLLAGGSMGGLTTLNLLGNDVIPKVRATAVIVSVVDIPAMTTTGYADY VYPAWGVSNVPDLTAAIQGLDPARDDPQKWANKRIWINAGTADTLVPKVQHGDVFVGRAA TPSFIHYDFGSHGHGGPESDVPWVEWLSTYAPNYDATQNAPTDPGPPPPSTGGGTAPPAT PAGSGIYRADGREASLYRSDGTLVRLSRS >gi|289557452|gb|ADCD01000056.1| GENE 20 19916 - 20422 289 168 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|289705823|ref|ZP_06502205.1| ## NR: gi|289705823|ref|ZP_06502205.1| GDSL-like lipase/acylhydrolase [Micrococcus luteus SK58] # 1 168 47 214 214 270 100.0 2e-71 MAQEFMTGLPGAEVALVGDSHIAGGAWSEVLGMPVAARGQSGARIAELDGAVDALPHDAR EVVVWAGTNDVIAGHDVAQVEADMEAMLAKVEAVAPAASVIVLSVPPLNGWDEGPANDAL RRAADDAGAVYMETAPALDAHMASDGVHVRGPGYTALADRLRGALTTG >gi|289557452|gb|ADCD01000056.1| GENE 21 20773 - 21057 214 94 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289705824|ref|ZP_06502206.1| ## NR: gi|289705824|ref|ZP_06502206.1| hypothetical protein HMPREF0569_0509 [Micrococcus luteus SK58] # 1 94 51 144 144 149 100.0 4e-35 MWEFASPIAWALAAVFAGTLSALVVLRWRELAPAPLILQTAIWGAISALITWGAIGGGVP SAAIIYALPGWLCLLLVVLYISEARGHQAREDHR Prediction of potential genes in microbial genomes Time: Thu May 26 07:37:03 2011 Seq name: gi|289557426|gb|ADCD01000057.1| Micrococcus luteus SK58 ctg1119142780343, whole genome shotgun sequence Length of sequence - 25998 bp Number of predicted genes - 23, with homology - 23 Number of transcription units - 13, operones - 4 average op.length - 3.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 112 - 756 326 ## Mlut_18090 hypothetical protein 2 2 Op 1 . + CDS 1140 - 3974 2594 ## COG0550 Topoisomerase IA 3 2 Op 2 . + CDS 3980 - 5002 876 ## COG0248 Exopolyphosphatase 4 2 Op 3 1/0.000 + CDS 5005 - 5892 761 ## COG1082 Sugar phosphate isomerases/epimerases 5 2 Op 4 . + CDS 5889 - 6719 721 ## COG0345 Pyrroline-5-carboxylate reductase 6 3 Op 1 17/0.000 - CDS 6735 - 7412 480 ## COG0569 K+ transport systems, NAD-binding component 7 3 Op 2 . - CDS 7405 - 8682 1142 ## COG0168 Trk-type K+ transport systems, membrane components 8 4 Tu 1 . + CDS 8681 - 10270 1102 ## COG0123 Deacetylases, including yeast histone deacetylase and acetoin utilization protein + Term 10296 - 10322 -0.7 9 5 Tu 1 . + CDS 10627 - 10896 279 ## Mlut_18000 glutaredoxin 2 10 6 Tu 1 . - CDS 10903 - 11643 611 ## Mlut_17990 hypothetical protein 11 7 Op 1 4/0.000 + CDS 11769 - 12443 559 ## COG0406 Fructose-2,6-bisphosphatase 12 7 Op 2 13/0.000 + CDS 12597 - 13208 553 ## COG0526 Thiol-disulfide isomerase and thioredoxins 13 7 Op 3 4/0.000 + CDS 13225 - 13980 701 ## COG0785 Cytochrome c biogenesis protein 14 7 Op 4 8/0.000 + CDS 13962 - 15674 1480 ## COG1333 ResB protein required for cytochrome c biosynthesis 15 7 Op 5 . + CDS 15734 - 16774 872 ## COG0755 ABC-type transport system involved in cytochrome c biogenesis, permease component 16 8 Tu 1 . - CDS 16790 - 17194 435 ## Mlut_17930 hypothetical protein 17 9 Tu 1 . + CDS 17264 - 17539 154 ## Mlut_17920 hypothetical protein 18 10 Tu 1 . - CDS 17597 - 18469 856 ## COG1575 1,4-dihydroxy-2-naphthoate octaprenyltransferase 19 11 Op 1 . - CDS 18597 - 19778 921 ## COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 20 11 Op 2 . - CDS 19845 - 21410 1376 ## COG2985 Predicted permease 21 11 Op 3 . - CDS 21442 - 22419 912 ## COG0447 Dihydroxynaphthoic acid synthase - Prom 22581 - 22640 2.1 - Term 22649 - 22686 0.7 22 12 Tu 1 . - CDS 22829 - 23539 420 ## gi|289705849|ref|ZP_06502230.1| hypothetical protein HMPREF0569_2155 23 13 Tu 1 . - CDS 23705 - 25960 1909 ## COG1770 Protease II Predicted protein(s) >gi|289557426|gb|ADCD01000057.1| GENE 1 112 - 756 326 214 aa, chain - ## HITS:1 COG:no KEGG:Mlut_18090 NR:ns ## KEGG: Mlut_18090 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 214 1 214 214 403 98.0 1e-111 MTAPGSTADLVRRWESAARPNPTATDVGSLLEKCYRARPLAREILSGGHLQHDEELRNHT EKVLWTVTDTVTLLHFARHAFGSLDAYLLHLESEREDADAAAEWDEGAERADVAYWTGLE SQVPQEDHPYGLVLTQHALGQRVTAILEVEDGAVTGFTVEGVLGQMVDEHLEGLVGFPEP DPDFGEAVPVMRRGDPDDEMFVRHLRHAARLGLI >gi|289557426|gb|ADCD01000057.1| GENE 2 1140 - 3974 2594 944 aa, chain + ## HITS:1 COG:Cgl0309_1 KEGG:ns NR:ns ## COG: Cgl0309_1 COG0550 # Protein_GI_number: 19551559 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Corynebacterium glutamicum # 16 617 13 608 608 635 58.0 0 MSTTPASVTASVPEGKKLVIVESPAKSKSIAKYLNAVGSGWVVDSSVGHIRDLPKPSDLP ADMKKGPFGKFAVDTEHGFTPYYVVHPDKKKKVTELKRELKDAEALYLATDADREGEAIA WHLLDTLKPTVPVYRMTFGEITKEGVRRGLENIRELDTALVDAQETRRILDRLFGYELSP VLWRKVSRGLSAGRVQSVATRLVVERERERMAFVSAQYWGVEGTFTVAEGAQAAEAVGSS FTARLSTVDGERVATGRDFDDAGRLKASAGKKVTHLDEAGARSLAEGLRGADFTVDSVED KPYTRRPAAPFTTSTLQQEAARKLRMSSRVSMQVAQRLYENGYITYMRTDSVNLSQEAVQ AARRQATELSGADAVPAQPRVYAKRNETAQEAHEAIRPAGDSFRTPAQVEAELRPDEFRL YELIWKRTVASQMADAKGYTATLRLSAAAQDGRLAQFSASGTVITFKGFLDAYEEGRDAE VDGENAEAKDRRLPQVAQGERLTGDPIEATGHETSPPARYTEASIVAELERREIGRPSTY APTISTIMDRGYVSKRGTALVPSWTAFAVIGLLEDYFAKYVDYDFTARMEDDLDRIAAGE LGREAWLQTFYFGAPAAETEKGVEGLKHVVDNLGEIDARAVNSLPITEDITLRVGQYGPY LERSLPADAEAGATPPRANVPEDLAPDELTPAKAEELFATAQPSERELGTDPETGRTIVA KDGRYGPYVTEVIPEMTEEELQAWLDAQPTEYYKNGKPKPKKKPAKEKPRTGSLFTSMSV DTVTLEQALQLMSLPRVVGADAEGEVITAQNGRFGPYLKKGSDSRSLESEDQIFSITQEQ ALEIYAQPKQRGRGAAKPPLAEFGEDPVSGKKVTVKEGRFGPYITDGVTNITVPRGRQPE ELTAEEAYQLLADKRAKGPATRGGAKKPAARKAPAKKTTARKKA >gi|289557426|gb|ADCD01000057.1| GENE 3 3980 - 5002 876 340 aa, chain + ## HITS:1 COG:MT0516 KEGG:ns NR:ns ## COG: MT0516 COG0248 # Protein_GI_number: 15839888 # Func_class: F Nucleotide transport and metabolism; P Inorganic ion transport and metabolism # Function: Exopolyphosphatase # Organism: Mycobacterium tuberculosis CDC1551 # 1 306 1 306 344 293 52.0 3e-79 MRLGVLDIGSNTVHLLLVDAHPGARPVAYAEHKRSLPLIRYQDADGAITEEGQRELVDFV REAAAFAEEHRAEDMISFCTSAIRESANGAAVLARVQAETGVHLSELTGDQESAMTYFAV RRWQGWDAGSILNFDIGGGSFEIAYGQDELPSHALSLPLGAGRLTRDWVPEDPPSPKAVK KLRKHVEKRLEEAYTVFPRIESPVVVTATSKTFRSLARITGAAPSAAGPFVKRHLRADDL HLWVNRLAAMTIAERAELPGVSDVRAHQVFAGAIVALTAMRTFGIAQLEICPWALREGLI LNRLDALMLEGHLTRDGLPGVGHVNLNPDTLLPGLSLGVR >gi|289557426|gb|ADCD01000057.1| GENE 4 5005 - 5892 761 295 aa, chain + ## HITS:1 COG:MT0518 KEGG:ns NR:ns ## COG: MT0518 COG1082 # Protein_GI_number: 15839890 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar phosphate isomerases/epimerases # Organism: Mycobacterium tuberculosis CDC1551 # 18 271 5 278 280 202 43.0 6e-52 MVDATAHLAPAARFGADIPVTLSSSSVFPLGTQDVFATAEDLGYDGVEVMVTHNAWSQDA RRLMRLSERHGMPIDSIHAPTLLFTQQVWGSAWSKIRRSVELAQAVGAATVVAHPPFRWQ GTYAVRFAEGIHELMAETGVVIAVENMYPWRAYGREAKMYLPHWNPLPEPYEHICWDFSH AAIARADSLAAVRELGPRLRHVHLTDGNDSGKDDHLVPGEGTQRVAETLRHLATEGLAGA VCVEVGTRGVEYAGQREEKLAASLAFAREHLAAGGTDHHDDDGVPRPTTKETDRP >gi|289557426|gb|ADCD01000057.1| GENE 5 5889 - 6719 721 276 aa, chain + ## HITS:1 COG:Cgl0406 KEGG:ns NR:ns ## COG: Cgl0406 COG0345 # Protein_GI_number: 19551656 # Func_class: E Amino acid transport and metabolism # Function: Pyrroline-5-carboxylate reductase # Organism: Corynebacterium glutamicum # 9 272 12 272 273 125 35.0 8e-29 MKLTILGLGTMTGAILAGALDAGAVRAEDVTATTRSAASAEKAAAQHGVTVTSQERDERT NHAAVAEADIVLVGVKPKDMVATLTDLAPSLRPETVVVSVAAGVTAATMAAVLPAGQPIV RTMPNTPLTVGSGVVGVAPGPGVTEEQTTAVRALFEGSGLVVPVAEEQLSAVVATAGSAP AYVFLLAELIAAHGAEMGLDAASAEAMAAATVKGAGIMLQQEGARAEALRKAVMSPNGTT EKAVEAFLDGGMGDLVNRAMDAAAQRDKEMAEEFGA >gi|289557426|gb|ADCD01000057.1| GENE 6 6735 - 7412 480 225 aa, chain - ## HITS:1 COG:BH0467 KEGG:ns NR:ns ## COG: BH0467 COG0569 # Protein_GI_number: 15613030 # Func_class: P Inorganic ion transport and metabolism # Function: K+ transport systems, NAD-binding component # Organism: Bacillus halodurans # 16 221 11 217 222 160 39.0 2e-39 MADTPQRTDPNAPVLVVGLGRFGAATAEELVAQGREVLAVERDPVLVQRYAPSLTHVVEA DATDSEALRQLGAQDFSTAVVGVGTSIEASVLITVNLVDLEIPHIWVKAISEAHGTILKR IGANHVIFPEHDAGVRAAHLVNGRMLDFIEFDDDFAIVKMYPPAECVGFTLAESHVRSKY GVTVVGVKTPGEDFTYAQPDTRVGPRDTLIVSGHTDLIDRFAARP >gi|289557426|gb|ADCD01000057.1| GENE 7 7405 - 8682 1142 425 aa, chain - ## HITS:1 COG:BH0598 KEGG:ns NR:ns ## COG: BH0598 COG0168 # Protein_GI_number: 15613161 # Func_class: P Inorganic ion transport and metabolism # Function: Trk-type K+ transport systems, membrane components # Organism: Bacillus halodurans # 1 425 28 448 448 209 35.0 1e-53 MALVFTGLLALPWAAADGHATPLHDAMFTAVSAFSVTGLTTVNTAEHWSPAGQVIILVAI QIGGLGILSMASLLTLAVSRHLGLRSKLATQQAGMTSGSLGEVGQLLRVVVVTVLTAEAA LALVLVPRFAAISGSWLTGLWHGVFYSVSAFNNAGFTLHVDGLPEIMHDPVVITVLGVGV FLGALGFPVVMVLLEKGWRFREWNLHTKLTVEVTLALLVLGAVALFFFEAGNPATQAGMG FWQRVGHSLFGSVMTRSGGFAIDDTNAHQPESLLLMDALMFVGGGSASTAGGIKVTTLAI MFLAIVAEARGDREVTAHGRTIAPESLRVAIAVLALGATLVLVATLALVHITDESLQRPL FEVISAFGTCGLSVGVSAESPPAGKYVLTAMMFAGRVGTITFAAALALRQRRVLYRYPVE RPVIG >gi|289557426|gb|ADCD01000057.1| GENE 8 8681 - 10270 1102 529 aa, chain + ## HITS:1 COG:BH3237 KEGG:ns NR:ns ## COG: BH3237 COG0123 # Protein_GI_number: 15615799 # Func_class: B Chromatin structure and dynamics; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Deacetylases, including yeast histone deacetylase and acetoin utilization protein # Organism: Bacillus halodurans # 125 489 4 364 389 259 39.0 1e-68 MRAKAERAARAGEPPTTELTARPERRSAVRRSVEDSSVEAWPGRGSPPGRRTPPWRRACG VGRGPATGHLLHGDGERTGSQYRAPLRPARHVGETSEALVATVPPGALGWTVMSTTSTPP APTPAAVVWDSSLLRYRFSAEHPMAPLRLDLTHRLVEAFGLLDAPHVRIVEPPVATDEQL ALVHDPEYVAAVRRAAATSSDEDGCFGLGTEDCPVFPDLHESAARIAGGSLVAAEAIWSG EVDRAVNFAGGMHHAARSSASGFCIYNDCAVAIQRLLDLGAERVAYVDVDAHHGDGTQSI FYDDPRVLTISLHETGISLFPGTGFANEIGGSAAQGTAVNVALPPRTGDAGFLRAAHAVV PPLLQAFAPDVLVSQHGCDGHRTDPLADLRLSVDGQRQLAFDVGDWADRFAHGRWLATGG GGYNPLRVVPRAWAHLTAAVLQTPIPVKSEIPAAWIEHVRTLTADELTGDMSVHEGDDAE RIPTVMGEDADVWWRSWEVGYDPADPVDQSIMATRREVFPLHGLDPWFD >gi|289557426|gb|ADCD01000057.1| GENE 9 10627 - 10896 279 89 aa, chain + ## HITS:1 COG:no KEGG:Mlut_18000 NR:ns ## KEGG: Mlut_18000 # Name: not_defined # Def: glutaredoxin 2 # Organism: M.luteus # Pathway: not_defined # 1 89 1 89 89 149 96.0 2e-35 MTADLPAATARVQLLVKPGCHLCADAEATVAQVCDARGEAWEAVDGAAHPALLERFADEV PVLFVDGVQRDFWRVDPARLGRLLDAPRA >gi|289557426|gb|ADCD01000057.1| GENE 10 10903 - 11643 611 246 aa, chain - ## HITS:1 COG:no KEGG:Mlut_17990 NR:ns ## KEGG: Mlut_17990 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 246 1 241 241 338 95.0 1e-91 MSGTSPTDPHGSQNPYGSDPYGAAPQGPTPGSPDPSGASPYGQNPYGAPPAAPYGAPGQA GMPQAPSPHGPAGWQSPGPVELPPRPRSLTAAFWLIVSGGLLLLATTLLAAFAITQPEGQ AAIQQELDRSVEQMNLPADQAEQMRAMTDGMLPALATTAAVFGVLAFLVYLWVAFAIRGG SRAARIVGTVLASLSVLVLVSNAVMGAFSSLDLVWVGLGVAGIVLAYRPDATEYMRLKAW QRFARR >gi|289557426|gb|ADCD01000057.1| GENE 11 11769 - 12443 559 224 aa, chain + ## HITS:1 COG:ML2413 KEGG:ns NR:ns ## COG: ML2413 COG0406 # Protein_GI_number: 15828299 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Mycobacterium leprae # 7 210 7 199 202 175 51.0 6e-44 MQTLATVHLVRHGEVHNPDRVLYGRLPEFGLSELGHEMARGVAAWFEERAAQTGRAPAVV AASPLTRAQQTAAPIAAAFDLPLVTEPDLIEAENAFEGMSQVAASLKRNPRLWPRLRNPL RPSWGEPYRAQAARMLAVVDRLRGETVAADGPGAESVLVSHQLPIWVTRLAVEGRPLWHD PRRRECSLTSVTSLVYEEGRRVPRVEYREPNQALLKDASSLPGA >gi|289557426|gb|ADCD01000057.1| GENE 12 12597 - 13208 553 203 aa, chain + ## HITS:1 COG:MT0548 KEGG:ns NR:ns ## COG: MT0548 COG0526 # Protein_GI_number: 15839920 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Mycobacterium tuberculosis CDC1551 # 1 200 1 205 216 72 33.0 4e-13 MQTPRPSRRTVLTGLSLLGLAPVLAACSGDDSLTQQAGNADGKNYIAGDGSVLEIAPAER GAPVEFAAELFDGTPVTGASLRGAPALLNFWYAACAPCRVEAPHLVALHEQFAPQGVRFL GVNVRDTATTAQAFERTFEIPYPSIEDARGDVLLNMTDYVPPQAVPSTLVLDVEGRVAAR VLGAVEESTLRALLTTVVDEAAA >gi|289557426|gb|ADCD01000057.1| GENE 13 13225 - 13980 701 251 aa, chain + ## HITS:1 COG:MT0549 KEGG:ns NR:ns ## COG: MT0549 COG0785 # Protein_GI_number: 15839921 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Cytochrome c biogenesis protein # Organism: Mycobacterium tuberculosis CDC1551 # 6 251 4 259 259 147 42.0 1e-35 MQSNPFAEIALDGSLLLAAPIAVLAGLISFLSPCVLPLVPGYLGYVTGLGGDVLTSRRRG RLVLGSVLFVLGFAVVFVGITVVFTQAMVWLRRDGAWVTPVLGVLVMLMGLVFLGGGGRL QQERRVHFKPAAGLVGAPLLGMTFGLGWAPCIGPTMAAVLAMSTASSGSVGRGALLAFLY CLGLGLPFVLMALGMERGMRAVGFFTRHRVLIMRLGGALLIALGLLMVTGVWTAWTTQLQ LWFANEWEMPL >gi|289557426|gb|ADCD01000057.1| GENE 14 13962 - 15674 1480 570 aa, chain + ## HITS:1 COG:Rv0528 KEGG:ns NR:ns ## COG: Rv0528 COG1333 # Protein_GI_number: 15607668 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ResB protein required for cytochrome c biosynthesis # Organism: Mycobacterium tuberculosis H37Rv # 32 550 1 528 529 265 36.0 2e-70 MGDAPVSSKAARTRSEPVTLPRLGLAGTLRWIWTQLTSMSTALMLLLLLAVAAVPGSLVP QRRAGPEIVDQWIEDNPVWGPVLDALQFFDVYNSVWFSAIYLLLFVSLVGCVWPRAIQHA KALRQPPARTPRNLTRLPASGVVVLEEGGPSPEEAVARAQAWLRKRRYRVERRLEDGGAS VGAERGYLREIGNILFHVSLIGVLVFMAYGGMTKYGGQKIIVEGEGFANNLVAYDSFTPG TYFSADDLQPFSLTLNSFDAVFDRESETHYGQPLDYTAVMEVREGTEAEPHQEVLKVNHP LDIDGVRVYLVGNGYAPVVTIRDGAGDVAFQGPVVTRVFDNNYGSQATIKVPDARPDQLG FVGFFLPTAVEDEKGAAFSADPELLRPQLQLNSYVGDLGLDSGRPQNVYVLDTATLTELN SRTNENGGIVLSQGQTYELPEGKGSISFDGVRRYVGLDIVYDPGKWGVGVFAGTALLGLA ISLFVRRRRVWVRARTDDDGRTRVEYALLARGEEFGLHEEHVALRAAMERWWPVAAPESE EEAVASAAAVGHTGTTPETLAGPRTPRSGD >gi|289557426|gb|ADCD01000057.1| GENE 15 15734 - 16774 872 346 aa, chain + ## HITS:1 COG:Cgl0437 KEGG:ns NR:ns ## COG: Cgl0437 COG0755 # Protein_GI_number: 19551687 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in cytochrome c biogenesis, permease component # Organism: Corynebacterium glutamicum # 8 344 16 336 337 169 32.0 5e-42 MLIAALVYAAAFILFTIDMATASATIRRLEADLAAQRGQVRTAPDRETVGAAVGGSTAVG ASDSDTARPAAAEPGVDADDDLVDEDMDYTGGGRRPVANVAVAVLAVGWALHAFAVVARG LAASRVPWGNLYEFMTTGALVITTVYLLFLLRKDLRFVGTFVTGIVVAMMCAATMGFPTP VGHLQPPLQTPWLVIHVSIAVLASSLFALTAAMSVLQLLQDRAEKRAAAGERSWAFLRLV PAAQGLENWSYRLNAVGFVMWTFTLIAGAIWAEAAWGRYWNWDTKEVWTFVIWVVYAAYL HARATRGWTGARAAWLSIVGFLCIVFNYTIVNTYFPGLHSYAGLPG >gi|289557426|gb|ADCD01000057.1| GENE 16 16790 - 17194 435 134 aa, chain - ## HITS:1 COG:no KEGG:Mlut_17930 NR:ns ## KEGG: Mlut_17930 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 101 1 101 134 134 99.0 1e-30 MGRFIIPAAIILAGLTLYALFEALLTPAREVRSLPKAAWVAVIVLVPLVGPLLWLLLGRA RPAGAAGRPAPRPTGAPDDDEAFLRSLRVQRRQDAREQDLDRREAELRAREEELRRRREQ GDDDADPDGDGPRA >gi|289557426|gb|ADCD01000057.1| GENE 17 17264 - 17539 154 91 aa, chain + ## HITS:1 COG:no KEGG:Mlut_17920 NR:ns ## KEGG: Mlut_17920 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 91 1 91 91 153 97.0 2e-36 MRIFFYGLVRVVVFVALWALFYYVMDLGMIFGVIAATILTFAVSYLFLGRLRTGATQDLS AAWEGRPGRRGRTETADAEAEDAYTEGRFRE >gi|289557426|gb|ADCD01000057.1| GENE 18 17597 - 18469 856 290 aa, chain - ## HITS:1 COG:Cgl0443 KEGG:ns NR:ns ## COG: Cgl0443 COG1575 # Protein_GI_number: 19551693 # Func_class: H Coenzyme transport and metabolism # Function: 1,4-dihydroxy-2-naphthoate octaprenyltransferase # Organism: Corynebacterium glutamicum # 2 282 10 289 298 228 50.0 1e-59 MAATLSQWVAAARLRTLPMAIAPVIVGSAAAAELGSFHLGAALLALVVSLALQIGVNYAN DYSDGIRGTDDERVGPFRLTVSGLVPAARVKQAAFAFFGLAGLAGLGLILLSGHWWFLLV GVACVLAAWFYTGGKRPYGYLGLGEVFVFVFFGLVAVLGTTYTQADTVSGLAWAGAIGCG LISTALLMVNNIRDIPTDREVGKMTLAARLGDGPARASYGVMLAVALLLPLFWVAVHPGL LLVPIGGLLAIRPIRTVLRADDRRALIPVLRATGVIGIVYAITFTLGALL >gi|289557426|gb|ADCD01000057.1| GENE 19 18597 - 19778 921 393 aa, chain - ## HITS:1 COG:Cgl0445 KEGG:ns NR:ns ## COG: Cgl0445 COG0318 # Protein_GI_number: 19551695 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II # Organism: Corynebacterium glutamicum # 40 390 48 376 376 172 39.0 1e-42 MPATADALARATDALAAAFGGGAPVELTADGAALPRPEARDPRRCGDPEAVAVVRTSGST GTPKQIVLTGAALRASAAATARRLGGEGAWLLALGVHYVAGLAVLSRSIAAGTAPVALPP GPFTPAAFATGAAALPGDAGPRLVSLVPTQLARLLAADADPAGRAALRSFDRVLVGGARL DPALRAAAEAAGVRLTATYGMAETCGGCVYDGVPLPGVTVAVAPDDPDAPPRVRLAGPMV AAGYLDDPARTAAHFVPAADGARAFLTEDTGVLSPTDDGGVRLAVTGRLDDVVITGGVKV SAAAVTAVLEAHPGVAAAHVAGVPDPEWGARLCAAVVPADPAAAPDEAVLRAHVREALGA AAVPKTWLVLDALPLLSTGKTDRQALAARFTAG >gi|289557426|gb|ADCD01000057.1| GENE 20 19845 - 21410 1376 521 aa, chain - ## HITS:1 COG:Cgl2162 KEGG:ns NR:ns ## COG: Cgl2162 COG2985 # Protein_GI_number: 19553412 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Corynebacterium glutamicum # 2 521 1 535 539 183 29.0 8e-46 MLALLNDQPILVLMATVALGAAVGTIPLGKIRLGASGALFVGLLVGAVLPDVGDRLALFQ SFGLALFAYLIGLGAGKVFFRDLRRNLPLMLAAVVVVILTAFTVHPLAALLNLDLPTAIG VWTGSLTATPAMALANQLTGGQAPAVGYGLSYLVGVVGTIIAITLLAARPWSSSPRDPAP VTDGKLRFTAAAATSALAVREIPGISEGLVRVVALRHGGVARIAGSADRIEPGDEVVLDG TEKNIDAAVQAFGRRTDADPARVMNPLQTSMVIVTARALADRRLGTLSLRERFGTDVARL RRDDVESLATPQTELKVGDRVLIVTTAPRMEAVRDFFGNSTRGLSNLDWISLGTGMALGY LLGLVTIPLPGGASFSLGPAAGCILVGLALGAIGRTGPTVWEPSTEIALTLRQFGLMLFL GVVGLAAGPAFIETVFTRVGGLAILMSAVLTALTAALLIAAARLLGQSVDRTYGALAGIT GQPAILDYALSRSTDARVTEGYAQLFALIMVVKIATVPFML >gi|289557426|gb|ADCD01000057.1| GENE 21 21442 - 22419 912 325 aa, chain - ## HITS:1 COG:MT0573 KEGG:ns NR:ns ## COG: MT0573 COG0447 # Protein_GI_number: 15839944 # Func_class: H Coenzyme transport and metabolism # Function: Dihydroxynaphthoic acid synthase # Organism: Mycobacterium tuberculosis CDC1551 # 22 325 20 314 314 438 73.0 1e-123 MTPHSPEHPDRDRLPDKVSDLFDPTRWRVVEGFDFEDLTYHRQVERDADGRWVRDLPTVR IAFDRPEVRNAFRPGTVDELYRALDHARMTPDVGTVLLTGNGPSAKDGGHSFCSGGDQRI RGRDGYRYAQGDTAETIDPARAGRLHILEVQRLMRTSPKAIIAVVNGWAAGGGHSLHVVA DLTLASREHGKFKQTDATVGSFDAGYGSALLARQVGQKRAREIFFTAREYSAEDMVAMGA VNEAVEHARLEEVALEYAADINRQSPQALRMLKFAFNLADDGMAGQQVFAGEATRMAYMT DEAVEGRDAFLQKRDPDWSAFPYHF >gi|289557426|gb|ADCD01000057.1| GENE 22 22829 - 23539 420 236 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|289705849|ref|ZP_06502230.1| ## NR: gi|289705849|ref|ZP_06502230.1| hypothetical protein HMPREF0569_2155 [Micrococcus luteus SK58] # 42 236 12 206 206 326 100.0 8e-88 MSFTDSQSPASPPSLSRRTVAHGLAWTVPAVAAAAAAPAFAVSCANPAAFTGRFTQANVY GTPPSTYTWSAAGRTPITLSLNTVADSGKSLTPNNLTSAGGINQGYNGLGDLRADGLLLQ QSGSGGQRLTITFSRPVTNLQFTIADVDWLRSRYRDAIVLDPEPTSVTNGPPLQGNGTTG SPVSAVSAGEVTSDTVANRSRVTYAGPINSFTLYFSSTDGTTAQQIFLTGLTFFAC >gi|289557426|gb|ADCD01000057.1| GENE 23 23705 - 25960 1909 751 aa, chain - ## HITS:1 COG:MT0805 KEGG:ns NR:ns ## COG: MT0805 COG1770 # Protein_GI_number: 15840196 # Func_class: E Amino acid transport and metabolism # Function: Protease II # Organism: Mycobacterium tuberculosis CDC1551 # 12 741 7 696 718 560 45.0 1e-159 MGRMPQTTSHAPVPPSVSAEPVTRRHHGHTFQDDFEWLRGKAEPRVLEHLAAENAYTEAV TADQAPLREAIVGEIKARTVETDRSVPARRDGWWYFVRTREGAEYPIHCRVPARDTGDLE ADWTPPVITPDAALPGEQVILDGNAEAEGHPFFALGGLHISPDATRVAYAVDHTGDERFT LRVREIATGEDLPDAVENVAHGVRFDRSGTRVFYTVWDDSWRPYQVKAHVLGTDPAEDVL LHEEADPGMWTGFEGVADRTQLLIGVGNSEVSETLVVDLPEDPAAPLPAPRVLIPRAWRM LADVEPVTDADGVRRLLVVHDRALDDDGAPVAAPNGMLSVVAEADVADRDAWRTVVPHRE DVKVDGVMVTLTHAALAVRRETTPRVVVAELDAVLAGQAAHWREPAFDEELYACHLSATA AESPFLRLAYTSWITPARVLDVSAATGEVHLRRETEVPGYDPADYVAERVWAPASEPSSV TGEDVRIPVTVIRHRDVKPDGTAPCVVYGYGSYEMSMDPVLGVARLSLLDRGVVFAVAHV RGGGELGRRWYEDGKKLAKRHSFTDFVDATRHLVDLGWADPARVACMGGSAGGLLMGAVL NLAPELYRACLAVVPFVDALTTILNPELPLSALEWEEWGNPIEDAAVYEAMRAYTPYENV RGVDYPAIAAVTSLNDTRVHYVEPAKWVAQLRRTVTSDQATPLAEGGAPILLRTEMDGGH GGASGRYQGWEDTAWEYAFLLTALGATERVD Prediction of potential genes in microbial genomes Time: Thu May 26 07:37:42 2011 Seq name: gi|289557394|gb|ADCD01000058.1| Micrococcus luteus SK58 ctg1119142780315, whole genome shotgun sequence Length of sequence - 34344 bp Number of predicted genes - 30, with homology - 30 Number of transcription units - 13, operones - 5 average op.length - 4.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 1043 770 ## COG0381 UDP-N-acetylglucosamine 2-epimerase 2 2 Op 1 26/0.000 + CDS 1212 - 2120 844 ## COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component 3 2 Op 2 . + CDS 2117 - 2992 649 ## COG1134 ABC-type polysaccharide/polyol phosphate transport system, ATPase component 4 2 Op 3 . + CDS 2989 - 4794 831 ## Mlut_09050 hypothetical protein 5 3 Op 1 . - CDS 4798 - 7077 1505 ## COG0438 Glycosyltransferase 6 3 Op 2 . - CDS 7074 - 7931 341 ## Mlut_08940 hypothetical protein 7 3 Op 3 1/0.000 - CDS 7924 - 9471 823 ## COG0438 Glycosyltransferase 8 3 Op 4 1/0.000 - CDS 9679 - 10938 1064 ## COG0677 UDP-N-acetyl-D-mannosaminuronate dehydrogenase - Prom 11008 - 11067 2.3 9 3 Op 5 . - CDS 11094 - 12266 722 ## COG0438 Glycosyltransferase 10 3 Op 6 . - CDS 12256 - 13401 793 ## COG1316 Transcriptional regulator 11 3 Op 7 4/0.000 - CDS 13452 - 14369 626 ## COG0266 Formamidopyrimidine-DNA glycosylase 12 3 Op 8 . - CDS 14374 - 15108 575 ## COG0571 dsRNA-specific ribonuclease 13 3 Op 9 . - CDS 15110 - 15313 327 ## PROTEIN SUPPORTED gi|239917408|ref|YP_002956966.1| ribosomal protein L32 14 3 Op 10 . - CDS 15316 - 15888 437 ## COG1399 Predicted metal-binding, possibly nucleic acid-binding protein 15 4 Tu 1 . - CDS 16063 - 16977 757 ## COG1210 UDP-glucose pyrophosphorylase 16 5 Tu 1 . + CDS 16998 - 18905 1190 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase 17 6 Tu 1 . - CDS 17046 - 17519 292 ## PROTEIN SUPPORTED gi|163764798|ref|ZP_02171851.1| ribosomal protein S19 18 7 Op 1 1/0.000 - CDS 19143 - 19706 242 ## PROTEIN SUPPORTED gi|163764797|ref|ZP_02171850.1| ribosomal protein L29 19 7 Op 2 4/0.000 - CDS 19710 - 21902 1756 ## COG1200 RecG-like helicase 20 7 Op 3 . - CDS 21892 - 22797 711 ## COG1461 Predicted kinase related to dihydroxyacetone kinase 21 8 Tu 1 . - CDS 22926 - 24089 949 ## COG1316 Transcriptional regulator 22 9 Tu 1 . + CDS 24140 - 24619 315 ## Mlut_08800 hypothetical protein - Term 24446 - 24489 1.6 23 10 Op 1 4/0.000 - CDS 24648 - 25787 1017 ## COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes 24 10 Op 2 . - CDS 25784 - 26821 787 ## COG0240 Glycerol-3-phosphate dehydrogenase 25 10 Op 3 1/0.000 - CDS 26818 - 27474 519 ## COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase 26 10 Op 4 . - CDS 27573 - 28901 1305 ## COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase 27 11 Op 1 30/0.000 - CDS 29074 - 29679 533 ## COG0066 3-isopropylmalate dehydratase small subunit 28 11 Op 2 . - CDS 29683 - 32202 1489 ## COG0065 3-isopropylmalate dehydratase large subunit 29 12 Tu 1 . + CDS 32368 - 33732 1234 ## COG1004 Predicted UDP-glucose 6-dehydrogenase 30 13 Tu 1 . - CDS 33760 - 34344 314 ## Mlut_08710 thiamine-monophosphate kinase Predicted protein(s) >gi|289557394|gb|ADCD01000058.1| GENE 1 2 - 1043 770 347 aa, chain - ## HITS:1 COG:VC0917 KEGG:ns NR:ns ## COG: VC0917 COG0381 # Protein_GI_number: 15640933 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine 2-epimerase # Organism: Vibrio cholerae # 3 347 7 356 372 347 52.0 3e-95 MPIYGTRPEAIKVAPIVKALQADDRFECVVTVTGQHREMLDQVNELFGIVPDHDLNIIQP RQTLNGVFARTLDGLDAVLEQERPDAVVVQGDTTTSTAGAVAAFNRGIPVVHAEAGLRSF DILSPFPEEANRKITSQISALHLPPTTVSRDNLLREAVAAEDVYVTGNTVIDALLEAVGH QVPFEDERLAELEASGRRVVLVTTHRRENQGDAMRGVGRALARLAADHPQVTFVLPAHRN PVVREAILPEIEGRENVLVTEPLAYGEFTHLLSVATVVLTDSGGVQEEAPSLGKPVLVMR ENTERPEAVTAGTVRLIGTDEEVVVTEVTRLLTDEAAYTAMSQAVNP >gi|289557394|gb|ADCD01000058.1| GENE 2 1212 - 2120 844 302 aa, chain + ## HITS:1 COG:CAC2329 KEGG:ns NR:ns ## COG: CAC2329 COG1682 # Protein_GI_number: 15895596 # Func_class: G Carbohydrate transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: ABC-type polysaccharide/polyol phosphate export systems, permease component # Organism: Clostridium acetobutylicum # 68 301 30 257 258 82 27.0 1e-15 MKRGRDGMSDTGDPRVPSGTAVLTVDGASLRRVGARPGLARYLASLWEYRSFILFDSRSR IAGANSVNALGRVWMVLNPILDGAAYFLVFGLLLGTGRGVPNFLGYLIIGVFLFRYTSSA ITAGSRSISTNLSIVRAFRFPRATLPIATNIRELMLFGPTLVVMLLLVLAIPPMEQITWR WLLLIPLLALQTLFNVGASLLLARYVARWSDLSNLIAFGTRIWLYISAVFFSADRFANIP PLMTAMHLNPLYCVLDIARQSLLYASDADPMRWIVLAAWAAALLLVGTVVFWRAEETYGE ER >gi|289557394|gb|ADCD01000058.1| GENE 3 2117 - 2992 649 291 aa, chain + ## HITS:1 COG:BS_tagH_1 KEGG:ns NR:ns ## COG: BS_tagH_1 COG1134 # Protein_GI_number: 16080623 # Func_class: G Carbohydrate transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: ABC-type polysaccharide/polyol phosphate transport system, ATPase component # Organism: Bacillus subtilis # 50 246 38 233 235 174 41.0 2e-43 MSAEPLTPSVVVDEASMTYRVLSAEAVQPRRGLRGRVRAARGVRTTEVQALQPLSFVVGR GESVGVIGTNGSGKSTLMKLITGQMRPTTGHIYATSTPVMLGVNAALVRQVSGEDNIRLG CLAMGMSRAEAEAKRDAVVALSGLDDHALQLPLKAYSSGMAARLQFAIATSVDPDILVID EALNTGDAQFRERTRQRLDELREQAGCVFLVSHSLSTIQEMCQRVIWIERGVLTMDGSPR AVTRGYNLYARAMAQGRTEEAQEILERKRSELVRERIAWTGGERPTGITAL >gi|289557394|gb|ADCD01000058.1| GENE 4 2989 - 4794 831 601 aa, chain + ## HITS:1 COG:no KEGG:Mlut_09050 NR:ns ## KEGG: Mlut_09050 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 597 14 610 611 767 92.0 0 MNVAGARLRRWAGRARVVGERAVVTAGDAGTSALRAARGARGAATLPERTWRAADVHVPD AAAALPLPAAAALRRALTGGRVPSLDAFSPLGPRPADAPAVLLLPVAGPAAGGWSVEAAA ELAARRCTDLETPPGTPGLHTVLVTDPASRGALIAALRTAGARLPGVVLVACPDPATAAG RARFLAALGLIDAVLAPEGTRLDPVPASVAARAGRAVIGPDRAGETWERLATAGRAARLD SLTPAEAAGPPAASAPRVRVTAEPRRVVVAGHDLKFAGALMDRLRADGHEVRVDAWRGHA RHDVERSRALAAWADVVHCEWSLGNLAWYSRHLDSPHRTTRLTSRLHLQEAGTAFPSRVR QDALDAWVFVAEHVRAQVLRDTRFPAARTSVVPNAVAVPPTLPDGDDDRRFVLGLVGVLP ERKGLHRALDLLAALRRAEPRHTLRIRGHHPEEVGWMAQRPAAAAYYRTQLRRIETDPML AGAVAWDPHGPDMPAWYARVGVALSVSDFESFHFTLPDGAAHGCLPAALAWAGADLLYPA AWLSPDVATMADALRRATADARAWRSAVAQARRDVAHTYAEEDVVPALADVVLGTRAPRR P >gi|289557394|gb|ADCD01000058.1| GENE 5 4798 - 7077 1505 759 aa, chain - ## HITS:1 COG:TM0756_2 KEGG:ns NR:ns ## COG: TM0756_2 COG0438 # Protein_GI_number: 15643519 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Thermotoga maritima # 472 717 37 275 336 85 29.0 3e-16 MSTDHLTAVSETTDRPRVPVVLLYGDVDLNVLDGSAVWLGSMAETWVAAGAEVHVQLKAL ERRDVLTSDLRALAGVTLHEADPEPGTDQMGRPRAVEVLEDLAERLHPDIVMVRGIHLCA EVARRGAFPGRLWSYVTEFGYPSSGAAPAKLDVIRSIAAASRVMLAQTEDARAVLEAYVP EAAGRTLVLTPMIPDALVASAAQARAHGEAAAHSDAGRPLELVYTGKFARNWRTDLMPAL VPALGGHGVPARLTMVGDKVHREKSDPTFFGRMTELMQTPDPAVTWTGGVPRSAALDHTA RADVALSWRSPALDVSLELSTKVLESCALGVPPVLNRTAAHERLLGVDWPLFVEPHTDSV EGVAQLLAKARPHLGVLAERAVAAAAPYRVSARAEVLRGYVERVVPGFSPQALPALRSAE TTDRNPASPGRPLRVVVAGHDLKFAGELLDMLRTHPGVELRIDRWARLHQHDASVSREHV EWADVVLCEWAGPNAVWYARHKRPGQKLVVRLHMFELRGAWLKDLDLDAVDTLITVSDHY RDLTVEELGADPERVRVIPNAVSVADLAREPVAGAEFRLGLVGIVPLRKRLDRALDLLRV LRAADDRFTLHVRGRMPWEYRHEWHDPLQREGYLDLFAKLGGDPLHRAVAFEPFGADMGT WLRRMGWVLSPSSVESFHLAPAEGMAAGSLPVIWDRPGADGVFGADLVHADTDAAARWIL DLTQDEARRQDWSARMRERVLAFDERTVARAWAEALGLD >gi|289557394|gb|ADCD01000058.1| GENE 6 7074 - 7931 341 285 aa, chain - ## HITS:1 COG:no KEGG:Mlut_08940 NR:ns ## KEGG: Mlut_08940 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 267 1 250 256 97 40.0 4e-19 MPEKPLSRRVVSAGGRILRATRRRVEPNLSPEMRRRLSRAVRAMPDPVAQRVRGAARITP STPVGGGRGRGRGRGRPALVMDPLDLLVDVPAAGVQTAGRAAAAVRDDAGAAARLDRALH GSHPPLSRPAGGGRRVAVLARPEIEEALIDAGHAVEPLVPGTARAVMARVEVAVLDLEGF TGVWGGALDAEGVGLAREIMTAVEEGARRGVTTWLAAGTGQRSHLGAPTLLAHPNIEALD VLNPAPPIHYTQDPTDAPRGVGDVVLAVLHDAEPHVRPLARETHA >gi|289557394|gb|ADCD01000058.1| GENE 7 7924 - 9471 823 515 aa, chain - ## HITS:1 COG:MA4452 KEGG:ns NR:ns ## COG: MA4452 COG0438 # Protein_GI_number: 20093238 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Methanosarcina acetivorans str.C2A # 273 498 163 389 404 101 29.0 4e-21 MLGATEDAQERLAAAEGIRYAPARADVLVHLSAFEDAAAVLEAVPPASRGAAWHAAASRL AHHTGDLDAAVRHARVHRRNRALARRMAGEREALTGDWPTLPRETGYTPRPGRVLHVLTN SLPHTRSGYAQRSHAILRAQAEAGLQVSAVTRPGYPVQVGVPWARAVDVVDGIEYHRLMP SRLAQGQAARVRQHAALLLELVRTERPALLHTTTHYVNAMAVRAVAEACGIPWVYEVRGR LADTWAATRGPAATASPRYAAFTAREAQAARAADAVVTLGEGMRQTLVTEGVDPERIVLA PNAVDARFEAPPPSRATARNHLGLDPDGRYVGTVSSIVDYEGLDLLVRAAARLAPEHPRL RLRIVGDGVALPGLRVLAHRLGIADICEFPGRVAREDAVWHHSALDVFCVPRRDLPVTRA VTPMKSVEASAIGRPVVASDLPALAELVEDGVTGELFRAEDLDAFVAALGRLLSRPEEAE RLGRAGRDWALATRTWSSNVTRYRDLYTALGVTDA >gi|289557394|gb|ADCD01000058.1| GENE 8 9679 - 10938 1064 419 aa, chain - ## HITS:1 COG:ECs4720 KEGG:ns NR:ns ## COG: ECs4720 COG0677 # Protein_GI_number: 15833974 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetyl-D-mannosaminuronate dehydrogenase # Organism: Escherichia coli O157:H7 # 8 414 6 420 420 468 58.0 1e-131 MTTQIKDVAVIGLGYIGLPTAAILAENGVRVHGVDVSDRTVDAVNAGTVPFVEPDLAGFV ARGVEKGLLSASKTTPEADAYIVAVPTPFKDGHSPDLGYIEAAARGLAPQLTGDELVILE STSPPGATEHMAEVIFAERPELRESELDFAHCPERVLPGRVMVELVTNDRIVGGSTRRAA ERARDLYRTFCEGEILLTDTRTAEMAKLVENSFRDVNIAFANELSVICAEQGIDVWELIE LANHHPRVNILQPGPGVGGHCIAVDPWFIVDAAPQTARLIRAAREINDSKPQWVIDQVKA AAFDVQQATGRAPVVAALGLAFKPNIDDLRESPALNIAAELAGQFSGSDVLVVEPHVTEL PAALQGKDNVRLVEVDEALDAADIVVLLVDHSAFADLGERVADKRVIDTRGQWRETPGS >gi|289557394|gb|ADCD01000058.1| GENE 9 11094 - 12266 722 390 aa, chain - ## HITS:1 COG:alr1668 KEGG:ns NR:ns ## COG: alr1668 COG0438 # Protein_GI_number: 17229160 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Nostoc sp. PCC 7120 # 88 390 95 408 427 97 26.0 6e-20 MTTEPRRPRLLLVSHSYRPERTPPARRWGAVVAALRSAGWDVDVVAPGGVRPFAGPDGER VLPTPRLPLGEAGRNGRFAEAVVHALLAIPRGMATRRPDVVVATVPALPVVVPGVVLSRL WRRPLVLEMRDAWPDLAHEAGVHQGLLGVAMERVVTGGQRAARLVVTVTDGFAETLRGRG VRVVRTLGNGVDLARLAVAPRRERAAGELHVLYLGNMGESQGLERLIDAAATLRRTRPGV RVRLVGEGTRRPALEARNAELGSPAEILGPVHGAAVAEQYAWADTLVVALRPDWPSFRHT VPSKTYEVLAVGRHVTGLVTGEAARTLAAAGGAEVVGPDVDDLVRHLTALADDPHRTDVG AGGRDWVRRHADLPAVARRYERLLRRVAGR >gi|289557394|gb|ADCD01000058.1| GENE 10 12256 - 13401 793 381 aa, chain - ## HITS:1 COG:Cgl0718 KEGG:ns NR:ns ## COG: Cgl0718 COG1316 # Protein_GI_number: 19551968 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Corynebacterium glutamicum # 37 325 32 358 518 107 27.0 4e-23 MSHPPAASWTPEPLPRPESPRDDAPPVARRRRRWPWVVGVLAVLLAALLGLGAWYAGSLG RTFDDHRQTVDVGALEQAAGDGPLNVLVLGSDSREGEGEQDMGQRSDTMMLVHIPADRRQ VYVMSVLRDSWVTVPGHGEAKINSAFDTGGYALAVDTVELLLGVPIHHVLEVDFQGFRGV TNALGGVEVCNPQAFSSGQANPSYYPRGHILLQDTAALRYVRERHAFDDGDVTRVKNQQR YLAGAMDRFLSPQILGNPARTTEVVATFSDHLGVDEGLTSGVIASLAWQLRDVRGEDVEM FTVPRKGFAEGPNGDAIVELDEDKLADLRSALADDDVQRYVDEHEPKKERKAQAAGGPTP VLTLLTGTTPAPALGEDPCDD >gi|289557394|gb|ADCD01000058.1| GENE 11 13452 - 14369 626 305 aa, chain - ## HITS:1 COG:Cgl2021 KEGG:ns NR:ns ## COG: Cgl2021 COG0266 # Protein_GI_number: 19553271 # Func_class: L Replication, recombination and repair # Function: Formamidopyrimidine-DNA glycosylase # Organism: Corynebacterium glutamicum # 1 294 1 285 286 250 47.0 3e-66 MPELPEAEVVRRGLARWATDAVAAELEVLDPRSLRRSPGGADALRERLRGARLAEPARRG KFLWLPLAEGDDAVVVHLGMSGQILVDEPGAADQRHLRLRLPVTAADGSARELRFVDQRI FGGWWLDALRPDDAAGGERIPTTAAHIALDPLHPLFDPVAVHARLARRRSTLKRALLDQS LVSGIGNIYADEALWGARLHPERPTERMRRADTLRLMAAVQDVMRRALEVGGTSFDALYV NVDGRSGYFARSLAAYGRTGQPCRRCAAEGVDTRIVREPFMNRASHLCPRCQPRPRRRRA VAADA >gi|289557394|gb|ADCD01000058.1| GENE 12 14374 - 15108 575 244 aa, chain - ## HITS:1 COG:MT2995 KEGG:ns NR:ns ## COG: MT2995 COG0571 # Protein_GI_number: 15842471 # Func_class: K Transcription # Function: dsRNA-specific ribonuclease # Organism: Mycobacterium tuberculosis CDC1551 # 17 219 6 211 240 186 51.0 4e-47 MASPSARRRPEPAPEPEELFERLGVHITAGTLERALTHRSFAYEQGGLPTNERLEFLGDS VLGYVVTDHIFTVYPDLAEGDLARRRAAVVSTRALAKVARRIGIGPFVRLGTGERRTGGA DKDSILADTLEALIGAVYVDHGAVAAAALVHRHVVPLLDEPDLLRESTDWKTVVAEAASR HGLGAVRYAIEGQGPAHDPRYRATLVVGEREYDSAVASSKKQAERDAAAASWPALEADLP AAGR >gi|289557394|gb|ADCD01000058.1| GENE 13 15110 - 15313 327 67 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|239917408|ref|YP_002956966.1| ribosomal protein L32 [Micrococcus luteus NCTC 2665] # 1 67 1 67 67 130 95 1e-29 MAVPKRKMSRANTRARRSQWKATAPALVKSVENGRVSYRLPHQAELKTDAAGTPLFFEYK GRKVADA >gi|289557394|gb|ADCD01000058.1| GENE 14 15316 - 15888 437 190 aa, chain - ## HITS:1 COG:Rv2926c KEGG:ns NR:ns ## COG: Rv2926c COG1399 # Protein_GI_number: 15610063 # Func_class: R General function prediction only # Function: Predicted metal-binding, possibly nucleic acid-binding protein # Organism: Mycobacterium tuberculosis H37Rv # 3 184 20 203 207 128 43.0 5e-30 MDSIQHHGADSPWVIPVRDLTRGAGVQRELTAEWPAPAGVSTPLLGIPEGDPVELDLRLE SVHEGVLVTGTADATLKGECGRCLRPLHEGITVDLQELYLTGTSEDDAGEQPLVVRETVD LEPVFRDAVVIALPFQPLCRPDCEGLCADCGIRLEDAPEGHAHERVDPRWAALAHLAGTS ETSITETEER >gi|289557394|gb|ADCD01000058.1| GENE 15 16063 - 16977 757 304 aa, chain - ## HITS:1 COG:CAC2335 KEGG:ns NR:ns ## COG: CAC2335 COG1210 # Protein_GI_number: 15895602 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose pyrophosphorylase # Organism: Clostridium acetobutylicum # 10 289 2 274 303 300 51.0 2e-81 MTVPPPSRPRTRKAVIPAAGLGTRFLPATKAMPKEMLPVVDRPAIEYVVSEARRAGLADV LMITGRNKRALEDHFDRHPALEAALEHKGDTKRLAQIHESDLVGDIHYVRQGEALGLGHA VNCARRHVGEEPFAVLLGDDIIGDGEALLERMIDVQQRLGGSVIALMEVPEEAVSAYGVA AVEAVPGEGDDVVRVTDLVEKPAREDAPSTLAIIGRYVLAPQVFDVLDETPPGRGGEIQL TDALQRLATEDGEGRGVHAVVFDGRRYDTGDKLGYLQAVIEFGTRHEDLGADLRAWLQEF TAGL >gi|289557394|gb|ADCD01000058.1| GENE 16 16998 - 18905 1190 635 aa, chain + ## HITS:1 COG:MT0881 KEGG:ns NR:ns ## COG: MT0881 COG0436 # Protein_GI_number: 15840271 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Mycobacterium tuberculosis CDC1551 # 257 631 12 394 397 276 45.0 7e-74 MRWDERKGGPRVGRAGSGPAVEAAQDRGRDELGDVAAESVDLLDERGGHVGVPGVGREVD RFDPGEVAVHRGHRGLELEVGTAAQSLDDRVRTDLPAELGQQARAHGPDRDAGEGRHRRL DHGDALVHAEAVRLGRVGGHGDHHLLEEVRGSRDHLDVPLVEGIERTRADGTTHGCQPSG GRAGRRRTPVRSGPGASRSCRARRAPPCAVRGDGYSAAMDGTQPTPGAAPHDVDVDAPWR RTAAAAGLLGDAGPVPTVFETMTGLAVEHGAVNLGQGFPDADGPDALRRLAADAVLAGPN QYAPGTGDPALRRAVAEHRRRHWGVTEDPATQVMITTGATEGIAATVLAFVRPGDEVVTV EPFYDSHAATIALAGARHVGVPVEAPDFLPDPARVADAITDRTRLLIVNTPHNPTGAVYP RELLEELVALCRSRGVLILSDEVYDHLVYEGEHVSLRSVAGAEDIALTVSSAGKAFAVTG WKVGWLTGPAELVGAARAVKQFLTYSSGPAFQRALGAYLPTDDAERHLAGQRERYRDARD RLVAGLREAGLDPVVPAAGYFVVVDLAPWGVTDAAEAAVRWTREAGVTGIPVGALCRPDG GHLRSWLRLAFCKSPDAIDEAMRRLAEAAPRLRAA >gi|289557394|gb|ADCD01000058.1| GENE 17 17046 - 17519 292 157 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764798|ref|ZP_02171851.1| ribosomal protein S19 [Bacillus selenitireducens MLS10] # 2 153 4 155 164 117 39 1e-25 MRRAVCPGSFDPLHKGHVEVIARAANLFEEVVVAVSSNPAKTYRFSVDERIAMIEATVSS LAGVAVRPMGPGLLAEFCRQIGADAIVKGLRGGADLEFEAPMAAMNRHLTGVETVYLPAD ARYTHVSSSLIKEVHGFGGDVAEFVPAAVLRGLDGGA >gi|289557394|gb|ADCD01000058.1| GENE 18 19143 - 19706 242 187 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764797|ref|ZP_02171850.1| ribosomal protein L29 [Bacillus selenitireducens MLS10] # 1 186 12 197 199 97 32 8e-20 MSRIIAGAAAGRPLTAVPGTGTRPTTDRTKEALFSWLEARDWLDGTAVLDLYAGSGALGC EAASRGAASVLLVERDRKAVTACRANAALVNRARGADVVRVRAGSVEQALAAEAAPVDLI LADPPYPVAGPPLEAVVEAAAERLAPGGLLVLERAARDAAPRRPRGLEEVEVRVYGETAL YLWQDER >gi|289557394|gb|ADCD01000058.1| GENE 19 19710 - 21902 1756 730 aa, chain - ## HITS:1 COG:MT3051 KEGG:ns NR:ns ## COG: MT3051 COG1200 # Protein_GI_number: 15842526 # Func_class: L Replication, recombination and repair; K Transcription # Function: RecG-like helicase # Organism: Mycobacterium tuberculosis CDC1551 # 12 718 8 727 737 417 41.0 1e-116 MAAEAPVTDLPLSEVLGGTLPARLEKELGLTTVGDLLDHVPRRWIERGELTPIAALPYDA EVTVVAVVESVATRRMHSRPGFIVDVTVADPSVAGVPGASLSMAFFNGHDARRRLAPGMT AMFQGRTTEYRGRITLNNPDFALLDDDVAPGEVDVRPVPLYRATGKLPSWTVRSAVVRVL ETVDLGRIPELLTERIRAEAAAALDLDAPLPGTAQAYRDLHAPHDVAATGPAQTALALRE ALLVQAALAWRRDRERAVPAVPRPPRPGGLLEALDARLPFVLTPGQVAVGEQLSAELARD APMSRLLQGDVGAGKTLVALRAMLQVVDAGGQAALVAPTEVLAAQHNRALLRLMGPLAEA GTLGAGDGPATRVALVTGSLKTAARREALLALASGEAGIAVGTHALLSEKVGFAELALAV VDEQHRFGVDQREALRRANPGTHLLVMSATPIPRSVAMTVFGDLDLSVLEGLPSGRQPVT THVARMAHGPRVIGRVWELIAEHVAAGHQAFVVCPRIDPDDADPGHANVEEMTPRLRGLP ALAGLRIDAVHGRMDQAEQDAAMQAFARGATDVLVATTVIEVGVDVPNATVMAILDADDF GLSTLHQLRGRVGRGPGAAVCLLATRLPDGHPSLRRLEVLAQEQDGMRIAQEDLAQRGVG DVLGAAQSGLASGLHHVDVIADAPLIAVAADAVAQVMAAGPGLSAHPALAAEVARWEAEH LTAADYLEKG >gi|289557394|gb|ADCD01000058.1| GENE 20 21892 - 22797 711 301 aa, chain - ## HITS:1 COG:FN1927_1 KEGG:ns NR:ns ## COG: FN1927_1 COG1461 # Protein_GI_number: 19705232 # Func_class: R General function prediction only # Function: Predicted kinase related to dihydroxyacetone kinase # Organism: Fusobacterium nucleatum # 1 285 48 307 560 82 26.0 1e-15 MLATLTAARTAADACPAQDDAGAVLAHAGAAALDSARGNSGMLLAVSLAGMAEPLRGRER VDAFALAAAFGAADRAARQALSDPREGTILTVLSAAARSLARSSTQAPDTPAVAGDADPA VRLGPAVTLMLADCVQAVEETESLLAPLTRARVVDAGAVGLLWVFEALRSVVTGTPVDEE LATALPGYVEGAHAAEGEPAAEPEAPTEGAVEVMGTLTLTPLAAAELRRRLADVGDAVIL APVGTARDAQGRVPWRVHVHVPRAEDAIGPLRAAGDVEGLAVTDLAEPSHGDAAPDGCHG R >gi|289557394|gb|ADCD01000058.1| GENE 21 22926 - 24089 949 387 aa, chain - ## HITS:1 COG:BH3670 KEGG:ns NR:ns ## COG: BH3670 COG1316 # Protein_GI_number: 15616232 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus halodurans # 141 311 67 240 304 115 40.0 1e-25 MGGTVPVPAPGAHVSSTADPRPRPPQEDVAAGRRRRRRRPWLIALAVVLVALLAVGIAAA VYVGGIARIIDQDTQRFDGGAFPAESGRPGAAGASAQQPTAPPPGMDADQAAEGAQGPVA PGADEQADEQALDVLLVGEDAGAEGRDSAGRSDTLMWVHVPGDRSEIQVMSIMRDMWVPI PGHGDHKVNAAYQYGGIPLTVATAENMFQARVDHVIAVDLAGFKGLVDALGGVSVDNPSA FVSTGGVDFPAGTVQMDGDKALAYARERYNLPRSDFDRVENQQRLVKAIVSAFLSRDTLS DPSRVQAAVEEFAPFLTLDDELDSGTLANLAWSLRDARDAPIVTSTVPSVGVGYTDTGED VVWPDWAAIARLGEGIRTGTLGEAVAP >gi|289557394|gb|ADCD01000058.1| GENE 22 24140 - 24619 315 159 aa, chain + ## HITS:1 COG:no KEGG:Mlut_08800 NR:ns ## KEGG: Mlut_08800 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 10 159 1 150 150 225 94.0 3e-58 MEPRRLRRLVPLLTAIALGATACAGRVATVEAAPHAADPACAPTMVAMPDVLGDLDLRPT DSQATAVWGDPAAVVLRCGAEVPGPTTDRCISVDGIDWVIRDEDENWRITTYGRDPAVEV LFGKDQASSDTVMVGLSSAVAQIESSGGCVSLQDATPVG >gi|289557394|gb|ADCD01000058.1| GENE 23 24648 - 25787 1017 379 aa, chain - ## HITS:1 COG:MT3059 KEGG:ns NR:ns ## COG: MT3059 COG1181 # Protein_GI_number: 15842537 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanine-D-alanine ligase and related ATP-grasp enzymes # Organism: Mycobacterium tuberculosis CDC1551 # 21 379 17 373 373 290 49.0 3e-78 MTATPAPEAAAGARPRVLLLFGGRSSEHPISCVTAAGVLHAADRQRWDVVPVGVARSGLW SHDELDVASFRLDGDVLPEVPEPEAPVSLRALPDGTVELTAADGSSLGPVDVVFPLLHGP WGEDGTLQGMFESLGLPYVGCGVLASAVGMDKHFMKVSFQAAGLEVGAWETITARDWARD PEAALARAGALAYPLFVKPARAGSSFGITRVTEPAGLRAAVEEARRFDPKVVVEAGIVGR EIECAVLDGHGSAAPRASLPGEIVVAHDEGETQFYDFESKYQDTGTTQLSCPAELPEEEI ERLRALAIRAFEAVDGSGLGRCDFFFTPDGRWVVNEINTMPGFTPISMYPAMWERTGLSY DDLISELLDLALERGVGLH >gi|289557394|gb|ADCD01000058.1| GENE 24 25784 - 26821 787 345 aa, chain - ## HITS:1 COG:Cgl1288 KEGG:ns NR:ns ## COG: Cgl1288 COG0240 # Protein_GI_number: 19552538 # Func_class: C Energy production and conversion # Function: Glycerol-3-phosphate dehydrogenase # Organism: Corynebacterium glutamicum # 6 341 3 332 332 268 48.0 1e-71 MSDPRTVAVLGAGSWGSAFARVLGLSTSPEPARASEIVMWSRRAEVAEAITERHENPEYL PGITLPTCVRAVTDAAEAVRDAGVVVVAVPAQHVRETLHAVRADLAPDAVVVSLVKGLER GTDARMSQVCAEELGLSPDRFAVVSGPNLALEIARGEPTATVVASASRATAERIAALTAG RTFRPYTNTDVVGVEIGGVVKNVIALAVGICDGQGLGDNSKASVITRGLAETTRLAVALG GDPATMAGLAGLGDLVATCASPLSRNRTAGRHIGTGLSAEEAVAAMSQTAEGIKSVSAIV HAARAHGVEMPISELMDRVVAGDVAVDRLAELLLARDLKSEGRTA >gi|289557394|gb|ADCD01000058.1| GENE 25 26818 - 27474 519 218 aa, chain - ## HITS:1 COG:ML0892 KEGG:ns NR:ns ## COG: ML0892 COG0204 # Protein_GI_number: 15827414 # Func_class: I Lipid transport and metabolism # Function: 1-acyl-sn-glycerol-3-phosphate acyltransferase # Organism: Mycobacterium leprae # 1 167 15 181 244 74 34.0 1e-13 MRALVRQVWEGTEHLPETGAILAVNHISEVDPLSVAHMVYNQGLLPTFLAKAELWKVPVL KQVLEATRMIPVERTRDGGRSLAAAREAVATGRAIIVYPEGTVTRDPDGWPMAGRNGAVR LALQTGAPLIPVGQWGIQELLPYGGRSLRVLPRKTARIRVGAPVDLADLRDRPVTAATLR EGTGRMMAAITDLVAELRGEPAPEGRWDPTTGARVTGA >gi|289557394|gb|ADCD01000058.1| GENE 26 27573 - 28901 1305 442 aa, chain - ## HITS:1 COG:CPn0571 KEGG:ns NR:ns ## COG: CPn0571 COG0766 # Protein_GI_number: 15618482 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine enolpyruvyl transferase # Organism: Chlamydophila pneumoniae CWL029 # 3 442 2 441 458 344 42.0 2e-94 MAKLLTIHGGKPLTGEVTVRGAKNLVPKAMVAALLGNSPSVLRNIPEIKDVDVVSSLLEI HGVSVEWDKETGRITMDPAGVKSALTAEIDAHAGDSRIPILFCGPLMHAIGEAFIPDLGG CKIGDRPIDYHLAVLRNFGAVVDKRPGGISISAPKGLHGAKLELPYPSVGATEQVLLTAV KAEGITELKGAAVEPEIHDLIAVLQKMGAIITVQTDRTIRIEGVSEMRGYNHIALPDRNE SASWASAALATRGDIYVRGAEQRDLTAFLNTYRKIGGEFDVVDDGIRFWHAGGDLNPLVL ETDVHPGFMTDWQQPLVVALTQAKGVSIVHETVYENRFGFTDALVRMGASIQLHRECLGS VPCRFGQRNFLHSAVISGPTPLHGVEFDIPDLRGGFSHLIAALTAEGTSTATGLEIINRG YEHFMAKLEGLGADVELTERDR >gi|289557394|gb|ADCD01000058.1| GENE 27 29074 - 29679 533 201 aa, chain - ## HITS:1 COG:MT3065 KEGG:ns NR:ns ## COG: MT3065 COG0066 # Protein_GI_number: 15842543 # Func_class: E Amino acid transport and metabolism # Function: 3-isopropylmalate dehydratase small subunit # Organism: Mycobacterium tuberculosis CDC1551 # 1 197 1 197 198 263 64.0 1e-70 MDKFTTHTGVGVPLRASNVDTDQIIPAVYLKRISRTGFEDALFAGWRQDPDFILNTEPFS GGTVLVAGSDFGTGSSREHAVWALKDYGFRAVISPRFADIFRGNSAKQGLVAAQVEQEDV ERIWKELENRPGTPVTVDLVTRTVECGDVTAPFQIDDDTRHRLLEGLDDIAVTLGHQDEI DAYEANRPAYKPTTLPARTAG >gi|289557394|gb|ADCD01000058.1| GENE 28 29683 - 32202 1489 839 aa, chain - ## HITS:1 COG:ML1685 KEGG:ns NR:ns ## COG: ML1685 COG0065 # Protein_GI_number: 15827896 # Func_class: E Amino acid transport and metabolism # Function: 3-isopropylmalate dehydratase large subunit # Organism: Mycobacterium leprae # 354 831 7 484 485 701 74.0 0 MNAGRTGCLRGASRRWRGRSSGLAGADELGEPRRGGDDGVRVQSARLTGEPLEGAGDRDR RDDAAAGAAHRRRHRGDPGLTLGQGLGPAAPPHRSEDGGCEDGAGQPLDEPLVVLPGQEH LRGGAGLHGHAGAHGDGVAQAPGPLRAGHAHAGVRLPTEHLGALSRGITQPQQHRAGGRR EPVLAGGGGELGQAGAQHVAALQVLAHHAVVREGGREPVQRGPRDPGGGDELGERGRAGL ERVEDRHRLVHHADTAGMPVERGADEVVLGGRAHGLGGHGVIVVVSLRGRPWVSARVMCD RAGRRRFRNVRQNLTIWNIAPRGREPPRRAPQWSVSTGAPRRATTDRCVSRKVRQMTTAT TRPRTLAEKVWDEHVVVRGEGEGSSRTPDLLYIDLHLVHEVTSPQAFEGLRLAGRPVRRP DLTIATEDHNTPTLDIDQPIADPTSRTQIETLRANCAEFGVRLHPLGDAEQGIVHVVGPQ LGLTQPGLTVVCGDSHTSTHGAFGALAFGIGTSEVEHVLATQTLPLKPFKTMAVTVDGAL RPGVTAKDIILAVIAKIGTGGGQGFVLEYRGEAIRNLSMEGRMTICNMSIEAGARAGMVA PDETTFAYLKGRPHAPEGADWDAAVEHWRTLATDEGAEFDAEVVIDADTLEPFVTWGTNP GQGVSLNDTVPAPEDFADPVAQEAARKALSYMDLAPGTPMKQVEVDTVFMGSCTNSRIED LRAFAEVVRGRRKAEGLRVMVVPGSARVRLQAMDEGLDRVFEDFGAEWRFAGCSMCLGMN PDQLSPGERCASTSNRNFEGRQGKGGRTHLVSPVVAAATAVLGRLASPSDLPALTPQEA >gi|289557394|gb|ADCD01000058.1| GENE 29 32368 - 33732 1234 454 aa, chain + ## HITS:1 COG:MT0337 KEGG:ns NR:ns ## COG: MT0337 COG1004 # Protein_GI_number: 15839709 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted UDP-glucose 6-dehydrogenase # Organism: Mycobacterium tuberculosis CDC1551 # 1 442 19 437 443 432 54.0 1e-121 MAELGFEVLGVDVDPAKIERLARGEVPFHEPGLPELLRTHVASGRLRFTTDVAEAARWAD VHFIGVGTPQKVGETAADLSYVDAAVASLAGAIDRDALIVGKSTVPVGTARRLAELVRTV RAEAGLPGEVELAWNPEFLREGFAVRDTLTPDRLVIGTHGPRAEGVLRRVYARQLAADTP WISTDLETAELVKVAANAFLATKISFINAFSEITENVGGDIGTLADAIGHDARIGRRFLN AGVGFGGGCLPKDIRALQARVSELGLDRTMRFLAEVDDINLRRRDRVVDLAVQVLSAARD GRVRRAEASGPAPTPASVQVLNGTRIAVLGVTFKPDSDDVRDSPALDVANRLYTAGADVR VYDPEGNANAAARFPRLDYVDSLDAAVDGVELTLLLTEWRQFREMDPDAVGARVASRLLI DGRNVLDVASWREHGWDVIGLGHRFDPERLLHSA >gi|289557394|gb|ADCD01000058.1| GENE 30 33760 - 34344 314 194 aa, chain - ## HITS:1 COG:no KEGG:Mlut_08710 NR:ns ## KEGG: Mlut_08710 # Name: not_defined # Def: thiamine-monophosphate kinase # Organism: M.luteus # Pathway: Thiamine metabolism [PATH:mlu00730]; Metabolic pathways [PATH:mlu01100] # 1 194 189 382 382 250 96.0 2e-65 GADLVHAQALPGGPRAAAAPGPGWAAGGLALLLTDRAELERRADALPAADRPSPQELARA VRAQLRPRPPLALGPAAVAAGLLTLMDVSDGLGKDAHRMAAATGGTGPAPAPWLDEAWLA EAAAPLRRVAALAGTSPEALVAGGGEDYGLLGLAWPETELPRGFTRIGRLVPAGARAPAG QRPLPESGWDPFGG Prediction of potential genes in microbial genomes Time: Thu May 26 07:38:14 2011 Seq name: gi|289557368|gb|ADCD01000059.1| Micrococcus luteus SK58 ctg1119142780308, whole genome shotgun sequence Length of sequence - 25173 bp Number of predicted genes - 26, with homology - 20 Number of transcription units - 17, operones - 5 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 11/0.000 + CDS 57 - 884 557 ## PROTEIN SUPPORTED gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 2 1 Op 2 . + CDS 982 - 1470 228 ## COG0526 Thiol-disulfide isomerase and thioredoxins 3 2 Tu 1 . - CDS 1424 - 2368 666 ## COG1475 Predicted transcriptional regulators 4 3 Tu 1 . + CDS 2253 - 2840 190 ## Mlut_23410 hypothetical protein + Term 2947 - 2975 -0.6 5 4 Op 1 . - CDS 2794 - 3183 59 ## 6 4 Op 2 . - CDS 3189 - 3443 134 ## - Prom 3595 - 3654 1.9 7 5 Tu 1 . - CDS 4578 - 5093 -81 ## - Term 5217 - 5259 12.0 8 6 Op 1 15/0.000 - CDS 5313 - 6260 811 ## COG1192 ATPases involved in chromosome partitioning 9 6 Op 2 3/0.000 - CDS 6335 - 7060 592 ## COG0357 Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division 10 6 Op 3 16/0.000 - CDS 7053 - 7637 501 ## COG1847 Predicted RNA-binding protein 11 6 Op 4 18/0.000 - CDS 7640 - 8638 957 ## COG0706 Preprotein translocase subunit YidC 12 6 Op 5 . - CDS 8644 - 9012 229 ## COG0759 Uncharacterized conserved protein 13 7 Tu 1 . + CDS 8770 - 9582 170 ## - Term 9241 - 9269 2.1 14 8 Tu 1 . - CDS 9440 - 9577 222 ## PROTEIN SUPPORTED gi|239918807|ref|YP_002958365.1| LSU ribosomal protein L34P 15 9 Tu 1 . + CDS 10004 - 11467 1455 ## COG0593 ATPase involved in DNA replication initiation + Term 11485 - 11533 6.2 16 10 Tu 1 . + CDS 11875 - 12120 56 ## 17 11 Tu 1 . - CDS 12566 - 14704 1052 ## 18 12 Tu 1 . + CDS 14562 - 15125 430 ## COG5512 Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives 19 13 Op 1 24/0.000 + CDS 15496 - 17646 2106 ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit 20 13 Op 2 . + CDS 17868 - 20408 2696 ## COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit 21 13 Op 3 . + CDS 20405 - 20905 299 ## Mlut_00070 hypothetical protein + Term 20915 - 20964 15.8 + TRNA 21006 - 21079 82.3 # Ile GAT 0 0 + TRNA 21281 - 21356 88.2 # Ala TGC 0 0 + Prom 21283 - 21342 79.8 22 14 Op 1 . + CDS 21592 - 22392 602 ## COG1738 Uncharacterized conserved protein 23 14 Op 2 . + CDS 22470 - 22697 214 ## Mlut_00680 hypothetical protein 24 15 Tu 1 . - CDS 22731 - 23378 488 ## COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold 25 16 Tu 1 . - CDS 23594 - 24829 1058 ## Mlut_00700 hypothetical protein 26 17 Tu 1 . + CDS 24470 - 25172 179 ## COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family Predicted protein(s) >gi|289557368|gb|ADCD01000059.1| GENE 1 57 - 884 557 275 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 [Streptococcus pneumoniae SP6-BS73] # 1 254 49 303 306 219 46 2e-56 PGLPGGCAGPELMANLEAQARRFNTEVVYDDVVQADLTSNPKVLTLGDGTQLRTHAVILT TGSAYRKLGVPGEERLSGHGVSWCATCDGFFFREQEIAVVGGGDSAMEEALFLTKFASKV TVLVRKDELRASKVMAHRAMENEKIEFRWNTEVTEVTGDDKVNTLRLRDTRTGEASTLDV TGLFVAIGQDPRTDLVQGQVELTEHGTIRIDHPSSRTSQPGVFAAGDVTDHTYRQAITAA GSGCVAAQDVEHYLATVADVEEAAPAGPESDAVPA >gi|289557368|gb|ADCD01000059.1| GENE 2 982 - 1470 228 162 aa, chain + ## HITS:1 COG:ECs4714 KEGG:ns NR:ns ## COG: ECs4714 COG0526 # Protein_GI_number: 15833968 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Escherichia coli O157:H7 # 4 100 24 120 127 117 49.0 1e-26 MSTITVTDADFDQKVLQSELPVLVDFWAEWCGPCRMLGPVLEDMAVEHEGKAVIAKLNVD ENPAIAARYGVTSIPLVVGFQNGEKVVESVGAKPKGRAGEGVLGPARLSPSPTHHDGPAT REGGGAVARRSSGPAAGARGRRPREVRIRTSCPSPCRPRRPE >gi|289557368|gb|ADCD01000059.1| GENE 3 1424 - 2368 666 314 aa, chain - ## HITS:1 COG:ML2706 KEGG:ns NR:ns ## COG: ML2706 COG1475 # Protein_GI_number: 15828464 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Mycobacterium leprae # 40 301 60 330 335 258 56.0 1e-68 MPTVKAPSKRATSATSSRKEPADSTADPVATEGTVSADIAVLREIPVGDIHPNPRQPREV FDEDHMAELVTSIREVGILQPIVVREVDGPTPYELIMGERRWRATQKAGLDTIPAIVRQT PEQDLLRDALLEDLHRSQLNPLEEAAAYQQLMEDFACTQEELSQRIGRSRPQISNTLRLL KLPPLVQRRVAAGTLSAGHARALLGLTDPSDMERLAQRIQSEGLSVRATEEAVAQLQGGL RPGRTPRRSTDDARHERLDHYATALTSRLDTAVKITLGARKGRIAIDFTTVEDLNRIMDL IQDGEDGKGKGKKS >gi|289557368|gb|ADCD01000059.1| GENE 4 2253 - 2840 190 195 aa, chain + ## HITS:1 COG:no KEGG:Mlut_23410 NR:ns ## KEGG: Mlut_23410 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 195 1 195 195 243 94.0 2e-63 MSADTVPSVATGSAVESAGSFLDDVAEVARLLGAFTVGMAGRPLVGRAAGASSESAEKNT STGRCAGREARFDEVGPAFVADVAFRPVAAVDFPACVVRPAVFRCEADGAGSLDSPGVSV VAVLRVDVVVASAAAAAFGPLFTGTAECLGEEASAFSSGASTVLWIRAPRPRPRPPRRLV FNGSSCSEWVCDQCR >gi|289557368|gb|ADCD01000059.1| GENE 5 2794 - 3183 59 129 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MILIPPARRRGLAFHVKRVNLEREHEEVLRIAAAPFRSAPTRSVPRETLTLAAGAVRAPA FCHPGPMRTSHPRTEARTSPRPLHVSGPRAPPGGQGQSTLRSVFPPPGTIETRPLTYTDR RPTHCRRTR >gi|289557368|gb|ADCD01000059.1| GENE 6 3189 - 3443 134 84 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVKQRSIRELRGCAEALTAKRRVGRAHPFDDSSVHITPRGSGTSASLLVRHCASDEAHHH AGSQRSEYRPHGGPIGRGANEKQT >gi|289557368|gb|ADCD01000059.1| GENE 7 4578 - 5093 -81 171 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGRGARGGLLPSDTLPSPSLGRPLRRRPGAPVARPGCSRGRRRTNSRGERHGGGAATAAV RAGGARCVEVLREGCATRGERPGRRARPCRVWSVPPPSPGCAAASRMQPASRPGAVKWVP PLPHGQTSSPSVTCRESGPERSTSRGVAARRAAGLPSACARADVSGDGGLL >gi|289557368|gb|ADCD01000059.1| GENE 8 5313 - 6260 811 315 aa, chain - ## HITS:1 COG:Cgl3035 KEGG:ns NR:ns ## COG: Cgl3035 COG1192 # Protein_GI_number: 19554285 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Corynebacterium glutamicum # 42 308 29 290 307 294 58.0 1e-79 MAQEQESRGGAWRALRQKWTGRTAEKGGADAEEPARLQRRRLTRPDRTRVFTTSNQKGGV GKTTTTVNLAAALARAGMRVMVVDIDPQGNASTALNIPHTGDVASVYDVLLGEMEIQDVV QDAPDVDGLQVVPATIDLAGAEIELVSLVAREQRLSRALEAYTAWREEDGQERLDYVFID CPPSLGLLTVNAFVAAEEVLIPIQAEYYALEGLSQLLKNVQMIQKHLNPRLQVSTILLTM FDARTNLAVQVAEEVRTHFPEQLLNTAIPRNVRISEAPSYQQTVLTYDPASAGAVAYREA AAEIAGRGAPTALKG >gi|289557368|gb|ADCD01000059.1| GENE 9 6335 - 7060 592 241 aa, chain - ## HITS:1 COG:Cgl3036 KEGG:ns NR:ns ## COG: Cgl3036 COG0357 # Protein_GI_number: 19554286 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division # Organism: Corynebacterium glutamicum # 39 236 5 205 209 170 48.0 3e-42 MTERGSAYERRPGLDPQDRGDRPAPVGQPAPPLTDALRPAAVELFGEALPRAEAYVAHLA DTGIEWGLIGPREAPRLWERHVLNCAVVEELLPQGALVADVGSGAGLPGLCLALARPDCQ FLLIEPLERRVEWLDMVVADLGLENVDVIRGRAEQVSGNLDVDVVTARAVSALKTLVPLT MPMLQGAGELLAIKGRSAADEIAAARKVLRKYGGAEPEILTVGEGLLPETTTVVRVSARP R >gi|289557368|gb|ADCD01000059.1| GENE 10 7053 - 7637 501 194 aa, chain - ## HITS:1 COG:MT4039 KEGG:ns NR:ns ## COG: MT4039 COG1847 # Protein_GI_number: 15843554 # Func_class: R General function prediction only # Function: Predicted RNA-binding protein # Organism: Mycobacterium tuberculosis CDC1551 # 14 193 10 187 187 89 44.0 4e-18 MSAENVTPAPEAEDAVVETPAGQGSRVAEQDDAAVSEAVRRLEEEGDVAADYVEELLDIA DLDGDIDIEVRDGRTYVSVVSEDHDERLDGLVGPDGRTLEALQELVRLAVLAATGHRSRL ILDVCGHRERRNVALRTAAQAAVERVRDGEGPVHLEPMGAYERKIVHDVVADAGLTSESE GEGARRHVVISADD >gi|289557368|gb|ADCD01000059.1| GENE 11 7640 - 8638 957 332 aa, chain - ## HITS:1 COG:MT4040 KEGG:ns NR:ns ## COG: MT4040 COG0706 # Protein_GI_number: 15843555 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YidC # Organism: Mycobacterium tuberculosis CDC1551 # 13 284 17 299 366 124 29.0 2e-28 MFEAILAPFRWLMSWLLGAFHSVLDFAGLPADSGWTWALSILLLVVLIRTLLIPLFVKQI KAQRAMQAIQPELQKLQAKYKGKKDQLSRQAMAMEQQALMKEHKANPFAACLPLLVQMPF FFALYQVLLGARGAAERGEAMDALSAEQIRSFEGSTIFGARMSDTFMNSLGAPGSTPVIV TAIVLILLMSGSMFFMQKMLMTKNMTQQALTGPMMQTQQVMLYAMPLIFGIGGINFPIGV LLYWTYSNFWAVGQQWWIIRNNPTPGSLAEKELNERRAAKGLPPVGQKVSNAEATPSSAH TQAGRGGAVLNGEVVRQSGQRVQPQRKNRRRK >gi|289557368|gb|ADCD01000059.1| GENE 12 8644 - 9012 229 122 aa, chain - ## HITS:1 COG:PM1164 KEGG:ns NR:ns ## COG: PM1164 COG0759 # Protein_GI_number: 15603029 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Pasteurella multocida # 22 93 6 77 86 98 62.0 3e-21 MTVTPSPFVVLEPSREWGPLRALPSALLAGLLTVYRAVVSPLYGPVCRFFPSCSAYGLEA VHVHGAVKGSWLAARRIGRCHPWNDGGVDPVPPGHRRWPPGRQPRILALNHPPIPPDLPQ ED >gi|289557368|gb|ADCD01000059.1| GENE 13 8770 - 9582 170 270 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MAPADAPRGEPGALHRAVHVHGLQPVGGAAGEEPAHGSVQRGDHGPIDREQSGQQGGRQR AQRPPLTGGLEHDEGRGRDGHLRVLRGGGQVRLQGLAERADGLAAQQRVVRLGGGRQRAD LHQNRQVAQRGQAHLIRDDGAQPPLHPVAGHRVPHGFGHDEPGPRPRGARRRGPGLVGVR GDAHHDGAPTRAGAGATEVTELRGRADAAVTGQHGARRPWTDVLRRTARRGSCRGERTGW RGRRGCACGHGSRACGHDGGYWAGTCAWSL >gi|289557368|gb|ADCD01000059.1| GENE 14 9440 - 9577 222 45 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|239918807|ref|YP_002958365.1| LSU ribosomal protein L34P [Micrococcus luteus NCTC 2665] # 1 45 1 45 45 90 97 1e-17 MTKRTFQPNNRRRARKHGFRARMRTRAGRAILSARRGKNRAELSA >gi|289557368|gb|ADCD01000059.1| GENE 15 10004 - 11467 1455 487 aa, chain + ## HITS:1 COG:MT0001 KEGG:ns NR:ns ## COG: MT0001 COG0593 # Protein_GI_number: 15839373 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA replication initiation # Organism: Mycobacterium tuberculosis CDC1551 # 6 485 50 506 507 432 52.0 1e-120 MGFVYLAQPQGLIGNTLLLAVPNETTRETLQGTQVADALTDALTKEFREEILLAISIDAN LQPPRTPSSEARRSSLAGGPAAAAAPDVELPPAATAATSRRAVAEELPGFRIEPPADVAP AAPAAPNGNGKPTPAPPSTSAETSRLNDRYHFETFVIGSSNRFAHAAANAVAEAPAKAYN PLFIYGESGLGKTHLLHAIGHYARRLYPGLRVRYVNSEEFTNDFINSIRHDEGASFKQVY RNVDILLIDDIQFLADKEATVEEFFHTFNTLYNNNKQVVITSDLPPKQLSGFEDRLRSRF EWGLITDIQPPDLETRIAILRKKAEAEGLVAPPEALEYIASRISTNIRELEGALIRVTAF ASLNRQTVDIELAEHVLKDLITDETAHEITPELILHATGEYFNLTLEELTSKSRTRTLVT ARQIAMYLLRELTEMSLPKIGQVLGGRDHTTVIHADRKIRELMAERRTIYNQVTELTNEI KRKQRGA >gi|289557368|gb|ADCD01000059.1| GENE 16 11875 - 12120 56 81 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MHTPNERASTRFPQPDPHADAAERRSPQDPHPLPLLLIPLERSRQATSSPPPRTELSASR ARAAPVCSESLESHRCHSSTT >gi|289557368|gb|ADCD01000059.1| GENE 17 12566 - 14704 1052 712 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MAPARPAPVPRARSGASPRSRAASRTRRSCTSARSGRSGSNGAGVSAIGAALAPGLADVP LHGGRGGHGLGALRVLADEHAVGRELLGDVLERGGRDDHLLGPVHERGEAAATGGVELRE HVVQDQDGAGVGVRVVGHEHVVGRHAQGERQRPRLPVGGVAARGRRAQEEGELVPVRAHQ GERPCPLLLPLGLERPAHVRGQVRHGRDLRVGAAGQRDGGLVGVGRRLGAVGQRGVHLLE GAGQQAQHVQAAVEQAGAGGAEVLVPDGEGRVLLGAPAARAAARLEQGVALAQHAFVVGG GLTEGRTQLHHELVQETTAATGLPRHEAQVLRGEDHGAQDPEALLRPHGGAAVDGHPVGP ARQDLQLEGDGAGPAVHASGDPGPVPAEAHELRVRADPVRLLGAEVADRLHEVGLAHPVG PEQHRGPRRQLQVGPAVGPEVRDGEVGQVHGSVQPPASGDAHRHHEVAVVGDDAVLLVHA GEQGGLGRGREREAHLRLVHHGQALGEVGRVERHGDVLALERARHGLVGARVVTGAGVQG DLAVREHHAQGGVALGHEGHAAGRLDQGGGVHHGLDGAGLGEERADLGVLAVHEHGGGAA AAGGEAHEVGGLTEQDLQVAAGAEGLGDLGERARLDEQRRREGRVRRGPADLLHGQSVAV RSQEGHGVALDLHLHGGEDRQGVVFGGGDGDLGDGVGERGAVHGARGGRQLG >gi|289557368|gb|ADCD01000059.1| GENE 18 14562 - 15125 430 187 aa, chain + ## HITS:1 COG:ML0004 KEGG:ns NR:ns ## COG: ML0004 COG5512 # Protein_GI_number: 15826869 # Func_class: R General function prediction only # Function: Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives # Organism: Mycobacterium leprae # 60 187 60 189 189 108 49.0 7e-24 MAETPAPFEPDRPDLALVQLRRVREAARERGEAPLRARGTGAGLAGAMAGTTSAGRERQD RRRPFGGADRDPATVSTVFGRLIRDRGWSTPVAVGSVLTRWAELVGPEIALHCRPESFED SVVRVRTSSTAWATQLRLMSPVLLQRFDEALGPGVVTRIDVAGPQAPSWRKGPRTVRGGR GPRDTYG >gi|289557368|gb|ADCD01000059.1| GENE 19 15496 - 17646 2106 716 aa, chain + ## HITS:1 COG:Cgl0005 KEGG:ns NR:ns ## COG: Cgl0005 COG0187 # Protein_GI_number: 19551255 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Corynebacterium glutamicum # 41 716 8 684 684 793 61.0 0 MPENPAEEPTAASAAPNPEAVPDAVGQPEAPVKDRKVPGEYGASAITVLEGLEAVRKRPG MYIGSTGPRGLHHLVYEVVDNSVDEALAGYATGIDVTLQADGGVRVADDGRGIPVDLHPT EGRPTVEVVMTILHAGGKFGGGGYAVSGGLHGVGISVVNALSRRVDTEVRRQGHVWRMSF ADGGVPQGELVKGEAMDATGTVQTFYPDPEIFDSIEFDYETLRARFQQMAFLNRGLRITL TDERVQESNEVVDDEIAGEGAAGEDVAENGLAEEAEQEPQRRSVTYLYENGLLDYVQHLN SAKKVEYVHDDVIAFEAEDVSDGRSMAVEVAMQWTSAYSESVHTYANTINTHEGGTHEEG FRAALTSLVNRYAREKEILKPKEDNLTGEDIREGLTAVISVKLSEPQFEGQTKTKLGNSE ARGFVSKAVTDHLGDWFERNPGPAKEIIRKAIMASHARLAARKARDNARRKSPLESFGMP GKLADCSSKDPERCEVYIVEGDSAGGSAKQGRNPETQAILPLRGKILNVERARLDKALGN AEIQSMITAFGTNIGEEFDISKLRYHKIVLMADADVDGQHITTLLLTVLFRYMRPLIEAG HVFLAQPPLYRIKWSNAPHDYVFSDEERDAAVEAGLAKGWRYPKDNGVQRYKGLGEMNYQ ELWDTTMDPEHRTLLQVTMEDAAAADAVFSMLMGEDVESRRSFIQQNAKDIRFLDV >gi|289557368|gb|ADCD01000059.1| GENE 20 17868 - 20408 2696 846 aa, chain + ## HITS:1 COG:Cgl0012 KEGG:ns NR:ns ## COG: Cgl0012 COG0188 # Protein_GI_number: 19551262 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit # Organism: Corynebacterium glutamicum # 1 845 21 856 856 941 57.0 0 MKRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPDRAFNKSARVVGDVMGN YHPHGDTAIYDALVRLIQDWVQRYPLALGQGNFGSPGNDGAAAQRYTETKMAPLAMEMVR DIDEDTVDMQDNYDGKQQEPVVLPARYPNLLVNGSSGIAVGMATNIPPHNMREVAAGVQW YLEHPEATREELLEALLARVHGPDFPTGAQILGRKGIEEVYRTGRGPITMRAVVNVEEIQ GRTCLVVTELPYMTNPDNLAAKIAEMVRDGKINGIADMRDETSGRTGQRLVIVLKRDAVA KVVLNNLYKHTELQSNFSANMLALVDGVPRTLSLDGFVHHWVKHQIDVIVRRTAFRKRKA EERAHILRGLLKALDMLDEVIATIRRSASADVAREALKELLDIDDVQAQAILQMQLRQLA ALESQKIQDEYDDLMAKIAEYNRILESPQRQREVISEELAEIVAKHGDDRRTEIMAGFDG DMSIEDLIPEEEMVVSITRGGYVKRTRIDQYRSQARGGKGVRGATLRGDDVVEHLLTVST HHWLLFFTNFGRVYRIKTYELLEAGRDAKGQHVANLLAFQPDERIAQIQPLVDYGRAPYL VLATRGGLVKKTPLLDYDTNRTAGLIAIKLREGDELVSARVVSPDDDLILISHKGQSLRF TATDEALRPMGRATSGVTGMKFRDDDSLLTMDVVEEDGYVFTVTDGGFAKRTHVDEYRLQ NRGGLGIKVAKLVDDRGELAGGLVVREDQEVLVVMASGKVVRSAVAGVPAKGRDTMGVIF AKPDKRDRIVAVTLNNEQEMEAKADAEAEAGPDVPLDADIDPTDPVAAPEDALTQDAGEG ADGGEQ >gi|289557368|gb|ADCD01000059.1| GENE 21 20405 - 20905 299 166 aa, chain + ## HITS:1 COG:no KEGG:Mlut_00070 NR:ns ## KEGG: Mlut_00070 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 166 1 166 166 238 99.0 5e-62 MSTSASSRSGQGRSTGKAAEPRSGRPVRKASGSSQEDLVRAVPKAKVRRARLVLTRVDPW SVLKLAFLLSVALGILTVVAAVALYSLSDVLGIFDRVNDVIGTVLGSEAGRYTVASLAPL STVTSLATVLAVVNVILLTALATVAALLYNLCASLVGGLGVTLTDD >gi|289557368|gb|ADCD01000059.1| GENE 22 21592 - 22392 602 266 aa, chain + ## HITS:1 COG:Cgl0234 KEGG:ns NR:ns ## COG: Cgl0234 COG1738 # Protein_GI_number: 19551484 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Corynebacterium glutamicum # 13 242 12 243 250 156 39.0 5e-38 MDGPVNTTIEPQPPVRPASGQGTPAYARVPASYYDIFVGVFIALLILSGVTAAKLFYGPT VPVVSDLFYDGGPLIFDGGAFLFPFAYIVGDILAEVYGWRRARRAIVLGFAMLVLAALTY TVVSWTTPVEGFEVWDQALAPMLRITVAGFVAFLVGSLLNASIVVRLKERMKERHVAFRL ILSTVVGQFFDTLIFCTIAYAGTISLLELANYTVTGFAYKTLVEILIVPVTLLVIRALKR REPTYRAPGFEIHRDDDPALAPAASR >gi|289557368|gb|ADCD01000059.1| GENE 23 22470 - 22697 214 75 aa, chain + ## HITS:1 COG:no KEGG:Mlut_00680 NR:ns ## KEGG: Mlut_00680 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 75 1 75 75 109 96.0 3e-23 MGKDLFEHEQQQTLSREQAAARLRDLADQLSRQNEVRVEHGGRDVVVTVPDRVGLEVELE VEEGGDAELEITLSW >gi|289557368|gb|ADCD01000059.1| GENE 24 22731 - 23378 488 215 aa, chain - ## HITS:1 COG:MT0810 KEGG:ns NR:ns ## COG: MT0810 COG2220 # Protein_GI_number: 15840201 # Func_class: R General function prediction only # Function: Predicted Zn-dependent hydrolases of the beta-lactamase fold # Organism: Mycobacterium tuberculosis CDC1551 # 5 215 3 212 212 117 38.0 2e-26 MSTTLTLFGHSAVRLEKAGRRLAFDPGAFSDAAVLDGADAVLVTHGHPDHVVPEQLARAV AGTEAHVWAPRDLTGPLAEAGLDAGRVHTAVPGETFEAAGFRVEVLGGEHAVIHAEVPRP VNVSYLVDGAVLHPGDSFTVPDADVEVLLLPAAAPWLRIAEVVDQMRAIAATHTRPIHDG ILSEDGKGVVDGVLSGLAEGVTDYRRLAPGEPWTF >gi|289557368|gb|ADCD01000059.1| GENE 25 23594 - 24829 1058 411 aa, chain - ## HITS:1 COG:no KEGG:Mlut_00700 NR:ns ## KEGG: Mlut_00700 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 411 1 411 411 463 98.0 1e-129 MARKTLHDEIQHDGGTNAFVARQAENLRHWAAPKVESTRAWSEVAAAYGLIGGSAAAEEG RRKAQDAKKEYGPVVERGARKAGEAVAHQYGLLAPAVAKGVDTVQDFLEHLQAQAQDAGH EVQQQFAAARKDAEKAAKKGRRRGGRKAKQLRRDGRQAAKGLRKDAKKAAKGARKDAQRS AALFSDRAGQAKDAAAAGGLTLAGLLATGLSALQEQGGKVAPQVQARLADAGDYAQRRKE EVLPVAAARLADGAAHARKTAHDVEVPDALEQALIKLTGDKAIVKRLRKGAEQYAGAAEK DLNRAAGRRASRSGGRAWIVAGMAAAAAGAGYALWRLTKPVQDPWTAPVPGPITANIPVV EANNPYAQQQKVVAEAGSAAAGQGVRVDTAAPNPVAAANAKVLGVQPGQQR >gi|289557368|gb|ADCD01000059.1| GENE 26 24470 - 25172 179 234 aa, chain + ## HITS:1 COG:Cgl0034 KEGG:ns NR:ns ## COG: Cgl0034 COG0652 # Protein_GI_number: 19551284 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family # Organism: Corynebacterium glutamicum # 180 225 14 59 190 65 63.0 7e-11 MAGVLCLGLQVLEEVLDGVHALGDGRGQQPVLVRDGLAGLPRAALDHGAVLLLGVLGLAA ALLGRGGAADQPVGRGHLAPGAGGLHLRGGPVAQVLRLACDERVRAAVVLDLVVQGLASH VMPPVGSGWSLNAVVLEAQPSGRPPQWHGSRHAGSAYADRGRSRPRTAGSGRPAAADGTM GRMANKTHTATIHTNHGDIVVELFGNHAPKTVKNFVGLATGEQEWTHPQTGEKN Prediction of potential genes in microbial genomes Time: Thu May 26 07:39:40 2011 Seq name: gi|289557355|gb|ADCD01000060.1| Micrococcus luteus SK58 ctg1119142780287, whole genome shotgun sequence Length of sequence - 11335 bp Number of predicted genes - 11, with homology - 9 Number of transcription units - 5, operones - 3 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 192 - 1322 987 ## COG1814 Uncharacterized membrane protein 2 2 Op 1 . - CDS 1224 - 1493 121 ## 3 2 Op 2 . - CDS 1501 - 2208 385 ## Ndas_1076 ABC transporter membrane protein 4 2 Op 3 . - CDS 2255 - 3184 311 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 5 2 Op 4 . - CDS 3278 - 3772 187 ## 6 3 Op 1 19/0.000 + CDS 3687 - 4796 593 ## COG4585 Signal transduction histidine kinase 7 3 Op 2 . + CDS 4960 - 5400 306 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 8 4 Op 1 39/0.000 - CDS 5780 - 6436 573 ## COG0074 Succinyl-CoA synthetase, alpha subunit 9 4 Op 2 . - CDS 6464 - 7633 1010 ## COG0045 Succinyl-CoA synthetase, beta subunit 10 4 Op 3 . - CDS 7489 - 10377 1493 ## COG0210 Superfamily I DNA and RNA helicases 11 5 Tu 1 . + CDS 10680 - 11334 470 ## Bfae_02910 predicted membrane protein Predicted protein(s) >gi|289557355|gb|ADCD01000060.1| GENE 1 192 - 1322 987 376 aa, chain + ## HITS:1 COG:Cgl2230 KEGG:ns NR:ns ## COG: Cgl2230 COG1814 # Protein_GI_number: 19553480 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Corynebacterium glutamicum # 14 372 5 354 357 338 54.0 1e-92 MSPAHTATPAARPEPTREQVRRWRRYLADEIAEGQIYRDIAARKDGVDRDILLGLAEAER RHEQHWRALLGEHAENPPRPSLHRVLLRWLARIFGSVFVLALAQRAESDTPYAKDQDAPE GMAADEAIHEEVVRGLAARGREQLAGNFRAAVFGMNDGLVSNLALVMGIGATGVAPSVVL FTGVAGLLAGALSMAAGEYVSVRSQRELLEASSPTQITLEAAQHLDLDHNELKLVYLARG MTPEDAEHRALERLGYLTCDCNPQFSARPDGSQGPVDHSDSFAEIGSAWSASLSSFAFFA SGALIPILPYIFGMSGLWALGLAAAMVGAALLFTGGVVGLLSGSSPLARGLRQLAIGFGA AAVTYVLGLLFGANVG >gi|289557355|gb|ADCD01000060.1| GENE 2 1224 - 1493 121 89 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MAAAFRSHDTEQSDTATAGRPTAVGALFGALEEPSRREDGEDRRLFSWPGRQTALPASAH VRAEEQAQHVRHGGGAEADRELAQAPGQR >gi|289557355|gb|ADCD01000060.1| GENE 3 1501 - 2208 385 235 aa, chain - ## HITS:1 COG:no KEGG:Ndas_1076 NR:ns ## KEGG: Ndas_1076 # Name: not_defined # Def: ABC transporter membrane protein # Organism: N.dassonvillei # Pathway: not_defined # 1 234 1 241 242 178 53.0 1e-43 MFAIARSEMTQLVRNRLVAASSLFVPLAFSAVLIFNRENFGGTAVAAALILVTVTAMGTY VTATTTLASRRQNLFLKRLRSTSAKDASILSGLVLPIALVNLVQAGVIVAILSVVGTPPV GVVAVVAAVVVLELMFVGAAIATAGLTNSPDHAQVTTLPLFVVALGAAMWVGLTGTEELA GVKRLLPGGAVTELIVEGWSGMALHETVSLLLPSLAFVVAAFAMAKSTFRWEPRA >gi|289557355|gb|ADCD01000060.1| GENE 4 2255 - 3184 311 309 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 26 304 7 298 311 124 29 3e-28 MQNTTLRTTPAAPTADGVRSETVVEMKDLRVDYGDFTAVDGIDLEIRRGEFFGLLGTNGA GKTTTIEVMEGHRVPTAGSVRVLQQDPSDRTLRRRVGIMLQESGFAPDLTVRETLALIGR LTRRDDDVDRVLDLVDLRRRRDTRTGQLSGGEKRRLDFATAIFGSPELIFLDEPTTGLDI EARDALWHVVDRLRDEGATILLTTHYLEEAQERADRIALMHSGRIHRQGTVAELTSAFPS TISFRLNGELTVPFEDATTAPGGAVTIPTTNLQEDLYRLLVWSRSRDVELEGLNVGAEGL ESLFRALNA >gi|289557355|gb|ADCD01000060.1| GENE 5 3278 - 3772 187 164 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MAATPKTASRTKLVLLRSLRVSDVCSEVMGTPCSVSAWIGCPSGGHLRLSLDGLVAGREP HSGRDDGDHHADDQPGGVGGSARGDPGGDLRGQDLGDGQVVQRQHDAERGGTEEQDECDG PDGLHGSLPCPLSMVFLSSSAPIGGVADSIGTTSTLPTCLLFCQ >gi|289557355|gb|ADCD01000060.1| GENE 6 3687 - 4796 593 369 aa, chain + ## HITS:1 COG:CC1149 KEGG:ns NR:ns ## COG: CC1149 COG4585 # Protein_GI_number: 16125401 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Caulobacter vibrioides # 61 348 93 376 399 95 31.0 2e-19 MTSEHTSETRRLRSRTSFVLLAVFGVAAIVALLTSAVEPWPPLVLAPGLIAGLWLLSQWH REVAAPTRWAVLALGTLTWALSALWELTPLGALAFALAGALEVMWSRRTRAVMTLLTLTV GAAVGVLVVVTDPQALWVYVGMGALLTGAACVTIPDSRASFDLMRLQDQRAEQERAASVD AERLRFSQDLHDIQGHALHVVKLKIAVAQRLLSTDTEAARRELDEAQQTLRQTMAETKAL AQDGHTLTLRGELANSVSLLKAAGITVTTDDDGGPRTEEFEHVAGVVIREGTTNILRHSD ARRVDISLAPGHVVMSNDGVLAVPAEDHRGGLENLRSRLAGVGGRLDVSCGDGRFTLGAR WEADEEESV >gi|289557355|gb|ADCD01000060.1| GENE 7 4960 - 5400 306 146 aa, chain + ## HITS:1 COG:Cgl0925 KEGG:ns NR:ns ## COG: Cgl0925 COG2197 # Protein_GI_number: 19552175 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Corynebacterium glutamicum # 1 146 57 203 203 117 46.0 6e-27 MEMPGLDGVAAVATLRETHPDLPVVMLTRHARPGVLRRALKAGVTGFVTKSAEPEEIADV IRRVNSGQRWIDPDTTARAISDDCPLTDRELDALRATGEGYSVARIAQQLHLAEGTVRNY LSSAMQKTQTSTRHDAARFARRHEWL >gi|289557355|gb|ADCD01000060.1| GENE 8 5780 - 6436 573 218 aa, chain - ## HITS:1 COG:MT0979 KEGG:ns NR:ns ## COG: MT0979 COG0074 # Protein_GI_number: 15840376 # Func_class: C Energy production and conversion # Function: Succinyl-CoA synthetase, alpha subunit # Organism: Mycobacterium tuberculosis CDC1551 # 1 210 4 208 303 286 77.0 3e-77 MSIYLNKDSKVIVQGITGGEGTKHTRLMLKAGTNIVGGVNARKAGTTVSHEDKDGNAVEL PVFGTVKEAMEKTGADVSVAFVPPAFAKDAAIEAIEAEIPLLVVITEGIPVQDSAEFFAL SQSKTGEDGKPKTRIIGPNCPGIITPGEALAGITPATITGTGPIGLVSKSGTLTYQMMYE LRDFGFSTAIGIGGDPVIGTTHIDALEAFEPTRTPRPS >gi|289557355|gb|ADCD01000060.1| GENE 9 6464 - 7633 1010 389 aa, chain - ## HITS:1 COG:MT0978 KEGG:ns NR:ns ## COG: MT0978 COG0045 # Protein_GI_number: 15840375 # Func_class: C Energy production and conversion # Function: Succinyl-CoA synthetase, beta subunit # Organism: Mycobacterium tuberculosis CDC1551 # 1 387 1 387 387 493 70.0 1e-139 MDLYEYQARDLFEAHGVPVLAGIVAQTPDEAKAAAEKIGGVTVVKAQVKVGGRGKAGGVK VAKTADEAYEHAKAILGMDIKGHTVHQVMIAQGADIAEEYYFSVLLDRANRTYLAMCSVE GGMEIEQLAEERPEALAKVPVSALTGIDAETAQKIVTEAGFPEELRADVAEVIQKLWEVF EKEDATLVEVNPLVKTGDGTILALDGKVSLDDNAQFRHEGHAALVDERTEDPLEAKAKAN DLNYVKLDGQVGVIGNGAGLVMSTLDVVAYAGEQHGGVKPANFLDIGGGANAEVMANGLD VILGDEQVKSVFVNVFGGITACDQVANGIVKALEILGDTATKPLVVRLDGNAVEEGRRIL QEANHPLVTLAATMDEGADKAAELAHSAN >gi|289557355|gb|ADCD01000060.1| GENE 10 7489 - 10377 1493 962 aa, chain - ## HITS:1 COG:Cgl0831 KEGG:ns NR:ns ## COG: Cgl0831 COG0210 # Protein_GI_number: 19552081 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases # Organism: Corynebacterium glutamicum # 58 645 7 604 763 568 54.0 1e-161 MADLFSALGRTPLNLDRTRRPADPETALPGLVPPAVTRVAADPEAWGEDARPAAPAHTPE SLVAGLNPQQAAAVTHTGAPLLIVAGAGSGKTRVLTHRIAWLLATGRARPHEILAITFTN KAAAEMRERVAGLIGPTAQRMWISTFHSSAVRLLRNEAANIGLKSTFTIYDSADSLRLVT TVAKQHELDPKRFAPKALLNRISSLKNELVEADDYAATVAEGDPWGRAVAAVYRGYTARL RQANALDFDDLIGMTVHMFEAFPRVLDNYRRRFRHVLVDEYQDTNHAQYRLIRLLAGPAG DPEGVETPGGELTVVGDSDQSIYAFRGADIRNIVEFEQDFTDAVTIKLEQNYRSTQTILD AANAVIERNPDRRPKRLWTAEGEGPAIVGYAAENESAEAEWIASTIDRLQDEDGIRPADV AVFYRTNAQSRALEERLVTRGIPYRVIGGTRFYDRKEIKDALAYLRVIVNPDDDVNVRRI LNEPKRGIGDRAEGAVAAWAERNRSTFSAALRDAENAPGMAARSLKAVRGFVQMMDDLGQ VAESAGPATVLEAVLEQSGMLAALRESEDLQDESRADNLGELVAVVRSFETTHPDGTLSD FLEQVALVADADQLPTAPDVEGEALAEQQGQVTLMTLHTAKGLEFRRVPDGHGARGVPAR PLDDGREGARGGASPGLRGPDARPPSPVPDARRGTLAVGPAPVQPAQPVPRGDPGGAHRL GAGGHHALGRLVEPDRRRHLALRGAVRGRAAGLAVPGRRRRAAPAPHPRGRAGGPHGALR RGAGEGAEPGAAAEGDRGAQPGRPRLPRDLRRGARGRRRGRRGQDRRDRHLRRHRGAEAA AAALRPADEGRGLTGPARRPPGLSAVWTRVSRGTPPSAALLCPRARPGHGGGVDVGRARG RGRQTLSSTKKDTPPWTCMSTRRAICSRRTASPCWPASLRRPRTRPRRPRRRSAASPSSR RR >gi|289557355|gb|ADCD01000060.1| GENE 11 10680 - 11334 470 218 aa, chain + ## HITS:1 COG:no KEGG:Bfae_02910 NR:ns ## KEGG: Bfae_02910 # Name: not_defined # Def: predicted membrane protein # Organism: B.faecium # Pathway: not_defined # 1 167 13 178 360 77 34.0 3e-13 MTWMDAMRGFAVLLVMFTHTYTMPQGLDAAFSSVAFANVAQVFQSWRMPMLMFLSGVLLP RSVSKPLGTYYRGKAERILWPFLVWMVVLALATGGPGSLLSIEFWRGGAWHLWFLWVLML CYLIGPVIRRVPALVVAVVLFVLLLEFVSGPRHWVRPLYWGVYFFLGAASARLLPRIRTS PAALGVIAVILMVLTVTATRAGALVVAERQPWSVFAAL Prediction of potential genes in microbial genomes Time: Thu May 26 07:40:03 2011 Seq name: gi|289557350|gb|ADCD01000061.1| Micrococcus luteus SK58 ctg1119142780328, whole genome shotgun sequence Length of sequence - 5218 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 2, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 2/0.000 + CDS 84 - 1382 1004 ## COG0245 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 2 1 Op 2 7/0.000 + CDS 1456 - 2913 1366 ## COG0215 Cysteinyl-tRNA synthetase 3 1 Op 3 . + CDS 2988 - 3977 459 ## PROTEIN SUPPORTED gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 4 2 Tu 1 . + CDS 4210 - 5193 1016 ## COG2984 ABC-type uncharacterized transport system, periplasmic component Predicted protein(s) >gi|289557350|gb|ADCD01000061.1| GENE 1 84 - 1382 1004 432 aa, chain + ## HITS:1 COG:MT3687 KEGG:ns NR:ns ## COG: MT3687 COG0245 # Protein_GI_number: 15843194 # Func_class: I Lipid transport and metabolism # Function: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase # Organism: Mycobacterium tuberculosis CDC1551 # 273 429 4 156 159 152 60.0 2e-36 MPTALVIAAAGAGTRLGAGLPKALAPLADGRTLLHHCLASVAAARAAGLALDAVVVLTPP AEADAGRVAAEVDAGPRLDVPVHCVPGGAERADSVRAGLAAASRALADLAPAGAPRRVLV HDAARALTPPSVFGAVTAALETGAVAAVPGLPLTDTVKQVTPGRGGVDVVAATPARAGLR AIQTPQGFDLDTLLAAHEAVRTDPTLDAAALTDDAMVMEAAGQEVVVVPGDPAAFKVTAP ADLDLARLELARRAPQEASMSQPTRPAVAAAPLPRVGIGTDVHAWAPEDAPRPLWLGGIH WPGERGVAATSDGDVAAHAACNALLSAAGLGDLGAVFGVDRPEMADASGADMLREVLRLL TEAGVAVGNVAVQVVAPRPKVGTRRAEMEAALSAALGGAPVSVSAATTDRLGFIGRKEGL VGIATALVIPAA >gi|289557350|gb|ADCD01000061.1| GENE 2 1456 - 2913 1366 485 aa, chain + ## HITS:1 COG:Cgl2589 KEGG:ns NR:ns ## COG: Cgl2589 COG0215 # Protein_GI_number: 19553839 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Cysteinyl-tRNA synthetase # Organism: Corynebacterium glutamicum # 1 483 1 459 460 457 52.0 1e-128 MAQRFYDTRTAQIRDFEPLVPGEASVYYCGATVQGMPHVGHVRSAIVFDILIRWLEATGL RVTSVRNVTDIDDKILDRSAASHEAGFEASDLYPAREPWWALAYRFEKAFDAAYLALGVR RPTYEPRATGHVPEMFALIERLMERGHAYPAQDGSGDVYFDVRSWERYGELTRQRVEDMQ DAPDADPRGKRDPRDFALWKGAKPGEPATAVWESPWGAGRPGWHLECSAMSTKYLGAEFD IHGGGLDLRFPHHENELAQSTAAGDGFARFWLHNGLVTYGGEKMSKSVGNTISPEEMLGM ARPTAVRYFLGQAHYRSQLDYRPGALDEAEAAVERIEGFTARARAAGAVPPAPDGALADR VPAAFRTAMEDDLNVPQALAALHEAVRAGNSALAGQDLDAAAARLAEVEAMTAVLGLDDV PEGDDAAAGPVSDALDSLVRSQIEARAQARADKDWATADRIRDALAAAGVVLEDGADGAT WRLAD >gi|289557350|gb|ADCD01000061.1| GENE 3 2988 - 3977 459 329 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 [Bacillus selenitireducens MLS10] # 80 325 9 246 255 181 41 1e-45 MSTAPRSGGSRKPKGKKGPMKGTGGHGRKALEGRGPTPKAEDRVYHKAHRAKQLAERSAA KRGPVTDQVRGRVKLTDETVSGRNPVLEALRAGIPAKALHVAVRIEMDDRVKEALRLCLE QGVPVLENTKPELDRLSGEAVHQGIVLQIPPYEYADATALALDALAKHEKGHLRTPPLLI ALDGITDPRNLGAIIRAGSAFDADGVIVPERRSVGVTATAWRTSAGAAARVPVAQAGNLN TTLVDLHKAGYFVLGLDGGGDVSLPGLALATEPLVLVVGAEGKGLSRMVREHCQQIVSIP IDSTMESLNASMAVGISLYEISVQRAGGR >gi|289557350|gb|ADCD01000061.1| GENE 4 4210 - 5193 1016 327 aa, chain + ## HITS:1 COG:Cgl2198 KEGG:ns NR:ns ## COG: Cgl2198 COG2984 # Protein_GI_number: 19553448 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, periplasmic component # Organism: Corynebacterium glutamicum # 29 324 38 330 330 248 55.0 1e-65 MKHRSLPLTAALAVAALGLTACGDSGSGGSGSYTVGINQLVSHPALDGAAEGFKEAFTDA GLDVTFEEQNAQGEQATVTSIASTFANDGDVDLVAAIATPAAQGTASAVKDKPVVFMAVT DPKGAELVASDEAPGGNVTGVSDRNPVKEQLQLLKDVKPDATTVGIVYNSGEANSKVQVD QAKEAGKELGLEVKEATITNSSEVQQGVQSLSGVDGIYVPTDNAVVSALETVVGYGKEQR VPVISADIDSVERGALGTYGIDYKAHGKQAGEMAVKILKDGAKPAELPVGYADPANLQLV LNPTAAEAYGVEIPAELKDRADQLVEG Prediction of potential genes in microbial genomes Time: Thu May 26 07:40:10 2011 Seq name: gi|289557335|gb|ADCD01000062.1| Micrococcus luteus SK58 ctg1119142780318, whole genome shotgun sequence Length of sequence - 18693 bp Number of predicted genes - 13, with homology - 13 Number of transcription units - 6, operones - 2 average op.length - 4.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 25 - 1089 1076 ## COG0468 RecA/RadA recombinase 2 2 Op 1 . - CDS 1313 - 3406 633 ## SVI_0622 hypothetical protein 3 2 Op 2 11/0.000 - CDS 3403 - 6696 2369 ## COG0438 Glycosyltransferase 4 2 Op 3 . - CDS 6693 - 7922 847 ## COG0500 SAM-dependent methyltransferases - Term 7940 - 7978 -0.5 5 3 Tu 1 . - CDS 8088 - 8279 107 ## Mlut_07220 hypothetical protein 6 4 Tu 1 . - CDS 8405 - 8806 398 ## COG1396 Predicted transcriptional regulators 7 5 Op 1 . - CDS 8914 - 10191 903 ## Mlut_07200 hypothetical protein 8 5 Op 2 6/0.000 - CDS 10282 - 10809 261 ## PROTEIN SUPPORTED gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase 9 5 Op 3 . - CDS 10814 - 11428 256 ## PROTEIN SUPPORTED gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase 10 5 Op 4 2/0.000 - CDS 11425 - 14568 2501 ## COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins - Term 14569 - 14594 -0.1 11 5 Op 5 9/0.000 - CDS 14623 - 16308 1542 ## COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily 12 5 Op 6 . - CDS 16323 - 17240 850 ## COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase 13 6 Tu 1 . + CDS 17423 - 18553 906 ## Mlut_07140 predicted membrane protein Predicted protein(s) >gi|289557335|gb|ADCD01000062.1| GENE 1 25 - 1089 1076 354 aa, chain - ## HITS:1 COG:Cgl1910 KEGG:ns NR:ns ## COG: Cgl1910 COG0468 # Protein_GI_number: 19553160 # Func_class: L Replication, recombination and repair # Function: RecA/RadA recombinase # Organism: Corynebacterium glutamicum # 6 331 17 342 376 478 75.0 1e-135 MSKTPDREKALEAALAQIDKQFGKGSVMRLGDQTQTPVEVIPTGSVAMDVALGIGGLPRG RVVEIYGPESSGKTTLALHAVANAQRNGGIAAFIDAEHALDPVYARKLGVDTDALLVSQP DTGEQALEIMDMLVSSGTLDIVVIDSVAALTPRAEIEGEMGDSHVGLQARLMSQALRKIT GRLHQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIETLKEAGNPVG NRTRVKIVKNKMAPPFKQAEFDILYGVGISREGGLIDMGVEEGIVKKSGAWFTYDGDQLG QGKENARRFLKDNPDLAQEIEERILTKLGIGVDPEAEADEAPALTAVPGDTAAG >gi|289557335|gb|ADCD01000062.1| GENE 2 1313 - 3406 633 697 aa, chain - ## HITS:1 COG:no KEGG:SVI_0622 NR:ns ## KEGG: SVI_0622 # Name: not_defined # Def: hypothetical protein # Organism: S.violacea # Pathway: not_defined # 32 552 28 535 660 145 26.0 6e-33 MSETRRVAVVGSGLTRAALLADARFQVPAGHYFARTSLAALATPAAADVLDLGAISTDFR RALVRRDVERRLVEDIVALDPGAIVIDALEERLGVVRLHDGRVITRSPEAAEAGLGSLGG EVLSCGQKGHSELWSAGWSSFVQGLQEAGMWDRVVLHAAQMLTSDELGNPASSAPALEGT NSRLAGLYERMRYDVPAEAIVEVSADLNVAPAEGGKVAPLKLAATGAAHLADKVWEAMNL ARHAPDDRSAAVQRPAPRHADRASTAFTTERQGVVPSSYGGYGVDVVSWESSAAFAEAPV QAGLHRMGLPDGNHLDLIVRGDLGSIQAQESVVVFLSGAMSKRNGSAPPFFAGRRVSQKL GIPWVAVSDPGMQLSHEILLAWYTGAPGSDAVPATVQALRSISAELDRDLLLVGGSGGGF AALRLAEELGDRASALVWNPQTDILEYEPAAVTRYLATIIPEGTPDHVDDRVGAEAKLAA AGVQHRVETMASGARVLILQNASDHHVHRHLLPLLARSGARERDRDLIAVDDSHVARILS WGKGHAVLPVEVTCLAVDAMRRGEGVAKTVARVEEALGAPHAQGLSEAASGGIAEGVAVE PAGAGRVRVSWDLSIVGPSSACTADFAREEGARTVASVENVVSPLIVEGLGEGELWRLDL RDASGRLVGAVRFDARAKKREVEVTPAGRRSYGRKQR >gi|289557335|gb|ADCD01000062.1| GENE 3 3403 - 6696 2369 1097 aa, chain - ## HITS:1 COG:MK1306 KEGG:ns NR:ns ## COG: MK1306 COG0438 # Protein_GI_number: 20094742 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Methanopyrus kandleri AV19 # 888 1072 274 467 491 65 30.0 6e-10 MSPRIPAPVVPEDVASRRRETDPVPVRRRTGRAGKLVVACILDEFSFTSFEGEADLVPLT MEYWRAELTAAQPDLLLVESAWRGHRQTWWNTVHRFGPELEGVLRWCRERGVPTAFWNKE DPVHFNTFLTTAGHFDAVFTTDLDCVPRYKRELGHSNVHFLPFAAQPAHSNPVEAFERVQ GCAFAGAYYARYPERLADLRELSSELSADGRRFDIYDRNLGRGNADYAFPEEYKRFIVGG ALTPDLLDIPYKGYTVNLNLNSVKQSQSMFARRVFELLASNTLVVSNFSRGLRLMFGDLV VATDSGTQMRRRLEQIEAHSNGNERMRAMALRKVLREHTYAERLSFVAQHAGVTLPRAEV ERPLLIVPHAPDRDEEAVRGLLASWTRQSWTDWVLAVLVEDDADAAAVEAAADDDRVVAV QSADGLAALARSRGCTALGTLEPQDWYGPHYLEDLVLTLRWADVDAVGHREHYAVPEGGG APVRREPRTAWTPCDGLPLHRSLVRLDPAAEAAVSGVLTEATAPAGLAVSALEYCAGGAH APAALLEPVSALPLDQGLGLDEIRRHADALVFEESSDDLPVLDLDMLFEGMTTFDAMTMT WEDGEARLTSRMEAGRHQYWINPHVRPLDAELLGRTEPLYLDVGVGLDVMLVAYWLDSAG GRIGHAMIPARQFVEVTIPDDAVAMRWGLRVSGSGSAVIHRVVNGPFVAPPVPLLVRSPD VLVTNIYPSYGNLYRNGFVHSRLRRYLEAGRRLETVTLGTAHQPEFREFEDVDVAVLRPA DLSATLATGEARSLTVHCLLPETWDVLKTAPSLPPTTVWIHGFEIQPWWRRRFNYTSEEE LEAAKDLSETRLTMWREIFESSPEDMHFVFVSQWFAETVFEDVGVRLPDHRWSIIHNPID ADVFPYREKTSEHRLRALSIRPYHSRVYANDLSVAAVLELKDEPWFDEMEFTFLGDGPLF EETLAPLRGLSNVTIRRGFLTHEQIAREHAAHGVLLVPTRSDTQGVSRDEAMSSGLVPVT SAVAAVPEFVDEECAFLAPAEDHRELADALRTLHRDPERYLRMSRAAARRVRAQSGAEHV VKQEMATAFSRERSARA >gi|289557335|gb|ADCD01000062.1| GENE 4 6693 - 7922 847 409 aa, chain - ## HITS:1 COG:mll9724 KEGG:ns NR:ns ## COG: mll9724 COG0500 # Protein_GI_number: 13488554 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Mesorhizobium loti # 50 184 71 205 284 79 41.0 1e-14 MPTPGSDEPVARLLARGSEYSVIVPDAGEDYIQGMVLEGTVYESAMLEKMAEALSPGDVV VDVGANVGNHTLFLACTVGARVIAVEPDARLADAVRRSAALNGVEDAVEVHACAAGAGEG EAVLREGDPANLGTRSIDRSPEAEGDRVPVRTVDEIVGSRLVAMLKVDVEGFEAHVLDGA RRTLRRSQPRLWIECLDEPAYEAAVERLRPLGYRVADVENSSPTVLFVPRSADERQEAGM DAVMRRMYAERSTALALRERLRVGDGEPGEGAEMRADLAEAEADRDAARRRVEELEALVA RNREDFRVLRGFVAEAEDRIWNQRDAQSEREAAQERLQEMEDALERLAVEKESALQAVQQ TRATLRQVRSSRTFQAGKALREAQSLTGVRRAVPRLISIIRADKKGGQA >gi|289557335|gb|ADCD01000062.1| GENE 5 8088 - 8279 107 63 aa, chain - ## HITS:1 COG:no KEGG:Mlut_07220 NR:ns ## KEGG: Mlut_07220 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 63 10 72 72 100 100.0 2e-20 MDEEFGPARAGLVADSLHLPGLDTTATAALAAGVDPRRVWLAVCDLHEIPQERRLGRDVP PKR >gi|289557335|gb|ADCD01000062.1| GENE 6 8405 - 8806 398 133 aa, chain - ## HITS:1 COG:MT2816 KEGG:ns NR:ns ## COG: MT2816 COG1396 # Protein_GI_number: 15842285 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Mycobacterium tuberculosis CDC1551 # 35 110 4 79 112 88 63.0 4e-18 MMRHPVHSHGITRWVDDQPRPRAATPDIKERSMPLLRHEIGDVLRDVRQLQGRTLREVSH DARVSLGYLSEVERGQKEASSELLASICQALDIPLSYLLREVSDRLVEQEGMVVPDTLPD DLTDPSLGSLAGR >gi|289557335|gb|ADCD01000062.1| GENE 7 8914 - 10191 903 425 aa, chain - ## HITS:1 COG:no KEGG:Mlut_07200 NR:ns ## KEGG: Mlut_07200 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 419 1 421 434 687 96.0 0 METASPPTPPERAPQDGDDAPGPRVIGLVADPGTPWALVRRIAGDVEDRLDERLPQPGGW RVETRQESLPVGATGGMVLEEPVRSLADGQGWDTVVAVVDLPRFDDRRGVVADVVPQLRV GVVCVPALGVITPARRLRETVLRIVEHIDTAPHVDPPDGELDVQSADESGEVEEDGGRSP ADGFPEPDTGALRGIAPLVDVDADVTTTTRMGGGSRRTSTVYVKGWTGTLRLLAGMVMAN RPLLMPRDMTFTIASASAAGAYGVFFGSIWVLSSVMSPGRLAAASVLSVVLLVAWLVTTN GLWTHGAAHRHSSRLDNLSTVLTVGLACTVVYVLLFVTLLLVALMIIPVEYLEEELDQPS GVVDYVRLVWLAASMGTMAGAVGSSLDDSHRIRNATYSLRERHRRSERHAGAGEGPTAGE TMSRE >gi|289557335|gb|ADCD01000062.1| GENE 8 10282 - 10809 261 175 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase [Cryptobacterium curtum DSM 15641] # 13 171 759 903 904 105 40 3e-22 MTMAAARDVVHALAHAGLTVATGESLTAGLLAARLADVPGASAVLQGGVVAYQNAVKTGL LGVPEDLLARVGAVDADVARRMALGARAALGADVGAATTGVAGPEPHQGRPVGTVWLGLA VPDADANALDVVGGERDGAATAILLRLDGDRAAIREATVAAALQALTRLLAVRGH >gi|289557335|gb|ADCD01000062.1| GENE 9 10814 - 11428 256 204 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase [Cryptobacterium curtum DSM 15641] # 13 190 480 665 904 103 34 1e-21 MSAAGGAQRVSAWNLPNILTSVRILMVPFFAWALWVGGPWGGDSLVARWLALALFAAAMY TDKLDGDIARARGLITDFGKIADPIADKLLTGTALVLFSLLGELWWWVTIVILVREWGIT LMRFVVIRYGVMPAGRGGKLKTVLQTVGIGLLLLPLAPLVGGWWPWAGWVVTGAATVLTV LTGLEYVKDAWVLRRDALAAQRGA >gi|289557335|gb|ADCD01000062.1| GENE 10 11425 - 14568 2501 1047 aa, chain - ## HITS:1 COG:ML0977 KEGG:ns NR:ns ## COG: ML0977 COG1674 # Protein_GI_number: 15827463 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: DNA segregation ATPase FtsK/SpoIIIE and related proteins # Organism: Mycobacterium leprae # 476 1004 353 882 886 624 63.0 1e-178 MATRTSPTRSSSSSATSRSGPAGRRGSGRKGSTATVPETDRPAAPLRALHTLWMGLATPV GAGFRKLGPDVRIDREERRDGTGLLLLLLAALIAAVEWWGLRGTAVGRVVHGVVGGTVGW FALLVPIALLVVAVRCFRHATDHRANGRIIIGLLMATVAGSGIAHLVGGVPSAAEAFEDM LGAGGMVGYLATAPLASLLTPVPVWILMILLAFFSVLVLTATPVGAIPQRIARGYDWLTG QDPEGASEQRAARRAERRRAREVRREAEDLATPLSADAETGRTHPDHDQSYLDGPAAGAH AAGASRPGLFARLFGGRRAREEQAADAAPEHTAGTAYDSPVIHEAEAGSHAAPEAETTQV LPRPAPRRAARGEQGVFDAEQAAADARDAGRDASDDFDPWVDEDDAPEDADAEPQPPAGV RRPTAADRALEQVREHARTQREAAAPAAGAPEEDAGEDTPFALDDAPGQGSGAAAPSSPS AVPARTPAPVPPVTAEPARGTQSELGGDVSYTLPQSALLPAGPQPKERSEANDRVVAALT TTFTEFKVDAQVTGFSRGPTVTRYEVEVAPGTKVEKVTALEKNIAYAVASSDVRILSPIP GKRAIGIEIPNTDKEVVALGDVLRSQAAQRTDHPMVMGVGKDVEGGYVVANLAKMPHMLV AGATGAGKSSFVNSMITSILMRSTPDEVRMVMVDPKRVELTAYEGVPHLVTPIITSPKKA AEALQWVVKEMDTRYDDLAAFGYKHVDDFNKAVRAGQVKLPPDSKRVLRPYPYLLVIVDE LADLMMVAPRDVEDAIVRITQLARAAGIHLVLATQRPSVDVVTGLIKANVPSRMAFATSS VTDSRVVLDQPGAEKLLGQGDALFLPMGKSKPMRVQGAWVNESEIHAVVEHVKSQMQVQY RADVIPEKTEKVIDEDIGDDLDLLLQAVELVVTTQFGSTSMLQRKLRVGFAKAGRLMDLM ESRGVVGPSEGSKARDVLVKPDDLADVLATISGDTPPSAASGDGDASASAGPRDLVQEDL DSRPAAVDWNDEDDDEGSEDAWQLTGR >gi|289557335|gb|ADCD01000062.1| GENE 11 14623 - 16308 1542 561 aa, chain - ## HITS:1 COG:ML1512 KEGG:ns NR:ns ## COG: ML1512 COG0595 # Protein_GI_number: 15827796 # Func_class: R General function prediction only # Function: Predicted hydrolase of the metallo-beta-lactamase superfamily # Organism: Mycobacterium leprae # 7 560 5 557 558 562 52.0 1e-160 MTAGTRLSTPPKLKRGTCRIVQLGGLEEVGRNMVTFEIDGKILIVDCGVLFPEEHQPGVD LILPDFDYIRDRVDDVVGIVLTHGHEDHIGAVPYLLRLRDDIPVIGSKLTLALIEAKLEE HRIKPRTRVVKEDDIVEFGPFECEFVAVNHSIPDALAVAIHTDAGTILHTGDFKMDQLPL DGRITDLRAFARLGEEGVDLFMTDSTNAEVPGFTTTEAEIGPTLERYFATAKRRIVVASF SSHVHRVQQVLDAAHKHGRKVAFGGRSMIRNMTIAAKLGYLNVPNGILVDIRKVDKYRDD EIVLMVTGSQGEPMAALSRMANGDHQVQLEEGDLVVLASSLIPGNENSVFRVINGLMKLG ATVVHKGMAKVHVSGHASEGELLYCYNIVEPEFVMPVHGETRHLIANGRIAEKTGVPAEN VILAGNGTVVDMTDGLVKVVGEVECGYVYVDGSSVGEISDSDLKDRRVLGEEGFISIITV VNRQTGTIVSGPDVHARGVAEDEKVFEEIKPKIVRALEEAVQSSKDHTAHQLQQVVRRTV GTWVNRKLRRRPMIIPVVLEA >gi|289557335|gb|ADCD01000062.1| GENE 12 16323 - 17240 850 305 aa, chain - ## HITS:1 COG:MT2823 KEGG:ns NR:ns ## COG: MT2823 COG0329 # Protein_GI_number: 15842291 # Func_class: E Amino acid transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: Dihydrodipicolinate synthase/N-acetylneuraminate lyase # Organism: Mycobacterium tuberculosis CDC1551 # 15 303 12 298 300 251 51.0 1e-66 MSAVRSAVIPSELLFGTVVPAMVTPMTDEGAVDLEAAAALAVHLVDRGADGLVVTGTTGE TSTLTDDENVAMFRTVVEAVGDRARVVAGTGTNDTAHTLELSRRAAETGVDGLLLVTPYY NKPNQAGIRAHFEAVADGVDLPIMLYDIPGRSVMPIEPETVIALAQHPNIRALKDAKGDL QSTTTVLVHTDLDLYSGDDGATLPLMALGAVGVVSVAAHAAPELYRQLVDAVHAGDLAGA RDHHFALDPVQRGIMTHVQGAVAAKAVLAAQGVIPSAAVRLPLVQATPDELSVIRADLAE AGITF >gi|289557335|gb|ADCD01000062.1| GENE 13 17423 - 18553 906 376 aa, chain + ## HITS:1 COG:no KEGG:Mlut_07140 NR:ns ## KEGG: Mlut_07140 # Name: not_defined # Def: predicted membrane protein # Organism: M.luteus # Pathway: not_defined # 1 376 48 423 423 440 94.0 1e-122 MITVHVVDPMTADGAPHPAFLWFAGRASVLFVLLAGVGLALSTGGATPATGVRRAALRRR IARRAGLLFVLGLACGTLGVPVAVILCHYALLFLLALPLLGLRARALGVIAGAWLVLGPV LVFAVVAAAQAAVGRQEFFVGGRLWLSPGPADLLRPGLLLADLAVTGYYPVLSWGAFLVL GLALGRLPLDRPRVAAGILGGGAAAWAAAGAVGAAVLRPPGTVDRVTAAIGTDPAETALT LRTGEPRLALLIPDPLWLALPTPHSGSVVAAVLAAGWACAVLGACLLARPLVGHAALRPL VGAGRIPLTLYVGHLVVLALVDATGIDPADGALLAVLVVLCLAAGLAAELSGRRGPLEAV MARLSRADGERAVAGR Prediction of potential genes in microbial genomes Time: Thu May 26 07:40:35 2011 Seq name: gi|289557334|gb|ADCD01000063.1| Micrococcus luteus SK58 ctg1119142776991, whole genome shotgun sequence Length of sequence - 894 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 894 467 ## COG1643 HrpA-like helicases Predicted protein(s) >gi|289557334|gb|ADCD01000063.1| GENE 1 3 - 894 467 297 aa, chain - ## HITS:1 COG:Cgl0142 KEGG:ns NR:ns ## COG: Cgl0142 COG1643 # Protein_GI_number: 19551392 # Func_class: L Replication, recombination and repair # Function: HrpA-like helicases # Organism: Corynebacterium glutamicum # 7 296 33 304 717 202 44.0 5e-52 DAAGGGASAVEFVTPGLLLRRLLADPGLDGVDAVVLDEVHERDLDTDVLFALLADLRQLC PELVLVAMSATVDAAALAARWARGMGEEAPLPVVSTPAVLHPLREEHAPFRGHRLTAEGR VDRAFLDHVAATVARAHAEALDADPSVDALVFLPGVAEVEAVAGRVAALAPDTEVRVLHG RQEPADQDAALAGRADPAVPRVVVATAVAESSLTVPGVRLVIDSGLAREPRRDRGRGMAG LVTVQASRAAAGQRAGRAARLGPGTVVRCHTAAALGAAPAAPTPALAVVDLAPVALA Prediction of potential genes in microbial genomes Time: Thu May 26 07:40:58 2011 Seq name: gi|289557280|gb|ADCD01000064.1| Micrococcus luteus SK58 ctg1119142780304, whole genome shotgun sequence Length of sequence - 59186 bp Number of predicted genes - 53, with homology - 53 Number of transcription units - 24, operones - 11 average op.length - 3.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 74 - 325 218 ## Mlut_05110 hypothetical protein 2 2 Tu 1 . - CDS 527 - 1597 782 ## COG2120 Uncharacterized proteins, LmbE homologs 3 3 Tu 1 . + CDS 1635 - 2081 464 ## Mlut_05090 hypothetical protein + Term 2091 - 2130 2.4 4 4 Op 1 . + CDS 2340 - 2834 612 ## COG0782 Transcription elongation factor 5 4 Op 2 . + CDS 2931 - 3569 582 ## Mlut_05070 hypothetical protein 6 5 Op 1 . - CDS 3580 - 4911 1135 ## COG1171 Threonine dehydratase 7 5 Op 2 . - CDS 4911 - 7097 1294 ## COG0628 Predicted permease 8 6 Tu 1 . - CDS 7288 - 8076 780 ## COG4760 Predicted membrane protein 9 7 Tu 1 . - CDS 8329 - 8697 320 ## COG1733 Predicted transcriptional regulators 10 8 Tu 1 . + CDS 8790 - 9425 323 ## COG2910 Putative NADH-flavin reductase - TRNA 9549 - 9622 71.6 # Leu TAA 0 0 11 9 Op 1 . - CDS 9714 - 11129 1341 ## COG1252 NADH dehydrogenase, FAD-containing subunit 12 9 Op 2 . - CDS 11183 - 12781 1214 ## COG0248 Exopolyphosphatase 13 9 Op 3 . - CDS 12832 - 13650 519 ## Mlut_04990 septum formation initiator 14 10 Tu 1 . - CDS 13787 - 15064 1366 ## COG0148 Enolase 15 11 Tu 1 . + CDS 13979 - 16120 631 ## CE1041 hypothetical protein + Term 16257 - 16305 0.8 16 12 Op 1 . - CDS 16056 - 17267 1035 ## COG1816 Adenosine deaminase 17 12 Op 2 . - CDS 17292 - 17939 628 ## COG0586 Uncharacterized membrane-associated protein 18 12 Op 3 4/0.000 - CDS 17944 - 19278 1196 ## COG0213 Thymidine phosphorylase 19 12 Op 4 3/0.000 - CDS 19353 - 19784 271 ## COG0295 Cytidine deaminase 20 12 Op 5 26/0.000 - CDS 19787 - 21094 1226 ## COG1079 Uncharacterized ABC-type transport system, permease component 21 12 Op 6 24/0.000 - CDS 21091 - 22506 1078 ## COG4603 ABC-type uncharacterized transport system, permease component 22 12 Op 7 15/0.000 - CDS 22503 - 24101 1428 ## COG3845 ABC-type uncharacterized transport systems, ATPase components 23 12 Op 8 . - CDS 24227 - 25384 1153 ## COG1744 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein - Term 25430 - 25464 2.5 24 13 Op 1 . - CDS 25529 - 26785 1043 ## COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase 25 13 Op 2 . - CDS 26847 - 27998 845 ## COG0836 Mannose-1-phosphate guanylyltransferase 26 14 Op 1 24/0.000 + CDS 28315 - 28650 363 ## COG2009 Succinate dehydrogenase/fumarate reductase, cytochrome b subunit 27 14 Op 2 22/0.000 + CDS 28654 - 29133 462 ## COG2142 Succinate dehydrogenase, hydrophobic anchor subunit 28 14 Op 3 36/0.000 + CDS 29211 - 30998 1901 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit 29 14 Op 4 . + CDS 30998 - 31789 735 ## COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit 30 15 Op 1 . - CDS 31967 - 32488 355 ## Mlut_04810 hypothetical protein 31 15 Op 2 . - CDS 32496 - 33110 367 ## Mlut_04800 hypothetical protein 32 15 Op 3 . - CDS 33189 - 33791 610 ## Mlut_04790 hypothetical protein 33 15 Op 4 36/0.000 - CDS 33850 - 35133 201 ## PROTEIN SUPPORTED gi|163788031|ref|ZP_02182477.1| 50S ribosomal protein L9 34 15 Op 5 . - CDS 35130 - 35891 271 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 - Term 35994 - 36049 14.6 35 16 Op 1 . - CDS 36074 - 37150 1010 ## COG0180 Tryptophanyl-tRNA synthetase 36 16 Op 2 . - CDS 37183 - 38109 821 ## COG0708 Exonuclease III 37 16 Op 3 . - CDS 38109 - 38672 512 ## Mlut_04740 hypothetical protein 38 17 Tu 1 . + CDS 38860 - 40278 1148 ## COG0477 Permeases of the major facilitator superfamily 39 18 Tu 1 . - CDS 40294 - 42018 1570 ## COG0842 ABC-type multidrug transport system, permease component 40 19 Tu 1 . + CDS 41122 - 43140 936 ## BURPS1710b_2009 phenol hydroxylase, putative - Term 43117 - 43168 4.3 41 20 Op 1 . - CDS 43249 - 45012 1658 ## COG4716 Myosin-crossreactive antigen 42 20 Op 2 2/0.000 - CDS 45110 - 46021 689 ## COG0190 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase 43 20 Op 3 . - CDS 46029 - 47309 1229 ## COG0112 Glycine/serine hydroxymethyltransferase 44 21 Tu 1 . + CDS 47537 - 49051 1498 ## COG0753 Catalase + Term 49108 - 49159 5.0 - Term 48940 - 48964 -1.0 45 22 Tu 1 . - CDS 49157 - 50875 1007 ## Mlut_04650 hypothetical protein 46 23 Op 1 . + CDS 50874 - 51779 867 ## COG0788 Formyltetrahydrofolate hydrolase 47 23 Op 2 . + CDS 51835 - 52356 448 ## COG0663 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily 48 23 Op 3 . + CDS 52390 - 53385 742 ## COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases 49 24 Op 1 21/0.000 - CDS 53413 - 54705 1446 ## COG3839 ABC-type sugar transport systems, ATPase components 50 24 Op 2 38/0.000 - CDS 54741 - 55658 718 ## COG0395 ABC-type sugar transport system, permease component 51 24 Op 3 35/0.000 - CDS 55655 - 56488 866 ## COG1175 ABC-type sugar transport systems, permease components 52 24 Op 4 . - CDS 56623 - 57978 1063 ## COG1653 ABC-type sugar transport system, periplasmic component 53 24 Op 5 . - CDS 58014 - 59186 729 ## COG1643 HrpA-like helicases Predicted protein(s) >gi|289557280|gb|ADCD01000064.1| GENE 1 74 - 325 218 83 aa, chain - ## HITS:1 COG:no KEGG:Mlut_05110 NR:ns ## KEGG: Mlut_05110 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 83 52 134 134 117 96.0 2e-25 MVVMAIIVFRVMVRSVRRVQQRSPEAEAMLVERHQQHLPDEARAGGEHLDADSEDRLRRL QAKYPGYLQEPAPEPQAPDTGRD >gi|289557280|gb|ADCD01000064.1| GENE 2 527 - 1597 782 356 aa, chain - ## HITS:1 COG:Cgl0963 KEGG:ns NR:ns ## COG: Cgl0963 COG2120 # Protein_GI_number: 19552213 # Func_class: S Function unknown # Function: Uncharacterized proteins, LmbE homologs # Organism: Corynebacterium glutamicum # 51 355 1 280 285 260 49.0 3e-69 MTTSAWTPHAAAPAAAPPSGQECAIHVTDQTPQAQLAAGTALPPSTGLRLMAVHAHPDDE SSKGAGTMAAYAAAGAEVMVVTCTGGEAGTLLNPSFGDTTRADRDIAAVRREEMAEAARI LGIRHAWLGFLDSGLPEGDPLPALPANCFAEIPLRDAAAPLISLVRRFRPHVLISYDEVG GYPHPDHLQAHAVTMEAYRAAGLADEYPEAGPAWEVSKVYYDCGFNPRKFRTMAAVAEAD GEDVPFARRLMMFDAMDAMREVLRRREAGEDVPDPEVIPPWVTADHDVTTQVDVTGFLDE RDAALRAHRTQIDPDGMFFDAPHDLQRRAWPWEDFALIDSRVPSELPEHDLFAGLR >gi|289557280|gb|ADCD01000064.1| GENE 3 1635 - 2081 464 148 aa, chain + ## HITS:1 COG:no KEGG:Mlut_05090 NR:ns ## KEGG: Mlut_05090 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 148 1 148 148 233 98.0 2e-60 MSHHAPAVRAQDPTLANRYGTDHTRPGRRRLWAGLGGLGLVVAVLLSVWIGLNMSVGAIE YKDVGFTIEDDGHATVTFQASVPEGVQAECDVLVTDSHAAPVGFRTVRLETLPADRRDSP SDAQQRYTVDVRTVVRGDSGVVETCRKV >gi|289557280|gb|ADCD01000064.1| GENE 4 2340 - 2834 612 164 aa, chain + ## HITS:1 COG:MT1111 KEGG:ns NR:ns ## COG: MT1111 COG0782 # Protein_GI_number: 15840516 # Func_class: K Transcription # Function: Transcription elongation factor # Organism: Mycobacterium tuberculosis CDC1551 # 4 162 2 162 164 124 46.0 1e-28 MTTSQSDAPWLTQEAYDRLSKELEHISGPGRQEIIERIEAARDEGDLKENGGYHAAREEQ SKNEGRIAELKHLLETARVGEAAENDGAVHPGTVVTAVVAGDEMTFLFGNREIAADDESL EVYSERSPLGEAINGAKKGDKVSYTAPNGKDIKVEVKDVQPYSG >gi|289557280|gb|ADCD01000064.1| GENE 5 2931 - 3569 582 212 aa, chain + ## HITS:1 COG:no KEGG:Mlut_05070 NR:ns ## KEGG: Mlut_05070 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 212 1 212 212 312 96.0 6e-84 MLTVEKAHLLLTREDGLSESPSHHRVALAAAALADHRSAGIVTLEDVPVDRARVLVTAAG TTGDPVLDSSLGQVDALAGRPLVSTVAAGKPDLRKAVVAHLTETGRLTERKAFLATRHVP RGTARTELLAHLTAVVLDEAEPSDEDVLLLGALQHLNLARRLLPGAHERYDRREMVRRIE TLTREDLLVQAVRRAVGGTCGTVTAAAAGSVA >gi|289557280|gb|ADCD01000064.1| GENE 6 3580 - 4911 1135 443 aa, chain - ## HITS:1 COG:VNG2100G KEGG:ns NR:ns ## COG: VNG2100G COG1171 # Protein_GI_number: 15790940 # Func_class: E Amino acid transport and metabolism # Function: Threonine dehydratase # Organism: Halobacterium sp. NRC-1 # 18 437 72 482 495 294 44.0 2e-79 MGAAQATDTPDRTVPTPSPRWVRPAGGPPAPTALPVTLEEIERARETLSGIAELSPLQHS RALSRAVGTDVHLKCENLQRAGSFKVRGAYVRMAQLSEEERGRGVVAASAGNHAQGVALA AAKLGIRARIFMPHGVALPKLQATRDHGAEVVLHGSTVDESLAEAQRWATETGAVFIPPF DDPAVIAGQGTVGLEILDVLPDVDTVIMGIGGGGLIAGTAVALKEAARRRGRTVRVIGVQ AATAAAFPGSLEEGRVQVLESVSTIADGIAVGRPGALPLRIAAELVDAVVTVTDDEIAAA LVHLLERSKLVVEPAGAVGVAALLAGRTADLGFELGTTAVILSGGNIDPMLMLKSIQAGL SAAGRYMTVRIPLRDRPGELATISRIIADTDANVVRVDHTRVGPDLSMGGVHITIDMETR GTEHSAQVLEALRAAGYSPAPLP >gi|289557280|gb|ADCD01000064.1| GENE 7 4911 - 7097 1294 728 aa, chain - ## HITS:1 COG:MT0215 KEGG:ns NR:ns ## COG: MT0215 COG0628 # Protein_GI_number: 15839585 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Mycobacterium tuberculosis CDC1551 # 346 678 18 352 367 204 37.0 5e-52 MTETSDLPAFGAPDATGTQHRLHRGSAEAVVVGLGGALRRYRVAGVDLTEPYGPDVVPPA ANGIQMSPWPNRVAGARWILDGVEQLLDVTEPARGHASHGLLRNTHFVTETFSAHAVTLR GEIHPQHGWPFRLSHRVTYELEADGGLTVTAEVQNHTDATVPVAVGAHPFLRIGDVPTAE LSLRVPADAWIRTGEDLIPVETLPVDGTDLDFRRGRTVGEDALDVCLTGLTPGRRRPAPP DPARRGRPGLDPVVRPRVRLHPRLRHGSAARPGHGARGGAAHRSRGRPELGGGPAPARPA RPLERPVGSDPPCPRPPTRGGSRVSSTLAAQTKIDKDVPYGLTVAAAWSWRLVAVVIGVG VVVYLLSFVSLVLIPILVAALLATLLAPVYQAMRRIRVPGVAAALLCVLLLIVVVVGLMV LAGQQIVQGFAQLGDQLGQAVDGAIAWLAGVGVEIPRSGGGLEGLWQTLRDNSATLMNSA VSFGSTAVNIGAGLFIALFSLIFFLYDGDRIWRFLLIFVPKAHRATVGRAGRSGWQSLGS YVRVQIFVAFIDAVGIGIGALILGVPLAIPLAVLVFLASFIPMIGATLTGAMAVLLALMS NGLVNALLMLGVVLLVQQIESNVLQPLVMGKAVALHPLAVFLAVAAGSTVLGLAGAVFAV PVLAFVNSFVRALTADTPEELTERTGHALEPGGAEDETAGSHRDRPSAHDDAALASEADA GTRHGDDA >gi|289557280|gb|ADCD01000064.1| GENE 8 7288 - 8076 780 262 aa, chain - ## HITS:1 COG:XF2760 KEGG:ns NR:ns ## COG: XF2760 COG4760 # Protein_GI_number: 15839349 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Xylella fastidiosa 9a5c # 76 257 29 225 253 115 38.0 7e-26 MNSQNFQQQMQGGGQAQPGWYRGGTQSAQSPYGQQDPSGRAQAFGAGQAAQDYAHQQSME DAFRAPAASPEHTGRMTYNDVVGKTGLMLVLVVVAGAVGWFSPGLMIVGAIAGLVLGLVN SFKREPSPVLIMLYALAEGLFLGGISAVFEASYPGIVVQAVLGTLSVFAVMLALYTSGKF RPTPRMTKIVMTAMLGYPVFMLVNLVLTWTGIANLRTGGLGLIIGALAVLLAAYSLTMDF EMAAVGVKNGAPQKFSWSVGSA >gi|289557280|gb|ADCD01000064.1| GENE 9 8329 - 8697 320 122 aa, chain - ## HITS:1 COG:AGc3635 KEGG:ns NR:ns ## COG: AGc3635 COG1733 # Protein_GI_number: 15889290 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 12 120 32 140 147 117 51.0 4e-27 MNQAGAKRGNPYEQGCPTRHILDRIGDKWTVLIVGALGEESLRFSELRRRIEGISQKMLT QTLRALEEDGLVVRTVYAEVPARVEYRLTEAGHSLRAPLQALEEWSITHLADVLHARTHY QT >gi|289557280|gb|ADCD01000064.1| GENE 10 8790 - 9425 323 211 aa, chain + ## HITS:1 COG:VCA1054 KEGG:ns NR:ns ## COG: VCA1054 COG2910 # Protein_GI_number: 15601805 # Func_class: R General function prediction only # Function: Putative NADH-flavin reductase # Organism: Vibrio cholerae # 4 211 3 212 212 94 33.0 1e-19 MTAITVVGGTGYAGAAIVAEAARRGHTVTVISRTAPGTQVEGVDYVTGDLTQSVPDLAGA EVVVAALSPRGDNAGKLRDAYRSLAQAAATNGARFVGIGGFSSLRPAEGAPRFVEGDDLP PEFAAEAREMNDILADLATGSVDVDWLFVSPAAEFGSHAPGEALGRYRVSGEVALFDQDG KSAISGADFARAVLDEIETPTRHRAQIHFAY >gi|289557280|gb|ADCD01000064.1| GENE 11 9714 - 11129 1341 471 aa, chain - ## HITS:1 COG:all2964 KEGG:ns NR:ns ## COG: all2964 COG1252 # Protein_GI_number: 17230456 # Func_class: C Energy production and conversion # Function: NADH dehydrogenase, FAD-containing subunit # Organism: Nostoc sp. PCC 7120 # 12 433 6 414 442 146 27.0 8e-35 MSLTPELSPKPRLLIVGGGYAGFHVARELQKKVAERGGVVTVVDPRPYMTYYPFLPEVVG GHIEGRHVNVDLQTHLKDAEVVRGAVVSVDHAGRTAVVRGEGGDEFEIPYQDIVMTAGAV TRVFPIPGLGEQGIGLRSVEEAVQLRNQILERLDAGSLMTDAEERKRALTFVVVGGGFAG IEAIAEMENLIRNAVERNERLSQSEIRIVLVEAMGRIMPEVSEEQAQGVVEHLKDRGIEV LLNTSLGDATDGVMKLVAMPSKEEAETFAADTLVWCAGVVANSVVKSTDFPVDDRGRVEA TPTLQIKDGEAGALEGAWACGDVSAVPDLTGAGPGGFCVPNAQHAIRQAKRLAANYMAVR HGKGEVQEYVHKSLGTVAGLGFGRGVGNPLGTKIAGIPAFLAHRGYHGYAMPTLERKFRI LSGWVAETLFGRDSTSVAGLDTPFNPFRRAAGVELEPGRFERQRALESSKG >gi|289557280|gb|ADCD01000064.1| GENE 12 11183 - 12781 1214 532 aa, chain - ## HITS:1 COG:Cgl0952 KEGG:ns NR:ns ## COG: Cgl0952 COG0248 # Protein_GI_number: 19552202 # Func_class: F Nucleotide transport and metabolism; P Inorganic ion transport and metabolism # Function: Exopolyphosphatase # Organism: Corynebacterium glutamicum # 211 530 5 313 321 224 43.0 3e-58 MTVSPRPAQDRTVTEKDLDTLSRQLGRPVRDVVEIGARCVCGNPLVATTAPRLSNGIPFP TTFYLTHPVLTAAVSRVEADGEMARMNDRLAQDPVLAAAHRAAHEAYIAERDRVGAEAGT GPVPEIAGVSAGGMPERVKCLHALVGHALAAGPGVNPLGDEAIALVAPWWTPEVCACEGA WDEDAAVPTKDLSRHVKHLERVAALEEVTVAGVDCGTNSIRLLISRPAGTDETTGAGADP AAPLADVVREMRVVRLGEGVDATGAFSDAALERTFAAVEEYARLVQRHHAGRVRFVATSA SRDVSNRAAFVDGVRERLGVEPEVVSGAEEAGLSFAGAVSAVETADLGPEDLVLVVDLGG GSTELVVGTPAGEVVGAVSLDMGCVRFTERHLRSDPPTSDEVTAARADALRLLDDAAARL PLERVARVVGVAGSVTTVTAEALGLSTYEPEAIHGARLPIAEFRAAAEGLVAATRAERAE RGFMHPGRVDVIGAGALLWSTVLERVAEVAGVTEAWASEHDILDGIVLSLRS >gi|289557280|gb|ADCD01000064.1| GENE 13 12832 - 13650 519 272 aa, chain - ## HITS:1 COG:no KEGG:Mlut_04990 NR:ns ## KEGG: Mlut_04990 # Name: not_defined # Def: septum formation initiator # Organism: M.luteus # Pathway: not_defined # 1 272 1 268 268 232 90.0 1e-59 MSPRRPRVPRVDPTTGAPRRPAVAAPAAPTTASPQADAPTPTPEATTPTPAATDAEVIDL HSVQERRQAGHHGHLDGHPDADRADTAPAEDTAAPASPSAPPRRTAPARPAGRRPRPAPR RAASAAATAARRRAPLPEPVPARQITGRALIVVAVLLVAAVLVAPTLRAFLNQQLEISAA REEIAAMQAQREDYERRIQLWDDPSYVTQQARERLELVMPGETLYSVTGRPSETETDTEA EDTPAAGADETVNTRLPWAEGLWDSAVRAGLE >gi|289557280|gb|ADCD01000064.1| GENE 14 13787 - 15064 1366 425 aa, chain - ## HITS:1 COG:Cgl0949 KEGG:ns NR:ns ## COG: Cgl0949 COG0148 # Protein_GI_number: 19552199 # Func_class: G Carbohydrate transport and metabolism # Function: Enolase # Organism: Corynebacterium glutamicum # 1 425 1 425 425 550 72.0 1e-156 MALIDAIHAREILDSRGNPTVEVEVLLTDGSLGRAAVPSGASTGEFEAVERRDGDKKRYG GKGVLDAVAAVEGIAEELEGEFAADQRAVDRAMRDLDGTPNKGKLGANAILGVSMAVAAA AAQASDLMLYKYLGGPNAHVLPVPMMNILNGGAHADSNVDIQEFMIAPIGAPSFREALRW GTEVYHALKSVLQEKGLSTGLGDEGGFAPSLESNRAALDLIAEAVTKAGYRLGEDIALAL DVASSEFFDKGSYTFEGQQRSAEEMAAYYTELVDNYPIVSIEDPLDEDDWDGWQHLTAQL GDRVQLVGDDLFVTNVERLQRGIDEKAGNALLVKVNQIGSLTETFDAISLAQRHMFHCMI SHRSGETEDTFIADLAVATNAGQIKTGAPARSDRVAKYNQLLRIEEDLADAAVYAGRSAF PRFRG >gi|289557280|gb|ADCD01000064.1| GENE 15 13979 - 16120 631 713 aa, chain + ## HITS:1 COG:no KEGG:CE1041 NR:ns ## KEGG: CE1041 # Name: not_defined # Def: hypothetical protein # Organism: C.efficiens # Pathway: not_defined # 15 354 89 428 445 255 53.0 4e-66 MRDHAVEHVALGQGDRVKGLGQGADLVDLHEQGVAGLLVDAALQPLHVGDEQVVAHQLDA IAQLRRQVLPAVPVVLVERVLDGDDRVVVHQLGVVGGHLLGGALLALEGVGALVEELGGG DVQRQRDVLTQAVAGLRHGLGYEVQGGAVGLQGRGEPTLVAQAGGQALLLQHGLQGVVDL GAPAQGLTEGRGADRGDHELLDVHVGVRVGAAVEDVHHRHGQHVGVRAAQVLVEHEVGGL RGGRGDGHGHAQDRVRAQLALVGGAVQVPHRAVHGALVRGELALELLRDALDGGDGVQHT LAAVALLVPVTALDRLELAGGRARRHGRAAQGAVGQQDLHLDGGVAARVEDLASVDGVDQ GHGRVSFNRSRKSCPRRGHGLSLAGTSGSGRPRAGDKTAVPPCCDVAGARSGLRPGRSGV ASAGRAQRRPVPGTHPGHRGAQGPFGVQPRRPGPAHQREQLRPERGLVRPPRRRALPRLG GRRGDVRGERVRLLPSRAVHHLRGGGQRRQPGRDVADVEARAGAAVVVGRGGGREPRGRP LPRLDPLPGQFDGLGRDGGELLGRAQAALGGEHERVAPDHLGREGVGGVVQAEPGRLRRG ARRPGDGGVQDHLEQDVPELGGQGGVRAVGPTRGHVGPRGGVAGLDLRHRLVRLLHEVLG EVGVRERGRPGAVVAQGLDHRHQTVHTRAHGRISRPRPRRPAPRGPGPRRRRR >gi|289557280|gb|ADCD01000064.1| GENE 16 16056 - 17267 1035 403 aa, chain - ## HITS:1 COG:ML0700 KEGG:ns NR:ns ## COG: ML0700 COG1816 # Protein_GI_number: 15827296 # Func_class: F Nucleotide transport and metabolism # Function: Adenosine deaminase # Organism: Mycobacterium leprae # 23 369 14 345 362 309 51.0 5e-84 MTTTQLPDTASPSPLEVDLAVLPKVSLHDHLDGGLRVGTVLDLAREAGVEVPADTVEGLA EWIAEHANGESLEKYLQVFALTTAVMQTREQLRRVAREFVEDLVADGVVYGEIRWAPEQH LAGGLTLDEAVEAVQAGLDEAVEAADAAGHVIRVGQLVTAMRHADRAQEIAELAVRHREA GVVGFDIAGAEAGFPPSRFADTFTWLAAHHLPVTVHAGEGDGLDSVRSALVDGRALRLGH GVRLAEDISVEYGGVDEDGEQLDELTGLVDLGETAAWVRDRQIALEVCPSSNLQTGAVDA AAGIAGHPIDLLVQLGFRVTVNTDNRLVSDVSLTDELYLLAETFGYSLSELLDLQLNAAE AAFLSVDEREDLAEILVAGWGEVISGDAVGPVLEELDDEDEDD >gi|289557280|gb|ADCD01000064.1| GENE 17 17292 - 17939 628 215 aa, chain - ## HITS:1 COG:Cgl0276 KEGG:ns NR:ns ## COG: Cgl0276 COG0586 # Protein_GI_number: 19551526 # Func_class: S Function unknown # Function: Uncharacterized membrane-associated protein # Organism: Corynebacterium glutamicum # 1 200 5 201 206 59 27.0 5e-09 MLAWLEEAILHASAQWWVLPLTLLLCLLDGIVPIFPSESVLVALGAIVRDGHPFSLWALW GVGFAGAFLGDVAAYAIGRAVGVERFRWMRLRRVRATVEVARHHLHSHGALLLFTARFIP GGRVALNLTAGATRYPPVRFVALDLLSTASWAAYSIMIARLTAGWLENPVLQIAVSVTGA ALVGLLLDRLLKALLRRRLGSGVKGLTLAEQEALR >gi|289557280|gb|ADCD01000064.1| GENE 18 17944 - 19278 1196 444 aa, chain - ## HITS:1 COG:MT3415 KEGG:ns NR:ns ## COG: MT3415 COG0213 # Protein_GI_number: 15842906 # Func_class: F Nucleotide transport and metabolism # Function: Thymidine phosphorylase # Organism: Mycobacterium tuberculosis CDC1551 # 10 443 6 426 427 453 63.0 1e-127 MTAQPQAEPFDAVEVIRTKRDRGTLSPEQIDWVVDAYTRGVVADEQMSALAMAILLNGMD RAEIARWTDAMIASGERMDFGGLTTPDGRPLATADKHSTGGVGDKITLPLAPLVASFGVA VPQLSGRGLGHTGGTLDKLEAIPGWRADLSNEAMLRQLSEVGAVICAAGSGLAPADKRLY ALRDVTGTVEAIPLIASSIMSKKIAEGTGALVLDVKCGSGAFMKDEASARELARTMVDLG RDAGVDTSALLTDMSVPLGRTAGNALEVRESVEVLAGGGPADVVELTVALAAAMLAGAGV TDVDPAEHLANGRAMDVWNRMIEAQGGDPRAALPTAAHTEDVVAETDGVLTELDAMAVGL AAWRLGAGRERQGQAVQAAAGVEVHVRPGERVAQGQKVLTLHTDTPERFERARAALAGGW AVGELDDVDARTLRERSVILDRIG >gi|289557280|gb|ADCD01000064.1| GENE 19 19353 - 19784 271 143 aa, chain - ## HITS:1 COG:ML2174 KEGG:ns NR:ns ## COG: ML2174 COG0295 # Protein_GI_number: 15828164 # Func_class: F Nucleotide transport and metabolism # Function: Cytidine deaminase # Organism: Mycobacterium leprae # 13 136 4 127 134 143 54.0 9e-35 MADGQHTTTAPRVDWDRLRAAALAATEHAYVPYSGFRVGAAALTDDGRLVSGCNIENASY GLTLCAECALLADLRMGGGGRLAAFVCVDGDGVLTMPCGRCRQLLYEFRAPGLVLLTPAG ERGIDAVLPDAFGPADLERADRP >gi|289557280|gb|ADCD01000064.1| GENE 20 19787 - 21094 1226 435 aa, chain - ## HITS:1 COG:alr5368 KEGG:ns NR:ns ## COG: alr5368 COG1079 # Protein_GI_number: 17232860 # Func_class: R General function prediction only # Function: Uncharacterized ABC-type transport system, permease component # Organism: Nostoc sp. PCC 7120 # 128 435 2 307 312 249 47.0 6e-66 MSATAARPHADVVRPEAAEPARVVVRHWTTPIALTVLTLLALAVFALGAPEATATFRLST PSDAVVLPDLTADPVLGGWLFVGLMAALTVVAWLATLRSGRTPGWAAALFAVAFVAAFLI WVIGSADNTTVFLTGLIAGSFALAVPLIFGSMAGILAERSGVVNIAIEGQLLAGAFTAAV VGTATGSPWAGLAAAIVAGVLVSWLLAVFSIKYLVNQVIVGVVLNVLVAGLTSFLYSTVL TGGDTELNAPPHFPNLRIPGLADIPVLGPILFDQTILGYAMYLLVIALWFALFRTRWGLR VRAVGEHPKAADTVGIDVNRTRYAAVLLGGAVAGMGGAFFTLVSASSFTKEMTAGQGFIA LAAVIFGRWNPIGAFFAALLFGFATNMQYVLAILGTPVPSQFMAMLPYLVTVFAVAGLVG RSRGPAASGVPYVKE >gi|289557280|gb|ADCD01000064.1| GENE 21 21091 - 22506 1078 471 aa, chain - ## HITS:1 COG:TM0104 KEGG:ns NR:ns ## COG: TM0104 COG4603 # Protein_GI_number: 15642879 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Thermotoga maritima # 84 397 36 339 344 182 37.0 1e-45 MSTAAPQRPAPASDTAARPAPADSALRRILSGNGTVTALAILLSLLISGLLIIAVDEDVR DAAGYFFARPGDLLSAAWAAFAGAFAALFRGAVFNYRASDATGMLYPLTETLTVATPLII ISLGIAIAFRAGLFNIGGQGQFIFGAMFATWFGVHLHLPAGVHLLLVVVMGVLGGVLWGS VVGVLKAWTGAHEVILTIMLNYVAVNLLAYLLNTPVLRAPATTNPVSAPLDRSAMFPRLL GTDFRLHWGFFVALLAVLFTWWLMQRSTLGFRLRAVGANPDAARTAGISVRGSYLAAMAI SGGLAGLAGATHVAGTESTLNTSVAGSFGFDAITVALLGRSHPVGVLFAGLLFGALRAGG VTMQTETGVPVDIVLVVQSVIVLLIAAPPLVRAIFRLPAPGAARARRAADPVTQPAVAGA AVTGAAGHAAAPSTGVQEAAAAAVADPQAPTTQPTDAAPTHRPHEQKGDAR >gi|289557280|gb|ADCD01000064.1| GENE 22 22503 - 24101 1428 532 aa, chain - ## HITS:1 COG:CAC0703 KEGG:ns NR:ns ## COG: CAC0703 COG3845 # Protein_GI_number: 15893991 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport systems, ATPase components # Organism: Clostridium acetobutylicum # 3 499 5 503 514 460 48.0 1e-129 MRLELRGITKRFGSFAANEDVNLTVESGRVHTLLGENGAGKSTLMNVLFGLYEPTEGEIL LDGEPVRFSGPGEAMRAGIGMVHQHFMLVPVFTVAENVALGDEHTRALGVLDLEATRRRI REISAQYGFDVDPDAVVEDLPVGVQQRVEIIKALVRDARILILDEPTAVLTPQETDELLG IIRQLRADGTAIVFISHKLREVKAVSDDITVLRRGRVVGTADPSAEAAELAALMVGRNVV LERRKTAPTLGEETFRVEDLSVVSPTGQVLLDAVSFAIRQGEVLAVAGVQGNGQTELTEA IMGLVKATGSVTLDGRELIGRSTRQIIRAGVGFVPEDRSTDGLVGPFSVAENMVLNRYDV APAGNAVQMRPAAVRALAERRVAEFDVRTQGVDLPVSSLSGGNQQKVVMARELVDGLRLF IASQPTRGVDVGSIEFLHDRIIAERDAGTPVLIVSTELDEVLELADRIAVMYHGRIVGIV PGDTSRETLGLMMAGQTPDDAALASGADVAAGTPGTAGAAPAAHPTTEGERP >gi|289557280|gb|ADCD01000064.1| GENE 23 24227 - 25384 1153 385 aa, chain - ## HITS:1 COG:TM0102 KEGG:ns NR:ns ## COG: TM0102 COG1744 # Protein_GI_number: 15642877 # Func_class: R General function prediction only # Function: Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein # Organism: Thermotoga maritima # 64 377 19 340 359 133 30.0 7e-31 MGIATPSAARRRRLLLPAAALGVSGLLLTACGAPPEQSEASGSGAAESEAAATVDGVGSD NNDYKACIVSDEGGFDDRSFNQSSYEGLKAAEKAYGITTSEAESNEPSEYTPNVTALVNA DCDAVIGVGFLLGDTMKPIAAQHSDTHFFGVDVTDGDFTDNFQKLTYDTAQAAFLAGYLA AGTTETGTVATYGGAELPTVTIFMDGFARGVEHYNEVKDEDVKVLGWDKDAKTGSFTGDF ENVANGKTNTANFINEGADIVMPVAGPVGLGTLDAVREANQGGKDVKVIWPDSDGYESTK DGNLILTSVKKNMGQSVSDVIAADLKDEFSAEPYVGTLENKGVELAPFHDFEDTVPQELK DELKDLEAKIVSGELKVGSEYSPEA >gi|289557280|gb|ADCD01000064.1| GENE 24 25529 - 26785 1043 418 aa, chain - ## HITS:1 COG:Cgl0667 KEGG:ns NR:ns ## COG: Cgl0667 COG1473 # Protein_GI_number: 19551917 # Func_class: R General function prediction only # Function: Metal-dependent amidase/aminoacylase/carboxypeptidase # Organism: Corynebacterium glutamicum # 28 410 16 383 394 325 47.0 1e-88 MTTSDSVLTGPRPTSVPSVGPVVAELEDEIVSFRRDLHRHPELSYEEYRTTDRIVELLSG YGLSPVRMESTGAYADVGEGPVVLALRADIDALPVEEETGLPYVSVNDGVAHACGHDMHT AVMAGVAVALGRILRGATADPDLRAVGERVHGTVRVIFQPAEERLPGGSLAVLRQGILDD VPRILAAHCDPQVDVGSIGTRIGAITSAADTIRITLTGRGGHTSRPHLTEDMVFALSQIA VNVPAVLSRRIDVRSAVSVVWGQIAAGSAPNAIDNTGYLAGTMRCLDADVWEEAGALLDE VVRQVAAPYGVHVQLEHVRGVPPVHNTEGETALIETAARRELGSRAIVLTPQSMGGEDFA WMTQRVPGSMLRLGTRSPGGPIYDLHRGDYAPDERAIGVGMRVFTAAALQVLTGEDHH >gi|289557280|gb|ADCD01000064.1| GENE 25 26847 - 27998 845 383 aa, chain - ## HITS:1 COG:DRA0032 KEGG:ns NR:ns ## COG: DRA0032 COG0836 # Protein_GI_number: 15807702 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Mannose-1-phosphate guanylyltransferase # Organism: Deinococcus radiodurans # 11 376 2 364 372 238 40.0 2e-62 MSTDPNLTDAPREAAPGTALSRFHAVIPAGGVGTRLWPLSRAAAPKFLHDLTGSGQTLIR ATWDRLAPLAAGMLVVTGEAHREAVCTQLPALAETDLVLEPSPKDSAAAIGLAAAILSLR DPDTIMGSFAADQVISPVEVFQDAVRQAVETAATGRIVTIGIEPTHAATGFGYIRRGRRL RVAGAPDAHDVAAFVEKPDLKVAQQYVKSGRYLWNAGMFVAPVGLMLAHLEENEPALHAG LMEIARAWETPERDEVMARVWPELTKTAIDYAVAEPAAAVGDVAVIPGSFTWDDVGDFAA IARLNPVKDASGITVIGDTPRVYSDDASGVVVTDTKRVIALIGIEDVVVVDTEDALLVTT TEHAQEVKKAVEALKAEGVDEVL >gi|289557280|gb|ADCD01000064.1| GENE 26 28315 - 28650 363 111 aa, chain + ## HITS:1 COG:ML0699 KEGG:ns NR:ns ## COG: ML0699 COG2009 # Protein_GI_number: 15827295 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, cytochrome b subunit # Organism: Mycobacterium leprae # 1 88 36 123 153 105 55.0 2e-23 MWSWVGHRVTGVVIFFYLLVHVLDTALVRVSPEAYNAVIGSYKTWYFALGEAGLVAAIIF HALNGLRIILVDFWKGGTQHHKTLLWIVLGLWAVLTLGFAIRHFSLALGGH >gi|289557280|gb|ADCD01000064.1| GENE 27 28654 - 29133 462 159 aa, chain + ## HITS:1 COG:ML0698 KEGG:ns NR:ns ## COG: ML0698 COG2142 # Protein_GI_number: 15827294 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase, hydrophobic anchor subunit # Organism: Mycobacterium leprae # 18 141 37 160 163 136 50.0 2e-32 MSTTAETTIAAPRSRRLDPTYTRDGGGRGNFEMLAWLFMRISGVFLVVLIAVHLTTNLLV GDGIHAVDFGFVAGKWAHPLWQFWDLALLWLAMLHGANGVRTIINDYTRRGTGRFWLTMI LYIATAVIIVLGTLVIFTFDPCMVDASGALLEGSPAFCG >gi|289557280|gb|ADCD01000064.1| GENE 28 29211 - 30998 1901 595 aa, chain + ## HITS:1 COG:MT3419 KEGG:ns NR:ns ## COG: MT3419 COG1053 # Protein_GI_number: 15842910 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Mycobacterium tuberculosis CDC1551 # 4 595 5 590 590 831 70.0 0 MQVHKYDVVIVGAGGAGMRAAIEAGQRAHTAVLTKIYPTRSHTGAAQGGMCAALANVEED NWEWHTFDTVKGGDYLVDQDAAEVMAKEAIDAVLDLEKMGLPFNRTPEGKIDQRRFGGHT RDHGKAPVRRACYAADRTGHMILQTLYQNCVKHNVEFFNEFYVLDLLLVEEDAVREDGTA YKQKRTAGVVSYELATGEIHVFQAKSVIFATGGAGKVYKTTSNAHTLTGDGMAIAYRAGL PLEDMEFVQFHPTGLAGLGILLSEAARGEGGILRNADGERFMERYAPTIKDLAPRDIVAR SMAEEVRQGRGAGPNKDYVLLDLTHLEPSHIDEKLPDITEFARTYLGVEPYTEPVPVFPT CHYFMGGIPTNIQAEVLQDNDTVVPGLYAAGEVACVSVHGSNRLGTNSLLDINVFGRRAG IYAAEYAVQADWVELPEGGELPTVEHIENLRSATGSERVADIRAELQESMDADMQVFRDE DSIRRALAKIEELRGRYENVSVQDKGHRFNLDLLEGMELGYLLDIAEAMTLAALGRKESR GGHYREDYPDRDDENFMAHTMIYRDETAEMEGVKGIRFETKPVVVTRYQPMERKY >gi|289557280|gb|ADCD01000064.1| GENE 29 30998 - 31789 735 263 aa, chain + ## HITS:1 COG:MT3420 KEGG:ns NR:ns ## COG: MT3420 COG0479 # Protein_GI_number: 15842911 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit # Organism: Mycobacterium tuberculosis CDC1551 # 32 259 24 260 263 314 62.0 9e-86 MSHSATETEAPVAQAQTQSAGGGAGEVESFDIVLKVRRYLPESSEESYWDEWRLTMYGTD RVLDALHKVKWDHDGTLSFRRSCAHGVCGSDAMRINGRNRLACKTLLKDLDLSKPILVEP IKGLPVEKDLIVDMDPFFQSYREIMPFLVAEGHAPTKERYQSQADRAIYDDTTKCILCAA CTSSCPVFWTDGQYFGPAAIVNAHRFIFDSRDEAGDMRLEILNDKEGVWRCRTTFNCTDA CPRGIQVTKAISEVKQAILARQF >gi|289557280|gb|ADCD01000064.1| GENE 30 31967 - 32488 355 173 aa, chain - ## HITS:1 COG:no KEGG:Mlut_04810 NR:ns ## KEGG: Mlut_04810 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 172 1 174 175 240 94.0 2e-62 MHPLDDDPHETTDPAPDLASLRPLRLFQTVTAVTGALSAAGVGGVLALQSTPGYARAVLE ARSWGASEVTDADVAAFLTPAGAWPVAAAAVVVLTLVLLAGITRRIRAVRPVGSVLVVLG MLTAAFWMVDGGRMVQDGGGGPVVLGAVVGMFVSSAVWLRVAHRRETRDAFDV >gi|289557280|gb|ADCD01000064.1| GENE 31 32496 - 33110 367 204 aa, chain - ## HITS:1 COG:no KEGG:Mlut_04800 NR:ns ## KEGG: Mlut_04800 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 11 204 1 194 194 318 95.0 6e-86 MASDHRPPHPVSPHPDDLDGGGRPEVGPDEARRRVAGHSGPDARPLIRPDARTPVVFRAL LGLTVASAVLYAASILRNLLPGAAQDIADSLPEGSAQSPAMTAEAIEGALTGSVWFATLL GLAVYAIVLVGLTRHSNTARIMGALFASIAIFVTLLGAIRLFVFPAGDVVLPLVLGGLFA LVNAAWLVCAFNPGLATTFLRRRA >gi|289557280|gb|ADCD01000064.1| GENE 32 33189 - 33791 610 200 aa, chain - ## HITS:1 COG:no KEGG:Mlut_04790 NR:ns ## KEGG: Mlut_04790 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 200 1 201 201 308 95.0 7e-83 MTTDRPHQDPNPGQPAAGSRYGTQPYAAPGYGAQPGSPYGIVPEPTAFPALLTLTLTSLA LYVLSSLPALFGGEESIERMRDSLRQSGLTPEQVEEIAPVVGASVTVGSIIVLLIGVALY ALVYFNLRGAKNWARILGIVLAILGTLSAVGGIFSFVTFPGIGGVLASVLSLALVIVNIL WLVKAFNPQVAAYTRQGRRA >gi|289557280|gb|ADCD01000064.1| GENE 33 33850 - 35133 201 427 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163788031|ref|ZP_02182477.1| 50S ribosomal protein L9 [Flavobacteriales bacterium ALC-1] # 287 427 286 413 413 82 34 7e-15 MKATDVAGTALANTMRSKLRTFLTVVAIVIGAFTLTLTTGLGAGINKYVDNVVEGFGKPG ELTVMKQQDMSSAGASSGSPQEYTEQDAAGGEMFGMPLLTQEDLAAIEDTEHVTEVKTYR VAEPEYIQGPDDRKWQTGFMGSSGEIDMLTFSAGRAPEAGAAEIAMPESWVEDLGAGDAE DLIGTELTVVAATPLQEHKSVTATVVGVTKAAASGAGTAPTPSESLEQAIYDITTEGLPE SQRDTYFQATAIVEDPEANEDAVKQALADQGLLAQTLEEQLGVIRGIIDAVTWVLTGFAL IALLAASFGIINTLLMAVQERTREIGLMKALGMTGGKIFGLFTMEAVVIGLLGSLIGIGL GVAVGLIANQVLTTGPLSGVTGLVLFAVNPLALLLILLLIVAIAFIAGTLPALRAARKDP IEALRHE >gi|289557280|gb|ADCD01000064.1| GENE 34 35130 - 35891 271 253 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 20 249 1 225 245 108 33 5e-23 MSTAVPIPAVAEVPPGAEPVLETENLVKVYGRGASRFDALKGITLQIQRGESLAVVGKSG SGKSTLMHLLALLDQPSAGVVAMDGRPVSQLKAAEISQLRNERFGFVFQQFFLNPNQTVL ENTVLPLKIAGVGRAERARRGMAVLERLELADKAKNKATDLSGGQKQRVCIARALVNNPT