Prediction of potential genes in microbial genomes Time: Sun Jul 17 07:25:34 2011 Seq name: gi|333608975|gb|AFDH01000001.1| Paenibacillus sp. HGF7 contig00199, whole genome shotgun sequence Length of sequence - 63950 bp Number of predicted genes - 58, with homology - 54 Number of transcription units - 38, operones - 16 average op.length - 2.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 65 - 220 77 ## + Prom 1116 - 1175 6.1 2 2 Op 1 . + CDS 1353 - 3329 2103 ## COG0457 FOG: TPR repeat 3 2 Op 2 . + CDS 3404 - 3943 675 ## ABC0637 hypothetical protein + Term 4025 - 4068 11.0 - Term 4013 - 4055 12.4 4 3 Op 1 . - CDS 4065 - 4856 240 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 - Prom 4903 - 4962 1.6 5 3 Op 2 . - CDS 4969 - 6006 958 ## COG1312 D-mannonate dehydratase 6 4 Tu 1 . + CDS 5951 - 6112 60 ## + Term 6237 - 6274 3.3 7 5 Tu 1 . - CDS 6170 - 6877 789 ## COG1802 Transcriptional regulators - Prom 6909 - 6968 5.3 8 6 Tu 1 . - CDS 7376 - 8338 1063 ## COG3458 Acetyl esterase (deacetylase) - Prom 8491 - 8550 4.8 + Prom 8437 - 8496 5.8 9 7 Tu 1 . + CDS 8540 - 9001 452 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - Term 8994 - 9039 10.1 10 8 Tu 1 . - CDS 9050 - 10204 771 ## COG0673 Predicted dehydrogenases and related proteins - Prom 10253 - 10312 6.8 + Prom 10196 - 10255 5.0 11 9 Op 1 . + CDS 10349 - 11455 931 ## COG2207 AraC-type DNA-binding domain-containing proteins 12 9 Op 2 . + CDS 11488 - 11967 601 ## COG2606 Uncharacterized conserved protein + Term 12108 - 12134 0.1 - Term 12015 - 12054 10.4 13 10 Tu 1 . - CDS 12123 - 12821 803 ## COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family - Prom 12959 - 13018 5.0 + Prom 12925 - 12984 5.2 14 11 Tu 1 . + CDS 13075 - 13620 645 ## COG0386 Glutathione peroxidase + Term 13683 - 13716 5.1 - Term 13611 - 13648 4.9 15 12 Op 1 . - CDS 13688 - 14356 854 ## COG5018 Inhibitor of the KinA pathway to sporulation, predicted exonuclease 16 12 Op 2 . - CDS 14370 - 15119 731 ## COG1234 Metal-dependent hydrolases of the beta-lactamase superfamily III - Prom 15238 - 15297 3.0 + Prom 15493 - 15552 4.4 17 13 Tu 1 . + CDS 15649 - 17553 1624 ## COG0642 Signal transduction histidine kinase + Term 17664 - 17715 -0.1 - Term 17373 - 17404 3.4 18 14 Op 1 . - CDS 17569 - 17808 219 ## GYMC10_1416 hypothetical protein 19 14 Op 2 . - CDS 17880 - 18821 942 ## GYMC10_1417 hypothetical protein - Prom 18846 - 18905 6.9 + Prom 18902 - 18961 3.7 20 15 Tu 1 . + CDS 18981 - 20984 1973 ## COG0840 Methyl-accepting chemotaxis protein + Term 20998 - 21043 7.7 + Prom 21043 - 21102 4.2 21 16 Tu 1 . + CDS 21130 - 22842 1522 ## COG3829 Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains + Term 22887 - 22928 8.1 + Prom 22923 - 22982 5.0 22 17 Op 1 4/0.125 + CDS 23050 - 23964 933 ## COG0506 Proline dehydrogenase 23 17 Op 2 . + CDS 23996 - 25567 1748 ## COG1012 NAD-dependent aldehyde dehydrogenases + Term 25648 - 25695 12.5 + Prom 25686 - 25745 2.9 24 18 Op 1 . + CDS 25784 - 28156 1533 ## GYMC10_1407 hypothetical protein 25 18 Op 2 . + CDS 28229 - 28999 579 ## COG1051 ADP-ribose pyrophosphatase 26 18 Op 3 1/0.188 + CDS 29066 - 29752 689 ## COG3201 Nicotinamide mononucleotide transporter 27 18 Op 4 . + CDS 29755 - 30777 770 ## COG3172 Predicted ATPase/kinase involved in NAD metabolism + Term 30793 - 30833 7.4 - Term 30785 - 30817 3.2 28 19 Tu 1 . - CDS 30857 - 31249 291 ## COG0346 Lactoylglutathione lyase and related lyases - Prom 31270 - 31329 5.2 + Prom 31346 - 31405 7.0 29 20 Op 1 9/0.000 + CDS 31486 - 32373 1000 ## COG2822 Predicted periplasmic lipoprotein involved in iron transport 30 20 Op 2 1/0.188 + CDS 32370 - 33668 1043 ## COG2837 Predicted iron-dependent peroxidase 31 20 Op 3 . + CDS 33649 - 35499 1562 ## COG0672 High-affinity Fe2+/Pb2+ permease + Term 35506 - 35558 9.0 - Term 35584 - 35618 1.0 32 21 Tu 1 . - CDS 35690 - 36685 1012 ## COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component - Prom 36742 - 36801 6.0 + Prom 36691 - 36750 7.4 33 22 Tu 1 . + CDS 36948 - 38336 1617 ## COG4247 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) + Term 38346 - 38408 4.2 + Prom 38466 - 38525 6.5 34 23 Op 1 5/0.062 + CDS 38589 - 39362 224 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 35 23 Op 2 . + CDS 39388 - 40443 1037 ## COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases + Prom 40502 - 40561 2.1 36 24 Tu 1 . + CDS 40616 - 40927 421 ## Pjdr2_3332 hypothetical protein + Term 40970 - 41005 4.2 + Prom 40999 - 41058 2.5 37 25 Op 1 . + CDS 41108 - 41653 717 ## COG0225 Peptide methionine sulfoxide reductase 38 25 Op 2 . + CDS 41759 - 42469 904 ## COG0813 Purine-nucleoside phosphorylase + Term 42546 - 42585 8.3 - Term 42536 - 42571 5.0 39 26 Op 1 18/0.000 - CDS 42692 - 43198 563 ## COG1846 Transcriptional regulators 40 26 Op 2 . - CDS 43217 - 44425 1028 ## COG0477 Permeases of the major facilitator superfamily - Prom 44621 - 44680 5.3 + Prom 44573 - 44632 1.9 41 27 Op 1 . + CDS 44661 - 46355 1255 ## BBta_p0030 hypothetical protein + Prom 46358 - 46417 2.1 42 27 Op 2 . + CDS 46451 - 47419 880 ## COG1041 Predicted DNA modification methylase + Term 47530 - 47587 10.8 + Prom 47850 - 47909 7.9 43 28 Op 1 . + CDS 47950 - 48777 525 ## COG1082 Sugar phosphate isomerases/epimerases 44 28 Op 2 2/0.125 + CDS 48794 - 50137 924 ## COG0531 Amino acid transporters + Prom 50146 - 50205 6.2 45 29 Op 1 3/0.125 + CDS 50242 - 51255 895 ## COG2222 Predicted phosphosugar isomerases + Term 51264 - 51297 5.1 46 29 Op 2 1/0.188 + CDS 51316 - 52098 654 ## COG0524 Sugar kinases, ribokinase family 47 29 Op 3 . + CDS 52164 - 52892 589 ## COG2188 Transcriptional regulators + Term 52911 - 52947 3.2 - Term 52882 - 52912 1.6 48 30 Tu 1 . - CDS 52957 - 53691 838 ## COG0778 Nitroreductase - Prom 53749 - 53808 3.9 49 31 Tu 1 . - CDS 53811 - 54089 69 ## - Prom 54322 - 54381 2.5 + Prom 53728 - 53787 5.0 50 32 Tu 1 . + CDS 54004 - 54459 296 ## Pjdr2_1649 hypothetical protein + Term 54464 - 54491 -0.1 51 33 Op 1 . + CDS 54662 - 55207 374 ## COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 52 33 Op 2 . + CDS 55194 - 56606 1049 ## + Term 56625 - 56671 8.7 - Term 56615 - 56657 7.0 53 34 Tu 1 . - CDS 56711 - 57352 181 ## PROTEIN SUPPORTED gi|149914418|ref|ZP_01902949.1| 50S ribosomal protein L33 + Prom 57694 - 57753 4.0 54 35 Tu 1 . + CDS 57824 - 60160 1863 ## COG0210 Superfamily I DNA and RNA helicases - Term 60506 - 60542 -0.9 55 36 Tu 1 . - CDS 60550 - 61056 584 ## COG4297 Uncharacterized protein containing double-stranded beta helix domain - Prom 61160 - 61219 3.0 - Term 61163 - 61217 14.5 56 37 Tu 1 . - CDS 61275 - 61994 995 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - Prom 62174 - 62233 4.5 + Prom 61993 - 62052 3.6 57 38 Op 1 . + CDS 62214 - 63059 677 ## COG1216 Predicted glycosyltransferases 58 38 Op 2 . + CDS 63138 - 63948 634 ## PPE_03798 hypothetical protein Predicted protein(s) >gi|333608975|gb|AFDH01000001.1| GENE 1 65 - 220 77 51 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MMGEGLEQGEPRSFRLTAVLLEPSSDTELLKLLKAAGNQSTEEDSALDVLA >gi|333608975|gb|AFDH01000001.1| GENE 2 1353 - 3329 2103 658 aa, chain + ## HITS:1 COG:MA4306 KEGG:ns NR:ns ## COG: MA4306 COG0457 # Protein_GI_number: 20093095 # Func_class: R General function prediction only # Function: FOG: TPR repeat # Organism: Methanosarcina acetivorans str.C2A # 77 605 442 1002 1079 88 22.0 4e-17 MKLFNGYYIKKGRQYIKEGNFAKALEYYEKADYGKLDTAEKIRVAEVYHECGRTEHALSL LGDIIGRVSSDQAHERRAHILQEIGREDEAMRDLDEAIRLNPEPYMYWYTRGIWHKDFHN YEAAAADLEECVKRESEDSVVSSYYELGMCYWRMEDYGRAEETFRKVLSYPDRDIPIFHY RLGKTLENLGRLEEAAASMRKAVDQVIEWEYISDKGQRLVLTRTGYGAGAFRIFMEEAER TCGFRKDLAGLYAGLKRYGEALEEINRALEAYPDNDGLHLQRVAVYRSSGRWEDAERELD VLEKGRDVEERVLWMERVLLYRAQNRDSEAVPLLHKLYEQDSGNPIVCYWLADAYLDLGQ TEKALEFNKRLLELEDDDPLNEQQRGLILEETGAYGQAASAYGRAIAMQDRADFRMKRSY AYFMDSRFDEALMDLHHAAELEPGISEGAGYHHAMGRVLEEMGHLDMAIASFTKAIDIQP EHAAYYESRAKCYLTLRELEKAELDCIVGYDKDASYTDLISLRGNVLYLKKEYAESRNLA SQFSRLHPDSPSAFFNLGIVCFKLEGEEDAARNAFDQALALDPSYGACYIYKAYLDYGRL DFREAIENLANWSLFTFPELSLEERLEHLEELDGLNETVLEGAARRITELYQGHVYLS >gi|333608975|gb|AFDH01000001.1| GENE 3 3404 - 3943 675 179 aa, chain + ## HITS:1 COG:no KEGG:ABC0637 NR:ns ## KEGG: ABC0637 # Name: not_defined # Def: hypothetical protein # Organism: B.clausii # Pathway: not_defined # 6 178 8 184 185 122 35.0 9e-27 MQPVHQPNDLIIYPSTKKTIGLVLAALVFVVLGVVFIGAGQSEEERSLGLVGIGAVSVVF FGACLVYLVYRLFNRKPSLIVNDEGIVDHSSAIGGGELRWADIEEIMLYDYMGQRFIGIR LHDTETYLARQSGFKKTLMKANQGLVQATVNITQTAVKMPLEELYGLMMEKWERDRASA >gi|333608975|gb|AFDH01000001.1| GENE 4 4065 - 4856 240 263 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 9 258 4 240 242 97 29 2e-19 MPDKRLEGKVAVVSGGGSGIGKASAIRLAQQGAKVVMLDRTPDNAEKTKKTIESAGGEAL VIECDISKPEMIEQGFREAASRFGGIDIVFANAGINGTKAPIETLQIDEWEQTIHINLRG TFATVKYAIPHLKEKGGSIIITSSINGNRVFSNIGFSTYATTKAGQVAFMKMAALELARY KIRVNAICPGAIDTNIDDNTYPTEDLKEVQIPVEFPEGDHPLKGAPGKPEQVADLVLFLA SDESSHVTGTEIYVDGAESLLRG >gi|333608975|gb|AFDH01000001.1| GENE 5 4969 - 6006 958 345 aa, chain - ## HITS:1 COG:BH0706 KEGG:ns NR:ns ## COG: BH0706 COG1312 # Protein_GI_number: 15613269 # Func_class: G Carbohydrate transport and metabolism # Function: D-mannonate dehydratase # Organism: Bacillus halodurans # 1 344 1 344 345 516 68.0 1e-146 MKMTFRWFGENDPVTLTNIRQIPGVTGIVSAIYDVPVGEAWPLDKITRLKQTIEDHGLRL DVIESVPIHEDIKLGLPSRQAYIDNYKTTLRNLAKAGIDTVCYNFMPIFDWTRTSLNYEL EDGSNALIYEEEIAQKMNPLTGELKLPGWDTSYTDDQLKTLFDHYKNVDEEKLWSNLAYF IREIMPVADEEGIKMAIHPDDPPWPIFGLPRIITNRENLDRFLGLYDSRNHGLCMCSGSL GAHKDNDFPAMLRHFGHQKRIHFVHARNIKRIGDKSFCETSHLSEHGSVDMVEVMKALKK VGFEGPLRPDHGRMIWGETGKPGYGLYDRALGIVYLNGIREALNH >gi|333608975|gb|AFDH01000001.1| GENE 6 5951 - 6112 60 53 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFVKVTGSFSPNQRKVIFKVIILPISFEAGAPVLGAAGISRFILPTLHAVYGM >gi|333608975|gb|AFDH01000001.1| GENE 7 6170 - 6877 789 235 aa, chain - ## HITS:1 COG:ECs2149 KEGG:ns NR:ns ## COG: ECs2149 COG1802 # Protein_GI_number: 15831403 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli O157:H7 # 14 235 11 227 228 110 27.0 3e-24 MASTPQIPLITSGKSLGEQAYEALRDSIITLKLEPGQPIFESEIADTFQISRTPIRDAFQ LLVTEHLIEVLPQRHKKIARISESKVKESSFVRLSLESSAFKLAAGSWDSSEKFVQAERQ ISRILREQSEAAEHQDVIQFLQLDEAFHKCILELTGNATLLEVVYHMRGHLNRLRYLAMK ELVLTRKLVEEHLELFDSLKKRDETRTVQLLEQHLGSLDHEIPQLREQFPHYFTD >gi|333608975|gb|AFDH01000001.1| GENE 8 7376 - 8338 1063 320 aa, chain - ## HITS:1 COG:TM0077 KEGG:ns NR:ns ## COG: TM0077 COG3458 # Protein_GI_number: 15642852 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acetyl esterase (deacetylase) # Organism: Thermotoga maritima # 8 299 8 304 325 203 37.0 5e-52 MNAVEKRIHTLHQYKPALTLDPSAADHFWDKKLDLFKSKPLNAHVERRDSLMNGVDTYHV TYEGFDETPIHGWFLVPSFLQKKSYPCLVMFPGYTADKGLPERYAAWLLQGFAVFAVDVR GQGGETGNRLDYDGGTSTGWMTQNILDKDRCYYMAVTLDAYKAVEWAAGRPEVRTSKIAV VGGSQGGGLSLITGALHEKVSLIVADIPNMCHMDFGVLNSVGSLKEAADFIKRNPDRLEP VFETLAHFDMMNLAHRIRVPVRMTVGLKDMVCWPESIFAAYNRIEGDKHIDVHPFSGHEV SERQQQEHRRYLAEWAREAQ >gi|333608975|gb|AFDH01000001.1| GENE 9 8540 - 9001 452 153 aa, chain + ## HITS:1 COG:BS_yhfO KEGG:ns NR:ns ## COG: BS_yhfO COG0454 # Protein_GI_number: 16078095 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Bacillus subtilis # 6 150 1 142 149 68 32.0 5e-12 MTTDSVSIRPATAEDTRELHDLMIQYIVDFYKRPRPDERELDKLIDHLRENPSAGLQFVA ERDGTLVGFATLYFSFSTLQVKRTAVLNDLFVDASARGHKVGERLFRSCLSYIREQGFAY MTWETAKDNTAAQSLYNKMGGHVSTDWLVYEIE >gi|333608975|gb|AFDH01000001.1| GENE 10 9050 - 10204 771 384 aa, chain - ## HITS:1 COG:SMc04129 KEGG:ns NR:ns ## COG: SMc04129 COG0673 # Protein_GI_number: 15963876 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Sinorhizobium meliloti # 54 381 60 414 433 107 28.0 5e-23 MNLGIIGYGDRISHVASEIMKEDPDCKITAITDIRLGELREQFREKGREDISFYASADEM LGNERLDGVLIGTRCSLHTPMALKVLSRHLPLYLEKPVATTMEDLLRLKQGYEASRSPVV VSFPLRVTSIVNFVREIIDSGKIGTVEHVQAVNNVPYGAVYYQNWYRDEAETGGLFLQKA THDFDYINSVLRLAPTDVAAMTSKQIFKGTKPAGLKCADCEEKRTCPDSTAFPSKDIPET WEYCLYAEDTGNEDSGSALIRYESGMHVSYSQNFFARRAAASRGARFLGYKGTVEFDFYT SQVKVFMHHTPRVETYEIGAGDNHFGGDSALAANFAGLMRGAASPVATMDDGLLSALMCV QARESAASGTFRPIRYDTPEICAP >gi|333608975|gb|AFDH01000001.1| GENE 11 10349 - 11455 931 368 aa, chain + ## HITS:1 COG:CAC1333 KEGG:ns NR:ns ## COG: CAC1333 COG2207 # Protein_GI_number: 15894612 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Clostridium acetobutylicum # 69 358 1 285 286 73 23.0 7e-13 MEEKKKEPCEKPGAREVQEALEKQGDHGTSENLEQESEDQEKQAQEAQEASTLELQEVPA SGETREARLNRMQRTYLEQVIRIGSIITMYYFEHGKDYVFRGERHNFWEFLYVDKGEIEV VTDDAGHVLKQGMAIFHEPNEFHSFRAAPGRAPNVIVLTFDCDSPAMRAFAGGVLRLEDE ERDLLARIVQEGENAFEFPFEYPLKRRERALPGSEQLLRCYLEAFLIRLLRQAPFDEKAS PAQLSSPARQKNQEELAAKVIAFMEANVESPVTLDEISRHFHIGKTLLKESFKAQTGTTI MKYWSRIKIGQAKLLIREEACNFTEIAGRLGFGSVHHFSKTFKKASGMSPSEYARSVKAR MGTGDGRT >gi|333608975|gb|AFDH01000001.1| GENE 12 11488 - 11967 601 159 aa, chain + ## HITS:1 COG:lin0783 KEGG:ns NR:ns ## COG: lin0783 COG2606 # Protein_GI_number: 16799857 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 6 158 4 156 158 164 55.0 5e-41 MGTQAKTNACRMLDKLGITYTLHEYEWDEDQLDAGTVAGKVGIGIGSMYKTLVLRGDKTG VLLACIPGDKELHLKALASVSGNKKVDMAPVKELQALTGYIRGGVSPLGMKKNYPLYLER AALATEPVSISAGRRGLQIFLSGKDLAAAADAIPADITH >gi|333608975|gb|AFDH01000001.1| GENE 13 12123 - 12821 803 232 aa, chain - ## HITS:1 COG:CAC2769 KEGG:ns NR:ns ## COG: CAC2769 COG0652 # Protein_GI_number: 15896024 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family # Organism: Clostridium acetobutylicum # 61 232 2 173 174 232 66.0 5e-61 MTGKRKGFTGLLLLVMALLVIAAGCGKAKTDGSGTATPSPTPSPTAAGSAGGSEPPKTDG KNPVVTIEMDNGKIIKAELYPEVAPNTVNNFISLIKKGFYDGKIFHRVIPGFMIQGGDPD GTGAGGPGYGIKGEFTSNGFKNELKHTRGVLSMARAQDPDSAGSQFFIMVADSTHLDGQY ASFGKVTEGMEAVDEIVNQPTEANDRPKTPPAMKKVTVDTLGVDYPEPKTIK >gi|333608975|gb|AFDH01000001.1| GENE 14 13075 - 13620 645 181 aa, chain + ## HITS:1 COG:CAC1549 KEGG:ns NR:ns ## COG: CAC1549 COG0386 # Protein_GI_number: 15894827 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutathione peroxidase # Organism: Clostridium acetobutylicum # 1 181 1 181 181 246 65.0 2e-65 MSVYPYSARSIRGTETKLEEYKGKVLVIVNTASQCGFTSQYADLQKLYEKYRDQGLVVLG FPCNQFGEQEPGTNEEVNTFCQLNYGVTFPLFEKIDVRGEEKHPLYAYLTEQAPFEGFDL NHPSGKMLNAFLSEKQPHLLQGNDVKWNFTKFLIDRDGNVVKRFESGVDPLDMQPAVEAV L >gi|333608975|gb|AFDH01000001.1| GENE 15 13688 - 14356 854 222 aa, chain - ## HITS:1 COG:PA1575 KEGG:ns NR:ns ## COG: PA1575 COG5018 # Protein_GI_number: 15596772 # Func_class: R General function prediction only # Function: Inhibitor of the KinA pathway to sporulation, predicted exonuclease # Organism: Pseudomonas aeruginosa # 4 172 5 175 183 73 33.0 3e-13 MKVIVYDLEMTVTRKKIHVSEIIEIGAAAVEITDGKPAVTGTFQSFVKPDRSPVISASTQ ALTGIKQSELQSAEPWPLVLERLLEWIGDGDYYLCAWGPDDLIQLGSDCRMHGVKTDWIC NHNNLQKLMAGLVQQEKQQQMGLKTALEYWNIPFDGSHHRALDDAMNTAKLFIHLHDRLV LERNQAGDLPLYTTEVVYKTGDSFTNNPFEKLALFAQKEPTT >gi|333608975|gb|AFDH01000001.1| GENE 16 14370 - 15119 731 249 aa, chain - ## HITS:1 COG:MA2375 KEGG:ns NR:ns ## COG: MA2375 COG1234 # Protein_GI_number: 20091207 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily III # Organism: Methanosarcina acetivorans str.C2A # 1 249 1 251 251 67 27.0 3e-11 MDVLILGSASASGSRERDNTYLLLQHEEGNWMIDVGGNPLGKLKQAEIPLQSIQGVILTH FHIDHIFGLPSLLWGMWLGKRKEPLIICCPQDHKDQLGDILRAYRTDEWPIGFEIKVQPF DCAEPGTLFVQGDMTVSVFTSLHSGSTSGIRVACGDKVLVYSADTAPSEWIRSQPRIDVL IHEATQARGDMSIHTSLEGILTFYPVDRIPQVIAIHLTDDEPYEEVLAQYKKTGTPGVLL AHDMMRVSL >gi|333608975|gb|AFDH01000001.1| GENE 17 15649 - 17553 1624 634 aa, chain + ## HITS:1 COG:BS_kinB KEGG:ns NR:ns ## COG: BS_kinB COG0642 # Protein_GI_number: 16080197 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Bacillus subtilis # 400 631 190 425 429 185 44.0 3e-46 MTKSRATAFLAFVFTGIVLLTLLFVPATARGQSPLDTIKITEWAYKWDSQGTGPDGTRTP AGTDGWTPANEKGDMPVKPEGVTALWVKIELPRLEWDEPGMLIDKLYGHRIEVFTDERRI YKAGHTYVYDKNRLLIPLSDNESGKTVYIHIETDSDRIGLQKNVKIGDYQALLPGYVKSN LTDVLLGCAFVFIALLMLICTVFLNRGQLAKWLSLSLVILAIGMLMIGSSQFTYTFFEDQ GKWIESLFDLALLVFLPTLTLYFEQILGHGTWSMLTKYRWFQIGFSVLCVLFQLVNHLAS YRYDKAYYFVTVMLLGLTMLIQFVLLIGMAITHAVKGSKDGITLTTGIGLFAASGVVDLL VFYVKNEQYEFIYWKFGIVCFVTSLIIILGRGFARDHEKIVRYSKELVMYNNELQRAEKM EIISDLAASVAHEVRNPLQVTRGFLQLAAEKLGQKEKGYMNMAIEELDRASNIITDFLTF AKPQLEHITSLNICQELKQIEGILVPLANLQGGVITLEVPEDLYIEGNSSKFKQAFINII KNSIEALDGQGQIQIWAYKEKNEVWIHIRDNGEGMETKELSKLGEPYFSTKTKGTGLGLM VTFRIIEVMHGRLEFKSEKGVGTEAIVRFPSIPG >gi|333608975|gb|AFDH01000001.1| GENE 18 17569 - 17808 219 79 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_1416 NR:ns ## KEGG: GYMC10_1416 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 79 1 79 79 75 39.0 5e-13 MSAEEILKNQIIEKAWADPEFKKALMNDPRGALKQAFDIELPESADVKVLDEAPGQYFLV IPPNPAEVLSAKSDANSVW >gi|333608975|gb|AFDH01000001.1| GENE 19 17880 - 18821 942 313 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_1417 NR:ns ## KEGG: GYMC10_1417 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 312 1 316 317 282 45.0 2e-74 MKWFTDYTEELELVFEEAVRRVAAFPAPLHTAGLDYLDKFHPLKKDSTKNYICYLLPFWL REQTKLPSDMYRTLSLANVFVMLHFFVQDDFMDTDTGADERRLMLPLSNLFQAEYSRLYR ECFPADSPFWAYADAYLRQWAECVAKENEADYFRKDPVRIAYKAAPVKLASTGALLLSGQ EELIGPFSRQTDHTLLALQMADDWADWREDLETGSYNCLLSLIRARRGLKPEEPLTEDNV KQAVFIHGCLRDYAEAASASAGARTGLFHAPHMDAFHQSLLDDLLAEASRIDKERGLLEL GGFAYLLSKRNKF >gi|333608975|gb|AFDH01000001.1| GENE 20 18981 - 20984 1973 667 aa, chain + ## HITS:1 COG:BH3915 KEGG:ns NR:ns ## COG: BH3915 COG0840 # Protein_GI_number: 15616477 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Methyl-accepting chemotaxis protein # Organism: Bacillus halodurans # 10 667 8 667 667 271 32.0 4e-72 MNQVWKKMKLKNSLKTKLIAAFLLLSLVPLVVTSVVLLNMAKTNTENEIAYNMTNLAKSN ADSVDYWMRQRISLVEEMIKKHPEMAKGEKTQILSVLKTVGEIDKEFEYYAYVEKDGTST NTAGLVSKVGERDYFKKMAETKKTVVSEMLINSKTGKPVIVIAVPIVEGGEFLGAIHAVI NPDILQRLIEGVKVGESGFGYLISGEGTYLTHPDKARIGKKLDEVMQSSELKKFKEQVLV QNDGEVDYKSAENIDRTASYHTVSATGWKMIVLTNDAEVLEALQKFARTTTIIILIVCIL VLLISWQIGRVAVAPMLHLSEVLKKVAGGDLTPRLKVTSKDEIGDIAQNTNKMLESMSEI IGDVSLMAEQVAASSEELTASSAESVEASKHVGQSIEEIVRGSETQVQSAEQSSKAMEEM AGGIQRIAESSSTVADTTNRTAAEAKQGNNAIQMAVRQMDSIRDSVTVTSGELKTLGEHS RQIGDIVDVITQIASQTQMLSLNASIEAARAGEHGRGFAVVAGEVKKLAEQSAKSAAHIT ELIAHIRTSTDNAITTMDRGVAEVGKGAEIIHIAGIVFQDIYTAVQNVSDQIREVSAATE QMSAGSEEVSASMMEMLQISQGSSDSAQMISAASEQQLASMEEVSSASESLSRMAQSLQE SLSKFKI >gi|333608975|gb|AFDH01000001.1| GENE 21 21130 - 22842 1522 570 aa, chain + ## HITS:1 COG:BH2739 KEGG:ns NR:ns ## COG: BH2739 COG3829 # Protein_GI_number: 15615302 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains # Organism: Bacillus halodurans # 82 567 31 525 526 382 41.0 1e-105 MFGLEHLQLDTSFLALEGECPVSQAKALLEQVRFVIVDTAPGAAYIISYQEAKFLDALHP DMTIDEWVRRTGWPCSAACPKSRLGELQTDWQKPILVLGEDSRKLGIVTAEAMMNCLQQE KRQLVSYLDTLVETVNDAVTAVDREGRVIYWNRTAEQVYGIGKQDIIGRTIGEHFEKESI MLHQILDEGRTIRQVYHQPAPDTHVLISASPIVENNQIIGGIATEQDITRIVRLNEELYS AIPLRIEQDKPFSSIIGMGHDIKRSLEVARKFARFSTPVLLVGEPGSGKEMLAQAIHYSS ERKDAAFVSLHCGAIPGGLLETELFGYQGAAFTSGEDQGKEGKLEFADGGTLFLEEVGEI PLDIQLKLSHYLRDKSFQRVGGEESIRTDARIIATTHTSLQPLMEQGLFLEDLFYQLNVM SIEIPPLRERREDIPELVQAFIREFTEHYHKPVPKVEPDVLNVLMNHDWPGNIRELRNVM ERAVILCEGDTITGVHLPPGLSSKMQHAGFFADREETGAPKPHSAFQQEDHLIEEALRRA YGNKSAAAKLLGISRGTLYKKMREYDIHTE >gi|333608975|gb|AFDH01000001.1| GENE 22 23050 - 23964 933 304 aa, chain + ## HITS:1 COG:BH2740 KEGG:ns NR:ns ## COG: BH2740 COG0506 # Protein_GI_number: 15615303 # Func_class: E Amino acid transport and metabolism # Function: Proline dehydrogenase # Organism: Bacillus halodurans # 1 303 4 304 306 367 61.0 1e-101 MEAIMRNMFQALGKSHSANKMAKKFGLRFGAARFVAGESIQQAIEAVRGLNSDGRLATLD HLGEFVFSEEEANESAEMCIKTLEAIAASGVNSNLSLKMTSLGLDISKDLCLQNMRRILD CAKKHGNFVRIDMEDYEHCQITLDILHELRDEYDNVGTVIQAYLYRSEQDIRDLNSIHAN LRLVKGAYKESPKVAFPEKKDVDDNYKKIIKQHLLNGNYAAIASHDEAVINEMKAFIRDM KISGDQFEFQMLYGIREDLQKQLVAEGYRVRAYVPYGIDWFGYFMRRLAERPANVWFVLK NFFK >gi|333608975|gb|AFDH01000001.1| GENE 23 23996 - 25567 1748 523 aa, chain + ## HITS:1 COG:BH2737 KEGG:ns NR:ns ## COG: BH2737 COG1012 # Protein_GI_number: 15615300 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Bacillus halodurans # 8 520 2 512 515 613 59.0 1e-175 MTTNQTTIAPFKNEPFTDFTQEDNKKAMQEALAKVKQELGKEYPLHIGADKVTTEDKIVS INPGNIDQVIGRVSKATQELAERAMQTALSTFETWKKVPARERAEYLLKAAELMRQRKHE FSAWMVLESGKNWAEADADTAEAIDFMEFYAREAIRLSETNTHQPLTKLDGEDNRLTYIP LGVGVVIPPWNFPLAICAGMATAAVVSGNTVLVKPASTTPVIAHKFVALMEEVGLPAGVI NYIPGSGAEVGDYLTTHPKTRFVSFTGSKEVGLRINRLAAETVEGQIWIKRVIAEMGGKD GIVVDETADLDAAAAAITASAFGFQGQKCSAGSRAVVVESVYDEIVEKVAELTKKLEIGL QDENYAAGPVIDENSYNKILEYIEIGKKEGRLVTGGGKAEGNGYYIQPTVFADVDGKARV MQEEIFGPVLAIAKAKDWKEAIAMYNDTEFGLTGAFFSKDESRIETALEDMHCGNLYINR KCTGALVGVHPFGGFNMSGTDSKAGGYDYLLLFTQAKLTSRKL >gi|333608975|gb|AFDH01000001.1| GENE 24 25784 - 28156 1533 790 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_1407 NR:ns ## KEGG: GYMC10_1407 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 782 1 698 702 802 55.0 0 MLTSLKAIEAYRRGAEPPVPAYTWLRFLVSAEERIVNLERIRSIHELADANPVLDYVERT LRILDGLKLSFWVKEILETVLVWSETAKGGTVRQRMQWQADGINLFVHNIGAAQLFDRFN EMGDTGTDKLLVIRSLIATHGLIGQYIRGEVPFEGNEPLTEIVKRGLLTPEELQSLLLPL NHSIIGAVSPELWNTVRSEVEELASHISIGEQPGAWSVRERLRKLRSGSIRQGENFEAEY EKVAERLEAIERARVDEAGERMPPNGQVFVGEAFDGGTGQVKQSEQTGQAGSAEQAGAND YDGPMRQAGQDEEAGQAARTKQADEFRYPGYALERALQPLAGKTLWYVESALQEFSLEEV VKVFMLALQTGANTVSAATMTDEPVHHISFERLMNAMYYDYKGVKKINVYKKRIIEKFLR ELAFEHIGSSGAPVNPHLAYKVERSPSAADTVFFTFEFSAAAEKLIEFCMEAEKSPLYEK AVLLLFDLFELRRDAYDRFHNEEEYLETMNRTADYKSVMLEFITGEKVLDIGPGGGVMLD LIEQRLPDKQPVGIDISTNVIEALNRKKQLEGHRWEVLKGDALNLKDYVHPGTVGTVIFS SILHELYSYIEWNGSRFNRDTVAAALRSAFDVLAVGGRIIIRDGIMTEPAEMKRRIRFLA QDDKEWLMRYTGDFAGRQIQVEYLENGDVVMPVNDAMEFLYTYTWGEEAYVHEVQEQFGY FTPSDYADFIGKVLGPEAVVVEFRHFLQEGYTDALAGKVVFMDEKGASVPLPDSTCLIVI EKRGETHLDN >gi|333608975|gb|AFDH01000001.1| GENE 25 28229 - 28999 579 256 aa, chain + ## HITS:1 COG:lin0490 KEGG:ns NR:ns ## COG: lin0490 COG1051 # Protein_GI_number: 16799565 # Func_class: F Nucleotide transport and metabolism # Function: ADP-ribose pyrophosphatase # Organism: Listeria innocua # 4 255 7 241 242 149 35.0 4e-36 MNPNLEDENYSAGKYRTPDGAPADIVIFTITSTERGTAKKSLPHRELQVLLIQRKGWPFA GQWALPGGFCKETETVYDCAKRELSEETGVQEVHIEYFNVYSTPGRDPRGWIISHAFFAL VHEQYLAGRQAADDAADVKLFSVEEALRMELAFDHKQILQDALDQVRRQMLTTIIAKEFL PEEFTISELYQVIRTLVPEFEEKNFIRKITSTQSRKGIIEEARDSRGERKFSNRYSQRAA QLYRFTGDVPQLSLYS >gi|333608975|gb|AFDH01000001.1| GENE 26 29066 - 29752 689 228 aa, chain + ## HITS:1 COG:PA1958 KEGG:ns NR:ns ## COG: PA1958 COG3201 # Protein_GI_number: 15597154 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinamide mononucleotide transporter # Organism: Pseudomonas aeruginosa # 24 210 2 188 191 115 41.0 9e-26 MKKTGTMLVLLAAMLTVAWLTASSAFEIAATTTGLLCVWLTARENIWSWPISLVNVACFF YMFWEVKLYADMALQVFFFLLSIYGWIVWLTKRGGAGVRPTRKIAPWLILPLVLFLIGAT AGWGYVLHKYTDASIPYADACIATLSIIAQLLLSAKILENWTVWIAVDVLSIGMYAYKGL DAIAFLYLIYLIIAIAGLITWKRNYTAAEGFRLTPEPAGNPHSTERGA >gi|333608975|gb|AFDH01000001.1| GENE 27 29755 - 30777 770 340 aa, chain + ## HITS:1 COG:YPO0444_3 KEGG:ns NR:ns ## COG: YPO0444_3 COG3172 # Protein_GI_number: 16120775 # Func_class: H Coenzyme transport and metabolism # Function: Predicted ATPase/kinase involved in NAD metabolism # Organism: Yersinia pestis # 157 306 5 159 198 66 32.0 6e-11 MNTQSKTTGLTLGKFAPLHKGHQLMIETAIEENDDVIVLIYDSPDVTDVPLPVRAKWIRT LYPGVEVIEAWDGPVENGYTPEIQRMHEEHILAMLGGRKITRFYSSEKYGEHVSAALGAH NRQVDPGRLTVPVSGTRVRHDPYGQRRYVDPVVYRDLITKVVFLGAPSTGKTTLAGYLAN LHGTNWMPEYGREYWAEHQIGRRLSKEQLLEIAEGHLRREEKLTEEANKYVFVDTDARTT LRFSMYYHGGALPKLHELAEAAAARYDLVFVCDTDIPYDDTWDRSGDAQRNLFQKQILAD LNMRRIPYFVLSGTLEERAARVNAVLAKHRKYRSLAEVLA >gi|333608975|gb|AFDH01000001.1| GENE 28 30857 - 31249 291 130 aa, chain - ## HITS:1 COG:BH2160 KEGG:ns NR:ns ## COG: BH2160 COG0346 # Protein_GI_number: 15614723 # Func_class: E Amino acid transport and metabolism # Function: Lactoylglutathione lyase and related lyases # Organism: Bacillus halodurans # 1 127 1 127 127 171 65.0 4e-43 MLHHVEINVSDLNESAPFWEWLLSQLGYETFQRWEKGISWKCGDTYLVFVQTEERFLDLP YHRRRTGLNHLAFHAKSREQVDGLTEALTAKGVRVLYREQHPHAGGPRHYAVYFEDPDRI KVEVVAPDDV >gi|333608975|gb|AFDH01000001.1| GENE 29 31486 - 32373 1000 295 aa, chain + ## HITS:1 COG:lin0385 KEGG:ns NR:ns ## COG: lin0385 COG2822 # Protein_GI_number: 16799462 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted periplasmic lipoprotein involved in iron transport # Organism: Listeria innocua # 22 290 120 386 386 215 47.0 1e-55 MKIRYVALFAACTVLFTGCGSKNNENAGASATPDAKATPAAAAATPAPAGDESWKPILDA YRTYATEQSDLFVKETEKFVKAVKSGNVEEAKKLYAPTRMYYERIEPIAEALGDLDPNID ARENDVEEKDWRGFHRIEQALWQKNTTKGQEEYADRLLNDAKQLRALIETVEVDSGLLVT GAVELLNEVSASKVTGEEERYSHTDLYDFVANVEGAKKIYTLLQPKLKSKDAALEETIGA KFKDLEQALAAYKEGDGYVSYEKLKQDDTKKLSRLLDALAEPLSQMGTILGAAAK >gi|333608975|gb|AFDH01000001.1| GENE 30 32370 - 33668 1043 432 aa, chain + ## HITS:1 COG:BS_ywbN KEGG:ns NR:ns ## COG: BS_ywbN COG2837 # Protein_GI_number: 16080877 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted iron-dependent peroxidase # Organism: Bacillus subtilis # 6 432 3 414 416 357 45.0 2e-98 MSGNDNDQKKGFFDKPLSRRDILKLAGVGGAGLLLGAGGVGGIVAAQASKTEKAFSASGA ETDPQGTVPFYGGHQAGIVTPVQDFICFAAFDVTASSLAEVRKLFQAWTAAAANMAQGKM VGQDDGNELLPPSDTGEAAGLTSSRTTITFGAGPSFFDGRFGLAGKKPEAIQDLPAFGGD ELRPEWCGGDLCVQVCANDMQIAFHAIRNLARIARGKAVLRWTQEGFQRTGYSDPAKATP RNLMGFKDGTGNPDVKDEQEMKKVVWADSADGSGWMHGGSYMVVRRIRMRIEVWDRSTLA DQEATFGRHRNSGAPLGASGEFDSPDMEKKDASGKPVIPATSHFKLARGDGSVKILRRSY SYSTGIDHKTGQLDAGLLFVCYQRDPRKQFVPIQKALGKSDKLNEYIVHIGSAVFACFPG VKEGGYIGDTLF >gi|333608975|gb|AFDH01000001.1| GENE 31 33649 - 35499 1562 616 aa, chain + ## HITS:1 COG:lin0384 KEGG:ns NR:ns ## COG: lin0384 COG0672 # Protein_GI_number: 16799461 # Func_class: P Inorganic ion transport and metabolism # Function: High-affinity Fe2+/Pb2+ permease # Organism: Listeria innocua # 163 594 42 468 494 239 31.0 1e-62 MATPFFKRKKRSLSLAASRSVFKIGLAALLLLISVTAAGTGYSPVLAAGDSKASGADGML PVVGGALVEAGQGSWTKAAEHLAEADKLWQAEAAKSTAAAANVNSALAHAKKTVAEGDKD PKAATAALSELAKAVNKYAKEGRQDAKTGQSGQDTAASLLPVMTKLAASIQSGDLTQAYN DYKTLNNGWLKVEQAIRSDNFTVYSGMETQMSMIRVALQAEPTQPEQAAGETAALIQLVN DYTAGKIVSKAPEPADMSVAELIGILDQASSDIAAGHHTEAAGQMQAFIQKWPSAEGQVR IRSAAVYTQIENQMTEASRYLMSVPPAGDKAKEVIAAMREQLQPMTGEKRYTAVDAGLIL LREGLEAILVISALLAYLKRTGNGDKRRWIWSGVGSGLLLSAAMAFLLSYMISQAASGST REFIEGGTGLLSVVLMLTVGNWLHAKSNVKAWNSYIDRQMGSALAGGSLWSLFAVSLLAI LREGAETTIFYVGMAPSIAPSQLFLGIGVTLLLLIGIGFAIIRLSAKLPIRPFFMTASAL IYYLVFRFLGESIHSLQVASVVPAHSASGLPSVGWLGIYPTWETLLPQLALLAYIAAKLL RSRSGKASSEPALTER >gi|333608975|gb|AFDH01000001.1| GENE 32 35690 - 36685 1012 331 aa, chain - ## HITS:1 COG:BS_yfiY KEGG:ns NR:ns ## COG: BS_yfiY COG0614 # Protein_GI_number: 16077911 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-hydroxamate transport system, periplasmic component # Organism: Bacillus subtilis # 53 327 38 320 325 294 53.0 2e-79 MNRPKRSLSTLALLIFTIFALAVSGCSKPGTAPAASTAPNTASPAPAEAGTARKVKHAMG ETEIKGTPQRVVILTNEGTEALLELGVKPVGAVKSGVGKTWYPHIKDAMQGVTDLGEEVQ PNLELIVTLKPDLIIGNKVRHEKIYTQLQKIAPTVFAETLTGQWKGNFKLYAEALNKKTE GEKALAAYDKHVADVKAKFGSKTSAKVSIVRFLPGAVRIYQNDTFSGVILKDLGFARPAA QDKNAFMEVITKERMVDMDGDILFYFNSDYDDSKGGTKTQQEWMSDPLYKNLNAAKTDKA FQIDEIIWNTSGGIKAANLMLDDLVKYADKL >gi|333608975|gb|AFDH01000001.1| GENE 33 36948 - 38336 1617 462 aa, chain + ## HITS:1 COG:BS_yodV KEGG:ns NR:ns ## COG: BS_yodV COG4247 # Protein_GI_number: 16079038 # Func_class: I Lipid transport and metabolism # Function: 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) # Organism: Bacillus subtilis # 121 462 36 382 382 393 59.0 1e-109 MKLFKSFSVLLIAASFYSQAAWASVEEGYEPLRDMLEQAGARVTWNQSTLTADFALQSGL EGSVTIGNDGYKLNGTDGKLNGHVKLIGDKTYVPPGFVELVLSKLRSGGGEQTAVGEALA RVTADGETEAVDTGEDAADDPAIWVHPDDPAKSKLIATNKGGGILVYDLDGKQVQSYKLG KMNNIDVRYGYELNGKRMDIAAATNRTSNTVDVFSINPETGALTDIAAKPIKSDMGEVYG FSLYHSLKTGKYYALVLGKEGEFEQIELIPGSAGVEGRLVRHFKLASQAEGIVADDEYGT IYIAEEDAAIWKIGAEPDSGLKPYAKVDEAGKGHLTADIEGLALYYGADGKGYLMASSQG SSTYAVYNRQGTNRYLGSFAVKDGLIDGTTETDGIDVVGFGLGPAYPNGIFVAQDDENTD NGKKRNQNFKIVSWDKLAKSFHAPLRIDNGIDPRKLSPRKDG >gi|333608975|gb|AFDH01000001.1| GENE 34 38589 - 39362 224 257 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 11 254 4 242 242 90 30 2e-17 MYLPSFQLEGKTALVTGAGRGIGRALAIGLAEAGADVVLLSRTQSDLDAVAAEIAEATGR KAYAIAADAGTREGVTEAVGRAVREAGRLDILVNNAGMNIRTPALEVTDEEWDAIVQTNL KSAFLMSQTVGRHMKEHGGGRIVNVASVAGHMALRTGVVYGSTKAALIQMTKILALEWAQ YGILVNAIGPWYFPTPLTEKLLADESFVAEVTGRTPLKRVGRLEELVGPVVFLSSDAASY VTGQTLYVDGGMTIYGF >gi|333608975|gb|AFDH01000001.1| GENE 35 39388 - 40443 1037 351 aa, chain + ## HITS:1 COG:BS_ywcH KEGG:ns NR:ns ## COG: BS_ywcH COG2141 # Protein_GI_number: 16080861 # Func_class: C Energy production and conversion # Function: Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases # Organism: Bacillus subtilis # 8 341 4 327 333 228 41.0 1e-59 MKPLPLRLSVLDLVPVMQKADSHTALGQAVTLARTAEKLGYTRYWVSEHHDMKQLASACP EVLLAHIGAHTEHIRIGSGAVLLPHYQPVKVAEAFHLLATLHPGRIDLGIGRAPGGSAHV TLALSGNFLENVQKMPDKIRDLTALIEGEFTVEGERVTARPVPPDSPELWLLGTNAKSAA YAAEYGTGYVFGRFMSDNDGAAVLGEYRSAFRPSRLLAEPRAIVAVGAVCAETEERAREL AAEGAGWLRSGLPAAEEAAGSEAVQVQGRDRQQGALSAAGEAAEGRQPEKADTPDRRTLI GTAGQIKEQLHELQNLYGADEFLLVTQVADYAQRLKSYELLASCIIGPGRQ >gi|333608975|gb|AFDH01000001.1| GENE 36 40616 - 40927 421 103 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_3332 NR:ns ## KEGG: Pjdr2_3332 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 9 93 4 88 92 76 43.0 4e-13 MGEMDGQTIQVLNASMIHDTENGYIGKVEFKLAEGKTAYEVALFSKKGKEWMYSLNFTAE SGTEEEIVAIEQQLEEDDDLFDFLVNTALSRMEQDSSGGVEGE >gi|333608975|gb|AFDH01000001.1| GENE 37 41108 - 41653 717 181 aa, chain + ## HITS:1 COG:BS_yppP KEGG:ns NR:ns ## COG: BS_yppP COG0225 # Protein_GI_number: 16079228 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptide methionine sulfoxide reductase # Organism: Bacillus subtilis # 12 180 6 174 177 231 69.0 6e-61 MTETEKQAAAYELATFAGGCFWCMVTPFEELPGIHGIVSGYTGGREANPTYEQVKAGETG HAEAVQIRFDPDVFPYEKLLELFWQQVDPTDAFGQFQDRGLSYRAAIFTHTEKQRELAEQ SKRELAQSGRFDKPIVTEIVPAGPFYEAEEYHQNYHRKNPQHYKEDRAQSGRDEFIGSHW K >gi|333608975|gb|AFDH01000001.1| GENE 38 41759 - 42469 904 236 aa, chain + ## HITS:1 COG:BS_deoD KEGG:ns NR:ns ## COG: BS_deoD COG0813 # Protein_GI_number: 16079021 # Func_class: F Nucleotide transport and metabolism # Function: Purine-nucleoside phosphorylase # Organism: Bacillus subtilis # 1 235 1 233 233 322 69.0 3e-88 MSVHIGAKENEIAERILLPGDPLRAKFIAENFLEGAVCYNEVRGMYGFTGTYKGQRVSVQ GTGMGVPTISIYVHELLESYGVKTLVRVGTCGAFHEDVKVRDLVLAMTSHTDSAVNRIRF NGLDFAPAADFGLLKSAYESAESAGMPVHVGSVFTSDTFYRDDEGATAALLTKYGTLAVE METAALYTLAAKRKARALSILTVSDHLVTGEETTAEERQTTFRQMIEVALDTVIQY >gi|333608975|gb|AFDH01000001.1| GENE 39 42692 - 43198 563 168 aa, chain - ## HITS:1 COG:BS_yvnA KEGG:ns NR:ns ## COG: BS_yvnA COG1846 # Protein_GI_number: 16080558 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 9 158 8 151 157 70 29.0 1e-12 MNDGKAAYELLQAKLLQYLHSRDKAAELKKQKAYDMIGGLQKDGAERNADLSQLTLTQMH VLHEIASGENANVTQIANHIGVTKGGVSKAVAKLIQAGLAAEAPRPGSKREMHYLVTPLG EQIARVHDKLHRLLEEKHFKLYSTYSGEELSVIVRFLDDLTRLNEKPL >gi|333608975|gb|AFDH01000001.1| GENE 40 43217 - 44425 1028 402 aa, chain - ## HITS:1 COG:BS_yvmA KEGG:ns NR:ns ## COG: BS_yvmA COG0477 # Protein_GI_number: 16080562 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus subtilis # 6 390 5 386 403 329 50.0 7e-90 MPTANRTQHSFLLYLVSISAFLASLTQNIYSPVLPLLKDSFHVSLARVNASVSLFMLILA VMQLVLGPLIDSIGARKILLPGLFLTVIGSAGCSLAVRFDSFLFFRALQALGTAAVPLIA ATTIGHLLSGHDRGRAMGTYQTLLSFAPAVAPVLGGFIGSRAGYAGIFWLLTGIAAVLFI VHVLYFPSSRSEGESLPAEAKPVSTHAAYRTIFGSKIGLTVMLTGFLHFFIYFALLVYLP VLLTDHYGLGLEWVGLLYLPMAVSTLAGSWLFKKIQHRIGLTALLFWGSLLISGFVVLFA LTGMASLAGLSAALVLYGISSGFTLPVHTTLLTGEFPSIRGTALGLYNFIRYAGMAAGPV VFGYLQVYVHPAALFGLLGLAFATAVFVLLKWERTGKPVRFT >gi|333608975|gb|AFDH01000001.1| GENE 41 44661 - 46355 1255 564 aa, chain + ## HITS:1 COG:no KEGG:BBta_p0030 NR:ns ## KEGG: BBta_p0030 # Name: not_defined # Def: hypothetical protein # Organism: Bradyrhizobium_BTAi1 # Pathway: not_defined # 145 523 64 436 459 216 38.0 2e-54 MARFRTVSDRSLSLWQSAVTETVQKQAGVQEPVKTDAEEKETEETEKPIQQCLVEGSCLF TTEQNLILAALGIQVKQEQNTAGNEGTAQGSVEDRHEDKAERKTESSAGVTAGEERADRH MGDRKVSADEASEGVETEAVMTSPNTGDAVLNLPDTASDMGQASRLMFEAALAKAEGSEE EALRLMREARKYSTGDLAGWLSCITTYLEYDARYDAPYYRDWKLDGRDIGTYGVVSHVLP GDAKVGLIGDWATGMPDARELIACILDQDVDAVIHLGDTYYSGTPEECRRNFKEVFDEVF AKTGKPRIPVYSIPGNHDYYAFGYGFYQEILDEINRGEPEWKQEASYFCLRTEDGAWQFL GMDTGRNDYSPYNGINPTYDGPWLEESEVEWHRDKLANFKGSTLLLSHHQLFSQHSAIQG WGAQRPWLNEHLEAAFSPFFDRIACWFWGHEHNLCLFRDGLMGLAKGRLVGCSAYEETSG KDPYAPYRDDYAEHVPYREEMPRVSQTDGYYNHAFAILEFKREAKEDPITCAYYEFPSWG SNAPEKRGAKLLMREFIHSKHFNV >gi|333608975|gb|AFDH01000001.1| GENE 42 46451 - 47419 880 322 aa, chain + ## HITS:1 COG:MTH724 KEGG:ns NR:ns ## COG: MTH724 COG1041 # Protein_GI_number: 15678751 # Func_class: L Replication, recombination and repair # Function: Predicted DNA modification methylase # Organism: Methanothermobacter thermautotrophicus # 103 316 103 335 336 82 30.0 1e-15 MNSSADGRPVPSYVYSFACHEDEKELCMLELRTLLGVRPLDGWAESPLELDPSRSPFIRH RLEVRLQAASLDELAERAKTLDLNGDTFKLLYVEAEGKASYNERRAIERRIGQHVRGKAD MKQPRHLLGAAYAGGRWVLGPCRRSEAVWLAHNSKPRQYSTALSTRVARAAVNIAVPDPA GIRAVDPCCGIGTVLVEALSMGIDIVGRDLNPLAVRGARENLAHFGYPDVVKISDICDLD GAYDALLLDMPYNLCSVISTEEQLEMLRSARRLSPRAVVISAEPIDAALERAGFAVKDRC VVRKGSFERQIIVCERREDGAE >gi|333608975|gb|AFDH01000001.1| GENE 43 47950 - 48777 525 275 aa, chain + ## HITS:1 COG:CAC3499 KEGG:ns NR:ns ## COG: CAC3499 COG1082 # Protein_GI_number: 15896736 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar phosphate isomerases/epimerases # Organism: Clostridium acetobutylicum # 1 260 1 256 271 161 34.0 1e-39 MNLAGMNITYKHFPFQHFLDSMSELGIGHIELWAGEPHLYVYRNVLGNLRQIRQQLKSRD MQVVCYTPEQCVYPFNIAASDAHLRQKSVDYFIDNLYAALELGTDRMLMTSGIGDFSVSR EESWKYATDSIYRVSRVAEKEGVTLALEPLTRFETNLLIDVEGILRVMRDVSSPSLKGMI DTVAMQLAGETPEDYFTKLPEICHFHLIDGDGSSDAHLALDDGELNWREYVTTLESHGYK GGCTLEIMGSGYYQSPHEALKKSIRKIRDLEVLSS >gi|333608975|gb|AFDH01000001.1| GENE 44 48794 - 50137 924 447 aa, chain + ## HITS:1 COG:yhfM KEGG:ns NR:ns ## COG: yhfM COG0531 # Protein_GI_number: 16131248 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Escherichia coli K12 # 1 434 18 454 462 439 58.0 1e-123 MSNDTLTRKLGFWSALAIAVGTTVGSGIFVSSGDVAKAAGLPSISILAWVIGGIIAIPQV MVLAELSTAYPQNGSGYVYLNKAGWRPLAFLYGWATFWALDPPSISIMALAIVAYLASFF PFFAGFTGKLLGVAIILIITSIHYRSVKGGGSFQVIITAVKIIPFLIVIVLGLMYMNFDN FAYTPAAGAGSSSLIGGVSATTWAYTGMAAICFMAGEFKNPGKVLPKALISSVLIILGLY TLLAVCVTGLMPFDKLMGSSAAVSDAVKYIPGLSGIASSFVAVTAIIVILGSLSSCIMFQ PRLEYAMAKDGLFFQRFGKVHPKFETPSFSIIAQVTFACILVFFSNLTELLGYFTLIQLV INILDFAAVYKCRKRDDYNPIYRMPMWRVTTILAIAGAAWLAWGTFTWAPIQGMIAAAIV IATGLPVYYYWEKKYGSKKPGDSQIVA >gi|333608975|gb|AFDH01000001.1| GENE 45 50242 - 51255 895 337 aa, chain + ## HITS:1 COG:SMc03139 KEGG:ns NR:ns ## COG: SMc03139 COG2222 # Protein_GI_number: 15966707 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted phosphosugar isomerases # Organism: Sinorhizobium meliloti # 1 337 1 337 337 284 41.0 2e-76 MLNFDEQLFLKLVEQEGLAFRGQVEEIVDGICKKGYSNIFLIGAGGTIAMMYPYEYILKS NSTIDVHAEIAAEFMVMNNRHFSKDSVCIFTSVSGTTQETVAAAEFCKERGATTIALVAE PDTPLTKIVDHCITTGSEKHSFDTFFMLLHMVVFRFMYNNNEFPQYDQFVKEVSLLPRAI LNAVKSFDPKAETFAKEHKDTDYHMMVGSGNLWGNTYSYAMCILEEMQWIHAKSIHAAEF FHGTLELVVEDTSVILLKGEDETRPLMDRVERFAGKITKKLTIIDTKEFKMEGISEEFRK HFSVNINWSVLSRISVHLERERNHPLTLRRYYRQMEY >gi|333608975|gb|AFDH01000001.1| GENE 46 51316 - 52098 654 260 aa, chain + ## HITS:1 COG:yhfQ KEGG:ns NR:ns ## COG: yhfQ COG0524 # Protein_GI_number: 16131252 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Escherichia coli K12 # 3 260 4 261 261 246 48.0 4e-65 MRIVTVGDNCMDVYQASGKAYPGGNPVNVAVYLTELGAQTAYIGWVGTDMYGEIMIQAIK DKGVDTSRISKKEGKTAVTQVEMIGNDRKFGDYDEGVMGQFSLTPEEISFAGNYQLVHSG IWGHADKYFAAFKEKGLVTSFDFSDQLSDELVQTLTPHVDYPFFSYTQDDDYIRGFLTEV KQRGSQITVATLGENGSLAYDGERFYTCGVGKVDVVDTMGAGDSFIAGFIYGRLKGLSIE ACLEQGASTAAKTIGYFGAW >gi|333608975|gb|AFDH01000001.1| GENE 47 52164 - 52892 589 242 aa, chain + ## HITS:1 COG:BS_yurK KEGG:ns NR:ns ## COG: BS_yurK COG2188 # Protein_GI_number: 16080309 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 3 239 2 238 242 209 44.0 3e-54 MNLNPSTPQPLYMQIRQMLKNDIQHGRYKPDEQIPTEAELCDTYNVSRITIRKAIEELVR DGTLTRIPRRGTFVASNKFHNELLSVSGFSEFSHQLGMIPNSRILRSEVIQASEEVAGHL QIEEGSPVLELERLMYVDDRPLFYDIAHYSLTRFPDLEKKIAMNESTYKILSEDYHTEIV SNDKIIDVIGATKDYAKLLECDIGANLFRILKIAFDANDEPVHRSTFMCETNRVNLTVHR AK >gi|333608975|gb|AFDH01000001.1| GENE 48 52957 - 53691 838 244 aa, chain - ## HITS:1 COG:BS_ywcG KEGG:ns NR:ns ## COG: BS_ywcG COG0778 # Protein_GI_number: 16080862 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Bacillus subtilis # 1 241 1 246 249 231 48.0 7e-61 MNSFIDLLTRHRSIRKFKPDPIPGDQLQAIVASAQMASTSSSVQAYTIIAATDPALKKEL ARLAGNQAYVEQCGLFLVFCADLNRLRKATEQSGEVFHQNTESFLVASMDAALAAQNAAI AAESLGLGICYIGGIRNNPDGVAEALKLPELVYPVFGMCVGVPDQEPSLRPRLPQTAVLH ENGYQSERSDEGVRQYDETTRKYYEERTGGKQSVTWSRSMADKYRQPVRAHLKPFLEKQG FKLE >gi|333608975|gb|AFDH01000001.1| GENE 49 53811 - 54089 69 92 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MDLAAARMVSVSTLWVTLQADSTATSGSTKALRFIKARFSSEFFPGIGGTTSRSVRSIRS SIFGPLRLLTSGSATLGTPALTAALRPVLPGS >gi|333608975|gb|AFDH01000001.1| GENE 50 54004 - 54459 296 151 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_1649 NR:ns ## KEGG: Pjdr2_1649 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 4 138 16 149 153 89 43.0 4e-17 MLPLVAVLSACSVTHSVETETIRAAAKSMKKNLKGYKGLHCTFTRPDVTCRIDWKGEPDP ETHAAVMAAVKAFVTPGHMREIARSVNWKLEISEFHLLLNTDDNKADAEHAYSARYYKTS DASDDSEANIDAYRTWTEDGTQAVPLENGSD >gi|333608975|gb|AFDH01000001.1| GENE 51 54662 - 55207 374 181 aa, chain + ## HITS:1 COG:lin0443 KEGG:ns NR:ns ## COG: lin0443 COG1595 # Protein_GI_number: 16799520 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog # Organism: Listeria innocua # 20 175 24 181 182 83 28.0 3e-16 MGAQQGNKEGKPAKEHFRTLMLDYGQDVWNYAFFLTGRREMADDISQDVFLSVFRHLNTF EGKASVKTWLFAITRNTARNHMRTAFMRRVILVGRARPNSSHPSAESEAMEAAFTDEIWE IVMKLPAKFREVLVLDAKYDMTMGEIALVLGVSEGTVKSRLSRARKKVSEAWKEESAYER A >gi|333608975|gb|AFDH01000001.1| GENE 52 55194 - 56606 1049 470 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNGPKPEWYDKLKAGPFTRKTFTMDDIYRIEQKTAESAQGGRVPKLTVPKRRRTLPVLAA VFLCVAAAAFLFRGELEPAVTKAWSGFVKPTEPPQATVPPLQQETGTFYLKGDATAVSEP EAFGDEETDATVNSENPITVLEKRNGFVKIGEKRWIPEWYLNKDADKRLKEVRLSQFLRE RPVVTMTAPYYGVIVQGVNFSLYPGEPKPSGGVLKYGRVVQVIRDYRDWVCVNVFSYDGR KYAGDKWVPKENVGVYDSSVAQEGLLKKRVEALSPSGTPAYLVPGARVVIEGETDGIYMI RSQSTYTAKINKSDFLPNPFLGLDRKEDTDPQWYFTQEEMVDRYGDFTKTRTDDQLKGLE PIDIFRYYILASEKGDWETVYALLIKGSDYATPSREEYMTDTGRQPDADKQAKQKWDALR KDYTLYQEISGDSAYIVMTKRGSSSPEDKQAFSLTRNKAGIWKVSWLPMQ >gi|333608975|gb|AFDH01000001.1| GENE 53 56711 - 57352 181 213 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149914418|ref|ZP_01902949.1| 50S ribosomal protein L33 [Roseobacter sp. AzwK-3b] # 104 211 74 192 202 74 38 2e-12 MKKMPILLSAAACAIGLVSAAPSASAMSLATGTQSEHVLDLQERLDALGYFDAGVTGYYG MKTAESVKKFQRAYGLPVDGEADSKTLGKLEKAAVPKQNALEQMARIIYSEARGESYQGQ VAIGAVVINRVQSNQFPDSIPGVIHQPGQFSAVRDGQYGLKPNETAYKAARAALNGSDPT GGALFYYNPDVATSSWSKSRPKTAVIGNHVFTN >gi|333608975|gb|AFDH01000001.1| GENE 54 57824 - 60160 1863 778 aa, chain + ## HITS:1 COG:BH2834 KEGG:ns NR:ns ## COG: BH2834 COG0210 # Protein_GI_number: 15615397 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases # Organism: Bacillus halodurans # 45 668 141 763 780 363 35.0 1e-100 MSQAPFYTVPPGTGHTNIPQAVMASAHTSRELVPDGDRDAFYFRRLEAQGIALNEPQIRA VRHFEGPLLTLAGAGSGKTSVLVCRTGYLLAVRQIRAASILLVTFSSKAAAEMRERIAAL PGITAQEASRLQARTFHSFFLRVIRSQGVQEEIFNETRRQHILLKQIMRELGIPDTYQPE TLLTLLSSYKMNRTELQDLPQQTKEEKEIRSILIRYEEWKLANAKIDFDDVLLRAYRMLK ENESLLRSLQNRFQYVMVDEFQDTNGIQYELIRMIASPQNHLMVVGDDDQTIYSFNGARS EFILHFEKEFPSAKVITLAINYRSGASIVGLGNEIIRHNKMRRVKTLKAANASSARPQYI RPLTTDEEAEIVLSRIRQDVEQGRRSYGDFAVLYRSASNNRALLEQLVLREIPYIDYGDG QLLYEHWLIKPVLDHMRLSLNRRDFEAMEGVLPSLYINREHGMAYIRQQEARQPKKGPLV HLLSMPNKKDFQIEKIQTRLELIRELKKLKPLDAIRKMRVHFYDAYVETDGRKQPTQHKE MLKEMLDELETSAERFRTTAEFVLFVDDVLSRSRQSGRHLSEEQGSRVALMTIHRSKGLE FPVVVLIGACEGSLPHSSVLDPKAADNAADLEEERRLAYVAVTRAREELIVSSPSLYRGR KAGVSRFVVSAFTGRSGDSPASGRRAQPVSGKRTVTAVSRTAPASGRAPERSAPAGPVRT ETVPAWLCTGPGCNAWVRIAAGEPAAGKASGAPAKACPLCGAPMTAGRREAAVRAAGR >gi|333608975|gb|AFDH01000001.1| GENE 55 60550 - 61056 584 168 aa, chain - ## HITS:1 COG:BS_yjlB KEGG:ns NR:ns ## COG: BS_yjlB COG4297 # Protein_GI_number: 16078292 # Func_class: S Function unknown # Function: Uncharacterized protein containing double-stranded beta helix domain # Organism: Bacillus subtilis # 7 167 4 163 165 153 43.0 1e-37 MSAADVDVKTIFFKEDGAIPNHPRLPVLLYSGVFSENAEQTEKLFNQHNWLNSWTNGVFD YHHYHSNAHEVLGVISGSAVVRLGGEHGEQVELRTGDVVVLPAGTGHKKLSGSPDFKIVG AYPGGMEPDLHKESESVTPAIREKIGSVPVPDTDPVFGEEGPLLRLWT >gi|333608975|gb|AFDH01000001.1| GENE 56 61275 - 61994 995 239 aa, chain - ## HITS:1 COG:BS_yoxD KEGG:ns NR:ns ## COG: BS_yoxD COG1028 # Protein_GI_number: 16078911 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Bacillus subtilis # 3 238 4 238 238 246 58.0 2e-65 MELKNKTAIITGAGKGIGKAAAAALAKEGVNLGLLARSTADLEALQKELSGTYGVNVFYA SADISKPSEVQQAISSLTGELGHVDILINNAGIAQFGTVADMDPEQWERIIQVNLMGTYY VTRAVLPGMIQQNSGTIINVASTAGERGFATGSAYCASKFGVLGLTESLMQEVRKSNIRV TALTPSTVNTDLASNAGLKIGDEDRMMQPEDVAELITATLKLPPRVFIKTAGIWTTNPQ >gi|333608975|gb|AFDH01000001.1| GENE 57 62214 - 63059 677 281 aa, chain + ## HITS:1 COG:CAC2347 KEGG:ns NR:ns ## COG: CAC2347 COG1216 # Protein_GI_number: 15895614 # Func_class: R General function prediction only # Function: Predicted glycosyltransferases # Organism: Clostridium acetobutylicum # 5 217 3 215 243 191 46.0 2e-48 MGALTSIIILTRNGLKHTRACVESVQKYTSLPYEFIFVDNGSTDGTLAYLSTVRNATVLA NSVNKGFAGGCNQGIRAAKGDYLLLLNNDVVVTENWLEGLRGWLDWDRTIGIVGPVSCNV APIQRIQPDPYQTMDEMQQFARKWREQNIGMGFYPHRLIGFCMLFHKKLIETIGGLDERF YPGGYEDDDFCLRARLSGKILWAACDVYVHHHGHATFTANGLAWNEQGLYNAEIFRNKWN LEVSAVELEKTGYNPSLIVEKVKTFCPEKHFVPLGEEDGLA >gi|333608975|gb|AFDH01000001.1| GENE 58 63138 - 63948 634 270 aa, chain + ## HITS:1 COG:no KEGG:PPE_03798 NR:ns ## KEGG: PPE_03798 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 1 270 1 301 374 125 44.0 2e-27 MTVLFNNLIQNGGFELGSMDAWGAYNAVAVSTNPKVGANACLLTGGNVGAGIVQAVFALP GESYAVSASFAKTGTGTSPQVNVTLAYYDSSYLFISNGVATTIQQGTLPDVATGSWKMLY EVTGAVPANAAYASFLVTLSPLQNSSNVLLDEVVVMNASASGVTGATGATGPAGPTGPIG PAGSTGATGAVGATGPTGAAGSTGGTGATGATGADGATGATGATGATGATGATGADGADG ATGATGATGATGATGADGATGATGAGGATG Prediction of potential genes in microbial genomes Time: Sun Jul 17 07:26:59 2011 Seq name: gi|333608973|gb|AFDH01000002.1| Paenibacillus sp. HGF7 contig00036, whole genome shotgun sequence Length of sequence - 509 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 35 - 508 389 ## COG5492 Bacterial surface proteins containing Ig-like domains Predicted protein(s) >gi|333608973|gb|AFDH01000002.1| GENE 1 35 - 508 389 157 aa, chain - ## HITS:1 COG:Z1894 KEGG:ns NR:ns ## COG: Z1894 COG5492 # Protein_GI_number: 15801361 # Func_class: N Cell motility # Function: Bacterial surface proteins containing Ig-like domains # Organism: Escherichia coli O157:H7 EDL933 # 1 157 100 256 256 250 98.0 7e-67 EQGQQALLAWFNEGDTRAYKIRFPNGTVDVFRGWVSSIGKAVTAKEVITRTVKVTNVGRP SMAEDRSTVTAATGMTVTPASTSVVKGQSTTLTVAFQPEGVTDKSFRAVSADKTKATVSV SGMTITVNGVAAGKVNIPVVSGNGEFAAVAEITVTAS Prediction of potential genes in microbial genomes Time: Sun Jul 17 07:27:06 2011 Seq name: gi|333608951|gb|AFDH01000003.1| Paenibacillus sp. HGF7 contig00116, whole genome shotgun sequence Length of sequence - 20211 bp Number of predicted genes - 21, with homology - 18 Number of transcription units - 14, operones - 4 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 151 - 210 18.6 1 1 Op 1 44/0.000 - CDS 232 - 1188 959 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 2 1 Op 2 44/0.000 - CDS 1181 - 2227 864 ## COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component 3 1 Op 3 49/0.000 - CDS 2242 - 3177 837 ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 4 1 Op 4 21/0.000 - CDS 3181 - 4113 711 ## COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components - Term 4129 - 4180 5.6 5 1 Op 5 . - CDS 4217 - 5893 1622 ## COG4166 ABC-type oligopeptide transport system, periplasmic component - Prom 6036 - 6095 7.9 6 2 Op 1 . - CDS 6313 - 6705 283 ## GYMC10_1799 hypothetical protein 7 2 Op 2 . - CDS 6714 - 7676 612 ## COG1893 Ketopantoate reductase - Prom 7764 - 7823 3.7 - Term 7785 - 7827 8.5 8 3 Tu 1 . - CDS 7840 - 8487 631 ## PPSC2_c3567 transcription factor, RsfA family - Prom 8681 - 8740 4.2 + Prom 8766 - 8825 8.6 9 4 Tu 1 . + CDS 8865 - 9095 349 ## Pjdr2_3908 hypothetical protein + Term 9121 - 9162 9.1 - Term 9108 - 9150 5.1 10 5 Tu 1 . - CDS 9174 - 9290 68 ## 11 6 Tu 1 . - CDS 9541 - 10800 1208 ## COG1565 Uncharacterized conserved protein + Prom 10648 - 10707 3.8 12 7 Tu 1 . + CDS 10799 - 11794 617 ## + Term 11802 - 11843 7.2 + Prom 11810 - 11869 4.6 13 8 Tu 1 . + CDS 11889 - 12986 1096 ## Pjdr2_3910 hypothetical protein + Term 12999 - 13025 -0.7 14 9 Tu 1 . + CDS 13125 - 13649 393 ## + Term 13688 - 13733 4.3 - Term 13680 - 13716 6.1 15 10 Op 1 . - CDS 13729 - 15060 1521 ## COG1875 Predicted ATPase related to phosphate starvation-inducible protein PhoH - Prom 15227 - 15286 2.1 16 10 Op 2 . - CDS 15289 - 15741 370 ## Bcell_2650 pyridoxamine 5'-phosphate oxidase-related FMN-binding protein - Prom 15800 - 15859 4.3 17 11 Op 1 . - CDS 15956 - 16231 276 ## Pjdr2_3916 hypothetical protein 18 11 Op 2 . - CDS 16282 - 16578 369 ## GYMC10_1789 hypothetical protein - Term 16599 - 16657 9.3 19 12 Tu 1 . - CDS 16686 - 18527 1937 ## COG1217 Predicted membrane GTPase involved in stress response - Term 18749 - 18788 4.1 20 13 Tu 1 . - CDS 18881 - 19366 693 ## GYMC10_1787 hypothetical protein - Prom 19528 - 19587 5.5 21 14 Tu 1 . - CDS 19595 - 20209 464 ## gi|319941818|ref|ZP_08016140.1| hypothetical protein HMPREF9464_01359 Predicted protein(s) >gi|333608951|gb|AFDH01000003.1| GENE 1 232 - 1188 959 318 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 2 318 7 327 329 374 57 1e-103 MSDQTILSIRNMKKHFDLGQGKILKAVDNFSIDIKRGETFGLVGESGCGKSTAGRTIIRL YEATDGEVIFNGENVHKLSGRKMREFHRNMQMVFQDPYASLNPRMTVGNIIAEGLDIHGV ASGSKRRERVVELLDAVGLNAEHAGRFPHEFSGGQRQRIGIARALAIEPQFIIADEPISA LDVSVQAQVVNLFKKLQKDRGLTYLFIAHDLAMVKHISDRIGVMYLGNLVEVTTSKELYA NPLHPYTESLLSAIPIPDPEIERKRERIILKGEVPSPLNPPSGCPFRTRCPKAMDQCAVT MPPMKEVEPGHFVSCHLY >gi|333608951|gb|AFDH01000003.1| GENE 2 1181 - 2227 864 348 aa, chain - ## HITS:1 COG:lin2297 KEGG:ns NR:ns ## COG: lin2297 COG0444 # Protein_GI_number: 16801361 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component # Organism: Listeria innocua # 6 346 2 337 358 446 65.0 1e-125 MSKPKENILEVKDLKVSFNTYAGEVQAVRGVTFDLRKGEVLAIVGESGCGKSVTSQTLMR LIPSPPGVIKGGSILFEGKKGKVDITKLSNRQMESVRGSEMGMIFQDPMTSLNPTMTVGR QISESLIKHQGMTKEQARQRSMELLRLVGLSNVEGRIKQYPHEFSGGMRQRVMIAIALAC NPKLLIADEPTTALDVTVQAQIIDLMRELSIKTGSSIILITHDLGVVAEMAERVVVMYAG KIVEKGTVDEIFYDPRHPYTWGLLKSVPRLDTRADEELIPIPGTPPDLFAPPKGCAFAAR CPYAMKVCVEEDPEHTQLSAEHSAACWLLHPDAPKVERPVEVGGKQHV >gi|333608951|gb|AFDH01000003.1| GENE 3 2242 - 3177 837 311 aa, chain - ## HITS:1 COG:BS_oppC KEGG:ns NR:ns ## COG: BS_oppC COG1173 # Protein_GI_number: 16078210 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Bacillus subtilis # 15 311 9 305 305 322 54.0 5e-88 MQNPGQSTVNASGKFAPLIKDEHLQEQIVRPSLTYWKDAWRRLKKNRLAMAGLFILILLT LVSIVAPFLSQFEYSATNPSIANTKPNSVHWFGTDDLGRDLWTRVWWGTRISLFIGIVAA VIDLIVGVIYGGISGYYGGKVDSVMQRFIEIIYSIPFLLIAILLMMVLKPGITSIIIAYS ITGWVPMARLVRGQVLQLKEQEYVLASRTLGANTGRIIMRHLIPNALGIIVVQITFVVPS AIFAEAFLGFIGIGIRPPLASLGSLLSDGAASMRYYPFRLLFPTAVFSLILLSFNVLGDG LRDALDPKMRK >gi|333608951|gb|AFDH01000003.1| GENE 4 3181 - 4113 711 310 aa, chain - ## HITS:1 COG:SA0845 KEGG:ns NR:ns ## COG: SA0845 COG0601 # Protein_GI_number: 15926575 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Staphylococcus aureus N315 # 1 310 1 308 308 277 47.0 2e-74 MFRYILQRLFYAIITLWLVITVTFVLMKLLPGDPFGEAVLKMSKENYQILLAQYGLDKPQ WQQYLLYLKHVIQGDLGVSFQFPARDVTSMISAGFWPSFQLGMYSIIVALIFGLFLGIIA ALNHNKWQDRTAIFIAVVGVSIPSFVLGPLLAYYIGNKLGWLPAALWKGPSYKVLPTLAL SFGTLANVARMMRTSMLDVLNQDYIKTAKAKGLASHTVVWRHTIRNAIMPVVTIIGPVFA GLITGTLVVEQVFSVPGLGKQLVNAIYSNDYTVISGMTIFYSAILIIVILITDILYGYID PRIRLGKGGK >gi|333608951|gb|AFDH01000003.1| GENE 5 4217 - 5893 1622 558 aa, chain - ## HITS:1 COG:lin2300 KEGG:ns NR:ns ## COG: lin2300 COG4166 # Protein_GI_number: 16801364 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 20 555 22 559 559 337 40.0 4e-92 MKAKKWVSTAVALTLVGSIAAGCGSDDKAATGDKGGTDKANAAKQELRINFNAEPPVLDS SKGTTNAAFTMLNALNEGLYRLDKDGKPQPGLAAAKPEISKDGLVYTIKLRDAKWADGQP VKASDFVYSFQRTLDPSTKAQYNFMTAWIKGGNDIIKAKPEEVEAKKKALGVKAIDEKTL EITLEKPVTFFEDLLAFPIFFPQREDLVTKNGEKYGGDADKIIGAGPFVLKQWNHDQNLV FEKNPNYWDAANVKLEKLTVNIVTDSNSSLNLYETEETDVTNLSSDQFKAKSQTDKENIK VKNELTSMYFMYNQKNKVLANANIRKALTLAVDRDAYVLTLANNGTAAARGLVADGTQDG NKNEFRKTAGDTLPKADPAKAKEYLAAGLKELGIDKLPELKLLGDEQGSGKKSIEFLMGE WEKNLGYKAVGEPVPHKLRVERQNKGDYDIVLALWGADYNDPMTFLDMWVTGSEFNNVYY SNPTYDEKIKAADKEADPAKRSQLLVDAEKILMEDMAVGPVYSRKVPYLVRNTVQGLVLP NYGMEWDVKGVTITEAKK >gi|333608951|gb|AFDH01000003.1| GENE 6 6313 - 6705 283 130 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_1799 NR:ns ## KEGG: GYMC10_1799 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 8 119 4 115 128 74 41.0 1e-12 MDSFIDGLSSIYAVLAMLPFLSFVLIWIIVYIVTKEKKKSTRITMDLTTFLLLGSVASLW NSLFSSSFGLWFLLLVILIVFGLIGGYQNDRKGKMELGKSLRIVWRLSFMGLSLLYVMFM VVRMGTAVLG >gi|333608951|gb|AFDH01000003.1| GENE 7 6714 - 7676 612 320 aa, chain - ## HITS:1 COG:BS_ylbQ KEGG:ns NR:ns ## COG: BS_ylbQ COG1893 # Protein_GI_number: 16078575 # Func_class: H Coenzyme transport and metabolism # Function: Ketopantoate reductase # Organism: Bacillus subtilis # 10 319 10 293 298 124 33.0 4e-28 MLVEVVGGGSLGLLFAAKLAAAGCRVKLVTRSREQAEAVNKKGIRVEGWTELTAEVPALA FPDAVSGLNSADRSEARFILLAVKQTAFTEELASYLISSMEQGAGLVSLQNGIGHWEKLD SEKARPFMIQAVTTEGARRLSHSEVAHTGRGWTRIGHIHAKDTEPHTEKVPQINLKTVQD CLKQAGFDVFVSKSIERHIWSKLLINAVINPLTALLRIPNGKLPETSDSLLLMRKLFEEG RDLALTQHVTVEESLWDEILEVCRKTAVNRSSMLQDIAAGRMTEIEAITGGLLAKAERAG MSMPTHETVYRLIKAAEQSG >gi|333608951|gb|AFDH01000003.1| GENE 8 7840 - 8487 631 215 aa, chain - ## HITS:1 COG:no KEGG:PPSC2_c3567 NR:ns ## KEGG: PPSC2_c3567 # Name: not_defined # Def: transcription factor, RsfA family # Organism: P.polymyxa_SC2 # Pathway: not_defined # 1 215 1 216 216 247 67.0 2e-64 MTAIRQDAWSDEDDLMLAEVTLRHIREGSTQLAAFEEVGERIGRTAAACGFRWNSFVRKK YEAAISIAKSQRQKRAQLKKHAAVSTISGGASLAVLDVLEPSGREVTEAALSIDAVIRFL RQWKQTYQELMRHIKQMERSLNDKEEELSKYRRENEQLNKQVNEVETDYRVVNDDYKALI QIMDRARKMAFLVEEEEESKPRFKMDANGNLERID >gi|333608951|gb|AFDH01000003.1| GENE 9 8865 - 9095 349 76 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_3908 NR:ns ## KEGG: Pjdr2_3908 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 1 74 1 74 78 73 71.0 2e-12 MDRMFRVLGFWTLVIALMSLAGEMYPMSMLFFFQTVVFVLLGYLKLSERTYIVLFWGYMV ISFTGFTYWSVFKMPL >gi|333608951|gb|AFDH01000003.1| GENE 10 9174 - 9290 68 38 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MPTLHVMVLGARFYVMVRNVHIPAYFKEQIHRFSGERT >gi|333608951|gb|AFDH01000003.1| GENE 11 9541 - 10800 1208 419 aa, chain - ## HITS:1 COG:alr3357 KEGG:ns NR:ns ## COG: alr3357 COG1565 # Protein_GI_number: 17230849 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Nostoc sp. PCC 7120 # 71 405 23 373 404 149 31.0 1e-35 MLGIPFLFYLFYYIYSGSICLYPYNFPGGEKMSEFNGHRGIPSGTGETEAEAGHPEIVAI LKRKIEEEGPLPFRDYMTICLYHPEFGYYRREEPKIGRDGDFYTSSNLGSMMGEIIAGEL LAFAESLPSGSPVEFVEFGGGTGRLALQALDALRSRSPGQYASVSITAIESSAYHCALQR EMLREHADRLRFLTEAEWLAEPSGGGVFAVANELADAMPVHRVRCRDGRLELGAVGWDDR TGFTERWLPLGEDHPAALHLGREGIRLAHGQQAEVNLGAGEWITRAAGRIRSGRMLLVDY GDTAGELYASHRMNGTLMCYRRHIADDNPYAAAGRKDITAHVDFTACMRAARAAGWTVAR YETQREFLVRGGILGRLVEHAGRDPFSPEAKANRAIRQLLISDGMSELFKVLTLEREES >gi|333608951|gb|AFDH01000003.1| GENE 12 10799 - 11794 617 331 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFKALISLSIAIVIPAVLISGCSDREAAKAAVKGALHKQAEMNAFAFAGGADLHLDGLPA GDSSTLPGQLFSFLKDSKLEWKGAASLNPVRWESDLKAASRSGSAELTVPLLFQDNKLFF HMPLLNPDNEYFVTRLGVPPDSPASAGDKTGTAAKAAASPALEHLSRLSSDLSKLLQEGA DEAWFEHDGEVKLTDGSAAQSYTASVTRMNAGAWNKKVQEKLPRFLEALKSNGLISEAQA AEFRRSASSFKLSAPGKWTVLVDKEGFLRKLEMEFKFTGPGGNKSSASAQTFSFHQSFDA VNQTPEFRKPLPRQTKSIDEVLKSLGSAGKQ >gi|333608951|gb|AFDH01000003.1| GENE 13 11889 - 12986 1096 365 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_3910 NR:ns ## KEGG: Pjdr2_3910 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 22 363 27 364 366 196 32.0 1e-48 MILKKFTLTFCTLLFGTSLLFVPVHAENRTEAEKKETESLLQKGLTVHEIDREIVRLAEE DVKLGGQLTDTEKKIAAQEIVVKDAKKRAGKVIRSYYAGERESLWSVLLSVRSLPDLLKT YEYLDIILDHDHRSLTAHQDAYRELGAMKTKLANQRTDLQKTKENYVKQKERILALQSEL NRELDASGRSELILALIQELNGRWAQEGLPLFRTYFRSLAGVMDYFPELLTPGGKDSHLT LETGGGKFQMTDHQLNAFLRSKDSKFDDLTFQFKPDGVMAFGTKDDMDVSIKGTYEMEKD GDQPVIAFRVQELVFNGFKLPDTTGKSLEKEFNLRIYPKKLFSFVSVEQITLEDGLLAIK LGLNW >gi|333608951|gb|AFDH01000003.1| GENE 14 13125 - 13649 393 174 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MQLKPALIVDFRQDGSAADFAPFDPELKETVELFDQDKEVFVFNREEELDQAKELVSRHG YEAEPMNLVLLPPHAERTGYFSDYGFESGAGHLYLYEPGIAVFRLGTGAVQDPDSPMKTA SEAEPELARRQMDEYVIARFHEADGLHFVVDRQHDELMDRTARAYGCTVHFIIS >gi|333608951|gb|AFDH01000003.1| GENE 15 13729 - 15060 1521 443 aa, chain - ## HITS:1 COG:BH2629 KEGG:ns NR:ns ## COG: BH2629 COG1875 # Protein_GI_number: 15615192 # Func_class: T Signal transduction mechanisms # Function: Predicted ATPase related to phosphate starvation-inducible protein PhoH # Organism: Bacillus halodurans # 1 443 1 442 442 573 65.0 1e-163 MKKIFVLDTNVLLQDPNAMFSFEDNEVIIPAVVLEEIDSKKRNADEIGRNARMVSRLLDA MRARGRLHDGITLDSGGSLKVELNHKSFNKMQEVFAEVTNDNRIIAVALNYRTEEQTKSE PRPVILVSKDMLVRIKADVLGLTAQDYLSDRVVSDHEMYAGCTTLHVHPSVIDEFYSFRF LSVPTLNLGYRLNPHEFVILRDELGTSKSALLKTSSDGKKLEPLFLSNEPVWGIAARNAQ QRMALELLLNDDISFVTLSGKAGTGKTLLTLAAGLLKVEDERKYKKLTIARPVVPMGKDI GYLPGEKDEKLRPWMQPIYDNLEFLFDTKKAGDIEKILAGLGSIQVEALTYIRGRSIPGQ FIIIDEAQNLSKHEVKTIVSRVGEGSKIVLLGDPGQIDHPYLDAASNGLTYAVERFKQEE ISGHVTLEKGERSHLAQLAADLL >gi|333608951|gb|AFDH01000003.1| GENE 16 15289 - 15741 370 150 aa, chain - ## HITS:1 COG:no KEGG:Bcell_2650 NR:ns ## KEGG: Bcell_2650 # Name: not_defined # Def: pyridoxamine 5'-phosphate oxidase-related FMN-binding protein # Organism: B.cellulosilyticus # Pathway: not_defined # 1 150 1 151 151 152 54.0 5e-36 MAEEITALSEQLIAEFHKEKLVLLHTIDSETGAPTANAISWVYAPDPGRIRFAVDKRSRL IANLEKSPSATVTMIAAGTVHAIYAEAAPAAEVLEGVPFKLACYDLNIRVVRDAMFYGAR ISVDPEFEKTYDKRAADKLDGQVFEAMKKA >gi|333608951|gb|AFDH01000003.1| GENE 17 15956 - 16231 276 91 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_3916 NR:ns ## KEGG: Pjdr2_3916 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 1 90 1 90 90 81 51.0 1e-14 MTLQDALFNWLQIRIVADARPLDEAAGKTADFFEEILREDHGVSEFERTEADEYRLRIDY VRQGEKHSVFFDREQAGRLLADIGSNPKYNE >gi|333608951|gb|AFDH01000003.1| GENE 18 16282 - 16578 369 98 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_1789 NR:ns ## KEGG: GYMC10_1789 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 95 1 94 97 77 46.0 2e-13 MYQWFAENFWLTCLIIFIMMSFVYNKVFRTRRLPVLKALIVYVLLALGSFMLTFFQVLGP QIPIVPSLAVAILLMLILRIRYFVEGRRKKKDSGQTGQ >gi|333608951|gb|AFDH01000003.1| GENE 19 16686 - 18527 1937 613 aa, chain - ## HITS:1 COG:BH2632 KEGG:ns NR:ns ## COG: BH2632 COG1217 # Protein_GI_number: 15615195 # Func_class: T Signal transduction mechanisms # Function: Predicted membrane GTPase involved in stress response # Organism: Bacillus halodurans # 1 612 1 612 614 861 71.0 0 MFPREKIRNIAIIAHVDHGKTTLVDKLLQQSGTFRENEAVQERAMDSGDLERERGITILA KNTAINYKDHLINIMDTPGHADFGGEVERIMKMVDGVLLVVDAFEGTMPQTKFVLRKALE QNLTPVVVVNKIDRPNARPLEVIDEVLDLFIELGANDDQLEFPVVYASALQGTSSLESDS QGENMLALYETIVSHIPHPTESVDEPLQFLVTLMDFNEYLGRIGIGRVNRGIIKQGQPVA VMTREGGMKQARIEKLFGFQGLKRVEIEQAGAGDIIAISGIKDINIGETIADPANPEALP VLKIDEPTLQMTFIVNNSPFAGREGKWVTSRKLRERLFNELETDVSLRVEETDSPDMFIV SGRGELHLGILIENMRREGFELQVSKPEVIIRQIDGQKMEPIERLLIDVPEDSMGAVMES LGTRKAEMVNMVNHGNGNVRLEFLIPARGLIGYRTNFLTLTRGYGIMNHAFDSYGPYAGA GVGGRHEGVLVSMENGVATTYGLMSIEDRGTLFVTPATEVYEGMIVGEHTRDNDIVVNIC KEKQLNNIRSAGKDDTVKLKVPRIYSLEQALEYLNDDEYCEITPKSIRLRKKILNKNERE RAEKQRKTADANA >gi|333608951|gb|AFDH01000003.1| GENE 20 18881 - 19366 693 161 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_1787 NR:ns ## KEGG: GYMC10_1787 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 2 159 3 159 170 110 47.0 2e-23 MSNKPLSMGIILVGVALVLLLGKIGVFTFIGALLWPLVLLVLPGLVLHALVFNRTLPSAA VFPGGVLVTYGILFFLCSLFGWGLMSILWPGFIFGIAVGLYELVYFEKGRDNGLRMIAIG LALVSVVLLLFNLVFTVSIYVFIVLLLAAGVVLIVSGKRIW >gi|333608951|gb|AFDH01000003.1| GENE 21 19595 - 20209 464 204 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|319941818|ref|ZP_08016140.1| ## NR: gi|319941818|ref|ZP_08016140.1| hypothetical protein HMPREF9464_01359 [Sutterella wadsworthensis 3_1_45B] hypothetical protein HMPREF9464_01359 [Sutterella wadsworthensis 3_1_45B] # 100 202 47 150 150 66 32.0 1e-09 AGDAGGAPASSASPGTAPRQSPAPGAAAAGGSVQPSAAPSGGTAAGTAPAASAPPQKNAS AGNGPADKTPAAAKPTAAPAKSSSPVLKWTEFFDDEKQATPSNKFWDLNGKSVEIRGFMG EVLSFDKHWFLLIPAPGAECPFDNGDETYWNKIMIVFVPKETKLRYTSGPLKIKGRLDVG IKVDESGYKTMFRLYDASFESIKE Prediction of potential genes in microbial genomes Time: Sun Jul 17 07:28:27 2011 Seq name: gi|333608924|gb|AFDH01000004.1| Paenibacillus sp. HGF7 contig00172, whole genome shotgun sequence Length of sequence - 31989 bp Number of predicted genes - 23, with homology - 22 Number of transcription units - 14, operones - 5 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 4/0.000 + CDS 2 - 190 122 ## COG2407 L-fucose isomerase and related proteins 2 1 Op 2 3/0.000 + CDS 217 - 1743 1424 ## COG1070 Sugar (pentulose and hexulose) kinases 3 1 Op 3 . + CDS 1736 - 2398 786 ## COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases + Term 2526 - 2557 3.2 + Prom 2587 - 2646 2.8 4 2 Tu 1 . + CDS 2758 - 5754 2951 ## COG5498 Predicted glycosyl hydrolase + Prom 5825 - 5884 4.2 5 3 Tu 1 . + CDS 5917 - 6447 579 ## GYMC10_4365 hypothetical protein + Term 6625 - 6685 5.5 - Term 6621 - 6667 9.3 6 4 Op 1 . - CDS 6687 - 6887 104 ## 7 4 Op 2 . - CDS 6889 - 7896 798 ## COG4271 Predicted nucleotide-binding protein containing TIR -like domain - Prom 7927 - 7986 2.4 8 5 Tu 1 . - CDS 8022 - 8573 184 ## Pjdr2_2726 GCN5-related N-acetyltransferase - Prom 8729 - 8788 2.9 - Term 8649 - 8709 12.4 9 6 Op 1 . - CDS 8858 - 9781 977 ## COG0673 Predicted dehydrogenases and related proteins - Prom 9804 - 9863 5.0 - Term 9834 - 9866 -1.0 10 6 Op 2 . - CDS 9949 - 10848 971 ## COG1054 Predicted sulfurtransferase - Prom 10963 - 11022 5.0 - Term 11095 - 11142 13.6 11 7 Tu 1 . - CDS 11164 - 12792 1695 ## COG0753 Catalase - Prom 12970 - 13029 4.6 + Prom 12929 - 12988 5.1 12 8 Tu 1 . + CDS 13102 - 14823 1657 ## COG1069 Ribulose kinase + Prom 15070 - 15129 4.0 13 9 Op 1 . + CDS 15243 - 17888 2460 ## COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 14 9 Op 2 . + CDS 17913 - 19241 1446 ## COG1653 ABC-type sugar transport system, periplasmic component + Term 19246 - 19292 7.0 - Term 19228 - 19286 12.3 15 10 Tu 1 . - CDS 19324 - 23307 4077 ## COG3325 Chitinase - Term 23773 - 23808 3.6 16 11 Tu 1 . - CDS 23828 - 25561 1831 ## COG0840 Methyl-accepting chemotaxis protein - Prom 25612 - 25671 4.5 + Prom 25622 - 25681 5.0 17 12 Op 1 39/0.000 + CDS 25831 - 26754 924 ## COG0226 ABC-type phosphate transport system, periplasmic component + Prom 26761 - 26820 9.5 18 12 Op 2 38/0.000 + CDS 27004 - 27870 904 ## COG0573 ABC-type phosphate transport system, permease component 19 12 Op 3 41/0.000 + CDS 27867 - 28724 955 ## COG0581 ABC-type phosphate transport system, permease component 20 12 Op 4 32/0.000 + CDS 28727 - 29509 183 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 21 12 Op 5 . + CDS 29526 - 30185 782 ## COG0704 Phosphate uptake regulator + Term 30351 - 30400 14.8 - Term 30509 - 30546 3.1 22 13 Tu 1 . - CDS 30607 - 31356 643 ## COG1011 Predicted hydrolase (HAD superfamily) + Prom 31481 - 31540 5.6 23 14 Tu 1 . + CDS 31565 - 31988 420 ## COG0258 5'-3' exonuclease (including N-terminal domain of PolI) Predicted protein(s) >gi|333608924|gb|AFDH01000004.1| GENE 1 2 - 190 122 62 aa, chain + ## HITS:1 COG:HI0614 KEGG:ns NR:ns ## COG: HI0614 COG2407 # Protein_GI_number: 16272556 # Func_class: G Carbohydrate transport and metabolism # Function: L-fucose isomerase and related proteins # Organism: Haemophilus influenzae # 3 62 546 604 604 100 70.0 7e-22 SISYGHIGADLITLAAMLRIPVSMHNVDEKNLFRPRVWSSFGTRDEEAADFRACANFGPL YK >gi|333608924|gb|AFDH01000004.1| GENE 2 217 - 1743 1424 508 aa, chain + ## HITS:1 COG:TM1073 KEGG:ns NR:ns ## COG: TM1073 COG1070 # Protein_GI_number: 15643831 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar (pentulose and hexulose) kinases # Organism: Thermotoga maritima # 7 492 2 470 476 329 37.0 8e-90 MGVEKNGLHMLAVDFGASSGRTVLGTYNGSRLAVEEIHRFSNDPVRLGGNLHWDFLRLFH EMLQGIRAYKSFTAEAPASLAVDTWGVDYGLVDGRGRLLGNPYHYRDSRNEPAMRRVLNR IPEEELYRRTGIQTQSINTLFQLEAEGEAASLAGGDVRMLFMPDLFRYYLCGDISAEYTI ASTSGLLHPQLRGWDEEVLALLPHPRAMFPSIVMPGTAAGSLRAALAEELQMSSFPVVAA ASHDTASAVVSIPAQAGGSYAFISCGTWSLMGVETERPVITEQSRILAFTNEGGADGRIR LQKNIMGLWLLQECRRYWELEGEALTFGDMQAMAAAEEAAASYVDPEDPVFLAPGNMPQR IRSWCGQTGQPVPQTKAQMIRCIVESLAMKFSQTLHEIEELLGRRLDAVHMVGGGIRNRL LCQLTANITGRCVIAGPVEATAVGSLLMQAKARGELHTRDEMRQVVLASFPPDVYSPEDT GRWREAYARYRKINANAHHSERSVNGND >gi|333608924|gb|AFDH01000004.1| GENE 3 1736 - 2398 786 220 aa, chain + ## HITS:1 COG:PAB0117 KEGG:ns NR:ns ## COG: PAB0117 COG0235 # Protein_GI_number: 14520392 # Func_class: G Carbohydrate transport and metabolism # Function: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases # Organism: Pyrococcus abyssi # 4 182 9 185 194 118 33.0 1e-26 MTERKIREELTKYAAKSVAKGLVVGPGGNISARSEEFMYLSPSGFALEDIEPHQWVPVHI PTGEIGDTAFRPSSEVLMHLFCYRVNPLLQAIVHTHPAYCIALTLVDDELPMLFPDQAAL VGDVAFIPYVVPTTDKLAHLVAEKADRYSSMLLKNHGLVTTGKNLREAYYRTEVMEESAK IYMIAKSVGEPRRLTEEEYKEIQGLESEAYRVQLLQNMKE >gi|333608924|gb|AFDH01000004.1| GENE 4 2758 - 5754 2951 998 aa, chain + ## HITS:1 COG:BH0236 KEGG:ns NR:ns ## COG: BH0236 COG5498 # Protein_GI_number: 15612799 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted glycosyl hydrolase # Organism: Bacillus halodurans # 8 997 9 1019 1020 750 43.0 0 MKKLFAGLLALVLLVSLLPERGTSAFSGEVTLGSGSYSTVLPPGAVDTQSMIYKTANVTG AMPTNDWWSNLAWDTFSEAQYPHPLAMKNGSGGIRIYYPGNRITANSSCVCGWINDIHDF TVGHSSVAAFPDAKVDGYSDWFVKSQYKSGASEMNVSYGHGSPYVYFTYAGGNPKLSFYD APAVWSGSANTPVLGITVAGAHYGLFGANGSTWSGIGSGTLTNNGSSYFSVAVLPDQSQS TLSKFAQYAYSHVTGTQVSYSYNATASEVTSTFTFTTQAKQGAQSGTIFALYPHQWKNSP TPLLSYTYGSVRGLMKTGEGSSFQTRMKFNGVLPALPDKGSYDRGQLQQYIDQAEAETYT GDGDTYWIGKRLGKLASLAPIADQIGDTTAANKFRTEIKSILQNWFKASDGSGNLKSGNV FYYNRNWGTVIGYPASYGSNNELNDHHFHYGYFIKAAAEVARVDKAWASAWGPMVNLLIR DIAGSSRTDTMFPYLRNFDPYAGHSWASGHARFGDGNNNESSSEGMNAWAGMILWGQATG DTAIRDTGISLYTTEMNAINEYWFDVTGANRPAGFTRSTASMVWGGKTVGDGTWWTGNPE EVHGINWLPFTGASLYLTQYPDYAAKNYNALVSENGGTNFDAWEDLVYMYRAISNPAEAK SFWSSRGNALSAEAGNSKAFAYHWIYNLDAMGVQDRTVTADTPLYAVFVKNGVRTYTAYN AGSSAIRVTFSDGKTMSVPANGSNTEGAGGSTPTPTPTPTATPTPTPTPTPTPTPTPSAA PIPGKIEAESYASMSGVQTETTTDTGGGLNVGYLDTGDWMDYSVNVAKAGTYTLQARVAS PNGTGQFQLRSGSNTPATVNVPNTGGWQTWTTVSAQVQLAAGPQTLRVAISGPQFNLNWL QFASADNVLTYTASDYTATVTKSGASETVVFAPKTSATYVDIHYKVNGTNQQNVRMTASG GSWTHTIQGLSAGQQVELWFTYEKSGPQYDSAHYTYTH >gi|333608924|gb|AFDH01000004.1| GENE 5 5917 - 6447 579 176 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_4365 NR:ns ## KEGG: GYMC10_4365 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 95 174 8 87 88 72 45.0 8e-12 MIFSELEPFLNKKRRELLAALDAFGPEERHLSEYEGGWNPVQIVEHLSIVEEQVIAEIGK LLNGEAVRPSEPEDRKLVDITALFEQKGLLGTPKKSPPSASPTGKVAYEDGLERLAEVRG KLKAVLPLLAARETNRLVSRHPLGVELNACQWLQFSAFHEWSHIHQLKRIRLAHSD >gi|333608924|gb|AFDH01000004.1| GENE 6 6687 - 6887 104 66 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKPVRNRSNSGLKRRRSAKSAGKVLTQRNSSGPIYSIGPSVDGKEQSFQLVLEKEAVYET PVYLQG >gi|333608924|gb|AFDH01000004.1| GENE 7 6889 - 7896 798 335 aa, chain - ## HITS:1 COG:CC2702_2 KEGG:ns NR:ns ## COG: CC2702_2 COG4271 # Protein_GI_number: 16126935 # Func_class: K Transcription # Function: Predicted nucleotide-binding protein containing TIR -like domain # Organism: Caulobacter vibrioides # 8 164 1 147 151 97 36.0 4e-20 MDQQRKPKVFIGSSREAIPIAEGVLENLSPAAQVNPWFAGAFNPGRYTMEDLDKQVQNND FALFILSTDDVVQIRGKQYASARDNTIFEMGLFMSRLGRERVFFLMPDHIPESVNETAVG GLRTPSDLFGVNALTFEIRSEADEWVQATAAACSTVKRKMRELGCLSEQPTISQLARILR LFRTLLKGVPFKPEEENALQTLSEGIRISYTCPAQFTVKGVTIHSAEQDEWIKQVAGTSN IGTMNRTYPLTANENLGPGDKRILVVDAHLNNRVTMNLHSSSIENEYLICYPLAKKYVLT VHMIGQDTLSSEQLNKIAGLNGQLISSVNDLLGGE >gi|333608924|gb|AFDH01000004.1| GENE 8 8022 - 8573 184 183 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_2726 NR:ns ## KEGG: Pjdr2_2726 # Name: not_defined # Def: GCN5-related N-acetyltransferase # Organism: Paenibacillus # Pathway: not_defined # 1 182 1 184 185 152 44.0 8e-36 MKIITTTQWDEKLWREAEPLYNEAFPDHGRKPIRIIRQMFQRKLCFLHLGIVENTAAVMA ITGELPSIRALLIDYIAVRHDCRGQGTGRLFIEALKDWTRRERGLSGMLIEAEAGDGPGH RSRRRFWEACGFHLTDYVHEYSWVPESYQAMYVNLSPEGKLVDDGRLLFESITDFHQRSY RRT >gi|333608924|gb|AFDH01000004.1| GENE 9 8858 - 9781 977 307 aa, chain - ## HITS:1 COG:lin1972 KEGG:ns NR:ns ## COG: lin1972 COG0673 # Protein_GI_number: 16801038 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Listeria innocua # 1 299 2 300 301 239 41.0 6e-63 MRIGIIGLGDIARKAYLPVITARNDVELVFCTRNTATLEQLAATYRISETVTEVGDLISR GIRAAFVHSSTESHAEITKQLLQNGVHVYVDKPIAYTYEESLELTELAEKNGLILMVGFN RRFAPLYVSVKEKSSPNLILMQKNRPHSPDFARRFILDDFIHVVDTLRYLVPGDVRDVNV TSHQKDGKLYHVMLQLSGDGYTAIGIMNRDSGSSEETVETIGGGRKWSVKDLNTAVELAD GGERHYKFNDWDPVLHRRGFHAIIDHFIQTVKEGGQPLQSTRDALETHRVCEEIVKELEK NGVSAWG >gi|333608924|gb|AFDH01000004.1| GENE 10 9949 - 10848 971 299 aa, chain - ## HITS:1 COG:BS_ybfQ KEGG:ns NR:ns ## COG: BS_ybfQ COG1054 # Protein_GI_number: 16077302 # Func_class: R General function prediction only # Function: Predicted sulfurtransferase # Organism: Bacillus subtilis # 5 291 2 287 322 377 60.0 1e-104 MNDTKQPYRILLYYKFVPIANPEEFAAEHREYCKNLGLKGRILIAAEGINGTVSGTVEQT EQYMSDMHANPLFADMVFKTDPAEEHAFRKMFVRFKQELVTFRYDEELDPNVISGKRLSP AEFHEQLQNEDVIVLDGRSNYEYDLGHFRNAIRPDVEAFREFPEWIRENMADLKDKPILT YCTGGIRCEKLTGFLIKEGFKDVAQLEGGIVTYGQDPEVKGRLFDGKCYVFDERISVPIN HTEEDIVVGKCHHCGKPADTFINCANDFCHLQHICCPECEEEHSGCCSDKCEELVLSAR >gi|333608924|gb|AFDH01000004.1| GENE 11 11164 - 12792 1695 542 aa, chain - ## HITS:1 COG:BS_katX KEGG:ns NR:ns ## COG: BS_katX COG0753 # Protein_GI_number: 16080914 # Func_class: P Inorganic ion transport and metabolism # Function: Catalase # Organism: Bacillus subtilis # 1 542 1 547 547 776 70.0 0 MKDEINNGTAVTGVGGPADQRLAEGEQETTLTNRQGHPITDNQNIRTVGNRGPSTLENYH FLEKISHFDREKIPERVVHARGAGAHGYFEAYGKVGEEPVAKYTRAKLFQEAGKKTPVFV RFSTVVHGVHSPETLRDPRGFAVKFYTEDGNWDLVGNNLKIFFIRDPLKFPDMVHAFRPD PVSGVQNMERMFDFLSNSPEATHMVTFLFSPWGIPANYREMQGSGVNTYKWVNADGEGVL IKYHWEPIHNGIRNLVQREADEIQGKNYSHATQDLYEAIERGDYPEWELSVQILSDDEHP ELDFDPLDPTKLWDHEKFPFLPVGKMVLNKNPENYFAEVEQAAFGTGVLVDGLDFSDDKL LQGRTFSYSDTQRHRVGTNYLQLPVNAPKKHVATNQRDGQMTYFVDRAPGQNPHVNYEPS SLGGLQEAPPRGREHEPAYNAKLVREKIDRPNDFGQAGDTYRKFEPWEKDELISNLVNNL KICKPVIRDKMVNYFTQADAEYGRRVAEELGKAVASSEHMGTVQNREGAEQAEQAGRKTD GY >gi|333608924|gb|AFDH01000004.1| GENE 12 13102 - 14823 1657 573 aa, chain + ## HITS:1 COG:BH1872 KEGG:ns NR:ns ## COG: BH1872 COG1069 # Protein_GI_number: 15614435 # Func_class: C Energy production and conversion # Function: Ribulose kinase # Organism: Bacillus halodurans # 1 552 1 552 563 780 67.0 0 MSKTYAIGIDYGTESGRAVLVDLADGREIAEHVTVYPHGVMCRKLPHSGVRLEPDWALQH PGDYMAVLTASVPGVIQASGVSPERVVGIGVDFTACTILPVDESGVPLCFHPELKERPHA WVKLWKHHAAQDEADRINEIAALRGEAFLPRYGGKLSSEWMLAKVWQILGEAPDIYERAD RFLEAADWVIYQMTGKMTRSSCMAGYKANWHKRDGYPGPGFLKALDPRLENLAETKLRGE VFPLGTKAGELTAEMAEKMGLAPGTAVAVGIIDAHAGVPALGAVTPGKLVMAMGTSICHL LLGAEERPVEGMCGVVEDGIIPGCFGYEAGQSAGGDIFAWYVNEALPGYVKEAAAAENTD VHGWLENRASAYKPGETGLLALDWWNGNRSVLVDANLSGLIVGLTLATKPEEIYRALLEA TAFGTRKIVDTFQNSGLEVNELFACGGLPQKNRLLMQIYADVTNREIKVAASRQTPALGA AMFGAVAAGADRGGYATIVEAAARMARVSEDTYKPDAANAAVYDKLYREYTKLHDYFGRD AGGTMKELKAVKEQTLREKGTERHRGQKQDLLP >gi|333608924|gb|AFDH01000004.1| GENE 13 15243 - 17888 2460 881 aa, chain + ## HITS:1 COG:RSc1545 KEGG:ns NR:ns ## COG: RSc1545 COG5001 # Protein_GI_number: 17546264 # Func_class: T Signal transduction mechanisms # Function: Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain # Organism: Ralstonia solanacearum # 436 861 334 754 776 284 35.0 6e-76 MLGYLLCIALALLFEASRLHLIYGIAFSFSSIFLLFAVSLFGVRLGVLAGVITQLFSFFF LHHPTFEWIGLLEIAGVGLLNRKKPGQLLVWDSIYWLLMGLPLMIVIYYGFYKFVSDELI LMLLIALSNGLFNALIADILLKYLPLFHWFGLVKERERTYSYSKVLFHLSIMAVALPSLL YIVMNSWYSEKLSIQNSRQLAVNTANSINQELNQWGAEDILGIRLKGRIQVGYLQELVNK YTSEQLFRIVITDRSNKVLAADRQSYTLNQVYDWRGGNNIVGLDDNFYQVLPARESTALP AQQWREGSYIYDNAVARMPLHVYIDIPIRHYQISVFSQYLSQLWYLLLFAAAAAATALYL SRVLVHGLSKLATSTTDLPEKLKQMKEIEWPSSRVSEITSLTYNFRQMSLNLLSMFHQAQ NMNQRLQEQTDKLRLSEEKLHQLAFYDILTGLPNRLYFTTYLQSMLAEAAHMPKQVAVMF ADLNRFKQINDTLGHDIGDLLLKEIGERFTRSVTESCKLFRIGGDEFVIVIEDADDAKAT AVAHSMFAAMEEPVRLMESTLYSSVSIGISMFPRDGDTMEAIVKNADMAMYFAKSMGSSN SYQFYEEELKIRFSEEMMIDNGIQEALANNQLVLHYQPKVDTASGAISGIEALVRWEHPE LGRISPDKFIPLAERSGIIYKIDEWVLKEACRQNKAWQDEGLPKVPVAVNISALHFSQTN LLDMIHSALEESGLEESYLTLEITEGVFIENVEQVIGIISRIRERGIHISIDDFGTGYSS LNQLQRLPISHVKLDRSFIRDIGGEPKKAAVAKAIIELAHSMNMTVVAEGVETAEESDYF TQCRCDELQGYYFSRPLPALEFSRLLQRGNYAGLFAGGHTD >gi|333608924|gb|AFDH01000004.1| GENE 14 17913 - 19241 1446 442 aa, chain + ## HITS:1 COG:BH1924 KEGG:ns NR:ns ## COG: BH1924 COG1653 # Protein_GI_number: 15614487 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Bacillus halodurans # 59 333 50 326 426 71 21.0 3e-12 MVKLTKIFVLLLLLTVTTAGCFRSEPLIPASTAPAEKPAPSTGQAAVPNHLSIWTHYGGI ETMAAKFKESYPDLSVDVKVIPYSEYVGAYLQALADGKPPDVMMVDSSDFGNFSAIEGLE DLLKPPYQAGKYRNDFSPSLWDSGMSADGIELIALPLSTAPTVTYYREDIMKQYGFPSEP EELAKYMEDPANWLNMAKKLREHNIYLTQWVNETVQLFERSEGIFDRKLNFMRYNEAFHK AVDIAKKVNDFGLEAHLDVWGDLGRKAVQDGTIAMMYFGTWGVEQIKEWAPETAGKWRET RLPFGLYGWQNSTNFLLPSNGANKEMGWKFIEFAVTEYSKEGLSGAVPAYLPARGNAKEL AATNPFLGGQKTYALHEDLMTRVREFPATPLDVKAQEIWENEIASGIEKRLSTKQIIADA RDKIEQSLSKEKQILLDTMKKK >gi|333608924|gb|AFDH01000004.1| GENE 15 19324 - 23307 4077 1327 aa, chain - ## HITS:1 COG:BH0916_1 KEGG:ns NR:ns ## COG: BH0916_1 COG3325 # Protein_GI_number: 15613479 # Func_class: G Carbohydrate transport and metabolism # Function: Chitinase # Organism: Bacillus halodurans # 25 458 14 445 450 602 65.0 1e-171 MNLKSRQSAKTRRSHSPARVALRILLIVTLIVSLFPFLGLSAQKASAAESYKIVGYYPSW AAYGRNYNVADIDASKVTHINYAFADICWNGKHGNPDPTGPNPQTWACQDAAGANINVPN GTVVLGDPWIDTQKSFPGDTWDEPVRGNLKQLIKLKQANPNLKTIISVGGWSWSNRFSDV AASAATREVFANSAVDFIRKYQFDGVDLDWEYPVGGGLAGNSARPEDKQNYTLLLQKIRE KLDAAGTADNKKYFLTIASGAGPTYAANTELGNIAKHLDWINIMTYDFNGGWQTVSAHNA PLYTDPAAIAAGVPNADTFNVEKGVQGHLDAGVPASKIVLGLAFYGRGWSGCKNTANGEY QQCAGLATTGTWEKGSFDFYDLEANYINKNGYTRYWNNTAKVPFLYNASNGTFISYDDAE SIGYKTSFIKSKGLGGGMLWEFSGDRNKTLLKKVTTDLSGSAPVGDTIAPSVPANLTSTA KTSTSVTLSWSASTDNVGVTGYTVTYGTKTVDVSATTATITGLTPSTAYSFTVKAKDAAG NVSAASSAVSVTTDANSGGGTDTTAPTAPANLAVTAKTSTSVTLGWTASTDNVGVTGYTV SYGSTSVNVTGTTATISGLTAGTAYTFNVKAKDAAGNLSAAATVSATTDSGSGGAVCPAA WDTSKSYTAAQRVSYNGKIYEAKWWTQGERPDLSGQYGVWKYVSDCGAGAGSPASVSSGG AALASNLIAGAGAALPAIAPGSSAASTSSALAPSTKVLVGYWHNFDNGSGFIRLRDISPK FDVINVSFAEPVGGSTTGTIGFTPFNYTDADFKADVAYLQSQGKKVIISIGGANGQVQLT TAGARSNFVSSMKSIISKYGFDGLDIDFEGHSLYLNPGDADFKNPTTPVITNLISAIREL HDSFGDKFMLTMAPETFFVQLGYSFYGGTCSGCDTRAGAYLPVIYGVRDILDWLQVQLYN SGPITGLDDQYHTMGVADFHVAMTDMLLTGFPIAKNPNSFFPALRPDQVVVGLPANGNAG GGFTSVSEVHKALDYLMKGKAFGSYTLRGSVQPGLRGLMTWSINWDKFNNFEFSNSHRAY LDSFGPGTPVDTQAPSVPGNLRSSNVTATGVTLTWNASTDNTGVTGYEVYQGSVKIADTA STTYNVSNLTANTSYTFIVKAKDAAGNVSAASTPLAVTTANGGGSGDTSAPTAPTALKVT AKSSSSVSLSWTASTDNVGVTGYTVSYGTNAVDVTGTTAVITGLTANTAYTFTVKAKDAA GNVSAAASIQATTDPAAPGGPAAWAAGVSYKVNEEVTYNGSTYICRQPHTSLQGWEPSNV PALWTKK >gi|333608924|gb|AFDH01000004.1| GENE 16 23828 - 25561 1831 577 aa, chain - ## HITS:1 COG:CAC3510 KEGG:ns NR:ns ## COG: CAC3510 COG0840 # Protein_GI_number: 15896747 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Methyl-accepting chemotaxis protein # Organism: Clostridium acetobutylicum # 187 573 295 680 680 160 27.0 4e-39 MNMGNFFYLSTMKRKLIASFGVLILLFVAMAFFLVHQISKINAQIALQNERVAMKTTALE LKETVQELSIIASGLELSKDPSYIERYEQKRKVYSSLLDAIKETARTEEEKAWRGGLIVA SADYINNFDAAAKLVQEKKVSPKEMELSMLHYYGEGQILRETIFKLVDKFYIAFSADAQA AVEDSRKVIAQTVTVTVAAAVFVLLASAVVAVLLIRSFLIPVRKLQEAVARMASGDLRHE IGSRTQDELGELSRSFDRMTAQVRGMLEHTSGIATALAGQSVTFRRVSTDTAAANADIVQ AMSAIARGASDQAADSEHASTSVAGLESETREIAEYAAVMSQASREAAEVTVQGSRSVHS LEEASGATRRVLGQVQEAMATLAGDSRRIGTILDAITEIASRTHLLALNAAIEAAAAGSS GRGFAVIAAEVRQLAQQSSDEARRAAGTIASVESRMLEMQARVTDARRHADAQELTVRES LGSFEAIERAMEVVTNQIQFVNGRIERSLHSSAQLVGTIRHMAEIAEQTSAGVQEVTSAS TENDASIRSIAVQADEMNGLAESLYREINKFKIGEAS >gi|333608924|gb|AFDH01000004.1| GENE 17 25831 - 26754 924 307 aa, chain + ## HITS:1 COG:lin2642 KEGG:ns NR:ns ## COG: lin2642 COG0226 # Protein_GI_number: 16801704 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, periplasmic component # Organism: Listeria innocua # 5 290 1 282 302 182 40.0 6e-46 MLKFMSKKGLSISLAAVLTLGVLAGCGKTDTNASGPATSNKPTETTAAQEISGTVTASGS SALLPLVKEAAKLFMEKNPKVTINPTAGGSGKGLKDVADGISNIGNSDVAAGDEYKDKNL KEHVVAIAPFALIVNPDVGIEGLTKQQAADIFMGKIKNWKEVGGKDAPINVVHRPDSSGS RKLVQQIVLDGKDFTKDGVVQESTGAVKTAVGSQSGSVGYIDTPYLDNTVKALKFDNVAF SKETIKDGSYKLFGTERMYTKGEPTGATKAFLDYIMSPDFQTKKVEELKFLPADLLKNKM IYFRGMS >gi|333608924|gb|AFDH01000004.1| GENE 18 27004 - 27870 904 288 aa, chain + ## HITS:1 COG:BS_yqgH KEGG:ns NR:ns ## COG: BS_yqgH COG0573 # Protein_GI_number: 16079553 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, permease component # Organism: Bacillus subtilis # 4 287 19 309 309 246 51.0 3e-65 MKLQKRQDSVMKLLFVGSAALVSIVIFSIILFVGVQGMRTFSGVSPIEFFFSTDWTPSAD KYGAFPFLFSTFLLTMLAIVLAVPLAVAGAVFMAKIAPKWVREIMRPATDLFVGIPSVVY GLIGLTVIVPFIGKVVNGTGYGILPAGIILAIMILPTILSISEDAIRALPPRLEEASLAL GATRWQTIWRVLLPAARPGILTGVVLGIGRAIGETMAVFMVIGNSPQMPKSLIDSTTVLT TAIVKDMGNTNYGSTWNNALYLMAFVLLITSLLLILIIRVVSRRSEVK >gi|333608924|gb|AFDH01000004.1| GENE 19 27867 - 28724 955 285 aa, chain + ## HITS:1 COG:lin2640 KEGG:ns NR:ns ## COG: lin2640 COG0581 # Protein_GI_number: 16801702 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, permease component # Organism: Listeria innocua # 1 282 1 292 294 253 46.0 2e-67 MNSKTTDRIATLFFWATGIFILLILAWFLIRILGAGLPHLTWDFITGKPEDIVAGGGVGP QLFNSFYILFLSLLFSLPIGLGAGIYLAVYAKKSRFTEIVRMSVETLSSVPSIVFGLFGF LLFVDLMNFKISILSGSLALALLNLPVLVRVTEESIRTVPESYWEASLALGSTKWQAIRK VLIPSALPSLITGITLVAGRALGESAILIYTSGLSVSRHFPDFNPLTMGETLSTHLWYIQ AEAIVPDAKKIAEGSAALLLVVVLIFNLLIGIPSRIIQKRLTGGK >gi|333608924|gb|AFDH01000004.1| GENE 20 28727 - 29509 183 260 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 6 252 1 256 563 75 28 5e-13 MTAPAMTIATDTKIKVNGLDLFYGDNQALHSIDLDIAPNTVSALIGPSGCGKSTFLRTLN RMNDLIDSVRINGTIKVDGQDIYSPESDIVSLRKRVGMVFQRPNPFPMSIYDNIAYGPRI HGQKKRAVLDEIVERSLRQAALWDEVKDRLNKSALGLSGGQQQRLCIARLLAVEPEVLLM DEPTSALDPISTLKVEELTQTLKERYTIIIVTHNMQQAARISDRTSFFLNGILVETDQTD KIFTNPNDQRTEDYITGRFG >gi|333608924|gb|AFDH01000004.1| GENE 21 29526 - 30185 782 219 aa, chain + ## HITS:1 COG:CAC1709 KEGG:ns NR:ns ## COG: CAC1709 COG0704 # Protein_GI_number: 15894986 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate uptake regulator # Organism: Clostridium acetobutylicum # 7 218 6 218 219 147 42.0 2e-35 MNNRLNFQHSIDDLQNELLDLGSMVENSIHQAVEALTRLDTDLARRTVEDDDAVDELTLR IEEMCLKLIALQQPMAGDLRIIGTALSIATDLERIADHAVDIAKITIRLSGETLAKELID IPQMAEISKEMLRESLVAYMNRNVHMAASLAEKDDQVDKIFSRIMTDVIGMMNADFTRNR QLTHLIMVAHYLERVADHVTNIGESVIYMVTGKRKDLNV >gi|333608924|gb|AFDH01000004.1| GENE 22 30607 - 31356 643 249 aa, chain - ## HITS:1 COG:lin0639 KEGG:ns NR:ns ## COG: lin0639 COG1011 # Protein_GI_number: 16799714 # Func_class: R General function prediction only # Function: Predicted hydrolase (HAD superfamily) # Organism: Listeria innocua # 13 218 4 201 234 76 23.0 6e-14 MSPFFFPAPKKLVFFDMNNTLVDRRQCFDSAFTEVLGDYTGRWEQEDGAASPEDALQIYK QEWQKLRKLRPRGHRPSEEMRIACLEKALDAFPISVNETFAKGFFEQIEETEGNYVRLFP GVEETLASLGERYKLAVISNGSRKRLERDIGRLRLSSFFPEELLFSSTKDGPRKPHPGLY RTALKETGIAPGQGVMVGNSWKNDIIGSTRCGLDAVWIYPPHVKKISQRKVGRQKVVIVR SVKQLVHVL >gi|333608924|gb|AFDH01000004.1| GENE 23 31565 - 31988 420 141 aa, chain + ## HITS:1 COG:SA1513_1 KEGG:ns NR:ns ## COG: SA1513_1 COG0258 # Protein_GI_number: 15927268 # Func_class: L Replication, recombination and repair # Function: 5'-3' exonuclease (including N-terminal domain of PolI) # Organism: Staphylococcus aureus N315 # 1 141 1 141 324 197 64.0 5e-51 MEKLIVIDGNSIASRAFYALPLLSNSAGLHTNAVYGFTTMLLRLIEEEKPTHFLVAFDAG KVTFRHKDYTEYKGGRAKTPPELSEQFPLIKELMSAFGIRQFELEGYEADDIIGTLTKSA EQEGKDVLVVTGDKDMLQLVS Prediction of potential genes in microbial genomes Time: Sun Jul 17 07:28:45 2011 Seq name: gi|333608904|gb|AFDH01000005.1| Paenibacillus sp. HGF7 contig00090, whole genome shotgun sequence Length of sequence - 16670 bp Number of predicted genes - 19, with homology - 17 Number of transcription units - 9, operones - 4 average op.length - 3.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 250 - 299 3.1 1 1 Tu 1 . - CDS 318 - 905 395 ## Pjdr2_1097 hypothetical protein 2 2 Tu 1 . + CDS 1317 - 1730 368 ## Pjdr2_1096 hypothetical protein + Term 1740 - 1778 2.2 - Term 1728 - 1764 6.4 3 3 Op 1 . - CDS 1810 - 3513 1220 ## COG3858 Predicted glycosyl hydrolase - Prom 3534 - 3593 1.7 - Term 3536 - 3569 0.4 4 3 Op 2 . - CDS 3625 - 4059 327 ## COG0735 Fe2+/Zn2+ uptake regulation proteins - Prom 4120 - 4179 3.6 5 4 Op 1 . - CDS 4181 - 5401 919 ## GYMC10_5518 hypothetical protein 6 4 Op 2 . - CDS 5416 - 6003 538 ## PPE_03994 hypothetical protein 7 4 Op 3 . - CDS 6080 - 6424 136 ## 8 4 Op 4 . - CDS 6366 - 6977 485 ## COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog - Prom 7040 - 7099 6.9 - Term 7083 - 7114 1.5 9 5 Op 1 . - CDS 7128 - 7820 441 ## PROTEIN SUPPORTED gi|163764775|ref|ZP_02171829.1| ribosomal protein L16 10 5 Op 2 3/0.000 - CDS 7876 - 8352 351 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - Term 8386 - 8427 8.8 11 5 Op 3 21/0.000 - CDS 8458 - 9906 1433 ## COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) 12 5 Op 4 31/0.000 - CDS 9928 - 11385 1483 ## COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases 13 5 Op 5 . - CDS 11452 - 11781 352 ## COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit - Prom 11845 - 11904 1.9 - Term 11891 - 11937 2.3 14 6 Tu 1 . - CDS 11991 - 12368 427 ## GYMC10_5525 hypothetical protein - Prom 12451 - 12510 3.6 - Term 12480 - 12519 -0.8 15 7 Tu 1 . - CDS 12591 - 13787 1372 ## COG0006 Xaa-Pro aminopeptidase - Prom 13816 - 13875 3.9 - Term 14225 - 14266 4.1 16 8 Tu 1 . - CDS 14313 - 14690 227 ## - Prom 14716 - 14775 5.1 17 9 Op 1 . - CDS 14987 - 15610 779 ## COG0491 Zn-dependent hydrolases, including glyoxylases 18 9 Op 2 . - CDS 15625 - 16191 623 ## BBR47_32050 hypothetical protein 19 9 Op 3 . - CDS 16224 - 16670 199 ## PROTEIN SUPPORTED gi|223039927|ref|ZP_03610210.1| ribosomal protein L22 Predicted protein(s) >gi|333608904|gb|AFDH01000005.1| GENE 1 318 - 905 395 195 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_1097 NR:ns ## KEGG: Pjdr2_1097 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 1 192 94 286 289 169 46.0 4e-41 MDRQLYLEDSRERTQSLPEELRDRQLLSEFSLFLNKYLKSKSYILEEHLLDAYQNVLEAL KHWARIVIIEEGETVQEAVWNQVRPINSGVYKLYEELTTSKETLKQRIQLVLLACEFSVM SKMERCCKPLIQRLDSRPEPWSADELLEQPEIKILGNNLQQLLNKLVKKTLVKEVAVPAD AECSQLLLRYTLFKN >gi|333608904|gb|AFDH01000005.1| GENE 2 1317 - 1730 368 137 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_1096 NR:ns ## KEGG: Pjdr2_1096 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 1 114 4 116 117 130 62.0 2e-29 MLLKSSKINEFRLWGLLLTMGGMLIMIIGLAGVVFDWGAVGRIIAVIFLILGMISMLGSM AIYFWAGMMSTSAVALDCPECGKRTKMIGKTDRCMFCKTILTVDPSMAPAEAEIADEGNI RKPESGSAPSAIDSSKN >gi|333608904|gb|AFDH01000005.1| GENE 3 1810 - 3513 1220 567 aa, chain - ## HITS:1 COG:CAC1556 KEGG:ns NR:ns ## COG: CAC1556 COG3858 # Protein_GI_number: 15894834 # Func_class: R General function prediction only # Function: Predicted glycosyl hydrolase # Organism: Clostridium acetobutylicum # 282 562 167 440 446 121 29.0 3e-27 MKQPYMRGSKRKKSRFRSFILLLIVLAAIAYLVMNRLPNNNRITPSYAKLDKPVFYQGEA YESSALGSKEAMKLPLGLIAEWIDPAVRSEASGNSVILTTEQAVVRLQADKATASRNLKE IPLVSPMTKQEKEFYVPVSVLKELYGIQLREDEVTGAVSLFNPGEKIRWGTFRGKEGGEL RSGSSIRNPITGSLGDGERVMIWGEQNGWYKVQQTGGLAGFVKASLVTEEKGEAIPEFQP PAAKPRWKPQGKLNMTWEHVVTATPKTASIPEMPGLNVVSPTWFHLADEKGTIKNQADPD YIKWAQGRNYQIWALFDNSFEPKMTGKALESYETRLNMINQLLSFAKQYNLQGINIDFEN MNKSDGPNLVQFVREMAPLLHERGLILSIDVTAKSGSDAWSRVYDRPALAAAVDYMMLMA YDEHWASSPKSGSVASLPWVERSLKQILDEDKIPPSKLVLGIPFYTRIWTEEQKDDGTKV SSKAVFMEKPRKIIQEKGLTPEFREDTGQNYVEYKEDGKLNRIWLEDETSVKARLDIVSK YKLAGIASWRRGFEEPAIWKVIADALE >gi|333608904|gb|AFDH01000005.1| GENE 4 3625 - 4059 327 144 aa, chain - ## HITS:1 COG:BH0951 KEGG:ns NR:ns ## COG: BH0951 COG0735 # Protein_GI_number: 15613514 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+/Zn2+ uptake regulation proteins # Organism: Bacillus halodurans # 1 144 1 145 145 195 64.0 2e-50 MSEHLEEALAKLKTTGVRMTPQRYAILTYLFDSFNHPTADEIYKALESKFPNMSVATVYN NLKVFIDAGLVRELTYGDDSSRFDADLSDHYHARCQSCGKISDFDYSPIVDVEHVAAQQT GFRVGGHRLEVVGLCPDCAGKATH >gi|333608904|gb|AFDH01000005.1| GENE 5 4181 - 5401 919 406 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_5518 NR:ns ## KEGG: GYMC10_5518 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 2 402 5 418 439 154 25.0 6e-36 MIKAGRFTAAVLFVTVGVSMLLDRAAGTHMLGQLISWWPLLFVAAGLELILLQFLSNSRE TAVKLDPVAIFFSVVICAVVAGSQGFSQGLLSGLNLKVGALQSRSFDKEPAEFILTPAVT QVHAINTNGHIELAAGDGDAVRIQATVWVNDDDEQEARKIADASHVEQSIQGTELTLKAV GEEYTKAWFVKNKARIDITVTLPRTASLDYLAETENGAVHAAGLRTLNLFSAHTSNGSVE LTDIQCHVEAVTANGKISVSSISGAVKAQTVNGEVVIRETGAGVHAAASNGKVTLSSVKG DAVARTDNGSVKIKDVSGRIQAETENGSVRLESAEMAGDWQASTNNGRITIRLPGEAGFK VQGSARVLHTGLPVRLEEEKLSGTVGSGEHNLAIRTDGEISLETVN >gi|333608904|gb|AFDH01000005.1| GENE 6 5416 - 6003 538 195 aa, chain - ## HITS:1 COG:no KEGG:PPE_03994 NR:ns ## KEGG: PPE_03994 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 38 195 44 212 217 92 31.0 1e-17 MDDLKDPHFYEEQQRNYPPGPPYGVPPYPPYFQQPPKKKWLAMLLSLMMPGTGQFYVGMM QRGLFIMMLVIMDIFAIVLFATRDEGTNVAMITLFSLILPVIYFYNIFEALQLTDIVNRR RFYGESEELTDPLQKLAKGGNLGILLIAAGGFLFLASSKPVWLESFFKLFGSYFGAIVLI VGGIALFVWETKRKQ >gi|333608904|gb|AFDH01000005.1| GENE 7 6080 - 6424 136 114 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MPERTPKRPSQPRLHALHNSPELPPALQAELNGMKLLQPSANFTDRVMKDVAAGNTVPGF RPLAPKKRRHSELVNLFVATAATYIFINSGLLKLLNSHVAEWSEFVQHLSNRIG >gi|333608904|gb|AFDH01000005.1| GENE 8 6366 - 6977 485 203 aa, chain - ## HITS:1 COG:VC2467 KEGG:ns NR:ns ## COG: VC2467 COG1595 # Protein_GI_number: 15642463 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog # Organism: Vibrio cholerae # 2 178 3 185 190 114 34.0 1e-25 MEHLTDEQLVEQINRGEAEAYRVLVDRHKSYVYTLIYRMVNHRETAEDLSQEVFLKLYRS LSHFRGESKFTTWLYRMTVNLVTDYRRAQRRRPVVPLLDKLKTWLADRRTEPEQQAIRHE ESDSVHRLIAEMPEKYKLVMYLYHFKQLSYQEISDVTDLPLKTIETRLYRGKAMLKEKWL EVYPDARTNAQTSQSAPASRASQ >gi|333608904|gb|AFDH01000005.1| GENE 9 7128 - 7820 441 230 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764775|ref|ZP_02171829.1| ribosomal protein L16 [Bacillus selenitireducens MLS10] # 12 230 14 235 236 174 43 4e-43 MNDPWVIGQFDLTIRLILALVLGGLIGFERELSNQAAGFRTHILVCVGSALIMLLSIYGF SAFSKELTVRMDPSRLAAQVVSGIGFLGAGTIIRNGFSVSGLTTAASLWVVAAIGLAAGA GFYYAAILSTIMVILSLWILNKIEHKYFGAKKRHLIRVHAMDRPGNLGKISDILEKNKVE IRKFGVNEEERDERQTVMIYLNVIIPDYHLVPLLLDDIRHLDGVVGVTME >gi|333608904|gb|AFDH01000005.1| GENE 10 7876 - 8352 351 158 aa, chain - ## HITS:1 COG:BS_yqkA_1 KEGG:ns NR:ns ## COG: BS_yqkA_1 COG0454 # Protein_GI_number: 16079424 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Bacillus subtilis # 15 152 15 146 172 92 39.0 3e-19 MMRQIPLDDVQAVLELLALQTAAYLVEAGLIGYKDIPPLRDSPLTLRCSKETFTGYYVSD REEGREELAGAITWEENGTELTITRMMVHPRHFRQGIASALIRHAIASNPQAGRFVVSTG EANLPAVRLYEKFGFHRTGKRTIAPSVALVTFEKIQGI >gi|333608904|gb|AFDH01000005.1| GENE 11 8458 - 9906 1433 482 aa, chain - ## HITS:1 COG:BH0667 KEGG:ns NR:ns ## COG: BH0667 COG0064 # Protein_GI_number: 15613230 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) # Organism: Bacillus halodurans # 8 482 3 476 476 646 67.0 0 MSATETKYETVIGLEVHVELHTNSKIFCGCSTSFGAPPNTHTCPVCLGHPGVLPVLNRQA VEYAMKAAMALNCEIADVTKFDRKNYFYPDSPKAYQISQFDKPIGENGWIDIEVDGETKR IGITRLHLEEDAGKLTHVDGGYASLVDFNRVGTPLVEIVSEPDLRSPEEARAYLEKLRAI MLYCDVSDVKMEEGSLRCDANISIRPVGQEKFGTRAELKNMNSFRGVQRGLEYEEIRQAE VLNGGGEVVQETRRWDEGQGKTISMRGKEESHDYRYFPDPDLVNLHIDAGWKERVKSSIP ELPDARKARYVSQYGLPSYDAEVITASMKMADFFEESLKYTSDAKAVSNWIMGDLLGYLN AGGLDFGEIRITGQGLGEMIGLIEKGTISNKIAKTVFKEMIESGKAPQQIVEEKGLVQIS DEGAIKSVVEQVVAGNPQSVADYKAGKEKAVGFLVGQVMKETKGKANPGLVNKLIVETLQ AQ >gi|333608904|gb|AFDH01000005.1| GENE 12 9928 - 11385 1483 485 aa, chain - ## HITS:1 COG:BH0666 KEGG:ns NR:ns ## COG: BH0666 COG0154 # Protein_GI_number: 15613229 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases # Organism: Bacillus halodurans # 1 485 1 485 485 706 71.0 0 MSLFELRLQELHTQLLDKKVSVTELVDQSYRRIAEVDGKVKAFLKLDEENARRSAKALDE QIAAGESRGILFGLPAGIKDNIVTEGVTTTCASKFLSNYTPVYDATVMRKLKEAQALPVG KLNMDEFAMGGSNENSAFHATRNPWDLDRVPGGSSGGSAASVAAGEVYFSLGSDTGGSIR QPAAYCGVVGLKPTYGLVSRFGLVAFASSLDQIGPLTKNVEDSAYVLQSIAGHDPQDSTS ANVEIPDYVSALTGDVKGLRIAVPKEYLGAGVDPQVKEKIQEALRVLEGLGAVVEEVSLP HSEYAVAAYYLLASSEASSNLARYDGVRYGIRTDNANNLLEMYHMSRSEGFGPEVKRRIM LGTYALSSGYYDAYYLKAQKVRTLIKQDFDQVFANYDVVIGPTAPTTAFRLGEQVGDPLT MYLNDILTIPVNLAGIPAISVPCGLASGLPVGLQIIGKALDESTVLRVAHAFEQNTDHHK QRPQL >gi|333608904|gb|AFDH01000005.1| GENE 13 11452 - 11781 352 109 aa, chain - ## HITS:1 COG:BH0665 KEGG:ns NR:ns ## COG: BH0665 COG0721 # Protein_GI_number: 15613228 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit # Organism: Bacillus halodurans # 17 109 4 96 96 89 53.0 2e-18 MNLACTYKERCESSVSITIKDVEHVAKLARLDLSAEEKEQFTEQLNAILKYAEQLGKLDT EHVERTSHAMSVKNVTREDEVRPSLPLDKVMLNAPEEEDGQFKVPAVME >gi|333608904|gb|AFDH01000005.1| GENE 14 11991 - 12368 427 125 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_5525 NR:ns ## KEGG: GYMC10_5525 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 125 1 126 126 147 64.0 2e-34 MLSLGARVIIVEDRLEQNLPIGDYAYIIAYDRNNDNLFDYVIRVPKLNKHFFVPASDIEL EEVLLRQEVDRLEKEALIDFALATRNEELFNRVMNGEPVEIVAEKSKEVQSAEDFIKQVN LRAWI >gi|333608904|gb|AFDH01000005.1| GENE 15 12591 - 13787 1372 398 aa, chain - ## HITS:1 COG:MA4232 KEGG:ns NR:ns ## COG: MA4232 COG0006 # Protein_GI_number: 20093022 # Func_class: E Amino acid transport and metabolism # Function: Xaa-Pro aminopeptidase # Organism: Methanosarcina acetivorans str.C2A # 33 396 28 385 388 211 35.0 1e-54 MNKTDHPYAERQQRLQKAMQAGGIDGFLVNHHVDLYYFNGSMQNGYLFVPAEGNPLFVVR RSITRAQQESLAEVEELGSLRTLKDRLAQRYPGVFASGKEPVIATEFDVLPVQQFQRLEG AFTGVKWKDGSLLVKELRMIKSADEIALIRKAAGVIDRTLEKALAGIREGMPEFELMSLI ERENRLQGHLGLMRMRAYNSELITGCVAAGAAAAEPTYFDGPAGGRGLSPASPQSAGSRP IGRNEPILIDIGCNIEGYVIDQTRTAVIGALPEELRHAYEISEKILKEAEAMMKPGTVAE HLYLQSLDTASAEGLGGHFMGYGMDQVKFLGHGIGLEIDEFPVLAKGFKYKLEPGMVIAV EPKFTFPGQGVVGIENTYAITETGFEKLTVSREGVLVL >gi|333608904|gb|AFDH01000005.1| GENE 16 14313 - 14690 227 125 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MEHVKKTYTGPVYTPKQTGPMPQAVIPQPMPMPAPMPVQPTPLPYPGPLPSPVIQMPSIP IVNQVYVANYKPHHPHHPHHPHHHPVCHPIKPIAKKCWSDNSANILVLFILLVIISSGFG FVKKC >gi|333608904|gb|AFDH01000005.1| GENE 17 14987 - 15610 779 207 aa, chain - ## HITS:1 COG:CAC2272 KEGG:ns NR:ns ## COG: CAC2272 COG0491 # Protein_GI_number: 15895540 # Func_class: R General function prediction only # Function: Zn-dependent hydrolases, including glyoxylases # Organism: Clostridium acetobutylicum # 2 207 1 199 199 166 42.0 2e-41 MIRIETFKLGPMETNAYLLTDESGQKGVVIDPGMKPGPLLKRIKDMEIEAILLTHAHLDH IGGVQELRELKKCPVYLHDAESDWLGSPKLNGSARWPDVTDPIVVEPAEYALDEGQVLEF FGTKIKVLHTPGHSPGSVSLLFDNHLIGGDVLFRLSVGRTDLPGGDWNTLLDSIHGKLFE LGDDVTVYPGHGPKTTIGYEKQNNPYI >gi|333608904|gb|AFDH01000005.1| GENE 18 15625 - 16191 623 188 aa, chain - ## HITS:1 COG:no KEGG:BBR47_32050 NR:ns ## KEGG: BBR47_32050 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 1 187 1 187 188 265 63.0 5e-70 MSTNLSAVIGKGLTPQQFIDSMQRNQEAFLDWYGKFQWETEDDREFFESLNNRDDLRCVI IAAEWCGDVVRNIPVVFKALENSGIPVEVLIMEEHTDVMDQFLTFGGRSIPVVIITDTGG HVLGKWGPRPERVQAVMKAFKEGNPDREAPDYNDKIQAVRAEMLRQYGEGVGYQSVIVSE LRELLSTF >gi|333608904|gb|AFDH01000005.1| GENE 19 16224 - 16670 199 148 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|223039927|ref|ZP_03610210.1| ribosomal protein L22 [Campylobacter rectus RM3267] # 7 147 61 199 208 81 34 4e-15 AGAVFFGTVGGVIAQIFVYWVGRYGGRPILERYGKYIFINKHHIDVAETWFNKYGTGVIF TARFIPVVRHAISVPAGLAKMPLGLFTFYTTLAVIPWSMLFVYLGMTLKDNWESIDDIAG KYTVPILIAAIGLMIIYLVAKKMRAKRK Prediction of potential genes in microbial genomes Time: Sun Jul 17 07:29:36 2011 Seq name: gi|333608863|gb|AFDH01000006.1| Paenibacillus sp. HGF7 contig00132, whole genome shotgun sequence Length of sequence - 46732 bp Number of predicted genes - 38, with homology - 31 Number of transcription units - 25, operones - 11 average op.length - 2.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 4/0.000 + CDS 2 - 205 187 ## COG0350 Methylated DNA-protein cysteine methyltransferase 2 1 Op 2 . + CDS 165 - 1157 746 ## COG0122 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase - Term 1003 - 1038 3.1 3 2 Tu 1 . - CDS 1120 - 1800 548 ## COG2091 Phosphopantetheinyl transferase - Prom 1876 - 1935 2.1 4 3 Op 1 . - CDS 2360 - 2839 106 ## Bcer98_0168 hypothetical protein 5 3 Op 2 . - CDS 2851 - 3015 148 ## 6 3 Op 3 . - CDS 3012 - 3809 123 ## COG0789 Predicted transcriptional regulators 7 3 Op 4 . - CDS 3812 - 3961 127 ## - Prom 4035 - 4094 5.8 - Term 4389 - 4430 -0.6 8 4 Op 1 2/0.000 - CDS 4523 - 5809 1474 ## COG2252 Permeases 9 4 Op 2 . - CDS 5861 - 7132 1268 ## COG0402 Cytosine deaminase and related metal-dependent hydrolases - Prom 7304 - 7363 9.6 - Term 7375 - 7414 5.1 10 5 Op 1 . - CDS 7449 - 8282 944 ## COG0005 Purine nucleoside phosphorylase 11 5 Op 2 . - CDS 8359 - 9324 1069 ## COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain - Prom 9386 - 9445 6.8 + Prom 9529 - 9588 6.1 12 6 Tu 1 . + CDS 9611 - 11488 2353 ## COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases + Term 11531 - 11578 13.2 - Term 11519 - 11566 13.2 13 7 Op 1 . - CDS 11578 - 11982 355 ## EAT1b_1579 glyoxalase/bleomycin resistance protein/dioxygenase - Prom 12041 - 12100 4.3 - Term 12090 - 12138 8.2 14 7 Op 2 . - CDS 12153 - 12449 381 ## COG1359 Uncharacterized conserved protein - Prom 12558 - 12617 8.5 - Term 12577 - 12629 8.1 15 8 Tu 1 . - CDS 12645 - 14117 1098 ## COG2368 Aromatic ring hydroxylase - Term 14246 - 14295 12.9 16 9 Op 1 . - CDS 14307 - 16157 2002 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 17 9 Op 2 . - CDS 16239 - 16826 552 ## BBR47_12930 hypothetical protein + Prom 16774 - 16833 5.2 18 10 Tu 1 . + CDS 17045 - 19033 2053 ## COG1680 Beta-lactamase class C and other penicillin binding proteins 19 11 Tu 1 . - CDS 19038 - 19715 388 ## BBR47_57460 hypothetical protein - Term 20170 - 20226 15.9 20 12 Op 1 . - CDS 20339 - 23914 4061 ## COG4085 Predicted RNA-binding protein, contains TRAM domain - Prom 23952 - 24011 3.7 - Term 24072 - 24116 6.6 21 12 Op 2 . - CDS 24178 - 25851 1867 ## COG0366 Glycosidases - Prom 26046 - 26105 8.1 + Prom 26257 - 26316 4.9 22 13 Tu 1 . + CDS 26347 - 27351 681 ## BCE_3262 hypothetical protein + Term 27360 - 27394 2.5 + Prom 27466 - 27525 4.1 23 14 Op 1 . + CDS 27570 - 28313 693 ## COG0421 Spermidine synthase 24 14 Op 2 . + CDS 28451 - 28963 585 ## PPSC2_c2273 protein + Term 29015 - 29048 5.4 - Term 29141 - 29177 -0.7 25 15 Tu 1 . - CDS 29376 - 29921 207 ## COG1396 Predicted transcriptional regulators - Prom 29970 - 30029 5.6 26 16 Op 1 1/0.000 + CDS 30255 - 31151 498 ## COG0491 Zn-dependent hydrolases, including glyoxylases + Prom 31172 - 31231 3.0 27 16 Op 2 . + CDS 31336 - 32190 404 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) 28 17 Tu 1 . - CDS 32541 - 32672 72 ## - Prom 32883 - 32942 3.5 29 18 Op 1 1/0.000 - CDS 34228 - 35259 254 ## COG0778 Nitroreductase 30 18 Op 2 . - CDS 35313 - 35795 308 ## COG1846 Transcriptional regulators - Prom 35887 - 35946 4.2 - Term 36380 - 36430 -0.8 31 19 Tu 1 . - CDS 36480 - 37031 58 ## BCA_A0209 hypothetical protein - Prom 37172 - 37231 6.5 + Prom 36763 - 36822 3.5 32 20 Tu 1 . + CDS 37020 - 37163 65 ## 33 21 Tu 1 . - CDS 37414 - 37959 -63 ## BCA_A0209 hypothetical protein - Prom 38005 - 38064 4.1 34 22 Tu 1 . - CDS 38221 - 38946 -104 ## Fjoh_3534 hypothetical protein - Prom 39097 - 39156 2.3 + Prom 40284 - 40343 5.2 35 23 Tu 1 . + CDS 40363 - 40512 56 ## 36 24 Tu 1 . + CDS 43883 - 44017 162 ## 37 25 Op 1 . - CDS 45242 - 45772 -64 ## 38 25 Op 2 . - CDS 45842 - 46120 159 ## gi|229124034|ref|ZP_04253226.1| hypothetical protein bcere0016_43190 Predicted protein(s) >gi|333608863|gb|AFDH01000006.1| GENE 1 2 - 205 187 67 aa, chain + ## HITS:1 COG:STM1659 KEGG:ns NR:ns ## COG: STM1659 COG0350 # Protein_GI_number: 16765003 # Func_class: L Replication, recombination and repair # Function: Methylated DNA-protein cysteine methyltransferase # Organism: Salmonella typhimurium LT2 # 1 54 115 168 171 82 68.0 2e-16 VGSPAAVRAVGTANGANPVPIIVPCHRVIGKNATLTGFRGGLQVKEELLRLEGFHDYTAK GHARFQF >gi|333608863|gb|AFDH01000006.1| GENE 2 165 - 1157 746 330 aa, chain + ## HITS:1 COG:BS_alkA KEGG:ns NR:ns ## COG: BS_alkA COG0122 # Protein_GI_number: 16077248 # Func_class: L Replication, recombination and repair # Function: 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase # Organism: Bacillus subtilis # 12 312 2 302 303 274 45.0 2e-73 MTIRQKDTPVFSFDEQTGIAQIETPAAFSYPETLLYLTRSPLECLHSVENRRIYKLLEAG KELLPVEISEPGPGRLQLLFLQGPPADPNAVREAVAYTAEWMDLARDMTPFYAVAQSDPL LGPLASGYYGLRIIGVPHLFEALCWAIAGQQINLTFAYTLKRRLVENYGKKLVWEGRTYW LFPKPGDLAGVTVEELRQLQFTGKKAEYILHVAGLMDSGTLSKEALLASGSYEAAERTLL AIRGIGPWTAHYVLMRCLRNPAAFPIGDAGLHNALKQLLRRTQKPALEEIRQLFAPWRGW EAYAVFYLWRSLLPEGSLAIQTPDLPDAAR >gi|333608863|gb|AFDH01000006.1| GENE 3 1120 - 1800 548 226 aa, chain - ## HITS:1 COG:BS_sfpm KEGG:ns NR:ns ## COG: BS_sfpm COG2091 # Protein_GI_number: 16081163 # Func_class: H Coenzyme transport and metabolism # Function: Phosphopantetheinyl transferase # Organism: Bacillus subtilis # 1 224 1 224 224 172 38.0 5e-43 MDIYAINIRFDEEEIIQHADRLMVHLSEEKRAKAQRFHRMEDRVRAVAADALARWCLCRK LAAANPELRFGTNAYGKPYVTAPRTGVHYNVTHSGCWVAAAVSEEEVGIDVEQIQQVDLD IAERFFSAAEKADLFSLPPEERLDYFFDLWTLKESYIKAVGKGLSIPLDSFAIRKRESGV FELEPQPTHVFKQYELDGPYKLSVCSTSDNFPDEVTLLRLEDLVFE >gi|333608863|gb|AFDH01000006.1| GENE 4 2360 - 2839 106 159 aa, chain - ## HITS:1 COG:no KEGG:Bcer98_0168 NR:ns ## KEGG: Bcer98_0168 # Name: not_defined # Def: hypothetical protein # Organism: B.cereus_NVH # Pathway: not_defined # 1 159 60 218 218 185 68.0 6e-46 MLGMDMLLAAFSSIFQNRIVSWVTLIIGGILFIASFYYPESKKSDLPRSKSKSKTSMIAL GFSTSLIEVGTALPYFAAIGLMTTSNLAVFQWLPILAGYNFIMVLPPLIVFSLHLLLGRV MQRPLEKLQIKISKHSGSAISWIMCIVGLILIFNSLDYL >gi|333608863|gb|AFDH01000006.1| GENE 5 2851 - 3015 148 54 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSLELLVSVGGLALLDTLSPTTLGVTVYLLLTEKERLSTRLMIYLVTVAAFYFL >gi|333608863|gb|AFDH01000006.1| GENE 6 3012 - 3809 123 265 aa, chain - ## HITS:1 COG:BS_mta KEGG:ns NR:ns ## COG: BS_mta COG0789 # Protein_GI_number: 16080713 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus subtilis # 11 121 4 112 257 78 34.0 1e-14 MFIVGGVSLIHIKEVAKQTKITVRTLRYYDQIGLLTASSKTEGGHRLYSEEEMKKLQYIQ FFKGMGYKLQFIKDILSDSNWNWPNSLKSQLAYILEEQERLREIESSVRELINGIAVEGG DEWLAVQKLIQLSSQNKKRLITFKENVFNDKEIKLWTKLPKMKGEDPDSLEWIALLGQIK RYTKDDPASSRVQNIIRRMLEKQMEEFKDENEFINKLWDLRKSPKQSEKLGLYPIDKEVL DFMERAYDIHISCLQDSSFEQGGES >gi|333608863|gb|AFDH01000006.1| GENE 7 3812 - 3961 127 49 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKQGDIIIYACVIIGAGIGLMLDQAFPGVLVGLGLGYLIKYAVYKDKEN >gi|333608863|gb|AFDH01000006.1| GENE 8 4523 - 5809 1474 428 aa, chain - ## HITS:1 COG:BH2030 KEGG:ns NR:ns ## COG: BH2030 COG2252 # Protein_GI_number: 15614593 # Func_class: R General function prediction only # Function: Permeases # Organism: Bacillus halodurans # 1 422 2 429 432 340 49.0 3e-93 MIRGLNRYFQLEAHGTTWKRELMAGLTSFFTSAYIMLVNPLILQDTGMPLSAGVLATIAA TVIGCLMMALWANAPIIVIPGMGLNAFFTYTIVQSLGLSWQQALAVVVVSGVIFLLASVS SFGGKILSAVPASLKHGITAGIGLMLTFIGLQKGQIIQPDSVNYVALGSFTSPVTLATLI GLAVTFMLFVRNIKGSLLIGIGFTSLLTLGLAGTGDVADKAVDLKAYGQVLGAADFSVMQ IPFWIAVFSMTMIVLFENMGLLSGMLPDKEKFPKAYRVVAVSTIVSGFFGTSPTIASAES TSGISEGGRTGVPPLVTAVLFLLSALALPVIGLIPGNAVAPVLMIIGALMMMSVKDIPFN DFSEYLPAFLIVVCIPLTSSIADGLAFGFIAYPLTKAAIGQWRKCSPLLYAIAALFVLNF VASAVFVH >gi|333608863|gb|AFDH01000006.1| GENE 9 5861 - 7132 1268 423 aa, chain - ## HITS:1 COG:SP1356 KEGG:ns NR:ns ## COG: SP1356 COG0402 # Protein_GI_number: 15901210 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Streptococcus pneumoniae TIGR4 # 2 407 13 418 419 374 48.0 1e-103 MDESSRQYKSGLMAVSGDTIDYIGDHSEQRLAAADRVVDLGGKWVMPGLVNVHSHIVMTI LRGIGDDMLLKPWLETKIWPMEAKFTPEIASVSTRLGILEMLKSGTTTFSDMFNPNGIDL DGIMQEIADTGIRGAFSHTIFSLGTERQQRDNIAGAERFAKRFRTFADGRLTTMVAPHSP YACTPAALEESARIAAENGLMVHIHVSETDLEIRDIESRYGVRPVEHLRRLGLFDRPTVM AHGVVLNEEERAILHQYDVRVAHNPISNLKLGSGVADVAALLEAGVKVGIATDSTASNNN LDMFEEMRTAALLQKGIYKDASKLPAETVLALATRVGADVIGMGHTGSLEPGKKADFITI DPSDKPHLQPLEQAFSHLLYAASGRDVCDVYVGGAAVVRDGSCLTIDEEKILAEANRLQA KLR >gi|333608863|gb|AFDH01000006.1| GENE 10 7449 - 8282 944 277 aa, chain - ## HITS:1 COG:BH1531 KEGG:ns NR:ns ## COG: BH1531 COG0005 # Protein_GI_number: 15614094 # Func_class: F Nucleotide transport and metabolism # Function: Purine nucleoside phosphorylase # Organism: Bacillus halodurans # 9 272 6 269 272 354 65.0 1e-97 MTQTTQTNHVSQAAAYIKDKLSFTPQVGLILGSGLGVLADEIENPVVIPYHEIPGFPVST VEGHAGRLVCGMLQGKPVVAMQGRFHYYEGYAMNKVVFPVFVMRQLGVKTLLLTNAAGGV DVSLEPGDLMLISDHINLMASNPLIGPSDAQLGPRFPDMSEAYSKRLREAARETAGSLNM SLKEGVYAGLTGPSYETPAEIRMVRALGGDAVGMSTVPEAIAASYAGLEVLGISCISNMA AGILEQPLSHAEVMETTEMVRANFIALIKGIIGRSDL >gi|333608863|gb|AFDH01000006.1| GENE 11 8359 - 9324 1069 321 aa, chain - ## HITS:1 COG:BS_deoR KEGG:ns NR:ns ## COG: BS_deoR COG2390 # Protein_GI_number: 16080994 # Func_class: K Transcription # Function: Transcriptional regulator, contains sigma factor-related N-terminal domain # Organism: Bacillus subtilis # 1 310 1 310 313 318 51.0 7e-87 MEDEKLRKIIEVAKLYYQLDYNQNQIAQMLGLSRPTVSRLLQQAKTEGIVKIHIADPSED CEALAVTLREKFHLKKAVVAFVPTYDDEIVKKFIGEAAAQYLMTTVKDKDIIGASWGTTM YQVAANLQQKGLTDSRVVQLNGGVSHADITISPSEIIYLFSRAFHVTPYFLYLPAIVDHS LVKQAIQSDRHIRRVLDLGKLANIAIFTVGLPDAESVLIQSNYMTEEDLEIIQSRAVGDI CSRYFDDKGQICHTSLNDRTIGIELEDLKEKEQAILVAGGMRKVNAIYGALRGGYANTLI TDQMTAKALIAKHDGGQTATA >gi|333608863|gb|AFDH01000006.1| GENE 12 9611 - 11488 2353 625 aa, chain + ## HITS:1 COG:BH0026_2 KEGG:ns NR:ns ## COG: BH0026_2 COG0737 # Protein_GI_number: 15612589 # Func_class: F Nucleotide transport and metabolism # Function: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases # Organism: Bacillus halodurans # 152 621 2 466 471 369 42.0 1e-101 MFKGKFVSALSVSAIISSILATSIYAQTAPQLSHTDWMQKKAIIEGYEGGGLALDRSVST AELATILARSKGASLTTDASISHWASASLSWAKKQGLLSEPEVKTPDAVLSAAAVTEIAK KAGYDIKLTAGADSVSRKDFLQALGQAITLHITIGHTNDVHGHIEENKSLKEFGYAKIAT LVKEMRAENPNFMLMDAGDTFQGTVFANLFKGESIVPLLNYLDYDAQAAGNHEFDFGYEQ LLKLKGMVDHPIISSNVFKKEDGTELLQPVHYTEIGGKKFAILGFTTADTPIVTHPDNVK ALEFKDPIEVAKQLVPELKKKVDHVIVVCHNGIEVDREMAKTVPGIDLIIGGHSHTQLTK PELVNGTYIVQDWEYGKSMGRADLYYYNKELVGFTGGLIEYDEKVEPDAEMAKLVKDIVG RVDGQLDVKIAKTDVQLDGERTLVRAKETNLGNLIADAMLAKTKTIGGQEADVALINGGG IRTQVKAGDITKKNLYDVLPFPNTLVVLELTGSELRAALENGVGKVESGEGRFPQIGGMT FTYNRSKPAGERVVELKVKGEPVDPDKTYKLATNDFIAAGGDGYAMMKDKKVFDSGFTLY DVVEEALIKQGTVNPKVEGRIVEVK >gi|333608863|gb|AFDH01000006.1| GENE 13 11578 - 11982 355 134 aa, chain - ## HITS:1 COG:no KEGG:EAT1b_1579 NR:ns ## KEGG: EAT1b_1579 # Name: not_defined # Def: glyoxalase/bleomycin resistance protein/dioxygenase # Organism: Exiguobacterium_AT1b # Pathway: not_defined # 4 131 2 128 132 152 60.0 3e-36 MSAKVIHHICIQTSCYEQSLAFYRDALGFEVVQETPDFHTRAYNSWLRLGEFYIELQTGK AGEELQPVNTSSRGIVHFCLWTEDLEEEVRRLKDSGAEFRLKNGREIYTVENGKLCKLTA PEGTIIELRDTKGI >gi|333608863|gb|AFDH01000006.1| GENE 14 12153 - 12449 381 98 aa, chain - ## HITS:1 COG:BS_ycnE KEGG:ns NR:ns ## COG: BS_ycnE COG1359 # Protein_GI_number: 16077455 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 1 88 1 88 95 82 46.0 2e-16 MIIIHAAMRLQPGKDEAFLKEILPLVEASRGEGGNVSYDLYKHAEKEHAYTMVEVWKDEQ AVASHNSSAHFKAFTGKAGEFLAAPLDVKVYAAEAVKV >gi|333608863|gb|AFDH01000006.1| GENE 15 12645 - 14117 1098 490 aa, chain - ## HITS:1 COG:BH3836 KEGG:ns NR:ns ## COG: BH3836 COG2368 # Protein_GI_number: 15616398 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Aromatic ring hydroxylase # Organism: Bacillus halodurans # 1 484 1 479 479 384 41.0 1e-106 MPVKNGSEYIERINRHLPGVWIAGERVRGLISEHPAFKGLMATQASMYDMQQAEEWQAKM TYASPSTGDPVGLSFLQPKTKKDLALRRQMMQAWASVHHGFLGRAPDYMNTAIMAFGAAA GLIEKENPEYGDNLRRYYEYCRENDVTLSHVFIQPKAARMSTFLRTFEEHAAARVVEKNK DGIVVRGAFLLDTQGATSDEILVFPAPFPYAGSEDSPHAFAFAVPSNLAGVSFVCRESFV GGESAYNYPLSSRYEEMDTLVLFEDALVPWDRVFICGDERMAWQLVDESRFHIHAGMQIM CKNIAKTEFILGTLERMVEAGGLDSHSHVTEKVTEVIVALETLKALQVAAEKGASRDKWG SMLPDPKPLLAANSYFPKVYPRFVEIIQLIGASGLIMIPDEADFGTEIGGQLNLYLKGID LSAEENVKLSRLAWELSVSAFGGRQAVYERFFFGNAAVVDGRLYNTYKEREALGRRVQDF LSGKDGKGLG >gi|333608863|gb|AFDH01000006.1| GENE 16 14307 - 16157 2002 616 aa, chain - ## HITS:1 COG:CAC1455 KEGG:ns NR:ns ## COG: CAC1455 COG2197 # Protein_GI_number: 15894734 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Clostridium acetobutylicum # 383 616 1 218 225 154 34.0 5e-37 MFEAVKQWIWYEWALFIIRVLIFISTMITTVQFQNDLNLPLWLVLCWQISAFSVPWILLQ VNSTAYVVLELILSGGVSIYLTSLFPEAYLTFLVPAALIAANSANKTYRWSGPAAVLLVP LVMVELSKQAKPFWEMMSQIGLAYAIGYAFHLLVVNYRQNEIIRSQNSVLEQYMSQVERV TQLEERNRLAKDLHDTMGHSYTSLLMGLETLRPDIATEEGEHKLKALLDVTRKSMGEVRD FLHGMGASEEMSSLRQALEQLAREFEASAGVTVSLRVLGEETALPQQAKMTFYRCLQEAL TNAVRHGRATEIQAALQFEPRQTRLEVRDNGEGSESLPEGFGLKAMKERAASLQGQISVY SEKGVGTTVTCTLPRQAEPGGEVIRLLIADDQAFIRESLRTLLQGQKDMTVAGLAGDGEQ AVELCAELEPHLVLMDLDMPKMDGTAATRTIKQKWPHVRVVILTTFQAPDKALEVLRSGA DGYLLKSIEPKELAETIRLVHQGGTMIAQDLSTKLFGELGEAAKATGRNGVSGTSEPAET VGLPERAAPAGESYELTPREIEILRMLSKGLRYKSIASKLYLSDGTVRNYASTVYAKLGV RNREEAVEKAAEAGLL >gi|333608863|gb|AFDH01000006.1| GENE 17 16239 - 16826 552 195 aa, chain - ## HITS:1 COG:no KEGG:BBR47_12930 NR:ns ## KEGG: BBR47_12930 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 1 193 1 193 195 187 50.0 2e-46 MKKEIVQSLQDIYFLLLTFITGVFYFCFYLVSLVFSLSMAFTLVGLPMITYVMRSTRTFA RYERIQTKIYTDLSIEPYERPQKSEGSVWQQAKEELADRRNWTIIGWLMLKFPLGLLALL LAVLCYIAPVIFILVPLAVPYMDLYFAGIRVDTFVKSLFVMAGGVLLAFAGAKLGRSTAL LIGRYIRHMFKRLHA >gi|333608863|gb|AFDH01000006.1| GENE 18 17045 - 19033 2053 662 aa, chain + ## HITS:1 COG:MA1345 KEGG:ns NR:ns ## COG: MA1345 COG1680 # Protein_GI_number: 20090206 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Methanosarcina acetivorans str.C2A # 6 499 28 528 671 215 31.0 2e-55 MKKNVRHASLALLVLSSSVFTACTPAAKPHEATQPGQGSVQGPVDAKEVEAFADPVFAEK MKKYNVNGSSFVVVKDGKVVLSKGYGYADKEKNIPVDKDTVFQIGSVTKTFTALAALQLV DEGKMELRGDIEPYLDGLKVPNKTGTPLTLFDLLTYTSGVDYPDITTYVGPEFVDQDIPT KPFLAEHMPTVVRKPGEAYTYDNFGFLLAGYAVQNVSGLRYDKYMQEKVFKPLGMNSTSV RFTPELLARMAVHYDPAGKPMPTAGPAPSDGPQGSILSTAEDMSNYLIMQLQKGKYDGKQ IVSPKSIDLMHNYQVFSEKSMPITTVGFEGYFPELMNGHHVVLKGGSMPGHQSLIVLLPD KNTGIYMSYNNDSMMSVEVYEEFMDHYFPAEKEAEKPTYLPLNEKEAQRYTGMYQNTRML FLKSKFSYDNGNLIMETNSSGKHTLKMIHPLLFEDESGNKLAFKKDSHGQIEYFYYSNRN SMDFASDAQKMHEKSPFEDVAKDSPYKIHIDNMNTWGIMGAKTGNSFEPKGVMTQGEFAD VLLRAHGWYGIVYSVEGNKKWMVAGIPGFDRNAPVTRQMAAAMIQNMKQLKPASEIKLTG PTDEWAVKAVTALVSQGIVDPDASVNPDGSVDFRSKQPLLRQEAAVLLDKTFGCYTLPLK VQ >gi|333608863|gb|AFDH01000006.1| GENE 19 19038 - 19715 388 225 aa, chain - ## HITS:1 COG:no KEGG:BBR47_57460 NR:ns ## KEGG: BBR47_57460 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 12 222 24 234 238 181 44.0 1e-44 MISTDRSGMDFKAVPSAGLKFLELDMPVLGNLHLHFDAGEEAYVKLSGEPRLFPAYTARE GDRLVLKGRNLPAYLRHGQKERLRIDIHLPEDTAVDLTFLAGVVSLNGGYGPLSVKGFSG EVSGYTGSDRVRVRLRCGDVSLAGLPGEADIRIGLGSSTLRWSRLLGTERVRVRCGFGGV ELLVPPDWAQKEEQGGFFKKKRLHAPPGASVSAAVWFGGLDVGSG >gi|333608863|gb|AFDH01000006.1| GENE 20 20339 - 23914 4061 1191 aa, chain - ## HITS:1 COG:BH1015_2 KEGG:ns NR:ns ## COG: BH1015_2 COG4085 # Protein_GI_number: 15613578 # Func_class: R General function prediction only # Function: Predicted RNA-binding protein, contains TRAM domain # Organism: Bacillus halodurans # 502 723 90 311 430 129 39.0 5e-29 MKKRFAGWKAKVFKASLALSAALSVQVLTDGWQVKAEGPADPAPYIEAKVVNENAGKKVL FDNTHAQTAGAADWVIDGGFSDFGNALASNGYYVKELRKSTPITLADLSGYDVFVVAEAN IPYKASEQAAMAAYVEGGGSIFFIGDHYNADRNKNRWDGSEVFNGYRRGAWDNPAKGMSA DEAGSAAMQDVVSSDWLGSQFGVRFRYNALGDITANNIVAPEQAFGITKGVSSVAMHAGS TLAILDPAKAKGIVYLPQTKAAWPNAVDQGVYNGGGVAEGPYVAVAKKGAGKAAFIGDSS PVEDATPKYLREDTGAKKTTYDGFKEANDGVLLVNTINWLAKKESYTSLSQVSGLQLDQP TALLPFEAPAASTEPQPEPWAAPNAGYKWYDRGTFKAGSYGSGGGTTVPSNPAYSFVRQA TLPNAADFQIRVVVDNLPANTTVSGFSAGVYLATGGTQVAQVRNADGTWPASYGYSAAFS LTSDSKGHAYKDLTVRIKPGTTGAANLRLRQNGTNLKTEAVSIANVPAEPLPDEQGPIPA KITVAEARSKGEGALVTLEGVVTTEPGIFGGQSFYLQDATGGIYVYQNLGGFHAGDVVKV TASTAVYNSELELTDPVEVAKTGASAVPAPVKADAVTAGNQGQLIELSGVTIGAVKSAVP EGSFEFDAVKGDVVNHIRVDARTGLTQASFPYKEGQTVDIRGAAAIFKGAFQLKPRGLSD FTAQADTTAPVTAATLSETSNAEGWFNKNVTVTLTARDNEGAAVLTQYDINGGEAKGYSE PFTVETEGTNIVRYYSTDAAGNKEEAKTLNIKLDKTAPAASLTLNGQAVSDVTDKDSLTF NLLSTDAGSGIADRKLLLDGKEIADGVTLKAGELAVGPHNIQYRVTDLADNTAADTLSFD VKASLTLSQVELTSGKTVLKPGETTDLRVSGTWSNGTAADLTVAQVVYRSSNEAAVTVNA QGRLTAVGEGTADLTASVTLGGVTVVSGAVTVTSAKPLATGVPGKPVLSSNNGYDGLKGG SFTVTMNMWWGANGSVYKLYENGVLIGTQTLKDASPVAQTVKTDIKGKANGTYTYTAELI NAYGTTVSSPLVVNVTNAAPGKPVLSQDNWDGDGTYKVTMNMWWGTNASEYRLFENGQLI ETKALEEATPSAQSAVTSLTGRAPGTYEYRAELVNASGVASSEKIVVKVIR >gi|333608863|gb|AFDH01000006.1| GENE 21 24178 - 25851 1867 557 aa, chain - ## HITS:1 COG:BH0413 KEGG:ns NR:ns ## COG: BH0413 COG0366 # Protein_GI_number: 15612976 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Bacillus halodurans # 456 543 863 950 958 82 42.0 2e-15 MSLTKKSMKKAALQLLGFILVLTTVLGWGPARAGAAVAGDFQASVMGPLTKVTDWSAFKN QLLTLKNNGVYAVTTDVWWGMVESAGDNQFDWSYYKTYAGAVREAGLKWVPILSTHKCGG NVGDDCNIPLPNWLWAKGTADQMQFKSETGYVNNEAVSPFWSGLGTQYSELYASFAANFA SYKDIIPKIYLSGGPSGELRFPSYYPAAGWSYPSRGKFQAYTDTAKQAFRTAMTAKYGSL SGINSAWGLSLTSIDQISPPNDGDGFYTNGGYKTAYGKDFLSWYQSVLENHLGVIGSAAH KNFDSVFGVPIGAKVSGVHWQMTNPSMPHSAEQAAGYYDYNRLLQKFKDSNLDLTFTCLE MSDSGSAPNYSMPSTLVDTVAGIAGAKGVRLNGENALPASGTAAFQKIEEKLTRFGFSGF TLLRLANVVNADGSVTGEMANFKKYVISHAGTGSGGTNNTVTVYYKKGYSSPYIHYRPAG GTWTAVPGVKMADSEISGYAKITVNIGAATQLEAAFNDGNNNWDSNSMNNYFFGTGTSTY TPGTGGAAGTVKAGGPS >gi|333608863|gb|AFDH01000006.1| GENE 22 26347 - 27351 681 334 aa, chain + ## HITS:1 COG:no KEGG:BCE_3262 NR:ns ## KEGG: BCE_3262 # Name: not_defined # Def: hypothetical protein # Organism: B.cereus_ATCC10987 # Pathway: not_defined # 2 321 1 326 410 176 34.0 2e-42 MLRKTFLSAALSLSLLAAAVIPSAVGAKPGKEKPLLAFPVISDIHIQSWDPQSHQKFKAA LSDLHTLDPDADALVINGDLTNGMPADYAKLSELMEQNPHPRKVFYTMGNHEYYKAWIDR NGSWNADAFPNGETEQASIGRFLQLSGKKKVYGDQVVNGFRFIFLGSEQYRQSDPSNLED AWLSGEQLEFLKASLRKGAASGKPVFVFLHQPLPGTVSGTSFCCVNNRAIVQHEELRKIL SAYPQVIFFSGHTHWELKLPGTLVQDKFTMVNSSSVIQPWTDNGNGGEMLTGPDESEGLY VEVYKDKVSIKGRDFYRQRWIPEAQFTLPRSVED >gi|333608863|gb|AFDH01000006.1| GENE 23 27570 - 28313 693 247 aa, chain + ## HITS:1 COG:NMA1087 KEGG:ns NR:ns ## COG: NMA1087 COG0421 # Protein_GI_number: 15794035 # Func_class: E Amino acid transport and metabolism # Function: Spermidine synthase # Organism: Neisseria meningitidis Z2491 # 25 179 23 184 263 60 25.0 3e-09 MQLLFEETGPGHVIRVYDTNELYGEKGRFRVLQFANDAIQGALDLNNPGRILFEYPRALV HLMEMNRPAFENVFMIGHGIGTLAGHYPQKRFTIAEHDPKVVELSRTYFGCDQENIILGD GREILDQEPPEAYDYVILDAFTEKGTPRHLVSRQFFKLSRSKLNPDGAILMNLFGKSMRD NHISAIYTTLGEVFSHRKAFYLPSEGTRDTLNILLAGGSSPLTYQARHMAGFVEFEPEQG YLITDRL >gi|333608863|gb|AFDH01000006.1| GENE 24 28451 - 28963 585 170 aa, chain + ## HITS:1 COG:no KEGG:PPSC2_c2273 NR:ns ## KEGG: PPSC2_c2273 # Name: not_defined # Def: protein # Organism: P.polymyxa_SC2 # Pathway: not_defined # 1 170 1 169 169 156 44.0 3e-37 MKKMVFFTTLMVSMLAFVTSANAVDSEYSPVPRSEDTVTVMISSLENKNGSLYLQGDQIE WYEGAEADQKFIEHETDIGDMTHAPDGYYIVNDQEKLESFEIDPNAQVLMQLYDHDGTYE GVDVKWNEEVPLTKFLAIYPNNNLLDVSTFPFHLTIKDHKVVKIVQQYIP >gi|333608863|gb|AFDH01000006.1| GENE 25 29376 - 29921 207 181 aa, chain - ## HITS:1 COG:FN1928 KEGG:ns NR:ns ## COG: FN1928 COG1396 # Protein_GI_number: 19705233 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Fusobacterium nucleatum # 3 181 2 184 184 97 33.0 2e-20 MNSIGETIRSTRKKQKLTLKKVAEAASVSLSFLSEIERDKANPSISVLKRIANALNVNFT NLFGEEKRSIVVRKNERKPLVHSEGSRITWYALSRGSSNKMGPIWGVLEQGATYGDIGVG HSDGEEFLFVHSGRLEFVLGNERYTLEEGDSIYYDARIPHSYKNIWDGETMLIAVSTPPT F >gi|333608863|gb|AFDH01000006.1| GENE 26 30255 - 31151 498 298 aa, chain + ## HITS:1 COG:mlr1349 KEGG:ns NR:ns ## COG: mlr1349 COG0491 # Protein_GI_number: 13471390 # Func_class: R General function prediction only # Function: Zn-dependent hydrolases, including glyoxylases # Organism: Mesorhizobium loti # 68 295 69 278 287 88 26.0 1e-17 MSTKIPKVYQVGDVTVTRVTEMMLDGIPPEVYFPGSWDPMFLEENRNSLSAGLIDGNSQL IVSIGTWVVKTPKHTILIDTATGNDKNLPLNPDLANLQLPYLERLKEAGVTPEEVDYVLL THLHVDHVGWNTKLVDGKWVPTFPNAKYVFPLAEQQYYSSEASHNKANEVNFNVYEESVL PVVEAGLTQTIGPEGGEFLDIFKFIPTPGHSIGQMSIGLKSGGKEALFGADVMHHPLQVY NPEWNSMYCEFTDQAHISRLRVLEFIADRPVIYFSTHFPESAAGYVTRSGDGYKWDFI >gi|333608863|gb|AFDH01000006.1| GENE 27 31336 - 32190 404 284 aa, chain + ## HITS:1 COG:SMb20010 KEGG:ns NR:ns ## COG: SMb20010 COG0596 # Protein_GI_number: 16263761 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Sinorhizobium meliloti # 1 279 61 353 355 93 27.0 5e-19 MVHGATYPICSLYDVKLDGFTFLDYLASHGYDVYAVDVRGYGGSTRPPEMEQPAALNPPL VRTETGVRDFGAALDYVLKRRNLMKVNVLGMSWGGTVAGAYTSQNNDKVNKLTLVAPQWL SSKPIPIDTGGPLGSYRLVAVGSTKERWLSAAPEHKRGDLIPDGWFKQWVKATLASDPGS LTNHPEHIRANNGPILDIREYWTAGKAFYDPKEITVPVLLVHAEWDIDVPLKLAQNFFTS LTGAAYRRWVEIGEGTHMVLLEKNRLQAFQAIRGFLDEAYEPVK >gi|333608863|gb|AFDH01000006.1| GENE 28 32541 - 32672 72 43 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MDWITIAAKKNAANLAEFFCVFLNHRKIMEIIRVLANKSLSSV >gi|333608863|gb|AFDH01000006.1| GENE 29 34228 - 35259 254 343 aa, chain - ## HITS:1 COG:BS_yfhC KEGG:ns NR:ns ## COG: BS_yfhC COG0778 # Protein_GI_number: 16077915 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Bacillus subtilis # 7 186 17 194 194 110 31.0 5e-24 MDFSQTIRERRTIRRFNATPVEPELLIYLLNGAASLYEAEGTPRWRCIYAGTPESRQRLV ESMIAKMKESKLGKLLPVKMIDFLTKRITDIPAHLIFIAESAANRRQSDENYAAVCSVMQ NFQLLGWERGLGMLWDTDPMFQSESFLAEIGLREGERLAGILHAGYFDKAPRSRRRTPAK QKWTTIGGGGEPDGPQLDNVRIPAQSILEMLNDAVWAPNDGLREPWRFIYVTGGEAAGKL RVSYGDASPAFLLIVAKEEADPHKQEEDYAAVCCLIQNFQLLAKSKHWHVRRTVPEWIYD REWCKPFGIRPQERIVAVLELGGDAPSSESAPAAPLLLNISHL >gi|333608863|gb|AFDH01000006.1| GENE 30 35313 - 35795 308 160 aa, chain - ## HITS:1 COG:BS_yvmB KEGG:ns NR:ns ## COG: BS_yvmB COG1846 # Protein_GI_number: 16080561 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 8 154 6 152 169 125 42.0 3e-29 MDYPESIKALIYKQLLHLFHLQEQRLELELKEIKDLVQLHQLKGVPGSLSAIHVLDCIGN HEPINHSAIVDKLNLSKASITKINKKLLALGLINRTQLNDNRKEVYFRLMPLGKQLFEMH RALHEAEEQSFIRFLDSYSDSEHQTILKFFQGVTRYIGER >gi|333608863|gb|AFDH01000006.1| GENE 31 36480 - 37031 58 183 aa, chain - ## HITS:1 COG:no KEGG:BCA_A0209 NR:ns ## KEGG: BCA_A0209 # Name: not_defined # Def: hypothetical protein # Organism: B.cereus_03BB102 # Pathway: not_defined # 3 174 371 544 554 68 31.0 2e-10 MEFHNNHAIKYEGSIQNEEYQGYGILYNSNGSVRYRGDFGQGEKINGELFGKDGYYFIGI FSNGLPCTGDVKNLSNHFVQNFTGSIVNGKPHTGEGLVFNRDQDGYDRHQHEVQDEIDYF EEEQYYREQEEWQQEQINQSSREEYERWDEYIKAKWNNGNIKEYEDKEINKRVYIYTNSQ KKK >gi|333608863|gb|AFDH01000006.1| GENE 32 37020 - 37163 65 47 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKFHRNSIAYMISDKLAIEVVWNFMINLGSFIHNPVLFYIFFILNLI >gi|333608863|gb|AFDH01000006.1| GENE 33 37414 - 37959 -63 181 aa, chain - ## HITS:1 COG:no KEGG:BCA_A0209 NR:ns ## KEGG: BCA_A0209 # Name: not_defined # Def: hypothetical protein # Organism: B.cereus_03BB102 # Pathway: not_defined # 11 160 61 213 554 130 41.0 3e-29 MSFSPETYPKLSDTINYLIAGYSIIVTGIFSYVVWQTSIRSYQVAESVKKLEENRDKETV RQSALIIYYELLSAFSNLRDLYISRIIENKNPNPSQLFFSQEWVKNIAALRDKLSPLEIT EVHKLYSRFHTLKFFLESESERANLDAYIIETAEKVFASFFSRRNAQKRFWKYHDISKQK I >gi|333608863|gb|AFDH01000006.1| GENE 34 38221 - 38946 -104 241 aa, chain - ## HITS:1 COG:no KEGG:Fjoh_3534 NR:ns ## KEGG: Fjoh_3534 # Name: not_defined # Def: hypothetical protein # Organism: F.johnsoniae # Pathway: not_defined # 16 241 1 236 239 166 40.0 6e-40 MSISHRLTNYLSSQPMEDSEIQKRTMNLGKALVKELNLDPGVDTTARWMAHYIAEQIEIA EHSSGIQKQEAEERCFETILKLWNHRSAFPRGSRPFENFEPILRTLARLDPENDRHFFFE NRRDTTDNVPEEIQKWLDVAGGIDEAARVWLKYVFEQAALAATDDSSIEWLENSVALQEE DNFLVIFRELHSDIDDNWGEGQKENERKRKIIVSRIKKLEAFAELNQLLLTEYRNELVKS E >gi|333608863|gb|AFDH01000006.1| GENE 35 40363 - 40512 56 49 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MHQQYPFPSNQLKHQFHPCIELLRVYEHSERHTSVLKISENLKQTKQNL >gi|333608863|gb|AFDH01000006.1| GENE 36 43883 - 44017 162 44 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MYTLGSTKGNYFSTFDYTFTEKFVSKAIIIELHRGHFSIIGCIY >gi|333608863|gb|AFDH01000006.1| GENE 37 45242 - 45772 -64 176 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLKKKYDRLNEGLCLIRKGSMNAVAKRNDFDYMYLNKGQFEIRLLEKSLHAVHDMVGCAS IDVAFSNTTDFPITIMAGELFIYDKQGAKITNHPVFGLNEYVGADFKLPLQPKSEVVGHL FVGFSSSQPLKLNIDEHGLCDEKYDFNYYLWMRGIKNILPQYANVECLLMAIFYGK >gi|333608863|gb|AFDH01000006.1| GENE 38 45842 - 46120 159 92 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|229124034|ref|ZP_04253226.1| ## NR: gi|229124034|ref|ZP_04253226.1| hypothetical protein bcere0016_43190 [Bacillus cereus 95/8201] hypothetical protein bcere0016_43190 [Bacillus cereus 95/8201] # 1 91 1 92 396 85 52.0 1e-15 MDRINELVEYGYECDYLDFKEKQYSKEKTADLIVDIMAMANSRYDGDKFIIVGVKDRPEG KEIKGINPEEFIDSSNYKQVILNNIEPEIHFD Prediction of potential genes in microbial genomes Time: Sun Jul 17 07:30:58 2011 Seq name: gi|333608847|gb|AFDH01000007.1| Paenibacillus sp. HGF7 contig00022, whole genome shotgun sequence Length of sequence - 10188 bp Number of predicted genes - 12, with homology - 9 Number of transcription units - 10, operones - 2 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 397 125 ## + Term 413 - 457 -0.6 + Prom 531 - 590 4.1 2 2 Tu 1 . + CDS 745 - 1908 1197 ## COG1413 FOG: HEAT repeat + Term 1983 - 2047 2.1 - Term 1972 - 2031 5.1 3 3 Tu 1 . - CDS 2043 - 3302 1204 ## COG0501 Zn-dependent protease with chaperone function 4 4 Tu 1 . - CDS 3405 - 3722 206 ## COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold 5 5 Tu 1 . - CDS 3855 - 4376 446 ## COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold - Prom 4442 - 4501 2.6 6 6 Tu 1 . - CDS 4679 - 5686 651 ## COG0673 Predicted dehydrogenases and related proteins - Prom 5720 - 5779 2.1 + Prom 5749 - 5808 1.5 7 7 Op 1 . + CDS 5839 - 6465 626 ## COG3647 Predicted membrane protein 8 7 Op 2 . + CDS 6513 - 6824 503 ## BpOF4_18550 hypothetical protein + Term 6844 - 6875 1.5 + Prom 6900 - 6959 2.5 9 8 Op 1 . + CDS 6980 - 7204 271 ## 10 8 Op 2 . + CDS 7239 - 7787 413 ## PPSC2_c1500 coat f domain-containing protein + Term 7840 - 7876 6.3 + Prom 7935 - 7994 6.0 11 9 Tu 1 . + CDS 8145 - 8453 160 ## + Term 8484 - 8527 3.9 - Term 8532 - 8577 8.0 12 10 Tu 1 . - CDS 8687 - 10186 1548 ## COG0422 Thiamine biosynthesis protein ThiC Predicted protein(s) >gi|333608847|gb|AFDH01000007.1| GENE 1 2 - 397 125 131 aa, chain + ## HITS:0 COG:no KEGG:no NR:no SGRDDFAGARGGSVGRGPRSESARDSGRGTRDSGRGDRDSAAGPFGEAGWGVSAKQREEA EARSSRGRGGADSRGSRGGGSGRGDFGGSRSGGSAGRGSRSGGSNGRGAGPRGGGSRSGG PAPRGGSKRGR >gi|333608847|gb|AFDH01000007.1| GENE 2 745 - 1908 1197 387 aa, chain + ## HITS:1 COG:BH1718_2 KEGG:ns NR:ns ## COG: BH1718_2 COG1413 # Protein_GI_number: 15614281 # Func_class: C Energy production and conversion # Function: FOG: HEAT repeat # Organism: Bacillus halodurans # 230 375 1 146 155 176 65.0 8e-44 MNLVSIEPTPSPNTMKLNLDKALPKGRSLTFTRKQRDNAPGYIQQLLDIPGVTSVFQVAD FIALDRSPKGDWKQILTQARELLGSGGSQASLPGEDEAGSGFGEVKVLLQTFRGIPMQIR VNAGGEEARAALPERFTQAAMKATENSPHLLKERKLQELDVRYGELQDVLNEVVQEVDAS YDDKRLSLLTEQAAQGLSETDYAEAQRPAELTEEEIGRLLDDPDWKKRYAALQSVKATPQ TLPLLAKALGDEKTSVRRLATVYLGDIKEPEVLPYLFQALEDRTPAVRRTAGDTLSDLGD PAAVPAMSTALKDPNKLVRWRAARFLYEVGDDSCLEALREAAHDPEFEISMQVQMAIARI EGGHAAEGSVWQQMTRSRQGIDAPKQD >gi|333608847|gb|AFDH01000007.1| GENE 3 2043 - 3302 1204 419 aa, chain - ## HITS:1 COG:BS_yhfN KEGG:ns NR:ns ## COG: BS_yhfN COG0501 # Protein_GI_number: 16078093 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Zn-dependent protease with chaperone function # Organism: Bacillus subtilis # 1 409 1 411 426 291 41.0 1e-78 MKNWRVVLILGFAVYAAAVGFYFGRGDIYSLPSGSAGTSIDPHTFMSEGEIGRAEVLSRI RSIVYFLQTPLQLVLLILLVGTAIRFRDRIEGWTRRYLLRTGLFVFLFLLVVYVLMLPFD YFMLSVERHYGVSNVSLGTWLVDHAKNLGIEWLTTTFVLLLVLALMKRSPRKWWLWLWAF SVPLLLFLQFIQPVIIEPLYNEFTPLRAGELKKELLHLASQAGIAADDVYEVNMSERTNQ LNAYVSGIGSNARVVLWDTLLQKMDTREILVVMAHEMGHYAERHVFWGSGLGLVMSFGLL WGGSRIYEIAVRNWGRARGLRGPRDMAGLPLLLAIVSLLSLAVTPIDNAASRLMEVRADS YAMKMTGDGQAGVSAFQKLAAANLSPVTQPALLQWFLGSHPTIEERIRYFGEFAAQKAR >gi|333608847|gb|AFDH01000007.1| GENE 4 3405 - 3722 206 105 aa, chain - ## HITS:1 COG:BH3116 KEGG:ns NR:ns ## COG: BH3116 COG2220 # Protein_GI_number: 15615678 # Func_class: R General function prediction only # Function: Predicted Zn-dependent hydrolases of the beta-lactamase fold # Organism: Bacillus halodurans # 2 91 213 302 305 103 51.0 1e-22 MIGERFRIGCALMPIGAYEPEWFMSTQHVSPEEAVQAFLDTQADIFVPMHYGSFRLADDT PQEALDRLRLNWEQRKLDPQRLKVLLHGQTLKTTLSGAVNKFPAE >gi|333608847|gb|AFDH01000007.1| GENE 5 3855 - 4376 446 173 aa, chain - ## HITS:1 COG:BH3116 KEGG:ns NR:ns ## COG: BH3116 COG2220 # Protein_GI_number: 15615678 # Func_class: R General function prediction only # Function: Predicted Zn-dependent hydrolases of the beta-lactamase fold # Organism: Bacillus halodurans # 4 173 3 172 305 168 46.0 5e-42 MNRKRYTNMDPAAGLSTFSDLRKWRKERSGKVKDLSFVVKTSPDKDPGYLKANRSETTIT WIGHSTFLLQKNGINLVTDPVWASRMGFDKRLAEPGLKLGELPPVDAVLLSHGHYDHLHI GSLRALPGKPKLLVPEGLGKTLRRKGFDDIQELSWWGSHELGGLRLHFVPAQH >gi|333608847|gb|AFDH01000007.1| GENE 6 4679 - 5686 651 335 aa, chain - ## HITS:1 COG:BH3843 KEGG:ns NR:ns ## COG: BH3843 COG0673 # Protein_GI_number: 15616405 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Bacillus halodurans # 8 330 5 329 334 266 42.0 6e-71 MSSSNRKIRWGILGCASIALRATVPAIQASSTGELAAIASRDVFKAREAARRHGIPAAYG SYEELLADPTLDAVYIPLPNHLHFEWTIKAARAGKHVLCEKPLALTAAQAQEMAAACREE GVLLAEAFMYRHHPRYDRIREILAAGELGVIRAMRASFTFDNSADTGNVRCRKEWGGGSL YDIGCYTLNAARYLLDGEPEAVTVQAFFSPGHGGVDMMASGLAEFPDGVALTFDCGMWAA SRNTIEIVGTTGTIEVPSAFVAPEGRGADFTVTVNGARRTEAAPSVNQYAVQFDDFGRAV LGREPYRFPAEDAINGMKVLEACLLSAETRAKISL >gi|333608847|gb|AFDH01000007.1| GENE 7 5839 - 6465 626 208 aa, chain + ## HITS:1 COG:yjdF KEGG:ns NR:ns ## COG: yjdF COG3647 # Protein_GI_number: 16131947 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 17 203 16 202 209 173 48.0 2e-43 MKSSRVPTGSYSALLGSLAAVFIWSGIRPHDYFTWLLEVTPGLILVAVLIGIYRQTPLTL LTYTLVWAHVMILFVGGHYTYAEVPLFNWLRDTFDLERNYYDRLGHFMQGFVPAILTREI LIRKVPIQPGGWLTFLTLSVCLGFSAFYELLEFTVAKLTGTAAESFLGTQGDVWDTQWDM MCALIGAVLSLLLLGKSHNRAMRLPGSF >gi|333608847|gb|AFDH01000007.1| GENE 8 6513 - 6824 503 103 aa, chain + ## HITS:1 COG:no KEGG:BpOF4_18550 NR:ns ## KEGG: BpOF4_18550 # Name: not_defined # Def: hypothetical protein # Organism: B.pseudofirmus # Pathway: not_defined # 3 103 1 101 101 131 66.0 7e-30 MNMNQQEMEKRIIENYQRDERMMILIFAQWCINHGLDPAALYAQAYPQQGNNTELQQALE LTVSKEEAGEIPDDTLLGVLSMFGNEELAFVVTEEIAKRPPRK >gi|333608847|gb|AFDH01000007.1| GENE 9 6980 - 7204 271 74 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MQPITSKELDYLADSLTNEDLLIKQAANAIAHAQNPAIRQIAEHLIQSHQQHYAQILSAL QQHAQHAPNQPQQQ >gi|333608847|gb|AFDH01000007.1| GENE 10 7239 - 7787 413 182 aa, chain + ## HITS:1 COG:no KEGG:PPSC2_c1500 NR:ns ## KEGG: PPSC2_c1500 # Name: not_defined # Def: coat f domain-containing protein # Organism: P.polymyxa_SC2 # Pathway: not_defined # 59 178 8 122 128 85 52.0 1e-15 MNQQQNNQNRQLSYQQQQQHNQRQQQLEQLFQQQSAYPYSQGFQQNQQPNQQQNRQSGSI LSDKDLLSAILADHKRVVREYATATTESNCPAIRQLFNQLTLDTLHLQGELYTFMKQNNM YTTPSPALRQDIDKQIQHSQQSGQQTQQLVNPYLSSGGQHQGYSYTQPPYNQAGQAQQHY TM >gi|333608847|gb|AFDH01000007.1| GENE 11 8145 - 8453 160 102 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTALWGTLTLLIFGFLVVTVFIKSIQGARDQYGVSSFDYEEEEHTSAAHHEWMAEPGPDS ASVKEWATAEVDSARTDGIHSRQPVQLRAASEAASEEKQPNG >gi|333608847|gb|AFDH01000007.1| GENE 12 8687 - 10186 1548 499 aa, chain - ## HITS:1 COG:BH1933 KEGG:ns NR:ns ## COG: BH1933 COG0422 # Protein_GI_number: 15614496 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine biosynthesis protein ThiC # Organism: Bacillus halodurans # 1 499 95 595 595 895 83.0 0 YEGRTVKPEDNGLRSEEALANTEVFPGLNRKPLRAKPGSNVTQMHYARKGIVTPEMEYIA IRENVAPEFVRDEVARGRAVIPSNINHPESEPMIIGRNFLVKVNANIGNSAVASSIEEEV EKMTWATRWGADTVMDLSTGKNIHTTREWIVRNSPVPIGTVPIYQALEKVGGKAEELTWE IYRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRTTGIVSRGGSIMAAWCLAHHKENFLY THFEDICEIMKAYDISFSLGDGLRPGSIADANDEAQFAELDTLGELTRIAWKHDVQVIIE GPGHVPMHLIKENVDRQMEVCQEAPFYTLGPLTTDIAPGYDHITSAIGAAMIGSFGTAML CYVTPKEHLGLPNKNDVREGVIAYKIAAHAADLAKGHPGAQDRDNALSKARFEFRWRDQF NLSLDPERAMEYHDETLPAEGAKTAHFCSMCGPKFCSMRITQDIREYARENGLGEQEAAE AGMADKAAEFRREGNVIYK Prediction of potential genes in microbial genomes Time: Sun Jul 17 07:31:41 2011 Seq name: gi|333608817|gb|AFDH01000008.1| Paenibacillus sp. HGF7 contig00195, whole genome shotgun sequence Length of sequence - 22981 bp Number of predicted genes - 28, with homology - 25 Number of transcription units - 19, operones - 5 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 997 1086 ## COG0709 Selenophosphate synthase - Prom 1034 - 1093 3.3 + Prom 1019 - 1078 4.2 2 2 Op 1 . + CDS 1188 - 1847 605 ## COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase 3 2 Op 2 . + CDS 1835 - 2620 853 ## COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I - Term 2852 - 2894 7.1 4 3 Tu 1 1/0.250 - CDS 2936 - 3574 567 ## COG2345 Predicted transcriptional regulator - Prom 3600 - 3659 6.1 5 4 Op 1 . - CDS 3686 - 4117 572 ## COG2445 Uncharacterized conserved protein 6 4 Op 2 . - CDS 4123 - 4284 95 ## - Prom 4330 - 4389 2.7 7 5 Tu 1 . - CDS 4420 - 5085 630 ## PPE_01820 hypothetical protein - Prom 5235 - 5294 4.1 + Prom 5197 - 5256 6.5 8 6 Tu 1 . + CDS 5291 - 5584 308 ## + Term 5632 - 5678 10.5 - Term 5774 - 5809 6.7 9 7 Op 1 . - CDS 5951 - 6319 399 ## PPSC2_c4222 protein 10 7 Op 2 . - CDS 6381 - 6884 412 ## BBR47_49510 hypothetical protein 11 7 Op 3 . - CDS 6950 - 7288 409 ## - Prom 7506 - 7565 77.2 + TRNA 7489 - 7561 77.0 # Ala GGC 0 0 + Prom 7838 - 7897 3.3 12 8 Tu 1 . + CDS 7920 - 8639 260 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) + Term 8774 - 8801 0.1 - Term 8755 - 8795 7.2 13 9 Op 1 . - CDS 8825 - 9136 267 ## CbC4_0371 hypothetical protein - Prom 9168 - 9227 2.1 - Term 9173 - 9211 2.1 14 9 Op 2 . - CDS 9315 - 10316 572 ## COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family - Prom 10341 - 10400 3.3 + Prom 10377 - 10436 5.6 15 10 Tu 1 . + CDS 10464 - 10898 417 ## COG1522 Transcriptional regulators + Prom 10949 - 11008 10.0 16 11 Tu 1 . + CDS 11207 - 11869 568 ## Pjdr2_0255 fibronectin-binding family protein + Term 11957 - 11987 3.3 + Prom 12071 - 12130 4.3 17 12 Tu 1 . + CDS 12156 - 14108 912 ## COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component - Term 13930 - 13963 0.2 18 13 Tu 1 . - CDS 14202 - 14537 370 ## PPSC2_c2461 hypothetical protein - Prom 14588 - 14647 7.6 + Prom 14644 - 14703 6.1 19 14 Tu 1 . + CDS 14730 - 15182 607 ## COG2707 Predicted membrane protein + Term 15212 - 15264 15.2 - Term 15207 - 15242 3.2 20 15 Tu 1 . - CDS 15281 - 15928 823 ## COG1182 Acyl carrier protein phosphodiesterase - Prom 15996 - 16055 7.9 - Term 16062 - 16092 4.1 21 16 Tu 1 . - CDS 16114 - 16707 510 ## Aflv_1391 hypothetical protein - Term 16835 - 16874 8.1 22 17 Tu 1 . - CDS 16895 - 17377 521 ## COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains - Prom 17399 - 17458 2.5 + Prom 17385 - 17444 3.7 23 18 Tu 1 . + CDS 17489 - 17719 304 ## PPE_03933 small, acid-soluble spore protein 1 (SASP) + Term 17747 - 17802 15.5 24 19 Op 1 1/0.250 - CDS 17792 - 18370 552 ## COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) 25 19 Op 2 2/0.000 - CDS 18370 - 18963 496 ## COG0237 Dephospho-CoA kinase 26 19 Op 3 2/0.000 - CDS 19008 - 19775 824 ## COG1971 Predicted membrane protein 27 19 Op 4 4/0.000 - CDS 19839 - 20699 752 ## COG0266 Formamidopyrimidine-DNA glycosylase 28 19 Op 5 . - CDS 20740 - 22977 2575 ## COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains Predicted protein(s) >gi|333608817|gb|AFDH01000008.1| GENE 1 1 - 997 1086 332 aa, chain - ## HITS:1 COG:PM0790 KEGG:ns NR:ns ## COG: PM0790 COG0709 # Protein_GI_number: 15602655 # Func_class: E Amino acid transport and metabolism # Function: Selenophosphate synthase # Organism: Pasteurella multocida # 4 322 21 336 366 266 45.0 5e-71 MKEAQPVKLTSLSSKGGCGCKIGPADLSQVLRGMPAPLPNPNLLVGLDTSDDAGVYKLSD DLALVQTVDFFTPIVDDPYSFGQVAAANAISDIYAMGGKPLTVLNIVAFPIKTLDKQVLT DILRGAADKVQEAGATLVGGHSIDDNEPKFGLAVTGLIHPDRVRTNAGAKPGDKLILTKP IGVGILTTSIKKDQLSEEEVQRVTSVMATLNKTAAEVMDGFEVHACTDVTGFGLLGHASE VAKGSGVGVRIGANDVPFLPRVRELAEAGFVPGGTKNNFAHVQDTVDFDPSIDQIGQWML CDAVTSGGLLISAAAADADELLARLLAAGVEA >gi|333608817|gb|AFDH01000008.1| GENE 2 1188 - 1847 605 219 aa, chain + ## HITS:1 COG:RSc2752 KEGG:ns NR:ns ## COG: RSc2752 COG0800 # Protein_GI_number: 17547471 # Func_class: G Carbohydrate transport and metabolism # Function: 2-keto-3-deoxy-6-phosphogluconate aldolase # Organism: Ralstonia solanacearum # 15 208 11 201 213 134 44.0 2e-31 MEREQGLQELERTRLIAILRGVKPGQIIRTAEAMLEGGVTVLEVTLNTDGALDMIRELRS RLGGRMFIGAGTVLDLEDARQATEAGASFLVTPNTDEAVIAYSVSQGIPIFPGAMTPTEI VRAWKAGAQAVKVFPSTGLGLTYIRELMGPLDRVPMVAVGGVTAGNIGEYLQAGCYAAGV GSSLCKLADIDAGRFDVITANARRFTGAVSEWREAAWTS >gi|333608817|gb|AFDH01000008.1| GENE 3 1835 - 2620 853 261 aa, chain + ## HITS:1 COG:BB0533 KEGG:ns NR:ns ## COG: BB0533 COG1235 # Protein_GI_number: 15594878 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily I # Organism: Borrelia burgdorferi # 3 254 2 251 253 95 31.0 1e-19 MDVLTFFGTGDSMGVPRAYCDCGVCTEARTTGVNRRLRSSALLDTGTAEGSLLLDCGPNW GLQMERAGLRDLRHVLITHAHYDHIGGLPEYADLCRWLGIRGKVYAAAEVVDRIRAIFPW IDRNLDYIAVDEGFSFGGWEIRPWKVTHGANGFSFALRFDRKEDYSFVYCPDSIGLDERE KAPMRDVDLLVLGTSFYKEEGAGRSVYDVTEALELLREVKPSRTVFTHLSHGIDLLEDYA LPSGVRFAQAGLSIALSRDSG >gi|333608817|gb|AFDH01000008.1| GENE 4 2936 - 3574 567 212 aa, chain - ## HITS:1 COG:BH3429 KEGG:ns NR:ns ## COG: BH3429 COG2345 # Protein_GI_number: 15615991 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Bacillus halodurans # 8 208 8 210 215 173 46.0 2e-43 MYRDAELSTRKIVLSLLRTRGPLSVGELAKELGITEMAVRRHLNTLDRDGFIESKLARQA MGRPLHMYSLTKEADDLFPKKYNALTLDLLEELVAEEGEGKLTRLFQRRKDKLSERYGSR MEGKSFPEKVAELARIQNDNGYMVSLEQGENGDYILNEHNCPIAQVADQYQQACQCELAL FQELLGTPVERTECLAKGGTKCVYQIRRAESF >gi|333608817|gb|AFDH01000008.1| GENE 5 3686 - 4117 572 143 aa, chain - ## HITS:1 COG:BS_yutE KEGG:ns NR:ns ## COG: BS_yutE COG2445 # Protein_GI_number: 16080283 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 1 142 1 137 144 78 35.0 4e-15 MYYVNVDQIKQRLAFVPELLTGCSELEQAFSNGDKRLITYLAQERVLHLAIETVTDVGSL IIDGFLMRDASSYEDIIDILGTEKVFSEETTAALLSLVKLRRPLVQEYDTFSREGVHPLL KELPAILPDFTRSVEAFIEKEMI >gi|333608817|gb|AFDH01000008.1| GENE 6 4123 - 4284 95 53 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MDLMYIAAAAGDSGKSKLSMEYLMQSVLLVIIVVIMFVIMLVWSKWSKKRRRK >gi|333608817|gb|AFDH01000008.1| GENE 7 4420 - 5085 630 221 aa, chain - ## HITS:1 COG:no KEGG:PPE_01820 NR:ns ## KEGG: PPE_01820 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 1 221 1 221 225 184 42.0 3e-45 MLGKFFLFSLLLYITRSPLLALIILLVLLYVIDRRFIGLSPSLLRPLKRNRRISQLRQEL RANPHHASSKLELARLLIDKRKYREALVYLREVEPVMSESADVSYEIGLCLLKTDQLQEG LAYMTKALELNPRVKYGDPYLQMGEALAESEPRQAVDMLERFRDEQSSSVEAYYRLGLLY RKLGRTEQAKEAFRESVDVYKSLPKYSRRKQRRWAILARFK >gi|333608817|gb|AFDH01000008.1| GENE 8 5291 - 5584 308 97 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNEQQARKWSVMRRKGPGMYVMLNFALPVGLVLTALVSLLEYSLTGELIGIWLPIRLIVF CFIGFFIGMFRWQTVDKRYQQVAPKYGLPVQVEKGTK >gi|333608817|gb|AFDH01000008.1| GENE 9 5951 - 6319 399 122 aa, chain - ## HITS:1 COG:no KEGG:PPSC2_c4222 NR:ns ## KEGG: PPSC2_c4222 # Name: not_defined # Def: protein # Organism: P.polymyxa_SC2 # Pathway: not_defined # 4 117 3 113 119 61 33.0 9e-09 MDTYIKHAKVTRITNHKDAQVADVEFAVEGFDKPLLAKFEKPHGALSSGSAGEASFKLGP VYRNDADLALDWYNNNLHDAYEDITAELLSSSTNIYELQKDQLEARLLEHGDVKRELEEG TF >gi|333608817|gb|AFDH01000008.1| GENE 10 6381 - 6884 412 167 aa, chain - ## HITS:1 COG:no KEGG:BBR47_49510 NR:ns ## KEGG: BBR47_49510 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 26 154 24 153 167 82 38.0 9e-15 MKPRLRTYGWWLAATLVWMIFIFAKSAETYQEQDMRPFFRELVQEDVLRQWIPQVEFTYD GGLVTYKKPYDFAEFIIRKAGHVSEFALLAFLWIRTLLAMKRPFWTAWLAGGFLAVLYAA SDEWHQSFVPGRTGHAIDVGMDSVGVLLVMVVFAGIRLIRGGNVRSR >gi|333608817|gb|AFDH01000008.1| GENE 11 6950 - 7288 409 112 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSNNTLYWVFTILVFGITLVMGIVLMRRTRKLWLSFGISTLFNTVMTVLVCLWWARITDD AYSVLFHNAFFLLGYFNVIIIDFFALVSIQRKTSGEGAKKRKKTYEEEYGDT >gi|333608817|gb|AFDH01000008.1| GENE 12 7920 - 8639 260 239 aa, chain + ## HITS:1 COG:SMb20750 KEGG:ns NR:ns ## COG: SMb20750 COG1028 # Protein_GI_number: 16265190 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Sinorhizobium meliloti # 2 208 7 211 249 78 28.0 1e-14 MRSYLIFGASKGLGDAFVKGLPEHGDQVWIVSRSRPGSLDLNDGIKRIWIAADLAQPDAA QVISKGIQTEKIDVLVYNVGIWEKEGFEVQYTFDKDEASDIANIINVNITSTITCIQAAL PNLRKSEAGKIILIGSTAGLDHTNNNQVSFVASKFGLRGITHALREHVRKDGIAVTCVNP GELAAEIPYEDGADKAIAEYSGTRIPVQDIVSIVKCVVNLSRVSCVKEIHIPAMTDLNA >gi|333608817|gb|AFDH01000008.1| GENE 13 8825 - 9136 267 103 aa, chain - ## HITS:1 COG:no KEGG:CbC4_0371 NR:ns ## KEGG: CbC4_0371 # Name: not_defined # Def: hypothetical protein # Organism: C.botulinum_BKT015925 # Pathway: not_defined # 6 101 202 297 297 76 44.0 3e-13 MNEPTLKKAMDTLEFLSQDREARRLYEERQKYLHDEASMIEWATEKGMAKGMAQGIAKGI AEGEQKKAIQIAKNMLALGLQVSVIAQASGLSEAEVESLKSVQ >gi|333608817|gb|AFDH01000008.1| GENE 14 9315 - 10316 572 333 aa, chain - ## HITS:1 COG:BS_yqjM KEGG:ns NR:ns ## COG: BS_yqjM COG1902 # Protein_GI_number: 16079439 # Func_class: C Energy production and conversion # Function: NADH:flavin oxidoreductases, Old Yellow Enzyme family # Organism: Bacillus subtilis # 1 319 1 317 338 253 44.0 3e-67 MTRTLNDPITIGGITLKNRLIMAPLQQYKGTPEAFAAGHHIEHYGRRAKHVGLIILESTA VSSNGRLWANDIGIYTDRHVEALRKVTDAVHAHDTPVFIQLSHGGRKSSPEVTATLVAPS AIAFDDQYGMPQELSAEGIHNIIREYRMAARRSVEAGFDGIELHAAHGFLIHQFLSPLSN VRTDAYGGSSENRARFLKEVLSAVRGEVGRDYPVIVRISATDYSEGGLIPEEWARMLKPL ESELDAIHVSSGGILPVQPSDVYTAYQLPHAAAIKQHFEIPVIAVGKIYTRSLADRILED GLADVIAIGRPLLEDPDYAEGLLMVRETAGNAG >gi|333608817|gb|AFDH01000008.1| GENE 15 10464 - 10898 417 144 aa, chain + ## HITS:1 COG:BH0212 KEGG:ns NR:ns ## COG: BH0212 COG1522 # Protein_GI_number: 15612775 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus halodurans # 1 131 1 134 146 99 38.0 1e-21 MDRIDSKILSLMHENARIPISEMSRMIAMSQPAVTERLRKLEERGVITGYRAKLSPPKLG KQTTAFVLFKTTDCKGFAAFSEKSPEIVDLYRISGEYNFLMKVLSATTESLTGFLDECNA FGFSTTLIVLSTAFEDKSLVKSDL >gi|333608817|gb|AFDH01000008.1| GENE 16 11207 - 11869 568 220 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_0255 NR:ns ## KEGG: Pjdr2_0255 # Name: not_defined # Def: fibronectin-binding family protein # Organism: Paenibacillus # Pathway: not_defined # 1 215 1 216 217 274 62.0 1e-72 MIQPFIRNHQYNVIKKQSLLLQKTYETVSDPKVVESVKSSAPFKLLEAFPEADDLQKPLL EKISGLRTAEESKHYPESLESYLAPFPALTGKQLAKLFPKNKKLKIPDLSEIDYRYVTYL GWTDIAANKLFLVYPLNGKLIGIEGRYTPANKGVCFLCNKHEEVALFTAVTKSRPAKASS DYYKAIGNYLCVDSIVCNRNITNVTTLDKFVREVVGYTES >gi|333608817|gb|AFDH01000008.1| GENE 17 12156 - 14108 912 650 aa, chain + ## HITS:1 COG:BS_yxeB KEGG:ns NR:ns ## COG: BS_yxeB COG0614 # Protein_GI_number: 16081012 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-hydroxamate transport system, periplasmic component # Organism: Bacillus subtilis # 373 649 38 318 319 157 36.0 9e-38 MKFNEQVAIWNQTAVKIFDIRHTVMNPGERLEDYRLPASAYIYGTRGAANLQLDGVVHRT RQYYLLHGAKGMNLEIEAKEEFEFYLLFYKAKLAFTNWRKLRDWLEQRSPFEIQYGFEPD EPRTLFILMSSMKRTLKSSGSLGNLQIKGMFYQFVHEVMQHRIAAESDSGQKDLVSMVTQ YLHTHYHEVISLDLLARQYKYSPRYLSMKFKQQTGTSPIEYLIQYRINEARKLLSETDET LGVIAEHVGYSDEYYFSRLFKKYTGLSPSRYQAQARARENLAPQDNPSAISRSSIGLLNL RRYSDNDNHYHYSDGGFLTMKRIKKSSLILGTLISLTLLLSACSGGVNPASNSSASTTNV SASPSPYPDKISTETRIVSTVKGDVVVPAEPKRVVVLYMLGDVVALGVNPVGISEIYDGA AFSEQLKGVQSLGHWDEANPEAVLSLEPDLIIVSSENSYKKLKDIAPTVFIPADQITTEA RIQKLGEIFGKKKEADQFMEAFNDKVKASREKLQAAGILDKTVSIVEGERKGMMVIESKH YGRGSQIVYDYLGMKAPEIIQKKIDLAKDVESETVSLEVIPQYIGDFVLRSTWEGMDNLM DHPVWNRIPAVKAGRIIEAPFGLFYYTDLYSLSAQLDYVTNSLLNNASKF >gi|333608817|gb|AFDH01000008.1| GENE 18 14202 - 14537 370 111 aa, chain - ## HITS:1 COG:no KEGG:PPSC2_c2461 NR:ns ## KEGG: PPSC2_c2461 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa_SC2 # Pathway: not_defined # 1 110 1 110 111 73 43.0 2e-12 METIEMIAVGALILALLLLIKVFSLQSRVNAIQSDLEWLKGRAEGQMINRLKPSTAARSD KPASEQRPLLDERVHHLLAQGEKIKAIKIVRAAHGIGLKEAKDYVENLERG >gi|333608817|gb|AFDH01000008.1| GENE 19 14730 - 15182 607 150 aa, chain + ## HITS:1 COG:yeaL KEGG:ns NR:ns ## COG: yeaL COG2707 # Protein_GI_number: 16129743 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 19 149 17 147 148 127 61.0 9e-30 MVQVDMPSILLLGLALLGLLSSNSTVTIAMLVLLLLRVMNVHQAFPFLEKYGLTIGVVIL TIGVMTPIASGKMPVQTIFQSFMHWKSLLAVLIGITVAYLGGRGALLMTNQPNVVAGLLI GTVLGVALFRGVPVGPLIAAGLLSLLIGKG >gi|333608817|gb|AFDH01000008.1| GENE 20 15281 - 15928 823 215 aa, chain - ## HITS:1 COG:SA0204 KEGG:ns NR:ns ## COG: SA0204 COG1182 # Protein_GI_number: 15925915 # Func_class: I Lipid transport and metabolism # Function: Acyl carrier protein phosphodiesterase # Organism: Staphylococcus aureus N315 # 1 208 1 208 208 230 51.0 2e-60 MNKLLYITANPRGVDRSFGLQVGEHFLEAVSKENPDLQVERVDVYEEHIPLIDADVLNGW DKLRAGEALNETEAAAINRMNEVLEQFLSADGYVFVTPMWNLSYPPMLKAYIDNIAIAGK TFRYTANGSEGLMTGKKVVHIQARGGIYSEGPAADFEFTDKYLRGIMAFIGITDYEHVYV EGIAAYPDKAEELVKGAKTRAAETAAQFAKTPSRV >gi|333608817|gb|AFDH01000008.1| GENE 21 16114 - 16707 510 197 aa, chain - ## HITS:1 COG:no KEGG:Aflv_1391 NR:ns ## KEGG: Aflv_1391 # Name: not_defined # Def: hypothetical protein # Organism: A.flavithermus # Pathway: not_defined # 132 197 3 68 68 84 54.0 3e-15 MSSTQGNGQGVPWGFGKPEVPDYTKVTQGQAQLPGSPFGGGVNQPPGNQGQPAGGLTGAF PPPGAYPGSFGSADGWSGQGGFPPGFQPGGGGFAPFPQGGFGSVGGGAEPGGYGALEAGF PYGGGGVPVAVPQPFFSIDPYVYLTLRTIVGRGVVVETVRGSNRGVLTDVKPDHVVVQED GKKFFIRTAQIIWVMPE >gi|333608817|gb|AFDH01000008.1| GENE 22 16895 - 17377 521 160 aa, chain - ## HITS:1 COG:BH3146 KEGG:ns NR:ns ## COG: BH3146 COG1327 # Protein_GI_number: 15615708 # Func_class: K Transcription # Function: Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains # Organism: Bacillus halodurans # 1 152 1 152 153 194 65.0 8e-50 MKCPFCEHNGTKVLDSRSANDNKSIRRRRECEKCQRRFTTFEMVEETPLIVIKKDGSREE FNRDKILRGLIRACEKRPVSVDRLEQIVSEVEMQVRNMAHAEVDSMRIGEIVMEQLYPVD EVAYIRFASVYRQFKDINMFLKELEQILGKTNLSALKPDG >gi|333608817|gb|AFDH01000008.1| GENE 23 17489 - 17719 304 76 aa, chain + ## HITS:1 COG:no KEGG:PPE_03933 NR:ns ## KEGG: PPE_03933 # Name: not_defined # Def: small, acid-soluble spore protein 1 (SASP) # Organism: P.polymyxa # Pathway: not_defined # 4 72 7 75 78 84 71.0 1e-15 MGAGQSRSSNVLVVPQANQALDQLKYEVAQELGIAIPQDGYYGNMATRDTGAIGGHITRR LVQIAEQQLAGQGQSR >gi|333608817|gb|AFDH01000008.1| GENE 24 17792 - 18370 552 192 aa, chain - ## HITS:1 COG:CAC1100 KEGG:ns NR:ns ## COG: CAC1100 COG0741 # Protein_GI_number: 15894385 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) # Organism: Clostridium acetobutylicum # 33 181 29 180 183 125 40.0 6e-29 MKLLRKKRVFALLLLGFVFLLFSNGLFIGQMIYPIHYREEIRQNAAQYQVDPFLIAAIIK VETNFNHDRESKKGAVGIMQLMPDTAEWIRETSNTKSADFRDPKHNIQLGSWYLAWLNKQ YKGNWLYSIAAYNAGQGNVSKWKNNGVWDGTEETIKKIPFGETRHYVQRVLYYQQKFKKL YGEEWNQSAGSK >gi|333608817|gb|AFDH01000008.1| GENE 25 18370 - 18963 496 197 aa, chain - ## HITS:1 COG:BS_ytaG KEGG:ns NR:ns ## COG: BS_ytaG COG0237 # Protein_GI_number: 16079958 # Func_class: H Coenzyme transport and metabolism # Function: Dephospho-CoA kinase # Organism: Bacillus subtilis # 3 189 5 190 197 164 48.0 1e-40 MNIGLTGGIACGKSTVSAMLVRRGAILIDADRIAREVVEPGSPVLAQVAAHFGQDMLLPD GSLHRKRLGETVFGNEEARKALEDLLHPSIRALMKERMAAAEREFPDKLVVVDVPLLYES GLQSMFSSVMVVYVPREVQLRRLMERDGLNAEQAEFRLAAQWPIERKKELADSCIDNSGT LEQTEQLVERFWLQRGL >gi|333608817|gb|AFDH01000008.1| GENE 26 19008 - 19775 824 255 aa, chain - ## HITS:1 COG:BH3151 KEGG:ns NR:ns ## COG: BH3151 COG1971 # Protein_GI_number: 15615713 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Bacillus halodurans # 1 254 1 211 213 160 43.0 2e-39 MLPFFSLLILALAVSLDGFGVGMMYGLRKIRIPLPSLAIISLCSGIIIYISMSFGVWLTR YLSPDYAGMLGAVILIGIGIWALVQFLAQKQGNDGDGDEKERTQTANASAVPAGTARLKA VFQTNPVAARRPEATRAEPEREPRMFSIEIKRLGLVIQILRTPSAADVDRSGNISSSEAT LLGIALSLDAFGAGIGAALIGYTPLLTSAVIAVTSGLFIYFGLKIGYTYSGFGWIRKVSV LPGVVLILMGISKLF >gi|333608817|gb|AFDH01000008.1| GENE 27 19839 - 20699 752 286 aa, chain - ## HITS:1 COG:BH3152 KEGG:ns NR:ns ## COG: BH3152 COG0266 # Protein_GI_number: 15615714 # Func_class: L Replication, recombination and repair # Function: Formamidopyrimidine-DNA glycosylase # Organism: Bacillus halodurans # 1 273 1 273 274 332 60.0 7e-91 MPELPEVETVRRTLSRLVVGKTIQEVEVRLKRIIQKPEEPELFADLLEGQTIQGVSRRGK FLRFLLDDGVLVSHLRMEGRYGLYEASDEVEPHTHVIFRFTDGTELRYRDVRQFGTMHLF AGEEDLSSKPLHKLGIEPLDESFTFEAFRQAIGKRSTKIKPLLLNQAYIVGLGNIYVDEA LFRAGIHPEREAASLTRLELQRLHEAIVHTLQSSVEAGGSSIKSYVNGQGESGNFQHSLN IYGRNGKPCVNCGSLIEKTVVGGRGTHFCLTCQPLKRKRSAPKNKL >gi|333608817|gb|AFDH01000008.1| GENE 28 20740 - 22977 2575 745 aa, chain - ## HITS:1 COG:BH3153_2 KEGG:ns NR:ns ## COG: BH3153_2 COG0749 # Protein_GI_number: 15615715 # Func_class: L Replication, recombination and repair # Function: DNA polymerase I - 3'-5' exonuclease and polymerase domains # Organism: Bacillus halodurans # 179 745 5 569 569 645 60.0 0 MTVALTRKGISEVDRYDPAEIQAKYGLVPAQIIDLKGLMGDSSDNIPGIPGVGEKTALKL LHEYGSVESVLEHADEMKGKMKEKVRDHADSARMSKEIATIYREVPMDTDWSSLAFSGFE TPELAAMFRKLEFKSLLERLDFSGAGGTDSPEGAEPGPAEELVVRLIDADNITDLTGALK DVSALHVEAVGDNAHTAELVGAAFHTPEAGYYVPAGVLTAPGAEALHAWLADERAPKSTW DRHRAELVLAWNGITLAGVAFDVMLAAYLLDPTESSLTLSGIADKYGALHVAPDEAVFGK GAKFRLPETEAVAEHLVRKADRISRLDVSLREKLEQADMKQLYYELELPLSGVLADMELR GIKVDTAGLRQLGDELAVQIERTMTEIYRHAGMEFNINSPKQLGEVLFEKLQLPVQKKTK TGYSTDAEVLEKLAPYHEIVQGILHYRQLAKLQSTYVEGLLKEVRKETGKVHTYYRQTIA ATGRLSSQYPNLQNIPIRLEEGRKIRKVFVPSEPGWSILAADYSQIELRVLAHISGDENL KEAFTNNMDIHTKTAMDVFGVAESEVDANMRRSAKAVNFGIVYGISDYGLSQNLAISRKE ASQFIEQYFAVFQGVRQYMDDIVKLAREQGYVTTLLQRRRYLPEITASNFNLRSFAERTA MNTPIQGTAADIIKLAMVQMDERLKAEGLKSRMLLQVHDELIFEVPPDELETMRRIVPEV MEGALALDVPLLAEVDYGSNWYEAK Prediction of potential genes in microbial genomes Time: Sun Jul 17 07:32:49 2011 Seq name: gi|333608724|gb|AFDH01000009.1| Paenibacillus sp. HGF7 contig00019, whole genome shotgun sequence Length of sequence - 89747 bp Number of predicted genes - 98, with homology - 53 Number of transcription units - 62, operones - 20 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 1099 1123 ## COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases - Prom 1181 - 1240 3.1 + Prom 1145 - 1204 6.4 2 2 Op 1 1/0.286 + CDS 1256 - 2044 649 ## COG0314 Molybdopterin converting factor, large subunit + Prom 2186 - 2245 1.9 3 2 Op 2 . + CDS 2267 - 3535 1149 ## COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 + Term 3552 - 3589 8.0 + Prom 3659 - 3718 6.3 4 3 Tu 1 . + CDS 3891 - 4952 918 ## COG2206 HD-GYP domain + Term 4986 - 5029 1.0 + Prom 4979 - 5038 2.1 5 4 Tu 1 . + CDS 5257 - 5580 193 ## - Term 5754 - 5789 5.2 6 5 Op 1 . - CDS 5877 - 6353 143 ## - Prom 6378 - 6437 1.9 - Term 6370 - 6416 12.1 7 5 Op 2 . - CDS 6441 - 7121 178 ## - Prom 7209 - 7268 6.5 - Term 7260 - 7312 1.9 8 6 Op 1 6/0.143 - CDS 7354 - 8751 1451 ## COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component 9 6 Op 2 19/0.000 - CDS 8779 - 9207 413 ## COG0822 NifU homolog involved in Fe-S cluster formation 10 6 Op 3 24/0.000 - CDS 9194 - 10420 923 ## COG0520 Selenocysteine lyase 11 6 Op 4 41/0.000 - CDS 10417 - 11712 1347 ## COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component 12 6 Op 5 . - CDS 11745 - 12581 171 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 - Prom 12620 - 12679 4.4 13 7 Tu 1 . - CDS 12937 - 13530 576 ## COG4293 Uncharacterized protein conserved in bacteria - Prom 13566 - 13625 4.3 - Term 13654 - 13692 8.0 14 8 Tu 1 . - CDS 13777 - 14226 540 ## COG0783 DNA-binding ferritin-like protein (oxidative damage protectant) - Prom 14252 - 14311 2.0 + Prom 14300 - 14359 5.2 15 9 Op 1 4/0.286 + CDS 14428 - 15654 1437 ## COG4857 Predicted kinase 16 9 Op 2 . + CDS 15654 - 16763 1448 ## COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family + Term 16968 - 17016 -0.2 17 10 Tu 1 . - CDS 17130 - 17831 760 ## COG1309 Transcriptional regulator - Prom 17958 - 18017 5.8 + Prom 17883 - 17942 4.9 18 11 Tu 1 . + CDS 17991 - 19691 1838 ## COG0477 Permeases of the major facilitator superfamily + Term 19694 - 19755 11.4 19 12 Tu 1 . - CDS 20016 - 20975 1195 ## COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) - Prom 21086 - 21145 5.4 + Prom 21004 - 21063 5.9 20 13 Op 1 . + CDS 21172 - 21381 72 ## Pjdr2_5308 transcriptional regulator, HxlR family 21 13 Op 2 . + CDS 21288 - 21536 76 ## COG1733 Predicted transcriptional regulators 22 13 Op 3 . + CDS 21622 - 22092 503 ## Bsph_2655 hypothetical protein + Term 22239 - 22270 4.1 - Term 22217 - 22265 11.8 23 14 Tu 1 . - CDS 22461 - 23456 1032 ## COG0673 Predicted dehydrogenases and related proteins - Prom 23660 - 23719 3.9 + Prom 23518 - 23577 5.3 24 15 Tu 1 . + CDS 23753 - 24373 675 ## COG3467 Predicted flavin-nucleotide-binding protein + Term 24418 - 24459 -0.0 - Term 24378 - 24416 -0.1 25 16 Tu 1 . - CDS 24450 - 24614 61 ## - Term 24700 - 24739 4.1 26 17 Op 1 25/0.000 - CDS 24833 - 26590 1855 ## COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) 27 17 Op 2 . - CDS 26590 - 26859 263 ## COG1925 Phosphotransferase system, HPr-related proteins - Prom 26994 - 27053 2.6 28 18 Op 1 1/0.286 - CDS 27126 - 27860 774 ## COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain 29 18 Op 2 2/0.286 - CDS 27880 - 28638 875 ## COG1402 Uncharacterized protein, putative amidase 30 18 Op 3 3/0.286 - CDS 28652 - 29644 1296 ## COG1735 Predicted metal-dependent hydrolase with the TIM-barrel fold 31 19 Op 1 11/0.143 - CDS 29745 - 31034 1556 ## COG3037 Uncharacterized protein conserved in bacteria 32 19 Op 2 13/0.000 - CDS 31061 - 31324 368 ## COG3414 Phosphotransferase system, galactitol-specific IIB component 33 19 Op 3 5/0.286 - CDS 31321 - 31764 579 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) 34 19 Op 4 . - CDS 31791 - 33887 2091 ## COG3711 Transcriptional antiterminator - Prom 33955 - 34014 3.5 35 20 Op 1 . - CDS 34207 - 35046 912 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 36 20 Op 2 1/0.286 - CDS 35141 - 35938 819 ## COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family 37 20 Op 3 . - CDS 36014 - 36550 564 ## COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins 38 20 Op 4 . - CDS 36557 - 36874 362 ## - Prom 36911 - 36970 5.0 - Term 37206 - 37250 10.0 39 21 Tu 1 . - CDS 37318 - 37806 454 ## COG2318 Uncharacterized protein conserved in bacteria - Prom 38053 - 38112 5.5 + Prom 37950 - 38009 4.9 40 22 Tu 1 . + CDS 38054 - 39031 918 ## COG4989 Predicted oxidoreductase + Term 39055 - 39083 -1.0 41 23 Tu 1 . - CDS 39173 - 39517 123 ## + Prom 39681 - 39740 4.9 42 24 Tu 1 . + CDS 39833 - 41509 1920 ## COG3979 Uncharacterized protein contain chitin-binding domain type 3 + Term 41540 - 41589 11.1 43 25 Op 1 . - CDS 41826 - 42026 228 ## 44 25 Op 2 . - CDS 42039 - 42263 202 ## - Prom 42335 - 42394 4.8 - Term 42385 - 42433 13.1 45 26 Op 1 . - CDS 42460 - 42597 102 ## 46 26 Op 2 . - CDS 42594 - 43955 678 ## GYMC10_4017 helix-turn-helix domain protein - Prom 44064 - 44123 5.8 + Prom 43970 - 44029 2.8 47 27 Tu 1 . + CDS 44104 - 44445 116 ## 48 28 Tu 1 . - CDS 44460 - 45572 323 ## COG0582 Integrase - Term 45592 - 45648 9.3 49 29 Op 1 . - CDS 45659 - 45841 135 ## - Prom 45868 - 45927 5.2 50 29 Op 2 . - CDS 45931 - 46416 273 ## COG3645 Uncharacterized phage-encoded protein - Term 46774 - 46833 8.2 51 30 Op 1 . - CDS 46850 - 47470 -336 ## COG3331 Penicillin-binding protein-related factor A, putative recombinase 52 30 Op 2 . - CDS 47475 - 48191 175 ## COG5632 N-acetylmuramoyl-L-alanine amidase - Prom 48304 - 48363 4.1 + Prom 48104 - 48163 2.9 53 31 Tu 1 . + CDS 48191 - 48295 75 ## - Term 48610 - 48646 -1.0 54 32 Tu 1 . - CDS 48680 - 48820 163 ## - Prom 48936 - 48995 6.7 55 33 Tu 1 . - CDS 49142 - 49615 -20 ## - Prom 49856 - 49915 3.3 56 34 Op 1 . - CDS 51062 - 51679 310 ## 57 34 Op 2 . - CDS 51684 - 52691 23 ## gi|225405435|ref|ZP_03760624.1| hypothetical protein CLOSTASPAR_04655 58 34 Op 3 . - CDS 52710 - 54056 117 ## 59 34 Op 4 . - CDS 54069 - 54869 -54 ## - Prom 54974 - 55033 3.9 60 35 Op 1 . - CDS 55259 - 56113 7 ## gi|225405434|ref|ZP_03760623.1| hypothetical protein CLOSTASPAR_04654 61 35 Op 2 . - CDS 56150 - 56368 87 ## - Prom 56529 - 56588 4.8 - Term 56481 - 56528 0.0 62 36 Tu 1 . - CDS 56698 - 56874 107 ## - Prom 57016 - 57075 6.9 - Term 57076 - 57111 2.0 63 37 Tu 1 . - CDS 57112 - 62694 1705 ## COG5283 Phage-related tail protein - Prom 62729 - 62788 3.8 64 38 Tu 1 . - CDS 63538 - 64053 221 ## - Prom 64074 - 64133 5.6 65 39 Op 1 . - CDS 64170 - 64904 361 ## 66 39 Op 2 . - CDS 64947 - 65666 150 ## BATR1942_07965 hypothetical protein 67 39 Op 3 . - CDS 65667 - 66155 212 ## 68 39 Op 4 . - CDS 66173 - 66790 254 ## 69 39 Op 5 . - CDS 66795 - 67226 213 ## 70 39 Op 6 . - CDS 67239 - 67736 253 ## 71 39 Op 7 . - CDS 67788 - 68027 140 ## - Prom 68187 - 68246 3.1 72 40 Tu 1 . - CDS 68360 - 68536 131 ## - Prom 68774 - 68833 5.6 73 41 Tu 1 . - CDS 68850 - 68915 63 ## 74 42 Tu 1 . - CDS 69297 - 69719 397 ## - Prom 69898 - 69957 4.4 - Term 70049 - 70091 0.5 75 43 Tu 1 . - CDS 70322 - 70813 80 ## - Prom 70925 - 70984 2.2 76 44 Tu 1 . - CDS 71839 - 72225 133 ## BATR1942_07900 hypothetical protein - Prom 72253 - 72312 4.1 77 45 Tu 1 . - CDS 73681 - 74025 74 ## BATR1942_07895 hypothetical protein - Prom 74099 - 74158 2.2 - Term 74818 - 74857 0.4 78 46 Tu 1 . - CDS 74873 - 75850 132 ## BSU21070 hypothetical protein - Prom 75901 - 75960 3.0 79 47 Op 1 . - CDS 76093 - 76371 258 ## COG0776 Bacterial nucleoid DNA-binding protein 80 47 Op 2 . - CDS 76376 - 77119 182 ## COG3617 Prophage antirepressor - Prom 77219 - 77278 2.6 81 48 Tu 1 . - CDS 78404 - 79180 36 ## GWCH70_2831 hypothetical protein - Prom 79219 - 79278 7.7 82 49 Op 1 . - CDS 79293 - 79907 87 ## - Term 79921 - 79955 3.7 83 49 Op 2 . - CDS 79971 - 80447 -131 ## - Prom 80495 - 80554 7.2 + Prom 81740 - 81799 7.5 84 50 Tu 1 . + CDS 81833 - 82051 174 ## + Term 82076 - 82105 1.4 + Prom 82077 - 82136 3.2 85 51 Op 1 . + CDS 82168 - 82350 134 ## 86 51 Op 2 . + CDS 82373 - 82531 115 ## 87 52 Tu 1 . - CDS 82566 - 82868 126 ## - Prom 82994 - 83053 3.6 88 53 Tu 1 . - CDS 83920 - 84111 66 ## - Prom 84198 - 84257 6.3 + Prom 84099 - 84158 5.3 89 54 Tu 1 . + CDS 84192 - 84305 57 ## + Term 84308 - 84355 1.4 - Term 84689 - 84728 1.2 90 55 Tu 1 . - CDS 84739 - 84984 159 ## - Term 85010 - 85055 7.1 91 56 Op 1 . - CDS 85060 - 85230 153 ## 92 56 Op 2 . - CDS 85302 - 85691 108 ## 93 57 Tu 1 . - CDS 85835 - 85897 84 ## - Prom 85985 - 86044 8.5 - Term 86478 - 86502 -1.0 94 58 Tu 1 . - CDS 86517 - 86720 90 ## - Term 87108 - 87151 7.7 95 59 Tu 1 . - CDS 87162 - 87422 173 ## Dtox_3714 putative transcriptional regulator, XRE family - Prom 87548 - 87607 10.7 + Prom 87488 - 87547 8.6 96 60 Tu 1 . + CDS 87596 - 87691 104 ## - Term 88796 - 88838 -0.6 97 61 Tu 1 . - CDS 88853 - 88936 64 ## - Prom 89010 - 89069 3.6 + Prom 89021 - 89080 4.0 98 62 Tu 1 . + CDS 89228 - 89719 -39 ## Bsel_0552 metalloendopeptidase (EC:3.4.24.57) Predicted protein(s) >gi|333608724|gb|AFDH01000009.1| GENE 1 1 - 1099 1123 366 aa, chain - ## HITS:1 COG:BH3453 KEGG:ns NR:ns ## COG: BH3453 COG0737 # Protein_GI_number: 15616015 # Func_class: F Nucleotide transport and metabolism # Function: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases # Organism: Bacillus halodurans # 11 364 6 356 462 262 39.0 8e-70 MPEKQQKHQTLVILHTNDLHSHFEQMPKIATCFKELRRRHEGDEILTLDIGDHLDRMRLE TEGTGGAANIEIMNATGYEAMVPGNNEGLTYAPDALRSLFETKAEFPVIGSNILDADTGK VPAWMVPYHIVRKGDITVGLIGLTAAFTDYYELLGWDVREPVKAAAYWVEKLRPQVDIVI VLSHLGLRYDERMAAEVEGIDVILGAHTHHLLEKPLHIRDTLVCAAGKYGQYAGEVEIAY NVRERRIERLAGRVHAVSGWEDDAEIAEILARNAELGRRALDIPVTNLAEPLELDWYSES PLGNLLASGLRRWMNAEIGLVNAGQLLRGLARGPVTIGRLLAICPGPINPCRVKLTGGRL LQALEE >gi|333608724|gb|AFDH01000009.1| GENE 2 1256 - 2044 649 262 aa, chain + ## HITS:1 COG:BS_moaE KEGG:ns NR:ns ## COG: BS_moaE COG0314 # Protein_GI_number: 16078494 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin converting factor, large subunit # Organism: Bacillus subtilis # 102 234 3 135 157 156 57.0 4e-38 MTFHIRLFAGLADELGRPSIDITLTRDPGEKSVTVQDLLDEIGGQFPGARSLLTHCFLAK NHAYAAPDELVAETDELALIPPVSGGGGEEPQAADETSVAARYILTRDPIEPAELLHKVT HPDCGATLAFIGTTREHTHGVRTVLLEYEAYEPMAVSVMETIGAEMEARWPGSRCAMTHR LGPVGIGESSLVIAVSTPHRADCYEASRYAIERVKQILPIWKKEIGEDGAEWKGYVSPSG GREWNPLDLPEGGNGSVSKAGK >gi|333608724|gb|AFDH01000009.1| GENE 3 2267 - 3535 1149 422 aa, chain + ## HITS:1 COG:BH1419 KEGG:ns NR:ns ## COG: BH1419 COG0476 # Protein_GI_number: 15613982 # Func_class: H Coenzyme transport and metabolism # Function: Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 # Organism: Bacillus halodurans # 84 422 8 340 340 336 48.0 6e-92 MSSLHPNQPAGDLPSAAFSPSSRAGEDAAAQPAAQLKAAQAGGLHAGAAQASGEPAAQAA AVQAARTGVAAGAQTAGEAEVPARYSRHVLFKPVGENGQRALGRARVAIVGLGALGTVLA NHMVRAGVGFVRLIDRDFVEESNLQRQMLYDEEDARQAQPKASAAAAKLRLVNSLVGIEA HVADLNPLNAEELLTGVDLILDGTDNFSVRFLINDVSVKHGIPWLYGGAVASRGVSLAIL PGETPCLRCLFGSAPAHGTADTCDTAGVIGPIIHMVASYQATEAMKILIGDMRHLNRRMQ QWDLWYNHYTSVDVAGARKADCPACARHTFEYLNADIEGETIQTLCGRDSVQIHPVQAAE FSLEQWEQRLAPLGHVSRNKFLLRFRPSDEITLVLFPDGRVLIQGVTDPTAAKTLYSRYI GM >gi|333608724|gb|AFDH01000009.1| GENE 4 3891 - 4952 918 353 aa, chain + ## HITS:1 COG:CAC3650 KEGG:ns NR:ns ## COG: CAC3650 COG2206 # Protein_GI_number: 15896883 # Func_class: T Signal transduction mechanisms # Function: HD-GYP domain # Organism: Clostridium acetobutylicum # 2 342 5 343 355 177 29.0 3e-44 MRIHITDLQVGDRLARDTFNSIGLNILSADTKVDEFDILKLNKHQIEYVDIEDRPLPGSQ AHSQTAAASSELLRQEESFHSAIGGIKDLFESAVRTGKLSDPVVEQYYGPLISSVREEKD VVNLLLCLDSRDDYTYQHSVQVGLISYFISIWLGKSEEEAKEIGKAGYLHDIGKCRISFD VLHKPGKLTEEEYTEMRKHTVYGYEIIRNSIADELAALVALQHHERLNGSGYPLGKTSEA IHPAAKIVAVADVYSAMINNRSYQSKRDLLYVLKELHKMSFGELDPQAVHVFIANMVPNF IGKKATLSNGQSGTIVMTFPNDYFRPLIQIDDAGDTFVDLTQRTDLEIQFITV >gi|333608724|gb|AFDH01000009.1| GENE 5 5257 - 5580 193 107 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MREPELPSAFSSGYTPPPVKPRKTSAVLAVLCGILAVLFNLLVVTLPLGIILGITAFGSG LIARRSHRRSAGLVLSLFSFLIAGVWLASALVPLAVDPTIRVGLRLP >gi|333608724|gb|AFDH01000009.1| GENE 6 5877 - 6353 143 158 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKQYFMLLILVVLVLTGCSTDKQTYNLEKIQLITEGSQTIQADGNKLVMLEYQLTISGPS PIDTESAEISYGYSAHSKELVPINKGTLSLKSLCRRFAGGDGCKQENTTLAVRYPITFIP ESPYKEDDLEYLKLHLDEIKFKLTIGGTEYDLTDKKGQ >gi|333608724|gb|AFDH01000009.1| GENE 7 6441 - 7121 178 226 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MQSKKILHVLAVASVLTLASSSIPAYATDANSLDEPVKFEKTIETPVNTTAKLTFIDPSL KNQHSTRGDVHEEYKYSYYVVQNWSIVQYDAKPVDNQKQYLSIAKGGAKTTTVERSNSTT VSITGEADFNKIKVINLSITGNYTGTWSYKETVTESFAGPDPGYNSRNYYTGTGYDKSAW TLKKYDVYNVYNGNINTGTQEYYVGNTTVNSVYKPKIVLYSRDSNY >gi|333608724|gb|AFDH01000009.1| GENE 8 7354 - 8751 1451 465 aa, chain - ## HITS:1 COG:BH3467 KEGG:ns NR:ns ## COG: BH3467 COG0719 # Protein_GI_number: 15616029 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, permease component # Organism: Bacillus halodurans # 1 465 1 465 465 771 80.0 0 MAKQMPEMEEYKYGFRDEHKSIFQSGKGLNAEIVTEISRMKGEPEWMLEFRLKSLEQFFS MPMPRWGGNLDDLDFNDIQYYVKPSEKQGKTWEEVPTEIKETFDKLGIPEAEQKFLAGVS AQYESEVVYHSMQKELEDQGVIFMDTDSALREYPELFREYFGTVIPPTDNKFAALNSAVW SGGSFIYVPKGVKCEVPLQAYFRINSENMGQFERTLIITDEDSFVHYVEGCTAPVYSTNS LHSAVVEIVCRKNSRARYTTIQNWAPNIYNLVTKRAVAEEGANMEWVDGNIGSKLTMKYP AVVLKGRGAKGSVLSIAVAGKGQHQDAGAKMIHLAPDTTSTIISKSISKHGGKVTYRGLA SFGRNSAGAKSNIKCDTLIMDKQSTSDTIPYNEIMNDNITLEHEATVSKVSEDQLFYLMS RGLSEGEATQMIVMGFIEPFTKELPMEYAVEMNRLIKFEMEGSIG >gi|333608724|gb|AFDH01000009.1| GENE 9 8779 - 9207 413 142 aa, chain - ## HITS:1 COG:BH3468 KEGG:ns NR:ns ## COG: BH3468 COG0822 # Protein_GI_number: 15616030 # Func_class: C Energy production and conversion # Function: NifU homolog involved in Fe-S cluster formation # Organism: Bacillus halodurans # 3 141 6 146 146 177 61.0 5e-45 MQLDDLYRRVIMDHYKTPRNRGSFDDNESVSINLNNPTCGDRITLQMQVEDGKVKAAKYV GEGCSISMSSASMMTDAVKGKTLEEALEMAENFSKLMKGEDVEFEYEDIEALSGVNKFPA RIKCATLAWNALRKGIEQTKQS >gi|333608724|gb|AFDH01000009.1| GENE 10 9194 - 10420 923 408 aa, chain - ## HITS:1 COG:BS_yurW KEGG:ns NR:ns ## COG: BS_yurW COG0520 # Protein_GI_number: 16080321 # Func_class: E Amino acid transport and metabolism # Function: Selenocysteine lyase # Organism: Bacillus subtilis # 1 403 1 402 406 620 73.0 1e-177 MKPSEIRELFPILNQEVNGHPLVYLDSSATSQKPVQVIEALKKYYEWDNSNVHRGVHTLG SRATDAYEGARAKVVRFINARSEQEIIFTRGTTTAINLVASSYARSICGEGDEIVITPME HHSNLIPWQQVAKATGATLKYIPLQADGSIALEDVETTITDRTKFVSVVHLSNVLGVLNP VKAIAEIAHRHGAKMLVDGAQSAPHLKVDVQDLDCDFFAFSGHKMCGPTGIGVLYGKKEL LEAMEPIEFGGEMIDHVDLYDSTWKELPWKFEGGTPIIAGAVGLGAAIDFLEEIGLDAIA DHDASLTAYALERMLEVEGLNVYGPRNNRVGLVTFNLGDVHPHDVATVLDAEGIAVRAGH HCCQPLMRWLEQSATARASFYLYNTEDDIDRLVQGLLKTKEYFGHAIG >gi|333608724|gb|AFDH01000009.1| GENE 11 10417 - 11712 1347 431 aa, chain - ## HITS:1 COG:BH3470 KEGG:ns NR:ns ## COG: BH3470 COG0719 # Protein_GI_number: 15616032 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, permease component # Organism: Bacillus halodurans # 1 429 1 434 435 418 51.0 1e-116 MTTQTILPVDSQAVAQASKARQEPEWLTDLRVQAANLAGSLELPKLEKTRLDRWDLSSFG TYREPQALASVSELPEQVKTLVGETNIIVQRNSGAVYRALSEELAGRGVIFTDLETAVRE HGDLVRPYLGKAVEAGENLLTAVHAATWTGGVFLYVPKNVNVEIPLQALFLSDDSAASFS PHILIVADTNSSVTYVENFTSDGTGASLVQNGVTEVFVKPGANVQFASVHNLTEGVTDLT YRRAVVENDGRVNWVVGEMNQGNSMSDTTSILKGNGSYSDAKVICVGTNDQKLNLTTRAV HFGLNSSSDMITRAVMRDQATAIINGITKIEKGATGANGQQTERVLMLSPKARGDANPIL LIDEDDVKAGHAASVGQVNQDQVYYMMSRGISREEATRLLIYGFLAPVVSEIPIAKLEEQ LQTMVERKLGQ >gi|333608724|gb|AFDH01000009.1| GENE 12 11745 - 12581 171 278 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 9 234 4 224 245 70 25 3e-11 MANAPVFTIEGLKAQIEGKEILKGLSLEVKGGEIHAIMGPNGTGKSTLASTIMGHPKYEV TEGSISLDGEDVLEMAVDERARAGLFLAMQYPSEIAGVTNADFLRSAINARREEGSEISL IKFIRQMESKMKELEMNPEFMHRYLNEGFSGGEKKRNEILQMLMLDPRIVILDEIDSGLD IDALRIVATGVNAMRSEDRGFLIITHYQRLLDYVTPDFVHVMMQGRIVKSGGPELAQRLE KDGYDWIKEELGIVDETVGNDDEQEFQVPMNTTAPKYN >gi|333608724|gb|AFDH01000009.1| GENE 13 12937 - 13530 576 197 aa, chain - ## HITS:1 COG:all2053 KEGG:ns NR:ns ## COG: all2053 COG4293 # Protein_GI_number: 17229545 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Nostoc sp. PCC 7120 # 8 184 4 178 182 152 43.0 4e-37 MTHSQMALKEWASAVQALEQGEQILIMRKGGIREETRDFRVVSDAFYLYPTYEHQKPHLI KDSAQPRLQETLDGWNPDDRQVTISSWAELVRDIEISDGETLEKLQPFHIWTETFAEERL KWKRKQPLHVMLLRVYKLDNPVTLAVDPSYEGCKSWIELHGELESAGRTPVLSDEAFRAA VERVEKALADDGPVNGA >gi|333608724|gb|AFDH01000009.1| GENE 14 13777 - 14226 540 149 aa, chain - ## HITS:1 COG:BS_dps KEGG:ns NR:ns ## COG: BS_dps COG0783 # Protein_GI_number: 16080117 # Func_class: P Inorganic ion transport and metabolism # Function: DNA-binding ferritin-like protein (oxidative damage protectant) # Organism: Bacillus subtilis # 10 147 7 144 145 179 62.0 2e-45 MSIAIRSAHKVLNKQVANWTVLYVKLHNYHWYVKGDQFFTLHVKFEELYNEAAGYVDELA ERLLSIGGKPVATLKECLELSDIREAAGGEKSEAMVRTLLADFETVISECKTGMKEAEEA GDEGTADMLLGITQSLEKHSWMLGSFLNG >gi|333608724|gb|AFDH01000009.1| GENE 15 14428 - 15654 1437 408 aa, chain + ## HITS:1 COG:BS_ykrT KEGG:ns NR:ns ## COG: BS_ykrT COG4857 # Protein_GI_number: 16078420 # Func_class: R General function prediction only # Function: Predicted kinase # Organism: Bacillus subtilis # 2 394 8 390 399 376 48.0 1e-104 MTTTYHALTEAEAIAYAKGLPNIFAPDAVLTSREIGDGNLNLVFHISDEKAGRSLILKQA LPYAKVVGESWPLTLDRARIESEALQLQGSLCPDLVPHVFAYEKELALTVMEDLSDHVIM RKGLIEKNKYPLFAKHIGRFMARTLFFSSDLGMNQQEKKLRVGRFINPELCKITEDLIFD DPYRDSENNSIEDHLKDAVHAIWQDRELHLEVAILRNTFLTRAEALLHGDLHTGSIFIKE DSTKVIDPEFAYYGPMGFDIGAVLANLLLNYAGQEGWSAGEAERTDYREYLLETVKEVWT VFEREFRALWDNETVDPMSETPAYQDWYMNRVLQETIGFAGCKMVRRIYGLSHVADIDGI EDAAARERAQRLALAIGTTLIKRGRQASSIDELIAAAREAAAAKEGVR >gi|333608724|gb|AFDH01000009.1| GENE 16 15654 - 16763 1448 369 aa, chain + ## HITS:1 COG:BS_ykrS KEGG:ns NR:ns ## COG: BS_ykrS COG0182 # Protein_GI_number: 16078419 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family # Organism: Bacillus subtilis # 18 368 9 348 353 353 54.0 4e-97 MTANENGVQSEGQRGWVQSVRWNGERLDLLDQRLLPEEIVYLPLETPHEVWEAIRHLKVR GAPAIGIAAAYGVFLGIRDAEEDEAISREANRRRLAGEVAKQADYLATSRPTAVNLFWAL DRLKRLTQKLVEMDISHGEMKQAVLTEAILIQAEDEETNRRIGEFALELFEDGMGVLTHC NAGGLATAKYGTALAPFYLAQEKGVSLKVYADETRPVLQGARLTAFELQQAGVDVTLICD NMAGAVMKKDWVQAVIVGTDRVAANGDVANKIGTYSVAVLAKAHGIPFYVACPMSTIDLS TPTGEDIPIEERGEEEITQGFGKRTAPQGVKVYNPAFDVTPNEYVTAIITEKGIVRAPFA ENLAKLFEE >gi|333608724|gb|AFDH01000009.1| GENE 17 17130 - 17831 760 233 aa, chain - ## HITS:1 COG:MA2782 KEGG:ns NR:ns ## COG: MA2782 COG1309 # Protein_GI_number: 20091605 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Methanosarcina acetivorans str.C2A # 4 197 1 191 201 115 36.0 9e-26 MEKLARVTKSPEERKQELLSAAESLFRVKGYERTAVSDIVKQVGVAQGTFYYYFKSKDEL ADTMIRRMLDEHMELISSIAEDPELSGREKIIKVMKEDFVQRGENLDNLDYMHHENNALL HQKMLVESVKAYTPFITGIIEQGIREGNFHTSHPREVVEFFMVGLFFLYDPGIFAWTVEE VVTKLQAIGEILEKLLGAEKDSLDIWKDLPDMPAIIQKALKAEKAPRGESSPS >gi|333608724|gb|AFDH01000009.1| GENE 18 17991 - 19691 1838 566 aa, chain + ## HITS:1 COG:CAP0109 KEGG:ns NR:ns ## COG: CAP0109 COG0477 # Protein_GI_number: 15004812 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Clostridium acetobutylicum # 1 547 1 540 545 405 40.0 1e-112 MQKSRKIPAILTLLLGFFMAILDTSIVNVALPRMSEFYGADTAGISWVVNGYSLSFAVFL LAASRLADQFGRKKAFMTGLFLFTLSSLLCGLAGSITSLILFRVLQGIGAALITPLVAPL LLALFPPEKKAVMMGITGALAGLAAASGPALGGVLSYQLDWQWIFYINIPLGALALVLAA SSLTESYDPTATRKLDWGGMLTVSAASLALTLAFMQANEKGWDSPYILSLFAAALVSLLL FLWIESRVKEPMLPLSLFRIKRFPSGNLGLFLLGIGMTGPTFILAFFLTQVIGMTELRAG LIISVLAVASMICSVLAAKGAAKLGPRIFSVTGMILLGLGTYLLAGLTTESTTLDYIWRL VIAGMGTGMAIANLTATTVLLPPPDKTTIAMGIGTMARTIGSALGIAVLVALLSQSMRTE MASAKTELAERIASSSLSAESKAGLAEALQQAGNRGTAAAGGASGAMQGLLDQSDRKERE QLQAASPEAAGRVKEAFAKDKAELQGLLPQLQATVNTHTTAAFGLVFKISCLALLLGAVC AFVNGRKTAEPAREAERVENALRSPQ >gi|333608724|gb|AFDH01000009.1| GENE 19 20016 - 20975 1195 319 aa, chain - ## HITS:1 COG:DR2317 KEGG:ns NR:ns ## COG: DR2317 COG0667 # Protein_GI_number: 15807308 # Func_class: C Energy production and conversion # Function: Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) # Organism: Deinococcus radiodurans # 1 311 1 312 315 297 50.0 2e-80 MHYRRLGRSGLKVSEISLGSWLTYGGYVERDNAVQSIRKAYDLGVNFFDTANVYKQGEAE KVVGDTLKEYPRESYVLATKAFWPMGEGPNDRGLSRKHIMEQAHASLKRLGTDYVDIYYC HRYDPETPLEETLRALDDLVTQGKVLYIGVSEWTAAQMADALGLAERYLLDKIVVNQPVY NMFNRYIEKDIIPLGEEKGIGQVVFSPLAQGLLTGKYKSADDIPADSRAAKVETMRGAVT AENIAKVKQLEGIAAELDLTVGQLALAWILRQPNVASALVGASRPEQVEQNVKAEGVKLA ADVLERIEAVLSGSEAAGK >gi|333608724|gb|AFDH01000009.1| GENE 20 21172 - 21381 72 69 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_5308 NR:ns ## KEGG: Pjdr2_5308 # Name: not_defined # Def: transcriptional regulator, HxlR family # Organism: Paenibacillus # Pathway: not_defined # 14 48 5 39 112 65 85.0 5e-10 MTAQSGKIPAEPAASSYIPKEPCVIECSIEKTLDVIGGKWAFLVIRELSTERDASGSFSG ALLRSALPR >gi|333608724|gb|AFDH01000009.1| GENE 21 21288 - 21536 76 82 aa, chain + ## HITS:1 COG:CAC0849 KEGG:ns NR:ns ## COG: CAC0849 COG1733 # Protein_GI_number: 15894136 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Clostridium acetobutylicum # 12 82 32 102 102 73 46.0 9e-14 MGVSCYPGTFDGTRRFGELQRSIASISPTALTNILRHLEKQGVLERKAFATVPVTVEYTL TPKGRDLHKILKEMKLWAAKWT >gi|333608724|gb|AFDH01000009.1| GENE 22 21622 - 22092 503 156 aa, chain + ## HITS:1 COG:no KEGG:Bsph_2655 NR:ns ## KEGG: Bsph_2655 # Name: not_defined # Def: hypothetical protein # Organism: L.sphaericus # Pathway: not_defined # 4 140 1 137 140 191 67.0 1e-47 MTALRSEEVVKRFFDEVRSGKNLKAAPELMGGKVFAHQVQSEQEVTVERTPEVYAEHVQE MLDAYGPFTLEVQELLGSGDRVYARWKQTGTHIGEIDGYPPTGLPVIELASAVYRVENGK IAEYWIQIDRAGIERQLKRNAGEAGAVTATADGSAD >gi|333608724|gb|AFDH01000009.1| GENE 23 22461 - 23456 1032 331 aa, chain - ## HITS:1 COG:BH1248 KEGG:ns NR:ns ## COG: BH1248 COG0673 # Protein_GI_number: 15613811 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Bacillus halodurans # 11 236 17 238 340 102 31.0 1e-21 MLKVALLSFWHVHALDYEKDANQHPGTQVTAIWDEDPARGSKEAENRGIPFYENLDELLA DDEIDGIIVTTPTHLHRDVMVAAAKAGKHIFTEKVVAATNKECDEIMDAVREAGVVMTVS LPRLNASYTLAIRNILEQGILGKLTLVRTRLSHNGGLSREEGGGWLPERFFDESAAQGGA MIDLGCHPMYLTRLFLGMPESLTANYGSVTGRSAEDNAVSVLRYPSGALGIVEAGFVNSH SPFVIEIHGTQGSLLYSQHDDKLLLRTRSQEGEEWQTVTDLPQAKPSAFEQWVAHIESGT RAEENLLLAADLTRLMEASNASAASGCAVKL >gi|333608724|gb|AFDH01000009.1| GENE 24 23753 - 24373 675 206 aa, chain + ## HITS:1 COG:MA1206 KEGG:ns NR:ns ## COG: MA1206 COG3467 # Protein_GI_number: 20090070 # Func_class: R General function prediction only # Function: Predicted flavin-nucleotide-binding protein # Organism: Methanosarcina acetivorans str.C2A # 1 128 4 125 177 64 34.0 1e-10 MRRKEFGVEDWQEIEQFMSEMTFGILGTTGEDGYPNLKALNFVYADGAIYAHGSKVGEKI SDLGRNPLVTFAIAKEYALIPSYFTEPVYACPATAFFKSVVIKGHAVLVEDLEEKAKALG IFMEKLQPEGGYEPFSLENPGYVSQIRGVAVIRIDVDDLSAKFKFGQNMKGAKREAVVTG LENRGKELDEETVRLMKLYCPAHKEG >gi|333608724|gb|AFDH01000009.1| GENE 25 24450 - 24614 61 54 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFGFIIRQGKGGHSLRQTSFLHGCSISGAADALYTALAAPRVRRARMEAVADSS >gi|333608724|gb|AFDH01000009.1| GENE 26 24833 - 26590 1855 585 aa, chain - ## HITS:1 COG:BH3073 KEGG:ns NR:ns ## COG: BH3073 COG1080 # Protein_GI_number: 15615635 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) # Organism: Bacillus halodurans # 6 578 5 568 572 511 47.0 1e-144 MKGLHIQGIGVSEGIRIAQAFVYRAAHENAGGASAEWKPIAADSAVVEAELAKLREAKAR CAGELEQLTEKAKETVGEEQAGILAGQRKLLDDPAFYPKMEARIREKLEPAPQAVSEIVS QVASWFEGMTNDYMKERAADIRDIGNRLLACLSPEERAGLEGITGEVILVADDLTPSDTV QLDPAKVVGFITRTGGATSHTAILARSLGIAAIVGAGDAVDGIDDGDTLVVDGAAGLCIA RPGEAEAEQYRLRMGQDLERRKSLEAYAARPAVTADGTRVELAANIGTAAEAGAAAAQGA DGVGLYRTEFLFMNSPSMPGEEEQYRAYLEAAQLMEGRPVIIRTMDIGGDKELPYLQLPK EVNPFLGYRAIRIGLSRKELLLTQLRAVLRASAFSKVKVMFPMISGLQEWRQAKEILAEA QAELRQEGVPFDEDMEVGIMVEIPSTAVMAGQFAREVDFFSIGTNDLVQYTLAVDRMNEH VAYLYDYFHPAVLQLIRTVIEASHSAGKWTGMCGGMAGDPLAAPLLLGLGLDEWSMEAGR LSPLKEVLAGLDRQECRELAERVLLLDTPQAVRQALEEFRGTKAV >gi|333608724|gb|AFDH01000009.1| GENE 27 26590 - 26859 263 89 aa, chain - ## HITS:1 COG:NMA0391 KEGG:ns NR:ns ## COG: NMA0391 COG1925 # Protein_GI_number: 15793399 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, HPr-related proteins # Organism: Neisseria meningitidis Z2491 # 1 89 1 88 89 60 40.0 8e-10 MFAQTVTIQNAQGFHVRPAQLFAETAGQFGAEVHLKTGDGRTADCKSMLELMTLGIEKGA VVTIEASGDGEKEAVEALTQLVESKFGEA >gi|333608724|gb|AFDH01000009.1| GENE 28 27126 - 27860 774 244 aa, chain - ## HITS:1 COG:BH0227 KEGG:ns NR:ns ## COG: BH0227 COG4821 # Protein_GI_number: 15612790 # Func_class: R General function prediction only # Function: Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain # Organism: Bacillus halodurans # 1 244 1 244 250 333 65.0 2e-91 MMNTYFDVIGELLNKVRTEQAGPIREAAEKVAACIQDGGIIHLFGCGHSHILTEEVFYRA GGLVPIRPIFVEKLMLHEGAVRSSELERQNNLAVDFMKEQDIRKDEVVFVLSTSGRNPVP VDVALMAKEKGAVTVGITSLEYSMSQPSRHTSGKHLAEAVDLVIDNFSVKGDAVLNHPGL QVPFTPSSTVIGAAILNAVFAESIEIMIENGFNPPVFLSGNIDGSDAHNQALIQTYKERI ALLA >gi|333608724|gb|AFDH01000009.1| GENE 29 27880 - 28638 875 252 aa, chain - ## HITS:1 COG:BH0226 KEGG:ns NR:ns ## COG: BH0226 COG1402 # Protein_GI_number: 15612789 # Func_class: R General function prediction only # Function: Uncharacterized protein, putative amidase # Organism: Bacillus halodurans # 1 249 1 249 249 328 63.0 9e-90 MKFEHENSYEVQDKIRQFRAAILPIGAVEAHGPHLPLGTDNLLAERLADKLAARTDSFVL PVLPYGQVWSLRNFPGSINVSNEALIRLLADIGESLYQQGFHIFTMVNGHLGNAVALKEA ARVLYERVPELKVFYFFYPGTKEITAQVRESSAAHGTYMHADEIETSYMLYLAGEYVDMS KAIDGAPRISAEADCTPTPWEEITSSAVLGDATLATREKGEKIIERSLDVMAEMLLRAKQ ALEDGEHQDSTD >gi|333608724|gb|AFDH01000009.1| GENE 30 28652 - 29644 1296 330 aa, chain - ## HITS:1 COG:BH0225 KEGG:ns NR:ns ## COG: BH0225 COG1735 # Protein_GI_number: 15612788 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase with the TIM-barrel fold # Organism: Bacillus halodurans # 1 329 1 330 331 537 77.0 1e-152 MSYIRTLHGDIAKEDLGFTYSHEHIVCRPAFWQERGEDDLLLDDKEKSKRDVLDFKKHGG RAIVDATAVDYGRDVQAVQEIALETGIKIVGTAGFNKSFLWDAKIKEELKPLTGDYETYT QWIEAKSINELADFVIREVEEGLEGTPFKAGQVKFGTGYNRITPLEEKTLRAVARAHHET KAPVHSHTEVGTMALEQIELLKSEGVDLSYLSLGHMDRNPDPYYHEQIAATGAYMSFDGI GKIKYAPESTRIALILNLVSKGYEDQILISGDTARKTYYKHYDHGLGLEYIIAKWVPRFV DEANRNGFDGQKLIEKFFVKNPANCFSFKK >gi|333608724|gb|AFDH01000009.1| GENE 31 29745 - 31034 1556 429 aa, chain - ## HITS:1 COG:lin2798 KEGG:ns NR:ns ## COG: lin2798 COG3037 # Protein_GI_number: 16801859 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 429 3 432 432 575 75.0 1e-164 MLFWIATNIFGTPAILLGFIVLVGLLLQKKSTSQLVSGTFKAIIGFLVIGAGSDVIVKAL NVFEPMWKEVFGLEAGSLGTFMGQEAFNGKYGSAVTLAMLVGFLINVALARFTRFKFIYL TGHMMFWTSTIFAGVIVHASSGIAIWKLVLMIAVVLGLYWTFQPALVQPFLRKVTGNDNI ALGHTSASVALLAALFGKLFGNKNNDSEKIKVPKGFEFLRDSNVITALSMGILFLIGAII LSTKGTPAAAELMAKSGDQNFIIYSIIQSFTFAGGIAIVLMGVRMFVGELVPAFNGIATK LVPGAKPALDAPVVYPYAPNAVVLGFLGAFAGAIIWLLVLGNTVSYIFVPTMIVLFFHGA TAGVFGNSTGGVRGAVIGGFITATIVAWGQFLMVRFFIASTVPDTAMWAADSDMFIIGPI LHFLAKLFF >gi|333608724|gb|AFDH01000009.1| GENE 32 31061 - 31324 368 87 aa, chain - ## HITS:1 COG:BH0222 KEGG:ns NR:ns ## COG: BH0222 COG3414 # Protein_GI_number: 15612785 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, galactitol-specific IIB component # Organism: Bacillus halodurans # 1 87 1 87 89 112 72.0 2e-25 MKILCVCGLGQGTSLILRMNVENVLSGLGVSADVEHTDVSTASGTAAEYIITSNELAQSL QGHAAKIVIVNNYFDNDEIKQKLEEVL >gi|333608724|gb|AFDH01000009.1| GENE 33 31321 - 31764 579 147 aa, chain - ## HITS:1 COG:BH0221 KEGG:ns NR:ns ## COG: BH0221 COG1762 # Protein_GI_number: 15612784 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Bacillus halodurans # 1 145 1 145 147 152 53.0 1e-37 MKFLEPSLIALDVEAETAEEAIRLAGGLLADAGAAEARYAEAMVESYRDKGPYFVLAPHI ALPHARAEDGVKEASVSLLRLKKPVEFGHAANDPVQLVFALGGSTSSEHITMLRKLTILL SNPDNVEAFKQAADVDTIQQLIRGNEQ >gi|333608724|gb|AFDH01000009.1| GENE 34 31791 - 33887 2091 698 aa, chain - ## HITS:1 COG:BH0220_1 KEGG:ns NR:ns ## COG: BH0220_1 COG3711 # Protein_GI_number: 15612783 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Bacillus halodurans # 1 550 11 556 556 392 37.0 1e-108 MTLLQQAADYVSLEELMQKLGISRRTVYYDMEKINDWLKTIHLPPVEYVRAAGYYLPDES RKGIPQLAGQLPVQQYYLSPRERLAWLAVHLLSPADGSLFVHHLTDLLQVSRGTVLKDLN IVRPELESLKLKVAYDRKQGYRVRGEESDKRKALTYYFGQIFGSVGWEQALSRSEDPGSL DPVLDLFPPMKPDHLKRVYRLIADSERTLGVELTDEMVFNLTTRFLLYTRRIQNKQLISI DEDEWSVLGRMPEYEAAARIAEGLGDLFDAAVPDEEIAYFTMHLLGARVNRMEQLTGSEE VIDKLRDAAREMTDAFQRHACVFLPNREAMEENLLVHLKPAYYRILYGLELDNPLLGNIR SKYGEVFELTRRSAAPFEELVGRRLDDDEIGYLAMHFGGWLRRENTEPVQRRQAAIVCVN GISASRMLKSQLEDLFSAVDITAILSLRDYEAFEEESVDFIFSTVPLPDSSVPVFVVNPI LSDKDKEHLLNQINTVVGRKSRAQASSVQALLDIVRKYAKVTDEAGLAEELNRYMSVGKT WLSEARKPSLADLLTGPMVRVEEEAADWRSAIREAALPLLEDGRIEEAYIGAMIAKVEAL GPYIVVAPGIAIAHGKPQEGVKRLGISLLRLAKPVAFSEETRYQVQVILVLAAIDGESHL KALSELTLLLREQDSLTRLKDAGTKEQILQQIKEGPRS >gi|333608724|gb|AFDH01000009.1| GENE 35 34207 - 35046 912 279 aa, chain - ## HITS:1 COG:VNG0479G KEGG:ns NR:ns ## COG: VNG0479G COG1028 # Protein_GI_number: 15789712 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Halobacterium sp. NRC-1 # 1 273 21 308 316 171 39.0 2e-42 MVTGANSGMGLATTIALALQGAKVVMVCRSEKRGQSALREAIAASGSGDIELMQCDLGSL RSIRSFAADFKSRYDHLDVLINNAGVVSLKRETTSDGFEVMMGVNHLGHFLLTNLLLGPL KRAEQGRIVVVSSGAHKIGKIRWEDPYLTKGYTVWTGYAQSKLANILFAKELAARLKGTA VTVNALHPGAVGTQIGVDRNTGFGKSVLAMLRPFFLTPAQGAETAVYLAASDNVSCATGE YFYRKKIAPVSARAKDKELAAKFWDWSVREVGLRPSETE >gi|333608724|gb|AFDH01000009.1| GENE 36 35141 - 35938 819 265 aa, chain - ## HITS:1 COG:aq_1983 KEGG:ns NR:ns ## COG: aq_1983 COG0483 # Protein_GI_number: 15606978 # Func_class: G Carbohydrate transport and metabolism # Function: Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family # Organism: Aquifex aeolicus # 1 236 1 236 264 130 36.0 3e-30 MEDILRAAKKVAIQAALQAGQEAKNRFENINSILEKDDFGDVVTEVDHLAEEIILTHIAK SFPDHCVDSEEIGHNGRQSDWMWIVDPLDGTNNYAIGLPLFATSITLMHQGNPVLAVIYE PMVDRLFLSAADKGAFCNNIRIQTKPCPSIQRGTIGWIQGHKVQNEARAVKLRHHLDVRF KRMMRVWAPTLQWCMLAKGDLDGIVLYNSEGTDLYSGILMVQEAGGLVMDYEGKPFRGMS PEPYLIACHPAHKEHFLKTVAEGLG >gi|333608724|gb|AFDH01000009.1| GENE 37 36014 - 36550 564 178 aa, chain - ## HITS:1 COG:BH0443 KEGG:ns NR:ns ## COG: BH0443 COG1670 # Protein_GI_number: 15613006 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Acetyltransferases, including N-acetylases of ribosomal proteins # Organism: Bacillus halodurans # 1 176 1 174 178 158 48.0 4e-39 MIRFAYFGREDFDQLIEWSGDEAFLLQWAGPQFKYPLTASQLEAYTEGVNDLEQSGRLVY KVIDSETDLTIGHLSIGNIDRHNRSARIGKVLVGHTARRGRGTGQAMIREALRIGFEELR LHKMTLGVFDFNEAAIRCYEKEGFVREGLIRDSKRMGDTYWNLIEMGILESEWHGRGR >gi|333608724|gb|AFDH01000009.1| GENE 38 36557 - 36874 362 105 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRSEKGTEPVNGGRRLLTWRYYSLLLLLTVGLEYGALVAVHLPFGDELTGFLVMMAMLAF SVLLAIFTFVFGLLTCLENRQPMLIVPCALLTAGLYLAIIKWEGM >gi|333608724|gb|AFDH01000009.1| GENE 39 37318 - 37806 454 162 aa, chain - ## HITS:1 COG:BS_yrdA KEGG:ns NR:ns ## COG: BS_yrdA COG2318 # Protein_GI_number: 16079731 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 161 1 161 167 149 47.0 2e-36 MFVSLNEFQQEWKREASLTGKILNTLTDESLDQSVALDHFSLGELGWHLSQAMYGLFSAA GLKFEGPERGAGVPESAKEIADVYERTSSNLLRAAGEQWTDETLKQSITVFGRETTIHGI MRFVIQHQAHHRGQMTVLMRQAGLIVPGIYGPSKEEREQIGK >gi|333608724|gb|AFDH01000009.1| GENE 40 38054 - 39031 918 325 aa, chain + ## HITS:1 COG:CAC3378 KEGG:ns NR:ns ## COG: CAC3378 COG4989 # Protein_GI_number: 15896620 # Func_class: R General function prediction only # Function: Predicted oxidoreductase # Organism: Clostridium acetobutylicum # 12 325 13 306 306 258 42.0 1e-68 MNILPLKKRGLNASRLVLGCMPFGGGWNSDPVTKEDETQAQKAVEAALSIGISMFDHADI YTRGKAEETFGRILKNKPGLREEMVIQSKCGIRFAEGDVPGRYDFSKAYIGEAVDGILRR LGTDYLDILLLHRPDPLMEPEEVAEAFGRLKAAGKVRYFGVSNMSAAQIRFLQRALPDQL AVNQLEMSLARHDWLDQGVHVNQKAGTSVNFSEGLLEYCRMENIQIQAWGPLAQGKFSGN LGESEPEHIRKTAELVGKLADEKETTREAVVLGWLMRHPAMIQPVIGTANAERIAACRDA ERQAELMTREEWYSLYVSARGSFLP >gi|333608724|gb|AFDH01000009.1| GENE 41 39173 - 39517 123 114 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTVFLLLAGLIYLIRGYVSVYPVRSVGLTDWQAAQVVWIILLVCLLVCAVIVILQGLQTY LKKKGSFKRTNMRQIIEAGRRRIWKHVRLLAGKPECWVILSSGELEVLLWLNYW >gi|333608724|gb|AFDH01000009.1| GENE 42 39833 - 41509 1920 558 aa, chain + ## HITS:1 COG:lin0153_2 KEGG:ns NR:ns ## COG: lin0153_2 COG3979 # Protein_GI_number: 16799230 # Func_class: R General function prediction only # Function: Uncharacterized protein contain chitin-binding domain type 3 # Organism: Listeria innocua # 104 198 1 95 141 82 53.0 2e-15 MTSYATPRKKMIHLALAFTLGLGVVPALASSQAHAAGTAAAACQDPAWNSTTAYTAGKRV SYSGKTFEAKWWTQGEQPNTANTWGAWKYVSDCGSTGGGTTDTQAPSVPSGLKATASTST SVSLSWAASTDNVGVTGYDVYQGTALAASVTGTTALVTGLTASTAYSFTVKAKDAAGNVS AASAPVSVTTPEGGTTPSPDRRYVAYASTWNTSIYDLKLENIPNYITDVNLSFARPDTKY VKGSYAFDQEVAGFEFVEGATTGRGQLKFTPQQSQDLRSSIAALDARGTDTWLSVGGWSY SQGSQWANFNAPHVVDLALDLGASGVDIDWESSGSNCNKAAAESFSCSKDAEIAGIINSL YNEIKARGAKLKISIAGWSTGAYYVKGSPFEEGKVQYGSPFGGTMYRVVKDHGSKIDMIN LMSYDGGVYYDPREGYESYRAIYGGTINMGLQIAPEGSGGAVLKLNAAPGTVYDAEMLNG QNNVASAYYNVETLVKYVKNKGKSFDGFMLWQLWKQRVHLPAPSDGATENSAGQYVCRNL PLAGDCSQTIPTLPKLTP >gi|333608724|gb|AFDH01000009.1| GENE 43 41826 - 42026 228 66 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MPTSIIQLFNSDQLIIVMFLMWVLISAMFMVFHLDGKKSKRTRNKVDPKREELPEHEHRK NERGLL >gi|333608724|gb|AFDH01000009.1| GENE 44 42039 - 42263 202 74 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MDEIHQHIEEIRREMMRLAGEYGFSDSRVLTKSQELDRVLNTYQREKCKLKEQKYPGVIH LSLSSVTGPAEFIN >gi|333608724|gb|AFDH01000009.1| GENE 45 42460 - 42597 102 45 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKRKLSVLLVLSSVAIAVLAPSTGFSAQPQTQVHKIVQLGHGWGN >gi|333608724|gb|AFDH01000009.1| GENE 46 42594 - 43955 678 453 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_4017 NR:ns ## KEGG: GYMC10_4017 # Name: not_defined # Def: helix-turn-helix domain protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 7 451 6 448 462 441 48.0 1e-122 MGPKITSIRTQLKSYLDRRQMTINQFAEVSGINSGTLSIILHGNRPIAMQQLDRMTAGMG LHEGHFYDVYIEECFFHSNPDWRRLGPLIHRCAELGKLDLLLRVVRLMLENLSYLPLLFE TAEHFHSEGRREAAALLYECIAESEKYQHSERLALCQYRLFTLAIGDDLKANLRAATLFE SYVPRLDVSDQLDALNQLAYVFGTLHEWEKVDTLAQELHRIAAIQYRLEPASEPGREAIK QPKRPLCYYILQALLIRSVVCEERGQFDQALHYVSLYAEPDWLREQSDEEKRIVEQFREW AVANTYLYRIMSGELMVLPEYINCIASRKDDIFTALCKIVQIANRYGYEIDDILDRFSSH LPYQTYQSEFGEYNKPVMKERYAQFLSDLAAYHLTQNRRKGIKFVLHGLEFSVRINSERN IIQCMALFERFRHLAGIEEKNEFKHLVNEVRLG >gi|333608724|gb|AFDH01000009.1| GENE 47 44104 - 44445 116 113 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKDNVHVFPRKKRGGRLRSGSTRTRGFPSFLHHFKYGVTAGHAREDPHLLGRMRNGFQRS VEQLADCFHTCGTGGDNLAVAQPFVQQGDIKCSAMDVIVLKPLINLGLSNQIS >gi|333608724|gb|AFDH01000009.1| GENE 48 44460 - 45572 323 370 aa, chain - ## HITS:1 COG:mlr0475 KEGG:ns NR:ns ## COG: mlr0475 COG0582 # Protein_GI_number: 13470699 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Mesorhizobium loti # 35 365 39 385 399 134 28.0 2e-31 MPEPKKNPKTETWEFVFDYYVKGVRKQVRRRGFQTRKQASKAMIALQNEVLEEKFVCTDK TTVGAFVQNWIDTVRKLEIDETTMYNNKLYLKNHIMPRIGKMRLQKLDHIVCQEFVNEMH EKGYARNTIDRVVTMLKKALDKAVQYKLIRENYMRQVTLPRVVKKAKEIWTAKQAIQFLK ATEDRRFHCVYALALLTGMRQGEILGLRWKDIDFERRIISINQTLTHYGKSIKSGAKTAA GIRTIAMPNLLITILKKQHEKYIELKQKLGEKFIDMDLVIFNLSNGKTVFPSNLTKVYTA DVKRAGLPHITFHSMRHTHATMLIEQNVNVKLISERLGHSKIGVTLDTYSHVIPSMQQEV ADTIDEIMVM >gi|333608724|gb|AFDH01000009.1| GENE 49 45659 - 45841 135 60 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIRKNEKKVILGIKDIMERLQIGRNMAARILASDELHVFRINEKRFVHEDVFEKWLKGDQ >gi|333608724|gb|AFDH01000009.1| GENE 50 45931 - 46416 273 161 aa, chain - ## HITS:1 COG:BS_yoqD_2 KEGG:ns NR:ns ## COG: BS_yoqD_2 COG3645 # Protein_GI_number: 16079126 # Func_class: S Function unknown # Function: Uncharacterized phage-encoded protein # Organism: Bacillus subtilis # 46 148 14 112 127 58 32.0 4e-09 MSGEKGVLFTAAYVKKFELMERYIAHGLDKFNIPSTMSGALQLAGEIQTKLEIAQPKADK YDQFLNTEGLIQLNEVAKHLNVGLKTFYAILRTEGILMKQKKPNVHIPTAKYANKGYFSV VREQIPNKDGKMVWHSIAYATHSGFDFLSKFVSAYIQDETA >gi|333608724|gb|AFDH01000009.1| GENE 51 46850 - 47470 -336 206 aa, chain - ## HITS:1 COG:BS_yotM KEGG:ns NR:ns ## COG: BS_yotM COG3331 # Protein_GI_number: 16079041 # Func_class: R General function prediction only # Function: Penicillin-binding protein-related factor A, putative recombinase # Organism: Bacillus subtilis # 5 181 5 175 195 72 31.0 6e-13 MKKINEGKKFEKNYESAVNRTAYFFLRLKDSAKWLRGSGATFTPENPCDGIQYAAPFLWL IELKSTKGSSISFNPERPEEKPQNKTTQVMIKAHQVKSLMKFATKDGLIPGFIFNFRERE TKTKSYPDETFFVHINDFISWSKSSGKSGINRDDCKTIGVKIHSSEKQKYDISKFVDEAV QVFIRRGYIKSEFIKGMSEYFLTISK >gi|333608724|gb|AFDH01000009.1| GENE 52 47475 - 48191 175 238 aa, chain - ## HITS:1 COG:lin0128 KEGG:ns NR:ns ## COG: lin0128 COG5632 # Protein_GI_number: 16799205 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: N-acetylmuramoyl-L-alanine amidase # Organism: Listeria innocua # 1 184 1 165 289 108 36.0 1e-23 MGLQLEFILSKSSKRLSDLHPTVKVAAEKLIINSYKRGVPIVITQGLRTFAEQNALYAQG RYGDKRPIVTNAKAGESFHNYGVAIDFALLLPDGKNVSWDMQRDGDGDRQCDWLEVVEEA KKLGFQWGGDWINFKDSPHFEMTFGLSIKDFQLGKRPPVVNESIKEVEDNMPLQLNDYEW KMLNGIWSQRYNKGEIEDWKWIEKIRCKQLNAGELAFLNAVIAAKKDCLSVEAESAGM >gi|333608724|gb|AFDH01000009.1| GENE 53 48191 - 48295 75 34 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MIYHLFLVFISKYSNDLFELFWNEYIYTSKVFDN >gi|333608724|gb|AFDH01000009.1| GENE 54 48680 - 48820 163 46 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MDWFKTVKVYYDKGFYTNDNVKVFVVKNKITLEQYEIITNEKFSIE >gi|333608724|gb|AFDH01000009.1| GENE 55 49142 - 49615 -20 157 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFVPFRYGYGAFWAPALGQVVVSGYGYLYANNGETLDTAYRTTNMAYINTNGTITVQDTV GVPEYTTTAEAQSINDGEYLFVGGSGSGPSYIFRTSDKTVLARFNGATANPDGFGVDRNS TGMSWDFGNHLIARTNTAPNSSSNTQISLQYLNTYFG >gi|333608724|gb|AFDH01000009.1| GENE 56 51062 - 51679 310 205 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MAVNLSTFPVKIDEFQRHYELQAQDIPGVQRFQELKLKANRTPAEETELANLTVQYREKF ISADDFNRFQDALVNMEIFIKDNVEGYILTKQGEFTTYVDIATNTVQATKDSALQTIEQK KENVITYLDGTTAGALRNDIGVMGDLETVNKQSLVKVANELRSDNIKIDNKIGALSTLNT TDQSNIVKAMNEIKSNLEIAYWMGV >gi|333608724|gb|AFDH01000009.1| GENE 57 51684 - 52691 23 335 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|225405435|ref|ZP_03760624.1| ## NR: gi|225405435|ref|ZP_03760624.1| hypothetical protein CLOSTASPAR_04655 [Clostridium asparagiforme DSM 15981] hypothetical protein CLOSTASPAR_04655 [Clostridium asparagiforme DSM 15981] # 26 282 27 296 367 80 26.0 2e-13 MAIQKPYNISLKGTTVDAKDSIKVSWQSSGDMSTAFEVRIYRNQDNNLIYDSGLITSFAK AYSLPAFALPNGYELKVQVTIWDSSNNFAVSDTEIFQTSSRPNISVSPIGIVNSQSYEFS ASYTQTENVPLRSWIAFLYDKDRTLISQSNVRTSAPLVYLIHYLKSGSSYFIEFQATSNK GSVGTSGLIPFTVSYLQPDISINLEAKNVKNAGIQLSWQTIQIIGKTTKQPIYLNGEKLD LRDDVFTFTDGFHVDADFTLKLWFEDIKPYTDLLVLKGQNGIMTLQYWDDDQRFHLFREV YNYRSHYASQPLTGSGYFLCIQQIGGDMNIFGEVN >gi|333608724|gb|AFDH01000009.1| GENE 58 52710 - 54056 117 448 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTNEDFIKAVRQIVNIELKENNLAIGHWHLGTVTKVKNKTLLSISINGSATSQDVPCNPD VNFIKGDLVYVVYVNGDSKNKFVPYKRFADENYIGSSVANQVLGNLSLNHKEESGLTAPY NFTVIQGTRGGVQYSELWILVNAYYDYKAKRFKRKNVNNYSFGWQFQGMGTYPGEENFGD YSNQGVNLWKANGKSAYGVNDPARDITNEDIGAVQSDGSWREFGIMLGWNNVFMCDSYGG MTIGGAGFEIDGNGTSPFKRVSLNKFNGGSVDSSKGYEQYGYAYNGNLWNAFHGMHGSDQ NNRNSFFWGLVSPIDFYDQGYHNPYSNQASMEDVKYVLRMKPKNVGHQVENWKDILSLDM DGNMKVKDKTVPAILPVKADVVNGTDFNLSYPDPTWNKNNTYITGVIGVQSDGSLKQFGA INATFTDYGAYGYLGSGFVSAKLLLSKY >gi|333608724|gb|AFDH01000009.1| GENE 59 54069 - 54869 -54 266 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MDKMFLCTDKRGKFRTETTIEVGGNIGAIIKLLAQKYGETQFNFDPITETIPYTFTFQPS DNIYKAMSDLALLAKCELFYDVNGYLRLRKIDLNQFEQSPSVWKYVYGDPNERFYAGNVR KFDENQLANRILVLGGSSQIAESRYELIVTESNSLWKDHPYSIEKIGEITYEHNSGNPDS LLATNEECKWRAKYELMNRLGYAERVSLSLSPNHLHDANDVIEIEDIENSVTGKYLLQSF SLPLTPQLMNCECMKYRRVISDWNFI >gi|333608724|gb|AFDH01000009.1| GENE 60 55259 - 56113 7 284 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|225405434|ref|ZP_03760623.1| ## NR: gi|225405434|ref|ZP_03760623.1| hypothetical protein CLOSTASPAR_04654 [Clostridium asparagiforme DSM 15981] hypothetical protein CLOSTASPAR_04654 [Clostridium asparagiforme DSM 15981] # 21 251 8 248 294 66 27.0 2e-09 MTIIGYDFYGTQFFRSPGNAIKDIFYGELKGGIYDELEIRDRTDAPTDKNKTKWELDHRA IFKFAGDLEGGNISNSGLEIVSFAIKRRRVNEIDSITLEHIPFINNLSINYEDYTQPNDE LIYTIVPIAQNELEGKPVEVHVKSDFVGWWLVDKETDNTLGFDSAIGEIGSVETALNQGR TVIETLSRFPSVYYFDKDYHTFSLSTAIIPSEFERSGQNYEKIVNTFIRDHRPFIVKSDT GRIFVCDCSNPRFSTPLNTWKDYDYGVLTIDFVEIQDYNEFMNE >gi|333608724|gb|AFDH01000009.1| GENE 61 56150 - 56368 87 72 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MEYVQYQVLNISQEQLGIRFITLDAYPARVPFYESLNFIQNVQQDARKGTVSMRFDIFSS SESLNMVNEDTA >gi|333608724|gb|AFDH01000009.1| GENE 62 56698 - 56874 107 58 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGKKGKRMATQIAETPVLYGKDAEAVLKQIQSKPSERQLELLKKQYEQKFANIQTRRR >gi|333608724|gb|AFDH01000009.1| GENE 63 57112 - 62694 1705 1860 aa, chain - ## HITS:1 COG:CAC1883_1 KEGG:ns NR:ns ## COG: CAC1883_1 COG5283 # Protein_GI_number: 15895158 # Func_class: S Function unknown # Function: Phage-related tail protein # Organism: Clostridium acetobutylicum # 56 583 121 702 1592 65 22.0 2e-09 MADDLRILITAGLNVGKTTTEINKAVAALDKKIDKLQLRIDVDQNFTKNIQSFTGAIEKL KKQLEELNKTFQNTNAVNNYKKSLSDTDNQLKTLGNTAQASRAHVAGIGEAMASAIAGTL TWGVATTAIYGSKRAMEEMLQVIIEVDTQMTHLKRVMNADTNFEEMLNGSISMANELGQK ITKINEALIDAAQAGYAAQEALDITRTATLASNVSDLSPKEAMSNLIAAMKAYKIEAKDT IQIVDKLNQVDNDYSITTKTLSQSMEKAGATAATYGVSLDELIGYTAAIGEVTRESGNII GNAQKSIFSSLYSKKAATALAEVGVAITDVNGQNRKASEIINELGSKWKSLSMTQQQHTA LSIAGKYQLTRFLALMGNFDIAIKATQTSLTSQGSAFRENEKYMDSLQAKLNLNSAAWQN LAITIGNSGVTSAFSAIVTGITGMVKGFTSLTEATYGINIYLPVAIAGVYGLVKAFNALK AAGIGLKASFGWIGAAVVLAELLVSAFVGSTKSVEVNSQALAENANQTRMNADNLQSLVD QYNKLEPLAAGNSEKQKELESVLNQINSIAPQLIEHTGKYGDSLSLNKEKANEYIESLRQ MTKEQVEQAKLANGIELNNVNTEIAKAEEKLKKLGTNVSKEFSDLKVYQKLFNAQTANEA RENFSNMTRQMKSEIKSLYDSGDISKALLKEEELNKLKTKFDAFLIMLENSGERLKGYSD AVNDKNGLEQKKTQLLERERAIDKLTQTQDKARGSTDQLSGAFNEQTGEIENNTDALQDN NEQVATGIAKNQNFIKQFNTTTNELKTLNNAISDVTKGQALSSEATQDLILQYPELASYV QISAEGFTIEKSALDKVRQAKIDKAKADLENEKASTAAAISNTIARMQAYGKEIGAIRSV AEAKGKLEDVNRKIIENSKPGIEEELGFKVATIPNQYREKFEQQKRAQLAEANATRDALR GFISEMTGFDAQIAVLQKTLDNPNLGVSSSKTKTPKEKSAKTKSEPSAYDESEKYKINEY ERALRSLDDELRESEAIINRYPDTSKDYRDELTKQVDIRKKMQALAHNEAERLRSEISDV KNKIAVGKLNQKQENDLLKQLEQKENNLSRLSNNWWDYQVAVESTQKKITESIAKYNKEQ FDISKNWIDQEKYYKRLSLDDELAAWERVQARYDQGTEERLNADKEVYRVRQELLSKYEE DFNKVMEKASQAADETIEKLRKKMETKESFNPGELADSVDAIMASIDMIDKKYPNGYSPI DTSDEARTRLNAYKGNITGLAANMKSMMEMPYQNADQLKNMIDGQIMFAGNIKKLMNETN ALIKQTETAYRMQEASLENQIKLHQQRNDKIIEGLNKALEVKDTFNSTDFSTSINSILSA LDALDGKYVKGNFVESTLGTREDLESYKKKVTEIAEAIKNYQNSANFSSSSITEQTNYIN GLKAQIDSLNDSIRVKELQYKNEEEALAQLIKAKEKSYDDEINKQKEALKNLDEQIDKED RLKKLKDINDELDKVKNDKRFSYINADGKEILTYDKGKVAELEKQRDDLLKQYEREDVKK ALQDSIDELEKTKNETIQKLQEQLDKTKVIHQNELESQKLYVKSLEDLYRIGLQDVQNKI GQLKSQYDTEIANEQARLDTLRQVHQSELDSMNMYAGYLSQLNQFLTQDTQTKIDTLKTI YDKEAEDLKTHLKEMVETTEAGKVAFHEVLDEYTGGAISKLETMVSSARDRLKEMQAIMA AMASMSGGAAPSSANVPKYHTGGVVGSAPLASNEVPAILKLGEEVFTQDHIAKLKSVIMQ PINFVGSILGTVRNTIPDTPIRNNQAMAGPTYNLSNFTIQANNPTELFSGLNNLIKSNRT >gi|333608724|gb|AFDH01000009.1| GENE 64 63538 - 64053 221 171 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTKAKNKKLALTLEQATTQDEQYDKLKKVVFDDGAYTEVYVSFRPSKIETMTEQLAIFLQ EYEKHQGKIEDDNTFHKFLYLHVVVHFSTIVSELPSDFSTKLDLFTKLADNEYVRQLESR FDNKEIQKIYEMIFKRLDDYQNLIEQNKKLSNQMSEKVNQLNIQNKELLNA >gi|333608724|gb|AFDH01000009.1| GENE 65 64170 - 64904 361 244 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MALIADVFIAQMIDKDGQVFASTTLQSGDIDFNVKENEVRGGRGNALQGVLHSDRDISVK MTDSLFRYDWMARQLGQSIVTGAGKAYAMPEWYTASGSTTIKISLPEAPIADTLAIYKAD GTPIPKANYTLSSKDVTFTTGVTAGEKVEVRTFQYATSAKTETINIDNSVFARGTKLVLE TLEIDNDETPLYKIQYIFESAVPTGNFSVKTASERNGQAQQFDLKVLKPKDSNVIGQVVR IPLA >gi|333608724|gb|AFDH01000009.1| GENE 66 64947 - 65666 150 239 aa, chain - ## HITS:1 COG:no KEGG:BATR1942_07965 NR:ns ## KEGG: BATR1942_07965 # Name: not_defined # Def: hypothetical protein # Organism: B.atrophaeus # Pathway: not_defined # 6 217 7 219 241 64 26.0 3e-09 MESVKYILGKPEIDIEAGEIFPIKVKDYDEFNDCKNVLYITKNHFSNEYQEYPLLDLIVY GMKDVEMIRQLKLLIKLVTGRDPLLREDDNGCSFIINSDKKVYSSNYESFRSIVMRQNLL FEQKVYKNKLTQEWANKAIEAKSKNGIPITFEDMITTVSVITGKTYDQIGEQTIYQLTAD FKRISRDKSYHTSIAMKCAGAEKVSIEHFAEEINMFENPYDSLFVGKDNLNHLNKAMKN >gi|333608724|gb|AFDH01000009.1| GENE 67 65667 - 66155 212 162 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MARFEQLNKNISGLLSNLIENQNLCKLLFYAVDDPLSEPDMSDDQRSSLLNEHIFPMPKI PGEQEYEASFLSIYLDNFKPSVENKGVKESVLVIDVLIHNNLWMLNDKALLRPYLVLHEV DEMLNDKHILGFKKMPFDRGRLVRYNSDYSGYQVTYSVSSVN >gi|333608724|gb|AFDH01000009.1| GENE 68 66173 - 66790 254 205 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKDYSKWMSPNSDSEEIVFDLCEKSKVKINDLSTGSVTYDAIINDANEWQKDVDMIVLIK KTVYEIKTGDYIEIDNTPYIVLFQAEDRDFFWSVRVRKCHSRLKWTNKAGQLIEVPFWLE NVTSAVGIESGKIINLPNEERKVTIQFNVDTAQIGKSHRFILDRRAWKVSAIDGLSRANL LTLTLQEVAISSSDKVEEGIAYNKW >gi|333608724|gb|AFDH01000009.1| GENE 69 66795 - 67226 213 143 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MPVTLEKIYDVFYSSINEDLAKHPELDVNVPDNIVDTFLNSAVYEYEENFGEEIICDTNK TEILNDIPRHHIRLLGKLIYKSYMERELNSCLKLSNHFNKRSELQVIGLQSKIVALKEIT GRLTQEINRMFTRGILKGISKLG >gi|333608724|gb|AFDH01000009.1| GENE 70 67239 - 67736 253 165 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTKAKMIRVVNNMPTGSLGIVLTDGKPIVLPKPGSYKEVSFDNVLNIYTSCKLIQKGHLY IDNKEVRIEFGLEDGDQVDINALSREELGELVKESDAKHLETILAADTSDGTKEKIVLLA REQYKNESMDAKKVKVIETATGMSVTEEDLQSKPETTKSSMISKK >gi|333608724|gb|AFDH01000009.1| GENE 71 67788 - 68027 140 79 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MELPNSFTDETNSQKLLDDGYIYMAPVNADKPVKIVLEGNMHIRDKQEKDWSTTKEYYRK AGVSVLAVNNMALYENTSL >gi|333608724|gb|AFDH01000009.1| GENE 72 68360 - 68536 131 58 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MYPKSKTVSLKSGTLRMVKLLRHTLHLVLNSLVRSCTKVPLLLKQHQSVVQFMLSTKI >gi|333608724|gb|AFDH01000009.1| GENE 73 68850 - 68915 63 21 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MYNLAENWYSILLLTLLHILL >gi|333608724|gb|AFDH01000009.1| GENE 74 69297 - 69719 397 140 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSLEEMKIEKEKLEAQVATLTAQLNEANQAVTTLGKEKEMLTAQVDDLSKYKNDTLEKAE VDKINALIAEVKESLSEQELTLVNEVAEAKEFTKVQYKVNEICAQKYKETIRLNNSKGSN FFSVTKQKDLGNDELTKFNM >gi|333608724|gb|AFDH01000009.1| GENE 75 70322 - 70813 80 163 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MQSDVLMNAGIGEGALKGGNFSAGVLNVEIITNSLVKILGQIQSIWFNRKFKSFGNSQFQ FRMKFLGITSFNRDKVIAAFDGLLDKGGSLSHSIAARGMDVSNYIDIVAIEDALEYKDKF KPLQTSHTISGNDGGRPSEPDLSNDNTVKDKTNGGSMAPRTGQ >gi|333608724|gb|AFDH01000009.1| GENE 76 71839 - 72225 133 128 aa, chain - ## HITS:1 COG:no KEGG:BATR1942_07900 NR:ns ## KEGG: BATR1942_07900 # Name: not_defined # Def: hypothetical protein # Organism: B.atrophaeus # Pathway: not_defined # 1 96 476 563 563 87 52.0 2e-16 MFDALVEMLNLDLISFTEEYDMKGYLTLFESKQNADGLHESKEKSYKLSFDEELALKNID LTKEEAVNIYRYDNPSGGYRYALAPDKETKMHDDRAYCLAMLAWQLQQLRREHITGKKKT SKMVFLYN >gi|333608724|gb|AFDH01000009.1| GENE 77 73681 - 74025 74 114 aa, chain - ## HITS:1 COG:no KEGG:BATR1942_07895 NR:ns ## KEGG: BATR1942_07895 # Name: not_defined # Def: hypothetical protein # Organism: B.atrophaeus # Pathway: not_defined # 1 103 232 334 351 123 67.0 2e-27 MLALAKDNGISVNHNNNKSKGAGTLSGIIKQLHEKGIHAADINVYDIETCDGMRQVADIS NKSLMDQLMLNENDYTEMIKEQREMILKYEKDCSRLEEDNRNLHIKIKHFEDMN >gi|333608724|gb|AFDH01000009.1| GENE 78 74873 - 75850 132 325 aa, chain - ## HITS:1 COG:no KEGG:BSU21070 NR:ns ## KEGG: BSU21070 # Name: yonJ # Def: hypothetical protein # Organism: B.subtilis # Pathway: not_defined # 4 325 82 405 405 333 52.0 5e-90 MLHEEKKLEAQKEYKKIQAVKNELNKNLNKAARREVMWDMIKDSIEKIPVPKFQPIIYPP TRDKVGVLSFADIHFGKYFKSLKNEYSEDIARDRMSLLMGNTLEIIRQHGFEHIHIINAA DSIEGMTLRTSQLQSIQSGIIDQTIKFSKFIASWLNVLSQYVRITYHHVPSANHSEIRPF NSNRGEYPSEDLEKVIMNYVHDVLENNPRIEVPLYDKDYVKLDVFGYKLWALHGHQLRGK KNAIRDLSVLHREFIDYLYIAHFHHGGTLTVGEGLTNDIEIIQIPSVMGSDEYSDSLMTG AKAGANFSVFEKDKGRSISYSIKLN >gi|333608724|gb|AFDH01000009.1| GENE 79 76093 - 76371 258 92 aa, chain - ## HITS:1 COG:SA1305 KEGG:ns NR:ns ## COG: SA1305 COG0776 # Protein_GI_number: 15927054 # Func_class: L Replication, recombination and repair # Function: Bacterial nucleoid DNA-binding protein # Organism: Staphylococcus aureus N315 # 1 90 1 90 90 80 52.0 5e-16 MNKDQLVKRVAKELNMSNKNIESVVDAILETIVDVVAKGEEVALHGFGKFEIRSRAARKG FNPSTREEMQIDVSKCPGFTAGKNFKEAVKSK >gi|333608724|gb|AFDH01000009.1| GENE 80 76376 - 77119 182 247 aa, chain - ## HITS:1 COG:lin0080_1 KEGG:ns NR:ns ## COG: lin0080_1 COG3617 # Protein_GI_number: 16799158 # Func_class: K Transcription # Function: Prophage antirepressor # Organism: Listeria innocua # 6 124 4 121 129 95 43.0 6e-20 MSKDEIRIFEYFGKTVRTIIIENETWWVAKDICNILEHSDTNMAVKRLDKHEKGTNSIWT PGGKQELLTINESGLYSLIFNSRKTEAKRFKKWVTGEVLPSIRKTGQYSVNNTVQQYLAL SEEDRAIAYFSQVKKKKELEHQLELSAPKIQKYDEFLDADGYMTIGDAAKVLNIGRNKLF EFLRRIGILMNNNTPYQKYRNGIDKFKVIHTTRNKEPFSVTLLTPKGFDYIADKVREKFQ TFNFKGE >gi|333608724|gb|AFDH01000009.1| GENE 81 78404 - 79180 36 258 aa, chain - ## HITS:1 COG:no KEGG:GWCH70_2831 NR:ns ## KEGG: GWCH70_2831 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_WCH70 # Pathway: not_defined # 1 257 2 273 321 118 34.0 3e-25 MEKHKLISLLQSKDYERVYIHNEIFSELQNTNQFKSATNIAFAYCYYCLICYLYRYCKYG NEYWFTKETLIEVLGFASNNKTFDYLIKKNGLLDQLGLTETLSDFPIQSKVEDQFVSFQM YKDLNDNEIFALPHKYTIKKPIKGFSRYEDDVFDGTFYDISNTHLFSIHRFIDIISKPDL GTIGFYLFQYLLYSCAKFPNGYFVTLITLSETLSLSTSTIQKYINNLEKTGNIRIERPKH YLKEGEWKRYANTYFINY >gi|333608724|gb|AFDH01000009.1| GENE 82 79293 - 79907 87 204 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSELIIANKSSESLNYIIYIQNAISNTDIQLNETIRRKFPWVSIDLDEPVLVELQHVLIN IWVDLVRNGRADNTSTQLINLEILSRVTDDKVKAALEKLKASFLAWWNDPYIGGYNKLNY IDRNLLNKIYDRVKEKLDQSEATISLVIDVVYDMPIFDSIMNSRNYVVIAIAELPDMRLF HDSGYIDERLISKLVEKIYNFLKI >gi|333608724|gb|AFDH01000009.1| GENE 83 79971 - 80447 -131 158 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKLNVSAHLKVFLSLLFLTLLIPTISTPASASSVKGTCGSSALYDANGLYWSIHPNRPVA YTAFLEISVYKGASRSGSYVTSEYITTYGSGGASGSSGIFNPSSFFPELDPGAYYAELTG SVAFLDHETCTLGDGGSLYAGTKFYHYGGVDFKKPEEQ >gi|333608724|gb|AFDH01000009.1| GENE 84 81833 - 82051 174 72 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MQEWLKILLTAITTLVGVTGLGITLRDYLETRQMKKRILTYDEHYKLLQIIEKRKELQEK GIELPPLPRRIG >gi|333608724|gb|AFDH01000009.1| GENE 85 82168 - 82350 134 60 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTINKKAFTINLISLVLGITLLFIRNESDPNYLRMSMLVIGVFATIVGAYGIFKSLTSVK >gi|333608724|gb|AFDH01000009.1| GENE 86 82373 - 82531 115 52 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSKFTGICLAVVLFGIGMLIYAYFDTASGDIPMYIVGALCIITGAYGLLRGE >gi|333608724|gb|AFDH01000009.1| GENE 87 82566 - 82868 126 100 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKKAINHHKAHTNLIMAISNYDLDHTNVFFDDEDDLTVKERLLWIANVALGSMHLLYVVA KKYPVIKFTDGFENELNRLGSINAQLAIELKQHERIKQHL >gi|333608724|gb|AFDH01000009.1| GENE 88 83920 - 84111 66 63 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKLDMGKILDILKLTPLYLFPIVLASAAMLFLPVDILKQLGIDPFTVKYKTWIGLTFIIS FCF >gi|333608724|gb|AFDH01000009.1| GENE 89 84192 - 84305 57 37 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLHSNYTTKHTFEGELNETFFLTNFSILKIGEFIYFY >gi|333608724|gb|AFDH01000009.1| GENE 90 84739 - 84984 159 81 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MQSYEVVDLFENVCELIESIRGSQERSEKRFEQFQKELIAQLNRIEENDKITAAEAKSDI NFLAKEYGQLKLEMSRLNQAW >gi|333608724|gb|AFDH01000009.1| GENE 91 85060 - 85230 153 56 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MDQEIKGLLEKILTRLDSIEKSGKLEQAATKEDVAYLAAKIGQHDLELDRLNKRIR >gi|333608724|gb|AFDH01000009.1| GENE 92 85302 - 85691 108 129 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MDMAKELAMVENNQKEKEVRRYFIELESKYKAALQEIERLYSQLFDASNLITMNSAAKSI GIGRNKMFVDLRKRGIILKGSNVVKQQYIDRGLFVVKNVNKINKYKNKIIPTTFVTPKGL DYLAKLYIA >gi|333608724|gb|AFDH01000009.1| GENE 93 85835 - 85897 84 20 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSLYQFIVTKKVRVLLMVVI >gi|333608724|gb|AFDH01000009.1| GENE 94 86517 - 86720 90 67 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSGLGTKQQKKEVTQHYIQLTYTNKDNEQIDALFLVDRDKKYCDGVADHINKETGKIALV QKLQYEI >gi|333608724|gb|AFDH01000009.1| GENE 95 87162 - 87422 173 86 aa, chain - ## HITS:1 COG:no KEGG:Dtox_3714 NR:ns ## KEGG: Dtox_3714 # Name: not_defined # Def: putative transcriptional regulator, XRE family # Organism: D.acetoxidans # Pathway: not_defined # 1 68 1 64 70 62 44.0 5e-09 MFSYKPLKRLLVEKEMSKTEFMNYMGFSSSTTAKIWKNENVALSILDDICNKLECKISDV IEHIPSDDYIDEDGRYVLKIKDNVQK >gi|333608724|gb|AFDH01000009.1| GENE 96 87596 - 87691 104 31 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKNKFAIALFTNPIRPVNENDLRGSFKAKMA >gi|333608724|gb|AFDH01000009.1| GENE 97 88853 - 88936 64 27 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRIKLCNFNNDMSDRKNIVNKFYYFNM >gi|333608724|gb|AFDH01000009.1| GENE 98 89228 - 89719 -39 163 aa, chain + ## HITS:1 COG:no KEGG:Bsel_0552 NR:ns ## KEGG: Bsel_0552 # Name: not_defined # Def: metalloendopeptidase (EC:3.4.24.57) # Organism: B.selenitireducens # Pathway: not_defined # 1 151 257 407 771 214 68.0 1e-54 MTVMRWFIYNGLKEIYPHAKLTYGYIIKNTRIRHGLEKSHMADARCISGHPLAKSNDAVY TMKFVRKNNRQLHTATIGKGGRRKTNKAERFVLGFQLFDKVIYEGQECFIFGRRIRGYFD IRQLDGTKIHTSTSFKKLRKVEYASTLLIERRISDSSPTYSSA Prediction of potential genes in microbial genomes Time: Sun Jul 17 07:39:27 2011 Seq name: gi|333608660|gb|AFDH01000010.1| Paenibacillus sp. HGF7 contig00055, whole genome shotgun sequence Length of sequence - 64517 bp Number of predicted genes - 61, with homology - 49 Number of transcription units - 42, operones - 16 average op.length - 2.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) + TRNA 8 - 84 85.4 # Arg TCT 0 0 + Prom 335 - 394 6.2 1 1 Tu 1 . + CDS 467 - 2626 1578 ## COG0840 Methyl-accepting chemotaxis protein - Term 2884 - 2940 19.7 2 2 Tu 1 . - CDS 2961 - 5846 2625 ## COG0642 Signal transduction histidine kinase - Prom 6070 - 6129 4.1 - Term 6148 - 6188 6.2 3 3 Tu 1 . - CDS 6275 - 6355 148 ## - Prom 6406 - 6465 5.2 4 4 Op 1 . - CDS 6468 - 9350 2841 ## COG0553 Superfamily II DNA/RNA helicases, SNF2 family 5 4 Op 2 . - CDS 9347 - 10936 1107 ## BBR47_26420 hypothetical protein + Prom 11241 - 11300 5.7 6 5 Op 1 . + CDS 11358 - 11657 407 ## Pjdr2_0112 hypothetical protein 7 5 Op 2 . + CDS 11732 - 13531 1720 ## COG0514 Superfamily II DNA helicase - Term 13770 - 13810 5.7 8 6 Tu 1 . - CDS 13852 - 14007 130 ## - Prom 14036 - 14095 7.9 + Prom 14043 - 14102 7.1 9 7 Tu 1 . + CDS 14144 - 14329 60 ## + Term 14513 - 14554 -0.7 + Prom 14694 - 14753 6.6 10 8 Op 1 . + CDS 14887 - 16413 1150 ## COG4585 Signal transduction histidine kinase 11 8 Op 2 . + CDS 16434 - 16733 346 ## COG2154 Pterin-4a-carbinolamine dehydratase + Term 16764 - 16793 0.4 + Prom 16764 - 16823 4.2 12 9 Tu 1 . + CDS 16885 - 18270 1387 ## COG2041 Sulfite oxidase and related enzymes - Term 18301 - 18350 4.1 13 10 Tu 1 . - CDS 18512 - 19003 439 ## GYMC10_0091 GCN5-related N-acetyltransferase - Prom 19033 - 19092 5.2 - Term 19155 - 19205 1.5 14 11 Tu 1 . - CDS 19268 - 19711 342 ## COG1846 Transcriptional regulators - Prom 19832 - 19891 8.1 + Prom 19760 - 19819 5.5 15 12 Op 1 . + CDS 19956 - 20426 427 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Prom 20461 - 20520 3.3 16 12 Op 2 . + CDS 20554 - 21399 787 ## COG2897 Rhodanese-related sulfurtransferase + Term 21422 - 21468 12.1 17 13 Tu 1 . - CDS 21527 - 22606 428 ## COG0665 Glycine/D-amino acid oxidases (deaminating) - Prom 22629 - 22688 2.4 + Prom 22859 - 22918 4.1 18 14 Tu 1 . + CDS 22938 - 23519 215 ## COG1309 Transcriptional regulator + Prom 23528 - 23587 1.5 19 15 Tu 1 . + CDS 23833 - 24465 -277 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) 20 16 Tu 1 . - CDS 24582 - 24752 62 ## - Term 24850 - 24892 5.8 21 17 Tu 1 . - CDS 25090 - 25236 61 ## - Prom 25382 - 25441 3.3 + Prom 25549 - 25608 5.2 22 18 Tu 1 . + CDS 25775 - 27175 494 ## Mvan_4661 hypothetical protein + Term 27183 - 27234 17.0 + Prom 27197 - 27256 2.9 23 19 Op 1 . + CDS 27347 - 27829 386 ## GYMC10_3482 hypothetical protein 24 19 Op 2 . + CDS 27857 - 28285 289 ## + Term 28335 - 28363 2.3 - Term 28321 - 28353 5.6 25 20 Tu 1 . - CDS 28375 - 28950 264 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - Prom 29125 - 29184 5.5 + Prom 29081 - 29140 6.7 26 21 Op 1 1/0.667 + CDS 29184 - 29615 458 ## COG1846 Transcriptional regulators 27 21 Op 2 . + CDS 29685 - 30233 684 ## COG0431 Predicted flavoprotein + Term 30286 - 30332 9.5 + Prom 30318 - 30377 5.6 28 22 Op 1 . + CDS 30415 - 31032 651 ## BBR47_42780 transcriptional regulator 29 22 Op 2 . + CDS 31106 - 32290 1080 ## COG0477 Permeases of the major facilitator superfamily - Term 32254 - 32286 -1.0 30 23 Tu 1 . - CDS 32385 - 33197 545 ## COG2207 AraC-type DNA-binding domain-containing proteins - Prom 33275 - 33334 3.5 + Prom 33106 - 33165 3.6 31 24 Tu 1 . + CDS 33343 - 33792 605 ## BBR47_04650 hypothetical protein + Term 33867 - 33904 3.0 - Term 33855 - 33892 3.0 32 25 Op 1 . - CDS 34005 - 34226 221 ## BpOF4_13835 hypothetical protein 33 25 Op 2 . - CDS 34268 - 35659 1100 ## COG0415 Deoxyribodipyrimidine photolyase - Prom 35689 - 35748 2.4 34 26 Tu 1 . + CDS 35519 - 35812 180 ## + Term 35943 - 35986 -0.8 - Term 35715 - 35768 9.1 35 27 Tu 1 . - CDS 35809 - 36273 247 ## PROTEIN SUPPORTED gi|167856514|ref|ZP_02479226.1| 50S ribosomal protein L1 - Prom 36520 - 36579 7.1 - Term 36522 - 36576 11.1 36 28 Tu 1 . - CDS 36599 - 37189 737 ## - Prom 37215 - 37274 5.4 - Term 37245 - 37283 6.0 37 29 Op 1 . - CDS 37393 - 38214 769 ## Pjdr2_0117 hypothetical protein 38 29 Op 2 . - CDS 38224 - 40275 1905 ## COG0308 Aminopeptidase N - Prom 40320 - 40379 3.2 39 30 Op 1 . + CDS 40232 - 40360 73 ## 40 30 Op 2 . + CDS 40370 - 40876 600 ## PPSC2_c0111 ywhd + Term 40982 - 41020 5.2 - Term 41149 - 41204 17.1 41 31 Tu 1 . - CDS 41288 - 43366 2169 ## COG0744 Membrane carboxypeptidase (penicillin-binding protein) - Prom 43552 - 43611 4.4 + Prom 43511 - 43570 5.5 42 32 Op 1 2/0.333 + CDS 43742 - 44569 944 ## COG0421 Spermidine synthase 43 32 Op 2 1/0.667 + CDS 44604 - 45473 1063 ## COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family + Term 45510 - 45548 5.1 + Prom 45589 - 45648 3.5 44 33 Op 1 4/0.111 + CDS 45745 - 46161 324 ## COG4506 Uncharacterized protein conserved in bacteria 45 33 Op 2 . + CDS 46158 - 47831 2193 ## COG0018 Arginyl-tRNA synthetase 46 34 Tu 1 . - CDS 48141 - 49319 866 ## COG1404 Subtilisin-like serine proteases - Prom 49354 - 49413 2.1 + Prom 49575 - 49634 3.8 47 35 Tu 1 . + CDS 49690 - 50277 728 ## COG3343 DNA-directed RNA polymerase, delta subunit + Term 50285 - 50322 -0.9 + Prom 50331 - 50390 6.0 48 36 Tu 1 . + CDS 50579 - 52195 1776 ## COG0504 CTP synthase (UTP-ammonia lyase) + Prom 52205 - 52264 4.1 49 37 Op 1 . + CDS 52355 - 52735 389 ## COG0784 FOG: CheY-like receiver + Prom 52763 - 52822 4.8 50 37 Op 2 . + CDS 52892 - 53746 950 ## COG0191 Fructose/tagatose bisphosphate aldolase + Term 53767 - 53817 10.3 + Prom 54003 - 54062 5.0 51 38 Op 1 1/0.667 + CDS 54088 - 55347 1348 ## COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase + Prom 55349 - 55408 2.7 52 38 Op 2 . + CDS 55441 - 56733 1074 ## COG1158 Transcription termination factor 53 38 Op 3 . + CDS 56788 - 58050 1166 ## PPE_00140 hypothetical protein + Prom 58055 - 58114 3.5 54 39 Tu 1 . + CDS 58155 - 58352 341 ## PROTEIN SUPPORTED gi|167464107|ref|ZP_02329196.1| 50S ribosomal protein L31 + Prom 58354 - 58413 1.7 55 40 Tu 1 . + CDS 58453 - 58854 372 ## + Prom 59238 - 59297 4.8 56 41 Op 1 1/0.667 + CDS 59403 - 60851 1211 ## COG0642 Signal transduction histidine kinase 57 41 Op 2 30/0.000 + CDS 60938 - 62674 1290 ## COG2812 DNA polymerase III, gamma/tau subunits 58 41 Op 3 23/0.000 + CDS 62695 - 63021 217 ## PROTEIN SUPPORTED gi|149916415|ref|ZP_01904934.1| 30S ribosomal protein S21 + Term 63022 - 63064 3.6 59 41 Op 4 . + CDS 63084 - 63680 547 ## COG0353 Recombinational DNA repair protein (RecF pathway) + Term 63733 - 63766 2.1 + Prom 63729 - 63788 3.7 60 42 Op 1 . + CDS 63879 - 64127 320 ## 61 42 Op 2 . + CDS 64124 - 64387 190 ## Predicted protein(s) >gi|333608660|gb|AFDH01000010.1| GENE 1 467 - 2626 1578 719 aa, chain + ## HITS:1 COG:BS_tlpB KEGG:ns NR:ns ## COG: BS_tlpB COG0840 # Protein_GI_number: 16080175 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Methyl-accepting chemotaxis protein # Organism: Bacillus subtilis # 178 673 176 661 662 216 28.0 9e-56 MKKQMITKSFKGWNRNSLKVKIPLLLLILALVPLLVSEYFLSSQFTSVLRKSIEENQVKI TTYTADYISSTLVQKVSTVQSVIQNHTEIGTQTEAQKIAILKTMSENDTEVKIALFADKD GQAIDQNGKKSSLANDETFKSVKDTKKRVVSDIIKDSSSNQYSLKVSAPVLGTDGQFAGM LQTAINPSRMISQVNKVKIGETGYAYLMSKEGIYMVHPQVDRIGKPLSDIATSERLELYK KTVLVKEQGQVAYKEKDNTNKVAAYEEIKVPGWRIVVTGNSDEIYSQVDQVNFVAKIIVL VSAVVVVAAAIWLSTFILKPLLGISAMMKRIAGGDLSRRLKVQSQDEMGEVQQNINEMLN SFSALLQKLSMAIEHMAASSQQLSAIATQSADVSQNVNQTVLVMVKGAETQFETAEQTTE AMNEMAAGVTKIADSASTVSEVAQGAVQRVNQGSRDMQDAIHQIQQASEAVEATSLTIKA LEESSARIHQVVGFISEIAKQTNLLALNASIEAARAGEHGRGFAVVAQEVKNLAEQTSGA TVQINDTIKQVLSATQQAAASMSHGKAEVDRGVEQVRNTDRVFEDILETVSSINGQIQEV SAAAQQISAGTEEVAASMQETVQISRDSLGKMNGMSRSTEEQHAGMKEIVISASELTRLA SELQELSGKFTVERNAAADNETDDKEVRNKKIKQPKQKRQKPDKPVKPAKKGKVDKGNT >gi|333608660|gb|AFDH01000010.1| GENE 2 2961 - 5846 2625 961 aa, chain - ## HITS:1 COG:BH3156 KEGG:ns NR:ns ## COG: BH3156 COG0642 # Protein_GI_number: 15615718 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Bacillus halodurans # 436 781 239 579 589 171 30.0 7e-42 MKFNRSRLSLSYVIAIVLLLALVGTSSYISSLNMERQSDAVIEDAIPVISAANNLLQDLL NQETGIRGYLISSDPKYLEPYENGKAALQKDLEVIHTLESGHNDLRILIQTQVNPHIQKM LAFYTSQIELVKTGKVQEAQGRINIGKQYMDQYRTLHLSILDVLNKISESSHDSIKKAGS VSRMIILSGGILGILIGIWSGLIQLRASRAESQLRKSEETYRFMAESLEAQNEEIIAQQE EQQITLAKLSDRERELELISNYQEKLTGFTELKQFLQHSIPALLDSVSYDAALVVLKSRE AEHYEVLFSSGYPRSFASKAQSELYGASQRVFDEGCAFVQKREATEAERGFHDGISVAVD HYFPLQDDQQQVIGFLLLTNFHGFDRHEEKERLTLGLIRQFDLAFYAQIMNDERRKQAAH LEELNDQLVLEKQYIESQRDLIEGILEAAHEGMMMCDKHGKILIANNQMHKFFHLDEQIG HDFVDSCQEIAAASSGFIGVSQSIKALFDGDINQLNERFTFMNGEEPQFTEIYATSVGEN DSDESGYLFVFRDRTEEERIDAMKNEFVSIVSHELRTPLASVLGFIEILIHRELPREKQQ KYLDTIFKEATRLANLINDFLDLQRMESGRQVYHFAPVDTKELVYDIVEKWQDKQNHDIV VSVLSPAEVWVRGDSDRLRQVVQNLLSNAIKYSPGAERVDLQIRESGGSVFIDVTDYGLG IPEEAKEHLFSKFYRVDNSDRRQIGGTGLGLAIVKEIVEGHQGKLTFRSQMGKGSTFTVE LVPFEMVSLNNKIVIFEDDDNLAKLIQVALAKLQLPSVQLRSAEEGILSLKRKTTEAPLL FIVDIHLEGSLTGWDFISELYHHPVYNRTPVIVSTALEPPLDYHEKDIEKFMRKPFTMER LIQVAQDLLSNRDKPSYVFPSQDRNLITSSLARNGIKVHDVRVNADTIEFEIETEDEEKE T >gi|333608660|gb|AFDH01000010.1| GENE 3 6275 - 6355 148 26 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MEVKDALTLMISFASLVVLILSQKKK >gi|333608660|gb|AFDH01000010.1| GENE 4 6468 - 9350 2841 960 aa, chain - ## HITS:1 COG:BS_ywqA KEGG:ns NR:ns ## COG: BS_ywqA COG0553 # Protein_GI_number: 16080681 # Func_class: K Transcription; L Replication, recombination and repair # Function: Superfamily II DNA/RNA helicases, SNF2 family # Organism: Bacillus subtilis # 1 953 1 917 922 785 44.0 0 MIETSPLTVHAVWMPSGAFFVWGTRENGGIWDAQDLKGLLFAWHAPSFYGTFIETTEWGH REGLSLPALTALDFFGDPHTVKHLSIRWDTDTTNLRKLAPEVKEALAAGRFVPDYEQWKT GTLSWKLQLEGEAAASVTSQAELWLDQLIPAWIEADGSRKAALRRLEEAHPLLRLGTRPA DTWLDEEDWLVSIGWKHDPTPFRASLQLMEPEGDPDWRLQILLQDRSDDTVLRAVTPAGE PLEGELALPESWIADLGRVPRDVGRWLRLLPWLNAADEGEPPQLRTRLSDEEAWRFLAEG SVRLVEAGFAVMLPAWWERARKLRPKLQAKLKNSLGGGGGESMFGLTQLMQFDWRVAIDD FELSEEEFLQLLEEKRKLIRIRGRWVQLDPQFLRQAEELLARADRQQGLTLREVLELQLL GGGTGGEPEGPADEAADPDNRPPAVEIELTGQLRRLFQQLTRTAELPRIDTPASFLGTLR PYQLEGSTWLLFLRRFGLGACLADDMGLGKTIQYITYLLQVKETEAPEAPSLLICPTSVI GNWQMELRRFAPNLRVHIHYGPQRAKGSFFPESVESADLVITSYTLSHLDEEELREVSWS SICLDEAQNVKNPYTKQAAAIRSFSGLHRIALTGTPMENRLTELWSIFDFLNPGYLGTLT QFTRRFVTPIEKSRDSGLISGVQRLVRPFLMRRIKKDPAIQLDLPEKNESKTFVTLTAEQ GTLYEHYIRDLFEKVDAMSPMERRGHILAALTKLKQICNHPALIMREGPRTDWRNRSGKV ERLLDMVQELRQQGDKCLIFTQFVETGHLLQEILQSELSESVSFLHGGTPRQTRDAMIAR FQNAELPLEEQFSVFLLSLKAGGTGLNLTAANHVFHFDRWWNPAVENQATDRAFRIGQTR DVQVHKFVTLGTLEEKIDEMIERKLGLSEQIVGSGENWITELSTDELRDLLSLRMEWMNG >gi|333608660|gb|AFDH01000010.1| GENE 5 9347 - 10936 1107 529 aa, chain - ## HITS:1 COG:no KEGG:BBR47_26420 NR:ns ## KEGG: BBR47_26420 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 1 527 1 532 534 224 25.0 7e-57 MLELQIPKNRMNYLIKQMQTHMDPEDMERGWMFHHKGRVSGVELVGGTVVHASVRGNDRY HTTIDLESFSAGDCTCSFDKPCRHMAAVIFALYVPHGRPELLVQELKRAMTTKRKPAKNA DRESKRRTSEPVPGGSPEDWHRFFEAQYHGFSISHQYSFDLFVTSAFERFQAYASGWPDG IRLLYDLHVTFFVMHRMEQFFGDTKSSYLSGYHESNATTAAADCLSRLDRLLASPALPVS VKEHPKRWTEALNRLASLALQGKEGPNDWLYAYRAVWWALPKKAEWIKREKERLDKQLQE REEGRRNRKQDVLLVARAHFDLMENSPDAAFLRLEALHQRRARDFILYMRRCHERAEWNT LLSWLRWLAPTMQSAAQDDFRLLCQYWTDAAKHANADDEWVRIMETLLPRSYYVYTGYLL QTKRYRQWVDLQIANRIGPQNLYALELRSVEESDPSLLLPLYHQAVERSVLEKNRTSYKT AVRLLKKLHGYYTTLGRKREWETYINRLSDHFVRLRAFQEELEKGSWLP >gi|333608660|gb|AFDH01000010.1| GENE 6 11358 - 11657 407 99 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_0112 NR:ns ## KEGG: Pjdr2_0112 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 1 97 1 97 97 93 41.0 3e-18 MGIKFGREYEDIIRDLMNGLGHVDGFYGFFEMSEADWHELPEEDRQECLRTLADDVFYGL GSEPLLQIADAKVRYMKDRHLIQIDHDDQVVTIVRLTSA >gi|333608660|gb|AFDH01000010.1| GENE 7 11732 - 13531 1720 599 aa, chain + ## HITS:1 COG:CAC2687 KEGG:ns NR:ns ## COG: CAC2687 COG0514 # Protein_GI_number: 15895945 # Func_class: L Replication, recombination and repair # Function: Superfamily II DNA helicase # Organism: Clostridium acetobutylicum # 8 591 8 591 714 702 56.0 0 MLAKAQELLQQYYGYPEFREGQKHIISALLEGRDTLGIMPTGGGKSICYQIPALMMEGVT LVVSPLISLMKDQVDALHTVGIPATFLNSTLEAGEAGRRIREAMQGKYKLLYIAPERLES DWFRQWMHSMNISFVAIDEAHCVSQWGHDFRPSYVNIAPFVQDLPSRPLVAAFTATATTE VTQDIARLLELDDPEVVVTGFGRSNLELSVLRGVNKRDFVFDYAKAHTHQPGIVYAATRK EVDELYEQLRRKGLAAGHYHAGLSDEERARNQEAFLYDDVRVMVATNAFGMGIDKSNVRY VIHYNMPKNMEAYYQEAGRAGRDGDPSECMLLFSAQDILTQKFLIEQNQLSQDRKSNEYK KLQTMIDYCHTPRCLQNYILQYFGDEGELVPCGNCSSCKDDRETVDITVEAQKIFSCVRR MQERFGISMVAGVLKGSRNKKVLQYKFDNLPTYGIMKDRTEKEIADLINVLIAEGYMGLS EGQYPVVRLQAPAVEVLQGRVQVFQKVTPSQPLESAVDNMLFEQLRLLRRDMAAKEKVPP YIIFNDSTLREMSERCPTTEAQMLKIKGVGEVKFRNYGLPFLELLQEYVREQEAYAGEF >gi|333608660|gb|AFDH01000010.1| GENE 8 13852 - 14007 130 51 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MDQTLILWSPELKKEIRSEKLKNNNSTARLSIEEILKHQLEKNKIYKLAWC >gi|333608660|gb|AFDH01000010.1| GENE 9 14144 - 14329 60 61 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MIYTNPYLGIYLKENSEKKWSVDSFDPLGVGKYYDLKMGMLYNKSTARIRWIIQSSDYGE I >gi|333608660|gb|AFDH01000010.1| GENE 10 14887 - 16413 1150 508 aa, chain + ## HITS:1 COG:BS_comP KEGG:ns NR:ns ## COG: BS_comP COG4585 # Protein_GI_number: 16080220 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Bacillus subtilis # 1 500 270 767 769 150 25.0 5e-36 MLKTIWYSLFISFAPFALLSFLPALIIQRELVHSFYTSWFVFIFPVSFAYLILSKKLYDL DLYMRRILFSATISIVPSVITISCITFIFHRHISWIEITYIFTVILFIFSIFAYSMEYFT TKLEKFMFPRKYFLQQSLKKISKALGTITNFNALKEIILNDIVNTLDIHGGAIVFVEKEG IQVITAGDIDEEDVKTSMENGVYKGDKYTAFEINRHEEYRSFLVVTGKKSNTHLGQEDRH WINLIVTYLSASLENVYLIRKLTLKMYELMANIPNEEATPEFVWLRKTMYDIQEKERIRI AMDLHDTTMQDLFLLKRRLYPILQRFPKMTDEYGQLTGILTHIDLINENLRQSCFELNPY VLQKTGLVGSIRKLVDVESSYSEFQVNFIADCTAQIELLEVERKKHLFRVIQELLNNAKK HSQAEHVTIRLVEENSSISLLYEDDGIGFDRQVKEMNRKNRIISGAGIGLDQMQGRVLLM NGEFYMDTERGKGVQIEIRIPFLEGISA >gi|333608660|gb|AFDH01000010.1| GENE 11 16434 - 16733 346 99 aa, chain + ## HITS:1 COG:SSO2187 KEGG:ns NR:ns ## COG: SSO2187 COG2154 # Protein_GI_number: 15898965 # Func_class: H Coenzyme transport and metabolism # Function: Pterin-4a-carbinolamine dehydratase # Organism: Sulfolobus solfataricus # 19 93 31 106 114 70 42.0 6e-13 MAAANKLSYDQVAVKLAGLNGWNLRDERTIEKTYECRDFKTAIDFVRRVADVAESLKHHP FIKVDDRRVTMQLSTHDAGGLTDLDFTSAVQYDGVLPVA >gi|333608660|gb|AFDH01000010.1| GENE 12 16885 - 18270 1387 461 aa, chain + ## HITS:1 COG:SSO3201 KEGG:ns NR:ns ## COG: SSO3201 COG2041 # Protein_GI_number: 15899903 # Func_class: R General function prediction only # Function: Sulfite oxidase and related enzymes # Organism: Sulfolobus solfataricus # 287 448 15 175 199 140 45.0 4e-33 MERKNNWLSAGFGKKLNRLHAWNAWVTLVLALTGIVLSIGWIRGDLGALRVVLKQGHIWL GVFSILLLALYVPLLPKHLGQLRKRRKAGQQGNLAGVLVFTAGWIVSGVILWQFRSLPPV WSNTALFIHDAFTWVGVPYLLYHSVTRSRWVKKRSAELPASASASSPPARAAEAARPQAD ARQPILRADTGAVFRDETRDAGGAATQASAWSESLGRRMTRGAFLKLGAAAALAVVIGPS FVRWARGNLFGGGGLEEAVRADANRMLPAPVPLAESSPPVGGGAKGDFRIYTVTEIPAFS SDNWAFSVSGMVDKPLRFTWEELQQVERLVQVSDFHCVTGWSVNSVTWEGIRLSELLGRA GVQPGAGFVKFISGDGVYTDCLSLEQARMDEVLVALLMDGKPIPQQLGGPVRLIVPSMYA YKSVKWLQSIELIRDEHIGYWEVRGYEKDAWVPASRLKRGV >gi|333608660|gb|AFDH01000010.1| GENE 13 18512 - 19003 439 163 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_0091 NR:ns ## KEGG: GYMC10_0091 # Name: not_defined # Def: GCN5-related N-acetyltransferase # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 14 158 15 159 166 186 57.0 3e-46 MTLATSWRVRPFTETDGKAICAWSYPAPYSVYNWPSWEELSARAEEFADPDIREKQYAAI VDERDELCGFAQFFPLTGVTRLGLGIRPDLCGQGLGPSYVECLVAEARRRNPGNEIDLEV LVRNERAIKAYIRAGFAVTDTYERMTPTGMAMMHCMVHGAEPA >gi|333608660|gb|AFDH01000010.1| GENE 14 19268 - 19711 342 147 aa, chain - ## HITS:1 COG:BS_ypoP KEGG:ns NR:ns ## COG: BS_ypoP COG1846 # Protein_GI_number: 16079229 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 4 135 6 137 141 72 28.0 2e-13 MPDQGYLEMEKSFRQLLRKMSNEWTKYVDRSFSKSQFLILETLVKEGPQKVSSLAEALFI TAGAITGMSDKLIAGGYAERIRTEEDRRVVFLAVTEKGREMVKVMSEYRLGIIRRMMQGL TDEDMTHMSRIFAHMIDNLDKGEETAD >gi|333608660|gb|AFDH01000010.1| GENE 15 19956 - 20426 427 156 aa, chain + ## HITS:1 COG:BS_yhfO KEGG:ns NR:ns ## COG: BS_yhfO COG0454 # Protein_GI_number: 16078095 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Bacillus subtilis # 4 141 1 136 149 76 32.0 2e-14 MSRVEIREAELNDRDALRGLMNTYIYDFYQYPRPEEEKLENLLDVLLEKKAGTQFVAVYE GELVGFATLYFTYSTLRTGKVVIMNDLFVTEKCRIQGVGTKLFRACNQYAAYNGYVAMLW ETSKANENAQKFYEKMGGEREEWYPYSIKPVIGVGD >gi|333608660|gb|AFDH01000010.1| GENE 16 20554 - 21399 787 281 aa, chain + ## HITS:1 COG:BH1708 KEGG:ns NR:ns ## COG: BH1708 COG2897 # Protein_GI_number: 15614271 # Func_class: P Inorganic ion transport and metabolism # Function: Rhodanese-related sulfurtransferase # Organism: Bacillus halodurans # 5 278 6 276 283 282 51.0 4e-76 MRNIVSLEWLYEHLQDPDLLIADCRFALGEPWSGRQDYSIDHIPGAFYVDLEEDMSGEKR EHGGRHPLPDLGAFSMRASALGVDASKTVVAYDDQGGAMAARLWWMLRFLGHERVYVLDR GYSQWKAAGYPVTAEAPQASPATFSPKVQRHMLASMDEVKAKLGEKGTVLIDSREGARYR GEQEAIDPVAGHIPGARNCFWKDALDAEGSWRSAEEQKERFRGLENAEELIVYCGSGVSA CPNVLALEEAGIPGVKLYAGSWSDWISYEENPIAVGEEEKA >gi|333608660|gb|AFDH01000010.1| GENE 17 21527 - 22606 428 359 aa, chain - ## HITS:1 COG:mll5352 KEGG:ns NR:ns ## COG: mll5352 COG0665 # Protein_GI_number: 13474462 # Func_class: E Amino acid transport and metabolism # Function: Glycine/D-amino acid oxidases (deaminating) # Organism: Mesorhizobium loti # 2 346 3 353 355 212 34.0 1e-54 MSKQKIVIIGAGIVGASVAYHLAKRNQDVTVIERHSAAAREVTEKSFAWIHTTHSVAPEY WHLYDAACEEYHALQQDLSELQIHWHGALTWDNPPLREQLRFQKLNREQLEALEPNLKEY PDEAMFVSEEGAVDPIGLTDLLLSKAREYGAKVQFSTNVTQLQQENSCLVGVHTSKGFLE SDVVVLAAGTGIPELCNPVGCPVPVTPSPSILIRMKTANKLIRTLISNAQFEARQLTDQT LLAAEDYIDESEENGPEAVGKRAFETLRRSLKGGNQLELESIRVGMRPMPEDGYPIVGFH DHIKGLYLTVMHSAITLAPLIARLAASEIINRESRSELVPCRLSRFKDHMRDDPAVSRA >gi|333608660|gb|AFDH01000010.1| GENE 18 22938 - 23519 215 193 aa, chain + ## HITS:1 COG:FN0473 KEGG:ns NR:ns ## COG: FN0473 COG1309 # Protein_GI_number: 19703808 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Fusobacterium nucleatum # 1 192 1 189 189 87 27.0 2e-17 MVQVLKEELRQAVIKSAQVEFAQFGYAGASMKRIAAQTGISVGNLYRYYKDKEDLFDSVI SPVYHELETLISNHHAQPHGQGNIFELIVEALTNIVIEYRTPLLILIDGARGTRNENAVQ KFHQMMADNVAVHLADYSNKGGEGLKPQVAWPVSVAFLQGYFEIIRLHEGTEDCKRMVRQ YLLVWFQGLQAIL >gi|333608660|gb|AFDH01000010.1| GENE 19 23833 - 24465 -277 210 aa, chain + ## HITS:1 COG:BS_ycgS KEGG:ns NR:ns ## COG: BS_ycgS COG0596 # Protein_GI_number: 16077395 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Bacillus subtilis # 1 200 85 284 284 204 48.0 1e-52 MQIPQVNVIAMSAGGPSGIHLASRFPNRVRSLVLQSAVTQCWLSPDDKLYKFAQFLFRPP IEKYVWTMIRLLNKLFPSFLLSSMIPSFSKLPKEKVLPQINDADRRKFKSIIAQQRSGHG FLIDVVHTGKDATSALAAIKCPTLIMHSIHDASVSVDHARHASRLIPNSRLCELDLWGHL IWLGTGADEMNRQLFSFLEAANVHQQSANS >gi|333608660|gb|AFDH01000010.1| GENE 20 24582 - 24752 62 56 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MDEVVVSHGYDRDFGNLVKWGLEREDYGITVDAKMRTSQSGIFGAVTSSPTAAARH >gi|333608660|gb|AFDH01000010.1| GENE 21 25090 - 25236 61 48 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFEVSLALPKYYLESSAMGKRFSTHSKVSNLLVLSKIMRLRSRRKIEM >gi|333608660|gb|AFDH01000010.1| GENE 22 25775 - 27175 494 466 aa, chain + ## HITS:1 COG:no KEGG:Mvan_4661 NR:ns ## KEGG: Mvan_4661 # Name: not_defined # Def: hypothetical protein # Organism: M.vanbaalenii # Pathway: not_defined # 1 454 1 442 449 208 32.0 4e-52 MIIVQLSYFGLLFWFGLYMVNRDVRNIRLLLAGLGVIVCSLGFGVTLLMPYSQGDPFMAP PLSTVRDICFYLPLVLWQGAVLSTVSREEGERNVLWQLWKYVLTGLTVGIVIWLAFAANP DIYFVSSKAAVYVFFILVTVLSIWGVVSGGTKRSFPFYVFNYVPLFVFACMTALNLFFPE VVWNKWTLVANSAGMLLFGAYTIVKEIREQGESWLPDLFRSLDYSVFFTLIFSGQVALVI LLGTGTGFDFATLLLLMVSIMVSIAFQVFVYPIRALLDNIALMTFPKLRTERSKLRLVES VQVRIDGDANPEEMDNEEFYRHIRRATSNLGNLERLAASPLAQLALIDERLRKSGAADGV VERANELKSLLIESILQMKPRPDEAFGTTDEWKFYNALYFPYVAGIKPYSVRYSNHQLDA PSKEALEWFRTCVPERTCYNWQNAGARLIATSLKEKNALLRRNKNE >gi|333608660|gb|AFDH01000010.1| GENE 23 27347 - 27829 386 160 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_3482 NR:ns ## KEGG: GYMC10_3482 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 151 1 151 155 161 52.0 8e-39 MSQASIQTAKTAHQLVIGSIQAIQEEIYDITPAGFNNTVRWNAGHIVTMLNWFLSAGPAL NTKLPQSYAGLFMTGTKPSDWTVTPPSKSELIQFLSAQLDDLSNLDIESLNVPLSAPFEM GPLRFETAGELFNFAFIHEAVHLGIISSLVKAVQAVQADQ >gi|333608660|gb|AFDH01000010.1| GENE 24 27857 - 28285 289 142 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKPNEAITPTGETLIRKVLLTNAVSSGIFGLLLLAFPGYVAEWTGLESRTALVETAVFLL LFVAFLVWTVSRSMVPPSAVLVIAVIDILWVAGSVLLLGDKGTTGKMTVFGITVILLVAA VVGVFAIFEVLYYGRNRYFRRN >gi|333608660|gb|AFDH01000010.1| GENE 25 28375 - 28950 264 191 aa, chain - ## HITS:1 COG:PA4114 KEGG:ns NR:ns ## COG: PA4114 COG0454 # Protein_GI_number: 15599309 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Pseudomonas aeruginosa # 47 174 2 130 169 80 31.0 2e-15 MNRNKNTKSLRSDEDMEDPNSPERAVELKEKLIGACDRIGERYRPTVELKPVDENNWYDC TELVVTDEQKNVFPVPVVYWLAESAYCGFTPLAMYNGEQLIGFAVYAVDPDDGSYWIMAY MIDHKFQHKGLGRSGMKELVRYIHEKHGCDKIVLGHRAENERASHLYASLGFEEVDRDGI EIIRELTLSKP >gi|333608660|gb|AFDH01000010.1| GENE 26 29184 - 29615 458 143 aa, chain + ## HITS:1 COG:RSc3139 KEGG:ns NR:ns ## COG: RSc3139 COG1846 # Protein_GI_number: 17547858 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Ralstonia solanacearum # 4 139 23 158 159 77 31.0 6e-15 MERDMEEHIGLMIHMADLEITSYLKKRLAPMQLAPEQHLVIALLMRQEGLSQNEIAERLS KDKSGITRMLASLESKGFIRRTPSASDRRSIEVYLTDEGRALKANVEEISSHMKQHLRAG FTAEETAELKRLLTKVRENVRKW >gi|333608660|gb|AFDH01000010.1| GENE 27 29685 - 30233 684 182 aa, chain + ## HITS:1 COG:SP1472_1 KEGG:ns NR:ns ## COG: SP1472_1 COG0431 # Protein_GI_number: 15901322 # Func_class: R General function prediction only # Function: Predicted flavoprotein # Organism: Streptococcus pneumoniae TIGR4 # 1 181 1 181 187 132 37.0 5e-31 MKIAAVIGSNRKNSYNLKLAEYVQKTFKDRLDVEIVRVNDLPFYNEDIELTPDQSVLDFR GKIAGADAVLWVTPEYNYSIPGVLKNALDWLSRGDRVMIGKPSWIMGASMGTLGTVRAQE NLRDILFSPGISSVLLPGNEVYVGLVHEKIDKDGNLHHAPTIEFLNVVVNNFMNWHGKLY KN >gi|333608660|gb|AFDH01000010.1| GENE 28 30415 - 31032 651 205 aa, chain + ## HITS:1 COG:no KEGG:BBR47_42780 NR:ns ## KEGG: BBR47_42780 # Name: not_defined # Def: transcriptional regulator # Organism: B.brevis # Pathway: not_defined # 3 204 2 200 200 149 44.0 1e-34 MEKQNDIMVLTNLEQLKSLSDPLRIEILCLLVEEARSGQQLSQQMGESRSKIHYHLQDLE KNGLIRLVEENRKGNMTQKLYQAVAKSFIPSTELLSFHNEYGESRRLMTLSTLDRAKSRA LAAPESAFLTDSEDHRKWHRIASQTEVNIPKEKFKKWVAKYHELIQELNRMAEEEVSEEE METFYLMTVAFQIDEPYFKGEKEDE >gi|333608660|gb|AFDH01000010.1| GENE 29 31106 - 32290 1080 394 aa, chain + ## HITS:1 COG:BH0293 KEGG:ns NR:ns ## COG: BH0293 COG0477 # Protein_GI_number: 15612856 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus halodurans # 1 391 28 415 418 258 41.0 2e-68 MLWLSTIFSGLALNMFYFAEAWYVVNVLNMEASLGVIYLIGTLPRVLFMAIGGVLADRIS PSKIMFVSTITKSALLAVLVLVLVEGGGLGLGALTAFALLFGILDAFFWPASGSIVPSIV SKEELTRANSIIQTTNQSTSIFGPMISGFVIVALRYEGIFGLITVLLALGALFALLVRVR KSPSPDAKAERIPMLTSVKEGIGYVRQAPVLKAFVLKTLFLNLFFTGPFAIGIPVFVKHV LHGETLDFSMLQSFLAGGMLISSIVLGILNLKRRRGLISVLAQLGLSFSFLALSMAGTLW TGAVFAACMGISMGISNICATSVIQNHADKAYIGRVMSIQTMSSMGLTPISYGLTSLLLS VGVGIQNIVMGGALLLLAFTFWLIVKIPSLRKAD >gi|333608660|gb|AFDH01000010.1| GENE 30 32385 - 33197 545 270 aa, chain - ## HITS:1 COG:CC2573 KEGG:ns NR:ns ## COG: CC2573 COG2207 # Protein_GI_number: 16126811 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Caulobacter vibrioides # 24 266 2 259 270 81 24.0 2e-15 MKPEENPVIVNKGILNYEKGRQKFNISRRLPAPELAFFIRHYWLIHWDLRGLPSHTQEVL QPPCFNLVFEKDNTRIYGTNKGKLSQLLEGKGEVFGVLFRPGGFYPFYRQPASELVNRSL PFQKVFGRSCLPLEEALFSEPDEEAKVRFVDDFFIRERPPADEQIEIVNSVIDYIAGHRE INRVEDVGARFGISARTMQRMFSQYVGVSPKWVIKRYRLQDAAVSADAGESPDWSKLAVD LGYYDQAHLIKDFKTVIGKSPEEYVRGKQG >gi|333608660|gb|AFDH01000010.1| GENE 31 33343 - 33792 605 149 aa, chain + ## HITS:1 COG:no KEGG:BBR47_04650 NR:ns ## KEGG: BBR47_04650 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 1 149 1 149 149 190 55.0 2e-47 MDLIYHFYIDGSPEQVWDVFVTPEKTRKIFFDCVIDSSYVPGESIRYIGPGNDGEQTVHI YGEVLEYEPNRILSYTEHPGPSYYPNHAEITTRVTIKLEPVGGCTKLTLINDEWVDNHPS YEKADPAWWMLLSAIKTFVETGKKLDLGW >gi|333608660|gb|AFDH01000010.1| GENE 32 34005 - 34226 221 73 aa, chain - ## HITS:1 COG:no KEGG:BpOF4_13835 NR:ns ## KEGG: BpOF4_13835 # Name: not_defined # Def: hypothetical protein # Organism: B.pseudofirmus # Pathway: not_defined # 1 70 1 71 72 64 42.0 2e-09 MENPMVKCSIANCEYWEQGNNCSAEVIMIEVNAHSNKPQPQERDGLPYDSGHQDSAEGIT DTCCQTFEERHHH >gi|333608660|gb|AFDH01000010.1| GENE 33 34268 - 35659 1100 463 aa, chain - ## HITS:1 COG:SPy1505 KEGG:ns NR:ns ## COG: SPy1505 COG0415 # Protein_GI_number: 15675407 # Func_class: L Replication, recombination and repair # Function: Deoxyribodipyrimidine photolyase # Organism: Streptococcus pyogenes M1 GAS # 7 418 8 422 469 222 35.0 1e-57 MILFIHRKDLRIDDLTAFDYIHSLGRPSLHILILDPFLLRDGRDREHSGVNFLRHVSRLI REYREAGAHLEVLAGEPHAVVDQLLAELPIEEIVLHGDVTPYALVRDRKLKVSASARGVP VTTLIDHTLADFGDFQHFAERSAPYQVFTPFYKKWNAYMHLFFRPSSAVTVRDLQTRPLP DREAWSARFPLPLDPEAAGTAPDPAQTLSGFLEGGLRAYEAQRDRYAFETTSGISRHLNT GALSVRRAYEAALGSERHEAWTRQLAWRDFYLYQAVYNPDFFVYEKKFDFSGLEDTLFER WCRGQTGIPVVDAAMAELNATGHMPNRLRMVTAMFLTKNLRCPFTLGERYFRRKLADYDN VLNRGGWLWSASLGFDASPYFRVMNPVTQSETHDPTGMYIRRWLPRLAHLSDKEIHKPQA DAIVDLKSSRAAAIEIYKHMLAEAKPDAGAGPAGFSPDDSPPV >gi|333608660|gb|AFDH01000010.1| GENE 34 35519 - 35812 180 97 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFPVPAVAQKEGVQNQDVQAWTPQAVNVIKRSEVVNPQIFAMNKKDHNEGTLLTFSSNFI VTGNPAQMKRSPASQAATWITGLPFGYMLRSITSASY >gi|333608660|gb|AFDH01000010.1| GENE 35 35809 - 36273 247 154 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|167856514|ref|ZP_02479226.1| 50S ribosomal protein L1 [Haemophilus parasuis 29755] # 37 142 72 174 175 99 45 3e-20 MKKVLLFVLSLTLFLSVEIGSASAKSTLSSTIDGLVGTPYKYSGTSTSGFDCSGFTSYVF DRFGIDLARTSKAQNGQGSSVAKSDLRPGDLVFFNTDGKGISHVGIYIGNNKFAHSATNK GVTKSDLSESYYAKRYVSARRVIGDDLFNKITAD >gi|333608660|gb|AFDH01000010.1| GENE 36 36599 - 37189 737 196 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MISPRTSTVVAAVIGLCVAAGSFFYGQSDVKAKEVVAIGHDVRISNQAFDKMKAEVDLAF QMQGAQNNLTNDQLLDLMLKDELFVRYGQKRGVKVKEAEVKQAIDQQRKALEAAGPEAAQ LKEMLYKSAGLTEATYWTDPKTVNQYAKYLLQQKTIEYLVKKGELKTQEDLNALQEKLLA ETKPGLRVKFPDQPKT >gi|333608660|gb|AFDH01000010.1| GENE 37 37393 - 38214 769 273 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_0117 NR:ns ## KEGG: Pjdr2_0117 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 1 270 1 270 273 171 39.0 3e-41 MLRYLRQGLTAALKQPFAVCVLYVYQFAWGILLYKWVQSIIVPLLHRYPAGDQPQSAVHL FLMESQFRLVKTDLIQPYLEWLLILLAVRMLISPMLNAGVLYSLEHRQMNAGYRFMKGIR ELLLPFFLYYLLQTVLMLAPLYWLAPKALALFNKAYGFEQLLLSMLPWTALYAVYALLVR LLFLFLQFGRASEDRRGLLSVLPVVFRQGLRIAGNALLLVLLGFLLAVAATYASYIWAGL TALIIHQIYPLVRTFVKMWSIAAQREIWESYRT >gi|333608660|gb|AFDH01000010.1| GENE 38 38224 - 40275 1905 683 aa, chain - ## HITS:1 COG:CC1144 KEGG:ns NR:ns ## COG: CC1144 COG0308 # Protein_GI_number: 16125396 # Func_class: E Amino acid transport and metabolism # Function: Aminopeptidase N # Organism: Caulobacter vibrioides # 92 587 71 615 807 113 25.0 1e-24 MLVNGVKIMKVKMANRKKAWLVSAAAAFLGAAFLANSLLSSPEERTGQTSRAVLSGTAQN PVSPVNAEPSSSIGQPPATGEGVHQPLSKRIVEYHINVEYSPENQKLLGQQTVTWKNPGS QPVQELYMHLYPNAFASEKTTFMKESGGKLRGDEAKKGSFGDMELRSIKTGDETDLSSAM QFVQPDDGNPDDRTLIKITLPKPVAAGAAITLHTEFAVKLPQVFARMGVTKDFVMAGQWF PKLAVYEPAGTRGRTAEGWNLHQYHGNSEFYADFGIFDVRVKVPADYIVAATGFPTKNPV VEAGKKTYQFYADDVHDFAWSASPNFKVFEEPYAAPNLPGVKIKLYLDPKHEPYKSRYMI AAKKALSRYSQWYGTYPYSTLSVVVPPEGANGAGGMEYPTLVTAWGASEGTPDLELERVV VHEIGHQFWYGLVATNEFEEAWLDEGFTSYTEDKLMELEYGSKPNLPVEASYITSPAALQ KNAWGYRSHGEYADNVYTRAKLVLKEIENRVGLNTMDRIMKTYFQRWKFKHPGTRDFQTV VEEITKTKWTEFFDQYVYGSMMTDYAVDSIRIRQANESGQTLYESSVLVRKFGGTVPAVP IRFHFADGSTTEKIWDGQGEQIEYKLTHKSPVDWVSLDPKYTLKLENRHINNYMKTEVDT TWRIRWTLGVVKLLETLFDTVAW >gi|333608660|gb|AFDH01000010.1| GENE 39 40232 - 40360 73 42 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MAIFTFMIFTPLTSIYSMYMFAFRGLLAKINEEEQNYFSRKA >gi|333608660|gb|AFDH01000010.1| GENE 40 40370 - 40876 600 168 aa, chain + ## HITS:1 COG:no KEGG:PPSC2_c0111 NR:ns ## KEGG: PPSC2_c0111 # Name: not_defined # Def: ywhd # Organism: P.polymyxa_SC2 # Pathway: not_defined # 3 167 2 166 168 215 66.0 5e-55 MDSHKEEPKKKPAALNIVSTKVNHKGFGAGSIDLSNVSSLILDGDEAYLDMGALHAKSQV EKRIKFSTNKEDVPDGRRCWIVWVAVDRSPEGTSYGGVTACEMLIDTEARRGWKILADHV NRMDAAMKRKIMVEGLDETEKSALRKALIEHNEEWWNHSSEELKQALA >gi|333608660|gb|AFDH01000010.1| GENE 41 41288 - 43366 2169 692 aa, chain - ## HITS:1 COG:BH3812 KEGG:ns NR:ns ## COG: BH3812 COG0744 # Protein_GI_number: 15616374 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase (penicillin-binding protein) # Organism: Bacillus halodurans # 52 669 37 660 687 548 45.0 1e-155 MADDQQNEPENNAAPDKKPPGPADKNWPGRLKRGFTFSFTTFLVLCVLGGVFLLYLRSQA LPVTKVLQTSQIFDVNGALIDTLDSGQNRKIVPISDISVYVVKATLAIEDQNFYSHPGFD VKSIARAAIVNLKSMSKVQGAGTITQQLARNLYLNHDRTWTRKIKETVYAVQMEMQLTKD QILESYLNQIYYGHSTYGIEAASQLFFGKHAKDLSLAQSAMLVGVPKGPKFYSPYYNMEN AMDRKNVVLQTMAKEGFITQQEADAAKQEKLTVQPLVEKKPSQAPYFRDYIKTLAVQKLG ITEDQFEQGGLNIYTTLDLKAQKIAEEQMAKQLPKESEIQGALISLDPRTGYVKAMVGGK DYGANQFNRVFATTRQPGSSFKPFVYLTALQNGFTPLSTVRSEPTVFKYDEGRQSYTPRN YNDQYENADIDMRRAIAKSDNIFAVDTILKVGPQKVIDNARKFGITSDLKPLPSLALGTY PVSPYEMVAAFSALANQGVRVEPTAIIKIEDMAGSVLYQAAPKSERVADAAPAYVLTHMM ESVFEDGGTGSRVAATIKRPVAGKTGTTDADAWMVGYTPELATAVWVGYDKGRAINTAES HLASPIFAGYTEAVLEAIPPKLFPVPEGVTTVYIDPKSGKLANEDCTTGARNEAFLSGTE PKEYCTNRAAKGKGFGSGARSWWEDVKRWWNE >gi|333608660|gb|AFDH01000010.1| GENE 42 43742 - 44569 944 275 aa, chain + ## HITS:1 COG:BH3811 KEGG:ns NR:ns ## COG: BH3811 COG0421 # Protein_GI_number: 15616373 # Func_class: E Amino acid transport and metabolism # Function: Spermidine synthase # Organism: Bacillus halodurans # 1 275 1 275 275 387 76.0 1e-107 MELWYTEKQTEDFGITAKIKETLVTEKTDFQDLAMIDTAEWGRMLVLDGMVMTTVRDEFV YHEMVAHPALVTHPNPKNVLVVGGGDGGVIREVLKHPKVEKAVLVEIDGKVIEYSKKYLP EIAGELDNPRVEVIVNDGYMHIHDHKNTYDVIMVDSTEPVGPAVELFSKGFYQGIYDALK EDGIFVAQTDNPWFKADLIQTVNRDVREIFPIVRVYGANIPTYPSGLWTFTMGSKKYDPL QVEEASIPEFETKYYTPRLHKAAFALPKFVEDLVK >gi|333608660|gb|AFDH01000010.1| GENE 43 44604 - 45473 1063 289 aa, chain + ## HITS:1 COG:BS_ywhG KEGG:ns NR:ns ## COG: BS_ywhG COG0010 # Protein_GI_number: 16080801 # Func_class: E Amino acid transport and metabolism # Function: Arginase/agmatinase/formimionoglutamate hydrolase, arginase family # Organism: Bacillus subtilis # 1 289 1 290 290 426 72.0 1e-119 MRLDQAYSGNIFIAASEDYASSRAVLYGMPMDYTVSFRPGSRFGPARIREVSIGLEEYSP YLDKSLDEVKYFDAGDLMLPFGNAGRSLDIIGEYVRGLLSDGKFPLGMGGEHLVSWPVIR EVYAKYPDLALIHIDAHADLREQYEGEPLSHSTPIRKAAELIGGKNVYQFGIRSGMREEF EYARKNLNLYPFEVLEPLKKVLPELAGRPVYLTIDIDVLDPSAAPGTGTAEAGGITSKEL LAAIHAIAGSELNIVGADVVEVAPVYDPSEQTQIVAAKLIREILLGLVK >gi|333608660|gb|AFDH01000010.1| GENE 44 45745 - 46161 324 138 aa, chain + ## HITS:1 COG:BS_ywiB KEGG:ns NR:ns ## COG: BS_ywiB COG4506 # Protein_GI_number: 16080787 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 6 134 10 137 142 63 31.0 1e-10 MSNKKNVRIRITSVAGQESIIQEARGELYIREGKVYVLYQETSEEMGSTSTMVKAGPEEL KITRKGQVGSEQTFVAGHSRTGWYRMPQGSLPMETRTRTYVRNLQDGIGVIDWSYDLYVG EEHAGLYILSLTIQEDVR >gi|333608660|gb|AFDH01000010.1| GENE 45 46158 - 47831 2193 557 aa, chain + ## HITS:1 COG:BH3808 KEGG:ns NR:ns ## COG: BH3808 COG0018 # Protein_GI_number: 15616370 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Arginyl-tRNA synthetase # Organism: Bacillus halodurans # 1 557 1 556 556 722 63.0 0 MNVLEQVKETLKVTIGEAAVAAGLVQASELPEIVLEVPKDKSHGDFATNLAMQLSRIAKQ NPRAIAEQLIQKLDKEKAQIADVQIAGPGFINFRMDKSYLYPILAQVAEQADAYGAVNVG QGRKVQMEFVSANPTGSLHLGHARGAAVGDALCNVLALAGYNVTREYYINDAGNQVNNLA KSIEARYLQALGQDAEMPEDGYHGEDIKGFGSELAAEEGDRLTKLGQDERLAYFRQYGLK KELDKIKRDLGRFGVKFDEWFSETSIYENNLIDDVLGKLRESGYVYELDGATWLRTTELG DDKDRVLIKNDGSFTYLTPDVAYHRNKFQRGYDELINIWGADHHGYIPRMKAAMTALGYD ANRLTVLIAQMVSLFQNGEKVKMSKRTGKAVTMEDLMDEVGVDAIRYFFTMRSMDSHLDF DMDLAISKSNENPVFYVQYAHARICSIFRQAEEQGVELRELAQVDLSRLSTEAEYELLRK IGELPQEVAVAAELYAPHRLIRYVYDLAGLFHSYYRAERVITEDAEQTQARLALLGALRT VISNVLTVVGVSAPDRM >gi|333608660|gb|AFDH01000010.1| GENE 46 48141 - 49319 866 392 aa, chain - ## HITS:1 COG:BS_aprE KEGG:ns NR:ns ## COG: BS_aprE COG1404 # Protein_GI_number: 16078094 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Subtilisin-like serine proteases # Organism: Bacillus subtilis # 71 362 87 363 381 198 41.0 2e-50 MDSKRLLMMLHEEIQASQGERRHIILFQSDRDYRQVTELIRLHKDTHSSLSSVYDLKLIR GISCPIRNRAELIKHPAVLSIEEDASINIQLRPRKTVKTSEIVEKTSEGSQFIPWGVQQI KAPDVWKKAKGSRVTIGVIDTGIDYYHPDLQASVARGINLLNRNQPPYDDNGHGTHIAGT IAAAGRIGIVGVAPKAIIHAVKAFDMNGSAFVSDIVAGIDWCVRNGLDIINMSFGMKTYS RALEEAVINAYQSGTIVVASSGNDGKGAAIDYPARFPSVFSVGATTKVNKVAPFSNRGKR IDIFAPGESIYSCWLHGKYNELSGTSMATAHVSGVIALMLSVRPSLRPQQIKQILRRSAT PLTRAKQPEGTDAPGLIHARRAVTALLKTNQT >gi|333608660|gb|AFDH01000010.1| GENE 47 49690 - 50277 728 195 aa, chain + ## HITS:1 COG:BH3793 KEGG:ns NR:ns ## COG: BH3793 COG3343 # Protein_GI_number: 15616355 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, delta subunit # Organism: Bacillus halodurans # 8 94 5 91 164 72 40.0 5e-13 MSSPYTLKIKPEKAAEMPMVDLAFEVLKAANTPFYYRDLMQEIAKIKGLAEDETMNVIAQ LYTEINIDGRFACVGTNLWGLKRWYPVEKSDDAVGNAKRPRIINDEDDDLDEDPYSEEEE YKEEEYDTFTADGFDKNDAEEEEEEEEEEEDTEFFEEEELDEELEDAELDEEVDEESDDE SDDDEDFEADDKKDK >gi|333608660|gb|AFDH01000010.1| GENE 48 50579 - 52195 1776 538 aa, chain + ## HITS:1 COG:BH3792 KEGG:ns NR:ns ## COG: BH3792 COG0504 # Protein_GI_number: 15616354 # Func_class: F Nucleotide transport and metabolism # Function: CTP synthase (UTP-ammonia lyase) # Organism: Bacillus halodurans # 2 530 3 530 532 830 74.0 0 MTKYIFVTGGVVSSLGKGITAASLGRLLKNRGLKVTIQKFDPYINIDPGTMSPYQHGEVF VTDDGAETDLDLGHYERFIDINLSKNSNVTTGKVYSSVITKERRGEYLGGTVQVIPHITN EIKDRVFRAGREAGSDVVITEIGGTVGDIESLPFLEAIRQIKSDIGRENVMYIHVTLIPY IKAAGEVKTKPTQHSVKELRSLGIQPHVIVCRTEHALTEDMKRKIAQFCDTDPEAVVECL DAETLYEVPMMLREQGLDDIVVNHLKLGGSAQPDMTEWEQLVQRVKGLKETTEIAIVGKY VALHDAYLSIVESLGHAGIDNGAEVKIRWVNAEEVYDHNVDELLGGVDGILVPGGFGDRG IEGKVIAIRHAREKKIPFFGICLGMQVAVIEYARALANLEGANSSEINPVTPYPVIDLLP EQKDIENLGGTMRLGLYPCKLAEGSLAMQCYNDELVYERHRHRYEFNNEYREMIESAGLR ISGTSPDGRLVEIVELPDHPWFLAVQFHPEFTSRPNRPQPLFREFVKAAFTYKQESRA >gi|333608660|gb|AFDH01000010.1| GENE 49 52355 - 52735 389 126 aa, chain + ## HITS:1 COG:BS_spo0F KEGG:ns NR:ns ## COG: BS_spo0F COG0784 # Protein_GI_number: 16080766 # Func_class: T Signal transduction mechanisms # Function: FOG: CheY-like receiver # Organism: Bacillus subtilis # 1 118 2 119 124 152 68.0 2e-37 MSKKILIVDDQNGIRMLLMEVFSNEGYETYQAPNGKTALEIVKTHSPDLVLLDMKIPGMD GLDILKHVKSIDPSIKVIMMTAYGELDMIKEATELGAIMHFTKPFDIDELRLAVHTQLIE TTPLGS >gi|333608660|gb|AFDH01000010.1| GENE 50 52892 - 53746 950 284 aa, chain + ## HITS:1 COG:BH3786 KEGG:ns NR:ns ## COG: BH3786 COG0191 # Protein_GI_number: 15616348 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose/tagatose bisphosphate aldolase # Organism: Bacillus halodurans # 1 284 1 287 287 298 56.0 5e-81 MPLVSMNEFLPKAKANKFAVGQFNMNNLEFAQAITEAAMELNSPFIFGVSEGALKYMGIE YTVAIAEAAAKQSGLPIALHLDHGSSFEVAMKCIRAGFSSVMFDGSHYSYEENVRLTKEV VKAAHAMGVSVEGELGTIGGVEDDISVDEADANLAKPEEAIRYYEETGVDCVAIAVGTAH GMYAGEPNIHFDIIEKVSQAIPIPVVLHGGSGVPDEMIKKAIAAGAGKVNVNTENQVAAT AAIREVLGADAKVYDPRKYLTPARKAMVEVVKSKIQLFGSANQA >gi|333608660|gb|AFDH01000010.1| GENE 51 54088 - 55347 1348 419 aa, chain + ## HITS:1 COG:BH3784 KEGG:ns NR:ns ## COG: BH3784 COG0766 # Protein_GI_number: 15616346 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine enolpyruvyl transferase # Organism: Bacillus halodurans # 1 415 1 415 428 538 66.0 1e-153 MEKLMIAGGRPLKGTVTISGAKNSAVALIPAAILAESTVTLDNLPHLSDVAIYTEILSEL GASIEWNNEQMIIDPSAMKSKPMPNGNVKKLRASYYLMGAMLGRFGEAIIGLPGGCNFEP RPIDLHIKGFEALGAEISNENGSLHIRAKQLRGAKIYLDMVSVGATINIMLAASRAKGFT LIENAAKEPEIIDVATLLNSMGAKIKGAGTETIRIEGVDEMHGCRHSIIPDRIQAGTYMI AAAATRGDVTVDNIIPKHMEAMTAKLQEMGVEIHEMDESIRVVGRALYDSIDVKALVYPG FATDLQSPMTSLLTQTTGVSMLTDLVYSNRFKHVPELVRMGAKIKVEGRTAVIEGSTLSA AKVKASDLRAGAALVIAGLTVPSDVTEVTGVEYIDRGYENLVANLTLLGAEVWRENGEE >gi|333608660|gb|AFDH01000010.1| GENE 52 55441 - 56733 1074 430 aa, chain + ## HITS:1 COG:BH3781 KEGG:ns NR:ns ## COG: BH3781 COG1158 # Protein_GI_number: 15616343 # Func_class: K Transcription # Function: Transcription termination factor # Organism: Bacillus halodurans # 1 422 1 423 423 641 76.0 0 MDMHLAQLEALKLTELYKLAKKYQIPYYGQLKKKELIFSILRAQAAESGLMFMEGVLEVL QEGFGFLRPINYLPSTEDIYISASQIRKFDLRSGDLVSGKCRPPKENERYFGLLHVEAVN GESPDTASERLHFPALTPLYPQTKVVLETSPEKLSTRIMDLMAPVGLGQRGLIVAPPKAG KTLLLKEIANSISTNYPEIELFVLLIDERPEEVTDMQRSVKGEVVASTFDELPENHIKVA ELVLERAQRLVEHKKDVVILLDSITRLARAYNLVVPPSGRTLSGGIDPGAFHRPKRFFGA ARNIEEGGSLTILATALVETGSRMDDVIYEEFKGTGNMELHLDRKLAERRTFPAIDIRRS GTRREESLLTKEELEKVWGLRKSMNDTYEYTEAFIKKLGETKTNQEFLDSLETNNGNVTL GKGKMKNSAS >gi|333608660|gb|AFDH01000010.1| GENE 53 56788 - 58050 1166 420 aa, chain + ## HITS:1 COG:no KEGG:PPE_00140 NR:ns ## KEGG: PPE_00140 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 1 411 1 411 423 705 81.0 0 MNVVYADPSGNVFDHPDYEALGRSADQIVELLEEELIPLPEGATLVSLPHTRAVGINTET GEMEVLPGDFAAVGALLPQGFTRLMLPGYVKTDKEEKFPLFGYTAVVWKDGAFYVAAEQC DDPEPWNPRNCDPDELEVGVEKLRARYPENRLYEHLSKCALEYECLTASNTFLNRWEGAV PVSFSCNAGCFGCISEQPDDSGFPAPQTRMNFKPQAKELAEVMLEHLKTPDSIISFGQGC EGEPSTQAKLIIEAMREVRSRTDMGYININTNAGLSDHIRGIVDAGLDLMRVSTISALDD HYNAYYKPRGYTLANVEKSLKYASSQGVITSINYLIFPGVTDREEEVEAMIEFVRRTGLR LIQMRNLNIDPESYLNLIPKAQGDILGMKQMLDIYREELPDVVIGSYTHIPAFFDRAQRA >gi|333608660|gb|AFDH01000010.1| GENE 54 58155 - 58352 341 65 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167464107|ref|ZP_02329196.1| 50S ribosomal protein L31 [Paenibacillus larvae subsp. larvae BRL-230010] # 1 65 1 65 65 135 90 4e-31 MKQGIHPNYHETTVTCACGNTFESGSVRENLRVEICSNCHPFFTGKQKFIDAGGRVDKFK KKYGI >gi|333608660|gb|AFDH01000010.1| GENE 55 58453 - 58854 372 133 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MGNVIVKRSAGGLLAALVMAAAITGCSPGQPAGPKAYNYSSDGYLGTTSANPNLALNPGY HTYQADSDIALSVLGRLKGVVDTHLQFNGPIGYVKLYVSPGTPPEKAAAIRAQAEQDLHT QLPRYRFIVTVKR >gi|333608660|gb|AFDH01000010.1| GENE 56 59403 - 60851 1211 482 aa, chain + ## HITS:1 COG:BH1920 KEGG:ns NR:ns ## COG: BH1920 COG0642 # Protein_GI_number: 15614483 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Bacillus halodurans # 151 480 211 537 548 187 32.0 5e-47 MLDASLHHIGVFISAAELGVRLEEMFKGCLIVANAHNEMVYVNEPFLKRTGYTAEDMKMA PFSEVIQLPEPVDRFYSRHFDTDSDKTDAKYPIAIVKDSQGFIQLQKCSMLFAEVNSMPH YLFLLDDLEEMSEQNLLQRFSGTFLRDVNLGVLLIDTEFRLVDISDMACRVLGFHKESIL FKRIEDIFASIPPEHRLVERTLLDGRIVRNHAVSWMNNQERYELLLDSNLLRDNEDQIVG AYIIFKDVTNLRSLEAQVQRSDRLAMIGQIAAGTAHEIRNPLTSIKGFLQVLKKTFESKD MAKEQGYIDVMLDEINRVNELVNEFLLLGKPKNVLLQKIDVSTVIKGILPIINNEAILHK VHMNYEESSGLPSVIADQELLKQVFLNICKNGIEALTDGGTLTIVEKLDPDGRFVNIEVH DTGPGIPVYVIDKIFDPFFTTKEEGTGLGLSVCQRIIHDMGGHIRVSSKGYGTTFTVSIP CI >gi|333608660|gb|AFDH01000010.1| GENE 57 60938 - 62674 1290 578 aa, chain + ## HITS:1 COG:BH0034 KEGG:ns NR:ns ## COG: BH0034 COG2812 # Protein_GI_number: 15612597 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, gamma/tau subunits # Organism: Bacillus halodurans # 1 577 1 564 564 477 44.0 1e-134 MTHIALYRTWRSQAFRELVGQKPIVQTLQNSLREQRFTHAYLFSGPRGTGKTSAAKILAK AVNCVHGPAEEPCNECEACIRISQGSVMDVVEIDAASNRGVEEIRDIRDKVKYAPTEVRY KVYIIDEVHMLTTEAFNALLKTLEEPPAHVIFILATTEPHKLPATIISRCQRFDFRRVSM EEQVGRLAYVCREENIAIEEEALHYIARLSEGGMRDALSLLDQASSFAVGTIAASDVVAM TGGLASDQFEKLVGSMKEQDIGAALELIDQFMQEGKSADKCMENLIHYFRDLLMIRLVPD SSVLTERVFDVARLDQVASRFGIDQLITIIEVLNQYQSEMKYSVQPQTILEVAVMKACGA IASGCGSRPSEAPAASRSAAEPEPEALSQLTRRIQQLEEQLAKLMQGGVPAAGAQQSRSP VAPRSSNAAVRKASVRLDDFTAAVDSHHTRALLGKWTQILAMVKERKITVHAWLVDGEPV AIHGDTVLVAFKSAMHRDTTEKPANKQLIEQVISEALGETLKLATVMQKEWKEAREGASE PAREEMTLQAEDSEPDKEPWVDEAIKLFGEDLVSIKDE >gi|333608660|gb|AFDH01000010.1| GENE 58 62695 - 63021 217 108 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149916415|ref|ZP_01904934.1| 30S ribosomal protein S21 [Roseobacter sp. AzwK-3b] # 1 105 3 107 114 88 38 1e-16 EGVGNMNNMNQMMKQVKKMQEQMLKVQEELGSKTVEGTAGGGVVTVTANGHKKVTAIAIK PEAVDPDDVEMLQDLVLTAVNDALNKAEELAGKDMGKFTGGMNIPGLF >gi|333608660|gb|AFDH01000010.1| GENE 59 63084 - 63680 547 198 aa, chain + ## HITS:1 COG:BS_recR KEGG:ns NR:ns ## COG: BS_recR COG0353 # Protein_GI_number: 16077089 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecF pathway) # Organism: Bacillus subtilis # 1 198 1 198 198 314 76.0 7e-86 MHYPEPISKLIDAFTRLPGVGPKTAGRLAFHVLRMKEEDVLDFAKALVNVKRNLHYCSVC CNITDIDPCRICQDKSRDGSVICVVQEPKDLVAMERTREFDGYYHVLHGAISPMEGIGPD QIHIAELLKRLGDEQVKEMILATNPNIEGEATAMYLSRLVKGFGLKVTRIAHGLPVGGDL EYADEVTLTKALEGRREI >gi|333608660|gb|AFDH01000010.1| GENE 60 63879 - 64127 320 82 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFQRRIQKTVEQDKQELLAEIRLAHSQWKTAQHHFEHALEKDEIDYAIYAVEAAEKRYEM LLRQAKKLNVTSAYHITAEVRG >gi|333608660|gb|AFDH01000010.1| GENE 61 64124 - 64387 190 87 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKTAVWGMLALSAGALLFLLVRQPGVRKIFSSIGVHVVVAAFLLYGIQLLSGYTRFELPI NIYTVGTVSVLGVPGLMLLAALKVVLV Prediction of potential genes in microbial genomes Time: Sun Jul 17 07:41:31 2011 Seq name: gi|333608640|gb|AFDH01000011.1| Paenibacillus sp. HGF7 contig00069, whole genome shotgun sequence Length of sequence - 19193 bp Number of predicted genes - 19, with homology - 18 Number of transcription units - 5, operones - 4 average op.length - 4.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 1178 1162 ## COG1404 Subtilisin-like serine proteases + Term 1366 - 1406 6.3 - Term 1863 - 1901 1.9 2 2 Op 1 9/0.000 - CDS 1908 - 3023 1427 ## COG0327 Uncharacterized conserved protein 3 2 Op 2 . - CDS 2999 - 3757 643 ## COG2384 Predicted SAM-dependent methyltransferase 4 2 Op 3 . - CDS 3761 - 4588 598 ## Pjdr2_2245 hypothetical protein 5 2 Op 4 . - CDS 4671 - 5657 830 ## COG1073 Hydrolases of the alpha/beta superfamily - Term 5675 - 5711 4.1 6 3 Op 1 31/0.000 - CDS 5717 - 6841 1200 ## COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) 7 3 Op 2 2/0.000 - CDS 6881 - 8707 1355 ## COG0358 DNA primase (bacterial type) 8 3 Op 3 3/0.000 - CDS 8769 - 9212 247 ## COG1671 Uncharacterized protein conserved in bacteria - Prom 9235 - 9294 2.5 9 3 Op 4 . - CDS 9316 - 10143 1016 ## COG1806 Uncharacterized protein conserved in bacteria - Prom 10271 - 10330 1.8 - Term 10217 - 10260 3.8 10 4 Op 1 . - CDS 10373 - 11119 420 ## COG1381 Recombinational DNA repair protein (RecF pathway) 11 4 Op 2 . - CDS 11169 - 11315 180 ## 12 5 Op 1 6/0.000 - CDS 11427 - 12326 1105 ## COG1159 GTPase 13 5 Op 2 3/0.000 - CDS 12344 - 12748 291 ## COG0295 Cytidine deaminase 14 5 Op 3 11/0.000 - CDS 12812 - 13513 745 ## COG0818 Diacylglycerol kinase 15 5 Op 4 7/0.000 - CDS 13510 - 14040 616 ## COG0319 Predicted metal-dependent hydrolase 16 5 Op 5 4/0.000 - CDS 14074 - 16290 1421 ## PROTEIN SUPPORTED gi|163762592|ref|ZP_02169656.1| ribosomal protein S21 17 5 Op 6 . - CDS 16333 - 17304 1054 ## COG1702 Phosphate starvation-inducible protein PhoH, predicted ATPase 18 5 Op 7 . - CDS 17311 - 18501 1035 ## PPSC2_c3605 sporulation protein YqfD 19 5 Op 8 . - CDS 18527 - 18805 303 ## Pjdr2_2229 sporulation protein YqfC - Prom 18993 - 19052 2.8 Predicted protein(s) >gi|333608640|gb|AFDH01000011.1| GENE 1 3 - 1178 1162 391 aa, chain + ## HITS:1 COG:BH1491 KEGG:ns NR:ns ## COG: BH1491 COG1404 # Protein_GI_number: 15614054 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Subtilisin-like serine proteases # Organism: Bacillus halodurans # 84 370 299 584 588 325 54.0 1e-88 GATKVKLIGNTYIITARSLEAKQLMDYFRKRQDVRFVEPHYIYETNDLSRGTKPLSWFFD WWPGSRSDNSGPARSGAGEQAAAQPDVIPNDVLFNKYQWNLPITNTLRGWNFNKGTQDVK VAIVDTGADVNHEDLKGQLIEGYNVLDPTAQPMDDVGHGTHVAGIIGAQVNNGLGVAGMT WYNKIMPVKALDSSGVGSTYAVAQGIIWATDHGAKVINLSLGNYASSDFLHDAIKYAYDR DVVLIAASGNDNTERPGYPAAYPEVFAVAATDSSNGRASFSNYGDYIDVAAPGVSIASTY PQNQYAALSGTSMACPHVTALAALLRSANPSLKNTEVMELMRQTASDIGDKGRDTYFGFG LINVDKAVEAALGRGPVQAGLPGTKPAPVAP >gi|333608640|gb|AFDH01000011.1| GENE 2 1908 - 3023 1427 371 aa, chain - ## HITS:1 COG:BH1380_1 KEGG:ns NR:ns ## COG: BH1380_1 COG0327 # Protein_GI_number: 15613943 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus halodurans # 3 124 4 125 129 158 62.0 2e-38 MFAKGQTVIQLFEKLAPKHYAVPDDKIGLQLGTLQKEIKKILVALDVTDEVVDEAIRTGA DLIIAHHAIIFRPLAHLQTDTPAGRLYEKLIKSDIAVYIAHTNLDVAEGGINDLMAEALG LKDLVPLDEVHTEKLSKLVVFVPESHHEKVLQALFQAGAGWIGDYSHCSFNIPGMGTFMP REGTKPFLGEQGKLERADEVRVETIVPAGIQRAVVQAMLKAHPYEEVAYDLYPMDLKGRT FGLGRAGKLPEPLTLRELVAAAKEAFDVPMVRVVGDLDRTVRKAAVLGGSGGRYVRGAMF AGADVLVTGDIDYHTAHDALAAGMCLIDVGHNVEKIMKRAVADYMNRALAEKKYGTVAAA SEPSTEPFQFL >gi|333608640|gb|AFDH01000011.1| GENE 3 2999 - 3757 643 252 aa, chain - ## HITS:1 COG:BH1379 KEGG:ns NR:ns ## COG: BH1379 COG2384 # Protein_GI_number: 15613942 # Func_class: R General function prediction only # Function: Predicted SAM-dependent methyltransferase # Organism: Bacillus halodurans # 3 244 5 234 235 186 47.0 4e-47 MVKLSQRLLEIAKKVPQGAKLADIGSDHALLPTFLVQQGTVPSAVAGEVNRGPAEAAQRQ VRDANLSGQIEVRLGDGLSVLRPGEVDAVTIAGMGGALIASILDAGEDNLAGVTTLILQP NVGEDIVRKWLRSHGWHLADETILEEDGKIYEILTAVRMKPEDEGDAALYADRLLDGLRV TGDTLLQMGPYLIQDPPAVWFSKWEYELDKLAMIRRQLDRSVSEKAEEKRSGLEAEISRI KEVLECLRKDKP >gi|333608640|gb|AFDH01000011.1| GENE 4 3761 - 4588 598 275 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_2245 NR:ns ## KEGG: Pjdr2_2245 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 1 275 1 279 279 155 37.0 1e-36 MDDEKRTAIIKEIEHWRRSRLLPAQYCDFLLNLYMETGADHSRRVLGISTKSIRGSHWKF WVAAVVTIIILSLTLLNFNSFGISLQIGVSAVFVVSWYIIGFRQKEEQPFRAQLSTGIAS ASLIGFGVWILYGNGLTAQLYLGSFVALCGLVWLLVGLLGRTPLLQYCGWLALLITYGFV LSQRLEPATWYKLQLAWLPLSFILMWIGWLIQHRWKKPGLVLLLAGATVWIAPELFGLAW GTSAQQLLQLSLAGKVAAAGIALFAYRKNWTEWVA >gi|333608640|gb|AFDH01000011.1| GENE 5 4671 - 5657 830 328 aa, chain - ## HITS:1 COG:lin2180 KEGG:ns NR:ns ## COG: lin2180 COG1073 # Protein_GI_number: 16801245 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Listeria innocua # 1 315 1 319 319 282 46.0 5e-76 MSKTLLISLCILAVLAVALTAAAFYMFGLGIRRSSKEFLQNSPDLAGHMEEIAVDPSPAT ADNWLARQTLEQVSIQSADGLRLNGWYLEAERPSGVTALLAHGYSGQGRDMASFAQIHHE LGYNVLMPDNRGHGQSEGEYIGFGWTDRLDYVNWTRYILQRSGEDARILLHGVSMGGATV LMASGERLPEQVKGIIADCSYTSVKDILSYQLKRMFKLPAFPLIPLTSLICKIKAGYFFG EASALKQVKRTEKPILFIHGEADTFVPFFMVHGLYKAAPAGKDLFMVPRAGHGLAFMTDK EGYRSRVTDFAKQCLEEKQKVLQARSEA >gi|333608640|gb|AFDH01000011.1| GENE 6 5717 - 6841 1200 374 aa, chain - ## HITS:1 COG:BH1376 KEGG:ns NR:ns ## COG: BH1376 COG0568 # Protein_GI_number: 15613939 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) # Organism: Bacillus halodurans # 10 374 11 372 372 520 82.0 1e-147 MANDQHTEIETELTLEQVKEQLIELGKKRSSLTYKDITERLAPYDQDPEQIDEFFEQLSE MGIDVGNESDEDEGRMRPEGDQENDEFSFEDDLTLPPGIKINDPVRMYLKEIGRVPLLSA ENEVDLAKRIEQGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEK FDHTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREP TPEEIAKEMELSTDKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPADAAAYE LLKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL RHPSRSKRLKDFLE >gi|333608640|gb|AFDH01000011.1| GENE 7 6881 - 8707 1355 608 aa, chain - ## HITS:1 COG:BH1375 KEGG:ns NR:ns ## COG: BH1375 COG0358 # Protein_GI_number: 15613938 # Func_class: L Replication, recombination and repair # Function: DNA primase (bacterial type) # Organism: Bacillus halodurans # 5 607 4 599 599 529 45.0 1e-150 MGYGRIPDEVIEAVLQRHDIADVIGKYVHLTKQGHYLKGLCPFHSEKSPSFTVTPEKQIY HCFGCGAGGNMFQFLREIEGYTFAEAVRHLAEEADIPVTWEESLSADNPQQKDRSKMLEA NEKAAKLYRYILMNTDQGKNALDYVRNRQMSDKLIDAFQIGYAPAMWDTLVQQLQKAGYD LPLMERGGLVSARSEGDGYIDKFRDRVIFPIWDAQGKVIAFGGRALGDVQPKYLNSPETM LFNKSRVLYNFHQARPQIRKTNTMVLFEGYMDVVKAWEAGVRNGVGTMGTALTPEHAELI RRNAGRVVICYDGDSAGQNAAYKAIPLLEQAGCEVKVAMLPDAQDPDEYITAYGSERFVR EIIDYAVPSIKYRLHYIRRHFRLQEEGDRIRYQQTALKMIADLSSIEREHYLKQLAGEFE TSYESLKQDLANLRMKSEKNRTVRDNIDVPWNNGRHNRKETPKAPLYPAYHNAERQLLAV MMHDRDVSAYVEERLGDEFNVDAHAVLAAYLYAFYAQNSTPSVSRYMAMIQDDKLENLAS SIAMMGAHHGVNEVVIDDYIKEIKKYPKQQEISRKKEEMIRAERSGDPLRAAQILSEIIA LEKQLKFS >gi|333608640|gb|AFDH01000011.1| GENE 8 8769 - 9212 247 147 aa, chain - ## HITS:1 COG:BS_yqxD KEGG:ns NR:ns ## COG: BS_yqxD COG1671 # Protein_GI_number: 16079577 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 138 50 188 196 133 48.0 1e-31 MDADACPVKPEIIRAAAQYSVHVLMVASFDHRLKGQEGIEVIQVDRSDQSVDLFIANHIR RGDILVTQDFGLAAIGLGKGAVCLSNRGQEYTDRTIDFLLDRRHTQGKLRRGGKHSKGPK PFTDEDREFFLHGLTKVLLRLQENRPV >gi|333608640|gb|AFDH01000011.1| GENE 9 9316 - 10143 1016 275 aa, chain - ## HITS:1 COG:BH1373 KEGG:ns NR:ns ## COG: BH1373 COG1806 # Protein_GI_number: 15613936 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 9 264 9 264 270 288 58.0 5e-78 MNPSNNPVIVYVVSDAIGETGESVVNAVALQFYPAPIVIERVPFVHDTEEIDRLLAKVAR QQGIIAFTLVIPELRDYLTQKAEQAGFAYVDLLGPLIQTFEKAFNRKARHQPGGNHPLDE DYFKKMEAIEFAVKYDDGRDFSGIVKADIVLVGVSRTSKTPLSMYLAHKKYKVANVPLVP EMQPPDVLFKVPKNKVIGLLIDPDKLNAIRRERLRTLGLASNATYAKTERIKQELEFAGT VLSRIGCHVIDVSNRAVEETASLVLEQIRRHPHLS >gi|333608640|gb|AFDH01000011.1| GENE 10 10373 - 11119 420 248 aa, chain - ## HITS:1 COG:BH1369 KEGG:ns NR:ns ## COG: BH1369 COG1381 # Protein_GI_number: 15613932 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecF pathway) # Organism: Bacillus halodurans # 1 244 1 244 254 220 41.0 2e-57 MLHRVQGIVLRSVDYGEGNKIITLYTRELGKVGVIARGVKKVKSRLGAVTQLFTYGDYVF YRQGKLGTLNHGEIIEPHHKLREDLYKSAYASYLVEMVDRMLGEEDRSLFLFDQLEAGLM AIEQEKDMQIVAHVFELKMLAASGYTPVLDKCASCGRTEELAAFSAAAGGAMCSRCKHLD PYAAAVTESTLKLMRLLQQVDLSRIGNVNVKPSTKSQLKHSMRLYMDAHVDVRWKARSFL DQMDKYNI >gi|333608640|gb|AFDH01000011.1| GENE 11 11169 - 11315 180 48 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRDFTWHYFWSTGEVDAYLLYKDLASDPELAGEELMQQEQEAVHSVEA >gi|333608640|gb|AFDH01000011.1| GENE 12 11427 - 12326 1105 299 aa, chain - ## HITS:1 COG:BS_bex KEGG:ns NR:ns ## COG: BS_bex COG1159 # Protein_GI_number: 16079583 # Func_class: R General function prediction only # Function: GTPase # Organism: Bacillus subtilis # 1 299 1 299 301 425 67.0 1e-119 MNKEKFKSGFVSIIGRPNVGKSTLMNQVIGQKIAIMSDKPQTTRNKIHGVYTTDNSQIVF LDTPGIHKPSSKLGDYMMKVAHSTLGEVDAILFLADVSEGIGGGDRYIIEQLKNVKTPVI LVLNKIDQVHPEQLLPIITTYKDLYEFAEIVPVSALLGNNVNTMLEQVVKYLPEGPQYYP ADQITDHPEQFVCAELVREKILHMTREEIPHSIAVAIEDMKVEKNGVVHISAVIYVERDS QKGIIIGKQGSLLKEIGKQARHDIEALLGSKTFLELWVKVKKDWRNQERVLRDLGFRNE >gi|333608640|gb|AFDH01000011.1| GENE 13 12344 - 12748 291 134 aa, chain - ## HITS:1 COG:lin1500 KEGG:ns NR:ns ## COG: lin1500 COG0295 # Protein_GI_number: 16800568 # Func_class: F Nucleotide transport and metabolism # Function: Cytidine deaminase # Organism: Listeria innocua # 1 132 1 130 131 164 57.0 3e-41 MKPEELLEHARQARLKAYIPYSNFGVGAALLDKDGQVHHGCNIENAAYGPTNCAERTAVF RAVADGHKPGSFQSIAVIGDTEGPIAPCGVCRQVLIELCGPDMPVILGNLSGDYTVTTMG ELLPGAFTSKDLQS >gi|333608640|gb|AFDH01000011.1| GENE 14 12812 - 13513 745 233 aa, chain - ## HITS:1 COG:L95012 KEGG:ns NR:ns ## COG: L95012 COG0818 # Protein_GI_number: 15673069 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Diacylglycerol kinase # Organism: Lactococcus lactis # 7 113 35 142 151 82 45.0 8e-16 MSSFQRFLRGFRFAYEGIKYAFDTQRNMKFHFVVAFLVFLAAVILGLPHWDVLFLLLAVV LVIMTELINTAVEKAVDLAMPDLHPLAKIAKDTAAGAVLVAALFAVVVGMVVFYGPVDRM LRKAQEAAAANMPGMVWTLIALVALVTIVIETRFSDRGKLVRPSLLAAVLAALATLIAVI AGQTIVTLLSGTLAALALMVLAERKHRALSSLLLGSVIGAAITLLAWLWRGWG >gi|333608640|gb|AFDH01000011.1| GENE 15 13510 - 14040 616 176 aa, chain - ## HITS:1 COG:BH1363 KEGG:ns NR:ns ## COG: BH1363 COG0319 # Protein_GI_number: 15613926 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase # Organism: Bacillus halodurans # 24 176 22 158 159 119 49.0 3e-27 MALILAWNDEQDILPISPKFAEKLEELLKLAGEEEGVEDGEVALTFVDDETIHELNRTYR NIDRPTDVLSFAMLEQGEDEPAILYGEEEPDEDSVEGDADADGEEGFEEPLGDIVISVPR AAAQADEYGHSVERELGFLFVHGFLHLIGYDHDNEEAEQEMFAKQEQILQKAGLTR >gi|333608640|gb|AFDH01000011.1| GENE 16 14074 - 16290 1421 738 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762592|ref|ZP_02169656.1| ribosomal protein S21 [Bacillus selenitireducens MLS10] # 19 732 13 733 750 551 41 1e-157 MKKEVAVQDMQANTKLSGWKTSFPVRLLLLFALMLIFCVTLFSRLIPQTFDIKLGAVAEK NIYAPFQIENSVATEKAKEDAAKKLQPVYKIANLRNEAMIDAIYDRILQINADPDVKFED KVSVYRTVIPAIIADTEKMAIRTIGETNFGNETLIDEINSKVSDQKYRIPEEIYYKFPRL TKEDVAAMAPITREIVSKLMSDQISDAQTARAKVAELVNSSDLSKNTLRELVQEIARVVI TPNKFLDQKATDDARGEVRENVKPVYINQGDIIVNEGDVITDEIYKRLKAAELLKEKANY WPHVGLVLLGLLFVMMIYLFVRQSTLPIRTNNSQLLMFVLIFAINMIGMKVVALGQNPEY PFIGYLAPAAIGSMLITILLNPQLAFIASVLFSIMSSIIFNMHGTQLFDYRYGLVTLVTC FASVFVIQKASQRSSILKAGILISFIGMITIVSLMLLDNVTRQDMLYSLSFSAASGILTA VFVIGLLPFFETAFGILSPLKLVELSNPNHPLLRKLLTETPGTYHHSIMVGNLAESAAES IGADGLLCRVGSYYHDIGKTKRPSYFIENQTNIENPHDRIDPALSKSIITAHARDGVEML KEYNIPKPIRDIAEQHHGTTLLTFFYHKARKLAEEEGREVREEDFRYEGPKAQCKEAAVV GIADCVEAAVRSLRNPTIEQIDTMVRKIIKSRLDDGQFNDCDLTLKELDTIAKTLNESLL GIFHSRIEYPSELPAKAK >gi|333608640|gb|AFDH01000011.1| GENE 17 16333 - 17304 1054 323 aa, chain - ## HITS:1 COG:BH1361 KEGG:ns NR:ns ## COG: BH1361 COG1702 # Protein_GI_number: 15613924 # Func_class: T Signal transduction mechanisms # Function: Phosphate starvation-inducible protein PhoH, predicted ATPase # Organism: Bacillus halodurans # 6 315 5 314 320 378 63.0 1e-105 MGENAKTIKVALADTSVAQAVFGPQDRFLHLIEQETNARIFTRDAELTIQGDAEEVRKLE HLFEVLLELVRNQYPLTERDVLYAVELAKQMKADQLLELFKGEITTTHKGKPIRVKTIGQ KQYVSTIQKKDIVFGIGPAGTGKTYLAVVLAVTALKEGKVKRIVLTRPAVEAGESLGFLP GDLQEKVDPYLRPLYDALNDVLGPEQVVKSLERGLIEIAPLAYMRGRTLDDSFIILDEAQ NTTPEQMKMFLTRLGFGSKMVVTGDVTQIDLPRGKTSGLIEAQRILNGIEEIGFITFAEQ DVVRHSLVQRIIVAYNEDSLISG >gi|333608640|gb|AFDH01000011.1| GENE 18 17311 - 18501 1035 396 aa, chain - ## HITS:1 COG:no KEGG:PPSC2_c3605 NR:ns ## KEGG: PPSC2_c3605 # Name: not_defined # Def: sporulation protein YqfD # Organism: P.polymyxa_SC2 # Pathway: not_defined # 1 396 1 397 397 384 49.0 1e-105 MQSAVLKWIQGYVKIEVKGERAAEFINRALSKGFSLWDIRVSGDRLVELCLPCRDALRLR PLLKETGCRMHPLKREGLPFAARKLAKRKTFLAGGVAFIASLFILSSFVWTIKVEGNVKI GTQTILDAARKEGLYLHQWKYRMGDSEKLSFGLQTHLPGTSWVGVEIKGTQVTIKIVEAD KPEEKPLVSPRNLVASKHAVVTEIQAKRGRPLVQPNAYVRKGDVLISGTLGDEANQKIVV ADGYVKGMVWYTSKIEVPMIQTYETYTGDSKTRNYLVFGSKGIQVSGYGKLPFEHYQTIP EQKTLQWRSFKLPVGWLSEKLMASETVERKLDPAEAKAIGLERARADLMSEAGKDARIVT EKILHEKSENGKVYMEVHFEVEEFIMEEQPIVQQGE >gi|333608640|gb|AFDH01000011.1| GENE 19 18527 - 18805 303 92 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_2229 NR:ns ## KEGG: Pjdr2_2229 # Name: not_defined # Def: sporulation protein YqfC # Organism: Paenibacillus # Pathway: not_defined # 1 88 1 88 95 108 62.0 5e-23 MRRLTQKWKQMTANMLDLPQDVVQDIPRITMIGNVQLYVENHCGVMHFSSEMLRLQLTRG KLEVSGKELVIRAILTEEVLIEGIIADIRYMP Prediction of potential genes in microbial genomes Time: Sun Jul 17 07:42:11 2011 Seq name: gi|333608568|gb|AFDH01000012.1| Paenibacillus sp. HGF7 contig00109, whole genome shotgun sequence Length of sequence - 69916 bp Number of predicted genes - 68, with homology - 58 Number of transcription units - 30, operones - 16 average op.length - 3.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 1301 1001 ## COG0513 Superfamily II DNA and RNA helicases - Prom 1332 - 1391 4.3 2 2 Tu 1 . - CDS 1473 - 2147 544 ## Pjdr2_5305 hypothetical protein - Prom 2285 - 2344 4.2 + Prom 2311 - 2370 7.1 3 3 Op 1 25/0.000 + CDS 2444 - 3442 823 ## COG1622 Heme/copper-type cytochrome/quinol oxidases, subunit 2 4 3 Op 2 20/0.000 + CDS 3472 - 5361 1445 ## COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1 5 3 Op 3 . + CDS 5358 - 5978 592 ## COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3 6 3 Op 4 . + CDS 5980 - 6291 264 ## Pjdr2_5301 cytochrome c oxidase subunit IV + Term 6306 - 6354 7.1 + Prom 6301 - 6360 4.7 7 4 Op 1 . + CDS 6393 - 7220 806 ## COG3336 Predicted membrane protein 8 4 Op 2 . + CDS 7275 - 7730 351 ## COG2322 Predicted membrane protein + Term 7763 - 7826 13.5 + Prom 7956 - 8015 6.8 9 5 Op 1 . + CDS 8069 - 8806 426 ## gi|253574582|ref|ZP_04851923.1| conserved hypothetical protein 10 5 Op 2 8/0.000 + CDS 8858 - 9376 482 ## COG1725 Predicted transcriptional regulators 11 5 Op 3 1/0.000 + CDS 9369 - 10313 804 ## COG1131 ABC-type multidrug transport system, ATPase component 12 5 Op 4 9/0.000 + CDS 10353 - 11255 279 ## PROTEIN SUPPORTED gi|225084369|ref|YP_002657150.1| ribosomal protein S16 13 5 Op 5 . + CDS 11248 - 12564 1460 ## COG1668 ABC-type Na+ efflux pump, permease component + Term 12604 - 12630 -1.0 + Prom 12581 - 12640 2.0 14 5 Op 6 . + CDS 12664 - 14046 1275 ## COG3735 Uncharacterized protein conserved in bacteria + Term 14085 - 14135 19.2 - Term 14069 - 14130 18.7 15 6 Op 1 . - CDS 14134 - 16188 1062 ## COG1680 Beta-lactamase class C and other penicillin binding proteins - Prom 16243 - 16302 9.4 16 6 Op 2 9/0.000 - CDS 16310 - 17569 606 ## COG2972 Predicted signal transduction protein with a C-terminal ATPase domain 17 6 Op 3 . - CDS 17589 - 18344 511 ## COG3279 Response regulator of the LytR/AlgR family - Prom 18387 - 18446 2.3 + Prom 18208 - 18267 5.8 18 7 Tu 1 . + CDS 18491 - 18772 103 ## + Term 18860 - 18904 8.1 + Prom 18875 - 18934 6.0 19 8 Tu 1 . + CDS 19053 - 23123 3916 ## COG1409 Predicted phosphohydrolases + Term 23297 - 23344 8.6 - Term 23280 - 23337 17.1 20 9 Op 1 . - CDS 23341 - 24513 1124 ## COG1940 Transcriptional regulator/sugar kinase - Prom 24687 - 24746 4.3 21 9 Op 2 . - CDS 24751 - 24834 61 ## - Prom 25004 - 25063 2.9 + Prom 24709 - 24768 7.0 22 10 Op 1 35/0.000 + CDS 24877 - 26331 1525 ## COG1653 ABC-type sugar transport system, periplasmic component + Term 26344 - 26377 3.6 23 10 Op 2 38/0.000 + CDS 26396 - 27343 1130 ## COG1175 ABC-type sugar transport systems, permease components 24 10 Op 3 3/0.000 + CDS 27374 - 28210 1085 ## COG0395 ABC-type sugar transport system, permease component 25 10 Op 4 9/0.000 + CDS 28310 - 29362 872 ## COG0673 Predicted dehydrogenases and related proteins 26 10 Op 5 1/0.000 + CDS 29349 - 30362 1083 ## COG0673 Predicted dehydrogenases and related proteins 27 10 Op 6 . + CDS 30376 - 31134 920 ## COG0561 Predicted hydrolases of the HAD superfamily + Term 31146 - 31189 10.1 + Prom 31216 - 31275 12.5 28 11 Tu 1 . + CDS 31383 - 32702 1170 ## Tthe_2617 S-layer domain protein + Term 32747 - 32800 12.2 + Prom 32823 - 32882 6.9 29 12 Tu 1 . + CDS 33042 - 33554 25 ## COG4304 Uncharacterized protein conserved in bacteria + Prom 33611 - 33670 6.1 30 13 Op 1 . + CDS 33693 - 34184 -58 ## Pjdr2_4920 hypothetical protein 31 13 Op 2 . + CDS 34200 - 34346 61 ## 32 13 Op 3 . + CDS 34352 - 34507 63 ## + Prom 34813 - 34872 4.2 33 14 Tu 1 . + CDS 34917 - 35132 127 ## + Term 35153 - 35190 -0.9 + Prom 35140 - 35199 5.8 34 15 Tu 1 . + CDS 35363 - 36223 1001 ## + Term 36441 - 36482 4.2 - Term 36435 - 36464 0.4 35 16 Tu 1 . - CDS 36471 - 36875 201 ## Pjdr2_4145 hypothetical protein - Prom 37017 - 37076 5.5 + Prom 36981 - 37040 6.9 36 17 Op 1 . + CDS 37080 - 37853 842 ## gi|304408441|ref|ZP_07390086.1| hypothetical protein PaecuDRAFT_4766 37 17 Op 2 8/0.000 + CDS 37858 - 38223 376 ## COG1725 Predicted transcriptional regulators 38 17 Op 3 . + CDS 38251 - 38970 202 ## PROTEIN SUPPORTED gi|225088774|ref|YP_002660041.1| ribosomal protein S16 39 17 Op 4 . + CDS 39041 - 39715 723 ## COG1802 Transcriptional regulators 40 17 Op 5 . + CDS 39722 - 40699 1000 ## BATR1942_00160 YjlA protein + Prom 40806 - 40865 3.3 41 18 Op 1 . + CDS 41019 - 41495 438 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 42 18 Op 2 . + CDS 41497 - 42132 617 ## COG0406 Fructose-2,6-bisphosphatase + Prom 42147 - 42206 2.5 43 19 Tu 1 . + CDS 42386 - 43570 1277 ## COG0498 Threonine synthase + Term 43583 - 43625 9.1 - Term 43627 - 43660 4.5 44 20 Op 1 . - CDS 43700 - 44023 416 ## COG1226 Kef-type K+ transport systems, predicted NAD-binding component 45 20 Op 2 . - CDS 44186 - 44806 836 ## COG2357 Uncharacterized protein conserved in bacteria - Prom 44878 - 44937 5.4 - Term 45004 - 45035 -0.9 46 21 Tu 1 . - CDS 45051 - 45668 484 ## Tthe_0524 DNA polymerase beta domain protein region - Prom 45799 - 45858 3.4 - Term 45776 - 45818 7.2 47 22 Op 1 . - CDS 45893 - 47635 1523 ## COG0642 Signal transduction histidine kinase 48 22 Op 2 . - CDS 47669 - 48751 991 ## COG5012 Predicted cobalamin binding protein - Prom 48819 - 48878 4.6 + Prom 48775 - 48834 3.8 49 23 Op 1 7/0.000 + CDS 48972 - 50732 1656 ## COG2972 Predicted signal transduction protein with a C-terminal ATPase domain 50 23 Op 2 2/0.000 + CDS 50729 - 52339 1726 ## COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain + Term 52511 - 52555 8.5 + Prom 52600 - 52659 7.9 51 23 Op 3 . + CDS 52683 - 54008 1579 ## COG1653 ABC-type sugar transport system, periplasmic component + Term 54032 - 54062 3.3 + Prom 54140 - 54199 2.6 52 24 Op 1 38/0.000 + CDS 54380 - 55258 1047 ## COG1175 ABC-type sugar transport systems, permease components 53 24 Op 2 . + CDS 55278 - 56171 1217 ## COG0395 ABC-type sugar transport system, permease component + Term 56183 - 56246 15.1 - Term 56178 - 56224 14.4 54 25 Op 1 . - CDS 56242 - 56592 134 ## - Prom 56612 - 56671 7.2 55 25 Op 2 . - CDS 56698 - 56931 141 ## - Prom 56977 - 57036 5.5 - Term 57025 - 57090 18.3 56 26 Tu 1 . - CDS 57193 - 57309 129 ## - Prom 57465 - 57524 6.1 + Prom 57498 - 57557 7.6 57 27 Op 1 . + CDS 57670 - 57945 329 ## PPSC2_c4266 hypothetical protein 58 27 Op 2 . + CDS 57953 - 59446 1274 ## CA_P0138 hypothetical protein 59 27 Op 3 . + CDS 59490 - 60575 891 ## Ccel_2514 hypothetical protein 60 27 Op 4 . + CDS 60547 - 61722 1161 ## COG0535 Predicted Fe-S oxidoreductases 61 27 Op 5 5/0.000 + CDS 61783 - 62766 1069 ## COG4586 ABC-type uncharacterized transport system, ATPase component 62 27 Op 6 3/0.000 + CDS 62799 - 63572 811 ## COG4587 ABC-type uncharacterized transport system, permease component 63 27 Op 7 . + CDS 63585 - 64388 886 ## COG3694 ABC-type uncharacterized transport system, permease component + Prom 64527 - 64586 4.1 64 28 Op 1 . + CDS 64619 - 65644 858 ## COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases 65 28 Op 2 . + CDS 65663 - 67321 1336 ## COG1472 Beta-glucosidase-related glycosidases 66 28 Op 3 . + CDS 67281 - 68324 916 ## BCG9842_B3389 hypothetical protein 67 29 Tu 1 . - CDS 68495 - 69052 593 ## - Prom 69248 - 69307 4.3 - Term 69370 - 69408 9.3 68 30 Tu 1 . - CDS 69436 - 69915 450 ## gi|167461934|ref|ZP_02327023.1| hypothetical protein Plarl_05160 Predicted protein(s) >gi|333608568|gb|AFDH01000012.1| GENE 1 2 - 1301 1001 433 aa, chain - ## HITS:1 COG:CAC0784 KEGG:ns NR:ns ## COG: CAC0784 COG0513 # Protein_GI_number: 15894071 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Clostridium acetobutylicum # 5 370 3 366 374 380 51.0 1e-105 MSFPFIDLGVRPELAKLLARSGVSDPTPIQQQALPVVFRGGDVIAQAQTGTGKTLAFLLP MLERTNPTRAEVQGLILTPTRELAIQIAAEAAKLAPSLGINVLAAYGGQDVEKQLRKLSS TGGVHLIVATPGRLLDHLRRGSVALYKISMLVLDEADQMLHMGFLNEVEEIIAQTPQRRQ TMLFSATMPDPIRNLAKRYMVNPEEIRVKAKQVTLTEIDQSVVRVSDRGKLDALCRAIDT DKPYLAMIFCRTKRRAASLNADLQERGYKSDELHGDLSQAKREQVMKRFRDASIQLLVAT DVAARGIDVEGVTHVFNYDIPHDAQSYIHRIGRTGRAGQTGVAVTFASPRDQVYVDQIEQ GIRQQLRRQDAPRRERGEETDERRERGGRSPRGERNFGGGDRAKPAGKGGGRSRGGDGAG RSEGRWEHRTDGP >gi|333608568|gb|AFDH01000012.1| GENE 2 1473 - 2147 544 224 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_5305 NR:ns ## KEGG: Pjdr2_5305 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 27 211 27 212 249 105 33.0 1e-21 MNKIMRRFIPALSAAGFIIVTVSGCTNTYPKETSYGHPKQRIEGKGQSRAYQTQQQVSAV SHNNTFFAYDHELSTQIAAMHGVMGAIVMRTDRNAYAAIMVDNSASGTKAGRSETKTHGP GDMKNQIPQPYYENLYTNELASDFLGYVTVQDHKNLSHNFKQEIALKIRQLDPTVHDVYI SANREFINQLNHYKLDALSGASLKPYVNEFNQGATRIFGTKPQP >gi|333608568|gb|AFDH01000012.1| GENE 3 2444 - 3442 823 332 aa, chain + ## HITS:1 COG:BH2615_1 KEGG:ns NR:ns ## COG: BH2615_1 COG1622 # Protein_GI_number: 15615178 # Func_class: C Energy production and conversion # Function: Heme/copper-type cytochrome/quinol oxidases, subunit 2 # Organism: Bacillus halodurans # 1 234 1 236 236 230 49.0 3e-60 MSRWKKNWRLVPLFAVMTFLLAGCGDPTLSALRPRGPVASEQLFLMKISIAIMLLVVVVV FALYLFVIIRFRKRKGQEGIPKQVEGNHVLEIVWTVIPILLLIVLAVPTVYYTFKHTTNY VQDKDAIHVKVTAHQFWWQFEYPELGISTAQDLVIPTGKNIALELTSADVTHSFWVPSLG GKMDTNTNMTNVYYLKADDVDVFKGKCAELCGASHSLMDFKVKSLAQGDFDAWVTNMQTP AAVPADAKQGEELFKQKCLQCHAIDPKGLGFGPNLNGYADREMLAGVLDHNDENLKKWIK DPQSEKPGTLMPKVPLEDNQVNELVKYLNSLK >gi|333608568|gb|AFDH01000012.1| GENE 4 3472 - 5361 1445 629 aa, chain + ## HITS:1 COG:BS_ctaD KEGG:ns NR:ns ## COG: BS_ctaD COG0843 # Protein_GI_number: 16078554 # Func_class: C Energy production and conversion # Function: Heme/copper-type cytochrome/quinol oxidases, subunit 1 # Organism: Bacillus subtilis # 18 628 11 621 622 771 65.0 0 MAQAHAHAHAHAHHQVKRYTGLMDWLTTVDHKKIGILYFMAGGLFFLIGGLEAILIRIQL MNPDLKIFIGDTFNQLTTMHGTTMIFFAAMPMIFGFMNAIIPLQIGARDVAFPFLNSLGF WLFLFGGILLNLSWFMGGGANAGWTAYAPLSSIVDSTKAITVGGNITGVDFYVLGLQIAG LGTLLGGINFLVTIINMRAPGMTYMRMPMFTWASFITSALILFAFPAITVGLVELMFDRI FDGAFFDPARGGSTVLWEHLFWIFGHPEVYILILPAFGIISEIVSTFSSKRLFGYSSMVF ATALIGFLGFMVWVHHMFTVGLGPVANSIFSIATMAIAVPTGIKIFNWLFTLWGGQIRFT TSSLFATAFIPTFVMGGVTGVMLSVPAADFQYHDTYFVVAHFHYVIVGGLILGLFAGSYY WWPKMFGRVLNETLGKIHFWTFFIGFHLTFFPQHFLGLMGMPRRVFTYDPGLTAGNLVST VGAFLMGIGTLVFIINMIATNRKPQDAPNDPWDGRTLEWTIPSPAPEYNFKQTPLVRGLD ALWKEKMAGNKEMTPAEPVGSIHMPSPSILPLFMALGLFISAFGFMYHIYVICIVGIGIT LLCMLLRSVFDDHGWHIEPEELNDKGVKR >gi|333608568|gb|AFDH01000012.1| GENE 5 5358 - 5978 592 206 aa, chain + ## HITS:1 COG:BH2613 KEGG:ns NR:ns ## COG: BH2613 COG1845 # Protein_GI_number: 15615176 # Func_class: C Energy production and conversion # Function: Heme/copper-type cytochrome/quinol oxidase, subunit 3 # Organism: Bacillus halodurans # 1 205 1 206 206 224 62.0 6e-59 MSTQTHDAGTLPLEPEKATLEGKNKVLGFWLFLGGEMVLFGTLFATYIALRNQIPEGPTP MELFKLSTVAWATFILLTSSLTSVFAIMAMHKNNVKGLLFWLAITVLLGLGFLGLEVYEF YEYVHEGHGFTTSAFSTSFYTLVGFHGGHVAFGVLWITLLIIQGTRKGLTVVTAPKFYVA SLYWHFIDVVWVFIFTVVYLMGKVGP >gi|333608568|gb|AFDH01000012.1| GENE 6 5980 - 6291 264 103 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_5301 NR:ns ## KEGG: Pjdr2_5301 # Name: not_defined # Def: cytochrome c oxidase subunit IV # Organism: Paenibacillus # Pathway: Oxidative phosphorylation [PATH:pjd00190]; Metabolic pathways [PATH:pjd01100] # 1 103 1 105 105 94 46.0 2e-18 MSTNETTSPSKRYKKESPANHYFSYIASILLTMIAFALVMYGGLDKSFLYAFLIFMALIQ IALQLAYWMHMKEKGHLFPIVGIIFGGIVALTAVAAGVYWTWW >gi|333608568|gb|AFDH01000012.1| GENE 7 6393 - 7220 806 275 aa, chain + ## HITS:1 COG:BS_ctaG KEGG:ns NR:ns ## COG: BS_ctaG COG3336 # Protein_GI_number: 16078557 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Bacillus subtilis # 2 261 8 286 297 178 37.0 1e-44 MGFFEMWNPVVLLFVVVVGLVYRSLTSPSKAAAAGEEPVSSKVKLSFYTGIALFYIGQGS PINYLGHHYLFSVHMLQQSLLYLIMPIFILNGLPAWLIRPLFKGTVMNRLLRFFTHPLIS VLAFNLLFSIYHLPLIMDTLMENEWMLLGYHGILLFTAFAMWFPVFTPLPEHEKLSSLMK LAYIAVNGILLTPACALIIFASEPIYAMYANVVIPFNALPLLDDQQLGGVLMKVIQEIVY GSALAMIFFKWYRTERAQEDELSDDPQGNNGLTTA >gi|333608568|gb|AFDH01000012.1| GENE 8 7275 - 7730 351 151 aa, chain + ## HITS:1 COG:SA0966 KEGG:ns NR:ns ## COG: SA0966 COG2322 # Protein_GI_number: 15926702 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 3 150 5 152 153 144 57.0 5e-35 MHVLPTISTMFIVISAIFVAFGWYQIRKGNRETHTKLMIAGAISALIFFTIYMSRTIFQG NTSFDGPESLKLAYHIFLFFHITLATVGAVFGIVTLILAFKKNWIRHRKVGPITATIWMF VAPTGVVVYILLYILFPGGETKPLIDAIFGL >gi|333608568|gb|AFDH01000012.1| GENE 9 8069 - 8806 426 245 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|253574582|ref|ZP_04851923.1| ## NR: gi|253574582|ref|ZP_04851923.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786 str. D14] conserved hypothetical protein [Paenibacillus sp. oral taxon 786 str. D14] # 1 242 1 239 240 65 23.0 3e-09 MSVWSNVWWLAKQDLKMVRYGYIWSLLYYLNAMFVLFVFMKPEISMHGEVNGFLTVVFNL FVLSIIQVVGYPIDTRNMNYWKNDAYTKRILQLKMLPVTNKEIVTSRFLVYILYSSFFIL LLHVGIRVMMSLQWVDPVGWGTWLGMIFFWWGAVLAVGSFYLYGELSMRGKVFFRFSLLM LLATLIFSILLWWTGNYMVWPLVISSVERYGVIVPACSVIIGATALGISWKILGRKIGHR DLFAS >gi|333608568|gb|AFDH01000012.1| GENE 10 8858 - 9376 482 172 aa, chain + ## HITS:1 COG:BH1164 KEGG:ns NR:ns ## COG: BH1164 COG1725 # Protein_GI_number: 15613727 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus halodurans # 1 115 1 115 135 109 50.0 3e-24 MHIPIQISPDNPEPLYHQIQVQLKELILSGHLPEGTLLPSIREFAKDLSCSVITIRRVYQ DLENEGILRTRQGTGTFVAKVGTVTREQYRKEAVVEAMKDALRSGLRVGCTIEELKQLFE EALLEITNEGQGTPENRQPGTNNPQNIGSTNTEVPGLAKAAVEPEEGGSGNE >gi|333608568|gb|AFDH01000012.1| GENE 11 9369 - 10313 804 314 aa, chain + ## HITS:1 COG:BH1165 KEGG:ns NR:ns ## COG: BH1165 COG1131 # Protein_GI_number: 15613728 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Bacillus halodurans # 18 306 9 283 285 150 33.0 2e-36 MNREAGRYGDCAIRLSGVDKMLGDMRLGPLELEVETGTVVALVGQNGSGKSTIFRMLMNL TKADSGKVELLGRLYGEDDTETDIKRRIGYVPEESSWEELGCTTIGELHDFVCRWYPTWN ETLYRGMMEEFELSGKLKLKTLSKGMKRKLSYILAAAHEPELLLLDEATSGLDPFATKRM IEHLVKFMEREGRSIFFSTHVMEEVRRLADYIVYINRGRLIGVYEKDQLLDDWKRIWVRE TPQPASGPLPGVVSMGTGEHGGLIPIISRSSSETEAALASQGNLPVRTTAMELEDILELL TQEKIAKKAENKER >gi|333608568|gb|AFDH01000012.1| GENE 12 10353 - 11255 279 300 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225084369|ref|YP_002657150.1| ribosomal protein S16 [gamma proteobacterium NOR51-B] # 4 258 9 267 309 112 26 7e-24 MLPLELEQVTKQYGEKTAVNGISLQVKPGEIYGLLGGNGAGKTTTMRMSLGLIYPDGGTI RWNGKGYGDELRRLMGYLPEERGLYPKYKVSEQLIYLAELRGIKRKQADRTLKEWLAKFE VPEYYDKRVEELSKGNQQKIQFIASVLHDPSIIIMDETFSGLDPVNVELLKGTVKELRDK GKAILFSSHRMDHVEELCENICILHKSNTVLQGNLREIKQSFPKERVLLETKEAVPGLET IEGVTSVEKHLNGYEIRIREAGAAQRILAHAAAATDIYRYQLMEPTLNEIFIAKVGSSHE >gi|333608568|gb|AFDH01000012.1| GENE 13 11248 - 12564 1460 438 aa, chain + ## HITS:1 COG:BH1167 KEGG:ns NR:ns ## COG: BH1167 COG1668 # Protein_GI_number: 15613730 # Func_class: C Energy production and conversion; P Inorganic ion transport and metabolism # Function: ABC-type Na+ efflux pump, permease component # Organism: Bacillus halodurans # 1 433 1 418 425 244 35.0 2e-64 MNSMLTVIRFTLLNRLKTKSFKITTLIFVLLISAVVNLPAIIQQFSKEDGKEAVKIGVMA NGTDIQQKLTDYFAAAKTGTSAVEIVPLESKGGAEADAALIREKLKNEDVKGVLTAKPAG AGEFPQLLYQTGASGFSMNPGTDETAGLLKTALQTIKTNSAIAQAGIEPAVLAKIQEPVK LTTETVALKEAETPAKSKEELGIAFILVYALLFLLYMSVIGYGSMVSTEITAEKSSRVME ILISSGSPLKQMFGKIIGICLMGLLQNVVFGIVVAVNLTLPWNGAALQSMDLDLSLIPYG LLGYFLLFYLGGFFIYATIFAAIGSLVSRSEEVQQAVMPVTLLIIIAFMTAMFGLQNPEA PFVIAMSYVPFFSPLIMFLRIGLGSPAWWEITISIAIMLGSIFVLGWLSAKIYRTGVLMY GKRPSWKELRKAMKAFQA >gi|333608568|gb|AFDH01000012.1| GENE 14 12664 - 14046 1275 460 aa, chain + ## HITS:1 COG:VC2220 KEGG:ns NR:ns ## COG: VC2220 COG3735 # Protein_GI_number: 15642218 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Vibrio cholerae # 186 457 29 285 298 86 26.0 9e-17 MKSHLWSKWSRKTVAGVLGVTILLGGTNLTVRAEQAPAPTPSISTWSLSTLNEGEKYGIY PTGWYYDGKFQQAIDAVKFKSLIESTAAKLDQLGFSKKDLPLPASENKGITRDTVMRAMH GLLARYELPVAFGIGSSSPIEYLQQKGIVQGSSEGLELDQPCTAEQAAVLASRLVEFSYD TAGQGAKGVFWKVKHNNNTLYLLGSVHLGIPEMYPLQKNIREAFEASDDLWVEADTLSGD MSYFANLMVYDDGTKIQDHVSKETYEKMQKVLGKMELPEQAFDEYKPFAVSSNLSMLSLF DRPEQITAASASGIDHYFLTKALLTGKPVHELEGIKLQADVFNSLTPEAQEKDLNSLLDT LLADGGKEGADSFKQLQLDWSKGDAKGVVDGLVRGGLMEGELNKKLIGERDKNMAKKIAD LLEQDGESTSFVVVGSAHYVVKDMVIDQLKAKGYDVQPVK >gi|333608568|gb|AFDH01000012.1| GENE 15 14134 - 16188 1062 684 aa, chain - ## HITS:1 COG:CAC2808 KEGG:ns NR:ns ## COG: CAC2808 COG1680 # Protein_GI_number: 15896063 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Clostridium acetobutylicum # 26 681 83 734 739 544 44.0 1e-154 MKKMVSVLMTTMLLTVPVTSAFAQTTQDPVKEKAKVLASKIVSDYGASGIQYAIRDHGSV VLSGGAGLKDKAANNPVTKDTMFGIGSVSKVYITAAAMKLADTNQIELDKPLTTYLKDFK MADERYKKITPRMLMNHSSGLYGSHYENGFLFDDNDTKAHDELLTKLRSEHLKADPGEFS VYCNDGFQLLEILVERVTGLSYSEFLNKHFSKPLDLNSTKTPRDTFDRNKLAKTYAPEND QALPVENVNLIGTGGIYSTAEELSKFGDVLIGNRTDILSEKSAKAVQSHEYRKGLWVPEE TNTINYGLGWDAVKLAPFDDYGITALSKGGDTQMYHANLTTLPEHDISVAVLSSGGSSTF NSIMSSNILLEYLKTKGIIKEILPAKTFQPAVKVDMPSELRAYSGLYGSTGKTVNLEFKN GEVDFPALFGGLVPAQKYVYTGNRQFKNRDGNLTLSFDQAKNGNTYLKLNAYLNLPGLGQ TVMVTYEYQKLDANPLDQTTKKAWEQRNGKKYYALDEKITSVGYGNQALLAREITVNADY GYASGTKIVNPNKAVNVTAVPVINGRDSFDLNFYKKNHTEYLTIDGQSYIHEDGIQPFSQ GSSAIRSIPSNGQAVWYKIDKKSAGRTLTVKAPASGGFAVYDAKGKLVNFSKISKNYSAL LPEGGLIVFGGHAGDVFKIDWKNK >gi|333608568|gb|AFDH01000012.1| GENE 16 16310 - 17569 606 419 aa, chain - ## HITS:1 COG:lin0802 KEGG:ns NR:ns ## COG: lin0802 COG2972 # Protein_GI_number: 16799876 # Func_class: T Signal transduction mechanisms # Function: Predicted signal transduction protein with a C-terminal ATPase domain # Organism: Listeria innocua # 73 412 87 431 433 84 24.0 5e-16 MVVVMAVQINFFFNSVFDKTTHKRNRIIYFLIFGLLDYLYLVTSLSPALSSIVSLLLIFT IAHSYQVEFRMKIIFSLLYGVLMSISNTISLYILYTLDNVEFDTLDLVTQPAAQIPYTKL IFLSCMIMFVVIQIIRLIAKRRSFSLPYRYYVLFLVIPLLSFYHLNILTYKSFYSFLSAI GFLFLNVMIIYIFDTIMDKFQFMHENAQLQQQMDYQDANYEKVVHSFKSIKRIIHDTNQQ FLYIEECIKRNEPAAAVEHIKTTLNKVEGAYQRVNTGNLVIDALVTNALDIGQANGIRID TKLNLRSQEIPIDRYDLCVVMGNMLDNAIEASKHIKIAEDRYILIKIHATESALLIHILN HMEKEDARLHSQKPNPEFHGIGLTNIARICDKYGGHMTLETKHKQFNNMVLLPFLTNNP >gi|333608568|gb|AFDH01000012.1| GENE 17 17589 - 18344 511 251 aa, chain - ## HITS:1 COG:CAC1581 KEGG:ns NR:ns ## COG: CAC1581 COG3279 # Protein_GI_number: 15894859 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Response regulator of the LytR/AlgR family # Organism: Clostridium acetobutylicum # 1 241 1 230 234 85 26.0 1e-16 MYRVAICDDEEKQRELVKNILIALSIKSNIQFEIELFSSGEQLSAYYERQETPFHILLLD VEMGGINGIQTARRIRELNNLDEQIIFLTGYPEYMVESFDVMTFQYLIKPVAPMVLEEKI IKLCQYFQALDKKFMVIKSAYDEVVIKYDDLISIEAAKSLTIKSKLHFTTVNQTYESKGT ISDYALALKDHKFLQIHRSIIINLLHVRKFAQGVVLMSNGMELPIGRSKVKEVKDVYTKF MIMKVDGYDSN >gi|333608568|gb|AFDH01000012.1| GENE 18 18491 - 18772 103 93 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKPNPLTPAERASQVERKQPPRLTNEEYKLRHHAPVQVSCAFSSLSFRKKKAAYLKGSER FQAFGGFICSSKSCEDTEQWLDAGEAYRSLTAI >gi|333608568|gb|AFDH01000012.1| GENE 19 19053 - 23123 3916 1356 aa, chain + ## HITS:1 COG:BS_yvnB KEGG:ns NR:ns ## COG: BS_yvnB COG1409 # Protein_GI_number: 16080557 # Func_class: R General function prediction only # Function: Predicted phosphohydrolases # Organism: Bacillus subtilis # 50 1178 151 1270 1289 818 41.0 0 MNKKLFTSCFTCFMAIQLAAGSSLAFVRPAAAEEAGTPAAVSSAAASAAPRMLITEIVPD SGGDTEAGEDPYEYLEVYNNSDQPVDFKDYSILYRYPGEPGKDLFWRPYTDQQIVIPPGK AIVFWAVTPAGETKTVADFNAHFKTSLTENKDIVRIPGGLNNLRERTIVVATNTGRDIVR ASYNQGVLETAADMSIEYGTPDAGSLDMKKLSVLQQKATPGTFDPAHVPAEPVRIAADPV APTVRDVTDTSGIDLISPIELTAEAEDDRLLASVNLYYKSNKTADYKKVAIPPGKDGKFR YSVEMMEWFGSPSLQYYFEASDTFNTAATAPRTLSLAGSEKSPALNVRDGETLSGSRVLI GSSAAAVGPMTLTVDGQAVSPTAKALEKTAYFVFEADDIDKGQNVVTMGADTLYLIPFGT QDYKTMVVPVRPELFKYGQANPIAIRAGSVNRPYYEDKPETGLDDFNIRNVRLVLADGTV VKDPKYANPATILDMGDNGRFLPVVTFNFAVPESYWKGISYRWDTAASADGAHKVEVKLP DGSKASADVTVDNQGPVLTTNIEEGKSYKGPFDIRASASDAASGVKSFEVKLDGKLIRVP YAASSASLPPGGHTLLLKAADAGGKTTEKTVKFTTLEELPHKPVLLSPAEGTQDADGNVS LEVSVSDPTGDPLNVKFFKGKRITAGDPGMTAYSHAADIEPPAALSLPGETPFSPEDMAS AGTSDDRYVTTDSDGQFPYQRFEVEVGGETGAGDRIELNWEGHSLKGRKVSLYAWNYGTE KWDSLASMVAPSEEDFTLSAAADAFPYARNGKVQAMIQDEIPRRDQYDFTFVSMPDTQIY AEILPQYFESQVNFIRGAKDDMNIKYVMQVGDIVNSAGIKGQWERVDKFMNVLDEANIPY GVAAGNHDVFDGGANSEPDYSEFSKYFGENRFKDKPYYGGSYKDNRGHYDLISAEGNDFI FVYMGWDMSDEDFAWMNGVLKEHPDRKAIIVVHEYLQNNGNRSATGNRIYENVVVPNPNV KMVMSGHFTGSALRTDQLDDDKDGTPDRKVYQILNDYQGIPNGGDGYLKLMHFDTSTDTV YVNTYSPYLDDYNYYDPAKDEFKLSMDLKPMTKRVATDKLEVNVYSDELIGEVEASSGST AKTVWGPLNGNTVYQWYATAEDAFGGRTYSDIGTFRTRLALSAPQEVKVSGVTADSARIS WNPVAAPGDSSSVTYEVYGPQGLAATVAGSVYAFTGLEPDTAYTFTVRAVHESGVVSDMS LPVTFTTSMDLPALQAGLQRFIAAGQVTSPLTNQLDNALKQAAGHLQKGQSGQASKKIED FLKHLGSKAHQDAAAPEARQWLHLKAQALLRVWAAE >gi|333608568|gb|AFDH01000012.1| GENE 20 23341 - 24513 1124 390 aa, chain - ## HITS:1 COG:BH1094 KEGG:ns NR:ns ## COG: BH1094 COG1940 # Protein_GI_number: 15613657 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulator/sugar kinase # Organism: Bacillus halodurans # 7 381 5 398 407 143 29.0 6e-34 MSTSKHASHTLLKSINQQKVLHLIYSDSPISRVELAQKTGLSQQTVTNIVNRLLEDEVIL EGEPQSLESGSGRKRVPLLLNGSRFSAIGIELSGTYARGAAYNLRKERLAEAEMRADSYE TEEDMLRVIRQVIGALIKEIPEPDGIKGISFSVHGLVDSSEGILLRSPGMGWKRVPLGRI LEEKYGLPVYLENDTNLLALNENISGRLVSSRNNVTLKLGRGIGGAIFVDKMLVTGSGSV AGELGHYKAFLPPHLHDCYCGGKGCLTTLASSHGLKRTLGLTVDQFSSALLAGEPQAVEL REAVKTAIVSALSNIVTMLNPDHIALTGTMLPVFGDSFLDELKDRVLANVPQTCRDLEFV HLRTTEEDTVLAIERVLQNLFKIPLDSLSL >gi|333608568|gb|AFDH01000012.1| GENE 21 24751 - 24834 61 27 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGKTGKLLEAGIGELFSDLRILWYNNK >gi|333608568|gb|AFDH01000012.1| GENE 22 24877 - 26331 1525 484 aa, chain + ## HITS:1 COG:BMEII0625 KEGG:ns NR:ns ## COG: BMEII0625 COG1653 # Protein_GI_number: 17988970 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Brucella melitensis # 129 483 107 444 444 67 25.0 8e-11 MRPNMKRLTSLSLAVVLSGSLLAGCAGGSDPKNEGGQASPQSSGEVYENGLPKNEKVTLK VGFFMGGYGREWFDYAVKSFKEKYPNVSFDVTASADMKNMIQTKVSANNDADMFDIFNTT PPAGAQGIVSLAEAGKLEPWDELFDKKLPDAPDKTVKELILPGMYESFTRVNGKVYEFAS SSSFGGLFYNKTLFEKNGWNQNPKTWSEFTKLLADIKATGIAPITFPGVHPNYYDWAFGP AKMFELADMKGGADKFIENYKTYTGPQYLSEESIEHWNRLYELGKQGYFPEGLPALTHTQ SQMQVIQGQAAMVSTGSHVENEMKKTTPADFKWGYMAVPFRDKADQKLWVRSGITNFLYL WSGKPDLNKKWSKEFALWLLTLENQQFAAEKSGALPMRKDLTDDSSKVLKLSSSAQAILN YIKENDARAYKAHRTVSISDPNLAKAVKIVEEATVKIVLGKQDPKPILEEAEALLQKAVA AQKK >gi|333608568|gb|AFDH01000012.1| GENE 23 26396 - 27343 1130 315 aa, chain + ## HITS:1 COG:BH3681 KEGG:ns NR:ns ## COG: BH3681 COG1175 # Protein_GI_number: 15616243 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Bacillus halodurans # 50 290 31 266 293 144 35.0 3e-34 MSDPIAVKAPRSFISRTGLDKAKTQKWIFLILAIVPPFGGYLLFTLFPNVLSVYYALLDW DGLKEPEFVGLKNFVTALQDEYVWRALRHNVIFMLTVPALVVLISLVLAYLVTYKTYREN KLLKILFFFPNVLSIVVVALLWAFIYDGTYGLLNGALGLLGIDLKNFYWLGSENTALWAL IPPWVWGGVGLYVIIFVNAMTAIPKSLYESAILEGAGHMTRLFKITLPLIMPVVRVSVLF LVVSTLKTFELILIMTNGGPSGSTDVIGLYMFNLAFGKEYINYGYASSVGMILFVILVTA KLLMDKFLPNRGVEY >gi|333608568|gb|AFDH01000012.1| GENE 24 27374 - 28210 1085 278 aa, chain + ## HITS:1 COG:YPO1721 KEGG:ns NR:ns ## COG: YPO1721 COG0395 # Protein_GI_number: 16121981 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Yersinia pestis # 20 278 46 306 306 161 33.0 1e-39 MKEKRTFMDVVWRLCLYAWALTIIFPLCWVFYESLKSNPEFFQNIWSLPSKLEWSNYKTA WTEYGFGKSLLNTLYYVGGSLVVSLIFTTLNAYALTRLEFKGRQVIWGLIMLSLFLPGIN ALVPQYVIMRELHLTNSLTGLILLSALGESVFYLMLLGGFMKSLPKDLEESANMDGASIF QVFLRIIVPLSTPGIVTVAIFKFLGYYNNFMGPFIYLSDPEKYTIAVQMYQANKMMEYTA DWVTLFAGVTIAMVPSVIVFILFQRLIMQGATLGAVKG >gi|333608568|gb|AFDH01000012.1| GENE 25 28310 - 29362 872 350 aa, chain + ## HITS:1 COG:PH1881 KEGG:ns NR:ns ## COG: PH1881 COG0673 # Protein_GI_number: 14591627 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Pyrococcus horikoshii # 7 336 34 369 371 157 30.0 3e-38 MELGECQVKVAVIGCGTMGRTHAAEWKRMPGIRLAGVCDAQEGAVRSLAGRLETEAYEDF DRMIGEADPDIVDICLPTHLHKEFIFKAARTGRHVICEKPIALSADEAEEAAAECKKQGV RLFIGHVVRFFPSYADIRRKAAEGTIGTPAVLHAKRMGANPGLAKPWYANSDKSGGVILD LMIHDIDFAQSLFGRAVSVYAMNRREGNTDYALATLRFGGGEIAHLEAYWGFPGPFTTGV ELAGTGGVLRFNSENAVSLRVFKAKETASGSGVAAAVPVPKSPSTYNPYYLELAHFADCV RTGREPEVTVEDACSALRTSLAVIESARTGRPVKLKDINAREGENRHVYR >gi|333608568|gb|AFDH01000012.1| GENE 26 29349 - 30362 1083 337 aa, chain + ## HITS:1 COG:PAB1139 KEGG:ns NR:ns ## COG: PAB1139 COG0673 # Protein_GI_number: 14521934 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Pyrococcus abyssi # 4 328 2 333 335 175 31.0 1e-43 MSTVNIGMISFAHGHAAGIYRLLHNIPGVQVTAIADESEARVREYLEEAPGIRYYADYRE LLADDCDAVVICSENIRHAEMTVAAARAGKHVLCEKPLGLNVDEMERMIQACEESGVRLM TAFPCRFLPAVIQAKTAVDRGEIGDILAVKGTNRGTMPGGWFVDPALSGGGALLDHSVHV LDLLHWMLGSHVTEVYAETATLFHDIPVEDTGFLHVKFESGVFASIDTSWSRTRSFPYWG DVTLEIVGTEGMLSVDAFGQKNEVYSDGADKARWSHWGENMNRTMVEAFIVSVREGKEVP VTGRDGLRSAAVAAAAYESVRRGEPVALNEHGRYSVE >gi|333608568|gb|AFDH01000012.1| GENE 27 30376 - 31134 920 252 aa, chain + ## HITS:1 COG:BH0497 KEGG:ns NR:ns ## COG: BH0497 COG0561 # Protein_GI_number: 15613060 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Bacillus halodurans # 4 244 5 244 247 187 45.0 1e-47 MSAYKLVALDLDGTTLTDDKRISEVNRIWIRRATEAGVTVIFSTGRGIQTAKSYWDELRL DVPMVLLNGAEIWKGPGRLWERHYLSRQQIRELHKLAVGADAWYWGYSVESLTNREEWTE EMFDRDWMKFGMGHHDLPTIAGLREQVRQMGMLEVTRSADTNMEISALGVTKESGVRKVC ELLGVGMHEVMAIGDHHNDRMLIQAAGLGIAMGNADAELKEAADAVTGTNGEDGVAQAIQ QYIFGLDAVPEE >gi|333608568|gb|AFDH01000012.1| GENE 28 31383 - 32702 1170 439 aa, chain + ## HITS:1 COG:no KEGG:Tthe_2617 NR:ns ## KEGG: Tthe_2617 # Name: not_defined # Def: S-layer domain protein # Organism: T.thermosaccharolyticum # Pathway: not_defined # 1 203 1 205 479 178 44.0 4e-43 MKTSKGLRKKMAVTLLACTVMAPAQLSWAASASAASDISGHWAEQQTKQWVDKGYIQGYA DGTLKPDKAVTRAEFVSLVNRSFKLEAQGTASFKDVAASDWMYGEVAKAVQAKYIEGYPD GSFRPNASISRQEAAVIVARLLNKTAAQSETAAAFRDQSAIASWGSSAIAAVVSSGVMSG YADRSFKPDAPITRAETIVTLQRAAGETTAPTETTGPGPEETAQLAEGTIAITGPDSVKL TDESAQSISFEAAVKNKNGEAVKDAKVVWSLEFANDHQRWNDEEGSSYGITIDPATGKLN VGWYSWIEDFKVVAKLASDQSVVGSKTVHASQGNIKSVLASNGTVQFVFFEEPKVEDDGY GGKFRADIDSISIAQEDLQDPSQYKELEITKTDYDPATKTATFHFNPIAAAAEKQGVYLS IGYIESTYISGAYFVIPAK >gi|333608568|gb|AFDH01000012.1| GENE 29 33042 - 33554 25 170 aa, chain + ## HITS:1 COG:YPO2489 KEGG:ns NR:ns ## COG: YPO2489 COG4304 # Protein_GI_number: 16122710 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Yersinia pestis # 6 166 2 165 167 86 30.0 2e-17 MNSLNISLPYDYVTNLINLTWSDLLFAVEQGYMSREAAVEHAINIVGKEKEKTHQKVLEL ACLTNEESNFWYIDELLNQIYEQDGSSSRDKFLFLLLNWIFEHKELYLDPLEMVENIYAD FNYPEKISEFVRYMPSKRTITSLVKLNTAYLYNRWKEFLEQERVKYFLAE >gi|333608568|gb|AFDH01000012.1| GENE 30 33693 - 34184 -58 163 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_4920 NR:ns ## KEGG: Pjdr2_4920 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 7 123 6 122 160 90 48.0 1e-17 MEIIDSLKEEVSKNNIEEASSIVEKIGDSKLIEAVPILINTLLDTESNQLRNTIAIALSD IGCDDAVVPIISLLKSPKTQNSRGTLLYALESFDCSDYGELITELLIEGNFEVRWQSISL LRINVKNMSAALKHNCRTKLQANLSNTIADEELQEALEILGSC >gi|333608568|gb|AFDH01000012.1| GENE 31 34200 - 34346 61 48 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MVIPVLKGIDIIEIQDDLKGSKLRGTAYIAEEDDSGSVEQHSLFKILS >gi|333608568|gb|AFDH01000012.1| GENE 32 34352 - 34507 63 51 aa, chain + ## HITS:0 COG:no KEGG:no NR:no METEIRKILKDCIRPTWEEAVRAINRHLNWEYDNIQYFTEEEILTKLDQKN >gi|333608568|gb|AFDH01000012.1| GENE 33 34917 - 35132 127 71 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKNSITEDALIKVRDISIVKLILSLSTREVFFSNFFFGSFVVLGNFDLSFPVYCSNKETF NACTKVKMGYL >gi|333608568|gb|AFDH01000012.1| GENE 34 35363 - 36223 1001 286 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKKATLAVLSAAIVLGGTLTTAGPYVAAQQLNAQPAVTAAAKDTDATSAFQLTPTLKKYW GGVEFNLEYLNATENSTEFMISRKLPANPADLDPEIDRKITDMDYLVIDSSGWIYERQSS SGGMFAFPDGALGMRHEEAVEALKDQPQELTIKPYIGGYYDDTTTMFSDKADVKTPLKGM YPLQVDQGKIGSISVTGVDFSEDKTVVRVAAAGETAPMQTTGIWLVENGKRLDESGKKLK SVEDGIYEYELEFPAVGKNASLELLTKRMTPVTFLDNLEMTVQLPR >gi|333608568|gb|AFDH01000012.1| GENE 35 36471 - 36875 201 134 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_4145 NR:ns ## KEGG: Pjdr2_4145 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 1 126 1 124 158 77 40.0 2e-13 MTPHLTRIVKRKLLSAAISSFLFAFFFAWYTRHEPFFYHPSAGTVPGAFSRFMSVGFIYL AYSAPVIYVYGTFTSLLSDFIGFCILPYSKLRLVISGIMHGVFGLILCPASLAAAALFFV ADITLAARFPGQKK >gi|333608568|gb|AFDH01000012.1| GENE 36 37080 - 37853 842 257 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|304408441|ref|ZP_07390086.1| ## NR: gi|304408441|ref|ZP_07390086.1| hypothetical protein PaecuDRAFT_4766 [Paenibacillus curdlanolyticus YK9] hypothetical protein PaecuDRAFT_4766 [Paenibacillus curdlanolyticus YK9] # 1 257 2 260 261 137 35.0 1e-30 MNAWWNLFRKEIGLRTAVTGSQKTWAAFSVGMIALMTFMAYRYQSGVVTPLWLGIIYLHV FLPSVYLLISFGKERERAPLWFQLPQPGWKLIGAKYAAALTEMIGGLFVSITMFLWMYKV EKMTLIERAGEDPFYLSGHVSYFTGLLHGSGLKEAFIFFFMAFFIAALAVLVYFTALALS NRVGRLRWLAAIVLIGAVMLVEYTFEMSPVYQFLFKWGYAFDWDGEPFYSGEMIWTLANL AVVVYIPAWLLDRKVEV >gi|333608568|gb|AFDH01000012.1| GENE 37 37858 - 38223 376 121 aa, chain + ## HITS:1 COG:BH0383 KEGG:ns NR:ns ## COG: BH0383 COG1725 # Protein_GI_number: 15612946 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus halodurans # 1 118 1 118 126 112 51.0 2e-25 MPEQFSGSQPIYLQLVQRVCRQIIRKEFPPGGKLPSVRELAVQFGVNPNTVQRVNMELER MGIVESRRGQGMFVTEDESLLTRLRDELKEGELKRFAEEMRDLGYSNEQIIENVQKFLKL N >gi|333608568|gb|AFDH01000012.1| GENE 38 38251 - 38970 202 239 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225088774|ref|YP_002660041.1| ribosomal protein S16 [gamma proteobacterium NOR5-3] # 1 222 1 230 312 82 26 6e-15 MAETGNGTEPIVAFDGVSKSFIGKRVLKDVSFRIPRGQIIGIIGTNGSGKSTVLKLMAGL LQPSKGRVELEGERVSRISSRRIAFLPEQDVFYPAHTVERTLRFYTAMYQDFDIAKALEL AESFGLDLKEKVARLSKGNRARLKIVLVLARQVPLIVMDEPLSGLDPLVRESIIRTVISF VDMEEQTLVLSTHEVDEIEPLLDRVILIRDGEVAGDESVEQIQSEHGIGLVNWMKQAGG >gi|333608568|gb|AFDH01000012.1| GENE 39 39041 - 39715 723 224 aa, chain + ## HITS:1 COG:mll6782 KEGG:ns NR:ns ## COG: mll6782 COG1802 # Protein_GI_number: 13475658 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Mesorhizobium loti # 15 210 14 210 224 102 35.0 8e-22 MKTKPTIQRIKRQSFREEIYEALRQAIVSLELEPGAKLSDQELAEQFGVSRTPVREALKR LEDEGLVEAVPGSATRVTPLKPEEGRHAFTVVAALHALAARLAVPYLGPEEYEALEQSNK ALEQALGRNDVPAAIEADGAFHAVFLQAAGNPEILSALKGILPKVQRLEISRFASVHGLQ SVEQHRRIADACRKRDAADAARLVEENWLTLGERLAESNQAEKG >gi|333608568|gb|AFDH01000012.1| GENE 40 39722 - 40699 1000 325 aa, chain + ## HITS:1 COG:no KEGG:BATR1942_00160 NR:ns ## KEGG: BATR1942_00160 # Name: not_defined # Def: YjlA protein # Organism: B.atrophaeus # Pathway: not_defined # 1 322 9 329 330 379 63.0 1e-103 MKPILLGILSAFFFAITFVLNRKMELGGGSWLWSGSLRYLFMVPFLLLIVAGRRNLRPLF RAMRLHPWQWLLWSTVGFGLFYAPMCFAAAYSPGWLTAGTWQLTIISGSLLAPLFWETVA TPAGPAKVRSRIPLRGLAMSLVILAGIFLLQLEQAGSLTAKDLLLGVLPIVVASFAYPLG NRKMMELCGGGLDVFQRVLGMTLASLPFWLLLAGWAYASAGLPSTEQTFQSLIVALSSGV IATILFFRATDMVREDVSKLAAVEATQSGEVLFALAGEVLLLSADLPSALSWLGIGIIVA GMVLHSHVSHRGPAARSNPDLSMEK >gi|333608568|gb|AFDH01000012.1| GENE 41 41019 - 41495 438 158 aa, chain + ## HITS:1 COG:CAC2539 KEGG:ns NR:ns ## COG: CAC2539 COG0454 # Protein_GI_number: 15895801 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Clostridium acetobutylicum # 39 152 36 148 149 74 34.0 7e-14 MEDLTLNHVDAKHPDLWLLIEKLDEELLQRYPAEDIFGLDRDDPRLDQSVFVVAYYGDRP VGCGGIRPFDAESTELKRFFVDNAYRKRGVAGRMLTFLEERARERDFISVKLETGPEQPE SLYFYKKHGYVEIDRYGEYIGSEASICFEKPLAAKGRE >gi|333608568|gb|AFDH01000012.1| GENE 42 41497 - 42132 617 211 aa, chain + ## HITS:1 COG:lin0293 KEGG:ns NR:ns ## COG: lin0293 COG0406 # Protein_GI_number: 16799370 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Listeria innocua # 5 190 7 195 211 124 37.0 1e-28 MAVTTLYLTRHGQTEWNVAKKMQGHQDSPLTSLGETQAAWLGEALADVPLDGIYSSSSPR AVRTAEIIRGARKLDIAERDSLREMNLGEWEGQRLSDIEQREPERHHAFWKAPHEFRAGT GESYEEVKERAVGEVLKMVEENPDKSLLIVTHTVALKLIMAHFESRDLRDLWELPYIHPT CLCKVELTDGVPRIVLHADISHYKNEIEGAF >gi|333608568|gb|AFDH01000012.1| GENE 43 42386 - 43570 1277 394 aa, chain + ## HITS:1 COG:AF1316 KEGG:ns NR:ns ## COG: AF1316 COG0498 # Protein_GI_number: 11498914 # Func_class: E Amino acid transport and metabolism # Function: Threonine synthase # Organism: Archaeoglobus fulgidus # 35 364 48 373 396 293 45.0 6e-79 MLDISQDFTGLDAEELKQLFQSRLSDRLSPYASGVWRYKELIFPDVEDSAIVTKYEGNTG LYRSDAVASYAGTRSVWLKAQSENPSGSFKDNGMTVAVTHGRSLGYDRFTCTSTGNTSSS LAMYASLAGRKSYVFVPNKNISLNKVLQTLAYGANIFSIEGTYDHGIKFLEENSEKLGLY ICNSINPFRIEGQKSIVYELAQVMSWKLPDWIFVPGGALSNVSALGKGLSDLYALGLIDK LPRVALVQAEGASPFYKMVAEGKTALEAEPNPYTRASALNIGDPPSWRKAQRTLQETNGV AVSVTDEEILNAKAVIDASGIGCEPASAATVAGLRKLVSQQIVDKDETVACILTGNMLKD TDALREYHLEDNKPFSNKIIPSSLTYDDIFAVIK >gi|333608568|gb|AFDH01000012.1| GENE 44 43700 - 44023 416 107 aa, chain - ## HITS:1 COG:MA2218 KEGG:ns NR:ns ## COG: MA2218 COG1226 # Protein_GI_number: 20091059 # Func_class: P Inorganic ion transport and metabolism # Function: Kef-type K+ transport systems, predicted NAD-binding component # Organism: Methanosarcina acetivorans str.C2A # 4 95 3 94 136 72 44.0 2e-13 MVSFILTLKRLVGGLWHAFKEKDFQVLFVLILLILLSGTIFYTQVEGLSVLDSLYFCVAT LSTVGHPNFVPQTELGKIFTIIYIIAGTGLFLGLILRVAYGIMTSKK >gi|333608568|gb|AFDH01000012.1| GENE 45 44186 - 44806 836 206 aa, chain - ## HITS:1 COG:lin0794 KEGG:ns NR:ns ## COG: lin0794 COG2357 # Protein_GI_number: 16799868 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 199 9 207 212 247 59.0 9e-66 MKSWAHFLLTYKFALDEVGTKLQILNEEFQFIHDYNPIEHMKTRIKSAESIAAKLKRKNL EITMDNTRSYIRDIAGIRIICSFSTDIYRIYDMICSQNDVRVVQTKDYIKHPKPNGYQSL HLIIQIPVFLTNRIEHVPVEIQIRTVAMDFWASLEHKIYYKYNEGVPAEIRQELKDTADL IASLDARMLALNNEVQSQKALVKPEA >gi|333608568|gb|AFDH01000012.1| GENE 46 45051 - 45668 484 205 aa, chain - ## HITS:1 COG:no KEGG:Tthe_0524 NR:ns ## KEGG: Tthe_0524 # Name: not_defined # Def: DNA polymerase beta domain protein region # Organism: T.thermosaccharolyticum # Pathway: not_defined # 3 202 2 201 204 209 52.0 8e-53 MTNEKIKQAAGYLAGKYEGHSVILYGSYANGDYTDESDLDLMIFSDRNFKRNDTSRIDGL LLDAWIHPTSSMDDPVRFLHIHDGVIVTDSRGLAAPFLEKIQSVFAEGPEKLGPEEADFQ KAWLQKMLKRAGKGDAEGDFRYHWLLKDSLEIYFKLKGRWYWGPKKSLRWLEQHEPGTFR LFRKALSPLAGQEDVSELIGHITKS >gi|333608568|gb|AFDH01000012.1| GENE 47 45893 - 47635 1523 580 aa, chain - ## HITS:1 COG:PA4982_1 KEGG:ns NR:ns ## COG: PA4982_1 COG0642 # Protein_GI_number: 15600175 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Pseudomonas aeruginosa # 55 349 485 763 763 204 42.0 3e-52 MDPNMKTEDERLEITHYRQTIEKLSQQVIQARQREEQALTQFSSLNNELITLQRQLSKTN VELVQSKAEAERANEAKSMFLATMSHEIRTPMNGILGMAELLADTLQTEEQKQSIAIIEE SASLLLTIINDILDLSKIEAGHMQPEPETFEVRKLLNHALRLLEPNASRKRNKLRGSVDE SVGQFLTGDAGRIRQILINLAGNAIKFTDDGEVHIRIRLLQSSATSQTLRFEVTDTGVGI PEEHVNRVFEPFYQAHTQREDAQKSTGLGLSICKRLVEWMEGRIDVTSKVGIGSSFWFEL QLAIPSEAEYRQEAAAALQTTGSGIGPAFTDEERSQPLLLVEDNAINRQVALLQLQKLGF MHIDTASNGEEALEARSRKDYSLVLMDSQMPVMDGLQATQLIREWENARRHPRSAIVALT ASAMQSDRLRCLEAGMDDFLTKPIQLSKLQSVIRRWLPAGPPEPVNEHVLIPEVIQELNG LDEPGSPGVLAMLLGMYQEQTPSKLNQLEEKMRAGDLTAVQYIAHDLKSTSLSLGIDQFS KLIERIENQAKNGTVHLSGTIFKELWQAYDKACRELKALL >gi|333608568|gb|AFDH01000012.1| GENE 48 47669 - 48751 991 360 aa, chain - ## HITS:1 COG:MTH124 KEGG:ns NR:ns ## COG: MTH124 COG5012 # Protein_GI_number: 15678152 # Func_class: R General function prediction only # Function: Predicted cobalamin binding protein # Organism: Methanothermobacter thermautotrophicus # 43 347 9 311 314 242 42.0 1e-63 MNHEETGRRLFQMAENLAEYVTQLQYEYQPDLAERFGERGRLLTIQDSGYSIKYLAESVY MQSPDLFNHYTSWMTELLSGYQVSREDLALNFQMIEQAINAHFGEADCALIGEYLEIGLH QIQSAQTSETFLSEERPFSETAIAYTEAILRADRREALQLILTKLEEGMAIADLYLHVFQ PSQREIGRLWQTNQITVAQEHLCTAATQMIMSHLYPHLFATERSGNTMVAACVGQELHEI GLRMVADLFELNGWDTYYLGANVPTRSLIRTLVEKKAQVVAISATMTFHVHLVEELIAEI RSSEAGQYVHILVGGLPFNIDRDLWRKVGADGYADDAQEAIRLADHWKNHRIGNELARSN >gi|333608568|gb|AFDH01000012.1| GENE 49 48972 - 50732 1656 586 aa, chain + ## HITS:1 COG:BH3447 KEGG:ns NR:ns ## COG: BH3447 COG2972 # Protein_GI_number: 15616009 # Func_class: T Signal transduction mechanisms # Function: Predicted signal transduction protein with a C-terminal ATPase domain # Organism: Bacillus halodurans # 39 583 42 596 602 218 26.0 2e-56 MRRWLDRSLKRKLSFLMLVSIGIPLLSFGIFSYQIASSVTEEKAKQSGFGLLTQMRTNME LMVQDVENMSIFLIGQRDVQQYLSDTQWDALKPTIIIGFLTNLAFSKPYIAEITIDSARD LPSLSNTSIVSSGMPPWPGPKDTEPGNRPKWWTPLYKNQTTIGEKNMISLVRPIRSVNTF AHLGSLTISLDQQVIADTLRKSNISEGGSVLLVNEQGNIIAGPGVEWLNRPLSEWMPGMP GITGTSGAFNVGQGADRNTVLYDTVPGVDWKLVGIMPYKNFREQNRYVLLLTAAAVAIAV VLVASLVIFFVQRVTKPLLMLTRFLKDTDPEEPMKALPVTSADEVGQLMRSYNRLSDRIE RLTEQVKLNEARKKETDMLALQAQIHPHFLYNTLSSVHWMALMSKDMKIAEMVGHLSDFL RFSLNKGAEYCEVQQEVAHAEHYAAIQAVRYPDKFDIEFVVDPDIRQKPVLKLLLQPLIE NALIHGIQKQREKGSIRVYAQRMGTELTFMVEDTGIGIEPDKLNEIRAALSAVDEPVVPG SYGLRNVHRRLQLHYGSEAGLHIRSIVGEGTVITFMIPIVEGAGTA >gi|333608568|gb|AFDH01000012.1| GENE 50 50729 - 52339 1726 536 aa, chain + ## HITS:1 COG:SPy1587 KEGG:ns NR:ns ## COG: SPy1587 COG4753 # Protein_GI_number: 15675474 # Func_class: T Signal transduction mechanisms # Function: Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain # Organism: Streptococcus pyogenes M1 GAS # 3 192 4 179 494 103 32.0 8e-22 MNILIVDDEVIIRTGLSTVIQWEELGFRLLPAAESAEEALERAPAEHPHIVLTDIRMGGM DGITMAEKVKQMLPDSEIIVLTGYDDFAYVQQAIRGGIGDYLLKSSRPEEIIRAVMKAKQ RIVSKWDARKADNMQRRAFHSGLLERLVTEGIDDADSLEQVPQVLTKLGLPHLPEAAAGV CLQVLLISVQGWGDSRAAGNLLQFAVDNMLGELLPCETLRRRDDIVVLLRAEGRDADALR SRLGRVSDKLKCVLFTAAGSRVSGLGQVPRSYREAVYAASFRGFAGAQTLLAYEAVEGRK GGRTVCSKEEESELAILLKNGNPIELRHFVQKALDGEIADAEATPASLKAYSDSLVVAAH RWLERTASALGMPQLPRLPDQDPAKRAQGDKLPGDGTGAEGQGDLQENLYLRLRVIMETY YQYVSEDGVLYIKRAIAYIQDNLDRTLTLQQVAGHVHVHPNHFSEVFKRETGVNYIEFVM RERIRRAAEILRETPVKVSEVAKKVGYEDIKYFSQLFKKYTGQTPTEFRAGREGKQ >gi|333608568|gb|AFDH01000012.1| GENE 51 52683 - 54008 1579 441 aa, chain + ## HITS:1 COG:BH3680 KEGG:ns NR:ns ## COG: BH3680 COG1653 # Protein_GI_number: 15616242 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Bacillus halodurans # 1 419 1 417 438 166 26.0 9e-41 MMKKTAKTGIALILSLSLLSACSKEPATTGTGDAGKGTEKVKLSLWHNFTGEDARAKTMR AIIEEYKKANPNVELEVQAIPPDGYKTRLKTVAAANEMPDLFQMWPGAMTKEFVSGNLLQ PVGDLLDKNAEWKNGFLPNSFDDFTVDGKVYSIPMSLSPTSILYYNKKMFDDNGVTVPKT WDEMMKAIETFKSKKITPIALGNKAAWLAQSSILSSLADRYTGTEWFMKAAAQDGAKFTD PEFVAALKALQDLGKAGAFQEGFNSIDNTQMEQMFAQGKAAMMIDGGWALTNLTNGAQPE ALNNIEVTVLPSVPNGKGDPKSLSGVVGIGLGLNKKVEGAKKEAADKLIQAMAGPEAQKR TLESNQLVSYKVELDKSKVSTLFAKVNDLVGQVKRTPVYDSQLSSAASEVINNGIQELLM GGKPEDVAKKLQDAQAKSLGK >gi|333608568|gb|AFDH01000012.1| GENE 52 54380 - 55258 1047 292 aa, chain + ## HITS:1 COG:BH3681 KEGG:ns NR:ns ## COG: BH3681 COG1175 # Protein_GI_number: 15616243 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Bacillus halodurans # 33 267 33 265 293 183 43.0 4e-46 MTSSSRRTNFIVLGLLPALLIYSVFVIVPIFWSAYYGFFDWKGIGEAKFNGFDNYVEALK DPIFWLALKNNLIVVAASVFGQVPIALVLALVLRKSNFFQRFIRSAVFMPMVLSSVVVGI IWSYIYHPQIGILNFLLDAVGLESWKKAWLSDKSVSMLALTVPIIWNYIGPYLIMFIAAL QNIPSDIDDAAMIDGATGSRKLFSVTLPMIWDTVKVTIVLCISGSLKAFDLIYVMTGGGP AHSTELLASYMYNNTFSVYRFGYGSAISTLIIIISLVLIAGSQRLMRRNQAV >gi|333608568|gb|AFDH01000012.1| GENE 53 55278 - 56171 1217 297 aa, chain + ## HITS:1 COG:BS_yurM KEGG:ns NR:ns ## COG: BS_yurM COG0395 # Protein_GI_number: 16080311 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Bacillus subtilis # 35 297 39 300 300 201 39.0 2e-51 MPQMTGTAVPPVKGTEPARRENAFGKLAKSSILNILLAVYALVTLYPLIWLFISAFKTND EFFGKPFGLPAEWKWDNFVQAWKVADIETAVINSAIVTLVALVLTLAIGALTAFVLSRFS FRMRGPLMGYFLLGMLIPVHSTLVPLFIMLKKIGMLDTYGALILPYVAFELPVAIFIIAA YMTSVPKEIEEAALIDGTGYWGIFTKMLLPLSVPALSTVGILAFLRYWNDFAFALVFINK PSLKTLPLSLSQFATGFGTDYRLTMAAMAISVIPTILIYLAFQEQIMKGMVAGAVKG >gi|333608568|gb|AFDH01000012.1| GENE 54 56242 - 56592 134 116 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLVAWYVNNSLEKPILTKDEAISVAKGKLQWTESQLVENTLIDRKTTQFDPTERESYFFE KVNKRHRYFYHIVYWNHSDPKGAIADLWIDSKDGKVVLGKIHEPDLKSAREFSDLE >gi|333608568|gb|AFDH01000012.1| GENE 55 56698 - 56931 141 77 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIALLYSFLSIAALLTVKFLNVSPAITLTTACLLIAAAFVCAYLDYKSNKGFNSYMKNVS ITYLIFIVIFAYTAVSL >gi|333608568|gb|AFDH01000012.1| GENE 56 57193 - 57309 129 38 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKSSLMQKVATGVLVAVLPKLVDMAFEKMRSKKQSRVQ >gi|333608568|gb|AFDH01000012.1| GENE 57 57670 - 57945 329 91 aa, chain + ## HITS:1 COG:no KEGG:PPSC2_c4266 NR:ns ## KEGG: PPSC2_c4266 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa_SC2 # Pathway: not_defined # 1 83 1 82 92 66 42.0 3e-10 MYDKIVDILCAIKEDQPELRQSLSPATDLNNDIGLDSLQMIQFMLKVEDQLNVAIDYDQF DYEHLESIETFISFLKSCQSQAQPLYEDVKQ >gi|333608568|gb|AFDH01000012.1| GENE 58 57953 - 59446 1274 497 aa, chain + ## HITS:1 COG:no KEGG:CA_P0138 NR:ns ## KEGG: CA_P0138 # Name: not_defined # Def: hypothetical protein # Organism: C.acetobutylicum # Pathway: not_defined # 8 497 8 446 446 261 31.0 4e-68 MIPKTVMGTFDPETRWRDPDLARLPAMPDKDRESIVLCMDDLLFPFCGPEDILYSRCKID PVLHEYLEGLGFSFRNRYLYDLNDERAALPGPDDFKRCVFRLAADKDKLVDPENRVLQAA GSGYSTGAEQPQSLAPMNAAGASRQAQSAEEAGITGAAGILSPYAITAETEAYLQAAGPL EPLPDLKTVVRVNSKMYSNRLLARIGEKCYGTEAGSAAEVEAAGNALLKQGPYLLKDPFG VSGKGNLLIDSEAMQRRIAEHLHKQEGSGLRSHFLLEPLLKKETDFSSHWLIRESGETEF ISVQRMINHQQNYGGSIRADEAFIRLLENAGYFGVMEKALRLLAEDGYHGFVCFDSMILE DGEVVSIVEINARKSMGLINAYLDKCWEKHGRTGWLTFLSLGLPEGFAFGRLLHALRESG LLLTAPGGYGIVPLSSNTVMVNEILTRRRMAEGTLNKRGMPKGRLYVSVVGRDDEHRSEL VESLRHVLAGLSVKVYN >gi|333608568|gb|AFDH01000012.1| GENE 59 59490 - 60575 891 361 aa, chain + ## HITS:1 COG:no KEGG:Ccel_2514 NR:ns ## KEGG: Ccel_2514 # Name: not_defined # Def: hypothetical protein # Organism: C.cellulolyticum # Pathway: not_defined # 1 359 8 369 369 218 32.0 4e-55 MLASGNSLGAYIPAMHLHTYLQGRGVGSDVHVLENVYHEEVRHKIRATKKAFHADFSVAR MGHKLARPVDTSLNEEAVLRLLEDWMRAGITRFAVFTGFWLPILERYKAAAGRPLDIRLI RLDAWDTPSFKVHKQLYPGYDNVWFYEPSKLSPGGYIASDEAEPLPYGQRAGSILIHGGG WGIGTYAETIRELRALGRRLDVIVYDASEVEEDDGVTRYFGTDASWDPWSRDAQGRHTFP PMVRYVREDGVLREYPLRDYSIYTDLMRNCAAIISKPGGATLNDSLSFGIPFVMLEPFGD HELHNSTYWETCGFGIRFTEWQARDFSEHLLEGICTRLLEQRSKINHFGRNTYAAENSSY V >gi|333608568|gb|AFDH01000012.1| GENE 60 60547 - 61722 1161 391 aa, chain + ## HITS:1 COG:CAP0136 KEGG:ns NR:ns ## COG: CAP0136 COG0535 # Protein_GI_number: 15004839 # Func_class: R General function prediction only # Function: Predicted Fe-S oxidoreductases # Organism: Clostridium acetobutylicum # 1 390 1 389 390 395 44.0 1e-110 MQPKTAVTFDQLTFRNMKRTLVPLAETGRKRREDPAYAAPVPYEIGIKLNNGCNLRCKHC FEWNPDGFHHGFAKEVKNDEIEIPVVEKLLAETRERKSRVFLWGGEPLFYSKFDELAELL AKEDRYTTICTNAILIEQKLDSILKMSENLVMLVSLEGFEKENDAIRGKGTFKKVIHAVQ LLLDLQKQGVYKGKVSVALTVNDQMVSQLYSFMEYFEEMGVDSVYFCFPWYIPTDTAEKM DTYFDAHFPHLAARFEEGHKNSWHSFTFHISPDNYDTLIDELNRVNSRVWNVRVRYQPAL EPEEVEDFIRGSEKPAMKRTKCFSISNRMDVMPDGKVNPCKFFPEFSVGNLNEESVADIF HGDDLRKQREVLACGLMPICSKCVLLYNNGI >gi|333608568|gb|AFDH01000012.1| GENE 61 61783 - 62766 1069 327 aa, chain + ## HITS:1 COG:DR1581 KEGG:ns NR:ns ## COG: DR1581 COG4586 # Protein_GI_number: 15806589 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, ATPase component # Organism: Deinococcus radiodurans # 4 321 10 327 346 317 48.0 1e-86 MDFIRVRELHKSFVYYRKEAGLKNSLKNLFARKSLVKEAVKSVSFDIGPGECVGFLGPNG AGKTTTLKMLSGILYPTGGEADVLGYVPWERKNEFKRLFSIVMGQKNQLWWDLPASESIY LNKCIYDVDDDLYRRSLAELSEMLDVQELLNVQVRRLSLGERMKMELIAALIHRPRLLYL DEPTIGLDFPSQKKVREFLKYYNEQFGATILLTSHYMKDVEDLCKRTIIINEGSLLYDGD LHKINDLFGEQKIIRLQFSEPVAEHRLAKFGKIVSGDGYNAVLELPKHRLKEVSRAVLDA FPIVDWTIEDVPIEESISMLYRKESAG >gi|333608568|gb|AFDH01000012.1| GENE 62 62799 - 63572 811 257 aa, chain + ## HITS:1 COG:FN0879 KEGG:ns NR:ns ## COG: FN0879 COG4587 # Protein_GI_number: 19704214 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Fusobacterium nucleatum # 7 257 16 261 261 104 29.0 1e-22 MGVQHSMEYRFHFFLGLLGAAFPILVQYFIWTAVYRHSGQTALFSYSYGQIILYTILAGL VSKLIATQFEHQIADDIKNGGLNKYLIKPVSYFGYRLVSFFGQKAIYYGITAILLIGIIW ISAAREVLDVEAVRLILFAFTLLGALLLNFLIAYCICASAFYLHEISYFFVITSLLVNIL SGGMFPLEIFGETVVKALQYTPFPYTIYFPVNVLSGKTEAAAMYQGLLIQCGWILLFFWL SRLTWRVSMKKYSAVGG >gi|333608568|gb|AFDH01000012.1| GENE 63 63585 - 64388 886 267 aa, chain + ## HITS:1 COG:DR1583 KEGG:ns NR:ns ## COG: DR1583 COG3694 # Protein_GI_number: 15806591 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Deinococcus radiodurans # 6 267 2 262 262 108 32.0 2e-23 MFKIARKYALLYGMFIKNCLIAQMEFRGNFIMSLLVESVYLLAKLLYVLVVFRTDLHVDG IPPEGLLLFIGMHTVATGIYVGLFFTNFMKIPEYIKDGSLDLMLTKPVSLQFMASLRYVD LALPIPDILVGFVMVGIGWHAMDIPLTFVQLAGFALLLVVSVVITYCLMIIPALLSFWFV QTGSVSEIAHSVWDANNFPMAIYPAWVRRIGTFVIPLFLITNFGPMFLLGQLSWLYAGLA LVGSLLLFAVVRLLWKQAVRGYSSASS >gi|333608568|gb|AFDH01000012.1| GENE 64 64619 - 65644 858 341 aa, chain + ## HITS:1 COG:RSp1011_1 KEGG:ns NR:ns ## COG: RSp1011_1 COG1063 # Protein_GI_number: 17549232 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Threonine dehydrogenase and related Zn-dependent dehydrogenases # Organism: Ralstonia solanacearum # 21 338 11 367 397 103 29.0 7e-22 MPDVATSEGYTSLNCVFQEPGRIELIEEKVPEPGPGQILCAAKKSLISTGTELACLKGSF DEGTVWSSWVRYPFYPGYSMAAEVLQTGSGVEGIRAGDRIICPAGHRQYFLADYREAALI PDTVRDEEAVFTQIAKVALLGILRAEPAFGERVGVVGLGLIGQLVVQYLNSSGARQIIAI APESSRLDQARRNGATDLLNLPVADAFGPIEELTGGRMLDTVYDITGSYAVLPHCTQLTR DLGKVILLGDSTEPSKQTIGPKVVFNSVSILGIHGRMMEGFKGWTEADMNGFIFESIRRE KLDVASLVSEKVSPLEAVSVYSRLAGRKSDSMGVIFDWTQV >gi|333608568|gb|AFDH01000012.1| GENE 65 65663 - 67321 1336 552 aa, chain + ## HITS:1 COG:CAC0182 KEGG:ns NR:ns ## COG: CAC0182 COG1472 # Protein_GI_number: 15893475 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase-related glycosidases # Organism: Clostridium acetobutylicum # 6 529 8 520 520 338 36.0 1e-92 MKACSELTLKEKIGQLLMAGFEGFTPDMNIRDLLQNHFVGGVVFFSRNLDNPGQAFALTE ELQRMAVAATGIPLWIGTDQEGGMVVRVRQGIAQLPAAMGLGAARNPGLLYEAAKGTAEE LKALGINMNFAPVVDINVNPRNPIIDVRSFGDDAELVSELGIAAMIGFQDGGIASVIKHF PGHGDTETDSHAELPVVRHSLERLRSVELVPFRRAALTGAEAVMTAHVGIPLLSGGEPVP ATLSREVLTGLLREELGFDGLIVTDCMEMDAVTQGIGVGEAVVRAMLAGADLLLVSHTYA SQLEAVAALERAVADGRLPEERIDASVERILRLKKRRIGELRERNWEEARLLLENPQTLR TIERLREESITAVNREPDFCRLSPDVDTLVLWPQISAACKSEDEPVHDATLAGFLRPFIG AKLTERVYGTSPDPDEIAALASEAQRYGQIIAGIFHTASNPGQPALVRKLLEGGAKVIPV SLRNPVDLAAFPEAKGFLACYEHHPHTLQALARVLTGTAEPAGTLPVTIPVYISERGESD EHRSASVIESAT >gi|333608568|gb|AFDH01000012.1| GENE 66 67281 - 68324 916 347 aa, chain + ## HITS:1 COG:no KEGG:BCG9842_B3389 NR:ns ## KEGG: BCG9842_B3389 # Name: not_defined # Def: hypothetical protein # Organism: B.cereus_G9842 # Pathway: not_defined # 1 346 1 329 330 120 25.0 1e-25 MNTVQLPLSNPPLKGFLRWGYTLSITSGHEETTPWFYSNFVQLSCTKKFLEDGRQCYVDF FRGEPNELNFNNPFLLTCTVNYMMLENLALDDWPKFFADQIRNGYYCIVFLDESRLSPAA CYQQEPFPHHLFLYGFNWEERIFYVSMFDFTGVYRNLEISFEEFLDAVNSMKKLLKEEQT ADHHTYFYKYEAEFHYPFDKTAVIDQLRDYLNGETRLNRINYNPDENEAFGIKVYDYLQM YYDAVEQNDPRLGMRNDVRHLHLLWEHKKMMSERIEYLVNEGIIPYDEELAEGYKDLAKR AMKLRDQYIRHEIREDKEVFERLRLRFNQFRDEEPALLQKLIALLES >gi|333608568|gb|AFDH01000012.1| GENE 67 68495 - 69052 593 185 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTLRFFQWFGKWSFPEGFGRRLTAGLIITAVLVSLVLSALLNRLVPGSMTYGDLMTRSQP ASFYLPDENFTYRDQGVIESFTRLALTKQALRKEEATSAFIPGKEPLRLSYENSKGRVIL VDADGRIYTPVSKAELRNESRLHWLWWKLDTGRSSYLYYVTEPDAAVARLAEQIKNSAPA LGAAG >gi|333608568|gb|AFDH01000012.1| GENE 68 69436 - 69915 450 159 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|167461934|ref|ZP_02327023.1| ## NR: gi|167461934|ref|ZP_02327023.1| hypothetical protein Plarl_05160 [Paenibacillus larvae subsp. larvae BRL-230010] # 8 159 103 263 263 79 29.0 9e-14 AGGGSAAGGGSAAGGGGLSLQLARLDDGSAFVIARLEARTADGLPALEARRESLEAALQE AGVQADCNVVLQGAAARPSAGAAAQADGLQALLAKRLGAAPLERYADGETVSITMSAPKL HASVISGGKRVNLQAAVHTVTESGLQRITIGTPVITTEY Prediction of potential genes in microbial genomes Time: Sun Jul 17 07:44:42 2011 Seq name: gi|333608567|gb|AFDH01000013.1| Paenibacillus sp. HGF7 contig00031, whole genome shotgun sequence Length of sequence - 724 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 483 - 641 64 ## HMPREF0675_3034 hypothetical protein Predicted protein(s) >gi|333608567|gb|AFDH01000013.1| GENE 1 483 - 641 64 52 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0675_3034 NR:ns ## KEGG: HMPREF0675_3034 # Name: not_defined # Def: hypothetical protein # Organism: P.acnes_SK137 # Pathway: not_defined # 1 51 1 51 245 102 98.0 6e-21 MVKEQRPCIIGTVAISTTLHLAPNDIGAFTDTDELRILMESAESHGYFDHPH Prediction of potential genes in microbial genomes Time: Sun Jul 17 07:44:44 2011 Seq name: gi|333608565|gb|AFDH01000014.1| Paenibacillus sp. HGF7 contig00122, whole genome shotgun sequence Length of sequence - 1557 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 91 - 150 2.3 1 1 Tu 1 . + CDS 177 - 1557 644 ## COG1020 Non-ribosomal peptide synthetase modules and related proteins Predicted protein(s) >gi|333608565|gb|AFDH01000014.1| GENE 1 177 - 1557 644 460 aa, chain + ## HITS:1 COG:BS_ppsB_2 KEGG:ns NR:ns ## COG: BS_ppsB_2 COG1020 # Protein_GI_number: 16078894 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Non-ribosomal peptide synthetase modules and related proteins # Organism: Bacillus subtilis # 8 460 410 848 1510 400 46.0 1e-111 MLARLEHVLHALAANPEMKLSELETTTEEEKEQILGAFQTKPTQYPHEESIKSLFEAQVK KTPDRIAVSCGTEQLTYAELNAKANIVANRLRAAKVRSETGQGETMVALLLERNMDMVIG ILGVVKAGYIYVPIDPEAPLDRIQYTLADSGASLLLVNQGKEQMISLPQGNIYAIEHLYS DEPDAAWGPELKANPDVAIAPQDALYIIYTSGTTGEPKGTVIEHECVVRLMHNDDMPFNF HEEDVWSLFAAYNFDVSVWEMYGALLYGGHLVVIPNDAKKDSYAFLELLREKRVTVLNQV PSSFYNLMQVELAEAGERLHVKHLIFAGEALQVGKLKAWQAKYPEMNIVNMYGITETTVH VTYKAITAEDIALDVNDVGKALPTLKIYILDGDKLCGIGVPGELCVAGVGVARGYLNKPE LTNKKFVANPFVPGERMYRSGDLAKWLPDGNIAYLGRMDD Prediction of potential genes in microbial genomes Time: Sun Jul 17 07:44:46 2011 Seq name: gi|333608561|gb|AFDH01000015.1| Paenibacillus sp. HGF7 contig00071, whole genome shotgun sequence Length of sequence - 1903 bp Number of predicted genes - 3, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 161 - 394 368 ## 2 1 Op 2 . - CDS 407 - 1573 817 ## COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase 3 1 Op 3 . - CDS 1589 - 1903 231 ## COG2309 Leucyl aminopeptidase (aminopeptidase T) Predicted protein(s) >gi|333608561|gb|AFDH01000015.1| GENE 1 161 - 394 368 77 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLTGEAALEVIQKIGELDNVEMDTNFLEKGIDSVKVVEILIEFEMMFNIDVLDDQLNLDE LSTPKHIQDYVNGIIAK >gi|333608561|gb|AFDH01000015.1| GENE 2 407 - 1573 817 388 aa, chain - ## HITS:1 COG:BS_yjiC KEGG:ns NR:ns ## COG: BS_yjiC COG1819 # Protein_GI_number: 16078287 # Func_class: G Carbohydrate transport and metabolism; C Energy production and conversion # Function: Glycosyl transferases, related to UDP-glucuronosyltransferase # Organism: Bacillus subtilis # 13 352 15 354 392 59 21.0 1e-08 MAHLFIAVQRVLGHVIPALAIGQQLKKKGHKVTLVTHPANKELAVRAGLAFLPAEWGKFP EKFIYEQAQEMDALLAGREVDWMICDSSQAAPAYAAEKRGIPWISLQTTVPYPEEALPGS RTVFNRLRQSYARELNGVRMRLGLPPLTDDRRTRGDLAGLSPRLHLVNVHAALYPEEGGI PEQSVFTGSCTLESGDRDRVTEASRLEAEPCPGRPVVLVCASSTERHDSREVMNRYIGAA VSLSEENSFHLIVAEHKPYEGKRPLPPHVSWITAYPNHDLLLPRADAVITHGGCGTVQSV MRYGVPMVVIPLASDQHLLARTCERLGIALTVGPEEAGRGRIGQALHSLLAEGNPYTPRA KELAAIMGRDNPNETAVRAIEQVLQNNS >gi|333608561|gb|AFDH01000015.1| GENE 3 1589 - 1903 231 104 aa, chain - ## HITS:1 COG:lin1644 KEGG:ns NR:ns ## COG: lin1644 COG2309 # Protein_GI_number: 16800712 # Func_class: E Amino acid transport and metabolism # Function: Leucyl aminopeptidase (aminopeptidase T) # Organism: Listeria innocua # 2 104 264 366 370 137 60.0 7e-33 AEALSGILKTDEGASRPGEFGIGLNPHIRQPMRSLLFDEKMAGSIHLALGQAYEMADNGN TSGIHWDLVLCQLEAYGGGELYFDDILIRKNGYFVMPELEPLNP Prediction of potential genes in microbial genomes Time: Sun Jul 17 07:44:52 2011 Seq name: gi|333608559|gb|AFDH01000016.1| Paenibacillus sp. HGF7 contig00024, whole genome shotgun sequence Length of sequence - 500 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 262 - 498 209 ## COG1335 Amidases related to nicotinamidase Predicted protein(s) >gi|333608559|gb|AFDH01000016.1| GENE 1 262 - 498 209 78 aa, chain - ## HITS:1 COG:MT2103 KEGG:ns NR:ns ## COG: MT2103 COG1335 # Protein_GI_number: 15841531 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Amidases related to nicotinamidase # Organism: Mycobacterium tuberculosis CDC1551 # 1 76 111 186 186 57 44.0 5e-09 EDGSILETVLRDRGIEAVDIVGLALSHCVKDTALDAQRLGFVTTCLTDLSEPVSPEMGNA AVAVMEDAGVTVTTSSQL Prediction of potential genes in microbial genomes Time: Sun Jul 17 07:44:57 2011 Seq name: gi|333608523|gb|AFDH01000017.1| Paenibacillus sp. HGF7 contig00150, whole genome shotgun sequence Length of sequence - 28838 bp Number of predicted genes - 36, with homology - 13 Number of transcription units - 26, operones - 9 average op.length - 2.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 950 - 1180 79 ## 2 1 Op 2 . - CDS 1231 - 1650 89 ## gi|328553015|gb|AEB23507.1| hypothetical protein BAMTA208_06660 - Prom 1755 - 1814 3.5 3 2 Op 1 . - CDS 2045 - 2881 119 ## CbC4_4072 putative replicative DNA helicase 4 2 Op 2 . - CDS 2911 - 3096 88 ## gi|328553014|gb|AEB23506.1| replicative DNA helicase 5 3 Tu 1 . - CDS 3559 - 3873 152 ## - Prom 3994 - 4053 3.8 6 4 Tu 1 . - CDS 4158 - 4442 148 ## PPSC2_c3280 hypothetical protein - Prom 4568 - 4627 6.5 7 5 Op 1 . - CDS 4648 - 5319 57 ## PPSC2_p0514 hypothetical protein 8 5 Op 2 . - CDS 5338 - 5925 99 ## COG3440 Predicted restriction endonuclease 9 6 Tu 1 . - CDS 6539 - 6997 -129 ## Ava_B0310 phosphoadenosine phosphosulfate reductase - Prom 7230 - 7289 8.9 10 7 Tu 1 . - CDS 7598 - 8059 63 ## - Prom 8081 - 8140 4.7 + Prom 8338 - 8397 2.9 11 8 Tu 1 . + CDS 8440 - 8547 90 ## 12 9 Tu 1 . - CDS 10100 - 10186 104 ## - Prom 10328 - 10387 7.1 13 10 Tu 1 . + CDS 10143 - 10325 80 ## + Term 10511 - 10547 -0.7 14 11 Tu 1 . - CDS 10538 - 11740 424 ## BATR1942_07565 hypothetical protein - Prom 11890 - 11949 5.2 + Prom 11712 - 11771 5.8 15 12 Tu 1 . + CDS 11921 - 12037 84 ## + Term 12075 - 12114 0.1 16 13 Op 1 . - CDS 13357 - 13587 168 ## 17 13 Op 2 . - CDS 13620 - 13973 119 ## SUN_2300 hypothetical protein 18 14 Op 1 . - CDS 14692 - 14859 133 ## - Prom 14879 - 14938 2.6 19 14 Op 2 . - CDS 14948 - 15055 102 ## - Prom 15144 - 15203 1.7 20 15 Tu 1 . - CDS 15775 - 15858 62 ## - Prom 16091 - 16150 4.5 - Term 16388 - 16444 8.8 21 16 Op 1 . - CDS 16467 - 17276 250 ## - Prom 17400 - 17459 2.6 - Term 17289 - 17325 0.0 22 16 Op 2 . - CDS 17463 - 17849 198 ## - Prom 18012 - 18071 4.4 23 17 Tu 1 . - CDS 18326 - 18463 135 ## - Prom 18656 - 18715 9.7 - TRNA 18573 - 18649 89.5 # Met CAT 0 0 24 18 Tu 1 . - CDS 18993 - 19487 173 ## - Prom 19507 - 19566 6.5 25 19 Tu 1 . - CDS 20178 - 20381 109 ## - Prom 20430 - 20489 5.3 26 20 Tu 1 . - CDS 20848 - 21306 347 ## - Prom 21394 - 21453 2.9 27 21 Tu 1 . - CDS 21507 - 21992 46 ## gi|164516157|emb|CAP48203.1| putative integron gene cassette protein - Prom 22104 - 22163 4.5 28 22 Tu 1 . - CDS 22299 - 23114 -169 ## Halsa_0240 sec-C motif domain protein - Prom 23139 - 23198 3.1 29 23 Op 1 . - CDS 23730 - 23996 97 ## 30 23 Op 2 . - CDS 24017 - 24217 133 ## - Prom 24463 - 24522 9.6 31 24 Tu 1 . - CDS 24558 - 24767 72 ## - Prom 24845 - 24904 6.3 - Term 25127 - 25156 1.4 32 25 Op 1 . - CDS 25172 - 25663 98 ## 33 25 Op 2 . - CDS 25681 - 25854 123 ## - Prom 25967 - 26026 8.5 34 26 Op 1 . - CDS 27238 - 27330 87 ## 35 26 Op 2 . - CDS 27354 - 28238 237 ## BSU20790 integrase; phage SPbeta 36 26 Op 3 . - CDS 28258 - 28836 144 ## gi|328912248|gb|AEB63844.1| SPBc2 prophage-derived uncharacterized protein yopQ Predicted protein(s) >gi|333608523|gb|AFDH01000017.1| GENE 1 950 - 1180 79 76 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIKSLGIDIKIILAFDRDKKPKEIKLQAQKFGKSRSIFVMWDGKSVFTAEAKHSPTDLGF QPFMELYKDRYNYRIS >gi|333608523|gb|AFDH01000017.1| GENE 2 1231 - 1650 89 139 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|328553015|gb|AEB23507.1| ## NR: gi|328553015|gb|AEB23507.1| hypothetical protein BAMTA208_06660 [Bacillus amyloliquefaciens TA208] # 2 135 127 260 354 94 36.0 2e-18 MKWLKDIKKDRSKSFLEVKENKVLSDDSLDRFVMLPHATLIEEGIKYDIQQEFQVGFDLK SERIIFPIHNSYGEIVSIKGRTTDPNYKIKDIPKYLYLHNFNNMWELYNWHRALWYIIEC KEIIIYEAEKPVGYLHNLV >gi|333608523|gb|AFDH01000017.1| GENE 3 2045 - 2881 119 278 aa, chain - ## HITS:1 COG:no KEGG:CbC4_4072 NR:ns ## KEGG: CbC4_4072 # Name: not_defined # Def: putative replicative DNA helicase # Organism: C.botulinum_BKT015925 # Pathway: not_defined # 5 276 247 521 522 99 28.0 2e-19 MVLPSGVGKSSILTEKAVLGIYESDEKAIVFANEEGIRRWRSRLLATVASRILKKPLARD VIERGTFTEEGEAILNEARGWIEKHRKENILFINLKKYRVQDVIGRIELYRARGYKHIFF DTFKPDLSQQIERWLAFSNSAQDLYDCIKEEAYNCHCLATVQLKIGREYRFIDLDCIGKS LEIVEVAAVVMAGRLMFDDEYKEEGHKNKLYPYNWKKDDFSGEWIPIPYQLDPKKKYLIL FLPKNREGSEDEQIVFEVNYDFNIWREVAYVKVPNNGR >gi|333608523|gb|AFDH01000017.1| GENE 4 2911 - 3096 88 61 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|328553014|gb|AEB23506.1| ## NR: gi|328553014|gb|AEB23506.1| replicative DNA helicase [Bacillus amyloliquefaciens TA208] # 1 61 152 212 503 64 54.0 2e-09 MSLSQLQTFYQTKFKSSFAQINAGEVVEYYLGDNLSETIEELKKGIQTGIPFFDSPRLNK K >gi|333608523|gb|AFDH01000017.1| GENE 5 3559 - 3873 152 104 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKEIKENKNIEYSLILEAYKLSEDKIKWFISNVLDYKNDSEGINACITMMLKHGINPAFQ ERKNKAKQEIYQTEMYESKTRVDMSLGDVARTKVKDEMDISHLL >gi|333608523|gb|AFDH01000017.1| GENE 6 4158 - 4442 148 94 aa, chain - ## HITS:1 COG:no KEGG:PPSC2_c3280 NR:ns ## KEGG: PPSC2_c3280 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa_SC2 # Pathway: not_defined # 1 94 44 137 137 67 38.0 2e-10 MMDSEIKMKQIYARKLKHIQNLISADFVDTKKDLKNRGLKIYEYKRDSKGVYAKFLCRGY HHEFSMLGVLIKSEVELRLAAYLAMDLKDDKTEL >gi|333608523|gb|AFDH01000017.1| GENE 7 4648 - 5319 57 223 aa, chain - ## HITS:1 COG:no KEGG:PPSC2_p0514 NR:ns ## KEGG: PPSC2_p0514 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa_SC2 # Pathway: not_defined # 29 206 24 222 284 80 29.0 4e-14 MKGDACLNKAKMKYISNRLAFEKEQLICLLPEEFKKTFKDLSYIAGGCIYSIFQNQEPKD FDFFLTDETFAMSLRRHFIDNESGYHGKDISGGTYRGYPLTITENAISIGKYQIITRWIG QPEEVVKEFDFKHLQFYHAGNEIETLTQFDFLDSKDLRYNEDRARDICGSVFRSSKFVAR GMKISQKEMAKMLLRLRNVGFSEKEVETLIACREKSETDHFGS >gi|333608523|gb|AFDH01000017.1| GENE 8 5338 - 5925 99 195 aa, chain - ## HITS:1 COG:Z5892 KEGG:ns NR:ns ## COG: Z5892 COG3440 # Protein_GI_number: 15804871 # Func_class: V Defense mechanisms # Function: Predicted restriction endonuclease # Organism: Escherichia coli O157:H7 EDL933 # 1 177 115 291 294 139 42.0 2e-33 MRELSDTMGGFTEEVYSLLLNNKDYIITLIKILLDSQFPETQHEDILSDLSIEDIIVSTR KNRSGLFRKNILIAYEFRCAVCGFNIQIDHFHVGVEAAHIKWHKFGGPDVEENGLALCAL HHKLFDYGVFTLSKNNIILVSAIALGHGESTKMLLDYHGREIHKVNNPKHRPNKLFVEWH NDEVFKRPERFLEIK >gi|333608523|gb|AFDH01000017.1| GENE 9 6539 - 6997 -129 152 aa, chain - ## HITS:1 COG:no KEGG:Ava_B0310 NR:ns ## KEGG: Ava_B0310 # Name: not_defined # Def: phosphoadenosine phosphosulfate reductase # Organism: A.variabilis # Pathway: not_defined # 1 118 89 205 257 134 52.0 1e-30 MEEWIGTDYCISYIGIRADENRDGYNQKSKNINITAKYLFQTDGLVLSDIYKILEETVGL PEYYKWRTRSGCYFCFYQRRVEWAILSILYPDWFERAEDYEIQHADGRFYTWVKDKPLDY VKNNAIHIITRYIKNNLRKHRIKSNLLIQKMK >gi|333608523|gb|AFDH01000017.1| GENE 10 7598 - 8059 63 153 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGKDIVRIELVLENCECIEVDRKYISSLHIDGIKSSIIANKNSIVKSDHCSYFFLAANRN GNECYGDYGNSQGTYKRLGEGDITSVNILYDNHTEETYYTAWSDESNQVNKWQDSYINQF GDIFITICESKSIEDNHIKKDLNDQDYLSYMGY >gi|333608523|gb|AFDH01000017.1| GENE 11 8440 - 8547 90 35 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MYAKMKLRLIIGMRLPHFHKAIPGRYNVIGYFLFF >gi|333608523|gb|AFDH01000017.1| GENE 12 10100 - 10186 104 28 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MDIIDGIAEMERSFIYQITIVEIMIILE >gi|333608523|gb|AFDH01000017.1| GENE 13 10143 - 10325 80 60 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNDLSISAIPSIISIVKIIFSFFVHLVYELLNIAANNDVIRTIRSHLATSNKNEILLFQL >gi|333608523|gb|AFDH01000017.1| GENE 14 10538 - 11740 424 400 aa, chain - ## HITS:1 COG:no KEGG:BATR1942_07565 NR:ns ## KEGG: BATR1942_07565 # Name: not_defined # Def: hypothetical protein # Organism: B.atrophaeus # Pathway: not_defined # 6 351 2 355 357 321 50.0 3e-86 MNYTFEKNKLYDYLGKHVVDAFKRHEVYVAGGAITSLFTNREINDIDVYFRNEDSLVEFI EEAWEDSDWVNALTKKSIMITMGKERNVQLIHFKYFSEASDIFNAFDFTACMGAFDFKTE DFVLHDNFLKDNAQRMLRFNKNTAFPIVSLLRVQKYKEKGYTISKPEFIRIALKCMDLQI KDAEDLKEHLGGMYGINYDKMIQFEEGEEFSLDKVIDKIADLSLHEDYFKKPEEVKFECV EDIIKEISKEPVQITQINGYDYRLTRKGTLRHISDLPKKYTEFDGKTYIENKRFYKFVNG VGDGKYSSHFDSDFIYKIGEFAIPKNDYLYFNEQKEINESNYRYQGKLIEVVIPYEHFDH KEDAKVHAKKCFVVREVPREEYMNWIQNDDDKCETLKPIF >gi|333608523|gb|AFDH01000017.1| GENE 15 11921 - 12037 84 38 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MEFNYQNEQSGKKFGFKIHSSVLIGLISLIKLLSWLLI >gi|333608523|gb|AFDH01000017.1| GENE 16 13357 - 13587 168 76 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNDEIQEIINYFELEEGYDKNVLITDILGEIGDVRGYSADEIGLEWDGRTLTDLRSFADE FYGKIIEGVCNVLKSY >gi|333608523|gb|AFDH01000017.1| GENE 17 13620 - 13973 119 117 aa, chain - ## HITS:1 COG:no KEGG:SUN_2300 NR:ns ## KEGG: SUN_2300 # Name: not_defined # Def: hypothetical protein # Organism: Sulfurovum_NBC37-1 # Pathway: not_defined # 2 117 6 119 129 103 47.0 3e-21 MKVIVAGSRTFSDYEMLKRKLDSLLALQPRNEIVIVSGAAKGADKLGEKYAAEKGYRISS HPADWERHGNSAGYIRNEEMAKEADALVAFWDGISKGTKHMIDLAKKHGLQVRVINY >gi|333608523|gb|AFDH01000017.1| GENE 18 14692 - 14859 133 55 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSKEGFSTVIEYPRKMEVGSVVTFQNKFIVISKITKIEPITETKFLVSGFGKVTQ >gi|333608523|gb|AFDH01000017.1| GENE 19 14948 - 15055 102 35 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTDMNQIWAYLQEYVAIIKMYLQITLHRLKQLLTD >gi|333608523|gb|AFDH01000017.1| GENE 20 15775 - 15858 62 27 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFMSSESKAAKFGRRKLEVQIIQKKGE >gi|333608523|gb|AFDH01000017.1| GENE 21 16467 - 17276 250 269 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTTNTLSLKELHEEIEDVERESELFDSIDTFTVDSITRLHENQEHAALKVVEQRAMQSNR LVEGEGISVKERGIIKLHYEKFFGRMLELAKQGKNLVFIAEKKDKNENKKDAIGNQITVK VGEMPNMQKNAEYDFDVVIKTFIKDGESHGLVEKDRTGTFKPGEVIYKPNYTHWAEAIAQ AQSGRQRKKEEIKKFDAAIDKEAEHHSISSGDRIGQIILEIENIINSHTVNKQKEIADEF TKQFSTIKFKEIKDLDKLQKMLIVAKKVS >gi|333608523|gb|AFDH01000017.1| GENE 22 17463 - 17849 198 128 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MYVGGRLIDYFGNFSDMTFTVDTSKHEALAENIKNKTRFGDIISVQGRCVNGAVLVEAPK VLDWGGESPEGVGKLVEDKVSEFQITKVTGHKAKAYKQDDFIQTIQTYETNAPDDSPFPW EQSESPFN >gi|333608523|gb|AFDH01000017.1| GENE 23 18326 - 18463 135 45 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSDLKETKGKVRIEGYIVGFDPCDEKLIEKALQNKAPVNHLEVLV >gi|333608523|gb|AFDH01000017.1| GENE 24 18993 - 19487 173 164 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLEELLKTLSLPVIIAIITSIITNYIIKKNNDKTLFLRYVTEERAKWRDFIKNSTSIIYS KDYKNENKKAVITKLILNLNPQKSSAGIIDDTIIKLLGKIEGGLSDDLTLKQLRFCVSML LKHDWERAKIESKGGLREQKEESERLDKILKDFKDWLDENRINL >gi|333608523|gb|AFDH01000017.1| GENE 25 20178 - 20381 109 67 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MAGDNPSINKERDRIFYEVIENLSENKEGTWGIVIVGSNHAADTPGSMRNLLDQRGHQCI VNLIDSI >gi|333608523|gb|AFDH01000017.1| GENE 26 20848 - 21306 347 152 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKASIDLLDEEMLRNKELVSKMVGYLKLSPPIINAFDALTAGASHLKIEAWNNIVNNNIY PHLTATQHVSYYMAHYKVKTLKSNLDMEIAEWKRICEFNKYYKENPQDEIMQFSNLKVIA STKAAKLKEMLDETLSALSVVETLIENDWKED >gi|333608523|gb|AFDH01000017.1| GENE 27 21507 - 21992 46 161 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|164516157|emb|CAP48203.1| ## NR: gi|164516157|emb|CAP48203.1| putative integron gene cassette protein [uncultured bacterium] # 1 138 6 142 171 163 62.0 4e-39 MVNSWHVSVAAESITAFLFARIGYDVSVQYGANQPEYDLMVSKEDIIIKVSVKGSRDGGW GLTQGFKNKEVNYHEAINLWLNKHSNKTIFSLVQLKDVPINELPRVYLATPADIADLMKR ARNGAGDTVLRENKVWSKGPIHSRCHSKKDGYFLSNEYTRF >gi|333608523|gb|AFDH01000017.1| GENE 28 22299 - 23114 -169 271 aa, chain - ## HITS:1 COG:no KEGG:Halsa_0240 NR:ns ## KEGG: Halsa_0240 # Name: not_defined # Def: sec-C motif domain protein # Organism: Halanaerobium_sapolanicus # Pathway: not_defined # 98 270 15 187 189 122 40.0 1e-26 MRDFLIFYYRSGALLNEYTLGGLQKEDKIPLLLEKIFDSKYLIELSNTIIKHYDFSIIKS EEDGFLLSDQYVSTCALSIKGQYANLSNRHLGLKDVLILIPLSSKYYITYFNGKKPHYIN SNAVNILSGDQVREINTSIINNSYIKCIGAKRESIELVKEAFKFESPSKAIMVYESGRQI AALNKKEVFFYDTDIEQWSYFRNLHHTKNFHTKRNDICNCGSGKKYKRCCLTKTERNYSI VNNMYKEGHHIKIRVHSTAILEKPLDEYTFV >gi|333608523|gb|AFDH01000017.1| GENE 29 23730 - 23996 97 88 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKWADLSNNAKSILEWVEHVWTGQKQNIEIHKNMMWRQPLKYVGDVNVFVTEELFDEIKT WLPHSKATVYSIDGDMIRVRLRDEIKLH >gi|333608523|gb|AFDH01000017.1| GENE 30 24017 - 24217 133 66 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKYPIGLKMTWLFADNPEDIYVIDGYTQDDKYIVYVADKNGVRYAAQKTLVTENQLDELI VTIIAI >gi|333608523|gb|AFDH01000017.1| GENE 31 24558 - 24767 72 69 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNDYMIGLVYSDKGCDIYFGLKTKVMNVITAASLAGSRPYAKSYPTEDKMLLQLEYYRSE KPESSIFQA >gi|333608523|gb|AFDH01000017.1| GENE 32 25172 - 25663 98 163 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTLKKLRNFLATHLEPSLCEYILEKLPIEYESKTLIAFSNDIPMYVNVGEILYLTRLKGN LVKIHTLDSVYSYEDKKFDLIEFLSKENGFYMVDSKLAICPLHIKKYNSRERNIYFHDSG SKEYPFVSVTERTVREFLKVQFGKEFDIHSSNDEYAPLGVKKC >gi|333608523|gb|AFDH01000017.1| GENE 33 25681 - 25854 123 57 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKKIFESIAKLAIKTSDSVENTTDKVAFWHLPIKRKSNISISLVSCSLKIKQLTKNL >gi|333608523|gb|AFDH01000017.1| GENE 34 27238 - 27330 87 30 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MMNNGYEVYNYHRLKEDFLNVETIIKVYGQ >gi|333608523|gb|AFDH01000017.1| GENE 35 27354 - 28238 237 294 aa, chain - ## HITS:1 COG:no KEGG:BSU20790 NR:ns ## KEGG: BSU20790 # Name: yopR # Def: integrase; phage SPbeta # Organism: B.subtilis # Pathway: not_defined # 11 277 2 265 325 93 29.0 9e-18 MSNKIYEGGYFNEYQKMRYVNSLPETSSLQARRILSRAKSIEETYGQDLYNFTLDQIESL LHYLNPSTLNASRANFYMVQNYIRWGIEQDLRDTNINPLDVLAENNYFKKFIDTSKKALY TNDEINNMISVCVNAQDAFPIIAIFEGVFGKSGYDELLNLKRQSIVSENLISLTDGEHER VINVSQDFMNLMYKALDQKTYIKKIGILKPTMRSSAEANLEQSDYVLRNVITRSQTNGKA DKFLIQRRIAAVKSYNDDWVRVLSPYIIRNSGMLYMAKTFMISTEKSKNIIMKK >gi|333608523|gb|AFDH01000017.1| GENE 36 28258 - 28836 144 192 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|328912248|gb|AEB63844.1| ## NR: gi|328912248|gb|AEB63844.1| SPBc2 prophage-derived uncharacterized protein yopQ [Bacillus amyloliquefaciens LL3] # 1 153 250 409 449 101 40.0 3e-20 ILSIRVYDTDTAKKYFGQINTINVVKTERLEELKQEKVSYVAVKQLQINSDLKGKIASGS KISELAGHYTTSDILANAIDQVFEPKTAFEAKEVGVYLTDFFNNLLGVFDEEFNTKANLL RQPRMFIGYIVIAKIFKENDVPLSKIKNVIETIIEEDKELDKVVTYNKGASSRLQKLVKD HFEKIDIKSWIS Prediction of potential genes in microbial genomes Time: Sun Jul 17 07:48:44 2011 Seq name: gi|333608436|gb|AFDH01000018.1| Paenibacillus sp. HGF7 contig00115, whole genome shotgun sequence Length of sequence - 89561 bp Number of predicted genes - 83, with homology - 75 Number of transcription units - 45, operones - 18 average op.length - 3.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 1 - 1126 1000 ## COG0842 ABC-type multidrug transport system, permease component 2 1 Op 2 . - CDS 1119 - 1520 237 ## GYMC10_5834 ABC-2 type transporter - Prom 1588 - 1647 2.3 3 2 Tu 1 . + CDS 1557 - 1709 165 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain + Term 1828 - 1874 4.0 - Term 1573 - 1609 7.3 4 3 Tu 1 . - CDS 1751 - 2590 1051 ## - Prom 2707 - 2766 3.7 + Prom 2558 - 2617 4.2 5 4 Op 1 . + CDS 2745 - 3395 610 ## COG4493 Uncharacterized protein conserved in bacteria + Prom 3437 - 3496 2.8 6 4 Op 2 . + CDS 3547 - 4272 788 ## HM1_1537 hypothetical protein + Term 4328 - 4364 7.2 - Term 4316 - 4352 7.2 7 5 Tu 1 . - CDS 4372 - 5424 1099 ## STAUR_1665 sheath polysaccharide-degrading enzyme - Prom 5451 - 5510 2.6 - Term 5651 - 5691 9.1 8 6 Tu 1 . - CDS 5739 - 7121 1578 ## COG0477 Permeases of the major facilitator superfamily - Prom 7187 - 7246 5.2 + Prom 7176 - 7235 8.9 9 7 Op 1 . + CDS 7304 - 8773 1403 ## COG1982 Arginine/lysine/ornithine decarboxylases + Prom 8776 - 8835 3.2 10 7 Op 2 . + CDS 8857 - 9276 429 ## BBR47_39050 hypothetical protein + Term 9298 - 9344 6.7 - Term 9290 - 9328 6.2 11 8 Op 1 . - CDS 9379 - 9696 300 ## Pjdr2_3822 protein of unknown function DUF1292 - Prom 9778 - 9837 3.0 - Term 9742 - 9779 2.2 12 8 Op 2 . - CDS 9852 - 10808 690 ## COG1073 Hydrolases of the alpha/beta superfamily - Prom 10907 - 10966 1.8 + Prom 10811 - 10870 1.6 13 9 Tu 1 . + CDS 10891 - 11064 189 ## - Term 11036 - 11092 2.1 14 10 Tu 1 . - CDS 11097 - 11576 346 ## COG4846 Membrane protein involved in cytochrome C biogenesis - Prom 11810 - 11869 3.9 + Prom 11673 - 11732 3.3 15 11 Tu 1 . + CDS 11765 - 12508 437 ## COG1234 Metal-dependent hydrolases of the beta-lactamase superfamily III + Term 12526 - 12564 4.0 16 12 Tu 1 . + CDS 12676 - 14307 1362 ## COG0642 Signal transduction histidine kinase 17 13 Tu 1 . - CDS 14311 - 14748 394 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - Prom 14906 - 14965 5.9 + Prom 14737 - 14796 3.2 18 14 Tu 1 . + CDS 14971 - 15384 319 ## COG0517 FOG: CBS domain + Term 15414 - 15447 4.1 19 15 Tu 1 . - CDS 15536 - 15718 111 ## - Prom 15784 - 15843 2.7 - Term 15873 - 15906 3.1 20 16 Op 1 . - CDS 15910 - 16536 444 ## 21 16 Op 2 . - CDS 16566 - 17207 470 ## COG2032 Cu/Zn superoxide dismutase - Prom 17271 - 17330 1.9 - Term 17295 - 17328 -0.8 22 17 Tu 1 . - CDS 17458 - 18948 1561 ## COG0554 Glycerol kinase - Prom 19132 - 19191 6.3 - Term 19149 - 19180 -0.2 23 18 Tu 1 . - CDS 19233 - 19619 404 ## COG0346 Lactoylglutathione lyase and related lyases - Prom 19748 - 19807 3.5 - Term 19723 - 19753 -0.5 24 19 Tu 1 . - CDS 19823 - 20065 158 ## - Prom 20097 - 20156 8.0 + Prom 20086 - 20145 5.9 25 20 Tu 1 . + CDS 20279 - 20476 265 ## + Term 20478 - 20509 -0.1 - Term 20506 - 20552 5.0 26 21 Op 1 . - CDS 20578 - 20778 221 ## GYMC10_0169 hypothetical protein - Prom 20827 - 20886 7.6 27 21 Op 2 . - CDS 20946 - 21341 377 ## LBF_0356 hypothetical protein - Prom 21591 - 21650 76.1 + TRNA 21574 - 21646 62.1 # Val GAC 0 0 + Prom 22073 - 22132 6.2 28 22 Tu 1 . + CDS 22159 - 22338 67 ## + Term 22423 - 22463 7.2 - Term 22595 - 22623 1.0 29 23 Tu 1 . - CDS 22638 - 23579 865 ## PPE_00692 hypothetical protein - Prom 23600 - 23659 8.7 - TRNA 23740 - 23825 66.4 # Leu TAA 0 0 - TRNA 23832 - 23905 90.0 # Met CAT 0 0 - TRNA 23952 - 24025 74.3 # Met CAT 0 0 30 24 Tu 1 . - CDS 24099 - 24266 137 ## Pjdr2_3851 hypothetical protein 31 25 Tu 1 . - CDS 24393 - 24923 518 ## COG1267 Phosphatidylglycerophosphatase A and related proteins - Prom 25160 - 25219 3.6 + Prom 24998 - 25057 6.6 32 26 Tu 1 . + CDS 25088 - 25600 554 ## COG1514 2'-5' RNA ligase + Term 25621 - 25658 5.1 - Term 25609 - 25646 3.5 33 27 Op 1 . - CDS 25724 - 27493 1191 ## 34 27 Op 2 27/0.000 - CDS 27520 - 28788 1281 ## COG0845 Membrane-fusion protein 35 27 Op 3 . - CDS 28820 - 31918 3127 ## COG0841 Cation/multidrug efflux pump - Prom 32012 - 32071 7.5 - Term 32135 - 32168 3.1 36 28 Tu 1 . - CDS 32201 - 34333 2305 ## Pjdr2_5780 hypothetical protein - Prom 34543 - 34602 5.1 + Prom 34421 - 34480 3.3 37 29 Op 1 . + CDS 34596 - 35966 1274 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases 38 29 Op 2 . + CDS 36034 - 36540 437 ## COG1247 Sortase and related acyltransferases + Term 36669 - 36726 4.9 - Term 36657 - 36714 14.3 39 30 Op 1 9/0.000 - CDS 36939 - 37580 602 ## COG0461 Orotate phosphoribosyltransferase 40 30 Op 2 3/0.100 - CDS 37641 - 38372 629 ## COG0284 Orotidine-5'-phosphate decarboxylase 41 31 Op 1 24/0.000 - CDS 38494 - 41703 3524 ## COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ) 42 31 Op 2 7/0.000 - CDS 41690 - 42868 1114 ## COG0505 Carbamoylphosphate synthase small subunit 43 31 Op 3 15/0.000 - CDS 42904 - 44196 1413 ## COG0044 Dihydroorotase and related cyclic amidohydrolases - Prom 44248 - 44307 1.9 44 31 Op 4 8/0.000 - CDS 44326 - 45234 901 ## COG0540 Aspartate carbamoyltransferase, catalytic chain 45 31 Op 5 . - CDS 45234 - 45785 488 ## COG2065 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase - Prom 46015 - 46074 4.8 + Prom 46062 - 46121 3.7 46 32 Op 1 6/0.000 + CDS 46208 - 46918 915 ## COG2171 Tetrahydrodipicolinate N-succinyltransferase + Term 47019 - 47057 5.1 47 32 Op 2 . + CDS 47095 - 48360 1238 ## COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase + Term 48366 - 48423 8.2 - Term 48283 - 48319 -0.9 48 33 Tu 1 . - CDS 48438 - 49601 1150 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase 49 34 Op 1 15/0.000 - CDS 49679 - 50644 318 ## PROTEIN SUPPORTED gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit 50 34 Op 2 . - CDS 50641 - 51138 536 ## COG0597 Lipoprotein signal peptidase - Prom 51338 - 51397 3.1 + Prom 51165 - 51224 2.7 51 35 Tu 1 . + CDS 51281 - 52018 766 ## COG1734 DnaK suppressor protein - Term 51986 - 52039 6.9 52 36 Op 1 . - CDS 52056 - 52487 452 ## Pjdr2_3872 hypothetical protein 53 36 Op 2 6/0.000 - CDS 52556 - 55318 2804 ## COG0060 Isoleucyl-tRNA synthetase - Term 55676 - 55720 -0.8 54 36 Op 3 6/0.000 - CDS 55752 - 56237 583 ## COG3599 Cell division initiation protein - Prom 56262 - 56321 1.5 - Term 56299 - 56333 1.3 55 36 Op 4 7/0.000 - CDS 56347 - 57126 260 ## PROTEIN SUPPORTED gi|227484957|ref|ZP_03915273.1| ribosomal protein S4e 56 36 Op 5 12/0.000 - CDS 57126 - 57401 327 ## COG0762 Predicted integral membrane protein 57 36 Op 6 14/0.000 - CDS 57432 - 57857 398 ## COG1799 Uncharacterized protein conserved in bacteria 58 36 Op 7 7/0.000 - CDS 57894 - 58577 642 ## COG0325 Predicted enzyme with a TIM-barrel fold 59 36 Op 8 2/0.200 - CDS 58626 - 59480 472 ## COG1496 Uncharacterized conserved protein - Prom 59521 - 59580 5.5 - Term 59578 - 59632 4.1 60 37 Tu 1 1/0.300 - CDS 59664 - 59960 311 ## COG1873 Uncharacterized conserved protein - Prom 59995 - 60054 2.7 - Term 60073 - 60107 6.0 61 38 Tu 1 2/0.200 - CDS 60149 - 60931 714 ## COG1191 DNA-directed RNA polymerase specialized sigma subunit - Prom 61120 - 61179 2.9 - Term 61161 - 61195 4.0 62 39 Op 1 . - CDS 61202 - 61924 844 ## COG1191 DNA-directed RNA polymerase specialized sigma subunit 63 39 Op 2 . - CDS 61954 - 62877 615 ## PPE_03121 possible sporulation sigma factor processing peptidase (EC:3.4.23.-) - Prom 62954 - 63013 2.8 - Term 62973 - 63031 22.0 64 40 Op 1 35/0.000 - CDS 63081 - 64229 981 ## COG0206 Cell division GTPase 65 40 Op 2 25/0.000 - CDS 64452 - 65705 1028 ## COG0849 Actin-like ATPase involved in cell division - Prom 65863 - 65922 6.2 - Term 65929 - 65976 0.6 66 40 Op 3 . - CDS 66091 - 67026 696 ## COG1589 Cell division septal protein - Term 67063 - 67112 11.4 67 41 Op 1 1/0.300 - CDS 67120 - 68406 716 ## COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase 68 41 Op 2 2/0.200 - CDS 68422 - 69327 872 ## COG0812 UDP-N-acetylmuramate dehydrogenase - Prom 69463 - 69522 3.0 69 42 Op 1 31/0.000 - CDS 69538 - 70668 918 ## COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase 70 42 Op 2 25/0.000 - CDS 70674 - 71771 1331 ## COG0772 Bacterial cell division membrane protein 71 42 Op 3 28/0.000 - CDS 71881 - 73269 1440 ## COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase 72 42 Op 4 28/0.000 - CDS 73273 - 74235 1074 ## COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase - Term 74290 - 74324 2.6 73 42 Op 5 26/0.000 - CDS 74411 - 75835 1515 ## COG0770 UDP-N-acetylmuramyl pentapeptide synthase 74 42 Op 6 26/0.000 - CDS 75832 - 77319 978 ## COG0769 UDP-N-acetylmuramyl tripeptide synthase - Prom 77351 - 77410 2.7 75 42 Op 7 3/0.100 - CDS 77420 - 79372 1799 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 76 42 Op 8 . - CDS 79458 - 81791 2279 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 77 42 Op 9 . - CDS 81827 - 82249 385 ## Pjdr2_3897 cell division protein FtsL 78 42 Op 10 29/0.000 - CDS 82263 - 83213 380 ## COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis 79 42 Op 11 . - CDS 83258 - 83689 434 ## COG2001 Uncharacterized protein conserved in bacteria - Prom 83798 - 83857 8.0 - Term 83836 - 83869 5.2 80 43 Tu 1 . - CDS 83884 - 84891 723 ## Pjdr2_3900 hypothetical protein - Prom 85100 - 85159 3.8 - Term 85104 - 85154 14.1 81 44 Op 1 . - CDS 85175 - 86437 1679 ## COG0499 S-adenosylhomocysteine hydrolase 82 44 Op 2 . - CDS 86489 - 88123 1530 ## COG4365 Uncharacterized protein conserved in bacteria - Prom 88169 - 88228 6.2 + Prom 88170 - 88229 8.6 83 45 Tu 1 . + CDS 88392 - 89559 959 ## COG0477 Permeases of the major facilitator superfamily Predicted protein(s) >gi|333608436|gb|AFDH01000018.1| GENE 1 1 - 1126 1000 375 aa, chain - ## HITS:1 COG:BS_yfiN KEGG:ns NR:ns ## COG: BS_yfiN COG0842 # Protein_GI_number: 16077900 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Bacillus subtilis # 19 369 20 377 385 105 23.0 2e-22 MNSFYIAWNMVKRTLGSKKGWLAFLLIPSLVVSAAIGFIGREEGRVTVLVVNEDQGSFGG YVLKEMAARPEYTVKLLDNVWELKEAIIEKRGQAGFVLPADFSRELLAGGSPVIQSYELN VNEATAVMNVHLDGITGRMVSAAAVAKASSGSADSRSVALANILEQAGKHTVGAETGDLK LASKPGLTTITGFTLMFLMSLVLSTVSLVLEDRTKMTMARMYTAPVKAAEIAAGNFLGSF VVGSLQIFFVLVITRVVIGYDYGVPFLSQFAVLAAFMLVSLGLASTVAGLIKNPGNASMI NSMVVTPTSMLGGCFWPISIMPDYLQKLSNFMPQTWTIQAIEKMAAGASLADVRLPLAIL GLMAVVLLAVCSAIL >gi|333608436|gb|AFDH01000018.1| GENE 2 1119 - 1520 237 133 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_5834 NR:ns ## KEGG: GYMC10_5834 # Name: not_defined # Def: ABC-2 type transporter # Organism: Geobacillus_Y412MC10 # Pathway: ABC transporters [PATH:gym02010] # 15 131 275 391 393 90 41.0 2e-17 MGRQHRSGGSGSRYWGNRLPLVLLIAGLVILVSMSLSVVLSLLFPNGATAKALLQVLIIT MTFLSGGFSPVPGEFMRQLSLFTVNHWAFQGLLRNMLAGELPGVISSIVPLFWIAAACLL LMVVVYRKVGYRE >gi|333608436|gb|AFDH01000018.1| GENE 3 1557 - 1709 165 50 aa, chain + ## HITS:1 COG:CAC0240 KEGG:ns NR:ns ## COG: CAC0240 COG2197 # Protein_GI_number: 15893532 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Clostridium acetobutylicum # 1 48 161 208 208 69 68.0 1e-12 MADGLSNKEIAQELFLSEGTVKNYISDILGKLALRDRTQIAIFYWKQARP >gi|333608436|gb|AFDH01000018.1| GENE 4 1751 - 2590 1051 279 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNISSKKMIAAAAGVLMSVSFAAGVYADDWIQKVTAYVRSDFKVVVNGTPANLSSPVLIY DNNSYLPLKEIASRLNANVNWQDSNQTIYVNTRLYPQQPETGDVVYDEIILENPTAYIMK YLGGDYPVLVTLSKGMYYRQSDVQKMGMDTKGLRKAKEKYTEEIYINETELRKVWKENPI LTYGEEMPPIIAGEKDDFKIRAIRGYVKDMSNYKIGDTYFFHNPIFIEKLEEANTYRYLL TENGQYYQVILKLTEMQKDLYIVGSSSKQLLGKTAVDPY >gi|333608436|gb|AFDH01000018.1| GENE 5 2745 - 3395 610 216 aa, chain + ## HITS:1 COG:BH2637 KEGG:ns NR:ns ## COG: BH2637 COG4493 # Protein_GI_number: 15615200 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 13 215 5 207 213 195 45.0 7e-50 MSNSTTIRPAFRGFDSSDFETFAIEGLDERMKAIQERIQPKFKMLGETLCEDIALHAGTE MHLHIAKHARRTVNPPKDTWLAIAANKRGYKQHPHFQIGLFDDHVFLWFALIYEVPDKQA IAGRLLANQDELYRSIPEHYVLSFDHMQKRSVPAGDLTAETFGDALARFRDVKKAEFLVG RHFDRQDPILQKGDAFTRMAKETFESLMPFYRTARG >gi|333608436|gb|AFDH01000018.1| GENE 6 3547 - 4272 788 241 aa, chain + ## HITS:1 COG:no KEGG:HM1_1537 NR:ns ## KEGG: HM1_1537 # Name: not_defined # Def: hypothetical protein # Organism: H.modesticaldum # Pathway: not_defined # 74 232 63 234 271 72 30.0 1e-11 MFLQPSKKKWAGTLALAFLLGSVSLGARQAAAFGSPEELPDEAVLSQPTPSAGMPGRQDS HNPKDSSVPGLPILEEAASILGTTVPSLKESLNKGKSLSDVAKEKGISEKDLTAKLLAIR DSKIDQAVKEGRLDAEHAAALKQKMAEHLKRMLQDKALLNHHNRHQHGKMRHSLKPDQEK LAQAIGISKEELHRELRQGKSLQQIAESKGITKSQLISRIQSLLAPDLEKYVEQRVPARE S >gi|333608436|gb|AFDH01000018.1| GENE 7 4372 - 5424 1099 350 aa, chain - ## HITS:1 COG:no KEGG:STAUR_1665 NR:ns ## KEGG: STAUR_1665 # Name: not_defined # Def: sheath polysaccharide-degrading enzyme # Organism: S.aurantiaca # Pathway: not_defined # 62 347 300 601 603 246 50.0 8e-64 MKTRLTPTRLLRKSLLSAVLLGAAFAPAMYAAVPHESGVSADQSAARINEEGAAALRTVS CSSVSCLQNALKNALPGDRILLAPGTYKGTFSSAVNGTQSNPITIESRDPANQALISGTS AGGGYCLKITGDNWVIQNLKFTNAQKGIILDNSNDTLISGVEVYGIGYEGVHFRDGSSRG ILENSYIHDTGTVNKGFGEGVYVGSAEGAGYNQTVNDTIIRGVRIGPNVTAEHIDIKERT SGTLVENCLFNGTGISGENYADSFIDVKGNHAVIRNNTGWRNGNTVITDAFQLHQIVAGW GVNNDFSGNTVNLDQSSAYVINASQGTEAKAHDNVRYPAGNLYKGNVTTY >gi|333608436|gb|AFDH01000018.1| GENE 8 5739 - 7121 1578 460 aa, chain - ## HITS:1 COG:SA0874 KEGG:ns NR:ns ## COG: SA0874 COG0477 # Protein_GI_number: 15926604 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Staphylococcus aureus N315 # 262 418 194 357 396 92 32.0 2e-18 MMNLAGWKNKAGAAAPFVVQLLVIMFVVEFVKGALLLTILPVYMKTVLGATAFVVGWSLA AQYIGDNVFRTPVGWLIDKAGYRLSMLIGILLSGSSVLIMATFTHHAWMVAACAMLGVGT APLWPAVIAGTTEVAGDKAKGTIMSVVYMAWLSGTGLGPVVINFFIHGSNYGPAYRLLLI SMGVVLLIALFLPRKPLLREGGEKREESRHVPAGAAFPAVAAMEAGADPLGEAVTAAGGG AAAAMPAADRKPLGERVRLYVREVRASLREMKVSRLLFPAMFIQTFALGVLTPILTLYAR EVLHLSPSQYSMLLIVGGGAAVALLVPIGKLVDRKGIKGLLTAGLIFSSVALLALGFIRQ LAAVYVVVGLLGIGYALIIPSWNALIASCVPKEKRGAVWGFFLTIEGLGMIVGPIVSGKL WDAFGPSVPFTVSGSVLLLLLALQWRILAKSRGNAAPRTG >gi|333608436|gb|AFDH01000018.1| GENE 9 7304 - 8773 1403 489 aa, chain + ## HITS:1 COG:BS_cad KEGG:ns NR:ns ## COG: BS_cad COG1982 # Protein_GI_number: 16078527 # Func_class: E Amino acid transport and metabolism # Function: Arginine/lysine/ornithine decarboxylases # Organism: Bacillus subtilis # 1 488 1 489 490 650 62.0 0 MDQHRTPLFSALRTHAEKNPIQFHIPGHKKGVGMDPEYREFLGENALSIDLINIAPLDDL HQPTGVIEEAQKLAAQAFGAEHTYFSVQGTSGAIMTMIMSVAGQGDKIIVPRNVHKSVLA AIIFAGIKPVFISPARDANLGIDHGITTKSVRRALEKHPDAKGVLVINPTYYGVCTHLKE IVDLVHSYDIPVLVDEAHGVLIHFHDKLPMSAMEAGADMAATSVHKLGGSLTQSSVLNVQ GSRVNPKRIQTIMSMMTTTSTSYILLASLDTARRHLALNGHELAERTIALAEYARSEINK IPGLYSFGEEILGTEATYAYDATKVTIHIRHLGLTGYDVENWLRDRYNIEVEMSDMYNIL CLVTPGDTSDNIDVLLQALRELSAEHYTGNAEDDLIVIIPEIPQLSLIPRDAFYGDTEVV PLKESAGRIIAEFIYVYPPGIPILLPGEVISQENIDYIVEHVEVGLPVKGPEDRSCQFVK VIVETQPIF >gi|333608436|gb|AFDH01000018.1| GENE 10 8857 - 9276 429 139 aa, chain + ## HITS:1 COG:no KEGG:BBR47_39050 NR:ns ## KEGG: BBR47_39050 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 3 139 4 141 142 151 52.0 1e-35 MSQSAFIRFVTGSTMTSPTLDELKGQLEHYREQLSRTGVQLSWEYDSAGFPYTVETKPEG EGKWFYLKGTTPRYRSIVLGVGSEMREDSLQHYVQIVLPDTATHGDKSKANELGKYLARH WKARLDLFNGRTMYFNPRK >gi|333608436|gb|AFDH01000018.1| GENE 11 9379 - 9696 300 105 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_3822 NR:ns ## KEGG: Pjdr2_3822 # Name: not_defined # Def: protein of unknown function DUF1292 # Organism: Paenibacillus # Pathway: not_defined # 1 103 1 101 106 110 70.0 3e-23 MSDHKHDHDQDCGCGHDHDHEHEESVFIVTDEEGKEHEMVMVYTFDSQDQLYAVLLDRND PEADGVIFRIEEENDDAYLVNIEDEAEWERVVAVYNQIIAEENRE >gi|333608436|gb|AFDH01000018.1| GENE 12 9852 - 10808 690 318 aa, chain - ## HITS:1 COG:BH1308 KEGG:ns NR:ns ## COG: BH1308 COG1073 # Protein_GI_number: 15613871 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Bacillus halodurans # 4 303 21 321 321 220 39.0 3e-57 MIWIVWSVLLLLFAGFLASVGIAAYVGWQLTHPKRQPVDDSPANYGLVFEEVEIPSRTGD IVLSGWHLPPPDTAVRQNPMTVILSHGYAGNRLERGLPSLALARDLIAAGFRVIMFDFRN SGKSQGSMTSVGYYEKYDLLGVIDWVTETYPREAVSLIGFSMGATTSLLAAAEHEKVAAV VADSPFHHLKKYLKTNLPVWSGLPNIPFTPLILLLFPPLLKIDPEGVDAVKAVEAIYPRP VLFIHSSDDRAIPQASSEEMWRRHPDAFDFWRTAGAPHVGSYHLESAEYACRVIAFLEKT VSEETIDPRKVAISYNSH >gi|333608436|gb|AFDH01000018.1| GENE 13 10891 - 11064 189 57 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLKTMNRSLDLEIEYLKSVLTYMAAQYKYELNHPRVVEVSQQLDGLIVEQMKKRAAS >gi|333608436|gb|AFDH01000018.1| GENE 14 11097 - 11576 346 159 aa, chain - ## HITS:1 COG:BH2333 KEGG:ns NR:ns ## COG: BH2333 COG4846 # Protein_GI_number: 15614896 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Membrane protein involved in cytochrome C biogenesis # Organism: Bacillus halodurans # 12 156 8 151 169 112 46.0 2e-25 MAFSVGSNLHAISLFGTLGMALLVIAIRMKASKRPINAMKILMPPIGMSTGFLMFVAPLT RIPVTWGLIAFAVGAVVFAYPLIRTSGFSKQGDHVYLHRSKAFLIILVVLLAIRLFLHSY VEEYVTVYQTASIFFILAFGMLLPWRVAMYVQYRKLMNS >gi|333608436|gb|AFDH01000018.1| GENE 15 11765 - 12508 437 247 aa, chain + ## HITS:1 COG:sll0647 KEGG:ns NR:ns ## COG: sll0647 COG1234 # Protein_GI_number: 16329560 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily III # Organism: Synechocystis # 1 247 1 255 256 95 30.0 1e-19 MSLQLQMIGTGSAFAKKYFNNNALWTCSGFALLVDAGNTAPRALHELNMKPDELDAVLIT HLHSDHVGGLEELALQMRYVYGRKLRLLLPAALEAPIWEHTLKGGMENTGEHLNRLADYF DVELLEEGRPSEIHPGFRIEIIRTPHIAGKPSFSLFVNDTIFYSADMIFQPELILNEVVG QRDCRHIFHDCQLEGPGVVHAALEELLTLPESVQSRIRLMHYGDSMPAYVGKTGKMSFIK QHQIYTL >gi|333608436|gb|AFDH01000018.1| GENE 16 12676 - 14307 1362 543 aa, chain + ## HITS:1 COG:BS_kinA_3 KEGG:ns NR:ns ## COG: BS_kinA_3 COG0642 # Protein_GI_number: 16078463 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Bacillus subtilis # 303 524 12 234 236 162 40.0 2e-39 MIYKWFVIFYASVISIASWKLGLSVSGWLPLSLLFLAAAVLGLKRSSVAFSAVKLVLLTL FHWSSQTDWCFTLYLLLLASEVYESKSRKTVWMLVTLNLITFAVIALITAPAFSVYPPLW MILLYLSNFAIFMGLALTVFNTFRQRDKLAGERRQLMTHDSLTGLPNFEACHAMLHNLVD KESRLLFILIDCTDLKAMNKTQGFQAGNQILKQIAVLLKIKFSQAAFISRYGGDEFAVAV TYEDKETMRAYVDQQLGSELPKLTGIQITYGIAVLPDDGSSKDDLVLVAENSLFSMKREM WLKREEHMLRSEKLRIVGELASGMAHEIRNPLTTIKGFLQISKSNGYNIETWYPLIMDEI SRMSELTAEFLQFSKPHAVQFRVLSMQVCIQRVISLTLSEMSRLGHEIVYDPPEKAMNIW MDPDKMVQLLINLFKNAYESMEDNKKMAIRLYERDHHAVLEIEDQGSGIPVEQLDQIFNP FFTTKDSGTGLGLSICHKIVQDHNGTIEVESFIGRGTTFIMTFPLAEPESSPCYPLNRRK DAV >gi|333608436|gb|AFDH01000018.1| GENE 17 14311 - 14748 394 145 aa, chain - ## HITS:1 COG:SA0906 KEGG:ns NR:ns ## COG: SA0906 COG0454 # Protein_GI_number: 15926640 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Staphylococcus aureus N315 # 5 145 4 140 144 110 39.0 8e-25 MEIIRVTTDEQLKECLGVRKEVFVDEQNVPLELEIDELDASHQSGHHFLIREGGKAIAAA RWKPFEENRAKLQRIAVLKANRGTGLGSVLVQAMEAHAKELGYKGAVLDAQCQAEPFYKK IGYETIPGEPFDDAGIPHVRMVKSL >gi|333608436|gb|AFDH01000018.1| GENE 18 14971 - 15384 319 137 aa, chain + ## HITS:1 COG:CAC3674 KEGG:ns NR:ns ## COG: CAC3674 COG0517 # Protein_GI_number: 15896906 # Func_class: R General function prediction only # Function: FOG: CBS domain # Organism: Clostridium acetobutylicum # 1 134 1 134 140 172 59.0 2e-43 MNIAFFLLPKLEVITTTIDATLRQTLERMEYHRYTAVPILTEDGKYMGTVTEGDLLWFLK NSPGITFDNAHRHTLEEVPLRMRNKPVHIHANMEDLIDLAKVQNFVPVVDDAGNFIGIVR RSDIIEYCAKQMFQAPV >gi|333608436|gb|AFDH01000018.1| GENE 19 15536 - 15718 111 60 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRNIDIRVMSKQLGFGTESLESWLAKERQQEPEKQPAYRLESLRSCYENRPSDEFVSLSV >gi|333608436|gb|AFDH01000018.1| GENE 20 15910 - 16536 444 208 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIKTQELKQQMDDLSKQNDMLLVEFEQLKKMIMNGGSQNSDDSSGSSGGGQYESGQSTDN GQQQSQDQNQNQNQNQDQSGTGGSQSARRSASSGKRQQSQDGQNQQDSSSGGGNQQAQGY SQQQNGSSGNNGSSAAVSEMADDLYVIKNMVEQLERKTSQYVSEQTNQSLTEKDVVNLVL YLMNGMIDWTSEFVGKNQSSSGSSGPVQ >gi|333608436|gb|AFDH01000018.1| GENE 21 16566 - 17207 470 213 aa, chain - ## HITS:1 COG:aq_1050 KEGG:ns NR:ns ## COG: aq_1050 COG2032 # Protein_GI_number: 15606333 # Func_class: P Inorganic ion transport and metabolism # Function: Cu/Zn superoxide dismutase # Organism: Aquifex aeolicus # 68 209 26 168 169 141 49.0 1e-33 MRKPILSLLLSAAAVAAMTGCGGGNNKNAGPNSTITPEALPTAATAPSASPGATPSGSPS SSSGVEIELKNGEGSVVGTAKFTQENKGVRVQVQATKLVPGEHGIHVHESGVCAGPDFKS AGGHFNPNSKMHGMENPQGPHVGDLPNLKAEANGEAKLDTVSEAFTLEKDKPNSLLKQGG TSLVIHEKQDDMKSDPAGNSGNRIACGTISEGK >gi|333608436|gb|AFDH01000018.1| GENE 22 17458 - 18948 1561 496 aa, chain - ## HITS:1 COG:BS_glpK KEGG:ns NR:ns ## COG: BS_glpK COG0554 # Protein_GI_number: 16077994 # Func_class: C Energy production and conversion # Function: Glycerol kinase # Organism: Bacillus subtilis # 1 496 1 496 496 792 74.0 0 MSSYIMSIDQGTTSSRAILFNHEGQIVHTAQQEFPQYFPKPGWVEHNANEIWASVLAVVA TCLIESGVKPEQVAGIGITNQRETAVVWDKRTGEPVYNAIVWQSRQTQQICDELKQRGME QKFRDKTGLLLDAYFSGTKVKWILDHVEGAREKAERGELLFGTIDTWLIWRLTVGEAHVT DYTNASRTLMFNIHELRWDEELLELLTIPASMLPDVRSSSEVYAHTSESHFFGAKVPVAG VAGDQQAALFGQACFDKGMAKNTYGTGCFMLMNTGEQAVTSSHGLLTTIAWGLDGKVQYA LEGSIFVAGSAIQWLRDGLRMIKTAKDTETYASRVESTDGVYVVPAFVGLGTPYWDSDVK GAVFGLTRGTTKEHFIRATLEALAYQTKDVLAAMEADAHTRLKKLRVDGGAVSNDFLLQF QSDMLGVPVERPLINETTALGAAYLAGLAVGYWKDCAEIAAQWSVGGTFEPEMPAQRSGQ LYSGWKKAVHAAMAFK >gi|333608436|gb|AFDH01000018.1| GENE 23 19233 - 19619 404 128 aa, chain - ## HITS:1 COG:BS_ywbC KEGG:ns NR:ns ## COG: BS_ywbC COG0346 # Protein_GI_number: 16080888 # Func_class: E Amino acid transport and metabolism # Function: Lactoylglutathione lyase and related lyases # Organism: Bacillus subtilis # 5 124 4 125 126 143 55.0 1e-34 MAVTKLEHVGVMVTDMEKSISFYESVVGLKLKDTVINGAMKLAFLGFDVKGETEVELIEG YGGSLTEEGRVHHLAFTVDDIEAEFDRVRKTDVVMIDTEITTLPNGSRYFFFHGPDGEWV EFFQSTRA >gi|333608436|gb|AFDH01000018.1| GENE 24 19823 - 20065 158 80 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIMIVWFIVIAFIVLKLATSVYNPPKKRKNKHHYSDSGSSGYTDSGWSFWGDSSGSDCDS GSGGGSDCSGGGDGGGGGGD >gi|333608436|gb|AFDH01000018.1| GENE 25 20279 - 20476 265 65 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MDKRSNDDVGIYNETSNTAGGINTPPDREDKAATDPVSDIVEEIMDNLSGEHSTDSSPDK PADKR >gi|333608436|gb|AFDH01000018.1| GENE 26 20578 - 20778 221 66 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_0169 NR:ns ## KEGG: GYMC10_0169 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 66 1 65 67 73 56.0 2e-12 MERWEYQTLKFFTKGFFVGGKLDLDEFDQNLNEMGAQGWELISCFDTSQYQGSSKEVICV FKRKLF >gi|333608436|gb|AFDH01000018.1| GENE 27 20946 - 21341 377 131 aa, chain - ## HITS:1 COG:no KEGG:LBF_0356 NR:ns ## KEGG: LBF_0356 # Name: not_defined # Def: hypothetical protein # Organism: L.biflexa_Patoc1_Ames # Pathway: not_defined # 3 130 9 132 138 66 31.0 3e-10 MERIISSRLAGNLLLLLNAGMLLVHVLILLKVIPSHFIWGGRINGESELVALESLSVVIQ IVFIALIALKTGYLLPGRFKRTARIGMWLLFGFMVLNTAGNLASISGLEKLFMTPLTVVL ALLSLRLAVEK >gi|333608436|gb|AFDH01000018.1| GENE 28 22159 - 22338 67 59 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MYSNMTNNFLIYDRQHRRADDDPDIYNRYKSFLIFIGFDAAGADLEVAYFMNAVFDTLD >gi|333608436|gb|AFDH01000018.1| GENE 29 22638 - 23579 865 313 aa, chain - ## HITS:1 COG:no KEGG:PPE_00692 NR:ns ## KEGG: PPE_00692 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 14 306 14 267 271 291 47.0 3e-77 MAIPFEIVMDQSNVIRGDFYPASSIARGILIVSHGFKGFKNWGMFPYAAAKLAQDVDVIT FDFTHNGVGEDGQSFSELDKFAKNTYSCELDDLSTLISVLTDEWDFKNKLLKSDRLKPVV FYPHHSRGINLSNEEHQHRGSANPVNKLPVFLLGHSRGAGVSLIYALDHPTEIAGVVSWN GITQVDIFDEACKEQMRSEGRAYIANARTKQQMPLDKVILDDLEARKEDFNILERMRGAA FPVVLIQGEEDHANLRAGSEKLVENQPKVQWIQIPGANHTFNTVHPFAGTSAELEQAIEH TLQFLKSRVVPTE >gi|333608436|gb|AFDH01000018.1| GENE 30 24099 - 24266 137 55 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_3851 NR:ns ## KEGG: Pjdr2_3851 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 1 54 1 54 54 75 68.0 6e-13 MQWVYWVKLYDSKFQAGVLAKRMEEDWWIYGYECPSEVEVFKSKKGRFGVRYSVY >gi|333608436|gb|AFDH01000018.1| GENE 31 24393 - 24923 518 176 aa, chain - ## HITS:1 COG:BH1441 KEGG:ns NR:ns ## COG: BH1441 COG1267 # Protein_GI_number: 15614004 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylglycerophosphatase A and related proteins # Organism: Bacillus halodurans # 1 146 1 145 183 179 62.0 3e-45 MKRQVHSREIKKVVMQRLADRGASLEDIAEIVYAMQAPYHPGLSMDTCMQSIQAVLGKRE LQHAILVGTELDMLAEQKKLTEPLQTILDTDESLFGCDETLAIGSVFGYGSIAITTFGYL DKEKTGLIKRLDTKTGGAVHTFLDDLVAAIASAASGRIAHRSRDEVEREVPDEDNE >gi|333608436|gb|AFDH01000018.1| GENE 32 25088 - 25600 554 170 aa, chain + ## HITS:1 COG:BS_yjcG KEGG:ns NR:ns ## COG: BS_yjcG COG1514 # Protein_GI_number: 16078250 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 2'-5' RNA ligase # Organism: Bacillus subtilis # 1 168 1 167 171 138 42.0 5e-33 MMYGIAILPSAEIKEFANSYRKRFDPYYRVISPHITVREKEEWTEEQLQAAISHLEDLSR TVSPFQLTFNRFSSYFPVNNVIYLALEQVEPVIDLHDNLCTGPLVDTEKAYNYHPHLTIG QKLGADELHDVLASVKNTPVDFSFNVDSIQLLGKQENGEWSVIRSFPLQG >gi|333608436|gb|AFDH01000018.1| GENE 33 25724 - 27493 1191 589 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKSQWKTTVSSVFLSAALLASAVPALAAEPGKPAPAQASASAPTAYKLTNDLQVEMKSVL NEKTADGTRLGAVVRMKNTSSKVVRVPEYEVRMKTKDGVELRLQASLGSPRSIQPKSQVE LSYLATVDSGEGVELSELRWVDIDVYVYPKKETLQLSVPVSDLVWNGTETSEIPSASVKK WGEAFTIPSLQTPLEFKTTSISRDTVGTKTNSVVQMLVTNPSTKRQALPNIALEGKSGLQ TYDSNPSDATLTLEPGEKKYIHFVIPTELNTELQSLNVVTAEKYIDAQEKPVMYSVGRVH IMLPAKQADALPVQGVYAFGASMKMDPLNETIHPNLDVSLVELHMQQNDEDGFKTAIAKF KLTNKSGNPLDVPGFATDLVSRDGYTYNGNRQEKTSQRVLPNASHVVTYSYVLPASETGE GLKMALYETYGLFAAEAASPAPATPVASYKSLLTAYSVNLQPQPESKDELKLYPLTVKVN NWEISAMFNQQQNYNYRLKLSLDIEQEKDVLIDRTFSQLQFDLYDNGGTLINSVKSPFVG ENKLQKGSNTINFGAESMQLDYPVMIKVYESFVNDKGETAKRLLTTFKQ >gi|333608436|gb|AFDH01000018.1| GENE 34 27520 - 28788 1281 422 aa, chain - ## HITS:1 COG:all7632 KEGG:ns NR:ns ## COG: all7632 COG0845 # Protein_GI_number: 17158768 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-fusion protein # Organism: Nostoc sp. PCC 7120 # 44 409 60 452 561 82 24.0 1e-15 MKRPLATIVKQSTKLVGIVALTTALAVGCSNKPLAGPQDTTQGQESQIKTVKTVKVTKEK ISDPLEQVANVISSVQLEVISKAGGDVQQVYKKRGDMVKKGELLFRIDPSDLQLQKEQGQ LGIKSAQAQLKQAKEELANAKTDLDNNIVKAEQGIRDAEKNFNKIRNDYDEGTVTKIQLE QEETKLNSLKLDLSTLKQKRKTLDNTDSLAAAQVAIETSGLSVKKAERELGNTEVKAPVS GVLTDFPVEAGMTVGQGFKAGVIQQLNPILIKADLTEEAVNLVRDKKELNFYVPGTTELT KAPIKYISDVLDSQTKAYTLELEVSNADQKLKPGQKVQIQLTDEAEQTVAAIPTLSIVRE GSDSFVFVLNGDTVEKRKIQLGRLKETMQEVISGVSENEQIVISGQHQLKDKEKVTTAAA AN >gi|333608436|gb|AFDH01000018.1| GENE 35 28820 - 31918 3127 1032 aa, chain - ## HITS:1 COG:BS_yerP KEGG:ns NR:ns ## COG: BS_yerP COG0841 # Protein_GI_number: 16077739 # Func_class: V Defense mechanisms # Function: Cation/multidrug efflux pump # Organism: Bacillus subtilis # 3 1010 19 1058 1065 527 34.0 1e-149 MTSFSMKNVAALFIIMLLVFAGGIFATTKLKVESMPDISFPMVVISTQYTAPPKDVLDQV TKPLEKAVAGFDGIKNLSSTSSDNYSQITIELDQDIKPKNAKQDLEALVSNVKLPQQAEK PKVLTEGFSSQPVYYLGVYGNDGMNQAELDKIYKDTILPGFNTIKGIDHVDSVGNQEATL SIKLNENTINSYGLTPTDVSNSIRAALSASPAGTVEFNGTTQMVRVTGQIDTIYSLDNLT LTTPKGSVLQLKDLGKIEAISESQFITRLDGKPAIGVQLYKTKSANAVNFADEADALMAN WEKTLPGVKFKTVYNSAVEIKKSIHGMVQEGGMGALLASVMILLFLRNIRMTLIVLVSIP LSILITLLMMVPLNISLNIMTLGGMAIAVGRVVDDSIVVIENIYSQLQKAQERGESVIKL ATAQVASAITSSTITTVGVFGPIAFVSGVIGEVFRPFALTLVVALLSSLLVALTVIPMLA KLLVLKSKKLGNHDENHVGKFALVYKRVLEWSLNNRIKTLLFSGILFIASLVLIVPQLAV TYMPEDQSARQMIFQIKMPNDTSIETMDEKSKQLEQMMREAKDASGNPQFTYNESMVGYA FSKDVAPYRAMMFTEANENSNAEQVFKAYKEKILYELPKGSEVDGSLIAAGAGGGSTDFS YSLKGDDMLYLKQAAAQVKEKMKEFPDLYEVKDSLSDSKTEVEVTVDQNKARLYGLSSAQ VLEMVNSWIGVSKLGDLKFDNVTYETKVELDPQYKNSVNKIGTFLLKSPTGQTVQLNEIA KITQIEAPTAITRENQTQTLKVTAKIKSADKGGVSGKVAAELNALELPAGVNREVKGVSD DIASGFSEMFAAMGASIFIVYLVMVLAFGNASAPFAILFSLPLAVIGGLFGLLVTGESLN ITSLIGFLMLIGIVVTNAIVLIDRVQQLREQGVEVRESLISAGLTRLRPIIMTAGATVFA LMPLALGLSKGTIISKGLAVVVIGGLVTSTVLTLVVVPIIYELIESFKRRSSNAFHRKPK KNKVDTVPAAKS >gi|333608436|gb|AFDH01000018.1| GENE 36 32201 - 34333 2305 710 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_5780 NR:ns ## KEGG: Pjdr2_5780 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 23 705 21 686 698 247 27.0 1e-63 MRNKMAARATALALILTLSTGGVLAATPAAAASGQPALGSVAAGASGSFELQNIQLLPDQ DGNIVTFTVGVYNKSAADLSLVDYWVRLKSKTGHTYTVRLMPLDKEVKKIGANSSGQVSY YAKVGSGEKLQDLQVQFIKWDFSQPNSERILGQVSVPASYTGVTPTGQNADFQVGSSELR ASTEKFTNGKNEKYYLPAISLQLENIGAAAVTLPEVKFSVRTPEGLLYPLDAKNAKDLKI SPKETKTVQLSGAIPLKAGEKGWELVITRIHPELKFNTLLAAYQLPAVSKPAGGEAGKET QFMNKSGLYTAKLGGIYRLPWEDQDILTANVTLSNKGEESLPIPDMTAYFLLDNAVKVEA KLVRTGKVIGIDPGSSLSVEALGKIPYTYAFKEVKLVIQEKESDTQVNDLLELTAKPDLQ QLPFVGLGAKYAREEIGRKAQYTVAEINSYEGLSGSIVSAELEIENAEKRFAPVTGLVAH FQMKDGTVFPASVSDIKKTVAPGGKARLNVWAALPKGTDMENVRLLIGDSVTLETGEGKQ GEGQQTVKTDAYVRPVTFALPKEKKDVKDKLKDITLFPYTVSMSRINTSINNDVLTLKFD YDIRKQLLTETAPEGHKLVLVFEDYKGNKSFEKAYELKNWEPRDGKSAEQVTDNELRIGK KENFTIQLQDADLIFKQRFLDKYHLSVYHEFQGQRKLLAKQSIDWFTYSD >gi|333608436|gb|AFDH01000018.1| GENE 37 34596 - 35966 1274 456 aa, chain + ## HITS:1 COG:BH3875 KEGG:ns NR:ns ## COG: BH3875 COG0624 # Protein_GI_number: 15616437 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Bacillus halodurans # 7 455 6 454 458 542 56.0 1e-154 MKAKTESYASRHRERHLEELKELLRIPSISTLSEHKKDVHRCAEWLSGALTHAGLENVEI MPTAGLPIVYGDWLHAPGKPTILVYGHYDVQPADPLNEWHSEPFEPVIRDGKIYARGATD DKAQLWIHVKAAETFLQAVGSLPLNIKFILEGEEEITSPSLAPFVKEHAEKLKADAIVIS DTPMLEKGKPALLYGLRGVAGVEIEMLAARNDLHSGLYGGGVPNAVHALAGLLDSFHDEE GRVSIEGFYDRVIHLTEQERGELARVSQDEGKIREDLGLSELFGEKGYTFTERTTARPTL EVTGISGGFAGEGIKPIVPARASAKIACRLVADQRPDEIFELIERHVAAHTPAGLKASVK RVLQGNPFLTPADHPVMVAASAALEEAYGEKTALTRGGGSIPIVDVFERLLQAPVVMMGF GLPDENLHAPNEHFDLDNFDKGLQAVCGFWEKLANQ >gi|333608436|gb|AFDH01000018.1| GENE 38 36034 - 36540 437 168 aa, chain + ## HITS:1 COG:alr4468 KEGG:ns NR:ns ## COG: alr4468 COG1247 # Protein_GI_number: 17231960 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sortase and related acyltransferases # Organism: Nostoc sp. PCC 7120 # 8 167 4 163 163 203 58.0 1e-52 MQQDTYKLRDAVPADLPAIVHIYNSTIPGRMVTADLEPVTVQSRENWFAEHNPETRPIWV LEKDGKIWGWLSFQSFYGRPAYNGTAEVSIYLDGECRGRGLGRYLLEKAIAACPELGIKT VLGFIFGHNAHSLALFDRYGFAKWAELPRIAELDGIERDLIIMGKRVG >gi|333608436|gb|AFDH01000018.1| GENE 39 36939 - 37580 602 213 aa, chain - ## HITS:1 COG:BH2532 KEGG:ns NR:ns ## COG: BH2532 COG0461 # Protein_GI_number: 15615095 # Func_class: F Nucleotide transport and metabolism # Function: Orotate phosphoribosyltransferase # Organism: Bacillus halodurans # 11 210 5 204 210 246 60.0 2e-65 MNTVQSTEREIAASLLKIGAVALRPHEPFTWTSGIKSPIYCDNRLTMSHPEIRDAIAEAF AAKIRSEYPQAEVVAGTATAGIPHAAWVAQKLGLPMIYVRDKAKGHGKQNQIEGALAAGQ KVIVIEDLISTGGSSLKAALAVNEAGGQALGVLAIFSYQLDKGIQAFAEAGIPLDTLTNY SKLLEVAVEQGAIAQADLELLRSWREDPASYGV >gi|333608436|gb|AFDH01000018.1| GENE 40 37641 - 38372 629 243 aa, chain - ## HITS:1 COG:SP0701 KEGG:ns NR:ns ## COG: SP0701 COG0284 # Protein_GI_number: 15900600 # Func_class: F Nucleotide transport and metabolism # Function: Orotidine-5'-phosphate decarboxylase # Organism: Streptococcus pneumoniae TIGR4 # 11 239 5 226 233 211 51.0 8e-55 METARAQSAGRIMVALDFASAVEAETLIQELRGIPCYIKVGMQLFYAAGPRFVARLKDEG YNVFLDVKMHDIPNTVKGGSESVTRLGVDMFNVHAAGGIKMMEGALEGVEKALGGGAAKR PQVIAVTQLTSTSQMMLNEEIGIAGRVEDAVVRYARLARQAGLQGVVASPLEVSAVKEAC GADFITVTPGIRPAGAALGDQSRVMTPAEAFAAGTDYVVIGRPITAAPDPRQALEQILDS LES >gi|333608436|gb|AFDH01000018.1| GENE 41 38494 - 41703 3524 1069 aa, chain - ## HITS:1 COG:BH2536 KEGG:ns NR:ns ## COG: BH2536 COG0458 # Protein_GI_number: 15615099 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase large subunit (split gene in MJ) # Organism: Bacillus halodurans # 1 1067 1 1060 1062 1472 69.0 0 MPKNEKLKKILVIGSGPIVIGQAAEFDYAGTQACQALKEEGFEVVLINSNPATIMTDTNM ADKVYIEPITLDFVTQIIRQERPDGLLPTLGGQTGLNMAVELARAGVLEQENVKLLGTQL TAIEKAEDRDLFRDLMRELEQPVPDSTIVTTVPEAVDFANEIGYPIIVRPAYTLGGTGGG ICHSEEELVETVASGIRYSPISQCLVEKSIAGMKEVEYEVMRDANDNCIVVCNMENFDPV GVHTGDSIVVAPSQTLSDREYQMLRSASLKIIRALNIEGGCNVQFALDPFSFQYYVIEVN PRVSRSSALASKATGYPIAKMAAKIAIGYTLDELVNPVTGQTYACFEPTLDYIVSKIPRW PFDKFINANRKLGTQMKATGEVMAIGRTFEESIHKAIRSLEIGVHRLFLKETDLLDQETL ELRLQKPDDERLFLLAEAFRRGYTIEQLQELTQIDWWFLHKLDGMIRYEEEIASEEFDNE VLYDAKRMGFTDRAIAEIRSLAGRSTFVKEAEIREYRLNQNIKPVYKMVDTCAAEFEATT PYYYSTYEMEDEVLETEKQKVVVLGSGPIRIGQGIEFDYSTVHAVWAIQAAGYEAVIINN NPETVSTDFNTSDRLYFEPLFFEDVMNVIEREKPIGVIVQFGGQTAINLAAPLSKAGVRI LGSDLESIDKAEDRKKFEALLRKLDIAQPPGGTVTSVDQAVGTAAQFGYPVLVRPSYVLG GRAMEIVYSDEELLSYMEYAVKINPEHPVLIDRYMLGKEVEVDAICDKETVLIPGIMEHV ERAGVHSGDSIAVYPPQSLSDAIKNQIIDITTKIGLELQVVGLVNIQFVIHNEQVYVIEV NPRSSRTVPFLSKVTNIPMANVATRVIMGQKLTEMGYQSGLWPEDSFVSVKVPVFSFAKL RRVDTTLGPEMKSTGEVMGRDVNFAKALYKGLIGAGMKIPAAGAIIATVADKDKEEAVEI FGGFQRLGYKIIATGGTAQVLEAAGVPVTTVNKLSEGSPNILDLIRSGEAHFVVNTLTKG KTPQRDGFRIRREAVENGVVCMTSLDTVRALLHMLEAINFSSRSMPVYA >gi|333608436|gb|AFDH01000018.1| GENE 42 41690 - 42868 1114 392 aa, chain - ## HITS:1 COG:BS_pyrAA KEGG:ns NR:ns ## COG: BS_pyrAA COG0505 # Protein_GI_number: 16078615 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase small subunit # Organism: Bacillus subtilis # 4 360 2 356 364 464 60.0 1e-130 MKAKARLLLEDGTLFTGKSFGAEGDSVGEVVFNTGITGYQEVLSDPSYCGQIVTMTYPLI GNYGISRDDFESVRPFVHGFVVRRHEEAPSNWRAQYTLGNLLKEYGIIGISDIDTRMLTR KIRHHGVMKGLLTTSDRSVEELKEMLQTTPLMTTQVSTVSTPHVFSAPGNRERVVLVDFG AKSGIVRDLTKRGCDVVVVPQDSTAEQIMRLAPDGVLLSNGPGDPKDVPHAVETVRQLLG QVPVFGICLGHQLFALACGADTEKLKFGHRGGNHPVKDLISGRCYITSQNHGYTVKEESI AGTELTVTHINNNDRTIEGLKHNQYPAFSVQYHPEAAPGPFDSSYLFDDFLTMIRSHQTD NPQAPRQAQMLAAWKAEQSDNTSKGELHYAQK >gi|333608436|gb|AFDH01000018.1| GENE 43 42904 - 44196 1413 430 aa, chain - ## HITS:1 COG:BH2538 KEGG:ns NR:ns ## COG: BH2538 COG0044 # Protein_GI_number: 15615101 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotase and related cyclic amidohydrolases # Organism: Bacillus halodurans # 1 427 1 423 428 501 58.0 1e-141 MGMWILNGKMLDASGKETTGHVLVENGKIAAITDGQEQPDTTGHEVLEAAGKLVSPGFID MHVHLREPGFEHKETIASGTRSAARGGYTTIACMPNTKPVIDTVETVKLIQGKAENEGNG VKVLPYGCISRNQLGRELTDFEALKDAGVVAFTDDGVGVQSAQMMKDAMKRAAELGMPIV AHCEDETLVAGAPVNEGTFADKNGLKGIPNESEAIHVGRDILLAEATGVHYHVCHVSTEQ SVRLIRLGKQIGVKVTAEVCPHHLLLSEEDIPGMDANWKMNPPLRSKRDVEAVIEALEDG TIDIIVTDHAPHSEEEKAKGMQLAPFGIVGFETAFPLLYTKFVATGKWSLGFLIERMTSK PAEVFGLESGRLQVGSDADLTLVDLETEKEVDPAAFLSKSRNTPFTGWKLKGWPVLTMVG GKIAWTETNE >gi|333608436|gb|AFDH01000018.1| GENE 44 44326 - 45234 901 302 aa, chain - ## HITS:1 COG:BS_pyrB KEGG:ns NR:ns ## COG: BS_pyrB COG0540 # Protein_GI_number: 16078613 # Func_class: F Nucleotide transport and metabolism # Function: Aspartate carbamoyltransferase, catalytic chain # Organism: Bacillus subtilis # 11 301 3 289 304 283 53.0 3e-76 MGAVKSRTANHFIGLKGVSASEIKAILDRADFWENHPDKVTNRLKGTFVSNLFFENSTRT RFSFEMAEKRLGAQVLNFSAAESSVQKGESIYDTVRTLESMGIDAGVIRLKPVGLLAELA EKISVSLINAGDGNNEHPTQALLDLYTMRSHFGELRGLTVSIIGDILHSRVARSNLWALR EMGANVKFCAPANMQAPELSAYAPYVSMEEALQADVVMMLRVQLERHEKGMISSAEEYRA KYGLTMNRLQQMPAHAIIMHPAPVNRNVELDDELVEHARSKIFTQIHNGVPIRMAVIERT LS >gi|333608436|gb|AFDH01000018.1| GENE 45 45234 - 45785 488 183 aa, chain - ## HITS:1 COG:BS_pyrR KEGG:ns NR:ns ## COG: BS_pyrR COG2065 # Protein_GI_number: 16078611 # Func_class: F Nucleotide transport and metabolism # Function: Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase # Organism: Bacillus subtilis # 7 179 6 181 181 207 65.0 1e-53 MSEHMHVLLDEMAVRRALTRIAHEILEKNKGVGNCMLIGIRTRGIYLAQRVAERIQEIEG VPVPVGEIDITSYRDDRVKVRSVDTVPDGDNLNIQSKKVILFDDVLFTGRTVRAALDALI DLGRPEMIQLAVLVDRGHRELPIRPDYVGKNVPTSKLEKIEVHLTEVDEHDRVVIIQQQR GNE >gi|333608436|gb|AFDH01000018.1| GENE 46 46208 - 46918 915 236 aa, chain + ## HITS:1 COG:BS_ykuQ KEGG:ns NR:ns ## COG: BS_ykuQ COG2171 # Protein_GI_number: 16078482 # Func_class: E Amino acid transport and metabolism # Function: Tetrahydrodipicolinate N-succinyltransferase # Organism: Bacillus subtilis # 1 236 1 236 236 298 69.0 4e-81 MTQMNTEEIIQFIKTSQKKTPVKVYVKGNLEAVDFGTGIQSFISGKSGVLFGEWTDIQAI IESNQQNIEDYVVESDRRNSAIPLLDLKGINARIEPGSIIRDKVSIGNNAVIMMGAVINI GASIGEGTMIDMNAILGGRAQIGNMCHIGAGAVVAGVIEPPSAQPCVVEDDVLVGANAVI LEGVRIGQGSVVAAGAVVVEDVPEFTVVAGTPARVIKKVDDKTKSKTEILKELREL >gi|333608436|gb|AFDH01000018.1| GENE 47 47095 - 48360 1238 421 aa, chain + ## HITS:1 COG:BH2668 KEGG:ns NR:ns ## COG: BH2668 COG1473 # Protein_GI_number: 15615231 # Func_class: R General function prediction only # Function: Metal-dependent amidase/aminoacylase/carboxypeptidase # Organism: Bacillus halodurans # 1 413 1 368 371 471 56.0 1e-132 MTSPFIELRRQLHRIPEPGFQEFKTQRMLLDYLQTLPQERMEIRTWRTGILVYIKGTNPS KRFGYRADMDGLPIPEETGYPFQSEHPGYMHACGHDVHMSIGAGLVTQFAQRPMKDDLVV VFQPAEEGPGGALPMLASAELSDWMPEQMVGLHIAPEYPVGTIAVRPGILFANTSELFID LKGKGGHAAYPHLSNDMVVAASQLVGQLHTIVSRNINPLDSAVVTIGKMSAGTKQNIIAE NARLEGTIRTLSAESMQLIKTRIEGIVRGIESSFDCTASIDWGSNYLQVYNNEALTLEFM DWLQKTGTAAGAGVSGGSLADKSPTGTVYGSESAEAGQAQAGSPSSWSEPQIPVRLYECT EAMTGEDFGYFLEKIPGFMFWLGAETPYGLHHARIEPDERAIGVAIRTVDSYLRWKSAQS G >gi|333608436|gb|AFDH01000018.1| GENE 48 48438 - 49601 1150 387 aa, chain - ## HITS:1 COG:BS_patA KEGG:ns NR:ns ## COG: BS_patA COG0436 # Protein_GI_number: 16078464 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Bacillus subtilis # 1 383 1 380 392 449 58.0 1e-126 MQPIINPQVKEIQISGIRKIANKVAAMPDALALTMGQPDFPTPAHIVEAAQKALQAGRTV YTPNAGLPELRKAAADFVGSKYGLSYDGGSEVIVTTGASEALDITLRTILTPGAEVILPG PIYPGYEPLIRLCGGVPVYVDTRPYEFKMTAAALEPHLTERTRCVVLGYPSNPTGQIMTK AELAELAALLGSRNLYVISDEIYSELVYGAEHASIAALPGMREKTIVINGLSKSHSMTGW RIGFTFAPETLTQHMVKVHQYNVTCASSISQYAAVEALTAGRDDALPMRQAYENRLEHVY GRLQAMGLEAVKPQGAFYLFPSIARFGLGSEQFAYRLLEEQRVAVVPGDAFSPLGEGYIR LSYAYSQEVLDGALDRLEAFIRKLDRS >gi|333608436|gb|AFDH01000018.1| GENE 49 49679 - 50644 318 321 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit [Lactobacillus helveticus DPC 4571] # 70 306 51 279 285 127 35 3e-28 MSEQNNYELEQNGMDETESEPTRWQVEAEQNGERIDKLLSDALDGVSRTQIQQWIRDGHA RVDGRNVKPNYKLSEGQVVDLAIPDPEPLDIAAENIPLDVVYEDGDVIVINKPRGLVVHP APGHYSGTLVNALMHHCKDLSGINGVMRPGIVHRIDKDTSGLLMIAKNDQAHASLAEQLK EHSVTRKYVALVHGNLQHDHGTIDAPIGRDSYDRKLYTVTDKNSKHAVTHFAVLERFDGY TLVELKLETGRTHQIRVHLKFIGHPLVGDPSYGRSKGMTMDGQALHAQILGFTHPRTGER LEFEAPIPEDMADLLHRLRNL >gi|333608436|gb|AFDH01000018.1| GENE 50 50641 - 51138 536 165 aa, chain - ## HITS:1 COG:BS_lsp KEGG:ns NR:ns ## COG: BS_lsp COG0597 # Protein_GI_number: 16078609 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Lipoprotein signal peptidase # Organism: Bacillus subtilis # 1 161 1 152 154 144 49.0 1e-34 MYYYLLALIVFLIDQGTKWLVVKNIPLHDSIPVIGEFFQLTSHRNRGAAFGILQDQRWFF ILATLIIVVGVVLYLNRTRKAGQKLMSLALALLLGGAVGNFLDRLLFGEVVDFLQLHFQF SFFGKAVDYIYPIFNVADSAIVIGVILIFIDSIISWKNEKRGTAS >gi|333608436|gb|AFDH01000018.1| GENE 51 51281 - 52018 766 245 aa, chain + ## HITS:1 COG:BH2544 KEGG:ns NR:ns ## COG: BH2544 COG1734 # Protein_GI_number: 15615107 # Func_class: T Signal transduction mechanisms # Function: DnaK suppressor protein # Organism: Bacillus halodurans # 8 227 3 218 220 126 40.0 5e-29 MRILTSNQTDQLRQQLLIEKKELKEQLELDEHFGMSQAMGENTGELSTYDNHPADLGTEM FEREKDIALLENAERHLDQVNLALERLAAGTYGICIECGRTIPYERLSAIPTTQYCLEHV PNRHASDRRPVEEEFLAPPFGRTSLDERSDQNQFDGEDAWQIVESWGNSDSPAMAEDPNV GDYNAVYVEADELDGYVEPFESFLATDIYGNHVSVIRNKAYRSYMDNQEGDPLLEPDYTS EETQS >gi|333608436|gb|AFDH01000018.1| GENE 52 52056 - 52487 452 143 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_3872 NR:ns ## KEGG: Pjdr2_3872 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 55 140 33 118 120 115 61.0 5e-25 MDNLNEERNEWNERNQPVKARAPEEHAELEHPDLPTNAALTGDEEKRLIHHIHEKVTEIA ANIERTQIADYVTLMNKPRRLIFANLIAGISRGVGLGLGITVFAGTILYALKALGALNLP IIGTYIADLVEYVQFQLEGRRFY >gi|333608436|gb|AFDH01000018.1| GENE 53 52556 - 55318 2804 920 aa, chain - ## HITS:1 COG:BH2545 KEGG:ns NR:ns ## COG: BH2545 COG0060 # Protein_GI_number: 15615108 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Isoleucyl-tRNA synthetase # Organism: Bacillus halodurans # 1 917 1 915 921 1218 63.0 0 MDYGKTLQLLKTDFPMRGNLPQAEPKMQAHWEENDIYAKVQESRKGREKFILHDGPPYAN GDIHIGHALNKILKDIIVRFKTMQGYDAPYVPGWDTHGLPIEQAIANSGKVDRKKMSVAE FRKYCEEYALQWVERQKEQFKRLGIRGDWDHPYITLQPEYEAEQIRLFGEMVKKGYIYKG LKPVYWSPSSESALAEAEIEYKEKTSPSIYVAFDVAEGQGKLPQDAAFVIWTTTPWTLPA NLGISVHPDFTYAVVEVSGKKYVLAEGLLESAAKAIGWTDYSMVSTVKGSELENVTCKHP FYDRESLVMLGEHVTLEAGTGCVHTAPGHGEDDFIVGQKYKIGVLCPVDDQGHFTAEAPG LEGVFYEKGNKTILEWLENSGHLLHASSINHQYAHDWRTKKPVIYRATEQWFASIDKFRD EMLEEIKKIKWTPSWGEIRLHNMIADRGDWCISRQRVWGVPIPIFYCRSCNHPIVNDETI EHVAKLFEKEGSNAWFTLTEKELLPQGLSCPECGHGEFRKETDIMDVWFDSGSSHAGVLA KRPELQWPADLYLEGSDQYRGWYNSSLITGVAVKGQPPYKGILSHGFTLDGEGRKMSKSL GNTVDPSQVCNKLGADILRLWVSSVDYQSDVRISDNILSQITEVYRKIRNTLRFLLGNLS QFDPVKDRVDFAQMSELDQYAVIRLNRMTEKVTKAYDAYEFHVVYQAVHHFCAVEMSSFY LDIIKDRLYADAADDSARKASQTVLYDALLAITKLIAPILPHTADEVWKYIPGVELDSVQ ISELPEIRTDVYNQELEQKWDGFLNIRDEVLKALEEARKNKTIGNSLSAAVDLYPSDAAF KLLSGFDKLDTLFIVSAATLHNPSEKAPEGSYEAQDLAVQVSVAEGEKCERCWIVTPEVG QNKEHPTLCARCAEVVSRLE >gi|333608436|gb|AFDH01000018.1| GENE 54 55752 - 56237 583 161 aa, chain - ## HITS:1 COG:BH2546 KEGG:ns NR:ns ## COG: BH2546 COG3599 # Protein_GI_number: 15615109 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division initiation protein # Organism: Bacillus halodurans # 1 154 1 154 165 165 67.0 3e-41 MPLTPLDIHNKEFARSFRGYDEDDVNEFLDQVIKDYEAVIRENKELQNQILALQERLDHF SNIEETLSKTIIVAQEAADEVKNNAKKEAQLVLKEAEKNADRIINESLTRSRKVSMETEE LKKQASIYRTRFRTLLEAQLELLQDEGWKTLDHDKVLELEK >gi|333608436|gb|AFDH01000018.1| GENE 55 56347 - 57126 260 259 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227484957|ref|ZP_03915273.1| ribosomal protein S4e [Anaerococcus lactolyticus ATCC 51172] # 17 257 19 253 255 104 30 1e-21 MAKEIYGHFHPDEHAFVDRAQEWVENAAHHKVKRTDFLDPRQAFILRTLVNRNPDVNCRL DGGYPDAERQRAILGPDYLDLSGEDMGLRVLSVESGDSKFQALSHGDYMGAILALGMKRD KVGDINVSEQGCHFVVAEEAADYLHLNLSQVHRVHVTTEILPIDKLRPSAVKLEEMSLSV ASLRLDGIVSDVFRLSRAKVLIPIGAGKCKVNWKPEENPSVPLQEGDVVSLQGFGRFRVL EIEGVTKKGRTRMKVGKYV >gi|333608436|gb|AFDH01000018.1| GENE 56 57126 - 57401 327 91 aa, chain - ## HITS:1 COG:BH2548 KEGG:ns NR:ns ## COG: BH2548 COG0762 # Protein_GI_number: 15615111 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Bacillus halodurans # 15 70 14 69 84 69 66.0 2e-12 MVMNIYGLIDTLAQIYFYMIFGYVLLSWFPNARESFIGELLAKLVEPYLSAFRRFIPPIG PLDISPIVAMGVFWLVVAGLKVVVGYILRIF >gi|333608436|gb|AFDH01000018.1| GENE 57 57432 - 57857 398 141 aa, chain - ## HITS:1 COG:BH2549 KEGG:ns NR:ns ## COG: BH2549 COG1799 # Protein_GI_number: 15615112 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 5 141 3 146 149 115 43.0 2e-26 MGVMNKFMNFIGLQEEEEVVERERIVETPEEPETPVQEQRTKQSKNNIVSIHSQKNSRVV LHEPHSFDDSQEIADHLRSRRTVVVNLQRVRPEQAVRIFDFLNGTVYALNGSISKIGPNI FLCAPDSVEIQGSISDFLHEA >gi|333608436|gb|AFDH01000018.1| GENE 58 57894 - 58577 642 227 aa, chain - ## HITS:1 COG:BH2550 KEGG:ns NR:ns ## COG: BH2550 COG0325 # Protein_GI_number: 15615113 # Func_class: R General function prediction only # Function: Predicted enzyme with a TIM-barrel fold # Organism: Bacillus halodurans # 1 226 1 225 228 236 52.0 3e-62 MNLQARIEDVHHRIEAACRRSGRSPEDINVIAVTKYVSLDATREALDHGLTQVGENRWQD AKEKWEALGDRGDWHFIGHLQTNKVKDIIGKFAYIHSLDRASLAKELEKEAAKRDLSVKC FIQVNVSGEESKYGLPPQELKSFAKDLKQYPHLQIVGLMTMAPLEAEAEATRPVFRKLRE LRDALNAERILPEPLRHLSMGMSGDFEVAIEEGATWVRLGTVLVGKS >gi|333608436|gb|AFDH01000018.1| GENE 59 58626 - 59480 472 284 aa, chain - ## HITS:1 COG:BH2551 KEGG:ns NR:ns ## COG: BH2551 COG1496 # Protein_GI_number: 15615114 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus halodurans # 1 281 1 271 273 221 43.0 9e-58 MEPFIYKKSNSGEPELFVLERLQERFPFVQAGFTSRHGGVSSAPFDSLNLGLHVNDADED VVENRRRLAAALGVPFEALTFGEQVHGKEVAVIEKEQMGSGRISRADAIQDKDAFITAGK GIMLCALYADCVPLYLIDPVNRVVGIAHAGWKGTVQNIGAAALASMTRSFGTRPEDVYAV IGPSIGGCCYEVDDYVAGRVYESHLDTGISKKQTETVVIPRKDGKYQLNLQECNRQFLEK AGILSSHIEVTELCTSCSTDLFFSHRKEGGSTGRMAAWIGLRND >gi|333608436|gb|AFDH01000018.1| GENE 60 59664 - 59960 311 98 aa, chain - ## HITS:1 COG:BS_ylmC KEGG:ns NR:ns ## COG: BS_ylmC COG1873 # Protein_GI_number: 16078600 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 1 77 2 78 81 81 49.0 3e-16 MKISDFQTKDVINIVDGKKLGQISDLELELRQGRIDSIVVPNSSKFFGLFGGGTDLIIPW KNIVKIGADVVLVKLDEAKTYRAVEESDSADYNRSSRG >gi|333608436|gb|AFDH01000018.1| GENE 61 60149 - 60931 714 260 aa, chain - ## HITS:1 COG:BH2554 KEGG:ns NR:ns ## COG: BH2554 COG1191 # Protein_GI_number: 15615117 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit # Organism: Bacillus halodurans # 1 260 1 261 261 402 81.0 1e-112 MTRNKVEICGVDTAKLPVLTNVEMRELFTNLQTKNDRSAREKLVNGNLRLVLSVIQRFNN RGEFVDDLFQVGCIGLMKAIDNFDLGQNVKFSTYAVPMIIGEIRRYLRDNNPIRVSRSLR DIAYKALQVRDSLTNKNSREPTIYEISEVLNVPKEDVVFALDAIQDPVSLFEPIYHDGGD PIYVMDQISDERNKDMSWIEGIALREAMRKLGSREKMILSMRFFEGKTQMEVADEIGISQ AQVSRLEKSAITQMQKHVKS >gi|333608436|gb|AFDH01000018.1| GENE 62 61202 - 61924 844 240 aa, chain - ## HITS:1 COG:BH2556 KEGG:ns NR:ns ## COG: BH2556 COG1191 # Protein_GI_number: 15615119 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit # Organism: Bacillus halodurans # 6 240 3 237 237 358 81.0 6e-99 MRVKWKLQMLIFYYKILIFFGLKGEEIYYIGGSEALPPPLTREEEEYLLGKLPSGDAAIR AMLIERNLRLVVYIARKFENTGINIEDLVSIGAIGLIKAVNTFDPEKKIKLATYASRCIE NEILMYLRRNSKIRTEVSFDEPLNIDWDGNELLLSDVLGTENDTIYRNIEEQVDRKLLHK ALDKLTERERTIMELRFGLQDGEEKTQKDVADQLGISQSYISRLEKRIIKRLRKEFNKMV >gi|333608436|gb|AFDH01000018.1| GENE 63 61954 - 62877 615 307 aa, chain - ## HITS:1 COG:no KEGG:PPE_03121 NR:ns ## KEGG: PPE_03121 # Name: not_defined # Def: possible sporulation sigma factor processing peptidase (EC:3.4.23.-) # Organism: P.polymyxa # Pathway: not_defined # 1 305 1 304 328 312 48.0 1e-83 MVVYADLIFLVNVVMDAAVLLVTARTRRLSFKPWKLLLSSALGGSYVLLMFVPSLSFLFT FAAKIIMSLCMVWIAFGYGSLQRFLRNTGTFYVVNFVAAGGVFGLNYVFQTSGDVMNGLL FSQTGAASFNIRIETWAVIVLGAGSLVLHRLVMSGVKKKEELAVHLAEVSVIVDGADFRC TGLIDTGNQLYDPLTRTPVMVMEASQLGSMLPESWLRRIRAAEVEQIITAIGTEEDFIWQ DRLRLVPYRGVNRNTQFMLAIKPDKVVITYSSGQVETTKVLVGLDGGQLSGDGAYHAIIH PTLVAAG >gi|333608436|gb|AFDH01000018.1| GENE 64 63081 - 64229 981 382 aa, chain - ## HITS:1 COG:BH2558 KEGG:ns NR:ns ## COG: BH2558 COG0206 # Protein_GI_number: 15615121 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division GTPase # Organism: Bacillus halodurans # 1 379 1 381 382 457 73.0 1e-128 MFEFDLDMEQLAQIKVIGVGGGGSNAVNRMIENGVQGVEFITVNTDAQALHQARSEHKLQ IGDKLTRGLGAGANPDVGKKAAEESRDLIMNTLKGADMVFVTAGMGGGTGTGAAPVIAEI AKECGALTVGVVTRPFTFEGRKRAAQAEQGIAALKEKVDTLIVIPNDRLLEIVDKKTPML EAFREADNVLRQGVQGISDLIAVPGLINLDFADVKTIMTERGSALMGIGIATGENRAAEA AKKAIMSPLLETSIEGARGVLMNITGGTNLSLYEVNEAADIVASASDIEVNMIFGAVINE NLKEEIMVTVIATGFQDKPQQQQPPQPQNRRQGGVQQQQQQQQETPAETQQRVNNLRPFG GQPGDLEVPTFLRNRGRNNLDK >gi|333608436|gb|AFDH01000018.1| GENE 65 64452 - 65705 1028 417 aa, chain - ## HITS:1 COG:BH2559 KEGG:ns NR:ns ## COG: BH2559 COG0849 # Protein_GI_number: 15615122 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Actin-like ATPase involved in cell division # Organism: Bacillus halodurans # 1 417 1 424 425 439 55.0 1e-123 MSNNDIIVSLDIGTSKVRAIIGEVVNGTINIIGVGSADSEGIRKGAIVDIDQTVQSIRSA IDHAERMVGIQISDVYVGITGNHIALQDSHGVVAVSNEDREIGEEDIERVIQAARVIALP PEREIIGVVPNQYLVDGQEGIHEPRGMIGVRLEVESTIITGAKTGIHNLLRVVEKSGLKV AGLILMSLASGQLALSKDEKSIGTVLVDIGAGSTTIAVFDQGNLVATSTLPIGGDFITND ISIGLRTQMDIAEKIKLKYGCATIQDSAPDQVFKVNRIGSQVDKEFSQVDLANIIEPRVQ EIFHLIRAEASRLGYSDPAGGYVLTGGTVSLPGTLVIAQEELAAPVRIAVPDYIGVRDPA YTSGVGIIQFVCKFLRNRPVTAPKKQTANKPASVKTPQTEASPGWFDKVKNFLKEFI >gi|333608436|gb|AFDH01000018.1| GENE 66 66091 - 67026 696 311 aa, chain - ## HITS:1 COG:BS_divIB KEGG:ns NR:ns ## COG: BS_divIB COG1589 # Protein_GI_number: 16078588 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division septal protein # Organism: Bacillus subtilis # 4 229 14 235 263 100 26.0 4e-21 MPEENKVPVLPNPKPRRTRTNRKLLTLLFLFFVTILAVLFFRSSLSRISEIKIEGNELLS SEEIGQAAAVRKGDHFFAARSENVRERVAALRMVQSVEVSKHFPGQISIMVHEYPRVAFQ FGTDGVKQAVLADGSIVPVVKGDLPVDKPILTGWTENDPNRIALCKALAAIPAGYLSDIS EIRPDPSEAYKDKIKMYTRTKFEVVTTVGYLPNKIMNLSAYITSMQGSEVNSGVLVLLET DDHLPLDTSAAGNKGKAGTASTKKPDPIPKPDGSAKPTSTPKKDTTRKSDTGGKEGKTDT PGTSKGSPAPN >gi|333608436|gb|AFDH01000018.1| GENE 67 67120 - 68406 716 428 aa, chain - ## HITS:1 COG:all0174 KEGG:ns NR:ns ## COG: all0174 COG0766 # Protein_GI_number: 17227670 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine enolpyruvyl transferase # Organism: Nostoc sp. PCC 7120 # 4 425 9 434 447 381 51.0 1e-105 MEKLVIEGGIPLSGAVRIQGAKNAALPILAASIMASGTHTLRNVPKLLDIEVMLGILRSL GCSAEHKEDAVVLDTTGLNSTHVPEELMKQMRSSIFLMGPLLSRFGTVQVYQPGGCAIGE RKIDLHLRGLQALGVTIEETGSTIICTAEDLKGADITLDFPSVGATENIMMAAVLADGIT TISNAAREPEIQDLQNFLNAMGADIIGAGTDTITIRGVRSLHACTYRIIPDRIVAGTFMV AAAATKGSVTLEGVCPQHLNAAIHVLRRAGVQITVHDDIINVHAPTRPRAVERIVTAPHP SFPTDLQSQVMVLLSLADGISIMKETIFESRFKHVDELTRMGADIRVDFNSAFIRGVPRL YGATVEATDLRAGAALVIAGLAAHGTTVVEQIHHVDRGYDRIEEMLTRLGARIRRQAPVP DQAPVTGE >gi|333608436|gb|AFDH01000018.1| GENE 68 68422 - 69327 872 301 aa, chain - ## HITS:1 COG:BH2564 KEGG:ns NR:ns ## COG: BH2564 COG0812 # Protein_GI_number: 15615127 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate dehydrogenase # Organism: Bacillus halodurans # 1 301 1 301 301 303 50.0 2e-82 MHQLITDLQAAQVGEVLKNEKLAPYTTWKIGGPADLLVIPQDKQKLVETIRLLGQHKVPW TVVGRGSNLLVGDKGIRGVVIKLSRALETLRFDGSTVYAGGAYSFIKLSVMTGKEGLTGL EFAGGIPGSVGGAVYMNAGAHGSDVSRILKQAEVLLDTGELIIMQNSDLQYAYRHSVLHT LPGIVTEAVFELQPGDRKEIAGAMAAYKDRRLRTQPLQLACAGSVFRNPPGNHAAKLIEE AGLKGTRVGGAEISPLHANFIVNTGNASAEDVLALIALAQKTVREKSGVELQPEVLVVGE R >gi|333608436|gb|AFDH01000018.1| GENE 69 69538 - 70668 918 376 aa, chain - ## HITS:1 COG:BH2565 KEGG:ns NR:ns ## COG: BH2565 COG0707 # Protein_GI_number: 15615128 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase # Organism: Bacillus halodurans # 1 367 1 363 363 358 51.0 1e-98 MRIVFSGGGTGGHVYPALAIGEQCLQDHPDSKFLYIGTSSGLERDIVARSGLDMPFEAVE ITGFRRKLASLDNVKTVLRFLRGVGRAKSLLREFKPDAVVGTGGYVCGPVLYAAAKLGIP TLVHEQNAIAGLTNRFLSRYVSTVAVSFRGTEGIFPQAKKVVYTGNPRATSMVNADAARG FSSLGLTPDARLVVVVGGSRGAKAINEAMVELAPLVHELPGVQFVFGTGQPYFESTAQRI QEEAGSVPVNLQVLPYIHNMPEVLAASKLVVNRAGASTMAEITALGIPSILIPSPNVTNN HQEHNARSLSDEGGSVTLLEKDLSGRVLFDQIGKIMEDSVRWEHMAKQSAKMGQRDSAAL VVRELERIVSAGQRRR >gi|333608436|gb|AFDH01000018.1| GENE 70 70674 - 71771 1331 365 aa, chain - ## HITS:1 COG:BS_spoVE KEGG:ns NR:ns ## COG: BS_spoVE COG0772 # Protein_GI_number: 16078585 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Bacillus subtilis # 1 365 1 365 366 405 62.0 1e-113 MAKARSAPDVWILVSTLLILTIGVIMVYSASGVLAFREFGDWFYYLKRQLLFAVLGIVAM FFTMNTDYWVWKKYAKVGLLICFGLLLAVLIPGIGVVRGGARSWLGIGSFGIQPSEFMKI GMIVFLAKLLSDRQSQITLFTKGLLPPLGLVGLAFGLIMLQPDLGTGAVLVGASLLVIYT AGARILHLSYLAMAGVAGFVGLIIAAPYRLQRITAFMDPWSDPLGAGYQSIQSLYAIGPG GLAGLGLGMSRQKYSYLPEPQTDFIFSIIAEELGFIGGAAVLVLFTILVWRGMRTAITAP DTFGSLVAVGIVGMIAVQVIINIGVVIGMFPVTGITLPLISAGGSSLTLMLTSIGVLLNI SRYSR >gi|333608436|gb|AFDH01000018.1| GENE 71 71881 - 73269 1440 462 aa, chain - ## HITS:1 COG:BS_murD KEGG:ns NR:ns ## COG: BS_murD COG0771 # Protein_GI_number: 16078584 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramoylalanine-D-glutamate ligase # Organism: Bacillus subtilis # 1 462 1 450 451 385 45.0 1e-107 MKHPSEYRGKKVVVLGLARSGVAAAKFFHEMGADVTVNDRKTRETSPEADELEALGISVV CGGHPPELVGEDTALIVKNPGIPYGASPVVQAAEHGIEVVTEVEVAYHICAAPMIGITGS NGKTTTTTLIGLMLEAGKLNPIVAGNIGRALTEAAAEAKPSDWMVVELSSFQLKGTREFR PKIACLLNVYETHLDYHGSMEDYVASKAKLFANQKQDDIAVLNADDEVCRKLAGEVSSEV LLFSRQRELDKGVYLSGDGVLTYRDAEGGTYPILPAKELGIRGSHNIENALAASAVALSA GVPVEVIADVLRTFRGVEHRLELVGEFGGVAYYNDSKATNPAATTKSVEAFEQSVILIAG GLDRGSDYKEMLPLLASRVKAVVTLGETREKINRVAREAGLADIETVDTANSTEAIGEAV RAASKLAGEGDIVLLSPACASWDMFASYEERGRMFKESVHNL >gi|333608436|gb|AFDH01000018.1| GENE 72 73273 - 74235 1074 320 aa, chain - ## HITS:1 COG:BS_mraY KEGG:ns NR:ns ## COG: BS_mraY COG0472 # Protein_GI_number: 16078583 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase # Organism: Bacillus subtilis # 4 316 4 320 324 349 61.0 4e-96 MELKVILFTMGVAFLLALIMGPLFIPLLRRLKFGQTIRTEGPQSHQKKQGTPTMGGIIIL IALAIAALRFADSNTELWILLIASLGYGLVGFLDDYIKIVFKRSLGLTAKQKLIGQLVVS AVVCVLLVTSNHSTTLFVPVLDVSFDTGWLYFPLMTILMLGASNAVNFTDGLDGLLAGTS AIAFGAFTIIAMNNTQPEAAIFSAAMVGGVLGFLVFNAHPAKVFMGDTGSLGIGGGLVAV AIMTKAELLLAVIGGVFLIEILSVVIQVISFKTTGKRVFRMSPIHHHFELVGWSEWRVVT TFWAAGLVLAALGLYMNEVL >gi|333608436|gb|AFDH01000018.1| GENE 73 74411 - 75835 1515 474 aa, chain - ## HITS:1 COG:BS_murF KEGG:ns NR:ns ## COG: BS_murF COG0770 # Protein_GI_number: 16077524 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide synthase # Organism: Bacillus subtilis # 1 472 1 452 457 406 49.0 1e-113 MRKLPLTTIAELAGAKLLMPPGPDNGADGIVIDAVSTDTRTIAPGSLFVPLVGERFDGHE FAPDAAAKGASAALWLESREEGRPEGLPLLLVDDTLTALQKLAHAYRKSLNVKVVGITGS NGKTTTKDMMGAVLGTVYNVHRTKGNLNNHIGLPLTLLQLDDTTEVAVVEMGMSGRGEIE LLSEIAEPDIAVITMIGDAHLLQLGSREEIARAKTEILSGLKDGGTYVFHGDEPLLPLVL PDMKQPARLSQIRFGRGHTNDLYPTFIRMDGDGTHFSINPRGSESDKDAQKYYIPLLGEH NVDNALAAIAVGTALGVPDADIRRGLAGMQMTGMRIEKRLTSSGVTVLNDAYNASPSSMK ASIRLVEQLEGYPRKYVVLADMLELGEDEIRYHREIGSLLSPDALTGVYAYGPLGRQIAE AAGESFGPERVHWFEDKAELTAALHAALKSGDLVLIKGSRGMKLEEVAEALLAK >gi|333608436|gb|AFDH01000018.1| GENE 74 75832 - 77319 978 495 aa, chain - ## HITS:1 COG:BS_murE KEGG:ns NR:ns ## COG: BS_murE COG0769 # Protein_GI_number: 16078582 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl tripeptide synthase # Organism: Bacillus subtilis # 22 493 23 487 494 476 52.0 1e-134 MELKELASQLLICQLIGEETTEISGIATDSRQVRPGDLFVCVPGFVSDGHDFAPKAIELG AAALVTERKLELDVPQLIVKDARYAMSVLSACVYGFPSRKMKVIGITGTNGKTTTSFLVE HILRDQGFRTGLTGTISAKIGSKFIPMERTTMEASDLQRTFRLMADEGTDYCVMEVSSHA LDLGRVKGVRFRGGVFTNLTQDHLDYHETMDKYEAAKGLLFSRMGNEFTGDAGDKQYAVL NADDPSAERLAKLTSAEVITYGVNRDCDVKATNIRITAKGTEFDVVSFAGTEPMRMKLVG LFNVYNALAAISVSLAEGLSLSRIRESLGSMPGVDGRMEIVDEGQEFLVLVDYAHTPDGL RNALGSIREFAQGRIKCVFGCGGDRDRTKRPLMGKVTGELSDDVYVTSDNPRTEDPGMIL LDIVPGLVEAGVDESRYKLLVDRPEAIQKAIEEAGPQDVVLIAGKGHETYQDIAGVKHDF DDRLIARAALRRLLS >gi|333608436|gb|AFDH01000018.1| GENE 75 77420 - 79372 1799 650 aa, chain - ## HITS:1 COG:BH2572 KEGG:ns NR:ns ## COG: BH2572 COG0768 # Protein_GI_number: 15615135 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Bacillus halodurans # 1 641 1 641 644 776 59.0 0 MRVSSFTVRRRLFAALILGTVLFAALIIRLAYVQLWLGPGLSAKAEDSWRREIPFMANRG EIWDRNGEKLAYNISTPSIMAIPVQLKDPNATAAKLAEVLQAPVDSIYKQITKRERINEI KPAGRKITLEKAQEIKALNLPGIVVAGDNRRYYPFGSLAAHILGFTGTYNQGLTGVESKY DKLLTGIKGNVSYLADAANRKMPGSTEQYSEPKDGLNLQLTIDQHLQAVLERELDQAMVK YQPKHAIAIMMDPNNGEILAMGSRPTYEPSNFGKYPVETYNRNLPIWMTYEPGSTFKIIT LAAALEEKKVDLKNERFHDPGAIEVGGARLRCWKRGGHGSESFLEVVENSCNPGFVVLGQ RLGKETLFDYIKRFGFGRKTGIDLGGEENGIMFKPSQVGPVELATTAFGQGVSVTPIQQI TAVSAAINGGKLFKPHVAKSWIEPETGRVIETVKPELVDTVISEATSKQVREALESVVAK GTGGNAFIDGYRVGGKTGTAQKVVNGRYSPNEHIVSFIGFAPADNPKVVVYAAVDDPQGI QFGGLIAAPLVKNIMQDALRYMKVEPDKNQLTKKYKYGETPVVEVPDLVGATVQDIYEDL NSDFLIAKSGTGNTVISQAPKPGTRVDRGSTIRVYLSNPPEGAMDKKEGR >gi|333608436|gb|AFDH01000018.1| GENE 76 79458 - 81791 2279 777 aa, chain - ## HITS:1 COG:BH2573 KEGG:ns NR:ns ## COG: BH2573 COG0768 # Protein_GI_number: 15615136 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Bacillus halodurans # 8 743 11 690 723 392 34.0 1e-108 MVKKMKMRSLLIGGFFTLLFIVFLGRILWIQGVSASKLLNEAEKRWETDRVVPAERGKIL DREGRILAEEVPAYSVSLNPKVIYQTGLADDITAGLTEILKDNSDSPNLSDKIKGLATKK RAVDPAAAQSNAANAAEDDKKDNKKDAKKEPKPEDAYLVNVELNNEGKNIDKAKADQVQQ LVKKLQQQLNDKDKKKYGTQADVGIYLTTGKKRYYPGNSLAAHILGYTNREGKASMGIEA QLDEQLKGTPGSLSYNSDKNGVELVQSKSVYVPPVNGNYVKLTIDKNIQYYMENALSKVM DQWHPKGLMAIAADPKTMEILGMASYPNYNPNEFWKGGDQTNHNVQSQYEPGSTFKLVTL AAAVEEGVFNPGATFKSGSVQVPGRKPVYDHNRIGWGPISYLDGLKRSSNVAFVNLGYKM LGVERLKDYIDRFGFGKKTGIDLYGEVAGQTNLAYEVDYAAATYGQALTATAIQEAAAYG AIANGGKLMWPHVVKEIIDPKTQQPIQKIEPKVVGQPVSAATAKKVGEYLEQVVADQVKG TGKDAYIEGYRIAGKTGTANKVIPGQKGYAANKWVISFAGFAPVEDPQFVLIIIADEPEL GNNYLLGHYVAAPAFKEIMQNSLRYLRIPSSKQQAQVTPVQTSTQKAVDFGNMTAAQAKA AAERAGVDIETVGQGAKVVAQYPKAGTEIGPYQRVYLAMQAPAEIAVPDMKGKALRDALE LCTLLGIRTASTGEGYVVSQALQGEGSDRVLTLQLQPLGGEILTPPEEKQAVPEKSE >gi|333608436|gb|AFDH01000018.1| GENE 77 81827 - 82249 385 140 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_3897 NR:ns ## KEGG: Pjdr2_3897 # Name: not_defined # Def: cell division protein FtsL # Organism: Paenibacillus # Pathway: not_defined # 3 110 2 110 128 72 39.0 5e-12 MPGYIQGNLAEKSTATSQRVTVRETKKVIVKNKPLPVGEKLMYLLLVIVCVLVATGIVWR YTTIYQINSEIKTTKTTITMLKAENDANQQEVQKLKDPERLEAIAKEKGLKPAGDDQVRQ VTPGSGQASIDKKSSVAAGR >gi|333608436|gb|AFDH01000018.1| GENE 78 82263 - 83213 380 316 aa, chain - ## HITS:1 COG:BS_ylxA KEGG:ns NR:ns ## COG: BS_ylxA COG0275 # Protein_GI_number: 16078578 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis # Organism: Bacillus subtilis # 1 315 1 309 311 366 59.0 1e-101 MFHHITVLKEEAVDGLHIQPDGVYVDCTLGGAGHSSLIASRLGPEGLLIALDQDDAALAN AEHILAPYRDRVKIVKTNFRRIEEVLRDEPRAFRDGAPQVNGILFDLGVSSPQLDEAERG FSYHQEAELDMRMDRSTELTAKIIVNEWPEAEIARILFVYGEEKFSRRIAGAIVRARADG PIETTSQLVELIKEGIPAAARRTGGHPAKRSFQALRIAVNDELGAFEDALHQSVRCLAPG GRISVITFHSLEDRICKQIFSSYVGRCTCPPDFPMCVCGNTGVVKLVNRKPITAGSAELE HNTRARSAKLRIAEKL >gi|333608436|gb|AFDH01000018.1| GENE 79 83258 - 83689 434 143 aa, chain - ## HITS:1 COG:BS_yllB KEGG:ns NR:ns ## COG: BS_yllB COG2001 # Protein_GI_number: 16078577 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 140 3 142 143 211 71.0 2e-55 MGEYQHNIDEKGRLIIPAKFREALGVSFVVTRGLDQCLFVYPKSEWSVLEQKLKALPLMK ADARAFTRFFFSGATESELDKQGRVNIPNNLVEHAKLEKDCVVLGVSNRVEIWSKSVWES YFEQSEQSFNEIAEKLVDFDFDL >gi|333608436|gb|AFDH01000018.1| GENE 80 83884 - 84891 723 335 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_3900 NR:ns ## KEGG: Pjdr2_3900 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 1 333 16 341 344 185 39.0 2e-45 MIVALLIGASLTGCSAADKGASTADQKSGVAATTSANTELMKKEGADKQADGNSASPAPA AVNPSATPAAADGFDRKVIYKGNLAAEVEDYAKAQKALRELVTASGAYILQFTEDNTASE IGGTFTIKVAAGGFPSLLDGIEKISPTRQRNITGQDVTEEYVDLTSRLKAKEVVEARLLA FMEKATKSDELLAFSAELGKVQEEIERIKGRMRFLDQNVEYSTIELKLYQPKEGALLKGA GTPFGKQIGSTFTKSVDFMVMIFKGLVIFMTALIPVAAIALVIGLPIYFFLRSKSKRRIR QVEAQTPAQASDNQPLEDNAAPVQQAEQQDPEKEK >gi|333608436|gb|AFDH01000018.1| GENE 81 85175 - 86437 1679 420 aa, chain - ## HITS:1 COG:PAB1372 KEGG:ns NR:ns ## COG: PAB1372 COG0499 # Protein_GI_number: 14521701 # Func_class: H Coenzyme transport and metabolism # Function: S-adenosylhomocysteine hydrolase # Organism: Pyrococcus abyssi # 1 418 2 419 422 519 59.0 1e-147 MNAVERSIVADQSLAPEGHLKIDWVQAHMPVLNRIREQFEKEQPFRGLKVAISLHLEAKT AYLAKVVQAGGAEVTITGSNPLSTQDDVCAALAEDGITVFAKYNPDPKEYKELMIKTLET KPDLIIDDGGDLVTILHSERRDLLAGVRGGAEETTTGILRLKALDKEGRLEFPMVAVNDA FCKYLFDNRYGTGQSVFDGINRTTNLVVAGKTVVVVGYGWCGKGVAMRAKGLGAQVVVTE IDAIKAVEAYMDGFTVLPMSEAAKIGDYFVTVTGNRDVIRGEHFEVMKDGAILSNAGHFD VEVNKPELAAQSSSVRTVRRNIEEYQLKDGRKIYLLAEGRLVNLAAGDGHPAEIMDMTFA LQALSLKYVNERYEEIGKTVVNVPYELDEQVARYKLESLGISIDRLSDEQKAYLQSWQEH >gi|333608436|gb|AFDH01000018.1| GENE 82 86489 - 88123 1530 544 aa, chain - ## HITS:1 COG:BH2577 KEGG:ns NR:ns ## COG: BH2577 COG4365 # Protein_GI_number: 15615140 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 11 542 11 536 538 290 32.0 7e-78 MPWKAYQWKKSQPLTEDYIHHFDRVSALFDYNPWDKGSLHRRAEAVRQTEANRADRKRLA EVLLEYNRRIGNRETALSAAAGLAEENSLTVVGGQQAGLFGGPLLVIYKAITVLIAARQA QAELGTPVIPVFWIAGEDHDFDEVDHIQVQRPELDVHKLSIRRPWNLRTSVSRWQADEQT WEDALRRLDESLPDSPHKTELLSRLRSSMNGLATLSDTFAGWMAALFGDSGLVLLDADDS ALRKLEAPMFTRLVGANELLADALMRGRGELEALGYAPQVDVTDEQSHLFVIDPSGERVL LQRSGEGFADKKDLRAYSREDLLALAEREPERLSNGVLSRPLMQEFLLPVLGTVLGPAEV AYWAMTRDAFALHGMTMPIVLPRLEFTLVEDAVTKWMDRYDLSMDDVKAGIDERREAWLR AQSPFPVRERFEEARVRVKEVYTPLVDSLAAIEAGLPELGHTNLDKILHQIDYLERKAEQ ALARRHDTALSQWKRIELALMPLGKPQERVYNVCAYLNRYGDKWLQELLEADLPMDGGHY LVYI >gi|333608436|gb|AFDH01000018.1| GENE 83 88392 - 89559 959 389 aa, chain + ## HITS:1 COG:BS_ykuC KEGG:ns NR:ns ## COG: BS_ykuC COG0477 # Protein_GI_number: 16078467 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus subtilis # 1 388 1 389 430 375 54.0 1e-103 MNVFQNRMFVKLFTASFFSQLGTMIGNMAFAFFLLDRFSSQPFYMTLAEMMYSLPTLFVF FIVGVAADRMNRKSICLYSNYIRIGLTVLLFLSLFLEILPLTFLILFLRSAVAKFFAPAE TGLVQGILSKEQYMQAAGLNQTVFGLFMLFGTALGALAYHWIGVEGAVIIDGLGFILSAL LIRSCSFEEKVQQPNGPGKWRDMSVKTVWGDFAEGLKYIWRKPLLLSIITGFILFGFVNG GFTVLPLFSLKYKLAAYEYEKFASLLSVSLGVGVLVGSALGTILAKKIKPHVMIIGSVVS SGLMVIGINYVNDIWLFLIGFLFTGILIAPANIAIGGWMPQIVDGKMMGRVNAWIDPLMM GAQSLALGLIALFYPRFISLDWIYIVLGS Prediction of potential genes in microbial genomes Time: Sun Jul 17 07:51:21 2011 Seq name: gi|333608367|gb|AFDH01000019.1| Paenibacillus sp. HGF7 contig00269, whole genome shotgun sequence Length of sequence - 63701 bp Number of predicted genes - 68, with homology - 67 Number of transcription units - 27, operones - 13 average op.length - 4.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) + 5S_RRNA 95 - 214 91.0 # DQ062685 [D:368..491] # 5S ribosomal RNA # Paenibacillus popilliae # Bacteria; Firmicutes; Bacillales; Paenibacillaceae; Paenibacillus. - Term 279 - 322 3.1 1 1 Tu 1 . - CDS 483 - 998 271 ## Pjdr2_0010 hypothetical protein - Prom 1066 - 1125 4.5 + Prom 969 - 1028 4.2 2 2 Tu 1 . + CDS 1271 - 1456 235 ## PPE_00014 hypothetical protein + Prom 1473 - 1532 5.9 3 3 Op 1 4/0.000 + CDS 1568 - 3091 785 ## COG1982 Arginine/lysine/ornithine decarboxylases 4 3 Op 2 4/0.000 + CDS 3138 - 3803 432 ## COG0125 Thymidylate kinase 5 3 Op 3 1/0.333 + CDS 3823 - 4152 319 ## COG3870 Uncharacterized protein conserved in bacteria 6 3 Op 4 1/0.333 + CDS 4211 - 4657 337 ## COG1728 Uncharacterized protein conserved in bacteria 7 3 Op 5 7/0.000 + CDS 4678 - 5655 609 ## COG0470 ATPase involved in DNA replication 8 3 Op 6 . + CDS 5657 - 6223 128 ## COG1774 Uncharacterized homolog of PSP1 9 3 Op 7 5/0.000 + CDS 6196 - 6459 172 ## COG1774 Uncharacterized homolog of PSP1 10 3 Op 8 4/0.000 + CDS 6511 - 6834 258 ## COG4467 Uncharacterized protein conserved in bacteria + Term 6841 - 6875 4.4 11 3 Op 9 1/0.333 + CDS 6909 - 7706 497 ## COG4123 Predicted O-methyltransferase 12 3 Op 10 . + CDS 7713 - 8810 793 ## COG0313 Predicted methyltransferases - Term 9041 - 9091 -0.3 13 4 Tu 1 . - CDS 9163 - 9417 234 ## COG2002 Regulators of stationary/sporulation gene expression - Prom 9604 - 9663 6.3 14 5 Op 1 . + CDS 9758 - 11032 1003 ## COG1078 HD superfamily phosphohydrolases 15 5 Op 2 . + CDS 11069 - 11836 908 ## COG0084 Mg-dependent DNase 16 6 Op 1 7/0.000 - CDS 11819 - 13081 874 ## COG4473 Predicted ABC-type exoprotein transport system, permease component 17 6 Op 2 . - CDS 13078 - 13821 261 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 18 7 Tu 1 . - CDS 14256 - 14714 -176 ## + Prom 14641 - 14700 4.1 19 8 Op 1 4/0.000 + CDS 14785 - 15705 828 ## COG3583 Uncharacterized protein conserved in bacteria + Term 15763 - 15795 4.0 20 8 Op 2 7/0.000 + CDS 15812 - 16357 519 ## COG1658 Small primase-like proteins (Toprim domain) 21 8 Op 3 . + CDS 16406 - 17326 1009 ## COG0030 Dimethyladenosine transferase (rRNA methylation) 22 8 Op 4 . + CDS 17389 - 18267 858 ## Pjdr2_0028 sporulation peptidase YabG + Term 18370 - 18422 6.6 + Prom 18571 - 18630 7.6 23 9 Tu 1 . + CDS 18651 - 18932 222 ## COG4466 Uncharacterized protein conserved in bacteria + Term 18939 - 18975 4.1 + Prom 18945 - 19004 1.8 24 10 Tu 1 . + CDS 19117 - 19296 167 ## PPSC2_c0033 small acid-soluble spore protein (alpha/beta-type SASP) + Prom 19554 - 19613 5.5 25 11 Op 1 4/0.000 + CDS 19652 - 20506 779 ## COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase + Prom 20586 - 20645 4.8 26 11 Op 2 3/0.333 + CDS 20702 - 21499 647 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins 27 11 Op 3 2/0.333 + CDS 21516 - 21902 434 ## COG0251 Putative translation initiation inhibitor, yjgF family + Prom 21916 - 21975 2.1 28 12 Op 1 4/0.000 + CDS 22017 - 22301 278 ## COG2088 Uncharacterized protein, involved in the regulation of septum location + Term 22324 - 22358 3.1 + Prom 22319 - 22378 1.9 29 12 Op 2 . + CDS 22417 - 23814 1818 ## COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) + Prom 23816 - 23875 4.8 30 12 Op 3 . + CDS 23896 - 24519 597 ## PROTEIN SUPPORTED gi|167463174|ref|ZP_02328263.1| ribosomal protein L25 + Term 24539 - 24585 14.2 - Term 24527 - 24570 8.1 31 13 Tu 1 . - CDS 24635 - 24835 280 ## PPE_00038 hypothetical protein - Prom 24981 - 25040 6.7 + Prom 24941 - 25000 2.7 32 14 Tu 1 . + CDS 25067 - 25636 516 ## COG0193 Peptidyl-tRNA hydrolase + Prom 25762 - 25821 2.3 33 15 Tu 1 . + CDS 25851 - 26081 226 ## Pjdr2_0038 hypothetical protein 34 16 Op 1 1/0.333 + CDS 26209 - 29730 3259 ## COG1197 Transcription-repair coupling factor (superfamily II helicase) 35 16 Op 2 1/0.333 + CDS 29717 - 30877 1278 ## COG0760 Parvulin-like peptidyl-prolyl isomerase + Term 30917 - 30964 14.1 + Prom 30935 - 30994 5.0 36 17 Op 1 . + CDS 31110 - 31652 562 ## COG2002 Regulators of stationary/sporulation gene expression + Term 31661 - 31711 5.1 37 17 Op 2 3/0.333 + CDS 31730 - 32353 543 ## COG2002 Regulators of stationary/sporulation gene expression 38 17 Op 3 4/0.000 + CDS 32398 - 34197 1647 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid 39 17 Op 4 1/0.333 + CDS 34305 - 35786 1626 ## COG3956 Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain + Term 35801 - 35850 2.7 40 18 Op 1 1/0.333 + CDS 35901 - 36173 187 ## PROTEIN SUPPORTED gi|148826039|ref|YP_001290792.1| 50S ribosomal protein L35 41 18 Op 2 . + CDS 36173 - 36433 282 ## COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) + Prom 36450 - 36509 1.9 42 19 Op 1 . + CDS 36555 - 36836 385 ## Pjdr2_0053 sporulation protein YabP 43 19 Op 2 . + CDS 36869 - 37414 406 ## Pjdr2_0054 spore cortex biosynthesis protein YabQ 44 19 Op 3 . + CDS 37470 - 37811 223 ## BBR47_01150 cell division protein + Prom 37817 - 37876 5.8 45 20 Tu 1 . + CDS 37918 - 38400 379 ## PROTEIN SUPPORTED gi|218290661|ref|ZP_03494752.1| RNA binding S1 domain protein + Term 38436 - 38473 2.2 + Prom 38600 - 38659 3.3 46 21 Tu 1 . + CDS 38732 - 41224 2225 ## COG2208 Serine phosphatase RsbU, regulator of sigma subunit + Term 41309 - 41352 7.5 + Prom 41271 - 41330 1.8 47 22 Op 1 2/0.333 + CDS 41453 - 42187 632 ## COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain 48 22 Op 2 . + CDS 42171 - 43091 810 ## COG0515 Serine/threonine protein kinase 49 22 Op 3 10/0.000 + CDS 43176 - 44693 506 ## COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control 50 22 Op 4 11/0.000 + CDS 44734 - 45273 581 ## COG0634 Hypoxanthine-guanine phosphoribosyltransferase + Prom 45283 - 45342 5.5 51 22 Op 5 . + CDS 45369 - 47345 1403 ## PROTEIN SUPPORTED gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 + Term 47356 - 47410 8.3 + Prom 47397 - 47456 5.5 52 23 Op 1 10/0.000 + CDS 47560 - 48498 645 ## COG0379 Quinolinate synthase 53 23 Op 2 13/0.000 + CDS 48539 - 50170 929 ## COG0029 Aspartate oxidase 54 23 Op 3 . + CDS 50154 - 51020 529 ## PROTEIN SUPPORTED gi|163755345|ref|ZP_02162465.1| 30S ribosomal protein S6 55 23 Op 4 3/0.333 + CDS 51017 - 51790 794 ## COG1521 Putative transcriptional regulator, homolog of Bvg accessory factor 56 23 Op 5 1/0.333 + CDS 51814 - 52689 839 ## COG1281 Disulfide bond chaperones of the HSP33 family 57 23 Op 6 1/0.333 + CDS 52708 - 53658 725 ## COG0760 Parvulin-like peptidyl-prolyl isomerase + Prom 53661 - 53720 4.9 58 24 Tu 1 1/0.333 + CDS 53771 - 54709 963 ## PROTEIN SUPPORTED gi|148988856|ref|ZP_01820271.1| 50S ribosomal protein L9 + Term 54733 - 54781 7.9 + Prom 54740 - 54799 6.2 59 25 Op 1 35/0.000 + CDS 55004 - 56602 1015 ## COG0147 Anthranilate/para-aminobenzoate synthases component I 60 25 Op 2 9/0.000 + CDS 56626 - 57213 679 ## COG0512 Anthranilate/para-aminobenzoate synthases component II 61 25 Op 3 2/0.333 + CDS 57226 - 58092 443 ## COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase 62 25 Op 4 15/0.000 + CDS 58114 - 58944 753 ## COG0294 Dihydropteroate synthase and related enzymes 63 25 Op 5 17/0.000 + CDS 59034 - 59402 144 ## PROTEIN SUPPORTED gi|148994682|ref|ZP_01823786.1| 50S ribosomal protein L13 64 25 Op 6 2/0.333 + CDS 59399 - 59935 307 ## COG0801 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase 65 25 Op 7 2/0.333 + CDS 59887 - 60099 175 ## COG1396 Predicted transcriptional regulators 66 25 Op 8 1/0.333 + CDS 60096 - 61121 543 ## PROTEIN SUPPORTED gi|42631300|ref|ZP_00156838.1| COG0042: tRNA-dihydrouridine synthase + Term 61152 - 61202 4.1 + Prom 61123 - 61182 3.9 67 26 Tu 1 . + CDS 61269 - 61745 722 ## COG0782 Transcription elongation factor + Term 61791 - 61817 0.3 + Prom 61769 - 61828 4.9 68 27 Tu 1 . + CDS 61950 - 63449 1473 ## COG1190 Lysyl-tRNA synthetase (class II) + Term 63459 - 63500 10.1 Predicted protein(s) >gi|333608367|gb|AFDH01000019.1| GENE 1 483 - 998 271 171 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_0010 NR:ns ## KEGG: Pjdr2_0010 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 9 171 11 176 176 73 31.0 3e-12 MKKNTSSDAIIYTYTLLRRIPHHLLLLGVYYAFAAVWAVKALLTGSLLSLCLGYIFVQLL HMLAIRGYLHFVRKAEPQGWSFRFAHLWTGYIPAQYVMFRSFFRLHLHLLISGFAGILLL YPWFSAAALSNILFVHLWILGGRFYMFLMFRKQYQVGWLRLRANETSCYKQ >gi|333608367|gb|AFDH01000019.1| GENE 2 1271 - 1456 235 61 aa, chain + ## HITS:1 COG:no KEGG:PPE_00014 NR:ns ## KEGG: PPE_00014 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 8 61 8 61 61 73 64.0 2e-12 MEDPVLVKCIVCGEEKQEGIQIASEFICDACEAEIVRTDVMDVKYSFFIRQLKQIFYKQN A >gi|333608367|gb|AFDH01000019.1| GENE 3 1568 - 3091 785 507 aa, chain + ## HITS:1 COG:BS_yaaO KEGG:ns NR:ns ## COG: BS_yaaO COG1982 # Protein_GI_number: 16077095 # Func_class: E Amino acid transport and metabolism # Function: Arginine/lysine/ornithine decarboxylases # Organism: Bacillus subtilis # 6 493 2 473 480 335 40.0 9e-92 MPNRENAPLFEKMREHYERRPASFHVPGHKSGRGADREAAPFFEPLMALDYTEISGLDDL HQPEEAIREAQALAADCFGAEETFFLVGGSTAGNLAMIMSLCGPGDILLVQRNAHKSVLH GLMLAGAHAVFVSPQTDGESGIPASVRLSDVEDALSRYPEAKGLLLTNPNYYGMGVTLRP YADLMHRHGLPLLVDEAHGAHYGFHPALPESALACGADAVVQSTHKMLTAMTMGAMLHLR HDRMDRERISMLLAMLQSSSPSYPIMASLDLARRQMHLHGERLVAEGLKAVQRLRDGLED IYGFRQLKHHSAQTAYEHMDPFKVTIYDGTGTLSGSELQGFLEEAGCFVELAADKAVLLL LTPASTIEDAERALGACEAISKEYLTNKQELPGISPNSMYKPLLNSVSIPVPMNIPVTRD MKNSVQDSVCVMPIESSAGKRSAEMVIPYPPGIPLLYPGELIQEDTAAELKRLAESGARF HGSREAAKGNLRVLTDIPEDTHNSNIE >gi|333608367|gb|AFDH01000019.1| GENE 4 3138 - 3803 432 221 aa, chain + ## HITS:1 COG:lin2841 KEGG:ns NR:ns ## COG: lin2841 COG0125 # Protein_GI_number: 16801901 # Func_class: F Nucleotide transport and metabolism # Function: Thymidylate kinase # Organism: Listeria innocua # 1 210 1 207 208 172 45.0 3e-43 MKELFLTFEGPDGSGKTTQLRRLAESLQALGYDTVVTREPGGTPISDHIRSLVLTPDYKE MADHTEVLLYAASRAQHVREFIVPALKANRIVLCDRFVDASLAYQAYGLGISFDEVAAIN RFATGGLEPTRTYLLDVPVETSRRRLLARTQSAGGEGLDRIEQKGEAYHTRVREGFMKIL EQNPKRICLIDADRTQDEIAHDILQDCKQLLDRVFFPKPEV >gi|333608367|gb|AFDH01000019.1| GENE 5 3823 - 4152 319 109 aa, chain + ## HITS:1 COG:BH0043 KEGG:ns NR:ns ## COG: BH0043 COG3870 # Protein_GI_number: 15612606 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 1 109 1 109 109 174 75.0 4e-44 MKLVIAVVQDKDSNRLSNALIKEGFRATKLASTGGFLRAGNTTFMIGIEDERVPEVFKVI KANCKVRDQLVTPVSPMGGTTDSYIPFPVEVQVGGAAVFLLPVERFEHF >gi|333608367|gb|AFDH01000019.1| GENE 6 4211 - 4657 337 148 aa, chain + ## HITS:1 COG:BH1478 KEGG:ns NR:ns ## COG: BH1478 COG1728 # Protein_GI_number: 15614041 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 30 145 27 142 145 85 42.0 4e-17 MKINPGWQPIGKNVKVPETAPTLQSPPKDFSAFMLKHDEKVTMEQLNRMLQQIGLQGDRL SRSMKLRELRQYKLLIKQFLEETARQGVGLRETRGWDRRGRTKRYKLLEEVDGALLSMAD DLLETEQGRLEILQRIGEIRGMLIHFLF >gi|333608367|gb|AFDH01000019.1| GENE 7 4678 - 5655 609 325 aa, chain + ## HITS:1 COG:BH0044 KEGG:ns NR:ns ## COG: BH0044 COG0470 # Protein_GI_number: 15612607 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA replication # Organism: Bacillus halodurans # 15 323 16 326 328 206 38.0 4e-53 MSFQTIPGQETAKRILQSGLRQDRISHAYIFSGPVGTGRKQTALMLAKAIYCTNLKDDAC GECLECRKVEHGNHPDLYQIEPDGASIKIDQIRELQKQFAYRSAGSGTKIYILNQAEKMT VQAANSLLKFLEEPNSKVVAVLVTENGHALLPTIQSRSQWISFTPMPRAEMARVLLEEGH PAALVQPAIHLTAGLQAAKEMIQTNGFAEIRSTMIQLLRETLTRYPSSFVTLQQKWIKAG LADHTALLFDLMILWLKDMVSLRIGRKENFVYIDQMDWMGPLSFKRETGEWVRLLAQAVE LQKRLRFNANPQLVIEKMLVDIQGV >gi|333608367|gb|AFDH01000019.1| GENE 8 5657 - 6223 128 188 aa, chain + ## HITS:1 COG:BH0045 KEGG:ns NR:ns ## COG: BH0045 COG1774 # Protein_GI_number: 15612608 # Func_class: S Function unknown # Function: Uncharacterized homolog of PSP1 # Organism: Bacillus halodurans # 1 116 1 116 275 164 66.0 7e-41 MYSVVGVRFKKAGKVYYFDPIDLPVEQENAVIVETARGIEYGRVVIGKKTVQENDVVLPL KKVIRIANPTDAQLVEENKKAAKDAFGICLNKIKDHQLKMKLVDVEYTFDRNKIIFILRL REGLTSGSWLRTWRAFSERVSNSVRSGYGMKPKCWAVSDRAAESYAVLHSWGISNRYRSR WPRTRTCP >gi|333608367|gb|AFDH01000019.1| GENE 9 6196 - 6459 172 87 aa, chain + ## HITS:1 COG:BS_yaaT KEGG:ns NR:ns ## COG: BS_yaaT COG1774 # Protein_GI_number: 16077100 # Func_class: S Function unknown # Function: Uncharacterized homolog of PSP1 # Organism: Bacillus subtilis # 1 86 181 266 275 102 52.0 2e-22 MAKDQNLSLNPTKISGLCGRLMCCLKFEHDNYESAKDSVPSVGTYVITSLGNGKVLSLNM NEKTCKVQLYDIGKIMDLPFDDVAEQD >gi|333608367|gb|AFDH01000019.1| GENE 10 6511 - 6834 258 107 aa, chain + ## HITS:1 COG:BS_yabA KEGG:ns NR:ns ## COG: BS_yabA COG4467 # Protein_GI_number: 16077101 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 107 6 118 119 105 53.0 2e-23 MFAQIDGLEEQIGKAYAELGDLKKTIISLLEDNQRLMMENQQLRKLLKQGDAEETDSEPV KGVEPVIGEGYDNLARLYYEGFHICNVYYGHLRTEGDCLFCLSFLNK >gi|333608367|gb|AFDH01000019.1| GENE 11 6909 - 7706 497 265 aa, chain + ## HITS:1 COG:BS_yabB KEGG:ns NR:ns ## COG: BS_yabB COG4123 # Protein_GI_number: 16077102 # Func_class: R General function prediction only # Function: Predicted O-methyltransferase # Organism: Bacillus subtilis # 3 247 2 247 247 290 56.0 2e-78 MQVALHETERIDDLLTHDLKIIQSEEVFAFSLDAVLLARFCTVPPRGKIVDLCSGNGVIP LLLSTRTPAAEIWGVEIQERLAGMGRRNIELNGLQERLHMVHADLKQIHRTLGASGYDLV TVNPPYLPVPAGEQNRNEHVAAARHELFCTLEDVVASSAKLLKAGGKMAMVHRPNRLVDI CTLMRQYRVEPKRVRFVHPRQGEEAMMVLIEGIRDGKADMRTLPPLFVHEEGGRYCGELH AVFYGEKSELEAGGQKSPENERNRG >gi|333608367|gb|AFDH01000019.1| GENE 12 7713 - 8810 793 365 aa, chain + ## HITS:1 COG:BH0049 KEGG:ns NR:ns ## COG: BH0049 COG0313 # Protein_GI_number: 15612612 # Func_class: R General function prediction only # Function: Predicted methyltransferases # Organism: Bacillus halodurans # 88 360 14 284 289 318 58.0 2e-86 MNFNIQRSYIMKKDDQRITGKEGDAADTAENIKDRAALEVEDSTNTERQTGADTFQKGTY GHDAISSTPEQVQGRARGRKPEKSIGMGMLYLVGTPIGNLEDMTYRAVRVLKEADLIAAE DTRQTRKLLTHFDISGRLVSYHEHNKQASGPELVRLMSEGQTIALVSDAGLPAISDPGHD LVRLAIEAGVTVVPIPGANAALSALIASGLPTDEFTFNGFLPRDKKDQQRELARLAPAQG TLLFYESPHRVVRTLEQMLESWGDREICLARELTKRYEEFGRGRISGALAHLGEHPPQGE YVVLVEGRSAAETAEAEAAWWKELSLEEHAAHYMGQGMSKKEAIKKTASDRGLPKRDVYN ELLQN >gi|333608367|gb|AFDH01000019.1| GENE 13 9163 - 9417 234 84 aa, chain - ## HITS:1 COG:CAC3647 KEGG:ns NR:ns ## COG: CAC3647 COG2002 # Protein_GI_number: 15896880 # Func_class: K Transcription # Function: Regulators of stationary/sporulation gene expression # Organism: Clostridium acetobutylicum # 2 78 1 77 81 119 74.0 2e-27 MMKSTGIVRKVDELGRVVIPIELRRTLGIGEKDALEIYVDGERIMLKKYEPACIFCGNAE NVTYFKGKIVCHECLNEMPIPVTK >gi|333608367|gb|AFDH01000019.1| GENE 14 9758 - 11032 1003 424 aa, chain + ## HITS:1 COG:BS_ywfO KEGG:ns NR:ns ## COG: BS_ywfO COG1078 # Protein_GI_number: 16080812 # Func_class: R General function prediction only # Function: HD superfamily phosphohydrolases # Organism: Bacillus subtilis # 3 406 10 412 433 464 58.0 1e-130 MIEEKVFKDPVHKYIYVQDRTVWDLINTREFQRLRRIRQLGTSFLTFHGAEHSRFSHSLG VYEITRKIISQFERNSYADWPEEERLLCLCAALLHDVGHGPFSHSIEKVFGTNHENWSCR IILGDSEVNQVLSRVSPTFAHDVAGVICKTYRKEIVTSLVSSQLDADRMDYLLRDAYFTG VNYGTFDLERILRVVRPYKGKIVVKESGMHAVEDYLMSRYQMYWQVYFHPVTRSAEILLG KVLECAKALFEDGYSFTFMPEPILHLFQGKLSLEDYFLLDESLMQTVLMYWSLEKDPVLA DLSGRFLHRRLFKFSAVEEWDKELLTEFRDALVEAGFDADYYLELDFPSDQSYDVYRPDT GKEDKQPILLLDGQDKLTEISARSEIVKSISGIHMGQHRIYYPAELFEKEGGKAAALRKK LFDA >gi|333608367|gb|AFDH01000019.1| GENE 15 11069 - 11836 908 255 aa, chain + ## HITS:1 COG:BS_yabD KEGG:ns NR:ns ## COG: BS_yabD COG0084 # Protein_GI_number: 16077107 # Func_class: L Replication, recombination and repair # Function: Mg-dependent DNase # Organism: Bacillus subtilis # 1 252 1 252 255 344 63.0 1e-94 MLTDTHTHMNNEAFNEDRDDAIQRAWDNGVTRIVNVGFNRETIPSSIELAEKYDFIWTTV GWHPTDAIDMRPGDLEWIEDLCKHEKVVAIGEIGLDYHWDTSPKDVQAKVFREQIRLARK VGLPIVIHNREAHQDIVDILKEEKAAEVGGIMHCYSGSWETAKQCLDMNFHISFGGPITF KNAKQPKEVLKQVPLDRLLIETDAPYLTPHPFRGKRNETSYVRLVAEAAAELRGMSLEEL AKVTTDNAVRLLGLK >gi|333608367|gb|AFDH01000019.1| GENE 16 11819 - 13081 874 420 aa, chain - ## HITS:1 COG:BH1192 KEGG:ns NR:ns ## COG: BH1192 COG4473 # Protein_GI_number: 15613755 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Predicted ABC-type exoprotein transport system, permease component # Organism: Bacillus halodurans # 18 385 6 373 405 155 30.0 1e-37 MNQEAAVHREGTAGAVRQLWKRRFDHYRQETSRYWAYVARSQFFGFLFLIFIVSSYYYAK ILQQLPTSFPYIWIVLLVLVPALAAGSVRTLLKNADRVFLLPLEPVMNVFFRAAFRYSLG IQAARSIVLMLIAWPLYKHCTGTEGQPLWLMAIFVLLIKTANLLGSWQEGRFSSPGWRLI SAGYRWVLSAAVVFALFGTGPLPGGVVLLAGLVVWAVMYRLGPGRRAIGVAWDYLIDNER KQQYRLYLFFSGFADVPQLPVRVKQRRWLAGITNRYSFRSSSLYLYLFTKTFVRSELLGI VVRITLVAGLAAAAVQSAPVAAAVCLVAMFISLIQLTSLEQSHRYTFWLQTYPVDPRRKV DAVVRIISAAFTLQGIVLTLLMVLSGAGVYAAAPLAGLALGLVLCATVTKRKFTASFEAE >gi|333608367|gb|AFDH01000019.1| GENE 17 13078 - 13821 261 247 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 1 214 1 214 311 105 31 8e-22 MNPILHISRLSGGYLPGKPILRDLEITVGQGEMVGLIGLNGAGKSTTIKHILGLLKPQEG SVRIRNRTLEEDPLGYRSSYSFVPESPELYDDLTIEEHLELTAMAYDIPKEAFKERAGRL MSEFQMEPKRKSFPGQLSKGMKQKVMIMNAFLVEPALYVIDEPFLGLDPLAMRSLLDIMA DFKSRGASFLICSHILATIERYCDRFVVLHQGRILAQGTLDELRQQTGLSDATLDELFYE LVRRNPA >gi|333608367|gb|AFDH01000019.1| GENE 18 14256 - 14714 -176 152 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKVKANEMIAARMIIRKFSCFHRNAKDMLDDRLTWVSDCEILPTSSVLLQSLASVIRMMI WTRLRFIWRFLTEPLQLASFPPADRLLSVSTGSASPPLDVYAGRIPVRYGTKKAIGKRKL PGGLCVSATKQNDTTVGISPGTLTRLADGFGP >gi|333608367|gb|AFDH01000019.1| GENE 19 14785 - 15705 828 306 aa, chain + ## HITS:1 COG:BH0055_1 KEGG:ns NR:ns ## COG: BH0055_1 COG3583 # Protein_GI_number: 15612618 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 8 177 105 274 320 102 35.0 9e-22 METRQWVLQRLLDEQAITIGEHDQVSMPLDGKIQDGQKIVIDHASPVQLTADGQTQTVHT IAKTVDQVLQDSNISLGEHDKVTPAKDTELSANAAIEVVRVKKETEEISEPIAFSVVKKS DEDLLKGKEQVVQEGQEGVLVKKKEKIFENGKLVSEQVIDQAVKNASVDKIVAVGTKNPV VTVAAASEPVKPKQVTKAGTDIDAKKILKNVTLTAYSSEEPGVGNRTASGTKPVQGQTIA VDTSVVPLGWWVYIEGIGYRRAEDTGGAIKGQKMDVYFDSMNYAKTFGVKRGYTVYVIGP NKPTQD >gi|333608367|gb|AFDH01000019.1| GENE 20 15812 - 16357 519 181 aa, chain + ## HITS:1 COG:BH0056 KEGG:ns NR:ns ## COG: BH0056 COG1658 # Protein_GI_number: 15612619 # Func_class: L Replication, recombination and repair # Function: Small primase-like proteins (Toprim domain) # Organism: Bacillus halodurans # 2 176 3 179 185 186 57.0 3e-47 MIKEIIVVEGKDDTTAIKRAVEADTIETGGSAINRAILDRIRLAQERRGVIVFTDPDHAG ERIRKIISGKVPGCKHAFLPQELAEKRGDIGVENATPDAIRSALANVKTEYEGAASLLTW EDLIAAGLVVHPDAAARRLEVGKKLGIGYCNGKQFYKRCAAFQISREEFEAAVEQLDRPD Q >gi|333608367|gb|AFDH01000019.1| GENE 21 16406 - 17326 1009 306 aa, chain + ## HITS:1 COG:BH0057 KEGG:ns NR:ns ## COG: BH0057 COG0030 # Protein_GI_number: 15612620 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Dimethyladenosine transferase (rRNA methylation) # Organism: Bacillus halodurans # 14 299 2 287 289 347 63.0 1e-95 MKLNEQGSGPSFASEDVATPKRTKDILNRHNLVLKKSLGQNFLTDGNVLRNIISAAELAP EKGALEIGPGIGALTQQLAKEAGRVVAVEIDQRLLPILRETLSPYPTAEVVHGDVLKLDL RQLIEEKFSGLSGISVVANLPYYITTPIIMKLLEEKLPLENIVVMIQKEVADRMAAKPGG KEYGSLSIAVQFYCEAELVTIVPRTVFVPQPNVDSAVIRLRLRKGPPVEVADEDFFFEVV QASFAQRRKTIYNNLGARFFSKENKRDLEALLLEAGIEPSRRGETLSMEEYGRVAEALRN CPTCSK >gi|333608367|gb|AFDH01000019.1| GENE 22 17389 - 18267 858 292 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_0028 NR:ns ## KEGG: Pjdr2_0028 # Name: not_defined # Def: sporulation peptidase YabG # Organism: Paenibacillus # Pathway: not_defined # 1 287 1 287 297 328 56.0 2e-88 MRQGDLATRKSYGNDIIFRIQEIDTTRAILRGVDFRLLADAPIADLSRVTAARDSDFPRV NLPRVGETIRSIRQFRQELYQLNDNLVRNKLPENTQYFEMPGKILHLDGDPNYLRKSMNL YGELRIPAEGFYVSESQMAVTLQRLLPQVKPDIVVVTGHDGLLKNRKKLDVHQLDSYKNS LHFVRAVQVARQYQSNRDALTIVAGACQSHFEALLQAGANFASSPARVLIHALDPLCIAA KASYTSIRETVSMVDLAGVTVTGLDGVGGIETRGSYRMGVPRLVNLTAEATV >gi|333608367|gb|AFDH01000019.1| GENE 23 18651 - 18932 222 93 aa, chain + ## HITS:1 COG:BH0059 KEGG:ns NR:ns ## COG: BH0059 COG4466 # Protein_GI_number: 15612622 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 6 83 5 82 88 115 71.0 2e-26 MAKNALLEIKRSLEPHVGQKIMLKANGGRRKTIERFGVLEETYPSVFIVKLDQEQQSFKR VSYSYADILTESVEVTVCDDDAAEELRITYIQH >gi|333608367|gb|AFDH01000019.1| GENE 24 19117 - 19296 167 59 aa, chain + ## HITS:1 COG:no KEGG:PPSC2_c0033 NR:ns ## KEGG: PPSC2_c0033 # Name: not_defined # Def: small acid-soluble spore protein (alpha/beta-type SASP) # Organism: P.polymyxa_SC2 # Pathway: not_defined # 1 58 1 58 59 77 75.0 2e-13 MSRRRRGVMSEDFKYELAKDLGFYETVEREGWGGIRSKDAGNMVKRALQIAEQNLKRRP >gi|333608367|gb|AFDH01000019.1| GENE 25 19652 - 20506 779 284 aa, chain + ## HITS:1 COG:BS_yabH KEGG:ns NR:ns ## COG: BS_yabH COG1947 # Protein_GI_number: 16077114 # Func_class: I Lipid transport and metabolism # Function: 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase # Organism: Bacillus subtilis # 1 283 1 282 289 374 65.0 1e-103 MKIYERASAKINLSLDVLRKREDGYHEVEMVMTMVDLADRIEMQELPRDTIIISSQAGYI PLDEKNLAFQAARLIKDRYDVRKGVYIHLDKKIPVAAGLAGGSSDAAATLRGLNRLWGLG IPTEELQKLGGELGSDVPFCVTGGTALATGRGEILHPVDNPLQCWVILAKPPINVSTSEV YGKLNAAGINHHPDTKRVLEAIRHKRFDELCGSLGNVLEEVTLQLYPQVRQMKEVMERLG ADGVLMSGSGPTVFGLVSKEAKVARIYNGLRGFCKDVYAVRMLP >gi|333608367|gb|AFDH01000019.1| GENE 26 20702 - 21499 647 265 aa, chain + ## HITS:1 COG:BS_purR KEGG:ns NR:ns ## COG: BS_purR COG0503 # Protein_GI_number: 16077115 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Bacillus subtilis # 1 262 9 270 285 316 59.0 3e-86 MVEMTQYLLFRPHTLIPLTTFAERYSSAKSSISEDLAIIKEVFEDEGLGELHTLAGAAGG VKFIPKVAKEASLSFVQDLCNQLEQPERVLPGGFLYMADIMGRPQVLNEIGKTFATAFAG RELDVVMTVETKGIPLAYATASFMNLPVVTVRRDSNATEGSAVSINYVSGSSKRIQTMSL ARRTLQEGARVLIIDDFKRAGGTIQGMVDLLGEFKATVGGVGVFIESNEVEEELVKDYIS LAKLTGVDSKTKQVTVVPGNYFDSE >gi|333608367|gb|AFDH01000019.1| GENE 27 21516 - 21902 434 128 aa, chain + ## HITS:1 COG:BH0063 KEGG:ns NR:ns ## COG: BH0063 COG0251 # Protein_GI_number: 15612626 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation initiation inhibitor, yjgF family # Organism: Bacillus halodurans # 1 123 1 123 124 170 72.0 6e-43 MRILSTNEAPAAIGPYSQAVQVGNLVFTSGQIPLNAEGQLVEGGVTEQTHQVFRNLQAVL KEAGATLQNVVKATVFIKDMNQFGAINEVYASYFGEHKPARSTVEVARLPKDVLVEIELI AAIAVENV >gi|333608367|gb|AFDH01000019.1| GENE 28 22017 - 22301 278 94 aa, chain + ## HITS:1 COG:BH0064 KEGG:ns NR:ns ## COG: BH0064 COG2088 # Protein_GI_number: 15612627 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Uncharacterized protein, involved in the regulation of septum location # Organism: Bacillus halodurans # 1 94 1 94 97 143 82.0 9e-35 MQITDVRLRRVNSEGRMKAIASITIDNEFVVHDIRVIDGNNGMFVAMPSKRTPDGEFRDI AHPISSTTREKIQAAVLSEYDRAAAEEEVIEEGA >gi|333608367|gb|AFDH01000019.1| GENE 29 22417 - 23814 1818 465 aa, chain + ## HITS:1 COG:BS_gcaD KEGG:ns NR:ns ## COG: BS_gcaD COG1207 # Protein_GI_number: 16077118 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) # Organism: Bacillus subtilis # 2 455 3 456 456 526 59.0 1e-149 MKLMAIVLAAGQGKRMKSKLYKVLHSVCGKPMVGHVLDTLEHIQTEKTIVIVGHGAEAVK GYLGDRAEYALQEQQLGTGHAVLQAKDVIGAEDGVTFVVCGDTPLVRPETLEKMLRLHQE KGAAGTILTAEMTDAAGYGRIIRGEGGRVDRIVEQKDCTPEEAAVREINTGTYCFDNRKL FEALENVKNENAQGEYYLTDVVGILKNAGEIVEAYCTPDEAEAIGVNDRIALSEAETLMR QRINRSHMVGGVTFIDPSQTYIEKDVVIGPDTILYPGTTLRGKTVIGSECVIGPNTEICD STLGDEVTVKQSVLQEAKVGSHANVGPFAYLRPGTDLGEHVKIGDFVEIKNAKLGEGSKV SHLSYVGDAVIGKNVNVGCGAITVNYDGFNKSLTEVGDDAFIGSNVNLIAPVKIGDGAYV VAGSTITHNVEDNDLAIARERQTNKKGYADRIRSKLKAKKENKHS >gi|333608367|gb|AFDH01000019.1| GENE 30 23896 - 24519 597 207 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167463174|ref|ZP_02328263.1| ribosomal protein L25 [Paenibacillus larvae subsp. larvae BRL-230010] # 1 201 1 198 199 234 54 9e-61 MGVALKGNTRTNATKSEAKQLRRQGKVPGVVYGKTTDSLTVVLERKELVPLLRSHPNAVI DLNIEGVGKRPVLISGVQRDSLSQDVIHIDFHQINMNEPVKATVAVEIVGEAAGVKEGGI LQVETAQLDVRCLPDDLPDSVQVDISNLGIGENILVSDLKLPENVEVKTEAEDVVVTVLQ PQKEVEETTADEPAAEAEAEETAESKE >gi|333608367|gb|AFDH01000019.1| GENE 31 24635 - 24835 280 66 aa, chain - ## HITS:1 COG:no KEGG:PPE_00038 NR:ns ## KEGG: PPE_00038 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 1 66 24 89 89 63 48.0 2e-09 MYDNGQQLYQDDHFQDHLEAEVPVQVYYLNAHKDIGFVYLYSSHFIKINNTFYNRGMFTF VSRPGY >gi|333608367|gb|AFDH01000019.1| GENE 32 25067 - 25636 516 189 aa, chain + ## HITS:1 COG:BS_spoVC KEGG:ns NR:ns ## COG: BS_spoVC COG0193 # Protein_GI_number: 16077121 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Peptidyl-tRNA hydrolase # Organism: Bacillus subtilis # 1 186 1 186 188 213 54.0 2e-55 MKCFVGLGNPGKQYEHTRHNIGFMAIDRFAEKWGVSSFQNKCKGHLAEVRVNGTKAYLLK PMTYMNLSGESIRAFMDFYKVDVSDLVILYDDMDTPFGNIRLRYQGSAGGHNGIKSVIAH TGTSTFNRIRMGINRPNPGYPIVDYVLSNFSKAETGALPAVLDKTCEAMEHCLSEPFEKT MAVFNGSGN >gi|333608367|gb|AFDH01000019.1| GENE 33 25851 - 26081 226 76 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_0038 NR:ns ## KEGG: Pjdr2_0038 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 1 76 1 76 76 115 67.0 6e-25 MSVKYICRHCQSSIGEISRDQVSEYQLGFHFLTPEERSDIIAYNMDGGVTVKVVCDYCKQ ALDANPELNLIGSPLQ >gi|333608367|gb|AFDH01000019.1| GENE 34 26209 - 29730 3259 1173 aa, chain + ## HITS:1 COG:BS_mfd KEGG:ns NR:ns ## COG: BS_mfd COG1197 # Protein_GI_number: 16077123 # Func_class: L Replication, recombination and repair; K Transcription # Function: Transcription-repair coupling factor (superfamily II helicase) # Organism: Bacillus subtilis # 5 1146 4 1154 1177 1290 58.0 0 MQALIQAFSTDRDFQSVITGIRSGMKEQLIAGLTGSSRQVMLAALMQQLERPLLIVTHNM FSAQKIFEDLSECLPEDGVLLYPAQELLAAEAAIASPEMLAQRIDVLTKLAGGYRGAVIV PYAGFRRLLPTKETFKEAQLTVRLGDTIDLEEFLTRLTELGYERVERVEAKGEMSVRGGI VDLFPLTSSTAVRIELFDVDVDSIRTFDVSDQRSIEKLDSFVIQPCREVLLNRKRFQGAA QHAYELLQTQLAKMTDRQAKDRLLEGIGHDIELLREGNTFQGLFKYVSLLYPERQTLSDY MPEDTVLLVDEPARLVETSKQLEREEAEWVTSSLQDGKALPALTLSKQLETLMQRRTYPT LYMSLFLRQVPQTQPQNIVNFMSRVMQNFHGQMNLLKAEMERWKKTGSRVIILANGEERM DRVRRVLGDYQIDEPEIMNGNLQTGFELPSIHLVVITEGEMFTQKQRKARKVDKKIENAE RIKSYQELKVGDYVVHVNHGIGKYVGIGTLEVGGIHKDYLHIVYAGGDKLSVPIDQIDLI QKYVGSEEKEPKIYKLGGADWNRVKNKVRTSVKDIADDLIKLYADRQATTGYGFSSDSAY QQEFESMFPYDETTDQLRAIGEIKKDMEKPRPMDRLLCGDVGYGKTEVAIRAAFKAAIDG KQVAVLVPTTILAQQHYETFRERFSGYPFNIQVLSRFRSKKEQNETTKGVKAGTVDIVIG THRLLSQDLKFKDLGLLIVDEEQRFGVSHKEKLKRLKTNVDVLTLTATPIPRTLHMSMLG VRDLSVIETPPENRFPVQTYVLEYSTTLVREAIERELAREGQVYFLFNRVQGINQMAEQI SMLVPEARVTVAHGQMSEQELEKTILDFLDGEFDVLVSTSIIETGVDIPNVNTLIVHDAD KMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLNEVAEKRLQAIKEFTELGSGFKIAMRD LSIRGAGNLLGAEQHGFIASVGFDLYSQMLSEEIAKRKLELDGEQAEPEKEWITQLDLHL DAYLPSDYIYDSMQKIEIYKKVANIRSFAEAEDLDEELVDRFGDLPPAVSNLLAVARLKV YGAEYKIESISQKGDDYQIKISPDETERLDGQKLFTISNGFDGRVKLIAGPQIHVHIRGK GLSPEDTIALVERFLLQYREALKTKGELQNATQ >gi|333608367|gb|AFDH01000019.1| GENE 35 29717 - 30877 1278 386 aa, chain + ## HITS:1 COG:BS_prsA KEGG:ns NR:ns ## COG: BS_prsA COG0760 # Protein_GI_number: 16078059 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Parvulin-like peptidyl-prolyl isomerase # Organism: Bacillus subtilis # 84 310 52 247 292 71 32.0 3e-12 MQHNKSGWAKSKWLLLAVLVLVLAVASGCGKKDEGKAGTPEEVIATYKDGGKVTRGEFDK LLSFNRLLYPEYAQFETDPAYQQSMLEQYIMLKVLSGRASDDVKKEADKQVTEQVTQLKT FVGAQEGGLEKKLKDAKLEEKDIEDLLRLSVYSTSHLEKQVTDDEIKAEYEKAKKADPNA YDVATVRHILIGLNDPATNKELRTKEEALKRAKEVQQKLKNGGDFDALAKEYSDDPGSKD KGGKYENAKVSQWVAGFKKAALELPLNTISDPVETDYGYHVMKVESRKTETVEDAKKELA SNLAQVKMQEFVTKELPGLIETNKLPKPTPTPAPSANPSPAPGASTEPSGTPAPTGSPSP QTTPTAAPTDVPGATPPAASPSPAAK >gi|333608367|gb|AFDH01000019.1| GENE 36 31110 - 31652 562 180 aa, chain + ## HITS:1 COG:BH0070 KEGG:ns NR:ns ## COG: BH0070 COG2002 # Protein_GI_number: 15612633 # Func_class: K Transcription # Function: Regulators of stationary/sporulation gene expression # Organism: Bacillus halodurans # 1 180 1 179 179 231 67.0 4e-61 MKATGIVRRIDDLGRVVIPKEIRRTLRIREGDPLEIFVDRDGEVILKKYSPIGELGDFAK EYAESLYESTNHITLITDRDTVIAVAGGSKKEYMDKQIGQIVETTMENRKPTIESGSGTY EISKDNPETYSSFVIAPIVAGGDPIGSVILMSKDEEVKMGNMESKMVETAAGFLAKQMEQ >gi|333608367|gb|AFDH01000019.1| GENE 37 31730 - 32353 543 207 aa, chain + ## HITS:1 COG:BH0070 KEGG:ns NR:ns ## COG: BH0070 COG2002 # Protein_GI_number: 15612633 # Func_class: K Transcription # Function: Regulators of stationary/sporulation gene expression # Organism: Bacillus halodurans # 28 206 1 178 179 212 60.0 5e-55 MGRVLFNPYFFKHPSVNPQKESEALSSMKATGIVRRIDDLGRVVIPKEIRRTMRIREGDP MEIFVNPDGEVILQKYSPVGELGDFALEYAESLNESTGYQAVISDRETFIAAAGRGRKEY DGRPVGEQVESAMNGRQTIVQATAGSYVLVKDAADAYGSFVIAPIIHNGDAIGAVLLVSK ENDVVMGKTERIMAETAASFLSKQMEV >gi|333608367|gb|AFDH01000019.1| GENE 38 32398 - 34197 1647 599 aa, chain + ## HITS:1 COG:BS_yabM KEGG:ns NR:ns ## COG: BS_yabM COG2244 # Protein_GI_number: 16077125 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Bacillus subtilis # 9 589 2 526 532 228 31.0 2e-59 MSTEKGTQEQTVTVGSSRLLKGAALLAAAAVFSKLLGTLQKIPLQNIAGDGAFGIYNAVY PLYLLILFLATAGFPITVAKFVQDRAAARDHAGARRVAAASALLLTGTGVFCFLLLYFGA DALAGWIGTAAAAPAIRSISYALLLVPVLSVLRGYFQGYQNMVPTAVSQVVEQTVRVLTM VLLLLYLTEQGAGDGDIAAGATFGSVTGAAGALLLLLFYWQRSKERRAGNPAELTSAETA DHSDSCEAPHSVGKRLERAADEKPATMGEAAQAEATGPVGTKEPLGRLMASIGAYALPIC LGSIMTPILNLIDAFTIPRLLLGGGADPAEAMRQFGLYNHGLPLVQAVTMVASSLTAVLV PAIAAAAAADPAQLQARTERTVRMTGLLGLAAAAGLASLTVPVNVMLYQSDEASGTMALL ALTALFGTLNIVLAGVLQGLGAVNAPALHLLAAAAVKIGGSLLLVPRWGIAGAAVSAVLA FAAASALGLAEVRRLTGAPQRWRASALAPLAAAALMCAALGALQLAGGPLFGAVAPGLGS RGQAVVLALAGVALGAAVYAIALLRFGAVNRAELEQLPGGGKLASALTKLRLLPQGERL >gi|333608367|gb|AFDH01000019.1| GENE 39 34305 - 35786 1626 493 aa, chain + ## HITS:1 COG:BH0072 KEGG:ns NR:ns ## COG: BH0072 COG3956 # Protein_GI_number: 15612635 # Func_class: R General function prediction only # Function: Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain # Organism: Bacillus halodurans # 1 492 1 488 491 424 49.0 1e-118 MTQGITVLGLGSGDENQLTLGVLRRLQQAPKLILRTDHHPVAAYLRAEGIRYETFDAIYE AKDRFDDTYEAIAASLLESARREAVVYAVPGHPMVAEYTVQLLRAKCPDAGIPLEIVGGE SFLDQAFLRFGFDPIEGMQLLDATDLRPGMLNPRLHTVIGQVYDTFTASDVKLTLMELYP DDYTVFAGHSLGVAGEEWVVRVPLYELDRIEGYGNLSLVWVPRSDRDELRNRTLERLHEI VAILRSPEGCPWDREQTHASLRKNLIEEAYEVLETIDEDDPDHMCEELGDLLLQVMLHSQ MEEETGAFTVYDVIAGLNEKLIRRHPHVFGTEGAENAEEALANWQQMKDEEKRRKGIDPS KQSALAGVPKDLPALMKALKLQKKAAVVGFDWSEVGEVIGKITEELGEVQEAMENGAAAE RLDELGDLLFAVVNLSRFLKIDPEEALASTNRKFVRRFQYIEERLEARGKSLAEADLAEM EELWQEAKKLQST >gi|333608367|gb|AFDH01000019.1| GENE 40 35901 - 36173 187 90 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148826039|ref|YP_001290792.1| 50S ribosomal protein L35 [Haemophilus influenzae PittEE] # 1 90 4 93 96 76 42 3e-13 MNKTDLINNISTKSGLTKKDVETVLNSFLGEITDALSTGDKVQLIGFGTFETRKRSGRTG RNPQTGQEISIPESNVPAFKAGNKLKEAVK >gi|333608367|gb|AFDH01000019.1| GENE 41 36173 - 36433 282 86 aa, chain + ## HITS:1 COG:BS_yabO KEGG:ns NR:ns ## COG: BS_yabO COG1188 # Protein_GI_number: 16077127 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) # Organism: Bacillus subtilis # 1 82 1 82 86 97 69.0 4e-21 MRLDKFLKVSRLIKRRTVAKDVSDQGRVWINGRDAKPSSTLKVGDELTIQFGQKKVTVRV EQLTESTRKEDAAHMYTLLREEANNG >gi|333608367|gb|AFDH01000019.1| GENE 42 36555 - 36836 385 93 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_0053 NR:ns ## KEGG: Pjdr2_0053 # Name: not_defined # Def: sporulation protein YabP # Organism: Paenibacillus # Pathway: not_defined # 1 93 1 94 94 120 74.0 2e-26 MMEAGKTKRQEVKMLNRKLLEISGVKNVESFDSEEFLLETDCGFLLIKGQNLHIKNLSLE QGLVAIEGYVNALSYVDANSPEKNKGFLGKLFK >gi|333608367|gb|AFDH01000019.1| GENE 43 36869 - 37414 406 181 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_0054 NR:ns ## KEGG: Pjdr2_0054 # Name: not_defined # Def: spore cortex biosynthesis protein YabQ # Organism: Paenibacillus # Pathway: not_defined # 1 178 14 199 201 115 44.0 8e-25 MFVSGMGLGMLYDAFRVVFVQLRLPRWTFPLADVVYWITATVCVFGTLVHSNQGQVRFFV FVGLIIGLLVYMMTLSRTVRKVIAVLIRAVKWLLRFFRRMFTLLFIKPAIGLYKLAWVLL GFLAALAMFLFRVVVQLVYPMWKLLLWLTRPLYKHLRVPARVLRWVNFLKQLFQKWFRKG K >gi|333608367|gb|AFDH01000019.1| GENE 44 37470 - 37811 223 113 aa, chain + ## HITS:1 COG:no KEGG:BBR47_01150 NR:ns ## KEGG: BBR47_01150 # Name: divIC # Def: cell division protein # Organism: B.brevis # Pathway: not_defined # 15 106 10 101 102 68 36.0 6e-11 MPVPPKSTQTQPKSNSKGTRRRFRIAAVILLGFLTWAGVTFWGQHGKISEKRAEMQQIKQ ELTDEQKRKADLQQEIARLHDPEYLEQVIRSELNYAREGETRFFIPTSKSQNP >gi|333608367|gb|AFDH01000019.1| GENE 45 37918 - 38400 379 160 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|218290661|ref|ZP_03494752.1| RNA binding S1 domain protein [Alicyclobacillus acidocaldarius LAA1] # 1 159 1 133 134 150 54 2e-35 MAIEVGSKLEGRVTGITHFGAFVELEQGVTGLVHISEIADNYVKDVNDHLKLEDKVLVKV INVDKDGKIGLSIKQTIEKPAEPARPERQGNGKFDSPRSGDRGGFGNRGDRGGRGGGFRN APGKLSFEDKMNRFLKDSEERISSLKKQDSKRGGRGGRRD >gi|333608367|gb|AFDH01000019.1| GENE 46 38732 - 41224 2225 830 aa, chain + ## HITS:1 COG:BH0078 KEGG:ns NR:ns ## COG: BH0078 COG2208 # Protein_GI_number: 15612641 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Serine phosphatase RsbU, regulator of sigma subunit # Organism: Bacillus halodurans # 37 827 38 828 830 722 47.0 0 MEKRNGALSIGLQWAGAVQRTKSAAQGRVAENRLIQSFVAKKWSILLLLMAFLLGRAMIL EELAPFSIAFFAVMYFQRRDLLLWTGVFLFAGSLLAVQPQSGFILTEMIVFLLIQKGLEK YERSDISLAPVLVFITTLLVQMFAHLVSSDLSWYSLTMTGVESVLSLVLTLIFVQAVPVF TLTRKNYQLKHEEIICLIILLASMMTGTVGWTLGPVTVEHVVSRYLILLFALVGGAPFGA SVGVVTGLILSLANTNAIYQMSLLAFSGMLAGLLKEGRRMAVAFGMLLGSSILSIYIGTQ GEVMNSTWESVAAVALFLLTPKSVLQTLAKYVPGTQENLKSQQDYAKRVRDITAGRVEQF SQVFMQLARSFKQLTVESQPVPKEEEISHFMEAVSCQTCQMCPKRVRCWDQRFYQTYQFM TSMMTEIELNPNFSRKQIPIDWRQACTKPDQVLDVMKNQYAKYQNDMHWKKQISDSRQIV ADQLSGVSQVMEDLAKEIKREGQELFLQEEQIRQALEDLGLSIHSIDVISLDEGNVEIEI IHQYTKGFDECRKIIAPLLSEILGEHIAVKNEEMLPRGEGYSTVLFGSAKEFEVETGIAG AAKGGELLSGDSFSVAELGNGKFVVALSDGMGNGERARAESSAALTILQQLLQSGMDEKI AIKSVNSVLLLRSSDEVYATVDMALIDLYSAETTFMKIGSTPSFIKRGSEVIPVMANNLP VGILQDIEVDLLSRSLQHGDLLIMMTDGIYDAPGHAVNKEIWMKRVIQEIDTDIPQDFAD RLLDRVMRCHHGEIIDDMTVVAARVEKHQPEWATFRWPGVNRIERPKVVS >gi|333608367|gb|AFDH01000019.1| GENE 47 41453 - 42187 632 244 aa, chain + ## HITS:1 COG:BS_yabS KEGG:ns NR:ns ## COG: BS_yabS COG2304 # Protein_GI_number: 16077133 # Func_class: R General function prediction only # Function: Uncharacterized protein containing a von Willebrand factor type A (vWA) domain # Organism: Bacillus subtilis # 1 235 1 237 245 186 45.0 4e-47 MEAEEMKQILLITDGCSNVGISPAAAAAEARAEGITVNVIGVVDQGELGLLGAEEIREIA KAGGGMSRIATPQQLSQTVQMMTRKTVTQTVQQAVSRELQSILGSGDMTELPPAQRSEVV RVIDELAESGSLRVALLVDASASMKPKMAAVREAISDLLLSLKARSGTSELSVFHFPGRH DGDPDVEMDSGWTSNLANLDKMFYKLNMKGTTPTGPAMLKVAAYVSGKPIYSDDEDGMLR DYVV >gi|333608367|gb|AFDH01000019.1| GENE 48 42171 - 43091 810 306 aa, chain + ## HITS:1 COG:BH0080 KEGG:ns NR:ns ## COG: BH0080 COG0515 # Protein_GI_number: 15612643 # Func_class: R General function prediction only; T Signal transduction mechanisms; K Transcription; L Replication, recombination and repair # Function: Serine/threonine protein kinase # Organism: Bacillus halodurans # 9 258 14 259 327 144 31.0 2e-34 MTTSYEPALPLGTTLKGIWNGRTYTVVRGLGSGANGQVLLVRRGERRYAMKIGYDPLDHQ FEVNALQSLSKTDTSFSRFLLDADDAEFEGRRLSFFIMPYIQGLSLSKYIRTYGKDWIYV IGSNLLKKLTELHRSGFIYGDLKSDNLVLTEHGSVELIDFGGMTAKGRAVKQFTEIFDRG YWCAGERVAEESYDLFSFAVLIIKTLDERDAFRPALQELPQNRNISMLEDIVKSSERMKG LAPFLLKALNNRFASSEEALAVWREQAKKARGIKVPAERKEAPGIVLFLTISLIVLLGTI VYFYLD >gi|333608367|gb|AFDH01000019.1| GENE 49 43176 - 44693 506 505 aa, chain + ## HITS:1 COG:BS_yacA KEGG:ns NR:ns ## COG: BS_yacA COG0037 # Protein_GI_number: 16077135 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Predicted ATPase of the PP-loop superfamily implicated in cell cycle control # Organism: Bacillus subtilis # 29 476 3 443 472 261 34.0 3e-69 MEGKRQPREANHREPGSKGLDPGFRVRAAVESRIAEEKLLEAGDTVVVAVSGGPDSVALL HLLDGLSGSRNWRLIVAHVNHRFRGEESDREAAFVASFAERLGLPCESAFIDVPAYIEET ALNSQVAARRKRYEFLFETARKYGASKIALAHHADDQAETILMRILRGTGPGGLTGIPER RAEKKVELVRPMLRIYKKEVISYCDFLGLAYCRDSSNDSRKYFRNRIRLDAMPYLRQYND QLPESLNRLGEIMTAENDYMEHEADSVYASVVKDEAGAASLDRGDFVHLHVALQRRVIKL ILNYLAFQEENVDYARLEAIRTAIVQDSPSNLTWPIDGRIALIREYERICFRSETSARSG DAAFLHQVDLQQPFLPIPEAGMTFGFTAEERDGVGGADIPAPCPDEAWFDLDALRMPLSV RNRQAGDRLDVFGLNGTKKVKDILMDAKIPPSRRDRLPLLMDAEGRVLWIPGVRRSRHAL VGPGTVRWLHIRIEPPVTEGNGLGE >gi|333608367|gb|AFDH01000019.1| GENE 50 44734 - 45273 581 179 aa, chain + ## HITS:1 COG:BH0084 KEGG:ns NR:ns ## COG: BH0084 COG0634 # Protein_GI_number: 15612647 # Func_class: F Nucleotide transport and metabolism # Function: Hypoxanthine-guanine phosphoribosyltransferase # Organism: Bacillus halodurans # 1 179 1 179 179 234 67.0 5e-62 MFNDIQEVFYSEEQIQAKVQELGAQISKDFEGRNPLVICVLKGAFIFMADLVKQVTIPLE LDFMAVSSYGQSTKSSGVVKIIKDLDVSVEGRHVLIVEDIIDSGLTLSYLIDVLERRNAQ SVSVVTLFNKPARRSVDLQPDYAGFEIPDAFIVGYGLDYAEKYRNLPYIGVLKPEIYSS >gi|333608367|gb|AFDH01000019.1| GENE 51 45369 - 47345 1403 658 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 [Rickettsia canadensis str. McKiel] # 35 639 37 635 636 545 49 1e-154 MNRFIRNTGFYLLIFLVTVGIVHFISTQNDQKEAITYNQFRQELTSKNVEKLQIKVDGGT YLINGQYKNPKAADKSTFVTRGPFDSRVVELIETAGVQEEYLKMEGDSVWISFLTSIIPF VIIFVLFFFLMNQAQGGGGKVMNFGKSRARLYNEEKKRVTFEDVAGADEEKQELVEVVEF LKDPRKFSAVGARIPKGVLLNGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGA SRVRDLFENAKKNAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGANEG IIIVAATNRPDILDPALLRPGRFDRQITVDRPDVKGREAVLKVHARNKPLAKDVRLDSIA RYTTGFTGADLENLLNEAALIAARRNRKDISMAEIEEAFDRVIVGTQKKSRVISEREKRT VAYHESGHAIIGYYAENADMVHKVTIVPRGRAGGYVMMLPKEGEDRMMQTKNELLDKVTG LLGGRVAEEIFIGEIATGAYSDFQKATGIVRKMVMEFGMSDKLGPMQFGSSQGQVFLGRD IGHEQNYSDAIAYEIDQEMQLIIRECYDRAKQILNTHKDKVHLVAQTLLERETLDKEQIV ELLEKGQISGNEDIKVTIQGQDDSVKPEPAPEIELKTETPERTKLNPDKPDDEGNNQA >gi|333608367|gb|AFDH01000019.1| GENE 52 47560 - 48498 645 312 aa, chain + ## HITS:1 COG:MA0959 KEGG:ns NR:ns ## COG: MA0959 COG0379 # Protein_GI_number: 20089837 # Func_class: H Coenzyme transport and metabolism # Function: Quinolinate synthase # Organism: Methanosarcina acetivorans str.C2A # 12 312 2 302 304 326 53.0 4e-89 MEALALERKAEQNRLLKERILELKKERNAIILAHYYQRDEIQEVADFRGDSFLLAQKAAE TDADVIVFCGVHFMGESAKILAPTKTVIIPDERAGCPMADMVNVEGLRALKKEHPNAKVV AYINTSAEVKSETDICCTSANARKVIESIDAEEIIWVPDKNLGDYVSKFTNKKMIIWEGY CNTHDMLTVKDVEEMKAAHPNAQFVVHPECRPEVVKLGDFVGSTTAIIKYCRESDCQEFI VGTEDGTGYQLRLDSPNKTFHFATKYLVCPNMKVNNLKKVVRCLETMQPEIYVAPEVAEK AKLSLERMLQVK >gi|333608367|gb|AFDH01000019.1| GENE 53 48539 - 50170 929 543 aa, chain + ## HITS:1 COG:nadB KEGG:ns NR:ns ## COG: nadB COG0029 # Protein_GI_number: 16130499 # Func_class: H Coenzyme transport and metabolism # Function: Aspartate oxidase # Organism: Escherichia coli K12 # 11 513 1 521 540 386 41.0 1e-107 MIPRYLTDTDLTAIPHYKTDVIIIGAGIAGLFTALQASASQRVLLITKKSLLDSNTRYAQ GGIAAVISDEDSPEYHLQDTLVAGAGLCSRDAVDVLVHEGPQGVQDLIRMGTQFDLEDGE IALTKEGAHSQRRILHANGDATGAEIVRALSENTKNNPSIEIWDDHIVIDLITVDGECCG ALVQKPDGQRVYVQGNATVLCTGGAGQLFRYTTNPDVATGDGVAIAYRAGADIRDMEFIQ FHPTVLVYPGAPRFLISEAVRGEGAYLRNIKGERFMEKYHPQLELAPRDVVARAIVSEIE ETGSSFIYLDITHEPEQMIRHRFPTIYETCLSFGLDLTSDWIPVAPAAHYMMGGVKTDLH GETNIKRLFACGEVSSTGVHGANRLASNSLSEAIVFGRRIIDRIRSLAPLLNQVPQTGEE TAARTELPKQAMVEKKLKLQKVMVRYAGVRRDAAGLQRGLDELKRHLPSFDSCLTRREDY EFANLLTCALLTAEAALLREESRGGHYREDFPQRRDEQWLKHIVLNRECGLTEEWILNDG IKL >gi|333608367|gb|AFDH01000019.1| GENE 54 50154 - 51020 529 288 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163755345|ref|ZP_02162465.1| 30S ribosomal protein S6 [Kordia algicida OT-1] # 6 278 9 282 286 208 42 7e-53 MELNFKQIRQNIKLWLDEDIGTGDVTTMYTIPADQQSKGIIHLKESGIVAGLRVAQEVFA EVDENLVFSPQVKEGEFVSKGTVIAIVTGNTRSILKGERLALNLLQRMSGIATRTRQYVN ALEGLPTRLVDTRKTTPGHRMLEKYAVRVGGGFNHRYGLYDAVMIKDNHIKGAGSITAAV RAARSRIPHTMKIEVEVENFEQLDEAIAVGADIIMLDNMKAADMAKAVSIVKSQAPHVLV EGSGSVTLETIKSLAETGVHVISVGRLTYSVSALDISLDLNEQKGVSL >gi|333608367|gb|AFDH01000019.1| GENE 55 51017 - 51790 794 257 aa, chain + ## HITS:1 COG:BH0086 KEGG:ns NR:ns ## COG: BH0086 COG1521 # Protein_GI_number: 15612649 # Func_class: K Transcription # Function: Putative transcriptional regulator, homolog of Bvg accessory factor # Organism: Bacillus halodurans # 1 253 1 253 254 338 66.0 4e-93 MILVVDVGNTNIVLGIYQGTELLHHWRLGTNRSATVDEYGMMFHNLFQYAGIDIQQIEGV IISSVVPPLMFALEHLCLKYVKRTPLIVGPGIKTGLNIRVDNPKEVGADRIVNAVAALEL YGSPCIIVDFGTATTYDYIDKAGQLIGCAIAPGIGISTEALYQRAAKLPRIELIKPKSVI GRNTISSMQAGIIFGYVGQVDGIVDRVKQEFGIAPKVIATGGHAELIASESRTIDVVDPM LTLEGLRFIYTKNAKQE >gi|333608367|gb|AFDH01000019.1| GENE 56 51814 - 52689 839 291 aa, chain + ## HITS:1 COG:BS_yacC KEGG:ns NR:ns ## COG: BS_yacC COG1281 # Protein_GI_number: 16077139 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Disulfide bond chaperones of the HSP33 family # Organism: Bacillus subtilis # 3 291 2 291 291 323 55.0 2e-88 MSDYLIRGTALEGRVRAFAVLTTSITEELRQRHHTTPTATAALGRTAAAGLMMGAMLKGE EKLTLQVKGGGPIGSIVVDANSKGEVRGYVDDPNVDLPLNAKGKLDVAGAVGTDGFLYVT KDLGLKENYRGSIPIVSGELAEDFTYYFAKSEQTPSAVALGVLVDVDRTVKVSGGFIIQL LPGLTDDEITEIEKTLAQIPPITTLLDRGASLEEVLKEVLPSVEIMERSAVSFQCKCSRE RVEQTIISLGRDELQSLIDEDGRAEVVCHFCNEAYQFEREELQTMLDSINK >gi|333608367|gb|AFDH01000019.1| GENE 57 52708 - 53658 725 316 aa, chain + ## HITS:1 COG:BS_yacD KEGG:ns NR:ns ## COG: BS_yacD COG0760 # Protein_GI_number: 16077140 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Parvulin-like peptidyl-prolyl isomerase # Organism: Bacillus subtilis # 6 288 9 271 297 90 24.0 4e-18 MHNVKVLWGAILALSIGVIVLLSLQLSETGLGKKSAAGGRSGDIPADGHIVARITGREFT QGELTEKLTKHYGAEMLNQMLDRETLRLEAQEQGVDINEAEISRELKRMQQGYENEQNFY DSMKEQLGMSKEDVREDVLYKLLLEKLATHDVEIADDRITKYIQGHPEEFKQAAQIHLHK MVVSALDQAKKATAAYQGGESFATLARDRSLDDSGSQGGDLGWMEEDDPFQPAEIMKAAR KLGVGQLSAPIKTAGGYALILITEKKMNTGPDEAAIRESVRKQLALQEAPPLNEYLLSLR QKWKATIADPGLNPNS >gi|333608367|gb|AFDH01000019.1| GENE 58 53771 - 54709 963 312 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148988856|ref|ZP_01820271.1| 50S ribosomal protein L9 [Streptococcus pneumoniae SP6-BS73] # 4 311 3 307 308 375 60 1e-103 MAKLVESITQLIGNTPLVKLNRVVPEDSAEIYVKLEFQNPGASVKDRIAISMIETAEQEG KLKPGDTIVEPTSGNTGIGLAMVAAAKGYRAILVMPETMSMERRNLLRAYGAELVLTPGA EGMKGAIRKAEELQAENPGYFIPQQFKNQANVKIHRETTGPEIVEAIKGHDGKLDAFIAG IGTGGTITGTGEVLRENFPGIKIVAVEPSASPVLSGGKPGPHKIQGIGAGFVPDILNTEI YDQIIPVDNEDAFETSRRVARQEGILGGISSGAAIFAALKIAKELGPGKRVIAVIPSNGE RYLSTPLYQFDE >gi|333608367|gb|AFDH01000019.1| GENE 59 55004 - 56602 1015 532 aa, chain + ## HITS:1 COG:BH0090 KEGG:ns NR:ns ## COG: BH0090 COG0147 # Protein_GI_number: 15612653 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Anthranilate/para-aminobenzoate synthases component I # Organism: Bacillus halodurans # 54 516 46 472 486 459 52.0 1e-129 MSATTITLTTLADWTEWAQAGAYTSVPYITSIPWTEEISTWEHAWRTAGTHAFVLESGRG GRYTFLGLHPVAAICGSAASAEAAERDGAVPNGWRSVPMQGAPLDTVKRWMAPWRSPDVA GAPKFTGGCVGFWSYDVVRSMEKLPELAEDDLPLPEYSFARYDEVWVFDREEGRLYAAVH TPLPAEPSASDLSRLYQAAVRRSESMLRLWRGLAGYAEAGAKRLQREAEWQALVSAGEDT TLEAEAAEGASRAFPRESFIRAVERIQAYIGQGDVFQVNLSVRQSRPLQTSPEQIYEALR IVNPSPYMGLMRFPGFALVSGSPELLVQLEGRHLRTRPIAGTRPRGRTPEEDARLADELL SNEKERAEHVMLVDLERNDLGRIARYGSVKVDEFFVIERYSHVMHLVSEVTGELREGLDA FDVIAAAFPGGTITGAPKIRTMEIIEELEPVRRGPYTGSMGWIDYNGNMEFNILIRTLVA AGGSGYIQAGAGIVIDSVPDREYEEALNKARALWKAIQFSEHSMSRAGTEVL >gi|333608367|gb|AFDH01000019.1| GENE 60 56626 - 57213 679 195 aa, chain + ## HITS:1 COG:BH0091 KEGG:ns NR:ns ## COG: BH0091 COG0512 # Protein_GI_number: 15612654 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Anthranilate/para-aminobenzoate synthases component II # Organism: Bacillus halodurans # 1 185 1 185 198 293 71.0 1e-79 MILVIDNYDSFTYNLVQYLGELGQEIVVKRNDAIDLSGIEELSPDHILISPGPCTPNEAG ISLGVIRHFKGRIPILGVCLGHQAIGQAFGGDVVRAGKLMHGKTSPIHHDGKTIFEGIPS PYTATRYHSLIVRKETLPDCLEISATSDEGEIMGLRHKEYPIEGVQFHPESIITDHGLTL LRNFLGSTVPAGSGA >gi|333608367|gb|AFDH01000019.1| GENE 61 57226 - 58092 443 288 aa, chain + ## HITS:1 COG:BH0092 KEGG:ns NR:ns ## COG: BH0092 COG0115 # Protein_GI_number: 15612655 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase # Organism: Bacillus halodurans # 1 255 5 251 295 236 47.0 3e-62 MNGNLVEEKEAVVSVYDHGFLYGMGLFETFRTYNGHPFLLREHMERIREGCAELGIPFQT DETGMRARVEELLQANGLEDAYFRYAVSAGVDMLGLPGGAFYENPSEIIYVKSLPQRNAD QPASRPLQLLNLRRNTPESGRRHKSFHYMNNILAKREMMNYPWAHGAEGLFLTDNGGYVA EGIVSNIFWIKGAVCFTPSLTTGILPGITRAFVLKLAEEEGLEISEGLFPWSELCEADEI FVTNSVQEIVSINELFDERGGSITVSRGTAGPVTSRLAQLYRECTRLL >gi|333608367|gb|AFDH01000019.1| GENE 62 58114 - 58944 753 276 aa, chain + ## HITS:1 COG:BH0093 KEGG:ns NR:ns ## COG: BH0093 COG0294 # Protein_GI_number: 15612656 # Func_class: H Coenzyme transport and metabolism # Function: Dihydropteroate synthase and related enzymes # Organism: Bacillus halodurans # 12 270 14 272 280 322 63.0 4e-88 MIRTLAAGETNFELGRRTLIMGILNVTPDSFSDGGSYTTVEHAIQHALSMVEEGADMIDI GGESTRPGHAPVSLQEELERVVPVIRELVRHVQVPISVDTYKAEVARQAIEAGAHIINDV WGFKADPDMAGVAAQAGCPIILMHNRPEAVYTDFLPEVLEDLQESIDLALGGGVKKTNII LDPGIGFAKSYEQNLWLMNRLEAIVELGYPVLLGTSRKSMIRTTLGLPPDDVIEGTAATT ALGIAQGCDIIRVHDVQAMKRVAVMTDAIVRGPGSM >gi|333608367|gb|AFDH01000019.1| GENE 63 59034 - 59402 144 122 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148994682|ref|ZP_01823786.1| 50S ribosomal protein L13 [Streptococcus pneumoniae SP9-BS68] # 1 122 1 122 278 60 26 1e-34 MDKLILTRMEFYGYHGVFAEENKLGQRFYVDVELHMPLDKPGRTDNIEDSINYAEAYAVI KEVVEKRTFKLIEALAEQVASSLLETYTSIEEVTVRVIKPHPPFDIHFAGVTVEISRKRA QS >gi|333608367|gb|AFDH01000019.1| GENE 64 59399 - 59935 307 178 aa, chain + ## HITS:1 COG:BH0095 KEGG:ns NR:ns ## COG: BH0095 COG0801 # Protein_GI_number: 15612658 # Func_class: H Coenzyme transport and metabolism # Function: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase # Organism: Bacillus halodurans # 10 178 6 174 174 181 55.0 8e-46 MSPADITTAYIALGSNIGDRERYLAEALKKLDEYPHVQVLACSAIYETDPVGYVDQDAFL NMAAAVHTSLSPEELLAVMQNIEQVLGRVRDIRFGPRTIDLDLLLYGEREIRTPDLIVPH PRMQERAFVLVPLADLFSHIPNTSFASIEKQLAKLDGKEGVMLWKKMQWPSEFGHSAS >gi|333608367|gb|AFDH01000019.1| GENE 65 59887 - 60099 175 70 aa, chain + ## HITS:1 COG:BH0096 KEGG:ns NR:ns ## COG: BH0096 COG1396 # Protein_GI_number: 15612659 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus halodurans # 