VLFADEPTGNLDSATSAAVEDILFGLHRDEGITLVVVTHDDDLAAKCDRRVELQDGVVIA DERVGTEQDGARA >gi|289557280|gb|ADCD01000064.1| GENE 35 36074 - 37150 1010 358 aa, chain - ## HITS:1 COG:Cgl0657 KEGG:ns NR:ns ## COG: Cgl0657 COG0180 # Protein_GI_number: 19551907 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Tryptophanyl-tRNA synthetase # Organism: Corynebacterium glutamicum # 12 358 4 345 345 394 58.0 1e-109 MKKNSVQDVLAQDAAATAHLAGASARHRVLSGMQPSADSLHLGNYLGALVNWERTQADFE AFFFIPDLHAITVPQDPAALAERTRVAAAQFIAGGIDPERSTLFVQSQVPEHAQLAWVLT CMTGMGEAMRMTQFKDKSAKQGADAAGVGLLAYPMLMAADILLYQPHGVPVGDDQRQHVE LTRDLAQRFNHRYGETFVVPTGFYPETGARIYDLQDPTSKMSKSAASPNGLINILEEPKK TAKKIKSAVTDDGTEVRFDREAKPGVSNLLTILSAVSGTPIPQLEEEFVGKMYGHLKVAV ADAVVERLAPVRERALALLDDPAELDRILAAGAEKARAVATPVLEDVYAKVGFLPPLR >gi|289557280|gb|ADCD01000064.1| GENE 36 37183 - 38109 821 308 aa, chain - ## HITS:1 COG:Cgl0651 KEGG:ns NR:ns ## COG: Cgl0651 COG0708 # Protein_GI_number: 19551901 # Func_class: L Replication, recombination and repair # Function: Exonuclease III # Organism: Corynebacterium glutamicum # 39 306 5 303 304 194 41.0 1e-49 MTALPEKDPVTGKYPEPAEGEPVVHANAGAPKADGAVRVATVNVNGIRASHRKGMREWFA GRGVDVLTLQEVRAPADVTAQLVREIVGEDWDEVHLADAVAAAKGRAGVAIASRFPLGEV RTGIADADGYFDDAGRWIEADLRLPDGSPLTVVSAYVHSGEVDTPKQVDKYRFLDEMVRR LSELAAGEGHALVTGDLNVGHTELDIKNWKGNVKKAGFLPEERAYFDRFFGELGFTDVHR ALAGPVPGPYTWWSMRGKAFDNDAGWRIDYHMATAGLAERATTAVVDRAPSWGTRFSDHA PLVVDYQF >gi|289557280|gb|ADCD01000064.1| GENE 37 38109 - 38672 512 187 aa, chain - ## HITS:1 COG:no KEGG:Mlut_04740 NR:ns ## KEGG: Mlut_04740 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 186 1 186 187 277 96.0 1e-73 MSQSLTPGPDGARRGPRAGLRVGSLGFVAMIVILIVAIIFAANQNDVIGWLVVAVAAGWL VFAVVVYLQMRRGVQAAGRKVDTAMQNARADVAALRGRDADAAAPAVVPPAPAADPLRDT KLDHSFKIAQVQVRVVREQLAAGEGMDREMVDRALETIDITASNARDMIKESRAGGAEGP VSGTVIG >gi|289557280|gb|ADCD01000064.1| GENE 38 38860 - 40278 1148 472 aa, chain + ## HITS:1 COG:lin2977 KEGG:ns NR:ns ## COG: lin2977 COG0477 # Protein_GI_number: 16802035 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 4 453 20 462 470 204 31.0 3e-52 MPLFLALMSVSVVNVALPAIESGLDATSADLQWVLAGYTLTFGTVLVAAGRAGDLWGRKN LFLAGITLYMLGSLLSGLAGDTLLLNAGRLLTGLGAGVFNPQVIGFIQSNFHGRARGRAY GLFGTVVGLGVAVGPLLGGLFLGAFGPEWGWRSTFLMNVPVGLAAVAMGALWLPPPTRVH GLPAAPGPRGIAALDPVGALLLGAGGVSLMVPFIVPGTAWLLVLAAALVTAWWLWEKRVK ARASATGVQPMVDPALFRRPSFTIGALESTVYLATMPAVFAIVAIFLQRGMGFTPLEAGL VGLPGAVVVASLSPWVGSMVQRRGPVLVLLGALVGLVSLGVLALAFERSAAGAWSPWIVG VGLIVQSASQALLLTSTQVLMMDDVAGHEAGAAGGVAQTAQRLGTALGLSVVTGAFFAAL AGAAAESAGPPSAAAYAHAASTAMGMVAVCWALTAAVAALDVVRRRRAARAA >gi|289557280|gb|ADCD01000064.1| GENE 39 40294 - 42018 1570 574 aa, chain - ## HITS:1 COG:SMa0863 KEGG:ns NR:ns ## COG: SMa0863 COG0842 # Protein_GI_number: 16262924 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Sinorhizobium meliloti # 326 540 18 228 262 95 30.0 3e-19 MRRYGAVLLVGALGEPVLYLLAMGLGLAQLMGGGMPQDALGGVSYVAFIAPALLASGALM TASVEFSYPVMGGFQWQRTYYAAQATPLSPAQIALGHLVAVSLRFVFQAAVFLLVMLAFG VVSSPWAWVQVLTATLGGLAVGAPIMAFAASLKEDKGQFATLQRLVIMPLFLFSATFYPL EALPVWLRWIGWLSPQWHAAQLGRVLSYGMAEPGWLTVVHVAFLLALALGGAWLAVRIYT RRLGWVRGAPDRDAVTAARRDRAPRLGRRAAHTKAARADVAPAAAQADPAAPSSVVREHA VAVPPMPEIPVRRGPLAGAYSGNVRAVMERAFLSLKSNNWVVFFSGFFEPVLYLASMGLG LGALVGDVAGPDGTPVPYGMYLAPALLAVSAMNGAIYDSTWNVFFKLRYAKTYQTMLSTR LGPLDVALGEIAMALLRGLIYAVGFLIVMTAAGLVTSWTALLMIPGALLVALGFASLGMA VTSWMKTFQHMDWVQIVLMPMFLFSATFFPLAVYPEPIQWVIRVFPLWHAVELMRALAVG VLSWATAGHVLYFVVMAGVGVWLAARRLGALFLR >gi|289557280|gb|ADCD01000064.1| GENE 40 41122 - 43140 936 672 aa, chain + ## HITS:1 COG:no KEGG:BURPS1710b_2009 NR:ns ## KEGG: BURPS1710b_2009 # Name: not_defined # Def: phenol hydroxylase, putative # Organism: B.pseudomallei_1710b # Pathway: not_defined # 407 633 18 247 335 86 36.0 4e-15 MFPHHRRRRGRVRLRGGGCDVGAGGLGVRGTAAQARGTVPTGGRDGVAVRGAADPAEAAR VDPHREPGPAEREGQQERHVHHGEPARLGHPVGEHAAELGGMPLRREPADPAQPHRQRLE RVEGGGEQEQGHDHEPLQGGELALVLLQGGRERHDRRADGEPAERGGEDLHPRPRARDHA ERQHHQQEHGSLEHEPQAHRHEVAQGDLRRRQRSGLRRVVRPLPLEPAHHRVGELDGRGH QRARGQQRRGDERDVGDPAQGVLRHPAAHELGQAQAHGQQVEHGLAERPDEQHRAVATHG PQLVLGVEQDAAALHALRGLGGGVRRAQRPGGRGGGRHGSVRQGAAGEDEEHVLEARAAG QRGDGGGQGALVDEALHDVVQVVRAPGVDEDAVREDLDAVHDAVTRVGLDGAGRGLVAVR AEARLEDLAGGVLADELGGGAGGHDLAAVDHDEPIAQLLRLVHVVRGQQQRGAAFLEPVE AVPQDVAGLRVQARGGLVEEEEGRLVDQGAGDHEPPLHAAGEVGDLGVRLLGELGEGQQL LGLGPQVRVGQTEVAAVDQDVLPGGELLVQVVLLGHHAQARTDGRPVLLRVDAQDGQLAR GALRGAREHAHGGGLARAVGTEQAEALTGAHVQVDAPHGVELAVLLAQPTGTDDGGVAGG RVQSGVTHKATA >gi|289557280|gb|ADCD01000064.1| GENE 41 43249 - 45012 1658 587 aa, chain - ## HITS:1 COG:SA0102 KEGG:ns NR:ns ## COG: SA0102 COG4716 # Protein_GI_number: 15925810 # Func_class: S Function unknown # Function: Myosin-crossreactive antigen # Organism: Staphylococcus aureus N315 # 1 562 1 555 591 671 57.0 0 MYYSSGNYEAFARPRKPEGVEKKKAYLVGAGLASLAAAGFLVRDGQMPGENITILEASDI AGGALDGIPDPHRDGFLIRGGREMENHFECLWDLFRSVPSLEVEGASVLDEFYWLNKDDP NYSLMRATQDRGQDGHTDGKFTLDVKAQKDLLDLVMAREEDLYDKRINEVMGKSFLASNF WLYWRTMFAFEEWHSALEMKLYVQRFIHHIGGLPDFSALKFTKYNQYESLVQPLMRWLQD QGVQVQFDTRVTNVVFDITAQRKTARRIEWLRGGQEGGVDVDEDTLVFVTNGSLVTNSSW GDNTTAPTWDYEVKPGDGWQLWKNIARQDPDFGRPDKFIHAPNVHAEHETAWESATITTL DDRITPYIERICQRDPHSGRVVTGGIVTARDSAWLQSWTINRQPHFKEQRPNELTIWFYG LMIDTPGDFIPKPMRECTGEEICQEWLYHLGVPEDQIPELAKNSCITRPCALPFVTAFFM PRTKGDRPQVVPEHVTNFAFLGQFAETVRDTIFTTEYSVRTAMEAVYQLLDVERGVPEVW GSVYDVRELLKATAIMRDGKRLPVPGWLSRRLEKTQVGDLMERYGVI >gi|289557280|gb|ADCD01000064.1| GENE 42 45110 - 46021 689 303 aa, chain - ## HITS:1 COG:Cgl0629 KEGG:ns NR:ns ## COG: Cgl0629 COG0190 # Protein_GI_number: 19551879 # Func_class: H Coenzyme transport and metabolism # Function: 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase # Organism: Corynebacterium glutamicum # 1 291 1 282 284 300 58.0 2e-81 MTAKVLDGKATAAAIKEELRGRVAALAERGYTPGLGTLLVGEDAGSQKYVAGKHRDCAEV GIESIQRELPADATEEQILDVVRELNEDPACTGYIVQLPLPRHVDTQKVLEAIDPDKDAD GLHPMNLGRLVASVGGELDSPLPCTPAGCVELLRHHGVELAGKHVLVIGRGVTIGRPAGL VLTRREVNATVTLAHTGTTNLDELLASADVVIAAAGSAHMVKPEQVKEGVIVLDVGVSRV TGEDGKSRVLGDVDPAVKEKAAWMAPNPGGVGPMTRVMLLANVVEAAERAADGEDWAGER VGA >gi|289557280|gb|ADCD01000064.1| GENE 43 46029 - 47309 1229 426 aa, chain - ## HITS:1 COG:Cgl0969 KEGG:ns NR:ns ## COG: Cgl0969 COG0112 # Protein_GI_number: 19552219 # Func_class: E Amino acid transport and metabolism # Function: Glycine/serine hydroxymethyltransferase # Organism: Corynebacterium glutamicum # 3 426 6 431 434 608 71.0 1e-174 MTQTPDINTQPLAEVDPEIAAALADELGRQRGTLEMIASENFVPRAVLETQGSVLTNKYA EGYPGRRYYGGCEFVDVAENLAIQRAKDLFGAEHANVQPHAGAQANVAVMAALLDHGDTM MGLSLAHGGHLTHGMKLNFSGKNYNIAAYEVEPDTHRIDMDKVREKALEARPKVIVAGWS AYPRQLDFAAFRSIADEVGARLWVDMAHFAGLVAAGLHPNPVPHADVVSSTVHKTLAGPR SGFILSTEELKKKIDSAVFPGQQGGPLMHAIAGKAVAFKIAGSADFKEKQERTLAGAQIL AERLTAPDMAEHGISVLTGGTDVHLVLVDLRESQLDGRQGEDILHEVGITVNRNSVPWDP RPPMTTSGLRIGTPALASRGFGEAEFREVSDVIAEALKPSPDVEALRARVVKLTEDFPLY DGLEGW >gi|289557280|gb|ADCD01000064.1| GENE 44 47537 - 49051 1498 504 aa, chain + ## HITS:1 COG:Cgl0256 KEGG:ns NR:ns ## COG: Cgl0256 COG0753 # Protein_GI_number: 19551506 # Func_class: P Inorganic ion transport and metabolism # Function: Catalase # Organism: Corynebacterium glutamicum # 9 483 17 509 516 529 56.0 1e-150 MTEYQKTTPHATGSTRQNGAPAVSDRQSLTVGSEGPIVLHDTHLLETHQHFNRMNIPERR PHAKGSGAFGEFEVTEDVSKYTKALVFQPGTKTETLLRFSTVAGELGSPDTWRDVRGFAL RFYSEEGNYDIVGNNTPVFFLRDPMKFTHFIRSQKRLPDSGLRDATMQWDFWTNNPESAH QVTYLMGPRGLPRTWREMNGYGSHTYLWVNAQGEKHWVKYHFISQQGVHGLSNDEATKIA GENADFHRQDLFESIAKGDHPKWDLYIQAIPYEEGKTYRFNPFDLTKTISKKDYPRIKVG TLTLNRNPENHFAQIESAAFSPSNTVPGIGLSPDRMLLGRAFAYHDAQLYRVGAHVNQLP VNRPKNAVHNYAFDGQMWYDHTGDRSTYVPNSNGDSWSDETGPVDDGWEADGTLTREAQA LRADDDDFGQAGTLVREVFSDQERDDFVETVSGALKGVRQDVQARAFEYWKNVDATIGQR IEDEVKRHEGDGIPGVEAGGEARI >gi|289557280|gb|ADCD01000064.1| GENE 45 49157 - 50875 1007 572 aa, chain - ## HITS:1 COG:no KEGG:Mlut_04650 NR:ns ## KEGG: Mlut_04650 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 61 572 1 487 487 346 82.0 2e-93 MASMVGGAGRTEPRDDGADPWSGGRAPCHPQDQVPRRAAAREARRGARPGRSPQTTEEHP MAQFTLYWIIAAIIVVLLILIILSVIASRRRREAEAEAAETRLERRGVTADTAGEQAAAP AAPTRLSRLDEVAAEEDARPAAAEKPAGAPAASETAAAGRETDESVAGVAGGAGVSVDQQ DAPRTDATAETHRRDAATPATRGTLRPAAAAPSTGREANTVGLGAAGVAGGSGVTLDEQT SAADVPATAASPSPETESTAPAAPAPAAPQQRSHLTPAPEHVHGTVPADEVATEHTPTKE FATDAIPVPQGEHLETHTVATTAHGSVTVVAAESDQTQQNDADGAERSAAGSLRIDGTPG VPGRVGEAGRELARTEDHRADAAQPAAVEPAAERPSLEAAPAPRRAEAPETHAGTTPATP LGGAPELDPTAAESGRAEDATPATRREARAAQSAAAAGTAGTAAPTSSTPTTVAPDTSTS SAPTDEEPAEDDTEGAALPDLRADRDETRGSDAEGESKLAQAGAVAASAFETVRDKVAVP LRDNVAVPAKDKAVKVIKDKLAQAQERRWGKR >gi|289557280|gb|ADCD01000064.1| GENE 46 50874 - 51779 867 301 aa, chain + ## HITS:1 COG:RSc1873 KEGG:ns NR:ns ## COG: RSc1873 COG0788 # Protein_GI_number: 17546592 # Func_class: F Nucleotide transport and metabolism # Function: Formyltetrahydrofolate hydrolase # Organism: Ralstonia solanacearum # 21 300 7 287 288 314 55.0 2e-85 MDTAALSPSPSPASGAEHAHVLTLACTNRKGIVHAVTGALLGVEADITESQQYGSPDTGD FFMRVEFVTPAVREDIEQALAPVREEFGMRMGLWDAAHRMRTLVMCSKDGHTLNDLLFQQ RAGTLPIEIPVVVSNHLDLQPLASFYGVPFIHVPVSKDPSSRDSKEAAEDRLRDLIAQFD IELVVLARYMQILSDELCRDLAGMAINIHHSFLPSFKGARPYHQAHERGVKLIGATAHYV TADLDEGPIIAQSVQPVTHAQTAADFVARGRDVEGSTLAQAVRWHAQHRVLTDGRRTVVF S >gi|289557280|gb|ADCD01000064.1| GENE 47 51835 - 52356 448 173 aa, chain + ## HITS:1 COG:MK0112 KEGG:ns NR:ns ## COG: MK0112 COG0663 # Protein_GI_number: 20093552 # Func_class: R General function prediction only # Function: Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily # Organism: Methanopyrus kandleri AV19 # 13 164 5 156 165 144 51.0 1e-34 MAHIITVAGATPRIHESVFLAPTAAITGDVEMAERSSAFYGASARGDSAPIRVGAGTNLQ DNVVLHADEGFPCTLGAGVSVGHSAVVHGATVEDDCLIGMSATVMNGAVIGTGSLVAAGA LVLEGTQVPAGSLVAGVPAKVRRPLTDEEREGLKKNAATYLRLSAAHRDAVAG >gi|289557280|gb|ADCD01000064.1| GENE 48 52390 - 53385 742 331 aa, chain + ## HITS:1 COG:L51032 KEGG:ns NR:ns ## COG: L51032 COG0111 # Protein_GI_number: 15673970 # Func_class: H Coenzyme transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoglycerate dehydrogenase and related dehydrogenases # Organism: Lactococcus lactis # 52 331 38 319 325 152 34.0 6e-37 MPTSSALPRTTPDDVPERLLILPAAQDVAGTPYAHARRLAEQAVTDVGGAAVAEGDTSAT ALLMVRPIPVDALATALAAHPRVSWVQFPFAGIEPFVPLVRSHPDIVWTSAKGTYAPPVA EHALLLTLALLRDLPARVRATTWGPSSGRTLNGLNAVVVGGGGIAQEYIRLLKTWDVHVT AVRRRAGDVPGADRTVTTDRLDEVLPGAQVVMIAAAATDETRGLFDADRLALLDEDAVLV NIARGTLVDTDAVVRALAAGRLHGYGTDVTDPEPLPDGHPLWTEERALITPHTADTPEMC VPLLHARVERNLRARAAGTELEGLVDAEGGY >gi|289557280|gb|ADCD01000064.1| GENE 49 53413 - 54705 1446 430 aa, chain - ## HITS:1 COG:MT1276 KEGG:ns NR:ns ## COG: MT1276 COG3839 # Protein_GI_number: 15840683 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, ATPase components # Organism: Mycobacterium tuberculosis CDC1551 # 1 391 1 388 393 375 53.0 1e-104 MASITLNHIDKTYDDGFHAIKDVNLEIEDGEFVILVGPSGSGKSTLLRMIVGLEDITDGE MLIDGRRVNEAAPKDRNLAMVFQNYALYPHLTVYENIAFPLRLIKENKPSEEEIDRKVRD AARVLELEDHLERKPGNLSGGQRQRVAMGRAIVREADAFLFDEPLSNLDAKLRGQMRAEI SQLQRRLATTSVYVTHDQTEAMTLGDRVAVLKKGELQQVASPRELYEQPLNLFVAGFIGS PSMNFLPASLKQKEGGHVLSSPIGDIPVPPEKARAAEGRDIVFLGLRPEFFEDAELVEDS RRDQGSTFDATLTHLEWLGHEQYGYIEFDPDPAVAEMLSSLAKDLDADELRPVVVATLSG ESRARPGTPTRLWVDTTRVHLFDPTTGENLTRDPEVGAELTRRAAEERRRQIEMATERDA AEREADAPRR >gi|289557280|gb|ADCD01000064.1| GENE 50 54741 - 55658 718 305 aa, chain - ## HITS:1 COG:MT1275 KEGG:ns NR:ns ## COG: MT1275 COG0395 # Protein_GI_number: 15840682 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Mycobacterium tuberculosis CDC1551 # 37 305 9 274 274 266 56.0 3e-71 MSTAASAPAPEGRAPEGRGPEGRAPHRRGTGKATALWWILTVLIGVWCLFPLFSIFATSF KTPADLANGKLLPTQWSTVNYEEIFVGGSRELFLTALRNSIGITVIATIIAVILATLCAY AIARLDFPGKRLVLTVSLMVSMFPVISLVTPLFNMWRTLGLYDTWIGLIIPYLSLTLPIS IWTLAAFFRQIPWELDQAAQVDGATPLEAFRKVIVPLAAPGVFTTAIIAFFIAWNDFVFG ISLTSTETARTVPAALAFFTGASQFESPTGAISAAAIIVTIPIVILVLAFQRQIVAGLTN GAVKG >gi|289557280|gb|ADCD01000064.1| GENE 51 55655 - 56488 866 277 aa, chain - ## HITS:1 COG:MT1274 KEGG:ns NR:ns ## COG: MT1274 COG1175 # Protein_GI_number: 15840681 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Mycobacterium tuberculosis CDC1551 # 1 266 37 295 307 207 48.0 2e-53 MLFVVLYPILQALYDSLFKYRLTAPGDREFVGLGNYGVILTDPVFWKDLGVTLLITVVTV VVELILGFLLALAMHHAIKQTRGLIRTIILVPYGIITVVSAFAWFYMFSIDSGYINAWFE WLPGVDADLNWFAQSSTALFVIMLSEIWKTTPFISLLLLAGLAQVPGDLTEAAAVDGASW WQRMKLVILPNMKASIMVAVLFRAMDAFRIFDSIYIMTNGAYGTEVLSLLAYRTSIGRLE IGMGSAVSVILFLCVALMAVIAVKGFKVDLADRGGSK >gi|289557280|gb|ADCD01000064.1| GENE 52 56623 - 57978 1063 451 aa, chain - ## HITS:1 COG:ML1086 KEGG:ns NR:ns ## COG: ML1086 COG1653 # Protein_GI_number: 15827531 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Mycobacterium leprae # 28 436 4 451 468 168 29.0 2e-41 MRDDGRHIRLASNEVPLVRHDTRARQRRRATLAGAVAAGALILAGCAPAEQTPTLTWYTN PDDGGQAKIAAQCTDAANGRYRIETSMLPTDAGSQREQLTRRLAAGDTSMDIMSLDPPFV PELAEPGFLAPVPEEMQAYAKDNALEGALAAASWKDELVTVPFWANTQLLWYRKSVAEAA GLDMSQPVTWDQLIEAARSQDKDLAVQGARAESMTVWLNALIEGGGEQIIPNAEAPTDEV TTNLDSEAGRTAARIISTIGKEGLGSAGLPTQDENASMLLFQGKNGSFMVNWPFVWPATL GSVEEGTLPEDLPEDIGWAVYPRTAEDKDAAPPVGGINLGVGAKSEHQDLAWDAISCITT TDHQSQYFVENGNPPADPAAYDAPEVTEKFPMADTIRESLELGAPRPQTPYYNEVSTAIQ QRYAPPSGVSESTPAETDDFIQEVLRGERLL >gi|289557280|gb|ADCD01000064.1| GENE 53 58014 - 59186 729 390 aa, chain - ## HITS:1 COG:Cgl0142 KEGG:ns NR:ns ## COG: Cgl0142 COG1643 # Protein_GI_number: 19551392 # Func_class: L Replication, recombination and repair # Function: HrpA-like helicases # Organism: Corynebacterium glutamicum # 26 388 394 716 717 192 40.0 9e-49 GAPGADLEALVAALRDGRHPEAGRWRREADRLERLARRHAHHAPETREPDGPGPEAATAR RHPAGLVAALAFPAWIARRAGEEEAYLLASGTRAALPRDAVGGGLAGQEWLAVAEVARVA GDAAGTGAVIRVAAPIDRPLAERAGAGLRRTEDTADWRGDRLTGRRVDRLGALVLAETPA PVAPDAAAQAVRDALAADGLARFDPRGRAEHLRRRVHLLHRVLGAPWPDLSDTALPDLDE LVDGLAADLSAGRPLARLDAEALLRGALPWPEAGRLDELAPERLPVPSGRGVVVDYPAVH EDTPPVVAAKLQEFFGARVTPAVADGREPVVLHLLSPAGRPLAVTADLPSFWAGPYAQVR AENRGRYPKHPWPEDPAAAEPTARTNRRAR Prediction of potential genes in microbial genomes Time: Thu May 26 07:42:33 2011 Seq name: gi|289557199|gb|ADCD01000065.1| Micrococcus luteus SK58 ctg1119142780296, whole genome shotgun sequence Length of sequence - 89810 bp Number of predicted genes - 77, with homology - 74 Number of transcription units - 45, operones - 16 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 9/0.000 - CDS 69 - 2375 2193 ## COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain 2 1 Op 2 23/0.000 - CDS 2372 - 3166 664 ## COG0047 Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain 3 1 Op 3 . - CDS 3163 - 3429 279 ## COG1828 Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component 4 2 Tu 1 . + CDS 3949 - 4212 235 ## Mlut_02530 hypothetical protein 5 3 Op 1 . - CDS 4702 - 5265 400 ## Mlut_02560 hypothetical protein 6 3 Op 2 . - CDS 5363 - 6355 666 ## Mlut_02570 hypothetical protein 7 4 Tu 1 . + CDS 6342 - 6761 117 ## 8 5 Op 1 . - CDS 6558 - 8423 1450 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) 9 5 Op 2 . - CDS 8519 - 9589 734 ## Mlut_02590 hypothetical protein 10 6 Tu 1 . + CDS 9856 - 12840 2618 ## COG1404 Subtilisin-like serine proteases 11 7 Tu 1 . - CDS 12966 - 14252 1196 ## COG0527 Aspartokinases 12 8 Op 1 . + CDS 14342 - 15493 319 ## PROTEIN SUPPORTED gi|225084369|ref|YP_002657150.1| ribosomal protein S16 13 8 Op 2 . + CDS 15592 - 16746 863 ## Mlut_02630 hypothetical protein 14 9 Tu 1 1/0.273 - CDS 16790 - 17389 477 ## COG0353 Recombinational DNA repair protein (RecF pathway) 15 10 Tu 1 . - CDS 17505 - 20963 1646 ## COG2812 DNA polymerase III, gamma/tau subunits 16 11 Tu 1 . + CDS 20448 - 21707 647 ## COG0778 Nitroreductase - Term 21639 - 21678 3.7 17 12 Tu 1 . - CDS 21747 - 22733 718 ## COG0008 Glutamyl- and glutaminyl-tRNA synthetases + TRNA 22981 - 23066 59.1 # Ser GGA 0 0 + Prom 22983 - 23042 80.3 18 13 Tu 1 . + CDS 23285 - 24847 680 ## PROTEIN SUPPORTED gi|145634045|ref|ZP_01789756.1| 50S ribosomal protein L21 19 14 Op 1 . - CDS 24935 - 26707 1618 ## COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] 20 14 Op 2 . - CDS 26781 - 27677 766 ## Mlut_02720 predicted HAD superfamily hydrolase 21 15 Tu 1 . + CDS 27792 - 28724 771 ## Mlut_02730 hypothetical protein + Term 28816 - 28849 7.5 22 16 Tu 1 . + CDS 28873 - 30261 992 ## COG1525 Micrococcal nuclease (thermonuclease) homologs + Term 30312 - 30345 7.5 23 17 Tu 1 . + CDS 30503 - 31408 527 ## COG1525 Micrococcal nuclease (thermonuclease) homologs - Term 31282 - 31316 0.2 24 18 Tu 1 . - CDS 31502 - 32599 968 ## COG1295 Predicted membrane protein 25 19 Tu 1 . - CDS 32706 - 34124 1246 ## COG1760 L-serine deaminase 26 20 Tu 1 . - CDS 34309 - 35079 713 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 27 21 Op 1 . + CDS 34756 - 35406 157 ## 28 21 Op 2 29/0.000 + CDS 35403 - 36185 658 ## COG2086 Electron transfer flavoprotein, beta subunit 29 21 Op 3 . + CDS 36209 - 37219 831 ## COG2025 Electron transfer flavoprotein, alpha subunit 30 21 Op 4 . + CDS 37272 - 38996 1301 ## Mlut_02800 thiosulfate reductase cytochrome b subunit (membrane anchoring protein) 31 22 Tu 1 . - CDS 39127 - 40119 746 ## Mlut_02810 hypothetical protein 32 23 Tu 1 . + CDS 40123 - 41373 1179 ## COG1960 Acyl-CoA dehydrogenases 33 24 Op 1 12/0.000 - CDS 41462 - 42649 983 ## COG1024 Enoyl-CoA hydratase/carnithine racemase 34 24 Op 2 3/0.091 - CDS 42646 - 43443 778 ## COG1024 Enoyl-CoA hydratase/carnithine racemase 35 24 Op 3 2/0.273 - CDS 43440 - 44357 847 ## COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases 36 24 Op 4 . - CDS 44392 - 45918 1376 ## COG1012 NAD-dependent aldehyde dehydrogenases - Prom 46017 - 46076 3.2 37 25 Tu 1 . + CDS 46099 - 46872 661 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 38 26 Op 1 . - CDS 46894 - 47451 479 ## COG1846 Transcriptional regulators 39 26 Op 2 . - CDS 47525 - 49306 1670 ## COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases - Prom 49358 - 49417 1.7 + Prom 49351 - 49410 1.9 40 27 Tu 1 . + CDS 49457 - 50665 1186 ## COG1960 Acyl-CoA dehydrogenases - Term 50787 - 50835 2.7 41 28 Tu 1 . - CDS 50910 - 51281 358 ## Mlut_02920 L-ectoine synthase 42 29 Op 1 . + CDS 50943 - 51737 118 ## 43 29 Op 2 . + CDS 51734 - 54733 2591 ## COG1003 Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain 44 29 Op 3 . + CDS 54747 - 55913 1018 ## COG0404 Glycine cleavage system T protein (aminomethyltransferase) 45 30 Tu 1 . + CDS 56031 - 56864 692 ## Mlut_02960 micrococcal nuclease-like nuclease 46 31 Tu 1 . - CDS 56876 - 57712 569 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 47 32 Op 1 . + CDS 57513 - 57884 168 ## Mlut_02980 hypothetical protein 48 32 Op 2 . + CDS 57906 - 59165 749 ## COG3851 Signal transduction histidine kinase, glucose-6-phosphate specific + Term 59370 - 59407 9.4 49 33 Op 1 . - CDS 59416 - 59901 468 ## Mlut_03000 hypothetical protein 50 33 Op 2 . - CDS 59992 - 61038 821 ## Mlut_03010 hypothetical protein 51 33 Op 3 . - CDS 61095 - 61940 819 ## COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase 52 34 Op 1 . + CDS 62071 - 62697 420 ## MSMEG_5079 hypothetical protein 53 34 Op 2 . + CDS 62694 - 63017 377 ## COG1359 Uncharacterized conserved protein + Term 63041 - 63091 20.8 54 35 Tu 1 . + CDS 63117 - 63752 564 ## COG3153 Predicted acetyltransferase 55 36 Op 1 . - CDS 63763 - 65760 1139 ## Mlut_03060 transcriptional regulator, TetR family 56 36 Op 2 . - CDS 65808 - 66749 494 ## Mlut_03080 hypothetical protein 57 37 Tu 1 . - CDS 66999 - 68342 1249 ## COG0343 Queuine/archaeosine tRNA-ribosyltransferase 58 38 Tu 1 . - CDS 68457 - 71492 2306 ## COG1404 Subtilisin-like serine proteases 59 39 Tu 1 . + CDS 71722 - 72669 676 ## Caci_4574 transcriptional regulator, TrmB 60 40 Op 1 . - CDS 72718 - 73680 756 ## COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog 61 40 Op 2 . - CDS 73772 - 74563 734 ## COG0518 GMP synthase - Glutamine amidotransferase domain 62 40 Op 3 . - CDS 74638 - 75210 926 ## PROTEIN SUPPORTED gi|239916869|ref|YP_002956427.1| acetyltransferase, ribosomal protein N-acetylase - Term 75250 - 75294 4.1 63 41 Op 1 . - CDS 75328 - 76227 823 ## Mlut_03190 hypothetical protein 64 41 Op 2 . - CDS 76230 - 76769 489 ## Mlut_03200 hypothetical protein 65 41 Op 3 . - CDS 76826 - 77950 1036 ## COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family 66 41 Op 4 . - CDS 78044 - 78991 520 ## COG3509 Poly(3-hydroxybutyrate) depolymerase 67 41 Op 5 . - CDS 79023 - 80570 1281 ## COG2978 Putative p-aminobenzoyl-glutamate transporter 68 41 Op 6 . - CDS 80656 - 81411 527 ## COG1402 Uncharacterized protein, putative amidase 69 41 Op 7 . - CDS 81408 - 82082 556 ## COG2186 Transcriptional regulators 70 42 Tu 1 . + CDS 82189 - 82512 240 ## Mlut_03220 hypothetical protein 71 43 Op 1 . - CDS 82525 - 84861 1678 ## COG3468 Type V secretory pathway, adhesin AidA 72 43 Op 2 . - CDS 84864 - 85469 216 ## Mlut_03240 uncharacterized membrane-associated protein 73 43 Op 3 . - CDS 85466 - 86512 690 ## COG0564 Pseudouridylate synthases, 23S RNA-specific 74 43 Op 4 . - CDS 86559 - 87809 1019 ## COG0448 ADP-glucose pyrophosphorylase 75 43 Op 5 . - CDS 87886 - 88662 503 ## COG0266 Formamidopyrimidine-DNA glycosylase 76 44 Tu 1 . - CDS 88839 - 89351 559 ## COG3865 Uncharacterized protein conserved in bacteria 77 45 Tu 1 . - CDS 89501 - 89809 203 ## COG1201 Lhr-like helicases Predicted protein(s) >gi|289557199|gb|ADCD01000065.1| GENE 1 69 - 2375 2193 768 aa, chain - ## HITS:1 COG:Rv0803 KEGG:ns NR:ns ## COG: Rv0803 COG0046 # Protein_GI_number: 15607943 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain # Organism: Mycobacterium tuberculosis H37Rv # 7 768 2 754 754 944 65.0 0 MSQQFNIETVADAQATPDVEQPWAELGLKENEYAEIKKILGRRPTAAELAMYSVMWSEHC SYKSSKVHLRQFGEKLTDEMKQHMMVGIGENAGVTDLGDGWAVTFKVESHNSPSYVEPYQ GAATGIGGIVRDIISMGARPVAVMDPLRFGAIDHPDTARVFHGVVAGIGGYGNSLGLPNI GGETRFDPVYQGNPLVNALAVGVLKHEDLRLANASGVGNKVVLFGARTGGDGIGGASVLA SESFDGDGKPAKRPSVQVGDPFSEKVLIECCLELFRDSLVEGIQDLGAAGISCATSELAS NGEGGMSVELTDVLLRDSTLTPGEILMSESQERMMAVVTPENVAAFEAVMAKWDVEYSWL GEVTGDGRLIITWDGEVIVDVDPRTVAHDGPVYERPYARPAWQDELQADTFRSSEAGQDL PATGEELRAAVVELMSSPNLADTSWITRQYDRYVRGNTALAAPDDAGVVRVDEETGMGVA LATDCNDRFTYLDPYTGAQASLAEAYRNVTTAGAVPLAVSDCLNFGSPENPDVMWQFAEA VRGLADGCQTLGIPVTGGNVSLYNQTGSTPIHPTPTVAVLGQLDDVLRRTPSGFAPDADG QAIYLLGETGDELDGSEFARLRGHLGGLPPKVDLKKERLLGELLVNMSRDGMIDAAHDVS GGGLAATLSEMVLRFGVGARVVLDEVLRRDGVDLFTALFSETQARAVVAVPRTEEVRFTD MTTARGYAAVRIGVVDADSAALEVQDAFTLPIAELREAWEATLPTHFG >gi|289557199|gb|ADCD01000065.1| GENE 2 2372 - 3166 664 264 aa, chain - ## HITS:1 COG:MT0813 KEGG:ns NR:ns ## COG: MT0813 COG0047 # Protein_GI_number: 15840204 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain # Organism: Mycobacterium tuberculosis CDC1551 # 20 254 3 218 224 263 63.0 3e-70 MTELPLIGDYSTPATPLSGARIGVITFPGTLDDVDALRAVRLAGAEPVSLWHADADPQRT LAGVDAVVIPGGFSYGDYLRAGAIARFAPMMDAVATAAGGPEGDADGLPVLGICNGFQIL TESHLLPGSMIKNDHLHFICRDQELVVEGTDTVWTRDFEEGQTITVPLKNQDGQYVADEK TLDALEAEGRVVFRYRGWNPNGSRRDIAGIANPAGNVVGLMPHPEHAVETGFGPDTAAGP RSGVDGLGFFTSVLTTLASRGGHA >gi|289557199|gb|ADCD01000065.1| GENE 3 3163 - 3429 279 88 aa, chain - ## HITS:1 COG:MT0812 KEGG:ns NR:ns ## COG: MT0812 COG1828 # Protein_GI_number: 15840203 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component # Organism: Mycobacterium tuberculosis CDC1551 # 1 74 1 71 79 72 60.0 2e-13 MPIIVVDVMPKPEILDPQGKAINGALPRLGFTEFSQVRQGKRFELTVEGEVTDEILAQAR TAAEEMLSNPVIEDVVNVAVLDEAEGAR >gi|289557199|gb|ADCD01000065.1| GENE 4 3949 - 4212 235 87 aa, chain + ## HITS:1 COG:no KEGG:Mlut_02530 NR:ns ## KEGG: Mlut_02530 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 87 62 148 148 153 95.0 1e-36 MADYLAATWAPEHRPTAAELLPVAGEQAPRFTRLAVLEVRDGGPFQDAGTVEFVAVGTGA GGRFRLHEVSRFRREDGIWRYVDGDVR >gi|289557199|gb|ADCD01000065.1| GENE 5 4702 - 5265 400 187 aa, chain - ## HITS:1 COG:no KEGG:Mlut_02560 NR:ns ## KEGG: Mlut_02560 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 187 1 187 187 247 94.0 1e-64 MTANHSHHTAAAADSQGAAAEHASTATTDPRRDTRSRWGRSSRLGGGSGRLIVVSLVAGV VIALLIGAAAYGLASSQGDADPRFPAVMGAVMAASALPVGAALAWLALVDRTTVRGAIRD TEETIEGRWLEKAQSGAFGDLLVMLGLGTFVVALAGWQPSLPLVGAGLLLVAGASVAVRY ALQKRRG >gi|289557199|gb|ADCD01000065.1| GENE 6 5363 - 6355 666 330 aa, chain - ## HITS:1 COG:no KEGG:Mlut_02570 NR:ns ## KEGG: Mlut_02570 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 330 1 330 330 568 96.0 1e-160 MILHITLPEDWAAARRIGRYTASTRGASIDDVGFLHASDDAAQVGVVGAAIYPDRPDAFV VGLDEDELAGAGLRVRREPGDPSDPHSAEFPHVYPGEAVSGHIPWSMLTPVTDPRAEARV HREDSAEAAALLDAGWSIRSRSWGARLHLDDDADLASYRGHVAASEARGIEVRRLTAVDL PALRALDEEAAPRFPRTDGSRHEPLPDDLEARLSTPEGLAVGAFVGGVLIGFTLTFRSPD RWEVDRTAVAAEHENRGVAKAVKAATVLATHARGGREWGTGGAEVNAASLRMNAALGFRL EPAWLGLTPPMTWEEFVRAPASSSLDDKLT >gi|289557199|gb|ADCD01000065.1| GENE 7 6342 - 6761 117 139 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MCRIMARGYRPRRRRHPSGCPSRVELSGVLGARTRDNSTRVAGPPRARRRPGVSAGESPG RRGRTGFRVPGPSVLQEGLDVRGHRAGVDQLTLDRVVGDAVGLAHSIGAHRDLDVALVRR GPGHLDRLSLERQRDGVAQ >gi|289557199|gb|ADCD01000065.1| GENE 8 6558 - 8423 1450 621 aa, chain - ## HITS:1 COG:MT2281 KEGG:ns NR:ns ## COG: MT2281 COG0596 # Protein_GI_number: 15841715 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Mycobacterium tuberculosis CDC1551 # 71 557 48 518 520 113 26.0 1e-24 MTRTVPARRRTTFAAAVAAVSLAITAAAPALSAPGNGNGKGSASQGQARSNDLSTTRGNK VNDAAALAPHLVGQTLDWEACDFGSESLNARFNAIPGTACSDVTVPRDWKNPEDGRTITL RVAKTETSKGNPDRQGIALVNPGGPGGSGLPWGPAMAERAPELAEQYDFIGFDPRGVGQS TALECTYTPNAEHDVWQDTKAQVDACLENELTPYITTEQTVYDMDFIRAVLGEEKTSYIG YSYGTWLGSWYQRVFPQHAHRFLLDSAVDISRDGLQTTWDLQPRSRDRQFQDAMLPYVAR HDEIFGLGDDPMQIRQRWEDGGGTRTQLGMIVAGSFLLPAMYDTSQYLSAGSVIAAYIRI MESEAAATDPAGQRAQIERILAEARASLPAEERDSFDRFAARGLETVGEREQLVAATQAG DAVTFEGAFSAIRCQDGQWNTSQGYWTSWVDDLGRKAPWIGVLMGPSECMYWPAQTSMPA QPGGKGAPNTVIVQSELDAATPYEGGHRAAGVLRNTSLISVDNEGTHGLFPYGTECVDAP IRDYFLTGAQPAEKSLCDAVPLPLETQPVQVAGTPTHKGDIKISMRTDAVREANRITHDA IERQLIDSRAVTPDVEAFLED >gi|289557199|gb|ADCD01000065.1| GENE 9 8519 - 9589 734 356 aa, chain - ## HITS:1 COG:no KEGG:Mlut_02590 NR:ns ## KEGG: Mlut_02590 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 356 1 356 356 564 95.0 1e-159 MPEPRTAPVSPPTAVVALPADVWRAHARAHRARIARRTDPLVALRMRGEKHPVQDFLFGY YTHSPAALQRWHPGPGVLLADDDGAAARAEATELGTTPRGEWKHYRRVEAGEVAGAVVDG HPVGGWLVDVAAVLADRASGVAFTRELLARTAARAPRLGCFGLHEWAMAYRSDVHGVRHS QLPLRLGAEGTDAVVEGSRIRCTHFDAFRFFAPEARDRNEGDDGVLPTRAGMRAMEQPGC LHAGMDLYKWAYKLVPVVDSDLLADCFDLAWDIRRLDMEASPYDLTGVGDLSDGRGGYAA VQIEEPAGRAEYARRQREFAERGQALRARLLAVLDEAVGAAPGARPDAEWTSSARP >gi|289557199|gb|ADCD01000065.1| GENE 10 9856 - 12840 2618 994 aa, chain + ## HITS:1 COG:BS_vpr KEGG:ns NR:ns ## COG: BS_vpr COG1404 # Protein_GI_number: 16080860 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Subtilisin-like serine proteases # Organism: Bacillus subtilis # 292 694 233 612 806 131 30.0 8e-30 MPQNPTPARRRRALAAAVAGASLVAAPALAVSATAVELPDGSTVSSPQGEVQVQQQFEDG RYFVVLKDQPSVTAPEAGAVPGAAPKAKFDPSHPRVKNYEAKLQRQQEKVAKTHGAKAEI SFQRAVNAFVAELTAEEAQEIAKDPAVLGVAPDEQVAPDYSSTEFLGLPGKKGTWKSVYG KAENAGKGVVVGVIDSGIHPDNPFIDGQPVQPLKGKAKVGVPYRTADGQIAVLKADGTTA TAECETGPDFPASSCDSKLIGAYAFSEDFERFVPVDERAPEERISPLGVFSHGTHVATTI LGNTGVEQTIDGDSFGEGAGVAPAAHLISYKICWEDTDPNTGGCYTSASVAAVEQAIENN VDVLNYSISGSNTSIVDPVAMAFKSAAEAGIFVAASGGNSGPGPNTVNHGSPWLTTVAAE TFSNELTATVQFSDGTQLRGASSARTGVGPAEVIHASEVAAGDAEAARLCLPGGLTDEAA GKIVLCERGVNARTEKSQVVEEAGGVGMILVNTPSGSLDADIHAVPTVHMNDNGVIEKVK SSDLTATIVPGDTTGLPEDPLPQIAGFSSRGPANAVNQELLKPDLAAPGVNVIAGVSPLD PDYHGNTFGLMSGTSMASPNLAGMATLLIGKYPAWSPMAVKSALMTTAGDVYNADGTVNT DNFATGAGSADPAAAARPGLVYESGKEQWDALLRGDIAGRDVNVPSLAIPDVVGSATVTR TVTALENGRWQFSANVPGFEMTASPAVLDLKAGQSADVELTVTRTDAAVNTWTHGSMSWT TAKGKAVPEVTSPVTVKAKSATVTSAVEGSGATGSADVEITPGVTGELTPQVLGLGKVDS TVATATASNSLVSSALAVSTVTVEEGTKSLVASINAGAAGADWDLYVITPEGKQLSRATA EESETLTIANPTPGAYTVVGHLYAANGGKDTGTLETLKLREDAGNLTVSPNPVPVTSGKA TEATLSWSGLTSGTWKGLVTWDAGITTDVTVQVP >gi|289557199|gb|ADCD01000065.1| GENE 11 12966 - 14252 1196 428 aa, chain - ## HITS:1 COG:ML2323 KEGG:ns NR:ns ## COG: ML2323 COG0527 # Protein_GI_number: 15828248 # Func_class: E Amino acid transport and metabolism # Function: Aspartokinases # Organism: Mycobacterium leprae # 1 428 1 421 421 470 61.0 1e-132 MSLIVQKFGGSSVADAAGIQRVARRIADTVRAGNRVCVVVSAMGDTTDELLDLAAELTQD APAREMDILLSAGERISMSLLAMAIHAEGLEARSYTGSQAGMLTDTSYGRARIVKVNPHR VQEALDAGRVAIVAGFQGMSPESKDITTMGRGGSDTTAVALAAALGADVCEIYTDVDGVY SADPRVVPTARKLTELSSEETLEMAASGSKVLHLRSVEYARRFGVPLHVRSSFSDHEGTW ILPDPNDTITLQEGAPMEQPIVSGVAHDRSEGKVTIVGVPDVPGKAAEIFRVIAESNVNI DMIVQNISREGSGRTDISFTLPIVEGKDAMAALRAAQDRIGFQDIVSDPEIGKLSLIGAG MRSNPGVSATFFKALADAGVNVDLISTSEIRISVVTAESKLDDAVRAVHAAFGLDAEEEA TVYGGTGR >gi|289557199|gb|ADCD01000065.1| GENE 12 14342 - 15493 319 383 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225084369|ref|YP_002657150.1| ribosomal protein S16 [gamma proteobacterium NOR51-B] # 81 371 24 304 309 127 29 2e-28 MLDPAPAAGQHDGARGPACDPGRAGMAPGSSPGWIRVRARRGKDGAMTAPAPPPASPVLG VAAHDGIVAHGLARSFGAVHAVRDVSLTVPAGSVTALVGPNGSGKTTLLLILATLLRPDA GAVSVAGVDAVREPVEARRRLGWMPDTLGVWEELTCHDILASLGRLYGMGKAEASARADE QLEWVELTEFAHRPARVLSRGQQQRLSLARATVHRPSVLLLDEPANGLDPAARIRLRDDL RAMAAAGTAVLVSSHVLAELEEMSDRAVFLREGATVATQEFRAADDLARPYRIAGPDPTA RDTLVRALEARGLTATAATGAGAGQRRDGVVVQLRGEAAAAALLADLVREGVLVSHFAPE GSRLENAYLGLHLEGPRTEGDRP >gi|289557199|gb|ADCD01000065.1| GENE 13 15592 - 16746 863 384 aa, chain + ## HITS:1 COG:no KEGG:Mlut_02630 NR:ns ## KEGG: Mlut_02630 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 384 35 418 418 574 98.0 1e-162 MELRQRLRSRGWYVLLGVFFVVVGAVTLGALGLRGLGVAEMEASGLEPELAEQQMRALGR TLFDGVLLFVLTLSLLVSPALAANAISGDRAGGTLAITQVTLLRTGHLMAGKWLAAWIAS AAFLAAALPWLAVAAVVGRVSPWAVLVGLVMILVEFGMIAGIGVAVSAIAGRTLFAVVVT YLIVAALTIGTLVAFGLSLQFLQTEVRANDAEYGSMTAEPFTEAELEQMTPEEAEQAWAE YEAANPELFDGIADRCVGPVTTRTIPDPRRSGWLLAANPYAVLADASPWEAGLLEDGTRV DPGPLNLLSVGLRWTQRDPVRDVECLDGELRGLDQSGVPDRQGTWPVWPLGLAMQGVLVA GLGWWGHRRLDTPAGRLPAGTRVA >gi|289557199|gb|ADCD01000065.1| GENE 14 16790 - 17389 477 199 aa, chain - ## HITS:1 COG:ML2329 KEGG:ns NR:ns ## COG: ML2329 COG0353 # Protein_GI_number: 15828252 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecF pathway) # Organism: Mycobacterium leprae # 1 195 1 200 203 245 64.0 3e-65 MYQGAVQDLIDELGRLPGIGPKSAQRIAFHMLEADREDMLRLADAIRTVKDRVRLCSVCF NVSEDEVCSLCRDERRDRSQICVVEESQDVMAMERTRAFQGRYHVLGGAINPIAGIGPEQ LHVRELLTRLQDEAVQEVILATDPNLEGEATATYLGRLLGATGIRVTRLASGLPVGGDLE YADEVTLGRAFEGRRLISG >gi|289557199|gb|ADCD01000065.1| GENE 15 17505 - 20963 1646 1152 aa, chain - ## HITS:1 COG:ML2335 KEGG:ns NR:ns ## COG: ML2335 COG2812 # Protein_GI_number: 15828258 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, gamma/tau subunits # Organism: Mycobacterium leprae # 5 410 3 413 611 391 55.0 1e-108 MSTALYRRYRPDRFEDVIGQDHVTVPLRTALAKDRVNHAYLFSGPRGCGKTTSARILARC LNCAQGPTPTPCGECDSCRDLATGGPGSLDVLEIDAASHGGVEDARGLRERATFAPVRDR YKILIIDEAHMVTAAGFNALLKIVEEPPEHLKFIFATTEPEKVIGTIRSRTHHYPFRLVP PEPLIAYLEQLCAEEGVSVEKGVLPLVVRAGTGSVRDTLSVLDQLIAGAQEGQVSYELAV SLPGFTPEALLDDVIDAVAADDTPTVFRVVDRVVQSGQDPRRFVEDLLDRFRDLVIARAL PEEAGAILHGMPEDQVRRLSAQAAQLSRAELSRLADITNLALTDMVGATSPRLHLELLMA RLLLPASDETHRGLAARLEALERRLELGGAAPVEDGTAEGTTTPARSGTPAPDGGGSAGN AEGSGPLTGAALARAAMRRPEESAPTAPTAPPERWAPPAQPSAAEAPEGDAAAGTTGSER PQQPPQPGRPEPAEVGARAEGARRPEAGSRPEPEGRPPAQERTGAAPAPAHRPEETAAPS SPAPAPAASQVEMIRRAWPDILAALEDASRLVWMLVKDNASVAGYDGSLLTIGFQQDGPR QSLLGRGGDRVLGEAVHQVLGIRPRLDLILGGDAPTGDARAQSGARPAGPARTDRPERPA PQQSRPDRPAAQPNRPAPAPGPAPREPESSRPTPPRSAAPSTAEDDPAPPAAAPRTTQQR ETPQPSPAWTPAAPATTWGPPPTSSTTPAPAPPTDGWGGPDEEPPAWDDAPPPEEDPWDS LPAFDPDAEQDDSDGPEGWTPPARDAEERPVGAAGWDGPVPSVEDWGAPPQAAPAPGGAA PDAGQDSPARPAAPAPGEGEPSAEEVRRAYDPGPLVREEEHSIPVFARPEAELRAEFAKR FGATRPAGFDDGAGAAADGDSARPATPSPAPDDDAAATERRDPHPAASGAGSSSDEQRRP TGAPTADATPDPGVPADDADATPRTAAGSAGSDFPGSGHPASMYPRLMERLRAGGPLEPP VNAGSSGGTGGPGAPDGPDPDATPGSPAGGRPSAASLGARPADAEPAGGASAPPSLDARA AAIRAAREAAQGRGPARPADTGPAAPATSGVGWEDEVASDDDVPLEDSGLVGRAVIERVL GGRLLEERPNDA >gi|289557199|gb|ADCD01000065.1| GENE 16 20448 - 21707 647 419 aa, chain + ## HITS:1 COG:RSc1004 KEGG:ns NR:ns ## COG: RSc1004 COG0778 # Protein_GI_number: 17545723 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Ralstonia solanacearum # 224 419 4 195 195 122 36.0 1e-27 MGAGADGPDDLLRLRGGEDELQVLRRLLHDLEQRVEPRRGDHVRLVDDEDLVAVPDRGER GPLAQAAGVLHTAVRGRVDLQHVQRARPAGGQVPARVALAARRGRGALGAVQAAREDAGG RGLAAAARAGEEVGVVHAVLRQCGAQRDRDMVLPDHVLETVRAVAAIQGGAHPRKPIRRA DGLREPGNAHARRPVPWPMTTTHMHTDAEDTIHPTQPAPDAGPLSQAEIDRLFADRHTTQ LFSDEPVDLALIERAYADLRWAPTAMNNQPLRLDVVDSPEARARLAPLMIEFNREKTERA PLTLIASYDLDWHRHMGHLAPFREGFEEDAEGKPGMREGMGRTNALIQVGYLLVALRAHG LEVGPMAGFDAAAVDAEFHADRAWKSLLVINVGHAAADDEKAQQPRQGRLDFAQAAQVL >gi|289557199|gb|ADCD01000065.1| GENE 17 21747 - 22733 718 328 aa, chain - ## HITS:1 COG:Cgl0237 KEGG:ns NR:ns ## COG: Cgl0237 COG0008 # Protein_GI_number: 19551487 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glutamyl- and glutaminyl-tRNA synthetases # Organism: Corynebacterium glutamicum # 3 325 2 293 293 238 48.0 2e-62 MPAGRYAPSPTGSLHLGNLRTALVAWLAARATDRAFLLRVEDLDRVRSGAEAGQRADLAA VGLDWDAEPVRQSERTALYDAAVAALRAAHGPDAVYECFCSRKDIAEATSAPHPRPDDGA PASGGTVPLRPPGFYPGTCRGLTEAERAERRRARPAALRIDAAKVAGLPAGEIPRATAVD VLHGEVTGLVDDLVLRRNDGAYAYNLAVVVDDLAQSVDQVVRGDDLLDSAPRQRWLAEAL CAARGVPTPAVAYLHVPLVLNAEGRRLAKRDGAVTLEDLAAQDPAWTPERVRDRLLESLG LPPGPLAAAVPAFDPAALPRDPWVFTGL >gi|289557199|gb|ADCD01000065.1| GENE 18 23285 - 24847 680 520 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|145634045|ref|ZP_01789756.1| 50S ribosomal protein L21 [Haemophilus influenzae PittAA] # 1 466 1 440 456 266 34 3e-70 MSFADLITAVNDVIWSPALIWLCLIVGLYFTIRTMFLQFVNIPDMVKQLREGQDSADGTS SLQSLMMSLAGRVGMGNIGGVATAIAFGGPGAVFWMWVMALLGAATSFIESTLGQIYKER DPDTGEYRGGPAYYFEKAYKHTAAAPAFKVYAILFAVVTVFATSYFLPGVQANGVAAAVG EAWAVPAWVVALAMVILLAFIVLGGVKRIATFAVYVVPVMAVLYIILALIVLFLNFDQIP EVFGSIFASAFGVHAVFGAILGLAIQWGVKRGVYSNEAGQGTGPHAAAAAEVSHPAKQGF VQAFAVYIDTLFVCSATAFIIISTGAYRVYSDGSGSGLLFEGIVSPTASEGPAFVQTGFD AVFSGFGPTFVAVALAFFAFTTIVAYYYMAEVNLVYLTRNLRNGMVRRVVLRFLQALILV SVAYGAVATTGAAWGLGDIGVGSMAWLNILGILVLQGPALKALKDYRAQKRQGLDPQFDP RPLGIRNADFWEHRADGLITQGVAGTAEHPVVAEGGAHRA >gi|289557199|gb|ADCD01000065.1| GENE 19 24935 - 26707 1618 590 aa, chain - ## HITS:1 COG:YPO1358 KEGG:ns NR:ns ## COG: YPO1358 COG0028 # Protein_GI_number: 16121638 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] # Organism: Yersinia pestis # 22 585 4 570 573 638 56.0 0 MPRPCRTGPGASRPERGSTVATVAQNIVETLHASGVRRMYGVPGDSLNGLTEALRSHGGI QWVHTRHEETAAFAASAESQLTDELAVCVGSCGPGNLHLINGLFDAQRSRTPVLAIAAHI PSEEIGSGYFQETHPQDLFRECSVYVEHVSSADQMPRMLRTAMRAAVEQRGVAVLVIPGD VALTELSAKPEVIRHTPSRVIPADSVLREAAEALDSSKRITILAGAGAAGAHDEVVALAE RLQAPIVHALRGKDRIEYDNPYDVGLTGLLGFASGYHALKEAETLLILGSSLPYRQFYPE DATVIQVDVRGEQIGRRVAVDVPLVGGVKETAQALLPLLRGNSSSAFLDKALKHYAKTRK DLDQLASPGRGRVHPQYVARLLDELADDDVVFLPDVGSPVIWASRYLTMNGRRRIIGSLS HGSMANAVTQAVGAQAVDPTRQVVAMAGDGGLAMMLGELLSFVQNDLPVKTLVFDNDSLN FVELEMMAAGFVPYGTGLENPDFAVIAEAVGIKGFRADHTTDLPAVMREFLAHDGPALLV VKTERQELTIPPSIEFEQAKGFALYAMRTVLDGKGTKLLDLAKANLRQLF >gi|289557199|gb|ADCD01000065.1| GENE 20 26781 - 27677 766 298 aa, chain - ## HITS:1 COG:no KEGG:Mlut_02720 NR:ns ## KEGG: Mlut_02720 # Name: not_defined # Def: predicted HAD superfamily hydrolase # Organism: M.luteus # Pathway: not_defined # 1 298 1 298 298 530 96.0 1e-149 MRTSSPIGLLLDVDGPVASTETRTVPEGIIDVLVRLARRGVPVGFNTGRSTDFLLHNLIA PLRDAGLPDDAPFHAICEKGAVWFPFSAVPSGDLPDVTVDGTTPDWLRTDPDMAIDADTR DAIWALNDERAGDLQFTDRTKLAMVSLEKTVGADQTEYERVRDDVAAGVEDLLAERGLAE DVRVAPSLISVDVEHRSSGKDLGVERCFDLLAQAGTPVPERWLTAGDSRSDYAMADRLHE RGLAVEHMDVRPADGVPEKPYGVVTAAILAERGIGDADDVHERAGESLLRWVERDLLR >gi|289557199|gb|ADCD01000065.1| GENE 21 27792 - 28724 771 310 aa, chain + ## HITS:1 COG:no KEGG:Mlut_02730 NR:ns ## KEGG: Mlut_02730 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 310 1 310 310 417 98.0 1e-115 MSTATDLGPSRSPFGPDAAARVPSSGTGLSSTGGRVAMLLVVILAVVAAFLGSGVVGGLT PVAEAAGGWLGPDATWVSPATPAFGIWSVIYAGLLAYAVWQFLASAQSARHDRLRPWILV SVLLNAAWIWTVQAGLLGLSVVVIALLLACLAWILVLLESVRAHSWGERILLDGVQGLHL GWVSIAAVANLAAWLASTGVVGDPGQSSLWAKVMLVVAVLIGAFTAVYNGGRPAPAFALA WGLVWIGVGRADGTGLLSGSLALLAWGGAAIVLLCWLAALLLSRRSATGEARDLVLDALD GGGDPIDGRR >gi|289557199|gb|ADCD01000065.1| GENE 22 28873 - 30261 992 462 aa, chain + ## HITS:1 COG:SA1160 KEGG:ns NR:ns ## COG: SA1160 COG1525 # Protein_GI_number: 15926905 # Func_class: L Replication, recombination and repair # Function: Micrococcal nuclease (thermonuclease) homologs # Organism: Staphylococcus aureus N315 # 56 184 43 171 177 94 40.0 4e-19 MPPRLRGRASLAAVALSALLLTGCTPSEPAEAGIPSTGDGGAPSAQPVVAQPSSTLEAGD PATVVRVVDGDTIVVRKDGQEETVRLLNIDTPETKHPNKAVQCLGPEATQALETILRPGD DVVLRYDLERTDRYGRTLAGVFEDEMLVNAEIARQGLGVPVVFEPNRRFYPEVLAAWNEA EGEQAGLHQPDLACSLPVITDAAAAEPDETLIGELATVLAVVAAGEQPWMEVHYKDELDR VQRVVDDHRRRADQAAEQAREAERQADQKAAAERKAAAEQAAAEEARAAEAAREAEEARA AEAAREAEEARAAEAAREAEEQSAAEAAAAEARAAEEAAAEAAESRAEETEVSTWADTSS SGSGSNSNKAPNRCYAPGGETFEYCGDEESSSDSTVEAATSGDTGSVAGSGGVCPDGYPV KANDNSGIYHVPGQQHYGKTNARNCYASAAAAQAAGYRASKR >gi|289557199|gb|ADCD01000065.1| GENE 23 30503 - 31408 527 301 aa, chain + ## HITS:1 COG:SA0746 KEGG:ns NR:ns ## COG: SA0746 COG1525 # Protein_GI_number: 15926468 # Func_class: L Replication, recombination and repair # Function: Micrococcal nuclease (thermonuclease) homologs # Organism: Staphylococcus aureus N315 # 47 199 58 217 228 75 32.0 1e-13 MPTTPTPSVDAAATSRAAASSLAASSAAQSSRAAASSSSGAAESRAAHAAEESRAAEVSR SAGPTAPAAPADVEGDVVTVESISDGDTIRVTLGEVSTRVRLLNIDTPETRHPSKPVECM GPEATAALTSMISPGDTVVLRYDRRLHDRYDRLLAGVYADGVLVNAEMARMGYGEPAVFD GNDRFLPEVEAAWEEARANGVGRFSGECGTAAEPIPEAAPAPEAAPAPEAAPAPEAAPAA GDAGPVSGADSVCPDSHPVKANDNSGIYHVPGQQHYGRTNARHCYASAAAAQADGYRAAQ R >gi|289557199|gb|ADCD01000065.1| GENE 24 31502 - 32599 968 365 aa, chain - ## HITS:1 COG:Cgl0927 KEGG:ns NR:ns ## COG: Cgl0927 COG1295 # Protein_GI_number: 19552177 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Corynebacterium glutamicum # 6 359 12 364 368 256 41.0 4e-68 MAIHPVDATLEAAKIDPDQRAERLKGVKLDGAGWKYALTRALKEFGNDGGTDLAAKLTYY LVLSLAPSLLAVFSILSLVLASNRGAIDDLLGQLTGLVPSDYQPLVTNLVTTMSESAGSG GGIIALIIGIATALWSASAYVKAFNRSANTVYGYEEGRGLVKLTLTNLLTTLILIVGIAV VLLSLALNRSLVDGFLQPIAGPLGMTGVVNFLSDTFLPVWAWVKWPVVVLILLVLIATLY YTTPNVQKPRFHLFGPGNIVALVGMVLAAVALSVYFTQFAGYSAYGAIGTIMALLFALWI FNIVLLLGLEVDTEVERALQLEAGLPAEARVQLPPKDVAAVEKRAEKQTTVEERGYELRA VHEGR >gi|289557199|gb|ADCD01000065.1| GENE 25 32706 - 34124 1246 472 aa, chain - ## HITS:1 COG:PA2443 KEGG:ns NR:ns ## COG: PA2443 COG1760 # Protein_GI_number: 15597639 # Func_class: E Amino acid transport and metabolism # Function: L-serine deaminase # Organism: Pseudomonas aeruginosa # 1 472 1 458 458 531 62.0 1e-150 MALSVLDLFSIGIGPSSSHTVGPMRAARRFTDSMGQHGVLERTARVHAELFGSLAATGVG HGSDTAVLLGLAGQDPETIDPDACTGLVEEIVTGGRLPLDGRHEIAFDRRGDLTLHMRES LPGHPNGMRLTAYDDAGEQFHTRDYYSVGGGFVVTSDELEAELDATRDVNRADDGDTGEP YPFSTGAELAVRCHEAGLSIAELMLANEATRHDLDELRTQLLAIWAVMEECVHNGVTRTE PILPGGLQVRRRAPALREHLLQTTNRTDPMWAMEWVNLFALAVNEENASGGRIVTAPTNG AAGIIPAVMLYYMRFVLPEGATQQERDDKVVEFLLTAAAIGILYKRNASISGAEVGCQGE VGSACSMAAGALCAVLGGTVDQVENAAEIGIEHNLGLTCDPVGGLVQVPCIERNAIASVK AINAARLALLGDGSHRVTLDQAIKTMRDTGADMKSKYKETSRGGLAVNVIEC >gi|289557199|gb|ADCD01000065.1| GENE 26 34309 - 35079 713 256 aa, chain - ## HITS:1 COG:Cgl1199 KEGG:ns NR:ns ## COG: Cgl1199 COG0494 # Protein_GI_number: 19552449 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Corynebacterium glutamicum # 1 234 40 247 266 96 32.0 4e-20 MAFSAHATAFPGGRVDPADDLPDRLWEGTDLADWGRRLGLPHEPVDAHGTLTELDPAEGA GLVLAAAVRETFEETGVLLARDAATGTPVDPARVAALPDELRDAVERHEVDFGELLDREG LRPDAGALVPWSRWITPHGGPRRYDTFFFAVHLPQGQSPERMSSEAASHGWASPAELLRR FRAGEVNLMAPTWWQLRTLVDAGGDIHAGRSRFEPLEGVMLVAGQGPVFPHADEYLRDLT AFRAAAQVEESKDNIL >gi|289557199|gb|ADCD01000065.1| GENE 27 34756 - 35406 157 216 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MALDGVAQLVGERGHPGRVHGGAGGGVPGQEHSGLLERLADGGGQHEAGALGGVELREGA VGVHGLVRQPQAPAPVGQIRALPQPVRQVVRGVHAAAGEGRGVGAEGHGPGAADGEHRGL AAGPGPDQHEGGGGHRRDPGPVLGGRRLGGRDGGAHGASSVRAIMVRTHGPTTAAPVAPA RGSCGPDVRGPVVCSVSHRARGGGPGARPRPKEERP >gi|289557199|gb|ADCD01000065.1| GENE 28 35403 - 36185 658 260 aa, chain + ## HITS:1 COG:ML1712 KEGG:ns NR:ns ## COG: ML1712 COG2086 # Protein_GI_number: 15827916 # Func_class: C Energy production and conversion # Function: Electron transfer flavoprotein, beta subunit # Organism: Mycobacterium leprae # 3 260 4 266 266 175 44.0 7e-44 MKILVLAKQVPDTWQERELSLETGWVVRDGAAEPVPDEISERVMEVALGWRDAGADVEVV ALTVGPEDSSKTLRKMLAMGADSAVQITDDALVGSDAVQTARVIAAAVEKEGADLVLAGT VSTDGGTGVVPAMVAELLDRPYLPHAEAPELADGELTGTVATSDADVRAAVVLPAVASLT EKTAEPRFPNFKNIMAAKKKPLTVLSLADLGIAAGPAEAAYRSVMVSADTRPERAAGEKI TDDGTAAERLVEFLAGRGLV >gi|289557199|gb|ADCD01000065.1| GENE 29 36209 - 37219 831 336 aa, chain + ## HITS:1 COG:MT3112 KEGG:ns NR:ns ## COG: MT3112 COG2025 # Protein_GI_number: 15842591 # Func_class: C Energy production and conversion # Function: Electron transfer flavoprotein, alpha subunit # Organism: Mycobacterium tuberculosis CDC1551 # 22 336 11 318 318 184 46.0 2e-46 MTTQTDAANSGQTVLVHAEIGADGALRPVVAELLGAAATVGVPEAVLVTGAEGRDAAVAR LGEYGATRVHVLVADDAATTLGDAAVQALAAAAARTAPVAVLLSGSPESRAVAGRLSVRA RGPVCADAVGLRWADDEVIARHSVFGGDYLSESTGEGGPRIITVRPGAVADRAPAVEAPE VVELAAAELGPVTAGARVLEVNARTQNSARPPLRGAKTVVAGGRGVGSEEGFAIVEQLAD ELGAAVGASRAAVDSGYTAAERQVGQTGVIVSPNLYIALGISGAIQHLAGMKTAKTIVAI DKNEDAEIFEHADFGVVGDIFQVVPQVIEQLRTRRG >gi|289557199|gb|ADCD01000065.1| GENE 30 37272 - 38996 1301 574 aa, chain + ## HITS:1 COG:no KEGG:Mlut_02800 NR:ns ## KEGG: Mlut_02800 # Name: not_defined # Def: thiosulfate reductase cytochrome b subunit (membrane anchoring protein) # Organism: M.luteus # Pathway: not_defined # 6 574 1 544 544 667 91.0 0 MPKQRMAGYVPLKGAPAETEPAPTPAQDTTTAAPAPVVAPAVPVAPTAPASGLTPLSARR RMAGYVPFAREAEWLGGAPAPAAGSTPPAAPAVPVAPEPIAASASPTRAPAPAETEPVVP DVAAAVAASATGAPAAAGVGAPVESDLVPLAERRRMAGYVPFAREGEWFTELAAVGAPTA PETVAQEVVAPESVTAEPAAAAPARPVAVEPADAEPAVAAPVAAASAAEPAPTAPDTRSA PPASAAQPPRAAPGAATGTPARAAETDAAESAAPSRLRKALPAVAGVVVLALLAVLAGRW LRSLDPVADFIATYDGHPVLPEGTPEGMPWWMGWQHFLNMFLMVLIIRTGLQIRHETRPP ANFTPTKDGLFSARGNTPKKFSLTIWMHQALDALWLLNGVIFVVLLIATGHWARIVPTDP HVFQHAVSAGIQYLSLDWPTENGWVHYNALQMLSYALVVFVAAPLAALTGWRMSSWFPTE ATGLNKAFPMEVARKVHFPVMVFFVAFILVHVFLVAFTGLLTNLNHMYTSRGGATDAWGL VVFLVSVAVTAAAWFFLKPAFTAPVASRFGTVGR >gi|289557199|gb|ADCD01000065.1| GENE 31 39127 - 40119 746 330 aa, chain - ## HITS:1 COG:no KEGG:Mlut_02810 NR:ns ## KEGG: Mlut_02810 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 16 330 1 315 315 491 96.0 1e-137 MICRVATGPWASVLPVQTTTSPTADSPTGPRSHASGRTEQLFGIRRHALMTERDGALNPA AFEVGPWCLDLDGRPTGAAATVIMDNATAVAVHHAARDIETVVTTELQVNVLRPLPAFDA AAVTAGDEDGPLLECWTRPLAWDAGGGVARAWLEDADGGRVVEATGWFQSVPAGAPERMA EFVAAGRLPRGAETRVPMPGLLAARPESLPTAAPDVRPAVAAAATAGVRFAPKPELANPS GAVHGGAMTLRAVTAAQAAMPDRERYDVQAVRVVFVRPGHGEMVALTRVRHAGRSLRLVD VDLVPVGADGDPVADKPMVQVQVTFRAARS >gi|289557199|gb|ADCD01000065.1| GENE 32 40123 - 41373 1179 416 aa, chain + ## HITS:1 COG:BMEI0689 KEGG:ns NR:ns ## COG: BMEI0689 COG1960 # Protein_GI_number: 17986972 # Func_class: I Lipid transport and metabolism # Function: Acyl-CoA dehydrogenases # Organism: Brucella melitensis # 37 416 5 384 385 481 61.0 1e-135 MSYYHGDDSHTLSPPAVSPPPHPVVDRPRGRTEPQEDEPMFPITDDQKALVDAVRDFAEQ RVAPHALDWDAEKHFPVDVLAEAGELGLGGIYVGEEHGGTGLERTDAILIFEELAKADPA FAAYISIHNMVAWMIDSFGSDEQRARWIPDLVGMAHLASYCLTEPGAGSDAAALKTRAVR DGDHYVLNGVKQFISGAGASDCYVVMCRTADTGARGISAVVVHKDTPGLSFGPNEKKMGW HTQPTRQVIFEDVRVPVADRLGEEGDGFRIAMKGLNGGRLNIGACSIGGGLAALDKATRY LKERSAFGEPLATKQALVFELADMSVKLETAHTMLMRAADALDRNDPDTVRLCAMAKLVA TESGYEAADTALQLHGGYGYLHEYGVEKLVRDLRVHRILEGSNEIMRMIVGRGLIG >gi|289557199|gb|ADCD01000065.1| GENE 33 41462 - 42649 983 395 aa, chain - ## HITS:1 COG:ML2401 KEGG:ns NR:ns ## COG: ML2401 COG1024 # Protein_GI_number: 15828291 # Func_class: I Lipid transport and metabolism # Function: Enoyl-CoA hydratase/carnithine racemase # Organism: Mycobacterium leprae # 18 386 3 339 345 240 42.0 3e-63 MSDAQTTATTAPAAARDGAADEVLLEVRDGLGRITLNRPRALNALTQDMVRAIDAALTDW AADPAVRGVLIRGAGEKGLCAGGDVVSLRSSLLAGRFAEAEEFFRDEYAMNERIATYPKP YVAFMDGIVLGGGMGVSVHGSHRVATERTRAGMPETAIGFTPDVGGSFHLARAPFQAGRH LAATSAHASGSDAVALGLADVFVESARLDELEQALAAAFGALGSAADAGGRDEAAFAAAD EVLARFAVAEDARPASALVAGREWVEDAYGRESAAEVLAALDERAAAGGEHAEAAGQAAE AIRTKSPTAVAVAHEAQRRLAARGADLTVADALRQEFTIGTHLMREPDMAEGIRALLVDK DKDPTWSPARLEDVSAEDVAGHFEPVSGVDPLQLG >gi|289557199|gb|ADCD01000065.1| GENE 34 42646 - 43443 778 265 aa, chain - ## HITS:1 COG:BMEI1945 KEGG:ns NR:ns ## COG: BMEI1945 COG1024 # Protein_GI_number: 17988228 # Func_class: I Lipid transport and metabolism # Function: Enoyl-CoA hydratase/carnithine racemase # Organism: Brucella melitensis # 10 265 38 293 293 293 62.0 2e-79 MSEQTTPDGAESPIVVERQGRVGHIRLNRPKALNALNEATMRAVVAAVQELDTDPEIGAI LLSGSPKAFAAGADIKEMATKEFSEMYAADWFAGWDGLTRARTPIVACVTGYALGGGCEL AMMADVLVAGEGAKFGQPEINLGVIPGMGGSQRLTRAVGKAKAMDMILTGRMIGAEEAER IGLVSRVVADEKALEEALEVAATIASKSKPASWMAKEAVNAAFETTLAQGIAFERRVFHA AFATADQKEGMDAFAAKREAGWEHR >gi|289557199|gb|ADCD01000065.1| GENE 35 43440 - 44357 847 305 aa, chain - ## HITS:1 COG:AGl1448 KEGG:ns NR:ns ## COG: AGl1448 COG2084 # Protein_GI_number: 15890846 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 1 297 11 301 304 279 56.0 6e-75 MTTVLFLGLGHMGGPMAANLAAAGHRVLGFDLVPEALEKARAAGVETVTDTAAAAAEADV VLTMLPHGRLVLDVYRGEDGDGGLLAAARPGTVFLDCSTIDVAEAREAAAAAEAAGMRAA DAPVSGGQVGAEAGTLAFMVGASDEVYAEVLPLLEVMGARIVHCGAAGLGQAAKICNNMV LGVTQIAVAEAFVLGERLGLRHQALYDVMSKASGQCWSLTTNCPVPGPVPGSPANRDFQP GFAGALMAKDLGLALAALNEQGVAADLGRLAQAKYAEYAAGEGAARDFSGIIEDIRASHT DRSEA >gi|289557199|gb|ADCD01000065.1| GENE 36 44392 - 45918 1376 508 aa, chain - ## HITS:1 COG:BMEI0219 KEGG:ns NR:ns ## COG: BMEI0219 COG1012 # Protein_GI_number: 17986503 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Brucella melitensis # 14 505 4 495 498 663 66.0 0 MSEKTAPTETAPVIPHFVHGERREGASGRHSDVYHPATGSVAGRVPLASAEEIDAALASA EEGFAAWSTLNPQRRGRILLRWVDLINENMDELATVLAQEHGKTVPDAKGDIQRGIEVVE FAAGAPHLLKGEFTADAGTGIDVHSIRQPLGVAVGITPFNFPAMIPLWKAGIALAAGNAF VLKPSERDPSVPVRLAELALEAGMPAGALNVVHGDKTAVDALIEDPRVKAVGFVGSTPIA QSIYAHAARMGKRAQCFGGAKNHAVIMPDADLEMAADALVGAAFGSAGERCMAISVAVPV GEETADRLIALLRERMEDLTVGPSLDASSDFGPVVSRDAKERIEGYIAAGVEAGADLVTD GRGVVVEGHEDGFYVGATLFDRVTPEMSIYREEIFGPVLSVVRAKDYEEALTLVNEHEFG NGVAIFTRDGDAARDFSTRVDTGMVGVNVPIPVPIAYYTFGGWKASGFGDLNQHGTDGLK FYTKTKTVTTRWPSGVREGASFVMPAGS >gi|289557199|gb|ADCD01000065.1| GENE 37 46099 - 46872 661 257 aa, chain + ## HITS:1 COG:MT1177 KEGG:ns NR:ns ## COG: MT1177 COG1028 # Protein_GI_number: 15840585 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Mycobacterium tuberculosis CDC1551 # 1 257 1 250 250 229 53.0 5e-60 MDLSNQSAIVTGGASGLGHATARRLADAGAAVVVVDLPDREGETVRADAVAALGPHARFV TGDVTAEDTAREAVAAALEAGPLRVLVNCAGVATPGKLVGRDGPLSAEVLSRVLAINTVG TVSMMAQAAAAMRTQEPLGEDRGVIVNTASVAAYDGQIGQIAYSASKGAVVALTLPAARE LASSQIRVVTIAPGLMETPMMAGLPEAAREALSTKTPHPARLGRPEDYALLVEQIVSNPF LNGEVIRLDGAVRLEPR >gi|289557199|gb|ADCD01000065.1| GENE 38 46894 - 47451 479 185 aa, chain - ## HITS:1 COG:MT0762 KEGG:ns NR:ns ## COG: MT0762 COG1846 # Protein_GI_number: 15840145 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Mycobacterium tuberculosis CDC1551 # 8 167 6 165 165 145 50.0 4e-35 MKKPPLAQDPIREAARNWERHGWGDVARPMAAITSIMRAQQILLGRTQAALKPYGLTFAR YELLALLNFSREKRMRMSKASALLQVHPTSVTNAVDRLEAAGLVERTPHESDRRALVLAL TDEGRRVAVAATETLNAEVFGRSGFDPADVDTLIDVLGRFRAEAGDFQVDGLDAGAPATA EHTSS >gi|289557199|gb|ADCD01000065.1| GENE 39 47525 - 49306 1670 593 aa, chain - ## HITS:1 COG:RSp1265 KEGG:ns NR:ns ## COG: RSp1265 COG0365 # Protein_GI_number: 17549484 # Func_class: I Lipid transport and metabolism # Function: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases # Organism: Ralstonia solanacearum # 16 574 5 548 562 583 55.0 1e-166 MTVQDSTAVAAPSPTEVFRAARDLLVECQTDDERARTEFEWPRFEHFNFGFDWFDRLAQD PARADVPALIIAEDDGRSTERTFAELSAASNRVANWLSAQGLRRGDRLILMLNNQVELWE FMLACIKLRVVMVPTTTQMTSGDLEDRVTRAGAAWAVAGAEDLAKFAGVGEGLHLVHVPG VFAEGPARRAPDVAGHTVLSYDDAADTADELTPAEPTPADETLLFYFTSGTTSKPKLVEH THTSYPVGHLTTLYWIGLEPGDVHLNVASPGWAKHAWSNFFAPWIAEATIFVHNARKFDP AALMANMERYGVTSFCAPPTVWRMLIKADLAQLTTPPAKTISAGEPLNAEVIDQVHRAWG TTIRDGFGMTETTLQIANTPGQKVVIGSMGRPLPGMDVTLLDPLTGQEAEEGEICLRLDP RPVGLLKSYYGNQEKTGEVFRDGVFHTGDIARRDENGVLTYVGRADDVFKSSDYKVSPFE LESVLVKHPAVMEGAIVPTPDELRLAVPKAFVTLAPGHEPTAETARAILQFTLTQLPPYK RIRRIEFLELPKTISGKIRRVELRKAEVERAQTGAAPDGYGTEFREEDLELQR >gi|289557199|gb|ADCD01000065.1| GENE 40 49457 - 50665 1186 402 aa, chain + ## HITS:1 COG:DR0551 KEGG:ns NR:ns ## COG: DR0551 COG1960 # Protein_GI_number: 15805578 # Func_class: I Lipid transport and metabolism # Function: Acyl-CoA dehydrogenases # Organism: Deinococcus radiodurans # 44 402 49 414 414 273 40.0 5e-73 MTALADRPVPASGAPAVAPGLPHVDLLRLRGRLESAERARLDAIEDHLQTRVRPHLTRYW DAEEFAFDLLPGLAELGLGRLVLDGSSSLFQQLVHAEIARVDLSLSALVGIHNELNLGMI AGLGSERQKATWQGRLESFDALGAFCLTEPDHGSDIAGGLATTATRDGDEWVIRGAKRWI GAGTIADVALVWARDTADGEIKGFVVPTDTPGYEATKISGKMGLRIMQNADITLDVRLPA DAILPGATTFAATRALLRDSRMWVGWQGVGAQMGVLDVLRSYALRREQFGRPLAAFQLIQ AQIAEVAGNLAASAGMMLQVDALRQEGRMEMMHAAMAKATSTRLARSSAALARDALGGNG LLTEHEIAKIMGDVEAIYSYEGSYGMNTLIVGRALTGVSAFV >gi|289557199|gb|ADCD01000065.1| GENE 41 50910 - 51281 358 123 aa, chain - ## HITS:1 COG:no KEGG:Mlut_02920 NR:ns ## KEGG: Mlut_02920 # Name: ectC # Def: L-ectoine synthase # Organism: M.luteus # Pathway: Glycine, serine and threonine metabolism [PATH:mlu00260]; Metabolic pathways [PATH:mlu01100] # 1 123 15 137 137 240 98.0 9e-63 MYTRSRNDVEKVEWGGGTSERLLTAKDEMGFAVAHTIVRAGSSSKLQYRHHQEACYCIAG NGSVVEPDGTVHEITPGVIYVLPDHEPHDLRGGTEDMHLISVFNPAITGDEKHTLSEDGY SSY >gi|289557199|gb|ADCD01000065.1| GENE 42 50943 - 51737 118 264 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLLVAGDGGVEHRDQVHVLGAAAQVVRLVVRQDVDDARRDLVDGAVRLHHGAVARDAVAG LLVVAVLELRGRSGAHDRVGDGEAHLVLRGEEAFGGASAPLDLLDVVPAAGVHGWIAPSV GSGAEEHGPPVPATVDTGAWGDSTPPGRPFPERKRFDTPPFRQRKRSDTPRLDPSRRPCD AAYTCGILTARRMPRAGERRRASCPGRPREQAAEGANPPRESLRHPYRVGSGALESVSLR RARVRTETTDGASRPPGRRKLSGP >gi|289557199|gb|ADCD01000065.1| GENE 43 51734 - 54733 2591 999 aa, chain + ## HITS:1 COG:Rv1832_2 KEGG:ns NR:ns ## COG: Rv1832_2 COG1003 # Protein_GI_number: 15608969 # Func_class: E Amino acid transport and metabolism # Function: Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain # Organism: Mycobacterium tuberculosis H37Rv # 511 988 1 488 489 588 63.0 1e-167 MTERGGADPRRDHGRIPRRYPVTSPQTTESTTALPHERVEPKDTASAPFVARHIGPRPAD VEHMLQTLGYDSLEALVDTAVPAGIRQPKPLELPAPLTESAVLEQLREIAGRNVMKTQMI GQGFSDTVTPGVILRKVLENPAWYTAYTPYQPEISQGRLEALLNYQTMVQDLTGLDIANA SLLDEASAAAEAVLLMHRANRRRTDGVTLLDADLFPQTLSVVRLRAEAVGIDVRVADLSA GIPEDVRAEVEEKGLCGVVLQQPGDSGRIHDHAAVIAQAKEAGALVTVAADILSLALITP PGEQGADIAVGSTQRFGVPLFFGGPHAAYMAVKEGLQRSMPGRLVGVSHDDAGKPAYRLA LQTREQHIRREKATSNICTAQALLAIVASMYAVYHGPQGIARIARHAHAQAVRLAEALRA GGVEVAEEHFFDTITVRVPGRAEQVLQAAEENGVNLRLVDADTLRIAADETTVDADLVAV LTAFGLDAGSLPASAHEGAVATPAVPESLRRSSAFMMHPVFNTHHSETKMLRYLRRLSGY DLALDRTMIPLGSCTMKLNATAEMEAISWPEFCSIHPFAPDHQTEGWRFLIADLEAKLAE ITGYAGVSVAPNAGSQGEFAGLWAIRQYHLARGEGERDICLIPASAHGTNAASAVLAGLK VVVVATADDGTIDAADLDAKIAANEGRIAAIMITYPSTHGVYDADVKEVCATVHAAGGQV YIDGANLNALVGLAQPGEFGGDVSHLNLHKTFCIPHGGGGPGVGPVAVGEHLVPYLPSRE ALMTAAPHGSAGVLPISWAYIHLMGAEGLRSATAHALLGANYISRRLAPLYPTLYTGNDG LVAHECILDLRELTARTGVTAEDVCKRLIDYGFHAPTLAFPVAGTLMVEPTESEDLEEIE RFIEAMEAIHAEITAVTPETVADSVLRRAPHTLNVLMADEWDRPYSRAQAGTPVPSLRLD KYLPPVGRIDGAYGDRNLVCSCPPPEAFEGAVADTADED >gi|289557199|gb|ADCD01000065.1| GENE 44 54747 - 55913 1018 388 aa, chain + ## HITS:1 COG:BS_yqhI KEGG:ns NR:ns ## COG: BS_yqhI COG0404 # Protein_GI_number: 16079513 # Func_class: E Amino acid transport and metabolism # Function: Glycine cleavage system T protein (aminomethyltransferase) # Organism: Bacillus subtilis # 6 386 3 362 362 245 38.0 9e-65 MSDSTRNSPLHPVHEAAGATFTDFGGWNMPLKYGSELAEHKAVRTSAGLFDLSHMGEIRV TGPEAGAMLDHALSSVLSTLKPGRAKYALCLTDAGTILDDTIVYRMDDGEAGSEPDYLVV PNAGNIAAVHTALNQRASGWDAVVEDESSTTALVAVQGPQAERILARAMPEAAAQLAELK YYGHLTLTVPTDAGDVTAVVARTGYTGEDGFELFLPAASTAEAGDRGSAVWNTMLSAADE AGVELTLCGLASRDSLRLEAGMPLYGNELDTGHQPHASGVGFAVPASKEADFVGRSALVG RDDVEEVLVGLQGAGRRAARHGYAVLDESGERVGEVTSGAPSPTLGHPIALARVRRDVAA EGTSLQVDLRGRGEPFTVVATPFYRRER >gi|289557199|gb|ADCD01000065.1| GENE 45 56031 - 56864 692 277 aa, chain + ## HITS:1 COG:no KEGG:Mlut_02960 NR:ns ## KEGG: Mlut_02960 # Name: not_defined # Def: micrococcal nuclease-like nuclease # Organism: M.luteus # Pathway: not_defined # 1 277 1 277 277 448 97.0 1e-125 MTHVAARARVPLKGLLVFLAVAAVLLLLGIVTVLRGVAADAARVDIVTVLDGNTVVVNQG GTERTVVLAGVTSAGRNPEGLKVGPNLCMGEESYAWLRDRLPQGATASMTTSDEGAPEGM ESAVISIGGGTVNVAMAEAGMAAPTEVAVGKRLAEEIAQANQEAVGRGVGLYDIEEPCTY QNRLYEAQFALEQIPEDAEASLTKIDERAVEYAAGLDQVRLVQQEIRALDPENGTFADLA YGPAKESLLAEADPVVEHGMQVLKDLNTRRNEIAARG >gi|289557199|gb|ADCD01000065.1| GENE 46 56876 - 57712 569 278 aa, chain - ## HITS:1 COG:CAC2939 KEGG:ns NR:ns ## COG: CAC2939 COG2197 # Protein_GI_number: 15896192 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Clostridium acetobutylicum # 54 273 2 215 215 161 35.0 2e-39 MAPVCMTPVTNGARRAQAAPRHGADDGRRAPRPRPDADKVACATAPVTLTCVSEELRILI ADDQPLMSGALRVLVDSAPGMTCVGVVANGVEAVEACAAIEPDVVLMDMQMPLMDGVEAT RRIKDTHPAIRVLAITTFTSEDYLVPALRAGAGGYLLKDAEPPAILGAIQAVHRGESVLS PAVATKLLASIERDRPTVGPTSVQPGSPDGSDLTERELGVLRLLARGQSNPEIAANLFVS ESTVKANLTRIMAKLEVRDRVQLIIRAAQLGLVTLALD >gi|289557199|gb|ADCD01000065.1| GENE 47 57513 - 57884 168 123 aa, chain + ## HITS:1 COG:no KEGG:Mlut_02980 NR:ns ## KEGG: Mlut_02980 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 67 123 1 57 57 64 96.0 1e-09 MSGWSSAIRMRSSSDTQVSVTGAVAHATLSASGRGRGARRPSSAPCRGAACARRAPFVTG VIHTGAMKTRALLASALLLASTLVGAPAAAASAASAEDDVVTTLGLGKGTAEWTCRHFGI WCD >gi|289557199|gb|ADCD01000065.1| GENE 48 57906 - 59165 749 419 aa, chain + ## HITS:1 COG:VCA0683 KEGG:ns NR:ns ## COG: VCA0683 COG3851 # Protein_GI_number: 15601440 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase, glucose-6-phosphate specific # Organism: Vibrio cholerae # 136 401 235 495 527 76 27.0 8e-14 MPDSSPSTPSVRSGAPSRARRSSAWRQARSLRWRAFWAAAPLSRVYLAFGSAFLLASTAS DLGLFGPGHGVIPVLDGIAIASATSAFLAQWWRSTVGFALLLPGAVATVVGGSEVLFAVV APVVLGAVAATARSWGFVVTAAVLALTWGVAQPFAVGQANATWFILLLMSMGLGGGLFIR ESLTRRERDRRRVFEAEERARLAAEAERRSLARDLHDVVAHNLTIISMQARTARYLGTPE AAQGVLDVVGDSAKDALRDLRRMLSILQEDGIVDPSGEPGAAGGADGATSADPVLSVARL AEELRSLGMTVETDVRCDQNAMPISVRSTLHRVLQEATTNVAKHAGEGARVRIELRDAGS DVVLAVENTVTERSGRPQWNSSGVGLNSMRDRVATFGGTIEAGPGGWGWRVRAVLRRSV >gi|289557199|gb|ADCD01000065.1| GENE 49 59416 - 59901 468 161 aa, chain - ## HITS:1 COG:no KEGG:Mlut_03000 NR:ns ## KEGG: Mlut_03000 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 161 1 161 161 182 98.0 5e-45 MTTPAPVASAARARRRAARSGPRPQLRMGLNGFLVAWLLPNLVMAAVVAVLAVVPGLQAF GSLTPLLTVVGVAGLVVGLPLCLLVNWAFRHVLNQWVHVLAYALIGMLYGLVVLTQGAAG ILPMLIPVIGFPAAVLMALGRTAARPLVRTVTPEPSPAEPA >gi|289557199|gb|ADCD01000065.1| GENE 50 59992 - 61038 821 348 aa, chain - ## HITS:1 COG:no KEGG:Mlut_03010 NR:ns ## KEGG: Mlut_03010 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 348 1 351 351 480 96.0 1e-134 MKLPSPAPSVPGEVHHSAYFPVDGVEAVFPALRQRALAPGGRLYGLAAAAAVGGLTLLDP HARRGRERRALAELEAAVSGTFLAAETASALHTAAIADGEVAPSPAARALRGLGGLAVGG AAAAVALRTTGLNDRIDGAVVRGLQRVGVPAPRVALAAAASLAMLLANEDARRTRRDAVE LAVTGPAGLDEDTVDEAEATAELPVEVRVLLETLLDPALAEGRDLPGAEALRSQLPHART VTSVAEAIREAGEVPDWVPLVVQTDDDVRRAVPNDCVWPVRGRFASGSAGGHELELRLQV IDGEIGALTVTLPADAEADSDAWDAFQEIESFPGVEDLTFHVDGDRRA >gi|289557199|gb|ADCD01000065.1| GENE 51 61095 - 61940 819 281 aa, chain - ## HITS:1 COG:Cgl3018 KEGG:ns NR:ns ## COG: Cgl3018 COG0351 # Protein_GI_number: 19554268 # Func_class: H Coenzyme transport and metabolism # Function: Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase # Organism: Corynebacterium glutamicum # 18 274 5 260 266 261 53.0 1e-69 MPQTAHSPQHSASAPALALTIAGSEATGGAGAQADLKTFQELGVFGIVALTCIVSFDPED DWNHRFFPVPTEILQQQLDAIQGDYPEQLRTVKLGMQGSPEVIRTSAAALRRAEWDHVVL DPVLICKGQEPGHALDTDQALKAELLPLATFTTPNHFETEQLSGMTVRSVEDLTAAARRI HEISGAAVLAKGGMHLPGPDAVDVFVDGDTVEVLSAPKIGQSGISGAGCSLAAAVTAELA KGATALEAARRAKEFVRAGIAQAVEGRTPFAALWQGGLRSA >gi|289557199|gb|ADCD01000065.1| GENE 52 62071 - 62697 420 208 aa, chain + ## HITS:1 COG:no KEGG:MSMEG_5079 NR:ns ## KEGG: MSMEG_5079 # Name: not_defined # Def: hypothetical protein # Organism: M.smegmatis # Pathway: not_defined # 2 160 1 159 205 145 61.0 6e-34 MLEFLTGTGLATSAGLNAYIPLLALGLLDRFTGLVDLPAGWAWLSADASLWILGVLLALE LVADKIPGVDAVNDAVQTVVRPAAGGIVFASGVGTETTAVHDPGTLFAGSGWVPVIIGAG IALAVHLAKAGTRVGANTVTVGAAAPVLSAAEDVSAAGLVAAALFLPVLVAVLVVAVVVG LWLLARRFRDRRTRGRAAAVPGGPEWSA >gi|289557199|gb|ADCD01000065.1| GENE 53 62694 - 63017 377 107 aa, chain + ## HITS:1 COG:MT1149 KEGG:ns NR:ns ## COG: MT1149 COG1359 # Protein_GI_number: 15840555 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Mycobacterium tuberculosis CDC1551 # 1 106 1 106 107 89 43.0 1e-18 MILINLKFTVQPERADEWMDAVAKYTADVRSEPGNLFFEWYRPVEGGPNEYFLLEGFTDE GAQAHVASPHFQEGLDAMRPLLASTPQIISEQVGVEGFGPMGELQID >gi|289557199|gb|ADCD01000065.1| GENE 54 63117 - 63752 564 211 aa, chain + ## HITS:1 COG:all1321 KEGG:ns NR:ns ## COG: all1321 COG3153 # Protein_GI_number: 17228816 # Func_class: R General function prediction only # Function: Predicted acetyltransferase # Organism: Nostoc sp. PCC 7120 # 39 201 14 170 173 84 32.0 2e-16 MSAEQNSTQTPGHRTAHVPAGQDLGHRWSTREADHDDPADRRAVRQIAELAFASTAEADL VEALAGGAEGWLPQYSLVAMTAAIPGTDLQSDPMGYGTLVRAHIDHAEVIALAPHGVLPE HQGEGAGTALVNALLQKAQADGEEVVVVYGWPEYYAKFGFHRASEHGVHAAFARQPEALQ ILTLQDGAEVPAGEFRYPPAFGAENAQVAGR >gi|289557199|gb|ADCD01000065.1| GENE 55 63763 - 65760 1139 665 aa, chain - ## HITS:1 COG:no KEGG:Mlut_03060 NR:ns ## KEGG: Mlut_03060 # Name: not_defined # Def: transcriptional regulator, TetR family # Organism: M.luteus # Pathway: not_defined # 465 664 1 200 201 303 97.0 2e-80 MRTSGNLWLTPPPARVISHERTDPRDLATDDQPLHGLGALVGVDRLDVREVAGHLVLDED AVATEQVARVRGDGPRGARRRVLGHGRHRPGEPALVLEPGRAQHEQLHLGELGEHLGQTG LHALGGGQRPAELDALPRVLHRRLVAAHGLPEGGPRDAHARGEEDAGGVLEGAGLGQDVG VGHEDAVEGDVGLVDGPQRDLALDDLGRVALGLLAHDEPADLLVLGAARPHHGHPAGGPV ADPLLVPVQPPAAVDALGAGLQRDRVGAVGRLREGEGAVELAARHGRQVLGTLLLAAAQL DRAHGQTALHARHRGDRAVQARELHHGQARCNAGDVGQPVHGDAVAQQVGLPQAGHEVQR VLVTVPRLPDPGQHVRLEGEGAGSTPHVLLGVGDVRERQVEVGVQRHGDVVLGLDGGQGL GHGGLPGGVGEMGVSVITLHRLTRHLTESDAVSLLCRARGTMARMTTPAEDTLTALIHLL DREGYDAVTADQLARQAGMSRASFFRHLGGKEEVVFADHAALLARLNDFLRGTSLGVREA LEEAVLQVFRHHTADPDRARARSRLLRGSQSLRTRELLTSHRYTELFSGWLATALPDTPA RGGIAVGLAAAVVAVHNRALRAWLHAPADDAEAGLRADLAEVIARLTAEPAEAERTLAAV RRLVG >gi|289557199|gb|ADCD01000065.1| GENE 56 65808 - 66749 494 313 aa, chain - ## HITS:1 COG:no KEGG:Mlut_03080 NR:ns ## KEGG: Mlut_03080 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 313 1 313 313 474 95.0 1e-132 MVAPPPHHDAAPSPVFPVAAGLQAGLTASQLRSPRFDAPHHGLRHTAGGQPSLADVVRAL QRTNPGTAATHATAARLWGMWLPRQWERGPIHLARTRAEGGAPRRSGVVGHELHTQDPVL VRAGVRITTPAATWAALAQLGLPLADVAAAGDSLLQRADGPAGRRRPGEHPRCTVRDLEA EVLRVRGRRGTRTLRAALPLLRDGADSRAETLLRLALTDAGVPEPEVNPLLLLRDGSTVR PDLVWREARVCVQYEGDHHRTDPQQWRRDIERDRRMQAEGWIVLRVAASVFTRRGLDALL RDLAAHLRLPLPA >gi|289557199|gb|ADCD01000065.1| GENE 57 66999 - 68342 1249 447 aa, chain - ## HITS:1 COG:Cgl0233 KEGG:ns NR:ns ## COG: Cgl0233 COG0343 # Protein_GI_number: 19551483 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Queuine/archaeosine tRNA-ribosyltransferase # Organism: Corynebacterium glutamicum # 21 446 2 416 418 496 61.0 1e-140 MSETPAAPTPQSASGAPAHPSQFGFEVTHRLETGGADGAPLGRTGVITTPHGRIQTPAFI PVATQASVKAVLPESMAELGAQALLANAYHLYLQPGDDLLDEAGGLGAFMNWPGPTFTDS GGFQVMSLGSGFKKVIDMKGPGAPEGQGADDAVAPGKERLANVDDDGVWFKSHLTGDRHR FTPEVSVGIQHNLGADIMFAFDELTTLHNSRGYQEEALERTRRWAQRCLDEHARLTGVRA ARPYQALFGVIQGAQYEDLRRKACRDLAAMRAEFPAAGELDGVASGFDGYGVGGALEKEN LGTIVGWCAQELPEDKPRHLLGISEPDDLFTAVENGADTFDCVSPTRVARTGAFYTRDGR YNLPGAKYRRDFGPLDPECDCYTCAHYSRAYLRHLFKAKEMVAHTLLSIHNERFTVSLVD RIRAAMQDGTLAELKAETLGRYYAPKG >gi|289557199|gb|ADCD01000065.1| GENE 58 68457 - 71492 2306 1011 aa, chain - ## HITS:1 COG:BS_vpr KEGG:ns NR:ns ## COG: BS_vpr COG1404 # Protein_GI_number: 16080860 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Subtilisin-like serine proteases # Organism: Bacillus subtilis # 105 663 83 596 806 129 27.0 3e-29 MTHSHSRRQQALGITSALALVLAGAASASATTDPDGSAVDDAVAAAPAPTPDPAQPRTAP ETFEDGGYIVLLAEQPVASYDGGTPGFAPTKPGKGKGRENGFQPKSANAKAYAAHLKKNQ DATLRRAGAGPDTPHTRYTTALNGFAGTFTAEEAAALSADPAVLAVVPDEIRPLDTVSSP DVLGLTGKKGLWAQVVGKKTPAQDAGRGVVVGIVDSGIRPEAPSFQDQGHPAAPADWVGG CETGDADAFPTDSCNDKLIGAKYFVNGFGTGRLAPVETLSPLDAGGHGTHTASTAAGNSG VSAVVDGVERGTISGMAPGAHVAAYKACWEGVPSGGCATSDTVAAINAAVADGVDVLNYS ISGTTTNVVDPVEVAFMHAASAGVFVAASSGNSGPTVSTTAHPSPWITTVAASTHAVYEQ TLVTGDGQRFIGSSITAPLEAETPMVYAGDVAAAGATSASAALCLPGTLDSAATAGKLVV CDRGENARAEKSQVVADAGGAGMALVNVTDAGLNADLHAIPAVHLSHTERDRLLAYVKTD RPTGRILATNEGTATRVPEVAGFSSRGPSLAAKSGLLKPDVSAPGVDVLAAYSPDNGGER FAYSSGTSMSSPHIAGLGALLKQARPDLSPMGIKSALMTTARDHASATSPFAGGAGFVDP LKALDPGLVFDSDQQDWYDYLAGQGIAWSNTGEPVSEHPIPAAELNVPSLAISELYGSQT VTRTLKNVGGNNGTWTAHVEGLQGLDVAVSPNVIRPTRGSEQDVAITVTAAGAPAGQWAT GHVVWSGPAGKQVRIPVVVRPGIADAPAAITVARDADTLELPVVSGIDGTLSTRVNGLVR GDQYTGSTVRRAVFDASDAALTAHDFAYPRGYPKVRIEAEAADPDVDLDIYVTSSWSSYP VARSVTRGTGMEVLEQSIISSAPQHRIYVVAKPGADLKDSDAPIDYTLRVFFPKDGDAGN LVFDPASADVKPGAEHVFQGTLTTDGTSVYLGTVDILHGSTVVDSTKIRVE >gi|289557199|gb|ADCD01000065.1| GENE 59 71722 - 72669 676 315 aa, chain + ## HITS:1 COG:no KEGG:Caci_4574 NR:ns ## KEGG: Caci_4574 # Name: not_defined # Def: transcriptional regulator, TrmB # Organism: C.acidiphila # Pathway: not_defined # 2 315 10 328 328 117 33.0 4e-25 MDMAGHAGLDPADVDVFRALLARPETLAADLDPAAVDRLEALGLVRRGVDGALAALPPHR PLLAEAHRAQSRADALRESAETLRAEFHRRPGAARDAVEVVVGGPEIVGAGVQIARQARR LVRGFDRGPYFHDGSLPDDAQSRSWTRGVPWRVVYEGRSLQAEPPERWEHLGSTPGETGR ILPRLPFKLLIADDDAALVGLAGAAGQGEALVVRGSLLVDTFVRLFELQWELALPIADVA RGGDDGADGRGGDVLTEVERRLVAMLSSGMTDEAMARAIGLSHRTVQRRLADLARRVGAE GRFQLGVQAARRGWV >gi|289557199|gb|ADCD01000065.1| GENE 60 72718 - 73680 756 320 aa, chain - ## HITS:1 COG:MK1411 KEGG:ns NR:ns ## COG: MK1411 COG2423 # Protein_GI_number: 20094847 # Func_class: E Amino acid transport and metabolism # Function: Predicted ornithine cyclodeaminase, mu-crystallin homolog # Organism: Methanopyrus kandleri AV19 # 40 312 28 299 325 97 32.0 3e-20 MSTPTSTAPGLPWIDGPAVRAALSPRAAVDALEAALAAGLDPEADAPRTRVATAAGQLLQ MPSTRGTEVGTKLLTLTPDNPERGLPVIQGVYVLFGAPGTPGQAPRAVLDGVELTGLRTS AVSALGVRLLADASPRHLVVFGTGVQAWEHALTLQDVFGLERVSVVGRDAGRTAALAARI TAELGVTTSAAGPEAVAEADVVVTCTAATTPLFDGTLVPEHATVVAMGSHTTDARETDDA LARRATVAVESRDSAAREAGDVTLAIDSGALAGIEDTLTLAELVAGTARRREGAPALFVT TGMPWQDLVVASAVAREVLG >gi|289557199|gb|ADCD01000065.1| GENE 61 73772 - 74563 734 263 aa, chain - ## HITS:1 COG:Cgl1505 KEGG:ns NR:ns ## COG: Cgl1505 COG0518 # Protein_GI_number: 19552755 # Func_class: F Nucleotide transport and metabolism # Function: GMP synthase - Glutamine amidotransferase domain # Organism: Corynebacterium glutamicum # 17 258 5 231 252 128 33.0 1e-29 MTTPTDAVPNPHPRPFLLVQTRPEDDAAAAEVEAVERLGGYPEGRLRVLRLDRAVQQPAA ADGLDWEAELADVAAVILPGSPFTGTDPEETKSPVQRAVEAELGRMLDVVRHRDLPFLGC CYGVGTLGRHAGGVVDNAYGESAAPVEVTLTDEGAADPLLAGVPRSFAAYVGHKEAMSAL PPGAVLLAAGADCPVQMFRLGTRQYATQFHPELDQAGILERLEIYRDHGYFAPGEYEPTV AGLAAVDPEHPRRILVNFRTLFG >gi|289557199|gb|ADCD01000065.1| GENE 62 74638 - 75210 926 190 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|239916869|ref|YP_002956427.1| acetyltransferase, ribosomal protein N-acetylase [Micrococcus luteus NCTC 2665] # 1 190 1 190 190 361 96 8e-99 MTGSAPAQLCPLRSTDAAAVLAAFHAGTVGMADPAEVTDETSARAYVDGLVQAEETDAVA VVERGTDTLIGLVAVVRDEAHGTGALTAWLHQGWRGDAIMSRAATTVADAELAEGGLERI ELAHRADGPTAGAVARAAGLRHEGTQRGRLRAGGRRLDVHRYGRLATDPLPEERVRPLPW ASDARPWADR >gi|289557199|gb|ADCD01000065.1| GENE 63 75328 - 76227 823 299 aa, chain - ## HITS:1 COG:no KEGG:Mlut_03190 NR:ns ## KEGG: Mlut_03190 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 299 6 304 304 515 97.0 1e-145 MAPVVGGYLRHLKSQDVQPGDSFLTRRGEPAPPVASTRVMRDDFGTPALVIATLEGGREV KIAHGSVIRVRTDRPEERRAVPDTTFSPVDAGSPEERIVAVGKRHLEDTELTATAARLSH GLNLRSGSQLEDVFGMAERLYLLHEDTEGTLATLGLLTNLPWDGAVGRWKSIQVALSLAS LILREEGEHIAAANLGRRLLEADEVPSEPGRAARVLEVRQRQLNEPPLYDREISRALQAR DAEAEYQWRRARFDQLLYLRARGGSETLTDGDLDSRIARELGTLRTLADELESKAATRR >gi|289557199|gb|ADCD01000065.1| GENE 64 76230 - 76769 489 179 aa, chain - ## HITS:1 COG:no KEGG:Mlut_03200 NR:ns ## KEGG: Mlut_03200 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 179 1 179 179 349 99.0 3e-95 MSVRTPDPNPGWLSDEDLYEARRRLPMVYVEAIPVRLDSLGYVTEIGLLYVADETGTFQR TFVSGRVQYRETIRAALMRHLEKDLGPLAFPQLPPSVVPCTVAEYFPAPSETGLTDDRQH AVALVYVVPVTGECQPRQNALELTWLTPEEALGEDIQAEFIGGRGDLVRQALAHVGWGR >gi|289557199|gb|ADCD01000065.1| GENE 65 76826 - 77950 1036 374 aa, chain - ## HITS:1 COG:VNG0933G KEGG:ns NR:ns ## COG: VNG0933G COG1902 # Protein_GI_number: 15790059 # Func_class: C Energy production and conversion # Function: NADH:flavin oxidoreductases, Old Yellow Enzyme family # Organism: Halobacterium sp. NRC-1 # 17 361 5 360 366 275 45.0 9e-74 MTQENAAAQNTVAPNVFEPIEINGVRVRNRLILPPMCQYSCEARDGVPHGWQFQHLGARA AGGFGIVVAEATAVTPEGRISPWDTGLWNDEQQDAWAPIAAFIASEGALPAIQLGHAGAK ASTVPMHPGAPAGQPILEGPDSWETLSPSGVATNSMEIRTHAMRVDEIRETVQAFADAAE RADRAGFGAVQLHAAHGYLIHQFLSPLTNTRTDEYGGDFEGRTRFLKEVVAAVREVWPAD KVLGIRISGSDWVEGGWSIEETVRLAQELQGQVHWFDLSSAGIGDTYEGPQGPGYQVPLA TAVKEGTEGILVSAVGSLTGAQEVADVVAEGRADAVCVGRAALANPNWPTAAALALDVPS EQVPMARQYFRAKW >gi|289557199|gb|ADCD01000065.1| GENE 66 78044 - 78991 520 315 aa, chain - ## HITS:1 COG:CC0847 KEGG:ns NR:ns ## COG: CC0847 COG3509 # Protein_GI_number: 16125100 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Poly(3-hydroxybutyrate) depolymerase # Organism: Caulobacter vibrioides # 8 282 31 318 337 102 32.0 9e-22 MLSRVLAAVLIGASVLAPAATAAPPAPSGPAASATGTCSGKSDAEGGPTLRHQIHSGGRE RSFRVHLPEGYEAAKPSPLVVVYHGRGSSAELTQGFSGLDGLPAVVAYADGVIGTGDGNR QAWEGAPYSAPGVDDVAFTEDLLDRLAADYCIDERRVYATGKSNGAGLVGILACDLADRF AAVAPVAGAHYATGHPDCTPARPVPMISFHGSADATIPYVGDPDRGLPAIADWSSDWAAR NGCRHRRDGIPLAEDVTERRWVGCRKGAEVRLVTVDGGGHTWPGADAYSGGGYTTQNVEA ADLMWDFFRRHRLPR >gi|289557199|gb|ADCD01000065.1| GENE 67 79023 - 80570 1281 515 aa, chain - ## HITS:1 COG:PM1104 KEGG:ns NR:ns ## COG: PM1104 COG2978 # Protein_GI_number: 15602969 # Func_class: H Coenzyme transport and metabolism # Function: Putative p-aminobenzoyl-glutamate transporter # Organism: Pasteurella multocida # 25 514 14 518 523 296 37.0 9e-80 MSTSASLHAGPDTDQQRLPAVIRALNAVEKVGNKLPHPFWLFWILCAILAVVSAVMAAAG VSVVKDGETVTVKNLISLDGLRMAVGTALEGYGTFPPLITIMVVMMGVALAERSGFLNAW MKTSVSKVPPALIVFAVAFAGTAAHVASAAAYVILVPLGGIAFKAVGRSPVLGVVVAYTA IASGYDASPVPTPNDAIFAGITTAAAQLVDPDAYVSPLSNWFFNIASSVLLALVITVVTE LVLMRRTNLEADEDADVDEGGLTLTPEERRGLRYALVVLVVGLALIVVSALPATGFLLTP EGGLDESPLLEGIAFIIAMLFGALGIAFGIGAKTIGKAADVPTLMAEGIKTLAPVLVLFF SISQFLAYFKWTNISDIASINSAEVLRDLGIPVWAIFLVLLAFMSLVNILITSGSAMWSI LAPIVVPMLMHLDVPAETTQALFRIADSGSTAITPMSPYFILALGFMQRYQKNAGIGTLA SHTLPLAVCMTLAWTALFFLWWGLGLPLGPGAPVR >gi|289557199|gb|ADCD01000065.1| GENE 68 80656 - 81411 527 251 aa, chain - ## HITS:1 COG:BH0226 KEGG:ns NR:ns ## COG: BH0226 COG1402 # Protein_GI_number: 15612789 # Func_class: R General function prediction only # Function: Uncharacterized protein, putative amidase # Organism: Bacillus halodurans # 1 249 1 239 249 114 33.0 2e-25 MKYAELTSPEVQQLVEAGAVPVLPIGALEQHGRALPVGTDTLRAEGVVDRLAQRCPEGSV VTLPPLPYGVSPHHTRLPGTVTVPARLYCDLLISLAESLADAGWQSLLIVTGHGGNRPAL TLAQQELLSRRPDFRFAWAPVTGLAANATRALDTTEVSGHSGEAETAQVLALRPDLVRSE DLKPGATRLDELAPAPRLSRVTSPSLAVTFDQYHPTGVLGDPTAVTAEDGEAILAEVLDR LEEYVQSLRAL >gi|289557199|gb|ADCD01000065.1| GENE 69 81408 - 82082 556 224 aa, chain - ## HITS:1 COG:CC0986 KEGG:ns NR:ns ## COG: CC0986 COG2186 # Protein_GI_number: 16125238 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Caulobacter vibrioides # 2 220 7 229 253 77 32.0 2e-14 MQNTSLAERLSRELVDYIRTHQLAPGAALPSARALAQQYETTLPTVREALRMLEATGIVT LRHGSGTYVGPGMDKPFLVNPYALEGTLESALELTEARLVVEPEIAAVAAQRRDGAALAR LEAALGNALEADVQHTGSHFHLALAQATGQPLLSEMLETMLALRQHDRAVIRDTYSDRPR DHAEHEAILAAVREGDPTAARALTAAHLTHIRAELRSAIQESHR >gi|289557199|gb|ADCD01000065.1| GENE 70 82189 - 82512 240 107 aa, chain + ## HITS:1 COG:no KEGG:Mlut_03220 NR:ns ## KEGG: Mlut_03220 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 106 1 106 107 168 98.0 4e-41 MPSYRARLQIGDLLPGHRPEEVMDLAEAAVQATHVLAAKDIEVVARVPRIVLRFTVPGSH RAGEDAEAAEVARRMAEAVSGVAVTGRLDVLRRDGGRWVPVPAGLGH >gi|289557199|gb|ADCD01000065.1| GENE 71 82525 - 84861 1678 778 aa, chain - ## HITS:1 COG:NMB0700 KEGG:ns NR:ns ## COG: NMB0700 COG3468 # Protein_GI_number: 15676598 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Type V secretory pathway, adhesin AidA # Organism: Neisseria meningitidis MC58 # 81 457 965 1367 1815 98 29.0 6e-20 MQDASSESRAALERLRDASAPRPDDDAPRTPAARPRRALAAPGEISRRDLRRHERALRSG RPETAAERRVREDRRADVHRAMDRLRTPGAPAQQRPRRDLSEILDRLGSPDLARFADPLV GTVERILPAPGRDPEKAAEAARRRTAAEERRRARLRAGRERAAEAARRRAAEHERLAAEA AAEAQARDAAQARDAAALQARLDEEARRAQAARVARRRREEEKQRRRRDAERRRRVAAEE KARAAAEAEARRREQEERRRREAEVAAERARVQAERRAREEAALAERERLRLEAEAEAER RRQAAEAERRRLEAERVEAERRRRAEEAERLRREAEEAARLEAERRRRQTARVRAHTVLH AERALAQARLLEDRAREAERRAAEDAARRRREHEERESRALARAARELEGPEVFPAAADR PLLSDPEERLTDEELFARARVALPEWRRRQRLSTKAQAVQAEAIAHSSAGPVTGALPLIP GYTPAPPEEPAGSPTPADRRGQALLTVVWALFVLSSAWGLGLAGRVLGLGALDAGAYPFT ADGRHGPGASVFGLSPLHPAIWPVLWLLTGMYVLRQWGRGQGASPRHRRIRGAVAGTLLA LALWFPLAVLAPGGLDVVPWLLALVLMLRVVRRLGARPAARRLARVAEDGALGVLLGTLL AGAPTAVGAALHAWGVHVDGFPTELLALLVLVALLLAALRLVLGGRGRMGVALGMAWTLL CLALPRLLPSPLGAQQSAWVGLAAAFGALLLVTAAAVRRSWARQVERDAARRPHPAVA >gi|289557199|gb|ADCD01000065.1| GENE 72 84864 - 85469 216 201 aa, chain - ## HITS:1 COG:no KEGG:Mlut_03240 NR:ns ## KEGG: Mlut_03240 # Name: not_defined # Def: uncharacterized membrane-associated protein # Organism: M.luteus # Pathway: not_defined # 1 201 1 201 201 299 98.0 4e-80 MTGGDPAGLLDALGAWFHPLTALLVALDAPIPPVPSEVVVIGSGALAAEGRVSPVAAVLA AWLGCWAGDVGLYALFRHGLADRLDRWAWWRRIHRGIRTLLVRVGPAGSLAGLSVLRFVS GGRTASMAAAGIGGIRWPVFLWLSGAGSLAWSGSMVGLGWITGRATGLPWWASAVVGMVF GTLAGLMIAGIVAHRRRGRKG >gi|289557199|gb|ADCD01000065.1| GENE 73 85466 - 86512 690 348 aa, chain - ## HITS:1 COG:PA2043 KEGG:ns NR:ns ## COG: PA2043 COG0564 # Protein_GI_number: 15597239 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthases, 23S RNA-specific # Organism: Pseudomonas aeruginosa # 5 343 3 296 300 200 41.0 4e-51 MAVPSPLPPRNGVNATRLRLPAAGWPTAQDYVLHRFGHVDPDGIRARFARGEVVAADGTA LTPATPLGVHDDLWYYRDVPDEAPLPVTHTLLHRDEHLVVIHKPHFLPTTPGGRFVQETA LVRLRNELGLDDLVPLHRLDRATAGVVMFSANPATRGAYHLLFERRAVAKTYEAVALLPD APDDGARRPGAPADPVLGRFPLTVRSRIRKDKGVLRSVVEEIPPAASGRRAGAPVRTRRA NRPHAGANAESRVELLGVGVSAGALAGRRVAHLRLTPRTGRTHQLRIHLAALGLGIAFDP FYPDLLDLAPDDVTRPLQLLSRSLRFTDPVTGGEREFTSPAELQERPR >gi|289557199|gb|ADCD01000065.1| GENE 74 86559 - 87809 1019 416 aa, chain - ## HITS:1 COG:DR1824 KEGG:ns NR:ns ## COG: DR1824 COG0448 # Protein_GI_number: 15806824 # Func_class: G Carbohydrate transport and metabolism # Function: ADP-glucose pyrophosphorylase # Organism: Deinococcus radiodurans # 13 402 34 408 444 293 45.0 6e-79 MADPFPKDPEGAVVALVLAGGTGGRLMPLTAARAKPMVPLAGQYRLIDVVLSNLAHSRLR DVWIVEQYRPFTLNQHLAGGRPWDLDGTRHGLRLLPPAQGRAEEGFARGNGHAIAQQLPL LEQFGAETVVVLSADHLYQLDLRPVLAEHARSGAELTVVTTETDEDPSRFGVVQVDDDGA VTDYAYKPEDPAGTLVATEVFVFDVAALSEVVGDLVVGEDEAATKDEGETDEDGDPVGSS LGDYGESIIPAFVARGRVREHRLVGYWRDIGTLDAYVRAHREILEGTGLDVAAEGWPLIT NPHQAPPAWVAPDARVSGSLLSPGCRVEGEVSDSVVGPGVVVAAGATVRGSLLLGDCEVP AGAVLDTVVVDVGGAVPAHEVTGRAAPAEEVVVLTPQDRGPAEDETTGSGRPGRSD >gi|289557199|gb|ADCD01000065.1| GENE 75 87886 - 88662 503 258 aa, chain - ## HITS:1 COG:Cgl0824 KEGG:ns NR:ns ## COG: Cgl0824 COG0266 # Protein_GI_number: 19552074 # Func_class: L Replication, recombination and repair # Function: Formamidopyrimidine-DNA glycosylase # Organism: Corynebacterium glutamicum # 17 257 61 252 256 103 31.0 2e-22 MRLAPPAARPGARPLTLISHLKMEGRWLVSAVDARWGAPAWQVRAVLETAEHRVLGAQLG LLTLVPTADEATVLGHLGPDLLDPAWDTPDDGAALLVEGVRRLTARPERPVGLALLDQRL VSGIGNIYRCETLLLAGIDPHRPIGDVEDVAGLVLLARDLLRANVPPAAPATGARRRTTG VRPNPGRPFGVEVLVPAGPPPGTAPGRTPGARGGTPSYWVYGHDRAPCLRCRGPVRQEDY GSPEDDARRLWWCPHCQR >gi|289557199|gb|ADCD01000065.1| GENE 76 88839 - 89351 559 170 aa, chain - ## HITS:1 COG:PA1358 KEGG:ns NR:ns ## COG: PA1358 COG3865 # Protein_GI_number: 15596555 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Pseudomonas aeruginosa # 37 170 5 132 132 91 40.0 8e-19 MSIDAAPPEDVGTAPTGTSPAPEALEDSLPHPSDPSVTPFLMFEGDAGAAMDAYLTAFVE HLPVTEVRRDLFDDSSPRGAAWAGKVLHGELEIAGQRLRFFDSFTPHGFTFTPAISLFVE LPDATTVDAIHDALLAGGGRDYMPPDDDGFSRRFAWVGDRFGVTWQLNAA >gi|289557199|gb|ADCD01000065.1| GENE 77 89501 - 89809 203 102 aa, chain - ## HITS:1 COG:MT3395 KEGG:ns NR:ns ## COG: MT3395 COG1201 # Protein_GI_number: 15842887 # Func_class: R General function prediction only # Function: Lhr-like helicases # Organism: Mycobacterium tuberculosis CDC1551 # 11 101 1418 1513 1513 66 47.0 2e-11 GPDGVVPTGHRPGRKAGAVVVLIAGRLALYMERGGRTLLAFTEEPGELRAAAEALVWALR TGRTERLSLEKVNGGPVLGTPLAEALLAAGFYSSPSGIRFRN Prediction of potential genes in microbial genomes Time: Thu May 26 07:45:12 2011 Seq name: gi|289557170|gb|ADCD01000066.1| Micrococcus luteus SK58 ctg1119142780309, whole genome shotgun sequence Length of sequence - 28422 bp Number of predicted genes - 27, with homology - 26 Number of transcription units - 13, operones - 6 average op.length - 3.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 1/0.000 + CDS 2 - 841 659 ## COG1607 Acyl-CoA hydrolase 2 1 Op 2 1/0.000 + CDS 866 - 2134 1144 ## COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes 3 1 Op 3 35/0.000 + CDS 2757 - 4124 185 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 4 1 Op 4 . + CDS 4121 - 6214 1756 ## COG1132 ABC-type multidrug transport system, ATPase and permease components 5 2 Tu 1 . - CDS 6485 - 6787 165 ## 6 3 Op 1 . + CDS 6771 - 7517 241 ## Mlut_21620 hypothetical protein 7 3 Op 2 . + CDS 7514 - 8569 733 ## Mlut_21610 hypothetical protein 8 3 Op 3 . + CDS 8566 - 9252 230 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 9 3 Op 4 . + CDS 9269 - 10363 944 ## Mlut_21590 predicted permease 10 3 Op 5 . + CDS 10418 - 11935 1182 ## COG0659 Sulfate permease and related transporters (MFS superfamily) 11 4 Tu 1 . - CDS 11946 - 12359 457 ## COG3607 Predicted lactoylglutathione lyase 12 5 Op 1 . + CDS 12503 - 13456 842 ## COG1266 Predicted metal-dependent membrane protease 13 5 Op 2 . + CDS 13458 - 14870 1078 ## COG0534 Na+-driven multidrug efflux pump 14 5 Op 3 . + CDS 14931 - 15512 426 ## Mlut_21530 hypothetical protein 15 6 Tu 1 . + CDS 15703 - 16104 231 ## Mlut_21520 hypothetical protein 16 7 Op 1 . - CDS 16115 - 17098 802 ## COG0039 Malate/lactate dehydrogenases 17 7 Op 2 . - CDS 17194 - 17958 694 ## Mlut_21490 conserved protein containing a Zn-ribbon-like motif, possibly RNA-binding 18 8 Tu 1 . + CDS 18126 - 19781 1545 ## COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] + Term 19927 - 19957 0.1 19 9 Tu 1 . - CDS 19819 - 20382 472 ## COG3981 Predicted acetyltransferase 20 10 Op 1 . + CDS 20678 - 21115 367 ## COG3564 Uncharacterized protein conserved in bacteria 21 10 Op 2 4/0.000 + CDS 21112 - 22581 955 ## COG3284 Transcriptional activator of acetoin/glycerol metabolism 22 10 Op 3 2/0.000 + CDS 22704 - 24227 1476 ## COG1012 NAD-dependent aldehyde dehydrogenases 23 10 Op 4 . + CDS 24280 - 25311 951 ## COG1064 Zn-dependent alcohol dehydrogenases 24 11 Tu 1 . - CDS 25466 - 26371 557 ## COG4757 Predicted alpha/beta hydrolase 25 12 Op 1 . + CDS 25943 - 26860 432 ## COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism 26 12 Op 2 . + CDS 26905 - 27174 157 ## COG2329 Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides 27 13 Tu 1 . - CDS 27320 - 28420 463 ## Mlut_21390 hypothetical protein Predicted protein(s) >gi|289557170|gb|ADCD01000066.1| GENE 1 2 - 841 659 279 aa, chain + ## HITS:1 COG:Cgl2532 KEGG:ns NR:ns ## COG: Cgl2532 COG1607 # Protein_GI_number: 19553782 # Func_class: I Lipid transport and metabolism # Function: Acyl-CoA hydrolase # Organism: Corynebacterium glutamicum # 1 274 61 333 339 120 29.0 3e-27 TFVRARYMGHTQFRHPVPVDRRAVVQARVVHTDGAEVHVQTRLLLPEIRNDDGDPMVATS SLVVYAAEEDGVRVTVPVWEPSTPGQIERDEQARRSTVARRAVERGMARLPFPAPGEAPE EMSTLAFLAPNTEATVGGTINAGAILRWVDEAAAVCAARWTGHESVVAVFGGGVRFVRNI HVGDLVRVEALLVNTTERSMHVALRVYASRRTGAESRLVAHSIAVMVDVSAEDQAQRVRQ YVPESESARRLQETAIELVRMRSEVSAAWTEMRRSTDPR >gi|289557170|gb|ADCD01000066.1| GENE 2 866 - 2134 1144 422 aa, chain + ## HITS:1 COG:BS_ywnE KEGG:ns NR:ns ## COG: BS_ywnE COG1502 # Protein_GI_number: 16080712 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes # Organism: Bacillus subtilis # 73 422 123 482 482 199 32.0 1e-50 MRRPSLPSLSRLPVRRLLRGAAVAAGVGLVGLPLTVAAGLTGVDMVKRRGRVRRPAQNPG VFDAHVTGSELRIFTSGEDLYEEMIAAIDGAQRIIKFETFIWKADPTGQRFMDAFNRAAA RGVEIYVSYDGFGNLVVPPRFYRQLDPRIHVFRLPAFARPIWRGVVRHSGFNHSKIMVVD DEVGFAGGFNIGDDYARLWRDTHVRERGPAVWALDQSISIKWNAHHRAGEQMSWRPPDTW DPRVTVSANQPPLLVYPIRLSYLEAIQRAQHRILINTPYFVPDQQVLEALLHAARRGVDV QVMVPEDSNHIVADWASRGFFGQMLEAGITILLYKASMIHAKTATVDGIWSTVGSANIDR LSLGYNYESNVVVVDRDFAARMEEIFALDAQQAVRIDTPRWKDRHGLARVVEALLVPLRP LL >gi|289557170|gb|ADCD01000066.1| GENE 3 2757 - 4124 185 455 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 220 442 16 234 245 75 27 3e-13 MALNFMVAVPIMAVGGIIMAIREDPGLSWLVWVSVPVLLVIVAWIVARLMPLFQRMQDNI DDVNGVMREQIQGIRVVRAFVRERHETRRFTDANAALTETSVRIGRLFVLLGPVITMILH LATSAVLWFGGERVDAGLVQVGALTAFMQYLLQILMAVMMGTFMMMMLPRAVISARRIGE VLDTVPTLGEPARPVTPARRDGALELRHVTFQYPGAEAPVLDDVSFAVAPGTTTAIIGST GSGKSTLISLLPRLYDATSGEVLVDGVPVTDLARAELTEAVALVPQKPYLFSGTVRENMQ FGAPDASDERIWAALETAQAADFVRARTTGKAEAAASGLDSRLSQGGTDVSGGQRQRLSI ARALVAEPRVLVFDDSFSALDVTTDARLRAALDRAAAGVTRIVVAQRVATITDADQIIVL DEGRVVGRGTHAELLADNQTYREIVDSQLTAEDVA >gi|289557170|gb|ADCD01000066.1| GENE 4 4121 - 6214 1756 697 aa, chain + ## HITS:1 COG:Cgl0939 KEGG:ns NR:ns ## COG: Cgl0939 COG1132 # Protein_GI_number: 19552189 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Corynebacterium glutamicum # 16 686 8 653 656 654 52.0 0 MSEHLTDEEILEIQEQGATDDWGGGPARKAKAFWPSAKRLLSLFRTEKLGLAVVAVMVLV AVVLNVWAPRVLGQAMDVIFGGVVSAQMPGGLSREQVIDGLRAQGEDQAAEMLSGMAFTP GEGIDFTELGRLILIVLAMYLVAQLFMWLQGRVLNDLVMRLVFRLREDIEAKINRLPLSY FDRGQRGDLLSRTTNDVDNVQQALQQAFASLVYSALTVIGIVGMMFWLSWQLALIALVAL PVAGVVVGVIGKKSQALFSAQWRETGRLNGHIEESFTGHELVTVFGRQRDMAARFDERNE ELYEAAFKAQFYSGMIMPIMQWVNWLGYVGIAVVGGLRVANGQMTLGAVTAFIQYSREFN QPLGQIAGMSNMLISGVASAERIFELLDEPEETPDGTPARTFVRETAPSESAFVRETAPS AASGPDGVAHLPRPLRGRVEFEHVRFSYTPEKPLITDLNLVAEPGQTVAIVGPTGAGKTT LVNLIMRFYEVDGGRILLDGVDTRTVSRGELRAATGMVLQDAVLFGGTIRENIRYGRLDA TDEEVVAAAKATYVDRFVHTLPDGYDTVIEQDAANVSAGERQLITIARAFLAQPSILILD EATSSVDTRTEVLVQGAMAALRSDRTSFVIAHRLSTIRDADVILVMEDGDIVEQGSHDEL LAAKGAYHRLYMSQFQGGEQAEEQDDDGAPAAREDAR >gi|289557170|gb|ADCD01000066.1| GENE 5 6485 - 6787 165 100 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRNEVIGAGESVRVVAVAVGARQEESCAAVLPTGVRQRLRWHRTGDGQQSSDGHAGTDLR TPLLHTHVAPPYGSRSVMIYITLYEGARPVSREFSVGPQT >gi|289557170|gb|ADCD01000066.1| GENE 6 6771 - 7517 241 248 aa, chain + ## HITS:1 COG:no KEGG:Mlut_21620 NR:ns ## KEGG: Mlut_21620 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 80 248 3 171 171 211 64.0 2e-53 MTSLRIPATAALVAAVALTLTGCVGRESAGLGGSSTVAARPTATAEKTWDASQWVPTERI EPLLTTEAEKERAYREQVARHAQGAGMPAPPQVERSGWYATSLESDRMVSTCLAEAGWPN SVGPTGGIQIDTPSESQRSAFEAAHVTCYAQHPVDPSYTQDWTDPQLRLVYDYWDQYLIP CLEAYGYTVDTSARPSKEAFVSAFYTPGRHQWWPFADSMRGVSAERQAEVAQTCPELPPQ DVFWGSSG >gi|289557170|gb|ADCD01000066.1| GENE 7 7514 - 8569 733 351 aa, chain + ## HITS:1 COG:no KEGG:Mlut_21610 NR:ns ## KEGG: Mlut_21610 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 349 1 349 351 434 81.0 1e-120 MNRPARWAALVLALVAVAALAFWAGRVTLTPPAQTEQRPAASALVTVAEQELGRVITLGV SVSREQTPAAVNALTGVVTRAGESGEVAAGEVLYAVAQKPVLVLQGELPQWRPLGEGTSG DDVAAFQRMLAATGAKVEAAGTWDEATAGAWDDWLTERGYPAADTVELGQLVVLEALPAP LSVDAKTTAVGTTLAGGENVVARPGDQPDFALEVNQEQAALIPAGTQVTVPHGEHEWKAV AGESTSDEQGLIRITLTAPDGGVVCGEDCDALPADATTSLLSQVSVVPPVSGPVVPVSAL RTQPDGAATVTVVRDGAAEDRAVTVLGSADGLAVVDGVDAGEQVRVLNGTR >gi|289557170|gb|ADCD01000066.1| GENE 8 8566 - 9252 230 228 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 32 215 13 198 245 93 31 2e-18 MTGPATPGTPAAPVVPAAFAVEDLRFAYTRAAEELFDGLTHVFTPGAVTALTGPSGRGKS TLLYVLGLMLTPTSGVVRLGDVDASTRPDRERSRLRATSVGFVFQDSELDPSRPILDSVV EPGLYAGLERQTLEDRARALLERFGLAHRADHRPGQVSGGQAQRVAVCRALVNAPAVVLA DEPTGNLDPDNAGLVMAALADAAAEGRTVVVATHDPAVVARADEVVRL >gi|289557170|gb|ADCD01000066.1| GENE 9 9269 - 10363 944 364 aa, chain + ## HITS:1 COG:no KEGG:Mlut_21590 NR:ns ## KEGG: Mlut_21590 # Name: not_defined # Def: predicted permease # Organism: M.luteus # Pathway: not_defined # 1 364 1 364 364 374 84.0 1e-102 MNLRTLLREAVTAARTSPVPSALVLLVVAAMCFAAVATVGRQAATEAAVAAELSGPGARV LTVTDTGGTGFLTGATAATLAGLDTAEAALARDSPMDAVNTGIGRGGARVAVTNVVGTLD RGIELTRGRLPAPGEVVVPEAKLAELGLAQPSGAIEATDGRQWAVVGAFQAQDPFQDLDG YALTVPAAADALVMQQVRVLAADTAGTRAMQEAALAVIDPDPRASSIQTARALSAGNQVV TGELAGLGRSLLLLILGAGAFFVSIVVLADVLIRRRDLGRRRTLGIGRGDLILLVAVRTA VPALLGAVLGSGAGYAVVAGQGGTLGVDFVAAVAVLAALTALLASLAPAAFAAFRDPVRV MRTA >gi|289557170|gb|ADCD01000066.1| GENE 10 10418 - 11935 1182 505 aa, chain + ## HITS:1 COG:Cgl1438 KEGG:ns NR:ns ## COG: Cgl1438 COG0659 # Protein_GI_number: 19552688 # Func_class: P Inorganic ion transport and metabolism # Function: Sulfate permease and related transporters (MFS superfamily) # Organism: Corynebacterium glutamicum # 41 504 1 462 462 460 59.0 1e-129 MPSSASVAAPDRAPTPLERQSVMRTLRTPRWLRTEVLAGLVVALALIPEAIAFSIIAGVD PRVGLFASFTMAVTTAIVGGRPAMISAATGAVALVVAPLSHAHGVGHLLAAIILGGVIQI LLGVFGVARLMRFVPRSVMVGFVNALAILVFTSQLPELIGVPWLVYPLTALALVIVVLLP RLTTAVPATLVAVVVVTALVMAAGLAVPRVGDRGALPDALPVLGLPDVPLTWETLRLILP FSIGMAFVGLLESLLTAKLVDDITDTRSDKTRESWGQGVANVVSGLFGGMGGCAVVGQTM MNVKANGARTRISTFLAGVFLLVLVVALGGFVAQIPMAALVGVMMFVAAATFDWHSVRPA TLRAMPRSETAVMAVTVAATVLTHNLAIGVGVGVLAALVLFAQRVSRLVTVVREVHDDGD AVTYRVHGALFFASSNDLYSQFEYALDPPCVVIDMGAAHVWDASTVAALDSVLTKYAQHG IHAEVTGLNEASAAMHARLTGRLGT >gi|289557170|gb|ADCD01000066.1| GENE 11 11946 - 12359 457 137 aa, chain - ## HITS:1 COG:BH3119 KEGG:ns NR:ns ## COG: BH3119 COG3607 # Protein_GI_number: 15615681 # Func_class: R General function prediction only # Function: Predicted lactoylglutathione lyase # Organism: Bacillus halodurans # 1 133 1 126 134 77 30.0 7e-15 MALFSQPVFINLPTTDTERIREFWTTLGATAMDDYSDEHSVCIELTESTYAMYLSPGYYT DFIGNREIADCLTTNSALMALSVGDAAAVDALADRAVELGAAEVPLPVDLREEMADSGMH SREIVDPDGHQWEFVTA >gi|289557170|gb|ADCD01000066.1| GENE 12 12503 - 13456 842 317 aa, chain + ## HITS:1 COG:SA2106 KEGG:ns NR:ns ## COG: SA2106 COG1266 # Protein_GI_number: 15927893 # Func_class: R General function prediction only # Function: Predicted metal-dependent membrane protease # Organism: Staphylococcus aureus N315 # 173 287 126 238 245 68 33.0 2e-11 MSVPPSGPPAGPPAGWPPSGRPSDRRAAVAPSLDGHPGAPGGVPAGWPGRRPAARTASDW TPGRFHWGDAVVVLVYVALMVLGLGLWLAVSLGLVPGDLEAFDLVRDGFTVNIVSYAILV VLVLAVAWRPLVTSLRVFRTGTWWKLLLLPATWLACIVVNVIVLSLIGEAQTSANQAALE EMTTQAPPVLMILMTVVAAPLVEEYLFRHLLIGKLSRWINVWVCAVVSVLAFTLLHFLGT GGDFRLVETIPYLTLAVAITVSYILMGRSFGYAVLLHMVNNGIAIAMLYLVAPLLPDTLP EPTAPTTALAPLLALLG >gi|289557170|gb|ADCD01000066.1| GENE 13 13458 - 14870 1078 470 aa, chain + ## HITS:1 COG:Cgl1936 KEGG:ns NR:ns ## COG: Cgl1936 COG0534 # Protein_GI_number: 19553186 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Corynebacterium glutamicum # 21 417 16 408 435 160 33.0 5e-39 MAGPSGSTAAPAPQDARSLTRRILALAVPAFGALIAEPLFLLADTAIIGHLGTAQLAGVG IGTTILHTLTGLMIFLAYATTPAVARLIGAGNPAAAMDRGRDGIWLGLLLGAVLAVLGWL AAPALTAALGATGEVQAHAVAYLRWSMPGLPALLAVLAATGVLRGLQDTVTPLVVAGVGF GANIGLNVALVYGLGWGVAGSAVGTSVVQWAMLVTYLFVLAPRFRRSGTAWAPRASGMRA TAQVGSWLLLRTASLRAAILITVMAAAGAGDLTLAAHQLVFTLFSTLAFALDALAIAAQA LIGAELGAARPDAARRLTRTMVRWGLGFGVVTGAVLALAAPVLPGLFTTDPTVQAAATVG LWVLAVGQPVAGYVFVLDGVLIGAGDARYLALAGLVNLVVYAPALWVLAQLATGGLGWTA AWPGPNAAVPDAGVQLGLLWLGFAGVYMGMRALTLGWRARRDDWMRLGVV >gi|289557170|gb|ADCD01000066.1| GENE 14 14931 - 15512 426 193 aa, chain + ## HITS:1 COG:no KEGG:Mlut_21530 NR:ns ## KEGG: Mlut_21530 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 193 1 193 193 265 99.0 8e-70 MATVQTPLEISSVVFKPILIRAVVALAFGLTTVFVAEPGLTWMKVMFALYLAFSGSAMWE YLRRDPVPVAMRSPLSLAAAAWMLGVIVLLFLGSPAAVGVAAGAALVLGGVAELVAWARH RRAFIPARDQLWTGLVGLLSGGGVVVAALQGFGPHALLGIAGGGAILIGVLLMVSGLGFH HEVRRDRGTARGL >gi|289557170|gb|ADCD01000066.1| GENE 15 15703 - 16104 231 133 aa, chain + ## HITS:1 COG:no KEGG:Mlut_21520 NR:ns ## KEGG: Mlut_21520 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 133 1 133 133 185 99.0 4e-46 MSAPSPRPSADRAGSGRPARGGLRTTVKGPLVFSAVLGLIGGVIAGITASGGTQNPLRID IALIAFGVFFMTSLVVVAMLQLAARENPDHLSQGSGVNRSSEEMFRKAAADRRAQAARER REQGGTGGDAPRA >gi|289557170|gb|ADCD01000066.1| GENE 16 16115 - 17098 802 327 aa, chain - ## HITS:1 COG:CAC0267 KEGG:ns NR:ns ## COG: CAC0267 COG0039 # Protein_GI_number: 15893559 # Func_class: C Energy production and conversion # Function: Malate/lactate dehydrogenases # Organism: Clostridium acetobutylicum # 18 325 6 312 313 250 40.0 3e-66 MSEHTPAAPASLEPAHRKVGVVGAGGVGTAICYAALIRGVAREVALYDIDEPKVRAEVLD LAHGTPFTSASAMTGGADPDVLAGCEVVVITAGAKQKPGQTRLDLGAHNVEILRGLLPQV QAHAPEALIVLVTNPVDVLTLVAQRLTGLPAARVIGSGTLLDTSRLRWLLASRAHVHASS VHAAILGEHGDTEFPAWSSARIGPTPLLEWPTPADPLFTRADLDAVADTVVHAAYEVIQG KGATTYAVGVATTRLLEAILRDQHAILPVSTVLDGVHGLSDVALSMPSVVGRDGVTRVIQ PELDDAEMRALHASADALRREARSLGF >gi|289557170|gb|ADCD01000066.1| GENE 17 17194 - 17958 694 254 aa, chain - ## HITS:1 COG:no KEGG:Mlut_21490 NR:ns ## KEGG: Mlut_21490 # Name: not_defined # Def: conserved protein containing a Zn-ribbon-like motif, possibly RNA-binding # Organism: M.luteus # Pathway: not_defined # 1 222 1 226 262 245 94.0 1e-63 MLSAPTLSRLASLAAFLNTAPGLRGGQPADERFTAATQLPSLVPELQEDEVRLRLAAAAA VRGRELRGRLAEVWALAAGDEAAAVERVNALLATAGPLRLTAGGDVVGLAPAQVPADAVE RLAAMATLALAETAMDGELARLRVCEGEDCENALVDASRNRSKRFCDEANCANRTHVRSY RARLAEAAEAAPTTDPAGPEEAEAPEAVVGSEAPADEPRQETEKEKKERRKAEKKARKKA EKKAGKKKSDKKKD >gi|289557170|gb|ADCD01000066.1| GENE 18 18126 - 19781 1545 551 aa, chain + ## HITS:1 COG:BMEII0351 KEGG:ns NR:ns ## COG: BMEII0351 COG0028 # Protein_GI_number: 17988696 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] # Organism: Brucella melitensis # 12 545 12 542 564 387 41.0 1e-107 MSQTSQATGRLSAGHVIVKTLESHGVKRVYSVPGESYLDVLDGLHDSGIENVVCRHEGGA TYMAEADGKMNEVPGVAMVTRGPGAANAHVGLHTAWQDSTALVLFVGLIPFEHRDREAFQ EFDPHAWFGTGAKRVMVLDHPERASEIVAEAMFAASSGRPGPVVVGLPEDVIRQEIDAHL HPQIPVAPGGMTVEDWKSLHAALKESRKPLFITGGNDWTDEGAQALTTWLEEHKIPAAAE WRTEGTVPFSSPSYVGPIGYGRPKPTYDMLEETDLIVFVGTVPGDVVTNGFTIRQNWDKK NFLVTIDPSLRGRSGPVSHQIVAKPDVFIRDLVRMELEVKPEWEEWTSRMRGEQEKFAAL PPAEPSEGQAKMATLMANLVPKLPKDSMISLGAGEHTNWAHRYFPTEGYRAMISARNGSM GYSVPGSVAASLNFPDRTVVTIAGDGEFLMNGQELATAAQYGATPLVIVMDNQEYGTIRT HQERQYPERVSGTQLKNPDFAAMAEAFGGFGVRVERDADVPAAVDAALKAVQEEGRFALI HLIVEQRVKAY >gi|289557170|gb|ADCD01000066.1| GENE 19 19819 - 20382 472 187 aa, chain - ## HITS:1 COG:CAC2487 KEGG:ns NR:ns ## COG: CAC2487 COG3981 # Protein_GI_number: 15895752 # Func_class: R General function prediction only # Function: Predicted acetyltransferase # Organism: Clostridium acetobutylicum # 70 170 60 158 169 84 42.0 1e-16 MLPDPSPTVTVDGLLLRPLRAADEIAAREADAELHREGFDFLLGGATRSFPAIRRAFAAE ARGDVEPGRVPASFYVGVDENGELVGRVSVRWELNEALRHVNGHVGYAVRPAFRRRGHAV RLLRGALTLLAARGVSTALLTCDETNTASVATIRACGGVLRDRVEADLDGAPFPEPKLRF DVPTTAA >gi|289557170|gb|ADCD01000066.1| GENE 20 20678 - 21115 367 145 aa, chain + ## HITS:1 COG:BH0680 KEGG:ns NR:ns ## COG: BH0680 COG3564 # Protein_GI_number: 15613243 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 27 144 4 111 118 141 58.0 3e-34 MTVPSSSAGHAPALEARPELPGETVSRVAMTPAALELIRRLLPIHGPLMFHQSGGCCDGS APICYPAGDFTTGAADVLLGTFALPAEGDQAAVEIPFWMSAAQFEYWKHTHLTLDVVDGR GSGFSVEAPEGKRFLIRSRLMAGSG >gi|289557170|gb|ADCD01000066.1| GENE 21 21112 - 22581 955 489 aa, chain + ## HITS:1 COG:BH1826 KEGG:ns NR:ns ## COG: BH1826 COG3284 # Protein_GI_number: 15614389 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; K Transcription # Function: Transcriptional activator of acetoin/glycerol metabolism # Organism: Bacillus halodurans # 125 222 85 181 623 69 34.0 2e-11 MSSTLATGAYRRAVDRAHESLASVRLSLVPSSPTSPVGADQGLRAALQGLRREVRESWLR SLGALTPAGSALDAGASATAPAVPGQTDPATLADDDLAAARREQRLAVALPVVRRMLIHP AAEAGMLAAIGNARGHLLWVEGDRTAVRHAETMGFVAGADWSEASMGTSAPGIVLATGAP TQVSRGEHLSPRVHPWSCSAVPLTDPATGRLVGVLDLTGGEDAVSHLALPLLQATVDAVH AAWRDLPAPSRGRPRGTVPTPGPSAPPSASPEPSPAAAPHRHDAAAGLLRVTGHLPPTLD GVELTGRHAEILTLLAWHDPGLTGAELEVALYPEETAGHRPAPGDAPARAISLRAEVHRL RRALQDVGAPVALLSRPYRLVGEVHADLLCAREALRAGDLDRALHAAAGPVLPRSVSPGV ASIRAELGEALREAVAQDADVEQLWAYLGRPEARDDVELWGAALRLLPTDSPRRALAVAT LERIERDLA >gi|289557170|gb|ADCD01000066.1| GENE 22 22704 - 24227 1476 507 aa, chain + ## HITS:1 COG:BH0681 KEGG:ns NR:ns ## COG: BH0681 COG1012 # Protein_GI_number: 15613244 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Bacillus halodurans # 3 507 2 506 506 798 76.0 0 MTVYAFPGTEGAKVEFKSRYEHFIGGEWTPPVKGQYFENVTPVTGKVFCEVARGTAEDID AALDAAWKAAPAWGATSAAERALVLHRIADRMEENLEMLAVAETWDNGKAVRETLNADLP LAIDHFRYFAGAIRAQEGGLSQVDEDTVAYHFHEPLGVVGQIIPWNFPLLMGVWKLAPAL AAGNAVVIKPAEQTPASIMVFIELIADLLPAGVVNVVNGFGLEAGKPLAQSPRIRKIAFT GETTTGRLIMQYASENIIPVTLELGGKSPNVFFEDVMANDDAYWDKAQEGFTLFALNQGE VCTCPSRALVQESIAEKFLDAVVERTSRIVTGNPLDTDVMMGAQASNDQLEKITSYLDIG RQEGAEVLIGGARAEMEGELAGGYYVQPTIFRGDNSMRIFQEEIFGPVVSTTTFTDFDDA MRIANDTLYGLGAGVWSRNGNIAYRAGRAIQAGRVWVNNYHAYPAHAAFGGYKSSGIGRE NHLMMLDHYQQTKNLLVSYSEDKLGFF >gi|289557170|gb|ADCD01000066.1| GENE 23 24280 - 25311 951 343 aa, chain + ## HITS:1 COG:Cgl2747 KEGG:ns NR:ns ## COG: Cgl2747 COG1064 # Protein_GI_number: 19553997 # Func_class: R General function prediction only # Function: Zn-dependent alcohol dehydrogenases # Organism: Corynebacterium glutamicum # 6 339 11 345 345 459 66.0 1e-129 MTTMKAAVVTQFGTEADVQEVERPTPGQHQALVKLISSGVCHTDLHAMEGDWPVKPTPPF IPGHEGVGIVEEVGPDVENLKVGDMVGNAWLWGACGHCQYCRTGWETLCEEQINGGYSMN GSFGEYMLVDARYAPVIPEGADPMEVGPVLCAGVTVYKGLKQTEVRPGQWVVISGIGGLG HIAVQYAVAMGMRVVAVDVADDKLALASRHGAELTVNANVADPSVEIQEKIGGAHGVLVT AVHPQAFGQAIAMTRRGGTIVFNGLPPGDFPAPIFDIVLKGLTIRGSIVGTRQDMVEALE FYAAGKIHPTFHTRPLTEINDVFDEMRHGKIEGRVVIDYAMQD >gi|289557170|gb|ADCD01000066.1| GENE 24 25466 - 26371 557 301 aa, chain - ## HITS:1 COG:RSp0795 KEGG:ns NR:ns ## COG: RSp0795 COG4757 # Protein_GI_number: 17549016 # Func_class: R General function prediction only # Function: Predicted alpha/beta hydrolase # Organism: Ralstonia solanacearum # 3 291 2 280 290 112 33.0 1e-24 MTQTTSTPVRLRARDGFELAAHHFVPTTTTPPARPAGAVVIASATGVKTTYYRRYAEFLA GHGFHAVTFDYRGVGESREPFAVARRARWADWGALDADAVLGWARTHLPGPLLTVGHSYG GFGIGLADEARHVARHVAVGGQHAYWRDYRARPGRARMWARWHAVMPAITLARGHFPGRR LGWLEDLPRGVALDWARSRRDFTASARTAAGRDELRRRLAAFTADALIVAPVDDDFGTDA ALDRVDAYSPGRRTVRWRVRPEELGVAEIGHFGLFHARFAPTFWPATLEWLRDGVAPDAA R >gi|289557170|gb|ADCD01000066.1| GENE 25 25943 - 26860 432 305 aa, chain + ## HITS:1 COG:paaI KEGG:ns NR:ns ## COG: paaI COG2050 # Protein_GI_number: 16129357 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Uncharacterized protein, possibly involved in aromatic compounds catabolism # Organism: Escherichia coli K12 # 182 298 12 129 140 65 35.0 9e-11 MLPAHGHVPGHVTRLVREPDAEPAVAVAHRQEGAGQVRPGPAEHGVRVEGAPVRPPRPPG HGERLAGLPDTPVVERDRVEPVAGEELGVAPVVRGLHPGRRGDHHRAGGPGRGRRRRGDE VVGRELEAVAGAEAHGGGGGLRHAATLGAGRRDLRHNGPMTETPQSSSGQRRDEVLARLE EIYANDPAVREHGVTLGEVAEGHVVLHRDVTADMVNSHEICHGGFLFHLADSALAYCVAT FGAAPVTRRAEITYVAPARLGTHLVATARQSVEFGRDRMIEVGIEADGQLVAWFTGHSTS PRVHA >gi|289557170|gb|ADCD01000066.1| GENE 26 26905 - 27174 157 89 aa, chain + ## HITS:1 COG:BS_yczJ KEGG:ns NR:ns ## COG: BS_yczJ COG2329 # Protein_GI_number: 16077480 # Func_class: R General function prediction only # Function: Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides # Organism: Bacillus subtilis # 3 89 8 95 95 63 38.0 7e-11 MELHVAAGAEAAFEAAVAEAEPLFRDGGATSFALSRQVEDPARYRLLIGWRTLEDHTVAF RGSDSFLAWRALVTPHLTQLPAATHWSAV >gi|289557170|gb|ADCD01000066.1| GENE 27 27320 - 28420 463 366 aa, chain - ## HITS:1 COG:no KEGG:Mlut_21390 NR:ns ## KEGG: Mlut_21390 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 182 366 1 184 184 329 97.0 1e-88 PGPAGRSGQAFAGVLEPLLEFAGLLPELVELGAGGLADDHADQLAQGLDVLVRELVDEGG EVDLVRLRVLEQGLEVRVVLVPGDPHERPEGEECGALARGQVALVLVATEVPAELVEVEG AVEDLVHDVQRRVVLEDVSAPCAHDLTLGPGRAPGKSAVVSRRGVPSPPLPVSAAVPRLG GMSTEPTPSSATPETEPAAAPSSSRLPQAAPQAAWPERVETGEHQVSYRVTVAAPAHELW AMLADPHRHHEADGSGTVRPKVSGPHRLAVGDRFRVAMRKYGVPYTMPLTATAVDEDELV EWAHPGGHRWRWAFQDNGDGTTEVTETFDYSWARPAVRRAYELLRVPADNGRGIQSSLTR LAGRHL Prediction of potential genes in microbial genomes Time: Thu May 26 07:46:01 2011 Seq name: gi|289557140|gb|ADCD01000067.1| Micrococcus luteus SK58 ctg1119142780312, whole genome shotgun sequence Length of sequence - 24152 bp Number of predicted genes - 30, with homology - 29 Number of transcription units - 14, operones - 8 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 3 - 1394 748 ## gi|289706108|ref|ZP_06502479.1| hypothetical protein HMPREF0569_1143 2 1 Op 2 . + CDS 1462 - 1767 212 ## gi|289705819|ref|ZP_06502201.1| hypothetical protein HMPREF0569_0504 3 1 Op 3 . + CDS 1764 - 2303 323 ## gi|289706110|ref|ZP_06502481.1| hypothetical protein HMPREF0569_1145 4 1 Op 4 . + CDS 2296 - 3402 727 ## gi|289705821|ref|ZP_06502203.1| conserved hypothetical protein 5 1 Op 5 . + CDS 3460 - 4392 522 ## gi|289706112|ref|ZP_06502483.1| hypothetical protein HMPREF0569_1148 6 2 Tu 1 . - CDS 4379 - 4885 284 ## gi|289706113|ref|ZP_06502484.1| GDSL-like lipase/acylhydrolase 7 3 Op 1 . + CDS 5236 - 5520 214 ## gi|289705824|ref|ZP_06502206.1| hypothetical protein HMPREF0569_0509 8 3 Op 2 . + CDS 5571 - 5990 269 ## gi|289706115|ref|ZP_06502486.1| hypothetical protein HMPREF0569_1150 9 3 Op 3 . + CDS 6056 - 6286 217 ## gi|289706116|ref|ZP_06502487.1| hypothetical protein HMPREF0569_1151 10 4 Op 1 . + CDS 6389 - 7441 853 ## COG0739 Membrane proteins related to metalloendopeptidases 11 4 Op 2 . + CDS 7453 - 7659 236 ## AB57_2699 hypothetical protein 12 4 Op 3 . + CDS 7662 - 7988 220 ## gi|289706119|ref|ZP_06502490.1| hypothetical protein HMPREF0569_1154 13 4 Op 4 . + CDS 8024 - 8311 64 ## + Term 8385 - 8431 18.2 14 5 Op 1 21/0.000 - CDS 8429 - 9748 910 ## COG0477 Permeases of the major facilitator superfamily 15 5 Op 2 . - CDS 9544 - 9921 185 ## COG0477 Permeases of the major facilitator superfamily 16 6 Op 1 . + CDS 10019 - 10324 256 ## COG2329 Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides 17 6 Op 2 . + CDS 10419 - 11051 629 ## COG0242 N-formylmethionyl-tRNA deformylase + Term 11128 - 11182 1.6 18 7 Tu 1 . - CDS 11134 - 12627 1479 ## COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase - Term 13067 - 13093 1.0 19 8 Tu 1 . - CDS 13124 - 13438 305 ## Mlut_09510 hypothetical protein 20 9 Tu 1 . + CDS 13537 - 14334 453 ## COG3022 Uncharacterized protein conserved in bacteria 21 10 Op 1 . - CDS 14369 - 15358 672 ## COG0328 Ribonuclease HI 22 10 Op 2 . - CDS 15440 - 16174 626 ## Mlut_09480 Zn-ribbon protein, possibly nucleic acid-binding 23 10 Op 3 . - CDS 16171 - 17106 633 ## COG0327 Uncharacterized conserved protein 24 11 Op 1 . + CDS 17178 - 17792 531 ## COG0225 Peptide methionine sulfoxide reductase 25 11 Op 2 6/0.000 + CDS 17878 - 18813 729 ## PROTEIN SUPPORTED gi|148988856|ref|ZP_01820271.1| 50S ribosomal protein L9 26 11 Op 3 . + CDS 18857 - 19444 418 ## COG1045 Serine acetyltransferase + Term 19592 - 19638 0.3 27 12 Tu 1 . - CDS 19491 - 20660 877 ## COG2866 Predicted carboxypeptidase 28 13 Op 1 . - CDS 20799 - 22361 1431 ## COG0362 6-phosphogluconate dehydrogenase 29 13 Op 2 . - CDS 22441 - 23355 1020 ## COG2326 Uncharacterized conserved protein 30 14 Tu 1 . + CDS 22504 - 24151 405 ## PANA_1234 hypothetical protein Predicted protein(s) >gi|289557140|gb|ADCD01000067.1| GENE 1 3 - 1394 748 463 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289706108|ref|ZP_06502479.1| ## NR: gi|289706108|ref|ZP_06502479.1| hypothetical protein HMPREF0569_1143 [Micrococcus luteus SK58] # 1 463 1 463 463 909 100.0 0 AAAGVPLVLSAGTTIGISSYQKLPAGLVMHTNGATFKQLTPMGRAPVISLGPRSRVVGGI YVSLLGGAACQGVAITDAPDVEVDRVDVRSQVPAAGSGNVRDNGVRVLNSDRASIGRTYV ENFDWPVWAEKSKGVSLGWVEANTYAKGLHLDDVTRLRVGGGHVYGASPNSKFAPGYNGV LMEGDEGTDDVRITGFTVEDAGEHGYRVSGPAAHTNIWLDACMARNSGGTGFKVLGSLVS DGVYNKGITFNACRAIDSGQVNRNTCGFLIQMADGVTLISPVVEKDKKTFSAVEGIRMSG VRHVTISNPKIMDTHKFALHIDEACGNVQDISISKMHIQTGSGHGIYLQNPGVEFRELQI EAFVEVYAGEGAAFYAGRHTSEDTGTWRGINKLDITFSDSTGAERQISTYSSENALASFT ANIVGRDDTTSPGSWPPFRPGSTRYNLRLGAFQVKRADAWNSL >gi|289557140|gb|ADCD01000067.1| GENE 2 1462 - 1767 212 101 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289705819|ref|ZP_06502201.1| ## NR: gi|289705819|ref|ZP_06502201.1| hypothetical protein HMPREF0569_0504 [Micrococcus luteus SK58] # 1 101 1 101 101 174 100.0 1e-42 MADDPKRYAEVPGGHLYLKAGQVPDQPYTETIAKNRASKDRELLDSMQATEAAALGAVAD LEAKWTTSHLERSTSGRLVFAQGTGTVPVTRTSTGRLVVRA >gi|289557140|gb|ADCD01000067.1| GENE 3 1764 - 2303 323 179 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289706110|ref|ZP_06502481.1| ## NR: gi|289706110|ref|ZP_06502481.1| hypothetical protein HMPREF0569_1145 [Micrococcus luteus SK58] # 1 179 1 179 179 266 100.0 4e-70 MTRILIDWGGRGTVVVARTHLEVDGARIHLPDGRLEHIDGPTVIDLDPTDPGDAWRIRHY PEHRTPFTWWVLIPEADDDAPPIPVTRLARIDPATLSPTTGPNPAAWTAALNTERAARAA AVADLRDALADLPAPSASVSHIAVTDGGRLAHRAGGSTTLTTTTSGRLAVVRAPGGTHG >gi|289557140|gb|ADCD01000067.1| GENE 4 2296 - 3402 727 368 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289705821|ref|ZP_06502203.1| ## NR: gi|289705821|ref|ZP_06502203.1| conserved hypothetical protein [Micrococcus luteus SK58] # 1 368 1 368 368 621 100.0 1e-176 MAENPEDLIVTDAELRRQLPALAKELKIGGVAGSVPIFPTLAEAQAWEAANPGKKALTLE PSTPDTTAPIAGTLTVSVKDKTATGTVSGATDDRAVTGYAFRVGSGAWSAWQSSPTYEFT GLSASTPYWFQHQVRDAAGNVAVGTAVQATTLAVMPVTDDYAYQWLGSQAGGSTWTDTKA GLALPLVGAAPIVEGPWVQFPRPGSAATSMYGPFTLSSLTTSTPTMVVVMRARVDYANRM GVAVGTFGSGGSLGIMNRDGAAKIPGLLVNGAQKNLGQAAYADGVVGVAVARFASGSNSL AWNGGTPVVDGATFDAAAMKSTNMHLAYVGGNTAFAGDLAEVRIYNRRLTDAEATQVATE LKQKYGIA >gi|289557140|gb|ADCD01000067.1| GENE 5 3460 - 4392 522 310 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289706112|ref|ZP_06502483.1| ## NR: gi|289706112|ref|ZP_06502483.1| hypothetical protein HMPREF0569_1148 [Micrococcus luteus SK58] # 1 310 1 310 310 561 100.0 1e-158 METVTGLVNANGVKFSRVHLKFGAENAYFYIPEVVRDGKKITYVQWSHGFTGTYKDLESD YARATKFLSLAMDRGWVVSVGDDTGSSHWSTPPAIKAHRSHYAYAAERWNVQDVLLAGGS MGGLTTLNLLGNDVIPKVRATAVIVSVVDIPAMTTTGYADYVYPAWGVSNVPDLTAAIQG LDPARDDPQKWANKRIWINAGTADTLVPKVQHGDVFVGRAATPSFIHYDFGSHGHGGPES DVPWVEWLSTYAPNYDATQNAPTDPGPPPPSTGGGTAPPATPAGSGIYRADGREASLYRS DGTLVRLSRS >gi|289557140|gb|ADCD01000067.1| GENE 6 4379 - 4885 284 168 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|289706113|ref|ZP_06502484.1| ## NR: gi|289706113|ref|ZP_06502484.1| GDSL-like lipase/acylhydrolase [Micrococcus luteus SK58] # 1 168 47 214 214 268 100.0 6e-71 MAQEFMTGLPGAEVALVGDSHIAGGAWSEVLGMPVAARGQSGARIAELDGAVDALPHDAR GVVVWAGTNDVIAGHDVAQVEADMEAMLAKVEAVAPAASVIVLSVPPLNGWDEGPANDAL RRAADDAGAVYMETAPALDAHMASDGVHVRGPGYTALADRLRGALTTG >gi|289557140|gb|ADCD01000067.1| GENE 7 5236 - 5520 214 94 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289705824|ref|ZP_06502206.1| ## NR: gi|289705824|ref|ZP_06502206.1| hypothetical protein HMPREF0569_0509 [Micrococcus luteus SK58] # 1 94 51 144 144 149 100.0 4e-35 MWEFASPIAWALAAVFAGTLSALVVLRWRELAPAPLILQTAIWGAISALITWGAIGGGVP SAAIIYALPGWLCLLLVVLYISEARGHQAREDHR >gi|289557140|gb|ADCD01000067.1| GENE 8 5571 - 5990 269 139 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289706115|ref|ZP_06502486.1| ## NR: gi|289706115|ref|ZP_06502486.1| hypothetical protein HMPREF0569_1150 [Micrococcus luteus SK58] # 1 139 19 157 157 208 100.0 1e-52 MYVGMIVLGVAHATGVISSRAVQEVLASPWEEIWAGLHLIGPIMAAAGALAAAHRKLPIY SMSAELVGCAIFALTKGTYVGCLFTVYGLSGGPSTQIMGAGIAIGCAARATQVGLELSRL VAAAHATTSPEPATAPTGR >gi|289557140|gb|ADCD01000067.1| GENE 9 6056 - 6286 217 76 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289706116|ref|ZP_06502487.1| ## NR: gi|289706116|ref|ZP_06502487.1| hypothetical protein HMPREF0569_1151 [Micrococcus luteus SK58] # 1 76 21 96 96 137 100.0 3e-31 MYGIGWVVRHRIETATAPGAEPPTTQTPALPRDLYDDCREDLEQLRGELTTERARRIHLE GILARHGITPTTPTED >gi|289557140|gb|ADCD01000067.1| GENE 10 6389 - 7441 853 350 aa, chain + ## HITS:1 COG:TP0444 KEGG:ns NR:ns ## COG: TP0444 COG0739 # Protein_GI_number: 15639435 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane proteins related to metalloendopeptidases # Organism: Treponema pallidum # 256 349 63 155 342 63 42.0 5e-10 MLEEAGIDYELTPGWDDQTLALWGKPMDGVLATVIHTTETADSAFARGADAPTKAWIKRG LGYPTYNLMHGRSGKVIVNTAGVGAQAGTGSWPTHVCPNPGVERDLANFTTLGISMDANE SKYPVTEAQIRALIRLLVAIDKEWGATLPTIMHAEWAWERTTNKRTDPTRVPGGHDAIRK AKARGAWDTAPTPTVVRPDPPTAAPDGTYVVQPGDGWWAIARAHGIAAVDLAKMNGATTG TLIHPGQTLRTPKVEAGTVHRVVAGDTMSRIARTAKVPLDALLAANPKVHPDRIEIGQVI ALPISTYTVRPGDSWWAIASRHGTTHGALAALNGKTTADTIHPGDVLRVA >gi|289557140|gb|ADCD01000067.1| GENE 11 7453 - 7659 236 68 aa, chain + ## HITS:1 COG:no KEGG:AB57_2699 NR:ns ## KEGG: AB57_2699 # Name: not_defined # Def: hypothetical protein # Organism: A.baumannii_AB0057 # Pathway: not_defined # 6 63 5 61 63 67 63.0 2e-10 MNKNAILRYFTYDHLTRSPLRDVSEPFHDLADTLDAQLPDGPEKSTALRKLLESKDAAVR SALDIEGA >gi|289557140|gb|ADCD01000067.1| GENE 12 7662 - 7988 220 108 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289706119|ref|ZP_06502490.1| ## NR: gi|289706119|ref|ZP_06502490.1| hypothetical protein HMPREF0569_1154 [Micrococcus luteus SK58] # 1 108 1 108 108 170 100.0 2e-41 MQTRRTPIIDTLTLWTGSVQAALAAGAGAAILTDLPDWVAFSLAVGLFVVGMVQAGLRWA AQNATVPADDVVEVREGADVVAGPANDQVAEGAFVRELGRSPRHRVAD >gi|289557140|gb|ADCD01000067.1| GENE 13 8024 - 8311 64 95 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLGRGRSSASTGISRGRAAPATLGLGAARHPLRAAGACRGQSRDRRGSRPATSPGGGAAS SPAPRAGTPVTSPECNPGSLRPPNTTCSNRFNRGA >gi|289557140|gb|ADCD01000067.1| GENE 14 8429 - 9748 910 439 aa, chain - ## HITS:1 COG:AF2258 KEGG:ns NR:ns ## COG: AF2258 COG0477 # Protein_GI_number: 11499839 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Archaeoglobus fulgidus # 63 374 140 427 503 110 29.0 7e-24 MGSQSALPRRARGVRRWQPARGGRLQRRHADRGTGRPGRGRGVHHALHALHRERRVPLAA AFGVWGAVISGAAAIGPLAGGALTQWTSWHWIFLVNLPLGAIVFVAALLTVPETRGEKRR PGVDVDGALLSAIAFGALVFAVIEGPDLGWWTPKEELTVFGWGWSTDAPISIVPLALAVA VVALGLFVAWERHRETVRRSALLDLGLFSFSTFSWGNVTAAMVAVGEFAIIFVLPLYLIN ALGLDVMGAGLVLAAMAAGAFLSGAAARHLAARFGAPGTVLIGLGLEVAGVVVHALLLGP DTSGWLVAVPLVVYGLGLGLASAQLTGTVLQDIPVEISGQGFATQSTVRQIGSALDTAVA GATLSIALAATLPAALDGAGLTGPAVDSLASATRDSAGTTIPQLRAQGELGPLAEHTGAV VDALTAGFADAARRASGRR >gi|289557140|gb|ADCD01000067.1| GENE 15 9544 - 9921 185 125 aa, chain - ## HITS:1 COG:Cgl1213 KEGG:ns NR:ns ## COG: Cgl1213 COG0477 # Protein_GI_number: 19552463 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Corynebacterium glutamicum # 22 121 60 159 487 68 39.0 2e-12 MPGGVVPAKLSDGIGRRAAPLAIIADLHLDLTDAQWVNSLYAVLLAALLLSTGNLADRWG RNRLFLAGLVVFVGGSLLAAAASSGGMLIGARAVQAVGAAFIMPSTLSTVNAVFRWRRRS ACGVP >gi|289557140|gb|ADCD01000067.1| GENE 16 10019 - 10324 256 101 aa, chain + ## HITS:1 COG:Cgl2935 KEGG:ns NR:ns ## COG: Cgl2935 COG2329 # Protein_GI_number: 19554185 # Func_class: R General function prediction only # Function: Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides # Organism: Corynebacterium glutamicum # 1 98 1 100 107 121 67.0 3e-28 MSVVKINAISVPEGAGPELEKRFAARKHAVDQEPGFEGFQLLRPTAGEDRYFVVTTWASE QDFQRWRDGRMPAAHAAEQGGRPAPVATGADLLEFEVVDLG >gi|289557140|gb|ADCD01000067.1| GENE 17 10419 - 11051 629 210 aa, chain + ## HITS:1 COG:Cgl2682 KEGG:ns NR:ns ## COG: Cgl2682 COG0242 # Protein_GI_number: 19553932 # Func_class: J Translation, ribosomal structure and biogenesis # Function: N-formylmethionyl-tRNA deformylase # Organism: Corynebacterium glutamicum # 3 194 2 193 193 166 48.0 3e-41 MASIRPITVYGEPVLHRRAAEVEVIDDEIRELIEDMYVTQDAAHGVGLAAPQVGVGLRIF TWTFPDSGDAPNVGHVINPVLTHLDKAPREDPHPDEHTEGCLSVPGLGFPLQRPTRVRLS GQRVDGEMFEFEAEGWFARIMQHEYDHLNGTLYVNRLEGKWQRRWKRAQRAERLNVPGVT WLPGTDEDPFGHDADDHADHEHGPDGDDEA >gi|289557140|gb|ADCD01000067.1| GENE 18 11134 - 12627 1479 497 aa, chain - ## HITS:1 COG:Cgl0913 KEGG:ns NR:ns ## COG: Cgl0913 COG0057 # Protein_GI_number: 19552163 # Func_class: G Carbohydrate transport and metabolism # Function: Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase # Organism: Corynebacterium glutamicum # 27 496 7 473 480 578 62.0 1e-164 MGPAQDGPARFQGRTPVADTASTQTPEWNTQQKLAEKMVPLLGTLYREHNVVTSIYGRSL VNRGVIDIIKAHRYARRVQEAPLSVESTYPLVEAMAAMDLGAATVDLAELAAKQKASGQD VQAFLDAELAEVKGKAGEGLGETQDVVLYGFGRIGRLLARILLDHAGGGSKLRLRAVVVR KNSEDDLIKRASLLRRDSIHGPFDGTIVVDEDRDVITANGTEIQVIYSNDPTTVDYASYG IKDALVVDNTGRWRDDEGLSQHLQAKGAAKVLLTAPGKGEMKNIVFGVNSDDITPQDTIV SAASCTTNGITPVLKVIQDDYGIDHGHVETVHAYTNDQNLVDNFHKGARRGRAAGMNMVL TETGAAKAVAKALPELKGKLSGNAIRVPTPDVSMAILNLELTKPTSVEELNARLKQESLT GPLRGQVGYVDSPEVVSTDFVGSDRAGVVDGLATLVNNDGKNAILYVWYDNEYGYSHQVI RVVEKMAGQQVPAFPQA >gi|289557140|gb|ADCD01000067.1| GENE 19 13124 - 13438 305 104 aa, chain - ## HITS:1 COG:no KEGG:Mlut_09510 NR:ns ## KEGG: Mlut_09510 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 104 1 104 104 187 98.0 1e-46 MTAMNVFGVVYPFVLLVIAAAVWLGIRSSGRERTHASAVEQRLRERTFTGQDRVTLEWPR DRRRPSLAKVVSIGESYGYRLLDKREREHVVELEFERILDDEGF >gi|289557140|gb|ADCD01000067.1| GENE 20 13537 - 14334 453 265 aa, chain + ## HITS:1 COG:Cgl1949 KEGG:ns NR:ns ## COG: Cgl1949 COG3022 # Protein_GI_number: 19553199 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Corynebacterium glutamicum # 1 238 1 228 245 114 37.0 3e-25 MLILLPPSEGKTAPRSGAPLDLDALALADDAAVTDARADLLTRLAAVSAAPDALTALGVG ASLAGEVEANTRLASAPAAPGHRVFTGVLFDALDHAALSSAAKRRARTSVLVFSALFGAT ALADRIPAFRLPVGAKLPGLPGLAAHWRPVMTPALDALAARDGGPVVDCRSGGYAAQWRA PVERTLAVDVFQLRDGERTVVSHFAKHTRGLVARALLEAGARETSTLDRVADVVARAGDG PGWEVELARPSGAKPGALRVILPEG >gi|289557140|gb|ADCD01000067.1| GENE 21 14369 - 15358 672 329 aa, chain - ## HITS:1 COG:Cgl2186_1 KEGG:ns NR:ns ## COG: Cgl2186_1 COG0328 # Protein_GI_number: 19553436 # Func_class: L Replication, recombination and repair # Function: Ribonuclease HI # Organism: Corynebacterium glutamicum # 6 140 3 138 179 134 59.0 3e-31 MSGRVLQVEADGGSRGNPGVAGYGALVRDPATGEILRTDAAPLGKASNNVAEYSGLVAGL RMARDLDPEARVHVLMDSKLVVEQMSGRWKIKHEDMRRLAAEARSVLPPERVTYEWIPRN RNKDADRLSNEAMDAGARGEQWDAGASEVPVAAPAEASATSASAVAESSLDADADVRAVE ADGPDAVASPEDATPAPAPTGRLHHVEIWVADLAAAETSLGWLFGELGYVPGQGWAEGRT YQGAGEYLVLEAGPDVAGGAHERTRPGLNHLAFRAGSRSRVDELTAAARGRGFRLLFEDR HPHAGGADHYAAYLETADGFEVELVAVED >gi|289557140|gb|ADCD01000067.1| GENE 22 15440 - 16174 626 244 aa, chain - ## HITS:1 COG:no KEGG:Mlut_09480 NR:ns ## KEGG: Mlut_09480 # Name: not_defined # Def: Zn-ribbon protein, possibly nucleic acid-binding # Organism: M.luteus # Pathway: not_defined # 1 244 1 244 244 233 98.0 3e-60 MSEVTAPPAVQARLLELQELDTALDQARAAVRQLKADPEHARLRARAQEFEEALPGLQDA ARTADRAGAEATEKAAATRARRDRTRERLETGQGGPKELQAMQHEDDTLTALLDDHEAAA LEAMEAADAAESRLSRGHAALERARAEVEARAAEVRREGQAVTQRGRDLIQRRAALAAEF PASLLALYEQARERNGGIGAARLVGNRSAAAGTELSPAEVARIRALPPAAVARCPESGAI LIRD >gi|289557140|gb|ADCD01000067.1| GENE 23 16171 - 17106 633 311 aa, chain - ## HITS:1 COG:CAC1303 KEGG:ns NR:ns ## COG: CAC1303 COG0327 # Protein_GI_number: 15894585 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Clostridium acetobutylicum # 30 298 11 267 268 115 28.0 2e-25 MAGMTVSRSAVPASPEHALHPPTLGHVLEVVQGLWPRELAEPWDAVGPVAGRPEAPVRTV LWALDPVQAVADEAVARGADLVVTHHPLLLRGTSSVAAVGHAAAKGRLLHTLIEHRIALL AAHTNADAVVGGVSDVLARAVGVTGALSPLTTSAAGTGAEGIGRVGDLPEETDLAAFARA VHAALPATAGGVRVAGDPAQRIRRVAVCGGAGDSLFDAVRASGADVYVTADLRHHPASEA RETAVSGDGRPALVDVSHWASESLWLEHGARALEAALAERGLGVTTLFSDHRSDPWDFLV GGERADEGSHA >gi|289557140|gb|ADCD01000067.1| GENE 24 17178 - 17792 531 204 aa, chain + ## HITS:1 COG:SSO1503 KEGG:ns NR:ns ## COG: SSO1503 COG0225 # Protein_GI_number: 15898331 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptide methionine sulfoxide reductase # Organism: Sulfolobus solfataricus # 34 192 5 163 177 187 49.0 1e-47 MKSAGRVAVPAMTDSPRTEPLGASGAPADIRELTLAGGCFWCLDAVYRRVRGVLAVESGY TGGDDPAPSYESVCTGTTGHAEAVRVRFDAAVVPPEVIMDLFFTGHDPTSLNRQGADVGT QYRSAVFAHDEAEARFFADEIARAQANYDSPIVTRVEPASAWHPAEDIHQDFYARRRSNG YCRVVIDPKLAKVRRNYSAWLVDA >gi|289557140|gb|ADCD01000067.1| GENE 25 17878 - 18813 729 311 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148988856|ref|ZP_01820271.1| 50S ribosomal protein L9 [Streptococcus pneumoniae SP6-BS73] # 4 307 3 305 308 285 48 2e-76 MARILDDITQAVGNTPLVRLNRLAKDLPGDVAVKVEFYNPANSVKDRIGTAIVDAAEAAG ELTPGGTIVEGTSGNTGIALAMVGAARGYRVILTMPETMSTERRVMLKAFGAEIVLTPGA DGMRGALERAQEIVRSTPNSIWAQQFANQANIQAHYTGTGPEIWDASEGAVDVFIAGVGT GGTITGAGRYLREQKPDVKLIAVEPADSPILSGGQAGPHKIQGIGANFVPEILDTDLYDE VYPATFEESIETARRLGTEEGILGGISTGAIISAALKEAAKPESEGKLIVAIVCDFGERY ISTALFEDIRG >gi|289557140|gb|ADCD01000067.1| GENE 26 18857 - 19444 418 195 aa, chain + ## HITS:1 COG:Cgl2509 KEGG:ns NR:ns ## COG: Cgl2509 COG1045 # Protein_GI_number: 19553759 # Func_class: E Amino acid transport and metabolism # Function: Serine acetyltransferase # Organism: Corynebacterium glutamicum # 7 189 2 182 182 239 69.0 2e-63 MGLFSRIKEDIATVRTHDPAARGDLEVALVYSGLHAVWAHRVAHRMWRHDRLKMPARVLS QVTRAATGIEIHPGASIGRRFFIDHGMGVVIGETAEIGDDVMLYHGVTLGGRSLAKVKRH PTLRDGVVVGAGAKILGPVEIGEGTAVGANAVVVKDTPADAIATGVPATVRPRKGPAEGK PLVDPAEYVDPALWI >gi|289557140|gb|ADCD01000067.1| GENE 27 19491 - 20660 877 389 aa, chain - ## HITS:1 COG:BH3831 KEGG:ns NR:ns ## COG: BH3831 COG2866 # Protein_GI_number: 15616393 # Func_class: E Amino acid transport and metabolism # Function: Predicted carboxypeptidase # Organism: Bacillus halodurans # 24 372 16 340 351 84 28.0 3e-16 MTSPLTSSLSRRSALSVLASAAGLPLVVAPAASAAGSLPTPSDTPPMDAIRNMADMIREL HKLERTTRGEVRVTTLAEIGTADSRSEQGRELYVAVVGHGPRHVWLQGRIHGNEPYGLDA TLDVLATLGGNGSATYRRMREEFTVHVIPMYNPDGSEANSRTTTLWDRTADSPLLDERGR PRTVDLNRDWGVGRFEARESRAWYEYWTMVKPEFALDIHHQGLKQDWETGKDVTLSLGVS LAPGGPTLPNVRGGEYDRLARQMAGHVWLATRHRGHIATDRYDVGENTVIDIRGGVVSAM MLGLDWNGLNPTGHSNVAIFFETSGNTRDGSIGQKARGKLVQQNILAVTAALDGMATGAV RATDPEVWEQIPHTPVQYYFTDYAGIIPA >gi|289557140|gb|ADCD01000067.1| GENE 28 20799 - 22361 1431 520 aa, chain - ## HITS:1 COG:Cgl1417 KEGG:ns NR:ns ## COG: Cgl1417 COG0362 # Protein_GI_number: 19552667 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphogluconate dehydrogenase # Organism: Corynebacterium glutamicum # 13 502 8 484 484 563 58.0 1e-160 MTEQTTTVPVGAADIGVTGLAVMGANLARNFARHGYTVALHNRSRARTDQLVAEHGDEGA FVATETLAELVQSLAVPRRVLIMVKAGAPVDAVIDQLVPLLEEGDIVIDAGNSHYEDTRR REAALAEKGLHFVGVGVSGGEEGALHGPAIMPGGPEKSYEALGPMLEKISAQFEGEPCCA WVGTDGAGHYVKMVHNGIEYADMQVIGEAYDLLRRVGGLEPAEQAEVFTAWNQTDLASYL IEITAEVLAQVDAATGRPLVDVIVDEAGQKGTGRWTAISGLDVGSPVAAIAESVFARSLS SQRAVREVARETLAAGVDEEAQRAPQDTDTFVEDVRQALFASKLVAYAQGMDMLAAAAEE YGWSLDLGTIASLWRDGCIIRADLLDVIMQAFGGRDTSRHPAPGTRAPGQPLNLLFAPEF AQAIAEALPAWRRVVGTAVAAGVPVPVFSSALAYYDGLRADRLPAALVQGQRDFFGAHTY LRVDREGSFHTLWSGDRTEVDGEGVPVVMPQPTEGDPTQD >gi|289557140|gb|ADCD01000067.1| GENE 29 22441 - 23355 1020 304 aa, chain - ## HITS:1 COG:Cgl2657 KEGG:ns NR:ns ## COG: Cgl2657 COG2326 # Protein_GI_number: 19553907 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Corynebacterium glutamicum # 11 304 13 306 306 401 68.0 1e-111 MELLQPDAPRENLREFIDKLRDGGYTVSDGHTNDPDLIDPQGRAVETWKEDYPYETRMTR EEYELEKYRLQIELLKLQYWGEDTGQRHIIVFEGRDAAGKGGTIKRFTEHLNPRTARVVA LNKPSDRELGQWYFQRYIQHFPTAGEIVLFDRSWYNRAGVERVMGFATDEQYRRFMNQVP LFEKMLVDDGIHLTKFWFSVTQTEQRTRFAIRQIDPVRQWKLSPMDLESLDRWEAYTEAK EAMFLHTDTDHAPWISIRSNDKKRARLNAMRYFLSQFEYEGKDHEVVGTPDPLIVRRGRD AVGD >gi|289557140|gb|ADCD01000067.1| GENE 30 22504 - 24151 405 549 aa, chain + ## HITS:1 COG:no KEGG:PANA_1234 NR:ns ## KEGG: PANA_1234 # Name: not_defined # Def: hypothetical protein # Organism: P.ananatis # Pathway: not_defined # 1 215 33 247 290 117 35.0 1e-24 MVLALVLELGQEVAHRVEAGPLLVVGADGDPRGVVRVRVEEHGLLGLRVGLPAVQGLEVH GRELPLADRVDLADREARALLGLRDGEPELGEVDAVVHEHLLEQRYLVHEAAVLLVRGEA HHALDAGAVVPRAVEQHDLARRGEVLDVALEVPLAELAVRGLVEGHDAGGAGVQVLGEAL DGAALAGGVAALEDDDVALAGVLAPVLQLEQFDLQAVLLQLVLLARHARLVRVVLLPRLH GTALRIDQVGIVGVTVRDGVAAVAQLVDELAQVLAGGVGLQQLHGPSPSLGASPCPPVPS SVRRRRAAACALPTIMGGRRTRKPGPAAQPGEQQVNPGRRTLAAPGRRGPADSAARADTQ ELVDRRGGGTRRVDVGELGDGVVVPAVPGKLEADGCAVRGREDPDPAAWLDVALLGHVGL LELAVVAGPLDTGPRGVGTVEDVTAAHAQTGDGLQERVQGAGGGLAGQLVLEEGEDGPLP VLEEEHGLLRLAPGDDGEVTGGAVGTCGQLPEAEGGRGHALHPSAPRTPTTRRRPAPAPH PGLSCRGCA Prediction of potential genes in microbial genomes Time: Thu May 26 07:48:03 2011 Seq name: gi|289557131|gb|ADCD01000068.1| Micrococcus luteus SK58 ctg1119142780310, whole genome shotgun sequence Length of sequence - 8614 bp Number of predicted genes - 8, with homology - 8 Number of transcription units - 4, operones - 2 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 28 - 2499 1880 ## COG2217 Cation transport ATPase 2 1 Op 2 . - CDS 2505 - 2723 192 ## Mlut_21360 copper chaperone 3 1 Op 3 . - CDS 2765 - 3145 404 ## COG1937 Uncharacterized protein conserved in bacteria 4 1 Op 4 . - CDS 3185 - 3955 587 ## COG0394 Protein-tyrosine-phosphatase 5 2 Tu 1 . + CDS 4153 - 5397 863 ## COG1169 Isochorismate synthase + Term 5428 - 5480 -0.8 - Term 5567 - 5620 17.6 6 3 Tu 1 . - CDS 5640 - 5861 200 ## Mlut_21320 hypothetical protein - Prom 6032 - 6091 2.8 7 4 Op 1 . + CDS 6258 - 7130 682 ## COG3662 Uncharacterized protein conserved in bacteria 8 4 Op 2 . + CDS 7114 - 8520 1250 ## COG0820 Predicted Fe-S-cluster redox enzyme + Term 8533 - 8592 1.3 Predicted protein(s) >gi|289557131|gb|ADCD01000068.1| GENE 1 28 - 2499 1880 823 aa, chain - ## HITS:1 COG:Cgl0382 KEGG:ns NR:ns ## COG: Cgl0382 COG2217 # Protein_GI_number: 19551632 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Corynebacterium glutamicum # 20 818 17 747 755 585 49.0 1e-166 MTHPASSAPAGPQSETTRRVDLDVTGMTCASCVGRVERKLGKLDGVTASVNLPLEQATVT APAGVSDEELVAAVEKAGYGATVRRPAPPAGHAGHAGHAHTSEHGEGHGEEHAADHDGVD HHDHMAHGPSEDVLKPRLIGAAVLTVPLVLISMVPALQFPHWGWVAFALAAPVALWAAWP FHSAAFRAARHGSSTMDTLVSLGVLVSFFFSAVELILAPDMTAHVGGTMAEMAHHSLYFE AAAVITTFLLLGRWLEARAKREAGAALRALLDLGAAQATLYDPETHDERTVPAESLAPGD VVLIRPGEKVPTDAEVLEGTSAVDASLLTGESVPVEVGPGDALTGATLNTSGRLVARATR VGSDTTLAQMGRLVSEAQTGKARVARLADRISAVFVPIVLGIAVLTFAVWMLVTGDLPSA LRAGLAVLVIACPCALGLATPVGLLAGTGRASQLGILIRGPEVLEDSRTVDTIVLDKTGT VTEGRMALADVLVLDPAFVAETDAPRSAFVAETAPDRAADVLLTLAAAVERGSEHPIARA IVTGAEERGLSVPDVADFASTAGGGVSGLVALPHDDGALGSGAHGAAGPAPVRVAVGRGS VLETALDGGIPAEHRAAFEAAEQAGATAVWVAVGGRVAGVLSVRDTVKETSADAIARLKE LGLRPLLVTGDNAAVATQVADAVGIPAEDVVSGVRPEDKVDVVTRLQSEGAVVAMVGDGV NDAPALAAADMGIAMGSGTDVAREAAQITVMGDDLHQVVQALDLSRRTLGIIRMNLFWAF LYNVLGIPVAALGLLNPMIAGGAMAASSVLVVLNSLRLTRYAR >gi|289557131|gb|ADCD01000068.1| GENE 2 2505 - 2723 192 72 aa, chain - ## HITS:1 COG:no KEGG:Mlut_21360 NR:ns ## KEGG: Mlut_21360 # Name: not_defined # Def: copper chaperone # Organism: M.luteus # Pathway: not_defined # 1 72 1 72 72 89 97.0 3e-17 MTTTDLKITGITCGHCVASVREELGEIAGVSAVDVDLNAGGVSTATVTSEGPLDPAAARA AVEEAGYTLVEG >gi|289557131|gb|ADCD01000068.1| GENE 3 2765 - 3145 404 126 aa, chain - ## HITS:1 COG:ML2609 KEGG:ns NR:ns ## COG: ML2609 COG1937 # Protein_GI_number: 15828408 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Mycobacterium leprae # 35 126 48 134 135 94 52.0 5e-20 MSTDSTTTAPAAASPLPSAAADACDGHRPPHEVHRDKAKHLARLRRIEGQVRGLHRMVDE DVYCIDVLTQVAAVTKALQSLSLNLTSEHLRHCVAEAAVQAEAEGRTELIDEKVAEATAA LGRLLR >gi|289557131|gb|ADCD01000068.1| GENE 4 3185 - 3955 587 256 aa, chain - ## HITS:1 COG:Cgl1476 KEGG:ns NR:ns ## COG: Cgl1476 COG0394 # Protein_GI_number: 19552726 # Func_class: T Signal transduction mechanisms # Function: Protein-tyrosine-phosphatase # Organism: Corynebacterium glutamicum # 34 235 3 204 213 100 30.0 3e-21 MAPIPPDPHADHATAVDDMPLDTTAAPDTPAAVGPVPHGMAAHVLEREVGPLMARFPGVA DEATVRQLLFDSYAELAATSRHPEMLPTTSVQHAASRLRARAINQGSIESRHPRVLFVCH GNAGRSQMAAALLENRTHGEVRARSAGTEPAGEVISTAFEAMNEIGIPLHHTYTKGLDPD VLRAAEIVVLFDGADPFEIPEGAQVQTWSVPSIRGMSLEQVRGVRDALDLQVRGLIADLG EAAADAPLPDADTRAG >gi|289557131|gb|ADCD01000068.1| GENE 5 4153 - 5397 863 414 aa, chain + ## HITS:1 COG:BS_dhbC KEGG:ns NR:ns ## COG: BS_dhbC COG1169 # Protein_GI_number: 16080252 # Func_class: H Coenzyme transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Isochorismate synthase # Organism: Bacillus subtilis # 153 411 127 395 398 144 38.0 4e-34 MSVRSLLPDLGTPATGTPEAAVPPFARAVLWAHGDDAWRGEGGWTVLLDGTDRLRRLSAL WQAAVAGRPDPTAPLRGWISSTFADDSPEPAVLRIPADLRRATPSGVRDVAQHVDVDALA AAVAADRGARLLADGAVPLPADVADRAWDDAGYAAGVRELLTRMADSGGELAKVVISRTM TVPADDADLWRAMGALRREYPQTWVFAVGGLLGATPEVLATRHAGLVGSRVLAGSMPRGV DAEEDAALRERLASDPRLAEEHRWAARSVLDALAPVVDLADDDPAPTVLTLPNVHHLATS VRGRLRDGRGTVLDVVAALHPTAAVGGTPTPDAVRVIAEVEPVDRGRYAGPVGWLDQDGD GEIALALRCGQQVPGGVRLQAGGGMVPGAVPEEEVTEIRAKFLPMRRALGVAED >gi|289557131|gb|ADCD01000068.1| GENE 6 5640 - 5861 200 73 aa, chain - ## HITS:1 COG:no KEGG:Mlut_21320 NR:ns ## KEGG: Mlut_21320 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 73 28 100 100 94 98.0 1e-18 MQRHVLQRVEETLLRRFEGTVTAETVRSVVREVVADLKRGARITTFLPALAEREAARRLQ AATPAHEAMAVAA >gi|289557131|gb|ADCD01000068.1| GENE 7 6258 - 7130 682 290 aa, chain + ## HITS:1 COG:MT0288 KEGG:ns NR:ns ## COG: MT0288 COG3662 # Protein_GI_number: 15839657 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Mycobacterium tuberculosis CDC1551 # 19 263 45 297 306 99 32.0 7e-21 MRPDRHSAPTSAAALAREAVILAGAGAAILLQVAHQPVGAGVAVHSRFTEDPMRRLRHTL AYIYAVTLPEAAPVRDAVVERVRAAHRPVRGVDAGGHPYDAADPDAQLWVAATLYAMGEQ VRRRVWGALDAEDADRLYRGYAPLATSLEVPASAWPADRAAFAVYWDDRVARLEVTDDAR RIATDLFSGQGVPLPLRAALPLARFVTAGLLPGRVRAGLGWSWTGRDSVREARLWGLART LYRPLPATVRGVVVRWVLRGLPRTPEPRGAVDVEATRREVRPVWENGADV >gi|289557131|gb|ADCD01000068.1| GENE 8 7114 - 8520 1250 468 aa, chain + ## HITS:1 COG:MT2947 KEGG:ns NR:ns ## COG: MT2947 COG0820 # Protein_GI_number: 15842421 # Func_class: R General function prediction only # Function: Predicted Fe-S-cluster redox enzyme # Organism: Mycobacterium tuberculosis CDC1551 # 95 464 3 361 364 409 59.0 1e-114 MVPMSDYQPRRPGSKPTPNRQRDRAGKPALGRPERGLIDESEARQLAEDRERMRRAGVGH QLSAPKRREAATAERPQVMPKTEGWTQPMGPDGRPQLQFKQPRVSQPPTHLADLTLKERQ EKAKEIGLPAFRAKQLSVHYFEHYTTDPEQMTDLPRDKREAIAEAFFPPLLTEVRRMETD RGDTVKFLWRLFDGALVESVLMRYPGRVTLCVSSQAGCGMNCPFCATGQAGLTRNMSTAE IVEQIVLANQVIAAGGLGGKRKDGGHDADRVTNVVFMGMGEPLANYKRVMAAVHRMVDPS PEGLGMSARNITLSTVGLVPAIRKLAEEGVPLTFALSLHAPDDELRDELIPVNSRWKADE AIDAAYDYFVATGRRVSIEYALIKDMNDHAWRADLLAKKLNARGKGWVHVNPIPLNPTPG SIWTASEKDVTREFVDRLNAAGIPTTLRDTRGKEIDGACGQLAAEDVD Prediction of potential genes in microbial genomes Time: Thu May 26 07:48:09 2011 Seq name: gi|289557125|gb|ADCD01000069.1| Micrococcus luteus SK58 ctg1119142776914, whole genome shotgun sequence Length of sequence - 5080 bp Number of predicted genes - 6, with homology - 5 Number of transcription units - 4, operones - 2 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 800 413 ## COG0122 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase 2 2 Tu 1 . + CDS 1004 - 1468 438 ## Mlut_17620 hypothetical protein + Term 1678 - 1724 4.0 3 3 Op 1 . - CDS 1484 - 3268 1553 ## COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 4 3 Op 2 . - CDS 3309 - 3653 105 ## - TRNA 3498 - 3582 57.0 # Tyr GTA 0 0 5 4 Op 1 . + CDS 3792 - 4280 389 ## COG1666 Uncharacterized protein conserved in bacteria 6 4 Op 2 . + CDS 4321 - 4824 454 ## Mlut_17660 hypothetical protein Predicted protein(s) >gi|289557125|gb|ADCD01000069.1| GENE 1 3 - 800 413 265 aa, chain + ## HITS:1 COG:MT0150 KEGG:ns NR:ns ## COG: MT0150 COG0122 # Protein_GI_number: 15839523 # Func_class: L Replication, recombination and repair # Function: 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase # Organism: Mycobacterium tuberculosis CDC1551 # 5 264 71 307 308 132 41.0 8e-31 VTARAWGAGASAAVAGVERLLGLHDDGWGAFDALLRPDSGAPALPRHVREARRTRAGLRL PAAGALSRQLLTAVLEQKVTHDQARHGWRTLVRLAARIDDDGPAPGPVPPGMLPPPTPAA VLRIPSWDWHARAWVQPSQSRTMLEVARRAASIDRLGDAVAPGDTAGVAALARRLESVPG IGPWTTAEALQRSHGAADLVSVGDYHLAQFVGQVLTGRRTDDAGMLRLLAPWAGHRQRVV RMIGLSGERKQAFGPKLAPADHRAH >gi|289557125|gb|ADCD01000069.1| GENE 2 1004 - 1468 438 154 aa, chain + ## HITS:1 COG:no KEGG:Mlut_17620 NR:ns ## KEGG: Mlut_17620 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 154 1 154 154 265 100.0 3e-70 MTTAFEPRPHTAAAPREPDPHGPGTPGSLRPGARGSVLIVTRHPDPDEAMRHAMAWITAF EEDCGLVLDTDETALYAVGRAGDLGEALRRGPLVHEDGSPADTSAFVDAVLTDGTWRLRD ADPRAWSTTYRAAILGAAPEAVCTIWDVFPLPAA >gi|289557125|gb|ADCD01000069.1| GENE 3 1484 - 3268 1553 594 aa, chain - ## HITS:1 COG:MT2580 KEGG:ns NR:ns ## COG: MT2580 COG0318 # Protein_GI_number: 15842033 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II # Organism: Mycobacterium tuberculosis CDC1551 # 9 577 13 546 547 554 51.0 1e-157 MTESTAPESFTQGPTDVELLEQTLAQNLDDTARRFADRAALLECGPDGDPATGRTWTYRQ LREESVTVAKALMAAGYEAGDRIGMWSPNVAEWVSLLYGAARAGVILVNLNPAYRAHELT YVVEQCDMRGLVVACADARMDPPATARAVARESAPHLRQLIMLPAGSGEDAYAHVQAGDV ADRHAADPVAEGTWADFLAGAARVSDEDLAVREAATRPADPVNLQYTSGTTGFPKGVTLT HRNVLNNGFHIGELLGYTEEDTVVIPVPFFHCFGMVIGVIATVSHGSLAVIPARSFEPVS ALRAVAATGATSLYGVPAMFIAMLARPEADALDLSTLRTGVMAGSTCPVEVMKKVIDRFH MSEVAICYGMTETAPVSTMTRRDDSLEVRTQTVGRTMPHVETKIVEPVTGDIVPRGATGE LCTRGYSVMLGYWDAPEKTAEVLDADGWMHSGDLASMDEDGSVRIEGRIKDLVIRGGENI SPREVEEFLYTHPDIQDVQVVGVPDEKYGEQLMACVIMKDGVEPLTVDAVREFAAGRIAH FKIPAHVRVLDAFPMTVSGKVRKVELREEGAKVVQAQAQAQAQAQAQAQAQSVG >gi|289557125|gb|ADCD01000069.1| GENE 4 3309 - 3653 105 114 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLYSRLSPDRCGRPRDAQQPPGGTADFPSGQRGLTVNQLALPSLVRIQYLPPERRPRDHT VPGSSAVRGPGRGRGAPRVPAPGGGGPPPGDVACLWSVSHPMPSAVRRRHGRAS >gi|289557125|gb|ADCD01000069.1| GENE 5 3792 - 4280 389 162 aa, chain + ## HITS:1 COG:MT0592 KEGG:ns NR:ns ## COG: MT0592 COG1666 # Protein_GI_number: 15839964 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Mycobacterium tuberculosis CDC1551 # 3 162 2 163 163 159 61.0 3e-39 MASDSTFDVVSKVDSQEVSNALNQAQKEIAQRYDFKGVGAEIDFSGEKILMKASSEERVK AVKDVFESKLVKRGISLKSLDAGAPFASGKEYRIEATMKEGIDQPTAKKITKLIRDEGPK SVKAQIQGDELRVSSKSRDDLQSVIAMLKDFEDADLQFVNFR >gi|289557125|gb|ADCD01000069.1| GENE 6 4321 - 4824 454 167 aa, chain + ## HITS:1 COG:no KEGG:Mlut_17660 NR:ns ## KEGG: Mlut_17660 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 167 1 167 167 272 97.0 3e-72 MLYLIDPRGAVWSADTTIGRARARARVDGRPVDDLKFTKAAMLLTFDDHVDLALRHGLAA PRGLLLDHGFVAQVLAPTNLKAQRANQDAIAEQLAVVERRTEDVGSLRSHRHAAAYEGAD QSLERRIKKAEEAARETLQAAPDEDLVRHWTRLGGAVPATLQADRDR Prediction of potential genes in microbial genomes Time: Thu May 26 07:48:22 2011 Seq name: gi|289557122|gb|ADCD01000070.1| Micrococcus luteus SK58 ctg1119142776976, whole genome shotgun sequence Length of sequence - 1110 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 313 237 ## Mlut_16390 hypothetical protein 2 2 Tu 1 . - CDS 369 - 1103 541 ## Mlut_16400 putative homoserine kinase type II (protein kinase fold) Predicted protein(s) >gi|289557122|gb|ADCD01000070.1| GENE 1 2 - 313 237 103 aa, chain + ## HITS:1 COG:no KEGG:Mlut_16390 NR:ns ## KEGG: Mlut_16390 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 103 509 611 611 162 96.0 4e-39 WSLERGPEAIATALQAADLFTAAGDREGAAQAELFAAYVVAEDGSPEQAATLFRLVCDAT DSTLVRLGALTGLHQCLSTLGDHDGAARVRDELDALREGLGAD >gi|289557122|gb|ADCD01000070.1| GENE 2 369 - 1103 541 244 aa, chain - ## HITS:1 COG:no KEGG:Mlut_16400 NR:ns ## KEGG: Mlut_16400 # Name: not_defined # Def: putative homoserine kinase type II (protein kinase fold) # Organism: M.luteus # Pathway: not_defined # 16 222 183 389 411 234 92.0 3e-60 MAAAGAAGVPVPAVRAAPEHGVLPLASVPGLPWRALLAGPEAAALDPARVAALLDRLPPV PEEPPGPAGPTAGAAGGADADAGGPAVLLEHAMWAAVVLDPEAQDETAVRADRLRAGLAA GDPGPRVPVHGDLHPGNLHVDAAGERITGVLDADDLGMGHRVDDWAVLIAHLEAGAVDLG AGGAALRVVAARFRHHARTEVDEVALAARVAIVLAALAAQPTAPRAVRSARRAAADAALA RVGL Prediction of potential genes in microbial genomes Time: Thu May 26 07:48:32 2011 Seq name: gi|289557117|gb|ADCD01000071.1| Micrococcus luteus SK58 ctg1119142776911, whole genome shotgun sequence Length of sequence - 5140 bp Number of predicted genes - 5, with homology - 5 Number of transcription units - 3, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 68 - 475 310 ## Mlut_17830 major facilitator superfamily transporter 2 2 Tu 1 . - CDS 498 - 1622 733 ## COG1522 Transcriptional regulators 3 3 Op 1 28/0.000 + CDS 1161 - 2363 1229 ## COG1071 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit 4 3 Op 2 24/0.000 + CDS 2366 - 3415 1006 ## COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit 5 3 Op 3 . + CDS 3412 - 4899 1196 ## COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes Predicted protein(s) >gi|289557117|gb|ADCD01000071.1| GENE 1 68 - 475 310 135 aa, chain + ## HITS:1 COG:no KEGG:Mlut_17830 NR:ns ## KEGG: Mlut_17830 # Name: not_defined # Def: major facilitator superfamily transporter # Organism: M.luteus # Pathway: not_defined # 1 135 298 432 432 173 97.0 2e-42 MDRFGRRAVAVPCLTLLGTGFLAISLTREPTAFAAAAVLLGIGNGFGAGIVMTLGADHSP PNARAQFLGLWRSMSDAGMLAGPLLLSGATAAAGLAVGVGSLAVVCGVGAVVFAAVLPRG PGAVADPPPVVVRSR >gi|289557117|gb|ADCD01000071.1| GENE 2 498 - 1622 733 374 aa, chain - ## HITS:1 COG:AGl1389 KEGG:ns NR:ns ## COG: AGl1389 COG1522 # Protein_GI_number: 15890819 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 223 357 10 147 156 92 36.0 2e-18 MPGALVGHHHLERRDAAGDHGHGVAVGREQPVVLAQADGGGDLGGLLAVRGRIDGHAALA HQGVGLVVDAAADDEVAVGGQQLLVGGQRILVAGLGALLLRGQQSAVLADQLDAAGGGEQ VLLEGDAEGGAGVRAGLGLVGPGGPGHGGGGVTHGGSSRSVAFSVPKRVNVSRARPGSRD DPVQIRHSIGRTAIVTRATETVRRRVADPVRPAPGGAMAAEPLDRVDRAIVRELTQDGRM SVAALAERVHISRAHCYSRLNRLQDAGVITGFTVRVDPVKVGFGASAHVTMKLRQHDWRE LRATLLAIPEVSHVSLVGGNMDVILLVRARDTADLRRVIFDELQTLPSVVDTQTYMVFDD QASGQTIPPDETAD >gi|289557117|gb|ADCD01000071.1| GENE 3 1161 - 2363 1229 400 aa, chain + ## HITS:1 COG:MT2572 KEGG:ns NR:ns ## COG: MT2572 COG1071 # Protein_GI_number: 15842025 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit # Organism: Mycobacterium tuberculosis CDC1551 # 42 396 20 367 367 296 46.0 5e-80 MSDPTPAVPGAARTDEAETRPNAGAAFGISLEEYLLPAARRIQLIGEDGTLLAPEEQGTE PGHEYPLPSDEELLAAYRHLVIGRRVNDQAYALVRQGRMAVYPSSHGQEASEVAAAVCLG EDDWLFPTYRDTVAVIARGVPPLEVMVAYQGTWHQGYDPRKHHVSIQSTPLTTQMLHAVG MAKAARLRGEEVVCLAMVGDGGTSEGDFHEALNFAAVFKLPVIFFVQNNKFAISVPFAKQ SAAPSLAHKAVGYGLAGERVDGNDLGALLAVLGRAVELCRQGQGPFLVEADTYRMQAHTN TDDPSRYRDDAEVKEWEARDPLRRMTAYLESTGALTEEVSAQIARDAEDVAQQLRDAMNA ETELDPLELFDHVYSVQTPQLAAQRAQLAEELSRSENQEA >gi|289557117|gb|ADCD01000071.1| GENE 4 2366 - 3415 1006 349 aa, chain + ## HITS:1 COG:MT2571 KEGG:ns NR:ns ## COG: MT2571 COG0022 # Protein_GI_number: 15842024 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit # Organism: Mycobacterium tuberculosis CDC1551 # 3 336 25 342 348 306 49.0 4e-83 MATLTFAAALNAALADEMAADDMVVVFGEDVGTLGGVFRITDGLTARFGEERCFDTPLAE SGIAGMAVGMALGGARPVIEMQFDAFAYPAFEQIASHVAKMRNRTKGATPMPITIRIPYG GGIGGVEHHCDSSETYYAHTPGLKVYTPASVKDAYMMLRSAIRLDDPVVFMEPKKMYWTK AELDLDQLRAEFEEGWARVEDKKEHGEAWARAAVVREGTDVTLVSYGPSVPTCLAAAHAA AEEGLSVEVVDLRTVNPLDEDTMTASVAKTGRAVVVAEPQGFASVASELVARIQQRCFHS LAAPVGRVTGFDIPFPAPKLEEHHLPNIDRILDAIDDLNWDLDAEEARA >gi|289557117|gb|ADCD01000071.1| GENE 5 3412 - 4899 1196 495 aa, chain + ## HITS:1 COG:BS_pdhC KEGG:ns NR:ns ## COG: BS_pdhC COG0508 # Protein_GI_number: 16078524 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes # Organism: Bacillus subtilis # 1 492 1 439 442 219 35.0 1e-56 MSNTFLLPDLGEGLTEADIVRWLVAEGDTVAVDQPMVEVETAKALVEVPSPYAGTVLTLH GAEGETMDVGSPLITIGEAGESGEGSAPVAGTETLAVPPSTGADAAEAARPGALSYREEE MAGVQPKPDKARGGDGDVAGSDDEASGAVLIGYGTSGHKATSRSRPSKRGRGAARPTPAP TAEAGAPRVTSPIVRKLAREKGVDVAALTGTGPHGLITRADVLTAAGGSAPQAAPTPAPS AAAPAAEAAAQPGAVDGRTGLAVVARTSISGVRKVIADQLSRSRREVPEVTAWLDVDVTA LLELRAALKAKDPENAPSLLGLIARFTLAGLRRYPVMNARIEAGADGKDEIVEVDGVHLG LAVQTDRGLMVPSVEHAEKLSADELTAAINDTVSRARAGRAAPAELTRGTFTLNNYGPLG TDGATPIINVPEVGMLGIGRIIDRPWVVDGEIVVRKVTEMTVTFDHRVTDGATASAFLTF VADCLHDPMAALARI Prediction of potential genes in microbial genomes Time: Thu May 26 07:48:40 2011 Seq name: gi|289557104|gb|ADCD01000072.1| Micrococcus luteus SK58 ctg1119142780330, whole genome shotgun sequence Length of sequence - 11656 bp Number of predicted genes - 12, with homology - 12 Number of transcription units - 6, operones - 3 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 2/0.000 - CDS 45 - 680 396 ## COG3328 Transposase and inactivated derivatives 2 1 Op 2 . - CDS 1258 - 1722 146 ## COG0500 SAM-dependent methyltransferases 3 2 Tu 1 . + CDS 1930 - 3297 926 ## COG1541 Coenzyme F390 synthetase 4 3 Tu 1 . - CDS 3673 - 5001 825 ## Trad_0629 cytochrome P450 5 4 Tu 1 . - CDS 5124 - 5624 274 ## COG0597 Lipoprotein signal peptidase 6 5 Op 1 5/0.000 - CDS 5779 - 7728 1467 ## COG2217 Cation transport ATPase 7 5 Op 2 . - CDS 7725 - 8087 290 ## COG0640 Predicted transcriptional regulators 8 6 Op 1 1/0.000 + CDS 8241 - 8990 701 ## COG0785 Cytochrome c biogenesis protein 9 6 Op 2 3/0.000 + CDS 9039 - 9785 414 ## COG1651 Protein-disulfide isomerase 10 6 Op 3 . + CDS 9827 - 10489 574 ## COG4243 Predicted membrane protein 11 6 Op 4 2/0.000 + CDS 10545 - 10931 257 ## COG0640 Predicted transcriptional regulators 12 6 Op 5 . + CDS 10967 - 11654 560 ## COG1230 Co/Zn/Cd efflux system component Predicted protein(s) >gi|289557104|gb|ADCD01000072.1| GENE 1 45 - 680 396 211 aa, chain - ## HITS:1 COG:MT2587 KEGG:ns NR:ns ## COG: MT2587 COG3328 # Protein_GI_number: 15842041 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Mycobacterium tuberculosis CDC1551 # 1 195 22 215 436 242 64.0 3e-64 MTAPHIVDPAGLLGEALSEASPDMMRHLLQTMINTLLCADADAVVGAEWGKPSRDRTAQR NGYRHRDLDTRVGTVDVAIPKLRSGTYFPEWLLERRKRAESALITVVADCYLAGVSTRRM DKLVKTLGINALSKSQVSRMAADLDEQVEAFRHRPLGEAGPFTFVAADALTMKVREGGRV VNAVVLIATGVNGDGTAKCWACGWHSETGAA >gi|289557104|gb|ADCD01000072.1| GENE 2 1258 - 1722 146 154 aa, chain - ## HITS:1 COG:mll5735 KEGG:ns NR:ns ## COG: mll5735 COG0500 # Protein_GI_number: 13474772 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Mesorhizobium loti # 51 153 12 113 247 65 37.0 5e-11 MGRPDSVGGPGPADRPCWRLPMPKMSGIETAFCRSALWGRFARDIIVPWSLGGQDLGGDV LELGAGSGQMAAALLQRSPGMRLTLTDIDERMVATARRRFPTSPRLTVQQADSTALPFAE SSFDVVLSFLMLHHVVNWKAAVAEAARVLKPGAC >gi|289557104|gb|ADCD01000072.1| GENE 3 1930 - 3297 926 455 aa, chain + ## HITS:1 COG:YPO1981 KEGG:ns NR:ns ## COG: YPO1981 COG1541 # Protein_GI_number: 16122223 # Func_class: H Coenzyme transport and metabolism # Function: Coenzyme F390 synthetase # Organism: Yersinia pestis # 6 404 7 377 428 111 28.0 3e-24 MTESRLWLLCDARAAHRQGRAGLDRRRHERLVEMVSFARARSPFYRRLYQHLPEQLTDPV LLPVTGKAELMRHFDDWVTDRAVTLSAARAFVEDPALVGEKFLGRYTVGTTSGTTGTRGI FLWDERSLAVTTALLARLLGTWLTPADVLRMLARGGRIAMVNATGGHYASAAAAAALRKN RWGSDRIGVFGVHTPMAQLVAGLNDFRPAILAPYATMGALLAAEQRAGRLHINPALVVLS AEALPEGEYDRIAATYNAKVRQGYAATECPFLTYSCQHGWLHVNSDWVLLESVDADHRPV PPGQPSHTTLLSNLANKVQPILRYDLGDAVFVRPDPCPCGDPLPAIRVRGRTADLLTFHT PAGEPVVLTSLTVTAWVDRVPGVELVQLVHTAPTHLEVRMQFSAGTDPERLWQAVHTEIR RLLVDHGLGHVTVARGDGPPQPTPGGKFRAVIPLP >gi|289557104|gb|ADCD01000072.1| GENE 4 3673 - 5001 825 442 aa, chain - ## HITS:1 COG:no KEGG:Trad_0629 NR:ns ## KEGG: Trad_0629 # Name: not_defined # Def: cytochrome P450 # Organism: T.radiovictrix # Pathway: not_defined # 9 437 2 437 441 383 48.0 1e-105 MPGATPIGDEAEVPTLGAVDHLRVLTRVLLGPVVKGPIVRRPAAVGLAERLDADAAGVAE MQRLRSRYGAGPVQLRIPGRRIALLLDPADVRRVLNDSPTPFSPATLEKRGALNHFEPAG SLVSTPQQRLSRRPFNEQILETPRPVHSHAEAMKAVITEEVSTLGGHVDFTGTLDWESFA VMWARMVRRIVLGASARDDDQVTDDLRRLRARGNFSYLMPQNRRLRERFLRRLQHYIELA EPGSLAALVAQTPAPDEAVPHQQVPQWLFAFDAEAWATFRALALLTNHPGATGTARSEVA HAPDLPFLRATVLESLRLWPTTPLILRDSTATTHWRNGTLPPDTALVIYAPFFHRDDQTL PQAHRFSPELWLQERDDNAWPLVPFSAGPGMCPGRNVVLLTSSLVLGELLRQHDFTAQEP LDTGQLPGTLSPFSSHFTVRHD >gi|289557104|gb|ADCD01000072.1| GENE 5 5124 - 5624 274 166 aa, chain - ## HITS:1 COG:MT1591 KEGG:ns NR:ns ## COG: MT1591 COG0597 # Protein_GI_number: 15841006 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Lipoprotein signal peptidase # Organism: Mycobacterium tuberculosis CDC1551 # 10 161 35 184 202 88 40.0 6e-18 MNHRRRYPLVLLTVAIGAGVVVLDQGTKWWAENSLSTGERVPVLGDLLGLQLAYNPGAAF SLGATSTWIFTVISAVAVAAAIWFSLRVRTVSWALLVGCLGGAVTSHLGDRLLRPPSFGQ GHVVDFLAYGNWFIGNVADIFIVGGAAAAVLLTATSPDRDTADTPQ >gi|289557104|gb|ADCD01000072.1| GENE 6 5779 - 7728 1467 649 aa, chain - ## HITS:1 COG:MT2048 KEGG:ns NR:ns ## COG: MT2048 COG2217 # Protein_GI_number: 15841474 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Mycobacterium tuberculosis CDC1551 # 8 634 133 759 771 496 56.0 1e-140 MSSACGCEAPTPGAPEEPEEHRPWWRDAAILLPVLSGVAFIAGLVLEWSGAGLVATVVFW VGLVLGAWTFVPGALRGLFTRGRLGIGLLMTISAIGAVILGYIEEAAALAFLYSIAEALE DKAMDRARAGLRALLKLVPETATIRQGGATVQVEAKDLHPGQVLVVRPGERIATDGIVRT GRSSLDTSAITGESIPVEVGPGDTVSAGSINTSGALEIDATAAGTDNSLTTIVHLVEQAQ TEKGARARLADRIAKPLVPGVLVLAVLVAALGSLFGDPELWITRALVVLVAASPCALAIA VPVTVVSAIGAASRFGVVIKSGAAFERLGGIRHLAVDKTGTLTRNQPTVTAVLTTPGLTE DQVLGWAAALEQHSTHPLAAAIIAAAPDAPGAKAVTETAGHGITGRIDGATITVGSPRWL DPGPLAAQVQQLEDQGMTVVIIHRDGTVAGAIGVRDELRPEVPAVVTTLTGQGIGLTMLT GDNARTARAIAAQAGIGDVRAELRPEDKAAAVGQLTGTRPTAMIGDGINDAPALAAAEVG IAMGATGSDAAIESADVAFTGHDLRLIPQALAHARRGRAIMNQNIVLSLLIIGVLLPLAI TGMLGLAAVVLVHEVAEVIVIGNGLRAATTRRTALASLTDRQAQRSTVG >gi|289557104|gb|ADCD01000072.1| GENE 7 7725 - 8087 290 120 aa, chain - ## HITS:1 COG:Cgl0882 KEGG:ns NR:ns ## COG: Cgl0882 COG0640 # Protein_GI_number: 19552132 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Corynebacterium glutamicum # 1 117 1 116 119 167 81.0 6e-42 MLTIATRLDVMNRLGRAMADPTRSRILLNLLEGPGYPAELAQALGLTRSNVSNHLACLRD CGIVAAEHQGRRTRYAIVDAHLARALSALLEVTLAVDASAPCLDPGCPVPGCCDTGQVAS >gi|289557104|gb|ADCD01000072.1| GENE 8 8241 - 8990 701 249 aa, chain + ## HITS:1 COG:MT0549 KEGG:ns NR:ns ## COG: MT0549 COG0785 # Protein_GI_number: 15839921 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Cytochrome c biogenesis protein # Organism: Mycobacterium tuberculosis CDC1551 # 7 231 4 240 259 152 44.0 5e-37 MSLGGFFAEMVQSGALLVAMPLAAIAGLVSFLSPCILPLVPGYLGYVSGLADPRRADNRR RVMTGVGLFILGFAAVFTFYGAAFGVIGGWLLQWQDALIRALGVFVVLMGLVLIGWLPFL QNTRRMSFQPKTGIVGAPLLGVVFGLGWTPCMGPTLSAVLALSTTTGDPWRGALLGFLYC LGLGIPFVLVAMGLDWVTRTLGFVRRHIRAFNIIGGILLVLVGVLMVTGIWTLWIYQLQN LAGTFTTPV >gi|289557104|gb|ADCD01000072.1| GENE 9 9039 - 9785 414 248 aa, chain + ## HITS:1 COG:AF1354 KEGG:ns NR:ns ## COG: AF1354 COG1651 # Protein_GI_number: 11498950 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Protein-disulfide isomerase # Organism: Archaeoglobus fulgidus # 76 225 126 271 305 75 32.0 8e-14 MTSTDPTPAKAASAPNRQRRAKIIVWVVLAALVLAGVVAFFAARAPSTPEAAPAQAGQAA SSGTGQTAASEAAPVVRPDSRVLSQAPNEKAVLVEFLDFECEGCKAAHPVVEELRAEYAD TVTFVHRYFPLPGHPNSMTAAVAVEAAAQQGAYEAMYQKMFDTQEQWSHTGQDRSPVFRG YAEDLGLDMTAYDKAVADPATRARIEADVADGVALGVQGTPTFFLDGQVLTLNTLEQFRA EVDAAASN >gi|289557104|gb|ADCD01000072.1| GENE 10 9827 - 10489 574 220 aa, chain + ## HITS:1 COG:Cgl0786 KEGG:ns NR:ns ## COG: Cgl0786 COG4243 # Protein_GI_number: 19552036 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Corynebacterium glutamicum # 36 175 16 155 196 111 45.0 1e-24 MTTPTIPTDHPIEHRVDTGPASEEAGMPVAARHRPFGVVLLVTGVVGWVASAILVLERLA LYENPGHTTSCDINPWVSCGRVMGTWQSELFGFPNPLIGIVAFAVVIATAMVVLSGARPG RGYWAGLQAGVTLGMGFVAWLWFQALYEIYILCLYCMIVWAAMIPLFILLTARNLAHGVI PAPPGVVRFATGWAGTLIAVAYVAVAGSVFVQFLPAFTGL >gi|289557104|gb|ADCD01000072.1| GENE 11 10545 - 10931 257 128 aa, chain + ## HITS:1 COG:SSO2688 KEGG:ns NR:ns ## COG: SSO2688 COG0640 # Protein_GI_number: 15899409 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Sulfolobus solfataricus # 20 94 10 84 115 59 42.0 2e-09 MTMIKEPGVSPTAGLGPAAALFHGFSDPTRLAILRHLATGEHKVRELTEHLGLAQSTVSA HLACLTGCGLVSSRPVGRASLYSLAAEPELLEVLAAAERLLTVTGHAVELCPHSGPAATG ALPHDAGH >gi|289557104|gb|ADCD01000072.1| GENE 12 10967 - 11654 560 229 aa, chain + ## HITS:1 COG:XF0866 KEGG:ns NR:ns ## COG: XF0866 COG1230 # Protein_GI_number: 15837468 # Func_class: P Inorganic ion transport and metabolism # Function: Co/Zn/Cd efflux system component # Organism: Xylella fastidiosa 9a5c # 4 200 26 224 321 154 49.0 2e-37 MGSHHHAPTGHRGRLAIAFGITTAVLLAEVVGAVLTGSLALLVDAAHMLTDAGGLLMALL AATLMARPPTTRRTWGFLRAEVLAALAQAAVLLAVGTYAFIEGLQRLFAPPEVASGPLLA FGILGLVGNLASLAVLGSGRGANLNMRAAFLEVLNDALGSVAVIASALVIAATGWTRADA VAGMLIAVLIVPRTLKILGETPGSCSIPPEAGSGRVRTHSGAAARGVVH Prediction of potential genes in microbial genomes Time: Thu May 26 07:48:47 2011 Seq name: gi|289557101|gb|ADCD01000073.1| Micrococcus luteus SK58 ctg1119142780221, whole genome shotgun sequence Length of sequence - 968 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 361 113 ## Mlut_06720 glycosyltransferase + Prom 192 - 251 1.9 2 2 Tu 1 . + CDS 382 - 967 323 ## COG1388 FOG: LysM repeat Predicted protein(s) >gi|289557101|gb|ADCD01000073.1| GENE 1 1 - 361 113 120 aa, chain - ## HITS:1 COG:no KEGG:Mlut_06720 NR:ns ## KEGG: Mlut_06720 # Name: not_defined # Def: glycosyltransferase # Organism: M.luteus # Pathway: not_defined # 87 120 1 34 398 62 97.0 5e-09 MPGTRPGRGCELTSSADDRVREDAEEAPVWRTGCNRSVIKIHDRYRNAIRNSDDAQVADR RATRPARHPPRAAVPAPLRRGASVVRVSPSRPLRLLMDARYTRTDFHDGISRYGASLIEA >gi|289557101|gb|ADCD01000073.1| GENE 2 382 - 967 323 195 aa, chain + ## HITS:1 COG:BS_yojL_1 KEGG:ns NR:ns ## COG: BS_yojL_1 COG1388 # Protein_GI_number: 16079001 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: FOG: LysM repeat # Organism: Bacillus subtilis # 59 174 158 279 302 59 35.0 5e-09 MAAGPVREEDPMSVTSSRAAVRRAPRTAAASVALALGAAALTGVGTVSVAETAQAAETTY TVRSGDGWWIIAQRTGVSMSTLQSLNGMTAATVLHPGMVLKTSGTATPAPAPAPSTSGST YTVLAGDGWWIISYRTGVSASVLQSINGMSSSTMLHPGMVLKTTSVSTSSAPAPAPAPAS KQLPSTTCAPPSGTR Prediction of potential genes in microbial genomes Time: Thu May 26 07:48:55 2011 Seq name: gi|289557088|gb|ADCD01000074.1| Micrococcus luteus SK58 ctg1119142780342, whole genome shotgun sequence Length of sequence - 14850 bp Number of predicted genes - 13, with homology - 13 Number of transcription units - 10, operones - 3 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 19 - 1959 1853 ## COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases 2 2 Tu 1 . + CDS 2194 - 3000 680 ## COG0177 Predicted EndoIII-related endonuclease 3 3 Tu 1 . - CDS 3022 - 3441 265 ## Mlut_18210 predicted flavoprotein involved in K+ transport 4 4 Tu 1 . + CDS 3226 - 5073 991 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 5 5 Tu 1 . + CDS 5235 - 6560 858 ## COG4962 Flp pilus assembly protein, ATPase CpaF 6 6 Tu 1 . + CDS 6665 - 7684 544 ## Mlut_18180 type II secretion system protein F 7 7 Tu 1 . + CDS 7861 - 8094 222 ## Mlut_18170 hypothetical protein 8 8 Op 1 . + CDS 8207 - 8530 126 ## Mlut_18160 hypothetical protein 9 8 Op 2 . + CDS 8527 - 8982 278 ## Mlut_18150 hypothetical protein 10 9 Op 1 . - CDS 8886 - 11477 1664 ## COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster 11 9 Op 2 . - CDS 11474 - 12121 623 ## Mlut_18130 acetyltransferase (GNAT) family protein 12 10 Op 1 . + CDS 12341 - 13270 795 ## COG1054 Predicted sulfurtransferase 13 10 Op 2 . + CDS 13267 - 14848 1156 ## COG2890 Methylase of polypeptide chain release factors Predicted protein(s) >gi|289557088|gb|ADCD01000074.1| GENE 1 19 - 1959 1853 646 aa, chain - ## HITS:1 COG:MT3768 KEGG:ns NR:ns ## COG: MT3768 COG0365 # Protein_GI_number: 15843284 # Func_class: I Lipid transport and metabolism # Function: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases # Organism: Mycobacterium tuberculosis CDC1551 # 1 638 1 647 651 800 63.0 0 MDEQIPTFPPPAEFAAQAVAGADLYEEAAEDRLAYWARRAREVLHWEQDFTDVLDWSDAP FAKWFVGGTTNAAYNALDRHVEAGHGDRVAIHFEGEPGDTRTYTYADLAAEVRRAANAFE SLGVTKGDRVAVYLPMIPEAVITMLACARIGAVHSVVFGGFSSDALRSRVDDAEAKLVVT ADGSFRRGKPSMLKPAVDQALSAPGHTAEHVLVVRRNEAEVEMTEGRDLWWHDVVDAKSD EHELVWHDAEHPLYILYTSGTTGKPKGILHTTGGYLVQAAVTHHDTFDLHPESDVFWCTA DVGWVTGHSYVAYAPLVNGATQVIYEGTPDSPHQGRWWEIVQKYGVSILYTAPTAIRTFM KWGRHIPDEYDLSSLRVLGSVGEAINPEAWRWYHEVIGAGRCPIVDTWWQTETGAHMLTP LPGVTTLKPGSAQRPVPGVVLEVVDELGEHLTDTSAGFLVVREPWPSMLRGIWGDRERFK ETYWSRFPGMYFAGDGARYDEDGDIWLLGRVDDVMNVSGHRLSTTEIESSLVAHPSVAES AVVGAKDETTGEAVVAFVLLTEVAAAADRDVAEVEEELRQHVGKDIGPIAKPKLVLVVPE LPKTRSGKIMRRLLKDVAEGRDPGDSTTLADPTVMQRIVETLAPKA >gi|289557088|gb|ADCD01000074.1| GENE 2 2194 - 3000 680 268 aa, chain + ## HITS:1 COG:ML2301 KEGG:ns NR:ns ## COG: ML2301 COG0177 # Protein_GI_number: 15828233 # Func_class: L Replication, recombination and repair # Function: Predicted EndoIII-related endonuclease # Organism: Mycobacterium leprae # 10 235 14 239 253 278 62.0 8e-75 METEPTGTPTGETRLALVRRARRINRILAETYPYAVAELDFETPFELLVATVLSAQTTDV RVNAATPALFARFPDAHAMAAATEPELQELVRSTGFYRNKASAILRLSQELVARHDGEVP ARLEDLVALPGVGRKTAFVVLGNAFGQPGITVDTHVGRLARRLGFTDETDPVKVEHAVGA LFPRRDWTMLSHRLIFHGRRVCHARRPACGACPIARWCPSYGAGETDPERARALLAYELK PGREELLELLRAGRTRRELRALGHGLEA >gi|289557088|gb|ADCD01000074.1| GENE 3 3022 - 3441 265 139 aa, chain - ## HITS:1 COG:no KEGG:Mlut_18210 NR:ns ## KEGG: Mlut_18210 # Name: not_defined # Def: predicted flavoprotein involved in K+ transport # Organism: M.luteus # Pathway: not_defined # 1 139 263 401 401 207 93.0 1e-52 MVPSVIRARDEAGLHAVPAPTALTPEGVRWDHDAGASHGWPAASRAAARVRGAEHPVDDV VWCTGFRADLRHLRSLELTRRPSGAPATERALPTASVDVPGLHLLGYDDWCGAASATLAG VGVHARRAVDAILAGLTAG >gi|289557088|gb|ADCD01000074.1| GENE 4 3226 - 5073 991 615 aa, chain + ## HITS:1 COG:Cgl0295 KEGG:ns NR:ns ## COG: Cgl0295 COG0494 # Protein_GI_number: 19551545 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Corynebacterium glutamicum # 423 606 58 232 247 134 44.0 4e-31 MAQVRPEARAPDDVIHRVLGPAHPGRGAAGGGPAVASAGVVVPTDALRRERRGRGDRVEP GLVAGADHRGHHDDVPEVAHARLGAAQHARRGPIEEHPPVDVVRHEPGRTPGGPRGGDTR QQQVRRDLGARVAAAHHEDAPPGERVGGAVRGGVPLRAAEAVGAREGRHERAGERAGRGD HRAGAQGRAVLESQGERRGRGGVVRHRRDAHAPVHRQPVAVLVVGQVRDDVPGVRGAGAG RRRHGSARQGGVLGGGEQAQGVPVVRPRAAGLGGRVEQDERRRRARPASAVDVPRGPRQE VAGRQSGLAGADHRDVHRIRGRGGRRGRGQGSRHAPRLRPAASVGAMPETPASPRPTSRD AAGTSEASLTGARDQLADLVARWGTAPADAPGRHDPASLTTIPPEAVPMWGFDWPRSGDP RPSAVLILFGALDDVPARHDAERVHPHVDVLLTQRAATLRQHAGQIAFPGGRVDPEDADV VATALREAQEETGLDPAGVEVLGVLPAVPVVVSGHVVHPVLGWWRDPSRVAVVDQAEAAA VFRMPVADLVDPANRCRVARPGGRRGETPGFLVGERLVWGFTAALLDRVLALLGWDVPWD DSRVRDARTHEILRG >gi|289557088|gb|ADCD01000074.1| GENE 5 5235 - 6560 858 441 aa, chain + ## HITS:1 COG:MT3759 KEGG:ns NR:ns ## COG: MT3759 COG4962 # Protein_GI_number: 15843272 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Flp pilus assembly protein, ATPase CpaF # Organism: Mycobacterium tuberculosis CDC1551 # 103 388 14 307 352 206 52.0 1e-52 MRPFVPAAPARPPRGRRSRLAPPEVGRRFPWPRTGAAEPERTQVAAPPLAAPAAGPCGLD VAAVRRRVAEARASAADGAEPPLAPLIAEALDAPIDDPRVAALVDELDGFGPLAPWVRTP GVTDVLVDGAGAVWTDGDEGLVRRPGRLDPETAGALAVRLLHRAGRRLDAAVPLADARVG GVRVHAVLPPVSGGGTLLSLRIPAATTPSLAALADGWPDGALWADALEALVRDRATVLVS GATGAGKTTLLSAALGRVPGDERIVVVEDTAEAAPDHPHVVALQCRAANAEGAGEVGLAE LVRHALRMRPDRLVVGECRGAEVADVLTALNTGHQGAWGTLHANAAAEVPARLTAMASLA GWRPETVAAQARAGVDAVLHLARDGHGRHPVELAVPDPRADGFALLPALTWRPGTEAAGG RTIEGPGVPALAARLAGRSGR >gi|289557088|gb|ADCD01000074.1| GENE 6 6665 - 7684 544 339 aa, chain + ## HITS:1 COG:no KEGG:Mlut_18180 NR:ns ## KEGG: Mlut_18180 # Name: not_defined # Def: type II secretion system protein F # Organism: M.luteus # Pathway: not_defined # 1 339 1 339 339 419 96.0 1e-116 MLVGVLRRWAALVSAGLTEEQAWRETACTLPACGPGPSEAGTACCAHHRARRRAEALAWD VPASHAPTGEAARGGGTLPWRTPARDPGWALIDAALAAGARAGAAPAAVARRLAHSLEAD VDAARARRSAAAGPGATSRLLQWLPLGGLGLAWLLGTSPWDLVRSPFGAVVAAVGLLFWL AGRSWTRVLLRAAAREPAAVGAAVVLDVLAALLSAGRALPAALDDLGRTLPGAPGLRATA ALLLWGRDWDEAWAGLDTDPVWIETAARLRPLHRSGMAGARTLAETAAAVRQQTRRADER AAEELAVRLVMPLGLCLLPAFVCWGVVPVVMALLGAGPG >gi|289557088|gb|ADCD01000074.1| GENE 7 7861 - 8094 222 77 aa, chain + ## HITS:1 COG:no KEGG:Mlut_18170 NR:ns ## KEGG: Mlut_18170 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 77 1 77 77 116 96.0 2e-25 MTHRSHTAQHAVTRPSDRDRLARVVDAAGDETGAITAEYGILTLAAVGFAGVLAVVLTSP DVQSLLVDLVTGALQRD >gi|289557088|gb|ADCD01000074.1| GENE 8 8207 - 8530 126 107 aa, chain + ## HITS:1 COG:no KEGG:Mlut_18160 NR:ns ## KEGG: Mlut_18160 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 107 41 147 147 124 94.0 8e-28 MIAFVLVSVLLAGAAAVQQVRGQDAAASAARILARGDDEAAARDAVARMAGDDASLSHTV EGGWVTVEVVQPGPGPLAWAGALTLTAHATAPDQGPGTPAAGPEDRS >gi|289557088|gb|ADCD01000074.1| GENE 9 8527 - 8982 278 151 aa, chain + ## HITS:1 COG:no KEGG:Mlut_18150 NR:ns ## KEGG: Mlut_18150 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 151 1 147 147 92 92.0 4e-18 MTRGRAPARGERGSGTVSVLGTAALGAGLLLAVAALGQASVTGARAAGAADLAALAASDA RRGLSDHEPCVLAGRTAERNGAAVVACEVREDGAVRVAVELARAPLPAATADAVAGPPRS QAPGAASVAPPEDPPEAPSPEPSVEASAGTR >gi|289557088|gb|ADCD01000074.1| GENE 10 8886 - 11477 1664 863 aa, chain - ## HITS:1 COG:Cgl0307 KEGG:ns NR:ns ## COG: Cgl0307 COG1205 # Protein_GI_number: 19551557 # Func_class: R General function prediction only # Function: Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster # Organism: Corynebacterium glutamicum # 85 824 27 775 785 628 48.0 1e-179 MTGHLPEHDPWADPAGGWGPPGTADAAPDFSGPEPQPVGEVVADVVAGLSVTAPGDLRPD TPAGAGLRAALGRAGLPEQIRTSPSCPHGKARHTDWPADAPEGLVRAFAARGVERPWLHQ VRAATLAGSGTHTVLATGTASGKSLGYQLAVGTRLAADPRATALYLAPTKALAADQLTSW RALERDGAPGLRAAPYDGDTALQDRIWAREHATVLMTNPDMLHVGILPHHERWAAFFRNL AFVVVDESHTYRGVFGSQVGILLRRLRRIAAHYRGDRPETVFIGASATSADPAGHFARLI GAPATAVTEDASPHGAVTVAFWEPELTDRRGENGAPVRRSAMAAAADLVTDLALQQVRTL AFIRSRRGAEAIASAAKRQLEEVEPGLGTRIAAYRSGYLPEERRQLEADLRSGRLLGMAS TPALEMGIDVAGLDAVVVAGWPGTRASFFQQIGRAGRGGQDALAFFVASDDPLDTFVVDH PEAVFDLGVEDTVVDPENPHLLGPQLCAAAAELPITPEAFGWFGEPERVRALLDVLVEQG LLRRRPAGWFWTHPEHAAGMVSLRDDGGGPMDIIDAESGALLGTMDSPQTHYQAHPGAVY VHQDRTYLVEELDEDAHAVVVTRAWPDFTTQARDVTEIEIVAVHRRLDAREGTLRWCLGD VQVRTQVVSFQRKALASGEVLGEEPLDLPARDLLTSAVWFQAASDELIAAGLTTDRLPGA LHAAEHAMIGMMPLVASNDRWDIGGVSMVLHPDTGSPAVFVYDGRPGGAGFAERGFEQAR RWVEATAGAIAACECAQGCPSCVQSPKCGNRNSPLDKAGALTVLRFLMDHADHLVPADAS TDGSGDGASGGSSGGATDAAPGA >gi|289557088|gb|ADCD01000074.1| GENE 11 11474 - 12121 623 215 aa, chain - ## HITS:1 COG:no KEGG:Mlut_18130 NR:ns ## KEGG: Mlut_18130 # Name: not_defined # Def: acetyltransferase (GNAT) family protein # Organism: M.luteus # Pathway: not_defined # 1 215 43 257 257 389 98.0 1e-107 MIPGGSGRATVDVPATWEHVVVNPSRAELEDLREALRDQEQILLTVFGDAGEDPKAMGLK AQAEPERFMTMDMDPELQDVEPPLLPEGYEARVDQPMEGSRRLRILAVGASTAPEGEEEL AALGWVTEEDGTAVYDRIWTSPNHRRRGLGSLVMRYLTSEVMSEGEISRGLLVASPDGQK LYRHLAWTDLGPVSIWGRGLAEDNPTAEHTGTMGA >gi|289557088|gb|ADCD01000074.1| GENE 12 12341 - 13270 795 309 aa, chain + ## HITS:1 COG:Cgl2936 KEGG:ns NR:ns ## COG: Cgl2936 COG1054 # Protein_GI_number: 19554186 # Func_class: R General function prediction only # Function: Predicted sulfurtransferase # Organism: Corynebacterium glutamicum # 7 294 4 289 312 330 52.0 2e-90 MSTAPLSRIALYYRFTPLADPEAVRLWQRTLAASLGLTGRIIVSPQGINGTVGGPVDAVK RYVRGTREHPAFRDLEVKWSDGSAADFPRLSVKVKPELVAFGAPERVTVDADGVVGTGER LTPAQVDALVAERAGTANPVRFLDGRNTVEAAIGRFDGAVVPDAHTTRDLLAAVDSGALD HLKDAPLITYCTGGVRCEVLSALLKDRGFAEVYQLDGGIVRYGEARGDAGLWRGELAVFD RRLSTRFTADAETIGRCVTCQAPTSALRNCADPACTTLEVRCAACAVDDPEHRCPVCAHR PHPAERTEA >gi|289557088|gb|ADCD01000074.1| GENE 13 13267 - 14848 1156 527 aa, chain + ## HITS:1 COG:Cgl1871 KEGG:ns NR:ns ## COG: Cgl1871 COG2890 # Protein_GI_number: 19553121 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methylase of polypeptide chain release factors # Organism: Corynebacterium glutamicum # 16 432 4 381 509 142 33.0 2e-33 MSPVPTPPSPPAPRLTPATAVALAADLAALPFTTAAVEGLLGPVATLALDREHAEAARRV VAGHLASPGRHDDAAGSDDRHGTRGLAAAVGAWLLGDPVPAVDLDAALPSLGLAGAVAAG LVVEGPDGRVRGAVDLSPYEADEPGRMWIASDLTALQRRGPLPPEHVLGVGRASLTLAGA TQRRPVARALDVGVGCGIQTLHLLAHADHVTATDLSERALAFTRFNLLLNADVLGLDRER LEDRVRLAAGDLLAPVAGERFDLVVSNPPFVITPRTDPDAPVLTYRDGGREGDRIVAELI AALPDVLAEGGTAQLLANWEIPAGDTADADTAPWDARPRSWVAPGMQAWFIQRDRQDPAG YAETWLQDSSLELDPPAYEAAYRGYLDDFAARGVAGVGFGHVWLRRPAADGSQGRGWVVA EELTQPVDEALGGAWAAAVARRDRLAAGPGAGDAVGDPALAALRGLHLRVAADVTEERHQ RFGAEHPEVILARQGSGFRRVARLDTATAGVLSASDGELSVGQLVGA Prediction of potential genes in microbial genomes Time: Thu May 26 07:49:38 2011 Seq name: gi|289557028|gb|ADCD01000075.1| Micrococcus luteus SK58 ctg1119142780352, whole genome shotgun sequence Length of sequence - 65407 bp Number of predicted genes - 54, with homology - 52 Number of transcription units - 27, operones - 8 average op.length - 4.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 2/0.000 - CDS 2 - 944 613 ## COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase 2 1 Op 2 4/0.000 - CDS 1171 - 2433 1095 ## COG0192 S-adenosylmethionine synthetase 3 1 Op 3 . - CDS 2449 - 3741 927 ## COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase 4 2 Tu 1 . + CDS 3740 - 4993 556 ## + Term 5227 - 5277 6.8 5 3 Tu 1 . - CDS 4978 - 5292 225 ## Mlut_12560 hypothetical protein 6 4 Op 1 3/0.000 - CDS 5431 - 6252 669 ## COG0284 Orotidine-5'-phosphate decarboxylase 7 4 Op 2 24/0.000 - CDS 6315 - 9620 2964 ## COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ) 8 4 Op 3 . - CDS 9624 - 10808 1149 ## COG0505 Carbamoylphosphate synthase small subunit 9 4 Op 4 . - CDS 10805 - 11431 360 ## Mlut_12600 hypothetical protein 10 4 Op 5 15/0.000 - CDS 11428 - 12807 1037 ## COG0044 Dihydroorotase and related cyclic amidohydrolases 11 4 Op 6 . - CDS 12804 - 13715 784 ## COG0540 Aspartate carbamoyltransferase, catalytic chain 12 5 Tu 1 . + CDS 12840 - 14438 628 ## 13 6 Op 1 6/0.000 - CDS 14569 - 15021 363 ## COG0781 Transcription termination factor 14 6 Op 2 . - CDS 15014 - 15577 454 ## COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) 15 7 Op 1 20/0.000 - CDS 15696 - 16865 1043 ## COG0337 3-dehydroquinate synthetase 16 7 Op 2 7/0.000 - CDS 16862 - 17473 404 ## COG0703 Shikimate kinase 17 7 Op 3 5/0.000 - CDS 17563 - 18798 983 ## COG0082 Chorismate synthase 18 7 Op 4 4/0.000 - CDS 18878 - 19801 613 ## COG0169 Shikimate 5-dehydrogenase 19 7 Op 5 4/0.000 - CDS 19801 - 21069 880 ## COG1559 Predicted periplasmic solute-binding protein 20 7 Op 6 9/0.000 - CDS 21066 - 21635 286 ## COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) 21 7 Op 7 . - CDS 21595 - 24306 2504 ## COG0013 Alanyl-tRNA synthetase 22 7 Op 8 . - CDS 24303 - 24692 305 ## Mlut_12730 hypothetical protein 23 8 Tu 1 . - CDS 24864 - 25490 1047 ## PROTEIN SUPPORTED gi|239917776|ref|YP_002957334.1| SSU ribosomal protein S4P 24 9 Tu 1 . - CDS 25794 - 27191 1146 ## COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase 25 10 Tu 1 . + CDS 27091 - 27834 281 ## Mlut_12770 hypothetical protein 26 11 Tu 1 . + CDS 27975 - 29714 1414 ## Ndas_4764 alkaline phosphatase-like protein 27 12 Tu 1 . + CDS 29778 - 30326 319 ## COG1490 D-Tyr-tRNAtyr deacylase + Term 30494 - 30534 -0.7 28 13 Tu 1 . - CDS 30466 - 32280 1578 ## COG0173 Aspartyl-tRNA synthetase 29 14 Tu 1 . + CDS 32426 - 33718 1058 ## COG0531 Amino acid transporters 30 15 Tu 1 . - CDS 33778 - 35154 1313 ## COG0124 Histidyl-tRNA synthetase 31 16 Op 1 . + CDS 35341 - 36825 1233 ## Mlut_12820 protein of unknown function (DUF349) 32 16 Op 2 . + CDS 36911 - 37528 403 ## Mlut_12830 hypothetical protein 33 17 Tu 1 . - CDS 37540 - 39819 1928 ## COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases - Term 39899 - 39950 11.2 34 18 Op 1 31/0.000 - CDS 39956 - 40996 852 ## COG0341 Preprotein translocase subunit SecF 35 18 Op 2 . - CDS 40993 - 42819 1449 ## COG0342 Preprotein translocase subunit SecD 36 18 Op 3 . - CDS 42890 - 43357 436 ## Mlut_12870 preprotein translocase, YajC subunit 37 18 Op 4 29/0.000 - CDS 43417 - 44439 898 ## COG2255 Holliday junction resolvasome, helicase subunit 38 18 Op 5 14/0.000 - CDS 44436 - 45080 547 ## COG0632 Holliday junction resolvasome, DNA-binding subunit 39 18 Op 6 8/0.000 - CDS 45161 - 45604 335 ## COG0817 Holliday junction resolvasome, endonuclease subunit 40 18 Op 7 . - CDS 45844 - 46605 756 ## COG0217 Uncharacterized conserved protein 41 19 Tu 1 . + CDS 46705 - 48798 1817 ## COG0339 Zn-dependent oligopeptidases 42 20 Tu 1 . - CDS 48805 - 52890 1956 ## COG1073 Hydrolases of the alpha/beta superfamily 43 21 Tu 1 . + CDS 52889 - 55060 1930 ## COG1250 3-hydroxyacyl-CoA dehydrogenase 44 22 Tu 1 . - CDS 55102 - 55824 538 ## Mlut_12980 hypothetical protein 45 23 Tu 1 . + CDS 55854 - 56366 443 ## Mlut_12990 ferredoxin subunit of nitrite reductase and ring-hydroxylating dioxygenase 46 24 Op 1 . - CDS 56374 - 56712 291 ## Mlut_13000 hypothetical protein 47 24 Op 2 . - CDS 56712 - 57686 792 ## COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) 48 24 Op 3 . - CDS 57690 - 58208 452 ## Mlut_13020 hypothetical protein 49 24 Op 4 . - CDS 58205 - 60220 1569 ## COG1154 Deoxyxylulose-5-phosphate synthase 50 25 Op 1 . + CDS 60487 - 61074 441 ## Ksed_23430 protein of unknown function (DUF1541) 51 25 Op 2 4/0.000 + CDS 61164 - 63299 1608 ## COG2217 Cation transport ATPase 52 25 Op 3 . + CDS 63404 - 63646 174 ## COG1937 Uncharacterized protein conserved in bacteria 53 26 Tu 1 . + CDS 63828 - 64451 472 ## Ksed_23390 hypothetical protein 54 27 Tu 1 . - CDS 64829 - 65284 -27 ## gi|281415340|ref|ZP_06247082.1| transposase Predicted protein(s) >gi|289557028|gb|ADCD01000075.1| GENE 1 2 - 944 613 314 aa, chain - ## HITS:1 COG:Cgl1564 KEGG:ns NR:ns ## COG: Cgl1564 COG1198 # Protein_GI_number: 19552814 # Func_class: L Replication, recombination and repair # Function: Primosomal protein N' (replication factor Y) - superfamily II helicase # Organism: Corynebacterium glutamicum # 5 313 60 348 688 156 37.0 6e-38 MTGWLVSREQEPATGAQLTELTGVLTAIPPLTEEVLATARAVARRQAGVVTDVLRAAVPP RVAQVEKAALAEDAEAAADHPVTLTGTDAERSEPPAAEEGLVPTVWESLQGGTAFVSAVL AGDAARAAAVVPSRLFEWDEAGALAALARTVAASGGGVLLLVPDHRDLDRLCAALDEHVG EDAYARIGSEDGNTPRYRAHLAALRGTRRIVAGTRAAVWSPVRDLRLVVLWDDGDDAWAE PRAPYFHAREVVLERARATGAALLFAGPSRSVPVQRLVESGWLLHLGPSRAAQRELGPRV VSTADAWETARDPF >gi|289557028|gb|ADCD01000075.1| GENE 2 1171 - 2433 1095 420 aa, chain - ## HITS:1 COG:Cgl1565 KEGG:ns NR:ns ## COG: Cgl1565 COG0192 # Protein_GI_number: 19552815 # Func_class: H Coenzyme transport and metabolism # Function: S-adenosylmethionine synthetase # Organism: Corynebacterium glutamicum # 24 420 7 406 407 479 63.0 1e-135 MTDAASLSPARHADPYSGVGGGELRLFTSESVTAGHPDKICDQISDAILDAILAADPSAK VAVETLTTTGLVQVAGEVNTSAYVEIPKIVRETILDIGYDSSANGFDGAQCGVNISIGQQ SSDIFAGVSRSLEAREYGSADEVDEQGAGDQGIMFGYATDETPAYMPMPIYLAHRLSERL TAVRRVENTPMPYLLPDGKTQVTIGYAPGHVPTTVEAVVVSTQHHEWVTQEQLRADVEEH VIRPVIERSGLDTSGMRIIINPGGKFVIGGPVGDAGLTGRKIIVDTYGGMARHGGGAFSG KDPSKVDRSAAYMLRWVAKNVVAAGLASRAEFQVAYAIGSARPVGLYVDTFGTATVPEEK IIEAVNAVFDLRPAAIVKELNLLRPIYRRTAANGHFGRDDADFTWERTDRVEQLRAAAGL >gi|289557028|gb|ADCD01000075.1| GENE 3 2449 - 3741 927 430 aa, chain - ## HITS:1 COG:ML0543 KEGG:ns NR:ns ## COG: ML0543 COG0452 # Protein_GI_number: 15827199 # Func_class: H Coenzyme transport and metabolism # Function: Phosphopantothenoylcysteine synthetase/decarboxylase # Organism: Mycobacterium leprae # 3 421 6 412 419 351 54.0 2e-96 MEIVLGVGGGIAAYKAALLLRLMTEAGHGVTVVPTANALEFVGAATWEALSGRPVRTDTF EAVDEVNHVRLGRRADLVVVAPATADLLARTAAGMAPDLLGNVLLTATCPVVLAPAMHTE MWHHPATAANVALLRERGVTVVDPAVGRLTGADSGAGRLPEPAEIWARAQAAAAAGAPRR PRASGPASEAESTPGPLAGRTVVITAGGTREALDPVRYLGNRSSGKQGAALARAALDAGA TVRFVAGSMSVPAPEGVERVVPVESTQDLLEAVLAEAADADVLVMAAAVADFRPAEVSDA KMKKGDDGGAPVIVLERTPDVLATAVRTRSEGGPMAPLIVGFAAETGDATSSVLEYGRAK LARKGCEMLVVNEVGTDKVFGRDETAVTILFADGRPAVEAAGSKDEAAAAVVRAIVDDLA GRDPAGASDR >gi|289557028|gb|ADCD01000075.1| GENE 4 3740 - 4993 556 417 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTGSGLWGVLGGALLDAHRLGGLLDGGGIAHRLVGVGRLEGGERVVLARQGEVAEVLGGQ VGLRGGLDGLVGLEQVGLDLAQGDGQRLLVQLGVHERADVLEQPLVQLRVVGVDLPGPLG GEEHQGVLRVDPLQQGVDGRVDDAFVLFGHGVSKVFISLSRRRRVRRRCGRSSGLGRTVL GVQPHESHQFLGGPLHAVVHDDGVELGFRGEFQSSRFEPAALFLRALGAAAEQSGHEFLP ARRRQEHEGGLRQRTADLARALQVDLQQDVAPLRHGLHHTVAPRAVAVDAVDDGPFQHLV RLDEGVELLRRGEVVVHPVLLARARRAGGGGDGQPGLGVVLADIGRDGALADGGGAGQDG DARARGAFLDGGAGHRDGGGGSGVERVGHASSWWDGPRRPFTRAGADPPGCGGHRPI >gi|289557028|gb|ADCD01000075.1| GENE 5 4978 - 5292 225 104 aa, chain - ## HITS:1 COG:no KEGG:Mlut_12560 NR:ns ## KEGG: Mlut_12560 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 104 1 104 104 88 95.0 9e-17 MALRQLSEQERAEARRKALQARQARAELKAAFAAGEVGLADVFARADAEDAVARLRAVDL LLALPGVGEVRARETMAGCGISPRRRLGGLGRRQREALIAYIGR >gi|289557028|gb|ADCD01000075.1| GENE 6 5431 - 6252 669 273 aa, chain - ## HITS:1 COG:Cgl1570 KEGG:ns NR:ns ## COG: Cgl1570 COG0284 # Protein_GI_number: 19552820 # Func_class: F Nucleotide transport and metabolism # Function: Orotidine-5'-phosphate decarboxylase # Organism: Corynebacterium glutamicum # 3 270 13 270 278 189 46.0 5e-48 METAGPLCLGVDPHPALLRQWGLSDTPAGLEAFSLTALEAAVGPEGPRVAAIKPQVALYE RHGSAGLAALERLLAAARDAGVLTIADAKRGDIGSTMDGYAAAWTSDASPLAADAVTLSP YLGFGTLVPTIRAAHEAGRGVFVLALTSNPEGREVQHVGEGSAEGSVARRIAAAAAAENA TQRGDDAWGPVGLVLGATVAAEADRLGLDLPALGGPLLAPGFGAQGATAPGMRADFGTAW PQVLATSSRGILSAGPSVTSLVDTIEENRAALR >gi|289557028|gb|ADCD01000075.1| GENE 7 6315 - 9620 2964 1101 aa, chain - ## HITS:1 COG:Cgl1571 KEGG:ns NR:ns ## COG: Cgl1571 COG0458 # Protein_GI_number: 19552821 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase large subunit (split gene in MJ) # Organism: Corynebacterium glutamicum # 1 1087 1 1108 1113 1332 64.0 0 MPKRTDLKSVLVIGSGPIVIGQAAEFDYSGTQAIRVLKEEGVRVVLVNSNPATIMTDPEL ADATYVEPITPAVVAKIIEKERPDALLPTLGGQTALNTAIALDKDGVLERFGVELIGANI EAIELGENRELFKGVVERAGGESARSHIVHTMEEALAAVEDLKYPVVVRPSFTMGGLGSG MAYDEADLYRICGAGLQYSPTSEVLLEESILGWKEYELEMMRDKNDNVVVVCSIENVDPV GVHTGDSITVAPAMTLTDREYQKLRDISINVIREVGVDTGGCNIQFAVNPVDGRVVVIEM NPRVSRSSALASKATGFAIAKIATKLALGYTMDEIPNDITQKTPASFEPVLDYVVVKVPR FAFEKFPAADPTLTTTMKSVGEAMAIGRNFTEALQKALRSLEQKGSELAFPQDADAQALL AAARTATTDRLSQTQQALYAGATIEEAFEATAIDPWFLDQFVLINEVADEIRDAEVLDEA LLRRAKRHGFSDAQIGSLRHMDAAVVRGVRHALGVRPVYKTVDTCAAEFEAFTPYRYSSY DLETEVAPHEGESVIILGSGPNRIGQGIEFDYSCVHATMALREAGYETVMVNCNPETVST DYDISDRLYFEPLTLEDVLEVIAAEEASGGVRGVFVQLGGQTPLKLAQQLADAGVPILGT SPAAIDLAEHRGEFALVLERAGLVAPKNGTAVSFDDAKRVADEIGYPVLVRPSYVLGGRG MEIVYSEAALAHYVEHATEITPDQPMLVDRFLEDAIEIDVDALYDGTELYLGGVMEHIEE AGIHSGDSACVLPPVTLGPDVLERVHRATERIAAGVGVRGLINIQFALASDVLYVIEANP RASRTVPFVSKATGVQLAKAAARIGVGESIADLRAAGMLPTAYDGGTLPIGAPVAVKEAV LPFTRFRTAEGRVVDSLLGPEMRSTGEVMGIDKHFDTAFAKSQSAAGGPLPTSGRVFVSV ANRDKRTLVGQAKRLVDLGFQVVSTGGTAEVLRRNGIPAEVVAKIADAGHEDGAGTVLEQ LHAGTVDLVLNTPSGGDARTDGYEIRAAATSLGVPVITTTAEFGACLQAIEAMRSYEWSV TSLQEHDARLQQAVAGPEAAA >gi|289557028|gb|ADCD01000075.1| GENE 8 9624 - 10808 1149 394 aa, chain - ## HITS:1 COG:Rv1383 KEGG:ns NR:ns ## COG: Rv1383 COG0505 # Protein_GI_number: 15608523 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase small subunit # Organism: Mycobacterium tuberculosis H37Rv # 9 380 4 371 376 404 60.0 1e-112 MSTPTDDLALLVLEDGTVHRGRAYGARGRTLGEAVFTTGMTGYQETLTDPSYAGQIIVQT SPHIGNTGVNDADRESRAIFAAGYVVRDAARRPSNWRAERCLDEELEAFGVVGIREVDTR AITRRLRTEGSMRAGVFSGEHAARPEAELLAEVRAQASMAGARLAESVTTEEPYVIEPAA HGWEGEPIAEIAALDLGIKAATPRHLASRGIRVHVLPAATDLAGIRAVDPDGVFLSNGPG DPATADAQVELLREVLDAGLPFFGICFGNQIFGRALGFDTYKLKFGHRGPNQPVLDKATG RVAITSQNHGFAVDAPLGEPIEAPESRFGRVEVSHWSLNDQVVEGLRLLDRPAFSVQFHP ESAAGPNDTLDLFDRFVQLLTEHRTATTPATEGA >gi|289557028|gb|ADCD01000075.1| GENE 9 10805 - 11431 360 208 aa, chain - ## HITS:1 COG:no KEGG:Mlut_12600 NR:ns ## KEGG: Mlut_12600 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 208 1 208 208 310 98.0 3e-83 MSITPLAAALAARPVPPRTPTKDYADVWLPVTLGTLAVVLVLLGLLALGWRARRRAQAGI PAPAPVPTALYDAEPTLSAEGMHVGTVRGEDRLDRVAVHGLGLRSRAVLEVHDAGAHRGL LVLRPRAANLFIPADDLVEAGLSAGIAGKFVEPGGLVAWGWRLGDVELTSAFRPDRPEDR DRLLAALQTIIDPAPADPAGRAGEGDPR >gi|289557028|gb|ADCD01000075.1| GENE 10 11428 - 12807 1037 459 aa, chain - ## HITS:1 COG:Cgl1573 KEGG:ns NR:ns ## COG: Cgl1573 COG0044 # Protein_GI_number: 19552823 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotase and related cyclic amidohydrolases # Organism: Corynebacterium glutamicum # 3 441 15 442 447 405 51.0 1e-113 MSAPSPAPLLLRSARLTTGETADVLVAEGRIAALGPDAAAHAAGFEPTPEEVDCAGLVLL PGLVDLHTHLRQPGKEDAETVETGTRAAAMGGFTSVHAMANSTPTADTAGVVEQVWRLGR DAGWCDVHPVGAVTVGLAGEALADLGAMADSQARVRMFSDDGMCVHDAVLMRRALEYVKS FGGFVAQHAQEPNLTAGAQMNESELSGVLGLAGWPAVAEEAIIARDVLLAQHVDSRLHVC HVSTAGSVELIRWAKAQGVAVTAEVTPHHLLLTEELVRSYDPVFKVNPPLRRESDVLALR AGLADGTIDTVGTDHAPHTAETKQCEWTVAAMGMTGLETALSVVQQAMVDTGLMDWAGVA RVMSTAPARIAGLTDQGQADERGVPRVGAVANLVLVDPQARRTVDPEQHVTKSRNSPYRG MELPGAVRHTVYRGARVVADGAPARPYRHPALTETGERA >gi|289557028|gb|ADCD01000075.1| GENE 11 12804 - 13715 784 303 aa, chain - ## HITS:1 COG:Cgl1574 KEGG:ns NR:ns ## COG: Cgl1574 COG0540 # Protein_GI_number: 19552824 # Func_class: F Nucleotide transport and metabolism # Function: Aspartate carbamoyltransferase, catalytic chain # Organism: Corynebacterium glutamicum # 7 291 32 301 312 306 59.0 3e-83 MAAVNQREVKKLPALRGRTVVNLFLEDSTRTRISFEAAAKRLSADVINFSAKGSSVSKGE SLKDTVQTLEAIGADAIVMRHWSSGAARQLADSGWVRSAVVNAGDGTHEHPTQALLDAFT LRRRLAAATGEDLVGRDLTGMRVVIVGDILHSRVARSNVWLLSTLGAQVTLAAPPTLLPV GVAAWPCQVTYSLDEALDAGPDAVMMLRVQAERMGGAFFPSAGEYTRTWGLTDDRFARLT AGRGALLDEPVVMHPGPMNRGLEISPAAADSPRNTALEQVANGVSVRMAVLHLVLNHDQE VRL >gi|289557028|gb|ADCD01000075.1| GENE 12 12840 - 14438 628 532 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MQDRHADGHAVGDLLEGGVAGRVRRRRADFQAAVHRAGVHDHGLVEQGAAAGGEAGEAVI GQPPGPGVLPRGREEGAAHPLGLDAEHHDGVGAGVEGLVERVGDLARPRGHAHGQQGGRG GQGDLCAQRAEQPHVGPGHARVQDVAHDHHAHAGQVPADQVLSRRRGEAPAQGEGVQEGL GGVLVGAVAGVHDGGAHPAGVGQLAGRAGGPVAHHDGVRADGLERLDGVLERLPLGDGRS LRGEVDHVRGEPLGGRLEGDAGAGGVLEEEVHHGAAAQGGQLLDLALVDGGHLLGGVEDG EGVGAGEVGGGQQVAHGSALPGRDTVDDAHGVLGDLAGALGAVDLHEPDLDALGGGGRQV LAHEVGADGELPVPAVHEDGQAHGGGAAQVGDRVEGGPDGAAGEEDVVHEHDDGAVEGNL GQAGGHRGAGRAAAEVVPVEGDVHLADGGGGVEGRFDAGQQVAESPGQGGPAARDPHQDE TLGALVGLEDLVGDPGQRPVDLGRGQHGPGSTRCGGISSHAGASFPASQDGS >gi|289557028|gb|ADCD01000075.1| GENE 13 14569 - 15021 363 150 aa, chain - ## HITS:1 COG:ML0523 KEGG:ns NR:ns ## COG: ML0523 COG0781 # Protein_GI_number: 15827185 # Func_class: K Transcription # Function: Transcription termination factor # Organism: Mycobacterium leprae # 17 148 7 143 190 119 49.0 2e-27 MTERASAGSAAKRGTTARSRSRQRAVEILFEAEQRGSTALEGIRTRRESTDLQVNAYTQR LVEGVIADQERLDEALSSYSRGWSLDRMPAVDLAILRVGAWELLFQDDVPDAVAISEAVA LAAQLSTDDSPEFVNGLLGRLQQVKPTLLA >gi|289557028|gb|ADCD01000075.1| GENE 14 15014 - 15577 454 187 aa, chain - ## HITS:1 COG:MT2609 KEGG:ns NR:ns ## COG: MT2609 COG0231 # Protein_GI_number: 15842068 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) # Organism: Mycobacterium tuberculosis CDC1551 # 1 186 1 186 187 258 66.0 4e-69 MATSNDIKNGAVLKLEGQLWNVTEFQHVKPGKGGAFVRTKMKNITTGKVVDKTFNAGAKV EFATVDRSDYQYLYQDGADYVFMDVKDYDQITVPGAVVGDAAKYMLENTQVVIALHEGTP LYLEMPASVVLEITYTEPGLQGDRSSAGTKPATVETGAEIQVPLFVEQGTRVKVDTRTGD YLGRVND >gi|289557028|gb|ADCD01000075.1| GENE 15 15696 - 16865 1043 389 aa, chain - ## HITS:1 COG:ML0518 KEGG:ns NR:ns ## COG: ML0518 COG0337 # Protein_GI_number: 15827180 # Func_class: E Amino acid transport and metabolism # Function: 3-dehydroquinate synthetase # Organism: Mycobacterium leprae # 38 384 11 356 361 369 59.0 1e-102 MTDSQPDSTEQETPGAAPAAAPAAPEDVTVIPVAGGHEAAVHGGYDVVVGRGLLARLPDM LGPTVRRVLVIHPRALRATGDVVKNDLEAVGLTALTAEIPDAEEGKHLQVAGFCWQVLGQ NDFTRSDAIVSVGGGAVSDLAGFVAATWLRGIRVVHMPTTLLGMVDAAVGGKTGINTAEG KNLVGAFHNPVGVLADLDTLLTLPANELISGLAEVVKCGFIADPVILDLIEEDPAQAQNP HSARLRELIERSIRVKADIVSRDPRESGAREALNYGHTMGHAIELAERYQWRHGAAVSVG LVFAAELARSLGRLDDATADRHWSVLTALGLPVSYRGDRWQTLLEGIRRDKKNRGDQLRF VLLDGLAQPTTVDIPDASLLFAAYQEIAE >gi|289557028|gb|ADCD01000075.1| GENE 16 16862 - 17473 404 203 aa, chain - ## HITS:1 COG:PM1224 KEGG:ns NR:ns ## COG: PM1224 COG0703 # Protein_GI_number: 15603089 # Func_class: E Amino acid transport and metabolism # Function: Shikimate kinase # Organism: Pasteurella multocida # 29 190 5 167 175 88 38.0 7e-18 MTGALEARLTAAVTVAAAADEDPDARPARRVVLVGPMGAGKTTVGRALAAVTGLPFVDSD ELFTQVHGPIPAFFAEHGEAAFRAEEARVIGHVLGRPAPCVLSCGGGAVLHPGTRRALAE SDSDVVYLAVGEAEALRRVGGGAGRPVLAGDPVGTWRRILAEREGLYREVADLVLDTTGL TAAEAAWRIVGDAHRPRRSESHP >gi|289557028|gb|ADCD01000075.1| GENE 17 17563 - 18798 983 411 aa, chain - ## HITS:1 COG:MT2615 KEGG:ns NR:ns ## COG: MT2615 COG0082 # Protein_GI_number: 15842074 # Func_class: E Amino acid transport and metabolism # Function: Chorismate synthase # Organism: Mycobacterium tuberculosis CDC1551 # 1 400 1 399 401 427 64.0 1e-119 MVRWLTAGESHGPALTGIVEGLPAGIPVTTQDVQDALARRRLGYGRGARMKFEQDAVTIL GGVRHGRTLGSPVAIQVGNTEWPKWEKVMAADPVPAEELDGLARNAALTRPRPGHADLTG MQKYGFDEARPLLERASARETAARVALGTVARAFLGELGVRIVSHTVAFGEAALPAGHPF PVPEDEARLDADPVRCIDPQTSAAMVAEVDDAHRAGETLGGVVEVLAYGVPIGLGSHVHW DRRLDARLAGALMGIQAIKGVQVGDGFATAARRGSAAHDGIARGADGRPRRTSDRAGGIE AGMSTGELLRVSAAMKPIATVPRALPTVDVATGAETTAHHQRSDVAAVPAAGIVAEAMVA LVLADAMLEKFGGDSVAETRRNLEAFQAAVPALPEPGADVVTDGPMGDPLP >gi|289557028|gb|ADCD01000075.1| GENE 18 18878 - 19801 613 307 aa, chain - ## HITS:1 COG:ML0515 KEGG:ns NR:ns ## COG: ML0515 COG0169 # Protein_GI_number: 15827177 # Func_class: E Amino acid transport and metabolism # Function: Shikimate 5-dehydrogenase # Organism: Mycobacterium leprae # 7 286 14 270 278 123 39.0 4e-28 MRTVLHAAVLGRPIAHSRSPVLHAAAYRVLGLDVDYGRRDLGEGEVLAFAAEHLGAPGAA DGGAAAARGQDWLGCSVTMPLKRAAVAAAGHVSDRVRLLGTANTLVRDHPAAPGVVHAEN TDVDGILGALAAAGLDRAARGGTVGVLGNGGTATAAVLAAATLGADSVFFGVRAAARAAE VTALADALGLRWATLTQADLLRRAPGLRAVVATLPPRAADALAAHVPADAALPPLLDAAY DPWPSVLAAAWSRKGGPVASGLSMLLHQGVEQVRLFTARPRAAAGMPEPDWAAVTRAAAD ALGPAAG >gi|289557028|gb|ADCD01000075.1| GENE 19 19801 - 21069 880 422 aa, chain - ## HITS:1 COG:BS_yrrL KEGG:ns NR:ns ## COG: BS_yrrL COG1559 # Protein_GI_number: 16079791 # Func_class: R General function prediction only # Function: Predicted periplasmic solute-binding protein # Organism: Bacillus subtilis # 83 406 13 348 360 101 26.0 3e-21 MTGEHQHARGEDHWDDLLGDEADVHDDLDVFGFVHDEADEADLGAPSQPVDAAGPRRPRR LLRRRGSGSHPAPRVDRGAGRRRTALVLGTVLVAFAVVVGLIVRGFLSGSDHTAVEGDEV TFSVEPGEDLGSVAARLDRAGIVGSARAFERAARDTHSGLVRSGDFVLRERMPAADALAV LQGATDGAVHYVLVERGRRLTEVLDAVAEATGLPREELEAAAQDPTRYGVPAEAGTLEGW LDAGEYRIPVDATAEQVLDALIRPTLAELESLDVRDPAEQRRVLTIASILEAEALPQDYR QVAGAIENRLAPDNTETHGLLQIDATVTYGLGVRSLSFTSGQRQDASNPYNTYVHPGLPP GPIGMPSDAAVEAALDPAETDAYYWVTTDIGTGHTEFSRTYEEHQQHVRTLQRYCASNPG VC >gi|289557028|gb|ADCD01000075.1| GENE 20 21066 - 21635 286 189 aa, chain - ## HITS:1 COG:Cgl1593 KEGG:ns NR:ns ## COG: Cgl1593 COG0816 # Protein_GI_number: 19552843 # Func_class: L Replication, recombination and repair # Function: Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) # Organism: Corynebacterium glutamicum # 34 176 16 162 182 95 46.0 7e-20 MRSTPSSPRCARPEADVSAGQDGAAAASDAVRRGRTLGVDVGRARVGVASADPDGLIATP VATLRRDARRRRDVDELVAHARELDVVAVYVGLPVNLRGEHTPSTQDALDYADAVAAALV EVSHPVPVRLVDERLSTVSAQAGLRAAGRSVKDSRGVIDQAAAVAILQAAVDEQRRTGRW AGQDREQIR >gi|289557028|gb|ADCD01000075.1| GENE 21 21595 - 24306 2504 903 aa, chain - ## HITS:1 COG:Cgl1594 KEGG:ns NR:ns ## COG: Cgl1594 COG0013 # Protein_GI_number: 19552844 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Alanyl-tRNA synthetase # Organism: Corynebacterium glutamicum # 1 902 1 887 888 830 51.0 0 MKSQEIARRWTAFFESRGHRVVPSASLVSPDPSLLFTVAGMVPFIPYFLGEQTPPSPRVV SVQKCIRTADIEEVGKTVRHGTFFQMCGNFSFGDYFKETAIPMAWELLTSSVEDGGFGLD PERLWVTVYREDDEAERIWREDVGVRPERIQRMGKDDNYWNTGQPGPGGPCSEIFYDRGP AYGVDGGPAADDTRYIEIWNLVFMQYRLSAVRSKDDFDIAGELENKNIDTGLGLERLAMI LQGVENMYETDQVRPVLDRAAQLAGRAYTSTEDPADPHYDDDVRLRMVADHVRSALMLIS DGVRPGNEGRGYVLRRLIRRVVRALRLMGVTEPVFPELLPVSRDAMKGTYPVVADEFERI SRIAYAEEKAFLRTIAAGTARLDAAVGQARSAGGGIAGPDAFELHDTYGFPIELTLEIAE EAGVAVDEAGFRALMAEQRDRARADAKAKKSGHTDTAVYQRLRAEGQTHFTGYTEHTTES VVRGLLQNGEEVPSAGAGTELELVLDATPFYAESGGQAADTGLITGDGFRLEVLDVQAPV KGLSVHRVKVLDGEVAAGAQALGAIDLQRRLDGEKAHSGTHLVHAALHQILGPEATQSGS FNKEGYLRFDFRWAESLSAGARSEVEDVVNIAIRDDHTVLTQEMSLEEARALGAMSLFGE KYGDRVRVVEIDGAWSRELCGGTHVGRTAQIGSLTLLGEQSVGSGNRRVEALVGLDSFRH LAAERTLVSELSEMFKAPAEELKDRIGATLDRLKAAEKQVAELRAQALQAQAGQLAGQAQ DVTTSAGTTVRVLAHHAGDVAGDQLRSLALDLRTRIESAGGNAAGTPVLVALTAEAKGRP LVIVATNEAARAAGLKAGAMVKTATGVLGGGGGGKDDVAQGGGQDVTRVGDALDAVVAAV RAA >gi|289557028|gb|ADCD01000075.1| GENE 22 24303 - 24692 305 129 aa, chain - ## HITS:1 COG:no KEGG:Mlut_12730 NR:ns ## KEGG: Mlut_12730 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 129 1 129 129 149 95.0 3e-35 MLRSLLLVGAGAASGWFAHRALGDRAHPATDGTDAPTSDPGSAGGRAGFSARLDPERLAR QAGEAAADAATAALQDGARRLADRVRAQAPWAAPYLPHTGPIIAGETVEPPSHGAARPQT TTTQKDTPA >gi|289557028|gb|ADCD01000075.1| GENE 23 24864 - 25490 1047 208 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|239917776|ref|YP_002957334.1| SSU ribosomal protein S4P [Micrococcus luteus NCTC 2665] # 1 208 1 208 208 407 98 1e-113 MSGNLRTRRTVRHSRALGIALTPKAEKYMERRPYGPGQHGRARRKQDSDYAVRLKEKQRL RAQYNIREAQMRRYFEEAKRTAGLTGENLVELLEQRLDALVLRAGFARTIQQARQLVVHR HILVDGKRVDIPSFRVKEGQMIHVHERSEKMVPFQLAAAGAHQQVLPATPGYLTVEIDKL RATLTRRPKRSEVPVTCEEQLVVEYYAR >gi|289557028|gb|ADCD01000075.1| GENE 24 25794 - 27191 1146 465 aa, chain - ## HITS:1 COG:ML0510 KEGG:ns NR:ns ## COG: ML0510 COG2256 # Protein_GI_number: 15827173 # Func_class: L Replication, recombination and repair # Function: ATPase related to the helicase subunit of the Holliday junction resolvase # Organism: Mycobacterium leprae # 27 464 50 470 473 456 61.0 1e-128 MDDLFSAAHTGADDDGPAGTVAAPHPGAPLAVRMRPRTLDDVLGQRHLMRPGSPLRKLAE PDPDSAAGPSSVILYGPPGIGKTTLAHVIARAPGRTFTELSAITAGVKDVRQVMEQAQRE RDLYGRTTVLFLDEIHRFSKAQQDALLPGVENRWVVLVAATTENPSFSVIAPLLSRSLLL TLRPLTDDDIVGLLDRAVTQERGLNGAVVLEDDARDYLVRMAGGDARRALTVLEAAAGVA LDKAREAGRAAEGAVAVTEEDAAQAMDHHVQRYDKDGDQHYDVISAFIKSIRGSDVDASM HYLARMLEAGEDPRFIARRLIISASEDVGMADPTALQTAVAAAQAVQLIGMPEGRIILAQ AVTHLATAPKSNASYTAVNEAIADVRAGHTGAVPAHLRDAHYPGAAALGHGQGYVYSHDE PHAVARQQYAPDPLVGKDYYRPKAIGHEKRLAEQVAALRRIIRGE >gi|289557028|gb|ADCD01000075.1| GENE 25 27091 - 27834 281 247 aa, chain + ## HITS:1 COG:no KEGG:Mlut_12770 NR:ns ## KEGG: Mlut_12770 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 52 247 1 196 196 270 96.0 5e-71 MRTASGAPGCGAATVPAGPSSSAPVCAALKRSSIGSRVVLGRRVRGWHHGRMRPAAPRTD HTHVLLLRGINVGRSNRVGKDTLIRWAQAAGGEAVTTHLASGNVLFRASSDAAAEGVREG FARRAREEGGLDVPVVLVGVGTLRRALELHDALPWAGGAPQRTQLTVLEDDPAPEAAAAL AALDHGDDRPAGPDRTALEGRLLWTRCATGVADSPLTPARLDRALGVRGTARNLTTVRVL AGLPAGD >gi|289557028|gb|ADCD01000075.1| GENE 26 27975 - 29714 1414 579 aa, chain + ## HITS:1 COG:no KEGG:Ndas_4764 NR:ns ## KEGG: Ndas_4764 # Name: not_defined # Def: alkaline phosphatase-like protein # Organism: N.dassonvillei # Pathway: not_defined # 12 575 5 566 567 426 49.0 1e-117 MRRFARLATAVTAAALSTAFLAPASLSAPAPHSAAAQRAAVADASSGKGVELTRAGTHET GVFGESAAEIPAFDAVSGRLFVVNAQRGAVDIMRLGADAAPVAQRTLSTEGLRTADGSVT DEGATVNSVAVSGGVMAVAVEAAEKTDHGWVVFFDTTTLRYLGGVRVGALPDSLAFSPNG AHVVVANEGEPADDFSVDPEGTISVVSVPKNAQQFSRLTQDAVRTVDFRAYDAGTALPAG VRVSGPDVAVPAGHEPAGRVARNLEPEYVSIDPTGRTAYVSVQEANAVAVVDLKSATLTD LWALTPTDWSTEGVLDVSDKDGGIELHHWPVYGLPMPDGIDTYRWHGQDLIVTANEGDGR EWGDYSDSERVSDLDLCAAEFPDAQALQKKGALGRLKVLTDLGDASVRGCHSSLTTLGGR SFSIYTADGTRLFDSAGMIEEQIARMVGAGELPQWAFNADNDATPSGDSRSDDKGPEPES VVVGTIQGRTYAFVGLERVGGVMVFDISDPRNATYVDYVNDRDGDAAGDDAAVGLGDMGA EGLAFVPAHESPSGSALLIVANEVSGSTTVYEVEPTKWK >gi|289557028|gb|ADCD01000075.1| GENE 27 29778 - 30326 319 182 aa, chain + ## HITS:1 COG:BH1243 KEGG:ns NR:ns ## COG: BH1243 COG1490 # Protein_GI_number: 15613806 # Func_class: J Translation, ribosomal structure and biogenesis # Function: D-Tyr-tRNAtyr deacylase # Organism: Bacillus halodurans # 33 173 1 145 146 137 50.0 1e-32 MSAGTVLIPTARLPGPCQRPRPGRGRSCEDGCMRAVCQRAQSASVTVDGEVVGSFAGEGL VILLGVSVTDTAAVAEQVARKVAGLRMLDGERSLTDAGAPALVVSQFTLYGDVRKGRRPS WTRSAKGEQAQPLYERFMAELESSGVRVERGVFGAMMDVSLTNSGPFTLIVDSDELAGPR HG >gi|289557028|gb|ADCD01000075.1| GENE 28 30466 - 32280 1578 604 aa, chain - ## HITS:1 COG:Cgl1597 KEGG:ns NR:ns ## COG: Cgl1597 COG0173 # Protein_GI_number: 19552847 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Aspartyl-tRNA synthetase # Organism: Corynebacterium glutamicum # 1 595 1 592 608 846 69.0 0 MLRTHSLGELNASLIGQTVTVTGWVARRRDHGGVAFVDLRDASGFAQVVVRDEADFDPLR NEWVLQVIGTVERRPEGNENPNLPSGEIELIAETVTVLNTAAALPFQVDEHVEVGEEARL RHRYLDLRRPQPSRIMRLRSEVNRTARELLHGEGFVEVETPTLTRSTPEGARDFLVPARL APGSWYALPQSPQLFKQLLQVGGIEKYYQIARCYRDEDFRADRQPEFTQLDIEASFVEQD DVIALGEKIVKALWALVGVDVPTPIRRMTYAEAMEKYGSDKPDLRFGLELTDLTEYFKDT PFRVFQNEYVGAVVMPGGASQARRTLDAWQEWAKQRGAKGLAYVLIQEDGELTGPVSKNI SEEEKAGLAAAVGANPGDCVFFAAGKPKESRALLGAARVEIGRRCGLFTDAGDGVAAKDA DWAFVWVVDAPMFEPAADAVASGDVAVGAGAWTAVHHAFTSPKPEFADTFDTDPGSALAY AYDIVCNGNEIGGGSIRIHRQDVQERVFEVMGLSPEEANEKFGFLLEGFKYGAPPHGGIA FGWDRVVALLAGTESIREVIAFPKTGNGYDPLTAAPAPITAQQRKEAGVDAQPEPTKAEA EPEA >gi|289557028|gb|ADCD01000075.1| GENE 29 32426 - 33718 1058 430 aa, chain + ## HITS:1 COG:MT2055 KEGG:ns NR:ns ## COG: MT2055 COG0531 # Protein_GI_number: 15841481 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Mycobacterium tuberculosis CDC1551 # 5 424 14 417 440 232 50.0 1e-60 MTAALQRRLTLLHAVAIGLGSMIGAGVFTAIGLAAALTGGHPGLLYAALAVAAVAALCNA LSTAQLATVHPESGGAYVYGRRQLHPGAGFVAGWGFVTGKTASVAAMAATLGLYLFPDDA AAARWTGVAAVVVLTGVAMAGVTRTAQATMAILVPVLAVLVLAIGAGLTREAPGGSAAAL GVDSPVQGVLMGAGVLFFAFAGYARVATMGEEVIDPARTIPRAILIALAVTVALYLLLAT ALISGLGTSGLARSPAPVRDLLETALGSGWGWVAVAGAALAAAGAMLNLLTGISRTALAM ARESDLPRPLARVHAGTGTPWTAQLTVAVVVILLLLTTDILTVVGFSSFGVLVYYAVANL SALTLRGDDDGRRPARPRPLRVPRAVNVLGLALCLLLAFSLPPMSVAAMAGVFLIGVGGR AFVRAGRRGG >gi|289557028|gb|ADCD01000075.1| GENE 30 33778 - 35154 1313 458 aa, chain - ## HITS:1 COG:all5012 KEGG:ns NR:ns ## COG: all5012 COG0124 # Protein_GI_number: 17232504 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Histidyl-tRNA synthetase # Organism: Nostoc sp. PCC 7120 # 8 441 13 452 462 293 40.0 6e-79 MSRKASLSGFHEWLPAERLVEQHVLDTLRRTFELHGFAGIETRAVETLGQLLRKGEVDKE VYAVSRLAEDEEVAAGRRDPRDPADPKRLALHFDLTVPFARYVVENAGHLAFPFRRYQMQ KVWRGERPQEGRAREFTQADIDVVGDGALSPRYDADVALVMAEALGALPIGDFLIRVNNR KLAEGFYRGIGLEDTAGVLRSIDKLEKVGPEEVARLLQEEVGASPEQAAQALALADIRTS DASFVERVRALGVTHELLEEGLTELADVVDTLHRGAPGRAVADLSIARGLDYYTGTVYET VLVGHEQLGSICSGGRYDALASKGNRVFPGVGLSIGVTRLVMRMLSQQMAVASRSVPTAV YVALTADEDWSEAQDVAALLRERGIPAEVAVSAEKFGKQIKYADRRGIPFVWFMGRDDAG ARVHEVKDIRSGEQHAADPADWTPPAEDLLPQVARAQD >gi|289557028|gb|ADCD01000075.1| GENE 31 35341 - 36825 1233 494 aa, chain + ## HITS:1 COG:no KEGG:Mlut_12820 NR:ns ## KEGG: Mlut_12820 # Name: not_defined # Def: protein of unknown function (DUF349) # Organism: M.luteus # Pathway: not_defined # 1 494 5 512 512 656 93.0 0 MQPDDQQSPTTEATPAPAEAAEARPVPDAPAHGDSAQPAEAPAAPSPAAMKKASPAAVRP ATPAAPAPVVAPTVPPTPVEEAAAFARVSEDGHVTLLDGQEEHAVGQVPDASTEDALAYF VRKYDDVRAQMALFEQRIAAGAPSSELGRALGQMTTAVNERHMVGDMDALRTRLAALETL LGDYRAAEQEARQAAQAEQLATREAIVAEAETFAQTPAERMPWKTASQRMTELFEEWKAA QKAGPRLAKSVEDDLWKRFRGARTTFDKTRRAHFSRLDAASAEAKQVKERLIARAEELST STDWGVTAGKYRDLMDEWKRAPRASRKEDDALWARFRAAQDVFFAARKAANQEIDREYGA NLKVKEQILADGQKLLPFTDVKAGRRALNELRGRWEDAGRVPRGDVRRMEEGFRKLEDAL KQAENEHWRRTDPETKARTNSALTQLEETIAGLEADLARAQAQGDQRAVTKAQEALDARL QWKQALEASASELR >gi|289557028|gb|ADCD01000075.1| GENE 32 36911 - 37528 403 205 aa, chain + ## HITS:1 COG:no KEGG:Mlut_12830 NR:ns ## KEGG: Mlut_12830 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 205 1 205 205 256 96.0 4e-67 MTTVTIEETAPTGALVLAGDPFTEPELQALGARGAVRPLLPGVWARPDAADNPAVRAAAR WTLGGPLLAAGWTAIGPSAAWILAGGAAPGRLHAAVPHFHRRPAGGGLLPWTLTESDVAA DATGVAPAEQDVLRFGPVRVTTPARTVEDLLLSADPDASRRAAAVIGAHGAAGLRERLAR RTRRAGVVAARRRLGALLAALDVPD >gi|289557028|gb|ADCD01000075.1| GENE 33 37540 - 39819 1928 759 aa, chain - ## HITS:1 COG:MT2660 KEGG:ns NR:ns ## COG: MT2660 COG0317 # Protein_GI_number: 15842122 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Guanosine polyphosphate pyrophosphohydrolases/synthetases # Organism: Mycobacterium tuberculosis CDC1551 # 20 758 56 788 793 814 56.0 0 MSEQDPTPVPVRPRSRIARLTGRHATEYSPLLEPLMRTVRQRATKTELADIVRAFEVARA AHEGQMRRSGDPYITHPVAVATILAEIGVTGPTLLAALLHDTVEDTDYSLERLRADFGSD VALLVDGVTKLDKVTYGAAAQAETVRKMVIAMAQDVNVLLIKLADRLHNARTWRYVSPES SARKAQETLDIYAPLAHRLGMNTVKWELEDLSFAALKPKMYAEIVRLVGERNPEREKHIA ALRTVIEEHLREHRIRATVTGRPKHYYSIYQKMVTRGKDFDDIHDLTGIRVLVDSVRDCY AVLGVIHARWNPVPGRFKDYIAVPKLNMYRSLHTTVMVPGGKPVEIQIRTQEMHRQAEYG VAAHWRYKAQAAGQGPVQATPAWLRSVMDWQADTRDPDEFLASLRTQIGADEVYVFTPKG EIRTLPAGSTPVDFAYAIHTDVGHRTIGARVNGKLVPLSTPLSHGDTVEVFTSRAEDAGP SRDWLGFVVSPRARSKIRHHFATQRRGEQADRGRESLTRQLRKAGMAVQHVLGGEELVQV ATDLGYADLDGLFVALGDGHVSAQSVQERVAERLAPPTPTQAEPEGELTVGEVDLQELVP AQARRAPARATNDAGVLVDGDGGVMAKLARCCNPVPPDAIDGFVTRGSGVSVHRVDCPNL ATLLAQEPERRTPVSWAPSRDTVYLVEIQIEALDRKSLLSDVTRVLSENHVNILSASVNT TRDRVAMSRFVFEMGDPRFLGHVIDAVRRIDGVFDVHRT >gi|289557028|gb|ADCD01000075.1| GENE 34 39956 - 40996 852 346 aa, chain - ## HITS:1 COG:MT2663 KEGG:ns NR:ns ## COG: MT2663 COG0341 # Protein_GI_number: 15842125 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecF # Organism: Mycobacterium tuberculosis CDC1551 # 11 329 51 374 442 197 38.0 3e-50 MNRFADWGNALYSGRISYPFIQRWRRWFALAALLLVLAGGLTALRGGFNLGIEFRGGSEF TVSQTASTDVAAGERAVTDVLADGHATVTNVAPGTVRVQTEQLDDAQTRAVAANLQEAYG VGQDQVTSTFVGPTWGDAVSQQALIGLVIFVVLVTLFMAVYFRTWKMSLAAVLGMLYVVA LTAGIYGATGFEITPSAIIGFLTILSYALYDTVVVFDKIRENTIGAEEDPERSFVENVNL AVNQTLVRSITTSVVGILPVGSILFIGAGLLGAGTLRDIALALFVGIIVGTLSTLFLQAP LYALLRRNDADVRDHDARAAARAARERGSDTVTDPDVAPWDDGARL >gi|289557028|gb|ADCD01000075.1| GENE 35 40993 - 42819 1449 608 aa, chain - ## HITS:1 COG:ML0487 KEGG:ns NR:ns ## COG: ML0487 COG0342 # Protein_GI_number: 15827164 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecD # Organism: Mycobacterium leprae # 16 504 39 567 597 224 36.0 3e-58 MAKRTPTGSAGRTLAWLAALLVVLAAILGGGVASGAASWAPKLALDLEGGTQMVLAPETS TGESVTPEQLDQAVEIIRQRVDGSGVAEAEVATQGSQNVVVSLPGVPDEETRRLIQASAD MQFRPVLQSGPGEATPEDQRLPEDQLPKPDGEPADAYDPNWVTPALLAEFQAKDCTAPRD PAAPPPPSDRAIVACQPPEELADGVVTPAQKYILGPVVIPGTQIKGASNGMAQAQSGVST NQWVVNIDFDEEGAKTFTEVTQKLTPYPEGDPRKQFAILLDGDVISAPQSNVVITNGSAQ ISGPTLNEQTTAQLAEQLNYGSLPISFSIESEQQISATLGRDQLFWGLIAGLIGLGLVAV YQFFQYRALGLLTFASIIVAGVLTWLAIAILGWTDNYRLSLAGIAGLIVAIGLTADSFIV YFERIKDELRAGHTVPVAVHEGWKRAQRTITASKAVNLLAAVVLYFVAVGNVRGFAFTLG LTAIADLIVVFMFTHPLMVLLAQTRFVGEGHPMSGLDPSLLGGPSLYQGAGRVREPAPAP RTGVPAEDSDEPADADDAAAAVAPRPLAATGAPRAGSSARGGRRSRTAPPMTIAERRRAE RRRQEEDQ >gi|289557028|gb|ADCD01000075.1| GENE 36 42890 - 43357 436 155 aa, chain - ## HITS:1 COG:no KEGG:Mlut_12870 NR:ns ## KEGG: Mlut_12870 # Name: not_defined # Def: preprotein translocase, YajC subunit # Organism: M.luteus # Pathway: Protein export [PATH:mlu03060]; Bacterial secretion system [PATH:mlu03070] # 1 155 1 152 152 222 92.0 3e-57 MPVATAATLPVIAQQAQGGGGSLLMLIAFALLAVMLFLSFRKGKKMQQQQAQMRSTLAPG VEVMTGAGIFGTVVAVDTEGQRVTLETAPGTRMDVHLQGITTVVEPETAAASEAPAGVDP AAAPTADPSRLDDAPGTEYRADDAADPRPRRDDLA >gi|289557028|gb|ADCD01000075.1| GENE 37 43417 - 44439 898 340 aa, chain - ## HITS:1 COG:MT2669 KEGG:ns NR:ns ## COG: MT2669 COG2255 # Protein_GI_number: 15842132 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, helicase subunit # Organism: Mycobacterium tuberculosis CDC1551 # 1 340 1 340 344 385 64.0 1e-107 MSAESSPLSAAAVDPEERRLEAALRPRHLDEFVGQMRVREQLDLMLASARLRDRAADHVL LSGPPGLGKTTLAMIVAAEMNAPLRLSSGPAIQHAGDLAAILSSLTEGEVLFLDEIHRMS RPAEEMLYMAMEDFRVDIVVGKGAGATSIPLELPPFTLVGATTRAGLLPGPLRDRFGFTG HLDFYTEEELERVLRRSALLLDMRLATEGYRQIARRSRGTPRIANRLLRRVRDWALVKGL AEVGAHDAAAALDMYDVDGRGLDRLDRSVLTALCTTFGGGPVGLSTLATAVGEEAETVET VAEPFLIREGMVARTPRGRVALPGAWEHLGIAAPEATPGP >gi|289557028|gb|ADCD01000075.1| GENE 38 44436 - 45080 547 214 aa, chain - ## HITS:1 COG:Cgl1621 KEGG:ns NR:ns ## COG: Cgl1621 COG0632 # Protein_GI_number: 19552871 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, DNA-binding subunit # Organism: Corynebacterium glutamicum # 1 201 1 200 206 141 44.0 1e-33 MIASLSGTVEHVALDRAVIAVGGLGVQFSATPQTLATLHEGRPGAVQTHLVVKEDALTLY GFADRDEREVFEVLITANGVGPRLALAILSVHHPEAVRRAVTEEDEKTLTRVPGIGPKMA RKIIVELSGRLAPTGEPVPEAEAEVSDEPAVETVWHADVVQAMAGLGWSEKEALKAVEAT VAARPELDEGRDVAALLRATLRDVGMAGAVRGGR >gi|289557028|gb|ADCD01000075.1| GENE 39 45161 - 45604 335 147 aa, chain - ## HITS:1 COG:Cgl1622 KEGG:ns NR:ns ## COG: Cgl1622 COG0817 # Protein_GI_number: 19552872 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, endonuclease subunit # Organism: Corynebacterium glutamicum # 1 96 67 162 213 78 55.0 5e-15 MFANTNTPTVLGTAQAAGVAIAAAARAGVPVGLHTPSEVKAAVTGHGDAGKEQVTTMVTR ILRLDAPPRPADAADALALAIAHGWRGTALGAAAGQTGLDTADLASRAGRSQFAAKAPAR ARPRGQLTAAQRAWLDAERSAGGGRRR >gi|289557028|gb|ADCD01000075.1| GENE 40 45844 - 46605 756 253 aa, chain - ## HITS:1 COG:MT2678 KEGG:ns NR:ns ## COG: MT2678 COG0217 # Protein_GI_number: 15842143 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Mycobacterium tuberculosis CDC1551 # 1 253 1 251 251 273 62.0 2e-73 MSGHSKWATTKHKKAVIDARRAKAFAKYIKNIEVAARAGGPDVAGNPALDLAVSKAKKAS VPNDNIDRAVKRGAGLTGEVIDYAEIMYEVRGPQGSALLVECLTDNKNRAAAEVRAAVTR NGGTMADSGSVSFLFERKGLVRLPAEGNTEDGLLEAVLEGGADAEEVVLSGESFEILSDP SDLQSVAKALDEAGVEYESDELEFVPTMKVDLDASGARTFLRLTDALEDLDDVQNVFSNV DIAPEVLAELDED >gi|289557028|gb|ADCD01000075.1| GENE 41 46705 - 48798 1817 697 aa, chain + ## HITS:1 COG:XF1944 KEGG:ns NR:ns ## COG: XF1944 COG0339 # Protein_GI_number: 15838538 # Func_class: E Amino acid transport and metabolism # Function: Zn-dependent oligopeptidases # Organism: Xylella fastidiosa 9a5c # 14 692 36 715 716 504 41.0 1e-142 MTHTSASSVLPADHPLATPSDLPYGLPDFSAVSDAQLAEAVRAGMATQRAEVDQILGAAT APTFENTVRSLELSGQLLRRSAAMFFTLVGSDGTDARQALAEELSPELAAHEDAILLDPR LAARVAAIDDGGLTGEDARLLETLRLRLSLAGADLDEAAREELRGINTELASLSAAYTRR LVADTAARAVLVTDRERLAGLSEDDLAAAAGAAAEAGHGDGDAAAGPWLLTLSLFTSQPW LASLQDEGMRREVFEGSTGRGGSGEHETLTTAMAMVRLRLRKARLLGAESWAEQALKDRA APSTAAVEDLLAAMAPRAMANARADAATAAAHAGRAGAEVAPWDWPALSAAYAREEFAVD ADALRPYFELDRVLTEGVFAAATALYGLTFAERPELARHLYRPGIRVFEVTGEDGAGVGL FVADLFARPTKSGGAWMHTVRDRADALGERPVVFTTMNVPAPAAGRPALLTLDETTTLFH EFGHALHGLLARGEYASLTGTNVPRDVVEFPSQVNEVWLREPSLLAAYARHVETGEPLPA GTLERLEAADLWGEGHRTVEYLGAALVDWAWHSLTEETVDAATADPAAFERRVLTEAGID PDLVPPRYGTGYFKHIFGGGYAAGYYSYVWAEVLDADAVEWFREHGGMARENGRRFADEL LSRGDTRDLLESYRAFRGRDAELEPLLRRRGLADAAA >gi|289557028|gb|ADCD01000075.1| GENE 42 48805 - 52890 1956 1361 aa, chain - ## HITS:1 COG:DR2478 KEGG:ns NR:ns ## COG: DR2478 COG1073 # Protein_GI_number: 15807464 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Deinococcus radiodurans # 1082 1351 142 401 407 136 34.0 4e-31 MRVTLPAGSLRVDAARRADPAGRDGGSGVGGIGVQQRDRDDRADVLHLPRARAPLRQERV HGLGGDRGGRGPADPPERVRGEEVLGGHPQLFGPSGDAGLGRAQAAVRHRVPVLPGPGWG RAVPGADLRRGGVAPLGVLDAGPDRGDPARRLAARGAAVEAGGLAQGGDGARQGGRGGDD RPVRDEPAGGDVAVAGEVLAGLPQALEDRALHGAAQRLGARGAAPGVLLRRGRRGRAHVL ELLLGPRELAVGLEARDQGLTQRDEQLDVERRVGEHRLGQRTHRPVGGRVLLGEGDPQQL LQDRGQADAWQACHPGRELGVEQPVGAQSLLGQAGQVLAGRVQDPLDAREGLLQRGQPVE GLGVDEPDAGALALELDEHGPLAVPDPGGALRVDGDGPGPRGERRGAGLQARAGVGEPGD SAGRCGDQPRGRVRGGRLGGVGHAAPVRGGRGGAGARCAGGAGSGAGRGDVRGVLRRQAG ERADHVRPRLQMRAEVPRGRGPRGAQLDVGGVRGCTERPEALRDAARRGAAGVGVLGVTA LERLHEPRPRDGAGQLVQRDVRFQARPDPGHRPESARPPGVRGRVVQEDEPPRGQHAAGR TRPAAHVGGEGDGEGRLPLGRRDLPEPHLGPRPRIAQVRQGTPEHPRRHGRLDRPGGGGE ATGPDHAHVRQPRPRGPPGRGGAPWTPRRSRTGSARPVRGRRVVGGGQAQRDRVDAVAQV RGGVIALAREDVTHVGAARRAPHLDPLHAQGGVLQVFHPVLRERREERGPAAVRVELLVR AEQLGPARPARVHALHVRVPVLAREGPLRAGPAQHLELLGREPSGPLLVRQAGAARGGQG LLGSRGVPRGVGGGTVMEGVVSLGHARCNGPQRRRVPGRRRIGGRARPWRTMARMAAPPR RPRSRPHPADLPPALAAVVVASRRGGGRDSRVRRAGRLVRRGVTGSVRGGVAVASPAARW APPVLSVAAASAFVLAGASSALAGVFARTVVTPVRRHAESTPILAVVDTPAGQDVILQAD EYTTVPGQYSLTFDDGAGCARIGEITSFDPRDGTVQRGVEEVFSGDLTTATRGRFTGFVY PTPADAGLDAEDVQVPVPGGHARAWRIAPGPSEDGQPRPAEGLWAVMVHGRGARRNEGIR AVPTARRLGMTSLLISYRNDGDAPDAADARYGLGTTEWEDVEAAIRYALDHGARDVVLFG WSMGGAVVLQTVDRSTLAPRVRGVVLTGPVVDWVDVLRHQARLNRIPEAVGLLGQWLLAN RAGRFITGLAAPVDLKALDWVTRADHVRVPTLILHSEDDEYVPVGPSQDLAERNPDLVRF VRFHQARHTREQNVDPRKWDTAVRGWLRAVLSAPRPGDRRR >gi|289557028|gb|ADCD01000075.1| GENE 43 52889 - 55060 1930 723 aa, chain + ## HITS:1 COG:fadB_2 KEGG:ns NR:ns ## COG: fadB_2 COG1250 # Protein_GI_number: 16131692 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxyacyl-CoA dehydrogenase # Organism: Escherichia coli K12 # 369 713 31 379 423 180 32.0 1e-44 MTSASLASFDHLPALAPDEVVTAVTVTDHALPEGAGTLALLTLDNGQGPRRPATLGPATL LGLGRVLDEQAARAAAGEIQALAVTGVEGTFAAGADLSLIAGITGDVGRDLALLGHAVYD RLAALEIPTVALVNGLALGGGLELALAAGHRVVAADAKGFGLPEVRLGLIPGWSGVWRVP HLIGPEAAVDVVLKNPLDDNRMLDARAAHGLGLMDRIVEGDLLDAGLELAAALVTGDESV AAELAAHRDRDVSDAAWDRALEALERLQAARPGRHLPARRHLEDLFTGARTRTRAESAQA EADALGTLLHSPEFRRTVYAFLGLVQGRAKRPAGDPGRELAREVRKVGIVGAGLMAGQLA LVFARHLRVPVVMTDVDAERVERGLAGVRAQVEKMVSRGRLSAEDGQALAGLITADTDKA VYADADVVIEAVFEELEVKRTVFRELEGIVREDAILMTNTSSLSVAAMAEVLERPERLVG FHFFNPVAVMPLVEIVRTEATTDEVVATAFELTRRLRKTGVLVHDATAFVVNRVLLRMMG EVQNSFDEGTDAHEADHALDPLALPMTPFTLLAMVGLPVAQHVSESLSASFGAERFPVSA NLQRLIDAGKTAIWAKDVRPDRRDEEAAGATGEQIPEATAALLEQGSTPQAPEELLRRVE DALAEEIGLLLDEGVVAAPEDVDLCMILGAGWPLHLGGITPYLDDCGAAERVNGRRFHPA AQA >gi|289557028|gb|ADCD01000075.1| GENE 44 55102 - 55824 538 240 aa, chain - ## HITS:1 COG:no KEGG:Mlut_12980 NR:ns ## KEGG: Mlut_12980 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 23 240 1 218 218 353 96.0 3e-96 MRPGPTGARIGGDGPPSPRSTAVTDPAPRPTGAARFDLTPFERWEAVTLDDVHVGFLHRV LEDGVLTTRMGFAPTPAQRAARGGLPERYLAQTQVGFTPDGDGWAWTTHEDSAGAQRVRI DRERAGIDAAVLPSYAEYLLLARVAAEGPLAVDRLEEASPLQGGLRVPRAELRPADAGGS DVRVAVVADGVELGAHLVREGAVVASDWGGGTASTPVADRAAATAGLDAHVATFAGLPIA >gi|289557028|gb|ADCD01000075.1| GENE 45 55854 - 56366 443 170 aa, chain + ## HITS:1 COG:no KEGG:Mlut_12990 NR:ns ## KEGG: Mlut_12990 # Name: not_defined # Def: ferredoxin subunit of nitrite reductase and ring-hydroxylating dioxygenase # Organism: M.luteus # Pathway: not_defined # 1 170 1 170 170 275 98.0 4e-73 MTTQDSPLNPNSSRPGCCGDHARPDTSRRTVLGRGAAVAAAGAGALALAGCTDRLREEDT AQDHYTGSDAVDALPAAELPVGASREVQVQGRTLMMHRVDETTVTAFTNVCTHQGCLLQV VDRQEGPAYACPCHGSHFDVTSGKPFGGPARKALMDYDAAVVDDRIVVKL >gi|289557028|gb|ADCD01000075.1| GENE 46 56374 - 56712 291 112 aa, chain - ## HITS:1 COG:no KEGG:Mlut_13000 NR:ns ## KEGG: Mlut_13000 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 112 1 112 112 154 93.0 1e-36 MVAALSGAAAAAAANPLVPTPGEAALGWTVSVVAGALWVAGFVSLGRSPLDARARLPWVG VMLLLPVLGALIWFWWRHRYYPARRREQPGWDPNDRVAVVVPPRRRYGAPED >gi|289557028|gb|ADCD01000075.1| GENE 47 56712 - 57686 792 324 aa, chain - ## HITS:1 COG:AGl29 KEGG:ns NR:ns ## COG: AGl29 COG0667 # Protein_GI_number: 15890114 # Func_class: C Energy production and conversion # Function: Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 1 318 1 323 353 212 42.0 7e-55 MRHTRLGRSGLTVSVIGLGCNNLGRPGTATLEQAGTDAVVHAALDAGITFFDVADIYGAE PGLSEERLGRALGARRDEVVIGTKFGMDMGGVAGDDGGARGSRRYIVRAVEDSLRRLGTD WIDLYQFHTPDPATPIEETLRALDDLVRAGKVRYVGHSNRAGWQIAQAEYVARELGVERF VSAQNHYNLLDRRAELEVVPAATEFGLGVLPYFPLANGLLTGKYSQGDAPEGSRLSHVRQ HMVADADLEQLAAFGRFARERGITEVQAAIGWLAAQGPVSSVIAGATRAAQVVENAAAAD WLATAEDLAELDALFPGPEKVALF >gi|289557028|gb|ADCD01000075.1| GENE 48 57690 - 58208 452 172 aa, chain - ## HITS:1 COG:no KEGG:Mlut_13020 NR:ns ## KEGG: Mlut_13020 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 172 1 172 172 278 97.0 7e-74 MSIVRLYRATVGDDGARLFEYREAWADAEAGEFVVHHGRVGQPGTVGEQPLADPAEGDQL LAAFVAQGAEEGFAEADPATFAVLPVAYRLRGREATAIERRTVERLRVEVTHQLAWRGLG EVEDVVDEAGALVLRVRTPHARKAAAEIPAAAKRADGVQPNKVDVRTAEQEG >gi|289557028|gb|ADCD01000075.1| GENE 49 58205 - 60220 1569 671 aa, chain - ## HITS:1 COG:ML1038 KEGG:ns NR:ns ## COG: ML1038 COG1154 # Protein_GI_number: 15827503 # Func_class: H Coenzyme transport and metabolism; I Lipid transport and metabolism # Function: Deoxyxylulose-5-phosphate synthase # Organism: Mycobacterium leprae # 13 649 1 622 643 670 57.0 0 MEHLPPTSPGAPLLPQIARPADLSALTEDQLTALAAEIRAYLIAHVSKTGGHLGPNLGVV ELTLAVHRVFESPKDAVIFDTGHQSYVHKLLTGRQDFTTLRQEGGLSGYGDRTESEHDVV ESSHASSSLSWADGIARAWAQTGQGDRTVVAVIGDGALTGGMAWEAVNNIAAGRDRRVVI VVNDNGRSYAPTVGGVAEHLGGLRRGVLDKVRTHHRYEQTLDYLKRRLQEAGLAGELVYR PLHAAKKGLKDLWAPQGLFEDLGMKYIGPVDGHDLTAMEEALEDARAYGGPVIVHAMTEK GHGYAPAVAHEADQFHAIGVIDPSTGEPITSSTAQSWTSVFGEEMVAIADERPDVVAITA AMQNPVGLAPMALAHPDRVFDVGIAEQHAVTSAAGMAFGGLHPVVAVYATFLNRAYDQVL MDVGLHRAGVTFVLDRAGVTGPDGPSHHGMWDLALLQSVPGLRIAAPRDADTLREELREA VAVEDAPTVVRFAKGSVGEPVRALERLSDGTDVLARRGEAGGRDGAERDVLIVAVGAMAE LGLDVAERLERHGISATVIDPRWVLPVARSVIDTAARHRIVVCLEDGVRAGGVGSRIRQE MRAAGVDTALNEVGLPVEFLAHGSREQVLARVGLTAQRITQDTVAQVLGAKVPYARPVPE DAAAPHHQEQA >gi|289557028|gb|ADCD01000075.1| GENE 50 60487 - 61074 441 195 aa, chain + ## HITS:1 COG:no KEGG:Ksed_23430 NR:ns ## KEGG: Ksed_23430 # Name: not_defined # Def: protein of unknown function (DUF1541) # Organism: K.sedentarius # Pathway: not_defined # 1 195 1 192 192 218 64.0 7e-56 MRKRLRTIVTAGVLGGALVFTGCSTGGDQDQATPSTTSQHEGHGSSSDSGGMEHPMDGGP APEGIETAASPTYPVGTEVTLTADHMEGMDGANATIAGAYDTYTYAVNFTPSTGGEPVKD HKWVVQQEIKDAGEERLADGTEVTLEAEHMEGMKGAKATIASSTEETVYMVDYESDGMTM TNHKWVVESEIKPAS >gi|289557028|gb|ADCD01000075.1| GENE 51 61164 - 63299 1608 711 aa, chain + ## HITS:1 COG:Cgl2900 KEGG:ns NR:ns ## COG: Cgl2900 COG2217 # Protein_GI_number: 19554150 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Corynebacterium glutamicum # 5 700 3 718 739 696 60.0 0 MTDPTTHHHDHDGVATTESGHRDDSRAENEDHTMEHGDHAGHGHHGGGHAGHGDHVGQFR RLFWINLIIAIPVVAFSPMFAMLLGYSVPSWAGWVAAVLGSVMYAWGGTPFLTGAVSELK SRQPGMMLLIALGITVAFLASWAATVGLVHPELEFWWELALLIVIMLLGHWIEMRSLAQT TSALDSLAALLPDEAERIEGDDVVKVDPAELRVGDVVIVRPGGSVPADGTIVDGRADMDE SMITGESHPVARGEGENVTAGTVATDSGLRVEITATGDDTALAGINRLVAEAQGSSSRAQ RIADRAAALLFWFALGAALITAVVWTLYGLPDDAVIRTITVLVIACPHALGLAIPLVVSI ATERAARGGVLIKDRLALESMRQVDAVLFDKTGTLTKGEPTVTGVEPTGGLNAEQVLALA ASAEADSEHPLARSIVTAAKEKSLAIEPASGFTSSPAVGVTATVADHEIRVGGPRLLEET GQDEIGVADEWRAEGAIILHVLRDGKVIGGLKLADEIRPESRDAVDALHQLGVEVVMITG DAEAVANEVGRELGIDRVFAGVRPEDKSAKVDQLQKEGKKVAMVGDGVNDAPALAQADVG IAIGAGTDVAIASAGVILASSDPRSVLSVIQLSRAAYRKMKQNLWWAAGYNVLSVPLAAG VLAPVGFVMPMSVGAILMSISTVVVALNAQLLRRIDLAPAASTRSVLEHQK >gi|289557028|gb|ADCD01000075.1| GENE 52 63404 - 63646 174 80 aa, chain + ## HITS:1 COG:Cgl0381 KEGG:ns NR:ns ## COG: Cgl0381 COG1937 # Protein_GI_number: 19551631 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Corynebacterium glutamicum # 1 80 22 100 100 85 60.0 1e-17 MKRVEGQARGITTMIDDEKYCIDILTQVSALTRALQGVATGLLDDHLKHCVLDAAKKGDE DAAIAKIQEASDAINRLVRS >gi|289557028|gb|ADCD01000075.1| GENE 53 63828 - 64451 472 207 aa, chain + ## HITS:1 COG:no KEGG:Ksed_23390 NR:ns ## KEGG: Ksed_23390 # Name: not_defined # Def: hypothetical protein # Organism: K.sedentarius # Pathway: not_defined # 9 206 4 204 205 179 48.0 6e-44 MPLAIVAPIQSSRIRLRIWAAFTGLATSAVLLLSGCADAEPSADPGSDRSLVVEHDLDGL NAREIIERLDSTKMTDRSSEFIASIEPDQLVLTDDQNNQTTLPMPEDEFYVSIAPYRSQT HECYFHSLTTCSGELANTDVHVTVVEATSGETILDETLTTYDNGFVGVWLPRGIDATLTV SAEGRTAEKAISTRPDDPTCLTGLQLA >gi|289557028|gb|ADCD01000075.1| GENE 54 64829 - 65284 -27 151 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|281415340|ref|ZP_06247082.1| ## NR: gi|281415340|ref|ZP_06247082.1| transposase [Micrococcus luteus NCTC 2665] # 51 149 59 156 297 70 46.0 2e-11 MKPGGGGRHPRRHVPVPDALPRPHRPAGPAVRRCPHDARRHHPPVQVHRSPGREVWAWHR RMTEQGTWDTVPATLTPCSGGRRPDRWVGLGGLHDRPRTSARHAHRPAHRGLDRTTGIHM KNPADHGIGRPWGGLSTKTHQLIDGAGLPRS Prediction of potential genes in microbial genomes Time: Thu May 26 07:51:39 2011 Seq name: gi|289556972|gb|ADCD01000076.1| Micrococcus luteus SK58 ctg1119142780324, whole genome shotgun sequence Length of sequence - 38066 bp Number of predicted genes - 50, with homology - 47 Number of transcription units - 19, operones - 12 average op.length - 3.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 787 563 ## COG1946 Acyl-CoA thioesterase 2 2 Op 1 3/0.000 - CDS 976 - 2697 1857 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains 3 2 Op 2 . - CDS 2757 - 3308 465 ## COG0629 Single-stranded DNA-binding protein - Prom 3525 - 3584 78.9 + TRNA 3508 - 3584 80.9 # Arg TCT 0 0 + Prom 3510 - 3569 79.8 4 3 Tu 1 . + CDS 3697 - 5142 1214 ## COG3463 Predicted membrane protein 5 4 Tu 1 . - CDS 5179 - 6408 1015 ## COG5650 Predicted integral membrane protein 6 5 Op 1 . - CDS 6561 - 8138 1067 ## Mlut_09700 hypothetical protein 7 5 Op 2 . - CDS 8285 - 10768 1741 ## Mlut_09690 hypothetical protein - Prom 10788 - 10847 77.5 + TRNA 10770 - 10845 77.7 # His GTG 0 0 8 6 Tu 1 . + CDS 11169 - 12155 778 ## COG0582 Integrase + Term 12172 - 12218 12.5 9 7 Op 1 . - CDS 12273 - 12815 193 ## gi|289706259|ref|ZP_06502621.1| hypothetical protein HMPREF0569_1564 10 7 Op 2 . - CDS 12856 - 13137 132 ## Mlut_09650 hypothetical protein 11 7 Op 3 . - CDS 13168 - 13581 252 ## Mlut_09630 protein of unknown function (DUF955) 12 8 Tu 1 . + CDS 13719 - 14474 567 ## COG4422 Bacteriophage protein gp37 13 9 Op 1 . - CDS 14446 - 15654 653 ## Mlut_09610 hypothetical protein 14 9 Op 2 . - CDS 15651 - 16259 317 ## Mlut_09600 hypothetical protein 15 10 Op 1 . + CDS 16368 - 16778 202 ## gi|289706265|ref|ZP_06502627.1| conserved domain protein 16 10 Op 2 . + CDS 16775 - 17560 609 ## COG3617 Prophage antirepressor 17 10 Op 3 . + CDS 17557 - 17808 170 ## gi|289706267|ref|ZP_06502629.1| hypothetical protein HMPREF0569_1572 18 10 Op 4 . + CDS 17805 - 18074 279 ## gi|289706268|ref|ZP_06502630.1| DNA binding domain, excisionase family 19 10 Op 5 . + CDS 18131 - 18544 280 ## gi|289706269|ref|ZP_06502631.1| hypothetical protein HMPREF0569_1574 20 11 Op 1 . + CDS 18747 - 19004 109 ## 21 11 Op 2 . + CDS 19054 - 19311 159 ## gi|289706271|ref|ZP_06502633.1| hypothetical protein HMPREF0569_1576 22 11 Op 3 . + CDS 19311 - 19619 131 ## gi|289706272|ref|ZP_06502634.1| transcription factor WhiB 23 12 Op 1 . + CDS 19825 - 20157 112 ## gi|289706274|ref|ZP_06502636.1| hypothetical protein HMPREF0569_1579 24 12 Op 2 . + CDS 20226 - 20750 516 ## gi|289706275|ref|ZP_06502637.1| hypothetical protein HMPREF0569_1580 25 12 Op 3 . + CDS 20747 - 21340 365 ## gi|289706276|ref|ZP_06502638.1| hypothetical protein HMPREF0569_1581 26 12 Op 4 . + CDS 21337 - 21702 248 ## gi|289706277|ref|ZP_06502639.1| conserved domain protein 27 12 Op 5 . + CDS 21720 - 22586 735 ## gi|289706278|ref|ZP_06502640.1| hypothetical protein HMPREF0569_1583 + Term 22611 - 22640 0.3 28 13 Op 1 . + CDS 22746 - 23084 221 ## gi|289706280|ref|ZP_06502642.1| conserved domain protein 29 13 Op 2 . + CDS 23077 - 23322 136 ## 30 13 Op 3 . + CDS 23315 - 23743 279 ## gi|289706282|ref|ZP_06502644.1| hypothetical protein HMPREF0569_1587 31 13 Op 4 . + CDS 23743 - 25077 447 ## CE0837 hypothetical protein 32 13 Op 5 . + CDS 24797 - 25387 206 ## Xcel_0562 VRR-NUC domain protein 33 13 Op 6 . + CDS 25399 - 26097 261 ## gi|289706285|ref|ZP_06502647.1| hypothetical protein HMPREF0569_1590 + Term 26162 - 26199 8.4 34 14 Tu 1 . + CDS 26334 - 26681 187 ## Blon_1122 hypothetical protein 35 15 Op 1 . + CDS 27016 - 27390 248 ## gi|289706288|ref|ZP_06502650.1| hypothetical protein HMPREF0569_1593 36 15 Op 2 . + CDS 27420 - 28022 573 ## gi|289706289|ref|ZP_06502651.1| phage terminase, small subunit, P27 family 37 16 Op 1 . + CDS 28125 - 29795 1331 ## COG4626 Phage terminase-like protein, large subunit 38 16 Op 2 . + CDS 29815 - 31254 1030 ## Amir_5621 protein of unknown function DUF1483 39 16 Op 3 . + CDS 31238 - 32563 959 ## SCAB_61091 hypothetical protein 40 16 Op 4 . + CDS 32623 - 33285 655 ## gi|289705804|ref|ZP_06502186.1| conserved hypothetical protein 41 16 Op 5 . + CDS 33358 - 33747 402 ## nfa15270 hypothetical protein 42 16 Op 6 . + CDS 33766 - 34707 351 ## MMAR_3896 phage structural protein 43 17 Op 1 . + CDS 34820 - 35263 441 ## gi|289705807|ref|ZP_06502189.1| hypothetical protein HMPREF0569_0492 44 17 Op 2 . + CDS 35283 - 35702 214 ## gi|289705808|ref|ZP_06502190.1| hypothetical protein HMPREF0569_0493 45 17 Op 3 . + CDS 35702 - 36127 197 ## gi|289705809|ref|ZP_06502191.1| conserved domain protein 46 17 Op 4 . + CDS 36124 - 36504 404 ## gi|289705810|ref|ZP_06502192.1| hypothetical protein HMPREF0569_0495 47 17 Op 5 . + CDS 36582 - 36884 206 ## gi|289705811|ref|ZP_06502193.1| conserved domain protein 48 18 Tu 1 . - CDS 36702 - 37199 134 ## 49 19 Op 1 . + CDS 37156 - 37668 405 ## Blon_1111 hypothetical protein 50 19 Op 2 . + CDS 37745 - 38066 335 ## gi|289705814|ref|ZP_06502196.1| hypothetical protein HMPREF0569_0499 Predicted protein(s) >gi|289556972|gb|ADCD01000076.1| GENE 1 2 - 787 563 261 aa, chain + ## HITS:1 COG:BMEI0166 KEGG:ns NR:ns ## COG: BMEI0166 COG1946 # Protein_GI_number: 17986450 # Func_class: I Lipid transport and metabolism # Function: Acyl-CoA thioesterase # Organism: Brucella melitensis # 3 233 65 297 300 205 49.0 6e-53 GARPAHSLHGYFIRPGDALQPITFTVETLRDGRSFSVRRVLASQNEKAILALTCSFQEPA GSPLDHQVAMPEGVPRPEDLPTTADVLGGINHPVAQEWAWARPFDIRHVTPAIYVDPAAE TENRNMVWMKTFTPLADDPALHRAALTYASDYTLLEPILRQHGVAWIQPGMSVASLDHAM WFHRPARVDQWLLYVQDSPSAQGARGLGTGTVFTEDGTLVASVAQEGMVRLPEGAAARRA RVRGTAQRMALRTVLRRSWRR >gi|289556972|gb|ADCD01000076.1| GENE 2 976 - 2697 1857 573 aa, chain - ## HITS:1 COG:MT2552 KEGG:ns NR:ns ## COG: MT2552 COG0488 # Protein_GI_number: 15842003 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Mycobacterium tuberculosis CDC1551 # 14 572 1 557 558 842 77.0 0 MSGIPRPPTSLGRMAEFIYTMVKARKKVGDKLILDDVTMSFYPGAKIGMVGPNGAGKSTI LKIMAGLDEPSNGEARLSPGYSVGILMQEPKLDESKTVLENVQEGVGEIYGKIQRYNQIS EEMANPDADFDALMEEMGELQSAIDAADAWDIDSQLEQAMDALRTPPGDEPVTNLSGGEK RRVALCKLLLEKPDLLLLDEPTNHLDAESVLWLEQHLASYPGAVIAVTHDRYFLDHVAEW IAEVDRGRLYPYEGNYSTYLETKRARLEVQGKKDAKLAKRLAEELDWVRSNTKGRQAKSK ARLARYEEMAAEAEKTRKLDFEEIQIPPGPRLGTVVIEAKDLKKGFGDRVLIDGLSFSLP RNGIVGVIGPNGVGKTTLFKTIVGLEPLDGGELKIGETVKISYVDQSRSNIDPEKSLWEV VSDGLDYIKVGNVEMPSRAYVSAFGFKGPDQQKKAGVLSGGERNRLNLALTLKEGGNLLL LDEPTNDLDVETLTSLENALLEFPGCAVVVSHDRWFLDRVATHMLAYEGTAEDPANWYWY EGNFESYEANKVGRLGPEAARPHRVTHRKLTRD >gi|289556972|gb|ADCD01000076.1| GENE 3 2757 - 3308 465 183 aa, chain - ## HITS:1 COG:Cgl2925 KEGG:ns NR:ns ## COG: Cgl2925 COG0629 # Protein_GI_number: 19554175 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-binding protein # Organism: Corynebacterium glutamicum # 5 119 8 123 225 77 43.0 1e-14 MQDLITVRGFVATDPATRHTASGAAVTGFRLATTERRFDREAAEWVDAHTNWYSISAFGQ LGSNTAQSVKKGNPVIVTGRLRVRDWSTGERSGTSVDVVADAVGLDLGFGSAAFQRSQRS GAPRPESAPRDDDASGGRAGAVDDGFSAGLPDGFQGGDAPASPGPDESDAGAPEREPAAA GVA >gi|289556972|gb|ADCD01000076.1| GENE 4 3697 - 5142 1214 481 aa, chain + ## HITS:1 COG:sll1352 KEGG:ns NR:ns ## COG: sll1352 COG3463 # Protein_GI_number: 16330152 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Synechocystis # 9 321 18 330 472 84 25.0 5e-16 MTRREGVQLAALLVAAAVLYVTHSFLRYATYEAKGYDLGIFDQVVRQYALFNAPLSSVKG VDFHILGDHFHPILALLAPFYWVWPDPRMLGVVMALALTASAVPVYLFARRRAGHGVALA AVAALLLSWPFQAMVNWDFHEVTLGVPILAWLVWALDGQRAWLATGLAALLLTVREDMGV TLLAVALVMAIRRFWPQAAVTAVLGVLGYWFATSVVIPHYSPTGAFGYWQFTALGPDMRS SVLFLLTQPWNAVAVLFDHPLKVALWLLHFVPLLFLPVLSPLMLMALPILLSRLFNDRLN VWAPVYQYDAILAPLLLMAALEAAHRLAGRRDALRRLPTVLVSAALAAGLIGTALFPQVY PLHRTIVGDMTTTQHARDLDHAVGLIPDGVCVEAADNAVPHLTARTHVGLHGDIGDELAT WMIVDTSVPELGGWDPLTPEQALARAERLGFERVWSARDVVVLHHPDRAVSPTCTTYLEH R >gi|289556972|gb|ADCD01000076.1| GENE 5 5179 - 6408 1015 409 aa, chain - ## HITS:1 COG:Rv0051 KEGG:ns NR:ns ## COG: Rv0051 COG5650 # Protein_GI_number: 15607193 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Mycobacterium tuberculosis H37Rv # 1 398 108 527 560 175 35.0 1e-43 MCYSDFAQLFPTRGLSDGHFPFYTPLPPEQWMEYPALLAVVAGVTMWLVPASGDLHERTV TYFDVNATGVVLCWIVLVVATAYTARGRSRDALLVALAPGIILTSMLNWDLWAVMLAALA LWAWTAGRPTLAGLLIGLGTATKLYPLFFFGAILVLALRTGRWAGFVKAAVAGAAAWLAV NLPFMLTAFDQWSRFYTFSGDRAVSFSSTWLALAWTGWSGETFTTLQNGLFLVCCAGIAY LALAARHRPRMAQLCFLIVASFILWGKVYSPQFVMWLIPLVALATPRWRAFWIWQAVEVY HWGGVWMESARITSDGAFAGGAWWITAWYASGIVAHIVALVWLMTTVVKDILDPARDPVR RTALDQGAPEIAPGVAEDPHAGVFTGARDRLLLPPAGRGLQPLGESAGR >gi|289556972|gb|ADCD01000076.1| GENE 6 6561 - 8138 1067 525 aa, chain - ## HITS:1 COG:no KEGG:Mlut_09700 NR:ns ## KEGG: Mlut_09700 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 525 51 575 575 731 99.0 0 MTPDSVFSGTTLLNPLRVYLPGVLLSTVLLAAGSLLLVRSWLELGRALRGRWEEHGRLVA RAAWWWSAPLMLALPIFSRDVFSYLQQGRLLASGLDPYSQGVSALPGWFMQGADSIWAES PSPYGPLFLLFAETTWRATGGTIELSVTAFRLLALAGLALCLWAVPRLAAVAGRCGPWAT WVAVANPLFLLYMIAGAHNDALMSGLMLAGILLMVRPPRRRVHALWGIVLIALSVAIKPL TALVLPFVALLLPTGWARFRAADPRLRRRDRLGPWFTTAVIALAVLTILGAGSGLWFGWV PAMLTSGDAAFPYAPVGLLGLLLGAVVEAVTPLGARDVAAAFYTVMTVAALGFTAWLALR RRPLDPVFSAAAVLVVAVATAPIIQPWYLLWVLPLLACALRPLPWGADHPRWLGWVTALA VLLLTGVGVVDQLSVAQWLPVLAVRVFTLVLMLAGIGWIIHRDPVTAPLFPGRRRPPLEV VEPRAAAASPTPPEAGVPPDAPPDGPPSTAAHPASSSTRIPQERP >gi|289556972|gb|ADCD01000076.1| GENE 7 8285 - 10768 1741 827 aa, chain - ## HITS:1 COG:no KEGG:Mlut_09690 NR:ns ## KEGG: Mlut_09690 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 277 827 1 551 551 1004 98.0 0 MPASHGRIRAAQRALQYTRSRAAPNRGAGVTGDRPAGSGLRPGHHLRDGAGLLRGGAGGG GHDGRPVVAQLGDGVLDVPEGAMAAGLGGGLVVGARVPAPGQLLHGGHVHDPVVQVVDDG GHVAGEEQLVLAHRVAGQQALAGGHAGGDVLEDARGGVVELEALRQLRQQAGGGVHVPDE RVHLLEGRRGGTDHQVDAFVQDVQLGVRDEHRHLDELVDLGVQAGHLAVDPDQGGALRRG GARLAHAPRLLACLDGRFERAAPSRALAGPHGRTRRMSVSTPRPSGSTAHRPEYVGVGGL RADPQVAGADWWPILVGTLGSLLLVVGSYSVGWLASSSPINRWQWLIPWRTQETGVLAGT ALLTLGCWVMFWAWLRLGQTIRPFGRGALRTVNLATVLWCLPQVVALPIFSRDIFAYVGQ GRLMEAGQDPYVDTISSLSNWFQLGADATWADSETPYGPIFLWIEQAVVAISGDMNPDLA IFLFRLVAVAGVALIMVFVPLLARRLGVNEAWAQWISAANPLFTISFVASGHNDALMVGL ALAGTWCALRAGHPLRPQRPGQSVVWGVAGVVLVTLSLGIKPITLVLLPFIGLLWAGPTA RWLRRFAFWALTAGISFGLMALVGVLNGFGFGWVAVMVGTGTGTVPWGPIGMLSLITVGA SELLGQGADVQAVEGVYKTAGRALSVLIVLALMFLGRQDRVMARMTWAFTALVILSPIIQ PWYLLWLLPFFAVIGIRDNWQIKWVVFTVGYFLAFGASDQLFTWQFLDIADQVKAVSLIV SAVCLLWILVVDRRTSRFVKDHWHVRSAVRAGLARLRGAPRPVEPGE >gi|289556972|gb|ADCD01000076.1| GENE 8 11169 - 12155 778 328 aa, chain + ## HITS:1 COG:lin0071 KEGG:ns NR:ns ## COG: lin0071 COG0582 # Protein_GI_number: 16799149 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Listeria innocua # 27 316 101 392 400 86 26.0 7e-17 MPTLAEFFPRYIEHRGLRCTPGTLAGYEAEAARTFLPRLGELPVDMIDRRTVAEWIRWQL QQPTARWRAAAARAAAATPPRPEPPLATVSPKTVRNAHALLSAVLGFAVQEGILPANPAR GADLPDDDVEEERGIFSRAEWARFYAAMSESYQPLLIVLLVTGARWGEATALQVRDLDVA ASVIHVRRAWKKGKEGAVLGVPKTARGRRTIMLPDWAVETLEPLAAGRAADEFLLTAPGG GVIHRTNFVERHWKPALAAAGIAKHLTPHSLRHTFASWALMDGVPAQVVQHRLGHESLQT TSRVYAHLLLDAQRAAVDAIGWEPSPGT >gi|289556972|gb|ADCD01000076.1| GENE 9 12273 - 12815 193 180 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|289706259|ref|ZP_06502621.1| ## NR: gi|289706259|ref|ZP_06502621.1| hypothetical protein HMPREF0569_1564 [Micrococcus luteus SK58] # 63 180 1 118 118 214 99.0 2e-54 MSSIRCRAAALCAALGLALTGCGADVPATPGPTTSAAVTSASPAPSTSRAAAAAEPARSQ GPVSVSALLQWVPDDPNVKGAIKGHWNIFVNGRLVATTTGPRNEWIPSKHAGPGQWLILD VPDAKEGDRVQVLASAPDALARGRVACSLTVLNARTPLDRETSEAGELPSVECDAVVTGP >gi|289556972|gb|ADCD01000076.1| GENE 10 12856 - 13137 132 93 aa, chain - ## HITS:1 COG:no KEGG:Mlut_09650 NR:ns ## KEGG: Mlut_09650 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 90 1 90 90 114 91.0 8e-25 MTTSTQAPASAGHLSVRDHMVMQLWGRRWRHGAARDRAAEHLVGLRGTALAMRVAVLAED PVAIAAYPVITRRAREARQTRERAMRAPAASEG >gi|289556972|gb|ADCD01000076.1| GENE 11 13168 - 13581 252 137 aa, chain - ## HITS:1 COG:no KEGG:Mlut_09630 NR:ns ## KEGG: Mlut_09630 # Name: not_defined # Def: protein of unknown function (DUF955) # Organism: M.luteus # Pathway: not_defined # 1 133 1 133 135 210 93.0 2e-53 MFHPWRALRTLTHVVVVWARPHPTAPAATDGATVIWLDPRMTQAERRCALTHELVHLEHG HRGCQPPAVEHAVRAAAARQLITLEQLSAALPWSMSLDELADELWVTPLVLLDRLAGLTR AEREHLEARIPEHRDTV >gi|289556972|gb|ADCD01000076.1| GENE 12 13719 - 14474 567 251 aa, chain + ## HITS:1 COG:MT2803.2 KEGG:ns NR:ns ## COG: MT2803.2 COG4422 # Protein_GI_number: 15842273 # Func_class: S Function unknown # Function: Bacteriophage protein gp37 # Organism: Mycobacterium tuberculosis CDC1551 # 1 243 1 243 284 371 71.0 1e-103 MANTSAIEWTEVTWNPVTGCDRVAAGCDNCYALTLAKRLKAMGAEKYQNDGNPVTSGPGF GVTLHPKALDQPRSWKAPRVVFVNSMSDLFHAKVPLGFIRDIFDVMRETPQHTYQALTKR SLRMARLADRLDWPANLWMGVSVEDETVTGRIDHLREVPAAVRFLSCEPLIGPLRDLDLA GIDWVIAGGESGANHRPMDQAWVEDIRDQCVSADVAFFFKQWGGRTPKANGRLLEGRTWD EMPTARAALAG >gi|289556972|gb|ADCD01000076.1| GENE 13 14446 - 15654 653 402 aa, chain - ## HITS:1 COG:no KEGG:Mlut_09610 NR:ns ## KEGG: Mlut_09610 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 402 1 402 402 762 98.0 0 MSANKNFFTSQQPAAVFKLKVLEDYLTAWATKVASKAPREVAYVDGYAGAGQYDDAHKGS PLYAVDIARKLAAQNRIMHIHLVERDRAHAETLRHAVAAQGQGAGPVYLHHGAVEEQIDA ILNDIGTRPALFFLDPFGTALPYDVVASKLLLRPARSTEVLLNFSLSTVWRIGGVVRKGA SASSGETVTLLRGDRFLGGPWWREVFAEARRQADVSGDSSSAATAASYVAREYMQRMTGE TAHNVISVPIRRTPSEGPIFTLMLFYQHFAAPMLFADAAARAHRKWRQVNSENYYQGLLD DTQGSLFDLQETFDQQVVAEQTDVRNRAIAAIQTRLSSHLGQGQAVRICDDVPHWLGEHL GTAGASEVRQAIKNLQKAGIAQGYTKDMVEGRAVILPARRGR >gi|289556972|gb|ADCD01000076.1| GENE 14 15651 - 16259 317 202 aa, chain - ## HITS:1 COG:no KEGG:Mlut_09600 NR:ns ## KEGG: Mlut_09600 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 202 1 202 202 298 97.0 8e-80 MNDMHSLGRLIASAQERNGWSLRDLAARAERAGYDMSHTSFARLKSTPVTSIKGENITML ALVLKVPVAHVATAALESMGVELDSALHPSVLDVVQESPDLSTYDQELLTAVLRVMLDRR RTDHHDEHDRPDQHQDRERGTAERGGARGGDAGAEQKTAVAGAPADFDLAAHPDFELTRD RQAREWGDVGEENQDPGDEAGA >gi|289556972|gb|ADCD01000076.1| GENE 15 16368 - 16778 202 136 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289706265|ref|ZP_06502627.1| ## NR: gi|289706265|ref|ZP_06502627.1| conserved domain protein [Micrococcus luteus SK58] # 17 136 1 120 120 223 99.0 3e-57 MAARIWGYRRGPGEKQVDTWANSLYRFAGHHVTRKVTVMGQVIHLPLGELYMKLRDRKRL QRLMIVQDVSARQLARAAGWKSHSYMNRLLNGQAETLAPEPALRIAHHLGVGVEDLFLTK VERPTHHNGTHERTAA >gi|289556972|gb|ADCD01000076.1| GENE 16 16775 - 17560 609 261 aa, chain + ## HITS:1 COG:XF2506_2 KEGG:ns NR:ns ## COG: XF2506_2 COG3617 # Protein_GI_number: 15839096 # Func_class: K Transcription # Function: Prophage antirepressor # Organism: Xylella fastidiosa 9a5c # 3 117 10 123 278 95 42.0 1e-19 MTALTPFQYGATAVRTAVIDGEPHFVAADLCAVLEIGRQQDATRYLDADEKRGCLVDTPS GPQTMVVVTEAGMYSLVLRSRKPEAKAFKRWLTHEVLPAIRKTGAYSVQRELTEDEIIHR ALTLTVAKVEALEAKVAEDAPKVAAWESIVSSAGSWSYNDAAKVLCESGQIEIGEKRLVK ALVDWGYLYRDAKGRPHVYQRYVEQGLFVVKARTYRDLVSGEVRESAAPQVRLTGKGLGV VRSRLTDQPAFELLGIRVVTA >gi|289556972|gb|ADCD01000076.1| GENE 17 17557 - 17808 170 83 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289706267|ref|ZP_06502629.1| ## NR: gi|289706267|ref|ZP_06502629.1| hypothetical protein HMPREF0569_1572 [Micrococcus luteus SK58] # 1 83 1 83 83 92 100.0 1e-17 MTAPAAPFYVENLRRARLARTARAAELAAARLEDLEHLAADRVTREAAAPRAGFPTVEAM ERFCRRVGRHDLIQSLPLQRSAA >gi|289556972|gb|ADCD01000076.1| GENE 18 17805 - 18074 279 89 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289706268|ref|ZP_06502630.1| ## NR: gi|289706268|ref|ZP_06502630.1| DNA binding domain, excisionase family [Micrococcus luteus SK58] # 1 75 1 75 89 106 100.0 5e-22 MTAAVAQTVEVPAVLTTADLATRWQVSEEWVQDAAKAGRIPGFKVGRAWRFRVDAVLAHE EAEQAALSPANVFALAPGAVARRARRATA >gi|289556972|gb|ADCD01000076.1| GENE 19 18131 - 18544 280 137 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289706269|ref|ZP_06502631.1| ## NR: gi|289706269|ref|ZP_06502631.1| hypothetical protein HMPREF0569_1574 [Micrococcus luteus SK58] # 1 137 1 137 137 257 100.0 1e-67 MYFQIDPPGSDFTRVHLDVPNGQLEEIIRAVTTSQPATVTGEAQHTKIEALLEEAVELLK SVALSVMPPVYRFSGNARASGRMGPEDLTRGVWAIPADDMRVSFAGTTLADEDACRRVDD VDQDGPDCEGPEGGESA >gi|289556972|gb|ADCD01000076.1| GENE 20 18747 - 19004 109 85 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSASTIDRPHEALQANADVLGVVPCPSVVMWRAPAPAASGGGPAEWLHCAACGQAEWFPH GGHGRALLVEALDEHLQHRGGGGRG >gi|289556972|gb|ADCD01000076.1| GENE 21 19054 - 19311 159 85 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289706271|ref|ZP_06502633.1| ## NR: gi|289706271|ref|ZP_06502633.1| hypothetical protein HMPREF0569_1576 [Micrococcus luteus SK58] # 1 85 20 104 104 148 100.0 9e-35 MPQPYPWVSYRSRDELRAAVVRATRVYWASARRVDVTLAGSDWRECRGEVFLSLPGGQTV DARFFPVFDPSRPASEQARRSEGDR >gi|289556972|gb|ADCD01000076.1| GENE 22 19311 - 19619 131 102 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289706272|ref|ZP_06502634.1| ## NR: gi|289706272|ref|ZP_06502634.1| transcription factor WhiB [Micrococcus luteus SK58] # 1 102 2 103 103 172 100.0 6e-42 MTDMTEIATEPSRQTEDGVEHTPCQLADPDIWFTPSSEAAAVTACWECPARDACLRAAMD AEGTARTSSRFGVWGGLTPMQRSALHRADRPGRHTSAKAGDR >gi|289556972|gb|ADCD01000076.1| GENE 23 19825 - 20157 112 110 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289706274|ref|ZP_06502636.1| ## NR: gi|289706274|ref|ZP_06502636.1| hypothetical protein HMPREF0569_1579 [Micrococcus luteus SK58] # 1 110 1 110 110 150 100.0 3e-35 MTTQPAPRATVTVADLIVENRDLRDRVTELEAHLARLLALPATCPVAEPRPCTTVLRPRL VPDTDPTERLGGEQGTTRLAAAAAEVHEWAQATADRRRRVPSSAPMAVTT >gi|289556972|gb|ADCD01000076.1| GENE 24 20226 - 20750 516 174 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289706275|ref|ZP_06502637.1| ## NR: gi|289706275|ref|ZP_06502637.1| hypothetical protein HMPREF0569_1580 [Micrococcus luteus SK58] # 1 174 1 174 174 305 100.0 6e-82 MFTQTYTPGHPFHDPREWQGPLNPATPDEAIQAGDLVMARRGPSVRVGVAAERNKTGRWV DSTGLVLIPKERSGDLWEAWIIQSPGPEPLPTEAPALITNAMDGEGDRATTLVLNADGLW YGTWETSETDDEGLPVYVIATAEPDALLAFTDPDGVEWARDDAAAPWEQQEARA >gi|289556972|gb|ADCD01000076.1| GENE 25 20747 - 21340 365 197 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289706276|ref|ZP_06502638.1| ## NR: gi|289706276|ref|ZP_06502638.1| hypothetical protein HMPREF0569_1581 [Micrococcus luteus SK58] # 1 197 1 197 197 298 100.0 1e-79 MSATVDPVEEPTPEPAPAEPTPEPAGEQTPAPTPTPQAGDPWEPCTFDDLRLRDRLRCQW IHRGRLLAREGTVAGFSTLVGTDPQSTTTAVLDTEGLVIVTRREAESSAVLTRVPAPVQP VDYATLPAVFGEILTDIRGLDGRTHTSAVWNGFHWFTEGGEALNATDISAATHQDHRLTH DGETEIGQPRFRKEPLA >gi|289556972|gb|ADCD01000076.1| GENE 26 21337 - 21702 248 121 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289706277|ref|ZP_06502639.1| ## NR: gi|289706277|ref|ZP_06502639.1| conserved domain protein [Micrococcus luteus SK58] # 1 121 1 121 121 160 100.0 2e-38 MNPHTILRRLTALVGAALAGLRVRRLIREARLGCRHVHDRDAAAGAVVAALGVLVLAHRL SETEALVRIFPDGAGGDRGSVILTRGDAVSAVTHAIPFSCVESLTALAPAVRRLARAEVA A >gi|289556972|gb|ADCD01000076.1| GENE 27 21720 - 22586 735 288 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289706278|ref|ZP_06502640.1| ## NR: gi|289706278|ref|ZP_06502640.1| hypothetical protein HMPREF0569_1583 [Micrococcus luteus SK58] # 1 288 8 295 295 551 100.0 1e-155 MQFRQALAAALPHTGGPKSGVLEHLRVQVSDRWVWVMASCGFTSVMARSSVLEVEDLTGD PATDAFHLSPAAAKAVLAVFTLADELDQTMLMITREITDAGHQLTFQDVGGLLAGNELVL QGGDPDPEFPNVPASVMPAPFVGEELPLHTLVHEKGLARFVRTAKAYGGELTITGNRRTG ASYLVAAGPHCRGLLTIARLDPEDGDTPDFGGLELDWREQTEDLAHALNRIQREHLARKD ETEAKEALAAAVRKGFKDDALDGLTVSTGGSSFTITRDDVARLDEVDS >gi|289556972|gb|ADCD01000076.1| GENE 28 22746 - 23084 221 112 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289706280|ref|ZP_06502642.1| ## NR: gi|289706280|ref|ZP_06502642.1| conserved domain protein [Micrococcus luteus SK58] # 1 112 1 112 112 209 100.0 4e-53 MTDLPTPPGHIAITHEDIQRALGWIYEIADGPSANPNETPEDSRDVSIAMKLGATALAMK PQYEHAASVIVRTYCDLIGIDHDALEGDLLRLVAEHRVAELGKQIDEGEDHA >gi|289556972|gb|ADCD01000076.1| GENE 29 23077 - 23322 136 81 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MPDLTLDHPAVEAASKAWGDSAPTTTAMWAGMSEHRRDLVRERMTEALKAALPHLTAERD GHTPQEAAAHIRTAMNGESHD >gi|289556972|gb|ADCD01000076.1| GENE 30 23315 - 23743 279 142 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289706282|ref|ZP_06502644.1| ## NR: gi|289706282|ref|ZP_06502644.1| hypothetical protein HMPREF0569_1587 [Micrococcus luteus SK58] # 1 142 1 142 142 234 100.0 1e-60 MTDRTATGEAREALDDLHLAAHENGPTTDLSTHFRRARRLWVTVVGEHHMAYGEPVPAWD ELGASMQFMLTGFVARAVQDVLEVEQVMYRALSAALDLADRWTVEAHQLQAVPRRTGQTH AAERLCAARELRAALAGVEGEG >gi|289556972|gb|ADCD01000076.1| GENE 31 23743 - 25077 447 444 aa, chain + ## HITS:1 COG:no KEGG:CE0837 NR:ns ## KEGG: CE0837 # Name: not_defined # Def: hypothetical protein # Organism: C.efficiens # Pathway: not_defined # 1 387 1 401 421 117 30.0 6e-25 MPWLKVSDASATHPIALAAMEADDADDRIVNELFGFVARCAVMAAQHERDYVVTVGTARV MAGSPRFEALVAAAVRAGYFVETTAEDAEGVPRRAFRLVEEKDLFHMFLKKERAWETQRR NDVANPELTVPVRLRDGDGCRWCGKTVAWRDRKSGRGATYDHVRPGQGAASPEDLVVACR SCNSARKDEKNTSFDRALMPPPKHPLYGADTLAFLAEHDVVPAPTAPEEAGSTTPAAEQA PQRESAPAQATAAPTDAAGSTAGDATAAPRQGVRDTASRQERQRAAQVRDARGPGEPAAV APTQRDVARRLLDKRKQERLEALAAERGIPQPAPATERAWVDLAEVEWEPDDAGPPGVGP DLQIPADRQAEGSGFPGSGRVGSGRVGSGRVGTCLDGHGPGSGWDVPGRDGSAGGSGGAG KGSGRRRRRGRRGGRGRGGDRGEG >gi|289556972|gb|ADCD01000076.1| GENE 32 24797 - 25387 206 196 aa, chain + ## HITS:1 COG:no KEGG:Xcel_0562 NR:ns ## KEGG: Xcel_0562 # Name: not_defined # Def: VRR-NUC domain protein # Organism: X.cellulosilytica # Pathway: not_defined # 94 183 4 101 123 67 39.0 3e-10 MPARRASALICRFPQIARLKDLDSPGRVGSGRVGSGRVGSGRAWTGTGLARAGTCLDGTG ALVGLVGLGRALADEEDGEDVVVVVEEVTVVRADEYAQMMAAGMREDDFQRQVEGLAESL GWKVYHTHDSRRSHRGWPDLVLGRRGRVLFRELKTMKGRTTPDQKQWLELLNAAGHDAAV WRPVQWFDRTIERELT >gi|289556972|gb|ADCD01000076.1| GENE 33 25399 - 26097 261 232 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289706285|ref|ZP_06502647.1| ## NR: gi|289706285|ref|ZP_06502647.1| hypothetical protein HMPREF0569_1590 [Micrococcus luteus SK58] # 1 232 6 237 237 389 100.0 1e-107 MVVDRLTMTTPQMVRTSAGPVVVRVAPLLEVLQGMVHHRTAGAGGRSSSSSGSGAPLDME ALNLMVSVEEELVHLQWVMRSAHPPARAEMQAAADLFRVPFAVVAGPPAPGFGGMTVFER LRWTAVRAAALGRDAEVLAVVRGWVSAIERRMDPPVVIQPRKPCPACGEHMAWTMDPSVD ELVQVPAISVVVGDRPRGWCIECGAEWVGPEVVDLVAQCGGSTELARNLLGR >gi|289556972|gb|ADCD01000076.1| GENE 34 26334 - 26681 187 115 aa, chain + ## HITS:1 COG:no KEGG:Blon_1122 NR:ns ## KEGG: Blon_1122 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 2 104 50 152 164 71 40.0 1e-11 MPYALRKPCAEAGCPRLVGAGRRYCDEHQGSYERRRGTRQQRGYGPGHEAVRERMRPAVE AGTALCVRCGRYIKPGDAWVADHNEDRSGYLGPAHRKCNDAAGGRAVRHRGAATR >gi|289556972|gb|ADCD01000076.1| GENE 35 27016 - 27390 248 124 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289706288|ref|ZP_06502650.1| ## NR: gi|289706288|ref|ZP_06502650.1| hypothetical protein HMPREF0569_1593 [Micrococcus luteus SK58] # 1 124 18 141 141 231 100.0 1e-59 MAEVASVLGLPQWSIRVMEKPCEKDAQATVGVIHGRYVAEVRLSRGWTHVHPDEQRNTLV HEVLHLFHHRIDDVVLAAESAVPKKALRRLHDGLNVELEYMVDLLTTVVQDMPAVRSAWH RHYS >gi|289556972|gb|ADCD01000076.1| GENE 36 27420 - 28022 573 200 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289706289|ref|ZP_06502651.1| ## NR: gi|289706289|ref|ZP_06502651.1| phage terminase, small subunit, P27 family [Micrococcus luteus SK58] # 1 190 1 190 200 327 100.0 2e-88 MPGPAARPALAVVREGNPGHRPVPESVVLPPADDFPEPSWAREFPEAKAPKKPAEPEREP DESVEHFTQRQYRWEKALAVYERRRQAINGTRFVRKRAAEEWARVVPVLRNSVGLSEPDW SLVVDYCVCVARLEWAEHELSREGLIVMGQRGAAKNPMTTIAAQYRAQLKTYVRELGLSP AARTGLPAREDGGDDFDPFD >gi|289556972|gb|ADCD01000076.1| GENE 37 28125 - 29795 1331 556 aa, chain + ## HITS:1 COG:Z1854 KEGG:ns NR:ns ## COG: Z1854 COG4626 # Protein_GI_number: 15801322 # Func_class: R General function prediction only # Function: Phage terminase-like protein, large subunit # Organism: Escherichia coli O157:H7 EDL933 # 46 510 13 460 509 180 28.0 6e-45 MSHEQILEAAGKRPRTVAFQADQHPDAWFDVARAQRALRALGAFTHTKGRWAGVHLRLGQ GLDPWQVVWILAPVFGWVYFDAELDRVVRVIRRVWVEIPRKNGKSTISSAISGVLLLADQ EPGAEVYNAAGSKEQAARVFEDAKRMLSTSKAARSRVEPLKDVVRVPRTASILRVLSSVA ETAHGLNVSGAVVDEVHTLRRKAGLVDALETGVGARDQPLLLYITTADEAEDGTPYDEKH TYTLNVASGIISDPSFYGVVWGAEEGDDPFAESTWAKASPGFPKSPNRRYMETEAKKARN SPRELAVFKQLALNLRTASTSRWLDIGKWDELTARPDRARLRGRRAWAGLDLSATSDFTA WAVWVESTRPGYQLELLIDYWVPEDRVEALQEQLQVPLQAWVDQGYVHATEGDVIDYAAV KAKAVGDARHYDLQRISYDRMFAGHIVQEIDQAARGVDLVPVGQGFVGIGPAAKEFERLI NGGLVILPDDPVSRWMALWVETKTDETDNIRPVKPNRRSSMRRIDGIQAAVTGLDGWVRA GLNTKPERKVTVFGRR >gi|289556972|gb|ADCD01000076.1| GENE 38 29815 - 31254 1030 479 aa, chain + ## HITS:1 COG:no KEGG:Amir_5621 NR:ns ## KEGG: Amir_5621 # Name: not_defined # Def: protein of unknown function DUF1483 # Organism: A.mirum # Pathway: not_defined # 1 461 1 438 474 267 38.0 6e-70 MDRIDEVKALQQLDRQLTERKKTLEKYDQYLNLEQPLKYMAPALQEEFGDRLTQLVLDLP NVIVEAYESVLDVQGFTLPGGDGTSVAQGSRPGVQGRPGEAVVPSAAAGIGEQIHQVWMA NGMAQQMPMLQTESIGLGNAFIITGPGESVDDAPLVTVESPMQVVAVRDPRTRRIARALK RWEEEDGSGKIEQWATLYLPGRRATFVQRGKDWTEDRKNRDEHDGTSTRVVAFPNKQRLL RMDGMPEFAGVLPTLDAINKMATDMMISGEFHAMPRRFAFGLSKEDFQDENGKQLSVWQQ LAGGVWASEANASEVKVGQFEEADLKVFHDSIKLLLAITFMQVALPSHISAFQGDNPTSE PAIKAAEIQKTKRAERKQTFIGGGLVEVMRDCWSVMGRPEDELRGLEVNWRNPATPTRAQ EADAAVKLVQAGVIPPQQARVDLNYSPAQMRQMDEWDKQNASDPFFERTMRDTENVDGL >gi|289556972|gb|ADCD01000076.1| GENE 39 31238 - 32563 959 441 aa, chain + ## HITS:1 COG:no KEGG:SCAB_61091 NR:ns ## KEGG: SCAB_61091 # Name: not_defined # Def: hypothetical protein # Organism: S.scabiei # Pathway: not_defined # 14 326 16 356 358 128 36.0 5e-28 MWTASEKYPNPTVAHYRRVQRLQAAALRRADRYWAHVDSGHISESWAALLPHLTRDVTTA QLEAAIAGATYGAAALAATGTWEPPAGFLDPRALAGHAPDGADLAYMLYAPARTAKIGIS RGMTERHALTFGRDQLRALMKTTVTDAARVAAGADMAARPRVQGYTRMLNPPSCPRCVVL AGRFYRWNAGFRRHPNCDCVHQPVAGRAAAEAEGLVSDPYEYFEGLTQAEQDHWFGKANA QAIRDGADLNQVVNAQRGTGYAGISKDGTRRGQRRTGTTTEGTSKRGYATWGAGVKGSRV TPEAIYQQAGNDRAKAIALLERNGYIVPGGQVPGGSIIGDREGLGALGRGGTRKGASEAV RAARTTGVRDPRQRATMTEAERRRSDATLRWEAVLAGRNPYGRGPLTPALAATAETDYRR IVVLGDEAARLTTKKAAREAG >gi|289556972|gb|ADCD01000076.1| GENE 40 32623 - 33285 655 220 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289705804|ref|ZP_06502186.1| ## NR: gi|289705804|ref|ZP_06502186.1| conserved hypothetical protein [Micrococcus luteus SK58] # 1 220 1 220 220 338 100.0 1e-91 MHTSQIPAAFAARKGIDLAAPGGVEALLEFHRGFFGDATMQDDSAGDGQQGDPAAPAGEQ EPAGDGGDEQLGEPGKKALTAEREANRQLRSELTDLQKRLKDYEDRDKTAEQKQAEHLTE LEQQAATAKSSLAEKDALLLRYQVAAEKGLDLSAAERLRGATKEEIAADADDWISTWGTG KTPARQHVPDPGQGPRHTPKEDDYSVGQARARQRFGTPNT >gi|289556972|gb|ADCD01000076.1| GENE 41 33358 - 33747 402 129 aa, chain + ## HITS:1 COG:no KEGG:nfa15270 NR:ns ## KEGG: nfa15270 # Name: not_defined # Def: hypothetical protein # Organism: N.farcinica # Pathway: not_defined # 1 109 1 105 122 74 41.0 1e-12 MDISVRKDTVLSENRSWLGSAHGTEATRTVTLDTGKFTGNKVSNGSILSGLVLGRITATG LYGPYDNAATDGREVAAGFLFNTIPVPAGATKVGAPLMEHGVVIEAKLPTGNGLDTAAKT DMAGRIITR >gi|289556972|gb|ADCD01000076.1| GENE 42 33766 - 34707 351 313 aa, chain + ## HITS:1 COG:no KEGG:MMAR_3896 NR:ns ## KEGG: MMAR_3896 # Name: not_defined # Def: phage structural protein # Organism: M.marinum # Pathway: not_defined # 8 261 9 270 353 113 32.0 1e-23 MAQIIDLVPPPALTAYVREVPSPTAWILNRFLPDVLVPDIEAGIDRTIKRNRAAAFRTYD AESPIGARSPFERSRVTLPPISEKIPLGEHERLQLERIRSGGSGNTAQLVDQVYDDGANL AGSIQARMELARGDVLTDGKFTLANENGLTLEADFGLPAEHLVAPSVLWSDRENATPVSD LEAWADQYEEATGERPGYVVMSRTAKAHLMASVEARSLAGLTGPGMVATLDNNQLGSILA ARDLPEIVVYSAQIDVNGTATRPSRPTAWSCCRPTPATWATPPGASPPSPWSSRPRTAAC SASSSCPACSRPS >gi|289556972|gb|ADCD01000076.1| GENE 43 34820 - 35263 441 147 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289705807|ref|ZP_06502189.1| ## NR: gi|289705807|ref|ZP_06502189.1| hypothetical protein HMPREF0569_0492 [Micrococcus luteus SK58] # 1 147 1 147 147 225 100.0 5e-58 MADDVLQYTVTDHATGTRYVVGTVPPEKFLQHLRKHNPRALGAAPAGHISPAGAVTISTE VTTTQTVTEDPEDTGPAVYPEGAPDDTWTVKDLRAWAKANDLTLGEAKAKPQILEVIAEH LGETSPTVDESSNEEHDDTRTDSPESE >gi|289556972|gb|ADCD01000076.1| GENE 44 35283 - 35702 214 139 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289705808|ref|ZP_06502190.1| ## NR: gi|289705808|ref|ZP_06502190.1| hypothetical protein HMPREF0569_0493 [Micrococcus luteus SK58] # 1 139 1 139 139 224 100.0 9e-58 MTGILNADQETVEKFLLRPLTSQEATYVDGLLNTAWFRLLLALPSLPARLAAKELEQTIV DDVVGEMVANVFKNPSGARSRTTTINESMSLDDYSEQTQTSTQETIDRALAEGMLYPTES QLALLRPARAGAFTIRPGA >gi|289556972|gb|ADCD01000076.1| GENE 45 35702 - 36127 197 141 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289705809|ref|ZP_06502191.1| ## NR: gi|289705809|ref|ZP_06502191.1| conserved domain protein [Micrococcus luteus SK58] # 1 141 1 141 141 234 100.0 1e-60 MRSPEEIEACLLRGRAAAEALMTTRVRVHRATGRKTTDPRTGVVTVETSVVYGDGPDGDV GKVQTGAGGPRGREDVAGRFAVVEGPQVDLPVRSRCVAGDIVEVLASRMDPDLVGLRMEL RELDRGEYRTADRWSAELVTR >gi|289556972|gb|ADCD01000076.1| GENE 46 36124 - 36504 404 126 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289705810|ref|ZP_06502192.1| ## NR: gi|289705810|ref|ZP_06502192.1| hypothetical protein HMPREF0569_0495 [Micrococcus luteus SK58] # 1 126 1 126 126 223 100.0 3e-57 MNGSEELRAYATNLGRIGLEVAGEVDKVLKRGAQNIKTGLQENLRESKHFRQVAASISYD QIGDVRALGYEVGPDKDRHAGALANVAFFGTSRGGGTVDFEGPLREEEPRLVGHLQELLG RMGGDL >gi|289556972|gb|ADCD01000076.1| GENE 47 36582 - 36884 206 100 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289705811|ref|ZP_06502193.1| ## NR: gi|289705811|ref|ZP_06502193.1| conserved domain protein [Micrococcus luteus SK58] # 1 100 28 127 127 191 100.0 2e-47 MPAYPYVLVTPRRPWIRDRALSRARHGRRVSWLLTVAGLSSAAVLVLVDGCVSALDGGRV LGQRLELEPGGTDVLTDDETAPDGQIVHFAKLQFGLTLPA >gi|289556972|gb|ADCD01000076.1| GENE 48 36702 - 37199 134 165 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLPSAGVLGISVPAMSGLLVGHARLSGLGLGGGCRPGGPEAVLRRPDHRRGRVGLAVEQL EGPADPWIGLGDVELMAGVLVADAHEHGGLLPWGPRRAGRSPRPRSGGEREAELQLREVH DLAIRGGFVVCEDVRTAWFEFQPLPQDAAAVQCGDAPVDEHEDRG >gi|289556972|gb|ADCD01000076.1| GENE 49 37156 - 37668 405 170 aa, chain + ## HITS:1 COG:no KEGG:Blon_1111 NR:ns ## KEGG: Blon_1111 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 3 170 6 174 178 106 38.0 3e-22 MAGTEIPSTPADGNMLVLDVPAIADVDKPTIAELTASSAVDLSCYLTGDGWSPSKEQASI ADERLCSTETFERPGRKTRSLEVTYIDNTNSPYETEFNKAVDTLVEGTDHYLVTRRGVPY EEPLAVGQVVEIWPVTAGEQREVAIEANSVTRTVQKLFVRGPVRRAVVAA >gi|289556972|gb|ADCD01000076.1| GENE 50 37745 - 38066 335 107 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289705814|ref|ZP_06502196.1| ## NR: gi|289705814|ref|ZP_06502196.1| hypothetical protein HMPREF0569_0499 [Micrococcus luteus SK58] # 5 107 1 103 207 177 99.0 2e-43 MEPTVALHIKRAERVVEVCLDGTLTADWELTRAKVKDLLTEAKRVTGQVNAQPQDDRLNR RKTPAEKRMAEIEKELADLNEKAESLASAALEQTVLFRLRALPRPVW Prediction of potential genes in microbial genomes Time: Thu May 26 07:56:07 2011 Seq name: gi|289556970|gb|ADCD01000077.1| Micrococcus luteus SK58 ctg1119142780165, whole genome shotgun sequence Length of sequence - 1010 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 928 771 ## COG2842 Uncharacterized ATPase, putative transposase Predicted protein(s) >gi|289556970|gb|ADCD01000077.1| GENE 1 2 - 928 771 308 aa, chain + ## HITS:1 COG:pli0057 KEGG:ns NR:ns ## COG: pli0057 COG2842 # Protein_GI_number: 18450339 # Func_class: R General function prediction only # Function: Uncharacterized ATPase, putative transposase # Organism: Listeria innocua # 166 308 142 284 285 149 47.0 8e-36 QSPIPADDRRRVPPAVDSDSSIDFIITNLGPTPARDITVTFNPPIVIPDDSDRLLAPYLV KRYERPIPVLNPGQILSNTWWAGRAGTGNELTNHEPTPDEVNVTKIYAAAHRARTVFYTP EVSATMRALQEDLRHDMIRTERCIEEHLVLHGGHVDHAHGPNPSLLELIIIDESERLTGN AIEWLRDQYDRTGIAMILIGMPGIEKQFTHYPQLYSRLGFAHQYRPLGHDELLFVLERQW RKLGKTLDPDDFTDAQAIAAVERITRGNFRLLERLLPQIQRVLKINELDVITNDVVEAAR STLVIGTT Prediction of potential genes in microbial genomes Time: Thu May 26 07:56:07 2011 Seq name: gi|289556967|gb|ADCD01000078.1| Micrococcus luteus SK58 ctg1119142780214, whole genome shotgun sequence Length of sequence - 1130 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 2 - 668 398 ## COG0438 Glycosyltransferase 2 1 Op 2 . - CDS 678 - 950 67 ## gi|289704892|ref|ZP_06501309.1| glycosyltransferase, group 2 family protein Predicted protein(s) >gi|289556967|gb|ADCD01000078.1| GENE 1 2 - 668 398 222 aa, chain - ## HITS:1 COG:CAC3071 KEGG:ns NR:ns ## COG: CAC3071 COG0438 # Protein_GI_number: 15896322 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Clostridium acetobutylicum # 9 222 3 211 372 89 28.0 4e-18 MSEQTPATIAIAHDYLTQKGGAERVVLALHRMWPDAPIYTTFYDPEGTFPEFKDAHIVTS PLNRVGLLRKDPRRALPLLPLASSLMHVKESVAVVSTSGWAHGFRYDGATLVYCHTPARW VYLLDDYLGEDGRDSIKGRVARVLRPGLRRWDRAAVRRRSRYVANSTVVKERIEDVYGLD GVDLVFPPHSVSTDGPQEPIPGAERPAEDGFLLSVARLMPYK >gi|289556967|gb|ADCD01000078.1| GENE 2 678 - 950 67 90 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|289704892|ref|ZP_06501309.1| ## NR: gi|289704892|ref|ZP_06501309.1| glycosyltransferase, group 2 family protein [Micrococcus luteus SK58] # 1 90 231 320 320 152 98.0 9e-36 MHGTAARNLFVSKHGAAPLGTIGAPRGVWGAAVRLVALGTTEATLTRSSALIDAVTDHLP RGLARRLIALQVEGAAEAGRARPHRAQRAI Prediction of potential genes in microbial genomes Time: Thu May 26 07:56:20 2011 Seq name: gi|289556944|gb|ADCD01000079.1| Micrococcus luteus SK58 ctg1119142780325, whole genome shotgun sequence Length of sequence - 23957 bp Number of predicted genes - 24, with homology - 19 Number of transcription units - 13, operones - 8 average op.length - 2.