1 70 1 70 73 72 52.0 2e-13 MEKNAVAQRIRAFRKLKGYTQNQLAELLGVSIAVLGSIERGTRKPDTRMIQKISNALGIE PEELLPPSGK >gi|333608367|gb|AFDH01000019.1| GENE 66 60096 - 61121 543 341 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|42631300|ref|ZP_00156838.1| COG0042: tRNA-dihydrouridine synthase [Haemophilus influenzae R2866] # 1 311 22 326 353 213 37 2e-54 IGGEHMLKIGDVVAPNNVVLAPMAGVCNPAFRLIAREFGCGLVCAEMVSDKAIVHGNSRT MEMLYVDEREKPLSLQIFGGDTETLVQAAKYVDANTNADIIDINMGCPVPKITKCDAGAR WLLDPSRIEEMVRTVVGSVNKPVTVKMRIGWDSEHIYAIENAKAVERGGGSAVSVHGRTR EQLYTGKADWNIIRDVKQSVSIPVIGNGDVVTPEDAKRMIDETGVDGVMIGRGALGNPWM LYRTVQYLTKGELPPEPEAEEKMRIATLHMDRLIKLKGENVAIKEMRKHMAWYLKGMKGA ARLKDAIMEQTTRDGMVRILDEYASSFDNMSDNQEEQPALH >gi|333608367|gb|AFDH01000019.1| GENE 67 61269 - 61745 722 158 aa, chain + ## HITS:1 COG:CAC3198 KEGG:ns NR:ns ## COG: CAC3198 COG0782 # Protein_GI_number: 15896445 # Func_class: K Transcription # Function: Transcription elongation factor # Organism: Clostridium acetobutylicum # 3 157 4 158 158 150 54.0 1e-36 MSEKEVLLTQEGLKKLEEELEHLKSVKRREVAERIKVAIGYGDISENSEYEDAKNEQAFI EGRVITLEKMLRNARIVNLDEVDINTVNVGSIVTLKDLEFGDLVEYTIVGTAESDPFLNK ISNESPVGKAILGKQKGAKVDVTVPAGVIQYEIMDIKK >gi|333608367|gb|AFDH01000019.1| GENE 68 61950 - 63449 1473 499 aa, chain + ## HITS:1 COG:BS_lysS KEGG:ns NR:ns ## COG: BS_lysS COG1190 # Protein_GI_number: 16077150 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Lysyl-tRNA synthetase (class II) # Organism: Bacillus subtilis # 1 495 1 499 499 724 72.0 0 MSQELELNELLQIRRDKLDELRGLGVDPFGDKYVRTHTAKQILDAYEETPKEELEQQTVE VSIAGRIMQKRAMGKASFAHLQDITGKIQIYVRQDALGDTKYNAFDLLDIGDMVGVKGTV FKTKTGETSIKVKELEVLTKSLLPLPEKYHGLKDVETRYRQRYVDLIMNQEVKETFILRS RIIQSMRRYLDGLGYLEVETPTLHAIAGGAAARPFITHHNALDMQLYMRIAIELHLKRLI VGGLEKVYEIGRVYRNEGISTRHNPEFTMIELYEAYADYKDIMALTENMVAHIAQEVLGT TTVQYQGHEVNLAPSWKRISMVDAIKEVVGVDFSVHMSNEEAQRLAKEHKVPVEPHMTFG HIVNQFFETFVEETLIQPTFIYGHPLEISPLAKKNPEDPRFTDRFELFIVAREHANAFTE LNDPIDQRQRFEAQLLEREHGNDEAHEMDDDFIRALEYGMPPTGGLGIGIDRLVMLLTNA PSIRDVLLFPHMREQRQGE Prediction of potential genes in microbial genomes Time: Sun Jul 17 07:52:02 2011 Seq name: gi|333608343|gb|AFDH01000020.1| Paenibacillus sp. HGF7 contig00035, whole genome shotgun sequence Length of sequence - 27008 bp Number of predicted genes - 23, with homology - 21 Number of transcription units - 13, operones - 6 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 23 - 670 362 ## + Term 716 - 758 8.1 2 2 Tu 1 . + CDS 886 - 1563 631 ## GYMC10_1556 hypothetical protein + Term 1609 - 1641 1.4 + Prom 1640 - 1699 8.1 3 3 Tu 1 . + CDS 1761 - 2183 458 ## COG1764 Predicted redox protein, regulator of disulfide bond formation + Term 2198 - 2237 6.6 + Prom 2352 - 2411 4.0 4 4 Op 1 14/0.000 + CDS 2463 - 2966 419 ## COG0817 Holliday junction resolvasome, endonuclease subunit 5 4 Op 2 29/0.000 + CDS 2963 - 3589 850 ## COG0632 Holliday junction resolvasome, DNA-binding subunit 6 4 Op 3 . + CDS 3608 - 4612 1041 ## COG2255 Holliday junction resolvasome, helicase subunit + Term 4759 - 4818 7.1 7 5 Tu 1 . - CDS 5023 - 9282 1275 ## GYMC10_1158 cell wall/surface repeat protein - Prom 9356 - 9415 4.8 + Prom 9206 - 9265 3.8 8 6 Tu 1 . + CDS 9405 - 9527 109 ## + Term 9574 - 9610 6.2 + Prom 9685 - 9744 4.8 9 7 Op 1 . + CDS 9798 - 11870 2007 ## COG2385 Sporulation protein and related proteins 10 7 Op 2 17/0.000 + CDS 11880 - 13001 1027 ## COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) 11 7 Op 3 15/0.000 + CDS 13022 - 14158 1004 ## COG0343 Queuine/archaeosine tRNA-ribosyltransferase 12 7 Op 4 . + CDS 14178 - 14498 450 ## COG1862 Preprotein translocase subunit YajC + Term 14520 - 14570 1.1 - Term 14501 - 14565 18.2 13 8 Op 1 . - CDS 14588 - 15433 631 ## COG0671 Membrane-associated phospholipid phosphatase - Prom 15465 - 15524 1.8 14 8 Op 2 . - CDS 15527 - 15919 520 ## PPSC2_c4120 protein + Prom 15909 - 15968 5.7 15 9 Op 1 1/0.500 + CDS 16039 - 17358 832 ## COG1055 Na+/H+ antiporter NhaD and related arsenite permeases 16 9 Op 2 . + CDS 17442 - 18131 610 ## COG2323 Predicted membrane protein + Term 18143 - 18186 1.3 - Term 18124 - 18180 6.1 17 10 Tu 1 . - CDS 18196 - 19767 1748 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid - Prom 19880 - 19939 2.7 + Prom 19867 - 19926 2.7 18 11 Tu 1 . + CDS 19950 - 20651 601 ## Pjdr2_4390 hypothetical protein + Prom 20675 - 20734 7.5 19 12 Op 1 31/0.000 + CDS 20763 - 21995 1314 ## COG0342 Preprotein translocase subunit SecD 20 12 Op 2 1/0.500 + CDS 21985 - 22905 1010 ## COG0341 Preprotein translocase subunit SecF + Term 22913 - 22950 3.1 21 13 Op 1 . + CDS 22997 - 23950 838 ## COG0053 Predicted Co/Zn/Cd cation transporters 22 13 Op 2 7/0.000 + CDS 23994 - 26456 2108 ## COG0608 Single-stranded DNA-specific exonuclease 23 13 Op 3 . + CDS 26471 - 26986 722 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins Predicted protein(s) >gi|333608343|gb|AFDH01000020.1| GENE 1 23 - 670 362 215 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MPGGYEQGGVWPQGFAPQPYGPQAFTAGLASIPPMTGKKDCGCGCGGAKKGHGRAPEAAN FQTFPSGFAPYAGGAQQSPYTPFTSYGQPDWERICPPAFLAPYGYGTEQEGAVNPYAQFP QPAYAVSGPQDQETANRIEGLRESAQGTGENEARIHLVDEEEESGSFFEPEARAKKTSAP KKAKTSKSSARTVIRKAGRSAPKQAVSANVPWMNV >gi|333608343|gb|AFDH01000020.1| GENE 2 886 - 1563 631 225 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_1556 NR:ns ## KEGG: GYMC10_1556 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 65 224 77 236 237 156 44.0 5e-37 MVFNLLKQLKKKIRLKRKRLIFGSYVLLAAAAYLLIAYEFPKPAYREAGAPLGQAAAPEI DRVLKAQQEQTLRQIRSEGGQRLTYIQRSYVCGEEQQELGLKSAEEITALNGEHPDWIVS LNSGGSVIFTQHIDDLSPKCKQSAYFGVDESGNLSLFDGLPANDKVIRTFFQLNIQYLES TLPKETVHQLHEGIRVSDVAEFNSVLSTFSDYAVQESEKAMSPNY >gi|333608343|gb|AFDH01000020.1| GENE 3 1761 - 2183 458 140 aa, chain + ## HITS:1 COG:BS_yklA KEGG:ns NR:ns ## COG: BS_yklA COG1764 # Protein_GI_number: 16078379 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted redox protein, regulator of disulfide bond formation # Organism: Bacillus subtilis # 4 139 5 141 141 134 56.0 7e-32 MEHLYTAVATAQGGRNGKVTSDDGVLNLEVKMPKELGGPGGAATNPEQLFAAGYAACFDS ALNLVMRQKQIRSETQVTAHVTIGKDEADGGFKLAVELNVSIPGVEMGTANELVAAAHHV CPYSKATRDNIDVFIDVVQA >gi|333608343|gb|AFDH01000020.1| GENE 4 2463 - 2966 419 167 aa, chain + ## HITS:1 COG:FN0214 KEGG:ns NR:ns ## COG: FN0214 COG0817 # Protein_GI_number: 19703559 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, endonuclease subunit # Organism: Fusobacterium nucleatum # 1 154 1 154 190 162 53.0 2e-40 MRILGIDPGIAIVGFGFIDKTGSKLTPVQYGCIQTEAHTDPGLRLKQVYDAACQLIDKYK PDAMAVEKLFFNRNVTTAFTVGQARGVIILAAVQRGIPVGEYTPLQVKQAVVGYGKAEKI QVQEMVRMFLKLSAIPKPDDVADALAVAICHAHSSTLHDKIKEVTKR >gi|333608343|gb|AFDH01000020.1| GENE 5 2963 - 3589 850 208 aa, chain + ## HITS:1 COG:BH1224 KEGG:ns NR:ns ## COG: BH1224 COG0632 # Protein_GI_number: 15613787 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, DNA-binding subunit # Organism: Bacillus halodurans # 1 206 1 201 203 157 43.0 1e-38 MIDFLRGKLAARETEYVVLDVNGVGYRVFCANPYAFGLKEDADVTLYTHYHVREDAHLLF GFPTREEQMLFRQLIDVSGIGPKVALGILAGGRPETVVAAIQQENIAFLTKLPGIGKKTA QRLIFDLKEKLGALPVTERDLAVSFGLVDPSDEFGTQGVWGEVKQGLLALGYTEAEADRA WSRIQPKVKDTDPADVIMKQALQALFQM >gi|333608343|gb|AFDH01000020.1| GENE 6 3608 - 4612 1041 334 aa, chain + ## HITS:1 COG:BS_ruvBm KEGG:ns NR:ns ## COG: BS_ruvBm COG2255 # Protein_GI_number: 16081161 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, helicase subunit # Organism: Bacillus subtilis # 1 331 3 333 336 466 70.0 1e-131 MEDRIISANLMMEDEIVEFSLRPRYLAEYIGQTQAKENLKIYIEAAKMRKEALDHVLLYG PPGLGKTTLSNIIANELGVNIRTTSGPAIERPGDLAAILTNLQEGDVLFIDEIHRLHRTV EEVLYPAMEDFALDIIIGKGPSARSVRLDLPPFTLIGATTRAGLLSAPLRDRFGVISRLE FYTVDELSYIVSRTCDILQVQIVGEASREIGMRSRGTPRIANRLLKRVRDFAQVKGDGII TVDLARESLRHIQVDDLGLDEIDHKMLRAIITSFRGGPVGLDTIAATIGEESQTIEDVYE PYLLQIGFLQRTPRGRMVTHQAYSHLGLPIPEQN >gi|333608343|gb|AFDH01000020.1| GENE 7 5023 - 9282 1275 1419 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_1158 NR:ns ## KEGG: GYMC10_1158 # Name: not_defined # Def: cell wall/surface repeat protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 794 1419 692 1352 1352 387 36.0 1e-105 MNLKLRKRRLTPMFLAFLLFFLSVMPVPFGINKAMAATNWQPIGNSTVGLNVDVTQETSS PSLIQFNNEVYAAWSESVGYTQKTIHIKKYDGTKWDYVGGGVGFHANPSATATGPVMTVY NNELYITWYELSNIGNQIRVKKYNGSNWTFVDGGGSTGLNMNPPAVAYIPHLVVYKNELY IIWVEDTNGYYQIRVKKFNGSVWTSADGGGDDGLNANPSLHAGSPASVVYNGNLYVSWSE SDWPKSRVRVKKYDGSTWSFVDGPNGLNNNDSSYAESPSLKVFNNDLYAAYSEDNGSGKQ LRVKKFDGSSWASADGGGSVGLNVNASKNARFPILDVYNNTLYLIWSEVNGNNFGGEIRV KKYDGNNWGEASQGIFAMNTSQPNAMHLQLSATRDSLYAAWIEFNGYQNQVRVMKYDGAT WLPAYEEINVGLNGNLIDAYDPDLKEYNGELYAAWVEAGKIKVNKYSNGIVLPVSESQGL NVDPTKEAASPKLAVFQNQLYASWIERDNANVWVLRVKKFVDGYTWINDEDCCRNGLNAD PRNEALFPNLLTTDDGMYAVWAEAGSVGYDIQVKKFDGTWRSLGRAASHTFGDPSLAMFQ NELYGSWLELNGNSYQTRVKKFNGQEWVYADNGEVGGTDDVSSSLIVFNNELYVVWGENS SDRILLKVKRFDGTRWESVENIADSSGGKSLSALKVYGDTLFATWTEWTGRAERVRVKQF NGTSWYAADDGGANGLNVDSSRRAVAPVMEVHNGDLYVSWFEYNGVSNQIRMARYTGAII PPDPSVPPVNPVIPAPPTGLVATPGDGQAFLQWDSVTGATYYQVYQGTSPGSYGSSSAVT VSGATYSTLITGLSNASTYYFAVQAGNADGVSPLSAEVSVMPQAGHKTDLHTLALSQGTL TPAFDFRTLAYTAEVPNSVSSLTVTASVYDPLSTLKVNGAAVLSGQKSSPINLAVGSNII SAEVTAADGATKTYMVNVTREAASSSSGGNSSGSDNSPSTPSGGQTTIDQNASGTVTFEN GQKVINVSVDAAKLVEQLEKGGDKQTFVIPVNQDADKVSVTLNGDAVKAMDNFKQAVIAI ETPNGSYKLPAAQIDFAALSAQFGQQVKPSDLSIRVDIAKSEATKVNFIGSAADKGQFTV MVAPVDFTVSATYKDKTVSMDQFSKFVEREIPIPSGIDPSKITTAVVLNDDGSIRQVPTR FITRGGIHYAVVKSLTNSTYLLIAHQKTFADVEEHWAKDIIHDMASRMVVNGVDDTHFAP NAPITRAEFAAIIVRALGMDNKGKTLAFKDVAATDWFNPAIAKAQEYGIIDGYEDGRFQP EKTVTREEAAVMMVRAMKLAGLEPNVNDADIKSVLSSFADGASVDAWARQGVSAAVKSKL INGTDTGLQPKRDITRAESTVLIHRMLEKTELIDGVRTK >gi|333608343|gb|AFDH01000020.1| GENE 8 9405 - 9527 109 40 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNGLVNKRFWIVLATEAESLILSHVNVVALGFILIVQVNV >gi|333608343|gb|AFDH01000020.1| GENE 9 9798 - 11870 2007 690 aa, chain + ## HITS:1 COG:sll1283 KEGG:ns NR:ns ## COG: sll1283 COG2385 # Protein_GI_number: 16329811 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Sporulation protein and related proteins # Organism: Synechocystis # 292 432 127 268 391 90 40.0 8e-18 MKNSRISWKVVTAALLALVLAAGLFGSAALPLQAAVPKLDTIRVGLFIEHESYRTPEQVV TLSSDKGFKLGVRTPAGVVNLAAEGGATLKASLDGYGVRVLETANWSEAKAAYDKLQSSP SDRAYIINRSKKGAAVYQVYYGSYAAKETANAAKAKAVKATGSAQAVLSGPLHWSAGTYA TAAEAEKQAAAVSQAGADADVVLTSDGSGQAGYSVWVGGEADEAGLAAVKAALPGVALQP ADTASAYLIKRADATAAAAAVPHYFSGAGSQKTWLDGNGAGIKVTEKSNQVYRGSMEISR YNGKFALVNELPFEEYLYSVVSSEMDGSFPLEALKAQAVAARTFAIKKGMKYGIAHLSDS TTDQAYRGMLREAEIVRQAVDATKGEVLVDKSGIIGDPLYSSNSGGQTADASEIWGNAVP YLKSVASPDEGAAKGKPVWYRVALLSGETGYVSGTYLKKTGEKSAAGLEIAASTQGGVNV RTLPSTDSASSPAVAQLKDKERVTLLEQVTESNSYSWFRVYDRAQMEKLLTGAGVKLNGP LQSLEVSKRGPSGRATELKANGEVVKVKYPNDLRNVLGGLPSTLFEIEEPGRYTIVGADG KPTAQTAGSVQVIGGTQAKPQKAGADLFVMGADSQVRSVASGAAGFVIRGTGNGHGLGMS QWGARGLAEQGKTYTEILQTYYTGVWTTKE >gi|333608343|gb|AFDH01000020.1| GENE 10 11880 - 13001 1027 373 aa, chain + ## HITS:1 COG:BH1227 KEGG:ns NR:ns ## COG: BH1227 COG0809 # Protein_GI_number: 15613790 # Func_class: J Translation, ribosomal structure and biogenesis # Function: S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) # Organism: Bacillus halodurans # 1 373 1 341 347 437 58.0 1e-122 MDVQDFDYDLPEELIAQTPLLERTQSRLMTLDKQSGAIAHHTFEQLADYLKAGDLLVMND TRVIPARLFGVKADTGAKVELLLLKPLGEDRWEALARPGKRIKTGTELLFGVQPETAADG TPVVPKEAPLSAVVEAEGEMGARTVRFRYEGIFNEILDKLGEMPLPPYIKEQLPEKERYQ TVYARHAGSAAAPTAGLHFTGDFLDKLKSRGIRLAFVTLHVGLGTFRPVSADKVEEHEMH AEYYELPQETADLINETTAAGGRIVAVGTTSTRTLETAARQSRSASEAQGGSVHTDSGKP YIRACSGWTSIFIYPGVEFQLVDAMLTNFHLPKSTLLMLISAMAGRESILNAYREAVERK YRFFSFGDAMFIY >gi|333608343|gb|AFDH01000020.1| GENE 11 13022 - 14158 1004 378 aa, chain + ## HITS:1 COG:BS_tgt KEGG:ns NR:ns ## COG: BS_tgt COG0343 # Protein_GI_number: 16079824 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Queuine/archaeosine tRNA-ribosyltransferase # Organism: Bacillus subtilis # 4 378 6 381 381 623 77.0 1e-178 MAAVTYEHIKTCKQTGARLGRVHTPHGVIETPAFMPVGTQATVKTMSPEELKAMDAHIIL SNTYHLFLRPGHELVKKAGGLHKFMNWDRPILTDSGGFQVFSLSDIRKITEEGVQFRSHL NGDKLFISPEKAMEIQNALGSDIMMAFDECPPYPATYEYVKDSLERTTRWAERCLKSHAR LGDQGLFAIVQGGMYADLRKQSAEQLTSMDFPGYAIGGLSVGEPKHLMYEMLECTTPLLP TGKPRYLMGVGSPDALIEGAIRGVDMFDCVLPTRIARNGTVMTSAGRLVIRNAKHADDLG PLDPECSCYTCTNYSRAYIRHLIKADETFGIRLTTYHNLHFLLELMRGVRQAIREDRLGD FRDEFFTKYGLHDNDKGF >gi|333608343|gb|AFDH01000020.1| GENE 12 14178 - 14498 450 106 aa, chain + ## HITS:1 COG:BH1229 KEGG:ns NR:ns ## COG: BH1229 COG1862 # Protein_GI_number: 15613792 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YajC # Organism: Bacillus halodurans # 20 96 9 85 88 96 64.0 9e-21 MSNLAAAANASPYGSLVTYIPLILMFLVLYFLLIRPQQKRTKTRNMMLANLKKNDKIVTI GGLHGTILEITDDIVVLRVNDATKMTFDRSAINTVVTSSAVAEEKK >gi|333608343|gb|AFDH01000020.1| GENE 13 14588 - 15433 631 281 aa, chain - ## HITS:1 COG:CAC0633 KEGG:ns NR:ns ## COG: CAC0633 COG0671 # Protein_GI_number: 15893921 # Func_class: I Lipid transport and metabolism # Function: Membrane-associated phospholipid phosphatase # Organism: Clostridium acetobutylicum # 13 253 75 284 321 60 28.0 3e-09 MYPLQSMTHATVYIVISIYVLLYLSLRKNPFFVAGAFVQDFFTKRKFFFHFAAVMAILFF NKVELWIESKMHYTADFTAKIHGLEGDFVAGFQHLFYNNTVTLVTSIFYVIVFPCLMIVS ILIYTYQKKYRLFYALCYTVMINYIIAIPFYLFFPVQEVWAFHPNVKLLILEVFPKFEAE YRPLSGLDNCFPSLHTSISVSMALLASRSRNRLWKWFSLLSCVVIIFSIFYLGIHWLTDM CGGVLLGVFAARLGLSISEERPFFSRVLLPQRRLQKQEVSE >gi|333608343|gb|AFDH01000020.1| GENE 14 15527 - 15919 520 130 aa, chain - ## HITS:1 COG:no KEGG:PPSC2_c4120 NR:ns ## KEGG: PPSC2_c4120 # Name: not_defined # Def: protein # Organism: P.polymyxa_SC2 # Pathway: not_defined # 4 128 4 128 129 99 47.0 4e-20 MIPINKVSQVRLSSPFLSGLLYAFIMLVAGTVLTSLILLLSRTQESSLSTLAYITHGLSV FVGGWVAGKRAGRKGWYYGGMLGIFYALIVWTIGFLAVDTAFDLKTLVLAGFAFVAGALG GMIGVNSSSK >gi|333608343|gb|AFDH01000020.1| GENE 15 16039 - 17358 832 439 aa, chain + ## HITS:1 COG:PH1912 KEGG:ns NR:ns ## COG: PH1912 COG1055 # Protein_GI_number: 14591655 # Func_class: P Inorganic ion transport and metabolism # Function: Na+/H+ antiporter NhaD and related arsenite permeases # Organism: Pyrococcus horikoshii # 38 437 32 422 424 122 23.0 2e-27 MHEAVQNAGWQAAAAAVVALMAVGLGLKFVRCRAWFPLAGAAVLLAAGIAGPPAAVIETV PWRALALALTMGIIAAVIEEAGWLQLTAVRFYRLTSANPQKMLAMSMMLAAAASALLDGL TAMAALLPLLLAFTRAWKIPPSPFVIGMMLACNLGSGLSVAGTMPARLIGTAGELGLTGV WLVLGPLHAVLLVLAYLMIRTVYADKLKVGTERLRELQTAASGMDGSKGDIRNPAIALGL ILLAYICADLSGLDLIWISGAGAALLFRSVIKRRGSLKSFAAGFVPLLALTAGWLLIAGA LVQTGVLETAAGWLMKASSGDDQRAVLAVLWMSAVGAAFSDGTAWTAFSVPVVQIVSEQL QAVSPDHAGRLWYVLLSGIHLGANATSFSSFSSLLAFGVACSRKNGLTFREYARIGVPFS LFSLTLASLYLVGFWFGNN >gi|333608343|gb|AFDH01000020.1| GENE 16 17442 - 18131 610 229 aa, chain + ## HITS:1 COG:BH1232 KEGG:ns NR:ns ## COG: BH1232 COG2323 # Protein_GI_number: 15613795 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Bacillus halodurans # 1 227 1 216 218 220 50.0 1e-57 MELLTIFLRTVMIYFVVFVMLRIMGKREIGKLSVFDLVISIMIAEIAVFVLEDIRMPMAN GMVPMITLVLIQLLMAFITLKSQRFRTLFEGRPSVLIEHGKLNREEMRKQRYNLDDLMMQ LRQHKVMNVADVEFAILEPSGKLSVVEKYHPSRKPEMGPVESGRIRYAGLPVALVMDGKV QEDNLQKVGQTRFWLKSELKKKGIADFKEVFFCSVDHRGYLYVDKKDRV >gi|333608343|gb|AFDH01000020.1| GENE 17 18196 - 19767 1748 523 aa, chain - ## HITS:1 COG:BH1233 KEGG:ns NR:ns ## COG: BH1233 COG2244 # Protein_GI_number: 15613796 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Bacillus halodurans # 1 516 1 513 522 361 44.0 2e-99 MTKQSFLKGTMILLAAGIVNRILGFIPRITLPRVIGAEGVGLYQMGWPFLIVILTIVTGG IPLAVSKLVAEAEAERNYRRSARILKLALTLSVSISGIFTAVCILGARWITSHLLTDERV YFTFLCMSPIIPIIAVSSVLRGYFQGKQDMIPTATSQTIETLVRIVMVLLCSFALLPYGI SWAAAGAMIGVTIGEIAGMLVLLIHYKLQRKNNMPVNKAQIGTSAAQGRMTQLRRLLTLS LPITASRLVGAGSYLLESILIAHSLAAAGIATALATAQYGALQGMIIPIILLPSALTSSL SVSLVPSLSEAAARKDLKTIHKRMHQSLRLALVTGAPFAVIMYVLADPLCLLMYGQKDIA VMLKMLAPVAIFIYLQAPLQAALQALDKPGSALINTLIGSLIKLLLIVWLASKPEFGILG AVMASCVNIVLVTFLHGLSVLRHLKFTLRGSDVAKVSAAMGIASLCCYAVYRSIGSLPAG VSFLLASAAALTAYLAAVTVLKIVNRSDLSRLLTLGRKIIRKP >gi|333608343|gb|AFDH01000020.1| GENE 18 19950 - 20651 601 233 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_4390 NR:ns ## KEGG: Pjdr2_4390 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 151 231 9 89 93 105 59.0 2e-21 MNSETDKLETASAAAEEQSGAPEDAKEKTEAPLLPEGLLEAEALAEAESLETMLEPEEII EEDKEADVADGRPESRGTLHESGREAETDEAPETSTVVEISSMDETAAAAEPVQAVVIDP ADSFEVEAEPAFDMAVEGEVDTPVVPSTEEEPEPERLTDRELNEMIEGLCLSKAEEFQMI GYEHVKGEEIWECINDRYKKKGLPPLHQVVNDILSLKPNQFMNYLTLSMYRRS >gi|333608343|gb|AFDH01000020.1| GENE 19 20763 - 21995 1314 410 aa, chain + ## HITS:1 COG:BS_secDF_1 KEGG:ns NR:ns ## COG: BS_secDF_1 COG0342 # Protein_GI_number: 16081162 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecD # Organism: Bacillus subtilis # 1 410 1 431 446 357 45.0 2e-98 MNVKRISAFFITVIVTLAVIATTSPGLLGKIKLGLDLKGGFEILYVAEPFTAGQKVTPAT LKKAAESIAQRADKLGVAEPEVLAEGENRIRVRLAGVQNEDEVRQKIGKPSSLTFRDPDG NNMLIGTDFVEGGASVGYDSTNQPVVQIKLKDRSKFKDVTTKMVGKPLSIFLDEEKLSSP MVNTPIDSDVATITGSFKFEEAQKLADTINLGALPLKLTEKYTQVVGASLGQMSLEQTIR AGIIASVIILVFMILLYRLPGIIAAFTLITYTWLLLVLFDWINATLTLPGIAALVLGIGM AVDANIITYERIKEEIRSGKSIPSSLKAGSKASFRTIMDANITNIISSLVLYYIGNGAIK GFALTTMLSIIVSILTNVFFSRFLIHLLIKGNVFKKPGYFGVKEAEIREL >gi|333608343|gb|AFDH01000020.1| GENE 20 21985 - 22905 1010 306 aa, chain + ## HITS:1 COG:BH1237 KEGG:ns NR:ns ## COG: BH1237 COG0341 # Protein_GI_number: 15613800 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecF # Organism: Bacillus halodurans # 1 284 1 285 311 243 46.0 4e-64 MNYSNKFNFVKHRNIFFAISGILVLAGIVTLLLFQMNYGVDFKAGTSIDVSVGQAITKEK AQEIYKGAGFDQTVTVGGANGDRVSTRFDEILGKEQVDKIKAAFEAPYKDKVSMEVNTVS PDIAKELAIKAIIGILIASVAISIYVSIRFEWRFAVAAIISILHDAFIVVAMFAIFRFEV DLPFVAAVLTTVGYSINDKIVIFDRIRENLRFAKLKTPEDLEKLVHDSTWQTMARNINTV LTVLIAAVCLFIFGSESIKLFALAKIIGLTSGAYSSICIASPLWYLLKRNSLGNKRKAAP AAAAKE >gi|333608343|gb|AFDH01000020.1| GENE 21 22997 - 23950 838 317 aa, chain + ## HITS:1 COG:BH0712 KEGG:ns NR:ns ## COG: BH0712 COG0053 # Protein_GI_number: 15613275 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted Co/Zn/Cd cation transporters # Organism: Bacillus halodurans # 3 297 2 296 307 234 39.0 2e-61 MSDERFQKAEVAAWIGIGGNIGLTVLKGVVGVMAGSRSLLADAVHSASDTAGSFASLRSL KAPGTPVDHGRSYGRDKAESIAAILIAVIMTIISVEISMNAVKDMVSGVHNAPESYALIA VIASLVCKEVMFRYNYWVGKKLGSRDLVTGTWEHRSGVYSSIMALAGVGGALIGEKMGWG FMYYLDPAAAVAVTLLIVKNSYGVITDALQKTMDRALHQEDARDMIDAVQGVKGVISVED LRAREHGHYVIVELRISVNPRISVLEGNDIARSVKYQLMKKFIHLSDVTIHVFPYDSGYP YKNGIDAAANDSEQMLH >gi|333608343|gb|AFDH01000020.1| GENE 22 23994 - 26456 2108 820 aa, chain + ## HITS:1 COG:BH1240_1 KEGG:ns NR:ns ## COG: BH1240_1 COG0608 # Protein_GI_number: 15613803 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-specific exonuclease # Organism: Bacillus halodurans # 1 572 1 562 562 548 49.0 1e-155 MLESKARWRLGAGDEAVAGQLCDALGIDPLLARLLVLRGISSVPEAEQFLSGGSGHFHDP FLMEGMETAVSRIRSALSSGEKIRVYGDYDADGVSSTALMAHLLRGLGANFDTYIPHRVK EGYGLNKGAVDLAKEQGVSLIITVDTGVSAVEEVAYIQELGMDVIVTDHHEPPGTLPQPL ALINPKKETCPYPFKGLAGVGVALKLAQGLLGRLPEELLEIAAIGTVADLMPLHDENRLI VKLGLERMRKSAYPGLRALMDVSGVDRSGVNATHIGFSLAPRINASGRLEHASTALKLLV TEDEAEAVSIAEELDLLNKERQFIVDELTGLAKAAVQEEQDGALKRGETPKNFLVVSGEK WNVGVVGIVASRLVDTYYRPTIVLSIDPDTGMAKGSARSIAGFDMYQALTHCADLLDHYG GHQAAAGMSLRRENIAEFERRLNVLAGEWLSAEDFIPLLAVDAECSLSEVPLECIEELEK LAPFGVGNPAPKILFSGLRLDEIKLMGRERQHLKLVLTDAAAEIAAGVEAVGFGKGWLGS LMTPQAPVDIVGELSVNEWNGVRKPQLMLQDLRIPALQVFDWRGKPAARVGEDLAALGER LAALPGRGSARPPALVLFGEEDRAPGAGGRPAGPVWRCLPDGSLAADNEAARELQFPEMT DIVLCTAPRSLAQLERALAQADGIRRCYAVFADPVPQDGGAMPTRDQFKAVYASVRQQGM WDLRNPALLQSFSRRSGLSAAMISFVLDVFEELGFIEKAGGVVRPVAAPSKRDLTTSRKY QERLSRAEVDRVCVYTSAKELSDWIAGCRSSQQLSSAQPT >gi|333608343|gb|AFDH01000020.1| GENE 23 26471 - 26986 722 171 aa, chain + ## HITS:1 COG:BH1241 KEGG:ns NR:ns ## COG: BH1241 COG0503 # Protein_GI_number: 15613804 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Bacillus halodurans # 1 171 1 170 171 236 67.0 1e-62 MNFKEYIRVIEDFPQPGIRFKDITTLLQNGAVYKEAIDEIARFVKDKEIDLIAGPEARGF VVGAPLAYALGVGFVPIRKSGKLPGKTIEADYSLEYGKDKLAVHDNAIKPGQRVLIADDL LATGGTIKTCVNLIEQLGGEVAGSAFLIELTYLNGREQLPAGKDVFTLIQY Prediction of potential genes in microbial genomes Time: Sun Jul 17 07:52:53 2011 Seq name: gi|333608316|gb|AFDH01000021.1| Paenibacillus sp. HGF7 contig00039, whole genome shotgun sequence Length of sequence - 20322 bp Number of predicted genes - 23, with homology - 17 Number of transcription units - 12, operones - 6 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 482 - 1192 -45 ## Cpin_3508 hypothetical protein 2 2 Tu 1 . - CDS 1544 - 2017 -99 ## gi|229074045|ref|ZP_04207101.1| hypothetical protein bcere0025_61230 - Prom 2134 - 2193 3.9 - Term 2615 - 2665 6.1 3 3 Tu 1 . - CDS 2710 - 4308 916 ## Patl_0123 coagulation factor 5/8 type-like - Prom 4342 - 4401 5.2 4 4 Op 1 . - CDS 4432 - 4791 467 ## Dtox_1947 transcriptional regulator, ArsR family 5 4 Op 2 . - CDS 4831 - 5961 590 ## GYMC10_2864 hypothetical protein 6 4 Op 3 . - CDS 5885 - 7039 880 ## BBR47_51310 hypothetical protein 7 4 Op 4 . - CDS 7064 - 7543 467 ## Cthe_3111 hypothetical protein - Prom 7641 - 7700 5.7 - Term 7690 - 7731 9.5 8 5 Tu 1 . - CDS 7765 - 8535 313 ## PPE_03396 hypothetical protein - Prom 8602 - 8661 2.8 - Term 8630 - 8701 20.1 9 6 Op 1 . - CDS 8759 - 9928 952 ## COG1680 Beta-lactamase class C and other penicillin binding proteins 10 6 Op 2 . - CDS 10019 - 10453 308 ## PPE_03323 hypothetical protein - Prom 10539 - 10598 4.8 + Prom 10326 - 10385 4.1 11 7 Tu 1 . + CDS 10431 - 10988 334 ## - Term 11028 - 11074 10.0 12 8 Op 1 . - CDS 11119 - 11967 172 ## PPSC2_c2945 ig group 2 domain protein - Prom 11993 - 12052 2.6 13 8 Op 2 . - CDS 12054 - 12161 112 ## - Prom 12187 - 12246 10.3 + Prom 12187 - 12246 7.9 14 9 Op 1 . + CDS 12327 - 12524 203 ## + Term 12604 - 12636 2.8 15 9 Op 2 . + CDS 12795 - 13670 631 ## COG0648 Endonuclease IV + Term 13723 - 13767 12.4 - Term 13715 - 13750 4.1 16 10 Tu 1 . - CDS 13805 - 15625 1132 ## COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component - Prom 15821 - 15880 6.9 - Term 15949 - 15992 1.6 17 11 Op 1 . - CDS 16063 - 16476 307 ## 18 11 Op 2 . - CDS 16451 - 16984 143 ## PPE_00168 hypothetical protein 19 11 Op 3 . - CDS 17031 - 17426 252 ## PPE_00169 hypothetical protein - Term 17445 - 17479 4.5 20 12 Op 1 . - CDS 17491 - 17670 135 ## 21 12 Op 2 . - CDS 17734 - 18189 372 ## PPE_00170 methylamine utilization protein 22 12 Op 3 . - CDS 18215 - 19933 250 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 23 12 Op 4 . - CDS 19981 - 20259 306 ## Predicted protein(s) >gi|333608316|gb|AFDH01000021.1| GENE 1 482 - 1192 -45 236 aa, chain - ## HITS:1 COG:no KEGG:Cpin_3508 NR:ns ## KEGG: Cpin_3508 # Name: not_defined # Def: hypothetical protein # Organism: C.pinensis # Pathway: not_defined # 2 224 8 229 370 176 41.0 8e-43 MLRDLVVQKKPRETSGSRSANRFDFQKDWAILKLFELHQCKDDYLLVLDYHDDVMVLDSE RDPQSAAFFQLKTKDNGVWKLNDIVKTKKGKKGLLPSIIGKLYDCKLTFPNHTLSLTLVS NACFEISLQNHVGKSTDKKSICFTDIEQKDLNKIITAIKTEHSLQEEPDFVEITFLEVTD LNIKDRETYMKGKLHEFLESMNPKNGKFRLSLIYNTIFGEVKRKMIMSGAFQTSMK >gi|333608316|gb|AFDH01000021.1| GENE 2 1544 - 2017 -99 157 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|229074045|ref|ZP_04207101.1| ## NR: gi|229074045|ref|ZP_04207101.1| hypothetical protein bcere0025_61230 [Bacillus cereus F65185] hypothetical protein bcere0025_61230 [Bacillus cereus F65185] # 1 154 4 156 220 167 54.0 3e-40 MKCVKCNQNVEQEHLYCPFCAEPNNNRSFENNSINAGKNNINIGLGNNSKQQIYIDNFNV NRSTDELIVECTEQLDRKVIGGVNGFKQKFEICGILSVVSAVVTITDYLLTKSNYTVLLL MSTLGLFAYAFDSREKFKELRKNGIVYRDKKPILFEV >gi|333608316|gb|AFDH01000021.1| GENE 3 2710 - 4308 916 532 aa, chain - ## HITS:1 COG:no KEGG:Patl_0123 NR:ns ## KEGG: Patl_0123 # Name: not_defined # Def: coagulation factor 5/8 type-like # Organism: P.atlantica # Pathway: not_defined # 6 345 313 676 944 157 30.0 1e-36 MRKFKALIFAAAVGIAFSSSVHLPSAAAAQPTSIAIPTNLALGGKVTASGEYAPHQGKDK AFDQDVFSKWLTFSSPAWLQYEFPAAKVVTSYTITSAEDEPYRDPKSWVLKGSNDGSNWT QLDTRQNQNFTSRHQTKTYSFTNQTAYKFVKFDDFNNQNGSGILQLSEIKLFDGCAKTWS TTKPTVTASGEHTPTNIKEHLVDGTSVTKWLIKDDTAWLKFDFGEQVTLDGYALTAANDR PERDPKSWVLQGSNDDKTWTGIDTKSDENFNVRHQRKHYLLTNNTKAFQYYRLNNIKNHS GNSIQLGEVDFSRTNDIGHAVNPVIEVNNLDSSGNGSLFTKALPNAEKEILAVARKVHEL LYSNPADAPVDVKKILVTIEDVPGVAWTSGDSTQKTVGFSSQYLKKFVASPSKSLREEII GILYHEIGHVYQYSNFDVEAIADSLRFEAGYHDRYSATKGGTWQTKGTANFLRWIEDTKK RGFIRELNAAPIPYNIIGNANEIQLWKERQFKVITGTDVNTLWSQYQATLTD >gi|333608316|gb|AFDH01000021.1| GENE 4 4432 - 4791 467 119 aa, chain - ## HITS:1 COG:no KEGG:Dtox_1947 NR:ns ## KEGG: Dtox_1947 # Name: not_defined # Def: transcriptional regulator, ArsR family # Organism: D.acetoxidans # Pathway: not_defined # 1 119 1 119 119 147 65.0 2e-34 MDKTKRKELLEEYKQVKTYMGAIQILNKTNGKIYVDTYPNLKNKWITLQAQLDMGRFANL QLQKDWKELGAENFAFEVLEQKEASEITDIRWERKQLKKRWLEKLEPYGDRGYNKPPEE >gi|333608316|gb|AFDH01000021.1| GENE 5 4831 - 5961 590 376 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_2864 NR:ns ## KEGG: GYMC10_2864 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 6 376 369 739 739 501 71.0 1e-140 MPKQKKRITDEAELKTEGTIGSTEFERDDELEEPGIVLKKSADSDENTSEVSDDSTTTEF SDREEDGAPKYHQANLETKSKEARQKERDYRKKLNRDAREVVSGSIHNKVKLIVHRPDYD NDSEREYARLSEELMPVVREIARKTLPLLEHETSSEFARHQYYGSKFQADSIAYRDFRNF AKKLPPTDSPSLVVGLRVDESASMSAFGRLEAAKRAVIAVYEFCQICRIPVLIYGDTADA SRLEQMSIYAYTDLDKTDPNDRYRLTGIRARSNNRDGMALRIMADRLAASPQQTKLLISI SDGQPKAMENYTGTYAIRDMQQTMAEYERKGITFLAAAIGQDKDVIHQIYGSERFLDITN LPDLPAKLVRIIARYL >gi|333608316|gb|AFDH01000021.1| GENE 6 5885 - 7039 880 384 aa, chain - ## HITS:1 COG:no KEGG:BBR47_51310 NR:ns ## KEGG: BBR47_51310 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 1 368 1 369 373 561 76.0 1e-158 MNVNQDYYVSPDRQLTDAEQALVWKKPASHKVSEEEIRICKEIKRNWNRGEMKIANVLLE GDAGSGKTQLAKALSADLGLPYTKVTCFADMDKSDIIGAILPVITPDRVENMEPAEQTVL KALYDSDGFQSAAELVMNVLGVTREQAAVTMKQLLNKMEQNSPNDVVEYRFYPSEIVRAY RSGYLLEIQEPTVIRDAAVLMALNSALELDGSINLPTEIIRRHPDFVAVITTNRSYAGTR PLNEALRDRVQHSEKMDLPTKEIMVERAMSKTGYKNEKVLDILAEIIILLDKTARVNAIK GVAGMRSFFYWADAVADGASAKESLYHKVIYKITTDSEEIHLLEEALKSRGLLNGLDQVD AEAKKKNNGRSGAKNRGNDWQHGI >gi|333608316|gb|AFDH01000021.1| GENE 7 7064 - 7543 467 159 aa, chain - ## HITS:1 COG:no KEGG:Cthe_3111 NR:ns ## KEGG: Cthe_3111 # Name: not_defined # Def: hypothetical protein # Organism: C.thermocellum # Pathway: not_defined # 1 159 1 159 159 271 79.0 8e-72 MKIPTTLKHKPVIVSENYEQVDGRLARNTDAKGLSLGLAQWNDRGKVDISAKVWRHTGEK WSRQSEELPMHRVLDLAIMICRSSLYFQDAYRFPKLYDPENPMIDRIGLQGDAMSVSVCE DNPMLDQDIKLFAQALSEDGEMIGERLRVLSRLLEEMGY >gi|333608316|gb|AFDH01000021.1| GENE 8 7765 - 8535 313 256 aa, chain - ## HITS:1 COG:no KEGG:PPE_03396 NR:ns ## KEGG: PPE_03396 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 1 256 9 265 265 390 73.0 1e-107 MTTTFWSATGWKYRPEDFAGEDFEYAKSKGLMFDPLSVKHDELIKRLHDLHQTITKEQVA AAFLHSLSTKKVHLRSALSSWALTAKLPLHTYGERRAVRANYSSCGDCNHHGLMSDREYA NADLNVLNFERIKWGGIRLNWLLYCWLDLELFSKEEAFDVTPEDRAILHKMTEAIQECED HDSARKLEKRWKDVLPSSKNERDVAMEIWGYAGLLVQGDTPRRRRGGDHDFNSVAGWQGD DRYSREALEFYFGAFL >gi|333608316|gb|AFDH01000021.1| GENE 9 8759 - 9928 952 389 aa, chain - ## HITS:1 COG:all2656 KEGG:ns NR:ns ## COG: all2656 COG1680 # Protein_GI_number: 17230148 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Nostoc sp. PCC 7120 # 32 385 20 366 414 192 35.0 9e-49 MKMPYKIVSASLALFVTGTSLMYAAPGSTVKAEAAASVTSSMEAQAKGNHSAVKKALREA LKTGLPGILVKTNENGKRWAYSAGIADLATEQQMETNYRFRIGSVTKTFTAAAVLQLAGE NRLNLDDSIDKWLPGVIQGNGYDGKQITVRQLLNHTSGIADYLKSDKINLMETRKSYTPE EIVKIGLAMPADFAPGKGWSYSNTGYVLLGMLIEKVTGTSYAEEIEKRIIEPLELTDTFL PGNSTVIPGSKHARGYFQPELGKEPIEVTYYNPSVASSAGDIISSAEDLNKFFSALLGGQ LLKEEQLKQMLTPVETGRKDFAGYGLGIYAFTLKNGDTVWGHTGGIPGFATFGGGTLGGK HTLAVSTNYLGAAIEHETFIKIVKAEFDK >gi|333608316|gb|AFDH01000021.1| GENE 10 10019 - 10453 308 144 aa, chain - ## HITS:1 COG:no KEGG:PPE_03323 NR:ns ## KEGG: PPE_03323 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 1 135 1 134 137 182 65.0 4e-45 MQIVSAAITDFDYLLDRDPHIEEDLILPKIRNKEIYILRNEENVNIGWMRYGYFWDNTPF MNMLWIDEPYRGGGFGKEVVLFWEKEMTKRGFKLVMTSTLANEEAQHFYRKLGYRDAGCL LLENEPMEIIMTKRLLFTMSSPKS >gi|333608316|gb|AFDH01000021.1| GENE 11 10431 - 10988 334 185 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MAAETICMVFSFVINKVYFTYHITYECERKRCPAYEKQYFEKIEQHYEIVFPSDYLSFLQ NAEKQGYNFVENGDVTDWEVRFSELDERFIETNRNLVDDVNPDPKRLIPFAWSVSSGNNY LFDYRTNPSSPSVVLMDHEEAMVREDAESESETPEEAQELMEQNVREAAGSFAEFASRLQ AYTAE >gi|333608316|gb|AFDH01000021.1| GENE 12 11119 - 11967 172 282 aa, chain - ## HITS:1 COG:no KEGG:PPSC2_c2945 NR:ns ## KEGG: PPSC2_c2945 # Name: not_defined # Def: ig group 2 domain protein # Organism: P.polymyxa_SC2 # Pathway: not_defined # 2 282 9 292 294 295 53.0 2e-78 MEPTQTYQGGYYYSRDQGAKISFSFTGTKFRLIAPIYKLQSSDITVKVDGVVVDKYSTYS ATKLVHQAIVYESALEDGKHDIEIINNDAGKELEVDAIDLYGSGKLVDINAPLHLNATGG DSQVTLSWNAVGNSDSYTIRYGTNSGNYTQTVIVTKDVYGHYVIPNLVNGTTYYFVVTAT LNGVESSYSNEASATPQADEKPNPNPSGERAILTIYLTNGTEKEYDLSMLEVNAFISWYD GKDLGVGPAKYKFVKTWNKGPFKNRTEYIIFDKILTFNVDEY >gi|333608316|gb|AFDH01000021.1| GENE 13 12054 - 12161 112 35 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRWSTLIGKWFLLFSAVILFLVFKVVFMQLLWVIS >gi|333608316|gb|AFDH01000021.1| GENE 14 12327 - 12524 203 65 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFDYRTNPSTPSVVLMDHEEAMMREDAESESETPEEAQELMEQNVREAAGSFAEFASRLQ AYTAE >gi|333608316|gb|AFDH01000021.1| GENE 15 12795 - 13670 631 291 aa, chain + ## HITS:1 COG:lin1487 KEGG:ns NR:ns ## COG: lin1487 COG0648 # Protein_GI_number: 16800555 # Func_class: L Replication, recombination and repair # Function: Endonuclease IV # Organism: Listeria innocua # 3 288 2 288 297 400 68.0 1e-111 MSLLIGSHVSMSGTTMLLRASEEAASYGATTFLIYTGAPQNTRRKPIEAFNLEAGKAHMK AHGISNIVVHAPFLINLGNTVNTRTFEHSIEFLRSEIQRTEALGSNQIVLHPGAHRGAGA KAGIRRIIEGLNEVLTEKRDVQVSLETMAGKGTECGRTFEELAEIIDGVTHNERLSVCLD TCHIHDAGYNIAEDFDGVLHEFDQIVGLDRIQVIHVNDSKNERGSRKDRHENIGHGFIGL KALDYIVHHPQFDQVPKLLETPSIGPVKYKNAPYKHEIALLRREVTEPIVK >gi|333608316|gb|AFDH01000021.1| GENE 16 13805 - 15625 1132 606 aa, chain - ## HITS:1 COG:lin2073 KEGG:ns NR:ns ## COG: lin2073 COG0614 # Protein_GI_number: 16801139 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-hydroxamate transport system, periplasmic component # Organism: Listeria innocua # 288 598 19 310 313 143 30.0 1e-33 MDGELFQISGFHVLHGGKGSRVDIYAVEEPFSYYLLYYKAYFPVPLRKEAAEMADGCNPF QLQYGLTPHHPLSLMSKIRLMHQEWVTQGNLERLHVKALFYQFVHELLAQVHARNIPAAK ADVAEQARRYLQENYTEPITLEKLAELLDSSPRHLTRLFKRKTGTSPIDYMIRLRLDKAK EMLLATDMTLQEIAESIGYPDSYSLAKMFKKQVGIAPIRYRTEKRNRRSCPDLPSDTAVF DIAGKDRLNYIEYDNHSQYKKELNFPMLYSRRPSAAITLLLCLMILLSACSTGKTSGSAN SNSLPSPSPPPVAANTDSSQTVPSKPATKMISTAKGDVEIPVNPKRVVVLYLLGDVLAFD VMPVGISDVYKGAAFEKELSGVRSLGEWFKPSPEAVLALEPDLIIAPSEETYGMLNKIAP TVYLPYEQMTMEERLNKLAEALGKEKESAKLLDNFHKKVEQSKQKLKQAGIYDKTVTIME GGKSSMTVISSRNYGRGSQVIYEYLGMKAPAVLQKEIDAVSKAASSKNVSLEVLNQYSGD YVFRSSYEGMEDLSQNPVWNQIPAVKEGRLTEMSFGLSYYNDIYSLDKQLDFVMENLLAK GEKQVN >gi|333608316|gb|AFDH01000021.1| GENE 17 16063 - 16476 307 137 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSNLLFLCNLVWFLACVLLLFIQKRKERDEVTALIGEIKRLSSRQRSVTRILFADYKDPA FQKIDSLLSTSADGPDYIVVIDAPSWLIAAREKKWTRHETIDARMIASTRKSGVIVTRGG KYAVYDEAAAYLAYTSS >gi|333608316|gb|AFDH01000021.1| GENE 18 16451 - 16984 143 177 aa, chain - ## HITS:1 COG:no KEGG:PPE_00168 NR:ns ## KEGG: PPE_00168 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 1 117 1 118 172 97 44.0 3e-19 MVQWLGYVLDMTMSVLFFMPFYIKAIRFRNFRIELYSYGILPRSLVSIAALVVLSVEFVL FLSFAIGLFGGWRELAAIVLLAAFAFFSWRKTKLTGVDTCACYGEIAFLNRSPVYRNAVL IGLLAAGLLLPAPEQDGYARINSLLFVMALSISIGLLQSAWNHRKRRKRREQSAVPM >gi|333608316|gb|AFDH01000021.1| GENE 19 17031 - 17426 252 131 aa, chain - ## HITS:1 COG:no KEGG:PPE_00169 NR:ns ## KEGG: PPE_00169 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 1 127 1 127 129 120 48.0 2e-26 MNAQILVCDQITNNTLLGGHVLGTVLNQVSIPALPYVIEMHVLIKLFDLPRDEFVDTALI ITNSSGEMIDRTPATVLRNYRGEDQVPGVDQDVSLHLIVTEPGIIYIRCIINGEEAAWYP LTIRLQEQKVS >gi|333608316|gb|AFDH01000021.1| GENE 20 17491 - 17670 135 59 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MACKCPDGEVLAESRACLTGYCTANGTQYPKILTSTKTIGCTSGTWETVVCTFNAGCCY >gi|333608316|gb|AFDH01000021.1| GENE 21 17734 - 18189 372 151 aa, chain - ## HITS:1 COG:no KEGG:PPE_00170 NR:ns ## KEGG: PPE_00170 # Name: not_defined # Def: methylamine utilization protein # Organism: P.polymyxa # Pathway: not_defined # 1 143 1 141 144 115 40.0 8e-25 MTSSAKPSRLSDTGLPLGASLPELPDYLKEGMGAARNQSCTIRVLLFASVYCTHCIDLLP HLQTIAENHPTFSFGLFTTGDEEDHRSMKEYFGWDFPVSTMDQSDMEAYFQVTALPFMML IDKSDIIAAKGVIYNADDFEQILRTSGIHLT >gi|333608316|gb|AFDH01000021.1| GENE 22 18215 - 19933 250 572 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 328 555 2 228 245 100 30 6e-21 MYAFNKIIVLFSLFAYVFSAVQANVSVYLSKLIVDQLTIKNFYLLMGGIVLLILFQLTRV ALDAYAQLKSRKMSLMFAIQCEGKLIDLVEKTDLIEKEHPRFKGDFSYWSYSNNKYYDTY LIAIGLIKQIILASLSLFFLLHSYWLTGILALLVGTWRGIYDLLAVRRRVEIDEQLMRNT RSHHYYYDLLTNSETQKEMMLFRLFPYFRKRWLEKKMESAELQIKLEKLNHQRTFRGELL SILNTAAVTVITAYLIYKGSLSIGDYVAITMALSMTENNISSLFTSYSRLKEYCTHIEKL KVIEENNEVAVGAEKNVRSKPFVFEKDIRIQDLSFRYPNQDQPALNGISAEIKKGEVVAI LGENGSGKSTLIKLLLGLYQTEEDSIFYDDVSLKKLDRFQMWQKSSAVFQDFIRYMTDVR ENVAAGNIGEIQDSEKLEQMLARVGLADAFKHGLNSRLGFLDDGAVNLSGGQWQRLALSR VFVRDDDDLVVFDEPTAALDPLSEVRLMNELLSHFKGKTVLLISHRVGVARNADRIIVME RGRIAETGNHEELLERQGLYSEIWNQQKQWYV >gi|333608316|gb|AFDH01000021.1| GENE 23 19981 - 20259 306 92 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSSHPGFNYCILFEGNQESVEDLRKELDPEVRIHRCETAKLQTQLQVNAVPYAIVLNKVG QAVGADIFDKMANLNRAAAPLIRVYNNLNPDK Prediction of potential genes in microbial genomes Time: Sun Jul 17 07:54:38 2011 Seq name: gi|333608281|gb|AFDH01000022.1| Paenibacillus sp. HGF7 contig00014, whole genome shotgun sequence Length of sequence - 27397 bp Number of predicted genes - 33, with homology - 31 Number of transcription units - 11, operones - 8 average op.length - 3.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 37/0.000 - CDS 2 - 604 397 ## PROTEIN SUPPORTED gi|149916131|ref|ZP_01904653.1| 50S ribosomal protein L25/general stress protein Ctc 2 1 Op 2 23/0.000 - CDS 591 - 1799 1081 ## COG0133 Tryptophan synthase beta chain 3 1 Op 3 9/0.000 - CDS 1799 - 2374 361 ## COG0135 Phosphoribosylanthranilate isomerase - Prom 2451 - 2510 3.4 - Term 2414 - 2444 0.3 4 1 Op 4 21/0.000 - CDS 2619 - 3422 848 ## COG0134 Indole-3-glycerol phosphate synthase 5 1 Op 5 10/0.000 - CDS 3412 - 4452 1123 ## COG0547 Anthranilate phosphoribosyltransferase - Prom 4472 - 4531 2.9 6 1 Op 6 2/0.000 - CDS 4562 - 6106 1375 ## COG0147 Anthranilate/para-aminobenzoate synthases component I - Prom 6134 - 6193 8.6 - Term 6288 - 6320 1.1 7 2 Op 1 3/0.000 - CDS 6456 - 6833 423 ## COG4401 Chorismate mutase 8 2 Op 2 7/0.000 - CDS 6836 - 7930 1060 ## COG0337 3-dehydroquinate synthetase 9 2 Op 3 . - CDS 7932 - 9095 1138 ## COG0082 Chorismate synthase - Prom 9170 - 9229 5.3 - Term 9209 - 9253 1.3 10 3 Op 1 . - CDS 9291 - 9455 163 ## 11 3 Op 2 1/0.000 - CDS 9518 - 10297 766 ## COG1352 Methylase of chemotaxis methyl-accepting proteins - Prom 10348 - 10407 2.9 - Term 10358 - 10406 13.1 12 4 Op 1 4/0.000 - CDS 10417 - 10860 490 ## COG0105 Nucleoside diphosphate kinase - Prom 10892 - 10951 1.6 13 4 Op 2 1/0.000 - CDS 10985 - 11959 903 ## COG0142 Geranylgeranyl pyrophosphate synthase 14 4 Op 3 1/0.000 - CDS 11956 - 12819 724 ## COG1427 Predicted periplasmic solute-binding protein 15 4 Op 4 3/0.000 - CDS 12779 - 13414 562 ## COG0163 3-polyprenyl-4-hydroxybenzoate decarboxylase 16 4 Op 5 1/0.000 - CDS 13411 - 14295 850 ## COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases 17 4 Op 6 . - CDS 14276 - 15025 428 ## PROTEIN SUPPORTED gi|163754278|ref|ZP_02161401.1| 30S ribosomal protein S15 18 4 Op 7 . - CDS 15040 - 15903 688 ## Pjdr2_2406 hypothetical protein 19 4 Op 8 . - CDS 15986 - 16519 481 ## gi|322381814|ref|ZP_08055768.1| hypothetical protein PL1_0520 - Term 16555 - 16581 1.0 20 4 Op 9 . - CDS 16591 - 16812 319 ## Btus_1762 tryptophan RNA-binding attenuator protein - Prom 16832 - 16891 2.0 21 5 Tu 1 . - CDS 16899 - 18191 969 ## COG2133 Glucose/sorbosone dehydrogenases - TRNA 18365 - 18441 74.9 # Pro GGG 0 0 - Term 18496 - 18537 8.6 22 6 Tu 1 . - CDS 18565 - 18837 193 ## PROTEIN SUPPORTED gi|148826039|ref|YP_001290792.1| 50S ribosomal protein L35 - Prom 18971 - 19030 5.7 - Term 19067 - 19102 2.6 23 7 Tu 1 . - CDS 19119 - 20597 1538 ## PPSC2_c3132 stage IV sporulation protein A - Prom 20707 - 20766 3.3 - Term 20793 - 20833 8.2 24 8 Op 1 . - CDS 20887 - 21642 774 ## Pjdr2_2398 hypothetical protein 25 8 Op 2 . - CDS 21688 - 22041 455 ## COG3894 Uncharacterized metal-binding protein 26 9 Op 1 . - CDS 22161 - 22796 472 ## PPSC2_c3136 protein 27 9 Op 2 . - CDS 22807 - 23100 310 ## GYMC10_3926 ferredoxin - Prom 23141 - 23200 5.7 - Term 23177 - 23223 1.2 28 10 Op 1 . - CDS 23250 - 23522 329 ## PPSC2_c3139 protein 29 10 Op 2 1/0.000 - CDS 23611 - 24651 1170 ## COG0240 Glycerol-3-phosphate dehydrogenase 30 10 Op 3 2/0.000 - CDS 24687 - 25283 546 ## COG0344 Predicted membrane protein 31 10 Op 4 . - CDS 25296 - 26618 1338 ## COG1160 Predicted GTPases 32 11 Op 1 . - CDS 26724 - 26906 171 ## 33 11 Op 2 . - CDS 26910 - 27395 524 ## Pjdr2_2388 spore envelope assembly protein Predicted protein(s) >gi|333608281|gb|AFDH01000022.1| GENE 1 2 - 604 397 201 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149916131|ref|ZP_01904653.1| 50S ribosomal protein L25/general stress protein Ctc [Roseobacter sp. AzwK-3b] # 1 201 1 202 263 157 39 7e-38 MNRIDRKFAELKSAGKNALIPFITVGDPTADVTLDIIRELEKSGADLLELGVPYSDPLAD GPVIQESSGRALKSGITVLKVIEIAKQARSEGSELPMILFTYYNPLLRIGLERVFELMKE SDISGVIIPDLPMEEDAEAKQLAERHGIHLIPLIAPTSNERVQKIVGRASGFVYCVSSMG VTGVRSEFHAGVDDFLASVKA >gi|333608281|gb|AFDH01000022.1| GENE 2 591 - 1799 1081 402 aa, chain - ## HITS:1 COG:lin1669 KEGG:ns NR:ns ## COG: lin1669 COG0133 # Protein_GI_number: 16800737 # Func_class: E Amino acid transport and metabolism # Function: Tryptophan synthase beta chain # Organism: Listeria innocua # 1 400 1 400 400 533 64.0 1e-151 MAAAVPDEHGRFGRFGGKYVPETLMNALIELEEAYRKYSQDPEFIKEVETLLHDYSGRPT RLYHAQRLTEKLGGAKIYLKREDLNHTGAHKINNTIGQALLAKRMGKKKVIAETGAGQHG VATATVAALLGLECKVFMGEEDMKRQQLNVFRMRLLGTEVVPVLSGTRTLKDACNETLRY WVSNVHDTYYILGSVTGPHPYPMIVRDFQRVIGDETRSQILELEGRLPDTVIACVGGGSN AMGMFYPFVGDESVRLIATEAAGRGVDTEEHAATMAKGSPGVFQGSLSYVLQDEFGQVIP AHSISAGLDYPGVGPEHAYLKDLKRAEYVPITDAEALDALQLLCKTEGIIPALESAHAVA QAIKTAPTMSPDELLVICLSGRGDKDVEAIMGYLGGADHESH >gi|333608281|gb|AFDH01000022.1| GENE 3 1799 - 2374 361 191 aa, chain - ## HITS:1 COG:CAC3159 KEGG:ns NR:ns ## COG: CAC3159 COG0135 # Protein_GI_number: 15896407 # Func_class: E Amino acid transport and metabolism # Function: Phosphoribosylanthranilate isomerase # Organism: Clostridium acetobutylicum # 17 189 54 201 205 102 39.0 5e-22 MISFLHERSRQGHRVPKTVGVFVNPTREELADVLSVAKLDIIQFHGEEAPETCRSIKEQF GVELWKVSSIKNEEPPVNESSFSDIKDGVNGWIQRLDPYRDAVDAVLIDTFDPVYGGGSG RTFSWNCIPAARKWALSAGMPLIVAGGLNPDNVGDLIEQYEIDGVDVSSGVETDGVKDIA KIAAFVERVTG >gi|333608281|gb|AFDH01000022.1| GENE 4 2619 - 3422 848 267 aa, chain - ## HITS:1 COG:XF0213 KEGG:ns NR:ns ## COG: XF0213 COG0134 # Protein_GI_number: 15836818 # Func_class: E Amino acid transport and metabolism # Function: Indole-3-glycerol phosphate synthase # Organism: Xylella fastidiosa 9a5c # 3 257 5 260 264 223 48.0 2e-58 MFLDKIVTTKRREVEELRGQVSSSELERRISGLQACRGFERALRDGRNRPTGLITEVKKA SPSKGLIRADFDPVQLASAYAEAGTDCISVLTDKDYFQGANDYLSAVREAVNVPLLRKDF TIDPLQVLEARVIGADAVLLIAAILKPSELKELKQLAQDVGLDVLVEVHDRRELETVLEQ DATLVGINNRNLKTFVTDIKTTEELAAIVPDDRILVSESGISSRDDLDFVRKAGARAVLI GEHFMRQPDVGQAVHDLMGERSITRNF >gi|333608281|gb|AFDH01000022.1| GENE 5 3412 - 4452 1123 346 aa, chain - ## HITS:1 COG:MJ0234 KEGG:ns NR:ns ## COG: MJ0234 COG0547 # Protein_GI_number: 15668409 # Func_class: E Amino acid transport and metabolism # Function: Anthranilate phosphoribosyltransferase # Organism: Methanococcus jannaschii # 7 338 2 332 336 298 48.0 8e-81 MAANGTIQRAISTLIGGGNLSRDEAREVMLSVMDGEATPAQIGSVMTAMRIKGETIEEVT GFAEAMRLKATSVQTIQDNLLDTCGTGGDGAGTFNISTASAIVAAAGGIRVAKHGNRAMS SSSGSADVLEALGVNIELDGGQAAECLDQIGICFMYAQRYHQSMKHAAGPRRELGVRTVF NLLGPLTNPAGADRQVLGVFERGKTELVAEVLGALGLKRAVVVSSYDGLDEISISAPTQV TELKNGTVNTYTVTPDDLGLQTYSLQDIQGGNAAENAEIIRTIFTGATGAHREIVLANAG ACFYVTGIAGTLQEGVKVAADVIDSGKAMEKLQQLAHYTGDLSYVS >gi|333608281|gb|AFDH01000022.1| GENE 6 4562 - 6106 1375 514 aa, chain - ## HITS:1 COG:aq_582 KEGG:ns NR:ns ## COG: aq_582 COG0147 # Protein_GI_number: 15606032 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Anthranilate/para-aminobenzoate synthases component I # Organism: Aquifex aeolicus # 1 493 3 489 494 444 48.0 1e-124 MNTELQEVIRLGKEYNLIPIVRCLLADTETPIRVFQHVADEKRAFLLESVEGGIKWARYS FIGTDPFLIIRARDGKTHLETQGRTITTEEKPLEALKSQLALFRSPSIEGLPRFTGGAVG FFGYDLLQYYENLPKHRVDDIQMDDIQFMFCDQVIAFDHFKQQMNVIANVHIPEGASEET IAEAYRQTCQKLDATIQKLKKPLPSTMMTHSEVETTTDLSGFRSNLSKEQYVSNVKAAQE YIKAGDIFQVVLSQRFETDTDVSPLQVYRVLRTLNPSPYMYYLKMDDEVIVGTSPEMLVR VEDERVDTRAIAGTRPRGKTPEHDLELEQDLLADQKERAEHLMLVDLVRNDVGRVAEYGT VSCDSFMQIERYSHVMHIVSNVSGTMNKEKDFFDAFLSCLPAGTVSGAPKLRAMEIIAEF ENERRGTYAGAIGYLGFSGNMDSAITIRTIVFKNGKAYIQAGAGVVFDSDPVKEYEETVN KARGMMTAIRTAEAMFKRAADNPNLDYYVHVPAL >gi|333608281|gb|AFDH01000022.1| GENE 7 6456 - 6833 423 125 aa, chain - ## HITS:1 COG:BH1658 KEGG:ns NR:ns ## COG: BH1658 COG4401 # Protein_GI_number: 15614221 # Func_class: E Amino acid transport and metabolism # Function: Chorismate mutase # Organism: Bacillus halodurans # 1 119 1 119 125 130 54.0 6e-31 MFVRGIRGATTVESNEEGQILAATLELLEKIVRENDVKPDEISSVFITVTKELTATFPAR AIRQMPGWDLVPLMCSIEIDVDNSLPKCIRLMVLANTTKRQDEMRHVYLKGAQVLRPDIV KLTNP >gi|333608281|gb|AFDH01000022.1| GENE 8 6836 - 7930 1060 364 aa, chain - ## HITS:1 COG:STM3486 KEGG:ns NR:ns ## COG: STM3486 COG0337 # Protein_GI_number: 16766774 # Func_class: E Amino acid transport and metabolism # Function: 3-dehydroquinate synthetase # Organism: Salmonella typhimurium LT2 # 1 353 1 352 362 305 46.0 6e-83 MMELKVDLGERSYPIYLGEGLLKDCAAYFDKHAISKRAPLLIVTDESVARHHLQPVMDSL TAGGYKASSFIVPPGEGSKSLQMLEQIVTAALEAGLDRKSTIVALGGGVVGDLAGFAAAS FMRGIAFVQMPTTILAHDSSVGGKVAVNHPLAKNIIGAFHQPEMVLYDVTTLQTLPKRDI SAGLSEMIKHGLIWDADFVTWLENNREKLLSLDPEALQYGLYQGCKVKSLVVSQDERENG LRAILNLGHTIGHALEAVAGYNELLHGEAISIGMVGSARLAVKLGYSEDIYTVTKRILQS FGLPVRLPEQYDTARIMSALMHDKKFKEGTMTFIIPTAVGQVEIRSDVRREWVEEVVEQL KREA >gi|333608281|gb|AFDH01000022.1| GENE 9 7932 - 9095 1138 387 aa, chain - ## HITS:1 COG:BS_aroF KEGG:ns NR:ns ## COG: BS_aroF COG0082 # Protein_GI_number: 16079328 # Func_class: E Amino acid transport and metabolism # Function: Chorismate synthase # Organism: Bacillus subtilis # 1 350 1 353 368 463 67.0 1e-130 MRYLTAGETHGPQLTAIIEGFPSNVTIDFEAMNFQLHRRQKGHGRGRRMQIEKDTASIVG GVRHGRTTGAPIALVVENNDWKHWTSIMNIEEQPDTDEGKRRVNRPRPGHADLNGGLKYN QRDLRNILERSSARETTMRVACGAVARQLLEAFGIKLASHVVRIGEVEAKSPQLPIDELI AITEESPVRVTDPEAEAAMIAAIDAAKADGDTLGGIVEVIVEGAPVGLGSHVQWDRKLDG RIAQAVLSIQAFKGCEIGIGFEAAKLRGSSVHDEIQYDPEKGFRRASNRAGGFEGGMTTG EPIVVRGVMKPISTLYKPLQSVDIDSKEAFTAQVERSDTCAVPAAGVIMENVVAWEVAQA FMEKFGGDSLEEIRRNYENYLKQVESY >gi|333608281|gb|AFDH01000022.1| GENE 10 9291 - 9455 163 54 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MDKRKVIAAYHRGFITMQECAQILGIDSVQILGMMNDPKMAGPSGPWQKQSAGG >gi|333608281|gb|AFDH01000022.1| GENE 11 9518 - 10297 766 259 aa, chain - ## HITS:1 COG:BH1655 KEGG:ns NR:ns ## COG: BH1655 COG1352 # Protein_GI_number: 15614218 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Methylase of chemotaxis methyl-accepting proteins # Organism: Bacillus halodurans # 4 257 3 256 257 297 59.0 1e-80 MENDDFPLFIRKIKDFTSIDLALYKEAQMKRRLTTLRIKKGYNTFSAYFDAMSKDKELFY EFLDRMTINVSEFWRNPNRWEVMEQKFLPELRNASRNLKVWSAACSTGEEPYTLAMILSH MGALRDASILATDIDEGALEKARRGIYVERSLKDVPTHYVKTYFKQEQLGFHVTDELKKA VKFQKQNLLEDRFDSGFDLIVCRNVIIYFTEEAKHRLYQKFSKALKPGGILFVGSTEQIF SPAQYDLEPADTFFYRKKG >gi|333608281|gb|AFDH01000022.1| GENE 12 10417 - 10860 490 147 aa, chain - ## HITS:1 COG:BH1654 KEGG:ns NR:ns ## COG: BH1654 COG0105 # Protein_GI_number: 15614217 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside diphosphate kinase # Organism: Bacillus halodurans # 1 147 1 147 147 198 63.0 3e-51 MEKTFLMVKPDGVQRGLIGEIVKRLEQKGFQLVAAKLMLMTREQAEEHYAEHKGKDFFEP LVEFITSGPVFAMVWQGEQVIALSRILNGKTNVLEAAPGTIRGDFALHTRLNLIHGSDSP ESAEREINHFFKPEEILDYKRDVSRWL >gi|333608281|gb|AFDH01000022.1| GENE 13 10985 - 11959 903 324 aa, chain - ## HITS:1 COG:BH1653 KEGG:ns NR:ns ## COG: BH1653 COG0142 # Protein_GI_number: 15614216 # Func_class: H Coenzyme transport and metabolism # Function: Geranylgeranyl pyrophosphate synthase # Organism: Bacillus halodurans # 1 322 1 321 323 342 53.0 4e-94 MKILNIYVRKKKDVGAIERELEVSLQTDHALLTETSMHLLKAGGKRIRPVLVLLGGEFGT YDIERLKMIAVPLELFHSASLVHDDVIDDADTRRGQDTVKSRWDNRIAMYTGDFIFAKGL EIAARLEDPRVHLILSKALVEMSIGEMEQIRFFFHTEQTLRDYLLRIKRKTALLIAISCQ LGAMVAGADEYVSNRLYSFGYNVGLAFQIRDDILDLCGTEKEIGKPPGSDIKQGNITLPV IFALQEEKLRGPILSEIERIQQADGQTDVSRVLDMIRGSGGIEKSSALADRYIAKAIAAL DTLPNIRAKQDLIQVAHFIGNRTH >gi|333608281|gb|AFDH01000022.1| GENE 14 11956 - 12819 724 287 aa, chain - ## HITS:1 COG:BH1652 KEGG:ns NR:ns ## COG: BH1652 COG1427 # Protein_GI_number: 15614215 # Func_class: R General function prediction only # Function: Predicted periplasmic solute-binding protein # Organism: Bacillus halodurans # 8 279 3 278 287 231 44.0 2e-60 MTTTEKKLRIGRIEFTNAWPVFYHFPVQKLANSVEFVSQVPTGLNRALAAGEIDMSAISS FSYGENFRDYVLFPDLSVSAYGYVNSLLLFHKKPLDQLKNGRFALPTTSATTTNLLKIIM NKKYGGNPTYSYAPPVLEDMMKDNDAALLIGDHAIKASWQGSGYMVTDLGQEWKEWTGHW MSFAVWAVRKDTIERSPELVKRIFDGFVESKRKSLDDLTGVVNEAVLKIGGSESYWEHYF RNLCYEFGPEQWSGLELYYRYAWELGFLPEEVSIQIWSDNTRVRVTE >gi|333608281|gb|AFDH01000022.1| GENE 15 12779 - 13414 562 211 aa, chain - ## HITS:1 COG:BH1651 KEGG:ns NR:ns ## COG: BH1651 COG0163 # Protein_GI_number: 15614214 # Func_class: H Coenzyme transport and metabolism # Function: 3-polyprenyl-4-hydroxybenzoate decarboxylase # Organism: Bacillus halodurans # 6 202 8 204 206 243 57.0 2e-64 MKKRGWVVGITGASGAIYGVTLVKELLKRGVPVHLVITDAGWRVLHEELDWVAAKRKETL EAHFGGFPGPYTYYPLQDIGAGIASGSFRTEGMVVMPCSMGTLAGISRGASDNLLERAAD VMLKEGRRLILVPRETPLHAIHLENMLVLAKMGVKLIPAMPAFYQRPETLEDIVAFLVGK VLDNMDLDHELFRRWGESNDDNREETAHREN >gi|333608281|gb|AFDH01000022.1| GENE 16 13411 - 14295 850 294 aa, chain - ## HITS:1 COG:BH1650 KEGG:ns NR:ns ## COG: BH1650 COG0382 # Protein_GI_number: 15614213 # Func_class: H Coenzyme transport and metabolism # Function: 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases # Organism: Bacillus halodurans # 14 290 1 277 277 324 64.0 1e-88 MRQLIHKTKIFLEMIKFEHSLFALPFAYMGSILGAVVETGHLPTWTQIMWITLAMIGART AAMSLNRVIDKKYDKKNPRTANRAIPAGLISVAEVTIFIILSFLLLFWSAYHLNMLSVYL LPVAAFFLVFYSYTKRFTWACHFVLGITLGLAPLGGWVAITGGITPAALVLFITVAMWSA GFDLLYACQDVEFDREEGLHSYPSRFGIPTALITARVLHTLTAVGLISLFFMTNLSWWYL VGIIIAYIILFYEHRLVSPTDLSKLNTAFFTMNGILSTVVFVFTLVDILVETFR >gi|333608281|gb|AFDH01000022.1| GENE 17 14276 - 15025 428 249 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163754278|ref|ZP_02161401.1| 30S ribosomal protein S15 [Kordia algicida OT-1] # 13 234 1 221 221 169 39 2e-41 MQGKTKEQFVHSVFESIAPKYDKMNSILSFRRHKAWRKFTMAKMNVKPGSTAIDICCGTC DWTISMAKASGTGQMVGLDFSQNMLDYGAGKIREERLDNQIRLVHGNAMSLPFDDNTFDY ATIGFALRNVPDVEQVLREMQRVVKPGGLVVSLELSKPTWRPFKALYYFYFQKVLPVLGK LIAKSYEQYRWLPESLISFPDYKELAEIFRQTGLQKVEAYPLTFGIAALHIGVKGNSSQE SKTDATTHS >gi|333608281|gb|AFDH01000022.1| GENE 18 15040 - 15903 688 287 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_2406 NR:ns ## KEGG: Pjdr2_2406 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: Terpenoid backbone biosynthesis [PATH:pjd00900]; Biosynthesis of secondary metabolites [PATH:pjd01110] # 1 275 1 274 283 233 44.0 1e-59 MNPYRIPEIAKQYTDYDMIRQHTDLPDFPNFRAQLLYAFLSRDSRLNPSSELFALVTSLV QMGLDTHDEVTVSNEVKEKKAARSRQLKVLAGDYFSSRFYHLLSQAGQIELIKRLSTAIC ELNRLKTNLYVTMKHLKVTAEDYVRQSVDIKSHLFKSFGGLMEEVNRRAWPEILEAFTRC EVIFKEIFRSESLQDFHESWGYWHIIQNGSKEERKLLEAEEQDPAKLKALIHKYNVPSQL YNLLAAQLQQLEAKVKQLDSDKLASELFHIGEPFFRFISKTRILEER >gi|333608281|gb|AFDH01000022.1| GENE 19 15986 - 16519 481 177 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|322381814|ref|ZP_08055768.1| ## NR: gi|322381814|ref|ZP_08055768.1| hypothetical protein PL1_0520 [Paenibacillus larvae subsp. larvae B-3650] hypothetical protein PL1_0520 [Paenibacillus larvae subsp. larvae B-3650] # 19 175 19 177 180 107 38.0 3e-22 MNKIARLLTIGGLSAAVVLTMAFVPFLDRKNSGQGSEAWRSISGPELTEANLPDYVNGLP LQLRVRKVELTHSILSLDLLLPGTAEKKVVYGDLLRIAQSSLLRTSNISRVLVRIVEYGA KPGENGPELVMAMEAARTEAKALSSLKGTDGEDKVAAELQRRFLLTFTKKWQRHFPE >gi|333608281|gb|AFDH01000022.1| GENE 20 16591 - 16812 319 73 aa, chain - ## HITS:1 COG:no KEGG:Btus_1762 NR:ns ## KEGG: Btus_1762 # Name: not_defined # Def: tryptophan RNA-binding attenuator protein # Organism: B.tusciae # Pathway: not_defined # 6 70 12 76 81 102 81.0 6e-21 MDQTQGDYFIIKAKENGVHVIGLTRGHDTRFHHTEKLDKGEVMIAQFTEHTSAVKVRGKA LIMTKFGNIETEQ >gi|333608281|gb|AFDH01000022.1| GENE 21 16899 - 18191 969 430 aa, chain - ## HITS:1 COG:PAE2689 KEGG:ns NR:ns ## COG: PAE2689 COG2133 # Protein_GI_number: 18313519 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose/sorbosone dehydrogenases # Organism: Pyrobaculum aerophilum # 82 422 41 365 371 260 43.0 3e-69 MRQNGQTRVKFALFTAAAAIAVMTSGCEGKPASTGGTGSGPAGTEAPGPTDAGQARGSGF GNAPVVPELIEQKAADYTREIVASGLNVPWELVFAPDGRIFFTERPGQLRMIRDGNLQEK PLLKLQDPFISSGEGGLLGLALDPDFAANSYLYVYHTYAGEGETKNRVLRLKLQGDEALI DRVLLDGIPGAENHNGGRIKFGPDNMLYVTTGEKYDPPLAQDKNSLGGKILRIKPDGSIP EDNPFQGSPVYSWGHRNAQGLAWDPRSGALLSSEHGQSAHDELNVIVPGGNYGWPLIEGD ETGSPKAAGPLIPPLLHSGKDTWAPSGMTFIRQGPWQGRLAVAGLRGTKLLLFSLEPDRT SAPGAAASVPVYKLTKAEAAFAGIFGRLRSVTEGPDGSLYLLTNNRDGRGKPAGDDDKII RLKPKRSGAE >gi|333608281|gb|AFDH01000022.1| GENE 22 18565 - 18837 193 90 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148826039|ref|YP_001290792.1| 50S ribosomal protein L35 [Haemophilus influenzae PittEE] # 1 90 4 93 96 79 40 3e-14 MNKSELIAKVSETSELSKKDATKAVDAVFDAISEALQQGDKVQLVGFGNFEVRERSARKG RNPQTGDEIEIPASKIPAFKPGKALRDGIQ >gi|333608281|gb|AFDH01000022.1| GENE 23 19119 - 20597 1538 492 aa, chain - ## HITS:1 COG:no KEGG:PPSC2_c3132 NR:ns ## KEGG: PPSC2_c3132 # Name: not_defined # Def: stage IV sporulation protein A # Organism: P.polymyxa_SC2 # Pathway: not_defined # 1 492 1 492 492 855 87.0 0 MEKVDIFKDIAERTGGDIYLGVVGAVRTGKSTFIKRFVESVVLPNIQSETDRIRATDELP QSAAGRTIMTTEPKFVPNNAVQISVAEGLNVNVRLVDCVGYAVEGAKGYEDENGPRMIST PWFDEPIPFQEAAEIGTRKVIQEHSTLGVVVTTDGTISDIPRSSYVLAEERVIAELKEVG KPFIVVINSQKPNSEPAQELRSELQSKYDIPVVTMSVATAGEDEMIGVLREVLYEFPVHE VNVNLPSWVMVLPEKHWLRTHFENSVRDTVQDIRRLRDVERVVGQFSEYEFIDRAALAGM NMGQGVAEIDLYAPDELYDKILVEVVGVEIRGKDHLLQLMQEFTHAKREYDQFAEALEMV KTTGYGIAPPTLAEMALDEPELIRQGSRFGVRLKATAPSIHMIRVDVESEFSPIIGTEKQ SEELVRYLMQDFEDNPLKIWESDIFGRSLHSIVREGIQGKLAMMPDNARYKLQETLGRII NEGSGGLIAIIL >gi|333608281|gb|AFDH01000022.1| GENE 24 20887 - 21642 774 251 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_2398 NR:ns ## KEGG: Pjdr2_2398 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 9 239 13 241 254 176 37.0 1e-42 MTIVKGALAGRLTVLMAALFSLALLGGCMYPKEMRKENQTNPGEFIAVVQQSIDEYHTKK SVFPIKNSDMETPIYEKYVIDFQKLKNSGYLSNLPGNAYESGGDFIYVLVDPDTKAKVKL FDLVAYRTTADIQKKINDYISKNNGAVPGGETYSPGFRYVDFGKIGMKTPEIKSVYNRQS LINFLVHDSGKVAIDYAPDLAQKIRDKQLQAALKDGQNLLPLLVEDSYFVPIMSFEYKWD SASSKPVPVMK >gi|333608281|gb|AFDH01000022.1| GENE 25 21688 - 22041 455 117 aa, chain - ## HITS:1 COG:SMc04347 KEGG:ns NR:ns ## COG: SMc04347 COG3894 # Protein_GI_number: 15965741 # Func_class: R General function prediction only # Function: Uncharacterized metal-binding protein # Organism: Sinorhizobium meliloti # 3 114 10 130 683 59 29.0 1e-09 MSQTNPKVTFMPDNLSASVRLNTTLLDAARRANVHIRTRCSGQAACLMCKVHAGDQSGLA EPGKNERLKLGSQLQEGLRLSCQARITGDVTVTVPEDPLKAAVRAQLAKQREEDDWP >gi|333608281|gb|AFDH01000022.1| GENE 26 22161 - 22796 472 211 aa, chain - ## HITS:1 COG:no KEGG:PPSC2_c3136 NR:ns ## KEGG: PPSC2_c3136 # Name: not_defined # Def: protein # Organism: P.polymyxa_SC2 # Pathway: not_defined # 43 209 36 202 216 143 46.0 5e-33 MKSERSKERRIALEMRRDFPLEESLVEVMRQAARLLNGTGTGWLIGGSCGLALQGVEIGA QPRDLDLYVDTDQASAAARILQPYAIDEQKLDRTGIYESLLSHYAIGGIQVELVGGFKVC AAGSQYIVEAAYLREKHAEVRQLEGESLALMPLAHELLFNILRERPDRYEAIARTINGCP SRHEAALTDLLSRNSWGEPALSVVKRLIPGL >gi|333608281|gb|AFDH01000022.1| GENE 27 22807 - 23100 310 97 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_3926 NR:ns ## KEGG: GYMC10_3926 # Name: not_defined # Def: ferredoxin # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 97 33 129 129 100 51.0 2e-20 MITLRTRKGDKTVESETGLTVLELALKHKLEWGHSCKRGTCARCRCFVKEGRERLAPPTE AELDRLEPEEIDLGYRLGCQAVIQETGDVSVTHKPYF >gi|333608281|gb|AFDH01000022.1| GENE 28 23250 - 23522 329 90 aa, chain - ## HITS:1 COG:no KEGG:PPSC2_c3139 NR:ns ## KEGG: PPSC2_c3139 # Name: not_defined # Def: protein # Organism: P.polymyxa_SC2 # Pathway: not_defined # 5 90 6 91 91 71 54.0 1e-11 MPKNPKDILNAVKKKTGKSVTEKDIQKLASGVKPSTVQDEAQLRQLIKQVSQLVGINVPE ETVKDIVHAVKSSKLDGNNMQQMMNLIMKK >gi|333608281|gb|AFDH01000022.1| GENE 29 23611 - 24651 1170 346 aa, chain - ## HITS:1 COG:BS_gpsA KEGG:ns NR:ns ## COG: BS_gpsA COG0240 # Protein_GI_number: 16079340 # Func_class: C Energy production and conversion # Function: Glycerol-3-phosphate dehydrogenase # Organism: Bacillus subtilis # 3 339 2 338 345 378 56.0 1e-104 MTKHVSVLVAGSWGTALASVLAANDLDVTIWTRNAGQAEEINTLHTNSRYLQDIALSPRI RATTSIREAVENKDAVVFVVPSAGMREVASQVREFLSPDTLVIHATKGFESLTLKRMTTV LAEELPQCDPGRIVVLSGPSHAEEVIRECPTTVVVASPTVEAAEAAQDLFINSYFRVYTN PDVTGVEVGGALKNIIALGAGLSDGLRFGDNAKAALLTRGLAEIARLGAEMGANPMTFAG LAGIGDLVVTCTSTHSRNWKAGYLLGQGEPLDQVLNKMGMVVEGVKTTKSAYALAQEYGV TMPITNELHHVLFEGKAPRAAVEDLMGRGRTHEIEEVANQTDKWIL >gi|333608281|gb|AFDH01000022.1| GENE 30 24687 - 25283 546 198 aa, chain - ## HITS:1 COG:BH1639 KEGG:ns NR:ns ## COG: BH1639 COG0344 # Protein_GI_number: 15614202 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Bacillus halodurans # 8 197 9 203 206 176 56.0 3e-44 MIYIIPAVAAYLLGSLSFSFIIGKMVKGIDIRAHGSGNAGATNTLRVLGKGPAVLVLALD VVKAILAVWIGKWMAPDLIWVHVACGLAVIIGHNWPVFFGFRGGKGVATAIGVTATLCFL PALFAGIIAIASIFLTRYVSLGSLLFTAFLPFFVWGMGRPVEILWGVIVIGVFTFWRHRT NISKLVQGRENKIGSKKA >gi|333608281|gb|AFDH01000022.1| GENE 31 25296 - 26618 1338 440 aa, chain - ## HITS:1 COG:BH1638 KEGG:ns NR:ns ## COG: BH1638 COG1160 # Protein_GI_number: 15614201 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Bacillus halodurans # 1 438 1 437 437 632 70.0 0 MARPILAIVGRPNVGKSTIFNRIIGDRLAIVEDKPGVTRDRLYGIGEWLDREFSVIDTGG IEVEGEDQIMKSVRVQAELAIEEADVIIFMVDAKAGVTSADQEVAQLLFRSRKPVVLAVN KVDNIQRQDEIYEFYSLGFGDPIGISGAHGIGIGDMLEAAAAHFPDHPDEEYGEEVIKVA LIGRPNVGKSSLVNAILGEDRVIVSDQAGTTRDAIDTPFELDDQKYVIIDTAGMRKRGKV YENTEKYSVMRAMKAIERADVVLVVINGEEGIIEQDKHIAGYAHEAGKAAIFVVNKWDVV EKDDKTMHQFTQKIRDHFLFMTYAPVLYVSARTTQRVQKLLPMVNQVAEQHTMRVQTHVL NDVVSDAVMFNPPPTDKGKRLRINYATQVSVKPPTFVFFVNEPDMMHFSYERYLENKIRG AFGFEGTPIRLFTRRKSDDE >gi|333608281|gb|AFDH01000022.1| GENE 32 26724 - 26906 171 60 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MATIKAVAVVEGVKVDGGAPIFYAKDEAELQQLAFNLEKILDVNAHVLKPGTFILVDHKG >gi|333608281|gb|AFDH01000022.1| GENE 33 26910 - 27395 524 161 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_2388 NR:ns ## KEGG: Pjdr2_2388 # Name: not_defined # Def: spore envelope assembly protein # Organism: Paenibacillus # Pathway: not_defined # 1 161 142 300 304 183 55.0 2e-45 GAAAGLAAVGVSIYFKTGKNMTHIADIGISEVRLDGPNLYVGDIYIMNVGLESDRELIAR QGVGLLAVPKNPDARVTLANLGQRQAILHDISTVLGVYRDSGEPALMPMAKLHLDSGTLG VFVLPQVKDPQKAAAALKRVPVLESAIRMPTESAAGPHKEA Prediction of potential genes in microbial genomes Time: Sun Jul 17 07:55:30 2011 Seq name: gi|333608270|gb|AFDH01000023.1| Paenibacillus sp. HGF7 contig00102, whole genome shotgun sequence Length of sequence - 11462 bp Number of predicted genes - 10, with homology - 10 Number of transcription units - 1, operones - 1 average op.length - 10.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 12/0.000 - CDS 3 - 536 318 ## PROTEIN SUPPORTED gi|163762565|ref|ZP_02169630.1| ribosomal protein S2 2 1 Op 2 1/0.000 - CDS 623 - 1558 781 ## COG0130 Pseudouridine synthase 3 1 Op 3 4/0.000 - CDS 1555 - 2568 675 ## COG0618 Exopolyphosphatase-related proteins 4 1 Op 4 32/0.000 - CDS 2565 - 2921 435 ## COG0858 Ribosome-binding factor A 5 1 Op 5 10/0.000 - CDS 2928 - 5666 2160 ## COG0532 Translation initiation factor 2 (IF-2; GTPase) 6 1 Op 6 8/0.000 - CDS 5686 - 6012 271 ## PROTEIN SUPPORTED gi|229544435|ref|ZP_04433493.1| ribosomal protein L7Ae/L30e/S12e/Gadd45 7 1 Op 7 22/0.000 - CDS 5978 - 6289 275 ## COG2740 Predicted nucleic-acid-binding protein implicated in transcription termination 8 1 Op 8 32/0.000 - CDS 6316 - 7413 785 ## PROTEIN SUPPORTED gi|17988250|ref|NP_540884.1| transcription elongation factor NusA 9 1 Op 9 4/0.000 - CDS 7462 - 7920 391 ## COG0779 Uncharacterized protein conserved in bacteria - Prom 8040 - 8099 6.3 - Term 8048 - 8112 5.3 10 1 Op 10 . - CDS 8124 - 11453 3123 ## COG2176 DNA polymerase III, alpha subunit (gram-positive type) Predicted protein(s) >gi|333608270|gb|AFDH01000023.1| GENE 1 3 - 536 318 178 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762565|ref|ZP_02169630.1| ribosomal protein S2 [Bacillus selenitireducens MLS10] # 1 178 1 176 317 127 40 5e-29 MQTIHLSYPIENAELLPLAGKKVIAIGDFDGVHLGHREVIQRAVENARELGVPAAIMTFD PHPRELLGQEKYARLLTPTSYKMELFEKLGVDCTYVLKFDTALMQASPQQFVDRVLEALG VETVVVGFDFTFGYKGRGTPDTLCELGHGRFAVEVIRPYRMNGAKVSSTAIREALLTG >gi|333608270|gb|AFDH01000023.1| GENE 2 623 - 1558 781 311 aa, chain - ## HITS:1 COG:BH2410 KEGG:ns NR:ns ## COG: BH2410 COG0130 # Protein_GI_number: 15614973 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridine synthase # Organism: Bacillus halodurans # 1 248 1 250 304 243 50.0 4e-64 MTIEGILPILKPKGMTSHDVVAKARRFLGIKRIGHTGTLDPEVTGVLPLCIGRATRMVEY IQELPKQYEAAVVFGLATDTEDLSGNVLEEIPLVQLAEDKVRSVIQSFVGEISQVPPMYS AVKVDGKRLYELARAGVEVERKARNVTIYEIELLELDLNRDHPEVRFRVLCSKGTYIRTL CVDIGRALGVPAAMKELVRSSTGRIGLEQCVALEDLPRLREEGLLDTKIIQADQAVDYLP SLVLNEQLSVFALQGRKVRLHEAPALQGSRDSETGVEQTGIIRVYDPHKRFIGLFSWNET EGHLAPVKVFN >gi|333608270|gb|AFDH01000023.1| GENE 3 1555 - 2568 675 337 aa, chain - ## HITS:1 COG:aq_1630 KEGG:ns NR:ns ## COG: aq_1630 COG0618 # Protein_GI_number: 15606737 # Func_class: R General function prediction only # Function: Exopolyphosphatase-related proteins # Organism: Aquifex aeolicus # 33 336 20 318 325 189 35.0 6e-48 MTAGQFIGGGASGSYLEQLEAAKQFMHDHNDFLVVSHVQPDGDAISSTLAIAWLLDRMGK RYTLANEGDIPEKFSRLWGFDGIRTLSQLPDHLSYDTIISVDCADFSRIGRVSEKFTPDA KLLNIDHHATNDRFGECSVIQASAAATVEIIYDLSKCFQMEANIDFGTCIYTGLLTDTGG FRYSSTTPKVMQTAADLLEWGVKGSELAEAFLERMTFQQIRILQQGLATLDFHKNGRIST IAVSTEVIEATGATNEDMDGLVNYARNVEGVEVGLLFKQRNASAVKVSLRSAGAVDVAQI AQSFGGGGHVRAAGCTINGSIEEAIRRVVEEVGNKLP >gi|333608270|gb|AFDH01000023.1| GENE 4 2565 - 2921 435 118 aa, chain - ## HITS:1 COG:BH2411 KEGG:ns NR:ns ## COG: BH2411 COG0858 # Protein_GI_number: 15614974 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome-binding factor A # Organism: Bacillus halodurans # 1 112 1 112 116 146 68.0 1e-35 MARVRVGRVGEQVKKEISQILQSEIKDPRIGFLTVTGVDVTNDLSQAKVYLSVLGTDEQK EGTLKALSSASGYIRSELGKRIRLRKVPELIFKFDTSIDYGSRIESLLHDLNDGKSAE >gi|333608270|gb|AFDH01000023.1| GENE 5 2928 - 5666 2160 912 aa, chain - ## HITS:1 COG:BH2413 KEGG:ns NR:ns ## COG: BH2413 COG0532 # Protein_GI_number: 15614976 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation initiation factor 2 (IF-2; GTPase) # Organism: Bacillus halodurans # 233 912 48 729 730 775 63.0 0 MTNKQDPKDKLRVYEYAKSLNMSSKEIITILKRLNIPVNNHMSVMENNAVSSVEKFFRDI KANAAAKRAGSDGGNVSPNSNQPKQDNQSNPKAEVSAKQPVQQAGSEQAKKEERPAAQAR PQGSQDNRAPRPSGDGRTGAPRGDRPQGQGAPRSGGQGGGQRPQGGQGGYNRGPQSGGQG RPQGGQRPQGQGGAPRSGGQGGGGPRPQGGQGGGFNRGPQGGSGGQRPPGGGGQGGQNRG GSAGAGARPGQAPRRTDGRPAAGTDAGRGGQRTGDNRQGNRDDRSKSSRYDDGRGGRGGA GNRGGNNRGGRNNGRGRGQDMVKKEKIDNTPKKIIVRGAMTVGELAKLLHKDVSEVIKKL LFLGVMATINQELDLDTIQLVAGEYNVEVDLKIRVEDDRFELEEEVDDAADLKERPPVVT IMGHVDHGKTTLLDAIRHTSVTEGEAGGITQHIGAYQVEANGKKITFLDTPGHEAFTTMR ARGAQVTDITIIVVAADDGVMPQTVEAIAHAKAAGVPIIVAVNKIDKPEANVEKIKQALT EYELVPEEWGGDTIFCEVSAKQRIGLENLLEMILLVAEVQEYKANPDKRARGTVIEAELD KGRGPVARILVQHGTLKVGDSFVAGVCFGRVRAMVNDKGKRLKEAGPSTPVEITGLTEVP QAGDPLLAFEDERKARDIADKRAITLRQSELTANSRVTLDDLYKHIKDGEIKDLNVIIKA DVQGSLEALRGSLEKIEVEGVRVKMIHTGVGAITESDIILASASNAIIIGFNVRPEPAAQ VTADQEKVDIRLHRIIYNVIEEIEQAMKGMLDPIFKENIIGHAEVRNTFKITGVGTIAGC MVTSGKIARNAEVRLLRSNIVVYEGKVDALKRFKDDAKEVAQGYECGISLEKYNDIKEGD IIEAFVMETVER >gi|333608270|gb|AFDH01000023.1| GENE 6 5686 - 6012 271 108 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229544435|ref|ZP_04433493.1| ribosomal protein L7Ae/L30e/S12e/Gadd45 [Bacillus coagulans 36D1] # 9 103 1 95 102 108 58 1e-23 MRAKMGWTMTNKNYFSNLGLAMRAGKLVTGEESVLKAIRSGDAKLVIMAEDAADNTSKKF QDKCRSYDVPLLVLGNREELGSSIGKEARVTIAVVDDGFARMLKKYRV >gi|333608270|gb|AFDH01000023.1| GENE 7 5978 - 6289 275 103 aa, chain - ## HITS:1 COG:BH2415 KEGG:ns NR:ns ## COG: BH2415 COG2740 # Protein_GI_number: 15614978 # Func_class: K Transcription # Function: Predicted nucleic-acid-binding protein implicated in transcription termination # Organism: Bacillus halodurans # 1 83 1 83 91 90 59.0 5e-19 MKQRKIPLRKCVACQEMMPKKELIRVVRTPEGEIQIDLKGKKSGRGAYLCGKVACFRLAK KSKALDRALKQSVGAPIYDQLEQDFIQVEEEFHAGKDGMDDDE >gi|333608270|gb|AFDH01000023.1| GENE 8 6316 - 7413 785 365 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|17988250|ref|NP_540884.1| transcription elongation factor NusA [Brucella melitensis 16M] # 3 365 8 370 537 306 41 3e-83 MNMDFIEALAEIEREKGISKDLLIDAIEAAMISSYKRNFNTAQNVRVDINRQTGTIRVYA RKTVVEDVLDPRLEITLHAAREINQNYTMDDIVEIEVTPRDFGRIAAQTAKQVVTQRIRE AERGLIYNAFIEKEEDIVTGIVQRQDQRHYYIDLGKVEAVLPLTEVMPNEKFKQGERVKA YITKVENTTKGPQIILSRTHPGLLKRLFELEVPEIYEGVVEIKSVAREAGFRSKIAVHSR NTEVDPVGSCVGPKGLRVQTIVGELRGEKIDIVRWMESVEEYVANALSPSKVLEVNVFEN EKMARVIVPDYQLSLAIGIKGQNARLAAKLTGWKIDIKSEAQAEQEYGRPRSQIEEMHQD SVSFD >gi|333608270|gb|AFDH01000023.1| GENE 9 7462 - 7920 391 152 aa, chain - ## HITS:1 COG:BS_ylxS KEGG:ns NR:ns ## COG: BS_ylxS COG0779 # Protein_GI_number: 16078722 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 152 1 156 156 162 54.0 2e-40 MNSPIKSVVEDMLLDYFNEQGFELVDIEYVKEGSNWFLRVFVDKEGGIDIDDCGRISEFL SSKLDENDPIPTAYFLEVSSPGAERPLKKPEDIKKAVGKHVFVTTYEPIDNSKEFEGELL SFDDEELVVQTPKKRSAIPYSKVASARLAIVF >gi|333608270|gb|AFDH01000023.1| GENE 10 8124 - 11453 3123 1109 aa, chain - ## HITS:1 COG:BH2418 KEGG:ns NR:ns ## COG: BH2418 COG2176 # Protein_GI_number: 15614981 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit (gram-positive type) # Organism: Bacillus halodurans # 5 1109 329 1433 1433 1380 59.0 0 MDDAEEKRVEFHLHTTMSTMDGITPVDQYIKTAAKWGHKAIAITDHSGVQSYPDANKAGK KNGIKVIYGVEANVVNDSVPIVLNPIDADLKQATYVVFDIETTGLSVLNNKIIEIAGVKV QEGKEIDRYSTFIQPHEKIPYHIQQLTNITDEMVKDAPELADELPKFIDFIGDSVLVAHN ARFDIGFIQANLKRLGHPQMTNAVLDTLEMARLLFPSMKNHRLNTLSDKFKVSLENHHRA IDDTIALGHVLQHLINEAYDRNITNLGRMNDFVGKDLSNQRPFHCCIYATNAIGKKNLFK LISISHTEYFNKVATIPKSRLIELREGLLIASGCEKGEFFETVLNKSQEEAEQVSEFYDV LEIQPVSYNMHLVDRGLVGSRADLEDAVKRIVAIGAKQGKPVIATGNVHYLEPRDKVARD ITINGITGFSPLKDMKKPDAHFRTTREMLEEFRFLGQEKAHEVVVRNTNDLADRFEEIEL FPTKLFTPIIEGADDEIRNKCYETARQIYGDEVPEIVVQRLEKELVPIIKYGFSANYLIS ERLVKKSNEDGYLVGSRGSVGSSVVATFLGISEVNPLPPHYICRSCKFSEWFTDGSIPSG FDLPDKTCPTCGDKLKGEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPVAHNYTKVLFGE KSVFRAGTIGTIADKTAFGYVKKYEEGQGKKWRNAEIVRLASGCTGVKRSTGQHPGGIVV VPDYMEVDDITPVQFPADDKNSEWKTTHFDYHAFDANLLKLDILGHDDPTMMRMLQDLTG IDPTTIPMNDPKVMSIFHSTDALGVPPEKIRTPVATYGVPEMGTKFVRQMLQETHPSSFA DLLQISGLSHGTGVWLGNAQELIKKGICNIKTVIGCRDDIMLYLIYKAGMDAGLAFKITE SVRKGKGLTDEWKEDMKKHNVPAWYIESCERIEYMFPKAHAAAYVISAVRTAYFKVYHPI AYYATYFTVRAEDFDLELLCQGYDAIMKKLIEIEEKGFQALPKEKAMISILEMALEMTAR GFSFKPIDLYRSDATKFIIDGDSLIPPFSAVPGIGENAARNIAASKESGDFLSIEDFQNR SKASKTVVELLNGMGCFRGLPESNQLSLF Prediction of potential genes in microbial genomes Time: Sun Jul 17 07:55:31 2011 Seq name: gi|333608268|gb|AFDH01000024.1| Paenibacillus sp. HGF7 contig00120, whole genome shotgun sequence Length of sequence - 851 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Sun Jul 17 07:57:00 2011 Seq name: gi|333608009|gb|AFDH01000025.1| Paenibacillus sp. HGF7 contig00140, whole genome shotgun sequence Length of sequence - 279279 bp Number of predicted genes - 257, with homology - 219 Number of transcription units - 136, operones - 59 average op.length - 3.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 525 523 ## Pjdr2_3017 phytanoyl-CoA dioxygenase + Term 595 - 648 9.1 - Term 583 - 636 9.1 2 2 Op 1 . - CDS 726 - 1661 747 ## COG0451 Nucleoside-diphosphate-sugar epimerases 3 2 Op 2 . - CDS 1658 - 2761 672 ## SGR_5936 putative dTDP-dihydrostreptose--streptidine-6-phosphate dihydrostreptosyltransferase 4 2 Op 3 . - CDS 2758 - 4296 1106 ## COG2192 Predicted carbamoyl transferase, NodU family 5 2 Op 4 . - CDS 4321 - 6252 1686 ## COG2192 Predicted carbamoyl transferase, NodU family 6 2 Op 5 . - CDS 6254 - 6940 677 ## COG0279 Phosphoheptose isomerase 7 2 Op 6 . - CDS 6882 - 8603 1227 ## COG2192 Predicted carbamoyl transferase, NodU family 8 2 Op 7 . - CDS 8600 - 9004 342 ## COG2870 ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase 9 2 Op 8 . - CDS 9101 - 9541 427 ## 10 2 Op 9 . - CDS 9538 - 11019 1057 ## 11 2 Op 10 1/0.185 - CDS 11032 - 12033 773 ## COG2870 ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase 12 3 Op 1 35/0.000 - CDS 12142 - 13887 1380 ## COG1132 ABC-type multidrug transport system, ATPase and permease components 13 3 Op 2 35/0.000 - CDS 13911 - 15683 272 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 14 3 Op 3 35/0.000 - CDS 15725 - 17452 1213 ## COG1132 ABC-type multidrug transport system, ATPase and permease components 15 3 Op 4 . - CDS 17467 - 19215 244 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 16 3 Op 5 . - CDS 19205 - 20068 583 ## COG1082 Sugar phosphate isomerases/epimerases - Prom 20102 - 20161 2.1 - Term 20207 - 20262 5.1 17 4 Tu 1 . - CDS 20268 - 20645 345 ## BBR47_44850 hypothetical protein - Prom 20698 - 20757 5.3 18 5 Op 1 . - CDS 20816 - 21238 357 ## COG0736 Phosphopantetheinyl transferase (holo-ACP synthase) 19 5 Op 2 . - CDS 21190 - 22398 807 ## Calkr_2239 glycosyltransferase 28-like protein 20 5 Op 3 . - CDS 22395 - 23138 396 ## Lxx02040 dolichyl-phosphate mannose synthase 21 5 Op 4 . - CDS 23135 - 23482 499 ## Reut_A0731 hypothetical protein 22 5 Op 5 . - CDS 23558 - 24592 797 ## BSn5_04295 hypothetical protein - Term 24660 - 24698 6.2 23 6 Op 1 . - CDS 24731 - 25018 300 ## 24 6 Op 2 . - CDS 25114 - 25386 238 ## - Prom 25422 - 25481 2.0 25 7 Op 1 . - CDS 25488 - 26048 389 ## gi|228936376|ref|ZP_04099174.1| Azi28 - Term 26087 - 26129 6.3 26 7 Op 2 . - CDS 26144 - 26425 376 ## - Prom 26465 - 26524 1.5 - Term 26562 - 26599 6.0 27 8 Op 1 . - CDS 26610 - 26888 197 ## 28 8 Op 2 . - CDS 26970 - 27911 841 ## Varpa_1835 aminoglycoside phosphotransferase 29 8 Op 3 . - CDS 27932 - 28528 437 ## COG2207 AraC-type DNA-binding domain-containing proteins - Prom 28577 - 28636 3.1 - Term 28644 - 28687 1.0 30 9 Op 1 . - CDS 28738 - 29025 105 ## 31 9 Op 2 . - CDS 28931 - 29224 220 ## 32 9 Op 3 . - CDS 29252 - 30826 1370 ## COG1164 Oligoendopeptidase F 33 9 Op 4 . - CDS 30853 - 31752 620 ## COG0463 Glycosyltransferases involved in cell wall biogenesis - Prom 31797 - 31856 5.1 + Prom 31770 - 31829 2.5 34 10 Tu 1 . + CDS 31936 - 32808 671 ## + Term 32814 - 32856 7.0 + Prom 32892 - 32951 1.7 35 11 Tu 1 . + CDS 32995 - 35253 2150 ## COG2207 AraC-type DNA-binding domain-containing proteins + Term 35259 - 35287 1.3 - Term 35241 - 35282 7.5 36 12 Tu 1 . - CDS 35331 - 35702 335 ## - Prom 35741 - 35800 6.0 - Term 35835 - 35878 11.9 37 13 Tu 1 . - CDS 35879 - 36508 702 ## COG1510 Predicted transcriptional regulators - Prom 36529 - 36588 3.3 + Prom 36488 - 36547 3.5 38 14 Op 1 16/0.000 + CDS 36741 - 37940 1342 ## COG4175 ABC-type proline/glycine betaine transport system, ATPase component 39 14 Op 2 14/0.000 + CDS 37937 - 38773 1176 ## COG4176 ABC-type proline/glycine betaine transport system, permease component 40 14 Op 3 . + CDS 38812 - 39660 1176 ## COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components 41 14 Op 4 . + CDS 39688 - 40122 336 ## Mmc1_3118 hypothetical protein + Term 40134 - 40177 11.7 + Prom 40141 - 40200 2.8 42 15 Tu 1 . + CDS 40220 - 40387 98 ## + Prom 40447 - 40506 2.1 43 16 Tu 1 . + CDS 40549 - 41142 443 ## COG4430 Uncharacterized protein conserved in bacteria + Term 41172 - 41210 3.0 - Term 41159 - 41199 3.0 44 17 Op 1 . - CDS 41273 - 44170 2894 ## BBR47_57100 hypothetical protein 45 17 Op 2 . - CDS 44170 - 45435 1247 ## BBR47_57110 hypothetical protein 46 17 Op 3 . - CDS 45448 - 46083 601 ## GYMC10_5689 hypothetical protein 47 18 Op 1 . - CDS 46206 - 47489 1525 ## GYMC10_5690 von Willebrand factor type A 48 18 Op 2 . - CDS 47548 - 50115 2377 ## GYMC10_5691 hypothetical protein - Prom 50228 - 50287 2.1 - Term 50320 - 50348 -1.0 49 19 Op 1 . - CDS 50451 - 53840 4100 ## BBR47_57150 hypothetical protein 50 19 Op 2 . - CDS 53905 - 55662 2036 ## COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain - Prom 55734 - 55793 5.2 + Prom 55708 - 55767 5.2 51 20 Op 1 . + CDS 55874 - 56020 164 ## 52 20 Op 2 . + CDS 56017 - 56955 1036 ## BBR47_57170 hypothetical protein 53 20 Op 3 . + CDS 56970 - 58745 2061 ## GYMC10_5697 hypothetical protein + Term 58835 - 58880 10.6 - Term 58823 - 58868 14.4 54 21 Tu 1 . - CDS 58945 - 59922 1140 ## PPSC2_p0510 copper amine oxidase domain-containing protein - Prom 60029 - 60088 3.2 - Term 59959 - 59998 7.3 55 22 Op 1 . - CDS 60138 - 61397 1267 ## CPR_0574 hypothetical protein - Prom 61419 - 61478 3.7 56 22 Op 2 24/0.000 - CDS 61486 - 62181 851 ## COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component 57 22 Op 3 3/0.037 - CDS 62174 - 63097 247 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 - Prom 63125 - 63184 4.0 58 23 Op 1 40/0.000 - CDS 63186 - 64142 1046 ## COG0642 Signal transduction histidine kinase 59 23 Op 2 . - CDS 64139 - 64861 945 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 64886 - 64945 4.1 60 24 Tu 1 . - CDS 65248 - 71349 6177 ## COG1409 Predicted phosphohydrolases - Prom 71560 - 71619 5.0 - Term 71620 - 71670 9.1 61 25 Tu 1 . - CDS 71708 - 74524 2383 ## COG1874 Beta-galactosidase - Prom 74582 - 74641 3.7 - Term 74538 - 74569 3.1 62 26 Op 1 . - CDS 74644 - 77097 1900 ## GYMC10_2636 heparinase II/III family protein 63 26 Op 2 . - CDS 77094 - 78236 1056 ## GYMC10_2635 glycosyl hydrolase family 88 - Prom 78288 - 78347 3.5 64 27 Op 1 7/0.000 - CDS 78438 - 80030 1647 ## COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain 65 27 Op 2 1/0.185 - CDS 80023 - 81762 1653 ## COG2972 Predicted signal transduction protein with a C-terminal ATPase domain - Prom 81812 - 81871 2.1 - Term 81832 - 81885 15.2 66 28 Op 1 14/0.000 - CDS 81899 - 83233 1646 ## COG1653 ABC-type sugar transport system, periplasmic component - Prom 83273 - 83332 5.1 67 28 Op 2 38/0.000 - CDS 83372 - 84208 1066 ## COG0395 ABC-type sugar transport system, permease component 68 28 Op 3 1/0.185 - CDS 84221 - 85168 1188 ## COG1175 ABC-type sugar transport systems, permease components - Prom 85251 - 85310 2.3 - Term 85425 - 85480 8.8 69 29 Tu 1 . - CDS 85512 - 86507 1114 ## COG0673 Predicted dehydrogenases and related proteins - Prom 86625 - 86684 9.2 + Prom 86593 - 86652 8.2 70 30 Tu 1 . + CDS 86731 - 87795 1139 ## COG4129 Predicted membrane protein + Term 87885 - 87939 15.4 - Term 87879 - 87922 4.4 71 31 Op 1 1/0.185 - CDS 88111 - 88875 1015 ## COG0390 ABC-type uncharacterized transport system, permease component 72 31 Op 2 . - CDS 88875 - 89621 253 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 - Term 89942 - 89993 16.9 73 32 Tu 1 . - CDS 90018 - 90194 88 ## - Prom 90214 - 90273 5.3 74 33 Tu 1 1/0.185 - CDS 90775 - 91386 661 ## COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family 75 34 Op 1 7/0.000 - CDS 91541 - 92158 678 ## COG0400 Predicted esterase 76 34 Op 2 2/0.111 - CDS 92155 - 93105 1066 ## COG0346 Lactoylglutathione lyase and related lyases 77 34 Op 3 . - CDS 93170 - 93796 651 ## COG0778 Nitroreductase - Term 93833 - 93865 1.3 78 35 Op 1 . - CDS 93926 - 94657 727 ## COG1741 Pirin-related protein - Prom 94684 - 94743 3.6 79 35 Op 2 . - CDS 94745 - 95209 515 ## COG1846 Transcriptional regulators - Prom 95259 - 95318 5.0 - Term 95259 - 95290 3.1 80 36 Tu 1 . - CDS 95350 - 95709 351 ## Pjdr2_1273 hypothetical protein - Prom 95746 - 95805 3.4 - Term 95910 - 95956 6.1 81 37 Tu 1 . - CDS 95958 - 96224 379 ## BMQ_3357 hypothetical protein - Prom 96261 - 96320 5.4 82 38 Op 1 . - CDS 96335 - 96889 493 ## COG4767 Glycopeptide antibiotics resistance protein 83 38 Op 2 . - CDS 96906 - 97403 279 ## - Prom 97479 - 97538 6.9 - Term 97502 - 97546 7.3 84 39 Tu 1 . - CDS 97553 - 98899 1496 ## GYMC10_0520 licheninase (EC:3.2.1.73) - Prom 99142 - 99201 4.8 85 40 Tu 1 . - CDS 99229 - 99465 198 ## - Prom 99603 - 99662 5.3 86 41 Tu 1 . - CDS 99671 - 99883 159 ## gi|327439443|dbj|BAK15808.1| hypothetical protein SSIL_1385 - Prom 99916 - 99975 3.5 - Term 100002 - 100034 -0.9 87 42 Op 1 15/0.000 - CDS 100055 - 101740 1525 ## COG0247 Fe-S oxidoreductase 88 42 Op 2 . - CDS 101733 - 103148 1577 ## COG0277 FAD/FMN-containing dehydrogenases - Prom 103281 - 103340 9.5 + Prom 103254 - 103313 6.9 89 43 Tu 1 . + CDS 103353 - 104084 654 ## COG2186 Transcriptional regulators + Term 104098 - 104125 1.5 90 44 Tu 1 . + CDS 104468 - 105562 834 ## COG0463 Glycosyltransferases involved in cell wall biogenesis + Term 105602 - 105644 2.1 - Term 105725 - 105759 3.7 91 45 Tu 1 . - CDS 105786 - 107234 1496 ## COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases - Prom 107297 - 107356 2.9 92 46 Tu 1 . - CDS 107418 - 108938 1258 ## COG0463 Glycosyltransferases involved in cell wall biogenesis - Prom 108970 - 109029 2.2 - Term 108989 - 109031 9.0 93 47 Tu 1 . - CDS 109041 - 109262 264 ## gi|229136631|ref|ZP_04265311.1| Transposase Tn3 - Prom 109359 - 109418 6.2 + Prom 109343 - 109402 3.1 94 48 Tu 1 . + CDS 109450 - 111633 211 ## PROTEIN SUPPORTED gi|90020817|ref|YP_526644.1| ribosomal protein S16 + Term 111648 - 111682 3.0 95 49 Tu 1 . - CDS 111875 - 111994 74 ## - Prom 112061 - 112120 6.6 + Prom 112000 - 112059 6.7 96 50 Op 1 1/0.185 + CDS 112129 - 112611 578 ## COG1522 Transcriptional regulators 97 50 Op 2 7/0.000 + CDS 112613 - 113236 804 ## COG2059 Chromate transport protein ChrA 98 50 Op 3 . + CDS 113236 - 113781 888 ## COG2059 Chromate transport protein ChrA - Term 113910 - 113951 8.8 99 51 Tu 1 . - CDS 113960 - 114751 815 ## COG0451 Nucleoside-diphosphate-sugar epimerases + Prom 115295 - 115354 2.9 100 52 Tu 1 . + CDS 115459 - 115911 180 ## COG2207 AraC-type DNA-binding domain-containing proteins + Prom 115943 - 116002 5.6 101 53 Tu 1 . + CDS 116065 - 117369 369 ## COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases + Term 117393 - 117445 6.2 - Term 117460 - 117506 14.1 102 54 Op 1 . - CDS 117539 - 118729 1113 ## COG2404 Predicted phosphohydrolase (DHH superfamily) - Prom 118785 - 118844 3.0 103 54 Op 2 . - CDS 118965 - 119204 331 ## 104 54 Op 3 . - CDS 119226 - 120200 1078 ## COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) - Prom 120374 - 120433 6.8 + Prom 120297 - 120356 7.2 105 55 Tu 1 . + CDS 120543 - 120749 183 ## + Prom 120938 - 120997 4.7 106 56 Tu 1 . + CDS 121028 - 122035 883 ## COG2199 FOG: GGDEF domain + Term 122246 - 122281 -0.5 107 57 Tu 1 . - CDS 122213 - 122542 379 ## COG1733 Predicted transcriptional regulators - Prom 122739 - 122798 5.3 + Prom 122608 - 122667 5.2 108 58 Tu 1 . + CDS 122754 - 123473 774 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) + Term 123485 - 123528 11.1 - Term 123471 - 123515 8.1 109 59 Op 1 1/0.185 - CDS 123531 - 123797 283 ## COG5577 Spore coat protein 110 59 Op 2 1/0.185 - CDS 123839 - 124042 216 ## COG5577 Spore coat protein 111 59 Op 3 1/0.185 - CDS 124077 - 125213 1143 ## COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases 112 59 Op 4 . - CDS 125233 - 125595 347 ## COG5577 Spore coat protein 113 59 Op 5 . - CDS 125631 - 125837 346 ## BBR47_08030 hypothetical protein - Prom 125915 - 125974 2.7 - Term 125936 - 125988 8.1 114 60 Tu 1 . - CDS 125994 - 128576 3011 ## COG5492 Bacterial surface proteins containing Ig-like domains - Prom 128689 - 128748 1.7 - Term 128961 - 128992 1.5 115 61 Tu 1 . - CDS 129048 - 130082 1209 ## GYMC10_1434 S-layer domain protein - Prom 130298 - 130357 4.7 116 62 Tu 1 . - CDS 130409 - 130645 298 ## RBAM_034560 hypothetical protein - Prom 130697 - 130756 9.5 117 63 Tu 1 . + CDS 130946 - 131545 702 ## PPE_02014 hypothetical protein + Term 131591 - 131638 13.3 - Term 131578 - 131627 13.1 118 64 Op 1 . - CDS 131815 - 133557 1776 ## COG0260 Leucyl aminopeptidase 119 64 Op 2 . - CDS 133727 - 135085 1180 ## COG0642 Signal transduction histidine kinase - Prom 135261 - 135320 3.6 - Term 135333 - 135367 5.2 120 65 Op 1 . - CDS 135436 - 136740 1082 ## Pjdr2_1315 hypothetical protein 121 65 Op 2 . - CDS 136733 - 137554 548 ## COG1191 DNA-directed RNA polymerase specialized sigma subunit - Prom 137720 - 137779 5.6 + Prom 137682 - 137741 6.5 122 66 Tu 1 . + CDS 137784 - 138884 808 ## gi|329922860|ref|ZP_08278376.1| conserved domain protein + Term 138960 - 138995 7.4 - Term 138941 - 138991 10.2 123 67 Tu 1 . - CDS 139033 - 139311 304 ## Pjdr2_1313 hypothetical protein - Prom 139536 - 139595 5.1 + Prom 139649 - 139708 2.9 124 68 Tu 1 . + CDS 139777 - 139992 172 ## + Prom 140067 - 140126 3.2 125 69 Op 1 . + CDS 140237 - 140689 182 ## 126 69 Op 2 . + CDS 140686 - 144213 1580 ## COG0438 Glycosyltransferase 127 69 Op 3 . + CDS 144287 - 146251 1984 ## COG3387 Glucoamylase and related glycosyl hydrolases + Term 146264 - 146324 17.2 128 70 Tu 1 . - CDS 146554 - 146940 479 ## COG0509 Glycine cleavage system H protein (lipoate-binding) - Prom 146974 - 147033 4.1 - Term 146979 - 147032 7.3 129 71 Tu 1 . - CDS 147052 - 147600 397 ## COG0450 Peroxiredoxin - Prom 147666 - 147725 8.7 - Term 147845 - 147889 5.8 130 72 Tu 1 . - CDS 147906 - 148985 1361 ## COG0473 Isocitrate/isopropylmalate dehydrogenase - Term 149195 - 149264 7.2 131 73 Tu 1 . - CDS 149286 - 150491 1186 ## COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs - Term 150507 - 150551 11.3 132 74 Op 1 5/0.000 - CDS 150559 - 152106 1685 ## COG0119 Isopropylmalate/homocitrate/citramalate synthases 133 74 Op 2 15/0.000 - CDS 152156 - 153148 926 ## COG0059 Ketol-acid reductoisomerase - Prom 153176 - 153235 5.3 134 74 Op 3 32/0.000 - CDS 153370 - 153858 598 ## COG0440 Acetolactate synthase, small (regulatory) subunit 135 74 Op 4 . - CDS 153860 - 155602 1755 ## COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] - Term 156108 - 156154 9.4 136 75 Op 1 . - CDS 156168 - 156527 512 ## PROTEIN SUPPORTED gi|192810279|ref|ZP_03038952.1| ribosomal protein L20 137 75 Op 2 . - CDS 156572 - 156772 289 ## PROTEIN SUPPORTED gi|192810278|ref|ZP_03038951.1| ribosomal protein L35 - Term 156783 - 156829 -0.9 138 75 Op 3 . - CDS 156832 - 157332 432 ## PROTEIN SUPPORTED gi|167856598|ref|ZP_02479300.1| 50S ribosomal protein L35 - Prom 157547 - 157606 4.4 - Term 157387 - 157425 8.4 139 76 Tu 1 . - CDS 157613 - 158842 1402 ## COG1215 Glycosyltransferases, probably involved in cell wall biogenesis - Prom 159027 - 159086 4.6 140 77 Tu 1 . - CDS 159256 - 160428 660 ## COG0438 Glycosyltransferase - Prom 160673 - 160732 3.1 + Prom 160571 - 160630 5.0 141 78 Op 1 1/0.185 + CDS 160770 - 161297 429 ## PROTEIN SUPPORTED gi|52081538|ref|YP_080329.1| ribosomal protein S2 142 78 Op 2 . + CDS 161353 - 162489 968 ## COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase 143 79 Tu 1 . - CDS 162486 - 163217 815 ## COG0220 Predicted S-adenosylmethionine-dependent methyltransferase - Prom 163282 - 163341 5.0 144 80 Op 1 . - CDS 163383 - 163568 293 ## - Term 163605 - 163648 6.6 145 80 Op 2 . - CDS 163662 - 164258 688 ## - Prom 164369 - 164428 3.1 + Prom 164251 - 164310 2.1 146 81 Op 1 . + CDS 164364 - 164459 57 ## 147 81 Op 2 6/0.000 + CDS 164419 - 165387 1032 ## COG1242 Predicted Fe-S oxidoreductase 148 81 Op 3 . + CDS 165400 - 166005 514 ## COG0500 SAM-dependent methyltransferases 149 81 Op 4 . + CDS 166002 - 166967 1171 ## COG1482 Phosphomannose isomerase - Term 167012 - 167066 14.1 150 82 Tu 1 . - CDS 167095 - 167904 799 ## COG0561 Predicted hydrolases of the HAD superfamily - Prom 168033 - 168092 3.1 + Prom 167997 - 168056 2.1 151 83 Tu 1 . + CDS 168143 - 169120 1181 ## COG1609 Transcriptional regulators - Term 169406 - 169458 18.5 152 84 Op 1 . - CDS 169473 - 171254 1846 ## COG1032 Fe-S oxidoreductase - Prom 171293 - 171352 5.1 - Term 171300 - 171335 -0.9 153 84 Op 2 . - CDS 171358 - 171618 328 ## - Prom 171823 - 171882 6.3 + Prom 171714 - 171773 3.3 154 85 Tu 1 . + CDS 171833 - 172546 874 ## Pjdr2_1517 hypothetical protein + Term 172578 - 172618 3.1 - Term 172564 - 172605 8.2 155 86 Op 1 45/0.000 - CDS 172645 - 173745 1217 ## COG0842 ABC-type multidrug transport system, permease component 156 86 Op 2 . - CDS 173742 - 174713 390 ## PROTEIN SUPPORTED gi|225088774|ref|YP_002660041.1| ribosomal protein S16 - Prom 174811 - 174870 6.0 + Prom 174836 - 174895 4.3 157 87 Op 1 . + CDS 174920 - 175873 833 ## COG0564 Pseudouridylate synthases, 23S RNA-specific 158 87 Op 2 . + CDS 175886 - 176086 249 ## COG4895 Uncharacterized conserved protein 159 87 Op 3 . + CDS 176153 - 176380 267 ## 160 87 Op 4 . + CDS 176428 - 176505 62 ## 161 87 Op 5 . + CDS 176507 - 176827 424 ## COG1742 Uncharacterized conserved protein 162 87 Op 6 . + CDS 176856 - 177251 412 ## BCA_0466 hypothetical protein 163 87 Op 7 . + CDS 177275 - 177628 431 ## COG0662 Mannose-6-phosphate isomerase + Term 177631 - 177672 10.3 - Term 177725 - 177765 -0.2 164 88 Tu 1 . - CDS 177784 - 178605 211 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 - Prom 178656 - 178715 3.9 + Prom 178977 - 179036 5.9 165 89 Op 1 11/0.000 + CDS 179088 - 179753 582 ## COG0603 Predicted PP-loop superfamily ATPase 166 89 Op 2 22/0.000 + CDS 179750 - 180238 516 ## COG0720 6-pyruvoyl-tetrahydropterin synthase 167 89 Op 3 2/0.111 + CDS 180235 - 181062 854 ## COG0602 Organic radical activating enzymes + Prom 181158 - 181217 1.8 168 90 Tu 1 . + CDS 181254 - 181748 546 ## COG0780 Enzyme related to GTP cyclohydrolase I + Term 181852 - 181878 1.0 + Prom 181854 - 181913 5.0 169 91 Tu 1 . + CDS 181966 - 183498 1628 ## COG0642 Signal transduction histidine kinase + Term 183642 - 183681 8.0 170 92 Op 1 . - CDS 183613 - 183738 88 ## 171 92 Op 2 . - CDS 183924 - 185423 1230 ## COG0753 Catalase - Prom 185453 - 185512 8.6 + Prom 185566 - 185625 5.8 172 93 Tu 1 . + CDS 185681 - 186697 859 ## COG0463 Glycosyltransferases involved in cell wall biogenesis + Term 186840 - 186876 6.3 + Prom 186721 - 186780 2.9 173 94 Tu 1 . + CDS 186983 - 187273 341 ## GYMC10_6292 small acid soluble protein 174 95 Tu 1 . - CDS 187364 - 188050 401 ## - Prom 188111 - 188170 2.1 - Term 188160 - 188193 4.5 175 96 Tu 1 . - CDS 188210 - 188488 337 ## PPE_01368 hypothetical protein - Prom 188514 - 188573 2.0 - Term 188649 - 188707 3.2 176 97 Tu 1 . - CDS 188727 - 188951 335 ## COG4840 Uncharacterized protein conserved in bacteria - Prom 188980 - 189039 4.3 + Prom 188976 - 189035 5.1 177 98 Tu 1 . + CDS 189156 - 189557 477 ## COG0432 Uncharacterized conserved protein 178 99 Op 1 1/0.185 - CDS 189538 - 190179 535 ## COG1309 Transcriptional regulator 179 99 Op 2 . - CDS 190214 - 190852 449 ## COG1739 Uncharacterized conserved protein - Prom 190895 - 190954 7.0 - Term 190955 - 190995 -0.8 180 100 Tu 1 . - CDS 191049 - 192404 1679 ## COG0166 Glucose-6-phosphate isomerase + Prom 192469 - 192528 4.2 181 101 Op 1 . + CDS 192766 - 193665 1169 ## COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases 182 101 Op 2 . + CDS 193764 - 193850 62 ## + Term 193999 - 194049 14.4 183 102 Op 1 . - CDS 194397 - 194714 357 ## COG3123 Uncharacterized protein conserved in bacteria - Term 194739 - 194776 4.4 184 102 Op 2 . - CDS 194794 - 196815 2389 ## COG0021 Transketolase - Prom 196879 - 196938 4.7 + Prom 196849 - 196908 4.1 185 103 Tu 1 . + CDS 196967 - 197428 535 ## BMQ_1361 hypothetical protein + Term 197475 - 197514 3.6 - Term 197463 - 197502 3.6 186 104 Op 1 . - CDS 197551 - 198438 951 ## COG0788 Formyltetrahydrofolate hydrolase - Term 198461 - 198500 -0.4 187 104 Op 2 . - CDS 198520 - 199647 1490 ## COG0648 Endonuclease IV - Prom 199680 - 199739 4.9 + Prom 199678 - 199737 5.6 188 105 Tu 1 . + CDS 199797 - 200228 524 ## GYMC10_5225 hypothetical protein 189 106 Op 1 . - CDS 200256 - 200453 60 ## 190 106 Op 2 . - CDS 200366 - 200476 163 ## 191 106 Op 3 . - CDS 200543 - 200761 198 ## 192 106 Op 4 . - CDS 200851 - 201384 362 ## COG5652 Predicted integral membrane protein - Prom 201421 - 201480 1.6 - Term 201420 - 201472 13.2 193 107 Op 1 . - CDS 201487 - 201660 208 ## 194 107 Op 2 9/0.000 - CDS 201680 - 202843 977 ## COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis 195 107 Op 3 3/0.037 - CDS 202849 - 203520 458 ## COG0110 Acetyltransferase (isoleucine patch superfamily) 196 107 Op 4 . - CDS 203517 - 204128 482 ## COG2148 Sugar transferases involved in lipopolysaccharide synthesis 197 107 Op 5 1/0.185 - CDS 204144 - 205454 1281 ## COG0677 UDP-N-acetyl-D-mannosaminuronate dehydrogenase 198 107 Op 6 . - CDS 205514 - 206743 930 ## COG0438 Glycosyltransferase 199 107 Op 7 . - CDS 206740 - 208863 1315 ## Nther_2527 heparinase II/III family protein 200 107 Op 8 . - CDS 208856 - 211030 1592 ## COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases 201 107 Op 9 25/0.000 - CDS 211083 - 212237 839 ## COG0438 Glycosyltransferase 202 107 Op 10 . - CDS 212259 - 213461 337 ## COG0438 Glycosyltransferase - Term 213585 - 213630 -0.0 203 108 Tu 1 . - CDS 213633 - 214613 415 ## BPUM_3206 hypothetical protein - Prom 214685 - 214744 2.5 204 109 Op 1 11/0.000 - CDS 214783 - 215973 330 ## COG0438 Glycosyltransferase 205 109 Op 2 . - CDS 215977 - 217443 546 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid 206 109 Op 3 2/0.111 - CDS 217470 - 219320 771 ## COG1086 Predicted nucleoside-diphosphate sugar epimerases 207 109 Op 4 2/0.111 - CDS 219359 - 220246 452 ## COG1210 UDP-glucose pyrophosphorylase - Prom 220289 - 220348 5.0 - Term 220348 - 220385 -0.6 208 110 Op 1 5/0.000 - CDS 220494 - 221186 151 ## COG0489 ATPases involved in chromosome partitioning 209 110 Op 2 . - CDS 221167 - 221925 584 ## COG3944 Capsular polysaccharide biosynthesis protein 210 110 Op 3 . - CDS 221980 - 222273 129 ## 211 110 Op 4 . - CDS 222289 - 223398 175 ## GYMC10_5349 hypothetical protein - Prom 223532 - 223591 4.8 - Term 223587 - 223629 1.4 212 111 Tu 1 . - CDS 223663 - 224454 755 ## COG4464 Capsular polysaccharide biosynthesis protein + Prom 224726 - 224785 8.6 213 112 Tu 1 . + CDS 224929 - 225303 417 ## COG1396 Predicted transcriptional regulators + Term 225536 - 225573 -0.9 - Term 225153 - 225191 0.1 214 113 Tu 1 . - CDS 225263 - 225415 109 ## - Prom 225476 - 225535 4.4 215 114 Tu 1 . - CDS 225672 - 226190 595 ## COG0582 Integrase - Prom 226221 - 226280 7.5 216 115 Tu 1 . - CDS 226390 - 227349 982 ## COG1316 Transcriptional regulator - Prom 227378 - 227437 3.6 - Term 227540 - 227582 8.4 217 116 Op 1 38/0.000 - CDS 227610 - 228431 1035 ## COG0395 ABC-type sugar transport system, permease component 218 116 Op 2 35/0.000 - CDS 228431 - 229312 963 ## COG1175 ABC-type sugar transport systems, permease components - Term 229423 - 229460 6.2 219 116 Op 3 . - CDS 229468 - 230799 1626 ## COG1653 ABC-type sugar transport system, periplasmic component - Prom 230936 - 230995 3.3 + Prom 230527 - 230586 3.7 220 117 Tu 1 . + CDS 230648 - 230932 94 ## + Term 230957 - 230990 -0.9 - Term 231207 - 231245 -0.9 221 118 Tu 1 . - CDS 231261 - 231869 341 ## COG1357 Uncharacterized low-complexity proteins - Prom 231907 - 231966 1.8 222 119 Op 1 7/0.000 - CDS 232072 - 233613 1085 ## COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain 223 119 Op 2 1/0.185 - CDS 233588 - 235159 1312 ## COG2972 Predicted signal transduction protein with a C-terminal ATPase domain 224 119 Op 3 . - CDS 235156 - 236166 1074 ## COG1879 ABC-type sugar transport system, periplasmic component - Prom 236250 - 236309 6.2 + Prom 236209 - 236268 4.8 225 120 Op 1 24/0.000 + CDS 236438 - 237367 1048 ## COG1131 ABC-type multidrug transport system, ATPase component 226 120 Op 2 . + CDS 237360 - 238289 1085 ## COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component + Term 238377 - 238415 6.6 - Term 238365 - 238403 6.6 227 121 Tu 1 . - CDS 238444 - 239079 640 ## COG0515 Serine/threonine protein kinase - Prom 239103 - 239162 3.6 - Term 239153 - 239191 5.1 228 122 Tu 1 . - CDS 239215 - 240513 1191 ## COG0477 Permeases of the major facilitator superfamily - Prom 240634 - 240693 3.8 - Term 240584 - 240622 5.5 229 123 Op 1 . - CDS 240700 - 241152 591 ## COG2246 Predicted membrane protein 230 123 Op 2 . - CDS 241156 - 241917 736 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) 231 124 Tu 1 . - CDS 242077 - 242568 147 ## - Prom 242612 - 242671 2.6 - TRNA 242765 - 242835 75.9 # Gly TCC 0 0 - TRNA 242845 - 242919 93.2 # Gly GCC 0 0 - Term 243053 - 243101 10.6 232 125 Op 1 8/0.000 - CDS 243234 - 243905 950 ## COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase 233 125 Op 2 2/0.111 - CDS 244022 - 244996 1022 ## COG0524 Sugar kinases, ribokinase family - Prom 245234 - 245293 7.2 - Term 245425 - 245459 5.1 234 126 Op 1 . - CDS 245495 - 246226 570 ## COG5426 Uncharacterized membrane protein 235 126 Op 2 . - CDS 246295 - 247605 793 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases - Prom 247634 - 247693 2.4 236 127 Op 1 . - CDS 247695 - 248204 323 ## CTN_0359 ureidoglycolate hydrolase 237 127 Op 2 16/0.000 - CDS 248232 - 249263 1034 ## COG1879 ABC-type sugar transport system, periplasmic component 238 127 Op 3 11/0.000 - CDS 249269 - 250213 867 ## COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components 239 127 Op 4 21/0.000 - CDS 250210 - 251172 523 ## COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components 240 127 Op 5 1/0.185 - CDS 251169 - 252680 191 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 - Prom 252716 - 252775 4.0 - Term 252742 - 252803 8.0 241 128 Op 1 13/0.000 - CDS 252835 - 253710 396 ## COG0524 Sugar kinases, ribokinase family 242 128 Op 2 . - CDS 253759 - 254805 534 ## COG1609 Transcriptional regulators - Prom 254940 - 254999 7.2 243 129 Tu 1 . - CDS 255313 - 255564 116 ## - Prom 255720 - 255779 2.3 - TRNA 255430 - 255516 63.1 # Leu CAG 0 0 - TRNA 255529 - 255613 55.1 # Leu GAG 0 0 - TRNA 255631 - 255703 89.5 # Lys TTT 0 0 - TRNA 255712 - 255797 74.3 # Tyr GTA 0 0 - TRNA 255805 - 255880 91.8 # Thr TGT 0 0 - TRNA 255898 - 255973 92.9 # Phe GAA 0 0 - TRNA 256037 - 256113 69.6 # Asp GTC 0 0 - TRNA 256170 - 256245 94.8 # Val TAC 0 0 - 5S_RRNA 256185 - 256239 94.0 # AF302131 [D:490..741] # 5S ribosomal RNA # Streptococcus agalactiae # Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus. - TRNA 256268 - 256339 65.9 # Glu TTC 0 0 244 130 Op 1 . - CDS 256789 - 260238 2744 ## COG3250 Beta-galactosidase/beta-glucuronidase 245 130 Op 2 . - CDS 260241 - 261740 1029 ## Pjdr2_1683 major facilitator superfamily MFS_1 246 131 Op 1 38/0.000 - CDS 261864 - 262673 986 ## COG0395 ABC-type sugar transport system, permease component 247 131 Op 2 35/0.000 - CDS 262695 - 263657 1040 ## COG1175 ABC-type sugar transport systems, permease components 248 131 Op 3 2/0.111 - CDS 263684 - 264952 1572 ## COG1653 ABC-type sugar transport system, periplasmic component - Prom 265003 - 265062 3.9 - Term 265152 - 265183 2.5 249 132 Op 1 7/0.000 - CDS 265200 - 266444 1350 ## COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain 250 132 Op 2 . - CDS 266441 - 268216 1718 ## COG2972 Predicted signal transduction protein with a C-terminal ATPase domain - Prom 268238 - 268297 3.9 - Term 268241 - 268268 -0.4 251 133 Op 1 12/0.000 - CDS 268315 - 269889 1451 ## COG1003 Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain - Prom 269913 - 269972 1.6 252 133 Op 2 1/0.185 - CDS 270137 - 271534 1441 ## COG0403 Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain - Prom 271663 - 271722 3.2 253 134 Tu 1 . - CDS 271886 - 272665 223 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 254 135 Tu 1 . - CDS 272791 - 274542 1154 ## COG3408 Glycogen debranching enzyme - Prom 274761 - 274820 3.6 - Term 274762 - 274791 -0.4 255 136 Op 1 38/0.000 - CDS 274873 - 275706 887 ## COG0395 ABC-type sugar transport system, permease component 256 136 Op 2 35/0.000 - CDS 275731 - 276558 800 ## COG1175 ABC-type sugar transport systems, permease components - Prom 276631 - 276690 2.0 257 136 Op 3 . - CDS 276798 - 278204 1082 ## COG1653 ABC-type sugar transport system, periplasmic component - Prom 278275 - 278334 9.2 - TRNA 278637 - 278712 90.8 # Asn GTT 0 0 - TRNA 278719 - 278794 85.3 # Ala GGC 0 0 - TRNA 278872 - 278948 99.9 # Ile GAT 0 0 - 5S_RRNA 279018 - 279139 91.0 # DQ062685 [D:368..491] # 5S ribosomal RNA # Paenibacillus popilliae # Bacteria; Firmicutes; Bacillales; Paenibacillaceae; Paenibacillus. Predicted protein(s) >gi|333608009|gb|AFDH01000025.1| GENE 1 1 - 525 523 174 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_3017 NR:ns ## KEGG: Pjdr2_3017 # Name: not_defined # Def: phytanoyl-CoA dioxygenase # Organism: Paenibacillus # Pathway: not_defined # 1 171 98 274 277 142 40.0 5e-33 IAADLMGVEGVRIYRDSAFFKQPGAAATPMHQDNNYMLLDTDRSITAWIPLREVTASTGS LHFISRSHTLDNRGKTAKQNLKAAYRLGLEEMTYGGIGLGDVTFHAGWTLHNAPPNDTRD TREAMTMMYYEDGAVIVNPFGTDPTGHLNQYFGGQKTGETADTPFNPLVYTKDS >gi|333608009|gb|AFDH01000025.1| GENE 2 726 - 1661 747 311 aa, chain - ## HITS:1 COG:alr2827 KEGG:ns NR:ns ## COG: alr2827 COG0451 # Protein_GI_number: 17230319 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Nostoc sp. PCC 7120 # 7 303 2 300 342 201 36.0 2e-51 MSKAVRRVLVTGAGGYIGCSLVPELVKRGYEVRALDKYTRGQDRHFSHSGVTRIYADTRT WSGEGLEGVDAVVDLAAISHDRRGEITPHETLDINQFARYRTAKRSREAGAGRYLFMSTC GVYGFRDDPRGADEKAVPNPLTTYAKAACRSERDILLLGREGFDVTVARPAILYGYSPRM RFDLAVNAMVRAAWQTGAITLQGGGGQWRPFVHLKDAVEAVCCLLEAPAEKVTAEIFNIG SGGQNIRIRDLAELVAAVLPIPVEIRREGPADPRSYRINADKIGGVLGWKASYSLKEGIE ELYGKLVRGFV >gi|333608009|gb|AFDH01000025.1| GENE 3 1658 - 2761 672 367 aa, chain - ## HITS:1 COG:no KEGG:SGR_5936 NR:ns ## KEGG: SGR_5936 # Name: strH # Def: putative dTDP-dihydrostreptose--streptidine-6-phosphate dihydrostreptosyltransferase # Organism: S.griseus # Pathway: Streptomycin biosynthesis [PATH:sgr00521]; Biosynthesis of secondary metabolites [PATH:sgr01110] # 1 354 20 372 384 75 24.0 3e-12 MNHLDDKLLQDFRCFYESIPDKNGVYYLFFTTGLLHWAAKSLQFVPDTVPVVLIGAGLTE EEQIWVRQELRRPFFCFVEKVDEGMVWHYLAAVNSEDFGWLDIDCFVLNDRLFGEMARVP HSASMNCVWSYEYGKRTVPPARFEFRVLRTFFLFVNRKVMRELDGGSLPWSPRPFLLDAP PAFSSFKRYDTFHVLDDAHKRTLARILPENGDGTPVFPAQIIKKDGVVTRHLDTLVLYQL LAHSRGYPIHRVRCLDEDETALSDEVVHIGSVSYYRSFADPGYEVVSGEERARYNEIYER VLLLDYTIVSQFERRLPRAYSVYRRMLERDIKRLGISSEHVKEEAIKKLTGQGMSREAAE RICGGPV >gi|333608009|gb|AFDH01000025.1| GENE 4 2758 - 4296 1106 512 aa, chain - ## HITS:1 COG:DRC0037 KEGG:ns NR:ns ## COG: DRC0037 COG2192 # Protein_GI_number: 10957542 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted carbamoyl transferase, NodU family # Organism: Deinococcus radiodurans # 3 496 7 554 703 207 32.0 3e-53 MLILGLGGSIHDFSACLLHNGKIVCAIEEERLSRSKQAFVDASTFRCKAARYCLDYAGVT EKEVDLIIGADNIESRYYARYVPGIRLMNHHLAHAASAFYPSPFTEAAVLVADGRGSYLD RENKIVETVTYYAAGGTEIREIRKVTGRESGDFRNVSNSAGLFYLAVTEEIGFGPMYDEK TLAVSAYGTARLVEPFHSLYSLDDEGGFTQTLGQMNELRSLIRAELGRSESGGELFRAKA DAAYAVQVHLERILIHACRYLHKRTGSDNLCLAGSVFLNHAAVNRLLRETPFKRLYLPPA AGDAGAAAGSALYGHYVLGGHGREALLPATPYLGKPYPAEAMEEAARKAGDFLEEVKAED VNEQAARLLSEGSLVAVFRGGAEFGPKALGNRSILADARFPGNISRLNSAKKREAFRPFG YILLEGDAGKAVPPQLHPISPGLNAEMAALLENYKRITGCSLLLNTSFNLDGEPMVETPA EAVRCFLQAELDVLLMGNKLYRRKRTEGEAKA >gi|333608009|gb|AFDH01000025.1| GENE 5 4321 - 6252 1686 643 aa, chain - ## HITS:1 COG:mlr6171 KEGG:ns NR:ns ## COG: mlr6171 COG2192 # Protein_GI_number: 13475153 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted carbamoyl transferase, NodU family # Organism: Mesorhizobium loti # 293 545 292 550 673 149 34.0 2e-35 MQDGYYLSAYLHIDPLDHLLGTIIRHDQNAALFQKSGRTVKLIRLWELERVTGIKEHYVS FHSAEQAKRVLNELLRPLGLSLRDMVEIWGTPGLQTTDDYHSVQEYRTLSYHSISHLFSA VMADSDLFYNKRILGFAVDGGPDGVVDTRERTEKYFFTGGYINEGRLNLFPAESPGMLWG WAKFYFRMREGTLMALASASTSEIYGERTAGFPVLDGRHDMWESDCIRDLVNRVEQLTDE DAGRLFNGFDPRFSRRENKISMIMKIVQRVSMEVMDANIDRSLQAYSIDPSETYLALAGG FALNCPTNRHLMNKYGFAGFIAPPCVGDSGLSLGMGLYAFHKKLGGEPFDFKLAHAYFGE PDSSLPDILSSEAYAPFIERAEPMTEQQAARDIQRSLVLWFDGESEIGPRALGHRSLLGD PRTEESKRLVNEVKQREWWRPVAPIILEEETAAWFETDYPSRFMLHTFKARPDKAPLLPG VLHLDGSARVQSIGRLENPRLYGVIGEFRKQTGVPVICNTSLNDRGEPIVNTIHEALNFA LRKGISVAYINGMRIRLRNHGGYAHEGPYPRRIGMSALSDREKEAAWKELNPWDVPRDVL YHYRDPNEQEPAGIYDIRSREDAERLCREVRLVQRHKKLFRTI >gi|333608009|gb|AFDH01000025.1| GENE 6 6254 - 6940 677 228 aa, chain - ## HITS:1 COG:jhp0791 KEGG:ns NR:ns ## COG: jhp0791 COG0279 # Protein_GI_number: 15611858 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoheptose isomerase # Organism: Helicobacter pylori J99 # 19 219 21 188 192 127 36.0 1e-29 MKKAVKRHLDTLVRKHARFEGSRTALEQAFAVMEGSFRSGGKLLVCGNGGSASDAEHIVG ELMKGFRLKRPPEAASLRRLKGRLPDTAGLPGEPAPSCLDRLQLGLPAISLVSQTALVTA VLNDLAADAVFAQQVLGYGNPGDVLLGISTSGQTANVARAMEVARTLGLATVALTGAGEG RIRAWSDVVLASPSSVTDEIQEDHVKMYHTLCLMLEEEFFGPESETEG >gi|333608009|gb|AFDH01000025.1| GENE 7 6882 - 8603 1227 573 aa, chain - ## HITS:1 COG:mlr6171 KEGG:ns NR:ns ## COG: mlr6171 COG2192 # Protein_GI_number: 13475153 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted carbamoyl transferase, NodU family # Organism: Mesorhizobium loti # 10 548 25 563 673 309 36.0 9e-84 MNILGLGGSIHDYSACLVRDGEVRCMMEEERLARVKHCLGLGGKVFRCRAADYCLQAEGL DAGSLDLVVGNDLIDPVYYMKYADRIQLINHHLAHAASGFYPSPYLSAAVLVADGRGSFT CFPAERETVSYYFGNGSELTEIKKVSGTDTLDFGAAHDSESGLTDADMSNSVGGFYERVT TEIGFGLLQEGKTMGLSPYGTARHTDAFGSFYSMDDEGNFRQTLDQVKELRTYIRRTLEA AEDPEKFQAKADLAYAVQHHMERILVKACRYLYNVTGSRNLCLAGGVFLNSVANYEILRQ TPFEHIFVQPAAGDAGTAIGSALYGFHVLGGRPRTAVNIPFSPYQGKSYGPDECAKAAGA FEDRIERVEAADVSGKTAELLAEGRIVGWFQGRSEIGPRALGNRSILADPRQAAMKDTIN ARIKHREHFRPFAPAVLEERQADFFDLGCPSYYMLLVPPFLPGKGEETAAVCHEDRTGRV QTVSRRLNPRFHELLVHFESLTGTPVLLNTSFNDNGEPIVETPYDAISCFLRIDLDYLVL NGTIYKKRKEGGAGREKSGETPSGHAGSEACPF >gi|333608009|gb|AFDH01000025.1| GENE 8 8600 - 9004 342 134 aa, chain - ## HITS:1 COG:jhp0792 KEGG:ns NR:ns ## COG: jhp0792 COG2870 # Protein_GI_number: 15611859 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase # Organism: Helicobacter pylori J99 # 4 104 337 438 463 102 47.0 3e-22 MAGGCFDIFHIGHLDYLQVARGMGDILVVAVNSDASVRRIKSRPPVFEEGQRAGIIAALE AVDHVFIFGEDDCCESLRAIRPDFFVKGWDYKDKTFPEMAAAREMGCEIKIAGEDKKASS SRLRSILRGERRFL >gi|333608009|gb|AFDH01000025.1| GENE 9 9101 - 9541 427 146 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSRIVYIWDRTRDGADLENLRLELARTIREYGYSVSAASGNEGLADFLLLSETEMTEGNA ENKSVLIVTDDEEILSDSVCYRSAEEIWKTPFDVGGVVLLGEIRGFAYRFTGFSYSPMCL VHVPSRSLSYHRLVSYWIHKSGRKVR >gi|333608009|gb|AFDH01000025.1| GENE 10 9538 - 11019 1057 493 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MADEAFRQQVKNRRDYLRASRSKILVWTAAEREEDVMRLLSEKTPDLAAIRLRMPDLALF RAGGFTVLPVRDRNGLEALARYLQGERGRAEIESDSGACLSAAADSGGIVTAFVFHAPKT GTVTGMGAGSEAGADYAHLIGDIPKQYEPAELYVYRDRFCFPFYFREAESAEKLDVGTAV PGKPKPKAVIADWFLGYGDGVILLPLLRKFIDKQARLGHEVHLIAKEKLAWFFGTFLQGC RIYRSPESPAVYEAVLRSSLYRKAVLLPVSVSSPPTRHISGLFGAALGFKRPYALPEPVP VFYPPLPAEQAEELAGLRAAGCKVVGIQFHTGDAKRSWPEARAGRFIALCRERGLALVNL TPLPYPAEGCSDWSRLPVERLFAAIGELDAVVGIDSVCGHMAGFLGVAHITLWGRSFPHL QFPFTSDESHVSFRTLRANYSLVPRSADIADIPAELAFARLTDILEGRLPLGKELHTVED TLEGQGIEWVSGR >gi|333608009|gb|AFDH01000025.1| GENE 11 11032 - 12033 773 333 aa, chain - ## HITS:1 COG:BU060 KEGG:ns NR:ns ## COG: BU060 COG2870 # Protein_GI_number: 15616685 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase # Organism: Buchnera sp. APS # 22 324 14 314 315 127 32.0 3e-29 MEPSCKEKLLNRLGRKPPGTTIVLGDILLDEYTACTRDYSANEHCVVLRKGPSLFFPGNA LNVSLNIAALDGNAAILGALGTDTEADKLRSLAGDRIDSGGLIGETGRQTTLKTRLSDGN GRLLRVDREDNTPLSASVAGLLLKHADSLPAVNCAVLSDLGKGVLPDSLIAGYIRRAADK GIPVLVDPAGENIRRYAHASVLFPNLAEFNKLTSCSCANPAEAARYARGKLAEWEIGALV LKAAEAGSYLITAEEIRHVPAYCKEPACEVGAGDSFLAAFAVGIAHGLPLEESFMLSNAS AAVSVSKGYTSTVSTRELTAFIGQLKQRDDRRP >gi|333608009|gb|AFDH01000025.1| GENE 12 12142 - 13887 1380 581 aa, chain - ## HITS:1 COG:slr1494 KEGG:ns NR:ns ## COG: slr1494 COG1132 # Protein_GI_number: 16329205 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Synechocystis # 1 554 11 598 613 405 40.0 1e-113 MAAYHPGLFWKGIFQWLPFNLAPVAAGLLMKVFFDQLTGHSASSDVTWFVVALLAVNAAA TLGSIRFASRTETALNFRIKGLIRQNLLNHILGQPGARAIPGSPGEAVSQFRDDVDQLAD TIRNVNLLVVKTVFFFTALAVLLAVNVPVTLGVILPLIAVFALVQTIIIRMNVRLRPKGN GRRELSGFMSEVFQSVLAVKAAGAEDSVVEEFSRLSDERRKQVSRDRVMSQLMYALLPNL VQIGSGILLLAGARLLGPGEFTVGDYALFVHLLLHMSKFIEYSGTSITQIKQVKGYLRRL NWLLQGSSLDRMIDFKPLDLAETPPAAPPPAVSESRQFKQLQTKSLTYFYPGSSKGIKRI DLQISRGSFVVIVGRVGSGKTTLLRTILGLLPAGAGEIRWNNRRIANPGEFFIPPRTAYT PQVPKLYNGTLRENILLGLPEEGLEQAVYDAVLEEDVRLLENGLDTAVGVRGVKLSNGQI QRSAAARMFVRDSEVLVVDDMSSALDAETESRLWERLNAREEATCLVVSHRREALRRADH IIVMKDGEIEAQGTFRELTLASEEFRALLDEAGGTLPVNRP >gi|333608009|gb|AFDH01000025.1| GENE 13 13911 - 15683 272 590 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 349 565 132 347 398 109 34 1e-22 MAFLSLPKVPVLRYYKLLSTYLAALRGPVLALCALVALNIGLQLVNPQVLRVLIDTGLSS PASGIAGLAVWFAGLALVQLLATIAADYAGEWIGWTAANRLRADLLEHCLRQDGSFFQAH PAGELIERIDGDVRGLSGFFAMLTVSLCGNIGLIAGVLAVLFYENSWMGSAMTLFVAAAL LTFGRIREWTLPFWVRVGEAGADFYAYLGDQLSHTEDTRSSGAEAYTMDKFRRMLRQWFP RHMRAGFGFSLMWAASTVILGLGTVLVLALGTYLWTGHLITVGTLYMMLFYMGLLAGPLD QIRDLIGNLQRAEAHLERIGGLLAEVPVIRDPEPGEEAPLREGPLSVDFRGVTFGYGGES GSVLSDLTFSLQAGQSLGIVGRTGSGKTSVIRLLLRLYDPAEGAVLLGGTDIRRVRLEQL RERVGLVTQEVRILSGSVRDNVTFFAPHIPDERIVEVLDQLGLGGWYRALPSGLDTEIWA QGEGLSAGEAQLLALARIFLRNPSLVILDEASSRLDPSTEEKVQQATNRLLQGRTAIVIA HRLNTLRGVDRILVMDGGRIAEQGSRQALTEQPGSRYSRLLRQASGKETI >gi|333608009|gb|AFDH01000025.1| GENE 14 15725 - 17452 1213 575 aa, chain - ## HITS:1 COG:slr1494 KEGG:ns NR:ns ## COG: slr1494 COG1132 # Protein_GI_number: 16329205 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Synechocystis # 1 557 8 598 613 371 38.0 1e-102 MWRLSACHPRLFWKGAAIWLPFNLSPLIAGLLVKLVFDKLAGTGEEAGGAWFVIALLAVN ALASAGSIVWGTRTETELNFRVKSLIRQNLLEHILKRPGARSLPYTTGEAVSTFRDDVEE LADLLRLYNLLPVKALFAAAAGGILWSASPGITLLVFLPLVFMLSLGQLAAASLQKRREA SRKAESGISGFIGEVCGAAQAIRLQNAETSVSRRFRSLGEMRMRAVLKERLLDRSVSAFL TNTTQTGTGFILLAAAFLSGKGELTVGNFALFVAYIGVLTGFVQYAGYLLKTYRQACVSV NRLLHLLQEASPDTLLARRTLELKEEVPTPSPGLPASPSRLQLLETRGLTYLHGGTGKGI RNIDLHIPGGSFVVVTGRNGSGKTTLLRTLLGLLPADAGEIRWNLEKVEEPDRFFTPPRA AYTPQVPGLFNGSLKENILLGLAEERLGEVVYQAVLEKDVSQLEKGLRTIVGVKGVKLSG GQIQRTAAARMFARKSSLLVLDDLSSALDARTENELWKRLDRLRDTTFLVVSHRRAAFER ADHIVVLKDGAVEEQGTLDELLRSSGEMRRLWEQP >gi|333608009|gb|AFDH01000025.1| GENE 15 17467 - 19215 244 582 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 332 550 123 340 398 98 33 2e-19 MWTKLPILPYFRLVGPYLKQHKSRFALLTLLLAANIAVQLTIPWLLMKYFDSLNSPEPAE KFIFLFILLGVCYQILSLASDYVGEHVGWSAANKLRSRLMRHCLGQDIAFFHQYSPGELL DRVDGAVNGLAEFFYKFVVRFTNNLMLLGVTLIVLYNIHWSIGAVMTLFVAGAALVYYLL RDYALPHWVRVGETSSAFFGFIGEQLTNTEDTRSSGASGYVMRKFKALLNQWLPVHMEAG RAFSVMWMSSMLLLGLSTILTFGVSSWLWHAGAAGPGTVYMIMMYTVMLVGPIDTIRLEL GALQRASANIERIRQLFEIRPSVGDPAEGGDTLQSGALSVEFSSVSFGYTPGEPVLHGIG FKLEAGESLGIVGRTGSGKTSIARLLLRLYDPQSGTVSLGGTDISRVKLSGLRERVGIVT QDVQIFKGTVRDNLTFFNQSIPDGKIVSLLTELSLDNWFQALPQGLDTQLEAGGGGLSAG EAQLLAFARVFLKDPGLIILDEASSRLDPATEEKLDRAVRKLLRGRTAILIAHRLSTLRH VDRILVVDSGRIAENGLQGALLEDPDSRYSRLLRQSLRNRTV >gi|333608009|gb|AFDH01000025.1| GENE 16 19205 - 20068 583 287 aa, chain - ## HITS:1 COG:mlr1006 KEGG:ns NR:ns ## COG: mlr1006 COG1082 # Protein_GI_number: 13471121 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar phosphate isomerases/epimerases # Organism: Mesorhizobium loti # 30 261 31 279 296 60 28.0 3e-09 MTQIFHRSKVSCQLTPWGEAYRTGLKELAALDVAYVEIGSRLLLPFEREINRWRELLNET GHSVSGVFEFGHFAGWNRRREIYLHHDRLARMLESAGIGRVILGPGIRLKRSWTEEDRHR MMAMVTEIHKRYSFYGVAADIHPHISHCIYTREEIDYVMERAPDDLGLVPDVGHLHEAGI AMRDLLERYGPRITALHVKDARPAEGDPRSARPGSRKTVFTELGSGMLDLSSLLQDLAGH DFSGFLTLEMDEVSCPPGEAVRLSLDVLKNQSSKFSQERKKIDGHVD >gi|333608009|gb|AFDH01000025.1| GENE 17 20268 - 20645 345 125 aa, chain - ## HITS:1 COG:no KEGG:BBR47_44850 NR:ns ## KEGG: BBR47_44850 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 5 121 4 120 123 89 36.0 5e-17 MTQTLTGIDHVQLPVSNLKQSIEWYGKMFGCTLLDNYGECAMLKLENGPNLMLWQSSDYS SAHFDKDGETMPVIFFKSNEIDLLARRLEEEQVRIVSFDDGGFAKFLKFYDINHNFIGVL QLKEA >gi|333608009|gb|AFDH01000025.1| GENE 18 20816 - 21238 357 140 aa, chain - ## HITS:1 COG:STM2577 KEGG:ns NR:ns ## COG: STM2577 COG0736 # Protein_GI_number: 16765897 # Func_class: I Lipid transport and metabolism # Function: Phosphopantetheinyl transferase (holo-ACP synthase) # Organism: Salmonella typhimurium LT2 # 17 137 3 124 126 82 36.0 3e-16 MHVAYEPEGAGPGGAMIYGIGVDLQNIAQLEEAVKRQGESFLQKVFTDRERAYCDRHTSP AQHLAARWAVKEAFLKATGSGLGGKYLFKDLEVVNKSSGQPELILHGKAEEDRKRLGFHI YISISHSGEYALGQVVLCMA >gi|333608009|gb|AFDH01000025.1| GENE 19 21190 - 22398 807 402 aa, chain - ## HITS:1 COG:no KEGG:Calkr_2239 NR:ns ## KEGG: Calkr_2239 # Name: not_defined # Def: glycosyltransferase 28-like protein # Organism: C.kristjanssonii # Pathway: not_defined # 3 365 2 382 408 157 28.0 9e-37 MTKRIFFGLSGGLGPVLRCLPVAEHFRRSGHTAAFSIYGEGSAAFIESRGFKHLPDDDPT VPSAERMIAGGPVFYNLDHYYAGAGLLDPDFVQAWIHHRIRMLEKFNADLVITDMSPHTA IAARYLGIPVASITQACFHPDGQPMHYWGRPPRNLPRVTPVVNRVLDRLGLPDIRRMEQL NAGTLNFIPGIPEMDPVYTNGVRYVGPIEYPAAGPAGARLPDEPFVLVYPGRLQDTAGAT GLQLLNHVAEAFGGKEEAVVIAASDGLPDRPKAGLPGNITVIPYFNSHMLENCRLFIHHG GHGSCLSAIMKGIPSLILPTHTEREFNARKVQETGAGEYILPGTFTADHLYKLAMYVAED GYKERAGELALLIRSRNYGGAREIYKRCMSLMNRRALALEEL >gi|333608009|gb|AFDH01000025.1| GENE 20 22395 - 23138 396 247 aa, chain - ## HITS:1 COG:no KEGG:Lxx02040 NR:ns ## KEGG: Lxx02040 # Name: not_defined # Def: dolichyl-phosphate mannose synthase # Organism: L.xyli # Pathway: not_defined # 2 235 256 490 498 149 42.0 8e-35 MKPLQIVIPMAGRGQRFRDAGLSVPKMLIPVAGKPMLQWALESLTPHFPGNKIVFVCLED HLEQGELETVIRSCCGNAVIRSLPEVTGGQAETVLSAEACLDPELPLLIYNCDTYTESSI GRTIHTRGNEADGIISVFASTSPAYSYVRTDGRDRVAEVREKQAISNRATTGLYYFRKAG LFLESAEEAVRLGTAEDETYVAPLYNRLIARGYTVVADQADRCFPLGTPEEAAYFTRNYR KRESDGE >gi|333608009|gb|AFDH01000025.1| GENE 21 23135 - 23482 499 115 aa, chain - ## HITS:1 COG:no KEGG:Reut_A0731 NR:ns ## KEGG: Reut_A0731 # Name: not_defined # Def: hypothetical protein # Organism: R.eutropha # Pathway: not_defined # 3 100 12 112 132 94 43.0 1e-18 MRIVLDLDGTICTLKKEGESYADVTPLPGSVEALRRLKEEGHRIIIHTARHMKTCQGNVG EVLARVGGLTLDWLERYEIPYDEIVFGKPYGDVYVDDLALAYRSWDEVLERLNIG >gi|333608009|gb|AFDH01000025.1| GENE 22 23558 - 24592 797 344 aa, chain - ## HITS:1 COG:no KEGG:BSn5_04295 NR:ns ## KEGG: BSn5_04295 # Name: not_defined # Def: hypothetical protein # Organism: B.subtilis_BSn5 # Pathway: not_defined # 82 323 82 321 329 66 23.0 2e-09 MTFTLYKETRLNCFYVNIAALLKRLPVEDAHLIYLFNQAGLFYRDTEDEDEFQISPYYRL LDDFVYGLFGARLHKTGSSAGDDYMRTLKETLANGKSAIIESDIFYLPYSGFYRRTHFPH ALEVTGYREGTFEICDHYYEYHGFLEESELQAVFDASLDSAFYKRLYVWFLKKTEGPAPE ELTPAFCKSVIQDNLANMQGAVTYDCPSGSYPGLAAFVPICGKIKSLKTIEEDSVKFKAA SYLYEGFREIANSRYHHHHFLKAIGEHALAESYLEADQSWMVAANLLMRAATGNQFQAFE ERILARMERVKQKEADNTALLQQWLDRRTAGPSDDVRKDESTTA >gi|333608009|gb|AFDH01000025.1| GENE 23 24731 - 25018 300 95 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNQTAAKFVIATAILVSPAASEALNANATVQALTAQGTAADSLQAKPAGCAFLPGSTLAG AQTSPSAAGIVARHGEEYTAPAFTSSGFTGFALKC >gi|333608009|gb|AFDH01000025.1| GENE 24 25114 - 25386 238 90 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKETTTKFLIATAVLVSPVMGTALDVSAGQPAFVQAHTASADVQQDRAVSASEDTYLSLR TAKKASDLRLQEPGEYTVSGVSSLCVKCVA >gi|333608009|gb|AFDH01000025.1| GENE 25 25488 - 26048 389 186 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228936376|ref|ZP_04099174.1| ## NR: gi|228936376|ref|ZP_04099174.1| Azi28 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Azi28 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] # 1 178 1 180 184 82 31.0 2e-14 MFTCLDLRSCLNNCGTTGSHNYHEGYLSSARASFPEDAFQFDAPFEFKEIPFVLFKRQSF DNIVTEGQSIQFPRQRVTNIHLLGTSSDANMADYMYLMLDGQEVSKQKILLSHFISEVPF PRNECVIETSCLHTMDGPLTHRSARLWYDGIELDRPAEINRITFEDNPCMHVFGLTLESE STPGGR >gi|333608009|gb|AFDH01000025.1| GENE 26 26144 - 26425 376 93 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKEITSKFIIATAILAAPAAATALNVSAHAAAVQIQPPVISEGGPVTVAASPQFNPAAAE TTAEIQPSASAGIVELAEAEPSFTINVFKKTLA >gi|333608009|gb|AFDH01000025.1| GENE 27 26610 - 26888 197 92 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNQTAAKFVMATAILVSPAAGTALKASAHTAAVQAQPAVQPAGQGVQAVQAAPSGTLSQA GISGVKTDSREILREFGGAGNFSPSVVTKTPA >gi|333608009|gb|AFDH01000025.1| GENE 28 26970 - 27911 841 313 aa, chain - ## HITS:1 COG:no KEGG:Varpa_1835 NR:ns ## KEGG: Varpa_1835 # Name: not_defined # Def: aminoglycoside phosphotransferase # Organism: V.paradoxus_EPS # Pathway: not_defined # 9 310 209 517 519 142 34.0 2e-32 METEPIRSRYFNRLTIGPDGRSVRKTSRRDKKLRDEISWYLNLPEELHTYIPGVLGYSLQ DQVYLCLEYIQAPTLSELYMSGRLDQEGWAGVFARLDQLFGRFAAFPAELDPACLHEMYI GKTQTRMAAFLNGNERARRFYNQGYYRLNGTMVLCPFRIFESHLEDFRSLLDNPAIAVLH GDLCFSNVLYAPDKQAVKLVDPRGSFGIPGIYGDRRYDLAKIRHSLNGYEHIVHGRYSLQ TAGNDIRLEIPFTDGQLRLLHDWDRYLGSRLRDVAKIEALLFLSMLPLHRESPERQMALY AVATRLLYEIFAD >gi|333608009|gb|AFDH01000025.1| GENE 29 27932 - 28528 437 198 aa, chain - ## HITS:1 COG:all3171 KEGG:ns NR:ns ## COG: all3171 COG2207 # Protein_GI_number: 17230663 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Nostoc sp. PCC 7120 # 91 190 204 303 306 81 39.0 1e-15 MSIIAESDFKAVARSLRRQEKAHKLFVFLSFDESLPEEWKIEELQLQSPIMVLLKVNKRD LFVFYSFLDSVGLLSKPSADLPGKPEISPLLYQSLEYIEQNLCENDLSLEKVASSIFVSR CHYSRMFKEYFGFGFKEYVMNKRIQKAKAMLQKGVPVTDVCYAVGYGDLTHFGRVFKRLV GINPSVYRGQRREAPSCG >gi|333608009|gb|AFDH01000025.1| GENE 30 28738 - 29025 105 95 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGTAAENLIRQLDRLSEELRGTLTPEKLEGLDEWFRLEAPEACRNASRLPFPYNQRILRH FRRMREEERPLPAIAGFLRHGLDAIYDILRDYQSA >gi|333608009|gb|AFDH01000025.1| GENE 31 28931 - 29224 220 97 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MATIHIQKRTVVSRMERDSSEPVNSQVKTYTLTPEELDYYRRLPLSAADKAFKPGLKVMA MERREGDGDGSRESDPAVGSLVGGTEGNANAGEAGRA >gi|333608009|gb|AFDH01000025.1| GENE 32 29252 - 30826 1370 524 aa, chain - ## HITS:1 COG:BH0371 KEGG:ns NR:ns ## COG: BH0371 COG1164 # Protein_GI_number: 15612934 # Func_class: E Amino acid transport and metabolism # Function: Oligoendopeptidase F # Organism: Bacillus halodurans # 1 522 1 525 532 275 31.0 2e-73 MSQQRLQTNADSFLRKANRELAGLYVPMMNSLWKVITTGEFRYVKQCEQDEQAYQEALAS PVLRERAEYWLNRPGLPADQERQLQVLQAEMAEHRMEADERQAAASLWNDLHYTIGTFRA EAGGTLLSEQAVRVLMRRLKDGRQRKQIWQAGMRLGELTAPKLLELVKLRNRAARRLGYD DYFAMKLETAGIGLDKLTELIRQIRGGLDFAYREVKCGIDLELADRFHIARSEVRSWHYA HPFFQMHDAMEEPLAAGADEMADKVSGWLLERGFDLNAVIRKADLAERPGKGQANCCLNL DRSRDIRMSCNLSPDTKGLAVLLHETGHALFEQELDPSLPFLLRQPAHPFLSEGAALLLE RLAWDAEWREGLFGGQPDSDVRSGQERLRKETLVRLYWTLTLVEFEKQLYANPEQPLNGL WWDLVEDVQGIPRPAEWDYPYWAAKAHLSTLPVYYYNYLLGEAAASQFQHTLQIRFKEWH GKEALQHLRKEVFRPGASASWRELLAAGTSQDLTPLFLIRQLQG >gi|333608009|gb|AFDH01000025.1| GENE 33 30853 - 31752 620 299 aa, chain - ## HITS:1 COG:BS_yfnE KEGG:ns NR:ns ## COG: BS_yfnE COG0463 # Protein_GI_number: 16077797 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Bacillus subtilis # 3 237 2 265 392 76 24.0 6e-14 MTKMNVVIPVYNQAYALSLTLHGLTRQAAPYNRCPVIVVDDGSEEPVHAVAEAYRGRLNL TYVRIPRSGRAAARNAGARLLDEGCVLFCDADRIPRPGFIEAHEQAGRKHGSHFVVGQVR ELYVPDAEHNRDLVLARYAEQKYDRIPQYCRLVYRMFNESGSTASPVPWIAALSGNMSLP LELFRDLGGFDDSFREWGFEHLELGYRAHRRQIPFAYCREAVNVHLAHPRQGASYADFIR KSHDTFFRKHPHPVVGAFYDFMMGRISRIQLENLASTGMLGSAGRNTPDEYVRILNFKS >gi|333608009|gb|AFDH01000025.1| GENE 34 31936 - 32808 671 290 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNADRGRTVNSVYIDASADEIWWYVATAEGWKHFLSDIATYSGAQPDIAQGDELTLVIGE LTNRAVCTECVKPELIRFDERYTSILPDGSLWEYHLRTSFAFEQIGGGTCTQVTVTVEGY TEDERMQWVRECGETGWRQSLFHLKNTIELGLDLRNSIFNYPRLGVMNYTATAAQLEEQG LADAGIRGNFIATVYPNSPAHRAGLRGGIIVTSLGGIPVPTYHDFVKALSRFYGTNAPAD IVFYERGERHAVTADLTYDDQFTGMIDPNEVSLDEISVRRRKLSAVKEQE >gi|333608009|gb|AFDH01000025.1| GENE 35 32995 - 35253 2150 752 aa, chain + ## HITS:1 COG:BH0483 KEGG:ns NR:ns ## COG: BH0483 COG2207 # Protein_GI_number: 15613046 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Bacillus halodurans # 10 745 6 766 769 87 20.0 8e-17 MPFNKTRPTSLFLTTLISFLVIIGLFAAFDLAAFAYFKTKYHGEIIAHNQSMLKNTAEKY STHFSRINTLLFNTYNDPGVIAFNRHLQGATDEELRYLEAKSIVTRLRSDTSNPHLFLDN LVVYFLPHGVTLDKDGSSGAEDQYNRLYKSAAYPLPFWENRLKSADAFSLLPAADFKTVW NSPAEKKLLPVSFHLSGSSYLVTAYLDVDKTQRDFLGEGGNGRLFYVLNGDGSVLFGTGE GGDPAGPPVFEEKSGTAAAGGMVYFRYTGDDGLTYITGVPNASVASQLRKLNWTLLAIFV LSLGIALAVSLLSSRRINRPVKQLVSAFMSGSGSGEPSAIREFAFIQEKIADLFKEKAEI RSELRSRQSLLTKYSYINKLRSIHTDIHEWQDFIASDQSFQIIVYELRFRQAKPGEEPVP HERLASYYREHLDVLLREHSPGSHTFQMEKNQILTVISGAVAADTLQAMLGDIRHLFDSD KEQCLAAVAVSSRFEHASQFNDAYRQALERAGQATLAEETQLLLETRSGLQACALSPARE QELNACLQAGDDKGALELIGRQLADMRESGAGVVQFRQLAESMAGKVWKLMDIHKIAQDA AWPVKPLMRRLRECCTFEDYIEGYRELFFSAAALIYEKKDTEDPVIRFVMDALRDGYGEE LSLENLADRLQMSSAYLSVYIKEKTGANFSDHLNALRVSKAQELLTGTQLNIVEVGLRIG YRNITSFNRMFKKWTGQTPGEYRRAAKLTAEE >gi|333608009|gb|AFDH01000025.1| GENE 36 35331 - 35702 335 123 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTLNEKIAAYVELMNEAREISNRANSRAYELRQTAVRIGFEATAAAEHAALMAEIVRENT ESGSLSKLIHASREAASRAAEATLKALEAIKAANAADHEATEAFERTREAAEKLTEALQV EGY >gi|333608009|gb|AFDH01000025.1| GENE 37 35879 - 36508 702 209 aa, chain - ## HITS:1 COG:BS_yvaV KEGG:ns NR:ns ## COG: BS_yvaV COG1510 # Protein_GI_number: 16080427 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus subtilis # 22 190 12 179 180 117 40.0 1e-26 MFLRRETMNDLSGFTTEQSQKIQKNRERVIDSIGKNMDLYGITLSIGHLYGYMYFNNGPV TLDELSKTMGMSKTSMSTGVRTLMDLKMIDKVWGKGTRKDLYEVEPDWYQNFSDFFSIKW RKAVEGNMNALNKSLVELRHMKKEYEESPELQAVLEADEAKIAHAIDYYKWLLRLIEAME TGKIFELIPKESREPASDEAGRPERDGKE >gi|333608009|gb|AFDH01000025.1| GENE 38 36741 - 37940 1342 399 aa, chain + ## HITS:1 COG:BS_opuAA KEGG:ns NR:ns ## COG: BS_opuAA COG4175 # Protein_GI_number: 16077367 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport system, ATPase component # Organism: Bacillus subtilis # 4 392 10 398 418 472 61.0 1e-133 MPIIEVKQLTKVFGSDPKRALTLLDQGRTKEQILKEHRLTVGVNKAEFSIEQGEIFVIMG LSGSGKSTLVRLLNRLIEPTGGQVLFNGTDVLKMNPEQLRQFRRKNIGMVFQKFALFPHR TVLENAEYGLEIQGVERKKRTEMATASLKSVGLEGWENSLPDQLSGGMQQRVGLARVLAN DPEILLMDEAFSALDPLIRKDMQLELLELQSKLKKTIVFITHDLDEALRIGDRIALMKDG SIVQIGTPEEILIQPANKYVERFVEDVDLSKVLTAAHVMKKPETISLERGPRVALQLMRD SGVSSLYLTSKGMKLLGIVTAEDALQALKEGKSLEQVMQRSIPTVSPGTLLNDLFEMMAE TRLPVAVVDEEDRLKGIVIKGAVLSALAGNAEPEAGAVR >gi|333608009|gb|AFDH01000025.1| GENE 39 37937 - 38773 1176 278 aa, chain + ## HITS:1 COG:BS_opuAB KEGG:ns NR:ns ## COG: BS_opuAB COG4176 # Protein_GI_number: 16077368 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport system, permease component # Organism: Bacillus subtilis # 3 276 4 277 282 279 59.0 5e-75 MNLPKLPLGRWIEFLESWLTDHFGPLFGAIKAVIAAMVGSIETALTALPALVLIVLITAL AYWIGRWRIALFAFIGLLLIDNLGFWELSMQSLALVLTASILSIVIGVPIGILCARHTLL QNIVTPVLDFMQTMPAFVYLLPAVSFFSLGVVPGVIASIIFAIPPTIRLTNLGIRQVPEE LVEAADAFGSTPAQKLVKLQLPIAMPTIMAGVNQTIMLSLSMVVISSMIGAQGVGAYVYR AVTQAKTGVGFEAGIAIVIMAILLDRLTQNVFKKKKLN >gi|333608009|gb|AFDH01000025.1| GENE 40 38812 - 39660 1176 282 aa, chain + ## HITS:1 COG:SPy0184_2 KEGG:ns NR:ns ## COG: SPy0184_2 COG2113 # Protein_GI_number: 15674389 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, periplasmic components # Organism: Streptococcus pyogenes M1 GAS # 10 279 4 269 269 254 50.0 2e-67 MSVVLAVALVAGCSTGGGAKGKSVKLAYVAWDSEIASTNVAKYVLESKLGYKVEMLQVDA GPMWAGIADGSADAMVAAWLPGTHASYLEKYKSSVEDLGANLKGTKTGLAVPAYMKIDSI EDLKKADVSASLNNQIIGIEPGAGIMMSTEKAVADYSLSGYKLVESSSAAMAQELQKAYK EQKPIVITGWTPHWMFAKMDLKYLADPKGVYGGEEEIHTLTRKGLKEDQPNAYKFLDQFE WTPDDMAKVMVAIQEGKSPEDAAKEWADANADKVNAWIKGIE >gi|333608009|gb|AFDH01000025.1| GENE 41 39688 - 40122 336 144 aa, chain + ## HITS:1 COG:no KEGG:Mmc1_3118 NR:ns ## KEGG: Mmc1_3118 # Name: not_defined # Def: hypothetical protein # Organism: Magnetococcus_MC1 # Pathway: not_defined # 9 138 6 133 138 81 36.0 8e-15 MLSPAKSYKTSLYLSCAWNDRSAFRELVALLQTYRGRGFRFETFLLPEDHPAADADNERS LYEAVRGKMKYCQAVLIPADDRPAYSRWINKEIIAGTSEMNKPLIAVRPPYSGEPSLIVK QNADRIVGWDAEAIVQAILELSAK >gi|333608009|gb|AFDH01000025.1| GENE 42 40220 - 40387 98 55 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MDGYSLDRIYQAYFKDVYRYLFSLCLHHHTIPLTISVSSWIENSISGVFTYPVRE >gi|333608009|gb|AFDH01000025.1| GENE 43 40549 - 41142 443 197 aa, chain + ## HITS:1 COG:BH2088 KEGG:ns NR:ns ## COG: BH2088 COG4430 # Protein_GI_number: 15614651 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 1 197 1 197 197 329 84.0 2e-90 MTTSRTNPKVDEFLSKAKKWKEEYEKLRTIVLDCGLTEEFKWMHPCYTFQNKNIVLIHGF KEYCALLFHKGALLKDAHGILIRQTENVQAARQIRFTTVQEIVEMETILKAYIHEAIEVE KAGLEVNFKKNTDVVIPEELQTKFDEIPALKTAFEALTPGRQRAYILYFSEPKQSKTRVS RIEKYEQQILDGKGLND >gi|333608009|gb|AFDH01000025.1| GENE 44 41273 - 44170 2894 965 aa, chain - ## HITS:1 COG:no KEGG:BBR47_57100 NR:ns ## KEGG: BBR47_57100 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 2 775 4 759 832 415 34.0 1e-114 MQKNIQQQLFTRDREGVFRTSEGFDTVAKSPGLDPSFIKTALHPYCVYKAPQELLERGEE NSGLYPESVVAYHAENGDFVIGRSVYVATDFTGQRSASFTHQYVIPKERKEAFIRDPRRI FGIRGFQSRYDIRSGKEIPELEDIPFEPEIRAGEGDKLLETLGIDRELFRQLVFAVLASV ANKKKVFISLNTDISESAIYAKRLLELVYRCLPYAVRRQLGFMTFNSEPEAKQHLHVVFT EKGSIRLPDRKIEKDFIFDFAGGRFLNTELPAQDHAYLDYVWSNRNNPAELQKYFDFCDE AVSGLDTQTVLSAAAYSRLCVLYEVERGRTELYEQDRAAVMNGILSFFTTESYPRKPRLK ELFVGLLTREASDRDRIAGADYVEAVIRYEKFADPQVKALIVRCLGIFVSRAADAAAGDG IEGAAPLLDLLAAYPAVFTGVFGGLMKNSPALGEGYIRYRMKRVKSVQAFTGEIGFWQSH SEELMGEELFSRESYDPLRRLMRTDVRKKISLAQTLSAYFDQLGKNSPGEKNRGIRQFSR WMKLAVLLELADDLKPSGLGIEDIESLGFLLDPVNPDLYGQASRDQEGVLHVLQAAYKVL TLDGKKQSEAEDVMARLDPVDLDRAQLLLQKLMQNEVTPARFGQLVTAFHKPGTGGSADR QPGYDYERLLNFVASAGQGTDTFTDFAAWSAEDIRFRDEKGAVHPYYKAALSRAFDVHAP QVFRNKAVSRKLLETGNPSFAALFETVRLRQSGKWARIWAKNKRKIVLRGSIFLILFIAI IAVLWKPVSGWMAPTPVVIVGDLQEKTGSETVTVKASLKEPDKNTKLYVNDKVIENGSIE LKLNEGENPLVFKAVSKSGKASETVSKKVTLVPRPLVKAEQPPLTVKTAKVTVTAKAEDG NDPSPEIYINGQLAGTGSVSQQVQLVPGDNPIEITAKNKLGRLSEPVRYTVKSNPVPVGP PAGSR >gi|333608009|gb|AFDH01000025.1| GENE 45 44170 - 45435 1247 421 aa, chain - ## HITS:1 COG:no KEGG:BBR47_57110 NR:ns ## KEGG: BBR47_57110 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 1 419 1 420 421 615 69.0 1e-174 MLGYLKSLFEKKPPEKERPPYYSIVCPYCFNKFEPDDVVFRASHIKDNDDDFMLQEDERL NSWRRKFNLSEVDMEAVILPSTIPDSYKTYIQNVLVAVTDRYGETTRRRLCPYCHNELPI SAGKVPSNIISIVGASQVGKSVYMTSLIHTLQHTTASNFNAACMPLSAEISRKFRQHYHE PIFERGSMLQSTNPNEQQEPFIFQFVFKDEREAPLTIVFFDVAGEGMVQREYLDIYASHI KNSSGILFLVDPLQIRSIRDKIQINVGGEQGEFANRYDEPREVVISLFENFIAHQSNSKT DIPTAIVLTKSDMLQYLKEEDSEYIQPNSNVFRNVVHQGYLDASEFENINGEIGRFIEKV DRPFKDAVDVYFSNTAYFAVSALGTNPVNKQISGVINPTRVDEPFIWLLHKLGYIARRDA T >gi|333608009|gb|AFDH01000025.1| GENE 46 45448 - 46083 601 211 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_5689 NR:ns ## KEGG: GYMC10_5689 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 22 209 22 211 213 175 46.0 1e-42 MLWEEINEENRITRLASQPAREGECLLTWQWPKEVGAVYVYSFESGSEQPPEQLAPHQLK LFTREEYKAAGGYRERMEYIGMRGYRIFPCVMKDGRVTPYRQTGTDNTIRVSAGKARIRY SIKYGGRLFGKYKSAKIQLFCEIPVPQEALCYVKKEGGHPAGRQDGTAYPFRRDFEAGTQ TLPEIEIGKHDFLRLFFTDSRYGDVYELIQE >gi|333608009|gb|AFDH01000025.1| GENE 47 46206 - 47489 1525 427 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_5690 NR:ns ## KEGG: GYMC10_5690 # Name: not_defined # Def: von Willebrand factor type A # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 3 416 2 409 421 298 42.0 4e-79 MKQRKWNPLLTLFSVIGGFVGFIVGEFILSRWEGSWHETVLMGVYFGQLALFVGLFCLVA EMISPQLNGKNWRLRYAGDGWKFLVPATLVMLFAAGALFQVLYGFQVLGTKKAPQNYVLV IDKSDSMSQNDPQKQSLQAAKSLIGRMDGKNSAAVFTFNEETQLIAPLTKLAGSGREEIR GKLDKIGEPTGQTDIGRALTTVMDQLKKDGAADSSSSVILISDGYSDVNTTEVLSPFVKA GISVHTVGIDDSQVEGIQLLQRIAEQTGGSFHDVKSADRITDAFEQIYTAQQPWHLAGER LGAAASDGFHAFLRVAFILLIGTLIGLSLGIIFDNRHLALSFAIGGTLAGLLAGLVLETG MPGTNIPFFYRAVADIVLAFVLSLGALIIPVGTSDSHSGLRKNYQRARLEEGRYGRKDSS PVGKKFR >gi|333608009|gb|AFDH01000025.1| GENE 48 47548 - 50115 2377 855 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_5691 NR:ns ## KEGG: GYMC10_5691 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 846 1 792 794 542 39.0 1e-152 MREKLVAFANEYAAETDSTGLDGDEQRSIHHPLVFLFLGDKSAEALQTMAEINNRRWNNS TGVVYLHVGTERSGEESGKQHTEQESGTPRDWRQADPQSAEERSGHAAASDYRGQPGSER SRPDGSDPGGLHAGNIYTWTLPVPGNNPRSARPDLHDSFRSNREKLLELNVLLRRMNSRI SEFGRLYSNLQRLNIAVVTRLDDPCNVLLPELTALMETIFGEHFRSVIVDLYGLLEEKQV GEEFALRASMSFSFLRELDVLQSRDYTFSSPLQVTGEGITLPAQHGPSPLFDTVYLLSDK DERGIFTENGMKGGYETISSLNLLKYRHIKAENEGDSSKAGTYNHQHFKQNIAPPGEEGV GYVSAGYSRVSRPNQAIALTVLYHLYRHVREKMEENVQGGARLLPDLISMEPQLWDREVE SVVPGREQAVEEMYGLMHDPVSYGELKSMSLKEAELALFQDSARRFFDMNVRQRAEAAFA ERGFAKRLERIVKERIVEDPAYGYYALNGWLAEEGGAGSRSLPGELRQQLKDAANRAEQL RGELDNFYGERVDRQPIGKGSLFGWKSDKASVKNLIRYLLDEAYGLRRDLLVLELKQKLM TAYLDKLEELRERAAAAVRQMDNLEKLLRDTSRSGITAASDYLGRNINEYYEHVVKQILT EMEGRRESRFYFDERFLGNVSVEIDRDAGQWLRKLMAAARRDVLVHPLFHQTFEAELLER ANVAASYDNRDVLSKEDLFRDLYTTLENEAAIRIDVYHSTHRNRHEEKYFFGDSRSEFIQ YAFAVDGGSRTYKLGCVHEKKPGGIEKLRLMGGFRLEDLMVYRNSRRYYETYTENGYRFH SMELPETGTDSTKLS >gi|333608009|gb|AFDH01000025.1| GENE 49 50451 - 53840 4100 1129 aa, chain - ## HITS:1 COG:no KEGG:BBR47_57150 NR:ns ## KEGG: BBR47_57150 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 1 1129 1 1129 1129 1577 68.0 0 MKATVREHIQQLDVSLGGGIISDKIRVDTIDNPMLVIGLGGTGIDALLRLKYQINRRFKL PEDPFTKKKKEKPNNVEFLAIETNEHDRNKKYKGIGLDPLTEFVLLSNAEIGSVLQNRSI LEPYIKEWLSPELTITDGINGASGVRQAGRLLLFTKIVQVVQTLERKIKTLSIGTNKKLM VFILTGLSGGTGSGCFLDISYIVRGILERDYGSAGVDKVSLLGYLFTPDVNLANKSLTEH SREYIKKNGYAALKELDYWMNVDERTERFKQQYANILTVNSPMPPFNLAHLISATNLEGK LLENAYDYCMNVTAENITNFMASEDKQSGEEFAIHDYISNIRTNINQMPKAYAANYQYNI LGASSAVLPIEEMTTYLAYKVFKRMEKMFDAGPSQEEVEKLAHKLGLDPDSLHREFDKRV PEPIPGYQNSERLSYSNVIKQQVVNIDTELEQSFLSRAREEYIKSRKQLPGQVKEGFSEQ VTKIFRNPEQGPFYVSRIILQDKGFCLLKLISSYIESLKESLYRIPRDIQAAEENSEQKM TEARSAFISKDRKKDAYIEAKIQEYLLHADRERMEQMIEFYEDLYNLINQENSRIYLVFT ELLSELNKIFEKNGDILTRGDEEIDHKGNRTYYWNVVSVPDIAKLIGQVTEDRNADELIR DFTNELLEKSNQWIKEQEVDVIGSVSEFLTDHFGELITKSMEEYLVIKYGHEDSIEKLVE GRIASRLYEEAKPVFHLTNSSGHFNFPSWGFVSVPVQAPNIFKGIRNFQDNAIANSRFTI KESEVKNRIFWLNTQNGIPLFLYTPLKVYEESYERTILEPEGIGRHLVQTDRMNWTYLPS PIPEKSWGETYENGRVKTYNASVRSLFDRAADYRSVRLKGEDSGTINRYECVLTKPFDVE AFLSAYNLQLNSQRPNFGELQRCVNDLKALLQTGLEADRSKDIFGSVNEELAKENLIRSP ELLKQVREEVRKYDSIVRKIGELEQALSAHQDEEKFVAHYIEAMYTSAIAKKGALYVYDH DADEDPWEPFVNLMQTNKFVEYEIYSKMRALDAKRLSLLQRKSSRRSQEMIASEDISGLV ETLRGMAASYQEAKSALDYDRSEYAAGEDMYQFYKLVAGKVNDMVKSLK >gi|333608009|gb|AFDH01000025.1| GENE 50 53905 - 55662 2036 585 aa, chain - ## HITS:1 COG:MA0247 KEGG:ns NR:ns ## COG: MA0247 COG2304 # Protein_GI_number: 20089145 # Func_class: R General function prediction only # Function: Uncharacterized protein containing a von Willebrand factor type A (vWA) domain # Organism: Methanosarcina acetivorans str.C2A # 36 222 81 248 589 71 31.0 5e-12 MMKLQRYAYMALALLLLVMAVPGGVFAADAATDTKIDAVLAADVSTSMNESDVNKVSYEA MKMFVDMASVQGDKIGVVAYTDQILREKALLKINNAGDKKDLKTFIDQLTRGPYTDVAVG LSEAVKVLESGAEQGHVPLIVLLTDGNNSLNPGKSQADSDKVLGEAVQKAKDKGIPVYTI GLNADGKLNKDKLESVSKETGGKLFVTSSAEDLPKILSEIYASHLKLKVVPLNGFTANGQ FQDVKVTIPNGSVLEANISIMSGKPVEAKLLDPKGKEQNIPSDKIVYTSSNAYSLIKILN PAQGDWTLKIKGVPQEKIDINLVYNYDVQVVLDAQLPKTAKAGDSIAVKAHLESGGQKAA DAELYKNAKASLVVTDLDTKQTSEAPLTLTDKGIEGSWKVADSHAYEVKVKVESANFTRE SAPASVSAKSGGASSSGEASGDKGVNWVKTGSWIAGVVVLLAAALFGLAFWKKANKGFFG QLVVEIKDEETGERTNPQYKKLSGFKGKVQLHQLLSLAPEFAETKGIVFKPGPNDTLLLF NESACTIEKGGRVFDAAKGKEVKKNDRIRVTVPNIQKSVSLEYLK >gi|333608009|gb|AFDH01000025.1| GENE 51 55874 - 56020 164 48 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLTIIVLALLVLFVLIRWLTWASAKRAALTSESIDREFMNELNEGDPS >gi|333608009|gb|AFDH01000025.1| GENE 52 56017 - 56955 1036 312 aa, chain + ## HITS:1 COG:no KEGG:BBR47_57170 NR:ns ## KEGG: BBR47_57170 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 1 312 1 311 311 222 38.0 2e-56 MSGKIPIELRKARQTVHTYERLKQCTRCGAYSVLWHDNCLSCGAERKFLSIGDIVSSVLR RNIQRDALILAAIACAAFYLARTFQEMALAAGAGVLLIAVYALLRRRYAEALMNATLRKL LLGENRAIRKGILLDVDDAASDMEDGDFKSAYEKLREIGTLITGSHIRNLKVYCLNRFIL RSDMELELGTLIPDEFEPGFIAYLYEAAKVNPGLVQRDTLDYVQKYRVQIGGMLEGRATL ALVAAAALRVKEYAFEYASLLYDFVDELPRERFLRLCRLMKESPDRAPELRQKVLETAAR KYGDDPEFEGFL >gi|333608009|gb|AFDH01000025.1| GENE 53 56970 - 58745 2061 591 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_5697 NR:ns ## KEGG: GYMC10_5697 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 28 569 25 559 638 171 26.0 1e-40 MLGSTYHRSIRYRNGAILLLVLMLGLAGYKGYSVWHKTDLYARAAAEQAAGRDVEAENLY MLARDISTFDYKNDEIGAALSALRPVTELKRLFASLASEIAVTNGGSQEQARLLQAYAAY QAKKTEVATADESAKKRFGELTDAYKLDEQFAAALAGAKKSLTALLQQGNGASAQEGESA MSLLLQLPASVYKDEKTKRKDLNALFQKYDTARLQTIFNQKSFEEALGEIVRIRQFYSER KVEAVWVLPKAETYVQSTLTRLLDANDVPGFLTHAKTFQNLKELSGSSSKVNAFIQSSLR KQTAKAEQLASAGKFADAIALYKVLGDYKDTGKEIRQTEIRWMAAEPGVLLAKAKDNVRF VQTAGAKGLWGSEAIAAGVTDRGTLVTARLQADGSVVSTEGEIGGGLAVKAVSFADGLGA GKLPVVMLESQSRTRNARYTAYEVDASGLNVLLDVEADGYKLQSAGVLLVRNPAGAGGGA EAVYKLQGKQYALAEVPQQLPDPSLEAKDIQPSELPQQQAETVVRLPLAITRTGSGTAVA EMDGLYVLLTGKFSWKPGNAVVTGTYTGETKILQGDRSVQAYKINVSHIEQ >gi|333608009|gb|AFDH01000025.1| GENE 54 58945 - 59922 1140 325 aa, chain - ## HITS:1 COG:no KEGG:PPSC2_p0510 NR:ns ## KEGG: PPSC2_p0510 # Name: not_defined # Def: copper amine oxidase domain-containing protein # Organism: P.polymyxa_SC2 # Pathway: not_defined # 22 187 29 190 220 102 36.0 2e-20 MKKGAKAATAALLAFSLSGVYASASYGEGSVFKDVPGDFWGRDVIEWAVSDKLVDGYPDG TFKPAQAVVQNEFLAMLIRAYRPADFKPDPGGSDWASPYVDYASRLGWPVVQTSVIDRNA SARKALTRGRAAQLLASASGRHYSVDDSIRYLLDVGLAEGKEARTPEGFGKDDTLSRAEA VTFVQRLKVNESRLRPSPGSLEVYDLSKLNTVAYANKTYGYSFKLPAEWEGKIDIEEDGT SVRFIHRASKDAGGLLFTINVGLKEDYEQTNELIRTVYLGAKGDRHVYICYPSDVQYSLE DTKTSAEYHDLSDGIKSLKPTFQWK >gi|333608009|gb|AFDH01000025.1| GENE 55 60138 - 61397 1267 419 aa, chain - ## HITS:1 COG:no KEGG:CPR_0574 NR:ns ## KEGG: CPR_0574 # Name: not_defined # Def: hypothetical protein # Organism: C.perfringens_SM101 # Pathway: not_defined # 3 402 2 409 422 236 33.0 2e-60 MFTLKEESLRTKRILYALMAIVLAVSAFTALYYGDAFLLGTYEKMDNDDVKYMYAAKVLL EEGTLVYKSYPNPTLFIMPGFPVMLAFFMWLFGDYENTAIAVRLFQCVLQAASVYLLFVI TRHMFNSRVALVACIIAALYPPNYYTSGVILSEGIFQIIFLLMVCMTLYALKKPSVGKYI AIGALLALCAYFKPQFILFPLLIGVTWLIRRVPFKKMVLYTATIVLTACLLLSPWWVRNY AHFGKFIPFTDSSGNPMLMGVLPGEPSPGFFKEYPQYSPDVYDDSTEKVGHIILYSLKTK PFETIKWYLFDKTILAFEQTFYWLDFWGMSYHFVLALHIILCVLGVAGFIAALIRRRWDI LVAALTVVYVIGVHIPFVQFSRYMYPIMFIFTIFAAYLIAVLIQSLSSRKSSSVSRMYP >gi|333608009|gb|AFDH01000025.1| GENE 56 61486 - 62181 851 231 aa, chain - ## HITS:1 COG:BH0817 KEGG:ns NR:ns ## COG: BH0817 COG1277 # Protein_GI_number: 15613380 # Func_class: R General function prediction only # Function: ABC-type transport system involved in multi-copper enzyme maturation, permease component # Organism: Bacillus halodurans # 1 231 1 230 230 179 45.0 4e-45 MLKLMKLELKKYKIGGYFPGILIANAVILLLIGGVHVAEQIDNVIDAYQDYAMAFGVIIG FVKITFVIFASAILARLVIGEYNAKTVNILFTYPVRRKKIMAAKLLLVSLWTFATVFLSG LFVTGVFLLADAWLNMVPETLTAPMIVDHVLRILLNAVSAAGICLIPLLFGMMKKSVPAT IVSAVILVTITDSNNMGFSLNAGYILPLVFAAAGVLSAFWSIRKIETSDVL >gi|333608009|gb|AFDH01000025.1| GENE 57 62174 - 63097 247 307 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 1 297 1 298 305 99 26 1e-19 MGTLLKTTRLTKVFDGKEVISNVDMTIRQGEIYGFLGLNGAGKTTVMKMMANLIKPTGGE IEIFGEKLTENSYEILKRMGSIIEYPVFYDRLTALENLELHCEYMGFYNKAAIGEALDLV QLKNIDRKPVKDFSLGMRQRLGIARAITTRPELLLLDEPINGLDPVGIKELRNLFKMLSK EYGITLLISSHILGEIEQIADTVGVISEGKLIEQVPMDEVRGRHTEYIEVVTPDLNKAVY VLESKLGMSNYKVVGDTMMRIYERGVSQAEISKVLLLNGVEIEALNKKASSLEDYFLQSI HGGGVHA >gi|333608009|gb|AFDH01000025.1| GENE 58 63186 - 64142 1046 318 aa, chain - ## HITS:1 COG:BH0819 KEGG:ns NR:ns ## COG: BH0819 COG0642 # Protein_GI_number: 15613382 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Bacillus halodurans # 20 313 17 307 309 291 52.0 1e-78 MTGWTGLLLALLAVSLVLHFVQYRSKKKRDESLVYITTRLDGILRGGVPQGKLLHLTDDK QLIALLNGLNGLVEVNQRMTATYNKTEDSMRKMLANISHDLKTPLTVVLGYMETLIQNPS TPAEERERLLDKVHAKAREVLALINQFFDLARLESGDRDIPLNRIHLNEVCSQTILAFYE PLTSKGVEVVIAMPETPVYVLGNEEALVRILNNLISNASQYGSDGNMLGLTLREDEEHAY VEVWDRGKGISEFHQDRVFERMYTLEDSRNPLYQGSGLGLTITKRLVEKLGGVITLTSKP YMKTSFTVKLKKIAYGRT >gi|333608009|gb|AFDH01000025.1| GENE 59 64139 - 64861 945 240 aa, chain - ## HITS:1 COG:BS_ycbL KEGG:ns NR:ns ## COG: BS_ycbL COG0745 # Protein_GI_number: 16077324 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Bacillus subtilis # 8 238 1 226 226 323 68.0 2e-88 MNMQNTLLLVEDDAEISDMVSDYLTKEGFVVVRAYDGEEAVRKFRGQPFDLILLDLMLPK LGGMDFLQKVRQTSLVPVLITSAKDGDVDKALGLGFGADDYIAKPFSMIELAARIKAAIR RATQYAAAAPVERTPAPPEVLRVRELVIDLENFSVSKNGSELKLTSKEFHILKLFAGHPK RVFTKAQIYSSVWEDEYYGDENVINVHMRRLREKIEDDPSNPVYIKTLWGIGYKLGEFGE >gi|333608009|gb|AFDH01000025.1| GENE 60 65248 - 71349 6177 2033 aa, chain - ## HITS:1 COG:CAC0205 KEGG:ns NR:ns ## COG: CAC0205 COG1409 # Protein_GI_number: 15893498 # Func_class: R General function prediction only # Function: Predicted phosphohydrolases # Organism: Clostridium acetobutylicum # 1050 1446 33 455 652 129 27.0 8e-29 MVKNRRRLASFLSGMMLCSILLPAGQGLAAVPGTTASAGQIVDKRVVEIGPGATYQWMNM KLDRGPEKLHFVEFDPKNAALELQAGKTGGKVYGMQGVSQMAADADRTGNRVIAAVNGDF YDMSTGIPMGLFMGEGQILASPPADWYAFGIKTDGTSLYGPSPKLTRTLAFGGQSSPLTD INRLRGTESLVLYTPEFHTSTMTNDLGDEVVLDVTGGAVQSGQTLAMKVSEVHKNKGNTP LAQNQVVLSASGKFRDTLAPLKPGDDVTASFTLEGEWKDVRVAIGGSGLLVKDGAAQPHS DPAAHPRTAIGTKADGSVILLEIDGRQPGFSEGVDLTELGRLMKDLGAVNALNLDGGGSS TFVARMPGEKTRKILNTPSDGGERKTANGLLLVNKAPEGAADKLVVQPQTERVLTGSSAA FKAAAVDANLHPAPFNGTPQWSIDPAVGTFAPDGTFTAGSKAGEAVITAASGGLTGTGKV EVVEDLTELKFADAVRTFTSGSSETLKITALRDGQVVQADNSRIQWRTEGPIGSIDAAGV FTATAETEKTGKIYAKYKNVETSLDVHVGVPPVILEDFENGLDRYNPSAGAQFKSTGVSI ETDEEFVRFGKNSLKLAYDFTGMPGTSGAYLQVKSGAQPIQIPGYPEKISMWVYGDGNKH WLRAQMRDGKGAVALDFVDQTVGVDFKGWKYLEAVVPKGRTLPLTMDMPVRYMETSSAKK DAGAIYVDQIRALYGPAQDDMDPPVLKNFSPAEGETIKSNLPTIKVYGEDYGYDPAKHPG TTLIDPDKIRFYLDGALVQHTLYPPEGRIYYTPGTPLADGIHQAKVSVRDLSGNQTTKEW TFNVDTGSAKIVYDTPKDVYAGGTYSLDVKGIKAASIRNGRIDFAFDPGKVENIRLVRGP KLSDIQLIADIDGAAGLVSLKMKELQTASLTDQDIIGQIQYDIRKDAAGTNLIAFKSGSV SFANTGDTSFSFFGLPLSSEISNQLKLEWNDYGHVQGYETELVVKDEQGAAVEGATVLAD GSSIGTTDAQGKLRTQALTAAVKSYKLQVAKGNAYSAVSVFAVSPLGGSETPYNIGVNMG PDPAASRAFIWHTNPGTEPTVVELVKQSEFTDFQGSGVKRITGDSSLYSTLDIGTIRIHK AVADGLEPGTSYVYRVGDGKGHTSKQGTFKTAELAGDHTKFLYFADSQAGDQAGFNLWGN TVKKAVADNPDAEFMVHAGDMVDKGFNEKEWNMWFGAAQDAFLNTTLVGTIGNHEVMGTR ENSDFLAHFNQPGTGLDSLKGSSFSYDYKDVHFVVLNSEYQYEEQKEWLKKDLAKTNKKW KVAIFHRGPYGSIYDTAELRSLWAPVLEENKVDLVLNGHDHIYLRTYPMKNNHIVADGQG TTYVVAGSSGPKFYPVTKRDWQRVIDEEQTQMYASIDITGDELKFVTKTVGGRVVDEFSL YKKLVPPASVEIEQQNLKLAVGESVKLTAAVKPANATDQSVTWSVYSSTPAGAVTVTADG VVQAAGLGTAVIRATSVTAPDVYGETTVTVDRLPSGQLASIELSGKGSLKVGETDQTVTR AVYTDNSRFDLLDGVTYSSSRPSVAQIDPHGAVKALTEGTTVLSAVYGGFNAQYELTVKA SGSGGSDGGSGGDSGGDNGGGTPPVPPVEPPVKPQPGSAGKLAATAAELTAMKAAGAVTF VASAPFEELALPGNAGALLGDTAVRVQAGNVAVTLPAAVLRELGELVPAAEREGSTLKLS AARIAGEDARRLLGSASAASGARLAAGSDLLEFRLTVTTKDGKTSELTKFAKPVTIELPV GASVDARLAGIYQIAGSGALEYAGGTWHLGKLSADVNHLGTYAVLEYGKAYADVPADHWA AGVIKELTARHLIEGMTENTFAPERKVTRAEFTAMLVRLLNLKAEGAPTFSDVSGQDWYA GAVAAASKAGLVNGVSASEFAPEAVIKRQEMAAMIVRAYEAAAGKKAAGGEPVRFADVEA SPAWVREAVDAASRLGLVNGRTADGFEPEGTATRAESAQVTANLLNKLGGVIR >gi|333608009|gb|AFDH01000025.1| GENE 61 71708 - 74524 2383 938 aa, chain - ## HITS:1 COG:SP0060 KEGG:ns NR:ns ## COG: SP0060 COG1874 # Protein_GI_number: 15900005 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase # Organism: Streptococcus pneumoniae TIGR4 # 1 337 1 351 595 214 40.0 9e-55 MTRVQYDRNSWIIDGRRVFILSAAVHYFRLPRAEWAEVLDKSKEAGCNCIETYVPWNWHE EEEGQWDFSGDKDLGAFLDLCAERGLYVIVRPGPYICAEWDMGGLPYWLERKPDMQYRKF HREFLHYVDLYWDRLVPVVLPRLLSNSGTVIMVQVENEFQALGKPDKAYMEYLRDGLIER GIDVPLVTCYGAVDGAVEFRNFWSHAEEHARTLEERFADQPKGVLEFWIGWFEQWGGPRA NQKTASQVERKTYELIREGFTAINYYMFFGGTNFGHWGGRTIGEHTFMTTSYDYDAALDE YLRPTAKYKALKLVHDFVRWMEPLLTETTGSTAFIPLGKHSSAKKKSGPQGTILFIHNDD TERLNGMLDLQKFGIGCPLPGDNDSMQARALQAAGRHDHAAPASGQAAKPISPLPYTVEA GAILPVVCGVEIGRTGAGQPVTLEAMTGFTTGFDRGRGAVYHEAGQQSALVLSAAGLTGL EADCPLPQRVRTDEEGRLVFTLFHGKRPQTITVRHAGEEIARITVTDRAAVEAEAASIPE ARGTAPVLTDWQRADEEPDAEKEFAREAEGPLDFTSFGRFSGYLAYEAEVDSAEEALRTL TLPRIEDPARVYVNGRYAGQTTEIGAAAFDIPLRQGANRLRILVQNMGRYNFTQTLAEPK GLSAMPSLGGASADLTEGWQVDGAGRVHSLRALPEIEGRIGLYRTLHTGKEYDSGVIVGY GLSRLRVNGRKVVPQLWNETAWNRGEAPYGVADIGELLREGCNELEFDAEGISHIPKMKL YLYASASRISGWVTAGAADPLGAANWSALESEPESGPNAAAAPSQEAVPDRDRLPRWFKA AFDWPEHSGDDSLKRTDSVHAEQAGEPDGAKLKITLDGLSKGILWVNGFCLGRYWQIGPQ ESYKIPVSLLKKRNEVLFYDEEGCHPGGVRLELVGGPA >gi|333608009|gb|AFDH01000025.1| GENE 62 74644 - 77097 1900 817 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_2636 NR:ns ## KEGG: GYMC10_2636 # Name: not_defined # Def: heparinase II/III family protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 11 616 2 623 722 573 46.0 1e-162 MKSGRIWEGSNAGQPELAAAAASLLEPGGERRNEANDTLKRHYETRTSPVLFIRREERER LVSHVRNHYGEDMREVLASAERVAANTFLFRGEWDMEPTCVPVTFAENIDWQHVPAGDVE WAYMLNRHAYWVDLGQAYLVTGDGKYAEAFCVQLDDWLRRNPVPAGPAEASATLAWRTIE AGLRCINWIRAYECFRDYPGFTAELFGRMLVSLHEHGEYIAGAFDPWRRLSNWGVLENAG LFALGVFMPEFRNAAFWLEVSADRLRQTAALQIGRDGLHWEQSPLYHNEVFFQYMHVLHL AENNGIGLYPEWISAVRRMAKANLYSVKPSGRQLMKGDSDDNDMRDALTAGAIQFGDAEL KYAGHARVDLANLWLYGLHKAEAYERLTPVRPEAASRAFEEAGQYVMRSDWEPDARFASM NCGPMGGGHGHADMLHVDLCAYGRDLLMDPGRYTYYGGDEFRRYFKLGAAHNTTLVDGKE FTEYLDTWDYGRIAAPLGTRWSSGPAADYAEGSHDGYLHLADPVIPKRRLIFVKPDYWLL ADSFRCGDAHRFEQRFHFAPGQVRVEERGVSFTTEDGAAGLHLLPVTRTPLLTETAPGIG GNSAGAPAEKAAYERSIGCSDQAGITAGQTTAGAPAQAGTDVSGAGAQPHAAAGTSPRAE TDEGGPASLTVPTPGEGAVPAGIGAAGRGPLLVRTEDAYVSYRYNEMTPAPAVTFSCGST GPASMMQVLYPVRPGKTEVPVVEQAAVFTYNGAKVPDSVAEACRLTWTSTGEQHIVVVCH QTPSTSIMSYVVEGVQIFGEVVLIKKTPEGIETINVR >gi|333608009|gb|AFDH01000025.1| GENE 63 77094 - 78236 1056 380 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_2635 NR:ns ## KEGG: GYMC10_2635 # Name: not_defined # Def: glycosyl hydrolase family 88 # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 374 1 373 373 524 69.0 1e-147 MWKAAIEDAVLKTRRNIGKFGDKFPHVSDGGSYELRDNDEWTCGFWPGMLWLCYEYTKDE VFLEAARSTVSGMKKRMEENKVLAHHDIGFLYSLSSKAEWIILGDEDAKNLTLEAADKLL ERWNDKGQFIQAWGPMGDETEGGRIIIDCLLNLPLLYWAYEQTGDEKYRNTAVIQADKSR RFLVRGDDSSYHTFFFEPVTGEPIGGATHQGFTNGSTWSRGQAWGVYGFALSYRYTGNAA YLETSKRMARYFASQLPEDSVAYWDFYAEVTPETPRDSSASAIVAAGLHELIGLLEPDDP DRAEFADLLERSLASLVKNYSTTGEPEAEGLLKHGSYHVRGNLGLDDYMVWGDYYYLEAL MRMERNIPGYWYDRKERTLG >gi|333608009|gb|AFDH01000025.1| GENE 64 78438 - 80030 1647 530 aa, chain - ## HITS:1 COG:BH2109 KEGG:ns NR:ns ## COG: BH2109 COG4753 # Protein_GI_number: 15614672 # Func_class: T Signal transduction mechanisms # Function: Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain # Organism: Bacillus halodurans # 1 530 1 522 525 115 24.0 1e-25 MYNVMLIDDDVPMLKYLHKLIDWETCGLHVAGETYSSVRALQMFKELLPDIVVTDIGLPQ MNGLELAAQFSSIKPGVRIIFLTCHEDFHYAKQALLLNADDYLIKDELTEDQLLRSLKQS VGRIQQSVVSLEQVSYREDVNRNRDLLKESLFQRLIKGTEADGLLGYAERLGVEWKHPAY ALLLGHLSLAGLPEKYASRDMPLLRYGVYNIACEVAQTYEGVTVFNTGDFLVILLNYRPG LTFNEKQYLYDYTADLRDKCDRFLHVGLRFLTSPARLELSSAGPTFRSMVKNRYRFYYAD SGYVAPKFDDGSEVYYLPAEGLFGQELEDIGAAAAHRDHALLEGAIERIRRTACGKLADP EELNRLCVRKARQLFIQQARPGADTEEDEWIPYLQTALHVDDALAVFGWMIQRLMIGVDT GAAPAVKEPKLQVIDDYIYRHLGENVSSIDVAEHLFMNPSYFSRYFKRLTGESFTDYAHR YKVKIACKALQMSEDPVELIAAKLGYSDRTYFSKVFKKYTGRTPREYRER >gi|333608009|gb|AFDH01000025.1| GENE 65 80023 - 81762 1653 579 aa, chain - ## HITS:1 COG:BH3678 KEGG:ns NR:ns ## COG: BH3678 COG2972 # Protein_GI_number: 15616240 # Func_class: T Signal transduction mechanisms # Function: Predicted signal transduction protein with a C-terminal ATPase domain # Organism: Bacillus halodurans # 145 577 136 595 605 142 26.0 3e-33 MLQSSFYRKIQFSFLIFILLPIVTVSSLAYITIKRTTMDKMEAANQSILQLMTKDIEKLL DDISFASHFYVQNVEIRDNLREIQGMTGIHTFDDFNKYTKIRNSYDQVSINALNKYVRLF LVNDTGFIVPYMDVGSGQTLPQMESDWKTVKPRIVLDNPTSIQWLGTVAGSGPDKDTYYY LSRVIRDSETGSLLGTLMIGISSTYFDPYFSSSTSGQFTLFEKNGQRIAGNASIAYSEQE LPRKQGERNIRSEAVIAQGNWKLVYETPEKTATGQITQTFFVSAMAVAVFIIMFLMLSFF LARSLHRPIRKLQRIAHQFGEGNRSIRFPDKGRDEISDLGRSFNSMLDEINGLIAGIETE QEQKRVLELQALFAQIRPHFLLNTLNSIKCSLYVSDDRLHGRMIDSLSSLLRAYMRVNEP STLLSESVLLKHYLEIMNMRNDLALELSVRIPAELERQPMPMLLLQPIVENAVVHGFVDK EEGGSIALTAERAQDRIMIRISDNGRGMSDGQLRELQAVLNQDPDQQSSYRRVGLLNVLQ RMRLTYGMSAEMGMERSESGGVTVRLSFPIQPSEGESHV >gi|333608009|gb|AFDH01000025.1| GENE 66 81899 - 83233 1646 444 aa, chain - ## HITS:1 COG:PH0753 KEGG:ns NR:ns ## COG: PH0753 COG1653 # Protein_GI_number: 14590623 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Pyrococcus horikoshii # 39 342 68 373 464 84 27.0 4e-16 MKKATAWVLICVMLAITVLSGCGKSEEGSAGKDSSGKPVTIKYYNWDNETQAQSTKKYID QFQEKYPNIKVQHISLVPGNSLESLKKLDVLLTSGEKVDVVMFPSISELDTRVANKVLAP LDEFYAKDNVKPEEEYFVNPKFEGKYYGIQNNITTNFVLLNKDALDEAGLPVPKLGWTWD EFREYAKKLNKGEGTEKRYGAYFHNWPMYANPDAQIYMQHPFLTEEGKTNFDSPTYTYFF NLRRAMEKEDKTAKPYADVIGAKLNYRAEFFNQKAAMLLSGSWMISEIGDTQKFPHTFKT AVAPVPVQKKGDSTDMFMGGNYMSVGASSEHKQEAYQFMRFMSTNLTDARAELPGWKKGD AKPLAERMIGQNKDLYDVDSLMYTLFGAGIKALPPSKNSISYAAALDKILTDGFSMFILD NKKVEDVQKWMVDEANKVIEKNKK >gi|333608009|gb|AFDH01000025.1| GENE 67 83372 - 84208 1066 278 aa, chain - ## HITS:1 COG:lin0219 KEGG:ns NR:ns ## COG: lin0219 COG0395 # Protein_GI_number: 16799296 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Listeria innocua # 9 277 11 281 282 167 37.0 2e-41 MSLRKFDFWKLFNTVIIGLFSLCFLIPLLWMTSAAMKYEKDVMVFPIQWIPQAWNALGNF KAVWAGNVPFHLFYFNSIKLSVIVTALTLIISSMAAFSFTKLNFRGRNIAFTLLLTFMIV PEQATLIPRFLLIRWLGLYDTHLALILMMMFSIYFTFLLRQFMMSIHSDFIEAAKIDGAG YFRIYWQIMLPLCKPILATVAIIKFIWTWNDYQMPLIFLLDKELYPITLGIQLFKDDYAD NFAVLMMASLSAIIPLLVIFIALQKHVIKGIALGGVKG >gi|333608009|gb|AFDH01000025.1| GENE 68 84221 - 85168 1188 315 aa, chain - ## HITS:1 COG:lin0218 KEGG:ns NR:ns ## COG: lin0218 COG1175 # Protein_GI_number: 16799295 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Listeria innocua # 26 314 6 292 292 199 38.0 5e-51 MKLDSSNVSRAAASAPKKPFWNHRRKEATIGWLFLSPELIGIVLLYLFPVLFSLYMSLCD WNLLGGMSSVKFVGLQNYVEMFQDDKVLAAIKNNLIYTVLTVPVGMALSLVLAVLIHTKV YAQSYFKVAFFIPYISSIIAVGAVWSALYHPSLGPINGFLKSMGIDNPPMWLADPKYALL SIAIIAIWAGLGYQIIIYMAGLSGIPDDMYEAASIDGASSLQKFYKITMPMLGPTNTFLF ITLLMGSFKVFDLIAFLTSGGPNNASTVLVYRIYEEGFRNFRMGYASSISWLLFAIVGII TLISWQIQKRQVHYG >gi|333608009|gb|AFDH01000025.1| GENE 69 85512 - 86507 1114 331 aa, chain - ## HITS:1 COG:BS_yulF KEGG:ns NR:ns ## COG: BS_yulF COG0673 # Protein_GI_number: 16080169 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Bacillus subtilis # 1 327 1 327 328 414 60.0 1e-115 MIRFAVVGTNWITEELIHAGRESEDFRLTGVYSRTAERARQFADKFDIPHIYTDLETMAQ SGEFDAVYIASPNSFHAEQAIALMKGGKHVLCEKPIASNTRELRAMIEAAKENKVLLMEA LKSTLLPNFKAIRDNLHKIGPVRRYFGSYCQYSSRYDAYKQGTVLNAFNPVFSNGSMMDL GVYCVHPAVQLFGKPDAVKAGGMLLESGVDGEGSVLLKYGEMDAVIMHSKITHSYQSSEI QGENGTMVIDKISQPEKVEIRYRDGSVEDLTQPQIARNMYYEVQEFIDLIRDGKTESAVN SHEVSLTAMEIMDEARRQIGLVFPADEKTSV >gi|333608009|gb|AFDH01000025.1| GENE 70 86731 - 87795 1139 354 aa, chain + ## HITS:1 COG:BS_ygaE KEGG:ns NR:ns ## COG: BS_ygaE COG4129 # Protein_GI_number: 16077936 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Bacillus subtilis # 1 115 1 115 353 62 26.0 1e-09 MFVGLRVVKTVIAIAVSITIARLLHLEPDHFAGIVSMLAVQPSVYRSLHHTLSHMASALL ASALGITAVLTLGSGPLVIAAAALVVMALHVKLGRTASLALAVIVTVNTMGTADELTGGM AAYNQFLLVLVGMTVGTAVNAIRKPVHREREDVLLAKSETMLRVLFYYIQIDLRAGKMTP YKPDMRLQIEEVRSYIESGKAVSQLVREDRWLSRGEDPGAGELFQTYETMIERIRDLVKA LQKADLSHPEAVRLIRVLGLLIRAQERTTERGRSIPLRYLLPVLKPAAVQDGRTGAEDIA RLFPYYQAYEAMADYARELEASRRAVDARPAFRHAPVKRLGTALRSKLFDHPAG >gi|333608009|gb|AFDH01000025.1| GENE 71 88111 - 88875 1015 254 aa, chain - ## HITS:1 COG:BS_yjkA KEGG:ns NR:ns ## COG: BS_yjkA COG0390 # Protein_GI_number: 16078289 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Bacillus subtilis # 1 247 1 247 250 182 46.0 6e-46 MSNLALASTLVFVAVTILLSMRQKLGLEKEIIVGTIRSAVQLLFVGYVLHMVFDAKNPLF MVLIVAAMIAVATWNVSKRAKEIPGIKTRIALALACTEAVTMSLLLGFGIIEAIPQFIIP ISGITIGSSMIVAGLFLNAMKREMEAARGEIEALLALGATAKQAIHASIKRSVRSGMIPT IDGMKTTGLVQLPGMMTGMIAAGADPVEAVRYQILIMFVLSSAAALTAMLLGLLSAPLWF TGDGRLRVPDAKKL >gi|333608009|gb|AFDH01000025.1| GENE 72 88875 - 89621 253 248 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 22 244 16 245 245 102 30 2e-20 MGTRLILHGISKKRHDRPSDYLFRDISGEVGEGERVAVIGTSGQGKTTLLRILARLDRPD EGELQLHGKNSDGWKPQEWRKKICYVAQQPVMLPGSVEENLQTVSRLHGTPFDRALAERY MAALGLEGLDWAKQGGDLSGGEKQRTALVRAMLLQPDVMLLDEVTASLDPGSKRAAERLL VDWSQSGGTSLVWITHDLEQAAQTSDFVWFMDEGRLMESARTGEFFGGPSTEQARRFISR LDREREAD >gi|333608009|gb|AFDH01000025.1| GENE 73 90018 - 90194 88 58 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKTRTQRTLLAIPFVLAVITIATRLDFYYDSNMTIRFIAAFLVAFPAGYWAAGGAKED >gi|333608009|gb|AFDH01000025.1| GENE 74 90775 - 91386 661 203 aa, chain - ## HITS:1 COG:BH2278 KEGG:ns NR:ns ## COG: BH2278 COG1853 # Protein_GI_number: 15614841 # Func_class: R General function prediction only # Function: Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family # Organism: Bacillus halodurans # 2 202 1 202 209 227 56.0 1e-59 MIEIDPESQSERETYKLLIGSIIPRPVAFVTTLSKEGVVNAAPFSYFNIVAANPPLISVS VQRKNGEPKDTARNAHDLGAFVVHISDESYIDAINATAAGLPPDESEIELAGLTLVESGK IAVPGVSEAKIRMECVLERSIPLGGIESAPACDLLIGRVVRFHIADELYSEGRIDPGALR PVSRLAGSSYSKLGEIFSLERPE >gi|333608009|gb|AFDH01000025.1| GENE 75 91541 - 92158 678 205 aa, chain - ## HITS:1 COG:BS_yodD KEGG:ns NR:ns ## COG: BS_yodD COG0400 # Protein_GI_number: 16079014 # Func_class: R General function prediction only # Function: Predicted esterase # Organism: Bacillus subtilis # 3 201 1 197 200 258 62.0 6e-69 MTMKHVYREGSNPAAPVLVLFHGTGGTEHDLLPLAERISPESSVLSVRGNVLENGMPRFF RRLAEGIFDEEDLIFRTEELYAFLNEAAEQYGFDRGNLVAVGYSNGANIAGSLLFHYKQV LKGAILHHPMVPRRGIELPDSEDLPVFIGAGKNDPLCTPGETEELKNLLESAGAEVDIHW ENYGHQLTGSEVNAAAQWFADHFKG >gi|333608009|gb|AFDH01000025.1| GENE 76 92155 - 93105 1066 316 aa, chain - ## HITS:1 COG:BS_ydfO KEGG:ns NR:ns ## COG: BS_ydfO COG0346 # Protein_GI_number: 16077616 # Func_class: E Amino acid transport and metabolism # Function: Lactoylglutathione lyase and related lyases # Organism: Bacillus subtilis # 1 312 1 312 312 383 59.0 1e-106 MTKKTAGIHHITAFVKDAQANVDFYAGVLGLRLVKKTINFDAPEVYHLYFGNESGSPGTA ITFFPWATSRKGRIGGGQVGIVTFAVPQGALPFWKERLQKLDIPYRETKRFSETYIQFQD KDGLELELVERAEGTESKWSFGGVLADKAIKGFGGAVLYSLNPESTMHTVEHVMGLTRTA EEEGLVRFVSEGDIGNVVDIKKDVVPQGAGGAGTVHHIAWRAKDFEDHEDWRDHVQTNGF EPTPVIDRQYFNAIYFREAGGILFEIATDPPGFTRDEPFEALGEELVLPEWYEPHRATIQ KGLPPIEVRVLEADKQ >gi|333608009|gb|AFDH01000025.1| GENE 77 93170 - 93796 651 208 aa, chain - ## HITS:1 COG:CAC0850 KEGG:ns NR:ns ## COG: CAC0850 COG0778 # Protein_GI_number: 15894137 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Clostridium acetobutylicum # 1 208 1 208 208 236 54.0 3e-62 MNDFETVLKERRSATKFVQGVELPDQELDAIFSLVKYTPSAFNLQHAHYVVVKDPAVKER VYEAANKQYKVKMASAAILVLGHRDAHHEAGKINEGLLNLGVITKQEYDQTIQAVTAFYE DRGEAFKHDEAIRNASLSAMTFMLAAKDRGWDTCPMIGFDPDAMREALNIPDRYVPALLI TIGKEDVSGQRPRGYRKPVGEFVSRDSF >gi|333608009|gb|AFDH01000025.1| GENE 78 93926 - 94657 727 243 aa, chain - ## HITS:1 COG:RSc2208 KEGG:ns NR:ns ## COG: RSc2208 COG1741 # Protein_GI_number: 17546927 # Func_class: R General function prediction only # Function: Pirin-related protein # Organism: Ralstonia solanacearum # 1 243 1 232 232 188 42.0 9e-48 MIKVHGALARITRNHGWLYTSHSFSFGGYFDPGNTEFGPLRVFNDDRVQPLTGFGFHKHE EMEIVTVVLRGELQHEDTLGNKTVMRAGEVQRMTAGTGIEHSETNPSASEEVELLQLWFT PAEEGLAPSYEQASYDLGTRRNEWVPVVTGRQRETAEGADGGGVKPARIHQDLTLYLAEL EPGHTLTFSQKPGRRMYVFVIEGSAAADGAYKLSRRDAARITEQEGLDLHTETGARLMLI DLP >gi|333608009|gb|AFDH01000025.1| GENE 79 94745 - 95209 515 154 aa, chain - ## HITS:1 COG:BS_ykvE KEGG:ns NR:ns ## COG: BS_ykvE COG1846 # Protein_GI_number: 16078431 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 13 152 2 141 145 150 55.0 7e-37 MQEQDSTLVNEETDLALKLFVVLSKAQKVIMDRSVKDMKRHGLSPSEFAILELLYHKGKF PLQQIGDKILVTSGSITYNIDKLEKKELLRRVSCPSDRRVTYAEITEQGTALFNDIFPEH AEVVKASMGGLTAEEKKLAIGLIKKLGTAAQKQS >gi|333608009|gb|AFDH01000025.1| GENE 80 95350 - 95709 351 119 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_1273 NR:ns ## KEGG: Pjdr2_1273 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 3 114 4 115 115 125 51.0 7e-28 MKVEMDLYNDWIETVKEIFRGSGAPLPQDWSAEEVGREYYLQTSSSEEEAEERRKANEQR LTDMQRTLLDNMETVVVPDIREKTGYGGSQFRFRWIYSQGEHIVEECSQYRIPLGPSPE >gi|333608009|gb|AFDH01000025.1| GENE 81 95958 - 96224 379 88 aa, chain - ## HITS:1 COG:no KEGG:BMQ_3357 NR:ns ## KEGG: BMQ_3357 # Name: not_defined # Def: hypothetical protein # Organism: B.megaterium_QM_B1551 # Pathway: not_defined # 1 88 1 87 87 90 63.0 1e-17 MKKKLAAVLAAALFVALPLGLSDHAAAKAAKTYKNCTELNKDYKGGVARSDSTKNKGGKT KYKPYASKELYDANKKLDRDKDQIACER >gi|333608009|gb|AFDH01000025.1| GENE 82 96335 - 96889 493 184 aa, chain - ## HITS:1 COG:lin1900 KEGG:ns NR:ns ## COG: lin1900 COG4767 # Protein_GI_number: 16800966 # Func_class: V Defense mechanisms # Function: Glycopeptide antibiotics resistance protein # Organism: Listeria innocua # 5 169 4 182 191 60 27.0 2e-09 MQWDFDASTAVLALLVLIVLLVRLKTKHNRSYLYLLLYAIFYLYIVNVIRYTLFPVPLFI QEDSMFRLSYDLNPTGFIRWDDAQIYNNILLSVPFGFGLPFLRKVSFKRMLLAGVMFGLA IEGAQLVLSLLIRAGYRTVDVNDVLLNFIGVMVGYGCYRLFAAIVRGISRDKKRGLAALL DTAV >gi|333608009|gb|AFDH01000025.1| GENE 83 96906 - 97403 279 165 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLRNILLVIFLLGCLPGCIESPEQSKGTFIGYVVQKDTKANRALLVSDTESGLLGNEKVY DADWIAGIADQVNVGEKVTVETIGVIMTSYPGQTSGTFLSKEKPGKPEGAVLEPEEVLRR AFHQEETRIPTVKKISLDNEKKVWHVTLYDNILFKDIEVVVQDRE >gi|333608009|gb|AFDH01000025.1| GENE 84 97553 - 98899 1496 448 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_0520 NR:ns ## KEGG: GYMC10_0520 # Name: not_defined # Def: licheninase (EC:3.2.1.73) # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 48 447 26 406 407 397 53.0 1e-109 MKKTLLGFTASACLLCSLVAAPVMAGAQGIPAASASEDTLVQSQAVNAVAAAALKPFPQH VSYTSGTIKPNNYTQAQLDQQVKTKYDEWKSRYLVKHPKISNQYYVFYNKEKIVTKPKDV VSCSEGHGYGMLITAYMAGHDADAQTYFDGLYRFYKAHPSSIDPALMAWQQAKDSSGNIV DTSGSDAATDGDMDIAYALLLADKQWGSSGTVNYKSEAVKIINAIMKREVHAKYFHLKMG DWASDSDPEYGPGTRASDFMMNHLKAFKAATGNANWDKVSDTTYNVINTVFKNNSPNTGL LPDFIVRKSDGTYAPAPEGYLEEPTDNDYSWNSCRTPWRIATDYLISGDTRALSQVRKMN SWIQSATGGNPAKIASGYELSGKVIEADHAIAFTAPFAVSAMVDSSNQAWLNKVWSDIVN SPTSDSYYYDNSIRVLSMIMVSGNWWTP >gi|333608009|gb|AFDH01000025.1| GENE 85 99229 - 99465 198 78 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MEKAFQVCVLLFNQANEYQLTAKLYDSLGYKGQAKRYAHKAEAFNESAYIVRSCLGISFT DVIEAVSAAEACPENKES >gi|333608009|gb|AFDH01000025.1| GENE 86 99671 - 99883 159 70 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|327439443|dbj|BAK15808.1| ## NR: gi|327439443|dbj|BAK15808.1| hypothetical protein SSIL_1385 [Solibacillus silvestris StLB046] # 1 67 1 67 71 63 47.0 4e-09 MAYTRGNCRLRLLLQRAGMKQAELARRTGYSRHQISNWVNDREKMSFDAAATVAFTLDCH MEELYEFHEG >gi|333608009|gb|AFDH01000025.1| GENE 87 100055 - 101740 1525 561 aa, chain - ## HITS:1 COG:BS_ysfD KEGG:ns NR:ns ## COG: BS_ysfD COG0247 # Protein_GI_number: 16079921 # Func_class: C Energy production and conversion # Function: Fe-S oxidoreductase # Organism: Bacillus subtilis # 8 317 2 314 444 319 50.0 1e-86 MAEKAACTTSNPLAQKLKLRLDEDQLTNCMRCGFCLPACPTFRETGIEAESPRGRIALMK AVADGIMAPDAAFEEQMNHCLGCRACEPACPADVKYGQLIEQARDAIEDHTDSHRGWVKL ARRTAFKAVFPKQNRMKLLGGALGFYQRSGLQKITRGSGIMKLFPDHMREMEQILPESSS RGVIERIGGRHAAVGAKIATVGLFRGCLMDVMFTETNVHTVELLTQAGFEVVIPDTQNCC GALHAHSGEADGARSLARGNIRAFREAGVDYIVSNAGGCGAILTEYDHLLHEDAQWKDDA AWFAARVKDVSDLLVNFGRVPKFAEQGWAIAAGGLGAAAAGACAAGASAAQAATTARQAG ASAAFAGTPAKAAAEADAPGAAGAEPGGPASAGGGTTAAPADIGAELAAIDDASAQAETA AACTGSADALAQAQPPAGLATAAPSVRITYQDSCHLRNVMRSSDAPRKLMRQVAGVEYVE MFEADRCCGSAGIYNLTQPEMANQILDHKMVHANATDARYLLTSNPGCLLQMKLGNERHG DGSMKVMHVVDFLHERLLGDR >gi|333608009|gb|AFDH01000025.1| GENE 88 101733 - 103148 1577 471 aa, chain - ## HITS:1 COG:BS_ysfC KEGG:ns NR:ns ## COG: BS_ysfC COG0277 # Protein_GI_number: 16079920 # Func_class: C Energy production and conversion # Function: FAD/FMN-containing dehydrogenases # Organism: Bacillus subtilis # 1 470 1 470 470 598 64.0 1e-171 MLNEQVRQKLIAIAGAEGFKDDPQSLVTHSYDGTPMLQSLPDGVIYPADTAQVSAIMKVL SEHRVPIISRGSGTNLCGGTVPVQGGVVMVMHRMNRILEVDLENLTAVVQPGLNTKQFIT HVESLGLFYPPDPSSMSISTIGGNIAECSGGLRGLKYGTTKDYVIGLEAVLPSGEIIRTG GKLMKDVAGYDLTKLLVGSEGTLAVITEATLKLIPPPKAKKTMLAMYKDLYGAARTVSKI IENRIIPATLEFLDNPTIRVVDDFAKLGLPLDMEAILLIEQDGDPATVERDIEMIENICR GENADRIAVAADEEEALKLLTARRSAFTALARLRPTTILEDATVPRSKIADMVMEINRIA KKHDVTICTFGHAGDGNLHPTATTDARDPEEVHRVEAAFEEIFEAAIRLGGTITGEHGVG LVKAPFLEWKVGAAGIEVMKGIKQAFDPLNLLNPGKVFAKESRKRVVIDRG >gi|333608009|gb|AFDH01000025.1| GENE 89 103353 - 104084 654 243 aa, chain + ## HITS:1 COG:BH1835 KEGG:ns NR:ns ## COG: BH1835 COG2186 # Protein_GI_number: 15614398 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus halodurans # 24 235 2 210 216 138 40.0 1e-32 MDVNTNGRPLKSHEWVLNDLRKQLEEGRLAVGDRLSSVVDLAAQYGVGRSTIREALSVLK AMGLLDIRQGGGTFVKALPSEPPHPGLLRPEWVGRAESLRHILEVRRVLETGCASLAAGS RTEADLAALSGTLRSMEEHLGDEALSEQADVRFHEQIAAATHNPVLADLMASLSQKLHDS MKDTRALWFYAERSSAERLLREHQAIFDAIRSRQPQEASARMEQHITKVEQVLGEKGADV TSR >gi|333608009|gb|AFDH01000025.1| GENE 90 104468 - 105562 834 364 aa, chain + ## HITS:1 COG:CAC3308_1 KEGG:ns NR:ns ## COG: CAC3308_1 COG0463 # Protein_GI_number: 15896551 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Clostridium acetobutylicum # 4 149 5 152 194 111 43.0 2e-24 MPTISLCMIVKNEEDHIGRCLASVADLVDEIVIVDTGSTDRTVPIVREYTDRVHHFRWID DFAAARNYSFSLAEKEYILWLDADDVFEEPDRIKLAALKKTLEPSVDAVNMVYNLAFDEF GQVSASIRRNRLVKRSCGFLWHGPVHEYLEVRGSVRTTDIAVTHRALHHDSGRNLRIYEN RLAQGETFSPRDLFYFANELKDHRMYNRAIHYYQEFLGTGNGWIEDNISACGRLADCFHA LGDEKRELDSVFRSFLYASPRAEFCCRLGYVFLRKKDCRTAAYWYEAALQAGKHTDSWAL THVACSTWLPHLQLCVCYDRLGEHELAHRHNETVLEYRPGDRQALANKIYLEGVLAGKEG TPAD >gi|333608009|gb|AFDH01000025.1| GENE 91 105786 - 107234 1496 482 aa, chain - ## HITS:1 COG:CC2473 KEGG:ns NR:ns ## COG: CC2473 COG0154 # Protein_GI_number: 16126712 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases # Organism: Caulobacter vibrioides # 34 481 33 491 497 305 43.0 2e-82 MVIFAEATIAGLQHAMEQGECTSFQLVRYYMERIAAFDQQGPGINSVLELNPDALHLAEA ADAQRRLGQVRGPLHGIPVLLKDNIQTADNMHTSAGSIALKDHYAGEDAFLVKKLREAGA IILGKANMTEWANFMADDMISGYSSRGGQVLNPYGADLYAGGSSTGSGASVAIDVTTVAV GTETSGSILSPAIHNSVVGIKPTLGRISRSGIIPLAHSQDTAGPMARTVADAAALLGVLC GYDPQDAATGSAAGLEEPDFTVHLDKNGLKGARIGVPRSEHLDPLTDEERELFESLLDEI RGAGAVIVDPVEIPSLEELSGHCSKVFYYEFKAGINAYLGRLPDGLPVHTLEELIAFNEA HADEALKYGQQVLIRSEATSGKLTEPEYLLHRLADLRLSRTEGIDCAMQRHQLDALLFPN TAGDEIAAKAGYPSIAVPGGYLRSGMPFGVMFTGGAFAEPVLIKLAYAFEQLRPRRKPPV LG >gi|333608009|gb|AFDH01000025.1| GENE 92 107418 - 108938 1258 506 aa, chain - ## HITS:1 COG:BS_yolJ KEGG:ns NR:ns ## COG: BS_yolJ COG0463 # Protein_GI_number: 16079204 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Bacillus subtilis # 129 506 50 419 422 145 28.0 2e-34 MVNADRDWLNKYRYNLPFFENIHKELLRSAEESRNPGPEQAFGEARAQAEPGTPLPSSES VHSAQPLSADGRMENLLRRVEERITLLEKVRECSDELVSLIGEEPSGMREEIAALSGSEY GELLEDLLRSGRASISVVIPVFNEERCIARCLDSVQGVADEIIVLDTGSTDGTVDVICSG YPHVRIELTEWKDDFAEIRNRLNGLATGDWIFHVDADEALIGDGAELRAFLRLFYDCPAE ALVVSPGIVNHDGQELTLTRRIYRREDGLRYYGVIHEDLRREMDERGGDLRHLMTSFTLS HDGYEPKVIQAKNKHERNIRLEEQMVAREPDNIRWHYFLAREKQEAGYPDHEVVEGIRKG LRLRGTRTEPDHFHLRSLLLLAGILDRQPQYNEPLNALAEEINALYPDCTDGLYYLLLHE YTDGTGNLVTRAESGLNQLKQLEHPYSLLHPRSDHVTRLIGEIFMAAGQYKRAFHLYSLI SDERILQDLRERLGGLQEEIAAFLEG >gi|333608009|gb|AFDH01000025.1| GENE 93 109041 - 109262 264 73 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|229136631|ref|ZP_04265311.1| ## NR: gi|229136631|ref|ZP_04265311.1| Transposase Tn3 [Bacillus cereus BDRD-ST196] Transposase Tn3 [Bacillus cereus BDRD-ST196] # 1 51 875 926 946 65 51.0 2e-09 MKTLKSNHSFTKLDETEMMNVNGGDWRDHARWTADFLRGLFSNPLGCGLGDVTGGNSKPA KGCSPYPAKNSNC >gi|333608009|gb|AFDH01000025.1| GENE 94 109450 - 111633 211 727 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|90020817|ref|YP_526644.1| ribosomal protein S16 [Saccharophagus degradans 2-40] # 473 708 6 233 318 85 28 2e-15 MSLSRKPVCIRQHDRKDCAPACLAAVARYYGLKMPLSLIREACGTDHTGTNAYGIVQGAE KLGFTAEALKGDAPALFAGFELPAIAHVIDKEVQHYIVIYKITGDKVLAADPAEGMRTYK TEEFLNLWTGVLILLTPGESFEPGSRVTGAAKRFFPLLRSNRKLLLPILAASLLVTAIGM AGAFYFQILLDTIMAEKLQGTLTLVSVGIIVLYAVQTLLDFARNHLFLYLAQRIDRGLVL QYYNHVISLPMSFFSSRKTGEITSRLTDASNVRDALSEASLHIAVDSLTLLIAAAVLYNQ NPLLFGLTLLLVPVYVLIMGGFRGFFDRYNRKMMNENAELTSYVIESIKGIETVKASTAQ REVKETARAKYEAFLATAFKYGLMNNVQSALKTALQLISGVVLLWIGARQVLEGEITAGQ LITFNVLLAYFLSPLQRLIDLQPVLQSAYVAASRLGEYMDLAAEKELSPDEAAVSRDALD LRGDLLIRHLSYRYGSRPLTLDDINLTIREGSSTALVGPSGSGKTSLLKLMMKFFEAEQG SIEINGHDLRDIPAGVLRSRIAYVPQETFFYHGTVYDNLCLGLDPKPSLEEVAEVCKQAQ IHDFIASLPQHYETVLEENGSNLSGGQRQRLSVARALMKKPHLLLMDEATSSLDAVTEKA VTSLVAGLGITTVMISHRLSGVRHCDRICVMDKGRIVEAGSHDELMRRGGAYSALWNSQF AEAQAAL >gi|333608009|gb|AFDH01000025.1| GENE 95 111875 - 111994 74 39 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MEISRFIPGTTELPGSEISGTELLGPEIRHLVPAPGVML >gi|333608009|gb|AFDH01000025.1| GENE 96 112129 - 112611 578 160 aa, chain + ## HITS:1 COG:BS_ywrC KEGG:ns NR:ns ## COG: BS_ywrC COG1522 # Protein_GI_number: 16080664 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 14 160 12 158 158 214 70.0 6e-56 MNTQEPPGTKSVGIDETDRKIIRALNANGRISYTDLAKDIGLSRVAVQGRIQALMDTGVI ERFTAVINPEKIGIGVSAFFNVEVEPKFLHQVADRLAEEPSVTSLYHMTGPSKLHMHGLF TNHQEMELFLKEKLYPLPGITSVDCQVLITRFKSRMGMRL >gi|333608009|gb|AFDH01000025.1| GENE 97 112613 - 113236 804 207 aa, chain + ## HITS:1 COG:BS_ywrB KEGG:ns NR:ns ## COG: BS_ywrB COG2059 # Protein_GI_number: 16080665 # Func_class: P Inorganic ion transport and metabolism # Function: Chromate transport protein ChrA # Organism: Bacillus subtilis # 10 195 5 190 197 218 60.0 4e-57 MEQASRGRKPYYELTSAMVKTGILGYGGGPSVIPLIRYEAVNHYGWMEDEEFGEILALAN ALPGPIATKIAAYLGYRQKGTPGAIVAVIAHILPSSVAMIALLSVVGYLSSSTVVQGMIA AVVPVVAVMIGLMAYEFAERAVKGLGKPAGFGFFALSLVMLEVIHIHAAIVIIAFLAYGA FHYKAVRRLRGKLGKSGTPDDGKEDGS >gi|333608009|gb|AFDH01000025.1| GENE 98 113236 - 113781 888 181 aa, chain + ## HITS:1 COG:BS_ywrA KEGG:ns NR:ns ## COG: BS_ywrA COG2059 # Protein_GI_number: 16080666 # Func_class: P Inorganic ion transport and metabolism # Function: Chromate transport protein ChrA # Organism: Bacillus subtilis # 7 176 6 175 178 197 64.0 1e-50 MEEWLNLFIGFFVANVLGYGGGPSSIPLVYQEVVTHYHWADDRQFSNILALGNTLPGPIA TKIAAYVGYDAAGWFGLAVAIAATVVPSAVALIVLLKLLQKHRQSSVVKGMTLLVQPVIA VMMVVLTWQMAEGSIQSIGIWQSLGIAAVAYWAMQRRKIHPAFVIIAAFVYGGVVIGHFG I >gi|333608009|gb|AFDH01000025.1| GENE 99 113960 - 114751 815 263 aa, chain - ## HITS:1 COG:SMc04145 KEGG:ns NR:ns ## COG: SMc04145 COG0451 # Protein_GI_number: 15963860 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Sinorhizobium meliloti # 1 255 1 252 261 169 39.0 4e-42 MRRKILITGASGRIGSALLDGLGSLDRYDITAADLEADEEAGVVRLDVTDADRLEELTKG VDTILHIAWAKDDEDFLGKVLPINVAGAYRVYEAARKNGVKRVIFASSNHATGFYKVGED VEVTDPYRPDSFYGLSKCTIELLGRLYADKYGISSFNMRIGNFPGDDRPHSERSAHIWIS SRDMVQLAERCIEADASMKYLVLYGTSANTGNYYDIGYLKELIGYAPQDDSAVLMEEARQ RRENIKEDETPYQGGSFVDKKPS >gi|333608009|gb|AFDH01000025.1| GENE 100 115459 - 115911 180 150 aa, chain + ## HITS:1 COG:BH0989 KEGG:ns NR:ns ## COG: BH0989 COG2207 # Protein_GI_number: 15613552 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Bacillus halodurans # 1 148 127 272 278 126 44.0 2e-29 MLHQNVHTLGGIGKLRVKELFLSIVHQVLVGCRYRENGHFPNKRVIEEAVAYINGHYMNP LTLSELAELHAMSPKRFSYFFHKYTGLRPIDYVIHYRMERASELLKAGHFPIRDIAVSVG YANQLYFSRVFKKKFGVSPSAYTHKIENHK >gi|333608009|gb|AFDH01000025.1| GENE 101 116065 - 117369 369 434 aa, chain + ## HITS:1 COG:PA4155 KEGG:ns NR:ns ## COG: PA4155 COG2141 # Protein_GI_number: 15599350 # Func_class: C Energy production and conversion # Function: Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases # Organism: Pseudomonas aeruginosa # 1 433 1 433 435 461 52.0 1e-129 MTTNRQLCIGLSLSATWMKGDGWRRPDSGVEKMDSIDYYIDLAKMAEKAKLDFLFKADYL YVSPQMLGDSANFGSPDPTMMFAAIARETKRIGLVTTVSTTFNPPYVVARQLQSLHWLSN GRAGWNIVTSIEGAENFGDSPMPSPQERYAKAMEFTDVVRKLWESFPHEAIVMDRESGLF SDKDKISSIHHSGEFFSVRGPLTLPAHKSGSIPLFQAGASDIGRNFASSVADAIFAAMPD LESGVELRNDLRRRAQEHGRNPDAIRVLPGLYFFLAETREEAHELHKAAHAHLSTERRHV SLKSVLGLDLSGFALDHRVTAAMLPDPDQPVRSRTHAELLRRYITNHQPTVEEVLARPEV VGSAHWVSVGTVEDVLNDIRERFEAGAIDGFIALPGGSEQSMELFFEKLMPQLVERGLFR SEYAGSTLRAHLGI >gi|333608009|gb|AFDH01000025.1| GENE 102 117539 - 118729 1113 396 aa, chain - ## HITS:1 COG:BS_yngD KEGG:ns NR:ns ## COG: BS_yngD COG2404 # Protein_GI_number: 16078881 # Func_class: R General function prediction only # Function: Predicted phosphohydrolase (DHH superfamily) # Organism: Bacillus subtilis # 1 393 1 392 399 507 66.0 1e-143 MIHLYTHNDLDGVGCGILAKCAFGEEAEVRYNSVEGLNVQVQKFLELARQGKVKHEYLYI TDLSVNEQNEQELNEYAQSGGKISMIDHHKTALHFNAYPWAAVTVAYPDGRLASATSLFY EHLMRNGFLKATPALDEFVELVRQYDTWEWEANGNAQAKRLNDLFYLVSIDEFEEKMVPR LLGSEPFAFDDFEEKILDMEESKIERYIRRKRREIVQTFIHDYCVGIVHAESYHSELGNE LGKEYPHLDYIAILNMGGKRVSFRTIHDHVDVSQVAGRYGGGGHAKASGCSLTDEVYPAY VAEPFSVEPIRTDAFRNYYNVKNSSFGTLYEGRSDTRFFLYPFDGKWKMESNGEEVDASY ETYEEAERFIKRHYAAWLVRDEVFVKFLMRHFRKET >gi|333608009|gb|AFDH01000025.1| GENE 103 118965 - 119204 331 79 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTAGFVIRCLNCGEEHKVVPGQRAYRDERIVFGTDNYGADQISCECGNALEEHSEYKGEA FHSEFVVKWRDLSGKEPVN >gi|333608009|gb|AFDH01000025.1| GENE 104 119226 - 120200 1078 324 aa, chain - ## HITS:1 COG:BH1376 KEGG:ns NR:ns ## COG: BH1376 COG0568 # Protein_GI_number: 15613939 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) # Organism: Bacillus halodurans # 24 322 74 372 372 437 81.0 1e-122 MTKDQQTGTEAGQFQPVLDPFMKPGKDDSREAEQGGQQDDLSLPHGIRMDDPVRMYLKEI GRVGLLSAEEEVNIAKRIEQGDEEAKRILAEANLRLVVSIARRYAGRGMLFLDLIQEGNM GLMKAVEKFDYTKGYKFSTYATWWIRQAITRSIADQARTIRIPVHMVETINKLSRVSREL LQDLGREPAPEEIAKEMELSVEKVREIMKIAQEPVSLETPVGEESDTNLGDFIEDQDAMA PADAAAFELLKVQLEDVLDTLSEREENVLRLRFGLDDGRTRTLEEVGQVFGVTRERIRQI EAKALRKLRHPSRSKRLKDFLDES >gi|333608009|gb|AFDH01000025.1| GENE 105 120543 - 120749 183 68 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MRELIFPSKQTGDSLLFTQSHHGHLFHRIKLVSILLIAVYPYYFYADFSFTWTFPTRLTD TAPSAYIC >gi|333608009|gb|AFDH01000025.1| GENE 106 121028 - 122035 883 335 aa, chain + ## HITS:1 COG:RSp1155_4 KEGG:ns NR:ns ## COG: RSp1155_4 COG2199 # Protein_GI_number: 17549376 # Func_class: T Signal transduction mechanisms # Function: FOG: GGDEF domain # Organism: Ralstonia solanacearum # 160 326 1 168 182 95 35.0 9e-20 MANKDKFDLLTKQINTTGTAVIACFIVLTLYNLRKKDFINTRKLRENEIHFRKLFAVNPY PLVLSRIRDNTVVQLNAEAAHFFQIPLDSGTPADASITYPSSADKDEILHELLQKDSIKN RICQLSVSPHSQKWVMINYELIIYDNETCVLAGITDITELKKAEAELARYASLDALTGVL NRGHGMALLQQELVQCREQGGELVVCFVDINNLKEVNDRYGHAEGDSLINKACEVLQRNL EPEDYLFRYGGDEFVLVFHTRPDAADLIWSRIREDLLILSREPDSPFPVSVSHGFFAVGP GTDMSAAEVIEAADKEMYIEKHSYKNNTCSPPDPI >gi|333608009|gb|AFDH01000025.1| GENE 107 122213 - 122542 379 109 aa, chain - ## HITS:1 COG:FN0589 KEGG:ns NR:ns ## COG: FN0589 COG1733 # Protein_GI_number: 19703924 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Fusobacterium nucleatum # 15 106 9 99 107 100 56.0 9e-22 MEEVKLSKGAPGTKCPIEAALGIIGSKWTFLIIRDLLIDGTVRFGELLKSLEGISPKTLS VRLRELEESGIVVRTVYPEVPPRVEYTLTDKGKQLESIFIELKVWGLKL >gi|333608009|gb|AFDH01000025.1| GENE 108 122754 - 123473 774 239 aa, chain + ## HITS:1 COG:mlr2047 KEGG:ns NR:ns ## COG: mlr2047 COG1028 # Protein_GI_number: 13471924 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Mesorhizobium loti # 1 238 1 241 242 167 44.0 1e-41 MTLAGKKIVIIGGSSGIGLETAALALEQGAEVVIASRSADKLRQARNTLGSSVSAYELDM ADEQAVKEFMTRDVKRLDHLVVTAAQTWSGPFLATETAKARQLFDSKFWGQYHAAKYAAP LLAEGGSITLFSGVVAFKPMAGSASLGAVNAAVASLGQTLALELAPLRVNVVSPGIIDTP SRAGMDDAARSAFYESVATRLPAKRVGRSRDVAESVLYLLHNSFVTGTVLHVEGGHLLT >gi|333608009|gb|AFDH01000025.1| GENE 109 123531 - 123797 283 88 aa, chain - ## HITS:1 COG:BS_yraD KEGG:ns NR:ns ## COG: BS_yraD COG5577 # Protein_GI_number: 16079752 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Spore coat protein # Organism: Bacillus subtilis # 1 88 11 98 99 105 53.0 2e-23 MHVMTDQVIAQDFLISAKSGIQNYAVAITETSTPEVKAVLHKHLREAVHTHERITNYMIE QGYYHPYDPVEQIKLDRQNVQATLNIPS >gi|333608009|gb|AFDH01000025.1| GENE 110 123839 - 124042 216 67 aa, chain - ## HITS:1 COG:CAC0614 KEGG:ns NR:ns ## COG: CAC0614 COG5577 # Protein_GI_number: 15893903 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Spore coat protein # Organism: Clostridium acetobutylicum # 1 62 1 62 76 58 53.0 3e-09 MTPTKLALHETLDLHEITAFKNVCLTKAKTMQALVSDDALKSILQQDVQVSSRQLQELDQ LLSRTSH >gi|333608009|gb|AFDH01000025.1| GENE 111 124077 - 125213 1143 378 aa, chain - ## HITS:1 COG:BS_adhB KEGG:ns NR:ns ## COG: BS_adhB COG1063 # Protein_GI_number: 16079750 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Threonine dehydrogenase and related Zn-dependent dehydrogenases # Organism: Bacillus subtilis # 1 378 1 378 378 625 76.0 1e-179 MKAVTYQGIKNVQVKEVKDPRIEKADDIIVKLTSTAICGSDLHLIHGMIPNFPQDYIIGH EPMGVVEEVGPEVTKLKKGDRVIVPFNVACGSCWYCNHELESQCDNSNPHGDMGAYFGYS ETAGGYAGGQAEYMRVPYGNFTPFKVPESSELPDEKLAPLADAMSTAYWSVDNSGVKSGD TVIILGCGPVGLLAQKAAWLKGAKRVIAVDYVDYRLEHAKRTNKVEIVNFEKEENIGNHL KEITQGGADVVIDAVGMDGKMTPLEFLATGLKLQGGAMGSLVIATQAVRKGGTIQITGVY GARYNGFPLGDIFQRNVNLRTGQAPVIHYMPYLYNLIEEGKLDPSDVFTHILPLSEAKKG YEVFDTKTDGCIKVLLKP >gi|333608009|gb|AFDH01000025.1| GENE 112 125233 - 125595 347 120 aa, chain - ## HITS:1 COG:BS_yraF KEGG:ns NR:ns ## COG: BS_yraF COG5577 # Protein_GI_number: 16079749 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Spore coat protein # Organism: Bacillus subtilis # 1 115 1 115 122 135 55.0 2e-32 MNNDYLDPVNSRGMPNQADAMFALDFLLTVKNGVRNCAFALSETATPEVRKMLMGQLEQA IQLHEEISKLMIDKKWLHPYNVSEQFQLDLTSAQMTVQIAGMKLFPEDTARLGLFADLEH >gi|333608009|gb|AFDH01000025.1| GENE 113 125631 - 125837 346 68 aa, chain - ## HITS:1 COG:no KEGG:BBR47_08030 NR:ns ## KEGG: BBR47_08030 # Name: yraG # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 1 68 1 68 81 81 63.0 1e-14 MDQKHLAPHETMEIHEMLNFKTVALTKSKFMQGIVFDRDLKALMEKDVQQSVQAIQQLQG LYAKAPVQ >gi|333608009|gb|AFDH01000025.1| GENE 114 125994 - 128576 3011 860 aa, chain - ## HITS:1 COG:CAC2367 KEGG:ns NR:ns ## COG: CAC2367 COG5492 # Protein_GI_number: 15895634 # Func_class: N Cell motility # Function: Bacterial surface proteins containing Ig-like domains # Organism: Clostridium acetobutylicum # 613 793 154 331 752 62 33.0 4e-09 MRAMRILALFLTLTLVSSSFGAMSAMALEVTSLVLNKNELSLEVGGTASLTATAVYDSGA TENVTVKTDWTSGSPEIASVYAGSVTAKKEGKAVITATHKGKTVIVNVTVSKHVRSLIKD VQTIDLRKGKSEQIKLTAYYDDGTNEDVTKKAEWNIDNGSVATVVNGLVTGQSSGTAIVS AKYNNQTVSVPVSIEIAKRVDPDKSQISMLLKDSEAITLIATYPDGTSEDVSDIAEWESD NPNVADVLKGKVTGYGPGKATIKASYGTKSASIKVDVDNAIKLDLGKETVLLKKNGTEQL NLKATYADGSSDDITARADWTSSDENIVSVVKGKLFANATGEVTVTAKYGTKTVSVVVDV DVPKRLEAEKEPLFLQTGKEEQIVLWATYADDTKEDVADEAKWTVDNEAVVSVTDGKVTA RKAGEANVTATYGGKTVTVKVSVDIPNTIKASVKTVNFQVGSYEKVTLNAIYSDGKVEDV TEKADWTSSAADIAEVRKGVITGVGTGAATVTAKYGTRTAVVQVSVGVLKTLTTGSKTTI SLKKAGTQVLDLTATYSDGTKEDVTKEAAWTSSNEKAATVDAGLVTGVASGESTITATFN NKTVTFKVQVDMADKLTANPSFLNFDLGENKLITLTSTDGSGTPKDVTKEAEWTSSSAAV ATVDNGLVTPVSRGKTTITAKYGGKTVTIPVEIGVVSTLEVDKRFVTTKSGSSVQIKVTA TLSDGSKKDVTSSVLWKSSNYKIADVSAGKVTGVSAGSTTVSATFGGKSISIPVDVDKLK YLQTDKVTVELKAGATANVKATATFEDLSEQDATVQALWKSSNIRVADVKDGIIRATGKG KATITVTYAKKSTKVYVTVN >gi|333608009|gb|AFDH01000025.1| GENE 115 129048 - 130082 1209 344 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_1434 NR:ns ## KEGG: GYMC10_1434 # Name: not_defined # Def: S-layer domain protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 32 191 47 201 400 67 32.0 6e-10 MKWSFWKKSALVAGTALVLVTAASPASAHWLYEDIDGVPWAQESLISTSQMRVIDGVSEK TFDPGAKVTGIQFVKMAVMASDPSYEPDLGSYAAWYGAYLNKAQAEIGLVDEAFSKTMLD PASRLEIVRVVSKLIQPEWRFKSVPDEDAVALCVKEGILQGRAEGDLALEAPVTRAEAAV LIDRVMEKTGKYGKRFDKPVVGVEGGAFVLNGLHLGQKAEEVSAILGTPFLKGQDELDGD AVEEYKNFYVAYYEGKTSRIMYKAVDEKLKSGDVELPGAAVFKGFDTTYYYLEQTEEILM AKDQFMYLGFADGNFYFHVDNGGIQPYNEAARKLNDLFEKHQNQ >gi|333608009|gb|AFDH01000025.1| GENE 116 130409 - 130645 298 78 aa, chain - ## HITS:1 COG:no KEGG:RBAM_034560 NR:ns ## KEGG: RBAM_034560 # Name: not_defined # Def: hypothetical protein # Organism: B.amyloliquefaciens # Pathway: not_defined # 12 78 1 67 67 73 49.0 2e-12 MDREEKGMKLNLRKADEMERYQTEKSAKIAFIFYTAALLVWGLYNFFSTGKTGWEFTILL LGNAIFLWSRVVYRRKMQ >gi|333608009|gb|AFDH01000025.1| GENE 117 130946 - 131545 702 199 aa, chain + ## HITS:1 COG:no KEGG:PPE_02014 NR:ns ## KEGG: PPE_02014 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 2 178 10 187 194 172 70.0 9e-42 MDKKIVGVFDTEREAIQAIDGLKQQGFHADDISVIAKDKQDSADILDETGTKAPEGVATG AATGGVLGGVTGLLAGIGALAIPGVGPFIAAGPIAATLTGAAVGAGAGGIVGGLVGMGIP EDEARQYDNYVNDGKILVLVDSDAERDAHVYDTFRTNRSLNASTYDDQVFRDTDTPAYDV NSGLPYNAPNDDIDRSRRL >gi|333608009|gb|AFDH01000025.1| GENE 118 131815 - 133557 1776 580 aa, chain - ## HITS:1 COG:BS_yuiE KEGG:ns NR:ns ## COG: BS_yuiE COG0260 # Protein_GI_number: 16080258 # Func_class: E Amino acid transport and metabolism # Function: Leucyl aminopeptidase # Organism: Bacillus subtilis # 104 572 28 486 500 299 39.0 1e-80 MRADYTTNTKISVTESGGWASAEADALLFFTTEGEDPGSLPDLPAELRAELDRLKRTGRF KGGAGEVTVLPAYGRLAAPYVIAAGLGAAPAGRDTLRLAAVQAAREAQRLGLGRLAVLLP EGAFPAEPPRGGTYAAPLAAQGAGGAGAAGGASVKSASASGDGVQAEPQGESGADARTAA EARPASQSASAADAEPAGATSSATTVFTVAEGLLLGAYRIATYAREAKPRQELAAAQLFV QRDALNGEALQAAVAAAEAYAVATNYARDLTNLPGNLLLPSDLAEEAEKLAGQFGIACEV LDEQAIVERGMGALAAVGLGSANPPRMITLSYDGDPSSGEVLGLVGKGVTFDTGGISIKP AGGMEEMISDMGGAAVLLGLLIVVGRLKPRINLRIVIPAAENMPSGTAMRPGDVITTLSG RTVEVLNTDAEGRLILADGVTYAIEKGATRLIDIATLTGAVLVSFADVATSAQTNDDAFL ASVLQASIQAGEKVWQLPNFPEYREMLRSTVADIKNAAAHKWAGAIMGGSFIEAFIEDKP WIHLDTGGTAWLWGDRGVDPKGGTGAMVRTLAEYICGAGV >gi|333608009|gb|AFDH01000025.1| GENE 119 133727 - 135085 1180 452 aa, chain - ## HITS:1 COG:BH1920 KEGG:ns NR:ns ## COG: BH1920 COG0642 # Protein_GI_number: 15614483 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Bacillus halodurans # 109 451 194 538 548 190 34.0 5e-48 MPDIRTMYLQVLQVLMQSGPEEARSYSSTLKPLISSMLPEEVTLLHDRCMRELTGPARPE DALLYYQQSFQILNEAISFCTSQSEQSGKEPSRRFTGRLMQDSSYQSSNSKYENVLQHMD SGIALFDQEGFLSFANVKLGQFLGLPRKSMIGRTFYELVRLRKLSRGMRKLLIKLHREMF VYRLPFQEVLDEKGQHFLVTAKYDEELDGDILISVKDVTDFKRIEQSVYYNDKLAMLGKI AASIAHEIRNPLTSIRGFIQLLQPELLRLGKQDYADIILSEIDRANDIIFEFLNSSKPTA PVKQKIQIASLIKEVVLLFESEALLKGCDIQLSESDPNLYVWVDVKQIKQVLLNIVKNAI EVMSDGQKEHGLIRIRTIKVDHQVWIYIEDNGRGMDQKTLSKLFDPFFTTKEDGTGLGLS VCYRIIKNHGGVIHVESEVGEGTSFRIQLPLN >gi|333608009|gb|AFDH01000025.1| GENE 120 135436 - 136740 1082 434 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_1315 NR:ns ## KEGG: Pjdr2_1315 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 1 334 1 348 438 97 26.0 1e-18 MSKGIVMELKGNSIIVMTEEGRFERISKKGRNCQVGQEIRYKSTRGFGRSQILVLTSGLT AAAIICFVFIGGLLNMGSQVKVAAYVTMDVNPSVELALDDEEIVREVRGLNQDGARMAKA LHVEGKPLTQAASVILDWLDQGPLAKGEGDIIISSTVVGNERKVSDVLLADKMEKQVTDH LLANHADLSKYAVAAFAAPPELRQEAGTHQLSTGKYAIYLNAKSMGTEISLDQLREMSIY TLAKQMGGMGKLYNRTQPINKDNLTNWLAMEKEGSWNKDNVALPGEEEKNQPVPSKTPVP TPTPSDNSAGNTANTGGKASGTKVTPVPTPTPKKENTYTGSGNADNAREEWLRQKVEREY KRAQEELKRKQEAQKEKEEKERKAREKEREKQKEKEKKDKNHEKDDDRDDRDSWKGGHSF RIPFKEGPVYYHIG >gi|333608009|gb|AFDH01000025.1| GENE 121 136733 - 137554 548 273 aa, chain - ## HITS:1 COG:BS_ykoZ KEGG:ns NR:ns ## COG: BS_ykoZ COG1191 # Protein_GI_number: 16078409 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit # Organism: Bacillus subtilis # 27 255 19 245 251 178 45.0 1e-44 MILVLFKKLFGSKRQSSHHQKNAPQPEEVVKKIQQGDLRLRNQFISDYQPFVIKVASRFC KRYIDPARDDEFSIALAAFNEAINQFSHDMGRSFLGFAETVMRRRLIDYLRKEQRFKGQI PYSAFDQEDEEDHYVNPIEIHQALEQYEKQKGIEERRGEIVEFNRNLAVFSIQFTDLVDA SPKHEDSRIMLFGIGKLLSEDPELMRLLLSKKQLPIKELLGKVSVSRKTLERNRKYLIAI ALIHTGSYPYLKEYLHIKEQSKQTFQERREAYE >gi|333608009|gb|AFDH01000025.1| GENE 122 137784 - 138884 808 366 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|329922860|ref|ZP_08278376.1| ## NR: gi|329922860|ref|ZP_08278376.1| conserved domain protein [Paenibacillus sp. HGF5] conserved domain protein [Paenibacillus sp. HGF5] # 4 358 6 366 373 69 23.0 4e-10 MFHKKWLVSAVAVSLLVSGSTFAASAAPASGEAENWDKPSTAKFQSYKIEHKLLYTKADV RWSGEQLDKFQNTDRYRQFFPAFHLQVQESVDTRAKLMVSNLPGAKFTRTKAGYTDGEEI KLSVLDTSSLTQNKPYTFYTAWLNLLEDHPTVSLSSLQRYSQPGGSLYDLSGPADLLHKE NFTNAEPLDMKYNRLGLPSGFDDLFKQYPHQKEPSATKVKSYALINSKEALEAFKKEAAR TLHNSFDSEKVQFAVTFTKPFTAQHLKQLEEKYELNLAQIYAAGTTANKEEYTVSWFDSD VETASLLRIPQAGFIHFNLTELEGTATVEGLNKLRLDLNPDVIEIAPLDEPAPTGIHWLN RKFLNQ >gi|333608009|gb|AFDH01000025.1| GENE 123 139033 - 139311 304 92 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_1313 NR:ns ## KEGG: Pjdr2_1313 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 1 88 50 136 138 125 68.0 7e-28 MAEYAHGDGAAEVDFIDYVEGKQGPAIYENCVNHEDEEPMEIVQNQIDMGLDLLSVAKSL GDSAWEDQLKKRLQVLSRRRSKLVKGRTPQSP >gi|333608009|gb|AFDH01000025.1| GENE 124 139777 - 139992 172 71 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTIIPIISRQIAFAKFEGQTGEFSVYYHTGKVENYTGFDLEDIQALWDSANRYDTLMRLT ESRRLPQTTPT >gi|333608009|gb|AFDH01000025.1| GENE 125 140237 - 140689 182 150 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MIQQQTVLFVYWSLSSRLASMIAEYGGTEAEQGLVSVRISGYGEGSGESVVYEVRTMPPA ENAGSAYIRTQGRKGLWLAELGMLIANDGFLPLLRSAPVRTGDGSGENPFPEEGRHSENN HPPFPLLPVDFGFYSTYTIYPPPKQEGEKP >gi|333608009|gb|AFDH01000025.1| GENE 126 140686 - 144213 1580 1175 aa, chain + ## HITS:1 COG:BH1415_2 KEGG:ns NR:ns ## COG: BH1415_2 COG0438 # Protein_GI_number: 15613978 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Bacillus halodurans # 771 1161 1 374 385 228 36.0 4e-59 MSISQPVPALLVFHAHLPYVYRPDGGLTLEEYWFHEAMCDVYLPFVDCMDRLLNGKVCSP VTLSVSPVLLSMWENPELQERTREILKRRVELGRKEKERLTDKPGPASLAYRYAGRYADM LALLDKIDGKMIPRLRLYADRGLIQLIPAAATHPFLPLFKTEEAAFAQLYTAVTEFRRYF GFAPSGIWLPECGYTPKLEPILLRLGLRFTILEAPDGKSGAGQGSAAPYVTPDGLQVFTR DAAASALVWSRDSGYPGHPDYREYYRDIGYELGRGTPAEQAYIRPYVLPDGTPAATGYKY CRITGAAGGGDGAGGKAPYDAGRAAELAAAHARHFLASLGAAVPRGSEATARGAAGVDAA DSAADWEAAVPTAQAAAGLASSVSAAAKRQPAEAFPASGLAGDAARRTQAACTAPEAEHT RASGCYAGEGGASRPAASASEARLLPPRPVAVCAFDLELFGHWWHEGPLWLETLLREGDL EQRRRYAASGSHSGPSLPDSEKQPVFLTPSLYEERYAFDKGTAPALSSWGRGGDARVWLN PATDWMYPLLHAAEEAMALAAARAARTDTAAGKAHQALAAEHDAISSSDPLSFHSPDSGP NRRDHENLSHTALTDRILRQAARELMLAQSSDWAFMIESGDMAGYAAERFHEHRNNFYQL LPILDDIDERQPDVLSPGKLELLHRMERSAPIFADVNWRAYLPRYLSETLADKKPSRAPA FAPAGLSPEEQTAAEERETGKPSAGSSQAKPPAANSFTAAPNTDKKASLRVLVLAWEFPP HLIGGLGRAVGDLASQLARDGHIVHVITCRRDDEASDSLWNGVHVHRVEVLQSSESPAFL DWVFRLNIAMILRVERLMEENQELRFDTLHAHDWLVYYAARDCRQALRLPLVVTLHATEH GRKLGRLDDPVSRKIHAAESSLAELADKLIVCSDSMAEEVTSLFNRKKSGVTVIPNGLPA SSDAENNREPHPVPACAGDSGYPQRPPSAKRRILYLGRLVPEKNIPLLLAALPYVLEQFP ETELIIAGTGPEEAFIGGLASPFGDRVRFTGFADEAAKARLLAEADVCAIPSLYEPFGIV ALEAMRAGVPLVASDTGGLAGLVEDGVDGFRLPPADPRAWAGKICLLLVDPELAALFTKR ASAKLRTCFNMKEIGTATTNVYQSAINCQRSTKTC >gi|333608009|gb|AFDH01000025.1| GENE 127 144287 - 146251 1984 654 aa, chain + ## HITS:1 COG:Ta0342 KEGG:ns NR:ns ## COG: Ta0342 COG3387 # Protein_GI_number: 16081473 # Func_class: G Carbohydrate transport and metabolism # Function: Glucoamylase and related glycosyl hydrolases # Organism: Thermoplasma acidophilum # 1 644 1 628 636 464 39.0 1e-130 MPRHFVVGNGKFLINLDEHSYMRDLYYPYVGQLNHIGGYHCRVGIWVDGAFSWLDAPEWQ FQRAYVEDSLVTDVKATHPGLGVTLRIQDGVHQREDIFLKRIQITNHHSAVKEVRVFFNQ DLVINETEVGDTAAYYPANHTVFHYKKDKYFMFNGSTGTDGIFQYTTGVKRFYNAEGTWR DAEDGHLMGNPISQGSVDSTISFRMYVPPSGDHTLYYWLSAGHTLEDVKKLDKYVKESHP GKLLDRVQIYWQRWVNKTERSFGDLSEEVIRLFKQSLLIVRTQTDVNGAIIAANDSDIMQ SNRDHYSYMWPRDGALVAYSMSMAGHQAMMEPFYRFCANVISPEGYLHHKYNPDGTVGSS WHPYVHNGGEQLPIQEDETALVLFALWQDYKKHGNLELVQSLYRDLIRKAARFMSTYIDQ ELSLPKPSYDLWEERYGIYTFTASAVYGGLIAAANFCNLFGDEERSSRYRHTAEKIKNGI LTHLWDEKEGRFARGLYQKDGTWVRDMTLESSVYGIFEFGVLPADDDRVVRTMQANKNGL SIKTPVGGVARYHHDYYFQRSQDVDQVPGNPWIICTLWIAEWEIECAKTLADLETPRQTL EWVVNHQMESGILPEQLDPYNGDPVSVAPLTWSHATFVLAVVKYLSKYEQLAGK >gi|333608009|gb|AFDH01000025.1| GENE 128 146554 - 146940 479 128 aa, chain - ## HITS:1 COG:SA0760 KEGG:ns NR:ns ## COG: SA0760 COG0509 # Protein_GI_number: 15926486 # Func_class: E Amino acid transport and metabolism # Function: Glycine cleavage system H protein (lipoate-binding) # Organism: Staphylococcus aureus N315 # 1 126 1 126 126 118 45.0 2e-27 MDIPQELLYTPNHEWVRVDGSRATIGLTDYAQMEIGMIVFAELPEEGEELQAGDLLGTME SVTAEADVFMPLSGTIVSTNRELVKNSHYINRFPYGSGWLIQIEMNKPEELEALWSAKKY AEVFGERL >gi|333608009|gb|AFDH01000025.1| GENE 129 147052 - 147600 397 182 aa, chain - ## HITS:1 COG:BS_ykuU KEGG:ns NR:ns ## COG: BS_ykuU COG0450 # Protein_GI_number: 16078486 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peroxiredoxin # Organism: Bacillus subtilis # 1 179 1 180 180 253 65.0 2e-67 MAERLVGKPAPAFTMETALGDGTDFGTASLSDYKGKWLVLFFYPLDFTFVCPTEITALSE AASTFKDLKTEILGVSVDSKHSHRAWINTAREDNGLGKLNFPLAADLTKSVARDYGVLIE EEGVALRGLFIIDPEGELKYQVVNHNDVGRSVEETLRVLQALQSGGLCPMNWKPGDKNLS VK >gi|333608009|gb|AFDH01000025.1| GENE 130 147906 - 148985 1361 359 aa, chain - ## HITS:1 COG:PA3118 KEGG:ns NR:ns ## COG: PA3118 COG0473 # Protein_GI_number: 15598314 # Func_class: C Energy production and conversion; E Amino acid transport and metabolism # Function: Isocitrate/isopropylmalate dehydrogenase # Organism: Pseudomonas aeruginosa # 5 358 3 358 360 417 59.0 1e-116 MSDVKKIAVIAGDGIGPEVVAEAEKVLKKTEELFGHRFETEHGLFGGIAIDEKGTPLPQE TLELCQRADAVLLGAVGGPKWDNNPKELRPETGLLGIRKALGLFSNIRPAVVFDCLKDAS TLKPEVLDGTDLIVVRELTGGIYFGEKFRRETENGQEAVDTCAYNVSEVERIARQAFEIA RTRSKKLASVDKANVLETSRLWRETVIRISADYPDVELEHVLVDNCAMQLLRRPSSFDVI VTENMFGDILSDEAAMLTGSIGMLSSASLGEGSFGLYEPVHGSAPDIAGQGISNPIATIL SVALMFRLTFGYHEAANAIERAVKEVLDAGHRTGDIAVDKSKAIGTKEMGDLIVAAIRK >gi|333608009|gb|AFDH01000025.1| GENE 131 149286 - 150491 1186 401 aa, chain - ## HITS:1 COG:BH1127 KEGG:ns NR:ns ## COG: BH1127 COG1167 # Protein_GI_number: 15613690 # Func_class: K Transcription; E Amino acid transport and metabolism # Function: Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs # Organism: Bacillus halodurans # 1 384 1 382 400 393 51.0 1e-109 MKYRFSKTLEAFSSSAVREILKLTQGKSIISFAGGLPAEEFFPVEAVKEAIGRVMEGGKS ALQYGLTEGYTPLRQSICNRMATKGMQVTPDDMLLTTGSQQSIDLLTRVYIDEGDVILVE RPTYLAAIQVFQARGAKIVSVRSDRHGMDLEDLAVQIKQHRPKMVYVNPSFSNPAGRVWS LERRKGLLAACRQNDVLILEDDPYGELKFGTTEIMPSIFSLDQHPEGSCVVYTSTFSKIV APALRTGWVMGDRAVIRSMAQAKQAADLHSSTLDQMTLFQLMEQFDMDAHIGLISVEYEK RMRTMVQVLQEKNWPGVHWNDPQGGMFLWLELPAHIDTQVLLAAAVQQGVAFVPGVSFFA DEPERNTMRLNYTHAGEAEIRLGLERLDAVLQPLLAAAPKV >gi|333608009|gb|AFDH01000025.1| GENE 132 150559 - 152106 1685 515 aa, chain - ## HITS:1 COG:BS_leuA KEGG:ns NR:ns ## COG: BS_leuA COG0119 # Protein_GI_number: 16079880 # Func_class: E Amino acid transport and metabolism # Function: Isopropylmalate/homocitrate/citramalate synthases # Organism: Bacillus subtilis # 1 497 1 499 518 553 57.0 1e-157 MRKIYVFDTTLRDGEQSPGVNLNMQEKVEIALQLEKLGVDRIEAGFPAASPGDLEGVASV ARAVRNATIIGLSRSREQDIDAAREALRHAQDPCLHLFLATSPIHRKHKLRMEKQQVLET AEAAIRYAKKYFDKIEFSPEDAGRTELDFLCEVTEMAIRAGATVVNIPDTVGFLNPSEFG NIFKTLKENVPGIEKIQLSAHCHDDLGMATANALAAVLNGADQIEGTINGIGERAGNTSI EEVAMALETRQEFFQAKTSLVLSEIYRTSRLVSKLTGMDVPGNKAIVGANAFAHESGIHQ DGMLKEKTTYEIMSPETIGLKESKLVLGKHSGRHAFREKLIDMGYDLSDEQVNAAFAKFK DLADKKKNVLDDDIRALLEEKLVSTPEVYVLDSLQVSYSNQAVPNATVRIHAEDGKVLEE SADGNGSVDAIYNAIDKTTGEEVELEDYTIKSVSYGKDALGEVHVILGQKGVSVQGRGIS TDILEASAKAYIDALNRLIEKRKTPTAKRSNVTLI >gi|333608009|gb|AFDH01000025.1| GENE 133 152156 - 153148 926 330 aa, chain - ## HITS:1 COG:BH3059 KEGG:ns NR:ns ## COG: BH3059 COG0059 # Protein_GI_number: 15615621 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Ketol-acid reductoisomerase # Organism: Bacillus halodurans # 3 329 2 328 340 432 67.0 1e-121 MAATMYYEKDADFASLQGKTIAIVGYGSQGHAQAQNLRDSGLNVIIGLRQGKSWNTAQND GFEVFTVEEAAARADVIQILMPDETQARVYKEAIEPNMKKGVALMFSHGFNIHFGQIKAP ADADVFLVAPKSPGHMVRRTYVEGFGVPGLIAIEQDATGNAKQIGLAYAKGIGCTRAGVI ETTFKEETETDLFGEQAVLCGGASELVKAGFETLVEAGYAPEMAYFECLHELKLIVDMMY EGGLSSMRSSISNTAEYGDYVTGPRIITAETKKAMKDVLTDIQQGKFARDFILENQSNNA FMNATRRNEAEHPLEQVGSQLRELMHWIKK >gi|333608009|gb|AFDH01000025.1| GENE 134 153370 - 153858 598 162 aa, chain - ## HITS:1 COG:MTH1443 KEGG:ns NR:ns ## COG: MTH1443 COG0440 # Protein_GI_number: 15679440 # Func_class: E Amino acid transport and metabolism # Function: Acetolactate synthase, small (regulatory) subunit # Organism: Methanothermobacter thermautotrophicus # 5 160 9 165 168 168 58.0 3e-42 MITKHTISILVNNQPGVLQRVSGLFGRRGYNIESITVGESEEAGLSRMVIVTEGDDNTLE QISKQLYKLIDVIKVIDLSKNPMVARELALIKVNSEPAQRPEILGIVDTFRAAVVDIGPS SLIVQTIGDSEKIDAMIELLRPYGIRELSRTGVTAMIRGAIK >gi|333608009|gb|AFDH01000025.1| GENE 135 153860 - 155602 1755 580 aa, chain - ## HITS:1 COG:BS_ilvB KEGG:ns NR:ns ## COG: BS_ilvB COG0028 # Protein_GI_number: 16079883 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] # Organism: Bacillus subtilis # 21 575 16 570 574 626 58.0 1e-179 MNVGTAKRSKEELMEAMRKPELINGSEILLRSLVLEGVECVFGYPGGSVLYIYDAMHGFS DFNHLLTRHEQGAIHAADGYARSTGNVGVCIATSGPGATNLVTGIATAFMDSVPLVVITG NVATTAIGTDAFQEADITGITMPITKHSYLVRDVNDLPRIIHEAFFIANTGRKGPVLIDI PKDVSAQTAMFHPASEVNIRGYNPTVHPNKLQVEKLIKAIEEAEQPLIIAGGGVVYSNAS KELLEFINKTRIPVTTTLLGLGGFPSAHELWVGMPGMHGTYTANQAIQNADLLISIGSRF DDRVTMKLDGFAPKAKKIAHIDIDPAEIGKNVKTDIPVVGDIRSVLEYANTKAKPAKSEN WIARLQENKRNFPLKYKDSDTVLKPQYVIEMINETTKGEAIVTTDVGQHQMWVAQYYKFQ HPRSWISSGGLGTMGFGFPSAIGAQMGNPDKLVVSINGDGGMQMCSQELAICAINNIPVK IVVINNQVLGMVRQWQEIIYDNRYSHIDLAGSPDFVKLAEAYGVKGLRATNKEEAQRAWQ EALDTPGPVLIDFVVAKHENVFPMVTQGSTISEMLMGEDD >gi|333608009|gb|AFDH01000025.1| GENE 136 156168 - 156527 512 119 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|192810279|ref|ZP_03038952.1| ribosomal protein L20 [Geobacillus sp. Y412MC10] # 1 119 1 119 119 201 83 2e-50 MARVKGGFTSRRRHKKVLKLAKGYFGSKHRLFKTANEQVMKSLLYAYRDRRTKKRDFRRL WIVRINAAARVNGLSYSKLMHGLKLAGIEVNRKILADLAVNDAKGFADLATAAKQKVNA >gi|333608009|gb|AFDH01000025.1| GENE 137 156572 - 156772 289 66 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|192810278|ref|ZP_03038951.1| ribosomal protein L35 [Geobacillus sp. Y412MC10] # 1 66 1 66 66 115 84 1e-24 MPKMKTHSSLKGRFKITGTGKVKRYKAYRNHLLSGKSGRQKRVLATNPVMAPGDVRRLKQ GLAQIK >gi|333608009|gb|AFDH01000025.1| GENE 138 156832 - 157332 432 166 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|167856598|ref|ZP_02479300.1| 50S ribosomal protein L35 [Haemophilus parasuis 29755] # 9 163 2 157 159 171 54 4e-41 MVNDEIRAKEVRLIGPESEQLGIKPIREALQMAIDANLDLVNVAPTAKPPVCRIMDYGKY RYEMQKKEKEARKNQKIVDIKEIRLSATIDEHDFQTKLRNAVKFLNDGDKVKASVRFRGR EIAHAENGRKVLQRLATETEEISSMERAPKLEGRSMIMILTPKVTT >gi|333608009|gb|AFDH01000025.1| GENE 139 157613 - 158842 1402 409 aa, chain - ## HITS:1 COG:CAC1691 KEGG:ns NR:ns ## COG: CAC1691 COG1215 # Protein_GI_number: 15894968 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases, probably involved in cell wall biogenesis # Organism: Clostridium acetobutylicum # 1 404 7 422 425 353 42.0 4e-97 MLDTILLVLQIVLVLFGAYQLFLTFFGWKRPKKKTQHPPQKSFAVLVAAHNEEEVVGALL ENLKQLDYPKELYDVFVICDNCTDSTADIVRSHGLYACERNNPNLRGKGYAIEWMLKELW KRPRQYDAVVMFDADNLVGHDYLRHMNDDLCSGSQVIQAYLDTKNPNDSWVTASYAISYY FANRFWQVPRTNLGLANYLGGTGMCFESNLLKQIGWGATSLVEDLEFSMRCVKLGVKPTM NYYAKVYDEKPLTFRASVKQRLRWMQGHFDVCRRYLFPLLWQGLKERSWTKIDAAFYSAN VYNYFFGSILSVAIWIKAIVPGGTDMNLYELAPIVNVLAISIYVMLPISLFIEKASGKTY KYLIAYPIFMLSWWPITVYAFFTQNNKQWSHTKHTRVIRLEEVQSKQVS >gi|333608009|gb|AFDH01000025.1| GENE 140 159256 - 160428 660 390 aa, chain - ## HITS:1 COG:BH2688 KEGG:ns NR:ns ## COG: BH2688 COG0438 # Protein_GI_number: 15615251 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Bacillus halodurans # 1 374 1 371 381 345 46.0 1e-94 MRVALFTDTFLPDVNGVAKTLGRWVRYLESRGAVCRVFAPAAGEAGTSGIRSVERFYSIP FSLYPDCRMAIPNPLLVGRMLKEFRPTLIHLATPFNLGLTGLHYGKKHRIPLVASYHTHF DQYLAHYRLQWMEPMLWKYLLWFHQNCVKIYVPSPSTGKILHTKGLTGIELWGRGIDTAE FRPHTDRRKVLHKHNLLPAKFVLLYVGRLAPEKGLDALVRAFANLPEVFRAKCALILAGD GPMRAELEKRLAPYPDVRFCGFVEGRELAELYAAADVFVFPSASETFGNVVLEAMASGTA VVGVNAGGVADNVRHGYTGLLCPPDDASALAAAVQRLYEAPELRRKLALEGRSHALTRSW DSIFATLYESYREVAGDAGGGARRAAGIVK >gi|333608009|gb|AFDH01000025.1| GENE 141 160770 - 161297 429 175 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|52081538|ref|YP_080329.1| ribosomal protein S2 [Bacillus licheniformis ATCC 14580] # 1 174 1 174 174 169 47 8e-41 MSKVVHWMHRHETRMFLYVNQRFRHTILDGILGTLTHLGGATATIAITLLLSLFGKGVWQ IAGIQALAALAISHIPVAIVKKLYPRRRPYLVVPNTRTGRNPLQDHSFPSGHTTAIFSVI VPFAAHMPVLGFVLIPLALLVALSRMYLGLHYPSDCLAGAVIGSGAAAASVALWP >gi|333608009|gb|AFDH01000025.1| GENE 142 161353 - 162489 968 378 aa, chain + ## HITS:1 COG:CAC2897 KEGG:ns NR:ns ## COG: CAC2897 COG0707 # Protein_GI_number: 15896150 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase # Organism: Clostridium acetobutylicum # 5 378 2 377 384 219 32.0 8e-57 MRKKRVLLLSEGFGAGHTQAAYALSENMRQLYPGIQTRVLELGAFLHPTLARWIFSAYRK TLHSQPKLYGKLYRFQYKKSLNPITQMALHRIFYAQTAQIITQLRPDAIVCTHPFPSIVV SRLKRAGLSVPLCTVITDYDVHGTWISPEVNKYLVSSDKVKTKLLHRGVAGDKIEITGIP VHPGFRQPHDKTEIRRRFELASIPTVLVMGGGWGLIGGDTVLDEMLRWRDRVQLIFCFGS NQKALAKCQEDPRFLHPHVKLLGFTNEVDKLMEVSDLLVTKPGGMTCTEGLAKGIPMLFH KPIPGQEEENLLFFTENGFGESILSEETIRLWFKGLSERGNEMRRMREDIRESCRNMFQT DYSQVIMTLIHKEEQQSV >gi|333608009|gb|AFDH01000025.1| GENE 143 162486 - 163217 815 243 aa, chain - ## HITS:1 COG:BS_ytmQ KEGG:ns NR:ns ## COG: BS_ytmQ COG0220 # Protein_GI_number: 16080042 # Func_class: R General function prediction only # Function: Predicted S-adenosylmethionine-dependent methyltransferase # Organism: Bacillus subtilis # 1 223 1 209 213 204 44.0 2e-52 MRLRGRKGIREAIEKQRDLIVLEPALYKGKWAEVFGNGNPIHVELGMGKGQFISEMSRRN PGINFIGVDMYDELIRRASEKVRIAHGIEESAVDVSLENIRLALFNIERLEEVFDENELE RIYLNFSDPWPKKKHARRRLTHAGFVHKYKHALNERGEIHFKTDSKSLFEFSLNSFADLD LRMRNISLDLHGGFEEGFNPDHVMTEYETKFAKQGMNIHRVEVVLGSRALAEHVERLKEE QQS >gi|333608009|gb|AFDH01000025.1| GENE 144 163383 - 163568 293 61 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLTLTRSGDLQGQETTGITLELTPKEAMILAGTANFAYDARAAAEARRKVRRQLDAVLIN R >gi|333608009|gb|AFDH01000025.1| GENE 145 163662 - 164258 688 198 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKKLRYATLAVALTSMLTVGAAHASTLGTGSTTGTTNTTVTGTTTPGTTMNGVNPNATAP DQLNRAYSTGRNAVTGTVGAVTGGVTGAVTGAVNGAATGAATGAATGTTSGVNTYGTGYN GNTGTYGTTGTVGTNGNRMMDRMSTTGTNNRGAYDTSTYRTYGTTRNNTNWGWLGLLGLV GLAGLGGRNRRENEIHNR >gi|333608009|gb|AFDH01000025.1| GENE 146 164364 - 164459 57 31 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFWATIGKVRFEKGVLKPHERNYNRASPVGG >gi|333608009|gb|AFDH01000025.1| GENE 147 164419 - 165387 1032 322 aa, chain + ## HITS:1 COG:BH3284 KEGG:ns NR:ns ## COG: BH3284 COG1242 # Protein_GI_number: 15615846 # Func_class: R General function prediction only # Function: Predicted Fe-S oxidoreductase # Organism: Bacillus halodurans # 8 311 13 316 325 503 73.0 1e-142 MNAITTEPLLWGDKRFHTWNYEMRRQFGEKVFKVMLDAGFTCPNRDGKIATGGCTFCSAR GSGDFAGRRRDDLVTQFNTIRDRQHQKWPDAKYIGYFQAYTNTYAPVDELREYYEVILQQ PGVVGLSIATRPDCLPDDVVEYLAELNERTYLWVEMGLQTIHESTSTLINRAHDTQCYTE AVAKLRKHNIRTCAHIIYGLPQETDDMMIETGKAVAAMDVQGIKIHLLHLMRKTPMVKQY EAGLLRFLEQDEYIKLIVDTLELLPPEMIVHRLTGDAPRDLLIGPMWSLKKWEVLNAIDA ELKRRDTWQGKLWTPATPAGPV >gi|333608009|gb|AFDH01000025.1| GENE 148 165400 - 166005 514 201 aa, chain + ## HITS:1 COG:lin1771 KEGG:ns NR:ns ## COG: lin1771 COG0500 # Protein_GI_number: 16800839 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Listeria innocua # 1 197 1 189 191 157 44.0 9e-39 MGFLSILSCAHKWIEERVRPGDTVVDATVGNGVDTLFLARLVGRVGRVYGFDIQPQALDT ARTRLERELDGSGGAQRVSLLLRSHADMADAVPDDCLGRTAAVMFNLGYLPGADPGVITV PASTLPALEAALLLLREGGILTIALYPGHDGGASEAQAVESWAAALPQEMWSVLCYRFIN SAARSPYLIGIEKKKPRGVLK >gi|333608009|gb|AFDH01000025.1| GENE 149 166002 - 166967 1171 321 aa, chain + ## HITS:1 COG:BS_yjdE KEGG:ns NR:ns ## COG: BS_yjdE COG1482 # Protein_GI_number: 16078267 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannose isomerase # Organism: Bacillus subtilis # 1 320 1 315 315 230 41.0 3e-60 MKPYPIHFQPDFKHRVWGGRALEEFGYEIPEGHVGEGWMIADHANGTSTVTNGELKGLGL DEVREKLGAEWFGTKGASAGNGRFPLLVKLLDCNDDLSVQVHPGNDYENLAQGELGKTEM WYVLDAKPGAKIIYGLKDGITRSEFQTAVQEDRILDTMMSVEAEKGDSFYIPSGTVHALG SGVLVAEIQQNSDTTYRLYDYNRPGLDGKPRELHIEDSLNVIAFGKAGATFMKTMDAAPN EWLELAASPYFVVEKGIVTAPWNLSTTPESFTLLIACEGSGSLEWADGSLAMKPGDCFLL PATLGGYTLSGSQTVLRSYLP >gi|333608009|gb|AFDH01000025.1| GENE 150 167095 - 167904 799 269 aa, chain - ## HITS:1 COG:BH2659 KEGG:ns NR:ns ## COG: BH2659 COG0561 # Protein_GI_number: 15615222 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Bacillus halodurans # 1 256 1 257 257 254 47.0 9e-68 MERAIVFFDIDGTLLDENKQIPASTRKAVRLLQERGVFTAIATGRVPSMFKDVREELGIS SYVSINGQYVLFEGREIYSNPMDPAKLAELVQAADEQGHPLAYCGHPETRVSSSHPHVKE SYDNLKIPCPEADPEFYKHSAVFQGHLFCDAEAEKLYAERYPHYQFIRWHEHALDVLPAG SSKAIGIQEMLKAVGIPNENCYAFGDGLNDIQMLTSVGTGIAMGNAAPEAKAAADVVTDS CSEDGILKGLVRVGLLPEEALENLGEHAR >gi|333608009|gb|AFDH01000025.1| GENE 151 168143 - 169120 1181 325 aa, chain + ## HITS:1 COG:BS_ykvZ KEGG:ns NR:ns ## COG: BS_ykvZ COG1609 # Protein_GI_number: 16078451 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 1 325 1 321 321 288 46.0 9e-78 MANIKDIARLAGVSVATVSRVLNDHPYVSEAKRAAVQEVVHRLNYSRNVNAVHLITGKTN MVGVVIPYLNLPYFNSIMEGIAQEALEANVHLLVSQTNYAADKETELLNMLKIKQIDGLL ICSRSLEWEVIEAYSQFGPIIACEYIESDRISSVHIDHYGSFRLAMQLLLEKGHTRIGYC LGRGHSFNSRNRRRAFSDALSSAGVPVREEWMFYQIYSIEDGAEVVRSILDMEERPTALL VAGDQVAAGIISEAVKNGLRVPEDLAIVSFDNHPIAQLFDITTIDNRLVEIGRTAFSLLL KRLQDPASPVEHRELPFRLIERATV >gi|333608009|gb|AFDH01000025.1| GENE 152 169473 - 171254 1846 593 aa, chain - ## HITS:1 COG:BH2952_1 KEGG:ns NR:ns ## COG: BH2952_1 COG1032 # Protein_GI_number: 15615514 # Func_class: C Energy production and conversion # Function: Fe-S oxidoreductase # Organism: Bacillus halodurans # 1 456 1 456 457 736 74.0 0 MNIVLATLNAKYIHTSLALRYLKAFSEPEFPIDIVEYTIKDPAMNIVSDLYGKNPDVLGF SCYIWNIEETLRVIRMIKKIRPDLTIVLGGPEVSYDTEEWMRTVPEVDFIVMGEGEETFK HFLQELSTTRKFHFVYGIAYRKGEEIILTPGRPKLDLNAIPSPHRFEEDLKDLGNRVVYF ETSRGCPFSCQFCLSSIEVGVRYFDMERTKSEILYLIANGAKLIKFVDRTFNIKRDYALE IFQFLIDNHQGCVFQFEITADIMRPEVLDFLAENAPPGIFRFEIGVQSTNDETNNLVKRR QNFAKLTRTVTKVKESGKIDQHLDLIAGLPEENYDSFRKTFNDVFALGPEELQLGFLKML RGTGLRIDAAKYGYIFMDQAPYEILGNDILPFTDLIRIKRVEDVLEKYWNAHRTDHTVND LIASEFSSAFDFFQEFGDYWEERGWQKIGHQLEDLFTRLHAFLTWRGTERMDVIEGLMKL DYFLNHKYKPRKIWWDFKLDKAEQSDYLKRAADRPDEVSGNFSELRMGEKDLHKHAVIEV IPFDLQRYLQDGSLDTSAESLLLAVYRPEAGGRPSVYSMPLGRASAASASAGN >gi|333608009|gb|AFDH01000025.1| GENE 153 171358 - 171618 328 86 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MILYQLTQWLQEHTSIRKAIQQEAGDPGELMQRKEQVERQLMEQAERWRNVYADVPALPA ADQFPSWSSETGAGWEDTEPEFDTPR >gi|333608009|gb|AFDH01000025.1| GENE 154 171833 - 172546 874 237 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_1517 NR:ns ## KEGG: Pjdr2_1517 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 33 89 33 89 197 67 52.0 4e-10 MKSKKPVFYLTGGILIGTLFSQTDVWAKPVIDYLLQAATYPVTVDGQTYNSPDLPLLNYE GSTYVPLKSLGDLLGASVTWNDSLKQAEILKTKPSAAKEDLSVAAKDYYGAVEQWTFDTL YQPDKGTLDEKGRGELLKQLETVYGPNLAARFFDYGYMKESDGSYLSRPGDHLPLRKLNR NIIATHEIAGGKTIVTIKGEIEYNLDGKTFTDRYKQQYTIDPLTLKIIDIAYLALPI >gi|333608009|gb|AFDH01000025.1| GENE 155 172645 - 173745 1217 366 aa, chain - ## HITS:1 COG:MTH1486 KEGG:ns NR:ns ## COG: MTH1486 COG0842 # Protein_GI_number: 15679483 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Methanothermobacter thermautotrophicus # 1 363 3 379 383 108 25.0 2e-23 MKAYLQLTLAQLRIFIRNKQVLLWSFLFPVFFMVMFGTFFGGGSSMSINGVVIDQDRSAQ SAQLVGALMKTPAMKLKQEEHTAPGLQKLKDGNLQMVVVIPAGYGNRLDAAVKGGEASSV NVYYDQTNMMTAELGKTVVAQVADGISKEKTAYKPAITVKAEGVQALKLSYIDFLVPGIV SMMIMSNNLNGVAGQIASWRERGILRRMQSTTLKSSTFIASQITARLLLNGLQAVIVLLI ASVIFGTKVNGSWGLLLLFVILGTLAFMSVGFIVASLAKTPESAGPIAGFISFPMLFLGG VFFSADSIPSFLQPVVNLIPITHLSTAMRQVMNVGADLTVLWPQALILGGWMVVAFAIAS FTFKWE >gi|333608009|gb|AFDH01000025.1| GENE 156 173742 - 174713 390 323 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|225088774|ref|YP_002660041.1| ribosomal protein S16 [gamma proteobacterium NOR5-3] # 1 315 1 307 312 154 33 3e-36 MPQTDGLSDEILIDVDGLVKTYGSFTAVNGVRFQVRKGEVFGLLGPNGAGKTTTIEMMEG LRKPDGGTARIAGYDTIRELRKVKEVIGVQLQSTSLFDLLKVREIVEMYASFYPKSVPVG PLLADMTLEEKAGDRVKHLSGGQKQRLAIAIALVNDPQVLFLDEPTTGLDPQARRTLWDI ILRLKEKGKTIVLSTHYMDEAHVLCDRICLIDKGQVVALDTPANLVRSLQSENAIEFRLP QAESASPRERTELTDTLRRLQGVKQVELARDTLVLYTDHLQQSLTGLIREAELRGWKLTD LLTRTATLEDVFIHMTGRSLREE >gi|333608009|gb|AFDH01000025.1| GENE 157 174920 - 175873 833 317 aa, chain + ## HITS:1 COG:BS_yjbO KEGG:ns NR:ns ## COG: BS_yjbO COG0564 # Protein_GI_number: 16078227 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthases, 23S RNA-specific # Organism: Bacillus subtilis # 60 304 25 271 283 147 36.0 3e-35 MRKQRPPFNSKTKPARPAAPKTDKEPTQFEIGQPAELMKFLLEKLANKGRNTVKGILSRG QVSVNGKKTTRHDHPLQPGDRVTVQWSVVTEEEKPIGLHILHEDEDLLVINKEAGLLSIS GGDEKELTAYWQLTEHVRRKDPKARIFVVHRLDRDTSGVMLFAKNEKTQQTLQTAWQEAV HERSYVALVERKVKKPEGTIVSWLKESKTLLMYSSPVDNGGQKAVTHYKVLQASSDYSLL EVQLETGRKNQIRVHMQDIGHPVVGDKKYGSVKNTIGRLGLHARVIAFEHPSTGQPMRFE TQIPGKFLRVFASKPTS >gi|333608009|gb|AFDH01000025.1| GENE 158 175886 - 176086 249 66 aa, chain + ## HITS:1 COG:MA1344 KEGG:ns NR:ns ## COG: MA1344 COG4895 # Protein_GI_number: 20090205 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Methanosarcina acetivorans str.C2A # 3 62 21 80 81 77 73.0 6e-15 MNGQSRKNIHAGLTVDIVLKQDQRTGKRTRGVVKDILTNSPNHPHGIKVRLTDGQVGRVQ EIVQEP >gi|333608009|gb|AFDH01000025.1| GENE 159 176153 - 176380 267 75 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSENQQTPQSAETQPAEGAEPRKVSLAEAMKQKMAQKKAAQAQANSQQKHQVTGNQMMKS QQTKKQNNQRRRMGV >gi|333608009|gb|AFDH01000025.1| GENE 160 176428 - 176505 62 25 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSLFLQEPAVNPPKLLLQHTSAGGS >gi|333608009|gb|AFDH01000025.1| GENE 161 176507 - 176827 424 106 aa, chain + ## HITS:1 COG:BS_yfjF KEGG:ns NR:ns ## COG: BS_yfjF COG1742 # Protein_GI_number: 16077879 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 1 105 4 108 109 142 76.0 1e-34 MSMLLFVIAGLAEIGGGYLVWLWLREGKPVGYGIAGSLVLVLYGIIPTLQAFPSFGRVYA AYGGVFVVLAVVWGWLVDKKTPDFYDWLGAAVCIIGVSIILWAPRT >gi|333608009|gb|AFDH01000025.1| GENE 162 176856 - 177251 412 131 aa, chain + ## HITS:1 COG:no KEGG:BCA_0466 NR:ns ## KEGG: BCA_0466 # Name: not_defined # Def: hypothetical protein # Organism: B.cereus_03BB102 # Pathway: not_defined # 1 122 1 122 123 130 54.0 2e-29 MNFLDSLVEQRIQEAIRNGDFDHLPGKGKPLVLEDWSAVPEELRLSYKIMKNSGFLPEEM QLRKDMITLEELLACCHDEEERGKLKKTLNAKKLRFNMLMEERSMNLSPALALYRDRIET KFSAEPDKPSE >gi|333608009|gb|AFDH01000025.1| GENE 163 177275 - 177628 431 117 aa, chain + ## HITS:1 COG:BS_ydbB KEGG:ns NR:ns ## COG: BS_ydbB COG0662 # Protein_GI_number: 16077508 # Func_class: G Carbohydrate transport and metabolism # Function: Mannose-6-phosphate isomerase # Organism: Bacillus subtilis # 6 111 5 110 113 147 65.0 3e-36 MNLTTQNLLELTRDIQERHVNFAVSDVNSHVLRIAVMTGNYRWHFHPDSDELFMVLEGEL FIDFEDGTTASLKANDTLTIPAGTVHRTRADVRTVNLCFEAKEAETVFVDEPAGQAK >gi|333608009|gb|AFDH01000025.1| GENE 164 177784 - 178605 211 273 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 25 268 7 238 242 85 29 2e-15 MHGNRPDSANEAAIRTKEGHAPVAIVTGVSRRIGIGAAICRALAAKGMDVLFTSWTAFDK GMPWGADEEGPDAILRELAESGVRCERLEIDQSDPEAAKRIVDETEKRLGFPSVLVNNAA YSVNDGYEKLDAATLDAHYAVNMRGTALLSVEFGRRFNRGSGGRIINLTSGQSLGPMRGE IAYAATKAAVEAMTVTLAAELAPKGMTVNAVNPGPTDTGWITEELRNGLAGQFPFGRIGR PEDAARLIAFLAGEEAEWITGQILHSEGGFRLR >gi|333608009|gb|AFDH01000025.1| GENE 165 179088 - 179753 582 221 aa, chain + ## HITS:1 COG:BS_ykvJ KEGG:ns NR:ns ## COG: BS_ykvJ COG0603 # Protein_GI_number: 16078436 # Func_class: R General function prediction only # Function: Predicted PP-loop superfamily ATPase # Organism: Bacillus subtilis # 1 215 1 215 219 353 75.0 2e-97 MKHEKAVVVFSGGQDSTTCLFWALKHFGEVETLTFDYGQRHKLEIECAAQIARELGVKNT VLDMSLLNQLAPNALTRADIEIEEKEGELPSTFVDGRNLLFLSFAGVYAKGAGARHLVTG VCETDFSGYPDCRDAFVKSLNVTLNLSMDYPFVIHTPLMWLNKAETWKLSDELGAFDFVR TKTLTCYNGIVGDGCGECPACKLRSAGLQNYLLEREGAETR >gi|333608009|gb|AFDH01000025.1| GENE 166 179750 - 180238 516 162 aa, chain + ## HITS:1 COG:TM0038 KEGG:ns NR:ns ## COG: TM0038 COG0720 # Protein_GI_number: 15642813 # Func_class: H Coenzyme transport and metabolism # Function: 6-pyruvoyl-tetrahydropterin synthase # Organism: Thermotoga maritima # 32 158 1 118 120 83 39.0 2e-16 MKTPGEFRIVENLQQYGQDIRHEQLRYHTKRVLVSKEFTFDAAHHLHAYEGKCKNLHGHT YKAVYGISGYVNEIGLTLDFGEIKDIWKTRIEPYLDHRYLNETLPPMNTTAENMVVWLYE QMETALQSDEMQAKARGGRVEFVRLYETPTSYAEARREWMSE >gi|333608009|gb|AFDH01000025.1| GENE 167 180235 - 181062 854 275 aa, chain + ## HITS:1 COG:SA0665 KEGG:ns NR:ns ## COG: SA0665 COG0602 # Protein_GI_number: 15926387 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Organic radical activating enzymes # Organism: Staphylococcus aureus N315 # 39 275 2 237 237 322 61.0 4e-88 MSASHTNAAVPSPPRTLPAAGKPADAAVSPPGKAAAGEATIPVLEIFGPTVQGEGMVIGR KTMFVRTAGCDYRCSWCDSAFTWDGSGAGDIRPLTAEAVWEELVRTGGSRFSHVTLSGGN PALLRSLGPLVKLLRAKGIRTAVETQGSRWQDWLTEIDEVTLSPKPPSSGMETDFAKLDD IVRRLNPDGISLKVVVFDERDFAFAREVHRRYPAVPFYLQAGNEDVRLADDDLLRGQLLR KYEWLVDLTMASEDLNDVRVLPQLHALLWGNKRGV >gi|333608009|gb|AFDH01000025.1| GENE 168 181254 - 181748 546 164 aa, chain + ## HITS:1 COG:SA0683 KEGG:ns NR:ns ## COG: SA0683 COG0780 # Protein_GI_number: 15926405 # Func_class: R General function prediction only # Function: Enzyme related to GTP cyclohydrolase I # Organism: Staphylococcus aureus N315 # 3 164 4 166 166 283 85.0 9e-77 MAGRNQEDLDLTLLGNQQTQYPFNYAPQVLESFDNKHPYRDYFVKFNCPEFTSLCPITGQ PDFATIYISYMPDAKMVESKSLKLYLFSFRNHGDFHEDCMNIIMNDLIKLMDPKYIEVWG KFTPRGGISIDPYCNYGRPGTKYEQMAEHRLMNHDLYPEKVDNR >gi|333608009|gb|AFDH01000025.1| GENE 169 181966 - 183498 1628 510 aa, chain + ## HITS:1 COG:mll2385_3 KEGG:ns NR:ns ## COG: mll2385_3 COG0642 # Protein_GI_number: 13472176 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Mesorhizobium loti # 199 471 22 308 354 263 56.0 4e-70 MDNIGDYFKSFFANISTLLTFTYLGSLAYKYVLYRVPVNWMKVLYILLSIAAGWLSMMYG ARLTPTVIFDLRFVPILAAPLFLSRPSHIMLIGIGIGLTRLSFGLNHAAWAGFGNMVILG VVTALTSELLKRTSLRQTARILLLILIVNLFNVADIAILGVYPVATYLIELAPLSGTAGL FFSFFFTFILHDFKADFLRREALNKTNRELAEQFRLAEERTAELQQIHDELEVKNEELVA ASRYKSEFLANMSHELRTPLNSMLILSQFLAENQNGTLSEEEIEFAGIIHSSGQDLLTLI NDILDLSKIEAGHMSIMPGEVNVSEVVEAMTRTFEPVAAQKGLYFHIRSTGVPDIIHTDE QRLQQILKNLLSNAFKFTQRGGVTLTFYVEMDAEGIQHPAAAIRDTGIGIRADKREQIFE AFYQADGTTSRKFGGTGLGLSISRQFARLLGGEIRLASEEGTGSTFTLLLPSSSLSGQEQ ELRQLADDAKLPRLTPLSSPLPEGSNRSSL >gi|333608009|gb|AFDH01000025.1| GENE 170 183613 - 183738 88 41 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MALWSIGSSKDAVGRVFKGRNQKSLLSDKERRLFFSELSRA >gi|333608009|gb|AFDH01000025.1| GENE 171 183924 - 185423 1230 499 aa, chain - ## HITS:1 COG:lin2920 KEGG:ns NR:ns ## COG: lin2920 COG0753 # Protein_GI_number: 16801979 # Func_class: P Inorganic ion transport and metabolism # Function: Catalase # Organism: Listeria innocua # 5 481 4 480 488 568 59.0 1e-161 MNPHRPYLTTNQGTPVADNQNSKTAGTHGPTLLEDYHLLEKLAHFDRERIPERVVHARGA GAFGVFRPYASMSEYTKATFLQDPSIETKVLVRFSTVIHPSGSPETLRDPRGFAVKFYTS EGNYDLVGNNLPVFFIRDALKFPDMVHSLKPAPHTNVQTPNHLWDFMSLSPESTHMLTWV FSDRGTPANYREMDGFGVHAFKWVNAESKVVYVKYTWKSLQGVRSLSRKEAEEQGGRDHN HATRDLYDAIEAGNYPEWELNVQILEPERLDQFSFDPLDPTKEWPEDLVPFVKVGRMTLN ENPKNFFAEVEQSAFAPSVLVPGIEPSEDKLLQGRLFSYPDTQRHRLGPNYMQIPVNCPY APVRNYQRDGQMAVRQDHSPINYEPNSYDHSPKEAGSTYAESENPLTGSTTRRKIEKTDD FTQAGERYRRITPEERANLIDNLVNDLKQTDMQIQLRAVCNFFRADVEYGTRLAEGLGID LSGFIPQGAGSGSGQMPPR >gi|333608009|gb|AFDH01000025.1| GENE 172 185681 - 186697 859 338 aa, chain + ## HITS:1 COG:lin1066 KEGG:ns NR:ns ## COG: lin1066 COG0463 # Protein_GI_number: 16800135 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Listeria innocua # 1 314 1 314 329 396 58.0 1e-110 MSSPILTIVVPCYNEEEVLPETVSRLSAVLDRLIQEKLVARESVMLLVDDGSKDRTWELI DQYSRSHDYVTGVKLARNAGHQNALLAGLMTARHTSDIVISIDADLQDDTDAIREFVLKY LEGAEIVYGIRSDRTTDTWFKKTTAESFYKLMLRLGVQIKNNHADYRLMSKRALDYLSRY KEVNVFLRGIVPLLGLRTAEVMYERKERFAGESKYPLRKMLSFALDGITSFSVKPIRMVT ITGFLLSIFSVFAGAYAIISKLWGTTASGWTSLILSVWFIGGVQLLALGLIGEYIGKIYR EVKQRPLYLIEKSIPAQQDYADPADFDRIPVGAGRARR >gi|333608009|gb|AFDH01000025.1| GENE 173 186983 - 187273 341 96 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_6292 NR:ns ## KEGG: GYMC10_6292 # Name: not_defined # Def: small acid soluble protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 18 92 1 75 75 75 56.0 4e-13 MARRRSRRAAVPGSERSLDKFKSQVMRDAGYNVSDDQPNLVKYEVARTLGVPLEPGNNGQ LRTEDAGKIGGEIGGRMVRELVRMAQKQLAERSGPK >gi|333608009|gb|AFDH01000025.1| GENE 174 187364 - 188050 401 228 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSGGKSEFDYEKEWERKFGFRSGEIPSFSSIFGGGETLFTELSKRISEDPENTVWLDQWL DKLLREAMPGYRIPEWMGTDWENEPAGGPADQSAQGGTPPRGGEKRRASGDQPAVAQLPA ANLFSGRKPVKGLAAGSKKRQTAKVKAAEPFAYSITEGAGGLMVIVQQPSGIRPGEIELA ADRSSIRLSGNRIGGKQIIRLFRPIRPGSCRMTREDGCLVIRADLARR >gi|333608009|gb|AFDH01000025.1| GENE 175 188210 - 188488 337 92 aa, chain - ## HITS:1 COG:no KEGG:PPE_01368 NR:ns ## KEGG: PPE_01368 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 6 67 63 125 171 75 60.0 8e-13 MSSTLRNDASKLVGQNIVAVRKDGSMVRGKLVRIQGDQLILEPQEGTAQTKAFVPLVLFD LLAIGTSPFVNGFGFGGGFGYGGGFGGPGFFW >gi|333608009|gb|AFDH01000025.1| GENE 176 188727 - 188951 335 74 aa, chain - ## HITS:1 COG:BH2488 KEGG:ns NR:ns ## COG: BH2488 COG4840 # Protein_GI_number: 15615051 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 1 73 1 73 73 65 46.0 3e-11 MDLAVWSERNVEYMFDEIKTKLRMATGGSIKASNFSQEQYEDLKDLYDLVMSKPNFSISE IDAITTELGKLRKA >gi|333608009|gb|AFDH01000025.1| GENE 177 189156 - 189557 477 133 aa, chain + ## HITS:1 COG:BS_yugU KEGG:ns NR:ns ## COG: BS_yugU COG0432 # Protein_GI_number: 16080180 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 1 131 11 141 142 185 64.0 2e-47 MLHTYDLVTRRRDEMVEITDIVARLVQESSLEDGTAIVYCPHTTAGITINENADPDVKRD VLMRLDEVFPWEHPRDRHAEGNTAAHLKAMTVGASQTVFIRGGRLQLGRWQGIYFCEFDG PRSRTFTVKLIRD >gi|333608009|gb|AFDH01000025.1| GENE 178 189538 - 190179 535 213 aa, chain - ## HITS:1 COG:CC0732 KEGG:ns NR:ns ## COG: CC0732 COG1309 # Protein_GI_number: 16124985 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Caulobacter vibrioides # 1 127 18 137 215 67 31.0 1e-11 MARKAVAQELSRERILEEARELFVTRGYRALTMRSIAKAMGYSHGALYYHFREKAELFNA LILEDFGILLQRQRQIIVESAVLGVPLLQKLMMEFIRFGLENPHHYEIMFMIRDEELRQY SRTEQAKCFDLFATVVRQVISGMPDKEDQEYRLPWNLFMSMHGFISHSIHYGQTYELVEQ LAEEHVQLLCSNMVSTAARSESSKVSLVNHESA >gi|333608009|gb|AFDH01000025.1| GENE 179 190214 - 190852 449 212 aa, chain - ## HITS:1 COG:BH3630 KEGG:ns NR:ns ## COG: BH3630 COG1739 # Protein_GI_number: 15616192 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus halodurans # 1 207 1 207 213 206 50.0 4e-53 MIASYRTVQKHGADEIIIKRSRFIGQALQVSSEEEALAFIAGVKKEHSMATHNCSAYMIG ERNEIQKQSDDGEPSGTAGKPILEVIRNMDLKNVAVVVTRYFGGIMLGAGGLIRAYTDGA VAGIQAAVPVYKVSHQELLAEIDYTWLGKVENELRNRNMRMGDTEFTDKVILRCYPLSAE ADSFADWFTDLTQGQGNIIRGEHTYIEHSELP >gi|333608009|gb|AFDH01000025.1| GENE 180 191049 - 192404 1679 451 aa, chain - ## HITS:1 COG:BH3343 KEGG:ns NR:ns ## COG: BH3343 COG0166 # Protein_GI_number: 15615905 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose-6-phosphate isomerase # Organism: Bacillus halodurans # 1 449 1 449 450 672 70.0 0 MTQKLQFDYSKALDFVAQHEIDYLAGPIRTAHDQLHNGTGAGSDYLGWIDLPVAYDKEEF GRIQKAAKQIQSDSEALVVIGIGGSYLGARAAIEMLSHSFYNLLDKDKRKTPAVYFVGQN ISSTYVTHLLQLLEGKDFSVNVISKSGTTTEPAIAFRIFRELLEKKYGKEAARKRIYATT DREMGALKQLANGEGYESFVIPDDVGGRYSVLTAVGLLPIAVAGIDIEEMMQGAADAREA FSSPELSENASYQYAAVRNALYRKGKTTEILVNYEPSLHYVSEWWKQLYGESEGKDNKGI FPAAVDFTTDLHSMGQFIQEGNRNLFETVLFVDQSAEEIVIGTDEENLDGLNFLSGKTMD FVNKKAFQGTMLAHTDGGVPNLIVTLPDTSAHTFGYMVYFFEKACGISGYLLGVNPFDQP GVEAYKKNMFALLGKPGYEEDKARLEARLNG >gi|333608009|gb|AFDH01000025.1| GENE 181 192766 - 193665 1169 299 aa, chain + ## HITS:1 COG:STM3248 KEGG:ns NR:ns ## COG: STM3248 COG2084 # Protein_GI_number: 16766546 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases # Organism: Salmonella typhimurium LT2 # 3 287 4 287 296 181 36.0 2e-45 MKQIGFIGLGTMGAPMALNLLRKGYAVTVYNRSADKAAELVQAGASLAATPAEAVSGAGV LFTMLSNDSAIESVFYGENGVLEKAGEGLTVIDSSTVSPALSQRLYADLGKRGAYFLDAP VTGSKPAAEAATLVFMVGGDRPVFDAQHALLSDLGSKVLYMGPSGSGSYTKLAHNTIVGI NAIGLMEGLSIATKAGLAPEQFLQIVQAGSGNSKQAELKGPKILERDFSNQFSLKLMLKD LLLASDLTGKFQLPAPMLHAATTVFQMGLSKGLGEEDLAAAIQCYEEWMNERVEKKGER >gi|333608009|gb|AFDH01000025.1| GENE 182 193764 - 193850 62 28 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNTRHSSIHSTGIAFGSIGVYRVLPHTV >gi|333608009|gb|AFDH01000025.1| GENE 183 194397 - 194714 357 105 aa, chain - ## HITS:1 COG:RSc2552 KEGG:ns NR:ns ## COG: RSc2552 COG3123 # Protein_GI_number: 17547271 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Ralstonia solanacearum # 5 102 21 118 119 85 44.0 2e-17 MSNFEGVTVVKKANVYFEGKVTSRAVLFADGTKKTLGIMLPGEYEFGTDSKEIMEILAGD LSVLLPGESDWTDIQGEGEFTVPANAKFKLKVRTVTDYCCSYIAE >gi|333608009|gb|AFDH01000025.1| GENE 184 194794 - 196815 2389 673 aa, chain - ## HITS:1 COG:BH2352 KEGG:ns NR:ns ## COG: BH2352 COG0021 # Protein_GI_number: 15614915 # Func_class: G Carbohydrate transport and metabolism # Function: Transketolase # Organism: Bacillus halodurans # 8 673 5 664 666 885 64.0 0 MSASNTPIQQLAVHTIRTLGIDAIEKAKSGHPGIVMGAAPMAYTLFAHQMTHNPANPTWI NRDRFVLSAGHGSMLLYAILHLTGYDLPMEEIKNFRQWGSLTPGHPEFGHTAGVDATTGP LGQGIGMAVGMAMAEAHLAGLYNREGYPVIDHYTYAICGDGDMMEGVSSEAVSLAATLKL GKLIMMYDSNDISLDGDLHVSFTENVQKRFEAYGWQVLRVEEQNDLEALNRAVEEAKADT TRPTLIEVKTTIGYGSPNKGGKGGHAGPHGSPLGLEEAKLTKEFYKWNYEEDFYVPEEVR EHYAAVKEKGIQAEQAWRKLFDDYRKAFPELAEQFELGESGKLPEGWDRDLPVYTPEDKA LATRAASGNALNAVAKNVPFFFGGSADLASSNNTEIKNAPIFNAENYAGRNIWFGVREFG MGAALNGISLHGGLRVYGGTFFVFSDYLRPSIRLAALMKQPVIYVFTHDSIGVGEDGPTH EPVEQLAALRVIPGMTVLRPADGNETSEAWRYVMEHNDGPYALILTRQNLPQLEGSAKSA RENFSKGAYVVSDAPNGKPDALILATGSEVQHGVAAQKLLAEEGIQVRVVSMPSWELFEK QSQEYKDSVLLPNVKKRLGVEMAYPLGWERYVGDEGSILGISTFGASAPGDLLIKEFGFT AENVAKRVKELLK >gi|333608009|gb|AFDH01000025.1| GENE 185 196967 - 197428 535 153 aa, chain + ## HITS:1 COG:no KEGG:BMQ_1361 NR:ns ## KEGG: BMQ_1361 # Name: not_defined # Def: hypothetical protein # Organism: B.megaterium_QM_B1551 # Pathway: not_defined # 16 139 5 133 144 83 41.0 3e-15 MSRPFFENGNMLVLRGFAFGLVPGAALALLFKAVEFFAGSRVYTLLLNVDFIPGLGSGQP EWFELTLHLAVSVLIGFLYAILLGRTGKPWLPGILLGISPIPLFVPLTQLAVSAKTPVLS DVTAMIWWIAGHLLYGVILAALGTKALQASKKE >gi|333608009|gb|AFDH01000025.1| GENE 186 197551 - 198438 951 295 aa, chain - ## HITS:1 COG:BS_ykkE KEGG:ns NR:ns ## COG: BS_ykkE COG0788 # Protein_GI_number: 16078376 # Func_class: F Nucleotide transport and metabolism # Function: Formyltetrahydrofolate hydrolase # Organism: Bacillus subtilis # 11 295 15 300 300 381 61.0 1e-106 MAAAKTSGAAGKQNRGRMLISCPDRPGIVAAVSKFLSEYGANIVQSDQYTMDPEGGMFFI RIEFDLTDLEQRKPQLEADFAGVAAEFSMDWSLSLASQRKRLAIFVSKEDHCLLELLWHW RAGDLDADIAMVVSNHPDMAPLVEPFGIPYHHIPVTPDTKAEVEKRHLELLEGQVDLIIL ARYMQIIPASFIKHYQNRIINIHHSFLPAFVGGKPYAQAHGRGVKLIGATAHYVTEELDG GPIIEQDVQRVSHRDNVDDLKRIGRHIERIVLARAVSWHTEDRILVHQNKTVVFS >gi|333608009|gb|AFDH01000025.1| GENE 187 198520 - 199647 1490 375 aa, chain - ## HITS:1 COG:BS_yqfS KEGG:ns NR:ns ## COG: BS_yqfS COG0648 # Protein_GI_number: 16079568 # Func_class: L Replication, recombination and repair # Function: Endonuclease IV # Organism: Bacillus subtilis # 1 281 1 281 297 334 60.0 2e-91 MIKIGSHVSFSDKGLLNAAREAVSYGSGTFMIYTGAPQNTRRKPIETQYIEEGREVMQEH GIGEIVVHAPYIINLGSYKENTYELAVQFLQDEIRRTDYLGVKNIVLHPGAFTDKDAEYG LARISEGLNEVLAGVKDTGVHIALETMAGKGTEMGRSFEELALIIDKVEDNGRLTVCLDT CHIHDAGYDVVGDLDGVLDQFDRVVGLDRIGVVHLNDSKNPRGASKDRHAPVGAGWIGFE AMNRVVHHEKLIGLPMILETPWIGKDPKTQRPMYEAEIALLSGTVLERFGESFAEDVERL AFFFEKKEVDPRGFVLQTWELLKTDAKAKKADGREPMERLYDMIAEEHLFPELTEEQINQ RLTAWFAGKDLLKSL >gi|333608009|gb|AFDH01000025.1| GENE 188 199797 - 200228 524 143 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_5225 NR:ns ## KEGG: GYMC10_5225 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 4 142 18 156 157 224 75.0 6e-58 MNNSLFMWFITFWPLVLIGLMAIGGYFMFRKFLKVLPKADGKSKLDWQNYYVEKSRHMWT DDSKAFLNKLVAPVPGPFRDIAKHSIAAKIGQIALEEEAAEVTREHCIKGYIIATPKRDY RSLMNFLEREKIDYTPYKHLINS >gi|333608009|gb|AFDH01000025.1| GENE 189 200256 - 200453 60 65 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MEALAPLADQLALFASGDRFIGAGPLAVLADPAALCAALTLRKKMTAPVPRGPSGFFGVY PDQTS >gi|333608009|gb|AFDH01000025.1| GENE 190 200366 - 200476 163 36 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVVEGDKAWKPWLRWLISSLYLLLGIVSLALGLWLF >gi|333608009|gb|AFDH01000025.1| GENE 191 200543 - 200761 198 72 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKALDLVYCIHCGSIVSRTQADHIFKTGFYRVSVPLASCKSCATPNSNTTGCHDLPHHGR LNEYETRLPLMA >gi|333608009|gb|AFDH01000025.1| GENE 192 200851 - 201384 362 177 aa, chain - ## HITS:1 COG:BH3707 KEGG:ns NR:ns ## COG: BH3707 COG5652 # Protein_GI_number: 15616269 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Bacillus halodurans # 7 156 2 136 146 61 29.0 7e-10 MRALGRNKMFRLLLVLAWMSFMFYLSSQPYQKQSLKPLLREHISELQLKKAVPAGSFQYG RSVVSVKRLGTYGYVEFFIRKTAHVVEYAILALLAGYWLGSLRLMSKRKQTGIMLAVCVI FAVTDEWHQKFTSHRTSMTEDVILDTCGALLGTAMYYFFLKILQKSRKNAPNHPKTS >gi|333608009|gb|AFDH01000025.1| GENE 193 201487 - 201660 208 57 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MQNPDMRQLLLELEQFVHRVEEQSEPVPTVKPYVDDLKQIMLKHVNQTEMSLLTTYK >gi|333608009|gb|AFDH01000025.1| GENE 194 201680 - 202843 977 387 aa, chain - ## HITS:1 COG:BS_yvfE KEGG:ns NR:ns ## COG: BS_yvfE COG0399 # Protein_GI_number: 16080476 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis # Organism: Bacillus subtilis # 5 278 1 274 301 388 66.0 1e-107 MAIPVNPKIYLSPPHMGEYEQQYVREAFETNWIAPLGPNVNAFEEELAAYTGAAGAAALS SGTSAIHLALKLVGICQGDRIFCSSLTFVASANPILYEGGIPVFIDSDPDTWNMSAGALR RALEEADREGNLPKAVIVVNLYGQSADMNPILTLCGKYDIPVIEDAAESLGATYEGKQSG TFGRFGVYSFNGNKIISTSGGGMLVSDDLEALEKARFWATQARDTARHYQHSEVGYNYRM SNVLAGIGRGQLRVLNDRIQARREVFGQYRRAFESIEGISFMPEADYGRSTRWLTAITVD ERVTGVSSTEIVDRLAAQNIEARPVWKPLHLQPLFEGCAYYPHEEEISVSDRLFSTGLCL PSGSSLTPADQNRVMDMVLHTIAIPNR >gi|333608009|gb|AFDH01000025.1| GENE 195 202849 - 203520 458 223 aa, chain - ## HITS:1 COG:ECs2831 KEGG:ns NR:ns ## COG: ECs2831 COG0110 # Protein_GI_number: 15832085 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Escherichia coli O157:H7 # 11 220 6 216 221 100 33.0 2e-21 MKPFRPLKLWIYGAGGQGRETVQLVSDINRLSSSWDILGILDESEQIQGKMVSGYPVLHP YTALAQTDWEETRLIFAIGSSRTKTVVAGKIEEAFPLVRYASLYHPTAVISESARISEGC IVAAHTLVSTDVRLGRHVLINYGATVGHDSAIGDYSSILPGARVSGHVQIGHAGDVGAGS VILPGLRIGSDAVIGAGAVVTRPLPGDCTVVGVPARPIKREKE >gi|333608009|gb|AFDH01000025.1| GENE 196 203517 - 204128 482 203 aa, chain - ## HITS:1 COG:BS_yvfC KEGG:ns NR:ns ## COG: BS_yvfC COG2148 # Protein_GI_number: 16080478 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sugar transferases involved in lipopolysaccharide synthesis # Organism: Bacillus subtilis # 1 194 3 196 202 260 63.0 1e-69 MKRTFDFLVALIALTILLPVIFLVAVLIRIKLGSPVLFKQTRPGLRGKPFAIFKFRTMTS KCDEHGRLLPDEVRLTRFGMLLRKLSLDELPQLLNVLRGELSLVGPRPLLMDYMNRYTSE QARRHDVRPGITGWAQVNGRNDLSWEQKFELDVWYVDHQSFLLDMKILWMTVIKVIKTEG VSRTGHVTMPEFQGYTSNGAVEK >gi|333608009|gb|AFDH01000025.1| GENE 197 204144 - 205454 1281 436 aa, chain - ## HITS:1 COG:SA0158 KEGG:ns NR:ns ## COG: SA0158 COG0677 # Protein_GI_number: 15925867 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetyl-D-mannosaminuronate dehydrogenase # Organism: Staphylococcus aureus N315 # 4 419 2 414 420 441 52.0 1e-123 MTKKICVIGLGYIGFPTSLVFARAGFEVIGVDVSERVVSALNAGEVHIEENGLEEIFQDV RTNYAFKAQRHPEPADTYIIAVPTPVNADHTANVDYVVSATEAVLPYLRKGNTVIVESTI PPRTIDDVVAPVLTKAGWRVGEEIYLAHCPERVLPGRIFQELVENNRIVGGYNPQSAEKA AEVYRAFVKGEIILTSATSAEMAKLMENTFRDVNIALANELAKVSASIGVDALEVIGLAN KHPRVNLHTPGPGVGGHCIAVDPYFIIEKAPELTPLMTASRAINNSMPAFVVEQTGKITP FHAGKRVAVFGITYKGNVDDIRESPALEVVHMLGENGFDVRVHDPHVLAELAPFPMFTAE EAVADAECLLILTDHNEFKALDLSLLSRMKSPVILDTKNCVESSHVPQSAGKLYNYGNLH ELSRVDTVAVPVSQLA >gi|333608009|gb|AFDH01000025.1| GENE 198 205514 - 206743 930 409 aa, chain - ## HITS:1 COG:alr1668 KEGG:ns NR:ns ## COG: alr1668 COG0438 # Protein_GI_number: 17229160 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Nostoc sp. PCC 7120 # 32 401 32 399 427 218 33.0 2e-56 MRILILHQYFLGDNDPGGSRFNQFVKHWNKMGHDITVVAGNVNYTTGQKEEKYRGKFVVK EQYSERTEIYRTYVSESYNKSFLGRLWAYFSFTFSSLLVCLFHIKRHDVMIVTSPPLFVG ITGIIVSWLKRMPMVFEVRDLWPESAIDTGVLKNSLLIKAAYLVEKLSYRFASKINVLTP AFRHKLIEEKGISTNKIIFVPNGADLDIFQPGPKENWVREKYGLENKFVVTYLGAHGVAN HLMSIIKVAEACRDIPDLLFMLVGDGMEKKSLQAYVDTNCIENVLFVPPQPKSAVPDFCR ASDVCTAVLKKVDTFKTVYPNKVFDYMSCAKPIFIGIDGVARALVEDSGSGYYVDPEDPE DFKEKIRLLMSNRELAESLGNNGYRYVSENFSRESLADRYQTELRNMAI >gi|333608009|gb|AFDH01000025.1| GENE 199 206740 - 208863 1315 707 aa, chain - ## HITS:1 COG:no KEGG:Nther_2527 NR:ns ## KEGG: Nther_2527 # Name: not_defined # Def: heparinase II/III family protein # Organism: N.thermophilus # Pathway: not_defined # 5 663 7 669 675 508 37.0 1e-142 MRNQLRMMQNMGLGWTLFRIKYELKKRAGFLEKEFPAVSMTEEEFLKRWSSHAASPDQVV REWRAQARPFFFHPDKLNGLKPVLQKALGASEQELLNQADRICEGTFTYFSRWNVHQGTP NWHWNPITNEESPRDLHWSKIPDLSGAFGDIKYIWELSRFSFAYTLVRAYALTGSSLYPE TFWNLFEDWVKNNPEERGVNYKCCQEMSLRVMAWIFALYAFANHSSSMDKRVFSLLKQVY CHTDHIDKHFDFALKSVKNNHTISEAAGLYTVGLLFPFFDRSGRWKKKGFRHLEAEGMWQ IYEDGSYLQHSMNYHRLVVQDYTWALRLAELNGETFSNKLKERLYKTFDFLYQFQDEATG RLPNYGMNDGALIHPLSQCEYLDYRPQLGAFYFILTGKRLYPDGPHEESLVWLAGESASS APRDSFPRAALKAYPEGGYYSIRMNGGSAMIRCGTYRHRPAQADMLHLDIWREGTNVICD AGTYSYNTDAEWSAYFMGTASHNTVMIGDDDQMEKGSRFIWYNWTKSHTKRAEAAADGMT LFEGEHYGYGPLIHRRAVIQSDAVIAVIDEIAGDFNGTERAISASWLSAARGAKATGEKG LIELETPTGPYFIETLDTQSSTFRIYHGDEKARRGWRSLYYGEKEPAYQIVRSLRSGKPV RLVTVLSPVAGQVTYDPGQNLLRIQERSLRLNPVGTGAILSQEKVTL >gi|333608009|gb|AFDH01000025.1| GENE 200 208856 - 211030 1592 724 aa, chain - ## HITS:1 COG:RSp1011_1 KEGG:ns NR:ns ## COG: RSp1011_1 COG1063 # Protein_GI_number: 17549232 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Threonine dehydrogenase and related Zn-dependent dehydrogenases # Organism: Ralstonia solanacearum # 1 367 1 367 397 526 68.0 1e-149 MNQILQNLKTGATEIADIPCPQVRTGHLLIQTRMSVVSAGTERMLVEFGKANLLEKAKQQ PDKVKQVMDKIKTDGLAPTLEAVRTKLDQPLALGYSNVGTVVEVGRGVEGFAVGDRVISN GPHAEIVHVPKQLCAKIPDGVDDEEAAFTVIASIGLQGIRLANPTLGETFVVTGLGLIGL ITVQLLRAHGCRVLGADFDPGKLQIAKSLGAEIVDLSKGEDPLSAARTFSKGRGVDGVLI TASTKSSEPVHQAAHMCRKRGRIVLVGVTGLELSRADFYEKELSFQVSCSYGPGRYDPEY EEKGQDYPVGFVRWTEQRNFEAILDMLADGKLDLKSLITHRFPIGQAVEAYEVLGQGKSS LGIILHYDPKQNVQALLNRKTVELALAPADEARTGEASVGIIGAGNYTNQVLLPALKQTK ASLHTIASSGGVNGLHVGRRHGFVQTTTDTGAMLADPAINTIFVTTRHNTHARYAEEAIK AGKHVFVEKPLCLNRNELQDIKNLRLQPKQILMVGFNRRFSPFTVKMKQLLDTVKEPKTL IMTVNAGDIPAEHWTQDPEVGGGRIIGEACHFVDTLRFLVGHPITEVTSHTVGRQPGVKI IEDKATITLRFEDGSLGTVHYFANGHKSFPKERIEVFAAGKILEMNNFKELRGYGWNGFT KMKLWSQDKGHKQEMKAFVDAVVTGSGSPIPLSEIYEVTEACLDIVEQLREQERQQQRRQ AEYA >gi|333608009|gb|AFDH01000025.1| GENE 201 211083 - 212237 839 384 aa, chain - ## HITS:1 COG:CAC2911 KEGG:ns NR:ns ## COG: CAC2911 COG0438 # Protein_GI_number: 15896164 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Clostridium acetobutylicum # 1 377 1 372 374 106 24.0 7e-23 MRIAINTLSVLPNRNGGGEVFIKNLVRHLIANDKINTYVLLVNKRNRSIFGEIEEHVQFA EAHEITSKPHFRILYESVYLPFRLKALDIDVLVGPADTLPLVNFTKTVLVIQNIKYFQKE QEQRPANVLGRIKQIYFGNLTPRSIIAADRVIAVSEETSRNIVSFSDKLEACESKISIIY EGVHHSFGTGGFPVADGDILCVSSFAKHKNIDKLVHLYMHLKETRHIRNKLRIVGNKDHE EARRLENIIRERNMAEHIIFEGFVPNEELPRYYHQASIFITLSSLESFGLPIVEAMTCGV PVLVNDASVMPEIINGHGILLTDVEDIEKTALQVYELLSDKDKLEHYSKLSLERARDFSW DTAARQYIKVFESLKSSRIQVQAQ >gi|333608009|gb|AFDH01000025.1| GENE 202 212259 - 213461 337 400 aa, chain - ## HITS:1 COG:SA0152 KEGG:ns NR:ns ## COG: SA0152 COG0438 # Protein_GI_number: 15925861 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Staphylococcus aureus N315 # 85 386 79 369 369 63 25.0 7e-10 MGIHPVNPTEEGIMSAKVLMPVFNEIDYDGRVQRAAEAIGQNFDVTVCSVDSNHPYHNAL FKTRLWKRPARLKKLHFVLFSLWFIIYSIKSKPAVIYAHDYFMAFPGWIASKLTGSVYVY DAHELIIPDQGEELGKRQRFFFYLEKWVVHRADKIIAANEERARLMQDFYQLTTSPLVVR NIPPAAKHFIKEEQAAVREDTEPDFKLVYQGDMSLERGLLKFLLAFKYLPSPYKLFLIGG GTDLPRIKELVVTEGLQESVHIIGKVTRDKLQAMLPSFDLGIISYPYKGLNNIYCAPNKL YEYTQAGLAVIATDQPPLKHYIETYRLGAVVAVDEDRPNAIPIKIAESIKEIAKNLPLYQ TNLGRFVEEHNWDNEKEKLISEFAKFNLSHRNIEKEQRTG >gi|333608009|gb|AFDH01000025.1| GENE 203 213633 - 214613 415 326 aa, chain - ## HITS:1 COG:no KEGG:BPUM_3206 NR:ns ## KEGG: BPUM_3206 # Name: not_defined # Def: hypothetical protein # Organism: B.pumilus # Pathway: not_defined # 49 324 128 416 485 106 30.0 2e-21 MIYLTVCLALFSLYGTWLITLLVYGYYIALRLITSKNQPQIHTVAKIGLIFFIGWLLYAV IQMEWIIMTENTIKYVKNLVYGVGLVILFSLHVQTFKKLITVYNAWLFSLVLMIGIGWWE VLTGNHLPKSGALQYQLDEVATAAFYNPNDFAFFLIVSLPVLFFSISDKNVGMKAFSWLI MLSSVYFIYLAQARMIYILLIGMIFLYMGYLIFYRKIKIVLSIIAGVLVFCLAFLKQLTD FWQQIISLKGDDGSVEVRRVLTADAWNIAQNNIFGVGAGNIEYYLDQFGTNVGRIVNVHN WWIEILANYGIFVFSGYVLFMVFLYS >gi|333608009|gb|AFDH01000025.1| GENE 204 214783 - 215973 330 396 aa, chain - ## HITS:1 COG:MA0798 KEGG:ns NR:ns ## COG: MA0798 COG0438 # Protein_GI_number: 20089682 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Methanosarcina acetivorans str.C2A # 41 382 31 374 376 95 27.0 2e-19 MKIFILSDYPSREKPTYYSFIKSRVEAIKGVCELSVIKVDINEKNRNVHEIIQEDGYRMI LLKIKKSNLPRVRLFLYNSLVKKVFEQLIKEEQPDLIHVHFSSYYSWIVADTVRKLHIPF CITEHATFFEHRVNTFYFGRKIKMALQEADMVFAVSRSLRDTMLKYISRPIEVKHNIVNT AKFSLRDGKQHEEKQPKQALNILTVGSFELNDKKGYEILIKALAKLKEKGIPFQCKIIGE GPNKDNLLTLRDEHGITENVDFPGSVANDKLQEFYWEADFFVSSSRTETFGVVLIEAMSC GLPVVATRSGGPEDFVDDSVGLLVANESVDALCEGMLLMAARYRTYDSSIIRQTIENRFS ADRYKEQMQGIYASLIDTNKKHRDYSLSLKHTYENR >gi|333608009|gb|AFDH01000025.1| GENE 205 215977 - 217443 546 488 aa, chain - ## HITS:1 COG:wzxC KEGG:ns NR:ns ## COG: wzxC COG2244 # Protein_GI_number: 16129986 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Escherichia coli K12 # 1 482 1 482 492 318 36.0 1e-86 MSLRQQALNGGKWTAISTLSIVLLQMAQIAVISRFLDAKAFGLMGMIMIIVGFAQSFTDM GISSAIIQRKETTRNELSSLYWLNIATGLVAGFVVWMTKEPIAFFYKSPELADLLVWSSF LFPIIASGQQFQVLLQKELRFKVISQLSILSMLAGTVISISAAYFGMGVFALVLGQLSTS AVNSILLITLSWKKWKPQMHFRRSDLKGYLSFGMFQMGDRTVTYFNNNLDKIIIGRFLGA EALGYYSIAFNLIIIPLIRINPIVNRVAFPIFSKIQDNREQMKKGYMKVINTLSLVNLPL YFGLIATAPLFIPIMFGAQWGPSILITQILCGVGILRSIANPVGSLVMATGKVGRGFLYN SFKTVLQIPVIIFGAYAGGVIGVAVAFLSLKSVYFITNYLVMLKTMLGPCFIDLLRSLRE PLYASVIMCIGVYLSGLVTTDYLSAGIALAIQILTGIAVYAVTILVYSPDLLHKIKGKLG NSRIKEGA >gi|333608009|gb|AFDH01000025.1| GENE 206 217470 - 219320 771 616 aa, chain - ## HITS:1 COG:BH3718 KEGG:ns NR:ns ## COG: BH3718 COG1086 # Protein_GI_number: 15616280 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Predicted nucleoside-diphosphate sugar epimerases # Organism: Bacillus halodurans # 1 569 1 566 608 596 53.0 1e-170 MSYRKRFIPLFSMDFLIALGSVYVAYMLRFDGDLPVIYIKQMIIYMTVTVFFSVVSMSFF KLYNRIWQYASVGEMLSIFRAVVVSSSLSYIVSYFISGIGVPISIFLGTFQSMLFLMGGA RFAWRLFRDNYYKQKQGQHKALIIGAGDCGTIIARELKHNSASQMYPIAFIDDDLLKHKH QIYGLPVLGNREAIIDVTEAHDISDIVIAIPSATKKQITEIIEICKKTKAKLKIIPKLSD LIHGKVSIQEIRDVDVEDLLGRDPVKVDLHGIADYLSDKSVLVTGAGGSIGSELCRQIAS FNPSKLLLLGHGENSIYAIEMELSRLFPKIKLGTIIADIQDQKRLETIFKEFLPQVVFHA AAHKHVPLMEKNPTEAIKNNVLGTRNVADCADKFGSERFVLISTDKAVNPTSVMGTTKRI AEMYIQSLNMTSKTIFAAVRFGNVLGSRGSVIPQFKQQIAHGGPVTVTHPEMIRYFMTIP EAVQLVIQAGAIAQGGEVFILDMGEPVKILNLAKDLIRLSGFVPNEDIAIQYTGMRPGEK LYEELLTSEEGLTSTLHNRIFIGRPANLNREHIQFEVKKLEKLLGDSVDDIRSVLQHIVP TYNRPSNQEAKELTLV >gi|333608009|gb|AFDH01000025.1| GENE 207 219359 - 220246 452 295 aa, chain - ## HITS:1 COG:BH3717 KEGG:ns NR:ns ## COG: BH3717 COG1210 # Protein_GI_number: 15616279 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose pyrophosphorylase # Organism: Bacillus halodurans # 1 289 1 289 293 396 68.0 1e-110 MHKVRKAIIPAAGLGTRFLPATKAMPKEMLPIVDKPTIQYIVEEAVKSGIEDILIVTGKN KRSIEDHFDNAFDLEQNLMEKGKFDLLKEVQLSAKVEIHYIRQKFPKGLGHAVWCARKFI GNEPFAVLLGDDIVEGKTPCLKQLIGQFERTGRSIIGVQPVPAEEIHRYGVIGSKETEGR LLEVNQLIEKPTKEQAPSNFAIMGRYILTPEIFDLLENQEQGANGEVQLTDAIQALNEFQ QVYAYHFEGIRYDVGEKLGYILTTLDFALRNNELRTPLLNALEEILQREAKPQNV >gi|333608009|gb|AFDH01000025.1| GENE 208 220494 - 221186 151 230 aa, chain - ## HITS:1 COG:BH3668 KEGG:ns NR:ns ## COG: BH3668 COG0489 # Protein_GI_number: 15616230 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Bacillus halodurans # 11 229 17 233 235 197 49.0 2e-50 MLASTNNSKVLIADVNPKSQISEAYRVLRTNIQYSSIDKEITTILVTSAQPAEGKSTTVS NLAITYAQEEKNVLLIDADLRKPTMHKLFGISNRSGLTNLLLGEAPVREVAIPSHLPNLY LIPSGPSTPNPAEMLASKRMTQFIEQAKAEYDIVLIDSPPILAVTDAQILATKCEGVILV LNHGKVKREVAKRAVDRLEHVGVKPLGVVINNKTNTKTSSSYYSYYGESK >gi|333608009|gb|AFDH01000025.1| GENE 209 221167 - 221925 584 252 aa, chain - ## HITS:1 COG:BS_ywqC KEGG:ns NR:ns ## COG: BS_ywqC COG3944 # Protein_GI_number: 16080679 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Capsular polysaccharide biosynthesis protein # Organism: Bacillus subtilis # 3 224 5 223 248 143 40.0 3e-34 MESGLNQYIQILRKRIWLIIITVFVVTVMSGIISYFFIDKQYAASTKLVVNKSSSYQGYD ILDYNAVNTNIMLVNTYKEIIKTPAIMEKVASRFTGEGLTSDMLAGMTKVTSIADTQVMT ITATADNYATAAKLANAVSDVFKAEISGIMKVDNVTILNEAKTTDNVGPVTPNIKLNVAA AFIVSLLISVGLVFLIEHLDDTVKTEKDVEKFLGVPTLAVISKIKTADLKNNAPSEPHKK MAGETAYAGVNQ >gi|333608009|gb|AFDH01000025.1| GENE 210 221980 - 222273 129 97 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MEKRYHRHADTEIWETEGDFLVVHTLHQSITKLNEVGGYIWSLLDAPKTLEELVMELTKE YELTTDQGLNDVNVFLHDLSQYGLITTCTGNLEVAKS >gi|333608009|gb|AFDH01000025.1| GENE 211 222289 - 223398 175 369 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_5349 NR:ns ## KEGG: GYMC10_5349 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 5 268 7 271 350 148 32.0 4e-34 MTQPLIRFMNDLYVVHGAFSFTEEEYGQIAEDLDLFSITAQVYHMLKEKGRLGELPLFLQ DRLKRKAEATLFQNLLLKTETDRLLRLFEEAELSVMLLKGVHFAETYFGHIGARGTTDID LLVEPDHLNKAIEIVESAGYGIQETYGSDHHIVLQKTNAQRIQIDVEVHWALARNELYKI DHKSFWLRSSPLSDFSYVRQLSPEDVFYMICLHGAQHYMISPRYSLDILHLTQIKPQIFD WDVIYRRMEAEHTRNRIILACTETKSLFKNCCMDERFIRKGSAGWEYREMRAAATENKRI RYYFKTFFFRLKSIDHWSYIGLLLKKMIIPSASKNVHTKASSKAGVYQIYRYRWRILRST IKRIFLTSK >gi|333608009|gb|AFDH01000025.1| GENE 212 223663 - 224454 755 263 aa, chain - ## HITS:1 COG:BS_ywqE KEGG:ns NR:ns ## COG: BS_ywqE COG4464 # Protein_GI_number: 16080677 # Func_class: G Carbohydrate transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: Capsular polysaccharide biosynthesis protein # Organism: Bacillus subtilis # 4 248 3 250 254 197 40.0 1e-50 MYTDLHCHILPGLDDGAPDLEAALTMAEHAAASGISRVVATPHHGGAYDNEAPAVREAVE LLQQALDRRGIALTVLPGHEIRVYDRLLDDLLDGRLCTLGGSRYLLLELPGGRVPGGFAE LLHELGVRGIVPILAHPERSGEIQRRPELLREWMDGGLLLQVTAGALTGEYGRRMQAFAL SLCRANAVHFLASDAHDVVVRKWHLADAYALAARKVGPEQVAAYRANAEYVARDEVIVPA VPAHKMSLSRALWPWPFNIRVKG >gi|333608009|gb|AFDH01000025.1| GENE 213 224929 - 225303 417 124 aa, chain + ## HITS:1 COG:lin0073 KEGG:ns NR:ns ## COG: lin0073 COG1396 # Protein_GI_number: 16799151 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 7 68 5 66 158 62 51.0 2e-10 MNKHGDRIAQLREKHALTQEELANKLGISRAALSHYETSRREPDFETMNKIATFFKVSAD YLLGRTTNPHAVLDEDVRDFVNSLELSDDKILEKFALSIDGRKLTAEEAKRFIAFVRAER SMSE >gi|333608009|gb|AFDH01000025.1| GENE 214 225263 - 225415 109 50 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTDEIVIDLHKLVDQLNLNPAILSSFQTRGPGDGTDPPTPTSNVPPSRKR >gi|333608009|gb|AFDH01000025.1| GENE 215 225672 - 226190 595 172 aa, chain - ## HITS:1 COG:BH4039 KEGG:ns NR:ns ## COG: BH4039 COG0582 # Protein_GI_number: 15616601 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Bacillus halodurans # 1 168 1 170 182 118 39.0 5e-27 MQVAQPIRDPEKITELQDVLKNHSMRDWLLFTIGINSGLHLNDILRLRVKDVKDRNEISI TEEKTGKSKSFWIDDALKSYIGEYVQYMDDEDYMFPSQKTGKPIKRIRVYRILNEAAKRV GLQDIGTHTLRKTFGYHYYQRTKNISVLRDLFNHSAPSVTFKYIGIDKRNSG >gi|333608009|gb|AFDH01000025.1| GENE 216 226390 - 227349 982 319 aa, chain - ## HITS:1 COG:sll1872 KEGG:ns NR:ns ## COG: sll1872 COG1316 # Protein_GI_number: 16330814 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Synechocystis # 35 319 79 352 463 123 29.0 5e-28 MKKKTKWKIAALSVLVIGVSASGWAYWSLDPSRHFENQDIPVLAQPQTAEGATPEPVQEP PKPDMKSFNILILGVDSRSGEPSRSDVMMAVHVVPTERKVNILSLPRDTRVPVKGVGLTK LNHAHIVGESKGGNQQGTLTATQTVSDFLGVPINYYAKTNFEGFKRIVDKVGGVDLTLEK DLHLKWQKTTIPKGQQHFDGDTALKVVRERYGAEGGEFGRQEEQSKVLRSIAIELLKPDK IPQLATLLPSLRKDILDTNFSDSDLISLAWLFKGVGQDNFRYTQLPGHSGRDEDPLVGSN LYYWIPDSEAVKKIKEDLF >gi|333608009|gb|AFDH01000025.1| GENE 217 227610 - 228431 1035 273 aa, chain - ## HITS:1 COG:BH3847 KEGG:ns NR:ns ## COG: BH3847 COG0395 # Protein_GI_number: 15616409 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Bacillus halodurans # 1 273 1 273 273 346 71.0 3e-95 MRLAQINRSLLYMLLAVMACLYLVPIYVLGVTSFKGLNEITLDQMWRLPSHPDFSGYKTA FDKLAPNFLNSLYLAVPATLLSALLGSLNGYVLSKWQFRGSNTLFALMLFGMFIPYQSIL IPLIQFLQTIHLYNSIPGLILVHVVYGLPICTLIFRNFYAGVPGEIMEAAKIDGTGFFGV YRYIIMPLSITGFVVVGIWQFTNIWNEFLFAVTLTSQKQQPVMVALQNLSGSQIVQWNVQ MAGAILAALPTLLVYIFLGKYFVRGLLAGSIKG >gi|333608009|gb|AFDH01000025.1| GENE 218 228431 - 229312 963 293 aa, chain - ## HITS:1 COG:BH3846 KEGG:ns NR:ns ## COG: BH3846 COG1175 # Protein_GI_number: 15616408 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Bacillus halodurans # 4 291 41 326 328 389 71.0 1e-108 MVLPSFAAILVFVYGFIAWTGYVSLSNWNTLVKDLSFAGLSNFKFLFGDFRFQSDLRNTL MFTVLFIAATMAIGIFLAMMVDAKIKAEALFRNIFIFPMALSFVVTGVVWQWILNPSTGV NLILKSFGVTDPPKWYTSTEIVPSIAWGLIDFGLPLALIAVVIAAVWQMSGFTMAMYLAG LRAIPDELREAARMDGAAERQVFTRIILPQLRPVTVSVVIILGHISLKIFDLIFAMTGPG AMFLTDVPGVYMFETTFRGNHYAQGAAIAIIMLLFVSLLIVPYLFSSLKKEEG >gi|333608009|gb|AFDH01000025.1| GENE 219 229468 - 230799 1626 443 aa, chain - ## HITS:1 COG:BH3845 KEGG:ns NR:ns ## COG: BH3845 COG1653 # Protein_GI_number: 15616407 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Bacillus halodurans # 5 434 8 433 436 568 65.0 1e-162 MKRKMVTVLSVMTIGTTLLAGCGSGESGGNGAQTTPGASSPAPSAAAAGAKKVEIFSWWT GAGEEAGLKGLIDLFKTKNKDIELVNAAVAGGAGTNAKAVLASRMQGGDPPGTFQVHGGA ELNTGWVAAGKMEALNNLYDKEGWKDKFPKDLIDLVSKDGSIYSVPVNIHRGNVLFYNKK IFDENGLKAPKTFDEFFQAADALKAKGITPLALGDKEPWTATMIFENVLLGTLGPDDYKK LWTGEISFEDAKVKQSLETFKKMLTYTNKDHAARNWQDAAQLVAKGEAAMNIMGDWAKGY FTTDLKLKANEDFGWAATPNTENSFMVITDTFGLPKGVKDPEAVKEFLKVLGSVEGQDVF NPLKGSIPARTDADTGKYDAYGKQTIEEFKKSKLTPSMAHGSAAPEGFVTQANQAMTIFV TKGDVEQTAKMLQQAAAASGMKK >gi|333608009|gb|AFDH01000025.1| GENE 220 230648 - 230932 94 94 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MAPAAAADGAGEDAPGVVCAPFPPLSPDPQPASSVVPIVMTESTVTILRFIGSIPFFLIF MSRIIVVSAYIDIVAWADGHRRGNHLHKFVRVLE >gi|333608009|gb|AFDH01000025.1| GENE 221 231261 - 231869 341 202 aa, chain - ## HITS:1 COG:MT3469 KEGG:ns NR:ns ## COG: MT3469 COG1357 # Protein_GI_number: 15842957 # Func_class: S Function unknown # Function: Uncharacterized low-complexity proteins # Organism: Mycobacterium tuberculosis CDC1551 # 26 197 6 177 183 98 36.0 7e-21 MYSYIEETYTGTDFSGRDLGEGELRNCTFERCRFIGTRLEEAWTESCQFIDCDFSGAQFN ASSHKRSAFTNCRFRGAKFFVAKFEECKMIGSDFNEASLDGITIAGGDWSYTNLRFANLS KQAMRGIRLVEADLYSCNLEKADLRDADLTRARMGKSRMQGADLRGALMDGVDFMSLDIK GARMDAHQGAAFLRAYGAKVDD >gi|333608009|gb|AFDH01000025.1| GENE 222 232072 - 233613 1085 513 aa, chain - ## HITS:1 COG:BH3842 KEGG:ns NR:ns ## COG: BH3842 COG4753 # Protein_GI_number: 15616404 # Func_class: T Signal transduction mechanisms # Function: Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain # Organism: Bacillus halodurans # 1 190 1 187 530 130 32.0 5e-30 MYRLLIADDEALEREGLEWMISRSMPGVFEVIHAANGRTAIQRAEQHRPDIVLMDIKMPG IEGLEALRRIKDIHPRMKLVLVTAYDYFSYAKQALEIGVRDYMLKPAKREQMIGLLTSLV QELKEEHVRREEELKTTEKLARLEPLAESELAMHLMRERTSETGESDLLELLALPPDPSG YALVLSFEEEEPHRVSGGPGLWGGGGENGDTASRKHMYDAVKSWCRSRYTCVVSPLMGRH LAVFVIRPGETEESGGAGRSSHSEPKSASAEEGARACGEAAAATAACGAAGSAAKACHGQ PVPPAASAEAAEPAAAASKLHGYVSGRLGRRATVGAGRAHHGLTGLRRSYAEACAAAINA DESAFVRVYDGEPAGDGPPIPAGNAAAGHGVPSELELAAQRLLSEREERTTSVLKEAKDW IDAHFVEEITLEQAAERVHLSLHYFSKMFKRHMGESFIDYVTRLRIDRAKELMKNDELSL KEVCFEVGYKDPNYFSRVFRKVTGISPTGYRGR >gi|333608009|gb|AFDH01000025.1| GENE 223 233588 - 235159 1312 523 aa, chain - ## HITS:1 COG:BH3841 KEGG:ns NR:ns ## COG: BH3841 COG2972 # Protein_GI_number: 15616403 # Func_class: T Signal transduction mechanisms # Function: Predicted signal transduction protein with a C-terminal ATPase domain # Organism: Bacillus halodurans # 1 502 2 474 481 318 36.0 2e-86 MSIRMKLFLFIPALVILMNSVTFFIYQSGRTVQESYHLTMDRILLYKEIAHKTEESLRSL SSYLIDLNGEGRGAFVALQNELRSLQGKLEADARSEEDSFARRNYANMLGTYLTAADSVL TAVESKDMQRYLQRYEEADKTAGYIKAEHQNLVDLELSFYQPLYKQMLLKTGEMNMLGQT LVAVNMLLSLVFAIWLSQSITKPIGRLVHAARQMSKGNLDAAPPPVQNEDEIGILTLAFG HMQVNLKELIAKNQANMEKDRLVKELEIKALQSQINPHFLFNTLNVLSKLALLEGAEKTS DLTVSVSNLLRYNLRKLDQPVSLREEVDHAREYFAIQQSRFRDRISFETDIDERALEQQI PCLTLQPLLENAFMHGIESMEEGAFIRLGIKKAGENIRVTVADNGAGMDEQTRLHLLRYG SESADGAGFAAREGNFSPGGGEGSPLAEAAAGYERSRTGRKPSTGLGTQNVFRRLQLFYG TDGLIEIESVPGKGTTVVLTLPEVTGQRAGTRGNACVPLADRG >gi|333608009|gb|AFDH01000025.1| GENE 224 235156 - 236166 1074 336 aa, chain - ## HITS:1 COG:BH3840 KEGG:ns NR:ns ## COG: BH3840 COG1879 # Protein_GI_number: 15616402 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Bacillus halodurans # 56 325 47 314 332 201 38.0 2e-51 MKKWAPSKWTVGLAVLFALFVLLLGRFAYTNAQINGIVRDIQDRGHTPVPGGKTKHVVMI SQELDNPFWRTIEKGARDAAEHYNIKLEYSGPYRNDIEEQTELFGKAIAGKPDGILIQGI RSEAYNKLIDKAVEQGIAVLTVDTDSPDSRRLSYVGTDNVESGRQLGELVAKAYEGRSAS IGMVIGSYEAGNQQQRLEGFRSVVDAEPNLKIVEVGVSNISRIQATQTAEHMLRSREGID VMVGTSALDALGILQASKSLNKQEQVRIFGFDDLTETREALARKEIEASVIQKPYTMGFQ SVEMLNRYFQGETLPDAAFTRIDILNPQNAGVAVAP >gi|333608009|gb|AFDH01000025.1| GENE 225 236438 - 237367 1048 309 aa, chain + ## HITS:1 COG:BS_yhcH KEGG:ns NR:ns ## COG: BS_yhcH COG1131 # Protein_GI_number: 16077973 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Bacillus subtilis # 4 307 2 299 305 355 58.0 6e-98 MNNQPVLEIRGVNKTIRGKKIIQDLSFEVYPGEVFGFLGPNGAGKTTLIRMIVGLMKMNK GDIVIHGQSIQNRFEDAIKHVGAIVENPEMYKFLSGQNNLVHYARMFPGGIPQSRIDEVV ELVGLKNRIKEKVKTYSLGMRQRLGVAQALLHRPSLLILDEPTNGLDPAGIRELRDYLRR LAREEGIAIVVSSHLLSEMELMCDRVAIIQQGKLVDVQDLRGEGAAPKETSYFFEVNDPA TAQAVVQEIDPHLHVTPHPNGIELTIGRERAADIGALLIQAGLRLYAMKPLTQSLEDKFL QITGSDQIA >gi|333608009|gb|AFDH01000025.1| GENE 226 237360 - 238289 1085 309 aa, chain + ## HITS:1 COG:BS_yhcI KEGG:ns NR:ns ## COG: BS_yhcI COG1277 # Protein_GI_number: 16077974 # Func_class: R General function prediction only # Function: ABC-type transport system involved in multi-copper enzyme maturation, permease component # Organism: Bacillus subtilis # 1 308 1 311 313 186 36.0 4e-47 MLNLIRNENMKIYRRLTTWIMVILLVGLVGLISFLIHYDSRGMNSADWRQAQTQRIEQLE KTKADFPDNAADLDQQIKLAQEHLNRDISPNQAAVWQAVGSMSSLIAVITVFTVVVSADA MSGEFSSGTIKLLLIRPVSRSKIVFAKYAAGFQFSIFMLLVLFASALVINLVLYGGAGTS PTVLELNSMGAIVEKNIITDMLSTYGFKCVELIMIVTLAFMISTLFRSNSLAIGISLCIM FLGNTVSMILSRYDWSKYLLFSNMDLTRYLHGQPLVPGMTMTFSILVLAAYFIVFNVLTW TVFRRRDVM >gi|333608009|gb|AFDH01000025.1| GENE 227 238444 - 239079 640 211 aa, chain - ## HITS:1 COG:alr7383 KEGG:ns NR:ns ## COG: alr7383 COG0515 # Protein_GI_number: 17233399 # Func_class: R General function prediction only; T Signal transduction mechanisms; K Transcription; L Replication, recombination and repair # Function: Serine/threonine protein kinase # Organism: Nostoc sp. PCC 7120 # 5 204 10 209 232 238 57.0 5e-63 MEAWIQKIERELLPGLDFESENPYDPVVVHKLPAPWQLVGAGNYAAVVSHPDMPGLVVKV YAPGRDGWEDEVEVYRKLGEHPAYSRCHYAKKPYLILKRMNGRTLYDCIRSGIRIPERVI LDIEEACEYARRLGLVPQDLHAKNVMMEDGRGKVLDVSDFLDDTPDTMWEDMKKAYYRLY LPLLSKHPIPMPDTLLNGVRKSYRWLRRNSS >gi|333608009|gb|AFDH01000025.1| GENE 228 239215 - 240513 1191 432 aa, chain - ## HITS:1 COG:TM1060 KEGG:ns NR:ns ## COG: TM1060 COG0477 # Protein_GI_number: 15643818 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Thermotoga maritima # 20 416 3 394 436 120 27.0 4e-27 MQAKTRSWNRFTPTRKHLWIATLEGAPATVVQTLLNGPFLTGYLLYLGATSAQIGLVLAM TTIVNAGQILMAFFMQRWKNRKLQILIFGGLHRILWAATGLIPLLLDRDLWIPAYIALYT SAFLSNAFGGVVWSTLMADMVPSSVRARYFGIRNMMLNALGALCLFAGGQILDKLGNEAG FEVLYLVIGTAAVLNVIAYLFYPNPPFEPSAESGLLPMLTRPMKDTSYIRATAFLSFWLF LQGIAVPLFSYVMLKLLQISYETISVLTVLQTAVMMISFYVWGNLNARWSNRRLLFWTLP LLSLSCLLWGMLAWLPALPVLIAVHILLGAGTGGFNQLAFNFIIGDTPRGERPMFIAMYN TLTGLAAFLGPLLGGMLYEKAEGLPLWVQQYGIAAGTGTVMLVLALTLGRRVLLERQSRR KKTETPDKSMPV >gi|333608009|gb|AFDH01000025.1| GENE 229 240700 - 241152 591 150 aa, chain - ## HITS:1 COG:BS_yngA KEGG:ns NR:ns ## COG: BS_yngA COG2246 # Protein_GI_number: 16078878 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Bacillus subtilis # 7 137 10 138 148 97 40.0 7e-21 MTNDNNGQKKRLNPEMLRLLRFGAVGVGNTAVDWAVFWLLFSGLHLHYGAAQTVSYLCGT LNSYLWNRKWTFASKEPVRVSEALKFLMVNGLCLGLSYLLLYVCSDVLGWNMLLSKLTVT VLLLLVNYAASKWWVFAPGEKRKEGESFEP >gi|333608009|gb|AFDH01000025.1| GENE 230 241156 - 241917 736 253 aa, chain - ## HITS:1 COG:lin1546 KEGG:ns NR:ns ## COG: lin1546 COG0596 # Protein_GI_number: 16800614 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Listeria innocua # 36 244 28 237 246 211 49.0 9e-55 MTGKRRSRGRKWLLALAIFILAAGIAAAFYLRPYGPDRTAVEAMRSGGGVTVTDSKDVTV YEGAEPKEPGVIFYPGGLVKPESYAPLARELAQRGHRTVVVKMPLNLAVLGGGRASEVIA ARPGESFVIGGHSLGGVMAARYAAEHPEGLRGVFFLASYADDKGSLRDKGLPVLSVTGSE DGVLNRDSFEKNKKNLPQDAKLLTLPGGNHGQFGSYGPQKGDHAASISPEEQTRRTAEAI TDWMTGIREKGKN >gi|333608009|gb|AFDH01000025.1| GENE 231 242077 - 242568 147 163 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRRNKWIGLSSGLVILAMAVAGAASLWRPSAELTPEKVVLNWNGRINEVPQADSRYQRLI DDAEKVIESTGKGPCKCTAELTGDVPDKPGLLLMLPPGQSVRIRKEFPVATAVHDVRRLY VPFQDGGDSPRMELDGGVYEVGRESLDALKKTAAEAAGNLTGG >gi|333608009|gb|AFDH01000025.1| GENE 232 243234 - 243905 950 223 aa, chain - ## HITS:1 COG:CAC2973 KEGG:ns NR:ns ## COG: CAC2973 COG0800 # Protein_GI_number: 15896226 # Func_class: G Carbohydrate transport and metabolism # Function: 2-keto-3-deoxy-6-phosphogluconate aldolase # Organism: Clostridium acetobutylicum # 1 220 1 213 213 221 55.0 8e-58 MKKIQLIQKITEQGVVAVLRGKTPDEVVEAAERAIEGGIKVIEVTMTVPFALQAIEKLAN TYSSTAQDASKFAIIGVGTVLDPETARAAILSGSEFVVGPSLNPATVALCNRYRVPVMPG TMTVKEIQEALELGVDIVKLFPGNLYEPSVIKAIKGPLPQANIMPTGGVSLDNLADWIKA GAVAVGIGSDLTTEASKTGDFSLIAKKAAQYTQAFKEAKAALS >gi|333608009|gb|AFDH01000025.1| GENE 233 244022 - 244996 1022 324 aa, chain - ## HITS:1 COG:BH3724 KEGG:ns NR:ns ## COG: BH3724 COG0524 # Protein_GI_number: 15616286 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Bacillus halodurans # 13 324 2 317 317 256 45.0 5e-68 MEQGNVQSPIYPDVVTFGESMALLMPDSGKGIEYSPQLTASFGGAESNVAIGLARLGHRV GWFGRLGKDPFGRMVLKKIRGEGVDVSRAVLSSEAPTGLMLREAVSGKASVYYYRKNSAM SLMKPGDLDEDYIAGAKILHVTGITPALSDSCKEAVIAAVRTAKRHGVKVCFDPNLRLKL WGIGEARETLLALAEEADYFLPGLDELQLLYETEDFDGIVEKLSKLRAVTVLKGGNDETF LIEGGRVSSVPFVKAERVVDTIGAGDGFCAGFLSGILQGKSHLEAVELGSLLGSLVVQAP GDWEGLPTREEVDAVLQGSRHIER >gi|333608009|gb|AFDH01000025.1| GENE 234 245495 - 246226 570 243 aa, chain - ## HITS:1 COG:STM1381 KEGG:ns NR:ns ## COG: STM1381 COG5426 # Protein_GI_number: 16764731 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Salmonella typhimurium LT2 # 1 243 1 244 245 341 63.0 7e-94 MKILFVGESWVVHMIHTKGYDSFTSTKYEEGATYLLSCLRQEGIDVTYMPAHEVQVRFPQ SLEELKTYDAIVLSDVGANTFLLQNPTFYQMQIIPNALELVKQYVAEGGGLLMVGGYLTF MGIEGKANYRNTILADVLPVVMMDKDDRVEMPSGFSPVVSQPHPLVNDLGEWPRLLGYNK LSAKPGAKELLSHEGDAILTLGTYGQGKTAAFASDCSPHWGSLEFMNWEHYSAFWSKLIK YLK >gi|333608009|gb|AFDH01000025.1| GENE 235 246295 - 247605 793 436 aa, chain - ## HITS:1 COG:BS_argE KEGG:ns NR:ns ## COG: BS_argE COG0624 # Protein_GI_number: 16079029 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Bacillus subtilis # 4 431 7 420 436 214 32.0 2e-55 MNQEQRVMEWIENHQGEIIHFLQQLIQIPSVNPWFFEEPAPSKEKDLQQFIAGKLGKLGA DIEIWEPVADELKQYEGMAGYYPGRDFTGRPNLAATFGKGTEGKSMLLFGHIDVVMAGSR WTVDPFEGQVIDGKMYGRGTVDMKGGVAAMIMAVEAILRSGFKLKGPVIVGTVVDEEAGG MGALDFIHHGYRADACILTEPTSLTIAPLCRGILWGKIKIQGRSGHIEMPQADWRDGGAV DAVKKARYILEHLDRLNEKWAVSKTHPYLSIPCQVHVAQLSAGEYPTSFANEAEIVFNAQ YLPSERDEKLVGGKVKKELTDFLREISESDPWLCEHKPEIEWLVDADCAETDVAHPFVQT CVQSLKAIGEEGKIEGLGFHTDMGWPVNVGIPTVNFGPGDPSLAHHSDEFTPVDEVIQAV KMIAKTIVDWCEIEEA >gi|333608009|gb|AFDH01000025.1| GENE 236 247695 - 248204 323 169 aa, chain - ## HITS:1 COG:no KEGG:CTN_0359 NR:ns ## KEGG: CTN_0359 # Name: not_defined # Def: ureidoglycolate hydrolase # Organism: T.neapolitana # Pathway: Purine metabolism [PATH:tna00230]; Metabolic pathways [PATH:tna01100]; Microbial metabolism in diverse environments [PATH:tna01120] # 1 144 14 154 177 81 30.0 2e-14 MEYKVQIEELTEEAFAPYGKVVDMPAIDPSKSGDGWDCWSYVQMLDVWEPIGFGLVVTKR REFAVTAMERHVSREELLLTFDREIVQPVALCMDIDDPDESPDPSTVKCFRIKPGQAIVI HRGVWHSPAYPAADDARYMFGIEKKKDKFGDEMINPWVDFINGSTVRFE >gi|333608009|gb|AFDH01000025.1| GENE 237 248232 - 249263 1034 343 aa, chain - ## HITS:1 COG:mll5706 KEGG:ns NR:ns ## COG: mll5706 COG1879 # Protein_GI_number: 13474749 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Mesorhizobium loti # 49 306 34 287 331 150 36.0 5e-36 MKKLALTLLTGVLALNLAACGSTSGNQTDNGGKPNQGAAGSKTYFMNPKSIGPAYWAAAE KGAKKAAADLKVEVLFNAPTEADSSKQINMIQDMLTRKVSGIGVSPNDAKAVGPVFKKAA GQGVNIVTWDSDAPGTDRQYYVAPATDQEVGELLAKTIGEEIGGKGQVAFMVAGLGSQNQ IAKSNAAKAYFTAKYPDIKVVTTVASDDDQQKAYANAQNLLQTYPDLKGIIGFAGGEPTA AAEVVEQAVKAGTLKKNQVAITGIAVPSVVKNYIKNGTIKTDIIWDPGKLAYVTVYIMDQ LAQGKEIKDGMEIPTIGTVKVNGQSVFIGTLEVTNDNVDSFDF >gi|333608009|gb|AFDH01000025.1| GENE 238 249269 - 250213 867 314 aa, chain - ## HITS:1 COG:BH3731 KEGG:ns NR:ns ## COG: BH3731 COG1172 # Protein_GI_number: 15616293 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components # Organism: Bacillus halodurans # 22 306 20 306 314 199 44.0 7e-51 MSAWTSRFPLRENKLIVQMLLLLVIIVLFSFLSPYFLTVNNFMNVLNQMVEVGLIAIPMT MIIISGAMDLSVGSILAFSAVCMGVAYERGIDIWISMIIGLLAGLLCGAVNGYLIARHRM QAIVVTIGMLVMLRGLVYVINQGRPISGFPDAFYFMGQQYIGVVPVNAIFLVVMFLLASF VMKKTRFSTYVYGIGNNEEVVRYSGISVVRIRFILFMLSGLFSALAGIFLVSRLASAEAT SGTNIELDVITATLIGGTHIFGGRGSLSGTFVGLLIIVFLRNGLNLLGVSVLYQAVILGA LLLLAVGNKKFNGE >gi|333608009|gb|AFDH01000025.1| GENE 239 250210 - 251172 523 320 aa, chain - ## HITS:1 COG:TM0955 KEGG:ns NR:ns ## COG: TM0955 COG1172 # Protein_GI_number: 15643715 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components # Organism: Thermotoga maritima # 13 308 22 327 331 166 36.0 4e-41 MKRLLNVHEAPIILFTILVTLLFSIISPDFLQFENIRLIVDQNISMFIVAIGMTMVILLG GMDLSVGSVLAVTATSVGLFLSHGIHPWLAAAMGICIGVLCGMVNGYFIAVRKIPDIIVT LATMYIFRGIAVGISGGTWMTNFPEGFRFFEQGYLLGISFPLLTAVILIAVFIYLMKFTR VGRRIYSIGGNGPAAKLAGISVARTKFKVYVLTGLLVGIASVIFAAKVGSVQASTAGSGL AFEVMAAVLIGGGSIFGGVGTIAGTMLGVLFMGIVKNGLIISKVSPFWVDAATGFLIILS IVINTLQRIRQNKGKEGDLV >gi|333608009|gb|AFDH01000025.1| GENE 240 251169 - 252680 191 503 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 239 496 11 256 329 78 26 3e-13 MRHPVLTMEGINKEFPGVKALSDVSFELYPGEVHALMGENGAGKSTLMKILSGVYSPTQG TIRLKGKEVTFGNPLDAQRQGVSIIHQEFNLFSNLTAAENIFIDRPEMVGRFGRIQWSKM YDEAQRLVDSIGGGEIDVRKEVRHLGVHSQQVIEIAKALSFKADVLIMDEPSAALPENEV KKMFDVVNRLRAQGVAIVYVSHRMKEIFEIADKVTVLRDGAKIDTRGIEEVTEQNLIQMM VGKEVGQLYPVREQKHGQEVVLKVEQLSLDSAHRVSFELRKGEILGLFGVPGSGTHTIAE RLFGLRRGTGDIIVHGTAVKISSPSQAKAKKIAYVPPDRHRQGIIKPMSIRQNLSLPMLP QLSKYTVLDEARIKEMSGEYMEKLRIKAPSDGQSVDFLSGGNQQKVVIGKWLAANPDILI LEEPTRGVDVGAKAEIYNIIHQLAQEGLSILLISSEMPEVIGLSDRILVLYKGTIVHEFA HGEADQEQLLQRASHPLPEGGLL >gi|333608009|gb|AFDH01000025.1| GENE 241 252835 - 253710 396 291 aa, chain - ## HITS:1 COG:VCA0131 KEGG:ns NR:ns ## COG: VCA0131 COG0524 # Protein_GI_number: 15600902 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Vibrio cholerae # 2 289 13 302 306 169 40.0 6e-42 MDIVTQVERHPIPGETIQGNETRFFIGGKGANQAVAASRSGVSVAMAGGLGLDSFGADIR RGLAEDKINLDYVADQPCMTGLALITVDEAGENNIILSSGANGRYGTEEIDQLDLSGFDV ILLQNEISSVANQRVLDKAAEKHIPVFMNPAPIDGFDRSQLRKVAFLILNEVEAEVLSGI RIEGSSQALEAGKKLLKDGIPHLIITLGSKGSIYMDQSGSQITFPAFSVDAVDTTAAGDT FIGAFAAKYVTGAELHDCLRYATAASALAVAQPGAQSSIPTDDQVQSFLTA >gi|333608009|gb|AFDH01000025.1| GENE 242 253759 - 254805 534 348 aa, chain - ## HITS:1 COG:BS_degA KEGG:ns NR:ns ## COG: BS_degA COG1609 # Protein_GI_number: 16078147 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 15 328 2 320 337 207 38.0 2e-53 MTLNLWKGVAKTNKEITIKDVAKQANVSVATVSRVMNGRDRVSEATRKKILKIVEEMNFV PNTMAASMVNKKTNMLSVVVPEIQNPFYTAVIGGMVEVAKKEGFFTLVVATNNDEAEEEE FFESFLGKNVDGIILIGTHKDADFYRNIRKPTILVDRYINDCGHDGVLIDNFRGAYEATK HFVDYGHERIAIIDGAHDFNDGKDRYWGYHQAMHESGLTPDPTYHKQGNWLEEDGYRFTM ELLQSEQPPTAIFAANNVICTGAIKAIRDLNLRIGEDISLIGFDENELAQFVQPRVTVVS RPTREMGIQAAEMLIQKIKGKPKEQTKLKKMILDVELKKFGSVKRLKA >gi|333608009|gb|AFDH01000025.1| GENE 243 255313 - 255564 116 83 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGVRVQIPPTAPSNPHADVAELADALDSGSSGVTAVEVRVLSSASRINERFLICFFWQNR NLFYYSLSLSWCSLPKKYHVSLK >gi|333608009|gb|AFDH01000025.1| GENE 244 256789 - 260238 2744 1149 aa, chain - ## HITS:1 COG:ebgA KEGG:ns NR:ns ## COG: ebgA COG3250 # Protein_GI_number: 16130971 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase/beta-glucuronidase # Organism: Escherichia coli K12 # 11 1147 16 1029 1042 754 37.0 0 MKELHLQRRDWENLDVLERDRLPARASFIPYGEEKEALTYAGERSDRTLLLNGTWAFQYT GSPEEAPVGFYEPEFDASAWDRLPVPSCWQLHGYGAPHYTDLYYPFPVDPPRVPADNPTG SFLREFTLPDDWTDKDIVIGFHGVDSAYNVWLNGEYVGYSEGSRLTAEFDLTPFIRSGRN VLAVQVYQWSAGSYLEDQDMWWLSGIFRDVVLTARPKLHLQNIRVHAGLDEACRHGLLRL AVTVAEAAGCAARIDGQTGEHNGTQTGAENGAQIGARNGSQTWTVSAADTARRPFTLAWK LQNREGNLIVSGEEIGLANNGKTDEIAGTEKERSFTIEAEIKEPRKWSAETPYLYDLIVT LLDEEGEVLETTALKTGFRRIEVKGGLMLVNGKAIRLRGVNRHDHHPDTGRTVTPETMEK DIRMMKQHNINAVRTAHYPNDPRFYDLCDRYGLYVMDETDLETHGFELIGDANRLSADPA WEHAYVDRMRRMVMRDENHPSIIMWSLGNESGFGCNHEAMYKWCRSYDSTRLVHYEGDRE GKACDVFSTMYSSPEKMRGFGEMKDLDKPHILCEYAHAMGNGPGGLEHYEELFRTYPRLQ GGFVWEWIDHGLRRKKADGREYFAYGGDYGDQPNNGNFCIDGLVTPDRTPSPGLMEYKKT IEPVSVEIAGGEPGKNEGAADLIIRNHYDFISLQNFRCTWKLEADGRLVGGGPAELPDLA AGEEGTLRIPLPVPAADERGPAEYWLTVRIVLASPAAWAEEGHEIAWAQFPLHACSEEAA GNEKATGAAIDSAAECSVGASEGQIAASQARGGEGSAADSAAAPAGVPGAALGHQEPAPA AEAAIRVEEADRLLTLTGADFTLVFDRGRGRIASWRHAGTPVIAEGGGPRLALWRAPIDN DMYVVADWRKACVHMAADDVRGSGWERLADGSVRVNISIRTAPPVYAWGFSCTWAYTVRA DGTVDLTVQGEPDGTPPEMLPRIGLRMELPGSTDRVTWYGLGPGESYPDSRQAARMGLYD AAVDDLRFPYVKPQESGNRSNVRWAYMRGVQGSGLLAAGQPSFDFGASRYTPEDLEAASH ECDLVPRDYVTLHLDYKQNGLGSNSCGPKQLPPHVLEPQAFRFAVRLKPLSGDAHPAQTA AALRSGGIS >gi|333608009|gb|AFDH01000025.1| GENE 245 260241 - 261740 1029 499 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_1683 NR:ns ## KEGG: Pjdr2_1683 # Name: not_defined # Def: major facilitator superfamily MFS_1 # Organism: Paenibacillus # Pathway: not_defined # 14 199 14 199 407 176 51.0 3e-42 MFSFRSSNTSMTIGVRRFLATEALYGIGIGLYSLALNLHLLALGASGGQIASISAVGILI MGIGALPAGMLAGKIGRKPMLLAGSMLVAAGAALFAAGRSLPVWYAAQAVASAGFMCIET TEIQLLFRYCRSRREESRAFHGMFAVFTAFTGLGNLLGGILSRADASAAGHAPSLYASAV CIAVLSLLRLRLLPAERAAGGSGGESSPAMGGPVAEAAAGAANGSCDAAEADSRGRDITD NGPGDSDRREPAAADASGRAARSAEEKHASGDCPTKPSVSGGRRQADSLPRLPQGFRRLL RNRSLWLLAANACLIGFVFSFIGPFMNVYLKFRAAWEDDLISYVYTVNGLVLFAASLAAP KIMERWGAKAAFTGAFLGNAGLAFLLLIAQPAPVFAALLVLRSGSFSLLGNLVDSETMSS LREEDRNLYAGMRAVFRCVGSSLSTMTAGFFMNAGDYHTPFLIAGVLLIVNFMYFRSRVL PLIIKRDDNLRGEPQAGGA >gi|333608009|gb|AFDH01000025.1| GENE 246 261864 - 262673 986 269 aa, chain - ## HITS:1 COG:SMb20969 KEGG:ns NR:ns ## COG: SMb20969 COG0395 # Protein_GI_number: 16264842 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Sinorhizobium meliloti # 1 269 1 269 270 326 64.0 3e-89 MKKVLTYALLLFFSLLFLMPFFWLVTTALKSPEEVYMYPPKWIPSELHWENFAKAWTIQP FNVFLKNSLTVTVLCNIGQLISSSLVAYGFARFRFKGRDALFMVVLATMMIPWDVTMIPL YMEFNFLGWINTLKPLIVPSWFGSAFYIFLLRQFIMTIPTELEEAAKIDGAGDLKIFTKI IIPLMFPALVLVSVFNMLDTWNDYLGPLIFLNDASMYTLTLGLAQFKGMFGVDMTSVMAV TTIICLPPLAVFFLAQRYIVEGISMTGIK >gi|333608009|gb|AFDH01000025.1| GENE 247 262695 - 263657 1040 320 aa, chain - ## HITS:1 COG:SMb20970 KEGG:ns NR:ns ## COG: SMb20970 COG1175 # Protein_GI_number: 16264843 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Sinorhizobium meliloti # 12 308 14 311 319 337 62.0 1e-92 MQPNTLQLQKGVRRSIWRRGRLTPFLFILPWMIGFVAFTLGPLLFSLVISFYDWPIVGER TFVGFQNYVNMFTNDPLFWHSLGVTVRFAAIFVPLNLAIALLLAVLLNQNVRGSGIFRTV FYLPSVISGVALAMIWAWVYSGEYGILNYFLSLVGITGPDWLREPNWSMIAMVAASLWAQ GSMMLIFLAGLKNIPGDLYEAAELDGAGAFKRFIRITLPMLGPTLLFNLITSIIAAFQQL TLALTLTGGGPLNSTYFYAMYVYENAFKYFKMGYSAANAWVMFVIVLALTMMVFRSTSMF VYYEGELKKNKARKTKRKAL >gi|333608009|gb|AFDH01000025.1| GENE 248 263684 - 264952 1572 422 aa, chain - ## HITS:1 COG:SMb20971 KEGG:ns NR:ns ## COG: SMb20971 COG1653 # Protein_GI_number: 16264844 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Sinorhizobium meliloti # 1 422 4 410 410 371 44.0 1e-102 MKKTLVLALTGSMVTALALSGCGSKQGEAQGGGNSGADGGKVTLRFATWDTGDLLKIQET IAKNFEAKHPNVKVQVEAYGDGFDQKLAASIGANNAPDVMYMWDFPTYYKNLEPLDERMK SDTTLKQDDFYPGLLNYVKIDGTAYGIPAGFTTRVMYYNKKLFDEAGVPQPKEGWTWDEF KAAAQKLTNPAKKQYGFGVRAENDPYDLQGIVWSNGGSFISDDGKTIEGYMNGKPAVEAI GMIGDLVKSKTAVIVGGKNQQSGDDIFKAGKIAMWESGIWPLDGFKEAKVDVGTVSMPVF PGKPVKGVIAESAVSMSKNSKHKEEAWEFIKYYASEEAIKLRTSDLPVRKSIVEGNKLDQ DPVYKAFYTMLEASDNTPAFLLSPKWNEVNRNLTSAINAIMLGQNAQDSMDTAVRDSQKF FK >gi|333608009|gb|AFDH01000025.1| GENE 249 265200 - 266444 1350 414 aa, chain - ## HITS:1 COG:BS_yesN KEGG:ns NR:ns ## COG: BS_yesN COG4753 # Protein_GI_number: 16077763 # Func_class: T Signal transduction mechanisms # Function: Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain # Organism: Bacillus subtilis # 7 408 3 362 368 129 29.0 1e-29 MSDTTIRVLIADDEVIIRRGLISTVPWERYGMEVVADAPNGTRAWEAFLEHEPEVVITDI VMPGMTGIELIRKIKEYAPRTKALLLSCHRDFEYAKQGIKYGASGYLLKTDFSDEELGDY LEGFRSELRRPGQQAPAQSGGAEASAADKSAGVEGALREWLHGIRDGFPAELERLLEGQW RWMREPTVPYLIGCGGPASAEAEAPGPSAAPGPATCAARLAAGLASAGLCAAAALSGQHV LLLVPQEERQAWNARLCARKAADPQLRWTEGTAFSGASGWLAEVRRLHGRIELETRHRVR IGEWPEPIAAAVRLIVEQADSQLSVAEAAHEVGLSRSHFSTLFKRVVGESFVAFTCRTKL GIASELLAASKLTVQDIADRVGMPDAKYFSKWFKRCTGQTPSHYRTEQRMTDAR >gi|333608009|gb|AFDH01000025.1| GENE 250 266441 - 268216 1718 591 aa, chain - ## HITS:1 COG:SP0662 KEGG:ns NR:ns ## COG: SP0662 COG2972 # Protein_GI_number: 15900563 # Func_class: T Signal transduction mechanisms # Function: Predicted signal transduction protein with a C-terminal ATPase domain # Organism: Streptococcus pneumoniae TIGR4 # 37 590 3 563 563 163 25.0 1e-39 MHTAFPCYNHFTEALTLLHAGEITLFRHLGLLPIRLRRSLQGKLVLLILLVAIIPLLSLG YVLYTKSSQTINEQFGRYGENTVFQLQVQIDSTLAQMKYTVGDILSYLLDPNFTVLHEEI PTTYLGFKEEQQLEQYLKAHKTLDTKGIFILTKSGYYYGERIANTDLVEESPWFGEERTG YRFSIYEPKQYSGTSNIPGEKVIGLLFQIHNQVGALEDARVLIEVKAEKLLDMFHEYERD TGAFLTISDQGRILYQTAKAYTKRDDDVVWTKQSEETDWKIEVRTPYHQFYQSSLLVRTF TFTAVSLSILLAFVLAYFSSLRFLRRIKKMKNSIRDVSLGRLDTRIVVDSEDEIGRLGRS FNHMVVQLQDLFGEVKRVERQKKEAELRALHHQINPHLLINTLASIQWKARIAGNAEVQQ MILHLTKVLDGNLNYTRELVTLKEELDVIHHYMNLQEYRFGHVFSYRIDTEEIPLDQVRI PRMTLQPLVENIFFHAFEDGAGTIEIKVREQGNAIRLSVCDDGKGMEPDTARQLLADPGD AVGRKKRSIGIYNVDQRIKLHFGDKYGLDVESEPGKGTCIGIRLPKEEETG >gi|333608009|gb|AFDH01000025.1| GENE 251 268315 - 269889 1451 524 aa, chain - ## HITS:1 COG:PAB1172 KEGG:ns NR:ns ## COG: PAB1172 COG1003 # Protein_GI_number: 14521976 # Func_class: E Amino acid transport and metabolism # Function: Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain # Organism: Pyrococcus abyssi # 14 518 2 496 502 402 43.0 1e-112 MIKRIERNSKVRKFHQAKWDEPVIFELHRPGERGILVPAAEPEVEAEVGDGLSALPASMR RETAPSLPEIGQAKVLRHYLRLSQETLGSDFNVEIGQGTCTMKYIPRINEMLIRSPKMMD LHPLQDADTVQGMLEVYHGLDLAMREISGLDRFSFQPSSGTQALFAMASIVRAYHDANGE GEKRDEIITTIFSHPSQAATAAVKGYKIITLYPDKDGFPDLEALKNAVSERTAGFVVANP EDTGIFNPRIREFTDVVHEAGGICFYDQANANGLLGIARAKEAGFDMCFFNLHKTFAAPH MCGGPATGALGVTAQLAPFLPGPVVEYDGSRYSLSGETPESIGKVRMFHGVAQTVLRSYA WIRALGPEGLLDVAQTAVLNNNYLYANILKIRGASAPYVEGGRLEQVRYSWEQLTKETGV TTEDVQRRMCDFGLHYWTSHHPYIVPQPFTLEPTESYSKEDLDEYLDALRHISREAYENP EIVKSAPHNSTVHRIDESSFDDPKEWCITWRAYLKKTEPAGAAR >gi|333608009|gb|AFDH01000025.1| GENE 252 270137 - 271534 1441 465 aa, chain - ## HITS:1 COG:APE2124 KEGG:ns NR:ns ## COG: APE2124 COG0403 # Protein_GI_number: 14601860 # Func_class: E Amino acid transport and metabolism # Function: Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain # Organism: Aeropyrum pernix # 9 463 9 470 471 295 39.0 1e-79 MATRQSSSHPYIPNTVSDVQKDMLQVIGAATIEELYRMVPESLRYRDTLQIGPALNEYEL QRHIETLLNRNLHARERLNFLGAGCWQHYVPAVCDEISQRSEFVTAYAGEPYEDHGRFQA LFEYQSLLAELVDMDVVNVPTFDWAQAASTALRMAARMNGRSEVLLPATTHPDRLLIIRN YLSPQIRCTLVGCDPATGLLDLGDLQSKLGPDTAAVYIENPSYLGHIEVQGEAIGKLAKE AGAVFAVGVDPISLGVLKPPSRYGADLVCGDLQPLGIRMNYGGGQAGFIASRDEEAYVME YPSRLFGIAPTSVEGEYGFGDVAYERTSFAKREKGKESVGTQTALWGITAGVYLALMGPQ GMLEVGKTIVQQAEYAKKRLSEIEGVSMKFNVSTFKEFVVDFNSTGKSVAEINKLLLEQG IFGGKDLSAEFAQWGQCALYCVTEIHTKQDIDTLAEALKKVLGRA >gi|333608009|gb|AFDH01000025.1| GENE 253 271886 - 272665 223 259 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 13 255 4 238 242 90 28 6e-17 MTTNTSPLDLTGKTALVTGAASGIGFAAAQTLAANGAKVMLLDMNEAGGREAERLLTEQG HFARYIPCDVTQSEDCQAAVEAAVRETGRIDIVFNNAGVIRRKTVVELTEEQWDLVIDVS LKGTFLLSKYAIPVMEKNGGGSIINTGSGWGLKGGDQAAAYCAAKAGVVNLTRGMAIDHG PAGIRVNCVCPGDTDTPLLRDEAKQLRRDEASFLVASAERPLNRLGTPQDIANAVLFLAS GMSAWVTGSVLVVDGGGLA >gi|333608009|gb|AFDH01000025.1| GENE 254 272791 - 274542 1154 583 aa, chain - ## HITS:1 COG:SMb20968 KEGG:ns NR:ns ## COG: SMb20968 COG3408 # Protein_GI_number: 16264841 # Func_class: G Carbohydrate transport and metabolism # Function: Glycogen debranching enzyme # Organism: Sinorhizobium meliloti # 1 573 1 568 570 376 40.0 1e-104 MNFDLSVVPFSRFGSYFALSRLPQSEKRSEGLYVRMIRGGDEQAGVLFGITPIDPKSREA LTDYRVEASPVKVRLESGTGWMEWCIPEPDCIRVRGEGIGLKLTAELSAYDYALPYQERG WELNSFSREVRILLSPLLGHFEPDVVWGGLRAKHIAFVMVPGGESQSFDLSLEEYRTVPG QRGAYSYEEAEAMAGQDWEQWLSRTIRTPGDWEEARTLAAYITWSCVVRADGYLSRPAMY MSKNWMTNIWSWDHCFNAMALAGTNPDLAWDQFAIFFDRQDESGMLPDFLNDKYALWNCC KPPIHGWTLDWMMKNSSAVTDDRLREIYEPLGKWTTWWFRYRDDDGDGIPQYNHGNDSGW DNSTAFLTDIPVESPDLSAFLVIQMEVLAVAAQRLGLDEESERWSARATELLQKLIGHFW DEKEGRFTAMRSGTHERSAGDSLLSFVPIVLGSRLPGPIREKVIADLKQPDRFLTGNGLA TESTSSPYYAADGYWRGPIWAPSTMLIVEGLRGAGDEEFASEVARKFCRMAAKSGMAENF DAVTGEGLRDRAFTWTSSVFLLLAGRCREEEMVAGASAGSPEQ >gi|333608009|gb|AFDH01000025.1| GENE 255 274873 - 275706 887 277 aa, chain - ## HITS:1 COG:TVN0207 KEGG:ns NR:ns ## COG: TVN0207 COG0395 # Protein_GI_number: 13541038 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Thermoplasma volcanium # 15 277 9 268 268 171 38.0 1e-42 MNTSQRKWMYRILPYTILVFIGICFILPLLWVLVASVDSNAMQSLKVPTRLTGTNYAEVI ANPENQRAYMIGLIMSLGQAMLVVILALLAAYPLSRYQLKYKKPFMLTVLFMTSLPITAV MVPVYQLFLTTKLYDNIFGVILFFAASSMPYGIWMLKNFMDSVPSELEEAAWIDGASVFT GIRKVVAPLMVPGICTVAVFTFSGSWGNFFVPYILLQSPENFPVSLKLYQFFGQYGMADY GKLAAFSVLYAVPSVILYMLSQRFMSKGFGLQGGTKG >gi|333608009|gb|AFDH01000025.1| GENE 256 275731 - 276558 800 275 aa, chain - ## HITS:1 COG:TVN0206 KEGG:ns NR:ns ## COG: TVN0206 COG1175 # Protein_GI_number: 13541037 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Thermoplasma volcanium # 1 274 20 294 296 158 38.0 1e-38 MLPSIAIMLVFFIYPILLTFYYSFTNLALTGEAAKELKFTGFDNYVRMFQDPTVRISIWN TLVFLIGSAVIGQQVLGFLVALLMKHKNKHFRRVIGTIVLAGWVTPEIVCALCLYSFFGD EGTLNAILVFFGIPVVTWLYTVPMITIILANIWHGTAFSMLVFQAALDDVPAEIEEAAVV DGASRWQILTRIILPLIKGTLTTNMMLVTLQTLGVFGLIYAMTGGGPGTSTTTLPIFMYN QAFVNYQLGYGTAISLLLLLLGIILSLFYIRAMRE >gi|333608009|gb|AFDH01000025.1| GENE 257 276798 - 278204 1082 468 aa, chain - ## HITS:1 COG:TVN0205 KEGG:ns NR:ns ## COG: TVN0205 COG1653 # Protein_GI_number: 13541036 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Thermoplasma volcanium # 5 465 11 476 519 155 28.0 2e-37 MADGRRKKWSVTAVLLSSALLFGCSGQSVKTTPGPTQTGKDAGNSPAAKKTITITYRDDG IGEQGALFKWIKEVASSYPDKSVEIKPTPIQASEGDYFAKIALALKSKDTAPDIVTEDTF ILNSDASAGYLEPLDDRLKGWEDWTNGSFIEAMKKGVTASDGKVYGVPYNTDSRGLWYNK EIFKKAGLPENWQPKNWDEVLNAARTIKEKAPDVVPIWMNMGKATGEATSMQTYEMLLYG TGDRLYDDASGKWIVKSQGILDALGFIETVTKEKLGPPLSKVLNGQAGNTATREYLPKGK LGISLDGSWITGNYLEGGAAPWPAYKDVLGFAPMPTSKGQAPGSITLAGGWALSIPSNAQ HKDEAWNFIKYALNKENTQKLVIASGNITVRADVAKDPGYTKMPFNELATEYLKNAEFRP AQDKYPEVSTQIQTMVESVATGTAPAAALNKYTQDVTRIAGAEHITEK Prediction of potential genes in microbial genomes Time: Sun Jul 17 08:05:59 2011 Seq name: gi|333607996|gb|AFDH01000026.1| Paenibacillus sp. HGF7 contig00081, whole genome shotgun sequence Length of sequence - 13858 bp Number of predicted genes - 12, with homology - 12 Number of transcription units - 5, operones - 2 average op.length - 4.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 8/0.000 - CDS 1 - 274 258 ## COG0422 Thiamine biosynthesis protein ThiC 2 1 Op 2 11/0.000 - CDS 432 - 1115 680 ## COG0352 Thiamine monophosphate synthase 3 1 Op 3 1/0.000 - CDS 1112 - 2029 974 ## COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase - Prom 2088 - 2147 2.4 4 1 Op 4 . - CDS 2258 - 3025 887 ## COG2022 Uncharacterized enzyme of thiazole biosynthesis 5 1 Op 5 . - CDS 3030 - 3233 323 ## BcerKBAB4_0647 sulfur carrier protein ThiS 6 1 Op 6 4/0.000 - CDS 3311 - 4471 1211 ## COG0665 Glycine/D-amino acid oxidases (deaminating) 7 1 Op 7 . - CDS 4468 - 5124 557 ## COG0352 Thiamine monophosphate synthase + Prom 5517 - 5576 4.6 8 2 Tu 1 . + CDS 5802 - 6371 543 ## COG1734 DnaK suppressor protein 9 3 Tu 1 . - CDS 6494 - 6976 511 ## GYMC10_0722 hypothetical protein - Prom 7028 - 7087 6.0 - Term 7323 - 7368 10.4 10 4 Op 1 . - CDS 7443 - 9089 1718 ## TTE2409 hypothetical protein 11 4 Op 2 . - CDS 9152 - 9844 442 ## COG3010 Putative N-acetylmannosamine-6-phosphate epimerase - Prom 9908 - 9967 4.4 - Term 10126 - 10159 4.5 12 5 Tu 1 . - CDS 10172 - 13858 4203 ## COG2770 FOG: HAMP domain Predicted protein(s) >gi|333607996|gb|AFDH01000026.1| GENE 1 1 - 274 258 91 aa, chain - ## HITS:1 COG:BS_thiA KEGG:ns NR:ns ## COG: BS_thiA COG0422 # Protein_GI_number: 16077944 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine biosynthesis protein ThiC # Organism: Bacillus subtilis # 3 91 2 93 590 108 59.0 2e-24 MTKSTEIQEPNVSTFPGSRKVYVEGSRPDVRVAMREIQLSPSSGRFGEEENAPVRVYDTS GLYTDTEEATDIRRGLPSNRYGWIVERGDVE >gi|333607996|gb|AFDH01000026.1| GENE 2 432 - 1115 680 227 aa, chain - ## HITS:1 COG:BS_thiC KEGG:ns NR:ns ## COG: BS_thiC COG0352 # Protein_GI_number: 16080880 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine monophosphate synthase # Organism: Bacillus subtilis # 14 220 9 211 222 195 51.0 7e-50 MTKTASETRYTGNLREALKVYLVMGSPNCGGRDPAAVLQAAIEGGVTLFQFREKGPGALQ GQERTELGSRLLGVCRQAGIPFIVNDDLRLAEELEADGVHVGQEDLAQWDREGLRHRFKG RILGISAHDPAEAREAVRCGADYLGAGPMYATATKPDARAVQGPGILAAMRADGISLPLA GIGGITPEGAGAVLAAGADGVAVISAISGADDPREAARRFSRLFTGG >gi|333607996|gb|AFDH01000026.1| GENE 3 1112 - 2029 974 305 aa, chain - ## HITS:1 COG:BS_yjbV KEGG:ns NR:ns ## COG: BS_yjbV COG0351 # Protein_GI_number: 16078236 # Func_class: H Coenzyme transport and metabolism # Function: Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase # Organism: Bacillus subtilis # 24 282 6 264 271 277 57.0 2e-74 MNMSLNKQQYPPEPRRQAPLVPAAATIAGSDSGGGAGIQADLKTFQELGVFGASALTAVT AQNTLGVHGVHPIPPSMVAAQIDAVAGDIGPAAWKTGMLFSAEIIEAVADRATFYKWSRL VVDPVMIAKGGASLLQEDAVQALRSLLLPLAQVVTPNIPEAEALTGMRIATMADRKEAAR RIHAWGVKYVVLKGGHGGNRAQSLDLLYDGRVFTEFAAPWVETRHTHGTGCTFAAALTAG LASGLPMDEAVLLAKRFIQAALENPLNLGAGHGPTNHWGYNRPGTAGAFFKTAPAAAGES EGWLR >gi|333607996|gb|AFDH01000026.1| GENE 4 2258 - 3025 887 255 aa, chain - ## HITS:1 COG:BS_yjbT KEGG:ns NR:ns ## COG: BS_yjbT COG2022 # Protein_GI_number: 16078234 # Func_class: H Coenzyme transport and metabolism # Function: Uncharacterized enzyme of thiazole biosynthesis # Organism: Bacillus subtilis # 1 254 3 256 256 380 79.0 1e-105 MLKIGPYEFNSRLLLGTGKFPDFTIQKKAVEVSEAQILTFAVRRMNIYDPEQPNFLSMLD VSKFKLLPNTAGAKTAEEAVRIAKLAKASGLCDMIKVEVIGCDKTLLPDPVETLKATEML LAEGFLVLPYTSDDVVLARRLQEMGVHAIMPGASPIGTGQGIINPLNLSFIIEEARVPVI VDAGIGAPSDAALAMEMGADGVLLNTAVSGAADPVRMAYAMKLALEAGRAGYEAGRIPRK RYATASSPLEGVSVG >gi|333607996|gb|AFDH01000026.1| GENE 5 3030 - 3233 323 67 aa, chain - ## HITS:1 COG:no KEGG:BcerKBAB4_0647 NR:ns ## KEGG: BcerKBAB4_0647 # Name: not_defined # Def: sulfur carrier protein ThiS # Organism: B.weihenstephanensis # Pathway: Sulfur relay system [PATH:bwe04122] # 1 67 1 67 67 67 53.0 2e-10 MKLHVNGDDITVPETVHTVEGLILHLGLKRNLLIVETNGHILQAEEHAHTPVADGDRIEI VHFVGGG >gi|333607996|gb|AFDH01000026.1| GENE 6 3311 - 4471 1211 386 aa, chain - ## HITS:1 COG:BS_yjbR KEGG:ns NR:ns ## COG: BS_yjbR COG0665 # Protein_GI_number: 16078232 # Func_class: E Amino acid transport and metabolism # Function: Glycine/D-amino acid oxidases (deaminating) # Organism: Bacillus subtilis # 21 378 21 364 369 208 36.0 1e-53 MNRDTDIVVIGGGVIGCSIAYQLAKRGVRVTLLEKERIAGQASGAAAGMLGAQSEMREAG PMFDFARRSRDLFPELAEELKELTGLDIGLTRRGMLKAAWTDAEAAALKADGRFQQEAGG RAEWLRPCETGWLEPGLSKELRGALHLPDEGHVLAPELSAALAAGAARLGARIMEHADVT GLLTESGRVSGVQTREGKIRCAGAVLASSLWSAQILAPLGVELPVYPVKGECFSLTLRQP LLARTIASGGCYIVPKPGGRIIVGATAQPGSFDRSPRLGSLLSLAAQAQRLVPGLADAEW ERAWAGLRPQTPDGMPYIGEITACKGLFAALGHYRNGILLSQATGVLAASVLTGGAAAAE AALPGASELLEAFRPDRKAVAAAVRQ >gi|333607996|gb|AFDH01000026.1| GENE 7 4468 - 5124 557 218 aa, chain - ## HITS:1 COG:BS_tenI KEGG:ns NR:ns ## COG: BS_tenI COG0352 # Protein_GI_number: 16078231 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine monophosphate synthase # Organism: Bacillus subtilis # 9 205 2 197 205 139 41.0 3e-33 MTPYPAGPELHAISTGRQKPEVLIRIASAIHPYVTAIHVREKKQSPRELWALLSGLAACG VPPGKIIVNDRADAARLSGAAGVQLPGSGLPASAVKKGFPGLRVGVSVHGPEEGGRAAKE GADYVIFGHVFATGSKPGAAPRGAEALRETVLACGGLPVIAIGGIIPENCAEVIRAGAAG VAVMSGIWEAENPAEAAERYRHELELALQPEKTGGELR >gi|333607996|gb|AFDH01000026.1| GENE 8 5802 - 6371 543 189 aa, chain + ## HITS:1 COG:BS_yteA KEGG:ns NR:ns ## COG: BS_yteA COG1734 # Protein_GI_number: 16080136 # Func_class: T Signal transduction mechanisms # Function: DnaK suppressor protein # Organism: Bacillus subtilis # 4 167 2 166 181 97 40.0 2e-20 MAALTEEERNKLEQRLYKEKSELEHVLESDREEDSLRDSTGELSSYDNHPADIATEAFER GRDQAVDENMEQQLTDVKHAIGRLESGSYGVCEVCKEPIPFERLEAIPWASTCVEHSQIR AEGDPAERPVEEEILEPILESPNDDDTGRAEIDDADAWKNVEEYGNSSDTRRTGNAQAKE PADACEDEK >gi|333607996|gb|AFDH01000026.1| GENE 9 6494 - 6976 511 160 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_0722 NR:ns ## KEGG: GYMC10_0722 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 7 115 6 115 276 77 38.0 2e-13 MSGFIGKIKQGAAEAGKKAQQTIEVNRLKLQIAAKQRDMQKLYTQIGEFVYEAGKQKQPY PETQVAAVTAELQAVEDEIKAMQNRIYSLYDEKSCECGHVVAVDTRFCPNCGRKFEPIHE QADFTAIMELKPFCPQCKEDIEPGMQFCTTCGYRLTEEEN >gi|333607996|gb|AFDH01000026.1| GENE 10 7443 - 9089 1718 548 aa, chain - ## HITS:1 COG:no KEGG:TTE2409 NR:ns ## KEGG: TTE2409 # Name: not_defined # Def: hypothetical protein # Organism: T.tengcongensis # Pathway: not_defined # 3 528 5 510 512 441 42.0 1e-122 MTKIVFVPLDERPCNLEYPQRLAEMTDLELAAPPMSILGRKKAPGDTEALGNWLLREAEG ADYALVSLDMLVYGGIVPSRLHYLTREDALKRLEVLRELKRNKPDLRIHAFNLIMRVPAY SSSEEEPDYYADYGRELFLYGWYTDKKQQEALTDEEERIFAGILDKIPQDVLEDFTGRRE INAFVNRTALELAEEGIIDYLIIPLDDNSQYGFSPLEQRALAILSEELDLTDRVAIYPGA DEIGCTLFARIFCESKGYLPKLFVRYSSTRGPFCIPKYEDRSLNESIKAHLTSAGAFMAD SSQGADAVLMVNSPAVGESDMAETSQAWSQRHRSYFSEVNLREFAQAMRVYLGEGRTVAL ADVAVCNGGDTVLLKLLARQGQLEGLSAYAGWNTSGNTLGTVIAHAVIEAYYAGAGETAG GTDADTPAGGRLRSEAQKRSSRAFYFYRLVEDWGYQALVRKDVTANVLPAFGAGYFGLAG KQPEIEAVIAEKLRAFVSERLAGLTSGQIRLANVHLPWNRMFEVGFDLDLVGDGSLDPSR ESKETARS >gi|333607996|gb|AFDH01000026.1| GENE 11 9152 - 9844 442 230 aa, chain - ## HITS:1 COG:lin2933 KEGG:ns NR:ns ## COG: lin2933 COG3010 # Protein_GI_number: 16801992 # Func_class: G Carbohydrate transport and metabolism # Function: Putative N-acetylmannosamine-6-phosphate epimerase # Organism: Listeria innocua # 4 227 3 229 231 209 46.0 3e-54 MEKHSLLEAVKGGIIVSCQALPDEPLFGSEMMVRMALAAEAGGAVGIRANTPVDIAAIKS RVKLPLVGLWKRDYEGSDVYITPTLEEVEAVWRAGADIIALDATMRPRPKGETLKEIVSE IKKRAGVLLMADISTVEEGLHAQEAGFDILSTTMSGYTPYSPQQEGPDFTLIREMAARAD IPVFAEGRIHTREDATECFRSGAHTVVIGGAITRPQQITKRFVDFVRIHV >gi|333607996|gb|AFDH01000026.1| GENE 12 10172 - 13858 4203 1228 aa, chain - ## HITS:1 COG:alr1121_1 KEGG:ns NR:ns ## COG: alr1121_1 COG2770 # Protein_GI_number: 17228616 # Func_class: T Signal transduction mechanisms # Function: FOG: HAMP domain # Organism: Nostoc sp. PCC 7120 # 2 314 697 1009 1009 460 80.0 1e-128 ATINTMVDQLSNFASEVTRVAREVGTEGKLGGQADVKGVSGTWKDLTDTVNYMTGNLTSQ VRNIAAVTTAVANGDLSKKITIDVKGELLELKETINTMVDQLSSFASEVTRVAREVGTDG KLGGQAHVNGVGGIWKDLTDNVNIMATNLTNQVRGIAKVVTAVANGNLKQKLMVDAAGEI YDLSETINNMIDTLDTFADQVTTVAREVGAEGKLGGQAHVPGAAGTWRDLTDNVNYMAST LTTQVRQITNVATAVTKGDLSRTIDVIAAGEVGTLKDNINEMIRNLKETTRINTEQDWLK TNLARFSRLLQGQRDLYEVCRMIMSELAPLVSMQHGVFYMNEANGEEQVLRMFSSYAYQQ RKHLSNEFRLGEGLVGQCLIEKQRILLTNVPEDYVMIGSGLGEAAPLNIVLLPIMFEDQV LAVMELASFRRFTEIDIAFLDQLTESIGIVLNTMQANMRTEELLSQSQSLAEELKKQQEE LQNTNEELEDKAKLLVIQKAEVESKNNEVEQAKRFLEEKAEQLALTSRYKSEFLANMSHE LRTPLNSLLLLAEQLSENPDHNLTDDQVKFARTIHDSGLDLLNLINDILDLSKIESGTIA PDFTEIKLTEITGNMERTFRHIAQDKKIDFKIKAEKALPESIISDSKRLQQILKNLLSNA FKFTEKGEVVLLMRRASSGWSQDNESLNRARMVLAFSVGDTGIGISEDKQQIIFEAFQQA DGSTNREYGGTGLGLAISREIAGMLGGEITLFSVVNVGSTFTLFLPVDLDPAMLEAAAAY VPEVIDVPAAQPKKYEYDRFDTTQLVDDRANIEAGDRVFLIVEDDMKFNEILLDMLHRKG LKAIITPKGNKAVALAKRYKPVAITLDLRLEDMNGSSVLDQLKEDIELRHIPVTVMTIED DATELLQKGVFDFLCKPIKNEDLENAIDKLNAFGNKPFQQLLVGMSDSERRRQTVDLVKN SDIKVSATDTARKALNQLKSKDFDCVLVDTDLPDMGPAQFVREMQKNAKNKYKPVLINRS EKLTKEEEDDLEELRSMAVIKEVKSPIQIVDETMLFLHRKLENLNESQRDILIKKHQSNE MIDSKKVLIVDDDIRNIFALTTILERQNMKVISAENGHDAIEILEQMPDINIVLMDIMMP VMDGYETMREIRRRPQFQDLPIIALTAKAMKGDREQCLEAGASDYITKPVNSAQLLAMLR DWFLAQDGLQPSPAELPGSEPFGWMKGQ Prediction of potential genes in microbial genomes Time: Sun Jul 17 08:06:18 2011 Seq name: gi|333607969|gb|AFDH01000027.1| Paenibacillus sp. HGF7 contig00033, whole genome shotgun sequence Length of sequence - 20461 bp Number of predicted genes - 23, with homology - 18 Number of transcription units - 17, operones - 5 average op.length - 2.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 8/0.000 - CDS 2 - 367 229 ## PROTEIN SUPPORTED gi|74313511|ref|YP_311930.1| putative deoxyribonucleotide triphosphate pyrophosphatase 2 1 Op 2 1/0.333 - CDS 360 - 1070 791 ## COG0689 RNase PH - Prom 1148 - 1207 3.5 3 2 Tu 1 . - CDS 1496 - 2551 1185 ## COG5401 Spore germination protein + Prom 2766 - 2825 4.2 4 3 Tu 1 . + CDS 2860 - 3387 649 ## COG1267 Phosphatidylglycerophosphatase A and related proteins + Term 3578 - 3613 3.1 - Term 3566 - 3601 5.2 5 4 Op 1 . - CDS 3691 - 4095 502 ## Dtox_0856 hypothetical protein 6 4 Op 2 . - CDS 4124 - 4336 266 ## COG1476 Predicted transcriptional regulators - Prom 4356 - 4415 5.8 - Term 4485 - 4513 0.5 7 5 Op 1 1/0.333 - CDS 4648 - 5634 1077 ## COG0491 Zn-dependent hydrolases, including glyoxylases 8 5 Op 2 . - CDS 5631 - 6386 711 ## COG0500 SAM-dependent methyltransferases 9 5 Op 3 1/0.333 - CDS 6442 - 7392 948 ## COG0598 Mg2+ and Co2+ transporters - Prom 7431 - 7490 3.6 10 6 Tu 1 . - CDS 7511 - 8446 282 ## PROTEIN SUPPORTED gi|145636669|ref|ZP_01792336.1| 50S ribosomal protein L4 - Prom 8473 - 8532 4.6 + Prom 8458 - 8517 4.0 11 7 Op 1 23/0.000 + CDS 8537 - 9013 482 ## COG1380 Putative effector of murein hydrolase LrgA 12 7 Op 2 . + CDS 9010 - 9693 945 ## COG1346 Putative effector of murein hydrolase + Term 9709 - 9748 8.2 - Term 9915 - 9966 15.3 13 8 Tu 1 . - CDS 10010 - 11947 2026 ## COG4412 Uncharacterized protein conserved in bacteria - Prom 12071 - 12130 8.2 - Term 12190 - 12219 0.3 14 9 Tu 1 . - CDS 12256 - 12981 942 ## Pjdr2_4964 hypothetical protein - Prom 13008 - 13067 6.5 + Prom 13129 - 13188 3.5 15 10 Tu 1 . + CDS 13215 - 13439 211 ## COG2771 DNA-binding HTH domain-containing proteins + Term 13464 - 13518 1.8 - Term 13455 - 13502 11.2 16 11 Tu 1 . - CDS 13719 - 13985 121 ## BL00883 phage related putative terminase small subunit - Prom 14103 - 14162 3.1 17 12 Tu 1 . + CDS 15160 - 15489 66 ## COG1396 Predicted transcriptional regulators 18 13 Op 1 . - CDS 15743 - 15931 231 ## 19 13 Op 2 . - CDS 15961 - 16227 130 ## - Term 16506 - 16544 -1.0 20 14 Tu 1 . - CDS 16564 - 16695 75 ## 21 15 Tu 1 . - CDS 18057 - 18860 218 ## + Prom 19005 - 19064 3.1 22 16 Tu 1 . + CDS 19262 - 19516 208 ## COG2771 DNA-binding HTH domain-containing proteins + Term 19541 - 19596 -0.3 - Term 19829 - 19870 4.0 23 17 Tu 1 . - CDS 19888 - 20460 164 ## Predicted protein(s) >gi|333607969|gb|AFDH01000027.1| GENE 1 2 - 367 229 122 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|74313511|ref|YP_311930.1| putative deoxyribonucleotide triphosphate pyrophosphatase [Shigella sonnei Ss046] # 10 113 4 106 197 92 50 2e-18 MPDLSASGVVVIATRNKGKVREFAHYFARFGKEVRSLDDFDDMPDIVEDGATFAANARIK ASAIAGRLNLPVLADDSGLCVDALGGDPGVYSARYAGEHAADAANNAKLLRELGAVSAAT GR >gi|333607969|gb|AFDH01000027.1| GENE 2 360 - 1070 791 236 aa, chain - ## HITS:1 COG:BH3068 KEGG:ns NR:ns ## COG: BH3068 COG0689 # Protein_GI_number: 15615630 # Func_class: J Translation, ribosomal structure and biogenesis # Function: RNase PH # Organism: Bacillus halodurans # 1 227 14 241 257 298 65.0 8e-81 MKITPHYIKHAEGSVLIEVGETKVICTATVEERVPPFMKGQGKGWVTAEYSMLPRATQVR NQREAARGKLGGRTMEIQRLIGRALRSVVNLEALGERSVTLDCDVIQADGGTRTTSITGA FVAMALAMEKLVASGKLSKLPITDYLASVSVGIVNGKPLLDLMYTEDSQAHVDMNVVMTG TGKFVEVQGTGEEAPFSREELNTLLALAEGGVYTMVEEQKKALGRVSGLIGAGVRA >gi|333607969|gb|AFDH01000027.1| GENE 3 1496 - 2551 1185 351 aa, chain - ## HITS:1 COG:BS_gerM KEGG:ns NR:ns ## COG: BS_gerM COG5401 # Protein_GI_number: 16079890 # Func_class: R General function prediction only # Function: Spore germination protein # Organism: Bacillus subtilis # 17 345 17 362 366 192 36.0 7e-49 MRKVRWLQAAAMTGAIAILGTGCGMWGSESKPIDAPPPGTETAMETGTGTGGTGADAGAK TSQTAKMTVYAKDPKGFVVPVSLDLPKTQSVAKTTLEYMVAKGPGESQLPAGFASLLPEG TTLTVDIKDKLATVNFNQAFKKYDAKEERKIMEGITWAMTGFSTVEQVKIKINGQELKEM PVARTPLDEPLSRKIGINLEKQEGVDYGQSTPVTLYFTNATAQNGKYYVPVTRLVKRTDD VAKAVMDELLKGPNTSKGLQPVLNASAKVLDVKKTSDTVLTVNFSDQLLDGNKKAPADGL QSVILSLTENTNAAKVQITVNGSPKVETSDSQTYSQPVSRPLHLNPNPEKL >gi|333607969|gb|AFDH01000027.1| GENE 4 2860 - 3387 649 175 aa, chain + ## HITS:1 COG:BS_yutG KEGG:ns NR:ns ## COG: BS_yutG COG1267 # Protein_GI_number: 16080281 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylglycerophosphatase A and related proteins # Organism: Bacillus subtilis # 9 163 9 163 166 200 65.0 1e-51 MKYSLDSEKVASATRELLEKRGVQTSQIAELTYFLQKDYFESLTLEQCLASVESVLAKRE VQNAVLTGIQLDMLAEEGKLISPLQEMIQHDEGLYGCDEILALSIVNVYGSIGFTNFGYI DKLKPGILKKLNDKSTYEKHTFLDDIVGAIAAAASSRIAHRKQSEAEKKGDAPGS >gi|333607969|gb|AFDH01000027.1| GENE 5 3691 - 4095 502 134 aa, chain - ## HITS:1 COG:no KEGG:Dtox_0856 NR:ns ## KEGG: Dtox_0856 # Name: not_defined # Def: hypothetical protein # Organism: D.acetoxidans # Pathway: not_defined # 18 134 12 127 127 80 41.0 3e-14 MTGRKTSKQRLIAAGFGLTSLVVIGFTLKKYASGEPVGTSELTSIAAALAAMFGALTWGN KEDGEGITQEEEMGRHITFVSAKAAYFIMLAASLIVCIVEKLAFGRDNMAVLILLGLGIV LLPAAEYIVARRYR >gi|333607969|gb|AFDH01000027.1| GENE 6 4124 - 4336 266 70 aa, chain - ## HITS:1 COG:L126409 KEGG:ns NR:ns ## COG: L126409 COG1476 # Protein_GI_number: 15672309 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Lactococcus lactis # 5 64 1 60 97 79 70.0 1e-15 MESAMENRIHELRKRIRLSQEDLAKACGVSRQTINAIENNKYDPSLQLAFHLARTLGVTV DDLFQADKDT >gi|333607969|gb|AFDH01000027.1| GENE 7 4648 - 5634 1077 328 aa, chain - ## HITS:1 COG:DR2076 KEGG:ns NR:ns ## COG: DR2076 COG0491 # Protein_GI_number: 15807070 # Func_class: R General function prediction only # Function: Zn-dependent hydrolases, including glyoxylases # Organism: Deinococcus radiodurans # 2 325 23 344 347 162 34.0 7e-40 MSHSTTVIALREGLWQIKVPLPFPLRWVNSYLLREPDGSLTVIDPGLRTEAAEALWNEAL EGLGFGYDRISQVVLTHHHPDHYGMAGWFQERTGAPVYLSETGIGQVRLLWGDGQPMTSL LTGLFARHGMDAALCGELAKHMDSFVPQVSPQPQLTALRAGDRVRLGGAVYEAIETPGHA AGHLCFYDAQTREIFCGDHVLPQISPNVSFMPGVEDDPLGAYMGSLREIAPLPVEMAYPG HRSPFAAFGQRAEELVRHHEERLALMADKLHEPMTAYALCRDTFGDRLTLHQLRFAMAET IAHTVRLALDGRAAESEREGIIVYQARF >gi|333607969|gb|AFDH01000027.1| GENE 8 5631 - 6386 711 251 aa, chain - ## HITS:1 COG:MA4352_1 KEGG:ns NR:ns ## COG: MA4352_1 COG0500 # Protein_GI_number: 20093140 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Methanosarcina acetivorans str.C2A # 3 226 34 267 376 91 30.0 1e-18 MKVKSAWYRESFGKDYLLVYKHRNFEGAYAEVKRMMNWLHLPEGARVLDLCCGMGRHSLA LADFGYTVTGIDLSDTLLGEARKQDPEERVTWLHGDMRRVPSEESFHAVVNLFTSFGYFE QEEENRLVLSEIERLLRPDGKFIIDYLNPAYVKTNLVPHSSREENGLFIEETRSIENGYV RKQICITDEQDGPRHYSEQVRLYSCEAFVDMLYAAGLRVDRIYGSYDGKDYDRESSPRMI FVGGREGESLQ >gi|333607969|gb|AFDH01000027.1| GENE 9 6442 - 7392 948 316 aa, chain - ## HITS:1 COG:BS_yfjQ KEGG:ns NR:ns ## COG: BS_yfjQ COG0598 # Protein_GI_number: 16077867 # Func_class: P Inorganic ion transport and metabolism # Function: Mg2+ and Co2+ transporters # Organism: Bacillus subtilis # 1 316 1 316 319 342 50.0 6e-94 MIRTVAVTRSGELVLDLPLQELDRDSIDWYWVDFNNPTHEEALLLDTHFHFHPLAVEDCF HLLQRPKLDHYEDVHFFVLHAIHPQTLEADEVDLFVAPRFLVSFHFTELKEINDAWQKLQ AEPDNWKRGSSFGAYLVMDKLVDEYFPCIHMLEDEMNDFDSDQKGTSIHALMRGVFDIRS KLAHLRRSIIPMRDLLYRVVNSDKLPNVREQQIYYADIYDHLLKLAEMIDSIRDTTADMR ENFISLNSYRMNTIMKTLTVITTIFMPLTFLAGIYGMNFDNMPELHWPYGYFIVLLIMFG IGFAMYVWFKRKGWFD >gi|333607969|gb|AFDH01000027.1| GENE 10 7511 - 8446 282 311 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|145636669|ref|ZP_01792336.1| 50S ribosomal protein L4 [Haemophilus influenzae PittHH] # 15 276 2 278 301 113 27 1e-24 MEGEPMQKAKGGDDLDVRHLQYFLETAKRRSFTKAAEALHVTQPTISKMIRILEEELGVE LFDRTARQIVLTDAGEAVMIQAQQIVRSLENLSVDLEDVTSMRKGQIRIGLPPMTGAPFF PELIAAFHKLYPGIGIRLIEEGARTVEREVESGSLDLGVAVLPVDAERFEMFAFVKEELR LVVHHGHRLAHRQTVRLAELSGEKFLMFREGFTLHESIPEACIQAGFKPDIIYESSQWDF LSGMAEAGLGVALLPETICRKLSPDKVATITLVSPRIPWHLVMIWRKEGYLSYAAREWLR FSKEWLSRPNR >gi|333607969|gb|AFDH01000027.1| GENE 11 8537 - 9013 482 158 aa, chain + ## HITS:1 COG:BS_ywbH KEGG:ns NR:ns ## COG: BS_ywbH COG1380 # Protein_GI_number: 16080883 # Func_class: R General function prediction only # Function: Putative effector of murein hydrolase LrgA # Organism: Bacillus subtilis # 30 158 1 126 128 112 48.0 3e-25 MNKQPAPPLSGPHKKLRFVWPPDRFAPVHVRRALVTCGQIGLLIAFAYLGRLVSERLHLP VPGSIVGILIVFAALHFGWVRLEWIEKGADFLLSMLLLFFVPPAVGILEYKEMFSVSGSG YLLIIIISTFFVMASTGLVAEFLGRRRAGKDKKEEAAS >gi|333607969|gb|AFDH01000027.1| GENE 12 9010 - 9693 945 227 aa, chain + ## HITS:1 COG:BS_ywbG KEGG:ns NR:ns ## COG: BS_ywbG COG1346 # Protein_GI_number: 16080884 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative effector of murein hydrolase # Organism: Bacillus subtilis # 5 216 4 215 241 188 50.0 6e-48 MTGTGLLYLLITIVVFWAANRLYRKTGKAYLSPLVVAPVLLIAGLFFTDTPVEAYNAGTK PLTDLLQPATVAFAIPLYRQFKLLRKHAMVLVAGVLCGSVVAVLTSVLPAGWIHASPQMI ESVAPRSITTPIAMEVSRSLGGIPSITAVFVVVTGICGSVIGPLVIRSLRIRSGISRGLL LGMGAHGAGTSKAHELGSEEGAIASVAMILAALFSLGLIQPIMAPFL >gi|333607969|gb|AFDH01000027.1| GENE 13 10010 - 11947 2026 645 aa, chain - ## HITS:1 COG:BS_bpr_2 KEGG:ns NR:ns ## COG: BS_bpr_2 COG4412 # Protein_GI_number: 16078594 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 434 639 668 889 898 60 27.0 9e-09 MIVCLLQISPLVHAEAILQNQAVNGGTINQNIVFIDVNNHWANDAIYDMAKKGIISGYED SSFKPEKSITREEFAKLIALTFSINLQTPAEPTFADLNPDKWSFGYVESTKEFLTGYYPP KGKPFFSPDTKATREDVAVALVKTMGYTTDDLRSSSTLGRNFSDVDEISYNLRDYVAIAT EKQLIGGYEDSTFRPQKPITRAEVATLLFRVIKSSAQDQADGPSLEVTVPEKTESGTFYV SGKTHRDAKVQINDKAVSTDEGSFKEGYRLEKEGAYEIRVTTKLPSGKTTTVTKKVTYQV NGPDLKVDNTPDTVTKGSLTISGKVKKDTNYSYPTVYLNDEKMYVSSWDGTFSKDVKLAE GENTFTVKAENEAGKETVVTKKVTFSSGGPELKVNSIPDSSQVASIKVSGTVKDANDSYP ILYINDKKVYMYGGSFSESIRLEEGENTLTFKAENQNGKVTVVTKKVTFNVNGPTLKLNA TPEKTASKTLTVSGYVTDKNDSMPTLKINGKKVYYTSYASGSFSEEITLSEGENTLVFEA TNSTGRSTTLTRTVTLETDAPVIQVSYHPGSTTLSYMTISGTVKDKNDSYPVVYLNDRKI YCSSYDGTFSEWLDLKKGANPYTIVVSNKYGKTATVTGNVYRVDR >gi|333607969|gb|AFDH01000027.1| GENE 14 12256 - 12981 942 241 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_4964 NR:ns ## KEGG: Pjdr2_4964 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 3 112 6 109 493 76 39.0 8e-13 MRKSWAAAGMTAALLVGITAGAYATSNLKEIKAFLNPDLQVDLNGVTFTLKDEQGNDLVP ITYEGNTYLPLRDLAQRLDLSVTWDGTNNKVFLKNKPYMEFSAEDEALLEKYGYGVRVPR WLENVMVSVIPEENVKTSIEEGRLDKRAQALTLIHYMVQDEDLHRLHDVVARIEVYKKED WPEVKKTAAGVEVLGENDRYVYIAKKAAENPYEPGTLDAEGFGDLRDWLDLHDYYFTLSG K >gi|333607969|gb|AFDH01000027.1| GENE 15 13215 - 13439 211 74 aa, chain + ## HITS:1 COG:BH3075 KEGG:ns NR:ns ## COG: BH3075 COG2771 # Protein_GI_number: 15615637 # Func_class: K Transcription # Function: DNA-binding HTH domain-containing proteins # Organism: Bacillus halodurans # 1 74 1 74 74 98 81.0 3e-21 MKGSDHKNKFLLTNREREVFELLVQDKTTKDIAQQLFISEKTVRNHISNVMQKLNVKGRS QAVVELIKLGELKI >gi|333607969|gb|AFDH01000027.1| GENE 16 13719 - 13985 121 88 aa, chain - ## HITS:1 COG:no KEGG:BL00883 NR:ns ## KEGG: BL00883 # Name: not_defined # Def: phage related putative terminase small subunit # Organism: B.licheniformis # Pathway: not_defined # 1 83 1 83 107 112 75.0 5e-24 MAVPTAKRIREYLGDSYKESDEELIKLYLETHQFYRRLQAEVKNSKLMYEYTNKAGATNL VKNPLSIEQAKTVQTLNNLLKSLIQRKS >gi|333607969|gb|AFDH01000027.1| GENE 17 15160 - 15489 66 109 aa, chain + ## HITS:1 COG:ECs5252 KEGG:ns NR:ns ## COG: ECs5252 COG1396 # Protein_GI_number: 15834506 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Escherichia coli O157:H7 # 1 84 3 86 154 62 40.0 3e-10 MDILKLTGARIRELRKLQGLSQEALAERAGLHMVYLGGMERGERNITLENLAKIAQALNV EVMELLNFNSSGTEDDDIIVAVTAALRDRSTEDKRRILQIINLIPKSGE >gi|333607969|gb|AFDH01000027.1| GENE 18 15743 - 15931 231 62 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKDIISSMLIAIFITIAASFVERPVSFYFFVIIMVIIYVVGWIVEKISKYISKDKKSKQF KG >gi|333607969|gb|AFDH01000027.1| GENE 19 15961 - 16227 130 88 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MEGALRGVSLYVTSRIGNNWLTGLTQVFLGDVTSSLKDKQYEYATVLTRKVYTSPDNRYA YYMTMVYYRDSSFSTPYRVKTEFMGWAN >gi|333607969|gb|AFDH01000027.1| GENE 20 16564 - 16695 75 43 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFKVTQHTTPQSYGMFTPFSSLKKTVASPSQNCFVLTYMVKFI >gi|333607969|gb|AFDH01000027.1| GENE 21 18057 - 18860 218 267 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MEWLDVAWTWIVTDGWQFIVSILAGTGAAKLFVDYSFKKRLEQDKQVLNKELESHKKELN IELESHKQALSVMTENSKFDYQRMMLDFSLYRNKKHEIYPELFKKLYVAVRELSHLSVSW DQENLDMYSIVKIEKYLFEEEEIRHVSEDCDEKDVGKIKIKMMVEELKEAQQKFQDALDY FTSSQLFIPAEISKDIINLLSLGNDLATMRTHQIFVKTTNNKIEHTSSEAKIQFRLNEIS KIMWRIERSFKKELSLAEYDENFLKKA >gi|333607969|gb|AFDH01000027.1| GENE 22 19262 - 19516 208 84 aa, chain + ## HITS:1 COG:BH3075 KEGG:ns NR:ns ## COG: BH3075 COG2771 # Protein_GI_number: 15615637 # Func_class: K Transcription # Function: DNA-binding HTH domain-containing proteins # Organism: Bacillus halodurans # 11 84 1 74 74 97 79.0 6e-21 MKVSEQQYLPLKGSDHKNKFLLTNREREVFELLVQDKTTKDIAQQLFISEKTVRNHISNV MQKLNVKGRSQAVVELIKLGELKI >gi|333607969|gb|AFDH01000027.1| GENE 23 19888 - 20460 164 190 aa, chain - ## HITS:0 COG:no KEGG:no NR:no TFTFDTEWMANNLGTARLKLDLYLQQSPMSSAIKEQLTQSVDKAMSTKMGIAEYDDYKFS LISTPSFRKQFASHQEMSLEIKRKYSAHLQDLNAKKSVGTIMWESMKGLLNQKPEDLLSG LMNAFNSLHHSLISAPSMQGDVGPKAKLEFANQVRDANLEDWNSFISSLNIGQQQKSALT IPKNSIDIKV Prediction of potential genes in microbial genomes Time: Sun Jul 17 08:07:05 2011 Seq name: gi|333607967|gb|AFDH01000028.1| Paenibacillus sp. HGF7 contig00239, whole genome shotgun sequence Length of sequence - 593 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 592 65 ## COG0477 Permeases of the major facilitator superfamily Predicted protein(s) >gi|333607967|gb|AFDH01000028.1| GENE 1 1 - 592 65 197 aa, chain + ## HITS:1 COG:CAC0762 KEGG:ns NR:ns ## COG: CAC0762 COG0477 # Protein_GI_number: 15894049 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Clostridium acetobutylicum # 1 197 110 306 411 315 84.0 4e-86 ALWVLFAGRIIEGITGGSIGTIFAYFADIIPAEQRTKYFGWVSAVVGVGTVIGPTLGGLL AKFGYSAPMYFGAVITLVNVIYGFFFMPESLKKNNRLKEITFVRLNPFTQLANLLSMKNL RRLLVSAFLLWVPNGSLQAVLSQFTMDTFSWKPALIGLMFSIMGVQDIISQGFIMPKLLK KLNDKQIAILGMVSEII Prediction of potential genes in microbial genomes Time: Sun Jul 17 08:07:10 2011 Seq name: gi|333607950|gb|AFDH01000029.1| Paenibacillus sp. HGF7 contig00158, whole genome shotgun sequence Length of sequence - 15086 bp Number of predicted genes - 15, with homology - 14 Number of transcription units - 10, operones - 5 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 7/0.000 + CDS 181 - 1263 1114 ## COG0701 Predicted permeases 2 1 Op 2 . + CDS 1291 - 2229 819 ## COG3689 Predicted membrane protein + Term 2251 - 2283 4.7 - Term 2233 - 2278 2.2 3 2 Tu 1 . - CDS 2406 - 3476 922 ## COG0523 Putative GTPases (G3E family) - Prom 3567 - 3626 5.6 - Term 3695 - 3737 4.2 4 3 Tu 1 . - CDS 3760 - 3897 179 ## - Prom 3996 - 4055 3.0 - Term 4024 - 4070 8.6 5 4 Tu 1 . - CDS 4083 - 5144 588 ## COG3397 Uncharacterized protein conserved in bacteria - Prom 5179 - 5238 3.3 + Prom 5480 - 5539 5.7 6 5 Tu 1 . + CDS 5620 - 6897 966 ## COG0477 Permeases of the major facilitator superfamily + Term 6978 - 7035 8.7 + Prom 6968 - 7027 3.2 7 6 Op 1 . + CDS 7070 - 7927 759 ## COG0190 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase 8 6 Op 2 . + CDS 7924 - 8544 607 ## COG3404 Methenyl tetrahydrofolate cyclohydrolase + Term 8618 - 8668 10.2 - Term 8606 - 8655 2.4 9 7 Tu 1 . - CDS 8687 - 9181 542 ## BBR47_11200 hypothetical protein - Prom 9323 - 9382 5.8 + Prom 9163 - 9222 6.1 10 8 Op 1 . + CDS 9306 - 9929 386 ## COG5516 Conserved protein containing a Zn-ribbon-like motif, possibly RNA-binding 11 8 Op 2 . + CDS 10051 - 11283 1238 ## COG2309 Leucyl aminopeptidase (aminopeptidase T) + Term 11350 - 11384 5.0 + Prom 11449 - 11508 6.5 12 9 Op 1 . + CDS 11528 - 12178 479 ## COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism 13 9 Op 2 . + CDS 12166 - 12522 266 ## GYMC10_3750 hypothetical protein + Term 12600 - 12653 0.1 + Prom 12553 - 12612 7.6 14 10 Op 1 18/0.000 + CDS 12714 - 13943 1089 ## COG0477 Permeases of the major facilitator superfamily + Term 13980 - 14018 9.3 + Prom 14044 - 14103 4.7 15 10 Op 2 . + CDS 14131 - 14604 312 ## COG1846 Transcriptional regulators Predicted protein(s) >gi|333607950|gb|AFDH01000029.1| GENE 1 181 - 1263 1114 360 aa, chain + ## HITS:1 COG:BH1518 KEGG:ns NR:ns ## COG: BH1518 COG0701 # Protein_GI_number: 15614081 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Bacillus halodurans # 53 355 31 334 337 242 45.0 1e-63 MKNVIITIKIKVLSYTGGENVHFSGASRGMRKRHLIYIAAGSFLAILAWQAVRTGNAVLP DPSVIRLFKTMFIGIVLEAVPFIMLGVLLSSFMQVYIPETWIRKAIPRNPLLGFVFACLL GILFPICECGMIPVVRRLINKGMPLYIGVVVILTGPIVNPVVYAATYTAFRMNPEMVYAR MGLALGVSAFIGLFVYAFINKNPLKHRLDSLYAGNGQDCAHVQGGGKFVTMMGHAGGEFF DMGKYLIFGSLLTAVIQAFVPRGDLSALGEGEVLPHLFMMGFAYMLSLCSTSDAFVASSF LQTFSKGSLLTFLVFGPMLDFKSTLMLLSVFKTKFVLLLAVLITVTVFAGSVVVEHLYFK >gi|333607950|gb|AFDH01000029.1| GENE 2 1291 - 2229 819 312 aa, chain + ## HITS:1 COG:BH1517 KEGG:ns NR:ns ## COG: BH1517 COG3689 # Protein_GI_number: 15614080 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Bacillus halodurans # 8 302 11 317 321 175 29.0 1e-43 MEDRRAYAFHYFIRAAILCGFSFYIVYLVKTGSMPHYLAPRLVPYVKASAIALFVLAVIQ IYLALQPAAGKEPDCGCESDVRKSKLSHSAAYSLFLLPLLLGFLLPDRVTGSDIVQVKGI QLNTSSLQTQRNASPQDDPPKKELSSGGTSQGGEDTEEARLKEMFKGSRFTEDYAKLAMR LYKNKTILIGDKGFMEKLTAVDLFAGNFAGKQMEISGFVYREDGMPKNQFVVARLTMQCC SADASPYGVIVEAPGADSYLKDTWVTVKGTIRKSVYEDKDVMKLEGAVIQKIKEPSSPYV YPYAGDFADLGK >gi|333607950|gb|AFDH01000029.1| GENE 3 2406 - 3476 922 356 aa, chain - ## HITS:1 COG:BH1519 KEGG:ns NR:ns ## COG: BH1519 COG0523 # Protein_GI_number: 15614082 # Func_class: R General function prediction only # Function: Putative GTPases (G3E family) # Organism: Bacillus halodurans # 3 336 2 312 320 166 34.0 5e-41 MTIPVFVLSGFLGSGKTTLLLRMLEESKKLGLRPGILMNELGKADVDGLILEGHSSASIE KLLDGCVCCSKKSELTGSLQALLVRNPDMLFIELTGVANPEEIADVLTEPGLLDRVALKQ VITVLDAENFMDYNSLFASDKQLVRTLRRQVEVADLILVNKTDYVHRIRLHQIEKAIRKL NGHAMLVYTTHCRIELKPILEGVQPAQKGPLTVRPIRMTKIRTHPKEPSTAGSGRGMHPA DSPAPAETAPSHSRVRTVTLPWNPAAGLTKADVDAFLQRWKDGLIRAKGYVTFTESGHMH LLQYAGKRSYWEPSFYRGEPYLVFIGIDLDADRLSEEWKRLLDAPQSLEPESGRRK >gi|333607950|gb|AFDH01000029.1| GENE 4 3760 - 3897 179 45 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGKKMMFTAIGLGAAYLLRNKDARQKLKDQFQTFAGSAKTQQSLQ >gi|333607950|gb|AFDH01000029.1| GENE 5 4083 - 5144 588 353 aa, chain - ## HITS:1 COG:lin2611_1 KEGG:ns NR:ns ## COG: lin2611_1 COG3397 # Protein_GI_number: 16801673 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 24 302 11 288 294 234 47.0 2e-61 MSQSISWNRSLFKVSPFLVAFAALVIGAICSLVFAESASAHGYITGPASRAALCNQGINK NCGAIVYEPQSLEAPGSYPAGGPADGQIAGAGAAFPELNAQTADRWSKVNINSGSNTFTW KLTAAHATREWKYYITKTGWNPNAALKRSDFELFCSFNDGGKKPNPSTSHTCDVPARSGY NVILAVWEIADTPNAFYNVIDVNVNGGGTGTPTDNQAPTVPAGVTASGVTANSVTLNWSA SSDNVGVTGYDVYQGSTLVGTSTTTSFTVTGLTADTSYTFTVKAKDAAGNTSAASSAVTA KTTAGGGGTTAPAWSASSVYTAGNRVTYNGVVYEAKWWTQGETPGKADVWKTV >gi|333607950|gb|AFDH01000029.1| GENE 6 5620 - 6897 966 425 aa, chain + ## HITS:1 COG:SA0628 KEGG:ns NR:ns ## COG: SA0628 COG0477 # Protein_GI_number: 15926350 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Staphylococcus aureus N315 # 10 325 5 332 404 65 20.0 2e-10 MSVAADIKLFISVKKAWILVLAMILYGIGVGILAPMNAIYLKEGIGLGKGEIASIFAVSL VLNMIFTISVGILSDKIPRKKIIPMAASVVCAAGLLIYMRADGYVSALVGMSIASAPSGM VMGQMFAMARNHFSKLAPDIVEISQLWLRASFSVGFFTGLLLGANIYLWFTFYGVLWGNL AGYAALFVLLMFYRETVEAPSKAVVKKSGEPFSLAMLAALLMLSCADAIRGLYLPLVVNE KFGNPELMSYIWSAQAVFELLFMTVAGYWALKYGFKPVILFAGLFALIVYLVYANVDYLP FFFAMQPLYSFYVAVLLGVAMGYVQRMFFAQNRVRSQPVCRDYPNGFSGRLFPAAADRWH HAVHLLYPGCAHCRLHAAYHENDAERTRQQKTGKRTNFVSEAVCQTILKKNASPALYRKT FAVLK >gi|333607950|gb|AFDH01000029.1| GENE 7 7070 - 7927 759 285 aa, chain + ## HITS:1 COG:BS_folD KEGG:ns NR:ns ## COG: BS_folD COG0190 # Protein_GI_number: 16079487 # Func_class: H Coenzyme transport and metabolism # Function: 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase # Organism: Bacillus subtilis # 15 274 16 277 283 215 41.0 9e-56 MGMLMKTADLAGRLRESIRIETDAWKKRGIEPSLAVVLLKGDPASEYYARAKEKTAQKLG IGYRLMEFDPAITQSELLGHLGELNEDKSVHGIMLELPLPRHLNPSEAFELIRSDKDVDG ITPGSKLACYLGTEGLYPATPQSCIRILQEFGFGLKGRHVVLVGRGETVGRPLMPMLLRE HATLTVCHSHTENLARHIAGADILITAAGRAGMVTADMVHPDLVVVDAGINETDTGLTGD VSPDALQRVKAMTPVPGGVGTLTTLILFENLLKAVGMQIGEGAHK >gi|333607950|gb|AFDH01000029.1| GENE 8 7924 - 8544 607 206 aa, chain + ## HITS:1 COG:Ta1477 KEGG:ns NR:ns ## COG: Ta1477 COG3404 # Protein_GI_number: 16082442 # Func_class: E Amino acid transport and metabolism # Function: Methenyl tetrahydrofolate cyclohydrolase # Organism: Thermoplasma acidophilum # 3 169 12 179 217 93 35.0 3e-19 MRVYDQSIREFLAEASSGSPVPGGGSIAALAAALGASMGSMTACLTTGAKFKEQEAAMLE NAELFRQAIVRFESLHEKDMASFSRFMKALKLPASTSAEKEARSLAIREASAYAADVPLE LMEACLGVMRRLAALAPEVNKNVVSDLGIAVLMLEAAVQSAWITVEINLNTMSGDSRNVY RDKGMLLLRESEEIKRNALIQVRERI >gi|333607950|gb|AFDH01000029.1| GENE 9 8687 - 9181 542 164 aa, chain - ## HITS:1 COG:no KEGG:BBR47_11200 NR:ns ## KEGG: BBR47_11200 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 1 164 1 164 164 166 52.0 2e-40 MNGLDLLKRGWEHAYGTEDWYAPLKDAVSGISAEQASWRPPGEAGNTIWETVNHLVYYKQ RLLEQLQGEEPDNWAKNNDDTFKTPDTHGSEEAWQRTLRELDAVHTRIGSLLGAKSDPDM DAVYRDSPIGFRIGSVIQHDAFHTGEIVLIRKLQGSWPATRHYE >gi|333607950|gb|AFDH01000029.1| GENE 10 9306 - 9929 386 207 aa, chain + ## HITS:1 COG:SMc00597 KEGG:ns NR:ns ## COG: SMc00597 COG5516 # Protein_GI_number: 15964919 # Func_class: R General function prediction only # Function: Conserved protein containing a Zn-ribbon-like motif, possibly RNA-binding # Organism: Sinorhizobium meliloti # 45 205 31 182 186 59 32.0 5e-09 MIMMVTHWILTSIGKRLNLYSEVVLENSALEFMNSQWYDWRGTGRSEDRLDRPGWLEAFL EKWELQAQVPPQPHERAALGELRQAMRAITECACTNSEPDRADIARLNEAMAEVPSRPVL AREEGGWRLERRTGDRGWAAVMGQVAVAFARLLAEEDVRRLKMCANEDCRWVFFDESRSR TARWCDDKMCGNLMKVRRFRKRRKEND >gi|333607950|gb|AFDH01000029.1| GENE 11 10051 - 11283 1238 410 aa, chain + ## HITS:1 COG:BS_ampS KEGG:ns NR:ns ## COG: BS_ampS COG2309 # Protein_GI_number: 16078509 # Func_class: E Amino acid transport and metabolism # Function: Leucyl aminopeptidase (aminopeptidase T) # Organism: Bacillus subtilis # 3 410 2 409 410 497 58.0 1e-140 MANQFERNLEKYAELAVKVGLNIQQGQSLWVNASIQQAPLTRFIAQKAYEAGAKSVHVEW MDDVITKLRYTLAPDDSFDTYPAWRAQAVEELAENGGAYLLIESGNPELLQGVKPERITA YSKAAGKALVKWREYMTSYKMTWSILAAPSTGWAGKVFPDLPEDEAVAALWEEIFKATRV DQDNPVQVWERHNATLRTKVEELNAKQYRKLHYRAPGTELSVTLPERHIWCGGSTVNEQG DAFNPNVPTEEVFVSPLKDGTNGVVRSTKPLSYQGNLIENFTLTFENGRVVDFQAEKGYE ALKGLLELDEGARHLGEVALVPHESPISASNIIFFNTLFDENASNHLALGKAFGFSIPDG TKMSVEELTKAGLNDSITHVDFMIGSAEMDIDGERADGTIEPIFRKGNWA >gi|333607950|gb|AFDH01000029.1| GENE 12 11528 - 12178 479 216 aa, chain + ## HITS:1 COG:BH0435 KEGG:ns NR:ns ## COG: BH0435 COG1713 # Protein_GI_number: 15612998 # Func_class: H Coenzyme transport and metabolism # Function: Predicted HD superfamily hydrolase involved in NAD metabolism # Organism: Bacillus halodurans # 87 203 1 117 125 142 53.0 3e-34 MGSEEMNVYEHLVQPERSGDLKKEVYAFLTENGHRETAEHCMKVGEKARELAVRFGADPE TAASSGYLHDISAVFSNDTRISVSVQLGIEVLPEEESFPMIIHQKMSKAIARDLFGVADP EILSAVECHTTLKKQASQMDKLLFTADKVAWDQKGTPPYLEELNRGLALSLDHAAFAYIR YLWSRKDTLRVVHPWLREAYADLSGRIGSEPETCGT >gi|333607950|gb|AFDH01000029.1| GENE 13 12166 - 12522 266 118 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_3750 NR:ns ## KEGG: GYMC10_3750 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 24 115 21 112 113 110 56.0 1e-23 MRNLSRGKIFALSIVLIVLLALFVYVQGNKMAYAERVRSYLLQEKSYKEEELASVKGIWG MKLPSFYTVVVFKDEPEVNYVYFSHNDVLQFDQWITPKGVEMGITPEKLKHTEKRREG >gi|333607950|gb|AFDH01000029.1| GENE 14 12714 - 13943 1089 409 aa, chain + ## HITS:1 COG:BS_ykuC KEGG:ns NR:ns ## COG: BS_ykuC COG0477 # Protein_GI_number: 16078467 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus subtilis # 1 379 3 394 430 95 23.0 2e-19 MFKNTFVRTIILSNVLLQLGIWVRNFAILLYVTDITNNNPKFVSLISVAEFTPIFLFAII GGTFADRWKPKRTMIVCDLLSALSVFAVLLVVMFGSWQALFFATLVSAILSQFSQPSALK LFKQHVPEEQLQGVMAMFQTLMAIFMVFGPILGTFVYQHYGLEISIAVMGVCFIASAAVL TSLPADQENPAKAERNFMQEMKDGLRYVWNSRALKTLGGTFVVSGLAVGVIQPLMLFIAI ENLGQDKLFLQWLLAANGMAMLAGGGFVMALSKKMQPQSLLAAGLIASTVGTIGIGLSTS VPLTIFFQVVNGLFYPCIMIGINTMMMKNTEAAFIGRVGGVLTPMFMGFMVIGMSAAGFM KDILSLQTVYAGSGILFLLGALLLVPLMLRRTEPPRESQGAAAAADSTD >gi|333607950|gb|AFDH01000029.1| GENE 15 14131 - 14604 312 157 aa, chain + ## HITS:1 COG:CAC0763 KEGG:ns NR:ns ## COG: CAC0763 COG1846 # Protein_GI_number: 15894050 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Clostridium acetobutylicum # 1 157 1 157 157 197 74.0 5e-51 MNKEEQVIMGFRDLFNKLVWLNKDKMENSLKGYKPSEVHCIEYIERNVDSNVTKLAESFY MTRGAISKITKQLLKKGLIESYRKPDNKKEIYFRLTEQGKVIYNIHEDLHKEFQERDKAV FEQVTEEQFDSMLSFVEKYSRHLEAEIKKRGLDIKSE Prediction of potential genes in microbial genomes Time: Sun Jul 17 08:07:34 2011 Seq name: gi|333607913|gb|AFDH01000030.1| Paenibacillus sp. HGF7 contig00072, whole genome shotgun sequence Length of sequence - 42061 bp Number of predicted genes - 38, with homology - 33 Number of transcription units - 23, operones - 11 average op.length - 2.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 151 81 ## - Prom 235 - 294 6.8 - Term 329 - 361 4.0 2 2 Tu 1 . - CDS 430 - 1110 585 ## COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases - Prom 1179 - 1238 4.9 3 3 Tu 1 . - CDS 1312 - 2412 893 ## COG2008 Threonine aldolase - Prom 2604 - 2663 7.5 + Prom 2463 - 2522 4.8 4 4 Op 1 . + CDS 2631 - 3131 298 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes + Prom 3133 - 3192 1.6 5 4 Op 2 . + CDS 3213 - 3386 58 ## + Term 3423 - 3458 -0.9 + Prom 3481 - 3540 6.3 6 5 Tu 1 . + CDS 3567 - 5003 1198 ## COG0477 Permeases of the major facilitator superfamily 7 6 Tu 1 . - CDS 5151 - 6689 1214 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains - Prom 6713 - 6772 3.3 - Term 6814 - 6853 10.0 8 7 Tu 1 . - CDS 7091 - 8812 1006 ## COG0442 Prolyl-tRNA synthetase + Prom 9062 - 9121 3.8 9 8 Tu 1 . + CDS 9216 - 9416 129 ## + Term 9533 - 9560 -0.8 - Term 9274 - 9323 10.1 10 9 Op 1 . - CDS 9330 - 9884 503 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 11 9 Op 2 . - CDS 10062 - 10850 568 ## Dhaf_0028 hypothetical protein - Prom 10906 - 10965 2.7 - Term 10941 - 10975 4.4 12 10 Op 1 3/0.286 - CDS 11039 - 12688 1237 ## COG2207 AraC-type DNA-binding domain-containing proteins 13 10 Op 2 . - CDS 12708 - 13691 860 ## COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component - Prom 13863 - 13922 6.5 + Prom 13741 - 13800 7.9 14 11 Tu 1 . + CDS 13975 - 14613 279 ## COG0288 Carbonic anhydrase + Term 14635 - 14676 12.0 - Term 14623 - 14663 10.2 15 12 Op 1 2/0.429 - CDS 14746 - 15396 243 ## PROTEIN SUPPORTED gi|223039927|ref|ZP_03610210.1| ribosomal protein L22 16 12 Op 2 . - CDS 15454 - 16224 854 ## COG0861 Membrane protein TerC, possibly involved in tellurium resistance 17 12 Op 3 . - CDS 16276 - 16677 423 ## COG1815 Flagellar basal body protein - Term 16771 - 16814 12.2 18 13 Op 1 . - CDS 17059 - 17556 293 ## PPSC2_c5302 membrane protein - Prom 17606 - 17665 1.6 19 13 Op 2 . - CDS 17675 - 18592 718 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily + Prom 18569 - 18628 3.8 20 14 Op 1 . + CDS 18715 - 20148 1070 ## COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs 21 14 Op 2 . + CDS 20171 - 20293 84 ## 22 15 Op 1 4/0.286 - CDS 20242 - 21471 1185 ## COG2124 Cytochrome P450 23 15 Op 2 1/0.429 - CDS 21551 - 22171 614 ## COG1309 Transcriptional regulator - Prom 22207 - 22266 4.2 - Term 22259 - 22294 1.7 24 16 Op 1 2/0.429 - CDS 22398 - 23315 743 ## COG0492 Thioredoxin reductase 25 16 Op 2 . - CDS 23365 - 23856 442 ## COG1959 Predicted transcriptional regulator - Prom 24077 - 24136 6.6 + Prom 23902 - 23961 5.2 26 17 Tu 1 . + CDS 24089 - 24541 204 ## - Term 24561 - 24598 4.5 27 18 Op 1 1/0.429 - CDS 24643 - 25521 980 ## COG0451 Nucleoside-diphosphate-sugar epimerases - Term 25568 - 25597 1.2 28 18 Op 2 . - CDS 25621 - 26706 1272 ## COG0628 Predicted permease - Prom 26917 - 26976 5.7 + Prom 26796 - 26855 3.2 29 19 Tu 1 . + CDS 26902 - 27810 453 ## COG0583 Transcriptional regulator 30 20 Tu 1 . - CDS 27807 - 28796 726 ## COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) - Prom 28819 - 28878 6.4 - Term 28901 - 28947 13.6 31 21 Op 1 . - CDS 28998 - 29183 105 ## gi|253574404|ref|ZP_04851745.1| YdjC family protein 32 21 Op 2 2/0.429 - CDS 29204 - 30385 1091 ## COG1972 Nucleoside permease 33 21 Op 3 . - CDS 30382 - 31095 781 ## COG0813 Purine-nucleoside phosphorylase - Prom 31145 - 31204 2.0 34 22 Tu 1 . - CDS 31225 - 32643 865 ## GYMC10_6243 transcriptional antiterminator, BglG - Prom 32702 - 32761 3.2 - Term 32795 - 32838 13.1 35 23 Op 1 35/0.000 - CDS 32894 - 34627 218 ## PROTEIN SUPPORTED gi|225088774|ref|YP_002660041.1| ribosomal protein S16 36 23 Op 2 . - CDS 34624 - 36408 240 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 37 23 Op 3 7/0.000 - CDS 36440 - 39688 2542 ## COG1020 Non-ribosomal peptide synthetase modules and related proteins 38 23 Op 4 . - CDS 39793 - 42060 2066 ## COG1020 Non-ribosomal peptide synthetase modules and related proteins Predicted protein(s) >gi|333607913|gb|AFDH01000030.1| GENE 1 1 - 151 81 50 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MYQGKLRKMTLLLLGLYTGLIFYFLYIGFNRSSHLADRGMRCNLTPHGIP >gi|333607913|gb|AFDH01000030.1| GENE 2 430 - 1110 585 226 aa, chain - ## HITS:1 COG:TM0742 KEGG:ns NR:ns ## COG: TM0742 COG0639 # Protein_GI_number: 15643505 # Func_class: T Signal transduction mechanisms # Function: Diadenosine tetraphosphatase and related serine/threonine protein phosphatases # Organism: Thermotoga maritima # 4 226 2 203 209 132 38.0 6e-31 MKRTLVVSDIHGEIDKFTRLLEKVSYNPLRDQLILLGDYVDKGPDSRRVVEKVMQLHREG AIVLKGNHDHMMVKSFERDPVFIERWFRNGARATLTSYEHAGAVSEAPAPETMELTPLLE EHLSFLDGLQTYYETEDTIFVHAGVHPSTSLAETDAYVLMWIRDEFHKGYRGEKTVVFGH TITETLHGKRDVYFGDNNIIGIDGGAVYGGVLHCLELPARNVYSVD >gi|333607913|gb|AFDH01000030.1| GENE 3 1312 - 2412 893 366 aa, chain - ## HITS:1 COG:lin0333 KEGG:ns NR:ns ## COG: lin0333 COG2008 # Protein_GI_number: 16799410 # Func_class: E Amino acid transport and metabolism # Function: Threonine aldolase # Organism: Listeria innocua # 6 360 4 358 360 455 58.0 1e-128 MNDKESLKEAFKRAPYPLGGNGPRDIGILKQAFDEIEETLESDVYGTGTLIEGFQSKIAA YLGKETAVFFPSGTMAQQIALRIWCDEKGSRRVAYHPLCHLEIHEEDGLKELHRIEPVLL ADKDRLITLEDVKQLDGEISCLLLELPQREIGGQLPAFEELEAISASCRERGIKLHLDGA RLFEITPYYGKSAAEIGALFDSVYVSFYKGIGGIAGAVLAGGRDFTERSKVWKRRHGGDL ISLYPYIITSDYYFDRRIGRMAQYFEEAKELAAFFNDCEGVYTKPAVPVSNMFHIHFKLP ETAILPILIAVAEATGVGLASWLHEREEGTCYTEISVGDRYENVPKDKIREAFRLLKEKL EAALSA >gi|333607913|gb|AFDH01000030.1| GENE 4 2631 - 3131 298 166 aa, chain + ## HITS:1 COG:SPy0477 KEGG:ns NR:ns ## COG: SPy0477 COG0494 # Protein_GI_number: 15674593 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Streptococcus pyogenes M1 GAS # 5 149 4 148 158 89 34.0 4e-18 MGMSDYYKNLREKAGSELIFMPSVAGIIRNESGKILLQNKGNGEKWSLPAGAIELGETPA EAIVREVREETGLYVFPSKLIGVFGGKEYRYQYPNGHKVEYNVFMFDCVVQSGTLNPLDS ETAELRYFSPEQMPELALPYPKHLFSQKENNEVYFQWEDDYLKNLM >gi|333607913|gb|AFDH01000030.1| GENE 5 3213 - 3386 58 57 aa, chain + ## HITS:0 COG:no KEGG:no NR:no METIFVPVKNKIKKSGDQAATGSVCLFSCNVKTKFHSYNRRMLFASRNGICKVNGRF >gi|333607913|gb|AFDH01000030.1| GENE 6 3567 - 5003 1198 478 aa, chain + ## HITS:1 COG:MT2395 KEGG:ns NR:ns ## COG: MT2395 COG0477 # Protein_GI_number: 15841836 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Mycobacterium tuberculosis CDC1551 # 12 432 5 421 537 149 30.0 9e-36 MNVQANSKRTRQLSLLLVLVFSLFVACMTADMVNPVLPLIRKDFGASDAQAGWVVTGVLL VIAIGVPFYGRISDFFSLRRLYPLALLIFAAGSLVCAAAPTLLVLVLGRMLQGAGSAAIP VLSVITVSQVLPSGSRGAALGILAGSIGIGTAVGPIFGGLVGQLFGWPALFWITLVLLLA LVPCALYVLPGGRPGTETAKERRFDLLGGIVFGLAAGLFLFGVTQGQAEGFRSLSSWGSL AGASLMTAAFIWRIFTAEHPFLPPALLANKGYMAAVLAGFFTMFAYVSSLVFVPLLIVEV NGLSPGAAGLVLLPGAAAVAVFSPAAGRLSDRIGAKIPVAAGLSVMGISLLFISTFAAGS SPLLAATGMLGLGFGVAFTNSPANNAAASTLENEQLGAGLGIFQGALFLGAGTGASVIGA FLAARKEAAQDPLNPFYVLDAAPYSDAFLAIAAAVIIALVFSAGLQSGKQKNSSETSR >gi|333607913|gb|AFDH01000030.1| GENE 7 5151 - 6689 1214 512 aa, chain - ## HITS:1 COG:CAC3339 KEGG:ns NR:ns ## COG: CAC3339 COG0488 # Protein_GI_number: 15896582 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Clostridium acetobutylicum # 1 504 1 507 518 417 41.0 1e-116 MSLLEITGMSHSFGDRTLYKQVDFELFKGEHLGVVGQNGTGKSTLLGILTGEIIPDEGTV RWQSNIRIGYLDQYAVIDGNRTIGEYLKTAFASLFELETKMNALYEESASTGMEEPLLKA ARYQEELERLEFYEVDSTIQKVVNGLGLSAIGTGRPIQELSGGQRAKVILAKLLLEKPDV LLLDEPTNFLDKEHVSWLADYLTSLTNAFVVISHDAAFLDKITTGICDIEGGSIKKYPGN YSHFLRQKEHLREDHIRQYNAQQKTIQRTEAYIRKNKAGVNSRIARGRQKQLDKIERIEA PAFVSRPFIRFRELPLGSQTALRVNELEAGYAAPLLPKLTFSVRSGEKIVITGFNGIGKS TLLKTLLRRIPVISGGFRFGEHVKTGYYEQDLIWEDDALTPVRFLADCYPQLNNKEIRRH LAQCGVNETRASQTLRTLSGGEQSKVKLCGLLLSPCNVLIMDEPTNHLDAEAKDALRDAL IHFGGTLILVSHEQKFYEGWVDRVLEIGSRKG >gi|333607913|gb|AFDH01000030.1| GENE 8 7091 - 8812 1006 573 aa, chain - ## HITS:1 COG:CAC3178 KEGG:ns NR:ns ## COG: CAC3178 COG0442 # Protein_GI_number: 15896426 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Prolyl-tRNA synthetase # Organism: Clostridium acetobutylicum # 1 565 1 561 570 626 53.0 1e-179 MRQSRLLLTTLRESPADAEVISHRLMLRAGFIRQLAAGIYTYLPLGRRVLRKAEQIVREE MDRAGAQEMLMPVMQPAELWKESGRYSVYGPELMRLNDRHDREFTLGPTHEEVITSIVRG EINSYRKLPVTLYQIQTKFRDERRPRFGLLRGREFLMKDGYSFDTDWEGLDESYQQMFQT YSRILTRCEVNFRAVEADAGAIGGEGGTHEFMALADIGEDTIAACTVCEYAANLERAESR AVRTDSVERSEEMAVKFHTPDIRTIGQLVQSLGIRPSDIMKTIVYTADTRPVAVVVRGDR EVNEIKVKNYLRADDLSITDAAAVEEATGAPAGFVGPLGLNIPLLVDEEVLGMAYGIAGA NEADYHYRNLNPGRDLANSEVGDFRQAAEGDRCPRCTEGVLKLSRGIEIGHVFKLGTKYS DKLEASFLDAAGKSTRMIMGCYGIGVSRILSAVIEQNHDTNGIIWPLALAPYQAHLIPVS IKDDVQVQAANDIYRRLQENGVEVLMDDRDERPGVKFKDSDLIGIPFRVVFGKDAGQGKV EFVERRSGLKETITFQAACERILDQVRLSKPTY >gi|333607913|gb|AFDH01000030.1| GENE 9 9216 - 9416 129 66 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MESLTDFVYTKVMEMSHTAIHAKKASAKPQGTIQGGVILIEYQVPVQRNFIALFVETFIQ AGVETA >gi|333607913|gb|AFDH01000030.1| GENE 10 9330 - 9884 503 184 aa, chain - ## HITS:1 COG:BS_yyaR KEGG:ns NR:ns ## COG: BS_yyaR COG0454 # Protein_GI_number: 16081126 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Bacillus subtilis # 23 183 20 173 173 100 34.0 1e-21 MDIRIRELTAEDEFEGIEVDGSFIVDSVLVLTLEDRRIGYAVEEVAHYTKRYADEPDAET EDTGYAGYIGNPDQVMYLACMDNRIAGQVLLRKNWNGYAYVEDIKVDPAYRRYGAGRRLI EQAENWARAGGMPGIMLETQNNNVRACKFYESCGFVLGGFDSCLYKGLDKQSNEIALYWY LIFD >gi|333607913|gb|AFDH01000030.1| GENE 11 10062 - 10850 568 262 aa, chain - ## HITS:1 COG:no KEGG:Dhaf_0028 NR:ns ## KEGG: Dhaf_0028 # Name: not_defined # Def: hypothetical protein # Organism: D.hafniense_DCB-2 # Pathway: not_defined # 12 247 9 245 271 249 49.0 6e-65 MNEPGMVTLNTENISREHICCAISDKKCANGVQLKKEWLEQRFQEGLRFKKLDVRQKVFI EYIPAEYAWCPVEAPGYIYINCFWVAGSYKGKGYGKKLLRECLEEAGATNGAIAVTSRTK RPYLSDKSFFTHNGFEVCDQAPPYFELVVQKFKEDAPTPKFKQSVHEQKVDVVKGFQVLY TAQCPYTDHYVGELEDCARERSIPVETRRIVSTGEAQSAPTPYTSYSLFYNGHFITHEIL TRSKFEKNMDGWIQKYGLPGAE >gi|333607913|gb|AFDH01000030.1| GENE 12 11039 - 12688 1237 549 aa, chain - ## HITS:1 COG:BS_yesS KEGG:ns NR:ns ## COG: BS_yesS COG2207 # Protein_GI_number: 16077768 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Bacillus subtilis # 150 295 611 759 761 77 28.0 1e-13 MNDNQDRSFARRASFYELTGISRETASSGWKQEAAGADSYYVMAVTGGSGGMTLNGESYA AERGKCYLAAPGSGACIQSAAADLSFYLLKFEVLARQTVGEKAASDFADAADRRDEAPSR MRGAEQENLLEPGEIVCLSFASCVTMLEALYEHRRPATEFESFDSYVRFQEFLRFLLQQR AAGSGGHDPMQAVESSIAVIRDNYRSTQTVEGLASAAGLDRWKYSRLFKERTGTTPLDFL NRIRIERTKRLLVLTEDPLSGIAGDAGFNNEYYLNRRFKQTVGITPGQYRRNHREHVRVF APCLEDFLLALEITPVMQWYSEGWGKQDYLGMGDVPVFDVSDGSLEGLTKEKPDFILLDG GTHPSGYSRLAPTYTMAHPGEDWKSTLDKTADLLGKKGRVRDIIGEYESRADKAKQALER SVRDQTVAFLRISAEAVILYGGPEQGYTGPVLYGDLGLTPHRLVSQLTGRSRRSVVLTSE WLDKLDADHLFVTFDKRWGHTPGAREDERLALLPGVRNNSVYEVDFLTWMNYGILSRSKK IDDVLKVLA >gi|333607913|gb|AFDH01000030.1| GENE 13 12708 - 13691 860 327 aa, chain - ## HITS:1 COG:alr2583 KEGG:ns NR:ns ## COG: alr2583 COG0614 # Protein_GI_number: 17230075 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-hydroxamate transport system, periplasmic component # Organism: Nostoc sp. PCC 7120 # 47 327 55 328 328 109 29.0 7e-24 MREKRSKRAMWNLLAVLALTASLTGCGGPAERAEKAAVQSTPAGEKSTENKRVVKDAFGE VEIPAQPKRVAAIYMEDYVTALGVTPVVQWYHPNWGIQEYLKLNVPKFDMTGSIEALLDA SPDLIIVDGGADKARYDMYSKVAPTYRLPDEMLNDASAILKATADLLGMPEKADAILKEY RKKVDDAKTALEKAVGTEKVAVIRLNVGEKTFTLFGINNRFIGSILYRDLGLTPPPMVKE MKEFQQIISEEMIPQIDADHIILLPSNGTWASEENKEAVQLLKSPFWKSVPAVKKGHVYQ VERTHWQTGAFLANGMKIDDLLKLLIK >gi|333607913|gb|AFDH01000030.1| GENE 14 13975 - 14613 279 212 aa, chain + ## HITS:1 COG:BS_yvdA KEGG:ns NR:ns ## COG: BS_yvdA COG0288 # Protein_GI_number: 16080520 # Func_class: P Inorganic ion transport and metabolism # Function: Carbonic anhydrase # Organism: Bacillus subtilis # 1 184 4 187 197 207 51.0 9e-54 MSTIHEILAHNRIFVQEKQALPFETIRYPETKIVILTCMDTQIPELLPKALGIRNEDAEV IQNAGAVVSHPSGSILRNILLAICKLKAKEVYVIGHHECGLANFRSADDSESVRQFGDSD PYMQTLSDAGIDLDGWLTRFSSLEESIADSVCMIRSHPLFPESVLVHGLVIHPVTGRLDV VVEGKHIQPKEGVSALLNAEAAPLDATIERRK >gi|333607913|gb|AFDH01000030.1| GENE 15 14746 - 15396 243 216 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|223039927|ref|ZP_03610210.1| ribosomal protein L22 [Campylobacter rectus RM3267] # 4 206 8 203 208 98 33 7e-20 MEQWITETMEAFGYFGIFLLIALENLFPPIPSEVILTLGGFMTTTSALTAFGVILAATAG SVAGAVCLYGAGKLMSMERLQSLAARHGKILRLKPEDIGKAGSWFDKYGVWAVFLGRLVP LVRSLISIPAGSAGMSFVPFLLLTTAGSLIWNSVLVYVGAAVGASWETIVGYMDIYSTVI YAGLGLSCALVGFLYVRRRIVKSERGKKSFEIGNDK >gi|333607913|gb|AFDH01000030.1| GENE 16 15454 - 16224 854 256 aa, chain - ## HITS:1 COG:BH2553 KEGG:ns NR:ns ## COG: BH2553 COG0861 # Protein_GI_number: 15615116 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane protein TerC, possibly involved in tellurium resistance # Organism: Bacillus halodurans # 1 250 1 250 265 315 69.0 5e-86 MDVSLILEYGWVLLVLVGLEGLLAADNALVLAIMVKHLPEEARKRALFYGLAGAFVFRFL SLFIISFLVDVWQVQAIGAVYLIFIALNHIFRKVLVKKGENGSKKEKEGKAGSSFWATVF KVELADIAFAVDSILAAVALAVALPESGLPRIGGMDGGQFFIVFAGGLIGLIIMRFAASY FVNLLNRRPGLEIAAFVIVGWVGVKLIVYTLSHPALSVLPEGFAKLPAWKYTFYAVLVLI ALCGWFLSKEKKETAV >gi|333607913|gb|AFDH01000030.1| GENE 17 16276 - 16677 423 133 aa, chain - ## HITS:1 COG:BH2461 KEGG:ns NR:ns ## COG: BH2461 COG1815 # Protein_GI_number: 15615024 # Func_class: N Cell motility # Function: Flagellar basal body protein # Organism: Bacillus halodurans # 1 130 3 129 132 78 35.0 3e-15 MLVSSTTRMNEKALDIAAARHQAILSNLANVDTPGYKSRFVSFEEELEKATEGKRPLEGI TSHKRHFKISGSGEAGLINTAVLGPYVFNTNGNSVDMDYEMSLMAKNQLAYSVFAERVSG HYKKMNGLLRDLK >gi|333607913|gb|AFDH01000030.1| GENE 18 17059 - 17556 293 165 aa, chain - ## HITS:1 COG:no KEGG:PPSC2_c5302 NR:ns ## KEGG: PPSC2_c5302 # Name: not_defined # Def: membrane protein # Organism: P.polymyxa_SC2 # Pathway: not_defined # 1 162 38 199 211 183 67.0 2e-45 MMELPTTKKENVYFGLMMCCGMVVGMMSYNLVTNGLIGTISWKGILVQFVLCFITAFLVE SFIVGPVAKKIAFSLPFDKSKQVPLILSLSFFMVIGMVLIMSMYGLATSYLLNPPVGTSL LESYFSLLVKNVSFALPLQLLIVGPTARYLFKRFVKSEEIAVSAS >gi|333607913|gb|AFDH01000030.1| GENE 19 17675 - 18592 718 305 aa, chain - ## HITS:1 COG:YPO1203 KEGG:ns NR:ns ## COG: YPO1203 COG0697 # Protein_GI_number: 16121495 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Yersinia pestis # 11 288 21 288 296 85 30.0 9e-17 MIPFNYILMCLIFGTTFLAIKVGIDAGASPFFSAGVRFFLAGAVLFIVMVTQKKARLSLL LRKEMMLTGLGLTFGVFASLYWAEQYLSSGIAAVLSATAPLMIMLLQTGMTRQKMSASSW AGCLVGFAGVVILLVPGMTVAFSTVWVAGCIAVLTGQVFYSAGTVYSRRVIRRFSDTSPI ALNAAQMLYGGLMLLLLSLFTEQVHMEAMFVPEAVFSLLYLIVFGSMMGHTIFYWLVAKT NPVFPSTWLYISPLIALSLGVVLYGEPLSFLSLAGGVTIIAGILLINLKSLRQLAGARSR LVERS >gi|333607913|gb|AFDH01000030.1| GENE 20 18715 - 20148 1070 477 aa, chain + ## HITS:1 COG:PH0207 KEGG:ns NR:ns ## COG: PH0207 COG1167 # Protein_GI_number: 14590140 # Func_class: K Transcription; E Amino acid transport and metabolism # Function: Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs # Organism: Pyrococcus horikoshii # 67 469 8 422 428 190 28.0 5e-48 MVERENRSSVHSDKLFEQIYDYLLERIRRGEWKAHDKLPSIRSLAADFRVHRLTVFKAYQ LLKRNGDVYVKDKSGYYAHPGSQSMLGPLNDPIVSAYVHESHLSEIHQVQADYQFSKALL DPNLLPNLYLSEYVKKVFDLYPKVLGTYSTVQGDQELREALCGYFTKGFHFFVSPDELLI TSGSQEAIDLVARVLVRPRDAVMLERPTYSPAIDVFSRQGAKIIPVDIHPSGYDLEQVER IMQTDRPRLFYLNPTFHNPTGFTVPAEQRKKLVELAETYKCLLIEDDPGRDIYFGDEPPL PLFSYDTAGYVIYLRSFSKYIAPGLSIAAVACRPSFMNYLIRAKSLSDSGAPLLNQKIFL HYFFSERMQQHLAKLRIALAVRKDIMEEELSGTGWQWTSPAGGFNLWVELPASVPMDRLL SRCMEQSLTFVPGMICDPLREPTSRVRMSYSYLNEAELRAGLRRFKEVVFSLLSEVG >gi|333607913|gb|AFDH01000030.1| GENE 21 20171 - 20293 84 40 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MWLIPTLSAADRHASAALQSEFRGQKRTGRLVSERSFPWL >gi|333607913|gb|AFDH01000030.1| GENE 22 20242 - 21471 1185 409 aa, chain - ## HITS:1 COG:BS_cypA KEGG:ns NR:ns ## COG: BS_cypA COG2124 # Protein_GI_number: 16079727 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Cytochrome P450 # Organism: Bacillus subtilis # 4 409 12 410 410 298 42.0 2e-80 MEKMTGGDLNSPETMRDIISFYKRLAAQKESLIRLDDFYGMGGAWIAFRHDDVSAMLKDP RLVKDMRKYVPQNEPEAAGASTYVGKLLEWLRNMPNMLSVDPPDHTRLRRLASKAFTPQM IEGLRPRIQQIADELLDAVQERGRMDLVADFAYPLPIIVISEILGIPAADRSLFRGWTQK LLQAAVDSSQGSAVEEALEEFIGYIRTLLDEKRRNPGTDVTSGLVQAYEQGDKLSENELL STIWLLIIAGHETTVNLIGNGTLALLRHPGQMRLLRETPSLLPGAVEEMLRMEGPIVIAS RFAGEDIAMHGKVIRQGEMVLLSLAAANVDPQKFSDADTLDITREENEHLAFGKGIHLCL GAPLARLEGQIAFGTLLRRLPDLRLAVEPERLVYNHGKLRSLTSLPVLF >gi|333607913|gb|AFDH01000030.1| GENE 23 21551 - 22171 614 206 aa, chain - ## HITS:1 COG:lin2076 KEGG:ns NR:ns ## COG: lin2076 COG1309 # Protein_GI_number: 16801142 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 7 186 4 190 206 72 26.0 6e-13 MPLQLYEKEEIFEACLTVFARNGYKDTSTGMLAEAAGISKALIFHHFKSKKMLYLSLLDH CFEKAREELRVDTIPDYRDFFEAIDAYSRKKLDYFRKHPDEIKLIYEVYYSTPEELKEDI AKKYGHVLASKYEVWERLFDKVPLRNGVDRKHAFELIVITLEHFENKFVAEVTDLSAIGD DYIENMFTKMKEFCVMIRQGIAQDYA >gi|333607913|gb|AFDH01000030.1| GENE 24 22398 - 23315 743 305 aa, chain - ## HITS:1 COG:BH0657 KEGG:ns NR:ns ## COG: BH0657 COG0492 # Protein_GI_number: 15613220 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Thioredoxin reductase # Organism: Bacillus halodurans # 2 300 3 301 305 417 66.0 1e-116 MEQKIDVGIIGGGPAGLNAALVLGRARKSVVVIDEERPRNRVTRESHGFLTRDGISPAEF RRIAREQIAAYPSVRFVTDSAVTVTGADGNFQITTGQGTVYRCKKLLFAAGKKDLPLDIS GLADVYGKSAFVCPYCDGWELRDQPLVLIVKGGAAAHSARTVSGWSKRLTICTNGPDELT DEQREGLKAHRIPVFDSPIVRIESTGGMVEQVVLEDGSAIPCKGIFFAPKIAAGSDLPRE IGCRMTEGGSVAADPFGKTNVPGVFSAGDAATEMYQAITAASLGSLAAVGINTELLAEAW DSDRI >gi|333607913|gb|AFDH01000030.1| GENE 25 23365 - 23856 442 163 aa, chain - ## HITS:1 COG:CAC3525 KEGG:ns NR:ns ## COG: CAC3525 COG1959 # Protein_GI_number: 15896762 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Clostridium acetobutylicum # 1 144 1 138 168 119 38.0 3e-27 MQFSKSTGYALHALIHLAHTERGRNVGIKELSAWLGVSESYLSKIMSKLRQDGIVRAVPG ASGGYELARETDQITFLDVIQVIEGRQHMYECFKISEEHHPMFFESEILEPESSDGTDHR ECLVKKVMIGAERHMNDYLKGHTIQSVLDSASAGSGERIDKKS >gi|333607913|gb|AFDH01000030.1| GENE 26 24089 - 24541 204 150 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKLNHTAFIFIWLVGAGIVFYGTGTLELYLDYKRANSVYSNIFVLDSFKILLYIVTGIYS GTLFMTSKLTVHRALFLTIFILFLLLSFYPLLIFAVPLPGMDVIYPNYQKFAFIAGLSLF MTLYKFRTKSPSRPQPAGEPANGRAAGFRD >gi|333607913|gb|AFDH01000030.1| GENE 27 24643 - 25521 980 292 aa, chain - ## HITS:1 COG:lin1855 KEGG:ns NR:ns ## COG: lin1855 COG0451 # Protein_GI_number: 16800922 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Listeria innocua # 4 292 3 291 291 269 48.0 4e-72 MQNVLILGGTRFFGKKLTANLLRSGADVTILTRGNAADSFGPGVKRLHADRTDAAALRQV IGSADYDVVYDNICYTPQDAEHAVQLFAGRTGRYIVTSSKSVYPFGGPRKKESDFDPYGY PLPSVYPDQPDYAEGKRLVEAVLFRKAPFPAAAVRFPIVLGPDDYTRRLHFHIEHIKQGL PLGIPNREALLTFIDSDEAASFLGWLGTSALEGPVNACSKGEITPGKIVSLIEEALNKQA HVADKTEEEHMSPFGVPESWYMDTSKAETAGYTFRHLDDWLPDLIRKLAGES >gi|333607913|gb|AFDH01000030.1| GENE 28 25621 - 26706 1272 361 aa, chain - ## HITS:1 COG:BH2921 KEGG:ns NR:ns ## COG: BH2921 COG0628 # Protein_GI_number: 15615484 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Bacillus halodurans # 4 355 3 357 361 221 39.0 2e-57 MYLQSRFFRVCLGIISVLLIILLFSKISFVFNPLITMINILIVPFMMAGFFYYLLRPVIQ YLTSRKLNKVLSILLVYFVLTAIVIIFVVGVWPTLQRQVENFVNGVPGLIENFKQQMGRL QQNRMFSMFAGSESDLSTKLSEYLNRGITAASDYVSNVISILTNFVIIIATVPIILYYML KESEHIPSSILTVIPRRYRRDGKEVLANIDSALSGFIVGRVIITSLLGVMLYIGFLIIDL PYSLLLAIAATILNIIPYIGPILGAIPTIIVAFTVSPAMVAWVLVVTVIAQQIEGNLLSP HIYGKRLDIHPLTTVILLLVAGDIAGILGVILAIPAYIVLKIIIVRIYSLFLAEKVEELV E >gi|333607913|gb|AFDH01000030.1| GENE 29 26902 - 27810 453 302 aa, chain + ## HITS:1 COG:PA5029 KEGG:ns NR:ns ## COG: PA5029 COG0583 # Protein_GI_number: 15600222 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Pseudomonas aeruginosa # 1 298 1 301 301 217 40.0 3e-56 MDLKKLHYFIAVAEELHFNRAAKKLNMTQPPLSQQIQVLEEELGVKLFERTKRQVRLTPA GTVFLEESRSLVAQLEQSIKKTQLTGQGKIGNLSIAFVDSAVGGTMVDVLKAFRERFPDV QLTLTEMTTTQQLQALHDAKVDVGFLRSADPSPHVTSRLHANESLLAAIPVTHRLAKQES LSVHSLADEPFILFPRDKGASFHDLILDFCGKHGFQPRIVQEAVQMYTIVNLVAAGIGIS IVPSSVSAFRREDVVFRSFSEIAPSVPLYASWKTDRNETVLMNFLDVLEEKTAGEASRTS HR >gi|333607913|gb|AFDH01000030.1| GENE 30 27807 - 28796 726 329 aa, chain - ## HITS:1 COG:DR2317 KEGG:ns NR:ns ## COG: DR2317 COG0667 # Protein_GI_number: 15807308 # Func_class: C Energy production and conversion # Function: Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) # Organism: Deinococcus radiodurans # 1 317 1 312 315 274 47.0 1e-73 MKYRKLGKSGLSVSEMALGNWITHGAQVDDRTAQACVNAALDAGITTFDTADVYSETRAE SVLGVSLKGIRRESIELCTKVFHPTGSGPNNRGLSRKHILEGCDASLRRLQTDYIDVYYA HRFDSDVSLEETFLAFSDLVRQGKVLYIGVSEWTAEQIKRGAALARELHVFFVASQPQYS MLWRVIEGEVIPACEREGIGQVVWSPLAQGILSGKYAAGKPVPEGSRASAEAGAPFFDRL AGQWLRNEVLQAVGRLRPLAEESGLTMPQLALAWVLQNPQVSSAIIGASKPEQVQENVKA AGVRLDAEVMRQIDLILSGIAEFDPSKTG >gi|333607913|gb|AFDH01000030.1| GENE 31 28998 - 29183 105 61 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|253574404|ref|ZP_04851745.1| ## NR: gi|253574404|ref|ZP_04851745.1| YdjC family protein [Paenibacillus sp. oral taxon 786 str. D14] YdjC family protein [Paenibacillus sp. oral taxon 786 str. D14] # 1 61 236 296 303 72 49.0 8e-12 MQQGVTELIFHASFETEELKEITDTWPVRQKEYEVFRDPDIRHILAQENIKLIKWRNLRD L >gi|333607913|gb|AFDH01000030.1| GENE 32 29204 - 30385 1091 393 aa, chain - ## HITS:1 COG:BS_nupC KEGG:ns NR:ns ## COG: BS_nupC COG1972 # Protein_GI_number: 16080992 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside permease # Organism: Bacillus subtilis # 1 393 1 393 393 481 72.0 1e-135 MKYALALIGLIVILSLAWLVSSDKKNIKYRPVLVMIALQIILGMVLLKTGVGEFLVKGFA DGFAKLLGFANAGTDFVFGGIVNEGIHSFFFHVLMPIVFMSVLIGILQYYRILPFIIKYI GLALSKVNGMGKLESYNAVASAILGQNEVFISIKKQIGLLPRNRLYTLCASAMSTVSMSI VGSYMTMLKPEYVVAALVLNLLGGFIIASIINPYEVKPEEDLLEVREESKQTFFEMLGEY IMDGFKVVVIVGAMLVGFVALIAMINGIFSSIFGISFQNILGYVLAPFAFLLGVPWQEAV KAGSVMATKIVANEFVAMLDFVKIQNDFSERTRAIVSVFLISFANFGSIGTIVGAVKGLN EKQGNVVAGFGLKLLYGAALVSFLSATIISIVF >gi|333607913|gb|AFDH01000030.1| GENE 33 30382 - 31095 781 237 aa, chain - ## HITS:1 COG:BS_deoD KEGG:ns NR:ns ## COG: BS_deoD COG0813 # Protein_GI_number: 16079021 # Func_class: F Nucleotide transport and metabolism # Function: Purine-nucleoside phosphorylase # Organism: Bacillus subtilis # 1 234 1 233 233 256 52.0 2e-68 MSIHLEAKPGEIAERVLLPGDPLRAKFVAEHFLDEVRCYNEVRGMYGYTGLYRGVPVSVQ GTGMGNPSMSIYVTELIRDYGAKKLIRIGTCGAMQPNLKIRDLVLAQAVSTDSNMTDKMF HGCSYAPTADFGMLMQAYQGAKRSGANVFAGNVYNSDEFYRHTLDRLHTFMEFGVLAVEM ESTALYTLAAKYGVKALSILTVGSQLLTNERSAHKDSEQSFNQMAEIALQTITQDAV >gi|333607913|gb|AFDH01000030.1| GENE 34 31225 - 32643 865 472 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_6243 NR:ns ## KEGG: GYMC10_6243 # Name: not_defined # Def: transcriptional antiterminator, BglG # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 4 472 11 482 483 452 49.0 1e-125 MKALIELLDSEERWFTFGEAERELGISDKSVRKLVEEITALVPGTMSIEVSRGKGIFFRR ERHGPTIREVLVEQFRQTSYYRLMHRLFIYGGQASAEELAEFLYMSASSFKKFIIQLNRE DLQPSCLRLAYSSPALKGNEIHIRYFYWKLFSDSHPYTGWPFAEVDYQQIQEWLTELEEE QGIVYFLNSKRSLIFLIAVTLERIRQGHSVSVSRELYDWKNGAFYESVRRLAGKLGQEYG LDIAGEEIYFLQSLCSLSQYHYRNEKEMALEQEEALHRNDEPKYQMMNNLLPLLRETFPS LGVGHRFVMEMCEFFEKLMIDNAIPELMAVSKSRLIAYLRQEEPLIYEGVTECINRWSRE YPAVSVSSYHLVKLGFIVSSNVRYKSKKAFLIIGEEFSVRHYVANRIKREIGDELTIETS ILHELSDETVREREIDFIISTMPVALKTVPAVIISAIPTKRDLENIRKELLE >gi|333607913|gb|AFDH01000030.1| GENE 35 32894 - 34627 218 577 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|225088774|ref|YP_002660041.1| ribosomal protein S16 [gamma proteobacterium NOR5-3] # 333 568 1 233 312 88 28 6e-17 MKSGGLISQVKELVYLMRFMSRRRKIQYYTGLGITAVNQTLFLVSFSLVVQNLVNFADYR DSALMYRAFYILAGALLLENVISPWFTYLYQRSVEFTIVDVRERLYRKFCRLRPKYLEQT HHGDLMSRVNNDVAAVELTFSSIYFMLLLQVVFSVGSIISMVLIDWRFASVSLLVLLVSF SISARFARQIRVLSEKSLQTLARMTEKFKDFIGGIQLVKLFHIRPVYSQYRSLNEEVTRL AERTARKNGLQAAVNHFVSYVTFCGIIVIGSLLYAYGLIGMGSVAALAVLQINLTHAIMN FGTVLSMAQNSLAGAHRIEEILSEEEEPERLGLPDPKRSSEAMVEFRDVEFSYQADKKVL CRMSMQVYPGQVAAIVGASGSGKSTLIKLLLGFYPVDSGEILLGGKLFGSYTLDEIRGQI AYVPQEPFLFSGTIEENIRYGNPQATADDVIEAAKAAYAHHFIEELPGGYQTQAGERGAS LSGGQRQRIAIARAILKNAPILLLDEATSALDNESEHWVQQALNELMKGRTTILIAHRLS TVEKADSITVMNQGTVVERGTHRDLLAKGGYYARLYG >gi|333607913|gb|AFDH01000030.1| GENE 36 34624 - 36408 240 594 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 346 571 132 355 398 97 32 2e-19 MASQKSKRVYAAWKAFRWLLTFINRHRGWMIAGTVSAIAAAIIEVWTGSLIEQLTSQAEN GAGPVVIEIVCTVFFVILIGVPAKYLMIYGVEKSSALAVRDIRNHVMNHIGKLPIHYVEK QHSGDILSRISSDLQLIHQFMSRDLAQWFYHPLLFVGCFTYLIWIQWELMIYSLLLFPVS LLVSHWIGKQLQQLTEEAQANMGRMNMNLQDTLGGMPVVKSYLLSGLLFRSYQSLLLLTA QKKLAVKKRESWVNPLLSTLMLSPIIFAVSYGSYLISKGELGTGELIAFLYLLNLCLEPL DHIPELITRTFEMSGALKRVSDILEQPAENQEGHAITKTASPPVEFRNVSFSYETGSPIL QNLSFTVPEGKTIALVGASGGGKSTVFKLLCGFYPLEDGQGNICVFGQQVNGSNPEQLRS HFSVVTQESYLFSGTVADNIAYGRQDASMDEVIAAAKSAQAHAFIMSLPEGYQTYVGERG GFLSGGQRQRIAIARALLKNAPILLLDEPTSALDPESEGAVQEALQVLMSERTTIVIAHR LSTVQNADEIWVLEQGRLVEAGTHAQLLEKKGLYAQSFLQEFTGLAESKEVVYT >gi|333607913|gb|AFDH01000030.1| GENE 37 36440 - 39688 2542 1082 aa, chain - ## HITS:1 COG:BS_srfAA_2 KEGG:ns NR:ns ## COG: BS_srfAA_2 COG1020 # Protein_GI_number: 16077417 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Non-ribosomal peptide synthetase modules and related proteins # Organism: Bacillus subtilis # 5 834 131 985 990 553 37.0 1e-157 MKSLFEKEEMYWKEKFNADDSLTFLPYNLSPKAAAGPISEGSPDVVSLRLPPALSERILR LANGSDLAVFMIVLAGVNCLLHTYAKRDNVLVGIPAETGPGDGPAIHDFLLMKTYINRQS TFKSLLGQVKLAIGEALENQHLPFRKMTGSLTIETTPEGTPILNTIVTYKNIHKADIQGI AASDTVFQFDSNENSIGINVSFNSGRYTCDFIEKAAGHLVQLLSVLLVQPDLELGDADML SPYEKQQLLVDFNNTETRYEREQTIHGLIEEQAARVPDATAVVFEQERLTYRELNERANR LARTLRAAGVQPDQLVGLMAGRSLEIAVGILAVLKAGGAYVPIDPEYPEERIRYLLEDSG AKLLLTQRRLLDRVPYAGTVLALDDESSYSADGTNLEPVNGPNHLAYVIYTSGTTGKPKG VMVEHHGLVSLKHMFGDTLGITETDRVVQFASLSFDASCWEVFKALFFGAALYIPTAETI LDNRSFERFMHENRITAAILPPTYAAYLNPDHMPGLQKLITGGSAVSAEFVQQWRDKVRY FNAYGPTEASIVTSVWTARTDDIGLKSVPIGRPIQNHRIYILDDRLQLVPAGVEGELCIA GAGLARGYLNRPELTAEKFVDNPFSPGERMYRTGDLARWLPDGNIEYRGRIDHQVKVRGY RIETGEIEEQLLKVPSVQEAIVIAREEADGQQLCAYFVAQSKLTASGLKEALAKELPGYM IPAHFVQLLRMPLTPNGKIDRKALPAPEESAEQSAEYIAPRTLMEVKIAQIWKDVLGLRR VGVKDNFFDLGGSSLSLMRLIQAVYDETGIEVPLNQQFKNLTVEAMAFGSGETGLEKGQS FIKLNKNGALNVFCFPPGSGFGIGYRELANLLDDRFVLYGTDFIEDSESYEAMLDDYVDE IVRIQEEAPYVLLGYCFGGNLMFEVAQRMEKRGYRVSDLIMVDSWIKETLTPAETTESEW QEILEDLSETEKEMMANPLIRERVSIKVRATLMYEAQLINRGTVEGRIHELIAEDSDAFR LEHSLPSWRGAVQGTYTEYKLAGAHEKLLEPECLEGTAKVILRILEEIAQRNGASSKVLH GS >gi|333607913|gb|AFDH01000030.1| GENE 38 39793 - 42060 2066 755 aa, chain - ## HITS:1 COG:all1695_1 KEGG:ns NR:ns ## COG: all1695_1 COG1020 # Protein_GI_number: 17229187 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Non-ribosomal peptide synthetase modules and related proteins # Organism: Nostoc sp. PCC 7120 # 2 738 315 1069 1224 531 38.0 1e-150 FRIINSYGVTEAAIDSSFYDEPLAKLPETGSVPIGKAWLNARFYIVDAHLNPVPVGVLGE LCIGGPGVARGYLNRPDLTEEKFVDSPFVAGERLYRTGDLARWTADGNVDFIGRIDHQAK IRGYRIETGEVESQLLQADGVREAVVIVREDGSGQKALCAYFTADGELAASSLRSALAQE LPGYMIPSYFIRLERIPLTPNGKVDRKALLAPEAGADGGAEYIAPRTPLETKLCAIWQDV LGLQKEIGIRDNFFDLGGHSLRATTLVGKVHKELNVDLPLRDVFRHSTVEEMAAAIARME RQEHVSIPLAEEQDHYPLSSAQKRLFIQHTLEGADELYNMPEMLQLEGPVDIGRIEEAFR TLIARHETLRTGFEMVHGEPVQRVHAQVEFAVETSKAAKEDAEQIVRRFVRAFDLKTPPL LRAGLIELGPELHILMFDMHHIVSDGVSMAILVDEFSRLYAGEELPPLRIQYKDYAAWQQ SETYKERTRQQESYWLGELAGDLPDVELPADYERPPVRSYEGAHLEFEVGADLTTELGVL AARSGSTLFMILLSAYNVLLSKYGGQEDVIVGTPVAGRTDADLEPVIGMFVNTLAIRNRP AGDKTFLSFLEEVKESALGAFEHQDYPFEELVERLNVKREAGRNPLFDTVFDMQNIEEHE ASLGTLRLKPYELDDLEEAKFDLTLFMSEDNGALSGGFFYGTKLFKEARIRTMIQDYLHI LSQICENPESRLSEIQCLKLSSGTKSSVEAIEFAF Prediction of potential genes in microbial genomes Time: Sun Jul 17 08:09:36 2011 Seq name: gi|333607711|gb|AFDH01000031.1| Paenibacillus sp. HGF7 contig00018, whole genome shotgun sequence Length of sequence - 249086 bp Number of predicted genes - 197, with homology - 173 Number of transcription units - 107, operones - 40 average op.length - 3.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 224 - 270 9.5 1 1 Tu 1 . - CDS 409 - 1815 1103 ## COG4585 Signal transduction histidine kinase - Prom 1934 - 1993 3.0 + Prom 1908 - 1967 4.0 2 2 Op 1 . + CDS 2002 - 4071 1401 ## COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 3 2 Op 2 . + CDS 4068 - 5615 1424 ## COG2199 FOG: GGDEF domain + Term 5650 - 5676 0.3 - Term 5449 - 5486 -0.9 4 3 Tu 1 . - CDS 5726 - 7720 1349 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains - Term 7752 - 7795 6.5 5 4 Tu 1 . - CDS 7822 - 7965 60 ## - Prom 7992 - 8051 4.1 6 5 Tu 1 . - CDS 8126 - 8404 294 ## BBR47_45320 hypothetical protein - Prom 8436 - 8495 3.2 - Term 8470 - 8502 2.2 7 6 Tu 1 . - CDS 8529 - 9257 450 ## COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog - Prom 9336 - 9395 5.0 + Prom 9445 - 9504 5.2 8 7 Tu 1 . + CDS 9583 - 10170 590 ## COG0740 Protease subunit of ATP-dependent Clp proteases + Term 10215 - 10261 4.3 - Term 10151 - 10192 -0.8 9 8 Tu 1 . - CDS 10270 - 11262 576 ## COG1078 HD superfamily phosphohydrolases - Prom 11296 - 11355 3.2 - Term 11355 - 11404 6.2 10 9 Op 1 1/0.200 - CDS 11438 - 12721 1103 ## COG0477 Permeases of the major facilitator superfamily 11 9 Op 2 7/0.050 - CDS 12736 - 20841 4873 ## COG1020 Non-ribosomal peptide synthetase modules and related proteins 12 9 Op 3 7/0.050 - CDS 20883 - 27452 4560 ## COG1020 Non-ribosomal peptide synthetase modules and related proteins 13 9 Op 4 7/0.050 - CDS 27547 - 35505 6420 ## COG1020 Non-ribosomal peptide synthetase modules and related proteins 14 9 Op 5 . - CDS 35529 - 48275 9452 ## COG1020 Non-ribosomal peptide synthetase modules and related proteins 15 9 Op 6 . - CDS 48297 - 49511 907 ## COG0331 (acyl-carrier-protein) S-malonyltransferase 16 9 Op 7 . - CDS 49526 - 50248 423 ## COG3208 Predicted thioesterase involved in non-ribosomal peptide biosynthesis 17 9 Op 8 . - CDS 50307 - 51608 1266 ## COG0160 4-aminobutyrate aminotransferase and related aminotransferases - Prom 51658 - 51717 6.8 + Prom 51936 - 51995 10.6 18 10 Op 1 . + CDS 52088 - 52960 331 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 19 10 Op 2 . + CDS 52977 - 54617 1059 ## MCP_1301 hypothetical protein + Prom 54629 - 54688 3.6 20 10 Op 3 . + CDS 54715 - 54954 406 ## + Term 54979 - 55029 10.1 - Term 54978 - 55004 -0.6 21 11 Tu 1 . - CDS 55019 - 56665 1462 ## COG1073 Hydrolases of the alpha/beta superfamily - Prom 56763 - 56822 3.6 - Term 56791 - 56836 7.2 22 12 Tu 1 . - CDS 56844 - 57821 784 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - Prom 57884 - 57943 8.1 - Term 57923 - 57959 4.0 23 13 Tu 1 . - CDS 57992 - 58744 207 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 - Prom 58840 - 58899 6.7 + Prom 58822 - 58881 6.0 24 14 Tu 1 . + CDS 58907 - 59803 812 ## COG0583 Transcriptional regulator + Term 59902 - 59937 6.0 - Term 59886 - 59929 10.3 25 15 Tu 1 . - CDS 59946 - 61187 1270 ## COG0477 Permeases of the major facilitator superfamily - Prom 61357 - 61416 8.1 - Term 61400 - 61448 10.4 26 16 Tu 1 . - CDS 61497 - 61739 249 ## - Prom 61770 - 61829 3.7 + Prom 61748 - 61807 8.4 27 17 Tu 1 . + CDS 61934 - 64246 2226 ## Pjdr2_3030 hypothetical protein - Term 64236 - 64270 1.3 28 18 Tu 1 . - CDS 64336 - 65217 625 ## COG1408 Predicted phosphohydrolases - Prom 65284 - 65343 1.8 29 19 Op 1 40/0.000 - CDS 65347 - 66786 1198 ## COG0642 Signal transduction histidine kinase 30 19 Op 2 2/0.100 - CDS 66779 - 67501 763 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 67544 - 67603 4.2 - Term 67565 - 67617 0.2 31 20 Op 1 40/0.000 - CDS 67633 - 68319 852 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 32 20 Op 2 . - CDS 68316 - 69794 1391 ## COG0642 Signal transduction histidine kinase 33 20 Op 3 . - CDS 69809 - 70555 700 ## TherJR_2635 membrane spanning protein 34 20 Op 4 . - CDS 70548 - 71285 328 ## PROTEIN SUPPORTED gi|90020817|ref|YP_526644.1| ribosomal protein S16 35 20 Op 5 . - CDS 71376 - 72341 876 ## TherJR_2637 hypothetical protein - Prom 72381 - 72440 5.9 - Term 72415 - 72447 2.3 36 21 Op 1 14/0.050 - CDS 72511 - 73527 1065 ## COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component 37 21 Op 2 35/0.000 - CDS 73524 - 74330 885 ## COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components 38 21 Op 3 . - CDS 74327 - 75508 1094 ## COG0609 ABC-type Fe3+-siderophore transport system, permease component 39 22 Tu 1 . - CDS 75912 - 77828 1697 ## COG1199 Rad3-related DNA helicases - Prom 77911 - 77970 4.9 - Term 78014 - 78054 5.6 40 23 Tu 1 . - CDS 78058 - 79473 1604 ## COG0469 Pyruvate kinase - Prom 79546 - 79605 4.6 41 24 Tu 1 . + CDS 79548 - 80369 735 ## COG2207 AraC-type DNA-binding domain-containing proteins + Term 80448 - 80489 -0.5 - Term 80307 - 80360 7.1 42 25 Tu 1 . - CDS 80515 - 80958 509 ## GYMC10_0526 hypothetical protein - Prom 81178 - 81237 3.4 - Term 81394 - 81426 3.1 43 26 Op 1 1/0.200 - CDS 81567 - 81923 364 ## COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases 44 26 Op 2 . - CDS 81941 - 83005 1027 ## COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold 45 26 Op 3 14/0.050 - CDS 83055 - 84617 1879 ## COG1653 ABC-type sugar transport system, periplasmic component 46 27 Op 1 7/0.050 - CDS 84834 - 85694 1162 ## COG0395 ABC-type sugar transport system, permease component 47 27 Op 2 . - CDS 85708 - 86628 1183 ## COG4209 ABC-type polysaccharide transport system, permease component - Prom 86669 - 86728 3.5 - Term 86775 - 86807 -0.9 48 28 Tu 1 . - CDS 86817 - 89102 2260 ## COG2207 AraC-type DNA-binding domain-containing proteins - Prom 89290 - 89349 8.2 - Term 89339 - 89375 7.5 49 29 Op 1 . - CDS 89425 - 89862 572 ## GYMC61_2954 GCN5-related N-acetyltransferase - Term 89916 - 89943 -0.1 50 29 Op 2 . - CDS 89954 - 90487 578 ## COG0529 Adenylylsulfate kinase and related kinases 51 29 Op 3 . - CDS 90471 - 91388 814 ## PPE_02624 hypothetical protein 52 29 Op 4 . - CDS 91385 - 92779 1148 ## COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases 53 29 Op 5 . - CDS 92806 - 93588 824 ## PPE_02626 hypothetical protein 54 29 Op 6 . - CDS 93633 - 94934 1158 ## PPE_02627 hypothetical protein 55 29 Op 7 . - CDS 94952 - 95812 1056 ## PPE_02628 hypothetical protein 56 29 Op 8 . - CDS 95861 - 96361 70 ## - Prom 96562 - 96621 8.3 - Term 96612 - 96658 9.8 57 30 Op 1 . - CDS 96680 - 97930 1199 ## COG0477 Permeases of the major facilitator superfamily 58 30 Op 2 . - CDS 97946 - 98764 293 ## COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I 59 30 Op 3 . - CDS 98803 - 99327 244 ## PROTEIN SUPPORTED gi|163764775|ref|ZP_02171829.1| ribosomal protein L16 - Prom 99421 - 99480 5.0 + Prom 99418 - 99477 6.2 60 31 Tu 1 . + CDS 99645 - 101816 958 ## COG1609 Transcriptional regulators + Term 101847 - 101904 3.2 61 32 Op 1 . - CDS 102064 - 102252 70 ## 62 32 Op 2 14/0.050 - CDS 102282 - 103913 1958 ## COG1653 ABC-type sugar transport system, periplasmic component - Prom 103934 - 103993 2.2 63 33 Op 1 7/0.050 - CDS 104002 - 104889 1217 ## COG0395 ABC-type sugar transport system, permease component 64 33 Op 2 . - CDS 104906 - 105889 997 ## COG4209 ABC-type polysaccharide transport system, permease component - Prom 105999 - 106058 7.0 + Prom 106000 - 106059 4.4 65 34 Tu 1 . + CDS 106086 - 108641 2348 ## COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain + Prom 108697 - 108756 4.3 66 35 Tu 1 . + CDS 108976 - 109518 386 ## COG3797 Uncharacterized protein conserved in bacteria + Term 109620 - 109659 7.3 - Term 109608 - 109647 7.1 67 36 Op 1 . - CDS 109770 - 110096 388 ## COG2329 Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides 68 36 Op 2 . - CDS 110158 - 110556 300 ## Pjdr2_2067 GCN5-related N-acetyltransferase + Prom 110579 - 110638 3.0 69 37 Op 1 . + CDS 110757 - 111851 804 ## Pjdr2_6077 spore germination protein 70 37 Op 2 . + CDS 111851 - 113335 1063 ## Pjdr2_6076 GerA spore germination protein 71 37 Op 3 . + CDS 113332 - 114468 1005 ## Pjdr2_6075 germination protein, Ger(X)C family 72 38 Tu 1 . - CDS 114481 - 114849 346 ## Haur_2943 hypothetical protein - Prom 114869 - 114928 2.0 73 39 Op 1 . - CDS 115023 - 115811 785 ## COG3231 Aminoglycoside phosphotransferase 74 39 Op 2 . - CDS 115792 - 115956 112 ## + Prom 116069 - 116128 6.0 75 40 Tu 1 . + CDS 116180 - 116389 122 ## + Term 116558 - 116594 7.2 - Term 116540 - 116588 16.4 76 41 Op 1 . - CDS 116637 - 121514 4942 ## GYMC10_1663 S-layer domain protein - Term 121562 - 121601 5.1 77 41 Op 2 14/0.050 - CDS 121626 - 123119 2001 ## COG1653 ABC-type sugar transport system, periplasmic component 78 41 Op 3 7/0.050 - CDS 123217 - 124140 1202 ## COG0395 ABC-type sugar transport system, permease component 79 41 Op 4 2/0.100 - CDS 124157 - 125113 1034 ## COG4209 ABC-type polysaccharide transport system, permease component - Prom 125315 - 125374 4.3 - Term 125263 - 125295 -0.3 80 42 Op 1 7/0.050 - CDS 125418 - 127016 1990 ## COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain 81 42 Op 2 1/0.200 - CDS 127013 - 128833 1732 ## COG2972 Predicted signal transduction protein with a C-terminal ATPase domain 82 42 Op 3 . - CDS 128851 - 130347 1440 ## COG1653 ABC-type sugar transport system, periplasmic component 83 42 Op 4 . - CDS 130425 - 131534 973 ## GYMC10_6264 hypothetical protein - Prom 131567 - 131626 4.0 - Term 131784 - 131824 6.3 84 43 Tu 1 . - CDS 131839 - 132384 221 ## PROTEIN SUPPORTED gi|228000081|ref|ZP_04047083.1| acetyltransferase, ribosomal protein N-acetylase - Prom 132427 - 132486 4.5 85 44 Op 1 . - CDS 132560 - 133204 654 ## BCAH187_A1535 hypothetical protein 86 44 Op 2 . - CDS 133228 - 133677 601 ## COG0716 Flavodoxins - Prom 133750 - 133809 6.2 - Term 133808 - 133848 7.3 87 45 Op 1 . - CDS 133962 - 134672 705 ## COG0500 SAM-dependent methyltransferases 88 45 Op 2 . - CDS 134800 - 136314 1250 ## COG1680 Beta-lactamase class C and other penicillin binding proteins - Prom 136532 - 136591 6.8 + Prom 136491 - 136550 8.7 89 46 Tu 1 . + CDS 136688 - 139114 2420 ## COG3973 Superfamily I DNA and RNA helicases + Term 139198 - 139241 10.1 + Prom 139179 - 139238 4.0 90 47 Tu 1 . + CDS 139258 - 139554 325 ## BBR47_12090 hypothetical protein + Term 139581 - 139619 3.0 91 48 Op 1 23/0.000 - CDS 139611 - 140300 641 ## COG4149 ABC-type molybdate transport system, permease component 92 48 Op 2 1/0.200 - CDS 140304 - 141134 798 ## COG0725 ABC-type molybdate transport system, periplasmic component 93 49 Op 1 . - CDS 141305 - 141760 403 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 94 49 Op 2 . - CDS 141799 - 144366 2024 ## COG1643 HrpA-like helicases - Term 144670 - 144702 2.3 95 50 Op 1 . - CDS 144740 - 144949 212 ## 96 50 Op 2 1/0.200 - CDS 144988 - 150540 5131 ## COG2931 RTX toxins and related Ca2+-binding proteins - Prom 150617 - 150676 2.3 - Term 150616 - 150670 16.0 97 51 Tu 1 . - CDS 150763 - 152046 1454 ## COG0477 Permeases of the major facilitator superfamily - Prom 152090 - 152149 3.3 + Prom 152119 - 152178 2.2 98 52 Op 1 . + CDS 152223 - 153041 734 ## Pjdr2_3117 hypothetical protein 99 52 Op 2 . + CDS 153087 - 154061 839 ## COG0008 Glutamyl- and glutaminyl-tRNA synthetases + Prom 154073 - 154132 1.7 100 52 Op 3 . + CDS 154217 - 155557 1239 ## COG0477 Permeases of the major facilitator superfamily + Term 155562 - 155605 14.0 - Term 155512 - 155564 -0.8 101 53 Tu 1 . - CDS 155657 - 156331 576 ## COG2135 Uncharacterized conserved protein - Prom 156373 - 156432 5.7 + Prom 156410 - 156469 5.6 102 54 Tu 1 . + CDS 156648 - 158525 1767 ## COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily + Term 158577 - 158620 11.2 + Prom 158655 - 158714 5.7 103 55 Op 1 7/0.050 + CDS 158769 - 159209 231 ## COG1846 Transcriptional regulators 104 55 Op 2 19/0.000 + CDS 159216 - 159866 851 ## COG1566 Multidrug resistance efflux pump 105 55 Op 3 4/0.100 + CDS 159881 - 161530 1757 ## COG0477 Permeases of the major facilitator superfamily 106 55 Op 4 . + CDS 161576 - 162112 496 ## COG0655 Multimeric flavodoxin WrbA 107 55 Op 5 . + CDS 162138 - 163304 567 ## + Term 163326 - 163380 18.0 - Term 163312 - 163368 18.1 108 56 Op 1 . - CDS 163403 - 164215 1035 ## COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase - Prom 164295 - 164354 2.2 - Term 164370 - 164412 6.7 109 56 Op 2 . - CDS 164439 - 164966 592 ## Pjdr2_2677 hypothetical protein - Prom 165008 - 165067 3.8 110 57 Tu 1 . - CDS 165098 - 166087 1062 ## COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) - Term 166439 - 166472 5.4 111 58 Tu 1 . - CDS 166480 - 167145 656 ## BCG9842_B2345 hypothetical protein + Prom 167345 - 167404 2.9 112 59 Tu 1 . + CDS 167452 - 167814 393 ## COG0346 Lactoylglutathione lyase and related lyases + Term 167849 - 167900 16.3 - Term 167845 - 167878 3.2 113 60 Tu 1 . - CDS 167892 - 169124 1087 ## GYMC10_2456 hypothetical protein - Prom 169262 - 169321 3.8 + Prom 169191 - 169250 3.9 114 61 Op 1 . + CDS 169484 - 170353 937 ## COG0053 Predicted Co/Zn/Cd cation transporters 115 61 Op 2 . + CDS 170437 - 171087 523 ## BcerKBAB4_4961 integral membrane protein + Term 171148 - 171191 5.0 - Term 171142 - 171172 0.2 116 62 Tu 1 . - CDS 171263 - 171754 518 ## BSU31140 cysteine dioxygenase (EC:1.13.11.20) - Term 172015 - 172049 0.8 117 63 Op 1 2/0.100 - CDS 172201 - 173031 794 ## COG0561 Predicted hydrolases of the HAD superfamily 118 63 Op 2 . - CDS 173024 - 173800 807 ## COG1349 Transcriptional regulators of sugar metabolism - Prom 173845 - 173904 7.7 - Term 173910 - 173951 6.2 119 64 Op 1 . - CDS 173995 - 174948 1008 ## COG0039 Malate/lactate dehydrogenases 120 64 Op 2 . - CDS 175021 - 175881 343 ## Pjdr2_6168 hypothetical protein - Prom 176095 - 176154 4.0 121 65 Op 1 . - CDS 176287 - 176826 693 ## COG2259 Predicted membrane protein 122 65 Op 2 . - CDS 176886 - 177092 177 ## - Prom 177114 - 177173 3.9 123 66 Tu 1 . - CDS 177180 - 177644 -82 ## + Prom 177412 - 177471 4.7 124 67 Tu 1 . + CDS 177662 - 178732 1109 ## COG3594 Fucose 4-O-acetylase and related acetyltransferases + Term 178808 - 178836 -0.7 - Term 178960 - 178999 11.8 125 68 Op 1 . - CDS 179233 - 181584 1797 ## Pjdr2_4980 S-layer domain protein 126 68 Op 2 . - CDS 181653 - 182372 653 ## CPE0541 TrkA domain protein 127 69 Tu 1 . - CDS 182477 - 182617 107 ## + Prom 182490 - 182549 3.0 128 70 Tu 1 . + CDS 182583 - 183638 1191 ## COG4129 Predicted membrane protein + Term 183703 - 183730 -0.8 + Prom 183641 - 183700 4.3 129 71 Tu 1 . + CDS 183741 - 183953 279 ## 130 72 Tu 1 . - CDS 184130 - 184519 394 ## BBR47_42750 hypothetical protein - Prom 184552 - 184611 2.9 131 73 Tu 1 . - CDS 184631 - 184876 316 ## - Prom 185097 - 185156 4.7 - Term 184960 - 184997 4.4 132 74 Op 1 . - CDS 185237 - 185518 222 ## COG3326 Predicted membrane protein - Prom 185544 - 185603 7.7 - Term 185570 - 185600 1.0 133 74 Op 2 . - CDS 185606 - 186358 279 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 - Prom 186418 - 186477 4.9 + Prom 186381 - 186440 5.2 134 75 Tu 1 . + CDS 186467 - 188341 1296 ## COG4533 ABC-type uncharacterized transport system, periplasmic component + Term 188347 - 188376 -0.9 - Term 188335 - 188363 -0.3 135 76 Tu 1 . - CDS 188403 - 189107 615 ## COG2949 Uncharacterized membrane protein - Prom 189318 - 189377 4.3 + Prom 189309 - 189368 5.7 136 77 Tu 1 . + CDS 189403 - 190545 967 ## Pjdr2_3651 GCN5-related N-acetyltransferase + Term 190688 - 190740 11.0 - Term 190674 - 190727 15.0 137 78 Tu 1 . - CDS 190776 - 192188 1382 ## COG1027 Aspartate ammonia-lyase + Prom 192466 - 192525 5.0 138 79 Tu 1 . + CDS 192670 - 194136 1550 ## COG1012 NAD-dependent aldehyde dehydrogenases - Term 194166 - 194221 6.1 139 80 Tu 1 . - CDS 194261 - 194752 446 ## - Prom 194778 - 194837 6.8 - Term 194833 - 194864 3.2 140 81 Op 1 . - CDS 194874 - 195827 710 ## COG2267 Lysophospholipase 141 81 Op 2 . - CDS 195866 - 197173 1322 ## COG2252 Permeases - Prom 197201 - 197260 4.3 - Term 197324 - 197363 8.4 142 82 Op 1 . - CDS 197396 - 197617 322 ## Pjdr2_4820 hypothetical protein 143 82 Op 2 . - CDS 197643 - 198476 888 ## COG1073 Hydrolases of the alpha/beta superfamily 144 82 Op 3 17/0.000 - CDS 198519 - 199574 1153 ## COG1118 ABC-type sulfate/molybdate transport systems, ATPase component 145 82 Op 4 17/0.000 - CDS 199578 - 200489 1201 ## COG4208 ABC-type sulfate transport system, permease component 146 82 Op 5 9/0.050 - CDS 200512 - 201345 923 ## COG0555 ABC-type sulfate transport system, permease component 147 82 Op 6 . - CDS 201415 - 202509 1345 ## COG1613 ABC-type sulfate transport system, periplasmic component - Prom 202642 - 202701 8.2 + Prom 202644 - 202703 4.1 148 83 Tu 1 . + CDS 202840 - 203037 229 ## + Term 203073 - 203114 11.3 - Term 203061 - 203102 11.3 149 84 Op 1 . - CDS 203244 - 204026 1056 ## COG2013 Uncharacterized conserved protein 150 84 Op 2 . - CDS 204153 - 204632 421 ## COG1607 Acyl-CoA hydrolase + Prom 204513 - 204572 4.5 151 85 Tu 1 . + CDS 204598 - 204750 61 ## + Term 204755 - 204793 0.6 152 86 Tu 1 . - CDS 204731 - 205912 1348 ## COG0027 Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) - Prom 205944 - 206003 2.1 153 87 Op 1 4/0.100 - CDS 206049 - 208025 1488 ## COG4548 Nitric oxide reductase activation protein 154 87 Op 2 . - CDS 208028 - 208939 803 ## COG0714 MoxR-like ATPases 155 87 Op 3 . - CDS 209004 - 209213 88 ## 156 87 Op 4 . - CDS 209244 - 209447 291 ## 157 87 Op 5 . - CDS 209444 - 209602 214 ## - Prom 209806 - 209865 4.0 + Prom 209762 - 209821 6.3 158 88 Tu 1 . + CDS 209930 - 210604 855 ## Pjdr2_4965 hypothetical protein + Term 210627 - 210664 9.1 - Term 210706 - 210748 5.2 159 89 Op 1 . - CDS 210754 - 211224 552 ## BBR47_21990 hypothetical protein 160 89 Op 2 . - CDS 211214 - 211894 759 ## COG2860 Predicted membrane protein 161 89 Op 3 . - CDS 211915 - 212997 1139 ## COG0673 Predicted dehydrogenases and related proteins - Prom 213034 - 213093 4.8 + Prom 213125 - 213184 6.0 162 90 Tu 1 . + CDS 213266 - 214792 1317 ## PPE_01022 N-acyl-D-glucosamine 2-epimerase-like protein + Term 214886 - 214942 20.0 - Term 214873 - 214929 20.0 163 91 Op 1 . - CDS 214999 - 215397 333 ## BCQ_4731 kinase-associated lopoprotein b; sporulation initiation KinB-activator 164 91 Op 2 . - CDS 215417 - 215779 205 ## COG0526 Thiol-disulfide isomerase and thioredoxins - Term 215789 - 215825 -0.8 165 92 Tu 1 . - CDS 215895 - 216428 484 ## Bcell_2246 hypothetical protein - Term 216517 - 216557 8.7 166 93 Tu 1 3/0.100 - CDS 216593 - 218209 1928 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains - Term 218274 - 218309 0.8 167 94 Tu 1 . - CDS 218315 - 220264 2076 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains - Term 220288 - 220349 7.8 168 95 Tu 1 . - CDS 220372 - 221460 1205 ## COG1363 Cellulase M and related proteins + Prom 222051 - 222110 1.6 169 96 Tu 1 . + CDS 222133 - 222951 554 ## COG2340 Uncharacterized protein with SCP/PR1 domains + Term 223032 - 223083 11.9 - Term 223395 - 223433 6.0 170 97 Op 1 . - CDS 223466 - 223756 418 ## PPSC2_c1864 stress responsive alpha-beta barrel domain-containing protein 171 97 Op 2 . - CDS 223830 - 225887 679 ## COG1716 FOG: FHA domain 172 97 Op 3 . - CDS 225922 - 226437 434 ## GYMC10_5229 peptidase A24A prepilin type IV 173 97 Op 4 . - CDS 226452 - 227090 488 ## PPE_01263 hypothetical protein 174 97 Op 5 . - CDS 227127 - 229391 1021 ## GYMC10_5231 hypothetical protein 175 97 Op 6 . - CDS 229430 - 230392 632 ## PPSC2_c1354 TadE family protein 176 97 Op 7 . - CDS 230436 - 230645 293 ## gi|167463708|ref|ZP_02328797.1| hypothetical protein Plarl_14324 177 97 Op 8 . - CDS 230685 - 231554 781 ## GYMC10_5234 type II secretion system F domain protein 178 97 Op 9 8/0.050 - CDS 231559 - 232488 434 ## COG4965 Flp pilus assembly protein TadB 179 97 Op 10 . - CDS 232488 - 233744 951 ## COG4962 Flp pilus assembly protein, ATPase CpaF 180 97 Op 11 . - CDS 233741 - 234850 637 ## COG1192 ATPases involved in chromosome partitioning 181 97 Op 12 . - CDS 234881 - 234976 56 ## - Prom 235089 - 235148 8.2 + Prom 235056 - 235115 3.7 182 98 Tu 1 . + CDS 235213 - 235683 355 ## COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) + Term 235791 - 235824 1.1 183 99 Op 1 . - CDS 235695 - 236741 961 ## COG2933 Predicted SAM-dependent methyltransferase 184 99 Op 2 . - CDS 236745 - 237509 233 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 185 99 Op 3 . - CDS 237551 - 237883 215 ## Pjdr2_2635 hypothetical protein 186 99 Op 4 . - CDS 237883 - 238755 757 ## COG0648 Endonuclease IV 187 99 Op 5 . - CDS 238780 - 239589 662 ## COG0266 Formamidopyrimidine-DNA glycosylase 188 100 Tu 1 . - CDS 240341 - 240793 31 ## COG0346 Lactoylglutathione lyase and related lyases - Prom 240958 - 241017 9.4 - Term 240854 - 240912 -0.4 189 101 Tu 1 . - CDS 241087 - 242790 1146 ## COG3359 Predicted exonuclease 190 102 Op 1 . - CDS 243045 - 243518 397 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 191 102 Op 2 . - CDS 243571 - 245817 1838 ## COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster 192 102 Op 3 . - CDS 245862 - 246005 187 ## - Prom 246194 - 246253 1.5 + Prom 246298 - 246357 3.5 193 103 Tu 1 . + CDS 246379 - 246702 79 ## BPUM_2690 phytoene dehydrogenase (EC:1.14.99.-) + Term 246784 - 246828 -0.0 194 104 Tu 1 . - CDS 246641 - 246856 351 ## - Prom 246887 - 246946 1.9 + Prom 246830 - 246889 4.8 195 105 Tu 1 . + CDS 246977 - 247615 523 ## COG0778 Nitroreductase + Term 247640 - 247697 13.0 - Term 247498 - 247526 -1.0 196 106 Tu 1 . - CDS 247659 - 248633 706 ## COG1988 Predicted membrane-bound metal-dependent hydrolases - Prom 248798 - 248857 2.9 197 107 Tu 1 . + CDS 248795 - 249022 285 ## Predicted protein(s) >gi|333607711|gb|AFDH01000031.1| GENE 1 409 - 1815 1103 468 aa, chain - ## HITS:1 COG:BS_comP KEGG:ns NR:ns ## COG: BS_comP COG4585 # Protein_GI_number: 16080220 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Bacillus subtilis # 78 452 392 769 769 170 30.0 5e-42 MRMKRTGRLAGAGFTAVVGIVFFLHYYFVVGDTWEMQAAGAVFCIVIAYFLGGFYDRARY YAAELNMINQELHISREQLRRSDERYSALQASLDRFSHDLFGIMKIAELEARLLAEVKLI FQIDRVFLIETQAGHPSCSVKVGMGEVPRAVLDKIRQHQSQQLSIGEVFEYEEGSFLKIG EIKGRTFWLIFGELTDSTRLPVKRIWLKTLIRYVNVVYENLTVIEDLSAELKRTMEEQEP PTWLLRLFFSLSEHERKRLSQDLHDAALQEQIIWYRKLEQLRTSGLGPDELKEGLAQIGD GLLDVMYQIRLTCNELRPPFLKEWGLVQALEALFDHIQLHANFTIYFEAEHFRDCLNDEQ RIAVYRITQELMSNAMKHSKAEEVHVTLTGGKQNLLLSYRDNGVGTVNGERKEPGFGSMG IYGMQQRVRSLQGEIQCVSDKSGLKVQICIPLKPVLHVIPLHGTFVSV >gi|333607711|gb|AFDH01000031.1| GENE 2 2002 - 4071 1401 689 aa, chain + ## HITS:1 COG:RSc1545 KEGG:ns NR:ns ## COG: RSc1545 COG5001 # Protein_GI_number: 17546264 # Func_class: T Signal transduction mechanisms # Function: Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain # Organism: Ralstonia solanacearum # 252 680 329 753 776 266 34.0 8e-71 MEIPIEKGQKELPFYRTLITALIEHAPIGIYMMENGALTYANDSYAKLVGYAAEEIRREK FGFLELVHPDDRLLTAPLFSESDDRRKGAPVRIRTRHKDGHWIYTEIHPSTALLNEKKVQ YGTVIDITEQVLAQRQLLAYHEEIKALFIHSPDAIFSLDEHGRFTSTNPRCESLTGYTKD ELIHKPFFTLIDPDDLQSALDRFGDAKRFISGSTNLRIIRKDGEKISVIVTHFPVKMDGF LSGTYGIARDTTDQAAAARKMEEFAYADPVTGLPNRKLFEDRLEQTIRFSKDGRLPFAVL SINLNRFKLINDSYGHQLGDDLLVLVTARIQGHLRLTDTLSRFAADQFTLILPETVQEEV MRLIRSIQGGMREPFVLHGHSVALTVSIGIAFNRGKGESAQDLIRYANMAMDHSKKLRTD AYTVYTEEMDLQISYKLQIQRDLETASAKHELELFYQPIMALKTGKLTAMEALIRWNHPR LGYIPPSDFIPVAEECGLILSVGIWVLQTACRQAKKWQASGAAPFKVAVNVSTKQLQQPF FAEHVLSIMKEVELEPAWLELEITESVLLDDVHAIKECLLKLKEAGICISIDDFGTGYTS LNYLREYPFDKVKIDRAFIEDINRDLNGKRIASAIISLAHSLHMDVVAEGIENELQYQYL LGENCNEGQGYYFSRPLPADSLTGLLNRP >gi|333607711|gb|AFDH01000031.1| GENE 3 4068 - 5615 1424 515 aa, chain + ## HITS:1 COG:RSc1893 KEGG:ns NR:ns ## COG: RSc1893 COG2199 # Protein_GI_number: 17546612 # Func_class: T Signal transduction mechanisms # Function: FOG: GGDEF domain # Organism: Ralstonia solanacearum # 27 514 18 510 533 281 33.0 2e-75 MKTKRLRKGLTLRLILSLLVLATAFLTAAVSGYAAYEANLKSLSTSYLENNSNYAEKLSA NTGNLLNLMQTSMNSIAQLAGKQPFTEKDLEMWFTFNRQYFNSVFVADDERDIEVVLPAD AGAVVGTRLLSEASKRAVEFKKPFISEPYVGTTGRLIVLISSPIFNGDGSYAGFVGGTIY LEEENALSKLLKEHFYGNGSYVYVVDKESRLIFHPNKERIYQIISSNEVIQKALAGKKGS QKIVNSEGNEFFAGYAFEPISGWGIVSQTPTRVLEEPLEQMISNLLMQALPLLGVVLTVA WWLASWITRPLYTLARYSEESAVHANLTVPASPSIHSGLYEVRQLYQSINSNLNRLKAES LTDGLTGLANRKAFDLLIAEWAERKVPFTLILMDVDHFKKVNDLHGHLIGDEVLKYLAST LHAFSREEDLCFRYGGEEFGILLKGCDLGRATRIAERLREKVEKSKSPIAQPLTVSIGVS FSYSRDTDVKTIIEMADNALYQSKTDGRNRITIYS >gi|333607711|gb|AFDH01000031.1| GENE 4 5726 - 7720 1349 664 aa, chain - ## HITS:1 COG:BH2025 KEGG:ns NR:ns ## COG: BH2025 COG0488 # Protein_GI_number: 15614588 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Bacillus halodurans # 1 542 1 538 539 454 46.0 1e-127 MILVNGQQIKKYHAANLVLDGVTFEVHAGEKIGLIGRNGSGKSTLLQLISRHLSIDEGML TLKKELTIGYLPQIPVEFEGLTVYEVLAYGCRHLTACQQEMTALEHNMAEPGASADSVRM QGLLNAYASVQERFERGGGYEMDAAIDSVAIGLQISKETYARQFSTFSGGEKTRIALASQ LIMRPDLLLLDEPTNHLDLRGIEWLEQFLQGYAGACVLVSHDRYFLDRTASKMIELEDGE AFTYQTNYSGYMKEKEERLLQQFAQYQEQQKVIKKMKETIRKLEEWGRVGDNEKFFKRAA SMRKALERMQVMKRPVLEQKSADFALNLQDRSAKRVAEFSGVHKSYGERRILKGAEGSLH YGEKIVLVGDNGTGKTTLFKLLLGQEVPDCGELDLGSRVEIGYMAQQEETRDPQKTVLDY FRLEAGVEEGEARGILAKYLFYGTDVFKPVSMLSGGERSRLRLALLVRRKPNLLLLDEPT NHLDIASREALEEALEDYPGTVLAISHDRYFINRLAQRVWELQDGQITSYIGQFDEYRAK KRELEQTAVGRGHGRPPAGSTGASAAAVRAGKQPPAGAPRAASPAVRAGEQPLFAAAEAR ATERKRLQLEAQIAALEAQLAASDAELQQLGGCGDTALLEARWREREELQTRLDAEMTAW LELG >gi|333607711|gb|AFDH01000031.1| GENE 5 7822 - 7965 60 47 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNLEKVNDRISQLPIAMAGIVHAFPVNGRSLSIFTNTVHPIARRRLP >gi|333607711|gb|AFDH01000031.1| GENE 6 8126 - 8404 294 92 aa, chain - ## HITS:1 COG:no KEGG:BBR47_45320 NR:ns ## KEGG: BBR47_45320 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 1 92 1 92 92 81 56.0 1e-14 MAEQINEQELIAYIAGKTKADPQKIKSVLKYEQDFINKAHKNAKGEVDIDSDDIADYVLS RPDIKLDELTVDNILDAEMDFLMEKGIASYLD >gi|333607711|gb|AFDH01000031.1| GENE 7 8529 - 9257 450 242 aa, chain - ## HITS:1 COG:BH3117 KEGG:ns NR:ns ## COG: BH3117 COG1595 # Protein_GI_number: 15615679 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog # Organism: Bacillus halodurans # 14 201 3 190 230 187 55.0 1e-47 MSTADFLLKGKEKDSTRINQFQQTLKRYCLSMTKSSWDAEDLAQETWLRAISTQGKGHAN VEAMLLRIAKNTWIDQSRRKQVLARIMKSEQTQAVTRRDEGLLVIEEAFRALFKHLPPLQ RTVFLLRDVLGFSSLETAVRLGTTEGAVKAALYRARHSLEAVRRDMETGTQAEPAEDGMK AYLRMMAAAYEMGDIALLVELAQRDEVEPAVALGLAQNHILRSGRCRTGAVPHLPSSLRM SA >gi|333607711|gb|AFDH01000031.1| GENE 8 9583 - 10170 590 195 aa, chain + ## HITS:1 COG:BH3118 KEGG:ns NR:ns ## COG: BH3118 COG0740 # Protein_GI_number: 15615680 # Func_class: O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Protease subunit of ATP-dependent Clp proteases # Organism: Bacillus halodurans # 1 194 1 194 194 317 80.0 1e-86 MSNYVPYVVEQTSRGERSYDIYSRLLKDRIVFLGAAIDDQVANSIIAQLLFLEAEDPQKE ISLYINSPGGSTSAGFAIYDAMQLVKPPVHTICTGFAASFAAILLLAGEKGKRFALPNSE IMIHQPHGGVQGQASDIAISAKRILGIRERLNRITSERTGQPVDKVDRDMDRDYFMSAEE AREYGIIDQVVTTIS >gi|333607711|gb|AFDH01000031.1| GENE 9 10270 - 11262 576 330 aa, chain - ## HITS:1 COG:BS_ydhJ KEGG:ns NR:ns ## COG: BS_ydhJ COG1078 # Protein_GI_number: 16077645 # Func_class: R General function prediction only # Function: HD superfamily phosphohydrolases # Organism: Bacillus subtilis # 1 323 1 323 325 367 56.0 1e-101 MRISDPIYGEFVVDGLLEELVLSQPVQRLKGVYQGGASYLVNDKWDVTRYEHSVGVMLLI RRLGGSLEEQVAGLLHDVSHTAFSHVIDYVLDCKEEDYHENIYEQFIEESEIPQLLKKYG YTYRNLLLEDSQWTLLEQPAPALCADRVDYTLRDQFHDGKITTEEIVFFLENLTVADGKM VLTRMESAEWFVKTYYLEVIDFFMHPLNAYSCHFLAEALKTALAKKVITLSSLLLTDEEV LSLMHASDEPDIQRLLKHLHRNVRVKEDVNDYDLNRTNKMRLIDPDVIRGNKLWQASELS ENVKKWGEEARRKSESGIYVKILSAEMPFR >gi|333607711|gb|AFDH01000031.1| GENE 10 11438 - 12721 1103 427 aa, chain - ## HITS:1 COG:BH0293 KEGG:ns NR:ns ## COG: BH0293 COG0477 # Protein_GI_number: 15612856 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus halodurans # 2 401 19 418 418 95 22.0 2e-19 MSLFKNSLFVRFYLSRTSANIADSIYSIVLLYFVQKSTASVSFTSFTFTAISAASIFSFL LGPLVDRYSPSLLASISLFVQAVLILAVPFLITDGGANLLAILVLVFIASCFSMLFYPAN NKMLPQLIQSPDRIVKANAMISSTDQLINVAGYLVGASIIILLGMKNTFYLASGMLFLSG LIYVQLKKQMEPEKAAGGAPKGPLKIKEYTSELVEGYRFVASSPFLRIMLPFFALTNFSM SILIITVPSMSVSYGSPIYYSLLYIAFFVGIFVGSALINVLKKNGMMIAVSWLLMGASLY LFAIVPALWMKLSAILLMGVFTGIINVLQTSLIQIITPSQLMGRVMAFLHTLSNAALPLG AFIGGILALRFELDSVLFISALVIVACGVLLLALKAVRTFQIPSETADKEKTEDNLAGKG TVAKEFL >gi|333607711|gb|AFDH01000031.1| GENE 11 12736 - 20841 4873 2701 aa, chain - ## HITS:1 COG:BS_ppsC_2 KEGG:ns NR:ns ## COG: BS_ppsC_2 COG1020 # Protein_GI_number: 16078893 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Non-ribosomal peptide synthetase modules and related proteins # Organism: Bacillus subtilis # 1090 2143 2 1034 1505 935 46.0 0 MDLSKRIASLSPEKRKLLEARLAQEGLSASRPAGSGAGTSAGPSPLEKMDAYPVSAGQKR LLLIQEIGDTAAAYNMPFVLLARGPVNVGKIQGAFEALISRHETLRTSFRKKDGEYEQII HEPGEILFKLDYSEETVSGVEEERSVIERCVSSFVRPFDVRRAPLFRAALIRLAPERHLL MTDMHHVVSDGLSLQILAEEFNRIYRGEILPELPVHYKEYAYWQQERIRDGVFLKQEKYW LDVFEGEVPVLNMPADYPRPQLQSFEGGRYEFETDRGLADKLRRLASETGSTLYMVLLAT YYVLLHKYTDQEDIVIGTPVGGRTHTQLQPLIGMFVNTLAIRQAPAGSKTFLSFLNEIKE GTLGAFDHEEYPLESLLEKLGLRRDVSRNPLFDTVFSLQTKGSQSMEMDGLLLEPYEAQS GVSKFDLSLLAEEDEELTFTFEYATKLYAEQTVERLAGHYIQILREISANRSLMLSQIGM LSADERRLLLEELNETAAPYARTSTIHGLFEEQVEKHPDRIAISFEDRRYTYNELNARSN RLAAAMQDLGVGPDTIVAIMPERSPEMVIGILAILKAGGAYLPVDPEYPQERISYMLEDS GTRILLTHRHLAGNTEFTGHTVFMEDEQWYTGIETNPHVSVTSDHLAYVIYTSGTTGKPK GVMIEHRGMANMKLFYENTLGLGPEDRIVQFASFSFDASVWEMYMALFMGGGLYLAPKEK LVQLDSFEAFVRDNGITLAMLPPTFAVYLDPGRLPSLRILITGGSESSPELVRRWSPHVD YFNAYGPTEATICATVWEAKRGTAVQNHRMIPIGKPLYNTQVYLVNADLQLVPRGTAGEL CIGGEALSRGYLHREALTGEKFVPNPFEPGRKMYRTGDLARWLPDGNLEYLGRIDHQVKI RGYRIELGEIETRLLQHGRVRETIVLVHEISSEKTLCAYYTSEEEAPAASELREHMASGL PSYMVPAHFIPLKEFPLTPNGKIDRKALQAPDPSSGSSDEYTAPETETEVRLASLWQEVL GAERVSLHDNFFERGGHSLKAALLLARISKEFGVELPLRKVFEAQTLQAQATAITAKGIT EAAYAPIPKAPEKPWYPVSPAQRRLLVVQEISGAATAYNVPLILEAKGALNPEKVNETFR KLIARHEALRTSFTRIQEEYVQVIHDPAQVSFQVEVTELTNLSTDWTDDQSEAHIQTIAD GFIRPFDLGTAPLLRAGLVKTEAERHLLLIDMHHLITDGTSLERMTEEFTRLYREEELEE LSVQYKDYTMWQNQLSADGTVVRQEKFWLDTFSGEIPVLNFPSDYARPQLQSFEGAVYGF EANHELTRRLQQAASRQGATLYMLLLAAYNALLAQYSGQDDLVIGTPVAGRPHADLEDVL GMFVNTLPLRNYPSGSKTFAAFLDEVKQNALQAFENQLVPLEDLILKLQLRRDVSRNPLF DTVFVLQNTESRELGADGVEFAAVEHHNGISKFDLTLTAQETESSEGPLLSFSFEYATKL YKEDTVRKFADHYVQLLKQISENPDMLLSDIDLLTVSERDLILEQFNATKTEYPRDAAVH ELFEEQAALRPDEAAVLFGDKEITYAELNRKANQLAWKLREIGVGKDTLVGIMAERSPEM IVAILAILKAGGAFLPIDPSYPEDRIAYMLDDSAAAVMLAGDPNLAQSLLGGFKGTVFGL ADPSVYAGSESNLPRTADAESLAYVMYTSGSTGRPKGVMIEHRSVVRLVKNTNFVTFEPS DRILLTGALVFDACTFEIWGALLNGLQLCIVPESVFLHAGKLEEALQAYGITTMWLTSPL FNQLALTNPALFAPLRYLLVGGDVLSPTMIASVRNACPQLTVINGYGPTENTTFSCCFPI DREYGNIPIGRPIANSTAYVVDLSGRLLPVGLQGEICVGGDGLARGYLNREDLSREKFVP NPFRPGERMYRTGDLGRWLPDGSIEYLGRMDQQVKIRGYRIEPGEIETRLLGHESVREAF VAVKESGEGSKFLCAYIGTSEYLTPSEVKAYLSGRIPDYMIPARYVFLPSLPLTKNGKID RRALPEPEQDGLSSFPYAPPKSTKEKLLAGIWESVLGVERVGLDDNFFELGGHSLKAIQL ISKAQELGLEIGMHQLFQVQTIRGLSELLPAFKEAEESGSESPRKHSVHVRDNAGVKTFE EAEQLLHVTFGPGFRLKADMREDKKVVLLQLIPDHEKRLPEIIELIRSNFHEDLHPHFIV PQGVSEDGNGERFAARENGQTGQELSAEALNLTESDLQDTLMHVLKEVSSSNEAWGTALA QMPAAEQYSLAPIQEYHLAYPEASGTLLSFDEMIDTQRLNAALQRVIGKHDLLRSQLVQT GEQWRWELKVRSPGFALPVVDLSAYLPSVQQRIMSGLLKELYFRPYELGGSALYRFALVS FNLREHYLLLPCSHIIFDGMSSEILRTDVLAFYNADEEQASRHEINRPDHSYRSYVGQVR QGPAGIGDAEINERFRLESFYQQTLVIGEALQGKNRSKATKYLHEISMEGQAAETDLAER MWHKALDLAERFFSRYFGLEDVPVWLTNYGRHYTGRHYYDTIGECIDQIPVLLDRISDEE KRSVQNLLHTASTHNLNFFNLIYNRETAEDYPLSGYYLQNSLHKLPIVVNYLGEIQKDGG LLQKLDDPDFNSTEVRPVIYFTVQHTGNLLHISLLLPYEEDEETIRRMFESVNPTFQTIK Q >gi|333607711|gb|AFDH01000031.1| GENE 12 20883 - 27452 4560 2189 aa, chain - ## HITS:1 COG:BS_ppsC_1 KEGG:ns NR:ns ## COG: BS_ppsC_1 COG1020 # Protein_GI_number: 16078893 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Non-ribosomal peptide synthetase modules and related proteins # Organism: Bacillus subtilis # 3 1072 4 1050 1050 897 45.0 0 MSQVKIKDIYPLSPMQEGMLYHSMLDRDSEAYFQQNIITVGEVLDRELVQKSLQLLIERY DIFRTVFVYKETERPLQVVLQEREAPSVHTDDVSGLSEARKTAALEQFTGSDRTNGFDLE KDVPLRLALFKWSETTCKLVWSFPHIVMDGWCLGIVANDFFSLYTSLRDGIRANLEPVYP FSSFIQWLENQNREEAAAYWSKYLDGLENETTVPGFSRAEGNTPFRLEHHSLKLDAALTH KMEQIAKRQQVTVSTVFQTAWGVLLQGYNNSTDVVFGTVVSGRPEEIKGIENMVGLFINT IPLRISGEKSESFAALLSRVQSDWMESNAHSYLSLADIQAQSQLKHNLIRHLVVFENYPI SEELIGTGDETGEGGRTDGESAKNSLRITEVDGFEQTNYELTLTVIPGRELEIKFSFNAE IVGHAGIRAIAGHLHQVLEQITETPDIPLDSINLLTDEECGQLRAFNDTGASYPAEKTMH GWFELQAAMTPEKIAVIFGEKRLTYRELNVRANRLARQLRLKGVEPDSVVGILCERSIEL MVGLLAILKAGGAYLPIDPGHPQERIDYMLADSGAVLVLAQKDLLERAPAGAETVELDAE NLLTGDGSNLSRGSGPEHLAYVIYTSGTTGNPKGVMIEHRALINRLHWMQKRYPLDEKDV ILQKTPYSFDVSVWELFWWGAYGAKVVFLEPGAEKDPAQIARAIDKYNVTTMHFVPSMLS VFLDHAESRLEPGALASLRYVFASGEALNPQQANRFNSLFYRTNGSRLINLYGPTEATID VSYFDCSFGKSPLDRVPIGKPIDNIRLYITDNVGRLQPVGVAGELCIAGTGLARGYLNRP ELTAEKFAAADFDPSGRIYKTGDLARWLPDGNIEYLGRLDHQVKIRGYRIELGEIEAALL RHPMVKEALVMDRTDGQGQKVLCAYLVCGPDPAPETVLLRESLAAKLPGYMIPSYFVFLP EMPLTSNGKVNRRALPAPDTVWDESGYIPPEGEMEEALAAIWKEVLGVEHLGAGDSFFDR GGHSLKAALLVSKIHQRLQVDLPLRQVFESPTIRSMAEAIRKEAYSAHQAIEPAEPRDVY PVTSAQKRLMVLDQLEQESTAYHIPHVLISRVPLDRRRLQTVFEKLIARHEPLRTSFEQI ESDIVQRNHPEVVFEVEEISLSGAEETSLTELGGSGETKEKSGIEEIPAFSGLWEIVKTD EEIAPENTGGNGASDHPENRTAVQDILTPAEKEALDRVIEGFIRPFNLAEAPLIRVGAAD LTCGGTALLIDLHHIIADGVSMAVIANEFNRLYAGEELAPLKIQYKDYAVWQQKRSSSGV LDAQEAYWMEKLSGELPVLNFPTDYMRPPLQSFEGDQFVFKLESSETEALKQTAARAGAT LYMVLLASFNTLLHRYTGQEDIIVGSPVAGRTHADLQPLIGMFVNTLPMRSFPAGDKTFS QLLEEVKQTALQGFQNQEIPLETILDKLSLKRDLSRNPLFDTMFIFQNLGIEEIGQPGEL FQSYEFGHAVAKLDLTLQAEENETGGIDFHFEYAPGLFRKETVQRLAGHYLRILEAAVRN PDMKLSAIDMLEERERHMLVESFNDTTAAFAYDKTIHRQFEEQVTLTPDAPALLFGDQVF TYRQLNEKANSLARTLQSHGVGPDRLVGLLTERSPSMMIGLLAVLKAGGAYVPIDPDYPA ARVAYMLEDSEARVLLTEGALAEGLQTAGAVISLDEEGVYSGETGNLEPASKPHHLAYVI YTSGSTGNPKGVMLQHRSVSNFFTGMREKIEFVPGRKILALTTVSFDIFVLETLLPLTCG MSVVLAETLHQTEPGALSGLISVHGIDTLQITPSRLQMLLGSPEGASSLKNVRNILVGGE AMPTALLRSLQEFPDLNIFNMYGPTETTVWSAVQNLTNAASIDIGRPIANTQIYIVDAGG KLQPAGVPGELCIAGEGLARGYWNRPDLTAEKFVPCTFGKGGGRMYKTGDLARWLPDGSL EFLGRLDHQVKVRGYRIELGEIETALVHHEAVEEAVVLAREDVSGGHTLTGYLVVKTEIP AAEIRTFLGQSLPDYMIPAAFAQLEKFPLTPNGKTDRKALLGLDAVQTSAADYVAPGDEI EEQLAAMWAGILSATRVGVHDNFFELGGHSLKASLFVAQVREQWGIELELRQLFRQPTIA EIAEHLRKELDEIRRLEEILREIEALEQV >gi|333607711|gb|AFDH01000031.1| GENE 13 27547 - 35505 6420 2652 aa, chain - ## HITS:1 COG:BS_ppsC_2 KEGG:ns NR:ns ## COG: BS_ppsC_2 COG1020 # Protein_GI_number: 16078893 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Non-ribosomal peptide synthetase modules and related proteins # Organism: Bacillus subtilis # 1092 2644 1 1500 1505 1191 42.0 0 MSKGLEIEKMSHLTPLQEGMLFHALMNPDSHAYLEQVSLSIRGDLDVQALERSFCLLVKR HETLRSNMYHKNVAKPRQIVFKEREASVFFEDLAVLPDSERNTELESLIQADKNRPFDIS KELLVRLTVLRTSRQEYTLLFTFHHIIMDGWCIGIVLEELLSYYEAEKNGRQASLPEVRP YSLYVQWLQKQDQTAASDYWRALLEGVEEPSGLPGNTGISGGKGYLPSERKFTVGADTAR QLRGIAERSGATISSLFLAAWALILGRYNRSEDVVFGTVVSGRPPEIEGIERMVGLFINT VPVRISLQSDNTFTGLLKEVQRQTIQTRAYDYYSLAEIQAQSALKQDLIGHIVVFENYPL QELIGQEDLENRLGFAITEAGLSEQTPYDFNIEVEDGDVLNITLSYNGHTYGEAEIMRIQ GHLETVLGQASSQPEKIVSEFTLLSEPERKELAEVWSGTSASYPEGTFHELFEAQAVQTP DKTAVVYEETSLTYRELNERANVLARILRKQGVRPDSPAAVLLERSADMVTAVLAIQKAG GAYIPIDPTYPAERIAYMLRDSGARVLLTQAKLTDLLHGADYLGSILDIQGFLEAAENQG FVTPLKAGAKEAPDSGEEKAWLSGLNPEEAVSNLEPVNKPDDLAYVIYTSGTTGNAKGVM IEHRHYVNTSFGYRYGYRLGGFDVKLLQIASFSFDVFAGDLARTFVNGGTMVICPQEVRI DPSALASYLEKHRITVFESTPALILPLMEHVYDYGTDISAMKLLITSSDSCSVHDYRTLL SRFAGSMRIMNSYGVTEAAIDSSFYEEAAEKLPESGNVPIGKPLGNHRFYIVDSALRPVP VGVAGELCIGGDSVARGYLNRPELTAEKFVPSPFAEGGRLYRTGDLARWMPDGSVDFIGR IDYQVKIRGYRIEPGEIESALLKLEGVAQAVVTDRTDSSGHKYLCAYVAGHADEAWLRKR LSAELPGYMVPAHIVRLESLPLTPNGKIDRKALPAPSGDPAPVSAYAAPRTLTEAQLAEL WQEVLGVKTVGIDDSFFELGGHSLKAVLLIGRIAKQFSVEVPLREVFAHPTVRGLAPLIA GSEESAFADIEPVGEKEYHPVSPAQKRLLIIDRLGDAESAYNMCAALEMTGPLDRERLDE AFGTMIGRHESLRTSFAVIDGAPVQRIHKTLGFRVSYRELDSDGHHEARAEAATALVSEL TEEAEAVSGGVQVGAKQPDSVLESLIGPFIRPFNLEQAPLIRAELIKLEEGRHLLLADMH HIITDGISIEVFVEEFSRLYAGETLPPLRIQYKDFAAWQNGQIAQGATEKQAAYWKELFG GGEDVPVLDMPADYIRPAIKSFEGDSLICEIDSGLTADLHRLCAQTGTTLYMVLLAAFNT LLHRYTGQEDIVVGSPVAGRPHPDLETMLGMFVNTLPMRNFPSADKPFTHFLKEVKDRAL HAYENQDIPFEEVVERLQLRRDVSRNPLFDVMFVLQNTGMNQFQFDGITFRPVEFEMGIA KFDLTLSVEEFPDRLGLSFEYAVKLFKRETIEKLSRHFLNILETVVRNPHVNLADIELLT ETEKRRIIVEFNDTKAPFPEDKTIHGWIEEQAAEDPDRIAVVFGGNRLTYGELDERANRL ARTLRAKGARPDGVVAILTERSAEMMIGLLAILKAGSAYLPVDPAHPSDRVGFMLDDSGA RIVLTASKWAEQLPAGYECILLDEEKSYHEDFSPLSSEGAAGPGNLAYVIYTSGTTGNPK GVMIEHRALVNRIHWMQKKYPIGRDDVILQKTPYSFDVSVWELFWWGTQGARVVFLAPGG EKEPQVIVDEIKRSCVTTLHFVPSMLSVFLDHIEQNRQAGDLGSLRYVFASGEALQAQHA NRFDRLIGTPGGAVLANLYGPTEATIDVTYFDCPSGQQLEQVPIGKPIDNTELFIVDAKH QIQPIGVPGELCIAGTGLARGYLNRSELTAEKFVPIPHRPEAKMYKTGDLARWLPDGSVE YIGRIDHQVKIRGYRIELGEIEARLLNRDEIKETIVMDRTDANGQKYLCAYLVCAEDAEL TVSEIRGGLAERLPDYMIPAQFVFLDAMPLTSNGKINRRALPEPDGSVRLTADYVQPETE MEHTLAEIWQDVLGIKKVGVRDNFFELGGDSIKALQIAARLNGSGLKMELRDLFRHPQIE LVIPYIQVVQRTIPQGIVQGQTELAPIQRRFFERHHTDLHHYNQAVMLKSKGRLNEEALR QTWDKLTLHHDALRTVFRPTEEGGVTAETRDWKEGEAYELLAYDLTLAREPGPEIGTLAD KLQSGFALNRGPLVKLALFRTAESDHLLIVIHHLVVDGVSWRILLEDLETAYGQVLDGLA VSLPAKTDSYREWAARLAEYANSSRAQSELSYWSAVSSQIPDSLPYDNKAASDKVEDGRD FEIELDRDSTEKLLKHAQQAYNTEINDLLLTALGLSFQEWSGLSRIAVSIEGHGREEIMK DVDVSRTVGWFTVMYPFVLDMRGQGDLGHQIKLVKDGLRRVPNKGIGYGILRYLTEGIHL EELPFAFEEPQISFNYLGQFDGEGDGGARFGPSSHQTGDEIGGGSERPFAFDINGQVSDG VFRLTFNYNRHQYRDDTVEKLAGGFKKYLLELIRHCCEKETAEQSPTDFTYQNLSIGQFE NMAAQLAGKLKL >gi|333607711|gb|AFDH01000031.1| GENE 14 35529 - 48275 9452 4248 aa, chain - ## HITS:1 COG:BS_ppsC_2 KEGG:ns NR:ns ## COG: BS_ppsC_2 COG1020 # Protein_GI_number: 16078893 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Non-ribosomal peptide synthetase modules and related proteins # Organism: Bacillus subtilis # 2745 4248 1 1505 1505 1063 39.0 0 MKVEQFQTLIDVIRDRGDKKSSGITFINGDQNEESITYGELLEDALGVLYHLQSSGMKAG DELLMQIDDNRSFLNVFWGCLLGGIIPVPVTVGNNDEHKMKLFKIWDTLNNPYLITEGKA LDNLEKYALQNGKEEVFEKVREVSLFTNKVHYSTGYKGVIHEAKASDLAFIQFSSGSTGD PKGVMLTHENLIYNTRDMAVQTEMDETDAYLGWMPLTHDMGLIAFHLTCVMSNTRQLIMP TALFIRRPSLWLKKASEHKATQTCSPNFGYKFFLAQYKPENAADWDLSRLRLIYNGAEPI SSELCDVFMESMSKHGLRSSAMFTVYGMAEASVGMSLPPLEENFRRLHLDREHLNIGEKV VQIDASDNRCLTFVDVGHPLRSSYIRICDDANLPLDDYVIGNIQIRGMNVTSGYYNNPEA TAKVITPDGWLITGDLGFMREGRLIITGRAKDIIFANGQNVYPHDIERVAEEVEGVELGK VAVCGAYDPATRQDRIIVFVMHTKKIEDFAPLAKRLKGHLNYRGGWDIQAVLPIRRIPKT TSGKVQRYKLAQDYTDGKFEETLAGLQKIWEQEKQLARAAVIPRSVAEQKLLAIVKQILQ VDEIDTNESYFDIGASSLQLVQIVEELETQLGVQVSVTDFFSYPTISKLAAFISQGDEAE HFEQSDRLADSGQETDGDIAIIGMSGKFPQADNLKQFWTNISEGRDCIAPYGEKRRKDAE AFISHLNTEGRDLSLAEGGYLDEIDTFDYSFFKLTPREASLMDPNQRLFLQTVWSTIEDA GYGGSNLSGKRVGVYVGFSKTSFEYERLLSEVSPASLPNFAIGNLSSIISSRISYLLDLK GPAVTVDTACSSSLVAVHLACKAILSGDCDMALAGGVKTILLPVKAGIGMESSDDRARAF DDSSDGTGWGEGVGAVFLKPLGKAIKDKDNILAVIKGSAINQDGSTVGISAPNASSQADV ISQAWRNARIDPETVTYIEAHGTGTKLGDPVEIDGIGKAFRRRTKRKQFCAISTVKSNIG HLYEAAGIAGLIKTVLSLQHKQIAPSVHYRVPNRKISFEESPVYVNTRLKEWQTEGAPRR CGISSFGFSGTNCHVVLEEYTGASEALPEASAANGGSEGSVPLLLTLSAKTEEGLQELIR DYDKLFAHSDELDMQDVCYTAGTGRSHLTYRLAVTATGAAELKQKLQRLHREGKGSDGVY IGKIDSAQAQEYTHPGNLADLGAEAVQELARQYVQGASVDWKALYAKGSFRKVSLPTYPF QRKRCWIDVPVKAVEAASAAQSRHSAPTGQPEREQYISAKEQVSVVNEQLQAETTSARHA DSVRQTLITMIGNVSQLSTEELQPQTHFLELGLDSINLSQVRHSIKDAFGLDVPMSDFFE SLTNLDLLTAYIVERVPQAETASVIRSDAALQAPPAETASAVYERTVPAEPYSYSQPAGT AGGQGQAEAASVPVAGIAGSSASSAVERIVEQQLQLMSQQLQALGSRPAAQAPLSVQPAA VPAPAPAVRVIAASPAQSDARLHAGTAREVAAAVETRPAPQQVNGEEPKPYVPYKALDLK ARESLSQRQEKHVRELIERYTARTGRTKAYTQQYRDVYANNRNVAGFRPLLKEMVYQIIS ERAEGSKLWDLDGNEYVDLTMGFGVNLFGHNPAFVREKIERELANGMCVGPMSNLAGQVA ESICRMTGVERIALYNSGTEAVMVALRLARASTGRAKVVIFAGSYHGTFDGVLALGSAGT NKEHSTPLAPGILQNMVDDVVVLNYGSEDSLEYIRTHAHELAAVVVEPVQSRRPDFQPKA FLEEIRRITAQSRTAFIFDEVITGFRLHPGGAQAWFGIKADLVTYGKVIGGGMPIGIVAG SSAYMDGIDGGTWKFGDDSFPQNEHRRTFVAGTFCHHPLAMAASLAVLNHLEASGGQIQA ELNARTARFADELNTYFGREGVPIKVVHFGSLFRFVLKGDLELFYYHMLDKGIYIWEGRN CFLSTAHSEEDISRIVQAVKDSIGELRKGGFLPDRDPSPDDDDPSGSRLPADKLPEGGQG EAFPLTPDQKQLWFASVSNRKDSPSLQETALLRFRGPLRNEVFEQAVRAVTARHEALRLV ISQDGETQNVTDALNVPVPVVDLTGLNPSEQERRMRNWLHRESQTPFDLEQETPLFRIHL LRTSADEHTAVFTFHHLIADGWSMALFVQELERIYSALVRREAHRLPEPAPFRKYAAWQS EQLKKPQSAQAAAYWNGLFEKQVPVVELPSPVRGTVLPTSRGGRHTTVLQASLVQELKKT SIKLGSSLFVTLLSGFHLFLHRLTGQSDITVGVPTAGQAQMEAPFLMGNCVNLLPVLSRA SSEQSFAAYAGSIKQRMNELDAYQAYSFAALAERGLRNLPVLTAVFNMDRPLPKLAFHEL DTELLVHDPAYCKYELFLNVTEISKELRLDFDYNADLFQPETVETWSRYFIRLLESIAEG GDKRLPELSLLSGEESERVWARWALHADENGSYECILDAYKYPAPPGTIGEVYAVSGGKV KSPSNRFTSTGKWAYSYASGAIKRLGKTSRSVLVRGNRVFLDQIEEHLLHTLHLEACAVT AHLHPENEAVDYMTAYIVANPSKIWKEIESFSLLHETLPDYAVPRYVIPMAELPLLPDGE TDFAALPVPAGGNLPVPGKQNLQGTVTDKLIAIWKDVLGAAHVNSTDNFFQLGGDSLKAT VILSRVNKEFGIHIPLSELFALQTVGELELYITGGSAQTYEPIQPVQRKRSYPVSSAQKR MYVLDQLGGGGTAYNVPGRLFIEGEIDRERLIRALRQAVARHESFRTYFELENGEVVQKI AEEADFDVPVSEVRAEEIETLQMQFVRPFDLAQAPLFRAGLFELETGGSVLLIDVHHAVA DGYSMAVLMDDFIQLYQGRLLPPRNVHYKDYAIWQNEQLAEGKFSGQEAYWLQTLEGELP VLQMPTDYPRPAAQSFKGDSFVQLPDGNMTKALYSLAKDNETTLYMVLLAAYNVLLAKYS GQDDILVGTPAAGRRHADTENMAGMFVNTLAIRSKPESSMAFGQFLQEVKRQSLEAFENQ EYPFEEIVEKLQLVRDLSRNPLFDTIFSLQNVGTDVVKAGKLSFKPGEFNTGISKVDFSL HVTEQKDGLLFTWEYATDLFARETVERLARHYSAILETVAGSADILLGDIGMLTASEKED LISGFNATAAEFPSGITIHEAFEEQAAKTPEAAALVFEGRSLTYRELNERVNSAARTLRK LGVGPDRLVGLMMPRSAEMIIGQLAVLKAGGAYVPIDPDYPSARVLYMLQDSEAGVLLTS RSLIEDLDYDGSVLFLDEEEIYRNDGSNLDAGGTKPEHLAYVIYTSGSTGNPKGVMLPHR SVMNFVTGMKEEIAFRADKTILSLTTISFDIFVLESLVPLLTGMTVVIGDRHHQLEAEAL GELIRSREIDMLQMTPSRLQMLLANEEGKRALSGVKEIMVGGEALPHALLEQLQTLDGLR IYNMYGPTETTVWSAVRELTQASRIDIGRPIANTQVYIVDARSNLQPVGVPGELCIAGEG LARGYWKREDLTAEKFVPNPFVAGTKMYKTGDLARWKPDGNLEFLGRIDHQVKVRGFRIE LGEIENALIRLPSVQEAAVTVNQSGGHEAVLCAYVVPKSDSAISAAEVREQLARQLPYYS VPSHYVFLDKLPLTPNGKTDRKSLPEPDDLFRPDTEYAPPRNEVEEALASVWQDVLGRDG IGIHDNFFLLGGDSIKGIQVVARMRAEGYALDIKQLFEHPSIGDLGAYVKSSVREIAQGP VEGEMVLTPVQNRYFEQGGYESASSLSALLFSEAGLEENHVRSAWDKVLKQHDALRLRAV LKEGDLKLEHRSLEEEAAGLSVIRLDGDKPDLRAAVELQSKAVESGLSLKEGPLAKSVLF KTGEGDYLLIAIHRLITDDTSFSVILEDLATVYGQLVAGESVSLPLKTDAFRTWAAHLEK YAESNQAQAGREYWTLSGNADEWADPLDKEIEAGLPSLRNSICAVIPAEKTSRLLTGVKD IYSMEAREAILSALGKTFGDWSGLKRFRVELTADGRKLCADKRLDFSRTVGWFDTQYPLV LDTSNSGDLAGYLKQVKETVRQVPDGGIGYGALYDLASSRRQVEETAVRKKPRIGFVHLE PSGVVTPYFDSFNAGERITDDLWAAREYSWYLKSTIESGALTLRLDYDGHAYTEQTASDL LHRLEENLDEVLRHCEAKTERELTPADVGANDLDLDEFEDIKQFYESV >gi|333607711|gb|AFDH01000031.1| GENE 15 48297 - 49511 907 404 aa, chain - ## HITS:1 COG:BH2492 KEGG:ns NR:ns ## COG: BH2492 COG0331 # Protein_GI_number: 15615055 # Func_class: I Lipid transport and metabolism # Function: (acyl-carrier-protein) S-malonyltransferase # Organism: Bacillus halodurans # 1 300 1 300 313 199 43.0 9e-51 MVTTAWLFPGQGSQYVGMGAAWYARYDGAKALFEEASDLAGYDMKSLCFEGSAARLSRTS FTQPALLTVSVLASRVYLHEIGIEPRYSAGHSLGEYSALVSSGVLTFAEALGLVIQRGKF MEAAEAGLGSMIAVRTSDQPMLEELCRRHYSDGQPAAIAGYNSGSQLVVSGHRSAVASVA EELERLGIEVTRLAVSGPFHSVLMQPAAESLEEALNKVTFKEGRWAVISNATALPYPDAA AIRRGLVDQMTKPVKWLQTVRFLAEEGVELAVELGPRTVLKNLTRDSSEQIRPYAYDREA DAGSLADLFPVRQFIEEGFSAAVSAPNANWNEEEYAQGVLEPVRRVREMLSSYTETNGSV RDAYGLRQDVQECVRQVLRTKKVSEKEQDETIRRLFTGSFTKNL >gi|333607711|gb|AFDH01000031.1| GENE 16 49526 - 50248 423 240 aa, chain - ## HITS:1 COG:alr2045 KEGG:ns NR:ns ## COG: alr2045 COG3208 # Protein_GI_number: 17229537 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Predicted thioesterase involved in non-ribosomal peptide biosynthesis # Organism: Nostoc sp. PCC 7120 # 6 233 25 251 253 172 38.0 5e-43 MKKIFLFCLPYAGGSSVIYTRWKPLLDSGIELVPLELAGRGRRISESFYENVDEAVNDLL PVVEPYLDKGQAAFFGYSMGSLIAFELIHRIREKHGQSPLHFFAAARMAPHIQRTEPPLH GLEPELFKTKIADLGGTPPQLFENSELMNLFLPLLRADFRLVETYAFAEKAEKLDCAMTV LAGKRDTMRETDVLDWRRHTTGAFTAHSFDGGHFFINDFQKEIVDILHASLGIRYSSMYA >gi|333607711|gb|AFDH01000031.1| GENE 17 50307 - 51608 1266 433 aa, chain - ## HITS:1 COG:BH0919 KEGG:ns NR:ns ## COG: BH0919 COG0160 # Protein_GI_number: 15613482 # Func_class: E Amino acid transport and metabolism # Function: 4-aminobutyrate aminotransferase and related aminotransferases # Organism: Bacillus halodurans # 1 422 6 424 427 444 53.0 1e-124 MNSFELLESNVRSYSRVFGDVFRTAKNSMMFTEEGKCFLDFFAGAGALNYGHNPDFIKGK LLEYIGSDAVVHGLDMYTTAKRTFIETFNELILAPKGLDYKLMFCGPTGTNAVEAALKLA RKAKKRTGIFSFSGGFHGMSYGALAATGNLYNRGGAGAPLHNVTFMPYPYGFNESFDTIG YMENVLTDANSGIEKPAAVILETVQAEGGVIVAPVEWLQRLSALCKEHDILLIVDDIQVG CGRTGSFFSFERAGIQPDLVVLSKSISGYGLPMSLLLLKPELDVWQPGEHNGTFRGNQLA FVGATAALEFRISSNLEESVKEKEAWVSDYLQKEIVPLHPAITVRGLGLIWGIDLGGLEG GEQAAKFVASRCYDQGLIIERSGRNDTVVKLMPALTIDSELLEQGCTIVKEALAAYFEQA GLSTSKEATLEPV >gi|333607711|gb|AFDH01000031.1| GENE 18 52088 - 52960 331 290 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 6 241 5 244 311 132 33 2e-29 MADILLSMSNIGKQYQENVWGLRHVDLQVQPGILGLLGPNGAGKSTLMRLLATISEPSEG TITWNGVGIGEHPEEIRRILGYLPQDFGVYPHLSAHEFLNYMAAVKGISGKAAEKRIDEL LGLLHLYDVRKRRIGSFSGGMKQRIGIAQALLNDPKLLIIDEPTIGLDPAERLSFRNLLT DLSGERLIIFSTHIVSDIEATADRIAILSKGRLISDSNPGELLRHVQGKVWNVVIPESQL QEARAKWLISATVRREDGLLLRVVSETPPNEQATAVHAGIEDAYLYLSAG >gi|333607711|gb|AFDH01000031.1| GENE 19 52977 - 54617 1059 546 aa, chain + ## HITS:1 COG:no KEGG:MCP_1301 NR:ns ## KEGG: MCP_1301 # Name: not_defined # Def: hypothetical protein # Organism: M.paludicola # Pathway: not_defined # 1 532 1 529 537 285 35.0 4e-75 MNAWKITYQVALADFLERTRRFSFLVTLGLTILAAYLFVPPSDAGYVTLYFEEFRGIYNS AWVGGTTAVSTSLFLSFFGFFLVRNGIERDKRTRVGQIIEGSSLKKSHYLLGKALSNFLV LAVIAAVVIPVAICMQWVRGEDYTLHVGAYLAPYLFVVIPALAVVSAMAVLFETRPVLRS PFGIVLYLLLFTGVTMSTLYSGMGNDVITKAMREKLMLTHADYEGTYGQGILFLESPLKL FVWDGISWTWDVVIKQVALLLVAVLVCLLASRLFRGFKESPVVVQGPSAGTAAGQAVPAR SRGGRAPAPEQAKKTPAEPAAAKSPALTSAAELTPVRVNNRFLPLVGAEFRLQFAGFPPG WYVVAVILALLCLFLPFTTALRWIWPLAWIWPISLWSSMGNREYQYGTLSILASSPGYIR RQIPAVWLSGFLAVLLTGSGMLIRFIVTGDVVHLIYAVAAAFFVPSFALALGIWTESKRP FELIYMLLWFLGPFNQLFYADFMGTAVPVGSVNHLTSASLLIIAVLLAASVLLVVAAYSK RKLKVK >gi|333607711|gb|AFDH01000031.1| GENE 20 54715 - 54954 406 79 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MAAYIFRFLKPFVLLGVILGVIVFILNVLGLEIPMVVGNTTYRGTEAAIMELIGIPVALV LLGTIIGSIAYMSNNSQKY >gi|333607711|gb|AFDH01000031.1| GENE 21 55019 - 56665 1462 548 aa, chain - ## HITS:1 COG:TM0336 KEGG:ns NR:ns ## COG: TM0336 COG1073 # Protein_GI_number: 15643104 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Thermotoga maritima # 204 540 78 410 412 117 27.0 8e-26 MKIQPPRMLTIVLSAAIVGSCIPVAAMASQDGKIPQTLASQASAAGEDYLPLRALCEWVG IPIEWDEAKRTVTAAKDKHILSFVLAKSGMPAAGLEGIPLAPDEVILLDSIAYIKRETAV KAFGIEAAWRGGKLEIPTRDLAARARAFVTQLQKNNCAGTDALTNDAFKEAGLPEGTVQL VKQLAQFPITQERIESNAVHRTVILTSESPQMNFDLEIRFDKDGYVDDFYAGMSFAGYKA PSYDKPGAYNERRMVIGTGDRAVEGTLTVPAGTGPFPLVILLQGDGELDRDSTVFAQKPF RDLAVGLANQQVATLRMDKTTREHFAQLNGLYTIGDEFVEPVLEAVKAARLDPDIDPGRI YTAGHSRGGWMIPRLLAKDTESLIKGAVVLAGADPRYTEIDSYEHEELGGMIPKEQLAYY RKQLELVKADSFDPKSPPAAFELPPNPYWWHDIRGYSPADEAKLRSAAMLVLQGEEDFQV PLVSLKGWKEVYAGNAAVTYKTYPKLTHLFTEGKLENGIGNYKIPANVPDTVIADIAAWI NGSASVLK >gi|333607711|gb|AFDH01000031.1| GENE 22 56844 - 57821 784 325 aa, chain - ## HITS:1 COG:DR1137 KEGG:ns NR:ns ## COG: DR1137 COG0454 # Protein_GI_number: 15806157 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Deinococcus radiodurans # 10 322 13 312 329 98 27.0 2e-20 MVITIRNMHIPEDYEGTAVLLSTFYSEPITVQRMREEDAAIPQKGALTRDENGRLTGHDR QRLVAVNESGKIIGYGCSWRASWTAPGTLYQKVLVDPAERKNGIGREIYAKLAAYADENG ADKIVGMVRDDDLDSQAYASGRGFVRDRHQFESLIELDGLAPETDGGSADAPEGITLTTL AQDPGEEMEKRIYELYRKTYPDIPGSEGEFMWYSQWRKESLERESFDPSLFLLALDGNKP VGAAELYEMKETNSVYNLYTCVDGDYRGKGIALALKRASIYLAKERGYGYIRTNNDSQNA PMLTINRKLGYVPVPGYYRMFKILE >gi|333607711|gb|AFDH01000031.1| GENE 23 57992 - 58744 207 250 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 5 243 3 237 242 84 27 4e-15 MTTTQRVAVITGGASGIGRQACLKFARKGDRVVVADFNEASGIETVEHIKKEGGEAVFVK VDVSSQESVQALVDEAVAKYGRIDVMFNNAGIGGAGPVLTQNMDLYHKTIAVNQHGVAYG IMAAGNKMKELGIKGVIINTASVFGFLASPGTFAYHATKGAVIMMSKSAALELAPHGIRV IAIAPGAVDTPIIQGFKDNGMLESMKAKVMGGELTKPETVANSVYLLSLEEADAINGSVV MVDQGYASFK >gi|333607711|gb|AFDH01000031.1| GENE 24 58907 - 59803 812 298 aa, chain + ## HITS:1 COG:VC1617 KEGG:ns NR:ns ## COG: VC1617 COG0583 # Protein_GI_number: 15641625 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Vibrio cholerae # 1 236 8 245 296 89 26.0 8e-18 MNLEQLEFIVEVARAGTLTQAAHNKHMTVAGISRSLSFLEKELGVRIFNRSRTGAVPTPE GQMILDKAAAILSQVHQLQAEANSYGKLQNARLRVATIPGPVSLLVDTLTELKKDFPGIR LEMIEKGTKEIIEDVRHNRVDIGFILFPDTILEKNACWHAEPLVEGRMVVGVSRHSALAS AKSISLNQLADHQLVLYHDEYIARFIATLGDSVNVLFTSNNIDAILKAVREGIAVTLGTD YTFYGNPDYENGDIVMVNAELPGEQPSYLWCIHPKEQPYSQAAYLFVNRLKMQLNRRR >gi|333607711|gb|AFDH01000031.1| GENE 25 59946 - 61187 1270 413 aa, chain - ## HITS:1 COG:CAC1447 KEGG:ns NR:ns ## COG: CAC1447 COG0477 # Protein_GI_number: 15894726 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Clostridium acetobutylicum # 5 406 7 397 421 213 33.0 7e-55 MNLHASQVYLRLKFGLALANSVMFTTYAVYFIQTLGLTPLELLLVGTVLELTVLLFEGIT GVVADTYGRRKSVILGMFVMSGSFLLEGSVIGAGAVVPVISLFVWVLISEAIRGFGETFL SGADTAWFVDEVGEEHAGPVFMRAKRWTLTAALFGIGISVGLSTLATNLPFLAGGVIYAA LGVYLLLHMKETKFVRQQRPPGSGPWTELKSTWLAGAREISSRPVLLMMLAVTVFSGAAS EGYDRLWEAHLLKEIKFPAELSLSAALWFGLISVLTILLSMLAMWIAEKRLNTLDERVVF KSMFVLTALRIAAVLSFAFSPNFGWALVSLLAVGVIGTVSAPLFETWLNLNIESRARATV LSMMSQSDALGQTAGGPFVGWIGNRLSVRASLTTAAVLLLPILFVFGRVLRRR >gi|333607711|gb|AFDH01000031.1| GENE 26 61497 - 61739 249 80 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MARNDDNKMSREEAGRMGGETTSKNHDKDFYQEIGQKGGEARGNNGNNGNGGNSGGDGKM SREEAGRKGGEARARQRDRD >gi|333607711|gb|AFDH01000031.1| GENE 27 61934 - 64246 2226 770 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_3030 NR:ns ## KEGG: Pjdr2_3030 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 1 766 1 773 782 867 54.0 0 MRKQLTWSLAAILCAGAAAGCEGRESAKAVISATGAYAHKDFTFDVRPETFEITLSRNGV KESVSLPLPVSPVSRVVRKADTVTWSIPGKADIQVRKKENYLDVTITSTGAETFQWPRVT ADSYLLPLGEGKKIPANDASWMQFLKEETLNWSESFSMDFFALNKQAYSIVYIVKNKFNN EVRFKGDSAIGFDFSHEFPSLTPDKSYGFRLYVTDNDPVSAAKTYQAYRHEMEPFLTLAD KAKANPEVAKLFGAPHIYLWNEQLLAETDVDWSKIRSRLESPLGPWIAELLAAHTEDGAG EFNSVLKQMRAQDYFDAYQKKIVLRAMNAVLKLKPFYKAELFPDLDSQTLQLAAKGTDRL SKQQTYELNKKILKSALQDAVTDIGTWGEDHSAKLVEDMKQAGIANAWIGLPNWSDGLMN PGFVRKTNEQGYLIGPYDSYHSIQQKENPSWNTAYFPDSTLYEQATIAKKDGTKIGGFLG RGRKLNPALSLPSVKQRTQAILQDGIAFNSWFIDCDATGEIYDDYTAAHPTTQLQDLKAR LERIAYIANEKKMVVGSEGGSDYAHNTIAFAHGIETPVIQWADPDMRTDKSSEYYVGDYY SPQGTIPERYGKQVPIKPLYHTIYTDPAYSVPLYKLVYNDSVITTHHWEWGSDKIKGEVG DRMLKELLYNVPPLYHLDRQVWEKEKARITAYLKVWSPFHKKAVNREMTGFRILSEDRLV QRTEYGPDLNVTVNFSDKEARIGDQVLPAKSAVIQDGPDQIRFDPQILLK >gi|333607711|gb|AFDH01000031.1| GENE 28 64336 - 65217 625 293 aa, chain - ## HITS:1 COG:BS_ykuE KEGG:ns NR:ns ## COG: BS_ykuE COG1408 # Protein_GI_number: 16078469 # Func_class: R General function prediction only # Function: Predicted phosphohydrolases # Organism: Bacillus subtilis # 28 285 30 283 287 202 41.0 4e-52 MNTTKSWLQTALALGLIVIIFFMGTVLYAIRIEPARLSVTRHSVYSGKVPEAFSGTKIVQ FSDTHIGPDFTLQQLKKAVALINGEKPGIVVFTGDLFDSMGRYGAGREQISSVLAEIHAP LGKFAVYGNHDRGGGGSPFFAPLMQRAGFRVLVNEAYRMKGPGGKAMTITGLDDYLLGRP DEKKALSSLNKEEFNLLLVHEPDVADRLLPYPVDLQLSGHSHGGQVRLPVLDAPVKTRLA EKYESGMYEIGETGDSRLLYVNRGAGTTRMRIRLGSEPELSVFTLSRKPGSPS >gi|333607711|gb|AFDH01000031.1| GENE 29 65347 - 66786 1198 479 aa, chain - ## HITS:1 COG:CAC2434 KEGG:ns NR:ns ## COG: CAC2434 COG0642 # Protein_GI_number: 15895699 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Clostridium acetobutylicum # 149 464 159 491 492 130 26.0 5e-30 MNKLSRKLFWRLSLLVCFVFVLSFLVNEYFLPKYMLYQKKMNLAALTGEMLQKDAAALVL DKNRLEQEYQVTIVSLDFNAAAGGNANVNAFNDAVRTQLNKEGITLAKFWITADSLDKLS RHEPVYKIYDQGKLETSYLVTLLNIGQTVFLVGDFVAHSEKSLQAVNRFNLYIAVGALLL TIGLSWLTARQIVRPLTAMQKTAEAISNLDFQTSDVRTGDEIELLSRSMDEMSLKLKEAR EELQRQNDNLQTFISDISHELKTPIALIKAYSSGIRDGMDDGTFLGVIHKQADEMAGLVD RLLELARMKNDPNRPEAFDFQLLFGKVAAKYAIEIRRNRLAFEVETPEGGSSRVWSDPQK VETVLDNFMSNAVKYTADGRIKASFEERGGRLTFSVRNGTDGLLPEDIDNLWQPFYVRER SRNKRLSGTGLGLSIASTLLQKLGVPFSAVAQEEEIVFTFSLPLVSSEIQSDKKTLPPG >gi|333607711|gb|AFDH01000031.1| GENE 30 66779 - 67501 763 240 aa, chain - ## HITS:1 COG:CAC3220 KEGG:ns NR:ns ## COG: CAC3220 COG0745 # Protein_GI_number: 15896467 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Clostridium acetobutylicum # 3 211 8 226 228 156 39.0 3e-38 MNILIADDDPDMLRILTLYFQKEGFTVYTALDGEEALNICFAHKIDLAVLDWMMPRVSGI RVCGEIKKRHAAKVLMLTAKSGSEDEWNALLTGADDYVRKPFEPKILLLRAKKLIRAERD IYIGGLRVDMEGGKIFRGETDLGAANKEFLLLKCLLEHKGKILSRETLLDHVWGFDYDGE ERTVDTHIRRLRERIGGGLIKTHRGMGYSLEEPREPQEPQEPTRELAGRKEQEKGHGVHE >gi|333607711|gb|AFDH01000031.1| GENE 31 67633 - 68319 852 228 aa, chain - ## HITS:1 COG:CAC0321 KEGG:ns NR:ns ## COG: CAC0321 COG0745 # Protein_GI_number: 15893613 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Clostridium acetobutylicum # 1 227 1 229 230 290 63.0 1e-78 MKSILIVEDERLIAELQRDYLEVHGFQVEIAEDGENGLRLGLSGNYDLILLDLMIPRIGG FEVCRKIREERDIPILMVTAKKEDIDIIRGLGLGADDYITKPFKPAELVARVKAHLSRYE RLIGPPKSKEEVSIRELVIHFGSRRVFLRGSEITLTTKEFDLLWFLARNPNRVFSKDHLF EKLWGMNSLGDSQTVTVHIRKLREKIELDSSNSEYIETVWGAGYRFRL >gi|333607711|gb|AFDH01000031.1| GENE 32 68316 - 69794 1391 492 aa, chain - ## HITS:1 COG:CAC0317 KEGG:ns NR:ns ## COG: CAC0317 COG0642 # Protein_GI_number: 15893609 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Clostridium acetobutylicum # 1 486 1 498 498 335 40.0 2e-91 MSIRFKLLLSYAAMLVIPLVMMLITAMLLVVVFRGDLQSIKDQYGEGESRFENRGIERLL KEIKRTTEINPAAWTDASYLAEIDGELQRNQSNLILRKGDEIVYAAAAFPYPELLKKLPA YERPGNVVMAKPERIGKQLVEVVHADFKFEDGQKGSLFVVTAVSPFVTFARKFFPILFIA LIVILILTHTLLTYFVSRSIIKPLNTLKAAMKRIEAGDLDSRVVPSGRDEIGELSAAFEQ MRMKLKASIQTQLQYEENRKELISNISHDIRTPLTAIRGYVEGLGDGIADTDEKREKYIG IITSKAEEMDHLIDELFLYSKLDLKRLPFNFEAVDLHAFIEDLSSELEFELGKQGIRYSA DIRLKPHTELAIDRDKIKRVFVNIVDNSVKYMNKPDKQIGLKVLGTGQEVRIEISDNGRG IDAESIPYIFERFYRADPSRNSDTGGSGLGLAISKQIIDGHGGTIRASSLPDEGSCVTIM LPIRTNKESDSV >gi|333607711|gb|AFDH01000031.1| GENE 33 69809 - 70555 700 248 aa, chain - ## HITS:1 COG:no KEGG:TherJR_2635 NR:ns ## KEGG: TherJR_2635 # Name: not_defined # Def: membrane spanning protein # Organism: Thermincola_JR # Pathway: not_defined # 1 248 1 250 250 125 38.0 1e-27 MHRWKAGYVNELYLLLYRKKIGIFGAVSVLLPILFAVSLQALEPLLGLMAVSGSFPVQTL GFYTALWIPLFILTLTGDQFPHEVASRTLKLAFLRPNTRFHVFTAKVAAQGTAVAVLLAL LFAGTLLCAMFTGTPLGLAEGLSAAKAYAAAFAAMLALSAVFVFAAQFFKSASGFVVFGI VLYAAAKLAPFLVQSFPAFSPVSYTDWHLLWLNDGVPAGRRMTAALFLLSSSLLFFALGY YKFDRKEV >gi|333607711|gb|AFDH01000031.1| GENE 34 70548 - 71285 328 245 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|90020817|ref|YP_526644.1| ribosomal protein S16 [Saccharophagus degradans 2-40] # 5 222 12 231 318 130 33 4e-29 MQPILEVSGLTKLYRGSGRGIREVSLRLEAGDVYGLLGPNGAGKTTLLKLITGLVRADGG TVTLFGADRNLHHEQAMANVGCMIESADFPDFLTAWQYLRQSARFYPQVTGQRMEEVLDT VGLLRVRQEKIKGFSTGMKQKLALAAAVLSRPKLVLLDEPTNGLDIEGTVVFRSLIRKMS AEEGTSFLISSHMIHELEQLCSRAGILAGGSLRIEADVSGLVLEGGTLEDFYMKEIRDKG ELQGA >gi|333607711|gb|AFDH01000031.1| GENE 35 71376 - 72341 876 321 aa, chain - ## HITS:1 COG:no KEGG:TherJR_2637 NR:ns ## KEGG: TherJR_2637 # Name: not_defined # Def: hypothetical protein # Organism: Thermincola_JR # Pathway: not_defined # 18 312 1 293 298 172 33.0 2e-41 MPMMTVEVKYEWFRRMKMNKKWLVLGSVIGISSLMMVTTGISAMAGTSGYDAYKSALKNT KTVQSVTVQAAGSLQDNGNVALSANGTFKMSREGGSASGAGEVSAGGAKQALQFYKQGDQ AIFKPGSGDVYYVKDAAAETHKRFKDSAEKEMPQHVETVVDALVGNLKDYVAVDVKEDGS KRVSAELDGAQLPAVVQAIAPIVIKQASKEHGQPEKKADTTANPFGNDFLKGAAPELTDD IRLEKVAVNATISPSNYIQHQEAELTVSGKDAGGKTHQVVVHLQADLSGYDCTTPDTVDL NGKNVQPIESEHRNKWQGKNG >gi|333607711|gb|AFDH01000031.1| GENE 36 72511 - 73527 1065 338 aa, chain - ## HITS:1 COG:FN0885 KEGG:ns NR:ns ## COG: FN0885 COG0614 # Protein_GI_number: 19704220 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-hydroxamate transport system, periplasmic component # Organism: Fusobacterium nucleatum # 63 331 17 281 286 199 39.0 5e-51 MNLMRSLKLSLFLCLTLVCMAAISACSASDSTKELVPRGTAESTGTPAAAVELDNMGQKL HFSEAPKRAVTLNQHATEVMLALGLEKNMAGTAYLDDQILPELQEAYNRVPVLAKTYPSK EIFAEAAPDFAYAGWKSAFTEKSLGTREELAKQGVQTYVQESSNKAAPTLEDVYRDILNI GRIFRVEAKANELVDGMKQRLKDIQDQIGTVGTPQKVFIYDNGEDKAFTAANTYITSLIN MIGGKNIFDDIQKSWVEVSWEEVVSRSPDVIVIMDYGDTPVEKKKELLLGKRELADIPAI KNKRLLVLPLSAASEGIRAPIALQTLAEGLYPDKVHKK >gi|333607711|gb|AFDH01000031.1| GENE 37 73524 - 74330 885 268 aa, chain - ## HITS:1 COG:FN0882 KEGG:ns NR:ns ## COG: FN0882 COG1120 # Protein_GI_number: 19704217 # Func_class: P Inorganic ion transport and metabolism; H Coenzyme transport and metabolism # Function: ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components # Organism: Fusobacterium nucleatum # 3 251 7 256 256 231 46.0 1e-60 MNMEANHLTLSIGARKILDSVNLAVREGEFIGLIGPNGSGKSTLLKTVYRELKPDAGQVF MDERELLNLPYKKAAELMAVVSQESSVEFDFSVADMVLMGRYPHKKWYESDTEADREICF RALETVGLGHFGERSFATLSGGEKQRVLIARALAQQAKFLILDEPTNHLDIRYQLQIMEL VRSLGITTLAALHDLNMAAYYCDRLYIISEGRIAAEGTPAELLVPAVLRDIFGVHAEVNR HALTGKPVITYLPESFYNAGLKQTEESF >gi|333607711|gb|AFDH01000031.1| GENE 38 74327 - 75508 1094 393 aa, chain - ## HITS:1 COG:FN0884 KEGG:ns NR:ns ## COG: FN0884 COG0609 # Protein_GI_number: 19704219 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-siderophore transport system, permease component # Organism: Fusobacterium nucleatum # 65 390 24 344 345 231 41.0 2e-60 MDSPKNINGRGEDLQSVCNKETVRETGEARGARSASAKKYGTARTLTAFPLLLGGLSLLL VISVTIAVMLGSVRIEPVTVWKIALSHMPGIGSLIERDWTKAQEHIIWNIRFPRVLLGLV VGAGLSAVGVTIQALIRNSLGDPYILGVSSGSSVAATLVLLFGGFSFLGAYALPVSAFIG SLVAMALVFTFAKVGGRISTTRLLLAGTAVASMMSAFTSFIVTMAPNAQGIRSVVYWLMG SLAGAKWEYLTAPALIVVSGIVFLLFQHRSLNALLVGEGAAGTMGVNVPAFRTCLVIVTA LITGTIVSVSGSIGFVGLMIPHIVRLVLGSDHRKVLPVSVLFGAVYVIWADVLARLALAP EELPIGIVTAICGGPFFIWLLRRSSYAFGGASK >gi|333607711|gb|AFDH01000031.1| GENE 39 75912 - 77828 1697 638 aa, chain - ## HITS:1 COG:BS_ypvA KEGG:ns NR:ns ## COG: BS_ypvA COG1199 # Protein_GI_number: 16079273 # Func_class: K Transcription; L Replication, recombination and repair # Function: Rad3-related DNA helicases # Organism: Bacillus subtilis # 5 637 7 635 641 691 55.0 0 MRNYPFAFDPTKPFIQQASDWIADVFYELLPEAGFEVRDEQIYMAFQLERAYQEKQTIFA EAGVGTGKTLVYLLYALTYARYTRKPAIIACADESLIEQLVKPEGDIAKLARHLDLTIDA RMGKSQHQYICLNKLDDTRGGAFDDEEVFSEIYHGLPSFVHYPDTLQSFYPYGNRKEYPE LTDEQWERIGWDVFQDCLVCSQRHRCGQTLSREHYRKSADLIICSHDFYMEHVWTYEARK REGQLPLLPDHSSVVFDEGHLLETAAQNALTYKLKHSVFESIVIRLLEGEVRETLALAIE EAIVQSETLFRVLDESSYSVPASERKEFAWSEELKREVSRFRQLIDVIEEELVFESGLST LDDYQLKIVEEHLEMIQLALSLFDKPGQLISWVTEDSDGITLVIMPKMVKEILRDRVFSK KMPVVFSSATLSVNGSFDYMAGSLGIESFLSFSVPSPYDYSAQMKANLYPDKPEEDKTGR VLELLKESDGRALILFPSREALGDFKRNMTRYPESADFRFLFEGSAEISHLISSFQNDEE SVLCAVTLWEGLDIPGPSLSHVIVWELPFPPDDPVFAAKRKDSAQPYEDVDMPYMLLRLR QGIGRLIRSRDDRGMVSVLGHDLDNPTVREQIQGLLPH >gi|333607711|gb|AFDH01000031.1| GENE 40 78058 - 79473 1604 471 aa, chain - ## HITS:1 COG:BH3163_1 KEGG:ns NR:ns ## COG: BH3163_1 COG0469 # Protein_GI_number: 15615725 # Func_class: G Carbohydrate transport and metabolism # Function: Pyruvate kinase # Organism: Bacillus halodurans # 1 468 1 468 473 463 53.0 1e-130 MRKTKIVCTMGPSCRSVEVLKELIAAGMNVARINMAHGELEDHSLQISRIRQAAKETGAI VPVLMDIKGPEVRIGLLKEASCEVKAGDCLTLTSEEIAGDSTRISVNYAELPQVVKAGDK ILIDDGLIELRVVSAAGTEVSCEVINGGVIKPRKGVNLPGVHTTLPGVTERDIRHIEFGI REKIEIIAMSFVRKAEDVLTVRQLLEDQGCGHIQIISKIENQEGVDELEAIVEASDGIMV ARGDLGVEIPVEDVPVLQKVMIESCNRAGKPVIVATQMLDSMQVNPRPTRAEVSDVANAV LQGSDAIMLSGETAAGKYPVESVRTMATIAKKAEGLYMEETGRQQAGVPAEVNVTEIISQ AAVRASEAIGAKAILTPTMSGYTPRMVSKHRPKAPIIAIAPSDEVLNKLCLLWGVLPVKG EFVQTTDDMFQAAVSSGTAQGLLQAGDYTVITAGVPIGKTGTTNLIKIMQV >gi|333607711|gb|AFDH01000031.1| GENE 41 79548 - 80369 735 273 aa, chain + ## HITS:1 COG:BS_ybbB_1 KEGG:ns NR:ns ## COG: BS_ybbB_1 COG2207 # Protein_GI_number: 16077232 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Bacillus subtilis # 93 267 86 263 263 84 31.0 2e-16 MQLYYSTFYEEGTMIKLTNIRHDRLAEWYEESEPGGSAAASFIMLSYGRCLYWIGNDKIM LEQGDLLLIREGVSYYGKSIPTFLHNKYVASFHITETGHELPLLTKPWVKIRSGMAEFLL ERTRKCYSDWKENEPYAAIRGQAILLEMLALLNREADQAAVSSETGKHAERMKQYIRDHY RKKVTKDELGEFISKSPNYAAALFKKVTGQTISEYVHAVRVKKAVYMLMDSLLTIAEIAE FVGYEDVSYFQRIFKKTTGRTPSSYMKERPPRN >gi|333607711|gb|AFDH01000031.1| GENE 42 80515 - 80958 509 147 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_0526 NR:ns ## KEGG: GYMC10_0526 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 145 1 142 144 119 43.0 5e-26 MKIRLVLAVLTVLMLSGCSLLDGVSSTLNYGEEAKTYLQEAAAFAENLPAAAQEAVTDPQ AGEKVKKELEAMRENISSFNGLDAPGFAEDLHKQIVGYNETMLGTINGHLEQLNGQVLDY KSLLQSPVIQQVNEMKQLTEKIQNLGQ >gi|333607711|gb|AFDH01000031.1| GENE 43 81567 - 81923 364 118 aa, chain - ## HITS:1 COG:SMa1732 KEGG:ns NR:ns ## COG: SMa1732 COG2146 # Protein_GI_number: 16263406 # Func_class: P Inorganic ion transport and metabolism; R General function prediction only # Function: Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases # Organism: Sinorhizobium meliloti # 11 108 12 109 117 93 39.0 7e-20 MAVHEVLNVKDVPEGGHVRVEVEGREICIYRIGGEFYALHNYCPHQGAPMCAGLVSGTNL PSDVYEYDYSRQGEIVRCPWHGWEFDIKTGKSLFSDRTRVKKYELEIKDGRIGIVLGK >gi|333607711|gb|AFDH01000031.1| GENE 44 81941 - 83005 1027 354 aa, chain - ## HITS:1 COG:SMa1734 KEGG:ns NR:ns ## COG: SMa1734 COG2159 # Protein_GI_number: 16263407 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase of the TIM-barrel fold # Organism: Sinorhizobium meliloti # 1 351 1 354 366 258 40.0 2e-68 MAAAEKLKVIDTDVHNEQNDSALIPYLPEPWKSRVATTGIGYSGSGYYSPIGVMKKDSIP PGGGKAGSDPDFMIKQLIEGYNVEYAVLTGVVYNISTTHDPDYAAAVCSAYNDFLIAEWL GKHKAFKGAMAVSTLDPQLAAREIDRVGDHPDIVEVIISSAARWPLGHRFYHPIYEAAER HGLPVAIHPGAEGGGSSTAPTAAGYPARYIEWHTCLSQMFMAHLVSLVCEGVFAKFPGLK VVLVEGGIAWLPPLMWRLDKNYKALRSTVPWLTKMPSQYIAEHCFLTTQPIEEPDNPQHL VDLFNMFDAENMILYSSDYPHWDFDAPDMILRKLKPEARRKIFYENAKKLYNLS >gi|333607711|gb|AFDH01000031.1| GENE 45 83055 - 84617 1879 520 aa, chain - ## HITS:1 COG:AGl3560 KEGG:ns NR:ns ## COG: AGl3560 COG1653 # Protein_GI_number: 15891902 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 2 517 6 518 522 109 22.0 2e-23 MKKRPFAVILTVVLLAGVVAAGCSSKDQGASPGEGGGSDAKKPVKFSWLAYDRVEGKVRQ DWEIFKEIEKKTGVSVDFQIVSQEGLTEKRQIMIATNSVTDFIQVSTQEGREHGPDKVFL NLKDYLDKAPNLKAFYEKYPEAKAVASGADGGIYTVPVIEGDAEGKGFNFIWYTRKDLMD KYGLKPPTNLDEFYQFLKAYKEKEPNSYPLIPNAIVGDTGLYTVFGRAFTGIQGFFNIDP TTDKYAFAPYHKGYKDSLVFLNKLYTEKLLDPEYSLLTQAQWEERILKGKSLVTYFWKAD LESLTDKGRKAGTSAFELDAIPQFAADGIKNYQFSRPVIGAVGRAISAKVKDKERAVQFL DYLVSEEGSNYLSLGIEGKTYTMENGKPVYMKEFGASPFNTLRKDWGVWYDLITLDNAKS REVWERGLSDKSKDINKRYEPFIVPSPKQIVKTQEELELEKSKLNNLNKFLEQKLTEFVT GKTPINDTTYQQFLDQVKKMGADDLLNMYNTAYTRTYGKK >gi|333607711|gb|AFDH01000031.1| GENE 46 84834 - 85694 1162 286 aa, chain - ## HITS:1 COG:BH0481 KEGG:ns NR:ns ## COG: BH0481 COG0395 # Protein_GI_number: 15613044 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Bacillus halodurans # 6 286 6 293 293 228 43.0 1e-59 MKIKTSLASRVFDTLNIVLMLLLVIVMIYPMVYVFSASISNNALVASGEVLLLPKQITLV AYERLITNPDLWISYWNTIRYTVLHVALTLIVTAAMAYPLSKKWLPGRRSILLLAAFTLL FSGGMIPTFLVVQKLGMLDTIWAIVLPSLISTWYLFIMRTFFEALPEELEDAATIDGCSS LQVLLRIVLPLSMPVMATIGLFTAVNQWNAFFDALIYLNDRSMYPLQIMLRNILIAGTSV QGEGDLNHLETLKYAMIMIATLPILCVYPFIQKYFVQGSMIGGIKG >gi|333607711|gb|AFDH01000031.1| GENE 47 85708 - 86628 1183 306 aa, chain - ## HITS:1 COG:AGl3564 KEGG:ns NR:ns ## COG: AGl3564 COG4209 # Protein_GI_number: 15891904 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type polysaccharide transport system, permease component # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 11 306 16 309 309 272 46.0 5e-73 MTKSARFWYLVRKHKALYLLMLPGILYYIIFKYVPMYGIIIAFQDYSIGRGILESKFVGL KHFIEFFYVTPDSWKLIRNTVMLNVYDLLFHFPAPIVLAILFHELRNKWFKGFVQSVSYM PHFLSTVVIAGILVTFLSPTTGVVNHFLVKVFGMEPVMFLGIPEWFRTIYVSSEIWQKIG WGTILYLAAIAGIDPTLYEAAKMDGANRFQQIRHITLVGMLPVMIVLFVLTLGHFMETGF QKILLLYNSMNYETSDVINTFVYRRGILDSDFSFATAVGLFQSIIGLILVVTANRIVRKY SETSLW >gi|333607711|gb|AFDH01000031.1| GENE 48 86817 - 89102 2260 761 aa, chain - ## HITS:1 COG:BS_ytdP KEGG:ns NR:ns ## COG: BS_ytdP COG2207 # Protein_GI_number: 16080067 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Bacillus subtilis # 225 757 223 766 772 110 23.0 1e-23 MIPIPRPRSFRIALFWRHFANYFVVILIPVIVACTLAHFLVVSLIEKDAEKLNRVIMSRF SEQTDTAFNSLKTNMINMLSTSNIRSLLKEAGDLSGENPQRMELIHALREQLIKLQSDEL VTKAYLVFVHHDLVIDVDTYTDKSYYFDFRYPMGAEEKAAYLAKFTNKKMMEFTEPKPDG SALSALMSYPFNTNVPEVYLVVDVSRDKLQRLINIRENWVAGTAILGSRGEIISSNGVVS DGISRIPSLLADASGESKFLITEDKAISLVKSGFDDTSYYLSLVDLPTLMKPAHLTRLIS WIFLAFFIVVGSFVSYYLSRRMYRPILEIKEGLKSHGSAQALQMRSDGNDYDVIKRFSQL IISENKQLNQRVTGMFPIVQEHFVTKILLGEYRDALSIETYAGEIGFTYTKKAARTVLGI ALHYDPDVYGRLSETSKSFLTAELKERILQLVPSTIWLCGIKSDLLVCVIQKDPFLSRSP EEEANLIRAALQLYGSYFKATIGIGRTVYGIEELHLSYEQAVSVLQRRGLSAGVEICSGQ SAPDSTQCDTFLSVQEVGRILNRCKTRDYDKLLQSAYETVEEAVRKNATAVQIKYLCTDI LNTWVRAAETDRKDFNVPFYAGLFDKINACMTLEDVKRCFLEFHELLFQPAKPDERACKF TDILAYIHEHYDEELSIEQFANSMNMSVGHFSRTFKEEVGEKYVEYIAKYRLVKAKELLL QTDLKMDDIAEKVGYWGRNSFIRMFRKYEGITPAKYRTIHQ >gi|333607711|gb|AFDH01000031.1| GENE 49 89425 - 89862 572 145 aa, chain - ## HITS:1 COG:no KEGG:GYMC61_2954 NR:ns ## KEGG: GYMC61_2954 # Name: not_defined # Def: GCN5-related N-acetyltransferase # Organism: Geobacillus_Y412MC61 # Pathway: not_defined # 1 143 1 143 145 171 58.0 1e-41 MEIRKPIPEEIQQIRRLSPQALAEGTLGNAEPNRDKVRQLVDPLLKKGCYYLIAAEEKQL AGWVLIGESKDSFTDRIIGFVYELYVLEPFRGRGISRKLMQEAVEQLKSLGYPEVRLSVY AGNHALHLYESLGFAPRTITMTLPL >gi|333607711|gb|AFDH01000031.1| GENE 50 89954 - 90487 578 177 aa, chain - ## HITS:1 COG:DRA0014 KEGG:ns NR:ns ## COG: DRA0014 COG0529 # Protein_GI_number: 15807686 # Func_class: P Inorganic ion transport and metabolism # Function: Adenylylsulfate kinase and related kinases # Organism: Deinococcus radiodurans # 11 173 23 185 192 187 59.0 1e-47 MTHTRNKKVPAGLAYWLTGLSGSGKTTTAKAFAAELAARGHAVECLDGDELRRQVGTGLG FSREDRMENVRRAVYISGLLNRNGVTTVVSLISPYREMRAYARENLPRFIEVFVDCPLEE CERRDVKGLYAKARAGEIPAFTGISDPYEAPENPELVIRTDGDTLEHNVLKLLDFYG >gi|333607711|gb|AFDH01000031.1| GENE 51 90471 - 91388 814 305 aa, chain - ## HITS:1 COG:no KEGG:PPE_02624 NR:ns ## KEGG: PPE_02624 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 1 281 1 281 304 380 60.0 1e-104 MKAALYYRGSLSSCNYDCPYCPFSKNKDSAATLAKDRRQVEAFTDWVENQGAEGHRLSVF FNPYGEGLTHRWYKEAMVRLSHMEHVDKVAIQTNLSAGLAWTGELDPKKTAFWVTYHPGQ TTEEKFLGQVLQLYNRGIPFSVGSVGVKSAFGRLESLRRSLPSDVYMWVNAFKDKRDYYT DEDRAFLRGLDPLFDLNAEDYESRGRACGTGHDVFYVQGPGIVKRCYKDRRVIGHLYRDG LDALSQPRPCGMDFCDCYIGYIHMPDLQLRGRYGDGLLERIAGAGSQSQMPRVYEEGVES CDAHA >gi|333607711|gb|AFDH01000031.1| GENE 52 91385 - 92779 1148 464 aa, chain - ## HITS:1 COG:STM4012 KEGG:ns NR:ns ## COG: STM4012 COG0635 # Protein_GI_number: 16767277 # Func_class: H Coenzyme transport and metabolism # Function: Coproporphyrinogen III oxidase and related Fe-S oxidoreductases # Organism: Salmonella typhimurium LT2 # 31 453 7 404 413 289 40.0 9e-78 MSSSQLGNQPVPAAEEMSVSAWEENLRSAPYRSYLYSYPHKTAYRELDRKIPLQELWADE PAETFFLYMHIPFCGARCGFCNLFTLPDKRTGAHEQYVDALERQARQWAPHVGHKKFARF AVGGGTPTLLEPALLDRVFRIAEDVMGLDSGEASISVETSPETVTAERLDILQAHRVDRV SMGIQSFVEAEAAAIYRPQMPLVVEKALEQLKRYQFPILNLDLIYGLPGQTVDTWLYSLE RALAYEPEEIFIYPLYTREHTIVKPEEIRQRGADIRMACYTAARDRLLAAGYTQYSMRRF ARASASSPKTLLPYGCQEEGMVGLGCGARSYTHSVHYATRYAVSRSATAGIIADYVAAER HDLVDYGFILNEAERKRRFILKALLHREGLELASYARRFGTEALEDHPELNRLTETRLAE RVPQTGTGGGCFRLTDDGIALSDSIGDWFISPETRTLMEGYTFA >gi|333607711|gb|AFDH01000031.1| GENE 53 92806 - 93588 824 260 aa, chain - ## HITS:1 COG:no KEGG:PPE_02626 NR:ns ## KEGG: PPE_02626 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 2 260 45 302 302 470 81.0 1e-131 MNMNEIVGTHDILMITLDTLRYDAAVLEEANCPNLCGGASWEKRHTPGSFTYAAHHAFFG GFLPTPATTDKSQHIRLFHSKNTGLKTHPHTWLFDTPDLVSGLQEEGYRTICIGGVIFFT KKVPLARVLPGYFRESYWRMTFGVTNPRSTEHQVNHALKLLERTEQSEKLFMFLNVSAIH GPNHYFLPGAKKDSVESQRAALRYVDGQLGRLFEAMRERERPVFCLAFSDHGTCYGEDGY EGHRLAHEAVWNVPYREFIL >gi|333607711|gb|AFDH01000031.1| GENE 54 93633 - 94934 1158 433 aa, chain - ## HITS:1 COG:no KEGG:PPE_02627 NR:ns ## KEGG: PPE_02627 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 2 405 14 436 446 355 47.0 3e-96 MILIGNPDNRRTAGLQNARAKLGLPPAVVLPYAGLLDGSASLAQAASLAGAASQRAGEPA PLLRLDAPGELFAVERGLIALGAPDHEEAAHGDRLLPFGRRSDPQPLSVRSALALAEQEG RQYHPSQWFRGFARLLARLRREAEELWPQPQWTNAPEDIAGMFDKRQTHRILSAAGVPVP RLLAPPEEIADCEALRALMLSRRVHRVFVKLASGSGACGVVAYRINPRTGAEQAVTTVGV ENYGARAPVFYNAMKLRRYTDPSAIGQVLSWLLRHGAHVEQWIAKASYGDRTFDIRQLVV AGEACHSIARVSRTPITNLHLRSERVSVDDLGLAPGIRAGAAACAVKALAAFPRSLAAGV DVLLDNASHAPYILDMNPFGDLLYRVVHKGMDPYEWQMSRLASGSAEASAVSGAPEACGC AGLTGSAGTGASG >gi|333607711|gb|AFDH01000031.1| GENE 55 94952 - 95812 1056 286 aa, chain - ## HITS:1 COG:no KEGG:PPE_02628 NR:ns ## KEGG: PPE_02628 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 8 286 2 280 280 353 64.0 4e-96 MGGTVMSEVKLSIDYDQYEAGKKMKDLLEELADSPQSGELTSLIIGDWGGAYENDSEETV ETLVALKERFPKLTSLFIGDMGFEECEVSWIMQTNLAPLLEAYPALRSFTIKGSTGLDLN PARHENLEELTIICGGLGKDVIHQIYEGSFPRLKKLELYLGVDEYGFDGSLEDVLKLTEP GKFPELTYLGLKNSEIQDELAIALADAPILDQLHTLDMSDGTLSDTGAEALLNSERVKKL KYLDLSHHYMSDEMVSRWKSSGLNVNTDDQQDMDEDDDYRYPSLTE >gi|333607711|gb|AFDH01000031.1| GENE 56 95861 - 96361 70 166 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MDALHHGSESTSSSEAFLNAVSPQIVVISQTSFQSPNLKERLEKKNANVYSTGLNGNILL TSDGSKMEVLTEKDGLRLRKANRNITGSPRSRCLSVRLPSLDPAVHSIAVHSARRFFYEY IHGKKTLSIAQNPHPVRLPYETDPEKRIRNKAEGVSGCPEMFASLF >gi|333607711|gb|AFDH01000031.1| GENE 57 96680 - 97930 1199 416 aa, chain - ## HITS:1 COG:STM2142 KEGG:ns NR:ns ## COG: STM2142 COG0477 # Protein_GI_number: 16765471 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Salmonella typhimurium LT2 # 1 395 1 402 423 192 34.0 1e-48 MKTTIVPRLLIMMFLQYFVQGAWNMTLGLVLSTSGLSSIIGTSYALLGIATILSPLFIGM VADRFIASQKIMGILHIVNACVMLAIPSQIQSGNATMFLVLIFIVGVLFYPTTGLSNSIS FRHIHGAKTFPVIRVFGTFGFMVVGFLLGQMGFSGSIMTFKIAAISAIVLGIYCFTLPNT PAAGKGKKFLMKDLLCLDALALFKDKNFTVFMVCTIFLMIPKTAYSAYVPVFLGALGFNN AATIMQIGIATEVIFMFLLSLFLFKFGFKKIILWGAITWVLRSLLFSFAAVDAGILVIVI ALALQGICWDFFFTAGDIYVDNKADVTIKAQAQSLKFMISNGLGLLFASSVTGYIFNHTV VDQGAAALKQWQQFWIYPAVVAAVVALVFFLLFKDKGMIFQKKNAEEGAVSELKTV >gi|333607711|gb|AFDH01000031.1| GENE 58 97946 - 98764 293 272 aa, chain - ## HITS:1 COG:ECs5075 KEGG:ns NR:ns ## COG: ECs5075 COG1235 # Protein_GI_number: 15834329 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily I # Organism: Escherichia coli O157:H7 # 7 268 9 247 252 70 24.0 3e-12 MKVHFLGSAASEGIPNPFCKCEVCEKTRSEKGKNIRTRSAAIVDDTMQIDFPPEYSYQVM RDDVDVTRISELLFTHTHPDHFNAGDLFSRMEGYGHHVTHPLHIFGNDRAVNGCLDVLSG YSPQRFQFTRLIPFVTVESSGARITPLLANHAKWETCLIYFIEKEGKTLLYGHDSGWFPE LTWSWLADKHIDLTVLECTHGYNQNPHSDGHMSIETVLETQKRLLDSGIHSASSQIIVSH LSHNSGFMHNELVDIFKPHGIEVAYDGLIKFI >gi|333607711|gb|AFDH01000031.1| GENE 59 98803 - 99327 244 174 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764775|ref|ZP_02171829.1| ribosomal protein L16 [Bacillus selenitireducens MLS10] # 15 144 14 148 236 98 37 2e-19 MDPIQYGQMFGHWEMYVRILASALMGLFIGWDRSHKHKPAGIKTYTYTSVACTLITIISI STASHYNEAGQLMRADPMRLTAQIVSGLGFIGAGVILKDGERVKGLTSAAMIFFSGGVGI GIGAGYYGIVMFSVVLTFFLARISRFLPMNNSGDDRKSRSGNDAARKQQEKECI >gi|333607711|gb|AFDH01000031.1| GENE 60 99645 - 101816 958 723 aa, chain + ## HITS:1 COG:SPy1817 KEGG:ns NR:ns ## COG: SPy1817 COG1609 # Protein_GI_number: 15675647 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 4 183 5 180 321 80 31.0 2e-14 MPTIKDIAKAAGVSHGTVSNVLNGRGNVSLEKINLVEEAARKMGYQIHARAKSLREGSTT TVSLILPNISSDSYNKLYIAIHSTLLRAGYTTNLYLTQDQKENEQALLQEIAANRDCAVI TVSCVDDAMEYYDLLGIPRENIIFVYRKLQNAMKFASFDAGTSGRTIAQKIKEKAHQKIG IFTDLLRYSCDRDFRNAIMEELSPLDLRIHTIAAAQSTAYNHAFDFFAGDAFDCIVTSDL ERARYIKNAHFLGSTGQSPEIYSLADSEFLTEDFINKYHINYQWLGKEIAETILRHETTD QRDGAPIIGLNRGFMFDDQALGRPTANKTLNILTIPSPTTDALKKLAPHFKKTTGIDLRL AVYSFEEIYDILSDIDNHKHYDIIRVDMAGLSWFAGQTLKPLSPEMQELLTNYPSQLIDR YAYVNEIPYAVPFDPSIQMLFYRKDIFEDTKVRRMFYEQYKAELRTPSDFEAFNRISAFF SRASNPESPLSHGSCVTTGNSEIIASEFLVRYYAEGGHLIQEDNKLALSKEIAMDAFHSY IDHLSIARNLPAKWWDESISLFEDGQIAMLIVYMNLFSNIAHSEISPLVGFAEVPGQQPL LGGGSLGVSKYCRKDDEVSAFFRWFYDHDIAEQVTLLGGASVNDFIYSNQNVMDQYPWLK FAKDLEYRGVRESAFPTGHNFNLRKVEKIIGLGVKNVMNQMMSIEEAIDYINARLSEKEF LAL >gi|333607711|gb|AFDH01000031.1| GENE 61 102064 - 102252 70 62 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSFSLFLQPCSKALDYLSAHMVDAIITDIRMRKMDGLTFIRKVRQHHKHLPILIISGYGE FQ >gi|333607711|gb|AFDH01000031.1| GENE 62 102282 - 103913 1958 543 aa, chain - ## HITS:1 COG:SP1796 KEGG:ns NR:ns ## COG: SP1796 COG1653 # Protein_GI_number: 15901625 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Streptococcus pneumoniae TIGR4 # 7 543 9 537 538 198 30.0 2e-50 MRKMRWTAVTLTVAMAVSVLSACSGGNESAGSADGKDSKKEVANLNPTGMPIAKEPVSLT FFTGKAATNGNNFEETLVWKEYAKMTNMNIKFQLVPFENLTEKRNLALAGGDYPDAFYSA RVPSSDLMKYGAQGTFVKLNDLIDQYAPNFKKLMEKYPDLKKGLTMPDGNIYSFPSFYSP DFLPMLIGTPLWVKQDWLDKLGMKEPATTEEFYQYLKKIKETDLNGNGQADEIPYAGEGI NPLIEQLRGAWGFGNRGLGHKFVDVDLKTNDLRFFRTDPGYKEVIEYMRKLYTEGLIDKE IFTIKTAALFAKGQKGVFGATINPNPKTQMNQTGYFGLGALKGPHGDQLYSHVKVPAVWP GAFVITDKNKNPEATVRWIDHFYGDEGATFYFMGIEGQTYKKTADGKLEFVEEITKNPNG LTMDQALAKYITWLGGSYPGYVQQKYFKGSETLPESVETGKKAEPHAVKELWNNFNFTEE ETEFRSTVGKDMETYIGEMEAKFITGSQPMSEWDKYVATVQKMGVDEYMKIYKQSYERYK SSK >gi|333607711|gb|AFDH01000031.1| GENE 63 104002 - 104889 1217 295 aa, chain - ## HITS:1 COG:SP1797 KEGG:ns NR:ns ## COG: SP1797 COG0395 # Protein_GI_number: 15901626 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 19 295 30 305 305 244 47.0 1e-64 MNTIQSTREKAFDWAVYALLSLVSLIVLYPLVFVLVASFSSPEAVMRGEVWLWPKDITWM GYTKIFQNNEILTGYLNTIVYTVVGTAINLILSVAAAYPLSRKDFAGRNAISALMVFTMF FSGGMVPSYLLVKNLGMLNTMWALIIPGAVSVYNIIIMRTFFQSSIPGEMQEAASIDGCS NLGILWKIVLPLSMPIIAVMILFYSVGHWNSYFSGLMYLTDRDKYPLQLFLREILIQGQM QEMLGVGDDSHARNVMEGEAIKYAVVIVANLPVLMLYPFLQRYFVKGVMIGSVKG >gi|333607711|gb|AFDH01000031.1| GENE 64 104906 - 105889 997 327 aa, chain - ## HITS:1 COG:AGl3564 KEGG:ns NR:ns ## COG: AGl3564 COG4209 # Protein_GI_number: 15891904 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type polysaccharide transport system, permease component # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 34 327 16 309 309 283 49.0 3e-76 MSQEASSSQTAAPASAPAASAVRKPKRSAVFKRVRRNWDLYLLILPVLAFFLVFEYFPMY GVQIAFKNFIATKGIWGSPWVGFKHFERFFESYYFWRLLTNTLGIGLYQLVVGFPIPIIL ALMINEVRSKKFSKFVQTVTYAPHFLSTVVLVGMVFIFLSPQTGLLNMVVTWFRGEPVNF LTDPAWFKSVYVLSGVWQQMGWSSIIYLAALTGIDPQLHEAARVDGASRWQRILHINLPG IMPTVTILLILNMGSLLGVGFEKVYLMQNSLNMQASDVISTHVYQKGIIDGQYSYSAAVG LFNSVINFILLLTVNRIARKVSSTSLW >gi|333607711|gb|AFDH01000031.1| GENE 65 106086 - 108641 2348 851 aa, chain + ## HITS:1 COG:BH2728 KEGG:ns NR:ns ## COG: BH2728 COG4753 # Protein_GI_number: 15615291 # Func_class: T Signal transduction mechanisms # Function: Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain # Organism: Bacillus halodurans # 719 842 380 502 510 83 34.0 2e-15 MKRVLLNRHSLVYKLFFSFLGILLLFSVFNGVSVYFFNKSMQNEIIQYNRLMLKNTAERY ETHFERIKTMLFDLYSNEAVVAFNRQLLTKAEPDIEYWKASEVLKTVRAQAYNPMFYLNN LLVYYDSHSLIVEKEGSVNAPMLFERFYLSADYPLAYWKEQFARSGNYALHPQSSFNVTT LNSSVDVELIPFSFRMPGSNYQIVALLDARALQEAFYGPGDSREFMILREDGSLLYRSSS AFGAGDIPSFGPEGAGYMKAGDTYFFAEKDPLTRLTYVTALPYANITAKVRNASLTLLLI FAAALLLGIAASLFFSRRIHRPVKQMLSSIASRDPVRPKSAIREFDLIHQNLHELMQEKE AVRKELLGKKSLLTSFGYINKLKAITSDINDWQDIAEMDDPFCLVLVQLHFKEGTVPESH SRPDRIAYYIREYINVVMTEHLPHSHTFQIDTNQILTLVKGGDEPEKLREALEKLKPILD RDKAYFLATLAVGSVHKGSGQFNAAYRQAQEMAQQARPLDECQIIRSHRVSPPYALNAAQ EQELFRHIQAGNLAHCVSLTERILEQMHKKDAGLAQYRQIAESILLRATRAVEPYGRAAA AAVAARGKDADPGPESPAANSSAHRSAGTPPGASAGERAAAGHIPRTLPGNMAGNGDSSS GAGPAAAQAACTCGEDIGTPCASACACGGACGPAGGLSFQERHQRRLRSCYTPDQFGRFY AQLFKEAAGIIAAGKEERDSVIEFVMNELENKFADDISLDLLADKLNLSAAYLSVYIKEK TGVNFSEQLNAIRIRRAKELLGGTGLSVQEISVRIGYRNVTSFNRMFKKMTGLPPGEYRK RHVIGGELGGL >gi|333607711|gb|AFDH01000031.1| GENE 66 108976 - 109518 386 180 aa, chain + ## HITS:1 COG:mlr0163 KEGG:ns NR:ns ## COG: mlr0163 COG3797 # Protein_GI_number: 13470453 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Mesorhizobium loti # 4 176 6 177 184 98 33.0 5e-21 MTTYLALLRGINVSGQKLIKMAELKNMFEAMGFLAVKTYIQSGNVLFRSDLANSKEALRE RIEDEIAAVFGFQVSVIIRTAEEWEQIIRDCPYDAADLKEGESIYVTLLADRPAPEDLGR VPEPDPRLEEYRVVGREVYLLFHQSIRDSKLAASLHKLKTPATTRNWNTMNKLLSLTRSL >gi|333607711|gb|AFDH01000031.1| GENE 67 109770 - 110096 388 108 aa, chain - ## HITS:1 COG:BS_yetG KEGG:ns NR:ns ## COG: BS_yetG COG2329 # Protein_GI_number: 16077782 # Func_class: R General function prediction only # Function: Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides # Organism: Bacillus subtilis # 1 108 18 125 125 108 50.0 2e-24 MFIQTRSVVVEKGNAEQVVERFSKEGAIDSREGLIDVSVMVNRSKKENEEVLILIRWESE EAWKNWEKSEEHIQGHREKRGQPKPEYIISTSVNSYELKKRKIGKAGQ >gi|333607711|gb|AFDH01000031.1| GENE 68 110158 - 110556 300 132 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_2067 NR:ns ## KEGG: Pjdr2_2067 # Name: not_defined # Def: GCN5-related N-acetyltransferase # Organism: Paenibacillus # Pathway: not_defined # 1 128 1 128 131 182 63.0 3e-45 MNDEVKINLPIQDFEVPDLRQSVGWDRRDSDFPALLGRCNFWAGVRNEAHKLIAFGYVAG TGLQHGYMEDIMVHPDYHGGGIGKALVSRLLEEADRTGLEIVTVTFAEAHASFYEKSGFK PCPGGLWKSGSN >gi|333607711|gb|AFDH01000031.1| GENE 69 110757 - 111851 804 364 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_6077 NR:ns ## KEGG: Pjdr2_6077 # Name: not_defined # Def: spore germination protein # Organism: Paenibacillus # Pathway: not_defined # 1 357 1 356 364 343 49.0 7e-93 MALSGGKISFLQLVMLLMLVNGLMNHVILNPIVLDASGRDAWLVPIFSALFLLPWCLLLV YFMKKSGQQKLQPWLAQRTHPAVSWILIVPLYIQIYLIGMTTLLQTSIWTVTNYLPATPR FALSLTLIVVCAYCAISGLRTIAISAGVLLPFVVVLGYFVMIANMPNKEYDRLFPMLEFG MKPVMDGMLYAGSGFMEFVLILALQQHLKTRIKSWQILILALLFIHIMLGPIVGAITEFG PEEAAKQTESPYEQWRLVKVGDSIEHVDFFSVFQWLAGTMVRISLSLFLLGDMLSFSLAK YRNRFIACMALSYLLITLMPITQQNLYEFMHRYYFHLSLIVILGSTLIWTLISVTTKTGK EGTS >gi|333607711|gb|AFDH01000031.1| GENE 70 111851 - 113335 1063 494 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_6076 NR:ns ## KEGG: Pjdr2_6076 # Name: not_defined # Def: GerA spore germination protein # Organism: Paenibacillus # Pathway: not_defined # 11 485 10 483 486 487 52.0 1e-136 MVQSSGNAGIWTAGQLKHLFAQSEDVVLLTHTFGENGANAAEVLLLYGEATSNSQLIGEM VLPGLEMAFDKDQGFPTAGTVLSSCLPLLPFTGPITAETISEILFEGKLLLVFPHLRSAF LMNISSLPERKPEESNTELSIKGPRDGFVENLSVSIALIRKRIRSHTLCCEKFVIGRRTR TKVALMYVRDIISPEVLLEVRSRLESIDVDGIYSISQIEEMVTDQKFSLMPLMDYTGRPD FAVSALLNGRFVLIVDGNPMVLIAPSTMAMQIKSPEDLHNNFYYTSFSRLVRVLSIFLCV LLPGFWVSLAAFHQDQIPFRLLATITIARLGLPFSGQFELLILLILLEVFREAGIRLPSA IGQVLTVVGGLIIGDAAIRAGLVSPSVVVVGAITAVSNATLVNQNLSSAVSLLRFFLFFL SCILGMFGLIMGIIMVTVYLSKLRSFGVPYLSPFSPPIYSNWVPAFMRLPWTLMTGRPKN LHTQDKNHKKEDNP >gi|333607711|gb|AFDH01000031.1| GENE 71 113332 - 114468 1005 378 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_6075 NR:ns ## KEGG: Pjdr2_6075 # Name: not_defined # Def: germination protein, Ger(X)C family # Organism: Paenibacillus # Pathway: not_defined # 15 376 17 379 382 298 41.0 3e-79 MSIVKRSAWLGILLLLTGCWNSKDLQTMAYATALGIDYADGKYITYVQILNFSNIAKSEN NQVGTRIPIWVGRGEGKTVSESLTSIYSTSQLRLFWGHVKAVIVSEALMKKGLPDVYDML NRYREIRYNILFYGTNKPLDKLLSLTSMLNFSPIESLLTRPEQYFSQKSLILPVYGYKFI ADLNEAGNSTMLPSLTANSVVWEEDQSKVSLYEINGAYFFNDTKYAAWLSQEDLKGARWL QTRLERTPLNAPKEHPIAALILEGPKYTVDAHVVNEKIRFTISLKIHAFIDEFREHATEA EIETAAETEIKNEILMSFHKGVNKRVDVLKLSETLYRKHPDVWKTHFKGKEFPLDMDSIE KIDVKVDITHSGKYKERK >gi|333607711|gb|AFDH01000031.1| GENE 72 114481 - 114849 346 122 aa, chain - ## HITS:1 COG:no KEGG:Haur_2943 NR:ns ## KEGG: Haur_2943 # Name: not_defined # Def: hypothetical protein # Organism: H.aurantiacus # Pathway: not_defined # 7 118 66 176 181 102 45.0 6e-21 MYTLSGEVGEEDKRLLFGPAASDTVIAIESAWLDRLRQTVLYRYTFDERDFRLLDATAGY YTAERPVTPLSVELVGDLLDKLAATGAELRIVPNLNPLRDALVASSVSLFSVIRFRNARP PV >gi|333607711|gb|AFDH01000031.1| GENE 73 115023 - 115811 785 262 aa, chain - ## HITS:1 COG:DR0066 KEGG:ns NR:ns ## COG: DR0066 COG3231 # Protein_GI_number: 15805107 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Aminoglycoside phosphotransferase # Organism: Deinococcus radiodurans # 56 262 57 263 263 160 42.0 2e-39 MNESTRNWPEELLGLLGQTELTVNKIGYSGDHVYHVKEYRGAPAFLKIAPSVWWRTLRPE IEALAWLDGKLPVPKILYTAEHGGMDYLLMEALAGKDGSHETIQAKPEFFVKLYAESLRR IHSLDIRECPLSNGLEKKLRDAKRIVDESLVDPTDIKEEYDCTPEELYRLLLASKPVTED LVFAHGDYCAPNLIVDGEKLTGFIDLGRAGVADRYQDISLAIRSLRHDYGDDRYKALFLE LYGLDGLDEDKVKYYIRLDEFF >gi|333607711|gb|AFDH01000031.1| GENE 74 115792 - 115956 112 54 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNAQAFFANLPELYTERALLRKSGPEDEAGLAGGIKIRKQPNFKEELTNERKYA >gi|333607711|gb|AFDH01000031.1| GENE 75 116180 - 116389 122 69 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLCSAVCLIVATIRAVVMKKAKADAVYSNTALIPLLCARITATSLSQNYTQSLFPEANDG TGRATETVY >gi|333607711|gb|AFDH01000031.1| GENE 76 116637 - 121514 4942 1625 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_1663 NR:ns ## KEGG: GYMC10_1663 # Name: not_defined # Def: S-layer domain protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 40 1109 35 1110 1549 1233 59.0 0 MKSLLRKWNGMMIIALVISLLTPAWGKVSAQSLGQESGGVQPQAAGVTDDVYVLSQDGTF RLPVGHINVNVDAPPQKTNYVALFTSGAQVTNSAETDKVFVKKTNTAIAVDKHDQVIRVI GPTAVPPTGSTWEENQNLPVPEGGYVLLANDSSWGTSVTRKPLFEHYKTGDIVSLHKGGQ VVHAGDFLNPDPGLNLVTAPGTTVTSPDFTVSGQVIRYGSGQGISLTVNGTEAALKADGA FQSVVRLTAGTNAIPVKLLKDGREIVSSTVTVTYNDAQQPADLIEVEAAPIDITISIEGP RHAIGFVDQDITGIDDTVALFTNDWGPQITVPQFNVAVQVDAGNKVTKVVNPSIDGKTPA WTGPTDLEIPPGGYVLVAQDTSYASKNIKKYLATYFKVGDAIKLRKNGLAVPVKDLMGTG GPIARLTLDNYAMYTETKPSTELSGTITNMDDPSKIALTVNGTPLPFGPDGKFKTSYTLA EGINYLDLVVTKEGKEQDSKDLVVYSRPGFSTEKKVILWVDQAANARKFQTSDNVENFLR TAKENGVTSVVFDVKGVEGYVSYKKSTLTGRPYVSAIKAPEKAGSNPDLDLLQEFIRYSR ELGLDIHVAFNIFAEGSIASNEYALLNSHLDWEERVYNAADKGQIKRLRESAKQGAVAFV NPSNDEVRDFQLKTIEEVLQNYDVDGVVLDRARYDNESADFSDLTKAKFESFLGARGKQL QNWPDDVFTYAGNVRKDGPLIQDWWEFRSKTIKSFTSEVRQLADRVKAEKGKKIEVSAYV GSWFESYYLNGVHWGSTEFRYDERLRMKDESVYTPGYYESGYVKNLDFIMIGAYQTTAPE IEHYITLGNIVTNGEVPLYAGIALTNVQEPALQRDVFQAGLENTHGLMLFDASQVNWPVA GAALRNLVYVRDYQLGISLPDSPDSFLEGSYYNTNLIENNIGVLTDTFGYSTGNSRFGVE AVVDSSGKVTSVPNKTQAMTWNWGKPDETNSVIPKGGFVVSTLDASGIRTKRQLVANAYE SGDSVRAAALSGFLAYEGLRTSADSVTFRGKVDVLGPGKASVTVNGQEAALREDGTFQAD TAIRPGANPVVITVRVDGFKTNEKTVTIIGDEAAVKSLKLDRGTYSMNKGESLQLAVTAE YNNSSKDVTGQAAYDSLDPAVVSVDAAGRITALRAGSGTVQATYDGHIALARVSVQSGST GGGSDTGSGSGGGSAGGGGTSPSGPERTSVTETKGSDGRNLTLVSADAGVMEAEIAALQG KAAPVLSYEIPGREPAGIVSLPGTALRKAVAGSPGAILSVTSHLGAIELPAGLLEADLPA EGSFDLLVQIGQTSAGETADLAARAAKEGMQVQGMPVAFRVSLKTGSETKEIGGFGSYVR RTVNLPGAVDPDRATAVELDPASGELRFVPSRFESSGAAHRAVIRDRSGGTYAVVTSDVS FPDLASHWSRKDVEQLAAKRIVDGMGAGGFSPDEALTRAQFAALLTRALALDPAPAAADF TDIPGDAWYAGAVGAAVQARLADGFETGEFRPGEVLTREQMSVMLMRAVKLAGIRTEENS ASGALADFADRGDISGWATAAVSQAVDVGLLDGRGDGRFVPGGTATRAEGAAVLKRLLQT AGFVN >gi|333607711|gb|AFDH01000031.1| GENE 77 121626 - 123119 2001 497 aa, chain - ## HITS:1 COG:BH0482 KEGG:ns NR:ns ## COG: BH0482 COG1653 # Protein_GI_number: 15613045 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Bacillus halodurans # 55 490 65 506 512 114 24.0 4e-25 MLKKAALLLTVAALGVTTAACGGGKETQTGGTSPAPAGGAKPAMRQLMQYGNFDPNKEFT AKTISEKTGYTVNYEMLPAENPDEKLNLLMANKEEYDVMKLSAPQFEKLATSGALEPLDD LLEKYGPNIKAAIDPAAWESAKVNGKIYAIPETGSGLAVGEELVVRQDWMDELGLKTPTN TDELYTVLKTIKEKKNIAPLTGSKDSKESIIGDIGAAFGVTADWVNQNGTLVHQVETPAM KEFLTYMNKLYKEGLIDQEMPINTSAKAIEKFSSGKAAIFKQAYWNAGTTEKALKKNDPN AKTAIIPFLKDKSGKASTFVKANTTWFVTIPKVSKHKEDAVKFLDLKLKPDNFIEIAIGK QGEHHEIKDGKYYPILPKFNDELNNGSGFLTGVDYKKYPDYWQARVRKDPVLQAFFEQIN KNAEGIMVTDPLAKAPPIADISKSKQKLDKFQTDSMLKFISGSDPLSNYDQFLAKWKADG GDAMIKAANEWFKSAKK >gi|333607711|gb|AFDH01000031.1| GENE 78 123217 - 124140 1202 307 aa, chain - ## HITS:1 COG:BS_lplC KEGG:ns NR:ns ## COG: BS_lplC COG0395 # Protein_GI_number: 16077779 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Bacillus subtilis # 21 307 10 295 295 233 46.0 4e-61 MNTDAALPAVKPHKRRKPRTTWSEKMFHLINYTLFILFGVATLLPFLNLISKSLSDESAV ISGQVSLFPVGFQLSTYAYVLQDQMFLNSFKISILITVVGTLLSLFLTTITAYPLSKTRL RGRKWLLLVFIFTMLFSGGLIPMYLLMQNLNLVNTLPALFLPAMVNVYNMLIIKNYFEGL PESLEESAKMDGASNLRILFSIMLPLSMPVLATIGLFFAVYFWNDYFAAMIYITNPSLKP MQLFLKELLISSTGDFLRNNNLDSSMNTTPQSIQAASILLATLPILLVYPFLQKYFVKGV LVGSVKG >gi|333607711|gb|AFDH01000031.1| GENE 79 124157 - 125113 1034 318 aa, chain - ## HITS:1 COG:AGl3564 KEGG:ns NR:ns ## COG: AGl3564 COG4209 # Protein_GI_number: 15891904 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type polysaccharide transport system, permease component # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 15 318 6 309 309 278 47.0 1e-74 MRQPASEVNVSRSKQSYSRQLGSDIRKDWDLYLLLVPGILFVLLFKYTPMYGLVIAFKDF NIFDGMAASPWVGLEHFKKLFTSQEFGGVFVNTLIISLLKIVILFPLPIVVAILMNEMKN MLFKRTIQTVIYLPHFLSWVIVSGIFIDLLSTNGGLVNKVLISLGLEQIAFFMDSSVFRS VLVTSAGWKETGWGIIVYLAAFSTIDPQLYEAAKMDGAGRMKQIWHITLPGILPTILLMF ILRLGSVLEAGTEQILVMYNPTVYNVSDVIGTFVYRMGLGNQDYSFTTAVGLFESVIAFS LVITGNYLSRRYLQRGIW >gi|333607711|gb|AFDH01000031.1| GENE 80 125418 - 127016 1990 532 aa, chain - ## HITS:1 COG:BH1123 KEGG:ns NR:ns ## COG: BH1123 COG4753 # Protein_GI_number: 15613686 # Func_class: T Signal transduction mechanisms # Function: Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain # Organism: Bacillus halodurans # 3 530 4 522 526 155 24.0 1e-37 MNVMIVEDEVRLRTSLVNNIPWEDNGIEVIAQAASGTEALFLFERKKPDIVLLDVQMPEM DGLTLARKLREKDAFVKMIILSGHDNFGFAQKAIEAGVSQYLLKPAGDGEILEAVLSAAE QLRQELERWHSQSELQEKWSEHLPQLQSAFFQNLIGGKYALWEIRKISRDYLLDLDESMQ YAVAVADVDPLGPEESRYKSGDMPLLRFSLQCVAREFLQPHSCWVNTDASGYTLVLFAMP ADDSPNDVMLRVHAAVVKLLSQAKECLKVTCSAGISGGTGGLTEISKLYAQAYQALQDRI VYGADIAVPYRDKPAAGTSVPLSPGLEKTLEIALETGDADKAMDTLSELWDQAMEGTETA AGMHEALMYWTSLMIRLIHKQGWSVQDVVKDDYPYYRDVTMLSTKQQIRAWLERSVLHYS AYLQEQRKTTSHGVVKTILSIVEKEIDSDITLHSVADRLYVNSSYLSRLFKQETGVAFST YVLERKMDRAKAALLEGAKVYDAARLVGYRDVSYFTKVFRKYWGVTPGEMKP >gi|333607711|gb|AFDH01000031.1| GENE 81 127013 - 128833 1732 606 aa, chain - ## HITS:1 COG:BH3447 KEGG:ns NR:ns ## COG: BH3447 COG2972 # Protein_GI_number: 15616009 # Func_class: T Signal transduction mechanisms # Function: Predicted signal transduction protein with a C-terminal ATPase domain # Organism: Bacillus halodurans # 301 584 313 593 602 158 32.0 3e-38 MRDKFQRNIQVRLTCYFLLILLPLVLVSLFANERSQQILVEQAAERSRLALNSAMDYIDL TLQSVEELSTLISTDSELIGTLSRNGRELTPRAVMDFSQMMKQLSNMNSINHIAAQISIY HYPSTRMFSTNYGTRYLDKSQQEFMQSMTLRNGTGILYMLPGEIIYGSTTFGELMNSDSV TLVRSMDLYNPLREQNVLLVTLNKTRLLNLIKPLLPSPQTKIYLTNANNNLIAGISQEGE TRDKYLPSEPDMLSVTITSNTSNWKLTMMQPKSELYSKTEQVKLYTYGIITISILLALWI SWIVYTGIASPLQKLSHGIKRLGSGKLSIQLENRRRDEFGYLTEAFNQMAQQQKHLIEDH YEQELRLAKTELKFLQSQINPHFLYNTLDSIYWTAKNYEADEISEMVLNLSRFFRLSLNK GREVFSVEESFAHLHYYIRIQQIRFLENFEVQYRMEDETKGIPLLKLLLQPLVENAILHG MDGKEDGGRLVVSSRLEEGFLVLEVKDNGSGIPQERLAYIQEELGRLHRRKGKLYSLDEE GVDDLFGLRNVVSRIKLYYGGSAELSIDSSEGGGTCTALKLPLVRCREDFSPGADSMIDY KEETGT >gi|333607711|gb|AFDH01000031.1| GENE 82 128851 - 130347 1440 498 aa, chain - ## HITS:1 COG:BH1064 KEGG:ns NR:ns ## COG: BH1064 COG1653 # Protein_GI_number: 15613627 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Bacillus halodurans # 42 489 52 546 550 158 28.0 3e-38 MGALAAASAGCERAPEAARGGLIPPGSASPADSISIVTNTIGLSFPQGLDENNNPYLRYI EKNTGLNIKVTLPPQDVYPEKLNVIMASGNTPDLINYSDKVWMNDNARQNKLMPLDELID RYGKDLKEKIPKEAWDQVTVDGKIYAVPSLNEVKGLELMYVRKDWLDRLGLAPPVTLDDY YKVIRAFTLDDPDGNGLNDTIGLTFGDALARSAPFFGAFGVQLDQWADRYGELAYTSTLP ETKEALAFLRKLYREKLLDPEFPLNRNASMMDKVKNGKVGLFSATWYDTRGPIAANMQKD PRAVWIPLEYPTGPDGHSGVYATSLIRSYNVIPVGSTNPEGVIRYLNFIAGDGYKTLKLG FENEIWSMQNGKMITNFEEHDKHIYRGIYQAMADVPDKEISKMRLDSLGDFHLYDNLRRI EGHLIPNAFYGSPTPSMSKYYNIKGKELMEHFVRIIVGVEPLDSFEMAVERWRKEGGDDM TREVNEWYKKQGIPQGAR >gi|333607711|gb|AFDH01000031.1| GENE 83 130425 - 131534 973 369 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_6264 NR:ns ## KEGG: GYMC10_6264 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 5 367 4 367 368 391 54.0 1e-107 MEVKQAGKIDIARYDRNLQTDTMADEAAVWHDPRRAPFTISGFAWLETEGRYRRLPVRPD RKLPEAVDRLADCTAGGQIRFITDTAQLSVRVRLGGNAAMPHMTALGQCGFDCYIGEPGN QRYVATASFKPGDCEYNSRLYRFEEKRMRHITLNFPLYQGVEEVWIGTDEDALVEEPLPY ESPGRIIIYGTSITQGGCANRPGMSYPGILSRHINREFINLGFSGSGKGEPEVAKVIREI GNPALLVLDYEANTGEPENIRATLPVFIDLYREKHPEVPILVVSCIEFAAARFDPAVRKK LDDRRAIQRQTVEDRIAKGDSFITFFDGSALLGEDGDECTVDGIHPTDLGFKRMADGLLR VFNRCLRAE >gi|333607711|gb|AFDH01000031.1| GENE 84 131839 - 132384 221 181 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|228000081|ref|ZP_04047083.1| acetyltransferase, ribosomal protein N-acetylase [Brachyspira murdochii DSM 12563] # 17 179 4 165 166 89 30 1e-16 MIIADRPFNVNGLSYTIRSAADRDAEQLSRLRMQIDGETENMDREQGEAFIDALGFERLI QADSDSPRNLFLVAAVEDRVVAFSRCEGNHLIRFSHKVEFGVGVLKEFWGHGIGKNLLKT SIDWADSNGIKKMTLTVLETNEKAAQLYRKLGFEIEGVLKKDKILSDGSYYSTLVMGRFN N >gi|333607711|gb|AFDH01000031.1| GENE 85 132560 - 133204 654 214 aa, chain - ## HITS:1 COG:no KEGG:BCAH187_A1535 NR:ns ## KEGG: BCAH187_A1535 # Name: not_defined # Def: hypothetical protein # Organism: B.cereus_AH187 # Pathway: not_defined # 1 207 10 220 257 117 33.0 4e-25 MEDGRLEQFIRCPGCFYSGGNCQESEPWRESARTAADRIIREFYGIDASRRTADIILERL EMYLIGPDESGLVMEDYLRMKKNLAKYLILALFQEEKTEPPLFLFETLSVQVEELDLELV MHLHVGEWANGSYTLKRYYLDEDWCVVKAYLQLSLVFAYKAFGRLPGQIEAYNLLTGEAY RIRPKLDDLQASMDFLRLTDTLMREPKRGRIMLA >gi|333607711|gb|AFDH01000031.1| GENE 86 133228 - 133677 601 149 aa, chain - ## HITS:1 COG:BS_ykuN KEGG:ns NR:ns ## COG: BS_ykuN COG0716 # Protein_GI_number: 16078479 # Func_class: C Energy production and conversion # Function: Flavodoxins # Organism: Bacillus subtilis # 1 139 1 141 158 104 41.0 5e-23 MSTFIVVYASLTGNTEEMADAVVEGIKQAGGTVTVKDILDARAAELEAYDGIVLGAYTWG DGELPDEFLDFYEEMDELKLNGKIGAVFGSCDSSYAQYGAAVDLLTEKLQSLGCMMQEGL KIELCPSAPEREACREFGRQAVLRFQGAL >gi|333607711|gb|AFDH01000031.1| GENE 87 133962 - 134672 705 236 aa, chain - ## HITS:1 COG:BH2060 KEGG:ns NR:ns ## COG: BH2060 COG0500 # Protein_GI_number: 15614623 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Bacillus halodurans # 4 236 2 234 234 207 45.0 1e-53 MNSARLQRIRREEKAYHEQYFEEHDLYEKDSWLEEPDERVLEYLEKLRDGKPLKVLDLGC GVGRNSIPLARKLQPTGGKVVCVDLLDKALEQLEANSEEYGVQELIETGQADISEYEVPG NTFDYILAASSLEHVRSESALDKVLAGLAAGTKDGGINFILMNTNIREVDAETGEGRETL IELILTKEQALEKLRQAYSGWEELDVSHKPLDIEINRGETPVIMKTDCLSFAVRKR >gi|333607711|gb|AFDH01000031.1| GENE 88 134800 - 136314 1250 504 aa, chain - ## HITS:1 COG:BH0715 KEGG:ns NR:ns ## COG: BH0715 COG1680 # Protein_GI_number: 15613278 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Bacillus halodurans # 47 495 26 476 478 187 31.0 5e-47 MNLGAITKLAKTRKERKRIGARTLFAAAAALLIAVPEPAKAAESVSGKPDTTARIDAYME AAMSRLHIPGAALGIVKEDDTVYLQGYGTSGPDGAKATPQTAFVLGSTSKSITAAAVMQL AERGKIDLEAPVRRYLPDFKTADPERSDRIRVKDLLYQTSGFSKYDGVAALTQGDSTIGA HIGGLSNISLVRDPGTGFEYSNLNYNVLGGLVEKISGASYTAYVKDYLFEPLEMKNSFGS PQEAGEADMAAGYQSVFGFKAPTRQLAHTGTVPSGYLISTAEDMTHYLSAQMNGGRYKEK TVWSEKSNAALHKPEASIGGGASYAMGWTVKNGVLFHDGATENTYSFMVIHGDTGIILLL NTMDYLVPYDQIVMGIYGILQGEDAPVESLPNYIRTYVLADMAMAAVLALAVRSFYTLFR RKKRVKPTAGRIALSAAGIAGVHLLLPACILMLPKLLHAPWPVLMVFLPGLSQGLYFMAI LLVCTGLLKTAAVVRALRVRKMAQ >gi|333607711|gb|AFDH01000031.1| GENE 89 136688 - 139114 2420 808 aa, chain + ## HITS:1 COG:BS_yvgS KEGG:ns NR:ns ## COG: BS_yvgS COG3973 # Protein_GI_number: 16080398 # Func_class: R General function prediction only # Function: Superfamily I DNA and RNA helicases # Organism: Bacillus subtilis # 1 804 1 772 774 728 46.0 0 MSVSKEEWQHEQQRVGLVRTKLRQQLDKIEPDVGQLKSQVVDIRKHFWDEVTVNLAHDDD VLDTYLSLRQQAEVLSERERTHRQLKKLADRMNRLLPSPYFGRIDFKEDGAGGTERVYVG VSSFLDEDGETFLVYDWRTPIASLYYDYAPGPGEYDTPGGLVEGEIELKRQFIIRDGRIH FLFDTGMMIGDELLQQVLSKGAGSQMKTIVATIQKEQNRIIRNDRSRMLIVQGAAGSGKT SAALQRVAYLLYKHRKTLTADQMVLFSPNPLFNSYVSTVLPELGEENMQQTTFQDYLHHR LGRRFNIEDPFDQIEYVLADEETPGYAARVSGIRYKASSRFLHVIQAYKDQLLKEHMLFK DIVFRDQVILSRQALSDRFYGYDASIRLANRIELMKEWLLEELAAFQEREMQEDWVRDEL DFLDKEQYQRAYNQLRKRRGRAESFDDADVEEQLLRKMIVREHFKPLRTRVRRLRFVDVP GLYRQLYENKPLFQSLHRAATAADALVPAENADDRDGLPARWDEICAYTLDRMNRGDLPY EDATPFLYLQELTEGFRTNTIVRHVLIDEAQDYSPFQFEFLKRLFPRCRMTVLGDFNQAV FAQATTLEGSTPVAGLYGPGETEQIVLHRSYRSTREIVEFTRGMLKDGALIEPFDREGGK PVVFTGTGTGKRARADADALVRQMTAEITALQAEGSASIGVICKTAAESERAFEALNGLD ELRLIRKDTPSFEKGVMVIPAYLAKGVEFDAVLIYDASADAYSRESERKLFYTACTRAMH KLQLYSAGTLTPFVAELDPAVYTVETVE >gi|333607711|gb|AFDH01000031.1| GENE 90 139258 - 139554 325 98 aa, chain + ## HITS:1 COG:no KEGG:BBR47_12090 NR:ns ## KEGG: BBR47_12090 # Name: ydzA # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 1 95 1 95 96 105 58.0 9e-22 MLSTPIGRLRVIGFLEGISFLLLLFIAMPLKHFADVPQPVTVVGGLHGLLFVLFLLAVAH VTFVHRWSIIKVLTAILASFLPFGTFVLDARLKKDGWS >gi|333607711|gb|AFDH01000031.1| GENE 91 139611 - 140300 641 229 aa, chain - ## HITS:1 COG:BS_yvgM KEGG:ns NR:ns ## COG: BS_yvgM COG4149 # Protein_GI_number: 16080392 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type molybdate transport system, permease component # Organism: Bacillus subtilis # 42 214 6 178 186 192 61.0 4e-49 MPVNLEMFLSPVWLSLKIALLSGVLAFVFGVSAARLVHKRPFRGRTLLETVFMLPLVLPP TVIGFLLLLAFGRRSWIGRLAEWLWDQPVVFSWGAGVIAATVVAFPLVYQSAKTGFQTID RDLEGAARSMGAGERQVLFHVTLPLAGPALVTAFVLGFARALGEFGATIMIAGNIPGRTQ TVPTAIYTAVDSGDYTLAWCWTGAIVSFSFLLLLAGNFRRNPPAGNSAP >gi|333607711|gb|AFDH01000031.1| GENE 92 140304 - 141134 798 276 aa, chain - ## HITS:1 COG:BS_yvgL KEGG:ns NR:ns ## COG: BS_yvgL COG0725 # Protein_GI_number: 16080391 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type molybdate transport system, periplasmic component # Organism: Bacillus subtilis # 2 271 1 257 260 209 48.0 7e-54 MLMKRVGQAIAAGVLLLGLAACSAGQTGSPDGKPDSSREATGKAAELTVSAAASLKDALE EIGRRYESANSGVKLLYNFGSSGTLQKQIEQGAPADLFISAGVPQMKALLDKQLIDKEHS GVLLTNELVLIVPGDSGANIAVPEDLLKEPVKKIAVGEPKTVPAGSYTQEVLNGAGIWDK LQPKIVWTKDVRQVLAYVESGNADAGFVYKTDALTSGKVKTVYTAKEAAGSSPIEYPAGI VSGTKQAEEARKFYDYLSGAEARDIFTKYGFGLKSP >gi|333607711|gb|AFDH01000031.1| GENE 93 141305 - 141760 403 151 aa, chain - ## HITS:1 COG:AGc4057 KEGG:ns NR:ns ## COG: AGc4057 COG0454 # Protein_GI_number: 15889507 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 1 146 1 145 150 98 39.0 4e-21 MNETAIIRLIRHDELDQLLELYRQLNTEDPVIPPSEDLDNQWNEMFHNPKMKFVVVEDDG KLAAVCVLVIVQNLTRGGRPFGLVENVVTRENHRKKGCGSLILQKALDLAREADCYKVML LISFKEDATLRFYEKNGFEKDVKTGFISYLW >gi|333607711|gb|AFDH01000031.1| GENE 94 141799 - 144366 2024 855 aa, chain - ## HITS:1 COG:PA3961 KEGG:ns NR:ns ## COG: PA3961 COG1643 # Protein_GI_number: 15599156 # Func_class: L Replication, recombination and repair # Function: HrpA-like helicases # Organism: Pseudomonas aeruginosa # 1 855 2 838 838 648 51.0 0 MNVPVEAVLPELLDVLRRERNAVLIAPPGAGKTTRVPLALLKEPWLDGKRILMLEPRRIA ARAAAAYMASLLGEKTGETVGYRMRSDTKVGPKTRVEVITEGVLTRMLQRDPSLEGAGIV LFDEFHERNLAADLGLALCLQSQSLLREDLKLLVMSATLEGDAVAALMNGASVVTSEGRM YPVETRYRREPVKGPVAAAVLDTVLQAWREEEGDLLVFLPGAPEIRRAEKELASRLPAGQ ALVAPLYGSLTQEQQDRAILPDSQGRRKIVLATTIAETSLTVEGVRIVVDSGLVRVPRFS PRTGMSRLETTAVSRASADQRRGRAGRLAPGVCYRLWTEQEERRLAPAGRPEIAEADLAP LALDLAVWGARPDELAWLDAPPAAAYAQACSLLRRLGALDEAGAVTAHGRRVAALGLHPR LAHMALRALPLGAGGLACELAALLGERDILRGTPSARDADLRLRAEALRAYTGPGRGKRR TPHDSGAAGTAAAEPESFADESAPGSADVSVLRRLGSDAARWKRELGVPEGESGGTERTG LLLAFAFPDRIAGQRSPGRFTLSSGRGAVLPDMQRLSAEPWLVCADLDDQGAESTIYLGA PVRRDELEEHFAHEIVEEITVSWDRQAQAVRARKRTSLGMLALREITIAAPDPELMRDAL LQGIRSQGLEALSWNKSARQLRERLSFMAQHDDRWPDVSDEALLASLEEWLGPHVYGMKN RGDLQRLNLTAVLEAMLTWEQRRLLDEQAPTHLTVPSGSRIPVDYSTPEAPALHVRLQEM FGLQATPAIGGGRAPLTLHLLSPAQRPVQVTRDLESFWKEAYFEVKKDLKGRYPKHYWPD DPLEAIPTSRAKPRK >gi|333607711|gb|AFDH01000031.1| GENE 95 144740 - 144949 212 69 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRRLGLPLTYSLKQSAGSGKSTVSADGIWIYAPVSNFTGIDFFTIELANFRGDRTEAVIP VIVEPLVEE >gi|333607711|gb|AFDH01000031.1| GENE 96 144988 - 150540 5131 1850 aa, chain - ## HITS:1 COG:AGl909_2 KEGG:ns NR:ns ## COG: AGl909_2 COG2931 # Protein_GI_number: 15890570 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: RTX toxins and related Ca2+-binding proteins # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 1107 1367 199 486 691 128 39.0 1e-28 MPFINRYSTTTNGAITFTGNTLGLSKQNNANAPETARSIGTFTTVNTSLQDDTYPLGTTS DHRLNSSSAILVLPSQSTVLYAELIWGGSCNLGGENVSSALNNTVSLTNSAGVFTVTPDT AAPSVNTSHYFYVRSANVTSLVRAGGGGTYTVGKVPGTQGDSENSINHAGWTLAVIYQNA TLPSRNMTIFVGNERMDTPSSTNSAVVSGFSTPTSGPLSGRLFVSAQEGGSPLTGDRMQF GPTAADLAPVYGPNNHVSTISCSQINNDSGLLDTTGTFVDRNYPTGSVISGGRQGWDVTN VDVSSKLINSQTSANIRGTTYGDVYLINALALQVNINAPVISVTKESNKTTAYINEAITY KVTISNSGNATANTLTLTHQQPAGTTFIAGSVTVNGTAQASANPYTGISLGNLANSQSIV VQFQSRVTSRPASPAQFADQATVTYQFQSVTGGTVFNGTAASSVVTVAAGNYPPIASDVT GTIAEDTSFTGQIPASDPESAVLSYSVASLPAHGTAALNANGSFTYVPDLNFNGTDSFSV TVSDGSGGTANSLVTIRVTPVNDPSAAQNVSFTTLEDTSLSGKVTATDVDGDSLTFSLAV PPAHGTVVFGPTGVFKYTPSPNYNGTDGFTYSVSDGNGGTATASVTITVTPVNDPPVTSN VNLTTAEDTPVTGAVPPTDVDGDGLTYTLASPVTNGSVTLNADGTYVYAPGLHFNGTDSF AVRVSDGKGGTAVSNVTITVTPVNDPPVASGGSVVTPEDTPVSGKINASDADGDALGYAL GTAPLNGTVVLAADGSYTYTPLANFNGTDSFTVTVSDGNGGAAISHIVVTVTPVNDLPAE QDKNVVSPEDTPVSGRVFASDVDGDALTFAPGAPPANGTVVVASDGGYTYTPAPDYNGTD SFTVTVSDGNGGTDSAAATVTVTPVNDPPVTSDVALTTTEDTPVSGLVAATDADGDSLTY TLRAPASNGTVSLNPDGTFTYVPALNFNGNDSFAVEVSDGRGGTAVSNVILTVTPVNDPP VVFDEQCFTTEDTPVTCQIIASDVDGDAPTYALGTPPVSGTAVVTADGTYTYTPNPDFYG GDSFTVTVSDGNGGTATETATVNVAPVNDAPVTADLVLTTPEDTAASGQIAATDADGDAL TFTLRTQPTRGSVILNPDGTFKYTPIPDFNGTDSFTVLVDDSNGGTAVANVTVTVTPVND PPVAADVADVTPEDTPVSGQIPATDVDGDALTFALGTPPVNGTAVVTVAGGYTYTPNPDF NGTDSFTVTVSDGKGGTATLTVTVTVTPVNDAPVTADLALPTPEDTPLAGAVTATDADGD ALTYLLGTFPTHGTAAVAADGTFTYTPNADFNGIDSFTVTVHDGAGGTDSAVVTVTVVPV NDAPILGTVNETTVEDTVLNGQITAADPEGDPVTYALAAQAANGTAAVNADGSYTYTPNL NFNGLDFFVVTASDGQGGVASAVVNITVTPVNDPPFAAPLALSTPENTPVSGRISAYDRE GDPIVHTVNTEPGNGTVILNADGSFIYTPAQDFNGTDGFAIRVSDDRGAGFVSDVTVTVL PVNDPPRVRNVSQSTFVNQTVSGSIDADDIDNDVLTYSLDTPPANGTATAGPGNTYTYVP NPTFTGTDSFQVRVTDESGASAMAAITVEVSPVFTGSSIETTLMTLQNTPLTSIVPLVPE VSAVYRLSTPPSNGSVSVNADRSFTYVPNQNFTGSDSFVLTESGTLQTVLVKVVVLPANQ APLVGNVQSSTTRNAPVSGTITATDPEGQSLFYNLNTLPLNGTASVRTDGTFTYTPSRNF AGTDSFTVGVTDAGGAVSIALIVITVERKDDGVGNAEPVPDTLTARSETL >gi|333607711|gb|AFDH01000031.1| GENE 97 150763 - 152046 1454 427 aa, chain - ## HITS:1 COG:lin2149 KEGG:ns NR:ns ## COG: lin2149 COG0477 # Protein_GI_number: 16801215 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 3 408 2 405 415 248 36.0 2e-65 MRFRDFHPNVKIRITMHFVTGILSGMVLPFMAVYFAKTLGTTTAGLAVMGNIIAGVAATF IGGYYADRIGRKKLMLISELVCTAAYAVMAAANSPWYQSPYLTLAMTLVIGAGWGLSKPA ADAMLIDVTEPGARKFMYRITYWLNNLSISIAGIIGAFLFSSYLFELLLGVSAVTFISYL VTLIWLSETLQPAAGHAEQEGVPKTGGPFHILKSYGEVFRDRTFMVYVLASLLLVSVEFN LTEYIGIRLERDIHGAVLLPSMTSLNGLELLGILRTENTFAIVVLSLFTGYLLKKYGGTR TMFVGLFLNIAGYSYLAMGNHPWALLVLMLIATIGELIYVPIKQAFLVNIVPDHARSSYM AVNGMLYSGAHFICAINVVIGGFLPAWGMALVLFATGLTGLLLLGSILPKLAPAPNTAAK SKVASAL >gi|333607711|gb|AFDH01000031.1| GENE 98 152223 - 153041 734 272 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_3117 NR:ns ## KEGG: Pjdr2_3117 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 1 269 1 266 270 334 61.0 3e-90 MHPTETKDELLLQLKEIDKWEQEQKDIFFWEKLGRLPFALLDKVTPRFLQDRIGQLIDEI GSYIQTGGKYLVSEKGMLDHLSKHTAEEKEARQDVPSIREAALLPLAVMDRAADSLAESR SALATVQGATTGFGGIFTLAIDIPALLGLSLKVLQEIAVCYGYDPNDKKERIFIINCLQF SSSDIVGKKAILEKLSVYDAEGRQSVSQLQGWREVVTTYRDNFGWKKLFQMIPIAGMLFG AYFNRGTIRDVAEAGKMLYRKRRILERLNDAA >gi|333607711|gb|AFDH01000031.1| GENE 99 153087 - 154061 839 324 aa, chain + ## HITS:1 COG:TM1351 KEGG:ns NR:ns ## COG: TM1351 COG0008 # Protein_GI_number: 15644103 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glutamyl- and glutaminyl-tRNA synthetases # Organism: Thermotoga maritima # 5 323 1 322 469 221 41.0 2e-57 MSSTLVRGRFAPTPSGELHIGNARTALLAWLQTRAAGGTFVLRMEDIDKPRCRPELAEQI TEDLRWLGLHWDEGPGAGGPFGPYEQSVRGRLYEEALGTLRERGHLYPCYCSRAELHAIS SAPHGLSSEGPSYPGTCRFLTEAEREARAADKVPALRFAMPAEDIAFRDLAAGAQVFPGG AGGDFVVQRADGIVAYQLAAAVDDAAMGITDVLRGWDLLDSTPRQLMLLRALGYEPPRYT HVPLLYGPDGQRLSKRHGSLSVSAIRRAGVPPETLLGVLAYLSGLTDRPEPVQAAELTRD FRLAAFPRHPVQLNRQLLRLLSAG >gi|333607711|gb|AFDH01000031.1| GENE 100 154217 - 155557 1239 446 aa, chain + ## HITS:1 COG:BH3309 KEGG:ns NR:ns ## COG: BH3309 COG0477 # Protein_GI_number: 15615871 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus halodurans # 1 437 1 400 403 426 54.0 1e-119 MEAKKKWDLISVASIPLIMTLGNSMLIPILPLIREKLHVTSFQVSLLITVYSIAAIILIP VAGFLSDRYGRKIVIIPSLIIAGIGGAVCGFAAWFMPNPYTIILLGRLLQGIGAAGAAPV AMPLVGDMFTEESDVSSGLGVIETANTGGKVLSPILGSALAALVWFLPFMAIPVFCLISV LMVLFLVKKPEKSGGREAGSDQKRANTGSKAADKNRKPQTDSAKESDNTDGAPISLPVFL KDLKWIFSRKGRWLYAIFAIGCICMFLLFGALFYLSELLEEKYNLHGILKGCVLAIPLTL LCLTSFITGKIIGQHKKRMKWLTFAGSLLALGATLGCLFFSSLYGLLTMLSLLGIGIGLA LPCLDAFITAGIDKAQRGTISSFYSSMRFIGVAVGPPVVSVLLSRYPTILFYVLGAACLL AALLALFAIHPSTDEEPRPKPEPSPA >gi|333607711|gb|AFDH01000031.1| GENE 101 155657 - 156331 576 224 aa, chain - ## HITS:1 COG:BS_yoqW KEGG:ns NR:ns ## COG: BS_yoqW COG2135 # Protein_GI_number: 16079108 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 1 210 1 224 224 151 34.0 1e-36 MCKQYSLTADLAEIQNRFQVDKIAAPYKARYNISPRQHVPIIVSVNGELVLDEYRWGFVP FWARDAVNADGMSVHQDPAYRKIFMRQRCIVPCSGFYYWKTEGKKSFPVRVVPRSREVFG IAGLYDVWSDPRGKELRTCTLLMTESNSLITSFHNQMPVILNQHSIGEWMSQGAMDTDRL IPLLKPFPAEAMEAYPVTPAISNLELDESHCIEEMNLKVAWIKE >gi|333607711|gb|AFDH01000031.1| GENE 102 156648 - 158525 1767 625 aa, chain + ## HITS:1 COG:lin0647 KEGG:ns NR:ns ## COG: lin0647 COG1368 # Protein_GI_number: 16799722 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily # Organism: Listeria innocua # 12 624 1 602 606 345 32.0 2e-94 MSIRWKEWYKSMFVWTIVLLLAKMALFRILVYDKLTLDKILIDAFDVMVAACLIELFRPG RVKTALFWIFNILVSLALLASAIYFQNFGTVPIYTTLKQLNQVGQVSSSVRSIMRPEDLL FFVDILVVLLFKLVVRKKTKRNYVPFRLPTPVTYALMIVSVLLASSSIAAASGTKNELKK GEQLGFFAYQAVSLFDGLRANRTNYADISEVKQNLTELEASFPRSAPLAQGAAPNYFGTE KGKNVIVVQLEAFQNFPINLEVNGQAITPNMNELLKSSLYFNNFFQQVGQGNTSDAEFIS NTSIYPTATVAMSSGFNNRELPGLPRALNALQYETNTFHVNDVKFWDRDKMYPALGFKQY FDKPSFTNDNFNAFGASDEELYRTGMKRLVELKNENQPFYAQFISASSHHPFKIPADKQT LDLPENIKGKQLGDYLEAVHYTDYAIGTLINQLKENGMWDNTILVMYGDHFGLQPQDNDP KMVSEALGIDYHEQISRYNIPLIIHAPSQQEGKQIETAGGQLDIMPTVANLLGIRLEEAG IVPFGHDLLNVTKNVSGIRYYLPTGSFVNNDVLFVPGEGFDDGTAVSLKTHKPVADISQY RKDYDYIMDLMQLSDEYVKLLPVRK >gi|333607711|gb|AFDH01000031.1| GENE 103 158769 - 159209 231 146 aa, chain + ## HITS:1 COG:lin1659 KEGG:ns NR:ns ## COG: lin1659 COG1846 # Protein_GI_number: 16800727 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 11 138 12 136 146 62 33.0 3e-10 MESPLYPIYTSFREVNQTIKRILRTNAEAMGLSHVQFTILRLLQNCPDTNVTELAERIQQ TNSSVSVAIEQLVGMGLVNRIRSDEDRRNVKLNLTDRGTEKVRLSMNEDSHLYKQLVRIL EVPPQEIQNMLDTHQKILDRLNAKEE >gi|333607711|gb|AFDH01000031.1| GENE 104 159216 - 159866 851 216 aa, chain + ## HITS:1 COG:SA2143 KEGG:ns NR:ns ## COG: SA2143 COG1566 # Protein_GI_number: 15927933 # Func_class: V Defense mechanisms # Function: Multidrug resistance efflux pump # Organism: Staphylococcus aureus N315 # 5 216 3 214 215 171 40.0 1e-42 MGYTRIVITNVVVIIVLIVAAVTGYYFYNQSTTYIKTENAQIAGQQMLITAPATGKLEDW KGKVGQVFKAGDVIGTVQTAGAQGTTAVNVSMPADGTVVQTSAYDNETVAPGTPLGYAYN MGSLFVNANIEETQLKNVKVGQTVDIYVDAFPNNTLTGTVNQIGQATAGTFSMLPQSNSN ANYTKVTQVVPVKIMLTDNQGVALVPGMSAEVRIHK >gi|333607711|gb|AFDH01000031.1| GENE 105 159881 - 161530 1757 549 aa, chain + ## HITS:1 COG:BS_yhcA KEGG:ns NR:ns ## COG: BS_yhcA COG0477 # Protein_GI_number: 16077966 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus subtilis # 16 519 5 507 532 498 51.0 1e-140 MSETKALVVYKEKEPEEDMTKHRGTVLLVLILGAFVTILNQTLLNVALPHLMNDFNASAD TIQWLSTGYMLINGIIIPISAFLIGTFTTRQLFISAMISFTVGSLICGMAPNFTIMMIGR IVQGAGAGIIMPLMMTVILNIYPPQVRGRAMGTIGIAMFFAPAVGPTLSGWIIEHWTWRI LFYVAMPIAIVDIIFAFFVLKNVTKVTKPAFDFLGFVTSTIGFGSLLYGISEAGSKGWDS VPVVSTIIIGVVFIALFIVRELTAKNPLLNLRVFKYNMFSLSTVVSCIVNMAMFGASILV PIYVQNIRGYSPMEAGLLMLPGALLMGVMSPISGALFDRFGIKPLAFIGLTITAITTWQF AHLNADTTYSTLMWLYTIRMFGMSFIAMTIMTTGLNQLPRELASHGTAASNTARQIASSI GTAILVTIMTNRTTYHVGQYANDLSLSNPNYNPSGLDSMGAAFAQQMGQSLAAGKAYASQ VLYGLVTKQSTIQGINDAFVVATGLTIVALVVSFFFRRVAHGKSAKKKLAEKPAEPIELT DSRGQTARV >gi|333607711|gb|AFDH01000031.1| GENE 106 161576 - 162112 496 178 aa, chain + ## HITS:1 COG:BS_yhcB KEGG:ns NR:ns ## COG: BS_yhcB COG0655 # Protein_GI_number: 16077967 # Func_class: R General function prediction only # Function: Multimeric flavodoxin WrbA # Organism: Bacillus subtilis # 1 177 1 172 176 245 66.0 3e-65 MKIYVVYDSESGHTEALARSIAEGAAAHPEAEVLLHHVNEARISDLEDVDAIIWGCPGHF GTISSGLKSWIDKLGYMWAKGELIGKVGAAFCTTATVHGGIEMTLWNLITPMLHNGMIIV GLPSNVPENVLYGSYYGVGITCPVEASKDAPPNLPTESDLALGRALGKRVADIAQKLA >gi|333607711|gb|AFDH01000031.1| GENE 107 162138 - 163304 567 388 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MDLFYFLAIVVIGLLVLIPVNLKLFRKSAQSQQPEKPAEEPASGSRVNDLTDGHAPETAE PHGEVLSADVGTRAAAPAAAPDLTDTAGAGTHPDSLEEQHAPELTVPSASSREPDTAPAR PGTAAASASAPVEQEEARFAPAAEEAFPPLAQPEAEPELPPRSQRHAGHTHGRKASLRGS SIRPAAQTRRAEEPLPEEPPLEAAEPSAAGALASADAAGSGAAESAAASAGETPRLQLHP FADRKRSSEPLLADGADGEASLRADETPVIRRAPSAPAAAAGSTSAADRAPSGVPVPHAA ELPAEMTAAAPAAAAARSGSAGEDRGVHSDMDYRDALRRGLRPEPEPEIVPEPPKDEKYD DRKYRDTLRDMFREAAKNAGNGGTDTRK >gi|333607711|gb|AFDH01000031.1| GENE 108 163403 - 164215 1035 270 aa, chain - ## HITS:1 COG:BS_thiD KEGG:ns NR:ns ## COG: BS_thiD COG0351 # Protein_GI_number: 16080853 # Func_class: H Coenzyme transport and metabolism # Function: Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase # Organism: Bacillus subtilis # 1 265 3 267 271 353 67.0 2e-97 MYKALTIAGSDTSGGAGIQADLKTFQERGVYGMTALTTIVTMDPHNGWAHQVFPISTEVL APQLETVLHGVGVDAMKTGMLGSVEIIELVGRTIDRENVGNVVIDPVMVCKGNDEALHPE TTVSLRDVLVPRSTIVTPNLFEAAQLSGHAPLRTVEDMKEAAAAIKKLGAKYVLVKGGGK LQHDKAVDVLYDGETFELLESERIETTNTHGAGCTYSAAITAELAKGKSVREAVRTAKAF ITEAIRHSFPLNQYVGPTLHSAYRVYGGGN >gi|333607711|gb|AFDH01000031.1| GENE 109 164439 - 164966 592 175 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_2677 NR:ns ## KEGG: Pjdr2_2677 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 1 170 1 170 177 227 61.0 2e-58 MGRRFIIESVLVAIYGQLLVPGRPVEYILPYSTVAELYELKDSPEPVMPDPQEDAHVKEM IGELITFFEDPLNKKKIERALTVPWRKSPPILVNDMVSFTVINSVDNAHYGESFDPVETE LILTALHEKVPMLTDQVELVEKIIQAEIPVQIYDVDDFEFAVEEGISADDFKNLL >gi|333607711|gb|AFDH01000031.1| GENE 110 165098 - 166087 1062 329 aa, chain - ## HITS:1 COG:YPO2980 KEGG:ns NR:ns ## COG: YPO2980 COG0667 # Protein_GI_number: 16123161 # Func_class: C Energy production and conversion # Function: Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) # Organism: Yersinia pestis # 1 329 1 329 329 449 67.0 1e-126 MYYLADKDRYGSMIYNRVGRSGLKLPVISLGLWHNFGGSDSYENGRAMIRKAFDLGITHF DLANNYGPPPGSAEENFGRMLKTDLAPYRDELIISSKAGYLMWEGPYGEWGSRKNLTASL DQSLKRMGLDYVDIFYSHRFDPETPLEETMMALDSIVRQGKALYVGVSNYTAEQTADAVR ILKELGTPLLIHQPSYSMFNRWIENGLQDVLRENGVGSIAYCPLAQGLLTTKYLGGVPAD SRAAKPSVFLQEKDVTDEKLEQIRRLNELAGDRKQTLAQMALAWVLREGRLTSALIGASR PGQIEENAAVVANLGFSGDELDLIESVLA >gi|333607711|gb|AFDH01000031.1| GENE 111 166480 - 167145 656 221 aa, chain - ## HITS:1 COG:no KEGG:BCG9842_B2345 NR:ns ## KEGG: BCG9842_B2345 # Name: not_defined # Def: hypothetical protein # Organism: B.cereus_G9842 # Pathway: not_defined # 10 221 7 223 223 181 44.0 3e-44 MNSNLSHKSRILMMAAVVSLPLALAACGSDSKAVPSPTAAPTVSAAPTPSASPSGSPPPS ATPAPSAKPGEAGSTGSDKAAQVKGIMELARKGQIAGVEYAAHTGLIDDVEKKWGKPDKQ ESAGKGQYATYTKRGVAFGFNKGMLIFDVRSYDKALQQLALADIKQTLGEPAEVTVNGGD TIYTYGAGSRYQLKFVIPKSTGKVDHISVYSPEDTKNLMAG >gi|333607711|gb|AFDH01000031.1| GENE 112 167452 - 167814 393 120 aa, chain + ## HITS:1 COG:BS_yetH KEGG:ns NR:ns ## COG: BS_yetH COG0346 # Protein_GI_number: 16077783 # Func_class: E Amino acid transport and metabolism # Function: Lactoylglutathione lyase and related lyases # Organism: Bacillus subtilis # 1 120 1 120 120 158 61.0 3e-39 MIKQAGTIAVYVDDQQASLKFWTERAGFAEVANHPMGPDASWIEVAPPGAQTRLVLYPKS IMPGWEEQKAAVVFECDDIQETYKTLSAKGVRFLEAPNQMPWGTYARFEDIDGNEFLLKQ >gi|333607711|gb|AFDH01000031.1| GENE 113 167892 - 169124 1087 410 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_2456 NR:ns ## KEGG: GYMC10_2456 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 410 1 432 432 256 35.0 2e-66 MIRRSTLLLIGLLLAGMLSGCLSTGSNEAKAPQAPEPTVTPEPQPTVKPGADTKKDTPSE FQIQTRLLDFHLIDERTGYAWGVTNQSLRMYRTLDGGQTWQNVSPPSAGNFKFSPGYGQA ISFLDKQRGWIVRSDLEGKQTTIWQTENGGGSWKAVDLPEQMNPVVLDFQTPQNGWMLSI TDPSKADSGHILYSTSNGGSTWQRTADAQLPQEGTITGLTFQNLRTGWLSMEVKGQPKMY RSEDGGRTWKESKVIAAARSSEACEVVDVLQPVFFGSDRSKGWIPFSCPSSEADQFHGLF TEDGGVNWNYAPFKVGTDKESNAFTLPFFLSETDGWYLDKNIVYHTTDKGKTWAPLNEDK ILSRTWSKYPQLTQLQFISENVGWILLETKDQKRSVLVQTKDGGKSWSVL >gi|333607711|gb|AFDH01000031.1| GENE 114 169484 - 170353 937 289 aa, chain + ## HITS:1 COG:BS_yeaB KEGG:ns NR:ns ## COG: BS_yeaB COG0053 # Protein_GI_number: 16077699 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted Co/Zn/Cd cation transporters # Organism: Bacillus subtilis # 1 286 1 286 290 310 56.0 2e-84 MEAYNDLKQGERGAWTSIVAYIALTVLKLGIGYKAGSEALTADGLNNATDLIASVAVLIG LRISRKPPDSDHPYGHFRAETIAALIASFIMFAVGIQVFIQAISSFTGPKLEAPGLLAAW VALLCAAVMYGVYAYNIRLARRINNKALLAAAYDNRSDAFVSLAAFAGIIGARLGLPWLD PVAAVLVSLLICKTAWGIFIDAAHALTDGFDDKKLVLYKQTIAGTPGVEAIEDVRARVHG NQVLLDVVIVVDHQLTVAQSHDIAEDVEQRMLRKHKVGHVHVHVEPTRM >gi|333607711|gb|AFDH01000031.1| GENE 115 170437 - 171087 523 216 aa, chain + ## HITS:1 COG:no KEGG:BcerKBAB4_4961 NR:ns ## KEGG: BcerKBAB4_4961 # Name: not_defined # Def: integral membrane protein # Organism: B.weihenstephanensis # Pathway: not_defined # 2 210 1 199 206 148 38.0 1e-34 MLDFILQYKWAFFIGGEAIFWVSIACFLLLRYVWNYRKLSKLFILLFLLSDLWMAAIGYL DYRRTGQFETFQLVILIFLAYALFFGRNDLRKLDAFIARKTAKWRGIPANELPPAELKLT GAAHTRRELKNFSVHFALYAAVTAVLIVMYGILPAESLPPEPSGPLALRLALAGIVNHET AASVLKVWSLILAVDAAITLSYVIFPKKPKKTAASG >gi|333607711|gb|AFDH01000031.1| GENE 116 171263 - 171754 518 163 aa, chain - ## HITS:1 COG:no KEGG:BSU31140 NR:ns ## KEGG: BSU31140 # Name: cdoA # Def: cysteine dioxygenase (EC:1.13.11.20) # Organism: B.subtilis # Pathway: not_defined # 1 160 1 159 161 128 40.0 6e-29 MNLLQSIEQSFGGLKKPTMNELRAGLEALSLTRDKIAPHVTEPERLAYGRHVLLRTADVE VVVIHLPGHSKTAIHDHGSSIGCARVIEGEMLNVWYELDRGGYPEPFMAAPVAGGECMYA PRGQIHEMRNEHEQRIVSLHVYSPPLTGTKAYLPYREVLDFVI >gi|333607711|gb|AFDH01000031.1| GENE 117 172201 - 173031 794 276 aa, chain - ## HITS:1 COG:FN0869 KEGG:ns NR:ns ## COG: FN0869 COG0561 # Protein_GI_number: 19704204 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Fusobacterium nucleatum # 2 254 7 262 270 100 27.0 4e-21 MIKLIVTDLDGTLMNADLEVAEADARMLREAAGQGVQICIASGRLYPDIRKIMNRVGVEA YGISQNGSAVYTREGEQLDASHFPADRASDLFEIVSKREMVFFVCCSDETIRLHKSTDAS RPYEERQLSPVHHQADIGREIRSGQVKPCKFSLFGEMEKLLSFREELMEKYAGSVEAVIS DHDCMDLMPAGISKGTGLARLLKELGLKHDEAACVGDSYNDLPMFALTPHSFAMMKSRDE VKAGAGHTTSSVAEAVTAVLEHNRSRRGNEAAEAQV >gi|333607711|gb|AFDH01000031.1| GENE 118 173024 - 173800 807 258 aa, chain - ## HITS:1 COG:BS_glcR KEGG:ns NR:ns ## COG: BS_glcR COG1349 # Protein_GI_number: 16080683 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Bacillus subtilis # 1 258 1 258 258 248 46.0 7e-66 MFQEERIEAIMEYLREHQRMDVKEICDRFDVSRDTARRDLVRMDELGLIVRTRGGAMLPT LNRAVTAYKDRMQRAPDEKRQIGREAAKLIRDGHYLFLDTSTTVATVAEHIRTTGNVVVT NSIDIAAKLADNKSLKVHMLGGQLELEHRFLFGATALAQLADYYVDTLFLGACGISPDGL