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 333 - 956 493 ## COG1275 Tellurite resistance protein and related permeases 2 1 Op 2 . + CDS 953 - 1537 225 ## Cpha266_2236 uracil-DNA glycosylase superfamily protein 3 2 Op 1 4/0.000 + CDS 1678 - 2280 359 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs 4 2 Op 2 6/0.000 + CDS 2287 - 3681 610 ## COG2801 Transposase and inactivated derivatives 5 2 Op 3 . + CDS 3678 - 4490 763 ## COG2842 Uncharacterized ATPase, putative transposase + Term 4544 - 4594 7.4 6 3 Op 1 . + CDS 4682 - 5212 376 ## COG1309 Transcriptional regulator 7 3 Op 2 . + CDS 5209 - 5553 219 ## KRH_22100 small multidrug resistance protein 8 3 Op 3 . + CDS 5553 - 5882 409 ## RER_25860 multidrug efflux transporter 9 4 Tu 1 . + CDS 6019 - 7074 973 ## COG2842 Uncharacterized ATPase, putative transposase - Term 6993 - 7042 4.2 10 5 Op 1 . - CDS 7229 - 7900 464 ## COG1321 Mn-dependent transcriptional regulator 11 5 Op 2 . - CDS 7926 - 9227 937 ## COG1914 Mn2+ and Fe2+ transporters of the NRAMP family 12 5 Op 3 . - CDS 9294 - 9473 118 ## 13 6 Op 1 6/0.000 + CDS 9590 - 9973 227 ## COG3293 Transposase and inactivated derivatives 14 6 Op 2 . + CDS 10102 - 10929 693 ## COG3293 Transposase and inactivated derivatives + Term 11003 - 11040 1.1 15 7 Op 1 1/0.000 + CDS 11347 - 11733 264 ## COG0789 Predicted transcriptional regulators 16 7 Op 2 . + CDS 11848 - 13395 1261 ## COG0659 Sulfate permease and related transporters (MFS superfamily) 17 8 Tu 1 . + CDS 13613 - 14014 150 ## 18 9 Op 1 . - CDS 13862 - 14158 173 ## 19 9 Op 2 . - CDS 14155 - 14925 563 ## COG1192 ATPases involved in chromosome partitioning 20 10 Tu 1 . - CDS 15109 - 15621 267 ## gi|289706329|ref|ZP_06502688.1| conserved hypothetical protein 21 11 Tu 1 . + CDS 15759 - 16193 134 ## + Term 16346 - 16385 5.1 22 12 Op 1 . - CDS 16513 - 20259 2095 ## COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member 23 12 Op 2 . - CDS 20295 - 20762 122 ## 24 13 Tu 1 . + CDS 20623 - 23553 2134 ## COG1002 Type II restriction enzyme, methylase subunits Predicted protein(s) >gi|289556944|gb|ADCD01000079.1| GENE 1 333 - 956 493 207 aa, chain + ## HITS:1 COG:AF0347 KEGG:ns NR:ns ## COG: AF0347 COG1275 # Protein_GI_number: 11497959 # Func_class: P Inorganic ion transport and metabolism # Function: Tellurite resistance protein and related permeases # Organism: Archaeoglobus fulgidus # 4 198 135 318 319 73 31.0 2e-13 MPIVPPMVSASTGALLLPYAPAGQARETLLWSCYGFFGLSLITSLVVITLIWNRLAQHKV GAAGMVPTLWIVLGPVGQSITAVNLLASNAPAVVDASTAHALLVVALVYGFAMLGFALLW TVIALAITIRTAREHLLFSLTWWSFTFPVGTCVTGLNGLALHSGLTVVAVLAVVYYVGLV AAWITVAVRTFHGSVIRGTLLAPPQPA >gi|289556944|gb|ADCD01000079.1| GENE 2 953 - 1537 225 194 aa, chain + ## HITS:1 COG:no KEGG:Cpha266_2236 NR:ns ## KEGG: Cpha266_2236 # Name: not_defined # Def: uracil-DNA glycosylase superfamily protein # Organism: C.phaeobacteroides # Pathway: not_defined # 35 168 48 180 326 77 35.0 3e-13 MSTPDELADEVADVRSLNALAEAWRTAPDGSRRFVPNFDPRSGGTSSRVLVLMQSPGPQT IAAAHTAICSEDNPGPTAAAFRAARIESGLARNDYLRWNLIPWEILGRVRPVDIDEGRHA LETLLKVLPVLDAIVTYGTAALNGVMRHLTLDEHPRLVPVIAAPHPSPANGRHRAEQQRR SVQALRLAALTHRL >gi|289556944|gb|ADCD01000079.1| GENE 3 1678 - 2280 359 200 aa, chain + ## HITS:1 COG:PA3867 KEGG:ns NR:ns ## COG: PA3867 COG1961 # Protein_GI_number: 15599062 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Pseudomonas aeruginosa # 4 194 2 191 191 180 54.0 1e-45 MGHLLGYARVSTTDQDASLQIDALGAAGCYRVFVDTMSGSLQHRPELDKLLDQLRPGDTL VVWRLDRLGRSIRHLIDQLHALAERGIGFRSLQETIDTTSPGGRLVFHVFAALAEFERDL IKERTNAGLAAARARGRTGGRPSRLSADQVRTARRLYEQQDMTVAQIGDVLGVSRTTIYR TLAKHAEPVARRRAKPSPTM >gi|289556944|gb|ADCD01000079.1| GENE 4 2287 - 3681 610 464 aa, chain + ## HITS:1 COG:SAP014 KEGG:ns NR:ns ## COG: SAP014 COG2801 # Protein_GI_number: 16119214 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Staphylococcus aureus N315 # 3 462 19 480 480 378 40.0 1e-104 MDASERWRILRLHVEDAIPLATLARSTGVTERTLQRWLARYRTGGYAALADDARADHGVR RTAPELVRLVEGLALTKPRPSIATIHRQVGVHCAERGLPSPSYSAVRSIVNGLDPGMVTL ALEGPASYRDKHELLLRRRADRPNAIWQADHTMLDLLIVGPNGKPARPWLTVILDDYSRA ICGYMVFLGAPSAANTALALRQAIWHKPEPDWPVCGIPDVLYTDHGSDFTSHRLGDTAAV LHLRIIHSQVARPQGRGKIERFFGTINTELLPTLPGHFAAGSSAPTPALDLGGVDSAIST FIRSYNARTHRELRTSPLHAWIADGWLPRLPESLEQLDGFLLTVPTTRVVQRDGIHFEGL RYTAATLAPFVGSTVSVRYDPRDVTEIRVFHRDVFLCTAISTEHQTETISLKQIQAARNA HRRALRGQIHERIAIVNPKLDDTTTPAAVETDRPRLKTYEEDRS >gi|289556944|gb|ADCD01000079.1| GENE 5 3678 - 4490 763 270 aa, chain + ## HITS:1 COG:pli0057 KEGG:ns NR:ns ## COG: pli0057 COG2842 # Protein_GI_number: 18450339 # Func_class: R General function prediction only # Function: Uncharacterized ATPase, putative transposase # Organism: Listeria innocua # 5 270 6 284 285 187 37.0 2e-47 MTSQFIVTKEHRRFAEFADAVRKQNTIGVCFGPAGVGKTLSARRYAHWDSIGPFIARWAA RSEDDTKIYAAAHRARTVFYTPEVSATMRALQEDLRHDMIRTERCIEEHLVLHGGHVDHA HGPNPSLLELIIIDESERLTGNAIEWLRDQYDRTGIAMILIGMPGIEKQFTHYPQLYSRL GFAHQYRPLGHDELLFVLERQWRKLGKTLDPDDFTDAQAIAAVERITRGNFRLLERLLPQ IQRVLKINELDVITNDVVEAARSTLVIGTT >gi|289556944|gb|ADCD01000079.1| GENE 6 4682 - 5212 376 176 aa, chain + ## HITS:1 COG:Cgl2561 KEGG:ns NR:ns ## COG: Cgl2561 COG1309 # Protein_GI_number: 19553811 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Corynebacterium glutamicum # 22 142 18 138 170 59 32.0 3e-09 MAKTTEQLLDDAIAVLRRGGVVTIDSVASEAGMSKAGVVHHFSSKEALMVGVVNRVMDLW EGQLAATIGEVTDPVERLRAYVDFEVLSDFDGGDLALLADVKLRDTLAAQWRERLRPWFG EDAPGDAGQKAALQSARLIADGAWTDQALGLLSMTGEQRALVRGIAQRLIDEGVQK >gi|289556944|gb|ADCD01000079.1| GENE 7 5209 - 5553 219 114 aa, chain + ## HITS:1 COG:no KEGG:KRH_22100 NR:ns ## KEGG: KRH_22100 # Name: not_defined # Def: small multidrug resistance protein # Organism: K.rhizophila # Pathway: not_defined # 2 110 3 111 120 109 65.0 3e-23 MKWVFLAGAIALEVTGSLSLKAAVDAPGFFALVAVGYIGTFTLLAGALKQGMPLGVGYGI WGAAGVALTAILSAVIFGEPLTALMTLGIAVVIGGVLCVELGSQAATKKREGTV >gi|289556944|gb|ADCD01000079.1| GENE 8 5553 - 5882 409 109 aa, chain + ## HITS:1 COG:no KEGG:RER_25860 NR:ns ## KEGG: RER_25860 # Name: not_defined # Def: multidrug efflux transporter # Organism: R.erythropolis # Pathway: not_defined # 1 109 1 108 108 87 62.0 2e-16 MAYLFLIIAIIFEVAGTLSLRMATSGSKKKGLWLLAVLGGYGIAFFGITMALVEGLALGV AYGIWAASGVALTAVLSRILFKEPLTKVMAAGIGLIIVGVLMIELGAAH >gi|289556944|gb|ADCD01000079.1| GENE 9 6019 - 7074 973 351 aa, chain + ## HITS:1 COG:pli0057 KEGG:ns NR:ns ## COG: pli0057 COG2842 # Protein_GI_number: 18450339 # Func_class: R General function prediction only # Function: Uncharacterized ATPase, putative transposase # Organism: Listeria innocua # 209 351 142 284 285 150 47.0 5e-36 MTRMSVLEAWTWINEYGSAIGAVAGVVAALVAIIALISAALDSKARSQPMIAAEFRPAVD SDSSIDFIITNLGPTPARDITVTFNPPIVIPDDSDRLLAPYLVKRYERPIPVLNPGQILS NTWWAGRAGTGNELTNHEPTPDEVNVTKIYAAAHRARTVFYTPEVSATMRALQEDLRHDM IRTERCIEEHLVLHGGHVDHAHGPNPSLLELIIIDESERLTGNAIEWLRDQYDRTGIAMI LIGMPGIEKQFTHYPQLYSRLGFAHQYRPLGHDELLFVLERQWRKLGKTLDPDDFTDAQA IAAVERITRGNFRLLERLLPQIQRVLKINELDVITNDVVEAARSTLVIGTT >gi|289556944|gb|ADCD01000079.1| GENE 10 7229 - 7900 464 223 aa, chain - ## HITS:1 COG:MT2858 KEGG:ns NR:ns ## COG: MT2858 COG1321 # Protein_GI_number: 15842326 # Func_class: K Transcription # Function: Mn-dependent transcriptional regulator # Organism: Mycobacterium tuberculosis CDC1551 # 5 217 9 227 228 176 48.0 2e-44 MSLDEITPVAQDYLKAIWSATEWGDAPLSTKSLAARMGTTAPNVTETVKRLAAQGLVEYQ PYKPVTLTGKGCEHAIAMVRRHRLLESFLAASLGYSWDEVHAEAERLEHAASDELIERID QMLGHPTHDPHGDPIPTPAGQRERPAHAVRLDAAEPGFYRVLRISDADPQRLICFQQAGI VPDSVVEVAEAGHFRLRVVAVGPVELIETDAAAIWLVPSSTRG >gi|289556944|gb|ADCD01000079.1| GENE 11 7926 - 9227 937 433 aa, chain - ## HITS:1 COG:Rv0924c KEGG:ns NR:ns ## COG: Rv0924c COG1914 # Protein_GI_number: 15608064 # Func_class: P Inorganic ion transport and metabolism # Function: Mn2+ and Fe2+ transporters of the NRAMP family # Organism: Mycobacterium tuberculosis H37Rv # 37 431 35 428 428 403 61.0 1e-112 MHASPLEPRMTAGVDRPADGKVAVERVDRPGRRGMRLLGPAFVAAVAYVDPGNVAANLTA GAQYGYLLVWVLVAANLMAMLVQYLSAKLGLVTGRSLPELLGHRLPRGRRLAYWVQAEIV AAATDLAEVIGGAIALHILFGIPLLAGGVIVGVVSMILLGVQSRRGQQPFEFVVMGLLAV ITLGFVSGLFYGPISWGEAVAGMVPRFEGTQTVLLAAGMLGATVMPHAIYVHSALARDRH QGAHAHPGTLGRLLRATRWDVGLSLLVAGSVNIAMLLLAAANLSGVSGTDSIEGAHAAIT TALGPAVGVLFGVGLLASGLASTAVGSYAGSEIMGGLLRWRIPQMLRRVLTLIPALLVIA SGVDPTWALVLSQVLLSIGIPFAMIPLVRLTGARAVMGRHANSTPLQTVAWVVVALIVAL NAVLLWLTLTGQG >gi|289556944|gb|ADCD01000079.1| GENE 12 9294 - 9473 118 59 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MAGAAVDAATAGTAQARPVATERREISMRGTPVRAHKRIQVHTIRFVKAGVFGYGRRCI >gi|289556944|gb|ADCD01000079.1| GENE 13 9590 - 9973 227 127 aa, chain + ## HITS:1 COG:Rv1042c KEGG:ns NR:ns ## COG: Rv1042c COG3293 # Protein_GI_number: 15608182 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Mycobacterium tuberculosis H37Rv # 1 125 1 132 135 99 43.0 1e-21 MSRFQMLSDAQWELIAPMLPTRTGRAGRPFADARTMVEAIIYRYRCGIAWRDLPEVYGPW QTVWTWHRRLAEKGTWDTVLATLTAAADAEGLIDWSVSVDSTIARAHQHATNITRHTGGW IELQESA >gi|289556944|gb|ADCD01000079.1| GENE 14 10102 - 10929 693 275 aa, chain + ## HITS:1 COG:Rv1150 KEGG:ns NR:ns ## COG: Rv1150 COG3293 # Protein_GI_number: 15608290 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Mycobacterium tuberculosis H37Rv # 2 127 54 183 183 92 42.0 6e-19 MLLPLLEQLRVTRPVGRPRTRPEAVLGDKAYSSRAIRTHLRARGIKAVIPEPADQQGHRR RRGARGGRPVSLDADAYKGRNVIERQYAHLKQWRGLATRYDKYAIIYRAAVVLNAVLAWS KRLSDMPYLRITNETLGRLSNKQVALDFDFRLSDEAAACGVRTGSVSSTSNGGTSRIALN NGKTYNATNGLAVPANGSVGRTDGTCRLGLDRTEACGTTGQSPYSVAGSTGASSTAVTAI SLYRSITVSGYGTTVVYLNATGVGTNLSVSAAPLI >gi|289556944|gb|ADCD01000079.1| GENE 15 11347 - 11733 264 128 aa, chain + ## HITS:1 COG:DR1628 KEGG:ns NR:ns ## COG: DR1628 COG0789 # Protein_GI_number: 15807649 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Deinococcus radiodurans # 16 125 15 117 185 69 45.0 1e-12 MVADSEAAMPGHAMKIGEVAGRTGLSLRSIRHYDDVGLVPPSARSEGGFRLYTEDDVTRL LRVMRITPLGFSLEETALLLEVLEGPAAEAPREDIAAYLERARKGRATLARKLRQADELL AELEALGD >gi|289556944|gb|ADCD01000079.1| GENE 16 11848 - 13395 1261 515 aa, chain + ## HITS:1 COG:Cgl1438 KEGG:ns NR:ns ## COG: Cgl1438 COG0659 # Protein_GI_number: 19552688 # Func_class: P Inorganic ion transport and metabolism # Function: Sulfate permease and related transporters (MFS superfamily) # Organism: Corynebacterium glutamicum # 47 512 1 462 462 498 61.0 1e-140 MTPASTASARVAAPPNSREPSPEQLQSVRLTLRSPGRLKTEVLAGLVVALALIPEAIAFA LIAGVDPQVGLFAAATMAMTIAFVGGRPAMVSAATAATALVVAPLVASHGLDHLIAAVIL AGGLQVVLGLLGVAKLMRFVPRSVMVGFVNALAILIFTSQLPDLMGVPWLVYPLTALGLA IILLLPRVTTAVPAPLVAIVVVTVIVLLAGADVPTVGDKGRLPDSLPALLVPDVPFTLET LQLLFPYALGMAVVGLLESLMTAKLVDDITDTHSSKTRESWGQGVANVVSGLFGGMGGCA MVGQTMINVKASGARTRISTFMAGVFVLILSVTLGDVVALVPMAALVAVMIFVSLATFDW HSIRPSTLAFMPKSETAVMLVTVAATVLTHNLAIGVGLGVLAAMVMFAQRVSHLATVTRT LEGQGRDAVARYRVQGELFFASSNDLYTQFDYAGDPARVVIDFSQAHLWDASTIAALDAV EEKYRRHGATVEITGLNVASRAMRARMSGRLGGGH >gi|289556944|gb|ADCD01000079.1| GENE 17 13613 - 14014 150 133 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MAWLPDASGSLHNSPARRPKTGPSQFATTPAPAGFVADAFQPAHVAQGTRGRHPGRTGVL SPGGAGISDGLKDQLRPLDLAHRSVHQVRADQSLDDRCLAGRCRVHGRFSTHRVADRFGH PHVQRHGRCPTPG >gi|289556944|gb|ADCD01000079.1| GENE 18 13862 - 14158 173 98 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNEKQSEPDLSLRAQRRKPSPAPQTPAPGAVIPAEPATASDPAGGYVPLARRGAPTVALN VRVPEAIRDAVRREAAMNPATPSQAAVIEALVRAHLMH >gi|289556944|gb|ADCD01000079.1| GENE 19 14155 - 14925 563 256 aa, chain - ## HITS:1 COG:BH4058 KEGG:ns NR:ns ## COG: BH4058 COG1192 # Protein_GI_number: 15616620 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Bacillus halodurans # 2 186 7 198 253 70 32.0 3e-12 MVYSEAGGVAKTTTAVSLAMSWAEQGRQVVLIDLDPRAAATKWVDVEPTEPGLHIGAVIG NPDPTGWIQDLAVPSGWHENLRVVPSDRSLSHQEADRADHAHLRLRMALSGLQADLVVID CPNRQGGPLTQNAFTASDGVIYAARPTSDGCDGVHGARQSVAAFKQSMALLGAADRLTEV GIVVSDYRDHITPKDQTVAVEELRETGLLLTPLVPARSIVPKARLACDWLGRYEKGEPVA TAYADLAGLIFERITA >gi|289556944|gb|ADCD01000079.1| GENE 20 15109 - 15621 267 170 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|289706329|ref|ZP_06502688.1| ## NR: gi|289706329|ref|ZP_06502688.1| conserved hypothetical protein [Micrococcus luteus SK58] # 1 170 1 170 170 299 100.0 5e-80 MTLTLIPPSTPDEATQQLAQLQGTTVALAVLRRVQLVKAAEAGVTQQQLAGALGRAQSSI SEYLARARTSLADRPATHPLWPAEVIDLYAAGLLPRDEVLSYLASYPYIDPAPTDDPAYT VTRPGEFGEVAAANWSGKLSDADYADLYDLLHADDQLNSIGSINFPGQCT >gi|289556944|gb|ADCD01000079.1| GENE 21 15759 - 16193 134 144 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSGSCPGGSAGRSGLLCSDSAWSGLRAGERARGLVEHPARTCQPVGAGGAARRASGPLIG PKGRIVVGTRGSGDAGVMVQPAVCVWVCVCIGGARHYSRAVAACADGSWPGSGLMAGGTF GPRFGTPSPHVLTDRGSTWRHISS >gi|289556944|gb|ADCD01000079.1| GENE 22 16513 - 20259 2095 1248 aa, chain - ## HITS:1 COG:mll0964 KEGG:ns NR:ns ## COG: mll0964 COG0507 # Protein_GI_number: 13471082 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member # Organism: Mesorhizobium loti # 495 893 358 726 1015 94 27.0 1e-18 MLRTSFVGTLVRYGGGQVRGGAVFFRGSSGAAARAYLATDRTATADDYYLEKGELTASRF VFDGAGEMVDSGTLNAEAYQGWVEWVDPSTGEVRGSRRENSVLFLDKVINVDKTLSVAAV LDLRIAQQLDAALEQMAHELMAYAASEMHTRVGPRGGQVWVPVEKLEAVTVAHRTSREGD PHRHLHLQFLNRVWAAGAWRALDTAEFVKHNAAMNRLGEAVLASHAGLQDALAQAGLSFD PATGAVVELAEAAEVMSKRAGQIAERRAQLVAQWEAEHPGQTPGEQILEGLDHLAWAQTR REKVPGELPDEDKWRAEIAATGFVMPSGPRERAVVSWSQVDKSALIRAAVEQLETSRSAW SVADVSAAVSAEFSRTGVTDYPRPVGELVREATEALVAGRCTSIAPDVDPWTAPHHLKVL TTDQVIEAERTLQGLLLAKALEPVTEQVAVAGRTYELGAHQDMDQGLLERIFAESTSTDP DGQPVSLPEGVGHRDALAAISGTHQLVVVTGAAGSGKTTLLKAAKHVGAVKGVEQVIVTP TAKAAEVAAAETGSSASTVHALLRAYGYRWETDKATGVTRWQRLNPGEGDYQGVPEGRRL GPGVQVVVDETGMLSQDVAARLFTVLHETGARAVLTGDYQQLGAVGRGGVLQMAEHATEA SVDLDTVHRFLNPVYASLSLAMRARQAPGEQFDLLVEMGLVQVHASQEEANQALAKAWVH GAREGAPPLICAATNENAQQINTAIQQHHTSTGPEAGSGLLVGMDGLPMSEGARIMTRRN DALLGVLNRQVWTIRKIGPTHTKIQDPDGGHRTLHVPNEYLTEHAHLGWALTAHGAQGAT VGQAHTLVDEHTDAAGLYVGLTRGRESNVAHFVAEDLAEARAQYVAAMGRDGADHGLDAA RQALAAQLEGMNLPGRQAPVQPVLKSAAQLRPGDQIQDGGQLLTVVAVHGQKVTMRPSQD PGSGVRTGTLKAGAQVQVWPAATTFPAPKGQRDQTLMGLGMQLRKAERVAAALTPWNTHR EQVGAWVAAHPQACELADTLDVLDERLTQARQQVHEAHQQMHEQHQAQTRQLRAEMEQAK TRAQSAGFFQRRSARAELERARAALFEHQWRTRATLPPEATVELERLTQTREEVFAQYQG LAEDFVTQLPAPQRPPGGLGVQVHTEPVSVWRHLERQPVTATADTAARAEEYQKQAEQLQ RRRDWFAQETPEVNASLWGQVKAPTRAPGPAGAAHLVPQRERDTGLER >gi|289556944|gb|ADCD01000079.1| GENE 23 20295 - 20762 122 155 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTPRSASCSTGARYRGCHERPLEILTPLPSGSLSVWTCWLSTSNDRKGSVALHLLYSPAA RLFCPCLTHHGSLTFPRRRIHGEHTPGPAGQVPYGTRSAKALTTSARCTPSPKQPSAART SAPMFTRHTHPADTTPADSRGAHAPSAWAPRERPR >gi|289556944|gb|ADCD01000079.1| GENE 24 20623 - 23553 2134 976 aa, chain + ## HITS:1 COG:NMA1791 KEGG:ns NR:ns ## COG: NMA1791 COG1002 # Protein_GI_number: 15794682 # Func_class: V Defense mechanisms # Function: Type II restriction enzyme, methylase subunits # Organism: Neisseria meningitidis Z2491 # 194 971 15 796 803 430 34.0 1e-120 MRSFDVLSQQVQTDNDPLGSGVRISSGRSWHPRYLAPVEQLADRGVIRAALDDFGHAWGQ RIDRWRTDGQTHTEKSFAQQFWSDLLRAFGVIPERIDLFERGAARASTGGAGYIDFFWSG VALGEAKSLDADLDVAHAQALDYLAGGSIGQHEWPKYVLVTDFARIRVERLGEAGWVSEF AVQDAADHVDELMFLAGRDTVTKAEEQEASIAAAQLMASMFTALVGDEVDVPVGEEAPED AEEEEFATQQASILLTRLLFLLYGDDAGLWEADLFQRWVEWDTTADNLGPQLDALFRVLN TPENRRRGVPDSLARFPYVNGGIFDGTSTAGFLTNNFRDALVAACRFRWTQISPAVFGSM FQLVKSKQARRGDGEHYTSEENILKTIGPLFLDEYRARADRLIQNKTTTRREVIGLIEEM AANIYVDPACGAGNFLNLAYAKLREIETDLLADQRRRTGSQDLSLDVSLDQRIHIDRFYG IEINWWPAKIAETAMFLVDHQANRQLAAALGQAPVRLPIKITATIYQHDALTLDWSQALP APAGRTFVFGNPPFLGDHTRTAAQLALMQAAWGEGKQLSRLDFVTSWHALTLRLLAERDG EWAFVTTNSIVQGDQPARLFAPIFAAGWRIKFAHRTFAWDSQAPGKAAVHCVIIGFTRDP NAKARLFKYEHARGEAREVPGVKTINAYLVDGPNVLVDKRSTPLAPDLPEVTYGSKPADA GNLIVTAEQYQAVMADPVMAPYVRPYVGAVELIRGQQRWCLWLTDMDPDAPSHSPELKRR LEGVAAERAKSKAASTRDWARFPHLFRQRGLVSDVPFVGIPEVSSEGRAYLPVAHFEPDV IISNKVYGAVDPDGIVFAVASSSMFITWMKTVGGRMKSDLSFSSTITWNGFPLPALTNKD RASLAKAGQNVLEARALHPERSLAQHYAPLSMDPVLVRAHDGLDTVMDKIMGAPRRCRTE LERQELLFTRYAELTS Prediction of potential genes in microbial genomes Time: Thu May 26 07:57:54 2011 Seq name: gi|289556828|gb|ADCD01000080.1| Micrococcus luteus SK58 ctg1119142780317, whole genome shotgun sequence Length of sequence - 122889 bp Number of predicted genes - 106, with homology - 103 Number of transcription units - 59, operones - 22 average op.length - 3.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 1246 905 ## COG0419 ATPase involved in DNA repair 2 2 Tu 1 . + CDS 1330 - 3687 1396 ## COG1397 ADP-ribosylglycohydrolase 3 3 Tu 1 . - CDS 3693 - 4709 799 ## COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases 4 4 Op 1 8/0.000 - CDS 4826 - 5518 422 ## PROTEIN SUPPORTED gi|165937309|ref|ZP_02225873.1| non-canonical purine NTP pyrophosphatase RdgB 5 4 Op 2 3/0.056 - CDS 5515 - 6279 610 ## COG0689 RNase PH 6 4 Op 3 4/0.000 - CDS 6302 - 7117 560 ## COG1234 Metal-dependent hydrolases of the beta-lactamase superfamily III 7 4 Op 4 . - CDS 7114 - 7956 634 ## COG0796 Glutamate racemase - Term 7989 - 8042 0.9 8 4 Op 5 . - CDS 8043 - 11333 1195 ## Mlut_08340 hypothetical protein 9 5 Tu 1 . + CDS 11435 - 11896 449 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 10 6 Tu 1 . - CDS 11906 - 13870 1568 ## COG2217 Cation transport ATPase 11 7 Tu 1 . - CDS 13990 - 14832 968 ## CE0409 hypothetical protein - Prom 14888 - 14947 2.1 - Term 14833 - 14871 -0.7 12 8 Tu 1 . - CDS 14974 - 16704 1506 ## COG1061 DNA or RNA helicases of superfamily II 13 9 Op 1 . - CDS 16787 - 17125 376 ## Mlut_08270 hypothetical protein 14 9 Op 2 . - CDS 17149 - 18642 1198 ## Mlut_08260 hypothetical protein - Term 18645 - 18671 0.1 15 9 Op 3 . - CDS 18741 - 19565 728 ## COG1131 ABC-type multidrug transport system, ATPase component 16 9 Op 4 . - CDS 19630 - 20586 574 ## COG3118 Thioredoxin domain-containing protein 17 10 Tu 1 . + CDS 20646 - 22034 1001 ## COG0628 Predicted permease 18 11 Tu 1 . - CDS 22069 - 22428 149 ## Mlut_08220 hypothetical protein 19 12 Tu 1 . + CDS 22562 - 23176 533 ## COG1637 Predicted nuclease of the RecB family 20 13 Op 1 . - CDS 23191 - 23520 141 ## Mlut_08200 hypothetical protein 21 13 Op 2 42/0.000 - CDS 23615 - 23890 197 ## COG0355 F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) 22 13 Op 3 42/0.000 - CDS 23897 - 25354 1401 ## COG0055 F0F1-type ATP synthase, beta subunit 23 13 Op 4 42/0.000 - CDS 25408 - 26301 862 ## COG0224 F0F1-type ATP synthase, gamma subunit 24 13 Op 5 . - CDS 26385 - 28052 1548 ## COG0056 F0F1-type ATP synthase, alpha subunit 25 14 Op 1 . + CDS 27102 - 28949 728 ## RMDY18_12870 acetylglutamate semialdehyde dehydrogenase 26 14 Op 2 . + CDS 28910 - 30700 822 ## 27 15 Op 1 . - CDS 30959 - 31393 157 ## Mlut_08110 hypothetical protein 28 15 Op 2 . - CDS 31390 - 32529 1001 ## COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase 29 16 Tu 1 . + CDS 31462 - 33516 761 ## gi|283134365|dbj|BAI65130.1| hypothetical protein 30 17 Op 1 32/0.000 - CDS 33267 - 34169 379 ## PROTEIN SUPPORTED gi|225874212|ref|YP_002755671.1| ribosomal protein L11 methyltransferase 31 17 Op 2 1/0.167 - CDS 34166 - 35275 848 ## COG0216 Protein chain release factor A 32 18 Tu 1 . - CDS 35391 - 37529 1856 ## COG1158 Transcription termination factor 33 19 Tu 1 . - CDS 37787 - 38158 114 ## COG0083 Homoserine kinase 34 20 Tu 1 . + CDS 37967 - 41194 1693 ## RMDY18_13060 homoserine dehydrogenase + Term 41423 - 41482 5.3 35 21 Op 1 4/0.000 - CDS 41353 - 42825 1289 ## COG0019 Diaminopimelate decarboxylase 36 21 Op 2 . - CDS 42834 - 44318 1454 ## COG0018 Arginyl-tRNA synthetase - Term 44542 - 44601 11.6 37 22 Op 1 5/0.000 - CDS 44620 - 45816 841 ## COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 38 22 Op 2 . - CDS 45813 - 46631 766 ## COG2022 Uncharacterized enzyme of thiazole biosynthesis 39 22 Op 3 . - CDS 46635 - 46877 170 ## Mlut_07970 thiamine biosynthesis protein ThiS 40 22 Op 4 . - CDS 46874 - 48190 917 ## COG0665 Glycine/D-amino acid oxidases (deaminating) 41 23 Tu 1 . + CDS 48012 - 48926 625 ## COG0352 Thiamine monophosphate synthase + TRNA 49013 - 49088 75.3 # Arg CCG 0 0 - Term 49084 - 49131 19.4 42 24 Tu 1 . - CDS 49285 - 50124 655 ## COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase 43 25 Tu 1 . + CDS 50198 - 51355 880 ## COG3949 Uncharacterized membrane protein 44 26 Tu 1 . + CDS 51526 - 53349 1676 ## COG0422 Thiamine biosynthesis protein ThiC 45 27 Op 1 . + CDS 53552 - 54301 244 ## PROTEIN SUPPORTED gi|157164512|ref|YP_001467500.1| 50S ribosomal protein L24 (BL23; 12 kDa DNA-binding protein; HPB12) 46 27 Op 2 . + CDS 54365 - 55780 1407 ## COG1012 NAD-dependent aldehyde dehydrogenases + Term 55847 - 55912 30.8 - Term 55837 - 55901 27.8 47 28 Op 1 . - CDS 55930 - 56487 243 ## COG1514 2'-5' RNA ligase 48 28 Op 2 . - CDS 56520 - 58154 1510 ## COG0591 Na+/proline symporter 49 29 Tu 1 . + CDS 58153 - 62355 3597 ## COG1643 HrpA-like helicases 50 30 Op 1 . - CDS 62380 - 62808 400 ## COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases 51 30 Op 2 . - CDS 62853 - 63980 572 ## COG2897 Rhodanese-related sulfurtransferase 52 31 Tu 1 . + CDS 63588 - 64538 433 ## COG0735 Fe2+/Zn2+ uptake regulation proteins 53 32 Op 1 42/0.000 - CDS 64558 - 65376 187 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 54 32 Op 2 12/0.000 - CDS 65373 - 66272 678 ## COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components 55 32 Op 3 . - CDS 66275 - 67282 784 ## COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin 56 32 Op 4 7/0.000 - CDS 67359 - 68417 919 ## COG1253 Hemolysins and related proteins containing CBS domains 57 32 Op 5 2/0.056 - CDS 68414 - 69655 1118 ## COG1253 Hemolysins and related proteins containing CBS domains - Term 69668 - 69703 1.0 58 33 Tu 1 . - CDS 69915 - 71396 1061 ## COG0516 IMP dehydrogenase/GMP reductase 59 34 Op 1 . + CDS 71597 - 75355 3320 ## COG0567 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes 60 34 Op 2 . + CDS 75432 - 76037 389 ## COG2755 Lysophospholipase L1 and related esterases + Term 76214 - 76250 11.0 - Term 76202 - 76238 11.0 61 35 Op 1 . - CDS 76293 - 76571 201 ## Mlut_07710 anti-sigma factor, TIGR02949 family 62 35 Op 2 . - CDS 76568 - 77284 648 ## COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 63 36 Op 1 4/0.000 + CDS 77491 - 78921 857 ## COG0128 5-enolpyruvylshikimate-3-phosphate synthase 64 36 Op 2 . + CDS 78921 - 80021 897 ## COG1162 Predicted GTPases 65 36 Op 3 . + CDS 80051 - 80890 746 ## COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family 66 36 Op 4 . + CDS 80890 - 81453 282 ## Mlut_07660 CrcB-like protein 67 36 Op 5 . + CDS 81450 - 81896 382 ## Mlut_07650 CrcB-like protein 68 37 Tu 1 . + CDS 82111 - 82371 95 ## + Term 82517 - 82552 -0.9 - Term 82432 - 82485 7.1 69 38 Tu 1 . - CDS 82486 - 83001 617 ## COG0691 tmRNA-binding protein 70 39 Op 1 21/0.000 - CDS 83131 - 83796 629 ## COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit 71 39 Op 2 . - CDS 83793 - 84602 848 ## COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit 72 40 Tu 1 . + CDS 84601 - 87339 1186 ## gi|289706412|ref|ZP_06502770.1| conserved domain protein 73 41 Tu 1 . - CDS 87317 - 88438 1158 ## COG1186 Protein chain release factor B 74 42 Tu 1 . + CDS 87386 - 89713 468 ## gi|139439316|ref|ZP_01772758.1| Hypothetical protein COLAER_01774 75 43 Op 1 . - CDS 89640 - 90068 332 ## Mlut_07550 hypothetical protein 76 43 Op 2 . - CDS 90052 - 90480 257 ## Mlut_07540 TadE-like protein 77 43 Op 3 . - CDS 90483 - 90689 186 ## Mlut_07530 hypothetical protein 78 43 Op 4 . - CDS 90778 - 91719 663 ## COG2064 Flp pilus assembly protein TadC 79 43 Op 5 . - CDS 91716 - 92573 630 ## Mlut_07510 Flp pilus assembly protein TadB 80 43 Op 6 . - CDS 92573 - 92998 327 ## COG4962 Flp pilus assembly protein, ATPase CpaF 81 44 Tu 1 . + CDS 92777 - 97036 1667 ## COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins 82 45 Tu 1 . - CDS 97060 - 97545 -60 ## 83 46 Tu 1 . + CDS 97727 - 98305 439 ## COG0412 Dienelactone hydrolase and related enzymes 84 47 Op 1 . - CDS 98325 - 99725 933 ## Mlut_07470 major facilitator superfamily transporter 85 47 Op 2 . - CDS 99797 - 101209 795 ## COG4894 Uncharacterized conserved protein 86 48 Tu 1 . + CDS 100520 - 102397 1632 ## COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases 87 49 Tu 1 . + CDS 102525 - 102917 327 ## Mlut_07430 transcriptional regulator 88 50 Op 1 . - CDS 103023 - 104240 920 ## Mlut_07420 hypothetical protein 89 50 Op 2 . - CDS 104337 - 105209 725 ## Mlut_07410 hypothetical protein 90 51 Op 1 25/0.000 - CDS 105335 - 106120 669 ## COG0106 Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase 91 51 Op 2 18/0.000 - CDS 106311 - 106970 480 ## COG0118 Glutamine amidotransferase 92 51 Op 3 13/0.000 - CDS 106970 - 107692 524 ## COG0131 Imidazoleglycerol-phosphate dehydratase 93 51 Op 4 . - CDS 107732 - 108853 1017 ## COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase 94 51 Op 5 . - CDS 108897 - 109271 277 ## Mlut_07340 hypothetical protein + Prom 109363 - 109422 1.7 95 52 Tu 1 . + CDS 109566 - 110282 541 ## COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases) 96 53 Tu 1 . - CDS 110331 - 112298 1586 ## COG1199 Rad3-related DNA helicases 97 54 Tu 1 . - CDS 112427 - 113731 635 ## PROTEIN SUPPORTED gi|149914878|ref|ZP_01903407.1| 30S ribosomal protein S2 98 55 Op 1 . + CDS 114255 - 115601 960 ## COG2072 Predicted flavoprotein involved in K+ transport 99 55 Op 2 . + CDS 115607 - 116254 476 ## COG2813 16S RNA G1207 methylase RsmC 100 55 Op 3 . + CDS 116283 - 117602 614 ## COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes 101 55 Op 4 . + CDS 116854 - 117297 147 ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 + Prom 117636 - 117695 1.8 102 56 Tu 1 . + CDS 117935 - 118414 206 ## Bfae_27760 hypothetical protein - Term 118295 - 118320 -0.1 103 57 Tu 1 . - CDS 118451 - 119398 805 ## COG0253 Diaminopimelate epimerase 104 58 Tu 1 . + CDS 118505 - 120472 763 ## RMDY18_14470 beta-lactamase class A 105 59 Op 1 1/0.167 - CDS 120334 - 121869 1211 ## COG0621 2-methylthioadenine synthetase 106 59 Op 2 . - CDS 121916 - 122851 536 ## COG2137 Uncharacterized protein conserved in bacteria Predicted protein(s) >gi|289556828|gb|ADCD01000080.1| GENE 1 1 - 1246 905 415 aa, chain - ## HITS:1 COG:L152588 KEGG:ns NR:ns ## COG: L152588 COG0419 # Protein_GI_number: 15673303 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA repair # Organism: Lactococcus lactis # 6 212 6 208 1046 104 30.0 3e-22 MRIHRMRLEGLGPYAQAQDVDFDRLNAAGLFLLDGPTGAGKSTVLAALCFALYGTVPGGR SAESLVTTLREPGAVIPEVQVEFTVQSRRFEVVRSPKHERPRRRRSAAGGATVTTQATVS LRERVAGEWTAPLTRADEVGQQIAAVLHLDAEQFMQVVLLPQGQFAQFLTAKSDERRALL RRLFGTQRFDGVEEHLRVETARLDTAVAVDADVARTARAQLAEALHEALGPDWHAPEPSP DTDDRLLTLAAERAGRAHEDARADLAAARAAEQRARVTVRELETRGRDLAAAEAWASRRR DHDAEAETAAARRRAVDAHERAGRVLAAAQRATAAADAAGTASEAVTEALAHVEDEPTAA SWLAAARADGATDAPASRQALGEAERAAEAVARAVRDRDRMRELEQEAAAAAERR >gi|289556828|gb|ADCD01000080.1| GENE 2 1330 - 3687 1396 785 aa, chain + ## HITS:1 COG:MA4144 KEGG:ns NR:ns ## COG: MA4144 COG1397 # Protein_GI_number: 20092937 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ADP-ribosylglycohydrolase # Organism: Methanosarcina acetivorans str.C2A # 424 744 9 278 314 61 26.0 8e-09 MVHEADRERVVRGRLPQGLGVGPLPGPPPAGRFVAEDEHGGEPGLQAFQGPLGAFVVGDG DLHPALLRPRELRGLQQVLDRPGQHRQAPPGVPVHGLDVGDGPARDVDEPAALAVARLGE GVRQRRAGVPHVLGQPLPAVQVAQGRVVKPVEHGDRHLPQRAHQHLGRGARLDVLALADV PFGLGAVAPGREQVGQHDAGHRLRRLGAAGGQIGVDAADRLRQHGRVVGRHAPGRSLVTR FEVGDAVDGHGLACAAVDPGLGEQHRAVQLRGVRAHVHARGRQESAAEAEAHRRVVVAAR EHHLGAGRVQPGERPVQQPDGVRRRQRAVVHVPGQQDGVHAALRHGRDQGVQDLLLGLEQ PGAVERPAQMPVRGVQQDHAAHSREGADGISTTPHGSYDGDMSATAPDPTASSSTPLPGP EHADRVLALLAAGAAGDALGGVVEFTPASGIAAVHGPAGVTSAADLLAQEGAHALPITDD TQLTLYVLDGLLEWIEWQNDGVPADPAACVWLACLRWFATQDGALPEGAPPAPPRWIDAH AELKVRRAPGTACLSGLAEPGMGLPGDPHNPGSKGCGTVMRSAPYGMVPGLEDPHVVSLA RQGAVLTHGHPTAWVAAAAYALIIAALLRGLDLAAAVAHARAWLDSLGEEAEETRAAVAA AVDLAGTVDADPGAPGALPTALGEGWVAEEALAIALYAALTAQAAHPADPAAALALALRI GVNHDGDSDSTASLAGQVLGAAHGTAVFGAHDPADRAAAEASVPGWIAEREVVLEAARRW SAATT >gi|289556828|gb|ADCD01000080.1| GENE 3 3693 - 4709 799 338 aa, chain - ## HITS:1 COG:Cgl2064 KEGG:ns NR:ns ## COG: Cgl2064 COG0847 # Protein_GI_number: 19553314 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases # Organism: Corynebacterium glutamicum # 7 329 149 459 467 105 30.0 1e-22 MVDRAEWLIRPPVGFDRFDPRNVRIHGITEDRVLDAPRFAQVYDELADFVGTDVLAAHNA GFDVGVIESGLEVSGRDVPGLEFVCTLVLARRVYDLPSYALPSAAREAGFTPGRHHDALA DAEACAAILVDIGRRVLGEQPADADVLPGLPAGRGVDRLMRAQGLSVSVLAPRAAGSGAE SKATRQARRTEGVFDARVPLRDERAMPDFMRWPDEGVNPLPNPAADPGHPLFGQTVVFTG GIGMSRQSAKTRAAAQGAQTANRVGAATTMLVVGDGFEAADLHRPRAEDGAPQAVATALA HRKTRDALRRRERGQAIALVSEGEFLQMLDGNWPDAAR >gi|289556828|gb|ADCD01000080.1| GENE 4 4826 - 5518 422 230 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|165937309|ref|ZP_02225873.1| non-canonical purine NTP pyrophosphatase RdgB [Yersinia pestis biovar Orientalis str. IP275] # 17 225 29 223 223 167 46 3e-40 MSGPAASSSSGAPEGARIVLATHNAGKVRELRQLLAGAVPGLDVETAVVDAGAVGAPDVV EDGVTFAQNALKKARAVAAHTGLIAVADDSGLAVDVLHGAPGIFSARWAGRHGDDRANLE LLLAQLADVPDEHRGAQFVCAAALAVPSGPDTAGARAIHVEHVEHGRLPGTLLREPVGDG GFGYDPILRPEGRDVSTAQLSPEDKNAISHRGHAFRALLPYLVDALDARP >gi|289556828|gb|ADCD01000080.1| GENE 5 5515 - 6279 610 254 aa, chain - ## HITS:1 COG:PA5334 KEGG:ns NR:ns ## COG: PA5334 COG0689 # Protein_GI_number: 15600527 # Func_class: J Translation, ribosomal structure and biogenesis # Function: RNase PH # Organism: Pseudomonas aeruginosa # 10 247 3 238 239 277 63.0 1e-74 MSSPATTAPRPDGRAVDELRPITITRGWSRQAEGSALIEFGNTRVLCTASFTEGVPRWLK GEGTGWVTAEYAMLPRATNERNQRESVKGRIGGRTHEISRLIGRSLRAVIDLSALGENTI VLDCDVLDADGGTRTAAITGAYVALAEAVAWARREGILAKGAAVLKDSVAAVSVGIVDGV PVLDLPYVEDVKAETDMNVVVTGAGEFVEVQGTAEGAPFTRAELDTLLDLALIGTGELAR IQAETLAAATEDRA >gi|289556828|gb|ADCD01000080.1| GENE 6 6302 - 7117 560 271 aa, chain - ## HITS:1 COG:Cgl2458 KEGG:ns NR:ns ## COG: Cgl2458 COG1234 # Protein_GI_number: 19553708 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily III # Organism: Corynebacterium glutamicum # 1 267 1 251 255 169 38.0 7e-42 MKLTIIGASGSFPGPGSPASCYLLTAEGVAEDGVTPRTWRILLDLGNGALGVLQRYVDLE DLDGILLSHLHPDHFMDLCGMHVAIRWNPAGWGRGRLPVYGPAGTADRIAEAYGMDPEPG MHQDFEFRCWSAGRTERLGPFRFTPVPVRHPIDEAYAIRVEVDRVDDDGGLTTRVLTYSG DTDACEGLVEAARDADMFLCEAAFHEGRDDGIDGVHLTGRRAGETAAQAGARKLLLTHLP VWNDPQRAVQEARAVYDGPLAVAVSGLSYGV >gi|289556828|gb|ADCD01000080.1| GENE 7 7114 - 7956 634 280 aa, chain - ## HITS:1 COG:Cgl2459 KEGG:ns NR:ns ## COG: Cgl2459 COG0796 # Protein_GI_number: 19553709 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glutamate racemase # Organism: Corynebacterium glutamicum # 1 250 41 283 284 273 58.0 3e-73 MDQLPHESILYVGDTEHSPYGPRPIAEVRALALAIMDELVARGVKALVIACNSASAAVLR DARERYTGGHGIPVIEVIQPAVRRAVAATRTGRIGVIGTEATVGSRAYEDSFSAAPHLEI TSVACPRFVEFVEAGITTGPELLETAREYTAPLRAAGVDTLVLGCTHYPLLTGALSLVMG EDVTLVSSAEETAKDLYRELVRLGLEHPHSAAGSGQATRHRFAATGDPDHFQALARRFLG PEVESVRRLETIGAPRPAAAPVPTRSTASVRPGAEQEGVT >gi|289556828|gb|ADCD01000080.1| GENE 8 8043 - 11333 1195 1096 aa, chain - ## HITS:1 COG:no KEGG:Mlut_08340 NR:ns ## KEGG: Mlut_08340 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 842 1096 1 255 255 412 96.0 1e-113 MRRLRGDAGAARGRTRSRGRQDGPGGLHLVERGLGGRLVDAGHQVGQHGDLVAGVEGVEH GGAHAVIRGDAHHGDRVHTLLAEPLVEAGGAGLDGGRGHGGGPVRADGPGGALARGPGRD GVGLAEGPVEAGVGVRVQALEELGVEVLDVQVGVQLGAGGAGHAVHRPGGAEVRLGTGGR REVRARVDVPVARGGHGRVGVRVLGQVLADPGRDGGAAGHAEGAALAEVVLHVHDHQGAV QVLHGSVLQEDGRDGGVARLQAAHGGGQLAQGGGVPLGGTGDGLGAGPALGQLAGVHETV QQGTVVGVGRGAAVDADHLGGGPAPRVAAARGLLAAAPAGLAGTGLGHVHPRAVVVLAGH ELVDHGGGGRAGSGDQARAHAVRADGGGAQGGDRVLVQVRGDHDPGLGVAQLVEQLAHPV GLDHEVAGVDPDVAQGRAGHLDRGAHALFHVIGVHEEGGVRSERGDLGLEGGALRVVQQG EGVRGGADGRDAVPAARLEVRGRGEARDGRGAGRGHGGLLVRAARAHLGARAAVRDRRHA GGGGGHGGVVVVDGEQVGLQDARLGEGRLHLQEGGVREVGLTLGVAHDVARELEVGEPGQ RGVVEGGGVREEVELGRVEPEAGQALQRAAHAGHHAVAAAAGQASGEQLEAGAAVRGAGL QRGLEHGQLVVVGHQRRGDLPVVGGPRGAGHGVLAHAPTLVDRRGAGPGPPASYTGAHVR ADPPRSVRAARRASGAGRVRPRRRHRHRPAGAAARGHGPGPAVERGGVERPGEPDELRRL RVPHPLRLLRGQGAAAHARGPRAGPVRGGDGHQGEGRAARGRDARLRAVGHAGAGGGLRR GMAERFRWTRRGYTAQLELPEVRLLRGLVRDVVALLEGRRADVRPAEADPTGAVAADDGV DTPEDIPAAPPSASAAEDAGPVAGLDASDAAFWGLVSGLHLSQGPEPQRSAPADPAVARL LPDAMPQAGAAEQGAHRALTEDALSEGKLADARLALELLRSTRVEVPHDQAPAFGRALND VRLVLAARLGVETEEDAARVHAVDDWRSAEDVESTMALLYNFTSWLLETLMTEMLSELPE GSDESAPGAGDAEDEQ >gi|289556828|gb|ADCD01000080.1| GENE 9 11435 - 11896 449 153 aa, chain + ## HITS:1 COG:SP0256 KEGG:ns NR:ns ## COG: SP0256 COG0454 # Protein_GI_number: 15900191 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Streptococcus pneumoniae TIGR4 # 24 131 13 120 138 84 37.0 1e-16 MTDSPIAANRDGIRYLSGAIPAADDVRTLYDAVGWSAYTADMDTLMGGLQGSATVVTAFD GGRLVGLARVVSDGHTIAYLQDILVDPGHQRRSIASELLRRVFARFGHVRQHVLLTDTEE RQRAFYEAHGFRESRDVEGDELRAFVRFQSRDG >gi|289556828|gb|ADCD01000080.1| GENE 10 11906 - 13870 1568 654 aa, chain - ## HITS:1 COG:L96595 KEGG:ns NR:ns ## COG: L96595 COG2217 # Protein_GI_number: 15672077 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Lactococcus lactis # 52 628 30 592 593 444 43.0 1e-124 MSGVAMPVSAPSPSSSRPAVLGFAARYPWVLATLVVVALTLGLHLAGAEDPARWIASAYA LVVAAWTSVGMVRDLMRGHWGVDVLAVTAIVATVLVGEHLAAVLVCLMLTGGEALEDYAA GRARRDLSALLDRAPQRAHRLRPDGSVEDVPVEEVRAGDRLLMRPAEVLPVDGTVASAED GGEVAVDLDESSLTGESLPMTHRTGSAVMSGALNGTRAFVLEATASAADSQYTAIVSLVQ QAAESRAPMVRLADRYAVPFTAVAYLIAGLAWWLSQDPVRFAEVLVVATPCPLLIAAPVA FLGGMSRAATSGVIVKSGGTIEALGSVQTVGFDKTGTLTAGRPELVGVRPAAGFAQDELL RLAASAEQYSVHVLADAIRAAAEERGVSLAAAQDATEEATHGVVAVLEGRRVVVGKRAYV TQAAPDTVTADLAPGQSAVYVAVDGAFAGVLLLADRIRPESAATVQALHRLGARQVLMLT GDAEATGRHIAGEAGIDEVHADLLPADKVRLLSERPERPVMMVGDGVNDVPVLAAADVGV AMGARGSTAASESADVVVLADDVSKVAVAVAAGQRTLQVATQSIWVGIALSLVLMVIAAS GAIPALVGALFQELVDVVAIVNALRAMKPGPHEAERLGDLAAAPARGERQAVPA >gi|289556828|gb|ADCD01000080.1| GENE 11 13990 - 14832 968 280 aa, chain - ## HITS:1 COG:no KEGG:CE0409 NR:ns ## KEGG: CE0409 # Name: not_defined # Def: hypothetical protein # Organism: C.efficiens # Pathway: not_defined # 3 221 78 297 353 99 30.0 2e-19 MPRRSSVKYLLIYRGIPTFSVTVLALNLAVESGGDPYWTSAFVFWTYSTLAEIRSTFSPK GALRQLSTVNTVYLSASVVVTTIYCSVAVLVYPHFSVLVPSVRELVIALWTALFASVLAI SFQRFNTRSGPDVQMEIDYSIKDIGQKTWSQIDSICMRENIDPCLIKALAAAEAQQRPRW IRQAERVAGRLFGGGTFGVGQWPSSRPIDDLTSIEFRAKQLAPVGLTPHECDIAEVYDFL DIDYFIYSWNSDESFADSARGFYSAFRRAKMVEHVAESDA >gi|289556828|gb|ADCD01000080.1| GENE 12 14974 - 16704 1506 576 aa, chain - ## HITS:1 COG:MT2985 KEGG:ns NR:ns ## COG: MT2985 COG1061 # Protein_GI_number: 15842460 # Func_class: K Transcription; L Replication, recombination and repair # Function: DNA or RNA helicases of superfamily II # Organism: Mycobacterium tuberculosis CDC1551 # 11 569 39 595 602 579 56.0 1e-165 MPERAAWGTAPKLRQWQQEALERYLETAPQDFLTVATPGAGKTTFALRVAKILMDSGVVQ RLTVVAPTDHLKRQWADNAARVGIAIDPNFKNADGRHGAEYRGVALTYAQVANKPVLHRN RTEAAKTLVILDEIHHGGDALSWGEGIREAFEPATRRLSLTGTPFRSDTAAIPFVRYELG ADGIERSKADYTYGYGPALRDHVVRPVIFMAYSGQMRWKTSTGEVMEAQLGEAATKDITA YAWRTALDPAGEWIPSVLRAADRRLSEVRRNVPDAGGLVIATDHQDARAYAAQLEALTGQ RPAVILSDDKGASDRIEEFAASDERWMVAVRMVSEGVDVPRLCVGVYATSTSTPLFFAQA VGRFVRSRRRGETASVFLPSVPALMLLANEMELERDHALDRKEGAVDVEDLEDAPEEDLI AEANRAESGSDALTREKFEALESRASFDKVLFDGGEFGLGGAVGSEEEQDFLGIPGLLDA EQVSALLRQRQAEQIQRRPRAQAAQPADVVDHRRMKELRSELSKTVSAWAARSGQPHGVI HNRLREISGGPAVAQASRAQLEKRLSTLRGWFVGRT >gi|289556828|gb|ADCD01000080.1| GENE 13 16787 - 17125 376 112 aa, chain - ## HITS:1 COG:no KEGG:Mlut_08270 NR:ns ## KEGG: Mlut_08270 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 93 1 93 114 178 100.0 5e-44 MSVTGEPDLNDPFAPAGGGTSVLEREELRQEIEPGDHERFAHYVRKEKITESAVTGAPVI ALCGKVWVPGRDPNKFPVCPTCKEIYEGLREPQDGGDGGGKRGGWFGGRGRG >gi|289556828|gb|ADCD01000080.1| GENE 14 17149 - 18642 1198 497 aa, chain - ## HITS:1 COG:no KEGG:Mlut_08260 NR:ns ## KEGG: Mlut_08260 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 497 37 533 533 594 95.0 1e-168 MAAVAVTLLVTGLPALPDEARGATTVLVAAVVVLGWLIFPPFVTGVDATLDPHSFVLFPV PARTLIAGLVLSAFTTPVGLATLAVLVGLGASWWDRPAVLAAGLAGGALTAVTAVAIGSG LAGLLAAYASRRRVRDVVSVLLFIPLMLGGLALSRAIASFEDFLAIAPQVARGAAWTPFG AGPAAAWAAAEGRGAAVALHLAVAAAWCLAALALWHLAVRRTVEPVAAGGGRSRRVAAGA DPMPLRWLGRPATGPRTAIAARAQRYWLADPRYAAGLVIIPLTAVLLWFTGGMAAEGGPG LGLLLVLGPITAWSLAYSISADIAYDHTAFHLHVVSGVRGVDDRWGRVLGLAGWGVPMIL LVTTATVAAAGDWSLLAPMLGLALGLFGTTAGLSAFISARFVYPVPKPGDSPFKTPQGAA MRTMLVQGAAMLVSLALAVPFLVPFVVRLVTGAAVWGWVTVALGLVWGAVALWLGVRLGA RWYDRAQAETYQAVAAF >gi|289556828|gb|ADCD01000080.1| GENE 15 18741 - 19565 728 274 aa, chain - ## HITS:1 COG:Cgl1972 KEGG:ns NR:ns ## COG: Cgl1972 COG1131 # Protein_GI_number: 19553222 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Corynebacterium glutamicum # 30 274 22 267 285 269 55.0 3e-72 MTPHASEPAPTHLAAAARRRAADAPDPDLALVTRGLTQRFGDKLALDALDLDVPAGSFFG VVGPNGAGKTTALSMATGLLRPDHGRAWIHGVDVWEQPREAKRRVGVLADGVRTFDRLTG AQLVTYAGLLHGLDADTVAERTADLLRVMDLEDAGRTLVADYSAGMTKKVSLAAAMVHAP DLLVLDEPFEAVDPVSAANIRDILHSYVERGGTVIVSSHVMDLVQRMCTHVAVIAAGTLR AAGTLEEVRDGRDLEDRFVDLVGGRHGSEGLAWL >gi|289556828|gb|ADCD01000080.1| GENE 16 19630 - 20586 574 318 aa, chain - ## HITS:1 COG:Cgl1191 KEGG:ns NR:ns ## COG: Cgl1191 COG3118 # Protein_GI_number: 19552441 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Thioredoxin domain-containing protein # Organism: Corynebacterium glutamicum # 15 318 10 307 307 82 27.0 1e-15 MTAQPPSDAPSHLRGAVDLSSLGTPASAGRTAPGADAGAGGGSWVIADADQGLLQQLVQL SAQVPVLLHLHVPGDAASEALYRQFADAVDAQAGRLVLARLDVAKEPAVLQALGLGAGPA VMAVVAGQPVPLVNQEVPEETLRQLMGEILEVARQNGVAGTVPAVAPARQDAGAAAAEAP PVPPLHRAAHEALAADDLPGAVSAWEAALADSPADAVAQQGLSAARLMLRTRDVDAAAVR AAAADGPDDVAAQLAVADLDVLGGHVEDAFARLVRFIALHPGDDRETARAHLVDLYTVVG TDDPRVQASRRRLAAALF >gi|289556828|gb|ADCD01000080.1| GENE 17 20646 - 22034 1001 462 aa, chain + ## HITS:1 COG:SA1192 KEGG:ns NR:ns ## COG: SA1192 COG0628 # Protein_GI_number: 15926939 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Staphylococcus aureus N315 # 154 455 63 374 402 106 23.0 1e-22 MGPTVAARARRGQSGALTYAERVEEKETASGPDATGVADVRAPAEPEGAEQPPVAGVPAQ PVEVAAAPPSHGPTPAGRRRLLRLGSILRRRRPFLAEDRVDPESAPADGAEDRAVAAVAV ESPVLTGFLLAVGVALAIGVVSVLRTNGQLIVWIAAALFIALGLDPLVRRVESWGAPRWV GVLTAALGLAAVAGAFVALLVPTVIEQSTQLVQDLPAIIDGVMRAEWFVQLDEEFHLQEA VRAQTERLAADGAAVTDLFGGLLGFGQTVLNAVFSVLVVVVLTLYFLSSLPHMKYWAYRL APRSRRPRIEALSEQITSSVGHYVMGQSFVAALNGAVAFTALAIAGAPFAVLLAAIAAFM AFIPLVGAAIGGTLLTLVSLLTSWQTAAVFAAIYFVYLQIEAYVISPRVMARAVSVPAAV AVIAVIAGGALLGVLGALMAIPLAAALALVVREVFIPRQDAR >gi|289556828|gb|ADCD01000080.1| GENE 18 22069 - 22428 149 119 aa, chain - ## HITS:1 COG:no KEGG:Mlut_08220 NR:ns ## KEGG: Mlut_08220 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 119 1 119 119 179 94.0 3e-44 MPRSNRPRRSSAPRRSERGASGASRRSRPSPGRADPLEELLGLDPAYSRQSGSDGGWHVR QIPAWRAVKDYTCPGCGRVIRQGQAHLVAWRADWIMGDEDAGADRRHWHPVCWRTRPGR >gi|289556828|gb|ADCD01000080.1| GENE 19 22562 - 23176 533 204 aa, chain + ## HITS:1 COG:MT1363 KEGG:ns NR:ns ## COG: MT1363 COG1637 # Protein_GI_number: 15840774 # Func_class: L Replication, recombination and repair # Function: Predicted nuclease of the RecB family # Organism: Mycobacterium tuberculosis CDC1551 # 1 204 31 226 226 263 68.0 1e-70 MVKADGSVLVHSDGGSYKPLNWMSPPATLHVEEPSPDQADQGVTQVWRVQAKKSDDRLIV LIEEVLADDSHELGVDPGLVKDGVEADLQRLLAEQISLLGDGHTLVRREYMTAIGPVDIL ARDADGGTVAVELKRRGDIDGVEQLTRYLELMNRDPLLAPVRGVFAAQQIKPQARTLAED RGIRCVTLDYDAMRGVDDAESRLF >gi|289556828|gb|ADCD01000080.1| GENE 20 23191 - 23520 141 109 aa, chain - ## HITS:1 COG:no KEGG:Mlut_08200 NR:ns ## KEGG: Mlut_08200 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 109 25 133 133 164 99.0 1e-39 MRRRALARVTAAFPAVLEREGPGRERVIGVYDESRLRLTGPWRLSRERWSADRSRLQIDR LPADEAGRTVLELSAGARPVRVVVDPDDAGALRAWSEAGPSAASSFWRR >gi|289556828|gb|ADCD01000080.1| GENE 21 23615 - 23890 197 91 aa, chain - ## HITS:1 COG:ML1146 KEGG:ns NR:ns ## COG: ML1146 COG0355 # Protein_GI_number: 15827577 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) # Organism: Mycobacterium leprae # 1 85 1 86 121 64 46.0 3e-11 MAELNVEIVSEERSIWSGAASAVSARTVNGEIGILPGHTPMLAVLGDGEVVVRTTDGGTV TAQAHGGFFSVDHDRVVIAATSARLGDAAAA >gi|289556828|gb|ADCD01000080.1| GENE 22 23897 - 25354 1401 485 aa, chain - ## HITS:1 COG:MT1350 KEGG:ns NR:ns ## COG: MT1350 COG0055 # Protein_GI_number: 15840761 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, beta subunit # Organism: Mycobacterium tuberculosis CDC1551 # 2 484 4 485 486 666 70.0 0 MTATITDQGTGTPTGGATGRVSRVIGPVIDAEFPANAMPEIYNALTTEIDLNGQRRTVTF EVAQHLGDNMVRAISLQSTDGLVRGTDVVDTGAPISVPVGDAVKGHIFNVLGETLDMPSS QLQAEDRWPIHRPAPNFASLEGSTEMLETGIKVIDLLTPYIKGGKIGLFGGAGVGKTVLI QEMITRVARNFGGTSVFAGVGERTREGNDLWVEMDEADVLKDTALVFGQMDEPPGTRLRV ALSALTMAEYFRDVQNQDVLLFIDNIFRFSQAGSEVSTLLGRMPSAVGYQPNLADEMGVL QERITSTRGHSITSMQAVYVPADDYTDPAPANVFAHLDATTNLTRDLASRGLYPAVDPLA STSRILDPQYVGQDHYDVAIRVKQILQKNKELQDIIAILGVDELSEEDKITVGRARKIEQ FLSQNTYTAKQFTGVEGSTVPVKDTVEGFKAIADGDLDHVAEQAFYNVGGLDDVEREWAK IQAEG >gi|289556828|gb|ADCD01000080.1| GENE 23 25408 - 26301 862 297 aa, chain - ## HITS:1 COG:MT1349 KEGG:ns NR:ns ## COG: MT1349 COG0224 # Protein_GI_number: 15840760 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, gamma subunit # Organism: Mycobacterium tuberculosis CDC1551 # 1 294 1 301 305 253 47.0 2e-67 MGAQIRVYRQKIASTSSMKKIFKAMELIATSRITKARERVSASLPYANAITRAVSAVSSQ HDIDHVLTTEPENPTRAAVLIMSSDRGLAGAYSANVLRKAEQLLTRLGEEGKDVDVYVVG RKAQTYFDFRGRDYKQLWTGQTDAPVAERASEIGEVLVDAFLTDTADGGVDEIHVVFTEF VSLVKQNPHVVRLLPLEVVEEEAATAEEVLPLYEYEPDAGEVLDALLPKYIESRIFNTML QSAASELANRQRAMKSAGDNATSLIKDYTLLMNNARQAEITQELTELIAGADALNNS >gi|289556828|gb|ADCD01000080.1| GENE 24 26385 - 28052 1548 555 aa, chain - ## HITS:1 COG:MT1348 KEGG:ns NR:ns ## COG: MT1348 COG0056 # Protein_GI_number: 15840759 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, alpha subunit # Organism: Mycobacterium tuberculosis CDC1551 # 12 548 1 536 549 706 67.0 0 MITKHREQGLQMAELTINADDVRNALNDFAASYEPSGTDRTEVGRVISAADGIARVEGLP SVMANELLRFENGIQGLAQNLDTREIGVVVLGEFQEIREGMEVQRTGEILSVPVGDAFLG RVVDPLGQPIDDLGPIEAEGRRALELQAPTVTERKSVHEPLQTGMKAIDAMIPIGRGQRQ LIIGDRQTGKTAIAVDTILNQKANWESGDVEKQVRCVYVAVGQKASTIAGVRATLEEHGA LEYTTIVASPASDPAGFKYLAPYAGSAIGQHWMYGGKHVLIIFDDLSKQAEAYRAVSLLL RRPPGREAYPGDVFYLHSRLLERCAKLSDEMGAGSMTGLPIIETKANDVSAYIPTNVISI TDGQIFLQSDLFNANQRPAVDVGISVSRVGGAAQVKAMKKVSGTLKLDLAQYRDQQAFSM FASDLDPATRRQLARGERLMELLKQPQYSPYPVEEQVVSIWAGSKGHLDEVPVQDVLRFE REFIDHLRRHTSVLTDIASTGKLEDGTVSALESAVAEFSKGFQSSEDGGVQAGHEEHRAI EQDQVAQEQITKQKR >gi|289556828|gb|ADCD01000080.1| GENE 25 27102 - 28949 728 615 aa, chain + ## HITS:1 COG:no KEGG:RMDY18_12870 NR:ns ## KEGG: RMDY18_12870 # Name: not_defined # Def: acetylglutamate semialdehyde dehydrogenase # Organism: R.mucilaginosa # Pathway: not_defined # 1 315 222 536 550 271 54.0 7e-71 MQVEDVARVGLAARRAAQQQGDGTVGLGLLRQVVEDDQHVLAAVHPVLADGRAGVGGEVL EAGRVGRRGGHDGGVLQGAVLLQRGADAGDGGGLLAHGHVDAADLLLDVARLPVGLLVED RVDGDRGLAGLAVTDDQLTLATADRDHGVDGLHAGLQRLVDRLALGHGRRLQLEGTAALG LDRAQVVDGLAQRVHHAAQEGVAHRDGEDLAGALHLHALADLLELAEDDDTDLAGVEVLG QALDAVLEAQQLVRHDGGQTLHTSDAVRRGDDTADLGAIGARRFVRCREIVQGIADIVSV DGQFGHLQSLLSVLGDHRRDDDAYVRGCSGCGREPASAGHPPLEVVEARGHGPVDDVVAD LDADATHHVGVHRHVHDEIAAEGAAQAQGQPLLLLGLERPGHGHLGDPLALPLGDDVRGL ADGGGRLQAARSRDGALDQQSAGRAGRLAQETTGQSGPRLEGCVLIGERPLHLVRVLHRA VEGQQLAREGGQARVSAACGLRGGRVRGHRLEGVPEIALRRPAAAGQVLEDLQCTGGHPG AEQRVDEAVTALGGPGGVGQGAAQGAVLVHHVQRAEQLACQGHAALVQHRTDGLQGGGQG VPRCARHHSATPALW >gi|289556828|gb|ADCD01000080.1| GENE 26 28910 - 30700 822 596 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MRPSSFGDTCALVTVQVSQEAVDHALRAGVVLEGLAHDLAGQGRGQRADLALELRGGLLT LGGDLRLRLLGDARRLGGRALARLGHDLGGLGAGILADAVRLGAGVRQLRLVVRHHRVRL GLGLLSLGQTALDRLDTVLVGLLEGRDDELDDDEHEQGEAHHDDEDLPRVGDQGVGPLSR REDQSVADHVSTILRSRVLWRGSTDGLTVRALRGRGASGADDEGEDEAQDGEGLGEREAQ EGDRLQDALGLRLTGDAVDVGGEDQAHADGGADGGEAVADHVERTVQFHGVPFTRPRCPA GLWRVGLPGGPPAEGREDWWRALPPYRGRLGRARGGPGRSVVVRVDRALDVDRGQQREDE GLQVHDQQLEEVQGHRAEDDQDAGALQGQAAGLRDQVGGAGAGEHHDHVAGEHGGHQTQG VGQGAHDEVGDDLQRHEQRQDPAGHTGGHDGQLQVAHAVALDADADPDRVDDEGQAVGGA RVGEGRQLQHRDGAEQVVQQHEEEDGEEQRHPLLEVLLAQDVLRDVVPDEGVAGLGEPLG LAGHEPGTAHGPREEGGDEHHGEQDEQHLLAEAGAVLRTPGEDLREVTIRDGGGHE >gi|289556828|gb|ADCD01000080.1| GENE 27 30959 - 31393 157 144 aa, chain - ## HITS:1 COG:no KEGG:Mlut_08110 NR:ns ## KEGG: Mlut_08110 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 21 144 21 144 144 148 93.0 6e-35 MTGAGGRRRRRRWENRRGWWGILGWSLAAAGAALAITCAAWLLSAGGEAAGSALLGGGAV LALSALTGVTTALVWDRAREAALPVSVGLFVLKIAVFAVLLGVLPRPDWVRPDAAAIAAL VTILVWQAAEVLVFARTRRGIYAD >gi|289556828|gb|ADCD01000080.1| GENE 28 31390 - 32529 1001 379 aa, chain - ## HITS:1 COG:Cgl1177 KEGG:ns NR:ns ## COG: Cgl1177 COG0472 # Protein_GI_number: 19552427 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase # Organism: Corynebacterium glutamicum # 5 368 13 382 382 186 37.0 5e-47 MRAYLVLVVVTAVACGALTPLMRRLGLRARVFTPLRQRDVHRHPVPKLGGVAMAAAVLVG FAVGGVVPFLQGIYADDAAMRGLLVAVAVVLVVGIADDMWDLRWWVKMAGQVLAGLAVAL GGIRIEAMPVGWIPVGNETTQVILTVFAVVLTMNAINFVDGLDGLAAGVALIGGSAFFVY SYLLTRTINQFDYANLATLLMALLVGACVGFLPWNLAPARIFMGEVGAMIIGLLMAAAAV AVTADVNALDGMRFRNVPAYMPILLPVAVLALPLTDLALAVLRRTAKGTSPFSADRGHLH HKLVDGGYTQAQAVALLWLWAFLVAWGAVSLNFVDHRIVLPVLAVALAGAGYLTLHPIVE RRRAVRNDAAAHPDERGDA >gi|289556828|gb|ADCD01000080.1| GENE 29 31462 - 33516 761 684 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|283134365|dbj|BAI65130.1| ## NR: gi|283134365|dbj|BAI65130.1| hypothetical protein [Rothia mucilaginosa DY-18] # 428 586 237 395 450 77 33.0 3e-12 MQGEVAGSGQGHGEHGQDDPVVHEVQGHRAPGHEERPEPEQRDGLRLGVAAVHELVVQVP AVRREGAGALGRPPQHGQGEVRERQCEDGDGQQDRHVGGDVAEAHPVQGVHVRGHGDRGR GHQQADDHGPHLAHEDAGRGQVPRQEAHARADEQGHEQGGEVGVVELVDGPRQQIRVDEE GRAADQRDARRQAVQTVHEVDRVHRQHHGEHREDDLRGLVPHRDPAHRHRLDADPAQGHR EPGQHLAGHLHPPAQVPHVVGDAHDEHDGDGDQEPAHRGVVRVDPLEERHDSPDGESHQH GRGHGHAAQLRHGVPVHVPLAQRGEHARAQPQPAHEGRQGPAGDGRDHDQDEIRAHGGRS GLPVGGTRRGGVVGRDPLGGDRRLLALGEQVRHHRAQLLQGHGALPGHAERGDGAVHDRR GIPALAGAGVEVEGHGLPQHRAGGVGGGGGVHAGAVRAGDGHGADGVEQLAGHRVVRHAQ GDGAAGLAEVPGQRGLGLEDEREGAGPEALGEGFGLLRHVVREARHDAAVRDEHGRRHGA AAALGGQQHGHGQRGERVRSDAVDGVRGQDHAAAVREDLAGAGHGILEGGRIRDVDEVTH VGHSSTSAPAAASQDRRAVRNRSRPVRSWCTRTPVNRGSAPRAARSAGPCVSWCSMAKRP PGASRSAARCAMARGTRSPGASPP >gi|289556828|gb|ADCD01000080.1| GENE 30 33267 - 34169 379 300 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|225874212|ref|YP_002755671.1| ribosomal protein L11 methyltransferase [Acidobacterium capsulatum ATCC 51196] # 4 291 17 293 294 150 41 3e-35 MSAPAWSALLRDAAARLTAAGIDSPRVDAELLLAHVLGLDRGALLARVFAGAVAEPAQAA AFEALVGRRAAREPVQHLTGVAHFHGLDLAVGPGVFIPRPETELLVETVVADLAARPTAD VVVDLCTGSGAIAAAVAAWGEARGRPLAVAAVELDPTAADWARRNLALRGVDLRQGDALV ACPDLEGRVDVVVSNPPYVPEAEVPAQPEARLDPARALYGGDAPGLRVPRAIAHRAADLL APGGLFAMEHHETQGPALLAALGADPRFTGVRVHQDLTGRDRFLTARRSCDAAAGAEVEE >gi|289556828|gb|ADCD01000080.1| GENE 31 34166 - 35275 848 369 aa, chain - ## HITS:1 COG:MT1338 KEGG:ns NR:ns ## COG: MT1338 COG0216 # Protein_GI_number: 15840749 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor A # Organism: Mycobacterium tuberculosis CDC1551 # 6 362 3 354 357 369 60.0 1e-102 MFDSEQRREAVDRLLAEHRELTARLSDPAVHQDPALARRLNRRFAELGAVVTAHRAWSAA VEELADARELAAAGDDDAAAFAAEVPGLEAAEAEAAERLRRLLIPRDPDDARDVILEIKG GEGGEEAALFAGDLLRMYLRYAESRGWKTEVLSATHSDLGGYKDVHVAVRGSAADPADGV YARLKFEGGVHRVQRVPVTESQGRIHTSAAGVLVLPEVDAPDEVHLDPNDLKVDVFRSSG PGGQSVNTTDSAVRLTHLPTGIVVSMQNEKSQIQNREAALRVLRSRLLERQRAEQDAEDS AARAAQVRTMDRSERIRTYNFPENRIADHRTGYKAHNLDAVLDGDLEAVIASCLALDEER RLAALGADA >gi|289556828|gb|ADCD01000080.1| GENE 32 35391 - 37529 1856 712 aa, chain - ## HITS:1 COG:ML1132_2 KEGG:ns NR:ns ## COG: ML1132_2 COG1158 # Protein_GI_number: 15827563 # Func_class: K Transcription # Function: Transcription termination factor # Organism: Mycobacterium leprae # 318 712 53 441 441 508 72.0 1e-143 MHTAARRATRRRAAFEGEGTFVTESTEQTTPTNGGGLASLKLAQLQALASQLGIAGGSRM RKADLVTAISDHQRGGSVADRDAAERAAQATAAPAAEAAPAAASSQDAAPAAERPARRRS RRADADTSAPAAAAQDGQPQAEAREDQTEQAPRETASDQDRSGGSEARDEGEDRPQSERR SRGRRRAGDDDAQQGQDRRSDGAQGEDGADRRGDREDRDDNGRENGRGRNSRNGRDRDNG RDRENGRENNRDRENGRDGSREQRGDKSEDGGRGDGGRGDRSRRDDRDDEGGRNRRNRRN RNERGRNRRGRGGPEVDETELTEDDVLQPVAGILDVLDNYAFVRTSGYLPGPNDVYVSLA MVKKYGLRKGDAVVGAIRAPRDGEKQQHHGGGSNRQKFNALVKISSVNGQPAVEHPQRVE FGKLVPLYPQERLRLETDPKLIGPRVIDLVSPIGKGQRGLIVSPPKAGKTMILQSIANAI KTNNPEVHLMMVLVDERPEEVTDMQRSVDGEVIASTFDRPADDHTTLAELAIERAKRLVE MGRDVVVLLDSMTRLGRAYNLAAPASGRILSGGVDSSALYPPKKFFGAARNIENGGSLTI LATALVETGSRMDEVIFEEFKGTGNMELRLSRHLAERRIFPAVDVNASGTRREEALLSQE EVKIMWKLRRVLSGLEQQQALDLLTNKIKDTASNAEFLMLVSKTTLGSKGDD >gi|289556828|gb|ADCD01000080.1| GENE 33 37787 - 38158 114 123 aa, chain - ## HITS:1 COG:ML1131 KEGG:ns NR:ns ## COG: ML1131 COG0083 # Protein_GI_number: 15827562 # Func_class: E Amino acid transport and metabolism # Function: Homoserine kinase # Organism: Mycobacterium leprae # 1 104 198 308 315 63 44.0 7e-11 MLPAEVPHAVAAAQAGRAALLVHALAEDPALLLAATRDWLHQEPRAVTMPASSALVAGLR GRGHAAVVSGAGPTVLALCDGVQAAEHAAEAARALTADGAAAWRVLVPCVAVDGVRVESL HHG >gi|289556828|gb|ADCD01000080.1| GENE 34 37967 - 41194 1693 1075 aa, chain + ## HITS:1 COG:no KEGG:RMDY18_13060 NR:ns ## KEGG: RMDY18_13060 # Name: not_defined # Def: homoserine dehydrogenase # Organism: R.mucilaginosa # Pathway: not_defined # 250 630 19 395 422 220 41.0 2e-55 MAAPAQPRDQCGAGRHGHGARLLMQPVPRGGQQQRGVLRQRVDEQRGTAGLGRRHRVGHL GGQHAPGDVGGQLDVRDRDHRHHALVQPQRRRGRAGHVVTGPGDGGPAHERGGDVVRVPL EAGGRLEQVRGRPAQRGRQQGLRRGVGRDDGGRGRAEPAGVRDPVHGAQVQPRRGEPAVP QVLVRQAQDQVRAVPRQGGRALPLDLRDVGARHDRERHLVAQLQGQAHRVEAGAEVGGGG GDGDGRGGPGRQRLRCGHGSAQAERLGDGDHVERHRARGHVGAVGAAQGPLRVLEAVAGD GDDPALAGRHVPGGVVLEQPGDAGGGGGLDEHALLRGEPAVSLEDLLVRDGVDHAAGLVA GGLGLLPRGRVADPDGGGDRVRVGHGVALDDRGGARGLEAPHHGGLRGHRGQLGVRGALV RVHVGGGVLAVALPVRGDVAGVAHGQQVVVRGVAEGVHDLECAGLLPLDAGRVDGVHEEH GVVLGELAGHLEAVVEVALHLEDLRAVGHGLGHLAHRDLPLGHEHGARDPGLRGVGRRRG GRIAGGCADDGLRAVRDGGGDRHGHAAVLEGAGRVHALELHVHGALHQLGEVGGVDERGA ALAEGDHARVLGDGQAVGVLADDAAPLVGHGSVPFDSEDGRDLVDDVQGGERLDGGVEVA LPRTVGDQPQGRAGGVLALGRDLAQRLDGDAVLLEHPGDAAQHAGLVRRAQHDHEGGVGL GRVQGGQGGDGGAQACRAAAHDALGDRDDVAHHRGRGGGAAGAGTVEHELAGVLGLHEDG VERPAHGGQRVLPRQQGGVHAQDRALGAVGGAAALGDRQQLDDVARLRGGGVVLRRDRGD ARDGHLVQGVRRAERDGRQDRGLRGGVVALDVGGRVGLGVAEPLGLGEGVVEVRPFGVHP VEDEVGGAVGDAHHAGDAVAAQGVAQRAQDRDGAGDGGLEAELRAGGGGRGVQLLAVLGQ QRLVAGHHGRAGGQGAQDQGAGRLDAAHQLDDDVGAVHERLGVGGVERRVRLPVARRARV PHRDARELEVGAHAVPQDVGVLGEDPGGLGPHGPAAQQGDLECGGGVGVLGHGPP >gi|289556828|gb|ADCD01000080.1| GENE 35 41353 - 42825 1289 490 aa, chain - ## HITS:1 COG:MT1332 KEGG:ns NR:ns ## COG: MT1332 COG0019 # Protein_GI_number: 15840743 # Func_class: E Amino acid transport and metabolism # Function: Diaminopimelate decarboxylase # Organism: Mycobacterium tuberculosis CDC1551 # 26 483 7 445 447 394 50.0 1e-109 MTTPQPAPASPLAPAWLPAPGDPDALVPGLWAAGVDRAADGELTVQGLRASALAAEFGTP LLVVDEDDFRARARAFREGFDAAFADLCGGADVYYAGKSMLTLSTARWAAEEGLRVDTAS GGELAIALAAGVDPAHIGLHGNNKSDAELRTALEAGVGRIIVDSLDELTHLAALASEAGR RAPVMLRLTPGVHAHTHDFIATAHEDQKFGLSLAPASTDRDGNVAGRSPAAVAVAAALAA ESIELLGVHCHIGSQIFEAEGFGLAAGRVLEFLAEVKAEHGVELAELDLGGGHGIAYTAV DEPRPAAEIADALADDVQKTVERLGLTCPRISLEPGRAISGPAGLTLYTVGVTKTVDVDA PDGGTAARRYVAVDGGMSDNPRPVLYDADYTAVSARRTSEAEPLLSRVVGKHCESGDILV RDVYLPADLGRGDLLAVPATGAYTHVMSSNYNALARPAVVAVSGGQARVIIRRETQEDLF AREADPRLAR >gi|289556828|gb|ADCD01000080.1| GENE 36 42834 - 44318 1454 494 aa, chain - ## HITS:1 COG:MT1331 KEGG:ns NR:ns ## COG: MT1331 COG0018 # Protein_GI_number: 15840742 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Arginyl-tRNA synthetase # Organism: Mycobacterium tuberculosis CDC1551 # 3 494 61 550 550 454 50.0 1e-127 MAPRDLAGLVAERLTGKPGIAAVDVAGPGFLNVTLDAASAGALAREIVEAGPEYGRNDAL AGHTVNMEFVSANPTGPLHIGHTRWAALGDAIARLLRASGADVTAEYYVNDAGNQMNVFA DSVLARLHGRDVPAGGYPGAYVQELADAVALEHPDVRELTDEAARPVVREAAYRLQMQDI KDTLAAFDVHFDVFTSEQTLHDSGAIEQAVQRLREQGHIEDREGAVWLKTTDFGDDKDRV LIRANGEPTYFAADAAYYLHKRDRGFEEKVYLLGADHHGYVNRLKAIAAAAGDDPATNIE ILIGQLISVNGAKLSKRAGNIIELKDLVEWLGRDALRYDLARYPADSPLTIDPELLRSAT NDNPVYYVQYAHARASGAARTAQAHGVDRSEFDAALLTHATESELLAQLAEFPAVVGAAA RLREPHRVARHLEVIAGAYHSWYAACRIVPMPTDDGTPRPVETLNRTRLWLNDATAQVLA NGLGLLGVSAPEKM >gi|289556828|gb|ADCD01000080.1| GENE 37 44620 - 45816 841 398 aa, chain - ## HITS:1 COG:aq_1329 KEGG:ns NR:ns ## COG: aq_1329 COG0476 # Protein_GI_number: 15606532 # Func_class: H Coenzyme transport and metabolism # Function: Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 # Organism: Aquifex aeolicus # 18 259 4 249 271 245 49.0 9e-65 MTAALGSAARDPRDLTALSDTQLQRFARHLSLDGFGPEAQLALLRSRVLVVGAGGLGAPV LTYLAAAGVGEVHVIDDDVVDRSNLHRQVIHAEADLGRPKTASAAATMRGLHPEVRVVEH RERLTAANALERVGAVDLVLDGTDNYATRYLVADACEIAGVPVVWGAILRFAGQVSVFAP GGPLYRDVFPERPEPGEVPSCAQAGVLGVLPGIVGSLMAAEAIKLLSGVGETLAGRLLSV DALTMRFRELRLVADPERPPVTDLSAHAAQAPRPDDAGAPGSAEACGAAGGEIAPTALAA LLADPARAASLTLLDVREDWERRLRRVEAPAAVADRHVPLEAVLAEPAAHAPGQDRVLVV YCAAGARSARARDAVVGADPSAGGRVLSLAGGLAAWPA >gi|289556828|gb|ADCD01000080.1| GENE 38 45813 - 46631 766 272 aa, chain - ## HITS:1 COG:Cgl1993 KEGG:ns NR:ns ## COG: Cgl1993 COG2022 # Protein_GI_number: 19553243 # Func_class: H Coenzyme transport and metabolism # Function: Uncharacterized enzyme of thiazole biosynthesis # Organism: Corynebacterium glutamicum # 16 269 2 257 260 262 64.0 6e-70 MAEHRTPPAAPAIPPLRIGGYDLASRLIMGTGGITDLTALEGALVASGTTLTTVALRRWS ADTRDGLVALLDRLGIDVLPNTAGCYTARDAVLTARLGREALETELVKVEVIADERTLLP DVVETLEATERLAADGFTVLAYTSDDPAMALRLEQAGAAAVMPLGSPIGSGLGILNRAHL ELIVSRASVPIVLDAGVGTASDVALAMEAGCDAVLAASAITRAAEPARMAHACRLALEAG FHARRAGRIPRREHALASSPMAGRVTAEEDER >gi|289556828|gb|ADCD01000080.1| GENE 39 46635 - 46877 170 80 aa, chain - ## HITS:1 COG:no KEGG:Mlut_07970 NR:ns ## KEGG: Mlut_07970 # Name: not_defined # Def: thiamine biosynthesis protein ThiS # Organism: M.luteus # Pathway: not_defined # 1 80 1 80 80 87 96.0 1e-16 MSTLTLTLNGEPAELAAATVRDVVAHVTGRAVGDDGAAADGRRLGVAVAVGGEVVPRSAW ATRELAAGDEVDVVTAVQGG >gi|289556828|gb|ADCD01000080.1| GENE 40 46874 - 48190 917 438 aa, chain - ## HITS:1 COG:Cgl1991 KEGG:ns NR:ns ## COG: Cgl1991 COG0665 # Protein_GI_number: 19553241 # Func_class: E Amino acid transport and metabolism # Function: Glycine/D-amino acid oxidases (deaminating) # Organism: Corynebacterium glutamicum # 62 423 15 348 374 191 37.0 2e-48 MRPLWQTGRSSMGARAAHAGLRGPQGRTAPARPTITTRCGSCRREEDRSVHVAVVGAGII GLTAAVRLRAAGHAVTLIAPELDTAGRPHAVAGATHAAAGMLAPLAETQFSQDDLAPLLQ AGWEAYPALVDLLAAFTGVETGFLAQGAWIVAADPSDARAWDHVLEHASILGRRVEPVSV RALRRAEPALTPGLAAGFDAPDDHQVDPRRLAAACVAALHAETGPDGGPLPAGAGPVARF LAGRVTAADPEGEGVRLTLADGDVLTADGAVLAAGLGHRGIGGAATAVEVPLRPVHGDVL RLRVRPEQLLPGESHLITRTVRGLVHGRQVYLVPRADGTLVVGASAREDGLAGTSAGAVL DLLADAAAILPAVRECELVEITTAARPGTPDDAPRVLTVPEAPGAVVATGFHRHGILLAP WAAGRILELLHARLKEIA >gi|289556828|gb|ADCD01000080.1| GENE 41 48012 - 48926 625 304 aa, chain + ## HITS:1 COG:MT0427 KEGG:ns NR:ns ## COG: MT0427 COG0352 # Protein_GI_number: 15839800 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine monophosphate synthase # Organism: Mycobacterium tuberculosis CDC1551 # 84 302 4 218 222 167 51.0 2e-41 MIPAPTTATCTDRSSSRRHDPHRVVMVGRAGAVRPCGPLSPACAARAPMELRPVCHSGRM HSPDPLLMAAADHDDGDTGAGRRARLAASRLYVCTDLQRFLRPDGTLDTAAFAHFCAAAF RGGVDLIQVRDKAVDVAVELAAFAVLVPLAREHGALSAANDRADVAALAGVDVFHTGQTD LTTAQCRALLGPDTVLGRSCHTEAQVRAARAEDGLDYFCTGPVWATPTKPGRAAVGLELP SLAARLDAEDPAGARPWFAIGGVDADRLPEVRAAGAERIVVVRAVTQAEDPEAAARTLRA GLPG >gi|289556828|gb|ADCD01000080.1| GENE 42 49285 - 50124 655 279 aa, chain - ## HITS:1 COG:Cgl1428_2 KEGG:ns NR:ns ## COG: Cgl1428_2 COG0351 # Protein_GI_number: 19552678 # Func_class: H Coenzyme transport and metabolism # Function: Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase # Organism: Corynebacterium glutamicum # 9 278 1 260 309 199 48.0 5e-51 MTPAVPRVLSIAGSDSGGGAGVQADLKTIAAWGGYGMTAITAITAQNTQGVQAVHPLPVD VVRAQLDSIAADIAVDAVKIGMLGTVELMGAVAAWLEETRPAVVVLDPVMVASSGDALTA VGDDDGRAAWSRLLRAAHLVTPNLPELARLTGRDATDWDAALDAARGLAAEHDVTVLLKG GHLDEAAAAEVPDAVVRVDGAVHEVRGPRVATRASHGTGCTLSSALATLAGAGLSWEDAI ERAKPWLADAMRAGEALAVGDASRPTWHGPVDHGHAQRG >gi|289556828|gb|ADCD01000080.1| GENE 43 50198 - 51355 880 385 aa, chain + ## HITS:1 COG:Cgl1071 KEGG:ns NR:ns ## COG: Cgl1071 COG3949 # Protein_GI_number: 19552321 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Corynebacterium glutamicum # 27 384 6 359 400 127 29.0 5e-29 MSHVTESSPAHPGRAEESPPLRPTSPLGIAATFIGTTIGAGYASGNEILQYFVSFGLWGG TGALVIAGALFFLLAVIVLRLAQKLRTTDIHRIVNPTTSRVPTWFADLCITTSLLGTLVI MLAGAGAAVHTAFGLPSLVGSLVTAAVCVVSVLAGITGLVRVQAVVVPLIIVVAVGVAVW GLVNPGAAVDDAAALVTSSPLINQWWLSGVLYVAFNIQLAYAVLAPIGQESSSSGRSLVA GAGLGALGLVVMAGAVMAAMTAHAQLIGRAELPMVELAAMIGGWAALLYTVVLLLAQFTT AVSCLYGGVERIALLSSMRRVPGWVIAVVTALAATLLSSVGFSDLVGTVYPVLGYAGIVI IVMLVVTWIVERTAVRRRAARAARA >gi|289556828|gb|ADCD01000080.1| GENE 44 51526 - 53349 1676 607 aa, chain + ## HITS:1 COG:Cgl1275 KEGG:ns NR:ns ## COG: Cgl1275 COG0422 # Protein_GI_number: 19552525 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine biosynthesis protein ThiC # Organism: Corynebacterium glutamicum # 22 589 7 585 587 841 72.0 0 MSVSERTPLPAAESTAEVVAEENYPTHRLGWLEDAEHGIRVPVTEVHQDDSPDGTPNAPL TVYRTMGPGSVPERGLPAQRAEWIRARGDVEEYEGRERDLLDDGRSAVRRGAASQEWAGE RRAPLRAQEGARVTQMHYARRGEITPEMRYVALREGVDVELVRSEVAAGRAIIPANVNHP ESEPMIIGKAFAVKVNANIGNSAVTSSIAEEVSKLQWATRWGADTVMDLSTGDDIHTTRE WILRNSPVPIGTVPIYQALEKVGGDHQALTWEIFRDTVIEQCEQGVDYMTVHAGVLLRHV PLSADRVTGIVSRGGSIMAGWCLGHHKENFLYENYDELCEIFARYDVAFSLGDGLRPGSV ADANDAAQFAELDTLAELTERAWAYDVQVMVEGPGHIPLHLVRENVERQQELCKGAPFYT LGPLVTDIAPAYDHITSAIGATEIARYGTAMLCYVTPKEHLGLPNRDDVKTGVITYKIAA HAADVAKGHPGARDRDDALSKARFEFRWRDQFGLGLDPQLAEEYHDETLPAEPAKTAHFC SMCGPKFCSMRISQDIRSEFGGASEQARIAEAGMAAKSAEFRAAGGSVYLPEPSLRRPEG DAVLARD >gi|289556828|gb|ADCD01000080.1| GENE 45 53552 - 54301 244 249 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164512|ref|YP_001467500.1| 50S ribosomal protein L24 (BL23; 12 kDa DNA-binding protein; HPB12) [Campylobacter concisus 13826] # 42 235 3 175 185 98 29 1e-19 MSAHHADDGLPAPVPTPAEDPPASGRQAPPSGVVVGEDGRARPPWAARDPLLREYYDTEW GLPVTDEPGLFERLVLEAFQSGLSWRTVLAKRPRFRQVFAGFDVDAVAAFGDAGVEALLA DPGIIRNRRKIEAAVANARAVVGMRGERFAPLHPGSPGAGPAWHGDGDRPARGLPGLVWA HQPATTPRPETVAQVPSASDESRALARALKAHGCRFVGPTTCFALMEAAGVVDTHLLGSW RRGASGIWG >gi|289556828|gb|ADCD01000080.1| GENE 46 54365 - 55780 1407 471 aa, chain + ## HITS:1 COG:DRA0343 KEGG:ns NR:ns ## COG: DRA0343 COG1012 # Protein_GI_number: 15808002 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Deinococcus radiodurans # 10 462 15 462 477 429 53.0 1e-120 MTTTSASQGYRTINPATGELLKSFDNATDQQIADALDASQAAYEQWSQKSVAERAAIVKR ISELLAERSKDIAALITTEMGKSLGAAVGEVRYGAQIFGYYADEAEELLADQPIKQFSGQ EAFVQRLPLGPLLGIMPWNFPVYQVARFVAPNLVLGNTILLKHAEINPQVAQLLEELFTE AGLPEGVYQNVFATHDQISTIIADPRVQGVSLTGSERAGAAVAEQAGRHLKKVVLELGGS DPYIVLSAPDARAAARDALATRMGNWGQACNSNKRMIVMEDLYDDFVDELVQRSSAMQPG DPTSRDADVYGPLSSESAADGLAEQIAAAKEAGATVHVGGERVSGPEGEGFYVSPAVITD VDQENPAYTQELFGMASVVYKVSSAEEAVALANDSQYGLGGAVFSTDLDEAKRVADQLEV GMANVNLASAAGANLPFGGVKRSGFGRELGPLALDEFANKRLYAVQGPLEG >gi|289556828|gb|ADCD01000080.1| GENE 47 55930 - 56487 243 185 aa, chain - ## HITS:1 COG:Cgl2272 KEGG:ns NR:ns ## COG: Cgl2272 COG1514 # Protein_GI_number: 19553522 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 2'-5' RNA ligase # Organism: Corynebacterium glutamicum # 20 183 28 178 183 119 42.0 3e-27 MLDHVEPALDGVRDRAGRALRWTEREQRHLTLAFHPEVPAGAVDDVVADAGRIAAGHAPL DLHLAGAGEFSHRTLWMGVGGQVRELGALLAEPWLADDDGRDRRRAHLTVARVSAATPRP RGRRRGEPRPSAPSTVLLAEAVHALAVYRGPQWTADEVEVVASRLGEGRSGGPLHEVLAT VPLRG >gi|289556828|gb|ADCD01000080.1| GENE 48 56520 - 58154 1510 544 aa, chain - ## HITS:1 COG:BS_opuE KEGG:ns NR:ns ## COG: BS_opuE COG0591 # Protein_GI_number: 16077734 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Na+/proline symporter # Organism: Bacillus subtilis # 5 500 2 480 492 438 47.0 1e-122 MDTNTVFLLAAIGLYFLAMIAIGLYASRKNTDLDDYMLAGRDMKPSVAALSAGASDMSGW LLMGLPGAIYAAGLVEGWMAVGLTVGAWVNWRVVAPRLRSYTEVAGNSITIPSFLENRFK DRTHILRIVAGLIILVFFTFYVSSGMVAGGKFVESTFGPDSFYAQGISINYLTGMLVVAG ITVLYTLFGGFLGASLTDVAQGVLMFLSLLAVPIVVILTMGGWDAVVEGIRAADAAGGGV NHFSMFENATLIGVLSSLAWGLGYFGQPHIIVRFMALRTPHDAAVARRVGIGWMALSVFG AVMVALVGIAYFQANPGTTLEDPETVFLVLASIMFHPFVAGLVLAAVLAAIMSTLSSQLI VCSSALVEDLYMLRGRTGSPTFTLWLGRIGVLVVALVAGLLALNPDSSVLELVSFAWAGF GAAFGPVILLALYWPRFTSWGAMAAMVTGAAVAWVWSEASAETWEWFGLYELLPGFVAAL VVGVVVSLVTQRSRRVQRRIDAEFTGAIDIVAGREPHPDVAPATMARDAAGGSTAAAADP RAQV >gi|289556828|gb|ADCD01000080.1| GENE 49 58153 - 62355 3597 1400 aa, chain + ## HITS:1 COG:STM1641 KEGG:ns NR:ns ## COG: STM1641 COG1643 # Protein_GI_number: 16764985 # Func_class: L Replication, recombination and repair # Function: HrpA-like helicases # Organism: Salmonella typhimurium LT2 # 26 1398 38 1299 1300 1182 49.0 0 MGSRESHPDSQPQSRIRPGRVGPGPRAPRMEAVMTQTPPPSTPAAQPSATPHDAAAITFP EHLPVAERREEIMAAIRDHQVVIVAGKTGSGKTTQLPKMCLALGLGEAGSIGHTQPRRIA ARSVAERIAHELGEEIGQTVGYQVRFTAQTSKATRVKVMTDGILLAEIPHDPQLRRYSVI IVDEAHERSLNIDFLLGYLRNLLPQRPDLKVIITSATIDPERFARHFGRPLAEGEDHADA VEADDGGRVVPAPIIEVSGRTYPVEIRYRPLTDEPSPDDPEDDADDAAETRDPLDAIGDA VLELAAEPPGDILVFLPGEREIREAADHLTGVVAGTTRLAGTEILPLFGRLSMAEQHRVF GRAGAGVRRRIVLATNVAETSLTVPGIKYVIDTGTARISRYSHRTKVQRLSIERVSQASA NQRAGRSGRTSDGIAIRLYSEEDYLSRPEFTDPEILRTSLASVILQMLSLGVARTPGDVK EFPFVQPPDGRQVTDGATTLTELGALEAGGARAGTITRVGRRLARLPVDPRLGRMILEAG ERGCVREVMVIAAALTIQDPRERPTEQREAADELHRRFADENSDFSAILNLWAYLRERQQ ELSGSQFRKLCRREHINWLRVQEWQDLVRQLRQLAKDVGLTVEAGPVDPVGRHEAVHKSL LTGLLSQIGAYDERRREYAGARGTRFAVFPGSALFKKRHPFVMAAELVETSRLWARTVAR IEPEWAEEVAGHLVKRTYNEPHWSRRAGSVVAREKVTLFGVTLIPDRSVRYGRIDPELSR ELFIRHALVEGDWRTRHRFFARNRAALEEVDALETRLRRRDLRIGDEDLFAFYDARIPGN VVSERHFDAWWKKARQDQPDLLDLDVAALLTQDAEDLDTDAFPTTFTYPMPGGDVELDLE YTFDPTGAAGTDGVTVAVPILLLNQVSPGPFAWLVPGLRVELVTALIKALPKAVRKNLVP APDVAQQLVADLEAHADPLRDELPDALSAAVRRVRGVVVEPGLWAPDAVPLHLRMDYRVV DARGAVMGAGQDLPALQARLAQANRSAIAARLAGTDDPASARPGPRRTGRGGRAQADGRA GAEGRRRPEGPGRSGATPAFEERHGLTSWSIGTVPRTVSTAAGARGPAITGYPSLVPETT PNGGPAAGLTVARSADDQAAWHRAGVIRLLLATLPSPQRYVLDHLDNREKLTFTQNPHGS VDSLVADCTQAAVDRLVGDELPFDEAAFRALFDRVRADLIDTVFAVTSLVEQVLSRAAQV RRRLKGSVSLALAPALSDVKAHLEQVVFPGFVAATGWERLQHLPRYLQGILTRLDRLDAG GHLQRDGQHMAVVQGLEDEFDAAVAAHRARFAGTPVPAELERVRWLIEELRVSFFAQELG TAVSVSEKRVRQALARATRA >gi|289556828|gb|ADCD01000080.1| GENE 50 62380 - 62808 400 142 aa, chain - ## HITS:1 COG:MT0784 KEGG:ns NR:ns ## COG: MT0784 COG0537 # Protein_GI_number: 15840174 # Func_class: F Nucleotide transport and metabolism; G Carbohydrate transport and metabolism; R General function prediction only # Function: Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases # Organism: Mycobacterium tuberculosis CDC1551 # 3 134 2 133 133 149 54.0 2e-36 MATVFSRIIAGELSARFVWQDQTCVAFLSAAPLQPGHTLVVPRAEVDEWVEVDPALVTHL TTVAQQIGKAQVAAFSARRAGLMIAGYEIPHLHVHVWPSTSLADFDLARVDNAPDPADLD DAAARLRAALRDLGHGEVVPQD >gi|289556828|gb|ADCD01000080.1| GENE 51 62853 - 63980 572 375 aa, chain - ## HITS:1 COG:PA1292 KEGG:ns NR:ns ## COG: PA1292 COG2897 # Protein_GI_number: 15596489 # Func_class: P Inorganic ion transport and metabolism # Function: Rhodanese-related sulfurtransferase # Organism: Pseudomonas aeruginosa # 108 365 21 283 284 175 43.0 1e-43 MHSESPDPSPVPDRDGAAPDRPDPLIVVDERQGRVVPAPTAAPPSAHDAGGDPDADTDGV DPEAAEPPTLVTVDVLAGWLGLAPVEDLPPVPGGPAYAQPGRCRPNRVILLDVRFRATGG GPDHAAYLQGHLPGAVYVSLPSQLAGHAGPAAGRHPLPDARQFAETVRMWGIDEGDTIVV YDDDHGLSAARAWWLLRHAGLRDSVLLDGGLEAWRAAGLPLQPGEVIPVPGTARPSWGRM PVVDTAGAEAMASGGLLLDARAAERYRGEVEPLDPVAGHIPGARNVPTAESIAEDGRLRP AAELAERFDAVGVDDATPVAVYCGSGITAAHAVLTLAVAGRPGVALYPGSWSAWVQDPST AVAVGPEPDGASGRD >gi|289556828|gb|ADCD01000080.1| GENE 52 63588 - 64538 433 316 aa, chain + ## HITS:1 COG:MT2428 KEGG:ns NR:ns ## COG: MT2428 COG0735 # Protein_GI_number: 15841871 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+/Zn2+ uptake regulation proteins # Organism: Mycobacterium tuberculosis CDC1551 # 185 309 7 130 130 139 56.0 7e-33 MALEIGGVVRPAPRGPEPDVEQDHPVRAASARLGVGRAPGHRRQVLDGGQAEPAGQHVHR HQGGRLGGLGIDAVGVRVRVAAGVMGRGRGRRGRRDHAALPLVDDDQRVGSIGGGAVAVR DRGWVRALAVHPDTLLHAPFGAADNLEDGPRGPVPDRAEEAAAAAEGVVSTVSAPQPGPR VARPRATRQKAAVDRALDRIPDFVSAQELHARLQDQGERVSLATVYRTLQQQLDDGLVDM LRRDDGETVYRRCEDEGHHHHLVCRICWTTVEVTAPHVEAWATAVAAEHGFTDAGHTVEI TGVCARCRAEGRTRAA >gi|289556828|gb|ADCD01000080.1| GENE 53 64558 - 65376 187 272 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 30 235 19 224 305 76 26 5e-13 MNASFPAGAAAATPPLAVARALELRHGSHVAVRHSDFTLPARRLIAVIGPNGSGKSTLLT ALAGLSDPASGALEVLGENPRRRTQRTSFVMQSIGVPQGVPVTVRDVVGMGRYPTLGWFR RFRKRDRDIVRAAMERMQVADLARRHLDQLSGGQRQRAYVAQGLAQDHDVLLLDEPMTGL DIVSARTIDDLLHEEPTRGVSVVYTTHDLDEAAEADHVVLMGGRVVASGPPRDVLTVENL DIAYGRGALHGPSKAVEDAADFLDDPAGGIRH >gi|289556828|gb|ADCD01000080.1| GENE 54 65373 - 66272 678 299 aa, chain - ## HITS:1 COG:Cgl0028 KEGG:ns NR:ns ## COG: Cgl0028 COG1108 # Protein_GI_number: 19551278 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Mn2+/Zn2+ transport systems, permease components # Organism: Corynebacterium glutamicum # 2 269 6 276 283 186 45.0 3e-47 MDWLLEPFQMGFQQRALVGGLIAVVMCSVVGTWLVLRGMSFFGDAFVHGVLPGIALAVVT GGSPHLGAAVAAVVMMAGISLVHRATTLKEDTAIGLLFVGMMALGVVIISKSDSYTGSLT SILFGDVLGVSVDGIVTQAVIAVVVIALALLLYRPLLALSFSEVKARSLGMRPGLTHTLL LVMIGAAVIGSFQAVGTVLVFGLLVGPPATAALLTRSVPQMMLVSVVIGAACVVTGLTLS YRLGTAGSATMALMPILLFFVVLAVRAAVLALLGRHVRSRAQREQEAPVVALPGAEVAR >gi|289556828|gb|ADCD01000080.1| GENE 55 66275 - 67282 784 335 aa, chain - ## HITS:1 COG:Cgl0027 KEGG:ns NR:ns ## COG: Cgl0027 COG0803 # Protein_GI_number: 19551277 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface adhesin # Organism: Corynebacterium glutamicum # 5 333 22 317 318 134 29.0 2e-31 MLRRRRLPALTGALAALTLSLAACGGTDGGSSGAQAAGSSAAAGSGSAAGAPVAVATTTQ LGSVLDRVVACADARSTTVMGPGDDPHDFSASSAQVKDMVSSGLVFSNGLGLEGGMESAL ANAEADGATVVEVAPQLDPLPFGGHDHAEEGAGHEGHDHGSEDPHVWMDVARMARAAELM GDTLAQERGDEKFAECGATVRGELEQTDTQVREILAGVPEDRRTLVTDHDAYGYFGEAYD FTVSGVVVPGGSTDGEPSSQELAELARSIRDGGADAVITSVGARNSLVDTVAEEAGDLPV IEVYEGGVGPKDTPEADYAEAMLANARTLADALEG >gi|289556828|gb|ADCD01000080.1| GENE 56 67359 - 68417 919 352 aa, chain - ## HITS:1 COG:Cgl1413 KEGG:ns NR:ns ## COG: Cgl1413 COG1253 # Protein_GI_number: 19552663 # Func_class: R General function prediction only # Function: Hemolysins and related proteins containing CBS domains # Organism: Corynebacterium glutamicum # 8 344 7 349 354 229 39.0 7e-60 MNGDVVGLLWLVVLLAANAFFVAGEFAVMGARRAQIEPRAEAGSRQAQVALYAMEHVSQM LAVCQLGITVCSLLILNVSEPALHHLLVVPMGALGVPAAAADVTAFVLALLVVTFLHVTL GEMVPKNAAVSFADRAVMLLAQPLVWLSKLLHPVVAALNWTANLVLHALHIEPKDEVASS YTLEEVQSIVAESTRSGTLDDESGVLHSALEFSDHRAGDVMVPLERVVTVPEGITPHDFE WTVGRVGFSRFVVEDPDGGYTGYLHLKDVLTVGPSGYDEPIPLTRVRSLANVRLEDEVED ALALMQRTGSHLARVITPEGETAGILFLEDVLEELVGEINDVTQSPRRFRPA >gi|289556828|gb|ADCD01000080.1| GENE 57 68414 - 69655 1118 413 aa, chain - ## HITS:1 COG:Rv1842c KEGG:ns NR:ns ## COG: Rv1842c COG1253 # Protein_GI_number: 15608979 # Func_class: R General function prediction only # Function: Hemolysins and related proteins containing CBS domains # Organism: Mycobacterium tuberculosis H37Rv # 1 398 30 436 455 258 40.0 2e-68 MIAIDVPTVQRMVDAGDRGAEPLLRCLKSLSTQLSACQLGITLTTLLTGYVMDPAISRLI DPLLLQVGLPAGVVGTVSLVVAMIVATLLSMLLGELIPKNMSIAEPMVIGRALARPQLVF STVFKPAILVLNGFSNGVLARVGIEAKEEISGARSPEELSSLVRRSAQLGTLDAQTASFL DRTLRFADRTAADVMTPRIRVETVGEDQALPEVLDLARSTGYSRFPVIGDSSDDIRGVVH VKKVVAVPRERRADLEAGALMTEVIRVPETVHLDQLLAELRDANLQMAVVVDEYGGTAGV VTLEDVVEEIVGEVADEHDRVTPGVLQTASGRWYFPAELRPDEVRTQIPALVVPEDGAYE TVGGYILARLGRLAEVGDVVDVDGGTLTVERLDGRRIERVRFDPAAEDEETRA >gi|289556828|gb|ADCD01000080.1| GENE 58 69915 - 71396 1061 493 aa, chain - ## HITS:1 COG:Cgl2623_3 KEGG:ns NR:ns ## COG: Cgl2623_3 COG0516 # Protein_GI_number: 19553873 # Func_class: F Nucleotide transport and metabolism # Function: IMP dehydrogenase/GMP reductase # Organism: Corynebacterium glutamicum # 216 491 1 276 277 354 68.0 2e-97 MRFLTDPAVDLTYNDVFLVPSHSDVASRMDVDIAPDDGTGATIPLVSANMTAVTGRRMVE TMARRGGLGILPQDIPADVIRDVVRRVKAAHPVADTALTVGPQDTVLDLLHLVDRRNHGA VCVVDAHGELLGVVRPQDCEGVDRFASAASVMHPPAVTLTLAELGGADGAPDKDALRAAF ERLHAARQEMAPVVDPAEGTAAPMLRGVVTAAGLLRSSVFTPGLDDDGRLRVGAAVGING AVGEKAAALVEAGVDVLVVDTAHGHQKTMLDALAAVRALDPGVPVVAGNVVSGDGVRDLV AAGADIVKVGVGPGAMCTTRMQTAVGRPQFSAVLECAVAARELGARVWADGGVKHPRDVA LALAAGASSVMIGSWFAGTLESPGDLVHGPDGRRYKESFGMASARAVQHRTRHEDAFTKA RKAMFEEGISSSRMYVDPRRPSVEDLLDTITSGVRSSLTYAGAHDLAQFRERAVVGLQSA AGYEEGRPVGSSW >gi|289556828|gb|ADCD01000080.1| GENE 59 71597 - 75355 3320 1252 aa, chain + ## HITS:1 COG:Rv1248c_3 KEGG:ns NR:ns ## COG: Rv1248c_3 COG0567 # Protein_GI_number: 15608388 # Func_class: C Energy production and conversion # Function: 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes # Organism: Mycobacterium tuberculosis H37Rv # 376 1251 1 894 894 1005 57.0 0 MPELTSDRLAQEFPGNERLVAEIYRKYREDSGSVDRQWAQIFARLEASAPAEAEPKASAQ TEPKASAKVTEPKASTKVTEPKASTKVTEPKAATAPARGAQPKETSVSTGPKPKKTPAAQ AVPSEPADTTATTADEKQEKATVLKGMAKAVATNMDASLSMPTATTVRDLPAKVLIDNRV VINSHLARTRGGKVSFTHLIGYAVVRALAAMPSMNVTYEERDGKPTMVEPAHVNFGLAID LPRPDGTRALVVPNVKAAETLDFRGFWKAYDDLVQRARKNKLTMDDYAGTTVSLTNPGGI GTVHSVPRLSQGQAAIIGVGALTYPAAFQGAAESTLHDLAISKTITLTSTYDHRVIQGAG SGEFLKIVHGLLLGEDGFYDEVFHSLRIPYEPVRWAQDVQVNPEEQIGKVARIQQLIHAY RDRGHLLANVDPLEYSMAYHPDLDIREHGLTLWDLDRKWPTGGFGGASSLTLRKILGVLR DAYCRTIGVEYMHIQDPAERAWFQEKLEQPYAKPTREEQLRILGRLNAAEAFETFLQTKY IGQKRFSLEGGESLIPLLDGILGDAADAGLDEVAIGMAHRGRLNVLTNIAGKTYSQVFRE FEGATPGGASGSGDVKYHMGTEGTFVSDAGNSTRVYLAANPSHLEAVDPVLEGVVRAKQD RLDLGGQRPDSFSVLPILVHGDAAFAGQGVVTEVLQLSQLPGYRTGGTIHVIVNNQVGFT TPPTQARSAVYSTDVAKTIQAPIFHVNGDEPESVMHVAQLAFEYRQRFNKDVVIDLVCYR RRGHNEGDDPSMTQPRMYNLIEQKRSTRKLYVESLVGRGDITQEEADTALKDYQQQLERV FAETHEDAPTSGGEGIRPAEDRDAVPEAPASTAISAETLRAIGQAHIDVPEGFTVHPKLA ALLERRAKMAVDGGIDWGFAELAAFGSLLVEGVPVRLAGQDSQRGTFTQRHSVFHDRITG ETWAPLKHLSEDQAKFWVYNSLLSEYAALGFEYGYSVERSDALVLWEAQFGDFVNGAQTI IDEFISSADQKWSQTSSVVLLLPHGYEGQGPDHSSARIERFLQMCAEDNMRVVNPSTGAN HFHLLREHAYARPRRPLIVFTPKQLLRLKAAANSVEDFTEGRFQPVIPDAGVDAKDVTRV LLVSGRLYYDLLARREKSGDTSTAIVRVEQLYPLPLDEIRTALRAYPDADVAWVQDEPAN QGPWPFMALNLVPQLDRPVTLVSRPASAATSAGTKGRHDQELGTLLDAAFGR >gi|289556828|gb|ADCD01000080.1| GENE 60 75432 - 76037 389 201 aa, chain + ## HITS:1 COG:alr1529 KEGG:ns NR:ns ## COG: alr1529 COG2755 # Protein_GI_number: 17229021 # Func_class: E Amino acid transport and metabolism # Function: Lysophospholipase L1 and related esterases # Organism: Nostoc sp. PCC 7120 # 5 194 8 202 206 75 28.0 4e-14 MHNRRIRIAAVGDQLLAGAGDARAIGWWGRVLARTQAPDVELENYVLAVPHETTEDLNER WWGEASRRFSEETENRLVVALSDADLDLEATSTARSRLNLANVLDTASQRNIPVLVVGPT PTLDEQRNARLAELNAAYLDVADRRNHVYVDTFTPLVGHEQWRSDLASGQGRPGQAGHGL IAWLVLHRGWYQWLGLPEPTA >gi|289556828|gb|ADCD01000080.1| GENE 61 76293 - 76571 201 92 aa, chain - ## HITS:1 COG:no KEGG:Mlut_07710 NR:ns ## KEGG: Mlut_07710 # Name: not_defined # Def: anti-sigma factor, TIGR02949 family # Organism: M.luteus # Pathway: not_defined # 1 92 1 92 92 148 94.0 5e-35 MTADQHGNECCDAQDASLERLYQYLDGALTPEDIEQVRAHVADCPDCRHQKELEELIRSA VRRCCQEKAPAQLRATIMTRITQISTTTVTWG >gi|289556828|gb|ADCD01000080.1| GENE 62 76568 - 77284 648 238 aa, chain - ## HITS:1 COG:MT3320 KEGG:ns NR:ns ## COG: MT3320 COG1595 # Protein_GI_number: 15842811 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog # Organism: Mycobacterium tuberculosis CDC1551 # 27 212 86 271 284 245 68.0 5e-65 MSTDNSRPEFARPEDAPEHDRADIDVAAESEQQRRARFERDALEFVDQLYSAALRMTRNP QDAEDLVQEAYTKAYSSFHQYRPGTNLKAWLYRILTNTYINLYRKRQRQPLEADNPEVED WQMARAAEHTSGGLRSAETEALDRLPDSQVKDALQAIPEEFRLAVYFADVEGFAYKEIAE ILDVPIGTVMSRLHRGRKQLRERLADYAAARGIKAQPKKKTGRGGTKQTEKSTKEATR >gi|289556828|gb|ADCD01000080.1| GENE 63 77491 - 78921 857 476 aa, chain + ## HITS:1 COG:Cgl0740 KEGG:ns NR:ns ## COG: Cgl0740 COG0128 # Protein_GI_number: 19551990 # Func_class: E Amino acid transport and metabolism # Function: 5-enolpyruvylshikimate-3-phosphate synthase # Organism: Corynebacterium glutamicum # 22 467 14 430 430 303 46.0 5e-82 MTRPTRAAAHSPAPRPDAAETWPAPVARGPVRGDVRLPGSKSLTNRHLVLAALADGPCIL HGVLESRDTALMRTALTALGARFEPLSDGGLRVHPMPVGEPLAGDVAVDCGLAGTVMRFV PFVAALRPGRVRFDGDAGARLRPMAPVLDALRQLGVAVVEEGGPGRLPFTMTTRADAATV APDGDVPEVAVDASGSSQFLSAALLAAAGMPRGLRLRHTGETVPSPEHVAMTAGVLRALE VDVAETGPGAWTVAPGRIPGHEAAVEPDLSNAGPFLAAAVATGGSVTVPDWPTRTTQIGD RWRRILPQFGASVALTVDRTDRSRGRLTVTGAVHDDGAPRITGAGEIADTAELAPTAAAL ALLASGPTRLTGIGHLRGHETDRLAALTAEAARLGITVDEGETSLGFPGTDASGPLSPAA LETYHDHRMATFAAVVGLRVPGTGVVDVATTAKTMPDFPALWTALVAPDDAAEEAR >gi|289556828|gb|ADCD01000080.1| GENE 64 78921 - 80021 897 366 aa, chain + ## HITS:1 COG:ML0791 KEGG:ns NR:ns ## COG: ML0791 COG1162 # Protein_GI_number: 15827343 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Mycobacterium leprae # 10 350 7 322 327 270 52.0 4e-72 MARRLDPSAWDESDVRVRPSKRGTRPRTKERPKHEDAQVGMVTTVDRGRYAVVLPERLDE RITAMRARELRRTPIATGDRVAVVGDLSGDEGTLARIIRVEERSTVLRRSADDSDEVERV VVANADLLMIMVAAANPEPRTGFIDRALVACYDAGIHPVLLITKTDLRDPAALVAHYEAL DLEVMTSGAATFEAETGDTALDASLVARVAERLIGHTSAFVGPSGVGKSTLLNALTGAER ATGHVNAVTGRGRHTSSSALALPLTGDDGAPLPDTWVVDTPGIRSFGLGWVEPDRVVEAF DDLAGGLADCPRGCTHTADSPGCGLDAWVAAGHAGPSGAARLASLRRLLGNRLAPSGAED AASSED >gi|289556828|gb|ADCD01000080.1| GENE 65 80051 - 80890 746 279 aa, chain + ## HITS:1 COG:Cgl0776 KEGG:ns NR:ns ## COG: Cgl0776 COG0483 # Protein_GI_number: 19552026 # Func_class: G Carbohydrate transport and metabolism # Function: Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family # Organism: Corynebacterium glutamicum # 30 270 20 260 260 290 62.0 2e-78 MERPENPATRGRDLTEDLRLAHMLADNVDSITMSRFKAQDLEVSTKPDLTPVTDADRAAE ESIRSTLSRARARDGIVGEEFGGSLSRSGRQWVVDPIDGTKNFVRGVPVWATLIALLIDG EPVVGVVSAPALHRRWWAAAGQGAFAGTSLTRAQRITVSGVDRVEDASLSFSSIEGWRER GSIRAFLQLTSDVWRVRGFGDFWSYMLVAEGAVDIAAEPELELHDMAALVPIVREAGGRF TSLDGEDGPFGGHALATNGLLHDDVLARLRTGDETEDGA >gi|289556828|gb|ADCD01000080.1| GENE 66 80890 - 81453 282 187 aa, chain + ## HITS:1 COG:no KEGG:Mlut_07660 NR:ns ## KEGG: Mlut_07660 # Name: not_defined # Def: CrcB-like protein # Organism: M.luteus # Pathway: Metabolic pathways [PATH:mlu01100] # 27 187 1 161 161 189 96.0 6e-47 MAARGEPTADRRGGLGTDRRPGTAGAVALGGAAGVLCGAGVMNAVTALAGAPNFRGTFGA AFGAVDVLVQALPLFVVNVLGSFLLGLLWAASRRHGPDWRPRLVAGLGTGFLGAFTTISS AVALVLWPVRLGAAASGAGVVLAAAASVLLVLALMAALSTAAAVLGLRAGGAPGSRVVGT DRSEEDA >gi|289556828|gb|ADCD01000080.1| GENE 67 81450 - 81896 382 148 aa, chain + ## HITS:1 COG:no KEGG:Mlut_07650 NR:ns ## KEGG: Mlut_07650 # Name: not_defined # Def: CrcB-like protein # Organism: M.luteus # Pathway: Metabolic pathways [PATH:mlu01100] # 1 148 1 148 148 129 95.0 4e-29 MSGAGYEVFALFQVALLACLAAGGALGALARRRLTDRLGPRGLLTANTTAALLLGATVGL AVPELVDASGGWGDGQGLMLVAAVSAVVSGFCLALGTWSTVAAEAADAVLARRWGAAARL WAAHLGLGLVAVVVGWGAGLGLHAVLAG >gi|289556828|gb|ADCD01000080.1| GENE 68 82111 - 82371 95 86 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSASRPPARVTPSGYLADATIRGDSDLGVTDSITDQAARAKSVRLDSALIGLQRAFDEMT LHPRPASPDATHTVETDRPQGGATPL >gi|289556828|gb|ADCD01000080.1| GENE 69 82486 - 83001 617 171 aa, chain - ## HITS:1 COG:Cgl0781 KEGG:ns NR:ns ## COG: Cgl0781 COG0691 # Protein_GI_number: 19552031 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: tmRNA-binding protein # Organism: Corynebacterium glutamicum # 11 164 5 158 164 155 51.0 3e-38 MGKNSKGKATKQPAPGERQVIANNKKARHDYTILDTYEAGMVLTGTEVKSLREGKASLVD GFAVFYRDELWLEQVYIPEYLNGSWTNHAARRRRKLLLHRAELTKISRQIQDPGLTIVPL SLYFLNGRVKVEIGVARGNREYDKRHKLREQQDNREAQRAMRMRNRRAGVA >gi|289556828|gb|ADCD01000080.1| GENE 70 83131 - 83796 629 221 aa, chain - ## HITS:1 COG:MT2578 KEGG:ns NR:ns ## COG: MT2578 COG2057 # Protein_GI_number: 15842031 # Func_class: I Lipid transport and metabolism # Function: Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit # Organism: Mycobacterium tuberculosis CDC1551 # 11 220 5 210 218 270 70.0 1e-72 MSEQTTERPQGLSRDQMAARAAQELPDGAYVNLGIGMPTLIPNHIPAGRSVVLQSENGIL GTGPYPTEDAVDPDLINAGKETVTVNPGASFFDSALSFGMIRGGKIDVAVLGGMEVSAAG DLANWMVPGKMVKGMGGAMDLVHGAGRVIVMMDHVSKDGTPKIVDQCTLPLTGCAVVDRI ITDLAVIDVVGTPEQPRLALVETAPGVTEEQVRALTGAPLD >gi|289556828|gb|ADCD01000080.1| GENE 71 83793 - 84602 848 269 aa, chain - ## HITS:1 COG:MT2579 KEGG:ns NR:ns ## COG: MT2579 COG1788 # Protein_GI_number: 15842032 # Func_class: I Lipid transport and metabolism # Function: Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit # Organism: Mycobacterium tuberculosis CDC1551 # 3 262 1 247 248 298 64.0 1e-80 MALDKTVATPAEAVADVSDGASLAVGGFGLVGNPVQLIEALLEQGATDLSVVSNNCGVDG WGLGILLGARRLRKMTSSYVGENKEFARQYLEGELEVELVPQGTLAEKLRAGGAGIPAFY TRSGVGTQVAEGGLPMRYDADGTVVKSSQAKPTDTFVLGEGYLSQTPDEPETYVLERSIV TDFSLVHAWKGDRHGNLVFRKATRQFGPPAAMAGRVCIAQVEELVEPGEIDPDDVHLPGI FVHRIVEVGTDIEKRIEKRTVRASGEEQA >gi|289556828|gb|ADCD01000080.1| GENE 72 84601 - 87339 1186 912 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289706412|ref|ZP_06502770.1| ## NR: gi|289706412|ref|ZP_06502770.1| conserved domain protein [Micrococcus luteus SK58] # 827 912 1 86 86 154 98.0 4e-35 MSRVLSVRGGPSAEEDQGLALAAAAAERDGRAAAVAPVELEGGVQGQPGAGGADRVAQGD GAAVDVGLLVRVVEVAQGLHGHRAERLVDLDEVEVGHVPALLPHGGVDRVGGLRVQLRAV RAGGLAGCAHRGEDRQALLLGEGTRGHHEGGGAVGQGRGVAGRDRAVLRERRAQGAQRLG GRVRSDPFVLGDDQRVALALRDLHRGDLALEDALGLGPGGPLVRRRGDLVLLGTGDVPLA VAGLGQLAHGLVAQGVGEAVPRDGVEHGGRAVLEALARAGQQVRGVGHGLLTAGHHHVRL AEADETGGVDHGGEAGQAHLVDRHGRDVPRDARGERGLAGRVLPRAGLHDLTHVDHVHVL GGHAGALERVRDRVGAQIHGAQVGLLREQSGEGRAGTAHDHGVGGLRLGQLGGHAVLLER STRFITIHSNAVYDPGHRRARRRRIRDDAPQCRDPTARTRRLRARAVVGTSGGRAGASEA LAGRRDEDLHGRLVVVDEGLEALVDQVVEADLAGDERREVHGAVLDHADGVRVVVRVRDR AAQVDLLEHQLVQGHGGLVTPDGLVDDHAAGTHRVQQHVQHHVHRGALEAHVRALAVVQF ADLGGHVHLARVEGLVHHAGLEHLLPPQLRELGDVHRQALALEHGRSERADGAGAADQRH ARRRRAGSHPRVVGHGERLDEGGLVERHGVGHRVDPAAPHRDLLGQAAAVAAQADEVHVR REVVVRSVLVLLAHDVRLHDDLLADLEVRDALAQGGDGAGHLVAERDGGGVTGDRVRVSG RRDEDRTLEVLVQVRAADAAPRDVHEDLPRTGRGRGDLLDADVLLAVPTCGAHGHAGRPP GWGWSRVPGRRAGAPAPVRRASHRAGLPGQARGPCGASTTTPARASLRRCGPASWWPRRR GRAAGLSPPGRP >gi|289556828|gb|ADCD01000080.1| GENE 73 87317 - 88438 1158 373 aa, chain - ## HITS:1 COG:Cgl0778 KEGG:ns NR:ns ## COG: Cgl0778 COG1186 # Protein_GI_number: 19552028 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor B # Organism: Corynebacterium glutamicum # 5 371 4 368 368 404 59.0 1e-112 MADTDFSAEIDSLRHTLASIEQVSDLDRIKADIAELEQQASAPDLWDDPEEAQKVTSKLS HRQTDLKRITSLESRIEDLETMVELAAEEDEPSLLEDANQELTSIRKALEELEVVTLLSG EYDQRDAVVTIRAGAGGVDAADFAETLMRMYLRWAEQRGWSTKVMDTSYAEEAGLKSVTF EVNAPFAFGTLSVEAGTHRLVRISPFDNQGRRQTSFAAVEVVPLIESDDSIEIPESEIKV DVFRSSGPGGQSVNTTDSAVRMTHLPTGIVVSMQNEKSQIQNRAAALRVLQSRLLLLRKA EEDAKKKEMAGDVKASWGDQMRSYVLNPYQMVKDLRTGHEEGNPSSVFDGHIDDFVDAGI RWRAEQVKAAQED >gi|289556828|gb|ADCD01000080.1| GENE 74 87386 - 89713 468 775 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|139439316|ref|ZP_01772758.1| ## NR: gi|139439316|ref|ZP_01772758.1| Hypothetical protein COLAER_01774 [Collinsella aerofaciens ATCC 25986] # 58 305 105 344 387 68 37.0 2e-09 MAVEHGGGVALLVARAQVLDHLVRVQHVGAHLVAPGRLDVAGHLLLLRVLLGLAQQQQAG LEHTQGGGTVLDLRLLVLHGHDDAGGQVRHADGGVRGVHGLAAGARGAEHVHLDLGLGDL DGVVRLDQRHHLDRREGRLAAALVVEGADAHEAVRAGLHGEGAEREGRVDLEGDGLQAGL LRVGGVHDLGGPAALLGPAQVHAHEGLGEVGRVHAAGARADGHDGVALVVLAAEQRDDLE FLQGLADGGQLLVRVLQEGGLVLLRGELDHGLQILDAALQGGDALEVRLTVGELGGDLLG LLRVVPEVRCGGLLLQFGDVRLDAIEVRDLLDGGQGVAQGVDLRGEVSVSHDSASLPRGV DAGRVPAADGRRDGLGLGDVRPVARADVDDGGVRGDRVQVPLVDVPGAAHVQRRDGDAGP EGTGVRGEDGGPELAHRMVRRGVHVSQDPLVPRLRDEEAPRKRGAEHAPPVRAGGEAGLR RPGGQGGVRHRDVRVDDHEGAGSHQPVGDGAQRDDSARAVADQQPRHGAGLRRPGVGGVA DGVRVGRRPCGPGAVLAACIRARVAGQGGRGGEVGRGAEGVGKGLEVGGSATDAVEEADH RARLVRLLPVASRGTDRGSVPANGPVMANRSARASRVTTTVVPSSATRALIPPSPGTASR APTAARCALAEAATSPSESTTPGSSPSRKPSSSAPATAAESASDCRRRCCSCTVVTASMT SMRATSTAHRPTVRTVVCPSSRPRRAVRGRRIRTSAPSVGRRSPRSRGSATTLPA >gi|289556828|gb|ADCD01000080.1| GENE 75 89640 - 90068 332 142 aa, chain - ## HITS:1 COG:no KEGG:Mlut_07550 NR:ns ## KEGG: Mlut_07550 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 142 1 142 142 205 95.0 3e-52 MRSVNDVRDERGAATVEFLGLTLVVLIPVVYLMIYVSQVQAAAFASVAAADQAVRAVVAE ADRPSAGAAHATVELTLADYGVGTGQYDLTVGCDQGGCGTLEPGEVVAVRVDVAVPVPLT PAAWSLTPVTVGSDARQTVPRF >gi|289556828|gb|ADCD01000080.1| GENE 76 90052 - 90480 257 142 aa, chain - ## HITS:1 COG:no KEGG:Mlut_07540 NR:ns ## KEGG: Mlut_07540 # Name: not_defined # Def: TadE-like protein # Organism: M.luteus # Pathway: not_defined # 18 142 2 126 126 183 97.0 1e-45 MPRGAAHGAPAPRGGHAGVPWRDDRGAAVAESTMVMTLVVLLFAALLQAGVVIHTRNVMI DAASAGARYGALADRNPEDGVQRARELLSTGVPGQSGADVAAELTSQDGVPVLRVTVSSS LPGLGFLPGPIPVEVSGHAFRQ >gi|289556828|gb|ADCD01000080.1| GENE 77 90483 - 90689 186 68 aa, chain - ## HITS:1 COG:no KEGG:Mlut_07530 NR:ns ## KEGG: Mlut_07530 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 68 1 68 68 86 98.0 2e-16 MLHHHAITVLAALRALIHDDVRDERGDVPGWVMITLMSAVLVAGLLALALPALEGLFNQA ISQVSQGG >gi|289556828|gb|ADCD01000080.1| GENE 78 90778 - 91719 663 313 aa, chain - ## HITS:1 COG:PAB1459 KEGG:ns NR:ns ## COG: PAB1459 COG2064 # Protein_GI_number: 14521587 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flp pilus assembly protein TadC # Organism: Pyrococcus abyssi # 71 307 9 236 308 66 30.0 6e-11 MTSALIWAALLGLTLGAGLLLILVTQPVGWRPSLEQRVEPQLRHHIPASRLLEEERAGAS PWGAWGRILDPVVQAGVGWVQRISPGGVALDRKLAAAGLAVTSTDFRAQQVLSAAAGAAV AAVLALSLTVTGRVPVITGVALVIAGGMAGFLLRDQLLSLRARRRREAILSEFPSVAELF ALSVGAGESAAGALERIAGTARGELAGEFRVTLADMRAGASLSAALKAMGRRVQLAPVER FIGGVLIALDRGTPLADVLRAQAQDVREMGRRELMEAAGRKEIQMMVPLVFGILPLTVIF AVFPGISLMRLGF >gi|289556828|gb|ADCD01000080.1| GENE 79 91716 - 92573 630 285 aa, chain - ## HITS:1 COG:no KEGG:Mlut_07510 NR:ns ## KEGG: Mlut_07510 # Name: not_defined # Def: Flp pilus assembly protein TadB # Organism: M.luteus # Pathway: not_defined # 17 285 17 285 285 415 97.0 1e-114 MAALLGLALGCGLFLLWWSLWSPPTERPEAARTDSRLRVLIAQSGIQRLSPAGVVSAMAV GGLVVGLIVLSLTGTWTIAACFAVFGAAVPWLLLSWQARRRSTALRELWPDAIDHARSAI RAGLTLPEALIQLGETGPEGLREPFQHFARDYRAGARFVDALDRLKARMADPVADRLVVS LRLTREVGGADIGRLLQTLSEFLRQDARIRAELEARQSWTVNAARLAVCAPWLVLLLLGT QPAAVAAYRSAAGGAVLLAGMVASVVCYRVMLRIGALPREKRVFA >gi|289556828|gb|ADCD01000080.1| GENE 80 92573 - 92998 327 141 aa, chain - ## HITS:1 COG:mlr6483 KEGG:ns NR:ns ## COG: mlr6483 COG4962 # Protein_GI_number: 13475420 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Flp pilus assembly protein, ATPase CpaF # Organism: Mesorhizobium loti # 1 113 308 423 461 79 41.0 1e-15 MRPDRLIVGEVREAEALDMLVALNSGLAGMCTIHANSAADALTKLCTLPLLAGENISRDF VVPTVATCIDVVVHCERDRQGRRRVREILTVGSRVEGGVIETSALFQRDTEGDLRLNEGA NLEFEALARRGVDVHELVGLR >gi|289556828|gb|ADCD01000080.1| GENE 81 92777 - 97036 1667 1419 aa, chain + ## HITS:1 COG:CAC3709 KEGG:ns NR:ns ## COG: CAC3709 COG1674 # Protein_GI_number: 15896940 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: DNA segregation ATPase FtsK/SpoIIIE and related proteins # Organism: Clostridium acetobutylicum # 933 1127 668 872 1498 145 38.0 8e-34 MHDDVDARGDRRDDEVPGDVLPCQQGQRAELRERVRSRVRVDRAHAGQAGVQRDEHVQCL GLAHLADDQAVRAHPQRLLDEAAQRDLAVALQVRLAALQPYDVAHRDLQLEDLLHGDHPL PRADGRGQAVEQGGLARLGGPADEDVHARVHGRVQEAGRRRREGTAPDEVVQPARPGDEL PDVHGPVPPRDVWDGHVQARAVRQGRVDERHRQVQPPARGLQHDFDEVLHLLLGQDDARQ LGAAGPRAVDGVRRVQPDLLHGGIVHEPLERPEARDAVEQVLPRRHGILQVRQRADHRAG LVVRGRVLDERQDPGVLTLRVDALPPDDLPDLVLENAHRIHVSLLCPIRRHPQRRTRLDQ EDTPFRRCVWSRTPRLWTTWRRTRPTDSCPQPARTAIRPWQGRPQAAGRAGRRSQEGGAG MAWSVRILGGAAPETWRVEHFPADADEQDRAVRERFPARSLRRCAAGPRSVTYAERAGRA PARGPELAVVTEHGPDAGRLVPLGVGGVSVGRGGARLLLDDPSAPSRPVRLRLAPTGLHV HDGPRGTGRLWGGRSPLPVGRTALGLVRGPGAALPRPIVPEPPAVDLGSAPARQSVVIPL VAALGPLVLGVALVLMMGNPMFLLFGVLSVTVALVMLAMQRRARLRHARLLAARADTVVR RRARAALSPGAVARAVRSGATDRFGLTAGADEAVAVSWGSGVGALSLSRDDPDEAWVEAV TSRRTVMTTSPPESRAVVAGPPRDVAGVCRWAVFQLLRHAVAADGAFVVEAGGVRRTWWS GGSGPQLLVTAPEDAALDPAWRAWRAAIGDDAGTMATARTDLPWTRYDFTGPPPAPGDAV VDLRGCTVVVPAEQQRFEDVAADGLADGTLVAWLTELADDVVDLGLLPTDDGDGTLTPPG QVGTRDAVDGLTVTLAGGGDETGVVEMDLAADGPHLLIAGTTGSGKSDLLLSLLLGAAAH HPPAEVAFLLLDFKGGASFGPLGALPHTMSLETNHVGTASLRALSAIRAELHRREALFAQ AGVSDYPGFRRRHPDAALPRLVVAIDELRVLVDDHPDAAAVLQRLAATGRSLGFHLILAT QRATGAVGSDLRSNLGSTIALRTATEQESWDLVGTAAAARLDPRRPGSAILSTAGRPTVS FRASQWTVDGGTPVWRRLGEAAAAPAIAPWEAVVAVLVENYAAGDWPTPPPVVTPALPER WVPDRGRRAEATALALLDDAAHGRHRPWRWPTGAEGRTAWIVEAAGGRAETLAAVVEVAM RSGGPVAVLDGTGEAAAAARSGVPELTPDSEGAGEAVLARLRELAAAGGTAVVTGWNAWS GLRVGDTYRTVEEEVHDWLGRPAATGLRLAVFGGRELATGRLLLHLPHRFFVPAGTNAEH RLIWPRLTEVEPLPGRAVHISPAVPEPGMPCQLAFPASA >gi|289556828|gb|ADCD01000080.1| GENE 82 97060 - 97545 -60 161 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGQLAGPFRARAVRERCVDSAGRRGARRLYRKRSACRSVPAAMVALVFSATALAGSLMTQ APSSVPWVLVAALLPVRALLGGDGAARGMSGQRPPRSIRPATFRTSSPDDAAADRSPSPS EARRRRGAMSDCSRPTRPRRPRSTENASPGGVGAESTVLWR >gi|289556828|gb|ADCD01000080.1| GENE 83 97727 - 98305 439 192 aa, chain + ## HITS:1 COG:SMb20022 KEGG:ns NR:ns ## COG: SMb20022 COG0412 # Protein_GI_number: 16263773 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Dienelactone hydrolase and related enzymes # Organism: Sinorhizobium meliloti # 1 192 1 186 188 79 32.0 3e-15 MAQIILFHHALGLTDGVRALADQIASGGHTVHTPDLYDGRTFATVDEGVSHAEQIGFEEI GQRGMRACAEHQEASVVAGVSMGVMPAWRAAQVVPGFRACIAMAGALPLDAFAPLWQPHT ALQIHLGTRDPWALEGDLETARSYAATAEHPDRPADLFEYDTDRHLFMDSSTADFDADLT AVLVRRIHELLA >gi|289556828|gb|ADCD01000080.1| GENE 84 98325 - 99725 933 466 aa, chain - ## HITS:1 COG:no KEGG:Mlut_07470 NR:ns ## KEGG: Mlut_07470 # Name: not_defined # Def: major facilitator superfamily transporter # Organism: M.luteus # Pathway: not_defined # 1 465 1 466 467 716 97.0 0 MDFGAYGRLLQDPRIRHLLAVGFIARFPHTAAGVILTLHVALTLGLGYGQAGLAGAAMTL GIAVGSPWRGRVVDAKGLRRALLPSVIAEAVIWPIVPWLPFWPMLLAVFLGGVFSLPIFS VVRQGLGVLTHGKDRQTAFALDSIVTETIFMMGPALGAVVAATWSSALGLTIVGLSSALG GILLMWFNPPTRSSQLAVVGPATEDPYTEEQDRQEAIAQAVTAAPMHVEMAAPSLATGAL PAITEAIPIVTGALPVIAADGSGPTTTAPRRAERLRQWRRTHFSWVGSEVLGVLVVSMAA GIVMVGTEVSMVAELESQGAAASVGLVYAFWCGASAVGGLFYGAWGRQVHPYLLMALFAV ATVPLALVDGVWALALASIPSGLLTAPTLASASSRLSHLVVEERRGEAMGFYGSAMTAGA AMGAPLAGVFIDGVAPSAGYVFAAASGFVFVLLAALATVARGRRST >gi|289556828|gb|ADCD01000080.1| GENE 85 99797 - 101209 795 470 aa, chain - ## HITS:1 COG:Cgl2859 KEGG:ns NR:ns ## COG: Cgl2859 COG4894 # Protein_GI_number: 19554109 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Corynebacterium glutamicum # 290 466 6 181 182 117 33.0 7e-26 MGLAVAVVLVALAVQAHHLDDVLLVPEDVVVEVAVAVVGGLLGDLGGADGAVPHEGGDAV QGLRGEGEVLQRGAVMAAPVHGLLVPQAVEEVVVLHGELDALADVLAEPRVHGAGVAAAH RQVHTAVGEVLQVRVVLGQTHRVHGGDQGRSRGELEGLGLRGQVGQQRGRVARGHEGRVV VLAGREHLEARLLGVAGDLDGVLDPLMLGGGGPVRRIGGDVADREDAELHGVLLSVPGGG SHGAGRAVAVFFKNELYPTTSRPVLGIPPGPTRQTGPMSPAFDAGRLAHTDVLTLQQVTS FLSNDIQVTDPDGRTVVSVVTTGGGLGRMLMGNRSFDVVDGDDGRVLFRLADPATFGRDR FAILDADGLPLAHLVRQFAFLRTSVDVEVVDGTCFAVTGDLWDHDYAMTVGQQPIARVTA RFGGVMNALAGRSRYEMRLDPGMPPVVRCAVLGTAIALDLIRAKDRRSNS >gi|289556828|gb|ADCD01000080.1| GENE 86 100520 - 102397 1632 625 aa, chain + ## HITS:1 COG:Cgl1604 KEGG:ns NR:ns ## COG: Cgl1604 COG2141 # Protein_GI_number: 19552854 # Func_class: C Energy production and conversion # Function: Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases # Organism: Corynebacterium glutamicum # 1 355 1 355 371 486 69.0 1e-137 MQFGVFTIGDITADPTNGTAPTEHQRIKDTVKIARHAEQAGFEVFATGQHHNPPFVAPGN PPTLLAYLAAQTETLQLSTATTLITTMDPVRLAEDYAYLQHLADGRVDLTMGRGNTGPVY PWFGKDIRQGIQLAVENYNLLYRLWHEETVDWSGHHRTPLQDFTLTPQPLDGVAPFVWHG SIRSPEIAEQAAYYGDGYFHNNIFWNKEHVIQMVRLYRQRYEYYGHGKAHQAYVALGGQA YMAKNSQDAVAEFRPYFDNAPVYGHGPSLEDFSRMTPLTVGSPQQVIERTLTFRDWVGDY QRQMFLIDHAGLPTDTVLRQIDLFGEEVLPVLRKEFDALRPDDVPAAPTHEFLVARARRG EAPVPGGKEGSQAQLDRAAAAEQRATADAAKGRCRAVTTPSTPDASDPFTPQARHLAVVS GGSGDPSQTRMLAERLAESASAALSEHGVVPQIHLITLRELATDIAQALVTFAISPALRA ALDEVAQADAVIAVSPTYKASYSGLFKSFWDLAEPTSVVGVPVLLGATGGTARHSLMIDT AMRPLFAYLKARIVPTAVFAASDDWGEAAGVQESMRTDPLQSRIRAAGRDLAEITLNRPP RARAAAPADLDLEVTPFEQLLNPGP >gi|289556828|gb|ADCD01000080.1| GENE 87 102525 - 102917 327 130 aa, chain + ## HITS:1 COG:no KEGG:Mlut_07430 NR:ns ## KEGG: Mlut_07430 # Name: not_defined # Def: transcriptional regulator # Organism: M.luteus # Pathway: not_defined # 1 130 17 146 146 217 97.0 1e-55 MLTEVLERRLKQDCGMSLADYNLLLLLYESPEGRLRLGELASRMVFSPSRITYQVKTLVA RGLIDRRPVACDRRGFEAVLTDEGRSAFRRAAIVHARQADELFLGDLAPGEAESLTRIFS RLGRRLEGMC >gi|289556828|gb|ADCD01000080.1| GENE 88 103023 - 104240 920 405 aa, chain - ## HITS:1 COG:no KEGG:Mlut_07420 NR:ns ## KEGG: Mlut_07420 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 15 405 1 397 397 417 88.0 1e-115 MPPILRGVPMRTRTLTGVATAALGAVVVAGAGPALAQTTLTQGSAITAPAGACSLTIVDE ATAYTAAHCGAGQWQIGSTVRDVDGAAIGTVSALPGDSGVDAVRVALADDVDVVGDWSTR PASSVGVGETVYTHGSSVPLGAPNTVSHTQTFEAATVCDDAYADQVALDTASTHAGDSGG AVYDAQQRVVGVISGIAPVTFDAEGNVVGCDAQAMSSIMVPVESLDALDASAAPAAETTE TAPAIADVTGPVADEDLPTGGEPAVDESELTEFTPAEEEAIAAELKARAEAAAEEEAADA APAAEAPAAAPGVTDVVAAPAEGVAYGTRVVAQTDQGGFASVTVTAYDADGTVLGQDGLD LTGEYRAWLPVPAEVPAGGSVVVTVVDAAGAATDATVTLDGQLVG >gi|289556828|gb|ADCD01000080.1| GENE 89 104337 - 105209 725 290 aa, chain - ## HITS:1 COG:no KEGG:Mlut_07410 NR:ns ## KEGG: Mlut_07410 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 129 290 1 162 162 266 96.0 5e-70 MREKTAGENTADTAGIPWQGRDLSGPGVDGSANPLHVFDEDDGTSPAEWTAVMAALTDGS AGEREVTEVLARIRVFAAVVPTLAVDEDDVHDHADHTGHEHDVAAHGDKAADVALVTMRA PDGRQALPVFTNVPALTAWNPVARPVAVWLPRACLSAVDEGCELVVIDAGAEHTYVVRRP AVWSLAQQKEWTPAYRDQEIADEIAQVADLVPNLLNLGLAPGSGVATHTGSGAVMNGGGA GPELQIVAMPTRDADAAGVRLMTATLKTLLADLPLLAERADSVEITVRRP >gi|289556828|gb|ADCD01000080.1| GENE 90 105335 - 106120 669 261 aa, chain - ## HITS:1 COG:ML1261 KEGG:ns NR:ns ## COG: ML1261 COG0106 # Protein_GI_number: 15827647 # Func_class: E Amino acid transport and metabolism # Function: Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase # Organism: Mycobacterium leprae # 7 242 3 242 245 275 62.0 8e-74 MTPNAPALELLPAVDVQDGQAVRLVQGEAGSATSYGDPVTAALDWQRAGAEWIHLVDLDA AFGRGDNREVMRRVVEEIGVKIELSGGIRDDASLENALEMGAARVNLGTAALEDPEWTAR VIERFGDRVAVGLDVRGTTLAARGWTKEGGDLWEVLDRLEAAGCARYVVTDVTKDGTLKG PNTELLAQVCAKTAKPVVASGGISSLEDVAALAAMTGQGVEGAIMGKALYAGRFSLEQAL AVAGGATVEQARSEQPGPVAP >gi|289556828|gb|ADCD01000080.1| GENE 91 106311 - 106970 480 219 aa, chain - ## HITS:1 COG:Cgl2044 KEGG:ns NR:ns ## COG: Cgl2044 COG0118 # Protein_GI_number: 19553294 # Func_class: E Amino acid transport and metabolism # Function: Glutamine amidotransferase # Organism: Corynebacterium glutamicum # 14 216 5 208 211 258 64.0 5e-69 MARPTTVPGVRPRVAVLDYGSGNVHSALRAVERAGAEVELTRDPQAVQEADGLLVPGVGA YASVMRALTEVGGTRWIGRRVAGGRPVLGICVGHQILFDAGVEHGERTAGMGEWPGVVAE LPAEVLPHMGWNTVRPPEGSALFAGIEDERFYFVHSYGVLEWEFDQTISAMRPPQVTWAH HGADFIAAVENGPLSATQFHPEKSGDAGLQLLRNWLETL >gi|289556828|gb|ADCD01000080.1| GENE 92 106970 - 107692 524 240 aa, chain - ## HITS:1 COG:ML1259 KEGG:ns NR:ns ## COG: ML1259 COG0131 # Protein_GI_number: 15827645 # Func_class: E Amino acid transport and metabolism # Function: Imidazoleglycerol-phosphate dehydratase # Organism: Mycobacterium leprae # 44 240 11 210 210 224 60.0 1e-58 MGTARAAPRPAGTGRAHPHPPHPSRTGAAPARGGPVAAELISGRRARMTRTTSESDVYVE MDLDGTGRAEISTTVPFYDHMLTALSRHSQIDLTVRATGDTHIDVHHTVEDVAITLGEVL KTALGDKSGIRRFGEASVPLDEALARAVVDVSGRPYLVHEGEPEGQQYHRIGGHFTGSMT RHVFESITYHAAICLHMDVVRGRDPHHIVEAQFKAFARALRAAVEDDPRMTGVPSTKGAL >gi|289556828|gb|ADCD01000080.1| GENE 93 107732 - 108853 1017 373 aa, chain - ## HITS:1 COG:Cgl2048 KEGG:ns NR:ns ## COG: Cgl2048 COG0079 # Protein_GI_number: 19553298 # Func_class: E Amino acid transport and metabolism # Function: Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase # Organism: Corynebacterium glutamicum # 4 366 6 362 366 318 50.0 7e-87 MTDLSTLPLRENLRGLSPYGAPQLDVPYMLNTNENTHPVPEEVAAAIAERVAAVAGGLNR YPDREFTGLRHALAGYLGHGLTADHVWAGNGSNEILQQILQAFGGPGRTLLSFLPSYSMY PLLAGGTDTVFVDGGRADDHSLSAEHAAAMVREHRPHVVFLASPNNPTGTALDLATIEAV YAAQAENEAAGGPGAMVVVDEAYAEFALAGTRSALTLLPGRERLIVTRTMSKAFALAGAR LGYLAADPAVTDALRLVRLPYHLSAVTQATAEAALEHVDALLRTVEDIKAQRDRIVSTLR GLGLRPSVSDSNFVFFGHLEDASDVWRRLLDRGVLVRDVGIPHHLRVTAGTEAETTAFLT ALAEVLGETGHRS >gi|289556828|gb|ADCD01000080.1| GENE 94 108897 - 109271 277 124 aa, chain - ## HITS:1 COG:no KEGG:Mlut_07340 NR:ns ## KEGG: Mlut_07340 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 124 1 124 124 163 97.0 2e-39 MTLTTAQFAGSPATARPRPATIRLTRRGRLVLRGIPVIAAAVAATLAAAFFLGVLLSPAA VSADTAGPATQSVTVMPGDSLWTIATTVAPEADVYEVIATIDELNGLEGRAPAPGEELFV PAMR >gi|289556828|gb|ADCD01000080.1| GENE 95 109566 - 110282 541 238 aa, chain + ## HITS:1 COG:MT2793 KEGG:ns NR:ns ## COG: MT2793 COG1974 # Protein_GI_number: 15842258 # Func_class: K Transcription; T Signal transduction mechanisms # Function: SOS-response transcriptional repressors (RecA-mediated autopeptidases) # Organism: Mycobacterium tuberculosis CDC1551 # 9 238 3 217 217 231 56.0 8e-61 MSTTDDQPAARAPLTDRQRRIVQTIRDAIADHGYPPSMREIGDAAGLASLSSVTHQLGRL ERHGYIRRDPGRPRALEVLRDVDGTPLGEAASPAAAPSSQVSAIPAWHTGADGADSVPVP WVGRIAAGGPVLAEQQVEDVMAIPRRLTGEGELFMLRVTGDSMVDAAICDGDWVVVRRQE TAENGDIVAALLDDEATVKTFRRRDGHTWLLPQNTAYEPILGDHATVMGRVVTVLRSL >gi|289556828|gb|ADCD01000080.1| GENE 96 110331 - 112298 1586 655 aa, chain - ## HITS:1 COG:Cgl2468 KEGG:ns NR:ns ## COG: Cgl2468 COG1199 # Protein_GI_number: 19553718 # Func_class: K Transcription; L Replication, recombination and repair # Function: Rad3-related DNA helicases # Organism: Corynebacterium glutamicum # 1 653 41 664 665 491 45.0 1e-138 MVLQVARALESRRHLLVQAGTGTGKSLAYLIPALQHAMTQEDPVVVATATLALQAQIMKR DAPRLVEALKDELPREPVVALVKGRSNYLCRHKVDGGYPGDEGEEALFTVADDGGMIGSA TDGAAGPSSLLGKEVMYLRAWADQTETGDRDDLEVPVTDRAWRQVSVSAVDCLGASRCPQ AEECFSERARADAADADVVVTNHAMLAISAFEGLAVLPAYSAVVVDEAHELQDRVTGAVT GQLSGSIVHGAATSLRRHTTVAVEDLIEAGAALDRAFTDTPSGLIAAGPDEVQEQALTGV LTAARQCLSDLGQDKDKEADADGGRQMARSRILEVLEVVERMLAARPEADFPEVLWATRP GHFEPGVGWQPGDETDPPQLYVAPLSVAGKLREGLFGKATTVLTSATLTVGSGERRFDSV AGDVGLAGPDAPKFEALDVGSPFDYPRQGVLYVARHLPRPGRTASPESLDELEALLRASQ GGALGLFSSRRAAEDAAAEMRRRLGPKATILCQGDATLSALVRQFAEEPDTSLFGTMSLW QGVDVPGNSLRLVVIDRIPFPRPDDPLSQARTRDVARHGGNGFMRISATHAAVRMAQGAG RLVRSVTDRGVVAVLDPRLATERYGGYITSALPDFWRTTDGDVVRGVLARLASGD >gi|289556828|gb|ADCD01000080.1| GENE 97 112427 - 113731 635 434 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149914878|ref|ZP_01903407.1| 30S ribosomal protein S2 [Roseobacter sp. AzwK-3b] # 24 387 23 386 425 249 42 6e-65 MTEVEYRQLRLERVVLAGVWTEGSAEDAENSLRELAALAETAGSEVLDGVIQRRATPDPA TFLGKGKAQELAEIVALSGADTVVVDSELAPSQRRALEDVVRVKVIDRTALILDIFAQHA SSREGRAQVELAQLEYLLPRLRGWGESMSRQAGGRAAAGEGIGSRGPGETKIELDRRRIR TRMAKLRRDIAGMKPAREAKRANRRRNRVPSVAIAGYTNAGKSSLLNRLTHAGVLVENAL FATLDPTVRKAMTPDGIGYTLSDTVGFVRNLPTQLVEAFRSTLEEVADADVILHVVDGSH PDPEGQIAAVRSVFAEVDAHRIPEIIVLNKADAADPAVVARIRSKEPHAVVVSARTGEGI DELERAIAATIPRPDVRLELLVPFTRGELVSRLHSADAEILAEGYEEGGTRLSVLVREDI APDFAEFVVEADAS >gi|289556828|gb|ADCD01000080.1| GENE 98 114255 - 115601 960 448 aa, chain + ## HITS:1 COG:Cgl2725 KEGG:ns NR:ns ## COG: Cgl2725 COG2072 # Protein_GI_number: 19553975 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted flavoprotein involved in K+ transport # Organism: Corynebacterium glutamicum # 98 436 21 375 390 212 39.0 1e-54 MGGVLFASAGSGRTGVRTGAGCGAIDGGRSGGSTGGGDQANSRNMPTILAAARRRRHPSP VGEHAPAVPTLGRMTPHPDRHVTVLVVGAGQAGLSAAHHLRRRGFQPVGPGEAPRPAPEG SPGTFAVLDAEDRPGGAWLHRWDTLTMGSVNHIHELPGHLVPPADPAARANAVLPAYFAE YEERFDLRVHRPVRVSRVERIGEPGAAEGFRVHTDAGTWTCGFLVNATGTWTSPHWPAVP GRREFRGRQLHTHDYRDPEEFARRRVVVVGMGVSATQHLAEVSRVADTLWVTRREPQWID DPDPGHLAESVEGVDERTRLGLAPRSVVSATGMFRSDWVREAQARGVLERHPMFERIEPD GVRMPDGSLERADVILWATGFRPAVRHLAPLRLRTPDGGIRAAHGRALDEPRLFLIGYGP SQSTVGANRAGRDAVRAILADLRAAGAA >gi|289556828|gb|ADCD01000080.1| GENE 99 115607 - 116254 476 215 aa, chain + ## HITS:1 COG:SA0499 KEGG:ns NR:ns ## COG: SA0499 COG2813 # Protein_GI_number: 15926219 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S RNA G1207 methylase RsmC # Organism: Staphylococcus aureus N315 # 8 174 2 173 202 112 35.0 6e-25 MVAVTSPAHYFSPDPGTPERRRSVDVELAGRRVTLQTANGVFSPDGIDKGTAALLSAVPA PPARGAFLDVGAGWGPLALTLALASPEAEVTGVEVNERSLALARDNAAAVGASNARFLTP EQVPDDARFDLVWSNPPIRIGKAALHDLLAQWLPRLAPGGEAWLVVQKNLGADSLLPWIA GMLQEQAPGEFTATRAATVKGFRILRISRAAGSSS >gi|289556828|gb|ADCD01000080.1| GENE 100 116283 - 117602 614 439 aa, chain + ## HITS:1 COG:ECs0342 KEGG:ns NR:ns ## COG: ECs0342 COG1249 # Protein_GI_number: 15829596 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes # Organism: Escherichia coli O157:H7 # 319 435 333 446 450 111 47.0 2e-24 MSSLNTVKDTATAAGTAELETDILVIGWGKGGKTLARTLGSQGRKVTLVERDAGMVGGTC VNVACVPTKALVHRADAVRPGDDPHAAVASAWDFRDALTSKLRDANRAMLEDLDAVTLVQ GEARSTGERTVEVRPAEAADGDDDGERLTIRARHVVVNTGTTPLRPEMPGVDLPGVHDSE TLQLQMDRSRAPRRRRRLRPRGPGAGLHAGRLRRRGDRPGAGRADPARRVRRGPRLPGRG PAGPRRAPGHRGLRHGLRRGRRRPARGPRGGRADRRGHRGAGHGPRVDRRGPAPGGRRHR AGREGLHRRGRAPAHLGADRVAVPNTVFTTPPLGSDGMTAEQARESGHEVKAASKPVATI AAMPRPKIEEDAHGVIEVVVDAATDLVLGARLHCVEAQELVNLVTLAMRADVTASALRDG IWTHPSATEALNEVLGELS >gi|289556828|gb|ADCD01000080.1| GENE 101 116854 - 117297 147 147 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 1 128 168 297 458 61 31 3e-17 RRAVVVGSGPVGLELASMLAGFGAEVTVLVRGEQILPDESDAVRDSLVEALQDRGVRLAT GASATGFAEADGGLRVDLEEGEPIAADIVVLATGRASTAEARHPAAAGIELDEKGFIAVD EHLRTSAPTAWPCPTPSSRRRRSARTA >gi|289556828|gb|ADCD01000080.1| GENE 102 117935 - 118414 206 159 aa, chain + ## HITS:1 COG:no KEGG:Bfae_27760 NR:ns ## KEGG: Bfae_27760 # Name: not_defined # Def: hypothetical protein # Organism: B.faecium # Pathway: not_defined # 4 144 98 245 269 78 36.0 8e-14 MTYERHGVLEVDGGYITPSNEFFRSSWASAIQGRHIRFGTPEHFTLWSRAAVRLAGMLEG RRVWVIRAPFAARTESGAEVKPDKGLTPEEWRGRFSIYYEVLRDLGFPILDVPQNLCLSA DDHEWGPAPMHYSDDFYRWVSGQIPRMPRLQASASPRLS >gi|289556828|gb|ADCD01000080.1| GENE 103 118451 - 119398 805 315 aa, chain - ## HITS:1 COG:Cgl1898 KEGG:ns NR:ns ## COG: Cgl1898 COG0253 # Protein_GI_number: 19553148 # Func_class: E Amino acid transport and metabolism # Function: Diaminopimelate epimerase # Organism: Corynebacterium glutamicum # 19 315 5 277 277 152 41.0 1e-36 MTEKTAAAAAPTSDAAPRVPFTKGHGTGNDFVLLADPDGNVHLEAAQVAVLADRHRGIGG DGVIRAVPSRHVEEGRALLAAHPEAEWFMDYRNGDGSIAEMCGNGVRVFVHFLAEKGLVD LAPGESITIGTRAGVKTVSRLAHGYAIDMGPWSYLDPELAEEAASDAMVLAAGLADPRPA LSVSMGNPHTVVPLASFEDLEGLDLTRAPEVDPAPSHGTNVEFVAAHEPLVREGVGRARM RVHERGVGETQSCGTGACAVAVAMRAWSGEGGSDSWLVEVPGGVLGVDFVAHPDGTEHVV LAGPAELVFDGELTV >gi|289556828|gb|ADCD01000080.1| GENE 104 118505 - 120472 763 655 aa, chain + ## HITS:1 COG:no KEGG:RMDY18_14470 NR:ns ## KEGG: RMDY18_14470 # Name: not_defined # Def: beta-lactamase class A # Organism: R.mucilaginosa # Pathway: not_defined # 1 281 1 283 344 139 41.0 4e-31 MLGAVRVGDEVHAEDAAGHLHEPRVGAALAGPRAHGHRHGARARAAGLGLPHPALVHAHA RPAHALADEGLVGRHELHVGAVRRRRVHLRGAGEVQPLEVLEGGQRHHRVRVAHGDAQRR AGVGQAGGEDHRVRGRLLGQLRIEVGPRAHVDRVAVGEAADRLHAGPRADGDGLAGGEVH EPLLREEVHEHAHPVAAHLRDRPVPVAVVHEPLGLGVRGEQGPALLDVAGGHGADHAVPA DPPVSVREHRHLGGLEVDVAVRVGQEHEVVAGAVALREGHAGGGVGRRGRGGGGLLGHGA SLGAGHHGQRLRDDVRGECVHPVHARVGAEPRLLPAGEAPGGDDGLLGGLLRRERAVQDG EHLRVADGPGGRGPLAQPVRAGHVQRADLVQQPGGEHALHPGLDPLVQHGPLQAQADLHH RRHGGIVLAPRHERGEGPARDPVDLEGADETPRVGHLGGGLGVDGGQLGPQGRLPALGQL GLHRGPHLRVRGRELEHVQRRPHVQAGAAHEDRGPPPGADVREHAAGRGLEGGHRGLLPD VEHVQQVVRHALALGLGHLGGADVHAPVELQCVPVDDLPVQGVRQRDGEGGLARRRRPDH GDDGRAGGAHQDRGRSVGMPRLVAPAPPEAPGVGTPQDSAWARSQASPARERRSE >gi|289556828|gb|ADCD01000080.1| GENE 105 120334 - 121869 1211 511 aa, chain - ## HITS:1 COG:Cgl1904 KEGG:ns NR:ns ## COG: Cgl1904 COG0621 # Protein_GI_number: 19553154 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 2-methylthioadenine synthetase # Organism: Corynebacterium glutamicum # 23 509 29 516 526 654 68.0 0 MTDPTLEAPAPRQTSARPHEGLTYEVRTFGCQMNVHDSERISGLLESTGYAPAAEDAQAD LVVFNTCAVRENADNRLYGNLGNLRAVKDAHPGMQIAVGGCLAQKDQAAIQRKAPWVDVV FGTHNIGSLPVLLERSRHNAEAEIEILESLEVFPSTLPTKRDSTHSGWVSISVGCNNTCT FCIVPSLRGKEKDRRPGEILAEVQALVDAGAVEVTLLGQNVNTYGVEFGDRGAFAKLLRA CGQIEGLERVRFTSPHPAAFTDDVIDAMAETPNVMPQLHMPLQSGSDTVLKAMRRSYRSK RFLGILEKVRERIPHAAITTDIIVGFPGETEEDFQDTMRVVEASRFSSAFTFQYSIRPGT PAGEMADQVPKAVVQERYERLVALQDRISAEEMATLVGTRQELLVTADSGTKAAERGRLS GRARDNRLVHFSVPAGAPTPRPGDFVSVTVTEAHPFFAVADPAPEDYSLRRSRAGDAWDR AQAESCGVPTPGASGGAGATSLGMPTLRPRS >gi|289556828|gb|ADCD01000080.1| GENE 106 121916 - 122851 536 311 aa, chain - ## HITS:1 COG:MT2805 KEGG:ns NR:ns ## COG: MT2805 COG2137 # Protein_GI_number: 15842275 # Func_class: R General function prediction only # Function: Uncharacterized protein conserved in bacteria # Organism: Mycobacterium tuberculosis CDC1551 # 143 302 11 165 178 91 46.0 2e-18 MWLELAGVPEADPPAAARGVEEPPGAPTDDPPLATAENGSTAAPSGPAAAPDEAGPPGLG VLLGRASDLPSPAPGAAARVLPWSADARHESGGRGARGASSEARRARRRTARPVATDAAS APEEANTREDARPRRRPGPAPLPADPREREEAAREVVLRQLALGPRSRGQLEAKLADREA EPELIARVLDRFEEVRLVDDAAFAEVWVRSRHRSKGLARRAIGHELRQKGVDRDVAAEAL EAIDGEDERAAALELVRRRLRGRRVPAGNGPDARAERDKVTRRLVGMLGRKGYGGGLAFA VVKEVLGELEE Prediction of potential genes in microbial genomes Time: Thu May 26 08:02:12 2011 Seq name: gi|289556825|gb|ADCD01000081.1| Micrococcus luteus SK58 ctg1119142780282, whole genome shotgun sequence Length of sequence - 2827 bp Number of predicted genes - 6, with homology - 6 Number of transcription units - 5, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 32 - 373 84 ## gi|224284017|ref|ZP_03647339.1| Repressor protein CI from prophage - Prom 433 - 492 4.2 + Prom 4 - 63 3.4 2 2 Tu 1 . + CDS 218 - 649 956 ## ECUMN_1399 replication protein from bacteriophage origin + Prom 674 - 733 1.9 3 3 Op 1 . + CDS 794 - 1912 832 ## COG0477 Permeases of the major facilitator superfamily 4 3 Op 2 . + CDS 1888 - 2154 182 ## APECO1_O1R82 hypothetical protein 5 4 Tu 1 . - CDS 2151 - 2519 453 ## APECO1_O1R81 hypothetical protein - Prom 2598 - 2657 1.8 6 5 Tu 1 . + CDS 2518 - 2790 340 ## EcSMS35_B0004 regulatory protein Rop Predicted protein(s) >gi|289556825|gb|ADCD01000081.1| GENE 1 32 - 373 84 113 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|224284017|ref|ZP_03647339.1| ## NR: gi|224284017|ref|ZP_03647339.1| Repressor protein CI from prophage [Bifidobacterium bifidum NCIMB 41171] # 42 112 1 71 281 145 95.0 9e-34 MRIGDSVHWFIPPIGFTQNGKQHFKLSLGQIFSCLGLPKAHCIIFQGYALFHTTSLVHAT IITARGKIVNTHGVRYLSLAVIDLTYEHKKEPLTQEQLEDARRLKAIYRKKEK >gi|289556825|gb|ADCD01000081.1| GENE 2 218 - 649 956 143 aa, chain + ## HITS:1 COG:no KEGG:ECUMN_1399 NR:ns ## KEGG: ECUMN_1399 # Name: O # Def: replication protein from bacteriophage origin # Organism: E.coli_UMN026 # Pathway: not_defined # 19 141 41 163 299 235 97.0 3e-61 MEQRITLKDYAMRFGQTKTAKDLTKRQFKVLLAILRKTYGWNKPMDRITDSQLSEITKLP VKRCNEAKLELVRMNIIKQQGGMFGPNKNISEWCIPQNEGKSPKTRDKTSLKLGDCYPSK QGDTKDTITKEKRKDYSSENSHV >gi|289556825|gb|ADCD01000081.1| GENE 3 794 - 1912 832 372 aa, chain + ## HITS:1 COG:AGl1300 KEGG:ns NR:ns ## COG: AGl1300 COG0477 # Protein_GI_number: 15890776 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 2 347 24 369 394 284 46.0 2e-76 MPVLPGLLRDIVHSDSIASHYGVLLALYALMQFLCAPVLGALSDRFGRRPVLLASLLGAT IDYAIMATTPVLWILYAGRIVAGITGATGAVAGAYIADITDGEDRARHFGLMSACFGVGM VAGPVAGGLLGAISLHAPFLAAAVLNGLNLLLGCFLMQESHKGERRPMPLRAFNPVSSFR WARGMTIVAALMTVFFIMQLVGQVPAALWVIFGEDRFRWSATMIGLSLAVFGILHALAQA FVTGPATKRFGEKQAIIAGMAADALGYVLLAFATRGWMAFPIMILLASGGIGMPALQAML SRQVDDDHQGQLQGSLAALTSLTSIIGPLIVTAIYAASASTWNGLAWIVGAALYLVCLPA LRRGAWSRATST >gi|289556825|gb|ADCD01000081.1| GENE 4 1888 - 2154 182 88 aa, chain + ## HITS:1 COG:no KEGG:APECO1_O1R82 NR:ns ## KEGG: APECO1_O1R82 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_APEC # Pathway: not_defined # 1 88 25 112 112 139 100.0 3e-32 MEPGHLDLNGSRRHLANGFTTPRIGANQFLRRTVNAQTNPWQNISIASAISSSRTRRISG SVGSWPRVRMIVLLSLRTRLGWRGCLTG >gi|289556825|gb|ADCD01000081.1| GENE 5 2151 - 2519 453 122 aa, chain - ## HITS:1 COG:no KEGG:APECO1_O1R81 NR:ns ## KEGG: APECO1_O1R81 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_APEC # Pathway: not_defined # 38 88 104 154 167 89 86.0 4e-17 MGVMIPMKRERMLTIRVTDDEHARLLERCEGKQLAVWMRRDQRKITQGQCQRFVNTDVGV PQGSQQHPAMQIRNIMVQGADFRVSRLYETRKPKTIHVVAQVADVLQQQSLHVRSRIGDS FC >gi|289556825|gb|ADCD01000081.1| GENE 6 2518 - 2790 340 90 aa, chain + ## HITS:1 COG:no KEGG:EcSMS35_B0004 NR:ns ## KEGG: EcSMS35_B0004 # Name: rop # Def: regulatory protein Rop # Organism: E.coli_SECEC # Pathway: not_defined # 1 61 1 61 74 114 100.0 8e-25 MNRNPPYTEASVTKQEKTALNMARFIRSQTLTLLEKLNELDADEQADICESLHDHADELY RVGTKVEFKPFRFQLIAKQRCSFNRHRPQH Prediction of potential genes in microbial genomes Time: Thu May 26 08:02:26 2011 Seq name: gi|289556823|gb|ADCD01000082.1| Micrococcus luteus SK58 ctg1119142776951, whole genome shotgun sequence Length of sequence - 648 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 273 546 ## COG1396 Predicted transcriptional regulators - Prom 374 - 433 4.2 Predicted protein(s) >gi|289556823|gb|ADCD01000082.1| GENE 1 3 - 273 546 90 aa, chain - ## HITS:1 COG:STM2748 KEGG:ns NR:ns ## COG: STM2748 COG1396 # Protein_GI_number: 16766060 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Salmonella typhimurium LT2 # 1 85 23 107 118 68 42.0 2e-12 MIPKRLRDARKNAGISQEKLAELVDVEGINIRSRISSYEVGRVEPSFNLMVKIAAVLNYP ECYFYTIDDALAQTILEIHLNKNNSSHNPY Prediction of potential genes in microbial genomes Time: Thu May 26 08:02:28 2011 Seq name: gi|289556818|gb|ADCD01000083.1| Micrococcus luteus SK58 ctg1119142780354, whole genome shotgun sequence Length of sequence - 4293 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 1, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 13/0.000 + CDS 72 - 2432 1155 ## COG0321 Lipoate-protein ligase B 2 1 Op 2 . + CDS 2429 - 3436 1021 ## COG0320 Lipoate synthase 3 1 Op 3 . + CDS 3463 - 4275 809 ## Mlut_13380 hypothetical protein Predicted protein(s) >gi|289556818|gb|ADCD01000083.1| GENE 1 72 - 2432 1155 786 aa, chain + ## HITS:1 COG:Rv2217 KEGG:ns NR:ns ## COG: Rv2217 COG0321 # Protein_GI_number: 15609354 # Func_class: H Coenzyme transport and metabolism # Function: Lipoate-protein ligase B # Organism: Mycobacterium tuberculosis H37Rv # 572 756 20 195 230 182 56.0 2e-45 MRRHASRAVQHGVGRRPEHGVDTQRVVPGPPGGSGLLHRHLEAGEGEPLVRQPAQQIPVV LPRRSPGHGVGVQSRRLRVDERGRPGVADRGQRLAHVDGVLPGGVLPGGTRVRHPRRRPA LRRPVLRARRVHRGAGRHRARRLRRPLRRVAQGRRPPQPHGAAAQGQRGGQPGGHEDAPA WRRPPSARERAPSRSRASSPASPRGPGARQHRGQQVRHLGGGGLSQRDRLGPGRRVYGCG GLFRARPRRRVRGERRIEQQRELGGRFGDQDGQRRPMPGGARRPTGERVPAQGGPRMDVT RRPHRRRRPRFRPGPLHRGERLGGREARRRPGPRRPADHPGDAEVGEGRAAVDAEQDVRR GHVAVHHPLAVQARESLGDRDEHGDGLPRAQGSDPLHHVLQRAGRAVLGEDPEAPVRLHH AEHAQQMGMRDPSGLRLRRQRIRRRAGTGHLQGGPDAPTVLDEPDLRLGARAEQPDGFPA RGARRSRARLRRPLRFGLRPAADASGRAAVRLVPVPHRSPLSAAPSVPAQGAACPRASRR LSTGPGPRTTVDVMPETPLPPLRVLGLAPDLVDYHAAWDAQRALHADVVAGRSDGEFLLL EHEAVYTAGRRTEDAERPTDGAPVVDVDRGGKITWHGPGQLVGYPVVRLRDRAHVKDYVW FLEELLIRTAAEFGVTAVRVDGRAGIWVLADRDDDGAARPDRKVGAIGLSIHDGVSMHGF ALNCSNSLAPYEGIIACGITDAATTTLSVETGRTITPADVVPVLTRHLDELGPAYIAVTP TEGIPA >gi|289556818|gb|ADCD01000083.1| GENE 2 2429 - 3436 1021 335 aa, chain + ## HITS:1 COG:Cgl2160 KEGG:ns NR:ns ## COG: Cgl2160 COG0320 # Protein_GI_number: 19553410 # Func_class: H Coenzyme transport and metabolism # Function: Lipoate synthase # Organism: Corynebacterium glutamicum # 1 333 1 335 348 449 64.0 1e-126 MSLAPEGRRLLRVEARNAEVPVERKPEWIKAKVHMGPEYIGLKNKVKSAGLHTVCEEAGC PNIFECWEDREATFLIGGDICTRRCDFCDITSGKPRPLDMEEPQKVAENIREMDLRYATV TGVARDDQKDGAAWLYAETIRRIHALNPGTGVEILPPDFGAVPELVQQVFDARPEVFAHN LETVPRIFKRIRPAFTYEKSLKVLTMAKADGLVTKSNLILGMGEEDHEIDQALVDLHEAG CDIITITQYVRPSKLHHPIDRWVKPQEFVQWSQRAEEIGFQGVMAGPLVRSSYRAGKLYA QAMQRLGRTLPENLAHLAGEKTARQEASAVVAQMS >gi|289556818|gb|ADCD01000083.1| GENE 3 3463 - 4275 809 270 aa, chain + ## HITS:1 COG:no KEGG:Mlut_13380 NR:ns ## KEGG: Mlut_13380 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 270 1 270 270 419 97.0 1e-116 MTKNSQPPASSSGSTSATLKEVKAMQRERRRHEKEQTKAQRRDKRAAKGPGVISQLKQAY AMTKAHDPKVGLWMLLAFLAALVIGLVIGLLLDNWITWLLIAIPFGVLAAVVILNRKARR AGFAQLEGRPGAAGAALSTLGRGWIVPEQPAAVNPKTQDLVYRAVGRPGVVLVTEGPSPR VAALVGKEEKAMRRFLPGVPVTVVESGNGQGQVPLHELPGTLKGMKKALTAQEVQAVDKR LTALNTNRLPIPKGVDPNKVRPSRRAMRGR Prediction of potential genes in microbial genomes Time: Thu May 26 08:02:46 2011 Seq name: gi|289556778|gb|ADCD01000084.1| Micrococcus luteus SK58 ctg1119142780311, whole genome shotgun sequence Length of sequence - 37370 bp Number of predicted genes - 38, with homology - 36 Number of transcription units - 21, operones - 8 average op.length - 3.