SYPHEEDGSIKREMIRRADRVVVLADHTKFGKQLFYKVAGLDDLDVIVTDREPEESMLRL LERHDVELLIVEGDNQHD >gi|333607711|gb|AFDH01000031.1| GENE 119 173995 - 174948 1008 317 aa, chain - ## HITS:1 COG:BH3937 KEGG:ns NR:ns ## COG: BH3937 COG0039 # Protein_GI_number: 15616499 # Func_class: C Energy production and conversion # Function: Malate/lactate dehydrogenases # Organism: Bacillus halodurans # 12 313 4 308 310 311 51.0 1e-84 MSTNELNNRETSKKSRIVVIGTGAVGSTTAYTLLLRERMSELVLIDYNHAKANGDALDMN HGLPFTGRVKVWAGDYSDCEGADIIIICAGVAQKQGETRLDLLKRNVDIFNGIVENVTKY NQTGIILVATNPVDIMSYFTWKKSEWPVNRVIGSGTLLDSARFRYLIGEKLQVDPRSIHA AIIGEHGDSEVPLWSLANFAGLPLELNQEDKDEIFQNTRDAAYQIIEAKGSTYYAIALAL DRICTAILRDEGAVLNVSTFVSNYHGLSDVYLGVPCIVDRTGVREVITLPLSEEEENNLR KSGAKIREMIDSISERL >gi|333607711|gb|AFDH01000031.1| GENE 120 175021 - 175881 343 286 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_6168 NR:ns ## KEGG: Pjdr2_6168 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 27 103 17 92 121 72 44.0 2e-11 MDRRIIRIELFEFDVPCCYHHAKGKLENCRYGLLKLTDEGGETGWGECLMSVNEKVFDLV NWARFLYRLQKSTLAQALDTVRLYRVLWGNVKADLVEMALYDLKARSQGKPFVDVLGSFS GFSGFSSFGSAGRSGNGSFRLETAAARSDGGTWPDTESHVSSRVWQAAGFGHAVADREFP VSGRFQAERELHPGCCGSLLDDLRNACMLRQEGMALAMHKDYLIGPACCLWEHTAAVLGA NWLEEGSSPEPARLAPLQACERIAGTGFQLDQPVLFEESRAYFVVL >gi|333607711|gb|AFDH01000031.1| GENE 121 176287 - 176826 693 179 aa, chain - ## HITS:1 COG:BH2253 KEGG:ns NR:ns ## COG: BH2253 COG2259 # Protein_GI_number: 15614816 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Bacillus halodurans # 1 159 2 155 173 150 54.0 1e-36 MFNWLRTNVYAAGLMLILRFYLGYAWITGGWHKLTGGFDATGFLKGAVAKPIVDKATNEL VYPTFTAFLENFALPNAKLFNVLIPLGEFLVGLGLVLGALTTAAAFFGVLMNFMFLFAGT VSTNPWMILLGVIVIAAGANAGKFGADYYILPYLRKLLRHRGDHGANPTLGGGKTRAHI >gi|333607711|gb|AFDH01000031.1| GENE 122 176886 - 177092 177 68 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTALHLVNAAPAHCQACGARLQTHPEGYKDLCFDCVQTWQTAKAQKAGETGLPLPLEAEC GLIEQYWL >gi|333607711|gb|AFDH01000031.1| GENE 123 177180 - 177644 -82 154 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MQIWFYYYRRNASSQTCLDAAVTGIWLSKESIELLVIRDCDIIHMPLLSNGFHYEECLNM IIITYFGLSVINITYIPLGEDYTKVRKREQHTKEGEGAMRETADPQVQQGRCPQCGSGIL AAKETESPWVCEDCRLKPLVSRAEGSAGSSDLPE >gi|333607711|gb|AFDH01000031.1| GENE 124 177662 - 178732 1109 356 aa, chain + ## HITS:1 COG:lin0994 KEGG:ns NR:ns ## COG: lin0994 COG3594 # Protein_GI_number: 16800063 # Func_class: G Carbohydrate transport and metabolism # Function: Fucose 4-O-acetylase and related acetyltransferases # Organism: Listeria innocua # 8 286 11 285 343 145 34.0 9e-35 MRNPTAVFFTNVRFFLILLVVLVNLLLTLPPLPEAAQAIVTAIFTFHLPVFVLVTGYFAK KYWQTPEAAAGMLRIALQYLFFQTLYSVLDLFWLHSPGIRYSFWLPYWMLWFLTAHFGWK LLLIPFARLKHPVAAAVLLGAAAGFLPAEAGAWLGLTRTLVFFPFFLAGYYWREEREPRR RTAPQRRAIRAAAALLLLALPAFWHAAGADTAAQWLAGGGSYAQLGVPAAAGTMLRLGCY AAQAAASAAFLLLLPRAESRLTVLGGRTVYVFLLHGAAIKLLGAAGLLQLLARLMDAGAA GAAAALAAGCAAAAAIVAALSTRWFAAVMRPCIEPDAARALRWLQRRLPGRARSTY >gi|333607711|gb|AFDH01000031.1| GENE 125 179233 - 181584 1797 783 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_4980 NR:ns ## KEGG: Pjdr2_4980 # Name: not_defined # Def: S-layer domain protein # Organism: Paenibacillus # Pathway: not_defined # 49 781 35 764 770 332 34.0 3e-89 MNDKRASRLRKAGMLTVAGSLGVGLLLPGMTNAANDSAPAYRFQEDAKIVSGSGPVPSAD PSGSAKREKEAKITKEQAIDRLRELFPDLKNAEVSSASLGESTVRYPPVPRLVWTLSWSV TKGNSTSSFHSVVDALTGDVWSTSFPGEWIKEEESFYPPAVNQEKAAQIALELVKKAIPS LQNDMLEPSLSYGSQSALFGPVLYDFSFRRKVNGLFVDFEGINVQVRGDGRVTGLQASLH KSSYPSPTPKISEREVAAKYKKDFAVDLQYVKLQNGSGPKEWILGYVRNPLFYAPVDAQT GEYVFEGLYAAYGTSAYADVPKTGASFKAHTGAPLSAEQAAELVKATGYVPEGSNLVQKS EQEGWRTPGQLVWSLNWKDENGNDTHAIVDTRTSQILELSENGIYPPWNQNPTVKPRSIP TESADAKALQLFDELVPQASENWKLVKKNSAVKDNASSKKNEPFTYQFQRVYKGIPVQDQ QIILHLNGDGSLYTLQLPYEQEAIEEALKAVKPAVVTKEEALKRLQADGRVSLSYTMNGA FYTGGGDDKERKLLLVYRQGSEAESAWQVLDAASGKLRDLRPVPAAAKPSEGKDITGHWA QKELAELVRLQVLVPDADGNLNPDAVLTYGDWLTMFTRGIRPDSYYGESYRKAEALYADV QPGSPYYRAVSLLTDINRLQPDPDRKLGVDEPFTREKLASALVNELRYEKLSSLLDKPLG KLAVTDEGSVKNKADVFLVMKLGLLQDIGGEFRPQDAVTRAQAAVVLMRMAGLQGKTDQP IAY >gi|333607711|gb|AFDH01000031.1| GENE 126 181653 - 182372 653 239 aa, chain - ## HITS:1 COG:no KEGG:CPE0541 NR:ns ## KEGG: CPE0541 # Name: not_defined # Def: TrkA domain protein # Organism: C.perfringens # Pathway: not_defined # 3 117 4 119 226 85 41.0 1e-15 MELLLIVIYLGIVLLVIEISAVLMMLTGLDNEIARFQVTSLLTGTGFTTQESELIIRHPV RRRIGIFLILFGVFSLAVIITLVSNLLEKRFRLPELLVITGILAFLLVILKVKPMQKRLS KKLHAPLEEDEGVEELPVSELLYNDEEDWIIDIPVIENSEYEHCHIDDLCTADEDINLLF VQRGPLRIRRRSENSDTRIEAGDVLYVYGNKKQISEKFSKELEHRHENLVDENKTVSLL >gi|333607711|gb|AFDH01000031.1| GENE 127 182477 - 182617 107 46 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MPVFNILAPNVTCSNSLQMVRDDELIIALQVQPSQSAGEFPAGRAI >gi|333607711|gb|AFDH01000031.1| GENE 128 182583 - 183638 1191 351 aa, chain + ## HITS:1 COG:BS_ygaE KEGG:ns NR:ns ## COG: BS_ygaE COG4129 # Protein_GI_number: 16077936 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Bacillus subtilis # 1 335 1 339 353 185 32.0 1e-46 MTFGARMLKTGMAVTLALYLSMLLHTTAPVIAAVAAIFALQPSIYRSWRYFLDQLQTNTL GAALALVAGTFFPKHPIAIGVVCILAIMICLKMKMEANIGLTLVTVIAVMDASGGHWWFA VNRFLLTSLGVGSAFVINVLFFPPNWQKRFMEEVHGVFSQISPLQRTVISNEMKESVFQE TKDGVVGALFRLEEKYKLFEEEQKKLKRLKYSQSKRLVVYKQMLHTLRKGVDILQLVEEH YFQASRTPNMNAFVDEHLEALTQYHEYVLMKFEKKYKNESYEKLEAMDLKNDAFLRLITD ASSSTGDLHRLVVVASGIYDYGHQIVRLDKLVEQFFKGADENEKQTGLKFF >gi|333607711|gb|AFDH01000031.1| GENE 129 183741 - 183953 279 70 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTDNHDPNFVLGAPSSSLDSAEASSAQGTELTQEQFLQSYEAGTIEDDDGLGEEAQAEAG YRPESSPDRA >gi|333607711|gb|AFDH01000031.1| GENE 130 184130 - 184519 394 129 aa, chain - ## HITS:1 COG:no KEGG:BBR47_42750 NR:ns ## KEGG: BBR47_42750 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 12 129 2 115 115 81 39.0 9e-15 MNPDFISIQMTDGELKYSHKKNGLGLTVTTKELIVQKPHVNYYIPLQAILSIVPFEAKGR TLTLSSRNGGGSELTSMSAGLPHYRLSVSGVRLHNRSGIFTMGAVEFIVPLRDELLLTIS RLSGLHAVE >gi|333607711|gb|AFDH01000031.1| GENE 131 184631 - 184876 316 81 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MDHTFLIVKVAEQEQLHTVIRTLKQHMLAPLLAWKTPGKRHRSHLILRGDLARLTEAKLL LGGLMSAQSIEMDFQVLMLAS >gi|333607711|gb|AFDH01000031.1| GENE 132 185237 - 185518 222 93 aa, chain - ## HITS:1 COG:BS_ysdA KEGG:ns NR:ns ## COG: BS_ysdA COG3326 # Protein_GI_number: 16079936 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Bacillus subtilis # 6 83 2 79 89 79 47.0 2e-15 MFFIKILVLYLLVVNLVAYVWMGADKRRARSGEWRVPEKRLFLTALIGGAPGIWAGMYAY KHKTRHFTFKYGIPLLLIVNVIVFWKLFRFVGE >gi|333607711|gb|AFDH01000031.1| GENE 133 185606 - 186358 279 250 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 8 240 4 238 242 112 31 2e-23 MKIEFAGKAVIVTGAASGIGRVIARRYAERGAAVVLADTDEARGEDNARTIREGGGEALF VPADMSRPGDIVRLIDQAAGTYGPLGCLINNAGVSEWKSPYDLTVEEWDRVLHTNLRGTF LCAREAAKRMRETGGGSIVNIASTRALMSEPSSEAYAASKGGIAALTHALAISLGPDGIR VNCISPGWIETGDYGALKPSDHKQHPSGRVGTPDDVARACFYLTDPANDFVTGENLVIDG GMTRKMMYEE >gi|333607711|gb|AFDH01000031.1| GENE 134 186467 - 188341 1296 624 aa, chain + ## HITS:1 COG:BS_yhjP KEGG:ns NR:ns ## COG: BS_yhjP COG4533 # Protein_GI_number: 16078123 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, periplasmic component # Organism: Bacillus subtilis # 1 601 1 573 575 253 28.0 9e-67 MQITHHYLELCRAYSAVPQGLPVSLTLEELAERLHCTVRNVKLVIRKMSEAGWITWVPGR GRGNKSELHFHYTLEEMLMKQTAEFAEKEQYQHAFEWIHQYADTPLMKEQLLQHVSRYFG YKAKDTEQDADVLRLPINKTYRTFDPAALLFANDVHLSRQLFDTLVRYDRAAGDFVPSLA HHWESDETCTIWTFYLRKGVLFHHGRELEAADAAYSIRRLLSPEVFSPQRWMLEDVRQIR VLSRMAIQFVLDKPHVLFPHCLTSPSAAVLPRELCESDPAVYFTCPVGTGPFRLEIRPGY GYLLHANERYYLGRPFLDVVEHILLRDSPELVVMTDACNMVQRAPYAPGSKPQHDWQAVE CISSGCALLSFNRRKEGPLQDAGLRRYVRSVIQACAMVEELGESRAIAAASFLPDKSLQV GCNPYLEEKEKESAGIPFSSAYAGTELTLHCKDSYKTYEDIDWIVNRCLKAGLHIKVVLH ERDEFLTPDVMDEADLVLYEVVLDESETLSLLELFMQEEGSIRRMFDDPLRAELSRRVGK LLAEPDPRKRLDLFDKLESLLTEDSAIHFLYHRRMQTTYHKSVRGLRLNAFGHIDYRHIW FEPQDPLAGHTASADISSTFRTIH >gi|333607711|gb|AFDH01000031.1| GENE 135 188403 - 189107 615 234 aa, chain - ## HITS:1 COG:all7616 KEGG:ns NR:ns ## COG: all7616 COG2949 # Protein_GI_number: 17158752 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Nostoc sp. PCC 7120 # 37 212 49 227 228 135 38.0 7e-32 MKLRWRGLAYGLGAAAIAGGIWLFTSDYEVRKEGTARKISAEQAPSAEAIIVLGAKVHPD GRLSDMLKDRMITAAELYESGKADKILVSGDHGTLGYNEVGAMKNFLLERGIAEERIFMD HAGFNTYESMYRAKAIFQIRKAIVVTQDYHLARALYDAEGLGVEAYGVAADRQEYRGMAK FKAREMAARSKDFALIRFFKPQPTYLGEVIPITGDGRATEDSWLIEEAVWRPNA >gi|333607711|gb|AFDH01000031.1| GENE 136 189403 - 190545 967 380 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_3651 NR:ns ## KEGG: Pjdr2_3651 # Name: not_defined # Def: GCN5-related N-acetyltransferase # Organism: Paenibacillus # Pathway: not_defined # 1 380 2 379 379 209 37.0 2e-52 MNIRLVNQEEMREAADLADSIFRDSEQISMAEGFPFLFSALHSQSVGAFENGRLVAFMGL LPSVIRIGPARLAVYSLGSVCTHPESRGQGIAGELFAAARGQVARSGGSLLLVSGGRSLY TRAGCRPFGSLRRYALGGVAPLQADESAGGYRLRPYERGDLPAMSRLAAARRSAFEQSPW DLGSLIDARAYASCLKLRHETWIAEKVGELAAFIVAAVPDPAVTSTRFPRLIEWAGEPEA AARLLAGLTAQLELAEFQAAVPFYETGLHEALRSFPSEESRNEGTLLVTDAQLLLRQLRP YLDEQSGSRLGERLGVRETGEGGVRLTLPGLPDLLLSVDDWMELLFNPDAMVRIAPAQWQ EELRSVFPLPFPYTAGLNYI >gi|333607711|gb|AFDH01000031.1| GENE 137 190776 - 192188 1382 470 aa, chain - ## HITS:1 COG:alr3724 KEGG:ns NR:ns ## COG: alr3724 COG1027 # Protein_GI_number: 17231216 # Func_class: E Amino acid transport and metabolism # Function: Aspartate ammonia-lyase # Organism: Nostoc sp. PCC 7120 # 8 459 1 452 471 428 50.0 1e-119 MTEQQPSMEKNTKRRTAGDSLGQVQLPADAYYGAQTQRAVLNFPISGYRLPREFIKAQGI IKASAAAVHKELGELDGEIADAILAAADEVIEGRWDSQFVVDAFQAGAGTSQNMNANEVI ANVALEKLGLERDRKDKIHPNDHVNKSQSTNDTIPTAICISVHESVERKLLPALDKLIGE LTNKSREFHSVVKSGRTHLQDAVPLRLGQEFEGYAATIGQMRKQLEQAADGLLELGIGGN AVGTGVNSHPEYAARMVAEIGRRTGTPYRQAPSRFAFMQNPSAALRVSGLLRDVAVHLIK LSSDIRLLNSGPQTGLAEIRLPAVQPGSSIMPGKVNPVLPEMLYMVCCQVIGNDTAVQTA MIGSQLEINVMMPVIAHNVLQSAHILSTAAEAFCERCVKGIEADEEQCRYWMDRSLSLVT MLNPIIGYDKAAEIAKESLKTQKPLRQLVVEKAILTEEEWERIVQNSLSE >gi|333607711|gb|AFDH01000031.1| GENE 138 192670 - 194136 1550 488 aa, chain + ## HITS:1 COG:BH0995 KEGG:ns NR:ns ## COG: BH0995 COG1012 # Protein_GI_number: 15613558 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Bacillus halodurans # 16 487 4 467 468 582 61.0 1e-166 MTTTTSGSASECWLNYVNGQWIEADSGKTISVVNPSTLGEIATVPDSGEAETKAAIEAAH AAFQSWSTLSAYERSDILMRWYHLLMRHQEDLAETMTAEQGKPLSEAKGEITYAASFISW YAEEAKRLYGDIIPATSSGKRMFVLRQPVGVVAAITPWNFPAAMITRKVGPALAAGCTCI VKPAEQTPLTALYMAKLAEEAGIPAGVLNIVTGEASVIGDTLFADSRVAKVTFTGSTEVG KHIMRASADTMKKISLELGGHAPVIVLDDADVELAAEQTLLSKFRNAGQTCVCANRIYVQ KGIRAAFENLLADKIRALKVGDGMDPDSAIGPVIDEDGLNKIQKHVSDAVERGATVITGG SRKEVPEHAGYFFEPTLLTGVTGSMLIMKEETFGPVAPIVEFTDPDDAVRQANDSPFGLA SYVFTSNINHAIRLAERLQYGIVGVNDGLPSSAQAPFGGMKESGLGREGGKYGIEEYVEI KYISLGLY >gi|333607711|gb|AFDH01000031.1| GENE 139 194261 - 194752 446 163 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVTDTVAGLLLFGVVAWKSYQARKAFKKVGIVVAKGPMYPLEFWIFAAGMIILFWIFGKL SLWFAAFSGFVFYLEWLKRFYLGTEGLKAGTKFYERSRLITYEVAEGNGPVIDIIVAGAM DPVRLSCKERDFAILKEQIVRYFEEKPDGPQTADTGRGKISAV >gi|333607711|gb|AFDH01000031.1| GENE 140 194874 - 195827 710 317 aa, chain - ## HITS:1 COG:PA3301 KEGG:ns NR:ns ## COG: PA3301 COG2267 # Protein_GI_number: 15598497 # Func_class: I Lipid transport and metabolism # Function: Lysophospholipase # Organism: Pseudomonas aeruginosa # 1 307 1 303 316 223 39.0 5e-58 MKETHFHLNEETEMPVFVYRWEPERGTPLRGVVQIAHGMAEHALRYKRFAEKLTARGYIV YASDHRGHGRTAAHKNDLGYPGPDGFAGMTDDMIDLGRRIHEEQGGLPLYLIGHSMGSFL SQKVMYRAPQLYEGVALLGTNGPKGAILKAGILLAKMLVSRSGDRARSRFLSHTALGSFN RPFRPNRTEFDWLSTDEAEVDKFVKDPLCGYICTTGFFKDFFIHLSDIHLKRHMRSIPKH LPVLLLAGDKDPVGGQGKGVRRLAALYRKLGLEQVDCKLYENKRHEILNEVNREEVMEDV ISWLDSSRGLIKEPVTS >gi|333607711|gb|AFDH01000031.1| GENE 141 195866 - 197173 1322 435 aa, chain - ## HITS:1 COG:BS_ytiP KEGG:ns NR:ns ## COG: BS_ytiP COG2252 # Protein_GI_number: 16080051 # Func_class: R General function prediction only # Function: Permeases # Organism: Bacillus subtilis # 8 430 2 429 432 353 48.0 5e-97 MDKAEAWFKLKERQTTIGTEVLAGCTTFMTMAFVVIVNPGILSASGMDFHAVFIATILTT IFSTLIIALAGNYPIVIAPGMGINAFFAFGVVQGAGVSWQVALGSVFLAGLLFMLISLSR HGRLLIESIPASLKYAITAGTGLFICFVGLQNAKLIVASPDTLVTIGSLHEPAALLSVIG LVLTLVLMSYRVRAALFIGMLLTAAIGWLMGLLILPDHWFAWPGTMTGTFMQMDVKGVFE QGLFAVTFTFLLISVFDTTGTLVSLAEQAGLMKNGVFPRSRSALMANAAGVTAGAVMGTS PVTTLIESGSGIAAGGRTGLTAVVTCALLAATSFLAPVVETLANLPSVTAPALIVVGYYM ITDLLHIDWKDFEESFPAFLVLVTMPLTYSVSTSIGIGFIFYIVLKAARGRFKEIHPVLY VFAALFIVQIGFFHG >gi|333607711|gb|AFDH01000031.1| GENE 142 197396 - 197617 322 73 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_4820 NR:ns ## KEGG: Pjdr2_4820 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 1 53 1 53 72 70 52.0 3e-11 MAKPVELNEVWIDRIIQSINGLEYGTVQIIIHDGRVAQIERTERKRFDNETKRSAAGADA KLHIERKASDGRG >gi|333607711|gb|AFDH01000031.1| GENE 143 197643 - 198476 888 277 aa, chain - ## HITS:1 COG:CAC3665 KEGG:ns NR:ns ## COG: CAC3665 COG1073 # Protein_GI_number: 15896898 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Clostridium acetobutylicum # 1 245 7 241 265 125 31.0 7e-29 MEHHITIPSGDLELAATLHYPTDGEGADCRGGAGKWPVVIICHGFIGNRIGVDRLFVKTA RALSSQGYMVLRFDYGGCGESTGDYGAGGLDPMIAQTRRVLDYALSLDCVDPGSVTLLGH SLGGAVALLTAASDHRVRTLVMWSAVAHPHNDIVRIVGKEAYRQLEPDKGIDYQGYLLTP AFFDSLSKHQPFEQLRKFGGDVLIAHGTADEDIPVDYAPLYQKMFWLRADGRCDLELIFQ ADHTFSNRDATFTLIGKTSAWLVDLQKRKKEWYDWMI >gi|333607711|gb|AFDH01000031.1| GENE 144 198519 - 199574 1153 351 aa, chain - ## HITS:1 COG:NMA1097 KEGG:ns NR:ns ## COG: NMA1097 COG1118 # Protein_GI_number: 15794045 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type sulfate/molybdate transport systems, ATPase component # Organism: Neisseria meningitidis Z2491 # 1 334 1 351 357 294 46.0 2e-79 MHISVRGINKSFGSYEAAKNISFDIEQGKLIGLLGPSGGGKTTILRMLAGLESPDSGEIL FHGEKVNGLMPQERHIGFVFQNYALFKHMSVYDNIAFGLQVQKRGKAEIRTRVHELLQLT GLAGLEKRLPHQLSGGQRQRVAFARALAPEPQLLLLDEPFAAIDAKVRKELRSWLREMIS RVGITTIFVTHDQEEAVEVADEIMIVNKGRIEQKGSPIDIYREPLTPFVASFIGESSPLE EAGSLIGFAEAGDASAIVRPEFVEIGLPGEISRQTASAEAVVRSTYFRGSNWQVEVESGP YRLVGYRSLELPQLEAGDHVHVLVHRLYIFDGNETRTVENALKNDPMPVHI >gi|333607711|gb|AFDH01000031.1| GENE 145 199578 - 200489 1201 303 aa, chain - ## HITS:1 COG:RSc1346 KEGG:ns NR:ns ## COG: RSc1346 COG4208 # Protein_GI_number: 17546065 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type sulfate transport system, permease component # Organism: Ralstonia solanacearum # 11 294 12 292 326 333 66.0 2e-91 MAGNVAANLSGPSSEPAKHITEPRAVQWLLIGGALLFLALLLVLPLATIFIQAFKKGTEV YLAALTQKEAWAAIRLTLTTAAIAVPLNVVFGVAAAWAITKFKFRGKNVLVTLIDLPFAI SPVIAGLMFILLFGTKGWFGPWLADHDLKIVFALPGIVLATVFITFPFVARELIPLMQAQ GTQEEEAAATLGAKGWRIFWKVTLPNIKWGLLYGIILCNARAMGEFGAVSVVSGHIRGKT NTVPLHIEILYNEYQFSAAFAVASLLVMLAVLTLIVKSLAEWKFHQSNRQQTDSGLNHIT EGS >gi|333607711|gb|AFDH01000031.1| GENE 146 200512 - 201345 923 277 aa, chain - ## HITS:1 COG:BH3128 KEGG:ns NR:ns ## COG: BH3128 COG0555 # Protein_GI_number: 15615690 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type sulfate transport system, permease component # Organism: Bacillus halodurans # 3 274 5 276 279 334 68.0 1e-91 MGRRNKTKRILPGFGLSMGFTVLYLSLLVLFPLSAVVWKTTGLTFDQFWQAVTDERVVAS YKLSFGASLAAALVNTVFGLLVAWVLVRYRFPGKRFVDALVDMPFALPTAVAGIALTSLY ADNGWIGSLLAPLGIKAAYSPLGIIIALTFIGLPFVVRTVQPVLQELEHETEEAAVSLGA SRWRTFRRVIFPQLVPALLAGFTLAFARAIGEYGSVVFISGNMPMKTEITPLLIMTKLEQ YDYAGATAIALVMLILSFVLLLVTNALQMKSNRRVSG >gi|333607711|gb|AFDH01000031.1| GENE 147 201415 - 202509 1345 364 aa, chain - ## HITS:1 COG:sbp KEGG:ns NR:ns ## COG: sbp COG1613 # Protein_GI_number: 16131755 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type sulfate transport system, periplasmic component # Organism: Escherichia coli K12 # 53 362 20 328 329 447 72.0 1e-125 MAALKSHSFKRVLGRSVSVLALTSLLTGLTACGGGNETTSTKTGTENGGSAPKSVELLNV SYDPTRELYQAYNEAFIKYWKEKKGQTVTVSQSHGGSGKQARSVIDGLEADVVTLALAYD IDQVQAAGLIDKGWETELKDNSTPYTSTIVFLVRKGNPKGIKDWDDLIKPGVSVITPNPK TSGGARWNYVAAWGYALKKNNNDEAKAKEFVTQLFKNAPVLGTGARDSTTTFVERGLGDV LIAWENEAYLSLNELGKDKFEIVTPSISVLAEPPVAVVDKNADKKGTKEVAQAYLDYLYT EEGQKIAAKNYYRPRLESVAKQYENQFKQVNLFKIDDPEFGGWAKVQKTHFADGGVFDQI YKPK >gi|333607711|gb|AFDH01000031.1| GENE 148 202840 - 203037 229 65 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNNNLTADAERVLIVYLNNDIVVENVPGEVDVDSYLDEQDYDARQVELISMGEFNERLDQ MLLHY >gi|333607711|gb|AFDH01000031.1| GENE 149 203244 - 204026 1056 260 aa, chain - ## HITS:1 COG:CAC1537 KEGG:ns NR:ns ## COG: CAC1537 COG2013 # Protein_GI_number: 15894815 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Clostridium acetobutylicum # 3 258 2 258 260 341 69.0 7e-94 MNAHEIDYIIHGNEMQYVEIELDPQESVIAEAGSMMMMEGNIGMETIFGDGSGGGGRGLM GKLMGAGKRLLTGESLFMTVYTNNGRGKEHVTFAAPYPGKIIPMDLHALGGKLICQKDSF LCAAKGVSIGIELQRKLGAGFFGGEGFIMQKLEGDGLGFVHACGSILERELQPGEVLRVD TGCFVAMTPDVQYDIEFVKGIKTAVFGGEGLFFVTVRGPGKVWLQSLPFSRLAERVMGGA IRGKEEGSVLGGLGNLFERR >gi|333607711|gb|AFDH01000031.1| GENE 150 204153 - 204632 421 159 aa, chain - ## HITS:1 COG:BH2302 KEGG:ns NR:ns ## COG: BH2302 COG1607 # Protein_GI_number: 15614865 # Func_class: I Lipid transport and metabolism # Function: Acyl-CoA hydrolase # Organism: Bacillus halodurans # 2 153 3 154 162 179 57.0 1e-45 MEAKPTSISRSIMTEVIFPLDTNYHGTVFGGKIMEYIDKIATIASMRHCRRGVVTASSDS LDFLAPVHLGEAIELEAFVSWTHRSSMEVYVRVVAENMFTGERRTTATSFITFVALDDEG RPTPVPAVIPETEREMRLYESAPTRYEARRKRKAELEAD >gi|333607711|gb|AFDH01000031.1| GENE 151 204598 - 204750 61 50 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MEREMLVGFASIWVKASFSSAGEKACKLQLPSRLYETLMFTGTDSIPRTG >gi|333607711|gb|AFDH01000031.1| GENE 152 204731 - 205912 1348 393 aa, chain - ## HITS:1 COG:BS_purT KEGG:ns NR:ns ## COG: BS_purT COG0027 # Protein_GI_number: 16077292 # Func_class: F Nucleotide transport and metabolism # Function: Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) # Organism: Bacillus subtilis # 9 390 3 384 384 531 69.0 1e-151 MFGAPLSGKSKKIMLLGSGELGKEVILEAQRLGIETIAVDRYDHAPAMQVAHRSYVIDML DRQALRELIERERPHLIVPEIEAIATQELVELEQEGYRVIPTANASRLTMDREGIRRLAA EELGLRTAKYAFADTLDELHAAVAEIGTPCVIKPIMSSSGKGQSVCRSEADIEACWNTAL EGGRAKKARVIVEAFVTFESEITLLTVRSVSGTSFCAPIGHVQKEGDYIESWQPHAMSES QIAEAEQMARTITDALGGYGIFGVELFLTREGVYFSEVSPRPHDTGMVTMATQDLSEFAL HARAILGLPIPQIRLLTPGASHTLKADRGSADFEIGGLEEALAVPDVQVRIFGKPETKPG RRMAVALAAAQDTETARAMAAEAAGKLFIRYGE >gi|333607711|gb|AFDH01000031.1| GENE 153 206049 - 208025 1488 658 aa, chain - ## HITS:1 COG:BS_yojO KEGG:ns NR:ns ## COG: BS_yojO COG4548 # Protein_GI_number: 16078998 # Func_class: P Inorganic ion transport and metabolism # Function: Nitric oxide reductase activation protein # Organism: Bacillus subtilis # 10 658 31 661 661 421 37.0 1e-117 MFVGKLNLLDNRLEAFMLMQLVDLARTFTRNGDLELQLAFHSHYEESKALLTVSQFWRDW KPAQREAGMKSDVYLRALGSAWYSGRRETEAFLESVTKSPLSRLGMELFALCEDLRLEQI CRRIRPGTSAVFEERADVYKGYFTHKFRTHLARHELADALFVSVYLWFKGADVHALYSEA GSRIGETSGEFTAPTKHVEELLRLVQPLLEEAETAETTAENARLCLLMLELLEYRLERDA ADAYFSVRPGSGTDAPLRRGERPAGKKAKRLANDDAERLSPRQDKDRRSERQSMWHRETR STAGEALRQSVERGTRTARFSGAAARPGDDTSEEAMAAARGRSAASERKSEPPPDSSAPF LPSGASAGSGDGPSGLRAAAEFQAPRRPTPAEEDAYREAIRAVEPLTRQLTRTVRLTLER KRVAPRSDLLYGRLGRRQLLRYVTDEAPRLFTKKQNPAPELDAAFSLLVDCSASMYDKME ETKLGISLVHETLRTLRIPHEVTGFWEDAERVTAEEAPNVFHTVIDFGSSSAPRSGAALL QLEPQQDNRDGFAIRHAARRLLRRPEKQRVLLVFSDGEPSAAEYQEDGILDTYEAVLECR RLGIDVISVFLASGEVHETQRTTMRNIYGRHGIVVPHTAELPEHLAPLLRKLLLRSGG >gi|333607711|gb|AFDH01000031.1| GENE 154 208028 - 208939 803 303 aa, chain - ## HITS:1 COG:BS_yojN KEGG:ns NR:ns ## COG: BS_yojN COG0714 # Protein_GI_number: 16078999 # Func_class: R General function prediction only # Function: MoxR-like ATPases # Organism: Bacillus subtilis # 2 303 6 303 304 353 58.0 2e-97 MNLTPAAMMRQWELPDRITNRLLTLRSRIESGRLAEEQLHLIGKPGFVPAQPEVLTDAII ALALGKPVLLKGPTGSGKTKLAEHLSFLTGQPMHSVNCSTDLDAEALLGFKTLSRSGEGT TIEFVPGPVITAMKAGHILYIDEVNMAKPETLPLINGVLDHRRTLTNPFTGETVTAHEDF RVIAAINEGYIGTVPLNEALKNRFVAVDVPYLQGEALLGLLTERTELRDTRLLEAFAALS ADLLALVQMGQLSDEAASVRALLDACDLAAFMPPRRAVERAIAAKLEDERERAAVRNVAE TLF >gi|333607711|gb|AFDH01000031.1| GENE 155 209004 - 209213 88 69 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MANAYKVRATCGSPSCAYAHPHDIIRAVNYESSYAMALMLNDIPSYMSCPSCGNDLHFYP FALIEELGT >gi|333607711|gb|AFDH01000031.1| GENE 156 209244 - 209447 291 67 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIKQYFAEVVLDESATLSDSLNSLVDRAENEFGTSYIEIASIVPTKPDRFTVILNLDFNR KLGEDKA >gi|333607711|gb|AFDH01000031.1| GENE 157 209444 - 209602 214 52 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKMNGYTFAELNGKEELIEEIRSLESKLQEQTGEPITLIAYEKEQAGNGERA >gi|333607711|gb|AFDH01000031.1| GENE 158 209930 - 210604 855 224 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_4965 NR:ns ## KEGG: Pjdr2_4965 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 3 94 6 97 493 79 45.0 1e-13 MKKKLAATAIGAAMVLSMGTGVLAGANLQEIKAYLNGSITVKYNGSPVQLQDEQGAVVLP ITYDGNTYLPVRSIAKTLNVAVNYDGATNTVLLGEQAEGVALAKDFEDSSYHTKDPNLTT YGGKDYKDVYFDNAKSSRSSGFMLYPKGKYQKLVLQVAATGNDIERFFVQDSKKDIKLKT TTIAIQEGLKTIEVDIAGVEELFINADIKGDGGMFIPLTTSYFK >gi|333607711|gb|AFDH01000031.1| GENE 159 210754 - 211224 552 156 aa, chain - ## HITS:1 COG:no KEGG:BBR47_21990 NR:ns ## KEGG: BBR47_21990 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 21 111 16 106 162 90 45.0 3e-17 MSVESFSAHGKISGDLLQERLETVKDLKQSELDMYALSKDKETGEHYVHYAYKHRQISGT GEEEQFHQLLPVESDDVLGILFSDQPYEYPDAWNRPFLRNGPEGFYIWFDPGYAEDTDAD EHFAREVSERLLKMKQAGKVDAEAVRKLFRELDDLK >gi|333607711|gb|AFDH01000031.1| GENE 160 211214 - 211894 759 226 aa, chain - ## HITS:1 COG:BS_yvgT KEGG:ns NR:ns ## COG: BS_yvgT COG2860 # Protein_GI_number: 16080399 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Bacillus subtilis # 1 199 1 199 202 239 65.0 3e-63 MDWMALSLIGTIAFAVSGAIVAMEEDYDILGVYVLGFVTAFGGGVVRNLLIGEKVTMLWQ QGFQFTIALAAMTLVFIFPLAWIKRWKSWESFFDAIGLAAFSIQGALYASNQGLPVSASI VAAVLTGIGGGVIRDLLAGRKPLVLRDEIYAVWAMLAGFLIGIGWPQNPLGLIILFMIVV VSRMFSVIFKWKLPRRSLRTLLQQNDVPNKQRPPALQEERREFDVS >gi|333607711|gb|AFDH01000031.1| GENE 161 211915 - 212997 1139 360 aa, chain - ## HITS:1 COG:BH2165 KEGG:ns NR:ns ## COG: BH2165 COG0673 # Protein_GI_number: 15614728 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Bacillus halodurans # 6 353 5 347 348 215 35.0 1e-55 MALNDEIRIGVIGAGNIGNVHILGLLETPGVTVAAVADVFLPLAEARAKEHQISKVYGNG EDLIHDPDIDAVVIAVSNEWHAPLAVKALQAGKHVLLEKPMAIDVKAAKEIVLAERESGK VLMISHQRRWEPLNMQVKELVQRGKLGNIYHAKTGWLRRKGIPGWGTWFTQMSKSGGGPL IDIGVHMLDLSLSLMGNPRPVSVFGATYSEFGPKRRGIGSWGKPNWSGSYDVEDLATALI KMDNGSTLTLDVSWAALTETDNQPYIHLLGTEGGATLRGSSYGKLFAEMFDKEIDVELEL PEQQTDPRLLMNMHFLECIRTGSEPMTSVMSGYTNNLILNAIYESSRTGKEVELDWDLSN >gi|333607711|gb|AFDH01000031.1| GENE 162 213266 - 214792 1317 508 aa, chain + ## HITS:1 COG:no KEGG:PPE_01022 NR:ns ## KEGG: PPE_01022 # Name: not_defined # Def: N-acyl-D-glucosamine 2-epimerase-like protein # Organism: P.polymyxa # Pathway: not_defined # 50 487 11 459 477 445 50.0 1e-123 MNSWKKHGPGPWRSKERLVQTLTLMILVTLLTHLLSAVPALAQEDLTAPSPHSKAAETKR KEAALKGPSIQVDPSFPYYQNRTPESIADELLQHGYKTVHYFVVNENDVNRTFIEALQAK GIGVWALVLGNGSYSTARFPADWPSWQMELLKPLNDGYYRFSPHSPAYVQWKKQALAKLV RDYPFDGIEVAEPYFPEWDGINRGVYGDVGPLAQKAFRDKTGLEMPDFTNASSPRYYLTD TAAYVKWVDFRVEAVNDFLNELMNGKGGVREARPGILVATWSLAIDAGPGSFDKLREWQG LDAAAMVGRVKPDIHFLQTHWPDWLKPQESLPPDYVKHYKVFADKIKAEYPDLPLGVQAD IGSALLMVKDGGWVSAFSDSVRALGYSTWTAYEYHLGGYMYKEAPVPGKAQRLSRTEVKI PFQKRIDEGSAKAEGNVTVSAGAESFTLNPGEISVDGSNLLIRSGRLPKKEFRLNLRGIK DTPGFWFYNKTQTPNVIRGDVVVDVPKH >gi|333607711|gb|AFDH01000031.1| GENE 163 214999 - 215397 333 132 aa, chain - ## HITS:1 COG:no KEGG:BCQ_4731 NR:ns ## KEGG: BCQ_4731 # Name: kapB # Def: kinase-associated lopoprotein b; sporulation initiation KinB-activator # Organism: B.cereus_Q1 # Pathway: Two-component system [PATH:bcq02020] # 8 129 36 157 159 111 47.0 8e-24 MNYRNESTASVGDLVIASYKTGEYIGRIVEPPSNIKAAVQVLAVVKHPSQGDLHNPQQGD VPFFHQRRALAYQEIALMPLSSIHAYHGNVPDYTLSLQQALERELNMLHQTEEWARRSIA ELEELHREYFPQ >gi|333607711|gb|AFDH01000031.1| GENE 164 215417 - 215779 205 120 aa, chain - ## HITS:1 COG:BH1715 KEGG:ns NR:ns ## COG: BH1715 COG0526 # Protein_GI_number: 15614278 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Bacillus halodurans # 18 107 11 100 112 69 34.0 2e-12 MQEWNDDQIKQALIEKQSFAVFFHTPFCGTCKVAGRMLDVALTIEPELPLKACNANYAGA SVQKWKISSIPCIVVVEKGIAARFIYAVKSVDYLLAELRHLTGMQHLRIVASSDFPENTP >gi|333607711|gb|AFDH01000031.1| GENE 165 215895 - 216428 484 177 aa, chain - ## HITS:1 COG:no KEGG:Bcell_2246 NR:ns ## KEGG: Bcell_2246 # Name: not_defined # Def: hypothetical protein # Organism: B.cellulosilyticus # Pathway: not_defined # 1 169 1 166 176 146 40.0 3e-34 MFDPTVYENLKVVLEGAVYDLDLSGEILVTNRSDVMDLSSLGRHYRIRFVLRGGEENMAS PWAELHLAAELEDLAAELLSRKGAEPGCALTVRFGFLVGDPSRDCPAVGSSLESIWSGRP LITQTLSYVFGSENEGWHNEVLLEFGRKVNESHLDDFEGLLEHTLLSLSELRDKHAS >gi|333607711|gb|AFDH01000031.1| GENE 166 216593 - 218209 1928 538 aa, chain - ## HITS:1 COG:BS_ykpA KEGG:ns NR:ns ## COG: BS_ykpA COG0488 # Protein_GI_number: 16078507 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Bacillus subtilis # 1 538 1 539 540 822 73.0 0 MITVTDVTLRYGKRALFEDVNIKFTPGNCYGLIGANGAGKSTFLKILSGEIEPNKGDVHI APGERMAVLKQNHYEFDETDVLKTVMMGHARLFQIMEEKDALYAKSDFSEEDGIRAGELE GEFAELDGWQAESDAAELLIGLGIPKELHDQKMKDLDGNEKVRVLLAQALFGSPNILLLD EPTNHLNLESIQWLENFLARFEGTVIVVSHDRHFLNQVCTHIADIDFSKIQMYVGNYDFW YESSQLALKLAREQNKKTEEKRKELETFIARFSANASKSKQATSRKKQLEKLTLDDIKPS NRKYPFINFKPEREAGKQLLAIDSVSKSVEGQKILDNISITVNKGDKIAFVGPDGHAKTT LFQILMGETEADEGTYTWGVTTTQAYFPKDNSQYFEGVDMNLVDWLRQYSKDQDESFIRG FLGRMLFSGEEALKKASVLSGGEKVRCMLSKMMLASANVLILDEPTNHLDLESITALNNG LIDFDGTMLFVSHDHQFIQTIANRIIEITPKGVIDRMMPYDEYLENEDVRRLREEYYA >gi|333607711|gb|AFDH01000031.1| GENE 167 218315 - 220264 2076 649 aa, chain - ## HITS:1 COG:BS_yfmR KEGG:ns NR:ns ## COG: BS_yfmR COG0488 # Protein_GI_number: 16077804 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Bacillus subtilis # 1 646 1 628 629 662 57.0 0 MSIIHAEHLVKTYGEKVLFDDISFTISEKQRIGLIGVNGTGKSSLLRILAGLETPDSGSI VHSNHFRVEYLPQQPEFDERSTVLEQVFYGETPLMKVLRDYEQALAALDSSPEDEAAQQK LMRVQARMDELDAWEAGTTAKTVLTKLGITEFGKPVGELSGGQRKRVAMARVLIQPADLL ILDEPTNHIDNETVDWLEQFLSKWKGALLLVTHDRYFLERVTSRILELDRGSIYSYEGNY TTFLEKKAERMEREASSEDKRRNLLRRELAWLHRGAKARTTKQKARVERAEELRDRKVDG PAAKLDMALAGSRLGRKVIELKQVSKGYEGRELIHDFSYIVLPDDRIGIIGRNGSGKSTL LNMLAGRLGPDSGEIERGSTVKLAYYTQESVEMDDKQRVIEYVREAAEVIRTKDGESITA AQMLERFLFPPNLQWTPIGKLSGGEKRRLYLLRTLMGEPNVLLLDEPTNDLDIQTLSILE DYLEQFPGAVITVSHDRYFLDRTADHLFSFTGEGEIEPYIGTYSEYLELKQQREASELKP DAKEKARTQASASSAPSTGTTGAVSGGERAKKKKLSFNEQKEWDTIEDRIAALEEKLERI KSDIAKAGSDYGRVQELYAEEIAAGEELEQAMERWTILSELVEEIERGK >gi|333607711|gb|AFDH01000031.1| GENE 168 220372 - 221460 1205 362 aa, chain - ## HITS:1 COG:CAC0690 KEGG:ns NR:ns ## COG: CAC0690 COG1363 # Protein_GI_number: 15893978 # Func_class: G Carbohydrate transport and metabolism # Function: Cellulase M and related proteins # Organism: Clostridium acetobutylicum # 5 341 3 339 343 343 51.0 4e-94 MEQVNRTYLLEVLDMLLQTPSPSGYTHHIMDKVKAEAEKLGYKLELTNKGCGIITIPGKR SDYTIGLSAHVDTLGAMVRSIKDNGRLRLTSVGGFMMAAIENEYCRVHTRQGLSYEGTIL TTKPSVHVFPDARDHKRVEENMEVRLDELAFNKEEVQKLGIRVGDFVSFEPRVRMLENGY VKSRHLDDKASVAALFALMDLLKNELIEPACTVKIIVTTYEEVGHGASYIPADIDELLAV DMGAMGDDLTCTEQDVSICAKDSSGPYDYAMTSQLIRLAEHSGIRHVVDVYPQYGSDASA ALRGGSNIRAALIGPGVHASHGMERTHVDAIAGTASLLLQYILHPAAAASDPEQPENPVS PV >gi|333607711|gb|AFDH01000031.1| GENE 169 222133 - 222951 554 272 aa, chain + ## HITS:1 COG:BS_ykwD KEGG:ns NR:ns ## COG: BS_ykwD COG2340 # Protein_GI_number: 16078461 # Func_class: S Function unknown # Function: Uncharacterized protein with SCP/PR1 domains # Organism: Bacillus subtilis # 4 271 7 256 257 145 39.0 8e-35 MKSIKKATLVGVFALTSVFGAGAASASAEPCNVSGGDTLATLSNKYGIDLASLLTSNPQL KNPNFIWKGMQIVVPAAPPAGEKPSAEAPAAPTAPEKKPEAQKPSAPPAKPSKPAPETQA PVSTPKPTTKPSAPVATPSPKPAEKPAASQSEFADQVVTLVNQERAKAGLKPLASDSALA AMALDKAKDMYTNNYFDHNSPTYGSPFDMMKSYGISYTYAGENIAKGQRTPQDVMNSWMN SQGHRENILSPNFTKIGVAYYNGEWVQEFIAN >gi|333607711|gb|AFDH01000031.1| GENE 170 223466 - 223756 418 96 aa, chain - ## HITS:1 COG:no KEGG:PPSC2_c1864 NR:ns ## KEGG: PPSC2_c1864 # Name: not_defined # Def: stress responsive alpha-beta barrel domain-containing protein # Organism: P.polymyxa_SC2 # Pathway: not_defined # 1 95 1 94 95 105 57.0 8e-22 MITHVVFFKLKDRSPESVEQARAKLQNMEGKISELLHIEVGADVIHSERSYDLALITKFN SLEDLKAYNVHPVHQDVLAYMGEAKDGVAPCVDFES >gi|333607711|gb|AFDH01000031.1| GENE 171 223830 - 225887 679 685 aa, chain - ## HITS:1 COG:CAC0036 KEGG:ns NR:ns ## COG: CAC0036 COG1716 # Protein_GI_number: 15893334 # Func_class: T Signal transduction mechanisms # Function: FOG: FHA domain # Organism: Clostridium acetobutylicum # 595 682 378 465 468 70 37.0 1e-11 MEIFGLQASIRLSQGRWLEVGLEEELNIERLAPVQLKMLAENPIPRVLPLKVEEINSHVR LLYNLASRRSLAAILKERSPDPAGCLQLLHEAAACVSDSGNFMLNEAQFVVDKNYMYIES GWADVSLLCLPIKEIPVGFASVMWSALVRDLGSRLIAKDRGSLERLAKYCERENFSVREF KRQIYLEISGCGLSVKEDSGKGGVESDSIVRSSTVPDSKMQDPAQFCERSIYAFSVLQKP GEGSPVTEPLQLHKESNDVGEGLLRRESAHMPRDRIGSPQKLMGENRSNPKPRGAAEKFI RRRQQIAADGSDYPVPVEGNYTASASAALNYAYPVSPDKAASAASPDLTPATFAVGSSAA ASGAVTRFSASAEVNPTGTGEPVLRTAASRTASPPTAAPIAAAQTQPAAAVGQTAPQPAA AVPLSRRQTGSGVQAAGHPPQPHAAPQAALAGAAASAGPLPGSRGKILALGGAFLIIGMI WNAYFSAPGPPLLYISSGATLLVLDAAYVLLAIGLPGRRSSQLKEAAPSGSSPYPPAAEQ EPVSLEQYYAGLGERTTLLAPPLSAVNNADETVYLGAESAPPHAKFRHPVLEVMREGRKE TILLDTDSFIIGRGEGDADYIEDVLGISRIHAQFLRTPGGYAVKDLGSRNGTFLNDGMLV PYQMVALKDGDVVRIIHTEFTFRFG >gi|333607711|gb|AFDH01000031.1| GENE 172 225922 - 226437 434 171 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_5229 NR:ns ## KEGG: GYMC10_5229 # Name: not_defined # Def: peptidase A24A prepilin type IV # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 5 164 7 165 170 124 46.0 1e-27 MEELLLSLLILAAFVTDVRKSIIPNVLTAAGAGTGMMYHLLTNGWSGLVFSLAGCTTGFI ALFILYAAGALGAGDVKLFGAIGALTGGVYVFTCALYSLLFAGAIGLCLLLARKEGVKRL GRLFGGLALCLFLKDLSFWKSMKQSDQLRFPFMYAVLPGVLAAYWYGNLAF >gi|333607711|gb|AFDH01000031.1| GENE 173 226452 - 227090 488 212 aa, chain - ## HITS:1 COG:no KEGG:PPE_01263 NR:ns ## KEGG: PPE_01263 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 5 211 21 217 331 111 31.0 2e-23 MRMFRKSEQGGMVLEAALILPMFVGFIVALIVCIQIAVADMALRSAVSESTKVLAAGLYP AEVLYRQGEQSFDQTALASGAQNVVDTLQNLREQAAQAGEFIDSVEAYIPDPVVGLLAWV RQAGESGVDGAKEAASSALRDAMKPVVYSFADKRILKKDRFRIDGVTLPSLTNRERAYLG FEVTYDFPLAVPFFNRTLVLKKKALERVWLGA >gi|333607711|gb|AFDH01000031.1| GENE 174 227127 - 229391 1021 754 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_5231 NR:ns ## KEGG: GYMC10_5231 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 2 754 14 743 743 207 28.0 2e-51 MRSFYNSETGTVSIYLIIILVPIFFLQAVLIDFARVKAAEREADTAARAAVRSVLSAFDT ELQKYGLFGLTGEPESSKSLFSTIFKENLSGSSSGGFYKMLDTKPEEGRASLTSLYTLAN HPVFKEQILEHMKYTAPIEFVLEITDKLQKPGAVKTLANGSAYAKEAEKIEKLLAKREES LDRAWAETVKLKEELNGRHHTYRARITELNRLSELIGLNTADGVRSQIKTLEEQIRSLSD SISSLNGSLAAAAAAGPEAAAALQGMMDRIRSLQDQLTELQSRLSDLKTLLENIVKYTAL LAATKLEIVSDDEKVQNLQKSVQELLGEAKKANDELNTELKRVSSATGNELKAFEAFKGL KLLSEDDFRTYQTGIASSAALFSGFRSGIGSTNLFTNANAQKIHAANDAYQAQMDETYKK QLVIETERTKRNETIRKEKEKQRSKIQEVLNRAKQAMGDCGTDQTAGPVSTFYETLEEKG EDGLYRKYMTLNESPSNAGGSPVYDLEGKPDTEIQHAMSLLERLGQTGESIRNELFINEY ALSQFNYRTYGRELDGSGQPKPLHALSEPSGHKLPGQEVEYLLYGFNTCAKNMSSAYGEM FAFRFAVRIVEELMDPKNELLQAGSPLLVLLASAAEAAVKALADMDSLTEGKAVPISSKL TNPLFTFTYKDYLRIFLLLHSSDSNLLARLQSLIELNTERTLDHAVTYIQGSAESSVSLW FLPGLMKLMNGTGISSCEVRENRCRFISRADLAY >gi|333607711|gb|AFDH01000031.1| GENE 175 229430 - 230392 632 320 aa, chain - ## HITS:1 COG:no KEGG:PPSC2_c1354 NR:ns ## KEGG: PPSC2_c1354 # Name: not_defined # Def: TadE family protein # Organism: P.polymyxa_SC2 # Pathway: not_defined # 1 206 5 208 222 152 42.0 1e-35 MFRSQSGNFTLEGTLLFPVVILITLTLIIFGMFVYNRVALQQQAGVASERAAFSWNNSRK DPVTGAFTPEAGDGLYWRLTQDGILGIFGYSGKSSVVQVPGTSDGSGPAGKLSRAAALLP PGVHGSMSYVNHIWERKVSAELEEPFRTRSFLPGNVIRDQVKGQGASHVVDPVELIRTVD LTRSYIPAIKNRITASKAREVLTEPAPEAIPPTSVITSEAQASAYIRKLVSGRKTEVITP EGDKRTIDALDAGGTAHLAFYTFNEKNLKEQMRKDVLLKKEGTQVKGIVWHFFKTKSGKA PSQAIQRELAQNGISVILHE >gi|333607711|gb|AFDH01000031.1| GENE 176 230436 - 230645 293 69 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|167463708|ref|ZP_02328797.1| ## NR: gi|167463708|ref|ZP_02328797.1| hypothetical protein Plarl_14324 [Paenibacillus larvae subsp. larvae BRL-230010] # 11 62 10 61 72 65 57.0 2e-09 MKSRLQMSMIRFWNDEEGLGTLEILLIVAVLIAVAVIFRKWIIKWFNELIGKADTEFNNS KSDDAIKAP >gi|333607711|gb|AFDH01000031.1| GENE 177 230685 - 231554 781 289 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_5234 NR:ns ## KEGG: GYMC10_5234 # Name: not_defined # Def: type II secretion system F domain protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 37 288 39 289 290 185 41.0 3e-45 MLVLLCLSMGSFLVLLLLYVLGSRRFKDVRSDYPCTLHMKKLAPAGLYAVERFKTMERFP DAGVRIMQRIRSLYGHKDTLVMAKLVMGDMLLTSLLVLLLSGLLGIAGGGDPAVALLGLL GAGLTPLLMLRQLDQQIRLRKRRIVMELPEVLSKMILLINAGETVQKALIRSVDISRVAA SPLHAEFGQAVRELEMNVSLPKVLEDLSKRCAMQEMALFTTTILLNYRRGGEDFLVALRS LAKELWDRRKAESRKLGEEASSKLVFPMVAIFLVVMIIVASPAVLSING >gi|333607711|gb|AFDH01000031.1| GENE 178 231559 - 232488 434 309 aa, chain - ## HITS:1 COG:CC2941 KEGG:ns NR:ns ## COG: CC2941 COG4965 # Protein_GI_number: 16127171 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Flp pilus assembly protein TadB # Organism: Caulobacter vibrioides # 38 301 58 311 325 72 24.0 1e-12 MLPVAACLAGLVLWLVLLTQDRRKRRKLAKRGDNGGHEGSRQQSPKANPPPERKTAARPA PAGLTDYGSYRMTVREMLLTSGLFGLVFAGIAYIFYKEPLLALLCALLGLLVPRFRKVWL ITGRKAKLILQFKQALYCMSTSLTAGRSVENSFREAWKDLQLLYPDPNCLIVREFEIIVR RLDNGEPIEHAVADFAVRAQCDDITNFSDVFTTCKRTGGNLVEVIRRTAGIIGDKLDIEQ DISVMVAQKKLESRVLLAAPVCMVAVLSFSSPDYMAPLYSGAGPLIMTGGLLALGGCLWL TGKIMDIKV >gi|333607711|gb|AFDH01000031.1| GENE 179 232488 - 233744 951 418 aa, chain - ## HITS:1 COG:RSc0652 KEGG:ns NR:ns ## COG: RSc0652 COG4962 # Protein_GI_number: 17545371 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Flp pilus assembly protein, ATPase CpaF # Organism: Ralstonia solanacearum # 27 408 63 442 453 313 44.0 4e-85 MNEEWVRTFKEAVNARLDPTQSTSDEELMELIEEVVLRETGDGRLTAGEKWEMVQRIFHS YRGLDILQPLIDDASVTEIMINSHRDIFIERDGRVSRNEARFESREKLEDIIQAIVAKVN RTVNEMSPIVDARLQDGSRVNVVLPPVALQGPTMTIRKFPAQPLTMSDLIAVGALTQEAA ELLGVFVKAKYNIFIGGGTGSGKTTFLNALSQGIPADERIITIEDSAELQIRTVPNLVSL ETRNANTEGKGGIGIRDLIRSSLRMRPNRIIVGEVRGAEALDMLAAMNTGHDGSFSTGHS NSTADMLSRLEMMVLSAADLPVEVVRKQISSAIDLMVHLSRMRDGSRKVVEISELAGLTN GEILLNPLFRFEDQGEDENGRVKGKLIYTGNPLVHGWKSQMAGVELPDWIAREKEAAS >gi|333607711|gb|AFDH01000031.1| GENE 180 233741 - 234850 637 369 aa, chain - ## HITS:1 COG:CAC0037 KEGG:ns NR:ns ## COG: CAC0037 COG1192 # Protein_GI_number: 15893335 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Clostridium acetobutylicum # 21 311 27 304 361 77 21.0 3e-14 MIGPDKEFASAMERFIREGEYRDRLDIRSVTHCEHAGTFVEQNRGEPLLILHAESIADEE VIRWLGEGHNGLVYRFSEIPERTDLPAGNRIYRYQPFRTMLRDLLLRAAEQTGGTGLGRT GFRSGRTSVLALYSAFGGSGKSVLALNMAAQLAAQGKKVLYMSLEAVSSSALLMKDGPPD SFSRLLYAWRKSPDRTADYADLLQCRHPAYGFDYLAPLPNIREADELQAEDVSGLVRHIA DSGICDVLVLDLDSAVQPRTLGALQASDIVVWLVTQDAHALYKTRKVQDAMKSIWSMESC ASKSLFVLNKYTGGDFGLAKEYDVAIFETLPYIPAWKSVSDPADWLGEPVFAAQVGHMLR RFSEGAEAL >gi|333607711|gb|AFDH01000031.1| GENE 181 234881 - 234976 56 31 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTRQTKWRIALAAGVSGAVLILGGIVQWNGW >gi|333607711|gb|AFDH01000031.1| GENE 182 235213 - 235683 355 156 aa, chain + ## HITS:1 COG:BS_ytaB KEGG:ns NR:ns ## COG: BS_ytaB COG3476 # Protein_GI_number: 16080145 # Func_class: T Signal transduction mechanisms # Function: Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) # Organism: Bacillus subtilis # 10 154 12 154 155 78 35.0 6e-15 MFYPFMLAAVVTYGLFLLSAALFPADIRWYSSVKKPAWAPSGQLIVSARGFMHACMAASV ALVYVKTGGFQNVGIAWIFVVILHYLAGQAYGFFLFKAKSFGLALADSMIAALTGWWMLI LTAPLSKESAWLLLPYLVWGCLTTLCTWIIRMMNTE >gi|333607711|gb|AFDH01000031.1| GENE 183 235695 - 236741 961 348 aa, chain - ## HITS:1 COG:PM0568 KEGG:ns NR:ns ## COG: PM0568 COG2933 # Protein_GI_number: 15602433 # Func_class: R General function prediction only # Function: Predicted SAM-dependent methyltransferase # Organism: Pasteurella multocida # 155 348 165 362 365 83 34.0 7e-16 MTEHDSTTNTARLIGTANRGFAQHAQEEIRRLIPGVKFRTLVPTETFLAEAPGSWDEISA AIRAQEPIFLRHMQPVQGERALSGTDEDILAAAELASELGRLHAGSSSTVQVRMADGTEV PYGASDVRAACEIAMGEATGAETLVRHADKILSVYVGHQAVYAGVSAPEENLSDWSGGAI RFQREENQVSRAKFKLLEAERKFHLHFADFRKAVDVGAAPGGWTSLLLERGLHVTAIDPA KMHPSLIKHPRLTYHGKNAADVKLRQDEFDLLVCDMSWSPRQMSRLILDLLPALRSGGTA IITAKLMHKKPFQTVKELKQDFEGQLELRQAKQLFHNREELTLYFVKK >gi|333607711|gb|AFDH01000031.1| GENE 184 236745 - 237509 233 254 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 226 1 226 245 94 27 4e-18 MIHLTDIHFIREERHILQDVSFHAEKGEHWVLLGKNGSGKTTLLELMNGYQFPSRGKVEV LGNRYGQVDVREVRKRIGYISQSLFEKMNLADTVWEAVATGEYAYLRFYQEIPEDVKKKA IGMLERIGLPHVAMQSIGTLSQGERKKVMLARSMMQKPELLIMDEPCSGLDLYEREKLLA AIREFSDQEMTVLYVTHHIEEIIPMFTHVALIEQGRIIAAGPKEEVLTPEHLYQAFQVPL EVEWFRNRPWIKVL >gi|333607711|gb|AFDH01000031.1| GENE 185 237551 - 237883 215 110 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_2635 NR:ns ## KEGG: Pjdr2_2635 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 3 110 2 110 111 115 49.0 5e-25 MKIHVFLDDQRRCPAGFTLARNVEECRLLLQECEVDILSLDYDLGWDESGWDIVAWMIGT GTFPARIYLHTSSLEGLNRMYQALYASVPSATSLHPGPPPAGLLAELAGG >gi|333607711|gb|AFDH01000031.1| GENE 186 237883 - 238755 757 290 aa, chain - ## HITS:1 COG:CPn0732 KEGG:ns NR:ns ## COG: CPn0732 COG0648 # Protein_GI_number: 15618642 # Func_class: L Replication, recombination and repair # Function: Endonuclease IV # Organism: Chlamydophila pneumoniae CWL029 # 11 280 12 286 293 130 34.0 2e-30 MARKKKKDLHVGAHISTRKGFYQAAVTASAIGAGAFQYFPKNPRSLILKTNIDWDDARRC AEYSRENGLLSIGHAPYPVNPAVADGRQDVMVEAMLNALEIVDACGSVGLVVHFGKFSGK DPLQGYKNIIQCTNKTLSQWRGSALLLLENQAGSGSQMGTTMEELARIRQLSEYPDKIGF CLDTCHAFAAGLWHGDDWDKVEKRGGELGYFDHLKAVHLNDSLYPHGSGKDRHANIGDGY IGLEGFRSLLASDTVRGIPLVLETGSGPDGTHRKEIALVKQTAGAAGKES >gi|333607711|gb|AFDH01000031.1| GENE 187 238780 - 239589 662 269 aa, chain - ## HITS:1 COG:lin1599 KEGG:ns NR:ns ## COG: lin1599 COG0266 # Protein_GI_number: 16800667 # Func_class: L Replication, recombination and repair # Function: Formamidopyrimidine-DNA glycosylase # Organism: Listeria innocua # 1 268 1 272 273 156 35.0 5e-38 MPEWPEMEHYRQELNKRIQNRTISGITVNRPKSLNVPEEEFRAAVLGAVVERVDRRAKQL VFVLSGERYLLLHLMLGGMMVLGTEADKPDRTTQIELHFGETALYFIGLRLGYLHLYGKQ GLEAELASLGPEPFDADLTAARFADMLKTGKGNLKTCLTDQHWLAGIGNCYSDEICFASG LLPSRRPAALDEHEAARLYTSMRSVLTEALRAGGYMEMPLYDGDERTGGFNELCRVYDRG DEPCVRCGNPIVFQTLSSRKCFFCGNCQT >gi|333607711|gb|AFDH01000031.1| GENE 188 240341 - 240793 31 150 aa, chain - ## HITS:1 COG:SMa2267 KEGG:ns NR:ns ## COG: SMa2267 COG0346 # Protein_GI_number: 16263674 # Func_class: E Amino acid transport and metabolism # Function: Lactoylglutathione lyase and related lyases # Organism: Sinorhizobium meliloti # 6 148 44 186 186 223 75.0 1e-58 MEKNKLLRMDNVGIVVESLDNAISFFEEIGLKLEGRATVEGEWAGRVTGLGSQCVEIAMM VTPDGHSRIELSRFLTPPTISDHRTAPVNALGYLRVMFTVEDIDEMVSRLTKYGAQLVGE VVQYEDSYRLCYIRGNEGLLIGLAEQLGNK >gi|333607711|gb|AFDH01000031.1| GENE 189 241087 - 242790 1146 567 aa, chain - ## HITS:1 COG:BS_yprB KEGG:ns NR:ns ## COG: BS_yprB COG3359 # Protein_GI_number: 16079279 # Func_class: L Replication, recombination and repair # Function: Predicted exonuclease # Organism: Bacillus subtilis # 111 514 18 410 413 184 33.0 5e-46 MSGLRDRLARHLKPGKPADKAAAAPEAGAEQRQAELTPKQAQQGAAEGGGLAACPLSESA TEPAVDSAAGPAREPAAWPAVAGNAPAGGHGYAGHAASGSPGDARPGSGQEGEPAAAAAP APAHPEAAAWAKLGAELYEFPAGSFVRRVCTYPMDAYHGRYRLDALHEHVREFGAFHPEA EPVDAEGLLFFDTETTGLGVGAGNVAFLVGIGYYEAGRFVVEQLFIRHPAEERAMLAYLE EKMERFTHIVSYNGRTFDWPILQNRFILNRMRPDIDRLLHLDLLHPSRSLWKHSMPSVRL GKVEEAQLGYAREDDVSGAFAPELYVLYLAEGKTDVLRGVFVHNERDIVSLAALSALITR YLADEEPLEPKSPGDLFRLGQWLLKMNRLPSAEKILELGFSRLQEQGEEGHTVSADLLLR YAAYYKKAGVRDRAVELWTRLIRQAGSAAAAPVEAYIELAMHYEHGCKDYALALELSREA LDVLRQRRRLLRRSEKAADEERRIAHRIERLQRKLRDCGKSVSERKASAKAAIPSKPPGQ ARSAKPSGKPRPAYAADSLFDVSRNPG >gi|333607711|gb|AFDH01000031.1| GENE 190 243045 - 243518 397 157 aa, chain - ## HITS:1 COG:lin0633 KEGG:ns NR:ns ## COG: lin0633 COG0454 # Protein_GI_number: 16799708 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Listeria innocua # 7 155 1 143 143 101 38.0 7e-22 MVALEPMLPEQFNEWLQLSVKEYAESKTKAGNVAAEKALEDSAREFKELLPDGLNTTDSY IFNATDQESNQIVGTLWIKIRNEQQEVFIYGIRMSEDFRGKGFGKQTLQALEAFIKERGF PLKISLHVFGDNEIALNLYRSAGFEATNIRMSKVISG >gi|333607711|gb|AFDH01000031.1| GENE 191 243571 - 245817 1838 748 aa, chain - ## HITS:1 COG:BS_yprA KEGG:ns NR:ns ## COG: BS_yprA COG1205 # Protein_GI_number: 16079280 # Func_class: R General function prediction only # Function: Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster # Organism: Bacillus subtilis # 1 747 1 747 749 1305 82.0 0 MRKKQLAELIQELRTDENIVNWHEIEPQEAKTKAIPGSVDTRIKSALAKRGISELYTHQH TAYETVHTGQNIVAVTPTASGKTLCYNLPVLQAIADDDTSRALYLFPTKALAQDQKSELN EIIGEMGIDIKSYTYDGDTSPAIRQIVRKAGHIVITNPDMLHSAILPHHTKWVSLFENLK YIVIDELHTYRGVFGSHVANVIRRLKRICKFYGSDPVFICTSATIANPKELAEQLTGSPM RLIDDNGAPRGRKHFVFYNPPVVNKPLNIRRSAAAEANNLAKQFLKNKIQTIVFARSRVR VEIILSRIQELVKNELGTKSIRGYRGGYLPKQRREIERGLRAGEILGVVSTNALELGVDI GQLQVCIMTGYPGSIASTWQQAGRAGRRHGEALIVMVASSTPIDQYVVQNPDYFFDRTPE AARINPENLIILVDHLKCAAYELPFKETEEFGPLEVAEIMEFLVEERVLHHNGDTFYWAS QSFPANEISLRSASQENVVIVDQSDVANVRIIGEMDRFSAMTLLHDEAIYLHEGVQYQVE KLDWEHKKAYVREVDVEYYTDANLAIQLKVLEIDKTSDRDRSSLNFGDVTINAIPTIFKK IKLTTGENIGSGPIHLPEEELHTSAAWVELKEPNLEVGTKALEQILWGIANVMKHIVPVL VMCDRNDVHVVSQIKANHTGLPTIFLYDHYPGGIGLAEEVYTRFDEVRKAAKNLIQKCPC EDGCPSCIGSEIEGIHAKRTSLQLLDQF >gi|333607711|gb|AFDH01000031.1| GENE 192 245862 - 246005 187 47 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MMQGAKLLDEAMGRDDLALASGAGVVLHESPYKNWGFFSFARGAYNK >gi|333607711|gb|AFDH01000031.1| GENE 193 246379 - 246702 79 107 aa, chain + ## HITS:1 COG:no KEGG:BPUM_2690 NR:ns ## KEGG: BPUM_2690 # Name: not_defined # Def: phytoene dehydrogenase (EC:1.14.99.-) # Organism: B.pumilus # Pathway: not_defined # 5 78 414 487 493 70 44.0 3e-11 MSVNTEAKRIFHTGDLAELSGSMYGALYRRAYHGLKPAFFRPSIADRRIQGLYYAGGTTH PGGGTPMAALSGMLAAEADPAAIRSVTFTRDPTNRHNHSGCHPERRL >gi|333607711|gb|AFDH01000031.1| GENE 194 246641 - 246856 351 71 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNFTSQDIIVIERALQLAIRSETKETKAEEYREVLHKLQLSSMQALQEQSVVTTAVQDGI RYDYDDSSDLV >gi|333607711|gb|AFDH01000031.1| GENE 195 246977 - 247615 523 212 aa, chain + ## HITS:1 COG:SMc02781 KEGG:ns NR:ns ## COG: SMc02781 COG0778 # Protein_GI_number: 15963766 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Sinorhizobium meliloti # 22 207 5 195 198 152 47.0 6e-37 MISCQKQTGGMVMPEHRFDVQNERHAAYDINPIFLNRWSSRAFLEKEISSEILMSLFEAA RWAPSASNLQPWRYIVARTEEEKRVFAEFISASNKTWCLKAPVLALILSHTPSPAGGVNG SHAFDAGASWSYLALEAVRQGLISHAMAGFDRESARQLLAVPDDYDIHAVVAIGYHGNAE SLSEQHLQREQPSGRRELKETLFAGRFGNAFE >gi|333607711|gb|AFDH01000031.1| GENE 196 247659 - 248633 706 324 aa, chain - ## HITS:1 COG:BS_yfhP KEGG:ns NR:ns ## COG: BS_yfhP COG1988 # Protein_GI_number: 16077928 # Func_class: R General function prediction only # Function: Predicted membrane-bound metal-dependent hydrolases # Organism: Bacillus subtilis # 1 314 1 311 327 186 34.0 4e-47 MDTGSHLLFGVTLAGLATLQPEVAHDPLLLQAVLAATIAGSHAPDLDTIARLKGYAVYLR HHRGITHSLPALLVWPALLSALAAAIFGAWEHYVLLFGWTAAAVTLHVGLDLLNAYGVQC LRPFSSRWLHLDILPLTDPFLLALHGGGALFWVAGAANPGIWMAAVYGASFIYVMARWLH KRILLRRLAGYAKDLLGAAGPLQLVPGLTWRSWQFAAETEYSYHSGTVRGSRIVLKDTYV KDRTHPVIEAAMAAEGVRAFLDFAQSSHVSWDSHGEGYVVKWREVRFWHEHKLPFGIDVT LDREMKVLSEQLGWTKKAWEPPYV >gi|333607711|gb|AFDH01000031.1| GENE 197 248795 - 249022 285 75 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MAKKDNRGDNAVHLKNSIRNTEARLHESQEYLDEHADEISATEQAALEAKNERRRQSVRG FKSELQDEAKFDTTE Prediction of potential genes in microbial genomes Time: Sun Jul 17 08:16:24 2011 Seq name: gi|333607701|gb|AFDH01000032.1| Paenibacillus sp. HGF7 contig00237, whole genome shotgun sequence Length of sequence - 12199 bp Number of predicted genes - 9, with homology - 9 Number of transcription units - 4, operones - 2 average op.length - 3.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 3809 3415 ## Geob_2704 cytochrome c family protein + Term 3854 - 3889 6.0 + Prom 3941 - 4000 2.9 2 2 Op 1 40/0.000 + CDS 4038 - 4694 903 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 3 2 Op 2 . + CDS 4698 - 6137 1118 ## COG0642 Signal transduction histidine kinase 4 2 Op 3 . + CDS 6134 - 6886 538 ## gi|315646888|ref|ZP_07900003.1| hypothetical protein PVOR_16004 + Term 6902 - 6935 5.2 + Prom 6937 - 6996 3.2 5 3 Op 1 . + CDS 7136 - 7792 526 ## COG0860 N-acetylmuramoyl-L-alanine amidase 6 3 Op 2 35/0.000 + CDS 7823 - 9223 908 ## COG1653 ABC-type sugar transport system, periplasmic component 7 3 Op 3 38/0.000 + CDS 9316 - 10137 780 ## COG1175 ABC-type sugar transport systems, permease components 8 3 Op 4 . + CDS 10158 - 10949 425 ## COG0395 ABC-type sugar transport system, permease component 9 4 Tu 1 . + CDS 11077 - 12199 896 ## Pjdr2_3137 efflux transporter, RND family, MFP subunit Predicted protein(s) >gi|333607701|gb|AFDH01000032.1| GENE 1 3 - 3809 3415 1268 aa, chain + ## HITS:1 COG:no KEGG:Geob_2704 NR:ns ## KEGG: Geob_2704 # Name: not_defined # Def: cytochrome c family protein # Organism: Geobacter_FRC-32 # Pathway: not_defined # 1 835 328 1178 2104 371 42.0 1e-100 VKVNGNAAVSGSPSPVSLNVGANTITVLVTAQDGTTQKSYTITVTRAAPLSGNADLSNLV LSGATLNPGFASGTTTYTSSVAYGVTTLDVTPTVADSHAAVTVNGHTVASGTPSSVPLNV GPNTVTLLVTAENSTTKTYTITVTRAAGSNNANLSGITLSGGATLSPVFAGGTTLYTVDV PNSVFGLDVTPSVADGTATLKVNGTAVASGTPVPVSLNVGSNTVTLLVTAQDGTPKTYTL TINRAPSDNALLNNLTLSAGTLSPVFASGTTSYTAQVATGVSSIDVTPVVADGTATMTMN GQSVPSGTAVPMSLNVGDNTVTVIVTAQDGRTSETYTVTVKRAAPLSGNADLSSLALSAG TLNPAFAAGTTAYTASVANAVSTVDVTPAVADSTASVKVDGTPVTSGTASAVSLNVGSNT VEVQVTAQNGSVKTYMLTITRAASGNADLSGISLSEGTLTPAFDPAQISYTAAVPNASAG IDITAVTADVAASITVNGDAVVSGTPKPVSLNVGDNPITIVVKAADNTLKTYTVTVTRAA SSNADLSALTLSKGTLTPAFAAGTKLYTATVASDVYDLDLAAQLADLTATMTIAGNPAAS GQTVNIPLHVGANPVTIVVTAQDGTTQSYTVTINRQAPPSSNALLSGLKISPGTLNPVFA GTQTSYTADVAHDITEITVTPAAADSTASVSVNGHVLSAGGSEIVPLLTGANTITVQVTA QDGTKNSYVIIVTRAVPPSGNADLSGLALSAGTLTTAFAPGVTAYTASVKNSVTEVTVTP TAADATASVSVNGVSVPAGSGRQIALSVGANPVTVVVTAQNGTAKTYTVTFTRESSGGGG GGGGGSTERPIDGRIEVVSSSGEVLNESFTKLIGDNLTMLADIYSADGATLFKQNVSVNT SGKFTLYSLSAGTYKMILSLTAPNGEKLAGTAGTLTVNSDTAVFRTQKIDPFGTVRDSVT GAALAGVKVTLYWADTEKNRSAGKIAGTPVSLPELAKMLPGQNKNAQTTSSDGRYGWLVY PDGAYYLIAEKDGYETYDSRSDRGSGIVAKDFTSLKFDIALKPSGAYHEHKPYMEGYPDG TFQPGKGISRAELAAILARLFANETYAAVQNPFADVPATHWAFQYVTAVFGGKLMDGYPD GKFYPERILTRAEMATILVKLRQLPGVQGTSAFTDLQGHWAAENIRKAEKAGLLSGFEDG TFRPDQALTRAQAVVIFNKLLDRNPDSVPAGTPQAWSDVPAGFWGYKDVMEASVYHEYKT ANGREVWK >gi|333607701|gb|AFDH01000032.1| GENE 2 4038 - 4694 903 218 aa, chain + ## HITS:1 COG:CAC1506 KEGG:ns NR:ns ## COG: CAC1506 COG0745 # Protein_GI_number: 15894784 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Clostridium acetobutylicum # 5 218 4 217 217 226 53.0 2e-59 MQKKILIVEDDIHISNIIKMNLNIVNYATVEVYDGLSALDAVKQDKFDLILLDVMIPKLD GFALMEKIQSCGIPVIFLTAKNSVYDKVNGLRLGADDYMVKPFEAIELLARIETVLRRYG KEERVIEFQNLQADLNKREVTLQGEPVELTPKEYDLLIVLLRNKNIALTREQFIDKIWGS DYYGETRTVDMHIKSLRKKLHLQDHIKTIYKIGYRLED >gi|333607701|gb|AFDH01000032.1| GENE 3 4698 - 6137 1118 479 aa, chain + ## HITS:1 COG:CAC1507 KEGG:ns NR:ns ## COG: CAC1507 COG0642 # Protein_GI_number: 15894785 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Clostridium acetobutylicum # 1 467 1 472 473 312 38.0 9e-85 MKFWQKIYLFSILVFVFIFNAASVMVIERSHGKMLGQEINGALSQNMSIHSSVDAIVPIL RIYDSIDYEKTVLTNMANEFVAKNSDQRIYLEILDDTNRVIFSNNDFKMPEHREELDKLA MDEIHYILRDIGNRTLLFTSNHTEINHKNYVFTYTKDVTPLYQDRMDQYGFFIKVDIAAC LLYMLIMFFVSRGLTKPIDRLNRTARVIAQGGFSERVRLKSKDEIGVLAQNFNEMASAVE EKINDLKRHNEEKQRFIDNFTHELKTPLTSIIGYANFLRTTKYNEALYLDGLNVIYSEGK RLESLSMKLMDLIVLQEDHFQLEEHDLGTVVAEIEPALVMMAKERRVTIVTDLEEGKLRL EKDLIKILIFNLVDNALKASAEQQSITIRTYWRDNRCILEVMDQGIGIAEEHRDKIFEPF YMADKSRTRNSNGAGLGLAICQSVAGIHHAVIEVNSLENKGTTIRVIFERTNPEGGMNP >gi|333607701|gb|AFDH01000032.1| GENE 4 6134 - 6886 538 250 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315646888|ref|ZP_07900003.1| ## NR: gi|315646888|ref|ZP_07900003.1| hypothetical protein PVOR_16004 [Paenibacillus vortex V453] hypothetical protein PVOR_16004 [Paenibacillus vortex V453] # 1 250 1 247 255 192 44.0 1e-47 MNKLILIILCALFLGLTTGCEGFFNTVKKDTVLVKKITREHKTGEVKYEGVLAQDTVKTL SLNAVNKTYNEKLKLEEARFELMAVDRKKLEDLLNKTEYGVKPMLDKNQKLKIDSETELN KVPGGLFYVTLTHIADPSEVYELVLNARDGEVLKVSSDSSKPAPVEKEPSVIQDDGLEIA NRFIQAKGAYVLSDLIPEVKTVRKGVAAEVYYKSKETQSLVYSVRVNFRTNQVIGFSKDI MAILGYFSES >gi|333607701|gb|AFDH01000032.1| GENE 5 7136 - 7792 526 218 aa, chain + ## HITS:1 COG:alr0092 KEGG:ns NR:ns ## COG: alr0092 COG0860 # Protein_GI_number: 17227588 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: N-acetylmuramoyl-L-alanine amidase # Organism: Nostoc sp. PCC 7120 # 41 215 451 625 627 146 43.0 2e-35 MVWSLYKLSASLTLASASLPLTELAVSPGKNHAALQNGTSRYKIVIDPGHGGKDPGAAGA SGKQEKAYTLALSKKVFDQLRQDPVFEVFMTRTDDTFVELEDRAQIANELGADAFISIHG NTYKDPDVSGTETFYYADDSFALAQKVHEQLVKSTGFKDRGVKKEGWKVLRDSKHPAVFL EVGYLTNRDNETDMLSEAHQIRTAQAIANGIKNYFAGF >gi|333607701|gb|AFDH01000032.1| GENE 6 7823 - 9223 908 466 aa, chain + ## HITS:1 COG:CAC0662 KEGG:ns NR:ns ## COG: CAC0662 COG1653 # Protein_GI_number: 15893950 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Clostridium acetobutylicum # 76 466 61 451 451 71 22.0 3e-12 MRKVSFILIAIVLMVSASACSSRTGNGEATGTQNGDKAAQSPEGAKTEGKKSDGGPKTIV FSTFFPDDFFKEAKKKYEAKHPNITIELKYVETDDAHGEENSEKFIKTTNTALLSGKGPD LIEMDLLPIGNYVNKKLLANMSEMMDKDPTFKKDQYFTNILDNVKLNGGIYGMPLNFFTY GFIGNETAIEKSGLKIDDKNWDWSQFTDVAKELMKNGNQKTKSALYSTPEYLLNERVKEQ YAAFVDPVNKKANFETAAFTGLMKQVKSLFDDQIATEKPVQALFNNVSIVSPEYYIRDLK QSEYLSKGYEFTSKLYAKPHAEGLKAGGYFRTYKTIGINEKSTVKEEAWDFLKFMLSDEV QQGPDHAGFPMNKSVYEKRVKELLKVGKVKSDQEMGALKDKVFDITAKDIQDLDRFLSEA IYPVEFKPSKIEEIISEEAKSYFKGQKSAEAAAKLIQNRVTTFLNE >gi|333607701|gb|AFDH01000032.1| GENE 7 9316 - 10137 780 273 aa, chain + ## HITS:1 COG:CAC0665 KEGG:ns NR:ns ## COG: CAC0665 COG1175 # Protein_GI_number: 15893953 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Clostridium acetobutylicum # 2 268 21 287 289 208 41.0 1e-53 MGPSLTGFAIFYLIPFAMGFFYSFQDSTLDGSFVGFENYKELLASGSFRNAAANTFLFTF VSVPLILVLSLVVALLLNQKLFIRNWLQTAFVLPLVVPAASVVMIWQILFDWNGSVNAWL QSLHLERIDWMKSDWSVGVLAVVYSWKNIGYNIILFLAGLQSIPKDYYETADIEGAGTFR KTIHITLVYLTPTMFLVVLMSIINSFKVFRETYLIAGDYPYDRIYMLQHYMNNMFLSLDI QKLTAAASLMVGCILILVTLMLFIERRFRQFID >gi|333607701|gb|AFDH01000032.1| GENE 8 10158 - 10949 425 263 aa, chain + ## HITS:1 COG:CAC0666 KEGG:ns NR:ns ## COG: CAC0666 COG0395 # Protein_GI_number: 15893954 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Clostridium acetobutylicum # 12 256 15 244 275 166 36.0 4e-41 MTLFRKVSLTLVMGVIAAVMVFPIGVTFVNSLMTEGEIAHNYELIGKMFDTAAGGEEGFV NLKLIPDWLSFHQYMEVLVYKPVFLQMFWNSAGLVAPIIAGQVLVASMAGYAFAKLRFWG RDKLFVVYIMTMLMPFQVTLVPNYMMAQKLGLLNTASAIILPGIFSAFGVFMLRQFMLHI PNSYIEAAQMDGAGHLRIFYKIILPLIQPGIAGLIVLLFVDNWNMVEQPLIFWRIRSSSR YLYICRVSTKEPGASLLPHPYCI >gi|333607701|gb|AFDH01000032.1| GENE 9 11077 - 12199 896 374 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_3137 NR:ns ## KEGG: Pjdr2_3137 # Name: not_defined # Def: efflux transporter, RND family, MFP subunit # Organism: Paenibacillus # Pathway: not_defined # 14 374 10 368 380 204 36.0 4e-51 MELLHAGQASDRRKRKIRLFSGLFIGLLVVFTLLSNTFMALTIPKVAVVVPSRGQLVHTF KGSGVIKWRAETALTNSTGWKVKKVEAKEGDRVKKGQTLVTYDSKDAEQDILDQQAGLIK LKLTMEELQSHFIEASQNGEEKSIEDAKRAMEIHKIDLEVQQRKIQNLQEKLKKNVKLTA PFNGIVTKVNAKEGLSSESGGYDVRLSDESLGFEFELSVPVDIAAALKAGDKLEVQVDGP AAEKIEGQISEIHEPGIPDKSKTEEGSAGEGGNTAMSLPMKRLLVTLQGTGLKEGAGVRV ELNRATDPDIIVVDNKAIHEDKTGKYVFTIEEKNGPLGNAFYIRRTSITVTDSDDKASTV TQGLFEQQQIVVES Prediction of potential genes in microbial genomes Time: Sun Jul 17 08:17:30 2011 Seq name: gi|333607612|gb|AFDH01000033.1| Paenibacillus sp. HGF7 contig00106, whole genome shotgun sequence Length of sequence - 94710 bp Number of predicted genes - 88, with homology - 83 Number of transcription units - 45, operones - 16 average op.length - 3.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 220 - 930 720 ## COG2135 Uncharacterized conserved protein - Prom 959 - 1018 4.2 - Term 1247 - 1291 -0.8 2 2 Tu 1 . - CDS 1510 - 3054 1588 ## COG2206 HD-GYP domain - Prom 3091 - 3150 5.2 + Prom 3162 - 3221 5.9 3 3 Op 1 . + CDS 3265 - 3669 245 ## Pjdr2_2075 hypothetical protein + Prom 3678 - 3737 2.4 4 3 Op 2 . + CDS 3769 - 5016 1318 ## COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair 5 3 Op 3 . + CDS 5013 - 5372 363 ## PPSC2_c2386 yold-like protein + Prom 5377 - 5436 1.9 6 4 Tu 1 . + CDS 5525 - 5590 62 ## + Term 5608 - 5649 -0.2 - Term 5364 - 5388 -0.3 7 5 Tu 1 . - CDS 5587 - 5874 415 ## Pjdr2_3740 hypothetical protein - Term 6144 - 6185 5.7 8 6 Op 1 . - CDS 6205 - 8250 1999 ## COG1200 RecG-like helicase 9 6 Op 2 . - CDS 8252 - 9106 1113 ## COG1307 Uncharacterized protein conserved in bacteria 10 6 Op 3 9/0.000 - CDS 9122 - 10792 1897 ## COG1461 Predicted kinase related to dihydroxyacetone kinase - Prom 10844 - 10903 2.5 11 6 Op 4 . - CDS 10910 - 11269 386 ## COG1302 Uncharacterized protein conserved in bacteria - Prom 11312 - 11371 4.0 + Prom 11342 - 11401 7.1 12 7 Tu 1 . + CDS 11553 - 11741 297 ## PROTEIN SUPPORTED gi|169189500|ref|ZP_02849499.1| ribosomal protein L28 + Term 11755 - 11806 1.3 - Term 11747 - 11790 4.8 13 8 Tu 1 . - CDS 11823 - 11903 160 ## - Prom 12043 - 12102 5.4 - Term 12048 - 12089 6.6 14 9 Op 1 10/0.000 - CDS 12162 - 12824 710 ## COG0036 Pentose-5-phosphate-3-epimerase 15 9 Op 2 7/0.000 - CDS 12826 - 13827 829 ## COG1162 Predicted GTPases 16 9 Op 3 17/0.000 - CDS 13867 - 16014 2214 ## COG0515 Serine/threonine protein kinase 17 9 Op 4 5/0.118 - CDS 16011 - 16772 676 ## COG0631 Serine/threonine protein phosphatase 18 9 Op 5 4/0.118 - CDS 16788 - 17855 1191 ## COG0820 Predicted Fe-S-cluster redox enzyme - Prom 17876 - 17935 4.7 - Term 17882 - 17943 1.3 19 10 Op 1 20/0.000 - CDS 18184 - 19653 1060 ## COG0144 tRNA and rRNA cytosine-C5-methylases - Prom 19677 - 19736 2.1 - Term 19741 - 19789 9.2 20 10 Op 2 26/0.000 - CDS 19810 - 20781 865 ## COG0223 Methionyl-tRNA formyltransferase 21 10 Op 3 . - CDS 20784 - 21266 583 ## COG0242 N-formylmethionyl-tRNA deformylase - Prom 21286 - 21345 2.2 22 11 Tu 1 . + CDS 21343 - 21450 87 ## 23 12 Op 1 5/0.118 - CDS 21435 - 24011 1889 ## COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase 24 12 Op 2 10/0.000 - CDS 23996 - 25273 1232 ## COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase - Prom 25294 - 25353 2.5 - Term 25376 - 25409 4.1 25 12 Op 3 25/0.000 - CDS 25438 - 25650 248 ## COG1758 DNA-directed RNA polymerase, subunit K/omega 26 12 Op 4 4/0.118 - CDS 25660 - 26244 544 ## COG0194 Guanylate kinase 27 12 Op 5 4/0.118 - CDS 26282 - 26542 184 ## COG2052 Uncharacterized protein conserved in bacteria 28 12 Op 6 . - CDS 26574 - 27476 854 ## COG1561 Uncharacterized stress-induced protein 29 12 Op 7 . - CDS 27491 - 29383 1929 ## COG0685 5,10-methylenetetrahydrofolate reductase - Prom 29408 - 29467 3.9 - Term 29455 - 29491 6.1 30 13 Tu 1 . - CDS 29493 - 30329 1027 ## COG0253 Diaminopimelate epimerase - Prom 30365 - 30424 5.2 - Term 30380 - 30407 -0.8 31 14 Tu 1 . - CDS 30491 - 33271 2654 ## COG0474 Cation transport ATPase - Prom 33511 - 33570 4.6 + Prom 33365 - 33424 5.0 32 15 Tu 1 . + CDS 33446 - 35203 1760 ## COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP + Term 35298 - 35336 6.0 33 16 Op 1 . - CDS 35307 - 36239 856 ## COG5012 Predicted cobalamin binding protein 34 16 Op 2 4/0.118 - CDS 36313 - 37629 1316 ## COG1004 Predicted UDP-glucose 6-dehydrogenase 35 16 Op 3 . - CDS 37645 - 38526 898 ## COG1210 UDP-glucose pyrophosphorylase 36 16 Op 4 . - CDS 38513 - 39370 960 ## COG0613 Predicted metal-dependent phosphoesterases (PHP family) 37 16 Op 5 . - CDS 39450 - 40361 251 ## PROTEIN SUPPORTED gi|149913192|ref|ZP_01901726.1| 50S ribosomal protein L35 - Prom 40382 - 40441 5.2 - Term 40401 - 40447 13.6 38 17 Op 1 . - CDS 40478 - 40915 451 ## Pjdr2_3774 hypothetical protein - Prom 40961 - 41020 5.6 - Term 41061 - 41099 -0.7 39 17 Op 2 . - CDS 41215 - 41478 358 ## COG4471 Uncharacterized protein conserved in bacteria - Prom 41519 - 41578 2.8 + Prom 41426 - 41485 4.5 40 18 Tu 1 . + CDS 41552 - 42562 940 ## COG4448 L-asparaginase II + Term 42569 - 42613 8.0 - Term 42555 - 42601 7.6 41 19 Tu 1 . - CDS 42722 - 43174 250 ## PROTEIN SUPPORTED gi|163764796|ref|ZP_02171849.1| ribosomal protein S17 - Prom 43317 - 43376 4.3 - Term 43326 - 43379 2.2 42 20 Op 1 1/0.353 - CDS 43393 - 45405 1163 ## COG1061 DNA or RNA helicases of superfamily II 43 20 Op 2 . - CDS 45380 - 47077 1451 ## COG1061 DNA or RNA helicases of superfamily II - Prom 47176 - 47235 3.6 + Prom 47140 - 47199 5.8 44 21 Tu 1 . + CDS 47250 - 48020 642 ## COG1525 Micrococcal nuclease (thermonuclease) homologs + Term 48027 - 48099 23.9 - Term 48032 - 48066 8.3 45 22 Op 1 . - CDS 48089 - 48523 559 ## COG0517 FOG: CBS domain 46 22 Op 2 . - CDS 48574 - 49812 1032 ## COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase - Prom 49850 - 49909 4.6 + Prom 49861 - 49920 5.7 47 23 Op 1 . + CDS 49949 - 50293 175 ## PROTEIN SUPPORTED gi|163764794|ref|ZP_02171847.1| ribosomal protein L36 48 23 Op 2 . + CDS 50306 - 51487 1063 ## COG0772 Bacterial cell division membrane protein + Term 51534 - 51565 4.1 - Term 51522 - 51553 4.1 49 24 Tu 1 . - CDS 51597 - 51983 459 ## COG1302 Uncharacterized protein conserved in bacteria - Prom 52008 - 52067 3.5 + Prom 52074 - 52133 5.5 50 25 Tu 1 . + CDS 52180 - 53223 1048 ## COG0387 Ca2+/H+ antiporter + Term 53253 - 53289 4.0 51 26 Tu 1 . - CDS 53272 - 53556 245 ## COG4838 Uncharacterized protein conserved in bacteria - Prom 53591 - 53650 4.3 - Term 53655 - 53687 4.1 52 27 Tu 1 . - CDS 53702 - 53950 381 ## Pjdr2_3786 phosphotransferase system, phosphocarrier protein HPr - Prom 53986 - 54045 2.9 53 28 Op 1 . - CDS 54054 - 55169 1180 ## COG2309 Leucyl aminopeptidase (aminopeptidase T) 54 28 Op 2 . - CDS 55220 - 55924 564 ## COG0398 Uncharacterized conserved protein - Prom 55944 - 56003 4.8 55 29 Tu 1 . - CDS 56119 - 58134 1620 ## COG2199 FOG: GGDEF domain - Prom 58216 - 58275 3.3 + Prom 58220 - 58279 6.3 56 30 Tu 1 . + CDS 58452 - 59057 858 ## PROTEIN SUPPORTED gi|169189545|ref|ZP_02849544.1| ribosomal protein S4 + Term 59083 - 59120 9.4 - Term 59071 - 59108 9.4 57 31 Tu 1 . - CDS 59155 - 60420 355 ## PROTEIN SUPPORTED gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 - Prom 60514 - 60573 1.8 + Prom 60856 - 60915 6.2 58 32 Tu 1 . + CDS 60942 - 64040 2695 ## COG0744 Membrane carboxypeptidase (penicillin-binding protein) + Term 64085 - 64128 3.8 - Term 64201 - 64246 8.1 59 33 Tu 1 . - CDS 64249 - 65973 1522 ## COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases - Prom 66187 - 66246 4.4 + Prom 66064 - 66123 4.5 60 34 Op 1 . + CDS 66180 - 66818 700 ## GYMC10_1918 GCN5-related N-acetyltransferase 61 34 Op 2 . + CDS 66855 - 68033 955 ## COG0123 Deacetylases, including yeast histone deacetylase and acetoin utilization protein + Term 68144 - 68178 1.5 - Term 68129 - 68168 4.1 62 35 Op 1 . - CDS 68192 - 68890 732 ## COG0775 Nucleoside phosphorylase 63 35 Op 2 . - CDS 68930 - 69934 939 ## COG1609 Transcriptional regulators - Prom 69981 - 70040 4.6 - Term 70042 - 70083 0.2 64 36 Tu 1 . - CDS 70190 - 70636 320 ## Pjdr2_3801 hypothetical protein - Prom 70740 - 70799 6.9 65 37 Op 1 . - CDS 70802 - 71347 577 ## COG0693 Putative intracellular protease/amidase 66 37 Op 2 2/0.235 - CDS 71379 - 73109 1997 ## COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) 67 37 Op 3 . - CDS 73102 - 74994 1740 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific - Prom 75015 - 75074 4.2 - Term 75048 - 75078 3.0 68 38 Tu 1 . - CDS 75130 - 75882 755 ## - Prom 75968 - 76027 3.4 - Term 75999 - 76048 12.5 69 39 Op 1 . - CDS 76077 - 76502 517 ## COG1832 Predicted CoA-binding protein 70 39 Op 2 . - CDS 76555 - 77370 804 ## COG4990 Uncharacterized protein conserved in bacteria 71 39 Op 3 . - CDS 77384 - 78691 1223 ## COG0128 5-enolpyruvylshikimate-3-phosphate synthase 72 39 Op 4 11/0.000 - CDS 78740 - 79099 451 ## COG0239 Integral membrane protein possibly involved in chromosome condensation 73 39 Op 5 . - CDS 79096 - 79473 379 ## COG0239 Integral membrane protein possibly involved in chromosome condensation - Prom 79576 - 79635 4.2 + Prom 79517 - 79576 5.7 74 40 Tu 1 . + CDS 79606 - 79899 301 ## COG0607 Rhodanese-related sulfurtransferase - Term 79732 - 79777 3.0 75 41 Tu 1 . - CDS 79925 - 80431 312 ## COG0703 Shikimate kinase - Prom 80505 - 80564 4.6 76 42 Tu 1 . + CDS 80657 - 81001 111 ## Pjdr2_3809 hypothetical protein + Term 81069 - 81101 1.0 - Term 80983 - 81036 0.7 77 43 Tu 1 . - CDS 81092 - 82504 1635 ## COG0362 6-phosphogluconate dehydrogenase - Term 82933 - 82957 -1.0 78 44 Op 1 . - CDS 83069 - 84052 782 ## GYMC10_2390 hypothetical protein 79 44 Op 2 . - CDS 84039 - 84578 440 ## PPE_02546 hypothetical protein 80 44 Op 3 . - CDS 84607 - 84993 297 ## 81 44 Op 4 . - CDS 85002 - 85481 510 ## PPSC2_c2905 protein 82 44 Op 5 . - CDS 85503 - 87584 1281 ## PPSC2_c2906 protein 83 44 Op 6 . - CDS 87571 - 89478 1103 ## GYMC10_2385 AAA ATPase 84 44 Op 7 . - CDS 89485 - 90315 507 ## BpOF4_21114 hypothetical protein 85 44 Op 8 . - CDS 90312 - 91019 439 ## PPSC2_c2909 protein 86 44 Op 9 . - CDS 91051 - 92136 796 ## GYMC10_2382 SAF domain protein 87 44 Op 10 . - CDS 92153 - 93652 1086 ## COG0515 Serine/threonine protein kinase - Prom 93768 - 93827 3.0 - Term 93793 - 93828 -0.5 88 45 Tu 1 . - CDS 93849 - 94499 597 ## Pjdr2_3811 hypothetical protein - Prom 94553 - 94612 3.0 Predicted protein(s) >gi|333607612|gb|AFDH01000033.1| GENE 1 220 - 930 720 236 aa, chain - ## HITS:1 COG:BS_yoqW KEGG:ns NR:ns ## COG: BS_yoqW COG2135 # Protein_GI_number: 16079108 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 1 221 1 222 224 246 54.0 4e-65 MCGRYTITVTVEELMARFGLFDAPGIPYHRPKYNVAPGQMVLAVVNDGRNNRIGELKWGL IPEWAKEESVGAKMLNARAETAADKPAYRIPLRRKRCLIPADGFYEWKREGGLKQPMRIR LKDGGLFAMAGLYDTWLSPDGRRVSTCTVLTTAPNPLVADIHDRMPVILRREDEAFWLDR QVQDPADLLSLLWAYPAAEMEAYPVSQLVGNVRNDSPQLIEPIVPPDSPVQEGWLL >gi|333607612|gb|AFDH01000033.1| GENE 2 1510 - 3054 1588 514 aa, chain - ## HITS:1 COG:TM1699_2 KEGG:ns NR:ns ## COG: TM1699_2 COG2206 # Protein_GI_number: 15644447 # Func_class: T Signal transduction mechanisms # Function: HD-GYP domain # Organism: Thermotoga maritima # 323 484 1 159 172 171 50.0 4e-42 MRTYTYRRLLLALLRNYLIGSAIAVLGVGSVLIYSALRATSREMSVMLVILGVSLLVMIG AELTVFARQMRPVRAVFLKHSPALDEIKEAYIRLHQLPVLAVKRIFGPHLFGMVLPAVVL AVGAIRMSLLEISYFDLTLAVLGALLVACMHAMIEFFLTAYSIRPALRHSHDLALRLHGA EVSLDGRVLFSIRKKFQWSAFLIGTFPLFLYYLTVQLRLVREDTSLLMDYWNWDAMIILM GILFASLGAWLLSRDIEHPIGQIHKVMGEVRAGNLAIHAPDLYPDEFSRLVAGFNHMVEG LRERDRINHELISGYFAALAAALDARDAYTAGHSERVAGYSVRIGSLAGFSEHDLEELRK TALLHDIGKIGISDTVLLKEGRLTDDEFAQIQMHPALGERILRQIEPQSLMAPFLPGVRS HHERFDGRGYPDGLKGLDIPLFGRVIAIADAYDAMTSDRPYRKGMSAEKALSILKEGRGT QWDPHFATLFIGWLEEEGGLDKSAGAERTREHAG >gi|333607612|gb|AFDH01000033.1| GENE 3 3265 - 3669 245 134 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_2075 NR:ns ## KEGG: Pjdr2_2075 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 3 115 16 129 131 85 42.0 6e-16 MQPPLQTRDDSMLVKRYVLLPVLLDVLEKNISLLESSGKLPEPLIGHLRLIQDRVTADMA FLRKQFRRRGIRIYEERRTTDGLNVAYICRGYHHRFSLLWRLIRAEVVTALEVYLDPAAG PDTENTGQANITGC >gi|333607612|gb|AFDH01000033.1| GENE 4 3769 - 5016 1318 415 aa, chain + ## HITS:1 COG:BS_yqjW KEGG:ns NR:ns ## COG: BS_yqjW COG0389 # Protein_GI_number: 16079428 # Func_class: L Replication, recombination and repair # Function: Nucleotidyltransferase/DNA polymerase involved in DNA repair # Organism: Bacillus subtilis # 9 415 4 412 412 501 58.0 1e-141 MTAFPEQGKRVIMLADCQSFYASVEKAAHPQYRDKPVVVAGDPARRSGIILAACPLAKAH GVTTAERLGEALRKCPESVVIRPRMEEYIKVSMQITAILQTYTDLVEPFSIDEQYLDVTG SLHLFGTPVEIARDIQQKVLQETGIWTRIGISENKVLAKMACDNFAKKNREGIYELPKSE IANLWELPVSKTYLIGSRMTRHLNRMGILTVGDLAGTQLARLRARWGINGEVIWRVANGI DPSPVTPQTHEGQKAVGHQMTLPRDYATAEEIKVVLLELSELVCQRCRAKGCQGQVVSVG CQGADYDHPSGFYRQMKLPDPTQLTDTVYETAQLLFRKHWDGLPVRKVGVTLGDLVPDDQ YQLLMFGDEERKIALERATDTIRQRFGSTAIMRAVSATPAGQAKDRSHKIGGHYK >gi|333607612|gb|AFDH01000033.1| GENE 5 5013 - 5372 363 119 aa, chain + ## HITS:1 COG:no KEGG:PPSC2_c2386 NR:ns ## KEGG: PPSC2_c2386 # Name: not_defined # Def: yold-like protein # Organism: P.polymyxa_SC2 # Pathway: not_defined # 11 100 2 91 111 86 47.0 3e-16 MKSSSAGSKTGKKLQGNGLYESSRMMLPEHKEAYLRHQRELNRRAHPSLEDEERQRIGSL LARAKTTGRVLTLTVYGPFEDEEITGIVRRIDPLKQEIHLEAPGNVRRLAFDDILKISD >gi|333607612|gb|AFDH01000033.1| GENE 6 5525 - 5590 62 21 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MGTKNNGTFRVYSSAGAACFF >gi|333607612|gb|AFDH01000033.1| GENE 7 5587 - 5874 415 95 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_3740 NR:ns ## KEGG: Pjdr2_3740 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 1 95 7 101 101 120 64.0 1e-26 MSYQQYGIDPALVERVKWKMKNPEIKERVKRLLEGVTKYDLQNRQKVAAFVAQFSKVLGE PLTQAQSSSLIDFVIAQKIDPNNTFHLLKLWGMFR >gi|333607612|gb|AFDH01000033.1| GENE 8 6205 - 8250 1999 681 aa, chain - ## HITS:1 COG:BH2495 KEGG:ns NR:ns ## COG: BH2495 COG1200 # Protein_GI_number: 15615058 # Func_class: L Replication, recombination and repair; K Transcription # Function: RecG-like helicase # Organism: Bacillus halodurans # 10 681 2 673 673 766 56.0 0 MELNEIPVTEVRGIGGQKAEELQALGITRVAHLLEYYPFRYEDYSIRDLTQVKDGEKITV QGKIMSEPVLQRYGRKNRLSCKVVIDHFFVTAVWFNRPFLKDQLAPGREIVLTGKWDQRR HQMTVSDSEFPDRGTSKTGTLQPVYSVGGSLTQHFMRKATAQALTQYSAMVSEIVPAELL RKYRLLPRRRAMEIIHRPQGTEDGNEARRRMVYEELFLFQLKMHAFRAITRNRADGLAQQ VDLPKVRAFVRGLPFTLTPSQKKVIAEILQDMQEPYTMNRLLQGDVGAGKTVVAAAALYA TVTAGCQGALMVPTEILAEQHNRSLTAMFEPYGLQVALLTGSTTARQRRELLASLQMGML DILVGTHALIQEDVFFRKLGLVVTDEQHRFGVNQRSILRRKGMNPDVLTMTATPIPRTLA ITAFGDLDVSTLRELPKGRKPIKTYWVRHEMFDRVLGFIRREADAGRQAYVICPLIEESE KLDVQNAIDVHVQLQQAFPDLKVGLLHGRMAAAEKDEIMHRFKDGEIHTLVSTTVIEVGV DVPNATLMVVYDADRFGLSQLHQLRGRVGRGEHQSFCVLIADPKTEVGKERMQAMTDTTD GFEIARRDLELRGPGDFFGTKQSGLPDFRIADMMVDFETMELARDDAAELVARPEFWTAA EYIPLRDFLQRELIFDGDIMD >gi|333607612|gb|AFDH01000033.1| GENE 9 8252 - 9106 1113 284 aa, chain - ## HITS:1 COG:lin2658 KEGG:ns NR:ns ## COG: lin2658 COG1307 # Protein_GI_number: 16801719 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 3 278 4 277 283 186 39.0 4e-47 MSRVRIVTDSTSDIPKATREKLGIEMVPLKIHLDGETYLDAVTLDAEQFYHKLVAAHSMP TTSQPSPAEFLALYEKLLAEDPEVTILSIHLSSAMSGTYQSALLAKSMLDEEDRVQVIDS KTACYGIGALVVAAAEAAREGKSLEECVEIVRKIRESFVIYFLVDTLEYLQKGGRIGKAS ALIGSLLNIKPILSVDPEGEIASVDKVRGQKKAMARIIEMMRRDIPGGDIHISVAHANNT EAAEELYRLIEQNFTIKSMQYITIGPVIGTHAGPGTVAAFVSPA >gi|333607612|gb|AFDH01000033.1| GENE 10 9122 - 10792 1897 556 aa, chain - ## HITS:1 COG:BH2498 KEGG:ns NR:ns ## COG: BH2498 COG1461 # Protein_GI_number: 15615061 # Func_class: R General function prediction only # Function: Predicted kinase related to dihydroxyacetone kinase # Organism: Bacillus halodurans # 1 556 32 557 557 517 50.0 1e-146 MNVFPVPDGDTGTNMNLTLTSGVEELKRKPSAHIGKAAEALSKGLLMGARGNSGVILSQL FRGFAKYTHDMEAVDVQQFAAALQQGVDTAYKAVVKPVEGTVLTVSKEAAKHAVASARRC ADVTELVEEVLKQASETLSKTPDMLPVLKQVGVVDAGGQGLVCIYEGFVSALNGEQQEDT SSFIVADAPVLGQTAKDKDIATLQLAPEAHHMDRTGPAQLHMSTDDIEFGYCTEFLLKVV PGKTKGLEFNEINFRSQLGKHGDSLLVVADDELVKVHIHAEYPGQVMNLAMEYGDLTRIK IENMRDQHSHILEEAAEVYERAAEEEAQRSVVPAAKELKPYGFVAVALGQGITEIFTSVG VDVVLSGGQTMNPSTEDVVKAIEQIDAETVFILPNNSNIIMAAKQAQDLVEDKRIIVIPT KSIPQGLASILAFQEKAGADVNEQTMNEAIRGVRSGQVTFAVRDTSIDGIEIKEGHFIGI EDGKIVVSEPELVEASRKLLDHMIREAEIVTILTGEDAGDEQTEQLTAYIEAQYPNVEIE LHPGGQPLYAYIFSVE >gi|333607612|gb|AFDH01000033.1| GENE 11 10910 - 11269 386 119 aa, chain - ## HITS:1 COG:BS_yloU KEGG:ns NR:ns ## COG: BS_yloU COG1302 # Protein_GI_number: 16078646 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 118 1 118 120 141 61.0 2e-34 MPIEVSNELGKIHVTDEVIAVLAGSAALDCYGLVGMASRKQLKDGIAELLGRDNLGRGVE VRREQDRVEIDLYIIVSYGTKISVVAHNVQTKVKYVLNEVVGLHVDEVHIFVQGVRVSR >gi|333607612|gb|AFDH01000033.1| GENE 12 11553 - 11741 297 62 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169189500|ref|ZP_02849499.1| ribosomal protein L28 [Paenibacillus sp. JDR-2] # 1 62 1 62 62 119 90 8e-26 MSRKCYITGKSPKSGNHVSHANNKNKRTWGVNVQKVRILVDGKPKRVYVSTRALKSGKVE RV >gi|333607612|gb|AFDH01000033.1| GENE 13 11823 - 11903 160 26 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKFYTVKLPKFLGGFVKAVLNTFSKN >gi|333607612|gb|AFDH01000033.1| GENE 14 12162 - 12824 710 220 aa, chain - ## HITS:1 COG:BH2502 KEGG:ns NR:ns ## COG: BH2502 COG0036 # Protein_GI_number: 15615065 # Func_class: G Carbohydrate transport and metabolism # Function: Pentose-5-phosphate-3-epimerase # Organism: Bacillus halodurans # 1 217 1 215 216 288 70.0 4e-78 MLRIAPSILSADFAKLGEEIREVEKAGADWIHVDVMDGHFVPNITLGPPIVSAIRPHTSL TLDVHLMIEQPERYIADFAKAGADLISVHVETCPHLHRTLHQIKEHGVKAGVVLNPATPL SAIEHVLEDYLDLVLIMTVNPGFGGQSFIPGMLSKIRDLRGKLRERGLDHVEIEVDGGIN EKTAPLVAEAGATMAVAGNAVFGRPDRAEAIRLIRESAGN >gi|333607612|gb|AFDH01000033.1| GENE 15 12826 - 13827 829 333 aa, chain - ## HITS:1 COG:BS_yloQ KEGG:ns NR:ns ## COG: BS_yloQ COG1162 # Protein_GI_number: 16078641 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Bacillus subtilis # 1 333 1 298 298 315 48.0 1e-85 MPQGLIVKALSGYYYVLPEGSRLGSDSLVQCRARGVFKKRGISPLVGDRIKYEATENGEG TVTEIDPRTSEMIRPPIANVDTAMLVFSVVEPDLNLQLLDKFLVHIENTGLHAAICLTKA DLVDLADDSSEKSAAESAEEGEAVQLTASSASAGLVAPPMPGWLTDAVELYRKIGYPVML TSSRQGEGVDQVAEYLDGKISVFAGQSGVGKSSMLNAIVAGLDLQTNEISHRLGRGKHTT RHVELIPLAKGGYVADTPGFSQLDFVELEAEDLGSCFREFQSYAETCKFRGCLHLHEPGC KVRDAVEQGEIAASRYEHYLQFLQEMKEKKRRY >gi|333607612|gb|AFDH01000033.1| GENE 16 13867 - 16014 2214 715 aa, chain - ## HITS:1 COG:BH2504_1 KEGG:ns NR:ns ## COG: BH2504_1 COG0515 # Protein_GI_number: 15615067 # Func_class: R General function prediction only; T Signal transduction mechanisms; K Transcription; L Replication, recombination and repair # Function: Serine/threonine protein kinase # Organism: Bacillus halodurans # 1 327 1 323 343 352 56.0 2e-96 MIGTKLGGRYEILERIGGGGMALVYKGLDILLHRKVAVKMLRQQYVNDEEFIRRFRREAQ AAASLSHPNVVSIYDVGQEGDLHYIVMEYIEGKTLNEIIKERAPLPVEEAVHYAAQICDA LEHAHHNGIIHRDIKPHNILIGKNGRVKVTDFGIARAATSSTITQTGSVVGSVHYFSPEH AKGTNTGEKSDLYSLGIVMYQMLTGELPFHGESPISVALKHLQEDAEDPRRINPMIPQSL ENIILKAVRKKPDERYQSARAMMEDLETCLQPERRNEPKISFHHDDHDDDENTLVLPAIR PNQQVQIFDDEDDAEESEVKGKTEPAASKSSPPPKKKKKTGLWVTILVLIALLLAGAIYY VQGKVVVAEVPVPNVKTDTLQKAQEKLTAAKLGYEVEEVADPQPAGVVIDQNPQAGMKAK EQTKVKLKVSKGPELKKMISVVNHNVDDAKAQLIQGLGLKEDQISITYRYSEDQEANTVL EQTPREGEELNPAAAAVKLIASKGKETIKMPALVGLSKEEAISRISVSKLKVGAVTEEPS YKVAKGKVIKQFPYEPDNDVPVGQAIGLIVSSGMPQEAGQMVVNVPLVPSSEGKKSTFKV LVSDAQGDNREYRTETISSPSAVDVKVIVAPDKNAVITVKEDDKVVNVTTRTYQDFLNQQ AGSPSPTPTPQQTGGQTSMQQNGGSKLVSGGGEEKGKGKEKDKDKDKDKNKDKDD >gi|333607612|gb|AFDH01000033.1| GENE 17 16011 - 16772 676 253 aa, chain - ## HITS:1 COG:BH2505 KEGG:ns NR:ns ## COG: BH2505 COG0631 # Protein_GI_number: 15615068 # Func_class: T Signal transduction mechanisms # Function: Serine/threonine protein phosphatase # Organism: Bacillus halodurans # 1 239 1 238 249 191 43.0 1e-48 MKMVSVTDTGRVRSVNEDRAVIQHDVGGYSLAIVADGMGGHQAGDVASQMTIDIIREELK SLSSSMTVEECKLAVKEAIRSTNRKVFEYASAREELQGMGTTVVVLLASGQLAVLGHIGD SRAYKISGPSILRLTEDHSLVNELLKNGQLTPDEAERHPRRNVLTRALGTEPDAQPDVQH LSLESGDILLLCSDGLSGMVDDQTILSIVRGESELEAMAQSLLQAALDAGGDDNITIILA SGDSGPASGGDPA >gi|333607612|gb|AFDH01000033.1| GENE 18 16788 - 17855 1191 355 aa, chain - ## HITS:1 COG:BH2506 KEGG:ns NR:ns ## COG: BH2506 COG0820 # Protein_GI_number: 15615069 # Func_class: R General function prediction only # Function: Predicted Fe-S-cluster redox enzyme # Organism: Bacillus halodurans # 9 350 15 355 362 484 66.0 1e-136 MKNKTLQVDKPFVYDYSLEDWKQWTEENKEPAFRAGQIFDWLYVKRVTDFEEMTNLSKAL RDKLKAGFSFVTLTEIAKQQSKDGTVKFLFELADKNAIETVIMKHSYGNSVCVTTQVGCR IGCTFCASTLGGLKRDLRAGEIVAQIVKAQQLLDATGERVSSIVIMGIGEPFENYDAMMK FLNIMIHPKGLNIGQRHITVSTSGIVPNIYRFADEDTQINLAISIHAPNDALRSKLMPVN RRFPFADLIESCKYYMAKTGRRITFEYALMGNVNDQAEHAEELAEVLKELPMCHVNLIPV NYVQERDYVRTTRDDIFNFQRILERNKINATIRREQGSDIAAACGQLRAKHMEAK >gi|333607612|gb|AFDH01000033.1| GENE 19 18184 - 19653 1060 489 aa, chain - ## HITS:1 COG:BH2507 KEGG:ns NR:ns ## COG: BH2507 COG0144 # Protein_GI_number: 15615070 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA and rRNA cytosine-C5-methylases # Organism: Bacillus halodurans # 42 487 4 448 450 431 49.0 1e-120 MKKNEPDNRKGQAGGASGPASRSRTDRRNSQAAKPKRENVKKTARDAALSVLTGVEEAGS YSNLKLNQILREADLPRPDAALATEIVYGTIQRRNTIDYYLAKLVTKGLGKLQPWVRSLL RMSLYQLLYLERVPDHAVVSEAVNIAKRRGHQGISGMVNGVLRSAIRQRAELTLPQGMTD TQRISLEHSHPEWLVRRWTLQYGAEACERICKANNEPPHISIRANTRRQHPDALLEQLRL GGFDAEPSALSPAGIVVSSGGNMALTPGFGQGDYSIQDESSMLVAEALRPEAGMTVLDCC AAPGGKTAHIAEKMDDTGTVWACDLHPHKKRLIDEQAQRLGLKSVHTLVKDARELAGEFE PASFDRILLDAPCSGFGVIRRKPDLKWGKREEDIAGIAAVQQSILEAVHGLLKPGGVLVY STCTIERTENEDAVARFLEAHPDFVLDPIPTTGWPESAPLEQAASGMISIMPDQYGTDGF FIARIRRLA >gi|333607612|gb|AFDH01000033.1| GENE 20 19810 - 20781 865 323 aa, chain - ## HITS:1 COG:BS_fmt KEGG:ns NR:ns ## COG: BS_fmt COG0223 # Protein_GI_number: 16078636 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA formyltransferase # Organism: Bacillus subtilis # 2 322 3 311 317 356 56.0 4e-98 MKLIFMGTPDFAVPSLRTLIEGGYEVTAVVTPPDRPKGRKRVLTPPPVKVEAEKHGIPVF QPEKLRTSDTVDEIRRIAPDLIVTAAYGQILPKAVLDIPRLGCINIHASLLPKYRGGAPI HHAIIQGEQVTGVTIMYMAVGLDTGDMISKIEVPIGDDDTTGTMFDKLSLAGADLLKRTL PELIAGTVQAVPQDDSQAVYSPNINREDEKIDWNRSSKDIWNLVRGLNPFPGAYTTWNGE ILKVWVCKKPEDLAPSADRTSESSTGAGLKPGTVIGADEDGIEVATGDGSLKLLNVQPAG KKAMEAAQLVRGSSMEKGTVLGE >gi|333607612|gb|AFDH01000033.1| GENE 21 20784 - 21266 583 160 aa, chain - ## HITS:1 COG:CAC1722 KEGG:ns NR:ns ## COG: CAC1722 COG0242 # Protein_GI_number: 15894999 # Func_class: J Translation, ribosomal structure and biogenesis # Function: N-formylmethionyl-tRNA deformylase # Organism: Clostridium acetobutylicum # 1 144 1 142 150 147 55.0 8e-36 MAIRMIVKEGDSVLRETAKQVTKFNSNLHKLLDDMADTMYDAPGVGLAAPQVGILKRVIV MDVGDENGLIEIVNPVVVEQSGEQIGPEGCLSIPGLEGEVKRPFKVKVKGQDRNGEEFEL EGEELLARCIMHEVDHLNGVLFTDLAIRLYRPELEEKEDH >gi|333607612|gb|AFDH01000033.1| GENE 22 21343 - 21450 87 35 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSFPPLIYALIGTGIHPVLSYTGLSVPEHADYMSI >gi|333607612|gb|AFDH01000033.1| GENE 23 21435 - 24011 1889 858 aa, chain - ## HITS:1 COG:BS_priA KEGG:ns NR:ns ## COG: BS_priA COG1198 # Protein_GI_number: 16078634 # Func_class: L Replication, recombination and repair # Function: Primosomal protein N' (replication factor Y) - superfamily II helicase # Organism: Bacillus subtilis # 2 858 3 805 805 823 49.0 0 MFAKVIVDVPAKQTNRAFDYSVPPSLQGWVEVGSRVGVPFGPRVLQGFVVELHETTTVDP KRLKAIRHVLDAAPPLTEELVQLGHWMSSTYLCHEVTALQAMLPGALKAKYERFVQAAEA GSAGGTELLLLLPAQENILNYLRSKGKAKMEDLLDAFPEDGGLIRQMLDEGQLVETQGMK DRLATKKALTVFSSGAPEVSEAAMETQAAGTSGNAPGSGGSADLLAIAEELPARSHKQKE VLRYLHENPRPIRLTELMDKLQVGAGTVKGLADKGWIGLREVEVMRDPYANRHFEETKPL PLTREQQSVYDDIAATLDSRSHQVYLLQGVTGSGKTEVYLQAISRCLEQGREAIVLVPEI SLTPQMVERFKGRFGDEVAVMHSRLSLGERFDEWRKIMRRQVRVVIGARSAVFVPFRKLG LIIIDEEHESSYKQEESPKYHARDIAAWRARYNGAAVILGSATPSLESIQKTKVAPGGKP EYKLLKMKSRVAGRPLPPVHIVDMREELRSGNRSMFSRLLHRGLEERLLKGEQTVLLLNR RGYATFVMCRTCGYVAGCPHCDISLTYHQVSRTLRCHYCGYAERQMELCPDCGSEHIRHF GTGTQRVEEELVKLFPGIRVIRMDVDTTTEKGSHEKWLTMFRNKQADVLLGTQMVAKGLD FPDVTLVGVIAADTVLNLPDFRSAERTFQLLTQVAGRAGRHQLPGEVFVQTYTPEHYSVI TASHHDYEGFVEEELPHRRKLGYPPYCRLILITLTHEQVPLLVRTAEAVAQRLRELGAAE QENVFASSTGEDFFMNVLGPVASPIPRIKDRYRFQCVVKYRGEASASRIVAKVLDEFAER TTKDKLTISVDVDPQMLM >gi|333607612|gb|AFDH01000033.1| GENE 24 23996 - 25273 1232 425 aa, chain - ## HITS:1 COG:lin1939 KEGG:ns NR:ns ## COG: lin1939 COG0452 # Protein_GI_number: 16801005 # Func_class: H Coenzyme transport and metabolism # Function: Phosphopantothenoylcysteine synthetase/decarboxylase # Organism: Listeria innocua # 2 394 1 395 399 419 56.0 1e-117 MLSGKTIVVGVCGGIAAYKAAALCSKLSQAGADVRVIMTKSAVEFITPLTFQSLTRKPVA VDTFDEKEAAVISHIDLADRADLVVVAPATANMIGKMAHGLADDMLSTTLLATTAPVMVA PAMNVHMYTHPAVAGNMKVLQERGVLFVEPGTGQLACGYVGKGRLAEPEEIFGRIAAYFQ PDTPLQGRNVLVTAGGTVERIDPVRYITNDSSGKMGYAIAEAAKRLGANVTLVSGPSSLP VPPGVERVSVTSALDMYDKVMARFEKTDLVFKAAAVADYRPSEQREQKMKKTGETLTIEL VKNPDILQALGEAKTRQFVVGFAAETERVDEYALDKLLRKKCDLLVANDVSMQGAGFGTD TNVVRIFDAGGLVEAPPMMTKDAIAEHIVRLAASRQQMRQQGAEPPEPDAEEPGADKGET PCSPK >gi|333607612|gb|AFDH01000033.1| GENE 25 25438 - 25650 248 70 aa, chain - ## HITS:1 COG:BH2511 KEGG:ns NR:ns ## COG: BH2511 COG1758 # Protein_GI_number: 15615074 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, subunit K/omega # Organism: Bacillus halodurans # 1 65 1 67 68 57 55.0 8e-09 MLYPSIDKLLDKVDSKYSLVVAAAKRARSLRDGTNTHLQDIKSHKQVGVALEELYGDLVK YEKIETKEDE >gi|333607612|gb|AFDH01000033.1| GENE 26 25660 - 26244 544 194 aa, chain - ## HITS:1 COG:BH2512 KEGG:ns NR:ns ## COG: BH2512 COG0194 # Protein_GI_number: 15615075 # Func_class: F Nucleotide transport and metabolism # Function: Guanylate kinase # Organism: Bacillus halodurans # 1 192 10 201 204 246 64.0 1e-65 MLSGPSGVGKGTVCSALRKMSPELVYSVSATTRKPREGEVEGVNYFFKSKDQFEQLIASD EMLEHAEYVGNYYGTPRRFVEETLASGKDVILEIEVQGALKVKEKFPEATFIFLIPPSLA ELENRIVTRGTETNDIIRSRMSVAVDEIRLMRHYDYGIVNDEVHKACYKIQSILMAEHCK CDRILPRLEQWIGE >gi|333607612|gb|AFDH01000033.1| GENE 27 26282 - 26542 184 86 aa, chain - ## HITS:1 COG:CAC1717 KEGG:ns NR:ns ## COG: CAC1717 COG2052 # Protein_GI_number: 15894994 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 1 82 1 82 92 131 92.0 4e-31 MAIKLINIGFGNIVSANRIISIVSPESAPIKRIIQEARDRHMLIDATYGRRTRAVIITDS DHVILSAVQPETVAHRLSNKDDDHDE >gi|333607612|gb|AFDH01000033.1| GENE 28 26574 - 27476 854 300 aa, chain - ## HITS:1 COG:CAC1716 KEGG:ns NR:ns ## COG: CAC1716 COG1561 # Protein_GI_number: 15894993 # Func_class: S Function unknown # Function: Uncharacterized stress-induced protein # Organism: Clostridium acetobutylicum # 7 300 1 292 292 233 43.0 4e-61 MDVSPYMIRSMTGFGHASLSSQGYRVSIDIKTVNHRYCDISVRMPKEWMAYEDTIKKTVL RFIKRGRADCFVTIERDSASNKSVTVDWALVDGYMQAAEQLRQKHGLAGELHLSDLLKLP DLLAISEQREGDDDALADLLVACTEGALAELNGMREREGSHLSEDLTVRLTMIEDLNVEM KRYAPEVVREYAVKLRQRIQELLTDQVPVDEQRLAAEIALFADRSNVDEEMTRLHSHISQ FRQLLGSREPVGRKLDFLIQEMNREANTIGSKAGHIEVSGRVIELKAELEKMREQIQNIE >gi|333607612|gb|AFDH01000033.1| GENE 29 27491 - 29383 1929 630 aa, chain - ## HITS:1 COG:BH1629_2 KEGG:ns NR:ns ## COG: BH1629_2 COG0685 # Protein_GI_number: 15614192 # Func_class: E Amino acid transport and metabolism # Function: 5,10-methylenetetrahydrofolate reductase # Organism: Bacillus halodurans # 301 614 6 319 335 390 60.0 1e-108 MKPELRQVLAQKILIGDGAMGTYLYQQGFPVGISYEELNLIQSEVVADVHRRYYEAGARL IETNTFSANREKLSKYGLEQEVEAINRAGVELARSSVGEDAYVVGAIGPIRAGMRKNVRT ADVEDALREQILVLLDTQVDGLLLETFYDLEEMLIALRLIRQLSSIPVICQFATEGINTT HDGISLQDAFLRLKEEGADVIGFNCRTGPNGILRSLQGVAQLSDIPFSVFPNAGIPDYVD GRYSYAATPEYFAESALRFADLGARIIGGCCGTTPEHIAAMVKALQGYEPNRSEVYAAES VSAAERAVVTEAAPQTSVREADVEPTLVDLVKQRHTVIVELDPPRDLDIGKFMEGTKALQ DVHVDAITMADNSLAVTRMSNLALGMLVKEQHGARPLIHIACRDRNSIGTQSHLMGLHAL GIDHVLAVTGDPARFGDLPGASSVYDMTSFEMIRMIKQLNEGIAFSGKPLKKKANFIVGA AFNPNVKYLDKAVQRLERKIESGADYIMTQPVYDPKLIERMHEATKHLDVPVFIGIMPLA SGRNAEYLHNEVPGIQLSDEVRARMTGLEGEAGRKEGVAIAKELLDAAMPLFNGIYFMTP FLFYDMSVQLTQYVWQKAERRELLLSPLLK >gi|333607612|gb|AFDH01000033.1| GENE 30 29493 - 30329 1027 278 aa, chain - ## HITS:1 COG:slr1665 KEGG:ns NR:ns ## COG: slr1665 COG0253 # Protein_GI_number: 16332245 # Func_class: E Amino acid transport and metabolism # Function: Diaminopimelate epimerase # Organism: Synechocystis # 1 277 3 278 279 268 49.0 6e-72 MEFTKMNGLGNDFIVLSGYKELPENVAELAVRWCNRYFGIGADGLVFILPSEKADVQMRI INSDGSEPEQCGNAIRCVAKYVYDRDPGKREAITVETRGAGVQQVHVTAEKGIAKAIRVD MGEPVLQGLEIPTTIDAERVIDQPIEAGGRTFTFTAVSMGNPHCVIDVEDAPSFDLAAWG PLLEQHPLFPNKANVEFVTVRSRDYADMRVWERGAGPTLACGTGACATLVALVLTGKTDR TATISLKGGDLLIEWNEADNRVYMTGPAAEVYKGKVEE >gi|333607612|gb|AFDH01000033.1| GENE 31 30491 - 33271 2654 926 aa, chain - ## HITS:1 COG:BH2515 KEGG:ns NR:ns ## COG: BH2515 COG0474 # Protein_GI_number: 15615078 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Bacillus halodurans # 5 903 2 894 902 1035 61.0 0 MSQKEWYQMTADEVLQTQRVHPSEGLSSAEADNRQTEAGRNELSEGKSVSPVTLFLNQFK DFMVLVLMGATLVSGLLGEFLDAITIVAIIIMNGILGFIQEFRAERSLRALKELSAPGAK VMRGGELHTIPARDLVPGDIILLESGDRVPADIRLIEANSFYVEESALTGESVPVGKTVD PLSSDTVTIGDQRNLSFMGTMVTRGTGKGAVVRIGMETEMGKIADLIQNTETLETPLQHR LEQLGKILIVVALCLTVMVVVAGIVHGQPPYAMFLAGVSLAVAAIPEGLPAIVTIALALG VQRMIKRKAIVRKLPSVETLGCASVICSDKTGTLTQNKMTVTHLWVGGSLLEVSGDGYTP EGEISDGGTRVNPAKNSMLRQFLHVSALCSNAVLYKEETEPVKKKRVKDELPDTVWNVKG DPTEGALVVLAAKAGVTHEVLNPQFSRLAEFPFDSERKRMSVIVSGGGRKLVMTKGAPDV LMQHCSYILWDDKVIPFTSTLKAKLMAANEGMARSALRVLGTAYRELKPTESCEDHEDAE RGLVFVGLAGMIDPPRREVREAMAKCRKAGIKTVMITGDHLTTAEAIAKQLGMLPAGGMC ISGHQLAAMDDEALESKVDDIYVYARVSPEHKLRIVKALQAKGHVVAMTGDGVNDAPAIK AADIGIAMGISGTDVTKEASSLVLSDDNFSTIVAAIEEGRGIYENIRKFIRYLLASNVGE ILTMFLAMMAGLPLPLIPIQILWVNLVTDGLPAMALGVDQAEKDLMQHKPRSAKENIFAR RLGWKIISRGFLIGICTLGAFWLVLRENPGDAQHLVKAQSVAFATLVMAQLIHVFDCRSS RSIFHRNPLQNKYLVLAVLSSLVLMLGVMYTPQLQPIFKTVPLGFKDWIIVLIAAGIPTF LMGLGSVMQNPSKKKTSKYSSKPSFR >gi|333607612|gb|AFDH01000033.1| GENE 32 33446 - 35203 1760 585 aa, chain + ## HITS:1 COG:BS_yloA KEGG:ns NR:ns ## COG: BS_yloA COG1293 # Protein_GI_number: 16078628 # Func_class: K Transcription # Function: Predicted RNA-binding protein homologous to eukaryotic snRNP # Organism: Bacillus subtilis # 1 577 3 568 572 555 51.0 1e-157 MALDGLVLHAIVHELQECVGGRINKIHQPTGSDVVMQIRARGRSLKLLLSANPTYPRMHV TEGQYLNPQEAPMFCMLLRKHCEGGIIDSIEQVGLERIVHFRVRQRDELGDVSTKTIVVE IMGRHSNLILMDPSTGTILDGIHHVTPAISSYRIVMPGSAYVEPPAQDKTNPLDTSEAVF RRSMSAGIGEDAAPEKQMLASFSGLSPLAAREIVYRSGTRLGVPYGEDALAPLWQSFRSV TDAVRERRYSPVIVEETKTGKLFFSVMELTQIEGESRVFPTVSECLESYFGDKAERDTVK QRAADLVKLLQNEKAKNIKKMDKLQETKEEAKDADRFRIMGELLTAHLHQIRKGDKTAVV VNYYEEAQPQQSIALDPLLNPSENAQRYFKRYTKSKNSLAYVEEQMSQTEMEIQYLSSLL QQLGSASMRDIAEIRDELAEQGYVRERHTKGKRKKKSDKPSVACFTSSEGVPIYVGKNNT QNDYVTNRLASAGDTWLHTKDIPGSHVVIRSQSFGEATLHEAAQLAAYFSQAKESSSVPV DYTLIRHVHKPSGAKPGFVIYEQQKTLFVTPDDQLIKQMPQTVKA >gi|333607612|gb|AFDH01000033.1| GENE 33 35307 - 36239 856 310 aa, chain - ## HITS:1 COG:MTH124 KEGG:ns NR:ns ## COG: MTH124 COG5012 # Protein_GI_number: 15678152 # Func_class: R General function prediction only # Function: Predicted cobalamin binding protein # Organism: Methanothermobacter thermautotrophicus # 82 281 89 285 314 60 25.0 3e-09 MSRLYTIKEASMRSGLSTQLIRKWEERYGAVQPDRFPNGYRGYTNHDIETLIWLKSKADS GVPIGLAVQEQQLQLESSASTETFSPAEAELPFIRSELKEYQEKLLGFFLHLDPAGAQRF FDQLAALHQMDFILLQVLQPTLIRVGEMWERGEISEYQEHFGSHFIRERLLALKNLFSVP PGGPRLITACSPYERHELGILFLGYFALQNGFQTLYLGASPSEKGIFDCLEQSRPAAFAF GSSMKSMLDEAYPFYAKLDRRIGELGSRTKVFIGGNAIECDEVLRGTKHIYLLSGDAREC ALKLKKLTAY >gi|333607612|gb|AFDH01000033.1| GENE 34 36313 - 37629 1316 438 aa, chain - ## HITS:1 COG:BS_tuaD KEGG:ns NR:ns ## COG: BS_tuaD COG1004 # Protein_GI_number: 16080611 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted UDP-glucose 6-dehydrogenase # Organism: Bacillus subtilis # 1 436 1 436 461 468 53.0 1e-132 MERIAVIGTGYVGLVTGCCYAEIGHEVICVDIDPDKVRRLSLGEIPIYEPGLRELAASNQ AAGRLSFTTDLARAVQDSSILFIAVGTPTLENGEVDMEQVRGAVETLAQQMDDYKIIVMK STVPVGTSRRIRQWMEEGQQRPVPFSVVSNPEFLREGTAIHDTFHPDRVVIGSDDADAAL RVEKLQAAFGGEVVRTDPESAELIKYASNAFLAAKISFINEMANVCEKVGADVSLVARGM GLDNRIGPKFLQAGIGYGGSCFPKDTRAQLKIAQNADYDFRILRAVIEVNTLQRERFVEK VTAALGGNATGRSITVWGLAFKPNTDDLRDAPALDIIRSLQERGAVVTAYDPAAASKASV LLPGVRCLTDPYEAAENAEAVVIATDWEDLRRIDFDRLRSLVREPLIIDGRNMFAPAEMA EKGFTYVSVGRPAFPGAV >gi|333607612|gb|AFDH01000033.1| GENE 35 37645 - 38526 898 293 aa, chain - ## HITS:1 COG:BH3652 KEGG:ns NR:ns ## COG: BH3652 COG1210 # Protein_GI_number: 15616214 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose pyrophosphorylase # Organism: Bacillus halodurans # 1 285 1 287 297 372 64.0 1e-103 MKIRKAIIPAAGLGTRFLPATKAQPKEMLPLVDKPAIQYIVEEAIESGIEDILIVTGRNK RAIEDHFDKSVELEMMLEEKGNDELLSLVRTVTNLADVHYIRQKQPLGLGHAVYCARKFI GNEPFAVLLGDDILRSSKPALRQMMDVFEETQTSVIGVREVPWEDVSKYGIVAPSDEITA YKKIADLVEKPDRGDAPSNLAVIGRYLIMPEIFDILEKCEPGRGGEIQLTDALRILNEKQ PMVAYPIEGRRYDVGDKFGYIQATIEMALEREGLQEELRSYLTNLVRHEFHIG >gi|333607612|gb|AFDH01000033.1| GENE 36 38513 - 39370 960 285 aa, chain - ## HITS:1 COG:BH2283 KEGG:ns NR:ns ## COG: BH2283 COG0613 # Protein_GI_number: 15614846 # Func_class: R General function prediction only # Function: Predicted metal-dependent phosphoesterases (PHP family) # Organism: Bacillus halodurans # 1 282 3 289 290 199 40.0 5e-51 MTQWADLHTHTTASDGTQAPEDNVRLAKEAGLAAVAITDHDTVSGVRAAQLEGRRIGIEV VPGVEISTVAGGQDIHVLGYYIDTESESFLERLEELRNTRNKRNEMMLARLNELGLAVSM EEVVKHLEAGKSEEDTIGRPHIANVLLAKGYVSSMNEAFEKYLGKGGAAYVNPPRIRPVT AIDWIREAGGAAVLAHPGLYGDEDIVRELIAYGLDGIEVSHADHTPEQEAHYGRLAREHG LIATAGSDFHGVRAGQVFHAPLGSKRTPLETVRKLQERRNNRENS >gi|333607612|gb|AFDH01000033.1| GENE 37 39450 - 40361 251 303 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149913192|ref|ZP_01901726.1| 50S ribosomal protein L35 [Roseobacter sp. AzwK-3b] # 3 246 1 240 305 101 26 2e-20 MALNFHQLHIFYTVAEKGSFSHAAQALHMTQPAVTMQVQSLEDHFGIKLFHRSTKKIELT EAGRTLIPYARKCVELIRETENAMTGFTAMAEGRLQLGASLTMGEYILPRLLGPFRKEYP NISVAMKVMNTTQILDEIFAHQLTFGLVEAPIQHPDVHTEAILSDELKLIVPAGHPLAEM DTIRMEDVFQYPFVLREEGSGTRRVMEEELERRGIACSGMDIVMELGSTGAIKSAVEAGL GVSILSQSSVKHEVRLGILKIKEIEGVSFSRSFYAIYLNSTLLPLSAVSFLNFMRRDDLV KWL >gi|333607612|gb|AFDH01000033.1| GENE 38 40478 - 40915 451 145 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_3774 NR:ns ## KEGG: Pjdr2_3774 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 1 145 1 145 145 219 77.0 4e-56 MRDKTMDRWSTYEPFYVNLNDKKIADIVITNHARLRWVDRVENEKTGFEDICDFLWDKLK DGRIASYYKNEQDVYLVDDDLVMVAEFSVIENETDIAGNPLHKMIIVTFLGRMSETIELR DLKSYYSWLRHSRRMTLIKNSRKRR >gi|333607612|gb|AFDH01000033.1| GENE 39 41215 - 41478 358 87 aa, chain - ## HITS:1 COG:BH2594 KEGG:ns NR:ns ## COG: BH2594 COG4471 # Protein_GI_number: 15615157 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 1 85 2 86 92 68 42.0 2e-12 MITERTGLIIWVTDLKAAKNLERFGSVHYMSKKMHYVVLYIHASRYDETVRQLQKLAYVR KVERSYRGEIKTEYESHGPDKSKFYTL >gi|333607612|gb|AFDH01000033.1| GENE 40 41552 - 42562 940 336 aa, chain + ## HITS:1 COG:BMEI1378 KEGG:ns NR:ns ## COG: BMEI1378 COG4448 # Protein_GI_number: 17987661 # Func_class: E Amino acid transport and metabolism # Function: L-asparaginase II # Organism: Brucella melitensis # 4 329 3 328 340 253 43.0 5e-67 MSASSAVIARVIRGPITESIHRGHIAVVDHTGRLLHSLGDPHAVTFARSTAKLIQALPVL ESGAASDFGFTDAEIALICASHNGEDRHVRAARSILAKAGAEADDLQCGSHYPFHKPTSR QMREEGEAPTPLHNNCSGKHSGMLSLAAKLGVSTEHYMSPEHPVQRQMLQAVAEMAGLAP EEIPLGVDGCGVPVFGLAIDRLALAYARLGKPDGLSAERADACRRIIAAIRREPSYLAGS DRFDTRLAEATGGRIIGKMGAEGLFAVTVPDEGLGLVLKIEDGAQRALYCAMFEALVQLG LLHARETEALAEFREPKVTNWQGTVVGSIQADFKLT >gi|333607612|gb|AFDH01000033.1| GENE 41 42722 - 43174 250 150 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764796|ref|ZP_02171849.1| ribosomal protein S17 [Bacillus selenitireducens MLS10] # 12 150 9 146 146 100 36 2e-20 MSVAEAKTMDMSSILMGAYQVGDLINNSAEVADYLYWKQAVEQDFEAQRLVREFNKAKDL FEECERFGHFHPDYHAALEKVQAVQSRLEQVQSISKFKEAEERLDRLLYTISKTIATAVS DTIKVPGGLDSGSGGCGGSCGSGGSCSSCG >gi|333607612|gb|AFDH01000033.1| GENE 42 43393 - 45405 1163 670 aa, chain - ## HITS:1 COG:alr4703 KEGG:ns NR:ns ## COG: alr4703 COG1061 # Protein_GI_number: 17232195 # Func_class: K Transcription; L Replication, recombination and repair # Function: DNA or RNA helicases of superfamily II # Organism: Nostoc sp. PCC 7120 # 378 534 5 167 563 62 29.0 2e-09 MNYAQILDRMPPAVSRQLLGQDWIKSAVAHGMEAREAFGNEEVLRKLRATLQSDEEKLLR LIVVRFGCRPFTSAELEKETADWAAALVKTALTGLRRRGLIAAFRKSWGDRLFLLPQDGL RGWQAVFFGHGCNAVGHGDGAGSPWSIGSGDNAKLRQLYEQGDKPRQGLPLDLFLLLNYA DLHELPLTQRGALHKRHVQRMTALLGFDETDLAGCGLQFAHADTYPVSLAAALDFLQRLG LLYRSGDRLVLHKPRLRDWLAADEALQTDMLYRLWTEHRFPEEVDLQHAVCLLDKLAAGT QIRLSRLAAELNRREALTGGEEEGARFSLRLVQKWLQPLRAFGWLDWEPEDSSDVSVSWL YPVRYEQRANEERKTAKPSVFLYVQPDFEVMVSPECPFTVRWEIARFAELVKSDRMAVYR LTKESVQRGADHGTPPEQALELLENHARHGVPETVRLTITSWGEQYGRVVLGGVTLLRCA DAQLAEQISRHPKIGRLLLEKIGDADFIVPAGKMTDMMKLLDAAGFSPRHTADFQDEEEA PGPDGEAETETLKGIVYDQDPVQYLELETRLPSAEEMYPGMRDIPAVWYRDSRGYHASTI LKIARQAISWGAPVVAEVEGSAAAVWIPRKAVERGDELTIELSDGAGRNRTVQAGRISRI RILLPGLSGT >gi|333607612|gb|AFDH01000033.1| GENE 43 45380 - 47077 1451 565 aa, chain - ## HITS:1 COG:alr4703 KEGG:ns NR:ns ## COG: alr4703 COG1061 # Protein_GI_number: 17232195 # Func_class: K Transcription; L Replication, recombination and repair # Function: DNA or RNA helicases of superfamily II # Organism: Nostoc sp. PCC 7120 # 1 553 1 553 563 505 47.0 1e-142 MNPASDNALIVQQDLTVLAEADHERFESIRAELALFADLVKSPKHLHTYKITPLSLWNAA ASGLRSGDIIRFLKQESKNGISRRTEDELLSILDRYGLLRLVSDKGKLYLQSTDTELLAK LGGLKEFQRFFDREDADPTEAVQSSTLAVRPDMRGVMKQELTRLGYPVIDMAGYHAGEEL PAELKGVELRDYQRQAVECFHPAGGSDGGSGVLVLPCGAGKTVIGIAALTKLSCAALILT TNVTSVRQWIKEILGKTSLDESRVGEYSGDIKLVRPVTIATYQILTHRREKGGEQAHMEL FNSRDWGLIIYDEVHLLPAPVFRATADIQATRRLGLTATLVREDGREEDVFSLIGPKLFD MPWKRLEQEGWIARVTCTEVGVEMETGELQNYYEADKRSRFRIAGENSRKFLALTRLLAR HDGEAILIIGQYLDQLKEVARKLTIPLITGEMPQVDRQRLYEAFNTGLVRILAVSKVANF AVDLPDASVAIQLSGSYGSRQEEAQRLGRILRPKKGRNEAFFYTLVSRGTSEQEYALKRR IFLLEQGYEYRIEEGGSDELCANTR >gi|333607612|gb|AFDH01000033.1| GENE 44 47250 - 48020 642 256 aa, chain + ## HITS:1 COG:SA1160 KEGG:ns NR:ns ## COG: SA1160 COG1525 # Protein_GI_number: 15926905 # Func_class: L Replication, recombination and repair # Function: Micrococcal nuclease (thermonuclease) homologs # Organism: Staphylococcus aureus N315 # 53 175 51 175 177 107 48.0 3e-23 MNTKKALLLFILAALFLAACGSAQPKTDSGSFKETVLARYPELKTQKMTTAKVKRVVDGD TFELENGDKVRLIGCNTPETVKPNSPVEAYGKEASDYTKKRLTGTTVYLFNDAGDTDKYG RLLRYVFIEGESVMYNELLLQEGYANVMTIQPNVMFSDRFVKTEREARSQNKGLWGVKSP SSPAKTGDSPKGGSGKNPEAANQTAACPDPQIKGNINSKKEKIYHVPGSSSYEQTQAEAM FCTENDAKKAGFRKAG >gi|333607612|gb|AFDH01000033.1| GENE 45 48089 - 48523 559 144 aa, chain - ## HITS:1 COG:BH2605 KEGG:ns NR:ns ## COG: BH2605 COG0517 # Protein_GI_number: 15615168 # Func_class: R General function prediction only # Function: FOG: CBS domain # Organism: Bacillus halodurans # 1 136 1 136 142 135 52.0 3e-32 MPTVRDVMSTDCVTVTLQDNVYEIAVKMKQHDIGFIPVVEGSKLIGVVTDRDLVVRGYAE KHSGSTAVKKVISENLTTISPETDVQEAAKVMAQHQVRRLPVVEDGNLVGVIAIGDLAVR DKLEDEAGEALSRISEGRSTSSNK >gi|333607612|gb|AFDH01000033.1| GENE 46 48574 - 49812 1032 412 aa, chain - ## HITS:1 COG:BS_yhaA KEGG:ns NR:ns ## COG: BS_yhaA COG1473 # Protein_GI_number: 16078071 # Func_class: R General function prediction only # Function: Metal-dependent amidase/aminoacylase/carboxypeptidase # Organism: Bacillus subtilis # 20 403 8 391 396 381 48.0 1e-105 MKGRIVSNTWAGDTLIRQGEELDKEWEAMYETMVSWRRYLHQNPELSYKEVNTAAFVAEK LTEWGLDVRTGMGGYGLIADLQGNAPGPTVALRADMDALPIQDEKQCGYASKVPGIMHAC GHDAHTSTLLAAAKIWSTKKEQLKGRIRFIFQHAEEVTPGGAASMIEAGALDGVDVVYGV HLWTPLPIGVVGSNPGAMMAAADEFHFEIRGKGGHGGMPHQAIDSVVIGSHTVVNLQTIV SRTVSPIESCVVTIGSINGGTNFNVIAETCKMKGTTRTFDSVLRLQVKERVEDIVASTCK MYGAESVMDYRLGYPPLVNHPGEFERFREVASGMLPEDRVLTIEPVMAAEDFAYYLQQVP GCFIFVGAGNAQTGADYPHHHPKFDLDEKAMLTAGKLLTRMALHVLDETGTR >gi|333607612|gb|AFDH01000033.1| GENE 47 49949 - 50293 175 114 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764794|ref|ZP_02171847.1| ribosomal protein L36 [Bacillus selenitireducens MLS10] # 4 111 4 110 118 72 31 1e-11 MIIETKGFKGLKSDLAHLDEVTTKLGFVRGQWEYTRATYDLKMEDPTTKSDYYLRVNTRA ESGKLESPYAILYIEEAYIGRATFPHGLDYESPIPDAILNKAKQKLSQLQQLLA >gi|333607612|gb|AFDH01000033.1| GENE 48 50306 - 51487 1063 393 aa, chain + ## HITS:1 COG:BS_spoVE KEGG:ns NR:ns ## COG: BS_spoVE COG0772 # Protein_GI_number: 16078585 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Bacillus subtilis # 3 371 2 362 366 272 46.0 9e-73 MSTPRRGTPDFLLLFLTFALVCFGLVMVFSSSSVYASTKFNNPWYFATRQILFAVIGTFL MLFCMNIRYSKLKNWVKPGFLVVIAMLVAVLFFKGINGSRSWLPLGTFSLQPAEFAKLAV IVYLAQLISKKGDNIQHMKKGLMPAVLITAFIAFWIMLQPDVGSAAILILCASVVIFVGG ARVKHLFSLGVAGGLAASVFLGFYFLFNFKSASDHVGLRMKRFSAYLNPKDDVLDSGFQV MQSLYAFGHGGITGAGFGQSIQKLYLPEPYTDFIFAIIGEELGMIGSILFLLVYIIFLWR GLVIAVRCPDRFGMLTGVGIMTMIGITAIINIGGVTGTLPMTGVTLPLISYGGSSMMVTL ISMGIMLSLSREQNRLEKKEKVEKVTQTTRVYR >gi|333607612|gb|AFDH01000033.1| GENE 49 51597 - 51983 459 128 aa, chain - ## HITS:1 COG:CAC2085 KEGG:ns NR:ns ## COG: CAC2085 COG1302 # Protein_GI_number: 15895355 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 2 117 5 121 131 82 46.0 2e-16 MVEEIQTGNIRISDDVVATIAGLAALETPGIAAMSGGISEGFAKRLSGKNVQRGVSVEVG QVEAAVDLRVIVLYGSKIQDVCRELQLNVREAVENMTGLRIVEVNVKVEGVSFKEDEAAS LDDPTRVK >gi|333607612|gb|AFDH01000033.1| GENE 50 52180 - 53223 1048 347 aa, chain + ## HITS:1 COG:BS_yfkE KEGG:ns NR:ns ## COG: BS_yfkE COG0387 # Protein_GI_number: 16077859 # Func_class: P Inorganic ion transport and metabolism # Function: Ca2+/H+ antiporter # Organism: Bacillus subtilis # 5 347 4 351 351 255 46.0 1e-67 MRKNLFNIGLIVTFALSAVAHYMHWGTTIQFAISCLAILFVAGFLGKATESVAHYAGDRM GGFLNATFGNAAELIIAFFLVKDGMFDVVKASLTGAIIGNLLLVLGASVLAGGLKFKEQN FNIKLASHNASLMTLAVIALFIPAVFAKSLTQKETTQMSLIVAGVLIVAYILWLIFSMVT HKKELSDQVVEHSEPAWSKRTSILFLILATVMVGFESEWLVGTLEEFTSQFGLSELFVGA FLIAIIGNAAEHSAAVMMALKNKIGAAVEIAVGSSLQIALFVAPVLIFSSFFMGNTMDIV FTTYELVAIGVAVIISKSISQDGSSNWYEGVLLLAVYLILGVVFFLV >gi|333607612|gb|AFDH01000033.1| GENE 51 53272 - 53556 245 94 aa, chain - ## HITS:1 COG:BS_ylaN KEGG:ns NR:ns ## COG: BS_ylaN COG4838 # Protein_GI_number: 16078548 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 3 94 2 93 93 98 58.0 4e-21 MSSSDLLVSMNQKALNLLEEDAYKIEKLIEIQMENLTTRQCPLYEEVLDTQMYGYSREID FAIRAGLIPANVGKELLNKLERNLAKLYEALNKK >gi|333607612|gb|AFDH01000033.1| GENE 52 53702 - 53950 381 82 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_3786 NR:ns ## KEGG: Pjdr2_3786 # Name: not_defined # Def: phosphotransferase system, phosphocarrier protein HPr # Organism: Paenibacillus # Pathway: not_defined # 4 82 2 80 80 108 73.0 9e-23 MPSANNAAIVEISQTANQFRSSIVLQYDNKYIDVKSILGLFTTLLSSGNYELHVHGPDAD EAKKAMAEVFAKHQLAIQIVED >gi|333607612|gb|AFDH01000033.1| GENE 53 54054 - 55169 1180 371 aa, chain - ## HITS:1 COG:BH3246 KEGG:ns NR:ns ## COG: BH3246 COG2309 # Protein_GI_number: 15615808 # Func_class: E Amino acid transport and metabolism # Function: Leucyl aminopeptidase (aminopeptidase T) # Organism: Bacillus halodurans # 1 371 1 371 371 498 62.0 1e-141 MRDPRIQQLAANLVQYSLDVKPGENVWIEMYGSERELVRCLIEEVYARGGKPYVDLIDRR VLGSLIKSATKEQMQEWGEADLARMKRMDGYIGVRAGENVNEWADVPEEQMKLYSLYYQK PVHLEQRIKHTRWVVLRYPNASMAQLASKSTDAFEDFYFDVCNLDYGNMDAAMDPLKALM ERTDKVRLVAPGTDLTFSIKGIPAIKCSGQNNIPDGECFTAPVRDSVNGTITFNTPSIQS GVTFDNISFRFENGKIVEATSSDTARINEVLDMDEGARYIGEFSLGFNPYIQHPMKDILF DEKIDGSLHFTPGQAYEEADNGNRSSLHWDLVLIQRPEYGGGEVWFDDVLIRKDGRFVIP ELEGLNPESLK >gi|333607612|gb|AFDH01000033.1| GENE 54 55220 - 55924 564 234 aa, chain - ## HITS:1 COG:BS_yqeD KEGG:ns NR:ns ## COG: BS_yqeD COG0398 # Protein_GI_number: 16079625 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 53 215 33 195 208 85 28.0 1e-16 MKWLTFIRTKRFVYGMTIVLVIIAVLSILYRKSAWRHTGASMEQLTPWLISLGMLGKTLG IALVYLQTLFPFVPFVLIAGANVALFGIKWGFVVNYVMSVLGSVTAFIIARYFAHDWVER RLSSKPLVQQFNKKMEHHGFLYILMGRLIPVIPSSAISFGAGVTSVTFRQFALGTTLGKI PMVLLESLIAHDLFHFKAYKGRLFVLLAIFVILMVLGSLFKKRLDARKQDKPSS >gi|333607612|gb|AFDH01000033.1| GENE 55 56119 - 58134 1620 671 aa, chain - ## HITS:1 COG:BS_ytrP_2 KEGG:ns NR:ns ## COG: BS_ytrP_2 COG2199 # Protein_GI_number: 16080017 # Func_class: T Signal transduction mechanisms # Function: FOG: GGDEF domain # Organism: Bacillus subtilis # 474 666 6 197 199 185 48.0 3e-46 MSDKLHHPLPYYPVENAKKLDESSLEPYVLDLGRQGGVLSQRDELYQLFKDWIGRSARYL RNINGSLELFDSFGQIIGFYTAENFLHPLYRNGTAWTEELLEQTAFSQCKRHQRLVTVDG SKYNEGALRGCVTCAAPLYSPSGECVGTIGILAGPVQDHALLEALLESQILSLQQFSMSG HSARTALALSGQVNRSERELRKWEMLFEMTNKLHAQIDVNAVLTVVIDCIQELYPFVMLD LLLSQDHHNGALPFKLLRYQSGEEDICAKAFLEGELFVYEEELGDGVRRREIAAPLSGNQ GVYGVLHLKYTCDTVDPAELSFITLLADAAGTAFENAKLYEHSNLLVNELRLINDMTQKL TQSLSLHEIFDFACGELTDIFKGDFCCILQKEEEKERLVVKASNFNPLHYEHLELGTGYS GLVYDRKEAIIVSDYDPRFHVSSKLMDLSKSRSLMAAPILGGGEVLGVILVAHREPHYFS YDNFKLLQALCSHIGLAITNATLHAELQRLVIMDQLTGLYARHYLNNQVQEMQKKDFCGS LIVVDIDYFKQVNDTYGHQVGDQILMQVSGILASSIRDTDIAARWGGEELAVYLPKVGKQ QALRVAERIRERVMNETRPGVTVSCGVSDWFWEDDKISVESLFYKADMALYQAKHDGRNQ IVMDQSRSFTS >gi|333607612|gb|AFDH01000033.1| GENE 56 58452 - 59057 858 201 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169189545|ref|ZP_02849544.1| ribosomal protein S4 [Paenibacillus sp. JDR-2] # 1 199 1 199 199 335 82 7e-91 MSRYTGPKFKLSRRLGISLSGSGKELKRPFPPGQHGPGQRKKMSNYGMQLQEKQKLRLMY GVHEKQFRNLYSFASKQKGITGETFMQLLESRLDNLVFRLGFSNSRAGARQLVAHGHVTV NGKKVDIASYSVKTGDVIGLRERSRGLSVIKEALANRNYLPAYVEFNEAALEGKYVRLPE RSELPQEIDEKQIVEFYNRLS >gi|333607612|gb|AFDH01000033.1| GENE 57 59155 - 60420 355 421 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 [Phaeobacter gallaeciensis BS107] # 56 420 41 416 418 141 28 1e-32 MTMKDVWEKLSAEQKAEAERQVEILRRGAVEIVPEEELKLKIAESLADNRPLKIKLGLDP SAPDIHVGHTVVLHKLRQFQELGHHVQLLIGDFTGRIGDPTGKSETRKQLTEEDVKRNAE TYKKQIFKILDPEQTTVCYNSEWLSPLTFADVVELSAKLTVARVLERDDFSKRYTSGQPI HVHEFFYPLMQGYDSVALKCDVELGGTDQKFNLLMGRTLQKEYGVPAQVAIMMPLLEGLD GVNKMSKSLGNYIGIDEAPNEIYGKAMSVPDELMLKYYELATDLSHDELSALRSGIEDGN VHPRDAKMRLAATFVRMYHGEEAASEAERHFVTVFQQRALPDDIEEVELAAGELEEGGIR LVKLLVTLGLQATNGEAKRSIQQGGVRLNEEKVTDPNASVEVKDGDILQVGKRKFAKIKL A >gi|333607612|gb|AFDH01000033.1| GENE 58 60942 - 64040 2695 1032 aa, chain + ## HITS:1 COG:BH3229 KEGG:ns NR:ns ## COG: BH3229 COG0744 # Protein_GI_number: 15615791 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase (penicillin-binding protein) # Organism: Bacillus halodurans # 12 901 27 890 966 490 35.0 1e-138 MAKKLSFLQNPGVRKTLKVTFHTVKWLFVAFLVVGIMGGAAAFGYVSALVKNEPVRNKEE MRKKIEENAITGFVYFNDDAVIGQLRTEEDRRLAELAEIPQVVLDAVLAIEDNDFYKHNG VDVKGLSRAVTQKLLNEDVQTGGSTITQQLTRRVFLTLDRDEGRKAKEILLSLRMERLLS KDEILLAYLNKIPYGNGATGYNLFGIKAAAKGIFNIDDLKQLNVAQAAYLAGLPQQPSNY SAYTSSGAPNPTGLKNAITRQKLVLKRMREENKINEAQYNEALAFGIEASLAQRQQKAYA SYPYLMIEAEKEAVNLLLKQQNPDLDPEKDAAAYNEASKAMHTQLLRGGYQIYTSIDKTI YDSMQTIGKEAKNYSPTDSKKGEEQVGAVMMDSKTGAVLGMIEGRDFNKSQMNNAIQAVR QPGSTMKPIAAYIPAMESGKIQPASIIDDSPVILKDGAKGYHIPENWNHKYSGLITARKA LNQSYNIPAIKLFTDTVGIKEAWTFAKKLGITTIEKEDYNAQTGVIGGLKYGVTVKDMTG AYAAMSNKGLYNEAFMIRKMTDSTGKVIYEHEMKPTRVFSEETAYLITDMMRTVITEGTA TSIKKSFKFYGKIPVVGKTGSTQDDADAWFMGYTPNITVGVWAGYELPVNKLSKAGTQRA MNMWSLIMNAAVEKKPELFPDTSFKRPSTVVQATVSDVSGKLPSDLNRQSGHVVTDWFNR KYIPKTVDNSMKSMNTIEYNGINYIAQDQTPGDMVKSKFVIVREKSVNSLLKELSAVLNK LPAKNRRPLSFYKPKDYDEDAPSEIDPRKDDGSDPSAPSRVAATKSGGSVVITFQPSGNN DVVGYRLYRSDNGGPYIRQTGKVVMTGSDSKFTDSVSPASAQSYYVTAVDVAGRESAPGK ASSTGSNSSIDSGLVPGGGGSGTDGGSQNGGNGGSDQESDPKQTPSSPAGLTAKGSGSGL KLQWNENSSKDKVKRYNVYYAEKADGNYKKIDAALSAEYAISSVKHDGYYKVSAVNDAGE SRLSSAVKYAAR >gi|333607612|gb|AFDH01000033.1| GENE 59 64249 - 65973 1522 574 aa, chain - ## HITS:1 COG:BH3234 KEGG:ns NR:ns ## COG: BH3234 COG0365 # Protein_GI_number: 15615796 # Func_class: I Lipid transport and metabolism # Function: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases # Organism: Bacillus halodurans # 7 574 4 571 571 915 75.0 0 MNQLKGEVVDAVSQNGNLGNYEKARESFNWEEIESNFSWFDTGKVNMAYEAIDRHAESSR KDKVALYYSDQKRDESYTFSQLKTTSNQFGNVLRKLGVNKGDRFFIFMPRTPELYMALLG AIKIGAVVGPLFEAFMEMAVRDRLQDSEAVAIITTPALVHRIPTAELPNLKHVIVVGEDL DLQEGQVDFHKEMAQASEELDIEWVDREDGLILHYTSGSTGKPKGVFHVHNAMVQHYYTG NIVLDLKEDDVYWCTADPGWVTGTSYGIFAPWLNGATNVIRGGRFSPQDWYNTIQKYGVT VWYSAPTAFRMLMGAGDDVVNQFDLSSLRHVLSVGEPLNPEVVRWGLKVYGQRIHDTWWM TETGGQLICNYPSMPIKPGSMGRPIPGVEAAIIDDSGNVLPPNRMGNLAVRTPWPSMMRK IWNNPAKYEEYFRLTGWYISGDSAYMDEDGYFWFQGRIDDVINTAGERVGPFEVESKLVE HPAVAEAGVIGKPDPMRGEIIKAFIALREGFEPSDELKADIAKFVKEGLSAHASPREIEF KDKLPKTRSGKIMRRVLKAWELNLPTGDLSTIED >gi|333607612|gb|AFDH01000033.1| GENE 60 66180 - 66818 700 212 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_1918 NR:ns ## KEGG: GYMC10_1918 # Name: not_defined # Def: GCN5-related N-acetyltransferase # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 212 1 210 210 317 71.0 2e-85 MDHKKIYHSHSFVPPDLDAEITVEGPVSPDHLRGLQMHADLDAFRKPRDQHEALIEIAEL PEGRIIIARTGDWIVGYVTFHYPDEIERWSQGNMPDLIELGAIEVANSYRALGLGKKMIR LAFTDGQLENVITFTTEYYWHWDLESSGLSVWDYRKMMENLMKCVDMVWFATDDPEICSH PANCLMVRIGSKVPLASVEQFDRIRFQQRFMY >gi|333607612|gb|AFDH01000033.1| GENE 61 66855 - 68033 955 392 aa, chain + ## HITS:1 COG:BH3237 KEGG:ns NR:ns ## COG: BH3237 COG0123 # Protein_GI_number: 15615799 # Func_class: B Chromatin structure and dynamics; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Deacetylases, including yeast histone deacetylase and acetoin utilization protein # Organism: Bacillus halodurans # 1 391 1 381 389 419 51.0 1e-117 MKNESVFVFNEHEATYKFNEEHPFNPKRLLLTIDLLRKAGALNDSEIVTPRVATDDELLR VHQPAYIDAVKALSELSPSLEWVNSAAKYGLDTEDTPYFAWMHDVTSMVVGGSITAADTV MSGRAKRAFHLGGGLHHALQSKGAGFCVYNDASAAIAHLTEHYNAKVLYIDTDVHHGDGV QWSFYSDPRVCTFSIHETGKYLFPGTGDVTERGEGEAFGTCVNVPVEPYTEDDSWLESFE AVLVPLIERFKPDIIVSQHGCDAHALDPLAHVHCSMRIYKRMPELIRELADKWCDGRWVA LGGGGYDIYRVVPRAWSLVWLVMTGHPLLQELESNPLLPLPAGWLAEHQPGSPVKLPATW LDAVDDWEPIPRRDIIAEKNKKTVEIALLYLK >gi|333607612|gb|AFDH01000033.1| GENE 62 68192 - 68890 732 232 aa, chain - ## HITS:1 COG:BH3238 KEGG:ns NR:ns ## COG: BH3238 COG0775 # Protein_GI_number: 15615800 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside phosphorylase # Organism: Bacillus halodurans # 2 232 1 232 233 216 51.0 2e-56 MINKIGLIGAMNEEIELLVGGMSGVTVTNKAGITYREGQFEGKFVVVCKSGVGKVNAAVC TQILIDGFGVDAVLFTGVAGALDPELNIGDIVISTTCMQHDMDVTPLGFPRGVIPYEEVS VFKADPQLVELADAASRELFQGRTKQGLVLSGDQFVASRDKVAELHQELGGTCTEMEGAA VAQVCSMNKVPFVVIRSMSDKADGSAHVNFAEFTKQASENSHRIIEHMVRSL >gi|333607612|gb|AFDH01000033.1| GENE 63 68930 - 69934 939 334 aa, chain - ## HITS:1 COG:BH3241 KEGG:ns NR:ns ## COG: BH3241 COG1609 # Protein_GI_number: 15615803 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus halodurans # 1 333 1 333 333 430 66.0 1e-120 MTVTIYDVAREAGVSMATVSRVVNNNPNVKPQTRKKVFEAIERLGYRPNAVARGLASKKT TTVGVVIPDISNSIFAEVARGIEDIANMYHYNIILSNADKKKEKEIRVINTLLEKQVDGL LFMGGVVTEDHINAFRTSSVPVVLCGTADEQNVMPSVDIDHEKAAYDAVQLLIESGHRTI AMISGPLQDPANGFARYQGYKKALEHAGIEVNEDYVRLGNYRYESGIDATDYFLKLPTRP TAIFSATDEMAIGAIHKIQDEGLSVPKDISVMSIDNIRMASMVRPQLTTVAQPMYDIGAV SMRLLTKLMNKETMELTQVVLPHEIIKRSSVAPR >gi|333607612|gb|AFDH01000033.1| GENE 64 70190 - 70636 320 148 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_3801 NR:ns ## KEGG: Pjdr2_3801 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 1 133 1 135 137 105 42.0 6e-22 MQKGYCCGQPIHLCLRTVVFQQKVEIENVPIYSCEACGKSVVYSSVKPKVTELIDTLGPK PEKQILRFEDVSEIACLIVRLACSSEDGYGFKQAVEERVNELLDLLLLATSVGDMGWAGE IRSRLAQISEHMLSDDRLQEVFADRTSG >gi|333607612|gb|AFDH01000033.1| GENE 65 70802 - 71347 577 181 aa, chain - ## HITS:1 COG:lin2358 KEGG:ns NR:ns ## COG: lin2358 COG0693 # Protein_GI_number: 16801421 # Func_class: R General function prediction only # Function: Putative intracellular protease/amidase # Organism: Listeria innocua # 6 174 3 171 173 228 61.0 4e-60 MTVQDLKGQRILAFVDEEFEDLEMWYPVLRLREAGAVVDIAGPKAGEIYHGKYGVPITTD VAFGDVSAADYDGLYVPGGWAPDKLRRYADVLRFTREIHEAQKPIAQICHAGWVLISAKI VEGYTMTSTPGIRDDLENAGAIWVDEEAVVDRNIVSGRRPPDLPAFMKAFIEVLIQKKAS N >gi|333607612|gb|AFDH01000033.1| GENE 66 71379 - 73109 1997 576 aa, chain - ## HITS:1 COG:BH3073 KEGG:ns NR:ns ## COG: BH3073 COG1080 # Protein_GI_number: 15615635 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) # Organism: Bacillus halodurans # 4 568 7 568 572 505 47.0 1e-143 MFKGIGASSGIAMGPAYVIPAWDWEFPDKMVDATDLSFEFERLYDGIRSSKDELEHIKQE IRDVLGQEQSYIFDAHLAILEDPVFMNEIQGIISRQYKAAEVAVKEVIDKFVEMFDVLDD DYMKERAMDIKDVGNRLLKHLLGSGDDTPPPTDHSYVLVAKELTPSQLVHLDPARVLGIV TMMGGLTSHTSIMSRAMGIPFVLGLEGKLIRPIQNGDLMIVDGEEGIVYVNPDSSTVELY ESRKTDWLMHRERLQEIAHVPSMTQDRKQVRLAANISSIKEIDQVLKNGAVGVGLFRSEF LYMDRDSLPDEEEQTEVYKQAAVKLDGRPLIIRTLDIGGDKKLDYLPLQVEENPALGCRA IRISLDRRELFKTQLRAILRASHFGQVKLMYPMISSLGELREANALLAEAKQELKSRGKP FNPDIEVGLTIEVPGAALIADVLAKEVDFFSIGTNDLIQFVLAVDRMNDSIAHLYNPYHP AVIRLLKLTIDAAKAAGIPVAVCGEFAGDIRALPLWLGLGIEELSMSVQLILPIKHRLLT SNHAECERLLQEVLQCGTSEEIEQVLRQADSRSSAS >gi|333607612|gb|AFDH01000033.1| GENE 67 73102 - 74994 1740 630 aa, chain - ## HITS:1 COG:CAC1353_1 KEGG:ns NR:ns ## COG: CAC1353_1 COG1263 # Protein_GI_number: 15894632 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Clostridium acetobutylicum # 8 372 12 370 409 307 43.0 5e-83 MNWMGNLQQFGRSLMLPMITLPVAAVLIRLGILPWDSMGAAWLGDMMLLAGHTIFTYLPL VFAVGVALGLTENAGIAGLSALMSYFLFTVLTQHQLGEAFQLGVAGGILIGLLSAVAYHR CKRIQLPEYVQFFGGPRMVPLIMGVVTLVLSILMIKLGPVLENGMEQLTAWVLSLGGFGA FLYGIAHRLLVPSGLHYILNNFFWFQLGAYKEPNGDMVYGDLPRFFAGDPTAGAYMAGLY PIMMFALPAIAFAIIHEAREDLKPHVRVTFMTAALTSFLTGVTEPIEFAFLFVAPYLFVI HAILSGFAMWIAYALNISHGFSYSAGAIDFVINEHLSRNGWMLIPIGLVFGAVYYVMFRY AIRRYRIPTPGREEGSSLEEWAGDIPYRAPLIVQALGGKGNIKKIEACITRLRLTLESDR LMDIAALKHLGAAGVIRLGGGNVQVVFGTFSELIREEIMKLLRKDIQLVLFSSPMAGRMI PLEDVPDRIFAGKIVGNGVAFIPDKGELLSPVAGKIMHVYPTMHALGIQTEEGLEVLLHI GIDTSTLTGNFFEAQVQPGDEVEAGQLLIRFNYNQLKKHAKSLATPMVITNSDRVKSWSF APYKSVKKGQASVMSVVLKKPEQSGGTSNV >gi|333607612|gb|AFDH01000033.1| GENE 68 75130 - 75882 755 250 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MYNQYQNQAGIGSQSQYQNKFQPTGYVQSSYGQNQFQNSQYGSYQNPQSFHTANYRGNQP GHDSYLRSDSQTPAQQQGFGQASYGLTQSFGSQAYGNQGNQSYTSQQQSYGQFASPQSYH TANYRGDQPGHDSYLRSDSQTPSQQGYGQASYGLSQSAIGQGYGSQQNYGSQSYGQSYGQ GYGTQSYSQAASPQSYHTANYRGDQPAHDSYLTSDSQTPAQQQFAGYSSSVGSAQSGRFN TGIPYTTGTF >gi|333607612|gb|AFDH01000033.1| GENE 69 76077 - 76502 517 141 aa, chain - ## HITS:1 COG:BH2141 KEGG:ns NR:ns ## COG: BH2141 COG1832 # Protein_GI_number: 15614704 # Func_class: R General function prediction only # Function: Predicted CoA-binding protein # Organism: Bacillus halodurans # 5 134 4 133 137 142 57.0 2e-34 MPFENPSRDEIKTLLASAGPIAVVGLSDNPERVSHMVSAAMKSRGYEIIPVNPNADVILG GQSYASLSDIPGNVDIVNVFRRSDQVVPIAEEAVRMGAKVLWLQQGVYNEEAAEIAQRGG LTVIMDRCIKVEDAILNPRGN >gi|333607612|gb|AFDH01000033.1| GENE 70 76555 - 77370 804 271 aa, chain - ## HITS:1 COG:BS_yvpB KEGG:ns NR:ns ## COG: BS_yvpB COG4990 # Protein_GI_number: 16080547 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 52 266 37 246 250 122 34.0 1e-27 MRIIWRGMKVTFGFFLILGLLFSGGFMSVMLYAKISGQDVQTVMAMDAKLEKQPLPEPEQ PPAAEQVPEQRKTKAMIDAPVIAQKPELPSGCEITSIAMMLHYKGIKLDKMQLYDEMPKD PTPIVWNKDGTIASWGHPNIGYVGDGTGKSKGFGIYHKALFPLLKSHIPSAVDLTGESFD AYEKQIANGRPVVVWTTIGFTMPTRWSEWNTSIGPIRATFSEHAVLMVGYDETSVYVNDP WTGSKNVQLDKKLFIGIWEAMGKQGLSYTAD >gi|333607612|gb|AFDH01000033.1| GENE 71 77384 - 78691 1223 435 aa, chain - ## HITS:1 COG:DR1096 KEGG:ns NR:ns ## COG: DR1096 COG0128 # Protein_GI_number: 15806116 # Func_class: E Amino acid transport and metabolism # Function: 5-enolpyruvylshikimate-3-phosphate synthase # Organism: Deinococcus radiodurans # 3 431 31 456 462 334 48.0 2e-91 MNSMKAIVKATPNLQGEIQALSSKNYTTRYLLLAALADGTSTIHYPAHSEDSDAMRRCIR DLGAVIEEDEYKMVIKGFGKNPLPIKELNVGNAGAVLRFLMSTAALCQSEVTFINQYPES LGKRPHMDLIETLEQMNVQVEHNEGRLPITIKGGQPRGGKITVSGSVSSQFLSSLLFLTP LLQEDSEIEVLHDLKSKVIVGQTLEVLEQAGIRVEASEDLMHYRIPGNQSYRAQEYVVQG DYPGSAAILAAAAVTRSDVTVHRLDENSRQGEKACVDVLRAMGVSLTHKDGIVRVQGTGK LKAGEFDGDHFTDAVLAMVAAAVFAEGTSRFYNVENLRYKECDRITDFLNELRKAGADVE ERQSEIIVHGRPEGLEGGVEINAHYDHRVIMALSVAGLRSKQGLVIRDAHHVAKSYPQFF DHMISLGAHIELTNE >gi|333607612|gb|AFDH01000033.1| GENE 72 78740 - 79099 451 119 aa, chain - ## HITS:1 COG:lin2187 KEGG:ns NR:ns ## COG: lin2187 COG0239 # Protein_GI_number: 16801252 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Integral membrane protein possibly involved in chromosome condensation # Organism: Listeria innocua # 6 119 3 116 118 68 38.0 3e-12 MNAGWMNVLLVGAGGFVGSIARYKLAGWVQSRSASPFPFGTLAVNLTGCFFLGWLFGHVT DAALLIGLGTGFTGAFTTFSTLKLDSWKLRKKKLFNLDMIYLAVSYLAGIGLAFAGFYI >gi|333607612|gb|AFDH01000033.1| GENE 73 79096 - 79473 379 125 aa, chain - ## HITS:1 COG:lin2188 KEGG:ns NR:ns ## COG: lin2188 COG0239 # Protein_GI_number: 16801253 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Integral membrane protein possibly involved in chromosome condensation # Organism: Listeria innocua # 6 113 6 113 129 78 45.0 2e-15 MKSWIIGTAGVFGALSRYGLSVLWNEGNGSFPWGTLACNMIGCILLGYFSEALLPKWPQE LRTAVTTGFIGAFTTFSTFSMETVRMLRDNQVPAALLYIGVSLLGGLAAVSLGTAAAHRR KEKAL >gi|333607612|gb|AFDH01000033.1| GENE 74 79606 - 79899 301 97 aa, chain + ## HITS:1 COG:BH2920 KEGG:ns NR:ns ## COG: BH2920 COG0607 # Protein_GI_number: 15615483 # Func_class: P Inorganic ion transport and metabolism # Function: Rhodanese-related sulfurtransferase # Organism: Bacillus halodurans # 1 94 8 102 123 75 43.0 2e-14 MNKIQPSELKARLAAGEPLCVIDVREPEEVAAGQIAGAKSIPLMEIHTRLHEIPKEGEVI LVCRSGNRSGKAYDFLESQGFANLKNMEGGMLAWEQL >gi|333607612|gb|AFDH01000033.1| GENE 75 79925 - 80431 312 168 aa, chain - ## HITS:1 COG:XF1335 KEGG:ns NR:ns ## COG: XF1335 COG0703 # Protein_GI_number: 15837936 # Func_class: E Amino acid transport and metabolism # Function: Shikimate kinase # Organism: Xylella fastidiosa 9a5c # 1 146 13 159 180 110 38.0 2e-24 MGTGKTTVGLKLADRLGWPMIDTDEEIVKKAGMSIPELFATHGEAHFRTLEREVIRETLA GSHRVISTGGGAVLAKENRACMSERGFVAALSASLETIVERVKNDSNRPLLQGSGLEEKV RTMLQERQDAYRFADLTIDTSPLAADDIAEHIFNAWTKERLKREELSG >gi|333607612|gb|AFDH01000033.1| GENE 76 80657 - 81001 111 114 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_3809 NR:ns ## KEGG: Pjdr2_3809 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 1 98 1 97 98 101 53.0 1e-20 MMPHPRIPDPGRNTSGRLSQMLQPSYMLCRDDVVWALEFIRKKMAEQDPRLKELTQPRLL KNFESFAEVSMMLVHRRSAFDQEADRIKSCLKEASYGLFENEPLSERDSSPAND >gi|333607612|gb|AFDH01000033.1| GENE 77 81092 - 82504 1635 470 aa, chain - ## HITS:1 COG:lin1413 KEGG:ns NR:ns ## COG: lin1413 COG0362 # Protein_GI_number: 16800481 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphogluconate dehydrogenase # Organism: Listeria innocua # 1 467 1 467 472 685 70.0 0 MSKQQIGVIGLAVMGKNLALNIESRGFTVSVFNRSPEKTKELLEEATGRNLVGTFSMEEF VQSLETPRKILIMVKAGQATDATIEQLVPLLSEGDILIDGGNAYFPDTQRRNKELEARGI RFIGTGVSGGEEGALKGPSIMPGGQKDAYKLVEPILTAISAKVNGDPCCTYIGPDGAGHY VKMVHNGIEYGDMQLICEAYQLLKDVLNVSTEELHEIFTEWNKGELDSYLIEITRDIFTK YDEETGKPMVDVILDSAGQKGTGKWTSQSSLDLGVPLSIITESVFSRFLSAMKEERVAAS KVLNGPAVKPFEGKREEFIEAVRKALYASKIASYAQGFAQMRAASEEYNWNLSYGEIAMI FRGGCIIRARFLQNIKDAYDRDPELRNLLLDDYFKNIVENYQDAWRNVVSVAVTRGIPAP AFASALAYYDSYRTERLPANLLQAQRDYFGAHTFQRVDKEGTFHYNWLES >gi|333607612|gb|AFDH01000033.1| GENE 78 83069 - 84052 782 327 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_2390 NR:ns ## KEGG: GYMC10_2390 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 324 1 325 329 261 41.0 2e-68 MKTAKLAIFFVLIYVPFAWTNKFDAKAQFQMLFLETKYDAAVNAAVQDGAAALAVNEKQG EEARYESSKKVRVNRKEAVDSFYKTFFSNFGVSENAAGRQVLDSYLSALLIVGYDGCYSY TFESYTGEDGYERSRRLEGPKRPYVYQDPTGEVIAFTLDEYVTVKNASGTGWIEGFRSEI QPKTQTALLKPGARFDEVRRGAIINTIQRELENAIREHNIQTRRLGAAYTFTLPLLSDEE WSNTIDDVGMLAFVQGIPIGYRTYNNYALGGARIVKRPVFYGYRQSNLPYFTSSRCPRPQ EILETFTSSKAAAAAGYYPKECVNGRT >gi|333607612|gb|AFDH01000033.1| GENE 79 84039 - 84578 440 179 aa, chain - ## HITS:1 COG:no KEGG:PPE_02546 NR:ns ## KEGG: PPE_02546 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 1 178 2 183 184 146 42.0 4e-34 MDTLSKAFVLILTVMLLYIYPLSDSAAREDDLSRVIAFETMTRFVDNVRDKGRLTPAMYE QFQKELTTSGQEFDVKMEHMHKRYVPVYDDQGRFAEKYTVEDEAFYKAQILPVLFPENSL PPNHADRTYKLGAGDYFTVTVRSPNRTPAVVWQDALNGTNTPGGQLYMPYGGMVRNEDS >gi|333607612|gb|AFDH01000033.1| GENE 80 84607 - 84993 297 128 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNHAARSMLFAGVSVCMFVSALVTGMMLLQNVRGAIADTYLSRKLLDYNQQPANAALEEV LVKGSDLIMSMYLNAGEPYDIMVNGKRYPGGREKEETDPAGIDPAAAYRFYAVRDTGGTL KRIVYTTP >gi|333607612|gb|AFDH01000033.1| GENE 81 85002 - 85481 510 159 aa, chain - ## HITS:1 COG:no KEGG:PPSC2_c2905 NR:ns ## KEGG: PPSC2_c2905 # Name: not_defined # Def: protein # Organism: P.polymyxa_SC2 # Pathway: not_defined # 1 158 1 158 159 169 62.0 3e-41 MGNAQKALIMAAGFFLAIALITIAVVMFISAQDATKAAQNNFSDIQTELSQTAFTVYDNT VVSGSQVVNALRKFADKEQFGIQVQTGKNPVGSWYTNKIDTTSPSSSNYGTVIASISRDA VANATLESHMDYVNPSGKFKAHIIKDKSNVIRAIEFMQQ >gi|333607612|gb|AFDH01000033.1| GENE 82 85503 - 87584 1281 693 aa, chain - ## HITS:1 COG:no KEGG:PPSC2_c2906 NR:ns ## KEGG: PPSC2_c2906 # Name: not_defined # Def: protein # Organism: P.polymyxa_SC2 # Pathway: not_defined # 1 692 1 693 694 507 39.0 1e-142 MPLRDWLLAVALFSGGVACVIWLLYVYAVKRRAKLSGYGEDELQKLLSPLNGNGRKQIER LYGKCYEIISKTPGISRYTQRIRRRIAPLYSYDESVIRMETGRITLLALLIGWLTAGFVF LFYPDVSYMLMILLGSLVLHGILIDTLVHRAEDRLLRQMTEFLSDVRHFYHQHGMVDEAV YDAAQIAPRQLSLHADAVYGTLTSDHPESSLEIYYEHAPNRFLKSFAGVSFLVREFGDKL LPHGSMYLHALSKITSEIRLEILRKEKLHYLLKGLAIIAISPILAAKPIETWARNNFPAM DEFYTGAAGFAVKTGIFVLIIVCFVLLRKLQDTAEEAGKRRTGQRPPEQKWLGNRLVNAV TQRFVPAEHSMERGRLQKLLREANSPLLLEWLTLRRLLTGLACFLLVLGMFLIMQRLTLQ QVYFSPTRNQAMFGSLSPQEKRKALEAAAFDRNVIQKLERSGRELREMIAEEMRQQGFQS DPAALNTAGERIKAKLDSIAGAYLSWRELLFCFISGWAGYHSPVWLLHMQKRMRRMEMKN EVDQFYTLLTILAHFERMSVEHMLEWLERFAVLFQPPLSACLLDYEAGAEEALEKLKEEA AYAPFVRLVERLQAAVNHIPVKQAFDDLEAEQQYHFEQRKQDYERMIETKAGWGRWIGFA PMYALVFLYLVIPLVYMSMQQMNLYYQQIGKIS >gi|333607612|gb|AFDH01000033.1| GENE 83 87571 - 89478 1103 635 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_2385 NR:ns ## KEGG: GYMC10_2385 # Name: not_defined # Def: AAA ATPase # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 32 628 31 631 636 647 54.0 0 MPTDRLNLALIFMVVIFAAVWFITKTGGWRGRRPSGPRRGKSYSIEAMTAFIKEAFAEIT AGGGSELRLSEEEYRRSRNKRLQLKRALKGCGHGDLKDKRYVKSVMLDLLTGVYGLGETT IHLSLPFHKPEQLATQDRFDILLHLYRKKYGYNGLHELIRRHKLDAVKHVIEDGRTPSYI VTAEEIAHVFRKEAGLLSFQDKLEIVVQRIYQHYKGFGVIDAIREMNIDGVSGGVSGALP DSAGHRGAPLAEREADGNHRHRKETASFDSVWVFYRGKPIHFSFLSFGSSEELRRVCQNI YKYNYPGQLSETNGYKVNDMKDGSRVVVVRPPFSESWAFFVRKFDLPNALLDQLVQGGNA GLAVELIRHLVKGCRITAVTGAQGSGKTTLLMAMVQSISATLTLRVQEMAYELHLRNLYP QRNILSFRETDHITGQQGLDVQKKTDGAVHILGEVATDTVAAWMIQMAQVASLFTLFTHH AKTFASLIDSLRNSLLKTGMFQDEVMAEKQVIRVIHFDIHLRKSADGTRFIERITECVPL DSDLYPSEKAGMTDKDRVEFPGFLDDASEFFRRTTDRKLYEQRNIVEYRDGAYRVCRPIS LRNTEEMLDHMTPADARAFERFLETHWGGDVIAAS >gi|333607612|gb|AFDH01000033.1| GENE 84 89485 - 90315 507 276 aa, chain - ## HITS:1 COG:no KEGG:BpOF4_21114 NR:ns ## KEGG: BpOF4_21114 # Name: not_defined # Def: hypothetical protein # Organism: B.pseudofirmus # Pathway: not_defined # 1 264 1 261 273 182 35.0 1e-44 MSQVAFWAPVRGHGAATSNVLAVSTMIALDYYARIMITHTKRTRTALENAFGRPSSDGNL LSFSEYGLDALERLLQSDKMTPETIQDYTKPIVKDRLDLLPGSRKPLADPDCFREEALPY IVNSASRYYDLTFVDVGDGYKEGSSEAILRNSDLIVVNLSQNLELLERYFNKELWTESLQ NKPLLLVLGDYDGSSRFNAVNLARKFKWRQPLYTVPHCTGYLDACSDKNVLEFFLRSRNA GPGHPSYAFITEVRKLTKALLHRLGLDSKLMQERGA >gi|333607612|gb|AFDH01000033.1| GENE 85 90312 - 91019 439 235 aa, chain - ## HITS:1 COG:no KEGG:PPSC2_c2909 NR:ns ## KEGG: PPSC2_c2909 # Name: not_defined # Def: protein # Organism: P.polymyxa_SC2 # Pathway: not_defined # 7 233 8 236 237 77 27.0 3e-13 MKLLCVGAKEHSDLLLGICRLAAVGGRRVLLIDGTASRRLSCLVAPEPVPELVQYDEIDV ACHFASLDEALEHTAASGSVLEEYDIVMVDTDRADFPGAAGAYPFEGLFLTTAYDKYTMR RTAELICSLNDVCQVNILTSTVIIRDAVECGIDEAYVDKVLAPLPFITPDEYHKLPFDEV DLAVRIDSEYQGKVGIRRMSRAYRNVLLAVTNEITGEDRSVLKRMIKQAMRRKTG >gi|333607612|gb|AFDH01000033.1| GENE 86 91051 - 92136 796 361 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_2382 NR:ns ## KEGG: GYMC10_2382 # Name: not_defined # Def: SAF domain protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 349 1 339 367 179 33.0 2e-43 MSIIRQRTKHLIYSGLIGALTAGLLASGGFVYTGLQHRKKLTELEYRYQADLSEAKSSTA KTERRKVVVLTRDIEAGTRLEDEDIKYLEMNAADAPAGSDLDLRQVAGRTFKLAGVKNTP VLASMLYEEGMLPKDVRQEEFNVIGLPSLLKKDDFVDVRISFPTGQDYIVLAKKRVDNVS ESTVWLKLSEKEILDMSSAVVDAYLHGAKLYSLPYVDPQMQDKAEPTYPVNAKVLELIRT DPNVLETAKLDLMKSMRLLLDKDLQNMDDASKQKINAGINSGRTGGNPAGIGAVQGEEPP SVFGPSTRPSAKPEVSAKPGGSSPGLTGSPDKMPTESVGPETPPSEIRERQEDIFREAVQ P >gi|333607612|gb|AFDH01000033.1| GENE 87 92153 - 93652 1086 499 aa, chain - ## HITS:1 COG:CAC0404_1 KEGG:ns NR:ns ## COG: CAC0404_1 COG0515 # Protein_GI_number: 15893695 # Func_class: R General function prediction only; T Signal transduction mechanisms; K Transcription; L Replication, recombination and repair # Function: Serine/threonine protein kinase # Organism: Clostridium acetobutylicum # 12 259 23 272 306 204 41.0 3e-52 MKPDRGRLYAGDILGSRYRIVSTVGRGGMGTVYLAEDLKLKGKRWAVKETLQQVQDYQRF VDEAEMLIRLHHAHLPGIVDYFPPDDEGYSYLVMDYIAGETLAERFSRTDGQVGVAAAVN YALQLCDLFHYLHDELPVPMIYRDLKPSNIMIDGQEQVRLIDFGIARHFKSGRQADTVQI GTIGFAAPEQFQQLQTDRRTDLYSLGAVLYYLLSGGKYPYSSGFPLARLNEEVPHSLSVI IEKLLEHDPDHRYPNARELREALSGVYAALCGGEGPPARSGGFLGPVVIAVCGTGRGVGC THTAVLLAHFLARKRRTVVLAEANASAHFSRIEAVYEGSDEPLCGSAAFDLRGVRYAKAG DGLDMIGTLSGSYDFVVLDLGSYDETEWFGEFMRAAVQVVVGTGCEWKRRDIAKFFRSYP VPEPAKCSLFVPLASAQTLRDIRRMLPDVRLLGLPAHTDPFCHQQVTAELLDGWLGLPEP RTRGNGLFMRRWFRARVPK >gi|333607612|gb|AFDH01000033.1| GENE 88 93849 - 94499 597 216 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_3811 NR:ns ## KEGG: Pjdr2_3811 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 19 216 1 198 198 233 66.0 6e-60 MSEISVKEANRSLREGIAVSKNHEVEYCNLELRFDRRLIRQFIKALIQEGYSLYWNENDH QFVISIRSGRKLVKLKFERIGERYKIVGNYSFKDEKLAEMMEKLIGDTRGHAVVKRFKDR QILIENIMFGEIIRMVEISGIEHKVLFQKEPVITFEEMLQAFRSRRIEERIPVLRLELDY ELAVLNEAIQKGDVQAVVDSKEKLIELRQEMLLLEL Prediction of potential genes in microbial genomes Time: Sun Jul 17 08:20:33 2011 Seq name: gi|333607359|gb|AFDH01000034.1| Paenibacillus sp. HGF7 contig00074, whole genome shotgun sequence Length of sequence - 250424 bp Number of predicted genes - 243, with homology - 216 Number of transcription units - 144, operones - 60 average op.length - 2.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 865 792 ## Bsph_3429 hypothetical protein - Prom 929 - 988 6.6 2 2 Tu 1 . - CDS 1481 - 1756 171 ## - Prom 1898 - 1957 3.5 + Prom 2333 - 2392 4.1 3 3 Tu 1 . + CDS 2592 - 3080 378 ## COG5577 Spore coat protein + Term 3091 - 3135 11.2 - Term 3070 - 3130 19.4 4 4 Op 1 . - CDS 3166 - 3822 618 ## COG2120 Uncharacterized proteins, LmbE homologs 5 4 Op 2 . - CDS 3849 - 4193 390 ## GYMC10_3722 hypothetical protein - Prom 4268 - 4327 7.7 + Prom 3865 - 3924 2.7 6 5 Tu 1 . + CDS 4137 - 4259 72 ## + Term 4355 - 4382 -0.1 - Term 4338 - 4375 4.7 7 6 Tu 1 . - CDS 4383 - 7847 3006 ## COG0642 Signal transduction histidine kinase - Prom 7932 - 7991 5.5 - Term 8014 - 8059 7.4 8 7 Op 1 . - CDS 8116 - 9003 703 ## BBR47_12300 hypothetical protein - Prom 9029 - 9088 6.6 - Term 9055 - 9086 -0.9 9 7 Op 2 . - CDS 9099 - 9617 507 ## Pjdr2_0349 transcriptional regulator, TetR family - Prom 9645 - 9704 12.3 - Term 9695 - 9732 7.5 10 8 Tu 1 . - CDS 9749 - 10678 1178 ## COG1227 Inorganic pyrophosphatase/exopolyphosphatase - Prom 10739 - 10798 6.5 - Term 10713 - 10744 -1.0 11 9 Tu 1 . - CDS 10806 - 11618 658 ## COG0500 SAM-dependent methyltransferases - Prom 11741 - 11800 5.0 + Prom 11479 - 11538 3.2 12 10 Tu 1 . + CDS 11772 - 12227 536 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Prom 12234 - 12293 3.4 13 11 Tu 1 . + CDS 12332 - 12610 270 ## + Term 12649 - 12686 7.1 14 12 Op 1 . - CDS 12851 - 13144 286 ## GYMC10_6114 hypothetical protein - Prom 13168 - 13227 2.4 15 12 Op 2 . - CDS 13232 - 13387 243 ## - Prom 13475 - 13534 5.3 - Term 13672 - 13709 8.5 16 13 Op 1 21/0.000 - CDS 13766 - 15040 1137 ## COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes 17 13 Op 2 . - CDS 15066 - 17915 2314 ## COG0567 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes - Prom 18051 - 18110 6.3 18 14 Tu 1 . - CDS 18223 - 19044 693 ## COG0491 Zn-dependent hydrolases, including glyoxylases + Prom 19051 - 19110 5.7 19 15 Op 1 . + CDS 19255 - 20733 1394 ## Pjdr2_2817 GerA spore germination protein 20 15 Op 2 . + CDS 20743 - 21825 881 ## GYMC10_2932 spore germination protein 21 15 Op 3 . + CDS 21818 - 22915 812 ## GYMC10_2931 germination protein, Ger(X)C family + Term 22929 - 22990 20.4 + Prom 22946 - 23005 2.1 22 16 Tu 1 . + CDS 23074 - 23760 834 ## COG1988 Predicted membrane-bound metal-dependent hydrolases + Prom 23802 - 23861 6.5 23 17 Tu 1 . + CDS 23884 - 24492 460 ## GYMC10_0282 hypothetical protein + Term 24499 - 24539 10.1 - Term 24487 - 24527 11.3 24 18 Op 1 . - CDS 24532 - 24723 238 ## BBR47_45910 hypothetical protein - Term 24758 - 24794 1.0 25 18 Op 2 . - CDS 24892 - 25089 218 ## COG4551 Predicted protein tyrosine phosphatase 26 19 Op 1 . - CDS 25223 - 25771 261 ## 27 19 Op 2 . - CDS 25785 - 26375 318 ## GYMC10_2913 TmrB 28 19 Op 3 . - CDS 26414 - 27196 550 ## COG0500 SAM-dependent methyltransferases - Term 27222 - 27266 2.5 29 20 Op 1 . - CDS 27288 - 27710 359 ## BMD_3599 hypothetical protein 30 20 Op 2 . - CDS 27750 - 28373 686 ## COG3576 Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase - Prom 28410 - 28469 5.2 - Term 28457 - 28498 9.1 31 21 Op 1 . - CDS 28521 - 29957 1328 ## COG2312 Erythromycin esterase homolog - Prom 30014 - 30073 3.0 32 21 Op 2 . - CDS 30088 - 31524 1329 ## Amet_0693 hypothetical protein - Prom 31616 - 31675 2.7 - Term 31683 - 31717 5.3 33 22 Op 1 . - CDS 31731 - 33851 1620 ## COG2409 Predicted drug exporters of the RND superfamily 34 22 Op 2 . - CDS 33890 - 35386 481 ## GYMC10_2747 monooxygenase FAD-binding protein 35 22 Op 3 1/0.071 - CDS 35383 - 36129 404 ## COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase 36 22 Op 4 . - CDS 36116 - 37264 880 ## COG3424 Predicted naringenin-chalcone synthase - Term 37587 - 37615 -0.3 37 23 Op 1 . - CDS 37624 - 38208 554 ## COG1434 Uncharacterized conserved protein - Prom 38237 - 38296 2.3 38 23 Op 2 3/0.036 - CDS 38307 - 39575 1259 ## COG2807 Cyanate permease 39 23 Op 3 5/0.036 - CDS 39572 - 40264 686 ## COG2186 Transcriptional regulators - Prom 40299 - 40358 3.7 - Term 40462 - 40500 7.0 40 24 Tu 1 . - CDS 40623 - 41837 1416 ## COG0477 Permeases of the major facilitator superfamily - Prom 41954 - 42013 6.1 + Prom 41936 - 41995 4.9 41 25 Tu 1 . + CDS 42041 - 42604 490 ## COG4420 Predicted membrane protein - Term 42549 - 42597 2.1 42 26 Tu 1 . - CDS 42611 - 43555 1066 ## COG2066 Glutaminase - Prom 43622 - 43681 2.7 - Term 43640 - 43683 12.1 43 27 Tu 1 . - CDS 43686 - 44954 1278 ## COG0642 Signal transduction histidine kinase - Prom 44997 - 45056 4.1 44 28 Op 1 . - CDS 45140 - 46216 897 ## COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit 45 28 Op 2 . - CDS 46213 - 47406 992 ## LLO_0927 hypothetical protein 46 28 Op 3 . - CDS 47426 - 47986 379 ## PPSC2_c3809 protein 47 28 Op 4 . - CDS 48055 - 49314 847 ## PFL_6136 hypothetical protein 48 28 Op 5 2/0.071 - CDS 49311 - 50666 1087 ## COG1541 Coenzyme F390 synthetase 49 28 Op 6 3/0.036 - CDS 50663 - 51508 408 ## COG0491 Zn-dependent hydrolases, including glyoxylases 50 28 Op 7 . - CDS 51505 - 52500 925 ## COG0451 Nucleoside-diphosphate-sugar epimerases 51 28 Op 8 . - CDS 52424 - 53674 628 ## BT9727_3002 hypothetical protein 52 28 Op 9 . - CDS 53664 - 54662 1002 ## COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III - Prom 54792 - 54851 3.4 + Prom 54796 - 54855 4.2 53 29 Op 1 . + CDS 54974 - 55786 701 ## PPE_02200 hypothetical protein + Term 55789 - 55815 -0.3 54 29 Op 2 . + CDS 55846 - 57246 878 ## COG0836 Mannose-1-phosphate guanylyltransferase + Term 57247 - 57276 2.1 - Term 57322 - 57363 2.1 55 30 Tu 1 . - CDS 57567 - 58385 739 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) - Prom 58455 - 58514 7.1 + Prom 58424 - 58483 3.4 56 31 Tu 1 . + CDS 58518 - 59459 743 ## COG2378 Predicted transcriptional regulator + Term 59530 - 59591 18.5 - Term 59526 - 59570 7.8 57 32 Op 1 . - CDS 59601 - 59822 288 ## 58 32 Op 2 . - CDS 59840 - 61357 1264 ## COG1070 Sugar (pentulose and hexulose) kinases - Prom 61388 - 61447 5.4 - Term 61416 - 61450 0.0 59 33 Tu 1 . - CDS 61493 - 61849 335 ## PPSC2_c1444 LuxR family transcriptional regulator - Prom 61898 - 61957 5.6 + Prom 61849 - 61908 6.7 60 34 Tu 1 . + CDS 62088 - 63734 1748 ## COG2199 FOG: GGDEF domain + Term 63749 - 63797 10.2 - Term 63737 - 63784 6.2 61 35 Op 1 . - CDS 63795 - 64373 660 ## COG5632 N-acetylmuramoyl-L-alanine amidase 62 35 Op 2 . - CDS 64412 - 66031 1868 ## COG3858 Predicted glycosyl hydrolase - Prom 66075 - 66134 1.6 - Term 66108 - 66137 2.1 63 36 Tu 1 . - CDS 66156 - 67058 801 ## Glov_1411 hypothetical protein - Prom 67287 - 67346 4.0 + Prom 67150 - 67209 4.7 64 37 Tu 1 . + CDS 67260 - 67475 303 ## Pjdr2_0346 hypothetical protein + Term 67489 - 67526 8.7 - Term 67472 - 67520 10.6 65 38 Op 1 . - CDS 67522 - 67989 351 ## - Prom 68116 - 68175 4.8 66 38 Op 2 . - CDS 68254 - 68475 218 ## - Prom 68525 - 68584 4.2 + Prom 68523 - 68582 4.9 67 39 Tu 1 . + CDS 68612 - 69352 710 ## COG5522 Predicted integral membrane protein + Term 69445 - 69481 5.1 68 40 Tu 1 . - CDS 69539 - 70012 493 ## PPSC2_c5088 protein - Prom 70054 - 70113 3.8 - Term 70119 - 70156 2.2 69 41 Tu 1 . - CDS 70188 - 70700 372 ## COG1607 Acyl-CoA hydrolase - Prom 70775 - 70834 4.8 - Term 70915 - 70961 11.2 70 42 Op 1 . - CDS 70967 - 71653 580 ## COG0784 FOG: CheY-like receiver - Prom 71718 - 71777 1.5 - Term 71688 - 71734 2.3 71 42 Op 2 . - CDS 71780 - 72460 580 ## Pjdr2_1498 hypothetical protein - Prom 72589 - 72648 8.8 - Term 72622 - 72654 2.1 72 43 Op 1 38/0.000 - CDS 72682 - 73563 819 ## COG0395 ABC-type sugar transport system, permease component 73 43 Op 2 35/0.000 - CDS 73572 - 74420 1075 ## COG1175 ABC-type sugar transport systems, permease components 74 43 Op 3 . - CDS 74534 - 75829 1407 ## COG1653 ABC-type sugar transport system, periplasmic component - Prom 75873 - 75932 5.9 - Term 76032 - 76064 5.0 75 44 Tu 1 . - CDS 76098 - 76436 480 ## GYMC10_5600 hypothetical protein - Prom 76465 - 76524 2.6 76 45 Op 1 . - CDS 76546 - 76866 342 ## COG0526 Thiol-disulfide isomerase and thioredoxins 77 45 Op 2 . - CDS 76863 - 77234 456 ## COG0789 Predicted transcriptional regulators - Prom 77271 - 77330 7.8 - Term 77306 - 77337 4.1 78 46 Tu 1 . - CDS 77412 - 77741 336 ## COG0640 Predicted transcriptional regulators - Prom 77773 - 77832 5.7 - Term 77846 - 77879 4.5 79 47 Op 1 . - CDS 77890 - 78150 286 ## GYMC10_4002 hypothetical protein 80 47 Op 2 . - CDS 78242 - 79222 675 ## COG1262 Uncharacterized conserved protein - Prom 79414 - 79473 4.9 + Prom 79274 - 79333 2.6 81 48 Op 1 . + CDS 79414 - 80916 1420 ## BBR47_44250 spore germination protein 82 48 Op 2 . + CDS 80926 - 82041 827 ## BBR47_44240 spore germination protein 83 48 Op 3 . + CDS 82038 - 83171 1243 ## BBR47_44230 spore germination protein + Term 83178 - 83215 -0.9 - Term 83214 - 83253 7.8 84 49 Tu 1 . - CDS 83281 - 84645 1423 ## BT9727_0564 hypothetical protein - Prom 84698 - 84757 1.6 85 50 Op 1 40/0.000 - CDS 84760 - 85890 1004 ## COG0642 Signal transduction histidine kinase 86 50 Op 2 . - CDS 85887 - 86528 510 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 86757 - 86816 8.6 + Prom 86756 - 86815 10.8 87 51 Tu 1 . + CDS 86911 - 87231 204 ## + Term 87298 - 87335 0.2 - Term 87343 - 87375 3.0 88 52 Op 1 . - CDS 87392 - 88411 1102 ## GYMC10_1434 S-layer domain protein 89 52 Op 2 . - CDS 88434 - 89456 1161 ## BBR47_03410 hypothetical protein 90 52 Op 3 . - CDS 89487 - 90482 606 ## GYMC10_4430 hypothetical protein - Prom 90554 - 90613 3.2 91 53 Op 1 40/0.000 - CDS 90618 - 92030 1373 ## COG0642 Signal transduction histidine kinase 92 53 Op 2 . - CDS 92021 - 92716 640 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 92744 - 92803 5.6 - Term 92900 - 92939 2.8 93 54 Tu 1 . - CDS 92977 - 93150 206 ## + Prom 93383 - 93442 4.6 94 55 Tu 1 . + CDS 93481 - 94083 762 ## COG0778 Nitroreductase + Term 94193 - 94226 2.3 - Term 94117 - 94142 -0.5 95 56 Tu 1 . - CDS 94146 - 94277 57 ## 96 57 Tu 1 . - CDS 94330 - 94461 110 ## + Prom 94575 - 94634 3.1 97 58 Tu 1 . + CDS 94866 - 95036 144 ## gi|315647156|ref|ZP_07900269.1| transcriptional regulator, PadR-like family protein - Term 96322 - 96363 9.3 98 59 Op 1 . - CDS 96371 - 97159 749 ## COG0789 Predicted transcriptional regulators 99 59 Op 2 . - CDS 97205 - 100555 2988 ## COG0553 Superfamily II DNA/RNA helicases, SNF2 family - Prom 100616 - 100675 4.6 - Term 100638 - 100696 10.1 100 60 Tu 1 . - CDS 100870 - 103314 2910 ## COG2217 Cation transport ATPase - Prom 103387 - 103446 7.1 + Prom 103344 - 103403 3.3 101 61 Tu 1 . + CDS 103570 - 104829 1013 ## GYMC10_2456 hypothetical protein + Term 104863 - 104919 18.1 - Term 104851 - 104907 10.6 102 62 Tu 1 . - CDS 104922 - 105641 657 ## COG3910 Predicted ATPase - Term 105765 - 105819 9.0 103 63 Tu 1 . - CDS 105981 - 106364 293 ## COG3411 Ferredoxin - Prom 106426 - 106485 5.9 - Term 106466 - 106504 5.1 104 64 Op 1 . - CDS 106525 - 106782 319 ## 105 64 Op 2 . - CDS 106869 - 107255 314 ## gi|238064037|ref|ZP_04608746.1| MerR family transcriptional regulator 106 64 Op 3 . - CDS 107269 - 107586 176 ## + Prom 107876 - 107935 5.3 107 65 Tu 1 . + CDS 108053 - 108946 979 ## COG5504 Predicted Zn-dependent protease + Term 109043 - 109081 3.3 108 66 Tu 1 . - CDS 108988 - 110226 1252 ## COG0304 3-oxoacyl-(acyl-carrier-protein) synthase - Prom 110300 - 110359 5.7 + Prom 110262 - 110321 4.9 109 67 Tu 1 . + CDS 110349 - 111188 806 ## COG1396 Predicted transcriptional regulators + Term 111227 - 111257 -0.1 - Term 111449 - 111492 9.3 110 68 Op 1 . - CDS 111537 - 111776 282 ## 111 68 Op 2 . - CDS 111893 - 112414 431 ## COG0563 Adenylate kinase and related kinases - Prom 112561 - 112620 8.5 + Prom 112520 - 112579 6.8 112 69 Tu 1 . + CDS 112611 - 112949 329 ## Chy400_3397 hypothetical protein + Prom 112959 - 113018 1.8 113 70 Op 1 . + CDS 113088 - 114710 1303 ## PPE_02394 hypothetical protein 114 70 Op 2 . + CDS 114716 - 115903 989 ## PPE_02393 hypothetical protein 115 70 Op 3 . + CDS 115900 - 116112 228 ## 116 70 Op 4 . + CDS 116133 - 117242 1035 ## PPE_02391 hypothetical protein + Term 117260 - 117286 -0.7 - Term 117289 - 117326 2.5 117 71 Tu 1 . - CDS 117353 - 118636 1394 ## COG0860 N-acetylmuramoyl-L-alanine amidase - Term 118789 - 118824 5.1 118 72 Tu 1 . - CDS 118846 - 119442 616 ## COG3560 Predicted oxidoreductase related to nitroreductase - Prom 119478 - 119537 5.3 - Term 119548 - 119605 14.4 119 73 Tu 1 2/0.071 - CDS 119618 - 120874 1355 ## COG0477 Permeases of the major facilitator superfamily - Prom 120952 - 121011 4.0 - Term 121001 - 121049 14.8 120 74 Op 1 . - CDS 121080 - 122162 1176 ## COG2706 3-carboxymuconate cyclase - Prom 122265 - 122324 7.2 - Term 122270 - 122318 5.1 121 74 Op 2 . - CDS 122349 - 123209 1111 ## COG2323 Predicted membrane protein - Prom 123383 - 123442 4.2 + Prom 123317 - 123376 2.9 122 75 Tu 1 . + CDS 123416 - 123622 353 ## + Term 123637 - 123674 8.5 123 76 Tu 1 . + CDS 123790 - 124407 569 ## COG1624 Uncharacterized conserved protein + Term 124468 - 124503 -0.7 - Term 124421 - 124455 5.4 124 77 Op 1 . - CDS 124605 - 125018 569 ## COG2259 Predicted membrane protein 125 77 Op 2 . - CDS 125092 - 125859 727 ## COG3384 Uncharacterized conserved protein - Prom 125898 - 125957 9.7 + Prom 125907 - 125966 8.1 126 78 Op 1 1/0.071 + CDS 126008 - 126322 324 ## COG1733 Predicted transcriptional regulators + Prom 126346 - 126405 2.3 127 78 Op 2 . + CDS 126427 - 126849 541 ## COG1959 Predicted transcriptional regulator + Term 126924 - 126972 1.4 - Term 126705 - 126748 -0.8 128 79 Op 1 . - CDS 126942 - 127181 108 ## 129 79 Op 2 . - CDS 127258 - 127782 503 ## COG1846 Transcriptional regulators - Prom 127848 - 127907 8.0 + Prom 127752 - 127811 4.7 130 80 Op 1 10/0.000 + CDS 127957 - 129480 1751 ## COG0477 Permeases of the major facilitator superfamily + Term 129495 - 129538 8.6 + Prom 129509 - 129568 5.6 131 80 Op 2 . + CDS 129631 - 132255 2438 ## COG0642 Signal transduction histidine kinase + Term 132276 - 132343 18.7 132 81 Op 1 . - CDS 132342 - 133043 671 ## COG2120 Uncharacterized proteins, LmbE homologs 133 81 Op 2 . - CDS 133083 - 133358 367 ## COG4841 Uncharacterized protein conserved in bacteria - Prom 133457 - 133516 3.6 + Prom 133416 - 133475 1.9 134 82 Tu 1 . + CDS 133565 - 133738 341 ## + Term 133775 - 133813 7.3 - Term 133763 - 133801 6.4 135 83 Tu 1 . - CDS 133822 - 135051 1343 ## COG2309 Leucyl aminopeptidase (aminopeptidase T) - Prom 135198 - 135257 4.5 + Prom 135251 - 135310 4.5 136 84 Tu 1 . + CDS 135393 - 136847 1635 ## COG0659 Sulfate permease and related transporters (MFS superfamily) + Term 136852 - 136893 9.4 - Term 136839 - 136881 5.8 137 85 Tu 1 . - CDS 136936 - 137220 69 ## - Prom 137446 - 137505 3.2 + Prom 136859 - 136918 3.2 138 86 Op 1 . + CDS 137105 - 138094 1214 ## COG0492 Thioredoxin reductase 139 86 Op 2 . + CDS 138152 - 138874 839 ## Pjdr2_1014 hypothetical protein + Term 139053 - 139097 6.6 - Term 139146 - 139209 12.2 140 87 Tu 1 . - CDS 139292 - 141949 3008 ## COG4724 Endo-beta-N-acetylglucosaminidase D - Prom 142096 - 142155 4.4 - Term 142210 - 142249 8.9 141 88 Op 1 14/0.000 - CDS 142271 - 143764 791 ## PROTEIN SUPPORTED gi|15900035|ref|NP_344639.1| ABC transporter, substrate-binding protein - Prom 143784 - 143843 2.0 142 88 Op 2 7/0.036 - CDS 143863 - 144819 1008 ## COG0395 ABC-type sugar transport system, permease component 143 88 Op 3 2/0.071 - CDS 144859 - 145788 1074 ## COG4209 ABC-type polysaccharide transport system, permease component - Prom 145967 - 146026 7.4 - Term 145971 - 146022 11.3 144 89 Op 1 7/0.036 - CDS 146028 - 147584 1294 ## COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain 145 89 Op 2 . - CDS 147581 - 148969 1559 ## COG2972 Predicted signal transduction protein with a C-terminal ATPase domain 146 89 Op 3 . - CDS 148966 - 149334 386 ## GYMC10_6241 integral membrane sensor signal transduction histidine kinase - Prom 149445 - 149504 2.7 + Prom 149514 - 149573 4.7 147 90 Tu 1 . + CDS 149607 - 152756 3045 ## COG0383 Alpha-mannosidase + Term 152790 - 152828 7.3 - Term 152776 - 152816 8.0 148 91 Tu 1 . - CDS 152861 - 153640 674 ## COG0627 Predicted esterase + Prom 153664 - 153723 6.8 149 92 Op 1 32/0.000 + CDS 153970 - 154998 860 ## COG1135 ABC-type metal ion transport system, ATPase component 150 92 Op 2 22/0.000 + CDS 154985 - 155644 964 ## COG2011 ABC-type metal ion transport system, permease component 151 92 Op 3 . + CDS 155680 - 156531 1196 ## COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen + Term 156549 - 156601 15.5 - Term 156543 - 156583 8.6 152 93 Op 1 . - CDS 156608 - 157486 1156 ## Pjdr2_0342 xylose isomerase domain protein TIM barrel 153 93 Op 2 . - CDS 157516 - 158577 1090 ## COG0673 Predicted dehydrogenases and related proteins - Prom 158728 - 158787 4.0 - Term 158721 - 158773 7.3 154 94 Op 1 2/0.071 - CDS 158790 - 160349 1524 ## COG1070 Sugar (pentulose and hexulose) kinases 155 94 Op 2 . - CDS 160431 - 161792 1609 ## COG2610 H+/gluconate symporter and related permeases - Prom 161882 - 161941 2.8 156 95 Tu 1 . - CDS 161944 - 162618 565 ## COG1802 Transcriptional regulators - Prom 162717 - 162776 2.6 157 96 Tu 1 . - CDS 162803 - 163705 996 ## COG1023 Predicted 6-phosphogluconate dehydrogenase - Prom 163745 - 163804 7.7 158 97 Tu 1 . - CDS 163837 - 163968 161 ## - Prom 164042 - 164101 5.2 + Prom 164041 - 164100 5.6 159 98 Tu 1 . + CDS 164149 - 164448 303 ## gi|167463277|ref|ZP_02328366.1| hypothetical protein Plarl_12071 + Term 164481 - 164518 5.1 - Term 164469 - 164506 8.5 160 99 Op 1 . - CDS 164616 - 165185 434 ## PROTEIN SUPPORTED gi|157164512|ref|YP_001467500.1| 50S ribosomal protein L24 (BL23; 12 kDa DNA-binding protein; HPB12) 161 99 Op 2 . - CDS 165220 - 165438 207 ## Pjdr2_3506 TatD-related deoxyribonuclease 162 99 Op 3 . - CDS 165501 - 166127 432 ## COG0084 Mg-dependent DNase 163 99 Op 4 24/0.000 - CDS 166210 - 166977 263 ## PROTEIN SUPPORTED gi|225088774|ref|YP_002660041.1| ribosomal protein S16 164 99 Op 5 3/0.036 - CDS 166991 - 167752 794 ## COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component 165 99 Op 6 . - CDS 167749 - 168042 447 ## COG0011 Uncharacterized conserved protein 166 99 Op 7 . - CDS 168132 - 169169 1176 ## COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components - Prom 169362 - 169421 3.9 - Term 169196 - 169228 3.7 167 100 Tu 1 . - CDS 169425 - 170273 767 ## COG4667 Predicted esterase of the alpha-beta hydrolase superfamily - Prom 170317 - 170376 5.8 - Term 170314 - 170347 -0.2 168 101 Op 1 10/0.000 - CDS 170443 - 171330 737 ## COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components 169 101 Op 2 42/0.000 - CDS 171323 - 172273 1119 ## COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components 170 101 Op 3 25/0.000 - CDS 172301 - 173068 178 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 171 101 Op 4 . - CDS 173090 - 174013 912 ## COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin - Prom 174202 - 174261 4.7 - Term 174277 - 174311 -0.7 172 102 Tu 1 . - CDS 174367 - 174504 114 ## - Prom 174731 - 174790 2.0 + Prom 174481 - 174540 1.8 173 103 Tu 1 . + CDS 174738 - 175055 494 ## gi|167463268|ref|ZP_02328357.1| hypothetical protein Plarl_12026 + Term 175061 - 175087 -1.0 + Prom 175059 - 175118 7.0 174 104 Tu 1 . + CDS 175178 - 175807 650 ## COG0572 Uridine kinase + Term 175852 - 175896 7.2 - Term 175891 - 175924 -0.6 175 105 Op 1 . - CDS 176050 - 177246 1326 ## COG0477 Permeases of the major facilitator superfamily 176 105 Op 2 . - CDS 177334 - 177882 485 ## GYMC10_3899 hypothetical protein - Prom 178069 - 178128 4.3 + Prom 177987 - 178046 4.3 177 106 Tu 1 . + CDS 178146 - 179261 1329 ## COG2309 Leucyl aminopeptidase (aminopeptidase T) + Term 179320 - 179366 9.3 - Term 179636 - 179681 6.5 178 107 Op 1 . - CDS 179869 - 180357 500 ## COG0290 Translation initiation factor 3 (IF-3) - Prom 180445 - 180504 3.0 - Term 180464 - 180519 3.7 179 107 Op 2 . - CDS 180538 - 182253 1230 ## PPE_01722 ErfK/YbiS/YcfS/YnhG family protein - Prom 182298 - 182357 2.8 + Prom 182283 - 182342 6.0 180 108 Tu 1 . + CDS 182452 - 182583 143 ## + Term 182615 - 182670 6.1 - Term 182607 - 182653 5.1 181 109 Op 1 . - CDS 182668 - 183006 427 ## Bsph_2713 hypothetical protein 182 109 Op 2 . - CDS 183112 - 184188 1063 ## BpOF4_18695 hypothetical protein - Prom 184227 - 184286 4.8 + Prom 184279 - 184338 3.8 183 110 Tu 1 . + CDS 184383 - 184634 157 ## + Term 184771 - 184801 3.0 + Prom 184722 - 184781 2.6 184 111 Tu 1 . + CDS 184894 - 186297 1546 ## Pjdr2_3333 hypothetical protein 185 112 Op 1 . - CDS 186545 - 186925 355 ## COG0640 Predicted transcriptional regulators 186 112 Op 2 . - CDS 186980 - 187576 473 ## COG2249 Putative NADPH-quinone reductase (modulator of drug activity B) - Prom 187635 - 187694 4.4 - Term 187665 - 187699 2.9 187 113 Tu 1 . - CDS 187723 - 188202 320 ## - Prom 188322 - 188381 6.8 - Term 188342 - 188385 6.3 188 114 Op 1 . - CDS 188478 - 188993 176 ## 189 114 Op 2 . - CDS 189139 - 189651 152 ## COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog - Prom 189705 - 189764 5.0 - Term 190006 - 190043 6.2 190 115 Op 1 . - CDS 190119 - 190790 832 ## COG0692 Uracil DNA glycosylase 191 115 Op 2 . - CDS 190807 - 193215 2260 ## COG0550 Topoisomerase IA - Prom 193426 - 193485 7.3 + Prom 193426 - 193485 5.1 192 116 Tu 1 . + CDS 193513 - 194502 798 ## COG2971 Predicted N-acetylglucosamine kinase + Term 194582 - 194619 6.1 - Term 194617 - 194667 4.0 193 117 Op 1 . - CDS 194670 - 195197 464 ## COG0526 Thiol-disulfide isomerase and thioredoxins 194 117 Op 2 24/0.000 - CDS 195213 - 195953 293 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 195 117 Op 3 . - CDS 195946 - 196764 845 ## COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component 196 117 Op 4 . - CDS 196761 - 197330 667 ## GY4MC1_1558 lipoprotein 197 117 Op 5 . - CDS 197327 - 198691 1387 ## COG3420 Nitrous oxidase accessory protein 198 117 Op 6 . - CDS 198688 - 199071 411 ## gi|304406696|ref|ZP_07388351.1| hypothetical protein PaecuDRAFT_3027 - Prom 199120 - 199179 2.9 + Prom 199107 - 199166 4.9 199 118 Tu 1 . + CDS 199265 - 199612 570 ## GYMC10_3652 hypothetical protein - Term 199778 - 199815 9.2 200 119 Op 1 1/0.071 - CDS 199853 - 202288 2565 ## COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases 201 119 Op 2 . - CDS 202292 - 203293 1039 ## COG1609 Transcriptional regulators - Prom 203389 - 203448 4.4 - Term 203506 - 203543 4.0 202 120 Op 1 . - CDS 203601 - 204104 425 ## COG0622 Predicted phosphoesterase 203 120 Op 2 . - CDS 204138 - 204698 542 ## BSU31040 hypothetical protein - Prom 204768 - 204827 5.8 + Prom 204867 - 204926 2.8 204 121 Tu 1 . + CDS 204960 - 207152 2014 ## COG3973 Superfamily I DNA and RNA helicases + Term 207182 - 207228 7.4 - Term 207170 - 207216 7.4 205 122 Op 1 . - CDS 207303 - 208151 802 ## COG1307 Uncharacterized protein conserved in bacteria 206 122 Op 2 . - CDS 208167 - 209015 798 ## COG1307 Uncharacterized protein conserved in bacteria 207 122 Op 3 34/0.000 - CDS 209063 - 209785 617 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 208 122 Op 4 31/0.000 - CDS 209778 - 210467 894 ## COG0765 ABC-type amino acid transport system, permease component - Prom 210501 - 210560 7.0 - Term 210539 - 210578 6.8 209 122 Op 5 . - CDS 210615 - 211430 1046 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain - Prom 211489 - 211548 9.4 + Prom 211613 - 211672 4.5 210 123 Tu 1 . + CDS 211757 - 212392 817 ## COG1272 Predicted membrane protein, hemolysin III homolog + Term 212405 - 212439 4.0 211 124 Op 1 . - CDS 212432 - 213085 610 ## COG2755 Lysophospholipase L1 and related esterases 212 124 Op 2 . - CDS 213156 - 213467 443 ## Pjdr2_2658 hypothetical protein - Prom 213565 - 213624 1.7 + Prom 213572 - 213631 3.3 213 125 Tu 1 . + CDS 213692 - 214864 1346 ## COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase + Term 214896 - 214949 18.1 - Term 214883 - 214936 18.1 214 126 Op 1 17/0.000 - CDS 214999 - 215652 731 ## COG0765 ABC-type amino acid transport system, permease component 215 126 Op 2 31/0.000 - CDS 215703 - 216359 829 ## COG0765 ABC-type amino acid transport system, permease component - Term 216386 - 216434 14.0 216 127 Op 1 16/0.000 - CDS 216439 - 217302 1245 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 217 127 Op 2 1/0.071 - CDS 217363 - 218091 613 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 - Prom 218204 - 218263 4.2 - Term 218303 - 218327 -1.0 218 128 Tu 1 . - CDS 218396 - 219382 1226 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily - Prom 219548 - 219607 9.0 - Term 219501 - 219552 3.2 219 129 Tu 1 . - CDS 219645 - 219986 380 ## GYMC10_2657 general stress protein - Prom 220018 - 220077 8.7 - Term 220099 - 220139 7.4 220 130 Tu 1 . - CDS 220161 - 220574 572 ## COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism - Prom 220596 - 220655 6.0 - Term 220618 - 220648 3.4 221 131 Op 1 11/0.000 - CDS 220681 - 222369 1630 ## COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 222 131 Op 2 15/0.000 - CDS 222400 - 224181 2110 ## COG1960 Acyl-CoA dehydrogenases - Term 224314 - 224365 5.4 223 131 Op 3 20/0.000 - CDS 224401 - 225585 1378 ## COG0183 Acetyl-CoA acetyltransferase 224 131 Op 4 . - CDS 225613 - 228012 2655 ## COG1250 3-hydroxyacyl-CoA dehydrogenase 225 131 Op 5 . - CDS 228058 - 230226 2207 ## COG0247 Fe-S oxidoreductase - Prom 230469 - 230528 9.1 + Prom 230380 - 230439 5.1 226 132 Op 1 . + CDS 230545 - 231081 514 ## COG1309 Transcriptional regulator 227 132 Op 2 29/0.000 + CDS 231136 - 231897 907 ## COG2086 Electron transfer flavoprotein, beta subunit 228 132 Op 3 . + CDS 231973 - 232944 1252 ## COG2025 Electron transfer flavoprotein, alpha subunit + Term 232984 - 233032 2.1 - Term 232972 - 233020 17.2 229 133 Op 1 . - CDS 233270 - 234208 770 ## Aaci_0227 putative transmembrane anti-sigma factor 230 133 Op 2 . - CDS 234205 - 234783 563 ## COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog - Prom 234906 - 234965 4.4 - Term 234956 - 234993 2.1 231 134 Tu 1 . - CDS 235051 - 235554 272 ## - Prom 235800 - 235859 2.7 - Term 235847 - 235885 5.1 232 135 Tu 1 . - CDS 235901 - 236761 920 ## COG1737 Transcriptional regulators + Prom 237145 - 237204 10.5 233 136 Tu 1 . + CDS 237370 - 238941 1616 ## BBR47_39750 hypothetical protein + Term 238972 - 239029 16.0 - Term 238965 - 239011 15.1 234 137 Op 1 . - CDS 239072 - 240124 816 ## BCQ_0902 purple acid phosphatase/fibronectin domain protein 235 137 Op 2 . - CDS 240225 - 243227 2592 ## COG1649 Uncharacterized protein conserved in bacteria - Prom 243350 - 243409 9.2 - Term 243446 - 243485 3.1 236 138 Tu 1 . - CDS 243501 - 244283 967 ## PPSC2_c0556 membrane protein, permease - Prom 244311 - 244370 3.8 237 139 Tu 1 . - CDS 244415 - 245506 1039 ## COG0006 Xaa-Pro aminopeptidase - Prom 245554 - 245613 2.6 + Prom 245672 - 245731 6.0 238 140 Tu 1 . + CDS 245766 - 246329 740 ## COG0492 Thioredoxin reductase + Term 246358 - 246406 11.2 - Term 246343 - 246396 10.2 239 141 Tu 1 . - CDS 246479 - 247093 640 ## COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid) - Prom 247120 - 247179 3.6 - Term 247127 - 247181 15.6 240 142 Op 1 . - CDS 247198 - 247704 639 ## COG0693 Putative intracellular protease/amidase 241 142 Op 2 . - CDS 247736 - 248170 386 ## PPSC2_c4104 hypothetical protein - Prom 248201 - 248260 4.0 - Term 248270 - 248315 10.1 242 143 Tu 1 . - CDS 248325 - 249722 1185 ## COG1316 Transcriptional regulator - Prom 249817 - 249876 6.2 + Prom 249773 - 249832 8.3 243 144 Tu 1 . + CDS 249913 - 250347 501 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins Predicted protein(s) >gi|333607359|gb|AFDH01000034.1| GENE 1 1 - 865 792 288 aa, chain - ## HITS:1 COG:no KEGG:Bsph_3429 NR:ns ## KEGG: Bsph_3429 # Name: not_defined # Def: hypothetical protein # Organism: L.sphaericus # Pathway: not_defined # 7 278 7 278 278 252 45.0 1e-65 MYYGVKLNTNYKTLWQEGMKDWDGNLPVRMTDDVKEEGFWNAFMKKKEQAGVDSWVANLR KELIALIDPGEDVLEIGPGWGNYTFEAAEKAGSLTCVDSSESVLAYLKAAAERKGWNHLN FVHAKWEELPKVERADVVFGVNCYYRMQEIDRALLHINNTAKRLGIAGMVSGPERPHYKD IQEQLGCRIKFQRRDYIHLQNLLYELGIDANCKMVNLHKTYAYDTEEELLKDNLSAVLDK EYDRRKAIDLLYSYVREEDGRLIYPHNFKAALLYWKPEKRLEPADLPT >gi|333607359|gb|AFDH01000034.1| GENE 2 1481 - 1756 171 91 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MPAYWDLASYVGNLALFNGIQEPTFQYIWSQMNNQADKQAFGFAVTARILMSTLGNLDFA FSGSGDLEFAYKQLGLAKDFIHQINLIIEGE >gi|333607359|gb|AFDH01000034.1| GENE 3 2592 - 3080 378 162 aa, chain + ## HITS:1 COG:BS_cotF KEGG:ns NR:ns ## COG: BS_cotF COG5577 # Protein_GI_number: 16081105 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Spore coat protein # Organism: Bacillus subtilis # 8 162 5 160 160 142 48.0 2e-34 MSLPKVPKHLAWHETLELHELVSLQTGQLIAFKQKLPTLTDEGLQTLFREAIQTLEQNLN ELLAYYPKAPASSRNKNPEPPVLEAGQLLGFAKTAVRGYACALTETATPRLRATFVKHLL RAVEFHAKVFNRMYADGAYPAYDLKELLENDAVNARAALSLE >gi|333607359|gb|AFDH01000034.1| GENE 4 3166 - 3822 618 218 aa, chain - ## HITS:1 COG:BH3320 KEGG:ns NR:ns ## COG: BH3320 COG2120 # Protein_GI_number: 15615882 # Func_class: S Function unknown # Function: Uncharacterized proteins, LmbE homologs # Organism: Bacillus halodurans # 2 218 4 222 227 235 53.0 4e-62 MERHILVVLPHPDDEAFSVSGTLAGHIRQGTPVTYACLTLGEMGRNMGNPLAANRVTLPE IRKAELEESCRSIGIQDLRMLGFHDKTIEFEDRELLVGKIRGLIDELNPSLVITFYPGYS VHPDHDATGAAVIDTVQRIPVEERPVVHCIAFSKGCEDVLGKADIVSDVRPYLGQKLGSI LAHSSQFQLNGKLSGKSANDKEVQERFGHERLWTYRFQ >gi|333607359|gb|AFDH01000034.1| GENE 5 3849 - 4193 390 114 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_3722 NR:ns ## KEGG: GYMC10_3722 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 114 1 114 114 166 69.0 4e-40 MQFINQAAVQQVLDLLKGQDLYIHLEMTNGAYASHLDQSKHTASTFIRNSKIRYLQGSIA GNGPYRVGLKMEEGWVYSEGLTHWDETETQRLILSGHDKDGKLVVSLQLSRAPF >gi|333607359|gb|AFDH01000034.1| GENE 6 4137 - 4259 72 40 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MALKQIKNLLDGRLINKLHEDSSSNILTYSPKLLYAANLL >gi|333607359|gb|AFDH01000034.1| GENE 7 4383 - 7847 3006 1154 aa, chain - ## HITS:1 COG:alr2279_3 KEGG:ns NR:ns ## COG: alr2279_3 COG0642 # Protein_GI_number: 17229771 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Nostoc sp. PCC 7120 # 759 993 1 239 260 234 48.0 7e-61 MNIPSQAKETLFTHLYGQAANGLVFASPENGEWLGVNPALCKILGYSEAELLGRTEKSLL HPDDESFRSEHKHVMEKLAAFPGEVSDREKRYFHRDGRVISLNVRTTLARDPEAGQPLYL LHEITDITDQKAAAKELEDNRDLSLLFSQNIQDVISFSSPSGTILYISPSVEGLLGYKPE EMIGRKRVDFYHPDDALQMRNRDKLYSEKEVFIRRVRHKQGHYIWLETAFQLVRNSEGRV IKVLAIGRNVTERKKYEETLAAAQRIAHIGSWEWDLLNSRLSFSDEMRRIFGYAIHSVDS NAELFLRCIHPEDLPRVRGSIEKAFENGESGETFYKICLPDQSVRTIAGQWEVVTDEFNK PIQIIGMVQDITERRRMEERILESEQNYRLISEYSLDFISRHAVDDLATFLFVSPICRTM LGYEPEEMVGTAGLGYIHPDDVGYVKKYLQENLHGEGEEKVTFRFFRKDGTYVWFETTSR YTLDDQGREQEIVAISRDITERRNTELRLQEYKSLFDYNPVGVASLDLHGKLLTVNRGQQ VLTGYSEKELTDGYFASLVHEADYDKTFRHFELAAQGEPQTYETGLIHKDGHRIEANVMN VPIVLGGNIVGVYVLTSDITDRKKYTEEIEKLSYEHALILNSVSEGIFGLDLQGQGMFIN PAGASMLGFNPKELIGNRHLQTVEQACPDGNQYLPGDSPIERTVRDGISVSPSEGIFWRK DGTSFLASYQVTPLFDKGERKGVVVVFRDVTNEKEIIRAKEFAEQADRAKSEFLAIMSHE LRTPMNGIIGMTGLLQETMLDEEQRSYADIIRESSDALLHILNEILDFSRIEAGKMELNL GAVDLRETLAGVLELFRVKAEEKNLKLSYDIPAGVPRYVLGDEARVRQVLINLISNAIKF TEQGSVSVAVEMTNSPDPQSVLLEFKIRDTGIGIPAGKIHQLFQSFSQLHPAINRKYGGT GLGLSISKKLVELMGGEIGVESEENAGSTFFFTLHSSLGGTEAPDTAPAIPPAETAPVPS LPEAKPAPLRVLIADDHPMNRKLLHTLTGKLGYSADVVNSGAEAVHAAGERAYDLIFMDV QMPVMDGLEATRLIREQHGEKAISPVIIAVTAFAREEDKEQCLASGMNDYISKPILADEL KRLIAEWSARIKER >gi|333607359|gb|AFDH01000034.1| GENE 8 8116 - 9003 703 295 aa, chain - ## HITS:1 COG:no KEGG:BBR47_12300 NR:ns ## KEGG: BBR47_12300 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 1 269 1 268 294 191 38.0 3e-47 MKPAFYNGHDGSKSMFSGERVLIWTGLAGLVLAAFMAVYMTLYGSRVLPEGNVESAFSFN AALGVFILSIAAILPLAGMGSRPRKVFRWLLAFTAGAAYLLESVQHLRGINPRFTQAGSA VDHIAGITFGLDSMLLIVLIVWLAAAFFRKSVLAERPLVILGIRYGFLSTMAAVAAGIGM IVLQSRFTGSSGNLIVLHGLGFHAVQTLPLLGWLLEKSDDAQSRKVMLVHAGSLGWMLAV AGIGFQTASGMSVAELSPWTLTAAAGMLVWLLALGTALRKSVTVTWRVRPEAPKL >gi|333607359|gb|AFDH01000034.1| GENE 9 9099 - 9617 507 172 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_0349 NR:ns ## KEGG: Pjdr2_0349 # Name: not_defined # Def: transcriptional regulator, TetR family # Organism: Paenibacillus # Pathway: not_defined # 6 162 13 169 181 152 48.0 5e-36 MVVREDRKEQIINAAVGIFAELGYYKTTTAMVAKASGVTQPYVFHFFKSKEELFKAVIDR AVQRLYDVFIQVEASGDLILESMGQAFKDLMRANRAEMLMVLQAPAISEPEIRRHMSEKF ALIHTTIVRKFEESGVDEVETAAGNFMAIGLLIVTSDVLQLPEMLPFKDLNC >gi|333607359|gb|AFDH01000034.1| GENE 10 9749 - 10678 1178 309 aa, chain - ## HITS:1 COG:BS_yybQ KEGG:ns NR:ns ## COG: BS_yybQ COG1227 # Protein_GI_number: 16081107 # Func_class: C Energy production and conversion # Function: Inorganic pyrophosphatase/exopolyphosphatase # Organism: Bacillus subtilis # 1 309 1 309 309 412 71.0 1e-115 MEKTLIFGHKNPDTDTICSALAYADLKTQLGENVEAVRLGAVSGETQFALDTFKAEAPRL VETVAGEVKTVILVDHNERQQSVSDIDQVRVAEVIDHHRIANFETSGPLYYRAEPVGCTA TILNKLYKENGKSVPQNIAGLMVSAIISDTLLLKSPTCTEQDVAAARELAEIAGVNLESY GLDMLKAGADLSDKTIEQLISLDAKEFQMGSRKVEIAQVNAVDTNEVLARQDELEAALNA IIEKKGLDLFLFVVTDILNNDSVGLALGSSAKAVEEAYNVTLADNKAVLKGVVSRKSQIV PVLTDILSK >gi|333607359|gb|AFDH01000034.1| GENE 11 10806 - 11618 658 270 aa, chain - ## HITS:1 COG:MA3662 KEGG:ns NR:ns ## COG: MA3662 COG0500 # Protein_GI_number: 20092462 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Methanosarcina acetivorans str.C2A # 13 268 53 302 306 105 29.0 6e-23 MEPIVNYYSQFDEWGRLDREPWEYTINLSFIKKYLPAGSAVLDNGAGPGKYAMELARQGH GVTLADLTPKLVETARSKAGELGLLDRFRGFHAADARDLSLFGDGQFDASLMLGPLYHLQ AAEDRVKAVGELHRVTAKDGWVFVAFMPRIRHLANSLRDPLNWKPSDTVRGLEAFAETGR FDHSDDGRFTGAYYFPVGDIIPFMETNGFGTVKLIGSGSIASGMTEEQWDYWRSQGEEVS RRVMDLILQAAEDPYNLGSSSHLLYVGRRL >gi|333607359|gb|AFDH01000034.1| GENE 12 11772 - 12227 536 151 aa, chain + ## HITS:1 COG:BS_yvbK KEGG:ns NR:ns ## COG: BS_yvbK COG0454 # Protein_GI_number: 16080442 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Bacillus subtilis # 1 151 1 155 155 174 55.0 5e-44 MNITELRHGEPYPMDLLLLADPSEELVREYVQRGRCFTGAAADGTVIGVYVLLPTRPGTV ELVNVAVREDCHGRGYGKELVLHAVGQAREIGFKTIEIGTGSTGVAQLALYQKCGFRITG IDKDFFVRHYAEEIYENGMQVIDMVRMSQDL >gi|333607359|gb|AFDH01000034.1| GENE 13 12332 - 12610 270 92 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MAESENEIQLSEEEAAASETAAAGEVEAAREAQAEAESAADAAETETAEDVAPDADALED STEEVDGEVPEADGTGEAEEAVEDTASEDVTD >gi|333607359|gb|AFDH01000034.1| GENE 14 12851 - 13144 286 97 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_6114 NR:ns ## KEGG: GYMC10_6114 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 95 1 95 97 107 62.0 1e-22 MLTITAFSAELVKDPFGIISGKRYEFNLEVDVPEDDELYTANGIYLRVIYGVDEGQSRII KYDLHENSTDTYLEFDLEDEELAVVDTFCREHLPQNE >gi|333607359|gb|AFDH01000034.1| GENE 15 13232 - 13387 243 51 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKIMITQSEALEKGIWPEVMKMFGLNQEDDVWANEEFVLTEEQAKALGLIS >gi|333607359|gb|AFDH01000034.1| GENE 16 13766 - 15040 1137 424 aa, chain - ## HITS:1 COG:BH2205 KEGG:ns NR:ns ## COG: BH2205 COG0508 # Protein_GI_number: 15614768 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes # Organism: Bacillus halodurans # 1 423 1 410 411 479 63.0 1e-135 MADIKVPELGESITEATISKWLVTEGSTVSQGDLLVELETDKVNLEISAEQDGVLSEIRK QEGDNVSVGEIVGVIGASSGAQASAAPAAAPEAPKAAEAPAASPAAQAPAKAPAASAADS DSASLAASPAARKLARERGIDLSQVKSQDPIGRVYSDDVKSHGTQAAQPASAPAAAKSGG AGQAAQQAVPGKPVERKRMSRRRQTIANRLVEAQHTAAMLTTFNEVDMTAILDVRKRRKQ AFLDKHDVGLGFMSFFTKAVVGALKKFPHLNAEIDGDDIVVKQFYDIGIAVSAKEGLVVP VVREADRLSFADIEKQIGDLAGKARANTLALSDLQGGTFTITNGGVFGSLLSTPILNAPQ VGILGMHKIQIRPVAIDAERMENRPMMYIALSYDHRIVDGSEAVRFLVTVKELLEDPESL LLEG >gi|333607359|gb|AFDH01000034.1| GENE 17 15066 - 17915 2314 949 aa, chain - ## HITS:1 COG:BH2206 KEGG:ns NR:ns ## COG: BH2206 COG0567 # Protein_GI_number: 15614769 # Func_class: C Energy production and conversion # Function: 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes # Organism: Bacillus halodurans # 1 947 1 945 945 1109 56.0 0 MRNEVEGSRWPWESYYGPNLGYIQEKYEQYLNDPDSVEAAYRDLFARFGAPPASVQTVQS EGQANAGTTTTSDPNVLKKVVAVGKLVWNIRTYGHLAANLDPLGLSTNPDTRLLEPGTYG LTKEDLLAMPASIVWEEAPSDVANGWEAIQRLRQRYSQSIGFEFSHVHEEDERNWLNRQA ESGASIEPLTKEERTKLLDRLVQTEQFESFLHRTFVGQKRFSLQGTDVLIPLLDEIVHEV VHDGAEHILMGMAHRGRLNVLAHILGKPYKKIFAEFHHAPNKDIIPSEGSTGINYGWTGD VKYHLGARRSIKEGETREAKLTLANNPSHLEFVGAVVEGFARAAQDNRENPGYPEQDLNK AACIVMHGDAAFPGEGIVAETLNFTKLTGYENGGTIHIIVNNRVGFTTDSTDSRSTHYAS DLAKGYEIPIVHVNADDPEACLAAARLACEYRNRFKKDFLIDLIGYRRYGHNENDDPETT QPLMYGKVKNHSTISVLYAEKLKQEGLVDDNGYQQMIQNIQNTLQEAYELVKNHQGKGKR VAEPAIFDDLKKIKTAVPLQELQEINRELITWPEDFNVYPKLQRILERRGDALNEGGKVD WALAETLAFASILADGKPIRISGQDVGRGTFAHRHLVLHDVKNGSTYSPLHKLPQARASF AIYNSPLSEGSVLAFEYGYNVYSPETLVIWEAQYGDFANAAQVIIDQFISAGRSKWEQKS SLVMLLPHGYEGQGPEHSSARLERFLQLSAENNWTVANLSSAAQYFHILRRQAAITEREE ARPLVIMAPKSLIRNARVSSDGKEFSESSFLPVMEQKGLGDQPKKVKRLVLTTGKMAIDL EEALETSEDRDFSWLHIARVEQLYPLPEQDISEIIAKFPGLKEIVWVQEEPRNMGSWNFM ESRIRSLAPDKVNVRYEGLPDRSSPASGFQEIHTFEHNQIISLALKQPE >gi|333607359|gb|AFDH01000034.1| GENE 18 18223 - 19044 693 273 aa, chain - ## HITS:1 COG:CAC2804 KEGG:ns NR:ns ## COG: CAC2804 COG0491 # Protein_GI_number: 15896059 # Func_class: R General function prediction only # Function: Zn-dependent hydrolases, including glyoxylases # Organism: Clostridium acetobutylicum # 22 270 18 264 273 277 54.0 2e-74 MENTFEDKRLPVTSIKSGEGTEAAPDIYCLTLQIVNVVFVGEVSNPQGWVLVDAGMPRSA DEIIQAAEKRFGTVPPRAIVLTHGHFDHVGAIIELVKRWNAPVYAHELEFPYLNGMQDYP PADPDVDSGLVAKMSPVFPNDGIDLGSYLRKLPPDGSIPEMQDWRWIHTPGHTPGHISLF RDKDKALIAGDAFVNVKQESLYKVIMQTPEVNGPPKYFTTDWEAAKISVRFLEGLQPSLA VTGHGRPVSGPELAEGLRTLSEHFEERAMPEKK >gi|333607359|gb|AFDH01000034.1| GENE 19 19255 - 20733 1394 492 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_2817 NR:ns ## KEGG: Pjdr2_2817 # Name: not_defined # Def: GerA spore germination protein # Organism: Paenibacillus # Pathway: not_defined # 25 492 45 512 512 504 59.0 1e-141 MRFKKWIRLFSSTNPPSPVIRQIHADPPVLSRIKEQFKDCSDLTQREFPEPEITLFYFKH MVSPDLLEREILTPLENIQENETDQLLQNSIFLRVTEENILVEKIVSGWAALFVKGAAYA VDIYGPEVRVIEQSETEGVIVGPHDAFTESPEANLSLIRRRVKSNRLKVQAFTVGEVTNS KIFVLYIDGIANMDYVNTMTQRIQAIETDAIFDATMLVQLIDDFPNSLFPVMLNTERPDV AASKLVEGKVVTIVEQSPSVICGPTSFFEFFISPDDYYSRWAVGTATRLLRYTAFVITIS FTALYVSVTTYHYEMIPDNLITTLTESRSRVPFPPVFEALLMETTIELLREAGARLPTKI GQTIGIVGGIVIGQAAVQAGFTSNILIIAVASSAIASYVIPSYTMSASIRLIRFGLVIAA GVLGNFGIMAGIALVIIHLAKLTSLGAPYTIPVAPLKLKDWKDIFIRAPFWSLKSRPAQS LSMNKKYNKLKK >gi|333607359|gb|AFDH01000034.1| GENE 20 20743 - 21825 881 360 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_2932 NR:ns ## KEGG: GYMC10_2932 # Name: not_defined # Def: spore germination protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 3 355 2 354 362 233 39.0 8e-60 MSRERLYTHHVGFLVFNTQMGVVFFTLPRIAATYFGTNGWASMLIVCVIATFNIYLISLV NKLGKGESFFDILEKAISKWVLAPLYLFMTAVFSMIGCLVVKQYVLIYQLLIFPSTPDIV LKLVVDLLVLLLLLKGIYTISKANIIFCLLLLLLAPIFVAFTTEFDSVRLTTSLFKDGEN SVKGFITMYSASMGYEISLFFIPYASRSVKWMRGVYIGNFVVTFVYLMVTFICYGVFSYV QLKLQSFPLLDLLAYLKFPFMERIQNFLYSVFLISVIVTSSMYFWTSKETLSRLVPKIKG TYLSAAIMFVTFFISYMAQTLTVVEKWFGYLSVMIIGLAFFLPVFALVVLLFRKRSLPNV >gi|333607359|gb|AFDH01000034.1| GENE 21 21818 - 22915 812 365 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_2931 NR:ns ## KEGG: GYMC10_2931 # Name: not_defined # Def: germination protein, Ger(X)C family # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 17 363 19 368 369 285 42.0 3e-75 MFKMRHLFLPSLLFLTGCSSDQNILEKIGYIQSAAYDWAPDNKMKVTLSIPVIERESRDG YDEILTITASSSKAAKNLLSRKTSRTLVSGQLRNLLYGIELAKTGLRRNMDSILRDPSIS KRSNIILTEGEAHDIINRDYTGHPKTEQYVDKLLQKEFQLQNTPRILLHQFVRDYFDEGI DPIATVIRISGNDLEVSGIGLFKEDVYVTKLPTKDMIFFNLLYQNQKQGEFSFTLNDEDT KSIMFNAISSKRKIKIRRDEEGVLHADIQMVVHGSVLEYIGKLNLSTDDSAKVEKMMSAY ISEHSERVLSFMQKHGVDSIGLGRYVRNELGYAQWKKLDWAEAYPSVQVHVHADFHIKNF GNFFD >gi|333607359|gb|AFDH01000034.1| GENE 22 23074 - 23760 834 228 aa, chain + ## HITS:1 COG:CAC1083 KEGG:ns NR:ns ## COG: CAC1083 COG1988 # Protein_GI_number: 15894368 # Func_class: R General function prediction only # Function: Predicted membrane-bound metal-dependent hydrolases # Organism: Clostridium acetobutylicum # 14 221 1 180 212 63 28.0 4e-10 MFAFLSSSVNGGIMKGSTHLAIGTAIGLAASAFHPFTPTNFAVYISVAAFSALSADLDGP SMLSSKLGKISKWLREVFLWGGALLVAAVAYLFFTEHQFYPERMTIAVMIFLIGFVTKEG IIRNALVSLVGAGLIYWGWNTQMRWLIGLGAFVVWAPWLKHRGMTHTVWALAAWGAIGME LEKQLKLEGIMMVAVAGYFSHLFADTLTPSGVKWLYPFYKKSFKIPFL >gi|333607359|gb|AFDH01000034.1| GENE 23 23884 - 24492 460 202 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_0282 NR:ns ## KEGG: GYMC10_0282 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 2 183 38 217 264 65 28.0 2e-09 MGLFGFVYAVVGIALSIGLMPIFIGFPLLLFVLRTNRNLTDLDARLASRLLCLEPQTKAE TSGGTHRGERKSFWALLGAELVDARSFSALLWQFIRLPLGILAFAFAVSIASVVLALLVS PIVYWVLLQTLHIDIFQDQLNFFLMNERIDSMQLSLIHTGIGILAAPVGVIAIRKLAQFM GSIAVEMTRIGAPAYHSAPRFR >gi|333607359|gb|AFDH01000034.1| GENE 24 24532 - 24723 238 63 aa, chain - ## HITS:1 COG:no KEGG:BBR47_45910 NR:ns ## KEGG: BBR47_45910 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 9 56 7 54 59 77 75.0 2e-13 MEVNGENGIGWLTLALINAGLAQGKNRSGLNWFFISLLIGPLATLLIVVWDRIPKEPQRK RMY >gi|333607359|gb|AFDH01000034.1| GENE 25 24892 - 25089 218 65 aa, chain - ## HITS:1 COG:RSc0006 KEGG:ns NR:ns ## COG: RSc0006 COG4551 # Protein_GI_number: 17544725 # Func_class: R General function prediction only # Function: Predicted protein tyrosine phosphatase # Organism: Ralstonia solanacearum # 3 59 49 105 107 75 56.0 2e-14 MGWADVIFVMEKKHKRRIEDKFGSIVRHKRVICLEIPDEYGFMDEELIELLESRVSDYFP LTENE >gi|333607359|gb|AFDH01000034.1| GENE 26 25223 - 25771 261 182 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTTIQNITGLFLLVFGTFFTFSAGNLSAALICLVGGFMLMSISKLVDFQQGAYLRALGVP ITADQFHLIMKYSPEYAVESADFDVYPESRKEYALIRLEGELYLSVQVFKNVMTQVENEY KFRFPGREPISLHRTLSLYKGAELFDYGGLAFVSISALNLVSNICEGRLLLNFALRGREA DH >gi|333607359|gb|AFDH01000034.1| GENE 27 25785 - 26375 318 196 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_2913 NR:ns ## KEGG: GYMC10_2913 # Name: not_defined # Def: TmrB # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 196 1 196 198 272 65.0 7e-72 MIIWVNGAFGSGKSQTTYELHRRIPGSFLYDPENAGYFIRKNVPSSTALDDFQDYPMWRE SNYGMLNYISGKFDGVILVPMTLVNPVYFDEIVGRLRRDNRTVHHFALCASKETLLTRLR SRGEGANSWAARQIDRCREGLSQEVFKHHIDTDFLTIGEVSEEIAAIAGIQLLPDNRSTI RKQADRLLTQLKQIRF >gi|333607359|gb|AFDH01000034.1| GENE 28 26414 - 27196 550 260 aa, chain - ## HITS:1 COG:DR1085 KEGG:ns NR:ns ## COG: DR1085 COG0500 # Protein_GI_number: 15806105 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Deinococcus radiodurans # 12 135 15 138 251 66 37.0 6e-11 MTTDFGKVSGDYAKYRDALPDLLFRQLKARGTDFGGRKGLDLGAGTGIFTRALAERGAEV TGIEPSAELIEAAVAQTRQAGMEPIPYVQAAAEEFRLPGTYSFVTAVRAWHWFDRGRTLG NIRRHLMPGGSLIVINSVFESTSEAVRLTFRILKENGIVLKPAGSNAEVRERRSGFPVNW FEEWERHGFRLRHEWEQAYTLAYTHEDWCGKIRSVSWLANESNELRMKVSGELLRNLSDF DAAVLPIPHKYSVAVLTLES >gi|333607359|gb|AFDH01000034.1| GENE 29 27288 - 27710 359 140 aa, chain - ## HITS:1 COG:no KEGG:BMD_3599 NR:ns ## KEGG: BMD_3599 # Name: not_defined # Def: hypothetical protein # Organism: B.megaterium_DSM319 # Pathway: not_defined # 13 119 2 109 125 89 42.0 6e-17 MPNAEEEKELTGERPGFVSLWVGQFSEDEGLRQYTEFTYDEDGESVLPAFCADFGIDWFD EDFFEAYLALEETSSLAELLAGCSYDEKIIPEFEAQGLPEGTAWNTVVLLFNFGYPLKNR GKSAASGADRLVFVGMAEYE >gi|333607359|gb|AFDH01000034.1| GENE 30 27750 - 28373 686 207 aa, chain - ## HITS:1 COG:AGl779 KEGG:ns NR:ns ## COG: AGl779 COG3576 # Protein_GI_number: 15890505 # Func_class: R General function prediction only # Function: Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 36 165 39 168 215 161 56.0 7e-40 MDYFEDRIEAEAELREMLGYPNKIVEAMKITYMERHCREFIGLSPILFASTADLRGNCDV SPRGDAPGFVKVLDDHHLIIPERPGNRRMNTYRNILENPHIGLVFIIPGLEETLRINGKA CLTRDPGLLAPLEAHGKIPKLAIGVEVEEVFLHCAKAFKRSELWDMKTWPAALPSVPVMI AAHANRPDITADEVSIGLKDSYEKRMY >gi|333607359|gb|AFDH01000034.1| GENE 31 28521 - 29957 1328 478 aa, chain - ## HITS:1 COG:BS_ybfO KEGG:ns NR:ns ## COG: BS_ybfO COG2312 # Protein_GI_number: 16077300 # Func_class: R General function prediction only # Function: Erythromycin esterase homolog # Organism: Bacillus subtilis # 52 471 33 444 446 288 38.0 2e-77 MHSHHLKLKTIKTTIALTIAAVCAFPAAGMAAADTAADSKPPAVSTTQQYGRNWANWIQS HAYALDRIQPEASAKGVIEKDRFKDLEFLKPLLIDKKLVYLGENTHGAAEYSSSKVRLIQ YLHQELGYDVIAFESGLGNASAALAKSTDSTPEQMMKEAIFGVWWSKETLPLFDYIKQTL ETDKPLILGGFDMQIQSPYSEFVRDWIGSRDAKLAGAFADAEQELGDWSFSEDEAGYAKA KPRLLETYASMKTFVKENADKLKADYPRNPHLIEMTLRVLDNRIQVIQTYTEANIRSNLA LKKNDIVPFQETVRMRDEMMAANLTWLAEQIYPDKKIIVWGHNVHIRKKNSAVLNSAYSG LSLMGESMPARLKKQSYVIGLYAYQGEAANNMGQSYPIVKPERGSLEDILKQHGHPYTFV DIKYRKDKPGTSWMFEPRLSLDWGLMQESFIPRDQFDGLLLIDTVHAPSYIRGKGGSQ >gi|333607359|gb|AFDH01000034.1| GENE 32 30088 - 31524 1329 478 aa, chain - ## HITS:1 COG:no KEGG:Amet_0693 NR:ns ## KEGG: Amet_0693 # Name: not_defined # Def: hypothetical protein # Organism: A.metalliredigens # Pathway: not_defined # 41 453 25 452 461 144 23.0 1e-32 MSDDEPDDLQETGSLKKAEPAGISAGSDRGDEYASPAHEAVTFWKLLVFFVPLGIAASLV TMSHSIINSTLARAPDPEHVIAGYAIAMSLLGITEKPAVLLRQTCSALVRDRVSFRAMRR VAFYVFASIMAAGLILSYLPPGKWLMGAVFGIGGAQLENVLNVYRILMFVSLFSGLRCLY HGLIIYNKRTFWLTIGMVVRLFGMYLVAQYYIRVHGVTGSSVGAIIFLVGMVIESAVAVW EGSALLKHKIPEKNPEHTVEKTGDVFRFYKPLLFSSFIAVVIGPSLNALLGKAGDAVIAI AAFAVASNLTQLVQSFFSYIHQIVLNFYRIHPGRVKRFVLVISLIPSVLIGLLAYTDAGP WFLNEVIGVGDRLMEEVIKTLRVFMILTLVFPWLDYGNGILMLRRETRTMVYSQSANVTV MLVSLVLLIVITPGWNGAIGAFAQSVGTLAECIVVFVAVKRGRGEALISGSAPREKSV >gi|333607359|gb|AFDH01000034.1| GENE 33 31731 - 33851 1620 706 aa, chain - ## HITS:1 COG:DR0108 KEGG:ns NR:ns ## COG: DR0108 COG2409 # Protein_GI_number: 15805148 # Func_class: R General function prediction only # Function: Predicted drug exporters of the RND superfamily # Organism: Deinococcus radiodurans # 130 706 145 735 749 231 33.0 4e-60 MHRLAVLSFRYPKIILVCWAACLVFFGGYAHSLPSVLQGHGLDPEGSFGTVRERLDAGFN RPAEPVVLWFEQNAPGPKEEFRAYIRSVLRNAEGLPGLDRIVSPLDQEEMLRSGKAYALL DIRFTGRNEQEVLGELRGRLPAHPGFAWKLTGKPVVQADVNEASERDMRKAELIGLPAAF LILWIAFGGAATALIPVVLGMVSTVVSMGIVYWIGMVTDLSNFVLNVIPMVGLALSIDFS LMLVSRFREELSCGRAEPALRFTMRTSGRAVLYSAGCVALGLLGILFIPLPMFASVAWAA FTVLIVSVFLSFTLLPAVLSLLRTRIEAENAARFPVNGGRFWHRLSAAVMKRPLRLALLA ILIVFIFILPVGRMKMAVPDAASLPEGTESRAAAERLAVRFPSPEATLLLGVKEAGAHSG QRFDWQHAYRLYQRLQRDPQVVRVDSVFSRLGMNGEQLSLFLEKPGVRHEAALLPFYFHQ NQLVMDVYLRTDPDSEATREWLRKWEAAGNQEQIPFQLGGEAKYRQEVYDAIFTNLHKVL LFVLVTNFFLLYKAFGSVFIPLKTLLMNVLSITASFGLLTWIFQEGAADGGGSIAIMIPV FIFGLVFGISMDYGVFLVARIAEVYRQTLDNDYAVAAGLASTSRIITSAAAIMIAVTLPF AGADVAGVKQLGTGIAGAIFLDATLIRMILVPALMKLLGRWNWWSP >gi|333607359|gb|AFDH01000034.1| GENE 34 33890 - 35386 481 498 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_2747 NR:ns ## KEGG: GYMC10_2747 # Name: not_defined # Def: monooxygenase FAD-binding protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 292 496 176 379 383 177 44.0 2e-42 MNVTETDVAVLGAGLAGSLIAKSLAEKGWRTLLVDRHRFPRHKVCGEFLSPEVRQTLDAA GLLDRVSALRPARVERARLITAEGGHVDIPLPGTAMGLSRFRLDEALHEAAAAAGVRVLT SAAVLSVTRLADESCEVRVKREGRMELIRARTVIAAWGANGQAPVTGACCAGDSGGERFS GGPGSLRRPQGASILTSAKTEGQLNSFMPLNLLNPADRKNQAGSSSPANPTNPTNPACPT SPTNAACPANPANPANPANPANPANPGKQACSTHAWRTRGTLNPWKRSAPDYMGVKSHYA GIEMEPIVELYLFPGGYLGLCPIEDGLVNVSALLSRDAFRGAGKSVLALLEAAAQRCPPL HSKLKRGLPVPGAQAAVAPVKLNRRLNPWDMVPRLGDSSVMIPPLCGDGMSMALRSARLC APLADDYLRGKLSLAGWEEQYVRAVKRTFGRPLRWGRLLQSSLDSPAAVRLLLRLAQLSP GMASGLLEATRLKPEGEY >gi|333607359|gb|AFDH01000034.1| GENE 35 35383 - 36129 404 248 aa, chain - ## HITS:1 COG:DRA0327 KEGG:ns NR:ns ## COG: DRA0327 COG2227 # Protein_GI_number: 15807987 # Func_class: H Coenzyme transport and metabolism # Function: 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase # Organism: Deinococcus radiodurans # 2 214 6 215 236 70 29.0 3e-12 MPPFDRLRSRSPEAEYMDDLTCGGAELTEALRHLRRLNRLFAASGPTLYGIEKLWTAAGK PVELTVLDVGSGSGDVNRHVLRWADDRKIRVTVTLCDITEEACEEARRLFRSEPRVEIRR ASLFELPEGCADIVTGTQFLHHFSPDELPDVVRTMLRASRLGIAVNDIHRHWLAWSAVWL ASRVLSRNRYIRHDGPLSVAKGFSPEDWSVLGKALEMPGYHVSWRPLFRYAVVIPRQPQP DAGSERKP >gi|333607359|gb|AFDH01000034.1| GENE 36 36116 - 37264 880 382 aa, chain - ## HITS:1 COG:DRA0326 KEGG:ns NR:ns ## COG: DRA0326 COG3424 # Protein_GI_number: 15807986 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Predicted naringenin-chalcone synthase # Organism: Deinococcus radiodurans # 3 361 62 427 438 203 37.0 4e-52 MDQTTPATAILGIGTAVPAYPLKQSEVVLRLAQALERYPDSARWAKRLFKQCGVETRYTC EPGLLAPVSSCRYLPDTEPGLIPSTAERMAVYKRESVPLARQAAGQALADSGLSASDITH LITVSCTGQFLPGLDASLVKELGLSREVSRIPLQFIGCAAGLRAVCLAREIADSAPQANV LIVSVELCTLHIQPSGGKEALFGASFFGDGASACVIGRTGESRQGIFGLGNHRSVLIPEA AEEMTWEVGNFGFDLYLSPAIPKLITNRIPQEIGKLLDGERLPWLWAIHPGGKGIVDAVA QVYGLTEEQTAPSRQVLRDFGNLSSATILFVLQQMRTELRTAGADAADGIALAFGPGLTA ELIRFTYIPVGAAREKTADAAV >gi|333607359|gb|AFDH01000034.1| GENE 37 37624 - 38208 554 194 aa, chain - ## HITS:1 COG:BMEII0841 KEGG:ns NR:ns ## COG: BMEII0841 COG1434 # Protein_GI_number: 17989186 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Brucella melitensis # 38 190 8 151 180 74 31.0 1e-13 MTKKQIKLILAFGLFIVLMIAVKNAGSFLVYTEEPVKSDVILVLSGDRGERTEKGAELYK NGVAPYLMFSGGEVYRNSRMADLMKEHAMELGVPEQAIVLEDRADSTYENAVFSKKVIEK HAFKSVTVVSSDFHMRRVKLLFDRAFKDSGIQLHYVAAPDKNFTPRKWWGNNKSLMVTFT EYLKLTGYFLGKNS >gi|333607359|gb|AFDH01000034.1| GENE 38 38307 - 39575 1259 422 aa, chain - ## HITS:1 COG:CAC0161 KEGG:ns NR:ns ## COG: CAC0161 COG2807 # Protein_GI_number: 15893456 # Func_class: P Inorganic ion transport and metabolism # Function: Cyanate permease # Organism: Clostridium acetobutylicum # 21 415 14 427 432 337 49.0 4e-92 MNTREMTPPEELPLARQDQDTARTAGWLLIVGILFIGAVLRAPLTSVGPLIGTIKGELGI SNTLAGTLTTLPLLMFAVISPFAPKWARKYGIEAVLLAAAAILTVGILLRSALGAGTLFL GTALLGVAIALCNVLLPSLIKRDFPARIGLMTGVYSVSMNLSGAAASGISVPAASGLGWK GALGAWAALSLLALLFWLPLVNGSRKARQGAARVSAVSANSSGGKSVSVWKSPLAWKVTL FMGLQSTFFYAFVAWLPAVLNTRGLSAEYAGWMLSLMQLALLPITFVVPILAARMANQRF LVTLTCVLFLAGILGLLLGSTALVPLWIILAGIGGGCAFSLAMMFFSLRTRSAQQSAELS GMAQSFGYLLAAAGPILFGFLHDTTGGWTTPLLLLAAIAVLLFVVGQGAAANGFVGEERG AE >gi|333607359|gb|AFDH01000034.1| GENE 39 39572 - 40264 686 230 aa, chain - ## HITS:1 COG:lin0947 KEGG:ns NR:ns ## COG: lin0947 COG2186 # Protein_GI_number: 16800016 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 1 217 1 216 229 178 46.0 7e-45 MLEKPKKLTLVEQVADQLQTLIESGQWPVGTRIPPEPELSEALGVSRNTIREAVRAMVHA GLLQTKQGDGTYVCSSSVLGVVLQKRVRQSTLAETLEVRQALEREAARLAAERRTDEDID SLKLHLDACAAAEESRDMEAYSGADIRLHQAVVTAAHNELFSELYAHMTEALDHSVRSLS GLIPEIGLYRRSHAKMIDAIIRQDVEEAAEAVHEYISHSRNDLKRLEEQS >gi|333607359|gb|AFDH01000034.1| GENE 40 40623 - 41837 1416 404 aa, chain - ## HITS:1 COG:BS_yceI KEGG:ns NR:ns ## COG: BS_yceI COG0477 # Protein_GI_number: 16077364 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus subtilis # 8 402 5 399 400 403 60.0 1e-112 MRAIAMLQNPKQRKLLFSAGLSWLFDAMDVGIISFIVAALTVHWKLSAGQVGVLTSLNSV GMAFGAAIAGYLADRYGRKSVLLWTLLIFSAASGLSALAASFTVLCILRFIAGVGLGGEL PVASTLVSESMPAQDRGRAVVLLESFWAGGWILAALIAYFVIPKYGWQSAFVIGALPALY ALYLRRAIEDPPRFRKERSGETSFAAKVKSVWSRDYRRSTVMLWVLWFTVVFSYYGMFLW LPTVMVLKGFTLVKSFQYVLIMTLAQLPGYFTAAYFIEKFGRKFVLVTYLVLTAFSAVWF GGASTEGMLIAAGMCLSFFNLGAWGGLYAYTPELYPTAIRSTGAGLAASFGRIGGIIAPL LVGVLVGWGIGIQAIFILFFVMILIGALAVLFWGDETKGKELSS >gi|333607359|gb|AFDH01000034.1| GENE 41 42041 - 42604 490 187 aa, chain + ## HITS:1 COG:CC2964 KEGG:ns NR:ns ## COG: CC2964 COG4420 # Protein_GI_number: 16127194 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Caulobacter vibrioides # 61 174 70 188 205 63 34.0 2e-10 MRNKNEPERTSEEQLFKQLEKYPRQKLHKEDVERVTEMVRDYQGKIKAHLHEQQEKKTNR WDRMADHVAVLAGSWWFVTASAVTITVWMLVNSERNSLFILSFSLSILSLFQSTLIQKSQ NRQAAKDKQEQMLDIAINYKAEQENLEIQQNLKELEVKLQWIELRLSARSRAKRRPGRAK APRARQK >gi|333607359|gb|AFDH01000034.1| GENE 42 42611 - 43555 1066 314 aa, chain - ## HITS:1 COG:BH2627 KEGG:ns NR:ns ## COG: BH2627 COG2066 # Protein_GI_number: 15615190 # Func_class: E Amino acid transport and metabolism # Function: Glutaminase # Organism: Bacillus halodurans # 14 314 8 308 308 330 55.0 3e-90 MNADHEFNAIQAALPQWVEESRKLTSRGNVASYIPELAKSPASALGIHLLNGQGEHLSAG DCGLPFTMQSISKVFTLILALMDHGEETVFSKVGKEPTGDDFNSMLKLELVEPGIPFNPL INAGAIAVSSLIKGDGPEAKSARVLSFFRELAANDKLDYDEAVYRSENETGHMNRSLAYF LKENEVLDGSVEEVLQVYFRHCSIRVTCGDLSRMALVLAFDGQDPLTGKTLIPRRFVQIA KTFMTTCGMYNASGEFAISVGLPAKSGVSGGILTLVPGRYGIGVIGPALNRKGNSVAGVD LLEKLSGRFDWSLF >gi|333607359|gb|AFDH01000034.1| GENE 43 43686 - 44954 1278 422 aa, chain - ## HITS:1 COG:alr2279_3 KEGG:ns NR:ns ## COG: alr2279_3 COG0642 # Protein_GI_number: 17229771 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Nostoc sp. PCC 7120 # 175 416 5 252 260 129 33.0 1e-29 MTNRHQDPSGFYNNIEEAAAHIIEVVSGLLQVNTIFVATNDGRTNTILKAFNRREQLVKE GDELPFDISYCSLVGRRAGEPLVISDTASSPLTADLEVTRALGSRSFIGLPIILKNGQFY GTICILDHPSYPVSETDLKTLSAMAVFLAHVVELEHAVAELREAQQILRDSHAASEQSSR IKSKLLAMIGQEIKTPMTGIMGMTDLMQDTELSEEQKSYMNIIETSNNSLLTLVTDILDY SKMESGGVAVEAEPFELLPALEEAVNLYEIRNTGGRTIRLDAAPGLPSVVVGDPVKIRDV LVKLLDHASKNARSGELTLAAVNLPDTEHPDTHHIRFAVKAPLITPDKLEFLLEAADGKA GGSSVPVYETSLDLAISKKLVDLMEGQIWTESDRQKETDLIFSLMLSKYAEAAEAAEAQE FK >gi|333607359|gb|AFDH01000034.1| GENE 44 45140 - 46216 897 358 aa, chain - ## HITS:1 COG:sll1297 KEGG:ns NR:ns ## COG: sll1297 COG4638 # Protein_GI_number: 16329788 # Func_class: P Inorganic ion transport and metabolism; R General function prediction only # Function: Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit # Organism: Synechocystis # 21 340 3 314 338 122 29.0 1e-27 MNLTRNDVCQTDAEKEVLYAELKKHWLPLCPSRDLKRKPLGLTVLDVPLVLFRTEEGAHA LLDRCPHRNVPLSGGRLKAGKLVCPYHGWEFDGTGACTRVPGLCTFKPGPHHDASPVALR ERDGFLWARLGGGARSGEPQEVSVPEPLALPFMNNPEYYSFVWKTAVRGSLLNAAENLLD ATHTHYVHAGLIRTDSGRQTVNARIRAEGAAVEIEYTGESGQAGLISRLFERDRQRSFGR FYMPGVAQIEYSSAKGLTLLITAVMRPTSFAYQDIYAIITMKRGRFTNGLKKRVLTPFLK KALNQDIAIVETQQRTIERWGGESFHSTQADLIRPYLEQLMKGKVYDTPFEKKVQLFV >gi|333607359|gb|AFDH01000034.1| GENE 45 46213 - 47406 992 397 aa, chain - ## HITS:1 COG:no KEGG:LLO_0927 NR:ns ## KEGG: LLO_0927 # Name: not_defined # Def: hypothetical protein # Organism: L.longbeachae # Pathway: not_defined # 39 397 4 362 362 302 44.0 1e-80 MTQPAEFIERQAGQTPQSGAGAGDSPSNETGPGKNHPANAMTAAYTEPLIGKGADAYIRN VRTKVELVRAGEQLLPVTVNETEYDSSYVCSPYSTYVSYALEELVLFKSELLKGVLRGVI GILSPLLKSARINRNVHVNNWLLSTNLYEELPKEDVRVLTAGLLERFPSHAVIFRSLNEV TNLQLMKDLTGLGWILVPSRQVYFFEGREPDYLHKPNNVWDQKLLRRSPLRIVEHEEIEP SDYPRIVELYEDLYIRKYSRLNPRFTEAYIANCHRHGLLRIRGLRDSSGVLQGVIGCFDK AGVITAPLVGYNTALPQKEGLYRMLMSLVLTRAAEERKLLHLSSGAAHFKRIRGGRPAIE YSAVYIRHLPLRRRAVWLGLSHLLNGVGVPVMRKYRL >gi|333607359|gb|AFDH01000034.1| GENE 46 47426 - 47986 379 186 aa, chain - ## HITS:1 COG:no KEGG:PPSC2_c3809 NR:ns ## KEGG: PPSC2_c3809 # Name: not_defined # Def: protein # Organism: P.polymyxa_SC2 # Pathway: not_defined # 6 177 6 177 178 218 61.0 1e-55 MRDYFFDEVFAKEAGAAEEVLESFHQTWKLPLTEEEIREIAARQKNPFPVNSPFYNQYIP IDPTRWRMPQGKLPGAYAEFLRYSNGGEFRTGERYFQFFSTSEFREMNLAYELPEYMPLS VSFAMDGCGNHYLFDMRKAPVEGEYPILAAHSGNLGYDECVRVADSFEALCRGRSSLDEE LDSRYT >gi|333607359|gb|AFDH01000034.1| GENE 47 48055 - 49314 847 419 aa, chain - ## HITS:1 COG:no KEGG:PFL_6136 NR:ns ## KEGG: PFL_6136 # Name: not_defined # Def: hypothetical protein # Organism: P.fluorescens # Pathway: not_defined # 1 418 1 379 384 263 38.0 1e-68 MNVLLTGCRSYAALDLARRFRDSGWNVYAADSVKFPVCRGSRAIKEFFHVPSPREGCREF IAALAAIIRSAGIDLLLPTSEEIFYIAHGREELARYCRVFCDDFEVLNSLHNKWNFSGLT EGMSAQTPETKLLISAAQLKELGDPSAFAFKPVYSRFASEALLAPSRLPEGFAPSAHRPW IAQRYIRGRELCSYHLAVDGEIAAYGSYEPLYRLGQASGYYFKPVHREKIDRFAAELVRK LDFTGHVAFDYIEDKDGTLHVLECNPRATSGLHLADNAGLMKPFGRRGERLSEVTEGKLF ADGRTSLENPAAIRRGPGSLESPRSPENPECPEPAEAPPMIGYAMLANPFYHGFSPSGIG RWFHDFRHGRDVLFSRQDPWVPLLHAGSLAETVFDSLRRRIPFKDAATADIEWDGEALN >gi|333607359|gb|AFDH01000034.1| GENE 48 49311 - 50666 1087 451 aa, chain - ## HITS:1 COG:FN1849 KEGG:ns NR:ns ## COG: FN1849 COG1541 # Protein_GI_number: 19705154 # Func_class: H Coenzyme transport and metabolism # Function: Coenzyme F390 synthetase # Organism: Fusobacterium nucleatum # 19 433 19 420 424 350 42.0 4e-96 MKLILLLKQYALTKWNGQRWKSREDLEAWQNARVRAFLEETRRKSPFYARLFEGLPPDSW REWPTIDKTAMMDAFDELNTAGITKDEALHAALQAERERDFTPELNGVTVGLSSGTSGNR GLFIVSAEERAAWAGAALARALPGSLLRKHRIAFFLRADSNLYQTVQSRRIQFSFFDMIR PVPEHIERLGRLQPTLLIAPPSMLRLLAEAKQRGELAIAPNKIISVAEVLEPVDRQEIEL AFNTRLHQIYQCTEGFLGATCEHGTLHLNEDIAVIQREYVDSERRTFMPVITDFSRTSQP IIRYRLNDLLTLRDEPCPCGSVFTAVESVSGRADDLFFGRSMDGGQDVPVFPDFIRRAVM LASDGITEYKVIQRDRERLEVSVRTKEGVPDVTGPLRRELAGIFARHGCRPPEITFAPYS FQPGLTKLRRIERAYAVEPDMTAREGWIGSR >gi|333607359|gb|AFDH01000034.1| GENE 49 50663 - 51508 408 281 aa, chain - ## HITS:1 COG:YPO1980 KEGG:ns NR:ns ## COG: YPO1980 COG0491 # Protein_GI_number: 16122222 # Func_class: R General function prediction only # Function: Zn-dependent hydrolases, including glyoxylases # Organism: Yersinia pestis # 2 254 3 254 268 160 37.0 3e-39 MKLTMHCTGTCKQLEILSLRGGKWRSVAFPGLFAMLEHLSEGLILFDTGYSPRFAEATRR LPYALYRWTTPVETGGHLTAAEHVRAAGYAPEDVTAVIISHFHADHICGLADFPNAKFIC SKAGYDSVASLKGLAAVKRAVLPDLIPPDFETRANWVEQCQEAALPAACRPFERGWDLFG DGSVTAVDLSGHAAHQIGVFLRGTDGNPVLLGADASWSAQAVRENRLPSPPAFILFDGRR DYKRTFGNLVELHRRQPEMRLLFTHCAEAWELCGKEGIELL >gi|333607359|gb|AFDH01000034.1| GENE 50 51505 - 52500 925 331 aa, chain - ## HITS:1 COG:PA4361 KEGG:ns NR:ns ## COG: PA4361 COG0451 # Protein_GI_number: 15599557 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Pseudomonas aeruginosa # 1 327 1 327 329 227 39.0 2e-59 MKALVTGATGFLGGNLIRRLLEEGYEVTAVGRNPEAGRKLAQEGADFARMDLASEEMPEA VRGHEIVFHCGAMSSPWGVYRDFYTSNVTGTRQIIRGCMKHGVRRLVHVSTPSIYFDYRD RYGISEEEPLPMRGVNAYAQTKRLAESELDAARKAGLPVITIRPRGLFGPGDTAIFPRLL RANEEKFVPVFGGGRAFMDVTYVDNVTEALLCCARADKTCDGQKYNITNGEPVYVYELLA ELFRLLEMPFRARKVPYPAAYGAAAAMEAFAALPFARKEPMLTRYTVALLAFSQTLDISK AERELGYKPRVSVADGIRRFSLWWREQEGHA >gi|333607359|gb|AFDH01000034.1| GENE 51 52424 - 53674 628 416 aa, chain - ## HITS:1 COG:no KEGG:BT9727_3002 NR:ns ## KEGG: BT9727_3002 # Name: not_defined # Def: hypothetical protein # Organism: B.thuringiensis # Pathway: not_defined # 10 390 5 384 387 281 38.0 4e-74 MSTSKKSGSRRILITGGRAPAALELARQLSALGHTIYAADSLASPLLRFSRCIEKFIRIP GPRDNPSAFAEALQAIVLEQSIDLLIPTCEEIYYIAQIKNKLQGCTVLADDFGKLIALHD KASFIRRVKEMALPAPHTVLLETEEDMHALLEREGTRKWVLKPVFSRFANHIRLFSPGEV RPRINVSHENPWIAQHFVEGQEYCVYAIAHKGRLTAYADYAADFTAGRGATIYFKTCGRQ DLFGWVEHFVREIGFTGQIAFDFIVNEAGVIYPLECNPRATSGLHLFTPDEGIDRALTDC TDTVISPSPGGRPAMIAAAMLMYGAAACGTPAGLRHWITSLARGRDVIFSPGDWGPALAQ GRILLDLWREARAKRVPLKEITTYDIEWNGYYESVSDGGDRFSRRKSDPPPAGGRL >gi|333607359|gb|AFDH01000034.1| GENE 52 53664 - 54662 1002 332 aa, chain - ## HITS:1 COG:FN1850 KEGG:ns NR:ns ## COG: FN1850 COG0332 # Protein_GI_number: 19705155 # Func_class: I Lipid transport and metabolism # Function: 3-oxoacyl-[acyl-carrier-protein] synthase III # Organism: Fusobacterium nucleatum # 32 331 14 308 309 209 37.0 7e-54 MKTRQVKVLGTGAYLPEKRVTAEDLDRRLGKPEGWVYKKSGVKVRHYAENESVSQMGAKA AFAALADAGLEAEQLDCIVCTNAVPEQPIPCTAALIQSEMKLGDSGIPCLDVNSTCLSFL AGLDLISYLIDAGRYERVLLVAPEIASVGLNYSQSESAILFGDGAAAVVVGKTPAGESSG IVASRIETYGSGAALSEVRGGGSKLPSIAYEPDRIADFLFDMQGEALFKKTSKLLPDFLK KLFGEAGVTLEDVALVIPHQGSAMAMRLLQRKLRIPDDKLMNIIEHHGNMIAASLPMGLH EAVRLGRLKRGDLTAVIGISAGLSLGGLLLEY >gi|333607359|gb|AFDH01000034.1| GENE 53 54974 - 55786 701 270 aa, chain + ## HITS:1 COG:no KEGG:PPE_02200 NR:ns ## KEGG: PPE_02200 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 2 267 5 270 278 296 54.0 8e-79 MSEASGSGRTPIDVLIPAIDKDLETLPFVIDGLRRHVKHPIGSIYIVSPDSPRIKKLCKV KKCKFVHENSVLPLTKKDIRYRSKRWDRSGWLYQQLLKLNGDKICGNRYFLVTDADTVLI RPHRFLEKGKQVFFTRNWSHQEYFRIHAKLLGQKATSRPSYVNHYMLYDKVKLSRLKKAI SARHKMPWYRAILNNLNTTKQFGFSEFETYGNFVHARYPGTSLLKPARNKEFKKSIRFVP HSEREKWAGKFRSLSFHKRGGYYFKAKKAK >gi|333607359|gb|AFDH01000034.1| GENE 54 55846 - 57246 878 466 aa, chain + ## HITS:1 COG:aq_589_1 KEGG:ns NR:ns ## COG: aq_589_1 COG0836 # Protein_GI_number: 15606035 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Mannose-1-phosphate guanylyltransferase # Organism: Aquifex aeolicus # 1 315 1 320 320 132 28.0 2e-30 MKIILLSGGSGKRLWPLSNEIRSKTFLKLLPAPDGGRESMLQRVCRQLDAAGLLSSTSIV THFSQLEIVRSQVGEKIPVLAEPHKRGTFTAIGLASRYLHTQGISPDEIVCFMPADPFVD AAFFEKVASLPSVLAQSGARMALIGTKPSFPSTQYGYIVPVPAQNREAVPYLSVAEFAEK PDEQGASALLSRGALWNSGVFAFANSFMLEVLASRGLPDDYGQLLGLYDKLPELSFDEEV VEKTKPIVVLPYEGRWDDLGSWQALAPHLESRAVGPGEVSDDSANTHIVNELSSPVHVID VSGIIVAASPDGILVASKTGSSRIKQINPGKGRAPMYEEYRWGTVTTLGSTDNAATEVVI RRVTVLPGRSFPYRAHGSAKKSWTLLSGSGQMIMDGHLAVVKAGDVFYLKPGTGHALLAD SSGPVELIEIEFGPEGEKPASAAPSLSWEEALLLCGDGREPDPGKG >gi|333607359|gb|AFDH01000034.1| GENE 55 57567 - 58385 739 272 aa, chain - ## HITS:1 COG:RC0617 KEGG:ns NR:ns ## COG: RC0617 COG0596 # Protein_GI_number: 15892540 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Rickettsia conorii # 20 237 23 257 290 83 26.0 4e-16 MEQSKDHSSAKRSYFRSGANELSYVDYGGADKPVLLLLHGHMNDAGTFTDLASRLQKDWR VIGLDQRGHGWSGHPADTDYSRESYVTDILNLVRQELGGQPVVILGHSLGGINAYQFAAR HPEYVRAVIVEDIGAEIDADLSFAEKLPERSPTLQDLRDSLARLGLKAIDYFSESVFEDE KGWGFRTDLKGMKSSQENSNGQWWEDWMSSTCPILLIHGKKSFVMNAEQAKWMQSRRPNT FLEMFEDCGHGVHSDDPDGYYAVVKKFLDGLG >gi|333607359|gb|AFDH01000034.1| GENE 56 58518 - 59459 743 313 aa, chain + ## HITS:1 COG:BH1889 KEGG:ns NR:ns ## COG: BH1889 COG2378 # Protein_GI_number: 15614452 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Bacillus halodurans # 1 313 1 314 325 395 60.0 1e-110 MSKSKRLMELMMTVNRKRKFTVGELAREFGVSQRTILRDLQELGELGVPLYSEVGPHGGY QVLRERLLPPIAFTEEEAVSIFFAVHALRHYSSLPFETESSSALKKFYAYMPEDVRERID QMKNRVDFITPARKAVSPYLSTLLDAAVQQKVLLIRYQSREKSSDREIQPIGIFTRNGLW YCSAYCYRSEGMRVFRCDRIHSAIPSAAEALDLRHIHLENKASAGRKERNEVRVFAELTL EGVEACEAEPWPEPKLAMREDGTGWLQGTISREDLPYFARFFIGLGGEATVKDSPELLAE IKAMLAELLGKYS >gi|333607359|gb|AFDH01000034.1| GENE 57 59601 - 59822 288 73 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MEHYQTLIGVVLEKLSQSHQELKFNLDGLNSVLANHTAEEIAAAPELLTIRELRDVYADI VAAAEKRFPGLKG >gi|333607359|gb|AFDH01000034.1| GENE 58 59840 - 61357 1264 505 aa, chain - ## HITS:1 COG:TM0116 KEGG:ns NR:ns ## COG: TM0116 COG1070 # Protein_GI_number: 15642891 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar (pentulose and hexulose) kinases # Organism: Thermotoga maritima # 1 499 1 491 492 241 32.0 3e-63 MTYIASFDIGTTHVKGILVNRDGELFHEQNVSLTCRQEPPFIEQEPEQWFKAVGTIVSEW FRDGIGAGQIGLVALSGQMQDCIPVNGQGHAVRPAILYSDSRAGAEARMIRDEIGEEEIF RSAANRMDGTLTFPKLLWLKTHEADNCARTSRYLISSKDYVIARLTGVFVTDPTSAATTG CMDIRRREWREDWLARMGLPAGKLPDILPSGETAGRVHAEGSRLTGLAEGTPVLCGIGDA GAATLGAGVYEPGEVYAYIGTTGWIAGVSGGVADPAAGLFNLAYAEPGRYINVAPLTNAG NAHQWAAEVFGPEAAGTDGRGIYEAAERLVEASDRGRNKILFLPYLNGERCPVQDEGASG CFIGLRPSTTKADMAAAVLEGVAFAMKQVMELRGAPEGAASLTLIGGGARSRQWCRILAD VFGTEVSVASESQFLPCLGAAALGFPGLGWESSYDRLCEKIKNRRKCETFSPDVEKKAHY ESKYARYLELYPALAPVFRQAATEA >gi|333607359|gb|AFDH01000034.1| GENE 59 61493 - 61849 335 118 aa, chain - ## HITS:1 COG:no KEGG:PPSC2_c1444 NR:ns ## KEGG: PPSC2_c1444 # Name: not_defined # Def: LuxR family transcriptional regulator # Organism: P.polymyxa_SC2 # Pathway: not_defined # 1 112 1 112 113 139 60.0 3e-32 MDRRAELIRQFKEMETEAGVYQIRNTTNDKIFVESSPNFKNINGRTFELNIGSHLNKELQ KDWTELGEEKFVFEILEIVEKKKNGYFDLKDALKKMERKWLDRLQPYGDNGYNKPPRA >gi|333607359|gb|AFDH01000034.1| GENE 60 62088 - 63734 1748 548 aa, chain + ## HITS:1 COG:RSp0380_2 KEGG:ns NR:ns ## COG: RSp0380_2 COG2199 # Protein_GI_number: 17548601 # Func_class: T Signal transduction mechanisms # Function: FOG: GGDEF domain # Organism: Ralstonia solanacearum # 370 543 4 175 181 133 43.0 7e-31 MSLSLRTTFALVSALVICLLTVVLSTVIGKKTTHQVEESIGVSLSQVAYQMADKLDHFMW SRAGEIDVLSELLSDREASGDAKELRNLLEQLKKSFPSYTWVAFIDPEGKVTASTDGILT GTNIASRPVFTEGKKGRFIGDVHEAVLLAKLLPNPSGEPLQFVDISTPVYNKQGQLTGVL AAHLSWEWSREVEATLLQPLKDKMKQLEVLIVSKKENTVLLGPKETLYRPLDTVSIRQAQ AGGNGWLTETYPGGRTYLSGYAYGDGYLDYPGLGWSVLVREPADVAFTSVSELKTYITAA GIILSLVFAALAAFLAGWVVRPLQKITRSADRLRKGEPAAFPAFTFIREIRILSDSLRNL VDNLTKTENALDQMSDLALHDKLTGLPNRIALDAYLEQAMRQAKENGTTLTFLYLDLDGF KKVNDSLGHLFGDKLLQQTALRLTQGMSTDSILTRVGGDEFVIVLPTGASAPDPAAIRLA GSILERMNEPFLVDDQALRIGCSIGAAVWPLHHEDPIETMRLADQALYMSKRSGKNCMTF SPDSRENA >gi|333607359|gb|AFDH01000034.1| GENE 61 63795 - 64373 660 192 aa, chain - ## HITS:1 COG:lin0128 KEGG:ns NR:ns ## COG: lin0128 COG5632 # Protein_GI_number: 16799205 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: N-acetylmuramoyl-L-alanine amidase # Organism: Listeria innocua # 58 190 28 154 289 108 41.0 5e-24 MSAKKRLFRAAFAVLAAVLSAIMLIQLVMTKTGEKNLEKLGLDSARLLTGLDPGVVRKMD ELLAKTAAIGIQVVITDDFRSMEEQDKLYSQGRTSEGKIVTHAKAGESYHNYGLAIDFAL KTKSGKIIWDMNADLNGDGRKDWSQVVAIAKELGFEWGGDWTNFPDYPHLQLSYGLSIAE LQRGTKTARSGP >gi|333607359|gb|AFDH01000034.1| GENE 62 64412 - 66031 1868 539 aa, chain - ## HITS:1 COG:BS_ydhD KEGG:ns NR:ns ## COG: BS_ydhD COG3858 # Protein_GI_number: 16077638 # Func_class: R General function prediction only # Function: Predicted glycosyl hydrolase # Organism: Bacillus subtilis # 309 524 178 400 439 84 30.0 5e-16 MKNKKWMAAAVLGCMLTGSATANAYESRLKPFGDVPESAWSAEHIYTLAAVQALDGYQDG GFHPLAAMSREEFIKLLVTAAKTGYDADHPVTLTDVGRERWSYPMIGAALQRGWIKAMVD SGGAFHPAAPIRREEVAYAMGSLLLDKLSEAERASWLESGWKREQSSRAFADAAGVDEAL KPYVYYAVNRGMLEGSENGLEPDKQLSRQEAAAVINRLLHKEAGNKPLEVTGFYAVQSYN SLGKMPLLDRVALGWWHLNYEGAGSAKLGSAGDPFKFNRPDGWEEVTAAASSSHVSKDLM IFANKSHGVEEFLGDAAARKAFTAAIAETLSDPKYGFTGVSIDFEDLYGADKKAEFAAFL SEVKEAAKGKTLTVAVPPTYYFEGYDLPSIGKTADTVILMAYGFLYKPDRLPSAPLPLVA EAVRDTIKAGVPVEKLVLGISKKTDQFIDQGGTTTYASPASSAVEERLKKPGVQSTLSVP YLLGHIRYTDGGAHELFYEDSDSLDRKIWLARYYGLKGVSLWYMGQFTDSDWQRIDAVK >gi|333607359|gb|AFDH01000034.1| GENE 63 66156 - 67058 801 300 aa, chain - ## HITS:1 COG:no KEGG:Glov_1411 NR:ns ## KEGG: Glov_1411 # Name: not_defined # Def: hypothetical protein # Organism: G.lovleyi # Pathway: not_defined # 58 299 55 301 305 72 27.0 3e-11 MEKKRCLFCDQIVPIGREDGYDLYTGCYCSPDGSYGLHRDSYDPYSVLSYQTKHLMFPVI SAYIRELTDCGETVRLTIDDLEGIRNSPRVPVTIEDKGIRLLQFFHRHSEGPDEAVVLQQ LPKSYNLTYSPNLQELIYIIEKLKEERLLERMGSSFKLTAQGWKTAEESLGGKRLKPCFV LLPEDGETRLQWTEKVLPVIEQCGYEPRTSERTAREKEADYSLRMIADSKLLIADLGAQG PEVFLAGGYALGRNIPVIWTSRRIGDETTASPSEKIRPFVWETAEELASILKQRLTSEVF >gi|333607359|gb|AFDH01000034.1| GENE 64 67260 - 67475 303 71 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_0346 NR:ns ## KEGG: Pjdr2_0346 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 1 71 1 71 71 82 57.0 4e-15 MSQNRRLTTDQDFKEAMDRQSPVRVFKNDHIIDTGAVITRFDDSMVVVQTRVSELTYHDR LGCEFFEMRKR >gi|333607359|gb|AFDH01000034.1| GENE 65 67522 - 67989 351 155 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MERREEPVILFQASLSLVVSAANKSQAAETAAFILSRESIDLSPVQMVNEQGEKAEFRME SVDAVEWTRVEDIREGGRFKVYGTIRLKLRAGSPEDYASVIQAGLTGYHLPRSVIHDHTV WVIPTNCGPAFACVLDEKASWKPAVQEPAMLVAVG >gi|333607359|gb|AFDH01000034.1| GENE 66 68254 - 68475 218 73 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MMSKNEEARKADFSNETPEITPKTPPEIKPNDVPEVAPRTVPETPPAAPPEIKPTVPPEI SPQRNPEFPDQNR >gi|333607359|gb|AFDH01000034.1| GENE 67 68612 - 69352 710 246 aa, chain + ## HITS:1 COG:BS_ywaF KEGG:ns NR:ns ## COG: BS_ywaF COG5522 # Protein_GI_number: 16080895 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Bacillus subtilis # 13 227 14 229 237 125 34.0 9e-29 MERFFGANEAEGFTAFSGAHWAALTVFAALVLALYGSRNWFTQGNRALRGRIAIAVILVL CETGLNVWYAAEGIYDVRYTLPLELCSISLYLSVFMLLFKSRLLFQVVYFTGIGGALMAL ATPVLWYDFPHFRFFEFFAAHIAIILGVLYLIWVEGFRPTFKSVFLAMGYLNVLLLGVGT VNLLTGGNYMFLARKPETASLIDYLGPYPWYLLSLEAAAFAIFLLMYVPFSLGSARPKDP RLPHVR >gi|333607359|gb|AFDH01000034.1| GENE 68 69539 - 70012 493 157 aa, chain - ## HITS:1 COG:no KEGG:PPSC2_c5088 NR:ns ## KEGG: PPSC2_c5088 # Name: not_defined # Def: protein # Organism: P.polymyxa_SC2 # Pathway: not_defined # 1 147 1 147 152 123 47.0 2e-27 MENRLIEDRVARLLHESNSQVQVTLESHFPGGRMAGGKYNMGRHLITLYIEEIKAQCMQL YGSHDLLEAYVDIVLAHEIGHAEDADLDRLASLMDASDSELERSRIALRIEENAWAYARA LLPETSGPMLDEIVRESLQAYHEAIDELELELQPIGA >gi|333607359|gb|AFDH01000034.1| GENE 69 70188 - 70700 372 170 aa, chain - ## HITS:1 COG:lin2060 KEGG:ns NR:ns ## COG: lin2060 COG1607 # Protein_GI_number: 16801126 # Func_class: I Lipid transport and metabolism # Function: Acyl-CoA hydrolase # Organism: Listeria innocua # 2 169 5 172 172 191 58.0 5e-49 MESKFVKETRCMKVARVFPPDVNNHNTMFGGKLMSYIDDIASISASKLCRVTAVTASTDS VDFLYPIRPSDSVSLESFVTWTGRTSMEVFVKVITEDLVTGVRKIAATAFLTFVGLDDDN KAVPVPRVIPETEEENKLYETAEHRAEIRKVRREASKTFADFLLTKYPWE >gi|333607359|gb|AFDH01000034.1| GENE 70 70967 - 71653 580 228 aa, chain - ## HITS:1 COG:sll1905_5 KEGG:ns NR:ns ## COG: sll1905_5 COG0784 # Protein_GI_number: 16330477 # Func_class: T Signal transduction mechanisms # Function: FOG: CheY-like receiver # Organism: Synechocystis # 101 216 1 116 122 115 45.0 7e-26 MIHVHGIRKQMPYNQAEGGCPSGGADGSSSGPRPEKPTPRGYTYTSERKIRLPEKIAVSK ELDLTGAYLLFRFSDSPGPAYPALSLLPSAPSKRYSGDGEDLSILIAEDNPMNRKLLQTI LRKRGFEPDIAEDGAEAVEAFARKAYDLIFMDIAMPNMDGLEAARRIREAAPGDTSPVIV AVTAYARKEDRVKCLASGMQDYVSKPFRIAEIEDVLTKWIGYIKGYKK >gi|333607359|gb|AFDH01000034.1| GENE 71 71780 - 72460 580 226 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_1498 NR:ns ## KEGG: Pjdr2_1498 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 1 223 1 226 233 186 39.0 5e-46 MEKKTALSQLSSQTGKMLRERFGKGPESIFISYNEYGITLHFRNFVSAVEMILLDKQKGE AVRETRQMVMDVLLPDLKEFITQTVGIAIEEIYYDWDLEDHSGIMIGLTNKSLDADIQEK YAGYEKVHQQVSDVTAHVQKIPDRIYSFWTNPRTLIIVREGLLIMLEKELINTGYENALR VAKTSLEKKLLLHDVDMEQAIGRTVTGLYLDWDFERDRSVLVYTFK >gi|333607359|gb|AFDH01000034.1| GENE 72 72682 - 73563 819 293 aa, chain - ## HITS:1 COG:all4824 KEGG:ns NR:ns ## COG: all4824 COG0395 # Protein_GI_number: 17232316 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Nostoc sp. PCC 7120 # 18 293 4 279 279 242 46.0 8e-64 MRLKPAAVTYAPGRRTRRKRRSGVRRLISYVCLTLIAVVMILPFLWTLSTSLKGQNETIY SMPPRFIPELFTLENYATVWNSLPLPLYVWNSTVLAFFGVLLPVVFCSMAAFPLARMTFR GKGAVFLIIIATMMIPGEVTMIPVYLILNKLHLLGSYTGVILPAAVSAFGIFLMRQGFLG IPKEIEESAVIDGAGVIRIFLLIMMPMVRPMLATLAILSFIGSWNNFLWPYLVIEDDRLY PLTLGLYKLKGTFVTNTRLIAAGSVIALLPILAVFISFQSYFIKGVQSGAVKG >gi|333607359|gb|AFDH01000034.1| GENE 73 73572 - 74420 1075 282 aa, chain - ## HITS:1 COG:slr1202 KEGG:ns NR:ns ## COG: slr1202 COG1175 # Protein_GI_number: 16329975 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Synechocystis # 8 275 17 287 298 221 46.0 1e-57 MYKTIHAWAFLAPAGILLLLFSIFPSAAALYLSFTSYNVFEPMEWVGLANYQTLMRDSEF WRAMFNTFYYWILVTPALVILPVFLAILVNQGLTGVKVFRLIYYFPALVSVVVTAFLWGW MFQSEGIFNYMLSLFGAEPVKWLTSKYFVMPSLAIVTVWQGLGYYMLFYLAGLQAVPEDL YEAAELDGAGFWSKHVRITFPMLKPVIFFVSVVSTMGAFKEFTLMLTMTEGGPIGASTTV VYRVFDEAFKQLDMGYASAISFVLFIVILLLTLVNKRSMEGE >gi|333607359|gb|AFDH01000034.1| GENE 74 74534 - 75829 1407 431 aa, chain - ## HITS:1 COG:all1027 KEGG:ns NR:ns ## COG: all1027 COG1653 # Protein_GI_number: 17228522 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Nostoc sp. PCC 7120 # 41 427 36 430 432 234 35.0 3e-61 MKRSIRWLPLVVAVLLLFTAACSKSGTDPGTSASPGASAEQSSKGDKKEITFWTIALSPT FDDYLNGVIQDFESKNPGVTVKWQDIPFEAIEQKTLTSAASGSLADVLNLNTDYLKKLAA LGAVANMDELAADVKKDYFEGVWSAGEFQGVSYALPWYLSNSVQLYNKELLKKAGFDAPP KTEEESWEMSKAIKEKTGAYGNTLKDIHLYLPQNGIKLVSDDYKKAAFNNEKSLEIFKKF KERYKEGLIPDEILLNQAKPQEWYAQEKIAFWGTGPQLFRQVKDLSPQVYAKSDSAGALV GSSGKVNVAIMNIAVSAKSKHKKEAADFAKFLTNGENQLKFAQIVAILPSVKKAAEDPFF TKGKDSADPAEKGLYYAAKQLEISENMFPPVENISKINKAINDEFQKVLLEDKDPAKALA DAEAAVNKLLK >gi|333607359|gb|AFDH01000034.1| GENE 75 76098 - 76436 480 112 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_5600 NR:ns ## KEGG: GYMC10_5600 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 110 2 111 113 96 42.0 3e-19 MANELQPVTDWLNANTNKAIRIAKEEQEDIDRVDLQLSQFEYREYQPDAPDDYTNGSALL LYGEGTVLNNGSEEALPQGTFVIPLEGLSVADLREDSVVLRTERAVYSLTLQ >gi|333607359|gb|AFDH01000034.1| GENE 76 76546 - 76866 342 106 aa, chain - ## HITS:1 COG:SA0992 KEGG:ns NR:ns ## COG: SA0992 COG0526 # Protein_GI_number: 15926729 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Staphylococcus aureus N315 # 1 105 1 104 104 100 42.0 6e-22 MSLTTVNDATYLDHISDGGVTVIDFTAVWCPPCKTLLPILEELSNEYAGKVNMLKVDCDD SPEAASAFGVMSMPTVLVLHRGEPVEKLVGLRPKSVYQSVLSRYIG >gi|333607359|gb|AFDH01000034.1| GENE 77 76863 - 77234 456 123 aa, chain - ## HITS:1 COG:STM4320 KEGG:ns NR:ns ## COG: STM4320 COG0789 # Protein_GI_number: 16767570 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Salmonella typhimurium LT2 # 1 115 1 110 110 75 39.0 2e-14 MKIGELSARTGVSIRSLRYYEEQGLLSPVRGDNGYREYASFAVEQVRTIQLYLGLGLNTE QISGFLHCVLMNNEAFCSEVLPVYKQKLSEIEEQIGVLQSIKSNLEERIDYILNDKTKEE KVQ >gi|333607359|gb|AFDH01000034.1| GENE 78 77412 - 77741 336 109 aa, chain - ## HITS:1 COG:BH3000 KEGG:ns NR:ns ## COG: BH3000 COG0640 # Protein_GI_number: 15615562 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus halodurans # 3 100 9 108 116 90 44.0 6e-19 MEQLQSLADTFKLMGDKTRLTILALLRERELCVCDLVDVTGMSQPSISQHLRKMKDAGLV SETRKGQWIYYSLAADQKDRTLELLRQVPSLSHKIAEIEEKTDGNGRCG >gi|333607359|gb|AFDH01000034.1| GENE 79 77890 - 78150 286 86 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_4002 NR:ns ## KEGG: GYMC10_4002 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 86 1 86 86 62 61.0 5e-09 MGKKNRPAPAPRAADTDKPATLKDLLNPQVIEKLKAQSDQMKADEAKRREEEQRKAAEAR KAEQKRLDNNFEHLLANSEMDWRKYK >gi|333607359|gb|AFDH01000034.1| GENE 80 78242 - 79222 675 326 aa, chain - ## HITS:1 COG:mll5466 KEGG:ns NR:ns ## COG: mll5466 COG1262 # Protein_GI_number: 13474559 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Mesorhizobium loti # 45 322 64 361 372 224 42.0 2e-58 MEPKPAKSCCGGSRGQFTELSGLPDGTRTAVMTGMEKADTDPAEGMILLPGGSFDMGTED GEGFPADGEGPVHEVHLKPFYVDPHAVSNAQFREFARQTGYVTEAERFGWSFVFHSFVSP ETARNVTQVPSQTPWWYVVRGASWDHPEGPDSDLRDRMDHPVLHVSWNDAAAYCKWAGKR LLTEAEWEYAARGGLVRKRYPWGDELKPGGGHRCNIWQGKFPLKDNGSDGYRGTAPVHAY PPNGYGLYNVSGNVWEWCSDWFSPAYYACSPADNPQGPASGDARVMRGGSYLCHKSYCNR YRTAARSKNTPDSSAGNIGFRCAADA >gi|333607359|gb|AFDH01000034.1| GENE 81 79414 - 80916 1420 500 aa, chain + ## HITS:1 COG:no KEGG:BBR47_44250 NR:ns ## KEGG: BBR47_44250 # Name: not_defined # Def: spore germination protein # Organism: B.brevis # Pathway: not_defined # 37 458 40 462 491 389 53.0 1e-106 MPDFTIRSYDDFKAYCSQGTNQIQSKIIGIPGESYELFYLDQLINKDILHRDILHPLLEL GGGLGPDELLSYLPVGGGKKIDEWGEIPTLLLAGWIYVHPSFYESGVILQADQIPGRNLT AAENESQIFGPQVSFAESLDQNMALIRSILNDPLLKTESFITGDQTKTKTIMCYMEGLNN NAYVAMVRKRLSNLKTDGILDCGMLSKLLEDNPDSIFPMYFLTERPDRTVGSLLEGKVIV LVGGSSRVMIAPSTFIDFFKAEEDRYVHWQMSAFVFILRMLAVFFSMLLTPLYVAALTFH YEMIPSALLDPLSSSRAKVPFPPLFEALLLEFIIELLREAGARLPTKVGQTMGIVGGIVI GQAAVQAGFTSNLLIMIVALGALASFTSPGFMMGTAIRILRFPMIMIAGFWGGVGIVIGV SFLLIHLLRLTSLGTPYLKPFYPFDSSEFTELFIRRPYGKFMDNLVKTFSFQARKEKGNT SETPDNGQKIDLFEQFQEEN >gi|333607359|gb|AFDH01000034.1| GENE 82 80926 - 82041 827 371 aa, chain + ## HITS:1 COG:no KEGG:BBR47_44240 NR:ns ## KEGG: BBR47_44240 # Name: not_defined # Def: spore germination protein # Organism: B.brevis # Pathway: not_defined # 10 361 12 363 367 280 40.0 1e-73 MNGYPDSPRISVRAYLLFFIITTAQVGVGGASFQRKIYKMVGQDSWVTVLIAGLFCHLVI VAMFSFLKKYPGQDLYGIQKEAFGKWLGGALSFLYVAYLILIALTIIRNYAEIVQTWIFP DMPPWFLALMVLALALYGVLGGIRVIAGIGFVSVLIITLEMLLFYYPLQYADWGYLLPVM NHSPRDFLKGTQEISFSVVGFELLMFVLPFIRDTNKAPRYAHFAIVFTMFTYLVYMFTAL VYFSGGQLIHTIWPTLTLLKIVEFPFIERVEYITVSLYLIGILPNVMLYVWSASRGIPKM SPLKEKASLYLVVVILFVICTFFSSRLEIRRLNEISGQVSIYMAFAYPLLLSMLLFFKRR GVQPPNGGDSP >gi|333607359|gb|AFDH01000034.1| GENE 83 82038 - 83171 1243 377 aa, chain + ## HITS:1 COG:no KEGG:BBR47_44230 NR:ns ## KEGG: BBR47_44230 # Name: not_defined # Def: spore germination protein # Organism: B.brevis # Pathway: not_defined # 1 376 1 366 367 249 37.0 2e-64 MKIRRLCLLALVTVLAATGCVERRVFERIGLVVALGFDKGQGGILSGTSVMYTLDKESGH RATILANQAYTTKKLREDQNRKSSKKLMLGQLRVVLYEEAIARDGLIDLVDSLIRDPSIG TKIYLGISTEKSADLLQYPYRSISNIGTYLYDTIKQNVLEGQIISPTLHEFLRDYYSAGK DPVLPVFVRKGETISSEKAALFRSDKVVGMLSNIDAAYLKLIRNRFKTGTFELKLDKKKL DPYLSENNTDRREHIHTVVRIVDTKQGIRLTDPEKPAYELNMKLKFVLEEISAGINLTES EVTRTIEKLVTDEFTKKMESVLAKMTDLRTDPVGFGEIYRQSLRGGTLTKSDWYDKMSAM SVDVHLNMELLRTGVVE >gi|333607359|gb|AFDH01000034.1| GENE 84 83281 - 84645 1423 454 aa, chain - ## HITS:1 COG:no KEGG:BT9727_0564 NR:ns ## KEGG: BT9727_0564 # Name: not_defined # Def: hypothetical protein # Organism: B.thuringiensis # Pathway: not_defined # 56 403 70 415 415 375 53.0 1e-102 MKKWIGVGMITLTASLALTGCLNDPSKNTAGGAATQPVTAAGRGEADSKAPWIASKNTTR INSSDPYEAAVLTSRTLWMATSDDNRPGGVVLVNPEEWQTALASADLIHHPNNGPVLFVN KDGIPDVTVRELERLKPAGVESNQGVQAILVGNLDPKVEKQAKELGLKTDKIPADNPAAA AKAIDAYYGKVAKENPPSVIVGSSENKEYTMPAVNWISHMPEPLLYVSKDKVPQETIDAL KTRDGKANIYLLGPDSVISAAVEKQLGEYGKVVRIAGKDPVENSIAFAKYKDPATGFGWG ITTPGHNFSLISKENPDLALAAAPFSHLGKHAPLIWTEKDKLPDSVMAYLMSVQPKYDKS PVEGPFNHAWLTGDERSISAAGQGEIDSMLEIVSKTGGGHGGHGGMSGMPAAGDQSGTAG GDAGKNSGTGGAAGTGSGSGSGKTDMSGKSHAGH >gi|333607359|gb|AFDH01000034.1| GENE 85 84760 - 85890 1004 376 aa, chain - ## HITS:1 COG:RSp1162 KEGG:ns NR:ns ## COG: RSp1162 COG0642 # Protein_GI_number: 17549383 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Ralstonia solanacearum # 72 361 211 506 512 180 35.0 4e-45 MKKKLHVRLAVMIVAMATGILIISTATILISTHYHITMYMNQADGGMHDMPRLNTHLEQA IMQSVLWTFLGSIVLAACMGFCVAKRVSAPLVEMKAVAEKMTGGQLDSRTAVGGDDELAE LGQSINELAEQLQRLEKIRVTMTEDIAHELRTPLATLKSHMRALEDGIWEPTPERIHSCY EEIVRLADLINELEELNELDSPVFRLTRSKVPLNNVMEKVKAFMSAAFLEKRIRFTVDAP RSVYLDADPDRLTQILVNLLSNALTYTPPDGEVALKGRRAGDKVLITVKDTGPGIRESDL PYIFERFYRGDKSRNRRSGGSGLGLAIVSKLVQAHGGRISAANEGGAVFRVTLSAAQPPL AAIKTRILQEPDAGDE >gi|333607359|gb|AFDH01000034.1| GENE 86 85887 - 86528 510 213 aa, chain - ## HITS:1 COG:CAC1700 KEGG:ns NR:ns ## COG: CAC1700 COG0745 # Protein_GI_number: 15894977 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Clostridium acetobutylicum # 4 209 23 228 232 185 49.0 6e-47 MSYLQKEGFRTAEAGSGQEALQTVRQGGVDLLVLDLMLPDMDGEQVCREIRRSDAVPVLM LTAKVSKTNQIHGLSLGADDYLTKPFDPRELVARVRAILRRSDDSQLLADRVSFRNGHLE IDSLRQVVFCQGEPVSLTPIEYKLLIALARYPKRSFTRDELVDKIMGFAYDGDVRTIDQH VKNIRQKIEKDPKNPVYIQTVYGAGYRFSGELK >gi|333607359|gb|AFDH01000034.1| GENE 87 86911 - 87231 204 106 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSLATSAYAANESLQVISEPGEDNTAGSISGQDKEGKFTFFTTQSGGQNFAKAAVLSSCG GAPIDLEIKGVGSITKAIKLSSGCSYKVRLWNETGGTAKAFLRNWE >gi|333607359|gb|AFDH01000034.1| GENE 88 87392 - 88411 1102 339 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_1434 NR:ns ## KEGG: GYMC10_1434 # Name: not_defined # Def: S-layer domain protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 39 191 54 201 400 82 34.0 2e-14 MKQIKKWTTALTAGGVLLLSLNSTTQAHWLFKDIDHVAWAQDSIINAYQMNVIDGIADHE FAPQSQVTWAQFIKMVVTTDNPAFTAGGAGSGSWWQPYFTEARQTKGFIDGSVKKENMNK PISRLELARIVSRVIDPALRSKPVDDKTAADVSRKNGILQGRTDTDLALDQNLTRAEAAV IIDRLFQKNGKYGKRHDTLQVKAENGKFILNGLAVGPTTDEVHALLGKPFATGKDEADGN PEEIYKNFVVTYYEGKVSRITFKAADNDLLKAKKDLNGAAVFQNADTSFYYFPASGELLT AADSSVYVRKDSNNFPSYVKGGELKAMNEAAKAYQRQIK >gi|333607359|gb|AFDH01000034.1| GENE 89 88434 - 89456 1161 340 aa, chain - ## HITS:1 COG:no KEGG:BBR47_03410 NR:ns ## KEGG: BBR47_03410 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 13 330 11 332 337 249 41.0 2e-64 MKANLVKQAAVCTLLVASLLAGCGAREQNVQVKEPARQDSAQTASPSPGAAASGNVLARL QLKISQAKEAREVTAFLDENMPKTDKATAVQMFIELQKFYDTHLPGLNASFTEMMGQPGT ADKMREIGYPADFNKIVNDDPLKQWLKNQAAAKLQLSDKEGSYFWKVDYDALNKSYAPYV SDDLKAYLAIQSLENKTPFRSDASLKISRDELGERNLAAEKVLTAYPKGPKAEEIKALYS DYLHEYIHGYRYEAIEEPGMKLIPLVKQSYEKLVKNNPDTKTAGIVKEYLTVINTNKDVI YNPGKKGESIIGDPKPGIDAFWKGLDARIAAAFPDVKTAK >gi|333607359|gb|AFDH01000034.1| GENE 90 89487 - 90482 606 331 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_4430 NR:ns ## KEGG: GYMC10_4430 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 90 312 148 386 402 79 29.0 2e-13 MFLLAAAPGCDRSPSPSVTVVDPPAAETGGHTVLAGIQRLDQFYGMGWSPQGELIGISGA SLVGAPLEFRNLAGDKIRDTGIKGATGARMAPDGKNAWVYHRYEGAADLYNLETGRIIRT GPQTREFPGAWIDNKSYLAVLTEPQGRLVRFGADGEMTPVEHENVESGIVKAALKAGRLY VLSGERELTVTDTDGGGARVWTRSGVSDFALSPDGRQIALVSGTGPDQNALVLADAVRGG REKTAARGRLLQQLSWSPDGSRIAFSVFSPDQGMTGLYVMNADSGRMIPVSYKPNLKSVI DWSPSGTSFMVSEVLSGDITDNMFTTIYQLK >gi|333607359|gb|AFDH01000034.1| GENE 91 90618 - 92030 1373 470 aa, chain - ## HITS:1 COG:lin2727 KEGG:ns NR:ns ## COG: lin2727 COG0642 # Protein_GI_number: 16801788 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 176 462 168 457 459 148 31.0 2e-35 MRISLKWKFALFIAALLLFAVGVLSVLVLNGVHRYQKEEMEKTLNRQAGIANNRIGQQVV TGTRFDPQTFMQLQGQNLAVEIGAASGMRFLLYDMTGARTGDSLPMAESPDVSGVISHAL NNKIVYRVLGDTEDYLAPAGGPDGQIGVLHFQVSLAAQNAFYRNLQNSFLIAGSGVLLFS FVLGLLYMNRQAKAIRRLKEAADDIRVGDFIDAPPFRREDELGSLSDGIYEMSRAIQGSL RTQQHFINNISHELKTPLTSIRAYTDLLHMYEDDPGLVREARDVIDKEAARLYELVEKVL KLAALDKYEFEQQPEKIQIDSLLEDLSSRMRGKAEKFGVTVSHALVPAELWADRESLIQI FLNLLDNAIKYNVENGTVLIRSRIMEEGGVEVEFTDTGVGIPEDRRERIFEPFYTVNRDR ARKSGGSGLGLSLVRQLVNKQHGQIRVEHPAEGGVSFIVTFPAGDDEKFG >gi|333607359|gb|AFDH01000034.1| GENE 92 92021 - 92716 640 231 aa, chain - ## HITS:1 COG:BS_phoP KEGG:ns NR:ns ## COG: BS_phoP COG0745 # Protein_GI_number: 16079963 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Bacillus subtilis # 1 223 1 232 240 188 44.0 7e-48 MDYKILVADDEQTITSAIAYGLKREGFVVETAADGEEALRKTESFRPHVLVMDVMMPRLT GFEVCRKLENRKNLGILLLTVKNDIVDKILGLELGADDYMTKPFDLRELIARVRALCRRL DKSGNGEEPAVLTIGELSLHPEQRLVSLRGAALTLTPKEFDLLALLLSNLKRAFSREELL DLVWGMEYAGGTRTVDIHVQRLRTKLGEPYQHVLQTVYGVGYKAVGEVPCG >gi|333607359|gb|AFDH01000034.1| GENE 93 92977 - 93150 206 57 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSDKHPKGRVEFRQPPVKLTADLPGDPEMREHLDEMRANDGYPGSCGIINPSEGQGE >gi|333607359|gb|AFDH01000034.1| GENE 94 93481 - 94083 762 200 aa, chain + ## HITS:1 COG:BS_yfhC KEGG:ns NR:ns ## COG: BS_yfhC COG0778 # Protein_GI_number: 16077915 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Bacillus subtilis # 7 187 13 190 194 113 33.0 2e-25 MPTDMNLTDAISGRRSIGRVKDEPIPREIIEELLEAGNWAPSHRCTEPWRFFVMTGAGRG VLAEAYADVAAEGSGASGEALEELRAKQGSKAYRAPVIIGVAVSPSEDPAVNRMEEFAAA HSAVQNMLLAAHGLGLAAIWRSGDPMYHPRMKAAFGLREQDEMVALVYVGYPQIAPQAGK RNPVQEKTVWITEGSESAAE >gi|333607359|gb|AFDH01000034.1| GENE 95 94146 - 94277 57 43 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRRFVLLPTGEKAGKAGRPEKRDAGPNRMFLIAPGNARCVVVF >gi|333607359|gb|AFDH01000034.1| GENE 96 94330 - 94461 110 43 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MAEGKLNIAIGRRFPLEEAAAAHARARSRQSTGNVLLDVRAPR >gi|333607359|gb|AFDH01000034.1| GENE 97 94866 - 95036 144 56 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315647156|ref|ZP_07900269.1| ## NR: gi|315647156|ref|ZP_07900269.1| transcriptional regulator, PadR-like family protein [Paenibacillus vortex V453] transcriptional regulator, PadR-like family protein [Paenibacillus vortex V453] # 1 54 62 115 117 89 88.0 7e-17 MQKDGIITVFSDEERKTVYEVTELGHKLITAEIDRLKELYQNALKYGEGFYDDKSI >gi|333607359|gb|AFDH01000034.1| GENE 98 96371 - 97159 749 262 aa, chain - ## HITS:1 COG:BS_mta KEGG:ns NR:ns ## COG: BS_mta COG0789 # Protein_GI_number: 16080713 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus subtilis # 1 253 1 253 257 263 51.0 4e-70 MAYKVKEVADLVGVSVRTLHHYDEIGLLVPDSVNAAGYRLYTDRNLERLQQILFFKEIGF ALQEIKAMLENPDFDRKRALIGHKELLLRKKKRLEDIIETVDRTIASVEGGIPMRKEQLF ESFDRTPLEEHKKKYAAEAREKYGSQTMDAVEKRAGSYTKEQWADIMGQSERIYAKAAAA MAEGPSSPQAQEAAAELRQWITGHFYDCTPEIFRGLGDLYVADERFTANIDRHGAGFSAF LKEAMHIYCDRLEGAGEDRANR >gi|333607359|gb|AFDH01000034.1| GENE 99 97205 - 100555 2988 1116 aa, chain - ## HITS:1 COG:lin1685 KEGG:ns NR:ns ## COG: lin1685 COG0553 # Protein_GI_number: 16800753 # Func_class: K Transcription; L Replication, recombination and repair # Function: Superfamily II DNA/RNA helicases, SNF2 family # Organism: Listeria innocua # 188 1107 150 1067 1072 683 40.0 0 MSSALTRKAIQLLCGRTAYDKGEALNRSGKVVFTYHDPVLQSVEATVDDRESYLVKVSVQ SGGGINAECTCPSLPSFRQSCKHTAAVLLKLLDSSRTDKDFPGAALLERSSEGRSESAAA PSGLPEPGQTGEAPPYDTELTRSMLGLFGGSRRPGSTRFTRDEREMLDLEIVIRPFAYGF RKVMFAAELKIGPKRVYIVQKIRDFLERLDRREAYEFSRVFTYEPNLHGFRQEHDDVLRQ LIKIYQNESLYRETGYSSASSAKAFPGGERMLLIPPFSWTTLQPLLARAPGVKLELAEGV YDGIRVSGEPLPLQFDFDRSETDGYRMDVQGLDRITVMETYGIVLHQGELLELPAHHCKR LAELKRLMETAHRNRLTITPGQMEPFMEKVVPGLMKLGQVRIAPSVSDRIYQTTLKAKLY LDRVRDRLLAGLEFHYGNVVLNPLEEAGRQRGTDYIVMRDTEKEETIIRLMEQNSFAKTE GGYFWDDEEAEYDFLYHTVPLLERMLDIYATSAVKERLYTGFPPQITVEVDERTDWLEFK FELLGLPEAEIRNLIRSMQVKRKYHRLPNGSLVPLESAEFQEIIALMNEAGAGKGDMTDT GFRLPVNRGLHLTDARERGSSVKLGKSFRRLLENMRNPDNLDFPVPERLSPILRDYQKFG YQWMKTLAHYHFGGILADDMGLGKTIQSIAFLVSVLPDIRKKKLPALIVSPASLVYNWLH ELKKFAPEIRAVIADGTKTQRSRALRKGSKADVILTSYPLLRRDTDLYAKESFHTLILDE AQMFKNYTTQTAQSVKQIKAAYRFALTGTPVENKLEELWSIFDAVFPGLFPARQAFNELS REAVARRARPFLLRRLKTDVLKELPDKIETVQASELLPEQKKLYTAFLAKLRHETLKHLH EESFQQNRIRILAGLTRLRQICCHPALFVDGYEGSSAKFEQLLEIVEECRSAGKRMLIFS QFTEMLGLISRELGYEGVPHFYLDGKTKGSERVELCSRFNEGEKEVFLISLKAGGTGLNL TGADTVILYDLWWNPAVEQQAADRAYRMGQKKVVQVIRLVSQGTVEEKMFQLQQKKRTLI EEVIRPGEESVSTMTEQEIRDILMLDDKMEIGENGD >gi|333607359|gb|AFDH01000034.1| GENE 100 100870 - 103314 2910 814 aa, chain - ## HITS:1 COG:BS_yvgX KEGG:ns NR:ns ## COG: BS_yvgX COG2217 # Protein_GI_number: 16080403 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Bacillus subtilis # 14 813 6 803 803 984 65.0 0 MAANVKAAGEEATKQANLQIAGMTCAACANRIEKGLNKVDGVQTANVNFALERATVTYDP SRVNTAQLEEKIGKLGYSTVKDSVDFQLEGMTCAACANRIEKGLAKMPGVTSATVNFALE TAHVEYEPGEVMPADMQHKVEKLGYKALLKQEQGDPAVHRQEELKRHKRKLILSAILSLP LLWSMVSHFSFMSWVWLPDLFMNPWFQLAMATPVQFYIGRQFYTGAYKALRNKSANMDVL VSLGTSAAYFYSLYLTVEWARHGGSVHDGPEMYYETSAVLITLVLLGKLFESLAKGRTSE AIKSLMGLQAKTALVIRDGKEAAVPVEEVIAGDIVLVKPGEKIPVDGEVLEGSSSVDESM LTGESLPVGKKAGDPVIGATLNKNGSLRIRATKVGKDTALAQIIKVVEEAQGSKAPIQRV ADVISGIFVPIVVGIALAAFVIWYFWVTPGDFAGALEKAIAILVIACPCALGLATPTSIM AGSGRAAELGILFKGGEHLESTHGIDAIILDKTGTVTKGKPELTDVLTASMDERRFLELL GAAEKNSEHPLAEAIVSGIAARGVSVPASSEFEAIPGFGIRAVVDGQEVLAGTRKLMSRY EVDAGHAGETMARLEQEGKTAMLVAVNRSYAGLVAVADTVKETSKEAVARLKGMGIEVIM ITGDNERTAQAIARQVGIDQVRAEVLPEGKAEEVKKLQAQGKKVAMVGDGINDAPALAQA DIGMAIGTGTDVAMEAADVTLMRGDLNSIPDAIYMSRRTMGNIRQNLFWALGYNTLGIPV AALGLLAPWIAGAAMALSSVSVVLNALRLQRVKL >gi|333607359|gb|AFDH01000034.1| GENE 101 103570 - 104829 1013 419 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_2456 NR:ns ## KEGG: GYMC10_2456 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 59 416 58 429 432 179 32.0 2e-43 MNTTKLPVKKTAFLAVLTAVSLTACSSIGPAAAGDPTGSGSTAASVAASPGPASGTAAPA SAAPVPSVKPDQIQTRLTDFQLISDAAGFAWGETNGSLRLYRTDDGGRNWTLLSPWDDTF KSGAPLAGGSLYFLDAQHGWTAAADDGRKTVTAFTADGGQSWTKGTLDKPTYAAGLSFAD PLHGWMLTSSDAAMGKSEKTLYATDNGGKVWKPLTSVSLDKPVPGALPLSGHASGMTFKD AASGWIALAGHEEKPVLYRTRDSGKTWNVVPMKVPQELNDSSVTLDGAPVFFKDEPDKGW IPVRTVSGNTESRDAYVTKDGGQTWSFKQTGMQNALTFADSLHGWGFKDKVLHATSDGGT TWNPVSSDPVLTDTLKNNPNVIRLGFAGPQTGWLLLGSEDGKKSKLLKTSDAGKHWILL >gi|333607359|gb|AFDH01000034.1| GENE 102 104922 - 105641 657 239 aa, chain - ## HITS:1 COG:BH0315 KEGG:ns NR:ns ## COG: BH0315 COG3910 # Protein_GI_number: 15612878 # Func_class: R General function prediction only # Function: Predicted ATPase # Organism: Bacillus halodurans # 1 238 1 235 237 293 64.0 2e-79 MYLHEVIKLHEKIRNPHEYPFHIPAIDKLDRLKFHKNVTFFVGENGSGKSTLMEAIAYQC GFNTAGGSRNNLYELDSSEAKLGDYLRLSWMPKMNEGFFLRAESFYHFASHIDELAREDR RAYDSYGGRSLHEQSHGESFLSLFKNRFGRRGIYLLDEPEAALSPARQLVFLSMIHELAR TSQLIIATHSPILLGYPHADIYNFNESPVRLTAYEETDHYRITRRFLENRSFYLQELLD >gi|333607359|gb|AFDH01000034.1| GENE 103 105981 - 106364 293 127 aa, chain - ## HITS:1 COG:BH0367 KEGG:ns NR:ns ## COG: BH0367 COG3411 # Protein_GI_number: 15612930 # Func_class: C Energy production and conversion # Function: Ferredoxin # Organism: Bacillus halodurans # 1 105 1 104 129 107 49.0 5e-24 MTTWNLNGMKHHLFFCNGGSCTKKGAEEVVEAMRDEIKLQEADGRIHTTRTRCQGRCEDA CVITVYPEGVWYKEVTPEIGRRIVREHLIGGSPVEAHISYTYDDELAARPDTKEGQSKTK RKEAQTK >gi|333607359|gb|AFDH01000034.1| GENE 104 106525 - 106782 319 85 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MMDTIGFVSWASIVYLLVIFGFIAIFITSLSMFIRTRVNRRLFTLTKLQRIEEKLDRLLD MQPQNVQKNQDRERLVNEPEDERRY >gi|333607359|gb|AFDH01000034.1| GENE 105 106869 - 107255 314 128 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|238064037|ref|ZP_04608746.1| ## NR: gi|238064037|ref|ZP_04608746.1| MerR family transcriptional regulator [Micromonospora sp. ATCC 39149] MerR family transcriptional regulator [Micromonospora sp. ATCC 39149] # 7 120 135 253 277 68 29.0 1e-10 MKKYIQHQAPVLPVKNVFKALEFYRDVLKFDLAWVLEDTYGSVYNGNIEVHFTKSDKVEV QTLYFFVRNADQVYQFLKTQKVDFIEEIQSKSWGMREFVIRDLDGHRLRIGHGERNKHEI EVLSREIG >gi|333607359|gb|AFDH01000034.1| GENE 106 107269 - 107586 176 105 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIVYPLFVAVIYVIMHLLLFALSLVKYRDVPVEPGAILFRKDSWLLNGVRFFGWILLLYM NTHPQGFGLYTWWMYLVSNLVGLNLLVWIVGIIRERRTDRHLRSL >gi|333607359|gb|AFDH01000034.1| GENE 107 108053 - 108946 979 297 aa, chain + ## HITS:1 COG:BS_yjfC KEGG:ns NR:ns ## COG: BS_yjfC COG5504 # Protein_GI_number: 16078278 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted Zn-dependent protease # Organism: Bacillus subtilis # 1 297 1 297 309 382 59.0 1e-106 MKLAIEPTLNHYASLYDLPEGERENYFRYTMMKPFETMWNLIGVPLKAGQPRGYDVLTAS GMLGYLSVRETESGLAALEKLRQAKAEETALSALRRCMSFAEQAELRVRADELRFGLYLA DPLKLELQGGTCGFGGIPGYIQVMLHPTEWNLPRLPAVIAHEFHHNLRFSYFGWDHGNVT LGDYLVIEGLAESFARELFGEELLGPWVTSMEPDDFEYSLHVFKDALALKGFAEVSSYMF GDLYAREQGFAPAGVSPFAGYSVGYAAVQAFLGANDVTIGEATLLGTEEILGSCGLF >gi|333607359|gb|AFDH01000034.1| GENE 108 108988 - 110226 1252 412 aa, chain - ## HITS:1 COG:sll1069 KEGG:ns NR:ns ## COG: sll1069 COG0304 # Protein_GI_number: 16329903 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: 3-oxoacyl-(acyl-carrier-protein) synthase # Organism: Synechocystis # 2 411 7 416 416 413 49.0 1e-115 MERVVITGMGIISPLGNGVAPFWERLVQGQSGISRIDTFDTTRYKSKIAGLVRDFDGEAI FGRKEARKMDRFCQFALAAADQALLDAELNLDMTDRERVGVYVGSGIGGIGTLLEQNRVL LERGPERVSPTLVPMMISNMAAAMISIRHQALGPTMSPVTACSIGNTAIGEAFRTIRTGE ADVIIAGGSEAAVSEISLSSFGNATAVSTRNEEPAKASRPFDAGRDGFVMAEGAGILILE SLSHAQRRNARIYAEVTGYGASSDAYHMVATHPEGRGAQQAMKSALASAGITPGEVDVIS AHATSTGVGDKSETSAIKNLFGEDAYRIPVTANKSMTGHMLGAAGGAEAIALVKTLQEGI IPPTINLEQRDPDCDLDYVPGTARKAELEIGLSNSFGFGGHNAVIVLRKYRE >gi|333607359|gb|AFDH01000034.1| GENE 109 110349 - 111188 806 279 aa, chain + ## HITS:1 COG:mll1636 KEGG:ns NR:ns ## COG: mll1636 COG1396 # Protein_GI_number: 13471611 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Mesorhizobium loti # 3 277 9 281 290 180 37.0 2e-45 MNKEERLEALSAFLKSQRAKLLPQNMGLPAGTRRRTPGLRREEVAQLAGVSTTWYTWLEQ GRDIKVSASVLENIASALQLTVDERKYLTSLALEASSGIRLLQEELPQISPSLQKILQEL KNCPTIISDRRCTIVGWNEAATRVFLDFEKIPPEQRNMISLLFARKEFRRLAVNWEDFVS GFLAIFRAYYGQYFEDEWYNGFLAEMKLTYPEFNRLWEQSKVSSAPEVLIEFRHAKAGKM LFDLTSLQVHGSTDLRCSIYTPAQESSTEMKLMQLMDRS >gi|333607359|gb|AFDH01000034.1| GENE 110 111537 - 111776 282 79 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTEPKKPSHELERQTQQKGNRDHPEQYPTGNESLFDLHESEKHVDPIPMEDLNMEQKEEK DKSATKSDSSSPDKYHSGF >gi|333607359|gb|AFDH01000034.1| GENE 111 111893 - 112414 431 173 aa, chain - ## HITS:1 COG:BH1014 KEGG:ns NR:ns ## COG: BH1014 COG0563 # Protein_GI_number: 15613577 # Func_class: F Nucleotide transport and metabolism # Function: Adenylate kinase and related kinases # Organism: Bacillus halodurans # 2 166 3 167 178 170 46.0 1e-42 MKLLLIGPGGSGKSTFARELGEKLELPLYHLDAYYWKPGWVPTPNEEWDEFIGKLIRQPA WIMDGNYGRTLDRRLKAADVVIFFDLPSWLVVYRVFKRRIMYHNRTRPDLNEGCPEQLDW DFVKWVWNFRRHKRPQLLEQLENCGDHVRVFIVKNGKDKQNILEELLSFRSLV >gi|333607359|gb|AFDH01000034.1| GENE 112 112611 - 112949 329 112 aa, chain + ## HITS:1 COG:no KEGG:Chy400_3397 NR:ns ## KEGG: Chy400_3397 # Name: not_defined # Def: hypothetical protein # Organism: Chloroflexus_Y-400-fl # Pathway: not_defined # 8 112 8 112 113 90 45.0 2e-17 MAAVLAVNLGVRFVLECCLLVAVGYWGMTKGDGWMMKTLLGAGAPLLTAVVWGLFMSPKA SYSLPQPWHLLMEAAIFGMGTASLFAAGHTRLGVLFLSSAVVNRLLMAVWSQ >gi|333607359|gb|AFDH01000034.1| GENE 113 113088 - 114710 1303 540 aa, chain + ## HITS:1 COG:no KEGG:PPE_02394 NR:ns ## KEGG: PPE_02394 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 30 538 19 526 528 582 56.0 1e-164 MAFFLRGFPKIANRPPKRQPRQQPSPGTSNAGSAKAAGAAEEPGGASLAERTGWLKTLLA HCSDVVYHTFTAGKNTPCLLVYIEGAVDRNDLQQSVLKVILGDRFVQGEESLAGNLFDCK MLPADRQKTLLTMKDALQDILEGSAVLLLDQESRMMSFGLSSYIKRQIDEPNSETVIRGP REAFVESIQDNLSMLRKRLRTHNFKCVEQIIGTKTRTRVITVYMEDVCSPALVDEAARRL ADIEIDSVMGSSYLEEFIEDNPYSPFPQLQYTERPDVVAAALLEGRIAVIVEGTPIVIMA PTTLFMMMQSPEDYYQRFWAGSWIRWIRYVFLFVSLLLPSFYIAVTTFHPETIPERMLIT IASSREVVPFSAFVEALIMEVFFEALREAATRIPKSVGQAVSIIGALIIGTAAVQAGIAS AAMVIIVSLTGIASFIIPHYDLGLSFRLLRFPIMILAGGFGLVGIACAMILIYIHLTELK SFGIPYLSPVVPMVPKDMKDIFVRAPWWTMITRPKFTSSRNLHRQKPNGRKWANPAEEGD >gi|333607359|gb|AFDH01000034.1| GENE 114 114716 - 115903 989 395 aa, chain + ## HITS:1 COG:no KEGG:PPE_02393 NR:ns ## KEGG: PPE_02393 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 12 365 18 371 401 274 35.0 7e-72 MRITARLAGILLSLLLLAGCWSSVELNDRAFVRMVMVDKTDDGYELVLGMPLANRLIPGE VGGSSQSGREPFTYFSKIDSNLSDAFRKIQNDLSRKITFGQTRVVIIGNRYAEEGIGSLL DLIAREPRVHINANLFVTHGSVDKVIQLPLTMERFPSDIFYAYGRRKIATTINFKDILKA HYMGGDFLATRLVFGKMGIMNESKEEYWMGPDGAAVFKGDKMVGSLPGKNAAGALWIQGK