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 3 - 480 382 ## COG3871 Uncharacterized stress protein (general stress protein 26) 2 1 Op 2 . - CDS 577 - 1029 461 ## COG0757 3-dehydroquinate dehydratase II 3 2 Tu 1 . + CDS 1242 - 1682 288 ## COG0526 Thiol-disulfide isomerase and thioredoxins 4 3 Tu 1 . - CDS 1713 - 2489 461 ## COG1443 Isopentenyldiphosphate isomerase 5 4 Tu 1 . + CDS 2341 - 3036 429 ## Mlut_21250 hypothetical protein + Term 3098 - 3133 -0.4 6 5 Op 1 1/0.500 + CDS 3153 - 4274 737 ## COG0142 Geranylgeranyl pyrophosphate synthase 7 5 Op 2 4/0.250 + CDS 4276 - 5172 576 ## COG1562 Phytoene/squalene synthetase 8 5 Op 3 2/0.250 + CDS 5169 - 6875 1168 ## COG1233 Phytoene dehydrogenase and related proteins 9 5 Op 4 . + CDS 6872 - 7756 785 ## COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases 10 5 Op 5 . + CDS 7753 - 8115 311 ## Mlut_21200 hypothetical protein 11 5 Op 6 . + CDS 8112 - 8468 168 ## Mlut_21190 hypothetical protein 12 5 Op 7 . + CDS 8470 - 9021 462 ## Mlut_21180 hypothetical protein 13 5 Op 8 . + CDS 8889 - 9776 494 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 14 6 Tu 1 . - CDS 9794 - 11479 1255 ## COG0702 Predicted nucleoside-diphosphate-sugar epimerases 15 7 Tu 1 . + CDS 11614 - 15045 2982 ## COG0553 Superfamily II DNA/RNA helicases, SNF2 family 16 8 Op 1 . - CDS 13489 - 16413 1424 ## 17 8 Op 2 12/0.000 - CDS 16468 - 17763 961 ## COG1960 Acyl-CoA dehydrogenases 18 8 Op 3 . - CDS 17765 - 19132 984 ## COG1960 Acyl-CoA dehydrogenases 19 9 Tu 1 . + CDS 19214 - 20788 946 ## Mlut_21130 hypothetical protein 20 10 Op 1 . - CDS 20813 - 21226 358 ## COG3152 Predicted membrane protein 21 10 Op 2 . - CDS 21237 - 21869 447 ## Mlut_20880 hypothetical protein - Term 22105 - 22141 -0.6 22 11 Tu 1 . - CDS 22185 - 22697 884 ## PROTEIN SUPPORTED gi|239918553|ref|YP_002958111.1| acetyltransferase, ribosomal protein N-acetylase 23 12 Op 1 . - CDS 22777 - 23190 307 ## Mlut_20850 glyoxalase/bleomycin resistance protein/dioxygenase superfamily 24 12 Op 2 . - CDS 23236 - 24375 927 ## Mlut_20840 major facilitator superfamily transporter 25 13 Tu 1 . - CDS 24558 - 25286 570 ## Mlut_20830 ubiquinone/menaquinone biosynthesis methylase 26 14 Op 1 . + CDS 25583 - 26932 1088 ## COG2873 O-acetylhomoserine sulfhydrylase 27 14 Op 2 . + CDS 26934 - 28244 1087 ## COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases 28 14 Op 3 . + CDS 28241 - 29287 968 ## Mlut_20800 hypothetical protein 29 14 Op 4 . + CDS 29284 - 30315 896 ## COG0620 Methionine synthase II (cobalamin-independent) 30 15 Tu 1 . - CDS 30331 - 30945 590 ## COG1279 Lysine efflux permease 31 16 Tu 1 . + CDS 31017 - 31892 619 ## COG0583 Transcriptional regulator 32 17 Tu 1 . - CDS 31916 - 32986 824 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 33 18 Tu 1 . + CDS 33686 - 34990 682 ## gi|289706493|ref|ZP_06502847.1| hypothetical protein HMPREF0569_1137 - Term 34882 - 34913 4.1 34 19 Tu 1 . - CDS 35123 - 35389 122 ## COG0640 Predicted transcriptional regulators 35 20 Op 1 2/0.250 + CDS 35345 - 35719 214 ## COG0640 Predicted transcriptional regulators 36 20 Op 2 . + CDS 35719 - 36630 555 ## COG1230 Co/Zn/Cd efflux system component 37 21 Op 1 . - CDS 36819 - 37043 73 ## 38 21 Op 2 . - CDS 37107 - 37328 152 ## COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Predicted protein(s) >gi|289556778|gb|ADCD01000084.1| GENE 1 3 - 480 382 159 aa, chain - ## HITS:1 COG:DR1146 KEGG:ns NR:ns ## COG: DR1146 COG3871 # Protein_GI_number: 15806166 # Func_class: R General function prediction only # Function: Uncharacterized stress protein (general stress protein 26) # Organism: Deinococcus radiodurans # 3 158 31 191 193 76 30.0 2e-14 MGTQDPRARLLEKLAKVNVCMLTTAEQDGTLVTRPMGLQQAEDGGTLWFLTRATSDVAAD APQRPVNVAVQDKDFWASLAGHGQLVRDDARKKEFWNPATEAFFGEGSSPEDPQIVLVRV DVDTAQFWESPGAVATAVELVKAKVTGGTAEPGDSETVR >gi|289556778|gb|ADCD01000084.1| GENE 2 577 - 1029 461 150 aa, chain - ## HITS:1 COG:BMEI1061 KEGG:ns NR:ns ## COG: BMEI1061 COG0757 # Protein_GI_number: 17987344 # Func_class: E Amino acid transport and metabolism # Function: 3-dehydroquinate dehydratase II # Organism: Brucella melitensis # 9 149 15 155 167 167 60.0 9e-42 MTATPALPLLVLNGPNLNLLGTREPEVYGTATLDDVRALTEARAAEHGLTVDFRQSNHEG ELIDWIQEARTSHAAVLINPAAYSHTSIAIRDALAAVDRPIAEVHISNIHRREAFRHHSH VSAVADVVIAGAGVQGYALAVDWLAAAVRR >gi|289556778|gb|ADCD01000084.1| GENE 3 1242 - 1682 288 146 aa, chain + ## HITS:1 COG:Cgl2917 KEGG:ns NR:ns ## COG: Cgl2917 COG0526 # Protein_GI_number: 19554167 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Corynebacterium glutamicum # 1 120 1 120 124 130 58.0 5e-31 MATQDLTLEEFGSTVAENDTVLVDFWAGWCGPCRQFAPVFEAASEKHDDVVFAKVDTEDQ QQLAAMAGITSIPTLMAFRGGVLVFSQAGALPGTALEQLLDQVKGLDIAEVRRLAEEQQG QQGDAEPAQDEAVQSTAAHLDDVNAR >gi|289556778|gb|ADCD01000084.1| GENE 4 1713 - 2489 461 258 aa, chain - ## HITS:1 COG:Cgl2252 KEGG:ns NR:ns ## COG: Cgl2252 COG1443 # Protein_GI_number: 19553502 # Func_class: I Lipid transport and metabolism # Function: Isopentenyldiphosphate isomerase # Organism: Corynebacterium glutamicum # 82 249 4 172 189 155 50.0 8e-38 MGCSPRVTWDAPGCGVDLSTLATPGRRDRAEVTWPTSDGRPGSPATLRGMQTPATPSPHD RPSPVARPWMAVSDVPVAGPDDVERVVLLSPEGEAVGTEAKATVHRRTEDGGTPLHLAFS CHVYDEAGRFLLTRRALGKAAFPGVWTNGFCGHPGPGESPAEAVLRRAPQELGVEVSDVV EVLPDFRYRAADASGMEEHEICPVFRARMHGDPAPERDEVAEWCWVEPADLAAALAAVPR AFSPWLVEQWQQGAFDPR >gi|289556778|gb|ADCD01000084.1| GENE 5 2341 - 3036 429 231 aa, chain + ## HITS:1 COG:no KEGG:Mlut_21250 NR:ns ## KEGG: Mlut_21250 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 50 231 1 182 182 198 98.0 1e-49 MPLSVAGEPGRPSDVGHVTSARSRRPGVARVLRSTPHPGASHVTRGEHPMAFAALSRSAR LAGLSAAALLALTACGGQDSSDADASASTSAPASASAQGSESSSASASSLSAAPADYEAG TCFTAPLGARDLSSFETTDCEGAHTAEYLWAVPAVAEGEEADPAAAQTCTAQAQRLSEEK EDQLNGAVLTSSELGNYGTDEKHCVVYGVSGEWEGQIVDPEITLETASADA >gi|289556778|gb|ADCD01000084.1| GENE 6 3153 - 4274 737 373 aa, chain + ## HITS:1 COG:TVN0262 KEGG:ns NR:ns ## COG: TVN0262 COG0142 # Protein_GI_number: 13541093 # Func_class: H Coenzyme transport and metabolism # Function: Geranylgeranyl pyrophosphate synthase # Organism: Thermoplasma volcanium # 63 358 52 339 354 122 29.0 1e-27 MRRSVPRRVRHRGGAMGEARTGGEAALSGVTAELDAALRHAAAQAPGSAAFAELLDSLHV HVGAGKLIRPRLVELGWRLATADPVPPSGRAAVDRLGAAFELLHTALLVHDDVIDRDTLR RGQPAVHASARHRLEARGVPAADAAHAGVAVALIAGDVLLTQAFRLAATCAADIARAAEA AAVVFDAAAVTAAGELEDVLLGLSRHTGEEPDPDRILAMQRLKTAHYTVGAPLRAGALLA GADPGLARAMGEAGADLGAAYQVIDDVLGVFGDPGETGKSADGDLREGKATVLTAHGRRI PAVRALLDAGPATPADIEAARRALEEAGAREHALDVAAELTVRARERIAALPLDETVRAE FADACHAVLTRRS >gi|289556778|gb|ADCD01000084.1| GENE 7 4276 - 5172 576 298 aa, chain + ## HITS:1 COG:Cgl0607 KEGG:ns NR:ns ## COG: Cgl0607 COG1562 # Protein_GI_number: 19551857 # Func_class: I Lipid transport and metabolism # Function: Phytoene/squalene synthetase # Organism: Corynebacterium glutamicum # 7 292 12 294 304 206 44.0 5e-53 MAAPAPSPAALYTRTAHAAAAQVIRRYSTSFSWACRTLPRQARQDVATIYAMVRVADEVV DGVAVAAGLDEAGIRAVLDDYERACESAMASGFATDPVLHAFADVARRHGITPELTRPFF ASMRADLGIREHGAESLDAYIHGSAEVVGLMCLQVFLSLPGTRARTPGQRQELRAQASRL GAAFQKVNFLRDLAADHHELGRTYLPGAAPGVLTEARKAELVAEVRADLDAALPGIRALD PGAGRAVALAHGLFVALADRIEETPAAELAHRRVRVPDRQKARIAARVLARGRRGGRR >gi|289556778|gb|ADCD01000084.1| GENE 8 5169 - 6875 1168 568 aa, chain + ## HITS:1 COG:Cgl0606 KEGG:ns NR:ns ## COG: Cgl0606 COG1233 # Protein_GI_number: 19551856 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Phytoene dehydrogenase and related proteins # Organism: Corynebacterium glutamicum # 13 563 15 529 548 416 44.0 1e-116 MSARDTAPGPRTVVVGGGFAGLATAGLLARDGHRVTLLERGAVLGGRAGRWSEAGFTFDT GPSWYLMPEVIDRWFRLMGTSAAERLDLHRLDPGYRVYFEGHLHEPPVDVRTGHAEALFE SLEPGAGRRLRAYLDSASRIYGLAKDHFLYTDFRRPAALAHPDVLRALPALGPQLLGGLR SHVAARFQDPRLRQILGYPAVFLGTSPDRAPAMYHLMSHLDLADGVQYPLGGFAALVDAM AEVVREAGVEIRTGVEATGVEVADPPTAGVRWPGARLRDRLPVPGRPRGERGRRRRPGRV TGVAWRSDDGAAGRLDADVVVAAADLHHVQTRLLPPGRRVAESTWDRRDPGPSGVLVCVG VRGSLPQLAHHTLLFTADWEDNFGRIERGEDLAADTSIYVSRTSATDPGVAPEGDENLFI LVPAPAEPGWGRGGIRVRDGQGWRVDRAGDTQVEAVADRALDQLARWAGIPDLAERIVVR RTYGPGDFAADVHAWRGSLLGPGHTLAQSAMFRPSVRDADVAGLMYAGSSVRPGIGVPMC LISAEVVRDELRHDARRARPAGPGGSGA >gi|289556778|gb|ADCD01000084.1| GENE 9 6872 - 7756 785 294 aa, chain + ## HITS:1 COG:Cgl0603 KEGG:ns NR:ns ## COG: Cgl0603 COG0382 # Protein_GI_number: 19551853 # Func_class: H Coenzyme transport and metabolism # Function: 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases # Organism: Corynebacterium glutamicum # 2 285 5 283 287 253 51.0 3e-67 MIRTLFWASRPVSWVNTAYPFAAAAILTGGLPAWLVVLGVVFFLVPYNLAMYGINDVFDF ASDLRNPRKGGVEGSVLGDPGVRRRVLAWSVLLPVPFVAVLAGWSAMRGEWAAVLVLAVS LFAVVAYSWAGLRFKERPFLDAATSATHFVSPAVYGLVLAGATPTPALAVLLGAFFLWGM ASQMFGAVQDVVPDREGGLASVATVLGARRTVLLAAGLYAAAGLLLLATEPPGPLAALLA VPYVVNTLRFRRITDATSGAAHRGWQLFLPLNYVTGFLVTLLLIGWALTREAAA >gi|289556778|gb|ADCD01000084.1| GENE 10 7753 - 8115 311 120 aa, chain + ## HITS:1 COG:no KEGG:Mlut_21200 NR:ns ## KEGG: Mlut_21200 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 120 10 129 129 199 95.0 3e-50 MIYLLALLGVIGCMLLVDRRFELFLWQRPLPALLVLAAGVAYFFAWDLWGIAEGVFLHRQ SPYMTGVMLAPQLPLEEGFFLLFLSQITMVLFTGALRLLRGRGRDGRAATPADPTDGGSR >gi|289556778|gb|ADCD01000084.1| GENE 11 8112 - 8468 168 118 aa, chain + ## HITS:1 COG:no KEGG:Mlut_21190 NR:ns ## KEGG: Mlut_21190 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 85 1 85 117 139 95.0 2e-32 MTFLDLVLVFVGFALAVLVGAALVGRVRGGHLRAVAATLVALWVLTAVFDNVMIAAGLFD YGHELLLGVYVGQAPVEDFAYPLGSALLLPALWLLLTSRPRAGRRGRRPGRRPHPDDR >gi|289556778|gb|ADCD01000084.1| GENE 12 8470 - 9021 462 183 aa, chain + ## HITS:1 COG:no KEGG:Mlut_21180 NR:ns ## KEGG: Mlut_21180 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 183 20 202 202 218 98.0 6e-56 MLPLIPADLLRALGLILVPVAAVHAGWPSAAAMLLVFGSQWLTRWLAPGGALDWAAQAVL LLAGWLSVIGLYPRVPWLDLLVHAAASAVVACLTALVVGAWLRRRGTEAGQAVALLGRGL AGLGIAAAAVALGVVWELAEWWGHTAVTPEIGVGYTDTIGDLAADLVGAGVGAALAVRRG RTR >gi|289556778|gb|ADCD01000084.1| GENE 13 8889 - 9776 494 295 aa, chain + ## HITS:1 COG:Cgl0614 KEGG:ns NR:ns ## COG: Cgl0614 COG0463 # Protein_GI_number: 19551864 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Corynebacterium glutamicum # 45 276 3 237 251 140 36.0 3e-33 MVGAHGGDPRDRRGLHGHHRRPRRRSRRRRGRRRPRRAPGAHPVTPARPTVSVVVPVLDD AEHLRVCLALLAAQSRPALEVVVVDNGCVDDSAVLARAAGARVVHEPRRGVPAAAAAGLD AAVGELLVRCDADTRMPADWLERIVTRFDADPGLDALTGPGTFHDQPGLRGRVRAALYTG AYRWGAGAAVAATPVWGSNCALRAEAWQAVRTRVHRERGDVHDDLDLSFQLALAGRRIRF DPDLRVEVAGRIFHSLRQRVRQGRMAVTTLQVNWARLSPGRRWLRRAARARPRSR >gi|289556778|gb|ADCD01000084.1| GENE 14 9794 - 11479 1255 561 aa, chain - ## HITS:1 COG:Cgl0612 KEGG:ns NR:ns ## COG: Cgl0612 COG0702 # Protein_GI_number: 19551862 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Predicted nucleoside-diphosphate-sugar epimerases # Organism: Corynebacterium glutamicum # 32 519 46 533 535 498 53.0 1e-140 MASTQPSPVPAGATPAPHTSPLGLSLPEGRGRRVLVTGATGYVGGRLIPELLAAGFDVRA GARNPSDLADRPWSDSIEAVELDLTEADLVEAAMQDVHTVLYLVHSMGGGGDFVAQEQRI ADIVGTAADTAGVAQLVYLSGLHPDTVPVAELSDHMRSRALVAERLERAATPALTFEAGV IIGSGSTSFEMIRHLAERLPVMPGPSWLRNRVEPLAIRDVLYYLLQACALPEPVQLRAQI GNGHPQSFASVLVDYAKAAGLSRRIVIPTPLPLKNLAGFWIGTVTPIPVGVALPLAASLA EEAVVEDRSVRDLIPDPPGGLTSYMDAVRLALKREKEGPLDVTFDADLQSSADPAAPLPS DPEWAGTTVYTDERERESDLPAQEVWPVIESVGGANGWYSTPLLWKIRGLMDKLAGGPGL TRGRRDPDHLRRGDAVDWWRVEDVEPGRRLTLRAEMKAGGRAWLQLSTEPREGGGSVYRQ RAVFMPDGLLGRAYWTAILPFHAVVFPEMAANILAEAQRRHDGGERPRTRGLLRPLVDRL PLRRNPLDRRARDADGAQSRD >gi|289556778|gb|ADCD01000084.1| GENE 15 11614 - 15045 2982 1143 aa, chain + ## HITS:1 COG:PA0799 KEGG:ns NR:ns ## COG: PA0799 COG0553 # Protein_GI_number: 15595996 # Func_class: K Transcription; L Replication, recombination and repair # Function: Superfamily II DNA/RNA helicases, SNF2 family # Organism: Pseudomonas aeruginosa # 551 1122 50 644 663 347 40.0 6e-95 MATADSGDVLPHLRTEAIRAVVGPTSADRGFAVAASGAVGRLRYDAATGRLSASVQGTAP SPYRVQVQLQEAYDDAAEDGAGALMEPVDGRCTCPVGTDCKHVAAALYQVVRLDADQALD DARRKLAEMVTTADALPAPAGRGHDDGGPAGLDAPAADGAAPPPPAGLDWRRVMEPLAGL DGPRRLGTPPALAIGVELVAESSRNAFQQWGPATAGEEQVREGRPLYVTVRPLKRGAKGT WIKGGLTWKAFQFPRAEFAPAQERAMRLIWRQVQAEDSYPGDAWFGLHVFDSPRIWQLLA EAREVGVELVPLGLLTDVVLEAPAAVGLDVTRAPDGGLDVAPALDPAPPVPGLSGVHAVG GIGFYRVELTDEEAVLHLIPAERPVPEAVQQLVLAGGPVRVPAADREEFLGRIYPRLRGA LPVTSGDASVELPEFEPPVLRLRADFRPDHELVLRWSWLYFDPPRELGLDAGGDPLRDTR HEDAVLRAVTELWPRAGRAEEQVLEGVGAARFSETVLPLLQRADHVRVDVTGDRPDYREL KAAPRIEVGTKATQNDWFDLGVQVSVDGHVLPFVELFTALVQGRTTLVLSDGSYLGLDHP AFDRLRALLSEAATLQEWTPEHTPVSRHQVGFWEDLKELADEVDEDPEWTAAVGRLAAVE RLPEAPRPAGLKADLRPYQEEGLRWLAFLWEQDLGGILADDMGLGKTVQTLALFAHARQA RPERPPFLVVAPSSVVSVWAAEAEKFTPDLDVRVLDTTTRKRGTAVADEVAGADVVVTSY TLLRIDAGQYGGLDWGGVVFDEAQFLKNRAAKVHTVARDLRAPFRLAITGTPMENSLSDL WALLGVVVPGLFPSHRRFRETYVTPIETGEDPERMAALRRRVRPFMLRRSKELVAKDLPP KQEQILQVELEPAHRKLYDRVLQRERRKVLGLLGDMDGNRFTIFKSLTLLRMLALAPQIV DDQYASVPSSKLERFLDDLTEVIGEGHRVIVFSQFTSFLRVIAEELDHLEIEHAYLDGST RGRAEVIRGFREGEAPVFLISLKAGGFGLTLTEADYVFLMDPWWNPAAEAQAVDRAHRIG QERTVMVYRLVSEGTIEEKVLELQRRKAELFGALMDESDDSGAGAFTDSLTAEDIRELLG AEE >gi|289556778|gb|ADCD01000084.1| GENE 16 13489 - 16413 1424 974 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MPGGDPLERLVDGVRAGGEGEADELGPVDGVEVVAGGQRDAGLLQKGGAVADGAAELRQH ARGEAGPQVEGAVGGGGVGPAEPGQGGQHDAARRREAAGLLGTERVGLLAERVDGRLLGR GGRAEGDRAGEAVDRGGEVVRQEHPAQPPAGHAPVLGERADHERRAGGAPCAGAGPLPVR VHDAVVDLVRDEPHTAFLAPAGELGELAGADHRARGIGRGGEHEPRDRALRERRLQVGDR GLVAGAGVDVHVHHLHPERREDVAVRRIAGAGQEHAVPRGERREEAEHERPRGARGDRDL LGAHVQPVPAAVVAGDGGPQLRQAQRRGVGEGTAGGVDGGGRGVDGGRGAPARLPRAQAD DVVAGGTQLGDPAEDAHHRERRHLRPGGRREGGGGGAGTGRATHGPRLPPAFVRETAPRG PLSLMKRAGRPPFHQRKRLDTRPFPERKRPARLARPSLLGAEQLPDVLGGEGVGEGTGAG VVGLVHERAEQLGLAPLQLEHLLLDRPLGHEPVDHHGPLLPDPVRPVHGLRLRGGVPPRI HEEHVVRLGQGQAEAARLQGDQEHRRLALTEAADHLGAPARGAVEVRVLDLQVVQLLGDH PQEARELAEHDHAVPLADHLGEVVEEPLELGAGYGGVLVVDDLRRQRQHPQQRERLEDGE PVAVHVPEQPQHLAALALEHAVVELAVGRLELHLEDLLLLGRQVLRHELLGAAQHEGAHA AAQGRHPLGVLPGLDGGHVGLAEPAVAREQARHDDAQQRPQVAEGVLHRRAGDGQSEGGA QVAGHRVHLRGAVLQELRLVEDHPAPVESAVLAGVDPQERVAGDHHVRPRHLVRHGGAAL AGGGVQDAHVEVRGELLGLGRPHGHHGARRDHEERRPLGPGLACVGEEREGLDGLAQAHV VGQDPAEVLLPQEREPAQALLLVGAQVGLQAGGARGLGEALDGGQTPDGGGPLRVLVHLV RELLEVLPEADLVP >gi|289556778|gb|ADCD01000084.1| GENE 17 16468 - 17763 961 431 aa, chain - ## HITS:1 COG:PA2324 KEGG:ns NR:ns ## COG: PA2324 COG1960 # Protein_GI_number: 15597520 # Func_class: I Lipid transport and metabolism # Function: Acyl-CoA dehydrogenases # Organism: Pseudomonas aeruginosa # 42 421 26 402 419 283 46.0 5e-76 MTTTTDRTDTISRPADVGTTDSGAPTTAHPADRPQFLAARARLAPVLAWLAETAAERDRE RVTDREATDRLAAAGFPGLRVPEEAGGAGLTFPEATRLYVELAEADSNVLQALRVHVVNV ETVLGSPDGPRRERWLHRFATGETVANATTEIGNRTGHYETRLTTRPDGSAVINGRKAYS TGTLYADWTIVVVEDEDGAERAATVRSDAPGVTLHDDWDGFGQRLSASGTTEFTDVVVDP EELTPVGQSLDDGSSIFASQAIFQFVHLVGLTGIARAVVRDAAAYVAGRTRGFSHGAAPR PGDDPQVLQVVGELEAAAFGAQAALDAVVGPLDRALRAEAAGAPLAEAEVDAVYTAVYAA QQVIARAALDAATRLFEVGGASATLRTRGLDRHWRNARVLASHNPLIYRARLLGDRAVKG TPLGRHYRLGG >gi|289556778|gb|ADCD01000084.1| GENE 18 17765 - 19132 984 455 aa, chain - ## HITS:1 COG:PA2324 KEGG:ns NR:ns ## COG: PA2324 COG1960 # Protein_GI_number: 15597520 # Func_class: I Lipid transport and metabolism # Function: Acyl-CoA dehydrogenases # Organism: Pseudomonas aeruginosa # 1 422 1 406 419 211 36.0 2e-54 MTTPVLDRPAPTSAADTPDTAELRARFAPVFARIAANEARRRDTAVAPHAAVRLLAETGF TALRLPRERGGSGATLTQLLDLLVDLAAADANLPQALHGHFMFTEQVARDVHPRLTDWWL DEVAAGKVFANALVDPPAATGLPGVTARRDPRDPEAFLLTGTKQYSTGTLLADWTLVAAH DDAGALQPLVVEVTGPGVEARDDWDGIGQRGTASGTTVYTDAPAPAWRRVDLERPAAAPG YPFLWLILAATQAGIAQRALDDFTEILRRRSRSYQHAASASPAHDPVLQHQLGAAAAQVR ALRSVVLGAVPALEAAYTAAAGAAPVLGAAATESPDDGAAEAFEAAHTEAWVAAASASSV AADLTLRLTSDLFETAGASAVVAGPGLDRHWRNARVLASHTPLPHRRRQIGECLLHGTPA PHSADAVETASSAGADPSRDSASPSPSTPAAPKEQ >gi|289556778|gb|ADCD01000084.1| GENE 19 19214 - 20788 946 524 aa, chain + ## HITS:1 COG:no KEGG:Mlut_21130 NR:ns ## KEGG: Mlut_21130 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 47 510 1 464 493 726 92.0 0 MPVPATGARRRRCRDDGQTPTAVLRTICNSLYCESVASSRSRERLPVSHSTPQRRSTRTA ACSATLAAAAIALTACGADAAPSGPTSAPASASGGSESPAGEARAASSVSEEDRVDPTQT TEVSAVTPRILLSHEGGLTLLDAESGEVVKEQDVPGFTRLSNAGNGKDVLVTTGNGWEVF STGIQAKAHGDHVHNYESAPGMTGVTFPGEHPGHVVTHNGRTTLFADGTGAIRTFDSAHL DKATPDLLPVMTEAETEDPHHGVALELSDGTLFTTQGTEDSRNTLQVIDPTTGEVTAETD DCPGSHGEAAAQPTEAGDVVVMGCENGPVVYRDGEFHKVDVETEYQRSGNLFGLHDSPIV LGDYKVEEEPKEAVERPTAIALIDTRTDALTTVDLGSSYWFRSLGRAEDGSAVVLTYDGE VNVIDEETGEVTAEHPVIEPWKEKDEWQEPGPILKVAGNTAYVTDAEAQKLVAVDLETGE TVLEKDLEFAPVEMAVVTGQPESAKPEAAADAESGHDEHAGHDH >gi|289556778|gb|ADCD01000084.1| GENE 20 20813 - 21226 358 137 aa, chain - ## HITS:1 COG:lin0680 KEGG:ns NR:ns ## COG: lin0680 COG3152 # Protein_GI_number: 16799755 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 1 109 1 120 140 62 30.0 3e-10 MTMLQAIRRYYAGYAQFSGRASRADFWLAALYVWLLQTAVRFVSTALDVFILGSPDLSLR DAAVLLVGIAHALPSLALLARRLHDAGFSRAWLFLGLVPFVGPLTLLVFALQPSAPRLGH PADASDPVPAGATAARR >gi|289556778|gb|ADCD01000084.1| GENE 21 21237 - 21869 447 210 aa, chain - ## HITS:1 COG:no KEGG:Mlut_20880 NR:ns ## KEGG: Mlut_20880 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 10 102 1 93 107 130 91.0 3e-29 MSHVMRGGTMTDTTTARPMRPTHHDDDPPVRGIGHLRHPVVSGGLIGVIGGGAFLFGGIA GLPAEHQGTLRGGAIALIGFTLVVVLLRRRVLPAVQAPARGALRVYGIAVVAMLALFPVT RLVALALDAPTAQIALVAAVVGGHFLPFARAFRAPVFWWIGGAMAVLGLAGAAFAALGMP AAGPAGAAAAGAAMLVIVAAQALLGSPRQD >gi|289556778|gb|ADCD01000084.1| GENE 22 22185 - 22697 884 170 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|239918553|ref|YP_002958111.1| acetyltransferase, ribosomal protein N-acetylase [Micrococcus luteus NCTC 2665] # 1 170 1 170 170 345 95 3e-94 MIPQPTDRLTFRCMTDADLDDMCRLLGDAEVMRYYPRAKSRNEVRRWINWSKDNYAKHGF GLWVIEHRSTGDFIGDCGLTWQNVDGQEVLEVGYHVLPERQGQGLATEGASACLRYGFET LDATMVTAIINPDNMASRRVAERIGMTVWKSTCDPRGAPIVVYSSHGQEA >gi|289556778|gb|ADCD01000084.1| GENE 23 22777 - 23190 307 137 aa, chain - ## HITS:1 COG:no KEGG:Mlut_20850 NR:ns ## KEGG: Mlut_20850 # Name: not_defined # Def: glyoxalase/bleomycin resistance protein/dioxygenase superfamily # Organism: M.luteus # Pathway: not_defined # 1 137 1 137 137 249 97.0 2e-65 MVTRPVLQQPVIDAVDIRSVAEFYRELLGLHYRAGDELADGREPDSADWLVLLDDDGRRV LTFQRTEELQPSTWPSPEVPMQLHLDFTVPDRDSLDAAHDHALRLGGRLVLDRSDDEDEP LYVFADPAGHPFCVFVG >gi|289556778|gb|ADCD01000084.1| GENE 24 23236 - 24375 927 379 aa, chain - ## HITS:1 COG:no KEGG:Mlut_20840 NR:ns ## KEGG: Mlut_20840 # Name: not_defined # Def: major facilitator superfamily transporter # Organism: M.luteus # Pathway: not_defined # 1 379 11 389 389 490 97.0 1e-137 MGVLMTLSGVGFLLLGVPIGIVVDRHLSPRLLAATGLAKAAVLGSLVVAWTLDALTFGHL AAVMALLGVLTVLAETTQTALVPRVVPAPAVARLTARLESADAALVLIVPAAAGLLVGSL GAGPVLGIATAFLFAAAIVALRVRLRPSAAADVPDDDGDPGVADVLSRWARFGKDAAEGW TVLRRTPVLWLLTMGSVAANVGMALFAPVEAVWILTDLRLGPEFLGVQITAGAVGALAAS SLAGRAIDRLGERRCILLGSVGCAVAVGLHLLAYADRAHAGPWLLAGAALWGFMVLLGNI TQAAVTARACPEGTLGRVTAMRRTLSRGSVPLATLAGGALGATLGVGWALAGWQVLAVVS LAAVVPAARWVDAGRDDVD >gi|289556778|gb|ADCD01000084.1| GENE 25 24558 - 25286 570 242 aa, chain - ## HITS:1 COG:no KEGG:Mlut_20830 NR:ns ## KEGG: Mlut_20830 # Name: not_defined # Def: ubiquinone/menaquinone biosynthesis methylase # Organism: M.luteus # Pathway: not_defined # 1 242 1 242 242 441 98.0 1e-122 MTQSTPGGPATDLPDFRPSGNQGVDPALYEIENAAMDREGALWAALQEAAPWTGRTLLDL GAGTGFWLPRYADAAETIAVEPDVRLLGAARARPGGTRVLYGSAEQIPLPEASVDVVHAR FAYFFPHPRWDVRPGLDEVTRVLRPGGALVVIDNDTERGQFAELLRASTNAAAQGQDTYA REWWAGIGAETREVMSSWTFDSRADLEAVLRLEFERGVADAWLAEHPAETSLSYGYLLHV WR >gi|289556778|gb|ADCD01000084.1| GENE 26 25583 - 26932 1088 449 aa, chain + ## HITS:1 COG:RSc1562 KEGG:ns NR:ns ## COG: RSc1562 COG2873 # Protein_GI_number: 17546281 # Func_class: E Amino acid transport and metabolism # Function: O-acetylhomoserine sulfhydrylase # Organism: Ralstonia solanacearum # 3 437 5 443 444 366 50.0 1e-101 MPRHATQQVHAGYEPAAPHRPVVPPIHQTTAFRFPDHATAASMFRLETPGFTYSRTGNPT VAVFENRLAALEGGIGAIATATGQAAVALSLLALLQGGKHLVASSQLYGGTVDLLTDTFA DFGIEVTFADPADPPAWAAAVRPDTRAFFLEAITNPLATLPDLPALADLAHAAGVPVVVD STLATPALYRPLEHGADVVVHSATKFLGGHGAVLGGAIVDGGTFDYGAAPDRWPQLARPK ARYGGQTLVERHGRGAYLTLARSKFLHDLGPTLAPASAAQFIQGLETLDLRVARHTATAL AVAEHLAGHPAVARVHHPGVAGHPSAALAARDFPDGVGSVFSFDLACGPEAVAPFLDALE LFQLVVNVGDARSLVSHPATMTHCRLTRQQREDAGIAETTVRLSIGLECPDDLIADLDRA LAVVSAAGPTVPAATPAVPETAAVTQEVR >gi|289556778|gb|ADCD01000084.1| GENE 27 26934 - 28244 1087 436 aa, chain + ## HITS:1 COG:Cgl2392 KEGG:ns NR:ns ## COG: Cgl2392 COG0626 # Protein_GI_number: 19553642 # Func_class: E Amino acid transport and metabolism # Function: Cystathionine beta-lyases/cystathionine gamma-synthases # Organism: Corynebacterium glutamicum # 14 398 5 383 386 398 54.0 1e-111 MTAVHHTTRSVSRPAVRGFTTTAVHAGQEPDPLTGAVVPPIYQTSTFVQDGINVLRAGHE YSRGSNPTRNGFETQLAALEHGDRAFAFASGLAAEDALLRAVLRPGDHIVLGGDGYGGTH RLITTVLEPWGVSNTPVDITDPTAVAAAVRPGRTALLWVETPSNPLLGIADLAAWAQIAH DAGALLVVDNTFASPYLQRPLDLGADVVVHSTTKYIGGHSDVLGGAVVVADREFRGRALA EAVAYQQFAAGAVAGPQDSYLAARGLKTLGLRMDRHGANAAALAGWLQGRPEVAQVFYPG LPDHPGHALAARQMDGFGGIVSIRLAGGEAAARAFAEATELFALSVSLGGVESLLCYSSE MTHASVRGTPLAVPTDLVRLSVGIEDVADLQADLEAGLECAARVAAGRGASSSSAVPRPA PAHHRTTRARTPERTR >gi|289556778|gb|ADCD01000084.1| GENE 28 28241 - 29287 968 348 aa, chain + ## HITS:1 COG:no KEGG:Mlut_20800 NR:ns ## KEGG: Mlut_20800 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 348 1 348 348 661 98.0 0 MSHATLVPSTAPTRVDDLTFSIHTTPFDEDYTPAASTRATTNFANLARGADRRENLCAAL AMIDGRLNDLAPWDNPERDRYTARIEIVSIDVHFTADDGADVDFPLMEMLDVRVVERATG AVLGRSVGNNFSSYVRDHDFSVVLPAHAATSPGTEEPDGFGDLHGRLFQHLLDSQAYRER FPQPPVICISVSTSRTYRRLTNEHPVLGVEYRQDEPSRTDRYFGRMGLGIRCFLPRGAVA PLAFYSRGDLLNDHANLSLAGLIATMETFQRIYRPEIYNANAGAGEVYRPRLDHGDFSQT RIAYDREERARLGREQGEYTQEHFVGPHRDLLERWAAAHAARDTEETR >gi|289556778|gb|ADCD01000084.1| GENE 29 29284 - 30315 896 343 aa, chain + ## HITS:1 COG:AGl2018 KEGG:ns NR:ns ## COG: AGl2018 COG0620 # Protein_GI_number: 15891128 # Func_class: E Amino acid transport and metabolism # Function: Methionine synthase II (cobalamin-independent) # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 1 340 1 340 342 518 74.0 1e-147 MTTLIPTTLVGSLPKPGWLAEEETLWSPWKLEGERLREGKLDALALAVADQERAGIDIVC DGEQTRQHFVTTFIEHLGGVDFDRRETVRIRDRYDASVPTVVGEVGRPAPVFVDDAKALR ARTDRPIKWTLPGPMTMIDTLADRHYGSREKLAWEFARILNEEARELAAVGVDVVQFDEP AFNVFFDDVRDWGVATLERAAEGLTCETAVHICYGYGIKANNDWKATLGEEWRQYETSFP LLRESTIDTIALERHHSRVPAELIGLLRGKKVMVGAIDVASDEIETPEEVAATLRETLEF VDADKLIASTNCGMAPLARSVARDKTAALVAGARILREELGGE >gi|289556778|gb|ADCD01000084.1| GENE 30 30331 - 30945 590 204 aa, chain - ## HITS:1 COG:RSc2024 KEGG:ns NR:ns ## COG: RSc2024 COG1279 # Protein_GI_number: 17546743 # Func_class: R General function prediction only # Function: Lysine efflux permease # Organism: Ralstonia solanacearum # 5 196 4 197 202 153 47.0 2e-37 MWTLAGTGLLTGLALIVAIGAQNAFVLRQGVRREHVGAVVLVCMASDAVLILAGTAGVGA LVQAVPWLLEVLRWGGALYLLWFAASSLRAALRPQGLVAEQAPRTAGSVIATTLALTWLN PHVYLDTVVLLGSLANQHGPDARWVFAAGAVAASVLWFTALGYGARLLARVLADPKAWRV VDVVIAVVMAVLAVRLIAGSDVWG >gi|289556778|gb|ADCD01000084.1| GENE 31 31017 - 31892 619 291 aa, chain + ## HITS:1 COG:MT2039 KEGG:ns NR:ns ## COG: MT2039 COG0583 # Protein_GI_number: 15841463 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Mycobacterium tuberculosis CDC1551 # 5 284 10 289 303 185 42.0 1e-46 MNLDQLQALRAIADEGSFEAAAYELGVSASAVSQRIRTLEREVGQVLLRRGTPCEPTEAG VGLVRVARHMRVLEQEAWAGLGRTAAGRSVTSLAVPADVLGTWFGPVLAEAADWDDTVLD LHVEDQDHSARLLRRGEVLAAVTTEPQPVQGCAAESLGSMRYVPLVAPALLARHAAGDVV DLGAMPMMRYNAKDDLQRLALSGAGLDVAPPTHLAPSFDGFHRSVRAGLGWGMLVNAQAV EDVRAGRLVRVPGLDDVLVPLYWQAATLPVTRLVWFTPPVREAAQRTLERG >gi|289556778|gb|ADCD01000084.1| GENE 32 31916 - 32986 824 356 aa, chain - ## HITS:1 COG:Cgl1902 KEGG:ns NR:ns ## COG: Cgl1902 COG0454 # Protein_GI_number: 19553152 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Corynebacterium glutamicum # 176 337 166 327 341 67 32.0 4e-11 MPDIIEFPLPASSDDPHWRAYCQLGDEYNHELIGTTEWDETPTDALIQATAETDHTLRRY LAYVDGEAVGYARVLVNHVDDPDAAALNVYVHPRHRGRGHGRALAERLVLDTAGLTRFET WPLTPRPVAGQRALTPPNGAGAVPAEHPGVRLAQSYGFALVQIERVSRYDFADPGIDPAV ALAEAERASSGYELHAWEGAADTSLQDDLAVLKARMATDMPSGERTVVEQVWDAARVRRM DEQILTTGRLFRAVARYRATGRIVALSELVAPRSRPDGLIDQWDTIVLPEHRGHRLGMRV KAANLIAVREALPEARAIITWNAEENRHMLDVNEALGFRPVLAEASMEAPAPLRRR >gi|289556778|gb|ADCD01000084.1| GENE 33 33686 - 34990 682 434 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289706493|ref|ZP_06502847.1| ## NR: gi|289706493|ref|ZP_06502847.1| hypothetical protein HMPREF0569_1137 [Micrococcus luteus SK58] # 1 434 32 465 465 791 100.0 0 MLTFEGPIGPVPADRAFPRTWSLEGCSSEHVHEWADLPRLRELRLRYAHPEHLAQLAGFR VEDLDMFHGTGLPAGSVWPELPTVVRAHWALMPVVALQGLNAPALEEVMVDGVHECLALE DLLASSPVKDLQVYDVRQVPLPQAVWDAAAGIEQVNWGGDLKANLWLMELAVGPVSRLPA GVRTPERRLMKRGLGVRNASMDAATWTAGDAGSDAVRAVLPAPSAEVADLLQRMGVADPG VFWGGLLSVRWPCLPEAGVRIALEDGATVVRGPRVEVEDTVALLAWWCSSPEVLASVVDV MVTAGLAGEAFAGGAPAVVPISRLVTGTSVASIEKLEERTYVLTMPMQPVPVTQMLESRG LEHSGHTWDQILELGFPAEVRRVELDPEADVFMAYGTRPALKKVQVVLDRLTQDADELVA CLERIKASGDAIDC >gi|289556778|gb|ADCD01000084.1| GENE 34 35123 - 35389 122 88 aa, chain - ## HITS:1 COG:Cgl0882 KEGG:ns NR:ns ## COG: Cgl0882 COG0640 # Protein_GI_number: 19552132 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Corynebacterium glutamicum # 42 85 1 44 119 79 88.0 1e-15 MDGGDLTRIQRRHTHATTIHLCRYQQREPHTRGQQVLYGQRMLTIASRLDVMNRLGRAMA DPTRSRILMTLLEGPSYPAVLARDLGRV >gi|289556778|gb|ADCD01000084.1| GENE 35 35345 - 35719 214 124 aa, chain + ## HITS:1 COG:DRA0071 KEGG:ns NR:ns ## COG: DRA0071 COG0640 # Protein_GI_number: 15807739 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Deinococcus radiodurans # 7 119 13 124 125 97 50.0 4e-21 MSVTPLDSCQVTAVHPEKVALTRERIPDEREAGRLAGLFKLLGDPRRARVLYALLEAGEL CVCDLAASVDVAEASVSQVLRVLRTAGVVENRREGRMVYYRLADGHVRMLLDVSREHARH EGQG >gi|289556778|gb|ADCD01000084.1| GENE 36 35719 - 36630 555 303 aa, chain + ## HITS:1 COG:lin2720 KEGG:ns NR:ns ## COG: lin2720 COG1230 # Protein_GI_number: 16801781 # Func_class: P Inorganic ion transport and metabolism # Function: Co/Zn/Cd efflux system component # Organism: Listeria innocua # 19 299 21 301 303 177 34.0 3e-44 MGAGHSHAPATGHAGGRYRRRLAGAFALTAGFFLIELVAGLVSGSLALLSDAGHMAADVV VLGAALLATRIASRPDSTGRRTYGSYRAEVFASALAVLAMLAVGVYVVVEAISRLGDAPE VASGAMLAVGFAGLVINIISMLLLRSGAKDSLNVKGAYYEVIADAAGSVGVMVAGVLIIL TGQPIWDVVVAALIAVFVIIRAVVLGRQVIAVLGQHAPEGVDPEDVAGDLDAVEGVEEVH DLHLWTLTSGMNVATAHLVADQGADHGAVLAGARRVLRDRYGIAHATLQVEGAGSDGCHD LSW >gi|289556778|gb|ADCD01000084.1| GENE 37 36819 - 37043 73 74 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGADQPYLLAPLRIGPATTGEFSRCKNSRPRPISGRLHDLYVLDPTRTALDDAMTALRRR HEAAVRLGRVTAPP >gi|289556778|gb|ADCD01000084.1| GENE 38 37107 - 37328 152 73 aa, chain - ## HITS:1 COG:Ta1341 KEGG:ns NR:ns ## COG: Ta1341 COG1249 # Protein_GI_number: 16082328 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes # Organism: Thermoplasma acidophilum # 1 71 397 467 469 59 42.0 1e-09 MVTDADTGRIIGITALAQDAGDLAAAGVYMLEAGMTTSQVANLWSPYLTMAEGLKLTAQA FTTDIAKLSCCAA Prediction of potential genes in microbial genomes Time: Thu May 26 08:04:39 2011 Seq name: gi|289556757|gb|ADCD01000085.1| Micrococcus luteus SK58 ctg1119142780301, whole genome shotgun sequence Length of sequence - 22057 bp Number of predicted genes - 18, with homology - 17 Number of transcription units - 10, operones - 4 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 9/0.000 - CDS 143 - 1288 1188 ## COG0372 Citrate synthase 2 1 Op 2 7/0.000 - CDS 1345 - 2283 937 ## COG2513 PEP phosphonomutase and related enzymes 3 1 Op 3 . - CDS 2283 - 3809 1551 ## COG2079 Uncharacterized protein involved in propionate catabolism 4 1 Op 4 . - CDS 3806 - 4495 575 ## COG1802 Transcriptional regulators + Prom 4638 - 4697 2.2 5 2 Tu 1 . + CDS 4725 - 6665 1499 ## COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases 6 3 Op 1 9/0.000 - CDS 6673 - 7389 221 ## PROTEIN SUPPORTED gi|149011191|ref|ZP_01832496.1| 30S ribosomal protein S9 7 3 Op 2 . - CDS 7386 - 9008 1160 ## COG3290 Signal transduction histidine kinase regulating citrate/malate metabolism 8 3 Op 3 . - CDS 9082 - 12867 1314 ## gi|115380387|ref|ZP_01467384.1| hypothetical protein STIAU_6592 9 3 Op 4 . - CDS 12570 - 16103 923 ## RMDY18_13940 predicted dithiol-disulfide isomerase involved in polyketide biosynthesis 10 4 Op 1 . + CDS 14050 - 14781 222 ## PROTEIN SUPPORTED gi|15639271|ref|NP_218720.1| bifunctional cytidylate kinase/ribosomal protein S1 11 4 Op 2 . + CDS 14778 - 16316 1355 ## COG1160 Predicted GTPases 12 5 Tu 1 . + CDS 16421 - 16900 400 ## Mlut_14030 hypothetical protein + Term 17110 - 17154 8.7 + TRNA 17279 - 17355 85.1 # Pro GGG 0 0 13 6 Tu 1 . + CDS 17679 - 17975 98 ## 14 7 Tu 1 . + CDS 18332 - 18631 225 ## PFREUD_11160 hypothetical protein 15 8 Tu 1 . + CDS 19108 - 19740 191 ## PFREUD_11160 hypothetical protein 16 9 Op 1 . + CDS 19875 - 20282 298 ## Caci_7308 hypothetical protein 17 9 Op 2 . + CDS 20279 - 21280 773 ## nfa50060 hypothetical protein + Term 21478 - 21518 12.7 18 10 Tu 1 . - CDS 21526 - 22047 317 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins Predicted protein(s) >gi|289556757|gb|ADCD01000085.1| GENE 1 143 - 1288 1188 381 aa, chain - ## HITS:1 COG:MT1163 KEGG:ns NR:ns ## COG: MT1163 COG0372 # Protein_GI_number: 15840569 # Func_class: C Energy production and conversion # Function: Citrate synthase # Organism: Mycobacterium tuberculosis CDC1551 # 5 380 27 391 393 425 60.0 1e-119 MTETEIKKGLAGVVVDTTAISKVNPETNSLLYRGYPVQDLAAQLPFEAVALLLWTGELPT DEELAAFERFERAHRALDPKVKQAIDLLPTDCHPMDVGRTAVSVLGANHPKAEDSSPEAE LEKAQALFAAFPAVVAYDQRRRRGQDVVEPRENLDYSQNFLWMTFGEEAAPEVVDAFRVS MVLYAEHSFNASTFTARVITSTLSDLHSAVTGAIGALKGPLHGGANEAVMHTFDEIGIRK EESREDAAARAKAWMEDALAQKKKVMGFGHRVYKNGDSRVPTMKAALDRMIEHYGREELL GLYDGLQQAMDEAKQIKPNLDYPAGPTYHLMGFDTELFTPIFIASRITGWTAHIMEQRAA NALIRPLSAYDGPEQRELPAG >gi|289556757|gb|ADCD01000085.1| GENE 2 1345 - 2283 937 312 aa, chain - ## HITS:1 COG:Cgl0675 KEGG:ns NR:ns ## COG: Cgl0675 COG2513 # Protein_GI_number: 19551925 # Func_class: G Carbohydrate transport and metabolism # Function: PEP phosphonomutase and related enzymes # Organism: Corynebacterium glutamicum # 10 298 12 298 305 311 57.0 8e-85 MLYSTKTAEQKRIDLRQTLKQGGAQQFPGAFTPLSAKLIQEKGFPGVYISGGVLANELGL PDVGLTTLTEVAVRGGQIARLTDLPCLIDADTGFGEPMNVTRTVQEFENAGLAGCHIEDQ FNPKRCGHLDGKNMVDLDTAVKRIAAAVDARRDPNFLIMARTDLRAVEGLDAAIARMKAL VEAGADAIFPEALKDIGEFETVCRELEPLGVPVLANMTEFGKSELFTRRQLADAGVAMVI YPVTLLRSAMGAAERVLDAIKEEGTQQSQVEQMLTRARLYELVDYEGYNAFDTGIFNFDV PTLDIGANHADL >gi|289556757|gb|ADCD01000085.1| GENE 3 2283 - 3809 1551 508 aa, chain - ## HITS:1 COG:Cgl0674 KEGG:ns NR:ns ## COG: Cgl0674 COG2079 # Protein_GI_number: 19551924 # Func_class: R General function prediction only # Function: Uncharacterized protein involved in propionate catabolism # Organism: Corynebacterium glutamicum # 1 473 1 470 498 630 68.0 1e-180 MKNHHVRVHRSEENLERKDQLAWKLAEVAVDDVEVLPEVEEMIINRIIDNASVAVASLRR GPIVAARAQALSHPVSTGGAGASVFGVEQKVSPEWAAWANGVAVRELDYHDTFLAAEYSH PGDNIPPILAVAQHAGRSGKDLIRGIATGYEIQVDLVKSINLYGHKIDHVAHIGPSASAG IGTLLGLDTETIFQAIGQGLHTTTATRQSRKGEISTWKAHAPAFAGKMAVEAVDRAMRGQ TSPVPIYEGEDGVIAWLLDGPDASYEVPLPEQGEPKRGILDTYTKEHSAEYQAQAWIDLA RKLHKEHPEATDPANVESVLIKTSHHTHYVIGSGANDPQKYDPTASRETLDHSIPYIFTV ALQDGSWHHVDSYAPERAQREDTVALWHRVTTVEDPEWTRRYHSLDLAEKAFGGAVEITL KDGTVITDEIAVADAHPLGARPFAREQYIQKFRTLAEGIVSKEEQDRFLAAAERVAELQP GELDQLNILADPAFLSEADLVAAPKGLF >gi|289556757|gb|ADCD01000085.1| GENE 4 3806 - 4495 575 229 aa, chain - ## HITS:1 COG:Cgl0642 KEGG:ns NR:ns ## COG: Cgl0642 COG1802 # Protein_GI_number: 19551892 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Corynebacterium glutamicum # 2 203 13 216 240 97 34.0 2e-20 MRASERAYQALRAEILDWSLPPGAGLGEVEQAERLGISRTPLREALSRLVADGLAEQAPG RGIVVADLSLEQADQLFDLRIALESLLARRAAQRATPEAAERFTVLAGRFQEAETALRGG TDPADYYAMTAELDSRLDEAAANPYLVSTLRTLRLHLARLRRLAADDPARLAASAAEHAD IADAVGSGAADLAEATTRVHLHHAFHHLTRRGRAEETPTLLTPTEGDRP >gi|289556757|gb|ADCD01000085.1| GENE 5 4725 - 6665 1499 646 aa, chain + ## HITS:1 COG:mll5286 KEGG:ns NR:ns ## COG: mll5286 COG0365 # Protein_GI_number: 13474409 # Func_class: I Lipid transport and metabolism # Function: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases # Organism: Mesorhizobium loti # 22 643 23 636 642 678 55.0 0 MPPPKTAPPARTPTPTPAPPRPRGVWLDAARAIDWTVAPTRALDDSAAPLYRWFPDGELN TAFNCLDRHVEAGRGDAVALIHDSAMTGEVTRYTYAELTDAVARLAGALAARGVGRGDRV LVYLPMIPQAHIAMLACARLGAVHSVVFGGFAPRELASRIDDAAPDVVLTCSGGIEPKRR VEYLPAVAEALETAAHPVRTVLVHHREGFETALADADGRGGASWEDWGEAVAAAEPADCV PVQATDPLYVLYTSGTTGKPKGVVRDNGGHAVALRWTMEHIYDVGPGQVMCTASDVGWVV GHSYIVYGPLLAGATTVMYEGKPVGTPDAGAFWRLIEDHGVRSFFTAPTALRAIRRADPE GELLKAHDLSSLRHFFAAGERLDPETQRWIEGLLGMPVIDHWWQTETGWAIAANPVGLEQ LPVKIGSSSVPSPGVDLVVLDGLGEPVPAGTEGNIALRLPLPPGTLPTLWRDDQRYIDSY LSAFPGHYATGDSGVVDEDGYVFVLGRTDDVINVSGHRLSTGVLEAALASHPAVAECAVI GVADPLKGQRPSGYVVLKSGVETPEPGSEAEAALLDELRQAVRREVGPVADFRDVVVVEA LPKTRSGKILRKTMRQMADGEEYAVPSTIEDPAVLEALAGVLRPAR >gi|289556757|gb|ADCD01000085.1| GENE 6 6673 - 7389 221 238 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149011191|ref|ZP_01832496.1| 30S ribosomal protein S9 [Streptococcus pneumoniae SP19-BS75] # 8 235 3 224 226 89 28 1e-17 MTARPYRVLVVEDEQLTAETYVAHLDRLPGFEVAAVAGSLLAARQVAAAGLHADGRFPFD VVLLDMNLPDGHGLDFLHQLRAAGFHGGVLALTAATDLPVVRRAVAYGVTQYLVKPFGFD EFADRLGGFRAASAMLAGDGALDGQEQVDAVFRVSRERRAEALPKGLTEGTLREVMDLLG ADPETALSAAEVGERLGISRVTARRYLEHLERIRRVRRSARHGGRGRPEQEYRWAGRA >gi|289556757|gb|ADCD01000085.1| GENE 7 7386 - 9008 1160 540 aa, chain - ## HITS:1 COG:BH3839 KEGG:ns NR:ns ## COG: BH3839 COG3290 # Protein_GI_number: 15616401 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase regulating citrate/malate metabolism # Organism: Bacillus halodurans # 8 532 12 532 538 148 27.0 2e-35 MRHPWSIARRIAVVHVALVAAIALFSVWSAYLQAREVALRVEERHVQGVTTLVARDPALV SALRVGDAPALQAGIDGWIAEAQVSWLTVMDPDGMRLASWRPEQVGVRYPRPVDAVVAGD TVVELSSTGAAGRSVRALAPVVDPEDGTVLGVVTMGVQISDVTIMAEAQIPGILLGSAAV AAVGLLVAWLVGRYLNRVTLGRGPEQIAEQFLLAETAMASLEAGVVVLAPDGRVRLHNDA AARLLGWEGEGEPRPPTELSAALPGAVGGEASLAVGGRVLVVQQRVVRAPGRSDPGGSVP PTALAAAAREGVTTAPAGSRVLVLHDRTDLQRLGDELTVAHTLTTALRAQTHEHANQLHT ALALVGSGRLEAARAVLSRRAADEEASDDVLAALLDAKAAQARERGVALTWSAELTAPAP LRPLDLLTVLGNLVDNALDAAAAPDLSAADRWVDVEVVSDDAGLLVQVADGGPGPSDADR GRLFDRGWSTKPVGAAGRGMGLWLTRRIAEEAGGVADVATDSGTVFTVEVPRDPRAQEET >gi|289556757|gb|ADCD01000085.1| GENE 8 9082 - 12867 1314 1261 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|115380387|ref|ZP_01467384.1| ## NR: gi|115380387|ref|ZP_01467384.1| hypothetical protein STIAU_6592 [Stigmatella aurantiaca DW4/3-1] # 53 232 487 666 680 88 38.0 4e-15 MAQLLRVERADGALLLVAQQDGAHLDADEPLDRVADLLEHAAHDAVLPRVQHDLDEHVAR RRVDELERVHLRHAVLQLHALAQPVRDALGQRAAGLHHVGLGDLVAGVGEAVGQLTVVGE DEQALGLVVQTAHVEQVLLPGLEVGGDRGPALRVHHRGDHAAGLVEDEVLLGHVRLHGDA VHPDHGRGRVHAHAGLGDDDAVHLHAALGDEVLAHAPGRHTRRGQHLLQALARLVVDAVE VGGLGPGGSGAAAAATARARHGVLVEGGLLAGAGGAAAGTDLSLVVALLERAAPSTDGGG ASGASRLAGVHGEGVLSGARQRRRSGRRRTGQGVGDGPETDTPGSILADRRRLVSRPPLP RPRARREPARSRDGTGPASSALSGRSRRAAAGDQLAGELPVGLGAVVVLGEQGDGRGRHR GVGELDGPLDDGLEHAVPEAGHQRAHDLLGVQGSLVEHRGQHAVDLQVRVEPVLHLLDRL DEQGDRAQREELGGQRDDHAVGGGQRVDGQQAQRGLAVDEDHVVVVADLAQRALEDLLAG HLVDELHLGRGQVDVGRQQVHVLEVRGQDRVLRGHRPLHEHVVHRGVELVRVRTQAGREG ALRVEVHHEHPAAVARERGAQVDGGGRLPDAALLVHHRDDPRRAVRGQGRGLGEVVLGPA GGPEHGLAVDGHHGDRFSRGHGGAGSFHGGLHARPRAAARRGAVVGVSGSSPTLVPGVPG TTATPGTGLCPGSSPASPVVDDATCRAGPPPPSADGVPVAVGGHREVQAGVGVTLVGLLG DRRGLLRVVRGAVVADHGRLVELQLAAQDAPGALAVEFAHPAADEERGHGVAGEVGQGAG LGHELVDAHDHAHAAEQLGSVRLQAGGERGHARAGDAGRALRGDDHEDQQADLLAEVHLR AHRVGDEERGHGQVDGGAVQVEGVASGHGHAHDGLVHAGVLHLGDQAGQGGLGGAGGEDE QVLPAQVLHEGQDAQAGHDLQDGAEHHHDEGDAGQVEGAHEQRHGADRGPARGADDGGDR TEGADRGDPHHHHEDAEHDALDQGETTQQRGAGRAHLLQGEAHEQGDEQGGQHRQGAGDD VQQELDGAVHRGLGLVRVVGRELEALAGVDEVADDEADGQRERGHRHEVDQGDAAHAADG RGLGDRADAEGDRAEDDRADHHLDEGDEAVAQRLEGLAELGEEQADGGAQHHRGDHGDVQ PVGAVLLRRRGRRGRGLGRWGVRHRAFRSVRWWRAAERSAAAREGCDHSRGPGWCRSRLR S >gi|289556757|gb|ADCD01000085.1| GENE 9 12570 - 16103 923 1177 aa, chain - ## HITS:1 COG:no KEGG:RMDY18_13940 NR:ns ## KEGG: RMDY18_13940 # Name: not_defined # Def: predicted dithiol-disulfide isomerase involved in polyketide biosynthesis # Organism: R.mucilaginosa # Pathway: not_defined # 1 484 3 493 495 243 37.0 2e-62 MGRHELAEERVELARGDAGVPRVQGEVQRGDETVLVPAGLRGDVHARRPGDVRQVPVDLL GQLEPAVLIHLVPLVERDHEGTPGVQHHLEDAHILLRDHLRRLEQHHGHLGAVQGGGRAQ RRVVVGAVGHVLPSTDAGGVHEAPQASAELHELVHGVARGAGQVVHHHAVRAGQLVQQRG LAHVRPAHEGDPARAAARHETAVGGLLRQRLEGGVQQVRDAAAVHRGHRVRVAEAERPQG GGVGLLDHVVHLVGGHDHRAVLAAQHRDHGLVRGRHADGGVHHEHDGVRHVHGQLGLLGH ATMDALGVVLPAAGVHHGELAAVPLGVVGDAVARHAGHVLHHGLTAADDAVDERGLADVR PAHDGQHGRHGRVDVLVGPELPRVEEGGVVLLELVVGQAGAQRCGTRLGLLLGHGGEPLG HLIVAGGDELVLTGAVLGVLGHRRPPFTAGMPAWSSTAARTAATVCSKSSSVESTSATPS AGRSNVDTVASRASRPATWRCSVPASTPVSPAAASWPERRAVRTASEAVSSTRAWASGAT TVVMSRPSATIRPAAAIAARWRRCSSSRTGMTTATVETVSVTSGPRIASVTSVPPTRTAS TSGSVDWSRSMATAAAATASASARSTPSCRQCHATARYMAPVSRYAAPRRRATALDTDDL PEPEGPSTATTSGAGATSSRVCSVISDHLPSGGGQRRHEFVPAAGQHGDLHHADPVARGV LEPQVLHVHVRAADLVEEGRDLPGGVVHDHRDHRERLRRRPVLAGHPCPTGVALGDQLRH VQPRPGGGGVLQGADQPVQVRPQPVQRRHDPPGVAGEDLHPQLRVRRRDPGGVPQPVAGQ GERLVRGVLQAGGHERGGDLRQVRDQRDRFVVGAGGHPVRGGLQRQRKRPTGREGARARR VRRAQHPRRLREQGAAGRHRTGPLGAGHRVRPEVPVGVLRGQAGLVDGGAHARGDRLLHR GDVHHHGRGPAAQRVHHDVGGHVRRRGHDNEARGGIEVVALGVQAGGASGADVRGHGQGG GRGVVQAHVQTGRAQPDADRGAQQTGPPDEDGLRDPGRAVTERGGGLGGRAHRPTRALRW PSSCALSARTVPCFWSPSRMGPTLTRTSRSTGWPISWNMRRTMRFFPECSTTSTSTWPGV ESTSLNESTCATPSSSSTPSRSRFETPLASGPRVCTT >gi|289556757|gb|ADCD01000085.1| GENE 10 14050 - 14781 222 243 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15639271|ref|NP_218720.1| bifunctional cytidylate kinase/ribosomal protein S1 [Treponema pallidum subsp. pallidum str. Nichols] # 14 243 35 293 863 90 33 1e-17 MTEHTRDDVAPAPLVVAVDGPSGSGKSSVSKAVARRLGAAYLDTGAMYRAVAWHCLHEGV DLADAEAVAAAAVAMDLDQSTDPDVEAVRVGGTDVTEAIRGPEVTDTVSTVAVVIPVREE LHRRQRAAIAAAGRMVAEGRDITTVVAPDAHARVLLTASEAVRTARRSGQLAAAGETGVD AGTLHRQVAGRDARDATVSTFDRPADGVALVDSTELDFEQTVAAVLAAVEDQAGIPAVKG GRR >gi|289556757|gb|ADCD01000085.1| GENE 11 14778 - 16316 1355 512 aa, chain + ## HITS:1 COG:MT1753 KEGG:ns NR:ns ## COG: MT1753 COG1160 # Protein_GI_number: 15841173 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Mycobacterium tuberculosis CDC1551 # 61 512 13 463 463 521 65.0 1e-147 MTENPQHRSGEDEFVPAGDDQVAERLAAMTEEEAEARAASLRAGLADYELEEDDAALLDA WQLGPDEDVDAPVPPVLAIVGRPNVGKSTLVNRIIGRREAVVEDVPGVTRDRVSYDAEWN GREFTVVDTGGWEHDAKGIHRRVAEQAELAVDVADAVVFVVDATVGMTATDEAVVSMLRR KDRPVIVAANKVDDMVQEADAATLWSLGFGYPYPVSAVHGRGVADLLDAALEALPEESAH GGLVPRGGPRRIALVGRPNVGKSSLLNKLAGSDRVVVDDLAGTTRDPVDELVELGGRLWR FVDTAGIRRRQHMAHGADYYASLRTASALDRAEVAVVLLEAPQVVSEQDVRILQMVLDSG RALVIAFNKWDQVDEDRRLQLAKEIDRDLAHVAWAPRVNISAKTGWHKDRLVPALDLALD SWDTRIPTGKLNAFLGELVAAHPHPLRGGKQPRILFATQVSSRPPKFVLFTTGFLDPGYR RFIVRRLRETFGFEGTPLEIGMRVREKRGRRR >gi|289556757|gb|ADCD01000085.1| GENE 12 16421 - 16900 400 159 aa, chain + ## HITS:1 COG:no KEGG:Mlut_14030 NR:ns ## KEGG: Mlut_14030 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 159 1 159 159 187 94.0 7e-47 MSLIRRRPAALSLATLAALALAASGCAVDDGETRAALQSAEDRLAQAEDRISELEADASD RVDLGQLRQEAEGALEEADQRAAEVVEDLTRSLPSGSDIVDIEALREDGKVVIEYGRSAL EADPQVLEDTMREAAEQARNAIPNLEDVEFRVGDRTFTF >gi|289556757|gb|ADCD01000085.1| GENE 13 17679 - 17975 98 98 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MADAAGSPASLAVRLERPPVPLDRARQPRRPSAWPPVPHVRVCEVATTAPIVSDGTRTAD PQHHCFRRRRVAAFGPCLYGKMGAVTVCSGPSVHPTLS >gi|289556757|gb|ADCD01000085.1| GENE 14 18332 - 18631 225 99 aa, chain + ## HITS:1 COG:no KEGG:PFREUD_11160 NR:ns ## KEGG: PFREUD_11160 # Name: not_defined # Def: hypothetical protein # Organism: P.freudenreichii # Pathway: not_defined # 2 95 9 102 499 119 70.0 4e-26 MAELDITRAPRGVLAAQALVASVAERGDLAERHYLELKSTLDLSTKKDKEKIAKFILGAA NRMPDVAATAFEGYGVMIIGVAQGAITGIPAVEMMRSRR >gi|289556757|gb|ADCD01000085.1| GENE 15 19108 - 19740 191 210 aa, chain + ## HITS:1 COG:no KEGG:PFREUD_11160 NR:ns ## KEGG: PFREUD_11160 # Name: not_defined # Def: hypothetical protein # Organism: P.freudenreichii # Pathway: not_defined # 3 205 291 499 499 159 40.0 5e-38 MEPEQRSEEEYLKSIDHWESRFREAWTAALPKIEASQLRPAIVRITNRTPTFFHDVEVKL HLEGDVFAHDYSKPEWAVDFSDLELPHPPREWGPTQRSLSIPNYANMNQLYTPGATQYIP PSISYKNGGSVDLSLNVGELRPRGTYESEDEEIVLVVADRSLVSIRGTWELTARDHNEVF TGEIDVPVAPARDVTKAARDVLGLKKDAGA >gi|289556757|gb|ADCD01000085.1| GENE 16 19875 - 20282 298 135 aa, chain + ## HITS:1 COG:no KEGG:Caci_7308 NR:ns ## KEGG: Caci_7308 # Name: not_defined # Def: hypothetical protein # Organism: C.acidiphila # Pathway: not_defined # 1 115 46 166 288 68 41.0 5e-11 MFKIGSLQHGTGVYQYSDADYLVSLKGIQPSSPLTMLTKVKEALQARFTSTTITIGQPAV DCHFSDGIVEVVPGYIASGGGDLIVDPRGGWMKSFPEEHNKYVNEINAKHSGGSSSGRVS RASQLFVVRPRGILR >gi|289556757|gb|ADCD01000085.1| GENE 17 20279 - 21280 773 333 aa, chain + ## HITS:1 COG:no KEGG:nfa50060 NR:ns ## KEGG: nfa50060 # Name: not_defined # Def: hypothetical protein # Organism: N.farcinica # Pathway: not_defined # 157 329 1 173 175 203 56.0 7e-51 MSAPYVSIKRLVDNSLAAMLAAVEVYNKPQMTYRDEVTVMLVVNAWELALKATLRQKNRS IFYPKKRGERYRSIAIDDALGRVTASKLWPADIDGPAVVANVKALTEYRDRAIHLYNAQG LGAVIYPFLQQNILNYRDFMVAKFKKDLADSMTWQLLPLGATAPADAVQFMKVDKNATMV AEVEDFITELRHLMDDAQAAGGDMGRVATVYDIHMQSQKKMSSADLVVAVSPTADGQIAI RKTDPNQTHPFSATKLLEKVNEKRTGRKLTSRDHQALCWQDQLRENPKYAWKHTIGASHS WSGETVSYMVSLTDEQYDNARRGYSASLRRAAK >gi|289556757|gb|ADCD01000085.1| GENE 18 21526 - 22047 317 173 aa, chain - ## HITS:1 COG:AGc4069 KEGG:ns NR:ns ## COG: AGc4069 COG0503 # Protein_GI_number: 15889512 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 3 169 22 187 198 134 44.0 1e-31 MSVTSEIARARSLIRVVPDHPSPGVAFQDITPLLADARALRACVEALVAPFEGRFDLVAG LEARGFLLAGAAAALTGTGLVPLRKAGRLPAPAARADYTLEYGTASIEVSEDLRAGSRVL LLDDVLATGGTLAAGRRLIEARGAEVVGAACLLELTALGGRAVVPDTHVLFAA Prediction of potential genes in microbial genomes Time: Thu May 26 08:06:12 2011 Seq name: gi|289556751|gb|ADCD01000086.1| Micrococcus luteus SK58 ctg1119142780291, whole genome shotgun sequence Length of sequence - 8475 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 4, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 236 - 2161 1315 ## COG1404 Subtilisin-like serine proteases + Term 2362 - 2395 6.8 + TRNA 2280 - 2356 92.9 # Val CAC 0 0 + Prom 2282 - 2341 79.3 2 2 Tu 1 . + CDS 2519 - 4429 1624 ## COG2966 Uncharacterized conserved protein 3 3 Tu 1 . - CDS 4443 - 6524 703 ## COG0692 Uracil DNA glycosylase 4 4 Tu 1 . + CDS 6811 - 8442 1593 ## PROTEIN SUPPORTED gi|167855908|ref|ZP_02478658.1| 50S ribosomal protein L28 Predicted protein(s) >gi|289556751|gb|ADCD01000086.1| GENE 1 236 - 2161 1315 641 aa, chain + ## HITS:1 COG:RSc2654 KEGG:ns NR:ns ## COG: RSc2654 COG1404 # Protein_GI_number: 17547373 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Subtilisin-like serine proteases # Organism: Ralstonia solanacearum # 97 484 76 527 679 191 39.0 4e-48 MQSSTPRSTRRRIGALVAGAVLAGGTLTSSPALAAPSGAAPAAPAASPTVASPLAAAQVE DPNADGYDSFIVTYKETAANAHAKGRANAWGKAAKEAGVSVKELRETALGSRVITADRKL DQAESAKFMADLKASGAVEAVEPDAILTATGLSPVDALYSQQWGFTGTHGMRVPGAWDRT TGSGATVAVIDTGITSHPDLDRNVVPGYDFISDSAAARDGGGRDSNPRDEGDWYAAGECG TAGASDSSWHGTHVAGTVAAVADSQGVVGVAPNAKIQPIRVLGKCGGSLSDIADAVVWAA GGTVAGVPANPNPADVINMSLGGSGMCGTTYQNAINAAVSRGVPVVVAAGNENQPAANVR PANCQNTIVVAASTSQGARASFSNYGSAVDVTAPGANIISTVNNGATTPTTAGHAAYNGT SMATPHVAGLAALLLAAQPSLTPAQVESTLRSTARSMPVTCSAGCGAGLADASAAVSSLG GAQTEPGPAPVASLIVNGGFESGSTGWTGTPTGFVRTDAAKAASGQAFAQLNGVGRRNTA TVEQKVTVPASGATLTYALQVDTAETTASRSYDLLDVQVVTGATGTYTVASHSNLDKGGY ATRTVDLSRFAGTTVTLRFRGTEDSSAATTFRIDEVAVTAR >gi|289556751|gb|ADCD01000086.1| GENE 2 2519 - 4429 1624 636 aa, chain + ## HITS:1 COG:Rv3737_1 KEGG:ns NR:ns ## COG: Rv3737_1 COG2966 # Protein_GI_number: 15610873 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Mycobacterium tuberculosis H37Rv # 193 458 21 287 292 113 30.0 1e-24 MEQEGTQEPARFDPRIAEPPAVPTLIPVLRPAGAEDAAAAGDLDPEDPGLLDLDPAESAH PAAVAVEPTEPLPPVVRPAAADPAPAPEPEPEESAEPEAETLPEPTADAPLTEPPLSEQV PTSVLAPAEADGALPAPDVIPAPDITVPDPVVPVGPPEKRGRRRGRRSREVFVENLPTQA LVLADRLHSSPYGRRMRSTLQQRRAEAQALEARTTLDFALKLGETMFSFGAASLDVETSI IVATQAYGILETEVDLTNQSISLNYAPDSSRGEAPFTLQRVVRSSSVNFEGLVAVHRLVE EIAAGEVDRAEAQRRLVEIRHQPKPFPAVFEVLFSGVFVACFVPFIGGTWTGAALGMVST WLVFWLKVQADKARFPEIFSTMFGAITATVIALMAYALDLPVNPALVIAGGIMMLLPTAR FVTAVQDAIHGFPVTAAGRFLSALLVFAGVMAGIMIAVGIGDLVGFEQLDLAEAGTLSYP PLLLLGLVVAAGMADAVVEQSRWPQILACGLVSGAGFGAYLAAQQIGVSDRLVPAVAAAA VGFLGRLVAQRLAAPALVIVLPSMLFLLPGLTMFRSVYGFTVETGATLLGVEGLFNAAVI VVAIAAGVAFGNTLAKPITDRMGTLLPTELVMHQRG >gi|289556751|gb|ADCD01000086.1| GENE 3 4443 - 6524 703 693 aa, chain - ## HITS:1 COG:ML1675 KEGG:ns NR:ns ## COG: ML1675 COG0692 # Protein_GI_number: 15827886 # Func_class: L Replication, recombination and repair # Function: Uracil DNA glycosylase # Organism: Mycobacterium leprae # 475 692 10 227 227 246 59.0 8e-65 MRGRHGRATGGSAGDDHRDAVHLQVRGLHDREAELLADRLGGGLVGRAVVQDGGGLDAVA APVLRLHRGVAGTREPLRVGGGESLGAGRVVHGDVGAAHGRGLRGRTGARRSRGLCGCTR ARRGRRLCGRTGARRGRGLRARGLRRGGGTGRLGGRTGRGGARGLRRLGGRRPRRLGGLR GGFGTRGLRRLCLGGGTGRLGGLGGGRLLRRPRGLGRGRGAGRLRRVLGRGGGLGRGCSR RRRGGRRGGHGRGRRRRRGSRGRRRALGGDGRGAVAGEPRQDDAHEQAGEQDEAGHPEQR AQAATPARGGRAGGGEGLAVRAALVRVLGDLVEAVGLVGHGSVLLAGSGRGRRRIRGSPP GPAAGAAPAQQPRDQQGSVGQGGLTVQQSVQHLIIGGRRQPQTLADGVVLGPAVPPGGGL QVQDRTLQVRQLVPPRPRAGTLVRGRIGRDGRGVGHGGHCTHPVYPRGMEFIAPLDPGWE AALAPQAAAFEQVGERLRARRAAGEQVLPAPEHILRAFRQPFADVRVLVLGQDPYPTPGH PIGLSFAVDRHVRPLPRSLANIHRELHDDLGITPPAHGDLSAWTDQGVLLLNRALSVRAG APGSHRGLGWEQITEAAVRALCARGTPLVGLLWGADARRMAPLLTAAGAGVVESPHPSPL SAHRGFFGSRPFSRVNRLLEAAGADPVDWRLPD >gi|289556751|gb|ADCD01000086.1| GENE 4 6811 - 8442 1593 543 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167855908|ref|ZP_02478658.1| 50S ribosomal protein L28 [Haemophilus parasuis 29755] # 2 543 3 547 547 618 60 1e-177 MAKTIAFDEEARRGLEKGLNTLADAVKVTLGPRGRNVVLEKKWGAPTITNDGVSIAKEIE LEDPYEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVREGLRNVAAGADPLSLKRGIE KAVEAVTSELLSASREIETKDQIAATASISAADKQIGSLIAEALDKVGKEGVITVEESNT FGLELELTEGMRFDKGYISGYFVTDADRQEAVLEDPYILIVNSKISSVKDMVAILEKVMQ SGKPLLIIAEDVEGEALATLVVNKIRGTFKSVAVKAPGFGDRRKAMLADIAILTGGQVIS SEVGLSLENATLDLLGTARKVVITKDETTIVEGAGDAEQIAGRVAQIRSEIENTDSDYDR EKLQERLAKLAGGVAVIKAGAATEVELKERKHRIEDAVRNAKAAVEEGIVAGGGVALIQA GAKAFGGLQLEGDEATGANIVKVAIEAPLKQIAFNAGLEPGVVADRVKTLDDGHGLNAAT GEYEDLLAAGINDPVKVTRSALQNAASIAGLFLTTEAVVADKPEKAAAGAEGMDPMGGMG GMM Prediction of potential genes in microbial genomes Time: Thu May 26 08:06:13 2011 Seq name: gi|289556749|gb|ADCD01000087.1| Micrococcus luteus SK58 ctg1119142780160, whole genome shotgun sequence Length of sequence - 307 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 57 - 306 161 ## Mlut_18800 molecular chaperone GrpE (heat shock protein) Predicted protein(s) >gi|289556749|gb|ADCD01000087.1| GENE 1 57 - 306 161 83 aa, chain + ## HITS:1 COG:no KEGG:Mlut_18800 NR:ns ## KEGG: Mlut_18800 # Name: not_defined # Def: molecular chaperone GrpE (heat shock protein) # Organism: M.luteus # Pathway: not_defined # 1 83 1 87 220 106 95.0 3e-22 MSADQQRPHGSSDAERGSEEEPIVFNDRRRIDPETGEPRVSAESAAEQAEDGDALAQAER ILDEAGAEAPQPAASDREAELET Prediction of potential genes in microbial genomes Time: Thu May 26 08:08:26 2011 Seq name: gi|289556663|gb|ADCD01000088.1| Micrococcus luteus SK58 ctg1119142780346, whole genome shotgun sequence Length of sequence - 71803 bp Number of predicted genes - 82, with homology - 80 Number of transcription units - 29, operones - 15 average op.length - 4.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 217 - 1407 1356 ## PROTEIN SUPPORTED gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 2 1 Op 2 . + CDS 1672 - 2139 339 ## Mlut_17180 hypothetical protein + Term 2153 - 2201 21.0 3 2 Op 1 40/0.000 + CDS 2466 - 2774 522 ## PROTEIN SUPPORTED gi|239918200|ref|YP_002957758.1| SSU ribosomal protein S10P 4 2 Op 2 58/0.000 + CDS 2795 - 3445 1105 ## PROTEIN SUPPORTED gi|239918199|ref|YP_002957757.1| LSU ribosomal protein L3P 5 2 Op 3 61/0.000 + CDS 3450 - 4085 1049 ## PROTEIN SUPPORTED gi|239918198|ref|YP_002957756.1| LSU ribosomal protein L4P 6 2 Op 4 61/0.000 + CDS 4082 - 4387 507 ## PROTEIN SUPPORTED gi|239918197|ref|YP_002957755.1| LSU ribosomal protein L23P 7 2 Op 5 60/0.000 + CDS 4425 - 5264 1471 ## PROTEIN SUPPORTED gi|239918196|ref|YP_002957754.1| LSU ribosomal protein L2P 8 2 Op 6 59/0.000 + CDS 5280 - 5561 490 ## PROTEIN SUPPORTED gi|239918195|ref|YP_002957753.1| SSU ribosomal protein S19P 9 2 Op 7 61/0.000 + CDS 5613 - 5978 599 ## PROTEIN SUPPORTED gi|239918194|ref|YP_002957752.1| LSU ribosomal protein L22P 10 2 Op 8 50/0.000 + CDS 5981 - 6799 1386 ## PROTEIN SUPPORTED gi|239918193|ref|YP_002957751.1| SSU ribosomal protein S3P 11 2 Op 9 50/0.000 + CDS 6799 - 7215 726 ## PROTEIN SUPPORTED gi|239918192|ref|YP_002957750.1| LSU ribosomal protein L16P 12 2 Op 10 . + CDS 7220 - 7489 424 ## PROTEIN SUPPORTED gi|239918191|ref|YP_002957749.1| LSU ribosomal protein L29P - Term 7261 - 7310 -0.1 13 3 Tu 1 . - CDS 7399 - 8484 278 ## RMDY18_04900 coenzyme F420-reducing hydrogenase, beta subunit 14 4 Tu 1 . + CDS 7486 - 7767 456 ## PROTEIN SUPPORTED gi|239918190|ref|YP_002957748.1| SSU ribosomal protein S17P + Term 7803 - 7842 12.8 15 5 Op 1 . + CDS 8110 - 8478 603 ## PROTEIN SUPPORTED gi|239918189|ref|YP_002957747.1| LSU ribosomal protein L14P 16 5 Op 2 48/0.000 + CDS 8483 - 8824 567 ## PROTEIN SUPPORTED gi|239918188|ref|YP_002957746.1| LSU ribosomal protein L24P 17 5 Op 3 4/0.000 + CDS 8824 - 9399 974 ## PROTEIN SUPPORTED gi|239918187|ref|YP_002957745.1| LSU ribosomal protein L5P 18 5 Op 4 55/0.000 + CDS 9473 - 9871 665 ## PROTEIN SUPPORTED gi|239918186|ref|YP_002957744.1| SSU ribosomal protein S8P 19 5 Op 5 46/0.000 + CDS 9902 - 10435 902 ## PROTEIN SUPPORTED gi|239918185|ref|YP_002957743.1| LSU ribosomal protein L6P 20 5 Op 6 56/0.000 + CDS 10435 - 10809 606 ## PROTEIN SUPPORTED gi|239918184|ref|YP_002957742.1| LSU ribosomal protein L18P 21 5 Op 7 . + CDS 10806 - 11555 1247 ## PROTEIN SUPPORTED gi|239918183|ref|YP_002957741.1| SSU ribosomal protein S5P 22 5 Op 8 . + CDS 11559 - 11783 363 ## PROTEIN SUPPORTED gi|239918182|ref|YP_002957740.1| LSU ribosomal protein L30P - Term 11508 - 11541 3.6 23 6 Tu 1 . - CDS 11770 - 14427 1138 ## 24 7 Tu 1 . + CDS 11776 - 12228 751 ## PROTEIN SUPPORTED gi|239918181|ref|YP_002957739.1| LSU ribosomal protein L15P 25 8 Op 1 9/0.000 + CDS 14426 - 15217 700 ## COG0024 Methionine aminopeptidase + Term 15227 - 15288 6.3 26 8 Op 2 2/0.000 + CDS 15404 - 15643 309 ## PROTEIN SUPPORTED gi|15610598|ref|NP_217979.1| translation initiation factor IF-1 27 8 Op 3 . + CDS 15679 - 15792 193 ## PROTEIN SUPPORTED gi|239918176|ref|YP_002957734.1| LSU ribosomal protein L36P 28 9 Op 1 48/0.000 + CDS 16067 - 16435 601 ## PROTEIN SUPPORTED gi|239918175|ref|YP_002957733.1| SSU ribosomal protein S13P 29 9 Op 2 32/0.000 + CDS 16519 - 16923 674 ## PROTEIN SUPPORTED gi|239918174|ref|YP_002957732.1| SSU ribosomal protein S11P 30 9 Op 3 50/0.000 + CDS 17026 - 18054 1014 ## COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD subunit 31 9 Op 4 4/0.000 + CDS 18129 - 18857 1212 ## PROTEIN SUPPORTED gi|239918172|ref|YP_002957730.1| LSU ribosomal protein L17P 32 9 Op 5 7/0.000 + CDS 18971 - 19864 621 ## COG0101 Pseudouridylate synthase 33 9 Op 6 59/0.000 + CDS 19935 - 20585 758 ## PROTEIN SUPPORTED gi|239918170|ref|YP_002957728.1| LSU ribosomal protein L13P 34 9 Op 7 . + CDS 20627 - 21115 810 ## PROTEIN SUPPORTED gi|239918169|ref|YP_002957727.1| SSU ribosomal protein S9P - Term 21381 - 21439 1.2 35 10 Tu 1 . - CDS 21537 - 21758 128 ## gi|289706564|ref|ZP_06502914.1| hypothetical protein HMPREF0569_2242 36 11 Tu 1 . + CDS 21669 - 22043 157 ## COG2326 Uncharacterized conserved protein 37 12 Tu 1 . - CDS 21899 - 22699 608 ## Mlut_16840 hypothetical protein 38 13 Op 1 . + CDS 22862 - 24217 1174 ## COG1109 Phosphomannomutase 39 13 Op 2 . + CDS 24226 - 24453 126 ## Mlut_16820 hypothetical protein + Term 24647 - 24700 1.0 - Term 24478 - 24525 19.4 40 14 Op 1 . - CDS 24548 - 24970 435 ## COG1970 Large-conductance mechanosensitive channel 41 14 Op 2 . - CDS 25030 - 25773 434 ## COG1876 D-alanyl-D-alanine carboxypeptidase 42 14 Op 3 . - CDS 25777 - 26796 832 ## COG1072 Panthothenate kinase 43 15 Op 1 . + CDS 26862 - 27917 794 ## COG1087 UDP-glucose 4-epimerase + Term 27926 - 27967 -0.9 44 15 Op 2 . + CDS 27968 - 29839 1848 ## COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains + Term 29856 - 29907 19.2 45 16 Op 1 . + CDS 30010 - 31305 1184 ## COG1680 Beta-lactamase class C and other penicillin binding proteins 46 16 Op 2 . + CDS 31404 - 33119 1441 ## COG1523 Type II secretory pathway, pullulanase PulA and related glycosidases 47 16 Op 3 . + CDS 33067 - 33534 413 ## COG1523 Type II secretory pathway, pullulanase PulA and related glycosidases 48 16 Op 4 . + CDS 33531 - 34262 595 ## Mlut_16750 hypothetical protein 49 16 Op 5 1/0.000 + CDS 34259 - 34639 225 ## COG0736 Phosphopantetheinyl transferase (holo-ACP synthase) 50 16 Op 6 1/0.000 + CDS 34636 - 36213 439 ## PROTEIN SUPPORTED gi|90022317|ref|YP_528144.1| ribosomal protein S15 51 16 Op 7 3/0.000 + CDS 36210 - 37415 973 ## COG0787 Alanine racemase 52 16 Op 8 12/0.000 + CDS 37412 - 38038 488 ## COG0802 Predicted ATPase or kinase 53 16 Op 9 20/0.000 + CDS 38049 - 38720 294 ## PROTEIN SUPPORTED gi|15827107|ref|NP_301370.1| putative acetyltransferase 54 16 Op 10 9/0.000 + CDS 38717 - 39304 288 ## PROTEIN SUPPORTED gi|227982014|ref|ZP_04029271.1| (SSU ribosomal protein S18P)-alanine acetyltransferase 55 16 Op 11 . + CDS 39331 - 40422 679 ## PROTEIN SUPPORTED gi|229232313|ref|ZP_04356740.1| (SSU ribosomal protein S18P)-alanine acetyltransferase 56 16 Op 12 . + CDS 40473 - 41003 449 ## Mlut_16670 hypothetical protein - Term 40798 - 40851 3.3 57 17 Op 1 . - CDS 41012 - 42043 767 ## COG0053 Predicted Co/Zn/Cd cation transporters 58 17 Op 2 . - CDS 42040 - 42543 337 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 59 17 Op 3 . - CDS 42540 - 43496 634 ## Mlut_16640 nucleoside-diphosphate-sugar epimerase 60 17 Op 4 . - CDS 43568 - 44743 918 ## COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases 61 17 Op 5 . - CDS 44826 - 47183 1434 ## COG2170 Uncharacterized conserved protein 62 18 Tu 1 . + CDS 46917 - 47423 330 ## Mlut_16610 hypothetical protein 63 19 Op 1 6/0.000 + CDS 47594 - 48658 902 ## COG4607 ABC-type enterochelin transport system, periplasmic component + Term 48805 - 48847 4.0 64 19 Op 2 11/0.000 + CDS 48880 - 49713 742 ## COG4606 ABC-type enterochelin transport system, permease component 65 19 Op 3 10/0.000 + CDS 49706 - 50794 934 ## COG4605 ABC-type enterochelin transport system, permease component 66 19 Op 4 . + CDS 50791 - 51546 262 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 67 20 Tu 1 . - CDS 51827 - 52804 453 ## Mlut_16560 hypothetical protein 68 21 Op 1 41/0.000 + CDS 53434 - 53730 328 ## COG0234 Co-chaperonin GroES (HSP10) 69 21 Op 2 . + CDS 53839 - 55446 1491 ## PROTEIN SUPPORTED gi|167855908|ref|ZP_02478658.1| 50S ribosomal protein L28 70 22 Tu 1 . + CDS 55619 - 55876 116 ## Mlut_16530 choline/carnitine/betaine transport + Term 56028 - 56060 -0.1 71 23 Tu 1 . - CDS 55825 - 56106 93 ## 72 24 Op 1 . + CDS 56087 - 56983 711 ## COG1292 Choline-glycine betaine transporter 73 24 Op 2 . + CDS 57039 - 60149 1930 ## COG0516 IMP dehydrogenase/GMP reductase + Term 60264 - 60302 1.3 74 25 Tu 1 . - CDS 58467 - 62318 1773 ## RMDY18_05370 hypothetical protein 75 26 Op 1 . + CDS 62390 - 62938 525 ## Mlut_16480 hypothetical protein 76 26 Op 2 1/0.000 + CDS 63012 - 64580 1438 ## COG0519 GMP synthase, PP-ATPase domain/subunit 77 26 Op 3 . + CDS 64679 - 68443 2853 ## COG1112 Superfamily I DNA and RNA helicases and helicase subunits 78 26 Op 4 . + CDS 68433 - 68672 116 ## Mlut_16450 hypothetical protein 79 27 Tu 1 . - CDS 68693 - 68953 236 ## COG2331 Uncharacterized protein conserved in bacteria 80 28 Op 1 . + CDS 68952 - 70391 1089 ## PROTEIN SUPPORTED gi|239918126|ref|YP_002957684.1| acetyltransferase, ribosomal protein N-acetylase 81 28 Op 2 . + CDS 70469 - 71389 699 ## Mlut_16410 hypothetical protein 82 29 Tu 1 . + CDS 71541 - 71802 163 ## Mlut_16400 putative homoserine kinase type II (protein kinase fold) Predicted protein(s) >gi|289556663|gb|ADCD01000088.1| GENE 1 217 - 1407 1356 396 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 [marine gamma proteobacterium HTCC2080] # 1 394 1 405 407 526 65 1e-149 MAKAKFERTKPHVNIGTIGHVDHGKTTLTAAISKVLYDKYPDLNEARDFATIDSAPEERQ RGITINISHVEYQTEKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMAQTRE HVLLARQVGVPALLVALNKSDMVEDEELLELVEMEVRELLSSQEFDGDDAPVIRTSGLKA LEGDPQWVKSVEDLMDAVDEFIPDPVRDKDKPFLMPIEDVFTITGRGTVVTGRAERGTLK INSEVEIVGIRDVQKTTVTGIEMFHKQLDEAWAGENCGLLLRGLKRDDVERGQVVVAPGS ITPHTNFEANVYILSKDEGGRHNPFYSNYRPQFYFRTTDVTGVITLPEGTEMVMPGDTTE MSVELIQPIAMEEGLGFAIREGGRTVGSGRVTKITK >gi|289556663|gb|ADCD01000088.1| GENE 2 1672 - 2139 339 155 aa, chain + ## HITS:1 COG:no KEGG:Mlut_17180 NR:ns ## KEGG: Mlut_17180 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 3 155 1 153 153 229 97.0 2e-59 MSLPSPRRLFAVTAMAEMFTWAGLLIAMGLKYGGVTERVVPVAGGVHGFVFLCYLVVTVA VWIDGRWSVTRGLLGLGSTIVPFMTVPFERAQRRRGEPAPRWQVVDRAPGERRPLERLLV VVLRHPVVSALVAVAVVAVVFTLLLNAGPPTEWGR >gi|289556663|gb|ADCD01000088.1| GENE 3 2466 - 2774 522 102 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239918200|ref|YP_002957758.1| SSU ribosomal protein S10P [Micrococcus luteus NCTC 2665] # 1 102 1 102 102 205 100 5e-52 MAGQKIRIRLKSYDHEVIDVSARKIVDTVTRAGATVVGPVPLPTEKNVYCVIRSPHKYKD SREHFEMRTHKRLIDIIDPTPKAVDSLMRLDLPADVNIEIKL >gi|289556663|gb|ADCD01000088.1| GENE 4 2795 - 3445 1105 216 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239918199|ref|YP_002957757.1| LSU ribosomal protein L3P [Micrococcus luteus NCTC 2665] # 1 216 1 216 216 430 99 1e-119 MTNTQNIKGLLGTKLGMTQVWDEDNKLIPVTVVKADPNVVTQLRSEETDGYTAVQIAYGQ IDPRRVTKPLAGHFEKAGVTPRRHLVELRTADAAEYELGQDVTVEVFEAGQKVDVVGTTK GKGFAGAMKRHGFAGVGASHGAHKNHRKPGSVGGASTPGRVFKGQRMPGRMGAVRQTTMN LTLHGIDVENNLLLIKGAVPGSKGQVVLVRSAVKGA >gi|289556663|gb|ADCD01000088.1| GENE 5 3450 - 4085 1049 211 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239918198|ref|YP_002957756.1| LSU ribosomal protein L4P [Micrococcus luteus NCTC 2665] # 1 211 1 211 211 408 99 1e-113 MAENSVKTIQVDLPVELFDVQSNVPLMHQVVVAQLAAARQGTHKTKRRGEVSGAGRKPFK QKGTGRARQGSIRAPHMTGGGVVHGPTPRDYSQRTPKKMKAAALRGALSDRARNGRVHVI EALVSGTTPSTKAAKAGLASLNTGRKNVLLVIDRADDVAALSARNLPAVHTLYADQLNTY DVLVSDDVVFTQAAYEAYVAQASGAKKEDAQ >gi|289556663|gb|ADCD01000088.1| GENE 6 4082 - 4387 507 101 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239918197|ref|YP_002957755.1| LSU ribosomal protein L23P [Micrococcus luteus NCTC 2665] # 1 101 1 101 101 199 99 3e-50 MSGSINKDPRDVIIAPVVSEKSYGLIDEGKYTFLVDPRSNKSEIKQAVERIFNVDVASVN TLNRSGKRRRTRFGWGQRKSTKRAIVTLKDGTIDIFGGPLA >gi|289556663|gb|ADCD01000088.1| GENE 7 4425 - 5264 1471 279 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239918196|ref|YP_002957754.1| LSU ribosomal protein L2P [Micrococcus luteus NCTC 2665] # 1 279 1 279 279 571 99 1e-162 MAIRKYKPTTPGLRGSSVADFAEITRSTPEKSLLRPLHKTGGRNNTGRITTRHKGGGHKR QYRLVDFRRHDKDGVPATVAHIEYDPNRTARIALLHYADGAKRYILAPAKLKQGDVVEAG PNADIKPGNNLPLRNIPVGTTIHAVELRPGGGAKMARSAGASVQLVAREGKYAQLRLPSG EIRNVDVRCRATIGEVGNAEQSNINWGKAGRMRWKGVRPTVRGVVMNPVDHPHGGGEGKT SGGRHPVNRNGKPEGRTRRPNKESDKLIVRRRRTGKNKR >gi|289556663|gb|ADCD01000088.1| GENE 8 5280 - 5561 490 93 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239918195|ref|YP_002957753.1| SSU ribosomal protein S19P [Micrococcus luteus NCTC 2665] # 1 93 1 93 93 193 98 2e-48 MPRSLKKGPFVDQHLYLKVLAENEKGSKNVIKTWSRRSMIIPDMLGHTIAVHDGRKHVPV FVTESMVGHKLGEFAPTRTYRGHVKDDKKGKRR >gi|289556663|gb|ADCD01000088.1| GENE 9 5613 - 5978 599 121 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239918194|ref|YP_002957752.1| LSU ribosomal protein L22P [Micrococcus luteus NCTC 2665] # 1 121 1 121 121 235 100 6e-61 MEAKAIARHLRVTPMKARRVVDLVRGKQATEALAILKFAQQGASEPVYKLVTSAVANARV KADREGQAFDEDALYITEAFVDEGPTMKRFQPRAQGRAYRINKRTSHVTVVVASKDEKGG N >gi|289556663|gb|ADCD01000088.1| GENE 10 5981 - 6799 1386 272 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239918193|ref|YP_002957751.1| SSU ribosomal protein S3P [Micrococcus luteus NCTC 2665] # 1 272 1 272 272 538 100 1e-152 MGQKINPNGFRLGITTDHVSHWFADSHKEGQRYADFLKEDVKIRELMTTGMERAGISKVE IERTRDRVRVDIHTARPGIVIGRRGAEADRIRGELEKLTGKQIQLNILEVKNPETDAQLV AQGVAEQLASRVAFRRAMKKAIQSAMRAGAQGIRIQCSGRLGGAEMSRSEFYREGRVPLH TLRANIDFGKFEAKTTFGRIGVKVWIYKGDLTAKELAAKEAAQPSGRGRGGERRGGGERR RRNDRAERAPRQENAGAGAETPAAAPAEGGNA >gi|289556663|gb|ADCD01000088.1| GENE 11 6799 - 7215 726 138 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239918192|ref|YP_002957750.1| LSU ribosomal protein L16P [Micrococcus luteus NCTC 2665] # 1 138 1 138 138 284 100 1e-75 MLIPRRVKHRKQHHPKRSGAAKGGTTVTFGEWGIQALTPAYVTNRQIEAARIAMTRYIKR GGKVWINIYPDRPITKKPAETRMGSGKGSPEWWVANVKPGRVLFELSGVTEDVAREALRL AIHKLPLKARIIRREGGE >gi|289556663|gb|ADCD01000088.1| GENE 12 7220 - 7489 424 89 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239918191|ref|YP_002957749.1| LSU ribosomal protein L29P [Micrococcus luteus NCTC 2665] # 1 89 1 89 89 167 98 1e-40 MAIGTKDLNVESLDGMDNARLLEALKSSKEELFNLRFQAATGQLDNASRLKSVKRDIARI YTILRERELGIRGDVAAEAQAEKNEEAAK >gi|289556663|gb|ADCD01000088.1| GENE 13 7399 - 8484 278 361 aa, chain - ## HITS:1 COG:no KEGG:RMDY18_04900 NR:ns ## KEGG: RMDY18_04900 # Name: not_defined # Def: coenzyme F420-reducing hydrogenase, beta subunit # Organism: R.mucilaginosa # Pathway: not_defined # 4 131 69 197 244 141 62.0 5e-32 MRSDHLRGERHDLHELLVTQLATHGAEDARATGLAVGLQDDRRVLVELDVRAVGTAGLLA GADHHGLDDVALLDVAAGDGVLHGGDDGVADACVAASGTAENTDGQDFLRTGVVGDLEPR LLLDHLSLLASRRFSPTMGEPCGTVERASRDAYPSPEAGRPPSSPGDACSDSVGEVESGG ARRAGPRRIRDRCARPSAHRMDGPANERAHEYQSLTHKAAPCQCTGRPSASPTLRGPGRS LGALDDLHQAPPLGGGQRAGLGDADAVAHAGGVVLVVRLHALRGLHHLAVERVLLAVLDL DDDGLVHLVGHDDATEGLAVAALLGDGRGLLGHLAASSFFSACASAATSPRMPSSRSRRI V >gi|289556663|gb|ADCD01000088.1| GENE 14 7486 - 7767 456 93 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239918190|ref|YP_002957748.1| SSU ribosomal protein S17P [Micrococcus luteus NCTC 2665] # 1 93 1 93 93 180 97 2e-44 MTEQTPAVSEERGYRKALRGIVVSDKMDKTIVVEVQDRKKHSLYGKVMKTSKRVKAHDED NTAGVGDRVRIAETRPLSASKRWRLVEVVERAK >gi|289556663|gb|ADCD01000088.1| GENE 15 8110 - 8478 603 122 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239918189|ref|YP_002957747.1| LSU ribosomal protein L14P [Micrococcus luteus NCTC 2665] # 1 122 1 122 122 236 99 2e-61 MIQQESRLKVADNTGAKEILTIRVLGGSGRRYAGIGDTIVATVKDAIPGGNVKKGDVVKA VVVRTRKQSRRPDGSYIKFDENAAVILKTDGEPRGTRIFGPVGRELRDKKFMKIVSLAPE VI >gi|289556663|gb|ADCD01000088.1| GENE 16 8483 - 8824 567 113 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239918188|ref|YP_002957746.1| LSU ribosomal protein L24P [Micrococcus luteus NCTC 2665] # 1 113 1 113 113 223 100 3e-57 MAKIKKDDLVQVISGKDKGKQGKVLRVFPTDERVLVEGVNRVTKHLRAGQDNNGSTEGGL QVVEAPIHISNVAVVDPETKKPTRVGYRFETVEKDGVSKTVKVRFAKASGKEL >gi|289556663|gb|ADCD01000088.1| GENE 17 8824 - 9399 974 191 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239918187|ref|YP_002957745.1| LSU ribosomal protein L5P [Micrococcus luteus NCTC 2665] # 1 191 1 191 191 379 100 1e-104 MTEVQQTEKVTPRLKTKYREEIRGALQEQFQYGNVMQVPGLVKVVVNMGVGEAAKDSKII DGAVTDLTAITGQKPMITKARKSIAQFKLREGMPIGTHATLRGDRMWEFLDRLVTLALPR IRDFRGLSDRQFDGNGNYTFGLSEQTVFHEIDQDKIDRVRGMDITVVTTAKNDDEGRALL KALGFPFKTDQ >gi|289556663|gb|ADCD01000088.1| GENE 18 9473 - 9871 665 132 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239918186|ref|YP_002957744.1| SSU ribosomal protein S8P [Micrococcus luteus NCTC 2665] # 1 132 1 132 132 260 100 1e-68 MTMTDPVADMLTRLRNANSAYHDTVSMPSSKLKTRVAEILKAEGYIQDWREEEAEVGKKL TIDLKFGPQRERAIAGLRRISKPGLRVYAKSTNLPHVLGGLGIAILSTSSGLLTNQQAAK KGVGGEVLAYVW >gi|289556663|gb|ADCD01000088.1| GENE 19 9902 - 10435 902 177 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239918185|ref|YP_002957743.1| LSU ribosomal protein L6P [Micrococcus luteus NCTC 2665] # 1 177 1 177 177 352 100 4e-96 MSRIGRLPITIPAGVDVTIDGDRVSVKGPKGQLEHSLPTPITATLEEGQVTVARPDDERE SRSLHGLTRTLISNMVEGVTNGFSKQLEVVGTGYRVQAKGQDLEFALGYSHPVPVKAPQG ITFTVEGNRVTVAGIDKQQVGETAANIRKLRRPDPYKGKGVRYAGEQIRRKAGKAGK >gi|289556663|gb|ADCD01000088.1| GENE 20 10435 - 10809 606 124 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239918184|ref|YP_002957742.1| LSU ribosomal protein L18P [Micrococcus luteus NCTC 2665] # 1 124 1 124 124 238 98 9e-62 MSTLKVKGKGKFNARTRRHLRVRKRISGTTVRPRLVVNRSARHMFVQVVDDTQSRTLAYA STMEADVRALEGDKTAKAKRVGELVAERAKAAGIEAVVFDRGGNKYHGRVAAVADGAREG GLQL >gi|289556663|gb|ADCD01000088.1| GENE 21 10806 - 11555 1247 249 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239918183|ref|YP_002957741.1| SSU ribosomal protein S5P [Micrococcus luteus NCTC 2665] # 1 249 1 249 249 484 99 1e-136 MTENINQKDTQVTESTETTVSETGSGSASQTTERATGGRGGRDGGRGGRDGDRRGGRRDD RNRRGAQDDEKDQFLERVVGINRVSKVVKGGRRFSFTALVVVGDGDGTVGVGYGKAKEVP AAIQKAVEEAKKSFFRVPRVGSTIPHLVQGEDAAGVVLLRPASPGTGVIAGGPVRAVLEC AGIHDVLSKSMGSVNAINIVRGTVDALKKLEEPQAVAARRGKALDEIAPHAMLRTMENDR AQKSAKAGA >gi|289556663|gb|ADCD01000088.1| GENE 22 11559 - 11783 363 74 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239918182|ref|YP_002957740.1| LSU ribosomal protein L30P [Micrococcus luteus NCTC 2665] # 1 74 1 74 74 144 97 1e-33 MFEPTRKNIQPSDATLVITQTRGVTGSKQNHRDTLRSLGLKRIGHQVTRKADAVTVGMVN TVPHLVSVEEVNNG >gi|289556663|gb|ADCD01000088.1| GENE 23 11770 - 14427 1138 885 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MACSWGAVLSSSERRPITGSGLRTRLDHGQGARGGAHGVHGLQQALGDVVDLAGAVHAGD DAALHVLLDDGLGLAVVQVQAVLDDLLGVVRATLDLGTLEQALHELLVGHLQFDDGGQRQ ARLGEHGVQRLDLALRARVAVQQEAVLRVGLGDAVRDHAVRDLIGDEVAVVDVLLGLDAE RRHRLHVVAEDVTGGDRDDPELVGDPGGLGALAGTGRAHEQHAGHRVFLTVDTDGVAGSG RGSAQQALVVALLHLCADLLHGLEADAHHDEDGRAAEREVLAGADHREGDQRDHGHDTEV EGADERDAADDVLQVTLGGPAGADAGDEPAVALHVVRDLHRVERDGHVEVREADDEQEVQ GHVHRVVAGAEVPAQPRDPRGRRTAVLRRVEPDEDAREHQHGGGEDDRDDVGHVHLDRDV GARPAHGPRADLPLGVLDRDPALRLLHEDDGQHGEQADPHDDREDAPALRLDHLAEAGRE ARRDGGEDQQGHAVAHAVLGDPLAEPHDDETSGGQGDDHEQHREDGAVAQQRQAASEQGP GAGQRGHRGRLQQGEGEGQVAGVLRQRRLALRALLVELLEARDHHAQQLHDDRRRDVGHD AEREDGHLQERPAREHVHEGVQAALGVARRQALLHRRVVHPGGRHEGAHPVDGDEPEREG DLPQQVRRPDDPGDGLEHESSCGGPVGRAPAAGRGTRRRPHRGGRCASLHGRTEGPGPER LLRTRALGRWVGVSEGLGGPAGGLDLLHGGRGEGVRLHLHGRGDLPRAQHLHGLAATDEA LGHERVHGDLTALGEVRGELVQVHDLVLRAERVLEAAELRQTHLQGQLAALEARTDLVTG LGALGAATGGLALRRLTATHAGLGGLGTGGRTQVVDLDGVVVSHC >gi|289556663|gb|ADCD01000088.1| GENE 24 11776 - 12228 751 150 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239918181|ref|YP_002957739.1| LSU ribosomal protein L15P [Micrococcus luteus NCTC 2665] # 1 150 1 150 150 293 99 1e-78 MADNDAIKVHDLRPAPGAKTAKTRVGRGEASKGKTAGRGTKGTKARYQVRAGFEGGQLPL QMRLPKLRGFKNPFRTEYQVVNLDKLSAHFPEGGEVTVDALVSKGLVRRGQPVKVLGTGE ITAAVQVKANAFSSSAVEKIQAAGGSTETL >gi|289556663|gb|ADCD01000088.1| GENE 25 14426 - 15217 700 263 aa, chain + ## HITS:1 COG:BS_map KEGG:ns NR:ns ## COG: BS_map COG0024 # Protein_GI_number: 16077206 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionine aminopeptidase # Organism: Bacillus subtilis # 1 242 13 246 248 181 38.0 8e-46 MQRAGVVLSEALDATLAAAAPGVTTAELDAVFAGVLAERGATSNFLGYYDFPASICTSVN DEVVHGIPGDRVLQTGDVLKVDGGAIVDGWHADSARTVILGSSAAGTADPADERLSAITR EALWVGIAAFASATHVGDIGDAIDNFVSAQPGEELGILEEYVGHGIGSAMHLPPDVFNYR TGHRGPKIRPGLALAIEPMLVRGSIDTKVLADDWTVVTLDGARASQWEHSVCRHDGGLWV LTAPDGGASELARFGVVPVPPGE >gi|289556663|gb|ADCD01000088.1| GENE 26 15404 - 15643 309 79 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15610598|ref|NP_217979.1| translation initiation factor IF-1 [Mycobacterium tuberculosis H37Rv] # 7 79 1 73 73 123 83 2e-27 MTIVEDMAKKEGVIEVEGTVSEALPNAMFRVRLQNEHVVLATISGKMRQHYIRILPEDRV VVELSPYDLNRGRIVYRYK >gi|289556663|gb|ADCD01000088.1| GENE 27 15679 - 15792 193 37 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239918176|ref|YP_002957734.1| LSU ribosomal protein L36P [Micrococcus luteus NCTC 2665] # 1 37 1 37 37 79 97 7e-14 MKVQPSVKRICDKCQVVRRKGRVLVICSNPRHKQRQG >gi|289556663|gb|ADCD01000088.1| GENE 28 16067 - 16435 601 122 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239918175|ref|YP_002957733.1| SSU ribosomal protein S13P [Micrococcus luteus NCTC 2665] # 1 122 1 122 122 236 98 3e-61 MARLAGVDIPREKRVIIALTYIYGVGKTRAEETLSATGIDPNIRVKDLSDEQLVQLRDHI EGSYKVEGDLRREVAADIRRKVEIGSYEGLRHRRGLPVRGQRTKTNARTRKGPKKTVAGK KK >gi|289556663|gb|ADCD01000088.1| GENE 29 16519 - 16923 674 134 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239918174|ref|YP_002957732.1| SSU ribosomal protein S11P [Micrococcus luteus NCTC 2665] # 1 134 1 134 134 264 100 1e-69 MPPKTRASAARKPRRKANKNITVGQAHIKSTFNNTIVSITDTTGAVISWASSGEVGFKGS RKSTPYAAQMAAEQAAKRAQEHGMKKVDVFVKGPGSGRETAIRSLQAAGLEVGSIQDVTP MAHNGARPAKRRRV >gi|289556663|gb|ADCD01000088.1| GENE 30 17026 - 18054 1014 342 aa, chain + ## HITS:1 COG:MT3564 KEGG:ns NR:ns ## COG: MT3564 COG0202 # Protein_GI_number: 15843052 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, alpha subunit/40 kD subunit # Organism: Mycobacterium tuberculosis CDC1551 # 11 327 1 317 347 466 76.0 1e-131 MADARRKEMSVLIAQRPTLTEEVVSDHRSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGAA VTSIRVDGVLHEFSTVNGVKEDVTEIILNIKKLSVSSENDEPVVAYLRKQGAGVVTAADI TAPAGVEIHNPDLHIATLNAKGKFDMELTIERGRGYVTAAQNKSADAEIGRIPVDSIYSP VLKVTFKVEATRVEQRTDFDRLILDVETKENMLPRDAVASAGSTLVELFGLARSLNVEAE GIDLGDEPEVVEGSADLAQPIEELELTVRSYNCLKREGIHTVGELVGRSEADLMDIRNFG AKSIDEVKEKLQELGLSLKDSPAGYDPQAHARQMDDDPFSDF >gi|289556663|gb|ADCD01000088.1| GENE 31 18129 - 18857 1212 242 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239918172|ref|YP_002957730.1| LSU ribosomal protein L17P [Micrococcus luteus NCTC 2665] # 1 242 1 242 242 471 98 1e-132 MPTPTKGPRLGGSPAHERIMLANMSAQLFEHKSITTTLTRAKRLRPYAERLITFAKKGDL PARRKVQGLIAAKNRTNKAVVHELFTVIGPAMAERNGGYTRITKIGNRHGDNAPMAVIEL IMDPISGKQAVVREAEQAAASAPAAPAESAPVEAVDPAATEEVTVAESQEAAAEIDGAVP TNEDGSAPAEATIKGNASSKKYHVPGSRWYDQTTAEVWFSTVEEAKAAGFEPAGGEAAQK MA >gi|289556663|gb|ADCD01000088.1| GENE 32 18971 - 19864 621 297 aa, chain + ## HITS:1 COG:Cgl0551 KEGG:ns NR:ns ## COG: Cgl0551 COG0101 # Protein_GI_number: 19551801 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthase # Organism: Corynebacterium glutamicum # 17 295 4 280 294 190 45.0 3e-48 MSEQHRPDAPPAPGEPASVRVRLDLAYDGGAFHGWARQPGLDSVQGALEDGLERILRRPV RTVVAGRTDAGVHARGQVAHLDLTETEWAGLTRGRPGLEPAASLTRRLGGVLSGWGGAVV VHGAGRAPAGFDARFSALWREYEYRIDDAPAARDPRTRGFTHWHGAALDDRLMALEADAV LGLHDFLSFCRPRAGATTIREVQHLEVRRDEDGVVRVRIRADAFCHNMVRAIVGALLQVG EGAREPGWLARRVARPARDSEVRLAPPGGLTLLAVGYPDEAEELRRRAEGTRAKRTL >gi|289556663|gb|ADCD01000088.1| GENE 33 19935 - 20585 758 216 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239918170|ref|YP_002957728.1| LSU ribosomal protein L13P [Micrococcus luteus NCTC 2665] # 70 216 1 147 147 296 99 2e-79 MPAPGCVVPRVAQLHGLQLAPHPRGIGPGRLPALTWGTGAHGELTARARRNHDPAGRCCG PPPTLKADNVRTYSPKPGDADRQWHIIDATDVVLGRLASHTATLLRGKHKPTFAPHMDMG DYVIIVNAEKVALTGAKLEKKRAYRHSGYPGGLKSQSYAELLETNPVRAVEKAVKGMLPK NSLAAQQLSKLKVYKGAEHPHTAQQPQTFEIGQVAQ >gi|289556663|gb|ADCD01000088.1| GENE 34 20627 - 21115 810 162 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239918169|ref|YP_002957727.1| SSU ribosomal protein S9P [Micrococcus luteus NCTC 2665] # 1 162 1 162 162 316 98 2e-85 MSINENDDVELTSYTSESTATAEAPVASERPALTVPGSAVGRRKEAVARVRLVPGSGQWT INGRALENYFPNKLHQQEVSDPFTLLELTGAYDVIARIHGGGPSGQAGALRLGISRALNE IDREHNRPALKKAGFLTRDARVIERKKAGLKKARKASQFSKR >gi|289556663|gb|ADCD01000088.1| GENE 35 21537 - 21758 128 73 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|289706564|ref|ZP_06502914.1| ## NR: gi|289706564|ref|ZP_06502914.1| hypothetical protein HMPREF0569_2242 [Micrococcus luteus SK58] # 1 73 17 89 89 92 100.0 5e-18 MADGLETGALLVVRLHDGPRGVGRVRGEEHGLLRVRVVVPRVQGGQVGGRELPATHGVGL PRGEAVELLTLGH >gi|289556663|gb|ADCD01000088.1| GENE 36 21669 - 22043 157 124 aa, chain + ## HITS:1 COG:PA0141 KEGG:ns NR:ns ## COG: PA0141 COG2326 # Protein_GI_number: 15595339 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Pseudomonas aeruginosa # 1 64 216 279 298 87 64.0 8e-18 MFFSTHTADASWAVVKSNDKKRARLEAIRHVLHTLPYPDKDERIVHRPDPQICGPANELA EYGEVSGGSFPRVRGRVQPRSSSRYSGVTCASSKRLSAPKASETWYSPEARERRTSSRRI GSLA >gi|289556663|gb|ADCD01000088.1| GENE 37 21899 - 22699 608 266 aa, chain - ## HITS:1 COG:no KEGG:Mlut_16840 NR:ns ## KEGG: Mlut_16840 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 266 1 266 266 526 98.0 1e-148 MPDVTPPPPSRSWTRRSVLGGTGLAIAAGVAGCGRDEQAEQSSEGDEQATRLPAPDIITT AQWGAMQPNYYLQTLNERPSYLVIHHTTTPNVTDGSREAAESIAQVVQNAHMSPANDWGD TGQHFTVSRGGFAMEGRHGSRHALEGGQTFMLGVHALGFNAYALGIECEGLYMLNPPPQS LYTGLVPLVAYICQQYELPPSRIIGHRDVTATSCCGDAFYAKLPILREDVRLSLASGEYH VSEAFGADNLFDDAHVTPEYLEEERG >gi|289556663|gb|ADCD01000088.1| GENE 38 22862 - 24217 1174 451 aa, chain + ## HITS:1 COG:Cgl0567 KEGG:ns NR:ns ## COG: Cgl0567 COG1109 # Protein_GI_number: 19551817 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Corynebacterium glutamicum # 1 443 1 444 447 417 60.0 1e-116 MSRLFGTDGVRGLANETLTVELSVQLAQAASPVLGAEAFDAGRRPVAVVARDPRISGEFI AAAVQAGLASSGVDVWDAGVLPTPAAAYLVGDLDADFGVMISASHNPAPDNGIKFLARGG EKLTDAQEDEIIRHLEGVTPRRPQGADVGRVRVFADAEDRYVLHLLQTLPHRLDGLKVVL DCAHGAAAGCSPEAFRAAGAEVVVIGASPDGLNINDGYGSTHLEKLQAAVREHGADLGIA HDGDADRCLAVDERGEVVDGDQIMGVMAVALKDRGVLRDDTLVVTVMSNLGLKLAMGREG VQLVETQVGDRYVLAGMKLGDYSLGGEQSGHVIFSDHATTGDGVLTGLQLASRVAETGTP LSELAAVMDRLPQVLVNVRGVDKSRAADDVAVQAAVAEAEARLGETGRVLLRPSGTEPVV RVMVEAPDEETAGREAQVLADVVQRELRLHD >gi|289556663|gb|ADCD01000088.1| GENE 39 24226 - 24453 126 75 aa, chain + ## HITS:1 COG:no KEGG:Mlut_16820 NR:ns ## KEGG: Mlut_16820 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 75 1 75 75 114 98.0 1e-24 MTSDAAPRPRRWTLFAGLLAGLAVVWSAAFLAVDAPVCARQSAPVEWLPCLDPDRQDSEV APDAGSSADRTTSRP >gi|289556663|gb|ADCD01000088.1| GENE 40 24548 - 24970 435 140 aa, chain - ## HITS:1 COG:Cgl0854 KEGG:ns NR:ns ## COG: Cgl0854 COG1970 # Protein_GI_number: 19552104 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Large-conductance mechanosensitive channel # Organism: Corynebacterium glutamicum # 1 130 1 132 135 102 46.0 1e-22 MLQGFKDFIMKGNVIDLAVAVIIGAAFGKIVNALVEAVLMPLIAAAVGSPNFDSFAVLTV NNNDVKFGVLLTAIVNFLLIAAAVYFAIVMPMNKMIEARNRRLGIDPAEEEVAADVAVLT EIRDLLAERRGGPTSGTTAL >gi|289556663|gb|ADCD01000088.1| GENE 41 25030 - 25773 434 247 aa, chain - ## HITS:1 COG:BS_yodJ KEGG:ns NR:ns ## COG: BS_yodJ COG1876 # Protein_GI_number: 16079020 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanyl-D-alanine carboxypeptidase # Organism: Bacillus subtilis # 8 234 12 264 273 135 33.0 6e-32 MRRPLPLAALAALALLAAGCGTPAAGPSSATPASGSSSAAASSGAASSTAPSSSTHADPA ALDVVVNKTRPVAPPDWAPSDLVAVPGSELPLRAEAATAAGDLLDAATAAGHDLTTLSAY RSYDYQVRTYGHWVDELGRAEADRVSARPGYSEHQTGLAWDVGDAATPACDLEACFGDTA AGRWVAAHAAEYGFVIRYPAGAEDVTGFDHEPWHLRYVGSTEAARVEAAGGVLETAWGLP PAPDYAD >gi|289556663|gb|ADCD01000088.1| GENE 42 25777 - 26796 832 339 aa, chain - ## HITS:1 COG:VC0320 KEGG:ns NR:ns ## COG: VC0320 COG1072 # Protein_GI_number: 15640347 # Func_class: H Coenzyme transport and metabolism # Function: Panthothenate kinase # Organism: Vibrio cholerae # 32 338 70 375 375 339 52.0 4e-93 MDRVTYTPPTSELPLVGPDESADAVPDGHQRSPFVELDRQTWARLASEMAQPFDQADVER LRGLGEHLSLREVAEVYLPLSRLLSINVEASAALRSATNAFLGERTERTPYVIGVAGSVA VGKSTTARVLQEMLRRWPTTPRVELVTTDGFLHPNAVLQERGIMSRKGFPESYDRRALLR FMADVKSGAQEVRAPVYSHITYDIVPGEEQVVHRPDVLIVEGLNVLAPPRTRADGTAGLS VSDFFDFSVYVDARTSWIRSWYIDRFMGLRSGAFADPRSYFHRYSSLSDAEAQATAESIW DSINGPNLEQNVRPTRGRARLVLTKNAQHEVTRVLLRKV >gi|289556663|gb|ADCD01000088.1| GENE 43 26862 - 27917 794 351 aa, chain + ## HITS:1 COG:SP1607 KEGG:ns NR:ns ## COG: SP1607 COG1087 # Protein_GI_number: 15901447 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose 4-epimerase # Organism: Streptococcus pneumoniae TIGR4 # 2 346 4 337 339 315 44.0 7e-86 MRVLVTGGAGYLGSHTVLTLLEAGHDVLVLDSLVTATTTSLERVAELAGTRLGGSRLRLH VADIRRPEDYRGALADFGPAALVHFAGLKSPTESMTRPAAYYDVNVGGTAAVAEAALAAG ARTVLFSSSATVYGDRAPVPVAEDAATDPVSPYGHSKLMAEQVLRDVCATVDGGGLAMLR YFNPVGAHPSGRLGEDPSGVPANLMPFVARVASGAYPELRVFGADFDTRDGSAVRDFIHV MDLAEAHVAGLEWLAARVANGGGTTTRVWNIGRGEGVTVFEMVRAFEAVTGGRIPYRVVE RRPGDIAESCAAVDAIGAEVGWHARRDVTAMVRDLWAWQEANPAGFSSRTE >gi|289556663|gb|ADCD01000088.1| GENE 44 27968 - 29839 1848 623 aa, chain + ## HITS:1 COG:Cgl2219 KEGG:ns NR:ns ## COG: Cgl2219 COG0449 # Protein_GI_number: 19553469 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains # Organism: Corynebacterium glutamicum # 1 623 3 625 625 873 69.0 0 MCGIVGYIGQPQSDREHGALDVLMEGLRRLEYRGYDSAGVAVVDGGQLYHRKKAGKLANL AGELAEHPIPTGLVGIGHTRWATHGGPTDRNAHPHVADEGRLALIHNGIIENYAELREEL LAKGVEFLSETDTEVAAHLLADVYRHAAGQDLTRAMQLASQRLEGAFTLLAVHVDHPDRV VASRRNSPLVVGLGEGENFLGSDVSGFIDFTREAIELEQDQVVTITADAVEISDFRGGPA EGKRFTVDWDASAAEKGGFETFMEKEIHDQPQAVQDTLLGRTDAAGALMLDELRIDPEEL KAVDKIIVLACGTSAYAGTVAKYAIEHWCRIPVEVELSHEFRYRDPIIDPHTLVVSISQS GETMDTLMAVRYAKEQGARTVSICNTNGSTIPRESDAVLYTHAGPEIAVASTKAFLAQIT AAYLLGLYLAQLNKKLFSGQIKDILADLGAIPGKIEEILAGKDQVKELARSMADATSVLF LGRNVGYPVAMEGALKLKELAYIHAEGFAAGELKHGPIALIDDGQPVFVVMPSPLDRHSL HAKVVSNIQEVRARGARTFAVAERGDAAVRGQAEVVFEVPETQPMLMPLLTTVPLQIFAL ELATAKGYDVDQPRNLAKSVTVE >gi|289556663|gb|ADCD01000088.1| GENE 45 30010 - 31305 1184 431 aa, chain + ## HITS:1 COG:all2656 KEGG:ns NR:ns ## COG: all2656 COG1680 # Protein_GI_number: 17230148 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Nostoc sp. PCC 7120 # 47 341 47 344 414 109 29.0 1e-23 MRPTRRQFAQGMAAGLAGLALPSAVASSAVAAPQGPNPRSGRGLDERAIQTALDAVVQWP AVGAVCSVVGPAGRFDTASGTRGLHANAPARANSVARIASVTKGMVATVALQEVERGTLS LDSTIGDVLPGLWPDVEDRVTLSMLLNHTSGMPDAIWVIMRGQSLFELDFDELADVVSRS YGQRELVELAKQADWWFEPGTDYGYSNTGYVVVEMMVEAVTGRRMPELIRDRVFRPAGMH RTRLEHGTLVRGAEMQDAAVRPHEAKALETIDQSIFASAAAVNTTAADVTRFYQALMRGE LVSQQTVDLMVTPVGPAAQAGYGYGLFLVADPAPEHAGEVLVGHDGAGFGSVSLALCSRD GERAFAFTYIGRPYWQDGWDEVFSKELALMRTAFVVNAADAPASRDRLVRGGAAASRRAV ADMAARGARLV >gi|289556663|gb|ADCD01000088.1| GENE 46 31404 - 33119 1441 571 aa, chain + ## HITS:1 COG:MT1615 KEGG:ns NR:ns ## COG: MT1615 COG1523 # Protein_GI_number: 15841031 # Func_class: G Carbohydrate transport and metabolism # Function: Type II secretory pathway, pullulanase PulA and related glycosidases # Organism: Mycobacterium tuberculosis CDC1551 # 3 548 18 563 721 641 59.0 0 MHTVEIGQPYPLGATVDETGTNFALAVSREAEAVELCLVADDGTETRIPLEERHGTTWHA HVAGIGHGQRYGYRVHGPWDPARGLWHNPAKILVDPYARAFTGDYEWGQQHHSYDFDEPD RIDTSDNLGTSMLGVVVAEDFDWGDDAPPAVELTDTVIYETHVKGMTKLHPAVPEELRGT YAGMAHPEVVRHLTELGVTAVELMPVHQFVNDATLQEKGLSNYWGYNTLGFFAPHAAYAS SSEVGGQVREFKQMVKDLHAAGLEVILDVVYNHTAEGNDKGPMLSLSGLDNAGYYHLVEG DERHYMDYTGTGNSVDLSSPKALQLVMDSLRHWVTEMHVDGFRFDLATTLTRVEGEQGPD MFSGFFDVVRQDPVLRTVKLIAEPWDVGWGGYQVGNFPGLWSEWNGMYRDAVRDFWRGEP GTLGEFATRLTGSAHLYEGDGRSPGASVNFVTAHDGFTLRDLVSYNEKHNEANGEDNNDG DAHNRVVELRCRGGDRRPRGRDAARPPAPQLPGHPACQPGRAHDQPRDELGRTQGGNNNV YCQDNEISLDRLVRHGRLARGVHPRPDRAAP >gi|289556663|gb|ADCD01000088.1| GENE 47 33067 - 33534 413 155 aa, chain + ## HITS:1 COG:Cgl2054 KEGG:ns NR:ns ## COG: Cgl2054 COG1523 # Protein_GI_number: 19553304 # Func_class: G Carbohydrate transport and metabolism # Function: Type II secretory pathway, pullulanase PulA and related glycosidases # Organism: Corynebacterium glutamicum # 5 151 568 714 836 99 39.0 3e-21 MDDSLVAFTRDLIALRRDHAVFRRRHHFDGRPAARDVEAPLPDIVWLEPDATAKTEDDWG AEARSIGFYLNGHMLTRGDEDGEEPYRDFYVLMNAWWEPVPYTLPGPTFPAEWEVVVDTS SHVAPSGSHPRVRAGDVLEVQARSTVVLRQVPEGA >gi|289556663|gb|ADCD01000088.1| GENE 48 33531 - 34262 595 243 aa, chain + ## HITS:1 COG:no KEGG:Mlut_16750 NR:ns ## KEGG: Mlut_16750 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 243 1 243 243 442 95.0 1e-123 MSPQTDRGRVRRGLPRWARALGATVAALAALGLAFGAGWATHAVTDPHPDDAPRVDALLV LYSQPRVYDAAIELAASGVTDRLFVSAYLGPDGHEKLCGGPEERDPRLAGVTVECFAPDP VTTQGEVIHAADRMRELDLHHLGVLTFHQHVERARLLAERCFTPEEGRVSLYTFDAGFDR LGRLRHGVYGVLAYGKAMLTPGCDQQLPGVLQWPLDLAKRLRGQPVGDEAGAVVVGARRA GAA >gi|289556663|gb|ADCD01000088.1| GENE 49 34259 - 34639 225 126 aa, chain + ## HITS:1 COG:TP0828 KEGG:ns NR:ns ## COG: TP0828 COG0736 # Protein_GI_number: 15639814 # Func_class: I Lipid transport and metabolism # Function: Phosphopantetheinyl transferase (holo-ACP synthase) # Organism: Treponema pallidum # 1 117 1 121 125 68 38.0 3e-12 MIVGVGVDVVDVPRFRAQLERTPALRARLFTEDERHLPLRSLAARFAAKEAIAKAMGAPP GMMWHHCWIPRPDHGDGRPTVHLTGTVQAQAEALGITHWHLSLSHDGDVATAYVVAERRA AEEESA >gi|289556663|gb|ADCD01000088.1| GENE 50 34636 - 36213 439 525 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|90022317|ref|YP_528144.1| ribosomal protein S15 [Saccharophagus degradans 2-40] # 1 452 1 454 500 173 33 2e-42 MTADDLTHIAVTGSAVRTAEEPLLTAGRGPELMRAAAWALAEHAAALLRERGPVAGTIVA ALVGPGNNGGDALFALAFLRRRGVAAVAVPVRRDDDGAPRWHAEGWAALRAAGGRRADAV PPEAALVVDGVLGTGFTGEYELPAAARALPADALVLACDAPSGVDADTGEVRGEALRADA TVTFGALKSGLVLGEGAARAGTVHVVDIGLGPHLPTSPAARLGVMDEAAARAAHPAPAAE AHKYTRGVVVVVAGSERYPGAAVLASAGALQTGAGMVHHSGPQTTRDLVLAAHPEALVSA EGPEPSRADAWVAGPGLDTEHDARRRWAGVLAALEERPEAALVADASALDLVTAAELRSL RAAGTPVVLTPHAGEWSRLRERVPADGADAADPLAALRAWTAAHGATVLLKGPRTLVVAP DGEAWVVTGGGPELAMGGTGDVLSGAIGAVLAADVARRSKARQAGEDPGPAPTARLAAAA AWLHARAGADQARAGRITTATLPAALGARVAHLWWPDDAEPGAVR >gi|289556663|gb|ADCD01000088.1| GENE 51 36210 - 37415 973 401 aa, chain + ## HITS:1 COG:MT3532 KEGG:ns NR:ns ## COG: MT3532 COG0787 # Protein_GI_number: 15843019 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Alanine racemase # Organism: Mycobacterium tuberculosis CDC1551 # 15 390 38 402 408 238 44.0 2e-62 MSRADVSPVDTERAARIDLAAVRHNVGVLQERIRCPDGSRPLLTAVVKADAYGHGAVAVA RAAAAAGADRLGVAHVREALALRAAGVRLPVLAWLHTGATDFAAAVEAEVTLGVSGWDLD AVADAVCGLRGRGGAGPEARAVLHLKADTGLGRHGCPPERWPAFVERAAELEAAGLVRVE GVFSHLGVADEPDRAAETTAQLLRFERMAAEAAETLGHPLLRHLANTPATLSRPDTHLDM VRVGLGLYGLSPFADVTAAELGLRPAMSLVTVLANVKAVPAGQGVSYGFRHVTAEPTTLG LVPVGYADGVPRVVEGTRVHVGGRTVPVVGRIAMDQFVVDLGPDATDAPGDAVELFGPAS GIPVEEWAAAAGTINYELVTRIGGRVDRQHVDPTPTQEARP >gi|289556663|gb|ADCD01000088.1| GENE 52 37412 - 38038 488 208 aa, chain + ## HITS:1 COG:Cgl0573 KEGG:ns NR:ns ## COG: Cgl0573 COG0802 # Protein_GI_number: 19551823 # Func_class: R General function prediction only # Function: Predicted ATPase or kinase # Organism: Corynebacterium glutamicum # 18 139 7 132 165 82 47.0 5e-16 MSDHAIPAPGPTLPEPVLTATVPLEGADGTRAFGRALAGVLRAGDVLILMGDLGAGKTTF TQGLASGFGVASGVVSPTFVLSRVHPAPADAPAGTPDLVHVDAYRLRSAGELTDLDLDAS VDRSVTVVEWGRGMAESLAGFPEDPDASWLDIEIVRTRGGEDALAASAGEGEDGIVTDFS DEDGGQAEELRSAIVTGRGPRWAGVVLP >gi|289556663|gb|ADCD01000088.1| GENE 53 38049 - 38720 294 223 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15827107|ref|NP_301370.1| putative acetyltransferase [Mycobacterium leprae TN] # 1 213 1 203 359 117 40 1e-25 MALLLAIDSSAAASVAVLRDGEELARWATDDTHAHAEVLAPAVQTVLDQAGVTGTALDAL AVGVGPGPFTGLRAGLATAAALGLAWDVPVHGVRSLDALAHTAGVDAFRHGIEEFVVATD ARRREVYWAHYAQVGGQPTLLHGPFVSPADEVTPLPVYGAGAGLYPEALRAVPGWEAATP SAVGVGQVAELALRRGRGLVPAEPLYLRESDAKVPGPRKRAGA >gi|289556663|gb|ADCD01000088.1| GENE 54 38717 - 39304 288 195 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227982014|ref|ZP_04029271.1| (SSU ribosomal protein S18P)-alanine acetyltransferase [Thermomonospora curvata DSM 43183] # 27 193 5 148 162 115 42 7e-25 MSPAEPAPTGDGRPAEDGHGLPPGYLLRPMTVWDVPEVLAHEATLFPLDAWPAHFYEEEL AQTGPAGGRDAHGRPPTRDYRVVVRDVAAPGSADDDGPAPGEIVGYGGIMVVGDVADVQT VGTVAAAQGRGIGAAQLRWMAAEAAARGASSLMLEVRASNAVARRLYLRHGFEELHVRRR YYPGGEDAVIMRKAL >gi|289556663|gb|ADCD01000088.1| GENE 55 39331 - 40422 679 363 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229232313|ref|ZP_04356740.1| (SSU ribosomal protein S18P)-alanine acetyltransferase [Cryptobacterium curtum DSM 15641] # 2 332 511 831 860 266 46 1e-81 MPTATAAPLVLGIESSCDETGVGVVRGTALLAHEVASSVEEHVRFGGVIPEIAARAHLEA LVPTIRRALDTAGVTLEDLDAIAVTSGPGLAGALMVGVAGAKALATALGTPLYGINHLVA HVGVGMLDGVRPAQWDDLPADLGALLVSGGHTEILRVGRISSEVELLGSTIDDAAGEAYD KVARLIGAGYPGGPVIDRLAAEGDPTAFRFPRGLTAGKFVGSAEEPGPHRHDWSFSGLKT AVSRAVEQFEARGLEVPRADIAASFQEAVADVITAKAVRACREHGLTHLMLGGGVAANSR LRALLADRCRSAGIELTVPPVNLCTDNGAMVAALGARLVRDGVAPSDAWFGADPGQPVEV VSV >gi|289556663|gb|ADCD01000088.1| GENE 56 40473 - 41003 449 176 aa, chain + ## HITS:1 COG:no KEGG:Mlut_16670 NR:ns ## KEGG: Mlut_16670 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 176 1 176 176 274 95.0 1e-72 MTGHEHPRPRSTSAAVDEQMLEDFLNQHLLGSRSGVKAFRAAEQTWAGTSQEAALRRLGD AVQDDQDRLEALIGELGLRTPLVDRAAGAAAEVGGRLNPVNALRTRGSGWTQIELDLLQG MLQAKSAMWHVLEQLAPHLPAVDAAEMHALRENAADQQREVQRITSATLEGRFLAG >gi|289556663|gb|ADCD01000088.1| GENE 57 41012 - 42043 767 343 aa, chain - ## HITS:1 COG:Cgl2082 KEGG:ns NR:ns ## COG: Cgl2082 COG0053 # Protein_GI_number: 19553332 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted Co/Zn/Cd cation transporters # Organism: Corynebacterium glutamicum # 20 326 15 321 328 306 52.0 3e-83 MTRQDTREKGPSGRRFGATELPPEIERVVRQAKRLEWATLGVIVVTIVLVAVVMGSSQAM RAAWIEDLLSLIPPIAFLVALRVARMAPTRARPYGSHRSVGVGHLVAAVALSVMGVVLVG DSILGLVTAEHPPIGTFDLFGHTVWQGWFMMAVMALSVPGPMILGHKKLRLAEQLHDRVL YADADMNKADWQTGVATIVGVAGIGLGWWWADSAAAIFVGVSIVLDGWKNLKEAVTNLAD RRAATIDGARPHPLIDRAERVAWAEPWVRHAGARVRDEGHVFHVEMFVVPHEGADVTVGR CCALRDAIAALDWKLQDVVVAPVAELPAEVHGGGPEEHQTGEE >gi|289556663|gb|ADCD01000088.1| GENE 58 42040 - 42543 337 167 aa, chain - ## HITS:1 COG:Cgl2081 KEGG:ns NR:ns ## COG: Cgl2081 COG0834 # Protein_GI_number: 19553331 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Corynebacterium glutamicum # 39 164 1 122 124 68 39.0 4e-12 MRTMTLTRRTALTGLLGGAALGFTACTSSGYPADPEGTLDRVTGGVLRAGVVHHPPHVDA SGAEPVGPEPDLIRGFAAAHDARVEWTVAGEEALMTALEKGDMDLVAGGLTSASPWTSHA SITRHYAEAQGPDGEPVKLVMAVPLGENQMLTALESYFDQRAAEAAR >gi|289556663|gb|ADCD01000088.1| GENE 59 42540 - 43496 634 318 aa, chain - ## HITS:1 COG:no KEGG:Mlut_16640 NR:ns ## KEGG: Mlut_16640 # Name: not_defined # Def: nucleoside-diphosphate-sugar epimerase # Organism: M.luteus # Pathway: not_defined # 2 318 27 343 343 563 98.0 1e-159 MSSIVGVSRRGPDRAGAPYDGVEWHRLDVAEPTAAGRLREIVAGADAVVDLVWVIRPNRD RDHLRAVNVAGNERVFRAVAEAGVPHLVYASSVGAYGPGPKGRAVAESHPTTGVPTSHYA AQKAEVESILDRVQAEHPELLVTRLRPGLIFQSAAGPEIKDYFLGDLVPARLVARLRTPV LPFPRGLRFQALTAQDVADAYWRVIAHRAGGAFNVAADPVLDAHTMGTVLGARRILELPV GLFRAAAALTYRARLQPTDPGWVDMAAAVPIMDTTALRAATGWSETTDAREAVRLVLDHL DGAEGLGNAGHRSHSPTE >gi|289556663|gb|ADCD01000088.1| GENE 60 43568 - 44743 918 391 aa, chain - ## HITS:1 COG:alr0897 KEGG:ns NR:ns ## COG: alr0897 COG1063 # Protein_GI_number: 17228392 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Threonine dehydrogenase and related Zn-dependent dehydrogenases # Organism: Nostoc sp. PCC 7120 # 1 391 1 389 389 326 46.0 5e-89 MRALTWQEKRNVAVEDVPDPRIQEPTDAIIEVTSTGICGSDLHLYEVLGPFMDAGDVIGH EPMGIVREVGSEVTHIRPGDRVVVPFTISCGRCWMCQRGLQSQCETTQVREQGCGAALFG YSRLYGSVPGGQAELLRVPHADYGPVKVPHTGPDEQWLFLSDVVPTAWQGVQYANVPDGG TLAVLGLGPIGQLAARIGVHRGYRVIGVDPVPERRAMAARHGIEVLDADGGEAEVLRERT GGRGPDAVLDAVGMEAHASPVGHAAHTAVGLLPDALGRAAMKTAGVDRLSALHTAIDAVR RGGTVSLSGVYGGMKDPMPMLTLFDKQITLTMGQCNVRRWVDDLLPLLDDPSDPLGVLDL ATHTAPLEDAPALYETFQKKEDGCVKVVLKP >gi|289556663|gb|ADCD01000088.1| GENE 61 44826 - 47183 1434 785 aa, chain - ## HITS:1 COG:MT0448 KEGG:ns NR:ns ## COG: MT0448 COG2170 # Protein_GI_number: 15839820 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Mycobacterium tuberculosis CDC1551 # 375 746 5 365 383 332 47.0 2e-90 MGAGQAVPHGLGRDEVGQVGVQLPRRHGPGRGQIRHESGPDDGAVRLVQDRADEPRHARL PHGLDLGRVAEVRPGDELRRRRLPAPDGHDARRPPHPGAGRRVEPQGGLHDVAVEAHPLG LGARRHGLVREPRAELDPDRDARRGDVRHDAQGRGERLGVEHARGPAPADLTACGVQPHR VRLGGHTGAGPGHGVAVHHTRTAVAGEVHLGGRGDDGVPLHRHDVQAPVGEGARVQAETT AEVGDAPGPRGRQSVRVQARDQRAGGLLQAVAGEQHPARLRPEAGLRPGPQRGLGQRGGH ALRRMPGRTQAGGDRERVGLAVPGEGVEQRAALRLEDGSQGGGVRLRGGGRGARRAGGGA GAGHAPHPRSEAWTPGADPAGASRMVGMTLPFADSAQSTLGIEWELALVDAVSGELRSEA PDLLRALHVAEGLADDDVNPHMTSELLQNTVELVTGVHERVDAATADLGRIAARVADAAA ARGISLFCQGTHPFADAIAQPSTPSERYDRMLDLTQYWGRQLLIFGVHVHVGLDDVSKAM PVVNGLVNRVPHLLALSASSPFWAGTDTGYQSQRTLLFQQLPTAGLPFQFQEWEDFERCV AQMEQVGMIADVTECRWDVRAVPRLGTVEMRACDGLATLEEIAAVTAYTQCLVDDLSASL ERGETVEVLPPWHVQENKWRAARYGMDATVIVDARGTQVPLAEHLPAEIERLTPVAERLG CAAELAGVQAMIDDGGAARQRRVEAQALAGPPAAGEDADDAVAPLRAVVLDAAARTRASL DGRAG >gi|289556663|gb|ADCD01000088.1| GENE 62 46917 - 47423 330 168 aa, chain + ## HITS:1 COG:no KEGG:Mlut_16610 NR:ns ## KEGG: Mlut_16610 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 168 276 443 443 278 98.0 4e-74 MTVRGGETTTAQLVSGADFGDSPEVEAVGEAGMAGLVGAVLHEPDGAVIRAGLVTDLAAS WPVPTRQLDPHLAYLVAPEPVRDGLARAHRIEAVHGFHLASLRRWAKETGVGRLDVKKRG IRETPEEVRRAVLGGAKPGRRGGAGRHATLVLARVGRSRFALEVTPLD >gi|289556663|gb|ADCD01000088.1| GENE 63 47594 - 48658 902 354 aa, chain + ## HITS:1 COG:Cgl0787 KEGG:ns NR:ns ## COG: Cgl0787 COG4607 # Protein_GI_number: 19552037 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type enterochelin transport system, periplasmic component # Organism: Corynebacterium glutamicum # 9 353 5 336 338 213 41.0 4e-55 MPRSVRAPRLTSLALTSVAALALVGCSAGGAATGSSSATASGESSASTSASGGSSAASGG IATGVTVTDMSGTEVTLPEEVDSVIATDNRIFRTLDDWGVELTAAPKQIMYKGEGGPSYL QDDSVVDIGNHREPDMELFVTAEPDVVFNGQRFNERKAEIDELTGDAAVVDTNFDVTQTP MDEGLKKLTTLLGEATGHEADAEKLIADFDAATQRAKDAYDPEQTVMGLIASGGELSYVA PSTGRAIGPFFDMLDLTPALEQSGTDNHQGDDISVEAIAKSNPDWLIVMDRDAAVGEENA TAAELIERSEALQDVTAVKEGNIVYLPADFYVAEDIQNHTTVMEDLAKAFEGAQ >gi|289556663|gb|ADCD01000088.1| GENE 64 48880 - 49713 742 277 aa, chain + ## HITS:1 COG:Cgl0788 KEGG:ns NR:ns ## COG: Cgl0788 COG4606 # Protein_GI_number: 19552038 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type enterochelin transport system, permease component # Organism: Corynebacterium glutamicum # 1 277 57 333 333 305 65.0 9e-83 MFAITRVPRTVALVLAGASMAMCGLIMQLMTQNRFVEPSTTGTTEWAGLGLLVTMVLMPG AGLVTRMVGAILFAFVGTLVFFLFLRRVRLQSSLIVPIVGIMLGAVVGAASTFLALQTDM LQQVGAWFAGSFTSVVRGRYELLFLVLIVCVAVFVIADRFTVAGLGKDVATNVGLNYDAV ILTGVAMVAVATGVVTVVIGALPFLGLVVPNLVSMVRGDNLRTNLPWVVMVGVWIVIVCD LIGRTVIAPFEVPISLILGLVGAIVFLALLLRQAKHG >gi|289556663|gb|ADCD01000088.1| GENE 65 49706 - 50794 934 362 aa, chain + ## HITS:1 COG:Cgl0789 KEGG:ns NR:ns ## COG: Cgl0789 COG4605 # Protein_GI_number: 19552039 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type enterochelin transport system, permease component # Organism: Corynebacterium glutamicum # 19 362 22 371 371 304 56.0 1e-82 MAEPLATAPGRLPAPPGGATAAGPVDADAPRRSGAFVTAADRRRYAVVVAVLAAVAVLST AGVLLWGNEAEPGSRAFWMIARMRVESLGVIGIVALCHSFATVSFHTVTGNRIITPSIMG FEALYTAVSTAAVYVLGAAGVAVLTGVGPFLAQAALMVVLATALYSWLLSRPYGSVHLML LVGVVLGGGLAALSTFMQRLLDPNSFDLLSARLFGNISNARTEYVAIAAPIAVVVCALLW LRSRRLNTVALGADAATNLGLHHRRELMVTLLLVSVLMAMTTALVGPMTFLGFLVATLAY SLVDTHDHRFILPVAALAGYAVLTSAYFVLRHVFYAGGAVTVVIELIGGITFLVVVMRKG RL >gi|289556663|gb|ADCD01000088.1| GENE 66 50791 - 51546 262 251 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 223 1 226 245 105 29 7e-22 MIELRGVVKRHSDEVCIGPVDLDIQAGGVTALVGPNGAGKSTLLTMIGRLQDADAGTIAV GGHDITTTPSRKIAQTLSILRQENHFVTRLTVRQLVGFGRYPYTRGRLTLEDERHVSDAI DFLNLGPFENRYLDQLSGGQRQRAYVAMVLAQNTEYVLLDEPLNNLDMQHSVQMMQQLRR AADELGRTVVIVLHDINFAAHYADRIVAMGDGQVVETGTPAEILRPEVLERIFKTPCSVV DGPHGPLAVYY >gi|289556663|gb|ADCD01000088.1| GENE 67 51827 - 52804 453 325 aa, chain - ## HITS:1 COG:no KEGG:Mlut_16560 NR:ns ## KEGG: Mlut_16560 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 325 1 325 325 565 98.0 1e-159 MPFAPDLPLVPVFTTRDVLERGLPPSRVRRSDVLRLARGIHRRRDMPLRTWESAGLPPPH HGVGLDLLTALLRSRPDAVLSHETAAHLHGLPLPPGGATRRAAVEITLHRGTARARIPGV MEHRRPLPAGHVTSVLGLRVTTPERTWLDLCSIGHPWDEASLVSAGDHLVRHPWSPRGRR PPVTTVTAVHEAMRPLGRFVGRPRATAALERVRVGADSPQETRLRLALVEAGLGEPTLQH VFDPGRRDAPEADLWFEDCRLVLQYDGEVHRSAEQHARDARRDQYYAERGQMTLHVTGRD VGEGYARVIEAVLRRRAQVSNGWDA >gi|289556663|gb|ADCD01000088.1| GENE 68 53434 - 53730 328 98 aa, chain + ## HITS:1 COG:MT3527 KEGG:ns NR:ns ## COG: MT3527 COG0234 # Protein_GI_number: 15843014 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Co-chaperonin GroES (HSP10) # Organism: Mycobacterium tuberculosis CDC1551 # 3 98 4 100 100 128 77.0 2e-30 MSVSIKPLEDRIVVRPLEAEQTTASGLVIPDTAKEKPQEGQVVAVGPGRVAENGNRVPVD VAEGDVVLYSKYGGTEVKVGGEEYLVLSARDVLAVVTK >gi|289556663|gb|ADCD01000088.1| GENE 69 53839 - 55446 1491 535 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167855908|ref|ZP_02478658.1| 50S ribosomal protein L28 [Haemophilus parasuis 29755] # 2 528 3 529 547 578 56 1e-164 MAKQLAFNDDARRALQAGIDKLADTVKVTLGPKGRNVVLDKAWGAPTITNDGVTIAREVE LEDPYENMGAQLAKEVATKTNDIAGDGTTTATVLAQALVNEGMRQVAAGAAPGEVKRGIE VAVAAVEQRLQENARPVEGQEVAHVAAISAQNDEVGELLARAFDTVGTDGVITIEESSTT STELDVTEGMQFDKGFLSPYMVTDAERQEAVLEDAYVLINSGKISNVQELLPLLEKVLQA NKPLFVIAEDIEGEALSTLVVNKIRGTLNVVAVKAPGFGDRRKAMMQDIAILTGAQVVSP DLGMKLEQADLDVLGSARRITVTKDETTIVDGGGAAEDVEARVAQIKAESAATDSDWDRE KLQERLAKLSGGIGVIRVGAATEVELKERKHRIEDAVSSTRAALEEGIVAGGGTALINAL TVLDTDADVQALTGDAAVGVDIVRKALKQPLRWIAQNAGEDGYVVVSKVAELEPNHGYNA KTGVYGDLIADGVIDPVKVTRSALANAASIAALVLTTETLVADKPAEEDEAGHQH >gi|289556663|gb|ADCD01000088.1| GENE 70 55619 - 55876 116 85 aa, chain + ## HITS:1 COG:no KEGG:Mlut_16530 NR:ns ## KEGG: Mlut_16530 # Name: not_defined # Def: choline/carnitine/betaine transport # Organism: M.luteus # Pathway: not_defined # 1 76 53 171 651 78 55.0 9e-14 MRYGVDPVILAVVGLLVVGFVVWGVLQPDAVLAVSSAALDWVMLHAGWLFAAGIGIGIIF FGPYEPLTYYLAPRPGRTRRGARRR >gi|289556663|gb|ADCD01000088.1| GENE 71 55825 - 56106 93 93 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSSPSAIEAPRATPDTAEKMVPIVSTTMIPSATVFPGADQPETISTPRPICRAPMPSEAA VPRAHAPVQRGLGQRARHRLLAPRLVRPGRGAR >gi|289556663|gb|ADCD01000088.1| GENE 72 56087 - 56983 711 298 aa, chain + ## HITS:1 COG:Cgl2282 KEGG:ns NR:ns ## COG: Cgl2282 COG1292 # Protein_GI_number: 19553532 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Choline-glycine betaine transporter # Organism: Corynebacterium glutamicum # 1 280 341 613 630 270 48.0 3e-72 MAEGEDMQEFLPHWTIFYWAWWVSGAPFVGVFMAKISKGRTIRQYVLGALLIPASVIVGA FTLIGGTTIWLQRTRGSVAPDGTAASLPAPAEIFWVVLDQLPGGGLVAPVVIVMLAVFFI TTADSASIVNSQLSQRGAPAPRRTITVFWALCMAGIAVVMLLTGGDTALTGLQNLITITA LPFTVVLVLMAVALQRELANDPFAIRDRYQRAAVEKATVRGLVQYGDDFAFTVERTPPGS WYAAGEGFDSTAAEITDWYRRTDEDGNPVDYDYVLGEYPDEGDGDDADGPAGAGPSGR >gi|289556663|gb|ADCD01000088.1| GENE 73 57039 - 60149 1930 1036 aa, chain + ## HITS:1 COG:ML0387_3 KEGG:ns NR:ns ## COG: ML0387_3 COG0516 # Protein_GI_number: 15827114 # Func_class: F Nucleotide transport and metabolism # Function: IMP dehydrogenase/GMP reductase # Organism: Mycobacterium leprae # 743 1036 1 292 292 348 69.0 5e-95 MGAGLDDLLLVLAEDVAARGVVAVPVEDALLGGHERGDEGLAGHVEGGAAHVHDRVDGQE QGHALEGQPGGGQREREHHGGAGGAGGRGGAQHGHECHEGVLAQAHVDPVELGDEHGGHG RVDRGAAVHLGGGAQRDGEGGVAGGHAEVALGHPLGDGQRAEGGAGDEAELERRPHAGEE LLDGEPVQARQQRVHHEHHEGQAHVDRHHELGQRAHRGPAVRGHGVAQQADGADRGQTDD PPQQLLDDREHRAGEREERGGLLADLERGHAHDDRDHEDLQHVERGGGGERAVLARRGLD GQAEEVRRHQGGQEVEPADVLGLVRRRRGLAGAHARLQHDADGEADEHRDQARDGKPEQG LGGQAGRVGHLGQVGDGGDDGEEDQRDDRGLQQADVDAADGGQRLAEPGRVLGGVPRRAG DQAQDEAEDEGGGDLPAEVRRPGGEPASGRRCGGGLCGAHPGEIRRTNTMTPKRIASCDV VVTSVSSPRGPARGSCDVPRTRVTGLTPGHRIAETPVPKGAFVTTTSTGPSPEPVHSSSD PFGFFGLTYDDVLLLPNATDVIPADADPATRLTRNIRLNIPIVSAAMDTVTEAPLAIAMA RQGGMGIIHRNLSIEDQARHVDTVKRSESGMIKDPVTIGPDATLADLDELCAQYRVSGLP VVAEDMTLLGIITNRDTRFIPREEWATRTVDTAMTRMPLVTAQEGVSRAETIRLFSQNRV EKLPLVDDAGRLTGLITIKDFDKAEQYPDAAKDDEGRLLVGGAVGFFGDGWERAMALVEA GVDALVVDTANGHTHGVLDMIARLKKEKAAAHVDVIGGQAATYAGAKAIVDAGADAVKVG VGPGSICTTRVVAGVGVPQITAIYEAAKATRPAGVPLIADGGLQHSGDIGKALVAGADSV MLGSLLAGTAESPGDLVFYQGKQFKTYRGMGSLGAMQTRNGTRSFSKDRYFQADVPDEDK LIPEGIEGQVPFRGPVASVVHQLVGGLRQTMFYTGASTVADLKENGRFVRITAAGLKESH PHDIMMTVEAPNYRSR >gi|289556663|gb|ADCD01000088.1| GENE 74 58467 - 62318 1773 1283 aa, chain - ## HITS:1 COG:no KEGG:RMDY18_05370 NR:ns ## KEGG: RMDY18_05370 # Name: not_defined # Def: hypothetical protein # Organism: R.mucilaginosa # Pathway: not_defined # 739 1229 1 491 502 290 49.0 2e-76 MVLAWVRRGLRRDGPFLGLTRGRPAPLEFLGAPLRGPLLVEPALVLVPEVVVADEPPPQE QGEAGEEHPLHGVEDVEPDDLGLLRLRGHPHRLEPAGAGRARLGACGVDHLERRDVRRVG RLVPHVHQLGRGQAAVQEPVGGVLGRGLARQRPVRGQQAPGDGDLPGGRGVHDVGVGRPA ADHRDDLAVRGAGHPQGRDRPVAVAAVQQARADQDVRAGHELPLDRDDLVGLRAEQGLVG AHVLQERHGVLGLGARRRRVRLRGLELPLGQRHEDRGRHEGQHQGGQPDGLEGGAQHAVS TLPVGGAAMRRRGSDGLGGGHEDLHLLEVLELGVAAGGHGALQAAHQVGRAVRVAAGPPQ DLLERSHLAHVGAVPARQLRVGGLEAPVPAAAGGVGGAGQGGAQDDRVRAHGDRLDDLPR GGDAAVGDDVHVAAAGLVHVVAARLGDVRDGRGHRHTDAHGAARGGGRAAAEADEHAGRA GAHQVQGRRVAGRPAHDHGHVQLVDELLEVQRLLGGGDVLGRDGGAADDEQVHARRHDGA VELLRVLRGERARDDDAGLADLREALGDQIGADGGRVGLLQLAGGLGPGRAGLEGGDLLE QRARVLVAGPQALEVEDAETAQPPHRDGGLRAHHGVHGRTDHGHVERVGVDAPREADVLG IPGAPRGHHGHVVEGEGPAAALAAADLNLVRHRASLAQAPRGAAPTVSSAPPPSGLPPGP PCGSARTVVRGLDGHHDVVRMGLLQARRGDAHEAAVLLEIGHRGRARVEHRLAQAAHELV DHRGDRAPEGHLALDALGDQLVLVRHVRLEVAVLGEGARAVAGLHGAQGAHAAVGLELLA LVEHEVARGLGRAGQQGAEHHRVGAGHEGLADVTGVLQAAVGDQRDARGACGLGRLVDGG DLRDADAGHHTGRADRARAHAHLHGVRAGVDDRLGARVGRGLTADDVDVRGRLLLLQARD HVQHAVRVAVRGVHHEGVHARLDERHGALPAVAEEADGAADEQAALVVLRGVRVLLRLVE VLDGDQAGQAARIVHERQLLHAVLGEQADRLGARDALLRGDQRHAGHGGVHRAGGPLLAR DEAGVAVGDDAQQRHVLGHHRQARDAVLGAQLVQVGERGVGADGHGVLDHPRLGALHGVH VAGLVLDGQVAVDDAHAALAGHGDGQGSLGHGVHRRGDDGDVQADVAGQPGGRVRVRGDH VRGVGQEQDVVIGEAEEAEGIRGGVDGLGAGTGAGGGHEGAFRDGCFRDSMPGGQTGDPG AGHITGPPCWATRGRDGRHHDVT >gi|289556663|gb|ADCD01000088.1| GENE 75 62390 - 62938 525 182 aa, chain + ## HITS:1 COG:no KEGG:Mlut_16480 NR:ns ## KEGG: Mlut_16480 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 182 1 182 182 333 98.0 1e-90 MSTQHPGPQPVDPASLPDPEDITEADLPEPPPRPGREHRRFAGTQQQIRSATRLYVVCAW ITGIMLLLLVAEMVLKYGMHVELYAGGTTVDGDANGLGLHPTDSVTGGVNLSLFILIAHG WMYVVYLLASFRLWSLMRWEPLRLLAMAGGGVVPFLSFVVEKRMTRVVRDELHRFPDAAR RY >gi|289556663|gb|ADCD01000088.1| GENE 76 63012 - 64580 1438 522 aa, chain + ## HITS:1 COG:Cgl0591_2 KEGG:ns NR:ns ## COG: Cgl0591_2 COG0519 # Protein_GI_number: 19551841 # Func_class: F Nucleotide transport and metabolism # Function: GMP synthase, PP-ATPase domain/subunit # Organism: Corynebacterium glutamicum # 194 522 1 326 326 469 75.0 1e-132 MPTVLVLDFGAQYAQLIARRVREANVYSEVVPASTPAEQILERRPAALILSGGPSSVYEP GAPQLDPALLEAGVPVLGLCYGFQSIAHALGGTVAKTGTREYGSTRLDSVDADSVLFAGQ DLEQVVWMSHGDAVTQAPEGFAVTASTAGAPVAAFEDRERRIYGVQWHPEVGHSSRGQRV LEQFLHVGAGLGSDWTASGVIEEQVERIREQIGDKRAICGLSGGVDSAVAAALVQRAIGD RLTCVYVDHGLMREGESAEIEQAFGEAHGGARLVMVDAREDFLSALAGVTDPEAKRKIIG ERFIRTFEKAQADIVLESEHDPDATEVRFLVQGTLYPDVVESGGGDGAANIKSHHNVGGL PDDIEFELCEPLRELFKDEVRAVGAELGLPEGIVHRQPFPGPGLGIRIIGEVTQERLDLL RRADAIVRAELTAAGLDRQIWQCPVVLLADVRSVGVQGDGRTYGHPVVLRPVTSEDAMTA DWARIPDDVLSRISNRITNEVDGVNRVVLDVTSKPPGTIEWE >gi|289556663|gb|ADCD01000088.1| GENE 77 64679 - 68443 2853 1254 aa, chain + ## HITS:1 COG:TM0618 KEGG:ns NR:ns ## COG: TM0618 COG1112 # Protein_GI_number: 15643384 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases and helicase subunits # Organism: Thermotoga maritima # 637 1238 683 1288 1289 114 22.0 2e-24 MTEQEFPRLARARAAARPDEGQTRPDPAAWVSSLGSGAENDTMLRFAPSAANSIDLTEAN SSGVSQLLLGRRTRLSTLLPAGPVLDAAHEVSLGLRAKVRELAEERGIDVGALAVGVATW TAEEDGRRERRSAPVLLARVALTVRRGARGRDELEVQITEPARLNPALVRNLRRHHGIAL DPEAYQQAAYATARLEPAPAFARLREETAAIADLHVQDCLLVSTFADLGETASLPASLED LPVVQALYDAGTGMVPRPAALQPTGAPAEDDVAPADERLVVDVDAAQARVLEHAAAGESL VVAAAPGTGQTQTAAALAARLAWEGRRVLVVAERSAALADVLDRLEETDLRSIALDVPAN ADPELLRRQLVQAVLRSERAVEPDTARDEAALTERRRRLEEHVGSLHHVRPRWGCSPFQA MQALAALTGLETPPATTVRLKRSVLDSTVNRQAVGEQLVRAGELGAFSAAATESRWFGAR VRNVQETEAASELADELAAALHTTRRAVDTAAAQAGLRPERTVAGWAEQADLYRRVARTL TEFTPEVFSLDVPQLVAATATSSWRRLHLVEMSSVARSRLRRAAKDAVRPGVQPTDLHGA LVDAAAVLEDWNRHAAEPGTPPQVPDQGEHVMGHVGQVREHLRRLEAVLAPEAVAEGPLD ERDVDDLVAAVDGLVADRDTLATLPERTLVLDSLRDHGLAELLEDLRDREVPTEALTAEL ELAWWQSALEAMISGDDFLAMMSGTDLTEVERGFRDLDRAHLERGGARLSAALAARWREA LRTYRADAAVLRTLLKQASPTVESLATITPELLQPLVPVVTTSPMALSEFPPEWRADVVV LLEADATALATAMGALTRAPQVVALGDPVIGRPQSFQVSVDPTATAGPLRPLRSAHDALD EVLPTLPLRTVHRPLERRLVRLLSALAYDGALDALPTAGEATGRDRAVTAEYLPEGTGIP MTGGDVVESTNAEVARTVERVFEHIRDRPEQSLAVVTVSEQHARRVAAAVQATAAQAPWA HEFLARGRGEDAAEAEPFVIVPVVRAASVVRDAVILTPGYGRTPHGRVVHHFGAFSDPDG ERMVTVALTRARRRLHLISALRAADLDEDRLDGGALWFLRLLEAYLGDDAADPVGMVGDP LLADLRDRLEEHGARVLPRHGGVMDLAVLDPRADQDEAPRPLALAGDGGEVYRALTVRQR SRTLPEGLEARGWEPRTLWSIDVFADPESVARELADRLGVEPRDETDETDDDVR >gi|289556663|gb|ADCD01000088.1| GENE 78 68433 - 68672 116 79 aa, chain + ## HITS:1 COG:no KEGG:Mlut_16450 NR:ns ## KEGG: Mlut_16450 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 79 1 79 79 75 93.0 6e-13 MSADGAPRRRGPRRADAPGTGPATADGREPRLPGMPRLTGQAGTSPATAPTGHEAGVESG PAEAERDRWLREQRPPHWG >gi|289556663|gb|ADCD01000088.1| GENE 79 68693 - 68953 236 86 aa, chain - ## HITS:1 COG:MT1020 KEGG:ns NR:ns ## COG: MT1020 COG2331 # Protein_GI_number: 15840416 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Mycobacterium tuberculosis CDC1551 # 1 69 8 76 117 78 56.0 2e-15 MPTYAYRCKDCGHAFDAVQAFTDDALTECPACGGVLRKQYGSVGVSFKGSGFYRTDSRSG TGSAGGSTSDSAAGSSTSSSASAAAD >gi|289556663|gb|ADCD01000088.1| GENE 80 68952 - 70391 1089 479 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239918126|ref|YP_002957684.1| acetyltransferase, ribosomal protein N-acetylase [Micrococcus luteus NCTC 2665] # 272 479 1 208 208 424 94 1e-118 MLSSSSLGARRGARFWGDPTLDATPRRGLGSDPAQPGRGDDAVHGSVRGLGGDGARRQQL VLEHEGHGGHGLRQLGEEAVVVAPALAQAHPVLGHRERRHDHRGRRRQRVGPESFAHGLV HGGVRGARRRGLRVPRSPAEASFRLDHGDEHPRPRGQQAGAQHTGVRLGGHRQHGGHHRG GPARGRRGHARTQPRPQVLDGGRGLGGAARGGAVAAGGAQAGTQGGLGVHDVVDAGDGAR GGGLGHGRGSAHVPMMPAAPEPRPAAHRIDAMSWQRSPWPVTLRHGTLALRPLRRRDREA WEEQRAHNREWLTPWDATSPVPGAGPSSFGQMVRWHGRQGRDGSAYTWGMVLDDDRPDRD RLVGLLSLGGIQYGSLLSGSIGYWVDRREAGRGLTPTAVALATDWAFRGAGLHRVEVNIR PENAASLRVVAKLGLRDEGLRRAYLHVDGAWRDHQTFAVTAEEVPEGLLARWLATRPRP >gi|289556663|gb|ADCD01000088.1| GENE 81 70469 - 71389 699 306 aa, chain + ## HITS:1 COG:no KEGG:Mlut_16410 NR:ns ## KEGG: Mlut_16410 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 305 1 305 306 281 91.0 2e-74 MDETTAPTTAVQAALDALADARVSASLVIVALVAFLAWRLVLRRHRLASAPARPSMPRSF MHRLQSSPAVRALTARLSGRLSAAADAARTARGRTGLHIRWGRTALFLAALVALLVFLVA GLAAAFGAGTLALAGWSLLFAVAGLAGLRALAVRGDRTRRARPAAAVVDPERPAAPAAEE REAPAADPERDRRVLETVLAFETEAPRPAAAPAASRVEPVVVTASSAAAPAADRAVTIPA VPRPTYLDAPEVARPLPAPLETPAPTGADTRLTDAAHTADDQISAAAEQDIAALDLDNVL ARRRAC >gi|289556663|gb|ADCD01000088.1| GENE 82 71541 - 71802 163 87 aa, chain + ## HITS:1 COG:no KEGG:Mlut_16400 NR:ns ## KEGG: Mlut_16400 # Name: not_defined # Def: putative homoserine kinase type II (protein kinase fold) # Organism: M.luteus # Pathway: not_defined # 1 87 44 130 411 122 94.0 5e-27 MTGRAGNARVRSRALVLARDPRHPAAPAAACPPVPGERGILEDGTLWWWAPADPVLPGLT LTGDPDALAALLGTAPGRARLTWRGYR Prediction of potential genes in microbial genomes Time: Thu May 26 08:10:34 2011 Seq name: gi|289556630|gb|ADCD01000089.1| Micrococcus luteus SK58 ctg1119142780295, whole genome shotgun sequence Length of sequence - 36440 bp Number of predicted genes - 29, with homology - 28 Number of transcription units - 17, operones - 8 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 148 - 1530 708 ## Mlut_02200 hypothetical protein 2 2 Tu 1 . + CDS 832 - 2127 1290 ## COG0104 Adenylosuccinate synthase 3 3 Tu 1 . - CDS 2255 - 5281 2065 ## COG0753 Catalase 4 4 Op 1 . + CDS 5144 - 5431 209 ## COG0388 Predicted amidohydrolase 5 4 Op 2 . + CDS 5567 - 6106 506 ## Mlut_02240 hypothetical protein + Term 6146 - 6191 14.1 6 5 Op 1 6/0.000 + CDS 6205 - 11532 1623 ## COG2987 Urocanate hydratase 7 5 Op 2 . + CDS 11562 - 13175 1359 ## COG2986 Histidine ammonia-lyase + Term 13203 - 13265 19.3 8 6 Op 1 4/0.000 - CDS 13279 - 14589 1232 ## COG0477 Permeases of the major facilitator superfamily 9 6 Op 2 . - CDS 14586 - 15299 750 ## COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family 10 7 Tu 1 . + CDS 15351 - 16028 470 ## COG1802 Transcriptional regulators 11 8 Op 1 . - CDS 16069 - 17169 864 ## COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family 12 8 Op 2 3/0.000 - CDS 17185 - 17700 454 ## COG1832 Predicted CoA-binding protein 13 8 Op 3 . - CDS 17704 - 19191 1101 ## COG2873 O-acetylhomoserine sulfhydrylase 14 9 Tu 1 . + CDS 17878 - 21036 642 ## RMDY18_18640 5-enolpyruvylshikimate-3-phosphate synthase 15 10 Op 1 . - CDS 20984 - 21790 606 ## Mlut_02380 predicted membrane protein 16 10 Op 2 . - CDS 21800 - 22588 478 ## COG5006 Predicted permease, DMT superfamily 17 11 Tu 1 . + CDS 22885 - 23763 723 ## COG2375 Siderophore-interacting protein 18 12 Op 1 . + CDS 23902 - 24699 633 ## Mlut_02410 hypothetical protein 19 12 Op 2 . + CDS 24751 - 26040 823 ## COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase 20 13 Tu 1 . - CDS 25989 - 28280 1738 ## COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases 21 14 Tu 1 . + CDS 28279 - 29661 1042 ## COG1960 Acyl-CoA dehydrogenases 22 15 Op 1 21/0.000 - CDS 29756 - 30625 842 ## COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component 23 15 Op 2 17/0.000 - CDS 30622 - 31641 779 ## COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components 24 15 Op 3 . - CDS 31638 - 32486 638 ## COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component 25 15 Op 4 . - CDS 32483 - 32929 79 ## 26 16 Op 1 . + CDS 32928 - 34349 1340 ## COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases 27 16 Op 2 . + CDS 34408 - 35118 592 ## Mlut_02470 hypothetical protein 28 16 Op 3 . + CDS 35115 - 35861 443 ## Mlut_02480 hypothetical protein + Term 35990 - 36024 2.0 29 17 Tu 1 . - CDS 35925 - 36305 392 ## Mlut_02490 hypothetical protein Predicted protein(s) >gi|289556630|gb|ADCD01000089.1| GENE 1 148 - 1530 708 460 aa, chain - ## HITS:1 COG:no KEGG:Mlut_02200 NR:ns ## KEGG: Mlut_02200 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 281 445 4 168 183 233 88.0 1e-59 MVHVQVGGLAALHEHHLALVQGVVEQVHGVHDHGAQAVRVAQEVLGDLVHGHGAAVVELH QQLVLLPQGALDLLAQDRLVEDVLHADAQAGHLVHVGGADAAAGGADRALAQEPLGHLVH GLVVRRHEVGVGGDLQVLARVAAGLEPVDLLEQRLQVHHHAVADHGGRVGREDAGGQELE LELLPVDDDGMAGVVAAVRLDDVVHPPAQQVGGLALALVAPLGSDDRDRWHLHLSSGPRV APFGPIHGRRLLAVRTEAVPPNPTSVTDATLWLRWLHEHRSAPHTALGLHRPGPPPRKGP SVGTWRPWAVLPWALALLALPLIALALRSNFGANGWMTIIYMVFGALPHELFLMLMVGSL FLLPRVNPLDEQRGGIRLGRLLHTLLGVSWGSFALAAILFPDAGDHPDSAATTPVLMDLL GKSTAMDVGSVAGLALAAVSALTGLAVIVVCVVRRIRAVR >gi|289556630|gb|ADCD01000089.1| GENE 2 832 - 2127 1290 431 aa, chain + ## HITS:1 COG:Cgl2708 KEGG:ns NR:ns ## COG: Cgl2708 COG0104 # Protein_GI_number: 19553958 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate synthase # Organism: Corynebacterium glutamicum # 3 431 1 429 430 671 74.0 0 MQMPAIAIVGAQWGDEGKGKATDLLGGRVDYVVKPNGGNNAGHTVVVNGEKFELKLLPAG ILSPNATPVIGNGVVVNLEALFEEIDGLESRGHSCEHLKISANAHLVAPYHQTMDKVTER FLGKRAIGTTGRGIGPAYMDKVARLGIRVQDIFDESILRQKIEGALRQKNELLVKLYNRR AVTVDEIAEYFLGYADRLRPMVVDSVNLLNDALDEGKVVLMEGGQATYLDVDHGTYPFVT SSNPTAGGAAVGAGIGPTRFSRTIGIVKAYTTRVGAGPFPTELFDEMGEQLRTTGGEFGV NTGRPRRTGWYDAVMAHYAARINGFTDYFLTKLDVLTGIEKIPVCVAYEVDGVRHDRMPM TQTEFHHAKPVYEHFDGWTEDISGARAFTDLPLNAQRYVEALEKLSGCRISAIGVGPGRD QVVQVRDLIQD >gi|289556630|gb|ADCD01000089.1| GENE 3 2255 - 5281 2065 1008 aa, chain - ## HITS:1 COG:BS_katB KEGG:ns NR:ns ## COG: BS_katB COG0753 # Protein_GI_number: 16080956 # Func_class: P Inorganic ion transport and metabolism # Function: Catalase # Organism: Bacillus subtilis # 335 999 30 684 686 605 47.0 1e-172 MAHGAVRARVRRGHPHRVLHRAGLEQGAPVVHLVLAGEPRRGDHEHVRALHRQTPGQLGE AQVVAGEQTQAEPAELDRRDAAVAGGDPVRLAMCERVVEVELAVRTQSGAVRAHRQQRVV GTPVRSRLVAARDDGDPVLTRQRGQARGERLPGRGDGVGELLPHLAGPEHGLLGQHQEVR PLARGAGGEAGHHGQVRLDVAPGPELSHADPHAPRVARPPPVAVSPGQRRGQPPRWKPGT TSARIGRRRRPSPDPRGTARHVDTTGADAMTTQQPDIPGTPGPITPDLEEHTALTHPDQP VAVPAPDQRGPAQVSPTGQDTGADPATAAQGCPYLTTAHGVRLQDSDHSLKAGRRGPTLL QDHHLREKLSHFDHERIPERVVHARGAGAHGVFRGYGTAAKISRAGLFAKDKETEVFVRF STVAGSRGSMDLARDTRGFATKFYTDEGTWDLVGNNIPVFFVQDAIKFPDVVHSVKPHPD REIPQAQSAHDTFWDFVSLHTEAQHHTLWNMSDRGIPRSYRMMEGFGVHTYRLIAADGST VLVKFHWKPMLGVHSVTWEEALLTNGMDPDFHRRDLADAIEAGAFPEWELGVQVFEDNEE QMFEGIDLLDPTKLVPEELAPVQPLGRMTLNANPSNYFAETEQVAFNPANLVPGIDVTND PLLQGRLFSYLDTQLTRLGGPNWNQLPINRPHAPVNDMLRDGFHQSAVHRGVAPYRPNSL DGGLPYETPADDHAFIEHPEPLPASVKERAHAASFDDHFSQARLFFLSLSEVEREHVAQA YTFELGKCYEQTIRERQLAHLAAIDTRLAQQVADGLGIPVPAPTETPADVQPSPVLSQIG GAWPLDGRQVGVVVGESVDEKELDALVQGIHGAGMVPLVIAPKGGPVAGEIVAQRTYLTA ASIELDAVVVASPAAPAADAAPSLDQKAGAADSEAVDPRVVKVLQEMWRHSKAILALEPA EAVLAAAQVSGKGVESAADGASAVSRLTELLPAHRVWDRFPTTGRLAD >gi|289556630|gb|ADCD01000089.1| GENE 4 5144 - 5431 209 95 aa, chain + ## HITS:1 COG:TVN1257 KEGG:ns NR:ns ## COG: TVN1257 COG0388 # Protein_GI_number: 13542088 # Func_class: R General function prediction only # Function: Predicted amidohydrolase # Organism: Thermoplasma volcanium # 1 94 166 258 270 84 44.0 7e-17 