PETREITVPSPTDGKVVSLLVERNSTRIRPELTGDALTYNIHVKTDLDIVASYSNINLKD HKQLKEMEKSVENKIKEDVEHSIQLTRQMGTDAFQLNRYLEWRYPKEWNRINKEWNELFS KKVKIQCTSDAIIRRIGVVKKTFTGDPQKDKEVSK >gi|333607359|gb|AFDH01000034.1| GENE 115 115900 - 116112 228 70 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MITVLVTYAIVMLIQWRYLVRCGKKKRTFSVSLSVTGGLCACVLLLHHSKNGETLVEWLE IIFGSLHVTS >gi|333607359|gb|AFDH01000034.1| GENE 116 116133 - 117242 1035 369 aa, chain + ## HITS:1 COG:no KEGG:PPE_02391 NR:ns ## KEGG: PPE_02391 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 1 355 1 355 370 258 42.0 3e-67 MDKITPLQTYMLFTQYLLSTLVSFLAAPLIQNAGYSVWIPVIAGSLLGGVLTYLAYKLGC RRPGRYMAEYGREIIGRPLHYLLVLFMAFVYLFTAALVLRQLTDFIVEIYLPGTPLWAVA GLLGLCTTRLVHSGVTNIFRSGQGVFFVALALVVLIAVASCQDIVPYSVVSLVTNFDGRG IFSATAMITGLFGEMTFIALFFPKFKETGRTMKALVWAIVTAAVLTLGNLIPMVLLFGPS LAANLTYANLEMTRYIQLGNFIQNMDPILILMWLFTLLVKISLFLYISVIAVTQTLKMKD TRPLTLPFGVTVVFLCLWMVNSSETLDRFAGTAEVPMMLLAELIPVVYLLVDALRSRFKK RQPVREPST >gi|333607359|gb|AFDH01000034.1| GENE 117 117353 - 118636 1394 427 aa, chain - ## HITS:1 COG:BH1294 KEGG:ns NR:ns ## COG: BH1294 COG0860 # Protein_GI_number: 15613857 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: N-acetylmuramoyl-L-alanine amidase # Organism: Bacillus halodurans # 191 367 4 177 253 175 50.0 1e-43 MAVSQHPIMGTSLASLDVITAFIRKVNPSFNPEIARQFLTVGAKYGVRGDAAVAQSIHET NWFRFGGDVKPEQNNFAGIGATGGVPGNSFPTIKDGVTAQIQHLFAYASKNSLPAGEAVV DPRFTLVTRGIAPNWEDLAGRWAVPGYDRNKYASLQAALEAGETYGHSILKLYDGMTAAD QVPVPTVKPLIVIDAGHGGTDSGATGSGLLEKDLTLALALQVRDRLVNEYAANVKLTRST DVFVALSDRANLANGWGAAYFVSIHINAGGGEGFESYVYPGTSSGVTGQKRTIVHDTVVH YLNTLGAADRGKKEADFAVLRETDMSAVLLENLFIDNATDGSLLGNSDVLTNLANAIGDG VAKAMGLNPGIQPEIPVWKTEGVDWLYEKGLLTDPAWKDKLDEPLPLWAEAVVLKRLYDL LSGDGTQ >gi|333607359|gb|AFDH01000034.1| GENE 118 118846 - 119442 616 198 aa, chain - ## HITS:1 COG:CAC3314 KEGG:ns NR:ns ## COG: CAC3314 COG3560 # Protein_GI_number: 15896557 # Func_class: R General function prediction only # Function: Predicted oxidoreductase related to nitroreductase # Organism: Clostridium acetobutylicum # 2 197 4 198 198 246 57.0 2e-65 MDFNTAVKNRRSIYAISKDAVVSDEKIVELVNEAVQHTPSSFNSQSARLVVLLNEQHDKF WDLTTEILRGIVGDGEKFEATAQKMTLFKNGYGTVLFFEDQAVVEGLQQQFAAYADNFPI WSHHSSGMLQFVVWTSLEAEGFGATLQHYNPLVDEAVRTEWNVPATWKLVAQMPFGKPAA EAGEKQFQPLEDRVKVFK >gi|333607359|gb|AFDH01000034.1| GENE 119 119618 - 120874 1355 418 aa, chain - ## HITS:1 COG:BS_ydgK KEGG:ns NR:ns ## COG: BS_ydgK COG0477 # Protein_GI_number: 16077635 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus subtilis # 17 406 10 400 402 290 46.0 4e-78 MSNHSLAAAEGAGRSRKLTLAVILGSLSAFGPLSLDMYLPALPRLADDLHTTASLAQLSL TSCLLGLAIGQVFAGSISDIKGRRGPLMIGLAIYTAASLLCSIVPSIWGLIVLRFIQGMA GSAGIVLSRAVVRDMYSGPELTRFFSLLMLINGVAPILAPIAGGQLLQFTSWQGVFIVLA LIGVVMLLASWKGLPETLPPGRRTKGGVKQTVATFKTLLRDRMFMGYALSQGLVAAAMFA YISGSPFVIQNIFGASPQMFSLFFAINGLGIILAGQIAGRLAGRVSETKLLISGLIIAGL GGVTLLAMILAGAGLTAILIPLFFVVSSVGIVNTAGFSLAMQNYGHSAGSASALLGLLSF IFGGLVAPLVGIAGSGTAVPMGIVIAAADVGAILCYYFMVKRHAARGGQRAESAADIH >gi|333607359|gb|AFDH01000034.1| GENE 120 121080 - 122162 1176 360 aa, chain - ## HITS:1 COG:BS_ykgB KEGG:ns NR:ns ## COG: BS_ykgB COG2706 # Protein_GI_number: 16078366 # Func_class: G Carbohydrate transport and metabolism # Function: 3-carboxymuconate cyclase # Organism: Bacillus subtilis # 11 356 7 344 349 239 37.0 8e-63 MSGQGERLLVFVGSYAEPEGPGVYVMELNEETGALTKLDEVSGLKNPTFLNLDVQGRKLY AISEGTTSEGARTGSAYAYTVDPGQGSLTEMNHAVTVDAPTCHIQRDASGRYLVVASYHG GLVGLVELRADGTIGRLLDVKQHEGHGPNPERQEQPHPHSAFFSRDNRFVFVPDLGLDRI VSYALDTENNVLKPHGETAVPPEAGPRHMAFHPGGKLAFVINEMDSTITSLRYDEETGVL EPIETVTTLPEGFTGESYCAEILVSEDGAYVYGSNRGHDSIVVFAADQASGKLTLVEHVS AEGKHPRNFALTPGGAFLIAANRDTDNIATFRVDRSSGRLQYTGQSAAVSKPVCVRPAYL >gi|333607359|gb|AFDH01000034.1| GENE 121 122349 - 123209 1111 286 aa, chain - ## HITS:1 COG:BH1970 KEGG:ns NR:ns ## COG: BH1970 COG2323 # Protein_GI_number: 15614533 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Bacillus halodurans # 1 280 1 282 292 166 32.0 7e-41 MPDWIVVVLRTLMVIVIVLAAAKLLGKRQNSRLSFFEVTTGVAAAVLAVYITLSRTADWY LGIIALFVWILAAVGIGFLQMKSKAARDFIDNRETILIKKGKIMEENLKKERLTTDDLLQ SLRRKNVFQAADVEFAVMEASGEINVLLKKENQPLTPKHLGIKVGPAEEPQAVIMDGKAL DEPLAAIGLNRGWLQTQLETMDATIDNVFLGQVDSYGELYVDLFDDKLQVPQPQKKAVLL ALLKKCEADIEMFGLSTNDPEAKRMFEECSRSMEEMISEIKPLLSR >gi|333607359|gb|AFDH01000034.1| GENE 122 123416 - 123622 353 68 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTVGSQVKTCLASLKSAQASLEGFALSTQNQEAKSLFENAAKTTQEVVTQVQGRVQQLEN EEPQYQGF >gi|333607359|gb|AFDH01000034.1| GENE 123 123790 - 124407 569 205 aa, chain + ## HITS:1 COG:BS_yojJ KEGG:ns NR:ns ## COG: BS_yojJ COG1624 # Protein_GI_number: 16079003 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 2 167 3 167 201 133 38.0 2e-31 MAIPYADCDFSPMKQNLKDDLEKLILRLHRSIQTLDEENHCMLSEIEGIKENFLNIESRA STFYLNCYLSPFTDKYTELSVSVQNLSKRRHGALIVVQRNDSLDGLIQPGVAIGASVTQS LLESLFYPGTPLHDGAVLIKFNEIVSAKNILPLSHIVQADPKLGTRHRAAIGITELSDAI VLVVSEETGRVSFASKGYLYPIVPR >gi|333607359|gb|AFDH01000034.1| GENE 124 124605 - 125018 569 137 aa, chain - ## HITS:1 COG:BH3304 KEGG:ns NR:ns ## COG: BH3304 COG2259 # Protein_GI_number: 15615866 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Bacillus halodurans # 1 134 1 129 129 114 53.0 4e-26 MNGKTEIGLLIVRLVLGVTFLVHGLDKFQSGLGNIAGWFESIGLPGFLAYVTAIIETVGG AAIILGLGTRIAAALFGVLMIGAMFSVKFSAGFTGNGQSAGFELDLALLALSVLLALTGS RYLAVDSLLPGSRQTES >gi|333607359|gb|AFDH01000034.1| GENE 125 125092 - 125859 727 255 aa, chain - ## HITS:1 COG:CAC0851 KEGG:ns NR:ns ## COG: CAC0851 COG3384 # Protein_GI_number: 15894138 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Clostridium acetobutylicum # 1 255 1 255 255 321 54.0 1e-87 MIPSLFLAHGSPALAIQDTEYTAFLRKLGQQWKPKAIVIFTAHWESEVLTLTSTDETYET IYDFYGFPDELYRIAYPAKGSVKLASRLEGLFRERGIEVAADSGRGLDHGSWTLLYKMFP EADIPVIQLSVNPYLPPDKQTAIGEALRGLGEEDILVIGSGVTVHNLRMVNWGQEEPEPW AVEFDDWLIRHTLERDTDTLFRYETLAPHSRMAVPRAEHFVPLFLALGSGSVERTPRVIY RGYEFGTLSYLCLQF >gi|333607359|gb|AFDH01000034.1| GENE 126 126008 - 126322 324 104 aa, chain + ## HITS:1 COG:BH3303 KEGG:ns NR:ns ## COG: BH3303 COG1733 # Protein_GI_number: 15615865 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus halodurans # 1 104 1 104 107 149 70.0 2e-36 MKESNLCPRFEKGMQLISKRWAGLIVYQLLSGPQRFCTIESNLPLSGKILSERLKELEQE GVIRRNVYPETPVRIEYSLTEKGLALEPIIRGVEQWSSAWLQPE >gi|333607359|gb|AFDH01000034.1| GENE 127 126427 - 126849 541 140 aa, chain + ## HITS:1 COG:BS_ywnA KEGG:ns NR:ns ## COG: BS_ywnA COG1959 # Protein_GI_number: 16080716 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Bacillus subtilis # 3 137 2 132 133 135 53.0 2e-32 MTISSRFAVAVHILSLLELNKEGRNTSEYIAGSVNTNPVVIRRITGMLNKAGLTRTSPGV AGAALGRTPAEITLLDIYRAVQADMQDELFAMHENTNPDCPVGKNIQSTLETRFNRAQLA MERELAGVTLADIVADLAPC >gi|333607359|gb|AFDH01000034.1| GENE 128 126942 - 127181 108 79 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MPVAVMAAQPARGLLLTDGRVSAADHAYKLPAILPAILPAPAVAVYTRSLFGTVIAGMLS LAAHRFYSKAHQKKTSSPA >gi|333607359|gb|AFDH01000034.1| GENE 129 127258 - 127782 503 174 aa, chain - ## HITS:1 COG:BS_ycgE KEGG:ns NR:ns ## COG: BS_ycgE COG1846 # Protein_GI_number: 16077377 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 7 148 9 148 155 132 49.0 2e-31 MSSVLPESEEKVLELIGHMRKMSTRIVLFQQNAAHSLGVIHTDLKTADILNEKGPITAGE LAKLTGLTTGTVTALIDRLEQAGFVRREKDPHDGRRVIIVPVREKQKAIGALYKPLGNMT REVCEAYTPEQLDLINAFLSRMVGVFEQANSGVSGPKPDDRCCKNDRSERHDYE >gi|333607359|gb|AFDH01000034.1| GENE 130 127957 - 129480 1751 507 aa, chain + ## HITS:1 COG:BS_mdr KEGG:ns NR:ns ## COG: BS_mdr COG0477 # Protein_GI_number: 16077376 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus subtilis # 21 406 24 410 426 472 68.0 1e-133 MIQKDNNLNQVVAGLLLAILMSAMDNTIVATAMGTIVSDLGGFDKFVWVTSAYMVTTMAG MPIFGKLSDMYGRKRFFIFGLIVFLLGSALCGIAQSIVQLSIYRAIQGIGGGALLPIAFT IVFDIFPPEKRGKMTGLLGAVFGSASVLGPLLGAYITEYISWHWVFYVNLPIGLVSLYLI MRAYKESPQHVEQRIDWWGAITLVVAVVSLMFALELGGKKYAWDSVPIVSLFASFAVFFI LFFIIERKAKDPIISFWLFKRRLFATSQLLALLYGATFIILTVYIPIYVQAVFGGSATNA GLILTPMMLGSVAGSAMGGIFQTKTSFRNLMIISVFSFLAGMYLLGGLTPETSRALLTVF MIIAGFGVGFSFSLLPTASTFNLEPRYRGTATSTNSFLRSFGMTIGITIFGSIQANVFTD KIKTAFQGMNGGGMAGIDMSNPQQIFQADKRALIPPDILNKIIHALSESIAFTFMVALIP IVLAVIIVFLMGNARVVPAKEKTGQPS >gi|333607359|gb|AFDH01000034.1| GENE 131 129631 - 132255 2438 874 aa, chain + ## HITS:1 COG:alr2279_3 KEGG:ns NR:ns ## COG: alr2279_3 COG0642 # Protein_GI_number: 17229771 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Nostoc sp. PCC 7120 # 490 727 2 243 260 241 51.0 5e-63 MTSLQINPQSLVDHLFAYTTDGLALYSRNGVWMQVNEPWCRLCGYSPEELARIALKDLVH PDDWKDEWPEAPATDSDVQKVRLFHKSKREIPVLLTISRLIGNSSETTECYVLQASELSP VQDDVQTWNRIKQQYRLMSEHSRDLFYHTAPDGTILDCAPSIRRILGYSPDELIGITEDV LYSFPPSLQTQQSVSAVNEECARQVKLLHKDGHHIWFDLTVKTIIGDNGEELSLKIGQEI SDRKKNEQFIAEAQRIALMGSWEWDISSNEILFSDQFFLVSGIDPESTAVHGILSLVSED LHPAFKEELDKALVDKELSFEYRSRKEAGADKYLHIRGLVTYSDQGIPLKINGTIQDITD RKLVERKLQETVERYTSLKKYNHDAVFSLDLEGKILNTNLMAQEMTGYAVHEMIGACFTE LLGTEEITDILEASLKDNSAEKRIDKITDKYGNTVEVLTTIAPIIISEANVGYYIIAKDI REQKKLMIEKESAEATNKAKGEFLAMMSHEIRTPMNAVIGMTDLLLETTSLSSEQREYLN IIRKSGDTLLVIINDILDFSKIESGVTELVEEPFDIRTCILESVDLLTPKAIEKNLEMTC ALSQNMPSTLLGDAKRLKQVLINLIGNAVKFTSAGNIMVSVKKQAHSQGTVELLFQVKDT GIGIPKEKADKLFQPFYQLDNFMTRETEGTGLGLAICKKLVQLMGGDIWVEQPEEPGAHF LFTVVLKEAAREAVPFPKDKTAAEKAYGHSLKILVAEDNRINQLVLVKMLTNQGHTVRVV DNGSEVVEAALTERYDLVFMDVHMPEINGLDAARMIKEALRPEEYPIIVAVTANALKGDR EKCLAAGMDDYISKPIFSRTVNETIQKFFSFQQA >gi|333607359|gb|AFDH01000034.1| GENE 132 132342 - 133043 671 233 aa, chain - ## HITS:1 COG:DR0450 KEGG:ns NR:ns ## COG: DR0450 COG2120 # Protein_GI_number: 15805477 # Func_class: S Function unknown # Function: Uncharacterized proteins, LmbE homologs # Organism: Deinococcus radiodurans # 8 185 16 226 281 71 30.0 1e-12 MAPVVAFIYAHPDDESFASACLIRSLADRGIRSVLLCATRGDAGRPGPLGPMTPEQLAAA REIELRTACDLLGVSAVKHLGLPDGKLAGMDRPALADAVAEFLNATEASVVVTFPEDGIS GHPDHIAVHHAVNEAVLGGRCPHVQKYYYNLPFAGVKADAPSVLRLETAPYWKVKAQALL AHRSQQFSVEKAFGQTETLPESTDFPYENFGLVWLRGEKNPVRKEESVLDDLI >gi|333607359|gb|AFDH01000034.1| GENE 133 133083 - 133358 367 91 aa, chain - ## HITS:1 COG:BS_yneR KEGG:ns NR:ns ## COG: BS_yneR COG4841 # Protein_GI_number: 16078867 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 79 1 81 95 74 46.0 5e-14 MQIKITEAASDLFRKDWGFGGGDHVRIFVRYSGGGEDAFSFGIIKDAPHYPAVTAEAGGV TFFMEEKDVWYLDGKDLHVDGIAEEIVLKRL >gi|333607359|gb|AFDH01000034.1| GENE 134 133565 - 133738 341 57 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MEQPKGQEVRNEKNPDHNSPEQEHKVDRKQDIEPQAEEWNTRNKISGTHQDENSRNL >gi|333607359|gb|AFDH01000034.1| GENE 135 133822 - 135051 1343 409 aa, chain - ## HITS:1 COG:BH2245 KEGG:ns NR:ns ## COG: BH2245 COG2309 # Protein_GI_number: 15614808 # Func_class: E Amino acid transport and metabolism # Function: Leucyl aminopeptidase (aminopeptidase T) # Organism: Bacillus halodurans # 1 408 1 408 410 476 56.0 1e-134 MTSFQKQLEKYAELVVKVGVNIQPGQILYIESPIESVEFTRHVVRKAYEAGAKFVEVNWS DEQTTRIRYESAPDESFDFYPEWTARMMEQLAEGNGALLNIKVPDPELFKGIDPGKISRA GKAASIARQRFQGYVRNHKFSWCLVKAPTKAWADKVFADLPEDERVSVMWETIFKMNRVD KDDPVAAWKEHIAQLSETHERLTAKKYRRLHYKAPGTDLSVELPEGHLWLGGGGENEQGD YFVANMPTEEVFTMPKRDGVNGTVSSTMPLNLGGRLVDKFKLTFKDGVVVDYSAEVGQEH LKSLFDTDEGAKRLGEVALVPHDSPISNLNRIFYNTGIDENASCHFAVGSAYPFTLENGT KMSQEELLARGANVSLTHVDFMVGSADLDIDGELADGTIEPIFRKGNWV >gi|333607359|gb|AFDH01000034.1| GENE 136 135393 - 136847 1635 484 aa, chain + ## HITS:1 COG:BH0414 KEGG:ns NR:ns ## COG: BH0414 COG0659 # Protein_GI_number: 15612977 # Func_class: P Inorganic ion transport and metabolism # Function: Sulfate permease and related transporters (MFS superfamily) # Organism: Bacillus halodurans # 2 483 3 486 486 534 63.0 1e-151 MLRQLNRTWFSNPRSDILSGITVALALIPEAIAFSIIAGVDPMVGLYASFTMAFVISFFG GRPGMISAATGAMALVMAPLVKEYGLEYLFAATVLTGILQYILGLLKLGKLVRFVPQSVM TGFVNALAILIFTAQLTHFVGQGWVMYALVGVTLAIIYILPRFTKAMPSALAAIILVSIV TISFGIPVNTVGDMGRITSSLPLFHVPQVLFTWDTLKIIFPYSLSLAFVGILESLLTATI LDEMTDTPSDKNREVRGQGAANIVTGFFGGMAGCAMIGQSVINIKSGGRTRLSTLVAGLF LLFLILALGPVVEQIPMAALVGVMIMVSIGTFDWKSIPRLTKIPLSDAFVMIVTVAIVVA THDLSKGVFAGVLISAVVFSWKMAKIRATAKVSADGTKTYTVSGQMFFGTMTHFIEQFDY MNDPERITIDFSHSHIWDHSAVTAISKVVLKYDLLHKKVSITGLNEESRRLVERVGLAAP GGHG >gi|333607359|gb|AFDH01000034.1| GENE 137 136936 - 137220 69 94 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MEFTIQCFSITSAGMPAFFNSTAAEIPQGPAPTMMTSSIRWWPPSVTDEDRRKYSYLRLT VSSDGFYTIVTQSEIKRQPAGRPAYDQGFSSARE >gi|333607359|gb|AFDH01000034.1| GENE 138 137105 - 138094 1214 329 aa, chain + ## HITS:1 COG:SA1311 KEGG:ns NR:ns ## COG: SA1311 COG0492 # Protein_GI_number: 15927061 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Thioredoxin reductase # Organism: Staphylococcus aureus N315 # 3 329 5 328 328 308 46.0 1e-83 MEEVIIVGAGPCGISAAVELKKAGIPALVIEKHCIVNSIYLYPTHLQFFSTPDLLEIGDI PFTTPSDKPSRQEALFYYRNVARHYDLNIRSYEEVTSIRKKDGHFVVTSVNRGGQQIVTE AKHVVISTGYFDTPNLLGIPGEELPKVTHYYREAHPYTNMKVVIIGGNNSAIDAALDLMR VGAEVTVVYRQEQMSPSIKPWVRPIFESMVAKGHIRMLYSSRVVRIDDLTVTVDTNGTQT VLHNDFVLALTGFRPDRTLMIGSGVELQGEHLKPLYNPETMESGVPGLYVAGVIASGHNA NEIFIETGRKHGVAIAQHIASKGQNASSS >gi|333607359|gb|AFDH01000034.1| GENE 139 138152 - 138874 839 240 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_1014 NR:ns ## KEGG: Pjdr2_1014 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 4 214 3 208 215 108 35.0 3e-22 MFERKDYLLTMITQMTEAIATRILKLRKEKKHAEALAELGELYGRMQLPPSKLLGSVPEE DALRMMMTGASLSGEKLLAAGKLLREEADIYEEMSGEREAYQRRVNALYFYLTAAELGAE SDDVSLHAEIAYLNHRLKAYRQPATVLYKLMEYCTAAGSYDEAENLLYELKGRESSGDGE LPEWGLAFYRRLLACSDEKLQAGKLPRDEVESGLREWQAAWPRLSAGGTAAAAEGAESAG >gi|333607359|gb|AFDH01000034.1| GENE 140 139292 - 141949 3008 885 aa, chain - ## HITS:1 COG:BH0785_1 KEGG:ns NR:ns ## COG: BH0785_1 COG4724 # Protein_GI_number: 15613348 # Func_class: G Carbohydrate transport and metabolism # Function: Endo-beta-N-acetylglucosaminidase D # Organism: Bacillus halodurans # 24 549 26 554 556 631 58.0 1e-180 MKKIGVSLAVSITAFAAMGLSASAAQPHSSYWYPEQLLKWSPGADPDAKFNRGSIPLQER FTGDKVNANASKEPKIVALSALNAGTSGVPSQGSDKFTANTFGYWQYVDKLVYWGGSAGE GIIVPPSADAIDAAHKNGVPIMGTVFFPPSVYGGKYDWVKQTLQQKPDGSFPVADKLIEV AKTYGFDGWFINQETEGGTPADAQKMKEFLKYLEARKSSSMQIMWYDSMTKDGAISWQNA LNDKNEMFLQDKQQKVSDSMFLNFWWRDLAGSAAKAKSLGRSPYELFAGIDVEAKGYDTG IQWDMLFPKGKPAATSLGIYRPDWAFNSAENMKDFFARENKFWVGQNGDPSRTDTNQAWK GMANYVVEQSPVNRLPFVTHFNTGSGQQYYADGKLVRDKGWNNRSLQDILPTWRWMAESK GTALKPSLDWSDAYYGGSSLKVEGTLSPANATTLKLYRTDLAIEPATKLSVTYKTAQKPG MKVALTFADPKDAVVYLDVKDKVQPGWTTETFNLTPYKGKRISSISLVFDSKETIPAYAI NIGKLSISSAKQEQSSSLPAVKDLKVTGSDFRDGIYGDARLEWTAPDQDVKQYEIYRVLP GGNEEFLGATPNNVYYVPEMKRSNKEDTTVLKVVAVNGQYRAGQAATAAIKWPAYPKPAA RFKTDKTLVAPGEQVTLIDQSTEVTEEWLWTIDGASPSTSTDKQPVVTFAEEGAYSVTLT AKNSAGQDSVTKQALITVRKDATAAVNLALGKTAKADNACGPAEGAANAVDGKVTGNSKW CALGNLPHWLTVDLGTEKTISGFVLKHAEAGGEWAGFNTSDYTVQVSADGVTWTDVLEVK GNRAGETNDAVALVKARYVKLNIVKASQGGDTAARIYEFEVRGLQ >gi|333607359|gb|AFDH01000034.1| GENE 141 142271 - 143764 791 497 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15900035|ref|NP_344639.1| ABC transporter, substrate-binding protein [Streptococcus pneumoniae TIGR4] # 1 497 1 491 491 309 37 8e-83 MAGKKTLVFMLALMLAFGSLLAGCGSKSEGGDSKQGAGDSTEKEVKLKVYLIGGPQRDLP KVQEEINKYVKEKINATLDITMIDWGDYSKRMQVLSASGENFDIAFTSSWAFEYRTNAAK GAFMPLNDLLDKYGKGIKEELDPRFLEGTKIDGKNYAVPVNKELGEQWVWRFNKKYVDKY KIDMTQVRTLQDLEPYLKQIKEGEPEDITPLAVPKGFKPYIPYDFILGDEFPVGMKIQDN ASDFKFVNILETPELKASLETIRKYYQAGYLRKDVATLDGIDNIKTGKWFVDREITQPYA DLGWSRSAGYDIVSTPMQDPVVFTGSASGAMHAISANSKNPERAMMFLNLLNTDKYLRNL FSFGIEGTHYKKVSENVIEDLPAMKDGFQMPGFALGNMYLTYLHKEEPADKWEAFKKFND SAKVSPTFGFNFDVDPVKTEVASISAIAREFYPAIMTGSVDPNEYLPKAMEKMKAAGLDK VIAEAQNQFDKWKAEKK >gi|333607359|gb|AFDH01000034.1| GENE 142 143863 - 144819 1008 318 aa, chain - ## HITS:1 COG:BH0795 KEGG:ns NR:ns ## COG: BH0795 COG0395 # Protein_GI_number: 15613358 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Bacillus halodurans # 18 318 21 322 322 332 56.0 5e-91 MSDLSGSVKAGATAQARKGRKPKDLNAISPFWNFVFSTGVGLFALSCVFPFLFIIIISFT DEKTLAIEGFSLVPSQLSTASYRFLMNSGQQLLQSFGVTLLVTVLGTLLTLYLVATYAYA LSRKSFEQRRFFSFLAFFTMLFSGGLVPSYIVVTQFLHLRDSIWALILPSVLNAFYILVM RTFFSTTVPDAIVESAKMDGATEFGVFTRIVLPISLPGIATIGLFSTLAFWNDWFNALLY IDKPTLIPLQTMLMRIQNNMDFVVQNSSKVVSYDIAASLPTETVRMAMVVLATLPIALAY PFFQKYFIQGLTIGSVKE >gi|333607359|gb|AFDH01000034.1| GENE 143 144859 - 145788 1074 309 aa, chain - ## HITS:1 COG:lin2117 KEGG:ns NR:ns ## COG: lin2117 COG4209 # Protein_GI_number: 16801183 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type polysaccharide transport system, permease component # Organism: Listeria innocua # 1 309 1 309 309 388 63.0 1e-108 MPGIVKSLVRNRAFLLLVLPGAIWFIIFAYLPMFGTIVAFKDFRIHPDGFFASVFNSEWV GLKNFEFLFSTNDAFIITRNTILYNLALIFLGLVCAVGFAIVMNELLNKRLTKVYQTAMF MPYFLSWVIISYFVLIFLNMEKGVFNQLLAYFGADPVNWYSEPKYWPYILIFMGIWKNIG YGSVVYLAAIAGIDRSYYEAAMIDGASKWQQIKYITLPQLKPLMIILTVLALGGIFRSDF GLFFQVTKNSGALYPVTDVIDTFVYRGLTVMGDTGMSTATGLYQSVVGLILVLTANYAVR KIEKEYAVF >gi|333607359|gb|AFDH01000034.1| GENE 144 146028 - 147584 1294 518 aa, chain - ## HITS:1 COG:BH0793 KEGG:ns NR:ns ## COG: BH0793 COG4753 # Protein_GI_number: 15613356 # Func_class: T Signal transduction mechanisms # Function: Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain # Organism: Bacillus halodurans # 1 515 1 505 508 229 31.0 1e-59 MRKLFFADDEPLIVQGLYNLLPWEQFDLQIAGSARNGLEALEKLKEEPVDLLITDIMMPE MTGLELLRRVKLLNPRTKFIILSGYDEFKYVKEGILLGIENYLLKPINIDELEATIKHIL RDWEREEISRFRLDEDWKILRNNILHRWTNGTIDNKEFRERARMLGIPIDHEVYRSAALR IVTENEPAFQFYRLPGLAEECERIGTEELPENCEVIAFPGDGDEITLLFALSGSEVKVLP ALRRMSEWIAGFTGFRVWCAAGHPEELYQGYPASARAVQAWYQAHLMNEQPGVIVDDLAA YAFREEDRPALQEPAMDRFVKLLAEGRRDEIDEFADLFFVRGDSAHPVPRHPYFNAAIQL MLAVKEMEKQPDYSEVFAALFRIQTRSGLALQVKRVAAGMLDSQSDAAREYSPHVAAMLE QVKEHYSRELSLKTLSQKLHMHPNYLGQLFQQEMGTSFSDYVNQYRVERATHLLLHTDRK TAEIAQEVGYWDSSYFYRTFKKYAGVSPTELRSMYTKR >gi|333607359|gb|AFDH01000034.1| GENE 145 147581 - 148969 1559 462 aa, chain - ## HITS:1 COG:BH0792 KEGG:ns NR:ns ## COG: BH0792 COG2972 # Protein_GI_number: 15613355 # Func_class: T Signal transduction mechanisms # Function: Predicted signal transduction protein with a C-terminal ATPase domain # Organism: Bacillus halodurans # 142 460 264 578 587 230 37.0 5e-60 MNPGSQRFYYPSEIPQDNPGWFDSTVNHQWQLTDKRSVLWEARKDSGPVYSYTHILKDTV SLQKYGAIVFDLNTDAIKRLVESKLKDRGAKMLLMTSGGQVIYDSENRYQGQIYPYWLQL QEQKDWVELEEPSKVNVLTVGNTGMTIAGIIPKSRIEQSMHTIRLSLIGITALCIAVSFM FTFTIIRQYSKKIRKIVTHIRRLQEGDLSARIVLTGEDELQDISQNFNYMCDRLETYIDQ VYRSEIKQKNAELVAMQAQINPHFLYNTLESIRMKAITSGARDVGQMIYILAALFRDMIR KQTNVTLAEEMEMNGMYLKLFQYRFENRLEVETYLDKNAANCQVVKLLIQPVVENYLVHG FRPESDSNRIAVTVVREEENIVVRVADNGKGMPPEKLAEIRKRLARKPDSGALGGGSLGL LNVNERIRSHYGSDYGLTVNSGPDQGCEVTLKLPAVQGEMLP >gi|333607359|gb|AFDH01000034.1| GENE 146 148966 - 149334 386 122 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_6241 NR:ns ## KEGG: GYMC10_6241 # Name: not_defined # Def: integral membrane sensor signal transduction histidine kinase # Organism: Geobacillus_Y412MC10 # Pathway: Two-component system [PATH:gym02020] # 1 121 31 151 613 93 38.0 3e-18 MVLLFLGVSILAYQYYEQRSMREQTDRVLKDLDIVSVNLNQLYERMYSAIQQLYTDAAVN EDLTYFLSHEYEDYLKRRLNRYIQSSGTEPKNFDSQLRSFLKDEPSIANILLYSKGERFF IL >gi|333607359|gb|AFDH01000034.1| GENE 147 149607 - 152756 3045 1049 aa, chain + ## HITS:1 COG:lin2123 KEGG:ns NR:ns ## COG: lin2123 COG0383 # Protein_GI_number: 16801189 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-mannosidase # Organism: Listeria innocua # 1 1048 1 1032 1032 1066 51.0 0 MFLTEHKLQSRIRELSELRYRDKHPIPSFLSLEDKRKEINPSLPAPAEDWKTMNVGNTWT GRDLYLWLSAEIHIPQDWSGKRILGRFDFGDTGGGNNSGFESLFYWNGKPYQGVDSNHKE VFLPDDAAGTSRQLLFRLWSGLEGGGQPQDQTHAIRQAEFCWLDEATDDLYFTAQAALDT VRILDANAPERTALLHALNQSFKLMDWTEPGSEDFYVSVNAARTELTTRIERMDKRSDVT VTCVGHTHIDVAWLWRLKHTREKCARSFSTVMRLMEMFPDYTFLQTQPQLYEYVKEDYPE LYEAIKERAAEGRWEAGGGMWLEADCNLTSGESLVRQLLIGTRFLADEFGTECKYLWLPD VFGYSWSLPQILKKSGIHTFMTTKISWNQYNRMPFDTFHWRGIDGSEVLTHFITTPEPWS GPDSWFYTYNGQIIPKTVKGIWDGYRDKEMNQELLLSYGYGDGGGGVNRDMLEMRRRLNS LPGLPNVETGRADAYFERLQETAADTDAYMHTWDGELYLEYHRGTYTSQAYNKRMNRKLE LAYREAEWLNAMQSVLHNDWSLYKGKELTEGWKIILRNQFHDIIPGSSIREVYEDSVIEY EEAEAIGRAVDTQAVEAIAAGKDPSGASAYTVWNSSPWAVTELVTIAAPQQGVSGQWLDL QGSVLQAQLHEEVWTVEVKNIPPMGYTTVKFAGGSGQAESPSPFAWNHSGIETPFYVLEW NAQGQLTRIYDKNQRREVLAPGAKGNVLQLFEDKPLAHEAWDIDLFYQENMQEIRDFKGA ELVEEGPLRAVIRFNWVYRNSSISQDLVVYGSHPRIDFVTEADWHEQKQLLKAAFPVDIR TTEATFDIQFGNVKRPNHWNTSWDWARFETVGHQWADLSDRGYGVSLLNDCKYGYDIKGN VMRLTLIKCATHPDTHADQGHHAFTYSLLPHRGDWLQGQTVKEAWMLNCPLRASAGTAEV PSRSMFTLSGDTAMISAVKKAEDSGKVIVRVHDYSGSRNALELTSDFRIASWRETNLMEK PEGPVVHDGTISFVLQPYEIKTFEIELEA >gi|333607359|gb|AFDH01000034.1| GENE 148 152861 - 153640 674 259 aa, chain - ## HITS:1 COG:lin2527 KEGG:ns NR:ns ## COG: lin2527 COG0627 # Protein_GI_number: 16801589 # Func_class: R General function prediction only # Function: Predicted esterase # Organism: Listeria innocua # 1 254 1 252 252 233 47.0 2e-61 MAFIQCDFYSEVLGMSTSIQVILPQQTTSQIGLEGSAGGRRHPTLYLLHGLSDDDSIWMR RTAIERYAAPLGLAVVMPNAARSFYTDMENGYDYWTFLSEELPQVCRSFFPLSDRREDNF VAGLSMGGYGAFKWALKKPDQFAAAASLSGVTQVKEIETRFPKDFRLVFGNNQELLGASD LFALARHAAEKKTELPALYQCCGTDDFLYEENIAFRDYVQSLNIPLLYEEEEGRIHDWSY WDQQISRVLEWLPLKRQTE >gi|333607359|gb|AFDH01000034.1| GENE 149 153970 - 154998 860 342 aa, chain + ## HITS:1 COG:BH3481 KEGG:ns NR:ns ## COG: BH3481 COG1135 # Protein_GI_number: 15616043 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, ATPase component # Organism: Bacillus halodurans # 1 336 1 334 338 345 53.0 1e-94 MIEIRKLRKQYGSGSRITHALQEINLTIDKGEIYGIIGHSGAGKSTLLRTINLLERPTEG SVVVDGVDLTKLSTKKLQDQRRRIGMIFQHFNLLSSATVEENIAFPLRLAGTAKSEARRR VAELLALVGLTEHGKKYPSQLSGGQKQRVGIARALATNPHVLLCDEATSALDPQTTNSIL NLLLDINRKLKITIVLITHEMQVIRSICDRVAVIHEGQIVEHGPVAEVFLKPRHDVTRQF IEQVADSVEIDKPDTAGVPAQDGTVLKITFLGETTYEPILSRTVQQTGVTFSILQGTISR MKNTPYGQLVVRLQGPRDAAENTIRLLREHGLDVEVYSNGLV >gi|333607359|gb|AFDH01000034.1| GENE 150 154985 - 155644 964 219 aa, chain + ## HITS:1 COG:PA5504 KEGG:ns NR:ns ## COG: PA5504 COG2011 # Protein_GI_number: 15600697 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, permease component # Organism: Pseudomonas aeruginosa # 1 219 7 225 225 198 64.0 5e-51 MDWSKIDWSEIGTATNDTMMMLGLSALFTFVIGLPIGVLLYLTSKGSLLENRTFNIVISF IVNVLRSFPFIILMIAAIPLTKLLVGTSIGVKGTIPPLVIAAAPFFARLVETALREVDRG IIEAAQSMGAGRFQIVRRVLLPEALPGLIAGITITTVTLVSYTAMSGMVGGGGLGDLAIR YGYQRFQTEVMIATVVILLILVQILQMIGDRFVLYFTRK >gi|333607359|gb|AFDH01000034.1| GENE 151 155680 - 156531 1196 283 aa, chain + ## HITS:1 COG:PA5505 KEGG:ns NR:ns ## COG: PA5505 COG1464 # Protein_GI_number: 15600698 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface antigen # Organism: Pseudomonas aeruginosa # 40 283 17 260 260 282 63.0 6e-76 MKKRSLIVLFLIVAMTALAACGKQKAEPSATTTPASGAGTGEKAAVTLKIGATAVPQAEI LESVKDKLKAEGVNLDIKVFTDYVLPNTQLNEKQLDANFFQHLPYLEEFNKSKGSKLVSV GNVHIEPFGGYSRKVKALGELKDGATIAIPNDPSNGARALVLLEKNGLIKLKEGVGIAGT VKDIVENKKNFKIKELEAAMLPRVLDEVDLALINTNYALEAKLVPAKDALFVEDKDSPYA NIIAAREDNAKSEAVQKLIKALQTPEVKKFIEDKYQGSVLPAF >gi|333607359|gb|AFDH01000034.1| GENE 152 156608 - 157486 1156 292 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_0342 NR:ns ## KEGG: Pjdr2_0342 # Name: not_defined # Def: xylose isomerase domain protein TIM barrel # Organism: Paenibacillus # Pathway: not_defined # 4 292 8 298 298 402 69.0 1e-110 MSIRVPNPIGVIVDSFGLPVREGLQKAKEVGADGVQIYAVKGEMYPDNLTAAQRKELKAY IDSLGLQVSALVGDFGGHGFQVRAENKEKIEKSKRVLDLALELGTNIVTTHIGIVPSEKD DVYEAMQEACEELGQYAKSVDAYFAIETGPEPAAHLKSFLDTLSTNGVSVNFDPANMIMV TGDDPVQGVYTLKDYIVHTHVKDGLRHKEFDPRILYGAVGFEPMAHERIADMLREGELFE ELPLGEGKVDFDRYFQALQEIGYQGYLTIEREVGDDPAEDIRKAVEFIKAYR >gi|333607359|gb|AFDH01000034.1| GENE 153 157516 - 158577 1090 353 aa, chain - ## HITS:1 COG:BH2165 KEGG:ns NR:ns ## COG: BH2165 COG0673 # Protein_GI_number: 15614728 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Bacillus halodurans # 3 351 5 347 348 250 38.0 3e-66 MSKLKIGVIGAGSISELHFGAYAKNAQVEIHAVCDLNEERAKEKAKQYGALKTFTDYKQL LADPEIDAVSICTWNNTHAEISKAAVEAGKHVLVEKPLCKTVEEAHAVQEAVRKSGKVLQ VGFVRRFGTNTNVAKRFIDSGELGSIYYAKATVLRRLGNPGGWFSDVERSGGGPVIDIGV HVIDLCWYLMGKPKVKSVSAVTYDKLGNRSHIENLNFYKAADYDAAKNTVEDMASALIRF ENGAALSVEASFTLHAKKDEISVKLFGDQGGAEIEPELMLVTEKHNTILNATPQIDHLTF DFEAGFRREIEHFVDCCLGKHETISPVEDGLELMKILCGIYESSAAGKEIQVN >gi|333607359|gb|AFDH01000034.1| GENE 154 158790 - 160349 1524 519 aa, chain - ## HITS:1 COG:BS_gntK KEGG:ns NR:ns ## COG: BS_gntK COG1070 # Protein_GI_number: 16081058 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar (pentulose and hexulose) kinases # Organism: Bacillus subtilis # 1 514 1 513 513 702 63.0 0 MTRYMIGVDIGTTSTKAVLFEENGKVVAKAGDGYPLYTPTSSTAEQDPDEIFQAVLKSVR GVMDRARVLPGEVLFVSFSSAMHSVLPVDTEGKPLMRCMTWADNRSAEWSGRLKKDLGGH ELYLRTGTPVHPMSPLTKLMWLRHDHPEIFGKTAKFISIKEYVFAKLFGTYLVDHSVASS TGLFNLQALDWDAQALELAGITPDRLSRPVPTTHIVEGLSASYAAEMGLAPSTPFVVGAS DGVLSNLGVNAIEPGVVAATIGTSGAIRTVVDRPVTDPKGRIFCYALTESYWVIGGPVNN GGMLFRWVRDELAASEVEAAKRLGIDSYDLLTQIARQVRPGSDGLLFHPYLSGERAPLWN PDARGSFFGLTLHHKKEHMIRAVLEGVIFNLYTVLLAMEEKIGRPARIHATGGFARSALW RQMMADIFDQEVIIPESIESSCLGAAVLGLYATGRADSFGVVSGMIGATHKHEPDKANAR IYHKLLPIFIGLSRKLEDEYSAIAAFQQEVFKDKNEPVN >gi|333607359|gb|AFDH01000034.1| GENE 155 160431 - 161792 1609 453 aa, chain - ## HITS:1 COG:PA2322 KEGG:ns NR:ns ## COG: PA2322 COG2610 # Protein_GI_number: 15597518 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism # Function: H+/gluconate symporter and related permeases # Organism: Pseudomonas aeruginosa # 4 453 1 450 450 421 55.0 1e-117 MNSIFGLSHSVTLLVWTLISIVFLVVFIAKFKWNPFVTLIISALMLGLLSGMKAQDVIKA VTGGLGGTLGTIAIVIALGTMLGKMMAESGGAEKIATTLVDRFGEKRVHWAMMVVGFIVG IPVFFEVGLILLIPIVFTVARKTKMPLLQIGIPILAGLSTVHGLVPPHPAPMIAIDAYKA DLGKTILYSLLIGLPTAIIAGPLFGKFIGKRIKAEPPAKLAEQFAVNENRNLPGFGITLF TILLPVILMLIGSVANIVDPKSTSSLTVFCEFIGHEIIALLIAVVFSFFSLGFARGFKKE DISRFTSECLAPTATIILIIGGGGAFKQVLISSGVGAAIAEFATQANVNVILFAWLVAAL IRVATGSATVAMTTAAGIVAPVLAQTPGANLELVVLATGAGSIVLSHVNDAGFWMVKEFF NLSVPQTLKSWTVMETLLSVIGLAFIMMLSVII >gi|333607359|gb|AFDH01000034.1| GENE 156 161944 - 162618 565 224 aa, chain - ## HITS:1 COG:BS_gntR KEGG:ns NR:ns ## COG: BS_gntR COG1802 # Protein_GI_number: 16081057 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 3 220 9 226 243 171 38.0 1e-42 MRYPSAWLRGVSLGESIASELRLQIINGSIKPGEVISENRIASDFGTSRSPVREALKALS IEGLIRLERMGAVVLGLSQTDVQELYDVRFIIESFVQDRLAQANQASLIGKLNQIIDRME LAVKHGDPEDFAFQDITFHETIIEAARHKRVLHLWTSIRQIVITVLLITTDEIFSQGEEK LLDVIEKHRAIVRGLETHDPAVIGQVVRNYFADSRQTLENSLPS >gi|333607359|gb|AFDH01000034.1| GENE 157 162803 - 163705 996 300 aa, chain - ## HITS:1 COG:BH2674 KEGG:ns NR:ns ## COG: BH2674 COG1023 # Protein_GI_number: 15615237 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted 6-phosphogluconate dehydrogenase # Organism: Bacillus halodurans # 1 298 1 298 298 375 62.0 1e-104 MRIGMVGLGKMGYNLVQNLLRHGHEAVVFDKDPAPGKRLAGLGAVSSENLEELVANLPAP RTVWMMVPAGKIVDSVIDSLLPLLQAGDVLIDGGNSHYKESVERSEKLAAHGIHYMDVGT SGGTEGAEHGGCFMIGGNKEAFEKIEPLFRDMAVDKGYLYGGKSGSGHFLKMVHNGIEYG MMQAIAEGFEVLDKSGFDFDYEKVAEVWSNGSVIRGWLMELAGQAFSKDPKLEGIRGVMQ SSGEGKWTVETALDLGANAPVIAMSLFMRYRSLETDTFHGKVVAALRNEFGGHAVVRSGD >gi|333607359|gb|AFDH01000034.1| GENE 158 163837 - 163968 161 43 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MDQLENTQTALKNTLKMAKTKAVGSKQGVLQSGMMNNKELFSI >gi|333607359|gb|AFDH01000034.1| GENE 159 164149 - 164448 303 99 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|167463277|ref|ZP_02328366.1| ## NR: gi|167463277|ref|ZP_02328366.1| hypothetical protein Plarl_12071 [Paenibacillus larvae subsp. larvae BRL-230010] # 1 99 1 99 99 120 60.0 2e-26 MSLWKNVRFIERDFWFQKMLNDTEALHSWQINDLLGETNAQWDDLTFKFFDDGSVTIIDN DTDTRVSPQELKGAALDFYIRKRIEFIRVSLQEKILMYA >gi|333607359|gb|AFDH01000034.1| GENE 160 164616 - 165185 434 189 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164512|ref|YP_001467500.1| 50S ribosomal protein L24 (BL23; 12 kDa DNA-binding protein; HPB12) [Campylobacter concisus 13826] # 5 183 3 181 185 171 46 2e-41 MELVRCGWVNQDPLYVNYHDHEWGVPQRDDRKLFEMLCLEGAQAGLSWYTVLKKREHYRN VYDGFDAEKIAGYGEDKLAELLQDPGIIRNRLKVNAFVRNAQAFLKIREKTGSFADYIWS FVDGQPVQNHWSSLHEVPASTPQSDAMSKALKKDGFTFVGSTICYAYMQASGLVNDHLTT CMCHPSNPK >gi|333607359|gb|AFDH01000034.1| GENE 161 165220 - 165438 207 72 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_3506 NR:ns ## KEGG: Pjdr2_3506 # Name: not_defined # Def: TatD-related deoxyribonuclease # Organism: Paenibacillus # Pathway: not_defined # 1 66 201 266 266 79 57.0 4e-14 MAARYPLELMMAETDGPWPFEGTYDGRMTHPLMVADVVRHIAGIKSVAVEEAAAQMYGNT CTFYRLQPQASG >gi|333607359|gb|AFDH01000034.1| GENE 162 165501 - 166127 432 208 aa, chain - ## HITS:1 COG:HI1664 KEGG:ns NR:ns ## COG: HI1664 COG0084 # Protein_GI_number: 16273551 # Func_class: L Replication, recombination and repair # Function: Mg-dependent DNase # Organism: Haemophilus influenzae # 39 204 12 169 259 122 42.0 3e-28 MNKTMSESIKEPMNEMKRDELGAGGDRKANGPEKLRYIDAHIHLEQYGEQERSLIFQDIA DGIPVSMLLAVSMNLPSCQRTRELYRRYPHIVRPAYGFHPEQPLPSEDELAELLAWMEQT VHEAAAVGEVGLPYYMRTEVEQAGQAFYIQPYIDLLERFIAFAAKHNKPVVLHAVYEDAD LVLDLLERYQIEHAHFHWFKGSEKQSNV >gi|333607359|gb|AFDH01000034.1| GENE 163 166210 - 166977 263 255 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|225088774|ref|YP_002660041.1| ribosomal protein S16 [gamma proteobacterium NOR5-3] # 4 221 12 240 312 105 30 1e-21 MKKLELKEISKSFSTGGSDTKILNGINLHVNEGEFVSLIGPSGSGKTTLFHLIGGLIRPS SGQIVMEGSDVTGRKGLVSYMPQQASLFPWRNVEENVILARETAGLPKAESLELAREWLA KVGLQGYEKEHPHVLSGGMQQRVSFLRALLSPQELMCLDEPFGALDALTREEMQHWLLKI WEQNKRSVLFITHSLEEALLLSDRIYLLSDKPTRIEREVIVPFERPRALTITEDPAFISM KRELINLMKSVGSGS >gi|333607359|gb|AFDH01000034.1| GENE 164 166991 - 167752 794 253 aa, chain - ## HITS:1 COG:mll1758 KEGG:ns NR:ns ## COG: mll1758 COG0600 # Protein_GI_number: 13471705 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type nitrate/sulfonate/bicarbonate transport system, permease component # Organism: Mesorhizobium loti # 18 249 29 260 273 155 38.0 7e-38 MIRSLWKKGWPPLLTAILLLLLWQLGVTWAGTPAWRLPAPLQIVEEGIRQAPLLGKHVSF TVSITLLGFAIGSALGLLIACLLHVIPGMKAAFYPLLVLSQNVPTIALAPLLMIWFGFGL LPKLIVITLVCFFPVTVAALGGLSNPDPGMHRYLEMIGARRSQLFWKLELPYALPSVFSG LKISATYSVMGGVIAEWLGSDKGIGVFMLLAKSSFRTDRVFVAIFLIVVLSLLLFGAIVL LEKWTVRWKPDKH >gi|333607359|gb|AFDH01000034.1| GENE 165 167749 - 168042 447 97 aa, chain - ## HITS:1 COG:SA1133 KEGG:ns NR:ns ## COG: SA1133 COG0011 # Protein_GI_number: 15926874 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 95 1 95 97 100 53.0 5e-22 MANALVSIQIIPKTKNGEDVIPYVDRAIEVIQQSGVKHEVHPLETTMEGDLNELLDVIRK MNEAMIEFGSPNVISQVKIYFNPEGASMDKLTEKYRP >gi|333607359|gb|AFDH01000034.1| GENE 166 168132 - 169169 1176 345 aa, chain - ## HITS:1 COG:TM0484 KEGG:ns NR:ns ## COG: TM0484 COG0715 # Protein_GI_number: 15643250 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components # Organism: Thermotoga maritima # 47 341 21 316 316 324 54.0 1e-88 MKRVIRTTALAAAFAVALAGCGKSGGNEGAQSSPEAAQTPAAVQKTDIKVVLDWSPNTNH TGLYVAKAKGYFAEKGLNVDIIQPGAGGADAMVASGAADFGVSYQEGITQARTQSVPIVS IAAIIQHNTSGFASPAAKNIKKPKDFEGKTYGGWGSPAENAMIDSLMQTDKADPSKVKIV NMGDADFFTAVKRDIDFAWIYYGWTGIESELRKEPLNMVYLTDYSKQLDYYTPVLATSEK VIKEKPELVKSFLEAASKGYQFAIDKPEEAAGVLSEAVPELDKNLVLASQKWLSPKYKDD APRWGEQKKEVWENYAKWMLDHKLLEKSLEADKAFTNEFLPASGK >gi|333607359|gb|AFDH01000034.1| GENE 167 169425 - 170273 767 282 aa, chain - ## HITS:1 COG:CAC2424 KEGG:ns NR:ns ## COG: CAC2424 COG4667 # Protein_GI_number: 15895690 # Func_class: R General function prediction only # Function: Predicted esterase of the alpha-beta hydrolase superfamily # Organism: Clostridium acetobutylicum # 1 282 1 281 283 319 54.0 3e-87 MASLGLVLEGGGMRGVYTAGVLEYLMEKDWYVPYVIGVSAGACNAASYLSRQPGRNKKVT IGFITDRRYISYRNLIREKSIFGMDFIFNEIPNNLVPFDFQTFYGESHELVIGTTDALSG EAVFFRKNEAPEMSLSLIRASSSLPFVSQPVLYQERTLFDGGITAPIPIHQSMKDGNERN IVVLTRPKGYRKKPFKQQWLAQRFYPSYPGLVRAMVERSLVYNRTLDEIERLERDGKVIV IRPSAPFKVGRMEKDASRLEALHDLGYKDASEAKEKLREWLS >gi|333607359|gb|AFDH01000034.1| GENE 168 170443 - 171330 737 295 aa, chain - ## HITS:1 COG:BS_ytgD KEGG:ns NR:ns ## COG: BS_ytgD COG1108 # Protein_GI_number: 16080126 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Mn2+/Zn2+ transport systems, permease components # Organism: Bacillus subtilis # 4 292 5 293 295 258 55.0 7e-69 MISAWIILTGVLVACACSLVGCFLVLRNMAMIGDAISHSVLPGIVIAFLISSSRDSFVMM LGASAVGLLTVFLIQFFKQSGVQADASIGVVFTALFAVGVVLVSLYAGHIDLDLDCVLYG EIAYVPWDTLTIAGIAAGPKAVWAVGLTLLLSLLLIGMFFKQFKLCSFDPAMAAALGIPV ALFHYLLMGLVSMTTVASFESVGAILVVGMLVVPPATAYLLTERLSLMIPLSMGIGAASA VLGYGLAYLLDASIAGCIICAAGGLFVLAFLFSPGQGVVVRKWSRTRLSDNRKPA >gi|333607359|gb|AFDH01000034.1| GENE 169 171323 - 172273 1119 316 aa, chain - ## HITS:1 COG:BS_ytgC KEGG:ns NR:ns ## COG: BS_ytgC COG1108 # Protein_GI_number: 16080127 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Mn2+/Zn2+ transport systems, permease components # Organism: Bacillus subtilis # 4 300 6 301 435 292 53.0 5e-79 MLNWLEALKDPNTQWILYGSSLLGLSGGVLGSFAYLRKQSLMGDALSHAALPGVCAAFMV TGSKSILGFLAGAAISGLLATLSIGWMTRHSKIKQDTALGIVLSVFFGFGIVLLTQIQHS ASGNQSGLDKFLFGQAASMVMKDVYTMAGVSVLLLLVCSLFYKELKLTSFDTGFAKGIGY PTALLDQFVLLLILVAVVTGIQAVGVVLMAALLITPAVAARYWTEKLGTMVVLSGLFGAI SGALGTLFSTIGSNMPTGPLSVLAATTWFLVSLVFGTRKGLMPKLLLKWSVYRSVQKAKL PYGGKGAQREGVSVGD >gi|333607359|gb|AFDH01000034.1| GENE 170 172301 - 173068 178 255 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 21 211 10 205 223 73 31 1e-11 MQIQHLAQENRQKPPLLIEEMTVAYRKQPVLRQVTFAAPEGSLVGIIGPNGAGKSTLIKA ALGLIPRVEGRVSIYGKPYREQRKRVGYVPQRESVDWDFPTNALDVVTMGTYGRLGWFRR PGGAERKLALDCLEKVGMADFASRQISQLSGGQQQRVFLARALAQNADLYFMDEPFVGVD AATERAIITLLEELKNQGKTVLVVHHDLSTVEEYFDTVMLLNVSLIAAGPVSEVFNRNNL QKTYGGRLALLDRRL >gi|333607359|gb|AFDH01000034.1| GENE 171 173090 - 174013 912 307 aa, chain - ## HITS:1 COG:BS_ytgA KEGG:ns NR:ns ## COG: BS_ytgA COG0803 # Protein_GI_number: 16080129 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface adhesin # Organism: Bacillus subtilis # 1 307 6 306 306 302 50.0 5e-82 MILIVGSVMALSACSPKPSAVAGDKAGDAGKVRITTTIGMIADIAREIGGEHVEVTSLMK SGVDPHLYKASQGDISKLDKADIIFYNGLHLEGKMTEILEQMGGKKPTVAVSDPIDRKEL RSGDDAGTQYDPHIWFNVKHWMTASEKVRDELIRFDSAHEQDYRSKSDAYLAKLKELDTY TRSEIATIPEGARVLVTAHDAFGYFGDAYGIKVMGLQGMSTASEYGSKDVTDLRDFLVAN KIKAVFIESSVPQKAIDAVIEGAKQKGHEVKIGGTLYSDAMGEEGTNEGTYIGMVRHNVD TIVKALK >gi|333607359|gb|AFDH01000034.1| GENE 172 174367 - 174504 114 45 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MPFNKSTKIDDKQNKSRLKSEAVTLNSRKASEYAPNLNEINKNES >gi|333607359|gb|AFDH01000034.1| GENE 173 174738 - 175055 494 105 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|167463268|ref|ZP_02328357.1| ## NR: gi|167463268|ref|ZP_02328357.1| hypothetical protein Plarl_12026 [Paenibacillus larvae subsp. larvae BRL-230010] hypothetical protein PL1_0419 [Paenibacillus larvae subsp. larvae B-3650] hypothetical protein PL1_0419 [Paenibacillus larvae subsp. larvae B-3650] # 1 105 1 104 104 76 62.0 6e-13 MVESQQHQQFIRHAVEAADAAILAAQEAEHELQGAITQADPNAIQRAQAKLGSAKRQVAE AAAQIRSFDGDRYGQQLQQTIEQLQQAKQDLEVSEDHYHTPKQVR >gi|333607359|gb|AFDH01000034.1| GENE 174 175178 - 175807 650 209 aa, chain + ## HITS:1 COG:BH1275 KEGG:ns NR:ns ## COG: BH1275 COG0572 # Protein_GI_number: 15613838 # Func_class: F Nucleotide transport and metabolism # Function: Uridine kinase # Organism: Bacillus halodurans # 2 195 6 199 211 222 54.0 4e-58 MLVIGIAGGTGSGKSTVARSIIDELGTKNVTLICQDNYYADRSELSMDERAKINYDHPNA FENELLLKHLGELRKGREIQVPIYDFTQHARSSETLHIQGTPIIVIEGIHVLTDEHLRKA LDIKVFVDTDPDVRILRRIMRDTNERGRSLESVVDQYITTVKPMHDAFIEPSKKYADIII PEGGENEIGIRLLTTLTESYMDTLLTDLN >gi|333607359|gb|AFDH01000034.1| GENE 175 176050 - 177246 1326 398 aa, chain - ## HITS:1 COG:BH0884 KEGG:ns NR:ns ## COG: BH0884 COG0477 # Protein_GI_number: 15613447 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus halodurans # 7 385 6 387 401 287 43.0 2e-77 MNISSVKTMSPTRRLVLLLLVVIISGLSQGLLLPLLTILLEQTGVSSGVNGFNAAAMYIG SFASMFVVERILFALGYKKILILGIAMETVAILLIPVWGNLTFWFILRFIIGFGNSILHY TTQLWILTSAPPERRGRYISYYGMAYGVGFSIGPAGINLLALGSYAPFLTVAVFYTVVIL LLQRLPDQKVQSEGKESPAQKRYGIAAKIAWFALIPTFLYGYTEAVLNSSFPLYGLRLGL SDTSVSMLLPLVGFGGLILQLPLGMLSDKIGRKPVLLAAAAMGAAAFLAVPFAGSSVWGI GLLLLTAGGMIGSFFSLGLAYAADLLPRELLPSANVIGSILFSIGSVVGPNLGGLGIQYI SLSSLFFLLGSVYVLFVLTGLAVRTRKRGGADAGIGQA >gi|333607359|gb|AFDH01000034.1| GENE 176 177334 - 177882 485 182 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_3899 NR:ns ## KEGG: GYMC10_3899 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 180 1 178 178 126 38.0 4e-28 MARGNTMVPFGYEEEPPAQRGTLLIFETFEDWSEHEIGLVEAIADERKFRKVVLYPQHEE SLKRMGVPCAAAYHKRVKMLEDLLQDKSAERYTVDTWEGKRKKYTPVDTSLRFLTDKYTS PYFVMMNDRYASMFAGYKGFDEWIRKVRLLVWRRFGVPLPGKLLAYGDRLDFIGENGESV EA >gi|333607359|gb|AFDH01000034.1| GENE 177 178146 - 179261 1329 371 aa, chain + ## HITS:1 COG:BH3246 KEGG:ns NR:ns ## COG: BH3246 COG2309 # Protein_GI_number: 15615808 # Func_class: E Amino acid transport and metabolism # Function: Leucyl aminopeptidase (aminopeptidase T) # Organism: Bacillus halodurans # 1 371 1 371 371 496 63.0 1e-140 MRDPRMVTFARNIIRYSVELQPGENILIELIGVKDPELAKCFIEEVYAVGGNPIVELRDP AINRSMMLGATRETLEKKAEIELSRMKEMQAYVAVRAGDNVTETADVPEDRLKLYMSVYS RPVTNQRVNHTKWCVMRYPNGSMAQLANTSTEAFEDFYFQVCNLDYSKMETAMEPLVQLM NRTDKVRLVSPGTDLSFSIKDIPAIKCCGKRNIPDGEVYTAPVLNTVNGIISYNTPTVYS GTSFENVVLKFENGKIVEATSNNSARMNEILDTDEGARYIGEFAIGVNPYILHPMKDTLF DEKIDGSIHFTPGQAYEIADNGNRSSVHWDIVLIQRPEYGGGEIWFDDVLIRKDGRFVIT ELECLNPENLK >gi|333607359|gb|AFDH01000034.1| GENE 178 179869 - 180357 500 162 aa, chain - ## HITS:1 COG:BH3140 KEGG:ns NR:ns ## COG: BH3140 COG0290 # Protein_GI_number: 15615702 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation initiation factor 3 (IF-3) # Organism: Bacillus halodurans # 2 161 24 186 190 101 34.0 6e-22 MLIMNEKIKAAEVELTGLNGENLGVMPREEALKLAKAADADLVCTSLMSSPPPCKLAARG TAKQAAQKDKQAARRQDKPLKVKELRLTVHVEDHDYETKQRQAEKLLASGNAVQLVVRIQ GKEGPKAKELLERLVKDLSAAGTKETNIQVSGKQAAVRVNPS >gi|333607359|gb|AFDH01000034.1| GENE 179 180538 - 182253 1230 571 aa, chain - ## HITS:1 COG:no KEGG:PPE_01722 NR:ns ## KEGG: PPE_01722 # Name: not_defined # Def: ErfK/YbiS/YcfS/YnhG family protein # Organism: P.polymyxa # Pathway: not_defined # 292 516 243 453 474 93 31.0 3e-17 MGGATNRFSHPLEPQLVRVNKNLYISRGDPQYFNKVIRYADKTSPEAHFRMGERAREQGN LPRALFHYQEVMKTYPSPFYSDANRAVHELAKREENDLAGVRQELEAATGSKFNKFLRTF LYALIVINLVLLVVLLSGAGNKQTASAAENGKPSSYESHASQPQERSSFSPEAASLRPEE FSGVKPDERPYLLRLSPGTGNARAEAILREEMELLIGRNPQKSRVIYVIRLTGQDALPGM DGQAVPVKDPAEVKGAFAAAEYAPTLRKTAEITYLDEGAPRAQVLTRIGAQLIRTALGAY AADHGGKFPASLDELVRDYPGNYLSFVPREAVTGSIRVSPSYDGGGGWVYRPASGDAGSA LTPNLPGASLAGILLPASAAAQANVPFEPVRVTVSKREHRLLLTAGGAVLEARAGIGRPE SPTPDGTFAVQERVIAPAGRTPSVYGAAALGLGAIAVHGTADAASVGAGRSLGCIRVGDA DMQALFALVPKGSAVRIAEASPAAGGLSASEAGPASGAGSAADAASVSGGAGVSAVAGGL DLAAAAEALRPPGAPAVRERAPEGTVFHWLG >gi|333607359|gb|AFDH01000034.1| GENE 180 182452 - 182583 143 43 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MAGRNSKPKNRGPASHPGRLDQFGDKLADGKGPEPKPENVLGE >gi|333607359|gb|AFDH01000034.1| GENE 181 182668 - 183006 427 112 aa, chain - ## HITS:1 COG:no KEGG:Bsph_2713 NR:ns ## KEGG: Bsph_2713 # Name: not_defined # Def: hypothetical protein # Organism: L.sphaericus # Pathway: not_defined # 4 111 17 124 126 141 65.0 9e-33 MSPEKLQKELEPFLIPGEQVQVAYKIIRDGFVFTNKRLILIDKQGVTGSKVEYMSVPYKS IIRFAKESAGTFDLDAELKIWLSSTHEPIVKKFNKSANINDVYAMLSRYVLG >gi|333607359|gb|AFDH01000034.1| GENE 182 183112 - 184188 1063 358 aa, chain - ## HITS:1 COG:no KEGG:BpOF4_18695 NR:ns ## KEGG: BpOF4_18695 # Name: not_defined # Def: hypothetical protein # Organism: B.pseudofirmus # Pathway: not_defined # 1 347 1 351 351 391 54.0 1e-107 MKFEVKFISFFVIREEGTGKAYRHFQTLDGDAYEGSALEQFLGGEFARLAKRKVERNPQS EQVPTKIGRFITEPGCGLETNPNYNMFARLRSASSRDDFLKESDELARAYIQTSSVRSGA LITASAKLPQYFDEPFVFVMKCDFEPKIARITDESSLLHEVEMAINAKNMKAIQYPYMPE VGMLEDWELKIHQPSHAKYFEDLLKFVEYEKSMPELLNHQVVNLVQQHIEQTLEAHPEQK EAEERDLELWAASEKRELQEKWAPELVMEAANFLVEQQPDLGMTFKLDHLTVKGKLADYG RKVHFAKFGDQYVVLLSGSSLHFEKGVSPVELLQPEDIQSVLARLEREAAEDAGGGDF >gi|333607359|gb|AFDH01000034.1| GENE 183 184383 - 184634 157 83 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MIYGTKLLEMDIELFAAALSQTEVYIWGMDHNDVYVQIGRGFIEKYNHDQVKIRSSLNSC TMIYSREKCEFSAKIESAEEQPK >gi|333607359|gb|AFDH01000034.1| GENE 184 184894 - 186297 1546 467 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_3333 NR:ns ## KEGG: Pjdr2_3333 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 1 467 1 470 470 522 65.0 1e-146 MSVELVGLHVVYVCFIALIIGFMLFRKDTTPVCLIGIFLLGLAATGSLPQSVGGIFTSLI YAMKELLPTILVISVIVGMSQVLSLSGVSDTMISPAAKLIRSPGAAFWIIGIVMMTVSWF FWPSPAVALIGAVLLPAAVRAGLPAIGAAVAMNLFGHGIALSGDYVIQAAPKLTADAAGL SVGSVMEASIPLVAVMGAVTTAAAFWFLRRDLRSGALKPESAIKPPAPVIGGASSGGKLL SGRKRLVLAVAIPLLFAADIAAMFRLNLQGGEATALIGGTAALILLLVSLTAHRRGGFGK TTAYLVDGFHFGFKVFGPVIPIAAFFYLGDAALTELYGHVLPAASHGIVNDLGLALAQTV PVHPAASAVTLTAVGAITGLDGSGFSGISLAGSVAHLFSSALGAGAATLTALGQVAAIWV GGGTLIPWALIPAAAICGVDPFELARRNLKPVMIGLAVTTVVAMFLI >gi|333607359|gb|AFDH01000034.1| GENE 185 186545 - 186925 355 126 aa, chain - ## HITS:1 COG:BS_yvbA KEGG:ns NR:ns ## COG: BS_yvbA COG0640 # Protein_GI_number: 16080432 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus subtilis # 18 84 3 68 90 67 44.0 5e-12 MSGTTERTTMEYFEQCTNLFRTLGDPARQQIILLLGKHGPMNVKSITEHSHLSRPAISHH LKLLKQAEIVTIRQQGTEKYYALDAGSAMRLMKDLIAAFEKECPPEAAGGEQGEGLPCEA GAAAER >gi|333607359|gb|AFDH01000034.1| GENE 186 186980 - 187576 473 198 aa, chain - ## HITS:1 COG:PA0853 KEGG:ns NR:ns ## COG: PA0853 COG2249 # Protein_GI_number: 15596050 # Func_class: R General function prediction only # Function: Putative NADPH-quinone reductase (modulator of drug activity B) # Organism: Pseudomonas aeruginosa # 8 197 18 207 207 169 41.0 4e-42 MTTQPPSRVLIIQGHPDRESYCTALAESYRKGATAAGAEIRFVQISDLDFNPNLAYGYRK RTELEPDLLGIQESIRWADHVVFVYPTWWWTMPALLKGMIDRVFLPGFAFKYKSKDSLIW EKLLKGKSARLIVTMDTPVWYYQTIGGIPGHKAMKKGILEFSGFKPVRVTMLGSLKLSTA DKRKSWLNKAENLGRKLI >gi|333607359|gb|AFDH01000034.1| GENE 187 187723 - 188202 320 159 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIKKIGLVVLLAIAAGVILYNWNEYREKSIADVLPLHAGELTWMGFSKNRPTQDDKLYEW GTKDKEPMEELLAFLSQYRVKRKHLGYEALSQEVTALRNSESAFEFELTRDKAETVLIYA NHNTVYVLVDRLYEIKNGPINREWIDAFNEKYRKIYGNS >gi|333607359|gb|AFDH01000034.1| GENE 188 188478 - 188993 176 171 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVVVSATAYAATDGKVISIIKNQMNKIFFASGSSIMLQINDDGGSVGTDGIKGEWLVKES SFGRLVLTVNGEDMNITDTLSEKGYFYYDYRDDAGILHRVYIVKNAGGTKDYAERWYSQY EWLPELGVGGGSRGTSGPLSRAIMLAEVGVKEGTGDLDTMLQQELDKYWAR >gi|333607359|gb|AFDH01000034.1| GENE 189 189139 - 189651 152 170 aa, chain - ## HITS:1 COG:BH3362 KEGG:ns NR:ns ## COG: BH3362 COG1595 # Protein_GI_number: 15615924 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog # Organism: Bacillus halodurans # 24 154 32 170 183 78 33.0 8e-15 MEKDPLLRTDKELGEIYIRNVDMVYRLCYIYLKNAADAEDAVQSIFLKLVQPDKSFSGRD HERAWLIVATKNHCKDILKSFWNTRHVHLEVLPELPCRDDRAQSGEVLEQLLSLPDKYKI VLYLYYFEDYSVKEISNLLGHKESTIQTQLATGRKRLKFHLAGGQYEQSY >gi|333607359|gb|AFDH01000034.1| GENE 190 190119 - 190790 832 223 aa, chain - ## HITS:1 COG:BH3850 KEGG:ns NR:ns ## COG: BH3850 COG0692 # Protein_GI_number: 15616412 # Func_class: L Replication, recombination and repair # Function: Uracil DNA glycosylase # Organism: Bacillus halodurans # 1 222 1 222 224 326 67.0 2e-89 MTILKNDWAELLSEEFEKPYYLKLREFLKQEYAERTIYPEMHDIFNALHYTAFKDVKAVI LGQDPYHGPGQAHGLSFSVKPGVPAPPSLKNMFKEMKEDIGCPVPKTGYLKHWADQGVLL LNTVLTVRAGEANSHKGKGWELFTDKVIETLNRKETPVIFILWGSHAQSKTQLIDLNRHG VIKAPHPSPLSAHRGFFGSKPYSKANAWLREQGIEPIDWCLPE >gi|333607359|gb|AFDH01000034.1| GENE 191 190807 - 193215 2260 802 aa, chain - ## HITS:1 COG:CAC3567 KEGG:ns NR:ns ## COG: CAC3567 COG0550 # Protein_GI_number: 15896801 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Clostridium acetobutylicum # 2 613 3 600 709 488 43.0 1e-137 MKTLVIAEKPDMGRTIAAVIEPKAANKRTYIEGSDYIITWAIGHLIELAEPDKYDEKYKK WRFEHLPIIPDEFKLLPNPRTKDQLKVIKEVAKQCDKIVNACDAGREGQHIFSLIQRHLK LKQPVKRLWISDLTAETIRNGFQQLKDGSDFENLTRAARARSEADWIIGMNGSRAFTTKH NVLLSVGRVQTPVLALIYDRQKLIEDFSSLKFYEVEAFFAQEQTDYRGLWQGERITDPAK AEGIAAKVKGKPARIASYEVKDTKEYPFKLYDLTLLQRESNAKLGFSAKKTLDVAQALYE KHKVISYPRTNSNYVTEQNIPDMHKTLSALQGTAYDEWVRQANRNLVHKNNKAICNPAKV EDHHAILPTGKRANGLSADEQKVYDLIVRRFLSQFYPAAEYKVHTVLTEVEKETFKTTVK ELLQLGWKVLYPESKKDGKRAKTKDDKGKEEEEAEEEETSEPFSLNASLGAHCRDAAAKE KETQPPKAFTEGTLLKAMESAGKQIEDEELRDAMKDSGLGTPATRAATIERLKHVGYVTM QGKRITLTPKGRTAVELIRAAGVELLTSPEMTGQWERRLNEISRGQASDETFMRNVKKFA TLIVDKVRVQNRAARTAFEGDEPAGKAGGRAAAGKTRRSAKASGTDGAAAGTAPKARAAA GSAARESGAPASRASSARSGAAGVTAGQASGRSTRGASAVQGAPAAARPADGPRVVGACP RPGCGGTIFMGKKGYGCSHYKTGCTFVIWKESFGRSLTDAQVKALLEKGKTAKLKLARQG GEEVSARLVLADPSTGRLETEE >gi|333607359|gb|AFDH01000034.1| GENE 192 193513 - 194502 798 329 aa, chain + ## HITS:1 COG:CAC0183 KEGG:ns NR:ns ## COG: CAC0183 COG2971 # Protein_GI_number: 15893476 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted N-acetylglucosamine kinase # Organism: Clostridium acetobutylicum # 9 282 3 279 306 80 24.0 3e-15 MTELTTKTFLLGMDGGGTHTRVLAADLAGNVLAYVEKGGSSIHKDDRARENVQGAILEAV ALSGRTLDQAASLTAGMAGYDSESDLPWVRGLTDVEGLSCPRQLVNDAVVAHSGALLSEP GIMVISGTGSIILAVTDDNRHIRNYDLHHYSASAARFLGYDATYEALAGNLDESDADLIT GMLDHWGLETLESYSELACAGFIPDTKARNKKFGELAPLITGEAVRGSRLARTVCDRAVH QISVGIKLLGSRFNGETVSVAAAGSVVNSPYFKQKLAEKLNVGNRKTYRWQPPAFSPAAG ALLMGYRSLDIPMTEELLDNLRRHPACGC >gi|333607359|gb|AFDH01000034.1| GENE 193 194670 - 195197 464 175 aa, chain - ## HITS:1 COG:BS_resA KEGG:ns NR:ns ## COG: BS_resA COG0526 # Protein_GI_number: 16079372 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Bacillus subtilis # 43 163 44 165 181 113 45.0 2e-25 MTHKLRRGAVLLIAGLIAAALAYTLYHADSEETAVAVRAGAMAPDFTVTGLDGRSVALSD YRGKGVMLNFWASWCGPCTHEMPRMNEAYLEGIPDVEIVAVNVGESRGTANEFAMQGNLA FPVLLDPSGEAARKYRVVGLPATFLIDPDGKIAAVRPGELTSSAEVKKLLQSLSR >gi|333607359|gb|AFDH01000034.1| GENE 194 195213 - 195953 293 246 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 21 219 21 223 311 117 32 5e-25 MAENVLQVSDLHKKIGKQPIIHSVNLRISRGQVLALCGGNGAGKSTILRMIAGITQPTSG VIEVNGRKWKENRTAYAQQIGYMPDDYLFGQGLSAEETLQFWASLRKVSKARVLEALELV GLADVRRKPVSSFSKGMRQRLLFAQALLAKPALLIMDEPTNGLDPYWMDSFVELVRYAKR EGHAVLFSTHQLGVAESAADHVVFLKEGRIAEEGTAESFREAYGPQGLQAAFSKLFGYRT GGDGGI >gi|333607359|gb|AFDH01000034.1| GENE 195 195946 - 196764 845 272 aa, chain - ## HITS:1 COG:BMEII0970 KEGG:ns NR:ns ## COG: BMEII0970 COG1277 # Protein_GI_number: 17989315 # Func_class: R General function prediction only # Function: ABC-type transport system involved in multi-copper enzyme maturation, permease component # Organism: Brucella melitensis # 2 185 3 194 273 63 28.0 5e-10 MNVLTIALREVKVGFRNPWAYSFMALFSLFSLSLLLINAQSFVQGYSSSTSSMLNLILYL LPLMTLLLGSFSLTAEKEEGSWQLLSTYPLATFAFIAGKYTGLTVVMLTIVAFGYGLTGV VGALTGRGLQPATLGLFFAFSTGLVLLFLAIALVLGTFARNRWQALTAGVAVWFFAVIGW PTLLIAVLGQLPYVWIKSALVVLTFLNPAELVRLFVVVKLGGGAALGPEYYEWVRWIGRP EGTLVFIGLCLVWIAVCAGLANWIWERGRSRG >gi|333607359|gb|AFDH01000034.1| GENE 196 196761 - 197330 667 189 aa, chain - ## HITS:1 COG:no KEGG:GY4MC1_1558 NR:ns ## KEGG: GY4MC1_1558 # Name: not_defined # Def: lipoprotein # Organism: Geobacillus_Y4.1MC1 # Pathway: not_defined # 1 164 1 172 172 147 42.0 2e-34 MKRKGLFLLSVLLILTVLSACGKANDQAEPINEETDKCAICNMQIKDDAFAVQLKTKDGK TYKFDDLGCMNEWKGKNAANPIQVQFVRDYNNKEWIKYEDATYVYDPSFKSPMAYGIYSF KDKAEAQKFADSQKKGKVMTAADLGKHTWEQNKSMMNMGGSHDHSVTPEAGGDKDAHGGK AGDQGTHGK >gi|333607359|gb|AFDH01000034.1| GENE 197 197327 - 198691 1387 454 aa, chain - ## HITS:1 COG:PA3393 KEGG:ns NR:ns ## COG: PA3393 COG3420 # Protein_GI_number: 15598589 # Func_class: P Inorganic ion transport and metabolism # Function: Nitrous oxidase accessory protein # Organism: Pseudomonas aeruginosa # 47 418 38 426 428 149 28.0 1e-35 MKLRLIPLWLCVCAAAAAGIWLPHQRAEAAPDAGAARPAALQQLIDRTPSGGLLRLPAGS YEGPAVIARPIVIEGQSGAVVKNKDGSGKPAITVRADDVSLKGLQIEQDGEGASSDMPAV LVQGSGAWLHSLDIRTDAFGILLRDTGHNRIENNSVVRTGSGAAKLSERRNGIDLFNAHD NVISGNQVSSMNDGIYLESSHRNKVEANSVEHSRYGIHCMYTKGTVVRNNIGMYNVTGAM IMGVKEAEVSGNSFTKQSESVNSQGLLFFDVHNSKVTGNKVEGNRVGLYVEQSGSNDFAN NDVLQNFVGVQFLESENNRFTGNRFIGNVIEAEANESESNAFSGNFWEAFRGLDSDGDGS SELSYTLNPFFQRLTGEVPAYQLFFQSPGMQFLESMYTSDREGWTKDVAPMMKPGTGPEQ KPLSGAAGNTTLVFGLLLLLASISTIYYVGVRRI >gi|333607359|gb|AFDH01000034.1| GENE 198 198688 - 199071 411 127 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|304406696|ref|ZP_07388351.1| ## NR: gi|304406696|ref|ZP_07388351.1| hypothetical protein PaecuDRAFT_3027 [Paenibacillus curdlanolyticus YK9] hypothetical protein PaecuDRAFT_3027 [Paenibacillus curdlanolyticus YK9] # 5 122 21 140 145 94 42.0 3e-18 MLKPISRFLLAVLLVFAVTACSPELKGQDPAKVKVDLVTEPSPVKTGEKAVVTAQITGLT TQEGARVQLDVRLADNSGLPELLDAKTSGDGNYSIEKTFDQPGKYAIYVHLYQGVLHITK KKVLDVS >gi|333607359|gb|AFDH01000034.1| GENE 199 199265 - 199612 570 115 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_3652 NR:ns ## KEGG: GYMC10_3652 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 115 1 115 115 99 48.0 4e-20 MFMVYGIALLLAGLLTINSIFSYQSKHIDPSLWQTLWFQCKMIPLVFAANVMIGYGVKFC YKTTGNLTLSLGISKGIEIFICVLMGYIFLKEIPNWKTWVGLGIVVGGFVITKLK >gi|333607359|gb|AFDH01000034.1| GENE 200 199853 - 202288 2565 811 aa, chain - ## HITS:1 COG:lin0222 KEGG:ns NR:ns ## COG: lin0222 COG1501 # Protein_GI_number: 16799299 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-glucosidases, family 31 of glycosyl hydrolases # Organism: Listeria innocua # 88 718 86 713 763 686 49.0 0 MQTSETIHPDKSIDTVLEVAPKAPGRATHVTEADDSYLIHGQHANLLLTFLESGLFRIKL FHGNKPEFKSATVAVLAESFQPVKADRTESPEAFEFRTSALRLIVEKETFALTVQTPEGE LLMKQPTLSWTTRGSLSGSYVMGTDSHFYGLGEKTSFLDKRGERYAMWNSDVFAPHVPEI EALYESIPLLIHMHRTGTYGLFLDNPGRTDFDMRTHPDLFTIQCTTGEYDLYFIFGPQPK DVVGRYTKLTGRISMPPKWSLGYHQSRYSYMNQQEVLELARTFRERNIPCDVIHLDIHYM DQYRVFTFDKDRFPDPEGMMAELKKLGMRIVPIVDPGVKKDPKYPIYREGIENGYFCKKL EGELFIGDVWPGKSAFPDFTEDAVGKWWGEKHKFYVDLGITGIWNDMNEPAVFNESKTMD LDVIHGNNGDSKTHEELHNLYGMMMSKATFESLREQLGGERPFVLTRAGYSGIQRYAAVW TGDNRSFWEHMAMAIPMVLNLGLSGIPFTGPDIGGFAHHSTGQLLARWTQMGALFPFCRN HSVIDSVRQEPWSFGEETEAICRTYIELRYRWMPVLYTLFHEASRTGMPILRPLVLEYPR DPQVTNLSDQFLLGSSVLVAPVYRPDTEHRAVYIPEGEWIDYWSGEKHAGPKHILAHAPL HIMPMYIKAGAILAEEPLKQHADEEAASSLTWNIYVSGGSSEGTVYEDDGITYGYEQGAY NVIRMSTEAADGGMKLAWAYEHSGLPNADRSFLIRIKHAGFAPAAVEGLRRLEAGMIGGD RAASGWAYDEAAGEILIRTADTPQQVVHIRA >gi|333607359|gb|AFDH01000034.1| GENE 201 202292 - 203293 1039 333 aa, chain - ## HITS:1 COG:BS_degA KEGG:ns NR:ns ## COG: BS_degA COG1609 # Protein_GI_number: 16078147 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 1 321 14 333 337 165 33.0 1e-40 MSIATVSNVMNGTGRVSGETAKRVLQVIDRHDYAPSTAARFLKERRSQLIGILVPTGERG RLEDNPFYWQLVMAVEAEAREERLHVIVSGVTEEDPLTFVQERQLDGIIAIGITGDSPLL GRIAQLDVPCVYLDCYLAGGENLQVVNMNDRMGGYLGTKHLLSLGHERIAVIAGDIVTSG VYEERWLGYTRALEESGIEADRALLVETPVSLLGGYHSAQQVYMLSPKVTAVFAFSDVAA IGLMKGLQELDVRIPDDLSVMGYDDIDYAGFLTPSLTTIRQDIGTKGKTAIRRILSMIRG SVPAEHSVTLPVELKRRQSTARRLQPNSIQKEE >gi|333607359|gb|AFDH01000034.1| GENE 202 203601 - 204104 425 167 aa, chain - ## HITS:1 COG:MTH1774 KEGG:ns NR:ns ## COG: MTH1774 COG0622 # Protein_GI_number: 15679762 # Func_class: R General function prediction only # Function: Predicted phosphoesterase # Organism: Methanothermobacter thermautotrophicus # 1 161 1 158 172 102 39.0 4e-22 MKIGVLSDTHMRPKAGKLPDAVLKGLEGVDLILHAGDWTSPEIIGWVEKIAPVESVAGNN DGPDIVNRFGYSKLIEAGGLTIGLVHGDRGRGRSTEQRALFTFQDDNPDVIVFGHSHIPY SERIDGLLLFNPGSPWDKRWQPRFSFGLIETDGEKTEARHIFFDSRE >gi|333607359|gb|AFDH01000034.1| GENE 203 204138 - 204698 542 186 aa, chain - ## HITS:1 COG:no KEGG:BSU31040 NR:ns ## KEGG: BSU31040 # Name: yuaD # Def: hypothetical protein # Organism: B.subtilis # Pathway: not_defined # 13 180 11 178 192 193 55.0 4e-48 MKKGNEQQAVMTGLLIADKSGTFITRHLDWAELQFGGLVGDRHFGVTSKADVRQPMYPRG TEIMNRRQISIVSEEECEEIAAALGIERVAPEWLGANMALKGLERLTALPRGTRMLFPSG AGLVCEGDNEPCVHPGKVIAEQMGNPKLAGKFVKAAWNRRGIVASVERPGIVSAGDEVRI LFPDEL >gi|333607359|gb|AFDH01000034.1| GENE 204 204960 - 207152 2014 730 aa, chain + ## HITS:1 COG:CAC1026 KEGG:ns NR:ns ## COG: CAC1026 COG3973 # Protein_GI_number: 15894313 # Func_class: R General function prediction only # Function: Superfamily I DNA and RNA helicases # Organism: Clostridium acetobutylicum # 63 707 79 762 763 345 34.0 1e-94 MDKNQSAYQEEQNRLDAILADVNRRLEELQAVPVYRGQDFTEQALEALRESSRQSLALAS DEPYFGRLDFQPENAAGKSALYIGKFGVDDENGGEPHVIDWRAPVASMFYSYTGGDEKAA YESPDGLVEGLVYLKRNLVIRKQILQRVVDTYDRESDLLSGAGGDEFLLYRLGENKDNKL RDIVSTIQAEQDKIIRSAKNAALIIQGVAGSGKTTVALHRLAFLLYQYRDQVKAENMMIF APNSMFLDYISGVLPELGVGHIRQSTFADWAIELTGLSFALENPADESAVWFALGSKRPP LNDDVSGRWKGSVAFRSFLESCFYGYARTCLPQEPFHPWDGKTLPAQTIGVWYNEEYKHL PPAKRRERVVARIKRWITMELDKVWDAKQKKERKTKSTQRLKAYLKGWPELDALSFYKAV FDPKAGAVWMTEELRGRIPEAVAKDTLASFRRKKVRHEDLPALVFIHASLHGIEGSERFD HVVIDEAQDASPFQIAVLDQYTRQHSFTILGDLSQGIHAYRGTRDWAELTSLFGEGETAY FELERSYRSTMEIIRFANHVLSTGVGAGLLAIPVFRSGERVKVLRVEKEREIAFLREAVE RLLRRNYDTVAVITRTEEDAVRLHAQLGELGLAASRITADQKQYAGGISVVPVYLTKGLE FDAAILTDADPVHYGADAQDAKLLYVGCTRALHDLWVLYDGEPSPLVSVDDPEIVTRDLR GEDSADRRTE >gi|333607359|gb|AFDH01000034.1| GENE 205 207303 - 208151 802 282 aa, chain - ## HITS:1 COG:lin2658 KEGG:ns NR:ns ## COG: lin2658 COG1307 # Protein_GI_number: 16801719 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 3 278 5 276 283 130 31.0 2e-30 MTIKIITDGTSDLPQELARELDITVVPLLVRFGDKEMTSDMSRTLFYELMRQEPKLPQTA SPAPHTFMEEYRKASQSDILVVSVSSNLSSTYHHALMAREQLMEDGYTGRIEVLDSRTAS LGQGLLAVKAAKLAKEGLPFEELVARMKEEIKSHHTYFFLDTLENVIKGGRLDRVRGAVA SVLNIKQIMKASEEGTLEPFEKVRGTQNAIKRLIERVSEKVSETRHDLERCILGIAHSNC EDRARDVRDQLLRLFPFGQVVITEMGPVIGTYAGEGGILISC >gi|333607359|gb|AFDH01000034.1| GENE 206 208167 - 209015 798 282 aa, chain - ## HITS:1 COG:CAC0701 KEGG:ns NR:ns ## COG: CAC0701 COG1307 # Protein_GI_number: 15893989 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 1 281 1 277 279 151 32.0 2e-36 MAPIKIFTDSTNDLNPHYLKENEIGVVPLYVVFGDDSYRDGVDITPEVLYRKVEQSGKLP KTAAPSPADFEKAFRPHIEQGFDIVYIGLSSEVSSTYQNAVLTSDLFPEGRVTVIDSRNL ATGIGILICKAVEAAKQERSAAEIEAMVKSFIPKVSTEFIIDTLDYLHKGGRCTSLQAFF GSLLKIRPVVQVKDGSMILTSKVRGKREKALEQLVDNALAFKHEMDPDVLFVTHSMAQEE AELVRARLLQETGVKRIEITETGCVVSSHCGPQTVGIVFIKS >gi|333607359|gb|AFDH01000034.1| GENE 207 209063 - 209785 617 240 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 239 1 242 245 242 48 1e-62 MLNITNLHKHFGKLNVLNGIDIEIEKGEVVVVIGPSGSGKSTFLRCLNLLEVPTDGEILF EGISITNKKTDINSVRQKMGMVFQQFNLFPHLSVKDNITLAPRKLKKMSVSEANETAADL LRKVGLAEKAGAYPAQLSGGQKQRIAIARALAMSPDVMLFDEPTSALDPEMVGEVLDVMK KLAKDGMTMVVVTHEMGFAREVGDRVVFMDGGVIVEQGRPEEVFSNPQHARTKEFLGKVL >gi|333607359|gb|AFDH01000034.1| GENE 208 209778 - 210467 894 229 aa, chain - ## HITS:1 COG:lin2352_2 KEGG:ns NR:ns ## COG: lin2352_2 COG0765 # Protein_GI_number: 16801415 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Listeria innocua # 4 228 3 215 215 200 50.0 2e-51 MNFSFLNEYGHYFVDGTKVTLLLSVITVILGAIFGTGMSLLRLSGIWPLRWLATAYIEFF RGTPIIIQIFLVYYALPQFIPDFHFPPFPFLEEYGGEFTAAVITLGLNSTAYVAEIMRAG IQSVDKGQMEAARSLGMKPWMAMRLVVIPQAFRTVLPALGNELVVVIKETSIVSVIGLNE LMFNADTVKGSLSLPFEPLIIAAFIYLVITLTLSKLVGMLERRLTKSNA >gi|333607359|gb|AFDH01000034.1| GENE 209 210615 - 211430 1046 271 aa, chain - ## HITS:1 COG:lin2352_1 KEGG:ns NR:ns ## COG: lin2352_1 COG0834 # Protein_GI_number: 16801415 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Listeria innocua # 1 264 1 265 271 169 36.0 5e-42 MKKWGLTLIALVLTMSLIAACGKKTETPKDAAGGAQTTAPAKKLILGTSADYPPYEFHKS TNGKDEIIGFDIMIAKEIAKDMGAELEIKDMKFDGLLPALQSGNVDMILSGMTPTEERKK NVDFSKTYYTAKQMIVVRAEDKDKYKTMESLAGKRIVVQKASIQETVAKEQIKDAKIKTL SKITDIVLELKNKNADAAIIELPVATSHVNRDKSIVIAEATPTVEEAGSAVAFKKGSQDK IDLVNKTIDRLIAEKKIDQFVTEATSQVEAE >gi|333607359|gb|AFDH01000034.1| GENE 210 211757 - 212392 817 211 aa, chain + ## HITS:1 COG:BH2865 KEGG:ns NR:ns ## COG: BH2865 COG1272 # Protein_GI_number: 15615428 # Func_class: R General function prediction only # Function: Predicted membrane protein, hemolysin III homolog # Organism: Bacillus halodurans # 3 209 7 214 215 219 56.0 4e-57 MEYSPREEVANAVSHGIGTLLSVAALVLLVIQATTYGNTWHIVSFSIFGTSLILLYLCST LVHSAPGGKLKDIFEIMDHSAIYVLIAGSYTPFMLVTLRGVLGWTLLGIVWGLALLGIVL KIFFVKRFIVLSTVCYIGMGWLIVLAIKPLAEHLSTNGIIWLVAGGLLYTVGTVFYLWRR IPYHHAIWHSFVIGGSVCHFFAVMQVLPVPA >gi|333607359|gb|AFDH01000034.1| GENE 211 212432 - 213085 610 217 aa, chain - ## HITS:1 COG:BS_ycsK KEGG:ns NR:ns ## COG: BS_ycsK COG2755 # Protein_GI_number: 16077478 # Func_class: E Amino acid transport and metabolism # Function: Lysophospholipase L1 and related esterases # Organism: Bacillus subtilis # 5 202 3 202 213 103 34.0 2e-22 MGRALRYIAFGDSLTVGTGDPTREGFTARYRGMAEAALGRSVVLRSAGTNGATSSELLQY LRNEGDLRRGLATADIVTITAGGNDLIRSAMPYLKSRDTGVLKRSLRKFGGNLRQIVGYT QLPTPNGKSPLVILVGLYNPISMLPEAEFWIKRFNQQMAGLGSRTVRYVDVYPAFKGAES RLISDDLFHPNAEGYKRIAECIAQSVPLASLAGDGGH >gi|333607359|gb|AFDH01000034.1| GENE 212 213156 - 213467 443 103 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_2658 NR:ns ## KEGG: Pjdr2_2658 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 1 90 1 91 106 76 48.0 3e-13 MNKYGSDNWQDHRFTLACKEVERRGQWLDIHLALYPEEGETLPEELHDPSVYVICDLGGA IVQIILLDEGCDCEYQFTPGEKEKIARYLEEHCSAEMDSLLLR >gi|333607359|gb|AFDH01000034.1| GENE 213 213692 - 214864 1346 390 aa, chain + ## HITS:1 COG:FN1186 KEGG:ns NR:ns ## COG: FN1186 COG1473 # Protein_GI_number: 19704521 # Func_class: R General function prediction only # Function: Metal-dependent amidase/aminoacylase/carboxypeptidase # Organism: Fusobacterium nucleatum # 32 386 2 356 359 308 46.0 2e-83 MKERIYNTIDFHTPEFQAISTYIGQNPELGHEEFLACARLIEELERHDFTVERAVLDIPT AFLGVYDSGKPGPTVAFLAEYDALPELGHACGHHLICMMSIGAAVGLKSVIDETGGVIRV YGTPAEETKGAKVPMSAAGLFDDVDFALMAHPYYTYERSGESLALDAIQFEYFGKAAHAA ASPYEGVNALDAVLMLFNSVNALRQQLRSDVRIHGIITEGGQAANIIPDYAVAQFYVRSS SRAYTNEVAAKVLKCAEGAALQTGCTLTTSNYEYSYDELNTNETLSAVFNRNLASAGITE EMIQTGKDHGSLDLGNVSLHCPTIHPYMKVIEEKHLLHTPEFRDLAMQQRALDGMILAAK MLAATAYDVITDPALLAEIKAEFERTRLTR >gi|333607359|gb|AFDH01000034.1| GENE 214 214999 - 215652 731 217 aa, chain - ## HITS:1 COG:BS_glnP KEGG:ns NR:ns ## COG: BS_glnP COG0765 # Protein_GI_number: 16079799 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Bacillus subtilis # 1 217 1 218 218 246 68.0 3e-65 MDFSGAYSADNLMFLLKGFLVTLEMAVIAIILSFVIGSLVGVIRYSKIPVLSQLMAVLVE VIRNLPLLLIIFFVYFAVPEVTGVEMSILTSAIISLTIFESAMIAEIIRGGLNSIDKGQI EASRSSGLTYVQTLWHIVFPQAVRRMVPPIVSQFISLLKDTSLTVIIAAPELMHNAQIIN GSSQKFIVPIFLLAALMYFVVNYCISLFAQRFELKRT >gi|333607359|gb|AFDH01000034.1| GENE 215 215703 - 216359 829 218 aa, chain - ## HITS:1 COG:BS_glnM KEGG:ns NR:ns ## COG: BS_glnM COG0765 # Protein_GI_number: 16079798 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Bacillus subtilis # 4 218 1 215 216 241 63.0 8e-64 MLPVDLSVITENWDRYIEGFGNTVMVSLLSLVLSFLLGTLVAVLRISPFKALRAISGVYV EFVRNIPLLLIIFFFYYGSSEFGLSLDGFTAGTIGLTIYTSAFIAEAIRAGILAVPAGQA EAARSSGLSYGQTMIHVVLPQAIKIVIPPLGNQFLNLIKNSSILGVIAGMDLMYFGDLIN SDTLDTFNVYIGVALFYLVLTIPLSLLVQYLERRMARA >gi|333607359|gb|AFDH01000034.1| GENE 216 216439 - 217302 1245 287 aa, chain - ## HITS:1 COG:BS_glnH KEGG:ns NR:ns ## COG: BS_glnH COG0834 # Protein_GI_number: 16079797 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Bacillus subtilis # 5 287 3 273 273 300 61.0 2e-81 MKVWKPFKIGMILLTFILVLGACGKAKDTGGSTGGSTPGGSAAPTTDTKTLDAIKQRGKF VVGVKFDTNLFGLKDPGTGQVNGFDIDIAKAIAKKLLGDETKVELKEVTSKTRIPMLQKG DIDAIIATMTISEERKKEVDFTDVYFKAGQSLLVKKGSDIKSIDDVVKKKGVKVLSVKGS TSAKNIRAKAPDAQVLEFENYQEAFTALKSGKGEALTTDNAILYGMTKQDPGYEVVGGTF TDEPYGIAVRKGDAEFTKAVNDVLKELKDSGEYAKIYEKWIGEKPAE >gi|333607359|gb|AFDH01000034.1| GENE 217 217363 - 218091 613 242 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 239 1 242 245 240 47 4e-62 MINFTNVNKYYGSFHVLQNINLEVKKGEVVVVIGPSGSGKSTMLRCINRLEAIQQGELTV EGVRVNDKKTDINKLRREIGMVFQHFNLYPHKKVIDNITLAPVKVLGLSKAEAEKRAMLY LEKVGIPDKAQSFPSQLSGGQQQRVAIARGLAMEPNIMLFDEPTSALDPEMIGEVLDVMK TLAKEGMTMVVVTHEMGFAREVADRVVFMDQGQIVEEALPKQFFENPREERAKLFLSRLF AH >gi|333607359|gb|AFDH01000034.1| GENE 218 218396 - 219382 1226 328 aa, chain - ## HITS:1 COG:BH2747 KEGG:ns NR:ns ## COG: BH2747 COG0697 # Protein_GI_number: 15615310 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Bacillus halodurans # 9 297 8 293 302 219 43.0 6e-57 MTTHSNDKPMIPVPLAFIVGIIGISFSAIFVRWSEAPVAVTAMYRLLLTNLIMLPFLFKY TAEIKAIRWKSVFGLVGSGLFLALHFLLWMASLSYTTVASSTALLTLEPIFVMIGAYWLF RQKNSWGTVIGMLIAMIGAAMIGWGDFRFSGEALKGDLLSIVSAAAVAVHMLLGKTMRQS MSAFVYSFFVFLAAAAALGVYNVVQGTPLTGYSQNDWLMFLLLAIVPTMFGHYLFNWLLK YVKAATVSMSVLGEPLGSTVLAFFLLGEAITGIQIGAGCLLLFGIWLFIRSQGRKGKDEM VATPAVPAPLPEMPGERTGASRPSLTDS >gi|333607359|gb|AFDH01000034.1| GENE 219 219645 - 219986 380 113 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_2657 NR:ns ## KEGG: GYMC10_2657 # Name: not_defined # Def: general stress protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 4 113 3 112 112 139 66.0 3e-32 MANWTEVTTLEQWNEIFDQSAEKPFVMLKHSTTCPVSASALEEYDEYLGKNPNEKVNYYL VKVIESRPVSNKIAEDVGVKHASPQIIYVKDKFAEWNTSHWSVTSKHISAVLD >gi|333607359|gb|AFDH01000034.1| GENE 220 220161 - 220574 572 137 aa, chain - ## HITS:1 COG:RSc1764 KEGG:ns NR:ns ## COG: RSc1764 COG2050 # Protein_GI_number: 17546483 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Uncharacterized protein, possibly involved in aromatic compounds catabolism # Organism: Ralstonia solanacearum # 22 137 14 129 144 62 34.0 2e-10 MEPKNAVSPQFQHLMERARNTFWEYLGCEIVEAAADKVVVRLVAQQHHLNLIGIVHGGVT SSMLDNAMGVVLMLARPDDKIVTTNLNVQFVAPMQPGELYVTAEIVHQSRKMLTAIGRVT DAEGRLGTFGTGTFRVI >gi|333607359|gb|AFDH01000034.1| GENE 221 220681 - 222369 1630 562 aa, chain - ## HITS:1 COG:BH3104 KEGG:ns NR:ns ## COG: BH3104 COG0318 # Protein_GI_number: 15615666 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II # Organism: Bacillus halodurans # 7 561 7 562 566 678 57.0 0 MDSAKPWLHHYESEVASTYEYPRHNLAYFLVQAAGKNPQLPALYFMGKKIKYGQLMEACY RFANGLRQLGVKKGERVAIMLPNCPQSVIAYYGALLAGAVVVQTNPLYMERELEHQLLDS GAVAIVTLDLLYRRVAAVMPRTHLRHIIVSSLKDYLPFPKNILYPIKAKRDGADLSVPWS ESVRSFRTLLAASSAIPVMEEVNAAEDVALLQYTGGTTGLSKGVMLTHMNLIANTLQTKH WFHKAADGEEIYLAALPFFHVFGMTVLMNQAVVRSGMMVLVPKFEVSEILGLISKLKPTV FPGAPTMYIALINHPDIRSYDLSSINVCISGSAPLPLEVQERFEELTGGRLIEGYGLTEA SPVTHANPIWGRRKIGSIGIPFPDTEAKVVDPATGEEAGIGEIGELVVKGPQVMKGYWNR PHDSEAVLKNGWLYTGDMARVDEEGYFSIVDRKKDIIIAGGFNIYPREIEEVLFEHPAVK EAVVIGIPDPYRGETVKAFVIVREGEILSEEELNTWCRERLAAFKVPRRYEFRTQLPKTM VGKVLRRRLLEEELQQISAAKE >gi|333607359|gb|AFDH01000034.1| GENE 222 222400 - 224181 2110 593 aa, chain - ## HITS:1 COG:BH3486 KEGG:ns NR:ns ## COG: BH3486 COG1960 # Protein_GI_number: 15616048 # Func_class: I Lipid transport and metabolism # Function: Acyl-CoA dehydrogenases # Organism: Bacillus halodurans # 9 593 10 594 594 716 61.0 0 MIETRKLTKGGSFVIEDLDVNALVTPEDFTEEQRMMMETTRDFVEGEVLPKDEEIEKLDY ELTVKLMRKAGEIGLLGADVPEEYGGLGLDKISSTVINENLSKASAFALSIGAHVGIGTL PIVFFGTPEQKRKYLPELATGEKIAAYCLTEPTSGSDALGAKTTAKLSDDGQHYILNGSK LYITNAGFADIFIVYAKVDGKDFTAFIVERNLKGFSVGPEEKKMGIKGSSTCPLYFEDVH VPVENLLGEVGRGHIIAFNILNIGRFKLGAGCLGASKEAIELSAKYANTRTQFGQPISSF PLIGKKLAEMNIRTYVTESIVYRTSGMIDTALQNLDHNSAEAGQQSAKAIAEYALECSIN KVFASEALDFVADEGVQIHGGYGFIQEYKIERIYRDSRINRIFEGTNEINRLLIPGTLLK KAMKGELDLMGKAQALQSELMQLIPGQTFDETLEQAAHLTAMAKKVFLMAGGSAVQKYGM NLEKQQEVLSNLADMMIQIYAMETTLVRTRKLIAKSGEVKAKNAIQMTDIFVQEAFAQIE RLAKDTLAAMETGDVLRTQLSVLKKLTRSTPVDAVGLKREIAARVIAAEKYVI >gi|333607359|gb|AFDH01000034.1| GENE 223 224401 - 225585 1378 394 aa, chain - ## HITS:1 COG:BH3487 KEGG:ns NR:ns ## COG: BH3487 COG0183 # Protein_GI_number: 15616049 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA acetyltransferase # Organism: Bacillus halodurans # 1 393 1 393 393 478 63.0 1e-134 MKEAVIVSIVRTPVGKAKKGSLAQTRAEDLGRIVLNEAVRRAPGLRKEDVEDIIIGCAMP EGEQGLNFARTMALYAGFPAAVPAVTINRFCSSGLQSISYAAERIMLGQADVIIAGGVES MSHVPMTGFKLSPHPKLAVEMPEVYMGMGHTAENVAQRFGISREDQDAFAAESHRKAAAA IAAGRFKEEIVPVETSVKGVDAGGKRWEKPVVLDTDEGVRADTTTGVLAKLRPSFALKGS VTAGNASQTSDGAAAAVLMSRERAEELGLKPLAAFRSFALAGVAPEIMGVGPVEAIPKAL KQAGITQDQVDLYEINEAFASQCVHIIRELKLDEAKVNVNGGAIALGHPLGCTGTKLTAS LVHELRRRGGGYGVVSMCIGGGMGAAGVFEVYGE >gi|333607359|gb|AFDH01000034.1| GENE 224 225613 - 228012 2655 799 aa, chain - ## HITS:1 COG:BH3488_1 KEGG:ns NR:ns ## COG: BH3488_1 COG1250 # Protein_GI_number: 15616050 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxyacyl-CoA dehydrogenase # Organism: Bacillus halodurans # 1 454 1 450 458 547 60.0 1e-155 MVNQIQKAAVIGSGVMGAAIAAHLAGAGISCLLLDIVPTVLTDEETKAGLTLEQPKVRNR LAAGAIERLKKTNPAPLYSEAFAARITPGNLEDDLARLSGVDWIVEVVVERLDAKKQLLA RIEQVWKPGTIVSSNTSGISIQAMAEDCGPEFKRHFLGTHFFNPPRYMKLLEIIPGESTD PEILRFMADFCEKRLGKGVVTAKDTPNFIANRIGTYGLLVTLREMLEKGYTVEEVDAVTG PALGRPKSATFRTLDLVGLDTFVHVARNVYDLVDNEAEKTIFDVPAELTGMVERGWIGEK KGQGFYKKIKNEKGKEIQALHLGTMEYAPSRKISSASLEAAKNAKGTAGKIKTLLSTPDK YSELAWNVIKPVLLYSAGKLGEIADSIVEIDNAMKWGFNWDLGPFELWDVIGLERSVTRM EQEGETVPAWVKEWLAAGHTAFYEKRDGMTFYYNQGTYKEVDTRPEHISLKALKQQNKVI LSNSGASLIDIGDGVACLEFHSPNNAIGADILTMVQKSTEEVRRNYRGLVLANEGRHFCV GANVMILLMEAQDGEWDEVDSIIRLFQNSMMTLKKLEKPVVAAPHSMTLGGGVEACLPAD RIIFSPETYFGLVEVGVGVIPAGGGCKEMALRSSRLAAGDPEVDLQPYINRYFETIGMAK VSASGYDTKRLGYMGPRDSVVLNGDHRIYTAKQAVLAMDREGYVLPQEEKIRVVGDSGKA VLQIASYTMKLGGYISDHDQLIANKLAHVLAGGDVPAGSLVSEQYMLDLEREAFLSLCGE PKTQQRMQHMLSKGKPLRN >gi|333607359|gb|AFDH01000034.1| GENE 225 228058 - 230226 2207 722 aa, chain - ## HITS:1 COG:BS_ywjF KEGG:ns NR:ns ## COG: BS_ywjF COG0247 # Protein_GI_number: 16080771 # Func_class: C Energy production and conversion # Function: Fe-S oxidoreductase # Organism: Bacillus subtilis # 5 712 6 697 705 872 59.0 0 MPGAIVQLILFLGVTGFGIYLFAKAVYHRYLYVKLGQPVDWGGQIGERLKDFAVEVFGQT KLLKDKKSGIMHIVIFYGFIILQFGALDIIVKGLSGHGLPLPGYEAFGLIQEITVAAILI AMGYAAYRRYGEKLKRLKRGWKPSLVVYFIFSLMVSVLLTLAFDRIREGLESSGMAPISS VLASAFGWISLGAAAVLYHVFWWAHLLILLAFLVYVPQSKHFHLITAPLNILLKRREPAG RLRKLDLEDEEAESFGLSKIEDLTQKQMLDLYACVECGRCTNVCPASGTGKMLSPMHMIV KLRDHLTEKGAAVTSKSPWVPALAFSGSSVHEMNADGHELGAWNGSGITDIGPTMNAQKH SWVTTGKKPQEMELVGDVMTEEEIWSCTTCRNCEDQCPVANEHVDKIVDLRRHLVLMQGS MPHDGQRAMQNIERQGNPWGISRNDRAKWVQEIDPEGELSVPTVKENPEFDILFFVGSMG SYDNRSRKITRSLVRLMNEANVNFAILGNEEKNSGDTPRRLGNEFLFQQLCEENSKIFRK YGVRKIVTACPHTYNTLKNEYPEFGLEAEVLHHTELLDELVRTGKLTPRHEVNERITYHD SCYLGRYNNVYDQPRNVLKAIPGVELVEMTRSRENGMCCGAGGGMMWMEETAGKRVNLAR TEQALEVNPTVISSACPYCLTMMEDGTKMKEAEETVKTRDIAEILEESVFGAKAPAPFQT VS >gi|333607359|gb|AFDH01000034.1| GENE 226 230545 - 231081 514 178 aa, chain + ## HITS:1 COG:BH3102 KEGG:ns NR:ns ## COG: BH3102 COG1309 # Protein_GI_number: 15615664 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus halodurans # 1 177 17 193 195 167 49.0 1e-41 MKVFAEHGFHRSQVSKIAKAAGVADGTIYLYFKRKEDILISLFREKLGELVGKFHMHIEQ TTGVKEALRKVCEIHYTELENNVDLAFVTQIELRQSSLELRKEIGKAVKPYIELIEKLLV QGVEEKLFRADLDVKLTRLLLFGAMDEVVTSWLISGRKYSLSAQVDGTVQFFLQGIQA >gi|333607359|gb|AFDH01000034.1| GENE 227 231136 - 231897 907 253 aa, chain + ## HITS:1 COG:BS_etfB KEGG:ns NR:ns ## COG: BS_etfB COG2086 # Protein_GI_number: 16079905 # Func_class: C Energy production and conversion # Function: Electron transfer flavoprotein, beta subunit # Organism: Bacillus subtilis # 1 253 1 257 257 261 54.0 7e-70 MDIFVLLKQTFDTEEKIVLENGQISEDGVKFVINPYDEYAVEQAIQLRDEQGGKVVVVSA GPERSAEALRSALAMGADEAVLINDERIGGDEHAVAQALHAFLSREAYDLVLGGNFSVDN GAGQVAVRLATLLGIPHVSSITKLEIAGGKANVHRDAEGDLEAAEVTLPALFTAQQGLNE PRYPSLQGIMKAKKKPFREITLDDIGLGSVESRTERVDLFLPPPRKAGKTLKGEPAQTAA ELVRLLRTEAKVI >gi|333607359|gb|AFDH01000034.1| GENE 228 231973 - 232944 1252 323 aa, chain + ## HITS:1 COG:BS_etfA KEGG:ns NR:ns ## COG: BS_etfA COG2025 # Protein_GI_number: 16079904 # Func_class: C Energy production and conversion # Function: Electron transfer flavoprotein, alpha subunit # Organism: Bacillus subtilis # 1 321 1 320 325 347 56.0 1e-95 MSNTYLIVAEAKGGALRQVSFETIGAAKAAAAEGDSVLAALIGSGVSGLADELAAYGAQK VYVTDHADLRDYNPEAYGKALHDIIRQAEPDAVLFGHTAIGKDLAPQIASLLGAGQISDV TAVESDGGKAVFTRPIYAGKALEKKAFTSFPWVVTVRPNNIAAPAAAEGASAAVENVAYE APSLRTVIREVVQKTSGKIDLAEAKVVISGGRGVKSADGFKPLEELAGVLGGAVGASRGA CDAGYCDYAMQIGQTGKVVTPEIYIACGISGAIQHLAGMSGSRVIIAINKDPEAPIFKVA DYGIVGDLFDVVPLLTEEFRKAL >gi|333607359|gb|AFDH01000034.1| GENE 229 233270 - 234208 770 312 aa, chain - ## HITS:1 COG:no KEGG:Aaci_0227 NR:ns ## KEGG: Aaci_0227 # Name: not_defined # Def: putative transmembrane anti-sigma factor # Organism: A.acidocaldarius # Pathway: not_defined # 9 312 5 275 277 87 27.0 9e-16 MSRQEFPNMCEWLELYMLGGLSQSEREQMEEHLSHCGACKKEREELQAVMDLLPYTAKPA PVPDGMKQRVLGRILESEADHSGQPPFTGASALLQEQAQAQNRVTDASAAAELQKNAGRA EPEPVPAGEHEPVSARRPAGKRSRTFIRWAAGTGIAAAAVILGWVNMQLREDVRSLKGLN ASLQQSVSSLQGQLTLAGQPSQASKANKVVKLNPAVEGIVAQGLATIVIDAKGTHLVVQA ENLPALRDSQAFQVWLIKGEQKVNAGTFLPQGGSGALYYTFEPQEYDTVAITLEPDAGGT QPRGSLVLAAKI >gi|333607359|gb|AFDH01000034.1| GENE 230 234205 - 234783 563 192 aa, chain - ## HITS:1 COG:RSc2361 KEGG:ns NR:ns ## COG: RSc2361 COG1595 # Protein_GI_number: 17547080 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog # Organism: Ralstonia solanacearum # 3 183 29 211 213 92 33.0 4e-19 MNEWPEDAQLVRRIALKQPQALEQLYDRYERPMYSFAYRIVKDSMMAEEVVQELFLRIWN HAERYEDSQGKLSTWMFAIARNIAIDTLRRKQTRTSGQLAEPDKLLQVADRSRGTEEEVE LRFMGEELAVAMEDLNEDQKKVIDLIYFKGYTHQEVSQKQEIPLGTVKSRVRLAMKQLKE KLAGRGKEGAHI >gi|333607359|gb|AFDH01000034.1| GENE 231 235051 - 235554 272 167 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MPAEQRKEAEKRRNRIFSSPRTERIVKSRAYRTAVPVILLIGLAEHAYWIYHLGKNEPAG FVSRQEWASVLLLTVILFSGCLRYMGYKRAEGFAASLKTLLCMLLFVLYAFYCGAGWSSA VEAGGGLETGQSYLLEARTMAFAAASGTALYAIWKWLGAKLTRERHE >gi|333607359|gb|AFDH01000034.1| GENE 232 235901 - 236761 920 286 aa, chain - ## HITS:1 COG:PM1714 KEGG:ns NR:ns ## COG: PM1714 COG1737 # Protein_GI_number: 15603579 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Pasteurella multocida # 14 284 11 285 288 194 36.0 1e-49 MSKIADLNNSLLLLNSIYSSLTKSEQKVADTVLKDPEATVFYTITDLAEKAEVGETSVIR LCRKLGYKGYQEFKLSLVQVLATPSEQVHGKIEESDDLDQIMKKMTSQNSQAVQNSTSLL NVQELQQAIDAILAARKILFFGVGSSGITAQDAKYRFMRLGFNVDAGTDGHIIAMNASLV EKGDVVVGISSSGSTKDLVDAVRLAKQKGAYIICLTNHARSPIANQSDVVLLATAKETPL QGGAFSSKLAQIHLLDILSTAVAMQMKDQTYRALEHTAKSVLDKLY >gi|333607359|gb|AFDH01000034.1| GENE 233 237370 - 238941 1616 523 aa, chain + ## HITS:1 COG:no KEGG:BBR47_39750 NR:ns ## KEGG: BBR47_39750 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 3 520 2 521 524 689 66.0 0 MNRELKADVVIIGGGVGGCAAALASAKMGLKVIMTEETDWIGGQLTSQAVPPDEHKWIEQ FGCTRSFRQFRNGVRSYYRDYFPLTAEARAIVNLNPGNGGVSRLCAEPRAMLAVLEQMLA PYVNSGKLIILTRHRITAAETDGDKIRAVKVKHLDLGHKHTLTAPYFLDATECGDVLPLA KVEYVTGAESRKDTGEPSAPEVADPKDIQAFTVCFAMDYFEGENHVIDKPKDYKFWRNYK ADFWPDKQLSWISPNPVTLEPAEDTLFPGTEKYPLFNYRRVIDKANFMPGTFPSDISLVN WPQNDYWLGNIYDVPEAEAKKNLEQAKQLSYSLLYWLQTEAPRPDGKAGYPGLRLRPDVV GTEDGMAQAPYIRESRRIKAEFTVKEQHVSTAIRGDKGAEVFPDSVGIGAYRIDLHPSMT GRNYLDVSSLPFQIPLGSLIPVRVNNLLPACKNLGTTHITNGCYRLHPVEWNIGEAAGFL AGYCVQNGYQPREVHADKTKLEGLQNILSWNGVELAWPTITPL >gi|333607359|gb|AFDH01000034.1| GENE 234 239072 - 240124 816 350 aa, chain - ## HITS:1 COG:no KEGG:BCQ_0902 NR:ns ## KEGG: BCQ_0902 # Name: not_defined # Def: purple acid phosphatase/fibronectin domain protein # Organism: B.cereus_Q1 # Pathway: not_defined # 2 340 47 310 819 95 26.0 3e-18 MKFTFAVLSDIHVVAWDPESHRRLEVCLKDYASMKHPPEFIVINGDLTEGFAEDYTVLKR ILSEHVRVPVYVTNGNHEYYRMWYKDGSFNVDTFPNGWSTAEAMARFLGFLGKPLPYYDL CLRGLRFVFMSAERYRDTDPAIREDAWISDEQFAWLERILREESPPRHAEAQSRAETASA SEADPAALEAAGRASSEAETAASPGEEEAGLQPADSTGEEAYRPHGRERPVFVFLHQPLP HTVAGSYDPGEKGVVEDVRLRELLGRHPNVCFFSGHTHYTLASPGIYFEDGCSHMGTSSV RRPIGDGIDPAAPVESESVLVEVAPHSVTIRGRRHNTGEWLSSARFVKRY >gi|333607359|gb|AFDH01000034.1| GENE 235 240225 - 243227 2592 1000 aa, chain - ## HITS:1 COG:all1210_2 KEGG:ns NR:ns ## COG: all1210_2 COG1649 # Protein_GI_number: 17228705 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Nostoc sp. PCC 7120 # 518 845 4 344 489 154 29.0 1e-36 MKRSLRSSGLLRRTLFAVLLLSVAAAGCLPLYGTAGAASGRAAAEAYSQHSGPYGGIAVP PDDPKSGPADQDPFRSANGLGTPLLPQTSLDVTVNESVYGPHIKLPDGTLHPVAGMDQER KEDALTVYTSTYGTYTSPFDDRTIELIVTEGIIVDKISDGKKGTYLPPNGYVLSGTASTK ALLQQLNVGDSLTAVNIKIPVLPTKYVKVGDLIIPVDRVNGPRNQGEAVLFDPGYGASTR TNPWGIEVTFQNGRVTGVKGILMDSGGKFIDNDSPIPKGGYVLSVQAASPYYADLLALAA PGLAVSMELNAYPMYFASKMAYDAFNPRTREDNPAGWDDTNNKPYPGHRGAEQLIVYDSS YGASTGTNPWGGEAAVNADGKIISSGGNNRPIPAGGYVLSGHGSKMAWLSRYAAIGATVK INRTEKQVLLIFAPQSYLDKARLTAGTAEQALEESKRRFMDVPYEEISKEIQQVKQLEIQ AGKHLEEKGVEGLTEVLAELDGKATRVHYMNVESRTVENRGIWIRPKEKSLEEVKRALDK IKAAHLNSVYLETFWNGYTIYPTKNNITAHNPMYGGFDVLQAYLEEGKKRGIEIHAWVEN FFVGGPEPGPIVERKPEWSLLSRKGQNYQEDASSGFRYYFINPALDETHDFLIDVYKELL SKYDVAGLHLDYARYPGSGDFTNDFGYDGYTRSLFQKKYGTDPLLLHPGDALWAQWVDMR VGFVDKFVFRLAKEVKKWKPQVKLTAAVWPEYEIARGDVLQDSMNWVKHNLIDNVFPMSY KLDTSLVVADARKTFEIAKDKSYVTIGVGSFIDLTKDAFIDQIASSHGLGISGSAVFEYE SFFDQGYDKNTVLGVYRNEAIVPDSDPARSIAAVLAGQKRKVKELYVPFKGMDARKAGRY TDEIEEIVKKLGGEKNPRLNPGRLKQVRKSLASLVKDILSDSRLNAEVKERMLYDLKGAL RIAEITAAKSGKGGKDADEADEFNETGVTHAEDEAGEAHE >gi|333607359|gb|AFDH01000034.1| GENE 236 243501 - 244283 967 260 aa, chain - ## HITS:1 COG:no KEGG:PPSC2_c0556 NR:ns ## KEGG: PPSC2_c0556 # Name: not_defined # Def: membrane protein, permease # Organism: P.polymyxa_SC2 # Pathway: not_defined # 6 250 8 250 251 176 42.0 1e-42 MHGWRKTMNIAGLLLVLIVNTLAQVLPINGVTTGEISDRHHTYVTPAGYVFTIWSVIYLG LIGFVIYQARKDTGNRPAVERISYWFVVSCLLNSAWIFLWHYEKIGWSTLVMAALLLTLI AIYQRIRYGRESRAIGEYSFVQVPFSLYLGWICVASIVNVTVWLQDLGWNGWGIDSRMWA VILLTAAGVLAVAFSYGKKDVPFALVFVWAFIGIGVEQQADTWVRNAAWSLAAIVGAATL WLLAKVIRDRKRWDQSYISR >gi|333607359|gb|AFDH01000034.1| GENE 237 244415 - 245506 1039 363 aa, chain - ## HITS:1 COG:BS_ykvY KEGG:ns NR:ns ## COG: BS_ykvY COG0006 # Protein_GI_number: 16078450 # Func_class: E Amino acid transport and metabolism # Function: Xaa-Pro aminopeptidase # Organism: Bacillus subtilis # 3 361 2 363 363 317 44.0 3e-86 MNNRLKQISDHMEQNNLDAVIITVPRHLYYLTGFASDPHERFLGLILPRGEEPFLLVPAL DAEAAAQASSVQRIHTHSDTDSAYEVLRGLLPASLVSIGIETEHWTVSRFEELKSCIGVS RFSSVDELLRDMRVIKSEGEIGLMKEAVTLVEEVLRRGLQKVAVGVTEIELVAELEFQMK KLGAQSPSFSTMVLTGPASALPHGVPGTRKISRGDLLLFDLGVYLNGYASDITRTFAVGE VSEEQRRIYDAVLAGNEAAIQAVRPDVTCASVDAAARNRIEAGGYGTYFNHRLGHGLGLD VHEYPSVHGRNEAILKAGMTFTIEPGVYVPGVGGVRIEDDVLVTAGGVEVLTSFPKQLTV LEG >gi|333607359|gb|AFDH01000034.1| GENE 238 245766 - 246329 740 187 aa, chain + ## HITS:1 COG:aq_407 KEGG:ns NR:ns ## COG: aq_407 COG0492 # Protein_GI_number: 15605907 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Thioredoxin reductase # Organism: Aquifex aeolicus # 2 186 3 201 203 82 34.0 6e-16 MYDLVIIGAGPAGASAGLITARAGKKTLLIDSGQSMTKRAWIENHYGVAEISGPDMVELG KKQAAKFGAEIAEGKVESVDKQDDGFLVTSDQGSYEARHVLLATGVLADLADKIGVTTIP GTEPRIKTIVQTDANNKTSVEGIWAAGTIAGMSVHTIVTAGDGAKAAINIVSELNGERYV DHDVLKS >gi|333607359|gb|AFDH01000034.1| GENE 239 246479 - 247093 640 204 aa, chain - ## HITS:1 COG:BS_ydcA KEGG:ns NR:ns ## COG: BS_ydcA COG0705 # Protein_GI_number: 16077528 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein (homolog of Drosophila rhomboid) # Organism: Bacillus subtilis # 2 200 1 197 199 125 37.0 4e-29 MLFVRQESFKEYIRRYPVTSLLVLIHVVLFVLMEVSGSSTSTRTLIEYGALFSAPGFVPE WWRFFTAMFLHIGLSHLLFNSFALVIFAPPLERLLGSVRYAVFYLASGALGSAFSYWLHT DAYVAAGASGAIYGIYAAYLYLALFRRQLLDQQSRQTVIIILVSGLLFSVIVPNVDLYTH LGGFLAGFILFALFVEFIKRSGRR >gi|333607359|gb|AFDH01000034.1| GENE 240 247198 - 247704 639 168 aa, chain - ## HITS:1 COG:ECs4034 KEGG:ns NR:ns ## COG: ECs4034 COG0693 # Protein_GI_number: 15833288 # Func_class: R General function prediction only # Function: Putative intracellular protease/amidase # Organism: Escherichia coli O157:H7 # 3 160 18 176 186 154 51.0 6e-38 MSKIAFLLAPQFEDSEMQEPYEALKADGHEVVIIGLKQGELLAGKNKKAEYTADQGIKEA KPDEYDAVVIPGGSSPEGLRLDVDIQTFVKKIDEAGKPVAAICHGPQILISAGLIKGRKL TSYPPLQDDVRNAGGEFADQEVVIDGNLITSRTPKDEPAFIAAIKKAL >gi|333607359|gb|AFDH01000034.1| GENE 241 247736 - 248170 386 144 aa, chain - ## HITS:1 COG:no KEGG:PPSC2_c4104 NR:ns ## KEGG: PPSC2_c4104 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa_SC2 # Pathway: not_defined # 1 144 1 156 156 79 35.0 5e-14 MSKHIQAYFRTENDAEDVRIRLQTYSVEQLEVGETQGRVSRTGLIAPPAFAGGTSGAVGV PGATIGTSPSPGGFIPVRAAEDRHDPDRTIRGEDDGPLGDLIFGEGDDDAENLRYVLTAK VPDSDYTEIVEIIRSNKGYVESID >gi|333607359|gb|AFDH01000034.1| GENE 242 248325 - 249722 1185 465 aa, chain - ## HITS:1 COG:BH3670 KEGG:ns NR:ns ## COG: BH3670 COG1316 # Protein_GI_number: 15616232 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus halodurans # 32 341 2 302 304 123 28.0 9e-28 MSDPINPNSTPVSGTDSRKSKLKKKAKWPLWKKIAVTGGIIVLLLVIGIGTYASFLISKA NNIIDTVGTKEVVAPKDSAKVKPISILLMGVDSRKETGSLNSDVMMAISMNPETKSATIV SLPRDLEMKLKKNGDSHKANYFYPHFTLTEPETAMKKTKEFFGNFFEIPFDYMVTIDFEG FKQVVDQLGGVTVDVDQDMYYVDNWDGTRIDLKKGVQKLDGKKTLDFVRYRKSNPGSKFE TQESSDPARNARQQQVLNEILKNLKSLGGVTKASGILEAVGNNLKTDIPSSQIHDMISQY ITIDTQNIELIHMDGDWISPYIVVKDEELAQAKNALKLRLDPNWVPSSSPNSTNSSKGTD NRGNNTDSDGKITPTRTPKPTGVPTHTPKATIKPTPTSTPKSSVRPSPTPEDDDVVPGLT PEPTRKPGGSVTPVPTGKPTTTPKNSEAPKPTTTPQNQETTQKAG >gi|333607359|gb|AFDH01000034.1| GENE 243 249913 - 250347 501 144 aa, chain + ## HITS:1 COG:SSO1865 KEGG:ns NR:ns ## COG: SSO1865 COG0589 # Protein_GI_number: 15898657 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Sulfolobus solfataricus # 1 144 1 143 143 94 43.0 6e-20 MQFLNILVAYDGSEVSKKALEKAVGLAKSNPSAKLEVVHVANMPNLVVGEALISTPAGMS GEYYELAEQIKDDAKQRLVSLSQPAEVYLLNGNPGRAILEHAERTGRDLIVIGSRGLSGV REWVLGSVSHYVVQHAQIPVLVIK Prediction of potential genes in microbial genomes Time: Sun Jul 17 08:28:36 2011 Seq name: gi|333607343|gb|AFDH01000035.1| Paenibacillus sp. HGF7 contig00131, whole genome shotgun sequence Length of sequence - 13245 bp Number of predicted genes - 14, with homology - 13 Number of transcription units - 7, operones - 4 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 123 - 182 3.6 1 1 Tu 1 . + CDS 289 - 396 164 ## + Term 480 - 512 2.3 - Term 264 - 288 -1.0 2 2 Op 1 . - CDS 486 - 1532 441 ## GYMC10_3864 hypothetical protein 3 2 Op 2 . - CDS 1519 - 1884 278 ## COG1695 Predicted transcriptional regulators - Prom 2124 - 2183 7.0 + Prom 2083 - 2142 5.2 4 3 Op 1 . + CDS 2230 - 3117 489 ## COG1051 ADP-ribose pyrophosphatase 5 3 Op 2 . + CDS 3120 - 3671 404 ## COG3236 Uncharacterized protein conserved in bacteria 6 4 Tu 1 . - CDS 3763 - 4362 190 ## BBR47_58850 hypothetical protein - Prom 4387 - 4446 7.9 - Term 4548 - 4580 3.5 7 5 Op 1 40/0.000 - CDS 4618 - 6054 878 ## COG0642 Signal transduction histidine kinase 8 5 Op 2 . - CDS 6047 - 6748 645 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 9 5 Op 3 2/0.000 - CDS 6745 - 7353 484 ## COG0586 Uncharacterized membrane-associated protein 10 5 Op 4 . - CDS 7423 - 7998 291 ## COG3963 Phospholipid N-methyltransferase - Prom 8037 - 8096 4.4 - Term 8169 - 8198 2.1 11 6 Op 1 . - CDS 8246 - 8998 536 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 12 6 Op 2 . - CDS 9021 - 9983 306 ## COG2378 Predicted transcriptional regulator 13 6 Op 3 . - CDS 10030 - 11550 1234 ## COG0477 Permeases of the major facilitator superfamily - Prom 11599 - 11658 2.3 + Prom 11842 - 11901 5.7 14 7 Tu 1 . + CDS 11975 - 13171 538 ## COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase + Term 13197 - 13245 10.5 Predicted protein(s) >gi|333607343|gb|AFDH01000035.1| GENE 1 289 - 396 164 35 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MDQELAAAIAIEFKNNQKVLNAIGDETRQAILMTS >gi|333607343|gb|AFDH01000035.1| GENE 2 486 - 1532 441 348 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_3864 NR:ns ## KEGG: GYMC10_3864 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 343 8 345 345 272 40.0 2e-71 MEVIDRYIYAATQRLPEQQREDIKRELQSLIEDMLEERIPTGQASKEDVESVLLELGPPN ELAAKYRGYERYLIGPMLIDAYLTTLKIVLASIVIGLTAVFIIDTFLSHSGKLDPVTSYL GSLVTGAAQGFAWVTVVFAWMEYRQRINIAGNGSRNKAWRPSDLPLIPDAKLKIKRIRPI LSIFFTIAVMVICLYLTDLLGIWRYHDGVLVSVPFLDNDVFRRYWPLLWIVAAFSITKQI ARIIVRYRSSKLLAFHIVMTIITTMLVCIMLSDQTLWNPHFVQDLTASNLMPAEGNNFKT LVSTWPRVKEWLINAIVLFALLNIIRESLAWYRTKSSPSPITQKKPLV >gi|333607343|gb|AFDH01000035.1| GENE 3 1519 - 1884 278 121 aa, chain - ## HITS:1 COG:CC2969 KEGG:ns NR:ns ## COG: CC2969 COG1695 # Protein_GI_number: 16127199 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Caulobacter vibrioides # 11 109 21 119 130 94 49.0 3e-20 MADVNETIMGLLSELRRGTIVIGVLSQLSEPRYGYSLVPLLEEKGIAVDPGTLYPLLRRL EKQELLESRWDTNESRPRKYYLLSPFGKKVYAGLCQEWRKLVASMEGILTDLGGGEQHGS N >gi|333607343|gb|AFDH01000035.1| GENE 4 2230 - 3117 489 295 aa, chain + ## HITS:1 COG:CAC1777 KEGG:ns NR:ns ## COG: CAC1777 COG1051 # Protein_GI_number: 15895053 # Func_class: F Nucleotide transport and metabolism # Function: ADP-ribose pyrophosphatase # Organism: Clostridium acetobutylicum # 1 289 4 294 307 214 43.0 1e-55 MGLLDRDGLTEREFLEQYRVEDFERPSVAADMVIFTVTNTEAASYRKLPEKELRVLLIRR GGHPYIGKWALPGGFVRLGETTEQAATRELREETGVDDVYLEQLYTFSDIGRDPRTWVMS CSYMALIDSDQVQLKAGDDAAEATWFKVTYRLLRERKELLENGYVKTYEYELKLSSEEEE LTAVVDRTVTVKPTSASTVYSIVSNNGLAFDHAKIIACAFERLRGKVNYTDIALHLMPSL FTLTELQQVYEVILDKELLKAAFRRKVADLVVETDHYTENAGHRPSRLYRRRLED >gi|333607343|gb|AFDH01000035.1| GENE 5 3120 - 3671 404 183 aa, chain + ## HITS:1 COG:PA4580 KEGG:ns NR:ns ## COG: PA4580 COG3236 # Protein_GI_number: 15599776 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Pseudomonas aeruginosa # 2 180 4 182 184 183 50.0 1e-46 MIYTIEELRKAYNEGNKFKFVFFWGHTPSKDGSVDKSCFSQWWKSPFVVEGTAYSCTEQF MMAEKARLFGDDEMLDAILKAHHPKEMKAYGRAVRNFDKDVWDQECYGIVRRGSLAKFTQ NPDLGGYLKSTKNRILVEASPRDRIWGIGMGQSNPDAENPIKWRGRNLLGFVLTDVRDEL LRD >gi|333607343|gb|AFDH01000035.1| GENE 6 3763 - 4362 190 199 aa, chain - ## HITS:1 COG:no KEGG:BBR47_58850 NR:ns ## KEGG: BBR47_58850 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 1 195 16 203 203 322 86.0 4e-87 MRKKLQVYISSTFNDLIEERHTAVEAVLQAGHIPAGIEQFFKESPMKIRKRWIDESDVYI LILGGFYGLTLPDESKSYTHWEYEYAGEAGKPRFAFVVTDEALRQKPYDFAAIEYYQKFQ EFRQSVFETVPTFYVEDVRHIKMVLRDQLREYAARDDLYGWISGKDASDVQNLLEENASL LRENAKLNAELEKNKKANQ >gi|333607343|gb|AFDH01000035.1| GENE 7 4618 - 6054 878 478 aa, chain - ## HITS:1 COG:CAC0565 KEGG:ns NR:ns ## COG: CAC0565 COG0642 # Protein_GI_number: 15893855 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Clostridium acetobutylicum # 10 469 20 497 499 246 31.0 5e-65 MIRLKRPDWIKSLRVKLMLAFGATLVLTTILSLLFDYVTRESRKVYFTSFETSKQNVKQH LSDMERQIPVLSGPEGIDPLLKRESEASRLRILLSDMQGTIVYHSPSVTEDKIDLYQIIY EQRETENQPESGTMYTAITPIQYQGQKLFLVVSGPLFAERGYVYENPPLYSSLVFLLLFL LLFYLLTYSKMKEIRTMSRGVQQIAEGKLSIRLPVKSKDELGTLTASINEMAGQLEEMIA KERLAEQAKSELITNISHDLRTPLTSIIGYLTVLIEHPETSGVLKNYVNNALNKSNQLKK LIDDLFEYTRLTNNQVALDKSRVDLVGMLNQIIMEFLPLAEQHQIRVNSTLPDRKVDVCI DADKIVRAIDNLLTNALKFSVKPGSIDIVMNAEHPWVVLSIANTGLAITPEQEKRLFDRF YKADESRNDHRMPHGSGLGLSIAQSIMQLHEGDIWLRRTGPYYEFFMRIPLPPASVTM >gi|333607343|gb|AFDH01000035.1| GENE 8 6047 - 6748 645 233 aa, chain - ## HITS:1 COG:CAC0564 KEGG:ns NR:ns ## COG: CAC0564 COG0745 # Protein_GI_number: 15893854 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Clostridium acetobutylicum # 8 233 5 230 233 261 55.0 9e-70 MKNEKGASVLIIDDEPEIRDIVQIFLKNEGYEVMEAEDGAAGLELLRKKEFDLVILDVMM PRLDGIKACIQIRQTRNTPIIMLSAKNEDMDKILGLTSGADDYLSKPFNPLELVARVKSQ LRRVRMSETQDKRQPLELSIGDLVLNIPRHQVTVKGKDISLTPLEFDILELLATHRGHVF SVDRIYETIWKDPALQSDKTVMVHIRNLREKLKDNPREPKYIKTVWGVGYKID >gi|333607343|gb|AFDH01000035.1| GENE 9 6745 - 7353 484 202 aa, chain - ## HITS:1 COG:BH2202 KEGG:ns NR:ns ## COG: BH2202 COG0586 # Protein_GI_number: 15614765 # Func_class: S Function unknown # Function: Uncharacterized membrane-associated protein # Organism: Bacillus halodurans # 1 173 1 173 210 98 27.0 7e-21 MSIDSILDGIHHFGYFALFFSLWLGIVGMPIPDEVVVMTGGMVGSLRLLQTVPAYVMTYL GVVSGLSLGYILGRVMGPHVVERLREKKKIAPYIQKSDRLLEKYGSFALVISYCFPVVRH VLPYLVGVNKMPFPKYAMISYSTGLLWTTIYFIIGYYFGGNIERIGNNVYKYGYYGLAAA VIFIISAAVIKAIRKKKKVCSE >gi|333607343|gb|AFDH01000035.1| GENE 10 7423 - 7998 291 191 aa, chain - ## HITS:1 COG:BH2056 KEGG:ns NR:ns ## COG: BH2056 COG3963 # Protein_GI_number: 15614619 # Func_class: I Lipid transport and metabolism # Function: Phospholipid N-methyltransferase # Organism: Bacillus halodurans # 17 190 6 183 187 100 32.0 2e-21 MLANTFIKTKITDRWRFLKKFIQNPHDVGSIAPSSNRLTQKMLEPVPWNHVHTLVELGAG TGVFTQMIYDLVRPDCQVAVFEKEEEMRDLLKREFVGFHMFPNALELKDSLSSIGAGRVD CIVSGLPFANFSQADREKIIRQVRETLREDGLFITFQYSLQMKTMLQAVFDEVSISLVPW NLPPAFVYTCK >gi|333607343|gb|AFDH01000035.1| GENE 11 8246 - 8998 536 250 aa, chain - ## HITS:1 COG:BH2491 KEGG:ns NR:ns ## COG: BH2491 COG1028 # Protein_GI_number: 15615054 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Bacillus halodurans # 4 249 2 246 246 154 40.0 2e-37 MMSLDGKVAIVTGGARGVGRATCIQLAKQGAKIVVNDFGNELTAESVVSEIVADGGEAVS IPADARSAGQMEQLVKAVKHAFGRIDVLVCNASNGATAATFAELSWESFERQLTDELKAA FEPTKAVIPTMTAQQFGRIIYLSSTEGKDPTPQYIAFGTAKGGLDTFARYIAQEFGPCGI SANVVAPGFVRADETLMISEEEARVIGSFTPLGRIAEPEDVAGVISFLAGDGARFLTGTY TPVTGGLVME >gi|333607343|gb|AFDH01000035.1| GENE 12 9021 - 9983 306 320 aa, chain - ## HITS:1 COG:CAC3494 KEGG:ns NR:ns ## COG: CAC3494 COG2378 # Protein_GI_number: 15896731 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Clostridium acetobutylicum # 1 304 1 289 300 172 31.0 1e-42 MKLERLMTITILLLNRKRVQAQELADQLEVSLRTIYRDLDSLGQAGIPIVSYTGMEGGYE IMDSFRLDRQLLSFDELTALSTALRGLESTKAYDRSNMDLLLSKVGAMVAQAEQGRAGEG DRIHIDFTPWKNSEEDQSRYNSLRQAVNDRKLIRFRYTSRTGDEQKREVEPMALVLKNYA WYLHGYCRLRGDYRIFKLTRIRELGIQAGTFIRRAESLAQLNDRWKKPEINEANEAIAVV LQFKASAAVSVMDHFDEKDIERLSDGQLIVRMTYSSEHWLIRTVFHYMTDVIVLEPASIA AKVRQTALDIAGQYGVSDTK >gi|333607343|gb|AFDH01000035.1| GENE 13 10030 - 11550 1234 506 aa, chain - ## HITS:1 COG:BS_mdr KEGG:ns NR:ns ## COG: BS_mdr COG0477 # Protein_GI_number: 16077376 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus subtilis # 18 417 24 426 426 358 50.0 1e-98 MRNKLSAIVGGLLLAILMASMDNTIVSTAIGTIVGEMGGLDKFVWVTTAYMVTEMACMPI FGKLSDMYGRKRFFIFGIIVFMIGSALCGIAQSIVELSIYRAVQGVGAGAMVSIAFTILF DVVSPKDRGKMMGAFGAVFGLSSVVGPLLGGYITDHINWSWIFYINLPLGFIALLMIALF YKESAEHSQQKIDWAGSILLIGTVVCFIFGLELGGKTYAWDSPQIIGLFTGFAVLAFMLV IVEKKAAEPIISFGLFRSRLYTTSNLVAMLSGAAYMTAAIFIPIYVQGVLGGSASNSGLT LLPMMLGSVVTATLGGFLMTKLQYRTIMIGTLAMLLTGLALLSQITVESSRLAITGIMIL IGLGIGASFSVLSTSVLHSFPAAQRGAANATLNFNRSLGMALGITIFGMVQSHSLLSKLT ESLGKGDIAVPVDLNLSDPHSLLNPALRQSVDPQLLDTITAGLSGSIGATFAWSLIPAVL ALIAAFLMTKDKMDPAAEGEEFATAH >gi|333607343|gb|AFDH01000035.1| GENE 14 11975 - 13171 538 398 aa, chain + ## HITS:1 COG:CAC2716 KEGG:ns NR:ns ## COG: CAC2716 COG1819 # Protein_GI_number: 15895973 # Func_class: G Carbohydrate transport and metabolism; C Energy production and conversion # Function: Glycosyl transferases, related to UDP-glucuronosyltransferase # Organism: Clostridium acetobutylicum # 1 391 1 395 407 280 39.0 5e-75 MARVLFINAGSEGHINPTIGVVQELISRGEEVVYFCIGAYRDRIEKTGASVRIIDDQQFI EAFTSGGKDYVLERAIGLLLTADVVIPAVLEQIRGEHFDYMIHDSMFGCGRMLAQILKLP AISSCTSFAHIEETFDALLEPPPVKTPEEIVERFHSLTKKVGEKYGVEVRTPYEVFCNPA PFTIVYTTRDFQTNEEKFDQTYKFVGPSLSSRPAQKNFDLTAIKGKNPIYISLGTVFNQA IEFYKLCFEAFGNTEHTIVMSVGNNTLISDLGEIPDNFIVKNYVPQTEVLQHTKLFITHG GMNSTHEGLYNGVPLVVIPQNADQPMVAGQVAKIGAGLALQMQGLTAHQLREAADQVLSL PSFKEAVANIGESFRKSGGYRQAVDEIFEFKNRSYIYQ Prediction of potential genes in microbial genomes Time: Sun Jul 17 08:28:53 2011 Seq name: gi|333607330|gb|AFDH01000036.1| Paenibacillus sp. HGF7 contig00094, whole genome shotgun sequence Length of sequence - 7760 bp Number of predicted genes - 12, with homology - 10 Number of transcription units - 7, operones - 4 average op.length - 2.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 25 - 831 349 ## gi|291531989|emb|CBK97574.1| hypothetical protein EUS_26360 + Term 912 - 958 4.1 + Prom 940 - 999 6.2 2 2 Op 1 . + CDS 1029 - 1793 723 ## COG0789 Predicted transcriptional regulators 3 2 Op 2 12/0.000 + CDS 1795 - 2145 384 ## COG2076 Membrane transporters of cations and cationic drugs 4 2 Op 3 . + CDS 2145 - 2459 360 ## COG2076 Membrane transporters of cations and cationic drugs + Term 2462 - 2506 6.4 - Term 2210 - 2247 1.6 5 3 Tu 1 . - CDS 2456 - 2842 186 ## - Prom 3038 - 3097 2.2 + Prom 2962 - 3021 7.5 6 4 Op 1 . + CDS 3068 - 3292 220 ## GYMC10_0316 hypothetical protein + Prom 3308 - 3367 4.0 7 4 Op 2 . + CDS 3387 - 4064 560 ## COG0225 Peptide methionine sulfoxide reductase 8 5 Op 1 . - CDS 4188 - 5045 640 ## COG0500 SAM-dependent methyltransferases 9 5 Op 2 . - CDS 5116 - 5565 394 ## GY4MC1_1901 MarR family transcriptional regulator - Prom 5591 - 5650 9.7 + Prom 5617 - 5676 8.5 10 6 Op 1 . + CDS 5773 - 7071 1416 ## COG1055 Na+/H+ antiporter NhaD and related arsenite permeases 11 6 Op 2 . + CDS 7068 - 7187 112 ## + Term 7359 - 7391 -0.3 - Term 7102 - 7141 -0.6 12 7 Tu 1 . - CDS 7262 - 7744 379 ## COG1335 Amidases related to nicotinamidase Predicted protein(s) >gi|333607330|gb|AFDH01000036.1| GENE 1 25 - 831 349 268 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|291531989|emb|CBK97574.1| ## NR: gi|291531989|emb|CBK97574.1| hypothetical protein EUS_26360 [Eubacterium siraeum 70/3] # 43 154 579 689 888 64 33.0 7e-09 MVRESDYRQALNFRETGKFTESITAFYQLGDYRDSLEQEKESRLQLGNSFFENKEYDKAV AQFDPIKNYKEATEKYTESVYQLSLVHLKKEKFNEAAANFEKLGDYKDSKNQLIESKYQI AANMKGSRKELEQAREIFKELGNYKDSAAKAENMSTALKWHGRWYKIRYDQWVGGTVESD KTYGPFGKEPFYDYIDIDFYNNKMVEFSDIATLNFDLAISGNTLTRDFYGNKDKYVLKGN KLVFEELGHVTKYRVTYVREDVKDQEKP >gi|333607330|gb|AFDH01000036.1| GENE 2 1029 - 1793 723 254 aa, chain + ## HITS:1 COG:BH3496_1 KEGG:ns NR:ns ## COG: BH3496_1 COG0789 # Protein_GI_number: 15616058 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus halodurans # 2 72 5 76 117 68 52.0 9e-12 MYSIGELSKKTNISIRTLRYYDEIGLLKPAKVADSGYRYYSGREIKLLQHIAAMKELGFT LASIKKMLSSEEETSEINWRAYLDFELAAVAEERRRLDEMEKLLQITRHAFEMKGDVESE DIFLFIRSLSSPSEGRETFLAQHFTEKEIRIIESLPDLSADDPRNMAWAKLIREVKEHLH EPPSAAVSQKLAARIVEISMDWFQQDEQLIEKYWALIRPEEGEEAKVYGMEADVMDYIDR IVDWHLQHLEEGQS >gi|333607330|gb|AFDH01000036.1| GENE 3 1795 - 2145 384 116 aa, chain + ## HITS:1 COG:ECs5129 KEGG:ns NR:ns ## COG: ECs5129 COG2076 # Protein_GI_number: 15834383 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane transporters of cations and cationic drugs # Organism: Escherichia coli O157:H7 # 14 110 52 153 155 67 39.0 8e-12 MGAKSEVRMSEARAWTYVILGGLLEIVWASGFKYEAIPGIVVLIALLTSFDLIIRAAKVL PVGTVYAVFAGMGTLGTTIVEIVMSGGAVSMVRIVFILLLLTCIVGLKLSGKGSEA >gi|333607330|gb|AFDH01000036.1| GENE 4 2145 - 2459 360 104 aa, chain + ## HITS:1 COG:BS_ykkD KEGG:ns NR:ns ## COG: BS_ykkD COG2076 # Protein_GI_number: 16078375 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane transporters of cations and cationic drugs # Organism: Bacillus subtilis # 1 102 2 103 105 77 46.0 5e-15 MDWLLLISAGLLEVIGVIGIKRVAQKNNVTNNIILIGGFLVSFQLLVRAMETIPLATAYA VWTGIGTVGAAVVGMLFFKEPRGWIRIGCIIGVIFSVGGLKLAG >gi|333607330|gb|AFDH01000036.1| GENE 5 2456 - 2842 186 128 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MDPVVSGTAALGTEVLGTEVLEARSGLEVRSDLEDLEDLELRLGSGDLVVRLGLEALEPP SLVLSFSANIIKEQLTRISLDNQPYLTQELLTTHTPGSKRHLNFTPINYDRLVKKTKKGA AAAAPLLI >gi|333607330|gb|AFDH01000036.1| GENE 6 3068 - 3292 220 74 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_0316 NR:ns ## KEGG: GYMC10_0316 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 74 1 74 75 105 79.0 4e-22 MQAFQDWNQKVKKTFNATSNEVVLTVTEAGNLLGLSKDQMKTYVDKSTLTKVPIMRSVHR YLLLKKEIDELLER >gi|333607330|gb|AFDH01000036.1| GENE 7 3387 - 4064 560 225 aa, chain + ## HITS:1 COG:SSO1503 KEGG:ns NR:ns ## COG: SSO1503 COG0225 # Protein_GI_number: 15898331 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptide methionine sulfoxide reductase # Organism: Sulfolobus solfataricus # 20 158 1 146 177 116 37.0 3e-26 MNDCRAGKETAERTLPQNNLQTATLGMGCFWSPDALFGHLPGVIRTRTGYAGGRTEQPTY REMGDHSETVELEFDPAVITFEDILDVFWDNHNPVNINGYKGRQYLSLILYHNREQQEAI QAVISRRKKQGSTERETEAAPYSVFYPAEERHQKYYLKRFPDAVDKLGTLYPSHRELVNS TLAARLNGLAKGYTSLERVAGEIKQWPMEPEAREKVLDLIRRIRW >gi|333607330|gb|AFDH01000036.1| GENE 8 4188 - 5045 640 285 aa, chain - ## HITS:1 COG:VNG7121 KEGG:ns NR:ns ## COG: VNG7121 COG0500 # Protein_GI_number: 10803668 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Halobacterium sp. NRC-1 # 6 284 122 391 391 257 49.0 2e-68 MTKEKRDHDLIRHNVRSKYKEVAVKSIPLTSCCSPGAPAESQAENQTESCCDTPADFDAI SARLGYSGEELTAVPEGANLGLGCGNPQAMAALKPGETVLDLGSGGGFDCFLASRQVGAA GRVIGVDMTPEMVTRARRNAEKGNFSNTGFRLGEIEHLPVRDSSVDVIISNCVINLSPDK QQVFHEAFRVLKPGGRLAISDIVTTAELPEEIRNDINDLYSGCISGASSIADLERLLQNS GFTGISIEPKDQSKAFIKDWVPGAAIDRYIVSAVIQAVKPSGADS >gi|333607330|gb|AFDH01000036.1| GENE 9 5116 - 5565 394 149 aa, chain - ## HITS:1 COG:no KEGG:GY4MC1_1901 NR:ns ## KEGG: GY4MC1_1901 # Name: not_defined # Def: MarR family transcriptional regulator # Organism: Geobacillus_Y4.1MC1 # Pathway: not_defined # 1 147 1 147 148 210 71.0 1e-53 MQDERELFQRMTRRFGLLNKNCCTVGGCDISLVQSHILYEIDRRHKPSMQEVAEILGTDI TTFSRQVQSLIKMKLVQKTPDPVDRRIHTLSLTTEGKFVATAIDTQMNDYLEEIFSYMSE FEKETLIRSIKLFNDAMGKSSRCCTPVSG >gi|333607330|gb|AFDH01000036.1| GENE 10 5773 - 7071 1416 432 aa, chain + ## HITS:1 COG:BS_ydfA KEGG:ns NR:ns ## COG: BS_ydfA COG1055 # Protein_GI_number: 16077601 # Func_class: P Inorganic ion transport and metabolism # Function: Na+/H+ antiporter NhaD and related arsenite permeases # Organism: Bacillus subtilis # 1 431 1 431 435 566 75.0 1e-161 MITVVWACLIFLITLTLIIWQPRNLSIGWSACGGAAATLLVGVVTFQDVWDVTNIVWNAT LTFVAIILISLILDRIGFFEWAALHMAKAAKGSGLRMFIYVSVLGAFVSALFANDGAALI LTPIVLAMVRALRFDEKKVFPFIIAGGFIADTTSLPLVVSNLVNIVSADYFGISFMEYAG RMIVPNVFSLAASILVLYLFFRKSIPRHFDAEQVKKPADALKDPAMFRLSWAVLGVLLAG YFVSGFLNIPVSVIAGAIAVFFLLMARKSSAVPVREVVKGAPWAIVFFSVGMYVVVYGLR NAGLTDLLAGVIQAAADQGMFAATMGMGFLAALISSLMNNLPTVMIDALAIDATSSAGAA KEALIYANVIGSDLGPKITPIGSLATLLWLHVLNSKGLKISWGTYFKTGILLTVPTLFIT LLGLYFWLRILA >gi|333607330|gb|AFDH01000036.1| GENE 11 7068 - 7187 112 39 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNEAGVDISAQTSDKIDPALLDRADHVVILCGDAAAFPA >gi|333607330|gb|AFDH01000036.1| GENE 12 7262 - 7744 379 160 aa, chain - ## HITS:1 COG:SP1745 KEGG:ns NR:ns ## COG: SP1745 COG1335 # Protein_GI_number: 15901577 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Amidases related to nicotinamidase # Organism: Streptococcus pneumoniae TIGR4 # 7 152 19 159 166 101 34.0 6e-22 MPENHLYRKDELAGRINVLIDKARSASVPVVFIQHTSSDPGDEFYPGSSDWQLYHGLARR EDDTVIRKTTWDAFHETELPDFLQKQGVEQLVFAGAQTEFCLDTTLRSAYSHGYKCNLVA KDCHSTLDSSVLPASKIIEHHENIWNGRFASLQPMEAIAF Prediction of potential genes in microbial genomes Time: Sun Jul 17 08:29:25 2011 Seq name: gi|333607318|gb|AFDH01000037.1| Paenibacillus sp. HGF7 contig00111, whole genome shotgun sequence Length of sequence - 12148 bp Number of predicted genes - 12, with homology - 2 Number of transcription units - 9, operones - 3 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 289 - 756 -175 ## - Term 819 - 851 3.2 2 2 Op 1 . - CDS 863 - 1690 198 ## COG1793 ATP-dependent DNA ligase - Prom 1716 - 1775 4.7 - Term 1696 - 1745 7.2 3 2 Op 2 . - CDS 1785 - 2144 103 ## COG0550 Topoisomerase IA - Term 3578 - 3623 10.1 4 3 Tu 1 . - CDS 3632 - 4222 229 ## - Prom 4417 - 4476 9.2 5 4 Tu 1 . - CDS 4882 - 4989 160 ## - Prom 5071 - 5130 2.8 6 5 Tu 1 . - CDS 5794 - 5904 60 ## - Prom 6101 - 6160 1.7 - Term 6135 - 6188 4.4 7 6 Op 1 . - CDS 6197 - 6781 234 ## 8 6 Op 2 . - CDS 6796 - 7047 58 ## 9 7 Tu 1 . + CDS 7444 - 7629 69 ## + Term 7739 - 7789 3.2 10 8 Op 1 . - CDS 8411 - 8938 -192 ## 11 8 Op 2 . - CDS 8943 - 9050 85 ## - Prom 9275 - 9334 4.3 12 9 Tu 1 . - CDS 9540 - 9722 116 ## - Prom 9818 - 9877 6.1 Predicted protein(s) >gi|333607318|gb|AFDH01000037.1| GENE 1 289 - 756 -175 155 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLQTTATDVSGYRLQGTTADPQNWRDRRTYGVGRASCSRRGTGDSGSAGDDRGTTRPALA ADVLPEIRSAGVPGGQMTSGRRAAVGGGPPVIPDPLCRGRSARSSPAAAGLLEIRGAGAA CSGQMAWRCPGELLTTPVLPDPSVGDGRGTAEPSS >gi|333607318|gb|AFDH01000037.1| GENE 2 863 - 1690 198 275 aa, chain - ## HITS:1 COG:BS_yoqV KEGG:ns NR:ns ## COG: BS_yoqV COG1793 # Protein_GI_number: 16079109 # Func_class: L Replication, recombination and repair # Function: ATP-dependent DNA ligase # Organism: Bacillus subtilis # 1 270 6 265 270 190 43.0 3e-48 MLLQYSKDNMPFNSARHIAELKFDGIRLIVSHTDEIKLYTRHNNDVTAKFPELVLKSPVP PGTILDGEVIVTDADGKPDFEGMLARFQSKSNKTPVTFVAFDIIKHRGIDVTSLPLMRRK DLLEQAFEETDYYKRVQVVRGLTTEYFKIVKQHGLEGIVIKDKDSRYEIDRRSWAWQKVI NWTYADVYISGYRKKNFGWLASVEATDGNMRPAGIIELGPTPTHKKAFNGVRKNLVFEED KNFVYMQPLLKARVKTRNWTKKGMLRSPVFVDFLL >gi|333607318|gb|AFDH01000037.1| GENE 3 1785 - 2144 103 119 aa, chain - ## HITS:1 COG:RSc0066 KEGG:ns NR:ns ## COG: RSc0066 COG0550 # Protein_GI_number: 17544785 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Ralstonia solanacearum # 2 107 503 610 877 66 36.0 1e-11 MAMKSAGKSLQSSSLRQSMDQRGLGTPATQSGIIERLKTTGLIARSTSGHLCGTEKGKKI IENLIDDRIASAEITGEFEYKLKKVEDGELSGAQFMADLSHLVTQYVVSYKNTKKQART >gi|333607318|gb|AFDH01000037.1| GENE 4 3632 - 4222 229 196 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MDLIIEEHFSDCEDVHTLYLLGTNVLRDLAASEFSMDRVRATVYSSSVIYDNLIANYEDA VGEELDFVNRDSPVILDSWDAWTVVASLIKAGYLKIYEKLPVWSDKHKVQGCDHCIFRKA DDQGQEYCALWETNYFREWDKLCPFPTNGSGYTDYHEVRPEEITDPSYKTAFIPIEQRKN EYMGYKVNDKPPVEED >gi|333607318|gb|AFDH01000037.1| GENE 5 4882 - 4989 160 35 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKGSFSEWVEPIRIPIEEMEQLVFFAEQAMQIPYL >gi|333607318|gb|AFDH01000037.1| GENE 6 5794 - 5904 60 36 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MPIENNGVIDGHPASRCKWKWKASLEEEMKKLLSNG >gi|333607318|gb|AFDH01000037.1| GENE 7 6197 - 6781 234 194 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVTLSHLDVAPNNTSLQTQSWANKLLVEYIESRARLLEASKKDISAEDRTTINSMINELN ESISYLGYKYCGLQNDSEIKHLKNQIQWNKHKRFPYGTNDRHADPYYTEDKIIDGLEKDG VAEDTEIVSIGRDMEHLSPRQKEIIEMKASGMTNSQIAATCKVAEGTVTKHTKMARDKTK ALQAEGYQLSLVIE >gi|333607318|gb|AFDH01000037.1| GENE 8 6796 - 7047 58 83 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLTSNKRDWMVKQRKKLDLTQDDVAKEVGVNRAHISNIEKGNRNPTVGLAMSLSEVLQVN WQRFFEQEPGKKTTEFNTKAIQC >gi|333607318|gb|AFDH01000037.1| GENE 9 7444 - 7629 69 61 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MEEDIELTEFLKQSSVMYQGVPLTPLDIERLNLVLEGLFLEAREKKNKKKQRETEKKKPE E >gi|333607318|gb|AFDH01000037.1| GENE 10 8411 - 8938 -192 175 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MDRGFYSCSPPEDPQSRHGSRRWPGESLTASDRCFRLSPAGDDRGRLNRHPQLLASWGIR RAGADAGGRTALAKRTADGGGLVLPDPACRGRSKCGDSGSWSCGLLEFLSAGAAAGRRTA LPGELLTAPDRCASESRLQGTIEVWRSRLLKLRPPGVTRRRRGSRRTDGDGQANC >gi|333607318|gb|AFDH01000037.1| GENE 11 8943 - 9050 85 35 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSKKRAKGTKRGFLKLNMFGIFSLLIDFSWNESES >gi|333607318|gb|AFDH01000037.1| GENE 12 9540 - 9722 116 60 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSLRDAALASGLSHNYIRELEVNKSRVTLNPIKPSFATLRKLSEAYKYPYEELLKIAGYI Prediction of potential genes in microbial genomes Time: Sun Jul 17 08:30:41 2011 Seq name: gi|333607289|gb|AFDH01000038.1| Paenibacillus sp. HGF7 contig00099, whole genome shotgun sequence Length of sequence - 28051 bp Number of predicted genes - 27, with homology - 23 Number of transcription units - 9, operones - 4 average op.length - 5.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 703 412 ## GYMC10_1537 peptidase M23 - Term 767 - 797 1.0 2 2 Op 1 1/0.000 - CDS 799 - 1947 558 ## COG0772 Bacterial cell division membrane protein 3 2 Op 2 22/0.000 - CDS 1955 - 2749 833 ## COG2894 Septum formation inhibitor-activating ATPase 4 2 Op 3 3/0.000 - CDS 2813 - 3457 612 ## COG0850 Septum formation inhibitor 5 2 Op 4 19/0.000 - CDS 3536 - 4063 647 ## COG2891 Cell shape-determining protein 6 2 Op 5 22/0.000 - CDS 4066 - 4944 1044 ## COG1792 Cell shape-determining protein 7 2 Op 6 4/0.000 - CDS 4981 - 6012 1158 ## COG1077 Actin-like ATPase involved in cell morphogenesis - Prom 6068 - 6127 3.5 8 2 Op 7 . - CDS 6162 - 6851 527 ## COG2003 DNA repair proteins - Term 7648 - 7706 3.0 9 3 Op 1 . - CDS 7708 - 8163 419 ## COG1959 Predicted transcriptional regulator - Prom 8189 - 8248 4.2 10 3 Op 2 . - CDS 8250 - 8876 801 ## COG0424 Nucleotide-binding protein implicated in inhibition of septum formation 11 3 Op 3 . - CDS 8929 - 9171 439 ## BBR47_18300 hypothetical protein - Prom 9198 - 9257 5.4 + Prom 9129 - 9188 4.3 12 4 Tu 1 . + CDS 9320 - 10528 1201 ## COG0860 N-acetylmuramoyl-L-alanine amidase + Term 10535 - 10572 10.1 - Term 10518 - 10566 8.2 13 5 Tu 1 . - CDS 10590 - 12428 1263 ## GYMC10_1528 sporulation domain protein - Prom 12496 - 12555 3.7 + Prom 12497 - 12556 4.3 14 6 Tu 1 . + CDS 12581 - 12898 330 ## + Term 12984 - 13016 2.4 - Term 12940 - 12979 5.2 15 7 Op 1 . - CDS 13034 - 14419 1838 ## COG0773 UDP-N-acetylmuramate-alanine ligase 16 7 Op 2 8/0.000 - CDS 14428 - 15804 1303 ## COG0285 Folylpolyglutamate synthase 17 7 Op 3 . - CDS 15884 - 18550 3059 ## COG0525 Valyl-tRNA synthetase + Prom 18876 - 18935 4.6 18 8 Tu 1 . + CDS 19049 - 19213 179 ## - Term 19236 - 19276 6.2 19 9 Op 1 . - CDS 19286 - 20161 738 ## 20 9 Op 2 . - CDS 20205 - 20885 504 ## 21 9 Op 3 . - CDS 20882 - 21373 68 ## Pjdr2_0418 VanZ family protein 22 9 Op 4 4/0.000 - CDS 21396 - 22748 1648 ## COG1004 Predicted UDP-glucose 6-dehydrogenase 23 9 Op 5 . - CDS 22750 - 23661 998 ## COG1210 UDP-glucose pyrophosphorylase 24 9 Op 6 9/0.000 - CDS 23700 - 24938 1215 ## COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis 25 9 Op 7 3/0.000 - CDS 25230 - 25865 673 ## COG0110 Acetyltransferase (isoleucine patch superfamily) 26 9 Op 8 5/0.000 - CDS 25862 - 27655 1759 ## COG2148 Sugar transferases involved in lipopolysaccharide synthesis 27 9 Op 9 . - CDS 27692 - 28051 387 ## COG0451 Nucleoside-diphosphate-sugar epimerases Predicted protein(s) >gi|333607289|gb|AFDH01000038.1| GENE 1 1 - 703 412 234 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_1537 NR:ns ## KEGG: GYMC10_1537 # Name: not_defined # Def: peptidase M23 # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 210 1 197 302 92 31.0 1e-17 MENKHNVRQRRLEKIRELQESPPGKAPRHRQSRELLPLGNPASEVEPAPDMLPLVRRDQE FDDRWNDPEYVWKQKMQRELQLPAAYYARRPGAMDPEDGDGGGYHPRIPYRIRFLRQLVA SAMLFGLIWGMFQLQHPLIERGKGIVATALSEPLDFQQLSAWYQKTFAGAPSFIPAFHSD EENPAVKADAQKRSYFVPLKGKIHQTYTADKPFVSVAAEPHTPVYALDAGQVTF >gi|333607289|gb|AFDH01000038.1| GENE 2 799 - 1947 558 382 aa, chain - ## HITS:1 COG:BH3275 KEGG:ns NR:ns ## COG: BH3275 COG0772 # Protein_GI_number: 15615837 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Bacillus halodurans # 5 371 8 383 398 208 35.0 1e-53 MLAKLKKLDLTIIFLLMVLITISSFLVYSADIDDPHINVNWTKTIIIYVIALFALTACSF LDYRILIRFWIFPYLISIALLVFVLKVEAINGASGWISIGDFLFQPAELCKLCVIIALAA WLRRKNEEDLQLFKDVIPMGLLTLLPFALVFIQPDLGNAIILIGVLIGMLWIGNVKYSHA LIGLIVFGGGLFVFFYFYSMHPKEISGYLIENFHFKQHWFKRIDTFLDPSTASLNDRYQM ENSYRAIGSGGLTGEGYLNGSSIHSNFIPYAYSDSIFVVVGEEFGFRGAAVLLMLYFFLI YRMILIAIQSKNRIGSYLVVGVVAMYVFQIFENIGMLIGLMPLTGITLPFISYGGTSLLI NMLCIGMVLSVKIHDHAIEDDK >gi|333607289|gb|AFDH01000038.1| GENE 3 1955 - 2749 833 264 aa, chain - ## HITS:1 COG:BH3027 KEGG:ns NR:ns ## COG: BH3027 COG2894 # Protein_GI_number: 15615589 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Septum formation inhibitor-activating ATPase # Organism: Bacillus halodurans # 1 261 1 261 264 393 77.0 1e-109 MGEAIVITSGKGGVGKTTTSANVGTALALQGKKVCMVDTDIGLRNLDVVMGLENRIIYDL VDVVEGRCRLPQALIKDKRFEELYLLPAAQTKDKHAVSPESVKDIVLELKKDFDFVIIDC PAGIEQGFRNAVAGADKAIVVTTPENAAVRDADRIIGLLENEKIHAPKLIINRIRQNMVK KGEMLDIDEICSVLAIDLLGIVPDDEHVIKAANSGEPTVMNPTSRAAIAYRNVARRILGE SVPLMPLDEKPGMLAKLKKFFKLG >gi|333607289|gb|AFDH01000038.1| GENE 4 2813 - 3457 612 214 aa, chain - ## HITS:1 COG:BS_minC KEGG:ns NR:ns ## COG: BS_minC COG0850 # Protein_GI_number: 16079852 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Septum formation inhibitor # Organism: Bacillus subtilis # 1 211 1 215 226 143 39.0 3e-34 MTTAGKHHVIIKGVKDGLNFLLDDSCELATVLEELRHKVESTHDRILTGPIVRVQVRLGK RSVSDEEKEEIRAIIGQKGNLLIQSIESDEPEPLVGTAAPITMLKGMVRSGQTLKHEGNL LYMGDVNPGGTILCTGSIYIMGSLRGMAHAGVDGDEAAIVAASHMRPTQLRIAGVISRPP DEWGFQEAFMEYAYIKDGRMEIDKLNGLHRMVLA >gi|333607289|gb|AFDH01000038.1| GENE 5 3536 - 4063 647 175 aa, chain - ## HITS:1 COG:BH3029 KEGG:ns NR:ns ## COG: BH3029 COG2891 # Protein_GI_number: 15615591 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell shape-determining protein # Organism: Bacillus halodurans # 1 164 1 163 174 80 34.0 2e-15 MVRNSLWLILFSLLILEGSLIHWLIPDSWQQSVRISSNFMLIIILYIGLYLNRHSALLYG LGFGLLHDFVYFGHILGVYSFGFGLVGYIAGLLPRRQTNLIFTTLMTMGVGVLIFEIIKF GINRLFNIVTVNFQFAFTHIMLPSVLLNMLFALAVYIPMRKLMEALQGQGSRAEH >gi|333607289|gb|AFDH01000038.1| GENE 6 4066 - 4944 1044 292 aa, chain - ## HITS:1 COG:BH3030 KEGG:ns NR:ns ## COG: BH3030 COG1792 # Protein_GI_number: 15615592 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell shape-determining protein # Organism: Bacillus halodurans # 3 287 4 277 293 231 43.0 1e-60 MKFMGNKRLMVLLVGLICFFILMGLTLSGRTKFYWPEKFLKDSIAWTQSVFYRPAAGVAG FFEDVGKLKTIYDENQILKKRLTDYALATQQLNALEDENKRYKEALGFTERQKQVSNYKY RIADVIAASPDPYNGTITVNLGEKDGIKPNMAVINVDGLLGRVLTVTEFTSNVQLLTDLS DTNNKAPAISATVKGKEYKSAEGQGSYGIIESYDKEKGLLVMNKIDQNDKLAVGDTVITS DIGKVFPSGIPVGTVVSREPGDFGITQKAMIKPFADFRHIREVFIIEIPEVK >gi|333607289|gb|AFDH01000038.1| GENE 7 4981 - 6012 1158 343 aa, chain - ## HITS:1 COG:BH3031 KEGG:ns NR:ns ## COG: BH3031 COG1077 # Protein_GI_number: 15615593 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Actin-like ATPase involved in cell morphogenesis # Organism: Bacillus halodurans # 1 338 1 337 346 509 80.0 1e-144 MFGGFTKDLGIDLGTANTLVYLKGKGIIVREPSVVAIRTDTKTIEAVGDNAKKMIGRTPG NIRAIRPMKDGVIADFETTATMIRYFLRQAQKDRFMFQRHPNVMVCVPSGITAVEKRAVE DATKQAGARDAYTIEEPFAAAIGADLPVWEPTGSMVVDIGGGTTEVAVISLGGIVTSRSI RIAGDEMDEAITQYIKRTYNLMIGERTAETLKMEVGSALPMEQPEFLEIRGRDLVTGLPK TISVTSDEITEALTDTVNAIIDAVKVTLEKCPPELAADIMDRGIVLTGGGALLRNLDKLL AGETGMPVIVADNPLDCVAIGTGRALDHIHLFKGAKSGAKYRR >gi|333607289|gb|AFDH01000038.1| GENE 8 6162 - 6851 527 229 aa, chain - ## HITS:1 COG:BS_ysxA KEGG:ns NR:ns ## COG: BS_ysxA COG2003 # Protein_GI_number: 16079856 # Func_class: L Replication, recombination and repair # Function: DNA repair proteins # Organism: Bacillus subtilis # 6 229 8 231 231 258 57.0 6e-69 MISSIVTLREIPPEERPRERMMQLGASSLSSAELLAILVRTGTYSESALALAQRILSETG GLRGLVEASREELVRIKGIGDAKALQVMAGIELGRRISRTRTEEITTVRSPFDVFDLLKD ELRYLQKEHFVCLFLNTKNHIIGRETLSIGSLNASIVHPREVFRAAIQRSSASIVCVHNH PSGDPTPSPQDIELTHRLTEAGDIIGIEVLDHIVIGDDRYVSLKEHGHM >gi|333607289|gb|AFDH01000038.1| GENE 9 7708 - 8163 419 151 aa, chain - ## HITS:1 COG:BH0306 KEGG:ns NR:ns ## COG: BH0306 COG1959 # Protein_GI_number: 15612869 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Bacillus halodurans # 1 132 4 133 143 65 34.0 4e-11 MNSEFTIAVHSLVLLAHLPEHMASSDDIASNVCTHSARIRKIMGCLRKAGFVRTKEGCGG GFILNHDPDEITLGDIYQLTSLGTLKPNWCSGDQGNECLVSANMQNVMDNMLDGAEQNMI QYLKGVTIGSMLRTLNETEKRAADAEKNLIS >gi|333607289|gb|AFDH01000038.1| GENE 10 8250 - 8876 801 208 aa, chain - ## HITS:1 COG:CAC1240 KEGG:ns NR:ns ## COG: CAC1240 COG0424 # Protein_GI_number: 15894523 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Nucleotide-binding protein implicated in inhibition of septum formation # Organism: Clostridium acetobutylicum # 13 207 1 199 199 155 43.0 5e-38 MSQDGSAPYEQGIKLILASSSPRRQELLKGMGLDFEIIASDADETVEESLGPREIVETLA VRKAEAVSASLPGSYAPDRTVIIGSDTIVVLGGEVLGKPKDERDALRMLSALQGQTHEVF SGVACLSADRRNVSVSHRRTKVTMKAMDEQRILRYIGTGEPSDKAGAYAIQGIGATLIEG IEGDYFNVVGLPVSLLSEMLEPFGIRVI >gi|333607289|gb|AFDH01000038.1| GENE 11 8929 - 9171 439 80 aa, chain - ## HITS:1 COG:no KEGG:BBR47_18300 NR:ns ## KEGG: BBR47_18300 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 1 80 26 103 104 75 48.0 6e-13 MKKNGFTLVLFLVIGLVVGIIVGQLLAPVKALAFLTKTTDIVWQPKADLQVIQYDILLQI KLNLCSIIGLAAAFWLYRKV >gi|333607289|gb|AFDH01000038.1| GENE 12 9320 - 10528 1201 402 aa, chain + ## HITS:1 COG:BS_lytC_2 KEGG:ns NR:ns ## COG: BS_lytC_2 COG0860 # Protein_GI_number: 16080615 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: N-acetylmuramoyl-L-alanine amidase # Organism: Bacillus subtilis # 27 214 8 180 182 140 40.0 5e-33 MKKTTKLAGLTLALLLVFPYEAMAYKVVVDPGHGGKDPGAIGVNGLNEKTVNLDVSLKLR DELKKKGVEVVMTRSDDRYLSLDERVQFTNAQNADVFVSVHANSNPSSTANGSQVLYYDS RYPQDDYPASPEMEALTPSSKLLAQKVLSSVLSQTGLKDQGLVPSAVYVVRKGKIPSILV ETGFLSNKKEADLLADPAFRTKMAKAIADGVVSYQPPVFPDTAGHWAREAILRIKDKGWM EGIGNYFEPNRALTRAEFVTVMDRVFGFDGLLGTGNSAPAPAFSDLKSTQWSYPVMTKAV RLGLLDGYADHTVRPNQAVTRGEVSAILQRLREMKGTPALTPPAGQDVFSDVPASMWCAG AVYTLTKAGIVDGTSPTEFKPNRYITRAEIAVMMDRYSKLQP >gi|333607289|gb|AFDH01000038.1| GENE 13 10590 - 12428 1263 612 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_1528 NR:ns ## KEGG: GYMC10_1528 # Name: not_defined # Def: sporulation domain protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 295 604 161 461 464 112 28.0 4e-23 MNKARISYRIDGNDRTNRKEDKSGGKIIPLTKEEFSVSEALWRDAEADRAKKARQNRRDT EAGPRNREGLNEYTADFGTWQSPYDAETERIAKLIRESEPGYRGDSGYFESTINERFREE KERRQEYEDLDRTSYKERRDEEAAARQLRDFEGPSEQEDEYTDDRFRENPAAGRGNSGER EREERYPLPPNLGWPEDPSGFIDHGTASLPGYNSLRAAEEDELEDAGYARPLNGGVPVPD TRERRTSGERDYYERQLAQAPPPGQNRSRNRNEYAYYEDEPPGYRREPVYEGPYNRLHWE EPEKSGVRISRSGRGGLLRIATSVAGAMVTGAAFGYFVLSMFSGGAEKPITIDAGPAATA QAQPSPGAVTPLKPDASAPAASAPSAGTAAVAAPPVGGPTAEASIPARSYTVLQNGIFST PQSAETARADARGKGAAAVAEPGTKTTVYVGLAGSKEDAAKLKAALAAKKIEVFAKPLDL PAVGKVYWKSGSAQPLADYLAQGAKVAGTAGSLSAAKMAETSPGAIDAASLQPLDAAAKA WAALQPAVAAGIPDAAKPQVEEMNAALAKAVAKLGEYGKSPSAPLLAEAQEALMQYVVAE KRLMQQLTAASA >gi|333607289|gb|AFDH01000038.1| GENE 14 12581 - 12898 330 105 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTLNNKRNSLPLLASILAVLGFFAFTSNLTNSNQSTTLYVFNPHVPLTEEQFKGLDIDVI SYNPPMDKFKITSYPTYVLVKTKTQELLGITNDFTELESLRKKSN >gi|333607289|gb|AFDH01000038.1| GENE 15 13034 - 14419 1838 461 aa, chain - ## HITS:1 COG:PA4411 KEGG:ns NR:ns ## COG: PA4411 COG0773 # Protein_GI_number: 15599607 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate-alanine ligase # Organism: Pseudomonas aeruginosa # 8 452 19 468 480 374 42.0 1e-103 MNTPEHVHFIGIGGYGMSAIAKVMLEMGYQVSGSDLAQQELTEKLRAKGARVYIGHEAQN VNGADLVVYSTALSKDNVEMVAAGEQNIPVIHRSQMLARLMNERKGIAVAGAHGKTTTSS MIALVMERCGTDPTYIIGGEIMNIGSNAKAGKGDYVVAEADESDGTFLQYHPTLALVNNI EADHLENYDGDFENLKKAYAQFLSQVREDGKAIICLDDEYLRGMLPQIKSETLTYAIDRD ADYVATDIELGDRKVSFSVRRGGETLGKVRLSVPGRHNVYNAMATLITCLEAGLTFDQIA EAIEEFRGAKRRFQVLGEVNDILVIDDYAHHPTEIEATISAAKATGKHLIAVFQPQRYTR TFYLFEQFSHAFKEADEVLITDIYSPAGEKQIEGISSEKLVELIRKNSNPNVTYIPTRGE AEVYLTDRVKPGDLVITMGAGDIWKTADGLAKTLRARYEAE >gi|333607289|gb|AFDH01000038.1| GENE 16 14428 - 15804 1303 458 aa, chain - ## HITS:1 COG:lin1586 KEGG:ns NR:ns ## COG: lin1586 COG0285 # Protein_GI_number: 16800654 # Func_class: H Coenzyme transport and metabolism # Function: Folylpolyglutamate synthase # Organism: Listeria innocua # 11 449 3 425 429 328 40.0 2e-89 MEQHTEAASPFKTYTEAVNWITGLVPVGIKPGLKRMDLLMEKLGHPHRRLKFIHVGGTNG KGSTCAFLTKVLIRSGYDVGTFTSPYLEKFTNRIQYNGQDIEEEALLLLANRLKPIADEL AETELGSPTMFEICTALALLYFGTVTFPDYVVLEVGLGGRLDCTNIVSPVISVITNIGHD HMDILGDTLEQVALEKAGIIKPGVPLVTTVEQPELAELFLRDAKSKRTTVYLLGKQFTYE PVSTELDDQKLNFTGPFRSIENVPISLNGAHQLKNAAAALMTLEVLRQYNALIVDDEDLF AAMSETQWPGRLEMVSDNPRILLDGAHNPEGAQTLAAALKDTYSYKKLHLMAGMLSTKNQ PGYFRHILPMVDTLILTEPDFHKKESASRLADRARETLRELDVNRDIDIVVEPDWKKALE QLKQRTGQDDLAVVSGTLYLISDVRSWLLYTTDSEKGW >gi|333607289|gb|AFDH01000038.1| GENE 17 15884 - 18550 3059 888 aa, chain - ## HITS:1 COG:BS_valS KEGG:ns NR:ns ## COG: BS_valS COG0525 # Protein_GI_number: 16079861 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Valyl-tRNA synthetase # Organism: Bacillus subtilis # 6 888 2 880 880 1269 68.0 0 MAETSDKNSVSMPTTYDPSQSEKKWYDYWISNGFFRAGQRPDAETYTIVIPPPNVTGMLH LGHALDFTLQDILVRTKRMQGYDALWLPGSDHAGIATQTKVEQKLREEGLSRYDLGREKF LEKVWEWKDLYAETIREQWAKMGFSLDYSRERFTLDEGLSKAVREVFVSLYNKGLIYRGK YIINWDPKARTALSDIEVEYKEIQGSLYHLVYPLKDGSGSITVATTRPETMLGDTAVAVH PEDERYKHMIGKMLVLPVVGREIPVIADEYVEKDFGSGAVKITPAHDPNDFEVGKRHDLP QILVMDESGTMNANAGPYQGLDRADCRKKIVADLQEQGVLVKIEEHVHQVGHSERSGAVV EPYLSTQWFVKMQPLAERAIEAQKNGSGVNFVPDRFEKIYLQWIENVRDWCISRQLWWGH RIPAWYCADCGEVTVAQQDAHACGHCGSENIRQDEDVLDTWFSSALWPFSTLGWPEQTED LQRYYPTNVLVTGYDIIYFWVARMIFSGLEFTDQVPFKDVLLHGLIRDSEGRKMSKSLGN GVDPLEIIEKYGADAMRYMLSTSSTPGQDLRFRIERVEQTRNFANKIWNASRFALMNLEG FTAADIDLSGKLGTADRWILHRLNETARDVTRLIDQYEFGETGRLLYNFIWDDLCDWYIE FSKLSLYGEDEAAKKTTKSVLAYVLDRTQRLIHPFMPFISEEIWQHLPHEGDTITLAAWP VYDAQFEAPEAVRDMELLMDIIRAVRNIRAEVNVPMSKKIELLVKPSSQDVETILSRNEE YLRRFCSTSELSISAELASPDKAMTAVVTGAELFLPLAGLIDIAQEVARLEKEMQTLIGE VTRIEKKLSNEGFIAKAPAKVIEEEKAKMADYADKRDKVVARLAELKA >gi|333607289|gb|AFDH01000038.1| GENE 18 19049 - 19213 179 54 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MQKWWWKTRFTVRGVLFPLICIQFVRTLIFPNGLDVFLLFVLFLAYLGFLLDVY >gi|333607289|gb|AFDH01000038.1| GENE 19 19286 - 20161 738 291 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKKLNKALVAALLLALLSPAFQPGQANAQAAVNQNARASFDQLANNVWGFLNEYLLPILT GGNQKFPVPKPEPKPDPTPVPTPVPTPVPDSGNGKGQNNGGGQGNGNGQDKGQDKNTDKG NQAGGNGKGNGQDKGNNGNNGNNGNNGNQGNGQGNGQGNGNNGNGNNGNGQGNNGNNGNN GNGGKDRDDRYDSINKETIQKLNALKSACQRDLVSYAMQFSRATTTHQKSTLYKEASERF AQCVSDFRDIVGSAQNTLQNEGFSTDIINQYQREYDLQMETGRMLLDTIVK >gi|333607289|gb|AFDH01000038.1| GENE 20 20205 - 20885 504 226 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNKRRRLFLWVGTGILITGMAGSFAAVRISDEMIRTAASLSIGQAADEADAAGKEAPEGR PVPGGGAPASPGADAQDGSRPQEAFPAVKAAPGSGKAPASAAPSARPDPGQAGHQAAGSA EEGSGSAKSRPKDPAAIPADRAERLSGEISWSERMKITSVLLKRLQASDIKQLSLLMKDG VSREEKKKAKAIIMAKLSESEYNELIAIAGKYGLSKGKSYQQSVNE >gi|333607289|gb|AFDH01000038.1| GENE 21 20882 - 21373 68 163 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_0418 NR:ns ## KEGG: Pjdr2_0418 # Name: not_defined # Def: VanZ family protein # Organism: Paenibacillus # Pathway: not_defined # 3 145 19 163 179 94 35.0 1e-18 MLWTLLVFHWSHQSFREQSIQPLLHKLFTKEEIHAYIPQVTVRYHHTIIRAQSDPMRFIE FIFRKTAHLVVYAVLAALAYQALSLWRSRRRKRALFSLLYVVAIAMGDEWVQSAAAMRTS AIQDVVLDTAGGLAGLSAAVWAAPWGIRLWRTSIRIKRREAGR >gi|333607289|gb|AFDH01000038.1| GENE 22 21396 - 22748 1648 450 aa, chain - ## HITS:1 COG:BS_tuaD KEGG:ns NR:ns ## COG: BS_tuaD COG1004 # Protein_GI_number: 16080611 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted UDP-glucose 6-dehydrogenase # Organism: Bacillus subtilis # 1 435 1 434 461 561 63.0 1e-160 MEKITVVGSGYVGLVSGTCFSEIGNRVICCDVDPFKIAMLRKGEIPIYEPGLKELVKKNV DADRLFFTSEIGDAIEASDIIYIAVGTPMGDNGEADMRYVHEVARTIGQHLNSYKIIVNK STVPVGTGEQVRQIIMENRKNRFVQFDVVSNPEFLREGSAIEDCMNMERAVIGATSDKAA KRIADLHAPFRTRIFQTNLESAEMIKYAANAFLATKISFINGIANVCERVGADVTSVAAG MGLDSRIGAKFLQAGIGYGGSCFPKDTFALSYIAEEAGFDFSLLKSVIAANDEQRLVVVD KLKQALGCLEGKKIGVLGLAFKPNTDDMRYAPSLTIIPELVRLGASVRAYDPIAMQAARN QIAEYYEDFETLEEALEGCDACLILTEWSEIVEMDLARVKQLLTAPIIVDGRNCFSVREM KEREFVYYSVGRPAVTTGSANASAAKTVSL >gi|333607289|gb|AFDH01000038.1| GENE 23 22750 - 23661 998 303 aa, chain - ## HITS:1 COG:BH3652 KEGG:ns NR:ns ## COG: BH3652 COG1210 # Protein_GI_number: 15616214 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose pyrophosphorylase # Organism: Bacillus halodurans # 1 291 1 291 297 439 74.0 1e-123 MKVRKAIIPAAGLGTRFLPATKAQPKEMLPIVDKPTIQYIIEEAISSGIEDILIISGRGK RAIEDHFDKSFELEETLDKKGKHGELKQIQAISDMANIHYIRQKEPKGLGHAIWCARSFV GNEPFAVLLGDDIVQSEEPCLKQLLRIHSRYSSSVVGVQRVSDEDVSKYGVIAPRGSSIE PDVFFLETLVEKPSRKAAPSNYAIMGRYVLTPEIFEILENQAPGAGGEIQLTDAIRRLNE QKPVVAYNFSGVRYDVGDKFGFIKATLDFALQREDLQQDLLGYIQSVHEQHAALHNPISK VAK >gi|333607289|gb|AFDH01000038.1| GENE 24 23700 - 24938 1215 412 aa, chain - ## HITS:1 COG:BS_yvfE KEGG:ns NR:ns ## COG: BS_yvfE COG0399 # Protein_GI_number: 16080476 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis # Organism: Bacillus subtilis # 36 306 4 274 301 362 66.0 1e-100 MAAQLQTHASPARAAQLQPGAAPGTADGLPGTGRSRILLSPPHIGEEEQKFVREAFETNW IAPLGPNVDAFEDELAAYTGSKGAVALSSGTAGIHEALRLLGVGPGDRVLCSSLTFVASV NPIAYQGAEPVLIDSDEATWNMSPAALERALAESKREGRLPKAAVVVNLYGQSADMVPLL ELLDAYGVPVVEDAAESLGATYSGKSSGTLGRFGVYSFNGNKIITTSGGGMLVSDDLEAL EKARFWATQARDQAPHYQHSEVGYNYRMSNILAGVGRGQLRVLDERVNARRAVFDRYREA LGAIEGITFMPEARYGRSTRWLTALTVDPALAGITTEELIARLAAENVESRPVWKPMHRQ PLYGKCAYYPHEEGTSVSDRLFEQGLCLPSGSSLSESDQDFVIGILLHALNA >gi|333607289|gb|AFDH01000038.1| GENE 25 25230 - 25865 673 211 aa, chain - ## HITS:1 COG:BS_yvfD KEGG:ns NR:ns ## COG: BS_yvfD COG0110 # Protein_GI_number: 16080477 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Bacillus subtilis # 1 208 1 207 216 164 45.0 2e-40 MRRLLLIGDGGHAKVVRDIARAGRQYELAAVLDDRYAVPASGADGLPRGPVALAARMLAE DEDLHVFVAIGSCAVRRRVAESLGAEPGRFALLIHPRAVVSGDASLAPGTAVMPGAVVNA GARIGAHAIVNTGAVVEHDCVIGDYAHVSPNAALAGGVDVGAGAHIGIGASVIQGLAVGE WSTLGAGAVAVRDVPAGCTAAGVPARVIRQA >gi|333607289|gb|AFDH01000038.1| GENE 26 25862 - 27655 1759 597 aa, chain - ## HITS:1 COG:BS_yvfC KEGG:ns NR:ns ## COG: BS_yvfC COG2148 # Protein_GI_number: 16080478 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sugar transferases involved in lipopolysaccharide synthesis # Organism: Bacillus subtilis # 396 589 5 198 202 257 63.0 4e-68 MSKIAHICTSAISHKILADKMSVLRQAGHEVHLISSPEGYDEQAMKNSGLKLKFVQMNRK IRPVEDVRSILRMRRLIKREGYDIVHTHTAKAGIIGRAAAWLARTPVIMHTSHGLPFYEG QSKTAYTVYRTLEKIGTYFCDALASQNREDMAKLQSLNAGKIVYYEGNGVDLDKLDKAAG RISREELETLKATYGVPQNKTVLLMGARMEPVKDHHFLLDALALLKSQGITDFVCLLAGK GPLEKQILERIAELSLQKEVLLIGHRSDLYAFLKMADIVVLTSEKEGIPRFLMEAMAFSK PVVASDVLGTRELVRHEDTGLLVPYKNTGALAKAFRTLIENKAYGTLLGQGGRRRIEQEF TEQIVVRRLETMYQELRTGTREKGRIGRWLGHTVLRTADLAIALPLVLLLLPVYAVVGLL VRMKLGSPVLFKQKRPGRFGQPFHVYKYRTMTDKRDSSGNLLPDEVRLTAFGKLLRKLSL DEIPQLLNVIKGDMSLVGPRPLLMEYLELYTDEQKRRHWVRPGITGWAQVNGRNAISWED KFKLDVWYVDNRSFRLYVKILLLTAVKVVRREGVSQEGQATTTKYTGSAASGIGSPS >gi|333607289|gb|AFDH01000038.1| GENE 27 27692 - 28051 387 119 aa, chain - ## HITS:1 COG:BH3709 KEGG:ns NR:ns ## COG: BH3709 COG0451 # Protein_GI_number: 15616271 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Bacillus halodurans # 1 117 217 333 343 169 65.0 2e-42 DFTYIDDIVEGIVRLLDRPPAPNKDWDRENPDPSTSYAPYKVYNIGNNSPVELMTFIRTL EESLGTRAEIEFKPMQPGDVQATFADIDALQRDVGFRPSTPISEGLRKFADWYVGYYGS Prediction of potential genes in microbial genomes Time: Sun Jul 17 08:32:12 2011 Seq name: gi|333607267|gb|AFDH01000039.1| Paenibacillus sp. HGF7 contig00078, whole genome shotgun sequence Length of sequence - 23313 bp Number of predicted genes - 19, with homology - 18 Number of transcription units - 10, operones - 5 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 98 - 1483 892 ## COG3664 Beta-xylosidase + Term 1508 - 1544 3.1 + Prom 1599 - 1658 1.8 2 2 Op 1 . + CDS 1699 - 2940 1122 ## COG1455 Phosphotransferase system cellobiose-specific component IIC 3 2 Op 2 . + CDS 2970 - 5255 1824 ## COG1472 Beta-glucosidase-related glycosidases + Term 5263 - 5296 5.4 - Term 5244 - 5290 9.5 4 3 Tu 1 . - CDS 5423 - 7021 1899 ## BMD_2948 hypothetical protein - Prom 7176 - 7235 6.8 + Prom 7535 - 7594 4.3 5 4 Tu 1 . + CDS 7661 - 8242 456 ## + Term 8415 - 8480 6.7 - Term 8564 - 8608 10.8 6 5 Op 1 . - CDS 8737 - 9219 686 ## COG2210 Uncharacterized conserved protein 7 5 Op 2 1/0.000 - CDS 9299 - 10081 885 ## COG0730 Predicted permeases - Prom 10214 - 10273 6.0 - Term 10426 - 10462 2.2 8 5 Op 3 2/0.000 - CDS 10486 - 10713 417 ## COG0425 Predicted redox protein, regulator of disulfide bond formation 9 5 Op 4 2/0.000 - CDS 10773 - 11933 1145 ## COG0491 Zn-dependent hydrolases, including glyoxylases - Term 12037 - 12072 2.5 10 5 Op 5 . - CDS 12081 - 12659 587 ## COG0425 Predicted redox protein, regulator of disulfide bond formation - Prom 12785 - 12844 4.0 - Term 12985 - 13032 10.1 11 6 Op 1 3/0.000 - CDS 13071 - 14045 918 ## COG0346 Lactoylglutathione lyase and related lyases 12 6 Op 2 . - CDS 14071 - 14520 492 ## COG1846 Transcriptional regulators - Prom 14543 - 14602 4.3 13 7 Tu 1 . - CDS 15068 - 16852 1548 ## Bcell_3812 hypothetical protein - Prom 17045 - 17104 8.1 - Term 17128 - 17178 8.6 14 8 Tu 1 . - CDS 17200 - 18093 770 ## COG4257 Streptogramin lyase - Prom 18155 - 18214 3.3 15 9 Op 1 11/0.000 - CDS 18358 - 19740 1503 ## COG0477 Permeases of the major facilitator superfamily - Prom 19761 - 19820 1.8 16 9 Op 2 . - CDS 19848 - 20444 613 ## COG1309 Transcriptional regulator - Prom 20529 - 20588 4.9 - Term 20681 - 20726 12.0 17 10 Op 1 1/0.000 - CDS 20797 - 22098 1784 ## COG0213 Thymidine phosphorylase 18 10 Op 2 9/0.000 - CDS 22283 - 22990 869 ## COG0813 Purine-nucleoside phosphorylase - Term 23012 - 23041 0.4 19 10 Op 3 . - CDS 23045 - 23311 364 ## COG1015 Phosphopentomutase Predicted protein(s) >gi|333607267|gb|AFDH01000039.1| GENE 1 98 - 1483 892 461 aa, chain + ## HITS:1 COG:BH1068 KEGG:ns NR:ns ## COG: BH1068 COG3664 # Protein_GI_number: 15613631 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-xylosidase # Organism: Bacillus halodurans # 1 433 42 456 502 281 34.0 3e-75 MQRSLAFTHIRFHGIFNDEMMVYSETEDGKAVYNWSYVDKLYDFLLQAGIRPFVELSFMP TLLRRSRETIFWWKGNIAPPADPDKWNSLVREFVRHCLNRYGLEEMKNWYFEVWNEPDLT GVCWAGTKEEYFEFYKSTACAIKDVATELKVGGPALGYGSIWNDTWAEDFMAYCLENNVP IDFFSFHVYSEYPNKKDEKDKLTTIMPPSFYADSIKRLRTQIGSDRMPALELHMTEWNFS LYDRNYIHDTMFMAAFVIHQSFLTLGTLTSIAYWSFTDVFEESQVPVSLFYGGFGLITRS GLKKPSYYALELLNKLGEKLITYGEGYIVTSRADGSIQVLMYHYTHVDQLYASGDRSGLT EKNRYTIFEEKGDKALHLKLNGLKGNYKMTSYRLDREHGSVFDEWLRLGMPVYLTEEELL FLGNKSGPVLQTELLTDVDSYEGTFILPPHGVMLVTFTRQY >gi|333607267|gb|AFDH01000039.1| GENE 2 1699 - 2940 1122 413 aa, chain + ## HITS:1 COG:BS_licC KEGG:ns NR:ns ## COG: BS_licC COG1455 # Protein_GI_number: 16080909 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Bacillus subtilis # 1 408 1 435 452 142 27.0 1e-33 MDRLMKWMAEKFAPRINAFTKNVWVDSIQEAIMVTLPMIFIGSLITLVSILKDFIPGMPN LTPITTFSFGLLGIFISFLTPYMVMQKKERHKIKLISGATGLSLFLMLLNPKFGDDGTVQ FVLERFGPSGMITALLVGITVAVVINAFNRFSWFKKDTNLPEFIVDWFDFLVPIALILTF GWVLIYQLNFDIFELIVGLFQPLNTISQSLAGFVLFNFVGVLLYSFGVSPWVITPILYSI WIPAIEENAKLAAQGMAPVNINTFETFFSGWVGVGGLGATLPLVIWFLFAKSRKLNSIGK ATIVPSLFNINEPVIYGAPIAFNPILMIPMWINGIITPIIVYLTLDLGLVDIPSKVFQLW YTPMGLSTYLLSGFKGLLLLAVVLLVVFVVWFPFFKVYDMQELKKEQNEIPQE >gi|333607267|gb|AFDH01000039.1| GENE 3 2970 - 5255 1824 761 aa, chain + ## HITS:1 COG:YPO2803 KEGG:ns NR:ns ## COG: YPO2803 COG1472 # Protein_GI_number: 16123001 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase-related glycosidases # Organism: Yersinia pestis # 4 659 30 705 793 461 37.0 1e-129 MNPSTETLLKELTLEEKAALCSGLNMWMTKGIERLDIPSIHMYDGTNGIRKTNSDEEMGI TGENIPATCYPTGSAIGSSWNTELLHEVGVALGAESKQMGVELLLGPGINMKRTPLGGRN FEYYSEDPCLSGELGAAFVNGLQSQGVGASVKHFACNNQEYEKMVTSSEVDERTLREIYL SAFERIVKKSNPWTIMCSYNLVNGSYASENEHLLHHILREEWGYEGVVLSDWTAVNDRLR GLKAGLDLEMPGPAQYNTNAIVEAVRNGQLSEAQLDKAVRRILELVRKTIGTGSGNEKQH PIADYHALARKAAAESMVLLKNDNHILPIDPAKVSSIAVIGKFAKQPRIQGAGSAKVTPT HVDIPWEEMAKVAGDSVSFTYAEGYPQDDSVDENLIRESAELAAKTDMAVLFVGQPEYAE SEMHDLDGIELPLHQIKLIEAVSAVQPKCIVITSSGTALAMRPWVHHVPGILHSWLTGQG SGRAIAEILFGRINPSGKLSETFPVKLSDNPSHMRIRGENGKLYYREGLFIGYRYYDKKE IAPQFPFGHGLSYTTFAYSNLKAVQNGGTVKVTFSVENTGAMYGKEVVQLYVHDEECKWV RPEKELKAFAKLALHPGQKKDVSFTLEERDLAYYNTKYNKWVAETGYFQFALGSSSRDIR IRERVYCDFGKEVIALHKFSLLSDWLGNPTAKSVLVESLEEMNAHVSDKVYLNEEFVGFW GDFPVIKIFQMFGQSWLADTSPDQLLDQLIQSFEHKRRTEL >gi|333607267|gb|AFDH01000039.1| GENE 4 5423 - 7021 1899 532 aa, chain - ## HITS:1 COG:no KEGG:BMD_2948 NR:ns ## KEGG: BMD_2948 # Name: not_defined # Def: hypothetical protein # Organism: B.megaterium_DSM319 # Pathway: not_defined # 4 406 6 403 447 444 60.0 1e-123 MQMKKLLVPALSLSILMPTVAANAATVVNTPKPTVNTPAADLRASLDHLLSEHFALAVTA MTKAYDGSADAAEAYKALDQNAMDMTPAIASLYGKEGAAEFERIFRAHNKYTDDLVKATK MNNQEARKKAEQQVQGFVDEFSAFLDKATAGKLPKQAAAQAIRLHEDQVQETFDDYIAGD YQGAYAAYREGFKEMFTISKALSTAIATQMPEKFNNTKADTPAADLRSALNNLAAEHLAL STLQMQKQYDGSKDSDALIKAESGNTADFKAAISSIYGAEGGMAFEKIWVTNHVNAQSDY VTAVKNKDEAAKAAVEKRIDGFTTEFANFLGTATAGNLPAAAAQDVLRQHEGQVQKVLNE YAAGNYEASYKTDREGFKLMFGVGQALGNAIVTQYGEKFQEKADPSMTTVWMQIGSHDLN INGTVTKMDTTPFIWNDMSYIPLRYLAEGIGAEVTWDNEAQSVWVKAGSDKMQFWIGKDF MELNGMKKNIGSKVFVNADGRTVLPLRFITELLGWDVKWGQQDRSITLTKSM >gi|333607267|gb|AFDH01000039.1| GENE 5 7661 - 8242 456 193 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNKKVIIGITTLAAVVISSTVVYAANTTTGTTPADTARSFTEKYPAAVSSEASSKSVPYK EFSDASVYSKLETSWNKAIQALGTSSSDSNQPAAFAQEQWNLIAGPDIEAEFESKLSRNE ASSFNEVFITAARGLKPGDLMYALLLKGNKAEAKVVWQRANGDIHVSHLRQSKDLHGNAV WSLIGSEEIASAG >gi|333607267|gb|AFDH01000039.1| GENE 6 8737 - 9219 686 160 aa, chain - ## HITS:1 COG:BS_yrkE KEGG:ns NR:ns ## COG: BS_yrkE COG2210 # Protein_GI_number: 16079707 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 1 160 1 160 160 242 76.0 2e-64 MEEQKEGTTIVLFSGEMDKAIAAFIIANGAAAYDHEVTIFFTFWGLNALRKDEPVKLKKG WLENMFGRMMPRGPKKLGLSKMNYMGMGPKMIQHVLKKHNALTLPQLIELAQEQGIKLVA CTMTMDLLGLQKEELLDGIEYAGVAAYLGDASQAKVNLFI >gi|333607267|gb|AFDH01000039.1| GENE 7 9299 - 10081 885 260 aa, chain - ## HITS:1 COG:BS_yrkJ KEGG:ns NR:ns ## COG: BS_yrkJ COG0730 # Protein_GI_number: 16079702 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Bacillus subtilis # 6 259 9 261 261 190 47.0 3e-48 MLAVIMLALGLAGSFFSGLLGIGGAIINYPLLLFVPPLFGEAAFTAQEVSAISMFQVFFA SLSGVLFQRRGRNGPSLVHKGLVLYMGGGVLAGSLIGGLASKYMPGDTINVIYGVLAVIA VVLMLIPVRGKRREEGSGLSFNKPLAVLSALAVGLVSGIVGAGGAFILIPIMLTLLKIPT RTTIASSLAIVFISAVGGVIGKIGAGHIPLLPVIFTVMGSLLGAPLGSRISARINVKYLR YALIVLIAATAFKIWLPILL >gi|333607267|gb|AFDH01000039.1| GENE 8 10486 - 10713 417 75 aa, chain - ## HITS:1 COG:RSc0810 KEGG:ns NR:ns ## COG: RSc0810 COG0425 # Protein_GI_number: 17545529 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted redox protein, regulator of disulfide bond formation # Organism: Ralstonia solanacearum # 1 75 1 75 75 90 48.0 1e-18 MEVNVTVDTKGMACPMPIVKAKKALDSLESGGIMQVLSTDKGSLNDFQAWVKQTGHELIK HEEDNGVYTFYVRKK >gi|333607267|gb|AFDH01000039.1| GENE 9 10773 - 11933 1145 386 aa, chain - ## HITS:1 COG:BS_yrkH KEGG:ns NR:ns ## COG: BS_yrkH COG0491 # Protein_GI_number: 16079704 # Func_class: R General function prediction only # Function: Zn-dependent hydrolases, including glyoxylases # Organism: Bacillus subtilis # 90 383 2 294 295 444 72.0 1e-124 MNTSNREEGRLRGLTAAALAEKVLSNEPLFILDVRNESDFADWKIEGNRVDMLNVPYFEL LDGVEAVTDKIPTDREVLVVCAKEGSSKFVGEQLVDAGFSDVSYLVGGMKSWSEHLEPVK VGDLKDGGAVYQFVRIGKGCLSYMVISGGEAVVFDAVRMTGVFTDFAREKQAVIKHVLDT HLHADHISGGRKLAAETGAAYWLPPKDAEEVVFGYSELEEGADITVGSTRIAIQPLYSPG HTIGSTSFVVDDRYLLTGDILFVASIGRPDLAGKAEDWAGDLRSTLYDRYKKLSEELIVL PAHFGRFAELGEGGRVSARLGDLFANNPGLNIGDEAEFRKTVSENLPPQPNAYQEIRQTN MGKITPSEEEQREMEIGPNRCAVHDQ >gi|333607267|gb|AFDH01000039.1| GENE 10 12081 - 12659 587 192 aa, chain - ## HITS:1 COG:BS_yrkF_1 KEGG:ns NR:ns ## COG: BS_yrkF_1 COG0425 # Protein_GI_number: 16079706 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted redox protein, regulator of disulfide bond formation # Organism: Bacillus subtilis # 8 89 7 88 105 101 54.0 7e-22 MNIQTHQILDAKGLACPMPIVRTKKALEQMDSGQVLEVQATDQGSLADIRSWAKTTGHQY LGSTQEGEVLHHFIRKSDPSEVKEERKFPYTATNDELERSLREKPQTNVLDVREPAEYAF GHIPGAVSIPLGELEQRIGELNAQEELYIVCRTGSRSDMAAQLLERQGFKHIRNVLPGMS VWTGPLEKSAGI >gi|333607267|gb|AFDH01000039.1| GENE 11 13071 - 14045 918 324 aa, chain - ## HITS:1 COG:BH2175 KEGG:ns NR:ns ## COG: BH2175 COG0346 # Protein_GI_number: 15614738 # Func_class: E Amino acid transport and metabolism # Function: Lactoylglutathione lyase and related lyases # Organism: Bacillus halodurans # 3 321 6 324 327 428 65.0 1e-120 MELKGIHHVSAITAQAPENFEFYTKVLGLRLVKKTVNQDDISVYHLFYGDEKGSPGTELT FFEIPMAARNREGVSSISAASLRVAGDEALSWWKKRFAEFGVDHDEIQDRAGRATLAFRD FEGQRLILVSDQHNTGVEGGTPWDRSPVPAEYGILGLGPVKLTVQDPEPTVIVLTELLGF REKGRYAADVPGQPDIVVYETGEGGSGAEVHIEPRNDLSREQLGRGGVHHVAFRVDNEEE LHAWIKRVRQVRFPNSGFVDRFYFRSLYFREPNGILFELATDGPGFDTDEDIRHLGESLA LPPFLESKRPQIEAGLKPLHTKAD >gi|333607267|gb|AFDH01000039.1| GENE 12 14071 - 14520 492 149 aa, chain - ## HITS:1 COG:BH2176 KEGG:ns NR:ns ## COG: BH2176 COG1846 # Protein_GI_number: 15614739 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus halodurans # 12 130 4 122 145 126 56.0 1e-29 MEENKREPLLSKQEEKLGVLIWFRLSRVYNQSIRQSNQHLKAWNLSAAQFDVLAQVGSHE RLTQQELADKLLVTKGNITQLLSKMEELGWIRREQEWKTKYISLTAEGQALFDEAVPQQE QFQASQFGALDREEKKQLLELLKKVQKQS >gi|333607267|gb|AFDH01000039.1| GENE 13 15068 - 16852 1548 594 aa, chain - ## HITS:1 COG:no KEGG:Bcell_3812 NR:ns ## KEGG: Bcell_3812 # Name: not_defined # Def: hypothetical protein # Organism: B.cellulosilyticus # Pathway: not_defined # 51 586 150 682 815 69 17.0 5e-10 MKNIWIRNLLAFSLLTGMAYTSFMTPEAAAESSRTSAVHGYTVQSGTIREAEGMTSAAPF RADGMNLASHEKDENVNHIGLKELGIFAGILFVIYQSIRVFRQWKRKEKLLREAQAYSTD LYRDSERLGLLADLYKGPSAEKRIRPVEAELKDVSSILDEMTGMISGIKISFIGNVKTLE ETMGECRVLLRQYQGVYGSLKGSIDRLCELEKQNDKVVSELQAKIESLLARAKDRSAAYR VDDLEEELLSLQKRIGIIDREQMSDFIDVQEHLAPEREQLTEIERLLAELPELHNRQQKF KGQIVSARDDVNRSIREHGLDSSDLTSFASLDRAEALSVAMLEALNAGRIREAERISSDV TGLIKHSIAAAGELAELRESLTKTLRLLKSGIRELDFPESAFKEEQKRVKAYFAESVWSF MRSEFDQFTVLFREITQKLPEVENLLAEGRFNEGGKKLIALMEQYELAEKKHARLQVYEA ANKELNGLRESVHACWMDFQETVSFISSEGLEEALHSRDLGDLKYKIHDRKEMIDRRMSS PPIQLDRIKRDAEAMTTDVQAYRARVEQIADQQEEYEDEEEEERKSVVINVNFK >gi|333607267|gb|AFDH01000039.1| GENE 14 17200 - 18093 770 297 aa, chain - ## HITS:1 COG:RSc3155 KEGG:ns NR:ns ## COG: RSc3155 COG4257 # Protein_GI_number: 17547874 # Func_class: V Defense mechanisms # Function: Streptogramin lyase # Organism: Ralstonia solanacearum # 7 292 39 339 392 119 29.0 5e-27 MSYTFEEFALPDKDSGPYGLTAGKDGAIWFTEQKGNRIGRIAPDGTITEYPVTAEDAGLS VILSAADGALWFSGYKAGIIGRIRLTGEITEFSLPTADSGPFGLAEGPDGAVWFTEMTGN KIGRITEDGTITEYGLPLPGAFPSFIARGSDGAMWFTENQGNRIGRITSAGEITGYRLPS EQAGPVGITAGPDGALWFAEINGNRIGRISTTGGITEYPLPEPGARPHAITAGTQGDLWF TEWGGNKIGRINTAGELSEYAIPREKAEPHGLVVGPDGAVWFAQESGQIGRLTVRSF >gi|333607267|gb|AFDH01000039.1| GENE 15 18358 - 19740 1503 460 aa, chain - ## HITS:1 COG:BH1966 KEGG:ns NR:ns ## COG: BH1966 COG0477 # Protein_GI_number: 15614529 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus halodurans # 10 442 9 443 459 385 50.0 1e-106 MSTAVQKTTGDKIMRVLAFTLVISVMNASIFNIVLPQISAEFHLNSAQVSWVASIYMLVY AIGSVIYGKLADKYPLKRLITFGLIVFALGSVIGLSATAYWMVILARGFQAVGSSVIPAA AMIIPIRFFPPETRGRALGISAIGMALGNALGPVLSGLIMSVADWRWLFCLSLLTLVTLP FYRKLLDDKRGTAGKIDAWGGAFLAGTVSLLLLSITNGGWITVISGIVLLGLFILRIMKA EEPFIQPRLFMNKHYVTGLIVSLLIVGIGFSLSFLIPQLMSHVNHIEPGLIGFMMVPGAA ASAMMGLRGGRLADEKGNSFLVYLASFLLFISFVLLSSLSGALPALVSALLIFGNVGMTF MQIALSNTISRSLARDQVGVGMGLMAMMNFIGIASSSAIYSKLLDNGATVTWNPFNLYQG ASVYSNIYLGLAVLVLAAAGIYFYRFGRTPASAAPRKAEA >gi|333607267|gb|AFDH01000039.1| GENE 16 19848 - 20444 613 198 aa, chain - ## HITS:1 COG:BH1965 KEGG:ns NR:ns ## COG: BH1965 COG1309 # Protein_GI_number: 15614528 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus halodurans # 9 198 8 196 196 238 61.0 5e-63 MSGSSSSSSSDKLLLAAIDLIADRGYKCVTTKEIAAAAGLSEMTLFRHFGSKQNLLESAF DRFHYAGEMQKLFTEKLVWELETDLLLISRTYHEIMNRNRKMIQISLRESGSLPGFREKT QKHPRHLREFLTDYFVKMAERGKMVSTNPDLQAVSFMWMNYGAFMNNREGWGEGTFADVA LDDFIRESVKMFVRALTP >gi|333607267|gb|AFDH01000039.1| GENE 17 20797 - 22098 1784 433 aa, chain - ## HITS:1 COG:lin2101 KEGG:ns NR:ns ## COG: lin2101 COG0213 # Protein_GI_number: 16801167 # Func_class: F Nucleotide transport and metabolism # Function: Thymidine phosphorylase # Organism: Listeria innocua # 1 433 1 433 433 597 75.0 1e-170 MRMVDLIAKKRDGKELTTEEINFIIEGYTKGDIPDYQVSALAMAIYFKDMTARERADLTM AIVNSGETIDLSAIEGIKVDKHSTGGVGDTTTLVLAPLVAALDIPVAKMSGRGLGHTGGT IDKLEAIEGFHVEISKDEFVSLVNEHKIAVIGQTGNLTPADKKLYALRDVTATVDSIALI ASSIMSKKIAAGSDAIVLDVKTGAGAFMKTPEDAKELAHAMVSIGNNVGRKTMAVISDMS QPLGAAIGNALEVREAIDTLRGQGPKDLEDLCLALGRQMVFLANKASSLEEAEEKLKEVI RNGKALEKFKEFIANQGGDASVVDDPEKLPKAKFLIEVPAREDGVVAEIVADEIGTAAML LGAGRATKESEIDLAVGLMLNKKIGENVKAGESLVTIHANRENVDDVIAMIYDNIRISDH AESPVLIHDIVTE >gi|333607267|gb|AFDH01000039.1| GENE 18 22283 - 22990 869 235 aa, chain - ## HITS:1 COG:lin1970 KEGG:ns NR:ns ## COG: lin1970 COG0813 # Protein_GI_number: 16801036 # Func_class: F Nucleotide transport and metabolism # Function: Purine-nucleoside phosphorylase # Organism: Listeria innocua # 1 233 1 232 233 321 69.0 7e-88 MSVHIGAKPGDIAETILLPGDPLRAKYIAETYLSDVICYNEVRGMLGFTGTYQGKRVSVQ GSGMGIPSISIYVNELVSQYGVKNLFRVGTCGAMQEHVRVRDVILAQASCTDSSANRHVF GGFDYSPIASFPLLKAAYERGVEKGLKLHVGNIFSSDIFYRDDKTVVQKLMDYGVLGVEM ETTALYTLAAKFGANALTILTVSDHLLTGEETSSEERQTTFNEMMEVALDTAISL >gi|333607267|gb|AFDH01000039.1| GENE 19 23045 - 23311 364 88 aa, chain - ## HITS:1 COG:lin2068 KEGG:ns NR:ns ## COG: lin2068 COG1015 # Protein_GI_number: 16801134 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphopentomutase # Organism: Listeria innocua # 1 88 307 394 394 139 77.0 1e-33 DARLPEVFAKLTDEDLLIVTADHGNDPTYRGTDHTREYVPLLVYSPRFADGGKELPLRRT FADIGATVADNFGVTLPAHGKSFLADLK Prediction of potential genes in microbial genomes Time: Sun Jul 17 08:32:42 2011 Seq name: gi|333607254|gb|AFDH01000040.1| Paenibacillus sp. HGF7 contig00083, whole genome shotgun sequence Length of sequence - 9775 bp Number of predicted genes - 11, with homology - 10 Number of transcription units - 7, operones - 4 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 18/0.000 - CDS 43 - 1668 1887 ## COG0477 Permeases of the major facilitator superfamily 2 1 Op 2 . - CDS 1687 - 2151 358 ## COG1846 Transcriptional regulators - Prom 2211 - 2270 9.3 + Prom 2166 - 2225 9.0 3 2 Op 1 . + CDS 2349 - 3704 915 ## COG0642 Signal transduction histidine kinase 4 2 Op 2 . + CDS 3755 - 4063 211 ## + Term 4161 - 4206 10.2 - Term 4149 - 4194 10.2 5 3 Tu 1 . - CDS 4216 - 5376 1376 ## COG0475 Kef-type K+ transport systems, membrane components - Prom 5517 - 5576 7.8 + Prom 5576 - 5635 4.8 6 4 Op 1 . + CDS 5663 - 6217 702 ## COG0681 Signal peptidase I 7 4 Op 2 . + CDS 6254 - 6841 393 ## COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family + Term 6988 - 7016 -0.6 - Term 6851 - 6898 9.8 8 5 Tu 1 . - CDS 6945 - 7412 349 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - Prom 7483 - 7542 7.3 + Prom 7685 - 7744 4.4 9 6 Op 1 14/0.000 + CDS 7871 - 8437 423 ## PROTEIN SUPPORTED gi|163764797|ref|ZP_02171850.1| ribosomal protein L29 10 6 Op 2 . + CDS 8469 - 8984 470 ## PROTEIN SUPPORTED gi|163764798|ref|ZP_02171851.1| ribosomal protein S19 + Term 8990 - 9028 2.2 - Term 8959 - 9001 0.5 11 7 Tu 1 . - CDS 9034 - 9774 520 ## COG3314 Uncharacterized protein conserved in bacteria Predicted protein(s) >gi|333607254|gb|AFDH01000040.1| GENE 1 43 - 1668 1887 541 aa, chain - ## HITS:1 COG:BS_yusP KEGG:ns NR:ns ## COG: BS_yusP COG0477 # Protein_GI_number: 16080340 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus subtilis # 5 539 1 533 541 623 69.0 1e-178 MGEPLKLKQDGQEMTKHRGMLIAGLIIAMLFGALEGTIVGTAMPRIVGELGGLGYMTWLT TAYMLTSTAVVPIAGKLADLLGRRVVYVTGLIIFMVSSALCGTTDSMAQLIVYRGIQGIG GGIMMPMAMIIIGDLFTGKERAKWQGVFGGLYGLASVIGPQIGGWIVDGLNWRWVFYINL PVGIIAVIFIAMGLSKHKTQGPVKFDVAGMFTMIVGVVSLLLGLSFGGSEYPWLSWQIIS LFVLAVIAITAFIIIESRTEEAILPVRLFKNRTFTVLNGIGFLMSIGMFGAIIFVPLFMQ GVVGVSASASGTIMTPMMVTMIIASIIGGQIVYKIGPKVQISIGMIVMAAGFLLLTTMSI DTTKLTATLIMLIIGLGMGLVMPILTLVLQESFPKSELGVVTSSSQFFRSIGGTFGMTIL GAIMNHKSTSQLTDTLVPVLQKLPEQAKELTTKFTEMIHTNPQGLYTFLFSPEAMKEMPA EFLKTIAPILKNSLVSSLHSVYLFALIFIVLGAVLTVAVPKIKLTERKKTDPAGKAEPAA E >gi|333607254|gb|AFDH01000040.1| GENE 2 1687 - 2151 358 154 aa, chain - ## HITS:1 COG:BS_yusO KEGG:ns NR:ns ## COG: BS_yusO COG1846 # Protein_GI_number: 16080339 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 1 150 1 151 155 80 32.0 1e-15 MLDNEDYVARILRATMSFYRRIGPQMSHFKEMGLTGPQFHVLNWISETGPGKITKLAEMM EVKPSAITVMIDRMEQNKLVVRHHDENDRRVVMVSLTEHGQSVLKEAKLKSFEVIKQYYS RLDQDELESLMKISEKLQNIAGNEDDTNGKCCKS >gi|333607254|gb|AFDH01000040.1| GENE 3 2349 - 3704 915 451 aa, chain + ## HITS:1 COG:BS_resE_4 KEGG:ns NR:ns ## COG: BS_resE_4 COG0642 # Protein_GI_number: 16079368 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Bacillus subtilis # 223 446 39 266 269 125 32.0 2e-28 MRTTINQHRKPVWIGSLLGLLTACILIGQAYAFLWTEQQKANSRNHLFWDSYLNAMYGVD KNWSSVIKQLKEDSDPQRLAGEAGLRLYNADQKLLFDAAASSSSDKEDPAAGRIDLRTVK DGNRTLGYYSLPAAPFHHPEPPFWAAVLAGSLLVGAAAGLYLKRGDNRLQAVLDRILFRL AVLAREDGSEPSFRRGKENGGTDINARTAEADALLTGIEDKLRQMETVRPRMVADLTQEL RRPLTVLRSSLEQAQIEEKRLTTDKAAALFEEVSRMSALVNDMQQLMLAESGHLELERQW FSLRASLDPLIARLETEARASGIELRYSPSREVSLYGDRHKLEQAFGHLLGNAVRLARSS ASVSVTVNDLEVTVTVRDDGAGLTHDEIPHLFERFYRTAYPSAAAASEPGLGFGMALVKQ YVEAHNGSVRVTSEAGQGTSFTVRLPIFTGT >gi|333607254|gb|AFDH01000040.1| GENE 4 3755 - 4063 211 102 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSYLKLLQIYENDGMTPKRATSFRYDQMLGTILQEMKPTEVGSSMVLCRVDDFRSFQTTR VQAIDRDGAEFRVLTRNTIYHFEVVESRNVSPASRRALCETS >gi|333607254|gb|AFDH01000040.1| GENE 5 4216 - 5376 1376 386 aa, chain - ## HITS:1 COG:PAB1247 KEGG:ns NR:ns ## COG: PAB1247 COG0475 # Protein_GI_number: 14521863 # Func_class: P Inorganic ion transport and metabolism # Function: Kef-type K+ transport systems, membrane components # Organism: Pyrococcus abyssi # 2 374 3 379 380 218 39.0 2e-56 MLIFQLAIILLASKLAGDISVRLGQPSVLGKLLIGIVLGPNLLGLVSNTDVLQEISQIGV ILLMFIAGLETDTEEFKRTGKASGYVGIAGIIVPFGLGYLAGILLNQSPLEASFLGLLLS ATSVSISVQALKEMGKLKSREGTTILGAAVIDDVLVIIALAFLMSMAGGDVNLGLIVVKK VVFFAAALLFAWKAVPWILKKFAPLRVTETVLSAALIICFGYAYFAEYAGVAAIIGAYIA GVAISLTNYKHEVFEKVETISYSIFVPVFFTSIGITVQFQGISSSIGLIVILSLLAIATK LAGSAIGARLAGFKWRSSLAIGAAMVSRGEVALIIAAIGQESGLLSEEMFAVIVVVVLVT TIVTPPMMKLFFSEKSAPAAARNTAE >gi|333607254|gb|AFDH01000040.1| GENE 6 5663 - 6217 702 184 aa, chain + ## HITS:1 COG:BS_sipT KEGG:ns NR:ns ## COG: BS_sipT COG0681 # Protein_GI_number: 16078505 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal peptidase I # Organism: Bacillus subtilis # 10 183 23 181 193 98 34.0 5e-21 MKIFKEAMGWAGSIGVSFVLVLFIGIFVFQPYKVDGHSMEPTLQDEERIYISKLVHTLAQ EPAYGDIVVIDSRVDRPRTFKDSFMEQPVIQLITGSANERTFYVKRVIGKAGDVLEFKDH QVYRNGQVLEEPYIKETMEFVSDHKWTVPEGHVFVMGDNRNHSDDSRKIGFIPLDHVMGV KKLP >gi|333607254|gb|AFDH01000040.1| GENE 7 6254 - 6841 393 195 aa, chain + ## HITS:1 COG:MA0328 KEGG:ns NR:ns ## COG: MA0328 COG1853 # Protein_GI_number: 20089226 # Func_class: R General function prediction only # Function: Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family # Organism: Methanosarcina acetivorans str.C2A # 21 175 12 162 190 71 28.0 9e-13 MAAETGKGVIMRTPTDDQAWYSYPGMVAVVTSRHGGRQNVMASGWHTYIGSSPGIYGISL RKETHTYSLIEKSGVFGVHFLPGSRSELIQAVGTFSGRDMDKYKEFGIAYDDGLAADIPV LRDAYYAYECRVMEIRTYGDHEWIAGEILQRYKDEELFLDNGLPDLGKLQIPLYMGRSTY RIVQENTKEAQHLFG >gi|333607254|gb|AFDH01000040.1| GENE 8 6945 - 7412 349 155 aa, chain - ## HITS:1 COG:BS_yqkA_1 KEGG:ns NR:ns ## COG: BS_yqkA_1 COG0454 # Protein_GI_number: 16079424 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Bacillus subtilis # 6 151 2 147 172 81 30.0 5e-16 MNEGFITTLDFQDTELVRSLYELQRASYLIEAKLIDFYEIPPLKETFEEFLTCGEEFRGY FLDNQLAGAVSCTVEEKTVTICRMVVHPDHFKKGIAQQLLNTLESDMGHVPLFKVATGKD NVPAKNLYLKNGYKHERDLEVAPDFYISFFQKTVS >gi|333607254|gb|AFDH01000040.1| GENE 9 7871 - 8437 423 188 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764797|ref|ZP_02171850.1| ribosomal protein L29 [Bacillus selenitireducens MLS10] # 1 180 13 192 199 167 44 3e-41 MRVISGSARGRSLKAVPGMSTRPTTDKVKEAIFSMIGPYFDGGTGLDLFAGTGGLGIEAL SRGLDTCIFIDLEKKSLDTVRHNLEVTGLTDRAEIYRNDAGRALKALEKRGKQFGLVFLD PPYRFKITGELMQKMKGLGLLEQGATIVVEHDAADKLPEVFEGFVMQRRADYGDTAVTLY TFEDTGLN >gi|333607254|gb|AFDH01000040.1| GENE 10 8469 - 8984 470 171 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764798|ref|ZP_02171851.1| ribosomal protein S19 [Bacillus selenitireducens MLS10] # 9 169 4 164 164 185 55 1e-46 MHQEKPRLKIAVYPGSFDPVTNGHLDIIRRAAKVFDKLIVAVLNNTSKNPLFSLEERIEL LTKVTRDIPNVEVDGFRDLLINYMESKDVHIIVRGLRAVSDFEYELQLSTMNNKLNEEVE TFFMTSSPQYSFLSSSIVKEIARFHGPVSHFVPREVEEELKLKFAANTRQP >gi|333607254|gb|AFDH01000040.1| GENE 11 9034 - 9774 520 246 aa, chain - ## HITS:1 COG:BH2588 KEGG:ns NR:ns ## COG: BH2588 COG3314 # Protein_GI_number: 15615151 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 17 222 191 395 411 83 28.0 3e-16 KRRGAGSGASGAPLWRQAAGSLVRARSEDGRAFGQLLGEAVTASVQSLMVIGGYIMIFSV IIHMLTMPDMLQAAGGLLGLPVGPDLLHHLASGLFELHLGAHAAAGEQALPQGIKLALIA AFLGFGGLSSHAQALSAAYGAGLRYLPFLMARLLHACFSYLLVLLLWRFTSGLFPSVPSG RQTLEVSGTLSPIARTGEGALFSSLSIWMPAFAQLGFLLLVLAAGCILSYALHAFAQRRL HTGPKA Prediction of potential genes in microbial genomes Time: Sun Jul 17 08:32:53 2011 Seq name: gi|333607228|gb|AFDH01000041.1| Paenibacillus sp. HGF7 contig00240, whole genome shotgun sequence Length of sequence - 20711 bp Number of predicted genes - 29, with homology - 5 Number of transcription units - 19, operones - 7 average op.length - 2.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 542 -520 ## + Term 677 - 729 16.6 - Term 664 - 716 12.0 2 2 Tu 1 . - CDS 721 - 981 125 ## - Prom 1090 - 1149 4.4 - Term 1584 - 1629 0.6 3 3 Tu 1 . - CDS 1665 - 2738 -21 ## COG4973 Site-specific recombinase XerC - Prom 2808 - 2867 6.9 4 4 Op 1 . - CDS 3377 - 3865 9 ## 5 4 Op 2 . - CDS 3901 - 4116 76 ## - Prom 4189 - 4248 1.9 + Prom 4393 - 4452 5.8 6 5 Tu 1 . + CDS 4657 - 5247 130 ## 7 6 Tu 1 . - CDS 5256 - 5384 106 ## 8 7 Tu 1 . - CDS 6052 - 6252 98 ## - Prom 6298 - 6357 4.7 9 8 Op 1 . - CDS 6609 - 6770 108 ## 10 8 Op 2 . - CDS 6832 - 6924 146 ## - Prom 7044 - 7103 5.2 11 9 Tu 1 . - CDS 7152 - 7808 -41 ## COG0270 Site-specific DNA methylase - Term 8588 - 8630 6.9 12 10 Op 1 . - CDS 8780 - 9088 125 ## 13 10 Op 2 . - CDS 9105 - 9533 112 ## 14 10 Op 3 . - CDS 9579 - 10244 106 ## COG0286 Type I restriction-modification system methyltransferase subunit - Prom 10447 - 10506 8.1 + Prom 10390 - 10449 11.0 15 11 Op 1 . + CDS 10548 - 10802 119 ## 16 11 Op 2 . + CDS 10853 - 11236 163 ## COB47_2040 PilT protein domain protein + Term 11246 - 11294 4.7 + Prom 11263 - 11322 4.2 17 12 Op 1 . + CDS 11523 - 12239 189 ## 18 12 Op 2 . + CDS 12272 - 12430 106 ## + Term 12472 - 12514 10.5 - Term 12451 - 12509 11.6 19 13 Tu 1 . - CDS 12538 - 12861 58 ## - Prom 12923 - 12982 5.3 20 14 Op 1 . + CDS 14245 - 14529 189 ## 21 14 Op 2 . + CDS 14504 - 14659 151 ## 22 14 Op 3 . + CDS 14652 - 14837 153 ## 23 14 Op 4 . + CDS 14869 - 15036 120 ## + Term 15038 - 15073 4.4 24 15 Tu 1 . + CDS 16715 - 16876 67 ## + Term 17083 - 17115 1.2 + Prom 17192 - 17251 5.3 25 16 Tu 1 . + CDS 17323 - 17457 57 ## 26 17 Tu 1 . - CDS 17569 - 18177 -110 ## - Prom 18293 - 18352 3.6 - Term 18724 - 18761 6.2 27 18 Tu 1 . - CDS 18871 - 19428 164 ## 28 19 Op 1 . - CDS 19672 - 20022 333 ## gi|238021331|ref|ZP_04601757.1| hypothetical protein GCWU000324_01230 29 19 Op 2 . - CDS 20105 - 20566 -387 ## Predicted protein(s) >gi|333607228|gb|AFDH01000041.1| GENE 1 3 - 542 -520 179 aa, chain + ## HITS:0 COG:no KEGG:no NR:no SSPGQRGPVRHLPRWLCVSAGIPAAAGSCAVRSSPAAGIRKHRFCARQQPPGQRRPVRRL PQRLCGSAGGPAAAGSCAANHPLQTGSGGTGSTLVSSSPGQRRPVCRLSLRLADLQEAQQ LPTDCGPIVPCKRNPVVPGPGSSADHQGNAVRPPFSALVQQITRRPISTGTGSSAPRSR >gi|333607228|gb|AFDH01000041.1| GENE 2 721 - 981 125 86 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MYEILNEFFSSDSVAKQITVKVIVAIIASILKQIFSYFFTKAKKWFVTFKGKLKLKNIEP RNILKRKYPLTNQWILQKDITILKSV >gi|333607228|gb|AFDH01000041.1| GENE 3 1665 - 2738 -21 357 aa, chain - ## HITS:1 COG:VC0128 KEGG:ns NR:ns ## COG: VC0128 COG4973 # Protein_GI_number: 15640159 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinase XerC # Organism: Vibrio cholerae # 171 343 142 286 311 65 31.0 2e-10 MTTRSNILRAYSPDDDNITIWLSKYMDMIQEESADPKKIERCLKRFVNFFIERYGHQKVS AIVKRDVEAWLKVLYDPKEAGGFGFVASYVNSHHSALKGFTKWLRAAAPHLMAKDPMHRV KQIMLPDPEPKTLTHEQVLSLKNICDRLERFHMKTDRKKKSSDIRGYSRPLRDRAIVYVL LSTGLRREELVMVDLDQVVPRDPRLLRSATSAKIVRVRGKGKTEGTVYLSADARNAVADY LEYEWIKDVSNEAASPLFLSGARRQNRNSDGRMHKRTINKILEQIAEWHDGEQKDESRHI SPLHPHRLRHSFANELARNPNVTEQDLQRLIRHRNARYLSVYTKPPEERSASFIENH >gi|333607228|gb|AFDH01000041.1| GENE 4 3377 - 3865 9 162 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFEKKDIFLAFLKTFSLIIFCLIVVSSFMISLFALIGLVITTSWIADRLAIPKYITFFSI LISSLVFMHYVMNSKFYEREGKAKKLFPTDQLTDRHRKFIKWDLKLKWRPDSAALSSHPY FNVREFEVMEFIQLHDRNIAIINELYLSSMKRKPRAIINGRM >gi|333607228|gb|AFDH01000041.1| GENE 5 3901 - 4116 76 71 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRKRIAQNEYSPVLEVRRMKEEMDKKTRELLTESRKFGISNILGQCSTCQKYKAIHNFLD GKKVCTDCYTS >gi|333607228|gb|AFDH01000041.1| GENE 6 4657 - 5247 130 196 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MWKFNFDYDSLESQFDFLTKELAPKTKQQYCDGLYPELLEDIEKYIPFQKSLPAGHTPEQ TMEATRRTIILIDQQIKQKNDFRFYNGMEIKITKMNLLFLDKKIPAGSYIELANIYMSEI DKRIDSLPKQEPVSAATPRRGGKRNGAGRKSLGVKKPITITLPEADWIEIDNLIQLGVYS GYADYFRSLHNATTTK >gi|333607228|gb|AFDH01000041.1| GENE 7 5256 - 5384 106 42 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNRELTDIRMIPDPIPAKGQQGLWNWNDGQLEQLKYMGIVYM >gi|333607228|gb|AFDH01000041.1| GENE 8 6052 - 6252 98 66 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRKLIGPVLEVRRMKEEMDKKTRELLTESRKFGISNILGQCSTCQKYKAIHNVLDGKKVC TDCYTT >gi|333607228|gb|AFDH01000041.1| GENE 9 6609 - 6770 108 53 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGPGRPAQVCETEELVQEFEVASRGEDYEFALCALYKLVKMNKVPKDMGATNV >gi|333607228|gb|AFDH01000041.1| GENE 10 6832 - 6924 146 30 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGFEIIKNFMVLVVLVMFVWLAWELVRPVY >gi|333607228|gb|AFDH01000041.1| GENE 11 7152 - 7808 -41 218 aa, chain - ## HITS:1 COG:mlr8517 KEGG:ns NR:ns ## COG: mlr8517 COG0270 # Protein_GI_number: 13477024 # Func_class: L Replication, recombination and repair # Function: Site-specific DNA methylase # Organism: Mesorhizobium loti # 20 197 474 658 667 89 35.0 4e-18 MLETDEPYFVPSHAAVGNLTNQSDSVLAFLSKYYGEVSPGEARGQSLYDPLHTISTANRF ALVTSHLVKFRGDNYGSSTAAPLPTISAQGNHAGEVRALLIKYYGEGIGQNLHDPLHTIP TKDRFGLVLIKGDLYQIVDIGFRMLQPHELFAAQGFPSDYIIDRDASGKKLSKSSQIARC GNSVPPAFAKALIEANLPELCVNKKSYKSEYQYELQLM >gi|333607228|gb|AFDH01000041.1| GENE 12 8780 - 9088 125 102 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVYVSLNGHRNTPEVNRKWIHRDTRYTLLRGMYGNVYEIIDHDRKVRYRQDHPIVDPGDL FDPDALYLFIVITASSVQVLSAWFAISWFTITWFVLTPTLNG >gi|333607228|gb|AFDH01000041.1| GENE 13 9105 - 9533 112 142 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MQQRQPIDPSKLKVINPGDFVTFELVNGSCFSGVIKEIGKFKFDYWWPSPSTFQPEDIHR IKFHERKDETKLLYVLIKFSNEDLLDAIVYSSFDLAKQNFFDYTGVTYEKFEKRLSAGED YEEILGYKYAGTLIKTRQILSV >gi|333607228|gb|AFDH01000041.1| GENE 14 9579 - 10244 106 221 aa, chain - ## HITS:1 COG:lin2410 KEGG:ns NR:ns ## COG: lin2410 COG0286 # Protein_GI_number: 16801472 # Func_class: V Defense mechanisms # Function: Type I restriction-modification system methyltransferase subunit # Organism: Listeria innocua # 2 214 6 218 237 189 46.0 5e-48 MKNINGLLGINDSYQAPTKIMEILYDRKRREELFMKFLEAFNFDVSYDWFHYYFQDEHAD RKQKKQDFTPVGVADLLTALTGVDEGTTYDCAAGTGGITIRKWQAGRTRTSLVEYKPSNY LYVCEEVSDRAIPFLLFNVLIRGMNAIIIHCDVLSRNTYGVFFVQNDKDNPNGFSSLNVV PYSQDLASFLAVKFVEERYSNLIESKEYPAHLYDYSSKQAI >gi|333607228|gb|AFDH01000041.1| GENE 15 10548 - 10802 119 84 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSQVRIAGESEVKNKYQTTIPEDIRRKAELGIGDTLIWSYDPDTKQVSITAKPKSFSDAL WGLGEEIWQKQTGDEYIRNERENW >gi|333607228|gb|AFDH01000041.1| GENE 16 10853 - 11236 163 127 aa, chain + ## HITS:1 COG:no KEGG:COB47_2040 NR:ns ## KEGG: COB47_2040 # Name: not_defined # Def: PilT protein domain protein # Organism: C.obsidiansis # Pathway: not_defined # 1 124 24 147 148 105 43.0 5e-22 MFEKHPQYGEKSKKILDLVEQGKIIALASTVTLTEILVKPLKEGQSNIANRYKVLFSHFP NLELLPVNDVVAQRAAALRATYGMKTPDALILATAIEGHAEAFVTNDLRLKDVEEIKCIS IEELEVE >gi|333607228|gb|AFDH01000041.1| GENE 17 11523 - 12239 189 238 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKKTILSTLSAALIVTAIPYNALAASPNHEATSSTSKVEENTTESLGANTDIITKDGVSV TIAAGSEDSDILQENSSVRAEAEKFLANRHNAKTVTNPDSYSPKSDPIWGNETIVLSRKS NDYKNAVKKDVITFVSAAVTNTIGLIGGILTKNVYTTAAIGSFTTAVSGWVNNHVDWKYT YTTFYKTYSDYYGRDVYYYVEDIYADPYRTILKKTVISEPHVDLGSKVYLTTKDYYGN >gi|333607228|gb|AFDH01000041.1| GENE 18 12272 - 12430 106 52 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKTRTQRILLAVPFLIAVIFISTKLDTFLSMIVNFVFIWLVGTWILKGTKED >gi|333607228|gb|AFDH01000041.1| GENE 19 12538 - 12861 58 107 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKKNTLQEIGQAIRVARLNAGLTQEDLAEASGKERGYISDVERGGKNVTIRTLDDIAEAL SMDALDMIQLYRSQDETIAAVVALLDGESVEERKRLLEILKLICGRK >gi|333607228|gb|AFDH01000041.1| GENE 20 14245 - 14529 189 94 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNSIHILKDRLEKKIKYEGVQVIFFGGEWNIVSNEVVVKTLIEGCNTTEAADEIMELMEY NLNDFMVYAANSYLKVKSLAEGGTSKDVKPSTAH >gi|333607228|gb|AFDH01000041.1| GENE 21 14504 - 14659 151 51 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLNLQQHIELLRLELNTLADEHGICHPVVIEKSQQLDELLNEYMKGEFNNA >gi|333607228|gb|AFDH01000041.1| GENE 22 14652 - 14837 153 61 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLDLIWFGIGVILFLGALYALKVLIEHRKIEAGYSSEPTPVFYKVASSKSGETRGITYVY H >gi|333607228|gb|AFDH01000041.1| GENE 23 14869 - 15036 120 55 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MVQTVLEQYQEKNRRLMNCLSEIANSGMTLAEIKEYAQRQLEIENIAAKKQVNEK >gi|333607228|gb|AFDH01000041.1| GENE 24 16715 - 16876 67 53 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSLKFGWFFLDNTHELAYFNPTSVTFEKDIENVFLSFFGERINQYGLSYLFFA >gi|333607228|gb|AFDH01000041.1| GENE 25 17323 - 17457 57 44 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNYAFRGFKDPDQSLFVRFKWPSLWVHLGGKRAQLQVFSLAPFG >gi|333607228|gb|AFDH01000041.1| GENE 26 17569 - 18177 -110 202 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFQRKNYNLGSFENKRDAIQARKEAEARLHGEFLEWYYSRKENKLIPEQPRRKRKHSDED LIQSLRDVAKQFPDKYLTVWDYASVCRSPTYQTITTRFGSWGEACKKAGVQTVPRSDDAD KHRKDYIRDYQRRKKQQWIAEGKCKNCGGDWIPPESKPGKRKASYCLNCQKRTADRLKRR QEKRLELAQSIMLIYAMLQFYK >gi|333607228|gb|AFDH01000041.1| GENE 27 18871 - 19428 164 185 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLTDKEKQLWENKFNKTVQRFKVDVKVTVAHPVTGEIFEQESYAILDELALGELKDNIEN SPFRIINVSESDETENSLFFSVPMELTPEEKELEERLISTLQHCKTQTDAYFAFHEDEVN YEGFYPGPVPTDFQDNVKIYSEVCVCHPQASPKIKYIAEIKNEFSFEDETIIDIWDVNNY YENNS >gi|333607228|gb|AFDH01000041.1| GENE 28 19672 - 20022 333 116 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|238021331|ref|ZP_04601757.1| ## NR: gi|238021331|ref|ZP_04601757.1| hypothetical protein GCWU000324_01230 [Kingella oralis ATCC 51147] hypothetical protein GCWU000324_01230 [Kingella oralis ATCC 51147] # 1 112 1 111 113 70 46.0 3e-11 MKVVIKGTDKVATLSITDANGVNYVKDFIGNYDAFLDGQFTINEDLHAYEATQETFDWWE KVINDNQALEDRLNSLREEYGSDRVNEIVSAASDVDLEDLAAAVNKALDEELNLGK >gi|333607228|gb|AFDH01000041.1| GENE 29 20105 - 20566 -387 153 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MPASRRSAMPARPAADRWRWPGEPLTAADRCALGYCLQGDDRNTDGSTTYSYWPLRDPQG RRNRRQRTVDVARRAAGGRGPRRFRIPLQGNGPDADASFSFSCWSSSRETACRAWPDSRS PAGLPRDSTVSLVFIELYFITFSFCSVVLYNLI Prediction of potential genes in microbial genomes Time: Sun Jul 17 08:35:48 2011 Seq name: gi|333607205|gb|AFDH01000042.1| Paenibacillus sp. HGF7 contig00211, whole genome shotgun sequence Length of sequence - 17523 bp Number of predicted genes - 21, with homology - 14 Number of transcription units - 3, operones - 2 average op.length - 10.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 282 166 ## - Prom 311 - 370 3.3 + Prom 270 - 329 3.8 2 2 Op 1 . + CDS 460 - 2436 1394 ## COG2192 Predicted carbamoyl transferase, NodU family 3 2 Op 2 . + CDS 2466 - 3257 696 ## Pjdr2_5210 phytanoyl-CoA dioxygenase 4 2 Op 3 . + CDS 3261 - 4094 823 ## Pjdr2_5210 phytanoyl-CoA dioxygenase 5 2 Op 4 . + CDS 4124 - 5389 608 ## COG0172 Seryl-tRNA synthetase 6 2 Op 5 . + CDS 5392 - 6417 924 ## 7 2 Op 6 . + CDS 6458 - 6694 243 ## 8 3 Op 1 . + CDS 6825 - 7358 589 ## + Term 7373 - 7409 2.2 9 3 Op 2 . + CDS 7437 - 8615 841 ## Deide_1p01022 FAD-dependent oxidoreductase 10 3 Op 3 . + CDS 8608 - 9546 817 ## COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain 11 3 Op 4 . + CDS 9568 - 10419 698 ## Pjdr2_3017 phytanoyl-CoA dioxygenase 12 3 Op 5 . + CDS 10421 - 11245 698 ## Pjdr2_3017 phytanoyl-CoA dioxygenase 13 3 Op 6 . + CDS 11242 - 12039 641 ## Halhy_0610 Phytanoyl-CoA dioxygenase 14 3 Op 7 . + CDS 12054 - 12902 560 ## Pjdr2_3017 phytanoyl-CoA dioxygenase 15 3 Op 8 . + CDS 12991 - 13230 314 ## 16 3 Op 9 . + CDS 13263 - 13667 353 ## 17 3 Op 10 . + CDS 13685 - 14104 299 ## COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases 18 3 Op 11 . + CDS 14091 - 14894 652 ## COG1073 Hydrolases of the alpha/beta superfamily 19 3 Op 12 . + CDS 14898 - 15764 684 ## pc0879 hypothetical protein 20 3 Op 13 . + CDS 15764 - 16732 771 ## 21 3 Op 14 . + CDS 16741 - 17521 730 ## COG2309 Leucyl aminopeptidase (aminopeptidase T) Predicted protein(s) >gi|333607205|gb|AFDH01000042.1| GENE 1 3 - 282 166 93 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MESESANKVLPDLSSGYTLTQEQIRYFRANGHICLKEVLTPAEITAYRPCILEAIRDYMT NTIPSSGPDDSGTVNLRLRHPDVGRFTASRRLA >gi|333607205|gb|AFDH01000042.1| GENE 2 460 - 2436 1394 658 aa, chain + ## HITS:1 COG:mlr6171 KEGG:ns NR:ns ## COG: mlr6171 COG2192 # Protein_GI_number: 13475153 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted carbamoyl transferase, NodU family # Organism: Mesorhizobium loti # 260 554 259 551 673 163 37.0 1e-39 MWRGESMQDGYYLSTYFHIGPLDYLTGTCIRHDPNMALFRKEGGDIRLIRYWELERFTGR KQHRQSFYSLEHAAGVVDELLGPLGLSLEDMTEVWGTPGLATCSDYHSLDDYPDLSYHSI SHLFSAVMADSRLFYEGNVLGLAVDGIPDDVVDRETGNKPFFAGCLVRSGKLELFPVQSP GPLWDWSSTYYNLREGTLMALAYASESAVNPVPLELPPAYDRNFNIWEHDYLRPLIEAAD KLCERDARENPAYTGFDPRFTERENKISAVMKQVQAASIALMERNVEAILDSYGVKPEET YLALAGGYALNCPTNSHLMRKYGFKGMIAPPCVNDSGLSLGMGLYAFYRKMSPARIRFRL GHAYHGASGSALEEVLQSGAFAGCIGSVTPLEESRAAEDLCHAPVVWFDGPAEMGPRALG ARSLLGDPRTSAAKDALNTVKQREWWRPVAPVILAGEVGEWFEEGCPSPYMLHTFRVKAE KRELIPAVIHLDGTARVQTVEDAPPTRNLYRLLRAFKEATGVPVLCNTSLNGKGEPIIQD IGEALHFALVKGIEVAYINGRRVQLVNHGSYRARAGNAAFPRQIEFSPMSPEERDAAMLR HNPHRIPLEILKFYMERIERGGIKRYDLTDPKQARRLIREVQLHRSRPGEREFCDPEA >gi|333607205|gb|AFDH01000042.1| GENE 3 2466 - 3257 696 263 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_5210 NR:ns ## KEGG: Pjdr2_5210 # Name: not_defined # Def: phytanoyl-CoA dioxygenase # Organism: Paenibacillus # Pathway: not_defined # 6 253 8 253 267 149 34.0 8e-35 MTAYSLSVQEKQFFAEEGYLVLKGVYSPEEVNALKEEYHKAWLDSILDKKIVQDPEKPLM SLFPRMKDLHKDHALVHEFVFKEEALAALEELTGEEALLVSTNFYFKPPGSTGMPFHQDN YGIGVLPGTCYAIWAGLDPADVSNGGMRIVRRTHTSDLQVPEKVYTTAEDTFGGYVQTLA VPEEHELIELRTEPGDIVIYHGNLIHDSADNGSEVLFRHSIISHFAGTSAEKTTLNFNYL MNKEGQRVRKRMNAGANLGRKGE >gi|333607205|gb|AFDH01000042.1| GENE 4 3261 - 4094 823 277 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_5210 NR:ns ## KEGG: Pjdr2_5210 # Name: not_defined # Def: phytanoyl-CoA dioxygenase # Organism: Paenibacillus # Pathway: not_defined # 5 254 8 255 267 157 33.0 4e-37 MNEKLTDDKLTTFAGEGYLVLSDVYTPEEVNELIRQFDLHWVQLTASGQIIQNGNRPLES LYPRLRDYHRKNEIIKRLSLKPQLFAYLEQLIGEEALIISTSYYFKSPSTRGLPMHQDNY AFGVSPGTTYAAWISLDGSDEGNGGMTFVPGTHSLDLQVPEGDTSDVRRYFSDEGQWLKD YETAEMVKVATNPGDVIFFNGNIVHGSSDNLSRHRFRRSLLIHFTGVSVEKLALNFNNLM DKTGARVRRRLNTDTKITEGQESVFSIQEADYFAGWR >gi|333607205|gb|AFDH01000042.1| GENE 5 4124 - 5389 608 421 aa, chain + ## HITS:1 COG:AGc4663 KEGG:ns NR:ns ## COG: AGc4663 COG0172 # Protein_GI_number: 15889830 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Seryl-tRNA synthetase # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 125 421 63 325 327 86 26.0 1e-16 MLIRVPLDKVGQAGDLIQLMEKIYYLSDRITNVSRDEAALTIEYGGSDEEEVVRRLDVLC ASLSGRRKLPYRKVKDNRRYGEAGRARARTGASPSRERDSENSESSESSESSESAKEAHV LLEQALVKLLRSRAHAYGAALRRYPAMMPESVLQKSGYIRNFPQNVYAVGEFRHQFDTMQ EIRARLEDNAPLHELLQPSGMYLQPCVCYHVYEERSGTRSGGPAGNGSGPGAAGAVSSGP KLALYSAYGPCFRHEHTSRIDDSRLREFGMFEIVYIGGAQEVRDMRLKLLEDTWLLFGQL GLEGYVETASDPFFLPEDTDRRLFQLAAESKFELRFAPGGGSASDYAVTSFNVCGDVLCK AFGITGEAEEYGDSGEAGEAGKGAPLHSGCTAFGVDRWVQALAETHGYEAGSWPQLIREH L >gi|333607205|gb|AFDH01000042.1| GENE 6 5392 - 6417 924 341 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MDTRHLLPVAESPGFETECYHNIRLSLLLAHARTLPWYHSHFMNLTLKSTGADLFPVVRF EEHLDVYSEVLEETPLVRCEDWVETARKTLGEGRYMIVYFNWRNIPCSRYYNKQDMFHEA LVYGFDDERKVFHFLAFDVNGKGYGSSEVPYGLFGREMTRLADEDLHAQRWFAFYGFPAS VIRLKDALASRPDTRNMYFALERGRVRGNGSQDETFAMGHYVNEVLSLYFRQLAEGRPLQ AKEFIYWNIIVHKMILHKSLMLQRIVYLQTGTDSSQLDLLKNVYIKAKTEMDRAKWTSIK YQRTKASVYLHQLADNFQTLYELEKRASAMLMEFLTLSHLK >gi|333607205|gb|AFDH01000042.1| GENE 7 6458 - 6694 243 78 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MEAVIIEHVKQILPQQIEIEPTTKLLETGIDSMSFIRLVVLLEEAFNIVIEDEEILLENF TSVETIRNLIQKCLDSKQ >gi|333607205|gb|AFDH01000042.1| GENE 8 6825 - 7358 589 177 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKTASSKKNAKQVTMTLENSNSKTYLELLDGRSEELQFTQVAPTEFTVNDSEFSLKSGIN VELGIKNVDLVATSSVIWPGQTIRVRGGLHGQGAAMKAKATIPFNKKMADGVQGESWLYW VIETPEGEFHNKQAIHMKGTLKGLPPKNATFYSDSVTPLFDSEDNQVGTVYGCLQSN >gi|333607205|gb|AFDH01000042.1| GENE 9 7437 - 8615 841 392 aa, chain + ## HITS:1 COG:no KEGG:Deide_1p01022 NR:ns ## KEGG: Deide_1p01022 # Name: not_defined # Def: FAD-dependent oxidoreductase # Organism: D.deserti # Pathway: not_defined # 2 344 5 357 371 162 33.0 2e-38 MYDVIIVGARCAGASLASFLGRRGHSVLLVDQFPYPNATTSTHILGESDVYGRLGILGKM ESAGAPFLTRMRVDLEGTVFESDITVTKRALGLRRELLDPLLLQSAARHRNVEVRLNTRV TKILLENGRAVGIECRKKDGQLQRFAGKVVIGADGRYSAVAKGVRAPLETETERPLHGVA YAYLSGVHRLPVPAVEWYWKGSSVVLCNPIDGLMHCAAIMYSPEEQERMARLGRGGFMER LLEIRTLAPRLAESGLEGSVRGIPPAKSFIRKAYGCGWALAGDAGAFLHPVAGVGIDNAV CTAEVLADELHAFFTGAKEWEEAMRSYEEQRNNRIYPQYRHSLATLETAGDPLTETSAGA LKMLATFPSLVKKIGLQAEAVISLLSGGQNHD >gi|333607205|gb|AFDH01000042.1| GENE 10 8608 - 9546 817 312 aa, chain + ## HITS:1 COG:PM0734 KEGG:ns NR:ns ## COG: PM0734 COG0265 # Protein_GI_number: 15602599 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain # Organism: Pasteurella multocida # 163 258 274 368 459 62 31.0 2e-09 MIECPTDRTRNVTYLEAAPEQVWWSIATTEGTNTYLTYSSSTTGDPSLPKAGDVYTLNYG DIENQSVVVESVPNCRFVLSDAYQSLAPDGKAEIFYVNTAFTLEASDGFVKLSLQVQGFA EDTYGQWLRECLEMGWRRSLMNLKSVLELGLDLRTELFSYPRLGVTNCTVNPEQSRETGV SVRGGNYLLEVFPNSPAQKAGLRAHDIILGIGGRTTATYGDFVRVISSYSGKKGPVSVTF SRSGKQHETTVRLSVEEQFTGLNKESLSLEEIKHRRELIAKSRSASGAVWTGTESGMKAA AENGEDGAAGTQ >gi|333607205|gb|AFDH01000042.1| GENE 11 9568 - 10419 698 283 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_3017 NR:ns ## KEGG: Pjdr2_3017 # Name: not_defined # Def: phytanoyl-CoA dioxygenase # Organism: Paenibacillus # Pathway: not_defined # 12 269 11 273 277 219 43.0 8e-56 MIGEERSATAGLDREYSLTGEQISRYRRDGHAYLEKVCSAEEVQAYRQAVTEIYPAFTAD SYPPDEREFYGVERAFPTVMNMWERSSKVRTFTFARRFAQIAADLMGVDRLRLYHDSAIF LEPGGGAIPWHQDSPYMLQMDPDMTMTMWMPLVDLPAELGSMRFMSGSHELPADKHTNLL LQAYRKGLAEVHYGAMPAGDATFHSGLTLHYAAANRTSIVREVATIIYVADNLRIVEPDT EARAYHLRRIFPGMKPGDTAVSPWTPLVFDRFAESGSRTERKG >gi|333607205|gb|AFDH01000042.1| GENE 12 10421 - 11245 698 274 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_3017 NR:ns ## KEGG: Pjdr2_3017 # Name: not_defined # Def: phytanoyl-CoA dioxygenase # Organism: Paenibacillus # Pathway: not_defined # 3 243 4 261 277 170 36.0 5e-41 MENTHGFDALEQEWSVSREDIDGFRRDGHLLLRQLASEEDIGRIREACRREIARLDDGLR LQVMNVWEKDAAVKAFVFARKFSRIAADLLGVDGVRLYFDQVFFKKPGAGAMPLHQANQF MLELDPDSVLSMWMPLTDIPGERGPLSYVAGSHHHEKLRGAKNPLLAAMRLGLSEKPCGP MRAGDASFHTGWTLHGAYGNDTQITREMLIITWFAEDARITDPADSAGRNPQLQSLFQGL EPGGKAQGRRLPLLFYRPYRDVVKLVHQTEEDAE >gi|333607205|gb|AFDH01000042.1| GENE 13 11242 - 12039 641 265 aa, chain + ## HITS:1 COG:no KEGG:Halhy_0610 NR:ns ## KEGG: Halhy_0610 # Name: not_defined # Def: Phytanoyl-CoA dioxygenase # Organism: H.hydrossis # Pathway: not_defined # 9 260 7 271 271 184 40.0 4e-45 MNGAVHDDLPPLGDSYALPEGLIAQFRANGHVCIRQAAFIHEISAYRPHIISAVEGYTGD RSVRPHKQLYMNLWEEDTRVRQFVFARRFAKLAADLMGVTGVRLYLDQANFIEPGASVTP WHQTEAYMLELDPAQIITMWMPLVDLPEPGGPVTYLSGSHLLPGGASKNPLLEAKRAGLP EENYGPLRTGDAAFHAGRLLHSAPGNGGAFTREVMTVTYFADGARILDPEDKSGRAPHLR RLFAGTVAGQPAAGPLTPLLYRRLF >gi|333607205|gb|AFDH01000042.1| GENE 14 12054 - 12902 560 282 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_3017 NR:ns ## KEGG: Pjdr2_3017 # Name: not_defined # Def: phytanoyl-CoA dioxygenase # Organism: Paenibacillus # Pathway: not_defined # 10 271 11 277 277 229 44.0 1e-58 MEDSLFTANLHEEIVLSPGQIEEYRSKGHVYAGRVAAEEDVAALRPLVRELVRTCVQEDR PLEERDDFGRAFLQLINLWQRDEAVKKFVFARKFARMAADLLEADGVRLYLDQIFYKEPG GGPTPWHQDGAYMLRFKPDKLITLWLPLTDIPDEMGSLRFISGAHEIERMKSSGNILLDA VRRGLPETGYKGMKAGHATFHSGWTPHSALANPTDSMREVLTITYIAEDAIIADPEDKEA RRKHLETYFPGRKPGERADSPLNPVLYSRDGAARSASESAAQ >gi|333607205|gb|AFDH01000042.1| GENE 15 12991 - 13230 314 79 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MCAKDQIRLFLSDQGCGMLPVEEISEEKRLFDMGFDSLRFMELVVLIEEHFGVQWPDEAL EISGSTQVRDIVQALEGCL >gi|333607205|gb|AFDH01000042.1| GENE 16 13263 - 13667 353 134 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLPHQFPLRVLDEVKDYSPGKFLVAGCSPLPLKIYFGNTDTIPPTLLIEGLAQACVILTQ LETAPLEEDEVPLLGAIKAKLLMPISWQEPIIYKVEPVRILSKKAIFTGTLYRSDGTTAV SAELSVAVAATSNS >gi|333607205|gb|AFDH01000042.1| GENE 17 13685 - 14104 299 139 aa, chain + ## HITS:1 COG:TM0801 KEGG:ns NR:ns ## COG: TM0801 COG0764 # Protein_GI_number: 15643564 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases # Organism: Thermotoga maritima # 12 128 15 132 137 71 37.0 4e-13 MPAEAYLHDAKPWTMVDRIIGESDRAISTLKNISGSDFYLIGHFPSYSVYPGMLMVECIL QSAELLLRRQLPGKPGDCRFGEIASRFLSPVVPGDSVRFDVGFTAGGSELAAVGKVGGRT VIHCKMKLLREEGEKDERR >gi|333607205|gb|AFDH01000042.1| GENE 18 14091 - 14894 652 267 aa, chain + ## HITS:1 COG:CAC3665 KEGG:ns NR:ns ## COG: CAC3665 COG1073 # Protein_GI_number: 15896898 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Clostridium acetobutylicum # 16 265 20 264 265 88 29.0 2e-17 MNGDERLVELYDQGELAGVLHLPPEHLRPCPVIIYCPGKNGERYEVHRLAVKFARRLAQQ GIAFLRFDYYGIGLSDGHYFDMTTSGKISNVLKAYEFVCGHPDLREREAVFLGFSDGARI ALMAARASGIERLVLWSPLFFEFGGNYPSGKHPRFIRHPEAGKLVMPWAGLWVGMDFYRD LQSMDTEVALESYKGSSVLVYGNNDPLILEEMELSESRQSAIYRHSAQNRVVRVPEAGHL FTSRPLEETLMDHTTSWLLTERLVRGG >gi|333607205|gb|AFDH01000042.1| GENE 19 14898 - 15764 684 288 aa, chain + ## HITS:1 COG:no KEGG:pc0879 NR:ns ## KEGG: pc0879 # Name: not_defined # Def: hypothetical protein # Organism: Parachlamydia_UWE25 # Pathway: not_defined # 28 143 35 151 263 67 37.0 1e-09 MWKQRRFGRDRGIYGLVEEPDGPGNDLVVTFAGLGQAMSEKNYLFSNLRKYLARSGVRVV QFDYRGHGDSFGELGDTTVSGMKRDALEVLAEVLEEYPAERIFLIGNALGGIIALQTAAA LQKKEEAAPVCIPVLLAPPFRKFPEKEALFGREALQALRREGKLDAQLLVPGFDYYTLSD FNREPYDFFMAWGAHMLYLHGQCISAGMLDELLELDTARLVREYGGPLHIMCSREDEEAR TIAEAMDHVILHRMQGYRYFYQHPAAMDQWITEAVSIVRSDNGEREKF >gi|333607205|gb|AFDH01000042.1| GENE 20 15764 - 16732 771 322 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MEETRKTIAQTILSQKNDWRFPDGEGLSQRTLDCRQLCMMEVLKWKGERQLTPVFLNAFD CESNGLMLRRREPEPGRGWRLTKYSPLNTEGLYPLIDSVFDHEGYCLLFYNAKEAVFSSY YGKHDIVHWSLLVDYDEAGVTLVDDEGAPAFFNGYIGKVPWETLMSAQANSEKGGVAILG RRPGYAKTWEEEFLSLVRASVHNMVDQQGLKNLENFVKAIAESPPEALIPMLETLEFDVH YFRRLRELWKTAVENGAIPERYKAPGWVEELVYVCKSWSLVMGVLAKWKRQPDKDYSAKL TDYLGQALESEKGFYRELRHLV >gi|333607205|gb|AFDH01000042.1| GENE 21 16741 - 17521 730 260 aa, chain + ## HITS:1 COG:BH3246 KEGG:ns NR:ns ## COG: BH3246 COG2309 # Protein_GI_number: 15615808 # Func_class: E Amino acid transport and metabolism # Function: Leucyl aminopeptidase (aminopeptidase T) # Organism: Bacillus halodurans # 8 260 9 262 371 202 39.0 4e-52 MKEEFKRIADTIVSHSLRLRPGEKVVVKVRGDAADLTESLIARIYEAGAVPFLQTTDVEE LKWLLAGASEEQIRQWAEHDLGLVEAMDAYIGIHSEANTFEMEDADQTRYGYYVKHYLQP LTMTMASKPKWVLLRYPTPGMAQQAGIGTSKLRQIYASSCLMDYGGLQEKAEPLRKLLGR TSRIRIVSPGTDLSFSVKGVPSFLCDGRYNLPDGELFTAPVAGSAEGRITFNVPTSCMGK TFDSVALTFRQGKVTEWSAD Prediction of potential genes in microbial genomes Time: Sun Jul 17 08:38:05 2011 Seq name: gi|333607086|gb|AFDH01000043.1| Paenibacillus sp. HGF7 contig00002, whole genome shotgun sequence Length of sequence - 111385 bp Number of predicted genes - 113, with homology - 100 Number of transcription units - 67, operones - 28 average op.length - 2.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) + TRNA 13 - 88 90.8 # Asn GTT 0 0 + TRNA 92 - 181 67.6 # Ser GGA 0 0 + TRNA 191 - 265 74.2 # Glu TTC 0 0 + TRNA 319 - 394 94.8 # Val TAC 0 0 + 5S_RRNA 325 - 379 94.0 # AF302131 [D:490..741] # 5S ribosomal RNA # Streptococcus agalactiae # Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus. + TRNA 413 - 486 74.3 # Met CAT 0 0 + TRNA 492 - 568 69.6 # Asp GTC 0 0 + TRNA 610 - 685 92.9 # Phe GAA 0 0 + TRNA 701 - 776 91.8 # Thr TGT 0 0 + TRNA 782 - 867 78.0 # Tyr GTA 0 0 + TRNA 873 - 946 64.9 # Trp CCA 0 0 + TRNA 969 - 1044 69.8 # His GTG 0 0 + TRNA 1074 - 1145 67.8 # Gln TTG 0 0 + TRNA 1154 - 1228 93.2 # Gly GCC 0 0 + TRNA 1238 - 1311 71.0 # Cys GCA 0 0 + TRNA 1321 - 1409 72.7 # Leu TAA 0 0 + TRNA 1428 - 1504 84.8 # Arg ACG 0 0 + TRNA 1510 - 1592 68.0 # Leu CAA 0 0 - Term 1498 - 1566 30.5 1 1 Tu 1 . - CDS 1736 - 2521 253 ## PROTEIN SUPPORTED gi|163802692|ref|ZP_02196583.1| 30S ribosomal protein S21 - Prom 2553 - 2612 4.2 2 2 Tu 1 . + CDS 3551 - 4501 648 ## COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) + Term 4589 - 4628 5.3 + Prom 4595 - 4654 9.3 3 3 Tu 1 . + CDS 4808 - 5179 203 ## gi|167463115|ref|ZP_02328204.1| hypothetical protein Plarl_11207 + Term 5187 - 5232 10.5 + Prom 5213 - 5272 5.6 4 4 Op 1 . + CDS 5296 - 5982 467 ## COG2258 Uncharacterized protein conserved in bacteria 5 4 Op 2 . + CDS 5979 - 6989 587 ## COG2896 Molybdenum cofactor biosynthesis enzyme 6 4 Op 3 . + CDS 7039 - 8238 935 ## COG4552 Predicted acetyltransferase involved in intracellular survival and related acetyltransferases + Term 8254 - 8298 5.2 - Term 8323 - 8348 -0.5 7 5 Tu 1 . - CDS 8452 - 9390 920 ## DSY1549 hypothetical protein 8 6 Tu 1 . - CDS 9522 - 10139 355 ## gi|167463118|ref|ZP_02328207.1| hypothetical protein Plarl_11222 - Prom 10317 - 10376 4.2 + Prom 10246 - 10305 3.9 9 7 Op 1 7/0.000 + CDS 10454 - 11116 852 ## COG4758 Predicted membrane protein 10 7 Op 2 19/0.000 + CDS 11155 - 12213 915 ## COG4585 Signal transduction histidine kinase 11 7 Op 3 . + CDS 12219 - 12854 779 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain + Term 12870 - 12912 0.4 - Term 12858 - 12897 5.0 12 8 Tu 1 . - CDS 12904 - 13362 180 ## + Prom 13437 - 13496 8.3 13 9 Op 1 . + CDS 13629 - 13718 105 ## 14 9 Op 2 . + CDS 13816 - 14253 323 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Term 14433 - 14474 2.1 - Term 14272 - 14307 5.1 15 10 Tu 1 . - CDS 14341 - 14661 167 ## gi|322381415|ref|ZP_08055414.1| hypothetical protein PL1_2260 - Prom 14776 - 14835 4.5 16 11 Tu 1 . + CDS 14764 - 16338 1677 ## COG0364 Glucose-6-phosphate 1-dehydrogenase + Term 16374 - 16421 6.1 + Prom 16344 - 16403 4.1 17 12 Op 1 40/0.000 + CDS 16478 - 17188 611 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 18 12 Op 2 4/0.000 + CDS 17181 - 18293 983 ## COG0642 Signal transduction histidine kinase + Prom 18302 - 18361 2.4 19 12 Op 3 36/0.000 + CDS 18408 - 19184 671 ## COG1136 ABC-type antimicrobial peptide transport system, ATPase component 20 12 Op 4 . + CDS 19159 - 21096 1697 ## COG0577 ABC-type antimicrobial peptide transport system, permease component + Term 21125 - 21177 8.5 + Prom 21152 - 21211 9.3 21 13 Tu 1 . + CDS 21290 - 21853 483 ## Pjdr2_4371 hypothetical protein + Term 21865 - 21906 11.1 - Term 21848 - 21899 15.1 22 14 Tu 1 . - CDS 21901 - 23367 1274 ## COG0840 Methyl-accepting chemotaxis protein - Prom 23420 - 23479 3.5 + Prom 23406 - 23465 5.5 23 15 Op 1 . + CDS 23560 - 24642 925 ## Clocel_3655 metallophosphoesterase 24 15 Op 2 . + CDS 24710 - 26299 1829 ## COG4108 Peptide chain release factor RF-3 + Term 26352 - 26399 12.4 - Term 26344 - 26383 4.3 25 16 Tu 1 . - CDS 26405 - 27124 457 ## gi|304406554|ref|ZP_07388210.1| hypothetical protein PaecuDRAFT_2886 + Prom 27201 - 27260 2.6 26 17 Tu 1 . + CDS 27299 - 28048 778 ## Pjdr2_0007 hypothetical protein + Term 28058 - 28093 -0.9 - Term 28044 - 28081 1.1 27 18 Op 1 40/0.000 - CDS 28196 - 29692 1409 ## COG0642 Signal transduction histidine kinase 28 18 Op 2 . - CDS 29694 - 30419 911 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 30636 - 30695 5.7 + Prom 30616 - 30675 4.6 29 19 Op 1 . + CDS 30779 - 31822 1007 ## COG1609 Transcriptional regulators + Prom 31855 - 31914 3.7 30 19 Op 2 . + CDS 32036 - 32758 677 ## COG4359 Uncharacterized conserved protein, possibly involved in methylthioadenosine recycling + Term 32782 - 32827 13.1 - Term 32764 - 32819 14.8 31 20 Tu 1 . - CDS 32869 - 33072 193 ## GYMC10_5503 small, acid-soluble spore protein I - Prom 33132 - 33191 2.9 + Prom 33092 - 33151 7.0 32 21 Op 1 . + CDS 33187 - 33846 793 ## COG0569 K+ transport systems, NAD-binding component 33 21 Op 2 . + CDS 33854 - 34675 223 ## PROTEIN SUPPORTED gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 + Term 34703 - 34751 10.7 - Term 34694 - 34736 9.3 34 22 Tu 1 . - CDS 34778 - 35299 437 ## Bcer98_0708 hypothetical protein + Prom 35117 - 35176 5.3 35 23 Tu 1 . + CDS 35421 - 36233 844 ## Pjdr2_1201 sporulation protein YunB + Term 36429 - 36467 4.2 - Term 36403 - 36463 11.2 36 24 Tu 1 . - CDS 36499 - 37536 914 ## COG0739 Membrane proteins related to metalloendopeptidases - Prom 37659 - 37718 7.2 + Prom 37618 - 37677 5.8 37 25 Op 1 1/0.231 + CDS 37794 - 38678 588 ## COG0320 Lipoate synthase 38 25 Op 2 . + CDS 38711 - 39583 959 ## COG4470 Uncharacterized protein conserved in bacteria + Term 39609 - 39662 8.0 - Term 39596 - 39650 12.0 39 26 Tu 1 . - CDS 39696 - 40049 441 ## GYMC10_5970 hypothetical protein - Prom 40172 - 40231 5.1 + Prom 40435 - 40494 3.3 40 27 Tu 1 . + CDS 40526 - 42085 1105 ## COG1193 Mismatch repair ATPase (MutS family) 41 28 Op 1 . - CDS 42244 - 43056 789 ## COG0061 Predicted sugar kinase 42 28 Op 2 . - CDS 43068 - 43745 173 ## - Prom 43810 - 43869 3.4 43 29 Tu 1 . - CDS 44035 - 45261 1083 ## COG3314 Uncharacterized protein conserved in bacteria - Prom 45360 - 45419 2.7 + Prom 45324 - 45383 5.5 44 30 Tu 1 . + CDS 45605 - 45991 331 ## COG2346 Truncated hemoglobins 45 31 Op 1 . - CDS 46084 - 47199 1134 ## COG2199 FOG: GGDEF domain 46 31 Op 2 . - CDS 47238 - 47477 99 ## GYMC10_5489 hypothetical protein 47 31 Op 3 . - CDS 47479 - 47646 241 ## - Prom 47680 - 47739 3.8 + Prom 47630 - 47689 3.5 48 32 Tu 1 . + CDS 47884 - 49686 2162 ## COG1164 Oligoendopeptidase F + Term 49713 - 49761 2.6 - Term 49701 - 49749 6.4 49 33 Tu 1 . - CDS 49872 - 51188 1051 ## COG0840 Methyl-accepting chemotaxis protein - Prom 51335 - 51394 7.4 + Prom 51333 - 51392 8.1 50 34 Tu 1 . + CDS 51479 - 51844 354 ## GYMC10_5486 hypothetical protein + Term 51867 - 51897 1.0 - Term 51848 - 51892 6.1 51 35 Tu 1 . - CDS 51923 - 52150 297 ## PPE_03933 small, acid-soluble spore protein 1 (SASP) - Prom 52213 - 52272 6.3 52 36 Tu 1 . + CDS 52440 - 53081 786 ## COG3341 Predicted double-stranded RNA/RNA-DNA hybrid binding protein + Term 53087 - 53132 11.1 + Prom 53159 - 53218 4.9 53 37 Op 1 16/0.000 + CDS 53289 - 54401 1427 ## COG1879 ABC-type sugar transport system, periplasmic component + Term 54417 - 54454 2.6 54 37 Op 2 21/0.000 + CDS 54474 - 55994 1593 ## COG1129 ABC-type sugar transport system, ATPase component 55 37 Op 3 . + CDS 55984 - 56970 1190 ## COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components + Term 56985 - 57026 9.7 - Term 56975 - 57012 8.0 56 38 Tu 1 . - CDS 57061 - 57474 480 ## - Prom 57519 - 57578 6.3 57 39 Tu 1 . - CDS 57780 - 57896 159 ## - Prom 58005 - 58064 4.2 + Prom 57867 - 57926 4.4 58 40 Tu 1 . + CDS 58078 - 59112 1344 ## COG0628 Predicted permease + Term 59114 - 59171 21.4 59 41 Op 1 . - CDS 59801 - 60829 694 ## BcerKBAB4_3910 acetoin transport permease protein 60 41 Op 2 8/0.000 - CDS 60819 - 61709 837 ## COG1131 ABC-type multidrug transport system, ATPase component 61 41 Op 3 . - CDS 61723 - 62100 423 ## COG1725 Predicted transcriptional regulators - Prom 62197 - 62256 3.6 62 42 Op 1 . + CDS 62352 - 63215 883 ## COG1408 Predicted phosphohydrolases 63 42 Op 2 . + CDS 63348 - 63515 295 ## + Term 63563 - 63611 15.1 + Prom 63574 - 63633 4.6 64 43 Op 1 3/0.077 + CDS 63687 - 64472 247 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 65 43 Op 2 . + CDS 64492 - 66180 1779 ## COG0366 Glycosidases + Term 66366 - 66397 3.2 + Prom 66610 - 66669 3.9 66 44 Op 1 2/0.077 + CDS 66835 - 68763 1734 ## COG1010 Precorrin-3B methylase 67 44 Op 2 . + CDS 68826 - 70004 832 ## COG2138 Uncharacterized conserved protein 68 44 Op 3 . + CDS 70001 - 70780 794 ## COG2099 Precorrin-6x reductase 69 44 Op 4 5/0.000 + CDS 70780 - 71430 796 ## COG2082 Precorrin isomerase 70 44 Op 5 6/0.000 + CDS 71441 - 72577 1177 ## COG1903 Cobalamin biosynthesis protein CbiD 71 44 Op 6 . + CDS 72574 - 73830 1156 ## COG2241 Precorrin-6B methylase 1 72 44 Op 7 9/0.000 + CDS 73827 - 74603 926 ## COG2243 Precorrin-2 methylase 73 44 Op 8 12/0.000 + CDS 74600 - 75376 925 ## COG2875 Precorrin-4 methylase 74 44 Op 9 . + CDS 75373 - 76719 1106 ## COG2073 Cobalamin biosynthesis protein CbiG 75 44 Op 10 2/0.077 + CDS 76749 - 78329 1370 ## COG1797 Cobyrinic acid a,c-diamide synthase 76 45 Tu 1 . + CDS 78481 - 79053 576 ## COG0778 Nitroreductase 77 46 Tu 1 . + CDS 79489 - 80472 1199 ## COG0180 Tryptophanyl-tRNA synthetase - Term 80473 - 80505 4.7 78 47 Tu 1 . - CDS 80509 - 80700 255 ## - Prom 80741 - 80800 4.1 + Prom 80697 - 80756 4.1 79 48 Op 1 . + CDS 80829 - 81065 142 ## PPE_03933 small, acid-soluble spore protein 1 (SASP) 80 48 Op 2 . + CDS 80971 - 81186 77 ## - Term 81150 - 81181 5.5 81 49 Tu 1 . - CDS 81219 - 82202 866 ## COG1988 Predicted membrane-bound metal-dependent hydrolases - Prom 82239 - 82298 5.0 + Prom 82203 - 82262 2.6 82 50 Tu 1 . + CDS 82291 - 82584 189 ## gi|304408178|ref|ZP_07389827.1| conserved hypothetical protein + Term 82683 - 82715 5.3 - Term 82668 - 82706 8.3 83 51 Op 1 . - CDS 82719 - 83216 517 ## Bcell_4137 spore coat protein GerQ - Term 83321 - 83355 1.1 84 51 Op 2 . - CDS 83378 - 84073 717 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 84175 - 84234 4.9 + Prom 84137 - 84196 7.1 85 52 Op 1 2/0.077 + CDS 84379 - 85368 1077 ## COG0109 Polyprenyltransferase (cytochrome oxidase assembly factor) + Term 85405 - 85438 4.7 86 52 Op 2 . + CDS 85453 - 86085 761 ## COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems + Term 86099 - 86153 5.2 - Term 85986 - 86023 1.4 87 53 Tu 1 . - CDS 86093 - 86440 339 ## COG1658 Small primase-like proteins (Toprim domain) - Prom 86501 - 86560 6.7 - Term 86574 - 86627 15.8 88 54 Op 1 . - CDS 86647 - 86742 192 ## - Prom 86772 - 86831 1.7 89 54 Op 2 . - CDS 86854 - 88134 1205 ## COG0477 Permeases of the major facilitator superfamily 90 55 Op 1 . + CDS 88276 - 88431 226 ## 91 55 Op 2 . + CDS 88489 - 88911 605 ## Pjdr2_4871 hypothetical protein 92 55 Op 3 . + CDS 88956 - 90101 1337 ## COG1305 Transglutaminase-like enzymes, putative cysteine proteases + Term 90103 - 90140 6.0 + Prom 90153 - 90212 3.9 93 56 Tu 1 . + CDS 90250 - 92295 2376 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 + Prom 92655 - 92714 4.3 94 57 Op 1 . + CDS 92764 - 94638 2050 ## COG0367 Asparagine synthase (glutamine-hydrolyzing) + Prom 94640 - 94699 3.2 95 57 Op 2 . + CDS 94738 - 95490 1034 ## COG0561 Predicted hydrolases of the HAD superfamily 96 57 Op 3 . + CDS 95532 - 96008 614 ## COG2839 Uncharacterized protein conserved in bacteria 97 57 Op 4 . + CDS 96094 - 96816 872 ## COG4813 Trehalose utilization protein + Term 96838 - 96875 7.1 98 58 Tu 1 . + CDS 96892 - 98553 1907 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid + Term 98663 - 98715 -0.3 99 59 Tu 1 . - CDS 98708 - 100015 1026 ## Pjdr2_3738 hypothetical protein - Prom 100084 - 100143 2.4 + Prom 100060 - 100119 3.1 100 60 Op 1 . + CDS 100237 - 101811 1849 ## GYMC10_6164 copper amine oxidase domain protein + Term 101855 - 101890 8.1 101 60 Op 2 . + CDS 101952 - 102434 301 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Term 102480 - 102523 10.5 - Term 102466 - 102511 12.2 102 61 Op 1 . - CDS 102550 - 102747 76 ## Dhaf_0785 hypothetical protein 103 61 Op 2 . - CDS 102756 - 103598 1042 ## COG0330 Membrane protease subunits, stomatin/prohibitin homologs - Prom 103623 - 103682 4.6 + Prom 103623 - 103682 6.1 104 62 Op 1 1/0.231 + CDS 103817 - 104161 496 ## COG0526 Thiol-disulfide isomerase and thioredoxins + Term 104206 - 104241 7.4 + Prom 104321 - 104380 4.8 105 62 Op 2 . + CDS 104458 - 105489 1290 ## COG1612 Uncharacterized protein required for cytochrome oxidase assembly + Term 105572 - 105629 17.1 106 63 Op 1 . + CDS 105907 - 106728 570 ## Pjdr2_4856 hypothetical protein 107 63 Op 2 . + CDS 106637 - 107425 903 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) + Term 107462 - 107494 7.0 - Term 107450 - 107482 7.0 108 64 Tu 1 . - CDS 107490 - 107738 300 ## COG0694 Thioredoxin-like proteins and domains - Prom 107903 - 107962 6.4 + Prom 107832 - 107891 9.9 109 65 Op 1 . + CDS 107945 - 108187 72 ## + Prom 108190 - 108249 2.3 110 65 Op 2 . + CDS 108276 - 108530 264 ## COG4844 Uncharacterized protein conserved in bacteria + Term 108541 - 108583 5.4 - Term 108523 - 108579 12.1 111 66 Op 1 . - CDS 108585 - 109649 1318 ## COG1252 NADH dehydrogenase, FAD-containing subunit 112 66 Op 2 . - CDS 109730 - 110833 986 ## COG1060 Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes - Prom 110995 - 111054 4.8 + Prom 111114 - 111173 3.3 113 67 Tu 1 . + CDS 111206 - 111383 159 ## Predicted protein(s) >gi|333607086|gb|AFDH01000043.1| GENE 1 1736 - 2521 253 261 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163802692|ref|ZP_02196583.1| 30S ribosomal protein S21 [Vibrio campbellii AND4] # 5 261 6 271 271 102 27 1e-20 MFTTIHGLKTFYEERGSGPAVLLLHGFPLDHRMWQEQIAALESNYRVIAPDLRGFGQSEP HKDLITLDHMADELLLLLDQLQVEKAVLAGFSMGGYVAFNLLRKAPDRFNGLILANTRPD ADPLEGQINRMKMAASLLEQGPQAASKAMIPKLLSEVEGSGLAGELQDQIDGMNPLGLVH ASLAMAFRKDSTELLPTIQAPTLVIGGEKDAITPPAIMKKMADSIPNATYTEIKNSAHLT VREHPDQVNKAITDYLSHLHS >gi|333607086|gb|AFDH01000043.1| GENE 2 3551 - 4501 648 316 aa, chain + ## HITS:1 COG:BH2000 KEGG:ns NR:ns ## COG: BH2000 COG0179 # Protein_GI_number: 15614563 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) # Organism: Bacillus halodurans # 1 298 1 307 319 245 43.0 8e-65 MKLLTFLGEHGPRLGIRLEQGVLDVAEALKNMKGYEEGSVPTHMDQVIKGGPEAIQSLQK LIDDLPGTSENEPYLLEESPLVFAPCVTEPGKIICVGLNYQKHAEETKSPIPEHPVLFNK FNNALTGHKCDVSLPNVTSELDYEAELVIVIGQKAKDVSKEEAAQYIFGYTCGNDLSARD LQRRTNQWLLGKSCDGFLPLGPYIVTGDEIGNPNELKIRSLVNGEQRQSSTTADMIFKVE ELVSYISRHMTLLPGDIILTGTPEGVTIGYPREKRVYLKDGDQLSVEIEKIGTLSNKVVA EAKVEEGKPVGRTLGV >gi|333607086|gb|AFDH01000043.1| GENE 3 4808 - 5179 203 123 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|167463115|ref|ZP_02328204.1| ## NR: gi|167463115|ref|ZP_02328204.1| hypothetical protein Plarl_11207 [Paenibacillus larvae subsp. larvae BRL-230010] # 1 123 1 127 127 154 69.0 3e-36 MAKKSWSTQEMERLCMLSKECPPSVIAKELARPVTSVRKKLREIGVTYVKGDEWKRKQVQ MLISDEARGELPRRNKQELTEEAQVLNEFWTTLLSMASVAKKKGKRVDVLSFIDTYRKIK LGG >gi|333607086|gb|AFDH01000043.1| GENE 4 5296 - 5982 467 228 aa, chain + ## HITS:1 COG:BS_yflK KEGG:ns NR:ns ## COG: BS_yflK COG2258 # Protein_GI_number: 16077832 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 5 210 8 213 221 236 52.0 2e-62 MAPQIVSINVGKPKKIVYQGKEVETGIYKEPVHQPLFLSTTQLEGDGQADLKVHGGPDKA LCVYSADHYDYWEKELGQPLSFGAFGENITVSGLKEEEICIGDIYELGEALVQVSQPRRP CFKLSVRYSDVKLPVKLQDTGYTGFYFRVLKEGIIPENPVFRLVTKHAQGLTVEFVNTCK YHDKNNIPNIRIILANEALAESWRGSFEKKLAEADDLADPTQSGGVKE >gi|333607086|gb|AFDH01000043.1| GENE 5 5979 - 6989 587 336 aa, chain + ## HITS:1 COG:lin1039 KEGG:ns NR:ns ## COG: lin1039 COG2896 # Protein_GI_number: 16800108 # Func_class: H Coenzyme transport and metabolism # Function: Molybdenum cofactor biosynthesis enzyme # Organism: Listeria innocua # 6 336 3 333 333 447 60.0 1e-125 MTSSGVLKDKFNRIHDYLRISVTDRCNLRCVYCMPEEGMTFEPDERLLNYDEITEVVRVL AGMGVRKLRITGGEPLVRRDLYVLIRQLAAVPGIEDIALTTNAVFFAQQAERLREAGLTR INISLDSLRPDRFKLITRGGDVTRVMAGIEAAQRVGLYPVKLNVVLMQGLNDDEIDDFLQ MTVDKDIQVRFIEYMPIGHQDDTWKLRYVPLSSVLDRCSERGWKVEEIQSVKGNGPSQNY RIAGGKGSFGLIHPVSDHFCASCNRLRLTADGNIKPCLYWSHEFNVRPLIGDDRAIRELF YKALDVKPESHEMAKALQGDEPSHLPTVRRMSQIGG >gi|333607086|gb|AFDH01000043.1| GENE 6 7039 - 8238 935 399 aa, chain + ## HITS:1 COG:BH1812 KEGG:ns NR:ns ## COG: BH1812 COG4552 # Protein_GI_number: 15614375 # Func_class: R General function prediction only # Function: Predicted acetyltransferase involved in intracellular survival and related acetyltransferases # Organism: Bacillus halodurans # 1 399 1 386 386 248 36.0 2e-65 MSEIRRLRREELRDSLDLSMYAFQYELQEEELVERLATMNPEETWGYFIVGKLASKLTLL DFTTWINGKKLKMGGIAGVASWPENRRQGMVGQLLSKALEVMKENGQTLSYLHPFSFAFY RKYGWELAMTFKKIELQTAQLPKLGAAEGRIIRTAPSAASLNPIYDVYAAQFNGPITRSE EWWETRLLKKKGHMAVYLNAAGEPRGYVHYWIENHECKIHQLVYLDQDAKRGLWKFVGDH DSMFDKLIMQAPPDEDLAFEMDDPRIKQELVSYFSARIVDVEGLLGQLQLRHTGLPQEAS LRLHVTDGQAPWNHGTFELRLNAPEGSAVVVKTADEPLGGSGAAADGLACDIRTLSVLLL GAKSVGELHRIGRLQGDERSVELLAAVLPRRTCYLPDFF >gi|333607086|gb|AFDH01000043.1| GENE 7 8452 - 9390 920 312 aa, chain - ## HITS:1 COG:no KEGG:DSY1549 NR:ns ## KEGG: DSY1549 # Name: not_defined # Def: hypothetical protein # Organism: D.hafniense # Pathway: not_defined # 1 289 1 289 312 135 31.0 2e-30 MREDWKYRYDEVLKKESLLQTVNKQLEKAQVRLKQAGGQRTAAEKALKSETRDVERLEKA SLTNLFYTVLGRKVEKLEKEEAEAIQARIRAEETRLAEEELARMTAELEQRRSSLLGWEE EAAALLQEKEEWLRGRSEDFRQQLNRLYEAKRRALSEGKELDEALQAGYELVESLEEAEN LLRSAKSWGTYDMFGGGVIATHLKRSKANEAMEQIEYAQGLMSRFKRELEDVGGAAEMNL DYNGFLGFADYFMDGFIFDWIVQGRISDLKDAVSENIDRLRQLLHALQQRYEARLTDEAG LTRDIHLLIERS >gi|333607086|gb|AFDH01000043.1| GENE 8 9522 - 10139 355 205 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|167463118|ref|ZP_02328207.1| ## NR: gi|167463118|ref|ZP_02328207.1| hypothetical protein Plarl_11222 [Paenibacillus larvae subsp. larvae BRL-230010] hypothetical protein PL1_2266 [Paenibacillus larvae subsp. larvae B-3650] hypothetical protein PL1_2266 [Paenibacillus larvae subsp. larvae B-3650] # 69 194 21 147 151 96 36.0 1e-18 MTKLNAGARTALIALLCTAAAGFVPASAISAQAPGTGLSSFDTSGAESSGIILPHGPWTA RLQATPSHAVPPSSGAFSREIRAQLYDVDKQKVVETLVVTDEIRLEASRWLASIKDIAVQ TKIDNVQGVVLKLPLDPPLAVNNRWMQGSSNELFLFLDPSRLNEPLLLVFSTTGKPFLFK TSVQVKPFLEKERLLRYLKPVPASG >gi|333607086|gb|AFDH01000043.1| GENE 9 10454 - 11116 852 220 aa, chain + ## HITS:1 COG:BH1198 KEGG:ns NR:ns ## COG: BH1198 COG4758 # Protein_GI_number: 15613761 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Bacillus halodurans # 90 218 136 268 270 77 30.0 2e-14 MEQQMKNNRHRNTAMLLIALGIFLILERWVGIFVVIALLLMFFGFYKVRYENEKKGVAFM GVGAVILLGNNFSLVLAVILISLGIFYIKSKKVQPGDDFIQKQTLIDSIRPGKEPWVLKD SSIWFIIGEAHLDLSYAILEKKETTLVLQGIIGDVRLIVPEEIGVSIEASVTIGQISSPL EKESGVINKLNWISPNYETREHQVKLIVSYIVGDIDVRML >gi|333607086|gb|AFDH01000043.1| GENE 10 11155 - 12213 915 352 aa, chain + ## HITS:1 COG:BS_yvqE KEGG:ns NR:ns ## COG: BS_yvqE COG4585 # Protein_GI_number: 16080362 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Bacillus subtilis # 5 348 3 347 360 280 45.0 4e-75 MDSYKKRLTNMIWRSMAESIVLCLAVLTFIVYVLYTAKFITPPETWAQGIKIGAMLVGGS IILGAAYGYWSSNRTTRRLELLMETMQMLEIGSISRSTLPPLGEDEIGRLGEQLGRILKK WEEQVASLQRLSNNNAQLAEKARVSAIIEERQRLARELHDAVSQQLFAISMTATAALRTL DKDFEKAQRQIHLIEEMSSVAQSEMRALLLHLRPVHLEGKQLSEGLIRLLQELKAKVPMD IIWEVDDEIALSKGIEDHLFRIVQEAMSNALRHSKATRLELRMQQKSGWVRLLIRDNGVG FDLDEEKQTSYGLSTMRERVNEVGGSLQLVTAPGSGTRIEIRVPIMTEGEEA >gi|333607086|gb|AFDH01000043.1| GENE 11 12219 - 12854 779 211 aa, chain + ## HITS:1 COG:BS_yvqC KEGG:ns NR:ns ## COG: BS_yvqC COG2197 # Protein_GI_number: 16080361 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Bacillus subtilis # 1 209 1 209 211 251 62.0 5e-67 MVKVLLVDDHEMVRIGLAAVLGTEEGIEVVGEASNGEDGIRLAQEYKPDVVLMDLVMEGM DGIETTRKLLQLYPDCKVIVLTSFLDDEKMYPVLEAGAFSYLLKTSRATEIAQAIRAAAK GQSILESQVASKLMNRFRQPKPAAAPHEDLTEREMEVLRLIAAGKSNQEVADDLFIGIKT VKFHVTNVLAKLGVEDRTQAAIYAFKHGLAE >gi|333607086|gb|AFDH01000043.1| GENE 12 12904 - 13362 180 152 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MYIVTPQYVNETYRSHSHLFRIQAIRRMNGLGPVSPRGPFPEMLYTRQDRSGKAGPAEQG QTSGLPAEQRDSASGKDAQRQSGMPAMLRRLGETNEWKRPKDDDHSRPAEQSEEAEESLV QTHAAMQQMKLNKALQAYRPFVRKPIALESAV >gi|333607086|gb|AFDH01000043.1| GENE 13 13629 - 13718 105 29 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNGSTILVIIGFLVLCVVFMWGMSKKYKK >gi|333607086|gb|AFDH01000043.1| GENE 14 13816 - 14253 323 145 aa, chain + ## HITS:1 COG:mlr0751 KEGG:ns NR:ns ## COG: mlr0751 COG0454 # Protein_GI_number: 13470923 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Mesorhizobium loti # 1 127 1 127 156 65 30.0 4e-11 MIRKRIPAKDDRLLVRLTEKELLPYTRMTVPEADVNLSEMKKRFKLGETFVADEGAQAAG FVSVQVSDDSLFVDMLAVDSRFQGRGLGTSLMEHAERYGRKLKCRASRLYVDSVNEKAIS FYLSKGYSVKSYVPQLRLHLMEKEL >gi|333607086|gb|AFDH01000043.1| GENE 15 14341 - 14661 167 106 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|322381415|ref|ZP_08055414.1| ## NR: gi|322381415|ref|ZP_08055414.1| hypothetical protein PL1_2260 [Paenibacillus larvae subsp. larvae B-3650] hypothetical protein PL1_2260 [Paenibacillus larvae subsp. larvae B-3650] # 1 105 1 104 104 65 40.0 1e-09 MQRIDPAKSEQIRPHIGRPVLVYLRDGAEIFGILSRLDQRNLILNEEPGVKNLSPKTTKK LKVAKKGGKKSVRLAAEESQPVIARPAGYTPIVLDRNFIAAIIVLQ >gi|333607086|gb|AFDH01000043.1| GENE 16 14764 - 16338 1677 524 aa, chain + ## HITS:1 COG:BS_yqjJ KEGG:ns NR:ns ## COG: BS_yqjJ COG0364 # Protein_GI_number: 16079442 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose-6-phosphate 1-dehydrogenase # Organism: Bacillus subtilis # 23 510 9 489 489 570 54.0 1e-162 MQFRYAYSNLKPQRKNDATMNGAVFLIFGATGDLAKRKLFPAFYSLYREGKLNEHFAVIG LARRSRTNEQFREDLRDSINEFARHHVQDDEDWAKFAEHFEYLPLDINNVDGFRQLNTLT QQLDVKFQTNGNRLFYLALAPELFGNVSYNLREGGLLETTGWHRLVIEKPFGYDLESAGK LNQQLRQVFEEKDIYRIDHYLGKEMVQNIEVVRFANAFFEPLWNNKYIANIQITLGETVG VEDRGGYYDHSGALRDMAQNHMLQMLAMMAMEPPSRLHPEDIRDEKVKVLRSLRPFESAE EVNKNVVRGQYTAGQLNGKEMPAYRSEESVNPESNTETYLAARVFVDNFRWAGVPFYIRT GKRLPVKSTEVVVEFKNVPDNVYLANKHDLQPNLLVFRVNPMEGIYLQMNAKKPGAEGVI IPIAMDFCQSCQVGLNTPEAYERLIFDAMRGDSTYFTRWDEVAHAWQYVDAIAQAWRENG GDLAHYPAGSWGPDAANELLAADGFKWWPVNGQHEGEVIWASQS >gi|333607086|gb|AFDH01000043.1| GENE 17 16478 - 17188 611 236 aa, chain + ## HITS:1 COG:BS_yvcP KEGG:ns NR:ns ## COG: BS_yvcP COG0745 # Protein_GI_number: 16080525 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Bacillus subtilis # 1 227 1 228 237 269 59.0 4e-72 MYRILIVEDDDKIAHILKDTLTKYGYEVFRAVRFHDIKGEASELEPDLILLDINLPRYDG FYWCRQIRTFSNVPIIFLSARTGEMDQVMAIENGGDDYLTKPFNLDVVLAKVKGSLRRAY GEYAQAQPSRDEWELNGLKLDRMKNSLEFAGKRMELTKNELLLFDCLAQKAGSIASREEL LEALWDDVHFVDDNTLTVNVTRVRRKLEEIGLPGIIETVRGQGYRLQTEWGNTGDA >gi|333607086|gb|AFDH01000043.1| GENE 18 17181 - 18293 983 370 aa, chain + ## HITS:1 COG:BS_yvcQ KEGG:ns NR:ns ## COG: BS_yvcQ COG0642 # Protein_GI_number: 16080524 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Bacillus subtilis # 9 358 3 350 356 279 43.0 8e-75 MHDKAWTWKRFLFDRLLYTAAFFFAILLILVVLWLDRMEAGLPVKSDNLVYLFLLAGAVW TAVLIYDYVRQAGYASALNKRLGESAQSSLDHALFLPPRTQEQQAVNELLQKQHRAYLST LSSYRAAQEQHLHFTNQWVHQLKTPVSVIDLLIQQSEGAPGPRDGMKELLSSIQEENEKI ASGLQMMLYTARLEKFELDVHPRRIELTAVARRVVNDYKKACIRASIFPKIESSAPDIYV ETDEKWLSFVLHQLIGNAIKYSRKREGNKPLLIRIEEQSYGIRLSVQDSGIGIAPEDLPR VFDAFFTGENGRGVVTESTGMGLYLVKQVMSRLGHRVDIQSEPGQGTTVSLMFQSQGLHR FGERDGAGGE >gi|333607086|gb|AFDH01000043.1| GENE 19 18408 - 19184 671 258 aa, chain + ## HITS:1 COG:BS_yvcR KEGG:ns NR:ns ## COG: BS_yvcR COG1136 # Protein_GI_number: 16080523 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, ATPase component # Organism: Bacillus subtilis # 1 258 1 259 259 335 64.0 5e-92 MAVLKAEQVTKIYGTKSNLTYKALENIGLEIGEGEFVGVMGPSGSGKTTLLNILATIDKP TSGHIEINGTDPAALSGKQLALFRRRELGFIFQDFNLLDTLSIRENIILPLALDKKPVAE IESRLKPCAELLGITAILDKRTYEVSGGQKQRAAIARAIIHRPSILLADELTGNLDSKAA KDVMESLKELNEQLGATIMMVTHDPFAASYCKRIVFIKDGKLFSELRRGANRQAFFQQIL DSLSVLGGNFDEFSTARP >gi|333607086|gb|AFDH01000043.1| GENE 20 19159 - 21096 1697 645 aa, chain + ## HITS:1 COG:BS_yvcS KEGG:ns NR:ns ## COG: BS_yvcS COG0577 # Protein_GI_number: 16080522 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Bacillus subtilis # 1 640 1 643 646 445 39.0 1e-124 MNFRQLALKNIRGNWHQYGAFFWSSVFSVTIFYIYSAFILHPDVINGSMPAASKIREVMI ACDYIIIIFSFFFILYSMSAFFKSRKKEFGLLTLFGMTKGQIRWMVLLENVIISILAVAC GIGIGSLFSKLFFMGLARLLDVDSPIRFVIPLKAVLLTVIGFLLLFLTITLLTLYQVGRA EIIDLLRASKQPKKMPAFSIWLVVLSAVCLIGGYTLAYQITVMNFILYFLPVVFLTVLGT YFLFTQGSVFILRRLQRRTSLYYNQTNLITISQLTFKLKDNARMLFMVSILSAVILSASG TVYVILKDTRNQLMEHYPQSIAFAEKGLDSHRVLDPDVLKNTLKQNGVELDYEVRMAGIP VRVPVELGGRVREQQLFIVSEDDYNTQARRLSKPELRVERGHASYIYPYKEQQRKSFTSG QNLEAKLKTGTRTFTLDEQINGSVFPTQFDISTLLVTDASEFKEMMDSTPNEDKSVLYGY EIKNWEEASPTVHQIEKMVPEQEKQNFGTRVNQYLETKQMMSLMLFIGIFVSFLFFIASG SMIYFKLFTEIEEDQAQFRALTRIGITDQEIRRTVSKQVGMIFFIPLVVGLVHTSFAMKA LGNMLISNIWPYAAVVFVIFALMQTLYFLAARRSYMKRILAHSVR >gi|333607086|gb|AFDH01000043.1| GENE 21 21290 - 21853 483 187 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_4371 NR:ns ## KEGG: Pjdr2_4371 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 1 172 1 175 189 126 35.0 4e-28 MYRKGDSLDDFILFDRIWTRVWQQQGFELEFTRRDADCYLILSEDGEAAGTVEFKRYDSG RHPLDALAPFSEHPALAPGKAVEVDKVALLPEYRGRNLDKLISLIVHYCENRGCTHIVAL MEPKLCKALRMAFRIKLERIAEPFHYKGGMVVPVVCDVSRLYLNKHGYGWLLPNPEQPEI VLPAVGS >gi|333607086|gb|AFDH01000043.1| GENE 22 21901 - 23367 1274 488 aa, chain - ## HITS:1 COG:BH1509 KEGG:ns NR:ns ## COG: BH1509 COG0840 # Protein_GI_number: 15614072 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Methyl-accepting chemotaxis protein # Organism: Bacillus halodurans # 5 484 6 487 500 196 28.0 6e-50 MESKDLLFKRNKLLNRILWIMLALGIVIDLMTASLEVVLVLAVVGIVICGISTLMSVKHI APQLVMYIVPVNVTVLTALLIYAEPLTSTYYLIFVNIALMTLYSNYRPIVFSGILGGALT AFLFIQPRFYEAMFPKESLANLLLYVAMITAASAASARFSEKLQTEVLEKQAETLDAKTQ TDSLLEQVGSTVQVLNEFNDTLKTNVATAGKISQEVTATFGEVSTSVEHQTQIVVDISSY VQEVERVVSSVADGSGTLQRLSTENIGLTNQGSEQVHALSAEIETVYSIIHQTVHLMNDL NEQGVRIGSMVGLINDITSQINLLALNAAIEAARAGEHGKGFAVVSDEVRKLAENSRRST EEINDILQGIRHTSIEVTKQVNLGKQAITAGRAANEQVESIIQRVADNTGLVKNQSDHVE ESVALLQEEYRKISHEIVAIAGSTEQNMASFEEIMAGLENHDARIKDIVTSYQRLDSLIT NLKAMTRG >gi|333607086|gb|AFDH01000043.1| GENE 23 23560 - 24642 925 360 aa, chain + ## HITS:1 COG:no KEGG:Clocel_3655 NR:ns ## KEGG: Clocel_3655 # Name: not_defined # Def: metallophosphoesterase # Organism: C.cellulovorans # Pathway: not_defined # 71 346 44 308 313 99 25.0 2e-19 MDRRSFLKWLTAFFAILLGAGAGTVLSGLRRKSGLSDREAAVVQAEEAEELPAGEDLQLP DDPQAGKALATFAIMSDLHASPDDPLTLEHLKSALSDMTAMKQPVDVLFLTGDCTDYGRE RDYKELGRLMKAYKLPPVHANMGNHEYYDLWLDKAGKFNREGMPNGKTDAMARERFLTFF GYKQPYNRMDLEGCTILLLSQEGYMQEKPEAGEGAWYTDAQMEWFKAQLAGLDKTARIFI MIHQPLPMQGRSGGSHQIVRGKEIRELIAPYKNVFVFCGHRHQDFQNGSAHYLQEPFHYF HNSSVGRTLNKALPDARKSKTQGLYVQVFENKVVVRGREYAQRRWLKEAHWTIALNKKSV >gi|333607086|gb|AFDH01000043.1| GENE 24 24710 - 26299 1829 529 aa, chain + ## HITS:1 COG:CAC0630 KEGG:ns NR:ns ## COG: CAC0630 COG4108 # Protein_GI_number: 15893918 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Peptide chain release factor RF-3 # Organism: Clostridium acetobutylicum # 8 519 3 516 526 629 60.0 1e-180 MSTPLQKELQTEAAKRRTFAIISHPDAGKTTLTEKLLLFGGAIRLAGTVKGRKVGKYATS DWMEIEKQRGISVTSSVMQFDYLGHKINILDTPGHQDFSEDTYRTLTAADSAVMLIDVAK GVEAQTIKLFQVCRMRGIPIFTFINKLDREGRDPFELLEELEQVLGIRSYPMNWPIGMGK RFCGVYDRQRTQLELFQGDDHKQVAVRKVEGYEDPVIKEIAGEHMYEQLGQELELLDVAG DPFDYEKVMKGELTPVFFGSAVNNFGVQTFLENFLELAPAPEPRKNTQGEMVEPTKENFS GYVFKIQANMNPAHRDRIAFLRIVSGKFQRGMSVKHVRAGKEIKLSQPQQFLAQDRDIVE EAYPGDIIGLFDPGIFRIGDSLSQKEEIVFDELPTFSPEIFSKVTVKNALKHKQYQKGID QLTEEGTIQVFRTTGAFDDTILGVVGQLQFEVFEHRMKAEYGVDIQLQRLGFQFARWIID EKIDPSRFRINSQLVTDKKGNYVALFESEYALRSAMEKNPNAQFLTNAP >gi|333607086|gb|AFDH01000043.1| GENE 25 26405 - 27124 457 239 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|304406554|ref|ZP_07388210.1| ## NR: gi|304406554|ref|ZP_07388210.1| hypothetical protein PaecuDRAFT_2886 [Paenibacillus curdlanolyticus YK9] hypothetical protein PaecuDRAFT_2886 [Paenibacillus curdlanolyticus YK9] # 28 148 24 147 239 79 39.0 2e-13 MRKKYGLPTVVLFFLAGLIGLLLNPYQASALDYALIPLRQLEEESDVIVTGTVLREQKSG MDNAYTLQLDQILKGDTNVRTPIKVNVLQFSDEGKMFPGERYLLLLKAGSPFIVSGVHQG LIRLSGVKPFSRFYTPDEITALLDKLGAKYKESSSAEPASPPPENASPSPDSVTDGVRPT ERAAPGPWEERKPAEPYLLSEWYGPLFLAAGLATGTITAFAAEKRARKQQTERDSHAPD >gi|333607086|gb|AFDH01000043.1| GENE 26 27299 - 28048 778 249 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_0007 NR:ns ## KEGG: Pjdr2_0007 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 5 242 6 243 253 240 51.0 5e-62 MRRYVVSKWVKTEAVLHSTAVRPHIPATRILSEESLRDMLNEYRMVYVKPDCGTFGRGVM RVDYNKQDAKPYRYQHRKTTRSFETCEDLYQSLKTATVGRKYLVQKGIRMLKHDKNVFDL RVMVQINPAGQWETSGMIGRVSQTGKVVTNYHSGGQLRSVETLLGSYLDAEELKRFKAKL KRLALGTAHALRSKYPGIREIGLDVAVDQELKPWVLEVNTKPDPYIFKVLKDKRIYAKVL RYYKYNKRK >gi|333607086|gb|AFDH01000043.1| GENE 27 28196 - 29692 1409 498 aa, chain - ## HITS:1 COG:lin1543 KEGG:ns NR:ns ## COG: lin1543 COG0642 # Protein_GI_number: 16800611 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 1 480 4 472 479 265 35.0 2e-70 MKFRLIPTRHRFTFFQRQFVSLLFLSLLVLVLVSFIFVYLFKIHIYDEKTEELESAGDTI SRLILREEVVPELTLSAYRTVLRERGISFIAMNAKGQLYFKDQRTTPPTFRSKTFMDSLL AQIPKLQSGKALIVEESGPDPYLVYPYELKLKHSDGKNYLFVMSPVKGMTQTLSRVYEMV VLAGIVVFVLAMIVALIVSRNMSRAVLSIRQATRRIADGRYDARCDLARTDELGDLSRDF NRMAEQLEFTSHKLERIEIKRRRFITDVTHELRTPLTSIRGIVEGLKSEYITGHEEQVKY YGIIEQETLRLIRLINELLDMEKIQNGLITLRREYYPLNDLLEVLKESFEFLIGDKDLHL EIDCPPDTLIYGDYDRLTQILINLIKNSIQFTSHGTIRMTARQTETATELSISDTGRGMT AEEMEQIWDRFYKADPSRSKDRSETGLGLSIVKRLMEAHDAEIRVSSVPGQGTTFRLRFP VKPGEAAHAGELPGEGEV >gi|333607086|gb|AFDH01000043.1| GENE 28 29694 - 30419 911 241 aa, chain - ## HITS:1 COG:BS_yclJ KEGG:ns NR:ns ## COG: BS_yclJ COG0745 # Protein_GI_number: 16077443 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Bacillus subtilis # 1 241 1 226 227 243 50.0 3e-64 MKLLVVEDDRSVCEMLRPFLEREGTVTFVHTGSEAESLIREASWNLIILDWMLPNRSGIE LCRMIRTTQDTPVILLTARGEEGDRVLGLESGADDYITKPFSPLELLARIKAIMRRYHSG PGSMADNGAAESAFPEDLVEDNGERLVHKDIKVDTSTREVYVGPDKFTNLTPREFDLISL LVRYPKRVFTREQLLEAVWGYDFYGDERTVDVHIKRLRTKIGSAERPLIATVWGVGYKLE E >gi|333607086|gb|AFDH01000043.1| GENE 29 30779 - 31822 1007 347 aa, chain + ## HITS:1 COG:BH3692 KEGG:ns NR:ns ## COG: BH3692 COG1609 # Protein_GI_number: 15616254 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus halodurans # 1 345 1 337 337 171 33.0 2e-42 MVTRKDVAKMAGVSEATVSRVFNNVGPMKESTKQKVLAAAKELNYHPNAVARSFALGKSG HIGLILPYVPKVHLFSTYYFSEILSGIGEGVRRHGCDMLVMFRSPHESVDYTEPYRSRKV DGCIFLGALDVPAQREGFRELDRQGMPFVLINQHYEGETYSVVDADHEQGCYEAVKHLLE GGYRRIAFLNGSPQYSNSADRLRGYYRALNEAGLAPEPELILEGNYSRTSGYAAAARIAE LGGRVDAVFSSNDRMAVGLMQGLKERGIVPGEDLAIVGYDDSEAAKLSDPPLTSVYVPFF EMGLLAADALLKRINASPEEGELPDSFHERLSTKLVVRASSNPRPGN >gi|333607086|gb|AFDH01000043.1| GENE 30 32036 - 32758 677 240 aa, chain + ## HITS:1 COG:BS_ykrX KEGG:ns NR:ns ## COG: BS_ykrX COG4359 # Protein_GI_number: 16078424 # Func_class: E Amino acid transport and metabolism # Function: Uncharacterized conserved protein, possibly involved in methylthioadenosine recycling # Organism: Bacillus subtilis # 8 220 8 219 235 87 25.0 2e-17 MEKGQLVVVTDFDGTLMEQDVGATLMKELGVEDRPDVRGKLERFLNKEIGSREWIHTSYG LLGDRQEEVNAIADRMNLRDGAEEFLAYCKTKSIPVTILSDGMKYYIDRIMAANHVTVDT VISNPIQYGEDGAYTLGTQNMNPACSWCGCCKSGVVRKLKEEGCRVIYIGDGSSDIYGSA YADWVFARSSLARYLTREDISFFPFATFHDILKVVREREEHFLTDSPERREPAGHSFCKF >gi|333607086|gb|AFDH01000043.1| GENE 31 32869 - 33072 193 67 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_5503 NR:ns ## KEGG: GYMC10_5503 # Name: not_defined # Def: small, acid-soluble spore protein I # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 66 3 68 78 75 51.0 7e-13 MILSLRQAIVQRVEGKSNDELKEIIDDSIDGQEQALPGLGVLFEVIWKNIDSEKQSELVS ALHDHLT >gi|333607086|gb|AFDH01000043.1| GENE 32 33187 - 33846 793 219 aa, chain + ## HITS:1 COG:SA0939 KEGG:ns NR:ns ## COG: SA0939 COG0569 # Protein_GI_number: 15926674 # Func_class: P Inorganic ion transport and metabolism # Function: K+ transport systems, NAD-binding component # Organism: Staphylococcus aureus N315 # 1 214 1 214 220 233 51.0 2e-61 MKKQFAVIGMGRFGSSVAKNLTGLGFEVLALDHSEERIQEISTVVTHSVQVDCTDEEALR ALGIRNFDVVVVAIGENIQASILATLLLKDIGIPTIVVKAANDLHGKVLRKIGADKIIYP ERDMGQRVAHHLISPNILDYIELSSEHSILEMKANDRMVGKNLRDLDLRAKFQCNVIAIK RQEQLIIPPPVETPIQPGEILIVLGNNKDLKRFEVEYSE >gi|333607086|gb|AFDH01000043.1| GENE 33 33854 - 34675 223 273 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 [Bacillus selenitireducens MLS10] # 38 267 9 246 255 90 28 3e-17 MAQAYNQPDITSVQNNRVKEWAGLLDRKGRQKAGAFLIEGIHLVEEAVRAGAPVRTLVYE ADKGLPGTLADHAEAAGIETVSVTRPIMERCTDTETPQGIFAVVDKPAEPAETLLADPGS DLVVVVDGVQDPGNLGTIIRSADAVGASAVVLGRGTVDLYNPKAIRSTMGSLFHLPIVEA DLQELLPAAREAGRQIVVTSLQADSSCYALDMTRPTWLVVGNEGRGVSAAAGELATHRVI IPMQGQAESLNVAMATTVLLFEASRQRLAGSSV >gi|333607086|gb|AFDH01000043.1| GENE 34 34778 - 35299 437 173 aa, chain - ## HITS:1 COG:no KEGG:Bcer98_0708 NR:ns ## KEGG: Bcer98_0708 # Name: not_defined # Def: hypothetical protein # Organism: B.cereus_NVH # Pathway: not_defined # 9 172 1 156 156 177 56.0 1e-43 MEAITEAAMLTFEQKIAIMESFPELQRKNVSLGRVNFHYEDSAYDKKTVGYHFHPNGNGY IYAGQIQGAETDDKGLVNIRDYTEEQLRDLAGAAIRSLNAGLGASGPESDASSGTSAEGE DEQTWVNDDGHVLTVKPEDDMWFIHAGLNLDSVFESYEEAAEYLEEEGFARKK >gi|333607086|gb|AFDH01000043.1| GENE 35 35421 - 36233 844 270 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_1201 NR:ns ## KEGG: Pjdr2_1201 # Name: not_defined # Def: sporulation protein YunB # Organism: Paenibacillus # Pathway: not_defined # 5 253 14 262 291 275 55.0 2e-72 MIRQRWKSRPTRKQGWKKRLFFVLLIFMLVSLQSFIMIERNLKPPLMNLAKVRVKQIATE SINEAISDRISRGTDFEKLIDWKTDSSGKVSGFMLNYSEHMRITAETRGAVQSQLNRLTA IPEHIPLGQAMGSAILASFGPNIPIRITPAGAVKVDLSTRHENAGINMILVEVYIRIVAE VSVIIPFDSEPEIVETEIPISYSLVVGDVPMYYFDNKGNPVGSSKDAVPPSISLPNLKGQ PTAGSGGKQQPDAHTEGVTKPEGAEEKKAE >gi|333607086|gb|AFDH01000043.1| GENE 36 36499 - 37536 914 345 aa, chain - ## HITS:1 COG:BH3436 KEGG:ns NR:ns ## COG: BH3436 COG0739 # Protein_GI_number: 15615998 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane proteins related to metalloendopeptidases # Organism: Bacillus halodurans # 48 345 39 337 337 357 60.0 2e-98 MKGILPSKRLLAGLLTACLAAGPLTATAAEPVKVPPPAAKPQQPPDAERKELLQKVSEIT GIPWPLLAAVNRYEYTMNKSRKKDASERLIDIDFPELTWVGMLNPDHEDTDPGSISFFGG VGVDGSGDGLADRGNDLDRLAAMARLMLRHGNDPEDIRISLWEHYSNTRSVERIEQFADI YEKFGTLSLHEHAFPLPVKAEYSYRSTWGASRGWGGFRIHEGTDLFAGYGVPVRSTSYGI IEVKGWNPYGGWRIGIRDLDNIYHYYAHLSGFDKKIKEGDVVAPGQVVGWVGSSGYGKPG TSGKFPPHLHFGMYRDKGLADWPFDPYPSLKKWEREEFKKRAAGK >gi|333607086|gb|AFDH01000043.1| GENE 37 37794 - 38678 588 294 aa, chain + ## HITS:1 COG:BH3435 KEGG:ns NR:ns ## COG: BH3435 COG0320 # Protein_GI_number: 15615997 # Func_class: H Coenzyme transport and metabolism # Function: Lipoate synthase # Organism: Bacillus halodurans # 8 288 9 290 303 413 70.0 1e-115 MATKPLQRKPEWLKIKLNTDDNFKDLKNMMRSKTLHTVCEEAKCPNIHECWANRTATFMI LGDICTRACRFCAVKTGLPTELDLQEPERVADAAAQMGLKHCVVTSVARDDLKDGGATIF AETIRAVRSKVPFCSVEVLIPDFMGDEASLQIVMDAKPDILNHNIETVERMSDHVRAKAK YSRSLELLARAKKMNPDIPTKSSIMIGVGEEWDEILRTMDDLRRHDCDIMTIGQYLQPTR KHLAVEKYYTPEQFALLKEEGMKRGFKHVESGPLVRSSYHAHEQVRSASQTSAP >gi|333607086|gb|AFDH01000043.1| GENE 38 38711 - 39583 959 290 aa, chain + ## HITS:1 COG:BH3433 KEGG:ns NR:ns ## COG: BH3433 COG4470 # Protein_GI_number: 15615995 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 1 89 1 89 93 113 55.0 5e-25 MIHIGGRAYELVTEHRNGWNQEVFRDRYSEVLERYDYIVGDWGYNQLRLRGFFRENHSKA GKESSIVYLQDYLNEYCNFGCAYFILEKLPGKHTPPEQTEEEAAAEGTPKPSRHQGQGQG ASRAEAKQESREGKSDTREPRADHKQEARESRQEQRGSSNRSQRQQDGGRADAQVSQKQG KPRPPRQPRGDQQRGERSTDGKPHNQRQGGGQGQNNNQNNNQNNNQNNNQNNNQNNNQNN NQNNNQNNNQNNNQNNNQNNNQNNNQNNNRPKPSQAAETPAPQTGPESSE >gi|333607086|gb|AFDH01000043.1| GENE 39 39696 - 40049 441 117 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_5970 NR:ns ## KEGG: GYMC10_5970 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 111 1 111 116 126 63.0 3e-28 MTEQNHMVDKNGTLDTGKVNDVMNRMDTGEKDQILKNFDEFKSYLGSRVHLGESLGLGEE QLAKTAEKVAGYLAAHEEPRNAEENLLRELWNVGRDEERHMLAHMLVRLAQKANKAN >gi|333607086|gb|AFDH01000043.1| GENE 40 40526 - 42085 1105 519 aa, chain + ## HITS:1 COG:BH0376 KEGG:ns NR:ns ## COG: BH0376 COG1193 # Protein_GI_number: 15612939 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Bacillus halodurans # 1 510 1 512 571 382 42.0 1e-105 MNPNTLKRLNYEFIKQHLLEYAISYLGKERVESMMPMTGKEEIRSRLDETEQAKKLLERG RGAPIPSLEGIRDIMDLLGSGYIFSERNFCDIAQFLYSCTQLIRYMRSHAQAAPLVNMYT AEMNDLPALQAEIERCIRSGAILDTASKELLKIRKKKATAEERLKSKLASLANRYRSVMQ ENLISMRGGHYVLPIKKEHRKLVKGSVLDESASGQTVYMEPHEIVELQSQLSSLRREEAD EEMKILSGLTAMVEENRDAFRKNVEQVGIYDFLFAKAKYGLEIGGTNVKLSGEGKIDLRD ARHPLLGNRMVPLHFAIGEAYNSLIITGPNTGGKTLTLKTVGLLTLMAQSGLLVPAAEGS TLAVFTQIAVDIGDGQSLENNLSTFSAHIRNMMEILERADRSTLVLIDEMATGTDPGEGV ALSVAILEELQRRGATVTVTTHFNEIKNFAEAADGFENARMEFDPATLQPLYRLRIGEAG RSYAFLIAQKLGMPAGIIERSREIASEGTGRLADHGKTE >gi|333607086|gb|AFDH01000043.1| GENE 41 42244 - 43056 789 270 aa, chain - ## HITS:1 COG:BS_yjbN KEGG:ns NR:ns ## COG: BS_yjbN COG0061 # Protein_GI_number: 16078226 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted sugar kinase # Organism: Bacillus subtilis # 1 267 1 264 266 302 52.0 4e-82 MKYFLVQRQDDVSAGLARRFHELAGQYGMELDEQEPEVVVSIGGDGTMLIAFHQFADKLD RISFVGIHTGHLGFFADWKPDQLDYLVELMHNGEINQDMRIVQYPILEIEIHSSQGVEQR LALNEFTLKGIENTLVAQVDINDEMFEMFRGDGICVSTPSGSTAYNKSLGGAIVHPSLAA IQIAEIASINNRVYRTLGSPMLLPMHHHCDIYPKSKHPVYLAFDYQYVQRSDVESIRCRV SPNLKVKFARYRPFPFWNRVREAFIGQEFQ >gi|333607086|gb|AFDH01000043.1| GENE 42 43068 - 43745 173 225 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNWTYALTQHILVPKTECKLIIVGETADGQPFCLETRVFLREAGLDFFSVHVYFDLANPL DKLEQISFIEFSFQDQGINYYSFVDLVQLDPGVSSCVLKLVSPQELYSYQNRRHCRKPLP PHTNATCRVIGARQRSAEETPAFVGQLLEISRSGTSMITPHRMIESLMLELSFHLPEVEA PLLLTGEVRSSTPFSSDSYRVGIEFHDVPLSSLNLIDTYCEQTSS >gi|333607086|gb|AFDH01000043.1| GENE 43 44035 - 45261 1083 408 aa, chain - ## HITS:1 COG:BH2588 KEGG:ns NR:ns ## COG: BH2588 COG3314 # Protein_GI_number: 15615151 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 12 349 12 346 411 271 42.0 1e-72 MSRRSVFTLIPLCVLIIGIAALMVAYPRESLAAAVHGVAIWWGVLFPALFPFFVISEVLL GFGIVHFFGMIFDPMMRPVFRIPGIGGFVVAMGFASGYPVGAKLTSQLWKDRLVNREEGE RLVAFTTSSDPIFLIGAVCVGFFHDASLAAVLAAAHYGGALLVGFLMRFHGRGAPSTPAP RAAAGNRSSVWARAFKAMHKARLEDGRPFGTLLAQGVRNSLNLIFLLGSLVVFFSVVLEM LTLSGVIHMLSGLLRMFLSVLQLPPTLSDALIGGTFEVTLGAKAAGSMGDSTLLVFKTAA AAFILSWGGLSVHAQIVSVLSQTNMRYAPFLTARILHSLLASLLVFVLWKPMRPIGVLLE NTLPAGKFGTDGGTGWLTLFPLAFVVFAGSLFILFSLYLLHSFLKRTV >gi|333607086|gb|AFDH01000043.1| GENE 44 45605 - 45991 331 128 aa, chain + ## HITS:1 COG:BH2854 KEGG:ns NR:ns ## COG: BH2854 COG2346 # Protein_GI_number: 15615417 # Func_class: R General function prediction only # Function: Truncated hemoglobins # Organism: Bacillus halodurans # 9 127 7 125 130 132 54.0 1e-31 MNIDDSTSTLYERMGGEPVLRRLVEAFYPKVQENPLLGPLFPEDIRPVMEKQIQFLTQFF GGPMLYTMEHGHPMMRARHMPFPVTRDRADAWLSCMREAAREIGIPDDLAGILLARLQAP AYHFVNQE >gi|333607086|gb|AFDH01000043.1| GENE 45 46084 - 47199 1134 371 aa, chain - ## HITS:1 COG:lin2277 KEGG:ns NR:ns ## COG: lin2277 COG2199 # Protein_GI_number: 16801341 # Func_class: T Signal transduction mechanisms # Function: FOG: GGDEF domain # Organism: Listeria innocua # 41 355 45 353 357 122 29.0 2e-27 MSEYLVALTIACTLVTLSYLALKIQRMHFFENYEKIASPVLTGLACILLMQQPLSLDTGA VDLRYLPVVMAGLRYGLGNALFSTLLPTLYCFLTAEDSMWVMQTLQSLIIPAVLSSGFHR SEFRTGSKPIPIWAGLKISVLLFLTQVVIYAAVHTGRHALSESYPLLFMSVVSAVSVCLL IGMSNDENAKWLTQRKLEMKASQDLLTGLPNLRSFFEIAGRTLGFRAVSIFMIDIDNFKQ YNDCWGHLHGDQLLRETGRLLKNVVAEHDYIARYGGEEFILMSTETDPVKLREYAEKIRL AVAAYPFEHAETTPVTVSIGISAAADAAADLQLLIDEADRALYISKNTGKNRITLCSESP EPALLEQQNAY >gi|333607086|gb|AFDH01000043.1| GENE 46 47238 - 47477 99 79 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_5489 NR:ns ## KEGG: GYMC10_5489 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 2 77 1 76 76 100 57.0 1e-20 MMLPFSHTWPYETVLKDIYVAECPFCSQSNVLLPLRTKDLLPIHEGKKRLLVFPCCREKV TLVDTDTDYLLADRPFRKR >gi|333607086|gb|AFDH01000043.1| GENE 47 47479 - 47646 241 55 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNISPDTAVKLAKHLGVPLEHLMHMPQHILLQKLAELASSKPDEDPAPDSESETK >gi|333607086|gb|AFDH01000043.1| GENE 48 47884 - 49686 2162 600 aa, chain + ## HITS:1 COG:BH0871 KEGG:ns NR:ns ## COG: BH0871 COG1164 # Protein_GI_number: 15613434 # Func_class: E Amino acid transport and metabolism # Function: Oligoendopeptidase F # Organism: Bacillus halodurans # 7 595 5 588 589 598 51.0 1e-171 MHTPLNQTWDLDVFFPGGSESPQFASFLNDLDGDIAAFRASLEKASSPQTAGDSADFKAL IDQYQGILKRIREADSFVGCLAADNQKDKKAVQLGGKVKTLYADFLASLTRLDPVITGTP DDVWSALLEQEGLREIAFSLNERRAQAKEKLPPEQEALISDLAVDGYHGWNDLYNTTVSQ FRMVVEENGERQELSAGQAFNRLHTPELAKRTELFNQWEEAWAEKADFAAEALNHIAGFR LQVYKQRGWDSVHKEPLEINRMSKQTLDVMWDVITRNKGVLVDYLNRKAQLLGLEKLAWA DVDAPLEGGTKTVGYDEGAKLIVDQFRDFSPRLADYAAEAFENRWIEAEDRAGKRPGGFC TSFPLAKQTRIFMTYSGTLNNLSTLAHELGHGFHQYLMDDMPALAQEYAMNVAETASTFA ELIVSDAAVKAAVSDDERIVLLEDKIQRAVAFFMNIHARFIFETNFYDERRKGLVSADRL SELMVQAQKEAFNDSLSAYHPHFWAAKLHFYATDVPFYNFPYTFGFLFSAGIYARALEEG TAFEDKYAALLRDTGSMTVEELAHKHLGVDLTQPDFWQSAVDTVIEDVNEFMRLTEGKVK >gi|333607086|gb|AFDH01000043.1| GENE 49 49872 - 51188 1051 438 aa, chain - ## HITS:1 COG:CAC0805 KEGG:ns NR:ns ## COG: CAC0805 COG0840 # Protein_GI_number: 15894092 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Methyl-accepting chemotaxis protein # Organism: Clostridium acetobutylicum # 62 437 295 667 668 181 31.0 2e-45 MAAGNMLHFEFTLSIGALSMKNWSSLSFKSKLLAGCYGLIAVYSAALLLLLLLPGSNRLI GFIFLAVMLAASFPFVRWFERALTEPVEDLTRAALNISKGDFSRKVDAATDDALGDLGRS FNSMIDKLRGILGETGAITRQVADTSQSIYSQNLQLKDVLQQVTVSAQELASGAGQISEE VSTISVSTKDIEQKVSNFAGSTKTMNARSEQMLSLVDKGREAVEIQGQGMKRNVEATARV SDTIRTLAEQTAGISKITKAISEIAEQTNLLSLNASIEAARAGEQGRGFAVVAQEVRKLA EEATTQTREVFGLVTAIESGIRQALSHIEVNEEAVGRQTELIRDTEAVFSDIFNAVRFIS DRIGEFAGESDHMLASARQISATMENISAITEQSAAGTEEVSASMNEQISGVLEMVSRCE QMTRSVKQLEQTIQIFKF >gi|333607086|gb|AFDH01000043.1| GENE 50 51479 - 51844 354 121 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_5486 NR:ns ## KEGG: GYMC10_5486 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 119 1 119 134 135 52.0 5e-31 MMIIEPISLVRQVEIVFTELRQELSELNSGTVFLQIRNNAVGKFGVRHNPLEGRDGVVQK SGTGLAESQWQAFRKLALDSLKYKVNWTHGEITFDFTVKKETLYASVMFESNYNMSSLIR G >gi|333607086|gb|AFDH01000043.1| GENE 51 51923 - 52150 297 75 aa, chain - ## HITS:1 COG:no KEGG:PPE_03933 NR:ns ## KEGG: PPE_03933 # Name: not_defined # Def: small, acid-soluble spore protein 1 (SASP) # Organism: P.polymyxa # Pathway: not_defined # 4 75 7 78 78 88 69.0 9e-17 MGAGQSRSSNTLVVPQANQALDQLKYEVAQELGIQIPQDGYYGYMATRDTGAIGGHITRR LVQIAEQQLAGKLGR >gi|333607086|gb|AFDH01000043.1| GENE 52 52440 - 53081 786 213 aa, chain + ## HITS:1 COG:BH0863 KEGG:ns NR:ns ## COG: BH0863 COG3341 # Protein_GI_number: 15613426 # Func_class: R General function prediction only # Function: Predicted double-stranded RNA/RNA-DNA hybrid binding protein # Organism: Bacillus halodurans # 1 213 1 196 196 208 54.0 6e-54 MAEKKFYVVWVGRTPGIYSTWAQCKEQTDAFPQAKYKSYPTEAEARAAFERGWQKSLDFG AKKKSAGAGASGKSEAPPEVDYDSISVDVGCSGNPGIVEYKGVDTKTGEVIFYRGPISKG TNNMGEFLAIVHALAYLQKLGSSKTIYTDSMTALSWLRKKEVASNLVRDASTEEIWTLVD RALQWVRTNTYTNKIVKWDTKKWGEIKADFGRK >gi|333607086|gb|AFDH01000043.1| GENE 53 53289 - 54401 1427 370 aa, chain + ## HITS:1 COG:YPO1517 KEGG:ns NR:ns ## COG: YPO1517 COG1879 # Protein_GI_number: 16121790 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Yersinia pestis # 36 370 26 363 363 208 37.0 1e-53 MKGIRKVVHVFTMMILIVGLVAACGKANTETTTGSAAQTPGASPAGGDKANALAGKKVAL IMRQNLGTFSAQYVEGVKEQVTKLGGTVTVIPADGDLTKMASNLDAAVNQKFDGILLDHG TPDALQNGINKAVEKKIPIVAFDSNVKGPGIVALEQNDQKLAELTLEQLGKDAGGKGNIV KVWVAGFPPMESRQIAYKAFLDKNKDIKEVAAFGNAQNPALDTQAQMEAILKKYPNKGDI TAVWAAWDEFAKGATRAIQQAGRTEIKVYGIDMSDEDLQLIQDANSSWVASAAVDPKDIG RIQVRYLYQKLHGDQTPEKVILEPVFVSRDELPKDKKVTTAELSQYVKGWGNSQQGYTDW LKEAEKQSGK >gi|333607086|gb|AFDH01000043.1| GENE 54 54474 - 55994 1593 506 aa, chain + ## HITS:1 COG:AGl2027 KEGG:ns NR:ns ## COG: AGl2027 COG1129 # Protein_GI_number: 15891132 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, ATPase component # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 3 500 8 503 505 394 43.0 1e-109 MTTTSLSVLRMNGITKTFPGVKALSEVDFEVKGGEIHGLLGANGAGKSTLMKILSGAYTA DGGTIEIDGEAVTISSPKDAMRQGIFCVYQEVDTALVPELTVAENVLLDSVAHGSAWLRW GTLNREAARILASMGSDIPVKLKASQLTIAQKQLVLIARAVAHAAKCVIFDEPTAPLSLE ESEQLFAIMERLKANGVGCVFISHRLAEVTRLCDRITVMRDGSRVLTKAAQGTSHGEIIE TMLGKTFAEEFPKLPADLGGTVLEVRGLRRGTKVRGVDFTLREGEILGIVGLVGAGKTEL SRLLFGADRADGGEVSLRGKRLRLSEPEDAVRAGVVLVPEERRKQGVLVEESVQRNLSLP ILRSLSAGGFIRRREERGHAERLIGQLGVKPTQPERPVKHLSGGNQQKVAVGKWLPTDAS VYMFDEPTKGVDVGAKSDIFRLIGQLAQEGKGVIYLSCEIAEILGIADRILVMSYGRITG ELSREEATAEAILSYASAGEAEHVER >gi|333607086|gb|AFDH01000043.1| GENE 55 55984 - 56970 1190 328 aa, chain + ## HITS:1 COG:YPO1553 KEGG:ns NR:ns ## COG: YPO1553 COG1172 # Protein_GI_number: 16121826 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components # Organism: Yersinia pestis # 2 322 14 329 331 257 47.0 2e-68 MKDKALDVSFRYGTLVVIAAVFVFFSITNPNFLSYDNIFDILRSISIVTFVAIGVTLSQI VDGFDLSVGSTVSITTVVAASLMVWYEQPLIVVLLVPLAIGIGIGLLNAFLIVKVRIPDL LATLTVMYIIAGVHKTYTKGFSVYNNMPMPDGTTAKGVVTESFKWLGQGKIIGLPVPVVL MIIAVAAVHIFLTYTRWGRQLYITGGNREAARLSGIGVNRVRTAAYVLSGLFAAIGGILY AARIGSGQIDAGAPLLMEAVAAVFVGYSVLGAGKPNVIGTFFGAVLIGILLNGLTMLNVP YYSFDIIKGGVLLAALAVTFVHLNRRRQ >gi|333607086|gb|AFDH01000043.1| GENE 56 57061 - 57474 480 137 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKKIIVLTLLFLLTLGASSAFAETEPNDTYTTANVLSQGDNFGKLSGSLDRDWWTDQVPA GSVHKVTLTSPSSYPYLITLYTLSPLGVPVYQSSASGNGSVTLNGGASGTTFFVKVSPAF LNVDTRKNYTLNLSTVN >gi|333607086|gb|AFDH01000043.1| GENE 57 57780 - 57896 159 38 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRELPAFLRQLLHNGWFWVAVAAGAIAGSLGWLLYMRL >gi|333607086|gb|AFDH01000043.1| GENE 58 58078 - 59112 1344 344 aa, chain + ## HITS:1 COG:BS_ydbI KEGG:ns NR:ns ## COG: BS_ydbI COG0628 # Protein_GI_number: 16077515 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Bacillus subtilis # 5 341 6 338 350 293 52.0 3e-79 MFTKQYFQSKGFRRILIFALLALILYAMQSMINLILLTFIFAFLMDRMQSFVSSRLNRYI RVDRRWIVAILYVVILALLGMGMYRYLPVVAVQVSQVVRQLYEFYTQPQDNEVLSYIINL IKPYIEQTELSKYMNQGFGFVFKSVTDIGKVLLHVFIALLLSLFFLLEKPRIIRFTAKFK DSKIAAFYEEVAYFGSRFVHSFGKVLEAQFLIALVNGILSVIALWILGFPQLFGLGLMIF LLGLVPVAGVIVSLIPLCTIAYSIDGIMMVVYVLVLVAVLHALEAYMLNPKLMSAKTNLP VFYTFIVLIFCEHFMGVWGLIIGIPIFMFLLDVLDVTREKETVA >gi|333607086|gb|AFDH01000043.1| GENE 59 59801 - 60829 694 342 aa, chain - ## HITS:1 COG:no KEGG:BcerKBAB4_3910 NR:ns ## KEGG: BcerKBAB4_3910 # Name: not_defined # Def: acetoin transport permease protein # Organism: B.weihenstephanensis # Pathway: not_defined # 1 341 1 353 356 100 27.0 6e-20 MLSKALWKKDYKQAKLLLWLMPAAGFLFLVFSRMNDLIFNPMNIKWKLLFMREHPENATI YGNEFIHYRIALAVLALGAAVLLIGMERRGLHQDFTFSLPFKRTQIYWNKWLLGIIFILG SVLLTNALDIVVILLSPFHDYFTLSVHVREIFRSILILTAWYTIVLFAGTFTGGALTQIL LAIVAGVLPMGLKSMLSSFFSVYWSGYRELLPPVVRSNWHYLNPLVLVTDSWYPPTSLYL FGICAVYILIFLGAGLYAYSKNKPENNGKAILFPRLEPYFLWSVVVCGACFAGLVAKNFT YAYYQYKQNGAYDYAYCFAFLLGGAAVYFILRFLLKRRFKFI >gi|333607086|gb|AFDH01000043.1| GENE 60 60819 - 61709 837 296 aa, chain - ## HITS:1 COG:lin2912 KEGG:ns NR:ns ## COG: lin2912 COG1131 # Protein_GI_number: 16801971 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Listeria innocua # 2 289 1 286 295 207 37.0 3e-53 MLNVEALSKRIDGHPVLEDIRFELGQGSIAALVGRNGAGKTTLLRTLAGILDPDHGEVRW EGRSIHEHPDAKRNIVYVPDSLDMLGGYTAKDCADLYRLAYPDFEPVYFADQLRRFHLPE RKKIRTFSKGMKALMGILLAFSSKASLILLDEPTNGLDSIVRKQVLSFLVEEVAGGSTSV LISSHQLQELERIADTVVMIREGKLESVSSLEETKGALHKLQVVFNGEPPGDFLSLPQVR VASHVGGVYTLLLLQDDSGQTLQHLQHLNPLLVDRLPIQLEDVFEYRLGEGDEHVV >gi|333607086|gb|AFDH01000043.1| GENE 61 61723 - 62100 423 125 aa, chain - ## HITS:1 COG:BS_ytrA KEGG:ns NR:ns ## COG: BS_ytrA COG1725 # Protein_GI_number: 16080098 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus subtilis # 1 124 1 124 130 118 46.0 2e-27 MIKINERSELPIYEQIILGMKELILKGALRQGDRLPSVRELSAAVLVNPNTVSKAYQELE RQGIIETLRGKGTFVAKPSSPGMEKERLEKFRSTFRQLLVEATYLGIGADQIKGWTEQFY KEIKE >gi|333607086|gb|AFDH01000043.1| GENE 62 62352 - 63215 883 287 aa, chain + ## HITS:1 COG:BS_ykuE KEGG:ns NR:ns ## COG: BS_ykuE COG1408 # Protein_GI_number: 16078469 # Func_class: R General function prediction only # Function: Predicted phosphohydrolases # Organism: Bacillus subtilis # 6 284 3 284 287 208 43.0 1e-53 MDPNPKMTRRAFLAKGKFLAGALLAAPFVSYGYARFAEPHWIRTKHVRLELERLPQAFDG VRVVQFSDVHVGPYLAPGDLPQLVDMINALKPDLLCFTGDLYDYRVYDASAVSQALAALK APLGKFAVLGNHDYYGSPGETEKVLKPGGFELLTNRSVAVGKDKALIRVAGVDDMWEGRP DLNRALKGVRRDDFVLLLSHAPDFADIALEAPVDMQLSGHSHGGQVRLPFYGAITTPMYG RKYVDGLYKLGGGKLHVYTNRGIGMTMHPVRFWCRPELTVFTLKKRL >gi|333607086|gb|AFDH01000043.1| GENE 63 63348 - 63515 295 55 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MGYVGGVGGIGGVGGVGGVGYGGGGYGGYGGIGTSVGAILVLFILLVIISRTFLY >gi|333607086|gb|AFDH01000043.1| GENE 64 63687 - 64472 247 261 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 8 248 4 238 242 99 31 5e-20 MYKDLEGKTVVITGASTGIGRAAAVRFGQEKANVLINYLSHEENIPALIAEVEAAGGRAL AIRGDVTKEEDVKKLVETAHEHFDSLDVMINNAGIENEVPSQELSADEWRKVLDVNLTGA FLGSREAISYMLEHEIRGAVINVSSVHEMIPWPHFVHYAASKGGIKMMTETLALEFAPKG IRVNNIGPGAINTPINETKFADEQARAGVEALIPMGYIGKPEEIAAVAAWLASSESSYVT GITLFADGGMTKYPSFQGGRG >gi|333607086|gb|AFDH01000043.1| GENE 65 64492 - 66180 1779 562 aa, chain + ## HITS:1 COG:BH2903 KEGG:ns NR:ns ## COG: BH2903 COG0366 # Protein_GI_number: 15615466 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Bacillus halodurans # 1 560 1 557 561 624 55.0 1e-178 MNQTWWKESVVYQIYPSSFKDSDGDGRGDLRGIISKLDYLAELGVNVIWLCPVYRSPGAD NGYDISDYYEIDPQYGTMEDFDELLLEARKRGLKIMMDLVLNHTSDQHAWFKESRSSRDN PKRDYYIWRKGREGLFPNNWESYFSGSVWEHDPETDEYYMHLYSKHQPDLNWENDEMVDE LFRMVQWWLGKGVDGFRFDAIAHIVKAQGLPDADNPRHLPVVQAYQLFSNLEKVHTLLHK LNDRVLFNYDIMTVGETSGLGPEQALDYVGDERHELNMVFQFEHMNLDAASAGTGKWESK PWTLLELKKVMSRWQTVLHGKGWNANYLGNHDQPRPVSRFGDEGRYRVESAKMLAAFLLT LEGTPYIFQGEEIGMTNVEFDLIGDYRDVETINYYKQAKLLGKPQDEVMKAIWKKSRDNA RTPMQWDDTANAGFTTGEPWIKVNPNYPGVNAAAAAADPQSVYHYYRSLIALRKKHPVIV YGEYKLLLPLDTEIYAYTRTLNGEKLLVILNFFDGTPEFRWPEELGEGKDAELLISNYDP VSVEDTGVLKLRPYEARVYLLG >gi|333607086|gb|AFDH01000043.1| GENE 66 66835 - 68763 1734 642 aa, chain + ## HITS:1 COG:FN0951 KEGG:ns NR:ns ## COG: FN0951 COG1010 # Protein_GI_number: 19704286 # Func_class: H Coenzyme transport and metabolism # Function: Precorrin-3B methylase # Organism: Fusobacterium nucleatum # 3 249 4 244 249 239 46.0 9e-63 MAGKLLIIGFGPGDEAHITKRAREAISESEVIIGYNTYVDLIRSLIDGKQVVRTGMTEEV SRAQEAVRQAEAGRKVAVISSGDAGVYGMAGLVYEVLIEKGWKPSDGVEVEIVPGISAIN SCASLLGAPVMHDACTISLSDHLTPWDLIRRRVEAAASADFVIALYNPRSGRRTRQIVET QQILLKHRSPDTPVGIVKSAYRDREHVVLTTLAEMLEHDIGMLTTVIIGNSATRNYEGLM ITPRGYQRKYTLDSDIQPLRPHERLRREAEPWALEQEAETGAETEAVLPGQPGQPGAALR SAEQREAGSAGLPSFFDEDEYGDDGYGEYSPEAEGTGTADDYDREDSPVRIQAAGTRSAY DTPASSGAVEYGVSAVAVAVRPPAAPAASVEAPAPTAYELAEEALRLVTGEPGGTAPSAS PSGFFRQQAILEFAVSPGLANKNLTAKQLMVLAAAVGDTGTMEYTPHHQLLVKLRTDDPD SVTKRLRGEGLLLAPVGDVVQIKACDFCNMDKGDAVPYAEELHDLLGGAAVPKEMKIGFN GCGMACYGAVKEDIGIVYRREKFDLFLGGKTVGRNAHAAQPVAEGIEPDKLVETIERIVA RYRNEGHPNERFHKFFARVKELEGYRHREVPAFQIENALCGD >gi|333607086|gb|AFDH01000043.1| GENE 67 68826 - 70004 832 392 aa, chain + ## HITS:1 COG:BH1496 KEGG:ns NR:ns ## COG: BH1496 COG2138 # Protein_GI_number: 15614059 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus halodurans # 1 262 1 269 279 215 42.0 1e-55 MDAVLFVGHGSRDAEGNSEVRAFVSRLAETMEQAIIETCFLELEKPTISQGIQTCVNRGA TRIAVVPIILFSAGHAKIHIPGAIDEAKERYPGVQFIYGRPIGVHEGVVDIMTARLGGAD RFREETPGDTAVLVVGRGSSDPDANSELFKISRLLWEKLQVPWVETAFIGVTAPLLENGI ERCLRLGAKKVIVLPYFLFTGILIKRMEGMLLDFSLRYPDCTFEMTDYFGLDPILGGILR DRAGEALQDEVKMNCDMCSFRLEAMKHIDHHHHHDHDHDHHHEHEHHHGHHHEHGHDHGH AHEHEHHHEHDHVHGHAHDHGQHAHSHEHEHTHAHEHAQAHAHEEHAHSHADDRRAASEA GATGGEASHRAAASPSAPGPVAAGADGREGGR >gi|333607086|gb|AFDH01000043.1| GENE 68 70001 - 70780 794 259 aa, chain + ## HITS:1 COG:lin1163 KEGG:ns NR:ns ## COG: lin1163 COG2099 # Protein_GI_number: 16800232 # Func_class: H Coenzyme transport and metabolism # Function: Precorrin-6x reductase # Organism: Listeria innocua # 1 241 1 235 250 146 38.0 3e-35 MILLLAGTSDARELAVLLAQAGHRVLATVVTDSAAKSLTDAGIAAAVGRLDAEALAALIR REEVSLVVDASHPFAEEASRNAMTASKAAAVPYVRYEREGSDLQVRPGIVFADDYAHAAE LAAVRGGVVMLTTGSKTLHIFARRLGGLPDVRLVARMLPRLDNMEKCEELGIEQRNIVAM QGPFSKELNKALYAHYGVTLMITKESGKVGAVDEKLEAALEMGIETIVIGRPGLEYGIHF SDYEGVLKAAADLLQEGSS >gi|333607086|gb|AFDH01000043.1| GENE 69 70780 - 71430 796 216 aa, chain + ## HITS:1 COG:FN0970 KEGG:ns NR:ns ## COG: FN0970 COG2082 # Protein_GI_number: 19704305 # Func_class: H Coenzyme transport and metabolism # Function: Precorrin isomerase # Organism: Fusobacterium nucleatum # 14 215 10 214 219 169 44.0 4e-42 MDFRTEFKPLTVQPQEIEAKSFEMITEELGSHDFTEEQYPVVQRVIHASADFELGRSLVF HPRAIEAGIEAIRAGRTVVADVQMVQVGISKPRIEKFGGKVNVYISDPDVMEEAKRLNTT RAIISVRKAIREAEGGIFAIGNAPTALLELIRLVKEGEARPGLIVGVPVGFVSAAESKEE LLQLDVPFITNIGRKGGSPVAVAAVNALSLMAEKRG >gi|333607086|gb|AFDH01000043.1| GENE 70 71441 - 72577 1177 378 aa, chain + ## HITS:1 COG:PA2908 KEGG:ns NR:ns ## COG: PA2908 COG1903 # Protein_GI_number: 15598104 # Func_class: H Coenzyme transport and metabolism # Function: Cobalamin biosynthesis protein CbiD # Organism: Pseudomonas aeruginosa # 3 369 7 361 366 223 42.0 4e-58 MEEQAAKPLRHGYTTGSCAAATAKAALTALIEQELQSEATIRLPIGEVVTFTMTACSVGE ESASAETIKDGGDDPDATHGARIITEVKWRSEPGIVIDGGIGVGRVTKPGLPVPVGEAAI NPVPRKMIREAVEDVLNVYGSDRGVQVVVSVPDGEEIAKKTLNGRLGIIGGISILGTRGT VVPFSTSAYKASVAQAIRVAVRCGCEHIVLSTGGRSEKFGIDLYPGLSEEAFVEMGDFVG FALKQCRGQGVKKITLVGMMGKFSKLAQGVMMVHSKSAPVDFGFLAELAEAAGADAELIG EVLSANTASQVGDRMQELGLTAFFEEMSSRCCRESLKEMGMEQAARENDGSVTIETFLIS MKAQLLGQAVLYGKGKDK >gi|333607086|gb|AFDH01000043.1| GENE 71 72574 - 73830 1156 418 aa, chain + ## HITS:1 COG:sll0099_1 KEGG:ns NR:ns ## COG: sll0099_1 COG2241 # Protein_GI_number: 16331843 # Func_class: H Coenzyme transport and metabolism # Function: Precorrin-6B methylase 1 # Organism: Synechocystis # 5 205 2 215 230 151 42.0 2e-36 MNKPIKVIGIGDNGADSLLPAYRQWIEESEVLVGGERHLAFFPDYRGEKKVLKGGLSAMT DGLAAEERTVVVLASGDPLFYGIGSLLARKLQVELYPYLSSLQLAFARMGESWQDAHVVS LHGRSIKGLAQRIDGRPKVALLTDEHNTPAAIAAYLLEYGMTEYRAFVAENAGGAAERTG WYELEQLARTECAPLNLVALKRTGPSPVWPLGIPDEQFAQRKPDKGLITKREVRVLSLAQ LALRPDSVVWDIGTCTGSVAIEAGRIAREGAVFAIEKNEGDLANCHENARRFRVDLTAVH GRAPEGLEAFPDPDAIFIGGTGGEMRELLRICASRLKKGGRIVLNAVTIENLSDAMRAFA EEGMRTDIQLVQISRSKPILQLTRFDALNPVYILTAAHPPEENTDTFDIPAEKGDTAT >gi|333607086|gb|AFDH01000043.1| GENE 72 73827 - 74603 926 258 aa, chain + ## HITS:1 COG:slr1879 KEGG:ns NR:ns ## COG: slr1879 COG2243 # Protein_GI_number: 16330281 # Func_class: H Coenzyme transport and metabolism # Function: Precorrin-2 methylase # Organism: Synechocystis # 27 258 4 234 242 159 36.0 4e-39 MSEYAASGTLSGGAGQPANRAESSGTGTLYGLGVGPGDPELLTVKAFRILKQSPVIAYPR KKSGAQSYALKIAETYVDTTAKEMLGLTFPMTKDREALEKSWNKTVDAVWEHLAAGRDVA FLTEGDPMLYSTFIHMMRFLKQRHPEAKTVSVPGISSVNASASRLGIPLADGDERIAIVP ATDDYGAVREAIEEHDCVVFIKVAKVIDLMLQVLGDLGLTDKAAVLTKVTSAEESVWLDV RELQGRQLEYLTLMVVRK >gi|333607086|gb|AFDH01000043.1| GENE 73 74600 - 75376 925 258 aa, chain + ## HITS:1 COG:MJ1578 KEGG:ns NR:ns ## COG: MJ1578 COG2875 # Protein_GI_number: 15669774 # Func_class: H Coenzyme transport and metabolism # Function: Precorrin-4 methylase # Organism: Methanococcus jannaschii # 3 257 6 257 259 268 50.0 7e-72 MSRVVIIGAGPGDPDLITVKGLRLLQEADVVLYTDSLVNDDLIARAKPEAEVLKSAGMEL DEMVALMIKRVEEGKLVARVHTGDPAVYGAIMEQMTLLKKAGVPVEIIPGVSSVFGAAAA LQAELTIPDLTQTLILTRAEGRTPVPEAEQLRELAKHHCTLALYLSATLVKKVVGDLLEA GWSKDTPVAVVQKATWPDELIVRTTVENLEADMRSNGIRSHAMILAGWALDPHIHDKEYR SKLYDKSFTHRYRRGVKP >gi|333607086|gb|AFDH01000043.1| GENE 74 75373 - 76719 1106 448 aa, chain + ## HITS:1 COG:slr0969_1 KEGG:ns NR:ns ## COG: slr0969_1 COG2073 # Protein_GI_number: 16329470 # Func_class: H Coenzyme transport and metabolism # Function: Cobalamin biosynthesis protein CbiG # Organism: Synechocystis # 145 408 79 332 370 124 32.0 3e-28 MISLQEGIVPEIRVRSDYAVIAITKHGVELARNLLRSFGGVDVYYMSKFARGDEDVVSAG SAEGLMSASADGGRAAGSSVAGAEASARADAANAAVSAADIAPAGTAGTTPVDAAAPSTA SSPYGGIQLFEGSVRMLFPALFPAYKGIICIISLGAVVRMIAPLLQDKKKDPGIVVIDDK GEHVISVLSGHLGGANELAREVAAAMGARAVITTASDVQKTIAVDLFGRRFGWEWESADK LTPVSASVVNEEQVAVVIESGEPGWWTLDTPVPPNIRSYGSVQEALEAGPHAALVVTHRL LSSAEQAILSNGVLYRPKVIVLGIGCNRGTPAEEIEEVIASTLAELDFSILSVKTVCTIN LKADEEGLLAVCGKYGWPLVTYTPEELNEMPMNQPSPTVFKYTGAYGVSEPAVQRYIGAS VPLALVKKKSGNVTISVGIQPFTEELPQ >gi|333607086|gb|AFDH01000043.1| GENE 75 76749 - 78329 1370 526 aa, chain + ## HITS:1 COG:BH1898 KEGG:ns NR:ns ## COG: BH1898 COG1797 # Protein_GI_number: 15614461 # Func_class: H Coenzyme transport and metabolism # Function: Cobyrinic acid a,c-diamide synthase # Organism: Bacillus halodurans # 37 519 4 454 465 470 51.0 1e-132 MAAEQEKEPGILSGTAETSAADFVPEAGGLIVSRAKRLVIAGTGSGVGKTTVTIGVMAAL KARGLSVQGFKCGPDYIDPTYHTAVTGRLSRNLDSWMLPADTVREIYCRASRDADIAVIE GVMGFYDGKNPKTNEGSSAEISLLLDCPVILVVNCKSMARSAAAIVKGFQLLDPRVRIAG VFANLVGSEGHYRIVRDAIEQECGVPVIGYILRDENLAMPERHLGLVPSIGRGELSPFFS QLAERISAHTDLERLLQAADTEPLEASARIFRPQEADGSGTAPEASRSPLAGADADADAA PETVRPPEPRVRIAVAKDAAFHFYYPENLELLQAYGAELVYFSPLAGEKLPAGVDGLYLG GGFPEEFAERLAELQEMKQSIAEGIGSGLPTLAECGGYMFLTDAIVDTSGRQYPMLGLVP GKVTMQTKLAALGYREATGTEGNFLLGPGDTARGHEFHYSVFEPAASATLPPAYKTKGMR GSKEEGALNGSLVSGYTHLHFASNPDMPRRWIEKCLLFRKMGDSLV >gi|333607086|gb|AFDH01000043.1| GENE 76 78481 - 79053 576 190 aa, chain + ## HITS:1 COG:BS_yfhC KEGG:ns NR:ns ## COG: BS_yfhC COG0778 # Protein_GI_number: 16077915 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Bacillus subtilis # 10 188 15 192 194 79 29.0 3e-15 MTTAAASILNLLNKRRAVRGYTEHPVEEQDIRTLLQAAVTAPNDRLREPWHFYVIQGEAK ARYEAAAEAFLTERFPTKPHLVEETMKAVKGVPLVIVVTADVIPGDEPSSRDNEYAAACA IYGMWLTAEEMGLGLVWRTRGVGLVHDGRMHEFIGSPENRKVVGTLFIGHPAEPAKPTAR TPYEEKTTWL >gi|333607086|gb|AFDH01000043.1| GENE 77 79489 - 80472 1199 327 aa, chain + ## HITS:1 COG:BH2870 KEGG:ns NR:ns ## COG: BH2870 COG0180 # Protein_GI_number: 15615433 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Tryptophanyl-tRNA synthetase # Organism: Bacillus halodurans # 2 324 3 325 330 411 62.0 1e-115 MKRVLSGIQPSGQLTLGNYIGALRNFVKLQNEHTCYFMIVDLHAITVPQDPAALKEQTES VAALYLACGIDPAKASVFLQSTVKEHAELGWLLTTLTYIGELERMTQFKDKSAGKESVGA GLFTYPSLMAADILLYNADLVPVGEDQKQHLELTRDLAARFNHRYGDTFTIPEPYIPEVG ARIMSLDDASKKMSKSNPNPGSFIAMLDEPSVIRKKLSRAVTDSGREVKFDPKNKPEVSN LMGIYSQCADMTVAEVEARYEGQGYGAFKKDLAEVVVEALEPIQQRYREIRESGELYDVL RKGAAEASELAGETIKQVKERMGFVLL >gi|333607086|gb|AFDH01000043.1| GENE 78 80509 - 80700 255 63 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSRGLALLFAVIGTLLLAGISFAIALREPLLVVLFIVLSIGFMGFGFATKAKMRRKREAS GKQ >gi|333607086|gb|AFDH01000043.1| GENE 79 80829 - 81065 142 78 aa, chain + ## HITS:1 COG:no KEGG:PPE_03933 NR:ns ## KEGG: PPE_03933 # Name: not_defined # Def: small, acid-soluble spore protein 1 (SASP) # Organism: P.polymyxa # Pathway: not_defined # 4 72 7 75 78 82 71.0 5e-15 MGTGQSRSSNVLVVPQANQALEQLKYEVAQELGIQIPQDGYYGYMATRDTGAIGGHITRR LVQIAEQQLAGQGQGQGR >gi|333607086|gb|AFDH01000043.1| GENE 80 80971 - 81186 77 71 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTLARLVDTSLVVWCKSLSNSWQVKVKVKAANLAETVIRSLHMSPRDKSLGLCHVIPAMR TRQNRAGIGAD >gi|333607086|gb|AFDH01000043.1| GENE 81 81219 - 82202 866 327 aa, chain - ## HITS:1 COG:BS_yfhP KEGG:ns NR:ns ## COG: BS_yfhP COG1988 # Protein_GI_number: 16077928 # Func_class: R General function prediction only # Function: Predicted membrane-bound metal-dependent hydrolases # Organism: Bacillus subtilis # 1 326 1 326 327 242 40.0 9e-64 MDTGTHLVIGFGLAGLSMVDPVVASNPSVMTAVFIGTVLGSQAPDFDTLLRFKNNAVYIR NHRGISHSLPFVALWTLLITGVLALIFRGVPVLHVGMWVLIAVAFHVFTDLFNTYGTQAF RPFNQKWISWNIIHIFDPFIFTAHLVAIFLWAVHAAEPTLIFPVLYGLIALYYVWRTLAH YLVEKKLPVQDPAHKAGDKYMAIPTYSLTAWNVVKQGEDGLYTLGDLRKGNLRWIDQVKC DIHPAAEASKSHKDIQAFLYFSGHACAQVIEKPWGYEVRWSDVRYRHRKQYPFVAVLLMD HSYKPLDSYIGWLSDDRLQKRLRVDSY >gi|333607086|gb|AFDH01000043.1| GENE 82 82291 - 82584 189 97 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|304408178|ref|ZP_07389827.1| ## NR: gi|304408178|ref|ZP_07389827.1| conserved hypothetical protein [Paenibacillus curdlanolyticus YK9] conserved hypothetical protein [Paenibacillus curdlanolyticus YK9] # 1 93 1 93 99 77 42.0 3e-13 MSKVFVEYAILPESREVYLSFMREKLRGNEKLSLLEGTDQPNLFVEIWTPVSPDEYTRMR EVRLSGGDPIWGRMHPWIKGGGEKLHIWHFRSIGPDE >gi|333607086|gb|AFDH01000043.1| GENE 83 82719 - 83216 517 165 aa, chain - ## HITS:1 COG:no KEGG:Bcell_4137 NR:ns ## KEGG: Bcell_4137 # Name: not_defined # Def: spore coat protein GerQ # Organism: B.cellulosilyticus # Pathway: not_defined # 46 157 2 124 152 130 62.0 2e-29 MTISSNPGSKSYGTAAPGYTTYPSYPGSAQGGYPSSPGSQFPGTSFPGSQFPGYPSYPGQ FPPPGAGSGGTGVPGGVSQLPLEESFIENILRLNLGKVGTFYMTYENNKEWNAKIFRGVI EAAGRDHIIISDPKTGVRYLLLMVNLDYATFDEPLNYFNTPVQPR >gi|333607086|gb|AFDH01000043.1| GENE 84 83378 - 84073 717 231 aa, chain - ## HITS:1 COG:BS_ycbL KEGG:ns NR:ns ## COG: BS_ycbL COG0745 # Protein_GI_number: 16077324 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Bacillus subtilis # 5 227 1 224 226 174 40.0 1e-43 MSSILIIEDDNSIGDMMSIYLAEDGYTVKRASDGQSGLRLFKEFEPDLIVLDIMLPDSDG MKLCADIRSLSSLPILMVSAKNDVSDRVKALLIGADDYLCKPFSMRELSARIQALLRRSQ IVQAKSAPAVREAPPSIHVDTDKRCLYVNHIPVETTFSEFELIKLLWLHEGKVFSREELL NRIRGIDSFVTERAIDVHIANLRKKIEVDPKDPKYIKTVWGVGYKFALAAE >gi|333607086|gb|AFDH01000043.1| GENE 85 84379 - 85368 1077 329 aa, chain + ## HITS:1 COG:BS_yjdK KEGG:ns NR:ns ## COG: BS_yjdK COG0109 # Protein_GI_number: 16078273 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Polyprenyltransferase (cytochrome oxidase assembly factor) # Organism: Bacillus subtilis # 33 329 28 327 329 326 57.0 4e-89 MDKQLGYKAAPDTVLHADHQAEAESAAQTDVPSEPATWKDYFALTKPGIIFSNLITAFGG FWIASAGNFTIDWFFLMIFTLVGTALVMASGTVLNNYLDRDMDAKMERTKKRATVSGKIK PSVVLGYGIILGIAGIALLFVAVNPLSSLLGLTGLFLYVWVYTAIFKRTSVWSTFAGSFS GAVPPVIGYCAVSGKLDMTALILFLIMFLWQPPHFWALGIRRKEEYRAAGYPLLPVVKGN YVTKVSMMRYIVLLVPVSQLLFFYSGDAHVGPLYFFAATIMGLIWAFMGYKGFKAKDDDK WAKGMFIYSVNYLTLLFLIMVVDSTIMNL >gi|333607086|gb|AFDH01000043.1| GENE 86 85453 - 86085 761 210 aa, chain + ## HITS:1 COG:CC3503 KEGG:ns NR:ns ## COG: CC3503 COG1999 # Protein_GI_number: 16127733 # Func_class: R General function prediction only # Function: Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems # Organism: Caulobacter vibrioides # 32 183 24 167 190 80 37.0 2e-15 MAGGFWAKNWFKVGITVVLLAIIASFAYKLYGQEQASAYLKDKPVGTAAPFELTDTEGKK VSSSDFDNKVKLVYFFFASCPDVCPITTNFLSKVQDEMKAQKVFADKADIVSISFDPARD TPAALKEYAIRNRADFTGWKFLTGTDEQAMAQLAKKYSIGVTKDNTGNFTHSNVILLVDK KGQIRTYYNPGRPDLDYKTMVKDIKTLSKE >gi|333607086|gb|AFDH01000043.1| GENE 87 86093 - 86440 339 115 aa, chain - ## HITS:1 COG:SA0768 KEGG:ns NR:ns ## COG: SA0768 COG1658 # Protein_GI_number: 15926495 # Func_class: L Replication, recombination and repair # Function: Small primase-like proteins (Toprim domain) # Organism: Staphylococcus aureus N315 # 5 103 8 106 128 72 32.0 2e-13 MSIAIIVEGKNDRSRLRRLLSSEVDIYCTYGTPGTEALEQLKKKVGTSEVYVFTDNDSSG KKIRGRLRDLFPDGEQIYTRRGYAGVEGTPEEYLIQQLEKAGLEEYIVYPPAPAL >gi|333607086|gb|AFDH01000043.1| GENE 88 86647 - 86742 192 31 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGAVGGYGGWTSTGTILVLFILLVIVSRTFI >gi|333607086|gb|AFDH01000043.1| GENE 89 86854 - 88134 1205 426 aa, chain - ## HITS:1 COG:BH0237 KEGG:ns NR:ns ## COG: BH0237 COG0477 # Protein_GI_number: 15612800 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus halodurans # 6 414 4 368 387 86 23.0 9e-17 MKTAIWLYFFMFVAFFDLHAQYPILTPFALSLGAAPSFIGLIMGMYSLTHLPGNLLAGYG VDKYGSKLFIVFSLIVAGIVLIFQSQVKDPWQLLMIRSISGFVLAFLSPACLSMLAKIAK DSVHQSKLMAGNGLIHTLASVVSPAAGAYLVAQFGFTASFTLLGWLLIVTGLLSIPWLKE TRPEAAAPPLHTGAGSAGISVSAAMSRKPGSGGTEAAAPSPGSQGTRRKAAQLHAPVADN SGGLAGGADKIPWMFYFVPLAISCSQGILFFELPLMKTAQSSLLTSGLFFSLISLGALVT LSMLFLNRIPPAHRTVSGALALAVLFFGLAVDWPLPLTVTLFMIGMAKGLIFPSLATLLA GITSSNRYGRVFSLLSIAYSIGAFIGPMVAGKLRDSISPYFIAFVILMAALTLLPFRVLR QKPAAV >gi|333607086|gb|AFDH01000043.1| GENE 90 88276 - 88431 226 51 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MDRFIVALLAALGALAVIRFLKTRRSVQQETDREEQIRQELKELRKKREEE >gi|333607086|gb|AFDH01000043.1| GENE 91 88489 - 88911 605 140 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_4871 NR:ns ## KEGG: Pjdr2_4871 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 2 138 13 150 152 83 40.0 4e-15 MDAWIAFFQERWLLILVAVIVLLVVVSLVKTVVKWLLVIAIVGALVVYGANYKETLQSIG NAALTELSSQAVKAVQNEAKDATYTANPDGTYTAATKNVKIEGTPGSSEVSVTFMNQTFK VKAEEAVRAFVEQAKKNAGQ >gi|333607086|gb|AFDH01000043.1| GENE 92 88956 - 90101 1337 381 aa, chain + ## HITS:1 COG:CAC2409 KEGG:ns NR:ns ## COG: CAC2409 COG1305 # Protein_GI_number: 15895675 # Func_class: E Amino acid transport and metabolism # Function: Transglutaminase-like enzymes, putative cysteine proteases # Organism: Clostridium acetobutylicum # 155 377 135 388 397 113 32.0 6e-25 MFTSLFSGDTTINFISVALILIVIVSAIQGIIRGASGSAKHLLHMVCGILITVVAIYLAW QTATLVSDPVRIWLSSLAIQIPAQEMPVWKQTYYTAVTAIRDFELFRFGVLFLLAYLIIR QALYWFVDPVLLRWAQSRWDRENSPSVISAATGGLIGSVTGVWRALLVVAVLFVFVTLFP QAKPAGYIQASSLYQKGAQEVIQPFTGDFLQNQVPVFTRAVEQEFSQILQRKYEVLDANI PNNISAAAQEVTKAGKTDEEKAELLYKWVGSRVEYDWNKVELYEQQRIWKEQTPEDTFAT RKGVCIDYSRLYAVMARSVGLDVKVVTGLGYDGRGGYGPHAWNEVYLADSKKWIPLDSTW FSSGGDWFNPSNFNQTHIREA >gi|333607086|gb|AFDH01000043.1| GENE 93 90250 - 92295 2376 681 aa, chain + ## HITS:1 COG:PM1924 KEGG:ns NR:ns ## COG: PM1924 COG0768 # Protein_GI_number: 15603789 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Pasteurella multocida # 4 657 13 621 644 161 25.0 5e-39 MHNEDLEKPDSSKRTRFSVRINLFFFTTFILFSVLIVRLAILQFVEGDRLAEEENSATNR ETPIPPIRGNIYDSNSYPIAYTIPVQSVFFRIESGQNNKEEVIGLARKLADVFQQYGSKT AKPLTPEEIVELMDVGYDINQQQTKAPSYYSIPRRLKADLTKEEVSYLLEHRDEFKWIEV MEESIRTYDQDKIAVQLTGYMRQFSTARESKYGLSFYKNKENTAEYLDTEDVGYDGLELM YQEELRGKNGYKKYPVNSSQKIIGPVSITKPEKGNNLYLTIHKDIQNRTEQKIMDHLAYL RQPKSSSYGYSPNARSGYAVAMEVDTGRVVAMASMPDYDPNLWTGGIKTTEYKKIQPFVN NGTITTAYPDYPENELKKHANSIVYMGSTIKPMTVLVGLKEGFFGVNDYYNDRGSYSFGK KGSQSTIWNSGRKAFGPINAADALKHSSNTFMSALIGERLYFDREDGLKVWDDYLKRFGL VVSTESGLPNEYAGSNESLANAKLDSKQSALVYASWGQNEKSTTLQLAQHTAMLASRGKR MKPLFVDRITTYEGETIKKFDPVVLSEETSFKPQYWDTIFKGMKEVSKQGFDGVNYTVAA KTGTSTQQIGSKEVDNAVFIAFAPADKPKLAVAVVVPEGGYGSYGAAPIAREMFDAYDEY IGLNGTPRGPANGKTDDTAKH >gi|333607086|gb|AFDH01000043.1| GENE 94 92764 - 94638 2050 624 aa, chain + ## HITS:1 COG:BS_asnB KEGG:ns NR:ns ## COG: BS_asnB COG0367 # Protein_GI_number: 16080106 # Func_class: E Amino acid transport and metabolism # Function: Asparagine synthase (glutamine-hydrolyzing) # Organism: Bacillus subtilis # 1 615 1 615 632 568 45.0 1e-162 MCGITGIMYFEDREPSVSMLQQMTDVIHHRGPNDSGFWTENRIGLGFRRLSIIDIAEGHQ PLCNEDESVWIIFNGEIYNYKSLRSMLQDRGHVFRTNSDTEVIVHLYEEFGEECVKHLRG MFGFAIWDRRKKQLFAARDHFGIKPFYYQYNDRQLLFGSEIKSLVASGSVSPSIRTESLM NYLTFQYVPEPNTMFEGIQKLPPAHYIKASFDGEMSIHRYWDPMFDPVDRPFGEYVEQIR ETLKDSVVHHMVSDVERGCFLSSGIDSTAIAAHMRQIEPIRTFSVGFEGPNNETLIAAET AKALGTEHYSKIITREDFFNTLPKAVWHQDEPVADPSAIALYHVAQLAREHVTVTLSGEG ADELFGGYRIYREPLSLAPLESLPLSVRRMLHRLVKMLPAGMKGRNYLLRGTTPLEERFL GNAKIFTEDMKAEVLRVDSEMFKRYQNPFQIAAQYYDKTKHQDPVTRMQYIDMNLWMPGD ILMKADKMTMAHSLELRVPLLDKELFEVARRIPTKYRIAEGTTKHIFRKAMEGIVPDFIL NRPKLGFPVPLRDWLKGPTGSTMVEQIKASGIEDYVKIDAVERMAKLHQDGQGDYARRLW TIYMFALWHATYMEETTKKTVAAF >gi|333607086|gb|AFDH01000043.1| GENE 95 94738 - 95490 1034 250 aa, chain + ## HITS:1 COG:BH0497 KEGG:ns NR:ns ## COG: BH0497 COG0561 # Protein_GI_number: 15613060 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Bacillus halodurans # 4 245 5 245 247 223 50.0 2e-58 MSQYKLVALDMDGTLLNEEKQVSPANREAIYAALEAGVTVIFSTGRGVQSALPYAEELKL ETPIVSVNGSEVWKAPHDLLKRTLLDLDLVKRMYDLAIEHDTWYWAYSVEGMYNRDNWAE DITKPEWLKFGFYTENKESLEIIRGELARWGELEITNSHPDNLELNPKGISKASGIEEVC KLLGIEMSQVIAMGDSENDIAMIRAAGLGVAMGNAQDGVKRIADLVTVTNDEDGVAKIIQ EYVLDPLSAR >gi|333607086|gb|AFDH01000043.1| GENE 96 95532 - 96008 614 158 aa, chain + ## HITS:1 COG:BS_yqgC KEGG:ns NR:ns ## COG: BS_yqgC COG2839 # Protein_GI_number: 16079558 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 155 1 156 160 114 48.0 6e-26 MAILGWILIILLFAVGMLGAIFPILPGALAIFGAFFVYGFFFSFEPFGFWFWLIQSAVVI AITIADYLVSAFGVKKFGGSKASVWGSTIGLLAGPFVIPAFGLILGPFIGAVLGELIHGS NLKHSAQVGVGSVLGFFSSVVVKVVLQLLMIILFIIWI >gi|333607086|gb|AFDH01000043.1| GENE 97 96094 - 96816 872 240 aa, chain + ## HITS:1 COG:BH1247 KEGG:ns NR:ns ## COG: BH1247 COG4813 # Protein_GI_number: 15613810 # Func_class: G Carbohydrate transport and metabolism # Function: Trehalose utilization protein # Organism: Bacillus halodurans # 2 240 1 240 240 348 69.0 6e-96 MIKVTVWNENVHEKTNAKVAEVYPEGIHGAIAAGIAGDSFQIRTATQDQPEHGLTQEVLD DTDVLIWWGHKAHGEVADEIVNRVHQRVLDGMGLVVLHSGHFSKIFKKLMGTSCDLKWRE AGEKERLWVVDPSHPIAEGIGQYFELEQEEMYGEHFDIPAPDELVFVSWFEGGEVFRSGC TYHRGQGRIFYFRPGHETYPTYYNENVLKVITNGVKWAAPVRTAKPVYGNAQPLEKLQAK >gi|333607086|gb|AFDH01000043.1| GENE 98 96892 - 98553 1907 553 aa, chain + ## HITS:1 COG:BH3277 KEGG:ns NR:ns ## COG: BH3277 COG2244 # Protein_GI_number: 15615839 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Bacillus halodurans # 1 502 1 490 539 181 27.0 3e-45 MSKDSLVKGTLILTVAALIARFLGVFQRFPLVYMLGNEGMASYAIAFNLYSNLLVIATAG IPSALSKMISERTALGRMDEANRIYKAALIFAVGAGVVMCAILFLLAPHYAVSSGDPHAT LATLAIAPALLFFPLIAIMRGYFQGRQRMMPNGISQVIEQIVRLITAVGLAYLLLGVSLD WAVAGASFGGVTGGIAALAVMLYYALKLRKEDRGTLPVSEPGYTETGQSRPSGGKLRYGQ IYGQLLRLSIPIVIFSITVTLIYNIDSSTIIPLLRDQIGEAKAKDIVGILGGQAQSLAGL PIVLAIALSQSVVPIISGAYSRRDLELVRNQSSRVMQLAILSGLPMVLAICTAARPLSGM FDYGGTPTGYEYGPPMIAMMTAGAMFQIIMQTSGAVLMGMGKMRALVSSVVFGIAVKLLG NLILSPWLGIYGILASTMLCFIVMSAFNLAVMRNVVTFRIMAPRRWTGLIVTTAVVAVIG VLAERLLFEHLHLFPWRVVNATVNAVLIGALACVLYVILLFVTKVVTKDDIKTFPAPLQK LYAKAGRVLGRRG >gi|333607086|gb|AFDH01000043.1| GENE 99 98708 - 100015 1026 435 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_3738 NR:ns ## KEGG: Pjdr2_3738 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 22 433 24 425 430 389 51.0 1e-106 MNGNGVKENNPLKAIGHWLAGVPHTITQLASGKLASLQSAFHLGQSAQKLVPGKDSVRRL RRTWKDLAVLPVSPPAPEFSLSAQERRLVERIRLDTQRKNRNNVTRTRAYWNLYEQHPEL HWALLAHMVSRNGGWNMTDLEGEFLPPLLKRPAREALFAFLERANALIFGDAYPQLLLYE ESKRTGEPLFHLLPAFGVSVFMRPVWEEFWAVHDPVLLTVSLIVNEQHFIESRVVKQQYF ITHVMETAEFQAQALLQLNQVFFPFALHKDPMHKSADRLNLAGEILEDFTDIKERIGFGK TLYAILFGIPAVHQGVVLFASAQPHTGSRADYWPHLFSRIRKDAPGVGAAGPKLEGCELK AGAAGIYSPELERTWKDVSLTAPEPGDWFPAYAGSVTGYFGDIDVPPLFEMSAECCFGLH KIQLAALASTQLKGD >gi|333607086|gb|AFDH01000043.1| GENE 100 100237 - 101811 1849 524 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_6164 NR:ns ## KEGG: GYMC10_6164 # Name: not_defined # Def: copper amine oxidase domain protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 15 508 13 488 503 278 34.0 4e-73 MKVNNWKKVVCGGTGALMIVLTGCESVGGLDVNKALVNQYAVKSAESQESLKFELLTGDL AGLPPEAQKLVGLFKEVTIKFTEEKIQDPRNASMKGEFTYGKGSIPFELSLQNEDIIIRI EGVSKPIYIRNAQTGQLNGGLLVPGQKSIQELQKVLEDKLPTLASFFIGHAPNPKTIGVT SVSEKVNNETVSLQKLHAEIKGSEALGLVKTFLQNIAADEKGLKEFLGTVFDVFGPIAKE AAAQAGEENKLLDAYLSNKTLAVETMYTAVQTGLKDVLASYDETTDKLVNGPGNEPIRDI LSDRSSVNVDLYVDSSQQIRKSSAGITIPLPEAESGLKGIKLSVTGERWNINQPVTINPV KAEGDRFVFDAADPESVPSLGSFLKSVDKNSSIYKLLKEDLQITKRSFTLPLDDEDMSLF GFGGYRKGDVSMAPVTHVANMLDAKVKWDGETKQITVTDDLGGHTIVFTLGSAEALVDGK PVTLEQAVELHGDYTSVPLRFLAEALGGEAKWDSKQDAVIITRQ >gi|333607086|gb|AFDH01000043.1| GENE 101 101952 - 102434 301 160 aa, chain + ## HITS:1 COG:alr3535 KEGG:ns NR:ns ## COG: alr3535 COG0454 # Protein_GI_number: 17231027 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Nostoc sp. PCC 7120 # 1 156 1 153 156 124 41.0 1e-28 MEIRKFQVSDIRPIVSLFYETVHSVNKKDYTQEQLHAWASQEEEELRLESWKDSMSRNIT YVALIDGKIVGFSDMTVNGYVDRLYVDKDFQGQGVASALLNVLEYEAKNRGLAELEADAS ITAKPFFEHHGFRLVREQSVERRGIKLVNFKMKKELSRDV >gi|333607086|gb|AFDH01000043.1| GENE 102 102550 - 102747 76 65 aa, chain - ## HITS:1 COG:no KEGG:Dhaf_0785 NR:ns ## KEGG: Dhaf_0785 # Name: not_defined # Def: hypothetical protein # Organism: D.hafniense_DCB-2 # Pathway: not_defined # 4 65 5 66 77 73 59.0 2e-12 MVVKKNFPLRLDPKLHQALERWAADEFRSVNGHIEFLLREALVRAGRMPGHAPAPPPDGE LENEN >gi|333607086|gb|AFDH01000043.1| GENE 103 102756 - 103598 1042 280 aa, chain - ## HITS:1 COG:Cgl2775 KEGG:ns NR:ns ## COG: Cgl2775 COG0330 # Protein_GI_number: 19554025 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Membrane protease subunits, stomatin/prohibitin homologs # Organism: Corynebacterium glutamicum # 1 280 26 324 325 243 45.0 4e-64 MTERHVWKINGFVGLLAMVAFIGAGIFCLTAELIIPAVLLFVLAGVVLSSFTVVQPNQGM VVNFFGRYSGTVRDSGFWVTIPFSERKKISLRVRNFNSARLKVNDVDGNPIEIAAVVVFR VVDTAKAKFEVDNYQAFVEIQSETALRHVASKYPYDSYAGEAYSLRANSEEVAKELTLEL QSRLSVAGVEVLESRLTHLAYSTEIASAMLQRQQASAIISAREKIVEGAVSMVQMAIARL QAEGVVELDEERKAAMINNLLVAVVSDRSAQPVINSSSIY >gi|333607086|gb|AFDH01000043.1| GENE 104 103817 - 104161 496 114 aa, chain + ## HITS:1 COG:BS_ytpP KEGG:ns NR:ns ## COG: BS_ytpP COG0526 # Protein_GI_number: 16080036 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Bacillus subtilis # 1 102 1 100 107 94 48.0 5e-20 MEKVHKEQDFRAAVEKSEVTVAVFKATWCKDCHYIEPFMPDLEKAYAGRISFIELDRDEV PDLCEELNILGIPSFIAFSGGQELIRFVSKLRKTREEIEQFLDRAIEVGNALAK >gi|333607086|gb|AFDH01000043.1| GENE 105 104458 - 105489 1290 343 aa, chain + ## HITS:1 COG:BH2617 KEGG:ns NR:ns ## COG: BH2617 COG1612 # Protein_GI_number: 15615180 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Uncharacterized protein required for cytochrome oxidase assembly # Organism: Bacillus halodurans # 1 309 1 292 298 172 34.0 1e-42 MYKLTKRLSFLTMIGMFLIVIMGALVTKTDSGLGCGNEWPLCNGKFVPAYTISSVIEYSH RAVTGLVGLLLLATFILVFKTVSRKDAKYFVAGAGFFTVLQAIMGALAVVFSQSSAVMAL HFGLSLLAFAMTLLLWLTFTKWGNYAVSVARTADGRTPALPKDAAPIGRGFRAFVWFVGV YCYIVVYVGAFVRHTESSGGCIGWPLCNGQVVPELTGATGIVFVHRIAAVIMFIFGLALF LIARKKYSHLENVYKGAGWVLGFLIAQIFSGATVTWSLGHDTAFLFTGMIHAVLICALFG WISYLCVVMLNARVPLGAEQPRSKQESPKQAKAPVNRKEAVTE >gi|333607086|gb|AFDH01000043.1| GENE 106 105907 - 106728 570 273 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_4856 NR:ns ## KEGG: Pjdr2_4856 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 1 233 1 230 235 182 42.0 2e-44 MLRTIFNETKRGERSDERLEQAFTSIKRYLNVLQQSRHSSPSYSPKKLHRLYVWSQGFLD ALDELEESKYCAGRFAERVKKSYLDEMQPEELDDYRRYVYFYKNALIRLFSVLDKLGYFL NDLFDLKTETLKTHFSFFTVLRKMRESGVHPALQQKLYELKTEAKQPLQVLRNQRNMEIH YVNVEMLDDLMVSHSYLGDRIQVENIADNLAQMDRGYEMVCITMDLVFQYISRGSIGENG EENHGGGTQNGSHHGQRERARQNGGANAGQSRV >gi|333607086|gb|AFDH01000043.1| GENE 107 106637 - 107425 903 262 aa, chain + ## HITS:1 COG:BS_ytkK KEGG:ns NR:ns ## COG: BS_ytkK COG1028 # Protein_GI_number: 16079994 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Bacillus subtilis # 6 252 2 249 255 227 47.0 1e-59 MAEVRRTALITGSAKGLGKMAALTLANQGYDIVINYVHSEEEAHDLVRHIQNTGVRAAAI QGDVSRGEDIERIAETVGETMGGVDVLVNNAGPFIRERRLFADYTRDEIDYLINGNLLGV IRLDHALLPHMRRKRWGRIIHFGFGHAAEARAWPHRAVYAAAKVGLVSFTKTLAEEEAAH GITVNMICPGDIRGANKEKRIEEVENCTDDETPRGRPGTGEDVARVLSFLCDPKSDFLTG NIMEVNGGLDPIQTLPMLKQGR >gi|333607086|gb|AFDH01000043.1| GENE 108 107490 - 107738 300 82 aa, chain - ## HITS:1 COG:SA0797 KEGG:ns NR:ns ## COG: SA0797 COG0694 # Protein_GI_number: 15926525 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Thioredoxin-like proteins and domains # Organism: Staphylococcus aureus N315 # 5 82 3 80 80 111 74.0 3e-25 MTENTQSATMYDEVLEVLDKLRPFLQRDGGDVELVDVEDGIVKLKLMGACGSCPSSTITL KAGIERALVEEVEGVVEVVQVF >gi|333607086|gb|AFDH01000043.1| GENE 109 107945 - 108187 72 80 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNENHDCFHCYGDGETECQSCSGEGSRGDRGICTSCGGSGKTACARCSGSGVVADAFDVQ DSITDIMRSLYFRPEYTRGR >gi|333607086|gb|AFDH01000043.1| GENE 110 108276 - 108530 264 84 aa, chain + ## HITS:1 COG:BH3414 KEGG:ns NR:ns ## COG: BH3414 COG4844 # Protein_GI_number: 15615976 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 1 74 1 74 78 79 51.0 2e-15 MRPIIEFCASNMHHGTDAVMKKLEDNPDYDVIEYGCLGNCGECYLFPFAMVNGETVAAET ADKLFDEISKKIKEVEEMYDLFGD >gi|333607086|gb|AFDH01000043.1| GENE 111 108585 - 109649 1318 354 aa, chain - ## HITS:1 COG:BH3415_2 KEGG:ns NR:ns ## COG: BH3415_2 COG1252 # Protein_GI_number: 15615977 # Func_class: C Energy production and conversion # Function: NADH dehydrogenase, FAD-containing subunit # Organism: Bacillus halodurans # 16 354 2 341 341 393 54.0 1e-109 MNKFVILGGGYGGITIATELLEKEIPDNWTVTMVDRSPFQGLKTEYYALAAGTAAETELR VAYPNDPRLSLKYGEVTEVNLETKQVIFADKEPLDYDYLVIGLGCVDNFHGIPGAQEFSN GIQTFSQTRITYQRVNDVVPYGQVTIVGGGLSGVEMAAELRESRQDINIRILDRGASILS SFPTKAKEFVRDWMLDHDIEMRSHVSLKRLEGGDLYNEEEIIRTDATIWTAGIKPSPIVE QLAVDKDPSGRVLLNEYHQIPSHPNVFVVGDCASLPFSPSAQAAESQGKQIVEVMQALWK NETPKLGQIKLKGVLGSLGKKTGFGLMGKKTVMTGMVPRVLKNGVLWMSKHHWG >gi|333607086|gb|AFDH01000043.1| GENE 112 109730 - 110833 986 367 aa, chain - ## HITS:1 COG:BH3411 KEGG:ns NR:ns ## COG: BH3411 COG1060 # Protein_GI_number: 15615973 # Func_class: H Coenzyme transport and metabolism; R General function prediction only # Function: Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes # Organism: Bacillus halodurans # 9 366 7 364 364 462 58.0 1e-130 MNVIIDSPDRRMAEIAEKVENGERLSREDGLFLYQSDDLLTIGQLANKVNLRKNGKNVYF VQNMSLYFTNVCEEHCAFCHFRRDEGEAGSYTLTPSEMLTYISENFHPDIREFHISQGHN PHVPFQYYVDALRTLKQHYPQVSIKAHTAAEIDFFARISGLSYKEVLRTLMDVGLDTLPG GGAEILTERYRKKMRVEKADTNQWLDVHRSAHELGMKTHATMLYGSIETLEERIEHMALL RDLQDETDGFLVFIPNSIQPASASAGIRRRVPAVDELKTIAISRLMLDNFPHIKAYFINM GIKVTQLAFQFGASDAHGTIVKERISHAAGAQSPDGVTKEDLVWLIKGAGRVPVERDTFY NVVQTYN >gi|333607086|gb|AFDH01000043.1| GENE 113 111206 - 111383 159 59 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MQQSEEWECRQKLDVRIEQLRSQMVENGMKYGFLHPSVQHDSRRLDKLILRYYQLERGE Prediction of potential genes in microbial genomes Time: Sun Jul 17 08:41:35 2011 Seq name: gi|333607043|gb|AFDH01000044.1| Paenibacillus sp. HGF7 contig00021, whole genome shotgun sequence Length of sequence - 46481 bp Number of predicted genes - 44, with homology - 37 Number of transcription units - 19, operones - 9 average op.length - 3.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 129 - 159 1.0 1 1 Tu 1 . - CDS 184 - 2439 1810 ## COG0178 Excinuclease ATPase subunit - Prom 2474 - 2533 4.7 - Term 2737 - 2783 11.1 2 2 Op 1 5/0.000 - CDS 2867 - 3286 358 ## COG3832 Uncharacterized conserved protein 3 2 Op 2 . - CDS 3283 - 3612 170 ## COG0640 Predicted transcriptional regulators - Prom 3666 - 3725 6.3 - Term 3748 - 3776 2.1 4 3 Tu 1 . - CDS 3799 - 4140 206 ## COG1733 Predicted transcriptional regulators - Prom 4203 - 4262 7.6 + Prom 4075 - 4134 6.6 5 4 Tu 1 . + CDS 4246 - 4395 162 ## + Term 4451 - 4483 1.0 6 5 Tu 1 . - CDS 4499 - 6178 322 ## COG0008 Glutamyl- and glutaminyl-tRNA synthetases - Prom 6205 - 6264 4.7 - Term 6604 - 6653 3.5 7 6 Tu 1 . - CDS 6661 - 9801 2015 ## Phep_2838 lyase catalytic - Prom 9838 - 9897 2.4 - Term 9845 - 9905 3.5 8 7 Op 1 14/0.000 - CDS 9947 - 11482 1399 ## COG1653 ABC-type sugar transport system, periplasmic component 9 7 Op 2 38/0.000 - CDS 11529 - 12371 908 ## COG0395 ABC-type sugar transport system, permease component 10 7 Op 3 . - CDS 12396 - 13361 839 ## COG1175 ABC-type sugar transport systems, permease components 11 8 Op 1 . - CDS 13512 - 15017 982 ## Bache_1618 hypothetical protein 12 8 Op 2 . - CDS 15072 - 16214 747 ## GYMC10_0964 glycosyl hydrolase family 88 13 8 Op 3 . - CDS 16232 - 17704 661 ## COG3119 Arylsulfatase A and related enzymes - Prom 17855 - 17914 5.3 + Prom 17808 - 17867 6.1 14 9 Tu 1 . + CDS 17899 - 19104 332 ## PROTEIN SUPPORTED gi|163762640|ref|ZP_02169704.1| ribosomal protein L33 + Term 19115 - 19159 5.1 - Term 19098 - 19151 9.6 15 10 Tu 1 . - CDS 19155 - 20588 508 ## COG3119 Arylsulfatase A and related enzymes - Prom 20647 - 20706 5.7 - Term 20907 - 20952 0.7 16 11 Op 1 . - CDS 21002 - 21394 91 ## Amet_1370 triple helix repeat-containing collagen 17 11 Op 2 . - CDS 21421 - 21561 87 ## - Term 22250 - 22308 15.2 18 12 Op 1 . - CDS 22330 - 23301 677 ## COG0673 Predicted dehydrogenases and related proteins 19 12 Op 2 . - CDS 23320 - 24150 472 ## COG3623 Putative L-xylulose-5-phosphate 3-epimerase 20 12 Op 3 14/0.000 - CDS 24230 - 25609 1206 ## COG1653 ABC-type sugar transport system, periplasmic component 21 12 Op 4 38/0.000 - CDS 25680 - 26549 739 ## COG0395 ABC-type sugar transport system, permease component 22 12 Op 5 . - CDS 26623 - 27579 775 ## COG1175 ABC-type sugar transport systems, permease components - Term 28013 - 28048 4.0 23 13 Tu 1 . - CDS 28166 - 29551 689 ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 - Prom 29596 - 29655 7.4 + Prom 29558 - 29617 7.6 24 14 Tu 1 . + CDS 29751 - 30326 292 ## COG1309 Transcriptional regulator + Term 30432 - 30466 1.2 25 15 Op 1 . - CDS 30405 - 30485 73 ## 26 15 Op 2 . - CDS 30502 - 31365 153 ## GYMC10_3529 hypothetical protein - Prom 31424 - 31483 3.7 - Term 31454 - 31490 2.3 27 16 Op 1 . - CDS 31531 - 32991 757 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 28 16 Op 2 45/0.000 - CDS 33006 - 33803 789 ## COG0842 ABC-type multidrug transport system, permease component 29 16 Op 3 . - CDS 33775 - 34767 412 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 30 16 Op 4 . - CDS 34748 - 35761 453 ## 31 16 Op 5 . - CDS 35758 - 36984 724 ## gi|238062953|ref|ZP_04607662.1| hypothetical protein MCAG_03919 32 16 Op 6 . - CDS 36981 - 37412 391 ## COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases 33 16 Op 7 . - CDS 37494 - 37739 162 ## 34 16 Op 8 . - CDS 37723 - 39195 833 ## COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 35 16 Op 9 . - CDS 39192 - 39890 519 ## Kfla_6069 hypothetical protein 36 16 Op 10 . - CDS 39887 - 41125 625 ## COG0304 3-oxoacyl-(acyl-carrier-protein) synthase 37 16 Op 11 . - CDS 41118 - 41381 303 ## 38 16 Op 12 . - CDS 41394 - 41828 100 ## 39 16 Op 13 . - CDS 41888 - 42859 349 ## COG0463 Glycosyltransferases involved in cell wall biogenesis - Prom 42950 - 43009 11.0 + Prom 43086 - 43145 8.8 40 17 Tu 1 . + CDS 43171 - 43719 149 ## BL05382 hypothetical protein 41 18 Op 1 . - CDS 44096 - 44572 57 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 42 18 Op 2 1/0.333 - CDS 44638 - 45165 270 ## COG3153 Predicted acetyltransferase - Prom 45195 - 45254 2.9 - Term 45356 - 45388 5.0 43 19 Op 1 . - CDS 45402 - 45899 323 ## COG1846 Transcriptional regulators 44 19 Op 2 . - CDS 45953 - 46276 109 ## AMED_3346 hypothetical protein Predicted protein(s) >gi|333607043|gb|AFDH01000044.1| GENE 1 184 - 2439 1810 751 aa, chain - ## HITS:1 COG:lin2156 KEGG:ns NR:ns ## COG: lin2156 COG0178 # Protein_GI_number: 16801222 # Func_class: L Replication, recombination and repair # Function: Excinuclease ATPase subunit # Organism: Listeria innocua # 6 750 3 746 746 962 62.0 0 MSESNQEYIVISAARENNLKNVSLRIPKRKITIFTGVSGSGKSSIVFDTIAAESTRLLNE NFSMFVRTFLPRYPQPDADAIENLSMAVIVDQKRLGGGSHSTMGTITDISPILRLLFSRA GQPYVGQANMFSFNDPQGMCPECNGIGRSLCVNMSKALDKSKSLHEGAILLPGYSVDSMD WTIIIQSGPFDPDKKLSDYSEEELEQLLYGKARKVATLFGGKTINITVEGVIEKFTNKYI KQDVKTKSERTQKTVAPYISEGPCSSCHGARLSQAALSCKVNGLNIAEMSSMEVGRLIRV IREIDDAVAAPIVKSLTERLQHLVDIGLDYLTLDRETDTLSGGESQRVKMVKHLSGSLVD VTYIFDEPSIGLHPRDVHRLNELLQKLRDKGNTVIVVEHDPDVIKVADHIVDVGPYAGSR GGAIVYEGSFQGLLEAETLTGTHMKRQLQTKHDCRQPSGKLSIKDATLHNLRNVSVDIPT GVLTVVTGVAGSGKSTLINEIFLGQHPDAIVIDQSAVGVSTRSNPATYTGIMDDVRKAFA AANKVNQGLFSFNSKGACENCQGLGVVYTDLAFLDSVKLPCEVCGGRRFKEEVLAYKLNR KSIAEVLEMTVEQALDFFQLKEVVRKLQAMSDVGLNYITLGQPLSTLSGGECQRIKLASE LHKKGSIYVMDEPTTGLHMSDIGHLLEIMNRLVDAGNTVIVIEHNLDVISQADWIIDMGP DGGSKGGQVVFEGTPPQIIHAEQSITGRYLM >gi|333607043|gb|AFDH01000044.1| GENE 2 2867 - 3286 358 139 aa, chain - ## HITS:1 COG:BH2087 KEGG:ns NR:ns ## COG: BH2087 COG3832 # Protein_GI_number: 15614650 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus halodurans # 1 70 1 70 76 117 81.0 7e-27 MSLTLSLDFQYKTSIEKLWSALTDSSKLARWVADIHTGQAMENDFKPVVGHRFQFRAQPT EWWNGIIEGEVLVVDVPNRLSYTWASGEKHTVTWTLKDLGDGKVNLHLEQTGISNDQALN GAKYGWTKWCGNLEKLLEQ >gi|333607043|gb|AFDH01000044.1| GENE 3 3283 - 3612 170 109 aa, chain - ## HITS:1 COG:BH2086 KEGG:ns NR:ns ## COG: BH2086 COG0640 # Protein_GI_number: 15614649 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus halodurans # 1 97 1 97 109 154 84.0 4e-38 MSEDHQLRDVFDAIADPTRRRLIHLLAEAEEIPLHELTAQFQMGRTAVSKHLTILKEAGL VLDRKVGRETRFRLNASPLREIQDWVAFYSKFWSTNLLRLNQLLEEEEE >gi|333607043|gb|AFDH01000044.1| GENE 4 3799 - 4140 206 113 aa, chain - ## HITS:1 COG:BH0655 KEGG:ns NR:ns ## COG: BH0655 COG1733 # Protein_GI_number: 15613218 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus halodurans # 1 113 1 113 113 193 85.0 5e-50 MSMAEYKGKVKHIQDTPFGYTMSVISGKWKMVILYLLAENQPVRFNDLKRQIGAITYKTL SSQLKELEADGLVKRKEYPQVPPKVEYSLTNKAESLLPILEDLCEWGVKNQHS >gi|333607043|gb|AFDH01000044.1| GENE 5 4246 - 4395 162 49 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTTATTYNHGVAWEEAFGVSQGYSSLMSVLNIWVYEPSAAGFSYAPAQP >gi|333607043|gb|AFDH01000044.1| GENE 6 4499 - 6178 322 559 aa, chain - ## HITS:1 COG:PA1794 KEGG:ns NR:ns ## COG: PA1794 COG0008 # Protein_GI_number: 15596991 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glutamyl- and glutaminyl-tRNA synthetases # Organism: Pseudomonas aeruginosa # 11 558 11 555 556 574 51.0 1e-163 MVNEKEHLTENFIFRLIKEELEHNPFDSKMCTRFPPEPNGYLHIGSAYAIHTNYSVAQKF NGTFHLRFDDTNPLKEDIEYVNAIIEDIKWLGYDPGTHIYFGSDYSNEIYNAAVKLIKQG KAYVCDLTPNEVTKYRGTLTEPGVDSPNRNRSVEENLELFEKMKNGDFPVASKVVRAKID MASPNLNMRDPIIYRIIYAEHYRTGSDWCIYPMYDFAHPIQDALEGITYSLCSIEFKDHR PLYEWVLKELGYHEPPRQREFGRLNITGVVTSKRFLRPMVEGGYVDGWDDPRLPTIQGLR RRGFTSESIRNFIELIGNIRTESTVDISLLDHCLRQDLKEKTVSVMAVLNPLKVVITNYP PDEVELLTIENNSENESLGKREVPFSNIIYIERDDFMEQPLKGFHRLSPNAEVRLKGAYF IQCEEVIKDRETGEISELHCTYDPLTKSGTGFTGRKVKGTIHWVSADHAVKADVNLYDKL LLDQDNSKEDSGGWTERINPASLVSIKDVLMEPFVKYASPEQKFQFFRHGYFCADTKYST KDRLVFNRIVSLKDSWSKR >gi|333607043|gb|AFDH01000044.1| GENE 7 6661 - 9801 2015 1046 aa, chain - ## HITS:1 COG:no KEGG:Phep_2838 NR:ns ## KEGG: Phep_2838 # Name: not_defined # Def: lyase catalytic # Organism: P.heparinus # Pathway: not_defined # 33 1044 30 1066 1077 416 30.0 1e-114 MNQGWARVWKKGISFLTAIAISATAWFSLPDKTLAADDYSQTESFEAAAVPSTWTVENGG SAAVSGKHYKHGQSSLRWTWSNGSKLRDTQPANLAAANVKNGGMKVWIYNESPVNDKVTF NFGKITEINSGIYHYSFGVNLNFKGWRAVWVKFREEGNNPAYTKSQSNALELMQIVPPAS VPSGSLYFDNLEFSSAMIKARSADYQMPKPGIDVGASTWDNVYLYSQQQPTIPLEPTITQ QQIQAFDAIADKYEKWIYGDALQYANLTGPLKTRYDSLQAFITAGLAAYNTLHIARHPDG SITGDALYASRDPHLRKFGEDISKRVLLPLVFDYKINGNAASKQKVIDVLDYMNDQGWAE GSAFGTQDHEMNKNNGYFHAVYLMRNELKEAGIFERESRTSFWYSNFGKTFDNSVYVETT PDEFRTKFLYDLLYVLGMDHTPKKVQYMKGLIGMYEQALQTAPGYAGTIKPDGSLFHHRG VYLNAYGPDALHAASLIAYFLNGTPFALSDAAFGNIKKGLLTIEQVSNKYDMPIGATGRF PGQTRPLTGILPAYAYLALAKTPTDSELAATFMRLWDPQSILLQNELFPSADTYGVSYLD TLGGLQLADSLSKAGFSPKANPQGFWVKPYGALAVNRINDRLVGLKGWSQYAWDFEASNK FDPQTTENLSENIYGRYQSYGNLQIINNGPTSGIIESGINVGAGWDFSRWPGTTVKHFSL NELALPGGGPTRSFTDSTFAGGASLKNQYGLFAMKLHDTVYDTSFKANKSVFFFGDKLVS LGSDIVNTDDAHPTETVLFQSYMPSSSTPFWYNSTTPIVSPTYTKTVTGTTKAWIVDPYG NGYVLPNPAGTVIERGVQHSKNSSGTADTSGNYTTAYINHGTAPASSGYEYAIKVGAGAQ GTADFANNTQYTVLQKDSSAHIVQNTEPGKLLTGYAVFNSSTPINKGLLYSSSDPITAIV QQADANEVLLSVADPDLRLPKYPNQSIPNADVLKQSILKKVTVTLNGLWQLKKANSEARI LSTGAATTTVEFDAVDGKSIEIELVK >gi|333607043|gb|AFDH01000044.1| GENE 8 9947 - 11482 1399 511 aa, chain - ## HITS:1 COG:SMb21595 KEGG:ns NR:ns ## COG: SMb21595 COG1653 # Protein_GI_number: 16264783 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Sinorhizobium meliloti # 42 362 26 318 410 78 26.0 3e-14 MSNKRWNAGGALALCAALLLSGCSGISDQAAETNTKTTPEDGKEVVLTLWGGDDFLKGGD SPGQRMVKAYNEKHKGKVRVEAKYMPWAEYHTAIQAAATSNELPDVFVTPQNTDVRTVVA NGWALPFDGIVSDNWKKQFAEGSFQEGVNLIDGKTYSWPITGPVLTSILYYNKDVLKNAG LDPEKPPKTWDELRSMAKTVTEKGKGDVYGLVFSGGESATASGIAKIVDGLAAGLNKEEV GDGSYRFNYKNGTYAFDSKATIDSFNFLNELKNDGSILPSSYTMKLAEATVLFGQAKAAF FIEGRARMWIIKRDTPDANFGLAGVPTQDGSSPGYYYNRATATGYLISANTKHPKEAGEF IENGFASPLFYENYLNKGVALTPIESINNDKKLYPYPEFEQFVRLHKDLLHERPNYAVRN PQTAKVIVELGALSQPKIKPAFGEILQAGLTGAQKDWAGALKAYNDKADKGLDDAIGKIK SGGVNVSRNDFAFPNWNPDKDFTEEDYKQLK >gi|333607043|gb|AFDH01000044.1| GENE 9 11529 - 12371 908 280 aa, chain - ## HITS:1 COG:SMc04137 KEGG:ns NR:ns ## COG: SMc04137 COG0395 # Protein_GI_number: 15963868 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Sinorhizobium meliloti # 4 275 19 289 295 175 37.0 1e-43 MKRKRGGRSPLLVAAHLGLIGVGIVWIYPFVWMLMSSFKTNTEYITSGISLLPEKFRFTN YQRAWETAHFSVYFWNTVVVTVSVVLIVIAVCSLTGYAIGRYRFRGRLLFISAITATMFM PKGYTIIPTYMLVNEIGLNNSIWGVILAEVGGGHVLFILLFVAYFRGLPKELEESAEMDG SGFFRTFAQIMLPLAKPIIATSAIMQFMWTWNAFLMPLVFTLSKPELRTLGVGMYQFVGE QTMDWTGMAAAASIALVPILAVFIALQRYFIEGVAGAVKG >gi|333607043|gb|AFDH01000044.1| GENE 10 12396 - 13361 839 321 aa, chain - ## HITS:1 COG:TM0811 KEGG:ns NR:ns ## COG: TM0811 COG1175 # Protein_GI_number: 15643574 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Thermotoga maritima # 23 318 10 297 300 164 35.0 3e-40 METAVQTHSRGSAEYKRSRLHYRNRKALWCWLFIAPQLTLFLFFTVYPIAMSYVYAFFDW SGYGPLHAFIGWDNFRETLTDPLFWNAFRNSLVFMVCLVGIQVPLALLTALLLNADWMRG KVIYRTIYFLPVVTTTAVVGLVMRFIFGAYKGLVNEMLLRIGIIPKPIDWLGSADTALLI VILVGIWKSFGMKLIYWLAGIQSLPKELFEAARIDGASHLQLFRYITMPLLIPVGSVILL VSAVNALHVFDLVKSMTEGGPAFKTDMVDVYIYRYAFAGKGEARIGFASAAGVIYGIAVM MISLLLGLFVRLSGGRKSAGG >gi|333607043|gb|AFDH01000044.1| GENE 11 13512 - 15017 982 501 aa, chain - ## HITS:1 COG:no KEGG:Bache_1618 NR:ns ## KEGG: Bache_1618 # Name: not_defined # Def: hypothetical protein # Organism: B.helcogenes # Pathway: not_defined # 1 498 44 538 542 372 40.0 1e-101 MNLYWGDLHNHCGISYGFGGLENALKAAKSQLDFCAIIGHGSWHDMPDRTQGLEYLVDFH TEGFAKLRGNWEQVRETVKSFHVPHEFVTFQGYEAHSSRYGDHHFVSPDDDLPLVGGSST AAILEQLSEYRVIAVPHHVGYTPGYRGGNWDSFDPNVSPIVEVYSKHGSGLSDHSPYPYY HDMGPRDSRSSVYAALKRKLRFGFVGSTDHHAGYPGSYGDGRLAVLAESKTREAIWDAIL ARRTYAVTGDKIRCNFTLNGAPIGSEVQGAKRNFALEVTASDQIDKVVVFKNVKPFKVFN GEDLTAPQSISDAGSSKYKVKVECGWGNSKNGYAWQGKAEIHAGKLLSVETCFRGRSILA PTPDLKDDPAMNALGNEITRQNDTSVEWTCTTFRNPTTLHPHTAGLILEVEGDRDTVVNA ELNGGIIKATIGELLEGNRTTHLRAYNSEAFMIHRAVEERLYTLRETWSDDVVESECDVY HVEIRQINGQCAWLSPIYALA >gi|333607043|gb|AFDH01000044.1| GENE 12 15072 - 16214 747 380 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_0964 NR:ns ## KEGG: GYMC10_0964 # Name: not_defined # Def: glycosyl hydrolase family 88 # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 4 380 3 377 378 394 53.0 1e-108 MSSTDAEMNWVEEAWQFAAAKVIRLNASIGDNFVHVSHEGSYDRTRSHAWTAGFWPGLLW LVYRDTLNETLRVTAERCEQKLDAGIDDFVNLHHDVGFIWMPSSVANYKLTGNPLSKIRA LKVASWLAGRFNVRGKFIRAWNEGSGIGSRSNAGWAIIDCTMNLSLLLWASLVTGDPRYR HIAVEHANTVLRHFVREDGSCCHIVAFNPETGERIEALGGQGYAPDSAWSRGSAWALYGL ALLYRYTRDEAYLQGSRRIAEFFLAHLPEDNVAPWDYSFPDKERVHKDSSAAAIAASGLL LLSELEKEEAAGKRYGVNARRILKSLCEHYAVWGDKDEAILLHGTGNFPANKNIDAGLIY GDYFFVEALAKLRGQKETFW >gi|333607043|gb|AFDH01000044.1| GENE 13 16232 - 17704 661 490 aa, chain - ## HITS:1 COG:mlr3684 KEGG:ns NR:ns ## COG: mlr3684 COG3119 # Protein_GI_number: 13473175 # Func_class: P Inorganic ion transport and metabolism # Function: Arylsulfatase A and related enzymes # Organism: Mesorhizobium loti # 1 448 1 479 522 133 27.0 7e-31 MSGKPDKPHVVLILADQLRWDAFGGHTPNLNRLRAESVDFTRAYCASPLCVPARGSFLTG KYPNVTGSLINAWTEQERRHGNVRADHTHWYDLLESEWDSWHTGKQHLVAEVKPEHVHDS KTHWLPLEERYEAFLKERGKPKPGGKAYQGPVPEQVYGAVTRMRNYSIPATGCYEEGLDY FYDGFILKDCLHAIRSRDRSKPFALTAMFVAPHPPFNIPEPWYSMIQDAELPDNVGEWGD NQSPLQLYNLPGLLGNTYSRREWKRIWNVYLGLTALLDHCVGEVIGQLKQEGIYDETLIV FASDHGEMLGSHRLWQKMCMYEEAVRTPLFLKFPRGFSPAIRSSNALVSGVDVLPTLCDY LQIAAPENVSGISLMPLIDGKEERLDRERIFIQFDGNGARGNFQRCVLEGFYKLIVDMFK DELFIELYDQQSDPLEMRNLAFLPEQHSRIDSMLSALRAHMRDTADMLTVPEDAYERFLS HYGPFQTHRK >gi|333607043|gb|AFDH01000044.1| GENE 14 17899 - 19104 332 401 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163762640|ref|ZP_02169704.1| ribosomal protein L33 [Bacillus selenitireducens MLS10] # 132 386 56 310 323 132 30 4e-30 METIRKVVDQKGSKSAIIQTLRLYGSMSRIELAQRTELSRATISMSIQELIELGIAHETE IRQSTGGRRPTDVELMPHTHLVLGADLNQHGWMLGAFDLLGNTVDSRPITFSRLTPEAAF RALVDELPAFISNLDKSPMPLLGISLPGIVDSNHGVLRSSAVLGWQQVEWGPLFERELGW PTTLINRSRARGLSECRYGSGKEHRHMIYIGIDAGIGAGIYVDRELIHGAIGGAGEIGHT TVTDDGPLCPCGNTGCLQTLSAAQAIELEARRLLRSGAASSLQPQTDSDLQLLRAEHVCA AAEHGDELAAQIIEKAGSYLGTAMANLVNLLNPEAIILGGPIPKDSTLYVRTAEKVMRQR AMSTLSWDTEVKVGQFKEIGGALGAANFMLDKHLSFSYLAP >gi|333607043|gb|AFDH01000044.1| GENE 15 19155 - 20588 508 477 aa, chain - ## HITS:1 COG:BMEII0110 KEGG:ns NR:ns ## COG: BMEII0110 COG3119 # Protein_GI_number: 17988454 # Func_class: P Inorganic ion transport and metabolism # Function: Arylsulfatase A and related enzymes # Organism: Brucella melitensis # 1 477 1 487 495 302 37.0 8e-82 MRIIYLDIDSLRPDHMGCYGYNRKTTPNIDAIAAQGARFNHCYCASSPCVPSRASFISGR FGINHGALTHWGPGYDFYYPEGENHSEPYAFFTRRLREAGYKTVTFSSFGDRHHAWWYFA GWNEVHTHTLKEGNEDADEVNAAVIPWLKRHGKEEDYFLHVQYWDPHTLYTYPESYAAQW DESTAKAFPSEERIAEHQADRFPHSAVYLHTDASFPDTMPRKISNRGDFVHLLNGYDGGI SYMDHHVGEIVETLRELGIEDDVCFIISADHGESMGEHGIYAEHASATESVHHLPLIMRV PGVTKPGTVVDGLIYNVDVIATLTELTGLTVPSGWDGESFLRVLRDEPWQSRDYLIMDHA LYTCQRAVRDPIWYFIRTYHSGLYTFEPVSLYNMENDPHQTNNVAGQYPEIVQKMDRRLE EWKHRQVSKHGHFDDPLQKVIESGPWKYVTLDGWISALRGHGDHKSADALERLYAGR >gi|333607043|gb|AFDH01000044.1| GENE 16 21002 - 21394 91 130 aa, chain - ## HITS:1 COG:no KEGG:Amet_1370 NR:ns ## KEGG: Amet_1370 # Name: not_defined # Def: triple helix repeat-containing collagen # Organism: A.metalliredigens # Pathway: not_defined # 1 130 81 210 210 182 83.0 3e-45 MPPDNAATVAPNTDVSFPQDGPISGTEITRVNASSFNLANIGTYQVLFQVGVNEPGQLIL TLNGADLAYTVVGRATGTSQIVGLALVQTTVINSVITVRNPAGNAAALTITPLAGGTRPV SAHLVITQIA >gi|333607043|gb|AFDH01000044.1| GENE 17 21421 - 21561 87 46 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MQELLEQLAQLAWQDQQDRQDQQDQQDQQDQQERRVQRDPQGRQVE >gi|333607043|gb|AFDH01000044.1| GENE 18 22330 - 23301 677 323 aa, chain - ## HITS:1 COG:MK0248 KEGG:ns NR:ns ## COG: MK0248 COG0673 # Protein_GI_number: 20093688 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Methanopyrus kandleri AV19 # 2 242 3 235 317 121 31.0 2e-27 MVRVGVVGAGIIASEHFKHIHDHQEAELVAICDIAAKNAEQAAKTYGAAAYTDYRLMFEN ENLDALFICVPPFAHGSMEEEAAGRGIHLLVEKPLGLNLDEVRRKAEVIREAGILAGSGY CLRYLESVRQAKTYLTGKDIAMVRAYRFGGVPPMPWWGDPAKSGGQLVEQTTHNVDLMIY LAGGVRKISADSARLLFKDSSGIEIPDVTSVNMVFESGAVGHIDTGFIPQPDDRSSLEIM GRGFRLTLEGASLTIAEEGKTTTYLGKGDFYRQQDHAFIDAVKTGNAELILAPYDEALKT LEVTLAANDSAASGLPVAINKRV >gi|333607043|gb|AFDH01000044.1| GENE 19 23320 - 24150 472 276 aa, chain - ## HITS:1 COG:sgbU KEGG:ns NR:ns ## COG: sgbU COG3623 # Protein_GI_number: 16131453 # Func_class: G Carbohydrate transport and metabolism # Function: Putative L-xylulose-5-phosphate 3-epimerase # Organism: Escherichia coli K12 # 20 249 34 267 297 70 27.0 4e-12 MKKGINQWCFPPGTPLEKVLKVSAEAGFHTVELNLYASGGVGLTMDTTPAEARKTGELVR SYGLSISSLSTEMLGKFPLSSPDPLIRAKGVHSISRQIHLAAELGVDTILIVPGRVCPDA SYEEVWQRSRAELAPLVKEAEDTGVRLAVENVWNKFLWSPLEMVRYIDEFASPFVCAYFD VGNTLAFGLPEQWIKTLGSRIKKVHVKDFKTGVGNYQGFVPLLSGDVNWTAVREALEEIG FVDSLTAELDAYSGFPDQLIYDTARHIDVIIGRKPH >gi|333607043|gb|AFDH01000044.1| GENE 20 24230 - 25609 1206 459 aa, chain - ## HITS:1 COG:BH1864 KEGG:ns NR:ns ## COG: BH1864 COG1653 # Protein_GI_number: 15614427 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Bacillus halodurans # 1 225 4 221 461 60 25.0 1e-08 MKKVMLTVLSGMLACTLAGCSDSGSADVTDGAEIKKVSDLSGTVRVALAGWKLENGIDPL TGNETIGLNQYLEQTFNKMYPNLKLEVYQIPWENVKAKQSAMLLSKDVDILYTGGAFASQ WYQEGLLRDLDDLIKSDPLFKPDMYLQGIWNNSYSTKSPDGSKQFGIPSVLGRRLTVYDK KMFEEWGVQPLSEKPTPQEVLEKAKKMQGNNPKTGEQNYGLYWSGNTLNGSTFVALTHAF GAPGAEGNLKDIKQVKWKLNTPEMAKVMEWLKEAAKLPPAGFVNAQGAENFGLAKNNIAI HLDGTGGSTMSEFRSKKDQALLDRFEPVMNLGPKGEGWVAVDPFVMAKDAKDVKASWEVL KFLSGYETQKYLYKNYAYTPTLKDADFVDANDKFVKTALKIAEVGHSELMDEANPFFMSD IVPAVNGYISKAASGSAPDVQTFLNDLQARAEKWSASLK >gi|333607043|gb|AFDH01000044.1| GENE 21 25680 - 26549 739 289 aa, chain - ## HITS:1 COG:lin0219 KEGG:ns NR:ns ## COG: lin0219 COG0395 # Protein_GI_number: 16799296 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Listeria innocua # 26 289 22 282 282 181 39.0 2e-45 MPPAAYPRAPLLRKKVPFNQWILLLILFLGSFIMIVPFLWMLVTSFDWGARLNITFPPKL WPEEPTIKTYKAAFTNIKMMRYIGNSAVVSGGVIIVSALSALMSGYALSKIRFKGAGIVL LLALSTMMIPFEMTMIPQYLLFSKMGLIDTYWAFYLPALNYAFGTFLAKAFFDQLPSALR EAAVLDGAKEFIVFSRVYLPLCTPIIATMVILLFLGVWNEMLWPLLALKTASKYTIQIGL AMFTYNNGINQQPSIIMAATTVSLLPVIVVYLFLQRYIIESIALSGIKQ >gi|333607043|gb|AFDH01000044.1| GENE 22 26623 - 27579 775 318 aa, chain - ## HITS:1 COG:BH3689 KEGG:ns NR:ns ## COG: BH3689 COG1175 # Protein_GI_number: 15616251 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Bacillus halodurans # 17 306 2 289 300 171 38.0 2e-42 MPSKSTLKAYTSIDRKSKQVNRKRFTRNDWMGYLFSAPLILGVLVFAIYPMFAALYMSFQ QTTGLTLSGNCVGWSNYTYVLQDPIFWQALENTFLMGILSVLLGIGLSFILASLINNLRW TFGKNFFKAVYFLPNVVSAVATSLLFSFLFFPSKEGLLNFVLGWIGLDPVGWFTNPAVSR FSIVLMSLWGALGYNTIIFLAGLQSVPRDLYEAAEVDGASAYSKWLYITIPYLRPIFGFM LIMGTIGGMKRFTDVWLLGGTAGNPGGSLMTVVLYIYRNAFLAAQMGLATAASYLLFVII LLLTTVLMMVNRRKDSMD >gi|333607043|gb|AFDH01000044.1| GENE 23 28166 - 29551 689 461 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 4 453 1 451 458 270 34 1e-71 MSKLESVETLVIGSGPGGYVAALRSSQLGMKTAIVERGQLGGVCTNVGCIPSKALIAESH RYDLLRSFNQADAAASFKNAQDFKQGIVTKQAGGVRYLLNTAGVSILEGEARLVDEHTAV IEQSGQEQTVSFKYAILATGSRPIELQAFPVGGRVLSSTEALSLPEVPASLVVIGGGYIG VELGQMYAKFGTKVTILEGGEQVLPGFEADLVVPVIRRLKADGINMITGAIAEHVVQNAD SITLHYSKNQEQHHVTADYVLVTIGRKPNTDGKLGLERIGLPVTNRGLIATDEQCRTAIP HIFAIGDITAGPALAHKASYEAKVAAEAIAGLTSEVDYKAMPLVVFSDPELSSVGLSETE AKANAIPVVIGKASFGINGRALALREPEGFVKIVADPASGIVKGAQIVGVEASTLVSELA LAIEMGATVEDLAMTIHPHPTLGEVIMEAAENAVKKMRVKS >gi|333607043|gb|AFDH01000044.1| GENE 24 29751 - 30326 292 191 aa, chain + ## HITS:1 COG:PA4831 KEGG:ns NR:ns ## COG: PA4831 COG1309 # Protein_GI_number: 15600024 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Pseudomonas aeruginosa # 1 184 1 182 186 106 36.0 2e-23 MPYPKGHKTKVRNKIVESAAQAFRTKGIHDVSVPFIMKGAGLTHGGFYAHFDNKEQLVAE ACRYAITDTIALLQKAADQEKQTPKINTVIDYYLSTYHRDKTEMGCIIPALSAEISRSSE DVREIFTHEVERMIAFISNLAEVDASKGSALFSTMVGSLVLARTVNDPELSGSLLSAGKH SAKELVRTFRT >gi|333607043|gb|AFDH01000044.1| GENE 25 30405 - 30485 73 26 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFHSNVRRQETAKEAASLTWGAVSLS >gi|333607043|gb|AFDH01000044.1| GENE 26 30502 - 31365 153 287 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_3529 NR:ns ## KEGG: GYMC10_3529 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 287 1 290 290 230 42.0 6e-59 MTPQIMRILKKLYRSDNYDYDRERSVSIYSESALSEKEREMLEQYGWISNDVVAFTNHDD ILQKLLSLKENPALSQKRCIETFIAGVGGSYPRGRSVLSAWHKLNTLTIHNYDEQGHFAC CWVCQGKDKPLFENDAYFQYCLYIGHAYTSQPHYAYLNLNHLLNAPAVQPTEQDVQTFSK LMDLLRIASDVETPGQFEKRLIAAKILSGDKYTKRGILDTLAIVGVIPNPFLTLTPYTWT DFGDIASCEDRLNNTKGRSDMEMPWAGWRGSLKPNEEIITELFGDYL >gi|333607043|gb|AFDH01000044.1| GENE 27 31531 - 32991 757 486 aa, chain - ## HITS:1 COG:BS_yfnE KEGG:ns NR:ns ## COG: BS_yfnE COG0463 # Protein_GI_number: 16077797 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Bacillus subtilis # 1 244 1 258 392 89 26.0 1e-17 MKLSIVIPAYNCGPLLHKGLQYLARQDAEWFQSEQAELIVVDDGSSDGTSFYIEQIRSVL PKLRYMYRPRDEYSGRSCARNTGLREAAGEYVCFLDAGMLVPQNFVSRIFTLYEKSPAVV TLHSMYGIDLDPAVTDTSVVEGITPDNIGEIAVKLNKLPVWKDRREPFFLYMRDDIQQLA LPWELGYSGAITVPARAALDIGGFDESYKGWGVEDIDFAYRLHREGVNFRSDRQAYAIHY PHESASSGDRQAFSDYQNRIQMHTKFKELETELFPEYQGHFYGAFIEKMNTLQLSDLAAY SAEELDKVSACTALSSHTLLIGVDDPELVRHMDVSHIYVHNRPTLELFRAEFPSRVIEYS LGLRTFLPANTFELCIVTDMIRVLHPEVRAKLLKELTRISREVILLLSAGTCAPEMALSA PNKTGQSEQKEAAHEHTQTAPAFLEFDLVRSPRIRHVMEPLFWCEEDELHDLLERIKREK ASDSIA >gi|333607043|gb|AFDH01000044.1| GENE 28 33006 - 33803 789 265 aa, chain - ## HITS:1 COG:TM1404 KEGG:ns NR:ns ## COG: TM1404 COG0842 # Protein_GI_number: 15644156 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Thermotoga maritima # 11 258 4 252 256 103 30.0 3e-22 MIKMQQFWYDFSSMFYRNYIYAVKKPLYILFNLSTPLIWLLLFGQILAPISSIPDFGQSG ADYLLFFAPGVVVMTTLYASGWSGMALLEDIQSGVIEKIISTPSSRSAVILGNLSYSAAM SVVQALVIVLISVLIGASGNLTTVSVLAIILFGYLISVAISSFSYILALLTRKTVSFVTV LNLTLLPLIMLSSAMMPIRLLPKWIQFIAAINPMEWYVQVVRQVWMTGSGVTELYVPMGL IALLAVGGVLICAFIFNRTLNNDWR >gi|333607043|gb|AFDH01000044.1| GENE 29 33775 - 34767 412 330 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 9 320 10 306 311 163 32 2e-39 MSIIEVEHVTKVYDKGNVRAVNDVTLDVNEGEVFGLLGPNGAGKSTTFKMLTTLIRPTDG VIRIFGESIAKQPREIRSRIGYVSQQGGLDEGLTAYENLRWVGKLYHISSSGMERAISDA LETVDLLAVKDRLLYTYSGGMKRRLFIASALLHRPKILFLDEPTVGLDLEHRQQLWEALK VLHNRGTTVFITTHYLEEADKLCDRIMIMDSGHSVCIGEPQVLKDQVGGDQIFLSFSFSI SAVDESLLQRQIQEALPLMSLQQISVGQNGEELRLWVDYAHKHISQLIDWFASRNLHVTS VRISQPTLDDVMIQYTKRSLADDKNAAVLV >gi|333607043|gb|AFDH01000044.1| GENE 30 34748 - 35761 453 337 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTLQPAYNCLLGCFYNELTIRHGLRFPLEKWLLRPDYFQVIHCVVHGYSKLSGPHPGDLI EQFQQEFPVIRTVVPEFRDVKQAVNYARDYTGKHGFIAAAHNLKHAPFETTTYDSDSWNY LLLTEFTEKGDCRVYSPYNNEYAMVSAEQLEFMLDTAFNYRQAGKFTPYMYWECEDTQSI QNAMDRLDELELYRSAVQNYPLEFNLHEGRIYTDSLKVMREHIPPEQIRMQVNEIHAFHR ILLRSRQDLLGFLRGMGIDAGKEIEALANKWTRFTHLVALAILRNSAGEYERLYPQFEEL IRDEERLLKRLPDRFAAASPQSNLGKSGGDNDVHHRS >gi|333607043|gb|AFDH01000044.1| GENE 31 35758 - 36984 724 408 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|238062953|ref|ZP_04607662.1| ## NR: gi|238062953|ref|ZP_04607662.1| hypothetical protein MCAG_03919 [Micromonospora sp. ATCC 39149] hypothetical protein MCAG_03919 [Micromonospora sp. ATCC 39149] # 1 366 28 383 426 76 24.0 3e-12 MKVLLVTSNWAETYGHAVRSMAAAEQLTAAGHEVAVLAPASFRHLFPSGVRFYESVPKPA YIENKLPFFGYHTYEDLIFVSGHADDFHLIDTIERERATIRDFQADLVFADMQFTIAISA HTEGVRLASIVNWPLHPAHNIELEDLHPGRKLILRRVRNIWNRVLHKYGMPPVEHVCRTL FDHCQLLLVPSCKELEPELLRYEPEAEFVGQLVPDAFKEEPGWFKQWEHTCKEPLVFVYL SSLPFGINSRSTFEMMYNVFEKNPVRAVFAIGKYNSAFLDHPLQSSEERIRFEPFVPSET VMAHSSLCITPGSNSMMVSAMRHHVPGLLFPDTYERNFNAFCMERAGLGIVCGEDDLARE RFESLLHEGLAGKSTEISLRIQNQLTALEKTPRLVRLLESASRGGVTP >gi|333607043|gb|AFDH01000044.1| GENE 32 36981 - 37412 391 143 aa, chain - ## HITS:1 COG:BH3735 KEGG:ns NR:ns ## COG: BH3735 COG0764 # Protein_GI_number: 15616297 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases # Organism: Bacillus halodurans # 5 133 7 136 140 124 49.0 5e-29 MEIPVTSVLPHRYPFLLIDRVTEVEPGVWARGYKNVSINEWFFQGHFPDEPIMPGVFIAE AMGQLGAFAIHKPDQAPSVGMIASMKEIKFNKPVGPGDRLDLFYEVMSHKGPFVKGNAQA SVNGETVAKVAEMIVFLKGAEGK >gi|333607043|gb|AFDH01000044.1| GENE 33 37494 - 37739 162 81 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVHIADIKSIVIESGLFQTLDEQVESDMPLQLDSFSLIWLIEQLERRYRISIDYRTLDLE HFSTIRRIHRLVLDKLGAIQP >gi|333607043|gb|AFDH01000044.1| GENE 34 37723 - 39195 833 490 aa, chain - ## HITS:1 COG:BS_menE KEGG:ns NR:ns ## COG: BS_menE COG0318 # Protein_GI_number: 16080131 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II # Organism: Bacillus subtilis # 146 480 147 477 486 107 28.0 4e-23 MISFKPLSKTALLSSELSLSYAELNRRIGDKKKWLDDRSWKNCRVAIDLPDSYTLLEWTA ANWQQRNHVLLLDQRMKEDEKQARLRLFSPDLIISAESRNPKPVVSFFQAEVPFFLSAGD GEDSNRVAYDSKNTGEEQLLPNRWEALTLFSSGSTGTPKSITRTYQSLLDEWDGYAREEG SPSENSLVLCLVPLSHALGLMSAAMHTLLQGGTVAFPDFINGEEIVSSIERYEASHVYGV AFHYKLMEARMEEFFSQSGHVRSGKPLYLISSGGPLPADLAGRYRERIGLPIGQQYGMSE IGYISVDFTDSHPPSLGKISRHIRYEWSEEQLQLAIRLDNSPYTGKQDNWIPDPDGDGTS GILYTQDLVHIDEHGFLTVTGRSNDQISIGGLKVTLQEIEAALREHPLIREAAAVHYEHP VLERVIEAFIVWNEPTATEPLDDISHWLRNVLSDYKIPKKLHAIEQLPLSAAGKLLRGEL LKELSHGTHR >gi|333607043|gb|AFDH01000044.1| GENE 35 39192 - 39890 519 232 aa, chain - ## HITS:1 COG:no KEGG:Kfla_6069 NR:ns ## KEGG: Kfla_6069 # Name: not_defined # Def: hypothetical protein # Organism: K.flavida # Pathway: not_defined # 18 157 11 150 169 68 32.0 3e-10 MKEISEQSRRLDTRKMQVVVTGFHEQSENDPIPPLRGFVRSSYNPLIYHAAMKAAEQARS RDIQPARKAILLGSLFTDMMTLQETSKDLLQGRKVSPIMFPPSVPSSVMGYIAKELAVHG PLSCISVTAAGVRALIRQAKDYIEDGEADLVLLVLCDTRSIRSSHWISDHAGEGGDPNAL GGVISLAVESAEQAKNRGLKPVLALEPWLEKYERNAARGYGLYVPSEGVGRL >gi|333607043|gb|AFDH01000044.1| GENE 36 39887 - 41125 625 412 aa, chain - ## HITS:1 COG:BS_yjaY KEGG:ns NR:ns ## COG: BS_yjaY COG0304 # Protein_GI_number: 16078199 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: 3-oxoacyl-(acyl-carrier-protein) synthase # Organism: Bacillus subtilis # 3 406 4 411 413 246 37.0 8e-65 MDKRVVITGYGVVTPFGLGEDPILDKVFEGKHCFRPLQSIDTSRSYTKVGGEAPVEERSY KFFTEYCTERALVMAGLDPVNHRSSLEKAAVAVGNLGDGTHLLNYYEQFSPDWEAEEFAN RKSEFMRSEGDRPVSIHDSNPYEQAAAVAGIIGSTGERLAFTNACVASANAIGYGFDQVR KGRTPVAAAGGINVLYPIVFYNFDSGRAMAEEVVRPFSKHRSGLLIGDGAAILVLEELEH ALSRGAEPLAEMIGWGLSSDGFHITQPDPEGDGLARSMKTALRQANCRPEEVDYINAHGT GTPLNDSSETNALKQVFGEYARKIPVSSTKSTTGHMLEATGAVEAIISVLALTHGRIPPT ANFVETDEGLDLDYVTEGSRQKSLDVVMSNSRAFGGNNCTLLFRRWNGGESS >gi|333607043|gb|AFDH01000044.1| GENE 37 41118 - 41381 303 87 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MEAITEMKALITRICEEKMNIEVKPDVNPEEPIAQEFSLDSISLFELIVNLEEEFQFKVA DDDIDKVGKMNIAELHEFIQRQQLIHG >gi|333607043|gb|AFDH01000044.1| GENE 38 41394 - 41828 100 144 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MEGMFQSSLSQEIHCQLGCDTPYENSFFDVALITDFILLFPTYMMQQIITELLRTASKIV YVYDSDFENEYPVQPAGPMSISMPVVSPHLTPRFRTELALSPRKLMMERIQVSARSELIT LLNRGDRKIVLEPLCASGHPITAD >gi|333607043|gb|AFDH01000044.1| GENE 39 41888 - 42859 349 323 aa, chain - ## HITS:1 COG:PM0775 KEGG:ns NR:ns ## COG: PM0775 COG0463 # Protein_GI_number: 15602640 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Pasteurella multocida # 5 230 153 378 965 82 26.0 8e-16 MTYKVSFVIPTYNSGSFMAEGLRYLAAQRNESRTEFEVIVVDDGSTDDTAELVEAARESL DRLTYLYIPRDENSSRSRARNRGICAATGDLLCFLDAGIIVPPDYLDTVIDRFRERPDLV LLHMVLGLNADPERDDTTVVHKMSPLNLREEASKLSVSPVWQDSRYQALRMLRDNLDLLA APWEMGLGGAMSVSASRVHEAGGYDENFRGWGSEDIDFAYRLYRAGCSFRSERYAFVLHL PHPIVRSEDRMENDFRNKRCIHRKLWQLETEAYPHYQGMFYSAFLEKLLYIDLSLLMKNL RPPLFNTCITSTFEAHPLPYCLE >gi|333607043|gb|AFDH01000044.1| GENE 40 43171 - 43719 149 182 aa, chain + ## HITS:1 COG:no KEGG:BL05382 NR:ns ## KEGG: BL05382 # Name: not_defined # Def: hypothetical protein # Organism: B.licheniformis # Pathway: not_defined # 13 172 14 172 176 95 33.0 8e-19 MTIYADNEQDQLLISDLLLQTDGSTTRTIEIIVRNQVNIHVYEHERTVSESVPEDVRQAF PANGQFIRRLSSLTLPGRVLSYNIVYANLLTLPADLARQLDNRQFPLGKLLAEYPTRREI TETGIEHRSGMEAFAPYSLTASAYLMKKYKIMGGDSCWFYLIEYFDLDAIVRSASRIASS KP >gi|333607043|gb|AFDH01000044.1| GENE 41 44096 - 44572 57 158 aa, chain - ## HITS:1 COG:SP1019 KEGG:ns NR:ns ## COG: SP1019 COG0454 # Protein_GI_number: 15900890 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Streptococcus pneumoniae TIGR4 # 2 158 3 155 159 127 40.0 9e-30 MITLRKITLENRRAIFNLEVSEEQRRFVASNLSSMASCYVLATNGGHPFPFAIYEDEQPV GFVMLTYGITGYELPSIADDSYCILRLMIDKHNQNRGYGREAMTKILEYIRTFPAGPARY CWIPYGTDNFAAKKLYESFGFRDNGEICENEPITVLQL >gi|333607043|gb|AFDH01000044.1| GENE 42 44638 - 45165 270 175 aa, chain - ## HITS:1 COG:PA2455 KEGG:ns NR:ns ## COG: PA2455 COG3153 # Protein_GI_number: 15597651 # Func_class: R General function prediction only # Function: Predicted acetyltransferase # Organism: Pseudomonas aeruginosa # 17 175 17 175 175 89 31.0 4e-18 MVSIIQMKLEDSFKIRDIDRSETIELIYTCKNEVLEEIKTGHECSNWKEDDYNAVISRYE YELKNGGTAFGAYDGDTLVGFGVLANKFRGKENDRLQIDLMYVTRDYRRQGIGSRIMDEL SKAAIEKGAKYLYISSTETESAVNFYTSCGSAVTSEVDEELFEKEPDDIHMIKRL >gi|333607043|gb|AFDH01000044.1| GENE 43 45402 - 45899 323 165 aa, chain - ## HITS:1 COG:CAC3283 KEGG:ns NR:ns ## COG: CAC3283 COG1846 # Protein_GI_number: 15896528 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Clostridium acetobutylicum # 1 150 1 148 150 88 37.0 5e-18 MTDERKQTAEQLMESYFQAQVGGNMMQNRAVHNQKPGEIMVLYFISMHVEDESPGMKVSE ISGKLNVTSPTVTQHINSLEGQELVERHADPADRRVVRIRLSDKGKKYIQHINEARLNMF VGLVQHLGEEKSLLFAELLRNASDYMLKQQEFYIRSLLADDNDAK >gi|333607043|gb|AFDH01000044.1| GENE 44 45953 - 46276 109 107 aa, chain - ## HITS:1 COG:no KEGG:AMED_3346 NR:ns ## KEGG: AMED_3346 # Name: not_defined # Def: hypothetical protein # Organism: A.mediterranei # Pathway: not_defined # 3 101 232 330 331 103 49.0 3e-21 MFIVEWDGAQAVGLKGSYERDESEQSQYFNNSVDIFEESGVDTAFWCTFASHNLPYDEDP DRDFDRASYGIVRVLPETCGMTYPDMPWEPKEVFHTIAARYKDAMKS Prediction of potential genes in microbial genomes Time: Sun Jul 17 08:43:31 2011 Seq name: gi|333607024|gb|AFDH01000045.1| Paenibacillus sp. HGF7 contig00151, whole genome shotgun sequence Length of sequence - 19825 bp Number of predicted genes - 18, with homology - 15 Number of transcription units - 12, operones - 4 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 160 92 ## - Prom 229 - 288 12.9 - Term 311 - 361 15.2 2 2 Tu 1 . - CDS 375 - 2393 2468 ## COG0143 Methionyl-tRNA synthetase - Prom 2417 - 2476 2.1 3 3 Op 1 . - CDS 2842 - 3081 89 ## COG0759 Uncharacterized conserved protein 4 3 Op 2 . - CDS 3078 - 3512 349 ## COG0735 Fe2+/Zn2+ uptake regulation proteins 5 4 Tu 1 . - CDS 3734 - 4636 996 ## COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold - Prom 4749 - 4808 3.5 + Prom 4592 - 4651 3.5 6 5 Op 1 . + CDS 4829 - 5464 344 ## COG2761 Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis + Term 5517 - 5556 0.4 + Prom 5599 - 5658 4.6 7 5 Op 2 . + CDS 5696 - 5788 114 ## + Term 5838 - 5889 19.9 - Term 5825 - 5877 20.1 8 6 Tu 1 . - CDS 5888 - 7201 1308 ## COG1253 Hemolysins and related proteins containing CBS domains 9 7 Tu 1 . + CDS 7578 - 8393 633 ## COG2861 Uncharacterized protein conserved in bacteria + Term 8502 - 8545 8.3 - Term 8485 - 8538 15.4 10 8 Tu 1 . - CDS 8574 - 10256 1006 ## COG5492 Bacterial surface proteins containing Ig-like domains - Prom 10295 - 10354 15.5 - Term 10400 - 10452 12.4 11 9 Tu 1 . - CDS 10486 - 11487 1037 ## COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases - Prom 11610 - 11669 6.5 + Prom 11591 - 11650 5.1 12 10 Tu 1 . + CDS 11741 - 12856 1083 ## COG2070 Dioxygenases related to 2-nitropropane dioxygenase + Term 12883 - 12930 15.1 - Term 12871 - 12918 12.3 13 11 Op 1 . - CDS 12943 - 14640 1677 ## COG1073 Hydrolases of the alpha/beta superfamily - Prom 14700 - 14759 2.7 - Term 14752 - 14785 4.5 14 11 Op 2 . - CDS 14801 - 15256 561 ## COG0783 DNA-binding ferritin-like protein (oxidative damage protectant) - Prom 15315 - 15374 7.3 - Term 15379 - 15410 3.2 15 12 Op 1 1/0.000 - CDS 15428 - 17575 1836 ## COG0550 Topoisomerase IA - Prom 17654 - 17713 4.8 - Term 17727 - 17761 2.6 16 12 Op 2 . - CDS 17791 - 18966 1242 ## COG0477 Permeases of the major facilitator superfamily 17 12 Op 3 . - CDS 19007 - 19630 728 ## GY4MC1_0149 KinB signaling pathway activation protein - Term 19664 - 19700 2.2 18 12 Op 4 . - CDS 19722 - 19823 128 ## Predicted protein(s) >gi|333607024|gb|AFDH01000045.1| GENE 1 1 - 160 92 53 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKRRRILTGLTLAISLLLAGCGGGQKSAVAEDKINITTSFYPLYDFAVKVGGS >gi|333607024|gb|AFDH01000045.1| GENE 2 375 - 2393 2468 672 aa, chain - ## HITS:1 COG:BH0053_1 KEGG:ns NR:ns ## COG: BH0053_1 COG0143 # Protein_GI_number: 15612616 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA synthetase # Organism: Bacillus halodurans # 1 532 1 542 555 817 72.0 0 MDNNRKTFYLTTPIYYPSDKLHIGHAYTTVAGDAMARYKRLRGYDVMYLTGTDEHGQKIE RKAKEKGLTPQAFVDEIVDGIKSLWSRLDISYDDFIRTTDQRHKDTVQKIFDRLTQQGDI YLDTYEGWYCTPCESFFLENKLVDGKCPDCGRPVEWVKEESYFFRMSKYADRLLKYYEEN PEFIQPESRKNEMINNFIKPGLEDLAVSRTTFDWGIKVPGNPKHVIYVWIDALTNYITAL GYGSEDPSKYERYWPADVHLVGKEIVRFHTIYWPIMLMALDLPLPKKVFAHGWLLMKDGK MSKSKGNVVDPVTLIDHYGLDALRYYLLREVPFGSDGTFTPEAFVERINYDLANDLGNLL NRTLAMLGKYFDGVVPDFHPGVTAFDKELIATAKETVETVEAQMEKMEFSTALAAIWALV RRANKYIDETQPWALAKDDVNHGTLGSVMYALFETQRIVSVLLQPFLTRTPAKIWEQLGI QDGTLTAWDSAHTFGLLPAGTKTAKGDPLFPRLDMAEEVAFIAAAMTGGQAPAGEAAAEP ASAAEGSAPAGKTPAEDAKPAPEAKPEIGIDDFAKVELRVAQVTAAEPVKGADKLLQLQL DLGYEQRQVVSGIAKYYKPEELVGRKVICVTNLKPVKLRGVQSQGMILAASEGDGLTLAT VPDSMPNGAIVK >gi|333607024|gb|AFDH01000045.1| GENE 3 2842 - 3081 89 79 aa, chain - ## HITS:1 COG:BS_ytjA KEGG:ns NR:ns ## COG: BS_ytjA COG0759 # Protein_GI_number: 16080120 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 1 74 1 74 75 97 63.0 7e-21 MKKVLQAPIHAYRKYVSPLKPPTCRFYPTCSQYALEAIERHGPLYGSWLAAKRICRCHPF HPGGVDPVPPPRKQGRNTG >gi|333607024|gb|AFDH01000045.1| GENE 4 3078 - 3512 349 144 aa, chain - ## HITS:1 COG:BS_zur KEGG:ns NR:ns ## COG: BS_zur COG0735 # Protein_GI_number: 16079565 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+/Zn2+ uptake regulation proteins # Organism: Bacillus subtilis # 8 142 1 135 145 113 40.0 1e-25 MQLGGTAVKAEEIIQAMSEQGMRITDQRRTLAELFAKSEGYVTPKAVYESMGKTYGGLSF DTVYRNLRIMHDMGVLEQFVFEDGIKFRARCSEMDHHHHLICLQCEKTIPFVFCPMDEVK GLPEDFKAVKHKFEIYGYCKDCQK >gi|333607024|gb|AFDH01000045.1| GENE 5 3734 - 4636 996 300 aa, chain - ## HITS:1 COG:SMc02332 KEGG:ns NR:ns ## COG: SMc02332 COG2220 # Protein_GI_number: 15966311 # Func_class: R General function prediction only # Function: Predicted Zn-dependent hydrolases of the beta-lactamase fold # Organism: Sinorhizobium meliloti # 22 258 14 257 286 168 38.0 9e-42 MADKKDKNKDKTKRGEPVIGQIDRTLVPDKALALWHLGQEGIAFKAAGIIGYVDPYLSNY IDDEFGHSPRNFETPLSPELIGHADLVLITHDHPDHLDPVSVRAIAIASPQASWICPAPV VPQLTELGIAPDAVIGARAGQMIDFRDMRITPVAGKHEDFETDENGNHRYLGYVIELNGV TLYHAGDTVGYAGLLETLRPHRIDIACLPINGRDIKRYEANLMGNMNFREAADLGVGIGA DLIVPMHYDLFAFNTENPAYFVDYVHHTYPHQKFKLFAPGERLIYYADDEMKESGGESGD >gi|333607024|gb|AFDH01000045.1| GENE 6 4829 - 5464 344 211 aa, chain + ## HITS:1 COG:AGc3262 KEGG:ns NR:ns ## COG: AGc3262 COG2761 # Protein_GI_number: 15889078 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 1 208 24 232 242 126 32.0 3e-29 MIIDVFQDTVCPWCRIGKSYLTEALGLWKGEHVSVRFRAFRLDPSIPPKGVPFTEAMNRK LQDPGGEKLQAVLDGVTRAGRQAGVPFRFDRILSMPDTRLSHQLIAAVPESSKSLVLDRI YRAYFEEGLDIGTESVLLRIAGECGLNPAETAKRLHHEDVENSVRADYALAKRLNINGVP FFILNKKVGFSGARPPEALLDIMKRVSENQE >gi|333607024|gb|AFDH01000045.1| GENE 7 5696 - 5788 114 30 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSGYGAGVGFTSTAVILVLYILLVIILATF >gi|333607024|gb|AFDH01000045.1| GENE 8 5888 - 7201 1308 437 aa, chain - ## HITS:1 COG:CAC1422 KEGG:ns NR:ns ## COG: CAC1422 COG1253 # Protein_GI_number: 15894701 # Func_class: R General function prediction only # Function: Hemolysins and related proteins containing CBS domains # Organism: Clostridium acetobutylicum # 13 422 15 426 428 403 49.0 1e-112 MLLNFVLIVVLVLLNGFFVAAEFAMVKVRASRIDALVLEGNVKARFAGKIVQNMNAYLSA CQLGITLTSLALGWIGEPTVAYVLEPLLVNIGVPPVIIHTISFIIAFSVITAFHIIIGEQ FPKTYAIRKSEEVTLWVAGPVLIFYKIMYPFIWMLNGTSNWLLRKSGIEPEGDHDTVHTE DEIRLLMKESHRNGLIDNTELTLVDNIFEFTETNAREIMIPRTEMVCLHAAHSFEENKEM AIQELYTRYPVCDPDKDNIIGFVHIKDLLKASDQLDDIRKIIRPLMTVPESMPISTLLKL MQKRKTEVALLIDEYGGTSGLVTVEDILEEIVGELQDEFDHERPVMEKKDEFTYSIDGMM LIEEVNNHFGTEIETEHYDTIGGWIYSQVEIPPMKNQRIHLGPLQFIIDEVEHMRIVRLI VRKEPPEEQVLLQQVVS >gi|333607024|gb|AFDH01000045.1| GENE 9 7578 - 8393 633 271 aa, chain + ## HITS:1 COG:BH1492 KEGG:ns NR:ns ## COG: BH1492 COG2861 # Protein_GI_number: 15614055 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 14 264 7 256 273 186 39.0 4e-47 MPGIRFRSRRLLVLTLLLAGLSICTGLEGAASAHVDEPPAVRKAAIIIDDLGNNMKGTEA ILDLPFPITAAVMPFLPSSHSDAEKAFGKGHDVIVHLPMEPLSGRKSWLGPGVITTDLSD AEVRKRVNAAIDDIPHAIGVNNHMGSKATGDERVMRLVMEVLRERGLFFLDSHTNYRSIA CREAKKAGVPCLENHLFLDDIHTKSKVTQQIQLIGSHSKAHQPCIAIGHVGAKGEITASA LRDTLPKLKDTLSFVKLSELYKKPPAPETAP >gi|333607024|gb|AFDH01000045.1| GENE 10 8574 - 10256 1006 560 aa, chain - ## HITS:1 COG:CAC2107 KEGG:ns NR:ns ## COG: CAC2107 COG5492 # Protein_GI_number: 15895377 # Func_class: N Cell motility # Function: Bacterial surface proteins containing Ig-like domains # Organism: Clostridium acetobutylicum # 407 538 310 438 439 69 35.0 2e-11 MIKKLSLFSFLLAFFICVVSQNEAAAAGTYSGGLLDNVPLKTGPTFLQPTGADVKEITDG DPSTKYYMKDPLVWHKFEEEQTIGAVIVNAKGAKVEFYNSNGEWLDTYTPVLNDAVESLP KPVEHVSIIALKHPGYNVFEWNVFKKAIYKAEPTMITWIQAGDKSVDLDWKATGAESYNV RRSASPGGPYALLANVKGTAYADESVVNGTTYYYVVTSVNAAGESAPSLERSIKPEATIY TGGLLDRKVLDLGTTYGKSTGTTRIMTDNDQYSMQLVRGMAWYSFKTPVNIESIIVYGAP GSKIEFYDANNNQIGDAFVPTLNNKIENLPSPMEKVTSVVLKHTEGNFREWNVFGKAVEP PVAAPLNLTAAGGDKKVTLAWNSVNNATSYNVKRSTTAGGPYVTVGSVTGATYTYTDTNV VNGTTYYYVVTAVAPAGESAPSNEASATPKAGDVVVPPEEESGDSAILVITLNNGTEKEY DLSMNEVNAFIAWYEGRAAGKGPVMFAIDKHENNKGPFKNRKDYILYDKIITFEVNAYDN GKGENGGTTPPVNPEDPSEL >gi|333607024|gb|AFDH01000045.1| GENE 11 10486 - 11487 1037 333 aa, chain - ## HITS:1 COG:AGc1508 KEGG:ns NR:ns ## COG: AGc1508 COG0604 # Protein_GI_number: 15888165 # Func_class: C Energy production and conversion; R General function prediction only # Function: NADPH:quinone reductase and related Zn-dependent oxidoreductases # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 1 329 22 348 348 273 42.0 5e-73 MKAVQIKQYGGPEELYIGERPDPVAGEGELLIQVKAAGLNRADLMQREGKYPAVPGESDI LGLEMAGVVIGVGSGVTGWREGERVCALLPGGGYSERVAVPAGMAMRLPANLSYAEGAAI PEAFLTAYLNLVKLGGMTEGDYVLIHAGASGVGSAAIQLAREFGAHALVTAGSSEKLEFC RELGAEGGWNYREGSFVPWLNEATGGHGSDIVLDLVGAPYFTDHLAGAAVGGRIVLVGMT GGSEVPMESFDLNPLLMKRISIIGSTLRSRSREDKIRLTQQFWQQAGPGFADGALHPVVD RIFPWSRVREAHEWMEANRNKGKVILDITADAE >gi|333607024|gb|AFDH01000045.1| GENE 12 11741 - 12856 1083 371 aa, chain + ## HITS:1 COG:SA0781 KEGG:ns NR:ns ## COG: SA0781 COG2070 # Protein_GI_number: 15926509 # Func_class: R General function prediction only # Function: Dioxygenases related to 2-nitropropane dioxygenase # Organism: Staphylococcus aureus N315 # 8 363 5 352 355 283 42.0 5e-76 MNPSNRSNRICTLFQIRYPLIQAGMAGGSTTPALVAAVSEAGGLGTLGAGYMTPEQISAA VREIRSRTGRPFAVNLFILPEPGQGPHEQEQRQKADEAWRLLAPLREKTGTREERPPAVW SESYREQLAVLLEERVPVFSSTFDVPDAATLAECARLGIRTIGTATTVREAAALEEAGVD AIVAQGSEAGGHRGTFPRENDGEPPLIGTMALVPQIADRVRVPVIAAGGIMDGRGIAAAL ALGADAVQLGTAFLACVESGAHAVHKEAVLSASDESTVLTRAVSGKHARGIRTALLDELQ PLESRLPSYPAQNTLTQGIRRSAAKAGNPAYMAMWAGQAASLAQHNGAAQIIEELVRETG EVLNRISGRKL >gi|333607024|gb|AFDH01000045.1| GENE 13 12943 - 14640 1677 565 aa, chain - ## HITS:1 COG:TM0336 KEGG:ns NR:ns ## COG: TM0336 COG1073 # Protein_GI_number: 15643104 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Thermotoga maritima # 143 563 17 412 412 171 30.0 4e-42 MKKHLPIWQSAVIASMLLAGAVPAAAASAGTVNAETAAAGPVSASDTNAATVLAPLRLVS ETAGAKVAWNNEERTVTLSLGSDTITLAIGKSTALINDKEVELGAAVQIKDDKTFVPLNF LTEALHTAVSWDPQNGKLIIPKGDLKAAASAFASHWLQGENESAVSYFNSDLKKSLNANQ LTYISQYYTNMYGPITGQLGAGTTSNSVHENVYLTYETQSTLPFQMTVRFDKQDRIDDLY IPPYYSPDTYRKPSYDDSGAYVEKEVTLGEGRLALPGTLTLPSKPGPHPVVVLVHGSGAN DRDESIGGSKLFRDMAVGLAAQGIATLRYEKVTREHPFKSATPAFTVQDETVADAVYAVN QLAKTEGIDPQRIFVAGHSQGGMVVPRVIDGVKDVKLAGAVVLAGPTNSIEDVVLEQSKY QLEVSRERGLDTSILEQQVAFWEQQLKLIKDPQYSVDNLPKDLALSNAYWWMDFRNYSAS EIAKKQDKPMLILQGDNDAQVLAYHLDKWKEALKDRTNVEYKLYPKLNHVFAEVDEKSTG AEYNEPANTPASVIKDIADWVKKTK >gi|333607024|gb|AFDH01000045.1| GENE 14 14801 - 15256 561 151 aa, chain - ## HITS:1 COG:BH1018 KEGG:ns NR:ns ## COG: BH1018 COG0783 # Protein_GI_number: 15613581 # Func_class: P Inorganic ion transport and metabolism # Function: DNA-binding ferritin-like protein (oxidative damage protectant) # Organism: Bacillus halodurans # 4 148 1 145 146 151 54.0 4e-37 MTTLTRVKTVTQLNHLAADWTVLSMKLRNFHWFVNGPHFFTLHEKFEEFYNEAAQHIDEI AERVLALKGKPVATLAETLKLARLQEAAGSETAEQMVEAVRGDFELLVGFLQESITAAEE EGDEPTADMLTELQASLQKHVWMLGAFLGRA >gi|333607024|gb|AFDH01000045.1| GENE 15 15428 - 17575 1836 715 aa, chain - ## HITS:1 COG:CAC2947_1 KEGG:ns NR:ns ## COG: CAC2947_1 COG0550 # Protein_GI_number: 15896200 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Clostridium acetobutylicum # 1 611 1 618 618 603 48.0 1e-172 MSKSLVLAEKPSVAKEIARVLGCGQKHKSYYEGPGHVVTWALGHLVGLAEPEEYDTRYQK WNLEDLPIIPGRMKLKVLKETSHQFRAIADLAKRKDLAELIIATDSAREGELVARWIMEM VRWNKPFQRLWISSQTDKAIREGFANLKPGKQYDRLFQSAVCRAEADWLIGLNITRALTS KYDAQLSAGRVQTPTLGMIMDREKEIRNFRSVEYWTVQADFGAFRGTWRQRSGESRLFER ERVDELVQRVSGKSGKVVSVKKTEKTEPQPLAYDLTELQRDANRRFGFSAKHTLSTLQRL YEQHKLVTYPRTDSRYLTSDMTGTLKERLQSVAVGPYAPLAKPLMKGQLPVSKRIVDDSK VSDHHAIIPTDEYVNLSALSTDERKLYDLIVRRFLALFYPAARYETTAMVVEVDGEPFHV AGRVVKDAGWRSVYGPGTAADSGDGDEEDGGEGADRADLQELPALSAGDSAGTVRCRVGT HRTQPPKRHTEATLLTQMEKHHLGTPATRAEIIEKLVSSDTIEREGGCLHPTGKGTQLIE LVAEELRSPELTAKWEQELEDIARGRGRTETFLSGIRDMTKQLVTGVRTSQTEYKPHNLT NSRCPECGERLMERKSKRGKMLVCANRECEYRRSAEKQLVNRRCPQCHKKMELKTGKAGK YVQCLPCNVVEVLGESTGKVAKHQQQKLVKQYSKQEDLGSSLGDALKAALAKKDD >gi|333607024|gb|AFDH01000045.1| GENE 16 17791 - 18966 1242 391 aa, chain - ## HITS:1 COG:BH1174 KEGG:ns NR:ns ## COG: BH1174 COG0477 # Protein_GI_number: 15613737 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus halodurans # 3 365 7 372 399 196 34.0 6e-50 MNKRVVFIMLLMFTVYLGFGLIIPVLPELLHGIPKGETHLGWVLSIYSIMSFLVSPLWGG LSDKIGRRPVLLTGIFGFMISFILLALAGTNLPLLYLSRILGGICSGALSGVALAYVADI TTHEERTKSMGFVGMSIGLGFIFGPAIGGTLSVFSLSLPFWGAALLSAGIFCAGFLKLKE SLPENRGQHQGNKPSRWSLLRGKLGYLYMMTFFVTFSLAGLEATFQYFQITRFGVTPLQI GLMFMFSGFADALVQGGLVRVIAKKKKEKVAILGGLLASAVGFLLVLGSAGFWSATLALT VFSAGNAMIRPCVNSLLTQRTRHGQGVTTGLSSSMDSLGRIAGPITGTSLFGIQHGLPFA AGAVVSVLAGLLLLRFSQLDRESGEELPETV >gi|333607024|gb|AFDH01000045.1| GENE 17 19007 - 19630 728 207 aa, chain - ## HITS:1 COG:no KEGG:GY4MC1_0149 NR:ns ## KEGG: GY4MC1_0149 # Name: not_defined # Def: KinB signaling pathway activation protein # Organism: Geobacillus_Y4.1MC1 # Pathway: not_defined # 30 195 37 200 201 97 40.0 2e-19 MLFLFWSTMLGGLVLGIAVWGIGKAIFPDFVSMDVAVSGASEFSMIIMATLTMCMISVVG YFAYLMTNYYMIGILRNRKGAWSGLQLFFIVMAIANLFFLRYQSFAEGKESLAMYVGTPV LIAVAGLIVSQVKVKLTNASARIPTLFFMIVVTCLEMLPAFSINDLTSLLYVSLVLLACN AWQILIFHKLTNTKKHQQMKKAQVKKA >gi|333607024|gb|AFDH01000045.1| GENE 18 19722 - 19823 128 33 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKRGQGKESSTKILFVVWAVLILIVVLLGYGIF Prediction of potential genes in microbial genomes Time: Sun Jul 17 08:43:50 2011 Seq name: gi|333607019|gb|AFDH01000046.1| Paenibacillus sp. HGF7 contig00107, whole genome shotgun sequence Length of sequence - 2635 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 2, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 542 - 1078 216 ## PROTEIN SUPPORTED gi|227989598|ref|ZP_04036686.1| acetyltransferase, ribosomal protein N-acetylase 2 1 Op 2 . - CDS 1068 - 1721 520 ## COG1309 Transcriptional regulator - Prom 1758 - 1817 7.1 - Term 1942 - 1973 2.0 3 2 Tu 1 . - CDS 2007 - 2447 208 ## BBR47_55740 hypothetical protein - Prom 2494 - 2553 8.7 Predicted protein(s) >gi|333607019|gb|AFDH01000046.1| GENE 1 542 - 1078 216 178 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227989598|ref|ZP_04036686.1| acetyltransferase, ribosomal protein N-acetylase [Meiothermus silvanus DSM 9946] # 1 175 14 188 194 87 30 9e-18 MLFESSRVSFRKMTEEDAAIYHTWRNDMEVMRTTSPSLDLFTYAETRQFVEQVILGSGTS KSYMILDKQSGRPIGITSLIQLDYKNRSAECILDIGEKEFWGKGYGNESLRMLLDYAFLE LNLHRVSLRVFAFNDKAVALYEKIGFKREGVSRQAVFREGNWHDILHMGILQEEYKPG >gi|333607019|gb|AFDH01000046.1| GENE 2 1068 - 1721 520 217 aa, chain - ## HITS:1 COG:BS_yfiR KEGG:ns NR:ns ## COG: BS_yfiR COG1309 # Protein_GI_number: 16077904 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus subtilis # 1 184 1 186 205 94 30.0 1e-19 MSPKVNEEYKKQKKIDLLQKAKQVFIRKGYNGATMQDIMEAAGVSRGALYAYFDNIEHVY LELLRHEDRKHEIYFRSENSWQQIKNWLNKQQAEIGSIEETLVLANSQFFSSAQYRNNKE IYPYIATRYEGTMEVLTGFFEKGAAQGEFALRLPAETISRYLISFMDGLIMDTAHMGPEK TKVNEQLGALLFTLEAMLGPVQDKTETTEKENKEDVI >gi|333607019|gb|AFDH01000046.1| GENE 3 2007 - 2447 208 146 aa, chain - ## HITS:1 COG:no KEGG:BBR47_55740 NR:ns ## KEGG: BBR47_55740 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 4 141 5 142 145 75 35.0 6e-13 MFKLKKIVPALVVTASLLLSSQSAFAVSGLADTRSEALNVYPNTDYTWTLDTAADEDWFY WTNSTSSTQYLSGSLLSPAGKNYNLQLVLVTAGGWEYILNTNDNGPGQHDGFNSTLQPGD KIYFKIRPSGFDYDKSNPYKFNFKVS Prediction of potential genes in microbial genomes Time: Sun Jul 17 08:43:54 2011 Seq name: gi|333607016|gb|AFDH01000047.1| Paenibacillus sp. HGF7 contig00266, whole genome shotgun sequence Length of sequence - 2409 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 7/0.000 + CDS 81 - 884 247 ## COG1020 Non-ribosomal peptide synthetase modules and related proteins 2 1 Op 2 . + CDS 910 - 2407 242 ## COG1020 Non-ribosomal peptide synthetase modules and related proteins Predicted protein(s) >gi|333607016|gb|AFDH01000047.1| GENE 1 81 - 884 247 267 aa, chain + ## HITS:1 COG:BS_ppsA_2 KEGG:ns NR:ns ## COG: BS_ppsA_2 COG1020 # Protein_GI_number: 16078895 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Non-ribosomal peptide synthetase modules and related proteins # Organism: Bacillus subtilis # 38 263 1278 1512 1516 148 36.0 1e-35 MQKERAYWEQVAAQMAAGELRMDEQTGESGYGSCTIHLNKEATAQLIHQAGRAYNTEIND LLISALGMAVRKLTGARDVTIGMEGHGREPVHKRIDIDRTVGWFTSIYPVVVPCQEEIAE SIITTKEMLRKIPNRGLGYGLFQEQLPVRPLEIMFNYMGQMDAEAKGRKLHFFSSGKGSA EENIVNRKVNINGSLLKEQLHFSIVYDKSKLSAGKIQLFIETFHDCLIATIQFCTSQEEV AITISDTDATDLVADDLQMINELFDLD >gi|333607016|gb|AFDH01000047.1| GENE 2 910 - 2407 242 499 aa, chain + ## HITS:1 COG:BS_ppsB_1 KEGG:ns NR:ns ## COG: BS_ppsB_1 COG1020 # Protein_GI_number: 16078894 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Non-ribosomal peptide synthetase modules and related proteins # Organism: Bacillus subtilis # 5 496 1 488 1050 278 34.0 2e-74 MSSKMVLGSNIENIYSLTPVQEGMLYHKLMNGDSTAYVVQHRFELNGLINEQKVKEAIEL VTMKHDVLRTSIVYEKLTMPRQIILKNRTIEYERIDLSVIAAYDRNNEMDMIAQLDVKRG FDLQRDSLLRVKLVHFGANQYKMLWTTHHIIIDGWSLSILFSDFKTYYDMLEHGKSLQSI MSIVETDKKRIEKYGDYVKWLEQQNTIEGIAYWEKLLSDYDGTADIKSMEQKPLAVETVS LSEMKLSKEQTASLQNLAATHHITMNTIVETAWGIVLQAYTGAKDVVYGKVISGRHVAIR GIEKIVGPFIVTIPARIRYTEDDRVVEVLHSTQLQGTQSTAYSYCPLQQIMNLTKQKSEL IKYLYAFENYELDETLLTQHSEGLGLKIEAYREQTDYDLVLIVNYEHGYLRFQMQYASNR YGSKEIEAMLLRLQVVLLSFANNPERKLSELETITEEEKEQILGAFNDTYLPYAKDKTIP ALWEAQVANTPDAIAVVYE Prediction of potential genes in microbial genomes Time: Sun Jul 17 08:43:55 2011 Seq name: gi|333607014|gb|AFDH01000048.1| Paenibacillus sp. HGF7 contig00231, whole genome shotgun sequence Length of sequence - 986 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 980 377 ## COG1020 Non-ribosomal peptide synthetase modules and related proteins Predicted protein(s) >gi|333607014|gb|AFDH01000048.1| GENE 1 2 - 980 377 326 aa, chain - ## HITS:1 COG:RSp0641_7 KEGG:ns NR:ns ## COG: RSp0641_7 COG1020 # Protein_GI_number: 17548862 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Non-ribosomal peptide synthetase modules and related proteins # Organism: Ralstonia solanacearum # 1 325 489 826 1054 233 41.0 3e-61 MTYDALNRKINQVAGALRRLHIKPDDRVVIVAERSVEMIAGMYGIIKAGGAYVPVDPTIP AERMRFILNDCKPKAVLVYKTTIETDLPTINLADDKLWEGQGGNPEQVNRPDDLAYIIYT SGTTGQPKGVMLAHSGVVAMRSYLQEKYEVTQQDNVLQFANYIFDASVWEMTLSLLLGAK LTLVSQEVLSDVNSFNAFIKKNGITLTLLPPQYYLQTDISGLRVLTTGGSAANAEMIKKA GSGTRYINAYGPTESTVLATGWEYDGESEIPYPVPIGKPTSNTQIYIMEGKKLCGIGVPG ELCIAGSGVAKGYLNLPGLTAEKFIE Prediction of potential genes in microbial genomes Time: Sun Jul 17 08:44:03 2011 Seq name: gi|333606977|gb|AFDH01000049.1| Paenibacillus sp. HGF7 contig00017, whole genome shotgun sequence Length of sequence - 27192 bp Number of predicted genes - 33, with homology - 25 Number of transcription units - 25, operones - 8 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 1 - 469 -121 ## Dtox_3121 mucin 17-like protein 2 1 Op 2 . - CDS 551 - 766 128 ## - Term 839 - 895 4.2 3 2 Tu 1 . - CDS 940 - 2337 1303 ## Pjdr2_4318 hypothetical protein - Prom 2375 - 2434 5.9 + Prom 2433 - 2492 4.9 4 3 Tu 1 . + CDS 2525 - 2917 523 ## COG0509 Glycine cleavage system H protein (lipoate-binding) + Term 2941 - 2982 6.4 - Term 2996 - 3041 11.3 5 4 Tu 1 . - CDS 3158 - 4321 742 ## COG0438 Glycosyltransferase - Prom 4418 - 4477 4.2 + Prom 4529 - 4588 3.0 6 5 Op 1 . + CDS 4633 - 5376 561 ## PPE_04788 YheD 7 5 Op 2 . + CDS 5402 - 5794 438 ## COG0853 Aspartate 1-decarboxylase - Term 5814 - 5869 19.1 8 6 Tu 1 . - CDS 5877 - 5990 61 ## + Prom 6167 - 6226 2.4 9 7 Op 1 . + CDS 6254 - 7384 1155 ## COG0665 Glycine/D-amino acid oxidases (deaminating) 10 7 Op 2 . + CDS 7512 - 7697 247 ## + Term 7727 - 7767 8.1 + Prom 7803 - 7862 3.4 11 8 Tu 1 . + CDS 7931 - 8422 563 ## EAT1b_1924 hypothetical protein + Term 8464 - 8502 5.1 + Prom 8490 - 8549 4.8 12 9 Tu 1 . + CDS 8585 - 9421 796 ## COG1387 Histidinol phosphatase and related hydrolases of the PHP family + Term 9548 - 9608 2.3 - Term 9506 - 9539 1.3 13 10 Tu 1 . - CDS 9673 - 10047 253 ## + Prom 10295 - 10354 2.9 14 11 Tu 1 . + CDS 10377 - 10922 332 ## PROTEIN SUPPORTED gi|16077488|ref|NP_388302.1| hypothetical protein BSU04210 15 12 Tu 1 . + CDS 11026 - 11715 806 ## COG3142 Uncharacterized protein involved in copper resistance + Term 11802 - 11834 0.1 - Term 12035 - 12072 3.1 16 13 Op 1 . - CDS 12170 - 12265 136 ## - Prom 12292 - 12351 8.0 - Term 12298 - 12338 3.2 17 13 Op 2 . - CDS 12364 - 13536 1034 ## COG0463 Glycosyltransferases involved in cell wall biogenesis - Prom 13587 - 13646 3.0 + Prom 13725 - 13784 1.8 18 14 Tu 1 . + CDS 13822 - 14400 570 ## GYMC10_5541 sporulation protein YyaC + Prom 14638 - 14697 2.9 19 15 Op 1 . + CDS 14736 - 16556 270 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 20 15 Op 2 . + CDS 16648 - 17103 477 ## + Term 17116 - 17170 5.1 21 16 Tu 1 . + CDS 17223 - 17507 319 ## + Term 17518 - 17558 5.0 + Prom 17540 - 17599 10.8 22 17 Tu 1 . + CDS 17677 - 18738 1266 ## GYMC10_0494 copper amine oxidase domain protein + Term 18798 - 18853 15.0 + Prom 18833 - 18892 12.5 23 18 Tu 1 . + CDS 19026 - 19739 688 ## Aaci_0695 putative two component transcriptional regulator, winged helix family + Term 19772 - 19804 1.0 - Term 19727 - 19772 7.1 24 19 Tu 1 . - CDS 19814 - 20947 1323 ## Tthe_2662 hypothetical protein - Prom 21083 - 21142 1.6 - Term 21195 - 21236 9.3 25 20 Op 1 . - CDS 21277 - 22014 552 ## COG4714 Uncharacterized membrane-anchored protein conserved in bacteria 26 20 Op 2 . - CDS 22011 - 22436 366 ## COG4714 Uncharacterized membrane-anchored protein conserved in bacteria - Prom 22477 - 22536 9.4 + Prom 22436 - 22495 7.3 27 21 Op 1 . + CDS 22615 - 22896 314 ## + Term 22930 - 22993 8.2 + Prom 22981 - 23040 4.8 28 21 Op 2 . + CDS 23083 - 23742 495 ## COG0702 Predicted nucleoside-diphosphate-sugar epimerases + Term 23745 - 23801 18.1 - Term 23738 - 23783 14.6 29 22 Op 1 . - CDS 23824 - 24591 770 ## COG0730 Predicted permeases 30 22 Op 2 . - CDS 24682 - 25614 780 ## COG0726 Predicted xylanase/chitin deacetylase - Prom 25669 - 25728 1.5 31 23 Tu 1 . - CDS 25747 - 26061 370 ## PPSC2_c4510 protein - Prom 26168 - 26227 4.9 - Term 26211 - 26239 2.3 32 24 Tu 1 . - CDS 26242 - 26697 549 ## Pjdr2_4978 hypothetical protein - Prom 26718 - 26777 2.2 + Prom 26919 - 26978 6.3 33 25 Tu 1 . + CDS 27046 - 27190 189 ## BCG9842_B0057 alkaline phosphatase like protein Predicted protein(s) >gi|333606977|gb|AFDH01000049.1| GENE 1 1 - 469 -121 156 aa, chain - ## HITS:1 COG:no KEGG:Dtox_3121 NR:ns ## KEGG: Dtox_3121 # Name: not_defined # Def: mucin 17-like protein # Organism: D.acetoxidans # Pathway: not_defined # 35 125 1561 1651 1788 72 63.0 4e-12 MPYWTPAVLNGTSPPAVTDVPPVFLRLANEVRPVPAAPSAPVAPVGPVAPVAPSAPVAPV APSAPVAPVAPSAPVAPVAPSAPVAPVAPSAPVAPVAPSAPVAPSAPVAPVAPSAPVAPV APSAPSHLLLRQLPLHLLPRRLRSRWSNRSNGSSTC >gi|333606977|gb|AFDH01000049.1| GENE 2 551 - 766 128 71 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIWAFVPVPLSVNVKPDTETVRLPVVTAWKSRSPVNTPPANASENTVALGCGTAVPLKLA ATEDSRLSVPV >gi|333606977|gb|AFDH01000049.1| GENE 3 940 - 2337 1303 465 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_4318 NR:ns ## KEGG: Pjdr2_4318 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 37 463 32 454 456 428 53.0 1e-118 MNASIRLNATRFGSLLAAGALLLTVWSGPAYGQEASVPAAAALRTAEQTTLLSEEYRQFL KDQFGYTLPSSPTKGDFVKALAAVLNLEPSDKPNPFQDIKESSPYYKSALALYEKGILTQ DRLDGDQPLTQSTAVYMAVKAAGLKELAYTYPAEKAARSLAKLHADDEIPQLTPQAAQEL AAAADTELLPAGLHDAFQRNEPASVSYAEILLGRVLELQGLYKHELGRVSDPDILRKVRD AWNVQNLIQQPDLQTIVDKALQADLITGYNVKDDRYTPHFDRERSLTYGHSEIDHALQLI GLLRSENIDARVQLEPKTSAFIYLKEWGEPVQTDDYKVVKIDNGNYIAYAKEYDLSFEFA TAGQKDRFQEIVLKYAKKNSEDQSGLIAHSWWQPLYYSRTELPDYKVIANNKITKGHYYA QTFSLADKPEAIAEGIRKISPATKVESYRFWVDEPFYNYLIGEYK >gi|333606977|gb|AFDH01000049.1| GENE 4 2525 - 2917 523 130 aa, chain + ## HITS:1 COG:ML2077 KEGG:ns NR:ns ## COG: ML2077 COG0509 # Protein_GI_number: 15828123 # Func_class: E Amino acid transport and metabolism # Function: Glycine cleavage system H protein (lipoate-binding) # Organism: Mycobacterium leprae # 1 124 1 128 132 117 48.0 4e-27 MSEVKSGLLYSKEHEWVEVLSDTKIRVGMTPFAQEQLGDIVFVELPKTGASVKADDMLGS VESVKTVSDLISPVIGTVARINDTLEESPELVNTDPYGAGWVAEIDISGKEALDGLMTAD QYQAYIVSEQ >gi|333606977|gb|AFDH01000049.1| GENE 5 3158 - 4321 742 387 aa, chain - ## HITS:1 COG:aq_1080 KEGG:ns NR:ns ## COG: aq_1080 COG0438 # Protein_GI_number: 15606357 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Aquifex aeolicus # 98 380 235 500 885 95 28.0 2e-19 MSHYQVIWNGPVLGDNGIGTAGREYVLALHRLGVHVKVTPARRRSSLSTPSKRLMLALAR RPLAPKKPKVLVYHRLPHTLNIAQARKKYDYLILNAVWETTKIPRNWLPNINRFDAVCVP SVQNRIAMRRSGVRVPVYIVPHGVDSRAFNPRNKKLAVTKKGAFLFVSVFTFQHRKNPET LLRAFWEEFSARDRAALLIKTSGFSSKESGAWIRGRIAAYKKKLGIRHKTAPLHLLTGST NPRTVRGVYTAGDAFVLPTRGEGVGLPFLESLASGTPVIATGWGGHMDFVTRANSFLVPY KLKPPAAGMKKAISRSFRHLFAQKGQLWAEPDLGSLKKQMRHAYEHPELCRRKGLRGRRD MSRWTWARAGHAMKRAIEKTIASGRRR >gi|333606977|gb|AFDH01000049.1| GENE 6 4633 - 5376 561 247 aa, chain + ## HITS:1 COG:no KEGG:PPE_04788 NR:ns ## KEGG: PPE_04788 # Name: not_defined # Def: YheD # Organism: P.polymyxa # Pathway: not_defined # 8 246 7 246 246 207 45.0 4e-52 MAVRARFNKWSKYKFMRNAAGLVPHLPATSPMSERSFGEMSERYGRVVVKPVGGMQGQGI FHVSCLPDGRYEVQHENRRIKLAGRRKTYAFLSKQIGSQSYIVQQSIDRATVGERAFDLR IIVQRKKNSRRWIVTGRVAKVVGSGYFVSNTSRKGKLLLLDEALGRSSLHRLSRKALQER IDGVALACAKTLTEHFPRQVIYGIDIGLDKRGNVWIFEGNLYPSMSHFMKLKDKTMYRRI KAYGEGQ >gi|333606977|gb|AFDH01000049.1| GENE 7 5402 - 5794 438 130 aa, chain + ## HITS:1 COG:BH1689 KEGG:ns NR:ns ## COG: BH1689 COG0853 # Protein_GI_number: 15614252 # Func_class: H Coenzyme transport and metabolism # Function: Aspartate 1-decarboxylase # Organism: Bacillus halodurans # 1 126 1 126 127 165 66.0 2e-41 MFRTMMKSKLHRATVTEANLNYVGSITIDEDLMELADLLPNEKVQIVNINNGSRMETYTI TGPRGSGCVCLNGAAARLVQPGDVVIIISYALMSEETAADYAPKVVILEEGNKVAYDRYV EKHSTVPDPS >gi|333606977|gb|AFDH01000049.1| GENE 8 5877 - 5990 61 37 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSTLNKDLEEVPEESAPGISMEDFMKIAQRLQRSAGL >gi|333606977|gb|AFDH01000049.1| GENE 9 6254 - 7384 1155 376 aa, chain + ## HITS:1 COG:ECs1437 KEGG:ns NR:ns ## COG: ECs1437 COG0665 # Protein_GI_number: 15830691 # Func_class: E Amino acid transport and metabolism # Function: Glycine/D-amino acid oxidases (deaminating) # Organism: Escherichia coli O157:H7 # 4 375 2 371 372 288 41.0 9e-78 MRTRYDVIIIGAGSMGLSAGYQLALSGVQTLLLDAGNPPHEEGSHHGETRLIRHAYGGAS AYVPLALRARRLWEELERLSGETLLRPTGVLNVSREETANHRSKIANAQRYGVPLEELDA AEIHRRWPGFSLPEGWSGLYEPDGGVLLSETCLRVYRRLALEAGAELLTDTPVRSVRLDG GEASVTTPAGTFTSGRLIVTAGAAAAGILPGGLLPVTAVRKTVAWFRAEGGLYRSPGFPG FTVHTGLGEYYGFPDFDGSGVKVGRHDEGIPLSPGEPKHPFGRTAADEEELRAFMEAYLP RASGALLQGKVCLYERTPDEDFIIGRLPGHPHVSVAAGFSGHGFKFASVVGEILRDLTVD GRTSLDLTPFSPERFN >gi|333606977|gb|AFDH01000049.1| GENE 10 7512 - 7697 247 61 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MADKMSREEAGRKGGEETARTHDKDFYQEIGRKGGESRGNDSGRSDGKMSREEAGRKGGR S >gi|333606977|gb|AFDH01000049.1| GENE 11 7931 - 8422 563 163 aa, chain + ## HITS:1 COG:no KEGG:EAT1b_1924 NR:ns ## KEGG: EAT1b_1924 # Name: not_defined # Def: hypothetical protein # Organism: Exiguobacterium_AT1b # Pathway: not_defined # 62 162 37 135 249 87 46.0 2e-16 MNAHKQENSAGRSGLKLTFRRRGVGTAVLLLVLTAALAGCGSGGGGHEGHGGQGAGQGTL DTLNPIEAKVKLPAEPVKQGTEAAVEVTVTQDGKPVDDADEVLFEVWKEGAPDDKHEKIK GTHGKDGLYTLKKKFDEPGTYLIISHVTARTMHTMPQVKLQVE >gi|333606977|gb|AFDH01000049.1| GENE 12 8585 - 9421 796 278 aa, chain + ## HITS:1 COG:lin0579 KEGG:ns NR:ns ## COG: lin0579 COG1387 # Protein_GI_number: 16799654 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Histidinol phosphatase and related hydrolases of the PHP family # Organism: Listeria innocua # 4 261 2 266 275 182 35.0 4e-46 MTFKWDGHTHTKFCYHGNPAEEPAYLDRAVELGFERYTISEHPPLPDKWIDNPRLMAELA MPMEELPDYLAYAEEMKARYAGRIEVTVGLEMDYLYGREDFSDALLDQYGSRLEDVVVSV HYLPGAGGMRCIDFSADDFREGLLAHYGSMDAVAEEYYNHVEKAIEWAAGLPMRKRLGHV QLIEKFREALPPISPELIERRLTALLPKLEEAGVGIDVNVAGLRVPTCGQTYVPRWFLAA CANRDIPLIYGSDTHKPEHVGADWAWFETAFGASRAES >gi|333606977|gb|AFDH01000049.1| GENE 13 9673 - 10047 253 124 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MYKEDFYCLCKSYMNRHVRVQTKSGRTYDGMIIGVDPNYVWLKVSGGQGYGYGPDTGYGQ GYISGHVNGYGRTGPYGQPPDEFEERGFFPPAPGFPGFPGYPGPSNETILTLALFDLLTL VLLM >gi|333606977|gb|AFDH01000049.1| GENE 14 10377 - 10922 332 181 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|16077488|ref|NP_388302.1| hypothetical protein BSU04210 [Bacillus subtilis subsp. subtilis str. 168] # 1 178 1 179 183 132 38 2e-30 MRICQVDEEISLELLELKHAEALFRLTDDNREQLGQWLFWANDTKEVGDSAAFIQSTLHA FAEGKSLAAAIMVRGELAGVIDYHALVPAHGRAEIGYWLGKAHQGRGIMTRACRAFIGYG WSDKNLNRIVIMADIENAASRAVPQRLGFTLEGVMREWEVKESGKRDMALYSILRREWTE N >gi|333606977|gb|AFDH01000049.1| GENE 15 11026 - 11715 806 229 aa, chain + ## HITS:1 COG:lin1017 KEGG:ns NR:ns ## COG: lin1017 COG3142 # Protein_GI_number: 16800086 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized protein involved in copper resistance # Organism: Listeria innocua # 2 219 1 221 231 165 43.0 6e-41 MLLEVIATTVGDAIAAEQAGADRLELVTGMKEGGLTPSAGLIEGTVRSVKIPSAVMVRPH SKSFVYDADDVRAMRRDIRLIRETGAAGIVIGTLTPQNEIDVPVLEALLEEAGGLEVVFH RAFDAVPDQIAAFRQLSGYKQITRILTSGGKPSALDAVDRMKELVELSRDSHITILAGSG LNAESLESFVKDTGVTEVHFGGAVRGPKGVEDDIAAEKIREIRDILARC >gi|333606977|gb|AFDH01000049.1| GENE 16 12170 - 12265 136 31 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSTVPTRIYKYAFGALLLTVSLLTAYTNIQP >gi|333606977|gb|AFDH01000049.1| GENE 17 12364 - 13536 1034 390 aa, chain - ## HITS:1 COG:alr0776 KEGG:ns NR:ns ## COG: alr0776 COG0463 # Protein_GI_number: 17228271 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Nostoc sp. PCC 7120 # 9 381 10 394 396 94 27.0 5e-19 MSIAGLFALLILVYWLAMLADHLRGARLFRELPPSGPLPDPPPLVSVIIAAKEEEMTIRE TVRHLLAQTYPRLELIVVNDRSQDGTGRTLDELKRWSEERGDIRIPMRVIHVTRLPGGWL GKNHALYQGYRQARGQWLLFTDADIRFHPDTVREAVGFALSEHADHLTLTPHMTAPTFWL RSFIRHFLFSLSLFTRPWRANLDGERKGGMGIGAFNLIHRRAYEVIGTHEVIALRPDDDL QLGARVKLAGLRQRLASGRSRLQVEWYPSMRAAVRGLEKNLFSGFGYKVSLAAAAGAGQL LLFTFPWLGMLLYGDWRSLVHLASVLIMTALYRKQIRMMAGSPGLDTLAIPASAAVLVYV LVRSVGLALKQGGVYWRGTFYSLTDLKKMK >gi|333606977|gb|AFDH01000049.1| GENE 18 13822 - 14400 570 192 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_5541 NR:ns ## KEGG: GYMC10_5541 # Name: not_defined # Def: sporulation protein YyaC # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 29 187 17 175 179 150 55.0 2e-35 MDHSRNDAEAASLANPSASKASKDGYWKKVSGRQLPAFFSEIREEAGTALPCVFVCIGTD RSTGDALGPLVGSMLAEAGYSVIGTLEHPCDASNLVQRLAEIPAGAPVVGIDACLGQPSS VGLYQVSNRPIFPGKSLGKNLPLVGDYTVAAIVNADGPRQYAVLQTTSLNRVIGMAREIA AAVQAAFPPVRA >gi|333606977|gb|AFDH01000049.1| GENE 19 14736 - 16556 270 606 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 363 581 133 351 398 108 34 4e-23 MRNGFGGGLGERNGGRMPKATLKEVSLRRILGLFRPYRGQLTVIVLLALGGAVLGLVPPL VMKEIIDTAIPQQSFRLLVVFAVLLVALPLLSGMLGVAQNHLNTKVAQGVMRDLRMTLFR NLQRQSMSFFTAARAGEVVQRLTEDIQAVQTVVTSLVVSSITQIVIVITTVGILFALDWH LAIVALIILPAFILPVRKVSGVRKRLRGETQKVRADMSAQLGEIFGVSGAMLTRIFTREK EQEERFGGMNQQVMDLELRLNLIGRWYMMFLGVLGPLGTAVIYMYGGYSVIQGSMSIGGI VAFAAYLGRLYSPVGTLLNLHVEVATALGVFQRIFDYQDMKAEVEEAEGAAELPPVRGSI AVRDVSFAYSPGNTVLSDISFHAEAGEVVALVGPSGAGKSTLISLMARLHDPTEGTVEID GFDVKKVSLSSLRRQIAYVTQESFLFHATVRENLLFAKEDATEEDLVHACRQAYIYDFVQ SLPQGFDTMVGERGHRLSGGERQRLAIARALLKNPRILILDEATSHLDSESEAFVQAALE QLMKDRTTLVIAHRLSTILHADRILVLQKGRIVESGTHKEMMEVDGLYARLYRTQFRGQT NDTMAP >gi|333606977|gb|AFDH01000049.1| GENE 20 16648 - 17103 477 151 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKEFSKTLATMTRPFSFVHKTLSEFGFVRPRTHENQLYVTTFADSITQRVYTLAIPTRLL ENGHTEVYLGHTRFETEELPPSRVVEAAICRMKELADYLNQPNKRPHTVETASNGYMATD SYDIRRLGNEMKKMKTNSELKQTGLIPDPIQ >gi|333606977|gb|AFDH01000049.1| GENE 21 17223 - 17507 319 94 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTPIHHINYRNDHNEVYCCLRNKVVELDDRQKNDFCSGCQMFAGFAGGKGVECEWEDMRE VPNPMQVLDPMKEFISNQIRKIELDDPTVMAHGN >gi|333606977|gb|AFDH01000049.1| GENE 22 17677 - 18738 1266 353 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_0494 NR:ns ## KEGG: GYMC10_0494 # Name: not_defined # Def: copper amine oxidase domain protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 341 1 342 343 237 43.0 7e-61 MNNGMKKGLAVLAVSMAMTTGAAYASPAVVTKTDNLVPISAEVSQSVQVTVNNQVLDAEG YVKAGAKEAMIPLRAVAEAIGMELKWNQEDYSVELSKDRIWTLVKTGEDRYVLNKMYKPL GTAPELVDSKLYVPVSFASEILHGTVTAQGKSVSISFDEKKENVMTKGVVTSIRNADGYK AVQIQGFGTAGLVLNVGDDTVFATDKGDKLTFDQLALGQIVEAEHSMVMTMSLPPQTPTY KITVSGYSADAEKLLGTSGTVEEVRTGDDGSQSLTIKGQGLTEQSQSEIVLRLSDATEVI DKEGVKADKKALVKGAKVIGFYNGAMTKSLPPIGGAVKIVVDVEPEAAAAQAE >gi|333606977|gb|AFDH01000049.1| GENE 23 19026 - 19739 688 237 aa, chain + ## HITS:1 COG:no KEGG:Aaci_0695 NR:ns ## KEGG: Aaci_0695 # Name: not_defined # Def: putative two component transcriptional regulator, winged helix family # Organism: A.acidocaldarius # Pathway: not_defined # 43 221 32 221 227 85 27.0 2e-15 MTIAIYTDDPDMAHVLSYFFNETVCSVHARSELGGLPGPGSGQAILAVGSPDEKDWFRLK RSVKQGTTTYLMIREPMTPLETVYAKEIGVREILMDPVARLKSKAAETPDKLISVLVCPG LYEAAAGSELVYIGEGTYFHPKQFCIKYGSTRTELSEKEAALLSFFVENEGIVVTKHTIA EKLWGGYIQPDGICKVIARMKNKLGPARELISSRQLGGFMYVKERETAEYAVTRLLK >gi|333606977|gb|AFDH01000049.1| GENE 24 19814 - 20947 1323 377 aa, chain - ## HITS:1 COG:no KEGG:Tthe_2662 NR:ns ## KEGG: Tthe_2662 # Name: not_defined # Def: hypothetical protein # Organism: T.thermosaccharolyticum # Pathway: not_defined # 1 371 4 388 390 162 31.0 2e-38 MKLKKMVTSLLLISAFTTTSAFAQTSPGGVKDDLYQKAVQKEVENFVKKAYNPYYTINSI QLSTSDYSVKDNRLTARVNISLNKTLKAKSVDELPYVKGLKSKLNVLKLRKDASSTDAEQ VVNDRMKDLQEYIGTSTDQNDSFRITAPIVNGSPDLKNANLEFLNGLVDWIPADYFIPSN ESSMIENGEEFVTEAVTTNKNFLVKSPAEASLVQPLAAVTYDRIAARDYANKWTSNTTNA SGYDTSKWNPNYAKHTENGGVDCANYVSQSIYAGGIPTDSTWKPESLAWVNTGRNISNGL KQYMVDTKGYFYKTTKATTPAGGFISALNYSHVMFVVANDTVTMQFSAHTNDRLKASFAN FSASDYEFYYIKSAYLK >gi|333606977|gb|AFDH01000049.1| GENE 25 21277 - 22014 552 245 aa, chain - ## HITS:1 COG:STM0777 KEGG:ns NR:ns ## COG: STM0777 COG4714 # Protein_GI_number: 16764141 # Func_class: S Function unknown # Function: Uncharacterized membrane-anchored protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 2 138 162 301 302 82 42.0 1e-15 MKPFYDNDIHSLSWSLLGHDSNNEKFVNYNVNVLTRKGVISVVLVTDPKNLAADRKVLTS SILPKLQVKAGERYEEYNSKTDKLAEYGLSGLILGGAGLAVAKKVGLIGLLLVFLKKFGV ILVAGLAALWRFLRGKKKKAAAAEQAAEARAAEARAAELTAAGSDGPAADATAQDAATAP GPSADPGAPADARTHGGSGADPALEPEHSRSEAAPASESGTGRTPLTDEDSLRKPDRPED PDKSK >gi|333606977|gb|AFDH01000049.1| GENE 26 22011 - 22436 366 141 aa, chain - ## HITS:1 COG:STM0777 KEGG:ns NR:ns ## COG: STM0777 COG4714 # Protein_GI_number: 16764141 # Func_class: S Function unknown # Function: Uncharacterized membrane-anchored protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 2 130 4 147 302 62 30.0 3e-10 MKLPKLITLLTGAALCVSLWTAPASAEETLNWVEGPKKVGLGQIAELDLDKNFVFLNDTD TKKFEQQNDSHVNNREIGSVFPKDENQNWAVIFEYEDTGHVKDDEKDKIDANELLESYKT GTEESNKKEMYPTACSSTAGM >gi|333606977|gb|AFDH01000049.1| GENE 27 22615 - 22896 314 93 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MYIAVNTIEVPNPPQMVEMFRKQAPNMKELQGFLGLEVWTDEQAIKVITKWENKEAFEAY TQSEVFKRSHGGHGGQEMKPKARLSYFEGETLI >gi|333606977|gb|AFDH01000049.1| GENE 28 23083 - 23742 495 219 aa, chain + ## HITS:1 COG:PA4017 KEGG:ns NR:ns ## COG: PA4017 COG0702 # Protein_GI_number: 15599212 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Predicted nucleoside-diphosphate-sugar epimerases # Organism: Pseudomonas aeruginosa # 3 219 6 208 213 124 37.0 1e-28 MKKTAIIAGASGLVGRELISVLIADPGYEKIIVLVRTRIEGRDSESKFHQIVTDWNPEQL EQDLRGELKQADVFCALGTTIKKAGTQEQFREVDYEYPMILGNLAKKYGARQFLVVSAMG AKRDSKFFYSRVKGDLEHGLSKLGLRTLRIFRPSLLLGDREEFRFGEKAGAVAAKAFSFL MAGGLRKYRPIPAQRVAAGMAEAAKQKPESIRIYESHQI >gi|333606977|gb|AFDH01000049.1| GENE 29 23824 - 24591 770 255 aa, chain - ## HITS:1 COG:BH2122 KEGG:ns NR:ns ## COG: BH2122 COG0730 # Protein_GI_number: 15614685 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Bacillus halodurans # 1 250 1 250 259 213 57.0 4e-55 MEALSWEMLLFLIVTGFLAAFVDSVVGGGGLITVPALLFTGLPPALVLGTNKLAGTMCSL TSMTSFLLSGKIHFRLAAALFPLSLVGSMLGALLVHRIPSEFLKPLVVVLLIAVTVYTLL KKNWGAASTFSGLTSRSRFWLAAGAFVIGFYDGFFGPGTGSFLIFLFLLLGFDFVGASAN SKVLNFASNIGALVTFFLVDSVSLAYGIPMGIAMIGGALVGTRFAIRKGASFVKPLFLIM TTVLIGKQLWTLIMS >gi|333606977|gb|AFDH01000049.1| GENE 30 24682 - 25614 780 310 aa, chain - ## HITS:1 COG:BH1917 KEGG:ns NR:ns ## COG: BH1917 COG0726 # Protein_GI_number: 15614480 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted xylanase/chitin deacetylase # Organism: Bacillus halodurans # 94 292 71 270 276 164 43.0 2e-40 MIKISGSVKALPLRRTAAACAICVFFTLAPAPALASGGSHVSSGLTVSAPRAEAVNGLPH RSTASAASIPAEKDPHATAAKPRDRDYYEQRGEIVWEVPSAGKVIALTFDDGPDPVQTVQ ILDELKKYGAKATFFVVGKRAERFPELIKRETAEGHEIGNHTYSHPFLTNNRSTESIRSE IAATQKVIKSINGTAPVLFRPPGGYYHERLVHVSLAEGCLPILWSWHQDTEDWKAPGVNR VVNKVLNNAREGDIVLFHDHVLGSMNTVDAIRKILPELSKRGYHFVTVSELLKLRGSTSG VSKPSGSKTK >gi|333606977|gb|AFDH01000049.1| GENE 31 25747 - 26061 370 104 aa, chain - ## HITS:1 COG:no KEGG:PPSC2_c4510 NR:ns ## KEGG: PPSC2_c4510 # Name: not_defined # Def: protein # Organism: P.polymyxa_SC2 # Pathway: not_defined # 10 104 13 107 107 113 52.0 2e-24 MKNKTNEKHKPQIPSARGIRRSCSRELYRTVKRLKMYISPEKIEEAEKIYTRKVAQHIAF IVEHSDNRKVQADWWEEHVAPEIAVLWDVNADTLSKAFRSAYGG >gi|333606977|gb|AFDH01000049.1| GENE 32 26242 - 26697 549 151 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_4978 NR:ns ## KEGG: Pjdr2_4978 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 1 149 1 147 148 157 49.0 1e-37 MFKSFVLKKYHFVMFLGFLCVAFAAVLFFRNPQILSTAAEPATASERTIQLVTGEFSTKL DNGKEIEAYRWDPGTIVVRKGENIRLSIYGVNGASHPFIIEGLNIKGEVKKGKETVVNFK AEKTGTYRLICMTHTDIAHSGPMIAYINVID >gi|333606977|gb|AFDH01000049.1| GENE 33 27046 - 27190 189 48 aa, chain + ## HITS:1 COG:no KEGG:BCG9842_B0057 NR:ns ## KEGG: BCG9842_B0057 # Name: not_defined # Def: alkaline phosphatase like protein # Organism: B.cereus_G9842 # Pathway: not_defined # 1 47 2 48 197 70 80.0 2e-11 MGEFIHSLLVFFEGLGYWGVMLGLMIEVIPSEIVLSYAGYLVAKGEIG Prediction of potential genes in microbial genomes Time: Sun Jul 17 08:46:03 2011 Seq name: gi|333606916|gb|AFDH01000050.1| Paenibacillus sp. HGF7 contig00155, whole genome shotgun sequence Length of sequence - 69514 bp Number of predicted genes - 59, with homology - 50 Number of transcription units - 31, operones - 14 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 232 - 330 106 ## 2 1 Op 2 . - CDS 372 - 1091 662 ## gi|253577031|ref|ZP_04854354.1| conserved hypothetical protein - Prom 1151 - 1210 6.6 3 2 Tu 1 . - CDS 1238 - 1819 622 ## COG0693 Putative intracellular protease/amidase - Prom 1845 - 1904 3.7 - Term 1929 - 1957 -0.2 4 3 Op 1 . - CDS 1996 - 2694 554 ## COG1335 Amidases related to nicotinamidase - Prom 2715 - 2774 4.1 5 3 Op 2 . - CDS 2776 - 3855 838 ## Bsph_2197 hypothetical protein - Prom 3892 - 3951 4.8 - Term 3905 - 3931 -0.6 6 4 Op 1 . - CDS 3959 - 4315 351 ## Pjdr2_2714 glyoxalase/bleomycin resistance protein/dioxygenase 7 4 Op 2 . - CDS 4338 - 5384 507 ## PPSC2_c3804 hypothetical protein 8 4 Op 3 . - CDS 5411 - 6052 573 ## COG1434 Uncharacterized conserved protein 9 5 Op 1 . - CDS 6225 - 6575 325 ## Pjdr2_2713 glyoxalase/bleomycin resistance protein/dioxygenase 10 5 Op 2 . - CDS 6652 - 7176 570 ## ABC3575 hypothetical protein 11 5 Op 3 . - CDS 7200 - 7931 629 ## COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases - Prom 8071 - 8130 2.2 - Term 8409 - 8439 5.0 12 6 Tu 1 . - CDS 8480 - 10570 2220 ## COG0840 Methyl-accepting chemotaxis protein - Prom 10644 - 10703 5.5 - Term 10706 - 10747 10.6 13 7 Op 1 . - CDS 10933 - 12594 1507 ## Franean1_4401 hypothetical protein 14 7 Op 2 . - CDS 12688 - 16620 2953 ## Franean1_4402 hypothetical protein 15 7 Op 3 . - CDS 16635 - 18986 1859 ## Franean1_4403 hypothetical protein 16 7 Op 4 . - CDS 19001 - 23878 3808 ## MAE_11600 hypothetical protein 17 7 Op 5 . - CDS 23948 - 25327 1283 ## - Prom 25447 - 25506 4.1 - Term 25548 - 25584 4.0 18 8 Tu 1 . - CDS 25628 - 26146 495 ## - Prom 26228 - 26287 6.3 - Term 26249 - 26275 0.3 19 9 Tu 1 . - CDS 26303 - 27004 773 ## COG1191 DNA-directed RNA polymerase specialized sigma subunit + Prom 27277 - 27336 3.1 20 10 Tu 1 . + CDS 27365 - 27967 257 ## Btus_1157 copper amine oxidase domain protein - Term 27964 - 28014 12.2 21 11 Op 1 . - CDS 28091 - 28516 206 ## COG3832 Uncharacterized conserved protein - Prom 28551 - 28610 4.8 22 11 Op 2 . - CDS 28671 - 29363 330 ## - Prom 29600 - 29659 4.7 - Term 29462 - 29507 11.9 23 12 Tu 1 . - CDS 29708 - 29797 76 ## - Prom 29819 - 29878 3.6 24 13 Tu 1 . - CDS 29965 - 30312 73 ## HS_0373 hypothetical protein 25 14 Tu 1 . - CDS 30416 - 31009 187 ## HMPREF0868_0520 hypothetical protein - Prom 31057 - 31116 9.3 26 15 Tu 1 . - CDS 31156 - 32085 863 ## COG1397 ADP-ribosylglycohydrolase - Term 32376 - 32415 8.0 27 16 Op 1 9/0.000 - CDS 32575 - 33462 1024 ## COG1760 L-serine deaminase 28 16 Op 2 . - CDS 33459 - 34139 756 ## COG1760 L-serine deaminase - Prom 34241 - 34300 4.6 29 17 Op 1 . - CDS 34610 - 35680 1095 ## GYMC10_0510 dihydrodipicolinate synthetase 30 17 Op 2 . - CDS 35683 - 36699 1164 ## GYMC10_0509 NAD-dependent epimerase/dehydratase - Prom 36839 - 36898 5.5 31 18 Tu 1 . - CDS 37086 - 37487 231 ## BMD_3678 putative membrane protein YvaD - Prom 37546 - 37605 6.3 + Prom 37473 - 37532 2.4 32 19 Op 1 31/0.000 + CDS 37583 - 38425 1102 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 33 19 Op 2 34/0.000 + CDS 38457 - 39134 752 ## COG0765 ABC-type amino acid transport system, permease component 34 19 Op 3 . + CDS 39144 - 39890 645 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 35 19 Op 4 . + CDS 39979 - 40989 1086 ## COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family + Term 41000 - 41057 18.2 - Term 41471 - 41504 5.2 36 20 Tu 1 . - CDS 41514 - 44036 1933 ## COG0846 NAD-dependent protein deacetylases, SIR2 family - Prom 44146 - 44205 3.7 + Prom 44104 - 44163 1.7 37 21 Tu 1 . + CDS 44270 - 45595 1317 ## COG2270 Permeases of the major facilitator superfamily + Term 45603 - 45631 -0.9 - Term 45639 - 45695 19.5 38 22 Op 1 4/0.000 - CDS 45706 - 47154 1636 ## COG1488 Nicotinic acid phosphoribosyltransferase 39 22 Op 2 . - CDS 47197 - 47748 539 ## COG1335 Amidases related to nicotinamidase - Prom 47789 - 47848 5.5 - Term 47845 - 47878 2.1 40 23 Op 1 . - CDS 47928 - 48353 394 ## 41 23 Op 2 . - CDS 48384 - 49157 805 ## COG4326 Sporulation control protein - Prom 49197 - 49256 4.4 + Prom 49402 - 49461 4.8 42 24 Tu 1 . + CDS 49558 - 49695 82 ## - Term 49447 - 49483 1.5 43 25 Tu 1 . - CDS 49717 - 49980 162 ## - Prom 50144 - 50203 5.7 + Prom 49886 - 49945 1.9 44 26 Tu 1 . + CDS 49970 - 50074 87 ## + Term 50183 - 50228 -0.2 - Term 50171 - 50216 11.2 45 27 Op 1 . - CDS 50235 - 51872 1553 ## COG1472 Beta-glucosidase-related glycosidases 46 27 Op 2 7/0.000 - CDS 51896 - 53521 1487 ## COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain 47 27 Op 3 . - CDS 53491 - 55269 1381 ## COG2972 Predicted signal transduction protein with a C-terminal ATPase domain 48 27 Op 4 38/0.000 - CDS 55290 - 56132 779 ## COG0395 ABC-type sugar transport system, permease component 49 27 Op 5 35/0.000 - CDS 56151 - 57020 647 ## COG1175 ABC-type sugar transport systems, permease components - Term 57042 - 57080 6.0 50 27 Op 6 . - CDS 57121 - 58452 1268 ## COG1653 ABC-type sugar transport system, periplasmic component - Prom 58618 - 58677 6.4 + Prom 58582 - 58641 3.8 51 28 Op 1 38/0.000 + CDS 58819 - 59763 956 ## COG1175 ABC-type sugar transport systems, permease components 52 28 Op 2 14/0.000 + CDS 59760 - 60581 1083 ## COG0395 ABC-type sugar transport system, permease component 53 28 Op 3 . + CDS 60627 - 62012 1525 ## COG1653 ABC-type sugar transport system, periplasmic component + Term 62063 - 62120 14.1 - Term 62060 - 62097 7.8 54 29 Tu 1 . - CDS 62309 - 63220 705 ## COG2199 FOG: GGDEF domain - Prom 63406 - 63465 4.5 - Term 63463 - 63509 9.2 55 30 Op 1 30/0.000 - CDS 63544 - 64959 775 ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 56 30 Op 2 24/0.000 - CDS 64964 - 66301 1525 ## COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes 57 30 Op 3 28/0.000 - CDS 66353 - 67333 1124 ## COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit - Prom 67389 - 67448 4.6 58 30 Op 4 . - CDS 67465 - 68532 1116 ## COG1071 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit - Prom 68678 - 68737 8.1 + Prom 68669 - 68728 7.1 59 31 Tu 1 . + CDS 68760 - 69488 517 ## COG2382 Enterochelin esterase and related enzymes Predicted protein(s) >gi|333606916|gb|AFDH01000050.1| GENE 1 232 - 330 106 32 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRDHIPHLKPQSVSIDKKGSSYSVTLKVEEVQ >gi|333606916|gb|AFDH01000050.1| GENE 2 372 - 1091 662 239 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|253577031|ref|ZP_04854354.1| ## NR: gi|253577031|ref|ZP_04854354.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786 str. D14] conserved hypothetical protein [Paenibacillus sp. oral taxon 786 str. D14] # 28 136 54 158 273 67 34.0 7e-10 MKKKYMTLLGACGLAAVLGATSYASGGVEKIEAYLNPAIKITLNNEAWTPKNGEGSELAP VIIDGTSYVPAKAVVEAMGGQVQWNNDAKTIAITSVPGKDVPVSPPQSGESDRDKQIAQK IAEIKEKLKPGLSREEVAARLQVKLENATDNGDVENGSDSFSKVDYFKEAGYERPEGTPD HVIDYEGLNNKKVGASLFIGWKNDKLHFYSISYVNPADKKVHLFVVGLDGTSEDSPATN >gi|333606916|gb|AFDH01000050.1| GENE 3 1238 - 1819 622 193 aa, chain - ## HITS:1 COG:CC1780 KEGG:ns NR:ns ## COG: CC1780 COG0693 # Protein_GI_number: 16126024 # Func_class: R General function prediction only # Function: Putative intracellular protease/amidase # Organism: Caulobacter vibrioides # 2 183 47 228 267 100 37.0 2e-21 MKIAFVVFDGITFLDFIGFYDVVNRLRLFDKTKGTTWDICALAPEVKDEQGLTIRAGKIK PDLSEYDLLFVPGGLGTRKLRFQKEFVDWLSQAIEVKHVVSVCTGSLLLGAAGFLKNRKA TTHPKAYELLEPYCKEVVRARIVKDGHVVTGGGVSASIDLGLYVVEMLAGREAADQVKEQ IDYPYQQSGMVEV >gi|333606916|gb|AFDH01000050.1| GENE 4 1996 - 2694 554 232 aa, chain - ## HITS:1 COG:mlr7067 KEGG:ns NR:ns ## COG: mlr7067 COG1335 # Protein_GI_number: 13475887 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Amidases related to nicotinamidase # Organism: Mesorhizobium loti # 11 191 17 192 222 75 30.0 6e-14 MSMYIQPNLATCALLTIDTQNDFSLPGAPAEIPGTSEVLPVMGRLLEQCRAHGIPVIHVI RIYERDGSNADLCRKEMIEAGAAIAAPGTWGADLADAIKPPHAEELRFEALLGGEIQAIG EREWVLYKPRWGAFYNTKLENFLKERGIDTLIFTGCNFPNCPRTSMYEASERDFKAIMVE DAVSGVYEKGKEEIGNIGISIYDSASLIRDIGQTFAQIADRPSSDRASSSAS >gi|333606916|gb|AFDH01000050.1| GENE 5 2776 - 3855 838 359 aa, chain - ## HITS:1 COG:no KEGG:Bsph_2197 NR:ns ## KEGG: Bsph_2197 # Name: not_defined # Def: hypothetical protein # Organism: L.sphaericus # Pathway: not_defined # 3 358 1 360 364 294 43.0 4e-78 MMVVKKEARVSGLDLARALSIFGMIVVNYKIAMMADGSGPSWLAGFAGLFEGRASAVFVV LAGIGISLMTRRARRGDKPELAKQKLVLRKRSAYLLALGLFLLALGWTADILHYYALFLF AASFLIRSSDRFLAGAAVTAVLAGQCAQLALDYGAGWDASFHAYTDFWTVGGFIRNLFFN GFHPALPWFSFFVTGMLIGRLDLTDPSVRIKRVTASLIVFALSELISRLALKLSSSAIGE EGARYLFETKPMPPNLLYMVSATSTAVLVIFACIYVTEKAPGQRMLTALVRTGQMALSHY ILHVIAGLGLLEALGVLENGSLPFSVAYSIGYFAAAVGATLLWRRKFSRGPLEALMRKL >gi|333606916|gb|AFDH01000050.1| GENE 6 3959 - 4315 351 118 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_2714 NR:ns ## KEGG: Pjdr2_2714 # Name: not_defined # Def: glyoxalase/bleomycin resistance protein/dioxygenase # Organism: Paenibacillus # Pathway: not_defined # 1 118 1 118 123 163 59.0 2e-39 MTLTGITPILRIFDEKKAKQFYVEFLEFTLDWEQRFEPGMPLYMQISRDEIVLQLSEHYG DCSPGAALRIAVSGVEDLQKALIGKNYPYARPGIELTPWKTKECTVTDPFGNKLIFFE >gi|333606916|gb|AFDH01000050.1| GENE 7 4338 - 5384 507 348 aa, chain - ## HITS:1 COG:no KEGG:PPSC2_c3804 NR:ns ## KEGG: PPSC2_c3804 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa_SC2 # Pathway: not_defined # 26 255 31 254 361 181 37.0 3e-44 MFEVKTKKLGSRLDERIVDTKPLLKSMKFIVVTEKGNLYTLDTVSDSIERICSVQCPEIN FEERVTLAVSVQEEFISVVNTYGKNGVIVDIAQKKVLRPFERDDYHYEQSIFPAVFLEDN NRTLFVHGTKWNRLDITDMHSGESVVPRPDPYSVTDEDGSSEAEHLLDYFHGQLLVSPEG DWIADNGWIWHPTGSVTAWNVKKWLTENVWESEDGESRTTLWWGKYDWNEPICWIGKTKI GIIGRYDPDLLAGEEETPLSEDFFIRILDVRDGKESISFKIAFGDLYYDDYLYCTSAESG FRIYDSGTGEELYANSGLSASAYHPGVRQFLSLIDREITVFTVTEHSQ >gi|333606916|gb|AFDH01000050.1| GENE 8 5411 - 6052 573 213 aa, chain - ## HITS:1 COG:lin2536 KEGG:ns NR:ns ## COG: lin2536 COG1434 # Protein_GI_number: 16801598 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 34 212 10 186 189 116 39.0 4e-26 MMLFCAAVVLLLIIRRIDFSKRVRLRKTLWAGSLLIALSFAVVESFVLSQMGADEAGTSG ADTVVILGSGLKGFEVSLTLQQRLDAALAYVSGKKDITVVVSGGQGPGENVPEAVAMRDY LVKKGIAENRILLESRSTSTRENLRFTKAVLKEKGIHDPQILIVTSDYHMYRAKLLAKRE GYEAYGLSSPSPAHLKPINMIREYFAMIKTWVS >gi|333606916|gb|AFDH01000050.1| GENE 9 6225 - 6575 325 116 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_2713 NR:ns ## KEGG: Pjdr2_2713 # Name: not_defined # Def: glyoxalase/bleomycin resistance protein/dioxygenase # Organism: Paenibacillus # Pathway: not_defined # 3 116 2 115 115 167 64.0 9e-41 MNSPIQNKILTVFIPVSDIEQAASWYCKILGLPADGEVLFGHLYILPMQGAGIVLDSKIY SPETVFKAPVVQFATDDIEQSYAYMKSLGVRLVSDIEHGHWFNFTDPDGNLLMVCK >gi|333606916|gb|AFDH01000050.1| GENE 10 6652 - 7176 570 174 aa, chain - ## HITS:1 COG:no KEGG:ABC3575 NR:ns ## KEGG: ABC3575 # Name: not_defined # Def: hypothetical protein # Organism: B.clausii # Pathway: not_defined # 1 172 5 176 177 178 52.0 9e-44 MDDYLSLNAVVWLFLAAFMIHDFEEIIFVESWMNRNYARLRPRVPGPGQKLFKDMSNVKS SQFAVAVFVEFILFIPVTYLAAERGIWALFIGFNALLFVHVFTHLGQSVLLRSYTPGVVT AVAVSLPYSVYLFYRLLRDGAATWQDLLTCAPLGLLLLPVVLAGHKLGKKVVPD >gi|333606916|gb|AFDH01000050.1| GENE 11 7200 - 7931 629 243 aa, chain - ## HITS:1 COG:DR2233 KEGG:ns NR:ns ## COG: DR2233 COG0639 # Protein_GI_number: 15807225 # Func_class: T Signal transduction mechanisms # Function: Diadenosine tetraphosphatase and related serine/threonine protein phosphatases # Organism: Deinococcus radiodurans # 1 239 5 240 248 156 38.0 3e-38 MDKIAILSDIHGNIPALEAVLEDIRRKDITRIFCLGDLIGKGPHGDKAVDLIREHCEEVV SGNWDDFITRETEIEDLKWHQNVLGKERLEYLAGLPFSLEFYMSGKYVRLFHASPRSLYE RVQPWDELEKRLSLFESSDKCREQIPADIVGYGDIHNAYLQHLYGKVLFNVGSVGNPLDL TQASYVVLEGSFDSPTAAPLEIRFVRVPYDIERSVSQAVESGMPALDAYIKELRTARYRG IKD >gi|333606916|gb|AFDH01000050.1| GENE 12 8480 - 10570 2220 696 aa, chain - ## HITS:1 COG:CAC3476 KEGG:ns NR:ns ## COG: CAC3476 COG0840 # Protein_GI_number: 15896714 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Methyl-accepting chemotaxis protein # Organism: Clostridium acetobutylicum # 322 696 207 582 582 243 37.0 8e-64 MLKSKAKQTRGILGKINLTGLFAKIMLISVACMTIPMLIALWFASSSSADSLEAEARESM TNIVSEKVNQMDLAFTNLSLSSSTMANNPFLVNTFKEIKKTGNPKSENAATTSAYLGKLI TDANGLYENIYAAYNSAIVSDGIGGQSVGIDIGVADLDKSLLEGMKKGPVLYGPVESPVT GGPIMALLAHIPDGSTDAMPSIVGTAVDLTKLSANIVKSTEKGNVKTFMINAAGVLVASE NGKEVLKYDMTKAEGDVPAFFKEVSANKKGIGYFTLNGQQQIASYAKSSLQDMFIISFKP VDEYMHNVTALKKGLVIVIIGSILVFAAILVLLSYRITTPIKVATGHLKVIAGGDFSHPV PQKYMKSKDETGVLMQSMHTMQASISDTIRTVVEESDKLGSSVTAVSSHLTDLNGQIQNV SGTTQQMAAAMEETAASTEEMNHSSSSIRQSVDRIADKAKQGEEASKEVSKRAEDLRETA VASSERAVEIGRQMRESLESAIEQAKAVEQIQVLANSILEITAQTNLLALNANIEAARAG EAGRGFAVVAGEIRKLAEVSGHSANKIREVVQIVTSSVQNLKANSESMLTFIDTTVINDY NAMVETGQQYYQDAEFYEKLLGDFNATAHELSRAIEDMALMINEISIANNESAAGTGSIS DQASVAMDSSDKVLNIVEGTRESAEQLKQTIANFKI >gi|333606916|gb|AFDH01000050.1| GENE 13 10933 - 12594 1507 553 aa, chain - ## HITS:1 COG:no KEGG:Franean1_4401 NR:ns ## KEGG: Franean1_4401 # Name: not_defined # Def: hypothetical protein # Organism: Frankia_EAN1pec # Pathway: not_defined # 14 507 9 516 566 163 30.0 2e-38 MEVQTMSKADLPALLNYSILTSPSPLQASTQTYSASGTVTLVVTPPPGKEVYCPEIDLYI PSGVLSQKDIFDPGVNTDKWQYAVGKIVQGSEVGLADISYIPLKFTAKSSQDYLINYPLI LTVGVGSVSAALGDIRNLHILETSSSFSGDYQPRDLPFGLTIGLPEIFVRNFVAGAYDSS KPDIVPGGSFANGQAFKLSWEGNASQYQIVTTAGTAPLYSGTDNSFVVTKGLSQTTTFIL IASRTDGVRGETLYVYEAVTVHITNPDETPNTVSAAGNIATAAGLNGKTLQVSGSASLNG GADVTGTLNVTGMLNAKSALNVTGTATMSGGTVTGLLTVQGSASLGSSLVQGALTVGGGS NLSDTTVKGALSAAGSVGILGYNQRISTGTHMAGTDGFVIGYVHLPWKQVLSVGWIYGGT DGYMVQTTGGNTGGFTGNWTKYNYSNPNTFMFPVRRGASYWVGESFFKDNEVNPSTVYYF VPLGSGSSGEEATVKISDEIPEDIVLPYDGLEKTNGAERAERVELLTRLLEEILEKPIGE DKKKALIDVLGTL >gi|333606916|gb|AFDH01000050.1| GENE 14 12688 - 16620 2953 1310 aa, chain - ## HITS:1 COG:no KEGG:Franean1_4402 NR:ns ## KEGG: Franean1_4402 # Name: not_defined # Def: hypothetical protein # Organism: Frankia_EAN1pec # Pathway: not_defined # 6 1283 6 1244 1254 595 35.0 1e-168 MDNSTLLVPVEVSALAVNAYVWANQPFRRWEHNYTQVKSFGSSEPDPTDRGGGFAGNPDD HTGVYVHWTLPDALKHGVQDPVTRRVEFPLVPNRWLVVRFGGTSAGRVSKAYLVESDAPG GAGSAAYVFDPAVIEAWKGSKDPVRQQAGGRLGGSGRQIADVLGQVFDLSGWSEKGIEQL FVKAVAPGNPLFSAFQSHCSQVFSFRDPLDDAEPECAVSYLVAGWYSNHAEDPLQKCQSA KPSGSSPVDAYKRQLAEFSWTVQKAASAGPADGSAVPDGDVPQASLYHGMVLGVKWSRSG VLPTVKDKYKDPAGKGIHVAVGNTSADAFKAMIERQLNDRAKNGDVKAQQLLAKMPNAAG LLEAFQYDMLHILDQPSGWDLLDLRIRQEWFGSKPGGYRWTVVDAKSDRPDNLGERPPEQ WLTALNGTQAALDEKLNELKAARRRLYDTWWKRGKYESYPVFARPDGLTEDQFAKALSAE NDPSYDPSKPEGPDNIASLPRKIMDLIGEAGSLIGQGVPRPAEGEGQTPEEALAAGIEAF ERAKRAQGELNADRSLKPVAGPRYWRANDPVVFISGAGSTGRISGPDSSLSCRLSAQIVG GITIGTDSVTADELAAALPKLPLSLPELASALQGDYIPPDTALQLAGAVGLLLAEFFLLD PDNAPVISAGHPGITREIIAGHDPARFQGILPAFVPGDWQQPWNPLLLKWVADWYPIGHS NWTFDGTDYRYDGKASGSNDRQIGGDILLTPQTSFLFRDRLKKLVHTRQGEAEDTDEGLL DQLDGLIEDIDGWDFISQSLGGFGSQLAVRDTRVNRSPDPGLTFTFKDGGQKTLADLVGD EYHDLPYIRSTGDTLEFQGVRQGQFAFAYLAVYDAFGQVLEVIGDSGLSRSDVFEPILSE GLAPDAPIEAQNAQRFIQLPPRPNQHIRLDFRLIDARDAGRFADLDSLANPVAGWLLPNH LNGSVSVYDAQGGAVGDVGLITGKDGVKRVHLLYAPLGTYGNLADIEKRAPELAKMLQSL TAADEVAFSRFLEAIDASLWTIDPLAASSDRNVSVLAGRPLALVRANLKLALDGPAARYT GWAATFNPPPSDFTGNDYEVRLGDTEIRKDGLIGYFLNGAYDRFNSVHPLAAGEEAAGYV RPIGPGNFFSLRFDGARQAEVMLLLDPRAAVHAVTGIVPVQALELPARFTDPVLSALNLQ FRTGPILTVLQPAPDKTAGGENGPSGVITLPVPSDNGGQWKWLEPQSREDGPSAFLTYTL TEIGQQARLNSRSLSLREGTLQFRSGFAQGTGTGPSEPGKRDTSESESEG >gi|333606916|gb|AFDH01000050.1| GENE 15 16635 - 18986 1859 783 aa, chain - ## HITS:1 COG:no KEGG:Franean1_4403 NR:ns ## KEGG: Franean1_4403 # Name: not_defined # Def: hypothetical protein # Organism: Frankia_EAN1pec # Pathway: not_defined # 8 774 12 783 788 458 40.0 1e-127 MSDEPQQGQIRFYDHDLPGLPAGNYKVTVKQSVQDIGITAQEQALLMAEQPFIVHAPQFA IDPSEIHSLVPPAGSTGKFADELPHLVLNTRVLPWEREMSGPNIPWLALLLFQEEELLAG PADRTDAETLAIRSTAGEFMGLKNSPDVYVPQTLVREADVTEGQTCFYIQMDAGVFQSII PQLNELPYLTHVRQVNTQDKAAGHEEDGWYSVVTGNRFPYAQETDEGGSRNIVHLVSLEK FDDLLQPGAKPPKEKIALLSLARWTFRCRPDSKEDFAGLMHRLVAEEMSGAAYDPGALLL RLPQGAADGGEERTAPPDDAAGAEARKRLRSGYVPLPFHIRSGEDTFAWYRGPLAPVRPA SFLPAEPLLTADAALIYDKANGLFDASLAAAWQIGRSLALSDATFGSLLLDYRRRCHRLT DLLYHRLEASGLTDAADLKELAQSGLMREALLGAMKGDLLEQIPEPPLYGLPQDSPQQNL SARRQLLQEGSGVSPVAALQQFLAGDEVKEAVAELTRDDLEPIALWLAYKLLLYDVPFYY LVPEERMLPSESIRFFYLDSNWLDAMLDGMLAIAMHSSRDSFTYGMTKGTIRAAAEAAAQ TVRTRPGDGRSAAPGGEALPLAGFLLRSAAVAGWPGLAVRAFDAVGLPLGIARLERLSSS VLLALFRGIPDRIELSEPQEGFQFGLNEEGEINLRSVLPDRSGSPFGSELNVHLSVRDRH LRPGRVLDLRPDQADGLVQQSADAIKQALKLDQLTLNPSDFALQIVKSPERIVFQPGMTV KPQ >gi|333606916|gb|AFDH01000050.1| GENE 16 19001 - 23878 3808 1625 aa, chain - ## HITS:1 COG:no KEGG:MAE_11600 NR:ns ## KEGG: MAE_11600 # Name: not_defined # Def: hypothetical protein # Organism: M.aeruginosa # Pathway: not_defined # 451 1317 25 854 1076 513 37.0 1e-143 MSFLSDLQTMYEAGSGTLTLDTAKLGPTGEKLRQLTGSGTLTVTGVRTAPAESGGIITFE GAGLQLAGSPARMFFSAKKTASVHGAVYGADSEPVLVLSVFVTPDWRFGDALPWLTNTFW QDLALKPGTDGTAPRWLIAAGKAAEPELNLDMDGAVYFYGALDETKGLLQEADWVIGVGP LAFGPAVLRDTGAPGLSLDLKLPDDGGGLSGLFQAMKVPVDARLVHDPAAASAPSGLEIT ATIQWNGQPVRITSLILPAGGGIAELSLEGPVDLPSPDDIAHWFGGVSITEYLPPSFESM LASVKIGRLALGIGLGSRSVEYVKATLTALEDKPLTIVPNWVEIGDIEAAVAVRNPFDHP SASYKMSGILDIGGVDLLVSANLVPSPRIPDLSVVVRMEPWSEIDLTMIAAKFGLPTGAY KIAVEEFQMGGSTAGTYFIRAGLAQHPLGTGPNTFVMNNLVFELDYDGQPSFNLEGTMTI AGVDARLSLEAGSGDTSGGTSRGGWNIVVQAGKENPIPMGELLDDLAAKFDVGIPAPIRG MTLKNLELKYASSDSGNSFFFTVESDFKVNSVPVALTLSIRVVSNQTGTGDPAGARYEAF FGGQIVIGSLEFDLLFDRQDLTSQTFIATYSRKSGSPPAVSIRDLVASLSPELAAEIPQS LAIDLRDVKFIFYKDEKESKFALGLDLDAHVSLTDLPLIGKELPADDTIAVQQLQILYAS APFTPVQAGQINKLLPESVHPLPSGVEAGLTAGADLRFGGTPQTLSFALIPGGGQKQPAL REPLAAEASGQQDPANPDAWESPAAYESVSAPSGGPPVPAFSSVSSTSPASSAKWFLVQK TFGPVSITRLGIGYGDGTLWFMLDGSLTSSGLTISLAGMGFGSPLDRFELKFQLLGIGVD YTQAPLEIGGSFMEVVPPPEGARFMYDGAATIRTADFALEALGSYAQMLDGQPSLFVFAN VDTPLGGPPALFVTGLSAGFGYNRDVNMPAPEEVFEFPLLALTRDTGPKLSMNDVMAQLE GTQEYAPGKKRAWIRPQTGEYWLAVGVDFWSYELLHTRALLIAKFGRELELALLGLSSIR LPQAGNTMYAYAELQLEADWKPSAGFFGLTALLTPNSFLIDPNCHLTGGFAFYLWYEGER EGQFVVTFGGYHPSFKPPSFYPAVPRIGFNWAVSDYVNIHGEAYFALTPAAVMAGGGLEV LFHDGDLKAWFTARADLLITFHPFHFQAGISVSIGASYRLDLLFVTKTISVELGASVELW GPPTGGKAHVHWWVISFTVGFGADRSDGDESPIEWGEFKSLLPSLDNVCKITAVAGLTGS LSPGASGTALKSDSEDAAGSGEGDMAVPPVQTSQPSQSSEPSQLHEAFLPSQPYELSQPS QPSQTSELSDPAGPSPSGPGPDIWLVRAGSFSFTTQTAIPASHFTAGQATNPVTDPKYPE AYPVHIRTMNKTNVSSKHHLTVEKDGLDHDISGWQLVPYYRNMPTALWGEPLKDADGRFM RNPQVPGSDTTRNTPAGLTVTPPGSKLGYSAAGLQADLLAYDDVVPQGRLPFEPGGAANT DYAPVPADTTPGDIAGVMGPSAANRAAIFAALQGMQAYSGTNGPLPRLAEEAGDLFTDSP MQVKP >gi|333606916|gb|AFDH01000050.1| GENE 17 23948 - 25327 1283 459 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNDTSFVEYVARVIQMTESDVVGIMELVGWLGNEIKDTLVTCLNNLEKKKNNGKGSGITW TGEASEMTPARPNEQYVFLWKSGLFSRQASLLWNVVGETMFDTYFKTYKVSKSDQELFWK SLFKNGWLDAAFMIPYKKFELMLKNYKLLDLTKKAPTIALTDAQKKDIVDLLLAESPEAF PLRGSRPPFVLRALTSGTNVDLTLVLYHAPGPGDSLPIIASNQLNPTVENAAVGVIMGDF NVNATDAAKQWALNYFDMSLGRLQYVRDAQNAYIYAHPFQRITGPDFPKPASDPALSTVL NYGKRLWNSKTSLTSILVNPSTTVASPTNIESVLSSEYDKFFVKAPKADPSAAFVVNLMD AMIPKSVQIGVQPGGTPIMETRSTTTASYSPELGSLAQTIYNNWWDRQNAKQRKSKAVTD MLNAAPKLAGPPSSLFEAHYVYHYAISDHLPIRMELQYV >gi|333606916|gb|AFDH01000050.1| GENE 18 25628 - 26146 495 172 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MEPYVRELKVNNEREVYEGDYGGAGISGFGGWLIVFSIGLILTFISAVYSLVDYLWPMYE SGEAAAYFSDYPALGTAILVETVSHLFYAVVPVVLGYLCYKRKRLFKTMSIIFLLVSLAL SGLAYLAYSFVSEAAPDFMDGALRDLIKTGITCVIWTLYFIKSERVRNTYTA >gi|333606916|gb|AFDH01000050.1| GENE 19 26303 - 27004 773 233 aa, chain - ## HITS:1 COG:BH1285 KEGG:ns NR:ns ## COG: BH1285 COG1191 # Protein_GI_number: 15613848 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit # Organism: Bacillus halodurans # 1 230 1 229 235 317 74.0 2e-86 MPGLFSAIAFFIKELTLLVSYVKNNAFPQPLTEAEESKYLQKMAEGDAHARNLLIEHNLR LVAHIVKKFDNTGEDLEDLISIGTIGLIKAIESFSPTKGTKLATFAARCIENEILMHLRS LKKTRKDVSLHDPIGTDKEGNEITLIDILGTEADDVVDKVQLKIEKSKIYRNLDILDERE KEVVVGRFGLEHGGEERTQREIAKELGISRSYVSRIEKRALMKLYHEFYKAKR >gi|333606916|gb|AFDH01000050.1| GENE 20 27365 - 27967 257 200 aa, chain + ## HITS:1 COG:no KEGG:Btus_1157 NR:ns ## KEGG: Btus_1157 # Name: not_defined # Def: copper amine oxidase domain protein # Organism: B.tusciae # Pathway: not_defined # 1 85 1 87 239 65 36.0 2e-09 MKKKIIMLVAAFSVFAGVVSASSINGVYKGNAIVKVTVNGNEVKSEVPGINLDGTTMLPV RAVSEALGAEVKWDQNTYTAEIESSPTFKSLDEIARHLKNYNIHSVDYHTDGSGHTEFIA IYEGVFFMGNENEYNEAVKEIAKQAITLGTTDFIFADMLNQSIAGTTENARAFYNGKLTE TQFLDTLIREDIEEESELDS >gi|333606916|gb|AFDH01000050.1| GENE 21 28091 - 28516 206 141 aa, chain - ## HITS:1 COG:CAC3690 KEGG:ns NR:ns ## COG: CAC3690 COG3832 # Protein_GI_number: 15896922 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Clostridium acetobutylicum # 5 139 8 142 151 168 57.0 3e-42 METGDKVTITVEATVHAPVEKVWEYWTEPQHITKWSFASDDWHAPKAENDLRAGGKFLTR MEAKDGSFGFEFGGEYDEVRINELISYTLGDGRKVTITFIDQENNTKVIEAFEAEAANSV EMQKAGWQAILDNFKKYSESV >gi|333606916|gb|AFDH01000050.1| GENE 22 28671 - 29363 330 230 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MWNSIGMLSLLGCVVLFVWAVVAVIRKNGKAKKIFMGSGACFVLMIVGAVNAGPEKPLNV PVSTPAGAKAPSADQTSVVAPEQGTQQGGASADENREEDADTDTTVIVPYKSAKPTVTPR PTLTPKPTAKVSPSPSASPTVKPAATNTSKPTASPTAKPGTTLSPKPTATPSPKPGVSAS PKPAATQKPTPKPTSKPETATAKPTPTPAAKPSTPSPPSTPKPTPKTSKG >gi|333606916|gb|AFDH01000050.1| GENE 23 29708 - 29797 76 29 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKENRIWQKISDLILKRECFVPILQILKA >gi|333606916|gb|AFDH01000050.1| GENE 24 29965 - 30312 73 115 aa, chain - ## HITS:1 COG:no KEGG:HS_0373 NR:ns ## KEGG: HS_0373 # Name: not_defined # Def: hypothetical protein # Organism: H.somnus # Pathway: not_defined # 1 115 1 115 115 132 54.0 3e-30 MKIFSTAPEGNELAQYVGVDYIKFSISTIESVTDWMKKNDNMAQPLLANIDLLLMISHKY TTDANLLLEKRKIQEWKQVFNDWFARCESKIPAKYREGIKENGDELFKELEQYGH >gi|333606916|gb|AFDH01000050.1| GENE 25 30416 - 31009 187 197 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0868_0520 NR:ns ## KEGG: HMPREF0868_0520 # Name: not_defined # Def: hypothetical protein # Organism: Clostridiales_BVAB3 # Pathway: not_defined # 4 196 10 202 202 144 43.0 2e-33 MDTKKNIENISLLKEKLSDWHKLSDEELFLAVKEFEKTPRLEVSIYYQDLFNDPKFSKTL LDIYNKHKDNTKLVVLLVSAIGNMIQRYDLPETKEIYEFMLENCDKSKIGPYVAIFLSRL KHFENYDKKWAYFMNIKKMSPKKVAESSFETIMDLYLEKIPEPYKNEAIEYFNKKVEESN NEYGKQYYQDIINKIKS >gi|333606916|gb|AFDH01000050.1| GENE 26 31156 - 32085 863 309 aa, chain - ## HITS:1 COG:CAC0339 KEGG:ns NR:ns ## COG: CAC0339 COG1397 # Protein_GI_number: 15893631 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ADP-ribosylglycohydrolase # Organism: Clostridium acetobutylicum # 6 303 24 325 341 142 30.0 7e-34 MEFTLDRFHGCLAGLAAGDALGTAVEFSRPGTFEPLRDMVGGGVFGLRPGQWTDDTSMAL CLAESLLETDGFDPADQMSRYVSWFREGYMSSTGTCFDIGNATREALLLFERTGEPFSGS NDPYSAGNGSIMRLAPVPMFYAADPAAAVRFAVQSSRTTHGTAECLQACGLLACYLLAGL RGWSKAELLAPDAYREWMGAAGLELSDGLAEILAGSYRRKEPPAIKGSGYVVQSLEAALW AFDKSSNFEDGALLAVNLGDDADTTGAVYGQIAGAYYGYDGIPEPWREKLAMRGKIEKTA RKLLDLQRA >gi|333606916|gb|AFDH01000050.1| GENE 27 32575 - 33462 1024 295 aa, chain - ## HITS:1 COG:BH2496 KEGG:ns NR:ns ## COG: BH2496 COG1760 # Protein_GI_number: 15615059 # Func_class: E Amino acid transport and metabolism # Function: L-serine deaminase # Organism: Bacillus halodurans # 3 284 2 283 295 253 49.0 4e-67 MRFRTLKELADICTAENKSISEFMLEEQAKESGRSTEQEFGKMADYYKIMKEAVQKGLTE DTTSRSGLTGMDAQRVMSYMSGSVPSVGEEACRAMAYALAVSEVNASMGRIIATPTAGSC GIIPGVFVSAQQRFGWDDDHLVTGLFSAGAIGYIIANNSFVSGAEGGCQAEVGSAIGMAA GAMVELRGGTPAQAVHAVGLALKNTLGLICDPVGGLVEIPCIVRNGFGAVNALAAADMAL AGVRSAIPSDEVIQVMYEAGSAMPEKYRETAKGGLAQTPTGKKMMQELKLSRKRT >gi|333606916|gb|AFDH01000050.1| GENE 28 33459 - 34139 756 226 aa, chain - ## HITS:1 COG:BH2497 KEGG:ns NR:ns ## COG: BH2497 COG1760 # Protein_GI_number: 15615060 # Func_class: E Amino acid transport and metabolism # Function: L-serine deaminase # Organism: Bacillus halodurans # 1 212 1 212 220 234 53.0 7e-62 MRFKDVFSIIGPSMIGPSSSHTAGAIRLGRVARQLFGQQPDKAELTFYGSFADTYRGHGT DLAIVGGLLDYETDNSRIPDSLEDAEAAGVEIVFHTSKGLTVHPNTAKIVLYAGGQEMSM VGASIGGGNIEILGINQFDLKFTGEFPTLVVSHHDRPGMIADITAILQKHHVNIGYMDLD RKGRNGDAMTVIEADSVITDDLIGEILQLSEVDGVKIVDLKERGQS >gi|333606916|gb|AFDH01000050.1| GENE 29 34610 - 35680 1095 356 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_0510 NR:ns ## KEGG: GYMC10_0510 # Name: not_defined # Def: dihydrodipicolinate synthetase # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 356 5 360 360 565 73.0 1e-159 MAARKNLSPDMLAALHDGVAIPAHPLALDENRQFDEKRQRALTRYYIASGAGGIAVGVHS TQFEIRDEEVGLLEPVLRLAAEEVEKADLRRPFFKIAGICGPTEQAVREAELAVKLGYDI GLLSMGGLTGYDEAQILERTHAVAEVIPVFGFYLQPSVGGRIFSFDFWRQFADIPGVVAI KMAPFNRYQTIDVVRAVCCSERRDEIALYTGNDDNIVTDLLTTYRFQANGQTVEKKIVGG LLGHWAVWTHKAVELLEAVKKVRDNRDIPAEWLTRNLEVTDANAAFFDPAHHFEGCIPGI HEVLRRQGLLQGRWCLNPNEELSPGQMEEIDRVYRDYPHLNDDAFVKAHLSEWLAD >gi|333606916|gb|AFDH01000050.1| GENE 30 35683 - 36699 1164 338 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_0509 NR:ns ## KEGG: GYMC10_0509 # Name: not_defined # Def: NAD-dependent epimerase/dehydratase # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 338 1 338 338 479 65.0 1e-133 MKTVQELEAKLAQPSEALINDMANLEGDIMLLGIGGKMGPSLARLAMNAIKEAGVDKKVY GASRFSSGGLREELEGDGVKTFAVDLLDDEQLRGLPDVKNIIYMAGNKFGTTGNEHFTWA MNSYLPGRVAEKYRDSRIVVFSTGNVYPITPVHQGGATESTPPASVGEYGQSSLGRERVF TYFSHKYNIPMAIYRLNYAIDMRYGVLLEIAKSVKAGKPIDITMGHANVIWQGDANEIAI RCLNHCSTPPAVFNVTGPETLSLRWVANEFGSRLGVEPIFEGSESDTALLSNSSKASQTF GYPKVSVLQMIDWIAEWVEADGHTWNKPTHFQEREGKF >gi|333606916|gb|AFDH01000050.1| GENE 31 37086 - 37487 231 133 aa, chain - ## HITS:1 COG:no KEGG:BMD_3678 NR:ns ## KEGG: BMD_3678 # Name: yvaD # Def: putative membrane protein YvaD # Organism: B.megaterium_DSM319 # Pathway: not_defined # 10 126 8 124 128 150 68.0 1e-35 MHHERVEAVFFVTDIGFIVYWLVTFFHLLPDSALFKDYDNPVIVAWNWSFFPLDLLISFT GLFSIYLQRNKRAAWRSWALVSLVLTFCSGLQAIAFWGFSGDFDAAWWAFNLYLMIYPLF FLRHFIAREPSST >gi|333606916|gb|AFDH01000050.1| GENE 32 37583 - 38425 1102 280 aa, chain + ## HITS:1 COG:CAC3325 KEGG:ns NR:ns ## COG: CAC3325 COG0834 # Protein_GI_number: 15896568 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Clostridium acetobutylicum # 5 280 2 269 269 304 60.0 2e-82 MKSFRKSGIALTAVFACTLLLAGCGKTATPAPSPSPSPGAATPSAGAGTLDAVKSAGKIR IGTEGTYAPFTFHDKSGKLTGFDVELAEEVAKRLGVQAEFQETNWNGMLAGLDAKRFDLV ANEVSIREDRKEKYDFSDPYIVSKAVLIVREDNKDITKLEDLKGKKSGQSLTSNLADIAK KNGAEIVAIEGFNQAIELLISKRIDATINDNLSYLDFKKQKPDAPIKVVAETTEASRSAF LFNKNNNDLVKAVNEALASMKQDGTYLNISNKWFGTDVSK >gi|333606916|gb|AFDH01000050.1| GENE 33 38457 - 39134 752 225 aa, chain + ## HITS:1 COG:SMc03893 KEGG:ns NR:ns ## COG: SMc03893 COG0765 # Protein_GI_number: 15967029 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Sinorhizobium meliloti # 9 224 5 220 226 228 62.0 6e-60 MSERSERLLQIFMESLWPMLKAGLQYTVTLTLISFALGLALAFATALARLSRWRLLAGIA AFYVWIIRGTPLLVQLFIIYYGLPSLGWTIDAFPAAVLAFTLSVGAYNSEIIRAAILSIS RGQWEAAYSIGMTRRQALRRIVLPQAARVSVPPLSNSFISLVKDSSLAATITLTELFQIA QQRTAVYYEPMLLYCEAALLYLLFSTVLTYAQRLMERRFDRYAAR >gi|333606916|gb|AFDH01000050.1| GENE 34 39144 - 39890 645 248 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 245 1 242 245 253 50 3e-66 MIELSHLKKQFQSQEVLRCISLNVARGETVVVIGPSGSGKTTLLRCINLLEVPDAGSLRI GDAGLDFTGGRKPSSQDILTLRRQTGMVFQSYELFPHMTALANVMEGPVTVQGKRAAEAR DRAQELLAKVGLADKAGLYPHQLSGGQQQRVGIARAMAMNPLVLLFDEPTSALDPELVGD VLEVIRQLAREGMTMVIVTHEMKFARDVADRIVFVDGGVIVEEGSPAKVLDSPSHERTRR FLHRISGG >gi|333606916|gb|AFDH01000050.1| GENE 35 39979 - 40989 1086 336 aa, chain + ## HITS:1 COG:BH1481 KEGG:ns NR:ns ## COG: BH1481 COG1902 # Protein_GI_number: 15614044 # Func_class: C Energy production and conversion # Function: NADH:flavin oxidoreductases, Old Yellow Enzyme family # Organism: Bacillus halodurans # 2 336 4 337 338 448 65.0 1e-126 MKLFEPFTIRNVTLPNRIVMSPMCMYSCENRDGKVTDWHRTHYSSRAVGGTGLLILEASA VTEQGRISPQDLGIWSDGHVEGLRELVGLIRSHGSKAGIQIAHAGRKAELDGPIVAPSAI PFPGGKTPEEMTPEQISQTVRAFADAARRAKAAGFDVIEIHGAHGYLINEFLSPLSNHRT DEYGGSRQNRYRFLQEIINAVKEQWDGPLFVRVSADEYDPNGNSIQDYAFFASLMKEQGV DLIDCSSGGVVPAKIDVYPGYQVSLADQIKNTAVIPTGAVGLITGGKQAEDILERGQADL IFIGRELLRDPYWPRTAARELGVEPAFAPKQYTRAW >gi|333606916|gb|AFDH01000050.1| GENE 36 41514 - 44036 1933 840 aa, chain - ## HITS:1 COG:CAC0284 KEGG:ns NR:ns ## COG: CAC0284 COG0846 # Protein_GI_number: 15893576 # Func_class: K Transcription # Function: NAD-dependent protein deacetylases, SIR2 family # Organism: Clostridium acetobutylicum # 14 245 10 241 245 285 56.0 2e-76 MSDLPSNENHTENLRRLIDESERIVFFGGAGTSTESGIPDFRSSSGLYNSGAEYDYPPEV MLSRSFFIREPEKFYAFYRGEMLHPAARPNPAHLALAELERSGKLTAVITQNIDGLHQLA GSKRVLELHGSVLRNKCLSCGEGYGLDAVMESIETVPRCTVCGGIIKPDVVLYEEGLDAH VLGEAAAQIAAADLLIVGGTSLTVQPAAGMVGRFHGGRLALINLDPTPYDSHASCIIREP IGKVLAPFAEKKGLNGFFEKRRTDSGRNPAGPAANFIRQSGRWLAVEPDGTGLQCQRRHD SMRRGLDIAGYAFSRLGKRGSLTEGAGKRKAQSDVARAEILNEGGGRKDLWPNGVYAGAK GALRTGAAALLIGGILFAAGPARQALADDAVTSGSRQVSAGGKSFAVKWVRVDVTDPYLE VVPVSASRGIGYDESFSSMIARTGAVAAVNGTFFNAYEKDASIRYPNGLMLKDGELLHSG ENQSLIVDADKTVDIRKLKMSYTITATHGGKDYTFSPWGTNKDYGDSQPDQVVWFTPEYK AAVSKSGTTKVVVRDGVITAITGDAVYVPYDGYVCLIGNSSNNKSNLLPHLHVGDTVTTK LEVTENGQRVQGAELWQSATGVGPKLVTGGKVDIDPARDGFTDPKITKQAAMRSFVGADA QGRLVMGTVNGATMNDLAQIALSMGLTDAMNLDGGASSGLYANGSMLTAPGRALSNALVV KRHATPQVQVAVNGQLSAGFKGFVGGETTMVPMRPLLNAMNTEYKWDNAAHSLTLKKGDV EMVMTVGSYYIRVNGTDYWVPAAPQLLDNYLYVPLRFTAEKIGAEVKWDQRLYRADIVLP >gi|333606916|gb|AFDH01000050.1| GENE 37 44270 - 45595 1317 441 aa, chain + ## HITS:1 COG:CAC1585 KEGG:ns NR:ns ## COG: CAC1585 COG2270 # Protein_GI_number: 15894863 # Func_class: R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Clostridium acetobutylicum # 21 440 4 416 425 149 26.0 8e-36 MSQTNPVTPAPLPAKGRKLFLSRPVLSWGLNDLANTIFSSNIVTLFFPFYLTQVIGGDAR MDQVASTFITYTNALSGLLIVLLSPLYGVWMDRTGRKKGLMVPFTLLAIGFTLLMALSAN WQSSASFLGLPLAVAGVLFFFVIAKFFFSSSVVFYDAMISDLGNSREIPLISGFGVALGY IGTLIGLSVYPLASGQQYEQTFLPSALLYLLFALPLMLFYKEAAPAPRSGGQTGFLSGYK EIAATFKEMKKYRPIFLFMVAYFFFNDALQTAISVMAVYAKTVVGFSTVRFLILYLVATV SSIFGSFVFGYLTRKYGAKRAVVYVALLLIVAIGLGTTAVNEPMFWAAGVIYGISMGSMW VTSRTLIVELSPPDKRGQFFGLFAFSGKVSSIVGPVLYGTITFLLQDQGTLASRVALGSL LVMVVIGLIVHKRIPEQHETV >gi|333606916|gb|AFDH01000050.1| GENE 38 45706 - 47154 1636 482 aa, chain - ## HITS:1 COG:BS_yueK KEGG:ns NR:ns ## COG: BS_yueK COG1488 # Protein_GI_number: 16080226 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinic acid phosphoribosyltransferase # Organism: Bacillus subtilis # 6 476 10 476 490 509 56.0 1e-144 MSSIPNLTLHTDKYQINMMYAHWKNGSHRQKAVFEAFFRKLPFGNGYAVFAGLQRLIDYV HYLKFDEPALRYLSEQEENYDEGFLEELKAFHFGGSIYSMEEGTLVFANEPLVRVEGTIF ETQLIETALLNFINYQTLIATKASRIKNVSPADTFLEFGTRRAQEADAAVWGARASYIAG FDATSNVLAGMMFGIPSKGTHAHSWVQGHATEQEAFDTFAEALPNQVTLLVDTYHTLKSG VPHAIQTAKKMEEQGKRMQAIRLDSGDLAYLSIKARKMLDEAGLEYVKIVASNDLDENTI LNLKAQGARIDTWGVGTQLITAADQPSLGGVYKLVAIEENGVMVPKIKISGNPEKVSTPG WKDVYRIIGSDTGKAIADYIVLHDETDVQEGRKIKLFDPVHPYIYKYVDEYKAVKLLKPV FEDGKQVYEVPSLEEMRAHHRKQLDQFWPEYLRKLNPEKYAVDLSTKTWEMKMKMIENFN FG >gi|333606916|gb|AFDH01000050.1| GENE 39 47197 - 47748 539 183 aa, chain - ## HITS:1 COG:BS_yueJ KEGG:ns NR:ns ## COG: BS_yueJ COG1335 # Protein_GI_number: 16080227 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Amidases related to nicotinamidase # Organism: Bacillus subtilis # 2 176 3 181 183 228 62.0 3e-60 MKALIVIDYTYDFVEGKLRVGDPAIAIEERITALTEEFLEEGGFVVMAVDFHRLNEPFHP ETKLFPPHNIEGTSGRELYGRLNTLYREKEGQILWLDKTRYSAFCGTDLELQLRARGIQE VHLAGVCTDICVLHTAVDAYNKAFELIVHEDAVASFNPDGHTFALNHFRTSLGAQVVRGS EPV >gi|333606916|gb|AFDH01000050.1| GENE 40 47928 - 48353 394 141 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MPAGSKAKTTLFLSLIFPVYAGVGLWAADLLTGTRATSPEGSLLGSFFLLLGIFMAFPFY FVSFFPLGKLLGCLHSTQPVKALAYAVAGGLGGYWLLSNLYGGLLEEQQGMGPAAGVLVF AALGLLLAWTETYLEQKFGAA >gi|333606916|gb|AFDH01000050.1| GENE 41 48384 - 49157 805 257 aa, chain - ## HITS:1 COG:alr4153 KEGG:ns NR:ns ## COG: alr4153 COG4326 # Protein_GI_number: 17231645 # Func_class: R General function prediction only # Function: Sporulation control protein # Organism: Nostoc sp. PCC 7120 # 2 257 20 273 274 211 44.0 8e-55 MTFFQRMLASIGFGAAQVDTRLSKNAYYPGEEVEGVVHIRGGQVEQRIEEIYISLVTEYK REVNNSHVKETREIAKYLVSDPFTLGPNEEMEVPFRFRLAEHTPLTLGHTPVWFSTELDI ASAIDPSDSDRIEVIPSPEMQVVFDAADQLGFRLREAEVKQSPRFGGRIGLLQEFEFVPA GRFRSELDELEISFLPATEGLELLLQIDRKARGLAGFIAEAADADETLLRLRIHPADLGR GPSYMAGVLAELIQDHL >gi|333606916|gb|AFDH01000050.1| GENE 42 49558 - 49695 82 45 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLKKSAVELLSDYQLLDCFVQALQMKLGAEFLQQLASEIRRRNLY >gi|333606916|gb|AFDH01000050.1| GENE 43 49717 - 49980 162 87 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MAGIRKFITNEKERTLSNIRNGTIGKEQATGSLNTLYQLAADIHDIHYMKDISSTIALLR SASDNWQRQGALISQTIDSAVYRPGIK >gi|333606916|gb|AFDH01000050.1| GENE 44 49970 - 50074 87 34 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MPANLFDPIPLPLSNENDERRVFGLCEDHYHYMR >gi|333606916|gb|AFDH01000050.1| GENE 45 50235 - 51872 1553 545 aa, chain - ## HITS:1 COG:CAC0182 KEGG:ns NR:ns ## COG: CAC0182 COG1472 # Protein_GI_number: 15893475 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase-related glycosidases # Organism: Clostridium acetobutylicum # 6 529 8 518 520 392 40.0 1e-108 MKQRSEMSLRQKIGQMMMCGFSTSNEFDSAMKPNKKIIDLIQKHEIGGVILFRRNLDNPK QVSELNHELQVLAKDSAGGPLLISIDQEGGMVARIHEGIACMPGSMAIGATRDAQAAYET ARISGVELRAMGINLNFAPCLDINNNPMNPVIGVRSFGETAEIVGEMGAAAVKGYQAAGV APTIKHFPGHGDTHSDSHHALPMIPHDLERLRELEFAPFVKAIQEGADVLMSAHVIFPAL EPDGLPSTLSKRVLTDLLRGELGYEGVIVTDCLEMKAIADHYGTAEGAVMAVEAGTDLLL VSHTYDTQVQTIERLVEAVESGRISEERINESVDRILALKAGLNITVGAAAGDISAVGSP EHIELVRETYKKSVTLVKDEDQLPLVKDKRTFVIWTEVREWTQIDEVVEQKETLGAFLAE TVHEVTEERIHTNPSEEEVERVLKASQGYDQVIVVTYNASFSPNQVRIVKELAARDSKLV VVAGRNPFDFKEFPEVKTFLASYENRPHAMNAVAGVLTGQFPASGKLPVTVTPEYSYGWS ASPRS >gi|333606916|gb|AFDH01000050.1| GENE 46 51896 - 53521 1487 541 aa, chain - ## HITS:1 COG:BH2109 KEGG:ns NR:ns ## COG: BH2109 COG4753 # Protein_GI_number: 15614672 # Func_class: T Signal transduction mechanisms # Function: Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain # Organism: Bacillus halodurans # 16 538 3 523 525 157 26.0 5e-38 MYNSQNDSKVMMMNLKALLVDDEINILRNLQTVIPWEKHDIEVVALASNGVKALEMVQEH QPDLILSDIRMPLMDGIALLEQVNKLERDIQVILLTGFQEFEYARSALKYGAKDYILKPI NYEELEAVVERVAFDIREKRKAEMDEQKRWSRVRHLAYEKFLFDILLDYTNVTTRHFFED ENSLEETEFTLLLIDLDNYSQLSRSWNEKERKLKNFAVRNVLQDALEPYELLYSVLQTRE GEWCVLIRHQRETPFDLQTVRGWSDALQLAVKQHVKLTVSLGIYPEHMSVLQLADAYKKL QRALQLSPNVEQILLLEEVNPGRNEWNNSMWELVEEIVSSLKRRDKAQMEQTFEKLNQSL RVISEHSYVRVEQILHFLVLHLIREMREINIMSDEEERGLWSNLERSVGVKDLLATIHQL IQDCMNAGMNRKPSELLMVNAKEYIAKNLSNDFGVEEIADHLGISCSYFSLLFKQHFGET FLENLTRQRIELAKSLLRMSDKSITQIGKQVGYAERRYFTRVFYKFTGMTPSEYREQITN A >gi|333606916|gb|AFDH01000050.1| GENE 47 53491 - 55269 1381 592 aa, chain - ## HITS:1 COG:BS_yesM KEGG:ns NR:ns ## COG: BS_yesM COG2972 # Protein_GI_number: 16077762 # Func_class: T Signal transduction mechanisms # Function: Predicted signal transduction protein with a C-terminal ATPase domain # Organism: Bacillus subtilis # 141 587 149 571 577 191 30.0 3e-48 MMNLRKKVFLAFMGFIIIPLLSISIFTYMIFQDITQEKYMEQSELTIKSIGRNIASLFKE ANYYSDYWMLGDNLQTQLVELNENPPSDEQLNNVTNSLRKIFLTYEPLGTFSVYNLYGEN YSSGVIPFTPIPFKTLKDHPIYEEVKNLNGFPRWIGPYENPELTGDNNLFSQVRTVNYYE TPGSGRIGTMFLQFDFKEMDKIFNFYNQKNSHFLLVNQQGVILYDNRKLTNGSNLNKFLS QKVDLTETYATSRVKFDGIESLVTVYDIGLEKYGTPKWALVSVTPWDYISGEMSIILKWV GTIMFLFLISALLFNLLFVNRYIRAIIRIVSSMKQVERGDLDVRVKVQGNDEMTVLSRGF NSLVSRIHDLVEEVKQEQEHKNKAELSLLQAQIKPHFLFNTLESINALAVQNQGKKVSQL VYRLGTILRISFHHKEEIALGLEIDYLKNYMEIQKYRFEELFDFEIHLPRELENHSILKL TLQPLVENSIQHGFEGITYQGIITIRVEDGGDHIILWVEDNGIGIPEDVLVRFQYRKKNP RLDTNEPRVGLGVLNVADRLRIHYGNGYGLYICSEPNKGTRIKCIIPKTTAR >gi|333606916|gb|AFDH01000050.1| GENE 48 55290 - 56132 779 280 aa, chain - ## HITS:1 COG:BH3682 KEGG:ns NR:ns ## COG: BH3682 COG0395 # Protein_GI_number: 15616244 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Bacillus halodurans # 42 280 62 293 293 174 42.0 2e-43 MSKLKNGFLHAFLLLYVFVTLYPLFWGFQNSFKRHVDIVANPFALIKNFTLDNYVNAWTS ANIGRYFVNSLYISVLASVVTIVLASMTAYALTRMYFPKMNKFVTGVFLLAIMIPAGSLL IPLYRFILNVTNVLHIPLYDTHLALILPYIAFGLSLSIIIIMAFIKSLPRELEEAGVMDG LTIYGLFWKIVLPLMTPAIVTVFIINFLGHWNEYVLANVMLSKEALRTLPVAMAAMNNGM AMNYGALLAATMFSIVPVVVIYAILQEKIIEGLAAGSVKG >gi|333606916|gb|AFDH01000050.1| GENE 49 56151 - 57020 647 289 aa, chain - ## HITS:1 COG:BS_yurN KEGG:ns NR:ns ## COG: BS_yurN COG1175 # Protein_GI_number: 16080312 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Bacillus subtilis # 4 281 2 280 292 157 34.0 3e-38 MNKVYRNPLAYLVFIIPTLFFYLTFYMFPLLTTFRYGFTSWDGLTAPVFNGLDNFKEAFN DEYFWISVKNNLYFILFSVFIQVPVIVIFSVLISEVRKLRGFYKTTVFLPSILSTAVVGV LWTVVVFDPTVGLLNKLLESIGLDKLIHLWLADESTAMLSILLTNAWQWTGFYIVLVLAA IFGISKEVYEAAEIDGATGFQRALLITVPLIRPILAVIVLLSITGAMKAMDIVMVMTKGG PYGSTEVMASYMYKVGMTTGNYGYANTIAILIFVFTLIITLFSNLLTKN >gi|333606916|gb|AFDH01000050.1| GENE 50 57121 - 58452 1268 443 aa, chain - ## HITS:1 COG:BH3680 KEGG:ns NR:ns ## COG: BH3680 COG1653 # Protein_GI_number: 15616242 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Bacillus halodurans # 2 374 3 371 438 139 25.0 1e-32 MKKKLATIMAVAVGLTTVLSACGKDGGSTGATTTPNGSAAPKEFTVSFRHTQIKDTAKKR KAMFEDALKEVEANVPGLKFESEGVDEVVNRDTKLKAEMAAGNPPKIFELFGGTDTKNYA KTNNLLDLTPILDELGLKDKFVDLSEFTVDGKVYGLPIAGYLEGMFYNKKIFKDNGVEVP KTYEEFLKACETFKAKGITPMALGGNEAWVLNMLPNTLYVRVGGQSVVDGLQSGQSKWTD EAYVKGHTMFKDLIDKGYFNKDALALKYAQTQDRFANGETAMIFDGGWANQKYSNPDQSK MAADLGFFNFPTVEGGKGNDLINGSYSNGFGFSAKLNENEKKVVKEFIKVFFTEKYQLRQ LKEEGFFPSMKLSSTGDKPIIAEMLKASEGKKTFPAFDSLIQPKVKLDLESGIQAFVGGK KSVQDLLADIQKSQETENKKTAK >gi|333606916|gb|AFDH01000050.1| GENE 51 58819 - 59763 956 314 aa, chain + ## HITS:1 COG:BH1077 KEGG:ns NR:ns ## COG: BH1077 COG1175 # Protein_GI_number: 15613640 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Bacillus halodurans # 21 313 22 314 315 259 49.0 5e-69 MNTVDESLPIRVGTARGIRTASWWNRVREAGIGYLFLLPSLAGFGIFLFYPFFQSLYLSV HSTNLRGKIAEYVGFENYRELLTSEKFYHSLGVTAQFALLTIPTTIAAALLLAALTHRGL KGKRVYQFIFSLPMALSVGTASVIWALLFHPTAGMLNYWLGLLGQAPIAWLSDPSWALVS VSLMTVWMNLGFAYIVLLSGLQSVPEDMYDSAKIDGAGPMRTFFRIVLPLVSPTLFFVGV VSLIGAFQSFGQIQILTKGGPMDTTNVMVYSLYQEAFVNFRFGSGSAQAILLFVIVLFFT FVQFGVLERKVHYS >gi|333606916|gb|AFDH01000050.1| GENE 52 59760 - 60581 1083 273 aa, chain + ## HITS:1 COG:CAC0428 KEGG:ns NR:ns ## COG: CAC0428 COG0395 # Protein_GI_number: 15893719 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Clostridium acetobutylicum # 1 273 1 273 273 257 48.0 2e-68 MIRPLQKTAIYVVLTAAAALVLYPLFFTYASTFMTAGEAGQFPPPLLPESLYLGNLKKVM ELVPIGAFLTNSFTVSLLIMAGQLFTASLAAYAFAFVRFPGKKFVFLLFLSTMMIPWEVT MIPNYLTIRSWGWTDTYAALVVPFLATGFGTFMLRQFFMQLPGELFEAAKIDGCGHIRCF FSIAFPLSKPGLATLGVYSFLSAWNSYLWPLLVTNDPAKRTVQIGISMLQFEEFTSWNLV LAGVALVLLPSLLLLVLGLKQLVRGLTVGAVKG >gi|333606916|gb|AFDH01000050.1| GENE 53 60627 - 62012 1525 461 aa, chain + ## HITS:1 COG:CAC0429 KEGG:ns NR:ns ## COG: CAC0429 COG1653 # Protein_GI_number: 15893720 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Clostridium acetobutylicum # 9 461 2 447 447 407 48.0 1e-113 MFSYKPSRRTSVMAMLLASALLMQACGGANDTTQSSNKETTGSTSAKENAASPVKITFWH SMSGELGKVTDKLISDFNASQKNVQVEGIFQGTYDESLNKMKASMDSKSGPSLIQVYEIG SRYMIDSKAITPVQKFIDADKYDLSQLEENITQYYTIGGKLNSMPFNTSNPILYYNKDMF KAAGLDPEKPPVTFDEITKAAQALSKDGKAGASFAIYGWFMEQFFAKQGAEYVNNGNGRT SPATESYVNKEAGLKALTWWKAMVDNKTALNLGRKTDDTKKAFAAGQIAMMLDSTASLKG IVSTAEGKFQVGTAPLPKPADAAEGGVVVGGASLYITNNKSEAEQKGAWEFIKFLTSPQS QAYWHVNTGYFPITKKAYDEQIVKDNLVKYPQFKTAIDQLHGSKANTATGGAVMGVFPEA RQIVEGAIEEALNGKKTPQAALDEAAKSITEKIGKYNQTVK >gi|333606916|gb|AFDH01000050.1| GENE 54 62309 - 63220 705 303 aa, chain - ## HITS:1 COG:CAC3544 KEGG:ns NR:ns ## COG: CAC3544 COG2199 # Protein_GI_number: 15896780 # Func_class: T Signal transduction mechanisms # Function: FOG: GGDEF domain # Organism: Clostridium acetobutylicum # 11 302 63 356 367 179 34.0 6e-45 MYFSIPIAPQTIVDFRGYAVLLAVHFGGIYSGFIAAVLIAAARIALFGGPNLSAFIGAAN VLFIALAGGLVLRSADKRYWSRWAKMMAVLLVTTGASIFSAIGTTSLPIMPVILGTLAVG GFFIGYMVDYIVRAHQLFLLMKEASHVDFLTGLNNHRTFDRLFNELVQAADRKQEELSLL TLDIDYFKKINDTYGHPAGDAVLQQIGVLLRDSSRRMDEVCRTGGEEFAVLLPDCRREEA LHYAEQIRSRVERHSFLLGDGKAIRLTISIGAATFPQVSPDLLIEEADKALYRAKHNGRN QVC >gi|333606916|gb|AFDH01000050.1| GENE 55 63544 - 64959 775 471 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 11 468 5 458 458 303 36 2e-81 MVVGDASLDIDVLVIGAGPGGYVAAIRAAQLGKSVLIVDKSEWGGVCLNRGCIPSKALIS AAHQYEAAQHSEVMGVSVENVKLDYAKTQEWKASVVKKLTSGVAGLLKGNKVQMFQGEVM FINENEARVFNEQEAPRYRFKHCIIATGSRPIELKPFPFGGRILSSTEALELKEIPKSMV VIGGGYIGIELGQTFAKFGTKVTVLEGSDTVLPGFEKEMTRLVAKNLSKLNVEVFTEALA QSSEQTENDVTVTFTVKGEEKKVTADYVLVTVGRRPNTDGELGLDLINVKLTDRGLIEVD EQGRTSIPHIFAIGDIVPGLALAHKASYEGKVAAEAIAGQPSVVDYKAIPAVVFSDPEIA SVGLNETEATEKGMNVSVGKFPYAANGRALSLNATEGFVKIVANKDTGLVVGSQIVGPEA SNLIAEIGLAIEMGATLEDIALTIHAHPTLGEIVAEAAEGALGHPIHMLGK >gi|333606916|gb|AFDH01000050.1| GENE 56 64964 - 66301 1525 445 aa, chain - ## HITS:1 COG:BS_pdhC KEGG:ns NR:ns ## COG: BS_pdhC COG0508 # Protein_GI_number: 16078524 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes # Organism: Bacillus subtilis # 4 444 3 441 442 428 54.0 1e-120 MARFEYKFPELGEGIHEGEIVKVNVKAGDKVDDDTILMEVQNDKAVVEVPCPVNGQIQEV LIKEGQVCHVGEVVMIIDAEGEIPESETSAAAPSPEAAAPAPSNAPSTELPKKEDQGAPT APAPEETKKSEGGKPSAAPKDILATPSVRKFAREKGINIAEVSGTGKNGRITREDIEGFV SGGGASAAQADQPAQEKAAPSKAASAPAVQGELEEERIPFKGIRKVIANAMVKSKHTAPH VTLMDEVDVTQLVALRTKAKPLAEKKGVKLTYLPFIVKALVAACRQFPVMNAMIDEEKQE IVYKKYYNVGIATDTDNGLLVPVIHHADRQNVWMIADSIRDLATRGRDGKLTPHEMKGST ITITNIGSAGGMFFTPVINYPEVAILGTGRISEKPVVKNGEIVIAPVMALSLSFDHRLVD GATAQNFMNYIKQLLNDPELLVMEV >gi|333606916|gb|AFDH01000050.1| GENE 57 66353 - 67333 1124 326 aa, chain - ## HITS:1 COG:lin1045 KEGG:ns NR:ns ## COG: lin1045 COG0022 # Protein_GI_number: 16800114 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit # Organism: Listeria innocua # 1 326 1 325 325 441 68.0 1e-124 MAQMTMIQAIQDAMRVELARDKNVVLFGEDVGHVGGVFRATEGLQKEFGEDRVFDTPLAE SAIGGLAVGMATQGFRPIAEIQFVGFIYEALDQMAVQAARMRYRSGGSYQAPIVFRTPFG GGVKAAELHTDSLEGLMIQTPGIKVVIPSNPYDAKGLMIAAIRDNDPVFFMEHLNLYRSF RQEVPEGEYTVELGKANVVREGSDATIITYGAMVHTSLKAAEEIEKTRGVKVEVIDVRTL MPLDIDTIVESIKKTNRAIVVQEAQKTSGAAAEIIAQINEKAILHLEAPVLRVAAPDTVY PFAQIEDQWLPTPARIIDGLNQVLDF >gi|333606916|gb|AFDH01000050.1| GENE 58 67465 - 68532 1116 355 aa, chain - ## HITS:1 COG:BS_pdhA KEGG:ns NR:ns ## COG: BS_pdhA COG1071 # Protein_GI_number: 16078522 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit # Organism: Bacillus subtilis # 2 350 12 361 371 434 63.0 1e-121 MSKPQYEVSSEQVQPLTIIGPDGTVVNEEKLPKLSDDQLKELMRRMVFTRVWDERAINLG RQGRLGFYAPVSGQEASMIGSEFALNKEDFICPGYRDMPQIVWHGLPMYQAFLYSRGHQH GGQVPADVNVLMPQIIIGAQILHATGIGMAFKKKGEKRVAITYTGDGGSSEGDFYEGLNF GGAFKLPVIYMVQNNGYAITTPFSKQTGAQSIAHKALAAGIRGVQVDGMDVLAVYAAVSE AAEIARNGGGPTLIESLTYRFKPHSMADDTTKYRTKDEEGEWAPKDPIVRFRTYLTQKGL WSEEEEAKVKEEAKATVAEQIKKAEQTEKMTVGGLIDSMFETTPKHLEEQKAQFS >gi|333606916|gb|AFDH01000050.1| GENE 59 68760 - 69488 517 242 aa, chain + ## HITS:1 COG:BH1440 KEGG:ns NR:ns ## COG: BH1440 COG2382 # Protein_GI_number: 15614003 # Func_class: P Inorganic ion transport and metabolism # Function: Enterochelin esterase and related enzymes # Organism: Bacillus halodurans # 5 241 3 241 242 146 37.0 4e-35 MTDSRHYKRTIVKEEISSKHLNSTRSVRIFLPPGYNEVLSYPVIYCQDGEEFFNFGRIAT TMTAGILDHGWEPAIIVGVDVNVKIRTSEYSPDGENHEAYIRFFAEEMLPFVESKYAVRT DKSDRVLAGDSLGGTVSLHLALTYPHLFARVISLSGAFLEPTRSRLQSEGDLSWLELYML IGLDEEEVKTERGTFDFVEANRLSKALFEQKNARLFYEEKPGKHVWGFWQKELPAILERF FC Prediction of potential genes in microbial genomes Time: Sun Jul 17 08:49:39 2011 Seq name: gi|333606889|gb|AFDH01000051.1| Paenibacillus sp. HGF7 contig00088, whole genome shotgun sequence Length of sequence - 22983 bp Number of predicted genes - 25, with homology - 25 Number of transcription units - 4, operones - 3 average op.length - 8.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 498 484 ## COG3314 Uncharacterized protein conserved in bacteria + Prom 522 - 581 2.3 2 2 Op 1 . + CDS 628 - 1812 535 ## PROTEIN SUPPORTED gi|163764799|ref|ZP_02171852.1| ribosomal protein S12 + Term 1817 - 1866 -1.0 3 2 Op 2 20/0.000 + CDS 1872 - 2387 274 ## PROTEIN SUPPORTED gi|170758590|ref|YP_001787770.1| ribosomal protein L32 family protein 4 2 Op 3 . + CDS 2421 - 2594 276 ## PROTEIN SUPPORTED gi|167463982|ref|ZP_02329071.1| Ribosomal protein L32 + Term 2607 - 2656 9.5 + Prom 2684 - 2743 8.9 5 3 Op 1 4/0.000 + CDS 2794 - 3408 462 ## COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism 6 3 Op 2 16/0.000 + CDS 3392 - 4381 1027 ## COG0416 Fatty acid/phospholipid biosynthesis enzyme 7 3 Op 3 14/0.000 + CDS 4391 - 5377 1052 ## COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III 8 3 Op 4 26/0.000 + CDS 5405 - 6331 1006 ## COG0331 (acyl-carrier-protein) S-malonyltransferase 9 3 Op 5 22/0.000 + CDS 6370 - 7110 231 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 + Prom 7132 - 7191 2.5 10 3 Op 6 27/0.000 + CDS 7214 - 7447 325 ## COG0236 Acyl carrier protein + Term 7477 - 7511 -1.0 11 3 Op 7 1/0.000 + CDS 7564 - 8799 1027 ## COG0304 3-oxoacyl-(acyl-carrier-protein) synthase 12 3 Op 8 6/0.000 + CDS 8821 - 9522 543 ## COG0571 dsRNA-specific ribonuclease + Term 9582 - 9635 8.0 13 3 Op 9 10/0.000 + CDS 10002 - 13580 3676 ## COG1196 Chromosome segregation ATPases + Prom 13609 - 13668 3.0 14 3 Op 10 7/0.000 + CDS 13731 - 14720 1144 ## PROTEIN SUPPORTED gi|163762490|ref|ZP_02169555.1| ribosomal protein L28 + Term 14782 - 14835 -0.4 + Prom 14827 - 14886 4.2 15 3 Op 11 8/0.000 + CDS 14929 - 15279 407 ## COG2739 Uncharacterized protein conserved in bacteria 16 3 Op 12 23/0.000 + CDS 15370 - 16731 1743 ## COG0541 Signal recognition particle GTPase 17 3 Op 13 19/0.000 + CDS 16783 - 17055 411 ## PROTEIN SUPPORTED gi|192812207|ref|ZP_03040875.1| ribosomal protein S16 18 3 Op 14 12/0.000 + CDS 17083 - 17313 241 ## COG1837 Predicted RNA-binding protein (contains KH domain) + Term 17316 - 17356 3.3 19 3 Op 15 30/0.000 + CDS 17496 - 18017 565 ## COG0806 RimM protein, required for 16S rRNA processing 20 3 Op 16 33/0.000 + CDS 18014 - 18802 707 ## COG0336 tRNA-(guanine-N1)-methyltransferase + Prom 18856 - 18915 4.6 21 3 Op 17 5/0.000 + CDS 19017 - 19358 511 ## PROTEIN SUPPORTED gi|169191337|ref|ZP_02851197.1| ribosomal protein L19 + Term 19367 - 19404 6.2 22 3 Op 18 2/0.000 + CDS 19444 - 20076 495 ## COG0681 Signal peptidase I 23 3 Op 19 8/0.000 + CDS 20113 - 20985 793 ## COG1161 Predicted GTPases + Term 21033 - 21088 12.2 + Prom 21066 - 21125 2.8 24 4 Op 1 . + CDS 21146 - 21754 786 ## COG0164 Ribonuclease HII 25 4 Op 2 . + CDS 21837 - 22983 536 ## PPSC2_c2068 protein Predicted protein(s) >gi|333606889|gb|AFDH01000051.1| GENE 1 3 - 498 484 165 aa, chain - ## HITS:1 COG:BH2588 KEGG:ns NR:ns ## COG: BH2588 COG3314 # Protein_GI_number: 15615151 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 15 165 9 159 411 134 49.0 8e-32 MPKSLTHRGGGYRTTLLLGSLAAALVASIIAFPDKALQASLEGITIWWNIVFPALLPFMI LTELLLGFGVVHALGTLLEPLARLLLRLPGTGGLALAAGALGGFPSGALFTAKLRGRKLL TRGEGERLLALSHLASPVLIVTVIGTGFLHSPRLGLLLAGVHYGG >gi|333606889|gb|AFDH01000051.1| GENE 2 628 - 1812 535 394 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764799|ref|ZP_02171852.1| ribosomal protein S12 [Bacillus selenitireducens MLS10] # 64 390 25 345 350 210 38 6e-54 MNDKDHENQRYNDEQGQEERERETGFENGDNVRERPVIRRAHPQRRSRRFFTSLLVGFLC FVILFYVPLPFFIYMPGTAEAVHPMVSVPKSDNTDEKGSLMLVTVRVANANVVTYLWSLA NKYDELQLKKDVLRGMSEKDYSQQQQFVMLTSQSDAIQTAYKKAGVPFHIKGEGVMVTGL SPGLPAEKVMQAGDKVTKADEKKIQTSQDLFAFLENKKEGDTVTLTFIRGNKEMTAPLTL AKLPPDKDTGKSRVGIGITMAEMQSVQADDPSKQVTIKAGEIGGPSAGLMFSLEIYNQLL PEDITKGHKIAGTGTIDTDGKVGVIGGIKHKIIAADREGAEIFFAPQDLKTDKGTIYNYT DALARAKEIGTKMKIVPVATMDDALKYLAELPPK >gi|333606889|gb|AFDH01000051.1| GENE 3 1872 - 2387 274 171 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|170758590|ref|YP_001787770.1| ribosomal protein L32 family protein [Clostridium botulinum A3 str. Loch Maree] # 29 171 31 165 166 110 38 1e-23 MWIQLKDIMAKGQPVAIRESLNSETLLKGRKDILSAGPIVTDLEAKAASDVVEVTGRVSV ELEFGCSRCLTPFKQTLNIPFREIFTSKPEVEAQASEDEEEIVHLVREDKVELNPYIEEN IQLELPLAPVCREDCKGLCPECGTNRNERDCGCKNERIDPRLAGLADFFNS >gi|333606889|gb|AFDH01000051.1| GENE 4 2421 - 2594 276 57 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167463982|ref|ZP_02329071.1| Ribosomal protein L32 [Paenibacillus larvae subsp. larvae BRL-230010] # 1 57 1 57 57 110 89 6e-24 MAVPFRKTSKTRRDKRRTHFKLEVPGMVKCEQCGELKLSHRVCKNCGTYKGREIVQA >gi|333606889|gb|AFDH01000051.1| GENE 5 2794 - 3408 462 204 aa, chain + ## HITS:1 COG:lin1924 KEGG:ns NR:ns ## COG: lin1924 COG2050 # Protein_GI_number: 16800990 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Uncharacterized protein, possibly involved in aromatic compounds catabolism # Organism: Listeria innocua # 5 190 1 189 189 198 56.0 5e-51 MVLVIERLPKRTRQQQLLQAIEDNPFLTDEELMRKFQVSIQTVRLDRLELGIPELRERIK HMAERSYDQVRSLPIDEVIGEIIDLQLDKSGISMFELTEDHVFSRTKIARGHHIFAQANS LAVAVINDPIALTASADIRFIRSAMLGEKCIAKAYVKSLSKGKAKVDVQTFIGDEVVFEG SFVIFHSKKEQLRTEGGQANADRN >gi|333606889|gb|AFDH01000051.1| GENE 6 3392 - 4381 1027 329 aa, chain + ## HITS:1 COG:BH2493 KEGG:ns NR:ns ## COG: BH2493 COG0416 # Protein_GI_number: 15615056 # Func_class: I Lipid transport and metabolism # Function: Fatty acid/phospholipid biosynthesis enzyme # Organism: Bacillus halodurans # 1 325 1 325 337 344 55.0 2e-94 MRIAIDAMGGDHAPAIVVEGALAAAKEWTDVELLLVGDSAKIEALLTERPSNLRVIHASE IIEAEDEPVRAVRRKKDASMVVAGRLVKEGEADAMISAGNTGALMTTGLLVVGRVPGIER PALAPMIPTLDGRGVLALDLGANMDSSPENLLQYAIMGSIYRSKVHGMDRPRVGLLNIGT EAMKGNELTKAAYPLLEQAPVNFVGNVESRDVLRAEYDVIVCDGFAGNIMLKTLEGTALA VFSALKTELTRTTLTKLAAAVLKPGLSAFKEMFDYTEHGAAPLLGLTGLVLKSHGSSDAK AIKNAVRQARTALQNDLVGAIATEIKNGK >gi|333606889|gb|AFDH01000051.1| GENE 7 4391 - 5377 1052 328 aa, chain + ## HITS:1 COG:lin2305 KEGG:ns NR:ns ## COG: lin2305 COG0332 # Protein_GI_number: 16801369 # Func_class: I Lipid transport and metabolism # Function: 3-oxoacyl-[acyl-carrier-protein] synthase III # Organism: Listeria innocua # 7 328 4 310 312 340 54.0 2e-93 MNGIPVGILGAGKYVPDRVLTNQELESMVETNDEWIVTRTGIRERRMAAPEQATSDLALE ASRIALEKAGITADQLDLIIVATVTPDMAFPSASCILQEKLGAKNAAAFDLAAACAGFIY GLANASNFIANGIYKYALVIGADTLSRITDYTDRNTCILFGDGAGAVVIGAVPEGRGFKS FELGADGSGAELLKIAGGGSRNPASPESLDQRLHYIYMAGSEVFKFAVRIMGSAAEEALR KAGLHKNDIDLLIPHQANIRIIQSALNRLELTEDKCMINLDRYGNMSAASIPVALAEAAE QDRLKEGDTTVLVGFGGGLTWGASVLVW >gi|333606889|gb|AFDH01000051.1| GENE 8 5405 - 6331 1006 308 aa, chain + ## HITS:1 COG:BS_fabD KEGG:ns NR:ns ## COG: BS_fabD COG0331 # Protein_GI_number: 16078653 # Func_class: I Lipid transport and metabolism # Function: (acyl-carrier-protein) S-malonyltransferase # Organism: Bacillus subtilis # 1 301 1 301 317 339 58.0 5e-93 MGKIAFVFPGQGAQSVGMGKDAYDAHEGAKRVFDEADKALGYSLSSLVFEGPEDELKITY HTQPALLTASVAYLEVFRQKGIVPDFTAGHSLGEYSALVASGVLGFEDAVRTVRARGEFM EQAVPGGLGAMAAVLGAERGALDELCRSVSAETGAVELANINCPGQIVVSGTREGVQAVV DRAKEIGAKRAIPLEVSGPFHSSLMKPASEKLADVLAGLSLQEAAVPVVANVTARSVTSP DEIRDLLVRQVYSPVLWEDTVAWLIEQGVDTFVEIGSGTVLAGLIKKVSRSVKVVSVNNL EAALQAEI >gi|333606889|gb|AFDH01000051.1| GENE 9 6370 - 7110 231 246 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 5 246 4 242 242 93 29 1e-18 MLSGKAALVTGASRGIGRAIALELAASGADVAVNYAGSEQAAEEVVKEIEAMGRRAVKLR GDVSKSQEAEDLVKQTIEALGSLDILVNNAGITRDNLIMRMKEEDFDIVIATNLKGVFNC TKAATRPMMKQRSGRIINISSVVGVLGNPGQANYVAAKAGVIGLTKASAKELASRGITVN AVAPGFISTDMTDKLPEEQKATLLQQIPLGKLGKPEDIAKIVRFLASDEGSYMTGQTLHV DGGMYM >gi|333606889|gb|AFDH01000051.1| GENE 10 7214 - 7447 325 77 aa, chain + ## HITS:1 COG:BS_acpA KEGG:ns NR:ns ## COG: BS_acpA COG0236 # Protein_GI_number: 16078655 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl carrier protein # Organism: Bacillus subtilis # 1 76 1 76 77 82 78.0 2e-16 MSDVLDRVKKIIIDRLGVEETEVTLEASFKEDLGADSLDVVELVMELEDEFDLEISDEDA EKITTVGEVVNYIKSHT >gi|333606889|gb|AFDH01000051.1| GENE 11 7564 - 8799 1027 411 aa, chain + ## HITS:1 COG:BS_yjaY KEGG:ns NR:ns ## COG: BS_yjaY COG0304 # Protein_GI_number: 16078199 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: 3-oxoacyl-(acyl-carrier-protein) synthase # Organism: Bacillus subtilis # 3 411 5 413 413 509 63.0 1e-144 MNRVVITGLGVMSSLGQEVDTFWGNLLAGKSGVSAIESFDVSEYPTRIAASVKDFNPEDY IDKREARRMDRFVQFAVAASINALKSSGLNIQEDTDPERVGVYVGSGIGGLSTWEEQHKI LLEKGPKRVSPFFIPMMIANMASGQISMITGAKGPNSTAVTACATGTHSIGDSFKLIQRG DADVMICGGAEATISPTGVAGFCALRAMSTRNDEPEKASRPFDTGRDGFVMGEGAGVLVL ESLEHAQKRGAHIYAEVIGYGMSGDAHHMTEPDPDGAARCMVKAIKDAGIAPEEIDYINA HGTSTPVGDKSETTAIKKALGEHAYKVAVSSTKSMTGHLLGAAGGVEAVICGLTLENGII PPTINLDDQDPECDLDYVPNVPRKSDVQVAMSNSFGFGGHNATIILKKYQA >gi|333606889|gb|AFDH01000051.1| GENE 12 8821 - 9522 543 233 aa, chain + ## HITS:1 COG:BS_rncS KEGG:ns NR:ns ## COG: BS_rncS COG0571 # Protein_GI_number: 16078656 # Func_class: K Transcription # Function: dsRNA-specific ribonuclease # Organism: Bacillus subtilis # 12 227 27 242 249 260 64.0 1e-69 MNRDVNQLLADMEIRFQDLDLLRQAFTHSSYVNEHRMANYQDNERLEFLGDAVLELTVSE YLYFKYPHRTEGELTKLRASIVCEPSLVNFAEKLNFGSYVQLGKGEEMTGGRSRPALLAD VFESFIGALYLDQGLEAVKLFLQQHVFPYVSAEGKLLVIDYKTQLQEHTQHHNMGALEYR IVEERGPAHEREFVAEVYMDAKQLGKGAGRSKKEAEQQAASQALTKLNVPMER >gi|333606889|gb|AFDH01000051.1| GENE 13 10002 - 13580 3676 1192 aa, chain + ## HITS:1 COG:BH2487 KEGG:ns NR:ns ## COG: BH2487 COG1196 # Protein_GI_number: 15615050 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Chromosome segregation ATPases # Organism: Bacillus halodurans # 1 1191 1 1188 1188 860 47.0 0 MFLKRIELSGFKSFADRTELEFVKGITAVVGPNGSGKSNISDGIRWVLGETSAKSLRGGK MEDVIFAGSDARRAVNYGEVSLTLDNTSQSLPLDYNEVTVSRRVHRSGDSEYFINKQSCR LKDITELFMDTGIGKEAYSIIGQGRIEEILSNKSEERRSIFEEASGIVKYKSRKKESEKK LQETEQNLLRIHDLVTELEDQINPLREQAEKAIRYKELKEELKHSEIAVYVHQIDQIYVS WSETNEKLTALKKEQLSLSTFVSQHDAQLEKHRWETKRLEEELEKLQETLLQISEDFEKC EGHGEVLKERKKNFASNEQQLEQTIVLQETRFSEKEAELAGHREKIVHIGAQLFEYQAKL SEEENRLQGVSGGLNSGVEDQLKSELLDKMNAMAQCRNEIRYAEQQLESLARRLQKLEEE GQKRTALQSDIAARKKQLETKLEQTRKEVEKIRSAYLDLSESLKKKQTLLEESSGMLRKW EQRIDALTSRRDTMKEMQNDYDGFMHGVKEVLKAKNRSDGLKGIHGAVAELVSVPAEIEL AVETALGGALQNIVVATEAYGREAIAFLKRRQMGRATFLPMDVIRGRSIGESERGALTSS NGFVGIGVDLIKFDPQYHNIFSSLLGTVIIAETLEDANRIAAKAHYRYRVVTLEGDIVNP GGSMTGGSLQKKSSNLLGRQRQIEELDGEIEASETQLQQLKTRASQARKEIVEDNANLEE LRGRGEQKRIEEQQIRADLAPLEAEVRRMEEQLTLERDDRSTLLEERGQQERSIEENRRQ LEELQQEEEALQQAIRDAESSRKANESAKEELQNQLTDLKVRVASASQEKQSLQDQQRRL QQDLAEAKQELEMNRRQLWQLRAEMEFHAEESVKQVELLNTLKLRKQKCTEDIEFKRSER AGWMDKLQQAENETRQQRTQLKQVEEQCLQHEVRVNRLDVELENLLKKLGEEYEMSYELA KERYPVPEDITGAQNKVRDLKRSISSLGDVNLGAIEEYARVSERYDFLSVQKDDLVEAKT TLYTVIREMDQEMSKRFKTTFDAIRSHFVVVFVKLFGGGRADLILSDPENLLETGIEIVA QPPGKKLQNLQLLSGGERALTALALLFSILRVKPVPFCVLDEVEAALDEANVTRFAEYLR EFSETTQFIVVTHRKGTMEEADVLYGVTMEEGGVSKLVSVRLEDEEAMISAS >gi|333606889|gb|AFDH01000051.1| GENE 14 13731 - 14720 1144 329 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163762490|ref|ZP_02169555.1| ribosomal protein L28 [Bacillus selenitireducens MLS10] # 1 324 1 326 336 445 68 1e-124 MSFFKRLKESISSKTEAVTNKFKEGLTKTRDVFVDRVDDLFSRRKKIDEEFYEELEEILI GADVGVSTVMELIEQLRGEVRKRKIEDPNDLQPVLSEKLTELLKGSEDSSIRLAPGGLSI ILFVGVNGVGKTTTIGKMAHMYKSQGKKVILAAGDTFRAGAIEQLETWGQRVGVDVIKQQ AGSDPAAVMFDAVQAAKNRGADILLCDTAGRLQNKVNLMEELNKIYRVIRREVPDAPHEV LLVLDATTGQNALQQAKMFGDKTGLTGLVLTKLDGTAKGGIVVAIRQELNIPVKFVGLGE KMDDLQPFDSEQFVHALFGKWIAEEKAEA >gi|333606889|gb|AFDH01000051.1| GENE 15 14929 - 15279 407 116 aa, chain + ## HITS:1 COG:lin1916 KEGG:ns NR:ns ## COG: lin1916 COG2739 # Protein_GI_number: 16800982 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 6 96 1 91 110 84 53.0 5e-17 MTEDRILEKTNRINLLFDFYEPMLTDKQQAVLKLYFHDDYSLGEIAEQFKISRQAVYEHV KRAEQMLEDYESKLLLLTKHERRLKLLSEAEELLLQSPGDLADRAADYMRRIVHTE >gi|333606889|gb|AFDH01000051.1| GENE 16 15370 - 16731 1743 453 aa, chain + ## HITS:1 COG:BH2484 KEGG:ns NR:ns ## COG: BH2484 COG0541 # Protein_GI_number: 15615047 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal recognition particle GTPase # Organism: Bacillus halodurans # 1 432 1 433 451 569 71.0 1e-162 MAFEGLTGRLQGVFDKLRGKGKLTEEDVSEALREVRLALLEADVNFKVVKDFIAKVKERA VGQDVMKSFTPGMVVIDIVNKELTDLMGGTHTKLAKANKPPTVIMMVGLQGAGKTTTSGK LAKMLQKQNHKPLLVACDIYRPAAIKQLQVLGDQLKVPVFSMGDQVSPVEIAKNGLQFAK DNNNDYVIVDTAGRLHIDEALMDELKNVREAVGPHETLLVVDAMTGQDAVNVAESFHKQL ELTGVVLTKLDGDTRGGAALSVKAVTGCPIKFAAMGEKMDALEPFYPERMASRILGMGDM LTLIEKAQAGIDADKAKEMERKMRNAEFTFDDFLEQMEQVKKLGPLDQLLDMLPGAGKMK GMKDLKVDDKQMGRVEAIVKSMTKEEKRKPEIINANRRKRIALGSGNSVQDVNRLLKQFE DMRKMMKQFSGMMNPKAMKNMKKLGKGFKFPFG >gi|333606889|gb|AFDH01000051.1| GENE 17 16783 - 17055 411 90 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|192812207|ref|ZP_03040875.1| ribosomal protein S16 [Geobacillus sp. Y412MC10] # 1 90 1 90 90 162 90 1e-39 MAVRIRLKRMGAHKAPFYRVVVSDSRSPRDGRFIEEIGYYNPVAQPAVVKIDEEKALKWL QNGAQASDTVRSLFSKAGLMTKFHESKLKK >gi|333606889|gb|AFDH01000051.1| GENE 18 17083 - 17313 241 76 aa, chain + ## HITS:1 COG:BH2482 KEGG:ns NR:ns ## COG: BH2482 COG1837 # Protein_GI_number: 15615045 # Func_class: R General function prediction only # Function: Predicted RNA-binding protein (contains KH domain) # Organism: Bacillus halodurans # 1 75 1 75 76 77 58.0 6e-15 MKEVITVIAKALVDHPEDVRVNAVEGENSVVYELSVHPGDVGKVIGKQGRIAKALRTVVT SAAVKENKRVTVEIMS >gi|333606889|gb|AFDH01000051.1| GENE 19 17496 - 18017 565 173 aa, chain + ## HITS:1 COG:BS_ylqE KEGG:ns NR:ns ## COG: BS_ylqE COG0806 # Protein_GI_number: 16078665 # Func_class: J Translation, ribosomal structure and biogenesis # Function: RimM protein, required for 16S rRNA processing # Organism: Bacillus subtilis # 1 172 1 173 174 157 48.0 7e-39 MSDKLYTVGTIVNTHGLRGELKVVPHTDFAEQRFADGSKLVIEDAKGKLTPVTIKSTRLH KNMYIAQFKEFSHINEVEIFKSSLLRVEEKYLESLNEDEYYYHEILGCRVLTEEGEELGT IQEILTPGANHVWVVGRPNKKQLLLPVIDDVVLDVNVEEKIVTVHLLEGLLDL >gi|333606889|gb|AFDH01000051.1| GENE 20 18014 - 18802 707 262 aa, chain + ## HITS:1 COG:BH2479 KEGG:ns NR:ns ## COG: BH2479 COG0336 # Protein_GI_number: 15615042 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA-(guanine-N1)-methyltransferase # Organism: Bacillus halodurans # 1 258 1 245 246 344 65.0 1e-94 MNIDVLTLFPAMFEGVFTSSILGKAREKGIVNLSTVNFRDFAGNKHNTVDDYPYGGGGGM VLKPDPIFAAVESLLDVPSSGSETAGEPVSTGARPRVILMCPQGETFTQRKAEELSREEH LIFICGHYEGYDERIREHLVTDELSIGDYVLTGGELPAMVVIDSVVRLLPGVLGNEQSAV TDSFSTGLLEYPHYTRPVEFRGWTVPDVLISGHHANITEWRRLQSLYRTFKRRPELLENA ELTDKEKRWLREKMAEEEGQQG >gi|333606889|gb|AFDH01000051.1| GENE 21 19017 - 19358 511 113 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169191337|ref|ZP_02851197.1| ribosomal protein L19 [Paenibacillus sp. JDR-2] # 1 113 1 113 113 201 89 4e-51 MNLIQEITKEQLRSDIPSFRPGDTLKVFVKVIEGSRERVQLFEGVVIKRRGGGISETFTV RKISYGVGVERTLPLHSPKIEKIEVARRGKVRRAKLYYLRGLRGKAARIKEIR >gi|333606889|gb|AFDH01000051.1| GENE 22 19444 - 20076 495 210 aa, chain + ## HITS:1 COG:BS_sipT KEGG:ns NR:ns ## COG: BS_sipT COG0681 # Protein_GI_number: 16078505 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal peptidase I # Organism: Bacillus subtilis # 6 204 3 188 193 139 40.0 5e-33 MERREQEVSAETENAAAPAKNPVKKEAWEWIKALLIAAVLVFLIRWLLFAPFIVEGPSME PNFHTGERLIVNKIKYKFSEPKRGEVIVLHAPEGIDYIKRVVATPGETIKVDGDKVYIND KVIEEPYIKEAIDNAVKEGHAYNRRNFPEAGSEGTTEIKVPDKSVFVMGDNRSNSKDSRF AELGFVSYDKIVGRADLVFWPLNKAGFVHF >gi|333606889|gb|AFDH01000051.1| GENE 23 20113 - 20985 793 290 aa, chain + ## HITS:1 COG:BH2476 KEGG:ns NR:ns ## COG: BH2476 COG1161 # Protein_GI_number: 15615039 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Bacillus halodurans # 1 286 1 280 284 354 60.0 1e-97 MTIQWFPGHMTRARRQIEDKLKLIDVAIELLDARIPMSSRNPMVDDILKGKPRLVLLNKA DLADPAITAEWVKYFTDQGLKALPIDASSGTGVKEILPRCKELMSAKIETQLRKGINPRA IRGLIVGIPNVGKSTLINQLAGRKIANTGDKPGVTKGQQWIKFGTDMDLLDTPGILWPKF DDQNVGMKLAATGAIKEEILHLDDIAFHTIRYMTEYYGERLKERYGIEELPADSENPNEV IEVMETIGRKRGAIISGGRVDLDKTSLLFLRELRSGKLGRVSLEVPEEYL >gi|333606889|gb|AFDH01000051.1| GENE 24 21146 - 21754 786 202 aa, chain + ## HITS:1 COG:BS_rnh KEGG:ns NR:ns ## COG: BS_rnh COG0164 # Protein_GI_number: 16078669 # Func_class: L Replication, recombination and repair # Function: Ribonuclease HII # Organism: Bacillus subtilis # 11 190 69 248 255 199 58.0 4e-51 MLQEETGLWEKGYSRIAGVDEVGRGCLFGDVVAAAVIMPQGLILEGVDDSKKLSEKKREE LYDVIMKEAIAVGIGTIDVKTIEEINIKQASRLAMKLAVEQLNPAPDFLLVDAEKVDLNT RQMAIIHGDATSQSIAAASIIAKVTRDRMCREWDKLHPEYGIAKHKGYATRQHREMLIEY GPTPLHRKLFIRNVLVMQQELF >gi|333606889|gb|AFDH01000051.1| GENE 25 21837 - 22983 536 382 aa, chain + ## HITS:1 COG:no KEGG:PPSC2_c2068 NR:ns ## KEGG: PPSC2_c2068 # Name: not_defined # Def: protein # Organism: P.polymyxa_SC2 # Pathway: not_defined # 1 198 10 209 708 129 46.0 2e-28 MAGGMQAAEPKTLELKPGQVVKGVVLQVYDNQEAQMSIDGVQVRAKLETPLAPGQTAWLQ VQPESTGGQVVLKPAAGPAVPATQEEIGQMLKQTGLKDTAVNRELVQMMKQQGIPLTKEA AAPLQDIMSRIPASVKPEQWVQAVGVAVSKGLPLTADTVGAIHQALFGKPFGETLQNLAQ TLSGLLQNGGLAEGTNGSGEKLLRQLADVLRTMQDTTAEVGGKPASNGTASSLENGTGKP GLAAGTPTANSGGGTGTAGQADTRQPGGIRPDGSGGTAQAAGQGRQVLPGTSGLPQTAAG VPADGSVRLTPSAGGMQAGAAAELPQGADRPAAGASAPGTQAQAAGGTPAGQTAAQAGGG APAAAPGTPAGGPAGLAPAPGR Prediction of potential genes in microbial genomes Time: Sun Jul 17 08:50:24 2011 Seq name: gi|333606775|gb|AFDH01000052.1| Paenibacillus sp. HGF7 contig00260, whole genome shotgun sequence Length of sequence - 118356 bp Number of predicted genes - 112, with homology - 105 Number of transcription units - 73, operones - 23 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 1072 667 ## COG0477 Permeases of the major facilitator superfamily + Term 1149 - 1192 12.1 - Term 1137 - 1179 8.1 2 2 Op 1 . - CDS 1228 - 2073 196 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 3 2 Op 2 . - CDS 2093 - 2326 114 ## Pjdr2_1639 transcriptional regulator, MerR family - Prom 2503 - 2562 4.9 - Term 2554 - 2580 -1.0 4 3 Tu 1 . - CDS 2633 - 3130 298 ## GYMC10_3418 hypothetical protein - Prom 3206 - 3265 2.0 + Prom 3097 - 3156 6.0 5 4 Op 1 . + CDS 3255 - 3809 341 ## COG2323 Predicted membrane protein 6 4 Op 2 . + CDS 3812 - 3946 75 ## gi|304406003|ref|ZP_07387661.1| protein of unknown function DUF421 + Term 4032 - 4067 -0.5 + Prom 4038 - 4097 5.8 7 5 Op 1 . + CDS 4253 - 4726 -185 ## + Prom 4776 - 4835 2.5 8 5 Op 2 . + CDS 4870 - 5613 469 ## COG2188 Transcriptional regulators + Term 5631 - 5679 16.2 + Prom 5733 - 5792 3.4 9 6 Op 1 1/0.286 + CDS 5823 - 6539 550 ## COG0813 Purine-nucleoside phosphorylase 10 6 Op 2 . + CDS 6570 - 7907 608 ## COG0477 Permeases of the major facilitator superfamily + Term 7923 - 7984 19.6 - Term 8094 - 8137 2.2 11 7 Tu 1 . - CDS 8158 - 8646 -12 ## COG3386 Gluconolactonase - Prom 8743 - 8802 2.9 12 8 Tu 1 . - CDS 9551 - 10000 376 ## CLK_1741 hypothetical protein - Prom 10031 - 10090 2.0 13 9 Op 1 . - CDS 10195 - 10638 314 ## BpOF4_17580 hypothetical protein 14 9 Op 2 . - CDS 10643 - 14311 2055 ## COG0464 ATPases of the AAA+ class - Prom 14355 - 14414 4.8 + Prom 14624 - 14683 7.8 15 10 Tu 1 . + CDS 14882 - 16201 725 ## Bmul_5986 hypothetical protein - Term 16040 - 16068 3.0 16 11 Tu 1 . - CDS 16186 - 16482 65 ## gi|253575473|ref|ZP_04852810.1| predicted protein + Prom 16901 - 16960 7.2 17 12 Tu 1 . + CDS 17147 - 17803 280 ## COG0110 Acetyltransferase (isoleucine patch superfamily) + Term 17844 - 17900 17.4 + Prom 18226 - 18285 2.1 18 13 Tu 1 . + CDS 18355 - 19059 599 ## COG2323 Predicted membrane protein 19 14 Tu 1 . - CDS 19288 - 20490 668 ## Mrub_2145 pectinacetylesterase putative - Prom 20571 - 20630 6.4 + Prom 20691 - 20750 6.3 20 15 Op 1 . + CDS 20842 - 21405 211 ## SACE_6110 TetR/AcrR family transcriptional regulator 21 15 Op 2 . + CDS 21447 - 21845 320 ## gi|228991437|ref|ZP_04151392.1| hypothetical protein bpmyx0001_21940 + Term 21972 - 22008 1.6 22 16 Tu 1 . - CDS 22171 - 22455 84 ## COG0662 Mannose-6-phosphate isomerase - Prom 22556 - 22615 5.6 23 17 Op 1 . - CDS 22689 - 23201 -232 ## COG2207 AraC-type DNA-binding domain-containing proteins - Prom 23230 - 23289 3.1 24 17 Op 2 . - CDS 23294 - 23443 93 ## - Prom 23633 - 23692 4.2 + Prom 24499 - 24558 4.7 25 18 Tu 1 . + CDS 24787 - 25677 312 ## gi|315644158|ref|ZP_07897328.1| hypothetical protein PVOR_01375 + Term 25882 - 25918 1.9 26 19 Tu 1 . + CDS 27099 - 28532 -132 ## COG0827 Adenine-specific DNA methylase + Term 28558 - 28612 8.6 + Prom 29387 - 29446 2.9 27 20 Op 1 . + CDS 29487 - 29876 111 ## 28 20 Op 2 . + CDS 29816 - 29995 70 ## gi|291461472|dbj|BAI83354.1| conserved hypothetical protein + Term 30007 - 30045 8.1 29 20 Op 3 . + CDS 30076 - 30225 69 ## + Term 30439 - 30482 10.5 - Term 31026 - 31063 1.1 30 21 Tu 1 . - CDS 31121 - 31528 237 ## GYMC10_6271 hypothetical protein - Prom 31548 - 31607 5.0 31 22 Tu 1 . - CDS 31970 - 32152 240 ## Bcen_3469 hypothetical protein - Prom 32212 - 32271 3.4 32 23 Tu 1 . - CDS 32289 - 32642 147 ## RER_55940 hypothetical protein - Prom 32721 - 32780 3.2 + Prom 33141 - 33200 3.7 33 24 Tu 1 . + CDS 33404 - 33826 74 ## BBR47_58920 hypothetical protein + Term 33886 - 33923 2.3 34 25 Tu 1 . - CDS 33882 - 34460 88 ## PPSC2_c5400 hypothetical protein - Prom 34488 - 34547 7.5 35 26 Tu 1 . - CDS 34572 - 35123 -25 ## DNO_0179 hypothetical protein - Prom 35146 - 35205 1.7 - Term 36017 - 36064 4.7 36 27 Tu 1 . - CDS 36116 - 36631 -12 ## COG2856 Predicted Zn peptidase - Term 37068 - 37098 2.3 37 28 Tu 1 . - CDS 37298 - 38065 199 ## CD2928 hypothetical protein - Prom 38091 - 38150 6.6 + Prom 38245 - 38304 6.5 38 29 Tu 1 . + CDS 38373 - 38918 183 ## COG1309 Transcriptional regulator + Prom 38977 - 39036 4.5 39 30 Tu 1 . + CDS 39056 - 40222 533 ## COG2814 Arabinose efflux permease + Term 40381 - 40424 -0.4 - Term 40256 - 40295 2.1 40 31 Tu 1 . - CDS 40448 - 40897 383 ## COG0789 Predicted transcriptional regulators - Prom 40960 - 41019 3.6 41 32 Tu 1 . + CDS 41073 - 41924 766 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase + Term 41970 - 42018 14.5 - Term 42217 - 42245 -0.2 42 33 Tu 1 . - CDS 42292 - 43170 366 ## COG0384 Predicted epimerase, PhzC/PhzF homolog 43 34 Tu 1 . - CDS 43702 - 43812 73 ## COG0346 Lactoylglutathione lyase and related lyases - Prom 43833 - 43892 6.5 - Term 43833 - 43873 8.2 44 35 Tu 1 . - CDS 43932 - 44393 11 ## - Prom 44620 - 44679 4.1 + Prom 44966 - 45025 5.0 45 36 Tu 1 . + CDS 45092 - 45589 259 ## HMPREF0868_0528 hypothetical protein + Term 45675 - 45709 2.4 - Term 45662 - 45694 5.0 46 37 Tu 1 . - CDS 45717 - 46193 221 ## Plabr_3551 hypothetical protein - Prom 46232 - 46291 3.2 + Prom 46851 - 46910 1.9 47 38 Tu 1 . + CDS 46946 - 48118 124 ## COG1680 Beta-lactamase class C and other penicillin binding proteins + Term 48272 - 48305 2.1 - Term 48254 - 48299 2.4 48 39 Tu 1 . - CDS 48442 - 48984 404 ## Sterm_0139 hypothetical protein - Prom 49084 - 49143 3.4 + Prom 49366 - 49425 3.1 49 40 Tu 1 . + CDS 49580 - 50959 902 ## COG0693 Putative intracellular protease/amidase + Term 51019 - 51071 10.2 - Term 51005 - 51059 15.2 50 41 Tu 1 . - CDS 51102 - 52241 113 ## COG0577 ABC-type antimicrobial peptide transport system, permease component - Prom 52392 - 52451 5.2 51 42 Op 1 4/0.143 - CDS 53705 - 54388 327 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) - Prom 54412 - 54471 1.9 - Term 54413 - 54447 -1.0 52 42 Op 2 40/0.000 - CDS 54473 - 55084 72 ## COG0642 Signal transduction histidine kinase - Term 55394 - 55451 -1.0 53 42 Op 3 . - CDS 55467 - 56153 174 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Term 56285 - 56327 9.5 54 43 Tu 1 . - CDS 56539 - 57135 216 ## COG0262 Dihydrofolate reductase + Prom 57489 - 57548 5.5 55 44 Tu 1 . + CDS 57598 - 57945 95 ## PPSC2_c5205 hypothetical protein + Term 57959 - 57987 -0.0 - Term 59810 - 59840 -0.5 56 45 Tu 1 . - CDS 59845 - 59925 80 ## - Prom 59960 - 60019 8.4 57 46 Op 1 . - CDS 60144 - 61718 1221 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains 58 46 Op 2 . - CDS 61764 - 62369 456 ## COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain - Prom 62405 - 62464 2.0 - Term 62742 - 62782 4.8 59 47 Tu 1 . - CDS 62859 - 64598 533 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains - Prom 64669 - 64728 5.1 + Prom 64787 - 64846 5.3 60 48 Op 1 . + CDS 64892 - 66076 577 ## PPE_00244 hypothetical protein 61 48 Op 2 . + CDS 66073 - 69078 2451 ## COG0553 Superfamily II DNA/RNA helicases, SNF2 family + Term 69089 - 69120 -0.8 - Term 69533 - 69566 4.1 62 49 Tu 1 . - CDS 69806 - 70096 77 ## Ccel_2678 AraC family transcriptional regulator - Prom 70129 - 70188 2.9 63 50 Tu 1 . - CDS 70754 - 71134 145 ## ABC1020 hypothetical protein - Prom 71227 - 71286 4.7 64 51 Tu 1 . - CDS 71500 - 71979 590 ## COG1576 Uncharacterized conserved protein + Prom 72242 - 72301 4.3 65 52 Tu 1 . + CDS 72360 - 73898 1634 ## COG1070 Sugar (pentulose and hexulose) kinases + Term 73928 - 73990 12.2 - Term 73887 - 73915 -0.0 66 53 Tu 1 . - CDS 73982 - 74356 92 ## - Prom 74421 - 74480 5.2 - Term 74481 - 74538 18.7 67 54 Op 1 . - CDS 74552 - 74719 190 ## PPE_04907 hypothetical protein 68 54 Op 2 . - CDS 74739 - 75977 1416 ## COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain - Prom 76073 - 76132 3.8 + Prom 76029 - 76088 5.6 69 55 Tu 1 . + CDS 76151 - 76363 273 ## PPE_04911 hypothetical protein 70 56 Op 1 . - CDS 76332 - 77138 1005 ## COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I 71 56 Op 2 . - CDS 77184 - 77948 812 ## Pjdr2_6252 hypothetical protein 72 57 Op 1 4/0.143 - CDS 78050 - 79336 1561 ## COG4863 Uncharacterized protein conserved in bacteria 73 57 Op 2 8/0.143 - CDS 79333 - 81165 2229 ## COG5002 Signal transduction histidine kinase 74 57 Op 3 1/0.286 - CDS 81167 - 81901 888 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 81940 - 81999 2.6 - Term 81958 - 82007 11.1 75 58 Tu 1 . - CDS 82049 - 83563 1417 ## COG0739 Membrane proteins related to metalloendopeptidases - Prom 83653 - 83712 5.2 76 59 Tu 1 . - CDS 83771 - 84496 582 ## Pjdr2_6257 hypothetical protein - Prom 84677 - 84736 3.1 - Term 84681 - 84734 9.0 77 60 Tu 1 . - CDS 84788 - 86074 1497 ## COG0104 Adenylosuccinate synthase - Prom 86136 - 86195 5.2 - Term 86168 - 86213 12.5 78 61 Op 1 16/0.000 - CDS 86224 - 87579 1415 ## COG0305 Replicative DNA helicase 79 61 Op 2 9/0.143 - CDS 87645 - 88088 571 ## PROTEIN SUPPORTED gi|167462805|ref|ZP_02327894.1| 50S ribosomal protein L9 80 61 Op 3 4/0.143 - CDS 88085 - 90052 778 ## PROTEIN SUPPORTED gi|85057286|ref|YP_456202.1| exopolyphosphatase-related protein 81 61 Op 4 . - CDS 90070 - 90993 1002 ## COG4241 Predicted membrane protein 82 61 Op 5 . - CDS 90999 - 91262 81 ## PPE_04924 hypothetical protein - Prom 91344 - 91403 4.1 83 62 Tu 1 . - CDS 91422 - 91775 243 ## COG0662 Mannose-6-phosphate isomerase - Term 92061 - 92101 8.1 84 63 Op 1 21/0.000 - CDS 92115 - 92423 413 ## PROTEIN SUPPORTED gi|167462797|ref|ZP_02327886.1| 30S ribosomal protein S18 (BS21) 85 63 Op 2 24/0.000 - CDS 92443 - 92925 263 ## COG0629 Single-stranded DNA-binding protein 86 63 Op 3 . - CDS 92964 - 93251 381 ## PROTEIN SUPPORTED gi|192809478|ref|ZP_03038153.1| ribosomal protein S6 - Prom 93336 - 93395 5.5 + Prom 93410 - 93469 3.0 87 64 Op 1 . + CDS 93496 - 93678 298 ## Pjdr2_6274 hypothetical protein 88 64 Op 2 . + CDS 93696 - 93977 394 ## gi|167462779|ref|ZP_02327868.1| hypothetical protein Plarl_09480 + Term 94067 - 94105 8.5 - TRNA 94112 - 94202 60.3 # Ser CGA 0 0 - Term 94055 - 94093 9.3 89 65 Op 1 2/0.143 - CDS 94281 - 94517 240 ## COG4481 Uncharacterized protein conserved in bacteria 90 65 Op 2 . - CDS 94522 - 95445 990 ## COG0668 Small-conductance mechanosensitive channel 91 65 Op 3 . - CDS 95459 - 95710 410 ## Pjdr2_6278 hypothetical protein + Prom 95708 - 95767 3.4 92 66 Tu 1 . + CDS 95864 - 96478 302 ## PPE_04941 hypothetical protein + Term 96689 - 96736 -0.2 - Term 96382 - 96412 2.1 93 67 Op 1 . - CDS 96453 - 96947 582 ## GYMC10_6329 hypothetical protein 94 67 Op 2 2/0.143 - CDS 97014 - 98177 752 ## COG0520 Selenocysteine lyase 95 68 Op 1 25/0.000 - CDS 98279 - 99139 731 ## COG1475 Predicted transcriptional regulators 96 68 Op 2 25/0.000 - CDS 99120 - 99893 466 ## COG1192 ATPases involved in chromosome partitioning - Prom 99935 - 99994 5.0 97 68 Op 3 . - CDS 100325 - 101152 523 ## COG1475 Predicted transcriptional regulators - Prom 101208 - 101267 6.0 98 69 Op 1 24/0.000 - CDS 101412 - 102140 420 ## COG0357 Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division 99 69 Op 2 11/0.000 - CDS 102149 - 104038 1610 ## COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division 100 69 Op 3 4/0.143 - CDS 104061 - 105437 1155 ## COG0486 Predicted GTPase - Prom 105465 - 105524 3.9 - Term 105475 - 105519 5.2 101 70 Op 1 16/0.000 - CDS 105526 - 106143 555 ## COG1847 Predicted RNA-binding protein 102 70 Op 2 22/0.000 - CDS 106140 - 106895 397 ## COG0706 Preprotein translocase subunit YidC - Prom 106922 - 106981 5.8 103 70 Op 3 . - CDS 107000 - 107347 186 ## COG0594 RNase P protein component - Term 107451 - 107479 -1.0 104 71 Tu 1 . - CDS 107486 - 107620 195 ## PROTEIN SUPPORTED gi|226315534|ref|YP_002775430.1| 50S ribosomal protein L34 - Prom 107794 - 107853 4.7 + Prom 107828 - 107887 5.2 105 72 Op 1 16/0.000 + CDS 108121 - 109461 1097 ## COG0593 ATPase involved in DNA replication initiation + Term 109468 - 109518 -0.1 + Prom 109529 - 109588 3.8 106 72 Op 2 6/0.143 + CDS 109630 - 110772 961 ## COG0592 DNA polymerase sliding clamp subunit (PCNA homolog) 107 72 Op 3 9/0.143 + CDS 110812 - 111027 220 ## COG2501 Uncharacterized conserved protein 108 72 Op 4 . + CDS 111054 - 112172 601 ## COG1195 Recombinational DNA repair ATPase (RecF pathway) 109 72 Op 5 . + CDS 112179 - 112427 164 ## PPE_00005 hypothetical protein 110 72 Op 6 24/0.000 + CDS 112462 - 114378 1843 ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit 111 72 Op 7 1/0.286 + CDS 114443 - 116968 1757 ## COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit + Term 116980 - 117019 4.2 + Prom 116972 - 117031 5.4 112 73 Tu 1 . + CDS 117058 - 118131 866 ## COG2206 HD-GYP domain + Term 118149 - 118190 4.2 Predicted protein(s) >gi|333606775|gb|AFDH01000052.1| GENE 1 2 - 1072 667 356 aa, chain + ## HITS:1 COG:lin2977 KEGG:ns NR:ns ## COG: lin2977 COG0477 # Protein_GI_number: 16802035 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 1 347 119 465 470 111 27.0 2e-24 ILSLIQANYPPERRGAIFGMYGATQGIAATAGQIIGGLLLRMNLWDLDWRAVFLISVLLG ALILALIPFIPESGSPDRARLDWIGAALAAAGLLMLVYPLVQGQRQGWPADLVVSLLLSA PVLVLFAWYERRLLRRGRLPFMNVDLFRHKVFTSGILVVLLLMSTQGAFFLVAAYMLQLG LHFSALQAGLVIGSMGMGYFLASLFSSRVAAKLGAHVLTVGSILTTAGYLLLSWAVRTTG GSSDIGVWIPALAVLGIGQGFVAAPLTNIVLAKIRTTDIGSASGVMTTSIQIASTIGIAL IGIVWLSALEAHTGSVSAYPDAFNICLNVLAAVTVLILPLALMLAGRNGARRSRKK >gi|333606775|gb|AFDH01000052.1| GENE 2 1228 - 2073 196 281 aa, chain - ## HITS:1 COG:STM2445 KEGG:ns NR:ns ## COG: STM2445 COG1028 # Protein_GI_number: 16765765 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Salmonella typhimurium LT2 # 4 208 3 195 263 78 28.0 2e-14 MDTKLQNKVALITGAKSGIGFELTKRLLSEGIQVIALIRSDLQSNDSLVRESLKNNHLRV YKADLSDFKSLKAALNEIKSSEERIDVIFNNAGIMPEKINYSKQGREMQFEVHAVVPYII FMELRELLLKGVMKTIVNTSSNALLMVKQFELETLEKPAKFKKLMGGYATSKLALSLWTQ AVSQTASAEGIEIRSICPGPNKTPMSGSSGMPLYMIPIRNLFFSPPSKGAARLYEAAFGV NRGKTGVFINKGKITPVKFMQESRSVLEKVDFIYKLEFLNS >gi|333606775|gb|AFDH01000052.1| GENE 3 2093 - 2326 114 77 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_1639 NR:ns ## KEGG: Pjdr2_1639 # Name: not_defined # Def: transcriptional regulator, MerR family # Organism: Paenibacillus # Pathway: not_defined # 3 67 55 119 168 62 47.0 5e-09 MSLITCMKKTGMSLNEMKPFLSLSQEGDVQLDPDLYNLLQTHKEKIEVQIKGMQIILEFI NNKLKKGEGFGKTFYAE >gi|333606775|gb|AFDH01000052.1| GENE 4 2633 - 3130 298 165 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_3418 NR:ns ## KEGG: GYMC10_3418 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 165 6 170 170 236 73.0 2e-61 MNKKIGEFIIWANENGWDITPKSGFQLNLDSSILSRYKEIPNEYLDFLSVVEKCMTPNEE TWFICENEFNNSSDSAFKWNEYELLSLEAAMDDTIWKSEITAWWDNYLPIVMSVDGGYSF YAIDLTNDKGAIVRGYEPEFEEVDKVANSLEEFLELIMSSSIGFQ >gi|333606775|gb|AFDH01000052.1| GENE 5 3255 - 3809 341 184 aa, chain + ## HITS:1 COG:CAP0147 KEGG:ns NR:ns ## COG: CAP0147 COG2323 # Protein_GI_number: 15004850 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Clostridium acetobutylicum # 3 180 4 180 225 137 41.0 1e-32 MTYGEILFRTATSFVALLVLTRLLGKKQVGHLTFFNYVTGITFGSTTAEIIVNRQITLLQ GISSLVLWSLLTFIIALTGLRSVRAREILDGQPTILVKKGMIMEKALAKQHLNIDDLIML LRNKDVFSPEEVEFAILEPDGKLSVLRKEELLPATKKDIKATVTPIQRIPTELIVDGKIV EKIL >gi|333606775|gb|AFDH01000052.1| GENE 6 3812 - 3946 75 44 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|304406003|ref|ZP_07387661.1| ## NR: gi|304406003|ref|ZP_07387661.1| protein of unknown function DUF421 [Paenibacillus curdlanolyticus YK9] protein of unknown function DUF421 [Paenibacillus curdlanolyticus YK9] # 1 41 187 226 226 68 80.0 2e-10 MDVSAAWLNQQLKKASIHSLDQVFYAELQLDGTLYIDKYQDSIP >gi|333606775|gb|AFDH01000052.1| GENE 7 4253 - 4726 -185 157 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLLPSSCERLIIPSWRTGSGIFERSWTEIPQGEFTRPIPLPIHSPSCQTAFPVPCLLIVQ TMLQGFERMRLVDHLGNCPDSFKIGAIRSYSVNANISNKEHARFAFGLSFGSKQPCQHIN ILVPGFYDCHWITSLDFLDSSYCRRSGCVTLTDNLIK >gi|333606775|gb|AFDH01000052.1| GENE 8 4870 - 5613 469 247 aa, chain + ## HITS:1 COG:SA0130 KEGG:ns NR:ns ## COG: SA0130 COG2188 # Protein_GI_number: 15925839 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Staphylococcus aureus N315 # 14 247 6 243 246 166 35.0 4e-41 MEVKPEHPAKAKIPLYLTVYNELFKKIMSGVFPPNSQLPTEPELAKMFDVSRMTLRQALA LLQDDGLVKSIHGKGNFVTPSRMVQRNDGLDKIGNPIYKCHTEDIDRVDIQFRLDLESDY TKEVLKRKATAVVAVERWYMSKGQAVAFGFTFMAIEAVTELNLDLQNEEQLLDMLENKVY ELANSATVEVKHSTVMNTSSQKFELNAGEGCDLLLESLYVNEQYPLVYNKYYIPKEFSRI VINASRK >gi|333606775|gb|AFDH01000052.1| GENE 9 5823 - 6539 550 238 aa, chain + ## HITS:1 COG:SA1940 KEGG:ns NR:ns ## COG: SA1940 COG0813 # Protein_GI_number: 15927712 # Func_class: F Nucleotide transport and metabolism # Function: Purine-nucleoside phosphorylase # Organism: Staphylococcus aureus N315 # 5 238 2 235 236 323 64.0 2e-88 MSTSTKETPHIQPGGAEIAETILLPGDPLRAKFIAENFLENVVQFNEVRGMLGYTGTFKG RKISVMGTGMGTPSMSLYSWELIHVFGVKNLIRIGSAGAIQDHLNLYDIVFAMGSATDSN YGHQYNLPGHYSITASFELLEKAKKIADAQGQKVHVGNVLSSDIFYNADPTALKKWSEMG ILCAEMESAGLYMNAAHAGVNALCILTISDHIFRHESTTPEERQTAFTKMMEIALELA >gi|333606775|gb|AFDH01000052.1| GENE 10 6570 - 7907 608 445 aa, chain + ## HITS:1 COG:SA0132 KEGG:ns NR:ns ## COG: SA0132 COG0477 # Protein_GI_number: 15925841 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Staphylococcus aureus N315 # 18 445 9 449 450 351 54.0 2e-96 MAAITEQTPQTAPSFQAKRAVPVILLFFVFALIVDNSFKLVSVAIAEDLGISAAAVSWQA SLAGLVIGIGAVIYASLADTISIRKLLSAGIILICIGSVIGFIFQHSYLLVIIARMIQTA GLAAAETLYVIYVTKHLPKEEQKKFLGLSTSSYSLSLVIGSITGGYVSTYLNWSTLFLIP LLSLILLPFILKYLPKEQSRKSHVDFIGLLLISAITTSVMMYLTDFNWIFIVIFIAAAGL FLGYISKSKKSFIGISFFQNKRFAAVLAIAFVIYSVQLGYIFIFPFLLQKMYNLQLDTIS LLLIPGYVTAILIGSLSGKIAKVLTNKQAVSIAMIIIVCSLALPGLIGGSVIVYVLSMLL FSGSFAFMYAPMLDSCIRSIPVERSGTAIGFYNLVLNVAVSIGITYTASLMDVVSFGTVL WILAIITLFALLMYVLLVGRLTESK >gi|333606775|gb|AFDH01000052.1| GENE 11 8158 - 8646 -12 162 aa, chain - ## HITS:1 COG:DR1790 KEGG:ns NR:ns ## COG: DR1790 COG3386 # Protein_GI_number: 15806791 # Func_class: G Carbohydrate transport and metabolism # Function: Gluconolactonase # Organism: Deinococcus radiodurans # 14 157 242 384 388 149 47.0 2e-36 MNRNPDGSTFPFRLASDSLAISPDGKVLFYAPLTSRQLFSISTEALRDRRIQDMDLSQYV QYWGEKGASDGMITGAKGTVYAGDYENNSIRKILPDGAMETIAHDPRILWPDTFSIGPDQ YLYVIVNQLHRQARFHYGRDLREKPYSLLRMRIDEFPAPTFS >gi|333606775|gb|AFDH01000052.1| GENE 12 9551 - 10000 376 149 aa, chain - ## HITS:1 COG:no KEGG:CLK_1741 NR:ns ## KEGG: CLK_1741 # Name: not_defined # Def: hypothetical protein # Organism: C.botulinum_A3_LochMaree # Pathway: not_defined # 13 149 93 225 225 80 40.0 2e-14 MITFGMGMYFQGSTGSIKDVQSNGIGKGMKAGIQLAAADDSAGLEARDFEIEMKKNTTTS RMLIWDFAAEDGDVVTVKVDGNILQANINIMHNPVFLDIPIPSVVEITGVKDGGGGITYG VKFPGAVQNNAYFNAAPVGSSNVYTITGQ >gi|333606775|gb|AFDH01000052.1| GENE 13 10195 - 10638 314 147 aa, chain - ## HITS:1 COG:no KEGG:BpOF4_17580 NR:ns ## KEGG: BpOF4_17580 # Name: not_defined # Def: hypothetical protein # Organism: B.pseudofirmus # Pathway: not_defined # 1 137 2 137 148 68 34.0 8e-11 MKVLKWLLAIVFYHSFMLGVIIVTLFMPFMIYGDIRNLLINEVPVASGGVIVISLLAFFI YLAMRSQFLGIPYRKITILLPFLQMLIYTSFTLSIGVMILNKWADEGLYSKGWAITLMLL AIVAIRLCMSLLYWKYPIDRQTNRYME >gi|333606775|gb|AFDH01000052.1| GENE 14 10643 - 14311 2055 1222 aa, chain - ## HITS:1 COG:BH2289 KEGG:ns NR:ns ## COG: BH2289 COG0464 # Protein_GI_number: 15614852 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ATPases of the AAA+ class # Organism: Bacillus halodurans # 684 1222 237 771 775 338 39.0 5e-92 MRINRSSMLKALKFLFPEYQLVELVREKGFIAKKEDPPAPTRQVQPTQQYHAGSGARSAG PSYSEQAAAGQNISSPTSRPVQTPAYTSQGEGRNDAQSALSPKQLDQLFREVEKNVNSQV IGQAFFVDDLVAGYKQGYMNGRQSNKPRNVILLAGAPGTGKKTALEWLVREMHARRVTSR PHIAEIDLQRYEADELSGNFISDMAEAFRHSEGTVLFQGVKGADPAIIGLVAKLAAEGSF RTKEGVRISAADYFIIFYIDEHAERESEYGQVPSVLARHLPASILQTILAAAISSPLEQE TMRQIAGILLGKAIDDLSRDMQTEITVHPSTYEALADIAAANKTFGEAVQHWIDKELTVV LSGLRARNEIRGNESVRIRFKNDSFFVESNSLEIPIKALSFVRQESIDDVLEELNALTGL EPVKKFVYELMETVQVNKLRAREGEGSVAMSLHMVFTGNPGTGKTTVARLVGRILKALGL LPQGQLIEVTRQDLVGQYVGSTAPKTMAQVNEALGGVLFIDEAYTLARHDHDTFGIEAID TIVKAMEDHRDHLVVVLAGYTQEMETFLRSNPGLRSRFPFIVEFPDYKAADMLDIMIQMA NKNGFRIETDAYEGLIELFDQKQIPGRNDSGNGRLVRNLFEEAVRKQATRLRGLMSGATS DTDLQLLTGADFGIGEKEAFNIENELAGIVGLEKVKLFVRTLEKQLIVDRRRKEAGIHVD TGQTLNMIFSGNPGTGKTTMARLVAGMLRSMGYLKKGHLVEVDRSDLVAEYVGQTANKTK LVVESALGGVLFIDEAYALAQDGVQGGGFGKEAIDSLVRLIELHKDNLVVILAGYTEDMQ RFVQVNPGLSSRFPLQIEFPDYTAEEMQQIASIMVKARGFALAPDVSGLLESYFNEKQIP GRKDGGNGRLVRNTLEEAIRKQAERLADHPDIAADQLNELTVEDFGLSAHVDLAGKRANA LGALDAVVGLSSVKEFVKSLSAQIEVAKRRQEMGLPKASAQALHMVFKGNPGTGKTTIAR ILAQRFKELGVIKADTLVETDRSGLVAGYVGQTALKTKEVIERALGGILFVDEAYALAEG DQFGQEAIDTLVKAMDDYRDRLIVILAGYDEDMERFLNRNAGLRSRFPNMITFPDYTAEE MLQIARLLVKAQGYVIVREAEATLLSILETYEGDRTAGNGRLVRNLVEKAIRDHALRMSK KADATAEELSALMPEDFKERRG >gi|333606775|gb|AFDH01000052.1| GENE 15 14882 - 16201 725 439 aa, chain + ## HITS:1 COG:no KEGG:Bmul_5986 NR:ns ## KEGG: Bmul_5986 # Name: not_defined # Def: hypothetical protein # Organism: B.multivorans # Pathway: not_defined # 29 439 43 449 452 259 40.0 1e-67 MLKLGLCALVFVSFSSVTVQGAQAAASVLATADQQALDVWSIQINQNNNYPLLKAQAKAA YKLAYGGSLSTEAESRLDNAINELAFSAIQKAVNNDPYFPKVYWLNTPPRSWLGLNVPGG RYSYDNPDNIYRTIPIDGSSKYIIHGKRTFPGPTDVTFSLISNPNSQQTITFLSGKDLVV NADGSYAITVDSDPANGRANHIQSTSAAVQLFVRNNLGNWNTETPDALTVERLPDGSQRT PKSQLAIAAEAWANLQESIVDYGYGALGIKTHTNPVNTLSSPSVSSTLGTLVTQASSFGH FKLADDEALVARVTTGGAGYVVFPVTDPWMVTVDPIRHQSSLNNVQAAPNANGSYTFVVS VKDPGVANWIDPVGLHEGTIMVRWQNLPDKPPATGGPSVQTQVVKLADLSRVLPSDTRYV TSEQRSRQLADRAAGYALR >gi|333606775|gb|AFDH01000052.1| GENE 16 16186 - 16482 65 98 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|253575473|ref|ZP_04852810.1| ## NR: gi|253575473|ref|ZP_04852810.