MLVIPAAWFSGEHKVDHWRTLLKARAVENTVWVAAADTCSDGTVGHSMIVDPLALPVAEL ADEREAVVTAEVTRERIEEVREFLPSLANRRTDVL >gi|289556630|gb|ADCD01000089.1| GENE 5 5567 - 6106 506 179 aa, chain + ## HITS:1 COG:no KEGG:Mlut_02240 NR:ns ## KEGG: Mlut_02240 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 179 1 179 179 242 92.0 4e-63 MTINADGSHAVQPHTANAHTAPTRPVRHAVVEEEVLEPLRPVDGWGFTNRVILVSVLVVI IGDVVRVLTGGLGDPNGSVALGETGHGWVVLVQSFMFGLVGGALAGAAGYLIVLLMGGAA RSVVRYVVGGVVGGFLGAVGLFAVFSNTVLYGSGLHLFWMLPVAGLLGGLWAGVVSSRR >gi|289556630|gb|ADCD01000089.1| GENE 6 6205 - 11532 1623 1775 aa, chain + ## HITS:1 COG:PA5100 KEGG:ns NR:ns ## COG: PA5100 COG2987 # Protein_GI_number: 15600293 # Func_class: E Amino acid transport and metabolism # Function: Urocanate hydratase # Organism: Pseudomonas aeruginosa # 308 591 12 292 559 336 62.0 3e-91 MRWLQPTKSPWAFQGSRLGVPWECRPPRAGARARRWRRRVGRPAPVRQLVRAAVGRHERA ERPDHRARHADGGGQRGDILLHGTGAQRVVPRGHAAAQGVAHGRARQGDGASDPVRVADR VRALHDRQVDGGVRRGRHREVDGFARGGHDVVHRPAGQLHERVPGEGPRPELDEAHAGAV GTVVVAGHEAGPLEAAQQAERRGRRQLRGAGGLGQAQPGLLGDGGEQVQGPVHGARRGGG GGGHDRERNGCGTCGSGLRVSRATVSMFGKCMPSREITGATRPAGACTPSRGTAMAVGFT QHDPSRTIRAPRGTELSAKSWQTEAPLRMLMNNLDPEVAERPEDLVVYGGTGRAARSWEA YDAIVATLKDLEEDETLLVQSGKPVGVVKTNVWAPRVLIANSNLVGDWADWKTFRELEAE GLMMYGQMTAGSWIYIATQGILQGTYETFAAIGRKRYDGSLKGTLTLTGGCGGMGGAQPL AVTLNGGVCLIVDVSEDRLRRRMGKRYLDEVETDIDKAVERVMQAKRDGEAVSVGLVGNT AEVFPELLERQKAGTVEIDIVTDQTSAHDPLSYLPIEIDEKDWHAEAESDPDTFTQEGPG VHGPPGRGHGRLPGHRRRGVRLRQLHPRRGPQGRLLPRVRVPGLRPGLHPPAVLRGPRPV PLGRAVRRPGGRPRDRRGPEGAVPRERAPAPLARRRRRVHGVRGPAGPHLLAGLRRAPQG RPALQPARGRGQGQGADRDRPRPPRLRLRGLPVPRDRVHAGRLRRDRRLAAAQRADRHLL RRHLGLDPPRRRRRHRPLHPRRPGRPGRRHRAGRGQAHRPADQRPRHGRLPPRRLGLLPG RRGRRRARRPCAHGGHDPGLTPVTSSDDDGAAAPSPSDDITAASRTGVRLSGSRSKGHHD GLVPPRRPRAAHRHHRDGRDRGRRAPTAGALAHDRLLGDRHRHVLRARHDQRGELHPPGP PGDLGARAARPGRPLGGPGHHRRRRRVPVRLGPLADQHHADGLRVPRRARPGRLGDGRVR RGPELDPGREHRPVPDGQARGARGPDRPRRRRLPGPRDRLRPHGVRGRLPAPGHAADLAR ARPRRRRRRRLLRGLLRPGPAADEPHVHRRPLHGPRGGDHRRRLLHGVRDLHGDRRQDAG PDGHLALVLLRHPRGDVRGHGHHRAHPAAEPHPGRGVPRRGALARAGRHPGPLPRGPSRR RADPRRGPVPAEEHLGQLPGRPRDGAPDPALHHVRGPDRPGPGHVHARVRVDRRDLLPAV LGARLLRPRPAGLGLRHLDRRDVHPGHDGGRSRGPRRPVRDRRRLRLRDHLLLRGGSCHP GHGHPREDVAPPGDLGRARGAHHRAGHAAGPPGGRAHLRPTPPTHPRPSRREAPMRSTLI TDIAELTTVDPEGRVLTDAAVVVEDDRIAWIGPAADAPDADDRVSVEGRAVLPGWVDSHT HLVFDGDRSAEFEARMAGESYAAGGIGVTTSATRAASDDRLAELVRGRVADAVAGGTTYL ETKTGYGLTVEEEARHARLLAGLREEGLVDEVTFLGAHLVPPGRDAEDYLDDVVGPMLEA VREHAGWVDVFCDTGAFDAEQTRRVLAAGVAAGLGVRLHGNQIEQGPGVGVAVEFGAASV DHVNHLSDADVEALAGTWTGWDRASATGTPGTVAGCLPACDLSTRAPLAPARRLLDAGIE VSLASNCNPGTSYTTSMNFNVGTAVLQMHLTLAEAVRAATLGGALGLRAQDRVGSLEVGK RADLHVLDAPAAIHLAYRPGMPLTHAVWRAGRRAV >gi|289556630|gb|ADCD01000089.1| GENE 7 11562 - 13175 1359 537 aa, chain + ## HITS:1 COG:FN1406 KEGG:ns NR:ns ## COG: FN1406 COG2986 # Protein_GI_number: 19704738 # Func_class: E Amino acid transport and metabolism # Function: Histidine ammonia-lyase # Organism: Fusobacterium nucleatum # 8 477 5 472 511 374 43.0 1e-103 MTTPPVTVTLGTSGATLDDVVAVARHDARVVLADDVLETVGAVRRHVEALAEAETPTYGV STGFGALADKHIPLESRAQLQKSLIRSHAAGMGPVVEREVVRALMFLRATTLASGRTGVR PVVVETFVAMLNAGITPAVREFGSLGCSGDLAPLSHVALALMGEGDVVGADGALRPAGEA LAEAGIEPVELREKEGLALVNGTEGMLGMLIMALADLEELADTVDLTAAMSVEALLGTDR VFVPELHLPLRPHPGQATSADRMLRILAGSPIVASHKEGDSRVQDAYSLRCAPQVAGGLR DTLAYVRTVAERELAATVDNPVVLDDGRVSSNGNFHGAPVAYVLDFLAIPVADVASMSER RTDRMLDPARSHGLPAFLVDDPGVDSGMMIAQYTQAGLVSDMKRLAVPASVDSIPSSAMQ EDHVSMGWHAARKLRSAVENFRRVLAVELVAAARAIELRAPLQPSAATGAAVRVIREAGV PGPGPDQYMAPQLAAAEQALRDGSVLAAVAEALAGVSADAEPQDLAEESEGAEAEGH >gi|289556630|gb|ADCD01000089.1| GENE 8 13279 - 14589 1232 436 aa, chain - ## HITS:1 COG:PA5530 KEGG:ns NR:ns ## COG: PA5530 COG0477 # Protein_GI_number: 15600723 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Pseudomonas aeruginosa # 17 430 11 427 435 270 39.0 5e-72 MSTAATGAARPAPVPGARPRSLKDMLAVNFGNALEWYDWNVYTIFAPVFAAQIFHADNPT SELLATLAVFAVGFVARPIGGYVFGAYADRVGRKRSLFAAMMITALGSLIIAFTPTYGTV GVLASVILVIARLLQGLAHGGEMGTSVTYLVERAPQGRRGLFGATSWVSVVVGTILATLV GLAINTLLSPEQVASWGWRVAFGIGGVLGLYALYLRRSLTESEHFTAAQQVVPTADDAPR REPGAVWRGLLTIFLVSAGGSLMFYTWLIYLPTHAQVAHQMDKSTTLSASLVAQVIFLVA ILGAGLLGDRVGRRPLVIAFGLLFVVLPFPLFGMLDGTFASFLLVQTIALLAVALLFGVN GAVWSEVLPTAVRAKGVATMLSLATAIFGGTAPYLITWLTAQGWTSAFPIYLMVVGGLTG LTGLFMKETKDVDLAA >gi|289556630|gb|ADCD01000089.1| GENE 9 14586 - 15299 750 237 aa, chain - ## HITS:1 COG:SA2448 KEGG:ns NR:ns ## COG: SA2448 COG1853 # Protein_GI_number: 15928241 # Func_class: R General function prediction only # Function: Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family # Organism: Staphylococcus aureus N315 # 18 236 1 220 230 251 59.0 9e-67 MRRSVAPILLPASHGGLMKYRPQHEATPLPYSPFKSSTVPRPIGWLSSVSTDGMENIAPY SQWQNLTFDPPMVMFSANQYPDGRRKDTVLNAEQTGWFVWNMATYDLREAVNVSAMALEP GESEWDRIAEHGVTKVYADNHPIPMVAESPVRFECRYHSTHRIKGDSNVGTIDVVFAHVD TIHIDDDVITADGRLDIPRIQPIARLGYFDYTVVRETFEMRVPGADGDAQAGLEGRA >gi|289556630|gb|ADCD01000089.1| GENE 10 15351 - 16028 470 225 aa, chain + ## HITS:1 COG:BMEI0254 KEGG:ns NR:ns ## COG: BMEI0254 COG1802 # Protein_GI_number: 17986538 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Brucella melitensis # 4 155 31 185 231 66 33.0 4e-11 MNKSEEAYARLTQKIETGELPPGAVLSEAALIDAAETGRTPLREAVQRLIRDHWLLAGGG RGLQVPAISVDDQLERLEVRRSLEALAVGLACARADEEQLAVVADHVRHLRTVEDLPAYV AAVGRSHELLRTIAKNRYLADSLVPLQGLCRRFWLATTKGLPDEVERGRAFYVPALEAVT RRDSAGARAGVLALHDFLARSALDYAARRAAHGSAEPPAPWAEGR >gi|289556630|gb|ADCD01000089.1| GENE 11 16069 - 17169 864 366 aa, chain - ## HITS:1 COG:PA3175 KEGG:ns NR:ns ## COG: PA3175 COG0010 # Protein_GI_number: 15598371 # Func_class: E Amino acid transport and metabolism # Function: Arginase/agmatinase/formimionoglutamate hydrolase, arginase family # Organism: Pseudomonas aeruginosa # 26 356 3 311 311 228 45.0 2e-59 MSGVVRPSLRTRPSMAWDGPMTSELPSPSPAWTGRTDGDAPEHLRWHQVVRPADGRGEPT TTQRHPGAGAPTSGARSTALVGFASDEGVRRNHGRVGAEDGPEALRGALASLAYLEGTGA LVDTGDVSVDRGDDDAPGELEAGQAELGTVVSGLLNAHDLAVVLGGGHETAYASITGLTG STRVGAGTRVGILNLDAHFDLREAPRPSSGTPFLQALRDAEGAEHQLSYAVVGISEANNT RALFDTARERGVTWVTDEQAQTADVTGVRRWVRSFINAVDVLYLTIDLDVLPAAVAPGVS APAGFGVPYEVIHACALEATQSGKLALADVVELNPALDVDGRTAKAAARLIHTIVSRHRT DASLLA >gi|289556630|gb|ADCD01000089.1| GENE 12 17185 - 17700 454 171 aa, chain - ## HITS:1 COG:YPO1443 KEGG:ns NR:ns ## COG: YPO1443 COG1832 # Protein_GI_number: 16121721 # Func_class: R General function prediction only # Function: Predicted CoA-binding protein # Organism: Yersinia pestis # 21 148 9 133 138 116 50.0 2e-26 MSTTHPERTWTGPGAPERLAILRRTRSIAIVGASDKPARASYFVATYLLSSTTYDVYFVN PVLAAAGKEILGHRVYASLDDLPVTPDLVEVFRKSSDAPEVVADAARVGARTVWLQLGIW NEDAARQAEAAGLEIVMDRCVKIEHARFHGGLNLAGFVTGVISSRRQELDR >gi|289556630|gb|ADCD01000089.1| GENE 13 17704 - 19191 1101 495 aa, chain - ## HITS:1 COG:lin0604 KEGG:ns NR:ns ## COG: lin0604 COG2873 # Protein_GI_number: 16799679 # Func_class: E Amino acid transport and metabolism # Function: O-acetylhomoserine sulfhydrylase # Organism: Listeria innocua # 43 478 3 424 425 433 49.0 1e-121 MHATGRPRVTLCDVPTLPSAHLARDNGTDCPEASIERTPVADHEFGFRTQALHAGAVPDA VHGSRAVPIHQTSSFVFESAEDAANLFALQKYGNIYSRIGNPTVAAFEERVATLEGGIGA VATASGMAAEFVTFAALAGAGDHIVASSKLYGGTITQLDVSLRRFGVETTFVDSAEAADF EAALQPNTKAVYTEIVANPSGDVVDLPGLADVAHRHGVPLVVDATLTPPYLIRPIEHGAD IVIHSATKFLGGQGTTLGGVVVESGRFPWDNGKFPSMTEPVPSYGGVSWWGNFGEYGFLT KLRSEQLRDFGPSLAPQSAFQLLLGVETLAPRLDAHLANARAVATWLDEDPRVSWVRYAG LPDHPHHARAQQLLPRGVGSVFSFGVAPAATDTDDGASGPEAGRATASRFISALQLASHL ANIGDAKTLVLHPATTTHQQLTAEQLVAAGIPADLIRISVGIEDVEDILWDLDQALTEAT GRTRDGAVVPAEQEA >gi|289556630|gb|ADCD01000089.1| GENE 14 17878 - 21036 642 1052 aa, chain + ## HITS:1 COG:no KEGG:RMDY18_18640 NR:ns ## KEGG: RMDY18_18640 # Name: not_defined # Def: 5-enolpyruvylshikimate-3-phosphate synthase # Organism: R.mucilaginosa # Pathway: not_defined # 4 364 163 514 514 256 52.0 4e-66 MGRRGGVQHQRLRVADVGQVGGQLQRGDEARRRRAPGLRTGGAVVGVRGRRGHAEAEHRA DAPGQQLLRAGVVRVVGQAGVADPGDARVLVQPGGDGAGVGEVGVQARGQRLDAEQQLER RLRGQRRAEVAQLLRAELGEEAVLAEVAPPGDAAVRGHRLGHGRELAVVPREAAGLHHDA AERGALPAEELRGRMDDDVRAVLDRPDQVGRGEGRVHDERDAVPVGDVGQAGQVHDVTGG VGDDLRVDRLRVGLEGGLEVRGLGGVHERGLDAEPAQGDVQLGDRAAVELRGRHDVVAGP GEGREGDELGGHAGRRRDGPDPALQRGDPLLERGDRGIADPRVDVAVLLQREEVGGVLGG LEHEGAGLVDRHRAGAVDGVRDGARVQRLGAEAELVVSHGGPFDGGFGTVRPIVPGEVRR GQGGDVAERHAGPAGGMQRGLSYHRLRGPGPVTSQPALAWTRDTSTRVGTGGGGSARVGE LMPDQPHDPPEPRALVLPGAAQGRPSPLEAVRVPTGVPRLLLSRAVAGAVVLEGQANRPV PEVHDRRGRVGRVDGDLQLRLRQPGPDQREPEEGLGRGVGPDAHLRQRGTCETDARPATA AGEHLRQPGHGGLGIRPARRRPRRTHQVVAGRDEPVHLVGAEHPGEVEPGARRRRDALAV GKVEHVVGGQPHPVADDAAQVGPVRARGPVEGQVQSGRPREAGRQRQSVPEGGRDVGDHP AREADQRGRALRGAQVGDTRGVHAAADPGEVCREGPAPRQAGGVQLGRREGARGEGGRQG RARGHGASLPPPGPATSRTDAPWGGPPSSWWLCRSGRPAGHGGPGTTRVELSRVQAAWTR DNSTRVAGSGRPVGHGVRSTGTSSTSSSRPSRTTARMRVHSGCRRRSVQEPGLSRRRPGF AVSGPATVSHGMWLCPNTSTSASGNAAAMRRSRPAAGPVSWTIAIRTPPISTRATSGSRA RSRGPSLLPHTPTSRAARASRSSSTSSATQSPAWSTTSARTTSARTCAGRARARRGMWVS AIRSRRTATSSGTVRLTARRTRRARAPAAGRR >gi|289556630|gb|ADCD01000089.1| GENE 15 20984 - 21790 606 268 aa, chain - ## HITS:1 COG:no KEGG:Mlut_02380 NR:ns ## KEGG: Mlut_02380 # Name: not_defined # Def: predicted membrane protein # Organism: M.luteus # Pathway: not_defined # 1 268 1 268 268 394 93.0 1e-108 MPHPSRPTPDDVPAAERAALSRGRLRPWLPFLLATVLCLALLGWALVALPGLPVRVPTHW GVDGRPDAWEDASFGTVATGPLIGLGMTGFLALVSAMVTALTPTDPGLSPWRRVRQAGVH RGFQECLGWSCVLIVLVLAPTTVEVLAAGAWTMPWWVLPLTLTVLMVGIFPAMRAGTQRW TRWSDRVAAELGYRPTAAELAEDEVWTPLGLKRDPDDPAVFPAKRPGYGVGVTVNLATPA GRWLVRGFVAVFIVGLPLALWLGAFAAR >gi|289556630|gb|ADCD01000089.1| GENE 16 21800 - 22588 478 262 aa, chain - ## HITS:1 COG:Cgl0589 KEGG:ns NR:ns ## COG: Cgl0589 COG5006 # Protein_GI_number: 19551839 # Func_class: R General function prediction only # Function: Predicted permease, DMT superfamily # Organism: Corynebacterium glutamicum # 1 249 37 276 301 117 36.0 2e-26 MVALRVVFSAAVLLLVTRPSRAALAGLGPRGWAAVVGLGAAMTGMNLTIYEAFVRIPQGV AVTFEVLGPLALSVAARPSWRSAAWAALALAGIGVLGREGFSAGGGIGGAGLDPVGVALA LAAAACWAGYILLSRRAGTHLPGVQGLALATAAGSLVALPVGVATAGAALLSPVVLGVGL AVALLSTAVPYGIDLQVLRRMPTALFSLLTCLSPIAAALTAWAVRGQELTPLDLAGMLLV IAACAAAVWTGRSPGVAGGGRG >gi|289556630|gb|ADCD01000089.1| GENE 17 22885 - 23763 723 292 aa, chain + ## HITS:1 COG:MT2963 KEGG:ns NR:ns ## COG: MT2963 COG2375 # Protein_GI_number: 15842438 # Func_class: P Inorganic ion transport and metabolism # Function: Siderophore-interacting protein # Organism: Mycobacterium tuberculosis CDC1551 # 2 281 41 314 321 175 44.0 7e-44 MARPQTVLTVVAARRLTPHLVRLTLGGEQFDAVHARWVEKGATDQYVKLLFADPALGLEP PYDLDALRERLAPEQLPVRRTYTVRRMDAAARTMDVDFVVHGVDDDGGTPGHDGGLAGTW AASEPVGQQVAFLGPGGAYRPDATADWHLLAGDEAALPAIAAALEDLAATDAAAAGVALI EVTDARDEVPLTAPAGVEVRWLHRGGPFTPETTRFAAAVEDAAWRDGRVHAFVHGEREQV KRVRAYLTDVRGVDRRQLSVSAYWAYGRAEDVFQAEKQTPAGQIFEDGTTGG >gi|289556630|gb|ADCD01000089.1| GENE 18 23902 - 24699 633 265 aa, chain + ## HITS:1 COG:no KEGG:Mlut_02410 NR:ns ## KEGG: Mlut_02410 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 265 1 265 265 402 96.0 1e-111 MKTPARLAVGMLAASGLLLTGCASDPTLDESWPEVRQKVVDAESLRLRMEGTAADKEEDK DDASASASPSASLGTDAIQSANVDLAGATDDSHLQGTMNMDMGAATMDIEVLRRDADVFF KLKADGDDLPREMGMFSTLVGDRWIKTSADQAAQMDISLEEIMSDLEEDMPAADAFDGKD LKAEEVELEGRKYLKYALPEEHHEFGRTMLIDPESTTLYRLEDVNSEDEDVDANATFTEW NAVEAPEAPASEDVFDLAELQELAG >gi|289556630|gb|ADCD01000089.1| GENE 19 24751 - 26040 823 429 aa, chain + ## HITS:1 COG:SMc02256 KEGG:ns NR:ns ## COG: SMc02256 COG1473 # Protein_GI_number: 15964313 # Func_class: R General function prediction only # Function: Metal-dependent amidase/aminoacylase/carboxypeptidase # Organism: Sinorhizobium meliloti # 24 420 13 382 389 222 38.0 9e-58 MDRTAPTPPANALAPDLPEDIAREAIAFRRLLHGHPELDLHLPRTQAAVLERLEALRAEA GEDAATGRPALETGVGRALSSVVVVLRGGAPLPEGVRRPVVLLRGDMDALPVTEESGLEY APAVPGTMHACGHDLHTAGLYGALAWLVRRRGELTADVVAMFQPGEETGGGALHMIQEGL LEAAGRPVDAAYAIHVSSGTYPRGVLLSRPGAIQAGCDDLVVTVHGRGGHGSVPHLAQDP VPVAAEMVLALQSVVTRQFDAFDPVVATVGHLSAGTAANIIPDSATLALTLRTFSAPARA RLLSAVERMVHGIAAAHGMSAQVRTDCAFPVTANDGDAVAFVRGLVEDLYGADAYRELPE PEPGSEDFSEVLQRVPGAYVLLGAVPEGVDPDEAPVNHSPKAVFDDAVVPRAAQVLAELA LRTAPVPAS >gi|289556630|gb|ADCD01000089.1| GENE 20 25989 - 28280 1738 763 aa, chain - ## HITS:1 COG:MT3768 KEGG:ns NR:ns ## COG: MT3768 COG0365 # Protein_GI_number: 15843284 # Func_class: I Lipid transport and metabolism # Function: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases # Organism: Mycobacterium tuberculosis CDC1551 # 101 728 32 638 651 616 53.0 1e-176 MTAGDDGGRGAVVGVPTLVGPADQEEPPPMTPTEDPARTDPAEEGASGAVRGPNDGVPAA ALATLPGPLPQALVDAADPDVHPGRPADRLHGGRGDGRPVAEADRLAFWEAAGRRLSWER PFTRTRSLTAPDPAAERGPEIRWYEDGTLNVAVNCVDRHVAAGRGEKVALYFEGEPGDRR AVTYAQLQREVARAANALEELGIEAGDRVVVYLPVLVETIVITLACARIGAVHSLVFGGF SAEALRFRVEDTGAKLLVTTDGQFRRGTAVPVKANADEAVSGDNAIEHVLVLDRTGHRDI PWTEGRDLWWHDVVDRQPDTHTPRAFDAEHPLFIMYTSGTTGQPKGLVHTSGGYLAAASW THDFLFSHPDPARRDDDVHWCTADLAWVTAHTYEIYGPLSNGVTQVIYEGVPNAPHPGRH FEVIERYRVTSYYTAPTLIRSLKGWHPDGIPAHADGGPDLSSIRLIGTVGEAVNPEAWTW ARTQIGRDTPDLPMVDTWWQSETGATVLSPRPTDTAFKPGCGSRPLPGVDVAVVDDDGAP TPEGLQGRIVVTRTSPSMARTVWRNPARYFHSYWEDYADQGEAGWFLAGDGAKRDEDGDV WILGRVDDVINISGHRLSTIEIESALVAHPEVIEAGVCPVPHETTGHAAVAFVVAHESWL AGDDGPGASAADRAEELRRHVGRVIGPVAKPAEVVFVPDVPKTRSGKIMRRLLTQLQQGT ALGDTTSLQNEPCVGQIAEVLRAGRRAQDAGTGAVRSASSAST >gi|289556630|gb|ADCD01000089.1| GENE 21 28279 - 29661 1042 460 aa, chain + ## HITS:1 COG:PA2324 KEGG:ns NR:ns ## COG: PA2324 COG1960 # Protein_GI_number: 15597520 # Func_class: I Lipid transport and metabolism # Function: Acyl-CoA dehydrogenases # Organism: Pseudomonas aeruginosa # 46 457 20 414 419 214 36.0 4e-55 MLGPPGPRGRPARARATAAGVDPVPRPGRPGPLAARACQSRSMTTYATLAARYADAFDSV AHGERAREAGRHLPFAALGELQAAGFGKVGVPEDAGGEGGGSETVLRLLMDLAARDVNTA HVWRSHLVFIATAMDQAPARRERWLRHIVAGDWAGSALAERAGGAAPGRAATLASRDEGG TWVVRGQKYYATGSAFATWTAATVGIEGADLVSRRNSKRAGGAVREPDRAVAVVRVRQPR VGIKDDWDGFGQRLTATGSVVLDDAAAEELLEVPRQDGPVPVLMEATLLALQAGIGRAAL TEGTQLLRKRRRTFNTGTAALPKDDPQLLEIMGQLAGRQAAAELMVREVGRLLDEGEDGA HGAGPAEADVAAASAEAMAAAYRAQAVVPEAVLEVCTRIFDTLGASATSATLRLDRHWRN ARTLATHDPAAFKVRMAGDWLVNGTPPTAYTSAGEVPEGD >gi|289556630|gb|ADCD01000089.1| GENE 22 29756 - 30625 842 289 aa, chain - ## HITS:1 COG:PA3448 KEGG:ns NR:ns ## COG: PA3448 COG0600 # Protein_GI_number: 15598644 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type nitrate/sulfonate/bicarbonate transport system, permease component # Organism: Pseudomonas aeruginosa # 30 286 13 263 274 186 50.0 4e-47 MSTAPTTPAATTGPEARDRSDRRDDGGTGARRRQRPRVLDRPGARAVVGLAAPAVLLVLW WAVTAAGLLSAVQLPSPGAVLSAGVNLLERGDLWLHVGISTQRVLLGFLLGAALGLAVGS ALGLSRWADALFAPLIGALRAVPSLAWVPLLILWMQIGEESKVTLIAIGAFFPVFTTVYA ALRHVDPHLVEAGRAFGYHGLSLLRTVQLPAVVPAVFSGLRLALAQAWLFLVAAELIASS MGLGFLLTDSQNNGRTDRLILAIILLAVLGKLTDWLLGLLERRALRRWA >gi|289556630|gb|ADCD01000089.1| GENE 23 30622 - 31641 779 339 aa, chain - ## HITS:1 COG:PA3449 KEGG:ns NR:ns ## COG: PA3449 COG0715 # Protein_GI_number: 15598645 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components # Organism: Pseudomonas aeruginosa # 46 326 32 315 333 240 48.0 3e-63 MSGAGSARLTRRTALSLLAASLPLGLSGCVLQGEAGAGPVNGPDTLSIDYATYNPLSLVI RHQGWLEETLAPRGVRVNWVFSAGSNKANELLRSNSVDIGSTAGSAALLNRANGAPTRIV GIASRPEWSALMVPPGSDITDVTQLAGRTVAATRGTDPYFFAVQALEAAGVDPADVEIQN LQHADGRAALAGGSVAAWSGLDPIMAKAEAEGARFLYRDLALNTFSVLNATESFLEEDPE TAQTVLDTYERARAWALEHPVETVGILAEAAKISPDVARTVILERTNADVSPVPGQELLD ALTGVGRILVDTGSVDYQHQVDAALASILDTRFAEEATR >gi|289556630|gb|ADCD01000089.1| GENE 24 31638 - 32486 638 282 aa, chain - ## HITS:1 COG:AGpT117 KEGG:ns NR:ns ## COG: AGpT117 COG1116 # Protein_GI_number: 16119872 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 25 271 22 258 267 191 48.0 1e-48 MSVHAPSRATASTPVRDEDRHSLDVVFRGVGRTFPTADGPRVVLRDVDLTVAPGEVLAVI GASGCGKSTLLRAVAGLDPDFDGELLIDGSPVRPYDERTAVGFQEPRLLPWRTLRRNVEL GLPRGLDRAAGRDRVQELLELVGLAPFAEHRPREVSGGMAQRASLARALARRPGVLLLDE PFGALDALTRLKMQDLLLDVHAATGTTALLITHDVEEALQLADRVLLLSRDVPVPDGVAR PGATVGRIVDVPGARPRDRADTRLARLRSELLEGLGVESHAR >gi|289556630|gb|ADCD01000089.1| GENE 25 32483 - 32929 79 148 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGLLSRAARSQGHGRAGDGSAPCNADAAGGGSRSGPGVHDGPAGPGHASGARFVTCPDVT EDTSAGGGPVAARRHPSAEPEKSAASTLRRRPKRLARRWPRRPRCDARAALRRRRRGRLA ADRARGGLLASVSVRRRHRRRSDDGSPP >gi|289556630|gb|ADCD01000089.1| GENE 26 32928 - 34349 1340 473 aa, chain + ## HITS:1 COG:Cgl0986 KEGG:ns NR:ns ## COG: Cgl0986 COG2141 # Protein_GI_number: 19552236 # Func_class: C Energy production and conversion # Function: Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases # Organism: Corynebacterium glutamicum # 1 473 1 465 487 650 69.0 0 MSTAENAGAGAPTRPDEHREILFNAFDMNCVAHQSPGLWRHPDDHARDYNTLGYWTHLAQ TLEKGLFDGLFIADVLGPYSVYGGTSEAAIRTGAQTPVNDPFLLVSAMAAVTEHLGFGVT AGTAYEHPYPFARRLATLDHLTGGRVGWNVVTGYLPSAAQNMGQDDQMEHDERYEHADEY LDVVYKLLEGSWEDDAVVYDKESGVFADPAKVHDIAHEGTWFKVPGHAVTEPSVQRTPVI YQAGASTRGRAFAGKHAEAVFINSPTKELAAATVKKIRQALVDAGRDPYDVKIFAMQTIV TGATDEDARAKYDDLAQYVDPLGGLVLMSGWMGIDLSQYDLDEPIGDVKSNAIQSAVETF QKASGTDEEWTVRKLAEWVGIGGFGPVIVGGGESAARQLVEWADETDVDGFNLAYHITPG TFEDIVEFVVPELQKLGRYKTAYTDGTLRHKLFGRGDHLPQNHHGASFALRRR >gi|289556630|gb|ADCD01000089.1| GENE 27 34408 - 35118 592 236 aa, chain + ## HITS:1 COG:no KEGG:Mlut_02470 NR:ns ## KEGG: Mlut_02470 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 236 17 252 252 389 97.0 1e-107 MQRRRAVRAAGLGVVGALALAGCASEPQSAGEAWHQARTQLDEAETVRLETAYTTGRQGP QSVRWDIAGRLDGGDAESKGVMQVGRDSHITMESRQVGEDVFVRVDVDGSDVPDDVQMMY SDPQWRRVSAGEGQEPPLKSLLDQVGLPAADALDGAEVRAEEVDWDGGTAYRYAVPEEVA DAAMAEGDATRVHSFTVDDDGELVALTVDDGRATQQYALSDWNQIEPAEAPEEVAE >gi|289556630|gb|ADCD01000089.1| GENE 28 35115 - 35861 443 248 aa, chain + ## HITS:1 COG:no KEGG:Mlut_02480 NR:ns ## KEGG: Mlut_02480 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 28 248 28 248 248 356 97.0 4e-97 MRQRQTQTRRTRRGLSLAAVGAAALLLTGCASGDDAPGAWDRARTQLEEADSVRMVTELR SEAPSNGRAVPDSVDISGPVDGSSMRYVSVYQDDGLITRDESRIVDGTAYSRFTVERAGA SGEDRPAYVERWTATPYEGDPSATGMGAMVSSLLGSLPESGGLDDVEADADGIRRSGQDA IRYVLDEPVSGPQEGVELTAFTVSKEDGRLLTVETESAGTKAVVTLSETGEVDPVQAPPA DEVLKQDG >gi|289556630|gb|ADCD01000089.1| GENE 29 35925 - 36305 392 126 aa, chain - ## HITS:1 COG:no KEGG:Mlut_02490 NR:ns ## KEGG: Mlut_02490 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 126 1 126 126 200 98.0 1e-50 MRLITLGLGAALGYLLGSAEGRKNLEKMTQNAQKLWNDPKTQEKVGQVQETAQQKFAEVK KSDPVQKATTKVEDAMQGNDKKNDVRDDRVTESNNDNITSAARHGAEPDTVSDPSTPLGD EGPLTR Prediction of potential genes in microbial genomes Time: Thu May 26 08:11:54 2011 Seq name: gi|289556567|gb|ADCD01000090.1| Micrococcus luteus SK58 ctg1119142780321, whole genome shotgun sequence Length of sequence - 69200 bp Number of predicted genes - 65, with homology - 55 Number of transcription units - 45, operones - 12 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 24/0.000 - CDS 3 - 465 292 ## COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes 2 1 Op 2 28/0.000 - CDS 462 - 1517 977 ## COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit 3 1 Op 3 . - CDS 1526 - 2599 925 ## COG1071 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit 4 2 Op 1 . - CDS 2837 - 3436 632 ## Mlut_06790 hypothetical protein 5 2 Op 2 7/0.000 - CDS 3486 - 4322 709 ## COG0575 CDP-diglyceride synthetase 6 2 Op 3 33/0.000 - CDS 4348 - 4869 571 ## COG0233 Ribosome recycling factor 7 2 Op 4 24/0.000 - CDS 4959 - 5726 819 ## COG0528 Uridylate kinase 8 2 Op 5 38/0.000 - CDS 5933 - 6769 505 ## PROTEIN SUPPORTED gi|42631241|ref|ZP_00156779.1| COG0264: Translation elongation factor Ts 9 2 Op 6 . - CDS 6873 - 7721 1417 ## PROTEIN SUPPORTED gi|239917202|ref|YP_002956760.1| SSU ribosomal protein S2P 10 3 Tu 1 . + CDS 8126 - 8800 199 ## COG0739 Membrane proteins related to metalloendopeptidases 11 4 Tu 1 . - CDS 8736 - 10196 952 ## COG0438 Glycosyltransferase + Prom 10027 - 10086 1.9 12 5 Tu 1 . + CDS 10217 - 11128 802 ## COG0791 Cell wall-associated hydrolases (invasion-associated proteins) + Term 11144 - 11194 18.3 - TRNA 11187 - 11263 84.2 # Met CAT 0 0 13 6 Tu 1 . - CDS 11310 - 12380 920 ## COG0438 Glycosyltransferase 14 7 Tu 1 . - CDS 12655 - 13296 180 ## PROTEIN SUPPORTED gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase 15 8 Tu 1 . - CDS 13448 - 14371 850 ## Mlut_06670 protein of unknown function (DUF1469) - Term 14438 - 14484 15.0 16 9 Tu 1 . - CDS 14503 - 15336 796 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase 17 10 Op 1 . + CDS 15369 - 17531 1014 ## 18 10 Op 2 . + CDS 17573 - 18202 558 ## COG1801 Uncharacterized conserved protein 19 11 Op 1 . + CDS 18407 - 19252 730 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) 20 11 Op 2 . + CDS 19312 - 19842 178 ## 21 11 Op 3 . + CDS 19926 - 20486 249 ## CMS_0510 putative integral membrane protein 22 12 Tu 1 . + CDS 21245 - 21583 270 ## KRH_00550 hypothetical protein - Term 21539 - 21575 -0.5 23 13 Tu 1 . - CDS 21644 - 24226 1059 ## COG0178 Excinuclease ATPase subunit 24 14 Tu 1 . + CDS 23660 - 24727 335 ## gi|289706674|ref|ZP_06503022.1| conserved hypothetical protein 25 15 Tu 1 . + CDS 24887 - 26497 1421 ## COG0578 Glycerol-3-phosphate dehydrogenase 26 16 Tu 1 . - CDS 26578 - 28551 707 ## 27 17 Tu 1 . + CDS 27475 - 29007 1379 ## COG0554 Glycerol kinase 28 18 Tu 1 . - CDS 29199 - 29411 79 ## Mlut_23060 hypothetical protein 29 19 Tu 1 . + CDS 29304 - 30122 383 ## 30 20 Tu 1 . - CDS 29781 - 30563 577 ## Mlut_23080 hypothetical protein - Term 30576 - 30617 -0.7 31 21 Tu 1 2/0.100 - CDS 30779 - 34204 2642 ## COG4096 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases 32 22 Op 1 27/0.000 - CDS 34259 - 35041 447 ## COG0732 Restriction endonuclease S subunits - Term 35065 - 35120 3.7 33 22 Op 2 . - CDS 35338 - 37080 931 ## COG0286 Type I restriction-modification system methyltransferase subunit 34 23 Op 1 . + CDS 36910 - 38058 584 ## COG2856 Predicted Zn peptidase 35 23 Op 2 . + CDS 38055 - 38558 194 ## Sked_03120 hypothetical protein - Term 38551 - 38604 5.2 36 24 Tu 1 . - CDS 38670 - 39956 1045 ## COG0305 Replicative DNA helicase 37 25 Tu 1 . + CDS 39423 - 40412 76 ## 38 26 Op 1 8/0.000 + CDS 40795 - 41970 994 ## COG1804 Predicted acyl-CoA transferases/carnitine dehydratase 39 26 Op 2 . + CDS 41996 - 43222 1313 ## COG1960 Acyl-CoA dehydrogenases - Term 43111 - 43160 4.6 40 27 Tu 1 . - CDS 43238 - 44893 2048 ## PROTEIN SUPPORTED gi|239918777|ref|YP_002958335.1| SSU ribosomal protein S6P modification protein 41 28 Op 1 . + CDS 44579 - 45031 332 ## PROTEIN SUPPORTED gi|225088897|ref|YP_002660164.1| ribosomal protein S6 modification protein, C terminal domain 42 28 Op 2 . + CDS 45028 - 46143 879 ## COG3608 Predicted deacylase 43 29 Tu 1 . - CDS 46184 - 47407 1031 ## COG0477 Permeases of the major facilitator superfamily 44 30 Op 1 27/0.000 - CDS 47511 - 47972 732 ## PROTEIN SUPPORTED gi|239918782|ref|YP_002958340.1| LSU ribosomal protein L9P 45 30 Op 2 . - CDS 48001 - 48240 387 ## PROTEIN SUPPORTED gi|239918783|ref|YP_002958341.1| SSU ribosomal protein S18P 46 31 Tu 1 . + CDS 48366 - 50114 640 ## 47 32 Tu 1 . - CDS 49203 - 49508 505 ## PROTEIN SUPPORTED gi|239918785|ref|YP_002958343.1| SSU ribosomal protein S6P 48 33 Tu 1 . + CDS 49768 - 50412 259 ## gi|289706696|ref|ZP_06503044.1| hypothetical protein HMPREF0569_1484 49 34 Tu 1 . - CDS 50482 - 52035 1112 ## COG1362 Aspartyl aminopeptidase 50 35 Tu 1 . + CDS 52077 - 52409 159 ## Mlut_23280 hypothetical protein - Term 52265 - 52292 1.5 51 36 Op 1 . - CDS 52400 - 53923 1102 ## COG5650 Predicted integral membrane protein 52 36 Op 2 . - CDS 53920 - 54153 121 ## 53 37 Tu 1 . + CDS 54092 - 55177 988 ## PROTEIN SUPPORTED gi|163782670|ref|ZP_02177667.1| 50S ribosomal protein L20 54 38 Tu 1 . - CDS 55284 - 57215 1417 ## COG1835 Predicted acyltransferases 55 39 Tu 1 . + CDS 56646 - 58076 402 ## 56 40 Tu 1 . - CDS 57919 - 59370 1312 ## COG0617 tRNA nucleotidyltransferase/poly(A) polymerase 57 41 Tu 1 . + CDS 59436 - 60047 503 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 58 42 Op 1 . + CDS 60262 - 61938 1485 ## COG0728 Uncharacterized membrane protein, putative virulence factor 59 42 Op 2 . + CDS 62004 - 64142 1316 ## COG3468 Type V secretory pathway, adhesin AidA 60 42 Op 3 11/0.000 + CDS 64234 - 65292 694 ## PROTEIN SUPPORTED gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 61 42 Op 4 . + CDS 65390 - 65713 333 ## COG0526 Thiol-disulfide isomerase and thioredoxins 62 43 Tu 1 . - CDS 65831 - 66775 676 ## COG1475 Predicted transcriptional regulators 63 44 Tu 1 . + CDS 66660 - 67247 190 ## Mlut_23410 hypothetical protein + Term 67354 - 67382 -0.6 64 45 Op 1 . - CDS 67201 - 67590 61 ## 65 45 Op 2 . - CDS 67596 - 67850 134 ## - Prom 68002 - 68061 1.9 Predicted protein(s) >gi|289556567|gb|ADCD01000090.1| GENE 1 3 - 465 292 154 aa, chain - ## HITS:1 COG:Rv2495c KEGG:ns NR:ns ## COG: Rv2495c COG0508 # Protein_GI_number: 15609632 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes # Organism: Mycobacterium tuberculosis H37Rv # 2 123 6 123 393 90 51.0 1e-18 MSQKTFRLPDLGEGLTESEIVTWRVAEGDAVTVNQVLADVETAKAVVEVSSPFAGVVAAL HGAEGETLEVGAPLVTFTLEGAEPDVGGPAEGDGRVPTLVGYGAAPDTGKPGRRARRGSA APVTSAAPAGEPARGQAPSTSEAAPAGAGRPQPE >gi|289556567|gb|ADCD01000090.1| GENE 2 462 - 1517 977 351 aa, chain - ## HITS:1 COG:MT2571 KEGG:ns NR:ns ## COG: MT2571 COG0022 # Protein_GI_number: 15842024 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit # Organism: Mycobacterium tuberculosis CDC1551 # 1 322 26 348 348 346 56.0 3e-95 MTFGRAINRGLHRALADDPKVLLMGEDIGALGGVFRITDGLQAEFGEDRVLDTPLAESGI VGTAIGLAMRGYRPVVEIQFDGFVYPAFDQIVANLAKLRARTRGAVPMPVTIRIPFGGGI GSPEHHSESPEAYFLHTAGLRVVSPSSPQEGYDLIRAAVASEDPVVYLEPKRRYHDKGDV DLDVAIPPMSPARILREGRDATLVAYGPLVKTALQAAEVAAEEGVEVEVLDLRSLSPLDT GLVESSVRRTGRLVVAHEASRTGGLGAELVATVAERAFHWLEAPPVRVTGMDVPYPPSKL EHLHLPDLDRILDGLDRALGRPNSLDSVDAFAAPETAEQFLAAQNAGEETR >gi|289556567|gb|ADCD01000090.1| GENE 3 1526 - 2599 925 357 aa, chain - ## HITS:1 COG:MT2572 KEGG:ns NR:ns ## COG: MT2572 COG1071 # Protein_GI_number: 15842025 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit # Organism: Mycobacterium tuberculosis CDC1551 # 1 342 11 358 367 265 45.0 8e-71 MLQVLDAEGRRRPQPELDPWIEDVDADALAALYRQMAVVRRLDVEATHLQRQGELALWPP LLGQEAAQVGSAVALRPDDFVFPSYRENGVALLRGVPALDLLRVWRGSTFSSWDPNETGV ATQQIIIGAQALHAVGYAMGVQRDQADVATIVYFGDGATSQGDVNEAMIFSASYQSPVVF FCQNNHWAISEPVRLQTRRSIADRPWGFGIPSMRVDGNDVLAVLAATRAAVERAADGGGP TFIEAVTYRMGPHTTADDPTRYRDDAELEAWKARDPLTRVEAHLRTLDVDVDAVLAQAQA EADELAAEVRRALEALEEDGADKLFDEIYAEPHQELERQRREHALYLQQFDDEEAGA >gi|289556567|gb|ADCD01000090.1| GENE 4 2837 - 3436 632 199 aa, chain - ## HITS:1 COG:no KEGG:Mlut_06790 NR:ns ## KEGG: Mlut_06790 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 199 1 199 199 258 97.0 1e-67 MTPRTTPDAEPVFQLVEQDEIGYETTHVDAFMARAREARDGGAPLTAEEVRQARFATVNG GYATDEVDDELDRLEEELAAAERQAFVTERGDEDWAADLEERVAELVARADRAPAERFRR PSRADAVSYDVDQVDALVDRLRVTLAGGEGSTDPDAEGGLTADDVRRASFGEAEGAAGYE EGQVDAYLDAAVDVLLRRA >gi|289556567|gb|ADCD01000090.1| GENE 5 3486 - 4322 709 278 aa, chain - ## HITS:1 COG:Cgl1975 KEGG:ns NR:ns ## COG: Cgl1975 COG0575 # Protein_GI_number: 19553225 # Func_class: I Lipid transport and metabolism # Function: CDP-diglyceride synthetase # Organism: Corynebacterium glutamicum # 14 275 8 278 285 150 36.0 2e-36 MTSAVSTSPAPPRGGRDLKSAVLVGAGLLATALVGLLWLDWLLVVLVVALLVGAVSEIAT AVRGIGLDVPRPPLWVAAAVLPLTAWRWGVPALFVALVACLALVAVWTALTRRRPAGQFM LAGVFIVLWAPFLLSFAVALLDEPLGHLMVAILLLMVVSNDTFGYIVGYRLGRTPIAPRI SPKKSWEGLAGSLAGSVLVGVVAVPLLVGQPWWIGAVLGVTTVAAATSGDFSESMVKREL GIKDMSSALPGHGGVMDRLDSLVFASPVAYTVLALPLT >gi|289556567|gb|ADCD01000090.1| GENE 6 4348 - 4869 571 173 aa, chain - ## HITS:1 COG:ML1590 KEGG:ns NR:ns ## COG: ML1590 COG0233 # Protein_GI_number: 15827834 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome recycling factor # Organism: Mycobacterium leprae # 1 173 13 185 185 166 52.0 1e-41 MDRTIEATREDFASVRTGRANPGLYSKVMVDYYGSFTPLQQLASFTTTDARTLLITPFDQ SALRNIEKALSESEVGANPSNDGKVIRIVMPELTAERRKEYVKLVKSKAEEHKISVRNAR RKAKEAMDKAVKDGEVGEDEGARGEKELDALTKRHVELIDEMAKNKEQELLEV >gi|289556567|gb|ADCD01000090.1| GENE 7 4959 - 5726 819 255 aa, chain - ## HITS:1 COG:MT2951 KEGG:ns NR:ns ## COG: MT2951 COG0528 # Protein_GI_number: 15842425 # Func_class: F Nucleotide transport and metabolism # Function: Uridylate kinase # Organism: Mycobacterium tuberculosis CDC1551 # 9 254 27 272 273 273 59.0 3e-73 METNRAPEDPTTAHAPQTSDDTGRRRVLLKLSGEVFGGGKIGVDPETVRGIAEQIAAAAD QVEIAIVVGGGNFFRGAELSENGMDRRRADYMGMLGTVMNCLALQDFLIQAGVTTRVQSA IHMEQVAESYIPLRAIRHMQKGRVVIFGAGTGLPYFSTDTVAAQRALEVGADEVLMAKSG VDGVYTADPKKDPTAERLTHLTYDEALLRNIRVMDLTAMTMCKDNDLDMRVFGMEGPGNV TRALLGEPIGTTVTV >gi|289556567|gb|ADCD01000090.1| GENE 8 5933 - 6769 505 278 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42631241|ref|ZP_00156779.1| COG0264: Translation elongation factor Ts [Haemophilus influenzae R2866] # 1 277 1 261 283 199 42 5e-50 MANYTAADIKALRERTGAGMMDVKKALDEADGDAEKAIEIIRVKGLKGATKREGRSAAEG LVAATVENGVGVMIELNCETDFVAKADKFIALGDVVLRAAVASGATDVDGLLASDHEGRT LGDYVTEEGALLGEKVAVRRLARVEGAFVDAYLHKTSKDLPAQVGVLLAVDADSAEAKAA AHDIAVHTAAYSPTYLTREDVPAETVENERRIADETARAEGKPEQALPKIVEGRLTGFFK EIVLVDQPFAKDPKQTVGKVASDAGTNVTGFARFRVGN >gi|289556567|gb|ADCD01000090.1| GENE 9 6873 - 7721 1417 282 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|239917202|ref|YP_002956760.1| SSU ribosomal protein S2P [Micrococcus luteus NCTC 2665] # 1 282 1 285 285 550 98 1e-156 MPVVTMRQLLDSGVHFGHQTRRWNPKMKRFIFTERNGIYIIDLQQSLSYIDRAYEFVKET VAHGGTILFVGTKKQAQEAIAEQAGRVGMPYVNHRWLGGMLTNFSTVSKRVQRMKELEEI DFEDVAGSQFTKKELLLLNRELEKLQANLGGIRNMSKTPSAVWVVDTKKEHLAVDEAQKL GIPVVAILDTNCDPDEVAYPIPGNDDAIRSVNLLTRVVADAVAEGLIARQGGKSGQAAAE PMAEWERELLEQHNAQQAEAPAAEAPAEQAEAPAAEAAPQGE >gi|289556567|gb|ADCD01000090.1| GENE 10 8126 - 8800 199 224 aa, chain + ## HITS:1 COG:Cgl1980 KEGG:ns NR:ns ## COG: Cgl1980 COG0739 # Protein_GI_number: 19553230 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane proteins related to metalloendopeptidases # Organism: Corynebacterium glutamicum # 82 183 42 141 164 71 40.0 1e-12 MTPRTRLPRPLPRPHIAGCVAAALLAWLVLALGVGGLDPVPRATSAPSGRDARLLVAASP ADPGSTAAPVAWHAPVAGAAPGDVLRAFVAPERPWGRGHRGVDLAVPSGAAIRAPAAGRV VFAGVVVDRPVLTLEHEDGTRSSLEPVESDVVVGAVVAAGDPVGRLAGAPPHCTRACVHW GVREPDGWRVGDAAFDRYLDPLVLIGWSGPSVLWPHAAPYPARP >gi|289556567|gb|ADCD01000090.1| GENE 11 8736 - 10196 952 486 aa, chain - ## HITS:1 COG:XF0887 KEGG:ns NR:ns ## COG: XF0887 COG0438 # Protein_GI_number: 15837489 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Xylella fastidiosa 9a5c # 292 485 228 415 860 65 30.0 2e-10 MPGTRPGRGCELTSSADDRVREDAEEAPVWRTGCNRSVIKIHDRYRNAIRNSDDAQVADR RATRPARHPPRAAVPAPLRRGASVVRVSPSRPLRLLMDARYTRTDFHDGISRYGASLIEA VARRTDAPGPEGADVEVEVAMLISDERQLALLPDGVPWHLVSGPTSPREPFVARQVARLR PDVVFSPMQTMGSWGRDYALILTLHDLIYYEHRTPPRNLPEPIRWLWRAYHLTKTPQRLL LDRADAVATVSRTTAELIARHRLTRRPVHVIANAAQAVPEPRDPDETPDRTLLYMGSFMD YKDVESLVAAAPLLPGYALHLLSRISPERRGQLEARLAARRSAAGAAGADVVFHDGTDEA EYVRLLRRATAAVTLSRAEGFGLPVAEAMAHGTPVVCSDLPIFREIAGAGTPSFRGVPLE GDRAAALAARVRELEDPAEFAAASRASVAQAARFSWDESARRLLDLTAALGTARRAARAR TDRSSR >gi|289556567|gb|ADCD01000090.1| GENE 12 10217 - 11128 802 303 aa, chain + ## HITS:1 COG:BS_ykfC KEGG:ns NR:ns ## COG: BS_ykfC COG0791 # Protein_GI_number: 16078364 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell wall-associated hydrolases (invasion-associated proteins) # Organism: Bacillus subtilis # 176 299 165 290 296 74 34.0 2e-13 MAAGPVREEDPMSVTSSRAAVRRAPRTAAASVALALGAAALTGVGTVSVAETAQAAETTY TVRSGDGWWIIAQRTGVSMSTLQSLNGMTAATVLHPGMVLKTSGTATPAPAPAPSTSGST YTVLAGDGWWIISYRTGVSASVLQSINGMSSSTMLHPGMVLKTTSVSTSSAPAPAPAPAS KQAAVDYVRAAVRNPSSYYVWGGNGPSGFDCSGLTQQAMAQAGISIPRRAGDQYLAAKSY VPISQAQPGDLVFYANQSTGRIYHAAMYMGGGQLAHALNEDAGLVFTSTTIMKSDMLAVA ARY >gi|289556567|gb|ADCD01000090.1| GENE 13 11310 - 12380 920 356 aa, chain - ## HITS:1 COG:alr2265 KEGG:ns NR:ns ## COG: alr2265 COG0438 # Protein_GI_number: 17229757 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Nostoc sp. PCC 7120 # 12 296 46 317 378 95 27.0 1e-19 MPRTEAGPDTVEHRPEATVHLLRSLPAPTHEYYRVVLPRHAKTSFRRIYREVQPDVVHAQ CHYMIGEAAINEAERRRIRIVSTNHFMPENLEPFLPFPQWFLDIVSRVSWKDMGRLMGKG AVVTTPTALAAQAMAEHAGLDNVLPVSNGIDASAYELQPGEKVDHPGHPVVLFVGRLAVE KNVEVLIRAIAHLARARPDLDVHAEIVGDGEQRDRIRATVDEEGAADRVLLRGHVSEEEL RAAYLRADVFCQPGTAELQSLVTLEALSASTPVVLADALALPHLVDEGVNGHLFPPGDHV ALADRIARILDLSDADRAAMGEASHAKALHHSAQKTVDIFERLYRGATAAEVRALL >gi|289556567|gb|ADCD01000090.1| GENE 14 12655 - 13296 180 213 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase [Cryptobacterium curtum DSM 15641] # 18 192 477 666 904 73 26 2e-12 MRVIDVGLREGHEYRVRDTWLTVPNLITLARFALVPVFVWLTVDGRHLDAFVILAVLSGT DWVDGYVARRFDMISTVGRWLDPVADRLSLLVVAVTFVATGIAPLWLALAIAIPDVVLAA VCLWLFGGSPDLPVTVLGKVRTALLLVGTPLLLLARVPGVDGGPWSGVALVLVGAGCLLH ILAAGDYLVRAVGKARDLRADGQDPREEPSRRG >gi|289556567|gb|ADCD01000090.1| GENE 15 13448 - 14371 850 307 aa, chain - ## HITS:1 COG:no KEGG:Mlut_06670 NR:ns ## KEGG: Mlut_06670 # Name: not_defined # Def: protein of unknown function (DUF1469) # Organism: M.luteus # Pathway: not_defined # 1 307 1 307 307 489 97.0 1e-137 MSHQAPPADASKARAPRTAVPVTPQTRASSLTDLLGAAVRLLPLQMKDELALAKGHVAAK GKKAGIGAGVAVVGLFFLALMVVALVVTLIGAFADPTFWFPALMVALAFLVLGLIFAGVG LVMVKGAMPLVPQETVRNLEYDLGYLKEGNAFDPAEYDRLKAERAEAKRVEAAREAERKK VEKEENKKARKNGEAAPHPDRDDASEAEIRRRADLRRRHLGDIRSGLDEKTSVKGQLAAF AAQRKGRGVTPETAHATEQTAPFTGAARAGERTAEAEDYVKDNWQPLALLGASSAAFLAL AGRLRRR >gi|289556567|gb|ADCD01000090.1| GENE 16 14503 - 15336 796 277 aa, chain - ## HITS:1 COG:BMEII1060 KEGG:ns NR:ns ## COG: BMEII1060 COG0656 # Protein_GI_number: 17989405 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Brucella melitensis # 1 274 19 291 294 320 54.0 2e-87 MTSVPTVPFHDGQQIPQLGLGVWQVEDDVAADVVEQAIRAGYRHIDTAAIYGNEEGVGRG IAASGVAREELFLTTKVWNSDQGYEEALAALDASLGKLGTDYVDLYLIHWAKPAQGKYLD TWKALIEAQKQGKVRSIGVSNFPAAQLEEIIEATGVVPVIHQVETHPYWQQRELREVEGR HGIVHESWSPLGQGGDLLADPVVTEIAEARGATPAQVVIAWHLAKGFVVIPKSVTPERIV SNLEAAGVELTADDVARIDALDREDGRLGPDPAVIDF >gi|289556567|gb|ADCD01000090.1| GENE 17 15369 - 17531 1014 720 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MCRVQPRAGGRHSRRRSPGRGTTVGRLLPRDDGAHRAGEGREHLSGVVGRDEPGVGAPAP DVPRVVDGRAAQQLRVRLDVDDGGPRGDPGLARGHLGGEEVVQVRDVALVVVEVELEVEA QRVGEHVQDGAAGRGVRPGDPRPVRGPADGAGPGVGQEAVQQGRRVLDPLRGLERADDRQ AVLGQSLDGREHLLRGVGVHPGVPLGGGRGVARMIEGAAHDHDAAGEERQARLGPQREGQ VRQWRGAEDRRLPGVGPQLVQPHVHGRPGREPLGAPIDPGVAETAVAVGLRGGDRGPAQR GLGTDGHLDVGPAGQVQHRGRVQGAVPGGRVAARGGDGRELGTDTQAVGAHEVEQGAGVV DAGVDVGKEAGGHGGHCSAVATARPIRRGPPRVRDRRASRGGRAAVGVEGLAVDVAGLAR GQEHVGGRHLHGLAGAADGGAVAELGQLLLGLTVGHVLHRPDRPGRHRVDTDALRAELLG QALGEVVDGALGGGVVEEPRVGVVGLHRGGVHDRAARAHVLQRGAAEREHGHDVDLERLV DLLVGEIGQVIGDELLARVVHEDVQAAEALRRLVHEGGTVVRVHQVPRQRDGGAPGRLDR RQDAVGVGLLLRQVGDGDVRALTGVGDGDRGTDAGVAAGDQGLAAGQPARPPVRVQTDVR DGIRLHVQARLGLALLGDAELRVAGARVVVGQLGVLDGGGGGGGRLGSAHGPGRYAGDGG >gi|289556567|gb|ADCD01000090.1| GENE 18 17573 - 18202 558 209 aa, chain + ## HITS:1 COG:SMc01236 KEGG:ns NR:ns ## COG: SMc01236 COG1801 # Protein_GI_number: 15965309 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Sinorhizobium meliloti # 4 183 8 193 267 108 33.0 6e-24 MDARIGTSGWTYKHWRGTFYPQGLRIADQLDHYTERFRTVELNGSHYRWPADSTVEAWRE RLPAGFEMAVKASRYLTHYRKLNEPQDWVERIVHTLDLLGDHAGPLLLQLPAHLHRDDDR LAGFLGLLPERVRVAVEVQHESWLDEDVFDLLDRHGAGFVVSVIAGREPVLRATGRLAYV RFHNADPDWRYGGSFPDAELAPGWGGCGS >gi|289556567|gb|ADCD01000090.1| GENE 19 18407 - 19252 730 281 aa, chain + ## HITS:1 COG:slr0314 KEGG:ns NR:ns ## COG: slr0314 COG0596 # Protein_GI_number: 16331885 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Synechocystis # 9 279 10 275 276 239 44.0 3e-63 MTLMQIPTDHGTIGLNVEEAGHGRPVVLIHGWPLTLDSWKDQVAALSPHYRVITYDRRGF GASEKPAGGYDYDTMTADLHGLLTELDLRDVTLVGFSMGGGEVARYMSRFGADRIHSVVF AGAVPPYLLKTDDNPDGPLTEKQAAEMRAGLEKDRESFFDDFTTTFFSTPKLAGLTSSLK VTEEQRQEAIRMALQSDQTAALACMDAFGATDFRRDLPAVTVPALVLHGDADQIVPFKGS GKRTHKAIDGSRVELVKDAPHGFNTSHSEEFNRILLEFLAE >gi|289556567|gb|ADCD01000090.1| GENE 20 19312 - 19842 178 176 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MPFTTAPTLACQVRSDAVITRSVGSGHPVGRPARQHVEDEADERGCPQMEACGPERVDSG RQVGDQERQSQQEPQHRHEAALGPALSRSRVLQEAAHGHPTHQGEHTEPDDPDDRHRRSS LHSEAQLPKPSRSPAGPAANGHATGRHAFSCASDVTDVVVSRSPPTSGRRPDPAGT >gi|289556567|gb|ADCD01000090.1| GENE 21 19926 - 20486 249 186 aa, chain + ## HITS:1 COG:no KEGG:CMS_0510 NR:ns ## KEGG: CMS_0510 # Name: not_defined # Def: putative integral membrane protein # Organism: C.michiganensis_sepedonicus # Pathway: not_defined # 25 172 24 174 209 63 31.0 4e-09 MKRQRTESDEVSGGGGAPEVISLPWATVGHLSTGLALMPGVWLLWWLLSQALATPLGGWF SLGLAVTAVVVSSILVACGERPFVVAAAHPSPGGWGYAVWSFVVPPIVGGIVGWFVSAGV AVCGAVAMFLVFAAEAVWVKVWKPGMSAAEVQEAWGKTTQMTRDMTAEDRREEGWVNPPR KCEDRD >gi|289556567|gb|ADCD01000090.1| GENE 22 21245 - 21583 270 112 aa, chain + ## HITS:1 COG:no KEGG:KRH_00550 NR:ns ## KEGG: KRH_00550 # Name: not_defined # Def: hypothetical protein # Organism: K.rhizophila # Pathway: not_defined # 13 112 1 100 100 178 98.0 4e-44 MCEQFDPGRGDGMSVTKGLLVRLEALPGKEDEVQEFLGIGRGLAEEEPATVAWFAIRLGP SSFGIFDVFPDDAGRDAHLSGAVATALGEQTGKLFSEPTIEKLDVLASKLPA >gi|289556567|gb|ADCD01000090.1| GENE 23 21644 - 24226 1059 860 aa, chain - ## HITS:1 COG:DRA0188 KEGG:ns NR:ns ## COG: DRA0188 COG0178 # Protein_GI_number: 15807854 # Func_class: L Replication, recombination and repair # Function: Excinuclease ATPase subunit # Organism: Deinococcus radiodurans # 16 852 96 922 922 963 62.0 0 MVESSAPSKLSVQPDVRVRGAREHNLQDVDLTVPRDATVVFTGVSGSGKSSLAFGTLYAE SQRRYLESVAPYARRLIDQAGVPDVDSITGMPPAVALQQQRGSGNTRSTVGSITTLSSSV RMLYSRAGDYPDGQPMLYAEDFSANTVQGACSECHGIGRVYAVDEQQMVPDPSLTIRERA IASWPTAWHGHQLRDVLVALGYDVDVPWRDLPKKDRDWILYTDETPFVPVHSRLTLSESK AAIDAGVEPSYSGTFVGARRYILDTFANTKSASMKRRVVQFLTAAICPVCDGKRLKPEAL SVTFEGFDIAEFSQLPLRELVTILSGVVARVEDPEAASSDVRPTASRAPEKHAAAVQLAS GVLQRLRPLVDLGLGYLSLSRTTPTLSGGELQRLRLATQLSSDLFGVVYVLDEPSAGLHP QDVAALLQILDGLKGRGNSLFIVEHSVAVMRHADWLVDIGPGAGEHGGRVLYSGPPDGLA GVTESVTREYLFGGRGLPLRTPREARGWLRLENVTRNNLHDLTVDIPLGVFTAVTGVSGS GKSSLVSQALPSLLGDRLGLAVRADDEPVSDESLLADAPEHLEGRVTGPVTGVQRLVVID QRPIGRTPRSNVATYTGLFDHVRRRFADTPEARSRGYKPGHFSFNVAGGRCPTCEGEGSV MVELLFLPSVYTECPDCHGTRYKASTLEITWRGRTIADVLSMSVEEANLFFVGDEKITRS LAALSDVGLDYLRLGQPATELSGGEAQRVKLATELQRAQRGDTLYVLDEPTSGLHCADTD RLVAHLQTLVDAGNTVVAAELDMRVVAVADHVIDLGPGAGDAGGTVVAAGTPAHVADQGV GASSGYLAAALQAATNVTPT >gi|289556567|gb|ADCD01000090.1| GENE 24 23660 - 24727 335 355 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289706674|ref|ZP_06503022.1| ## NR: gi|289706674|ref|ZP_06503022.1| conserved hypothetical protein [Micrococcus luteus SK58] # 232 355 1 124 124 223 99.0 1e-56 MPRGRPGSDGAFTDGERWVRDHLLLVHRVHAADAVAFRAGPLDCVRGEVLRIQHGLSIRV VPGPGVQHPYRARQCGDAAHGRSGVPGTPLLLQGDRRRHPRDRVDIGHSRLIDQAAGVRC DRLQIASLRLGVQRPERQRGLSRAGHTGEDDGCIARHREVDILQIVFAGATNANVGLHGE LRRRGGFNHGRMLATHGTVGRSASGGEGFCTDEGRRTTSRLRQARGVVVGGVDISGAEFR AHAGDDAVARVAGVLTEALLTDPYTVSFLPRSRRRERLADMFDRIIRDTLRPDPARGGRA LVKRRQRDARQAGVGVYLESSTRANVPLDERLEFRETGPVIAYGTEDLTGMWWVA >gi|289556567|gb|ADCD01000090.1| GENE 25 24887 - 26497 1421 536 aa, chain + ## HITS:1 COG:MT3401 KEGG:ns NR:ns ## COG: MT3401 COG0578 # Protein_GI_number: 15842893 # Func_class: C Energy production and conversion # Function: Glycerol-3-phosphate dehydrogenase # Organism: Mycobacterium tuberculosis CDC1551 # 45 534 51 532 585 392 49.0 1e-109 MPTLRTLPLSAATREDHLARLRATSPEAPLDILIVGGGSTGVGAAFDAATRGLDVGIVEA RDWASGTSSRSSRLMHGGLRYLEMLDVKLVYEALRERDLLLTQTAPHLVRPLRFVFPFFH KVIDRGFIGAGVTMYDAMQSLGRRRAMGAHRHLSRRSMAATFPSLDDEKIVGAVEYADAQ FDDARLAMMLVRSAVDHGAVAANYTAVTGYLRGDDGRVQGVRVREETSGEEFDVHARAVI LAGGVWTQEQQELAEADGGLEVLASKGAHITVPRDRIRADAATGVITKTEKSVLFLIPWD EYWVIGTTDTPWAEDVAHPATTADDIDYILEHANAVLKEDLTRDDVVATYAGLRPLLQPV AGSDGGSTKISREHTVTEVAPGLTAVAGGKWTTYRAMAEDVVDFVVRETHPTRPSLTERI PVLGGLGYSEIEAEADRIAADYGLDEARVDRLLFRYGTVLRHVLDLIDADRSLSVPLAEA PRYLRAEIVYAARAEGVVHLDDVIERRTRLSTEVRDRGVAAAEEIASLVAPRAGLG >gi|289556567|gb|ADCD01000090.1| GENE 26 26578 - 28551 707 657 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRGEEAGERGDEVHAAVVLHTGGQGLDLRGAADHAEVVPQPLDQRAGDGDRALQRVHRLL VANAVRHRGEQAVVRVHRLLAGVDQHEVAGAVRVLGLADLEARLAEGRRVLVAQDAGDRR LAQQLLAGHGAHLGGGADDLREHGHRDAHVRADLLVPVEGVQVHQHGAGGVGDVGDVPAA RAAAGEIPHEPRVRGAEDEVAVLGGLPGPVHVLQDPGHLGAGEVRGQRQPDPLLVAVRAG VAGQALAEAVGAGVLPHDGVVHRPTGVAVPHHGGLTLVCDAHGGDVVPGHLGAGQGLADD LAGVRPDLHRVVLHPAGAREDLLVFALTSGHDGPTVVEEDRARGRGALVDGHHVAGGGHV LLLRRWSRGCGGGGHVPAGECARPGRTGGLLRGTGCSGEQRRGEAGQDGADERADDRHPG VTPVRAALVPDRRDGVEQAGAQVAHRVDGVPRGAAQARADRDDEQGHRERAEPGGGGAEE QDHEHQDERGDHLGDHVPQRVADLGACGEGAQDRPLVRLRPVVVAVGQPGQGRAEEGTDQ LRREVRERGAEGHGDAGGVLLGAADEQADGHGGVQVRAGRGSDVDAREDAQPPAEVDEQP TSAVALGLRQDDVGDDADAEQEEDRRAGDLMQEDRAHGRAPFSERGRCRRLRARRRR >gi|289556567|gb|ADCD01000090.1| GENE 27 27475 - 29007 1379 510 aa, chain + ## HITS:1 COG:MT3798 KEGG:ns NR:ns ## COG: MT3798 COG0554 # Protein_GI_number: 15843314 # Func_class: C Energy production and conversion # Function: Glycerol kinase # Organism: Mycobacterium tuberculosis CDC1551 # 6 502 16 515 517 617 62.0 1e-176 MTTPRYVMAIDQGTTSTRAILFDHSGAIVSTGQREHEQIFPRAGWVEHDPVEIWTNTREV IGEALARAEVTRHDVAAVGITNQRETTVVWDRNTGRPVYNAIVWQDTRTDRLCERLAGDA GADRYKERVGLPLATYFSGPKVAWILENVDGAREAAENGDLIFGTTDSWLVWNLTGGGAG GRHVTDVTNASRTMLMNLDTLDWNEEICADMGIPMSMLPEIVSSSAEVGTVSGQQLLRET PITGILGDQHAATFGQACFEVGQAKNTYGTGNFMLINTGEEPVHSDNGLLTTVAYRIGDQ KPVYALEGSIAVTGSLIQWLRDNLGMIGSAPEVETLAAGVEDNGGVYFVPAFSGLFAPHW DATARGAMVGMTRYVNKGHIARAALEATAFQSREVLDAMNADSGVDLTELKVDGGMVANE LLMQFQADLLRVPVVRPKVIETTALGAAYAAGLAVGFWASQDELVANWEEDKRWEPTMDE EEAERALRLWKKAVERTRDWVDEDVESAQG >gi|289556567|gb|ADCD01000090.1| GENE 28 29199 - 29411 79 70 aa, chain - ## HITS:1 COG:no KEGG:Mlut_23060 NR:ns ## KEGG: Mlut_23060 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 10 59 118 167 178 77 86.0 1e-13 MRRRARELRPEVAGLEKVVASANNADEENLSEEIPHRSAIKDGRNVDADYFACLATAALG GSGGGRGRPG >gi|289556567|gb|ADCD01000090.1| GENE 29 29304 - 30122 383 272 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MWNLLGEVLLVRVVRRGHHLFEAGHLGPEFARPSSHPALAGPLMGAFGEGVEWVLTRRQS ACSFDDVGRQDVPEHRHLAGSGEAVHTHQTWPARLDDVGPRDDINAGGLQMPRVLVGSHI RGTQRWLQCRDGALVLLPEARRGQSIPRLTFAPQDSDVRSVPVQSEPARHQSLLVVLLRG VDLGRRGIGAEHAQQAERVPLRLVGVELQGIPEGDVPAMPVTGVGLPPSEHTTLTVGLAH VALARGLVGDQVDPAYGLQGGAPACVAGLGHH >gi|289556567|gb|ADCD01000090.1| GENE 30 29781 - 30563 577 260 aa, chain - ## HITS:1 COG:no KEGG:Mlut_23080 NR:ns ## KEGG: Mlut_23080 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 6 159 29 185 191 282 93.0 7e-75 MSSSTILAIRHTYKESGLPSRAAATPERVLAYTREQHHVGKFPKEPARHWLIFMGEGGRR SRLTAVYENRGEAVAERTERYRYYDVAPVPLLASLEERLVVEWSADPVNWAKRGPLAARF PVLEIADPTTEAFPGFDHVLLSYGDLQSMVTETRYAGWRTALEAVRGIYLIADETAGQCY VGKADGERGVLGRWEAYARDGHGGNVALRDALELDPDQPERYTFSLLRVFGSNTPPAQID AAEKHYKEALMTRRFGLNRN >gi|289556567|gb|ADCD01000090.1| GENE 31 30779 - 34204 2642 1141 aa, chain - ## HITS:1 COG:MA2418 KEGG:ns NR:ns ## COG: MA2418 COG4096 # Protein_GI_number: 20091249 # Func_class: V Defense mechanisms # Function: Type I site-specific restriction-modification system, R (restriction) subunit and related helicases # Organism: Methanosarcina acetivorans str.C2A # 4 1135 3 1137 1146 981 47.0 0 MAGNMDWVERALPVAHEDAAQAEGYMSTDPRAAAFYARRCVERVVEFVYATHRLEDPYKT DLSGLINGVAFTGLAGRPVVDKLNFLRKAGNNAVHKDSVLDARAALTILRELFHVLVWAA FHHGPHPEAVPTGAQFDHALAPQKAAMSVEQLDAVIARLKKQDEDNARLREQNEQQAAAY EAEIQALREQIAAAQAAATTSELPDLHDYDYAEAETRSLFIDLLLAESGWPLDQARDREY PVTGLPTPGGTGRVDYVLWGADGLPLAVVEAKRTTKSALEGQEQARRYADALEAQFARRP LIFYTNGYDHWFWDDAAFGEAGGYPPREIEGFFTADELERLIQRRTVRQDLTDVPVNVDI AGRPYQLEAISAVGQALAARQRDALLVMATGTGKTRTAIALVDQLIRGNWVKRVLFLADR TALVRQAKRAFAANLPDTAVVNLQDEKRGEGRVYTATYPTMLNLLEHDGQDGGTRRFGAG YFDLVIIDEAHRSVYQKYGAIFDWFDSLLVGLTATPKDEVDHNTYRLFHLEDGVPTFAFD LEEAVEQGYLVPPLGVSAGTEFLRQGIRYADLSDEEKAEWDALDWGEDGPPDSVDSEQVN RFLFNEDTVDKVLELLMERGQKVAGGDRLGKTIVFAKNQNHADFIERRFNARFPELGGTF ARVITSKTAFNDALLDDFSDSDKAPHIAISVDMLDTGVDIPEVVNLVLFKVVHSKTKFWQ MIGRGTRLCPDLFGPGQDKKNFTVFDFGENLPYFNQDLPEPGSSVQKSLTQRLFEARAGI VAALDAREGDGEAGSASVVRQAHATWLHSYVEGMLMQNLLVRKHRRHVERWSEPDAWAAV TAEDVDELADHVAGLPSTLRDPDEAAKRFDLVTLRWQLATLDGDAALAERCRRSVQEVAG ALLSQLAIPAVKVEESLLRSVAEDLWWEGAGVVDVEALRESLRGLVVFLPRLSSSPVYTD FVDTLGEIDEVVVVPARPGMNWERYREKAMAFLRAEEDTLALRKLRGNQPLTATDLEELG RMLVAAGGSDRPELDWVREHAGAELGVFVRSLVGLERRAAEEALAAFLDEGRWTTRQIRF TRMLVDDLVRNGVVDPGRLYEDPYLALGGVDAVYPQDAADAVVAVLAEVRARAEVEAGKV A >gi|289556567|gb|ADCD01000090.1| GENE 32 34259 - 35041 447 260 aa, chain - ## HITS:1 COG:MA2415 KEGG:ns NR:ns ## COG: MA2415 COG0732 # Protein_GI_number: 20091246 # Func_class: V Defense mechanisms # Function: Restriction endonuclease S subunits # Organism: Methanosarcina acetivorans str.C2A # 4 260 126 391 391 91 27.0 2e-18 MNKSAAVPGLNRDDVYRLSIRLPDLKEQRRISAILDQADEQRSRRRAQLERLAALVQVAF ADRVREAGPGQPLSELASFVRGVTFKPEDVAESGVPVMRTKNVQKRLDSSDLIRIPAELI KNEAKYLQEGDTLVSSANSYNLVGKCCFVDSLPEPSAIGGFVSALRPGPDVDPTFLYAWF NSDRVQATVRSFGNKTTNISNLDIKRTLQLRIPDVSLDMQREFAAVVEKIDVQRARVERA LALEDELFASLQHRAFRGEL >gi|289556567|gb|ADCD01000090.1| GENE 33 35338 - 37080 931 580 aa, chain - ## HITS:1 COG:SP0886 KEGG:ns NR:ns ## COG: SP0886 COG0286 # Protein_GI_number: 15900769 # Func_class: V Defense mechanisms # Function: Type I restriction-modification system methyltransferase subunit # Organism: Streptococcus pneumoniae TIGR4 # 91 580 1 497 497 515 51.0 1e-146 MDLLPEPFQLLHGGLLRPAEPGLEVGVCGSGAGQVDAPTFEGPAQDGRLYVDAHRGHRPP PSCAGAALCRPEFSLVIAWDAVSPTPYTRVVITGTLKNQVDRVWDAFATGGISNPLEVIE QITYLLFLRRLDEAQTQAEAKARRTNQPVETTIFDADHQHLRWHQLKNVASDELFARMDR EVFPFLRRLGQQIGGEDSTYAHHMRDARFTIPNARMLATAVDLIDKLPLTNRDTTGDLYE YLLSKLSTAGRNGQFRTPRHIIDLMVRMTAPTPEDVIVDPACGTAGFLVGASEYLREEHP ELFFDMNQRLHFNRRMFHGYDFDSTMLRIASMNMLMHGVESPDIAYRDSLAQGASDGDAG KYSLILANPPFAGSLDAEGVSSDLQRVVKTKKTELLFLALFLRLLQPGGRAAVIVPEGVL FGSSKAHKDLRRMLVEDHHLQAVVKLPAGVFKPYAGVSTAILFFRNDGPGSTDDVWFYDV RADGFSLDDKRTPVEANDLPDLVQRWQNPAGEKDRPRTAQSFLVPKADIVEQGYDLSLNR YKELEIEEVEHRDPLEILVDLEQLDAEIAAGTAELKGMLR >gi|289556567|gb|ADCD01000090.1| GENE 34 36910 - 38058 584 382 aa, chain + ## HITS:1 COG:RSc3252 KEGG:ns NR:ns ## COG: RSc3252 COG2856 # Protein_GI_number: 17547969 # Func_class: E Amino acid transport and metabolism # Function: Predicted Zn peptidase # Organism: Ralstonia solanacearum # 12 372 7 361 376 153 34.0 5e-37 MSTVRVDVEPAVLRWALERGGIDLASATTAHPDLEAWLSRTKKPTMKQLERFGQKVHVPF GMLFLSAPPAPAPIPIPDMRTPGSQGVGHPSAELVDVLRECQLRQDWYRDHMLAIGANPV PLVGSATLQDDTEDAGTRLREILHLDALSGASDAFRSVLVGALEEAGVLVMISGYVGNET RRPLNPDEFRGFALADDLAPLIFVNGTEAKTAQHFTLLHETAHLLLGHSALSDARPGRHA PYEEAWCNRVAAAALVPRVVLEQQQERLSTEFDEVVADVAKRCQVSRAVVVLRMKTCGLI TPAAADAQLAALARVPHPQTPAPKGGGGDYYRTARYRLGVPFTTAVVASAREGGTSYRDA FRLLGTHKREVMDTLAQKMAAA >gi|289556567|gb|ADCD01000090.1| GENE 35 38055 - 38558 194 167 aa, chain + ## HITS:1 COG:no KEGG:Sked_03120 NR:ns ## KEGG: Sked_03120 # Name: not_defined # Def: hypothetical protein # Organism: S.keddieii # Pathway: not_defined # 2 164 1 162 163 149 47.0 3e-35 MMFLLDANTFITPKNSYYGFDLAPGFWTWLERAHAAGWVASVEAVRQELCRGGDELATWA SNHPQLFLPLTSEVPQRIGELAQWTLTRQPAYQQAAQDEFLDDSADLLLVAQAACMDATV VTFEVPAPQARKRVKIPDACAALETRCVDLWECMRQTSPRLTLDLVP >gi|289556567|gb|ADCD01000090.1| GENE 36 38670 - 39956 1045 428 aa, chain - ## HITS:1 COG:Cgl2923 KEGG:ns NR:ns ## COG: Cgl2923 COG0305 # Protein_GI_number: 19554173 # Func_class: L Replication, recombination and repair # Function: Replicative DNA helicase # Organism: Corynebacterium glutamicum # 1 418 90 508 510 490 60.0 1e-138 MMLSKDAIADVVELLRGHDFYRPSHEMIYEAIIDLYGRGEPADAVTVADLLNKRQELSRV GGPAVLHELIQSVPTAANASFYAEIVAEKAVLRRLVTAGTKITQLGYQGDGEVEEIVNEA QSEIYKVAENRQSEDYVRLAEIMEHAVDEIEAAGNQGEGLTGVPTDFYDFDELTQGLHGG QMIVIAARPAVGKSTLALDFARAAAIHHNMATVFFSLEMGKNEIAMRLLSAEATIALQDL RKGTIRDDQWSKIAATVGRLNEAPFFIDDSPNMTMMEIRAKCRRLKQKSNLKMVVLDYLQ LMSSGKKVESRQQEVAEFSRALKLLAKELDVPVIALSQLNRGSEQRTDKRPQVSDLRESG SIEQDADMVILLHREDVYDKESPRAGEADLIVAKHRNGPTKTIVVGFQGHYSRFSNLASD AGGGPGGF >gi|289556567|gb|ADCD01000090.1| GENE 37 39423 - 40412 76 329 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MQALRQLVEVVEVGGDARQALPLVAGRLDLVDGVLHDLREAHVVLGLTVLRHLVDLGLRL VDDLLDLAVALIPQLGDLGAGGHEAPQDGLLRHDLRVEARVGGGGHGLDQLVQHGGAAHA AELLPLVQQVRHGDGVRGLTAAVEVDDRLVDHLVARPVEVVAAQQLHHVRDRVLGEHHAA QHRALRLQVLGRQEAFRGTAAVVGARVSVVLSQRPETPFPQPARRRPSPVFPALIPLLSP PVPPHPPAGGRCDGPRGDGPSGCAPVSGHLRPIPALALGIPRDTTRAVEAGQPRFPQSLW TTCGFGGVSCGSPGDHAGDNRSTTPRIRL >gi|289556567|gb|ADCD01000090.1| GENE 38 40795 - 41970 994 391 aa, chain + ## HITS:1 COG:BMEII0224 KEGG:ns NR:ns ## COG: BMEII0224 COG1804 # Protein_GI_number: 17988568 # Func_class: C Energy production and conversion # Function: Predicted acyl-CoA transferases/carnitine dehydratase # Organism: Brucella melitensis # 4 384 41 424 454 252 40.0 9e-67 MPPATTAPSPASLPLDGVLVADFSRVLAGPLATMTLADLGARVIKVEHPERGDDTRGWAP PRSATGATYFESVNRNKESVGWDLKDPEDQRRAAALAARADVVVHNLKPGTMERLGLGYD DVARENPSVVYAAVSGFGDREGRDLPGYDFIVQAAGGLMSITGEPDAPMKAGVALVDVLT AKDLTAGVLAALLRRERTGEGAHLRLNLLSSLQGALANQGQAWLGAGVVPRRMGNDHPSI APYQLLACRDAPLAVAIGNDAQFRTFAAALGVPGLAEDPRFTTNTDRVEHREELRTALED ALSAETAAHWRDVLQAERLPVGLVSTVAEGVELAESLGLEPTVEVQDRSGAPAGRQFRHP VQWDPPVAHPRQAPPALGADTAAVNTWLDAR >gi|289556567|gb|ADCD01000090.1| GENE 39 41996 - 43222 1313 408 aa, chain + ## HITS:1 COG:MT0410 KEGG:ns NR:ns ## COG: MT0410 COG1960 # Protein_GI_number: 15839783 # Func_class: I Lipid transport and metabolism # Function: Acyl-CoA dehydrogenases # Organism: Mycobacterium tuberculosis CDC1551 # 13 404 10 395 396 422 57.0 1e-118 MTTPFHAEADSFLGRADVVGLDSLFSAEEKAVALKVRGFVDEHIRPHIARWYDDAVFPRE IVPELGRLGVLGMPYEGHGMPGRSAVEYGLAAQELEAGDSGLRTFVSVQGSLAMGAIHKH GSEEQKAQWLPRMTTGEAVGCFGLTEPGAGSDPASMTTTARQEPGGDWVLDGVKRWIGLA TLADVAIIWAQTGEPGDGRGVRGFVVPTDTPGFRAEAITQKLSMRASVQCEIHLDGVRLP ASAMLPADSAVGLKGPFQCLNEARYGIIWGAMGAARDSFDAVLDYAMQRQQFGVPLASHQ LTQAKLADMAVAIGKGYLLAHQIGRAKDAGPLTPAMISAGKLDNCRVAIGIAREAREMLG GNGITLEHSPLRHANNLESVRTYEGTDEVHQLTLGRHLTGIGAFAPAR >gi|289556567|gb|ADCD01000090.1| GENE 40 43238 - 44893 2048 551 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|239918777|ref|YP_002958335.1| SSU ribosomal protein S6P modification protein [Micrococcus luteus NCTC 2665] # 141 551 1 411 411 793 99 0.0 MGQGHLRLDRAAGQGQRHHDDDALLRLAVRGADRPQVGHRQLGRPGVRGRGLPRVHLEPD PGGAVAGEPFDAEGVERRGAGAGVDLGLDPGGVGGGQADPFAPAHQPRASGAVVGGGHAV GGRGRVLRFRHAPHPPRKAVMKLAILSRSLRAYSTQRLKTAALERGHQVKVLDTLRFGID LSSDEPDLMFRGRPLSGYDAVLPRIGNSVTYFGTAVVRQFEQMDVYTPNTAAGIMNSRDK LRATQILSRHEIDMPATVFVRNRGEVSTAIDMVGGAPVVIKLLEGTQGIGVILAPTKKVA EAIIETLHGTNQQVLIQRFVEESKGTDIRALVVGDRVVAAMRRRAQGDEFRSNVHRGGTV ERVELSPEYAETAVRAAHIMGLRVAGVDMLEGEHGPLVMEVNSSPGLQGIEAATDLDVAG AIIDYVADQAGFPDIDVRQRLAVSTGYGVGEITVHAGSGWVGQSIEDSGLLAKDLQVLTL HRGTSVFPNPADTKVLEEGDRLLCFGKTENMRALIPARARRPKRVRRLPATPILASVAEE APAPEAPADDA >gi|289556567|gb|ADCD01000090.1| GENE 41 44579 - 45031 332 150 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225088897|ref|YP_002660164.1| ribosomal protein S6 modification protein, C terminal domain [gamma proteobacterium NOR5-3] # 1 137 7 142 154 132 47 5e-30 MGWREWVGLPTAHTPWIKAKIDTGARTSALHAFGIERFTRDGAAWVRFEVHPWQTSAADA RTAELPVADLRTVRSSNGEAQERVVVVMPLTLAGRTIEAEVTLTHRDEMGFRMLVGRTAL AAGGLLVDPAASYVGGQPPRGVRRRNRGRA >gi|289556567|gb|ADCD01000090.1| GENE 42 45028 - 46143 879 371 aa, chain + ## HITS:1 COG:VC2282 KEGG:ns NR:ns ## COG: VC2282 COG3608 # Protein_GI_number: 15642280 # Func_class: R General function prediction only # Function: Predicted deacylase # Organism: Vibrio cholerae # 10 367 19 326 362 248 39.0 2e-65 MSRRPTRAPFAFGGVEVPAGRRHELSLPISQLVTGADVTLPVHVLHGREDGPTVWVSAAI HGDEVAGVEIVRRVLERLQPTQLRGTLLAVPIVNVLGVMAGDRYLPDRRDLNRSFPGSAR GSLASRIAHLMMTEVIGRCTVGIDLHTGADRRSNLPQIRCDLEDPQTRALAEAFGAPVLF HARLRDGSLRAAARETGARVLLYEAGEAWRFDEYAIAPGVDGVLRVLAALDMVDPADVGL TEPGPDAVVDAPGPLPGEVPEERTTDVPEATDATGEDTAAVHPDVVDGEQDAPYLVWQST WVRARADGLVHLDVSLGERVSAGDRIGALYNSFGRRLAHVKAELTGVVIGRTEAPLVHRG DALVHIGGWDA >gi|289556567|gb|ADCD01000090.1| GENE 43 46184 - 47407 1031 407 aa, chain - ## HITS:1 COG:Cgl1041 KEGG:ns NR:ns ## COG: Cgl1041 COG0477 # Protein_GI_number: 19552291 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Corynebacterium glutamicum # 34 396 7 371 391 191 34.0 2e-48 MPSAPPPSDPAGSTAAPRPPLWTRPFILVSATYLFVAMIFYTLMTAMALYAVTSFGASDA EAGVVVGAFVLGAVLTRMTTTPATFAWGRRRVLLVALACYVLTTAAYLWADSLATLTAVR LLNGMCFGAAGTVLATAVQRIVPPVRRSEGTGWFSTSMTLAGAVGPMVALQLSTTLGYDA LFWACIGFTGMALLIALFLRVPEPPLTGRFRLHRADVFSAEVAPAAGVALASGFMYGGIL AFMATFAQQQGYPAMVPSLFFLLFAAGTIVGRAVLGVLHDRHGDNAVVYPILAGMAVSYA VLALWREPAGMLAAGALLGLTYGPVVSVFQTIAIKVVRPTEIGVATGTFFLLLDLGTGLG PMVLGAVVAAVGIPVMYLLSGGVGVALLLYYRLVHGGRAIARRPPPA >gi|289556567|gb|ADCD01000090.1| GENE 44 47511 - 47972 732 153 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|239918782|ref|YP_002958340.1| LSU ribosomal protein L9P [Micrococcus luteus NCTC 2665] # 1 153 1 153 153 286 98 2e-76 MAKLILTQEVAGLGTSGDVVEVKNGYARNYLLPRGFATVWTKGGEKQVESLQKARAARAV ANLEDAQAQAAQLQSATVKLERTAGAEGRLFGAVQTADVAEAIEAAGLGSVDKRSITLPA HIKSVGNHEAQVRLHEDVIATVQLQVVAAKAKK >gi|289556567|gb|ADCD01000090.1| GENE 45 48001 - 48240 387 79 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|239918783|ref|YP_002958341.1| SSU ribosomal protein S18P [Micrococcus luteus NCTC 2665] # 1 79 1 79 79 153 100 2e-36 MAKAELRKPKPKSNPLKAAKITEIDYKDVALLRKFISDRGKIRARRVTGVTVQEQRKIAQ AVKNAREVALLPYAGAGRG >gi|289556567|gb|ADCD01000090.1| GENE 46 48366 - 50114 640 582 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MGRRGGPPGEVRPDGEVRGVPCPSRPWGPRPVSAGSERGLVGGRGVPSAATAAGPGVLRC GLAAALLLAAPAAALLGAAEAAVVVPPEAAAGRGAAEAAPLLAAAEATAAATAALGAGDL GRGEPQRRADLVHVQLPAGATVAVPVVVGARPEAALHDHAHALGQRLRHVLRGLAPDRAA QEQRFAVLPLVGLAVERAGRGRDGEVRDGRAVRGEAQLRVGGEVADHGDDGLACHGHSCL RGFCRSVTGSGDPGLLSGVPVGASGTDPMLSDPPDTVRGSLSGDLLLLRTDDLGAQDRLV EVQQTVQLLGGGRLRLEVDDHVDGLGLLLDLVGGLAATPHVDVVDGAAGVRDDLEVLLQG RLHGALVDLRVDQHHQLISTHANPPPLGLRPRSLRGRRFCVLPLRMHPHSSAARRGSRQE YQHCASADEVPPLGGRGVAGACPRSTTTYLGRRTHILCHTPLTFRSIHVRVHVGSAPAVP VRPLPPPSRQQPRVGGADRRRRRRCPRRGGQPSPADRPLVPGHPRHRGGRARHDSDGLWL GFDPLERHHGQQHLLLPDRQCAHRLHGDGCDRLHPGAEERGG >gi|289556567|gb|ADCD01000090.1| GENE 47 49203 - 49508 505 101 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|239918785|ref|YP_002958343.1| SSU ribosomal protein S6P [Micrococcus luteus NCTC 2665] # 1 101 1 101 101 199 100 5e-50 MRAYELMVLIDPEVDERTVEPTLKKYLEVVTNAGGTVDNIDVWGRRKTAYEIQKKSEAIY VVVNFQSEPAATQELDRLLNLNETILRTKIIRPEEQKITAE >gi|289556567|gb|ADCD01000090.1| GENE 48 49768 - 50412 259 214 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289706696|ref|ZP_06503044.1| ## NR: gi|289706696|ref|ZP_06503044.1| hypothetical protein HMPREF0569_1484 [Micrococcus luteus SK58] # 29 214 1 186 186 259 99.0 5e-68 MSESTSAAPQPSQSVPSRRRVASSLAWAVPTVVAAAAAPAEAASPPPRIDRSFLVTRGTA GAGPGTTVTACGSGSTRLSVTTDNSTYYYRIANVPIGSTVTDVTASILVQKSVVDKLSNG LTWTSVTTDWSTPTREVSGTGSPVLYTDNNIQYYRYVSRLLTPVPAPVSGTITLPLIGWY SNCSTTLAGVSVNGRGSAVVNGKTLVQIGAYRTL >gi|289556567|gb|ADCD01000090.1| GENE 49 50482 - 52035 1112 517 aa, chain - ## HITS:1 COG:Cgl1463 KEGG:ns NR:ns ## COG: Cgl1463 COG1362 # Protein_GI_number: 19552713 # Func_class: E Amino acid transport and metabolism # Function: Aspartyl aminopeptidase # Organism: Corynebacterium glutamicum # 40 503 6 407 420 382 48.0 1e-106 MQRARLRARVAGRGDGARYGRGMTPVTRDTVAEMPAHLRDLAEFVTASPSSYHAAEEVAR RLEAVGFTRLDETVDFPSAPGGYVVVRDGAAVAWIVPTGAGALGRHEGAEVRAAGPDEAG PSAGVVPVFRVLGAHTDSPGFKLKPNPATVTADGWVQAGVEVYGGPLLNSWLDRELRFAG RLALDDGTQVLAATGPVGRIPQLAIHLDREVNEGLTLKRQRHTNPVVGALAPRGEGAGEA EADGLAARVPGDVLTALAAAAGVDPAAVRGHDVVVADAQAPGLFGLAGEFFASGRLDNLS SVHAGLVALEELAREHGGAEGAIAYEGTVAGGVAGEAAGAPVIPLLAAFDHEELGSASRS GAAGPLLEEVMGRVLEVLGVAGQGRARAIAGSWLLSADAGHLVHPNYAERHDPVNHPRVN HGPLLKINANQRYATDAGGGAAFARWCGVAGVPFQEFVSNNDVPCGSTIGPISATRLGIR TVDVGLGLLSMHSAREMCGVRDVEHLTAAAREFFRGV >gi|289556567|gb|ADCD01000090.1| GENE 50 52077 - 52409 159 110 aa, chain + ## HITS:1 COG:no KEGG:Mlut_23280 NR:ns ## KEGG: Mlut_23280 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 110 4 113 113 171 98.0 7e-42 MIAVAVGVFLLVAWTVGGWAIVRMGFTRDGDAARTPAHDDGAARPVHPGAAADPATDPHV MWREQMKAATAASGAQCVCPPPPREDGAAAAGTTAPPSSPDCPIHRWDYA >gi|289556567|gb|ADCD01000090.1| GENE 51 52400 - 53923 1102 507 aa, chain - ## HITS:1 COG:Cgl2929 KEGG:ns NR:ns ## COG: Cgl2929 COG5650 # Protein_GI_number: 19554179 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Corynebacterium glutamicum # 104 499 84 481 486 191 32.0 4e-48 MRPAPAHAATPSEPPTHAADGAPCDAVADPGAPAGRSADSAPSGTLPAPGERGGRFQLAG GLAANGPGRGTGSWAGPAALTGLLVALAAVVTVLQKSPCLLHGWGAPDVYYAGCYSDWAA LYDGRGFAADPWAPFRAGSTFEYPVLMSVVGSVAAWITQALPFSPEQGTVVFWLVNLGFV VVLWAVVAVLTVRMAGCRWTDGLMVAVAPGIVLAGTINWDLWAVALLACGMYAWSRGRSL TAGVLFGIGAAMKLYPLLILGPLLILAVRSRRWRPFLLAAGGTVAAWAAVNVPLMAVNFQ AWSVFFTFSGERGPGLSSVWHAWDVTAAQAGWAFVPEDSLTLLAYGTFAVCCLGIFVLGV RVRHTPRLAQLTFLVVAAFVLTNKVYSPQFVVWLIPLLALALPRWRDFWVWQTVEALHFF AVWMYLAKGVAETPPQHSMDDSVYVAAILAHMLAVLWLCGRVVWEMLHPAEDLVKRDHGG HPDTDPLAGAYAGPARGRSGRPAAVQA >gi|289556567|gb|ADCD01000090.1| GENE 52 53920 - 54153 121 77 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRDVAQLPTPAMATRMGLVATVWFSPRLSGTGAGTRRAQGGPHRSAGRSPGDQPRQSTTD DGGPARPVSGRLPRMGA >gi|289556567|gb|ADCD01000090.1| GENE 53 54092 - 55177 988 361 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163782670|ref|ZP_02177667.1| 50S ribosomal protein L20 [Hydrogenivirga sp. 128-5-R1-1] # 6 361 5 368 368 385 55 1e-106 MATNPIRVAIAGVGNCATSLIQGVEYYREAKATDTVPGLMHVQFGDYHVSDLEFVAAFDV DAKKVGLDLSEAITASENNTIKIADVPHADVTVQRGPTLDGLGKYYAETIEESEAEPVDV AQALRDAEVDVLVCYLPVGSQLATEHYAQAAIDAGVAFVNALPVFIAGTPEWAEKFTAAG VPIVGDDIKSQIGATITHRVMAKLFEDRGVTLDRTYQLNVGGNMDFKNMLERERLESKKI SKTQAVTSNTSAQLGEKDVHIGPSDYVAWLDDRKWAFVRLEGRNFGDAPVSLEYKLEVWD SPNSAGVIIDAVRAAKIALDRGIGGPILSASSYFMKSPPVQHNDDAAHELVEAFIRGDIE R >gi|289556567|gb|ADCD01000090.1| GENE 54 55284 - 57215 1417 643 aa, chain - ## HITS:1 COG:BS_yrhL KEGG:ns NR:ns ## COG: BS_yrhL COG1835 # Protein_GI_number: 16079768 # Func_class: I Lipid transport and metabolism # Function: Predicted acyltransferases # Organism: Bacillus subtilis # 1 631 44 628 634 193 26.0 7e-49 MFFVLSGFLITTGLVRGVDAGRGVALGTFWMKRVRRLIPAMLMALVGTTALAWLAVDEFP AGLGRQWFGALTYTSNWVMILEGGDYFNRASPPLFEHLWSLAIEEQFYILWPLLLWGLLL LTWPPRSTVNSGRVADRRRILAVAVAAVASAAWMAWGSWHGFEQARLYFGTDTHAFGLLF GACVAIGLAHVPRPEHGGPEPRTSATRVAVAWGAVAVLAAGFALVDGGHASTYRGVLAGL SAVVAFIVWHVVQGDRRDSLSRALGNGFLRWWGRRSYAAYLWHWPLLVIMRVMVPVDAPG WVEPVAAGAILLLTALIADLSTRLIEEPILHEGFTGAFGRWGAAARRAFTGGAGPIGRLA AAATALGLVAVPAAAVAAVVHSPAQTQLEQDIAQAEESLKAAQAAQQAARESRAAEQSKR AEASASASPGSAAPGDAESSAGATSSPGSSAEPSGLGLGDPAVTRPTYSKEQLTAALPPS ELGPDVTLIGDSVSLSAAPTLMEQLPGMLLEAEVGYQIWDAADELEKLKADGQLSDVVVV ALGANGTTHRGDWEKILAAVGEDRLLVLVVPHGPMDWIADVQVQMEAQAKAHPDRIVLAD WDAAAKQHVTDFSADGVHPRADGQAMYAQLVRLTIEDRLGARR >gi|289556567|gb|ADCD01000090.1| GENE 55 56646 - 58076 402 476 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MGQADRHARAEQQAEGVGVRAEVEAGLLEPVPRAPGHPRRGGHGRDRDREDTTSVRHPPR VHRAARRPGEQEQPPEEQGPEDVELLLDRQGPQVLEQRRRGAVEVVPALEDHHPVAGVGQ GAEPLATQACGELVHRQPRERGGAHERHQHGRDESSDALHPEGAQRHAPARVHTTDQAGG DEEAGEHEEHVHAHEPAAQEGGPGVEDEHGEHRDPPQPVEGGDPSGAATDPRADLDGGHA VLGRQGMAGRGRGALVGTHSGRSSHPNLDGPKPPAIPTRPTALGAVSGGIPLPKHRIPPP EAGGGRRSVVAQRLDELVLGHGGAALDVELAGPLRELVLGPVLVGAGLAATLGDLVPAVP GGGVGDPRGLLLARALAAQRLIDLGVLDVGGAGAHGGTVLLGLLLSHAASVVPARRRVEG PPRRLSPAGPPAARPTSAAAPPRPRPAHAGPRRGATRAGGCTPGPPPGPGGSPAAP >gi|289556567|gb|ADCD01000090.1| GENE 56 57919 - 59370 1312 483 aa, chain - ## HITS:1 COG:MT4026 KEGG:ns NR:ns ## COG: MT4026 COG0617 # Protein_GI_number: 15843539 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA nucleotidyltransferase/poly(A) polymerase # Organism: Mycobacterium tuberculosis CDC1551 # 22 477 23 477 480 489 58.0 1e-138 MDLTTATHALPPGFPADATLPAVVVELGRRFEAAGHELSLVGGPVRDLFLGRPSLDLDFT TDADPDASEAVGAGWADATWDVGRRFGTIGFRKAGWQLEVTTYRAEQYDPASRKPQVAFG DSLEDDLLRRDFTVNAMALRLPALELVDPFGGMQDLHAGVLRTPGTPEDSFSDDPLRMMR AARFASQLGFAVAPEVEQAMTAMAERITIISAERVREELVKLVCGAHPRAGLDLLVRTGL ADHVLPELPALQLESDEHHRHKDVYAHSLTVLEQAMELEGEYAPSTPDPVLRLAALLHDV GKPATRRFEKGGAVTFRHHETVGAKLVRKRLRALKFDNDTIKAVARLVELHMRFYGYGDA GWTDSAVRRYAHDAGDLLPRLHALTRSDVTTRNRRKAERLAHAYDDLERRIAEIAEAEEL AAVRPDLDGQQIMALLGIRPGPVVGRAYNHLLEWRLDEGPHEPAEAEAELRRWWAEQPEA QQD >gi|289556567|gb|ADCD01000090.1| GENE 57 59436 - 60047 503 203 aa, chain + ## HITS:1 COG:ML2698 KEGG:ns NR:ns ## COG: ML2698 COG0494 # Protein_GI_number: 15828458 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Mycobacterium leprae # 43 191 58 206 251 126 47.0 3e-29 MARPDPSAHRGAPLPSALGAWRRRPQPPLRPVTPAPAGPRSAAAASLPTVEEVSAGGVIV REHDGGLEVAVIARYNRGGRLEWCLPKGHPEGEEDHRQAAVREVEEETGIAGHILEPLGA IDYWFTVARHRVHKTVHHFLLRATGGELTTENDPDHEAVDVAWVRLEDVARRLSFANERR IVDLARQVVDQHFPPGGARGPRP >gi|289556567|gb|ADCD01000090.1| GENE 58 60262 - 61938 1485 558 aa, chain + ## HITS:1 COG:Cgl3028_1 KEGG:ns NR:ns ## COG: Cgl3028_1 COG0728 # Protein_GI_number: 19554278 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein, putative virulence factor # Organism: Corynebacterium glutamicum # 1 556 87 617 640 132 26.0 1e-30 MASGTLLSRVLGLVRATLVTVAIGLSADMADIFEIANSLPNVIYLLLVGGVFNVVLVPQL IKHARDADRGADYTSRLMTLGTLVMLAGTVVVMLAAAPLMTALTRGWSPEKLEMATVFAL WCLPQVFFYGMYALVGQVLNANGRFGAYMWAPVLNNVVAIGAIVLYLGMFGAYRAGDDLA GWTSAQTVVLAGGHTLGVVLQAVILFLPLRGLGLGLRPRFGWKGIGLRDTGRIAGYTLIT MVATNVVLLLCQRYVTSATEARDRGELRIPGTETWSAEMAQAAIPGVAAYNMAMLMAVLP HSVFVLSLATVLFNRLARAMGRQDMSAVRRTTAQGLRAFTVPLMFCLAGVVVLAGPLGRV FGSTAETAMVAGVAVGSVLLALALSIPFRSGSFYLLRVFYAAEDAKVPMVVQVSGSLLML LLSWAGAMLLPLWSMALWVAVASSVSYVYQFVLTHVLTVRRFGDYGLASVLRAHVQTGLA ALAAAAAGVVVVWLLGGYTGGFAWNSIGTALLTCAVAAVAMGPVYLMVLRAMRFPELDDA LRPLVARVPALGRLLRVG >gi|289556567|gb|ADCD01000090.1| GENE 59 62004 - 64142 1316 712 aa, chain + ## HITS:1 COG:NMA0905 KEGG:ns NR:ns ## COG: NMA0905 COG3468 # Protein_GI_number: 15793871 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Type V secretory pathway, adhesin AidA # Organism: Neisseria meningitidis Z2491 # 150 371 1011 1243 1773 74 31.0 5e-13 MPQPIAVGAVLGGRYRITQHVVTSADQDIVFLGTDQVLNRRVTVLVASRENATQVASSAR ELATGERTDDVQVLDLGLSEGRTYLIAGGDPDPDVLLGLAYPQELYVEPFQTDSLGSELF GESRTGDPHAYDDDEAYYTDLDRRLRADEDEAQRRPGFLNRLSERLAERVRPSDGTAAKA AAGASALAAADAATRKQQEERERAEREAAERAERERKEAEERARAEREAAERAERERKEA AERAERERREAEERAEEERRAEAERARRQAEQEAEDRAAREREAEQARLAAEREEAERRE LERRTEARRRAEEERAREAERREAEKRAAQEREAAEREAEKREAQAGTAALPAVAAGAAA AQTTDADADGATPPVEPVEPVEPVAAEKTDAPEPVAPDTEAIPVRRQRPVPRRAIVAESA PPVHEESRSTAAPVAAGAATGATAAAAGSTSAAAAPDALAAPATTGGDDGATVADPGDGN GRTRGGGPLALLLVLGLLAALVVGGVLLAQNLRGGPAPQAAAAAASSESESASSESASDT PSPSESTSPSPTPTSESAAAAPQPVQALRSVPDLPEHEAQHDADLSNLIDGDPTTVWRTF AYARPNFGGYVESMNLVVQLEERTEVNEVTLQSTGATGGAWFAYIADSPEGANAQEIGNG TFDQDTVSIPVPFEGTEAEAEYVIVSLTSLPQLEGTTSDLPFGLRLGEIAVR >gi|289556567|gb|ADCD01000090.1| GENE 60 64234 - 65292 694 352 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 [Streptococcus pneumoniae SP6-BS73] # 29 331 1 303 306 271 47 5e-72 MAPPLSWRSAHHPDPLEEPVAPTAQDPSVHNVVIVGSGPAGYTAAIYTARADLSPVLVAG AVTAGGELMNTTEVENFPGFPEGVQGPELMANLEAQARRFNTEVVYDDVVQADLTSNPKV LTLGDGTQLRTHAVILTTGSAYRKLGVPGEERLSGHGVSWCATCDGFFFREQEIAVVGGG DSAMEEALFLTKFASKVTVLVRKDELRASKVMAHRAMENEKIEFRWNTEVTEVTGDDKVN TLRLRDTRTGEASTLDVTGLFVAIGQDPRTDLVQGQVELTEHGTIRIDHPSSRTSQPGVF AAGDVTDHTYRQAITAAGSGCVAAQDVEHYLATVADVEEAAPAGPESDAVPA >gi|289556567|gb|ADCD01000090.1| GENE 61 65390 - 65713 333 107 aa, chain + ## HITS:1 COG:slr0623 KEGG:ns NR:ns ## COG: slr0623 COG0526 # Protein_GI_number: 16331825 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Synechocystis # 2 106 3 107 107 114 50.0 5e-26 MSTITVTDADFDQKVLQSELPVLVDFWAEWCGPCRMLGPVLEDMAVEHEGKAVIAKLNVD ENPAIAARYGVTSIPLVVGFQNGEKVVESVGAKPKAALEKEFSALLG >gi|289556567|gb|ADCD01000090.1| GENE 62 65831 - 66775 676 314 aa, chain - ## HITS:1 COG:ML2706 KEGG:ns NR:ns ## COG: ML2706 COG1475 # Protein_GI_number: 15828464 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Mycobacterium leprae # 40 301 60 330 335 261 57.0 1e-69 MPTVKAPSKRATSATSSRKEPADSTADPVATEGTVSADIAVLREIPVGDIHPNPRQPREV FDEDHMAELVTSIREVGILQPIVVREVDGPTPYELIMGERRWRATQKAGLDTIPAIVRQT PDQDLLRDALLENLHRSQLNPLEEAAAYQQLMEDFACTQEELSQRIGRSRPQISNTLRLL KLPPLVQRRVAAGTLSAGHARALLGLTDPSDMERLAQRIQSEGLSVRATEEAVAQLQGGL RPGRTPRRSTDDARHERLDHYATALTSRLDTAVKITLGARKGRIAIDFTTVEDLNRIMDL IQDGEDGKGKGKKS >gi|289556567|gb|ADCD01000090.1| GENE 63 66660 - 67247 190 195 aa, chain + ## HITS:1 COG:no KEGG:Mlut_23410 NR:ns ## KEGG: Mlut_23410 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 195 1 195 195 243 94.0 2e-63 MSADTVPSVATGSAVESAGSFLDDVAEVARLLGAFTVGMAGRPLVGRAAGASSESAEKNT STGRCAGREARFDEVGPAFVADVAFRPVAAVDFPACVVRPAVFRCEADGAGSLDSPGVSV VAVLRVDVVVASAAAAAFGPLFTGTAECLGEEASAFSSGASTVLWIRAPRPRPRPPRRLV FNGSSCSEWVCDQCR >gi|289556567|gb|ADCD01000090.1| GENE 64 67201 - 67590 61 129 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MILIPPARRRGLAFHVKRVNLEREHEEVLRIAAAPFRSAPTRSVPRETLTLAAGAVRAPA FCHPGPMRTSHPRTEARTSPRPLHVSGPRAPPGGQGQSTLRSVFPPPGTIETRPLTYTDR RPTHCRRTR >gi|289556567|gb|ADCD01000090.1| GENE 65 67596 - 67850 134 84 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVKQRSIRELRGCAEALTAKRRVGRAHPFDDSSVHITPRGSGTSASLLVRHCASDEAHHH AGSQRSEYRPHGGPIGRGANEKQT Prediction of potential genes in microbial genomes Time: Thu May 26 08:15:31 2011 Seq name: gi|289556556|gb|ADCD01000091.1| Micrococcus luteus SK58 ctg1119142780284, whole genome shotgun sequence Length of sequence - 6834 bp Number of predicted genes - 10, with homology - 9 Number of transcription units - 8, operones - 2 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 43 - 264 152 ## COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes 2 1 Op 2 . + CDS 328 - 552 73 ## 3 2 Op 1 2/0.500 - CDS 741 - 1652 555 ## COG1230 Co/Zn/Cd efflux system component 4 2 Op 2 . - CDS 1652 - 2026 214 ## COG0640 Predicted transcriptional regulators 5 3 Tu 1 . + CDS 1982 - 2248 122 ## COG0640 Predicted transcriptional regulators + Term 2458 - 2489 4.1 6 4 Tu 1 . - CDS 2381 - 3685 709 ## gi|289704714|ref|ZP_06501138.1| hypothetical protein HMPREF0569_0118 7 5 Tu 1 . + CDS 4385 - 5455 824 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 8 6 Tu 1 . - CDS 5479 - 5658 79 ## Mlut_20750 transcriptional regulator 9 7 Tu 1 . - CDS 5792 - 6352 355 ## COG0583 Transcriptional regulator 10 8 Tu 1 . + CDS 6424 - 6832 337 ## COG1279 Lysine efflux permease Predicted protein(s) >gi|289556556|gb|ADCD01000091.1| GENE 1 43 - 264 152 73 aa, chain + ## HITS:1 COG:Ta1341 KEGG:ns NR:ns ## COG: Ta1341 COG1249 # Protein_GI_number: 16082328 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes # Organism: Thermoplasma acidophilum # 1 71 397 467 469 59 42.0 1e-09 MVTDADTGRIIGITALAQDAGDLAAAGVYMLEAGMTTSQVANLWSPYLTMAEGLKLTAQA FTTDIAKLSCCAA >gi|289556556|gb|ADCD01000091.1| GENE 2 328 - 552 73 74 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MGADQPYLLAPLRIGPATTGEFSRCKNSRPRPISGRLHDLYVLDPTRTALDDAMTALRRR HEAAVRLGRVTAPP >gi|289556556|gb|ADCD01000091.1| GENE 3 741 - 1652 555 303 aa, chain - ## HITS:1 COG:lin2720 KEGG:ns NR:ns ## COG: lin2720 COG1230 # Protein_GI_number: 16801781 # Func_class: P Inorganic ion transport and metabolism # Function: Co/Zn/Cd efflux system component # Organism: Listeria innocua # 19 299 21 301 303 177 34.0 3e-44 MGAGHSHAPATGHAGGRYRRRLAGAFALTAGFFLIELVAGLVSGSLALLSDAGHMAADVV VLGAALLATRIASRPDSTGRRTYGSYRAEVFASALAVLAMLAVGVYVVVEAISRLGDAPE VASGAMLAVGFAGLVINIISMLLLRSGAKDSLNVKGAYYEVIADAAGSVGVMVAGVLIIL TGQPIWDVVVAALIAVFVIIRAVVLGRQVIAVLGQHAPEGVDPEDVAGDLDAVEGVEEVH DLHLWTLTSGMNVATAHLVADQGADHGAVLAGARRVLRDRYGIAHATLQVEGAGSDGCHD LSW >gi|289556556|gb|ADCD01000091.1| GENE 4 1652 - 2026 214 124 aa, chain - ## HITS:1 COG:DRA0071 KEGG:ns NR:ns ## COG: DRA0071 COG0640 # Protein_GI_number: 15807739 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Deinococcus radiodurans # 7 119 13 124 125 97 50.0 4e-21 MSVTPLDSCQVTAVHPEKVALTRERIPDEREAGRLAGLFKLLGDPRRARVLYALLEAGEL CVCDLAASVDVAEASVSQVLRVLRTAGVVENRREGRMVYYRLADGHVRMLLDVSREHARH EGQG >gi|289556556|gb|ADCD01000091.1| GENE 5 1982 - 2248 122 88 aa, chain + ## HITS:1 COG:Cgl0882 KEGG:ns NR:ns ## COG: Cgl0882 COG0640 # Protein_GI_number: 19552132 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Corynebacterium glutamicum # 42 85 1 44 119 79 88.0 1e-15 MDGGDLTRIQRRHTHATTIHLCRYQQREPHTRGQQVLYGQRMLTIASRLDVMNRLGRAMA DPTRSRILMTLLEGPSYPAVLARDLGRV >gi|289556556|gb|ADCD01000091.1| GENE 6 2381 - 3685 709 434 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|289704714|ref|ZP_06501138.1| ## NR: gi|289704714|ref|ZP_06501138.1| hypothetical protein HMPREF0569_0118 [Micrococcus luteus SK58] # 1 434 32 465 465 787 100.0 0 MLTFEGPIGPVPADRAFPRTWSLEGRSSEHVHEWADLPRLRELRLRYAHPEHLAQLAGFR VEDLDMFHGTGLPAGSVWPELPTVVRAHWALMPVVALQGLNAPALEEVMVDGVHECLALE DLLASSPVKDLQVYDVRQVPLPQAVWDAAAGIEQVNWGGDLKANLWLMELAVGPVSRLPA GVRTPERRLMKRGLGVRNASMDAATWTAGDAGSDAVRAVLPAPSAEVADLLQRMGVADPG VFWGGLLSVRWPCLPEAGVRIALEDGATVVRGPRVEVEDTVALLAWWCSSPEVLASVVDV MVTAGLAGEAFAGGAPAVVPVSRLVTGTSVASIEKLEERTYVLTMPMQPVPVTQMLESRG LEHSGHTWDQILELGFPAEVRRVELDPEADVFMAYGTRPALKKVQVVLDRLTQDADELVA CLERIKASGDAIDC >gi|289556556|gb|ADCD01000091.1| GENE 7 4385 - 5455 824 356 aa, chain + ## HITS:1 COG:Cgl1902 KEGG:ns NR:ns ## COG: Cgl1902 COG0454 # Protein_GI_number: 19553152 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Corynebacterium glutamicum # 176 337 166 327 341 67 32.0 4e-11 MPDIIEFPLPASSDDPHWRAYCQLGDEYNHELIGTTEWDETPTDALIQATAETDHTLRRY LAYVDGEAVGYARVLVNHVDDPDAAALNVYVHPRHRGRGHGRALAERLVLDTAGLTRFET WPLTPRPVAGQRALTPPNGAGAVPAEHPGVRLAQSYGFALVQIERVSRYDFADPGIDPAV ALAEAERASSGYELHAWEGAADTSLQDDLAVLKARMATDMPSGERTVVEQVWDAARVRRM DEQILTTGRLFRAVARYRATGRIVALSELVAPRSRPDGLIDQWDTIVLPEHRGHRLGMRV KAANLIAVREALPEARAIITWNAEENRHMLDVNEALGFRPVLAEASMEAPAPLRRR >gi|289556556|gb|ADCD01000091.1| GENE 8 5479 - 5658 79 59 aa, chain - ## HITS:1 COG:no KEGG:Mlut_20750 NR:ns ## KEGG: Mlut_20750 # Name: not_defined # Def: transcriptional regulator # Organism: M.luteus # Pathway: not_defined # 1 59 233 291 291 100 98.0 1e-20 MLVNAQAVEDVRAGRLVRVPGLDDVLVPLYWQAATLPVTRLVRLTRAVREAAQRTLERG >gi|289556556|gb|ADCD01000091.1| GENE 9 5792 - 6352 355 186 aa, chain - ## HITS:1 COG:MT2039 KEGG:ns NR:ns ## COG: MT2039 COG0583 # Protein_GI_number: 15841463 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Mycobacterium tuberculosis CDC1551 # 5 174 10 177 303 142 49.0 5e-34 MNLDQLQALRAIADEGSFEAAAYELGVSASAVSQRIRTLEREVGQVLLRRGTPCEPTEAG VGLVRVARHMRVLEQEAWAGLGRTAAGRSVTSLAVPADVLGTWFGPVLAEAADWDDTVLD LHVEDQDHSARLLRRGEVLAAVTTEPQPVQGCAAESLGSMRYVPLVAPALLARHAAATSS TSARCP >gi|289556556|gb|ADCD01000091.1| GENE 10 6424 - 6832 337 136 aa, chain + ## HITS:1 COG:AGc1690 KEGG:ns NR:ns ## COG: AGc1690 COG1279 # Protein_GI_number: 15888266 # Func_class: R General function prediction only # Function: Lysine efflux permease # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 7 135 8 138 202 109 51.0 2e-24 MWTLAGTGLLTGLALIVAIGAQNAFVLRQGVRREHVGAVVLVCMASDAVLILAGTAGVGA LVQAVPWLLEVLRWGGALYLLWFAASSLRAALRPQGLVAEQAPRTAGSVIATTLALTWLN PHVYLDTVVLLGSLAN Prediction of potential genes in microbial genomes Time: Thu May 26 08:15:54 2011 Seq name: gi|289556552|gb|ADCD01000092.1| Micrococcus luteus SK58 ctg1119142780288, whole genome shotgun sequence Length of sequence - 2639 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 1, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 19/0.000 + CDS 3 - 917 819 ## COG0772 Bacterial cell division membrane protein 2 1 Op 2 4/0.000 + CDS 1039 - 2352 1095 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 3 1 Op 3 . + CDS 2349 - 2637 194 ## COG0515 Serine/threonine protein kinase Predicted protein(s) >gi|289556552|gb|ADCD01000092.1| GENE 1 3 - 917 819 304 aa, chain + ## HITS:1 COG:MT0020 KEGG:ns NR:ns ## COG: MT0020 COG0772 # Protein_GI_number: 15839391 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Mycobacterium tuberculosis CDC1551 # 1 269 185 448 469 247 49.0 2e-65 PGEIAKITLAIFFAGYLSANRDLILLAGRRVGPVTFPRARDLGPLLAGWLLALGVLVFQR DLGSALLFFGMFMAMLYIATSRASWILLGLGLIAFGAALAFLFMPHVTARFEIWLRAFDP EIYHRDFGGSYQVVQGLFAMASGGLMGTGLGAGNPTQVPLSFSDMILTAIGEELGFVGLA AVLVLYLLLVTRMMRAALGVRDAFGKVLASGLAFTMAWQVFVVMGGVTLVLPLTGLTTPF LAAGGSSLLANWIIVGLVLRISNAARRPVVVDGMVNASGPGAGHLDPGTALPAAAVPPGG GEER >gi|289556552|gb|ADCD01000092.1| GENE 2 1039 - 2352 1095 437 aa, chain + ## HITS:1 COG:ML0018 KEGG:ns NR:ns ## COG: ML0018 COG0768 # Protein_GI_number: 15826881 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Mycobacterium leprae # 4 412 47 462 492 233 37.0 6e-61 MFLEFGAPRGPILVDGEPIAESVPSDDAYHYQRVYHETELYAPLTGFYSLTYGTDGLEAA MNEQLSGTPTSQFVDRAMEIITGATPEGDQVELTIDPELQRLAYDALPDGVRASAVVTDP TTGEILAMVSKPGFDSNALSSHSPAEAQSAMAAIDQIPGASAYRNRAAEQLVSPGSTFKL IDAVAMLESGDYTPDGTVDIPAAWTLPGTTTELPNYDGSPCNTGGVRPSRGRCAVCNTPF AMAAVELGQDRIREVAERFGFNDSFDYPLPVTGSVFPSDLDDAALAQSSIGQRDVQATAL QMAMVAAGIANDGVVMEPQLIKAVRRSDLTTVQEFSPRERGRATTPEVAGQVSDMMVSAV EDGILGSVQSDTVRIAAKSGTAEVGDTGNVHSWITGFDASENPRAAVTIVVEDEPPGVGH QTIVSGMKAIMEAVVTE >gi|289556552|gb|ADCD01000092.1| GENE 3 2349 - 2637 194 96 aa, chain + ## HITS:1 COG:MT0018 KEGG:ns NR:ns ## COG: MT0018 COG0515 # Protein_GI_number: 15839389 # Func_class: R General function prediction only; T Signal transduction mechanisms; K Transcription; L Replication, recombination and repair # Function: Serine/threonine protein kinase # Organism: Mycobacterium tuberculosis CDC1551 # 1 96 1 101 431 117 59.0 4e-27 MRPTSGITLGGRYQLTDRIAIGGMGEVWKARDKVLGRITAVKILKEEYTGDPNFLRRFRA EAQHTALLNHPGVANVYDYGEEKGSAYLVMELVPGQ Prediction of potential genes in microbial genomes Time: Thu May 26 08:15:55 2011 Seq name: gi|289556551|gb|ADCD01000093.1| Micrococcus luteus SK58 ctg1119142776949, whole genome shotgun sequence Length of sequence - 1017 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 214 - 1014 933 ## COG2801 Transposase and inactivated derivatives Predicted protein(s) >gi|289556551|gb|ADCD01000093.1| GENE 1 214 - 1014 933 266 aa, chain - ## HITS:1 COG:yi22 KEGG:ns NR:ns ## COG: yi22 COG2801 # Protein_GI_number: 16132094 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli K12 # 4 266 39 301 301 541 99.0 1e-154 MTGLDGRRSRHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRI MRQNALLLERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDR EALHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARML GLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSA LGYRSPREYLRQRACNGLSDNRCLEI Prediction of potential genes in microbial genomes Time: Thu May 26 08:16:04 2011 Seq name: gi|289556526|gb|ADCD01000094.1| Micrococcus luteus SK58 ctg1119142780347, whole genome shotgun sequence Length of sequence - 23611 bp Number of predicted genes - 23, with homology - 21 Number of transcription units - 11, operones - 6 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 1034 643 ## Mlut_16390 hypothetical protein 2 2 Op 1 . + CDS 1193 - 1669 433 ## COG1051 ADP-ribose pyrophosphatase 3 2 Op 2 . + CDS 1717 - 2814 588 ## Mlut_16370 hypothetical protein 4 2 Op 3 . + CDS 2898 - 4136 1238 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase 5 2 Op 4 . + CDS 4129 - 5049 771 ## COG2326 Uncharacterized conserved protein 6 3 Tu 1 . + CDS 5177 - 5761 525 ## COG0693 Putative intracellular protease/amidase 7 4 Op 1 14/0.000 - CDS 5875 - 6162 302 ## COG1722 Exonuclease VII small subunit 8 4 Op 2 . - CDS 6159 - 7472 963 ## COG1570 Exonuclease VII, large subunit 9 5 Op 1 . + CDS 7664 - 8752 937 ## Mlut_16310 hypothetical protein 10 5 Op 2 . + CDS 8806 - 9912 393 ## PROTEIN SUPPORTED gi|227371337|ref|ZP_03854821.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; SSU ribosomal protein S1P 11 6 Tu 1 . - CDS 10071 - 11666 1496 ## COG0471 Di- and tricarboxylate transporters 12 7 Op 1 . - CDS 11910 - 14285 1218 ## COG1322 Uncharacterized protein conserved in bacteria 13 7 Op 2 19/0.000 - CDS 14276 - 14950 406 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 14 7 Op 3 . - CDS 14947 - 16173 889 ## COG4585 Signal transduction histidine kinase 15 7 Op 4 . - CDS 16170 - 16964 638 ## Mlut_16230 ABC-2 type transporter 16 7 Op 5 . - CDS 16961 - 17932 825 ## COG1131 ABC-type multidrug transport system, ATPase component 17 7 Op 6 . - CDS 17978 - 18340 127 ## 18 8 Op 1 . + CDS 18161 - 18430 129 ## Mlut_16210 heat shock protein HSP20 19 8 Op 2 . + CDS 18351 - 18611 136 ## COG0071 Molecular chaperone (small heat shock protein) 20 9 Tu 1 . - CDS 19228 - 19851 101 ## RMDY18_05730 UDP-N-acetylglucosamine enolpyruvyl transferase 21 10 Op 1 . + CDS 19510 - 20595 940 ## COG0012 Predicted GTPase, probable translation factor 22 10 Op 2 . + CDS 20641 - 22359 2091 ## Namu_2679 hypothetical protein + Term 22434 - 22476 -0.9 23 11 Tu 1 . + CDS 22514 - 23263 356 ## + Term 23314 - 23366 2.4 Predicted protein(s) >gi|289556526|gb|ADCD01000094.1| GENE 1 2 - 1034 643 344 aa, chain - ## HITS:1 COG:no KEGG:Mlut_16390 NR:ns ## KEGG: Mlut_16390 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 344 1 344 611 387 97.0 1e-106 MDTPQDPPRRDDPSGGPVEPAVDAALDRVHALLRQARVTAAPDTPSALDARGWWELSLEA ALRDEPRESARLADSGLAALVPGQDDVRLALLRALAVAAGQVGDEAALTRWVEARAALLR HLGRPRQAGLESQLGAALVRDPDTVEAAVLAGVVEDEPGAPGEDPGDTVLPEAALALAVH RVHTGDLDAALELARRVIAVLDGLRAAGALLPTGSWSSAHLLLARLHLWRGEHAEADAAA AVVTALPAARAVLASATTVRAIAAHELDRPTAALDLALEAAERMAAVGLRRGAASAAALA GRVAGDLDGYEEVAVAAWELASVHAEKAEAPEASSLSYWWAHQL >gi|289556526|gb|ADCD01000094.1| GENE 2 1193 - 1669 433 158 aa, chain + ## HITS:1 COG:MTH1315 KEGG:ns NR:ns ## COG: MTH1315 COG1051 # Protein_GI_number: 15679315 # Func_class: F Nucleotide transport and metabolism # Function: ADP-ribose pyrophosphatase # Organism: Methanothermobacter thermautotrophicus # 35 144 20 119 135 58 34.0 6e-09 MSTTPAAPDAAGVHPAGPFQTRAGAYALIVDGGRVLLSSWQGPEFLQWTLPGGGIELGES PEEACLREVWEETGHTAELTGLLGVTTGTIPVEKRLRGEPLPLLTVQVLYTARITGGVLR PEVGGSSTDARWFDLAELSELRTASWVTEALARAGVAT >gi|289556526|gb|ADCD01000094.1| GENE 3 1717 - 2814 588 365 aa, chain + ## HITS:1 COG:no KEGG:Mlut_16370 NR:ns ## KEGG: Mlut_16370 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 11 365 28 371 371 406 89.0 1e-112 MLSLALGTCARQADAPPTPSASGTPITVVHGGEGLEAAVAAVLARHLRLHGHAVADEDGV AVEQPAWSAAGGDTVAVVDTLALTAAADPAAALPSPPPPTSTPSSTPTGTEAGPSADAVP TPSATASTPAPSPTALPVGDPAADAPAAGRVLETLLSEETAAAGTPQDEVPAVLSSTAGV LRLTAVVTQTTAARLELESITDLNGRCESLTAVAPPPLTAAADADAATALRARLDRLAGC RPETWLADTEDPGAAVVADEAQVALLTGTDPEIDANTLVPLEDDGRVLPEGRLTAVGSAA TLDDDAERRIAEVMSALDGDGLRELERLTTGADPLPVAKAAQYWLVDHGLEDAPEDWFVP RGSWF >gi|289556526|gb|ADCD01000094.1| GENE 4 2898 - 4136 1238 412 aa, chain + ## HITS:1 COG:MT0351 KEGG:ns NR:ns ## COG: MT0351 COG0436 # Protein_GI_number: 15839723 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Mycobacterium tuberculosis CDC1551 # 7 409 26 429 429 536 63.0 1e-152 MPTPHPRQIRQSAKLLNVRYDVRGPILEEAQRMEAAGHRIMKLNIGNPAPFGFEAPDAVL AAMHQHLPHAQGYSDSKGIYSARTAVSQYYESRGIRDIGVDDVFIGNGVSEMITMVLQAL VDDGDEILVPSPDYPLWTGATTLAGGRAVHYRCVEEEGWEPDLEHIESLVTERTKGIVLI NPNNPTGAVYSRAVLQGIVDVARRHNLVLMADEIYEKITYDGARHINAAGLSDDVLTLTF SGLSKAYRVAGYRSGWVAVSGPKHRAADFLEGLTLLANMRMCANVPAQHAIQVALGGYQS IDDLVLPGGRLLEQRNLAQDRLNALPGVSVQPAHGALYLFPRLDPEVYAIDDDEAFVIEL LRAKKILVSHGGAFNYPHTDHFRLVTLPSVEDLSVALDRLEDFLEDWRERHG >gi|289556526|gb|ADCD01000094.1| GENE 5 4129 - 5049 771 306 aa, chain + ## HITS:1 COG:DR0132 KEGG:ns NR:ns ## COG: DR0132 COG2326 # Protein_GI_number: 15805171 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Deinococcus radiodurans # 45 295 18 259 266 209 45.0 4e-54 MGDTSDAEAGRPARATDGHSVFDAPARELFAARRGDEVRGPADVDAAATPGYGGDKAKGK KDLAARGGALADLQELLFAQSVRDAPVGEVPSLLVVLQGMDTAGKGGIMRHVIGAMDPQG VHLHAFKAPTPEERAHDFLWRIRPHLPRPGLVSVFDRSHYEDVLVHRVRGLSPLAEVEER YGAILEFEAAVRAAGTRIVKVMLRISPEEQAERLLARLDDPTKHWKFSEADLDDRAYWDQ YMDAYRIAIERTDTEDAPWFIVPADRKWFARLAVQQLIIETLQGMGLDWPEADFDVAAAR RRLLEG >gi|289556526|gb|ADCD01000094.1| GENE 6 5177 - 5761 525 194 aa, chain + ## HITS:1 COG:DR1199 KEGG:ns NR:ns ## COG: DR1199 COG0693 # Protein_GI_number: 15806218 # Func_class: R General function prediction only # Function: Putative intracellular protease/amidase # Organism: Deinococcus radiodurans # 11 192 7 188 190 189 50.0 2e-48 MTENANQNAPLTGKTVAFLATNGVEQVELTSPWEAVIAAGATPVLVSPESGTITAMQSDW DHGESFEVNTTVKDAKAEDFDGLVMPGGTLNADAMRVNKDAQAFVRAFFEQHKPVAAICH APWTLIEAGVVEGRRLTSYPSLQSDLKNAGAQWVDEEVVVDNGLTTSRSPEDLDAFNAKL VEELGEGKHEDQTA >gi|289556526|gb|ADCD01000094.1| GENE 7 5875 - 6162 302 95 aa, chain - ## HITS:1 COG:Cgl0995 KEGG:ns NR:ns ## COG: Cgl0995 COG1722 # Protein_GI_number: 19552245 # Func_class: L Replication, recombination and repair # Function: Exonuclease VII small subunit # Organism: Corynebacterium glutamicum # 29 90 19 80 81 60 58.0 1e-09 MSEQGMEHTQDAGRPSGVEGFTSADVSDVARMSYEQARTELMETVGRLEAGGAGLEESLA LWERGEALADRCQAWLDGARARLDQVRGEAAPDAD >gi|289556526|gb|ADCD01000094.1| GENE 8 6159 - 7472 963 437 aa, chain - ## HITS:1 COG:Cgl0996 KEGG:ns NR:ns ## COG: Cgl0996 COG1570 # Protein_GI_number: 19552246 # Func_class: L Replication, recombination and repair # Function: Exonuclease VII, large subunit # Organism: Corynebacterium glutamicum # 18 424 2 415 417 298 47.0 1e-80 MDQPVTEGAPAASDVPGSAPARAGETSAERPWPLRRLSENLKAHIERAPATWIEGQLIEF KNNRGNVYMTMRDLEEEVSLPLTAWRNVAMTLDGTVQQGSRVVARVKPNFWLKAGRLSMN VQEMRPVGLGDLLARVELLRRALAEEGLTSPAHKRPLPLLPHRIGLITGRDSDAKKDVLR NTLLRWPAAEFEIREVAVQGAEAPRQVAAALAELDADPAVDVIVIARGGGALEEVVLPFS DEALVRAVAAARTPVVSAIGHEADRPVLDDVADLRASTPTDAAKRIVPDAAQEAAGLADA RLRLAAAVERRVRAEAEGLAALRSRPVLARPHVMVDTRQEETDRWRERGRSALGHRLVRE EDAVTQLRARVRALSPQRTLDRGYAVVQHAGQVVRDADQVATDDRLDILVAAGRIAADVV ATHRTTPTPPHERTRQA >gi|289556526|gb|ADCD01000094.1| GENE 9 7664 - 8752 937 362 aa, chain + ## HITS:1 COG:no KEGG:Mlut_16310 NR:ns ## KEGG: Mlut_16310 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 362 1 362 362 429 96.0 1e-118 MRTTLSVLVAALAGLLAVLATAGALVDEATHRPELLRGVTEQVAVNPEVRAAVPGVIDDV VHDAIPEQVPGPLAQAAEDLLRPLAQRVADDPQVVQGWSDTADEARRAWLAQLEDPQGAD EPGSGADVTIPFGPVAQSGITAALGDIERDLREDRFDLPAQALLERIVGADVGDWAADTL LAPLYDRAAELRDSTALRMDARIDALAGTDRATVHRWVDASAHWRWAAAASVLALVGALL LAPRGRRGLAGAVAGAVALAGGLIGGARLGPDAVHLTAPEGASPGVAAFVQEMEEAARPA FAAAVAPYPQTLTTLGWIVLAAGLLLALAELWVARRGRVRAARADGPPAVGRSHTAADVT SR >gi|289556526|gb|ADCD01000094.1| GENE 10 8806 - 9912 393 368 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227371337|ref|ZP_03854821.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; SSU ribosomal protein S1P [Veillonella parvula DSM 2008] # 42 355 3 304 632 155 30 2e-37 MSAPSVSARPSAVGLGMPQVPRVRRSREEVEAAAPVSGEKRVLLAAPRGYCAGVDRAVVA VEKALEHHGAPVYVRKEIVHNRHVVDTLTERGVVFVDELDEVPEGALTVFSAHGVSPAVV EEAAQRNLRTIDATCPLVTKVHREAVRFAKQDKRILLIGHDGHEEVEGTFGEAPEHTTVI NDVAEARTVQVEDPDNLIWLSQTTLSVDETLEIVSVLRERFPNLQDPPSDDICYATSNRQ AAIKSISPECDLVIIVGSANSSNSVRLKEVAAEYGASRAERVDFANQVDESWFEGVATVG LSSGASVPEVLVQEVLALLAEYGYGQVDEVVTAEEDIIFSLPKELRAELKRVGDESRSLG GRRRDAEA >gi|289556526|gb|ADCD01000094.1| GENE 11 10071 - 11666 1496 531 aa, chain - ## HITS:1 COG:HP0214 KEGG:ns NR:ns ## COG: HP0214 COG0471 # Protein_GI_number: 15644842 # Func_class: P Inorganic ion transport and metabolism # Function: Di- and tricarboxylate transporters # Organism: Helicobacter pylori 26695 # 12 529 22 551 552 420 49.0 1e-117 MRDEPLTGGENVKRIIGLVAGPLLAVALFLLMPGDLGVWPRLVAATAVLMAVWWMTEALP IPATALLPLVIFPLGVPAEESDGGITFDAVGASYGNNVIFLFMGGFMLALAMQRWNLHRR IALGVLTFMGARTVNLVLGFMIATGFISMWVSNTATAVMMLPIGVSILVLVQRYGTDDAL TGDEAADQVDRPAAPASAAGEAPTQAEIRSLTKSNFGTALMLGIAYAASIGSLGTIIGTP PNTLLAGHMAAEHGVEIGFGQWMLVGVPIAVVLLFACWFLLTRVLFRPEIDEVPGGRDLI AAELARLGRMSAPEAKVLAVFVLAALAWITVPLISEYVLDLESPLLSDAAIAMVVGLILF LLPAGGGAGRGVRLLDWEAAKELPWGVLLLFGGGLALSGQFSKSGLSTWLGEQVKGFGDI PVWVLVVIAAVGILLLTEMTSNTATAATFLPVASGVALGTGVAPLMLAAPVALAATCAFM LPVATPPNAIAYGSGYVTIGQMVKGGVWLNIIAAVLISLASMTLLVWVFGL >gi|289556526|gb|ADCD01000094.1| GENE 12 11910 - 14285 1218 791 aa, chain - ## HITS:1 COG:CT825 KEGG:ns NR:ns ## COG: CT825 COG1322 # Protein_GI_number: 15605560 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Chlamydia trachomatis # 384 764 22 401 427 189 29.0 2e-47 MAVGAAQRRRSGEMLERRTERGLRRVAVRHEQHLVHGAAHLVRHRVAGLDGDPRRVLHGP AVDPRGDRRERDRAGAEPGRHLQGLAVARGEGVGLVDRLGPHRAHRVDDPARRQAPRRRR HGLPGGQPLRQVGLAQAAAFGQDLGAAAPVDGAVHASPAEQGGVGGVDDGVRVRGRDVPG GDGQLHGPTLGAGGRRRTGPVASAHEHPDAHRTDPHASRRRAAAADQPRGGARVRHARPA VRVRPDDPRHHRRRPARHVGAPGPRARAGGRHGRDDQPAPHAGGGRVRRRGRDGGRTPPG RRGGGLRRRRPGLDPHGLPVSARRGRGGHRRPRRRRPAGRGQRPQPALRLSRPPRRRRAA ASRVRVACEGGGMEILSLLLALILGLVLGALVGAWLMWRRAAGGGEEARRAQAELAALRT EHQGAREELAAARAEQRALTAARAEDAQRQRAESQVMSTLAPLGQRLAALQEQVSVLERD RASQFGRLGEQLRAAAATDRDLLNQTTSLMATLKSTSARGHWGEAQLRRVVEAAGMLHHV DFTEQATLSGRDGERLRPDLVVSLPGGKAMAVDAKAPIGDALAAEALADEPGEEAYERRQ ALAAQHAAAVRRHVDQLSAKSYWAGLEHSPELVLCFLPAESLLAAALDADPGLLDHAFSR NVALVAPVSLLTALKSVAYAWRQDTLAENAHTVVASAKDLYERLGTLGTHLDRMGGSLKT AVDRYNQLVGNVESRVLPAARRLRDADPGLAPTPDIRTLESAPRPLAAPELVAGVEEDEL RRRRAESAREA >gi|289556526|gb|ADCD01000094.1| GENE 13 14276 - 14950 406 224 aa, chain - ## HITS:1 COG:BH0581 KEGG:ns NR:ns ## COG: BH0581 COG2197 # Protein_GI_number: 15613144 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Bacillus halodurans # 25 224 2 201 201 168 42.0 9e-42 MREAADSTPSPATPPSAGRGPEAPLRLLLADDQALVRGALAALLETEPDLTVVAQAASGD EVADAVEAHDVDVALLDIEMPGVDGLEALRRIRDRGLDCAVLMVTTFGRPGYLERALAAG ARGFVVKDTPAEQLADAVRAVARGERVVDPSLAVDTLAAGPSPLTPREVDVLREALTGAS VRAIAGRLHLSAGTVRNHLSAAIGKTATSTRGEAATVARDRGWL >gi|289556526|gb|ADCD01000094.1| GENE 14 14947 - 16173 889 408 aa, chain - ## HITS:1 COG:BH0582 KEGG:ns NR:ns ## COG: BH0582 COG4585 # Protein_GI_number: 15613145 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Bacillus halodurans # 77 362 42 339 374 103 28.0 5e-22 MSPDGGSPAPARPAVGTAEHDPAVLPLHLWPSTLGFAGVWLISFGFVLVELLRRAFTPGD GRGEAILGVAAIAVFVLVYLAAFVVPRPVRAWPAWANTILTWLVLAACVAVLTRILGVHA LLYSPFLVAAWLFPHRLRVGLIGASVTVAAVLAAGLLFFPGDPALPVVLGNLAVVLVVLV GMRLAIGRDDRVMEMTHELDLAGQRERLGRDLHDILGHSLTTINVKTQLVHRLIDTDPAR AKQEAAEVIALSRTALAEARAAVAELAAPELGGQLSLSTGALRDAGMAVEAPPPGAVTEV PERHRALAAWIVREAVTNVLRHAGARRVRISLDAHHVAVLDDGAGLPASVAAGAGPRTLA ERAAAEGARLEVGSGLDGEGTGVAVHWGGTTPEAAHGVLPAAEGRMDA >gi|289556526|gb|ADCD01000094.1| GENE 15 16170 - 16964 638 264 aa, chain - ## HITS:1 COG:no KEGG:Mlut_16230 NR:ns ## KEGG: Mlut_16230 # Name: not_defined # Def: ABC-2 type transporter # Organism: M.luteus # Pathway: ABC transporters [PATH:mlu02010] # 1 264 1 264 264 386 96.0 1e-106 MSTTTTAPGRLVGYARREFVRNVRMIESSFFIVVLPVALYLMFGALSDWGDLPVGHGNVS AYTMTGMAVYGAVMATTSIAGSAAVERQSGWGRQLSLTALTPGAYLAGKCLVALATAALP VLAVLAAGALTGAELDGPLRWLTTGALALVSSLPFALFGLAAALLFRSEAAVSAASGILV VFGFLGNLFVPLSGIMLDIGRFTPVYGAGALARWPQMEGERAPMGTERAAAADPLWLPLV NLLAWTAVFAVVCLLASRSRTARA >gi|289556526|gb|ADCD01000094.1| GENE 16 16961 - 17932 825 323 aa, chain - ## HITS:1 COG:BS_yvfR KEGG:ns NR:ns ## COG: BS_yvfR COG1131 # Protein_GI_number: 16080462 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Bacillus subtilis # 6 217 5 217 301 169 40.0 8e-42 MSNAPALATRGLTRRFGPVRAVDGVDLTVPAGEVLALLGPNGAGKTTLLDMALGFSPPSD GTVRVLGSEPVAAVRQGRVGAVLQTGGLLEDLSVRETVAMVAGCHRRHIGVPAALERAGL TGLAGRRVKKCSGGERQRLRFALALLTDPELLILDEPTAGMDVRARHDFWDTMHAEADRG RTIVFATHFLPEAEDFADRIVLMREGRIHADGTPAELATGGSVTLTGRWAGGGDDPDVSA RLAAALGLPQDAVQLEPQHPSPGRLRVRVPAGGSVTGDDVARHLLNERLVEDLAITHASL DDVFLSLTDAGQPAPSEPQESLT >gi|289556526|gb|ADCD01000094.1| GENE 17 17978 - 18340 127 120 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MEAGSNAGQLDLGDEGVALAVQVHGHGRGAGRAGRQTVHQALHLAEGTLHLTERIDGTGH VGSLSSGVGWAPADTAASDHHNSTPGEPIPEICVKSAQLSGGRPARLGAAPPMTSVMAHS >gi|289556526|gb|ADCD01000094.1| GENE 18 18161 - 18430 129 89 aa, chain + ## HITS:1 COG:no KEGG:Mlut_16210 NR:ns ## KEGG: Mlut_16210 # Name: not_defined # Def: heat shock protein HSP20 # Organism: M.luteus # Pathway: not_defined # 1 58 1 58 163 101 94.0 1e-20 MARPIDPFREMERPFREMERLVNGLTTRATGTASMPMNLYREGDAFVAEVELPGVRPGLH RRGRGGAHPHRPRRAQGGPGPRGPPLAHP >gi|289556526|gb|ADCD01000094.1| GENE 19 18351 - 18611 136 86 aa, chain + ## HITS:1 COG:ML1795 KEGG:ns NR:ns ## COG: ML1795 COG0071 # Protein_GI_number: 15827955 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone (small heat shock protein) # Organism: Mycobacterium leprae # 1 77 57 131 148 68 57.0 3e-12 MEERTLTVRAERKEDPAREDRRWLTRERSAGTFARQLTLGEGLALDRIQADYSDGVLTLT IPVAEQAKPRKISVTHGGAAPVARRP >gi|289556526|gb|ADCD01000094.1| GENE 20 19228 - 19851 101 207 aa, chain - ## HITS:1 COG:no KEGG:RMDY18_05730 NR:ns ## KEGG: RMDY18_05730 # Name: not_defined # Def: UDP-N-acetylglucosamine enolpyruvyl transferase # Organism: R.mucilaginosa # Pathway: not_defined # 1 111 268 378 378 99 53.0 6e-20 MDDVAVVERAHHLGDRVGLADVRQELVAQALPLGGALHDAGDVHEGYRGRQNALGAEDLG QLRQALIRQVHHAHVRLDRRERVVRREHGLARLRVEQGRLAHVGQSHESDSQSHSPAVYR RARRGGGVPHRPRSVGRTSIPARCVGRKRALPCSGGRTGRVFASGGRNLRSPAHGTQRPS GHGARQPQPPPPRNPETRTTQHASPPR >gi|289556526|gb|ADCD01000094.1| GENE 21 19510 - 20595 940 361 aa, chain + ## HITS:1 COG:Cgl1003 KEGG:ns NR:ns ## COG: Cgl1003 COG0012 # Protein_GI_number: 19552253 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted GTPase, probable translation factor # Organism: Corynebacterium glutamicum # 1 361 1 361 361 455 71.0 1e-128 MALTIGFVGLPNVGKSTLFNAQTRQTVLAANYPFATIEPNVGVVNLPDERLPQLAEIFGS ERILPATVSFVDIAGIVKGASEGEGLGNQFLANIREAHAIAQVVRAFDDGDVVHVDGKVD PASDMETINTELIIADMQTVEKAIPRVEKEINGKKKEPADLEALQAALAVLERGETIFAA RDKDKLDMDRLRELSLLTAKPFIYVFNSDEGVLGDEAKQQELRDLVAPADAVFLDAKLES DLVELSKEEAAEMLEMAGQDESGLDQLARVGFSTLGLQTYLTAGPKETRAWTIPVGATAP EAAGVIHTDFQRGFIKAEIVSFDDLIAAGSMADAKAAGKVRMEGKDYVMKDGDVVEFRFN V >gi|289556526|gb|ADCD01000094.1| GENE 22 20641 - 22359 2091 572 aa, chain + ## HITS:1 COG:no KEGG:Namu_2679 NR:ns ## KEGG: Namu_2679 # Name: not_defined # Def: hypothetical protein # Organism: N.multipartita # Pathway: not_defined # 3 555 4 553 554 275 32.0 2e-72 MELQERQIRKRLRDDFEPHIDLSDVEQHHGEEQLAKFRTTRALAALTLCAHANLDVVAAC GAVVDESGDEGLDAIGYSPSRQELYLIQAKTSSGSPSPSEVSAFCDGIQHVLNWEWSMLG PKVRARRQEIEAALEDSNCRVIAVFSHLGKGDPNKQAVAHSDRLLKTINSSGEILDIRYE DLKDNYNRRHVSNGFGAIDHELQLERWTTLGDYRSEIIGVISGDQLARLVVDYGDAIFDR NIRTVLSSTPTNETIDKTIESDPSHFWYFNNGITVVADSIKCPHRTAPRPNDESFLLKSL NVVNGAQTCGALARALKAGVNLEEVRVTIRIISTQGQSNDFEQLVTRYTNTQNQITNKEF VSLDNVQQELSDLLRGEDILYAYKTGQVDGASYKFSFDLEDATRAMACLTGPRNATRAKR EIGRMWADLSAAPYTDLFNSRLKAERLYNAVHFWRQVNGLIDGIEVEYEAREGRIVSNSR YIACSVLMKQYQALGNHFDEINSAVDNWVSHNSTAISDLMKLIIRIHEEVNPQGYPMSFF KNVEKSADFYYKVTERIRGEISFSNAPCKLNE >gi|289556526|gb|ADCD01000094.1| GENE 23 22514 - 23263 356 249 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MMTPLNARAAQRAIPCRVACPQDSGAWTGRCRPSEPTMPVLAAVKASHDVDRFTVEMLSM ASKLAIFPLSLLAYWLIDARACSSSAVRRRAYGLGAAVRAFDAPDTAPGSVMAVAVVAAR PPRLDTWNALSARLPVERERISAISLIILPKLVGTAAGGIFAQCGWMPSARALRTAARAR PASGRSGRRESSVLEQCRATVGGGVDLLGTQQLRQLAPQLTVEALEKPGDAVALRLAQSL AELTPQHCP Prediction of potential genes in microbial genomes Time: Thu May 26 08:17:33 2011 Seq name: gi|289556436|gb|ADCD01000095.1| Micrococcus luteus SK58 ctg1119142780338, whole genome shotgun sequence Length of sequence - 100919 bp Number of predicted genes - 86, with homology - 82 Number of transcription units - 46, operones - 20 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 60 - 1418 1303 ## COG0477 Permeases of the major facilitator superfamily 2 2 Op 1 1/0.222 - CDS 1650 - 2435 727 ## COG1024 Enoyl-CoA hydratase/carnithine racemase 3 2 Op 2 2/0.222 - CDS 2467 - 3636 1094 ## COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 4 2 Op 3 4/0.000 - CDS 3636 - 3956 285 ## COG2151 Predicted metal-sulfur cluster biosynthetic enzyme 5 2 Op 4 5/0.000 - CDS 4142 - 4837 696 ## COG3396 Uncharacterized conserved protein 6 2 Op 5 5/0.000 - CDS 4972 - 5274 329 ## COG3460 Uncharacterized enzyme of phenylacetate metabolism 7 2 Op 6 . - CDS 5278 - 6285 1052 ## COG3396 Uncharacterized conserved protein - Prom 6359 - 6418 2.1 8 3 Op 1 . + CDS 6545 - 6982 293 ## Mlut_20140 hypothetical protein 9 3 Op 2 . + CDS 6979 - 8511 1003 ## Mlut_20130 hypothetical protein + Term 8691 - 8732 3.0 10 4 Tu 1 . - CDS 8546 - 10459 1789 ## COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases 11 5 Op 1 . + CDS 10658 - 11386 563 ## COG1414 Transcriptional regulator 12 5 Op 2 . + CDS 11458 - 12588 1122 ## COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase 13 6 Tu 1 . - CDS 12605 - 13126 349 ## COG3448 CBS-domain-containing membrane protein 14 7 Tu 1 . - CDS 13517 - 13771 59 ## 15 8 Op 1 . + CDS 13850 - 14623 308 ## gi|289706768|ref|ZP_06503111.1| hypothetical protein HMPREF0569_1943 16 8 Op 2 . + CDS 14686 - 15909 597 ## gi|289706769|ref|ZP_06503112.1| hypothetical protein HMPREF0569_1944 17 8 Op 3 . + CDS 15906 - 16586 254 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 18 9 Tu 1 . - CDS 16738 - 18942 1327 ## COG5479 Uncharacterized protein potentially involved in peptidoglycan biosynthesis 19 10 Op 1 2/0.222 + CDS 19134 - 19463 292 ## COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases 20 10 Op 2 . + CDS 19460 - 20749 853 ## COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases 21 11 Tu 1 . - CDS 20810 - 22306 1102 ## COG0397 Uncharacterized conserved protein 22 12 Tu 1 . - CDS 22460 - 23410 515 ## Mlut_20040 hypothetical protein 23 13 Op 1 5/0.000 - CDS 23620 - 24480 695 ## COG3836 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase 24 13 Op 2 . - CDS 24625 - 25410 725 ## COG3971 2-keto-4-pentenoate hydratase 25 14 Tu 1 . - CDS 25711 - 26877 1122 ## COG0346 Lactoylglutathione lyase and related lyases 26 15 Op 1 2/0.222 - CDS 27139 - 28683 1609 ## COG1012 NAD-dependent aldehyde dehydrogenases 27 15 Op 2 . - CDS 28764 - 29465 605 ## COG1802 Transcriptional regulators 28 15 Op 3 . - CDS 29468 - 31066 1407 ## COG0684 Demethylmenaquinone methyltransferase 29 15 Op 4 . - CDS 31161 - 32375 1034 ## COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs 30 16 Op 1 . + CDS 31266 - 33365 654 ## 31 16 Op 2 . + CDS 33428 - 34273 800 ## COG2301 Citrate lyase beta subunit 32 16 Op 3 . + CDS 34325 - 34810 466 ## COG0586 Uncharacterized membrane-associated protein 33 17 Op 1 16/0.000 + CDS 34918 - 35862 955 ## COG0214 Pyridoxine biosynthesis enzyme 34 17 Op 2 . + CDS 36021 - 36491 391 ## COG0311 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis + Term 36681 - 36720 2.4 35 18 Tu 1 . - CDS 36528 - 37670 1019 ## COG0686 Alanine dehydrogenase 36 19 Tu 1 . + CDS 37715 - 38212 279 ## Mlut_19890 hypothetical protein 37 20 Op 1 4/0.000 - CDS 38268 - 39056 642 ## COG2186 Transcriptional regulators 38 20 Op 2 . - CDS 39097 - 40758 1493 ## COG1620 L-lactate permease 39 21 Op 1 17/0.000 + CDS 40960 - 41823 743 ## COG0247 Fe-S oxidoreductase 40 21 Op 2 13/0.000 + CDS 41820 - 43460 1346 ## COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain 41 21 Op 3 . + CDS 43457 - 44152 497 ## COG1556 Uncharacterized conserved protein 42 22 Tu 1 . - CDS 44579 - 46276 1609 ## COG0591 Na+/proline symporter - Prom 46524 - 46583 1.5 43 23 Tu 1 . + CDS 46630 - 47040 203 ## Mlut_19790 hypothetical protein + Term 47154 - 47202 17.6 + TRNA 47075 - 47147 81.2 # Ala CGC 0 0 44 24 Op 1 . + CDS 47393 - 48520 934 ## COG0438 Glycosyltransferase 45 24 Op 2 . + CDS 48520 - 49611 659 ## Mlut_19760 predicted glycosyl transferase 46 24 Op 3 . + CDS 49698 - 52925 1803 ## Namu_3370 hypothetical protein 47 24 Op 4 . + CDS 52946 - 54301 844 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 48 24 Op 5 . + CDS 54361 - 55287 502 ## Mlut_19710 hypothetical protein 49 24 Op 6 . + CDS 55011 - 56258 674 ## Mlut_19700 hypothetical protein 50 25 Tu 1 . + CDS 56503 - 57552 784 ## COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases + Term 57631 - 57663 3.3 51 26 Op 1 . - CDS 57723 - 58484 665 ## Slin_5113 protein of unknown function DUF1264 52 26 Op 2 . - CDS 58573 - 60258 1268 ## COG3540 Phosphodiesterase/alkaline phosphatase D 53 27 Tu 1 . + CDS 60393 - 60668 186 ## Mlut_19670 hypothetical protein + Term 60779 - 60835 1.2 54 28 Tu 1 . - CDS 60678 - 61505 676 ## Mlut_19660 hypothetical protein - Term 61672 - 61697 -0.8 55 29 Tu 1 . - CDS 61702 - 63327 740 ## cauri_0636 Nif-specific regulatory protein 56 30 Op 1 . + CDS 63585 - 64688 614 ## COG1062 Zn-dependent alcohol dehydrogenases, class III 57 30 Op 2 . + CDS 64700 - 66112 1043 ## Oant_2946 hypothetical protein 58 31 Tu 1 . - CDS 66025 - 66510 120 ## 59 32 Tu 1 . + CDS 66334 - 68295 1774 ## COG0286 Type I restriction-modification system methyltransferase subunit + Term 68492 - 68526 -0.6 60 33 Op 1 11/0.000 + CDS 68655 - 69524 406 ## COG0732 Restriction endonuclease S subunits 61 33 Op 2 . + CDS 69530 - 72796 2796 ## COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases 62 33 Op 3 . + CDS 72798 - 73724 548 ## Bsel_0763 methionine sulfoxide reductase A 63 34 Op 1 6/0.000 + CDS 73835 - 75265 897 ## COG1479 Uncharacterized conserved protein 64 34 Op 2 . + CDS 75255 - 77312 1088 ## COG1479 Uncharacterized conserved protein 65 34 Op 3 . + CDS 77358 - 77567 287 ## Mlut_19580 hypothetical protein - Term 77382 - 77425 -0.9 66 35 Tu 1 . - CDS 77658 - 78458 533 ## COG1024 Enoyl-CoA hydratase/carnithine racemase 67 36 Tu 1 . + CDS 78279 - 78608 59 ## 68 37 Tu 1 . - CDS 78618 - 79160 394 ## KRH_01240 MarR family transcriptional regulator + Prom 79177 - 79236 2.2 69 38 Tu 1 . + CDS 79293 - 79679 270 ## gi|289706823|ref|ZP_06503166.1| hypothetical protein HMPREF0569_1999 70 39 Op 1 11/0.000 - CDS 79689 - 80882 978 ## COG1960 Acyl-CoA dehydrogenases 71 39 Op 2 8/0.000 - CDS 80888 - 82489 1423 ## COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 72 39 Op 3 . - CDS 82510 - 83658 986 ## COG0183 Acetyl-CoA acetyltransferase 73 40 Tu 1 . + CDS 83584 - 84171 341 ## Mlut_19530 hypothetical protein 74 41 Tu 1 . - CDS 84309 - 84701 239 ## Mlut_19520 hypothetical protein 75 42 Op 1 . - CDS 84891 - 86345 754 ## PROTEIN SUPPORTED gi|145629959|ref|ZP_01785741.1| 50S ribosomal protein L21 76 42 Op 2 . - CDS 86394 - 87749 1070 ## Mlut_19500 ribonuclease HI 77 43 Op 1 . - CDS 87962 - 88468 515 ## COG1309 Transcriptional regulator 78 43 Op 2 17/0.000 - CDS 88465 - 89166 252 ## PROTEIN SUPPORTED gi|225088774|ref|YP_002660041.1| ribosomal protein S16 79 43 Op 3 14/0.000 - CDS 89166 - 90896 1351 ## COG1178 ABC-type Fe3+ transport system, permease component 80 43 Op 4 . - CDS 90896 - 91963 918 ## COG4143 ABC-type thiamine transport system, periplasmic component 81 44 Tu 1 . + CDS 92280 - 93467 1038 ## COG0628 Predicted permease 82 45 Tu 1 . - CDS 93433 - 94482 762 ## Mlut_19440 peptidylarginine deiminase-like enzyme 83 46 Op 1 4/0.000 + CDS 94623 - 96500 460 ## COG0506 Proline dehydrogenase 84 46 Op 2 . + CDS 96086 - 98257 1554 ## COG1012 NAD-dependent aldehyde dehydrogenases 85 46 Op 3 . + CDS 98277 - 98858 478 ## Mlut_19420 predicted thioesterase 86 46 Op 4 . + CDS 98890 - 100884 1645 ## COG0069 Glutamate synthase domain 2 Predicted protein(s) >gi|289556436|gb|ADCD01000095.1| GENE 1 60 - 1418 1303 452 aa, chain - ## HITS:1 COG:ECs2778 KEGG:ns NR:ns ## COG: ECs2778 COG0477 # Protein_GI_number: 15832032 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli O157:H7 # 21 427 21 432 438 248 36.0 1e-65 MSHTVASPAAPVPARDRREERKVIAGTVVGTTIEWYDFFIFAQATALVFAALFFQPMGEN GSQIAAWVTLGISFLVRPLGAIIAGHLGDRFGRKLVLSLTLIGMGLATTLIGLLPTYAQI GVWAPILLVALRLLQGLSAGGEWGGAALLSVEHAPHGKRGLFGSAPQIGVPLGMILATGV LFIVRSTMSEEQFLTWGWRIPFLISVVLIVVGYLIRKAVEESPVFKEMQQLKVDESAPLG ELFRHHTKEVILAAVIFAANNGVGYLLIAWFSKYGGPKGLGMTSSEVLIASLVGGVGWFI FTLLGGWVSDKIGRKLTFVFGYGFLIVWAFPLFGLLNTASLPLFSLGLFILTLGLGPSYG PQSAMYAEMFPARVRFSGVSIGYALGTIIGGAFAPLLADQLVKTGWENVAWYIIVISAIS LIAVLFVPKGIQDRELHDEQVVATRSNPAVPA >gi|289556436|gb|ADCD01000095.1| GENE 2 1650 - 2435 727 261 aa, chain - ## HITS:1 COG:SMb21633 KEGG:ns NR:ns ## COG: SMb21633 COG1024 # Protein_GI_number: 16265300 # Func_class: I Lipid transport and metabolism # Function: Enoyl-CoA hydratase/carnithine racemase # Organism: Sinorhizobium meliloti # 5 260 10 263 263 120 35.0 2e-27 MIEIAVEHGVAEIVLDAPQRMNALDEAALAELQAAYERAAAGVESGEVRAVLLRGEGRGF CAGRDISAVVPAEDDATAYLRDRVTPVLRAMSAIPVPTFAAVQGACLGVGLGLAIATDVV YVAEDAKIGSPFANLGATLDSGGHWLFTERLGAHRTLDLIYTAELLSGAEAVQAGLFSRA LPADELLEFTRAKVAQVASGATLAFRASKELVAQVRDRRVGLWESLDAENIAQGELCGTA DYAEGFQAFQEKRKPEFTGRG >gi|289556436|gb|ADCD01000095.1| GENE 3 2467 - 3636 1094 389 aa, chain - ## HITS:1 COG:SMb21636 KEGG:ns NR:ns ## COG: SMb21636 COG1018 # Protein_GI_number: 16265303 # Func_class: C Energy production and conversion # Function: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 # Organism: Sinorhizobium meliloti # 15 388 2 357 358 270 41.0 3e-72 MTETTDAPTTGKRRATFNTLEVSELRRLTEDSVEVTFAVPEELADDYDYVPGQYVALRKE LDGAEVRRSYSICAVPKRGEIRVAVKKDIGGTFSTWANESLEVGEKIDVMNPQGAFTSRT HVTSLNDAQKVAAEKVAEKKDTHLVAFAAGSGITPIMAIAKAVLAASETSRFDLVYANRS AMDVMFAEEIGDLKDKYPARFTVHHVLSREQRVSPLLSGRIDEDKLTTLLDRVIDVEGTD EWFLCGPFELVQLTRETLAARGVSEDAVRFELFTTGRPENPQGHSGRVVEVDPKGDNVTI EFNLDGLTAKVESPKSAHETVLNAALRVRSDVPFACAGGVCGTCRAKVVDGAYEMDENYA LEKDEVEKGYVLTCQTRPTSDSITLDFDA >gi|289556436|gb|ADCD01000095.1| GENE 4 3636 - 3956 285 106 aa, chain - ## HITS:1 COG:RSp0607 KEGG:ns NR:ns ## COG: RSp0607 COG2151 # Protein_GI_number: 17548828 # Func_class: R General function prediction only # Function: Predicted metal-sulfur cluster biosynthetic enzyme # Organism: Ralstonia solanacearum # 1 104 69 180 182 106 51.0 9e-24 MDTITTDVARALGRAGFPDAEVRLVLQPAWTTDWMTDEGKAKLNEYGIAPPVARTTDGPI RIGMAVKCPRCHSLNTREITRFGSTSCKALYTCRECLEPFDYFKVH >gi|289556436|gb|ADCD01000095.1| GENE 5 4142 - 4837 696 231 aa, chain - ## HITS:1 COG:ydbP KEGG:ns NR:ns ## COG: ydbP COG3396 # Protein_GI_number: 16129351 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1 231 17 248 248 194 47.0 2e-49 MLGQRLSWWISRAPEIEEDIALGNIALDLVGHARFLLSYAGTAWGKTEDELAYFRDEEEF RSVRLVEAENGDFAKTIARQLYYSFYSYELYTRLRESTDPTLAAIADKALKEVLYHQDHA ALWLQRLGLGTEESKRRMQRGLDELWPYVAELFHDDDVVRALAEQGVAVLPSSLEEPTMT RIRAAIEEAGLTVPTTGTARGGDRSGAMSEYRGYILAEMQSLARRHPGATW >gi|289556436|gb|ADCD01000095.1| GENE 6 4972 - 5274 329 100 aa, chain - ## HITS:1 COG:RSp0605 KEGG:ns NR:ns ## COG: RSp0605 COG3460 # Protein_GI_number: 17548826 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Uncharacterized enzyme of phenylacetate metabolism # Organism: Ralstonia solanacearum # 9 100 4 95 95 108 55.0 2e-24 MSETTAASHAWPLWEVFVRANRGLSHVHAGSLHAPDATLALRNARDLYTRRNEGTSVWVV PAEAIAASDPDSKGGFFESPQGKSYRHATYYQQSEGVPHL >gi|289556436|gb|ADCD01000095.1| GENE 7 5278 - 6285 1052 335 aa, chain - ## HITS:1 COG:RSp0604 KEGG:ns NR:ns ## COG: RSp0604 COG3396 # Protein_GI_number: 17548825 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Ralstonia solanacearum # 7 326 13 332 342 427 65.0 1e-119 MTQTSSPQHLASVPSPEDAAGQENFDRLIAEDSRIEPRDWMPEAYRKSLTRQVSQHAHSE IIGMQPEANWITRAPSLKRKAILMAKVQDEAGHGLYLYSAAETLGTPRDELNEQLLSGRA KYSSIFNYPARTWADMGAIGWLVDGAAICNQVPLCRASYGPYGRAMVRICKEESFHQRQG WEILYELSHGTPEQKQMAQDAVDRFYGPALQMFGPPDEDSPNSRQSMAWKVKRFSNDDLR QRFVDMIVPQAEALGLTLPDPDLKWNEERGHYDFGELDWDEFMSVIKGNGPMNTQRMARR IQAHEEGAWVREAAAAYARRQAEQNAPAETHLIGA >gi|289556436|gb|ADCD01000095.1| GENE 8 6545 - 6982 293 145 aa, chain + ## HITS:1 COG:no KEGG:Mlut_20140 NR:ns ## KEGG: Mlut_20140 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 145 1 145 145 131 93.0 8e-30 MPPLIGPQQIATALRAVGLDDDAARLVAWADPARREREAAEQALADLAVAQTQLRTALGG LVSAATDVRSAIQTGWRGEAAGAYGEAVRRAAALAAELEREAGEWLALRATAERDAEDAR RNAEARQRAAEETALAVLRSLAVAA >gi|289556436|gb|ADCD01000095.1| GENE 9 6979 - 8511 1003 510 aa, chain + ## HITS:1 COG:no KEGG:Mlut_20130 NR:ns ## KEGG: Mlut_20130 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 510 1 510 510 723 96.0 0 MTGGRGAGPGAVAFSTHGGPGSIYAEAEEMRVVAGRHEHAAEEAAGASWQVDAAAFGLGR SATWLASAALLQDRLAEAVGRVRSLSEQCAELHRDLLSAAARYEEAERAAAGIMAAEDAS LEELPGLLWRDGHDGLTTREAERLVQDLVQAVPEAIVSAALAATGFPLLAALARIDVKML TRAQKAVLKRPVSTAAKKGTDAASDLTEALRVSPDEAWTVAADALALAGAAPRGAVTPHG APQDRPAAPARLDGSAAGLASLIPRGEGDGDLTVTEVVQENGSHAWVVGLPGTRGGLIPD PESTDPWDAGGLLDALGSESEVTAPAVRAALEAAGVPHGAPLVLAGYSQGGVHAVNLAGR EDFTSVYPVAGVMTIAAPSGNAVETGRTAVLEFSADGDLAVAADGAPTPVSARRAEVVFH PAGHGWDAPGGGFRTGSPLAVKADLDAAHDFEGQVDLIRQFEAAEPAARAEVAGLSAALA GLTAGTVASSRAVRLRRTPPEGGHRPPGSR >gi|289556436|gb|ADCD01000095.1| GENE 10 8546 - 10459 1789 637 aa, chain - ## HITS:1 COG:Cgl2625_1 KEGG:ns NR:ns ## COG: Cgl2625_1 COG0654 # Protein_GI_number: 19553875 # Func_class: H Coenzyme transport and metabolism; C Energy production and conversion # Function: 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases # Organism: Corynebacterium glutamicum # 1 406 1 403 403 470 56.0 1e-132 MLFHHHGYVSTNPRVQVAAGIGLDRPAELPDEMDVLIVGSGPAGMIAAAQLAMFPDVHTR IIERRPHRLEIGQADGIQARSVETFQAFGFASEIIDEAFDLTSMAFWNPAEDDADTIVRT SLAEDDPEGVSEFPHLIVNQARILDWFAEYMKNSPTRARPDYGWAFETLEDTNDGEHPVL VTLRRTVDAEGNALEDPASGPTRQVRAKYVVGADGAGSRVRKAIGHTLTGDAANHAWGVM DALADTDFPDIRTKCAIHSSSGSILLIPREGGHLFRMYVDLGEVPADDDHRVRQTPLEEI IRRAQQILRPYTLDVKEVAWHSVYEVGHRLTSGFDNRERVAHPNVFLLGDACHTHSAKAG QGMNVSMQDGWNLGWKLGQVLSGLAPVELVPTYAEERKEIAKNLIDFDKEWSTLMATPTS ELGDPNEVAEFYTKTAEFPAGFMTEYQPSLLTTDATGQALAQGYPIGKRFKSALVERSCD TNVKHLGHLHRADGRWRVYVFADAASPRAEDSKVAAWAKAIEEDPQSFRNRHTPSDGPED ARFDIKVVYQQKQTEFAHPDVPSIFRPTTGSLGLHDLNNIFATCRPQHGEDIFEARGISR DGAVVVVRPDQYVSGVFGLDEVDRLNAFFAGVLLDAN >gi|289556436|gb|ADCD01000095.1| GENE 11 10658 - 11386 563 242 aa, chain + ## HITS:1 COG:AGpA685_1 KEGG:ns NR:ns ## COG: AGpA685_1 COG1414 # Protein_GI_number: 16119692 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 15 241 33 278 305 63 31.0 3e-10 MAEHDGGPVREGAPSQTLSRALTLLETVVEAAEPPTIADLADGLGVHRSVAYRMLRTFEA HGLLRRDGLGRVHAAPGLAVLARRVEQDLRAAAMPHLTAVSTDLGMTAFLVVWDGAHCLT LATAEPPSGNLVTQRPGTRHPLGVGAPGMAIAVALTGQEWARLPGEAPPERPELDDVRER GWAVSSDEVITGVSSVAVPLRVPGQLPAALAVVYATRPEDPVRLGDRLGEAARAVAVAFG AD >gi|289556436|gb|ADCD01000095.1| GENE 12 11458 - 12588 1122 376 aa, chain + ## HITS:1 COG:MT3881 KEGG:ns NR:ns ## COG: MT3881 COG0079 # Protein_GI_number: 15843395 # Func_class: E Amino acid transport and metabolism # Function: Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase # Organism: Mycobacterium tuberculosis CDC1551 # 21 372 12 347 353 276 49.0 5e-74 MTDDAQQTPAVVAPHKKVGMLPPYAAGKPPVAVPGLHPYKLSSNENPYAPVPGVIDRVRQ VVTGPEGAPSTLCRYPDTLSTGLRQALAAHLDVPADDVVTGAGSLGALAQVVTAFAGHGE AGEGDEVIFAWRSFEAYPIVVRTAGAVDVQVPLTADHRHDLPAMLEAITERTRVILLCTP NNPTGPVLTTAEVEDFLARVPAHILVVIDEAYVEFVRDEDAVKGLEMYRKHANVVVLRTF SKAHGLANLRVGYSVSQPEITKALRTVATPFAVSTVAEEAAIASLEHLDEVLERVQIVVD ERERVAAALAEAGWDLPSSQANFVWLPLGERTQAFAEAAQARALSVRAFAGEGVRVSIGE KEANDRFLEVARDFLA >gi|289556436|gb|ADCD01000095.1| GENE 13 12605 - 13126 349 173 aa, chain - ## HITS:1 COG:slr0789 KEGG:ns NR:ns ## COG: slr0789 COG3448 # Protein_GI_number: 16331896 # Func_class: T Signal transduction mechanisms # Function: CBS-domain-containing membrane protein # Organism: Synechocystis # 30 164 48 174 185 82 34.0 3e-16 MTRLPGLRRPRFLDPWRRPLAPRLPWHVVLAASIAGALTIATLSLGEDLASAPLLVGAFG SSCVLVFLVPHGPHSHPANVLVGHVVSAACGIAVVSVLPLAWYSLAAGMGLAMAVMAGLR VIHAPAGATALTVMLSNADWHYLVTPVLAGALVLTACALLYRRLMWRVIGPPA >gi|289556436|gb|ADCD01000095.1| GENE 14 13517 - 13771 59 84 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVDGQGAHEAQRQPAQCHEQHGTGDEQPERPQPPARHGQFPLVGSDRAPYCTRATAPTAA APHAAVFLSRAMMASLLCGTQRIP >gi|289556436|gb|ADCD01000095.1| GENE 15 13850 - 14623 308 257 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289706768|ref|ZP_06503111.1| ## NR: gi|289706768|ref|ZP_06503111.1| hypothetical protein HMPREF0569_1943 [Micrococcus luteus SK58] # 89 257 1 169 169 252 99.0 1e-65 MAEAATTGWNLTLMASGADPGVRHLAGPAAPCLAGVDVPTLESLRAARGFLLREGSILAD RAARSGELAGRPVALASAADWRGLPADGVIQPTPAFDNSASYVGFLVGDPADLDGFLQNL RASGLGAEATPAPSALNAAITSPVLGVTATLTGLTLISVTAFWVLTLRSTERAALRVLRL LGVSPLRAAVSRARVSLVPFLGAAGISAALWQGMVLTGAVTEPSPLVASGVILVVLLGDA VLVAATHVVSLWMRAPR >gi|289556436|gb|ADCD01000095.1| GENE 16 14686 - 15909 597 407 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289706769|ref|ZP_06503112.1| ## NR: gi|289706769|ref|ZP_06503112.1| hypothetical protein HMPREF0569_1944 [Micrococcus luteus SK58] # 2 407 1 406 406 627 99.0 1e-178 MVLVAFVHAVASCSLLGLSFQQASEAQEIDRHLQRWEQLGAASLRGFYLAGPGDLEGGGA APGDSQQEPPEPDLSADSTADSTDGGRRTAALFALLADPHRTAYTMDPYGDRFGDDLPGA LLVTEDFFAGSGLDETMSPTGQSPHREADGTAAPYAVLGSDSSAKDPYALTVGGVLPPPT RVQFQDAMIPVTGRLAPGATALDPMMGSVPLDEAALVVVPTSMLASLYPPDALEGLLLRT IVLGQDAVPALDAAGRALETDALVVTAEPLTPQSSALLQSLSASSRTLLVLFGAAVLGAV VSLFGVLGVLARALAPTWRIAAMVGAARWQAAVRITVPVLFAWVLPAAVGLTAGASALPG PPSTGPMSAALIAVMAIGAGATLSSWRALAATFGRRPRRHRPTTETT >gi|289556436|gb|ADCD01000095.1| GENE 17 15906 - 16586 254 226 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 4 226 5 217 311 102 31 7e-21 MTLLEVHDVDKTFVSGGAAVPVLREASLLVPAGQMHAVTGPSGSGKSTLLRILACLDSPD SGRVLLGGEPLPKPWSRGGDRYRNQRCGIVLQDFALMEHATALENVMLPLRYGPDRVPRR EQRRRAGEALERVGLGTRAGHRARTLSGGEKQRVAVARALINEPPLVLADEPTGALDQDR TRDVVDLLRGAVGPERAVVVVTHDPRVAAACDRRWHLVDGELAPQD >gi|289556436|gb|ADCD01000095.1| GENE 18 16738 - 18942 1327 734 aa, chain - ## HITS:1 COG:Cgl2827 KEGG:ns NR:ns ## COG: Cgl2827 COG5479 # Protein_GI_number: 19554077 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Uncharacterized protein potentially involved in peptidoglycan biosynthesis # Organism: Corynebacterium glutamicum # 280 516 242 482 692 153 39.0 1e-36 MVDHATITTALRPSSHRTTPPTRGGDTACACRSSGTPPSEGIRMKILPPRSAASPRPLAP AVAVAALSVLVGGLLPQSPSATTEGAPDARPRDDAARATTAGTAATPASAAPVEGAGVAI VPQEGENLVPAEEAPAGVVLGEPVVDRPFTVAAAVWDAAADDAVKRVEIRVRQDGAWGPW QVLDRPVLPEDAAPARTGTDPFVAFGADGAQLRVTTVDGAAPAGLELSLIDPGTAATDET VASAHPAVAAEQAAETAGLPRGVKSSAVVGGEEPAEARTVATVSDARAKILPDVITRAQW GADESWAEDSPQFGQVRALTIHHTAGTNDYTRAQAVEQMRGIYAYYTKTLGWGDFPYHLI TDRFGNIYEGRRGALDSHPMGTHAGGFNRGTMGVSTMGNYDVVAPSEEVVDAMARATAYY LYRDGIDVRGRVTLTSGGSTKYAAGTPVTVDTIFPHRATSATACPGQHLMARFDDLRDRA EAIATAAGQPPAAVTPAPTPAPTTEPSTAGTYTVQPNDGWWTIARRTGVPAATLQELNGM TESTVLHPGMVLRTVADPTAPEPTPITTGTYTVQPNDGWWIIARRTGVSAAELQRLNGMT ASTVLHPGMVLITAATAPASPPAPAPTPAPAPGTYTVREGDGWWIIAYRTGVTMETLQRL NGMTATTVLHPGMVLRTGQTASAPAPSPATYVVQANDGWWLISQRTGVSMGRLQRLNGMT VSTMLHPGMVLRTA >gi|289556436|gb|ADCD01000095.1| GENE 19 19134 - 19463 292 109 aa, chain + ## HITS:1 COG:ECs3406 KEGG:ns NR:ns ## COG: ECs3406 COG2146 # Protein_GI_number: 15832660 # Func_class: P Inorganic ion transport and metabolism; R General function prediction only # Function: Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases # Organism: Escherichia coli O157:H7 # 5 105 4 99 106 88 48.0 3e-18 MAEPIHIGAAADVPEGEAIVVPAATAGTRDDVAVFHTDAGEFHAIDDTCTHEDASLAEGW LEDDRVECPLHAAQFCLRTGEALCLPATKGVGVHRVEEREGQLYLVPGA >gi|289556436|gb|ADCD01000095.1| GENE 20 19460 - 20749 853 429 aa, chain + ## HITS:1 COG:CC3525 KEGG:ns NR:ns ## COG: CC3525 COG0446 # Protein_GI_number: 16127755 # Func_class: R General function prediction only # Function: Uncharacterized NAD(FAD)-dependent dehydrogenases # Organism: Caulobacter vibrioides # 15 427 11 411 412 182 37.0 7e-46 MSHDVEAPAGVPGAVVVVGGGVAGFAVVRELRRRDFAGGIALVDPQGVPYDRPPLSKEFL TGDADAHRLLLAPPAWFAEHGVELVEDAAVRVVPGGVHPDGGPAPHRVETASGRVLDADA VVLATGGRPRALDVAGADHPDLVTLRTRADAETLRDRLTFGTEVAVVGGGFTGAEVAAAA RHALAAVTLVTGTDAPARAAVGPALATRLHRMHVEHGVAVEVGRAAWIEHRDADGGAALP AAHRLHLHDGRTVDADVVVLAGGTVPDTALAEDAGLEVADGVLTDAMGRTTVPGILAVGD AARARESAWAPSRHWEPALRSGAAAAAALLGEQADAPGAPWFWSDRYDAHVEAVGDMTVP AGGRIVDREVRGVVVASFALAADGTLRGAASIDDPMTVKAARRIIDRGIVVDPAALADPA VPVKSLARG >gi|289556436|gb|ADCD01000095.1| GENE 21 20810 - 22306 1102 498 aa, chain - ## HITS:1 COG:BH3939 KEGG:ns NR:ns ## COG: BH3939 COG0397 # Protein_GI_number: 15616501 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus halodurans # 24 498 30 492 492 394 47.0 1e-109 MTTSAPTLSSYFADTFPELVLPWQAQATDGPQLVLLNAGLAAELGLDAEWLATDDGVRFL TGEQPGPDARPVAQAYAGHQFGHYSPRLGDGRALLLGELTAPDGRLHDLHLKGSGRTPFA RGNADGQAVLGPMLREYVVSEAMHALGVPTTRALAVVATGHPVRRETMLPGAVLARTAAS HLRVGTAQYAAALPERADPTDVLRRIVDEAIARHHPHAADAGHPALALYEAVIAAQAELV SRWMLVGFVHGVMNTDNMTLSGETIDYGPCAFIDAFDPAASFSSIDAQGRYAYGNQGPIA AWNLARLGEALVPVLDDDPDRAVALAQEALGRFHGAHLAAWRGGLRDKLGLPTSVAEDDV AALTDRLFPWLAATRADWTSFWVRLAEHTAAPVDDDAARTEAARLVPGAPDPAGLAVWLA DWRAMGPDPARMRAVNPVYIPRNHLLDEALTAAEDGDLTAVHRLLEAVTDPFTPRPGFER YAQPGPADGAPFVTYCGT >gi|289556436|gb|ADCD01000095.1| GENE 22 22460 - 23410 515 316 aa, chain - ## HITS:1 COG:no KEGG:Mlut_20040 NR:ns ## KEGG: Mlut_20040 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 316 1 316 316 528 94.0 1e-148 MPRRPAPLPPSIDPAAFTVDDAHRAGVTWSRLQSADLRRLRHGIYGPAGPAAVSVREWTM DEIRAYQRRHPDVVVSHETAARLHGLTVPARLLAPGAVHVSVGTSGGRPVQAGLVPHRIE VPEGQRMTRGGVLVTTPARTLWDLCAARSALTERDVVVAGDALLCPPWLPGGGRGAPAYA PEELVRSLAERGRFQGRGLARAALARMRVGADSPRETRLRLALGDAGLPEPEVQCRLDPS DRRAPTVDLGYQPWRLALQYEGEHHRTAEQQARDVRRDRWCADHDWLSIKVMWADARDDY ADVVARVRRRAAEFGG >gi|289556436|gb|ADCD01000095.1| GENE 23 23620 - 24480 695 286 aa, chain - ## HITS:1 COG:STM1106 KEGG:ns NR:ns ## COG: STM1106 COG3836 # Protein_GI_number: 16764464 # Func_class: G Carbohydrate transport and metabolism # Function: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase # Organism: Salmonella typhimurium LT2 # 23 267 10 250 263 214 53.0 2e-55 MPVRHNPQPLFRDLFTPEAVTARGGRPAAGMFLSSGDPTTAEICAGAGLDYLLIDAEHAP LTLQDVLAQLRTIAGYRVPTLVRVPALDTVAIKQFLDLGAQTLLVPMVDDAAMARSAVAA AHYPDGSAEGGVRGVGSALARSGRWNRIPGYLPGAADHVSVIVQIETAAGVRNADEIAAV DGIDGVFIGPSDLSASLGLLGQQSHPEVVAAVEEVIAKVKAAGKIVGVNAFVPAQADAYA AAGADYVNVGADVALLARAAEALADRWCPTPSDAAAGGEGAPRASY >gi|289556436|gb|ADCD01000095.1| GENE 24 24625 - 25410 725 261 aa, chain - ## HITS:1 COG:STM1105 KEGG:ns NR:ns ## COG: STM1105 COG3971 # Protein_GI_number: 16764463 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: 2-keto-4-pentenoate hydratase # Organism: Salmonella typhimurium LT2 # 1 260 1 266 267 270 51.0 1e-72 MLDHETHVKIADELHRAGIDRVPVPRLTARYPQMEIEDSYAVQRIWAERQVEAGRRKVGH KIGLTSKAMQDATGIDEPDYGVIFDDQVFESGHVYEWKKYTHPRIEMELAFVLKDELRGP GLNLMDVLRATEYVVPALEVLDSRIEMAGRTITDTISDNAALGSLVIGGRPVGVHDVDLR WVAGILSRNEEIIETGVAAGVLNHPANGVHWLANRIAEHGDALEAGEIVLAGSFTRPMWV YEGDTVYADYGPLGTITCRFA >gi|289556436|gb|ADCD01000095.1| GENE 25 25711 - 26877 1122 388 aa, chain - ## HITS:1 COG:BMEII0136 KEGG:ns NR:ns ## COG: BMEII0136 COG0346 # Protein_GI_number: 17988480 # Func_class: E Amino acid transport and metabolism # Function: Lactoylglutathione lyase and related lyases # Organism: Brucella melitensis # 27 346 7 321 331 254 41.0 3e-67 MTNLESRQKTSSGFFVTKEALIDPENPLPTPTSEAPDILRCASMELVVTDLAQSREFYVD VLGLVVTEEDEETVYLRSMEEFIHHNLVLRQGETAAVAAFSYRVRTPEDLDKAVAFYEEL DCRVERRKDGFVKGVGDSVRVEDPLGFPYEFFHDVEHVERLAWRYDLYTPGALVRLDHFN QVTPDVPRAARYMQDLGFRVTEDIQDEKGTVYAAWMRRKPTVHDTAMTGGDGPRMHHVCF ATHEKHNILAICDKLGALRMSDHIERGPGRHGVSNAFYLYLRDPDGHRVEVYTQDYYTGD PDNPVVTWDVHDNQRRDWWGTPVVPSWYTDASRVLDLDGNLQPLVSRTDDSEMDVTIGAD GFSYTREGQGEESMPEWKQGEYKLGNQL >gi|289556436|gb|ADCD01000095.1| GENE 26 27139 - 28683 1609 514 aa, chain - ## HITS:1 COG:DRA0220 KEGG:ns NR:ns ## COG: DRA0220 COG1012 # Protein_GI_number: 15807884 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Deinococcus radiodurans # 19 495 31 502 524 466 52.0 1e-131 MTEKTSIEARKPAGLPDVLRHYIDGEFVDSIDGDTFEVLDPVTNEPYLTAASGKAADIDR AVAAAKRAFESGEWSQALPRQRSRVLHRIADIMETRGDQLAEMECFDTGLPIKQARGQAA RAAENFRFFADLIVAQHDDTFKVPGRQINYVNRKPIGVAGLITPWNTPFMLESWKLAPAI ATGNSVVLKPAEFTPLSASLWGGIFEEAGLPKGVFNMVHGFGEEGYAGDPLVKHPDVPLI SFTGESRTGQIIFANAAPHLKGLSMELGGKSPAVVFEDADLDAAIDATIFGVFSLNGERC TAGSRILVQRSVYDEFVERYAAQASRVKVGLPDDETTEVGAIVHPEHFEKVMSYVEIGKT EARLVAGGGRPKGFPEGNFVQPTVFADVAPDARIFQEEIFGPVVAITPFDTEEEALELAN NTKYGLAAYIWTNDLKRAHNVAQNVEAGMVWLNSNNVRDLRTPFGGVKASGLGHEGGYRS IDFYTDQQAVHINLGEVHNPVFGKQEQAAAKIDG >gi|289556436|gb|ADCD01000095.1| GENE 27 28764 - 29465 605 233 aa, chain - ## HITS:1 COG:mll2325 KEGG:ns NR:ns ## COG: mll2325 COG1802 # Protein_GI_number: 13472127 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Mesorhizobium loti # 17 214 41 233 255 68 30.0 1e-11 MRRTDIGMVGLAGAPVSKADRAYQAILEGIRDQRHEPGDRLVLSQIAAELGMSVVPVREA IRRLQSEKLVAYERNVGATVVGIDPVEYRHTMETLALVEGFSTAQCAPHVTAEDLAAARE VNATMRAMTESEKAWDPVAFTELNRRFHSILFEHHQNEHVHDLVHRGWNRLAALRSSTFA YVPGRAVASVDEHEHLLRLIEDGARFEEIEAAARAHRLNTLHAYLEHGAEPSA >gi|289556436|gb|ADCD01000095.1| GENE 28 29468 - 31066 1407 532 aa, chain - ## HITS:1 COG:AGl1765 KEGG:ns NR:ns ## COG: AGl1765 COG0684 # Protein_GI_number: 15890996 # Func_class: H Coenzyme transport and metabolism # Function: Demethylmenaquinone methyltransferase # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 296 520 4 232 236 149 39.0 1e-35 MTQSTPEPTPTVTEHDFTVRENRPGKVLAVHLNYPSRIAQRGRPPQAPGYFLKAGTSLAR SGDTIERPAGTELLAYEGEIALIIGRTARRVSPEEGWSHVSGITAANDWGLYDLRHADKG SNVKNKSGDGYTPLGPAVISAAGLDPAALRVRTWVNGEIVQDDTTEGLVFPFGRLVADLS QLMTLEEGDVILTGTPAGSSVAQPGDVVEVEVDAPSAPGAPTTGRLVTTVVDSEHSLAPF GAQPQVDDVQREEAWGSRQAAGLAPQAAAPSSSAVDENGHWVASAPQPDRSLLTPQLRAK IDAIAVATLTAQLQKRGIQNATIDGPRPIHRGRRVLGYAKTLRYIPKREDLFKEFGGGFN AQKRAIDSVQPDDVVVMEARGEHGTGTLGDVLALRAQVNGANAVITDGGIRDSAAVAEVG LQVYAGATHPAVLGRRHIPWEVGGTIACGGTTVQPGDIIVGDDDGVVVIPPSLLQEVVDD AYEQELQDAWAYEQVKAGYPVDGMFPPNAEWQAKFAEYRKTLPDAPAPEGDA >gi|289556436|gb|ADCD01000095.1| GENE 29 31161 - 32375 1034 404 aa, chain - ## HITS:1 COG:Ta1193 KEGG:ns NR:ns ## COG: Ta1193 COG1167 # Protein_GI_number: 16082202 # Func_class: K Transcription; E Amino acid transport and metabolism # Function: Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs # Organism: Thermoplasma acidophilum # 15 400 12 398 402 270 33.0 5e-72 MRNLRDHLSQRAVGVKQSAVRDVFDIAMDPNLVSLAGGNPWLADLPLDELGRIASDLMTR FGTESLQYGPGQGTEEMRAAATAVMAADGIPDADPDLVVITPGSQAAIDTACRAFANPGD VVVVEDPTFVGALTTFNTWQLEAVATGTDDHGLVPAALDETLTRLAAEGRRVAFLYTIPS FANPSGALLPPGRRAEVGAICEKHGVLIVEDNPYGQIAFDGEPVAPIAADHRDNVVYLGT MSKIFSPGVRIGWALVPAALKREFYLCAESAYIHASTYSQMLSTAFVTQLDWQGHVRHVT GLYRERAAALVDAVREHWDPAVEFITPQGGFFLWATLPVGVDTLEVMHRGIEAGAVFVPG AAFTPVEGTHSTLRLAYSFVDAEKLVEGVRRLAPAVNESIARAR >gi|289556436|gb|ADCD01000095.1| GENE 30 31266 - 33365 654 699 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MRALDGGEGRPRHEHRARLDAAVHHLEGVHPDGQGGPQEEAALRGDELDRRVPVLPHRVH ERRGPLAVQPGHVADVALPVQLRDEGGGEHLRVRGRVDVGGLRAQVELALERGRHERPAD AHARGEDLGHRAEVDHVVPVVGGDRGDGLAVERDLPVRVVLHDEHAVLLADRAHLGAAAR GQQGARRVRERGDRVEEGHASALGGQAGQGLVEGRGHQAVVVGARGHGLELPRVEGGQRA HERGVLHHDDVARVRERPAGRVDRGLRAGGDDHEVGVRVRDAVGGHDGGRGGTHLLGALA GAVLQGLRAEPGHQVGGDPAQLVEGQVGKPRVPARERDEVRVHRDVEDVADRGLLHADGA LGQVISEVPHARHPIARRGRARTSDDGRRRRVARSGGARLLTGGPCALGRLGGTPRRLLG RRPGVVRGLGRSPGRGVGRSPRVLRRLALRRPRLLTGSVARLPTRRGVPLWDVHGLAEAE RLEPQHVVEVPAVHLEPDLSRGREGGGGRLQLGADPLGRAVVLRRHGAGEGEDLHVALAA VPGQGEGLARVEHGVPQRRVAVPALLVREQEVQGGVRLVLGVRRHGLHGHQQVAAAEGPA ARPRDRLRLRDGEVDRQRLIPLRRGQGHAVVGRRVLGQAGVDRAAGQQARGCHGTREPQG AGRGGRAHRVLLAVGARRRRTGRRPLHATAVRLARSERM >gi|289556436|gb|ADCD01000095.1| GENE 31 33428 - 34273 800 281 aa, chain + ## HITS:1 COG:MT3160 KEGG:ns NR:ns ## COG: MT3160 COG2301 # Protein_GI_number: 15842645 # Func_class: G Carbohydrate transport and metabolism # Function: Citrate lyase beta subunit # Organism: Mycobacterium tuberculosis CDC1551 # 15 278 25 286 307 209 48.0 3e-54 MPVRNRRAAALPAKLSRSWLLVNAATPDAFAPALASEADSVIFDLEAAVPEEHKDAARQH VVDALSGGMTAWVRISATSTDHWQRDLEALAGLDGVRGVVLAETEEPEQVTFTAMRLRAG TPVIALLESALGIENATAVAKAPGTFRLAFGVNDFRKDVGVGEDPLAMAYARSRMVIASR VGGLPGAIDGPPGNTDGEDAVVDSSAVTASMGMTGRLVLNRDQVDWVNRAMSPSEDELAW ARDLLEKHAQGAAVGDGSYLPRVLRAQKIADLADSYGLWNA >gi|289556436|gb|ADCD01000095.1| GENE 32 34325 - 34810 466 161 aa, chain + ## HITS:1 COG:L31711 KEGG:ns NR:ns ## COG: L31711 COG0586 # Protein_GI_number: 15673772 # Func_class: S Function unknown # Function: Uncharacterized membrane-associated protein # Organism: Lactococcus lactis # 1 123 1 123 160 59 29.0 2e-09 MMAWIDGLPLLWSIGFLWMLAILRTLIVFSLGRGLASGVERTRWFARVMEGPVYVRAQRF IQRHGVWAIPFCYLTVGIQTAVIGSAGVARMPWRRFLPPAALGTFLWGVVYGTVGMAVVW AVIGAALGEGRGVLALVLILAAVAAFVVWRRRRTLRRHGAG >gi|289556436|gb|ADCD01000095.1| GENE 33 34918 - 35862 955 314 aa, chain + ## HITS:1 COG:Cgl0764 KEGG:ns NR:ns ## COG: Cgl0764 COG0214 # Protein_GI_number: 19552014 # Func_class: H Coenzyme transport and metabolism # Function: Pyridoxine biosynthesis enzyme # Organism: Corynebacterium glutamicum # 25 314 30 319 319 432 84.0 1e-121 MSDERALSFSASTASAADDGARGTGTTRVKRGLADMMKGGVIMDVVNAEQARIAEDAGAV AVMALERVPADIRAQGGVARMSDPDLIDGIVEAVSIPVMAKARIGHFVEAQVLQALKVDF IDESEVLSPADYVNHIDKWDFDVPFVCGATNLGEALRRITEGAAMIRSKGEAGTGDVSEA VKHIRTIRKEIAQLQGLAQDELYVAAKELQAPYELVREVAETGALPVVMFTAGGVATPAD AALMMQMGADGVFVGSGIFKSGNPAERARAIVKATAQFDDPMAVAEASRGLGEAMVGINV GDLPAPHRLAERGW >gi|289556436|gb|ADCD01000095.1| GENE 34 36021 - 36491 391 156 aa, chain + ## HITS:1 COG:TM0472 KEGG:ns NR:ns ## COG: TM0472 COG0311 # Protein_GI_number: 15643238 # Func_class: H Coenzyme transport and metabolism # Function: Predicted glutamine amidotransferase involved in pyridoxine biosynthesis # Organism: Thermotoga maritima # 1 153 51 184 188 126 43.0 2e-29 MDRLARIMGLKDPLIAALRDGLPAYGTCAGLIMLAREIRNPAPDQGGLGVLDVAVRRNAF GAQVDSFEEDLDVPAVTAEPVHAVFIRAPAVVQAGEGVEVLASVPASRLSVPAAEPGLDG DARLPVAVRQGHLLATAFHPEVTGDWSFHRAFLAGL >gi|289556436|gb|ADCD01000095.1| GENE 35 36528 - 37670 1019 380 aa, chain - ## HITS:1 COG:MT2850 KEGG:ns NR:ns ## COG: MT2850 COG0686 # Protein_GI_number: 15842318 # Func_class: E Amino acid transport and metabolism # Function: Alanine dehydrogenase # Organism: Mycobacterium tuberculosis CDC1551 # 1 356 1 357 371 396 61.0 1e-110 MLVAVPTEVKNNEFRVALTQGGVQELVRAGHQVLVQSGAGVGSGASDQDYRDAGAELVDD VDELWERAELVLKVKEPQPEEYDRLRRGQVLFTYLHLAASPACTRAILDAGTTAIAYETV TRGRSLPLLAPMSQVAGRLAPAAGAYHLLQPQGGSGVLMGGVPGTRRARVAVIGGGVAGE AAAVIAAGMGADVTVLDISLERLAQLDAVHQGRIRTLASSHLNIGETVADADLVIGSVLI PGAAAPKLVTAEMVESMRPGSVLVDIAIDQGGCFENSRATTHQDPTYLVGDKIYYCVSNM PGAVPQTSTAALTNATLPYIKRIADLGWRAALAADEGFAGGLNAHDGVLTLPSVATAVAD ELGLDLRKDVRVTSEVLAEA >gi|289556436|gb|ADCD01000095.1| GENE 36 37715 - 38212 279 165 aa, chain + ## HITS:1 COG:no KEGG:Mlut_19890 NR:ns ## KEGG: Mlut_19890 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 20 161 21 162 165 153 77.0 2e-36 MTPALISLVAVLLLLVGLVGTVYPVLPGSLLNLVTALGWAALLGSPASWTFGVIAAGLAV AGLSASAVLTGRRLRRERVTRGPILWGVAGAAVGFFVIPVVGLFLGFAVGLFASQWARTR DARTALSSSIGALTAMGVGMLVEFCCALGSLTAVGVGALVHGLTA >gi|289556436|gb|ADCD01000095.1| GENE 37 38268 - 39056 642 262 aa, chain - ## HITS:1 COG:Cgl2852 KEGG:ns NR:ns ## COG: Cgl2852 COG2186 # Protein_GI_number: 19554102 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Corynebacterium glutamicum # 26 249 5 222 231 150 40.0 2e-36 MDGRRPAPSGRRPAPSEGPSMTAAPAYTIVLDWLEAELRSGAVVVGDKLPGERTLAERFG ISRASVREATRMLEAMGLIRASAGSGPNSGAVVVSEPSAALGWALRLHIATRSLPMADVV AARVLLETDAAQAAAATSGDPESVAVLAEVETLLDRMDDPALPEEDFHLLDTEFHVRLAT LGGNVVTAMMLDSLRQATIGYVTETVAGLSDWPAVRAGLQADHRRILAASAAGDGRAAAQ ELREHVLGFAALAQAGRVPAGG >gi|289556436|gb|ADCD01000095.1| GENE 38 39097 - 40758 1493 553 aa, chain - ## HITS:1 COG:BS_yvfH KEGG:ns NR:ns ## COG: BS_yvfH COG1620 # Protein_GI_number: 16080472 # Func_class: C Energy production and conversion # Function: L-lactate permease # Organism: Bacillus subtilis # 11 550 11 563 563 359 42.0 9e-99 MHTFTPTPDAAGSVALSAALGVLPLLTFFATLLGLRLKAWQSGLAALVVALLVAVLGFHM PAHLAALAAAQGATFGLFPIVWIVVMALWFYQVTVLSGRFDDMRAIFDSLGGGDIRIQAV LIAFCFGGLLEALAGFGAPVAITATMVLGLGVPPLRAATAVLLANTAPVAFGAVGTPITT AGTLTGIPATHIGAIVGHQAPFVAVFVPFLLVFIIDGLRGVRQTWPALIVIGASFAVAIW LASTYFSYELTDVVASLVSLAAAVLLLRFWRPRGAEEARQRLDAPARAAAQDLTPGRIFM AVLPYIVVVAVFALAKLVPSITAALNSATAKIPWPGLDGHLVDASGAPLASTVYKFEWLA SPGTLLLIAGLIMAVVYSRFDHDGRFPLSVGNAIAEIGRCFARMRWSALTIVIVLSLAYV MNFSGQTVAMGTWVAGLGAAFVFLSPVLGWLGTAVTGSDTSANALFSTLQQTAATNIGAD PALLVAANTSGGVVGKMISPQSLAIAATAVGMEGRESEILRRVVVWSLVLLLAVCTLVYL QSNVLAWMLPAAG >gi|289556436|gb|ADCD01000095.1| GENE 39 40960 - 41823 743 287 aa, chain + ## HITS:1 COG:DR1907 KEGG:ns NR:ns ## COG: DR1907 COG0247 # Protein_GI_number: 15806907 # Func_class: C Energy production and conversion # Function: Fe-S oxidoreductase # Organism: Deinococcus radiodurans # 1 253 1 241 247 247 51.0 2e-65 MRIALFATCIVDAMYPKVALATVRILERLGHEVVFPPGQVCCSQMHVNSGYVADALPVVR NHVRTFMKADYDLAVAPSASCVASLGHQQPDVARSGGDEGLARDAEVVASRTLELSQLLT DVLGVTDAGAQLGSWFPHTVTYHPSCHGMRLLRLGSRQEDLLRTVADIDLRPLPDAEECC GFGGTFSLKNPDVSAAIAEEKIEKVTASGASLCTGGDASCLLHLDGAMHRREARGQDGRP LRTVHLAEILAATRENPLDVDGPVELSIPASAGARRGPSARVEEARR >gi|289556436|gb|ADCD01000095.1| GENE 40 41820 - 43460 1346 546 aa, chain + ## HITS:1 COG:DR1908 KEGG:ns NR:ns ## COG: DR1908 COG1139 # Protein_GI_number: 15807655 # Func_class: C Energy production and conversion # Function: Uncharacterized conserved protein containing a ferredoxin-like domain # Organism: Deinococcus radiodurans # 29 361 12 343 347 422 63.0 1e-118 MSTAPTRVSLGMPTVRPVHGEGEILLNTPFPESAREQLGNGQMRANIRRATHTIRAKRAG VVEELPDWQELRAAGSALKQSVMADLPALLERLESEVTARGGVVHWARDAAEANRIITEL VTAKGVDEVIKVKSMATQEIGLDAALEHAGVAAVETDLAELIVQLGHDRPSHILVPAIHR NRREIRDIFLREMPETDESLTSEPADLAEAARRHLREKFLSTKVAISGANFGVAETGTLS VVESEGNGRMCLTLPETLITVMGIEKLVPTFEDLEVFLQLLPRSSTGERMNPYTSMWTGV TEGDGPQEFHLVLLDNGRSAVLSDPKGRSALHCIRCSACMNVCPVYEQTGGHAYGSVYPG PIGAILSPQLTGVDAGENGTLPYASTLCGACYDVCPVAIDIPSILIHLRDEDVQATHAAR KALRTEKDAAGGPLARAKTAVESVTPSQMDVAMKGASVVMSSGRRMSLAERGLGLGRVAA GPDRVLGWLPGIAGGWTDERDVPAPPRESFRNWWARHKDETEHRTALDGVAGLDRQEDEH VEEDGR >gi|289556436|gb|ADCD01000095.1| GENE 41 43457 - 44152 497 231 aa, chain + ## HITS:1 COG:DR1909 KEGG:ns NR:ns ## COG: DR1909 COG1556 # Protein_GI_number: 15806908 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Deinococcus radiodurans # 2 227 8 211 212 120 39.0 3e-27 MSEAKAEILRRIREATADGPVADPVQRTYRRTSSRDRAEVVEMLRDRLIDYRASVRDETE ETVAAAIAELLGPDARYVVPAGLESDWLPADSRGAGRARITEPAVGHTGERAAVRGAHDG EREPLSVDALNEVDAVVTSSTVSCAETGTIFLTGRPDEGRRAITLVPDHHVCIVPLDSVV ELFPEALARVEATAPITMISGPSATSDIELERVEGVHGPRRLDVILLDRAR >gi|289556436|gb|ADCD01000095.1| GENE 42 44579 - 46276 1609 565 aa, chain - ## HITS:1 COG:SPBC23G7.13c KEGG:ns NR:ns ## COG: SPBC23G7.13c COG0591 # Protein_GI_number: 19112663 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Na+/proline symporter # Organism: Schizosaccharomyces pombe # 10 434 6 459 664 97 24.0 5e-20 MPPSQDAASLTQLGVIGVILLVVLFYGGTMIMSVVISKKKENADAYMTAGNQIGFGVSAA SMTATWIWAASMYASVTAGYTYGVSGPLHYGLWGALMILFIYPFGRRIRAVAPRAHTLAE VMYARHGRSSQLMLAGSNVLGSVISLTSNFIAGGALISLLSPLSFGAGILIVAAGVLLYT LWSGFRASVLTDFAQVMAMLGATVIIIPAVFFAAGGPDMFQAGVEAGHVTAQQQSFFSSD AFMNQGAPYIAAVLAYAIGNQTIAQRLFAVREDLIKPTFVTATLGYGGTVIGVGMLGVMA LYLGVEPLDGDVNNLLPQMVADHLPLALVALAFLMIIGSLSSTADSDLSALSSIVMTDVY GQSVGRQDADPKTMLLIGRITMIVATAAALYFATAKFDILDLLVFVGALWGCLVFPVIAS FYWGKITNVAFTVSVLAALAVFLPVRFEWIPIEGAWAFVVETLAILGVGVVLGIMCFGFF GLRPAIVVGAVASAVMLFLGYGFLRDYATLTGSLVAYAVSFLVCWGLSVRSGQDFDFDRI ARVTGDFDPATEDLPQVERAAAPVS >gi|289556436|gb|ADCD01000095.1| GENE 43 46630 - 47040 203 136 aa, chain + ## HITS:1 COG:no KEGG:Mlut_19790 NR:ns ## KEGG: Mlut_19790 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 39 136 39 136 136 143 90.0 2e-33 MTVPSGPPAAPSAPASRRRRRALTAALAVAVVVQLVVLYLPGEQVPEAGFAVPGLDKAIH VAVFALPAFLAVGRGRSAWWALPFAVHAPVSELVQHAWVPLRTGDPVDVVADLAGVVLGV VAARHSRIGGSGAAGV >gi|289556436|gb|ADCD01000095.1| GENE 44 47393 - 48520 934 375 aa, chain + ## HITS:1 COG:alr1000 KEGG:ns NR:ns ## COG: alr1000 COG0438 # Protein_GI_number: 17228495 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Nostoc sp. PCC 7120 # 1 344 2 343 360 98 29.0 2e-20 MRISVLTHMLHPIRSPYEGGLEMHTAMTVEHLVRRGHDVTVYAREGTRLPGDVVAVLPAE GAGPGRAGARVREEAARRACALILDDDSDAVLNNSLSPAPLELLRARPMVTVLHTPATLA EVLAVVDAPDWTAPDHHRWASVSASNALAWQHRLPRVDVVPNGIELHHWVSDAVPVRGRA VWSGRITAEKGLHVAIDAARIAGMELHFAGPISDEEYHAREVVPRLGPDTVYHGHLDHQT LPHMLATGEVFLATPLWAEPFGLAVVEAMALGVPVAALLSGAMGEIVAPQAGALAVHHTA QELAVSIRHARRKDRGRVRAWACRFSAETMVEGYVDLLEQAAEDARDLAAAEDAYGFDPQ GVPRPSADAADLESL >gi|289556436|gb|ADCD01000095.1| GENE 45 48520 - 49611 659 363 aa, chain + ## HITS:1 COG:no KEGG:Mlut_19760 NR:ns ## KEGG: Mlut_19760 # Name: not_defined # Def: predicted glycosyl transferase # Organism: M.luteus # Pathway: not_defined # 1 363 1 363 363 509 98.0 1e-143 MAPARRRVLYYAHQHGAGHLRHAAGLASTGAFDVTVVTAHPRAAELLPADVPVIPLPSDL VPGHQQPARSPLHWSPVGPEIRARFDALHAAAQRVDPDVCVVDVSVEAALFLRLAGWPVL HRRMHGERTDPAHALVYAEADGLFAHYAAELEVPAWRAAHADRVTYLGVADVTGRLGTRA TTTSPAGAAPRVAVIAGTGGGGVRAADLARAASAVPEATWEVYGPIAGVGDPEAPGGLAA EAMPATVTLHGWVQAPARRAADADVVVVSAGHNAVVDAARSGRPVVLAPEPRPFDEQRVF VREIHRAAGVPWCAWEDPDADWAGAVGGALADPAAADRLAGLLLVAPDEYRRRWEAAIEG ALG >gi|289556436|gb|ADCD01000095.1| GENE 46 49698 - 52925 1803 1075 aa, chain + ## HITS:1 COG:no KEGG:Namu_3370 NR:ns ## KEGG: Namu_3370 # Name: not_defined # Def: hypothetical protein # Organism: N.multipartita # Pathway: not_defined # 712 1073 12 365 378 154 37.0 2e-35 MTQQLEPLALGVPRDQPRVRERAQPPLHGPSAVHLPEAAGVDQDVLEVVQRRGHHPVVLV ERLGGAEPQRQAGVAGAEGQVRVLGAVAGEARVETADAGQVRAAQRQDQRPHEVPLVRGP GGQVRARPVGHGEAAQQGVGAVRGQVGLPDVAGPARPQVAGPAHHHGPGVGRDLGGQHAD GLGRRDAVHVEEDEDLAGGELGRAVAGLRQGQPGFGGHVPHRDGQVRGRDAAVRLAHEDH DHLVRAAVGAFQPGDHAGQVLVPVSRDDQHGHARQCPARPGEGLAVDGHVGGGHATALPG PGGRVGGGRARAGAHQRLERVGEGVGILRVERGERVGGQPGAGLVRDVPDVRDGHRHPQV PAHLHPARVGADAVRQHGHVHVAQQRVQGGVVEPVVLPQLEAVVGAACAQRGQGVLVLHG VLDLHGHPRVDTAVGQRPDGGGQHRQQRHRGHLGPQVLGVHQQAGGGGRAVAVVGRVGGQ RTGRRTVVVVPCREVLERDDVRVGDHEGAHAVVAGEGRRGAGGEREHGVRAAQQHGQAVP VGALVRQVRVLEVVHGHDDGAAVRVLRVQGGGQLGGAEVLEPEVHVQHVRAVLGQPLRVQ GPGRPPLVRGRARHRRVRQELHVRRGARVEGADRAGVRVLRGHVLDGDAHGGGPPDLGDA MPRGRRVPVPGRGSRNLVCQGRIGESEQRHPVRSGAPPRRGAPPQVKGIVDVDSQPQGRV LYVTVGAPEHGVVRHGRQTAAALRQVGAEVELLTAEDVAAFRGLVPLLEEARALGAAVHL DVTDALFGPTATAAADLLVDVLPEGTTLTLHDIPQPAEGDGRYRRRGEAYARLAQAADGV VVSSQHERALLADLVDVAADVVPLPVEDRRAAAARAEPVVPESMAGLDRDLVLFGFVYPG KGHALALEALTELHRQWGPDSGAPRRLTALGPVSIGHDDLVAELTRDAEARGLEFRVTGF VPDEFADAALLSAGIPFAAHRNVSASGSLAAWTSVGRRAIASAGRYTEEMARLRPGTLRL VHPNGSPAFAMAEAIAEAVEDPERTWLGPGVDLSPGAEDCARMLFDVLRRVHRWT >gi|289556436|gb|ADCD01000095.1| GENE 47 52946 - 54301 844 451 aa, chain + ## HITS:1 COG:PM0775 KEGG:ns NR:ns ## COG: PM0775 COG0463 # Protein_GI_number: 15602640 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Pasteurella multocida # 1 341 157 513 965 82 25.0 2e-15 MPYYRAQADLDRLTAALAAQRGLTGGLQLVVADDGSPVPPRVDPGLPFDVVTVRQQDRGF RASAARALGAEAADGDVLAFLDGDMLPEPGYLAAALAAVAEAPRDAAVVGRRRHLAEAWL ERAWAEGWRPGDEVPADARLAEPAWLREGYRATDGLRRADSTGYRYVISAVLAVAREVYE DAGGFDPAFVGYGGEDWELAHRLWRVGAALRHAPDAVAWQAGADFGGRGDAAEAARVKAR EALVLASRIPATTARGHGLSLAGPLRVEARVRVPEGADGAAAAVVAVDAVLRAAPGARVG VVGGLDEAAARALGDPRVRLLGEPDGGAAASQDLPPTPARGDLDAVRSVPDWSVDVHVPL RPAAAGARPDADAVAAWLLRLERAGVERVEVLGEPGERAERDVLAVLTCARARWRRRRGG TARVWRVPASRLGWAPAAAVPDLEAWWGGWG >gi|289556436|gb|ADCD01000095.1| GENE 48 54361 - 55287 502 308 aa, chain + ## HITS:1 COG:no KEGG:Mlut_19710 NR:ns ## KEGG: Mlut_19710 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 308 1 308 308 469 93.0 1e-131 MSELDELDFVAVEIHTAGADPASVCAVDMALVRGGEIVAAERWPVRPPTGPTSFSRLHTQ LHGVDEAAVADAPDWPEVAAQLDLLGEHLPFVASGADRDRGAYEAATRATGGTPQEHEWR DALALVGRLRPDVTPPRITTAAQALGVPDGARPAGAGSEAVRTAEVVLALARQSGRGTVR RLWSEAAPPAPDEPIIPESLRQRHGAEPSVPPAGAHRWAPPSPAPVAASAAPAARGGGVG WKLAGTAMVGIALGAALFFVASVSVIMEYLEDGRGSDATAGMGIAALSAFLAWWFGKTGV GWIRREDG >gi|289556436|gb|ADCD01000095.1| GENE 49 55011 - 56258 674 415 aa, chain + ## HITS:1 COG:no KEGG:Mlut_19700 NR:ns ## KEGG: Mlut_19700 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 99 415 1 317 317 537 95.0 1e-151 MGAAVAGTRRGVRGTGRARGRRGLEARGHGHGGDRAGRRPVLRGERLGDHGVPGGRARLG RHGGHGHRGALRVPGLVVREDGRRLDPARGRLRREDAGVHEDEGRRRHYGHFYGLEDLPE GDLLLVWGNCQGESYRRLLGGEPGTPLHGADLVSVRVPPAFEAQPDEVAHLERLLPRVKA LVTQPIPHDYRGMPIGTDQLVARLPEDAAVVRIPVVYDVSRFPWQVTLRNWKFAPGAAER PGEDPPVVPYHDLRVLAEAATGRRREVAPAAIREAAAASVQALRAREEAKGTLSMADLVA AERGVGFYTVNHPTNTVLTRVAERVAAHLPGDVAVQPVPASRVLLGGVRAPLEAVVVEAL DLDAEPTEDWTVAGQTVPAERLREVHLDWYAQNPQAVEVGMRKYADQLRLLGLAG >gi|289556436|gb|ADCD01000095.1| GENE 50 56503 - 57552 784 349 aa, chain + ## HITS:1 COG:PA2345 KEGG:ns NR:ns ## COG: PA2345 COG0446 # Protein_GI_number: 15597541 # Func_class: R General function prediction only # Function: Uncharacterized NAD(FAD)-dependent dehydrogenases # Organism: Pseudomonas aeruginosa # 6 348 57 403 411 143 29.0 4e-34 MLNYAAGGQADMARFERPMRSVIPDGVEWIPDHVVAVDAEERTAVTTTGLTVGFRHLVLC PGLTPWWGAIDGLREAYAAGWAASAHVPEHVDAARALLSRVAAGDRVVANVPAEPSSCGG TVLKALFLACAAWERTGILPDVDVHLVTPYGRILDRQTIDPALAEAVARYGIHVHAGAEV NAVDHEAREVVLNTGERITDVAAAYITPVVRAPEFIAEAGLADDGEAGLAAVDPETLLHP VHPHVWALGDAAALGTRPSGGALRRQVKILAQNIQAADAGKPLQKYDGYTVIPVMVSRDE LVLDEHVRDGSEDRSIPGVDLTKPRKSTAAFDRFGQPRIYWHRLLKGKV >gi|289556436|gb|ADCD01000095.1| GENE 51 57723 - 58484 665 253 aa, chain - ## HITS:1 COG:no KEGG:Slin_5113 NR:ns ## KEGG: Slin_5113 # Name: not_defined # Def: protein of unknown function DUF1264 # Organism: S.linguale # Pathway: not_defined # 42 240 40 239 253 230 50.0 3e-59 MSTHRLSSTALGFAAGLGTAAAVTAARKIALMGAVGKGHPLKHRLLDAASGLVQPKYPMG AMSTYLNGLHFYADDLGRQVEASHFCIHLRHDLHQCVIFDRNAPDARLIGIEYIISEERF RNLPDEERRLWHSHHYEVSSGALTAPGVPELAEHSYFEDLIHTYGKTFHTWQYDRDDFPY GIPQLMMGLTGDGQVDEALLRARDERVGVDTAAKRRNRADIPVPDVVPGANSWERGRVVQ TTLEERPVRGRDD >gi|289556436|gb|ADCD01000095.1| GENE 52 58573 - 60258 1268 561 aa, chain - ## HITS:1 COG:BS_phoD KEGG:ns NR:ns ## COG: BS_phoD COG3540 # Protein_GI_number: 16077331 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphodiesterase/alkaline phosphatase D # Organism: Bacillus subtilis # 51 529 26 512 556 436 47.0 1e-122 MSRAVWTDVVPADRPTQPSPSGHARVTRPCHPARVTSHTDPAHPTAHPVSRRTLLGGAGL VVASAALLSTPAGTAHAATGPTPFTLGVASGDPWPDGVVLWTRLAVDPLALDGLGGMPDQ SFRVEYQVATDEGFRKVVRSGAVTTDRAQGYAVHVTLTGLRPGTEYFYRFRALGHLSRVG RTVTAPARGSNPSRLTMTVASCANWEHGYFTAYGHMAAERPDLMVHLGDYYYEIMPYGYP VSSGVPRAHRNGESRTLAQYRARMAQYKTDPHLQDAHAAAPWLVIFDDHELENNWADETP EVWDPNFLARRVAAFQAYYENMPLRASSVPRGVDMQLYRRIHWGNLATFHLLDTRQYRSD QANLDLVKVVDADARDPRRTITGAAQEAWLREGFETSVARWDLITQQVPFVQYDRTSGPL LWGDMDTWDGYVASRDRVVSAWTAAGVRNPVVLTGDIHEAFASNIKQDFNDLSSESVGVE LITTSITSGGDGSDAAAEALAWNPHIKFNNDLRGYLRVDLSAQMLEARFRVVDYVSELGS SVRTRAVFGVGDGEHRLHRIA >gi|289556436|gb|ADCD01000095.1| GENE 53 60393 - 60668 186 91 aa, chain + ## HITS:1 COG:no KEGG:Mlut_19670 NR:ns ## KEGG: Mlut_19670 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 12 91 39 118 118 130 96.0 1e-29 MTTAVRTCAASACAFNAESSCNALAITVAGSDRTPGCGTFVQLDVRRPVAEGASTVGACH RLECTYNADLACTAEGIEVTDVATCATYTID >gi|289556436|gb|ADCD01000095.1| GENE 54 60678 - 61505 676 275 aa, chain - ## HITS:1 COG:no KEGG:Mlut_19660 NR:ns ## KEGG: Mlut_19660 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 275 1 275 275 402 95.0 1e-110 MARASTHPAHPLPPVAPRRLLLAQRLLRGEGSVEVTAFRAGETLTTAVHGVSTDGRLVVA HVPNLLGSLGAFHTPAPLDVRVDVLRDALDLTLPTRLASVHLLGTLRWCRDSAEVAELGL RGRVADLVADVGPRVRVGVVETQRILLHDVDGVAVFCRHTLPLTSRGLIDQAELADLADD VLGTAPEVLADLADAVALGLLPGESTPLQVDTEPLPESPAHALDADETGVTLLRARDGET TAVHVALPGAGRLDHSPRHAWRRLLDAIPARVTHP >gi|289556436|gb|ADCD01000095.1| GENE 55 61702 - 63327 740 541 aa, chain - ## HITS:1 COG:no KEGG:cauri_0636 NR:ns ## KEGG: cauri_0636 # Name: nifA # Def: Nif-specific regulatory protein # Organism: C.aurimucosum # Pathway: not_defined # 1 509 85 569 572 154 28.0 1e-35 MAYLSLNDHAAGETYIRRAEGVVTHAYRTIRMPIGTGVLGKVAEGLAPFQSLDYSNDPTI THLPQVDHAVQAEGVHAIMGSPLVVDGRPLGALMVAERRARRFTHSEVTIVESLAKHAAI AIQNAHRYTEALNAAGRADADRDHERESLRELTRLDELSSRQCQSLLEEPNETAVLNRAA EHLGVEVELLSPERPTSPLRPAPTLPSRHTAGVAHEVEAPDGCTWTLVPADRDARDWLAV RRALDPAEEKALLRTAQHLLLARRLRSARRATELEAGAGLLAELVDDSAGGIVRRRRALA ELGLREDSQVSLVVIDLAAVPEPQFAERVLSPVAGVRLSAPRGGTWCVVGDRPDVPARVE AAVRHATEAVWQMAFLGPGEHFRDLPGAFHTLENALAVSRVAGGLHAVDASTVGAVGMVL AGAGEASKDVTARPLAPLRDLPPQRASALRETALVYLDAGMNVAETSRRLFLHRNTVLQR LEQLGAVLGPDWHTPPRSLDLHLALLSAARDDGGAPGAPPARSQPRRRAEELRRSRKRTR E >gi|289556436|gb|ADCD01000095.1| GENE 56 63585 - 64688 614 367 aa, chain + ## HITS:1 COG:MT0171 KEGG:ns NR:ns ## COG: MT0171 COG1062 # Protein_GI_number: 15839541 # Func_class: C Energy production and conversion # Function: Zn-dependent alcohol dehydrogenases, class III # Organism: Mycobacterium tuberculosis CDC1551 # 3 367 15 379 383 398 62.0 1e-110 MLIRGAVLEEIGRQRPYASSRPLTISDLELDPPGAGEILVRMEASGVCHSDLSVVNGHRV RPVPMLLGHEAAGIVEELGEGVDDVEVGQRVVMTFLPRCGECDACKTDGRLPCTPGTEAN NAGVLLGGGVRLHRDGDEVFHHLGVSGFATHAVVNRKSVVPVGSDVPAAVAAVLGCAVLT GGGALLNAAAPEEGDSIAIVGLGGVGVACLLTAVASGVQEIIAVDMSEEKRELALSYGAH AAYSPEEMAERGIKTTHAVECAGHPAAFTTAFNATSPGGRTVTAGLPSPEQTAEISPLTI TGEARTIIGSYLGTSVPARDIPRYEQMWREGRLPVEKLVSATMRLDDINEAMDQLADGRA VRQIIEY >gi|289556436|gb|ADCD01000095.1| GENE 57 64700 - 66112 1043 470 aa, chain + ## HITS:1 COG:no KEGG:Oant_2946 NR:ns ## KEGG: Oant_2946 # Name: not_defined # Def: hypothetical protein # Organism: O.anthropi # Pathway: not_defined # 15 456 8 449 453 658 74.0 0 MTTTAHHSLDEEGIGEVSPHWKAGPFQIRLPFVHYRFEWPDYVQGLLMCAVDLAAIPLMV ELLGMPFEVALAVVVFNGLLYLTHHLLGDPVVPGWITPAIPLVMAYCSAFPEGEERVHAL IAFQFMLGVFSITLGATGLASKVVSLIPSAIKAGVLVGAGIAAVQSLFVAGGRFETFPVT ITIAVGIAFLLLFSSRFAAMRTKNPMWRTIGNLGILPVILLAVVIAPLAGEAPWPTIEWG FNTPDFAGLFAGYTIFGIGLPPASMFLTALPTVLATYIVVFGDVLQARAILKEADQIRTD EAVVYNPDRAHLIFGGRNTIMSMIGPDVAMCGPIWSAMHVVIVERYKEGRKAMKSIFGGA GSFRWGTNTGLLLLPIVTLVQPVLGVALALTLLIQGFVSVKVGIMEARSVKDLGIAGVTA AVLASNGAAWGLATGVILCLVVYGRDFFRGEPDATFEAMLRAEEGQAAES >gi|289556436|gb|ADCD01000095.1| GENE 58 66025 - 66510 120 161 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTLGRQLREEPPVRVHDRLHAAQDGERKDERAVLVRLEHAPQLIRDPPHEVREVLGRGHG GGAFRSTAVRQSASFWHGDIPGLGSRPARPLPTPTQFIARALRQPDPRTEAPVCVALNDA SRGPGRRLRHVRRQLSAAWPSSARSMASKVASGSPRKKSRP >gi|289556436|gb|ADCD01000095.1| GENE 59 66334 - 68295 1774 653 aa, chain + ## HITS:1 COG:CC0620 KEGG:ns NR:ns ## COG: CC0620 COG0286 # Protein_GI_number: 16124873 # Func_class: V Defense mechanisms # Function: Type I restriction-modification system methyltransferase subunit # Organism: Caulobacter vibrioides # 5 651 4 609 611 520 45.0 1e-147 MPSPQNLSNFVWGIADQLRGVFKPNQYGTLVLPLTILRRMEAVMDPHRGFFAELAAKGHP DFVLDNLVQSRTGLTFYNLSPFTLDRILQEPDLLRTNLLAYVDGFSQNVADLFTYYEFDK TVAKLDEHDRLFLVLQQFASIDLSPDAVSNAEMGTLFEDLIRRFAAASNETAGEHFTPRD AVKLLVDLLTANDDDVLTGYPVRTVYDPTAGTGGMLSLLDERLRRMNPNAEVRLFGQELN DQSYAICKSELLGKGQDADGIARGDTLKNDAHLTERFDYVLSNPPYGGDWKASRTAVEKE IAVGGATNRFPGGTPAISDGQMLFLQLVASKLRPVSEGGGRAGIVLNGSPLFTGGAGSGP SEIRRWLLESDLVDVIVALPTDMFYNTGIATYVWVLDNNKPADRRGRVQLIDARTFFTKL RRNVGSKNKELSTADRQRVLDIYRDFDAQSEDNAEFSKVLTAQDFGYREITVERPLQLRF EVGDATIAAAFATKPVDKLPDDGRSALETALASLRGRVWDHQPTFVLELKKALKEHGVTA GAPLVKALAGAIGVHDPEAEVAKNKKGEPEPDTSLRDTELVPFGRDIHEYFEAEVAPHVP GAWIDESKTKIGYEIPFTRLFYKYVPPRPLEEIDAELKQLTAEIIELLQEVER >gi|289556436|gb|ADCD01000095.1| GENE 60 68655 - 69524 406 289 aa, chain + ## HITS:1 COG:CC0621 KEGG:ns NR:ns ## COG: CC0621 COG0732 # Protein_GI_number: 16124874 # Func_class: V Defense mechanisms # Function: Restriction endonuclease S subunits # Organism: Caulobacter vibrioides # 7 285 161 440 450 119 32.0 7e-27 MPRANWDFIKTIEVWAPDFDTQRRIADYLDRETATIDALIEKQRALLTLLIDRRASVRKH LALRGPESRTSMVQAPEEWAGQIPSHWRFVPLLSVARLGSGHTPSKSRPELWTDTTIPWI SLRDVGSMRATTYLYETHTSISELGLASSSARILPAGTVVLSRDATIGRTAIMGRDMATS QHFAAWTCGPQLLPQYLHLVLADAMQDHLESLTDGSTLRTVGMGDIRALRVPLPPVHEQR RIIDESETETAKIDALIAKAERFIELAQERRAALITAAVTGQIEIPSED >gi|289556436|gb|ADCD01000095.1| GENE 61 69530 - 72796 2796 1088 aa, chain + ## HITS:1 COG:CC0623 KEGG:ns NR:ns ## COG: CC0623 COG0610 # Protein_GI_number: 16124876 # Func_class: V Defense mechanisms # Function: Type I site-specific restriction-modification system, R (restriction) subunit and related helicases # Organism: Caulobacter vibrioides # 1 965 1 944 964 800 47.0 0 MAIHNESELETYICEYLEKHGWLYSPNDAGYDRKNAIFPEDVHAWLAENQPEDYGRIVKA DAPASAQQAQRDQITTRLIDVLNKPQDTGVGGTLNVLRKGFKVGTSGTLRMAEPRPATNL NPAAVASYERMRLRVMRQVHFNPATNQSVDLVLFVNGLPVATIELKTDSTQSIGHAKKQY RERNPKATPLFGFGTRAVVHFAVSNREVWMTTKLAGKDTFFLPFNQGDDGHAGNPLNPDG GSSTAYLWERILQRDTWLEILQKFVFLKKEAVEDEYGRSRRKSTLIFPRFHQWEAVTTML AAVREEGAGKSYLIEHSAGSGKTNTIAWTAHRLLSTYGADEQRVFDSVIVVTDRTVLDDQ LQEAVRQIERTSGTVVAVDRKNLGGEATSKSALVKQTLLQGNRIIVVTLQTFPAVLELLK GDSTLAGRTYAVIADEAHSSQAGSAAAKLKRVLTPDEQADLADGGEADTESILAAEVAAT GRPQNISFFAFTATPKDKTLQMFGRPSGEYDEKGQEIPASFHRYTMQQAIEEEFILDVLK NFTNYDTAFKLALAGQQGEFRPEGDRAAVGKPTTEVDQTEASKKLMRWVKLHPTNIAQKV KIIVEHFRANVAGLLDGQAKAMVVTDSRAAAVRYKRQMDQYIQDMGYTDVGTLVAFSGEI TDNDFGLEKVTERSMNPSVTGDLAKAFDGDGYQVMIVANKYQTGFDQPKLCALYVDKKLS GVLAVQTLSRLNRAAPGKDTTYVLDFVNSEDDIQAAFEPYYAGAKLETVTDPNLIHDLGT KLDAAGVYDWDEVDAFADVWVVWKPGSGQEGLQAALEPVAYRFRKELAHARMNNDETRVN ELVLVRKDMRSFVSLYDFLSQIYEFGDTEHYKRALFLRHLVQLVGDQPGGEELIDLSDVQ LVSIRQKKASSGDIGLTGGAALKGTTAVGGGQVREKQRGPLEEVIEKINEIFAGEGVDAS PSQQEAWVSALVAPLMEDEKLLGQAGANSLEQFLASPNLERSAMGAVYANEDAFAKMTDI VGRGGDPSKMIVAAIGEYLYWKVRSEGTGPVDVAHGRSAVFADKTAPSQGTSVDERASAT PSRVRKGN >gi|289556436|gb|ADCD01000095.1| GENE 62 72798 - 73724 548 308 aa, chain + ## HITS:1 COG:no KEGG:Bsel_0763 NR:ns ## KEGG: Bsel_0763 # Name: not_defined # Def: methionine sulfoxide reductase A # Organism: B.selenitireducens # Pathway: not_defined # 5 297 6 295 296 231 40.0 2e-59 MAHPKTLQVFLMDGAPTGRLKCTLDNWTGLVYVVPRTSLNADGHPEAFEGTGVYLLLGQD ADSGDDVVYVGQAVGRANGNGMVGRIREHVRKEAHDFWNRAILLSTLGDTFGPTEVTYLE HYFHQAATTAGRFTVDNAVAPSQGNVTQEKRAELEEYADKAKLLISALGHRVFESADGSH AAAAAGRATQAPEAVPERTLFTMTVNGVSAQGHPTPDGFVVLRGSGLMEGLRPSAPAGVR ASRERFAGHIGADGVLIEDVSFTSSSAAAGFVAGGSMSGPSSWRAPDGRTLGEVEAASAA PEPMEDDA >gi|289556436|gb|ADCD01000095.1| GENE 63 73835 - 75265 897 476 aa, chain + ## HITS:1 COG:PM0594 KEGG:ns NR:ns ## COG: PM0594 COG1479 # Protein_GI_number: 15602459 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Pasteurella multocida # 12 421 20 398 433 176 31.0 1e-43 MTVGDALREPRLRIPEYQRPYTWSTKNAVQLIDDIRRFRSAASYRIGTMIVHAEDGWLDI VDGQQRYMTFALIALALQEVLGDTAERAEHQRAALDSAAAIELPPSRRDVSERHIVENHR LILQTFRSWDSAEVEDFADYFLDRCTLVRLIVSDLDAAFQMFDSQNTRGRALLPTDLLKA YHLRAYRETTTDRGAIMAAVKDWESTPPDEINHLFSRLLYPILRWSAGESLPSDGFTASR IGAFKGISAGTTGLGRLPWAQGLLMAKAHVDEYNGRNAALIAHGALPPLEFPFQLTQPVT DGEMFFRLVHHYTRLARALGVSATDAEQTAGDDARRGRENRRFQTITRLIRATGTGAGYR YTQELYGALLLAYADRFGDHDIERAALVLARHAFALRTRLTRVYPRSIELHALGQHGALD LEDRVNLFRLMRSSLDPAAVTARVAALPGPYVDEASPVERLYSDTPWDTEEAHDAD >gi|289556436|gb|ADCD01000095.1| GENE 64 75255 - 77312 1088 685 aa, chain + ## HITS:1 COG:PM0595 KEGG:ns NR:ns ## COG: PM0595 COG1479 # Protein_GI_number: 15602460 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Pasteurella multocida # 9 679 10 625 633 218 27.0 5e-56 MQTEKHAPEALTIEEVFTAARHYRVPVYQRAYAWTQVEISTLLADVRRARLRSEESDTRG ALSDYYLGSLVVNRATTPEGVPIDEVVDGQQRLTTLTVLAAVAERVIRAGVLDPRALAVL DYEGRPEAGEDLATLRRRGAPAGTSFQVDAIGAAVETIAAACRRAMDRQTPADDQEVTFD GDDLAYLWKHVRLLRTELPKGTDLNHYFEVMNTRGEQLAKHEILKATLMRPLQDATDRKV FAHVWDACAVLDRHIQLQFSTERPKDGGEAARDAVFGASWSALLPRDFASLRAALAPSQT ATASGARTIIGALLAAGQTAVESGPSSDQRQDDADTGAYGTVVDFPNLLLHVLRVMQEKG EGAEPGLPRWGQDSTGAVRLEDGSLLEQFAQHGQGDAAWSQRFLVTLLRMRLLLDTYVIR TLATTGTQADEENWVLSRAQKLETESGERSPRRRLGVKNTFQDPQVQDAVRNLQAMFQVT DTRRTSKYFLYRILRWLDAQPVDGVDGVAFQHMLEDLARERLRAYAADKTWDAGVNVPNF VFNALDYILWDAGRTSPMEREHLRELLSDVEQQVLRRRADAFRFRYRTSVEHFYPVVPGE EQEALTAEDVNRFGNLCIMGRRENSQRNNLMPVSKVKQYSSDEQSLKFQLMAGILHAEGD WDVPQIKEHGNRMRRVIQEWQGKRP >gi|289556436|gb|ADCD01000095.1| GENE 65 77358 - 77567 287 69 aa, chain + ## HITS:1 COG:no KEGG:Mlut_19580 NR:ns ## KEGG: Mlut_19580 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 69 1 69 69 97 100.0 1e-19 MKIGLRKPSLKKSIKARTTGRAKRAIKRKVIPGYGRKGMGWLRDPKRAAYNAVYRRTTVG LGDVLKMFK >gi|289556436|gb|ADCD01000095.1| GENE 66 77658 - 78458 533 266 aa, chain - ## HITS:1 COG:BH0202 KEGG:ns NR:ns ## COG: BH0202 COG1024 # Protein_GI_number: 15612765 # Func_class: I Lipid transport and metabolism # Function: Enoyl-CoA hydratase/carnithine racemase # Organism: Bacillus halodurans # 16 263 8 249 260 117 33.0 2e-26 MTTAPTPSSSDDAPAVLVETRPGVVRLTLNRPAKGNALGLTMAREVLAAIAAAEADESVH VLTLTGAGRIFCGGGDVQAMAASPAGPERRAMIQELGEAAGEVAVALTGSRLLVLAGVNG TAAGAGLGLMLGGDVVLVREDAQLVTAFSALGMTPDTGVSYWLPRVLGPVRATQLLLGGR RLNGDEAVAWGLATEAVAGDAFAARLAELEDELVAGPAHTYGPTKALARGADVEALRAHV RQEAASIAAASEHPEAVRRVEAFAGR >gi|289556436|gb|ADCD01000095.1| GENE 67 78279 - 78608 59 109 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MHGLVRLGRGDRREHLARHRQSERVALCGPVQRQPHDAGPRLDEDGRGVVGGRRGGCGGH VSSWGWRVRCTGAGREDGRPGMGWVRDPKRAAYNAVYKRTTFSVWDLFR >gi|289556436|gb|ADCD01000095.1| GENE 68 78618 - 79160 394 180 aa, chain - ## HITS:1 COG:no KEGG:KRH_01240 NR:ns ## KEGG: KRH_01240 # Name: not_defined # Def: MarR family transcriptional regulator # Organism: K.rhizophila # Pathway: not_defined # 19 170 11 162 166 135 54.0 1e-30 MGEEHTTLTSTDGEPTSGYWYTRGAREIEPVDVLNLLRRYREAERRMRARTRDSMGMGET HLSALRYLLRADRRGHKVRQRDLASALEITPASASALVDRLVRDGYARRAPHPQDRRSVV VEPTAKTDHEVRATLGAMHRSMLAAVEGLTPAELAGAAAFLRALIRSVEEHDEDEADQPA >gi|289556436|gb|ADCD01000095.1| GENE 69 79293 - 79679 270 128 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289706823|ref|ZP_06503166.1| ## NR: gi|289706823|ref|ZP_06503166.1| hypothetical protein HMPREF0569_1999 [Micrococcus luteus SK58] # 1 128 1 128 128 197 100.0 2e-49 MTATLEAPQAMGRTLSAVPPVLESPAPQPAAFRQRCALLAMSAARAVTVFPEVAEARFAI TGAPSAPALEVDCILRDGEDTAAVIETITVHLVEDLEELLGARFHERRLELVVDRSLPRV GVGVVSAP >gi|289556436|gb|ADCD01000095.1| GENE 70 79689 - 80882 978 397 aa, chain - ## HITS:1 COG:DR0551 KEGG:ns NR:ns ## COG: DR0551 COG1960 # Protein_GI_number: 15805578 # Func_class: I Lipid transport and metabolism # Function: Acyl-CoA dehydrogenases # Organism: Deinococcus radiodurans # 15 396 33 413 414 267 41.0 3e-71 MQKPTYDVVTPLDVDYLDAFGEATDEDRAHWDRARAYGQEVLERIDGHWDRAEYPLDLVA RAGELDLLTDGLEVPGHAVMSPLAAGLVAMEISRADGSMAAAAAVQGGLVLRALVHCAGP EQKERYLEPVARGTLPGGFALTEPLHGSDSVSLETSARPDAAGGWVLNGAKKWIGNGAAG GITIVWARDTEDGQVKGFVVEQSTPGYEAEVITGKGALRAIHQAEITLTDVRVGDDARLP NVATFKDAARVLVATRVNVGWSALGHATAMFEAALAYARQREQFGKPLAAHQMVQERLAQ MLDEVTAMQTRCVAVARLQAAGRLRDEQASLLKYACTRGARRVAQIARDMLGGNGILLEH RVMRHFADVEALHTYEGTESVQALILGRDLTGMSAFA >gi|289556436|gb|ADCD01000095.1| GENE 71 80888 - 82489 1423 533 aa, chain - ## HITS:1 COG:AF0687 KEGG:ns NR:ns ## COG: AF0687 COG0318 # Protein_GI_number: 11498295 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II # Organism: Archaeoglobus fulgidus # 23 525 30 540 549 313 36.0 5e-85 MRGQITHPTDTAAHPSPAPEDTIGRVFARAVARSPQAVALRFEDRDWTYAQLRDGAHRVA RRLQDTGLPAGTRVAAYATNSDAYALLFLACVTAGYVHVPVNFALKGGELAHALEDSGAE LLVADAGMLERVDQVRAEGRASALRHVWTMLPAGHAEPSVLQTARDETLDAAAPEAEVSA TDLAQLLYTSGTTSTPKGAMMSHRALVAEYLSAIIALDFTAEDRPLVAMPLYHSAAMHVF LLPYLSLGATVRLLAAPDIPRMLELVETEHIGSLFLAPTVWVPLANHPDLATRDLSSLRK AQYGASIMPVTVLQRLRQSQPGIGFYNCFGQSELGPLCTVLRPEEHDARPASCGRPVFHV EARVMTADGAPAAPGEPGEIQYRSPQLLSGYWNRPDATADAFTDDGWFRSGDQVTQDAAG YIQVVDRIKDVINTGGVLVAPREVEDAIYELDEVAEVAVIGLPDERWIEAVTAVVVLKEG AELTAETVRAHVKERLAGFKVPKRVDFVAELPRNQSGKLLKRALRAERTQEAR >gi|289556436|gb|ADCD01000095.1| GENE 72 82510 - 83658 986 382 aa, chain - ## HITS:1 COG:MT3660 KEGG:ns NR:ns ## COG: MT3660 COG0183 # Protein_GI_number: 15843168 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA acetyltransferase # Organism: Mycobacterium tuberculosis CDC1551 # 1 382 1 386 386 459 62.0 1e-129 MTEAYIIDAVRTPVGRRGKGLAGVHPLDLAAAPLRELVGRQDIDSAEYDEVILGCIDQLG PQAMDVARNAWLAAGLSEDVPGTTVERQCGSGQQAVHYAAQAVMSGTADLVVAGGVQSMS AIPLSRSNTAARDLGFPDPFTGSESWAARYGSEEISQFRGAEMMARHWNLDRDTLEEFAV RSHERALAAQADGRFDREIIPLAGLTADEGPRTPDAAKIASLDPIVPGGLHTAASASQMS DGAAALLLASEEAVRRHGLTPRARIHHLSARGADPVMMLSAPIPATAYALDRMGLTIDDM DLVEINEAFAAVVLAWLTETGADPVKVNVNGGAIALGHPIGATGARLMTSLLHELERSGG RYGLQTMCEGGGQANVTVIERL >gi|289556436|gb|ADCD01000095.1| GENE 73 83584 - 84171 341 195 aa, chain + ## HITS:1 COG:no KEGG:Mlut_19530 NR:ns ## KEGG: Mlut_19530 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 112 195 1 84 84 140 97.0 3e-32 MHAGEPLPSATHGGADGVDDVGLGHGGSSGRRGRDADHAIAWTSNDQECDGIRRGGVEER RFVNESGSGRAVSATKALGRASPRPGQDPLPRAYREGQRHASVPLRREEPAMATPHTPDP QDARRAREATDETSGVAFDGDTPPAEGAGVGPDNPGMDVEQTGERSAGKIVLAVIIALVV IGVLLFILGRVAGLG >gi|289556436|gb|ADCD01000095.1| GENE 74 84309 - 84701 239 130 aa, chain - ## HITS:1 COG:no KEGG:Mlut_19520 NR:ns ## KEGG: Mlut_19520 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 130 1 129 129 74 93.0 1e-12 MGILSSLTRTLGGGRRSSRPTIGAHVGRSPGFGRQARSQRRRSSGLGGALLGTLGGLALR ELSRRGAGGTTRGRGSGAYRGGFGPSARSTGGLGTGLLGGLLGGALASRGRSGAAGRRAA GGRRTVGGGF >gi|289556436|gb|ADCD01000095.1| GENE 75 84891 - 86345 754 484 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|145629959|ref|ZP_01785741.1| 50S ribosomal protein L21 [Haemophilus influenzae 22.4-21] # 4 452 2 445 456 295 37 8e-79 MEATVEQITAAVTAFNDKYWYVVMALLFVAGVWFTIRTVGVQVRMLPEMLRSVTAKSQTG FENDGVSPFRAFTISAASRVGTGNVAGVAIAIVIGGPGAVFWMWLLAIIGGATAFVESTL AQLYKQKGADGYFGGPAYYIRDGLGAKWLAAVFAVAITVTYGFVFNAVQSNSISESVQAN WGASSTTAWIVGLGLAALTGLVIFGGVRRLSAVTNVLVPVMATFYIFLALIVMVVNITEV PGMIALIVGHAFGLREVAGAAVGMTMVMQGVRRGMFSNEAGMGSAPNAAATAAVSHPAKQ GFVQSLGVYFDTLIVCSATAFVILLSNPAYGRGEAIGMQVTQGALQQAVGAWAGPALTVI IFFLAWSSVLGNTYYGEANIRYLAGRHAGRAISVFRVLVLVCVVGGALGSVALVWNLADT FAALMATINLVAIIPLGGLAVKLLRDYERKLKAGMDPGFHISDLPEARNVALWRDEPKTS PLQD >gi|289556436|gb|ADCD01000095.1| GENE 76 86394 - 87749 1070 451 aa, chain - ## HITS:1 COG:no KEGG:Mlut_19500 NR:ns ## KEGG: Mlut_19500 # Name: not_defined # Def: ribonuclease HI # Organism: M.luteus # Pathway: not_defined # 1 450 1 450 450 642 97.0 0 MGARINHPRTVVDRTLHHDVEAAHPAALVDVGWDFRGPGAKAEEQHRPLRVVRARRPRGT PRDRNGVDLTRTGPVVPRPAPPRTRIRRDGVRVVASPLAMLPGVDHGPALRLDLHPTTGG IVYVARELELRELGDDVRGHVYTGMVGTAHLSAFWSTVTVELPPERPVIVRLRSDRDAEL LALLEVLAPVDTRVVSYRLDESPVGTQRSSYLLPDVDPETVAQTGAARIPLEAIEAAQEE EDALRRSSGVFLSRRRTDRFLRRNLPGVTHSLTFADEADVTDVYVDGSVLRGSRIGGAAA VAGPSMWAVQAVAGATMPLEVELEALVLGHVICAWAGTPGGRVTIHSDSRAALALLNAAR RERLTLGGARGERIRRTLRRLLAAVDLAQAADVQVDTTWVKGHVGVHGNELADDLARAAA RHASVGTPEGDLPERMGQLIQLRVEDDAAAG >gi|289556436|gb|ADCD01000095.1| GENE 77 87962 - 88468 515 168 aa, chain - ## HITS:1 COG:Cgl2053 KEGG:ns NR:ns ## COG: Cgl2053 COG1309 # Protein_GI_number: 19553303 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Corynebacterium glutamicum # 9 166 6 166 191 65 28.0 4e-11 MTPPAPRPRLTAQDVVDAAVGILQDFGMGDLSMRRVAGVLGVQASALYWHVPDKQSLLAR VADRIVAEAEETVRARRVTDLAGRAEAAEAALLRHRDGADVVLSALALGLGGLGLHRLLT EAADTPEDGERALALLLGTVSLRQQRAQAQALGVPTGPDVQRHRTDPL >gi|289556436|gb|ADCD01000095.1| GENE 78 88465 - 89166 252 233 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|225088774|ref|YP_002660041.1| ribosomal protein S16 [gamma proteobacterium NOR5-3] # 1 207 1 209 312 101 33 1e-20 MTPTTTGASLRLRDVAIRYPDGSTPVRGTDLDVAAGEIVALVGASGSGKSTILRGIAGLE DVVAGTVELDGRDVAAVPTHRRGVGMVFQDGQLFPHRTVGRNVAYGLESAGWDRARRRAR VAELLDLVGLTELTDRPVQRLSGGQAQRVALARSLAPAPRVLLLDEPLSALDADLRRRLA EDIRTVLRAAGTTGVVVTHDLAEAAVMADRTVRLGAGGRIAAEEDGPAVASQA >gi|289556436|gb|ADCD01000095.1| GENE 79 89166 - 90896 1351 576 aa, chain - ## HITS:1 COG:PAB0543 KEGG:ns NR:ns ## COG: PAB0543 COG1178 # Protein_GI_number: 14521005 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+ transport system, permease component # Organism: Pyrococcus abyssi # 84 565 55 528 533 199 29.0 1e-50 MSALTEVSAPGTDLPRRRARGRGDGLGPWWLVAAVLPVAFLLVFFAWPVAAMLWRGIGGD ADAFTGAVDLAAFGETLARERTWRILGQTLGMAAAGTVVSVALGLPTAFVLHRRRVPGRA VLRALVLVPFVLPTVVVGVAFRALLAPGGPLGFTGLDQTTTAVVLAMVFFNVSVVVRQVG ALWNALDPRQTEAARTLGASPWRAFRTVTLPQLAPAIAASAALVFLFCASAFGIVQTLGR PGYGTLESEIWVQTSVYLDLRTAAVFSVLQFAVVLAAVVVSGVTAARTQRALRLRETPPA RLTRADAVPMAVMLAVVALVVAPILTLVVRSFHTRHGWGLGNYRLLSTSAGSGFVGGSTP AQALEQSLRVAVDATLVTLVVAVPLALLLTRPFRSRAARAAQRALDGALLLPLGVSAVTV GFGFVVSLRAAFPELAASGVLVPLAQAVVALPLAVRALVPVLAAVDPRLREAARTLGAGP WRVLATVDGPFLARGVGVAAGFAFAVSLGEFGATSFLASPSAPTLPVLIARLLGRPGADN YGMALAAATVLAVLSAGIMLVCERLRPRGPAGAGGL >gi|289556436|gb|ADCD01000095.1| GENE 80 90896 - 91963 918 355 aa, chain - ## HITS:1 COG:DR0262 KEGG:ns NR:ns ## COG: DR0262 COG4143 # Protein_GI_number: 15805294 # Func_class: H Coenzyme transport and metabolism # Function: ABC-type thiamine transport system, periplasmic component # Organism: Deinococcus radiodurans # 49 335 24 320 343 176 36.0 4e-44 MSRTPHRALAALSVAALALTGCSVSGSSGDGASSSASGAGGGEPTTVTIMTHDSFNLPQE LVQKFEQESGYTLKTTAPGDAGSVVNQLMLAKDEPTVDGVYGVEDHSAHRLVREGVVAAY TPKDLPASAQDRMVEDRMTPVDQGQVCFNTDPAWFTAHDVEAPTSIDQLDDPEYAKLTVA TSPVASSPGLALLAATTEKYGDDGWQDWWQGLMENGGKVADSWSDAYNSDFSGGEGKGQF PVVLSYSSSPAFAPETEVIEDSCTPQVEYAGVLEGAKNPEGAQAFVDFLLTEEVQSALPE SMYMYPIDESVQLPEEWAQNAPLVEDAITPDPARIDERREDLLKEWTALFEASRR >gi|289556436|gb|ADCD01000095.1| GENE 81 92280 - 93467 1038 395 aa, chain + ## HITS:1 COG:yhhT KEGG:ns NR:ns ## COG: yhhT COG0628 # Protein_GI_number: 16131346 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Escherichia coli K12 # 4 318 40 349 376 131 28.0 2e-30 MLVIVLTLAGLVLVVQFFQGIASIAAPVFLGLNLVIVAYPLQAWLIRRGLHPVLGATTTV LLVVAVMAVFAGMMVWSGLELVAELPKYTDRFQQIVLDVSHWLNERGVTPDMVSQQLASI DMSTVTGTAVSAITKIATNVYAVFGLLVTVIMGMFFLAMDSMDVERRVRLLSTARHEFGH ALVEFAQGVRRYWVVTTVFGLIVAVLDVIALMLIGVPLALVWGVLSFLTNYVPNVGFIIG LLPPAVLGLAAGGWSDFLWVVVSYSVLNFVLQSVIQPKVAGDAIGVIPTVSFLSLLFWAW VLGPLGAILALPCTLLAKAVLIDADPNARWINALIASDLKGMERRQSSLLERLRPAAWRS DAHGKDEHPTPEDGGDDDGPAADEVTGGAGAAPGR >gi|289556436|gb|ADCD01000095.1| GENE 82 93433 - 94482 762 349 aa, chain - ## HITS:1 COG:no KEGG:Mlut_19440 NR:ns ## KEGG: Mlut_19440 # Name: not_defined # Def: peptidylarginine deiminase-like enzyme # Organism: M.luteus # Pathway: Arginine and proline metabolism [PATH:mlu00330]; Metabolic pathways [PATH:mlu01100] # 1 349 1 349 349 486 97.0 1e-136 MAAADPVPTDARERRDVVVPVPGPEDPPERAWLVLPHRHPVPTLLDETRDAVVGLAETLA AVLPVTVLAHPRDAGAARLVPPEVDLLRAPVGSPLLGRTGPSFIRRPEGLAAVAWRSAAG LTGTGPLDGAAATAVAEAAGLPLLTPLLCAPRGAWVTDGEGTAVVAADPVLDGRINGAWT PGQVAAEFAALLGITRVLWVPPAPRPDTGPWGGPGHLASWVRLQGDGEAAVHWRGDRFHP EHPYAAAALRFLQGADDAAGRPLRVRTVTGAAQPAEYDPAERGPRSLLDTLPLGAAVLRP AFEDAAGEEAAAAACTALHPGLPQLSFPAPPLLRLAGALNDLVLLQPRP >gi|289556436|gb|ADCD01000095.1| GENE 83 94623 - 96500 460 625 aa, chain + ## HITS:1 COG:Cgl0099_1 KEGG:ns NR:ns ## COG: Cgl0099_1 COG0506 # Protein_GI_number: 19551349 # Func_class: E Amino acid transport and metabolism # Function: Proline dehydrogenase # Organism: Corynebacterium glutamicum # 23 402 7 389 389 348 51.0 2e-95 MFSAQDHDDLDRVLGATGGIPDPADLHALADDAVAQVRRWLAESRDHEADFAARQLAGAL KEPGGLDFIVRFVDHVVRPEDPAIAARALRELAGRAPGFLPPALRAVLGVGGRAAPLVPR IAVPTARRVLRRMVSHLIVDARDRQLGKAIAALRDEHTRLNINLLGEAILGQGEADRRLE GIAALIRRDDVDYVSVKVSAATAPHAPYAFDEAVADITERLTPLFELARDRDTFINLDME EYRDLDLTLHVFTALLEQPGLRDYEAGIVLQAYLPDALAAMVRLQEWAARRVAAGGAPVK VRVVKGANLPMERMQASLTGWPLATVGSKQEADTNYKRVLNYALTPEHLAHVRIGVAGHN LFDVALAHRLIERRGLDPAAVEFEMLLGMATGQAAAVRADVGALLLYTPVVRPEEFDVAI SYLVRRLEEGASPENFMSAVFDLDADADLSPARRSASAPRCATWTRPCPVRTASRTGPAG RTGRPPPPWTASPTPRTRTPRCPATGSGPAGSSRPSRTPRSVRAPSAPTAPPRSTPPAPP SPPPPTPAPAGARSPATSAPTRWTPSDGPCTPAGPACWRWPPPRPARPWTRATPRSPRPW TSRTTTPAWPAAWTRWRALAPCPSA >gi|289556436|gb|ADCD01000095.1| GENE 84 96086 - 98257 1554 723 aa, chain + ## HITS:1 COG:Cgl0099_2 KEGG:ns NR:ns ## COG: Cgl0099_2 COG1012 # Protein_GI_number: 19551349 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Corynebacterium glutamicum # 4 715 92 750 763 457 41.0 1e-128 MDGFANTPDTDPALPGNREWARRILAAVPDSALGEGTVRAHRATTVDAARAAIAATADPG ARWGALTGHERADALDAVGRALHAGRARLLEVAAAETGKTLDQGDPEVSEAVDFAHYYAR LARGLDAVEGARAVPVRLTLVIPPWNFPVAIPVGGVLAALGAGSPVVFKPAPQSERTGAV AWELIVAGLRDSGLFDDGGPLAGHDPADLVRLVTLADEDETEVGAALVTDPAVERLILTG SWDTARLFKGMRPDLHLLAETSGKNAVIVTPSADLDLATKDVVQSAFGHAGQKCSASSLV VLVGSVATSERFHRQLLDAASSLHVAHPADPRAEMGPVIEAPGEKLRRGLTELGPGERWA LRPRHLDETGRLWSPGIRSGVRPGADAHLTEYFGPVLAVMTAETLEEAIGIVNAVDYGLT SGLHSLDREEIDVWLRGVRAGNLYVNRGITGAIVRRQPFGGWKRSVVGPTTKAGGPHYLH GLVDWEDARTWAGGEGRPGAEADGAGASWLETARALDTHAWTTVFGVAADVSALEAERNV LRHVPTPVLVRRHSGPADHLLRIVSAGLRAGAPMTVSLRPTPTAEGPDADGLSAEAVRGR VEELVRSVRTEGAGTAAPVDVVVEDDAAFHDRARRLALVPPAAEGGGDARIRLVADWAGD REAAEAARRALHAALGDTPDVAVYAGPVVSAGEVELLPFLHEQAVSVTAHRFGTPDHLTE GVL >gi|289556436|gb|ADCD01000095.1| GENE 85 98277 - 98858 478 193 aa, chain + ## HITS:1 COG:no KEGG:Mlut_19420 NR:ns ## KEGG: Mlut_19420 # Name: not_defined # Def: predicted thioesterase # Organism: M.luteus # Pathway: not_defined # 1 193 1 193 193 335 95.0 5e-91 MHLIPRTIWVVARARRRPRAGLWEPTTLPMRALPTDVDMALHVNNGQYFGLFDLGRFDAM VRTGLWDEIRRRGWTPVVQAEQIAFRRSVTLGQRFDVETRMIGLDERAVWFEQRVVVDGD VAVRAYICTRLRKKDGRPVENDEVRAIAAAAGHDLAGEPTLPEWLHEWRRSVALPSARTP LPHTWDFDTVQRG >gi|289556436|gb|ADCD01000095.1| GENE 86 98890 - 100884 1645 664 aa, chain + ## HITS:1 COG:PA3602 KEGG:ns NR:ns ## COG: PA3602 COG0069 # Protein_GI_number: 15598798 # Func_class: E Amino acid transport and metabolism # Function: Glutamate synthase domain 2 # Organism: Pseudomonas aeruginosa # 13 530 15 536 536 553 52.0 1e-157 MNNRLLIVATLSLAALVVVLVAAIGGGAWWVLAVLLVALLVLAVWDMTQKRHAILRNYPV LGHMRYLLESIRPEIQQYFIERNFDGKPFDRDTRSIVYARAKGLDSHKAFGTERDTSEIG YEFLLHSTAPVNPPEEPPTVRIGGPDCRRPVDISLMNISSMSFGSLSANAVIAMNKGAGL GGFIHETGEGGLTKYHRGNGADLFWEIGSGYFGCRNEDGTFSPEKFAEKALLPEVKGITI KISQGAKPGLGGMLPKEKISPEIAEAREIPMDKDCLSPASHSAFRTPREMVRFIEQLREL SDGKPIGIKFCVGSRVDVLAMTKAIWEERIAPDFIIVDGSEGGTGAAPLEYSDRVGTPLT EGLMLVHNALVGTGLRHMIKLGAAGKVATGSDIVKRLIQGADFTMSARAMMMATGCIQAQ KCHTNECPVGVATQDPRLMRALDVEDKGNRVFNYHRLTVREAVQIMASMGLTHPSQLNTR MLRRRVDHLSTRSYASIYHWLRTDELLNDPPAGWAMDWEEADADHFGEHARVDYLTERDP QWRSELLIPGRAAAGAPVQGSPISGTGSTLVDARRTESVPLTTSPMPRVSSLGEGESLSP HGGRRRAPQDPAPAATAGETPTDENEGLPAEAGERPERQDGEEVTQRGTTGRVEGEPRGE GRVG Prediction of potential genes in microbial genomes Time: Thu May 26 08:20:52 2011 Seq name: gi|289556431|gb|ADCD01000096.1| Micrococcus luteus SK58 ctg1119142776932, whole genome shotgun sequence Length of sequence - 3716 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 1, operones - 1 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 6/0.000 - CDS 39 - 284 290 ## COG0236 Acyl carrier protein 2 1 Op 2 14/0.000 - CDS 346 - 1398 989 ## COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III 3 1 Op 3 4/0.000 - CDS 1431 - 2354 712 ## COG0331 (acyl-carrier-protein) S-malonyltransferase 4 1 Op 4 . - CDS 2464 - 3666 862 ## COG2508 Regulator of polyketide synthase expression Predicted protein(s) >gi|289556431|gb|ADCD01000096.1| GENE 1 39 - 284 290 81 aa, chain - ## HITS:1 COG:ML1654 KEGG:ns NR:ns ## COG: ML1654 COG0236 # Protein_GI_number: 15827872 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl carrier protein # Organism: Mycobacterium leprae # 19 76 20 77 115 63 60.0 8e-11 MASKEEILAGLAEIVNEETGLDAAEVQPEKSFTDDLDIDSISMMTIVVNAEDKFGVKIPD EEVKNLKTVQDAVDFIDGAQA >gi|289556431|gb|ADCD01000096.1| GENE 2 346 - 1398 989 350 aa, chain - ## HITS:1 COG:MT0557 KEGG:ns NR:ns ## COG: MT0557 COG0332 # Protein_GI_number: 15839929 # Func_class: I Lipid transport and metabolism # Function: 3-oxoacyl-[acyl-carrier-protein] synthase III # Organism: Mycobacterium tuberculosis CDC1551 # 16 350 15 333 335 252 46.0 6e-67 MTVTLKQHERPAASRIVAVGAYRPANLVPNEDLIGPIDSSDEWIRQRTGIVTRQRATAEE TVPVMAVGAAREALERAGLQGSDLDAVIVSTVTFPHATPSAAALVAHEIGATPAPAYDVS AACAGYCYGVAQADALVRSGTARHVLVVGVERLSDVVDPTDRSISFLLGDGAGAVIVSAS DEPGISPSVWGSDGERWSTISMTHSQLELRDAVEHARTTGDVSAITGAEGMLWPTLRQDG PSVFRWAVWSMAKVAREALDAAGVEPEDLAAFIPHQANMRIIDEFAKQLKLPESVVVARD IADAGNTSAASIPLAMHRLLEENPELSGGLALQIGFGAGLVYGAQVVRLP >gi|289556431|gb|ADCD01000096.1| GENE 3 1431 - 2354 712 307 aa, chain - ## HITS:1 COG:MT2303 KEGG:ns NR:ns ## COG: MT2303 COG0331 # Protein_GI_number: 15841736 # Func_class: I Lipid transport and metabolism # Function: (acyl-carrier-protein) S-malonyltransferase # Organism: Mycobacterium tuberculosis CDC1551 # 1 296 1 297 302 227 53.0 2e-59 MLAIVCPGQGSQTPGFLAPWLELDGTRDLLASLSDAAGVDLIRHGTESDEETIKDTAVAQ PLIVAAGLVAAAALEADAAARESTVVAGHSVGEITAAAVTGVLSPAEALSLVRVRATGMA RAAAATPTGMAAVVGGDQDEVLAAIEAAGLTPANVNGAGQIVAAGTAEALGALAESAPAR ARVIPLKVAGAFHTEHMRPAVDDLAAHVADLSPSDPRLPLLSNRDGEAVESGTDVLARIV DQVTRPVRWDLCMATMAARQVTGVLELLPGGTLTGLAKRGLKGTAQLAVKTPEDLDAARA FLAEHSA >gi|289556431|gb|ADCD01000096.1| GENE 4 2464 - 3666 862 400 aa, chain - ## HITS:1 COG:MT2302 KEGG:ns NR:ns ## COG: MT2302 COG2508 # Protein_GI_number: 15841735 # Func_class: T Signal transduction mechanisms; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Regulator of polyketide synthase expression # Organism: Mycobacterium tuberculosis CDC1551 # 2 393 8 413 414 211 39.0 1e-54 MPEPRPAAPRPVSTDGLARLRSHLGALNTAVLQRLDATLPWYRRLTPDERSALGLVAQRA LQGFLSWFERPTSTGHVLQDVFGPAPTDLTRAISLQRALQLIRTMVDVVETRVPELLAER DQAPVREHILHYSREVAFALADVYARAAEMRGAMDSRLESVLLDAVLRGQDPDEIRHRAT ALGWRGDHDVMVMAGLAPGQDKPAFIPDLRRAAARLDCDLLVGVQSERLVLVVGSVRDAR AVGEALAPWFAPGPVIVGPVVGSLVSAHVSARHTLAGLSAAAAHPRAGRPTPAEDLLPER ALLGDPTAREALVDGVFTPLADAGTSLLETVDAYGALGHSLEGTARELFVHANTVRYRLK RVAEVTGWDPLVPRDAYVLQTAITLGRLAGARPTNGAGSD Prediction of potential genes in microbial genomes Time: Thu May 26 08:21:05 2011 Seq name: gi|289556396|gb|ADCD01000097.1| Micrococcus luteus SK58 ctg1119142780327, whole genome shotgun sequence Length of sequence - 37771 bp Number of predicted genes - 34, with homology - 33 Number of transcription units - 20, operones - 7 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 1215 1200 ## COG1274 Phosphoenolpyruvate carboxykinase (GTP) 2 2 Op 1 13/0.000 + CDS 1459 - 1761 188 ## COG0831 Urea amidohydrolase (urease) gamma subunit 3 2 Op 2 17/0.000 + CDS 1782 - 2216 397 ## COG0832 Urea amidohydrolase (urease) beta subunit 4 2 Op 3 10/0.000 + CDS 2239 - 3954 1580 ## COG0804 Urea amidohydrolase (urease) alpha subunit 5 2 Op 4 16/0.000 + CDS 3968 - 4459 409 ## COG2371 Urease accessory protein UreE 6 2 Op 5 17/0.000 + CDS 4521 - 5177 618 ## COG0830 Urease accessory protein UreF 7 2 Op 6 9/0.000 + CDS 5260 - 5871 624 ## COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase 8 2 Op 7 . + CDS 5864 - 6718 556 ## COG0829 Urease accessory protein UreH 9 2 Op 8 1/0.000 + CDS 6757 - 7815 813 ## COG3376 High-affinity nickel permease + Term 7866 - 7916 0.4 10 2 Op 9 . + CDS 7962 - 8804 538 ## COG4413 Urea transporter 11 3 Tu 1 . - CDS 8831 - 9961 1068 ## COG1017 Hemoglobin-like flavoprotein 12 4 Tu 1 . - CDS 10116 - 10574 302 ## COG1959 Predicted transcriptional regulator 13 5 Tu 1 . + CDS 10646 - 12850 1763 ## COG0514 Superfamily II DNA helicase 14 6 Op 1 . - CDS 12861 - 15686 1600 ## COG1109 Phosphomannomutase 15 6 Op 2 . - CDS 15655 - 17019 960 ## Mlut_03560 hypothetical protein 16 7 Tu 1 . + CDS 17216 - 18067 442 ## Mlut_03570 hypothetical protein - TRNA 18144 - 18235 69.4 # Ser GCT 0 0 17 8 Tu 1 . - CDS 18432 - 19379 844 ## Mlut_03590 conserved domain protein, TIGR02271+C111 + Prom 19324 - 19383 2.0 18 9 Tu 1 . + CDS 19627 - 21582 1701 ## Mlut_03600 hypothetical protein 19 10 Op 1 1/0.000 - CDS 21666 - 24443 2440 ## COG2374 Predicted extracellular nuclease 20 10 Op 2 . - CDS 24475 - 26739 1921 ## COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases - TRNA 26882 - 26969 56.3 # Ser TGA 0 0 21 11 Op 1 . + CDS 27106 - 28167 904 ## COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases 22 11 Op 2 . + CDS 28164 - 28613 424 ## Mlut_03650 hypothetical protein - TRNA 28685 - 28761 75.7 # Thr CGT 0 0 23 12 Tu 1 . + CDS 28944 - 29678 548 ## Mlut_03670 predicted phosphatase 24 13 Op 1 . - CDS 29708 - 30904 916 ## COG0470 ATPase involved in DNA replication 25 13 Op 2 . - CDS 30901 - 31146 75 ## Mlut_03690 thymidylate kinase (EC:2.7.4.9) 26 14 Tu 1 . + CDS 31039 - 31938 453 ## Mlut_03700 hypothetical protein 27 15 Tu 1 . - CDS 31964 - 32806 546 ## Mlut_03710 hypothetical protein 28 16 Tu 1 . + CDS 32856 - 33614 806 ## COG0588 Phosphoglycerate mutase 1 29 17 Tu 1 . - CDS 33676 - 34344 644 ## COG0704 Phosphate uptake regulator 30 18 Op 1 40/0.000 + CDS 34571 - 35737 970 ## COG0642 Signal transduction histidine kinase 31 18 Op 2 . + CDS 35734 - 36414 614 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 32 19 Tu 1 . - CDS 36506 - 37057 327 ## Mlut_03760 hypothetical protein - Prom 37278 - 37337 2.8 33 20 Op 1 . + CDS 36945 - 37196 83 ## 34 20 Op 2 . + CDS 37259 - 37741 433 ## COG1329 Transcriptional regulators, similar to M. xanthus CarD Predicted protein(s) >gi|289556396|gb|ADCD01000097.1| GENE 1 1 - 1215 1200 404 aa, chain + ## HITS:1 COG:ML2624 KEGG:ns NR:ns ## COG: ML2624 COG1274 # Protein_GI_number: 15828418 # Func_class: C Energy production and conversion # Function: Phosphoenolpyruvate carboxykinase (GTP) # Organism: Mycobacterium leprae # 2 403 206 607 609 530 62.0 1e-150 VHFPEERSIWSFGSGYGGNALLGKKCYALRIASVMARDEAWLAEHMLILKLTNPEGRSYH ITGAFPSACGKTNLALIDPTIEGWKAETLGDDITWIRAGKDGEFRVINPETGYFGVAPGT GWSTNPNAMRAISKGNSIFTNVALTDDGGVWWEGMTDEVPEHLTDWRGNDWTPESGTPAA HPNSRFCTPIEQTDMLADEYRDPRGVKLDAILFGGRRKTTVPLVTEAFDWEDGILKGATL SSETTAAAAGAVGVVRRDPMAMLPFLGYDAGDYLAHWVRESGKADPEKLPRIYLVNWFRR SRDGGFAWPGFGENSRVLKWIVERLEGKAEAEETPIGLVPAAGSLDLSGIEVSAEDLEDA LKVDAAEWAEENEQIEQWLGRFGESLPQAIRDRFEAQKARFAQA >gi|289556396|gb|ADCD01000097.1| GENE 2 1459 - 1761 188 100 aa, chain + ## HITS:1 COG:Cgl0084 KEGG:ns NR:ns ## COG: Cgl0084 COG0831 # Protein_GI_number: 19551334 # Func_class: E Amino acid transport and metabolism # Function: Urea amidohydrolase (urease) gamma subunit # Organism: Corynebacterium glutamicum # 1 100 1 100 100 150 77.0 5e-37 MHLQPKDLEKLLVVVAADLARRRQQRGLKLNHPEAIAIITYELMEGARDGRSVADLMSWG STILTVDDVQEGVADMISMVQVEATFPDGTKLVTVHDPIR >gi|289556396|gb|ADCD01000097.1| GENE 3 1782 - 2216 397 144 aa, chain + ## HITS:1 COG:Cgl0085 KEGG:ns NR:ns ## COG: Cgl0085 COG0832 # Protein_GI_number: 19551335 # Func_class: E Amino acid transport and metabolism # Function: Urea amidohydrolase (urease) beta subunit # Organism: Corynebacterium glutamicum # 1 135 1 131 162 135 53.0 4e-32 MKPGEYVLADAPVVCNPGREAVELSVTNRGDRPVQVGSHFHFAEANRALDFDRQAALGCR LDIPAGTAVRLEPGDETTVKLIPLGGDRVVYGFRDMVDGPLDPHEAAGFHAAPAAPATPA RHESAAGDAPSPLKERAGFDNETR >gi|289556396|gb|ADCD01000097.1| GENE 4 2239 - 3954 1580 571 aa, chain + ## HITS:1 COG:Cgl0086 KEGG:ns NR:ns ## COG: Cgl0086 COG0804 # Protein_GI_number: 19551336 # Func_class: E Amino acid transport and metabolism # Function: Urea amidohydrolase (urease) alpha subunit # Organism: Corynebacterium glutamicum # 1 571 1 570 570 836 71.0 0 MSFEISREQYASLYGPTTGDAIRLADTELFAVVEEDLTTPGEEAVFGGGKVIRDGMGQNS QLVRDVGVPDLVITNVVVIDWTGIYKADIAVRDAHIVAIGKAGNPHTMDGVDIVIGVATD VISGEGKILTAGGIDTHVHFISPDQIETALSSGLTTMIGGGTGPSESSKATTITPGEWNI HTMLRSFEHWPMNFGLLGKGHGSSISPMAEQIRAGAIGLKVHEDWGATPSSINTALQVAD EYDVQVAIHTDTLNESGFVEDTRAAIDGRVIHTFHTEGAGGGHAPDIIELAQYPNILPAS TNPTLPYTTNTVEEHVDMLMVAHHLNADLPEDVAFADSRIRKETIAAEDVLQDMGIFSMT SSDSQAMGRVGEVLIRTWQVADSMKRQRGPLPEDEGTAGDNHRIKRYVSKYTINPAIAHG IADSVGSVEVGKFADLVLWEPQFFGVKPDLVIKGGQMVYGVVGDPNGSIPTPQPRWYRRS FGAYGQAVHTSAITFMSEASIRAGVPRALGLQKTIRAVHGIRDLTKADMRHNGETPRLEV DPETYEVRVDGEPVTCEPQDVLPMAQRYFLF >gi|289556396|gb|ADCD01000097.1| GENE 5 3968 - 4459 409 163 aa, chain + ## HITS:1 COG:SA2085 KEGG:ns NR:ns ## COG: SA2085 COG2371 # Protein_GI_number: 15927871 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Urease accessory protein UreE # Organism: Staphylococcus aureus N315 # 1 163 1 149 150 125 47.0 2e-29 MIVTEILGNVHDDAGAALVGDRHREQVHLEGSALVKRIQRLRTDHGNEYGLRLPAGSPDL RDGDILTVDDEGERGNAVIVRVLSTDVLVISARSLREMAFVAHSLGNRHLPAQFFDADGP FGRDAMVVQYDHTVEDFLRAHDVPHERQERVMDVPFRHAEHTH >gi|289556396|gb|ADCD01000097.1| GENE 6 4521 - 5177 618 218 aa, chain + ## HITS:1 COG:SA2086 KEGG:ns NR:ns ## COG: SA2086 COG0830 # Protein_GI_number: 15927872 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Urease accessory protein UreF # Organism: Staphylococcus aureus N315 # 1 218 9 229 229 178 39.0 7e-45 MLQLTDSALPTGAFSHSLGLETYMSDGRVEGEEDFAAWLEMFVEQQLTFTDALAVRLVYA AEDFDAVANLDELVTAQALPAQIREAGRTMGRRLLRIGAPAYPGDWVRRYHEGVEAGTLD AHQALVWGVIAREIGVPVEEAVAAHLYASVMSLTQNAVRGIPLGQDAGQRVVRRAQEWVL RAVEVSRDLDPDDLGAIAPGLEIAQMRHERQRARMFMS >gi|289556396|gb|ADCD01000097.1| GENE 7 5260 - 5871 624 203 aa, chain + ## HITS:1 COG:Cgl0089 KEGG:ns NR:ns ## COG: Cgl0089 COG0378 # Protein_GI_number: 19551339 # Func_class: O Posttranslational modification, protein turnover, chaperones; K Transcription # Function: Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase # Organism: Corynebacterium glutamicum # 1 202 1 202 205 325 80.0 4e-89 MDPVIIGIGGPVGAGKTQLVERLTRAMSEEISMAAITNDIYTIEDAKILSRTSVLPEERI VGIETGGCPHTAIREDTSMNEAAIEQLKARFPDLQVIFVESGGDNLSATFSPELVDFSIY IIDVAQGEKIPRKAGQGMIKSDLFIVNKTDLAPYVGADLSVMESDSKVFRKDRPFAFTNL KTDEGLDVVMDWIRNDVLMADLG >gi|289556396|gb|ADCD01000097.1| GENE 8 5864 - 6718 556 284 aa, chain + ## HITS:1 COG:Cgl0090 KEGG:ns NR:ns ## COG: Cgl0090 COG0829 # Protein_GI_number: 19551340 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Urease accessory protein UreH # Organism: Corynebacterium glutamicum # 7 284 8 283 283 218 44.0 1e-56 MAEGLTGELRLRVAVRGGRSVAARQFHQGALRVLRPHYLDRSGQVSYTVINSGGAYFGAD RYGIEVDVEEDASLLLTTQSATKVYRTPQGPARQDMTLRLGPGAVLEYVPDQLIVYRGGS YLQDTRVVMDPSASVLLAEVITPGWSPTAEPFRYDRLGMRTEVTVDPGGDPRRLVVDQLR LHPAEGQGLTGMGMLEGHSHTGQLLVADRRLDADLVAELTEVVDASDTVSGITRAGTGRA HGVDCVSVRSLAASTGRITALHHALADLLRARWRDQSPLALRKY >gi|289556396|gb|ADCD01000097.1| GENE 9 6757 - 7815 813 352 aa, chain + ## HITS:1 COG:MT2923 KEGG:ns NR:ns ## COG: MT2923 COG3376 # Protein_GI_number: 15842397 # Func_class: P Inorganic ion transport and metabolism # Function: High-affinity nickel permease # Organism: Mycobacterium tuberculosis CDC1551 # 24 345 27 360 372 181 38.0 1e-45 MSHAVPTAVTPHRTATPERPLRVRVAAVYAVVVALHVLAAALLLGGYGGASPSPVLLAAL VTAYGAGLKHSYDWDHISAIDNSTRKFVSEGGSPAGVGLAFSLGHSLVVTLAAVLAVAGA GLMQGAFADGSPANRVLGLIGTGVSGGYLLLLGVYNGVSALRLRRASAVRRPGPAEEPTG LVTRLLRAPLRRVRSPRDIFVIGFLFGLGFDTATTIGLLLLAVSVSAAGIPLVTLLALPV AFTAAMTLCDTTNGLGMMRLYSSALQQSERRRRFNLVVTSVSAVSALFIAVLTLGAFVHE LLGLTDPVTTWLAEVDLGHAGLALVGVFALIWLCAALLEHRRGRVRPVGDGA >gi|289556396|gb|ADCD01000097.1| GENE 10 7962 - 8804 538 280 aa, chain + ## HITS:1 COG:BMEI0642 KEGG:ns NR:ns ## COG: BMEI0642 COG4413 # Protein_GI_number: 17986925 # Func_class: E Amino acid transport and metabolism # Function: Urea transporter # Organism: Brucella melitensis # 44 268 85 317 349 72 31.0 9e-13 MHPWAAVTTALGSAVQALCSAVRHPDETEDDLRARAVVLGDEARHGIMGYNGALVGAAAA LVFAPTPLTAVLATVVGAAACVPVHVLVARLFATRPLRSVGLPVSTAPFCLTAGMLTLLT AALAGPSAPLTSSGSPWPGLGLGLLNSFAEVVLADGALPGALILAALFVGSWRVGLYGLF GAVASFAAARLIVGHELTDVSTGLWGYSSVLVAIALGAVVQGLGGWRRRVPLVVVGVALS LAFQHVLVETAIPVFTWPFLLGMWATLLLVAGARRAAGRG >gi|289556396|gb|ADCD01000097.1| GENE 11 8831 - 9961 1068 376 aa, chain - ## HITS:1 COG:Cgl2778_1 KEGG:ns NR:ns ## COG: Cgl2778_1 COG1017 # Protein_GI_number: 19554028 # Func_class: C Energy production and conversion # Function: Hemoglobin-like flavoprotein # Organism: Corynebacterium glutamicum # 3 125 35 158 165 130 54.0 4e-30 MPEITPLFYAHMFEAHPELLDGVFSRANQRNGEQAQALAGSIVKFAVHLLENPGTLPEAV LSRIAHKHTALGIVEEQYPLVYENLFWAIGEVLGDAVTPAVADAWTEVYWLMADALIKIE KGLYAQQANDRMWTDWRVVAKEPTGNAAVTFRFEPADDTPQTRGKAGGYVSVRLKVEDGL RQCRQYSLSEKAGSATERVITVKLDEGGEVSPVLIQNVEVGDVIELSNPYGDITLEDEDS TAPLVLATAGIGITPAAAILDALARQGSDRQVLLFHGDASWEAVALREQVAESLGALPHG DARLFLGVRPEQDPEGVTTVEGVMHFDDVELPRDGHYILCGPLAFMQSTRSKLIDAGVPA RSIRYEIFGPDLWLAA >gi|289556396|gb|ADCD01000097.1| GENE 12 10116 - 10574 302 152 aa, chain - ## HITS:1 COG:BH1057 KEGG:ns NR:ns ## COG: BH1057 COG1959 # Protein_GI_number: 15613620 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Bacillus halodurans # 1 133 1 133 146 76 34.0 1e-14 MKLSAYTDVCLRVLMTLAAAEGERLTSQQIADRIQVPYNHVIKAVAELRRRGTIEVLRGR HGGAMIAAAGLDQRVGELVRSLSSRDEVIDCAGRDSGVACPYAGDCRLRGALHRAREAFL AELDTVRIRDLVSAGPVGGPVLLGLPEIPVAH >gi|289556396|gb|ADCD01000097.1| GENE 13 10646 - 12850 1763 734 aa, chain + ## HITS:1 COG:Cgl0869 KEGG:ns NR:ns ## COG: Cgl0869 COG0514 # Protein_GI_number: 19552119 # Func_class: L Replication, recombination and repair # Function: Superfamily II DNA helicase # Organism: Corynebacterium glutamicum # 27 734 3 683 683 619 51.0 1e-177 MDAMDATSHPDAGPRLPETSAPGGDAALHEEALAVLRRLVDRPDARFKDGQFEAIEALVA HRRRALVVQRTGWGKSAVYFVASLLLRARGAGPTLIVSPLLALMRDQVAAAARAGVRAVS VSSANATEWDEVRARLAADEVDVLLISPERLTNPRFRDEQLPDLVARMGLLVVDEAHCIS DWGHDFRPDYRRIRDLIGLLPAEGPRAVPVLATTATANARVVADVVEQLGVASEQDVFVL RGPLARASLRLGVLRMPSPAARLAWLLDHLEDLPGSGIVYALTVSAAEDTARALREAGHE VVAYTGRTDPERRAEIEEDLKANRVKAVVATSALGMGFDKPDLTFVVHLGAPGSPVAYYQ QVGRAGRGTDHADVLLLPGPEDRRIWEYFATASMPDEEQARAVLGALADHGGALSVAALE PAVRIKRTSLELLLKVLAVDGAVERVGGGWRATGREWTYDAERYARVAEARRAEERLMLD YQTTDRCRMEFLARTLDDPTAAPCGRCDVCAGPWYPTGSDGAARERAEAALRRTGVPIEP RRMWPSGMDRLGVPVKGRIASESQAEEGRALARLTDLGWGTVLRDLLDREDAPVPEEVLR GAVDVLAGWGWRTRPIAVVAMPSRTRPQLVGSFAEGIARIGRLPFLGSLEHARGGPTAGP GGNSAYRLGSVYGRFAVPEAMAQMLRTAPDAGRHGPVLLVDDLVDSRWSLAEAARVLREA GAQGVLPLALAQAG >gi|289556396|gb|ADCD01000097.1| GENE 14 12861 - 15686 1600 941 aa, chain - ## HITS:1 COG:Cgl0724 KEGG:ns NR:ns ## COG: Cgl0724 COG1109 # Protein_GI_number: 19551974 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Corynebacterium glutamicum # 465 939 12 458 458 451 54.0 1e-126 MPRPSAGRPTDTRPDDGPGSARRGRPAPAQHDDGARQGGQHQGQDHQHRPRPPVGLVEHA AQPAEEARAGVVREVVQGGRLGAARGGGRPGPRGGHGVGGEERARHEHEGGHQHRRMRDR REGDARGHGRRRAGQDGQPAHPRGQPARARRRPRAREIGEEDEAGRRRRPGERRVEQAVP HEVVQRHEPAHQQRPLQVDGDELRRAQVAAHDAHERRRGRGRRRETPGARRDRQEADRAQ HPDHGDGQHPAAPRGRLRDGQSQEPAGETAEGGAGDVGAGGRRDRVRGHLLRQQRHGESR DAPVRHALEQAQAEHGLERGREDARERARAGGDHRDHHGASAAPPVPGHGPRHHRQGEAE RAGGDEQGGAVRGDAQVVADQRQQTLRGVELGERGHPGQEQPDQQPAVRRLPGGGRRGSR RRNGRGPRGRGLSGRGHALTVSRLSTTIGRVTTSTPSLDLHDSFKAYDVRGIVGESITAE SVRAVGAAFVDVLGLAGQTVLVGGDMRPSSPAFMTAFAEGATRRGADVVTLGLISTDMLY YAAGVKQAAGVVFTASHNPAEYNGMKMAQAGAVPVSSDTGLFEIRDAAQAYLDAGEIPAA ETVGTVTEEDILPGYAAYLRSLVDLTGVRRLKVVVDAGNGMAGKTTPAVLGDAELAALPL EIEPLYFELDGTFPNHPANPLEQENLRDLQAAVVEHGADIGLAFDGDADRCFVIDEQGAP VSPSAITALVARREIARAKADGEQTPVVIHNLITSRAVPELVAADGGRAVETRVGHSFIK AVMAAESAVFGGEHSAHYYFRDFFNADTGMLAAMHVLAALGGQEQPLSELAEEYEPYVAS GEINSQVEDKDAAVAAVVAQFAPAVGEGVGEGQAVHEDFAGVATTVTRMDGTTVAAQDGT WWFNLRPSNTEPFLRYNGEARTAATMEALRDAVLAIVRAQR >gi|289556396|gb|ADCD01000097.1| GENE 15 15655 - 17019 960 454 aa, chain - ## HITS:1 COG:no KEGG:Mlut_03560 NR:ns ## KEGG: Mlut_03560 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 451 1 450 450 757 94.0 0 MSFPRPSARTVDTPSPRRRRWWGTSVALALVLAGCAAPQGDEGTAAGSSGSTDAAASSPA SADGSTASSSQGRSSDAASSQAAASSGEGSPSAAADPAVPLAARSHEGVPMRSFTAEERP PQFVLFSFDGGRQDARWKTFLDAAADSDAKFTVFQSAINLIETANRENYTAPGNEPGYVG TEFGGDEAEVAQRIENINTAHAAGHEIGTHYAGHLCAPTKYGADQWSTAEWEQEYGSFKD ILSDPGADNPGSTLPALEVTPEDVKGGRLPCLDGEWDQLVPMWKDNGLEYDTSRAAAASG VAWPYQEDGIWEFEMPMTWSPVLAEKDAASPFVMAMDYNFWISGNGGKDIPEDVARLTDF QYRTYRYMYDSAFAGNRAPLVFGNHFNDWGLNAFNPAVEKVMREVCVEEDTYCVTYQQMI AWLELQDPEVLAAWRDQARSATGTDAEALGWSTH >gi|289556396|gb|ADCD01000097.1| GENE 16 17216 - 18067 442 283 aa, chain + ## HITS:1 COG:no KEGG:Mlut_03570 NR:ns ## KEGG: Mlut_03570 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 270 1 270 283 400 93.0 1e-110 MEYLVPVLAVVVIGALAFAAARWMSAGRARQAANQRTPSGRGLDIGPERARLAAGLLDED AHRRVYGHIAQSRVMEAVRDYRAHTGRGLKDAVMDVQSLAVHPQVYSEPVQEPDATSAGV AGPVPADHGEPHRDDTAPADTPGPKRPGQDSSGRGEPDAQTPDRETSDAVAEDDARQDTD HASAAPRPTAPSADELTTLTVPAEWTAAPAEEELPFEVEVMRGTESVRLSSQDLPPWLRD QLSAMVRDGNLESAAVQLSSHSELSVPEAYELLRRMRERRGEG >gi|289556396|gb|ADCD01000097.1| GENE 17 18432 - 19379 844 315 aa, chain - ## HITS:1 COG:no KEGG:Mlut_03590 NR:ns ## KEGG: Mlut_03590 # Name: not_defined # Def: conserved domain protein, TIGR02271+C111 # Organism: M.luteus # Pathway: not_defined # 16 311 1 285 286 364 90.0 3e-99 MSVRQQNTDSEGEFLMDRNALDQLQNSTVFATDGDKIGSVGQVYLDDVTNEPTFVTVKTG LFGARETFVPLQQAQTTADGITVPFEKSFVKDAPNVDADGSLTPEEEQRIYEYYSMEYSA ADYDGDVRRDDVRTDAGAAGVAGTAGVAGVADRRDEAVVDGDRHDVTDRDRRDVADHDRR DVTDADSVVVKDEHLNVGTERRASGRVRLRKQAYTTTETVEVPVTREEVVVERESVDPNS AEARTAGRDGDVEVTTYEETPVVNKTVDAEKVSLGKRQVQDTETVTEEVRHEDVKVDGDA TDRDLDGRNDRKDRI >gi|289556396|gb|ADCD01000097.1| GENE 18 19627 - 21582 1701 651 aa, chain + ## HITS:1 COG:no KEGG:Mlut_03600 NR:ns ## KEGG: Mlut_03600 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 634 1 634 651 1124 98.0 0 MSEPLVADRRLAVVGAGPRGVMLLERILARLEGAAPDAHPRRMRIDVVDPYPPGPGRVWR TDQSELYLMNTPAFFPTACAADNPGLRPSTAAQTFDQWRRVHPEASLGVRRHQYPARAVY GRYLRHLYKDVVAGLRARPEVAEVVEHRAEATALHPRPDGGARLELRDADGAVAALDADA VVLCLGHQPAELSPGQNRMAAAARGRDELHYQGPQIPSDVDWETLEAGADVLVRGMGLNA FDLLAQLTQGRGGVYRRTGDGPGRALRYEPSGDEPRLHLMSRRGIPYLPKAEVDAFVPRG VTLSYLSDAAVDALAARHGALDLAEHLWPLLHRDVVRHYYATLVRAQPEILGGPVEARRF LGELVGQLEEAGRGAPVTSAHAEELLQRYAPGRRFLDILAYGSPFEDAVFASHEDYQRAV ADLMEQACVEAALGEESPFMMAVGALHAGRLRIKAWIAEGRIAEASRIRDVQGWFEPLAE GLASGPPLWRVEQMLAVHRAGLLTWAGPAPVVEAEDHGFTARSPQVGAQDSLEPAVVEGA WLVEAMMPPNRVQAAASPLVRQMLADGVAAAGTWEDEEGVRVPATGFDVTARPYRLRASD GTVHADVFVLGLQLSGVQWGTAIAAEAGADPAGRALFLADADAAAAAVLAG >gi|289556396|gb|ADCD01000097.1| GENE 19 21666 - 24443 2440 925 aa, chain - ## HITS:1 COG:Cgl2538_1 KEGG:ns NR:ns ## COG: Cgl2538_1 COG2374 # Protein_GI_number: 19553788 # Func_class: R General function prediction only # Function: Predicted extracellular nuclease # Organism: Corynebacterium glutamicum # 4 842 1 816 816 509 41.0 1e-144 MTPLPRFAARTAVTTAALALLAPAVALPSQASPAGDSLVINEAYTNGGSANAVYTHKFVE LYNPTDQPISLDGWSLQYRSAAGTAATQGTVALSGTVPAKGHFLISGGSNGTAGAALPEA DLVAGGAFNPAGTKGTIVLARQAGTVMDLPVGSVVTGQVPGVADVLGYGATNTFETAAAG APSANSDPKSLTRTNGVDTDDNSADFTVTDQVTPTNAAATGGEPTPEPEPQPTPAERITI AQLQGTGTATPYAGRQVTTTGVVTAVYSTGGYDGYYIQTAGTGGDTPDATPGASDGVFVY SPDTVGSVTLGDHVQVTGEAAEHYGLTQIKVAAGGVLPVAEPGAVAPTPVEFPLEEADRE ALEGMVLAPQGDWTVTDNYSLNQYGSLGIVPGTTPLDNPTSVALPGAEAQAVAAANAQQL IVLDDGATTNFMRSPGNQNPLPYLDADQPVRVGAGLEFTTGVILDWRFDAWSFQPLGHLT DATAAAVQPVTIEDTRPAEAAPEAVGGNVTVGSFNVLNYFTTLGQDVAGCSAYRDRAGTP VTTNGCLPRGAYTPEAFARQQEKIAAAINGLGTSVVALEEIENSEKFGLDRDHALAHLVE ALNAQAGEQRWAFVASPAERPALADEDVIRSAFIYQPAEVTPVGESVILDDQTNFDNARE PMAQLFRAADGTSEGAAGTEFVAITNHFKSKGGSGATGGNVDSGDGQGAYNADRVGQAEA LVAFAERMKAETGTDRVLLMGDFNAYEKEDPIRVLEAAGYVSQGALTGEYSYAFGGAVGS LDGIYASPSAAAAITGQDIWMINANESVALEYSRHNYVAEDLYSADQWRSSDHNPILVGL QLDVPVTEPTPEPEPEPTPGETCDGVTDPRGVPGKPANSVREWLRCIGATPGHGGDHPGK GHGPEHPGKGHGPEHPGKGRGPARP >gi|289556396|gb|ADCD01000097.1| GENE 20 24475 - 26739 1921 754 aa, chain - ## HITS:1 COG:Cgl0328 KEGG:ns NR:ns ## COG: Cgl0328 COG0737 # Protein_GI_number: 19551578 # Func_class: F Nucleotide transport and metabolism # Function: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases # Organism: Corynebacterium glutamicum # 23 675 21 615 694 158 28.0 3e-38 MPSLFRRRAVTTAACTVLVLAPASAAPALAVETAAADETTISILSFNDFHGALSADYIGT QFADTVEDYRTAFEAEHGAGSTLLTSAGDLIGGSKSVSNVQQDNPTIDVMNALGLASLTA GNHEFDKGLDDLQGRVESRAQFPVLSANLVDPTSKEPVLTSHAVFDVDGVRVAVIGASPN ELYATTTGAGLKGNEVLDEVAAVNAVADELEAQDAADVIVASYHDGAAGAGELAAERAAR AEFDRIVGETSSAVDVIFNAHTHQLYRYDTAAGGAHRPVIQAGASGSHLAAVELTVGADG EVTGLTPRLLARSTQAPAEAAAESPVTAQVYAIEQEAVAVFEDLQGEVVADLSASITTDY QKLIDAGGSWKAGGTRAAETTLGTWVGDAVKHAAEQANPEVDLGVTNPGGLRSELLTDRF TDGGAFPAKPADLVGRLTLGELLDMAPFGNTITYFDIPGSSIKLALEENWRNDVRKFTLG WSEELTWTYDESRPQGDKVTGVWIDGEPLQADRMYTVASQSFLADDTWTTLGDPTKAPDG YTAFATGRQNFVNMGLLDSQAITDYARAQDAAHGAVAPDFGKNGVPVTDAPASVEAGQAV GLTLGDLVVDSDGAPAATAVDVAFRTADGTETALGTVAVPTGSETVTLSGITAPAAAGTG ELVMTVRYADGSTTVVRHALEVTAAPAPTEPEQPAPTHPGKGHGKGHDKGADHPGKGRVK GEDHPGKGRGVQRGAATHPVFSAQAWLTAAGLPR >gi|289556396|gb|ADCD01000097.1| GENE 21 27106 - 28167 904 353 aa, chain + ## HITS:1 COG:Rv3777 KEGG:ns NR:ns ## COG: Rv3777 COG0604 # Protein_GI_number: 15610913 # Func_class: C Energy production and conversion; R General function prediction only # Function: NADPH:quinone reductase and related Zn-dependent oxidoreductases # Organism: Mycobacterium tuberculosis H37Rv # 22 338 14 326 328 244 48.0 2e-64 MDVPAQMRAVRFTGAGDNGVVRVGHEPVPDPGPGEVLVHVAAAGLNRADIAQREGRYPPP RGASEIPGLEVSGTVAALGPEAGMPGEGRFAVGDRVCALLAGGGFAEYVAVPAGQLMAVP DGVGLVEAAALPEVACTVHSTLVGRAGVQAGDRVLVHGATGGIGSFAVQFLAALGARVLG TAGGPEKVALGRRLGAEHMFDHRAAESGAFAPWVKEVTDGHGADVILDVVGGPYLAPNVS ALAPEGRIVTLAVQGGAVPEDFNIMKLVVKRGWLTGATLRSRSVVDKAGIVAAAERAVWP LVAAGRIDASVGACFPLAEAAEAFDWFDSATRTGKVVLVTDPADARRPSGDRA >gi|289556396|gb|ADCD01000097.1| GENE 22 28164 - 28613 424 149 aa, chain + ## HITS:1 COG:no KEGG:Mlut_03650 NR:ns ## KEGG: Mlut_03650 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 149 1 149 149 223 99.0 2e-57 MRGPFARFRQERADDRELGTGLWRRAHDRLGRALDRYWQVLEGQRGTDVLSPEERNGVVH AGNVLTERLPAVRALCVRLHRDHEGDGEHIPAEAADVHRELSRAAHELAATAQALALYRL GQGSAESVGRHAERTLGHLDRAEELGAGL >gi|289556396|gb|ADCD01000097.1| GENE 23 28944 - 29678 548 244 aa, chain + ## HITS:1 COG:no KEGG:Mlut_03670 NR:ns ## KEGG: Mlut_03670 # Name: not_defined # Def: predicted phosphatase # Organism: M.luteus # Pathway: not_defined # 22 244 22 244 244 346 96.0 4e-94 MSLPHAPRTPAPPAAASSAVPLRLAVVDMSGTSIVEHGLQDTAFARTLDQHGVPAGTPEH DDAARRFRALRPTSRTAVFPRVFADRAVAAAATRTFEAAFDALLAEHGVRAVRGAEEALV RLRALGLHVCLCTGYARHTQNMILESLGWMGLADLSLSPDDAGRGVPYPDMILTALLGLD LDDVRSVLVVGDTAEDMTAGRRAGAGLVVGVRTGRDADDVLLAAGADRVVPGLADVPDLV VRTR >gi|289556396|gb|ADCD01000097.1| GENE 24 29708 - 30904 916 398 aa, chain - ## HITS:1 COG:MT3747 KEGG:ns NR:ns ## COG: MT3747 COG0470 # Protein_GI_number: 15843256 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA replication # Organism: Mycobacterium tuberculosis CDC1551 # 10 384 7 396 404 214 42.0 3e-55 MTAPAPVPPVFADLAGQEAAVAQLRRAAAEDRPTHAWMFTGPPGSGRSTAARAFAAALQC EVADPAARGCGECHACRTVLGGTHPDVTVLATEAVSYRIEDVRALVEAGQSTPATGRWRI FLMEDADRMTERATNVLLKAIEEPPARTIWMLCTPSPADVLPTVRSRCRLITLSIPAVEQ VAELLHRRDGLDRETALTTARISQSHVGMARRLARDPDALERRERILSLPLQATAVSDAM ALAATLAEVSKAEAESAAEARDAEELEALRRSLGLEPGEPVPPKLRHHVKRLEEDQTRRR RRAVRDSLDRAMIDVMGLFRDVLRVQLGADGELINEHRRGEIEAYARGAAGDSAEVLARI DAVTTARERIAANVPEQLALEAMMLALLPRRVRTPRRR >gi|289556396|gb|ADCD01000097.1| GENE 25 30901 - 31146 75 81 aa, chain - ## HITS:1 COG:no KEGG:Mlut_03690 NR:ns ## KEGG: Mlut_03690 # Name: not_defined # Def: thymidylate kinase (EC:2.7.4.9) # Organism: M.luteus # Pathway: Pyrimidine metabolism [PATH:mlu00240]; Metabolic pathways [PATH:mlu01100] # 1 81 139 219 219 77 97.0 2e-13 MLIDVDAATAADRRDRRAAGGEGTPDRMERETADRHEALRAAFLARAAAAPERYLVLDGA LPPQELTARALARVTAQAADR >gi|289556396|gb|ADCD01000097.1| GENE 26 31039 - 31938 453 299 aa, chain + ## HITS:1 COG:no KEGG:Mlut_03700 NR:ns ## KEGG: Mlut_03700 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 202 299 1 98 98 149 98.0 2e-34 MPVRRLPLHAVGGALAPRRAAVTPVRGGGRVHVDQHRQIGDEAVRGPLVQGGDPRLAQPA RRALVGHGRVHIPVRDDDGAPGQRGTERADGVGGPGRGEQQRLGAGVHGGVPGVQQQLPQ RLAQVRAAGLAREHHLVARGAQGLGQGARLGGLAGSVRSLDGDEQAAMLGLGAHASSLDA APDGEGTGPGRPPRLTGMSAPMHVALLFDHWLFRVLAIAALVLEVWALVDVVRRRPDDFA RTGGRDRSFWLILTGVAAVVGLLGVLAGGGMGMFGLVAACVACVYLAGPRQDMGPALRR >gi|289556396|gb|ADCD01000097.1| GENE 27 31964 - 32806 546 280 aa, chain - ## HITS:1 COG:no KEGG:Mlut_03710 NR:ns ## KEGG: Mlut_03710 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 280 1 280 280 430 97.0 1e-119 MVEKARRLRARTTPGPGPARGPQGHITRGTTAAQRMRRVDRWLTDVHGPLLRRTPRPLAV DLGFGAEPVTAVEMAQRLRVQNPALELVGLEIDPARVARARERAGGLPGVTWAVGGFELP VPRPPTVVRAFNVLRQYREEDVPAIWSLLCAGLADDGVLVEGTCSEDGRRAAWVDLRRDG PASLTVALRLGSFARPSDVAARLPKVLIHRHVPGEPVHRLLAEADAAWAAHAPLAAYGTR QRWLATVGTLRAAGWPVLGGPHQWRRGELSVRWAAVAPSS >gi|289556396|gb|ADCD01000097.1| GENE 28 32856 - 33614 806 252 aa, chain + ## HITS:1 COG:ML2441 KEGG:ns NR:ns ## COG: ML2441 COG0588 # Protein_GI_number: 15828319 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoglycerate mutase 1 # Organism: Mycobacterium leprae # 5 240 6 240 247 320 66.0 1e-87 MANTTYTLVLLRHGQSEWNEKNLFTGWVDVPLTEKGRAEAARGGELLEAEGLRPDVVHTS LLKRAITTANLALEAADRQWIPVKRSWRLNERHYGALQGKDKAQVKEEFGEEQFMVWRRS FDTPPPALDDDSEFSQVGDERYADLGKDAPRTEALKQVVDRLLPYWEEQVLPDLKAGKTV LIAAHGNSLRALVKHLDGISDEDIAGLNIPTGIPLVYELDQNFKPITANGRYLDPEAAAA GAAAVAAQGSAH >gi|289556396|gb|ADCD01000097.1| GENE 29 33676 - 34344 644 222 aa, chain - ## HITS:1 COG:MT0843 KEGG:ns NR:ns ## COG: MT0843 COG0704 # Protein_GI_number: 15840234 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate uptake regulator # Organism: Mycobacterium tuberculosis CDC1551 # 1 212 1 212 213 121 37.0 1e-27 MRELYRADLERLGRDLTEIARLVHRAMMDAQAALEAADVHGAERVISEDARIDQLQESLD EQAVRILALQAPVATDLRTVVATLRMSSSLERMGDLARHVAQLTRLRYPEHVIPEPVRTV FTAMCDAAVEVAEEVVLLLETQDLAHGDRIDTLNEDVNALHVSVFRAIAAPDWSATPATT TDVTLASRYLERFTDHGLSVAAKVRYLVTGEWATHRPDATGS >gi|289556396|gb|ADCD01000097.1| GENE 30 34571 - 35737 970 388 aa, chain + ## HITS:1 COG:Cgl0398 KEGG:ns NR:ns ## COG: Cgl0398 COG0642 # Protein_GI_number: 19551648 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Corynebacterium glutamicum # 39 387 35 386 386 230 40.0 3e-60 MLAFRASERSRTVDLTVGEPTLAPGAAEVLSVVGRAYAVVDDVDGVVRANPAAYALGLVR GHSLVQDQLRELTRTVRADGVIVERRMELPRGPLGQSSLVVELRVAPLDEEYILILADDR TDVTRTEAMRHDFVVNVSHELKTPVGAISLLSEAIGDAAEDEEAVRRFAARLGVESRRLT ALVQDIIEFSRLQAKDVVQDGGPVDLNAVVADAVDRLRLTAEDRGIALRVGGRVDAVVHG DQDQLMTAVRNLVDNAVRYSPEGTTVGIGLSSVDGLAQVTVTDQGIGISPEEQERVFERF YRVDAARSRQTGGTGLGLSIVKHVVINHGGEVTLWSQPGRGSTFTIRLPEWGDGVAVDGA PGAAHVTERRGHRVTASAAHPTRKETSA >gi|289556396|gb|ADCD01000097.1| GENE 31 35734 - 36414 614 226 aa, chain + ## HITS:1 COG:MT0510 KEGG:ns NR:ns ## COG: MT0510 COG0745 # Protein_GI_number: 15839882 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Mycobacterium tuberculosis CDC1551 # 1 226 4 230 230 325 74.0 4e-89 MSRILIVEDEESFSDPLSYLLEKEGFEVTVAADGNEALSVFERDSADLILLDLMLPGMSG TEVCRQVRQRSNVPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELVARVRAVLRRQG EQEEPMSATISAGPVRMDVERHVVSVDGEQVSLPLKEFELLEMLLRNAGRVLTRGQLIDR VWGSDYVGDTKTLDVHVKRLRSKIEPDPSSPRYLVTVRGLGYKFEA >gi|289556396|gb|ADCD01000097.1| GENE 32 36506 - 37057 327 183 aa, chain - ## HITS:1 COG:no KEGG:Mlut_03760 NR:ns ## KEGG: Mlut_03760 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 183 1 183 183 294 96.0 1e-78 MKNASRPARRHLAAGALAAVALLGATGCSAVSPIATAIQYSASDGINGQEQDFLSYRNLA LVGDGESGPARLIGTVENTSGQDQTYTFQAEGGSSATLRVPAGESRKLEDDANTTVLERE GVWVGENLPVTVSGTGGTADLAVPLLSATQEQYRDLLPEGVEPADEDLVGHLHEETHHYG EEH >gi|289556396|gb|ADCD01000097.1| GENE 33 36945 - 37196 83 83 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MAVAIGLTAEQPVAPSRATAASAPAARWRRAGRDAFFTEVSSGAMTCSGAPRQGSCQVRL PHPGTPTGVWRGVLHYHIRRPKM >gi|289556396|gb|ADCD01000097.1| GENE 34 37259 - 37741 433 160 aa, chain + ## HITS:1 COG:ML0320 KEGG:ns NR:ns ## COG: ML0320 COG1329 # Protein_GI_number: 15827084 # Func_class: K Transcription # Function: Transcriptional regulators, similar to M. xanthus CarD # Organism: Mycobacterium leprae # 1 158 4 161 165 215 75.0 2e-56 MVFEVGETVVYPHHGAARIEEIKMRTIKGEEKMYLKLKVAQGDLTIEVPAENVDLVGVRD VVDAEGLEHVMEVLRAEHVEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQDRGL SAGEKRMLSKARQVLVSELALAKKVTEEEAEGRLDKVLEG Prediction of potential genes in microbial genomes Time: Thu May 26 08:21:59 2011 Seq name: gi|289556392|gb|ADCD01000098.1| Micrococcus luteus SK58 ctg1119142780278, whole genome shotgun sequence Length of sequence - 3633 bp Number of predicted genes - 5, with homology - 5 Number of transcription units - 2, operones - 2 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 95 - 373 392 ## pYptb0016 hypothetical protein 2 1 Op 2 . + CDS 420 - 710 582 ## SeSA_B0118 killer protein 3 1 Op 3 . + CDS 713 - 1015 603 ## gi|289706882|ref|ZP_06503222.1| conserved hypothetical protein 4 2 Op 1 . + CDS 1813 - 3402 768 ## ESA_pESA2p06555 hypothetical protein 5 2 Op 2 . + CDS 3399 - 3633 308 ## gi|228472491|ref|ZP_04057252.1| TriK protein Predicted protein(s) >gi|289556392|gb|ADCD01000098.1| GENE 1 95 - 373 392 92 aa, chain + ## HITS:1 COG:no KEGG:pYptb0016 NR:ns ## KEGG: pYptb0016 # Name: not_defined # Def: hypothetical protein # Organism: Y.pseudotuberculosis # Pathway: not_defined # 1 92 41 134 140 81 37.0 7e-15 MPLWKENNLFIQAPKVSGGWNLKVDNFSGDNQVYPEAFWYGLLHSEKITVATGRKTDWFA VKNWLRQHGARQTIYYGEKKACEYCIDIYMSR >gi|289556392|gb|ADCD01000098.1| GENE 2 420 - 710 582 96 aa, chain + ## HITS:1 COG:no KEGG:SeSA_B0118 NR:ns ## KEGG: SeSA_B0118 # Name: not_defined # Def: killer protein # Organism: S.enterica_Schwarzengrund # Pathway: not_defined # 2 96 8 104 105 70 44.0 1e-11 MAALLCAITFNCLPAKADEPCEMTLCMWGQVSGSSKEGCEGQIKKFFKKQVKKKGSFLPN HTADAREDMLRDECPASMVPGDFIKKIISKFGKLKG >gi|289556392|gb|ADCD01000098.1| GENE 3 713 - 1015 603 100 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289706882|ref|ZP_06503222.1| ## NR: gi|289706882|ref|ZP_06503222.1| conserved hypothetical protein [Micrococcus luteus SK58] # 1 100 1 100 100 177 100.0 2e-43 MDRKNFIRNPFSELNDSIRIDVLIIRIEKDAAGKSGLHYEVFHQKVMENLSDIVVRLKDE DAVKLKLAAAMRGYCLDEESLAQTRECYLNKIKQIEDELL >gi|289556392|gb|ADCD01000098.1| GENE 4 1813 - 3402 768 529 aa, chain + ## HITS:1 COG:no KEGG:ESA_pESA2p06555 NR:ns ## KEGG: ESA_pESA2p06555 # Name: not_defined # Def: hypothetical protein # Organism: E.sakazakii # Pathway: not_defined # 9 523 20 534 578 686 63.0 0 MALNVSDALIWTKSYCVVLAIIAGLLLPFMFNLTQQERQDAPVWRKFLNLFTLCCFIFGS ISPLTFYLLGYLLPNLQNKEITSFLLWSMLIVCTLIGFFIHLCLRRFIEPEIQNIKHKAI KKTKLERDVRTDVRKIKDLLPVTIKYDPLQYIDLSKGVFIGLNDAEKPQYIPLEDWQKQH ADIIGTTGAGKGVATAILLYQSIIADEGVFVLDPKDDEWAPHLYREACRAAGKPFALIDL RSKKYQVDLLEGTNSETLEELLNAGFSLAEKGEGADFYRLGDRRASRHVSELYESGMTLR DLFNTEYIRSIQEDVANFHAKMEEISLLNSVNARGGLSLKDTFDNGGCVYIIGSMRNPKI ISAQRMILVRLLQIAEARDRIKSKPRPIAIFLDELKYHLSRPALEGLGAARDKGVHIIMA HQSLGDLEDCPADLKPKAVIGAVVENTKFKLVYRVQDPATAKWVAEMSGSILVDDESRKV KTNAVLVESVEGDRMIKQSERFYVDTNMLLNLPDFVSSFLLTNIFPAHQ >gi|289556392|gb|ADCD01000098.1| GENE 5 3399 - 3633 308 78 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228472491|ref|ZP_04057252.1| ## NR: gi|228472491|ref|ZP_04057252.1| TriK protein [Capnocytophaga gingivalis ATCC 33624] # 1 78 530 607 609 139 100.0 7e-32 MISPIKVSKRALVIFEADEKKQTEITPVINFSETPPLVPLDENPVQEVEDDNQKNRDDSD DDFAAFKLTEEDDVFFKV Prediction of potential genes in microbial genomes Time: Thu May 26 08:22:19 2011 Seq name: gi|289556390|gb|ADCD01000099.1| Micrococcus luteus SK58 ctg1119142776915, whole genome shotgun sequence Length of sequence - 1956 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 1, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 1/0.000 - CDS 2 - 266 85 ## COG0550 Topoisomerase IA 2 1 Op 2 . - CDS 371 - 1138 1121 ## COG0550 Topoisomerase IA - Term 1149 - 1177 3.0 3 1 Op 3 . - CDS 1197 - 1943 173 ## pYptb0030 TriL protein Predicted protein(s) >gi|289556390|gb|ADCD01000099.1| GENE 1 2 - 266 85 88 aa, chain - ## HITS:1 COG:VC2043 KEGG:ns NR:ns ## COG: VC2043 COG0550 # Protein_GI_number: 15642045 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Vibrio cholerae # 7 88 311 390 647 72 47.0 2e-13 MNRENGLSAETTLAVTQSLRDNHKAITYNRSDCRYLSTEQFNDAPKTLQAICSVLNNRFS ADVVSSLDSSLKSRAFNDNKVTAHTAII >gi|289556390|gb|ADCD01000099.1| GENE 2 371 - 1138 1121 255 aa, chain - ## HITS:1 COG:STM1298 KEGG:ns NR:ns ## COG: STM1298 COG0550 # Protein_GI_number: 16764649 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Salmonella typhimurium LT2 # 1 222 1 228 649 213 49.0 3e-55 MRLFIAEKKGLGEVIAQALGNGVNRGGYIECGNDVVTWGSGHLLELVPPESHNPDYAKWN VAHLPLQLRPHRYQPIARTANQFKTVVSLMQKATEIIHAGDPDAEGQLLIDEILTYTGNK KPVKRVLINDLNTEKAKRALANLRDNSEFYGLSQSALARSVADQLYGFNMTRGYTLAAQK KGFSGVLSVGRVQTVILGLIVRRYEAFKNHAEAYYYQVSAGVEIEGGNIPARFIVPDDAP VMTKRELPIKTMLLL >gi|289556390|gb|ADCD01000099.1| GENE 3 1197 - 1943 173 248 aa, chain - ## HITS:1 COG:no KEGG:pYptb0030 NR:ns ## KEGG: pYptb0030 # Name: triL # Def: TriL protein # Organism: Y.pseudotuberculosis # Pathway: not_defined # 5 248 4 246 246 276 59.0 5e-73 MNEQLISDYKTRKDRSHEKIRLFLEFLKEETYTDRKNIMRLFSFKDTKSFYSLTNKMVNM GLIQKYVFTSLLGELPLWGITREGLSMVIRPEDETVPPWFEPSKIKGWGLEHHLFNQNVR LILEEKSATEWINGDRRTFLTRFPKVKHRPDGLIKLKNGTVVAIETERYLKTPARYTQIM ISHLMARTAQNWFSVIYVLPDEQKKLLLKKYFDAIKVLSVNSSKVTVEQKHRDIFNFYTL AELEAADF Prediction of potential genes in microbial genomes Time: Thu May 26 08:22:30 2011 Seq name: gi|289556371|gb|ADCD01000100.1| Micrococcus luteus SK58 ctg1119142780336, whole genome shotgun sequence Length of sequence - 19956 bp Number of predicted genes - 17, with homology - 17 Number of transcription units - 10, operones - 4 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 1069 366 ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 2 2 Tu 1 . - CDS 1182 - 1598 254 ## Mlut_16100 hypothetical protein + Prom 1664 - 1723 2.0 3 3 Op 1 7/0.000 + CDS 1891 - 2556 504 ## COG1268 Uncharacterized conserved protein 4 3 Op 2 . + CDS 2553 - 3314 235 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 5 3 Op 3 . + CDS 3314 - 3949 568 ## Mlut_20540 cobalt transport protein 6 4 Tu 1 . - CDS 3988 - 4440 475 ## COG1607 Acyl-CoA hydrolase 7 5 Tu 1 . + CDS 4566 - 5387 649 ## gi|289706894|ref|ZP_06503232.1| hypothetical protein HMPREF0569_1895 8 6 Op 1 . - CDS 5393 - 7924 2120 ## COG0474 Cation transport ATPase 9 6 Op 2 . - CDS 8018 - 8584 537 ## Mlut_20480 protein of unknown function (DUF664) 10 7 Op 1 . + CDS 8890 - 10122 1066 ## COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 11 7 Op 2 . + CDS 10208 - 11119 368 ## COG1619 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF 12 7 Op 3 . + CDS 11109 - 11906 224 ## COG3886 Predicted HKD family nuclease + Term 12149 - 12183 3.2 13 8 Tu 1 . - CDS 11931 - 13184 775 ## COG3328 Transposase and inactivated derivatives 14 9 Tu 1 . + CDS 13292 - 15721 1619 ## COG1061 DNA or RNA helicases of superfamily II + Term 15750 - 15787 1.7 - Term 15800 - 15828 -0.3 15 10 Op 1 . - CDS 15865 - 17421 1441 ## COG4868 Uncharacterized protein conserved in bacteria 16 10 Op 2 . - CDS 17488 - 18540 945 ## COG2860 Predicted membrane protein 17 10 Op 3 . - CDS 18574 - 19506 531 ## COG2860 Predicted membrane protein Predicted protein(s) >gi|289556371|gb|ADCD01000100.1| GENE 1 2 - 1069 366 356 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 8 355 4 340 458 145 28 2e-34 MNEAVPHFDLAIIGSGGGAFAAAIRATNLDKRVVMIERGTVGGTCVNTGCIPSKALLAAA EARHTAQDAGRFPGLTATAGPVDMEALIAGKRALVENVRSDKYVDLVADYGWELRHGNAV FTGTAADPALEVTAQDGTRETITAAHYLVATGSTPWAAPINGLDTVDYLTSTTAMELDEV PESLLVIGGGYVALEQAQLFARLGSKVTMLVRSRLASGEEPEASRALMSVFANEGIRVIR RSTVSSITQDTDGGIAAQADIAGGRETLRASKVLIATGRRPVTDGLNLAGVSVKTGDKGE VVVEDTLVSSNPRVWAAGDVTGHPEYVYVAASHGTLMVDNAFSDAGRAVDYSHLPR >gi|289556371|gb|ADCD01000100.1| GENE 2 1182 - 1598 254 138 aa, chain - ## HITS:1 COG:no KEGG:Mlut_16100 NR:ns ## KEGG: Mlut_16100 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 6 136 1 131 237 192 76.0 3e-48 MNQPSMATLSSGKITLRDARRGTTRDVELEPFEMAVHPLHDRSTGRPLTPLTWFETINLC NELSNAEELQPAYTRAGDGRSVTWNTSADGYRLPTEAEWEYACRAGTTSPAYGPLEDIAW TGLDHLEGPQPVVRSENP >gi|289556371|gb|ADCD01000100.1| GENE 3 1891 - 2556 504 221 aa, chain + ## HITS:1 COG:FN2003 KEGG:ns NR:ns ## COG: FN2003 COG1268 # Protein_GI_number: 19705299 # Func_class: R General function prediction only # Function: Uncharacterized conserved protein # Organism: Fusobacterium nucleatum # 43 217 10 176 182 99 39.0 7e-21 MSTSVSSSHDGHVRPAATTPADRPTDAGRPRRGSAGGSLARIAVMTALMAVLGLVPPIAV AGVPAPIVLQNIAVILAGVILGPWRGAASMALFAGLVALGLPLLSGGRGGLGVFAGPTAG FILGWIPSALIVGLIFWALTSRARPGLGAGRVALGAAVAGLIGGVVMVYFFGVLGFVGIA GMEFGAAVLSMAPFVPGDLIKLVVAVILIVGLWKAYPRAFR >gi|289556371|gb|ADCD01000100.1| GENE 4 2553 - 3314 235 253 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 38 225 160 340 398 95 36 3e-19 MSPDRSVTLSGVRVEADGPEGVVVLLDGVDLTLTAPRVAVIGENGSGKSTLARAIAGLAD VVAGEVTVHGVDAVRDVKALRRTVGFVFANPAAQMVMPTVREDVELTVKSLRDDAGRRLA KDDVATRVAAALEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDG RHRRIVADRLLAADPSAPDGFQLLLVTHDLELARACDEAVWIHGGRVERTGPAEDVVEAY ERFLDHAVAAELR >gi|289556371|gb|ADCD01000100.1| GENE 5 3314 - 3949 568 211 aa, chain + ## HITS:1 COG:no KEGG:Mlut_20540 NR:ns ## KEGG: Mlut_20540 # Name: not_defined # Def: cobalt transport protein # Organism: M.luteus # Pathway: ABC transporters [PATH:mlu02010] # 1 211 1 211 211 294 97.0 2e-78 MLSLYIHGDSPLHHARAGLKTGLFAVWVLALTLLPLSLWTAGAAVVGAVTAYLVGFGLRR GAAMIASDLRALWLFYVVLFAAQWIFADAFAAGLMVARVLGLVLTAQVLTRTTRIADMTG VAEAVLRPVERIPWAGLRLARAGFRADRVGLAMGLVLSSIGHLRALAEQIRHAQAARGVR MAPWAWVLPLLVLSFKHADDVGDALAARGID >gi|289556371|gb|ADCD01000100.1| GENE 6 3988 - 4440 475 150 aa, chain - ## HITS:1 COG:PA0449 KEGG:ns NR:ns ## COG: PA0449 COG1607 # Protein_GI_number: 15595646 # Func_class: I Lipid transport and metabolism # Function: Acyl-CoA hydrolase # Organism: Pseudomonas aeruginosa # 18 150 46 178 179 193 69.0 1e-49 MDSTLFTRSADRAAHDDVNFRTRKWVKPEDLNANNTLFGGSLLRWVDEEAAIYATLQLGN PRCVTKLISEINFLASAKQGDMIEMGLRATEFGRTSLTMRAKVRNIVTGEMILTIDKIVF VSLGEDGKPVPHGFTEITYDRDRLPLDDPL >gi|289556371|gb|ADCD01000100.1| GENE 7 4566 - 5387 649 273 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289706894|ref|ZP_06503232.1| ## NR: gi|289706894|ref|ZP_06503232.1| hypothetical protein HMPREF0569_1895 [Micrococcus luteus SK58] # 1 273 1 273 273 367 100.0 1e-100 MTIRPHPDPAAPDATWRDVPVVGFTVAAGIAVLFCLVWLLRDGLTTDYTWGLLLAPVLMG VAGVAVMVLWERLLARVPRLAATLVAAVALLAFVLVLAWWLVEVNAQTHLFTGSTLWLLA VAPVCAGLAWLAHRLLPAARRPVGEPPAALDDDAWARRLAGVLRLRKDLPDARVAEIVRD ARARGAAAGRPLAEELGSPEAYAAGFRKDRVAAPRRRAWAVTALVVLILATRLPGVVAGE RLSAWDVAYLLVAVVVLVWEWRDYRAAVRRARG >gi|289556371|gb|ADCD01000100.1| GENE 8 5393 - 7924 2120 843 aa, chain - ## HITS:1 COG:Rv0908 KEGG:ns NR:ns ## COG: Rv0908 COG0474 # Protein_GI_number: 15608048 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Mycobacterium tuberculosis H37Rv # 25 832 5 787 797 462 40.0 1e-129 MASPSPASAHPSAPESGTGLGFTGAAGITGLTAAEVAEREAAGLVNVQSRDTSRSLGQIL RVHVFTLFNLAIALCAVVVILMGRWLDLLFSLAAVANVVIGVVQEYSAKRKLDRIALLHQ DDVLVIRDGARVPLPMAQIVRDDVVVLRRGDQVPVDGEVLVSDGLDMDEALLTGENDPVP KTPGDAVLSGSAVVAGAGLVRATAVGSASHAARLSAEARRYSAIHSELRGALEKVARWLT IALVPIIAVIVHGQMTAVGGWTHALSQPREAALEPALIASVAAVTSMIPQGLALMTTIAF AVSALKLAQQEVLIQEQPAVEVLARVDTVCLDKTGTLTEGGVRFDRLTAPASADPSPDAH DDGAPAEVGDGPRAVLAWFGADPDVNPTAAALREPFTAVPAVDPTAQVAFSSARRWSAVT FGPEAGAAAGTWLLGAPEALVDERLLGHDAAEAVRAQVHADADAGRRVLLLARTDEPLIG EALPAGGVPVAVVTFRENVRPDAAETLDYFHAQGVRTVVISGDSPRTVAAVAREVGLEVT GQAYDGRTLPDEPGELADVMAEHDVFGRVSPDQKKAMVQALQSRGHVVAMTGDGVNDALA LKTADLGIAMGNAAPATKAVSRMVLLDGRFDRLPRVLGEGRQVIANMERLAHIYLTKTTY ALLFGVVFSLFAWQFPLLPRQASTVDFIMIGAPTFFLALLPNPRRYVPGFLGRALRFAIP CGAVILLSMVALHSYVRLTAGDVDPARQQAAFMITLTLLGLWVLSVMSRPLSARVVVLIL AMYATLAAVVLVPVSRWYHQMEVPPTDVLVAALVIAAVGCGLIELIHQVHRRHVARVLAA AGA >gi|289556371|gb|ADCD01000100.1| GENE 9 8018 - 8584 537 188 aa, chain - ## HITS:1 COG:no KEGG:Mlut_20480 NR:ns ## KEGG: Mlut_20480 # Name: not_defined # Def: protein of unknown function (DUF664) # Organism: M.luteus # Pathway: not_defined # 1 188 1 188 188 319 98.0 3e-86 MTTVFYDDQGRPEPPFAAGEAATLLGFLDFLRATIEWKTADLDTAALHRRLPGHPSAMTL GGLLKHLAFVEFWWFEAVALGEPTSAPWVGADFDADPDWDWHSAAQDSAADLRTLWQGQV ERSRQIVVDLLAADGDDGAAALARIHRIREGRDPVSLRWILTHMIEEYGRHAGHADLLRE GIDGQTGE >gi|289556371|gb|ADCD01000100.1| GENE 10 8890 - 10122 1066 410 aa, chain + ## HITS:1 COG:BS_yhfL KEGG:ns NR:ns ## COG: BS_yhfL COG0318 # Protein_GI_number: 16078091 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II # Organism: Bacillus subtilis # 1 408 57 508 513 306 41.0 7e-83 MLPKVPAFVAVYEALMRLSAVMVPLNPLFTARELEYFLEDSGARMLWAMPGLPAVDEVAG NVDVEVVTLDLEAVGRECAAEGIAPVTQITPRDPDDDAVLLYTSGTTGRPKGARLTHTNL RSNAMATATGLGRLGPDDVVFAALPMFHVFGLSVVLNGAVFAGSTLSLMPRFVPADFSRL RMPLSGGASLPVETLRAAEKLFGVPVLEGYGLSENAGACFFNPVDVPTRPGTVGRPVDGF EFRIVAMDGTEVPEEDRETSGELRIRGEGIMAGYWGRPEDTEAAFDEDGWFRTGDIARRD EAGYVMIVDRLKDVIIRGGMNVYPREVEEVLYEHPDVVEAAVVGMPDERLGEEIAAFVSL APGSAVTGEQLQAFAAERLARYKQPREVTVLDGLPKNATGKILRRELRQG >gi|289556371|gb|ADCD01000100.1| GENE 11 10208 - 11119 368 303 aa, chain + ## HITS:1 COG:VCA0439 KEGG:ns NR:ns ## COG: VCA0439 COG1619 # Protein_GI_number: 15601202 # Func_class: V Defense mechanisms # Function: Uncharacterized proteins, homologs of microcin C7 resistance protein MccF # Organism: Vibrio cholerae # 14 243 10 225 334 76 27.0 6e-14 MTQPLVHPPKAQPGDRIAVVSPSFAAPGFAPAVHEQAMRRLAEVTGLVPVEYPTTRQLGA SAEDRARDLNAAFADPQIRAVIATVGGEDQITVIGHLDADAVRADPKPFLGHSDNTNLHQ WLWANGVASFYGGSTQVHLGPGPAVDEVHAASLRAALLTGGRLEITEPGESEDHGVDWLD PRALSEFGTREPVPGPHDDGARGVGGASPWRWAGPRRAVTGRTWGGCLEVLLWVGEVRRM LRILGERAVHAVLAARPPTSSFEVPRGAVERARRRRPLGSTHRSSLGTPPRARVGCQNQH REH >gi|289556371|gb|ADCD01000100.1| GENE 12 11109 - 11906 224 265 aa, chain + ## HITS:1 COG:CAC2824_1 KEGG:ns NR:ns ## COG: CAC2824_1 COG3886 # Protein_GI_number: 15896079 # Func_class: L Replication, recombination and repair # Function: Predicted HKD family nuclease # Organism: Clostridium acetobutylicum # 147 258 32 143 210 67 30.0 3e-11 MSTNDEAVAGRLLRLPAGAYEQVETLHVRQQLAAAQNLEPGFEPLSDTALPHQLAVHVGG LLRHALTQAKTPEKQVELVQRVIAALGADYAPDLPVSEPGRPGRLRTLQEIRPAASPVKE RLARPATPLSEVALLTNAVGEPSIGAEIRDELASADRVDLLCAFVKWHGLRTLEKQLASL AERQVPFRVITTTYVGATERAALDRIVGEFGGEVRVNYTTASTRLHAKAWLFHRESGWST AYVGSSNLSKAAMLDGLEVKPHEVV >gi|289556371|gb|ADCD01000100.1| GENE 13 11931 - 13184 775 417 aa, chain - ## HITS:1 COG:MT2587 KEGG:ns NR:ns ## COG: MT2587 COG3328 # Protein_GI_number: 15842041 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Mycobacterium tuberculosis CDC1551 # 1 413 22 434 436 531 65.0 1e-150 MTAPHIVDPAGLLGEALSEASPDMMRHLLQTMINTLLCADADAVVGAEWGKPSRDRTAQR NGYRHRDLDTRVGTVDVAIPKLRSGTYFPEWLLERRKRAESALITVVADCYLAGVSTRRM DKLVKTLGINALSKSQVSRMAADLDEQVEAFRHRPLGEAGPFTFVAADALTMKVREGGRV VNAVVLIATGVNGDGHREVLGLRVATSETGAAWNEFFADLVARGLAGVRLVTSDAHPGLK DAIAANLPGAVWQRCRTHYAANLMGITPKSMWPAVKAMLHSVYDQPDAASVNAQFDRLLD YVSEKLPVVAEHLDAARADILAFTTFPKDVWTQIWSNNPAERLNREIRRRTDAAGIFPNR AAIVRLVGAVLAEQTDEWAEGRRYLGLEVLARCRLTTVSNTGSEVNPDTAPALEFSA >gi|289556371|gb|ADCD01000100.1| GENE 14 13292 - 15721 1619 809 aa, chain + ## HITS:1 COG:CAC2824_2 KEGG:ns NR:ns ## COG: CAC2824_2 COG1061 # Protein_GI_number: 15896079 # Func_class: K Transcription; L Replication, recombination and repair # Function: DNA or RNA helicases of superfamily II # Organism: Clostridium acetobutylicum # 75 424 3 345 616 260 41.0 9e-69 MRDSTGLEWNVRLSSIATPSLVRKFQATFDTYWADPAFEPYDPERDAERLDRELRQGSFT DRGDRIDLSGLDVHPYPHQARMLDDLNAERARGHHRNLLVAATGTGKTVIAGLDYRDMAL RAGSPPTLLFVAHREEILRQARKTYRAILNDGTFGELFVGGEHPSQWKHVFASVQSLARL GVATLSPDLFDVVVIDEFHHASASSYEALLRHLRPREVLGLTATPERADGVNVKDLFEGR IASEMRLWDALEADILVPFHYFAVNDDVDLRGIEWRNGQYDVGALGRIYTGDEARARKIL AALSDKVSDLDAMKALGFCATVDHAHFMAEVFNRAKVPAAVVVGDTGSEERAAAFRDLRA GTLKVLFGVDVFNEGLDIPEVNTVLFLRPTQSATIFLQQLGRGLRRSPTKSVLTALDFVG HQRKEFRFDLKLRALTGSGRRQLIDDVEAGFPYLPPGSQIVLDRVAEENILANLKNQVGL KLSDLVRDVRDHATAARVGLADYALARYLEEAGRGLEDVYRPGKSGRSWSTVKDLAMGNH LGVIMTPDDRGMTLRAITLRHVDDAERADAYRRLLTNNTRYEELTPQDQQYARMLYFTLL HGAGPAPFSDFDEAFDWVRGLPAFVEEVDQLLDVVVSSARTAPEHLRLGKPTALRSHAHY RRTEILAGLDISSWERTQSSHREGVAFSPDYNTDALLVTLKKDARQFSPSTMYRDFAVSR SAFHWESQNVTTARSPTGQRYLSKEHGESHTLMFVRGSGRDAIGEGAAYLCLGTVQFADW SGTERPMQITWALDREMPTSAYQEARAAS >gi|289556371|gb|ADCD01000100.1| GENE 15 15865 - 17421 1441 518 aa, chain - ## HITS:1 COG:Cgl2942 KEGG:ns NR:ns ## COG: Cgl2942 COG4868 # Protein_GI_number: 19554192 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Corynebacterium glutamicum # 26 518 3 495 495 744 75.0 0 MTGTHETARPASTTTEAAASGPLHRVGFDRAKYIELQSQHIQERRRQIGGKLYLEMGGKL FDDLHASRVLPGFTPDNKIAMLDRIKDETEILVCFNAKDLERNKVRADLGITYEDDVLRL VDVFRERGFLVEHVVVTQLEDANHRALAFLEKLERLGLKVARHRVIPGYPHAMSTIVSEQ GFGANEWSETTRDLVVVTAPGPGSGKLATCLSQVYNDRQRGIPAGYAKFETFPIWNLPLE HPVNAAYEAATVDLDDINLIDPFHLAEYGERVTSYNRDVEVFPLLSALLEKVTGTTPYKS PTDMGVNMAGAAIVDDEVCQEAAKQEIIRRYYKAQVNEALEGADDTESERVALVMSKLGL SSEDRPVVGAAQLVAERTGEPGAAVQLADGTLVTGKTSELLGCSAAVLLNALKVLAGIED DVHLLSPASIEPIQTLKTVHLGSKNPRLHTDEVLIALSVSAATDENAKAAVEQLASLEGC DVHTTTILGSVDEGIFRSLGMLVTSEPKFQKKGLYRKR >gi|289556371|gb|ADCD01000100.1| GENE 16 17488 - 18540 945 350 aa, chain - ## HITS:1 COG:DR2368 KEGG:ns NR:ns ## COG: DR2368 COG2860 # Protein_GI_number: 15807358 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Deinococcus radiodurans # 33 174 18 159 215 105 43.0 2e-22 MAGESPDPTEGAAMDVQQFFATLTDVPWLLTTLDLIGIFFFATSGALLAARKQFDLVGSM ALSLLAGLGGGFTRDILLDRGLPASLENPVYLAPPVLVSLLVYVKLIHPNRLNLTITLFD AAGLALFTVSGVLLAHSMGVHPVSTVVIAMVTALGGGVLRDIVANEVPSIFDPRGVYVLP TFLGAVLATVVAMNGALNAFTGFLIAFLIFAVRMIAYRYQWRFFGAEISQDKESLERLRR LATQAQEAAARRVERTLERRLRSPGAPAFPDDDTHGSYGPRQEYEDQVRVDDYDPQTQTI TVVDPASHQQVRLDRGTGVMDVTDLRTGRTRSFDDPEHDWIADDPEDPRN >gi|289556371|gb|ADCD01000100.1| GENE 17 18574 - 19506 531 310 aa, chain - ## HITS:1 COG:Cgl0134 KEGG:ns NR:ns ## COG: Cgl0134 COG2860 # Protein_GI_number: 19551384 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Corynebacterium glutamicum # 51 210 12 171 239 110 39.0 2e-24 MAGCRPTGDDGRVLLPLLPVWLLSAAPKDPAELERDVPEPIDAHGDLADAITAAITAVDL VGVFFFAISGAVLAVRKGYDIVGSLLLALMVGTGGGVVRDLVVGRDVPAAFDNPWYLILP AVASLAVFLRIFDGERGQHAVMAFDAVGLAVYCVVGTRIALLAGLSPVAAAVLGLVTAVG GGVLRDVVAGEPPAVFGGRGWYALPAILGAGTTAALGQAELLGPLTSAAVMVLVLVLRVV SLRREWLAPGAEISGEAQRQRLDPHDEPPVPDIRDRKGRDGPPADPGEDGPPANEGTPGP DEGVPPGTPG Prediction of potential genes in microbial genomes Time: Thu May 26 08:23:06 2011 Seq name: gi|289556341|gb|ADCD01000101.1| Micrococcus luteus SK58 ctg1119142780353, whole genome shotgun sequence Length of sequence - 37028 bp Number of predicted genes - 27, with homology - 27 Number of transcription units - 17, operones - 9 average op.length - 2.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 41 - 2743 2610 ## COG1048 Aconitase A 2 2 Op 1 2/0.000 - CDS 2946 - 4418 1159 ## COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase 3 2 Op 2 . - CDS 4578 - 6452 1316 ## COG0531 Amino acid transporters 4 3 Op 1 1/0.333 + CDS 6665 - 7366 589 ## COG0569 K+ transport systems, NAD-binding component 5 3 Op 2 . + CDS 7363 - 8076 493 ## COG0569 K+ transport systems, NAD-binding component 6 4 Op 1 . - CDS 8028 - 8732 553 ## Mlut_13090 hypothetical protein 7 4 Op 2 . - CDS 8756 - 8926 76 ## Mlut_13100 hypothetical protein 8 5 Tu 1 . - CDS 9070 - 9696 508 ## Mlut_13110 hypothetical protein 9 6 Tu 1 . - CDS 9843 - 10325 278 ## COG0756 dUTPase 10 7 Tu 1 . + CDS 10442 - 10984 371 ## Mlut_13130 hypothetical protein 11 8 Tu 1 . - CDS 11004 - 11303 237 ## Mlut_13140 hypothetical protein 12 9 Tu 1 . + CDS 11595 - 12917 954 ## Mlut_13150 hypothetical protein 13 10 Tu 1 . - CDS 12937 - 13905 721 ## COG1524 Uncharacterized proteins of the AP superfamily 14 11 Op 1 . - CDS 14115 - 14783 555 ## Mlut_13170 hypothetical protein 15 11 Op 2 . - CDS 14841 - 17570 2278 ## COG1042 Acyl-CoA synthetase (NDP forming) 16 12 Tu 1 . + CDS 17619 - 20225 2166 ## COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit 17 13 Op 1 1/0.333 + CDS 20357 - 21397 805 ## COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III 18 13 Op 2 . + CDS 21416 - 24352 2241 ## COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 19 13 Op 3 . + CDS 24391 - 25422 741 ## COG0451 Nucleoside-diphosphate-sugar epimerases + Term 25441 - 25468 -0.8 20 14 Op 1 . - CDS 25543 - 28164 2001 ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit 21 14 Op 2 . - CDS 28176 - 29726 1237 ## COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) 22 15 Op 1 . - CDS 29887 - 30945 610 ## Mlut_13290 hypothetical protein 23 15 Op 2 . - CDS 30982 - 31875 680 ## Mlut_13300 protein of unknown function DUF75 24 16 Op 1 . + CDS 31792 - 32100 171 ## gi|289706932|ref|ZP_06503269.1| conserved hypothetical protein 25 16 Op 2 . + CDS 32173 - 33705 1181 ## COG0260 Leucyl aminopeptidase 26 17 Op 1 30/0.000 + CDS 33821 - 35200 789 ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 27 17 Op 2 . + CDS 35281 - 37027 1449 ## COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes Predicted protein(s) >gi|289556341|gb|ADCD01000101.1| GENE 1 41 - 2743 2610 900 aa, chain - ## HITS:1 COG:XF0290 KEGG:ns NR:ns ## COG: XF0290 COG1048 # Protein_GI_number: 15836895 # Func_class: C Energy production and conversion # Function: Aconitase A # Organism: Xylella fastidiosa 9a5c # 5 896 3 901 908 1100 60.0 0 MTTVDSFGSKGVLDVKGAEYEIFRLNKVEGAQKLPYSLKVLLENLLRTEDGANVTADQIK ALAAWDPNAQPDTEIQFTPARVIMQDFTGVPCVVDLATMREAIQDLGGDPERVNPLSPAE LVIDHSVQIDSFGNDAAIERNMEIEYERNGERYKFLRWGQTAFDDFKVVPPGMGIVHQVN IENLARTVMTREVDGVLRAYPDSCVGTDSHTTMVNGLGVLGWGVGGIEAEAAMLGQPVSM LIPRVVGFKLTGSIPSGATATDVVLTITEMLRQHGVVGKFVEFYGEGVGSVPLANRATIG NMSPEFGSTAAIFPIDEVTLDYLRLTGRSEEQVALVEAYTKEQGMWHDPSSEVAYSEYLE LDLSTVVPSISGPKRPQDRIELTDSKDQFRKDLHNYATQDEAGEGRPSKLVDVAMADGRQ FQLDHGAVSIASITSCTNTSNPSVMMAAGVLARNAVAKGLKSKPWVKTSVAPGSRVVTDY YEKSGLRESLNDLGFNVVGYGCTTCIGNSGPLESEISEAIQENDLSVTAVLSGNRNFEGR INPDVKMNYLASPPLVVAYALAGTMDFDFENEALGQDTEGNDVFLQDIWPDPTEVQKIID ASIDTEMFTSQYATIFDGDERWQSLETPSGSTFEWDEKSTYVRKPPYFEGMTMQPDPVSD ISGARVLLKLGDSVTTDHISPAGSFKSDTPAGRYLLENGVQRKDFNSYGSRRGNHEVMIR GTFANIRIKNQLLDGVEGGFTRDFTQEGAPQAYVYDAAQNYAEQGTPLVVLGGKEYGSGS SRDWAAKGTALLGVKAVITESFERIHRSNLIGMGVLPLQFPEGENADSLGLTGTETFDIS GIIALNEGTTPKTVKVTATGEDGKVTEFDAVVRIDTPGEAEYYRNGGILQYVLRQIASKA >gi|289556341|gb|ADCD01000101.1| GENE 2 2946 - 4418 1159 490 aa, chain - ## HITS:1 COG:Rv2689c KEGG:ns NR:ns ## COG: Rv2689c COG2265 # Protein_GI_number: 15609826 # Func_class: J Translation, ribosomal structure and biogenesis # Function: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase # Organism: Mycobacterium tuberculosis H37Rv # 22 475 16 401 405 177 33.0 3e-44 MAVVDTTTDVTGIGGTIEVEVGAMAHGGHCVARHEGRVVFVRHAVPGEKVRVALTEAEEG ARFWRGDVVEVLRPSEFRRIHQWKLADMLRAHASGRPPVGGAEFGHIVVPHQRRLKAQVF RDTVHRIADLAVEPEVCFAGSEDEPTGQRWRTRNAFAVTPQGHIAMHAYRSATLLPVRNM PLGVPALDALALWDWDFTGAARVDVATPASGSRPLVLVTPTPQTRADEVKLGRLRTRIRQ AANACGVDVSTGLALPGPKRFLPVKVERITGKTWVEETVESERGGTKRFRVTGDGFWQVH QHAPATLVDAVLEDARVEPGQVVADLYGGAGLFSAYLADAVGPEGRVYSVEASRQASKDA RRNLHDQPQASVLNGPTDKVLGSWLKYPERPVADGGLGGAALDTVVLDPPRAGAGRRAIE RILALEPGRIVYVSCDPASFARDLAWLRDGGYEVERARVFDLYPDTHHLESVTVLVPAAQ STPAAAVVEI >gi|289556341|gb|ADCD01000101.1| GENE 3 4578 - 6452 1316 624 aa, chain - ## HITS:1 COG:MT2764 KEGG:ns NR:ns ## COG: MT2764 COG0531 # Protein_GI_number: 15842228 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Mycobacterium tuberculosis CDC1551 # 6 618 32 639 657 319 37.0 1e-86 MNRWRALPVTSSNALSSLAYAPDEVILTLVAAGTSALALGPAVGWAVVAVMLLIVVSFRA AVAAVPHGGIYHMAGTKFGPRAGVVASAALLLDFVFTAAVSVAAFAHFVAALAPGLTVGS RVLVASAALVGVLLAALRGVRLSRWVLPVLVGVFVALTALLVLAGLWQEGRGLLGAAPTA GWTQEGAGVGGTVGTVATALLALRAFSAGSVLLSGVEVPVSSTRLMARPAVPMVRWVLTV MALTLGALTVGVMHLAQRTGVVVGLELENLRDAAGAEVTPDRAPAPVLAQLADTVYGPGS VLSVATIAATALLLLFAAKSAFRSFPALAARVAEDGYLPRQLRVRSDRLVHTWSVLGMGA VALSLVLFFEARTALLVQLYVIGVLLAFTLAQAGMLRLWRRRLVHTPGARARAAVRLRLI ITSVAWVVTALAGVVVLVTRFTQGAWVALLAIVLGSLVMGRIRRHYADVDRELAPDPQDD ARALPSRVHVVVVVTTLDRPALRALAYARASRPSSLEAVVVDAERAATLEVIDAWERAGL PMSLTVIASPYRDTVAPLVRHVREHRRRSPRDLTMVFIPEYVVRPGWRTLLHNRTATRQT RRLQREPGVMVGSVPWQVHEGQGS >gi|289556341|gb|ADCD01000101.1| GENE 4 6665 - 7366 589 233 aa, chain + ## HITS:1 COG:MT2765 KEGG:ns NR:ns ## COG: MT2765 COG0569 # Protein_GI_number: 15842229 # Func_class: P Inorganic ion transport and metabolism # Function: K+ transport systems, NAD-binding component # Organism: Mycobacterium tuberculosis CDC1551 # 5 200 4 198 227 174 50.0 2e-43 MAHYVIVGGGRVGTRLAATLDAAGHGVALVDRDPRTVEGLAPGFSGELVAGVGFDRSALL AAGIDRAQGLAAVTADDNTNIIAARVARETFHVDHVVARIYDTDRARLYQRLGIPTVASI QWTADQVLHRLLPAGTADAEHRDGSGRLLVTELVPHSSWWGRRLTEVESTVGMRIAYLTR LGDGQLPRPGDRLQEGDVLHAVYPVDRRDRVEAALQGEARVPDGTDEDEEGRA >gi|289556341|gb|ADCD01000101.1| GENE 5 7363 - 8076 493 237 aa, chain + ## HITS:1 COG:MT2766 KEGG:ns NR:ns ## COG: MT2766 COG0569 # Protein_GI_number: 15842230 # Func_class: P Inorganic ion transport and metabolism # Function: K+ transport systems, NAD-binding component # Organism: Mycobacterium tuberculosis CDC1551 # 14 217 14 217 220 172 47.0 6e-43 MRAVIAGAGAVGASIARELHAHGHEVVVVEARADAARKADVGGARLVLGDACDLTVLEQC GALEADVLVAATGDDRVNLVCSLLSRSEFGVGRTVARVNNPLNDWLFDESWGVDVAVSTP SIMTALVEEAVETGDLVRLLRLEAGGAALSEFRVPAEHWLEGRRIGTVSWPQEAPLVAVV RDGAPRQASADEVLEVGDELFFLAAGSAEPALRRLLIGEGRVQGRSETAESAGTPSS >gi|289556341|gb|ADCD01000101.1| GENE 6 8028 - 8732 553 234 aa, chain - ## HITS:1 COG:no KEGG:Mlut_13090 NR:ns ## KEGG: Mlut_13090 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 234 1 234 234 307 99.0 2e-82 MTEPHGPATAAPDGAGPLPSRARLDERGRLDALGSVGGWRGIVEASLPTLVYMVGYVATQ QVWPSGVAAVVVALVLGVARLVQRQSPVQVLAGLAVVVLSVVVSLTTGQARDYYLWGFVT NAAYGLAFAVSALVGWPAAGLVLGLVRAEGTRWRAQRRRRRAYAAATWILVAVFALRLAV QVPLYLGDAVTALGVARLVMGLPLYALGLWLAWSVSSPGQDDGVPADSAVSERP >gi|289556341|gb|ADCD01000101.1| GENE 7 8756 - 8926 76 56 aa, chain - ## HITS:1 COG:no KEGG:Mlut_13100 NR:ns ## KEGG: Mlut_13100 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 56 50 105 105 102 100.0 3e-21 MAPAETLQLVWHGRRRVPGVMPGEWLTVRGRVTQMDGVPTLHNPEFDLVDAPGATL >gi|289556341|gb|ADCD01000101.1| GENE 8 9070 - 9696 508 208 aa, chain - ## HITS:1 COG:no KEGG:Mlut_13110 NR:ns ## KEGG: Mlut_13110 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 208 51 258 258 301 96.0 1e-80 MIDLGSLRLRAVQGMKLRLDVEDATKRIVAATVSLGRSALQVQAFSAPRRTGLWDDLRAE LHDSLSTTAHATVQEQSGRFGIEILTRVPAALPDGSPGWNVARFVGVDGPRWFVRGVFHG EAAFQPEAAEALEQVFSDLVVVRGDEPLPPRELLPLRPPPNARPLQRRRPAPDEGRDVLA DTAAGPGDGAAPEATALPERGPEITEIR >gi|289556341|gb|ADCD01000101.1| GENE 9 9843 - 10325 278 160 aa, chain - ## HITS:1 COG:Cgl1859 KEGG:ns NR:ns ## COG: Cgl1859 COG0756 # Protein_GI_number: 19553109 # Func_class: F Nucleotide transport and metabolism # Function: dUTPase # Organism: Corynebacterium glutamicum # 1 148 1 146 149 151 59.0 4e-37 MTDSAELPVPLHALDPGLAPPAYAQRGDAGADLRTAVDVTLAPGERALVPTGVALAIPEG HAGFVHPRSGLAVRHGLSVVNAPGTIDAGYRGEIKVPLINLDPTEPIVLRRGDRIAQLVL QPVVRARFEPVDALPDSERGVGGFGSTGGFTADITPGRTS >gi|289556341|gb|ADCD01000101.1| GENE 10 10442 - 10984 371 180 aa, chain + ## HITS:1 COG:no KEGG:Mlut_13130 NR:ns ## KEGG: Mlut_13130 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 180 1 180 180 306 96.0 2e-82 MRDPQQHPVADASRRAPEGAAAGPDPVLFEERLTPSAGVWAVALMLAALTILVFAPIDLG LGIAAAVVFLAVEVLILVATTPRIVVRERTLQVGRASIERHHVGQVTGYRGEDARAQRGP LLHGLAFVNVRGWIAPVVRIQLTDERDRTPYWLTSTRRPEELVAALGGTMARQEGAAEDR >gi|289556341|gb|ADCD01000101.1| GENE 11 11004 - 11303 237 99 aa, chain - ## HITS:1 COG:no KEGG:Mlut_13140 NR:ns ## KEGG: Mlut_13140 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 99 1 99 99 149 98.0 4e-35 MATDYDAPRKNEEELSQNSIEELKARRTDTQSAVVDEDEAEAAEGFELPGADLSGEELMV RVLPAQSDEFTCASCFLVRHRSQAAREKNGLIYCTDCEG >gi|289556341|gb|ADCD01000101.1| GENE 12 11595 - 12917 954 440 aa, chain + ## HITS:1 COG:no KEGG:Mlut_13150 NR:ns ## KEGG: Mlut_13150 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 440 1 471 471 552 86.0 1e-155 MAELRLTGPTEDGDALRLSGPEGEEHTLALSPYLRRLVIEGAAPEDGRPAEDGPAAWHDM TEMDVPGADDEDLALTPRIDPRPAADDETADGPTPAPLTDQESVKAAATQEAVPLTPREI QQRIRAGASVEQVARESGNAFSRIRTYGHPVLAERDWIARQARAVEVWVGGPDLYSDLVQ DGGPTTLGELAAHRLAELGVDEASLEWDAWREDQAGWTVAARFAVAGARGLPTHEAPPAL WTFRPAGRHLEPENAWARALSEAEAWDLVPRAPAAEPVTDDVDAEDAVTPAGAHSPAADR DADLLEILRVRRGQRVGADLESDDALAHLIAREHQDRSQREAAPAPERLAPVDAEGALTT ADDAPGIDEPEPATETDRAEHTAADVAEPGVEDEGAEPAPRERAARPAMPTVTPRPRARS AARRASVPSWDEIVFGRKGD >gi|289556341|gb|ADCD01000101.1| GENE 13 12937 - 13905 721 322 aa, chain - ## HITS:1 COG:TVN0258 KEGG:ns NR:ns ## COG: TVN0258 COG1524 # Protein_GI_number: 13541089 # Func_class: R General function prediction only # Function: Uncharacterized proteins of the AP superfamily # Organism: Thermoplasma volcanium # 13 317 102 412 423 68 24.0 1e-11 MADGGRVLEVAVPTTTAASLTSLGTGLDVGEHGVAGYDVLDPDRGVVINQLGGWDEATDP VGWQPKPTVFERAAAAGVDAVTVSLPAFERSALTRAGLRGGRFVAGRTLIARTQAAERVL NDTRVPTLVYFYVNELDKAGHRDGVGSDRWLHALEEIDAAVRRLVDRVPAGTVVLVTGDH GMVDVPPSRRVDYAALDEAGELADPALLEGIAHTAGEPRLVQLHFRSDAGPDVRARVRRA WAERCGTHAWVLTRDEAVDAGWFGTVVEDRVRARIGDLLVAVHGDLALYDGRRVPPHAFE MVGQHGAPTRAEREVPLLTWHR >gi|289556341|gb|ADCD01000101.1| GENE 14 14115 - 14783 555 222 aa, chain - ## HITS:1 COG:no KEGG:Mlut_13170 NR:ns ## KEGG: Mlut_13170 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 222 1 222 222 385 99.0 1e-106 MSPFRRSHEPGRPDHRPGTPEAEGRQREARTLDGSGGLDASLVRAGFYPDLVAHAIAVEL EGRTPDAHLVHVDTHFDYEEIHRHITALVLARDTLLAVHLDDHAADPAGQAVLAQVSTEM VPVRALGSVVLTTGHADPARFRPSDPVAEMTLGLMWAGGQRLDLQPAGCADPQCDLDHGY TGTATREDLVIRVAADADGQGAVDGALAFARALRRAHLAATT >gi|289556341|gb|ADCD01000101.1| GENE 15 14841 - 17570 2278 909 aa, chain - ## HITS:1 COG:AF1511_2 KEGG:ns NR:ns ## COG: AF1511_2 COG1042 # Protein_GI_number: 11499106 # Func_class: C Energy production and conversion # Function: Acyl-CoA synthetase (NDP forming) # Organism: Archaeoglobus fulgidus # 204 892 7 687 691 291 29.0 3e-78 MGETEADRGYPSHWEADVVLRDGATAHLRPISPEDAAELQRMHAGQSENSIYLRYFTYKS ELSAKDLDRFTHVDHRDRVAFVITRGGRLLGVGRYDRYGDSDTAEVAFNISDAAQGRGLG SILMEHLAAAARENGIRRFTAEVLPENRKMLSVFQESGFEVTRRFEDGVVAVEFPIDPTA RWRAVVESREHRAESRSVAELVEPASVAVVGASRDPQAVGSLVLRHVLEAGFTGAVHAVN RAAEDVQGLTAHRSLADIGEPVDLVVVAVPADEVEALIPEAAAAGAQGLVVLTSGYADAG AEGLEAQRRLVSLARAHGMRVIGPASTGLVRTDPAIRLNASPSPGLAQRGPVSLFSQSGA VGAMVSAGVKRRGVGISTSISAGNRADVSGNDAMQFFEADPHTAAVGVYLESFGNPRKFS RIARRLSRTKPVVVVRSDVTGRFLPPGHETRTTQAPEGTVDSMLDQTGVLEAHTHEAMLD ILMAVASQPLPTGHRVVLVADSLALDRLGRDAAAEAGLEVTATVGLVGSEQGIAPPADTL VSAVRDAVRHEQADAVVVLARLGLHQADDEPERLAQALADATRDARIPVLGCLTDVVSPR YRGATLGAAGPVDDDAEPGSLQPGLPFYPSPQQALSVLGALADYVHWRCQEVGEPLEPTG LHPHEAEELVEAAAARAEGTELVRLPDEETQTLLGHYGITVLPSARFETADEAVAAAGRL GFPVALKAVDPHLRHRLDLGGVRLNVVDADSLRRNVEQMRRLLAPFGVRELEVQAMAPAG QACMLTALEDPLLGPVVSFGIAGDATDLLGDWVHRVPPLTDRDVARMVRAPRAAVKLRGT GGVPPVDLAALEDLVGRVSVLKDDLPQVARLRFAPVLAAPEGVTVLQAEVHVANAARRTD SARRALRGR >gi|289556341|gb|ADCD01000101.1| GENE 16 17619 - 20225 2166 868 aa, chain + ## HITS:1 COG:SA0006 KEGG:ns NR:ns ## COG: SA0006 COG0188 # Protein_GI_number: 15925711 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit # Organism: Staphylococcus aureus N315 # 21 790 4 743 889 495 38.0 1e-139 MMARSSRSRPAEQDAPRPLPLEQENIVDVDVSEEMEASFLEYAYSVIYSRALPDARDGLK PVQRRILYMMSRMGLRPDRGHVKSARVVGEVMGKLHPHGDAAIYDAMVRLAQPFSLRLPV VDGHGNFGSLDDGPAAPRYTEARMAPAALALTADLDEGTVDFIPNYDNQLQQPAVLPAAY PNLLVNGTTGIAVGMATNMAPHNLREVVAGARHLLADPAADLEAIMAHIPGPDLPSGGRI VGLDGVRDAYATGRGTFRMRAAVAVEQVTARRTGLVVTELPYGVGPEKVIERIKAGVDAK KLSGIADVVDLTDRKNGLRLQIELKSGFNPQAVLAALYRHTPLEETFGINNVALVDGQPQ TLGLLPLLRVYVDHRLDVVRRRTGHRLGKHRDRLHLVEGLLLALVDIDEVIEIIRSSDDT AAARTRLMGVFDLTQVQADHILELRLRQLTKFSRIELEAERDELQAAIAELEAILASDAR LREVVSSELQAVADEHGDDRRTVLLEAETAAAPAAGPAPSGPTPAGAGQAGADLMVPDTA CWALLSTSGRLLRTADRTPIAPQGRRRKHDAFASVVPTTARGEIGALTSAGALHRLQAVD LPVAGEPSAAPAMTAALPAAELVPLAKGETLVALVPLDTVMALGTAHGVVKRVRPEWPLN RQVVDAVALKDGDAVVGAAPAPDEADQLVFLTRTGQLLRYAASAVRPQGPAGGGVAGIRL AAGDTVLAFGVAPAASLTETGADAAAHPRPAVVVTVTDGEADVLGSAPGSVKVTPLGEYP AKGRGTGGVRAHRLLKGESGLELGWIGAAPALAASRAGVARALPIEYGRRDGSGVPVDQR IEAVGAGASPELVSAPPAEDDAVAVSAD >gi|289556341|gb|ADCD01000101.1| GENE 17 20357 - 21397 805 346 aa, chain + ## HITS:1 COG:XF1970 KEGG:ns NR:ns ## COG: XF1970 COG0332 # Protein_GI_number: 15838564 # Func_class: I Lipid transport and metabolism # Function: 3-oxoacyl-[acyl-carrier-protein] synthase III # Organism: Xylella fastidiosa 9a5c # 15 346 3 338 338 235 37.0 1e-61 MVLVTNVSGNASYEYSRAALLAVTEVEAPVEVTSQDLDDQLAEVLTRLRLPGSLLERVAG VRSRRNWDETEDFQEAAARAGVAALEQAGVPRERVGLLVNTSVTRATLEPSVAVRIHHLM GLPTSATNFDITNACLGFVNGLMLASTLVDAGQIDYAVVVAAEDASKVQAATVANLHAET THRGNFMEQFASLTLGSGAAAAVVGRIEDHPDAHRIVRGITRAGTDHHGLCVGDHHGMYT DSTALLKDGLELVMDAWHDVPAEWAWPEADRFITHQVSQMHTDAIAESAHLDPARIPTTF PTLGNVGPASLPITLVREMDALEDGDTVVCLGVGSGLNTAMLEIEW >gi|289556341|gb|ADCD01000101.1| GENE 18 21416 - 24352 2241 978 aa, chain + ## HITS:1 COG:XF2276 KEGG:ns NR:ns ## COG: XF2276 COG0318 # Protein_GI_number: 15838867 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II # Organism: Xylella fastidiosa 9a5c # 426 970 50 561 563 206 34.0 3e-52 MPQIPAAPAALPPADRLPGWDPAWSRLVEIRSAADPEGTVRTLHVADTGPVLAAAGAEIV GTIVAVHGNPTWSWLWRSLLAETVRRARRGMAAWRVVAPDQLDMGFSERLAHAGSPSAAS MGRAGDTYRTLGGRIADLDALLAALGLRDLAATGHPLITLGHDWGGVVSLGWAARHPELV AGVATLNTAVHQPVGAPIPAPLQAALAGPVLPASTVTTDAFLSVTTSLATPALDRETRAA YHLPYDTAARRGGVGGFVADIPADPGHGSHPELQRVGEDLAALGRTDVPALILWGADDPV FLDRYLDDLRDRLPHARVHRYERAGHLLVDDRDITAPLLQWAQLLRGGQLSDPASGLPGP VPHATAVAAADPGLEVDLGEEPGAREPGVVRLWDHLRDWGAPGSDHREYTALVDMAGAQA GRSLVGTARRPVAVTWGELQEMVSAIATGLWAAGMRPGDRVAMLVPPGRDLSAALYAVLR VGAVAVVADQGLGVKGMTRAMKSARPRWIIGRTPGLTLARAQSWPGTRISVTEPGAAQRR LLDVSDSLYAMVDRHRDPAAGDAVDEHGTVLPEPALDADAAVLFTSGSTGPAKGVVYTHE RLGRLVALISRTLGIRPGGSLLAGFAPFALLGPALGAASVSPDMDVTQPATLTAQKLADA AIAGQSSVLFASPAALANVVATADGLDAPRREALDAVRLVLSAGAPVHPQLMRQVSDLMP NARVHTPWGMTEGLLLTDIDGAEVQRLRTADDEGVCVGSALPTVSLAIAPLLEDGSADDV ILDPARGHGVLGEIVVSAPHLKDRYDALWHTDQQSKRDGLWRRDGRVWHRTADVGHFDAE GRVWLEGRLQHVITTPEGPVGPGGPEKTVDALGPVRRSAVVGVGPRGTQAVVVVVEAAVP ATRPARRPGHHRDGRPKQGLAPTALASAVRAALEPLPVAAVLVADEIPTDIRHNSKIDRA RVADWAESVLAGGTAGAL >gi|289556341|gb|ADCD01000101.1| GENE 19 24391 - 25422 741 343 aa, chain + ## HITS:1 COG:XF1825 KEGG:ns NR:ns ## COG: XF1825 COG0451 # Protein_GI_number: 15838423 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Xylella fastidiosa 9a5c # 12 341 2 329 332 166 34.0 8e-41 MPDLIERLESRRVLVTGASGLLGAGVARVLADAGNDVTTLQRRPSGVPGARDVRGSVTDP AAVEEALTGADTVVHVAAKVSVSGPEHEYEAVNVEGTRILLHAAQRHGVRRFVHVSSPSV AHAGDSIVGEGAGAASPEHARGPYARTKAAGERLALAADRDDFRVLVLRPHLMWGPGDRQ LTDRIVQRARAGRMPVLGTGAPLVDTLYTANAVEAVVAAVSAADVHHGEALVVTNGEPRP VGELIRQIALAGGAAEPERRVPAGLARRAGALIERAWERDLFGLRSRGVGSDDGEPPLTE FLAEQLSTAHWFDQRRTREVLAWTPTVSIDEGLHRVAAYYRDR >gi|289556341|gb|ADCD01000101.1| GENE 20 25543 - 28164 2001 873 aa, chain - ## HITS:1 COG:TM0833 KEGG:ns NR:ns ## COG: TM0833 COG0187 # Protein_GI_number: 15643596 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Thermotoga maritima # 178 867 3 635 636 530 44.0 1e-150 MTKGRTPAGVRPFVMPGASGAGGEAVRLVLPQRGLGTQRVLDGAGVVGAELEGTAGVQHG ADVGLRAAAVAAVGTGEGGRLGHGGDGHGVLLGSLGAGGRRRRWGGPVLLLSHGTARMAG NFPARPPRTRVSPPAYAGGRAGRPGTSGAEPDVSGPRSRLDRPPSSTERPAPVPANTEYN ARHLSVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEALAGFGQSIEITLHPDG SVEVEDNGRGIPVDVEPRTGLSGVEVVFTKLHAGGKFGGGSYAASGGLHGVGASVVNALS SRLDVQVLRGGKVHQMSFRRGEPGRFQDGSRPSPDAPFEPSTDASPLDVVGKAKRGQTGT RVRYWADEQIFVKDATFSAEELQARARQTAYLIPGLRITVKDLRRRPGTPGADGPVEEVF QYDGGISEFVEHLTPATPVTDVWRIQGSGTFKERVPVLGEDGRTSMQDVQRTCEVDVALR WDVGYDTVFRSFVNIIATPKGGTHQSGFEAALLKAFRAQVEANARRLKAGSDKVEKDDVL AGMTAVLTVRLAEPQFEGQTKEILGTSAVRRIVSQVVEKQLTARLTSTARAQRQQVHTLL EKVVAEMKSRISARTHKENQRRKNALETSTMPAKLADCRSNDVASSELFIVEGDSALGTA KLARSSDFQALLPIRGKILNVQKASVSDILANAECAALIQVVGGGAGRSFDLDAARYGKV VLMTDADVDGAHIRTLLLTLFFRYMRPMVEAGRVYAAVPPLHRIEAVTRGVKEREVIYTY SEQELHATLARLEREGRSYREPIQRYKGLGEMDADQLAETTMDPRHRMLRRVNIAEVEAA ERVFDLLMGSAVAPRKDFIVSHADELDRERIDA >gi|289556341|gb|ADCD01000101.1| GENE 21 28176 - 29726 1237 516 aa, chain - ## HITS:1 COG:ML1022 KEGG:ns NR:ns ## COG: ML1022 COG0568 # Protein_GI_number: 15827492 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) # Organism: Mycobacterium leprae # 13 516 65 574 574 435 58.0 1e-121 MDCKDPRVAADETERPRVTTSTTSGAQDGKETTASGATTTRTRSTAAKKSTATKSATTKG TTTRTTAAKSAATKTAATPTAKKKATRKPAAAKTTAAAETTATKKAATTRGKKATASAAS AEQAEDDEEFVEARERTEAADAVEEDVVEDETATEDSDDEDADGSDAPERPAMDAEAVTG TKAATGQKVAQSKGAFVMDDSEDDAPVQQVVVAGATADPVKDYLKQIGKVALLNAEQEVD LAMRIEAGLYAEHVVQHEASDDYRERRDIQLIIADGRKAKNHLLEANLRLVVSLAKRYTG RGMLFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAITRAMADQARTIRIPVHM VEVINKLARVQRQMLQDLGREPTPEELAKELDMTPEKVVEVQKYGREPISLHTPLGEDGD SEFGDLIEDSEAVVPADAVSFTLLQEQLHSVLDTLSEREAGVVAMRFGLTDGQPKTLDEI GKVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD >gi|289556341|gb|ADCD01000101.1| GENE 22 29887 - 30945 610 352 aa, chain - ## HITS:1 COG:no KEGG:Mlut_13290 NR:ns ## KEGG: Mlut_13290 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 352 1 352 352 457 96.0 1e-127 MEAPTSLDAPVLPARGPEDLLAYVGHALGRLPEDSLVLLTLRDGRLRAVVRVDLPPEEVD VGAWACAVAEVCRRDAAADATLCLALPGGARATLTRPGWAAALDDALASAGRPLAAAWTC AHGRARPWWGSGIAEEGPLDPRAAPLSLHLMTRGSVWDRAAVPDPVPRRGPAAARPDDAR WRPPEQDAPRARRAWLAQWESVLTGTARGRGAPAPAVLGSPLTRPAWRDGLLLHAAAPSG VATGDPGDEERILTAATGRAPAWDRLDALRAGLRALVPVATPAVAAQALALAGWVGWARG HGSDADAHLTAAAALNPGDPFVSVLRRIVAAGCVAGWATDPATAWRPDGGGP >gi|289556341|gb|ADCD01000101.1| GENE 23 30982 - 31875 680 297 aa, chain - ## HITS:1 COG:no KEGG:Mlut_13300 NR:ns ## KEGG: Mlut_13300 # Name: not_defined # Def: protein of unknown function DUF75 # Organism: M.luteus # Pathway: not_defined # 1 297 22 318 318 524 98.0 1e-147 MLVALTGHMDAGRVARQVRAALHEHLTHRTVVSFDVDSMFDYRARRPRLRFDRDRYRDLR LPALEVQLVEDLLGHPFLLLSGPEPDFRWHAVTEAVLGLAQEWEVDSLTFLDAAPLPVPH TRRLGVTTHGSRADAVEGLSTWSPQADIVAGLLQMLELRAEEADLPTAGYTVHVPHYVAE ASFPQAAVAALEYAGAAMGLMLPSDDLRDASRDIEAELERQVSGSGEIQQMIAGLERNYD QNAEDQERSLLETEQGLPDGDELASAVEAYLAARDAGGGSAPAQEDRPGRPSTDDGD >gi|289556341|gb|ADCD01000101.1| GENE 24 31792 - 32100 171 102 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289706932|ref|ZP_06503269.1| ## NR: gi|289706932|ref|ZP_06503269.1| conserved hypothetical protein [Micrococcus luteus SK58] # 39 102 1 64 64 112 100.0 8e-24 MGQVLVQRGPHLPSDPARVHVSGQGHEHAQAGGHGRPLMTGVQRRGVLHVSFPFRWSVCG RAVPAARMATDADPSLSSGVSQPRHGTLLFRARAPWTGARAL >gi|289556341|gb|ADCD01000101.1| GENE 25 32173 - 33705 1181 510 aa, chain + ## HITS:1 COG:Cgl2156 KEGG:ns NR:ns ## COG: Cgl2156 COG0260 # Protein_GI_number: 19553406 # Func_class: E Amino acid transport and metabolism # Function: Leucyl aminopeptidase # Organism: Corynebacterium glutamicum # 21 506 41 508 513 331 42.0 2e-90 MITLDRPTLTARALEDLTASALVVGVGTGPDGPVLLTDALPAEAAAALEASFELLGVRGA EDEVHRLPGLGGVPVPLLVLAGVGGLDDDGEAADESLRRAAGAAVRSLAGTDAVALALPA DTPARLAAVAEGAVLGAYAFTAQKSERARAEADTSRPVREVEVVTPLAAADADPVLRRAA VVGDAVCAVRDLVNTAPSHLYPATFADAVAEDLADSSVSVDVWDEDRLRAEGFGGILAIG QGSSRPPRLVRIEHAPADAAAHIALVGKGITFDSGGISLKPAASMMTMKSDMAGAATVFA VVRAAAALDVPVKVTGWLALAENMPSGTAIRPSDVITMYGGKTVEVMNTDAEGRVVMADA LVAATDERPDAVLDVATLTGAQLVALGVRHTGVMGDDALRDEVVAAADAAGELAWGMPLP EQLRASLNSRVADISNMGDRFGGMMTAATFLREFVDAGRSEGDAAARTPWAHLDIAGPSF NESAAYGYTPQDATGVMVRTLLGLIEGRAR >gi|289556341|gb|ADCD01000101.1| GENE 26 33821 - 35200 789 459 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 9 458 3 457 458 308 38 3e-83 MADKATAQEFDVLVLGGGSAGYAAALRSVQYGKSVALVEKSKVGGTCLHWGCIPTKAYLH AAEVADETRNAAKFGVNATLESVDMAKVRDYKDGIVAGKHKGLAGLLKMRKVQVIEGEGK LVSKNEVEVDGTRYKAENIVLASGSVAKTMGLPISKKIMTSTEALELDYTPKSAIVLGGG VIGSEFASLWNSFGVDVTIIEGLKTLVPNEDPAIIKVLEREFKKKGIKTNLGTFFDKVEE TDSGVKVTLADGKEFEAEVCLVAVGRGPNTEGLGYEEQGVKMDRGFVLTDERLHTGVGNI YAVGDIVPGLQLAHRGFQQGIFVAEEIAGNKPMVVEDINIPKVTFTEPEIMSVGYTQPKA EEKFGKDNVEVAEYNLAGNGKSSILGTGGIIKMIRQKNGPIVGVHGIGKRIGEQIGEAQL IVNWEAYPEDVAQFVHAHPTQNEALGEAAMALFGHPLHS >gi|289556341|gb|ADCD01000101.1| GENE 27 35281 - 37027 1449 582 aa, chain + ## HITS:1 COG:ML0861 KEGG:ns NR:ns ## COG: ML0861 COG0508 # Protein_GI_number: 15827386 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes # Organism: Mycobacterium leprae # 7 582 1 485 530 399 49.0 1e-111 MRSIGTMSETVNLPALGESVTEGTVTRWLKAVGDEVALDEPLVEVSTDKVDTEIPSPVAG VLEEILVEEDETVEVGAPLATIGDGSGGGSADASEDDAAAEEPAVEEAQQDDAQQEPAGE PAPEERASTDQGSDEAPSAGGEASEVTLPALGESVTEGTVTRWLKSVGDEVEVDEPLLEV STDKVDTEIPSPVAGTLLEIRAEEDDTVEVGAVLALVGSGSAGGGSAPSEGSSGQDEASA EEIEDKATEAEAPEETEEAAEAAGAEKSEKTPEASPSEEASRRESAERDSAQAESAEAPS ATEPGQGYVTPLVRRLAHQNNVDLSTVRGTGVGGRIRKQDVLAAALASQAAAGGSEAPAE QASEAAAPSSAPAAASAPAASSSVDPSVRGEVEKAPRIRQVIAQRMRESLDLSTQLTQVH EVDVTRIVQLRKKAKASFQQQAGVNLTYLPFITKAVAEALKQHPKLNASFSEDNKEITYH ASEDIAIAVDTEKGLLVPVIKDAGSLNLTGLAQKIADVAERTRTNKISPDELSGGTFSIT NIGSVGALFDTPIINQPQVAILGTGAIVKRPMVVTDADGNDS Prediction of potential genes in microbial genomes Time: Thu May 26 08:23:48 2011 Seq name: gi|289556340|gb|ADCD01000102.1| Micrococcus luteus SK58 ctg1119142776941, whole genome shotgun sequence Length of sequence - 1024 bp Number of predicted genes - 2, with homology - 1 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 183 122 ## 2 2 Tu 1 . - CDS 151 - 624 663 ## Ctu_2p00190 hypothetical protein - Prom 828 - 887 2.4 Predicted protein(s) >gi|289556340|gb|ADCD01000102.1| GENE 1 1 - 183 122 60 aa, chain + ## HITS:0 COG:no KEGG:no NR:no SPIRPVETFSSSVSALVKPSANAGAVRPKAAAVTAVLRTVEIRVRARLTILVFITYFLCH >gi|289556340|gb|ADCD01000102.1| GENE 2 151 - 624 663 157 aa, chain - ## HITS:1 COG:no KEGG:Ctu_2p00190 NR:ns ## KEGG: Ctu_2p00190 # Name: not_defined # Def: hypothetical protein # Organism: C.turicensis # Pathway: Bacterial secretion system [PATH:ctu03070] # 1 143 84 226 236 149 56.0 2e-35 MQINKTNFSKYDVTASQLFDPCTNLKVFEKIIIDCYRRGGSLKRALSCYYSGNFDTGQRP EKSFSQTSYVQRIGYKPSSKPYVVPSTKADQMASVQPESASTPTPQSTRQTWPKTVVRGS LPDAASKSSSTRLVYPSQVIRGTVFNSSMAKEVSNEN Prediction of potential genes in microbial genomes Time: Thu May 26 08:24:24 2011 Seq name: gi|289556262|gb|ADCD01000103.1| Micrococcus luteus SK58 ctg1119142780293, whole genome shotgun sequence Length of sequence - 81951 bp Number of predicted genes - 72, with homology - 69 Number of transcription units - 39, operones - 19 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 256 - 2796 2705 ## COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit 2 1 Op 2 . + CDS 2793 - 3293 299 ## Mlut_00070 hypothetical protein + Term 3303 - 3352 15.8 + TRNA 3394 - 3467 82.3 # Ile GAT 0 0 + TRNA 3669 - 3744 88.2 # Ala TGC 0 0 3 2 Op 1 . + CDS 3982 - 4782 602 ## COG1738 Uncharacterized conserved protein 4 2 Op 2 . + CDS 4860 - 5087 214 ## Mlut_00680 hypothetical protein 5 3 Tu 1 . - CDS 5077 - 5769 197 ## Mlut_00690 predicted Zn-dependent hydrolase of beta-lactamase fold 6 4 Tu 1 . + CDS 5933 - 7936 1228 ## COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family 7 5 Tu 1 . + CDS 8272 - 8889 566 ## COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid) 8 6 Tu 1 . - CDS 9057 - 9278 124 ## Mlut_00730 hypothetical protein 9 7 Tu 1 . + CDS 9175 - 10173 647 ## COG0512 Anthranilate/para-aminobenzoate synthases component II 10 8 Op 1 7/0.000 - CDS 10219 - 12471 1122 ## COG0515 Serine/threonine protein kinase 11 8 Op 2 4/0.077 - CDS 12567 - 14663 1391 ## COG0515 Serine/threonine protein kinase 12 8 Op 3 19/0.000 - CDS 14660 - 16072 1286 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 13 8 Op 4 4/0.077 - CDS 16102 - 17427 1327 ## COG0772 Bacterial cell division membrane protein 14 8 Op 5 7/0.000 - CDS 17523 - 19250 1243 ## COG0631 Serine/threonine protein phosphatase 15 8 Op 6 5/0.000 - CDS 19254 - 19814 450 ## COG1716 FOG: FHA domain 16 8 Op 7 1/0.154 - CDS 19811 - 20914 582 ## COG1716 FOG: FHA domain - Prom 21024 - 21083 80.3 + TRNA 20997 - 21083 72.0 # Leu CAG 0 0 - Term 21080 - 21119 12.1 17 9 Tu 1 . - CDS 21155 - 21505 238 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins 18 10 Op 1 . + CDS 21523 - 22689 931 ## COG3181 Uncharacterized protein conserved in bacteria 19 10 Op 2 . + CDS 22767 - 23246 484 ## Mlut_00850 hypothetical protein 20 10 Op 3 . + CDS 23248 - 24753 1304 ## COG3333 Uncharacterized protein conserved in bacteria + Term 24789 - 24851 13.3 21 11 Tu 1 . - CDS 24864 - 25829 875 ## COG2301 Citrate lyase beta subunit 22 12 Tu 1 . + CDS 26174 - 27454 1166 ## COG0334 Glutamate dehydrogenase/leucine dehydrogenase + Term 27542 - 27581 -0.9 23 13 Op 1 . + CDS 27717 - 28268 586 ## COG2353 Uncharacterized conserved protein 24 13 Op 2 . + CDS 28341 - 29066 700 ## COG0412 Dienelactone hydrolase and related enzymes 25 13 Op 3 . + CDS 29153 - 30058 514 ## Mlut_00910 hypothetical protein 26 13 Op 4 . + CDS 30111 - 31502 1113 ## COG0160 4-aminobutyrate aminotransferase and related aminotransferases 27 14 Op 1 . - CDS 31660 - 34083 681 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 28 14 Op 2 . - CDS 34148 - 35275 702 ## COG0039 Malate/lactate dehydrogenases 29 15 Tu 1 . + CDS 35298 - 36146 686 ## COG0561 Predicted hydrolases of the HAD superfamily 30 16 Op 1 . - CDS 36178 - 37878 351 ## COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen - Term 37927 - 37966 -0.5 31 16 Op 2 . - CDS 37969 - 38517 399 ## Mlut_00970 protein of unknown function DUF88 32 16 Op 3 . - CDS 38551 - 39546 743 ## Mlut_00980 hypothetical protein 33 17 Op 1 . - CDS 39665 - 41218 1396 ## COG0833 Amino acid transporters 34 17 Op 2 . - CDS 41268 - 42341 1051 ## COG2008 Threonine aldolase 35 17 Op 3 . - CDS 42347 - 43021 402 ## Mlut_01010 short-chain alcohol dehydrogenase 36 17 Op 4 . - CDS 43025 - 44524 1377 ## Mlut_01020 hypothetical protein 37 18 Op 1 . + CDS 44579 - 45037 339 ## COG1522 Transcriptional regulators 38 18 Op 2 . + CDS 45079 - 46008 614 ## COG0584 Glycerophosphoryl diester phosphodiesterase 39 19 Tu 1 . - CDS 46020 - 47516 1263 ## COG1012 NAD-dependent aldehyde dehydrogenases - Term 47627 - 47671 0.3 40 20 Op 1 . - CDS 47713 - 49431 1535 ## COG0033 Phosphoglucomutase 41 20 Op 2 . - CDS 49499 - 49927 294 ## COG0735 Fe2+/Zn2+ uptake regulation proteins 42 21 Op 1 . + CDS 50089 - 51207 894 ## Mlut_01080 hypothetical protein 43 21 Op 2 . + CDS 51204 - 53327 1636 ## COG0500 SAM-dependent methyltransferases 44 21 Op 3 . + CDS 53426 - 53983 462 ## Mlut_01100 hypothetical protein 45 22 Tu 1 . - CDS 53993 - 55534 1270 ## COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases 46 23 Op 1 . + CDS 55585 - 55911 330 ## COG0607 Rhodanese-related sulfurtransferase 47 23 Op 2 . + CDS 55908 - 56858 547 ## COG0077 Prephenate dehydratase + Term 56859 - 56914 2.2 48 24 Tu 1 . - CDS 57142 - 58320 1046 ## COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase 49 25 Tu 1 . + CDS 58364 - 59647 1115 ## COG0172 Seryl-tRNA synthetase 50 26 Tu 1 . + CDS 59762 - 60571 739 ## COG0561 Predicted hydrolases of the HAD superfamily + Term 60683 - 60736 1.3 51 27 Op 1 . - CDS 60599 - 61228 498 ## Mlut_01170 hypothetical protein 52 27 Op 2 . - CDS 61318 - 61905 609 ## COG0221 Inorganic pyrophosphatase 53 28 Op 1 2/0.154 + CDS 61886 - 63436 896 ## COG2027 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) 54 28 Op 2 2/0.154 + CDS 63462 - 64679 973 ## COG5282 Uncharacterized conserved protein 55 29 Op 1 10/0.000 + CDS 64792 - 65844 568 ## COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control 56 29 Op 2 . + CDS 65894 - 66445 585 ## COG0634 Hypoxanthine-guanine phosphoribosyltransferase 57 30 Tu 1 . - CDS 66481 - 67545 673 ## Mlut_01230 hypothetical protein 58 31 Tu 1 . + CDS 67544 - 67795 65 ## 59 32 Op 1 4/0.077 + CDS 68039 - 70030 1306 ## PROTEIN SUPPORTED gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 60 32 Op 2 4/0.077 + CDS 70048 - 70668 605 ## COG0302 GTP cyclohydrolase I 61 33 Op 1 15/0.000 + CDS 70776 - 71609 677 ## COG0294 Dihydropteroate synthase and related enzymes 62 33 Op 2 17/0.000 + CDS 71606 - 71986 159 ## PROTEIN SUPPORTED gi|148994682|ref|ZP_01823786.1| 50S ribosomal protein L13 63 33 Op 3 . + CDS 71983 - 72627 376 ## COG0801 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase + Term 72731 - 72782 -0.1 64 34 Tu 1 . - CDS 72360 - 75122 532 ## 65 35 Op 1 . + CDS 73647 - 75326 1133 ## COG3428 Predicted membrane protein 66 35 Op 2 . + CDS 75323 - 76273 804 ## COG5495 Uncharacterized conserved protein + Term 76290 - 76327 1.7 67 36 Tu 1 . - CDS 76423 - 76899 396 ## COG0394 Protein-tyrosine-phosphatase 68 37 Op 1 . + CDS 76868 - 77164 76 ## 69 37 Op 2 . + CDS 77161 - 77610 439 ## Mlut_01340 hypothetical protein 70 37 Op 3 . + CDS 77706 - 79859 1790 ## COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases 71 38 Tu 1 . + CDS 80030 - 81256 1285 ## COG0584 Glycerophosphoryl diester phosphodiesterase 72 39 Tu 1 . + CDS 81470 - 81950 411 ## Mlut_01410 hypothetical protein Predicted protein(s) >gi|289556262|gb|ADCD01000103.1| GENE 1 256 - 2796 2705 846 aa, chain + ## HITS:1 COG:Cgl0012 KEGG:ns NR:ns ## COG: Cgl0012 COG0188 # Protein_GI_number: 19551262 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit # Organism: Corynebacterium glutamicum # 1 845 21 856 856 943 57.0 0 MKRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPDRAFNKSARVVGDVMGN YHPHGDTAIYDALVRLIQDWVQRYPLALGQGNFGSPGNDGAAAQRYTETKMAPLAMEMVR DIDEDTVDMQDNYDGKQQEPVVLPARYPNLLVNGSSGIAVGMATNIPPHNMREVAAGVQW YLEHPEATREELLEALLARVHGPDFPTGAQILGRKGIEEVYRTGRGPITMRAVVNVEEIQ GRTCLVVTELPYMTNPDNLAAKIAEMVRDGKINGIADMRDETSGRTGQRLVIVLKRDAVA KVVLNNLYKHTELQSNFSANMLALVDGVPRTLSLDGFVHHWVKHQIDVIVRRTAFRKRKA EERAHILRGLLKALDMLDEVIATIRRSASADVAREALKELLDIDDVQAQAILQMQLRQLA ALESQKIQDEYDDLMAKIAEYNRILESPQRQREVISEELAEIVAKHGDDRRTEIMAGFDG DMSIEDLIPEEEMVVSITRGGYVKRTRIDQYRSQARGGKGVRGATLRGDDVVEHFLTVST HHWLLFFTNFGRVYRIKTYELLEAGRDAKGQHVANLLAFQPDERIAQIQPLVDYGRAPYL VLATRGGLVKKTPLLDYDTNRTAGLIAIKLREGDELVSARVVSPDDDLILISHKGQSLRF TATDEALRPMGRATSGVTGMKFRDDDSLLTMDVVEEDGYVFTVTDGGFAKRTHVDEYRLQ NRGGLGIKVAKLVDDRGELAGGLVVREDQEVLVVMASGKVVRSAVAGVPAKGRDTMGVIF AKPDKRDRIVAVTLNNEQEMEAKADAEAEAGPDVPLDADIDPTDPVAAPEDALTQDAGEG ADGGEQ >gi|289556262|gb|ADCD01000103.1| GENE 2 2793 - 3293 299 166 aa, chain + ## HITS:1 COG:no KEGG:Mlut_00070 NR:ns ## KEGG: Mlut_00070 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 166 1 166 166 238 99.0 5e-62 MSTSASSRSGQGRSTGKAAEPRSGRPVRKASGSSQEDLVRAVPKAKVRRARLVLTRVDPW SVLKLAFLLSVALGILTVVAAVALYSLSDVLGIFDRVNDVIGTVLGSEAGRYTVASLAPL STVTSLATVLAVVNVILLTALATVAALLYNLCASLVGGLGVTLTDD >gi|289556262|gb|ADCD01000103.1| GENE 3 3982 - 4782 602 266 aa, chain + ## HITS:1 COG:Cgl0234 KEGG:ns NR:ns ## COG: Cgl0234 COG1738 # Protein_GI_number: 19551484 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Corynebacterium glutamicum # 13 242 12 243 250 156 39.0 5e-38 MDGPVNTTIEPQPPVRPASGQGTPAYARVPASYYDIFVGVFIALLILSGVTAAKLFYGPT VPVVSDLFYDGGPLIFDGGAFLFPFAYIVGDILAEVYGWRRARRAIVLGFAMLVLAALTY TVVSWTTPVEGFEVWDQALAPMLRITVAGFVAFLVGSLLNASIVVRLKERMKERHVAFRL ILSTVVGQFFDTLIFCTIAYAGTISLLELANYTVTGFAYKTLVEILIVPVTLLVIRALKR REPTYRAPGFEIHRDDDPALAPAASR >gi|289556262|gb|ADCD01000103.1| GENE 4 4860 - 5087 214 75 aa, chain + ## HITS:1 COG:no KEGG:Mlut_00680 NR:ns ## KEGG: Mlut_00680 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 75 1 75 75 109 96.0 3e-23 MGKDLFEHEQQQTLSREQAAARLRDLADQLSRQNEVRVEHGGRDVVVTVPDRVGLEVELE VEEGGDAELEITLSW >gi|289556262|gb|ADCD01000103.1| GENE 5 5077 - 5769 197 230 aa, chain - ## HITS:1 COG:no KEGG:Mlut_00690 NR:ns ## KEGG: Mlut_00690 # Name: not_defined # Def: predicted Zn-dependent hydrolase of beta-lactamase fold # Organism: M.luteus # Pathway: not_defined # 1 95 1 95 215 164 98.0 3e-39 MSTTLTLFGHSAVRLEKAGRRLAFDPGAFSDAAVLDGADAVLVTHGHPDHVVPEQLARAV AGTEAHVWAPRDLTGPLAEAGLDAGRVHTAVPGETVRGRRLPGGGARRGARGDPRRGAAP GQRVLPRGRGRAAPRRLVHGAGRRRRGAPAARRGTVAAHRGGGGPDAGHRGHAHPPHPRR HPQRGRQGRGGRGALGARRGRDRLPALGPRGALDVLRHGEAAAGPGPVTS >gi|289556262|gb|ADCD01000103.1| GENE 6 5933 - 7936 1228 667 aa, chain + ## HITS:1 COG:Cgl0034 KEGG:ns NR:ns ## COG: Cgl0034 COG0652 # Protein_GI_number: 19551284 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family # Organism: Corynebacterium glutamicum # 489 664 14 188 190 209 63.0 2e-53 MRGPGAVRCALGARGSESALLPGLDAQHLRVGSGHRVRGGGVHPHALARRGRASLGHDLL LLGVGVVRLHHRDVRGDRARDRGGPRILHRLGQTPQGVAGAGRGGRHARDDPGAAARARG PATGGTVQVLLGRAGVLLGTLAQALHDRLVPGELDQGLLQGVRDLDVVGGLAGVRGAVGQ AGGGHGEDLLLAALGVVAGVGQAGLHLRGHLPALLLQRGQTRGEETGEGQAARRGGVLGL TGTVAEQGGGPLGVLAGALGGLLRVLAQTLGGLAAVPAQLLGLAAPTTAALLRGLLSVLA RRGELLLHLVAGVLCLGLQVLEEVLDGVHALGDGRGQQPVLVRDGLAGLPRAALDHGAVL LLGVLGLAAALLGRGGAADQPVGRGHLAPGAGGLHLRGGPVAQVLRLACDERVRAAVVLD LVVQGLASHVMPPVGSGWSLNAVVLEAQPSGRPPQWHGSRHAGSAYADRGRSRPRTAGSG RPAAADGTMGRMANKTHTATIHTNHGDIVVELFGNHAPKTVKNFVGLATGEQEWTHPQTG EKNNGAPLYSGTVFHRIIKDFMIQGGDPLGMGIGGPGYQFGDEIHPELQFDRPYLLAMAN AGPGTNGSQFFITSVPTGWLNGKHTIFGEVKDEASQKVVDELNAVATDPRDRPLEDVVIE SIDIDEA >gi|289556262|gb|ADCD01000103.1| GENE 7 8272 - 8889 566 205 aa, chain + ## HITS:1 COG:MT0119 KEGG:ns NR:ns ## COG: MT0119 COG0705 # Protein_GI_number: 15839491 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein (homolog of Drosophila rhomboid) # Organism: Mycobacterium tuberculosis CDC1551 # 26 160 110 242 284 99 45.0 5e-21 MTRDQASGVTEALWYAGLYTSPYGMEPWRMASYALVHDVSGPTHLLLNMLALWVIGRVLE PALGWWRFLALYVLSAVGGAVFALWVSDPLQPVVGASGAVYGMFAALFLLTRVRGGQVRS IAVLIGLNLVFSFLLPGVAWQVHVGGLLTGAVVAVVFSLAGGLRPGRARVPSVGAQAAGL VVVAAALAALTVLGAARVTVAGLLG >gi|289556262|gb|ADCD01000103.1| GENE 8 9057 - 9278 124 73 aa, chain - ## HITS:1 COG:no KEGG:Mlut_00730 NR:ns ## KEGG: Mlut_00730 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 73 29 101 101 130 90.0 1e-29 MRTDLGDVDPGPKPLSPGYKAVMFGLLILGLLWIIVYYLTQGVFPIVQIGGWNILVGFGI ALIGFLMMSRWSE >gi|289556262|gb|ADCD01000103.1| GENE 9 9175 - 10173 647 332 aa, chain + ## HITS:1 COG:CC1897 KEGG:ns NR:ns ## COG: CC1897 COG0512 # Protein_GI_number: 16126140 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Anthranilate/para-aminobenzoate synthases component II # Organism: Caulobacter vibrioides # 123 315 2 190 198 204 54.0 2e-52 MIQSRPRISRPNITALYPGERGFGPGSTSPRSVRTAERLRRAASSSSRFRRAESLRLPAG AATGLLLGWGGGGRPHRRGPGRGRYPADLPRTGVSDVPGQSMHPAPTRRGGKSAPVQSPE VSVLVVDNYDSFVYTLVGYLEQLGARTTVIRNDEVTPARALELAAEHTAVLISPGPGAPA DAGVSLDLIRSAADGGRPLFGVCLGHQAIAEAFGATVTHAESLMHGKTSLVRHGEHPMFE GVPSPFTATRYHSLAAVRPTVDEAVLEITAETEDGVVMGLAHRTAPLWGVQFHPESVLTE GGYRMLGNWLESVGLSGAAERGGRLSPLVRQD >gi|289556262|gb|ADCD01000103.1| GENE 10 10219 - 12471 1122 750 aa, chain - ## HITS:1 COG:Rv0014c_1 KEGG:ns NR:ns ## COG: Rv0014c_1 COG0515 # Protein_GI_number: 15607156 # Func_class: R General function prediction only; T Signal transduction mechanisms; K Transcription; L Replication, recombination and repair # Function: Serine/threonine protein kinase # Organism: Mycobacterium tuberculosis H37Rv # 1 302 22 321 428 249 50.0 2e-65 MADVFRGEDLRLHRPVAVKLMRRDLARDPHFQARFRKEARSAASLNHPSIVSVYDTGEVS LEDGLHPVDCPFLVMELVSGRTLREILHAEGAVGPDRAVAWTRGVLQALEHAHEEGIVHR DVKPANVMVTETGTVKVMDFGIAHALADTSATTSQTQAVVGTALYLAPEQATGRTVDGRA DLYAAGCLLFELLTGRPPFTGDTPLAVAYQHVREEPPAPSDVDPDLPPAFDPVVLRALRK DPEDRFPTGAAFLAALEEAAADPHAAPGRHTPLLDAFPPALAGAGGADPRATPAEHGADD ADVPTATVPLTRPTPSVPAEPDVAQPQAANHAVAGAGLPGAASAAQLAAAAAMDGPRPVT GGQPVTPGAAATPRPEPPPRDTPAPATAAPRRVRRRVRRRTLLAAGVVLVALALVLAPWL AAALRTTVEVPAVVGLQQDEAVAALEDAGLVAVVSSAYMADAPDGTVTQSDPQTGTEVPR GAEVRIRVSRGEEGIALPDSLHGLSEDAARRELERLGLRVSSVQYQDDGRLERGLLARTD PAMGTHVPPGSSVVLHLSSGMVAVPDVVGMSAPDARRQLALSAPELRVRIQDEDGATTDT GTVVAQDPPAGVRVDNRSSLTLTASSWIAPTAEPSEPAPPSSEAPEPTPSASAPPSPPPS ESPEPSESAEPSESAEPSPSPSASATPTPEPTATATPSPTQSPSSTSAAPSTSPGPTEQS PSTSPTGTPVDPLPTLTPDPEPSIDPPPST >gi|289556262|gb|ADCD01000103.1| GENE 11 12567 - 14663 1391 698 aa, chain - ## HITS:1 COG:MT0018 KEGG:ns NR:ns ## COG: MT0018 COG0515 # Protein_GI_number: 15839389 # Func_class: R General function prediction only; T Signal transduction mechanisms; K Transcription; L Replication, recombination and repair # Function: Serine/threonine protein kinase # Organism: Mycobacterium tuberculosis CDC1551 # 1 270 1 275 431 249 54.0 1e-65 MRPTSGITLGGRYQLTDRIAIGGMGEVWKARDKVLGRITAVKILKEEYTGDPNFLRRFRA EAQHTALLNHPGVANVYDYGEEKGSAYLVMELVPGQPLSSILEKEKVLSPERTLRIIAQT AAALSAAHAQGLVHRDVKPGNLMITPTGRVKVTDFGIARLADQVPLTATGQVMGTAQYLA PEQATGQQATGSSDLYSLGIIGYEALAGHRPFTGESQIAIALAQVNDTPPPLPDTVPAPV RALIMCMLSKDPKERPSDATALSEAADALRRKDTRGAVEAVPGLAVFLEEQGVADPSGAE TAPLDYDGMRTTHPRAEGTRTDGSPATAALPVTAAQPRTDDDARGPGAAGAAAVGAAGAA GAAASASTRDHEIAAVRDQPTRPGDVVDPGPPAGGGSAPARRRRANPWPLWALLGLVVFA LLGALLWPLLTGGRGDGGSAPATSQEESSVNVDPEAYKGRPVSEVRAELEGLGLAVREED RDAQSPQGTVEEINPVGALQRGETVTLAVSTGEGVIPEGLVGQPVDSAIQTLRDRGFTVD RVDDPSADGADGEVVRVVPGEGERHRYDTHVQLIVATGGSDAAPTREASQPASEPEPSAS EEPSSEPSSEPSPSASDEPSPSPTAESPTATADPEPTQEPTEEPTTPTGDPTTESSGEST APTGQPTTDPSADARGAEASSADARGAQASSADATPSA >gi|289556262|gb|ADCD01000103.1| GENE 12 14660 - 16072 1286 470 aa, chain - ## HITS:1 COG:ML0018 KEGG:ns NR:ns ## COG: ML0018 COG0768 # Protein_GI_number: 15826881 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Mycobacterium leprae # 3 445 14 462 492 257 37.0 4e-68 MAAMLLVLALAASVIQVLAADQLKTHALNSRQMFLEFGAPRGPILVDGEPIAESVPSDDA YHYQRVYHETELYAPLTGFYSLTYGTDGLEAAMNEQLSGTPTSQFVDRAMEIITGATPEG DQVELTIDPELQRLAYDALPDGVRASAVVTDPTTGEILAMVSKPGFDSNALSSHSPAEAQ SAMAAIDQIPGASAYRNRAAEQLVSPGSTFKLIDAVAMLESGDYTPDGTVDIPAAWTLPG TTTELPNYDGSPCNTVGRQTLTWALAQSCNTPFAMAAVELGQDRIREVAERFGFNDSFDY PLPVTGSVFPSDLDDAALAQSSIGQRDVQATALQMAMVAAGIANDGVVMEPQLIKAVRRS DLTTVQEFSPRERGRATTPEVAGQVSDMMVSAVEDGILGSVQSDTVRIAAKSGTAEVGDT GNVHSWITGFDASENPRAAVTIVVEDEPPGVGHQTIVSGMKAIMEAVVTE >gi|289556262|gb|ADCD01000103.1| GENE 13 16102 - 17427 1327 441 aa, chain - ## HITS:1 COG:MT0020 KEGG:ns NR:ns ## COG: MT0020 COG0772 # Protein_GI_number: 15839391 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Mycobacterium tuberculosis CDC1551 # 16 406 60 448 469 296 45.0 8e-80 MIGTDAPLDSTAWVPLGVFGAATLVLHVVLRLRAPYADPFMLPITALLNGLGLAMIHRLS QDAAMANPTSQLAWSVLAIVVASALVFLVRDHRVLRRWPYLFLAASGVLLLLPLVPGLGL SMYGARIWIDVGFGTFQPGEIAKITLAIFFAGYLSANRDLILLAGRRVGPVTFPRARDLG PLLAGWLLALGVLVFQRDLGSALLFFGMFMAMLYIATSRASWILLGLGLIAFGAALAFLF MPHVTARFEIWLRAFDPEIYHRDFGGSYQVVQGLFAMASGGLMGTGLGAGNPTQVPLSFS DMILTAIGEELGFVGLAAVLVLYLLLVTRMMRAALGVRDAFGKVLASGLAFTMAWQVFVV MGGVTLVLPLTGLTTPFLAAGGSSLLANWIIVGLVLRISNAARRPVVVDGMVNASGPGAG HLDPGTALPAAAVPPGGGEER >gi|289556262|gb|ADCD01000103.1| GENE 14 17523 - 19250 1243 575 aa, chain - ## HITS:1 COG:ML0020_1 KEGG:ns NR:ns ## COG: ML0020_1 COG0631 # Protein_GI_number: 15826883 # Func_class: T Signal transduction mechanisms # Function: Serine/threonine protein phosphatase # Organism: Mycobacterium leprae # 1 239 1 237 237 186 48.0 1e-46 MTLVLRYAARSDVGRVRAKNDDSAYVGRHLAVLADGMGGHVGGDVASASTVLDLAPLDAV GYEDPATVLPDEIQNANLILNELVHANPKLAGMGTTCTAGLLAGTTLYMAHIGDSRAYRL ADGEFSQVTTDHTFVQKLVDEGRLEAGEAPFHPNKNVLMRVLGDVDASPELDVFEVPVAP GERWLFCSDGLTDVVSPEKIHEVLRDSEALNQAVDTLVDLTLKGGAPDNVTVVAFEIAEG TAEELAPVPDVHLSEQALAAAHPPEVGPVSGLLLREDLDARPHLLVGAASNAVKTDRIPV VTRSSTRRRAAALLGETPVPENRPRRTATVPTDGPGPAADAAPRPDASAPPAAPSGTAAA AAAGSSAAATPAATAADRPSDEAAEASTTAATPPLVTSGPAGGSEDGAARRRRGKDDRPV QYRRGWFIPVFTTLLALTLAAVAVWGYLWTQTQYYVGANDGRIAVFKGVSQRLGPLELSH VDRQTDLPVDALPAYARDRVNAGMAARDVDHAEQIVGELRDSLHPDAPAPAGEPSERARP STTPSSSSARPSDASGSAAPTSPAASPSATGGEAP >gi|289556262|gb|ADCD01000103.1| GENE 15 19254 - 19814 450 186 aa, chain - ## HITS:1 COG:ML0021 KEGG:ns NR:ns ## COG: ML0021 COG1716 # Protein_GI_number: 15826884 # Func_class: T Signal transduction mechanisms # Function: FOG: FHA domain # Organism: Mycobacterium leprae # 92 184 61 153 155 100 58.0 2e-21 MSELAVAVLRMGLLLALWVLIISIVMAQGRDLVVGRRNKTRLQQAQRDAGLVTAAPAAGV AGAGSSAVDRPAPASTPAPAASAPTTPAPRLSRTLRVVEGPKAGQTIALEGRPLLMGRAQ DADLVLVDDYASGRHARLFPQGTRWFLEDLGSTNGTYVNGAPVTRALPVGPGTAIRIGKT VMELEA >gi|289556262|gb|ADCD01000103.1| GENE 16 19811 - 20914 582 367 aa, chain - ## HITS:1 COG:slr1991_1 KEGG:ns NR:ns ## COG: slr1991_1 COG1716 # Protein_GI_number: 16330472 # Func_class: T Signal transduction mechanisms # Function: FOG: FHA domain # Organism: Synechocystis # 290 365 31 106 126 63 46.0 9e-10 MQIDPDAHPRVPAAPVARPLRHLSHPLSTPQNAAVLGGLPARPVVSGRTTVERSPVVGLL DNLERGLERVVRSAFSAGGPRAVKPVEIASALRQAMDDESLALSEGHTVAPNSYVVHFSP ADFERARSWGSTLASELCDEVIRHADSQGYALPGTVRVAFHPDADVRAGDLRVVTRLDDG SLTAPAPHDDGASPATAHGPGASAAAPDRLVEDLPAAAPREPSPAPRVGPRPAPRRAAAP AAPAAPAAPAAPAHADQPTVVMGRPVTEPAGPALELDGRMLLLDGDDLILGRSAERADLV IPDSSVSREHLRLLTVGSTVTLLDLGSRNGVLVNGRRVDGSVTLRDGDVVTVGQTELLFF GGTGGRA >gi|289556262|gb|ADCD01000103.1| GENE 17 21155 - 21505 238 116 aa, chain - ## HITS:1 COG:AF0987 KEGG:ns NR:ns ## COG: AF0987 COG0589 # Protein_GI_number: 11498592 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Archaeoglobus fulgidus # 20 115 20 130 130 68 44.0 3e-12 MTIISTGTSTPESAAAWRAALAEAALRGEDVVWFSLDGTEPDEAESREAGVAVSVAHAQE RGRDAVGDLLEHAERVGASRIVVGVKHRSPVGKLLLGSAAQQIILEARVPVVCVKP >gi|289556262|gb|ADCD01000103.1| GENE 18 21523 - 22689 931 388 aa, chain + ## HITS:1 COG:Cgl2764 KEGG:ns NR:ns ## COG: Cgl2764 COG3181 # Protein_GI_number: 19554014 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Corynebacterium glutamicum # 88 387 35 333 334 372 62.0 1e-103 MVAVPVTTRTGCRRSLFGRRAHAAPLRCYRDLHHSHLSPAPLPGGGVSLLGTAMSSTSPD GPPRRRTGIGRIVFSVIAVLTVLAASAFSVRSASGGNDIRTNLTLIAPAAAGGGWDSFQR ELQQTMRVNGLVNNVQVVNIPGAGGNIALGQLTTLEDANNLMVGGTGQIAAHAARGTGPE LSQVTAVSRVVEEYSLVVVPADSPYQSMDDLVTAWRADPAHVAWTGGGSFDQLVMADIAR TADVPVADTTYIPSDGGGEAIQALLNGTAQASAGGFADIYPQVQAGRLRALGVVAAEPLA GVEEIPTLRSQGYDVTLTNWRALFVPPGVSAEERTELEALIAEAVDTPEWKEAVQRNYWN PVPLSGTELEEFIAAEKERIGTLTEEIK >gi|289556262|gb|ADCD01000103.1| GENE 19 22767 - 23246 484 159 aa, chain + ## HITS:1 COG:no KEGG:Mlut_00850 NR:ns ## KEGG: Mlut_00850 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 159 28 186 186 244 98.0 7e-64 MPAVLAAFSLYLLLGSLAMDTDGADFPGPDFFPLILAVAGLVIAAALAVEVVRVRQAPEG QADADGEVGQAAGPLTLFHSDFGALAWCFLGFLAFAVLLPWLGWILAGALLFWCVTRAFG APHPVFDILVALFVSSLAYLGFAVALGLTLPSGILGGGF >gi|289556262|gb|ADCD01000103.1| GENE 20 23248 - 24753 1304 501 aa, chain + ## HITS:1 COG:Cgl2762 KEGG:ns NR:ns ## COG: Cgl2762 COG3333 # Protein_GI_number: 19554012 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Corynebacterium glutamicum # 1 499 1 500 510 712 82.0 0 METLGLLMEGFAGALTPMNLLWVVLGCLLGTAVGVMPGLGSSMAVALLLPMTFALEPTAA FIMFSGVYFGGLFGDSTMAILMNTPGQASAIASTFEGHRMAQDGRAAQALATAALGAFIG GMVASVCVVFLAPVLAEFSTSFGPAEYFALALFAFVATSSVVADSVLRGLASLVLGLGIA VVGIDAVTGTERFTMGSPQLFDGIPLVTVTVAILALGEVFHVASRVRREHEDLRIRRTGR PWLSGAEFREAAPAWLRGTAIGLPFGIVPVGGSEVPTFLAYSAERRLDRRRAHPQFGRGA IRGLAAPEAAGNSTTGMAMGALLTLGLPVSATAAIMLAAFRQYGLQPGPLLFDRSPDLVW ALLASFFIAMIVLLAINLPFAQLWAKLLLIPKHYLYAGITLFCGLGIYATTGAVFDLLML LGIGVLGFLMRRYGYPLAPLMIGMVLGPLAETSLRDALLSSVGDPAVLVSTPITWVIYGI LAIVLAFSVRAAVVRRTRQDV >gi|289556262|gb|ADCD01000103.1| GENE 21 24864 - 25829 875 321 aa, chain - ## HITS:1 COG:MT3160 KEGG:ns NR:ns ## COG: MT3160 COG2301 # Protein_GI_number: 15842645 # Func_class: G Carbohydrate transport and metabolism # Function: Citrate lyase beta subunit # Organism: Mycobacterium tuberculosis CDC1551 # 17 321 15 307 307 382 65.0 1e-106 MTVTLPAAITPSPAFQPVPGQRIDPELARSWLLVNAAQPERFQPAEDSAADIVILDIEDA VAPKDKDQARADAVAWLTSGHTGWVRLNGYGSRWWEQDVEALAAALPAHLGGPVSEGGLA GVVLAMVESTDHVNETARRLPGVPVVALVETARGLQRIDSIAAAKGTFRLAFGIGDFRRD TGLGESPMALAYTRSQFTIAARATGLPGAIDGPTVGSTGVKLAEATAVTAEFGMTGKLCL APEQCAAVNEGLSPSQEELAWAHEFLADFEADGGEIRNGSDLPRKARAEKILGLATAFGV HSTRYPDQDNAITAPSDTYHY >gi|289556262|gb|ADCD01000103.1| GENE 22 26174 - 27454 1166 426 aa, chain + ## HITS:1 COG:TM1015 KEGG:ns NR:ns ## COG: TM1015 COG0334 # Protein_GI_number: 15643773 # Func_class: E Amino acid transport and metabolism # Function: Glutamate dehydrogenase/leucine dehydrogenase # Organism: Thermotoga maritima # 21 426 10 416 416 414 52.0 1e-115 MTRIPAEDEAVTAPSSPLDNALAQLSAAVKTLGYDEGLHQMLAAPRREMAVSIPLRRDDG STEVLRGYRVQHNFSRGPAKGGVRFSQDVDLDEVRALAMWMTWKCALLDVPYGGAKGGVA IDPRQYSKAELERVTRRYTSEIQPIIGPEVDIPAPDVGTDEQTMAWMMDTYSVNVGHTTL GVVTGKPVSLGGSLGRASATSAGVVHVALAALEHLGIEPSQATAAVQGFGKVGAGTVELL EAAGVKVVAVSDQYGAVRDDEGLHYDALQRQLWDTGSVKDTPGTGPMDADELLEMDVDLV VPAAVQSVLTEENAPRVRARLVVEGANGPTTGEADRILAEKGVLVVPDILANAGGVIVSY FEWVQANQAYWWSREEVDERLKRRMVAAWQAVLATSESRRVSLREAATLTAVQRVAEAHR TRGLYP >gi|289556262|gb|ADCD01000103.1| GENE 23 27717 - 28268 586 183 aa, chain + ## HITS:1 COG:Cgl1144 KEGG:ns NR:ns ## COG: Cgl1144 COG2353 # Protein_GI_number: 19552394 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Corynebacterium glutamicum # 6 175 5 176 179 142 46.0 3e-34 MHAITTGTWNLDAAHSDVDFVVRHAGISKVRGTFHAVEGQLAIAEQFTQSSVDVTVDVAS ISTKNEGRDGHLRSGDFFDVEQFPTMTFRSTEVRGEPEEFTLVGELTLHGVTQTVELEAE FGGQDKDPFGATRVGFEATGEISRKDFGLTWNAATEAGGVLVSDKVKLEIGAAFVLPEAD AQA >gi|289556262|gb|ADCD01000103.1| GENE 24 28341 - 29066 700 241 aa, chain + ## HITS:1 COG:RSp1308 KEGG:ns NR:ns ## COG: RSp1308 COG0412 # Protein_GI_number: 17549527 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Dienelactone hydrolase and related enzymes # Organism: Ralstonia solanacearum # 29 236 20 229 238 125 42.0 6e-29 MMASKTPHQNVTFDLPTKDAGQDGDRTGHGYLALPASGKGPGVIVIQEWWGLVDHIKDVC DRLADLGFVALAPDLYGGWIAHDGDEAGEMMQNLPAEEGARQLAGAVDWLLARDEVTSQT VGAIGFCMGGGFVLALAAQQGDKVSAAVPFYGVGQGVPGDFSGVTAAVQGHYAEQDDSFP VEDARRQEQQIREESGADVEYFYYDAPHAFHNDENPQGNHRPEAAALAWDRAVSFLKEKV R >gi|289556262|gb|ADCD01000103.1| GENE 25 29153 - 30058 514 301 aa, chain + ## HITS:1 COG:no KEGG:Mlut_00910 NR:ns ## KEGG: Mlut_00910 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 301 1 301 301 433 97.0 1e-120 MAKGVKPAGRAGGEGRRRPAPAPPADLPVPPETLFLATIPGATPSTWVERFTTRQRTVQL VNHDDAAQLAHLAHDDAGQPRHFLPQLGYVRRRRDVPAEEFLRAGGVDPRHVHLVGVYSE LPVVCVGRDHLLAAWDVDADGPVSPAELDPDEELDPARFAPAPSAEPMDAAELPGAGERM ALEIAASGAGHVVLPMSVARMFGRKDVIVLPLASTLDDTVGLSRADREAAATRSALADEQ ARTEAEAGAAVVDGPDSAGQGDDDARHPGWDVALAWLKAVDSELVQAFVGVARGRRGASS R >gi|289556262|gb|ADCD01000103.1| GENE 26 30111 - 31502 1113 463 aa, chain + ## HITS:1 COG:Cgl2387 KEGG:ns NR:ns ## COG: Cgl2387 COG0160 # Protein_GI_number: 19553637 # Func_class: E Amino acid transport and metabolism # Function: 4-aminobutyrate aminotransferase and related aminotransferases # Organism: Corynebacterium glutamicum # 16 447 18 438 456 384 47.0 1e-106 MSEHQQHVGRRDPRISDEAIERGRRAHELDRAHVFHSWSAQRDLNPMTILDAEGSWVWDG EGRPMVDFSGQLVFTNVGHRHPKIVAAIREQAETLATVAPQHVNDARSEAARLITERLPE SINHVFFTNAGAEANEHAVRMARLHTGRHKVLSAYLSYHGATRLTANLTGSLRRVGSDSA SDGVVHFQPAYTYRSAFGSESDEQEAERALAHLRDVIELEGPSTVAAVVLEAVPGTAGIF LPPPGYMAGVGELCREHGILLIIDEVMVGFGRVGEWFGHQLTGVTPDIVTFAKGVNSGYV PLGGVAMSDDVYESFATTPYPGGLTYSGHPLACAAAVAAITAMEEEGMVAHAKRIGGQII GPRLAEIAAAHPSVGDVRGAGAFWAVELVKDRQTRERLAPLGQVAPVMGRMMAEAKDRGL LLFMAENRFHLCPPLNISDEDLRFGLDVLDQVLTLADEEVAAG >gi|289556262|gb|ADCD01000103.1| GENE 27 31660 - 34083 681 807 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 394 799 8 435 447 266 35 2e-70 MRNRFVRGRASVGSVRQLGPRGRVRARAGGRDRRRAGGVDQHRLDVGRVHRVQAAAVRGA QQGAVVEGGEQGGGERVTGAHGVRDVHGHDRALHHAVRGDGHDVLGAAGHHHERRAHLLP RLQRLAQRAVRVQPRDVLVRGVHHVRQPHGLLRAGAGERPVRHDRGPHVGVVADGRDRGD PLEQGHHLGVAGGEHGGDGTGMHVVQGAAGGVVEVPGERGGGRQRPVQLELIAGGTRGVQ AGGGHGGGCGIRPEQAAHAVLPQVRGDHVPVRIAAEAAGEQDGPLQPAQAHGHVQGAATD VHAGGRGVRDHDVDERLSDHTTVLSHAPHGTLITGAEPGLCAGFQAPEKRPTPPSPTPRQ AAMSPTPTRPSRGPGWRLHGDGRTITPGTVVAPDERLSWPRTVGIGVQHVMAMFGATVLV PALTGMPATTALLFSGLGTLLFLVITGNRLPSYLGSSFAFIAPLTAAATIGGTGAALGGI LVTGLLLTVIGAIVHRAGTGWIHALMPPAVMGTIVALIGLNLAGATTTAMQEVPVTTFGT ALAVVLTAVAFRGLLGRLSILVGIVVGYLLALAQGQVDFAAVGEAAWIGLPPFHGPELRW DLLPLFLPVVLVLVAENIGHVRTVGLMTKRDLDPLTGRALIADGLSTMLSGAGGGVGTTT YAENIGVMASSRVYSTAAYWVAGLTAIALAFLPKFGAAVATIPAGVAGGAGIILYGMIGM MGVRIWVQNRVDFSNTVNLMTAGAGLIIAIADPQLVVGGLVFGGITLGTVAALVVYHLMT AIARARGTEPVPEDEEQFEASEAGRLG >gi|289556262|gb|ADCD01000103.1| GENE 28 34148 - 35275 702 375 aa, chain - ## HITS:1 COG:MT1278 KEGG:ns NR:ns ## COG: MT1278 COG0039 # Protein_GI_number: 15840685 # Func_class: C Energy production and conversion # Function: Malate/lactate dehydrogenases # Organism: Mycobacterium tuberculosis CDC1551 # 35 375 2 329 329 340 63.0 3e-93 MRRAGVSSAGEQGHDGGVDTAQQTTAQDTAPDPASTTPRTVTVTGAAGNIGYALLFRIAA GGMLGPDTPVRLRLLEIPAARGVAEGTAMELADAAFPLLADVEVTDDPARAFDGVRHALL VGARPRTKGMERGDLLEANGGIFGPQGRAINDHAAQDVRVVVVGNPANTNALIAAAHAPD VPAERFTALTRLDHNRAVAQLAARAGVAVTDVAGVTIWGNHSATQFPDLTHARVRVDGTW QPALEVVDPVWAGEEFVPRVAKRGAEIIEVRGASSAASAASAAIDHLRDWTLGTGVDADG APRRTSAAVVSDGSYGVPEGLISSFPVTSDGGTAWRIVPGLEPDESVLPGEGGRLAATVA ELEAERDAVRGLGLL >gi|289556262|gb|ADCD01000103.1| GENE 29 35298 - 36146 686 282 aa, chain + ## HITS:1 COG:Cgl2829 KEGG:ns NR:ns ## COG: Cgl2829 COG0561 # Protein_GI_number: 19554079 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Corynebacterium glutamicum # 11 274 8 275 278 115 32.0 7e-26 MPALPLPSRRPRMIATDLDGTIIGYRHTRSGRLSPRTITALRDAHDAGVEVVFVTGRPLR WLGPLSAQLGPVGPVICSNGAVVVDTATDDVLIAHPMPVEAVWTATDRLRALDRTVSFGA ETLEGFFWEHAFSERAEFRAEVHAAATLEAALPGRLGVVKLLARSDTLAPDAFLAAARAE LDELVSATHSAPGIALVEMSAPGVHKAATLAEFAASKGVAPADVVAFGDMPNDLEMLQWA GLGLAVASGHPSLLAAADGVVGACDDDGVAATVERLLELPAD >gi|289556262|gb|ADCD01000103.1| GENE 30 36178 - 37878 351 566 aa, chain - ## HITS:1 COG:DR2199 KEGG:ns NR:ns ## COG: DR2199 COG2865 # Protein_GI_number: 15807192 # Func_class: K Transcription # Function: Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen # Organism: Deinococcus radiodurans # 292 486 281 472 596 88 34.0 4e-17 MARALDALERGATAADLESQTLDFKRDPATVAEFRGNPRAQLIDELTTAVICFANADGGH IVLGVDDKSSGPEAFTGTSADRNDLRARLHHNTTPPVTVDIREEHRHEHRILVIRVVEGL DLVTNSKGVAHQRRGTDCHPMSEAARRHLGYTRRNPDFTARRSERGPKDVSSDALDHVRD LLRRLPDLRRQLADLHDDDLLRSLGAVDGQGNLLVAGELVLCPPDHDTVDFLTRPAPGAE PSTRRLRLPVAQALTTVMGLINTAINPEVTSIPLPTGQELALPDFSPLAVEEAVTNALVH RDYGVRDRVVIDHSATTLTVHSPGSLPYGVDPDRLLSTVSTPRNPQLMSLLQQLGLAERT SRGIDRMFREQIRVGQTQPVIEPDDYSVTVRFSTGAPNRAFARFLATLPPELRENVDAIL LLDHLCRRPSLSADEAARILQVPVDEASHRVDTLSTAPHALFERSSSPSSRKAAWRLLPL TAAGLGTAVTHRTKADQARRRVEAHLDEYGWITNKTIRNMFDLDVQQARQLLADLRDAGV VMKDPAGPERGPTVRWLVAKKSRRRR >gi|289556262|gb|ADCD01000103.1| GENE 31 37969 - 38517 399 182 aa, chain - ## HITS:1 COG:no KEGG:Mlut_00970 NR:ns ## KEGG: Mlut_00970 # Name: not_defined # Def: protein of unknown function DUF88 # Organism: M.luteus # Pathway: not_defined # 1 182 1 182 182 351 100.0 8e-96 MSERTTYLLIDGENIDATLGTSILQRRPQPDERPRWKRLLGYLEDRWDQPVKGLFFLAID GEIPIPFVQALTALGFQPIMLRGEGKVVDIGIQRTAEALLGREDDVVLVSHDADFAPQLT DLAATPGRRTGIMGFEEFLSHELRRIPGVEFFDLEHAVGAFDSSLPRLRVIDVEAFDPYE FL >gi|289556262|gb|ADCD01000103.1| GENE 32 38551 - 39546 743 331 aa, chain - ## HITS:1 COG:no KEGG:Mlut_00980 NR:ns ## KEGG: Mlut_00980 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 331 33 363 363 407 94.0 1e-112 MMVAHTAPTGGPGGVLHLSEHLTAPLFAALVGVGARLEAEWLGRGRAVPRALVRAAALFG AVWLTGHFGAAVVNVLAHLAVLTVLMALLAALPLGAHLVLALLSGGGGLLLAATPTADVV DRLLPAAQALGLSRATLTPWVSAFLTDGPYRLPLFLAWALLGAVLVAAVHGTTTAAPARS ARLTGLGWAAGGIALAGVVLALSRTQTGAAPVPYTATPAEALLDTGLVLAVLGACAALMP RRAGLLAVPGAMTLSVYVAHLWYLGWVLRLGPGPWRSATGTDDTWFNLAVLVAGALLLPL LWRAVVRIGPFRAGPLEGVVRLLTAPFGRGR >gi|289556262|gb|ADCD01000103.1| GENE 33 39665 - 41218 1396 517 aa, chain - ## HITS:1 COG:YPO1309 KEGG:ns NR:ns ## COG: YPO1309 COG0833 # Protein_GI_number: 16121591 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Yersinia pestis # 44 517 17 492 503 596 61.0 1e-170 MPRRSTRVRPLSHRKATVDTSAPRTSPSTPPASAAHSTPEGGSLRRTLKSRHLTMIAMGG AIGTGLFVASGNTIATAGPGGALVAYVAIGFMVFLLMQSLGEMSTYLPVSGAFEEYSTRF VSPSFGFAIGWNYWYNWAITVAAELVAAALIMRYWLPDVPSWIWSATFLALLFGLNALST RAYGESEFWFSLIKVATVVIFLVLGVLMIVGILGGSSPGFHNWTDGEAPFVGGGAGILAI FMVAGFSFQGTELVGVAAGEAEDPEKNVPKAIRTVFVRILLFYVGAITVVGFLIPYTSPH LLGSDVEDISISPFTLVFENAGVLAAASVMNAVILTAILSAGNSGLYASTRMLWALADSG KAPRFLAKVNRRGVPMNALYATTVVGAACFLTTFVGDGAAYVWLVSASGLAGFIVWMGIA WSHYRFRRAYVAQGHDPKDLPYRAFLFPLGPIVALVMCAVVILGQNYQAFMGDVDLVAVA TAYIGLPLFLALWLGHKLVTGSKPVRYEDADLTRVLD >gi|289556262|gb|ADCD01000103.1| GENE 34 41268 - 42341 1051 357 aa, chain - ## HITS:1 COG:RSc0808 KEGG:ns NR:ns ## COG: RSc0808 COG2008 # Protein_GI_number: 17545527 # Func_class: E Amino acid transport and metabolism # Function: Threonine aldolase # Organism: Ralstonia solanacearum # 12 357 4 345 345 247 46.0 2e-65 MQRIHDPQERGFASDNYSGVHPEVLAALAEANGGHQVAYGEDVYTARLQEVVAQHFGKDA TAWPMFNGTGANVVGLQAMLPRWGAVICADTAHIHVDEGGAPEKSAGIKLLPVATDDGKL TPELIAAEAWGWGDEHRAQPLVVYLTQSTELGTVYTPDEVKAITDYAHEHGMRVYMDGAR IANAAASLGLPLRAFTTDVGVDVLSLGGTKNGALLAEAVVVLDPDAADGLVYLRKNQMQL ASKMRFVSAQLLALFDGDLYLRSARHANAMAARLRAGIEAGVADGSLAGVELTQATDANA VFAVLPEGVADRLRARFRFYDWDAARREVRWVCGFDTTEEDVDAFTAALRAELAPAA >gi|289556262|gb|ADCD01000103.1| GENE 35 42347 - 43021 402 224 aa, chain - ## HITS:1 COG:no KEGG:Mlut_01010 NR:ns ## KEGG: Mlut_01010 # Name: not_defined # Def: short-chain alcohol dehydrogenase # Organism: M.luteus # Pathway: not_defined # 1 224 1 224 224 266 94.0 4e-70 MAALTDRAVLIAGATSDSGRAATRTLLDAGAHVVATGRDAAKLAPLAALGAVTATLDLTD ETAVRGLVEDLHARGTRIDGLLHLVGGWRGGGGLAGQTEEDYRALEASFTALRHVSRALD GDLRASSAGRLAIVSSTAVTRPLAGGANYAAVKAASEAWTRAVAQGWAKAARDAEAPLRS AAVVFRVKSLAGLEERLAEEYARLWEAEAGVLNDAVLTLQEKGT >gi|289556262|gb|ADCD01000103.1| GENE 36 43025 - 44524 1377 499 aa, chain - ## HITS:1 COG:no KEGG:Mlut_01020 NR:ns ## KEGG: Mlut_01020 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 24 499 1 476 476 920 98.0 0 METFRQVIRVTGYFPALRPQEGSMSTTLQPARTDGVVPEAPADARTVETHPAWLRLKAAA TALHPLQVKDGSIPDPADHAAAREHVETIVAAVEELAPLFPHDAAYLAALPRDFARWADG GFAEPDFLDSLVAFQPQEHRVDGVRHLVVFPMYTQNGSPDRHVEALVVETIWPEFIAELE AGDYGNRLFLSLRLIDFTPGYDTNSAVLFPETVAMREIPTFTWGAIFQDREAARFRRVVT AAAEVTQLELPAELAELLSSQELAEGTFVMWDLIHDRTHMRGDLPFDPFMIKQRMPFFLY TLEEMRCDMTAFRECVAIERRLTARAAAGEQLTGLEEQTRRHAGLVQHAVLFDRVFRFAL TGSRVRNYDGLGGQLLFAWLHRKDVIQWRDVELSVDWDRLADAVVELGDAIDTLYWESID RPKTVHWLQAYELVASVVTPHPASVWAQGLPREVLAGPPKGYTDLVLDDEFPLSMFFEAL EKKMRGVIESTAGIRGTDA >gi|289556262|gb|ADCD01000103.1| GENE 37 44579 - 45037 339 152 aa, chain + ## HITS:1 COG:MT3390 KEGG:ns NR:ns ## COG: MT3390 COG1522 # Protein_GI_number: 15842882 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Mycobacterium tuberculosis CDC1551 # 3 143 6 146 150 139 56.0 1e-33 MDDPVDARLAAAVSHDPRATLAQLSERVGLSTSAVQARLRRLESTGVIRGYRALLDPEAV GRPLSAFIEISPLDPRQPDDAPELLESIAAIEACHSVAGDAAYMLFVRVGSPRELEALVT EIRQRASVSTRTTVVLQTFYEHRPMLELPAED >gi|289556262|gb|ADCD01000103.1| GENE 38 45079 - 46008 614 309 aa, chain + ## HITS:1 COG:Rv0317c KEGG:ns NR:ns ## COG: Rv0317c COG0584 # Protein_GI_number: 15607458 # Func_class: C Energy production and conversion # Function: Glycerophosphoryl diester phosphodiesterase # Organism: Mycobacterium tuberculosis H37Rv # 50 306 5 253 256 148 40.0 1e-35 MRADLTLIPTSRVPGRGSGALTARPRYRDPVRPTSPRPAPAYLTDSVPARRGHPLGFAHR GAAVDRENSLAAFVDAHAAGFTYLELDVRTTADGELVVFHDDTLDRVSTGRGRLRDHTWE RLADVTVGGEPLLRFTELLTALPGARLNVDLKDRASAPALARILAEHGAWDRVLVASFHD SRRRLFRRALARLGHPERAYGPERVATSGGAAAIAALVTLGPLGLTRWLRRYALDVDCVQ VPVRHGRVPVATPDFVRRCHAAGLPVHVWVVDEPAEIERLLDLGVDGIMTDRADVLAEVY ARRGLWPQR >gi|289556262|gb|ADCD01000103.1| GENE 39 46020 - 47516 1263 498 aa, chain - ## HITS:1 COG:alr3672 KEGG:ns NR:ns ## COG: alr3672 COG1012 # Protein_GI_number: 17231164 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Nostoc sp. PCC 7120 # 61 498 31 459 460 373 42.0 1e-103 MSTQPPGLTTDAPDDDPVREPLPTEALPIAPAGPRPEEPRAAVERLRAAARSRAAHPRTV RVRQLKGLKRMLTEHEGRFVAALGTDLGKPATEALITEIVSVRSEVDHALLHLTDWMEPR PVKLPLALRPASAEVRPRPKGLVLVIGAWNYPVQLTLAPLVGALAAGNTVVLSPSEKAPA TAAALRELVPQYLDSALVSVVAGGKECNTALLAEPWDHILYTGGERVGRIVYEAAAKTLS PVTLELGGKSPAVVTPSRNTGAMARRIAWAKFTNAGQTCVAPDYVLAVGEAALRQVTAEL PAALREFYGDDPRASKDYGRLISAEHTERLREMLQADLDAGAELLVGGDVDAAGRYMAPT VVTGVKPDGALMQEELFGPVLPVLTVDTFQDALDFIAERPHPLAAYLFTDRPSYHRAFDD QVQAGGLGYDVGLLHAGIATLPFGGIGASGMGAYHGIHGFETFSHLRPSITKSDQVDTLK TAYPPYGRMKRALLPKML >gi|289556262|gb|ADCD01000103.1| GENE 40 47713 - 49431 1535 572 aa, chain - ## HITS:1 COG:Cgl2489 KEGG:ns NR:ns ## COG: Cgl2489 COG0033 # Protein_GI_number: 19553739 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoglucomutase # Organism: Corynebacterium glutamicum # 10 572 2 553 554 679 65.0 0 MTENTAALPAAERPGTPALPQDLIDVDALLEAYRTGHPDPTDPAQKVVFGTSGHRGSAFT TSFNDDHIAAITQAVVEYRAHHGITGPVLVGKDTHALSGPAQDTAVEVLLGNDVEVLVDS RGGYTPTPAVSHAILHLNAGRELSPSGFAVDGDNAGLVDGLVITPSHNPPADGGFKYNPP HGGPADTEATTWIADRANELLAGGLAGVHRVASDDVAGHAKLGGFDFLDRYVSDLPQVID VEAIREAGVRIGADPMGGASVAYWGEIADRHGLDLTVVNPEVDPRFGFMTLDWDGKIRMD CSSPNAMASLIERMTPDADGQVPFDVATGNDADADRHGIVTPDGGLMNPNHYLAVAIDYL YRHREQWPQSAGVGKTLVSSSMIDRVAGDLGRELVEVPVGFKWFVPGLLTGTGVFGGEES AGAAFVQFDGSPWSTDKDGLLLCLLAAEIIAVTGQSPSERYRDLVALHGDPAYARIDAPA TAEQKAKLKTLSPDDVPVTELAGETILATLTNAPGNDAPIGGLKVVTQHAWFAARPSGTE DVYKIYAESFRGPEHLTQVQAEAQKLVDAVIG >gi|289556262|gb|ADCD01000103.1| GENE 41 49499 - 49927 294 142 aa, chain - ## HITS:1 COG:MT1960 KEGG:ns NR:ns ## COG: MT1960 COG0735 # Protein_GI_number: 15841381 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+/Zn2+ uptake regulation proteins # Organism: Mycobacterium tuberculosis CDC1551 # 1 140 1 140 150 162 60.0 1e-40 METTTRDEDERTLLRGVGLRVTRPRLAVLTALADHPHADASTVLAAVRRALPGTSHQAVY DCLHALTEAGLVRSLQPAGSPARYEICTGDNHHHLVCRGCGTVVDVPCRTGSAPCLDAPE DHGFAVDEAEVYYWGLCAGCRE >gi|289556262|gb|ADCD01000103.1| GENE 42 50089 - 51207 894 372 aa, chain + ## HITS:1 COG:no KEGG:Mlut_01080 NR:ns ## KEGG: Mlut_01080 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 372 1 372 372 535 97.0 1e-150 MAQPEPVRLVPGGAVDRPAEQALLTAAAACDGDVDAMVELLRAASGAPSDEDAAPLDLPL TGAGRTREQWELLASVAAQDLSAARVLEPHLDALSILSQAGVPAPAGLLGVYASESGGRT PALRPAPGGADTAWLLDGEKPWCSLADRCAAAVVTGREADGTRRAVLVDLSHPGVAETDS AWPALGLAPIRTVGLAFDAVPGSAVGGAEWYLRRPGFAWGGIGVAAVWFGGAVGIARTLR NATAARAAAQAEGRGPGPDQIGQAALGRVDRLLHAMAALLARAADDVDAGRLDHGRGMVE ADRIRGTVAQLCTEVMDVVGQATGPGPLTGSAAHARAVADLQVYLRQHHGHRDDARLGAA LLTGETEGGWTW >gi|289556262|gb|ADCD01000103.1| GENE 43 51204 - 53327 1636 707 aa, chain + ## HITS:1 COG:DRA0130 KEGG:ns NR:ns ## COG: DRA0130 COG0500 # Protein_GI_number: 15807799 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Deinococcus radiodurans # 277 431 8 160 198 123 47.0 1e-27 MSFSHTDDGTSEAAWVEGGVGELPELRLPVWDAETLLLVAVAHPDDETLAATGLIRSALR GGARVHVLVATAGEASHPHSPTHTPADLVRLRRDEMEHALDALAAGLPASAGPGSPARDR LTWASLALPDSGVAEHEDAVRDAVAAALDAHPGPAVLASHDPGDGHADHEAVGRAVGALA GECDLPLYAFPIWFWHWADPADLPARRYRRLPLTEDDRAARRAALDAHASQVRPLSAAPG DEAILGPAVLAHHERPFEAHRVSGPDDADAHRAAAVFDRLYRAHEDPWRYLSSPYEARKR ALTLAALPRPRYGTVVEAGASIGVLTAAVASRADRVVGLEASDIAVERAAARLADAPHAE VRRAVLPADWPADVAGADLVIASEIGYFLQPEELDALIDDADAALAPGGELLLCHWRHPI EGWPLDGDAVHARVAADPRWRLRTELVEDDFRLSLHVRAAAATHAVVVVPAKDEQERLPA ALAALTAALDRWEEHHAQGTAAVVVAADRCDDATVAAALEARAADPRIHVLELGEPTAGQ AGVGRARVEGARRARALFPDVPAERLWLASTDADSRVPADWLLAQTVAAGRDEVLVLGTV DVRQGPLRQAWLRGYRHEEGHPHVHGANLGLPWSLYEAVGGFPPVAEHEDVGLAEAVRAL AGERDGGDGRRVRVIATDTTRVLTSSRLEGRTPGGFSGYLKTVGRPG >gi|289556262|gb|ADCD01000103.1| GENE 44 53426 - 53983 462 185 aa, chain + ## HITS:1 COG:no KEGG:Mlut_01100 NR:ns ## KEGG: Mlut_01100 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 185 1 189 189 244 91.0 1e-63 MTDPHASHDPRREGARPSWYGSEAGAGSSSTGSSAAGWPGDADRAAWDQAPSYAEQEEQT RPAYGQPYGYGQDATTVPAYGYGQGAPGYGFGAPLQPGQTEGIGRSVASMILGIISVVGG FTFLLPPIVGVVLGHLGLKREPHGRGMAIAGLVMNYVSLALLLLAVVFLVILVIAGMSVS DYTST >gi|289556262|gb|ADCD01000103.1| GENE 45 53993 - 55534 1270 513 aa, chain - ## HITS:1 COG:MT1301 KEGG:ns NR:ns ## COG: MT1301 COG0154 # Protein_GI_number: 15840709 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases # Organism: Mycobacterium tuberculosis CDC1551 # 112 508 66 449 462 151 38.0 3e-36 MTRATPVRLGRMQTSDAAPAADDDRTPSAPGPARLLDRSAVRLREDLAAGELSAREVTEA ALAAAQAHADLGAFALLDAEGARTRATELDAAHPRVAPRAVPGPRTSPAPDDDGAPASLH GLPLAYKDLIDVRGMPTRFGSALLADAPPAAQDDPLALRLRAAGTVTLGKTTVPEFGLDS YSENLVTAPARNPLDPTRTAGGSSGGAAVAVAAGILPFAPGSDGGGSIRIPAAACGLVGL KPGRGELPMDEHADTVRNLTVSGPLAHTVEDAALLYDVMLTPEGLPGRVLPDLRRTVETA RAGDAVDARRIGVTTASPFAPDLEISLARPALTALTKAAAALDAGGHAVEDLSPHYGEDY HRDFRTVWTAGLLRAPLPEDAEAHVGAVAAHFLRTDRAAGRAEIDDAAHRLEEWARGVRA QFAAVDVVMTPVLATAPPPVGHFLAMEPEANYEAQCAFTPYTSMVNVLGLPAVAVPVLRD ERGLNWSVQLIGRPGTSAPLLALAAHLELLLAG >gi|289556262|gb|ADCD01000103.1| GENE 46 55585 - 55911 330 108 aa, chain + ## HITS:1 COG:Cgl2653 KEGG:ns NR:ns ## COG: Cgl2653 COG0607 # Protein_GI_number: 19553903 # Func_class: P Inorganic ion transport and metabolism # Function: Rhodanese-related sulfurtransferase # Organism: Corynebacterium glutamicum # 7 99 4 96 96 95 52.0 2e-20 MSAFETVDVNEIPADATILDVREDDEWALGRAAGAQHIPLGQLPDRLEELDPDTDYYLIC RTGGRSARAAEFMTGRGYSAINVAGGSGAWLEAGKPMEADGDAEPTVK >gi|289556262|gb|ADCD01000103.1| GENE 47 55908 - 56858 547 316 aa, chain + ## HITS:1 COG:MT3946 KEGG:ns NR:ns ## COG: MT3946 COG0077 # Protein_GI_number: 15843462 # Func_class: E Amino acid transport and metabolism # Function: Prephenate dehydratase # Organism: Mycobacterium tuberculosis CDC1551 # 14 315 2 304 321 188 42.0 1e-47 MTGTGSADATPSRLRYAFLGPAGTFTEAALRKVADPAEAEFVSAGSVLSAVAALRRGEVD RAVVPIENSVEGGVSATVDEIALGETLQILAEVHVPISFVLVGRPGVAIEDVRRVTTHPH AWAQVRGWAETALPGVDFTPAPSTAAGAGLVAHGDFDAAVCAPLVAEQTGLPVLAERIED VPGAVTRFVLLSRPTALPAPTGADKTTLVVPLPEDRPGALGQILAEFTTRGVNLSRIESR PTGEGIGRYFFSLDLEGHLAEARVGDALAALYREYPDLRFLGSYAQAEPVPTRVPAEFTD AAYRSGRAWVESLRSR >gi|289556262|gb|ADCD01000103.1| GENE 48 57142 - 58320 1046 392 aa, chain - ## HITS:1 COG:DR1363 KEGG:ns NR:ns ## COG: DR1363 COG1597 # Protein_GI_number: 15806380 # Func_class: I Lipid transport and metabolism; R General function prediction only # Function: Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase # Organism: Deinococcus radiodurans # 125 365 64 301 311 102 32.0 2e-21 MTPEWWMALAALVLLAVLTVVVVVLAVRQVRLGVQHERTRLLVDALDARVGGVQRRLEKV PGIGTGRHEVALVLNPIKTNAGQVRRELERLAAAEGLGEVLVLETQEDDPGTAMARQALD AGARLVIAAGGDGTVRTVAEQLAGTDVALGVVPLGTGNLLARNLDLPINDVEQCLRIAVG GRQRRIDTVDVRFTHEDGSVTRQTFTVIGGAGYDADIMGDTKDELKDLAGWLAYSEAGMR HLRGKRHEVTVALDGSLPRRFKVRTVMVANCGMLTGGVELLPQAKLDDGLLDVMVLSPRH ALDWARIAVKTVTRSRSSIPVMHTEQAQRVKVEFAEPMPSQLDGDATGVITTLDARVQPD SLVVMLVAEDDASVRADGVSAATPVPEPAPHI >gi|289556262|gb|ADCD01000103.1| GENE 49 58364 - 59647 1115 427 aa, chain + ## HITS:1 COG:Cgl2831 KEGG:ns NR:ns ## COG: Cgl2831 COG0172 # Protein_GI_number: 19554081 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Seryl-tRNA synthetase # Organism: Corynebacterium glutamicum # 1 419 11 421 432 493 63.0 1e-139 MIDVKDLIEQPEKYRASQEARGEDASLVDRVVEADAARRSSIAGFEQLRAEQKAFGKRVA QAKGEEKQALLAEVKDLAARVKEAESAAGAAEARLAELQRAFPNLIVDGVPAGGEDDFVV LKEVGTPRDFAAEGFEPRDHLELGELLGAIDMERGAKVSGARFSFLKGVGARLELALMQL GLDLALENGFVPVIPPTLVRPETMQGTGFDVEHDDEIYRLERDDLYLVGTSEVALAGYHA DEIMDVSAPVRYAGWSTCYRREAGSAGKDTRGIIRVHQFNKLEMFIYAAQEDAEAEHERL LAWEERMLGAIEVPYRVIDIAAGDLGLSAARKFDCEAWVPTQGTYRELTSTSNCTTFQAR RLNIRERVRTEDGSKGGTRMVATLNGTLATTRWIVAILENHQNADGSVTVPAALRPYLGG MERFELV >gi|289556262|gb|ADCD01000103.1| GENE 50 59762 - 60571 739 269 aa, chain + ## HITS:1 COG:DR0240 KEGG:ns NR:ns ## COG: DR0240 COG0561 # Protein_GI_number: 15805275 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Deinococcus radiodurans # 1 263 13 280 284 103 34.0 4e-22 MTKKLVCLDVDGTIVDHDGHLHEPVRAAVRAVLDAGHHVVIATGRSRGATLPVARSLGIG AGYMVCSNGGVTLRLDPELEEGYEVTDLRTFDPRSVLTQLRHRLPSAKYALELPDGTFRS TERFQDMSFGVAAEGVTFEELMDTTAVRLVVFSTDSSAEEFGRAVEGIGLSGVTYSVGWT AWLDVAAAGVTKASGLEALRTVLKVAPEDTVAVGDGRNDIEMLRWAGRGVAMGQAVEEVV AAADEVTGHVDEHGLATVLRSLLEEPAAV >gi|289556262|gb|ADCD01000103.1| GENE 51 60599 - 61228 498 209 aa, chain - ## HITS:1 COG:no KEGG:Mlut_01170 NR:ns ## KEGG: Mlut_01170 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 209 1 209 209 303 97.0 2e-81 MFVLTINQRDTLDAGDRVDTFLRALQDVPGLGDAVALPFQRAVGDELIGAVEDPRVAVDV ALRALRQRRWNVGVGVGTVTHADGAAGAPASGDLHDAGGPGLAAARRAVEAAAVSTARIP LAVRGRDEEAAAEAEAVLRLVGQLVWSRTDAEWAVLDLLVPGVRGQQKPAAAALGITAQA VSQAVQRSYWNEEHACRPAAARLLTLAGG >gi|289556262|gb|ADCD01000103.1| GENE 52 61318 - 61905 609 195 aa, chain - ## HITS:1 COG:ML0210 KEGG:ns NR:ns ## COG: ML0210 COG0221 # Protein_GI_number: 15827013 # Func_class: C Energy production and conversion # Function: Inorganic pyrophosphatase # Organism: Mycobacterium leprae # 1 161 1 161 162 184 61.0 6e-47 MAHDVTIEIPAGSRVKYEFDHETGRLRLDRVLFTSMQYPTHYGYFENTLGEDGDPLDALV YLPGFDLVPGCVVEARPIGVFNMTDDGGGDAKLLCVPADKRYDHITELEHVEESLKQEIE HFFTRYKDLEPGKWVKAEGWEGRAAAEAELEASIQRFNAEGDESPTDEPQGREVDTEEAQ PATEKGEETDEPQGR >gi|289556262|gb|ADCD01000103.1| GENE 53 61886 - 63436 896 516 aa, chain + ## HITS:1 COG:Cgl2643 KEGG:ns NR:ns ## COG: Cgl2643 COG2027 # Protein_GI_number: 19553893 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) # Organism: Corynebacterium glutamicum # 126 511 80 422 427 110 30.0 8e-24 MVTSCAMTLLRTEGGVSGRRGADRRCCRQPTGGVRHDGRMGQVDTGRAGRRDRRTERPRS RSLPAALLAAFAAVLVACGPVTAPPAPSSAPASSTTAGPTSSSPSTGPTAAEVAAAVEPG LAGSPGTVSAEFRDLATGEVLYARDADEPVAPASSLKVLAAAAIVSALGPETTLQTTVVA QPTADGAATELVLVGGGDVLLGTGASDSTHVSGRAGLRTLAERTVAGLVEDGVTGQVVVS TDLRLFADRTALNPRWTSDIPESGNIAPVQPLATYGGREVPGTGEDRIAAPAQFAALTFQ AALDDAVAASGADLEVGLRDTIPATEVPRATVLAAAPVAAVESAPVGEQVAYLLAHSENQ VAEALAHTAAPAAELPATHEGATQLLTATAEDLGVDTAGMALVDSSGLSPDNRVSAGQLA DVVAGVARTPALATVLEGLPRPGEDSTLGDRFPDAPARQAVAAKTGTLDQTVSLTGTVTT TSGRVLAFSIICSDLQWKLEPARAAVDEAVSAVAGL >gi|289556262|gb|ADCD01000103.1| GENE 54 63462 - 64679 973 405 aa, chain + ## HITS:1 COG:MT3728 KEGG:ns NR:ns ## COG: MT3728 COG5282 # Protein_GI_number: 15843238 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Mycobacterium tuberculosis CDC1551 # 27 401 20 356 357 192 39.0 1e-48 MEPMSDDHATDRPRAADAEPGATAHPVDWAFAARTARSLAAAGPRFTPREATREAEGLRA AAEAAVPHVHRLTGLEAARDLRDSQVLVVDRPTWSRAATQSFATLLDPTFAHLRDTRPRE HAAATTRVTRHATALEMGGILAWMSGRILGQYDPFIALPGPGGTAGGPPGGRLLLVAPNV AQVRAEINVDPADFRLWVCLHEQTHRVQFAAAPWLREHLRAEITALTVGLFDKAESLPER LRSALAAANPLGREADAGRTGTRDGHDAQDAAPARPAPGLLGVIQDEEDRERLSRLTAVM SLLEGHANVVMDGVDSSVVSSVKTIRRRFDERGDRRSPLDRMLRRVLGMDAKMAQYRDGQ RFVAAAVAELGMAGFNVVWDAPELLPSEAELHAPETWVARIRAQA >gi|289556262|gb|ADCD01000103.1| GENE 55 64792 - 65844 568 350 aa, chain + ## HITS:1 COG:ML0213 KEGG:ns NR:ns ## COG: ML0213 COG0037 # Protein_GI_number: 15827015 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Predicted ATPase of the PP-loop superfamily implicated in cell cycle control # Organism: Mycobacterium leprae # 28 323 30 297 323 122 41.0 9e-28 MREALAGDGSCRADAGPGRAGNRPRGLVALSGGADSLALAVACAVLVGTRDGARLGPIGA AVVDHGLQSGSDAVAAAAADVARILGLAPVTVTRVEVARTGDGPEADARRARRVALAAAA RDARPGGAVVLTAHTADDQAEQVLLGLARGSGTRSLAGIPARGTLPGGAAVVRPLLGLAR ADTEAICRWAGLTWFEDPHNRDPALLRSRVRTRVLPALEDPDVGLGPGVRAGLVRTAAIA AEDAAALEAWAGDEFPRLRVDAPGRDPRVVSLDLDALAALPAAVRHRVIARAARAAGGQA PPRERILAVDTLVAGARAGGTSAGPVELPGGVAAHRACARLDLIPRLPGP >gi|289556262|gb|ADCD01000103.1| GENE 56 65894 - 66445 585 183 aa, chain + ## HITS:1 COG:Rv3624c KEGG:ns NR:ns ## COG: Rv3624c COG0634 # Protein_GI_number: 15610760 # Func_class: F Nucleotide transport and metabolism # Function: Hypoxanthine-guanine phosphoribosyltransferase # Organism: Mycobacterium tuberculosis H37Rv # 9 182 36 215 216 182 58.0 3e-46 MDAQDVQNDLTHVLMSREDVQDTITDLARQIDRDYADKDLLIVAVLKGAVMVVADLTRAL HSHVELDFMAVSSYGSGTKSSGVVRILKDLDADLTGRHVLIVEDIIDSGLTLSWLKANLE SRGPASVEICTLLRKPEAMKVDIDVKYVGRDIPNEFVVGYGLDYAEKYRNLDFVGTLAPH VYS >gi|289556262|gb|ADCD01000103.1| GENE 57 66481 - 67545 673 354 aa, chain - ## HITS:1 COG:no KEGG:Mlut_01230 NR:ns ## KEGG: Mlut_01230 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 353 1 354 355 503 92.0 1e-141 MRRPAPLPAALPDGPFTAAQARAAGIDRNRLRRSDVERLARGLYRRREAAPAAVEHPVAG SSPYRWSTPLSTAQRELLLRLAPHRTTTVVSHQTAARAREIWLPERLDAGDGVHVSRPRD RGQLSLPGVTSHRTALPPADVEGVRIGGLAWYVTAPPRLWVDLAALLDDDELVILGDHLV RRAELSGGPGAAERTRAALAQAAETSPSAHNRRRRLRTAATLVRVGAHSPKETRLRLALT AAGLPEPALQLEVWDPEFSLHHPATADLGYRRARVALHYDGGHHGADRQIDRDVQRNAAF ARRGYRNITVSSSDARRGFTRVIVEVRRHLGDAGDLPRRESEWGGDPAPERHHA >gi|289556262|gb|ADCD01000103.1| GENE 58 67544 - 67795 65 83 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MVPAWRGGVGGVLGRRRPGEEFGCTGVCAGGDAGARPQRRRPVTRAVALRHDPRAIPTAR IPGGRQGGAGRRRRRLTARALST >gi|289556262|gb|ADCD01000103.1| GENE 59 68039 - 70030 1306 663 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 [Rickettsia canadensis str. McKiel] # 77 569 100 590 636 507 55 1e-143 MVDTNVGMALLKDDKAAQARVVDGDQRVDLTLREPYKQDDRDLGKEVYFYFASARATDVV TAVDDSALDGYTDEPVRSNWFLSLLGFMVPFLLIALLFWFLMSRMQGGGGKVMQFGKSRA KLINKDNPDVLFKDVAGADEAVEELQEIKEFLTVPDRFRAVGAKIPKGVLLYGPPGTGKT LLAKAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKSNAPAIIFVDEIDAVGRH RGAGIGGGNDEREQTLNQMLVEMDGFDASTNVIMIAATNRPDVLDPALLRPGRFDRQIPV DAPDLEGRAKILEVHAQGKPIALDVDLRALAKRTPGYTGADLANVINEAALLTARSNNNV IDNHALDEAVDRVMAGPQKRTRLMNEHERKVTAYHEGGHALVAAGLRNSAPVTKITILPR GRALGYTMVVPEDDKYSVTRNELLDQLAYAMGGRVAEEIVFKDPSTGAANDIQKATDTAR KMVTEYGMSAKVGAVKLGGGSSEPFMGGAGGGSSREYSEELAYLVDAEVRALLDQAHAEA HWVLTENRDVLDRLAYELLEKETLTQEAIAAIFADVRKRPERGVWLASDDRLPQDIPPVL SPSERRSRHDGGDQTPVGVEGTTVPVRPEGAPPSSLGGDAAGPGLPPHGGPSNTPGPGEG PTF >gi|289556262|gb|ADCD01000103.1| GENE 60 70048 - 70668 605 206 aa, chain + ## HITS:1 COG:ML0223 KEGG:ns NR:ns ## COG: ML0223 COG0302 # Protein_GI_number: 15827020 # Func_class: H Coenzyme transport and metabolism # Function: GTP cyclohydrolase I # Organism: Mycobacterium leprae # 7 204 5 203 205 254 65.0 7e-68 MTAHTPDDAVPGTFDPDSTAVDRPRIEAAVREILLAIGEDPDREGLTDTPARVAKAYAEF FAGLHQSPDQVLGTTFDIAHEELVLVKDIPFYSTCEHHLVPFHGAAHIGYIPSAEGRVTG LSKLARLVELYARRPQVQERLTTQVVEALMEHLAPRGAIVVVEAEHMCMSMRGVRKPGAK TVTSAVRGQLRDPSTRSEAMSLIMHG >gi|289556262|gb|ADCD01000103.1| GENE 61 70776 - 71609 677 277 aa, chain + ## HITS:1 COG:ML0224 KEGG:ns NR:ns ## COG: ML0224 COG0294 # Protein_GI_number: 15827021 # Func_class: H Coenzyme transport and metabolism # Function: Dihydropteroate synthase and related enzymes # Organism: Mycobacterium leprae # 1 274 9 283 284 218 51.0 1e-56 MGILNVTPDSFSDGGEHATVRAAVEHARRMVADGADIVDVGGESTRPGARAVPPAEEQER ILPVIEALLAEDVILSVDTRHTATARAALALGPVIVNDVSGLAHEPEMPALIAASGAPYI LMHNRGNPQTMDGLAVYEDTVPDVVCELRDVAGRFLAAGVEPAQLIVDPGLGFAKAGEQN WELLRGLEWLRAMGHPVLVAASRKRFLGTLLADDDGTPAPPAARDAATAAISALAAAQGA WGVRVHDVRASADAVRTAAAWVGAHAPGEPVSEDVLP >gi|289556262|gb|ADCD01000103.1| GENE 62 71606 - 71986 159 126 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148994682|ref|ZP_01823786.1| 50S ribosomal protein L13 [Streptococcus pneumoniae SP9-BS68] # 5 123 2 120 278 65 28 8e-24 MSARDRIRLTGLSAVGHHGVFDHERRDGQPFVTDVVLHLDAGPAAAGDDLARTANYAEVA DTVVRLVTGEPVDLIETLADRIARAVLAEQPVVAAVEVTVHKPQAPIPHDFADAAVTVHR TREDLA >gi|289556262|gb|ADCD01000103.1| GENE 63 71983 - 72627 376 214 aa, chain + ## HITS:1 COG:NMA0958 KEGG:ns NR:ns ## COG: NMA0958 COG0801 # Protein_GI_number: 15793915 # Func_class: H Coenzyme transport and metabolism # Function: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase # Organism: Neisseria meningitidis Z2491 # 29 153 7 130 164 102 49.0 6e-22 MSTVDWSHPAEGPAPVPELGARPDAPVPAVLALGANLREPAQTLDAAVAALSALPHITDV RASPRAVTAPVGGPPGQPDYLNQVVTLRTDLAPWELLAVAHRLEQDHHRRREVRWGARTL DVDVIAYGDVRSDHPDLTLPHPRAAERAFVLLPWLWLDADATLAGTPVADLAAVAADAPG VRRQEPERHRLLAGTDDVVPLRPARPDALGREAT >gi|289556262|gb|ADCD01000103.1| GENE 64 72360 - 75122 532 920 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MPGLPGVQVHGHVLVEVADHGLRPRDPHAHRGQTQASLHRALRQLGRLHALVLEGLQPAV QPAAAHHQQGPRRREAGPPPGEPVEPPPAAPRHVLEAPLRAGAVHAQVHEPGGGQPVRGA RITVQARVRGHDREDAEHVLPRADGQRDVPGAVGLLPVAGHRHVHPIPAEGPPEQGLGHG HPLHPPRRDGLVGGLGEPVPQPQPVGGAAHLEAPAGVQPGPRDAGHGEQGGQDRGRADTG QGLPLVQHRLGQQRDHDGETGQPDQGPGQHPQHASGEQDGAEEPPRGHLQQEFAGVRGVG VGEAGLGRPLRRGRVRPGSPEHPRRAVQDLPAHRFGLGAAQEGQLERGLAAVGRLDLHRG QPEQPGHERVLQVHRLDAVIAHLPATAEEPALAQLDPVLPAAEPGEPPGEEEHEADQQGD PQQDAAGHEQAAVTAARDVLPAEPARREVLHRVAAREEQDQQQEGPAPHPGRGGVDADPA GVVGGGRGGGAHRPASRAWPRAMRTSRSSSALSRGTPSRVTSPPAAAVFRVRVCSPARRS SGPSETSTYCRRPYGTAYTLRNRMPSRHSTSSSRSAQPIARTRRGIRIRSTTQDTTTTAG SPHAAHAAIPAHGPVSLRISGTENPASQIRWPMDVAMSFTVVSRGEAGVKATPLRSMPGT GIPSFGLRTGRSAAARGPILPTTALGRILLRGDPAPPFDDQPHHQQDEAADGLQGGLPHG RRPDTGPQQHLHRHPGVPAAEGRSREAGGLAEHEGAGRGERVHPRGGGLLPVAAHPPAQR EAQYGDRGHGDQAAAAHHGRRPAQGRRGEPGQPAEHGGRQHHEQGPPGAQRDHVASLPRA SGRAGRSGTTSSVPASSRCRSGSWRRTPGASAATAARSATGVPASVASASSHSHGSSTKA RSAARGCGRVRSGWSLRTSP >gi|289556262|gb|ADCD01000103.1| GENE 65 73647 - 75326 1133 559 aa, chain + ## HITS:1 COG:Cgl0622 KEGG:ns NR:ns ## COG: Cgl0622 COG3428 # Protein_GI_number: 19551872 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Corynebacterium glutamicum # 13 463 6 424 471 168 29.0 2e-41 MSAAAPPPADDAGWVRVHPASPWVRGWTFLLLILFFAGRNAVEDFAAGRLSGEDVPGGGD GSLLVAGGILLGVTLLISLVFFFSWWFTRFRCGEDRIELRQGWLFRSRRQMRYDRIQAVD LQHPLVARLLGLATVKVEAADGGESALELSFLRRAEAEAVRREILDRASGVLGGAGADAS APERAAEPGLPDADAADAGELLLQVPAGRLLGSVLLSGGVLGVLAGSLIWLAGLAVVVAL LPEAVLDEGETLTGVGAAAVLPALFSVAGVAWSRLNAGWGFQVRRSTDGLRLRHGLTETT HQTVPPGRVQGVTVSQSLFWRPFGWYRVNVAVAGYGQESDGARDVALPVGPWEDVLRVLT VVAPDPGLDGDPRAAHGLTPAGLMHLGVHGTGTEGGFQHVPRRGRWWFNWFAWRRTGFTT TRSLLVVRSGWLHRRLQTLQHERMQAAELAQGPVQRRLGLATVRVWVAGAKAVVRDLDED VAVDLYAREARHAAVSRRLADRDQWMRPEELARFEQRTREVAATEVGRRELARAGVGGGA VVGEESGADVSAVRGEEER >gi|289556262|gb|ADCD01000103.1| GENE 66 75323 - 76273 804 316 aa, chain + ## HITS:1 COG:Rv3603c KEGG:ns NR:ns ## COG: Rv3603c COG5495 # Protein_GI_number: 15610739 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Mycobacterium tuberculosis H37Rv # 17 250 8 257 303 177 48.0 3e-44 MTGGLDLSLDPHDPAQRPGRLGVGVVSAGRVGAVLGSALRAAGHTITGVHAVSEASRDRA EMLLPGVPVLEVPEILRRSEMVVFAVPDDALGELVTGLAAAGHVQTGHLLVHTSGRYGVG VMEPVRAHGAIPLAIHPAMTFTGLSLDVARLQDCVFGVTADPVVLPVAQALVVEMGGEPV VVKEADRAAYHLALSHGSNHLVTLTAQARQILETIGVADPERVLRSLMTAALENALTDGD GALTGPVARGDVDTLRTHRETLGELEAGGLSADVRAVWETLARATTDRAETRGTLRADTA ARLREVLDGSDDPHDD >gi|289556262|gb|ADCD01000103.1| GENE 67 76423 - 76899 396 158 aa, chain - ## HITS:1 COG:PA2978 KEGG:ns NR:ns ## COG: PA2978 COG0394 # Protein_GI_number: 15598174 # Func_class: T Signal transduction mechanisms # Function: Protein-tyrosine-phosphatase # Organism: Pseudomonas aeruginosa # 1 158 1 154 154 92 41.0 4e-19 MRIMTVCLGNICRSPAAEAVLNRKLTEAGLDDVEVTSAGTSGEHVGARPHHLTREVGGEL GYEFPTVGVQLSADLVDDADLILAMDEANLADARRLATTDEQRDRIHLMGEFASDADSAG VREVPDPYGYPRPQFEEMYRQIEDAADGVVAAIRDGRL >gi|289556262|gb|ADCD01000103.1| GENE 68 76868 - 77164 76 98 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFPRQTVMMRMGPVSQVWSGAADDDGPHARLVAGGTTSGASTRVAAGGAEASGGPSPGSW PFLERKRCDTPPFPERKRGRRRPFRRWLRRTRLAGWRP >gi|289556262|gb|ADCD01000103.1| GENE 69 77161 - 77610 439 149 aa, chain + ## HITS:1 COG:no KEGG:Mlut_01340 NR:ns ## KEGG: Mlut_01340 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 149 1 149 149 232 96.0 3e-60 MTDQPEMSPLTEPEREWVRVRRDFAAQEGVDHLDLDAVAAYYDAVLARSQAEADELDPEE LAVLLDVVAVLLGEHLGARHGMQWVTVADEEGPALALRDTLSDAVVFPQPVVGQSWNEQA TGEWMGGYVDWLGKQLQQIRADAGTRPGA >gi|289556262|gb|ADCD01000103.1| GENE 70 77706 - 79859 1790 717 aa, chain + ## HITS:1 COG:XF2260 KEGG:ns NR:ns ## COG: XF2260 COG1506 # Protein_GI_number: 15838851 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidyl aminopeptidases/acylaminoacyl-peptidases # Organism: Xylella fastidiosa 9a5c # 5 695 37 707 709 184 27.0 4e-46 MTSTPDTPATPFHDLDAFTALPRVAGLTLSPDGARLVTTVATRDAKGTGYATALWEVDPA GERPAHRLTRSREGEAGAQFAADGTLFFTSARPDPADAEAEKRSALWALPARGGEARVVL SRPGGVAAVTCASAADRVVVTADRLLGATTEAEHAALAQTRKDAGVDAILHTGYPIRFWD HDLGPARPELFVLEPGPDPQGEPATDADAAEPGPAASGLAPEADDASHHLRHVSGFPRSH AFGIGAQVAPDGSFLLTTAATAEARGNVREGTVVRVDLATGEHRVLHDVPGEDVSVGPVS HDGTRAVVVRTPDSTPHSAVHPRLYVMDTATGQTTPLAHGWDRWADVVAWLPDDSAVIAL ADSEGRRPVFRIEVATGAVAQVTREDEAWTDVVLSPDGATAYGVRSSYLFPPEVARIDLA TGEATRLPNPVERPAIPGTLEDVETVAEDGTRVRGWLVLPEGEAPAGGHPLLLWIHGGPL GSWNAWSWRWTPWIMAARGYAVLLPDPALSTGYGQDFIERGWGRWGQAPYTDLMALTDAV VAREDVDGDRTAAMGGSFGGYMANWVAGHTDRFRCVVTHASLWALDGFGPTTDAAFYWAR EMDEQMQQENSPHRFVGEIVSPMLVIHGDKDYRVPIGEGLRLWSDLLAKSGRPAASDGTT DHRFLYFPHENHWILAPQHAKVWYEVVLGFLGEHVLGDGAPSAPETLGLTRPSSTEG >gi|289556262|gb|ADCD01000103.1| GENE 71 80030 - 81256 1285 408 aa, chain + ## HITS:1 COG:PA0347 KEGG:ns NR:ns ## COG: PA0347 COG0584 # Protein_GI_number: 15595544 # Func_class: C Energy production and conversion # Function: Glycerophosphoryl diester phosphodiesterase # Organism: Pseudomonas aeruginosa # 53 380 55 378 383 308 51.0 1e-83 MTSVRRHAARGLVALAVAVAVSAPLAAPAVAAPAATETPAAAQSVTGKPVVRPDVVGHRG ASGYRPEHTLAAYELAAAQGADVIEPDLVSTKDGVLVVRHENLIDGTTDIAQRPEFADRK TTKVVDGVALTGWFTEDFTLAELKTLRAKERLPQVRPESASYDGRYQVPTFEEVLELRER LSARYGREIGVIPEIKHPTYFDSIGLSMEERVVELLDEHGLNKRNAPATVQSFELANLRD LNENLGLKAETVFLSSVNGAPYDSVAAGDTARDYDFYETAAGMREVRAAGVDTLGPAFAQ IITKEKDGSMGEETAFVSLAHRAGLEVVPYTFRAENQFLYTEFRSSTDRNAQGDMVGMIQ PFLDAGIDGFFTDHPDLGVQAVDVWMQGKKEHPGRGVGKTAQRGLKAR >gi|289556262|gb|ADCD01000103.1| GENE 72 81470 - 81950 411 160 aa, chain + ## HITS:1 COG:no KEGG:Mlut_01410 NR:ns ## KEGG: Mlut_01410 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 160 1 160 271 195 96.0 5e-49 MTTNTPQNAHGSSAEGRDAKDQAKDKAQQAAGEAQGQAKAVAHDAKDKAQDLAATAKHEA GQVKDEAADQVQSLVGSAQEQVGAQVQTQQERLAGQVRSYTDDLHRVVSGEQPQTDLVRR GVASVADRAEALTQRLETASPQDLLQDVRGFAARRPGTFL Prediction of potential genes in microbial genomes Time: Thu May 26 08:26:15 2011 Seq name: gi|289556257|gb|ADCD01000104.1| Micrococcus luteus SK58 ctg1119142780289, whole genome shotgun sequence Length of sequence - 2685 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 2, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 192 - 617 270 ## Mlut_03890 hypothetical protein - Prom 769 - 828 80.3 + TRNA 749 - 825 83.6 # Pro CGG 0 0 - Term 818 - 856 13.0 2 2 Op 1 . - CDS 891 - 1253 314 ## COG2388 Predicted acetyltransferase 3 2 Op 2 . - CDS 1312 - 1809 364 ## COG2128 Uncharacterized conserved protein 4 2 Op 3 . - CDS 1902 - 2642 542 ## Mlut_03930 hypothetical protein Predicted protein(s) >gi|289556257|gb|ADCD01000104.1| GENE 1 192 - 617 270 141 aa, chain - ## HITS:1 COG:no KEGG:Mlut_03890 NR:ns ## KEGG: Mlut_03890 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 141 1 142 142 167 90.0 9e-41 MSWWPFPRPSASPSPDDDGATAAELEEAVAALRQLLRAERHRLRPDSWALAWEMVEHAAE YAPAWTRLQRIRPLETQELVLALTGRLEPLLRDFLALPDSDKPAHADAVHARLLEQGTEH GRLRRRLTRALTARLRAGEEL >gi|289556257|gb|ADCD01000104.1| GENE 2 891 - 1253 314 120 aa, chain - ## HITS:1 COG:DR1844 KEGG:ns NR:ns ## COG: DR1844 COG2388 # Protein_GI_number: 15806844 # Func_class: R General function prediction only # Function: Predicted acetyltransferase # Organism: Deinococcus radiodurans # 11 101 2 87 93 62 36.0 2e-10 MTEQTPSLEHPQVRKNAERYEIVVDEAGTVAGYTVAIDDDTGDGPTQRIFPHTKVDHGYE GRGLASTLVREALKDTVAAGRRIVPVCPYVKDWVNEHDDVAGDVDPAGPEHLQFLESRQD >gi|289556257|gb|ADCD01000104.1| GENE 3 1312 - 1809 364 165 aa, chain - ## HITS:1 COG:Cgl2318 KEGG:ns NR:ns ## COG: Cgl2318 COG2128 # Protein_GI_number: 19553568 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Corynebacterium glutamicum # 17 160 8 149 150 89 38.0 4e-18 MTAADTPAPRQDPLAFFLDKAVPEAWHAVGPLASAARGAAEQAGLDRQLVELVNLRVSQL NGCVFCLDRHTRQGADAGLSVQRLGLLPAWREAGAVYSEQERAALELAEAVTDLPEQEQL NYVQASTAAVLTDAQYAAVQWVAIVMNLTNRISILSHHPVRRRDG >gi|289556257|gb|ADCD01000104.1| GENE 4 1902 - 2642 542 246 aa, chain - ## HITS:1 COG:no KEGG:Mlut_03930 NR:ns ## KEGG: Mlut_03930 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 222 274 495 519 343 95.0 4e-93 MERFRGFRRQALDASAELDRLEALPERSLHRTEHARAAEDVRDRARELDRLDDAVAAANT FLNRHPGWPSAWDQQTAPLRADLDAVGTLASSVGSAGPVRSAVAALESFRAEAQGRLEAL GADLQDERLTPAAALDELDALRRRLTGLVSALADAEVAAFGKDEAERELLRDELRTHRGP ARSARGSILDSALPTDAYWTVVAFTTGHQAGERSVQDHRQAQSSSSGTGYGSSAGSFSGA GSSGRF Prediction of potential genes in microbial genomes Time: Thu May 26 08:26:22 2011 Seq name: gi|289556255|gb|ADCD01000105.1| Micrococcus luteus SK58 ctg1119142776939, whole genome shotgun sequence Length of sequence - 1162 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 1160 1727 ## COG3451 Type IV secretory pathway, VirB4 components Predicted protein(s) >gi|289556255|gb|ADCD01000105.1| GENE 1 2 - 1160 1727 386 aa, chain - ## HITS:1 COG:BMEII0028 KEGG:ns NR:ns ## COG: BMEII0028 COG3451 # Protein_GI_number: 17988372 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type IV secretory pathway, VirB4 components # Organism: Brucella melitensis # 35 376 10 361 831 180 28.0 4e-45 RTRGNGVANRFYGATVYKAIKQDSVDISEFLENMKLNQQATIDKHIPYSSHIHRNVVRGS DGSMFATWEFIGTSFDCEAEEALEVVTTQLNAMYRSYEGQPITFWRHNVRESFSDHLAAE TGNFYADEASRRYNDSLKSRGFRRNRLFLTICYRPFSAIDKSERRRLKDKQKALELDEAL QDMLDIVKSMSSYLSRFTAKSLGTFEEDGIVFSEQLSFYEYLLTHKWRKVRVTSTHASNI LGNADLFFTADSGQINHIDGTTYFRGLEIKEFTPETGTGLMDALLYAPCDYVVTQSFTCM SREEARKSIVRTRKLLISADDDAISQRLDLDVALDLLTSGHISFGKHHFSMVVYADSLEA LVDDTGEISNGLNNIGVTPVRATIEL Prediction of potential genes in microbial genomes Time: Thu May 26 08:26:23 2011 Seq name: gi|289556252|gb|ADCD01000106.1| Micrococcus luteus SK58 ctg1119142780280, whole genome shotgun sequence Length of sequence - 1626 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 47 - 1027 2969 ## MAE_08670 type II restriction enzyme EcoRI-like protein 2 1 Op 2 . - CDS 1057 - 1422 393 ## BDI_3253 type II restriction enzyme EcoRI - Prom 1562 - 1621 2.1 Predicted protein(s) >gi|289556252|gb|ADCD01000106.1| GENE 1 47 - 1027 2969 326 aa, chain - ## HITS:1 COG:no KEGG:MAE_08670 NR:ns ## KEGG: MAE_08670 # Name: not_defined # Def: type II restriction enzyme EcoRI-like protein # Organism: M.aeruginosa # Pathway: not_defined # 1 325 1 325 336 478 72.0 1e-133 MARNATNKLLHKAKKSKSDEFYTQYCDIENELQYYREHFSDKVVYCNCDDPRVSNFFKYF AVNFDNLGLKKLIASCYVENKEGFSSSEAAKNGFYYEYHKENGKKLVFDDISVSSFCGDG DFRSSESIDLLKKSDIVVTNPPFSLFREYLDQLIKYDKKFLIIANVNSITYKEVFNLIKE NKIWLGVHLGRGVSGFIVPEHYELYGTEARIDSNGNRIISPNNCLWLTNLDVFIRHKDLP LTRKYFGNESSYPKYDNYDAINVNKTKDIPLDYNGVMGVPITFLHKFNPEQFELIKFRKG VDEKDLSINGKCPYFRILIKNKRLQK >gi|289556252|gb|ADCD01000106.1| GENE 2 1057 - 1422 393 121 aa, chain - ## HITS:1 COG:no KEGG:BDI_3253 NR:ns ## KEGG: BDI_3253 # Name: not_defined # Def: type II restriction enzyme EcoRI # Organism: P.distasonis # Pathway: not_defined # 1 121 157 277 277 199 77.0 3e-50 MLSESHFPYVLFLEGSNFLTENISITRPDGRVVNLEYNSGILNRLDRLTAANYGMPINSN LCINKFVNHKDKSIMLQAASIYTQGDGREWDSKIMFEIMFDISTTSLRVLGRDLFEQLTS K Prediction of potential genes in microbial genomes Time: Thu May 26 08:26:45 2011 Seq name: gi|289556211|gb|ADCD01000107.1| Micrococcus luteus SK58 ctg1119142780340, whole genome shotgun sequence Length of sequence - 42076 bp Number of predicted genes - 41, with homology - 38 Number of transcription units - 23, operones - 8 average op.length - 3.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 234 137 ## 2 2 Op 1 . + CDS 294 - 2069 1518 ## COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit 3 2 Op 2 . + CDS 2153 - 2773 455 ## COG1802 Transcriptional regulators 4 3 Op 1 . - CDS 2796 - 3599 573 ## COG4336 Uncharacterized conserved protein 5 3 Op 2 . - CDS 3601 - 4758 1132 ## COG1914 Mn2+ and Fe2+ transporters of the NRAMP family 6 4 Tu 1 . - CDS 4881 - 5141 59 ## 7 5 Tu 1 . + CDS 5052 - 5807 629 ## COG1814 Uncharacterized membrane protein - Term 6014 - 6054 3.0 8 6 Tu 1 . - CDS 6075 - 6545 249 ## gi|239637707|ref|ZP_04678676.1| hypothetical protein STAWA0001_0343 9 7 Op 1 . + CDS 6276 - 6512 405 ## PROTEIN SUPPORTED gi|239918397|ref|YP_002957955.1| LSU ribosomal protein L28P 10 7 Op 2 3/0.000 + CDS 6514 - 6681 287 ## PROTEIN SUPPORTED gi|239918396|ref|YP_002957954.1| LSU ribosomal protein L33P 11 7 Op 3 . + CDS 6683 - 6988 509 ## PROTEIN SUPPORTED gi|239918395|ref|YP_002957953.1| SSU ribosomal protein S14P 12 8 Tu 1 . + CDS 7218 - 7499 362 ## COG0776 Bacterial nucleoid DNA-binding protein 13 9 Tu 1 . + CDS 7657 - 8352 448 ## Mlut_19150 hypothetical protein 14 10 Tu 1 . + CDS 8463 - 9146 526 ## Mlut_19140 uncharacterized protein, copper resistance protein CopC-like protein 15 11 Tu 1 . + CDS 9466 - 9843 380 ## COG2847 Uncharacterized protein conserved in bacteria 16 12 Tu 1 . - CDS 9776 - 13087 1357 ## 17 13 Op 1 . + CDS 11315 - 13573 1851 ## COG3336 Predicted membrane protein 18 13 Op 2 . + CDS 13563 - 14417 711 ## Mlut_19100 hypothetical protein 19 13 Op 3 . + CDS 14500 - 16611 1675 ## COG0526 Thiol-disulfide isomerase and thioredoxins 20 13 Op 4 . + CDS 16652 - 17131 471 ## Mlut_19080 flavodoxin + Term 17157 - 17196 2.5 21 14 Op 1 . + CDS 17254 - 17847 401 ## Mlut_19070 hypothetical protein 22 14 Op 2 . + CDS 17921 - 18364 151 ## Mlut_19060 diaminopimelate dehydrogenase (EC:1.4.1.16) 23 15 Tu 1 . - CDS 18268 - 19248 272 ## PROTEIN SUPPORTED gi|163794676|ref|ZP_02188646.1| 50S ribosomal protein L13 24 16 Tu 1 . + CDS 19509 - 19955 393 ## COG3860 Uncharacterized protein conserved in bacteria - TRNA 20029 - 20102 86.4 # Gly CCC 0 0 25 17 Op 1 . + CDS 20704 - 22233 1234 ## Mlut_19000 hypothetical protein 26 17 Op 2 . + CDS 22312 - 22818 424 ## COG0717 Deoxycytidine deaminase 27 17 Op 3 . + CDS 22815 - 24137 1033 ## COG2270 Permeases of the major facilitator superfamily 28 17 Op 4 6/0.000 + CDS 24206 - 27304 2722 ## COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit 29 17 Op 5 21/0.000 + CDS 27301 - 27861 476 ## COG1006 Multisubunit Na+/H+ antiporter, MnhC subunit 30 17 Op 6 12/0.000 + CDS 27858 - 29489 1532 ## COG0651 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit 31 17 Op 7 . + CDS 29476 - 30135 472 ## COG1863 Multisubunit Na+/H+ antiporter, MnhE subunit 32 17 Op 8 . + CDS 30135 - 30473 336 ## Mlut_18930 multisubunit Na+/H+ antiporter, MnhF subunit 33 17 Op 9 . + CDS 30470 - 30877 409 ## COG1320 Multisubunit Na+/H+ antiporter, MnhG subunit 34 18 Op 1 . - CDS 30959 - 31237 309 ## Mlut_18910 hypothetical protein 35 18 Op 2 . - CDS 31315 - 32316 837 ## COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase - Term 32319 - 32366 19.1 36 19 Op 1 . - CDS 32380 - 35658 2857 ## COG2409 Predicted drug exporters of the RND superfamily 37 19 Op 2 . - CDS 35769 - 36158 273 ## Mlut_18880 hypothetical protein 38 20 Tu 1 . - CDS 36278 - 36754 340 ## Mlut_18870 transcriptional regulator 39 21 Tu 1 . + CDS 36753 - 39113 1738 ## COG2409 Predicted drug exporters of the RND superfamily 40 22 Tu 1 . - CDS 39191 - 39841 597 ## COG0783 DNA-binding ferritin-like protein (oxidative damage protectant) + Prom 40024 - 40083 1.9 41 23 Tu 1 . + CDS 40167 - 42026 1892 ## COG0443 Molecular chaperone Predicted protein(s) >gi|289556211|gb|ADCD01000107.1| GENE 1 3 - 234 137 77 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGDEADAGARRQLGRQAEVRAGHDADHRVAAGDRMVGEEQDGLTRGRHLQRAAHGALGLQ LALPHALERRAVVGGRE >gi|289556211|gb|ADCD01000107.1| GENE 2 294 - 2069 1518 591 aa, chain + ## HITS:1 COG:Cgl0680 KEGG:ns NR:ns ## COG: Cgl0680 COG4770 # Protein_GI_number: 19551930 # Func_class: I Lipid transport and metabolism # Function: Acetyl/propionyl-CoA carboxylase, alpha subunit # Organism: Corynebacterium glutamicum # 8 583 6 584 591 633 60.0 0 MTTTPAARPVTRVLIANRGEIAVRVARAARDHGIASIAVYSDPDADALHVAVADEAFHLP GASSADTYLKIDAVLDVARRAGADAVHPGYGFLSENADFAQAVIDAGMTWIGPSPDAIRA LGDKITARSLAQQAGAPLVPGSDGPVPDAAAARAFAEEHGLPIAIKAAFGGGGRGIRVVR ELGDVEDAFEATVREAVAAFGRGECFVERFLDRPRHVEAQVLADEHGHVAVLGTRDCSLQ RRNQKLVEEAPAPFLTDEQRERIHTSAREICRAAGYTGAGTVEYLVAPDGLISFLEVNTR LQVEHPVTEEVFGVDLVREQFRVAAGEPLSIPEDPTPRGHALEFRLNAEDPAYGFLPVPG PIDAFEAPTGPGVRMDSGVRTGSVVPGEYDSLLAKLIVWGEDRAQAVARARDALAELRID GVPTVVPFHRAVLEQDAFTSGDRLGVYTTWIESEFAEPLAESPYLGAEVPAGGRTAVTVE LDGRAVRLGLPADLYAALLGGGGAGAAAPAGAAGAGKPDDDGAVASPVTGTLASWKVEDG AEVVEGDTVAIVEAMKMETPIRAPRAGRIQLLVAETPASVTRGQAIARLGA >gi|289556211|gb|ADCD01000107.1| GENE 3 2153 - 2773 455 206 aa, chain + ## HITS:1 COG:Cgl0979 KEGG:ns NR:ns ## COG: Cgl0979 COG1802 # Protein_GI_number: 19552229 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Corynebacterium glutamicum # 4 201 12 214 217 99 34.0 4e-21 MAAAAQLRQRIAAAGLVPGERLGEVALAAELQVSRNSLREAFTMLASEGLVERRPHRGVF VAAPGPEDVRGLYRTRRVIQLGALEHGELTPGAARQLRCAQDLLSGGPDTPARVLGDANH RVHVGIVDLAGAPELTRLMASVQARVRLAFHPMDEQTRLHVQFADRNRWIVERLLAGDLP AVHAMFGDYLDEAEQFVLAHLAAVGD >gi|289556211|gb|ADCD01000107.1| GENE 4 2796 - 3599 573 267 aa, chain - ## HITS:1 COG:Cgl2492 KEGG:ns NR:ns ## COG: Cgl2492 COG4336 # Protein_GI_number: 19553742 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Corynebacterium glutamicum # 15 267 7 264 264 307 62.0 2e-83 MTTTTPLPPLDGATTPAQARERFRAGLVRPTSGIADGYAQANLVSIPQDHAYDVLLFAQR NPQAVPLLGVFEAGEVNGPALDGDVRTDVPQYVVYRDGVETDRPTDLLDVWRDDLVTFVI GCSFTFESALVAEGIRMAHQDAGVNVPMYRTTRRCASAGRLSGPLVVSMRPLPADRVADA VRITSRYPAVHGAPVHVGDPAGLGITDLSAPDFGDAVEVPQGHLPVFWACGVTPQAAIME SRPPLAITHAPGHMLITDLPDRMFQVP >gi|289556211|gb|ADCD01000107.1| GENE 5 3601 - 4758 1132 385 aa, chain - ## HITS:1 COG:Cgl0978 KEGG:ns NR:ns ## COG: Cgl0978 COG1914 # Protein_GI_number: 19552228 # Func_class: P Inorganic ion transport and metabolism # Function: Mn2+ and Fe2+ transporters of the NRAMP family # Organism: Corynebacterium glutamicum # 1 383 50 435 436 366 61.0 1e-101 MFLMATSAIGPGFITQTATFTVQMGAAFAFAILVSILIDIAVQMNVWRVIGVSGMRAQEL ANSVLPGLGWVLAALVFLGGMVFNIGNIAGTGLGANAMLGVDPLIGGAVSALIALLIFLS KRAGVALDRIVVALGAVMILLMLYVAITSAPPVGEALRQSVMPEEVDFFVIVTLVGGTIG GYITYAGAHRMIDSGVKGVDDVQDITRSSVASILVTGLMRALLFLAILGVVASGAVLSKD NLAASAFQAAAGDIGLRMFGIVLWAAAVTSVIGASYTSISFVTRSTTSARTRNLLTVAFI VVCTALYLALRQAPQTLLVFAGAFNGMILPVGFAALLYVAWRRRDLLHGYRYPGWLLVIG ALAWIVSVFIAVRGFIPMVEMITGA >gi|289556211|gb|ADCD01000107.1| GENE 6 4881 - 5141 59 86 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MHAAGGVRLVGTARRELIGQGRGLFRRVRHVSMVAARGGARQAGEAFLRTGCHDTRSSCC QDCSTTATVSPAPRDARHLAWRPRRR >gi|289556211|gb|ADCD01000107.1| GENE 7 5052 - 5807 629 251 aa, chain + ## HITS:1 COG:Cgl2891 KEGG:ns NR:ns ## COG: Cgl2891 COG1814 # Protein_GI_number: 19554141 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Corynebacterium glutamicum # 22 250 13 240 240 159 51.0 7e-39 MSHTSEQSSPLADQLPPGGPDEPHASGGVHARLNWLRAGVLGANDGIVSVAATVVGVAGA TTALTPILLAGAAAVVGGAFSMALGEYVSVSSSSDSQKSLIAKERRELEEDPEGELEELV QLYEADGLSRATAEAAARELTEKDALAAHLRMELGMAEEDVVSPWAAAGASFLAFLVGAL LPFLTVVLAPVGLRVPFTFGVTLVALAVTGWVGARLGDAPALRAAVRVVLGGALALGLTF AVGSLLGASVA >gi|289556211|gb|ADCD01000107.1| GENE 8 6075 - 6545 249 156 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|239637707|ref|ZP_04678676.1| ## NR: gi|239637707|ref|ZP_04678676.1| hypothetical protein STAWA0001_0343 [Staphylococcus warneri L37603] # 1 156 9 164 164 286 100.0 2e-76 MIGRTSLSLAMSELHSLRDQVRHDGVDTAHVDGLDALGGQRQRDVAAQGGDPVGLLLDVR VEPALGATVRVGDAVAESRPSPGYLAVSCHDHSSWQVVVKGRAEPAWRRAADLSADTCCE PRPGCGHRTLTATSRKGGPGWVRANRSSLWDRWCGR >gi|289556211|gb|ADCD01000107.1| GENE 9 6276 - 6512 405 78 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239918397|ref|YP_002957955.1| LSU ribosomal protein L28P [Micrococcus luteus NCTC 2665] # 1 78 1 78 78 160 100 1e-38 MAAHCQVTGAGPGFGHSISHSHRRTKRRFDPNIQKKTYWVPSLRRNVTLTLSAKGIKTID VRGIDAVVADLIAKGVKL >gi|289556211|gb|ADCD01000107.1| GENE 10 6514 - 6681 287 55 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239918396|ref|YP_002957954.1| LSU ribosomal protein L33P [Micrococcus luteus NCTC 2665] # 1 55 1 55 55 115 100 6e-25 MAKDKDVRPIIKLKSTAGTGFTYVTRKNRRNNPDRITLKKYDPVVRKHVDFREER >gi|289556211|gb|ADCD01000107.1| GENE 11 6683 - 6988 509 101 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239918395|ref|YP_002957953.1| SSU ribosomal protein S14P [Micrococcus luteus NCTC 2665] # 1 101 1 101 101 200 100 1e-50 MAKKSKIAKNEQRKAIVARYAEKRLELRKTLVDPNASDEAREAARLGLQKLPRDASPVRV RNRDAIDGRPRGTFQRFGISRVRFRDMAHRGELPGVTKSSW >gi|289556211|gb|ADCD01000107.1| GENE 12 7218 - 7499 362 93 aa, chain + ## HITS:1 COG:BMEI0877 KEGG:ns NR:ns ## COG: BMEI0877 COG0776 # Protein_GI_number: 17987160 # Func_class: L Replication, recombination and repair # Function: Bacterial nucleoid DNA-binding protein # Organism: Brucella melitensis # 1 92 1 92 93 66 45.0 1e-11 MAMNRKELVAAVAERSGNTQAAVSDVLDALFEVFTAQVKKGEKVSIPGWLAVERTERKER TGRNPRTGEEITIPAGHSVKVTAGSKLKAAASE >gi|289556211|gb|ADCD01000107.1| GENE 13 7657 - 8352 448 231 aa, chain + ## HITS:1 COG:no KEGG:Mlut_19150 NR:ns ## KEGG: Mlut_19150 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 231 1 231 231 234 96.0 2e-60 MRSAVAAAPWAPSGLEDAPPRVVRGPARLVRGWAGALAMTALAALFHTAAEPGHGFPEVG VVAFAAVLAAPLCTALAGRALSLWRTAAAVAIAQGLFHVLYGLAAGGHAVAPVAGVDPAH LGHAHPGAGALLPPGEALSGAPAGHLTDLRMLAAHVIAAVLTVLVLRRGEALVLTIAERV VAAVCPPPAAHGPLPTPARLRVPVPPVLRPATSLALLSSPGRRGPPFALAA >gi|289556211|gb|ADCD01000107.1| GENE 14 8463 - 9146 526 227 aa, chain + ## HITS:1 COG:no KEGG:Mlut_19140 NR:ns ## KEGG: Mlut_19140 # Name: not_defined # Def: uncharacterized protein, copper resistance protein CopC-like protein # Organism: M.luteus # Pathway: not_defined # 1 227 1 227 227 289 96.0 6e-77 MHHQTAPVRRAARAAAGLTLLPALVVAGAAPAAAHDELIRTAPAVGETATTAPSEVSLTF SGELIDGEGIQNLLQVRDADGNQWQSAAGTVDGPTFSAPLCEGLPNGDYEVAYRVVYSDG HSEERSFDFAVDDPAAPAAGTAPQGCGTAVAGASTAASPEAAAGQGDAASAEATAQADAS DAAQPADTDALPAWVWVAGIAGLAVLVVAFLLMGRRARALGHLDDGR >gi|289556211|gb|ADCD01000107.1| GENE 15 9466 - 9843 380 125 aa, chain + ## HITS:1 COG:Cgl1633 KEGG:ns NR:ns ## COG: Cgl1633 COG2847 # Protein_GI_number: 19552883 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Corynebacterium glutamicum # 1 118 64 180 182 84 42.0 6e-17 MTGSFGMLENSSDQDLHIVGVRSELGETVELHEMVSGEDGQMVMQQSPDGFTVPAGGSFE LAPGGNHVMFMGLTDPIEPGEDVTYDLELEDGSTLEVTSVVRPFTGANESYHGGDSHESE DHADH >gi|289556211|gb|ADCD01000107.1| GENE 16 9776 - 13087 1357 1103 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MDVHELVAHVGLQREPEEVRVVEHQDRACEVDPRHDRVRDEPTPRGVHDPQDPLAGAARP VRAGRQGPQRQGDGCAQDEEDGAEHRQRHVAHHVRAEQDAAVHGRGPGGRPQQHGQPHAP RDGAQHGPAVAAAAQLPHGAQVPEGQERDDRDPQPVEPPHRDPPGALEGRRQLVAGEDAG RGGVRRDLLRHGRGRPGEHGGDTHDGAHDHGLHGDELPQQATRGGGAGTVRAGVEAGDHP PAVQQTDQAEAQGRQELGRHEDAVGAQQLGRIVHADRRVDHAGQRHRDQAQPGEHGVAGQ DRVQQGRRALPAQAAAPPLRPVGPHEGVRDRDEHEQSAHPHDDAEQVQADRVHGAGVVVT ARRVPDQGQGHEGEHRQDAGPEQAVVGADGDRQRGHDGGDHGDPEPRLAHGDADHVGRQA VREALPRRDGDAGQIRVGQHADGQRGHRPHAGAEGGDPHHAGERGVLGQRCGVRVLAPLP GGAVPPFRARRVRRQDPGREDQRGDGQGHRQVGDELPHGHAPAGDPPRVGELARGRHASQ PAGGGEAGGSRGGHEHPDPPGHTDRPRRTGAGGVVVLSGVAAPGGGGGGGHGVHPLKACG RPTTTGAARRRRAPGSGEQGVAHEAALGAAGRDREDRRTDGHGPQVQVVRLGEPGLDGDE LSVHVRLVGGEDQAGAHLQRPARVVVVVAATQHPVLGLLPAGPPQVRDVRDDREARGADG VEVRLVVLLLPREGGAGAEATADDLLLGRAVELVPRVHEHLDAPDHHGRAVRDPRGDAHL LGAHAPHHAVEVRGVRGRVAGAVHLPEEVAHRGAGGVGAAGGAEALLHPALGGERPGRLE EHAPGVGHGHPVVAADLQQQVAVAERGVQAVDLLERRQRAQPGRGPVRGHAADELRAEAE RHGEPRGGGGELRLGVGDRGAALGQARRVVGEQAQHPLDAHPVRVLAQVEGEEDGVGLGG GVDAGLARPVERHGVRAHGRADGHPGGLAAGLGPAGPADVALDAGVAHDLGGRRPRPGRG GRARGGGGRRVTGAVAECRAQQAAAHRARPEEQAAAGGAPRGRAGVLAPVRPVVVVRPDG GVSGRHGPPIRGSRRRGMTRWRR >gi|289556211|gb|ADCD01000107.1| GENE 17 11315 - 13573 1851 752 aa, chain + ## HITS:1 COG:Cgl2402 KEGG:ns NR:ns ## COG: Cgl2402 COG3336 # Protein_GI_number: 19553652 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Corynebacterium glutamicum # 35 722 34 692 717 267 29.0 6e-71 MSAATAPARGSHPAENDDAARSGPSGPVGVPRWIWVLVAAAGAAGLAAAGWLTGVTAARQ LSDPGWITRWGVPVGELVSNLAMSLTIAALIFAAGVLPPHAAGTERWHRSARQRREDTDA APLPEHPAFTRVMRIAALSAGVWTVAALSVGVLSYSDLAGIPVTAGQGFTDGLAAYVVGI SVGQAWFWVTVIAAVVTTLAIAVRSHNGLFWTGILAMLALVPLALIGHAAGGDDHTGAVN SIGLHLLGVVVWVGGLLVLVAISDTLVGPNGAQGRGRSLRRQGPAPLLHTVLTRYSVLAG LGLVTVALSGVVNASIRMDDPAQLLSPYGILVSAKFLAALGLGLIGLLHRRWVIPRLDAG PDRPSPAPARRLLWQLIAVEAVIMGAVMGVSSVLSRTAPPVPEEIAPDATPARILTGYEL PPALEGARWITMWRFDWLWVAIIAFLSLWYLRSVWQLRRRGDRWPVLRTVAWCVGLAVLL WATSGSPAVYGRVLFSAHMVGHMTLTMLSPVFLVLGAPITLALRALPARTDGTRGPREWI LWIVHSPWGRFITNPIVAGVNFAGSILVFYYTDFFRFSLQTHVGHEFMNVHFLLTGFLFA LVMIGSDPLPRRPPYALRLVLLMATMVFHAFIGVAMTTSTGLMQASWFGNMGRDWGPTAL EDQRIGGAVMWGIGEFPTVMMAVMVAVLWYRSDRKNADRLDRQADRDGDAELRRWNEMYA HMRGTPVTDAPSDAEPVARDSSTGPEEARDVR >gi|289556211|gb|ADCD01000107.1| GENE 18 13563 - 14417 711 284 aa, chain + ## HITS:1 COG:no KEGG:Mlut_19100 NR:ns ## KEGG: Mlut_19100 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 34 284 12 262 262 333 97.0 4e-90 MSADRVRPLARPAAPRRGRPRLVAAVAAGLLALTGCAAGDNDPAAASAPADGVHDDAGTA APTESAAPEGLGLGDRQDERMAEAAAERAATFGFVRQRAATAEEIDAAREDSRDRRADAD RTTVQPAQCKAPLTALDFSPIALDGAEATRVDVGADTFTGTGTVEVARLTGQGRQDVERH IQTVNALRADCREMTMTVQEGDATVDYRLEVSDAPLSDGTPAQSALVWERTLASESEPQL TAQVLTAVTSDAVVMVSFVGRPEAGRKEFTLIAEEMLAAALAAD >gi|289556211|gb|ADCD01000107.1| GENE 19 14500 - 16611 1675 703 aa, chain + ## HITS:1 COG:alr1013_1 KEGG:ns NR:ns ## COG: alr1013_1 COG0526 # Protein_GI_number: 17228508 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Nostoc sp. PCC 7120 # 29 189 4 171 173 162 44.0 2e-39 MMVGMTAPQTPNPAPSADAPAAVPRAATRVRASELVGRGWLNTGGEQVTLEDLRGKVVLL DFWTFCCINCLHVLDELHPLEEEFADVLVTVGVHSPKFEHEADPDALAAAVERYAIEHPV LDDPELTTWQAYSARAWPTLVVVDPEGYIAAHLSGEGHVAGLYGLVRELVAEHEAKGTLH RGSGPYVPPAPVARDLSFPGKAVSLGGRGSRPGSFLVSDTGHHRLLEVAEDLTTVLRAFG GGDPATADAGQAELAFPTPGEKGHADGGPDEALFNEPQGLALLPEDVAERVGYDVVVADS VNHRLRGLRLSDGHVSTLAGNGVQKLIDSERAKEAAAVEDEEDVAVDLADLPGEPTAISL SSPWDVVWHPALGRVVIAMAGTHQLFDFDPVTGALAVHAGTALEGLLDGDAGRAWFAQPS GLSVGADGALWVADSETSAVRWVRTGEDGRREVGTAVGAGLFDFGHVDGEADRARLQHPL GVTALPDGSVLIADTYNGAIRRYAPAGEDAAGRAVPATVSTVARGLLEPSDVLVEHDADG NDTAIVVVESNAHRLTRLAVPEEFLTVDEGARQTQRPRTPVVAGDLDLTIGFAAPTGQKL DDRWGDPTQLKISSSPEELLLEGAGTSTGLHRTLRLNPEVEEGVLHITARAAACDGEKGQ PIPDHAACHLYQQDWGIPVTVHTPDRAPEGAETRLDLDLRGIH >gi|289556211|gb|ADCD01000107.1| GENE 20 16652 - 17131 471 159 aa, chain + ## HITS:1 COG:no KEGG:Mlut_19080 NR:ns ## KEGG: Mlut_19080 # Name: not_defined # Def: flavodoxin # Organism: M.luteus # Pathway: Porphyrin and chlorophyll metabolism [PATH:mlu00860]; Metabolic pathways [PATH:mlu01100]; Biosynthesis of secondary metabolites [PATH:mlu01110] # 1 159 1 159 159 252 97.0 3e-66 MTTLIVTSSAHGSTREIAERVAEVLRTSQAVPTVVEDVEGAAAWLATADAVIVAAPVYTG SFAADARAFLDTRRAELADLPLVILASGGAPELARPVREKLESYGPREVAYFRGALVEER LGRLEKLKLKLSRNEHYGDFRDWDAIEAWAKTLSGAGVR >gi|289556211|gb|ADCD01000107.1| GENE 21 17254 - 17847 401 197 aa, chain + ## HITS:1 COG:no KEGG:Mlut_19070 NR:ns ## KEGG: Mlut_19070 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 197 1 197 197 233 94.0 4e-60 MSPSARRPAASSRPARPRPTTAPLALPDRPGWVRLAAGAVVPGVVAAVAALAALQVFVLN PLAAAPGDRGLGRIYADLSAAGELGVPFVLSAVILAAGLGVAAILWFLTWRREEVDPLAV LALGLASLVAVSPAYFMASFGPGMALADAYGIGGGDHSPWAWPIYVVSALALAGLVAVVV LLLRGPAGGLGAPRRRA >gi|289556211|gb|ADCD01000107.1| GENE 22 17921 - 18364 151 147 aa, chain + ## HITS:1 COG:no KEGG:Mlut_19060 NR:ns ## KEGG: Mlut_19060 # Name: not_defined # Def: diaminopimelate dehydrogenase (EC:1.4.1.16) # Organism: M.luteus # Pathway: Lysine biosynthesis [PATH:mlu00300] # 1 62 42 103 258 109 88.0 3e-23 MDAAAREGGHVAMISTGWDPGLFSLNRVLGAKLFPQPQQNTFWGRGLSQGHSDAVRRRPC RRATEGPGGDGGAHHARGRPVPALAHGAGRADPPGRLSRGEASGAWHRAGRRRRRRQASS RATAIIAGIATIVVTRIVSFETRRPVS >gi|289556211|gb|ADCD01000107.1| GENE 23 18268 - 19248 272 326 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163794676|ref|ZP_02188646.1| 50S ribosomal protein L13 [alpha proteobacterium BAL199] # 4 325 4 309 312 109 26 3e-23 MTQVLSGFAVVWVIILVGVLVGRTGVLGEHGRTVLSRAAFFIGNPALLFVTLSRADVGAV LGPQLWVASLSAFAAAALYLAVTTPLLKGRPASERIMSALSASLVNSANLGIPIAAYVLG DAALAAPALIFQLAIYTPLYVAAMDAATAREARRRTTAGRRRAVRRSPGRAVADQVRHTV ANPLILGSVAGLVFSLTGWSLPGPLMESVELIGGLSIPAMLLAFGMSLVGSRPLERSGGR RADVLLASAVKLVVHPLLAWLLAQFVFGLDARHVFVAVVLASLPTAQNVFVTAVRYDTGL RVSKDTILVTTIVAIPAMIAVALLLA >gi|289556211|gb|ADCD01000107.1| GENE 24 19509 - 19955 393 148 aa, chain + ## HITS:1 COG:alr1044_2 KEGG:ns NR:ns ## COG: alr1044_2 COG3860 # Protein_GI_number: 17228539 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Nostoc sp. PCC 7120 # 52 120 21 90 91 67 48.0 8e-12 MTRQSDLKTLIRARMAVTGERYTVAAAALADEWQSAERYHATVLARFFDGDRLRSIPARR KPRVAVLLELLRRFRAGRAYAEAEVNDLLRPAHEDVATLRRELVDYGFLDRADGVYRLAD AGPDLDPRFAADLPVDLERRLREIRAGR >gi|289556211|gb|ADCD01000107.1| GENE 25 20704 - 22233 1234 509 aa, chain + ## HITS:1 COG:no KEGG:Mlut_19000 NR:ns ## KEGG: Mlut_19000 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 509 1 509 509 702 96.0 0 MRDTTADAAQVPARPDDAAVYRYLAFGEADRPFLVGGPRPAPLAPAATPSPVADLESVRA AIRAHGGPLASTAHMRGRPAPTPPAAHASRGLRGAARTLTATRRDVAARLADSRERADVP VEALLNSAFVDAHADERPAERGVPRGRLAGLVNAVLPPARPADDDAAAGLLLALREPARE VFASDSFAARPYADAPTVRALFEDFLAHPRRHDPERFWRLLNLELWLRDAVDPDAAPASP AAAVDEAAAAPAPAKPDHEPNPGKELDLVSAEDGRRYRRFPVQTGLVDRDTDLQAYLRGE IEDFFRDLPAEAMPQDAPWHFSVSEKIVAITQGRSYYTWEVRPSVAARALSRLVTRTPAG IGLGDPTTMQLAIQEAGLPRIVLSAAAGAAGKVAGKRGVFYNVVGGNVRAIDGPTTYSTF PANVSAKLPPAEPDRVAAEVSAMIRAADIPAWAKASFSGTVVMDANDIGRNALGKDTAAS AAVLEAAFADNPLGQGRERTPLAVVVRMD >gi|289556211|gb|ADCD01000107.1| GENE 26 22312 - 22818 424 168 aa, chain + ## HITS:1 COG:Cgl2789 KEGG:ns NR:ns ## COG: Cgl2789 COG0717 # Protein_GI_number: 19554039 # Func_class: F Nucleotide transport and metabolism # Function: Deoxycytidine deaminase # Organism: Corynebacterium glutamicum # 1 161 26 186 189 244 70.0 7e-65 MVQPASVDVRLDRFFRLFDNHRYAHIDPRQEQDELTRLVEVDPDEAFILHPGEFVLGSTY EQVTLPDDLAARLEGKSSLGRLGLLTHSTAGFIDPGFSGHVTLELSNVATLPITLWPGMK IGQLCFFRLSSSAQSPYGTGANQNRYQGQRGPTASRAHRDFHLTRIER >gi|289556211|gb|ADCD01000107.1| GENE 27 22815 - 24137 1033 440 aa, chain + ## HITS:1 COG:Cgl2562 KEGG:ns NR:ns ## COG: Cgl2562 COG2270 # Protein_GI_number: 19553812 # Func_class: R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Corynebacterium glutamicum # 14 431 14 436 440 340 47.0 3e-93 MTDVALPPVASAAPRRQVAAWALWDWGSAAFNAVMVTFVFGTYLASDAFGPDERGTAWLS TAMAVAGVVIAVTAPVLGRRADGAGRRRRGLGLTTGAVIACTAACFWVTPEESSLLLGVT LIALGTVFFEFAEVQVNAILVHISTPATIGRISGIGWGAGYLGGILLLLIVFVGFVSGDA HWFGVTEDAALNIRVVALVAAAWFLVFAIPVLVAVPDPAPAPAADGGPRRESVLGSYREL GATLARMWREDRNTLWFLVASAVFRDGVGAVFVYGAILGTTVYGLAASDVILFAIAANVV AALGAFVGGRLDDAVGPRRVILGSLAAMVLVAGALFFASGTLAFWVGGLALCLFVGPVQS ASRAFLGRLTTPRTAGEVFGLYATTGRAVGFITPALVTLALALHPDNRVVIPVIVVVLVA GGLLFARVTEPITRSAESVR >gi|289556211|gb|ADCD01000107.1| GENE 28 24206 - 27304 2722 1032 aa, chain + ## HITS:1 COG:Cgl2672_1 KEGG:ns NR:ns ## COG: Cgl2672_1 COG1009 # Protein_GI_number: 19553922 # Func_class: C Energy production and conversion; P Inorganic ion transport and metabolism # Function: NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit # Organism: Corynebacterium glutamicum # 1 544 1 529 532 389 47.0 1e-107 MLVTLTALFVVALAAPVIFRWTGRQGFYLLAAAPAAGFVWLLTQLPHVFALQEALDAGRP VPASAAHLDRAVPWVPYLEIELAFRMDVLAAFMSLIVLGVGALVLAYCARYFREHEPRNA VFGGQLLAFAGAMFGLVTTDDLMVLYTFWEITSVLSFLLIGYSGHRIFARRSAITALIVT TFGGLAMLAGLIMLAHFAGSWRISGVLEAAPALMADAGLRGLLEVAVALVLIGALTKSAQ APFHFWLPAAMAAPTPVSAYLHAAAMVKAGVFLVARLAPEFHGLAMWQVLVIGVGLWTLL LGGWRALRQTDIKLVLAYGTVSQLGFLMVANGLGTRDAAMAGLAMLLAHAVFKAPLFMVV GIIDHEAGTRDLRQLSGIGRRHPALAAVAVVAGLSMAGLPPLFGFVAKESVLEGLAAHGV AHADVWGWTPLVLMTVGSVLTFAYTWRFLWGSFAAKRDEEGAAVPVTRFHTRVTFLELAP AGLLALTGLVLAVLPGPLEHLLAAHTATIPALDPAASPAHLALWHGWTPILALSAGVWVL GALLALGRPGVEAFQRRVEFPVDALRTYRKITGALDEVAIWVTGRTQTGSLRRYLGIILA TAFLLPAAFLLFPVGRSERTLATSFLSADVAWFQTPAQLVVVLMIAVATVFAVRARRRFK AIMLVSVTGYGAAALFAMRGAPDLAITQVLVETIILVTLILGLRVLPPDWYDRRTGSRRI ARMAVAGGFALTMMWIAATALAARTAERISLPMPELAYTDGYGTNAVNVTLVDIRAWDTW GEITVLAAAATGVASLIFLQHRDGRTRSIDDVAPGSVGDFGADSSLGARELSVVRSFAVD DRKGQWLVAGHTMAPERRSIILEVVTRFMFPIMMLLSVYLLLAGHNTPGGGFAGGLLAGL ALTLRFLAGGRYELQEASVIPAGPMIGLGLAIATLTGIAPLFFGGQILQSYVVEFTDLPL FGDALKLVSATAFDIGVYLVVVGLVIDVLRSLGGEVDRRGEEARRARLRAAARRRHPRMP TPSTPDAPEAAR >gi|289556211|gb|ADCD01000107.1| GENE 29 27301 - 27861 476 186 aa, chain + ## HITS:1 COG:Cgl2673 KEGG:ns NR:ns ## COG: Cgl2673 COG1006 # Protein_GI_number: 19553923 # Func_class: P Inorganic ion transport and metabolism # Function: Multisubunit Na+/H+ antiporter, MnhC subunit # Organism: Corynebacterium glutamicum # 2 136 1 144 163 94 39.0 1e-19 MMTVDLALLLAMGVMFAGGIYLVLERSLTRILLGIVLINNGAIMLLFLSSGGTGLAPLFV RGRDPHEYADTLPQALILTAIVIGFAVVAFLTAMIYRSWLLVREDEVEVDAEDVKIARMP AWDAEDDAELVEESSEFLDDAADPNAHYEHATEARPQVQHATPAPQAPTGSGAASRGRRP EGGERA >gi|289556211|gb|ADCD01000107.1| GENE 30 27858 - 29489 1532 543 aa, chain + ## HITS:1 COG:Cgl2674 KEGG:ns NR:ns ## COG: Cgl2674 COG0651 # Protein_GI_number: 19553924 # Func_class: C Energy production and conversion; P Inorganic ion transport and metabolism # Function: Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit # Organism: Corynebacterium glutamicum # 11 519 15 530 566 429 49.0 1e-120 MSIGSVPLTDLAPLAVMLPVLGAAVTFMLVRRPRAQITVTVSALVLTLVLDALLLAAVWD TGVAAVHLGGWPAPLGISLVVDRLSALMLVVSALITLAVLLYASAQGLINRDEGGPVSIF HPTFLILVAGVSNAFLAGDLFNLYVGFEILLTASYVLLTMGGTAPRIRAGITYVVVSVIS SVVFLIAIAMVYAATGTMNMADLAVKLGELPSDVQMVLHVLLLVGFGIKAAVFPLSFWLP DSYPTAPAPVTAVFAGLLTKVGVYAMIRTETLLFPGEHVNALLLVVAALTMVVGILGALA QTDIKRILSFILVSHIGYMIFGLGLATEAGLAATVYYVAHHITVQTALFLVTGLIENRAG TANIDRLGSLAKVSPFVGVLFLVPALNLGGIPPFSGFLGKVGLLRGGVEQATPLAYTLVG VSLLVSLLTLLVVVRVWTRAFWRRVEDVEHPPAQLVAAYERAVARGERPRPLEPGLVLPT TALVGLTLVFTVAAGPLFALADEAATDMLDRSPYIAAVLDDAAAERAARNLSVDPTEVHD ARK >gi|289556211|gb|ADCD01000107.1| GENE 31 29476 - 30135 472 219 aa, chain + ## HITS:1 COG:Cgl2675 KEGG:ns NR:ns ## COG: Cgl2675 COG1863 # Protein_GI_number: 19553925 # Func_class: P Inorganic ion transport and metabolism # Function: Multisubunit Na+/H+ antiporter, MnhE subunit # Organism: Corynebacterium glutamicum # 26 175 13 163 169 63 28.0 2e-10 MPGSDSARRGVVRRNRIRGIVAQWPLILVMVAVWCALWQDFAPHVALTGLAFALLIIGLF PMPDIPFSGRLNPWWSLVFTVRFLVDVVRASVNVTGVVMLRGRRARGSIVGVPLRSHDDL IITLVSHALALVPGSIVLDVDRVRSVLYLHVLDATTDEDVEGFRAKALDVEAGIIRAVGT REDLELVRRFPSSAPPAARAEDRRGPADPSAARPPKEEA >gi|289556211|gb|ADCD01000107.1| GENE 32 30135 - 30473 336 112 aa, chain + ## HITS:1 COG:no KEGG:Mlut_18930 NR:ns ## KEGG: Mlut_18930 # Name: not_defined # Def: multisubunit Na+/H+ antiporter, MnhF subunit # Organism: M.luteus # Pathway: not_defined # 1 112 1 112 112 177 96.0 1e-43 MDPMDLATWAGGALLVVGALGALYRIVRGPSLLDRAIATDVLLVVFSGMLVLEMAVHRHT HHVVLVVLAAAVGFVGSVTVARFAEDRRPDHSLEDQARVPGTTDVPGGEEDR >gi|289556211|gb|ADCD01000107.1| GENE 33 30470 - 30877 409 135 aa, chain + ## HITS:1 COG:SA0584 KEGG:ns NR:ns ## COG: SA0584 COG1320 # Protein_GI_number: 15926305 # Func_class: P Inorganic ion transport and metabolism # Function: Multisubunit Na+/H+ antiporter, MnhG subunit # Organism: Staphylococcus aureus N315 # 1 95 1 97 145 58 35.0 4e-09 MTETATLLDWLAAFLLVSGAFFSLVAGVGLLVLPDLLARMHAAAKPQVLGLLLMLAGLAI EWRSWVWLPVLLLAWVTQMVTAPVASHLVGRTGYRTKHARRELLHRDELAAVVRRAEPPA DPGPRRAGARPRGRG >gi|289556211|gb|ADCD01000107.1| GENE 34 30959 - 31237 309 92 aa, chain - ## HITS:1 COG:no KEGG:Mlut_18910 NR:ns ## KEGG: Mlut_18910 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 92 1 92 92 138 98.0 5e-32 MNTLAQKALSAGITLVGGIVGSRVVAGGWRLVTGHSAPDDAADESLPLVEALSFAFISAG VAALLKVAGQRGAGAAIRKVSESTAHRVDHEV >gi|289556211|gb|ADCD01000107.1| GENE 35 31315 - 32316 837 333 aa, chain - ## HITS:1 COG:MT0833 KEGG:ns NR:ns ## COG: MT0833 COG0115 # Protein_GI_number: 15840224 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase # Organism: Mycobacterium tuberculosis CDC1551 # 33 301 18 275 295 159 41.0 7e-39 MRPTSFSPAAGSPVLVLLETDANGAPAPRLADPAVPHLSVTDQGVTRGDGIFETALAVAD GLGTLRMRKLGAHLGRLAASATALQLAAPEAAAWEAAVALGLRAFTEANDVAPGDRLAVR LTVTRGPDAAPGAVPASTAWALLSPAPAIEDEERQRGLRVLLLDRGIDSQAPERSPWLLT GAKTLSYAVNMAALRHARAHGADDVVFTSADGYLLEGPTSTVLIVRTGEDGVRRLLTPLR QKGILAGTSQAVIFAAAHAEGWELGYGPLVPADLKGAEGVWLVSSVRGVLPVRAVDGVEI PVDHALTGMLQAHLDADGDPGRHVSGDPVPTAG >gi|289556211|gb|ADCD01000107.1| GENE 36 32380 - 35658 2857 1092 aa, chain - ## HITS:1 COG:SA2339 KEGG:ns NR:ns ## COG: SA2339 COG2409 # Protein_GI_number: 15928131 # Func_class: R General function prediction only # Function: Predicted drug exporters of the RND superfamily # Organism: Staphylococcus aureus N315 # 467 1086 117 728 829 424 38.0 1e-118 MATLLYRLGLGAARRPLLVILAWVLALALAVGGFLAFGGTLSSTVTIPGTPTAQVTDRLK EEFPEASRGRGQVVFTTQDGSPLTDAQREQITALLDDVAEQSAVEGVVDPFEAQAQQDDA RTRLDEGRTELADGEQRLADGRQEIEDGRAELERRTAEADAGEQRLAEAAAQLEEGQATL DAARADLEERGLEALPADALAPLREAEQKVADGQEQLDAGRAELEEQAERLEAGQAEIDA QRQELEAGQAELGDRWTELEAGQAELDAQAEQLAAGRAELEQARDAALAEAEAAGIPAEQ VAAQFADQEAQLAAGEAQLAAGQDQADAARAQLEAAQAEADAGAEQLAAAQAEADDGAAR LAAGRQQLQESEAELEAGREQVAAGRQQALDAAEAELDAQQQKIDEGRAEYEQGVAELED GRAQLAAGAERLDQAEADLADGRAELDDGRVEAERGERTLALAEDFRTVSEDGSTAVGIV TFTTPTLDVTAEDKEAVTGALTGADIDGVAVHPSQELNATVPSLLGPGEVVGLVVAAIVL VVMLGTLVGAGLPLVNALVGVGVGAAGALAFSSAVEMISVTPVLGVMLGLAVGIDYALFI VNRHRHELRRGTGLHESIALATGTSGNAVVFAGVTVVIALAALNVTGIGFLGLMGTVGAV CVAVAVLVAITLTPALLALAGPRVLSRRERARLADTSPAVGEGAHAVRRAHRRATLSTPT ALATALASVALLVLVAVPFWSMRLGLPDGGSEPEGSDSQLAYELTAEKFGEGYNGPLVVT VDLPTGLDEGRATDAQLDVGEQLAALDHAHAVVPAGFNEDRTVAMYQVLPEEGPNAVSTE DLVRELRSLDPAGDASNPGVAGVTSGFIDVSDTLAEALPLYLGVVVGLSLLIMILVFRSI LVPLIATGGFVLSVFAAMGGVVAIYQWGWLGALFGVHNPGPVLSFLPTIMVGVLFGLAMD YQLFIASGMREAYAHGLPARQAVLSGLRSGRAVVMAAAIIMISVFGGFIFAEDAMIRPIG FGLAFGVLLDAFVVRLLLMPALMHLLGDAAWWLPRWLDRIMPDVDVEGAQLERAHTPGHP SGPAPDGGAHRA >gi|289556211|gb|ADCD01000107.1| GENE 37 35769 - 36158 273 129 aa, chain - ## HITS:1 COG:no KEGG:Mlut_18880 NR:ns ## KEGG: Mlut_18880 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 128 42 169 170 209 95.0 2e-53 MYRGWDGLAAAVGDDGPYPAVVRALREGGTATWTTWDWHRAAPGPPRRTAPADVVVCEGV GALSTAARPLLDLAVWLELETPARRTRALARDGDTFAPHWDRWAAQEEDYLARHAPRAAA DLILRLPST >gi|289556211|gb|ADCD01000107.1| GENE 38 36278 - 36754 340 158 aa, chain - ## HITS:1 COG:no KEGG:Mlut_18870 NR:ns ## KEGG: Mlut_18870 # Name: not_defined # Def: transcriptional regulator # Organism: M.luteus # Pathway: not_defined # 1 158 1 158 158 199 96.0 3e-50 MTTQPPSAPAEHLAVVHALRVFSESAEHAVDEAGRGVGLHRTDLRALAYLMARATAGEPV TASDLGAHLHLTRASATALVDRLAAAGHVRRRRDEGDRRRVLVEHTDTARRDGQRAFEPM SQRLSAALEGFSAAELRAAVRVLEAATVALTDPAPEDP >gi|289556211|gb|ADCD01000107.1| GENE 39 36753 - 39113 1738 786 aa, chain + ## HITS:1 COG:Cgl0608 KEGG:ns NR:ns ## COG: Cgl0608 COG2409 # Protein_GI_number: 19551858 # Func_class: R General function prediction only # Function: Predicted drug exporters of the RND superfamily # Organism: Corynebacterium glutamicum # 45 784 1 700 712 501 47.0 1e-141 MAGSLASPHGCLIIEPSPTLGGMPTPPDLSAYRTPAAPGRPSRGLRLGLAAALAVVWFAV LGLGGPVFGRIGDVSSNDQATFLPASAESTRAGEEAAAFQDGEAVPAVVVGPASTADPAA AFPALADLAGRLGEVPGVADVAGPIPSDDGAAVQFLAFVDSSAGAERPVADVVADLREVV ADPAGADPALAGTVAADTEWHVGGPAGLVAELGGAFAGIDGLLLLVALVVVFVILVAVYR SVLLPVLVLLTAVAALCGAIVAVYGMALAGWIQLNGQAQGILSILVIGAATDYCLLLVAR HREELLVRADVGEALRAAVRGSFGAITASASTVALALLILMASDLNSTRSLGPVAATGVA FAWLAALTLLPALLRLTGRAAFWPTIPSPERARRRAERRAARGRAFTPPLDGAGRPVAGL EEDHGVWTRVGAVVARRPRLVWVATTVVLLALCGGLLQLRAGGVAQEDVLLGDSDARQAQ ALLSEHFDAGAGAPAQILAPAGDAEAVLAAVAEDPGVAEAEVTADAPGTAAGPPPGALEA EGGTGAASAPEPQPRVVDGRVLVSATLADPGESLAAQQTVARLRDRLADLPTSGEILVGG PAAQALDTNVTTQRDLRVVIPLILAMLLAILAVLLRSLLAPVLLVAATVVSFGAALGVSA LVFRHVFGFEDADPTVPLYGFVFLVALGIDYTIFLMTRAREETPRHGTRAGVLRALTVTG GVITSAGVVLAATFAALAVIPLMFMVQLAFIVAFGVLLDTLVVRTLLIPALVRDIGPRVW WPARAA >gi|289556211|gb|ADCD01000107.1| GENE 40 39191 - 39841 597 216 aa, chain - ## HITS:1 COG:Cgl2943 KEGG:ns NR:ns ## COG: Cgl2943 COG0783 # Protein_GI_number: 19554193 # Func_class: P Inorganic ion transport and metabolism # Function: DNA-binding ferritin-like protein (oxidative damage protectant) # Organism: Corynebacterium glutamicum # 7 168 2 163 165 153 48.0 2e-37 MAEKNAAEYTVPGLSLSTGRRTAEILQGRLHALNDLQLTLKHAHWNVVGPGFIGVHEMLD PQIELVRGMVDVLAERIATLGVSPAGTPGALVAARAWDDYTLGRATTLEHLAALDLVYDG VVTDHRAAIDATEDLDPVTQDILIDQVAQLELFQWFMRSFLTTDDGRLSSAGAATEAAAA GRVKDDQAAPAPQGARSKKSDAKKATASNAKKSKKK >gi|289556211|gb|ADCD01000107.1| GENE 41 40167 - 42026 1892 619 aa, chain + ## HITS:1 COG:ML2496 KEGG:ns NR:ns ## COG: ML2496 COG0443 # Protein_GI_number: 15828350 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone # Organism: Mycobacterium leprae # 1 602 1 602 620 720 67.0 0 MSRAVGIDLGTTNSVVAVLEGGDPVVIANAEGARTTPSVVAFSKGGDVLVGEVAKRQAVN NPERTFASIKRHMGTDWTTEVDGKKYTPQEISARTLMKLKHDAEEYLGEKVTDAVITVPA YFNDAERQATKEAGEIAGLNVKRIINEPTAAALAYGLEKGKEDELILVFDLGGGTFDVSL LEVAKDEDDFATIQVRATAGDNRLGGDDWDQRIVDWLLQQAKSKGADLSKDKIALQRLKE AAEQAKKELSSATSTNISLQYLSVTPEGPVHLDEHLSRAKFQDLTKDLLERTRKPFEDVI KEAGVKVSDIDHVVLVGGSTRMPAVSDLVKELTGGKEPNKSVNPDEVVAIGAAVQAGVLA GERKDVLLIDVTPLSLGIETKGGVMAKLIERNTAIPTKRSETFTTAEDNQPSVSIQVFQG EREFTRDNKALGTFELTGIAPAPRGMPQIEVTFDIDANGIVHVSAKDKGTGTEQSMTITG GSSLSKEDIDRMVKDAEAHADEDRKRREAADRRNQAEQSAYSVDKLLQDNADKLPEDVKT EVQADVDALKAALEKQDNDDEVAAAFEKLQASQVKIGEALYAQQGEESADAGAESAAPQG DDEDIVDAEVVDEDDEKKA Prediction of potential genes in microbial genomes Time: Thu May 26 08:28:32 2011 Seq name: gi|289556210|gb|ADCD01000108.1| Micrococcus luteus SK58 ctg1119142776921, whole genome shotgun sequence Length of sequence - 1733 bp Number of predicted genes - 2, with homology - 1 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 535 999 ## pYV0005 replication protein + Prom 997 - 1056 5.6 2 2 Tu 1 . + CDS 1094 - 1291 98 ## Predicted protein(s) >gi|289556210|gb|ADCD01000108.1| GENE 1 2 - 535 999 177 aa, chain + ## HITS:1 COG:no KEGG:pYV0005 NR:ns ## KEGG: pYV0005 # Name: not_defined # Def: replication protein # Organism: Y.pseudotuberculosis # Pathway: not_defined # 2 173 30 201 288 196 55.0 2e-49 STLPFNEKLMKASAGFTSKFVFSMFVAFARQRGVRHRMPRLDVRKAVESLLQGLCYHYDP LAGRVNVTLTTLAIECGLATESVNLNLAITRATRTLKLLEVLGLITYKTEFCKDLGCNFS TDITFTNDFFNAIEISERALEGVVRERAGWKNRERSKRGLPALSIEEHISEAWGAFA >gi|289556210|gb|ADCD01000108.1| GENE 2 1094 - 1291 98 65 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTSLAMACSHAAQRISSSHRSDGQKVKVGSLIDVHCSATCPGQRPETVRAIMDGVTTSFT SIKLL Prediction of potential genes in microbial genomes Time: Thu May 26 08:28:40 2011 Seq name: gi|289556205|gb|ADCD01000109.1| Micrococcus luteus SK58 ctg1119142780276, whole genome shotgun sequence Length of sequence - 3747 bp Number of predicted genes - 5, with homology - 5 Number of transcription units - 3, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 39 - 590 296 ## COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake 2 1 Op 2 . + CDS 657 - 953 75 ## Mlut_09270 tyrosine recombinase XerC subunit 3 1 Op 3 . + CDS 950 - 1696 613 ## COG0582 Integrase + Prom 1729 - 1788 1.8 4 2 Tu 1 . + CDS 1855 - 2358 388 ## Mlut_09280 hypothetical protein + Term 2413 - 2449 -0.7 5 3 Tu 1 . - CDS 2387 - 3631 1087 ## COG0304 3-oxoacyl-(acyl-carrier-protein) synthase Predicted protein(s) >gi|289556205|gb|ADCD01000109.1| GENE 1 39 - 590 296 183 aa, chain + ## HITS:1 COG:Cgl1982 KEGG:ns NR:ns ## COG: Cgl1982 COG0758 # Protein_GI_number: 19553232 # Func_class: L Replication, recombination and repair; U Intracellular trafficking, secretion, and vesicular transport # Function: Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake # Organism: Corynebacterium glutamicum # 4 182 216 389 394 107 40.0 1e-23 MAAGLLVSEMPPGASPTRYRFLQRNRVIAALAGAVLVVEARWRSGAQNTAGHAFGLGREV GVVPGPVTSPSSAGCHRLLQESPARLVTTEQEALALLGQGPARSGGTGGRTSARAAPESA VRPTDGLTMEEALVHEALPLRQAVPVDRITVSAGLALPTVLACLSRLQRAGLAERVEDRW RRG >gi|289556205|gb|ADCD01000109.1| GENE 2 657 - 953 75 98 aa, chain + ## HITS:1 COG:no KEGG:Mlut_09270 NR:ns ## KEGG: Mlut_09270 # Name: not_defined # Def: tyrosine recombinase XerC subunit # Organism: M.luteus # Pathway: not_defined # 1 91 1 91 346 139 90.0 4e-32 MAPSSSARPVPAPRAPSPRDTAWLEAFEEHLRHERNRSPQTARAYLADLRALIDHVAGTA GNSGTPALDDDAPVRRTPSAPDVLAELDIEDCAAGWRP >gi|289556205|gb|ADCD01000109.1| GENE 3 950 - 1696 613 248 aa, chain + ## HITS:1 COG:ML1600 KEGG:ns NR:ns ## COG: ML1600 COG0582 # Protein_GI_number: 15827839 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Mycobacterium leprae # 11 248 68 297 297 209 55.0 4e-54 MSGAGLARATLARRVAAVRTFTAWLRREGLRADDPALRLRSPRPEGTLPHVLQEQQARRL LAAAQERVDAAAAGDDPVAHALALRDAALLELLYATGARVAELSALDVDDLEAGRGVVRL TGKGDRQRTVPYGAPAGRALQAWQRLGRPRLARPDSGPALFLGARGGRLGVRQARTVVDR ALEGLGDTAARGPHALRHTAATHLLDGGADLRSVQELLGHASLRTTQVYTHVSIDRLREG YRQAHPRA >gi|289556205|gb|ADCD01000109.1| GENE 4 1855 - 2358 388 167 aa, chain + ## HITS:1 COG:no KEGG:Mlut_09280 NR:ns ## KEGG: Mlut_09280 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 1 167 1 167 167 303 98.0 2e-81 MTSTQTRGVVHILSAPTALCPHVEWALSSVLGPATSVEWEGQPVAPGQHRAEVRWTAPAG TGARLASALRGWPHLRFEITEEPSAGVDGSRWSHTPDLGIFHATTDVSGNIMVSEDRIRY AYEAGAGDPSVLMHELSLALGEAWDDELEPFRLAAAHANVRWLHRAV >gi|289556205|gb|ADCD01000109.1| GENE 5 2387 - 3631 1087 414 aa, chain - ## HITS:1 COG:BS_yjaY KEGG:ns NR:ns ## COG: BS_yjaY COG0304 # Protein_GI_number: 16078199 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: 3-oxoacyl-(acyl-carrier-protein) synthase # Organism: Bacillus subtilis # 3 412 4 409 413 323 44.0 4e-88 MTRTAVITGLGATTPIGGDVPTFWSHALQGVSGARTMEHDWVEKYELPVTFAAELAVPTS EVLSKVEQKRQDPATQMATVAAREAWKDAGLEGAEVDGDRLAVAFGTGIGGVWTLLDGWD TLRERGPRRVLPMTVPMLMPNGAAGALSLEFGARAGARTVVSACAAGTEALETALLLIRS GQADVVICGAAEAAVHPLPMAAFAAMQALSKRNDDPKAASRPYDVDRDGFVLGEGAGVMV IESEEHAKARGARVYAELAGAGVSSDSHHITAPEPEGLGATRAMRAALRSADITPEDVCH VNAHATSTPKGDAPEYLAMRAVFGDHLDQVQVSATKSQTGHLLGASGAIESILSVLAVHH GQAPVTINLDHQDPEIPLNVVTGSPARLPEGPRVAVKNSFGFGGHNAVAVFRSV Prediction of potential genes in microbial genomes Time: Thu May 26 08:28:46 2011 Seq name: gi|289556204|gb|ADCD01000110.1| Micrococcus luteus SK58 ctg1119142780279, whole genome shotgun sequence Length of sequence - 1187 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 198 - 803 873 ## COG1192 ATPases involved in chromosome partitioning - Prom 899 - 958 6.5 Predicted protein(s) >gi|289556204|gb|ADCD01000110.1| GENE 1 198 - 803 873 201 aa, chain - ## HITS:1 COG:HP1000 KEGG:ns NR:ns ## COG: HP1000 COG1192 # Protein_GI_number: 15645615 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Helicobacter pylori 26695 # 1 198 17 210 218 64 25.0 1e-10 MLVSILAYLLRAGKKCAVLECDDQNSIKDWLAERRDQGITPDVDYFECYTDIPERARKLA GRFDFVLLDTPGKKSAEFRKALTCADTLLSFIEPGAQVEINTLSQMVNDVKTAQSALNPT MQPWIVLNRCSTDPRDQGASELRQLLNDDPDWLPVTRQRLYSRKSYRQAYNAGQGVHEYQ DKSGNKGRGEIACLLNEIGLI Prediction of potential genes in microbial genomes Time: Thu May 26 08:28:50 2011 Seq name: gi|289556194|gb|ADCD01000111.1| Micrococcus luteus SK58 ctg1119142780285, whole genome shotgun sequence Length of sequence - 7880 bp Number of predicted genes - 9, with homology - 9 Number of transcription units - 3, operones - 1 average op.length - 7.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 1215 1200 ## COG1274 Phosphoenolpyruvate carboxykinase (GTP) 2 2 Op 1 13/0.000 + CDS 1459 - 1761 188 ## COG0831 Urea amidohydrolase (urease) gamma subunit 3 2 Op 2 17/0.000 + CDS 1782 - 2216 397 ## COG0832 Urea amidohydrolase (urease) beta subunit 4 2 Op 3 10/0.000 + CDS 2239 - 3954 1580 ## COG0804 Urea amidohydrolase (urease) alpha subunit 5 2 Op 4 16/0.000 + CDS 3968 - 4459 409 ## COG2371 Urease accessory protein UreE 6 2 Op 5 17/0.000 + CDS 4521 - 5177 618 ## COG0830 Urease accessory protein UreF 7 2 Op 6 9/0.000 + CDS 5260 - 5871 624 ## COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase 8 2 Op 7 . + CDS 5864 - 6718 550 ## COG0829 Urease accessory protein UreH 9 3 Tu 1 . + CDS 7115 - 7807 542 ## COG3376 High-affinity nickel permease Predicted protein(s) >gi|289556194|gb|ADCD01000111.1| GENE 1 1 - 1215 1200 404 aa, chain + ## HITS:1 COG:ML2624 KEGG:ns NR:ns ## COG: ML2624 COG1274 # Protein_GI_number: 15828418 # Func_class: C Energy production and conversion # Function: Phosphoenolpyruvate carboxykinase (GTP) # Organism: Mycobacterium leprae # 2 403 206 607 609 530 62.0 1e-150 VHFPEERSIWSFGSGYGGNALLGKKCYALRIASVMARDEAWLAEHMLILKLTNPEGRSYH ITGAFPSACGKTNLALIDPTIEGWKAETLGDDITWIRAGKDGEFRVINPETGYFGVAPGT GWSTNPNAMRAISKGNSIFTNVALTDDGGVWWEGMTDEVPEHLTDWRGNDWTPESGTPAA HPNSRFCTPIEQTDMLADEYRDPRGVKLDAILFGGRRKTTVPLVTEAFDWEDGILKGATL SSETTAAAAGAVGVVRRDPMAMLPFLGYDAGDYLAHWVRESGKADPEKLPRIYLVNWFRR SRDGGFAWPGFGENSRVLKWIVERLEGKAEAEETPIGLVPAAGSLDLSGIEVSAEDLEDA LKVDAAEWAEENEQIEQWLGRFGESLPQAIRDRFEAQKARFAQA >gi|289556194|gb|ADCD01000111.1| GENE 2 1459 - 1761 188 100 aa, chain + ## HITS:1 COG:Cgl0084 KEGG:ns NR:ns ## COG: Cgl0084 COG0831 # Protein_GI_number: 19551334 # Func_class: E Amino acid transport and metabolism # Function: Urea amidohydrolase (urease) gamma subunit # Organism: Corynebacterium glutamicum # 1 100 1 100 100 150 77.0 5e-37 MHLQPKDLEKLLVVVAADLARRRQQRGLKLNHPEAIAIITYELMEGARDGRSVADLMSWG STILTVDDVQEGVADMISMVQVEATFPDGTKLVTVHDPIR >gi|289556194|gb|ADCD01000111.1| GENE 3 1782 - 2216 397 144 aa, chain + ## HITS:1 COG:Cgl0085 KEGG:ns NR:ns ## COG: Cgl0085 COG0832 # Protein_GI_number: 19551335 # Func_class: E Amino acid transport and metabolism # Function: Urea amidohydrolase (urease) beta subunit # Organism: Corynebacterium glutamicum # 1 135 1 131 162 135 53.0 4e-32 MKPGEYVLADAPVVCNPGREAVELSVTNRGDRPVQVGSHFHFAEANRALDFDRQAALGCR LDIPAGTAVRLEPGDETTVKLIPLGGDRVVYGFRDMVDGPLDPHEAAGFHAAPAAPATPA RHESAAGDAPSPLKERAGFDNETR >gi|289556194|gb|ADCD01000111.1| GENE 4 2239 - 3954 1580 571 aa, chain + ## HITS:1 COG:Cgl0086 KEGG:ns NR:ns ## COG: Cgl0086 COG0804 # Protein_GI_number: 19551336 # Func_class: E Amino acid transport and metabolism # Function: Urea amidohydrolase (urease) alpha subunit # Organism: Corynebacterium glutamicum # 1 571 1 570 570 836 71.0 0 MSFEISREQYASLYGPTTGDAIRLADTELFAVVEEDLTTPGEEAVFGGGKVIRDGMGQNS QLVRDVGVPDLVITNVVVIDWTGIYKADIAVRDAHIVAIGKAGNPHTMDGVDIVIGVATD VISGEGKILTAGGIDTHVHFISPDQIETALSSGLTTMIGGGTGPSESSKATTITPGEWNI HTMLRSFEHWPMNFGLLGKGHGSSISPMAEQIRAGAIGLKVHEDWGATPSSINTALQVAD EYDVQVAIHTDTLNESGFVEDTRAAIDGRVIHTFHTEGAGGGHAPDIIELAQYPNILPAS TNPTLPYTTNTVEEHVDMLMVAHHLNADLPEDVAFADSRIRKETIAAEDVLQDMGIFSMT SSDSQAMGRVGEVLIRTWQVADSMKRQRGPLPEDEGTAGDNHRIKRYVSKYTINPAIAHG IADSVGSVEVGKFADLVLWEPQFFGVKPDLVIKGGQMVYGVVGDPNGSIPTPQPRWYRRS FGAYGQAVHTSAITFMSEASIRAGVPRALGLQKTIRAVHGIRDLTKADMRHNGETPRLEV DPETYEVRVDGEPVTCEPQDVLPMAQRYFLF >gi|289556194|gb|ADCD01000111.1| GENE 5 3968 - 4459 409 163 aa, chain + ## HITS:1 COG:SA2085 KEGG:ns NR:ns ## COG: SA2085 COG2371 # Protein_GI_number: 15927871 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Urease accessory protein UreE # Organism: Staphylococcus aureus N315 # 1 163 1 149 150 125 47.0 2e-29 MIVTEILGNVHDDAGAALVGDRHREQVHLEGSALVKRIQRLRTDHGNEYGLRLPAGSPDL RDGDILTVDDEGERGNAVIVRVLSTDVLVISARSLREMAFVAHSLGNRHLPAQFFDADGP FGRDAMVVQYDHTVEDFLRAHDVPHERQERVMDVPFRHAEHTH >gi|289556194|gb|ADCD01000111.1| GENE 6 4521 - 5177 618 218 aa, chain + ## HITS:1 COG:SA2086 KEGG:ns NR:ns ## COG: SA2086 COG0830 # Protein_GI_number: 15927872 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Urease accessory protein UreF # Organism: Staphylococcus aureus N315 # 1 218 9 229 229 178 39.0 7e-45 MLQLTDSALPTGAFSHSLGLETYMSDGRVEGEEDFAAWLEMFVEQQLTFTDALAVRLVYA AEDFDAVANLDELVTAQALPAQIREAGRTMGRRLLRIGAPAYPGDWVRRYHEGVEAGTLD AHQALVWGVIAREIGVPVEEAVAAHLYASVMSLTQNAVRGIPLGQDAGQRVVRRAQEWVL RAVEVSRDLDPDDLGAIAPGLEIAQMRHERQRARMFMS >gi|289556194|gb|ADCD01000111.1| GENE 7 5260 - 5871 624 203 aa, chain + ## HITS:1 COG:Cgl0089 KEGG:ns NR:ns ## COG: Cgl0089 COG0378 # Protein_GI_number: 19551339 # Func_class: O Posttranslational modification, protein turnover, chaperones; K Transcription # Function: Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase # Organism: Corynebacterium glutamicum # 1 202 1 202 205 325 80.0 4e-89 MDPVIIGIGGPVGAGKTQLVERLTRAMSEEISMAAITNDIYTIEDAKILSRTSVLPEERI VGIETGGCPHTAIREDTSMNEAAIEQLKARFPDLQVIFVESGGDNLSATFSPELVDFSIY IIDVAQGEKIPRKAGQGMIKSDLFIVNKTDLAPYVGADLSVMESDSKVFRKDRPFAFTNL KTDEGLDVVMDWIRNDVLMADLG >gi|289556194|gb|ADCD01000111.1| GENE 8 5864 - 6718 550 284 aa, chain + ## HITS:1 COG:Cgl0090 KEGG:ns NR:ns ## COG: Cgl0090 COG0829 # Protein_GI_number: 19551340 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Urease accessory protein UreH # Organism: Corynebacterium glutamicum # 7 284 8 283 283 218 44.0 1e-56 MAEGLTGELRLRVAVRGGRSVAARQFHQGALRVLRPHYLDRSGQVSYTVINPGGAYFGAD RYGIEVDVEEDASLLLTTQSATKVYRTPQGPARQDMTLRLGPGAVLEYVPDQLIVYRGGS YLQDTRVVMDPSASVLLAEVITPGWSPTAEPFRYDRLGMRTEVTVDPGGDPRRLVVDQLR LHPAEGQGLTGMGMLEGHSHTGQLLVADRRLDADLVAELTEVVDASDTVSGITRAGTGRA HGVDCVSVRSLAASTGRITALHHALADLLRARWRDQSPLALRKY >gi|289556194|gb|ADCD01000111.1| GENE 9 7115 - 7807 542 230 aa, chain + ## HITS:1 COG:MT2923 KEGG:ns NR:ns ## COG: MT2923 COG3376 # Protein_GI_number: 15842397 # Func_class: P Inorganic ion transport and metabolism # Function: High-affinity nickel permease # Organism: Mycobacterium tuberculosis CDC1551 # 7 223 137 360 372 122 37.0 6e-28 MQGAFADGSPANRVLGLIGTGVSGGYLLLLGVYNGVSALRLRRASAVRRPGPAEEPTGLV TRLLRAPLRRVRSPRDIFVIGFLFGLGFDTATTIGLLLLAVSVSAAGIPLVTLLALPVAF TAAMTLCDTTNGLGMMRLYSSALQQSERRRRFNLVVTSVSAVSALFIAVLTLGAFVHELL GLTDPVTTWLAEVDLGHAGLALVGVFALIWLCAALLEHRRGRVRPVGDGA Prediction of potential genes in microbial genomes Time: Thu May 26 08:28:50 2011 Seq name: gi|289556193|gb|ADCD01000112.1| Micrococcus luteus SK58 ctg1119142776928, whole genome shotgun sequence Length of sequence - 1060 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 1058 523 ## COG0550 Topoisomerase IA Predicted protein(s) >gi|289556193|gb|ADCD01000112.1| GENE 1 3 - 1058 523 351 aa, chain - ## HITS:1 COG:HI0444 KEGG:ns NR:ns ## COG: HI0444 COG0550 # Protein_GI_number: 16272392 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Haemophilus influenzae # 9 248 405 623 651 127 32.0 3e-29 STCPDIAKMSRDELTVYTAIAKQYLCQFLPEKKWKQATVDFGIAGYAFRASARMTTFPGW TSLVEETKEIEVINTDDADDESDILFNRLSSLQQSDTGHCDAVTVSPKKTKPQPLYTIAS LLEDLQRVARYVKDPRIKALLISRDKNAAEGENGGIGTPATRGSMFETLEKRGYYTIEKN KLIPTELGISFIAALPPIAYEPDMTALWHEQQQQIEKGQLTCAAFLDELELFIADQLKNI DVSNLAALVTSTQSGAQADNRRERLDVPCPACGREIIVTPKTFSCSGCAFKIWITLAGKA LTKTQVQTLIKKGKSSEIKGFTSTKTGKTFSAFVCLADKKTGKLSFEFPPR