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14] predicted protein [Paenibacillus sp. oral taxon 786 str. D14] # 13 81 9 77 77 68 57.0 1e-10 MIAITEKIVSPINEAASANRCSLIGLIIDDATSAQLLAVARRHCKLAPEHGKAITTAVRR REIIEEIQSLRSLRGGLIDELRKSQNNGGKRDLCQRSA >gi|333606775|gb|AFDH01000052.1| GENE 17 17147 - 17803 280 218 aa, chain + ## HITS:1 COG:VCA0253 KEGG:ns NR:ns ## COG: VCA0253 COG0110 # Protein_GI_number: 15601021 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Vibrio cholerae # 8 192 21 200 232 192 52.0 5e-49 MKQHRFNHWSEIKYLKDIVTNPMIEVGEYSYYSGYYDNHDFEDGCVRYLWGDEKSRKLFN PIENYGWLLDKLIIGNYVCIASGVIILMGGNHNHHPEWITVYPFVEQIETSYEPKGDTII ENDSWIGMNAMIMPGVKIGEGAIVAAGSVVVKDVPPYTIVGGNPAKEIKKRFSDKEIEKL KEMRWFDWEREKIEQASHIFSSSSIDQLYDFYQREIKS >gi|333606775|gb|AFDH01000052.1| GENE 18 18355 - 19059 599 234 aa, chain + ## HITS:1 COG:BS_ydfS KEGG:ns NR:ns ## COG: BS_ydfS COG2323 # Protein_GI_number: 16077621 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Bacillus subtilis # 5 234 4 233 235 219 50.0 3e-57 MQAYVEVIFRTIAAFVLLMITSRILGKQTISNMTFHDFVSGITLGAIAANLAFNDKLNHW PIVVSLLMFFVISFLVSKIALKNQAWNRLVSGTPTVIIENGKILEDNMRKIRYTLDSLAQ SLREKDIFNIAEVEYACLEDHGKLSVKKKSDYEWVTRKDLKLHAAAVQSFPVELIMDGII MEDNLVHNGLTVQWLEQVLRQRNKSVSDVFYAVRGTQNQLYFDYYRDHIDKPID >gi|333606775|gb|AFDH01000052.1| GENE 19 19288 - 20490 668 400 aa, chain - ## HITS:1 COG:no KEGG:Mrub_2145 NR:ns ## KEGG: Mrub_2145 # Name: not_defined # Def: pectinacetylesterase putative # Organism: M.ruber # Pathway: not_defined # 54 384 23 328 339 134 27.0 6e-30 MAKKKIVKRINKILLTAIGGIIIILGVLAGYVHFFILEKPAEPDKWAATESYVWNKIKFD QDAQVISADSSEYYLLANKGATAEDKLIIYFSGGGVAWDAVTAAQPISLSNVVKNGEIKY YFPNIPFFKVSTLGGLLKNNNPDNPFKDWNIVYIPYSTGDLHIGNASKEYTDAKGKPFTM RYNGQANTRAALEWIANHFAAPEKILIAGESAGGFGAAFWAPEIAKRYPDARIYQYSDSS YLNADRWPDIIDNEWKANFAATFGYEVQVDLISSVFAANRKLLPDNAVLLQSNTLYDELL FDFEKDLNGDVSDDSEYVHRWSARMLQSAGELTEVLPGYYYYITDYGLNEKTGRTPHTLS PLNHFYKAEQDGVKLMKWLDDAVNKDEYYSVGRHFVEKEG >gi|333606775|gb|AFDH01000052.1| GENE 20 20842 - 21405 211 187 aa, chain + ## HITS:1 COG:no KEGG:SACE_6110 NR:ns ## KEGG: SACE_6110 # Name: not_defined # Def: TetR/AcrR family transcriptional regulator # Organism: S.erythraea # Pathway: not_defined # 4 186 28 206 209 144 43.0 2e-33 MTCAIELISSRGYAQASLAQIAKEAGISKGVISYHFSGKDDLIEQIVSDLYESGSTFMTP YLAAQTTALGWINTYIDKNVMFMKSHRKHVIAVTEIIFHARDEEGKPRHFRNIDTDATIN VLVKMLHRGTMEGDFREFTDFSARVLAATIRSAIDGLSFQLAASLDLDLDAYAKELVTIF QMAARKV >gi|333606775|gb|AFDH01000052.1| GENE 21 21447 - 21845 320 132 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228991437|ref|ZP_04151392.1| ## NR: gi|228991437|ref|ZP_04151392.1| hypothetical protein bpmyx0001_21940 [Bacillus pseudomycoides DSM 12442] hypothetical protein bpmyx0001_21940 [Bacillus pseudomycoides DSM 12442] # 1 115 2 116 126 98 46.0 2e-19 MNKTFVVGIILILIGIAWGLLLDGIGMREWLLLLSGIVLGIIAGLVQRWAVVRQRLGLIT PDKKRLWIIGVIVVLVIVKVAINVFIPSYLATSNSGIYLSIVYAIGGLLLGHALYLRFKP MPQPAKLRDNRM >gi|333606775|gb|AFDH01000052.1| GENE 22 22171 - 22455 84 94 aa, chain - ## HITS:1 COG:PA2490 KEGG:ns NR:ns ## COG: PA2490 COG0662 # Protein_GI_number: 15597686 # Func_class: G Carbohydrate transport and metabolism # Function: Mannose-6-phosphate isomerase # Organism: Pseudomonas aeruginosa # 1 89 30 118 124 118 58.0 3e-27 MNDYQFKLIKIAGDYEWHVHQDTDKVFIALEGEMTLDFRDGQVKISKGEMYIVPKGIEMK PSAEKECHLMLVEPKSVINTGGPETEITAAVISL >gi|333606775|gb|AFDH01000052.1| GENE 23 22689 - 23201 -232 170 aa, chain - ## HITS:1 COG:BH0989 KEGG:ns NR:ns ## COG: BH0989 COG2207 # Protein_GI_number: 15613552 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Bacillus halodurans # 4 169 110 274 278 110 32.0 9e-25 MHQHFELLTGQSPRLLELIMRLWHVYNQRGGISKFQTEMLFRDVLNEALLCVDNRQNSCG THTLFERVSNYIQEYYYQSLTIASLAEQNNVNRNRLSYVFRTHAGMGPAEYLVNYRINMA QRMLFTSDAPVQQIAQAVGIADPFYFSRVFKKQFGISPTEYREKFINNPC >gi|333606775|gb|AFDH01000052.1| GENE 24 23294 - 23443 93 49 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLEIQVCLTLTIQILFLDLCFLLQGKYNFNLMEPPISFRQGKLYMGVQK >gi|333606775|gb|AFDH01000052.1| GENE 25 24787 - 25677 312 296 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315644158|ref|ZP_07897328.1| ## NR: gi|315644158|ref|ZP_07897328.1| hypothetical protein PVOR_01375 [Paenibacillus vortex V453] hypothetical protein PVOR_01375 [Paenibacillus vortex V453] # 1 296 1 296 296 407 73.0 1e-112 MRDAAEGQQKHGQQEHIETLPLFSTTDKNGRMTMLRPGRRVGRAAPLMPWLLTAAALWAL TGSVPFGALLGMAPTPAISMLLGHPVTVGVAVLLLFVAIGTTGAVYSLSNEQFGQTRVAG LFATLSRAGGLAAVAGVLLLWTLTSDQSRPFDLEAIATSPTIPLELGAVVGASFALWAAI ALLRLPGSIAHARRRQADIERLRVEGSSCTGTLTAVHFTNRWLFNFPMFTVEVNYIVDGA PRVVSAHMRTSVDRVPVVGSRMIVLIDDRGTTHVELDLASGTSFEPDVGKYTPSDG >gi|333606775|gb|AFDH01000052.1| GENE 26 27099 - 28532 -132 477 aa, chain + ## HITS:1 COG:CAC3534 KEGG:ns NR:ns ## COG: CAC3534 COG0827 # Protein_GI_number: 15896770 # Func_class: L Replication, recombination and repair # Function: Adenine-specific DNA methylase # Organism: Clostridium acetobutylicum # 11 473 105 570 571 538 58.0 1e-152 MIKVQNMTTRNDHFNVIHEDFYSWYRENLNGERYDLVVGNPPYIRYQYLSEDQREEQSRI LTSNGMRSNKLINAWVSFVVACVSLLDRNGKIGFVIPAELLQVAYSEDLRNYLMRNLQHI TIVTFRELVFEDIEQEVVLLLGEKDVEHAEEHQIRILEFDNIIDLVENFETNTVPFVDIE FTNTKWTRYFLSTKDNVLINEIRQSTDFIQFNEIAEVDIGITTGNNNFFCVDRATAEDYG LIDISRPLIARSVSMDGIYFNEQVWQANVDRGAKAYLLDFPTIDFEQYPEGQRRYIIEGE KRGENTGYKCRIRNRWYQVPSIWTPDAFFLRRNYLYPKFVLNDFNAVSTDTMHRIRFADG IDSRRAILAYYNSITLAFTEIEGRSYGGGVLEILPGEVEKIFVPNLFQIELTDDYIEQLL HLIDDHVKKNDDILGILPEIDSRILVEILNIPMETVTAFRDMWLLLRNRRLQRGRNR >gi|333606775|gb|AFDH01000052.1| GENE 27 29487 - 29876 111 129 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MDHKQQIEHTEVLDPAIVILDNKGMQLKEVWVSKELKERDLNVPTGTTTNVTGSMLLKRV NMILISRLTFVWMYLKTSTGVIDQERKAILSTQEQNFTLSLRELTTVNTNWNLSTIQELI PKRMSNGSL >gi|333606775|gb|AFDH01000052.1| GENE 28 29816 - 29995 70 59 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|291461472|dbj|BAI83354.1| ## NR: gi|291461472|dbj|BAI83354.1| conserved hypothetical protein [Macrococcus caseolyticus] # 1 59 343 401 404 70 61.0 3e-11 MELKHDTRTDTKTYEQRQPMTHLLWGNAKKLIANRNLLEKHLTLFQVLGSTDEFLIEIQ >gi|333606775|gb|AFDH01000052.1| GENE 29 30076 - 30225 69 49 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MDIIQKLIIKRLKAEFEQNPENGDGTVWIMLASSKSFNENEENHHYTLA >gi|333606775|gb|AFDH01000052.1| GENE 30 31121 - 31528 237 135 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_6271 NR:ns ## KEGG: GYMC10_6271 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 135 1 135 135 221 88.0 5e-57 MLNRVLGKEKDIIRAFAKEIVDSIADGRYEEIAQKVDDMQDWDVELLKEVIESFKEDNEL GQIDRFDVECTFRPVYKDGSVYQQESFYYFNDGSGIAYEYALTTDGEPNDLTLSFEFHFE GDSLRVIFKSGITVL >gi|333606775|gb|AFDH01000052.1| GENE 31 31970 - 32152 240 60 aa, chain - ## HITS:1 COG:no KEGG:Bcen_3469 NR:ns ## KEGG: Bcen_3469 # Name: not_defined # Def: hypothetical protein # Organism: B.cenocepacia # Pathway: not_defined # 1 53 1 53 192 70 60.0 3e-11 MIYKFTEVLNDLIDYFILGDILLLESWKQSNHLSDNLAMEFTTNESGDHAVLELSLYNYI >gi|333606775|gb|AFDH01000052.1| GENE 32 32289 - 32642 147 117 aa, chain - ## HITS:1 COG:no KEGG:RER_55940 NR:ns ## KEGG: RER_55940 # Name: not_defined # Def: hypothetical protein # Organism: R.erythropolis # Pathway: not_defined # 1 115 1 109 115 70 36.0 2e-11 MGVSVYYTCMRNHNLTNSEEQEITAIIDKYNAGFEMKDIGETFCVYDYDQDEPTVIFAGS TKLPFSDDFEVILNALNYWLTCLTNIRRSISNGDWHVHLDDTDAIWDEETGWQMPEY >gi|333606775|gb|AFDH01000052.1| GENE 33 33404 - 33826 74 140 aa, chain + ## HITS:1 COG:no KEGG:BBR47_58920 NR:ns ## KEGG: BBR47_58920 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 1 140 1 140 140 243 81.0 1e-63 MQLTDSTYSAIRALCKQGDDLVKTGDFDAAKQNYMAALRLLPENHQEWEAATWIYAAIGD VHYRLKNYDKAFKCFFNAVQCPNGLGNPYIHLRLGQLYYEQENFEKAADELTRAYMGGGI EIFMEDDPKYLEFLETNIEI >gi|333606775|gb|AFDH01000052.1| GENE 34 33882 - 34460 88 192 aa, chain - ## HITS:1 COG:no KEGG:PPSC2_c5400 NR:ns ## KEGG: PPSC2_c5400 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa_SC2 # Pathway: not_defined # 95 144 40 89 122 84 82.0 2e-15 MSKNEISEFVGQIKQEELKLKEVEERIESFSAKAREYRNSAQKSEPSPETPAKVAELIRQ AIYYKSLAENTMHTERYTQLQKLDMAKETATRLGNPALTVHKEFLVIDESVIASECMFKS VTEFCEKIIPYLLNKKNESLFYLGSTMMRRRIRWWTWMILKQLIPNPDLSKGWVCFAYNG ILNAPVIEQQQR >gi|333606775|gb|AFDH01000052.1| GENE 35 34572 - 35123 -25 183 aa, chain - ## HITS:1 COG:no KEGG:DNO_0179 NR:ns ## KEGG: DNO_0179 # Name: vrlM # Def: hypothetical protein # Organism: D.nodosus # Pathway: not_defined # 8 148 327 470 495 86 32.0 5e-16 MQWYMQDFIEDLKSRNWYVQNDVIEAVILLGPEKLSVANNDFLIQLGRNFLQAADGGART AEEFIKSLYKESNNWPEAFVEGMFLETFINDDERLRFKKYFQSSLVAVLRLEKYAKIIAR AILLLKTCTPKNWITEKTFDKTLESLQVAIDSLKGTKQKSVENFREAMEQTKIRILKDQE LEE >gi|333606775|gb|AFDH01000052.1| GENE 36 36116 - 36631 -12 171 aa, chain - ## HITS:1 COG:SA0142_2 KEGG:ns NR:ns ## COG: SA0142_2 COG2856 # Protein_GI_number: 15925851 # Func_class: E Amino acid transport and metabolism # Function: Predicted Zn peptidase # Organism: Staphylococcus aureus N315 # 8 139 62 196 223 97 39.0 9e-21 MHDWNNDLELVSREEFRQIENEAHQFAASFLLPKEAFLKDLILPNNLDFYIELKKKWRVS ISAMIVRAYQLKVLNYNQYQYLMRQISKKGWRTKEPLDNVIQVSKPTVLRKAIEVLQGNR VLTGDQFMKQLSKNNISLNKDEVEVLLGLDRGTLNDSKQNSVILKLKDDRN >gi|333606775|gb|AFDH01000052.1| GENE 37 37298 - 38065 199 255 aa, chain - ## HITS:1 COG:no KEGG:CD2928 NR:ns ## KEGG: CD2928 # Name: not_defined # Def: hypothetical protein # Organism: C.difficile # Pathway: not_defined # 13 213 11 210 251 92 31.0 2e-17 MVKQDLYISMADNHKTVIIDAIRNASKKDIMEFRMERKVETFNSVHFLKWDFINTNLIRT LPTSQFQCVKIKRGPLWELVLIYDKETQYLYAAMQEKRFHQLSERTYKETVHYIDALSSI NCDLEANVKLNPAKQLSLFESENDDWNAQVEYELNSMLHMLEGEVKRFVLITFSTEKGEI ASVNAIMPNAKLEITYEENWNEFITADFSIALESQGAIAAEQEEEIFVGLREGVISHQQN DDLVQLRDDETEKEG >gi|333606775|gb|AFDH01000052.1| GENE 38 38373 - 38918 183 181 aa, chain + ## HITS:1 COG:BS_yeeK KEGG:ns NR:ns ## COG: BS_yeeK COG1309 # Protein_GI_number: 16077753 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus subtilis # 1 136 196 335 378 82 33.0 4e-16 MIDSAMELFWETGYEACSTEDLCKQTGLGRGSLYNAYGSKHELYEQALLHYHEIGIQAQI EILQGQGPIKDRLRALLDWAIQEDFANENRRGCLLINAAMERAQRDPLVERLFKRHVDLL EQALQQAIETGQMSGEISRTHQASDLVHLFLGNYYGLRVLNAAQNRERAVQMAKATLEIV F >gi|333606775|gb|AFDH01000052.1| GENE 39 39056 - 40222 533 388 aa, chain + ## HITS:1 COG:PA3336 KEGG:ns NR:ns ## COG: PA3336 COG2814 # Protein_GI_number: 15598532 # Func_class: G Carbohydrate transport and metabolism # Function: Arabinose efflux permease # Organism: Pseudomonas aeruginosa # 1 339 1 340 388 237 49.0 3e-62 MPFAIYVLGMMIFSMTTAEFTVAGIMPSLSNEFDVSIASVGYLITAYAAGMIVGGPLLAI GLSKVSKKRAFLLISAIFLFGQILGASAISYEMMMVARIITGVSSAACFGISLGICFDLV SPQYRGRAASIVLGGLMVATALGLPAAMLFNQYFGWRSSFWAVVVLVLLSGMLGMKVIPT ASHSESVSLRSELASFKNPNLWAAFATSLLIIGATFAAFSYFTPILTDLSGFDTAMVPLI LGIYGIATIAGNLVTGRTADRYMMPTLTIGLMLLTAALLMFGLYPRSPYISVLAVIMIGL TGVTLNPAMSTRITRVAGTGTLVTTVHGSIISLGVVVGSSIGGLTIDSGYGLHSPLWVGF ILAILGLISLLPYLKRAKASAIMMKSKS >gi|333606775|gb|AFDH01000052.1| GENE 40 40448 - 40897 383 149 aa, chain - ## HITS:1 COG:lin0818 KEGG:ns NR:ns ## COG: lin0818 COG0789 # Protein_GI_number: 16799892 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 2 116 3 117 129 85 33.0 2e-17 MHTVKEAAQITGLTEHAVRFYTDKGLVPSVQRDENNIRLFNEESINWLHGVKCLKQSGMP IEVIKKYIDLCLEGDSTIPLRYTIMMEHKEAALVKLEEAKRHVAHLEEKTTLYQDILEHR SPDTTNPGNWDKILHMHSDVFYSSSVREA >gi|333606775|gb|AFDH01000052.1| GENE 41 41073 - 41924 766 283 aa, chain + ## HITS:1 COG:TM1009 KEGG:ns NR:ns ## COG: TM1009 COG0656 # Protein_GI_number: 15643767 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Thermotoga maritima # 4 274 6 279 286 375 66.0 1e-104 MQTVTLNNGVKMPIIGFGVYQVPDAEECENAVYEALMAGYRLIDTAAGYLNEEAVGRAIK RSGIPREELFITTKLWVQDAGYESAKLAFAKSLKKLQLDYLDLYLIHQPFGDYYGAWRAM EELYREGKMKAIGVSNFLPDRLMDLIVHNEIVPALNQIETHPFYQQTETTVFLKEQGVQH QSWAPFAEGRGNMFGNEVLTSIAEKHNKSVAQVVLRWLVQREVVVIPKSVRKERIVENFD IFDFELSADDMEQISTLDTRESLFLSYRDPEVAKMMGNWRVDL >gi|333606775|gb|AFDH01000052.1| GENE 42 42292 - 43170 366 292 aa, chain - ## HITS:1 COG:lin0782 KEGG:ns NR:ns ## COG: lin0782 COG0384 # Protein_GI_number: 16799856 # Func_class: R General function prediction only # Function: Predicted epimerase, PhzC/PhzF homolog # Organism: Listeria innocua # 1 292 1 281 282 244 47.0 1e-64 MNVEVYTLNAFAKGERGGNPAGVVLEGGLSLCAAEMQLIAKELGFSETAFMEKSLFADYK IRYFTPASEVDLCGHATIAAFGLMHSLGLAKEGTSYKIETKAGILDVDISSEGLVYLSQA LPQFLERISCEEIAPSLGMDAEDLETGLPIQIVSTGLRDILIPIRSRKLLNEVQPNFDAI TAISEKYDVVGYHLFTMDTPDDAAAECRNFAPLYDIPEESATGTSNGALLSYLYQHGQLS LREVEHVMFRQGYSMNCPSEIKVGLRLSESGEINQVRVGGAVAGIERRHITI >gi|333606775|gb|AFDH01000052.1| GENE 43 43702 - 43812 73 36 aa, chain - ## HITS:1 COG:mlr2185 KEGG:ns NR:ns ## COG: mlr2185 COG0346 # Protein_GI_number: 13472024 # Func_class: E Amino acid transport and metabolism # Function: Lactoylglutathione lyase and related lyases # Organism: Mesorhizobium loti # 1 33 100 132 133 58 66.0 4e-09 MPWGNRSMLFRDPDGNLLNLFEPVTEDAIKRFEGRY >gi|333606775|gb|AFDH01000052.1| GENE 44 43932 - 44393 11 153 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MQRNEQLNNQKLEALEATAQLQLSTDSSISPATRLTLTYSTIKTQRIVVDSEQNRIIFSE RNQLPADQIRKIVVDCHATLENVGGRKITFWQQDGRNFTIKTKNYACWDAEWFTLLQNLH IAARKLNIPLEVDIPPNRPLHIFSVNDEKERAS >gi|333606775|gb|AFDH01000052.1| GENE 45 45092 - 45589 259 165 aa, chain + ## HITS:1 COG:no KEGG:HMPREF0868_0528 NR:ns ## KEGG: HMPREF0868_0528 # Name: not_defined # Def: hypothetical protein # Organism: Clostridiales_BVAB3 # Pathway: not_defined # 1 165 1 163 163 100 37.0 2e-20 MGIMACFLSLNDALADEVAQLDNAHIIEKIEELMEKQRCPVYEMDKLWDGLHYLLTGNSA SQPIEDHPLSEAIVGVHVLDTEEFVSAIGSDELPRILKALHSVDRTVLKQHFNPADFRSK QIYPDIWVDDEAEERFTELITELNQLTHFYEQSLAQGHDILISIY >gi|333606775|gb|AFDH01000052.1| GENE 46 45717 - 46193 221 158 aa, chain - ## HITS:1 COG:no KEGG:Plabr_3551 NR:ns ## KEGG: Plabr_3551 # Name: not_defined # Def: hypothetical protein # Organism: P.brasiliensis # Pathway: not_defined # 1 150 2 151 154 89 34.0 4e-17 MKDLIKEYALGYAMLRDAIEGLTEEELRFKPAPDKWSIHQILIHVTDSEISSTSRLKKVL AEDEPTLKSFDQDAWASNLGYDLLDREQYLLLFKMLRSSMQTILDNLTSEQSERVGVYID QGRFTFKQLMEFRVEHVCNHLAQIERVKKAYHDEAKET >gi|333606775|gb|AFDH01000052.1| GENE 47 46946 - 48118 124 390 aa, chain + ## HITS:1 COG:SA2230 KEGG:ns NR:ns ## COG: SA2230 COG1680 # Protein_GI_number: 15928020 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Staphylococcus aureus N315 # 1 382 104 492 498 125 24.0 1e-28 MGILLMEEQGLLSMSDPIQKYLPWFTLKYQGKHVDMQSITLNNFLHHTSGLTNGSHSQNI PQGNTPDMLQKTVEMLVDSELSFYPGKQYDYGTVNYDVLGLVIEIVSGQSYEDFMREQVF QPLGLHHTYVYKEDAQATGQLAQGYRSSFFMTTPYNAPDYSGNKPAGYIISCTKDMARWM GIQMGIVQDIPEIFHTVIEKSHQGDMSVPAVNEMYYAAGWSVNANQTIIEHPGGNPNFGT EVAILPNERTAFCLLTNGANINRSMVLKVKDILDGNLTQSYEISGTQLLDIILSSTTIIL CLLAVLFFLLGLRRRKTNERQPMTKKRIIVTATLLIATIVQCIMCCALDWSTILIWQTYS VLTALISSALLTTSITWFVYTHRYNASLRK >gi|333606775|gb|AFDH01000052.1| GENE 48 48442 - 48984 404 180 aa, chain - ## HITS:1 COG:no KEGG:Sterm_0139 NR:ns ## KEGG: Sterm_0139 # Name: not_defined # Def: hypothetical protein # Organism: S.termitidis # Pathway: not_defined # 4 180 6 171 171 134 42.0 2e-30 MRMPSDSELTLLFDGDGRQLQQFIEKHHEKLKRYQLMDDENELADEIAIKEQIPIVFAFV YSVTVDWGEDDEEIVRLFGKRLPDETVEVTSTDKGLDVTYNGQLHSIALTLTGNDRYITI RGIQELIRDKYEIRLFEASYLSDTHDFLILPKRQWEELDARYPVRSREIFRVIDDELDFP >gi|333606775|gb|AFDH01000052.1| GENE 49 49580 - 50959 902 459 aa, chain + ## HITS:1 COG:CC0208 KEGG:ns NR:ns ## COG: CC0208 COG0693 # Protein_GI_number: 16124463 # Func_class: R General function prediction only # Function: Putative intracellular protease/amidase # Organism: Caulobacter vibrioides # 56 327 20 280 329 126 27.0 1e-28 MKTLLRIIIYLIVFVVVVGGTGAIGYVNTMNAGMSVYDKAAPSLTDVKVPKYDANKPTVA VLLANEVTEVFDFLVPYEMFAMTEAYNVYGVAPDRKIKSLTGGLDVVPHYSFDEMDVMLG KSPDIIVIPFMPILDEKKYAPIREWIRKHSGTKTTLISICNGAENLADTGLLNGKSAATH WGDIDRLIKNYPEIQWVKDRRYVPQGNLVSSAGLTSGIDAVLYVISQQLGEAAAKKVAGE MNYPSYDYVTNPQMKPFVAGLSDITYVLNNAFQWNKVKAGVLLYNGADELDLSAAFDTYA ASGTTTTLTVSSANEPIVTKHGLNLVARYQIKDVPKLSKMIVVGADAESTAAEDINQWKS SGNSAKLLFLHRDAANRFAMDPAFEDLAGQEDIQTAKFAAKRLEYRATDHLKLEGSSFSF EAFGLPVLLGVLSLLIAFFIDRRFIRRKKGSSADISASR >gi|333606775|gb|AFDH01000052.1| GENE 50 51102 - 52241 113 379 aa, chain - ## HITS:1 COG:CAC0527 KEGG:ns NR:ns ## COG: CAC0527 COG0577 # Protein_GI_number: 15893817 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Clostridium acetobutylicum # 8 377 486 861 863 129 26.0 1e-29 MAQAPIPYDVSVSVNGADPENMKPLTNELMSVKNATTKVKTQIFTAELSLKENEVTTDIT SRLTPYQGTYEMSANIISLDDASFTSYLQSAGINEKKLEVGDTVSAVLVNRFTLKDKHIF TDISQLTVTEGTELPFNVNPLDGTKTQGKVRIASITDKRPPNMFRYQETPSTVTLIVSEQ GFDKLRQELDNDKLSSLISSEVQFTTVQSAELEKETISILNEYPNVDAYTTNLIEIRQNE KDRATVISVFLYGFVILIGLICTANIINTISTGMALRKREFAMLASIGMTPKSMKRMIRY EGLFYGMKSLIYGLPVSLCVIFIIYKILSRNFSFTFTLPWDAFLLAGMGVFFIVGTTILY ANRKQKEQNIVESLKSENS >gi|333606775|gb|AFDH01000052.1| GENE 51 53705 - 54388 327 227 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 2 200 3 199 223 130 35 3e-29 MEILRVEHLTKTYGKGEAAVTALDDISFSVQKGEFVAIIGPSGSGKSTLLHILGGVDTPT SGKVIVDQTDIYDMDETKLAIFRRRQIGLIYQFYNLIPVLNVKENITLPLLLDGREENRD NLNSIVEVLGLGHRLKHLPNQLSGGQQQRVSIGRALINSPAIVLADEPTGNLDTKNSEEI VKLFKRFHRERDQTLILITHDENIALQADRIISIQDGRISRDEVNRR >gi|333606775|gb|AFDH01000052.1| GENE 52 54473 - 55084 72 203 aa, chain - ## HITS:1 COG:CAC0525 KEGG:ns NR:ns ## COG: CAC0525 COG0642 # Protein_GI_number: 15893815 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Clostridium acetobutylicum # 3 200 133 329 329 153 41.0 2e-37 MFVMADLLNSPSLPQDKREEFLVNIMNQLNRIEWLVTSLLKLSKIDVHSVAFKKEIVSVK KMLNKALEPLLIPMELKNQQLSISCDENLFVAVDENWTVESILNVIKNGIEHTPVGGEIA ISCKETPLYTQIIIADSGEGISPEDAPHIFERFYKGKNAGPDSIGIGLAMSKTILQSQGY DIGMESQPGIGTKFIIKFFKQII >gi|333606775|gb|AFDH01000052.1| GENE 53 55467 - 56153 174 228 aa, chain - ## HITS:1 COG:CAC0524 KEGG:ns NR:ns ## COG: CAC0524 COG0745 # Protein_GI_number: 15893814 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Clostridium acetobutylicum # 3 224 4 222 228 219 49.0 2e-57 MKVLIVEDDKTIADGLHYSLYSEGYEVSICENKQKALDIIRQKSFDIYLLDLTLPDGSGY EICEYVKENQNAPVIFLTACDEEIHVVRGLDMGADDYITKPFRIRELISRMKSSLKHYQK ELSSTDIMKIGNIAVNTKLAKVYKGTEEVVLTSLEYRMLLTFINNKGQVLSRNQLLEGIW DLEGNFINNNTLSVYIKRLREKLEDDSQNPKIIETVRGLGYRMGGRHG >gi|333606775|gb|AFDH01000052.1| GENE 54 56539 - 57135 216 198 aa, chain - ## HITS:1 COG:mlr2503 KEGG:ns NR:ns ## COG: mlr2503 COG0262 # Protein_GI_number: 13472266 # Func_class: H Coenzyme transport and metabolism # Function: Dihydrofolate reductase # Organism: Mesorhizobium loti # 1 198 9 207 224 199 50.0 4e-51 MRKIIVLEHVSLDGVIQAPGGPDEDNSGGFAYGGWVAPYSDEILGTLLSRQMNMPFDLLL GRKTYEIWAPYWPKHADVWPGANKATKYVTSNTLTSVEWKPSVLLSEDIVEKITQVKQQQ GPDLHVWGSSDLIQTLMKYDLIDVFWLMIYPVTLGSGKRLFAGGTIPAAFKVTESKVTPN GVIVVNYERAGEIESGGF >gi|333606775|gb|AFDH01000052.1| GENE 55 57598 - 57945 95 115 aa, chain + ## HITS:1 COG:no KEGG:PPSC2_c5205 NR:ns ## KEGG: PPSC2_c5205 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa_SC2 # Pathway: not_defined # 14 115 27 128 221 143 66.0 3e-33 MLFQDCRGLRAMRFKYNKSRRKMIKPLGSFTAEIRFLSHSSNIEGSYLEFDTNSRIINTH SGKVYWEISLSNFRHKGKVWNLAKEATRERELAEIITLIQNKVAPLMDKHETNLD >gi|333606775|gb|AFDH01000052.1| GENE 56 59845 - 59925 80 26 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSSSLDILRQSNEYPVVFVGSGPIGT >gi|333606775|gb|AFDH01000052.1| GENE 57 60144 - 61718 1221 524 aa, chain - ## HITS:1 COG:all4183 KEGG:ns NR:ns ## COG: all4183 COG0488 # Protein_GI_number: 17231675 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Nostoc sp. PCC 7120 # 3 511 1 511 564 308 35.0 2e-83 MSVIRLENVTKKYEGSMIFRDIYFRVMQGERIGLIGRNGAGKSTVFKLIMGKEEPTSGRV EINPQLKIGYFSQFSELSGSLSVQQELEMCFEQVALIERELLEVGDKLGLVTDNNEMERL LARQAELFEQMDHLDGWNVSVEINTVLTKLGFNDRSRNQPIDELSGGWRNRAALAKLLIE LPDVVLLDEPTNYLDMEGIAWLEQWLYRFKGAMILVSHDRQFIDKVVTRTIEIENYHFQE YEGNYTDYVRKKKMRKKELDRQFEWEEELLLMESEAIDDRASRKSASKDRLTRKLADNKK RIEPHPVNVLITDIYERLRFPDKLCEVKKIGQTYEGRQIFEHVSFDIQKEDRLVIAGPNG SGKSTLIKTLTGAEKPESGEVIWEKGVSYAYFNRMWEELDPKDTVSHAVNTYGLGLDAPR KKVAKFLSMLQFSEADLSKEIGNLSGGQKARVALAKCLLSGAAVIILDEPTNHLDLMSIQ VMEQALIHFPGAVITVSHDRFFIDKIGTKMLTFDPVTGVTEQSL >gi|333606775|gb|AFDH01000052.1| GENE 58 61764 - 62369 456 201 aa, chain - ## HITS:1 COG:BH2189 KEGG:ns NR:ns ## COG: BH2189 COG0265 # Protein_GI_number: 15614752 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain # Organism: Bacillus halodurans # 4 193 79 261 264 120 39.0 1e-27 MFGSRELSSQAEIQSYKEAVVTVSTDNGKGTGFHINGGYIVTNYHVIEDNGYIIVKFPGQ SQIYKAELSGSDPDLDIAILKVDIGDQRLPFIEVERDNKQWEPDEQIYVIGNPLHFTQIA IKGAIIGLVPIQGRQTPVMALDAPVYNGNSGSPVINKRGKAIAVVFATADVEHQDQMIEA GLAVPIADMETLLRTSLPPVE >gi|333606775|gb|AFDH01000052.1| GENE 59 62859 - 64598 533 579 aa, chain - ## HITS:1 COG:L73239 KEGG:ns NR:ns ## COG: L73239 COG0488 # Protein_GI_number: 15673044 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Lactococcus lactis # 1 503 3 503 635 194 30.0 4e-49 MIKLDNLSFSFPQKELFNNISFTLEEAQHCAFIGTSGSGKSTLIDILMDPERYLFDGKLE MDPDCTIGYVSQFSELDNTKETTVFEYIGEPFIKLQNEIQSICTEMETSTDIEPLLEKYQ FALDALDAIGGDDFESNIHKQLNVANLMKRRDSKVADLSGGEFKLIQVMKEMLNRPDILI MDEPDVFLDFENLNALKKLIHSYKGILLVVTHNRYLLNHCFNKIIHLENREIQEFDGRYI EYNFSLLQTKMELQELAVAEQEEMERNDTIINNLRVIATYNSDASRGRALKARVRFQERL EARRIKAPFVEIKQPNISFGVDNEMEDAIVVSVHHYSVGFDELLLDNVNFEIKSTDKVAI IGANGTGKTTLLRDIFKNNHASIEINADVKVAYLSQLQGEMLKDANTILEEFFDAGFKTY DEIGLYLSNYGFEGETLSQKIESLSGGEKNLLQLAKVSASKANVLLLDEPTSHLDTYTQL ALEKAIEKFKGAILMVSHDFYSVVNGMDYVLIIDDKTIRKMTLPKFRQMIYESHFDKDYL ETEQKKKSVEMKIELALKNTDFELAKGLVEELEELIKWL >gi|333606775|gb|AFDH01000052.1| GENE 60 64892 - 66076 577 394 aa, chain + ## HITS:1 COG:no KEGG:PPE_00244 NR:ns ## KEGG: PPE_00244 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 74 393 226 552 553 259 42.0 2e-67 MTITESNRLSELSIEECQGLIAGCTEEAVNSPFQINYGNEVRSKVRLFLSELTPEEAWLL ELNIGLFLLRKQSTDRHSGYFAQVAASETIDTIEAHLNSGLPPEIAVKHQGRLLETAVYI RETVKANAWFPPAYLDIYVELWLILVSSDADSPRLFKEELSHLTDGFGKENKLFPLVARA WIHFWLQEDQAAWRLLEAAERHRLNPGHVFRFLRVLEEAGEWIRLEAWLSHCATERVGRS PGSLDTYRRYWEAVVGQLPEAERNMWSAITSLLPYSSSLYEESLMRFGRWRQWVDYQLSL GSDPLDFRAKDLQPIEKEAPEALLPFYHQGTEKYVLLRNRHGYKRAVKLLKRLAKLYKKL KREQRWDVYIETFVSRHSRLRALQEELRKGKLIP >gi|333606775|gb|AFDH01000052.1| GENE 61 66073 - 69078 2451 1001 aa, chain + ## HITS:1 COG:BS_ywqA KEGG:ns NR:ns ## COG: BS_ywqA COG0553 # Protein_GI_number: 16080681 # Func_class: K Transcription; L Replication, recombination and repair # Function: Superfamily II DNA/RNA helicases, SNF2 family # Organism: Bacillus subtilis # 39 994 35 917 922 682 41.0 0 MTTTIDNLDTIAVRMVLTSHGDALFFADPDSLREWTGLQLKHRLFAWHEPSFYGTELELV KVGELEAIVLPAEEVIPFFASGPLLAHMEWKWEDDAVRLAELAPLLAECLEKRLYAPDLA AYRSGSLRWSWDAAAVGATFGQARRDELDLKSGSWSDEARDGLKAAFSAAVMSRFYGTEP DEADLRREFPALFAHENAAAATAGLDDESWLVQIGWKADVAPFRPLLQLLEPWEGDEHSR WRLRFVLQDKSDPAKLRRVRLGDDGSAVGKWPDAWAEAIRSRSDGWLQRLQASLPHDRLS RGEDVLGKPLDDEAAWRFLNEDSRRLLEAGWQVLLPAWWEAASRKKPRLRAAVQSEDESK ERGGGKSLFGLEAILSFNWRISIGGADLNEEEFDELLARGERLVKFRDRWIVLDPALIAQ IRRMMEGMDKSQGLSFQDVLQLHLLSQAETDAGADGGVTDAGPETFGADAARVELDVELN AHLTGLFAKINQQSEWPRLDPPAGLRAELRSYQQDGFTWLAFLRRFGLGACLADDMGLGK TVQLIAYLLYAKEQADEGMGLPSLIVCPTSVLGNWQKEISRFAPSLRVAMHYGSGRKSGD AFRNEARSVDVILTSFATASLDQETLAGFQWGAVCLDEAQNIKNAGTRQAAAVKSFPALH RIALTGTPIENRLAELWSIYDFIVPTYLGAAKSFQERFASPIEREQDGRRTAELKRLVKP FMLRRKKKDPAIQLDLPDKNEMKTYVPLTSEQAALYDNCVKELLEKLKKLDGIQRKGAIL GALTRLKQACDHPALLNEDMGTELEDGPLHTEAIVARSSKLERLLAMVKELREADERCLI FTQYIGMGKMIQDVLQRELDEPVLYLNGSTPKAQRDRMVERFQSRDLPPSEQPNVFILSL KAGGVGLNLTAANHVFHFDRWWNPAVENQATDRAYRMGQTRDVQVHKFISLGTLEERIDE MLVNKQQLSDNVISSSEGWITELSTDALRELFSLRRDWSRD >gi|333606775|gb|AFDH01000052.1| GENE 62 69806 - 70096 77 96 aa, chain - ## HITS:1 COG:no KEGG:Ccel_2678 NR:ns ## KEGG: Ccel_2678 # Name: not_defined # Def: AraC family transcriptional regulator # Organism: C.cellulolyticum # Pathway: not_defined # 1 83 128 210 284 80 42.0 3e-14 MNYRIESKGPFEMFGAYGLVNSDPQKVYAEVAQFRQQCDVDGSVEGMNGLLGRFSNTILH AALYDHTGTSFKYMVSYFYQKGLKFRRHLPNFLFQH >gi|333606775|gb|AFDH01000052.1| GENE 63 70754 - 71134 145 126 aa, chain - ## HITS:1 COG:no KEGG:ABC1020 NR:ns ## KEGG: ABC1020 # Name: not_defined # Def: hypothetical protein # Organism: B.clausii # Pathway: not_defined # 1 99 100 198 202 122 61.0 6e-27 MDADKELHGLYHNDFRLLNGKLLEHYGFRDELRKTLYYIPTIIDLQEVMSQDVEKFIPYV WGDMDYEKEVVHQKLNVFTFDQIVGYIETSVDLGLLNLKQAAVLHRIPLLANGRLTPILK EGELRR >gi|333606775|gb|AFDH01000052.1| GENE 64 71500 - 71979 590 159 aa, chain - ## HITS:1 COG:BH4007 KEGG:ns NR:ns ## COG: BH4007 COG1576 # Protein_GI_number: 15616569 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus halodurans # 1 159 1 159 159 223 71.0 2e-58 MHITIASVGKLKEKYLVNGIDEYVKRLGPYAKVQLVEVPDEKAPESMSPAEEQQVRAKEG ERLLAKLAPDAYVVALAIDGEMWTSEQLAGSLDKLATYGRSQVAFVIGGSLGLSSEVLRR ADAKLSFGRMTLPHQLMRLVLVEQVYRAFKINRGEPYHK >gi|333606775|gb|AFDH01000052.1| GENE 65 72360 - 73898 1634 512 aa, chain + ## HITS:1 COG:BS_gntK KEGG:ns NR:ns ## COG: BS_gntK COG1070 # Protein_GI_number: 16081058 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar (pentulose and hexulose) kinases # Organism: Bacillus subtilis # 2 507 3 507 513 513 48.0 1e-145 MTYFMGIDIGTTSTKTIITNEKGTLLGAGEAGYPLAVPQPSWAEQDSDLMFEAVLQSIKE AIQRAGIDGKQLEAIGFSTAMHSVIPMDADGRPLMNSIIWADNRSVAQVQRLKDENLSSM LYHKTGIPIHPMTPLPKIMWLKEERPDIFEKAVKYISIKEYVLYKFFGRYVVDHSVAGGT CLFNLNTMSWDPDALRIAGIREDQLSELVPTTHIMRGMNREFADLLGLDPEVAFVVGAAD GALANLGVGAVEPGVVALTIGTSGAVRTVVPKPLTDAKERTFCYALTENHWVIGGATSNG GLMLRWFRDEFSWPEVEEARRTGRDPYDVMIAAAKEVAPGSEGLLFLPFLSGERAPYWNA DARGSFFGIGLHHKRPHFIRAVLEGILFAVYGIGIALRDLAGPATEIRASGGFARSPEWR QIMSDMFGYPVHIPKSHESSSFGAVVLAMYAVGALERLEDVNKLIPITERQEPNIEISPT YIELYYLYDRVYRKLEQEFSIIAEYQRRTTSK >gi|333606775|gb|AFDH01000052.1| GENE 66 73982 - 74356 92 124 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVPSTAFFIFVLFGVGILYFKQDDSTEAKRSANRYLTAVIKHNAEAVEQNVVYEVPLTSR ERSDFKNYIWTSDIRDFEIKDAVLSEPGKYEMRVLIMKEASQEESRITVVKADSKWKVLI KKPV >gi|333606775|gb|AFDH01000052.1| GENE 67 74552 - 74719 190 55 aa, chain - ## HITS:1 COG:no KEGG:PPE_04907 NR:ns ## KEGG: PPE_04907 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 1 55 18 72 72 75 67.0 8e-13 MYSVCKEHLELAIDVFVDEYEDAPDIVDLGKVKFAEWEPPAHCEHCKEKPEYLVV >gi|333606775|gb|AFDH01000052.1| GENE 68 74739 - 75977 1416 412 aa, chain - ## HITS:1 COG:BH4022 KEGG:ns NR:ns ## COG: BH4022 COG0265 # Protein_GI_number: 15616584 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain # Organism: Bacillus halodurans # 76 408 63 402 406 280 49.0 3e-75 MSLFDDEFYSTKQRKDRRKQEEGGWSKGKPFASGDRPLAGLRGLPDLRSRTVWLAGGAGA AVMLVVVLLVQALAGTGSAKPAAMSAKQMEDSYNNAVVQAAERVKLAIVSIVNLQPNDKN ELKQTGIGSGIVFEKNGSKVRIVTNYHVVDGGKQFEVYTASGEKKKAELLGKDQITDLAV LETDASNLTSIAEFGDSASLKAGETVIALGNPLGLGFSPTVTKGIVSSPKRSIPISFAMD GQYDWEMELIQTDASINQGNSGGALVNLNGQVVGINSLKISDMGVEGLGFAIPIKDAEPV IRSLIDNHKVIRPLMGVSTQELQLFQGTEELKLPADVKSGLIVIEASGPAKSAGLKSEDV IVAINGKKIETTVQLRKFLYKESKIGDKIEVAYYREGKKQKTELTLAEAGEN >gi|333606775|gb|AFDH01000052.1| GENE 69 76151 - 76363 273 70 aa, chain + ## HITS:1 COG:no KEGG:PPE_04911 NR:ns ## KEGG: PPE_04911 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 1 69 1 69 69 65 46.0 6e-10 MNNRIRTHLDEVQLIGKLADLKEDHYRNSLILTALIDVLIDKGVLTTQELQNRMDKLDSS FSPHPTPPIS >gi|333606775|gb|AFDH01000052.1| GENE 70 76332 - 77138 1005 268 aa, chain - ## HITS:1 COG:BH4023 KEGG:ns NR:ns ## COG: BH4023 COG1235 # Protein_GI_number: 15616585 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily I # Organism: Bacillus halodurans # 1 260 1 259 264 293 53.0 2e-79 MGLRFTVLSSGSTGNATVICDGETKLLVDAGLSARRVEQLMKEREVSGDQIDAILVTHEH SDHIKGLGAIARKYDLPVYANTKTWEALDKHIGTIAEPNRRIMETGTEEYFGNIRVESYG ISHDAAEPVGYCFHCGGQKLAMATDLGYMSTKVKDVIGDSDAIILEANHDIEMLRMGRYP WNIKRRILSDLGHLSNEAAGEALLDIMTARTRAVYMAHLSQNHNLMDLARLTLNSVLEDR GVSLKERNIRLMDTYFDRPTKWEELGAD >gi|333606775|gb|AFDH01000052.1| GENE 71 77184 - 77948 812 254 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_6252 NR:ns ## KEGG: Pjdr2_6252 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 1 238 1 238 251 190 41.0 5e-47 MNWGRAKTILILSFFFLNVVLGYLVWTGKAKQTELATDMTGVLEETNKLLKGKSIQLSHE LPKEAPKLKEITFKFVESYQPNVTLKLQYPFKIASLLNRISPKDDLPKTDIPKLDAYKHD PILSKKGMYVLNQMYNEYPMFDVQLKLYETDAQITSYRQAYVEVESGGEDKEQKVIPAYI AVRSLVEKFLLDGSVITDVRLGYHGQLFDSQTQYMVPNWRVTINNGDIYYVHAFNGAVEM QSASAEEAAADTKK >gi|333606775|gb|AFDH01000052.1| GENE 72 78050 - 79336 1561 428 aa, chain - ## HITS:1 COG:BS_yycH KEGG:ns NR:ns ## COG: BS_yycH COG4863 # Protein_GI_number: 16081091 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 3 418 4 432 455 83 20.0 6e-16 MIEKLKSVTLTVLILLSLLLSYLLAYSTPNYDPLPPSEYISSELEGTKAKLEDLLFPDQI VLHFGNQQHTVLYPDSTSYSTIFESVKQRKMERFRKVTLNQERTNWDEIREKQEGVEVRF RDGLPLSVLQNTFQIKGDIPDDTELITRIWIFASSDKKSAATYLFTDSSNTAFEVLGADF TAKDVENFTAIAGTNPPYAAASGGEFYLPVNPIPATSYDFGYKEFPTEQLKSSLFADPSL TRNLKDRDGSQIYTDAKRGLQINQEKKWMKYTDPLAVTDSKNSIKENLDAGVQFINQHGG WNGTYSISKPQQQHAFSNQMFVFRQVYDAFPILTEQKEGYGAIHITLQKGVVSNYERSVV YSDLKIINQQKTELIGGEALNAKITNHPKRYNIVNVFPAYRPTLGVKTVNLSPVWAIEFK DGTYEFFR >gi|333606775|gb|AFDH01000052.1| GENE 73 79333 - 81165 2229 610 aa, chain - ## HITS:1 COG:lin0316 KEGG:ns NR:ns ## COG: lin0316 COG5002 # Protein_GI_number: 16799393 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 1 607 1 608 610 457 44.0 1e-128 MKVIRFFQSIQAKLIIIYVLLILIAMQLIAAYFYQTLDSHYKNEFRDSINSQATLIAGLV ESQYLNEPRNSDTKNLSEELTYFVNSLFAPGNTEIQIIDAGGVVLSTSLEANKQIVNQKT TKTEVTRALQGIRDNDRMFTDVDNTRKFATAKPIGSGVRVLGAVYIVSSMEDLYKTMSSI NRILIVATLIALAFTAGLGVILSGTITKPIKEITQQATAAAEGNFDQSVKVYGKDEISQL GHTFNFMMNRLKEAIFINEEEKEKLASILTNMNDGVVATDEAGQIILMNRRAMQILQVKE EHSAQRHISELLGLTREEIDQYVHGERNTTLIDVPLPDDEDVQTVRVTFTTIHRRGDGVT GAIAVLQDVTEQEKLEQSRREFVANVSHELRTPLTTIKSYLEALEDGAMEDKQLAPRFLS VTRNETERMIRLVTDLLHLSRLDSKQALLTKEQTDIADMLEEVADRFSFQLRQKSIRIRI VAEPGIRPVALDRDKIDQVLDNLVSNAIKYTPDEGAITIYARMAEGDQLEISVQDTGIGI PKKDQPRIFDRFYRVDKARSRNMGGTGLGLSIAREIVKAHGGAMSLESEPGSGTKVTFML PVLPEEENAS >gi|333606775|gb|AFDH01000052.1| GENE 74 81167 - 81901 888 244 aa, chain - ## HITS:1 COG:BH4027 KEGG:ns NR:ns ## COG: BH4027 COG0745 # Protein_GI_number: 15616589 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Bacillus halodurans # 5 237 3 229 236 313 67.0 2e-85 MFGTNGKILVVDDEQPIADILKFNLEKEGYQVVCAYDGGAAVELAFSERPDLILLDLMLP VKDGMDVCREIRARLNTPIIMLTAKDTELDKVLGLEMGADDYVTKPFGNRELLARVKAHL RRQSKTTPLGQAEPEPEEANGIRLHGLFIDSDMYVVYRDGEPLDLTHREFELIHYMAKHP GKVMTREHLLQAVWGYDYYGDVRTVDVTIRRLREKLEADPSKPEYIVTRRGLGYMMRGTK NGGF >gi|333606775|gb|AFDH01000052.1| GENE 75 82049 - 83563 1417 504 aa, chain - ## HITS:1 COG:BB0262 KEGG:ns NR:ns ## COG: BB0262 COG0739 # Protein_GI_number: 15594607 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane proteins related to metalloendopeptidases # Organism: Borrelia burgdorferi # 376 502 285 416 417 105 45.0 2e-22 MKGFKAVDWARKLWNQSRAQWHSLTGNKAEPSTELAAGPAVRGKGFFLYSVSSIAVIGFL TVSGQQYVKANLADIYPVKVGQETLGYISSKEVLQEYKQEREEKLEKQYPDVHMALPDIE EPKPEKAFMKKTDDQQVLALLDEKLKPVASGVELVIEGKTYAIVKDQATADRVLAEIKKP FEQKEKESKVAVLSADGSPSAAPATVEKVEFVQQVKTEEAVDIQPQDVMKPEELIAKIKT GGVQPTKYTVVAGDCVGCIAQKLNIPKQVIYDKNPWIHDDMIREGDVLDLTVIQPALSVK TVEKMVENEEVHFETEVETDPTMKEGIVETISPGKNGLKQVTYELTKINGQLTDEKIVGE DIVEQPVTEKVRKGTKVVKGEGTGTFAWPVLSQSITSTFGTRWGKMHKGIDIVGNHTIMA ADNGKVVSAGYKSDYGNYVLIDHMNGYETMYAHMSKVETTAGTIVEKGEQIGIMGSTGDS TGVHLHFEVHKGGSLENPLKYLNR >gi|333606775|gb|AFDH01000052.1| GENE 76 83771 - 84496 582 241 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_6257 NR:ns ## KEGG: Pjdr2_6257 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 3 239 8 224 224 89 28.0 9e-17 MKWLGRLGRWTAGAVVMSFLSIFTTYVIVTTMVDEVLKQFQLPPIGSKLSFSQITGKLGE QFGIGAIGKGGSVNDRVERIAASSSKPSPSPSPTPSATPGGAEKPVTGSLDGSGTPSPSS SPVQGGVSSPEPSGMPDAVAVMGELKEGQASPDPKDAQKRDVVMSTDDFSKKKDALSSGD KQKIFSILVAKLPAEEVQKLSAMVEDGITAEELKEVDSKLKKYLNPAEYEQLSGILKKYG G >gi|333606775|gb|AFDH01000052.1| GENE 77 84788 - 86074 1497 428 aa, chain - ## HITS:1 COG:BS_purA KEGG:ns NR:ns ## COG: BS_purA COG0104 # Protein_GI_number: 16081094 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate synthase # Organism: Bacillus subtilis # 1 427 1 427 430 658 74.0 0 MSTVVVVGTQWGDEGKGKITDYLAESAEVVARYQGGNNAGHTILIGGKKYKLTMIPSGIF NHDKMCVIGNGMVINPAALVDELQYIRDNGFSVDNLKISDRAHVIMPYHLLLDELEEDRK GANKIGTTRKGIGPCYMDKAARNGIRIADLMDAGEFERKLRHIVEDKNTLLKQVYGRDGL DADAILKEYLGYAEQLRMFVTDTSVVLNDAIDAGKRVLFEGAQGVMLDIDQGTYPFVTSS NPTAGGVCIGSGVGPTKINQIIGVAKAYTTRVGDGPFPTELSDAIGDQIRETGHEYGTVT GRPRRVGWFDSVVVRHARRVSGITGLSLNSIDVLTGLETVKICTGYKYKGEIIEHYPASL NMLSECEAVYEELPGWSEDVSNAKSLSDLPENARHYLERVSQLTGIPLAIFSVGRNREQT NLVRPVYA >gi|333606775|gb|AFDH01000052.1| GENE 78 86224 - 87579 1415 451 aa, chain - ## HITS:1 COG:BH4029 KEGG:ns NR:ns ## COG: BH4029 COG0305 # Protein_GI_number: 15616591 # Func_class: L Replication, recombination and repair # Function: Replicative DNA helicase # Organism: Bacillus halodurans # 4 447 3 447 454 605 71.0 1e-173 MNEEMFMGRVLPQNIEAEQAVLGAILLDSDSLITAMERMSPDDFYRPAHQHIFEAMIELA EEDEPVDLVTLTARLQNKQQLEEIGGVAYLSELANAVPTAANIDYYGQIVEEKSLLRRLI RTASQIVSDGYASADDVGMMLNDAEARILEISQRRASNGFISIRDVLMEVFERVEFLYSH KGGSTGIPSGFNDLDKMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVGVRAKETVAIFS LEMGAAQLVQRMICAEANVDATRLRSGFLEGDDWEKLTMAIGSLSEADIYIDDSPSVTVA DIRAKCRRLKQEKGLGMILIDYLQLIQGRGKGDNRQQEVSEISRTLKQIARELNVPVIAL SQLSRGVEQRQDKRPMMSDLRESGSIEQDADIVAFLYRDDYYDKESEKKNIIEIIIAKQR NGPVGTVELAFLKNFNKFVNMDRAHQEMQTG >gi|333606775|gb|AFDH01000052.1| GENE 79 87645 - 88088 571 147 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|167462805|ref|ZP_02327894.1| 50S ribosomal protein L9 [Paenibacillus larvae subsp. larvae BRL-230010] # 1 147 1 148 148 224 78 2e-57 MKVVFLKDVKGQGKKGEIKEVSEGYATNFLIPRGLAAAGTNGAVKQVDQQKKAEQKRKDQ EKEDAEVLAGKLNETTVTIKTKAGEGGRLFGAITSKQIAEQLEKAGYKIDKRKILLNDPI RSLGVTKVPVKLHTEVTATISVQVSEE >gi|333606775|gb|AFDH01000052.1| GENE 80 88085 - 90052 778 655 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|85057286|ref|YP_456202.1| exopolyphosphatase-related protein [Aster yellows witches'-broom phytoplasma AYWB] # 68 652 107 696 849 304 30 8e-98 MPKFLSKRWHGQHMVWTFALLGALTIVLFLYEWVLGVAALLASGLVLYFSWKAESAFRHD LNAYLGTITHRVKKSAGDVISELPIGMILYNEEKEIEWHNPFVAKLAKKDSVIGDSLEDV LPSWKPGKEKEKEETHEVEQDGQVYKIWHRPEERLLYIRDVTDYVRLVQKHDEEKIAIGI VLMDNLDEVTQGMDDQTRSIMLARVTGEITEWAHRYGVYLRRTSSDRFLILMNQKALREL EQNRFDILDEVRDLTMEYKLPLTVSVGIASGIEELEELGRVAQTSLDMSLGRGGDQVTVK AGQRISFYGGRTNAVEKRTRVRARVISHALRDLIKESDKVIIMGHRFPDMDSIGAAIGLL KAVQISNKEGYIVLEGINPSIEKLMAMIEEDEKLNRWFITPAQAMQITTQRTLAVVLDTH RASMVAEPKLFNLTHRVMVVDHHRRSEEFFHDAVLVYMEPYASSTCELVTELLQYFNEKM SLDALEATVLLAGIVVDTKQFSLRTGSRTFEAASFLRRNGADPTLIQKMLKEDLQAYIDK AEIMRYTEMMYDHIALAVGEQNHKYSQLMIAQVADTLLNMTGVFASFVICERPDGLTGIS ARSLGAMNVQIVMERMGGGGHLTNAATQLELTPQEAAAKLKQILQEIEEEEGLFE >gi|333606775|gb|AFDH01000052.1| GENE 81 90070 - 90993 1002 307 aa, chain - ## HITS:1 COG:BH4032 KEGG:ns NR:ns ## COG: BH4032 COG4241 # Protein_GI_number: 15616594 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Bacillus halodurans # 13 303 16 307 312 67 25.0 3e-11 MTKKNLQFIGWGLLYILFLLSFMTSYLVITASFLMIPVLILFVKLDAKRFTAFYLGILLV VNLLLGWTGFVVLAISLFLLPPVIVIGTLYKKKAPAHLVITYGTLTFLAEMLLTLVIGFL FKLNFIKKFKTVMLDYLNNMQPAVKGMLPTQGDMQWYVDVLVQIIPLDMILFSLYFIGVT HLIGRRLLNRMGEDIPGMPPVREWKLPKAFVWIYLIAFAADMLFVSATNSLMSALLINLL PLLMFAFAIQAISFLAFVAHYKGWGKLLPVAGTILLIVFMPFLLVLYSLLGVFDVAFPLR ERLFKSR >gi|333606775|gb|AFDH01000052.1| GENE 82 90999 - 91262 81 87 aa, chain - ## HITS:1 COG:no KEGG:PPE_04924 NR:ns ## KEGG: PPE_04924 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 1 87 14 100 100 116 67.0 3e-25 MKWLKTEVVDQVAHLLKGIWEGNLAKIIDGLASLISSVYILGRRLGVSFRSLDEAIMDKM KKHREEGHQLEDWYGDISALEDHLRKR >gi|333606775|gb|AFDH01000052.1| GENE 83 91422 - 91775 243 117 aa, chain - ## HITS:1 COG:BH0377 KEGG:ns NR:ns ## COG: BH0377 COG0662 # Protein_GI_number: 15612940 # Func_class: G Carbohydrate transport and metabolism # Function: Mannose-6-phosphate isomerase # Organism: Bacillus halodurans # 1 109 1 110 113 130 55.0 4e-31 MKISKQNAEHYVWGDGCDGWYLHKGDETIIHERMPPGTSEERHVHERAAQFFFILTGQVV MEMDGEWHELGPQEGLRIAPGTPHCIHNRSHDAAEFLVISKPGTKGDRIPQAELKPD >gi|333606775|gb|AFDH01000052.1| GENE 84 92115 - 92423 413 102 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|167462797|ref|ZP_02327886.1| 30S ribosomal protein S18 (BS21) [Paenibacillus larvae subsp. larvae BRL-230010] # 1 102 1 100 100 163 81 3e-39 MSEQQTSSRPQRSEGGDRPERSERKFTPRRGKGGKRRKVCYFTANKITHIDYKDIETLKK FISERGKILPRRVTGTSAKYQRMLTTAIKRSRTIALLPYTTE >gi|333606775|gb|AFDH01000052.1| GENE 85 92443 - 92925 263 160 aa, chain - ## HITS:1 COG:BH4049 KEGG:ns NR:ns ## COG: BH4049 COG0629 # Protein_GI_number: 15616611 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-binding protein # Organism: Bacillus halodurans # 1 160 1 168 168 174 58.0 5e-44 MLNRVILIGRLTRDPELRYTPAGVAVTQFTLAVDRPFVSSQSKEREADFIPVVTWRQLAE TCANYLRKGRLAAVEGRMQVRSYDNNEGRKVYVTEVIADNVRFLESANSANREEGSYSGG SGGGYGGGGSGSGRNTRDQQQDPFLDDGKPIDISDDDLPF >gi|333606775|gb|AFDH01000052.1| GENE 86 92964 - 93251 381 95 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|192809478|ref|ZP_03038153.1| ribosomal protein S6 [Geobacillus sp. Y412MC10] # 1 95 1 94 94 151 81 2e-35 MRKYEVMYIIRTDIEQEQVQSTVEKFQGIITNGGGEITKHDLMGKRRLAYEINKFRDGHY VLVHFNAEPAVVAELDRVMKISDEIIRYLIVKDVA >gi|333606775|gb|AFDH01000052.1| GENE 87 93496 - 93678 298 60 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_6274 NR:ns ## KEGG: Pjdr2_6274 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 1 60 1 60 60 79 65.0 4e-14 MGEKTQFVPGDKAPNEGRYIEIGENAFHMGINNPEIVHLKKGDSFPDTKNHNRKWKRLYH >gi|333606775|gb|AFDH01000052.1| GENE 88 93696 - 93977 394 93 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|167462779|ref|ZP_02327868.1| ## NR: gi|167462779|ref|ZP_02327868.1| hypothetical protein Plarl_09480 [Paenibacillus larvae subsp. larvae BRL-230010] # 3 88 2 85 87 83 45.0 7e-15 MKKSFTLYGTVFGLLLCLIHYFGHDQDSLYLLFYSLSVPAWFAPMFTNVYEISMGKMFVI YVLTVASWALIGYVIDRFSVVRKERQGRTGGAA >gi|333606775|gb|AFDH01000052.1| GENE 89 94281 - 94517 240 78 aa, chain - ## HITS:1 COG:lin2921 KEGG:ns NR:ns ## COG: lin2921 COG4481 # Protein_GI_number: 16801980 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 60 1 60 65 85 70.0 2e-17 MEKKQYELGDIVQMKKQHPCGTNEMEIIRMGMDIRIKCVGCKHSVLVPRAKFESKLKKVL RSSADKGAEASENGVSGS >gi|333606775|gb|AFDH01000052.1| GENE 90 94522 - 95445 990 307 aa, chain - ## HITS:1 COG:BH2666 KEGG:ns NR:ns ## COG: BH2666 COG0668 # Protein_GI_number: 15615229 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Small-conductance mechanosensitive channel # Organism: Bacillus halodurans # 49 301 24 276 276 190 40.0 4e-48 MTNMGNRLAAITGLQNPEETVTHFVDDIKKYLLDSQQLIKYGATIVEIIVIYVLSRLIIK VADKLVNRMMETREKSPLKFDPRRTATIGKLIHNIISYVVNFITILLILAQVGINLGPIL AGAGVLGLAIGFGAQSLVKDVITGFFIIFEDQFAVGDVIQVDTFRGTVEQIGIRVTRLRS WTGEVHFIPNGNIKQVTNYSINNSLAIVDISIAYESDIDKTVEVLQKTVDRMAEGNENIV SEPKVLGVQSMGQSEIVLRITAECKPNMQVDVQRKMFAEVKKQLDAHGIEIPCPKIVTYF KGERGAI >gi|333606775|gb|AFDH01000052.1| GENE 91 95459 - 95710 410 83 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_6278 NR:ns ## KEGG: Pjdr2_6278 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 5 71 1 67 79 100 73.0 2e-20 MGEWLLIAFDSTQQALRAEMLLEYADIEIDLCPTPKGVTAGCALSIQFPAEDYTEVQRII ETEKVEIRGIYFKKESEYVRMEK >gi|333606775|gb|AFDH01000052.1| GENE 92 95864 - 96478 302 204 aa, chain + ## HITS:1 COG:no KEGG:PPE_04941 NR:ns ## KEGG: PPE_04941 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 12 189 10 187 201 230 62.0 3e-59 MKPFGFSAKPAAEQPASIKLSHSDGSTPAALSAYFSEILKKLPSYQPIVIVCVGTDRSTG DSLGPLVGSNLKRRSGASYSLYGTLDEPVHAMNLSDTITAVETAHRYPFIVAIDACLGQV SSVGSIQVGHGPLKPGAGVNKELPSVGDIHVTGIVNVGGFMEYFVLQNTRLNLVMNMADV IAGSLHHALCSVRRSSPTSALTSD >gi|333606775|gb|AFDH01000052.1| GENE 93 96453 - 96947 582 164 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_6329 NR:ns ## KEGG: GYMC10_6329 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 34 163 36 165 172 119 48.0 6e-26 MGENNIGLPVEPILSVLCLLVLLLLIGMLALWIKLGKLRKQYKKVMNGAGEVNIEQLLVH MQQQIEDQIILQGDTADRLNRISQSMKRMKSKVGIHRYNAFSDTGSLMSFTVAILDEYED GILITGIHSREDTYIYAKPVEKGGSPYLLSPEEKEAINLTLAQK >gi|333606775|gb|AFDH01000052.1| GENE 94 97014 - 98177 752 387 aa, chain - ## HITS:1 COG:CAC2354 KEGG:ns NR:ns ## COG: CAC2354 COG0520 # Protein_GI_number: 15895621 # Func_class: E Amino acid transport and metabolism # Function: Selenocysteine lyase # Organism: Clostridium acetobutylicum # 6 386 2 379 379 353 46.0 3e-97 MTKPFLYFDNAASSWPKPPQVGEAVLRCINEYAANPGRGSHAMAVQASRVVFEARKHAAK LFGFKNPNDLAFGSNTTEALNLAIKGHVKEGEHVICTAVEHNSVRRPLEYLRRTKNVQVT YLETDEFGRINIDALKENIQSNTSLVVINHSSNLLGSILPVADIAQLCREKGICLLVDAA QTAGILPIHVEQMGIDMLAFPGHKGLLGPQGTGGLYIHPRLDLEPLMHGGTGSQSEAIDQ PSVRPDRYEAGTPNTPGLAGLSEGLKFVLQTGVENIHAKEWRQTQRIMEALRDVPDLRLL GPGIGEERTGIVPFVLEHMDASEVAFILDQHYGIAVRAGYHCTPLAHETAGTGKTGAVRA SVSYFTTDEEVDTLIEAVKEIAESVIL >gi|333606775|gb|AFDH01000052.1| GENE 95 98279 - 99139 731 286 aa, chain - ## HITS:1 COG:BS_spo0J KEGG:ns NR:ns ## COG: BS_spo0J COG1475 # Protein_GI_number: 16081148 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus subtilis # 1 281 1 277 282 238 48.0 7e-63 MSKRLGKGLGALIPELEIGEEDKVIEIPLNQLRANPYQPRKHFNEDGIQELASSIKEHGV IQPIIVRTVLKGYEIIAGERRFRASQASGLATIPAVVKKLSDQQVMEIALIENVQREDLN AMEIAIAYQAIIDQFSLTQEELSVKVGKSRSHIANFLRLLHLPESIKQYVSRGTLSMGHA RAIVGVKDDKVKKELTDACINGQWSVRQLEEEIKRREELASEDKEKPKVKDKKKDPYLHQ AEEQLQDHYRTTVRIKHQNYKGRIELMYYSKDDLERLLEMLQGQIS >gi|333606775|gb|AFDH01000052.1| GENE 96 99120 - 99893 466 257 aa, chain - ## HITS:1 COG:BS_soj KEGG:ns NR:ns ## COG: BS_soj COG1192 # Protein_GI_number: 16081149 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Bacillus subtilis # 1 249 1 249 253 390 79.0 1e-108 MSKTIAITNQKGGVGKTTTSVNLGACLASLGKKVLLVDIDPQGNTTSGIGVNKADVEYCI YDVLINDIHPKDATVATKIPNLNIIPATIQLAGAEIELVPTISREVRLKKSLQLVEHMYD YILIDCPPSLGILTINSLTASDSVIIPIQCEYYALEGLSQLLNTVRLVQKHLNTSLQIEG VLLTMFDARTNLGIQVIEEVKKYFQQKVYQTIIPRNVRLSEAPSHGQSIITYDPRSKGAE VYLELAKEVISLEQTTR >gi|333606775|gb|AFDH01000052.1| GENE 97 100325 - 101152 523 275 aa, chain - ## HITS:1 COG:BH4059 KEGG:ns NR:ns ## COG: BH4059 COG1475 # Protein_GI_number: 15616621 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus halodurans # 1 271 1 282 283 303 62.0 3e-82 MKEQLSKLFGFTERSNMDEVKNIPVQNINPSPYQPRTIFDDDRIDELCQTIRTHGVIQPI VVRVRNNTFELIAGERRLRAVKKLGLETIPAIVREFNDSQAASIALIENLQREGLTAIEE AAAYQQLIEMHDLTQESLAQRLGKSQSTIANKIRLLNLSEPVKMALIERKITERHARALL SLDQEELQVKILEEVIAKELNVKQTETRIQFLKEATQIKKSKRVSYSKDVRLALNTIRQS VEMVASSGLNINTAEQDHEDHYEIIIKIPKQHSAK >gi|333606775|gb|AFDH01000052.1| GENE 98 101412 - 102140 420 242 aa, chain - ## HITS:1 COG:BS_gidB KEGG:ns NR:ns ## COG: BS_gidB COG0357 # Protein_GI_number: 16081152 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division # Organism: Bacillus subtilis # 7 240 4 237 239 272 57.0 4e-73 MTDLIQEQFVSHLQPHQLSFSDEQLQQFETYYRLLVEWNEKINLTAITERDQVYLKHFYD SLSLAFYVDMEKVDTLADIGSGAGFPSIPLKIAFPHLKVTIVDSLNKRIVFLNELVKELG LTDVTCVHARAEDAARLQQHRDRYDLVTARAVARLSVLNEFCLPFVKVGGLFVAMKAADA EEEMKEAAFSIGLLKGRLKQVERLELPVEKSVRHFIQIQKTAPTPGKYPRKAGLPLKQPL VK >gi|333606775|gb|AFDH01000052.1| GENE 99 102149 - 104038 1610 629 aa, chain - ## HITS:1 COG:BH4061 KEGG:ns NR:ns ## COG: BH4061 COG0445 # Protein_GI_number: 15616623 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: NAD/FAD-utilizing enzyme apparently involved in cell division # Organism: Bacillus halodurans # 1 620 1 621 632 912 73.0 0 MGYSAGNYEVIVIGAGHAGVESALAAARMGCETLLLTINLDMVAFMPCNPSIGGPAKGHV VREIDALGGEMGRNIDKTYIQMRMLNTGKGPAVHALRAQADKFLYQHMMKETIESTPNLT LRQGMVEELLVEDGVCKGVVTKTGAEYYGKAVVLTTGTYLRGKVIMGELMYESGPNNQQP SVRLSQSLRDLGLELVRFKTGTPPRVHKDSIDFSKTEIQPGDENPRFFSYETKEGTQDQL PCWLTYTTENTHEIINDNLHRAPMFSGAIEGTGPRYCPSIEDKIVRFADKPKHQIFLEPE GRNTSEYYVQGLSTSMPEDVQLKILRSITGLEKVEMMRTGYAIEYDAVVPTQLKPTLETK QVEGLFTAGQINGTSGYEEAAGQGIMAGINAACKVQGKDPVILDRSEGYIGVLIDDLVTK GTPEPYRLLTSRAEYRLLLRHDNADLRLTPIGHKIGLIPEERYQRFMEKKEQIEQELQRL KTTKVRPEPHVQAILEEAGTVLLNNAVDLLTLLKRPEINYSHIEGMLPLPVELSDEVKEQ AEIQVKYAGYIEKQLAQVERLKKMEKKKIPDDIIYEDIHGIATEAKQKLAKIRPVSIGQA SRISGVTPADISILLVYLEHYNQVIAARG >gi|333606775|gb|AFDH01000052.1| GENE 100 104061 - 105437 1155 458 aa, chain - ## HITS:1 COG:BH4062 KEGG:ns NR:ns ## COG: BH4062 COG0486 # Protein_GI_number: 15616624 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Bacillus halodurans # 4 458 4 458 458 525 62.0 1e-149 MISDTIAAIATPLGEGGIAVVRVSGDEAVKLVEPLFRSKVKLSEAQTHTIHYGHIIHPSS GDKIEEVLISVMRAPRSFTTEDVVEINCHGGIVSVKRVMDLLLEQGIRVAEPGEFTKRAF LNGRIDLTQAEAVIDLIRSKSDRAFQIALKQVDGNLSKAIGELRYQLVELMAHIEVNIDY PEHDVEEMTNAFIRERCIQVSSRIDELLRTAEHGKILREGIVTAIIGKPNVGKSSLLNTL AQENRAIVTDIPGTTRDVIEEYVNVGGIPLKLLDTAGIRETSDLVEQIGVERSRTALSEA DLILLVLNSSEPLLPEELAMIEELRQRQTIVILNKTDLPLQIDKDEIEAKFPQGRVVSLS LLEGSGLAELEKAISAIFFEGNLESTDLTYVSNVRHIGLLKQAKGSLREAMEANDAYVPI DMIQIDIRAAWEHLGEIIGDSVAESLIDQIFSQFCLGK >gi|333606775|gb|AFDH01000052.1| GENE 101 105526 - 106143 555 205 aa, chain - ## HITS:1 COG:BH4063 KEGG:ns NR:ns ## COG: BH4063 COG1847 # Protein_GI_number: 15616625 # Func_class: R General function prediction only # Function: Predicted RNA-binding protein # Organism: Bacillus halodurans # 1 202 1 203 207 172 46.0 3e-43 MKKVIATGKTIDDAIKAGLVQLSTTQDRVHVTVLEQPSKGFLGLIGTKEAKVELEKIPDP IEEAIAFLKELFDTMGLAISIDQKQTKEGHLFNLSGSELGILIGKRGQTLDALQYLVNIV ANRFSNAHVRILLDAEQFRDRRKQTLQELAHRLAGRVVRSRKELILEPMNAQERKIIHAE LQSHPSVKTYSKGDEPNRRVVITLR >gi|333606775|gb|AFDH01000052.1| GENE 102 106140 - 106895 397 251 aa, chain - ## HITS:1 COG:lin2986 KEGG:ns NR:ns ## COG: lin2986 COG0706 # Protein_GI_number: 16802044 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YidC # Organism: Listeria innocua # 14 238 20 246 287 213 48.0 2e-55 MIRRTYKYAPLLLLLFVLTGCGTSPTSYPPLDPATAGFFTKYFIIPLSDLLDFFANSIGN SYGISILIVTIIIRLIVLPLTLKQYKSSKRMQEVQPEMAKLREKFKDNPQKQQEETMKLF QKHGVNPLAGCFPILIQMPILLALYQAIVRNPHIFSHQFLWMELGKPDPFYVLPILAAAT TFIQQKVMSAQNPMNKQMQSIMFIFPVMIFVMSMSFASALPLYWIYSNVFTIVQTYFLYG RSPKTKGGQAA >gi|333606775|gb|AFDH01000052.1| GENE 103 107000 - 107347 186 115 aa, chain - ## HITS:1 COG:lin2987 KEGG:ns NR:ns ## COG: lin2987 COG0594 # Protein_GI_number: 16802045 # Func_class: J Translation, ribosomal structure and biogenesis # Function: RNase P protein component # Organism: Listeria innocua # 1 113 1 113 119 101 50.0 4e-22 MEKKLRLAKREDFQKVYRYGKSAANHQFVLYYMPRRENEHFRLGISASKKIGNAVIRNRL RRVLKEIIRLNEERFPGGYDYIVIVRKPAVEMDFHEMEKSIYHVFKRAGLLRKNS >gi|333606775|gb|AFDH01000052.1| GENE 104 107486 - 107620 195 44 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|226315534|ref|YP_002775430.1| 50S ribosomal protein L34 [Brevibacillus brevis NBRC 100599] # 1 44 1 44 44 79 81 6e-14 MRPTFNPNTRTRKKNHGFRKRMSTKNGRKVLQARRQKGRKVLSA >gi|333606775|gb|AFDH01000052.1| GENE 105 108121 - 109461 1097 446 aa, chain + ## HITS:1 COG:BH0001 KEGG:ns NR:ns ## COG: BH0001 COG0593 # Protein_GI_number: 15612564 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA replication initiation # Organism: Bacillus halodurans # 10 443 17 449 449 624 71.0 1e-179 MAASPVYHTKKLSKPSFDTWLKSTRATVFTDTTVVISAPNNFAKEWLESRYAKMIGTTIY EFLGKQVEVKFINESDEKSPVAVQAPPPEIPKEPAAPVQEETFHHMMNSRYTFDTFVIGA GNRFAHAASLAVAEAPAKAYNPLFLYGGVGLGKTHLMHAIGHYVLEHNPRARVLYISSEK FTNEFINAIRDNRGEGFRNKYRSIDVLLIDDIQFLAGKEQTQEEFFHTFNALHEEGKQII ISSDRPPKEIPTLEDRLRSRFEWGLITDIQPPDLETRIAILRKKAKAENLEIPNEAMVYI ANQIDTNIRELEGALIRVVAYSSLSNQDITTHLAAEALKDIIPSSRPRVITMQDIQQKVG EFYGLKMEDFKARKRTKAVAFPRQVAMYLSREMTDFSLPKIGEAFGGRDHTTVIHAHEKI SEALKTDQELFKIIHSLTEKIKNPSS >gi|333606775|gb|AFDH01000052.1| GENE 106 109630 - 110772 961 380 aa, chain + ## HITS:1 COG:BS_dnaN KEGG:ns NR:ns ## COG: BS_dnaN COG0592 # Protein_GI_number: 16077070 # Func_class: L Replication, recombination and repair # Function: DNA polymerase sliding clamp subunit (PCNA homolog) # Organism: Bacillus subtilis # 1 378 1 377 378 382 55.0 1e-106 MKLTILKDYLNESIQHVSKAISSKTTIPILTGIKIDATSEGVTLTASDTDISIQSFMPTE TAELKVIELFQPGSVVLPAKFFMEMIRKLPSQTIEIEVKDHFQTTIRSGSSEVQIMGLDP EEYPLLPQIEESRTIRIPSDLLKTMIKQTSFSVSTNETTPILTGVLWQISDNKLKFIACD RHRLASREINLDLEPGQKFHPIVISGRTLNELSKILPDQNSLIDIVIADNQVLFKMNSIL FYTRILDGTYPDTSKLIPQSFQTELVVGTKELADAIDRAYLLSREDKTNIVKLVMKEDET IEVSSSSSELGKVTEQLQLQKINGDLLRISFNSKYMLDALKVMDSDHIHIGFTGAMQPII IRPEEQQNILQLILPYRTTN >gi|333606775|gb|AFDH01000052.1| GENE 107 110812 - 111027 220 71 aa, chain + ## HITS:1 COG:BS_yaaA KEGG:ns NR:ns ## COG: BS_yaaA COG2501 # Protein_GI_number: 16077071 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 4 68 5 69 71 82 64.0 2e-16 MKEVTIRTEYITLGQFLKLADCIQTGGQAKSFLQEAHIEVNGEIENRRGRKLYSGDKVAV EGCGEFVVSRE >gi|333606775|gb|AFDH01000052.1| GENE 108 111054 - 112172 601 372 aa, chain + ## HITS:1 COG:BH0004 KEGG:ns NR:ns ## COG: BH0004 COG1195 # Protein_GI_number: 15612567 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair ATPase (RecF pathway) # Organism: Bacillus halodurans # 1 368 1 367 371 398 56.0 1e-111 MFVKRLLLDHYRNYPHVEISTDRNVNIFVGPNAQGKTNLLESIYVLALTKSHRTHQDKEL IQWQEDHARLFGEVERKYGMSTLELAISGKGKKAKVNGLEQKKLSQYVGALNVVMFAPED LEIVKGSPGIRRRFLDMEIGQVYPSYLYDLTQYQKVLVQRNNLLKQSYPPSAANSSMLDV WNEQLAAFGVKIMKKRQSFIKKLQSWAEQIHQGITDGKEMLRVEYAPSFADGHFEDESVL LDRFMIKLSQIKEQEMRRGVSLIGPHRDDLLFCINDKDVQTYGSQGQQRTTALSLKLAEI ELIREEVGEYPVLLLDDVLSELDEYRQTQLIQTFQKKVQTFITTTGLESVHLDQLDHAAV FHVSSGSVIDRS >gi|333606775|gb|AFDH01000052.1| GENE 109 112179 - 112427 164 82 aa, chain + ## HITS:1 COG:no KEGG:PPE_00005 NR:ns ## KEGG: PPE_00005 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 1 82 1 82 83 104 74.0 1e-21 MFIHLGGEKIIRSSELIAIFDLSIEKSSKISKQFIAEATRSKKIEIIGEEECKSLVVTQS KVFYSPISSMTLKKRANQLLTN >gi|333606775|gb|AFDH01000052.1| GENE 110 112462 - 114378 1843 638 aa, chain + ## HITS:1 COG:BS_gyrB KEGG:ns NR:ns ## COG: BS_gyrB COG0187 # Protein_GI_number: 16077074 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Bacillus subtilis # 1 638 1 638 638 909 72.0 0 MTLNQNSYDENQIQVLEGLEAVRKRPGMYIGSTSSRGLHHLVWEVVDNSIDEALAGYCTR IDVIVHKDNRITVIDNGRGIPVGEHAKMKRPALEVVLTVLHAGGKFGGDDSGYKVSGGLH GVGISVVNALSSHLLVRVKLHGKIHEQEYRQGKPQYDLRIIGETEETGTTVTFTPDPEIF TETTEYEYEILQSRIRELAFLNKGIEINLIDERTDTSESFMYEGGIKSFVEHLNRNKEAL HQPPIYVEGSKENIQVEVAIQYNDSYTENIYSFANNINTHEGGTHESGFKSALTRILNDY ARKTNAIKESGSNLSGDDVREGLAAIISVKIPEPQFEGQTKTKLGNSEVRGIVDSLFAEK LLEFLDENPAIAKKIVEKGLQASRAREAARKARELTRRKSVLEVSSLPGKLADCSSKDAS ISELYIVEGDSAGGSAKQGRDRHFQAILPIRGKILNVEKARLDKILSNLEIRAIITAMGT GISDDFDITKARYHKLIIMTDADVDGAHIRTLLLTYFYRYMRKLIEVGYVYIAQPPLYKL ERGKVARYAYSDKQRDEIMKEFGEGAKVNVQRYKGLGEMDAEQLWDTTMDPETRTLLQVT IQDAMDADSIFDTLMGDNVEPRRNFIHQHAKYVKNLDI >gi|333606775|gb|AFDH01000052.1| GENE 111 114443 - 116968 1757 841 aa, chain + ## HITS:1 COG:BH0007 KEGG:ns NR:ns ## COG: BH0007 COG0188 # Protein_GI_number: 15612570 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit # Organism: Bacillus halodurans # 1 804 1 804 833 1122 71.0 0 MTEEMRSQVVEVDISSEMRTSFLDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELGMYS DKPHKKSARIVGEVIGKYHPHGDSPVYETMVRMAQDFSLRYMLIDGHGNFGSVDGDMAAA MRYTEARLSKIAMEMLRDINKETIDYIPNYDGEEQEPVVLPARFPNLLVNGSSGIAVGMA TNIPPHNLGEVIDGIQQMIENPDVTPLELMQSIKGPDFPTGAYILGREGIRQAYATGRGS VTMRAKADIEEVNNKARIIVHEIPYQVNKARLIEKIAELVRDKKIDGITDLRDESDRNGM RIVMELRRDVNPNVVLNNLYKHTALQSNFGIIMLALVNGEPRVLNLREMIYYYLEHQKVI IRRRTEYDLRKAEARAHILEGLRIALDNLDEVIALIRSSRTTEAAREGLMTTFNLSHDQA QAILDMRLQRLTGLEREKIEQEYAELLQRIAELKAILADEQLILAIISDELNEIKQSYGD ERRSEITKGEDSIEDEDLIPQEDVVITITHTGYIKRLPVNTYRSQKRGGRGIVGMDTKTD DFVNHLFVTNTHHYLLFFTDRGKVYKLKAYEIPDLSRTARGTPIINLIQIEQGETVSAVI PVQEFSADNYLFFATKRGIVKKTPLDDYINIRKGGLIAINLRDDDSLIGVKLTDGKRHII MGTRDGMSIRFPEDDVRSMGRSATGVKGIQIGSEDTVIDMDVVDEDASVLIVTSKGFGKR TPIAEYRVQSRGGKGIKTLNVTTKNGAVVGLKVVNNEEDLMIITASGTLIRTSISGISEM GRNTQGVRLINIREDDEVATVTHVAKSEESQDDEFNEEDQEQIASEQTDTQVENPEEDTE I >gi|333606775|gb|AFDH01000052.1| GENE 112 117058 - 118131 866 357 aa, chain + ## HITS:1 COG:BH0008 KEGG:ns NR:ns ## COG: BH0008 COG2206 # Protein_GI_number: 15612571 # Func_class: T Signal transduction mechanisms # Function: HD-GYP domain # Organism: Bacillus halodurans # 4 354 3 358 360 200 34.0 3e-51 MRTVSVSQIKAGDKLLEAVNSRFGNALFYKGRILTERDAEILKAFLISTVTIDNGTSNSG QESAGAVASLDIDTKQISSFDLSYDKMLQLLKKAFGLVLGNSALPVLEMRNELHKLIEHI EGYQVLTFTPRQFQLQDFVYHNSIMVSLTSYLLAKWHGLPQKDWMQIALAGLLHDIGNAK IDQALLVKPTKLTPIELEEMRQHTLYGYNVLKPIAALNEGVKLCSLQHHEREDASGYPLG LKSDQIHIYSKVVAVADIFHAMTSVRYHQEATSPYVVLEQLSKDAFGKVDPAIVNTFIDK VTSFHIGTVVKLNDNRVGEIVFSDRSYPTRPWVNINGTIVNLTMERNLYIQEVIEAR Prediction of potential genes in microbial genomes Time: Sun Jul 17 08:53:43 2011 Seq name: gi|333606773|gb|AFDH01000053.1| Paenibacillus sp. HGF7 contig00061, whole genome shotgun sequence Length of sequence - 724 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 723 824 ## COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin Predicted protein(s) >gi|333606773|gb|AFDH01000053.1| GENE 1 3 - 723 824 240 aa, chain + ## HITS:1 COG:SPy0714_1 KEGG:ns NR:ns ## COG: SPy0714_1 COG0803 # Protein_GI_number: 15674772 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface adhesin # Organism: Streptococcus pyogenes M1 GAS # 2 240 54 296 322 188 44.0 6e-48 VNVINLVPAGVEPHDWTPKGRDIKNIGDSQLFLYQGAGFEGWVDDFLKSLKDSKVKPVVA SAGVELLKAGEEAHGHDHGKDEHSHTEEAGKDTDPHAWLSPKNAKKMSENIKNALVEADP AHKSDYEANYSAYAAKLDALDKQYKDSLSGLPKKEIAVSHQAFAYLCHDYGLTQMAIMGL SPDAEPTAQDMKKMREYIAEHGIKYIFFEELVSDKLAKTLAKDAKVETLVLNPLEGLTEE Prediction of potential genes in microbial genomes Time: Sun Jul 17 08:53:50 2011 Seq name: gi|333606758|gb|AFDH01000054.1| Paenibacillus sp. HGF7 contig00244, whole genome shotgun sequence Length of sequence - 27277 bp Number of predicted genes - 15, with homology - 12 Number of transcription units - 9, operones - 3 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 488 - 547 4.2 1 1 Tu 1 . + CDS 623 - 748 59 ## + Prom 2002 - 2061 6.1 2 2 Op 1 . + CDS 2125 - 2691 -116 ## OB3378 hypothetical protein 3 2 Op 2 . + CDS 2774 - 3040 290 ## + Prom 3091 - 3150 1.8 4 3 Tu 1 . + CDS 3232 - 3915 247 ## GYMC10_1054 NERD domain protein + Prom 3996 - 4055 3.6 5 4 Tu 1 . + CDS 4078 - 5553 1254 ## CAR_c18250 putative chromosome segregation ATPase - Term 5571 - 5612 5.4 6 5 Tu 1 . - CDS 5727 - 6557 508 ## Cthe_2310 hypothetical protein - Prom 6583 - 6642 5.6 + Prom 6532 - 6591 8.9 7 6 Op 1 . + CDS 6775 - 7245 175 ## GYMC10_0302 hypothetical protein 8 6 Op 2 . + CDS 7250 - 8953 764 ## GYMC10_0303 hypothetical protein 9 6 Op 3 . + CDS 8972 - 9196 185 ## 10 6 Op 4 . + CDS 9193 - 9741 199 ## AXYL_06346 hypothetical protein 11 6 Op 5 . + CDS 9738 - 11303 372 ## COG0464 ATPases of the AAA+ class + Term 11376 - 11424 12.7 - Term 11739 - 11783 2.0 12 7 Op 1 . - CDS 11884 - 12381 388 ## COG2318 Uncharacterized protein conserved in bacteria - Prom 12479 - 12538 2.5 13 7 Op 2 . - CDS 12540 - 13778 513 ## COG0477 Permeases of the major facilitator superfamily - Prom 13808 - 13867 7.0 + Prom 13793 - 13852 7.3 14 8 Tu 1 1/0.500 + CDS 13895 - 14797 416 ## COG0583 Transcriptional regulator + Term 14965 - 15001 2.2 15 9 Tu 1 . + CDS 15349 - 27277 7109 ## COG1020 Non-ribosomal peptide synthetase modules and related proteins Predicted protein(s) >gi|333606758|gb|AFDH01000054.1| GENE 1 623 - 748 59 41 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKHMMLIPLILKRKKGEEEAKIILFFIFSVAFVIQLTFQMH >gi|333606758|gb|AFDH01000054.1| GENE 2 2125 - 2691 -116 188 aa, chain + ## HITS:1 COG:no KEGG:OB3378 NR:ns ## KEGG: OB3378 # Name: not_defined # Def: hypothetical protein # Organism: O.iheyensis # Pathway: not_defined # 17 186 1062 1230 1232 76 28.0 7e-13 MKKDEDMWAPEKDEDRLSGIWKWDNYIHLADQIMETYYLDREASIRSMARHITNAFIYSD QSELVEKRQDEWIAHFVDENHQKVNVMLIIYSAIAELPSERRKKHVLYLIRLNQDYELFD KLQLLPSIVGGGGNMIADMEKRISFLESLLPSLTGITYLRHKQKIERHIEMWKRDIEREQ VEEVFERL >gi|333606758|gb|AFDH01000054.1| GENE 3 2774 - 3040 290 88 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTHWHNNSLIHRFDNLADEADTSTVFQPMTEQLSALEMELLQSLQPDQQTLLREWQDKGM ALEYMKKEWIYIKGVQDGIKILSQFHSE >gi|333606758|gb|AFDH01000054.1| GENE 4 3232 - 3915 247 227 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_1054 NR:ns ## KEGG: GYMC10_1054 # Name: not_defined # Def: NERD domain protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 225 1 228 235 292 63.0 9e-78 MFAKLRALFAKPASEPPQKKAKQVPAARRPKVEATRIGELGEHRINIQLDQLPKECRYLS NLLIPNPKSRSGYSQIDHLVISPYGLFVIETKNYNGEIKGARKDRYWRVSNRFNMYNPLM QNYGHIKAVELHIPAYKRVKFISMISFTMRCRFSIDPELRKIQSDELIVYDVELSEFIGR KMVRMQAENPEPSLSETDIRGIYELIATANITDARIRAEHIAKSKKA >gi|333606758|gb|AFDH01000054.1| GENE 5 4078 - 5553 1254 491 aa, chain + ## HITS:1 COG:no KEGG:CAR_c18250 NR:ns ## KEGG: CAR_c18250 # Name: not_defined # Def: putative chromosome segregation ATPase # Organism: Carnobacterium_17-4 # Pathway: not_defined # 10 480 33 497 506 342 47.0 2e-92 MFKKILEMLNLNKSIAEKTLHLERINKQIQEKEDVIQATIHQARESVRQEAEHILREARR EADASLAIAKGHLADIQTKMEQELRQSEGISAELESRQKALNKIEKTLAKTKSESLGINN LLEKFPAAVKFEVIEEELAVLEESLGEGALKPIVELHLHHHDSKKLRQEMSGINKEIKAL LKSYEDRYTTKANKTIYHLMVIGLQAELQNILHTLSYMNLDKAVANASDLINKYQVICAG GNSQILPTITRFLSEIEPLFKNAILVEYQYFIQKEKEKEEQKLIREQMRQEAEEQRLLNE ERKKIEQEEQKYFKEMEKNKEVLSKETDPGKIAALEARLRELEEQVQRVEEQKEEITKRA NGRAGYVYVISNLGSFGDRMFKIGMTRRLNPLDRIEELGDASVPFKFDIHAMVFSENAVQ LEQDLHRILSDSRVNKVNLRKEFFYSDIEGLQATVEEIDPTVEFITTMVAQEYRQSQSMD LIEEQEMVEAV >gi|333606758|gb|AFDH01000054.1| GENE 6 5727 - 6557 508 276 aa, chain - ## HITS:1 COG:no KEGG:Cthe_2310 NR:ns ## KEGG: Cthe_2310 # Name: not_defined # Def: hypothetical protein # Organism: C.thermocellum # Pathway: not_defined # 1 90 1 91 242 65 38.0 3e-09 MKKLVTGIIIGCALTTTTSVFADSVKEYLLSKVTYPIVVNNKLYSNDQPILNYEGSTYVP LKAVGDMLGANVKWDNDRVLIDSIKATDDKPGTTTSGNTGIVTKNFASVQKYLPRYTPAV KLNGELYYINKSRGFTLITDEENNYYADLSFSDSALNEILAVAFNNYEVEPVSHPFAKGT TQAKQEYVEKEIKQDGINNSYYIGKIYNNDKSKTYEIITKDGEEKGAFNYKGNVYDLSKA NGVFNLIPVHDLFDYFGIKCSIERDTKNNLLIFNFN >gi|333606758|gb|AFDH01000054.1| GENE 7 6775 - 7245 175 156 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_0302 NR:ns ## KEGG: GYMC10_0302 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 155 1 157 158 169 52.0 3e-41 MRRQILNTTVKRDIEIRPQSGTGVELTGLALDKKRREKRSDAYVNALSQLDGAGAVLDRS KIDQIIQAVANEFSELQPYQFPIGIISKCYLGEPYEVHSLDIRLEIIEHYKKGTALPGGM EKGRSLAVHPGYEFIEIYSDSICAVARNGNVSMIKG >gi|333606758|gb|AFDH01000054.1| GENE 8 7250 - 8953 764 567 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_0303 NR:ns ## KEGG: GYMC10_0303 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 567 1 566 567 610 57.0 1e-173 MSNERVIRTADLSRLEGNIRVLADNIEHVSGQVSSVSQEVLETQSKIEQLVQEFQEYVRK DQLEKNLQLAETRLVKVRQEIETKYGHYSEVRRRTTGILQAVDASLVKKETIENSTEEHM LAAPRYWLAPALIALASWLNDNKELADKAMMEALRRDDEKTSLFFALVTRRGARYKASRE WLDRYFNLQDPHQLEREIVVLIDGFSNGIFGPDARIKTGKQIETWIEELSQKVGFVEEQH ASWKTALQMKTQKSSGESYPYLKDYSPTWPNLETSMEGAKLHAIIHDYFTDIFQKEITPS KSIAFAVDALLDTLVSKFDDEELPLRRDERLLSLIVNENGDRDRAQTMFAAEKTLEERIS FTQLLTNFAMHPEVSNASLATQKLSIALSKEWIRQAHDDLTAENRSNVPYSIDISIDDWK SHTNDGSNEAELIQSLTEHMEKRKEDDLSRVKLESKHWGALMFGIIFGAMGFVLPFFFVL GAVGIIYWYMSKRNLVNIKARVVQDYERLLTSCKDILRAVLADVVEWRREYASEDVKAGK VTEFLDTISPEQYSFSSHDNARAVMKS >gi|333606758|gb|AFDH01000054.1| GENE 9 8972 - 9196 185 74 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNEQSNGMILNRKRNAGPAVERTEDITSYQESDKNPQLEAVTQLTTNDTLASQFPEWDLK PPAALIRRRGSKLL >gi|333606758|gb|AFDH01000054.1| GENE 10 9193 - 9741 199 182 aa, chain + ## HITS:1 COG:no KEGG:AXYL_06346 NR:ns ## KEGG: AXYL_06346 # Name: not_defined # Def: hypothetical protein # Organism: A.xylosoxidans # Pathway: not_defined # 3 149 24 169 210 96 34.0 4e-19 MKVPVTYAEWVDCLDAFLEGTEEEAVLQRMEKGSFEWQAGVAEHLIRRISITLETRLNSI NRQMNTDFSRLNGDDTALVRTLLDTRRRFGKLNRLIHIPALPEQVKSQLSEILQKYVKET QLSIENSVKTDRTGHLKMLVKNNALTNYEQPDSMPLASVSSSGVPQKPPGGGTNIRRKVI LR >gi|333606758|gb|AFDH01000054.1| GENE 11 9738 - 11303 372 521 aa, chain + ## HITS:1 COG:PA0657 KEGG:ns NR:ns ## COG: PA0657 COG0464 # Protein_GI_number: 15595854 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ATPases of the AAA+ class # Organism: Pseudomonas aeruginosa # 15 496 12 492 493 242 32.0 1e-63 MNDLNSCLETVERYLKARIPFISIRTAERTRALDVLGKLAQKLMIPIFYHTISQGTRDIV TNRMANDDRSVMGGLDFASQKIGQQQNLTFIFNEVQDIEDDTQTARQFQDVVMLATETGG SVIVITNSPVWSPLQRHGMSVTLDPPNEDEMLVLIRDQISPYRGEISIEWGPEEEKKAAA ILAGISQIEAENVIATMLANGAIKNEDLKELTHAKDRIFADISGIERVQVREDYEIGGLE GLKLWLEANEPLLTADLRERGIRPPRGILLVGVPGCGKSLSAKAIASLWNLPLYRLDLST IQGQYLGQSESRLKEALSTADHVSPCVLWIDEIEKGLAGAIGASNDGGTSTRMVGQFLFW LQESMARVFVVATANDVSKLPPELLRRGRFDELFFVDLPTAKEREDIIKIYIEKGLKTNV SPDLLEKLVHISEGFAGADLEAAVRDVVKQAIVKGDDSISEQTYISFFENVVPLSQTSPE QIDYIRKWGKERAVPAGKSFEENSMDSEIYHRRKGPRNVIV >gi|333606758|gb|AFDH01000054.1| GENE 12 11884 - 12381 388 165 aa, chain - ## HITS:1 COG:BH1890 KEGG:ns NR:ns ## COG: BH1890 COG2318 # Protein_GI_number: 15614453 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 1 163 1 164 166 155 46.0 4e-38 MYVTVQDLIVEWKNEAALTQKVLDGLTDHALGQQVSPGGRTLGRIVWHFVTNIPDYLTEF GVLVEKVPNPNEVPSAKEIAETFHKVSSRVVQAFQEQWTDDSLKHVQHAFGRLESNATIF MGLIKHIVHHRGQVTVLMRQAELPIPSVYGPTKEGWVQLGVTPPL >gi|333606758|gb|AFDH01000054.1| GENE 13 12540 - 13778 513 412 aa, chain - ## HITS:1 COG:mlr7399 KEGG:ns NR:ns ## COG: mlr7399 COG0477 # Protein_GI_number: 13476154 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Mesorhizobium loti # 9 374 25 373 401 67 23.0 4e-11 MGTKSAFNRITLWASFLFVVILGFSRLSYGMFLPGIQRVIGGSYGQLGILGTVNFIGYLV GTLCLPPLISRFPDRKHLINRMTCLLLGLTLIGSAFSDHFTGLGLWRFAIGLLSAFATVL VLSIAMDAVRPAERGAASGLIWLGGSAGILATGLFAPFTIDPSHLQGWRHAWVIMGVFGV IAAVGFEFVTRKRGAEKMPSQTESKPRDKESENVYRLLLNPKRLLFLIASYFFFGWGYII YFTYLIPYLVSKGIPSLYAGLIWSGIGFAGLFNGWIGGKAIDRWPSGYTLASGLTLGTIG VCGVTTNNMLVTVLGAATIGLVSFITPPLMTTALLRRHVPHHAYASCLSIATAFFAAGQI IGPIVGGVAVERYGLQLGVASSAIFMAIAAVLAGLYGQQQRKLEIRDLPISG >gi|333606758|gb|AFDH01000054.1| GENE 14 13895 - 14797 416 300 aa, chain + ## HITS:1 COG:BS_ytlI KEGG:ns NR:ns ## COG: BS_ytlI COG0583 # Protein_GI_number: 16079992 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus subtilis # 1 273 1 272 308 132 29.0 8e-31 MDLRALKTFEACVRLGHFLKAAEELQYAPSTVTLQIQRLEADLGVSLFVRDGKRVIVTEA GRWLHKEATALLKSIGTMRQTVSDIAAGDNGSVRFAAIEPVASQQLATVIADFCKTRPKV ELTMEVSGSRTIAERVRAGELEFGVCSAPPSKLMLEFEPLIEERLGVMLNRNHPLADQDS ITASDLAGLTVLVKEPTCIYRELWETSIYGAGRNLFSCMEVGSFFVIQQMVKAEFGIGIV PIYSGLEQEGSLVIKPIADLNPVVTIGIAYKDKNYLGKAALLLMEAIRGIREPNPTRPSA >gi|333606758|gb|AFDH01000054.1| GENE 15 15349 - 27277 7109 3976 aa, chain + ## HITS:1 COG:BS_ppsD_3 KEGG:ns NR:ns ## COG: BS_ppsD_3 COG1020 # Protein_GI_number: 16078892 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Non-ribosomal peptide synthetase modules and related proteins # Organism: Bacillus subtilis # 2751 3968 1 1198 1523 752 37.0 0 MEQYLTLIDIVQDKRGQAEKGITYISGDRDELYESYGELFEHALQALHYLQSRGMEPGDE LLMQIDENRTFLHVFWGCLLGGIVPVPVTVGSNDEHKMKLFKIWDTLRRPYLISDAKVLE SLEKYARQQGLEQAFGVMAQTALPTESLDYGSEAKGVICPVQPDRLAFIQFSSGSTGDPK GVMLTHENLVHNIRDAAAESELDDNDAYLGWMPLTHDLGLIAFHLTCVIGNVNQFIMPTA LFIRRPSLWLKKASEHRVTLICSPNFGYKFFLDQYKSEAAKDWDLSRIRIIYNGAEPIST EVCDRFLSAMAVHGLRRSAMFCVYGMAEACVGVAHPLLYEGIKAVHLNREHLAIGEAVVP VAPEERCCVTFVDVGYPMASCDFRICDDNRLPLPDDVIGHIHIRGKNVTSGYYNNPQATA KAMTKDGWLVTGDLGFMRRGRLIITGRAKDIIFVNGQNVYPHDIERVAEEVDGVELGKVA ACGVRDPGTGQDRIVLFVIYTKKPEDFVPLIVKLRHHLNERGGWEVRDVVPVRRLPKTTS GKVQRYKLAQQYMAGQFDEVSGQLAGLLLAARAAKPKALARSEAEQKLLALCKRVLQTEE IGTDESYFELGANSLQLTQLAEALEGEFGKPIPVTDFFSYPTIAKLAAHLAADPAQKAPV KLEAGPADDPGDRDIAIIGMAGKFPQADTLEQFWEHAAQGRDAIGPYGDARKRDADAFMA KLQREPGQWEAVEGGYLDEIDTFDYAFFKLTPREASLMDPNQRLFLQTAWSALEDAGYGG ANVAGARTGVYVGFSKTSFDYERLLTEAEPEALPRFIIGNLPSVISSRIAYLLDLKGPAV TVDTACSSSLSAVHLACRALMNGDCDMAVAGGVKTILLPIRTGIGMESADGRARAFDGKS DGTGAGEGVGAVILKPLRRAVQDGDRIVAVIKGSAMNQDGSTIGISAPNALAQADVIAQA WRNARVDPETITYIEAHGTGTQLGDPVEIEGISQAFGRYTERKQFCAVSTVKTNIGHLYE AAGIAGLIKAVLSLRHRQIAPLVHFRAPNRQIRFEDSPVYPNVSLTDWEPQGFPRRCGVS SFGFSGTNCHVVLEEYKPREEAAETGAGGTAPDGALLLVLSARTDSALKALIGRYAERFE RSPDLDMRSVCFTASTGRSMFAHRLAIAAAGPAALRDSLLRLHREGIAGEGVFIGQIGTV SGFGEPAREVPGGPEAVGRFSAGEGGAAPTLETAEGAAQLAAAFVRGEAIDWEQLYAQGQ RHRVSLPSYPFEGKRCWIQIAETPQRRREGTGSLTMEKGQVNGVSALHEQLSHAGAATDS ALHSQVAQTLAQMISDVSHLEMNELQPHTHFLELGLDSINLTQVRQGIKDVFGLDIPMSR FFETLTDLDQVAEYIVHHFPQNASSGTQNGIDRFGRQTGDAVPQPGWDGPPSAEALRQTA PEPAGGWHHPPSVAFVHALRPIMEQQLHIIARQLDVLQPPSFVAPETSERAAGTEPPAFP AAVPHAHSVDVRSEAAAAGGSPSVAEPPAVSGGDHGGGGDSSEPVRAAAAGSEGGQPFRP YRPMDVKARETLTLHQEQHVLDLIDRYTARTGRTKAYTQKYRAVYANNRNVAGFRLVLKE MVYQLVAERAEGSKIWDLDGNEYIDLTMGFGVNFFGHDPAFIREHIDKALRSGMCLGPMS NLAGQVAEGICRMTGVERIALFNSGTEAVMVALRLARAATGRSKAVLFAGSYHGTFDGVL ALARPGADRERSMPLAPGVPSGMVDDIVVLPYGTETALAYIREHAHELAAVLVEPVQSRR PGLQPRPFLAAVREATEQAGAALIFDEVITGFRLHPGGAQAWFGIEADLVTYGKVIGGGL PIGIVGGRAAFMDGIDGGMWDFGDGSYPQHEERRTFVAGTFCHHPLAMAASLAVLERLER DGEKLQAELNAKTADLAETLNRFFTEEKVPIRIDYFGSLFRFALKGDLELFYYHMLDQGI YIWEGRNCFLSTAHTETDIARIVQAVKNSVAALRHGGFLPDPPPDGPDPGKLPLPEQPGH DHDRVIPLTPDQKQLWFASASSREKPHVLHESALIRLCGPLRLQAWSESVHTLMRRHEAL RTYMGADGETQVIAASLEAQIKLLDVSGYDDLSRERQKSAWLKLGIETPFRLSEREPLFR IHFLKLEEEEHLALFTFHHLIADGWSIVVFMRELASIYSALVRKEAYRLPEASVFRDYAA WQRLRMADPRSAEASAFWTDELSGPLSVLELPSPLRGVTVPGLEGGRYTAVLESGLVQSL RTLSIRLGSSLFVTLLSSFKILLHRLTGDSRLTVGVPTAGQAHMDAFSLIGHCVNVLPVV SRIQHETTFADFAGAVKESMRRLEAYQAYSFAALAEQGLRHLPVINVVFNMDRPLPKLRF HELDTELLPSPVTASKYELFVNVTEANKELRVDFDYNAGLFEPDVIAHWFRYWVTILGEI TKKSSQPLAEISLLGMDETRQICKRWSSLADRDGGCPCVLDAFGRPAPAGTAGELHIVAQ GLLNRQSMREAKRTGEWVYHAPGGELKRIGPISSFARIRGRLINLRQLESHLLRVCNLEA CAIRVWEDSAAGSAATLAAYVVSDPSAPWEEEALKRRWSEALPDYARPGQVMLMKALPLL ADGEPDWERLPAPSMPGADRMLEMGAGPDDGVEAELIRMWQEVLGVSAVRAHDPFFQLGG DSLTATVLLSRIRKTFGVQIPLGELFHRQTVGGLAQYIRGGEKQAFSPIEPVEAHLHYPA SPGQRRMYLLQQQEGGTTYNVPGRLHLEGDLRVPSFIEALQEAAGRHESLRTCLKLEGGE VVQAIQPDLVLHVPVTQAEASELEAISRRFIRPFRLEEPPLIRAELLDFGNRRYALLIDV HHAAADGFSMAALLDEVLQAYQGRQLKPVRVQYKDFAAWQRRQLAQGTYQEQEAYWLQTL GGELPVLDMPADFPRPQTQSFEGGVASLTLTPQLTGALRQLAANSGTTLYMVLLAAYFAL LSQYTGQDEIIVGTPVSGRRHADTEAAVGMFVNTLALRGRLQASQSFAELLQHVKALALA AFERQDYPFDELLDKLNPVRDLSRNPVFDTMFMFQNEAVQPSRVGALTYKVEEINPGISK FDFSLQVTTDHADGETLQCTWEYAVRLFAPETIRLLAKRYIRILEVVSADPAVRLTGIDL LTDAEKERLLDAGNGADCPAMTEFTVQGLFEKQAFATPDRAAVVFDGQTVSYGELNRQAN RLAHKLQALGAGPNTLIGICLDRSPSLPAALLAVLKSGGAYVPLDPSLPDERLRYMTERA ELRVLVTVQAHAERLGGLRDLTVVCLDTEAGALLSQSDANPRSEADGEHLMYVIYTSGST GMPKGASVYRSGFASLMRWYTGEFGMLAADKLLVITSPSFDLTQKNIFAPLLTGGQLILP PAGPYDARQIVSLIEQHGITLLNGTPSAFYPLLDASAPAQFAPLATLRHLFLGGEPIAAD RLALWLKSDACLAEVVNTYGPTECTDVTVFARLPAISAFAGKRVPIGRPVPGTRVYILNA ELGLVPAGTPGELCIAGAQVGGGYVGDPQQTAAKFVPNPYGGAQCPVIYRTGDLARFLPD GTIDYLGRIDHQVKIRGYRIEPGEIEAVLRHDIGAADAVVLAREVRPGDRQLIAYAVPRT SSKEAAMPPKALAALWRSELRRRLPEYMVPWPLVIMDAFPLTPNGKIDRSALPAPDVDLA ERSGEGTEAPRTVLEARLTELWREVLGAEAVGIRDHFFEIGGHSLRAAALTARIHQALQV EVPMRMVFEHPTVESLAQAMEGLQPNPYAGIPAVGELESYPVSSAQKRLYVLSQLETDGF GYNMPGVLRLEGEPDAARLEQAFRALIRRHEALRTAFTLRDGVPVQRIASKEAPLEFTLP RIRVRGEAEARQAARAFIRPFDLEQAPLLRAALVDEGANRHRLLVDMHHIVSDGVSTAIL LEELSRLYNGEGESEV Prediction of potential genes in microbial genomes Time: Sun Jul 17 08:54:49 2011 Seq name: gi|333606728|gb|AFDH01000055.1| Paenibacillus sp. HGF7 contig00191, whole genome shotgun sequence Length of sequence - 32233 bp Number of predicted genes - 29, with homology - 25 Number of transcription units - 16, operones - 9 average op.length - 2.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 752 786 ## COG2770 FOG: HAMP domain - Prom 779 - 838 8.7 + Prom 1414 - 1473 6.7 2 2 Tu 1 . + CDS 1546 - 2493 434 ## PROTEIN SUPPORTED gi|163762640|ref|ZP_02169704.1| ribosomal protein L33 + Term 2495 - 2540 15.3 3 3 Op 1 . - CDS 2490 - 2606 79 ## 4 3 Op 2 . - CDS 2686 - 3414 623 ## COG0671 Membrane-associated phospholipid phosphatase - Prom 3434 - 3493 4.7 - Term 3449 - 3502 14.2 5 4 Op 1 . - CDS 3542 - 3802 299 ## COG1937 Uncharacterized protein conserved in bacteria 6 4 Op 2 . - CDS 3842 - 4252 418 ## GYMC10_2489 hypothetical protein 7 5 Tu 1 . - CDS 4354 - 4521 124 ## Aflv_2348 rhodanese-related sulfurtransferase - Prom 4572 - 4631 1.8 - Term 4947 - 4988 10.6 8 6 Op 1 . - CDS 5047 - 5604 534 ## COG2318 Uncharacterized protein conserved in bacteria 9 6 Op 2 . - CDS 5691 - 6656 731 ## COG2378 Predicted transcriptional regulator - Prom 6685 - 6744 3.2 + Prom 6729 - 6788 5.9 10 7 Op 1 . + CDS 7021 - 8544 1845 ## COG0477 Permeases of the major facilitator superfamily + Prom 8602 - 8661 9.8 11 7 Op 2 . + CDS 8698 - 10197 745 ## COG1520 FOG: WD40-like repeat + Term 10216 - 10269 10.4 - Term 10060 - 10099 6.2 12 8 Op 1 5/0.000 - CDS 10272 - 11237 1356 ## COG4607 ABC-type enterochelin transport system, periplasmic component - Prom 11276 - 11335 3.1 13 8 Op 2 10/0.000 - CDS 11354 - 12112 236 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 14 8 Op 3 11/0.000 - CDS 12106 - 13059 1026 ## COG4605 ABC-type enterochelin transport system, permease component 15 8 Op 4 . - CDS 13056 - 14006 987 ## COG4606 ABC-type enterochelin transport system, permease component - Prom 14096 - 14155 7.6 - Term 14098 - 14145 3.0 16 9 Tu 1 . - CDS 14185 - 14382 99 ## - Prom 14403 - 14462 6.0 + Prom 14379 - 14438 5.2 17 10 Op 1 . + CDS 14532 - 15029 76 ## BCAH187_A2826 hypothetical protein 18 10 Op 2 . + CDS 15034 - 15162 78 ## + Term 15289 - 15332 7.4 + Prom 15397 - 15456 3.0 19 11 Tu 1 . + CDS 15476 - 16036 195 ## COG0662 Mannose-6-phosphate isomerase + Term 16114 - 16166 13.1 - Term 16102 - 16152 13.5 20 12 Op 1 . - CDS 16170 - 18893 3106 ## COG0383 Alpha-mannosidase - Prom 18970 - 19029 2.0 - Term 19036 - 19070 4.0 21 12 Op 2 . - CDS 19099 - 22392 3182 ## GYMC10_1875 glycoside hydrolase family 42 domain protein 22 12 Op 3 . - CDS 22389 - 23708 1506 ## COG3538 Uncharacterized conserved protein - Prom 23740 - 23799 3.2 + Prom 23713 - 23772 3.1 23 13 Tu 1 . + CDS 23796 - 23936 152 ## 24 14 Op 1 7/0.000 - CDS 23903 - 24823 1070 ## COG0395 ABC-type sugar transport system, permease component 25 14 Op 2 2/0.000 - CDS 24854 - 25792 1236 ## COG4209 ABC-type polysaccharide transport system, permease component - Prom 25834 - 25893 3.8 - Term 25838 - 25882 8.3 26 15 Op 1 2/0.000 - CDS 25897 - 27360 734 ## PROTEIN SUPPORTED gi|15900035|ref|NP_344639.1| ABC transporter, substrate-binding protein - Prom 27545 - 27604 2.8 - Term 27572 - 27604 1.0 27 15 Op 2 7/0.000 - CDS 27606 - 29126 2030 ## COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain 28 15 Op 3 . - CDS 29119 - 30939 2065 ## COG2972 Predicted signal transduction protein with a C-terminal ATPase domain - Prom 30966 - 31025 5.4 + Prom 31125 - 31184 4.3 29 16 Tu 1 . + CDS 31224 - 32232 724 ## COG2207 AraC-type DNA-binding domain-containing proteins Predicted protein(s) >gi|333606728|gb|AFDH01000055.1| GENE 1 2 - 752 786 250 aa, chain - ## HITS:1 COG:alr1121_1 KEGG:ns NR:ns ## COG: alr1121_1 COG2770 # Protein_GI_number: 17228616 # Func_class: T Signal transduction mechanisms # Function: FOG: HAMP domain # Organism: Nostoc sp. PCC 7120 # 2 250 3 248 1009 254 60.0 8e-68 MSEQDQRSNDSLDVLDEKQLLQVLLAFKKGDFSVRMPYDLNGMPGKIADTLNDILDMQEN VVQEVQTVERVVGKEGNTNRRFMCRSTGGSWNAFNDSLNNLISDLIQPTSEMVRVINAVA QGDLSQKVELEFEGRALTGEFLRTANNINRMVNQLGTFAAEVTRVAREVGTEGILGGQAE VTDVSGTWRDLTESVNNMASNLTDQVRNIADVTTAVAKGDLSRKITVNAKGEFLELKNTI NTMVDQLSTF >gi|333606728|gb|AFDH01000055.1| GENE 2 1546 - 2493 434 315 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163762640|ref|ZP_02169704.1| ribosomal protein L33 [Bacillus selenitireducens MLS10] # 8 314 7 321 323 171 34 4e-42 MSSYAAIGIDIGGTHIKSGLILPDGKVLASHKTETEASAGKSGLMAKLAGLLQTYSEEAA AAGVKLAGTGIGSAGYINREGTVAFATDNLPGWSGTTLRADIEKLSGLPAAVDNDVNVIA LGEQWLGAGRGWDTFLCVALGTGVGGCYIREGSPLHGRDGFAGAYGHMVVAFGGEPCTCG HRGCWEQYASVTALKRLIRERGGETLEEASPPELFARARAGDETAMAIVRLYAEYVATGL SGLIHTFNPPAVVVGGAVTEQGDFLFDLIRRHVLDMTMPAYTAAPVPIVPAELGGTAGMF GAAKLLFDRLKAEQP >gi|333606728|gb|AFDH01000055.1| GENE 3 2490 - 2606 79 38 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSPPALAGGMATDADTRVCLRLGRKQAKALRMCEGLLR >gi|333606728|gb|AFDH01000055.1| GENE 4 2686 - 3414 623 242 aa, chain - ## HITS:1 COG:SA1250 KEGG:ns NR:ns ## COG: SA1250 COG0671 # Protein_GI_number: 15926998 # Func_class: I Lipid transport and metabolism # Function: Membrane-associated phospholipid phosphatase # Organism: Staphylococcus aureus N315 # 41 221 11 189 204 103 34.0 2e-22 MIKAVPDLFVQDQELVKKGRPFIAMNTKLNVLLTRSFLVCLLLALCFGTVALLVSRQQIA WFDETIISFVQGAESPGLTAAAGLLSEIGSSAVVPFITIAAALYLYFVLKRRSEVILLIA AIGGSAILNTILKKIFQRERPTIHIIMEEAGFSFPSGHSMAVVGLYGILVYLLWRHISSA AGRAVLVVLAAAMIVGMGLARIYLGVHYPSDVLGGYLASGFWLGVCIWTYRSYRNRRQSA VR >gi|333606728|gb|AFDH01000055.1| GENE 5 3542 - 3802 299 86 aa, chain - ## HITS:1 COG:SA0045 KEGG:ns NR:ns ## COG: SA0045 COG1937 # Protein_GI_number: 15925752 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 86 1 86 86 75 44.0 2e-14 MNYDESLVRRLKRMEGQVRGILKMMEEEKDCKDVVAQLSAVRSAADKAMAYIVATNLEHC IRQEEEKGKDTGKLVQEAVELLIKSR >gi|333606728|gb|AFDH01000055.1| GENE 6 3842 - 4252 418 136 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_2489 NR:ns ## KEGG: GYMC10_2489 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 19 115 20 114 129 74 39.0 1e-12 MIMWEIIAGMMVLALVLNWLPVKGLNYLSQEKARELVASKEEGRIKVLDVRDASDYEEAA GFPSINMSVGRLPYLWKDEFSPEDRILLVGDSNRHIKKAARFLKRRGFKGLYAMQLRSEL RSLGTRPEKTCGAGCP >gi|333606728|gb|AFDH01000055.1| GENE 7 4354 - 4521 124 55 aa, chain - ## HITS:1 COG:no KEGG:Aflv_2348 NR:ns ## KEGG: Aflv_2348 # Name: not_defined # Def: rhodanese-related sulfurtransferase # Organism: A.flavithermus # Pathway: not_defined # 1 51 50 100 102 62 52.0 6e-09 MQRLGELDRNREITVVCRSGNRSGLACELLTEQNFDVINMTGGMNNWSDRISYGR >gi|333606728|gb|AFDH01000055.1| GENE 8 5047 - 5604 534 185 aa, chain - ## HITS:1 COG:BS_yisT KEGG:ns NR:ns ## COG: BS_yisT COG2318 # Protein_GI_number: 16078149 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 20 182 6 166 171 139 41.0 3e-33 MSSDTQHQEQEKAALLSGYAEQQYDYHVWANGKVFAGLKALPEELSFEQIQSIFPSVADA LNHIYMMDEMWLVIMKGGGYEEARQVVTDLYAQGRGGSLDELQKRFALAEEKYRAFFAEG EGASAETAPSHPQFGSLETRVYALVQHVVNHGTYHRGNISAMLRQLGHRGTPTDYIAFLF ERGIR >gi|333606728|gb|AFDH01000055.1| GENE 9 5691 - 6656 731 321 aa, chain - ## HITS:1 COG:DR0055 KEGG:ns NR:ns ## COG: DR0055 COG2378 # Protein_GI_number: 15805096 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Deinococcus radiodurans # 7 307 9 303 316 110 30.0 3e-24 MSKADNMLAVLWQLKSGRKMTARELAETLEINIRTVYRYIDALCASGVPILADSGHNGGY SLLPNFREAPLFFNAAEQKALVHAAIFAQEAGYPFGDALNSAVGKLKQYTNPEQLSAIER HEAGFDVIHPPTDSSLEAYLQMLEIAVADGHTLHMEYSKGNSSAVQSRSIDPYGLVHWKS KWYLVAYCHLRGELRSFRVDRIRVLFHTEGVFSRPPGFSARQFFMNNLLPDTSRQEQLVS IRIQGAPQAIAELCDHWLFSHTIVERTTDQIHMKMEEKAIRSYVPYFLMIQGKSIRVLEP ALLKEQLIDVTSGLLEFYKQL >gi|333606728|gb|AFDH01000055.1| GENE 10 7021 - 8544 1845 507 aa, chain + ## HITS:1 COG:BS_mdr KEGG:ns NR:ns ## COG: BS_mdr COG0477 # Protein_GI_number: 16077376 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus subtilis # 22 407 24 410 426 377 53.0 1e-104 MAPAKTKHLGIVIAGLLLGILMASMDNTIVSTAMGTIVGELGGLDKFVWVTSAYMVAEMA GMPIFGKLSDMYGRKRFFVFGIIVFMIGSILCGTATSIVQLSIYRAIQGIGGGALVPIAF TIMFDAVPVEQRGKLGGLFGAVFGMSSIFGPLLGAYITDYIHWEWIFYINLPLGLIALVF IAAFYKESHEHSKQKIDWLGAVTLVGAIICLMFALELGGKEYAWDSAIILGLFAGFAVLA VLFLFIETRVAEPIISFGMFKNRLYATSNATAIFSGAAFITASVYIPIFVQGVLGGSATN SGMVLLPMMLGSVVTATGGGFLMNKVSYRTIMIPTTAILVAGTLLLTTLNADSPRWLVTI YMVIVGLGIGASFSVLSNAAIHLFDARQRGSASSTLNFLRSLGMTLGITIFGIIQSHAFT RKLTESFAGQAQAPQGLDTSDARSLLDPAKRALIPAPVLDKITQALSSSIVHTFAWTVLP AALALVCAIAMSREKLDPNQQHGPASH >gi|333606728|gb|AFDH01000055.1| GENE 11 8698 - 10197 745 499 aa, chain + ## HITS:1 COG:MA1762_2 KEGG:ns NR:ns ## COG: MA1762_2 COG1520 # Protein_GI_number: 20090613 # Func_class: S Function unknown # Function: FOG: WD40-like repeat # Organism: Methanosarcina acetivorans str.C2A # 85 398 1 298 306 145 35.0 1e-34 MKRIKCFISIAILSCLFFTLETATMAATPSFSQGSAYQQGLYDVSSMQPLGANWNRNSQF KAVDQNIHLKWTYKMPSGGNSSVILDENGTLFVKSYEIGVTPPYKIHAINPDGTRKWLYS TTEELTNGSPIISKDKKLFIPAGKNLKSIDLVTGIANDLPLDNGYPSQPAIDAEGTIYLA GAGGRLAAYRPDGTQKWKSSFNTNYSPGYLALAANGTLYFKAGSNGYGSLYAYDSKTGGM KWEYTGVGTKYTPSAPALAQDGTIYVSGQEGFVYAVSPDGTLKWKLAIEKVGTSRAVIDP IVGPDGTIYAGNGTQSFVAINPDGTLKWTYAVGMIQASPIIDKNGTIYLGADGKVIALNN QGVQKWALDLKASVFTSAPAIAADGTIYIADGDGSVFAIGGEVSNPSEPETPTDPETPGN PDPAGRALLVITLMNGTEKEYDLSMKEVNQFITWYESKAKGTGPVSFAINKHDNNKGPFK QRNDYIIYDKIITFEVNEY >gi|333606728|gb|AFDH01000055.1| GENE 12 10272 - 11237 1356 321 aa, chain - ## HITS:1 COG:BH1028 KEGG:ns NR:ns ## COG: BH1028 COG4607 # Protein_GI_number: 15613591 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type enterochelin transport system, periplasmic component # Organism: Bacillus halodurans # 3 321 4 329 329 328 51.0 1e-89 MSKKLSLLLMTLVLAVMAAACGNKEVATTSSKEGTAPTAAASKELTIKHQLGETKVKTNP AKVVVFDMGVLDSLDKLGVEVAGVPQDGLPTYLKKYKDAKYTNVGSLKEPAFEVISKLKP DLIIISGRQQDAYKELSSIAPTIFMGVDAKKYMESFKENAKQLGQIFGKEAQVDQELAKV DEAIKGIKDKVGAGNKNGLITLVNGGKISAYGPGSRFGIIHDVFGVPAVDKTIEVSTHGQ SISNEFIVEKNPDYLFVIDRDSAVGTESAGAKKVIENELVKTTKAFKEGNIIYLNPDYWY LSGGGLVSVAEMVKEVSAGIK >gi|333606728|gb|AFDH01000055.1| GENE 13 11354 - 12112 236 252 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 226 1 229 245 95 26 4e-19 MVEVKGVSKLYGSKHVVENVSVQIAKGKITSFIGPNGAGKSTLLSMVSRLIDKDQGEVFI EGKEIGQWKSNDLAKKISILKQSNHINIRLTIRDLVGFGRFPYSQGRLTAEDKKYIDEAI QYMDLGDIQDKYLDELSGGQRQRAYLAMVLAQDTEYILLDEPLNNLDMKHSVQIMKVLRR LVSELGKTIVIVIHDINFASCHSDYIVALKNGRVVKEGTTDEIIDSAVLKEIYDMDIEIH NLNGNRICTYFA >gi|333606728|gb|AFDH01000055.1| GENE 14 12106 - 13059 1026 317 aa, chain - ## HITS:1 COG:BS_yclO KEGG:ns NR:ns ## COG: BS_yclO COG4605 # Protein_GI_number: 16077449 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type enterochelin transport system, permease component # Organism: Bacillus subtilis # 6 317 4 315 315 352 69.0 4e-97 MNSQAKVKISILAILALVLIAVFLLIDASGNWDYVLPRRGKKILAIVITGGAIAFSTMVF QTITNNRILTPSIIGLDSLYMLFQTAIVFLVGSASFLMHKNVNFLISVGLMVAFTGVLYK LLFKKQGQNLYFLLLVGLIFGTFFQSISSFMEVLIDPNEFLIVQDKMFASFNNVNTDLLI ISVVLLALVGVYFARFTKYLDVLALGREHAVNLGIDYDYVVKRLLVVVAILISIATALVG PITFLGLLVANVSHEFLKTFRHKVLITGSILISIIALVGGQLIVERVFTFSTTLSVIINF IGGVYFIYLLLKEKKSW >gi|333606728|gb|AFDH01000055.1| GENE 15 13056 - 14006 987 316 aa, chain - ## HITS:1 COG:BS_yclN KEGG:ns NR:ns ## COG: BS_yclN COG4606 # Protein_GI_number: 16077448 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type enterochelin transport system, permease component # Organism: Bacillus subtilis # 1 313 1 313 316 398 75.0 1e-111 MKKRYLVIALIVLSVASIFIGVKDISPLDLFNLSDDKVHILLVSRLPRLISILIAGMSMS VIGLIMQQLSRNKFVSPTTAGTMDSARFGILVSMMLFTSAGPLEKMLIAFVFALLGTFIF MKILDRVKYKDTIFIPLVGLMFGNIVSSITTFFAYKNNLIQNMSSWLQGDFSMVMKGRYE IMYISIPVLVIAYLYANRFTIAGMGEEFSTNLGLKYKQVVNIGLVIVALVSSVVILTVGT LPFLGLIIPNIVTLYMGDNLKRALPHTALLGAVFVLFCDILGRIIIFPYEISIGLTVGVI GSGIFLYMLLARRKAL >gi|333606728|gb|AFDH01000055.1| GENE 16 14185 - 14382 99 65 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MQKVHLRQLLKTKFNEVLEQASDEQRELLLKYEEEGQIQTALAIELMYKQGLMDGIYIYQ RVFGN >gi|333606728|gb|AFDH01000055.1| GENE 17 14532 - 15029 76 165 aa, chain + ## HITS:1 COG:no KEGG:BCAH187_A2826 NR:ns ## KEGG: BCAH187_A2826 # Name: not_defined # Def: hypothetical protein # Organism: B.cereus_AH187 # Pathway: not_defined # 1 157 1 157 159 208 71.0 7e-53 MFHVKDILSDQLLANANDPSWYLPFSAAVENLSEEVAFWKPSEDSNSIAEIVQHLLYWNE TWQTRYQKSDVNTVPSIENNNKSFIIPKDKKFTDLKDQLLDVLLKWQDLLTEEKVESDVI GFPVAAKWWELLGNLSTHNAYHIGQICYIRKLQKSWNVDEKQEII >gi|333606728|gb|AFDH01000055.1| GENE 18 15034 - 15162 78 42 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNDSLWKFFEETHLDYEGNIILVPQNWLFSDELLTSTTLAYF >gi|333606728|gb|AFDH01000055.1| GENE 19 15476 - 16036 195 186 aa, chain + ## HITS:1 COG:BS_yrkC KEGG:ns NR:ns ## COG: BS_yrkC COG0662 # Protein_GI_number: 16079709 # Func_class: G Carbohydrate transport and metabolism # Function: Mannose-6-phosphate isomerase # Organism: Bacillus subtilis # 1 186 1 185 186 228 62.0 5e-60 MYYAGNRFPYPYYVNAPVYNYARQPVYRAIPHELENADRLGHRQPSNMNGKTELKDYGRT PFVVNISEAAKQNNTYRTAIWTGDHLQVTVMSINPGEDIGLEVHPTTDQFLRIEQGQGLV QMGDTKDHLNVQKRVYDEYAIMVPAGKWHNVTNTGHTPLKLYSIYAPPEHPFGTIHRTKA DAMAAE >gi|333606728|gb|AFDH01000055.1| GENE 20 16170 - 18893 3106 907 aa, chain - ## HITS:1 COG:L130682 KEGG:ns NR:ns ## COG: L130682 COG0383 # Protein_GI_number: 15673480 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-mannosidase # Organism: Lactococcus lactis # 3 903 2 892 899 803 46.0 0 MSKKRTAHIISHTHWDREWYLPYEKHHVRLVRLVDTLLDKLDAGPEYKSFYLDGQTIILE DYLQVRPEQKERLEKYIREGRIFIGPWYILQDAFLTSPEANVRNMQIGHQDAKRYGPVSK IGYFPDTFGIYGQAPQILQQAGIRNAFFGRGVKPTGFNNTVSDSGYESSFSELIWEGSDG SKVLGVLFANWYSNGNEVPAGEEEAKAYWARKLADAEKYASTGELLFMNGCDHQPIQLDL PEAIETARKLYPDTEFVHSNFAAYLEALGDSVERELSSVKGELRSQRTDGWSTLVNTASA RVYLKQMNQEGQALLEKVAEPLASFAHLLGEQYPHHLFTYAWKTLMQNHPHDSICGCSVD EVHREMVTRFEKSRHVAEAIVDDSKRAIAEAVDTSAFAGFGEDALPVVVFNTTGWERTGT VSIELDAARLYFREGYSLEETASRMKNVDLSGRVLVDAEGKVIPCTVEDLGLLFGYDLPD DQFRQPYSCRKVKLTFEARNVPALGLQTYAWVRSDKAPSAPASLFAGERVLENESLKVEI AQDGSFALTDKANGRTYRDLGVYENTGDIGNEYMYKQPEGETALTTKGLPAQVRVLEDTA FRASVEIVHEWEIPVSADETLDREQREIVYFPHRKAQRSAETVPMVIRTVVSLDRGGKGV ELSVSFNNQAKDHRIRALFPTDLQAGSHAADSVFEIARRDNEPAAEWENPSNTQHQQAFV DVSEAQAGLTVANLGLSEYEVLRDGRNTIAVTLLRAVGELGDWGLFPTPEAQCLGEHIVR LMLIPHSGDGIASGAYAQAYQFQIPWTLSQTGVHTGAVKPVYAPVHWESRELSFSSLKMN EESGDILLRWFNMSPQQAELPVRTSLPHSGFYKSSIMEEAGEAIPAENGAIRVSVAPHEI VTIGLRR >gi|333606728|gb|AFDH01000055.1| GENE 21 19099 - 22392 3182 1097 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_1875 NR:ns ## KEGG: GYMC10_1875 # Name: not_defined # Def: glycoside hydrolase family 42 domain protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 70 1094 37 1043 1046 1466 68.0 0 MSVNQPVVLFYDPSFPISTAEQANVKTGRQTVPVLKEEVRQPDSAAGLTGAAGAALQTDT LAGIGNFVSADGLAEALNEAAGGCFVNLHAPYFPKAAWPAILGFLSRGGSLISVGGAPFK HPVRREGGEWHVEAEQTAYHQELHIHEALRVDASSAEELSASDTVPLLAGQESLFSVTDT WNLVPHVTKTSDLPHQMGSAGPMSTQIYPLLKGITAEGREVSAPVVLWENSRGKFEGSRW LFVNQPLRALFWEQGGAAALKQWTEFCAAGVTELWLKPNYASYEAGERPQLTLQTQRMTR ACADSRAKRTEDWTFSITVEHESTSDRWTCELQQEVTGEFGLVRIPVPLDMRSGLYRVEC RAESARGEIRILRQGFWGLDAKMLAEGQPIGRDRDYFIQDGRPLPVVGMTYMTSDVARKF LFLPNAAVWDRDMAQMARAGINWIRTGIWTAYRNIMQVDGHVSEDVLRAIDAFLMTAKKH GLQVTFTFFSFTPETWEGVNPYLDPQSVEAQKRFIRSIVSRHRNTKNVDWDLINEPSMFE PEKIFSDGPRSCRDPFEKAAFIEWLRERHGSIEALQERWNMSPEQLPDFAAAALPEAEEI NFDVQDMHRGKKGTRWLDYCLFSMDMHNRWARELYETIKEQCPDHLVTVGQDEALGAQRP SPFFYEEAVDYTTVHSWWLNDQLLWDGIFAKTAHKPNLVQETGIMYVETPDGRAKRTETE LRNLLERKYAYAFATGGAGAVHWIWNTNFYMDNANESHIGALRADGTEKPEADVSYDFGT FMAGIRDLFRERKLEDIVAVFPYSNDFSNRKLAFDATTRLTRVLAYQLNQPFRAVSEYHL DALEQGPVKLILLPSAHNVDDQAMAELVEFVKRTGAVLLATGPLGIDAYWRETARLDDVL GSGKLANVRREEMLSIGGSIQPVSFGQRRIAETVKEIRLNDSGQGGVIGAGAPTGTGVTG QKADSPQGDAVVDIPLGKGRLIWSPLPVELNERTEAVAELYRYALEAAGCESGLEWRRGG NLPGVYGRKISFKEGSLFVFVSEFAWDAPVEVKDTETGAVYSFLLEKERSVLFAADSAGK LLAVYRPDEVQIRVGNE >gi|333606728|gb|AFDH01000055.1| GENE 22 22389 - 23708 1506 439 aa, chain - ## HITS:1 COG:lin0759 KEGG:ns NR:ns ## COG: lin0759 COG3538 # Protein_GI_number: 16799833 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 36 430 24 418 432 442 52.0 1e-124 MEQFRLPKIPMPKLELPQAIQEVLKEAEVKLAHRPKLLQLFKNCFPNTLETTTKLLDDGT TFVITGDIPASWLRDSVEQVIQYVPFAKEDKDLQRIIGGLIKRHIAYIHIDPYANAFNES ANDWHWNTTDITDMSPWVWERKFELDSLCFSMRLAYAYWKETERTDIFDAGFKGAMRKIV ELFKTEQRHFEQSPYRFTRDNGIPTDSLRNSGLGMPVNYTGMVWSGFRSSDDACDFHYNI PANMFAVVALRHMQEFAEWVFRDMEFLKELKDLEADIDHGIQLYGIYRHPEFGPIYAYET DGFGNYCLMDDAGTPGLMSIPYLGYVNADDPIYQNTRRFALSKENPFYYEGTAAKGIGSP HTPPGYIWHMALSMQGLTATTTEEKLEMIAMLEATDADTGFMHEGFHADDPNTFTRTWFA WSNSLFSQLVYRAMKDGLL >gi|333606728|gb|AFDH01000055.1| GENE 23 23796 - 23936 152 46 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSLLLLSCEKWYRAGVPLSMQERPRRLQGRYALRSAYSFTAPIVRP >gi|333606728|gb|AFDH01000055.1| GENE 24 23903 - 24823 1070 306 aa, chain - ## HITS:1 COG:BH0795 KEGG:ns NR:ns ## COG: BH0795 COG0395 # Protein_GI_number: 15613358 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Bacillus halodurans # 6 306 22 322 322 367 62.0 1e-101 MQAQTRKKSRDFHQLPTVWNVVFNLIAALFAFACVFPFLFVTIISFTDETTLAANGYQLI PEKWSLEAYRYLFKAGDQLLRSYGVTILVTIVGTVISVIMTALFAYAISRKTFKYRNFFG FFAFFTMLFNGGMVPTYIVVTQLLGMKDSLWALILPLAGNAFYIMIMRTFFSTSVPDAIV ESGKIDGAGEFQIFYKLVMPLALPGMATIGLFSTLGYWNDWFNALLYIDDPKLVPLQSML MRIENSMQFLLQNTNNPSLGMGVLQSLPQDTSRMAMVVLATGPIILAYPFFQRYFIQGLT IGAVKE >gi|333606728|gb|AFDH01000055.1| GENE 25 24854 - 25792 1236 312 aa, chain - ## HITS:1 COG:lin2117 KEGG:ns NR:ns ## COG: lin2117 COG4209 # Protein_GI_number: 16801183 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type polysaccharide transport system, permease component # Organism: Listeria innocua # 11 312 8 309 309 374 65.0 1e-103 MTRITNFFKDINKNKALLLMVLPGTIWFLFFSYLPMAGMVVAFKQYRYSRDGFWASIVES KWVGLQNFKFLFSTNDAYIITRNTLLYNSVFIIVGLVLAVLLAIVLSEIVNKRLAKIYQT GMFLPYFLSWVIVGYFVFSFLSFDKGLVNKVGAMFGVDPTQWYNNPTYWPLIIILVFLWK SVGYNSVVYLAAIMGIDKSLYEAAMIDGASKWQQIIHITIPMLKPLMTILTLLAIGRIFY ADFGLFYQVPRDSGTLYSVTNVIDTYVYRGLKTTGEIGMSTAAGLYQSLVGFILVITSNY IVRKFNKENALF >gi|333606728|gb|AFDH01000055.1| GENE 26 25897 - 27360 734 487 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15900035|ref|NP_344639.1| ABC transporter, substrate-binding protein [Streptococcus pneumoniae TIGR4] # 6 487 5 491 491 287 36 7e-77 MNRSKKSLAVVLAMLLTFTLVLSACGDSKQGEGTSDKPVELIWYTIGTPQKDTDRVMEEV SKYTKEKIGVTVKMRQIDFGDYSQKMQVMAASGEPIDIMFTSSWAFDYVQNARKGAFLAI DDLLNKQGKGIKDALDPAFLEGSKVDGHNYGIPANKELPAQEVWRFNKQLLDKYNLDITN VNTLESLEPLLKTIKEKEPNVFPLAADKNFGLYVPYDYVIEKMPMAVKLDSTDLKVVNVF DTPEMKQALQTMNKYYKAGYIPTEAATLNSLSDVQATGKWFADKATNQPFADNQWSASYG YPVVSTPAGPSTIFNWSVMGSMQAISANSKYPEKAMEFLNLLNTDPKLRNMVDSGIEGVH YKKVGDNVMENLPDAKNYDMPTFSLGSVIITYLNKEDPANKWDEFKKFNDAGKPAPLLGF NFDTSKVTTEIAAVQNVKEAFWTSLMTGTVDPNQYLPQANEKMKAAGLDKIMAEAQRQID EWKASKK >gi|333606728|gb|AFDH01000055.1| GENE 27 27606 - 29126 2030 506 aa, chain - ## HITS:1 COG:BH0793 KEGG:ns NR:ns ## COG: BH0793 COG4753 # Protein_GI_number: 15613356 # Func_class: T Signal transduction mechanisms # Function: Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain # Organism: Bacillus halodurans # 1 503 1 502 508 232 31.0 1e-60 MYRVFLVDDEPFIIEGLYDIIDWSSFGLEIVGQAENGREALEALKKTSVDLLITDISMPV MNGLDLIRGAREFHPDLKVVVLSGFNDFVYLKECIRLGIENYLLKPINLDELKATLDNTV EKLNASKSERLFNEYGVQILKDNMMHRWLTGQIASGEYRERADLLGIEMDKPYMAAAVMR LEENFVQVFELISRQMKYNESIIPFRDVDGDLVILFVMDDPEEGKREMIGTIEELLDRLT TYQPIRTSIGSVQPLPDQAPLGYRHAKKAQEYFLLYPEHGLIDYSDLPSGKDAGKAKFPI DWSEYTKLIMAKDREKLLLRIEEDFEEMQTLEGVTPGDIQDIAMEVIILFKMALKEIKHV EETELYKEGFEKVRQAGTLRELIKAVQDVAGLTVDSLVRDIKSPVVQQVLNYIHESYAEE LSLKALGALYNIHPVYLGQLFHRETGETFTEYINKYRIEKAKEQLKTTHLKVHEIARNVG YWETGYFYKQFKKYVGISPTDFKGLL >gi|333606728|gb|AFDH01000055.1| GENE 28 29119 - 30939 2065 606 aa, chain - ## HITS:1 COG:BH0792 KEGG:ns NR:ns ## COG: BH0792 COG2972 # Protein_GI_number: 15613355 # Func_class: T Signal transduction mechanisms # Function: Predicted signal transduction protein with a C-terminal ATPase domain # Organism: Bacillus halodurans # 11 596 10 572 587 282 30.0 1e-75 MGVRRIYRNYLKNNLFLKMILMFSLITILTIITLSYLMFSFMSQSIVQRELANQKKAMEG VSSYVNGKFEWVQSLLTDIYQNDALSANMSYFLQHPYQEYAEHRLDQFYKDTNFSTDVLK YLQNKLDADPDIQNLMLYSAEEQYLYTYNSNRLSKLISTNASRSYIPDIMAQETRTIAPP NVWMRKTLNQWDPRLYSIRVPVNDKYSLKNIGQLLLYFNSDGIVRALESYKPDLKGTIFV MTPDGDVMFDSSGQYYGKKFPYTDRINSLYDTGTLQNGMYLTKLTQSRGGFIVMGAAPKE EIAASYRGLRNTILLVSAIAILFAILIPSLFIMNFAKRTNRIIQFTRRVKRGDLKARIRD TREDELGQISKSFNDMLDELNNYIDRVYKAEIKQKHTELTALQARINPHFLYNTLEVIRM RALSQGASDVGEMIYSLSVLFKSFVQQKTIYTMKDEVEACRMYLELFRIRYKDRFSYEIV WERDLAHVQVLKMSLQPIIENYVVHGIRSDRKDNRLTITIGEEGGFVRVRVEDNGNGMTE EKLAEITEKLDREETEGESFGLRSVHERLKLQYGSEYGIELHSKPGQGTTVIVRYPGAEG QEAAHV >gi|333606728|gb|AFDH01000055.1| GENE 29 31224 - 32232 724 336 aa, chain + ## HITS:1 COG:lin2267 KEGG:ns NR:ns ## COG: lin2267 COG2207 # Protein_GI_number: 16801331 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Listeria innocua # 14 269 14 286 292 101 26.0 2e-21 MRYLYEFIKHQDDLPYRLFVNSVAFVPFHWHREVEIIYVLHGAVTLWLDQHQYALYKDDI IVVNSMSVHKIERTHQDNVLLTLQFSPDLLDSQVFIDCNSLRQKPGNRDRYDKVRHYLAQ LTWEASKKAPGCRNFSIGLLHLLTGHLFRYFTTGPHEAYQEDKKTYDYKRLNRVLKYIDR HYSQKITLQSIAEQEHLSLHYFSHFFSDKIGIPFQKYLTSIRLEKAVAELTESAKSVTQI ALDCGFANVKLFNKYFKEKYEMTPGAFREAAKEKTASPERKPLTYDDSPSGDYYETDTIQ AMESLFHYLNLNEDKPDLSGAKEIVHDQIHIRVRAD Prediction of potential genes in microbial genomes Time: Sun Jul 17 08:57:40 2011 Seq name: gi|333606354|gb|AFDH01000056.1| Paenibacillus sp. HGF7 contig00137, whole genome shotgun sequence Length of sequence - 396893 bp Number of predicted genes - 362, with homology - 323 Number of transcription units - 218, operones - 77 average op.length - 2.9 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 46 - 777 127 ## COG4200 Uncharacterized protein conserved in bacteria 2 1 Op 2 . - CDS 790 - 1542 273 ## GYMC10_3917 ABC transporter permease 3 1 Op 3 . - CDS 1539 - 2456 281 ## PROTEIN SUPPORTED gi|225084369|ref|YP_002657150.1| ribosomal protein S16 - Prom 2643 - 2702 4.0 + Prom 2632 - 2691 5.1 4 2 Op 1 40/0.000 + CDS 2899 - 3333 58 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain + Prom 3368 - 3427 2.4 5 2 Op 2 . + CDS 3483 - 4751 185 ## COG0642 Signal transduction histidine kinase + Term 4951 - 4988 5.2 - Term 4937 - 4976 4.0 6 3 Tu 1 . - CDS 5196 - 5768 -235 ## 7 4 Tu 1 . + CDS 5832 - 6197 112 ## COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase + Term 6272 - 6326 16.9 + Prom 6760 - 6819 5.4 8 5 Tu 1 . + CDS 7058 - 8530 29 ## COG0076 Glutamate decarboxylase and related PLP-dependent proteins 9 6 Tu 1 . - CDS 9865 - 10755 298 ## COG0451 Nucleoside-diphosphate-sugar epimerases - Prom 10923 - 10982 1.7 - Term 10925 - 10958 -0.6 10 7 Op 1 2/0.143 - CDS 10985 - 11944 175 ## COG2207 AraC-type DNA-binding domain-containing proteins - Prom 12068 - 12127 5.2 11 7 Op 2 . - CDS 12163 - 12714 410 ## COG1309 Transcriptional regulator - Prom 12850 - 12909 10.6 + Prom 12792 - 12851 6.6 12 8 Tu 1 . + CDS 12878 - 13804 176 ## COG1893 Ketopantoate reductase + Term 13896 - 13940 1.7 + Prom 15376 - 15435 3.9 13 9 Tu 1 . + CDS 15459 - 15941 165 ## Mbar_A1563 hypothetical protein + Term 15967 - 16021 -0.4 14 10 Tu 1 . - CDS 16798 - 17511 334 ## COG2188 Transcriptional regulators 15 11 Tu 1 . - CDS 17672 - 18784 411 ## COG3964 Predicted amidohydrolase - Prom 18879 - 18938 7.8 + Prom 18930 - 18989 3.8 16 12 Tu 1 . + CDS 19055 - 19147 156 ## - Term 19137 - 19182 -0.2 17 13 Op 1 . - CDS 19306 - 20829 961 ## COG0477 Permeases of the major facilitator superfamily 18 13 Op 2 . - CDS 20876 - 23380 1691 ## COG0178 Excinuclease ATPase subunit - Prom 23559 - 23618 8.2 + Prom 23492 - 23551 6.3 19 14 Tu 1 . + CDS 23588 - 24082 455 ## COG1846 Transcriptional regulators + Term 24105 - 24160 7.0 - Term 24312 - 24351 6.6 20 15 Op 1 . - CDS 24361 - 25050 527 ## GYMC10_3813 hypothetical protein 21 15 Op 2 8/0.020 - CDS 25047 - 25946 898 ## COG1131 ABC-type multidrug transport system, ATPase component 22 15 Op 3 . - CDS 25943 - 26314 229 ## COG1725 Predicted transcriptional regulators - Prom 26421 - 26480 6.0 - Term 26471 - 26496 -0.5 23 16 Tu 1 . - CDS 26511 - 27227 821 ## COG0217 Uncharacterized conserved protein - Prom 27321 - 27380 4.2 - Term 27399 - 27440 3.0 24 17 Tu 1 . - CDS 27448 - 28893 1353 ## COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes - Prom 28978 - 29037 3.3 + Prom 29008 - 29067 7.8 25 18 Tu 1 . + CDS 29108 - 29293 236 ## + Term 29311 - 29347 6.4 + Prom 29308 - 29367 5.0 26 19 Tu 1 . + CDS 29457 - 30029 211 ## BBR47_49270 hypothetical protein - Term 30033 - 30097 10.2 27 20 Op 1 . - CDS 30183 - 30740 456 ## BCB4264_A2341 hypothetical protein - Prom 30773 - 30832 2.9 28 20 Op 2 . - CDS 30935 - 32236 1085 ## trd_1313 Stk1 - Prom 32287 - 32346 3.6 + Prom 32373 - 32432 4.0 29 21 Op 1 7/0.020 + CDS 32495 - 32974 571 ## COG3402 Uncharacterized conserved protein 30 21 Op 2 . + CDS 32967 - 34493 1167 ## COG3428 Predicted membrane protein + Term 34591 - 34629 6.2 + Prom 34768 - 34827 5.0 31 22 Op 1 . + CDS 34903 - 35319 376 ## COG1764 Predicted redox protein, regulator of disulfide bond formation + Prom 35323 - 35382 3.3 32 22 Op 2 . + CDS 35426 - 36589 1340 ## COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family + Term 36672 - 36725 18.6 - Term 36660 - 36713 17.2 33 23 Op 1 . - CDS 36937 - 37449 580 ## COG3663 G:T/U mismatch-specific DNA glycosylase 34 23 Op 2 . - CDS 37468 - 38148 722 ## COG2323 Predicted membrane protein - Prom 38297 - 38356 6.1 + Prom 38298 - 38357 6.7 35 24 Tu 1 . + CDS 38467 - 39549 970 ## COG0582 Integrase + Prom 39646 - 39705 4.8 36 25 Tu 1 . + CDS 39779 - 40333 278 ## PROTEIN SUPPORTED gi|90578021|ref|ZP_01233832.1| ribosomal protein alanine acetyltransferase + Term 40489 - 40521 -1.0 - Term 40356 - 40408 -0.6 37 26 Op 1 . - CDS 40460 - 41278 496 ## PTH_2570 hypothetical protein 38 26 Op 2 . - CDS 41346 - 42071 498 ## - Prom 42126 - 42185 5.6 + Prom 42215 - 42274 8.5 39 27 Op 1 40/0.000 + CDS 42357 - 43037 696 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 40 27 Op 2 . + CDS 43034 - 44413 1149 ## COG0642 Signal transduction histidine kinase 41 27 Op 3 . + CDS 44489 - 46723 1855 ## COG2409 Predicted drug exporters of the RND superfamily 42 27 Op 4 . + CDS 46750 - 47190 447 ## + Term 47211 - 47252 8.2 - Term 47199 - 47240 8.2 43 28 Tu 1 . - CDS 47249 - 48463 1304 ## COG0477 Permeases of the major facilitator superfamily - Prom 48516 - 48575 7.2 + Prom 48518 - 48577 9.6 44 29 Op 1 . + CDS 48668 - 49273 421 ## COG1309 Transcriptional regulator + Term 49293 - 49333 9.2 45 29 Op 2 . + CDS 49410 - 50279 585 ## COG3708 Uncharacterized protein conserved in bacteria + Term 50295 - 50347 11.6 - Term 50293 - 50324 3.4 46 30 Op 1 . - CDS 50465 - 51376 585 ## COG2421 Predicted acetamidase/formamidase 47 30 Op 2 . - CDS 51390 - 51560 81 ## - Prom 51682 - 51741 4.2 - Term 51725 - 51760 7.4 48 31 Op 1 . - CDS 51821 - 53506 2016 ## COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase - Prom 53555 - 53614 2.1 49 31 Op 2 . - CDS 53621 - 54352 295 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 - Prom 54421 - 54480 4.2 - Term 54494 - 54535 1.6 50 32 Tu 1 . - CDS 54607 - 57027 2594 ## COG3325 Chitinase - Prom 57227 - 57286 6.5 - Term 57244 - 57284 7.6 51 33 Op 1 3/0.143 - CDS 57331 - 57933 647 ## COG1309 Transcriptional regulator 52 33 Op 2 . - CDS 57935 - 58669 701 ## COG0491 Zn-dependent hydrolases, including glyoxylases - Prom 58705 - 58764 8.4 - Term 58775 - 58808 5.4 53 34 Tu 1 . - CDS 58847 - 60976 1821 ## COG0753 Catalase - Prom 61082 - 61141 6.6 - Term 61120 - 61158 5.3 54 35 Tu 1 . - CDS 61176 - 61283 158 ## - Prom 61474 - 61533 3.9 + Prom 61427 - 61486 5.8 55 36 Op 1 . + CDS 61531 - 62364 670 ## COG1082 Sugar phosphate isomerases/epimerases 56 36 Op 2 . + CDS 62370 - 63944 1502 ## GYMC10_1669 FAD dependent oxidoreductase + Term 64049 - 64083 4.0 + Prom 64065 - 64124 7.0 57 37 Op 1 . + CDS 64153 - 64410 223 ## 58 37 Op 2 . + CDS 64584 - 65771 1163 ## COG4552 Predicted acetyltransferase involved in intracellular survival and related acetyltransferases + Term 65810 - 65869 5.2 - Term 65798 - 65849 13.2 59 38 Op 1 . - CDS 65860 - 67407 1487 ## COG0665 Glycine/D-amino acid oxidases (deaminating) - Prom 67452 - 67511 1.8 - Term 67474 - 67507 2.2 60 38 Op 2 . - CDS 67517 - 67759 218 ## GYMC10_3875 hypothetical protein - Prom 67798 - 67857 4.1 - Term 67870 - 67915 7.2 61 39 Tu 1 . - CDS 67980 - 70277 2296 ## COG0620 Methionine synthase II (cobalamin-independent) - Prom 70385 - 70444 3.5 62 40 Op 1 . - CDS 70708 - 71472 720 ## COG2162 Arylamine N-acetyltransferase 63 40 Op 2 . - CDS 71490 - 72128 584 ## Exig_1455 hypothetical protein - Prom 72357 - 72416 5.1 + Prom 72211 - 72270 5.1 64 41 Op 1 . + CDS 72307 - 72417 80 ## 65 41 Op 2 . + CDS 72417 - 73586 1112 ## COG0642 Signal transduction histidine kinase - Term 73549 - 73594 12.1 66 42 Tu 1 . - CDS 73600 - 73965 302 ## COG0640 Predicted transcriptional regulators - Prom 73992 - 74051 4.7 - Term 74039 - 74083 14.6 67 43 Tu 1 . - CDS 74093 - 76246 2242 ## COG2217 Cation transport ATPase - Prom 76304 - 76363 6.8 + Prom 76263 - 76322 6.5 68 44 Tu 1 . + CDS 76484 - 77350 785 ## COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog + Term 77361 - 77410 11.5 + Prom 77383 - 77442 4.2 69 45 Tu 1 . + CDS 77466 - 77909 483 ## COG2128 Uncharacterized conserved protein + Term 77946 - 77986 6.6 70 46 Op 1 . + CDS 78126 - 79571 1307 ## GYMC10_5042 GerA spore germination protein 71 46 Op 2 . + CDS 79573 - 80721 652 ## GYMC10_5043 germination protein, Ger(X)C family 72 46 Op 3 . + CDS 80766 - 80957 247 ## 73 46 Op 4 . + CDS 80990 - 82093 899 ## GYMC10_5045 spore germination protein + Prom 82105 - 82164 3.5 74 47 Tu 1 . + CDS 82215 - 82709 311 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Term 82930 - 82956 0.3 + Prom 82854 - 82913 5.9 75 48 Op 1 . + CDS 83089 - 83781 480 ## COG0640 Predicted transcriptional regulators 76 48 Op 2 . + CDS 83859 - 84467 461 ## COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family + Term 84687 - 84737 -0.8 77 49 Tu 1 . - CDS 84496 - 85260 329 ## BpOF4_17430 hypothetical protein - Prom 85353 - 85412 3.4 - Term 85416 - 85479 -0.8 78 50 Tu 1 . - CDS 85523 - 85825 293 ## Bcell_0646 stress responsive alpha-beta barrel domain-containing protein 79 51 Op 1 . - CDS 85883 - 87304 1163 ## ROP_02890 hypothetical protein 80 51 Op 2 . - CDS 87356 - 88612 1341 ## COG2814 Arabinose efflux permease 81 51 Op 3 1/0.286 - CDS 88648 - 90270 1558 ## COG0119 Isopropylmalate/homocitrate/citramalate synthases - Term 90281 - 90313 0.4 82 52 Op 1 . - CDS 90353 - 91171 728 ## COG0500 SAM-dependent methyltransferases 83 52 Op 2 1/0.286 - CDS 91203 - 92963 1811 ## COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] 84 52 Op 3 . - CDS 93026 - 93712 805 ## COG0684 Demethylmenaquinone methyltransferase 85 52 Op 4 . - CDS 93734 - 94915 1074 ## COG0160 4-aminobutyrate aminotransferase and related aminotransferases 86 52 Op 5 . - CDS 94929 - 95849 721 ## COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III 87 52 Op 6 . - CDS 95884 - 97050 971 ## COG2124 Cytochrome P450 88 52 Op 7 . - CDS 97064 - 97324 357 ## 89 52 Op 8 . - CDS 97339 - 98898 1084 ## COG1020 Non-ribosomal peptide synthetase modules and related proteins - Prom 99052 - 99111 6.1 - Term 99101 - 99147 6.2 90 53 Op 1 . - CDS 99155 - 99775 500 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 91 53 Op 2 . - CDS 99931 - 100755 653 ## COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes - Prom 100859 - 100918 5.8 - Term 101104 - 101136 3.0 92 54 Tu 1 . - CDS 101176 - 101709 582 ## COG2259 Predicted membrane protein - Prom 101836 - 101895 6.3 - Term 101950 - 101979 -0.9 93 55 Op 1 . - CDS 102000 - 102677 531 ## Pjdr2_2731 hypothetical protein 94 55 Op 2 . - CDS 102650 - 103606 968 ## Pjdr2_2730 hypothetical protein 95 55 Op 3 . - CDS 103638 - 104048 178 ## COG3011 Uncharacterized protein conserved in bacteria - Prom 104134 - 104193 3.3 - Term 104177 - 104233 14.8 96 56 Op 1 12/0.000 - CDS 104252 - 104890 715 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 97 56 Op 2 . - CDS 104877 - 106226 1020 ## COG0642 Signal transduction histidine kinase - Prom 106310 - 106369 3.7 + Prom 106209 - 106268 2.9 98 57 Op 1 . + CDS 106376 - 106459 153 ## 99 57 Op 2 . + CDS 106449 - 106886 531 ## COG0782 Transcription elongation factor 100 57 Op 3 . + CDS 106973 - 107845 801 ## PPSC2_c2190 S-layer domain protein + Term 107853 - 107893 8.4 + Prom 107956 - 108015 6.6 101 58 Tu 1 . + CDS 108044 - 108568 403 ## PROTEIN SUPPORTED gi|229247674|ref|ZP_04371725.1| acetyltransferase, ribosomal protein N-acetylase - Term 108633 - 108670 1.1 102 59 Tu 1 . - CDS 108863 - 109276 369 ## COG3865 Uncharacterized protein conserved in bacteria - Prom 109338 - 109397 4.8 + Prom 109416 - 109475 4.7 103 60 Tu 1 . + CDS 109582 - 113967 3007 ## COG1649 Uncharacterized protein conserved in bacteria + Term 113999 - 114043 12.5 - Term 113986 - 114031 12.1 104 61 Tu 1 . - CDS 114076 - 114414 400 ## COG1733 Predicted transcriptional regulators - Prom 114561 - 114620 4.8 + Prom 114608 - 114667 4.1 105 62 Op 1 . + CDS 114813 - 115073 95 ## 106 62 Op 2 . + CDS 115145 - 115720 485 ## COG2249 Putative NADPH-quinone reductase (modulator of drug activity B) + Term 115750 - 115794 5.1 107 63 Tu 1 . - CDS 115846 - 116676 845 ## BSUW23_10060 hypothetical protein + Prom 117172 - 117231 5.4 108 64 Tu 1 . + CDS 117253 - 118818 1652 ## COG3325 Chitinase + Term 118848 - 118894 7.1 + Prom 118844 - 118903 6.0 109 65 Op 1 . + CDS 119024 - 119290 345 ## Pjdr2_2842 transcriptional regulator, ArsR family + Prom 119361 - 119420 5.8 110 65 Op 2 . + CDS 119453 - 120634 1275 ## COG2814 Arabinose efflux permease + Term 120655 - 120695 8.2 + Prom 120674 - 120733 7.2 111 66 Tu 1 . + CDS 120813 - 122267 1674 ## COG4222 Uncharacterized protein conserved in bacteria + Term 122279 - 122335 5.1 - Term 122275 - 122315 3.4 112 67 Tu 1 . - CDS 122397 - 123842 762 ## COG0477 Permeases of the major facilitator superfamily - Prom 123905 - 123964 1.8 - Term 123970 - 124014 9.2 113 68 Op 1 1/0.286 - CDS 124037 - 125008 653 ## COG2207 AraC-type DNA-binding domain-containing proteins - Prom 125028 - 125087 3.0 114 68 Op 2 . - CDS 125205 - 125645 346 ## COG1522 Transcriptional regulators - Prom 125710 - 125769 6.2 + Prom 125628 - 125687 3.0 115 69 Tu 1 . + CDS 125784 - 126548 213 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 + Term 126614 - 126654 5.4 - Term 126602 - 126642 9.2 116 70 Op 1 8/0.020 - CDS 126658 - 127524 696 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) 117 70 Op 2 11/0.020 - CDS 127579 - 128778 1266 ## COG0477 Permeases of the major facilitator superfamily - Prom 128849 - 128908 5.8 118 71 Tu 1 . - CDS 128928 - 129527 540 ## COG1309 Transcriptional regulator - Prom 129612 - 129671 4.8 - Term 129672 - 129710 6.8 119 72 Tu 1 . - CDS 129766 - 131643 1616 ## SCO3496 lyase precursor - Prom 131736 - 131795 2.0 - Term 131702 - 131733 0.2 120 73 Op 1 . - CDS 131818 - 132468 578 ## COG2755 Lysophospholipase L1 and related esterases 121 73 Op 2 . - CDS 132465 - 134732 1660 ## Phep_1707 hypothetical protein 122 73 Op 3 7/0.020 - CDS 134745 - 135620 1213 ## COG0395 ABC-type sugar transport system, permease component 123 73 Op 4 2/0.143 - CDS 135639 - 136595 942 ## COG4209 ABC-type polysaccharide transport system, permease component 124 73 Op 5 2/0.143 - CDS 136691 - 138316 1747 ## COG1653 ABC-type sugar transport system, periplasmic component - Prom 138421 - 138480 1.6 - Term 138327 - 138366 1.5 125 74 Tu 1 . - CDS 138522 - 140906 2277 ## COG2207 AraC-type DNA-binding domain-containing proteins - Prom 140930 - 140989 2.6 - Term 140946 - 140986 2.0 126 75 Tu 1 . - CDS 141028 - 142065 942 ## PSHAb0020 hypothetical protein - Prom 142120 - 142179 2.9 127 76 Tu 1 . + CDS 142568 - 143281 680 ## COG3826 Uncharacterized protein conserved in bacteria + Prom 143300 - 143359 4.3 128 77 Tu 1 . + CDS 143445 - 143981 212 ## PROTEIN SUPPORTED gi|125718620|ref|YP_001035753.1| ribosomal protein N-acetylase + Term 144000 - 144053 10.8 - Term 143997 - 144032 7.2 129 78 Op 1 . - CDS 144124 - 146283 2279 ## Pjdr2_1769 coagulation factor 5/8 type domain protein - Prom 146324 - 146383 1.9 130 78 Op 2 . - CDS 146391 - 147407 850 ## Cthe_3165 PpiC-type peptidyl-prolyl cis-trans isomerase - Prom 147507 - 147566 2.6 + Prom 147562 - 147621 4.6 131 79 Op 1 . + CDS 147664 - 148215 525 ## Aflv_2323 hypothetical protein 132 79 Op 2 3/0.143 + CDS 148240 - 149343 484 ## PROTEIN SUPPORTED gi|148988856|ref|ZP_01820271.1| 50S ribosomal protein L9 133 79 Op 3 . + CDS 149336 - 150547 1039 ## COG0477 Permeases of the major facilitator superfamily 134 80 Tu 1 . + CDS 150653 - 152254 1464 ## COG4716 Myosin-crossreactive antigen + Term 152268 - 152303 8.3 - Term 152170 - 152207 3.5 135 81 Tu 1 . - CDS 152306 - 153046 213 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 136 82 Tu 1 . + CDS 153347 - 154429 661 ## Bsph_2053 hypothetical protein + Term 154468 - 154522 17.1 - Term 154459 - 154507 12.5 137 83 Op 1 . - CDS 154539 - 155324 506 ## COG0726 Predicted xylanase/chitin deacetylase - Prom 155414 - 155473 3.0 - Term 155421 - 155448 -0.8 138 83 Op 2 . - CDS 155490 - 156326 750 ## COG2321 Predicted metalloprotease - Prom 156367 - 156426 5.2 - Term 156453 - 156493 7.3 139 84 Tu 1 . - CDS 156533 - 156949 427 ## COG3607 Predicted lactoylglutathione lyase - Prom 157002 - 157061 4.2 140 85 Op 1 . + CDS 157189 - 157893 203 ## COG2169 Adenosine deaminase 141 85 Op 2 . + CDS 157862 - 158680 324 ## COG1533 DNA repair photolyase + Term 158715 - 158764 13.1 - Term 158775 - 158811 1.2 142 86 Tu 1 . - CDS 158832 - 159251 410 ## COG2764 Uncharacterized protein conserved in bacteria 143 87 Tu 1 . - CDS 159360 - 160154 578 ## COG2207 AraC-type DNA-binding domain-containing proteins - Prom 160224 - 160283 4.2 - Term 160255 - 160297 3.1 144 88 Tu 1 . - CDS 160332 - 161888 1611 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains - Prom 161920 - 161979 5.3 + Prom 162021 - 162080 4.6 145 89 Tu 1 . + CDS 162250 - 163614 1226 ## PPE_03267 hypothetical protein - Term 163619 - 163657 9.3 146 90 Tu 1 . - CDS 163668 - 163997 385 ## BCAH820_3076 hypothetical protein - Prom 164039 - 164098 5.1 + Prom 163998 - 164057 4.2 147 91 Tu 1 . + CDS 164112 - 164483 107 ## Bsel_0967 hypothetical protein + Term 164616 - 164657 -0.8 + Prom 164487 - 164546 3.7 148 92 Tu 1 . + CDS 164678 - 165556 360 ## COG0384 Predicted epimerase, PhzC/PhzF homolog + Term 165570 - 165620 6.3 - Term 165813 - 165845 3.2 149 93 Op 1 . - CDS 165961 - 166923 731 ## COG0451 Nucleoside-diphosphate-sugar epimerases 150 93 Op 2 . - CDS 166994 - 167515 536 ## GYMC10_1181 transcriptional regulator, TetR family - Prom 167569 - 167628 6.1 - Term 167608 - 167649 6.5 151 94 Tu 1 . - CDS 167692 - 168741 664 ## COG1960 Acyl-CoA dehydrogenases - Prom 168794 - 168853 4.1 + Prom 169121 - 169180 5.7 152 95 Tu 1 . + CDS 169212 - 170504 610 ## PROTEIN SUPPORTED gi|149914878|ref|ZP_01903407.1| 30S ribosomal protein S2 + Term 170543 - 170607 12.4 - Term 170611 - 170652 8.4 153 96 Tu 1 . - CDS 170680 - 171957 1268 ## COG1914 Mn2+ and Fe2+ transporters of the NRAMP family - Prom 172019 - 172078 5.4 + Prom 172174 - 172233 7.3 154 97 Tu 1 . + CDS 172291 - 173205 817 ## LBA1927 hypothetical protein + Term 173242 - 173285 11.5 - Term 173223 - 173282 12.0 155 98 Op 1 2/0.143 - CDS 173287 - 175842 2314 ## COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) 156 98 Op 2 . - CDS 175865 - 176476 669 ## COG3230 Heme oxygenase - Prom 176670 - 176729 5.5 - Term 176691 - 176731 7.5 157 99 Tu 1 . - CDS 176742 - 178559 2148 ## COG0531 Amino acid transporters - Prom 178629 - 178688 6.7 - Term 178681 - 178718 1.1 158 100 Tu 1 . - CDS 178912 - 179811 711 ## COG0640 Predicted transcriptional regulators - Prom 179908 - 179967 8.0 + Prom 179880 - 179939 5.0 159 101 Tu 1 . + CDS 180009 - 181283 1373 ## COG0477 Permeases of the major facilitator superfamily + Term 181295 - 181330 5.0 - Term 181283 - 181318 5.0 160 102 Tu 1 . - CDS 181367 - 182137 660 ## COG1349 Transcriptional regulators of sugar metabolism - Prom 182190 - 182249 4.8 + Prom 182296 - 182355 4.8 161 103 Tu 1 . + CDS 182463 - 183323 781 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily + Term 183475 - 183502 0.1 - Term 183449 - 183504 12.0 162 104 Tu 1 . - CDS 183530 - 184429 884 ## PPSC2_c3877 chitosanase A - Prom 184676 - 184735 2.9 - Term 184641 - 184680 5.0 163 105 Op 1 . - CDS 184781 - 185377 426 ## COG1309 Transcriptional regulator 164 105 Op 2 . - CDS 185424 - 186911 1266 ## BcerKBAB4_5692 hypothetical protein - Prom 186960 - 187019 3.7 - Term 187073 - 187111 9.1 165 106 Op 1 . - CDS 187124 - 187672 496 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - Prom 187710 - 187769 2.8 - Term 187724 - 187759 0.0 166 106 Op 2 . - CDS 187808 - 189013 1193 ## COG0477 Permeases of the major facilitator superfamily - Prom 189097 - 189156 1.7 - Term 189127 - 189161 5.5 167 107 Tu 1 . - CDS 189368 - 190360 867 ## COG2207 AraC-type DNA-binding domain-containing proteins - Prom 190411 - 190470 4.8 + Prom 190494 - 190553 3.9 168 108 Tu 1 . + CDS 190587 - 191741 1179 ## COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes + Term 191970 - 192010 6.6 - Term 192190 - 192228 8.6 169 109 Op 1 . - CDS 192247 - 193806 1217 ## COG0642 Signal transduction histidine kinase - Term 193843 - 193871 3.0 170 109 Op 2 . - CDS 193970 - 194812 882 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase - Prom 194852 - 194911 3.3 - Term 194984 - 195031 13.4 171 110 Op 1 1/0.286 - CDS 195063 - 196295 1246 ## COG2273 Beta-glucanase/Beta-glucan synthetase - Prom 196326 - 196385 3.7 172 110 Op 2 . - CDS 196421 - 197320 958 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily - Prom 197557 - 197616 2.9 + Prom 197516 - 197575 4.1 173 111 Tu 1 8/0.020 + CDS 197630 - 198628 992 ## COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component + Term 198688 - 198730 6.2 + Prom 198681 - 198740 6.8 174 112 Tu 1 . + CDS 198780 - 200498 1032 ## COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component + Term 200503 - 200540 8.1 - Term 200491 - 200528 8.1 175 113 Op 1 . - CDS 200551 - 201354 206 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 176 113 Op 2 . - CDS 201551 - 203302 255 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 177 113 Op 3 20/0.000 - CDS 203357 - 204406 1007 ## COG0609 ABC-type Fe3+-siderophore transport system, permease component 178 113 Op 4 . - CDS 204408 - 205460 1071 ## COG0609 ABC-type Fe3+-siderophore transport system, permease component - Prom 205526 - 205585 5.0 - Term 205870 - 205906 2.5 179 114 Tu 1 . - CDS 205939 - 209223 3528 ## COG3401 Fibronectin type 3 domain-containing protein - Prom 209400 - 209459 4.7 - Term 209563 - 209602 4.1 180 115 Tu 1 . - CDS 209638 - 210699 940 ## COG0820 Predicted Fe-S-cluster redox enzyme - Prom 210772 - 210831 3.1 181 116 Op 1 1/0.286 - CDS 210865 - 211068 180 ## COG3910 Predicted ATPase 182 116 Op 2 . - CDS 211092 - 211625 328 ## COG3910 Predicted ATPase - Prom 211689 - 211748 2.2 - Term 211710 - 211744 4.4 183 117 Tu 1 . - CDS 211753 - 211920 121 ## COG2318 Uncharacterized protein conserved in bacteria - Prom 212147 - 212206 3.8 184 118 Tu 1 . + CDS 212477 - 212710 112 ## Bsel_0967 hypothetical protein + Term 212874 - 212913 -1.0 + Prom 212822 - 212881 8.3 185 119 Tu 1 . + CDS 212988 - 213218 80 ## OB3527 hypothetical protein + Term 213278 - 213325 5.0 186 120 Tu 1 . + CDS 214166 - 214621 -53 ## + Term 214655 - 214712 11.2 - Term 214856 - 214909 15.5 187 121 Op 1 . - CDS 214922 - 215926 685 ## COG2311 Predicted membrane protein 188 121 Op 2 36/0.000 - CDS 215931 - 217874 1372 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 189 121 Op 3 4/0.122 - CDS 217849 - 218619 271 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 - Prom 218678 - 218737 3.8 - Term 218797 - 218837 11.3 190 122 Op 1 40/0.000 - CDS 218857 - 219849 941 ## COG0642 Signal transduction histidine kinase 191 122 Op 2 . - CDS 219846 - 220547 716 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 220586 - 220645 4.1 - Term 220739 - 220777 5.7 192 123 Tu 1 . - CDS 220801 - 222069 1134 ## COG3979 Uncharacterized protein contain chitin-binding domain type 3 - Prom 222143 - 222202 5.0 - Term 222229 - 222266 0.3 193 124 Tu 1 . - CDS 222330 - 223124 578 ## COG2207 AraC-type DNA-binding domain-containing proteins - Prom 223209 - 223268 3.7 + Prom 223168 - 223227 8.2 194 125 Tu 1 . + CDS 223274 - 224059 261 ## PROTEIN SUPPORTED gi|90020817|ref|YP_526644.1| ribosomal protein S16 + Term 224227 - 224259 4.6 - Term 224178 - 224211 2.1 195 126 Op 1 . - CDS 224236 - 224943 176 ## PROTEIN SUPPORTED gi|182701677|ref|ZP_02955077.1| ribosomal protein L29 196 126 Op 2 . - CDS 225009 - 225587 656 ## BMB171_C0930 TetR family transcriptional regulator - Prom 225639 - 225698 8.2 - Term 225692 - 225733 8.6 197 127 Tu 1 . - CDS 225759 - 227510 1503 ## GYMC10_3840 RNA polymerase, sigma-24 subunit, ECF subfamily - Prom 227607 - 227666 4.1 + Prom 227601 - 227660 4.7 198 128 Tu 1 . + CDS 227785 - 228189 218 ## 199 129 Op 1 . - CDS 228220 - 228738 646 ## COG0242 N-formylmethionyl-tRNA deformylase 200 129 Op 2 . - CDS 228769 - 229026 237 ## BBR47_08660 hypothetical protein - Prom 229055 - 229114 4.8 + Prom 229150 - 229209 7.2 201 130 Tu 1 . + CDS 229273 - 231087 1199 ## COG4533 ABC-type uncharacterized transport system, periplasmic component + Term 231152 - 231185 5.4 - Term 231098 - 231143 11.1 202 131 Tu 1 . - CDS 231178 - 231396 410 ## PPE_03792 hypothetical protein - Prom 231594 - 231653 2.8 + Prom 231415 - 231474 5.1 203 132 Op 1 . + CDS 231560 - 231922 410 ## PPE_03791 hypothetical protein 204 132 Op 2 . + CDS 231859 - 232113 218 ## PPE_03790 hypothetical protein + Term 232136 - 232199 5.4 + Prom 232144 - 232203 4.4 205 133 Tu 1 . + CDS 232321 - 232794 521 ## Tthe_2043 hypothetical protein + Term 232796 - 232845 12.3 - Term 232793 - 232825 5.0 206 134 Op 1 1/0.286 - CDS 232844 - 233953 910 ## COG0167 Dihydroorotate dehydrogenase - Term 233970 - 234017 -0.7 207 134 Op 2 . - CDS 234027 - 234677 718 ## COG0461 Orotate phosphoribosyltransferase 208 134 Op 3 . - CDS 234746 - 235765 432 ## PROTEIN SUPPORTED gi|148988856|ref|ZP_01820271.1| 50S ribosomal protein L9 209 134 Op 4 . - CDS 235767 - 236966 1147 ## COG0006 Xaa-Pro aminopeptidase 210 134 Op 5 . - CDS 236970 - 237341 387 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 211 134 Op 6 . - CDS 237355 - 238809 1441 ## COG2368 Aromatic ring hydroxylase - Prom 239005 - 239064 5.9 + Prom 238862 - 238921 5.4 212 135 Tu 1 . + CDS 239072 - 239545 599 ## COG0782 Transcription elongation factor + Term 239566 - 239624 25.1 - Term 239554 - 239612 22.4 213 136 Op 1 . - CDS 239750 - 240652 682 ## COG2819 Predicted hydrolase of the alpha/beta superfamily 214 136 Op 2 35/0.000 - CDS 240654 - 241508 801 ## COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components 215 136 Op 3 20/0.000 - CDS 241524 - 242546 1160 ## COG0609 ABC-type Fe3+-siderophore transport system, permease component 216 136 Op 4 33/0.000 - CDS 242539 - 243546 1041 ## COG0609 ABC-type Fe3+-siderophore transport system, permease component 217 136 Op 5 . - CDS 243574 - 244554 1190 ## COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component 218 136 Op 6 . - CDS 244561 - 245361 707 ## COG2819 Predicted hydrolase of the alpha/beta superfamily - Prom 245467 - 245526 4.7 219 137 Op 1 . - CDS 245530 - 247164 1141 ## COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component 220 137 Op 2 . - CDS 247157 - 247432 104 ## - Prom 247487 - 247546 5.3 221 138 Tu 1 . - CDS 247584 - 248078 156 ## COG0477 Permeases of the major facilitator superfamily - Prom 248313 - 248372 2.6 - Term 248603 - 248633 1.1 222 139 Tu 1 . - CDS 248849 - 249091 101 ## GYMC10_3544 transcriptional regulator, TetR family - Prom 249170 - 249229 2.4 - Term 249653 - 249686 4.5 223 140 Tu 1 . - CDS 249710 - 250201 84 ## BpOF4_03600 hypothetical protein - Prom 250270 - 250329 5.7 224 141 Tu 1 . - CDS 251557 - 251826 125 ## - Prom 252012 - 252071 11.8 - Term 252422 - 252464 1.1 225 142 Tu 1 . - CDS 252618 - 253100 -109 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - Prom 253143 - 253202 3.1 226 143 Op 1 . - CDS 253331 - 254524 1402 ## COG2814 Arabinose efflux permease - Prom 254563 - 254622 3.4 227 143 Op 2 . - CDS 254624 - 255178 362 ## COG1859 RNA:NAD 2'-phosphotransferase 228 143 Op 3 . - CDS 255184 - 256608 1167 ## COG1690 Uncharacterized conserved protein - Prom 256638 - 256697 3.5 - Term 256651 - 256683 3.2 229 144 Tu 1 . - CDS 256741 - 256812 91 ## - Prom 256839 - 256898 6.4 + Prom 256882 - 256941 13.3 230 145 Op 1 . + CDS 257036 - 258010 681 ## Daud_1216 copper amine oxidase domain-containing protein + Prom 258017 - 258076 5.1 231 145 Op 2 . + CDS 258108 - 258281 296 ## Pjdr2_5422 hypothetical protein + Term 258288 - 258348 17.2 - Term 258280 - 258324 0.1 232 146 Op 1 . - CDS 258371 - 259444 1245 ## COG2876 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase - Term 259470 - 259510 3.5 233 146 Op 2 . - CDS 259523 - 259717 71 ## - Prom 259758 - 259817 7.3 - Term 259778 - 259818 -0.8 234 147 Tu 1 . - CDS 259853 - 260965 992 ## GYMC10_5000 hypothetical protein - Prom 261046 - 261105 6.0 - Term 261058 - 261105 8.8 235 148 Tu 1 . - CDS 261112 - 262071 1061 ## COG3458 Acetyl esterase (deacetylase) - Prom 262114 - 262173 3.3 236 149 Op 1 . - CDS 262179 - 263006 1056 ## COG1968 Uncharacterized bacitracin resistance protein 237 149 Op 2 24/0.000 - CDS 263022 - 263756 795 ## COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component 238 149 Op 3 3/0.143 - CDS 263749 - 264669 324 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 239 149 Op 4 40/0.000 - CDS 264752 - 265807 1028 ## COG0642 Signal transduction histidine kinase 240 149 Op 5 . - CDS 265804 - 266520 769 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 266585 - 266644 3.7 - Term 266678 - 266718 7.5 241 150 Op 1 49/0.000 - CDS 266739 - 267653 942 ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 242 150 Op 2 6/0.061 - CDS 267666 - 268619 282 ## PROTEIN SUPPORTED gi|167855436|ref|ZP_02478201.1| 30S ribosomal protein S21 243 150 Op 3 44/0.000 - CDS 268669 - 269688 791 ## COG4608 ABC-type oligopeptide transport system, ATPase component 244 150 Op 4 . - CDS 269685 - 270695 904 ## COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component 245 151 Op 1 2/0.143 - CDS 270826 - 272238 1373 ## COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase 246 151 Op 2 . - CDS 272254 - 273897 1671 ## COG0747 ABC-type dipeptide transport system, periplasmic component 247 151 Op 3 . - CDS 273915 - 274484 355 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 248 151 Op 4 13/0.000 - CDS 274526 - 276601 887 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 249 151 Op 5 49/0.000 - CDS 276635 - 277543 897 ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 250 151 Op 6 38/0.000 - CDS 277587 - 278513 933 ## COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 251 151 Op 7 4/0.122 - CDS 278529 - 280199 1478 ## COG0747 ABC-type dipeptide transport system, periplasmic component - Prom 280356 - 280415 10.1 - Term 280412 - 280447 4.2 252 152 Tu 1 . - CDS 280463 - 281758 1077 ## COG0477 Permeases of the major facilitator superfamily - Prom 281862 - 281921 1.6 + Prom 281826 - 281885 4.5 253 153 Tu 1 . + CDS 281933 - 282754 709 ## BMD_2235 hypothetical protein + Term 282777 - 282833 21.4 - Term 282769 - 282814 13.1 254 154 Op 1 . - CDS 282844 - 284019 1340 ## COG2814 Arabinose efflux permease 255 154 Op 2 . - CDS 284064 - 285143 1050 ## MDS_2893 putative oxidoreductase 256 154 Op 3 . - CDS 285164 - 285661 509 ## MDS_2892 acetyltransferase 257 154 Op 4 . - CDS 285728 - 286945 1224 ## COG0156 7-keto-8-aminopelargonate synthetase and related enzymes - Prom 287163 - 287222 6.3 - Term 287268 - 287312 10.1 258 155 Tu 1 . - CDS 287354 - 288250 626 ## COG0583 Transcriptional regulator - Prom 288274 - 288333 7.9 + Prom 288287 - 288346 4.9 259 156 Tu 1 . + CDS 288385 - 289125 186 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 + Term 289128 - 289161 1.5 + Prom 289348 - 289407 5.8 260 157 Tu 1 . + CDS 289506 - 290486 40 ## gi|169347130|ref|ZP_02866072.1| hypothetical protein CPC_2628 + Term 290554 - 290612 8.0 - Term 290543 - 290598 9.3 261 158 Tu 1 . - CDS 290802 - 291296 122 ## gi|298372594|ref|ZP_06982584.1| hypothetical protein HMPREF0156_00638 - Prom 291374 - 291433 3.8 + Prom 291834 - 291893 5.9 262 159 Tu 1 . + CDS 292066 - 292245 141 ## CKR_0415 hypothetical protein - Term 292510 - 292555 9.3 263 160 Tu 1 . - CDS 292567 - 293385 265 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) - Prom 293450 - 293509 3.7 264 161 Tu 1 . - CDS 293605 - 294471 538 ## COG1609 Transcriptional regulators + Prom 294617 - 294676 4.6 265 162 Op 1 1/0.286 + CDS 294702 - 296033 802 ## COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis 266 162 Op 2 1/0.286 + CDS 296017 - 296874 735 ## COG0561 Predicted hydrolases of the HAD superfamily 267 162 Op 3 1/0.286 + CDS 296937 - 297992 949 ## COG0673 Predicted dehydrogenases and related proteins 268 162 Op 4 . + CDS 298028 - 299227 1001 ## COG0738 Fucose permease - Term 299260 - 299292 4.0 269 163 Tu 1 . - CDS 299389 - 301104 250 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P - Prom 301272 - 301331 5.1 270 164 Tu 1 . + CDS 301706 - 303052 1137 ## COG3397 Uncharacterized protein conserved in bacteria + Term 303071 - 303111 8.1 - Term 303058 - 303099 8.3 271 165 Tu 1 . - CDS 303233 - 304180 746 ## COG0583 Transcriptional regulator - Prom 304229 - 304288 4.5 + Prom 304214 - 304273 6.5 272 166 Tu 1 . + CDS 304321 - 305328 715 ## COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases - Term 305559 - 305593 4.5 273 167 Tu 1 . - CDS 305650 - 306924 904 ## COG3669 Alpha-L-fucosidase - Prom 307026 - 307085 5.9 274 168 Tu 1 . - CDS 307143 - 308090 440 ## PROTEIN SUPPORTED gi|116517028|ref|YP_816079.1| glucokinase - Prom 308247 - 308306 2.1 275 169 Tu 1 . - CDS 308441 - 309133 462 ## COG3142 Uncharacterized protein involved in copper resistance 276 170 Op 1 . - CDS 309302 - 310771 1041 ## COG0260 Leucyl aminopeptidase 277 170 Op 2 44/0.000 - CDS 310810 - 311796 782 ## COG4608 ABC-type oligopeptide transport system, ATPase component 278 170 Op 3 44/0.000 - CDS 311793 - 312794 647 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 279 170 Op 4 49/0.000 - CDS 312809 - 313720 805 ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 280 170 Op 5 38/0.000 - CDS 313733 - 314659 774 ## COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components - Term 314681 - 314729 6.1 281 170 Op 6 . - CDS 314842 - 316443 1403 ## COG0747 ABC-type dipeptide transport system, periplasmic component 282 170 Op 7 . - CDS 316516 - 317532 892 ## COG4448 L-asparaginase II 283 170 Op 8 . - CDS 317586 - 318743 304 ## PROTEIN SUPPORTED gi|163762640|ref|ZP_02169704.1| ribosomal protein L33 - Prom 318919 - 318978 7.1 + Prom 319273 - 319332 4.5 284 171 Op 1 12/0.000 + CDS 319382 - 320743 1226 ## COG0161 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase 285 171 Op 2 10/0.020 + CDS 320740 - 321552 486 ## COG0132 Dethiobiotin synthetase 286 171 Op 3 3/0.143 + CDS 321558 - 322736 812 ## COG0156 7-keto-8-aminopelargonate synthetase and related enzymes 287 171 Op 4 5/0.082 + CDS 322733 - 323665 348 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) 288 171 Op 5 . + CDS 323628 - 324563 428 ## COG0500 SAM-dependent methyltransferases 289 172 Tu 1 . + CDS 324935 - 326287 1190 ## COG3397 Uncharacterized protein conserved in bacteria + Term 326334 - 326384 5.1 - Term 326320 - 326370 13.0 290 173 Op 1 . - CDS 326533 - 328158 1530 ## COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes - Term 328235 - 328265 -0.9 291 173 Op 2 . - CDS 328287 - 328436 231 ## PROTEIN SUPPORTED gi|192813127|ref|ZP_03041792.1| ribosomal protein L33 292 173 Op 3 . - CDS 328474 - 329682 1183 ## COG0523 Putative GTPases (G3E family) - Prom 329841 - 329900 5.7 - Term 329984 - 330019 5.1 293 174 Tu 1 . - CDS 330073 - 331089 975 ## COG1226 Kef-type K+ transport systems, predicted NAD-binding component - Prom 331114 - 331173 1.9 + Prom 331064 - 331123 2.1 294 175 Op 1 . + CDS 331175 - 331465 59 ## 295 175 Op 2 . + CDS 331512 - 332798 1247 ## COG0172 Seryl-tRNA synthetase + Term 332827 - 332864 7.1 - Term 332790 - 332823 4.1 296 176 Op 1 7/0.020 - CDS 332970 - 334565 1624 ## COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain 297 176 Op 2 1/0.286 - CDS 334572 - 336458 1863 ## COG2972 Predicted signal transduction protein with a C-terminal ATPase domain - Prom 336514 - 336573 2.1 - Term 336548 - 336591 9.4 298 177 Op 1 14/0.000 - CDS 336596 - 338269 2133 ## COG1653 ABC-type sugar transport system, periplasmic component 299 177 Op 2 7/0.020 - CDS 338310 - 339197 926 ## COG0395 ABC-type sugar transport system, permease component 300 177 Op 3 . - CDS 339215 - 340177 793 ## COG4209 ABC-type polysaccharide transport system, permease component - Prom 340273 - 340332 2.4 - Term 340695 - 340755 1.9 301 178 Tu 1 . - CDS 340775 - 341941 1115 ## COG0726 Predicted xylanase/chitin deacetylase - Prom 342034 - 342093 5.9 + Prom 342021 - 342080 5.4 302 179 Tu 1 . + CDS 342206 - 342337 86 ## + Term 342379 - 342423 8.0 + Prom 342461 - 342520 2.6 303 180 Tu 1 . + CDS 342553 - 344502 1825 ## COG1657 Squalene cyclase + Term 344503 - 344538 5.6 - Term 344491 - 344524 4.4 304 181 Tu 1 . - CDS 344539 - 344793 306 ## - Prom 344842 - 344901 2.4 305 182 Tu 1 . - CDS 344950 - 346980 2270 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 - Term 347279 - 347329 15.1 306 183 Tu 1 . - CDS 347375 - 350455 3036 ## COG0060 Isoleucyl-tRNA synthetase + Prom 350761 - 350820 4.8 307 184 Tu 1 . + CDS 350972 - 351724 726 ## COG2162 Arylamine N-acetyltransferase + Term 351735 - 351773 4.2 - Term 351917 - 351955 8.5 308 185 Tu 1 . - CDS 352049 - 352594 692 ## COG0655 Multimeric flavodoxin WrbA - Prom 352719 - 352778 4.0 + Prom 352683 - 352742 5.4 309 186 Tu 1 . + CDS 352809 - 353759 253 ## PROTEIN SUPPORTED gi|149913192|ref|ZP_01901726.1| 50S ribosomal protein L35 310 187 Tu 1 . - CDS 353749 - 354891 1235 ## COG1929 Glycerate kinase - Term 355204 - 355239 7.2 311 188 Tu 1 . - CDS 355259 - 357553 2546 ## COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases - Prom 357663 - 357722 8.1 - Term 357757 - 357794 4.0 312 189 Op 1 . - CDS 357864 - 358268 590 ## COG2259 Predicted membrane protein - Term 358314 - 358342 1.6 313 189 Op 2 . - CDS 358362 - 359210 665 ## BMQ_3167 peptidase, M56 domain-containing protein (EC:3.4.24.-) 314 189 Op 3 . - CDS 359212 - 359628 434 ## COG3682 Predicted transcriptional regulator + Prom 359563 - 359622 5.3 315 190 Tu 1 . + CDS 359778 - 360158 421 ## COG1733 Predicted transcriptional regulators + Term 360259 - 360297 5.3 - Term 360245 - 360285 4.1 316 191 Tu 1 . - CDS 360345 - 360980 803 ## COG1182 Acyl carrier protein phosphodiesterase - Prom 361071 - 361130 3.3 - Term 361105 - 361149 11.7 317 192 Op 1 . - CDS 361168 - 361770 599 ## COG3560 Predicted oxidoreductase related to nitroreductase - Prom 361838 - 361897 2.7 318 192 Op 2 . - CDS 361955 - 362578 428 ## BBR47_14730 hypothetical protein - Prom 362656 - 362715 4.9 + Prom 362663 - 362722 8.1 319 193 Op 1 . + CDS 362763 - 363491 651 ## COG0789 Predicted transcriptional regulators 320 193 Op 2 . + CDS 363546 - 365081 1262 ## BC0635 spore germination protein KA 321 193 Op 3 . + CDS 365071 - 366168 1166 ## BcerKBAB4_0547 spore germination protein 322 193 Op 4 . + CDS 366165 - 366962 875 ## BCG9842_B4668 spore germination protein GerKC 323 193 Op 5 . + CDS 366959 - 367288 304 ## BCG9842_B4668 spore germination protein GerKC 324 194 Op 1 . - CDS 367316 - 368110 256 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 325 194 Op 2 . - CDS 368133 - 368651 440 ## OB0286 hypothetical protein 326 194 Op 3 . - CDS 368740 - 368844 118 ## - Prom 368901 - 368960 3.1 327 195 Tu 1 . - CDS 369056 - 370138 1213 ## COG4767 Glycopeptide antibiotics resistance protein - Prom 370166 - 370225 4.9 + Prom 370458 - 370517 2.8 328 196 Op 1 19/0.000 + CDS 370568 - 371365 810 ## COG1291 Flagellar motor component 329 196 Op 2 . + CDS 371358 - 372158 618 ## COG1360 Flagellar motor protein + Term 372170 - 372211 6.2 - Term 372158 - 372199 6.2 330 197 Tu 1 . - CDS 372369 - 373421 580 ## PPE_02441 hypothetical protein - Prom 373465 - 373524 5.2 - Term 373584 - 373614 1.0 331 198 Tu 1 . - CDS 373632 - 374630 1042 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily - Prom 374732 - 374791 4.1 - Term 375068 - 375104 1.7 332 199 Tu 1 . - CDS 375190 - 375402 58 ## - Prom 375455 - 375514 3.6 333 200 Tu 1 . - CDS 376049 - 376435 160 ## gi|325661459|ref|ZP_08150085.1| hypothetical protein HMPREF0490_00819 - Prom 376607 - 376666 3.6 334 201 Tu 1 . - CDS 377586 - 378095 205 ## COG0587 DNA polymerase III, alpha subunit - Prom 378195 - 378254 5.8 335 202 Tu 1 . - CDS 378575 - 378778 78 ## gi|325661459|ref|ZP_08150085.1| hypothetical protein HMPREF0490_00819 - Prom 378894 - 378953 9.6 + Prom 378836 - 378895 8.7 336 203 Tu 1 . + CDS 378925 - 379089 125 ## - Term 379800 - 379842 -0.8 337 204 Tu 1 . - CDS 380060 - 380506 147 ## COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 - Prom 380550 - 380609 3.5 - Term 380603 - 380652 0.6 338 205 Tu 1 . - CDS 380849 - 381319 -18 ## COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair - Prom 381529 - 381588 3.4 339 206 Tu 1 . - CDS 381607 - 381768 107 ## - Prom 381803 - 381862 1.7 + Prom 382080 - 382139 6.4 340 207 Op 1 . + CDS 382297 - 382830 -243 ## + Term 382839 - 382899 8.1 341 207 Op 2 . + CDS 382912 - 383262 125 ## gi|229000840|ref|ZP_04160341.1| hypothetical protein bmyco0003_53480 342 208 Op 1 . - CDS 383289 - 383507 80 ## 343 208 Op 2 . - CDS 383509 - 383883 64 ## COG0207 Thymidylate synthase 344 208 Op 3 . - CDS 383979 - 384065 102 ## - Prom 384290 - 384349 3.9 - Term 384329 - 384367 5.3 345 209 Tu 1 . - CDS 384376 - 384660 139 ## COG4696 Uncharacterized protein conserved in bacteria 346 210 Tu 1 . - CDS 385051 - 385545 -53 ## BSU20050 SPbeta phage endodeoxyribonuclease - Prom 385619 - 385678 3.0 347 211 Op 1 24/0.000 - CDS 385774 - 386703 265 ## COG0208 Ribonucleotide reductase, beta subunit 348 211 Op 2 18/0.000 - CDS 386777 - 387040 87 ## COG0209 Ribonucleotide reductase, alpha subunit - Prom 387111 - 387170 4.8 349 211 Op 3 . - CDS 388869 - 389222 140 ## COG1780 Protein involved in ribonucleotide reduction - Prom 389243 - 389302 4.0 350 212 Tu 1 . - CDS 389316 - 389555 158 ## 351 213 Tu 1 . + CDS 389885 - 390028 63 ## 352 214 Tu 1 . - CDS 390420 - 390698 81 ## - Prom 390767 - 390826 3.8 353 215 Op 1 . - CDS 390940 - 391125 126 ## 354 215 Op 2 . - CDS 391204 - 391476 126 ## 355 215 Op 3 . - CDS 391473 - 391949 134 ## 356 215 Op 4 . - CDS 391979 - 392158 164 ## 357 215 Op 5 . - CDS 392186 - 392530 178 ## 358 215 Op 6 . - CDS 392542 - 392607 60 ## - Prom 392628 - 392687 4.2 + Prom 392953 - 393012 7.8 359 216 Op 1 . + CDS 393235 - 393723 150 ## GYMC10_1083 hypothetical protein 360 216 Op 2 . + CDS 393782 - 394324 -83 ## GYMC10_1082 hypothetical protein + Term 394335 - 394379 4.6 - Term 395070 - 395109 1.2 361 217 Tu 1 . - CDS 395119 - 395565 60 ## BAMF_0602 hypothetical protein - Prom 395640 - 395699 5.6 362 218 Tu 1 . - CDS 396574 - 396795 99 ## - Prom 396822 - 396881 3.5 Predicted protein(s) >gi|333606354|gb|AFDH01000056.1| GENE 1 46 - 777 127 243 aa, chain - ## HITS:1 COG:BH0447 KEGG:ns NR:ns ## COG: BH0447 COG4200 # Protein_GI_number: 15613010 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 5 168 6 168 247 72 28.0 6e-13 MKRSISAEWLKLRHSRISLVIAVLPIISLLIGCANYYLNQGALQNGWYSLWIQVSLFYGV FFLPILIAICCSYICRLEHLNRNWNMVMTSPVSVASVFLAKWIVVSILILFAQALFLGLY WLAGTLLSLPGPFPVETIGWTIRGWYACMSISALQLRLSLQIRSFATPIGISLCAVFIGL GMYIAKLGILFPFSLLNIGMRVMSQDKLTDMQIFLFWMINLAFIIIFASMSIRRLKSKDI VSS >gi|333606354|gb|AFDH01000056.1| GENE 2 790 - 1542 273 250 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_3917 NR:ns ## KEGG: GYMC10_3917 # Name: not_defined # Def: ABC transporter permease # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 250 1 250 250 404 86.0 1e-111 MIKLLGLEYFKIRRKKIWIMIILFLVVEMLWAFMSISRSIASNPDHAVWESILFSISSMN GFFMPIISAVVVSRICDMEHKGSTWKMLVATNVGRRHLYAAKYISTNSLLLYGICVQALF IIVFGVIKDFPGTFPIDLLFRFIGGTLLTTLAVTALQQWISFAIKNQAFALCIGMLGGFI GMTAGLFPAAIRHIFIWSYYLDLSPVTYRYAESAGAYLVQPVSFGIVVGALIMTVLFYIA GNIHVSRQEI >gi|333606354|gb|AFDH01000056.1| GENE 3 1539 - 2456 281 305 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|225084369|ref|YP_002657150.1| ribosomal protein S16 [gamma proteobacterium NOR51-B] # 7 298 9 304 309 112 27 2e-23 MSALAIVQTQNLSKTYGAIHSVNKVDLHVQEGEIYGFLGPNGAGKTTTLKMLLGLIKPTE GTINIFGESLSKHRPSILQRTGSLIESPSYYGHLTGLENMKVMQRLRNVPDKNVDEALRI VRLENQKNKKAEQYSLGMKQRLGIAMALLAFPKLLILDEPTNGLDPAGIGEIRELIKLLP ERYGITILLSSHLLSEIEQIATSVGIISEGNLLYQGSMDSLRQKNRNAIFMKTGDNAKAE QLLFTQGYRPTQSGGRLELINIQDSEVAEMNKLLVEHQIAVTRIEEQKKSLEDIFLELTG KERSL >gi|333606354|gb|AFDH01000056.1| GENE 4 2899 - 3333 58 144 aa, chain + ## HITS:1 COG:CAC0289 KEGG:ns NR:ns ## COG: CAC0289 COG0745 # Protein_GI_number: 15893581 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Clostridium acetobutylicum # 1 138 94 233 235 126 47.0 2e-29 MLGLGLGADDYIVKPFLPRELVLRLMAILKRVYSSPVVERLSAFRLGEQIIDLDSAVVHR NHKELPLTAKEHAILVKLYENQNRIVTSDALCQAVWGDDSYGYENTLMVHIRRVREKIEL DPSKPIHLLTVRGLGYKLLVKEIR >gi|333606354|gb|AFDH01000056.1| GENE 5 3483 - 4751 185 422 aa, chain + ## HITS:1 COG:CAC0290 KEGG:ns NR:ns ## COG: CAC0290 COG0642 # Protein_GI_number: 15893582 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Clostridium acetobutylicum # 1 389 55 445 467 129 23.0 1e-29 MAKSLEKQVDSFQLDEQATELLKQNHAWAMLLGEKGHVRWDYHLPHDVPKSYNLVDVAKF SRYYLMDYPVYTSEHKDGLMVVGYPKESHWKYQLDFLPDWISSLPLRIVLLLLCNLALAL LISVVIGTRLISKIRPLVDGVHNLAREQESVQLDAKGIFGDLAQSINSASAILQSKTAAL QARDEARSNWIAGISHDIRTPLSLVLGYASEMEDHSDLPKEQRHQAGIIRRQGEKLRSLV SDLNLVSMLEYEMQPLYLKPLRLSVLARQVVTEFLNNGLDDRYVIELKLTDEAVQIHGDE KLLLRAISNLVQNSVLHNSQGCKIIIEAFLSNDRSHYLFIVRDSGRGILQEQLAEITELH YSTRRKRPDQQGHGLGLPMVARIAKAHHGRLILTSGVDQRGLRAVLEFPVQSPNEKVDNE EI >gi|333606354|gb|AFDH01000056.1| GENE 6 5196 - 5768 -235 190 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MWSYRPNRSHRKWDWDTTRRTPPSHWSHGCRRRGLSSTPDGLDVCLECETLNRPQLDIGN FPLDATRRLVRPTHPVAGLDYGRVRLRAPRLSTACGSQLTPAPMTVTSRPASDWIAVSLG VKSRIHKHLNLESITTSNIPQDVAFSTFNSHRSLCVLRKILNYGKRYMFLSQYGKRYKFL SLTCAKNLYR >gi|333606354|gb|AFDH01000056.1| GENE 7 5832 - 6197 112 121 aa, chain + ## HITS:1 COG:CAC3194 KEGG:ns NR:ns ## COG: CAC3194 COG0771 # Protein_GI_number: 15896442 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramoylalanine-D-glutamate ligase # Organism: Clostridium acetobutylicum # 2 80 159 237 462 82 45.0 2e-16 MAHVGEMSPLDTCVVELSSFQLMDMTSSPHVAVITNISPNHLDWHRDMDEYIATKRRLLN FPSDDDLAVLNGDNPVTASLRGRGRIKYFEGHTICDGVIDGLDGHEVTKLCIDQQYILKN E >gi|333606354|gb|AFDH01000056.1| GENE 8 7058 - 8530 29 490 aa, chain + ## HITS:1 COG:BH2623 KEGG:ns NR:ns ## COG: BH2623 COG0076 # Protein_GI_number: 15615186 # Func_class: E Amino acid transport and metabolism # Function: Glutamate decarboxylase and related PLP-dependent proteins # Organism: Bacillus halodurans # 66 410 73 421 508 175 31.0 2e-43 MMKHNSIFNLDTDERMDIGTYLLEQINDYMTNIRGVRVSPELSVDAIAEHSRKLSFEHPV SAREAINHILEGLRQFQVHTPHPRYFGLYNPRPNFMGIMADTITAAFNPQLAAWSHAPVA VEMENYVLKEIASRFGYSADAADGTFTTGGAEANLTAVLTALVHYFPSYAKEGLRSLPSH PVMYASAESHHSLVKAARSCGLGTDSLRIITTGSEMHIDVHALHHQIQVDRAAGYTPFLI IATGGTTGAGAIDPINEMANLAEREQLWLHVDAAYGGASVFAPELRDLLRGIDRADSITF DAHKWMSVPMGAGIYITRHKDILHRTFSITADYMPKEGADLDVIDPFTHSIQWSRRFIGL KVYLSLVTAGWEGYRSMVQHQTEMGNRLRRELTFSNWKVVNDTVLPVVCFTDSNIQSKSQ SNFASFICQEILHSGQAWISVYETNKAPVLRACITNYDTTEEDIMVLMQLLNGARAKYLE ETSERSELNL >gi|333606354|gb|AFDH01000056.1| GENE 9 9865 - 10755 298 296 aa, chain - ## HITS:1 COG:SPBC2A9.02 KEGG:ns NR:ns ## COG: SPBC2A9.02 COG0451 # Protein_GI_number: 19113003 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Schizosaccharomyces pombe # 1 294 1 295 295 317 54.0 2e-86 MRVFVIGATGFIGSAIVRELIGAGHEVVGLARSEAAAAALTGVGVSVHRGSLDDLDSLRS GTAAADGVIHAAFVHDFRDYAEANHQDSQVVKALGEALAGSDRPLVVTSVTALLTPGRLG TEMDTADPHSVARVASEETALAMVSQGVRASVVRLPASVHGDGDKGLVPTLIDVARRTGV SAYVGDGTNRWPAVHRLDAAKLYPLALESASAGTRLHAIGDEGVALRDIAALIGRRLNVP VVSKSPEEAVDHFNWLMHFVMMDNPASSALTQERFEWRPGQLTLLSDIDRQAYFGN >gi|333606354|gb|AFDH01000056.1| GENE 10 10985 - 11944 175 319 aa, chain - ## HITS:1 COG:AGc3663 KEGG:ns NR:ns ## COG: AGc3663 COG2207 # Protein_GI_number: 15889309 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 34 312 19 297 301 191 39.0 1e-48 MRIVTDSPLQVSNQSKGLLDEERSRLARMILALAPYDGAFKQHIPGLLISRFSRIDSDTV NDFNSPSLLFAVQGTKVITVGQQVYTLDKLEMLLFPVALPVTMQTTSATPSEPFLGIRLD LDSRRISELVLKVYAHGLPPLGQRSAGYAANTGLSIMKAVSRLLDCLSDPGDTEWIAPLV MDEILIRILRSPFGKQVAEMGFVDSGVQRVAKAIAWLRSNFSQQMKVTDLADLMHMSVSS FNEHFKSVTSMSPLQYQKALRLHEARRLMFSDSRNASTAARQVGYISISQFSRDYSRFFG ISPSRDIARWRQQEQVPHD >gi|333606354|gb|AFDH01000056.1| GENE 11 12163 - 12714 410 183 aa, chain - ## HITS:1 COG:lin2279 KEGG:ns NR:ns ## COG: lin2279 COG1309 # Protein_GI_number: 16801343 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 1 179 1 183 187 83 28.0 2e-16 MDRRIVRSRQMIMQAFIGLLGEQEFERVTIQGIADRANVNRGTIYLHFTDKYDLLEQSVE TYLMMLADSCVPEDGATNELSRELLIRAFTYLKEHAEIYGVLITNKGIPTFRHRMTQMIE ANITLVVNQMKLETGIHRDVLAQFLSVSITGLIEWWVVQSMPYTPEEMVEQMARVLEARL QLW >gi|333606354|gb|AFDH01000056.1| GENE 12 12878 - 13804 176 308 aa, chain + ## HITS:1 COG:CAC1471 KEGG:ns NR:ns ## COG: CAC1471 COG1893 # Protein_GI_number: 15894750 # Func_class: H Coenzyme transport and metabolism # Function: Ketopantoate reductase # Organism: Clostridium acetobutylicum # 1 300 1 306 319 191 33.0 2e-48 MNILVYGAGVQGSYLAHVLVKGGHDVTVLARGKRAEELEKEGLVIRHYLQRKTTVDRVRV IRRLDSGDAYDLIFVMMKYSDFGAVLPILAENVSRHIVLVGNNMNTYAMQDHLIKHGQSP KQVAFGFQATAGTRTDGRVICIRGSHGEMVIGGLDGPVPFRSLLEQAFMRTKYKLSYHDQ IDAWLKNHMVLVVPMNMVILFHSFQMKQVVRDDRRMRQLVAAMREGFRVLESLGYPLTPA KQASWITGYPNLIRWALKIFFLLPVSRLIDGTAVELTALNEDFAEWRARSDVPTPNWNAL ETDWLIHS >gi|333606354|gb|AFDH01000056.1| GENE 13 15459 - 15941 165 160 aa, chain + ## HITS:1 COG:no KEGG:Mbar_A1563 NR:ns ## KEGG: Mbar_A1563 # Name: not_defined # Def: hypothetical protein # Organism: M.barkeri # Pathway: not_defined # 9 160 76 224 227 136 49.0 3e-31 MHGGDEITVYPLNKNKLIVTEEIPQEYLSDFNEAVNVLFISPKASAALSRRCLQNFLHNE LQIKKNSLAQEIDQFINSQQVPSYIIEAVDAIRNIGNFAAHPLKDTNTGEIIDVEPGEAE WLLEVLEMLFDFYFVYPKKLEVRKNELNKKLQRLGKPVMK >gi|333606354|gb|AFDH01000056.1| GENE 14 16798 - 17511 334 237 aa, chain - ## HITS:1 COG:BH0914 KEGG:ns NR:ns ## COG: BH0914 COG2188 # Protein_GI_number: 15613477 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus halodurans # 1 236 1 240 248 90 28.0 2e-18 MNLSRNQRPLYLQIKNILKDRILHGVYPIKANIPSEPQLEKEFEVSKITIRNAIKELCQE GYLEKGSGKRTKVIRNTATSKLSTWKRFTELLVEEGNQVQKQLLQVEVIMTEEGTEPHQL FGAQCVRIERLYSLNNVPYTHYTHYLTTRIGEIDQWELNAQSLYEWLEEQEITLAKYRDH FAVAFASPLVEEKLRVQEKTPLLKRLRYSYDETGEVIEYSEGFYNTEMHSYIVNYNV >gi|333606354|gb|AFDH01000056.1| GENE 15 17672 - 18784 411 370 aa, chain - ## HITS:1 COG:STM4445 KEGG:ns NR:ns ## COG: STM4445 COG3964 # Protein_GI_number: 16767691 # Func_class: R General function prediction only # Function: Predicted amidohydrolase # Organism: Salmonella typhimurium LT2 # 9 346 4 342 377 300 48.0 3e-81 MYEPKQESFVLRNVKRVSGEAIDVVIEEGKITEVTTAGSGQGKQVKDCSGIYISSGWIDM HAHAFPEFQPYGDEIDEIGIKLGVTTIVDAGSCGADRIAELAASKQHAQTNLFAFLNISR VGLQRIDELSNLEWIDTSKVIQAVKEHKDFIVGLKARISKSVVGESGIEPLRIARALSDK TLLPLMVHIGSAPPSIEEIVPLLEKGDIITHYLNGKPNNLFDDQGNPLPVLADAIERGVN LDVGHGSASFSLRIAEAAKQHGIGLNTISTDIYRRNRLNGPVYNMANVLSKFLYLGYSLE EVIAAVTDHAANWLGKPELGRIQVGDVANLTLFTLRNDPITLVDSEGVKWTADRSIEAKG VVVNGVYMEC >gi|333606354|gb|AFDH01000056.1| GENE 16 19055 - 19147 156 30 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MRWDRQYLEFAMEDQKARNIIADFYMGLDK >gi|333606354|gb|AFDH01000056.1| GENE 17 19306 - 20829 961 507 aa, chain - ## HITS:1 COG:BS_mdr KEGG:ns NR:ns ## COG: BS_mdr COG0477 # Protein_GI_number: 16077376 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus subtilis # 2 405 6 410 426 372 51.0 1e-103 MAKKNKAGLIIAALLLATLMASMDNTIVATAIGTIVGDLGGFDKLMWVTSAYMVAEMAGM PIFGKLSDMYGRKRFFIFGMIVFMIGSALCGTADSIIELSIYRAVQGIGGGALVPIAFTI MFDVVAPEKRGKIGGLFGAAYGISSIFGPLIGAYITDYINWSWIFYINLPVGIVAFFMIA FFYKESVEHTKQKIDYLGAVTLVASILCLMFALELGGKEYAWNSGMITGLFAAFAVLIVA FIFIERRAQEPILTFGMFKNRLYSTSNIMAVFSGAAFITASVYIPIFIQGVFGGTATSSG LVLLPMMVGSVITAAGGGFLLSKFTYRSIMIATLALLVAGMALLTTLTTGSSRFMVTILM ILVGLGIGSSFSVLSNAAIHGFTAKQRGSASSTLSFTRELGMTLGITVFGIIQSHLFTNK LGAMFGSGGQTPENLNLSDPSKILTPETRGQIPAQILDKITEALSSSLVQTFAWAIIPAV IALMAAFFMSKEKFDPASELEEYTAPH >gi|333606354|gb|AFDH01000056.1| GENE 18 20876 - 23380 1691 834 aa, chain - ## HITS:1 COG:BH0714 KEGG:ns NR:ns ## COG: BH0714 COG0178 # Protein_GI_number: 15613277 # Func_class: L Replication, recombination and repair # Function: Excinuclease ATPase subunit # Organism: Bacillus halodurans # 1 828 1 820 820 1010 60.0 0 MKDSIVIKGARENNLKSVSLSIPKYKLVVLTGPSGSGKSTLAMDTLQRECQRQYMDSMGL TSDSIGKPKVDSIAGLSPSISVGQHVTNRNPRSTVGTVTDIYTYVRFIFSRLGERVCPSC SGSIPPSFEPSGQLVEEDEDLNPQSIYCPHCDAELEKLGMPHFSFNKPEGACEACGGLGH VANIHEAAVFNPELSLRGGGVASLNGVHRDIQIRILVAAGKHYGFEFDPDQLLKDYGDIQ RDLLYYGVESEAFKRHFPNVKPVQGTKFEGVIPGLWRRYKEKEGESGAQEKDGGFFREQL CPECHGARLKKEIRLVRVAGASISEVSDWSLGEVYTWTEGLQAVLPAEGLHLLEPILHDM PTRLKRIIDVGLGYLSMNRQTVTLSGGEAQRLRLASLLGSGLTGVLYILDEPTTGLHPRD TAGLIRVLQELRDLGNTVLVIEHDIEMMRAADHLIDIGPGAGLYGGTVVGEGSLEDLMAS ELSVTGAYLREESLPAPIRVRRKGNGQQITIREAQLRNIRIPEVSFPLGSLVSVTGVSGS GKSTLVFDILAQGGQDGPEKTGCKEITGMGHVGNIVIFDQTPMGRVQRSNVATYTDVFTH LRQLFAGLPEAKERKLTSKHFSFNTPGGRCETCQGLGVLSVDMNFLPDLEVKCHDCKGRR FTEEVLQVQYKGLSISDLLNMSVQESLPILQTETKMAGIITMLCEVGLGYLKWGQSVKTL SGGEGQRIRLAKELSKPSKNHTLYLLDEPTTGLHPTDIRQLHVLLNKLVDTGNTVVVVEH SLELIRESDWVIDIGPEGGAAGGRLVAQGTPEQVADVPASYTGLFLKRVLSEGI >gi|333606354|gb|AFDH01000056.1| GENE 19 23588 - 24082 455 164 aa, chain + ## HITS:1 COG:BS_ycgE KEGG:ns NR:ns ## COG: BS_ycgE COG1846 # Protein_GI_number: 16077377 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 6 154 4 153 155 133 48.0 2e-31 MSSDRKDQPTELQENFTLRMRGLGTRTVLYQQNVAARLGLYNNDFLSIDILHEKGPITAG ELSKLTGLATGSVTALIDRLEKNGFVRRQMDPNDRRKVIIVPLYEDKEEVSSTYLPLHDA MVNLAASYTDEELEFINRFLTKASTVLEEQIQHLSSETRGKSPS >gi|333606354|gb|AFDH01000056.1| GENE 20 24361 - 25050 527 229 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_3813 NR:ns ## KEGG: GYMC10_3813 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 6 228 4 226 227 174 44.0 2e-42 MNLQRLSGIMSIHYRNKVLWLYVPGGILLGNFLVNYLVSRLTGGVEIYTGGLASIFVCLF IGGILTAAQTFPFALGFSVRRTDYYLGTLLMFAGVSVLSALLVLLLSCMEVWTGNWGSNL HFFHLPYLSDGTILAQFIIFFSLLIYNLFTGFVIGSFQRKFGGKGTFILMAALFLVITIL AFLSTANGWWGAIFSWIAGHTAVQLAVWLFPVTLIFAAASYVLLRRASA >gi|333606354|gb|AFDH01000056.1| GENE 21 25047 - 25946 898 299 aa, chain - ## HITS:1 COG:BH3493 KEGG:ns NR:ns ## COG: BH3493 COG1131 # Protein_GI_number: 15616055 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Bacillus halodurans # 6 288 5 283 283 239 40.0 5e-63 MKEVVVEVNRLTKTFNEVTAVDGISFSIEPDKIYGLLGRNGAGKTTVMQMVTAQMFPTSG ELKVFGQHPYENYDVMKRICFIKESQKYPDNFRVADVLKVAEAVFPNWDGDYAGALIRDF RLPLKRNVKKLSRGMLSSVGVVVGLASRSPLTIFDEPYLGLDAVARSLFYDRLIEDYTRY PRTIILSTHLIDEVSRLLEHVLVIDSGKLILDAETEELRGMAYTVIGPAASVESFVQGKE VIHREPFASMLSVTVMGDSESRAKLLATDMGLEIAPVSLQQLIIYLTKTNLEEKVVNGS >gi|333606354|gb|AFDH01000056.1| GENE 22 25943 - 26314 229 123 aa, chain - ## HITS:1 COG:BH3492 KEGG:ns NR:ns ## COG: BH3492 COG1725 # Protein_GI_number: 15616054 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus halodurans # 1 119 1 119 129 141 54.0 3e-34 MSFRIDDSRPIFMQIAEKIEDDIIEQRLPEETQVPSTNQFASFYQINPATAAKGVNLLVD QGILYKKRGIGMFVAEGARQGLMEKRKTQFYEQFVVSMVQEAEKLGITSEQLIEMIRKGD RSG >gi|333606354|gb|AFDH01000056.1| GENE 23 26511 - 27227 821 238 aa, chain - ## HITS:1 COG:BS_yeeI KEGG:ns NR:ns ## COG: BS_yeeI COG0217 # Protein_GI_number: 16077752 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 1 238 1 239 240 360 82.0 1e-99 MGRKWNNIKEKKASKDASTSRIYAKFGREIYVAAKQGEPDPESNRALKVVLERAKTYMVP KAIIDRAIEKAKGGGEESYDTLRYEGFGPNGSMVIVDALTNNVNRTASEVRSAFNKNGGS MGVSGSVTYMFDPTAVFGVQGKSSEEVLELLMEADLDVRDIIEEEDTVIVYAESDQFHAV QEAFKNAGITEFTVAELTMLAQNDLELPEDAQAQFEKLIDVLEDLEDVQQVYHNVDLG >gi|333606354|gb|AFDH01000056.1| GENE 24 27448 - 28893 1353 481 aa, chain - ## HITS:1 COG:BS_ywnE KEGG:ns NR:ns ## COG: BS_ywnE COG1502 # Protein_GI_number: 16080712 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes # Organism: Bacillus subtilis # 1 481 1 482 482 542 53.0 1e-154 MDILMKLYSFVPLLNFLFALAVVFMEKRNASVTWAWVMVLIFLPGIGFILYLIFGQNMSR RKIYKLKEFNQKDIDNLIESQRRGFRESQVRYKDPVMADYQDLIYMNLTSSSAVYTQDNE VEIFTDGNDKFASLLASIKEAQSHVHLMYYIVKDDRLGRRMIEALAEKAKEGVEVRFLFD DIGSSWLPRQFYKPLLDAGGEVAIFFPSRIPYLNFRVNYRNHRKLAIIDGMTGYIGGFNI GDEYLGINERFGDWRDTHLKVTGSAVLQMQAQFFMDWNLASSHYLKAVPRYYPLIKHQGS VGIQIVSSGPDNELEQIRNGYLKMIYAAKESIFIQTPYFVPDESLLTALKMAALSGVDIR IMIPSIPDHKMVYWATKSYLGELLNLGVKGYLYEKGFLHAKTIVIDGKVASVGTANLDMR SFKLNFEVNAFLFDTRTATRQRLIFEEDMLHCSQFTPDMYKARSLMDRIKESVARLVSPI L >gi|333606354|gb|AFDH01000056.1| GENE 25 29108 - 29293 236 61 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MRTEDQVQRKLTELNKQKQSVQERLNSDPENDFLKAQLEKLDDMTLMLEWVLNAPTGSYH S >gi|333606354|gb|AFDH01000056.1| GENE 26 29457 - 30029 211 190 aa, chain + ## HITS:1 COG:no KEGG:BBR47_49270 NR:ns ## KEGG: BBR47_49270 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 1 181 1 181 184 283 71.0 2e-75 MSKPVMNVALVCGPDCDMEVQAIRSTLEYFGARVFTYWIGRPNDLIDLISGKDLYPNTDL IILCFHGDEGQFIMPELGESIYEPGEPKGNFGPEEIRRFAKLAGKTVIGTGCSVGKPETA RAFLDSGCEVYIGPNDYPDGNDALMFVLRLFYDLIQNKRSVKEAFQNAKSLDAEMDMYQL YENGQQSSRK >gi|333606354|gb|AFDH01000056.1| GENE 27 30183 - 30740 456 185 aa, chain - ## HITS:1 COG:no KEGG:BCB4264_A2341 NR:ns ## KEGG: BCB4264_A2341 # Name: not_defined # Def: hypothetical protein # Organism: B.cereus_B4264 # Pathway: not_defined # 10 171 14 175 180 75 25.0 9e-13 MEKEWSMWGNERYLFDLLMHSEGSSIKMLEIILQEQLSEEVVEQVLIPSKSLHKKPRAVF GQTSPLLRRVSSYRYREETILHKAIYAHLEALPEGALDGMNHEDLHLEKLIDSLETKREI LYAGYENNRSADVCFHPVKLKADLFPVKEYQLTCSGSVCFLVHELFDAELILRHSRRKLR KEIFM >gi|333606354|gb|AFDH01000056.1| GENE 28 30935 - 32236 1085 433 aa, chain - ## HITS:1 COG:no KEGG:trd_1313 NR:ns ## KEGG: trd_1313 # Name: not_defined # Def: Stk1 # Organism: T.roseum # Pathway: not_defined # 5 433 6 458 604 65 24.0 5e-09 MEQRIGERYVLTEPIHPLADGVMYAGKDLSLHRDVFLLMVEKSGDASSSDYLRVLGQAAQ FSDERFFHILNAGLAENHVYTVLTAQKGTPLSAQLGRHRMRGKEIVSAVFDLGKGMQEAM EEGISGFSVTAENMWLTEDNRLKVMNYWSPGKLVSRGSLGLCTLLYQISTHSKQGPATFD QYQENVVPSLTGLTSGQKEALLALSRRVFREEVSLSSFIFSLREIIALEKSPEAPPKAFI PPAAPPAEPVRETAPPRIQYRQEEEPAPERVRRTEKPPRAKEPEAEEADTREKMPLRRTI WTLGTVAVVLLGIAVFMYMLLPGGPSKGPGSGGTAGNTATATPAPTPTTTVNTSTPEPTP TPTPATEAVPGQIPNLIGMTQEAAEQAVKAAGMRYSYFIEPNPAESGTVFRQEPAPNQPA NKGDRVTFYISKG >gi|333606354|gb|AFDH01000056.1| GENE 29 32495 - 32974 571 159 aa, chain + ## HITS:1 COG:BS_ydbS KEGG:ns NR:ns ## COG: BS_ydbS COG3402 # Protein_GI_number: 16077526 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 44 158 41 158 159 97 42.0 1e-20 MNRPLTRRLDRRFVTVSQISSLLTNSILLLASFAYLMAAQSRDWFMLPGWIAAAASAVSL VLFTFVIPQARYRLYAFEVTEEELEIRSGWIWITNILVPMVRVQHVELERGPLQRYYGLA ELKIVTAATTHRIRGLSEDDAEALKHRLGVLARAVDEDE >gi|333606354|gb|AFDH01000056.1| GENE 30 32967 - 34493 1167 508 aa, chain + ## HITS:1 COG:BS_ydbT KEGG:ns NR:ns ## COG: BS_ydbT COG3428 # Protein_GI_number: 16077527 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Bacillus subtilis # 1 498 2 487 493 174 25.0 4e-43 MNEPRKLHKSYIFFPVLKTLQTLVPVFVLIAIREGEWRWMPFLILLGVCALFAGFGAVGW STFHYRLEEDRLIIQKGLIFREEKIMYYPRIHSMNTEQPFVQRLLGVVQLKFEMPGGKKE SDGVLPAVSAQEAARIIREINAFLSSSGYSPVTAESGEGNGSMEKAIEPDAVPAETKGRP PQTASAEETGVYAYRATAGTLILAAFSTLNIGLIAAFVAGVLSLADDVLPGNLYARLWNA RNELHGGWLIYVLLGLGGLAAAWLLAGLLYLLKYAGFTVRAEAGTLTVSYGLLEKKKHTF QEARVQAVLIKEGLVRQLIGRAQIELRVVSSSKEEKIMLMPLVSAKRIPQLLPQLLPRFS LPAIENRPPARALLYYSRTDVAVVAVLAAAAVYFWGPAALWGLLLLLLDFLWSYSRFRSS GMTLQGSQLTVRGRMIARSTWLVRRPQVLSLRMKGTRSQRRKHLLSLSVSVMGDTSSTAC EVSFIEERDAQRVWSWFSRSADHTHGKD >gi|333606354|gb|AFDH01000056.1| GENE 31 34903 - 35319 376 138 aa, chain + ## HITS:1 COG:SMc00040 KEGG:ns NR:ns ## COG: SMc00040 COG1764 # Protein_GI_number: 15964715 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted redox protein, regulator of disulfide bond formation # Organism: Sinorhizobium meliloti # 1 135 1 137 140 135 51.0 2e-32 MKTMYTTSATAQGGRKGRVATPDGKLDLQLSMPKEMGGDGGEGTNPEQLFASGYSACFLS AVELVAKKKGISTENAKLTADVSIGKNEDGSLQLSAKLQLSVPGADKSQVEELLEEAHQV CPYSRATRGNIEVELQAV >gi|333606354|gb|AFDH01000056.1| GENE 32 35426 - 36589 1340 387 aa, chain + ## HITS:1 COG:BS_yugJ KEGG:ns NR:ns ## COG: BS_yugJ COG1979 # Protein_GI_number: 16080189 # Func_class: C Energy production and conversion # Function: Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family # Organism: Bacillus subtilis # 1 387 1 387 387 612 72.0 1e-175 MKNFTFHNPTKLIFGKGQLEQLPKELTAYGKRVLLVYGGGSIKRSGLYDQVVSLLQGAGA EIFELAGVEPNPRVSTVKRGADLCKKENIEVILAVGGGSVIDCTKAIAAGAKYDGDVWDF MTRKASPADALPFGTVLTLAATGSEMNAGSVITNWETQEKYGWGSPLVFPKFSILDPAFT ATVPKDQTVYGMVDIMSHVFEQYFHHTPNTLVQDGFCETILKSVIETAPKLVEDLENYEY RETILYSGTMALNGLLAMGVQGDWATHNIEHAVSAVYDIPHGGGLAILFPNWMTHVLDEN VGRFKQFAVRVFGIPAEGKSDRDVALEGIEALRSFWNSIGAPSRLADYDIDDSKLDVMVD RAMVYGPFGYFKRLDREDVTAIYKASL >gi|333606354|gb|AFDH01000056.1| GENE 33 36937 - 37449 580 170 aa, chain - ## HITS:1 COG:CC2489 KEGG:ns NR:ns ## COG: CC2489 COG3663 # Protein_GI_number: 16126728 # Func_class: L Replication, recombination and repair # Function: G:T/U mismatch-specific DNA glycosylase # Organism: Caulobacter vibrioides # 5 147 7 144 191 119 46.0 2e-27 MLCMGFEPVIAPDSVVLILGSMPGELSLERQEYYGNPRNDFWRLLASLHGEDRVPDTYEE RLRFAVNRKIALWDVLASCEREGSLDANIREPAVNDFDALFAEYPNLRTVMFNGAASEKL FRKHAGHLLADSRLRFVRLPSSSPANAMGWERKFAAWREAWQGMPGRRDE >gi|333606354|gb|AFDH01000056.1| GENE 34 37468 - 38148 722 226 aa, chain - ## HITS:1 COG:BS_yetF KEGG:ns NR:ns ## COG: BS_yetF COG2323 # Protein_GI_number: 16077781 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Bacillus subtilis # 2 220 3 221 231 196 44.0 2e-50 MDFMYIGIKLITGFIGLWGMTRLLGKKEISQLTPFDFVSALMLSELVGNTVYDKEVKYLE LLFALAFWTVLSLTFEKITQKYKKLRRAFEGSPAVVIEKGKLNVKAMRSNSLDLEQLLML LREQGIFSLHEVAYGIFENNGSLSILKKSPYDTVVRGDLNLPEEPVELPVPLIEEGEIKF KELNRIGRDEEWLKERMKESGFKQIKDIFYAEWHREHGFYASGWGK >gi|333606354|gb|AFDH01000056.1| GENE 35 38467 - 39549 970 360 aa, chain + ## HITS:1 COG:SP1159 KEGG:ns NR:ns ## COG: SP1159 COG0582 # Protein_GI_number: 15901024 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Streptococcus pneumoniae TIGR4 # 10 355 8 354 356 176 36.0 7e-44 MNIQKQKDREELDKKIPFMPWYVDKFIHHKLPDLSPSTLLEYVRDYETFFSWLLAEGLST AERMADIPLEDLEKLHMESVDHYRAYLATKKDQANTKITINRKISSLRSLFHYLSQIAED ENYYPLLKRNVMAKIEIKRTNKAKDLAGKLEGKLLQENEIFEFIDYIRSGYEHDIANNKQ ALYAYELNKIRDACIVSLILHSGLRVSEVVNLTLDDLDMKKRTVYVYRKGNNDGSFKTRV FFRQEAVDDLTCYLQLRETRYHPPKKEKALFLTIPNGKKEGQLMSKRAIQEMVIKYAKRF GKPFLSVHKLRHSFATDYYLQNDLYKTQEQLGHASSDTTQIYAHLTDKTMEEAIDKRKEG >gi|333606354|gb|AFDH01000056.1| GENE 36 39779 - 40333 278 184 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|90578021|ref|ZP_01233832.1| ribosomal protein alanine acetyltransferase [Vibrio angustum S14] # 13 178 1 166 168 111 33 3e-23 MPITTDLIYFRYLTQEDAPALLSLMQRNRAHFEPFTITRPDSFYTLDEQSARIRKWTEDR AADKSYNFGIFFKENDELIGEMSLFHAAREPAHKCMMGYCLDHAYQGKGIMSHAARLALD FAFDEAGFHRVEAGVMPHNIGSIRVLEKAGFQREGVARKNVKINGVWQDHVMFAILEEDE RPRS >gi|333606354|gb|AFDH01000056.1| GENE 37 40460 - 41278 496 272 aa, chain - ## HITS:1 COG:no KEGG:PTH_2570 NR:ns ## KEGG: PTH_2570 # Name: not_defined # Def: hypothetical protein # Organism: P.thermopropionicum # Pathway: not_defined # 1 229 343 580 856 188 42.0 2e-46 MKIDLGCGLRKHPGFIGIDKAPLPGVDLQCDLNDGIPLETGTVDFVMASRSLEYVPDLMN VMKEIYRVCRHKAVICLLAPYAHTSYHAVNPQFRSWFDEQLPRFFTNELYVYDPLRENSY MTDVPAGWDKGAVTEIDLKLLRCEFFYLPQYLSPIYDEEDRRMLRQSTLNVVDEILYYFV AVKEPISRQELEELAQGTYEEPLLLAERRREEAAREESRLPPENTFRHEPGSVLPQRDPL PVPPKRRKGSKKPVKKKPAARKPVKGLRKRKQ >gi|333606354|gb|AFDH01000056.1| GENE 38 41346 - 42071 498 241 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNRSRYWWFGTLGAVLILGSLTGYIAIAREPLWIQEKEIQKGDKLGPLQLGKTWKVTAGS SAALSVISPHESLDLTFPKLSGLLKINQEDTEHIVGTVAADMTSLYSEDPAWNAKLRDWY FFNVKAYPEASFRIVKVGGFEKPLLEGEPHPLTIEGELTVRNMTQPIQFKGEIKHIGGRM ELKARCSGLETKNFGIPELLEPIYTGKNTATLEVTLILEPEDPDTSRHRQADSHNFREIG A >gi|333606354|gb|AFDH01000056.1| GENE 39 42357 - 43037 696 226 aa, chain + ## HITS:1 COG:lin2728 KEGG:ns NR:ns ## COG: lin2728 COG0745 # Protein_GI_number: 16801789 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Listeria innocua # 4 222 3 222 225 235 54.0 6e-62 MKTHLLIADDDAHIRELLQFIFKKENYLVSEAADGEEAAALLEREQIHLAVIDVMMPGKN GLELCEEIRSYYDIPVILLTAKGELEDKEKGYLSGTDDYLVKPFEPKELLFRVKALLRRY QLVSSDVIALNRTVIDRKSYEIHMDGETYVIPLKEFELLAQLASQPGRIFTREQLLKLVW GADYEGGSRTIDVHIKRLRERFHEKTSDFVLTTVRGLGYKLEVCST >gi|333606354|gb|AFDH01000056.1| GENE 40 43034 - 44413 1149 459 aa, chain + ## HITS:1 COG:lin2727 KEGG:ns NR:ns ## COG: lin2727 COG0642 # Protein_GI_number: 16801788 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 1 458 1 458 459 427 45.0 1e-119 MKTLYVRIVITFLLIAVVSSAAALLFSNGYYSAKLRDYNEQKILKISQEIRGLYEEIPGL GLGEYLTRIANMGFQVYAVDDELRGTFYGSPFKHKEIERDTIVRVLNGDTYHGVMEERHL LLVTGFFENSIRNSIGLPVRSGGKTMALFIRPDMEQQIGEVRILMALLLGFTFLLSLVLI IVSTRFIVKPVQKLTEATNKIVGGDYNIHMDVTRRDEIGNLARHFTQMAQSLEKLDQMRQ EFVANVSHEIQSPLTTIQGFAQSILEKGATPEEERRYLRIIEEESRRLSSLSKELLTLAA LDKETSALKPSSFRLDEQIRQIFITTEWQWTEKELQLQLDLPELVIRADSQLLHQVWLNL IANSIKFTRPGDTISVQIRQEQHEILVSIGDTGPGIPPEDLPHIFDRFYKGDKSRNRSRS GSGLGLSIAHKIVTLHKGSIEAKSLPGEGTVFQIRLPQL >gi|333606354|gb|AFDH01000056.1| GENE 41 44489 - 46723 1855 744 aa, chain + ## HITS:1 COG:lin2557 KEGG:ns NR:ns ## COG: lin2557 COG2409 # Protein_GI_number: 16801619 # Func_class: R General function prediction only # Function: Predicted drug exporters of the RND superfamily # Organism: Listeria innocua # 53 725 77 731 744 390 35.0 1e-108 MNNPWNKLARAVSSPRGAKIVAALWIIAIIALSLAAPGSKQVAVSSGEGSAFSQSPSEEA QKMMDERFPSEDGLTALLVFHGKNSITAEERSKIAAISEWLASDGKPPQIAGALPFHTLP KAVQDKMFSDDGTTILLNAAFHKDLESGQIYEGLQQIRTHVEQTGIGSLEFKITGPAGIA ADTTSLFKNADFVLMFATVGLILVILMIIYRSPLLAVIPLVISGMVYMVVDRILGLAGKY GWFLVDKQALSIMMILLFAVLTDYCLFVLTRYREELQTSADKYEAMQHALSRVAEPILFS GGTVLIAMLTLFTAVFKPYHHFAPVFSAAMAVIMLGGLTLIPAVFALLGRKAFWPFVPKL SKSSAGKARGFWASMGGFVTRKPGLTAGVLLLALLASSLSVTSMKYSFNLLKSFPDSTSS RQGFEILETKFPPGQLAPVSVLLTSEKRLPLDAAFYEKVAALTGLLKNQPGVNAVSPEIT PAISASGAQLPKKVLSADGTAMKLQLTLESNPYEPVSLDLIGLLRGSSPALLEKSGLNPS EFTLHYAGQTAVQLDVRNMNKRDTILLFSLITIFITIMLLIQTQSFKHALTMIATMLLSY TATLGLGWMIFHFVLGYDSISYRLPVYTFVFLIALGVDYNIMLVSRIKEEAARYPWKEAV SRGVALTGGVISSAGLILAATFTVLITQPLQELFLFGLTMALGILLDTFLVRGMLLPALL VFAGERKNSAMKRETLKDHTAPRQ >gi|333606354|gb|AFDH01000056.1| GENE 42 46750 - 47190 447 146 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFGWMLFLHITGLLGWLGALLGILVTMLLLRKQLGTPDANSLAGKTIRVFGRIAHPSSIL VLLSGVYLILQMGLGSGKPFWLQVMEKGGGTIILLAVIFTAVLGSKMNKRLNSAGGTSVR LTGYLSMVGVFMFLIVSVVLVVSLKL >gi|333606354|gb|AFDH01000056.1| GENE 43 47249 - 48463 1304 404 aa, chain - ## HITS:1 COG:BH1775 KEGG:ns NR:ns ## COG: BH1775 COG0477 # Protein_GI_number: 15614338 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus halodurans # 7 395 5 392 409 322 43.0 1e-87 MSTMKNRRSPLVILMINMFIAMLGIGLIIPVLPEFLKEFGLGGKTAGYLVAAFGLTQFIF SPIGGEWSDKYGRRIMIVSGLALFTVSNLLFAMASEVWMLYASRLIGGIGAAAMIPSMMA YIADITTDEKRGKGMGMLGAAMSLGFVIGPGIGGFLAELGLRAPFYVSSAVGALAMIGSL LVLPESLSKEELAANRSSQVKKESIFIQLGQSFKAPYFILLLLVFALTFGLANFEAVFPL FVDNKYGYTAKDISILITVGALIGAVIQAMLIDKLIRRFGEKKLINLTFILSALCLILML LSGNFWYILVITMLFFTLTSIMRPAINTLLSKMAGDEQGFVAGMNNAYMSLGNIFGPAIA GILFDVQINLPYMFGAVILVISFIISTSWSSKNKRKLVPAGGSN >gi|333606354|gb|AFDH01000056.1| GENE 44 48668 - 49273 421 201 aa, chain + ## HITS:1 COG:BH0987 KEGG:ns NR:ns ## COG: BH0987 COG1309 # Protein_GI_number: 15613550 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus halodurans # 1 174 1 173 203 73 27.0 3e-13 MPRNPERDQEIRKERCDQILSAAVELFAKNGLSSTKISDIAHKAHMSHGLIYNYFQSKEE IYISIVEKNLCILTALFEQAHRLPDASSYEKLTWLLDQVYSERWDDAVFYQVVADQILTS DSVSDQLKTSVRTSIGDNLKLLTRIFREGQEKGEFIQGDPRELAFYFMNMIQAVLLAETR GIYFTGTPLHRNLLQLFLPKA >gi|333606354|gb|AFDH01000056.1| GENE 45 49410 - 50279 585 289 aa, chain + ## HITS:1 COG:BS_ydeE_2 KEGG:ns NR:ns ## COG: BS_ydeE_2 COG3708 # Protein_GI_number: 16077584 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 128 289 1 163 163 253 71.0 4e-67 MNGLEKMNSALAYIEANLADDIDFKEVARLAVCSEYHFKRMFSTLAGVTLSEYIRRRRLT LAAFELANTDLRLLDVAVKYGYSSSDSFARAFLSLHGINPSEARTRGQSLKAYPRMTFQL TIQGGSEMNYRLVEKDAFRIVGLKKRVPLIYNGVNPEIAAMWGNLNMETITLLKSLSNVE PSGLISASVNFSEGRLESGELDHYIGAATTKDCPDHLTQLEVKASTWAVFEAVGPFPETL QNVWGRIYSEWFPSSGYESTEGPELLWNESKDTSSPTYRSEIWVPVVKQ >gi|333606354|gb|AFDH01000056.1| GENE 46 50465 - 51376 585 303 aa, chain - ## HITS:1 COG:CC2611 KEGG:ns NR:ns ## COG: CC2611 COG2421 # Protein_GI_number: 16126848 # Func_class: C Energy production and conversion # Function: Predicted acetamidase/formamidase # Organism: Caulobacter vibrioides # 16 300 4 303 304 132 33.0 7e-31 MAVHHFQPKHYHNTIGAHEPVLKIADGDSVVTSTVDARGWDYRGESVAGRGNPMTGPFYV EGAQPGDTLAVRLESMVPSRDWGWTFNVLAPNVVDPIAAAALPPFDIVRWSVDAEQALVV LEKPTSGLAGLKLEARPFLGCFGVAPPKDQAISTATSGEYGGNMDYKGLIAGVTVYFPVF AEGALFHLGDGHAAQGCGEIVGTGVEISLDVRFTVQVLKGKTIGWPRGESDTHWFCIGNA RPLDQALQHATTEMLAMLTKDYGLTVSEASLLMGQAVEYEVANVFNSAYSVVCKVPKAVL SML >gi|333606354|gb|AFDH01000056.1| GENE 47 51390 - 51560 81 56 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVFLHESLTQSRSSQMSITIMFAINDCMLLAVALILKTPKLSMLSSKVKAKENSSI >gi|333606354|gb|AFDH01000056.1| GENE 48 51821 - 53506 2016 561 aa, chain - ## HITS:1 COG:BS_ilvD KEGG:ns NR:ns ## COG: BS_ilvD COG0129 # Protein_GI_number: 16079246 # Func_class: E Amino acid transport and metabolism; G Carbohydrate transport and metabolism # Function: Dihydroxyacid dehydratase/phosphogluconate dehydratase # Organism: Bacillus subtilis # 6 561 4 558 558 886 78.0 0 MAKQGMRSDMIKKGFDRAPHRSLLRAAGVKEEDFGKPFIAVCNSYIDIVPGHVHLQEFGK IVKEAIREAGGVPFEFNTIGVDDGIAMGHIGMRYSLPSREIIADSLETVVSAHWFDGMVC IPNCDKITPGMMMGALRVNIPTVFVSGGPMKAGKDSNGRSISLTSVFEGVGAYQVGKIDD KALLELEQYGCPTCGSCSGMFTANSMNCLCEALGLAMPGNGTILAVSPERREFVKQSATQ LMELIKLDLKPRDIVTKEAIDNAFALDMAMGGSTNTVLHTLALAHEAGFEYPIERINEVA NRVPHLSKVAPASDWHIEDIHEAGGVSAVINELLKKPGAIHGDCITVTGKTLAENVAGAE ILNQDVIHTLDNPHSERGGLAVLFGNLAPNGSIIKVGAVDPSVGGRHVGPAICFDSQDDA LYGIANGKVKEGHVVVIRYEGPKGGPGMPEMLAPTSQIVGMGLGAKVGLITDGRFSGASR GISIGHISPEAAEGGPIAFVQDGDIIELDLIERKIELKVSDEEMEERRKGWKEFEPKVKT GYLARYSKLVTNASTGGVMKI >gi|333606354|gb|AFDH01000056.1| GENE 49 53621 - 54352 295 243 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 225 1 218 245 118 32 4e-25 MLTIRNLTKKLTTGQEILSKISLQIDEGELIGLVGASGSGKTTLLKCIALQEKWDDGQFI YNDRDITSLGIAEKFKLKRDWAFIEESPALDRKQTAVKNVLKGRFYEKSVMRVLTGTNAR DEHVLAMDYLEKVGLLDKAEKKVEDLSGGERQRVSIARALVQGAKIVIADEPVSGLDPEA ANSVLKDLRELCKREKVTVVCSLHNVEFAERYASRIWGLAGGKIVLDIAGRKLSSMERAK IFD >gi|333606354|gb|AFDH01000056.1| GENE 50 54607 - 57027 2594 806 aa, chain - ## HITS:1 COG:VCA0027_1 KEGG:ns NR:ns ## COG: VCA0027_1 COG3325 # Protein_GI_number: 15600798 # Func_class: G Carbohydrate transport and metabolism # Function: Chitinase # Organism: Vibrio cholerae # 302 769 132 588 594 211 32.0 6e-54 MHATQAYGKKLLPLLLLVTLLLSLLPLYPSTSSGAAAQWAPNTAYKAKDLVSYNGVTYEC LQPHTSLNGWEPPNVASLWKKSEDPTPSPSPSPSPNPSPSPNPSPSPNPSPNPSPSPSPS PGTGAPAWQAGTAYKVGDLVTYNGKTYKALAAHTALVGWEPATTPTLWKLDTTDPTKPEP TTPFCAPDWSASKIYAKGKIVGYKGKAYRAISDVHGIAPDDTIYNMWEVAGKISNDLCPV SIPNNIDYGTANPGTGNTNAGKINPTGAIGAGHPVSGTGTGGTKGGIDPATDPGGNHPGF DADTGGRVAKLPSGTLPLQHNTYEMSAGQEVVEYLGDWAIYGRRFDFSKLPVKNVNRLVY GFAGVCFPAAQNTQDPGFPTTAPASVNRTCKQSNLPDGAMAIADFEAAFLRTLPGQTGGK ITGTESMYDLDPNDVAGVFGALYQLRKTNPNLKLDLSVGGWTLSEGFPWMASDTTRRKAF VDSVVRFLEQFGFDGVDIDWEYPASDGAVIGMARKDDPENYIKLLKELRAGLDWLTKKTG KEYRLSSAIPATEEKLAKIDWAEASKYLNRLYAMTYDLSGAWERELGHHTPLYPNPNSKD PATGKHVDLSLDTTVKLLKGYGVPANKIMIGIANYHRSKAMKNGDITEYTNGLIGKSTFG DLAWKGKSLILGIAGVGSWEAGVVEGYDLYQNYLDKDLKPKNGYKLYTDKAANADYLVNP IGSFITVETPRTVALKTQYAKDNGLAGIFGWQLEQDNGYNLNALNHILGNKLVSDVSDGK PKDQIAVCGQNVTAAECDQLNASLKK >gi|333606354|gb|AFDH01000056.1| GENE 51 57331 - 57933 647 200 aa, chain - ## HITS:1 COG:BS_yobS KEGG:ns NR:ns ## COG: BS_yobS COG1309 # Protein_GI_number: 16078967 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus subtilis # 1 184 1 183 191 134 43.0 1e-31 MSPRIGLDEQTLLRAAAELADEQGFEAVTLASLAQKLHVRSPSLYNHIEGLGALRAKLAL YSLSILHGDLAAAVEGLAGDEAVFALGEAYAAFARRHPGLYEATLRAPDRKESELERISA EIVRLIVGVLGYYGLEGDSAIHATRGLRSILHGFSSIERSGGFGIALSVEVSQKLLISAF LAGIHVMKQEETGRPNPAAK >gi|333606354|gb|AFDH01000056.1| GENE 52 57935 - 58669 701 244 aa, chain - ## HITS:1 COG:BS_yobT KEGG:ns NR:ns ## COG: BS_yobT COG0491 # Protein_GI_number: 16078968 # Func_class: R General function prediction only # Function: Zn-dependent hydrolases, including glyoxylases # Organism: Bacillus subtilis # 1 232 1 232 233 272 56.0 5e-73 MKITREGDLYQLAFLPRMFPVNCYLVEEKDGLTLIDAAMPFSAKGIMKAAGGIGKPIKRI VLTHAHEDHVGALDELKRLLPQAEVFISARDARLLKGDATLDPDEPQMPVRGAVPKKVTT VPDVLLKEGDRIGSLLALFTPGHTPGSMSFLDVRSNAVIAGDALQLRAGIAVSGQLKLLF PFPALATWNKHEALESVKKLRGYSPALLAVGHGAMLSDPAAKLDLAIAAAERNLAVSLNG RSSH >gi|333606354|gb|AFDH01000056.1| GENE 53 58847 - 60976 1821 709 aa, chain - ## HITS:1 COG:BS_katB KEGG:ns NR:ns ## COG: BS_katB COG0753 # Protein_GI_number: 16080956 # Func_class: P Inorganic ion transport and metabolism # Function: Catalase # Organism: Bacillus subtilis # 4 704 3 686 686 1006 69.0 0 MKKDDQRKPVNEQSKDKQLEPYRVDDTGQKLTTNQGLRVSEDEHSLKAGVRGPTLMEDFH FREKMTHFDHERIPERIVHARGFGAHGYFQVYEPMTEYTKAKFLQDPSVKTPVFVRFSTV AGSRGSSDTVRDVRGFATKFYTEEGNYDLVGNNMPVFFIQDAMKFPDFIHAVKPEPHNEI PQAQSAHDTFWDFVTSNTETAHMVMWAMSDRSLPRSFRMMEGFGVHTFRFVNEQGKGHFV KFHWKPLLGVHSLVWDEVQKLAGKDPDFNRRDLWDAIETGNYPEFEFGVQIIKEEDEFMF DFDILDPTKIWPEEQVPVKIIGKMTLNRNTDNFFAETEQIAFHPGHVVPGIDFTNDPLLQ GRLFSYTDTQLSRLGGPNFHEIPINRSVAPVHNNQRDGMHRMTINRGPVSYHKNSLAGNS PEPASEKEGGYAHYAEKVEGRKIQARSDSFKDHFSQATLFWNSMSDVEKQHIVNAFRFEL GKVKTKEIRQRAVDMFGQVSVDLAKQIAAGIGAKAPEDTSDTGVTLSSPALSQMNTVKTP LTRKVAVLAGNGFRGKEVSGMLQSLKAAGLVPEVVSVQLGTIVCDGGNPLEVDHSLLTAD SVLFDAVYIPGGRQSADELLADSKTADFIKEAFQHYKTIGAVGEGAELLAAAGIAGSAAG SPPATATPEIQPGVLAADRADEAAGFSRDFAAAVAQHRHWNRSLQSQAK >gi|333606354|gb|AFDH01000056.1| GENE 54 61176 - 61283 158 35 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGYGGGVGGFGLGTSTAAILVLFILLVIISRTFLY >gi|333606354|gb|AFDH01000056.1| GENE 55 61531 - 62364 670 277 aa, chain + ## HITS:1 COG:Cgl2502 KEGG:ns NR:ns ## COG: Cgl2502 COG1082 # Protein_GI_number: 19553752 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar phosphate isomerases/epimerases # Organism: Corynebacterium glutamicum # 57 261 1 201 226 69 30.0 8e-12 MKLSLSMWSMHRTTRENQGTVLDFLTFCQQEGIGQVELLDVFWKDKEAEIPAVLAFLEKN GITLSSYAVGNDFVKGTPGERAEALRVVKDGIETADRLGTSVVRVFSGNMSDAYTFDSAL EWIVSGLGEAAALAEQAGITLCLENHGKLAGKGDQVLEILKRVGSPALKSTFDTGNFLLV DEKPLHALDVLLPHIGHVHIKDFAETPEGRYKALSGKTYEGVFAGEGDVRLDVIVSRLKE AGYNGAYVLEYEGTGDEAEGIRKSYENFNHLVQTKGD >gi|333606354|gb|AFDH01000056.1| GENE 56 62370 - 63944 1502 524 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_1669 NR:ns ## KEGG: GYMC10_1669 # Name: not_defined # Def: FAD dependent oxidoreductase # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 7 524 7 524 524 797 74.0 0 MTPIQLADVVIIGGGTGGFAAALASAESGKSVILTEETVWIGGQLTSQAVPPDEHPWIEK FGCTRTYRRFREDVRNYYRDYFPMKPEAKAITELNPGSGSVSRLCHEPRTALAVLQQMLA PYVHSGQVTILLRHIPVNAETDGDAITSVEVKSLDSGALTILKAPYFLDATECGDLLPLA KAEYVTGAESYAETGEPNAVVGDPLPGDMQGFTYCFAVDHLEGEHHVIEKPEMYDFWKAY KADFWPDRLLSLVGVKPATNEPVRYEIFPGTEHFSLFRYRQIADMEHFREGTYRSSISLV NWPQNDYWLGSIIDVPEEEKQKHLYQAKQLSLSFLYWLQTEAPRPDGGIGYPGLRLRKDV VGTEDGLAMYPYIRESRRIKAEFTVLEQHVATACRPDGRAEAFADSVGIGCYRIDLHPST ENRPYIDVSSLPFQIPLGSLIPVRVRNLLAAGKNIGVTHITNGCYRLHPVEWNIGEAAGY CAAYCIDNGMTPSELRGNPDELAKFQSHLAKAGIELEWPALRPV >gi|333606354|gb|AFDH01000056.1| GENE 57 64153 - 64410 223 85 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MAGSLSDDLFIGSIISLLIWGCTSGIFTRFNLTHTEDRYIQPPDAEEYFSPKPDKKPLLH AFRSFYFITAVLGFAASVVVSYFEF >gi|333606354|gb|AFDH01000056.1| GENE 58 64584 - 65771 1163 395 aa, chain + ## HITS:1 COG:BH1812 KEGG:ns NR:ns ## COG: BH1812 COG4552 # Protein_GI_number: 15614375 # Func_class: R General function prediction only # Function: Predicted acetyltransferase involved in intracellular survival and related acetyltransferases # Organism: Bacillus halodurans # 39 395 33 386 386 192 32.0 1e-48 MKSVEPQHGEQFNHLLRYVFQVTNHDLQTFGWEDREIAQAKLPVLKQADVLGWFDEDKLI SQLAVYPFQVNIFGRIYDMGGLTGVGTYPEYANMGLMNQLMRQALTNMRGRRQSISYLYP YSIPYYRRKGWEIISDKISFEVKDTQLPKLKTVPGNVERVTIEHPDIQTVYQRFALQNHA AMLRNNLAWEEYLRWDLDDMTVAIYYDADHEPSGFLLYWIAGEIFHMKEMVFLDEEARTG LWNFISAHFSMVTYVKGHTYKDEPMSFLLEDGDIKETIAPYFMARIVDVSQFIEQYPFQA QGEECKLTFNLHDPMLEWNQGTFTLTVDKEGQGRLADGGGTPSASFDIQTLTTMLMSYKR PSYLQRIRRFHADRESVQLLEKLITNEQPYFSDYF >gi|333606354|gb|AFDH01000056.1| GENE 59 65860 - 67407 1487 515 aa, chain - ## HITS:1 COG:BH3871_1 KEGG:ns NR:ns ## COG: BH3871_1 COG0665 # Protein_GI_number: 15616433 # Func_class: E Amino acid transport and metabolism # Function: Glycine/D-amino acid oxidases (deaminating) # Organism: Bacillus halodurans # 13 379 8 373 373 372 48.0 1e-103 MNETNSRSAAAFPQFPESYWLASAQIPSYSRLNENIRVDAAIVGAGITGLTTAYLLAMKG LKVAVLNAGRILHGTTGYTTAKITAQHDLIYDQYISDFGEEKARLYYEANRDALQFVRHL VKEHHIQCQFEEQDAFVYTDTDSSLHKVFKEYEAYEKLRIPGSYVEKTDLPFETKGAVVM KNQAQYNPVPFLTHLAEEIVRKGGRIYEETTVTGYEPGSPSVLKTSGGFTVSSSHVVSAS HFPFNNLHGLYFARLYAERSYVLAVKTDKRYLGGMYLSADKPKRSLRSVLINGEPMVIVG GEGHKTGQGICTFQYYEALEKFARETFGVKEIAYRWSAQDLYTLDTIPYIGQELDDVPNL YVATGYKKWGMSTGIAAAQLNAKLILGEESPYTDLFSPSRFHANPSIKTFVVENANVAKE LIAGKLEFPTTEAGELREDEGAVVRVRGKRAGAYRDREGSLHVVDTTCTHLGCEVDWNAS ERTWDCPCHGSRFAYTGEVIEGPALKPLAKVELDD >gi|333606354|gb|AFDH01000056.1| GENE 60 67517 - 67759 218 80 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_3875 NR:ns ## KEGG: GYMC10_3875 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 78 1 79 83 94 67.0 2e-18 MAKAKVKRPTRDEFELEELGNRLVEAKDEDSLILLTVWGWEEQVYGRITVMDPRTRLVHV QDGEQLTKVPFMDIMQVDNA >gi|333606354|gb|AFDH01000056.1| GENE 61 67980 - 70277 2296 765 aa, chain - ## HITS:1 COG:BH0438 KEGG:ns NR:ns ## COG: BH0438 COG0620 # Protein_GI_number: 15613001 # Func_class: E Amino acid transport and metabolism # Function: Methionine synthase II (cobalamin-independent) # Organism: Bacillus halodurans # 6 750 3 742 756 939 62.0 0 MNALKSSSLGYPRIGAGREWKKALESFWAGKIGERELTDKLAEVRLGNLRIQLEKGIELI AVNDFSGYDHVLDTSAMFGIVPERFQYEGGEVSPGTYYAMARGEDGAAACEMTKWFNTNY HYIVPELQGARPELVENKPLKAYREAKEALGIQGKPVLLGLFTFLKLSKGYAETETDAWI DRLLPLYGQVLRELEKEGAEWVQVDEPVLSTNVSAEDMNRIEAIYKTLTEAAPGLKIMLQ TYFESVEHYDRVVKLPVSGIGLDFVHGGEKTLKLLKSEGFPEGKILGAGIVDGRNIWRSD LKEKLNTLRDILAVVPEERVILQTSSSLLHVPVSTVHEDKLDPVLRDALAFADEKLEEIV LLSKAAVSQTAETAEALQRNEKALAALRSSEARGNKAVQAAALQLQKVPAARGEGFGERR TLQREKWKLPFLPTTTIGSFPQTAEVRQARSKWRKAEWTDEQYKAFIRSEIDKWIKLQEE LDLDVLVHGEFERTDMVEFFGEKLDGFAFTRNGWVQSYGSRCVKPPVIYGDVAFTQPMTV EETVYAQSLTTRPVKGMLTGPVTILNWSFVRDDLSRDVVAYQISLALEKEVQALEEAGIE MIQIDEPAVREGLPLKKDEHGAYLDWAVNAFRSTTANVRATTQIHTHMCYCEFHDMIGSI RDMDADVISIETSRSHGELIESFEQHTYEKGIGLGVYDIHSPRVPSVEEMVSMIERALRV LDPQLFWINPDCGLKTRGGEETVAALRNMVAAAKQCRETMAVSQA >gi|333606354|gb|AFDH01000056.1| GENE 62 70708 - 71472 720 254 aa, chain - ## HITS:1 COG:MT3671 KEGG:ns NR:ns ## COG: MT3671 COG2162 # Protein_GI_number: 15843177 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Arylamine N-acetyltransferase # Organism: Mycobacterium tuberculosis CDC1551 # 1 251 1 255 283 141 36.0 1e-33 MKPEVEAYLNRIGYEGPLDGSYEALALLQEQHLHTVPYENLDILNGVPLSLDIKRLRHKI VDRRRGGYCFELNALFGWLLRQLGYPVTDYVARFWRDETQLPPKRRHHVLKVEAEGVSYL CDVGVGGIVPRRPVRLAEKLEQRQGEELYAMERDPVFGWVLSEKHHGSWRRIYSFTEEPQ LPKDFVMASFWCEHSPDSIFTKDAMVAVRTREGRNSVSGKEFKLFTPEGVRTFVPENDAA YKEALLKYFGIPSE >gi|333606354|gb|AFDH01000056.1| GENE 63 71490 - 72128 584 212 aa, chain - ## HITS:1 COG:no KEGG:Exig_1455 NR:ns ## KEGG: Exig_1455 # Name: not_defined # Def: hypothetical protein # Organism: E.sibiricum # Pathway: not_defined # 1 204 1 212 220 152 38.0 7e-36 MKILVSQPKLERNLEQLQAEFMMYPDITAAVFPEGYLHTNLSLACELAARTRTLVISGSK NPKDRAVIINREGEIVMDRAKYSGYESVKEEGLLITPILCDELVLREVEEANSPRTDLFV QPIGVGMFSEEQFDEWVAKAKEIASRHHAMVIGTSHADGSFRGSEVSLPIAYWIDRDGEP LFISKCDVRSRVVDLRTKEITVCEPAVKEDVS >gi|333606354|gb|AFDH01000056.1| GENE 64 72307 - 72417 80 36 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKDILVHLFIMTFPPHIYQIFMLTRFYKREKNETDF >gi|333606354|gb|AFDH01000056.1| GENE 65 72417 - 73586 1112 389 aa, chain + ## HITS:1 COG:BS_kinB KEGG:ns NR:ns ## COG: BS_kinB COG0642 # Protein_GI_number: 16080197 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Bacillus subtilis # 132 377 178 424 429 159 36.0 9e-39 MGILMGFSGLFSISYPVMYLVPDFYWDLRGVPLLLAFIYGGYYGGFTALGMMLIFHGIMF PSFGVSDVILYAAGFLPVLFRARDFHQYPSRKKIALSLLYTSMGAAALLIWLSYIVSHHG FIWKDLLPQVSLLVTAQLLLPVLLILWFQHMLRHDQMSIEIQKAEKLQHLSDLAASVAHE IRNPLQVTRGYIQISQKEADEKLGRYLNIAIGELDQAEKIISEFLLFAKPELTETGLIHL GDSLQQAVTMLEPYASMSGAVIELSCEDDIFIEGDSSKLKQAFVNLIKNGIESTQTDGLI RIHGYVRKHKAIITITDNGSGMTKEEIERLGAPFYTTKSKGTGLGLMVTTRLIDAMRGKM RFSSEVGTGSEVMITFPLTTKNRVSISGE >gi|333606354|gb|AFDH01000056.1| GENE 66 73600 - 73965 302 121 aa, chain - ## HITS:1 COG:CAC2242 KEGG:ns NR:ns ## COG: CAC2242 COG0640 # Protein_GI_number: 15895510 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Clostridium acetobutylicum # 7 118 9 119 122 96 43.0 1e-20 MQKPIEDLCDESCAGTETDGTALEHAKMNESMAVNMAEMFKALGDPTRVKIIYALSQQEL CVHDLSVVLEMGQSAVSHQLRYLRNVRIVKRRKSGKTVFYSLDDDHVKEIFRQTLQHLAH V >gi|333606354|gb|AFDH01000056.1| GENE 67 74093 - 76246 2242 717 aa, chain - ## HITS:1 COG:BH4036 KEGG:ns NR:ns ## COG: BH4036 COG2217 # Protein_GI_number: 15616598 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Bacillus halodurans # 4 708 14 702 707 572 43.0 1e-162 MEEHRVKGLSCANCTRELEEQIQKLEHGAEARLSYNSGKLTVDSRISMPAVEKILGNDGA YLVKSQPAAGHAHEGHGHSHHGHSHGHDHGHDHDHGGQSNRAITRNLIVSAVLFAIAFFT DGRVPGYVSIPLYLIIMALSGYMTFIKGAKNLFRLKFNIDTLMTIALVGAIVIGEWKEAT LVAILFGLNELLEGMGMEKARRSMETLLQVAPKEAVLLTDGQETVVPIASLKIGDLVQVR SGQKIPSDGIVEEGRSSVNEAAITGESLPVEKAPGEKVFGGSINNEGLLKVRIEKAYQDS SLAKILHLVEEAQETKTPTELFINRFAKYYTPLIMIISLLVIVIPPLFLGGSWSTWLYQG LAVLIVGCPCALILSSPIAIVSGITRNARHGILIKGGVFLEQLGKIDTLAFDKTGTLTKG EPHVEKSVVLDERKFYLAAAAIEKSSSHPLAKAIMKEIEAKGIRAEEADSIETVSGRGVV ASFKGERYWLGNEKSMEHLRIPADIQQQIDSLKEEGLTLVIVADNEKVLGMFGISDEIRE ESRGVIAALHKAGIHKTVMLTGDHQKTAEKVAKAVGVSEYYGSLLPEQKVDKIKELAAEG TVAMIGDGINDAPALASAQLGIAMGKGTDSAVETADIVLMQDHLGKLPEAISVARQVNRV IKMNISLALGLKAIALLLTIPGLLTLWIAILSDMGATIFVTLISLTVLIEKKPSSLS >gi|333606354|gb|AFDH01000056.1| GENE 68 76484 - 77350 785 288 aa, chain + ## HITS:1 COG:BH0672 KEGG:ns NR:ns ## COG: BH0672 COG1595 # Protein_GI_number: 15613235 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog # Organism: Bacillus halodurans # 6 283 8 281 285 214 42.0 2e-55 MTEALYKQYHSLLYSIAYRMLGTLNDAEDIIQDVYLEIQQQDLVRIGNMKAYLCKAVTNR CINFLQSARSRREIYTGEWLPEPVSALPGLDPAERIVQEETVSYALLVMMERLNPVERAV FILREALEYSYREIGDTLQKSEENCRKIYSRVKAKLVRKEAEPLHKSEREEQFVKLFLDA AKTGDFADFIAQMTADAVLVTDGGGKVRCALRPIYGSHRIRALFEGIWPRGYFSGSLLPA RINGELGFVLIRDERPVLAISMTWDWEQSRIDRLFIVSNPDKLHGIRL >gi|333606354|gb|AFDH01000056.1| GENE 69 77466 - 77909 483 147 aa, chain + ## HITS:1 COG:BS_ydfG KEGG:ns NR:ns ## COG: BS_ydfG COG2128 # Protein_GI_number: 16077607 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 1 139 1 139 147 154 48.0 7e-38 MKTRLQMDQLIPKGYAAMVGLEQYLGSTSLDKSLKELIKIRASQLNGCAFCIDMHAKDAR KHGETEQRIYALNAWRETPFFTPEERAVLALTEAVTLVAETHVPDDVYDEVRLYFDEVQT SEIIMAIVVINAWNRLSVSARKMPAAD >gi|333606354|gb|AFDH01000056.1| GENE 70 78126 - 79571 1307 481 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_5042 NR:ns ## KEGG: GYMC10_5042 # Name: not_defined # Def: GerA spore germination protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 7 481 9 485 486 623 66.0 1e-177 MEMKGLMYENIQQLLVGSEDTIYQPFLLYERSCVLIYIQSIVDVKTLQEKVASALITEAQ GDHDWDEFLQLLDEGTLFPLPAKLVYASQDAVREIVHGKAALCIEGLGCAYVFDVVKYQK RAVSESQNELVVIGPQEAFIEDIVSNLSLLRHKIKHPDLKTVKYIVGTYTQTTVYMIYIE GLCKPEILTDLDKGIREISIDGALGISYLSEQMKKGNKTPFPQFQYTERPDSVAASLLEG RVALMQDGTPSALLVPVTLFSLLQSSEDYYQSYLSASWIRLVRIFFAMISMLLPSLYVAI TTFQPEIIPSDLLLTISAARENIPFSALTEALIMELTFEGLREAGTRIPKPVGQTISIIG AIVIGQAAVQAGIVSAPMVIVVSITGIASYIIPHFELGLAFRLLRFPLLLLGGTTGLIGV FIATFIVYGHLTSLRSFGAPYLSPLAPQVLRDWKDIFMRVPSPFMTKRSKAYTDRNFRRQ K >gi|333606354|gb|AFDH01000056.1| GENE 71 79573 - 80721 652 382 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_5043 NR:ns ## KEGG: GYMC10_5043 # Name: not_defined # Def: germination protein, Ger(X)C family # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 17 379 17 380 388 363 46.0 7e-99 MSRIRILLALLPLLLTTGCWSKVEIDEQTFIFAIYIDQGETPDKVEVTISSPLPNRLTSG QQAGSGTSQGQPYAIISKQGTSIPQALMLIQRDLTRKINFGHTRIVTVGRQYAENGIKDL LSWMQREPTFHISTIVNTAPGKAREIAELTPVYEKMPAEVMLKMSQQRAMLDTNAKECLI AEASGQGVATNYLSMGIMKMASENEKAEPWAGIQGVALYNNDKLTGVLPSAEGRALAWAL GRLGRQVYTLSWDDGQSKADILFNQLTSKKSVRMGPDGPRFTLTLTGDGDLIHKRDPMNR DENEMKTILEQKLREKIVKQLKSAFSKTQQAKSDVLQLGMLLDWNYPKFWEKKRENWTDY YKNDLDIEFKCEINVKQTGIQS >gi|333606354|gb|AFDH01000056.1| GENE 72 80766 - 80957 247 63 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MIAVAFFAIGLLEWIRTNPKPPGDTVKFWVLFSVLGCWSVLASVFTWWPQPNQLMHLLLG WLE >gi|333606354|gb|AFDH01000056.1| GENE 73 80990 - 82093 899 367 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_5045 NR:ns ## KEGG: GYMC10_5045 # Name: not_defined # Def: spore germination protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 350 1 349 371 293 43.0 9e-78 MRSTSWQTFRFATIYMISQPIAFLITPLISTSGYQGWISLLLGGLISALFLCCTVYIGRL SPGVPWVQSGEQMIGKWPHRFFLFVVLYWCVYYVSIDLESFTLFYGSIYMRETPQWFLQL IIGLVIVITARWGFVSIVYMADGLFLITLLGIAIILGLFTANANFQMFPALWTHHKMGLA FRDTFTAVSWFGEWFVFLFMVPHLKFGPKTLRNLLSACLLVTFAVSLQWMLTLFNFGSYY GRRIQYPLLELIRSSTLSGFLGNADPLLIGLWTTSMFIHDAFLLYVATKCAAQLFKFQTR KAILPLLGGTAVVVALQYSRDTTRFLSDTNSLSIVLFWVLVDALPVYYAVIVYVRIKFSK KKFQITE >gi|333606354|gb|AFDH01000056.1| GENE 74 82215 - 82709 311 164 aa, chain + ## HITS:1 COG:BH3804 KEGG:ns NR:ns ## COG: BH3804 COG0454 # Protein_GI_number: 15616366 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Bacillus halodurans # 10 160 2 152 167 140 44.0 1e-33 MSTSAAKSSVLLDFYKTEYNDGLRSFYLPDEQLQFSALPHEVLTAAAQDPHRYPVVILAD SKPVGFFVLYDGEEIALYSDDPQTIVLRAFSVNHAEQGKGYAKQGLLLLPDFVRKQFPLA RIVGLGVNMKNSPARNLYLKCGFEDHGRTKIGPLGPQHILTLPL >gi|333606354|gb|AFDH01000056.1| GENE 75 83089 - 83781 480 230 aa, chain + ## HITS:1 COG:BH0391 KEGG:ns NR:ns ## COG: BH0391 COG0640 # Protein_GI_number: 15612954 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus halodurans # 10 221 9 220 234 208 49.0 6e-54 MKASPDTIALAGLIGEPSRMQMLLELLSGKCMPASELAGAARITPQTASSHLAKLVEGGL LTVELSGRHRYYKLAGPEVADALEALNTLARPKPVKSLREYDRLNHLRFARTCYDHLAGE AGVALADRLLETGVIGQSGRDFTVTEKGETFLRAFGINCAELRRSRRQFAKCCLDWSERR YHIAGSLGAALTEQLFRREWIERIPGGRAVRITDTGRDGLRHLGVDLNLP >gi|333606354|gb|AFDH01000056.1| GENE 76 83859 - 84467 461 202 aa, chain + ## HITS:1 COG:BH0392 KEGG:ns NR:ns ## COG: BH0392 COG1853 # Protein_GI_number: 15612955 # Func_class: R General function prediction only # Function: Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family # Organism: Bacillus halodurans # 12 202 8 202 202 233 58.0 1e-61 MIKQEVQETFRTIRPSILYFGTPVVLLTTLSEDGSTNISPLSSAWALGSRIILGIGNGGK GLENLSRTGECVINLPDSSLWEQVEKLAPLTGKSPVPDNKRELYRFERDKFAAAGFTPLP STCVKPQRIQECPLQIEAALVQVHPSEGFCIVETESRAVHAEERIVLGEHYVNPAAWNPL IYSFRHYFGLDAEKGKSFKSET >gi|333606354|gb|AFDH01000056.1| GENE 77 84496 - 85260 329 254 aa, chain - ## HITS:1 COG:no KEGG:BpOF4_17430 NR:ns ## KEGG: BpOF4_17430 # Name: not_defined # Def: hypothetical protein # Organism: B.pseudofirmus # Pathway: not_defined # 11 254 8 263 263 112 29.0 2e-23 MKDREGIKRKRIWSFILSKLAAAGTLFTIFVIIALADDAGLYQISEAARFPYLWWLVYGY AVMYSILVELILFKFFPQAKVGVRMIVYGAGGFAPFAVFFFNTLYIAIPGLIGSVCALFF YAADSLYRRTKIMSAVAGLCIPAVLLVFAGGDFTETKQWREIRTHSSYEVSFAYFNGEKA VPVPIKQGETALLTYSWTMKNGGYGVRFTDVKQVPGDPPGDNKIRIRAPESGISTLILTG DHAEGTFRVEWTVE >gi|333606354|gb|AFDH01000056.1| GENE 78 85523 - 85825 293 100 aa, chain - ## HITS:1 COG:no KEGG:Bcell_0646 NR:ns ## KEGG: Bcell_0646 # Name: not_defined # Def: stress responsive alpha-beta barrel domain-containing protein # Organism: B.cellulosilyticus # Pathway: not_defined # 3 99 5 101 102 91 46.0 9e-18 MSTIRHLVLFNLKHEEGSAEAEKFLSDGRELLASIPQVQKLQVLRQISLENDYQYAFSME FSSQSDYDEYTAVPRHIEFVEQRWLPEVVRSFEADFEVHS >gi|333606354|gb|AFDH01000056.1| GENE 79 85883 - 87304 1163 473 aa, chain - ## HITS:1 COG:no KEGG:ROP_02890 NR:ns ## KEGG: ROP_02890 # Name: not_defined # Def: hypothetical protein # Organism: R.opacus # Pathway: not_defined # 11 449 4 445 455 331 36.0 5e-89 MNDFKKEQGKPRKAIVIGNSMAGKLAARVLSDYFDTVTIIEQDPQPEGPYPRKGTPQSYH THGLLKSGENTLDKFFPGIMQELEGHGGERLDFIRDISWVYQNFHFVRFNSGFEVVSQSR PLLEWRVHQRLLQRSNIEFAYSHRVVQYISSPGENRFTGVETENLVTKQSERLEADLIVD AAGSATKTPDQLLKHGFDALPQSEVHINLAYATRMYERDPSVSHDYKSVIVFPNPPEVSK GGLTFPIEGDRWSVTLVGYGDGNHPPRDDQGFLNFAKSLTHPHLYDHIKSLKPAGDIHVY RFPSQVRRHYEKLDRFPSGLVVIGDAFCRFNPVFGQGISIACLEALELQKVMQEVRAGKI KAEAIPVALHKRLSALVDPTWMTATSDAFLYPNTKGKKPGGLGFMQWYVRRLYRLSEYDQ DVYGKFIRILHMVEKPTELFKPAMIYKVMRAKMPKPDKRPPGSPVNRDREQTL >gi|333606354|gb|AFDH01000056.1| GENE 80 87356 - 88612 1341 418 aa, chain - ## HITS:1 COG:mlr2770 KEGG:ns NR:ns ## COG: mlr2770 COG2814 # Protein_GI_number: 13472465 # Func_class: G Carbohydrate transport and metabolism # Function: Arabinose efflux permease # Organism: Mesorhizobium loti # 27 407 1 382 391 240 40.0 5e-63 MSTKQPKEGEAAHASGAGIQGPERTRMPLAVYFLAVSIFIICTAELLPMGLLPQIARDFN MNVSSAGLLITVYALGVAIGGPLITAATGRVEKKKLLIALLLLFVAGSLISAVTTNYYLL MVGRLFCSFSHGTLVGVAIVVVQRLAPPGKEGSAISYLTVGLTVATILGVPVGTFIGNSY GWRMSFYALTVAAAICVVGMAWLVPTIKSGKAVGMAKQTREIFRAKPLVALMTTVFSSGG LFAGYTYIAPYLEEITGFTPTAVSPIMLAFGIGSAIGNIASGKLADKGLMKTLLGSLAAM IITMTAFALLGQVPILAVIFSFLWGLTGFAIVTPLNMLVLRKAGDAADLAASLNISAFNV GSAIGAAVGGVAINTALGLRGAPLSGVAIGLIGVLFAVTLMWMDRNSAYRQTVTKSST >gi|333606354|gb|AFDH01000056.1| GENE 81 88648 - 90270 1558 540 aa, chain - ## HITS:1 COG:aq_356 KEGG:ns NR:ns ## COG: aq_356 COG0119 # Protein_GI_number: 15605865 # Func_class: E Amino acid transport and metabolism # Function: Isopropylmalate/homocitrate/citramalate synthases # Organism: Aquifex aeolicus # 1 518 1 520 528 575 54.0 1e-164 MDNRITILDTTLRDGTQGEGVSLTVEDKLKIAKRLDMLGISFIEGGWPGSNHKDVEFFIR ARELNLQQARITAFGSTRRKNSSAERDANLRQLLDIGVGTAAIFGKSWDFQVQTAIQTTL SENLKMIEDTVRFLKRSGIGVIYDAEHFFDGYKSSRAYAMSTIRKAYEAGADWIVLCDTN GGTLPHEIAAIVASVKEQLDCPLGIHAHNDCELAVANTIAAVMAGAAQVQGTINGYGERC GNANLISVIPNLQLKLGLPVITAEQLAGLTSTARYVSEIANMHMPVNQPFAGHAAFAHKG GVHVSAILRDSSTYEHIAPGLVGNRQRVLVSELSGQSNLVFKAQELGLELEANNPNTKIL IERVKELEHQGYQFDGADASLELLIRSVHGNLEEILTLESFKITVVKSVDQAILSEAVVK VKVHGESVYNAAEGNGPINALDNALRKCLMQHYPSLQTMHLSDYKVRVLDDKDGTATKVR VLIEFSDREESWSTVGVSENIIEASWQALCDSIRYALLDVKPALNKRAEGVKEAVGLVNH >gi|333606354|gb|AFDH01000056.1| GENE 82 90353 - 91171 728 272 aa, chain - ## HITS:1 COG:MT0861 KEGG:ns NR:ns ## COG: MT0861 COG0500 # Protein_GI_number: 15840253 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Mycobacterium tuberculosis CDC1551 # 14 157 12 157 270 71 35.0 2e-12 MSGGITENRARLDGSAASVRSVFDARTVGSSHRRLAELLEPGQSVLDAGCGTGAITKGIA EAVGEEGRVVGIDNNEGLISYARETFGGQAPLAFETADIHYLPYRGEFDIVTTARVLQWL ADPRQALGQLIEAAKPGGRVIVLDYNHDKISWQPEPPLSMKAFYAAFLKWRSDAGMRNGI ADELPGVFADLGLVDIRSSEQHETVTREDGNFLQQAGIWADVAATRGVQMVADGYLSEQE RAAAETEYRQWVQTEAISQTMYMLAVEGVKPE >gi|333606354|gb|AFDH01000056.1| GENE 83 91203 - 92963 1811 586 aa, chain - ## HITS:1 COG:PAB0888 KEGG:ns NR:ns ## COG: PAB0888 COG0028 # Protein_GI_number: 14521546 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] # Organism: Pyrococcus abyssi # 11 543 11 539 562 287 33.0 4e-77 MYIKEIVALWLKRMGIHTVFGIPGSYVLPMIDEISRKEIRFVLSQHEYGAALMADGFAKA GATPACVITTTGIGATNALSGIVNSFTDSQPVILLTGQVPISTYGKGALQECVGEGRTFD LEALMSNVTKYSKLVESADHLLDTLKEAEMHLWSGRKGPVHICIPIDVQFTEIHFEGFEP FAFPKPTEIVDAAGEEVSRLGNLLKESQKPLLLLGAGANYSHNEEVVEQIADLGIPVATT LRGKGILSENHPHALGCTGLHGKSAANYYLYREADLVIAVGVSMSEFTTQGWDSIFDKVP LVQVDIDPKQIGKNYKVRIGIAADSETFLLALYDLLEDASWEKATAALRQSKHKFADADR EKDLSYVSAVEGKLHPVQVIETLQKLLPLDKTIWVTDPVSWTETHLLSKGAGTYIEGLNG AAIGYAPPAAIGAKCAKPDSYVVSIFGDGGFRQTAMEMATATSHEIPVLWLNLNNEKFES INNAQKSYYKGNVVGTSYKPIDYVAFGESMLIDTIRVTTVEELQEAAKSFLHEERPLLLD IQIVGSVVSAPKFRQLARYKTWKLTTSRKSSEDMKEIVSYFLKNRY >gi|333606354|gb|AFDH01000056.1| GENE 84 93026 - 93712 805 228 aa, chain - ## HITS:1 COG:AF0861_2 KEGG:ns NR:ns ## COG: AF0861_2 COG0684 # Protein_GI_number: 11498467 # Func_class: H Coenzyme transport and metabolism # Function: Demethylmenaquinone methyltransferase # Organism: Archaeoglobus fulgidus # 48 214 43 208 215 82 31.0 6e-16 MITEEKGIDLSTIEQVRRQFANIGCAQLNDASQKYTVPFPTTFQNRTRHLKLCGPVYTVN TDNDMLPGLEALSKAPQGSVLFLNNVNERSEALAGDIYVLEAIRRKLGGLVINGAVRDID DINKLDFPVFSTEVTYVSAKTAVKPATKVPDTVQAGDIVIEPQDWIFGDNDGLLLIKRKY LNAVLQGALYVEQREEELKKEILSGKSMASLTGLDDYLAGKGPLKFDV >gi|333606354|gb|AFDH01000056.1| GENE 85 93734 - 94915 1074 393 aa, chain - ## HITS:1 COG:BS_ycnG KEGG:ns NR:ns ## COG: BS_ycnG COG0160 # Protein_GI_number: 16077458 # Func_class: E Amino acid transport and metabolism # Function: 4-aminobutyrate aminotransferase and related aminotransferases # Organism: Bacillus subtilis # 6 373 20 423 436 110 28.0 6e-24 MTLSVFDEKSIYGADYYLAGSKNEFLILEDREGRRKHYIDCMSAYASVNFGHCNPDIAPF RELRSDIAACFYPKEAEQYAQWLLGKLKAPGYELLFQVGGSMAVSTALSIGQRVREGKIA YLKGSFHGLGLDALAVTSVHKNFALQQTSLLGELEKHCIEIEPGQTDIPWETISTFIYEP VQGANGYIPLPAKWLTDTAAEARRHGVVVVSDEIQCGFYRHGHLSVSCHLGIEADIYLFS KSMTNGLYPFSAVVYRGSLKESIPGSLFLAHTFQTSSLGCFAAMAVAEYIDASRPEELCG EIEALIREHFPFELPLLRDVHLTGPTLSFEVEGVSGKSIVQQCLERGILIFTGGPAGQRI RFAPPLTIEKTNLVYAIKQLADVLTHAGAVHTL >gi|333606354|gb|AFDH01000056.1| GENE 86 94929 - 95849 721 306 aa, chain - ## HITS:1 COG:RSp0786 KEGG:ns NR:ns ## COG: RSp0786 COG0332 # Protein_GI_number: 17549007 # Func_class: I Lipid transport and metabolism # Function: 3-oxoacyl-[acyl-carrier-protein] synthase III # Organism: Ralstonia solanacearum # 11 305 15 307 308 70 25.0 4e-12 MVGISHVHYVLGDYKPLTEIPEMDTSKENLAKFRINGVRQYCGSDKTMYQLALETATATL EKSGLDRSSVGAVFFATGNHHCKELHEEDFAGRLLDELGLGSAFFYGVFMQYCASVAAAL QLAGQFAEANGTNVLLVSADKILDYGPIVRIIPGVIGLHSDGAVSCIVTGRNPQFTMTPF QTLQDSSSWRLMYGQEKKGLQDSFLTNSRLVISRVLEANNLPKESIHHVVTNNFNFTISK NLSVYWEIPYEKFFSLNIPRTAHCPAGDVFINLLDMKTAGIISRGDSILTFFPAPHSWMG TLLTKN >gi|333606354|gb|AFDH01000056.1| GENE 87 95884 - 97050 971 388 aa, chain - ## HITS:1 COG:BS_yjiB KEGG:ns NR:ns ## COG: BS_yjiB COG2124 # Protein_GI_number: 16078286 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Cytochrome P450 # Organism: Bacillus subtilis # 21 379 26 394 396 150 28.0 5e-36 MRSEATPLVIDYMSTEFRQDPWPLYTALRQEEPIHWSEKQQCYFLSKFKHIKQILLDTEN FTVEHPFRTTRHLFGSTIIDMDGKKHSERRPIMSNQFKPSAMQKGMEDAVRQVIKRIVDG IPSGREVDFIQEVAIPIPMTIIMEAIGLPAEDAMWVYHKMRPIIIHLDNPKSHFQAALEA SDELYAYIENFVRGGTSRGMIAHFRAAVEKGQWTQEDMNRHILLLLSAGSETTACSIANI MAILLDKPEELARVMEDGEYLKSAVQESLRWQPPLHTTTRICKKDYELDGVVIPKGKFVI LLLASANRDEEMYDNPAQWIPSRKEKANLSFSMGSHNCLGFNLAKLELEETFLQLFNRFS GVKLAQKERPVIQGQTFRIPQKLLLTFS >gi|333606354|gb|AFDH01000056.1| GENE 88 97064 - 97324 357 86 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTKEDVYAKFVEHIQKTNQVEDLQIDENDNLLEHGYIDSLSMVDMIVFLEEQVGREIVIE DYDIRKFYTLKSIYETFFQDHLVSSN >gi|333606354|gb|AFDH01000056.1| GENE 89 97339 - 98898 1084 519 aa, chain - ## HITS:1 COG:BS_ppsB_2 KEGG:ns NR:ns ## COG: BS_ppsB_2 COG1020 # Protein_GI_number: 16078894 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Non-ribosomal peptide synthetase modules and related proteins # Organism: Bacillus subtilis # 14 509 456 942 1510 228 29.0 2e-59 MYRSDEPKFLHDYFLKFAEKTPESLAIVHHSEKWTYARLADKSRDYAERLKIAGLRTGDR VVLELDPSAEAIAVMIACSIRGFVFIPLNPDTPQERLESILTRTGARLHIQKGRSRKLSP QAEAGQAYLDEGHLLVPEVSQAADDLSTDSKLLDTNLVYLIFTSGTTGQPKGIMMTHRAV VSYFDGMNAQCALPQNTRVGSVSSLQFDFSLVDMGLAFGTGGTLVIVPRSLIFQPRRFLE HLHQQRVDLMSGVPSIWKNVLAHERQPVEDIHLHSILYGGEYCSARDLRKLQSLLGLKRI INCFGQSESIACSFKDLPLPLPDTESISVGSGMHNTEMLLVDEAGIIIREPGITGEIYLR GACLFSGYWLEEELTSSRLVPHPETPCTGEKVFKTGDLAYMDENGEFYYVSRTDNQVKIM GYRVELEEVERRLLSHPKVDGVCLIVHEGNKTELHAFMVLTDQENTQTVQQQLRAYCAEM LPSYMIPSRFSFLKEFPLNTNGKVDRKALKAMQIPTLTR >gi|333606354|gb|AFDH01000056.1| GENE 90 99155 - 99775 500 206 aa, chain - ## HITS:1 COG:SA1700 KEGG:ns NR:ns ## COG: SA1700 COG2197 # Protein_GI_number: 15927458 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Staphylococcus aureus N315 # 8 199 3 199 209 58 25.0 7e-09 MREKNKPIHVFIVDNSSGKNPAIADYLSQSDQFQIAGIDTGMKSASFTHLGVLPEPFVVV MLMSDSPHCDILWIKKMKKTYADLRIIVLSEYNYVLFFHTLMEAGVNNILNMDTKPEQVA QVIECTLDGHFFLPYSFYHLLNHISSVFTEVEIQTLELIALEYTNAQMAKELNVTIRTVE SRLTKIYDKLEVSSRRGAVKKIMQMK >gi|333606354|gb|AFDH01000056.1| GENE 91 99931 - 100755 653 274 aa, chain - ## HITS:1 COG:BS_bfmBB KEGG:ns NR:ns ## COG: BS_bfmBB COG0508 # Protein_GI_number: 16079459 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes # Organism: Bacillus subtilis # 26 274 175 424 424 253 52.0 3e-67 MEKGETSHTESKEKPVHVRSTGIHLSDNPPTPFGQTEAETVGEAEDFIKVTPVRHTIAMR TLQSVREIPHALTSIETDVTDLVKLRTKLKDDFMRREGVNLTYLAFFIQAVVSAIKDYPV MNSVWAVDKIIMKRNVHISLLIGTEDSVLAPVIKFADQKSVSGIALEIASLTQKARTGRL TLDDMQDGTFTINNTGAFGSILSSPTINYPQAAILTIESIVKRPRVVDEMIAVRSMANLC LSSDNRILEGRVTGQFLQRVKENLEAFHPENQIY >gi|333606354|gb|AFDH01000056.1| GENE 92 101176 - 101709 582 177 aa, chain - ## HITS:1 COG:BH2253 KEGG:ns NR:ns ## COG: BH2253 COG2259 # Protein_GI_number: 15614816 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Bacillus halodurans # 1 161 3 158 173 155 54.0 3e-38 MNWLRTNVYASGLLLLLRLYVGWKWASAGWGKLTGGFDASGFMKGAIAKPVMDKATNELV YPTYQAFLENVALPGVKAFNILVPWGELLVGLGLILGGLTAVAATFGLLMNFMYMFAGTV SSNPWMILLGFFVAAAGANAGRFGLDYYLLPYLASKAGRKRKAVVFDKDNKPAFEHG >gi|333606354|gb|AFDH01000056.1| GENE 93 102000 - 102677 531 225 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_2731 NR:ns ## KEGG: Pjdr2_2731 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 3 225 4 224 224 316 68.0 4e-85 MASIYERALGEEFGRLHPRIRERFGFSSGDGVASIGEGVMHRIWASKWTALPLLIGTSRH IMFPESGTEIPFTIENFAYRDGYGRETVTWNRHFTFRSRVRHFDATMIYSSRRRRIVDYL GNKQHLAVDLELAAAPNGGIRIRSGDQRFYEGWLQFPFPAGLTGTAEVCEWFDDAEDAYK ISVNVSNPVFGPVFGYQGTFRAQLVPCRMTDIPDHVKPLREEIRE >gi|333606354|gb|AFDH01000056.1| GENE 94 102650 - 103606 968 318 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_2730 NR:ns ## KEGG: Pjdr2_2730 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 1 299 1 299 305 335 57.0 1e-90 MTAKPIYVELDIQTDMETLWKATQTPELHQQWDLRFTEIAYLPRSGDREPQRFHYRTRIG FGMNIAGTGETKTKMNLLTGERMSGLKFGSPQRISLIRSGSGYWKYSPKGGGVTFATRYT YDTRFGAAGRWFDRFLFRPLFGYATAWSFDMLRIWLEKGIPPSVSIQRALMHYVSAGLLA LLWVYQGLVPKLLFPGGGEMAILQAAGWFPGGEKPVLALLGAGEIGIGLLAAAAHRQAGV YILQAALLLMLPAIALARSPQLLQAPFNPLTLSGAMAGLCLLAFWSRRELPQAGRCLRKP RFNHKEGELKWHPYTSGR >gi|333606354|gb|AFDH01000056.1| GENE 95 103638 - 104048 178 136 aa, chain - ## HITS:1 COG:BS_yuxK KEGG:ns NR:ns ## COG: BS_yuxK COG3011 # Protein_GI_number: 16080202 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 125 12 136 137 132 47.0 2e-31 MIDGSCILCHGITRFVIRRDPSRRFRFAAIQSEAGRRLLKTQGLAAGDPDTFVLIQDGRA YTKSAAALRVFRCMPGFWPVLSLAAIVPVSARDRVYAWIARGRYRWFGRRENCLLPDSDI RKRFIDEGRETDGTGI >gi|333606354|gb|AFDH01000056.1| GENE 96 104252 - 104890 715 212 aa, chain - ## HITS:1 COG:Cgl1963 KEGG:ns NR:ns ## COG: Cgl1963 COG2197 # Protein_GI_number: 19553213 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Corynebacterium glutamicum # 3 205 1 209 210 85 31.0 6e-17 MELIKVLLVEDDPDWIKAMTSYLNKEDDLLVVGAAVHPDEAVSMAAKLDFDVVLMDIQLT DRGLDGIYTAVEILELRPVKIIMLTSMSDEHVMTEAFTAGAVNYIEKTRFREVPHAIRSA YRHPAAMDALLREFSRLKREEQLKKLTAAEREVYELIEEGYTQSQIEKKLVKAESTLKNQ VNKMLKKLGVKSSKEAVEKVRRRGISRDKQSD >gi|333606354|gb|AFDH01000056.1| GENE 97 104877 - 106226 1020 449 aa, chain - ## HITS:1 COG:PA2882 KEGG:ns NR:ns ## COG: PA2882 COG0642 # Protein_GI_number: 15598078 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Pseudomonas aeruginosa # 255 440 179 367 371 102 32.0 2e-21 MLYYFLALSLASLIVLIPHLHKETNRWAAFFLFSASIGGLTGLLKQQGFTELAHASEFIN HTLTPYGVLVFSLVYSGVLENRPRARRAAKVLLLLPVPVMLIYTVARDAFAIHYGPLLLW TAPYYLGACSLLVLSLRREGNPVRKRNRLITTLIIVPTLLGVLLFINVARVFSPEFDFFS YVSVFMMYSFAVALLCVFVYGVLGIRLRFERDSLDTTMQAVTSGTTLLNHSIKNELGKIA LSTVNLQEGLDEKDEEAKEHLRIIAVASDHMLDMVGRIHNRTKEIALKERPVPFDELAME VVRRHGQLFARQGITVKTVFDWRPVVRFDPVHLTEVIGNLLGNAAEAMPDGGTLTVTLAS ARHGAVLSVADTGGGIPSDRLSRVFEPFYTTKKKAVNYGLGLSYVYNVMQKSGGSVEISS KPGAGTCVRLYFPRNKIVQLNGEKPDGTH >gi|333606354|gb|AFDH01000056.1| GENE 98 106376 - 106459 153 27 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTTNWKERLTGITGADLGMEGGIYYEP >gi|333606354|gb|AFDH01000056.1| GENE 99 106449 - 106886 531 145 aa, chain + ## HITS:1 COG:HP0866 KEGG:ns NR:ns ## COG: HP0866 COG0782 # Protein_GI_number: 15645485 # Func_class: K Transcription # Function: Transcription elongation factor # Organism: Helicobacter pylori 26695 # 30 139 48 156 164 59 33.0 2e-09 MNLSLTGSRHQLINQLVYFDEELHQFLELYFPSPTKSRTYTEERLQEYSEALTDLISEFS EELLHSKVLIGSKVQIRYLDDNQSDTYSIVFPSKTDPSSNRISFLSPIGSHLLLGTREQT FTIQTPSGEYSVLIEDIRYMNAGDV >gi|333606354|gb|AFDH01000056.1| GENE 100 106973 - 107845 801 290 aa, chain + ## HITS:1 COG:no KEGG:PPSC2_c2190 NR:ns ## KEGG: PPSC2_c2190 # Name: not_defined # Def: S-layer domain protein # Organism: P.polymyxa_SC2 # Pathway: not_defined # 1 289 1 305 322 236 43.0 9e-61 MKTKKNMIAALTLGCSLLAASSASAFSDVQGADAAVIASLQNKGVIQGVSEDKFAPQGKL TSVQGVHLIVKALQLKAADVTLSNPNAPWYAESLEIAAKNGVPVGLAADPSAELTREQFA QLLYKGIQATGDYPLIKMYIQVADEDQMTPSYQGSIQNLLLMKVAALDDKSLFHPQDRIT RIEAAGMIAKAIDFTDRHKEQTDNQENEEVSFTIEKVNADINKIVLTRREQPSPGYGLSI TKIEMNDSGQAKIHYKLTSPEPGKMYPQVLWTSKTETYLSSKYKVEIQAN >gi|333606354|gb|AFDH01000056.1| GENE 101 108044 - 108568 403 174 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229247674|ref|ZP_04371725.1| acetyltransferase, ribosomal protein N-acetylase [Catenulispora acidiphila DSM 44928] # 13 171 9 167 171 159 44 1e-37 MHTPHSGQPESFEISVRPWSENDLTLLKRMNTAEMWAHLGGPESEEALASRHQRYMKAVP GKVRMFTILFGDEAVGNVGYWAQHWRDQDVFEVGWGVLPEFQGHGIAMTATSAMLDILRD DVPGAVVYAFPGVSNSPSNAICRKLGFSLAGETEVEFPKGSWMKSNEWRLEFPG >gi|333606354|gb|AFDH01000056.1| GENE 102 108863 - 109276 369 137 aa, chain - ## HITS:1 COG:PA1358 KEGG:ns NR:ns ## COG: PA1358 COG3865 # Protein_GI_number: 15596555 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Pseudomonas aeruginosa # 9 134 5 131 132 131 51.0 4e-31 MNQVKPSAVTPFLTFTGQAEEAMKLYTSVFENSEIIRITRYGPGEHGEEGSVMHASFSLN GQAFMCIDSSVKHDWTFTPAISLHSFFETEEEIQRVYEELSRGGQILMPLASYPFSKMFG WISDRYGVTWQLQLTDS >gi|333606354|gb|AFDH01000056.1| GENE 103 109582 - 113967 3007 1461 aa, chain + ## HITS:1 COG:BS_yngK KEGG:ns NR:ns ## COG: BS_yngK COG1649 # Protein_GI_number: 16078889 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 587 1046 35 497 510 467 48.0 1e-130 MDRTFRSYRPTLSLFLAFALLIGLFPSISASAYSPPSSSLPVSSVTSVTYGTYNSLALTP NPVTVTPSSLQQFAVSAYDANGSAAPLQAGDVSWSADSAIGTIDSSGLLTAAAGGGGFKA GYVTATYGGLSTRALVMVGSKATAVIEDFETVNNGKALLSAGTAGAAGTKSSISLAERPE PVLYGSRSLKFAYDMRGTAGTSAAFVSLRNPDTGALDRPIEGTPNKIGVWVYGDESSHWL RARLRNQAGVSFTVDFTSSTGFNWKGWRYVTAEIPSSQPGPLKFMDLYLVETKDTNKNAG VLYYDRLSAIYSNTEITGLDLTGLTPMKTGQSKTAEVYMTKANSTSPQKVENGVSFYSSN PDVAVVDGIGRVSALKAGKAVIAALYSDSQPAAFELDVTDDEPQVLSIHAFAPDQLEAGR TGTPKVFAAYANRADSLEVTKEARFASSNPAVAEISVDGKIVAKSPGSASVTVTFADRQA VIPVTVIEPVPVLAKIQLTDMKSMNIGAVRQAKVLATYTLLDVPQPPAAAASGVTYKSSN PAVAEIDASGTLTAKTIGVTTISASLNGKTDTYSLVVNKETGAPKHEMRAAWIATVENID WPVKGTYDAEQQKRQLINLLDELEATGINTVIYQVRPTSDAFYRSALNPWSAWLTGTQGK DPGYDPLAFAIEEAHKRNMELHAWFNPYRISNDTDKSKLADTNPAVRHPDWVVSYGGKLG YNPGKPEVKRYIIDSIMEVVNNYDIDAVHFDDYFYPYPVTGVDYPDAAEYAAYGSGMSIA DWRRSNVDSLIRQLSAEIKKSKSYVQFGISPFGIWKNKANDPAGSETNGLESYSAIYADS KKWVDEQWIDYITPQLYWNINYSPAAYDKLIDWWKRQVEGKHVLLYAGHGVHKIGDNDPN WLDPDQLPNQILFNRNFADVKGSMFFSAVQVLDNKLGFQDRLKTDLYKYPSLMPEMSWLS KSLPAAPAVTAAAESSAIKLNIQTEANSTAGTYVIYRSAGAGAPDTSDPAHIWKQVKAGP AGVQAVVDNTVKTGTTYTYVVTALERGSSLESHGTILAATAQSSSGSDGSGSGGTGSVGG SGPTDPSVPTPPPIPGDGVLVLEPADLKETDGKITVTVPDGIREVHLPADTGTTMGNSRP LLLRFANVSVSIPNPVIQQWQSLTADTGAKLVFKAEPVEESQLQALVQAAEIKLGAEIRA RGMYDFRMEVRAGGKTAAVMDRFPTPLEISFQSAQGSDLSRTGLYHLAGDGTLQYIADQK PAGSGTIMASIRHFSTYGLLEVTKSFQDVNAGHWAYPAISELSRKLIVTGVTEDHFSPQR QVTRAEFAALFVRALGLPQKAVTPFSDVKAGDWFAGEVAAAFDAGIVTGMTDSLFEPGGA VTREQMAAMLIRAYEAKHGKLSAQSPSVSFADAGSIREWAKGDVAKAAAAGLLSGREGNL FAPQAVLTRAESAQAVYNLLK >gi|333606354|gb|AFDH01000056.1| GENE 104 114076 - 114414 400 112 aa, chain - ## HITS:1 COG:BS_ytcD KEGG:ns NR:ns ## COG: BS_ytcD COG1733 # Protein_GI_number: 16079955 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus subtilis # 8 107 3 102 126 133 68.0 7e-32 MPAKSKNKRTYNIPVEAILDVIGGKWKTVILCYLTEGPKRTSELKKDIPVITQKMLTQQL KELVEDEIITRTVYNQVPPKVVYELSPLGWSLKSILDQMCDWGDQYIKEYIK >gi|333606354|gb|AFDH01000056.1| GENE 105 114813 - 115073 95 86 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKLSLARQLGGACTVQLDLDKPAPFQKTSLSDFDLIVSALLAPADRLGQAAVEYKFAYIG LSRLADQTVPSLITAVHAPPERPWRC >gi|333606354|gb|AFDH01000056.1| GENE 106 115145 - 115720 485 191 aa, chain + ## HITS:1 COG:BH3885 KEGG:ns NR:ns ## COG: BH3885 COG2249 # Protein_GI_number: 15616447 # Func_class: R General function prediction only # Function: Putative NADPH-quinone reductase (modulator of drug activity B) # Organism: Bacillus halodurans # 1 188 11 198 202 244 61.0 9e-65 MKVLTVVAHPRTDSLTMAVTDRFARGLQDAGHETEVLDLYRSGFNPVLNETDEPDWTDSG KQYSVEVMAEIERMKRHDGLAYIFPLWWYSLPAMLKGYIERVWNHGFAYGPQKLPHRKVL WLSLAALTPEQLAKRNYDRMINHQLNVGLAEYAGIPTSKVEFLYDTLSSNPDHIQDLLQQ AYEHGLHYGCE >gi|333606354|gb|AFDH01000056.1| GENE 107 115846 - 116676 845 276 aa, chain - ## HITS:1 COG:no KEGG:BSUW23_10060 NR:ns ## KEGG: BSUW23_10060 # Name: not_defined # Def: hypothetical protein # Organism: B.subtilis_spizizenii # Pathway: not_defined # 5 270 21 290 295 160 39.0 4e-38 MVWRILLGWLSFVAALGVAVAVTLTAQNYGFPVLAQQIILAVVTSGIAVPLIYLLRRYAD NRPWSGLGLSPLPSGFPYLLLGVGFLSAMMGIALLAGTLAGWIRVVDVHLPAETLLLILI NIPIAFFYEAFPEEVTFRGYLYSNLSVRFTRWLALLFQIILFVLAPVALTAAMVAAGIGT WDLITFDYVVNLLAFGTALQLCRIFIGNLWVCIGFHLAWLEIVRFVIVPSDSALIEVEYL SPYGSYLVSLGSVTIGILVLLYGTYRNRNRQKEIRE >gi|333606354|gb|AFDH01000056.1| GENE 108 117253 - 118818 1652 521 aa, chain + ## HITS:1 COG:BH0916_1 KEGG:ns NR:ns ## COG: BH0916_1 COG3325 # Protein_GI_number: 15613479 # Func_class: G Carbohydrate transport and metabolism # Function: Chitinase # Organism: Bacillus halodurans # 257 520 139 445 450 175 35.0 2e-43 MNWQFIRSQSPKQVLFRVLLIASLLVSLLPFLGLNTQQASAAANVSTAAAACTDAAWDST KVYTGGQKVSYNGKVFEAKWWTQGETPSQTNTWGSWKYVSDCTGGGGTTDTTAPTAPAGL TLTGKTSTSVSLSWNASTDNVGVTGYNVYNGSALATSVTGTTATVTGLAANTAYSFSVKA KDAAGNLSAASNVLAVTTSSDGGGTTPLAKINGAYVASWHFPAVNTVPANKLTHIFYAFA DVANNGVSGGDTSQIAQLVTLKQKNPDLKVLISVGGWGRSDGFTSAASTDANRTAFANSA LQYIRANKLDGIDLDWEYPTTADKQNYTLFLKKLREVLDAGSAADGRTGNKKYEITAATG ASEYGIQGIDLGSVHPYFTFINIMTYDMQVGANTHHTNLYTSSLNSSYSVDNAVKLYKGR GVPSEKIVIGGAFYSHGAGDYTYDELKASYINKNGWTRQWDDVAKAPYLTNGSSMLSYDD AESLTQKVNYLKSNNLGGIMFWEYGQNLGAELVDAIYTALK >gi|333606354|gb|AFDH01000056.1| GENE 109 119024 - 119290 345 88 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_2842 NR:ns ## KEGG: Pjdr2_2842 # Name: not_defined # Def: transcriptional regulator, ArsR family # Organism: Paenibacillus # Pathway: not_defined # 2 87 7 92 93 105 62.0 5e-22 METNQAVKVHRALGEHTRYKIVQILTKESNLCPADLESRLESIALSTLSHHLKQLSDCGL LHSQKKGTYIYYSLNEDTVKKFAPYLIE >gi|333606354|gb|AFDH01000056.1| GENE 110 119453 - 120634 1275 393 aa, chain + ## HITS:1 COG:BS_ybcL KEGG:ns NR:ns ## COG: BS_ybcL COG2814 # Protein_GI_number: 16077257 # Func_class: G Carbohydrate transport and metabolism # Function: Arabinose efflux permease # Organism: Bacillus subtilis # 1 377 1 377 390 413 64.0 1e-115 MFKTWKIYMLALISFLVGTSEYIIAGILDKISASLDISLVAAGQLITVFSLVYGLGTPFL IAWTARWERRKLLIYSLGLFVVANVLAFTLPGFAAFIGARVLMALGAGVVVVTALTVAAK IAPPGKQASAIATVIMGFTASLIVGVPLGRLVAAAYDWKTVFAGIGALGLLAMFVLSVTI PKTEGDAPVPLREQIALLKQPRIFLALSVSFFWLGGYSIAYTYISPYLLTITGMNEKMLS AALLAFGIASLAGSKIGGYSADKWGVYRTLMSGMTLHVITLLLLTLAAHSPVVVFAVLIL WSFAAWSSGPTQQYNLVTMAPESSGIMLSLNNSVMQLSMAAGAGIGGIIVGSVSLNAVTW IGAVGVAAAIAINFVSFKLSVGERRKAENIRHA >gi|333606354|gb|AFDH01000056.1| GENE 111 120813 - 122267 1674 484 aa, chain + ## HITS:1 COG:alr4238_3 KEGG:ns NR:ns ## COG: alr4238_3 COG4222 # Protein_GI_number: 17231730 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Nostoc sp. PCC 7120 # 211 416 3 204 205 112 36.0 1e-24 MKKNWLIAASTALTLVSGTGAAFAADLKGSTADSVTYTNNGQAVAPSVPAVNIDGSLYLP FRAISEATGKYVDWDEFRSRVSLTDKPALTGKYKLNAPDLAKGVKMGIGSSLTHLPGDPD NVFYTTADRGPNGEVDVKGTMVRTFPLADYTPTIYKIEIKDGQINILDQFPLKLNGINPA TGKANISGLPNIKGRDEAPFDAKAEKELAYDPYGLDVEGLAYNPKDDTFWISDEYGPSLV HVKRDGTLIERIVPKGWAAQVSTPLVPARETLPAVYNKLRQNRGAEAVGITPDGRFMFMA MQSPLRSPNKESDNSRQLRIVKFNLQTLEPVAEFAYLAEDAKDFKGLKQADIVISDLVVV DENTLLIDERDKNAGDKAQLKRIYSIDLSNATNILGKYDDTKAAGKTLEQMSPAELKGQG ILPPSKRTLLDLVPFKYPYEKVEGVSLVNGNTLVIVNDNDFGVDSSSPENGTELWTFKLP YTIK >gi|333606354|gb|AFDH01000056.1| GENE 112 122397 - 123842 762 481 aa, chain - ## HITS:1 COG:Cgl1213 KEGG:ns NR:ns ## COG: Cgl1213 COG0477 # Protein_GI_number: 19552463 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Corynebacterium glutamicum # 9 451 20 456 487 158 27.0 3e-38 MNDLIPACTREPDAAPHPDPRRWMALVLILLPTLLISLNNYMMQVALPVMQASVHASFAE AQLIFSGYSLGLAVALILGGKLGDLYGRKRLLRIGVSGFTCMCLLGALVPNPTLLLVIRI IQGLSAAMIQPQVLSIMQSIFLPREKGLVFAIYGAVIGLGFTLGLILGGLLVDWNLFGLS WRIVFLVNVPFGLLVMMGLPIVPESRGHSDPSIDWFGIILVMSGLLLLIYPLTICQKQGW PVWTWGCLLLSLVLLLQFVLQQKRREEAGRAPLMELSMFKIGSFRIGIITEVVVYLSMFS FFFILNYYLQAGLKFDLESTSLVFLPLGLGFFATSLMSAWLVKRWGDAVLKTGTLTMGVS LFMLIWSLHADAVHFFHFQNLLILSVYGLGLGMATTPLANTILNRVPAASGGTGSGLFTT FMYLANALGVAWISILFSAALNSPLAEAGLGDYVRAFSVSTAASGVLAFAACACICRLKE K >gi|333606354|gb|AFDH01000056.1| GENE 113 124037 - 125008 653 323 aa, chain - ## HITS:1 COG:alr2625 KEGG:ns NR:ns ## COG: alr2625 COG2207 # Protein_GI_number: 17230117 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Nostoc sp. PCC 7120 # 28 312 45 332 347 134 32.0 2e-31 MHSLFDQFTDLIQGQSRLRAWEQHITIPHEIGQGSILRTRIRPGMEIAITDLTYAQDMKL RIQEACPLFELSYCLSGDIYCEWGGKESYTNHWTGNVLFFENELVYEEKKAGVRNHMLEI RLSPQELFHYAADLPERQKMESWLQRHKGSIDKYPNTPEIHRCVSDMLNCSYVGAMKRLY MESKAMELIALFGEVEGYEAEIGKQFLNRDDLVKLDQARELVVRHFEQPLSIRELARKVG LNEFKLKKGFRERFGMTVFELVRKQRMEKALYCMEVQRMNVGETAVSVGYSNFSNFAAAF HKMYGYNPSEYLKMLSHRDAKTE >gi|333606354|gb|AFDH01000056.1| GENE 114 125205 - 125645 346 146 aa, chain - ## HITS:1 COG:mlr1825 KEGG:ns NR:ns ## COG: mlr1825 COG1522 # Protein_GI_number: 13471754 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Mesorhizobium loti # 3 138 6 143 160 84 33.0 1e-16 MRETAKPDDTDRKIMNLLHTNARMPVAEIGRHISMTQPAVRERIQKLEEQGIITAYKAKF DPGKLDRGIQAFMLFKTVKCREFVRYCESSPEVAELYRISGEFNYLLKTRSESMESLAAF QDAMMVYGVSNTLIIMHAHVEDKSPF >gi|333606354|gb|AFDH01000056.1| GENE 115 125784 - 126548 213 254 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 4 250 1 238 242 86 30 1e-15 MQNLREKTALVTGASRGIGKAIAKRLAHDGAWVAVHYGRDKKAAERTVAEITESGGKAFS VQADLGSMQGVERLFEQLDTLTIKHTGSTSLDILVNNAGIGTQGSIETTTEKQFDELIAV NIKAPFFIIQKALPRLRTGGRIVNISSAETRIAFPASIAYGLTKGALNTMTLPLAKQLGE RGITVNTILPGYTETDINADILSDPSVRKYAAGMSAFGRLGQVGDIADAAAFLASEDSRW VTAQILDVSGGARL >gi|333606354|gb|AFDH01000056.1| GENE 116 126658 - 127524 696 288 aa, chain - ## HITS:1 COG:MT0862 KEGG:ns NR:ns ## COG: MT0862 COG0596 # Protein_GI_number: 15840254 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Mycobacterium tuberculosis CDC1551 # 5 286 2 281 286 216 40.0 6e-56 MRHTEGYIEVPGGKVWYSSAGEGGGTPLLVLHGGPGNTHDPLKATLHVLGDERPVIFYDQ LGGGNSDRPGDASLWRTERFIEELACVREALGLDEVHILGHSWGTMLAASYLIERKPTGV RSVIFSSPCLSAARWKEDADRFLAELPDEVQAVIARSEEQGTTNSDEYRDAMKDYYKRHV CRIDPLPAVVLESRGKANKDIYMSMWGPSEFCPTGSLKTYDVTPRLHEINVPSLFLCGRY DEAAPESTFYYHSLVPQSDFQVLENSSHAGYLEEPEEYVRIVRGFLTS >gi|333606354|gb|AFDH01000056.1| GENE 117 127579 - 128778 1266 399 aa, chain - ## HITS:1 COG:BS_blt KEGG:ns NR:ns ## COG: BS_blt COG0477 # Protein_GI_number: 16079712 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus subtilis # 12 387 13 387 400 320 49.0 3e-87 MDLLLKNRGAVLLLMLNIFLVFTGIGLVIPIMPTYMDELHLNGSIMGFLVAAFSLTQLIF SPLAGRFSDSLGRKKMIVAGMVIFTVSELLFGVVSSPVLLFASRMLGGIGAALIMPSIMA YIADVTTTAERAKGMGFINAAITTGFIIGPGIGGFIAEFGIRAPFYAAAAVGAVAAVVTL FILPESKPVEPPVKAGAAPSQKQSFMAQMLSSFREPYFISLVIVFVMSFGLANYETVFGL FVDHKFGFTPKDIAFIITFGSISGAVVQVTIFGWILNRFGERTVISVCLAMAGLFVLLTL FVHQYWMIVVVTFIVFLSIDILRPAIGTQMSKMANEHQGYVAGLNSAYTSLGNITGPIVA GVLFDRNLNYPYVSAALILFLCFALSLRAGRRGSASGIS >gi|333606354|gb|AFDH01000056.1| GENE 118 128928 - 129527 540 199 aa, chain - ## HITS:1 COG:SMc02844 KEGG:ns NR:ns ## COG: SMc02844 COG1309 # Protein_GI_number: 15963922 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Sinorhizobium meliloti # 7 68 13 74 197 60 45.0 1e-09 MNKKQLQSEQTKKRVADAARTLFVQKGYKATSIEDIVEATGSSKGNIYYHFKSKEGLFLY LVDEWEREWEEKWMEKEPLYKTTTEKLLGMAQQMVIEDLNHPLTQAADEFFNNEEKTNDV EERIAELVNRHLKFNQALIQQGMDSGEFKGADVEPLAVILESLIMGLSQMSRKSSTAEAL KLYRLAFGVFLHGVAKPSG >gi|333606354|gb|AFDH01000056.1| GENE 119 129766 - 131643 1616 625 aa, chain - ## HITS:1 COG:no KEGG:SCO3496 NR:ns ## KEGG: SCO3496 # Name: SCE65.32c # Def: lyase precursor # Organism: S.coelicolor # Pathway: not_defined # 167 625 53 493 493 303 45.0 1e-80 MNAGNRTFSLILSLCLLLMLIPAQGYAANTKLSVPASAVTASTHDGNLPANTVDGNLSTR WSANGNGEWIRFDLGSLRKVAYIKVAFLTGDTRTSTFDIQTSADNVTYTNVKTNVTSSLN AQLQTFDFADVSSVRYVKLVGHGNSVNLWNSYTEVEIYGEDDNQGGIPVSTSEGLAAALK TASAGQTIVLADGNYTVSGNNPSILIENRNGTEANPITIKAANRGKAVITGSTTFEVKNS SYVTIEGLKFANSADKGVLLNGSHHIRLTRNQFALPARGVATIWLQVSGANSHHNQIDRN DFGNKTDTNPLIAYEGDGQGNISQHDVIEYNYFHDVGPWVANGKETIRLGLSKISLSDGF NKIQYNLFENTDGEPEIVSVKSSNNTVRYNTFKTSKGGLTSRHGHSNSFYGNFFLGDGVE SEQAGIRIYGNDHKIYNNYMENLTNSAIILDNGNYDGGAGGYPSNPSEDDLKAQWRIYRA QVVNNTIVNSTTGIVVGSGKAFTPVDSRVANNIVKNSSGILYNEAATTNTVFEGNIGYGG TVTNKGRTSAEIWNKNPLLTAVQGLQKLSASSPAINYAKGSYPFVQEDMDGEIRSVNDAG ADERSSASSFTNHPLTQAEVGPDAP >gi|333606354|gb|AFDH01000056.1| GENE 120 131818 - 132468 578 216 aa, chain - ## HITS:1 COG:lin0495 KEGG:ns NR:ns ## COG: lin0495 COG2755 # Protein_GI_number: 16799570 # Func_class: E Amino acid transport and metabolism # Function: Lysophospholipase L1 and related esterases # Organism: Listeria innocua # 15 212 4 197 197 203 53.0 2e-52 MTEHKDRTIGRGELLLFQGDSITDTGRNRENHADLGKGYVQMIAGLFGAACPGSRVTFLN KGISGNRVKDLQNRWQQDCIDLKPDWVTIYIGINDCWRRYDRNDPTSLETFAAGYRQLLT RTTEETGARIVLMEPFVLPVPEDRKAWREDLDPKIRVVRELAREFGARLVPLDGLFARAS TEAPASYWAPDGVHPSAAGHGLIARAWLDTMKVKLF >gi|333606354|gb|AFDH01000056.1| GENE 121 132465 - 134732 1660 755 aa, chain - ## HITS:1 COG:no KEGG:Phep_1707 NR:ns ## KEGG: Phep_1707 # Name: not_defined # Def: hypothetical protein # Organism: P.heparinus # Pathway: not_defined # 13 725 28 741 750 526 39.0 1e-147 MKQSVTDRPRLDLDWRAFMAEHDMEWVVKPTSWDEGAFIGNGTIGAMVYGAENAKKRRTL RFVMGRTDVTATRTDRDDFKPRVPIGEMNLELAGLIYNPTRLRVDLWNAELRGSLTTTCG EVRIRALVHAEEAVMAIELETSEEEKEARLEWVPHSEVDDVLKFADGVNVNQYIPLAEHE TSREDGMTFAIQRFAGGEECGEGCVTAWTVTQLPEGRRVAFVSIQNGCTQEARKNAAEAV RKAASGDFGEWVSAHRRWWHDYYRQSFLSIPDRRLESFYWIQMYKLASAARADSVLLDNQ GPWLAPTPWAANWFNMNVQMSYSPVYASNRLAIGESLVKAVADNSEHLRENVPQPYRHDS AGLGRSGSFDLRSEVGEEIGNLAWLCHCLWRQYRYSMDDGLLRDVLYPVLRGSVNYYLHL LHAGEDGKLHLPPTISPEYGSFKRLTVSDCHYDLALLRWGCETLLAADARLGSGDPLAGR WREALDNLTPLPVDVSGYMVGRGVPLAFGHRHFSHLLAAFPLHLASPDREEERELIARSL RHWLDSEGDLRGFSFAGAASIAATLGWGDEALRLLHTLLGLIKPNTMYKEAGPVIETPLA GAESLHDMLLQSWGGTIRVFPAVPEEWREAAFHDLRAEGAFLVSAVRRAGATSFVRVKSL AGEPCEIRTGWTGTVHWRLAGEVARHVVQVADSRESVMLPLKQGEEAILYPAGEEPELRI GPVEAKTGPVRYFGGSKTWRLYGFPFRNLLEEDRT >gi|333606354|gb|AFDH01000056.1| GENE 122 134745 - 135620 1213 291 aa, chain - ## HITS:1 COG:BH0481 KEGG:ns NR:ns ## COG: BH0481 COG0395 # Protein_GI_number: 15613044 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Bacillus halodurans # 4 291 5 293 293 233 46.0 3e-61 MNRRTFSERAFDGFNLLFLTLLMIVTIYPLVYVVFASLSDAGGLLAHKGFLWKPVGFSLD AYANVFRNPMILKGYANTFFVVFLGLAFNILLTSLGAYALSRKSLAYRKRIMLFIVFTMF FSGGLIPFYLTVKGVGLANTLWALIIPTAVNTFNLILMKTAFEGIPDALEESAKIDGAND FVILFRIVLPLSLPVLAVMLLYYGVGHWNAWFNALIFLQERSMFPLQLILREILLQGEAN ANLGASEGDVAMLTVTLKYATIIVATVPILLVYPFLQKYFVKGALIGAIKG >gi|333606354|gb|AFDH01000056.1| GENE 123 135639 - 136595 942 318 aa, chain - ## HITS:1 COG:AGl3564 KEGG:ns NR:ns ## COG: AGl3564 COG4209 # Protein_GI_number: 15891904 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type polysaccharide transport system, permease component # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 25 318 15 309 309 288 49.0 7e-78 MAAINQEALPYPAAKKQARTGLLLDIRKNKLLYVMLLPVLLYYAVFHYAPMYGAIIAFKD FSPRLGIWGSEWVGFAHFESFFSGAYFWRTIKNTILISLNELVFGFPAPIILALLLNEVR NSVFKRTVQTVTYMPYFISLVVICGIIKDFTASSGVINDIIAFFGGERLTLLLEPEWFRT IYVSSGIWQHIGWGTIIYLAALTGIDQEQYEAAKMDGAGRWKQMLNVTLPGLMPTIIILL ILELGRMMNVGFEKIILLYNPSTFDTADVVSSYVYRVGLQEFNYSFSSAVGLFNSAVNFT LLLSSNWISRKLNSTSLW >gi|333606354|gb|AFDH01000056.1| GENE 124 136691 - 138316 1747 541 aa, chain - ## HITS:1 COG:AGl3560 KEGG:ns NR:ns ## COG: AGl3560 COG1653 # Protein_GI_number: 15891902 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 97 540 75 519 522 155 28.0 2e-37 MVRHSGRRNSRSGIIVILAASVMLAACSAGGRGGKEEKQSAVDSEPGKYPVRAEETLTSW EPMDTNLSAFVTNLADSPFGKQLEKETGIKVKYTHPADGQSKDQFNLLIASNNLPDVIEY NWSGGSGSYPGGPEKAIADKVIIPLNSYIDKYAPNLKKLLEKDKELDKMIKTDSGNYYVF PMIRPENGLVFRGPMIRKDWLDELKLDVPVTIDDWYTVLKAFKERKGAASPFSALYQNEF NIQDAFIGAYKTANRYYIDDQGKVRYGPVDPQFKEALTLLRKWYAEGLIDKDFALNTDSK SLDTKMLNDSTGATVHLLSGGMGRWMDTGKKKNPNFQLVAAPYPTLTKGERPFIGQRDFK YNPAASKAVSDASKNPELAVRWLDYAYGEKGSLLFNFGTEGDSYTLNNGTPAFTDKIAKD GKYTLQQMISQYTKPNGPYLGDSRKNFNTFKQQHEAQKIWSETDAAKHVMPQFITPTVEE SKEIAKLNTAITSYKEEMFIKFVMGKEPLDKFDEYVKRIKEMGIDKVTKIYQDAFDRYNK R >gi|333606354|gb|AFDH01000056.1| GENE 125 138522 - 140906 2277 794 aa, chain - ## HITS:1 COG:BS_yesS KEGG:ns NR:ns ## COG: BS_yesS COG2207 # Protein_GI_number: 16077768 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Bacillus subtilis # 33 793 20 756 761 124 21.0 1e-27 MFPVLLFGIMFNKAFTLQGGGGVYSLKRIRFNRRSVIVTWLISYITVLLVPVLINGVIYM VTWNVVETEVNRSNEAVIKQMEQAIDNHLKGIERLSVEMALNKRLAGFIHAGSPLTDNDH YELIGIAGDLGVYKVANDFIDQIYIYYKNSDTVISSRERTDSRALYETLRENEDTGYDEW KSFFDKRFIQEYAPVTLTENGSKTGAVLYAKSVILDNPDLPGGVILFVIKESKLLANLAP VHNASVAVLDQKNRLLASSGTGPKTDYPAYGELSGKSGLVYKESAGRNLAVSYTTSEQTG WKYVSMMPAEIFDEKMKHMSVLIFVNLFLSLLIGGVLTFLFLKKNYSPIHVLIRNLSTKS GLAFEEGSNEYGFVQNALNNAFAEKENVSRRLMQHRDAIRSHFLQGLLKGRLDPNVPVHE SLAAHDIGFPHEHYAVLLFRIDQFGKWDEPGGGDAKKIRQIHFLLMNVAEEAAAAGSCSA VTAGIDDMQACILNISPEADEQEIRRLARQVKAFLSDHFQVRLTIAISGVHAGLAGVPLA YQEALAAMEYRIVMGSGEVIAYGDLPGGDEFGEAAFYSYPMHVEQQLINFVKAGDFEQAN ALVEQVIERNVVQKTLSVPLSRCLLFDLVGTLLKALDEIGLPGKRELIRELNPAERLAGS ETLQEMTAGMREVLSRVCGFIQESRKPEHDQLSRQVTEYVRQNYSSENLNISMIGEAFGL TPSYLSKQFKAQTGEALLDVIQKVRLAEAKKLLSQSSDPIIEIARKVGYSDINTFNRIFK KFEGVTPGKYKEIL >gi|333606354|gb|AFDH01000056.1| GENE 126 141028 - 142065 942 345 aa, chain - ## HITS:1 COG:no KEGG:PSHAb0020 NR:ns ## KEGG: PSHAb0020 # Name: not_defined # Def: hypothetical protein # Organism: P.haloplanktis # Pathway: not_defined # 1 201 1 203 290 182 49.0 2e-44 MWFMYASLAAVSFGLRGILYQWTSQRRTDRNVLLFGVYLSGALISLVVNLFVNQAWSHGV WFGVPMGLFSFIANASMYKGYSVGRASLIALFTGLPPVVVATLAFFLWGESLGLVQLAGF CIVILGLLVIRYSHDLKLGQLQGIQWGLLTMLFFGFTDLSSKQATLSAANTLPVLTVMYG TGTILFACMYLLSRLKVPAKTGQQITAVGSPHESLHDRETGYGPDAQHARISRHSGGDKS LPGSEDGRRTHPATGGADNPASPAWSMKRTVLWGMTVGITNLAGMLFIIPAFRGGVTGIV SAISAMNVVLVLLYAQFYLKENISVREACGMLLALAGILVVRLAS >gi|333606354|gb|AFDH01000056.1| GENE 127 142568 - 143281 680 237 aa, chain + ## HITS:1 COG:mlr1862 KEGG:ns NR:ns ## COG: mlr1862 COG3826 # Protein_GI_number: 13471778 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Mesorhizobium loti # 8 236 18 246 247 229 45.0 3e-60 MPDNIAERIAGLDWDSIRESLDENGYAKLPPMLESSQCEELIGGYGEERLYRSTINMARY RFGLGEYKYYRAPLPDVIQEMREAFYPPLADIANSWLKRLNQEALYPDSLTGFLEQCRRE DQTRPTPLILKYEAGGYNCLHQDVYGSVFFPFQVVFALNQKEQDYTGGEFLLVEQRPRAQ SRGHVLTLERGGGLIFPTTHRPVSGSRGDYKTTLRHGVSTVTTGTRYSLGLVFHDAE >gi|333606354|gb|AFDH01000056.1| GENE 128 143445 - 143981 212 178 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|125718620|ref|YP_001035753.1| ribosomal protein N-acetylase [Streptococcus sanguinis SK36] # 1 160 6 166 187 86 35 2e-15 MKDKLETERLLLRTMTEEDALRLFEVWSSPDVTKFMNIEPFTEIKQAADMIAFLNGLALE NKAVRYAVIEKESGAIIGSCGFNELDFGQRRVEIGYDLDPAYWGKGYAPEAIGCLLAYAF GELGMSLIKAKVEPENVNSIKVLRKLRFTFAGTLSSGEDADSGPSSPPLNLYTKSRED >gi|333606354|gb|AFDH01000056.1| GENE 129 144124 - 146283 2279 719 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_1769 NR:ns ## KEGG: Pjdr2_1769 # Name: not_defined # Def: coagulation factor 5/8 type domain protein # Organism: Paenibacillus # Pathway: not_defined # 12 558 5 574 710 358 42.0 6e-97 MQKISSRISAWTAAVLFLSLFVNAFYGVKPAHAAGTAYYVDSAAGNDANSGVSQAQAWKT LAKVNATTFQPGDRILFKSGGVWNGQLWPKGSGTDGSPIVIDKYGTGSKPVINGGGSNFN QTVYNSSKTYNTGTVLLRNQEYWEINNLEVTNDDNFSVENNDSAALRAGIFVVIDANESD RVYNHIYIRNNDVHDVDGSNNAGAKENGGIIAVIQGTAATSTRTYARFNDIRIENNSIRK VDRVGIRAAAHSNYVNDDSFSTTSTRTYGNWNTNVYIGHNNLEDVGGDSIILRDTDGALV EYNVANRFGTRVASTNAIAAIWLAVAKNTVLQYNEAFGGPASNQDGCAWDFDLYLENTTY QYNYSHDNPMGHVLMMGTNKNDVMRYHISQNEGNIIRHFNANEATPASIYNNVFYYNGAS HKVIGGNDATKTGYQFTNNIFYNANPSVTTNWGTAANWGQTSFSNNIFYEASGTHSGNEP VDPAKRTADPSFVNPGGAGTGLTTAAAYRLKAGSPALNAGKLIADNGGKDYFGGAVSAAA APNIGAYNGAGVPVTPPAGVKAPTADAYVLDGSGAGVNYGTAPTLYVKDGTAAGYTRKAY LKFDVSGLTAVTSAKLRLFGGNTQDASNVQVKVSGAAADGWTETGLTWNNAPAATTGALS TIQVGGTLTYYELDVTSFVKDQLSDGIVTLIVEGVSDQDRTIQFNSRENPANKPELVVN >gi|333606354|gb|AFDH01000056.1| GENE 130 146391 - 147407 850 338 aa, chain - ## HITS:1 COG:no KEGG:Cthe_3165 NR:ns ## KEGG: Cthe_3165 # Name: not_defined # Def: PpiC-type peptidyl-prolyl cis-trans isomerase # Organism: C.thermocellum # Pathway: not_defined # 2 300 21 347 382 105 25.0 3e-21 MGTKRKPVMKPDGKKNRIARIIVVSALIVTAAAAAAGFARYKSSSVTEYTAVASIGNEPI QYGEFTLVRDMLRSTAKPEELNAKTLQRVKEFKTEQLWAKEKGLAAGGLGFGDFEKRWRQ ENARRKAAADHGEPVYGPVSYDPAGYYRYEQSNLQLRLKEALAGQDFAAGDAELQAAYER LKDDRFMRPSKIRLQLLSAENSASGAEKLNRAAARLKAGEAFESQAGQADSGLTAQARWF EPEDRKADAERYPALLQEAEGLQPGQTSGVIGEGERLYIIRCAEREKAEYEPFEDVKERV RILYTDERYAAELASRLSRTELIVLKPLESEGEAGVMK >gi|333606354|gb|AFDH01000056.1| GENE 131 147664 - 148215 525 183 aa, chain + ## HITS:1 COG:no KEGG:Aflv_2323 NR:ns ## KEGG: Aflv_2323 # Name: not_defined # Def: hypothetical protein # Organism: A.flavithermus # Pathway: not_defined # 2 181 11 178 178 123 44.0 4e-27 MKTRKYHLWVGLIASIFIFVEALTGILLVHTSTMGFNKQVQTYEAPAASNSGQQTLNVAE AVLKASQSGAFDLSEARLVMNHTLGDGHHGQAGDYKVRLRDDDQTLYVIDLYGNVIRKEV NATNNFVRDLHFGELYGKDITWFVDIAAISIMFLTATGIVLSIRVLKAGSIRKSKRKKAE AAG >gi|333606354|gb|AFDH01000056.1| GENE 132 148240 - 149343 484 367 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148988856|ref|ZP_01820271.1| 50S ribosomal protein L9 [Streptococcus pneumoniae SP6-BS73] # 1 303 3 301 308 191 36 4e-47 IMSTILDTIGNSPLIRLNRLVESADSEIYLKMERTNPGGSIKDRPALYIIEEAERRGWLK PGGTLIESSSGNFGISLAMIGAAKGYRVIVLVDPKTTPVNLAMMKAYGAEVIVVTEQDDS GSYHKTRIALANKLHREIPGSFRPDQCFNPWNGEAHYVQTAKELMDQSGHRIDAVIVTVS TGGQIGGLSRYIKEYAPHVKVIAVDAVGSTIFGGKAHAYLLPGMGLSWTPTNVDDLQRID EVYKVPDEDAFLMCRVLAKYEGILGGGSTGAGMVAAWKLAQLMGRGKRIVCVASDNGERY LPTIYNDDWLQERGILTDIGLQEMKVRVRELPPYSRNPAETANYKPELAEQLDSPSRLIS RELFRHG >gi|333606354|gb|AFDH01000056.1| GENE 133 149336 - 150547 1039 403 aa, chain + ## HITS:1 COG:BH2079 KEGG:ns NR:ns ## COG: BH2079 COG0477 # Protein_GI_number: 15614642 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus halodurans # 28 380 29 383 392 176 35.0 9e-44 MDNPYSFRSLQVYAVTILFYCIVYMVLMILPFYAITAGAGEMEIGLIMGTTMFASMICRP IAGTVIDRYGTRKVFVLALLLFTVSLAGYFIPNLWLFGLVRAVQGIVAAFFSTAMEIITM DLLSEKMRAQGLSLYSLATMIPSTFGPTIALLLKDWLPMIWIFGSLFMMSTGIFLFGLSL SRQMKSSAAAPPAEIPDDPAASPLSRKGVWKSRTLLLSSAVMLLASVANGAIFTFLPLYL EKQGLKFAELYFLIQTLVLVLTRFAGRKYIPSDGSFPGRILFPALALASLGSLILGTSLS PSALAAAAVFNGIAFALLYPALLTYVSFSVPHFARGLLIGLFIGAADLGFSLGALAMGPV ASSFSFPVMFITGGALCLLAGFAGLGFRARQTENGKKRTAAGL >gi|333606354|gb|AFDH01000056.1| GENE 134 150653 - 152254 1464 533 aa, chain + ## HITS:1 COG:lin0483 KEGG:ns NR:ns ## COG: lin0483 COG4716 # Protein_GI_number: 16799558 # Func_class: S Function unknown # Function: Myosin-crossreactive antigen # Organism: Listeria innocua # 3 533 41 566 566 552 52.0 1e-157 MRVNTRKETNNHAYFIGGGIASLAGAVFLIRDGGWAGERIHILEDRPVNGGSLDGSGDER QGYVIRGGRMLNEPTYECTWELLDSIPSIDSPGKSVKDDIYAFTEKYPTHAQARLVDKDR NIVDVEHMLFSNKDRLDIGKLLVTSEEQLGKQKINEWFEPEFFETNFWFMWATMFAFQPW HSLVEFKRYMIRFMHEFPRIHTLAGVARTPYNQFDSIVLPIQRWLESQGVRYERKTRVTD LDFKPDPTGKSPVVAGRIQVVKDGNTGSIEVNPDDLVFFTNGSMTESSDLGSMTSPPKLG GKGPSFGLWEKIAAKLPGSGNPSAFDDHIPESKWASFTVTCKDPMFFDFMENFSGNKAGT GALVTFKDSNWLMSVVLAHQPHFRNQPEDVQVFWGYGLFPDKPGDFVPKKMSECTGEDIL TELLSHLKLSEKLPEMLESSICIPCMMPFITSQFMPREEGDRPQVVPDGSGNFAFIGQYT EIPDDVVFTVEYSVRTAQTAVYTLLDIDKKIPGMYHGNRHAKVLFDSLVTMVK >gi|333606354|gb|AFDH01000056.1| GENE 135 152306 - 153046 213 246 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 1 242 1 238 242 86 27 1e-15 MRGKVAIITGSSRGIGAAAAKLLAGRGAKVIVNYASNASAAEDVVASIRENGGEAAALQA DARNAEQMNGLVSETVSRFGTVDILVHNAGMNFVQKSFEDMSWEEFIQKTNDELQAAFVS TKAVLPFMKKQKSGKLVYVSSGLSNHSAPLFISHGTSKGALNSFARYIAREFGGAGITAN IVSPGMVETDATASIPEAFKQQQAAYLPLGRIGRPEDIARAIAFYASEDSSYLTGTYLSV SGGGEM >gi|333606354|gb|AFDH01000056.1| GENE 136 153347 - 154429 661 360 aa, chain + ## HITS:1 COG:no KEGG:Bsph_2053 NR:ns ## KEGG: Bsph_2053 # Name: not_defined # Def: hypothetical protein # Organism: L.sphaericus # Pathway: not_defined # 239 357 22 140 1031 122 47.0 3e-26 MLKNRKWISAGFGLLILAAALPVHAGAESKEPAPHALTLEQVAKEIRQKAPGPVYVEWKE IRHFDGGKSSIVWYKSWEDAPNARYRLETSYDMAEKTLNTLLVNGDDGLSYMAEGNKTSK IKLNGMEFNSYSKLSKMRLETFLTDTEDPAYQGEETILGRQAYHLSGKSKKTVLKFTDQA GDEISTPVVTPAREQWFDTETGMLLKEQAAKPSESGFETVVSAIKVSPEITPDVFDFESI TKKSDEIQVTIDGQTQRFAQPPVIVEGNTLVPLRAIFEKLGANIIWNEKEQSVTAQKGGT TIYLKIGTKSATVNGASKVLEVPAQLVNEHTMVPVRFISEALGAVVKWEPSSQTVVITNP >gi|333606354|gb|AFDH01000056.1| GENE 137 154539 - 155324 506 261 aa, chain - ## HITS:1 COG:BH0895 KEGG:ns NR:ns ## COG: BH0895 COG0726 # Protein_GI_number: 15613458 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted xylanase/chitin deacetylase # Organism: Bacillus halodurans # 6 255 5 254 264 296 53.0 2e-80 MKRVTIVFALLTILITVFPLDTLAADGGNKTYHFGFKKSKQGKPASIDEEGFKSILEKHD AVFLGDTGKKELYLTFDNGYENGCTPKILDVLKAKQVPAAFFVTGHFVEDKPELVKRMTS EGHLIGNHSWSHPDMSRISDEKIKTELDRVKNAVVNLTGVQTMSFMRPPRGIFSDRVLEV SKQHGYTNVFWSVAYKDWDVKDQKGWKYAYDKVIAQLHPGAVILLHSISKDNTDALDKII DEAKKQGYEFKSLENLNQKTE >gi|333606354|gb|AFDH01000056.1| GENE 138 155490 - 156326 750 278 aa, chain - ## HITS:1 COG:BMEI0525 KEGG:ns NR:ns ## COG: BMEI0525 COG2321 # Protein_GI_number: 17986808 # Func_class: R General function prediction only # Function: Predicted metalloprotease # Organism: Brucella melitensis # 1 276 1 305 308 289 50.0 5e-78 MKWQGRRGSSNVEDRRGVGGKTLVGGGIGGIIIVLLMTLLGGNPGDLLSDLTGAGSGSNA PYEETQQEKELSQFVSVVLADTEDVWTTQFKERGLVYEKPTLVLYTDRVQSACGTAGSST GPFYCPGDRKLYIDLSFYNELKQEFKAPGDFAMAYVIAHEVGHHVQTLLGTSDKIMPLRQ KMSEAEFNKYLVRFELQADYFAGVWAHHAKGMDVLEEGELEEALTAASAVGDDTIQKRAR GYVVPESFTHGTSEQRKSWFSKGYQSGRIEDGDTFSSK >gi|333606354|gb|AFDH01000056.1| GENE 139 156533 - 156949 427 138 aa, chain - ## HITS:1 COG:BH3119 KEGG:ns NR:ns ## COG: BH3119 COG3607 # Protein_GI_number: 15615681 # Func_class: R General function prediction only # Function: Predicted lactoylglutathione lyase # Organism: Bacillus halodurans # 1 132 1 132 134 174 59.0 4e-44 MATKADKIFVNLPVKNLDKSVQFFTALGFEFNAQFTDENATCMVVSDSIFVMLLVEDFFK TFTNKEIADTGKSAEVIVALSADSKEQVDEIVNKALEAGGSPMNDKVDHGFMYTWSFRDI DGHHWEFIYMDESAVAQG >gi|333606354|gb|AFDH01000056.1| GENE 140 157189 - 157893 203 234 aa, chain + ## HITS:1 COG:BS_adaA KEGG:ns NR:ns ## COG: BS_adaA COG2169 # Protein_GI_number: 16077249 # Func_class: F Nucleotide transport and metabolism # Function: Adenosine deaminase # Organism: Bacillus subtilis # 17 196 27 206 211 228 55.0 8e-60 MSERFWKAAKLDSPSADKWQAIISNDSSYDGIFFYGVKTTGIFCRPSCKSKEPKRENTCI FQDAEQALQAQFRPCKRCKPTGRRLPEDDWIEQIAHYADNHYKQPLTLRTFSEICHGSPY HLQRTFKRIKGMTPLEYLQHIRIENAKNLLGNSQLSVSDIGSKVGIPNTSYFITLFKKKT GYTPAGYRQSQSLSRTIESGVPSAETNATHHFKSSRKQSEEWSDHEIGIPVYNA >gi|333606354|gb|AFDH01000056.1| GENE 141 157862 - 158680 324 272 aa, chain + ## HITS:1 COG:BH2218 KEGG:ns NR:ns ## COG: BH2218 COG1533 # Protein_GI_number: 15614781 # Func_class: L Replication, recombination and repair # Function: DNA repair photolyase # Organism: Bacillus halodurans # 3 272 1 270 270 313 54.0 3e-85 MKLEYRYTMPKTLLNKGTGFLAGYTHSLNPYTGCSFGCSYCYVRKMPVSTFRGAEWGTWV DVKKEAAELFRKELRRAKSKGPVTLFMSSSTDPYQPIEYKEEVTRSLLEVMTEDPPDFVL LQTRSPLVERDTDLLLQLKNRVRVSMTVETDLDEIRKRFSPAAPPIQARLKTLKALKAAG VPAQAAIAPLLPSSEAFPDLLKSVVNRVCVDDYFMGDGSGGRRTRSLNMETVYKELGLED WYHPHAYQRMVERLKKVFTENQIFISQKGFEP >gi|333606354|gb|AFDH01000056.1| GENE 142 158832 - 159251 410 139 aa, chain - ## HITS:1 COG:PA1353 KEGG:ns NR:ns ## COG: PA1353 COG2764 # Protein_GI_number: 15596550 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Pseudomonas aeruginosa # 8 131 8 134 137 72 32.0 2e-13 MAKHTTYIFSEDARAQAEFYIQALGGEITSVTTYGEVPGAKEEELKDKVINLSLVAAGVT FLMSDSMFEALIPGNVLSLCLEFATEEEAHSAFNNLSKDGKVNQPLEPAFWGALFGQLED KYGITWMITSDTSACRETQ >gi|333606354|gb|AFDH01000056.1| GENE 143 159360 - 160154 578 264 aa, chain - ## HITS:1 COG:BH0851 KEGG:ns NR:ns ## COG: BH0851 COG2207 # Protein_GI_number: 15613414 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Bacillus halodurans # 1 256 1 256 261 298 60.0 6e-81 MTDRYSEIDEVILYIQRNIYEPLSLNQLASYAAYSPYHFTRLFKEKIGLTPQYYVSSLRL QKAKDLLLRTNLSIRDIGLEIGQQSLGTFTTRFTEKVGMTPSEFRNSTFLADSHFHSLKK LDDWSTPETAALPFGNIEGIVQAAIPFEGVILIGLFAKPIPEGLPLYGTLLSSLGSFCIP RVKPGTYYLMATSVSWGTKAVDFLLTEATLRTRSREPIVVEPGIPVPQQLVTLHVPRYDD PPILISLPVLMNNFLRRASSPGST >gi|333606354|gb|AFDH01000056.1| GENE 144 160332 - 161888 1611 518 aa, chain - ## HITS:1 COG:BS_yfmM KEGG:ns NR:ns ## COG: BS_yfmM COG0488 # Protein_GI_number: 16077809 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Bacillus subtilis # 1 518 1 518 518 855 81.0 0 MSILNVERLSHGFGDRAIFNDVSFRLLKGEHIGLIGANGEGKSTFMNIITGKLQPDDGKV EWSKRMRVGYLDQHAVLSKGMTIRDVLKGAFQYLFDMEQEMNGMYEKMADVTPEELEQLL EDVGTIQDTLTNQDFYMIDAKIEETARGLGLTDIGLDKDVNDLSGGQRTKVLLAKLLLEK PDILLLDEPTNYLDEQHIEWLKRYLQEYENAFILISHDIPFLNSVINLIYHMENQELNRY VGDYDHFKQVYEMKKQQLESAYKRQQQEIADLKDFVARNKASVATRNMAMSRQKKLDKMD VIELAKEKPKPQFNFKEGRTPGKLIFETKDLVIGYEEPLSRPLNLRMERGQKIALVGANG IGKTTLLRSILGEIPALSGSVQLGENLSIGYFEQEMKEANYNTCIEEIWKEFPSYTQFEV RAALAKCGLTTKHIESKITVLSGGEKAKVRLCKLINNETNLLVFDEPTNHLDVDAKEELA RALKAYKGSILLISHEPEFYREVVTETWNCESWTTKVF >gi|333606354|gb|AFDH01000056.1| GENE 145 162250 - 163614 1226 454 aa, chain + ## HITS:1 COG:no KEGG:PPE_03267 NR:ns ## KEGG: PPE_03267 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 107 451 115 487 489 122 29.0 3e-26 MLKKWFLSLAIAGSALLSGLAGQAEASASVLPAATPPVVKGGELTSPTDFKSQRDALPES RKPLEAPLSLDKAARGQGLTVNVNAALNNNPNNAAQVVTGAVYADKITEAGGQRWYVFQT NAPGKLTAYLQTIPSASIDYDLHLFRYDPATSSLVEQETSSYGPQSNEQISRIAPAGIYF LAVSAYTGFDANTSYYFTVVESASYDTAEPDDNIWHAQQKTDSFTVSGQTIDNSLDADWI KYTVTAAKSFHIKLANSAPGTTYQLQIFNQNLGSLGTVDQNKDVDGSLTPGTYYLRVVSL NSYNASVPYSLTFSEYKVPTSVDIVSIKSEPNVDAGQRINYGEGNKWRIQNYMTVTGLAK DASGAPAFNAPITVYIQTKLNNKIYSGTGTTSSNGTFSVTINGIQPAIGQNLFYGYASTH YYDIIPLLVYSGGTQLNANDNSLYHFAYSIYSPH >gi|333606354|gb|AFDH01000056.1| GENE 146 163668 - 163997 385 109 aa, chain - ## HITS:1 COG:no KEGG:BCAH820_3076 NR:ns ## KEGG: BCAH820_3076 # Name: not_defined # Def: hypothetical protein # Organism: B.cereus_AH820 # Pathway: not_defined # 9 109 5 104 104 130 69.0 3e-29 MNERPTNTDFEAIYENYKQQGELQAVQEQTEAAASDGLESIVAVRKNEDGDIIAVKTSSG RELDYVSALNEAKSGALAHVDVFHRYGRDILRSEPDGVKSNNLDQLPPF >gi|333606354|gb|AFDH01000056.1| GENE 147 164112 - 164483 107 123 aa, chain + ## HITS:1 COG:no KEGG:Bsel_0967 NR:ns ## KEGG: Bsel_0967 # Name: not_defined # Def: hypothetical protein # Organism: B.selenitireducens # Pathway: not_defined # 1 116 206 321 361 154 63.0 2e-36 MCNDQVCVLVARDRQKMTYSGVLGRGRIKTTKLDKAIGGHLSDSNVLCTDSWRAFSSYAN TKGLAHYRFKSDGKQRVKGVYHIQNVNSYHSRLKKWMDRFNGVATKYSQHYLAWFRFFRQ QGI >gi|333606354|gb|AFDH01000056.1| GENE 148 164678 - 165556 360 292 aa, chain + ## HITS:1 COG:lin0782 KEGG:ns NR:ns ## COG: lin0782 COG0384 # Protein_GI_number: 16799856 # Func_class: R General function prediction only # Function: Predicted epimerase, PhzC/PhzF homolog # Organism: Listeria innocua # 1 292 1 281 282 246 47.0 5e-65 MNVEVYTLNAFAKGERGGNPAGVVLEDGLSLDAAEMQLIAKELGLSETAFMKKSLLADYK IRYFTPASEVDLCGHATIAAFGLMHSLGLSKEGTSYSIETKAGILDVDISSEGLVYLSQA LPQFLERISCEEIAPSLGMDAEDLETGLPIQIVSTGLRDIMIPIRSRKLLNEVQPNFDAI TAISEKYDVVGYHLFTMDTPDDAAAECRNFAPLYDIPEESATGTSNGALLSYLYQHGQRS LREVENVMFRQGYSMDCPSEIKAGLRLSESGEINQVRVGGAVAGIERRHIMI >gi|333606354|gb|AFDH01000056.1| GENE 149 165961 - 166923 731 320 aa, chain - ## HITS:1 COG:AGc3984 KEGG:ns NR:ns ## COG: AGc3984 COG0451 # Protein_GI_number: 15889470 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 4 314 45 351 373 135 30.0 1e-31 MKKAVVLGATGGVGTTLTEELVQRGIETVAFGRSAAKLEKLKLELGNPPHLKLVKGDAFE SADIIKAAEGPDVLFHSANIPYHEMESRLLPLGEAVMKAAEHLAIKVVVVDGIYPYGRRT GAAKAEEDHPKQPHTRKGKVRLAYEQMIFASRWKRAKPLIVRLPDYYGPSAQASYLSVTM EAIAAGKPTIFIGNMTVPREYVYLPDASRMIVEIAGRDGTEGQNWHIPGPGLLSGKELVQ LAQRASGKRKAVYPLRRMSLSLAGLFNPVMKEVVEMLYLTEEPFVLSGRKYEKEIGPIIW TPHEKAVSDTIHALMNKKKA >gi|333606354|gb|AFDH01000056.1| GENE 150 166994 - 167515 536 173 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_1181 NR:ns ## KEGG: GYMC10_1181 # Name: not_defined # Def: transcriptional regulator, TetR family # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 4 173 3 172 172 210 68.0 2e-53 MVKKNTSSASRRTDIVSAAIEVFAETGYYRATTAQVAERAAISQPYVYRFFTKESLLVEA LEVSWQRIETAFRQVLESASPDTLERGFIKAYEGILVAHGSEILLQMQAQTIREEAVRKT MQEGMSRIKRLVLNAFEEAEMEDAERRTSDFLARGMLCNVSMAIGLPDLMLKK >gi|333606354|gb|AFDH01000056.1| GENE 151 167692 - 168741 664 349 aa, chain - ## HITS:1 COG:RSp0219 KEGG:ns NR:ns ## COG: RSp0219 COG1960 # Protein_GI_number: 17548440 # Func_class: I Lipid transport and metabolism # Function: Acyl-CoA dehydrogenases # Organism: Ralstonia solanacearum # 10 345 20 371 393 105 27.0 2e-22 MIFTPEEVQRIREQSPGMESEGALTEELLNLIYQNRWFKLFVPDDLNGRMTTLPDALRIF RECSRADGSFGWLVTIGAGGGFFASLMKPEVGASLFTGEKAVVAGSGAPTGTAKRVEGGY LVSGRWKYCSGAVHATMFTANCIVEPEGPERGENAEIRSFIFTPDQVRIHRDWNTFGLKG TGSHSMSVADLFVPDRMTFLFTEVHAYGDELIYRYPFIPFAQASFAAVALGIAAHFAEAA RDYIRVKERKANVQRKLEEQEALLSRTESAFYSAITRSWDELVLHGSMSEADEKQVSEQC LSAVRSMLTGTFELFSLLGLSAAMEDSPVNRTWRDLQTVCQHSLLLPEE >gi|333606354|gb|AFDH01000056.1| GENE 152 169212 - 170504 610 430 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149914878|ref|ZP_01903407.1| 30S ribosomal protein S2 [Roseobacter sp. AzwK-3b] # 25 404 31 412 425 239 41 1e-61 MERQKQKAILIGIHPGNRTDFGYFMEELANLAAAAGIEEAGMLTQKLARSNPSHYIGKGK IEELLELIETHGADLVICNDELTPSQLRNLEAALNRTVMDRTALILAIFAERARTREAQL QVEVARLHYMLPRLVGLRESLGRQGGGSGLKNRGAGETKLELDRRRIEERIVMLQKELEQ LVSHRQTQRKKRRKTEVPVVCLVGYTNAGKSSLMNAMMEAHNPGPGKQVMAEDRLFATLE TSVRSIRLQDGRSFLLTDTVGFVSQLPHHLVKAFRSTLEEVAEADLLLHVVDSSSPVYER QMAVTEETLKELGADHIPKLLVYNKADLSSLEFPCADNGNVVISAKRRAGISELTEQIRK RVFRHEVRCELLVPYDQSHVAAYFNEFARVRSIRYEADGARLTVECPESVLERYRGSYIP LSEGQAYPGH >gi|333606354|gb|AFDH01000056.1| GENE 153 170680 - 171957 1268 425 aa, chain - ## HITS:1 COG:BS_ydaR KEGG:ns NR:ns ## COG: BS_ydaR COG1914 # Protein_GI_number: 16077503 # Func_class: P Inorganic ion transport and metabolism # Function: Mn2+ and Fe2+ transporters of the NRAMP family # Organism: Bacillus subtilis # 1 424 1 424 425 512 68.0 1e-145 MAEQDITKFKRTPLTAESVLSGDVKGLKRLLPFLGPAFIAAVAYLDPGNFATNITAGSKY GYMLLWVIAVSNLMAVLIQALSAKLGIATGMNLPEVARERFPKPVSIFLWIQSELVIIAT DLAEFIGAALGLYLLFGIPMLPAALITAVGSFAILELQRRGYRSLEAGIAGMILIVVCSF ALQVINAQPDAGAVAAGIFTPKFQGVDSILLAAGMLGATVMPHAIYLHSSLTQKRIVGKN EQEKKRIFKLEFIDIVLAMVIAGAVNMAMVIISAALFFKNGLGVEELDEAFHKFYELAGP VSAVSFGLALLIAGLSSASVGTLAGDVVMQGFINKRINLYLRRAITTIPPLVIIIMGIDA TRALIMSQVVLSFGIAFALVPLLLFTSNRSIMGGLVNQRWTTFLGWIIAAIVILLNLFLL VTTFI >gi|333606354|gb|AFDH01000056.1| GENE 154 172291 - 173205 817 304 aa, chain + ## HITS:1 COG:no KEGG:LBA1927 NR:ns ## KEGG: LBA1927 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 52 286 92 356 378 72 29.0 2e-11 MRRKWMRSSVSAILGGTLLFGSLAAFSPATTYAAADKTRYKSFFNAAEEGPIIPGLKSDK KWVPQGLALWTSKKWIIASQYSGNDTEASSISITDKTTGKRLKTFYLYESGGKKHTGHVG GLAVSGRYLWATSGKNAFRIPLTSLTGLPDYSKIVMKKYTLSHQASYATFSEGVLWIGTY TKGATCTTTGPQGTVYGYRLSANEDLASKADYTWKTPDRVQGMALTKDKVMYSQSCGRNN DSKLLIHKRGSGGAKISQLTMPPMSEGISFYGTDLYVNFESGSKIYDGRDRLYNFYYLDT IKFK >gi|333606354|gb|AFDH01000056.1| GENE 155 173287 - 175842 2314 851 aa, chain - ## HITS:1 COG:all2899 KEGG:ns NR:ns ## COG: all2899 COG4251 # Protein_GI_number: 17230391 # Func_class: T Signal transduction mechanisms # Function: Bacteriophytochrome (light-regulated signal transduction histidine kinase) # Organism: Nostoc sp. PCC 7120 # 29 632 11 596 751 414 39.0 1e-115 MADRSNAKDPEVLNRTLLTEGNFASLDEEIDLTNCDKEPIHIPGLIQPHGVLLAVTNTTE QPLIVQCSRNVDLLLGRTTEELLGRPLEEVVGKAQLAALQKELGNRTFDPSKLHYMNISI EVGGEAVSFYGIMHESEDLLILELEPASDKEETNSLDYQWIQTFFCKMKGAGNRVEASQM AAEQIKEMLGYDRVMVYEFDEEWNGKVIAEAKEEGLEPFLGHHYPASDIPKQARELYLRN WLRMIVDVYYKPVEIVPTLHPATGRPLNLSLSVLRSVSPLHIEYLQNMGVGATTTISLIH DNKLWGLVTCHHYSPKYITHRVRNLCNFLGFFFSSELYQRQQLDDYQTEIELKTMANRIS NIFIGNTSANRVIEQLKLEEKSLLRVMNASGVAVCYKDKLAIFGSAPEKEQIRELAFWMS RQADDYEYHTSRLSQEHPPAAAYKKSASGALYLALSPDGKDYVIWFRPEVVQVVNWAGDP SKAVLRENDGVRLSPRKSFEKWRQVVESSSLPWKIQELRQLSDLKSIVLKQTENQMRQAE EQAQQNSRILKENEKRYLQLMELSPVAFFTITDKRIVYCNEQSVELLQAANPEELIGKAV AEFVHPDFLPVLQQKMADLDTSALSLFSMSGRYVTVTGGELQLEITMASVVYDGKPSLFA IARRREEGEKELFSEVSNQLQTFINTDSLTEMPNRRFFDENLEKEWKRAAGAGSPVSLIL MDIDHFKAYNALYGYQGGDTCLQWMSDILVAIGKPNEAVIARYSGGTFVLRLEAAIEKAV DLAEQIRLGVLSMKIPQTHSDSGDYLTVSLGVASAYPEPGSGPDDLVYAAEHALQKAKNE GRNRVSVIPPV >gi|333606354|gb|AFDH01000056.1| GENE 156 175865 - 176476 669 203 aa, chain - ## HITS:1 COG:DRA0052m KEGG:ns NR:ns ## COG: DRA0052m COG3230 # Protein_GI_number: 15808030 # Func_class: P Inorganic ion transport and metabolism # Function: Heme oxygenase # Organism: Deinococcus radiodurans # 5 185 2 174 198 95 34.0 6e-20 MTTTIVSRLREETAPFHDQIEQNAYAKAIMDKSLTMETYKTYLEKFYGFILPSEKALSAL PEWEKLGFDIESRLKTPLLENDLEQLGLTKRQIEELPQCGNLPDVSTLPRALGYLYVLEG STLGGQLITKQLKAILSVDPEVNGCYFNSYGAELRTKWSEFREFLLENVKEEEQEQVLAA AKETFILLDQWLKEAPGSHAAVI >gi|333606354|gb|AFDH01000056.1| GENE 157 176742 - 178559 2148 605 aa, chain - ## HITS:1 COG:BS_ydaO KEGG:ns NR:ns ## COG: BS_ydaO COG0531 # Protein_GI_number: 16077499 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Bacillus subtilis # 1 605 1 607 607 670 59.0 0 MVGKFKRLLIGRPMKSAEIEGEKLNKLKALAVLSSDALSSVAYGTEQILIVLMAAGFTAL WYSVPISLGVLGLLLILILSYRQTIFAYPTGGGAYIVAKNNLGVHTGLLAGGSLLVDYIL TVAVSSSAGTDAITSAFPSLHDHRVLIALTMILFLTIMNLRGITESASVLALPVYLFVVS IFVLIISGVVNYFTGGVHAAVPEMSTTVSNISLFLILKAFSSGCSALTGVEAVSNAIPNF KKPAERNAAATLVMMGTILGAMFIGISLLAYWYGIAPSEKETVVSQIANATFGRGFIYYF IQGVTALILFLAANTAYSAFPLLAFMLAKDKFMPRMFMVRGDRLGFSNGIINLGVLSALL VIVFNGDTENLIPLYALGVFIPFTLSQLGMMVRWIKLKPSGWLGRFIVNTIGMLTTLTIS LIFVFTKFSQIWMVFFFLPLVIFIFIQTKRHYENTADQLRIDLARDKPLIKGNTIVVPIA GITQVVKQSLGYAKSVTDNVVAVYVGFNDEDIERMEKKWEEWDPGVRLIVLRSSYRSIIR PLIKFVDTVEWKTAETDHITVLIPQFITKHWWQHILHNQTSLLLRAYLFNRKDVVIATVP YHLNK >gi|333606354|gb|AFDH01000056.1| GENE 158 178912 - 179811 711 299 aa, chain - ## HITS:1 COG:BH3212 KEGG:ns NR:ns ## COG: BH3212 COG0640 # Protein_GI_number: 15615774 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus halodurans # 3 271 2 268 298 110 28.0 4e-24 MTYEIETAFSPVHECLLSFLLYKRRQNIKYLYVGPSWHQQIQDIMDPAYLDKLDALDDLT FVDLLSVLVDQCPDATSMEIFLEWISTLSAGELYERLASYMADGKNPVWLHLGEQRDLFT ELLSVWQEKYMDRWTGMDALREGAREVEEAVRTGKKAEDIVDAFVTGMRIELTAIRKVHL IPAYHFRPLHTFAVFKDKINILYPHDIEKPDIFTVSAAAKALSDEKRLEILKLLSVQRRS FTDISKEIGGAKGNVHHHLMTLRMAGLVSVHLTDEATFLALRPGLSERLKHQLDHILKG >gi|333606354|gb|AFDH01000056.1| GENE 159 180009 - 181283 1373 424 aa, chain + ## HITS:1 COG:BS_ykuC KEGG:ns NR:ns ## COG: BS_ykuC COG0477 # Protein_GI_number: 16078467 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus subtilis # 7 423 1 418 430 289 40.0 7e-78 MQTDTLLGLFKNRNYAYLFGAQLLSQIGSVTGLTAFAFYMLDKFSTQPAYATLTEMMYSL PTLFLFFLTGVAADRFDRQKIAVSCDAVNAGLSLLLLGAIAWGWMPLVFAVLFIRSAVSK MFHPANAALVRGVLDPAQMPAAMGMNQMLMSAFVLLGTSLGAVSYWYSGILGSVAIDMVS FVISALLIMRCNIPQEVRQPNGPASWRTLKLKQVGQDFASGLIYVRRHSIVLSLLAGILI LGLANGGGSVMYLFSLKYKLAPDTYESLQIGMTAVLGAGMLIGSIVSVRLAKKIPLYGMI IASFFLGAVTHLLQALAADTVTFMALYLLYALSIPLCNVAFFGWLAQVTEARMMGRVQAL IQPIMMLTFTAMQAWIAYAFPAHMSVESIFYVVGAAELALGLYYLLVLPPLARKRAEQAA KEAA >gi|333606354|gb|AFDH01000056.1| GENE 160 181367 - 182137 660 256 aa, chain - ## HITS:1 COG:CAC0231 KEGG:ns NR:ns ## COG: CAC0231 COG1349 # Protein_GI_number: 15893523 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Clostridium acetobutylicum # 6 255 4 254 254 143 34.0 3e-34 MSLTYEDRRNTILKQLDLEGKVQVHLLSAEFNVSTETVRRDLDRLEKEGKLRKVYGGAVK VRSDRVEPPFLKRAQMMQREKASIGKLAASLIGEGETVILDNGTTTIEILRHLQNRPDVT LITHSVPILAAAMDTFAGKIIFAGGEINRHYQAATGALTDQLLDQFKVNKAFISVGGISL VDGITDYHLDEAVLSRKIMQRAEESILVTDHTKFGVTTFARVSKLEEVSMVITDSGCPRD WIDSVEALGIEMRISS >gi|333606354|gb|AFDH01000056.1| GENE 161 182463 - 183323 781 286 aa, chain + ## HITS:1 COG:STM3796A KEGG:ns NR:ns ## COG: STM3796A COG0697 # Protein_GI_number: 16767083 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Salmonella typhimurium LT2 # 1 282 10 283 286 96 30.0 6e-20 MILLAFLLVVLSGLTHSIWSLFAKSSRNKSVFLWCIAMIAAVALFPPFIQEIGSASLDRG AWLLLLSSAGLQAVYGLLLSRTYQMGDLSQVYPIMRGTNTLLIPAFGVAFLGETLSVPGW IGLLCMIIGFVMLSGLLTRKSAGHGEGFSPAPVLMALGVGLCTTSYVLVDKINLQHVSAL TLLEVTNIGFAAGLTPAVLSSRQLSSEWKLNGKRIVLGAVLNTGSYLLFLLALAYAPVAH VSPVREIGTVFATLLGIFVLKEKQGTLRILSSLVITAGIMLIGFFG >gi|333606354|gb|AFDH01000056.1| GENE 162 183530 - 184429 884 299 aa, chain - ## HITS:1 COG:no KEGG:PPSC2_c3877 NR:ns ## KEGG: PPSC2_c3877 # Name: not_defined # Def: chitosanase A # Organism: P.polymyxa_SC2 # Pathway: Amino sugar and nucleotide sugar metabolism [PATH:ppm00520] # 37 299 71 333 333 407 78.0 1e-112 MNAALSVGLASTLLLTSVLLPGNALANSNPAQGEAYAAPANSHDSNFSPSTLQFLKSKTG LDGEQWDNIMKLVNKAEQDSLKWTEYYGYCEDIDDDRGYTIGIFGATTGGSNDTGPDGPA LFKEYDAVKGASNPSVEGGLARIGAHGSMKGSILKITDSEKVFCGKIKGLEDDPAWREAM WHTFYNVYIKYSVEQARNRGFNSALTIGSFVDTALNQGAEGDSGSLAGILAKSGSSTNEK TFMTNFYAKRTLVVDTNEYNQPPNGKNRVKQWSSLLNTGETDLKDADVAVKKATNWIMK >gi|333606354|gb|AFDH01000056.1| GENE 163 184781 - 185377 426 198 aa, chain - ## HITS:1 COG:CAC0032 KEGG:ns NR:ns ## COG: CAC0032 COG1309 # Protein_GI_number: 15893330 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Clostridium acetobutylicum # 20 169 8 155 189 64 25.0 1e-10 MAPLNDQQLNQIRDERRIQIMGAALRVFARRGIIGTKMSMIAAEAGISHGLLYHYFTSKE ELFTTLVQGAMEASQEAMKEVYLLPGTPLDKIRRLSEEMLDKSGALYYLLIHQARTSEGV PDKVNQLMRDYSLDTYVEQLLPLFREGQERGELDAGDTEEMIASYVSVLSGLMVVTADGN DDYRVPPVDRLLRMITKR >gi|333606354|gb|AFDH01000056.1| GENE 164 185424 - 186911 1266 495 aa, chain - ## HITS:1 COG:no KEGG:BcerKBAB4_5692 NR:ns ## KEGG: BcerKBAB4_5692 # Name: not_defined # Def: hypothetical protein # Organism: B.weihenstephanensis # Pathway: not_defined # 4 488 7 488 508 426 46.0 1e-117 MNTYETGNREKRKALVIGGSIGGLLTARVLADFYDEVLVIDKDEFPGEPADRSGTPQGYH PHSFTPRGKTIVERFFPGYEEDLLQLGALSSLNKTVTNTNEYGTISGPYQRNDLKFSRAL LEWVIRERVKRIPQVSFLPGHEAVQLMSTPDRKKVTGAVIRGRSSGGEEKPCQADLVVDT GGRLSKLTKWLEVMGLEVPASDYLNVELGYSTRRYRVPAAKEHLVKEWDVINIAGQPAKG TFTGVLSFIENNVAEMLLYRPGGQYPPTKEAEYEKAAANLPDSVIAEILGELEPAASPRG FRVPQLYRRHFEQMTDWPAGLLVLGDAYCIYDPIFGQGMTVAAIEAETLEACLRRQSLAP APSPAFERNVLRRLQDVIEPAWWLNCAADLRWEGVTYSGAAPLKGIEFGRRYMNLVLKYA TGEKNMKFFGLYWAVNTLALPPGHLFHPDMVREVLSSSEEGRRLLDELLPEGSGSLAAVL EEIIPAFSETAYETV >gi|333606354|gb|AFDH01000056.1| GENE 165 187124 - 187672 496 182 aa, chain - ## HITS:1 COG:BS_yesJ KEGG:ns NR:ns ## COG: BS_yesJ COG0454 # Protein_GI_number: 16077759 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Bacillus subtilis # 8 179 8 177 180 136 41.0 2e-32 MPNMILLNDQVSPEIKASIAGAEEYPEIERLMVETAKWLRSKGSTQWSGLLSGSDDHDMA GALERQEVVVFKAAEGTLLACAILQQEAEDWDRKLWRLDPGESGTAIYLHRLTVNRGQSG RSLGKTVMDWIRQEMSFPGKDRIRLDCIGSNETLNAFYKTCGYTYIGESDGFSLYENRLP VR >gi|333606354|gb|AFDH01000056.1| GENE 166 187808 - 189013 1193 401 aa, chain - ## HITS:1 COG:PA1908 KEGG:ns NR:ns ## COG: PA1908 COG0477 # Protein_GI_number: 15597104 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Pseudomonas aeruginosa # 9 366 21 375 403 135 31.0 1e-31 MKKRFLLIFLTVLAAMTSIATFNPILGLLARSMGLSEIQTGSLVSVTGLFWITGTFLWAK WARTGRKLVMITALLGYIVTLAAFAVLSDLARSGEPDPARLYIQLLFLRAAGGFFFGAIP AMAQSYLMEWTTAENRASGMALFGGANGLGFVLGPALGALLTPVGLTAPMYASAVLLALT AAAFWLMIPGGRPAVASTRAGKLSAADPRISLYLAIGLTLSIVMIILQVTCGIFIQDRLS VTSEAAARYIGLGLSSAGVLVVVVQLLIGRYLKWPTGRLLKIGLSSLCAAFLLFLLWPAM YLLVFLLFGIGIGFTLPGYITAASLAVTEEEQPSVASFTAAVQGVGSFAGPLTGTLLYSL HTSAPYAVCALLTAVFVLAVWARPRPGAFRQAASAPSDRTR >gi|333606354|gb|AFDH01000056.1| GENE 167 189368 - 190360 867 330 aa, chain - ## HITS:1 COG:slr1489 KEGG:ns NR:ns ## COG: slr1489 COG2207 # Protein_GI_number: 16329200 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Synechocystis # 12 319 9 321 330 126 30.0 5e-29 MPSAIQIDRMHDYFDRFSEHMEGQISGSGGERTLLLSPRLGEGTLTRIPIRTGMEIVISD FELIRDLKVQVHGSYSLFELNYCLEGDIYCAWEGNELQTGSLSGNVFFMENMNVYMEKKG GVRNRTLEIRLHPELLLRSARGPEETEQIRHLLSRSRGRIGRFTDTPLIRQGVRDLLQSG RLGSMRRWYAESKAMELIALISQPEDGVKEAAGISLTPDDRNRLAEARRHVLDRLDSPPS IPELAQLCGVNEHKLKKGFRSLFGMTVYELVRRERMKRAAEYMDRGMNVSEAAVQLGYAN MSNFTAAFRKQFGLNPGQYLKQANHERVRL >gi|333606354|gb|AFDH01000056.1| GENE 168 190587 - 191741 1179 384 aa, chain + ## HITS:1 COG:BS_yoaN KEGG:ns NR:ns ## COG: BS_yoaN COG2140 # Protein_GI_number: 16078927 # Func_class: G Carbohydrate transport and metabolism; R General function prediction only # Function: Thermophilic glucose-6-phosphate isomerase and related metalloenzymes # Organism: Bacillus subtilis # 7 384 11 387 392 600 73.0 1e-171 MSKPVKEELQIPQPIRADGAGATDPGPRDILRDLENPNMLVPPATDAGLIPNMKFSFSDA HMQLNHGGWSREVTVRELPIAKTLAGVDMRLTPGGVRELHWHQQAEWAYMLTGKARITAV DEKGRNFIDDVGEGDLWYFPPGIPHSIQGLAEGCEFLLVFDDGSFSDLNTLSISDWFAHT PPDVLAANFGVDESAFENIPSGQVYIFQDKVPGSIVSQEIESPYGAIPRSFKHRLLAQTP TVMPGGSVRVVDSSNFPVSVTVAAALVELKPGAMRELHWHPNQDEWQYYLSGQARMTVFG GNGSARTFDYRAGDVGYVPFAYGHYIQNTGEETVWFLEMFKSDRFADVSLNQWMALTPRD LVRDNLHAGPELLDSLRKQKRPVV >gi|333606354|gb|AFDH01000056.1| GENE 169 192247 - 193806 1217 519 aa, chain - ## HITS:1 COG:alr5189 KEGG:ns NR:ns ## COG: alr5189 COG0642 # Protein_GI_number: 17232681 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Nostoc sp. PCC 7120 # 150 498 208 528 537 158 31.0 3e-38 MLLRFGEDNQGKTLEEAMSIRMRLTLLYSGILSATLLLFGIVLYSFLQIYFINDLKDSLR EQTDVLQESVTYKLKVDPLGSDLDIQLDHVDTVQSGMYLQLVNLINGDKARTRNLGQVEL PFSKDAAGKKTEGYYITEEVQQSPFLIYNQPLLLNGKLVGVLQSAYNIGLIDKFLSILRL VLILLSLVIVCTASFMGWLSSKRALKPVYALIEATRQIQKSDDLGNRIAVKPTGDEVSLL GTTINGMLERIQHMYGELDKSYMTQRRFVADASHELRTPLTTISGNAEFLQKAWLSFRQA PERRIDKEQLELSIEAIHDIADEAGRMGRLVHNLLTLARADSGLHLRKDRLNISSIVQDV IRKSQVLAKSAEFQAGPLEGLESLQIVGDRDYLQQLLFIFVENAFKYTENGCVRFFARAA GENAELIIEDTGIGMDEADIPHIFDRFYRADPSRGETEGTGLGLSIAKWILEEHRGTVEI RSRRNEGTRFTIRLPVVPATHEEGRMPALSEAASAGIEG >gi|333606354|gb|AFDH01000056.1| GENE 170 193970 - 194812 882 280 aa, chain - ## HITS:1 COG:BS_ytbE KEGG:ns NR:ns ## COG: BS_ytbE COG0656 # Protein_GI_number: 16079957 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Bacillus subtilis # 1 280 1 280 280 415 73.0 1e-116 MTKHLQDTTTLHNGVKMPWLGLGVFKVEEGPELVEAVKTAIKNGYRSIDTAAVYGNEEGV GQGIREGLAETGLSREELFVTSKVWNADQGYESALQAFEVSLRKLGLDYLDLYLIHWPVQ GKYKDTWRALEAIYESGKARSIGVSNFHVHHLQDLLQEAKIKPMVDQVEFHPCLTQEELR AYCREQGIQFEAWSPLMQGELLDNEVLKTVAGRHGKSVAQVILRWDLQNGVVTIPKSTKE HRIIENASVFDFELTPDEMSRISGLNENKRVGPDPDNFDF >gi|333606354|gb|AFDH01000056.1| GENE 171 195063 - 196295 1246 410 aa, chain - ## HITS:1 COG:TM0024 KEGG:ns NR:ns ## COG: TM0024 COG2273 # Protein_GI_number: 15642799 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucanase/Beta-glucan synthetase # Organism: Thermotoga maritima # 36 273 211 457 642 250 51.0 3e-66 MMNRKRLSLLLSVFLLLSLFSSFVLGRTAGASSASDWVPVWSDEFNGPNGSGPDSSKWNL ETGAGGWGNNELQHYTSRTSNAYQENGNLVIQALKENYNGSGYTSARLTTQNKFNLKYGR VEMRAKLPYGKGIWPAFWMLGKDIGTIGWPASGEIDIMEYVGALEPNRAYGTLHGPGYSG CCGLSGSYLHPQNLSNDYHTFALEWEPGVFKWFVDGKLFHTRTLADAGTNAWVFDKEFFF LLNLAVGGNWPGYPDGTTVFPQKYYIDYVRVWQRAGGYNVVALKSEANGKYVTAEHAGAS PLIARSETVSGWEKFELVDLGGGKVALRALINNRYVSADNAGGSPLIANREAIGTWETFE LGKTADGKQTLKALANNQYVCADNEGASPLIANRATASKWESFVLMKQNP >gi|333606354|gb|AFDH01000056.1| GENE 172 196421 - 197320 958 299 aa, chain - ## HITS:1 COG:DR0512 KEGG:ns NR:ns ## COG: DR0512 COG0697 # Protein_GI_number: 15805539 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Deinococcus radiodurans # 1 280 15 295 301 89 29.0 1e-17 MNPIKFGSLVVTATLLMGSSFAVGKMGLAYVSPLLLVGVRFTLAGALMALWVLGTRRRMP QTAAGWGRIALIGLFQTTGVMACIFLSLRTISAGESSLLTFVNPLLVVLLGTLFLGMKYR WSQWAGIGVGFLGVAVTLGFQLDFKTGTLFGLGSAVFWAAATLLVKRWSASFDIWVMTAF QMLAGGLALLVLGLLVEKPLFVLNADSLWIILYLAVLGSIVQFAAWYYLLSRGDPGKTSA FLFLAPFFGVLSGWLLLGETVRSYVYVGGLLILAGIFLVNWAPARTGAGSSRFEKDHSA >gi|333606354|gb|AFDH01000056.1| GENE 173 197630 - 198628 992 332 aa, chain + ## HITS:1 COG:lin2073 KEGG:ns NR:ns ## COG: lin2073 COG0614 # Protein_GI_number: 16801139 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-hydroxamate transport system, periplasmic component # Organism: Listeria innocua # 48 308 26 286 313 112 31.0 1e-24 MNLARPVSTLFFTAILSAALLSGCAGSGSQKTGDTASKQTANPAGTHTAAADKSAASPRK VTDYKGHTAEIPAAAKKVIFYGETFSDLDALGVQAIGTATNWLTGTVYADKHKTITDIGS PINLEKVLELGPDLILTGSTDEKEYEQLNKIAPTLMFNTFLPMKERLLLLGDLLDKKPEA EKWLADYESRSEAMWKILHDAGIKPGETASVFTYYPGNRLFVMASTGLSQVLYDKNGFVP TPPIRDVLDEKAGFKQISPEVLPQVAGDRIFILTPVDKEAQQSTEELLKSRIWLDLPAVK NGHVYTLDILKSGSDAATREWLLNEIPVLLKE >gi|333606354|gb|AFDH01000056.1| GENE 174 198780 - 200498 1032 572 aa, chain + ## HITS:1 COG:lin2073 KEGG:ns NR:ns ## COG: lin2073 COG0614 # Protein_GI_number: 16801139 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-hydroxamate transport system, periplasmic component # Organism: Listeria innocua # 290 545 42 303 313 116 29.0 1e-25 MVPSESGSLPVRSLLFQFAAADKIMPGTCEPAAGPEVDAGEKPDVHTLLLISAGTGTLRV ADETFFCAPDKCYMIPPGASYRLRMDSDRRLTYYRITCRIVYCKGSHTALYLKPLVRGRV EWSVYPFARAVRFADLLTESDPSGELQHFYRQLQFQELMGFLLEHNVSSPEPSSCTHAVE NSIRYIQEHYKRPITVKFLAEQARVPHWQYSTIFQELTGKKPLDYLNELRIEKAKEWLQS TREPLREIAKRVGFADEYYFNRRFRQVTGITPRQYSQSVQKRTRIKDWTGHEVEIPALPR RVIYHGETFGDLAVLGVEAIGGGYPWIHQTGRLKSPVKDIGFPINPAVTEALKPDLIIVS SEDESQYDTLRAIAPTLTFDSFAPLDERIELLGTILGRRREAENWLARYEKKAAAMWSRL RASLQPDETASVFTFARNRFFVMGTIGLSSMLYHPDGFRPAGRTRRLLDKKLSYLELLPE EMKDYAGDRIFMLLPADAECRSAAAELMKSPLWTELPAVRRGCCYAVEADEWNFADATTT EKFLDELPRLLGKEQIVPAHGGVRPGPKPEES >gi|333606354|gb|AFDH01000056.1| GENE 175 200551 - 201354 206 267 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 23 233 147 353 398 84 30 8e-15 MTLVQERLHTSSLHIGYGDLSIVNDLNISIPQGKITALVGANGSGKSTILKTMARLMKPA SGGVLLDGVSIHSKSTREVAKDLAILPQNPSAPAGLTVTELVAYGRYPHQSGFGTVTSED KRVISWALEVTGMMPFHARPVDQLSGGQRQRAWIAMALAQQTDILFLDEPTTFLDMAHQL EVLQLLHKLNSEEKRTIVMVIHDLNHASRYAQHIVAIKSGSVICEGSPADVMNQDMLREV FAIHADIVADPRTGVPLCLPYELAPEA >gi|333606354|gb|AFDH01000056.1| GENE 176 201551 - 203302 255 583 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 333 554 2 226 245 102 33 2e-20 MLRRFFAYYKPYKGLFLLDFSCAIIAAVLELAFPLAVNRVIDDLLPSGKWEWIAWGCVGL LGIYVISAALHYVVTYWGHKLGINIESDMRTKLFNHVQKLSFRFFDNNKTGHLVSRMTND LMDIGEIAHHGPEDLFIAVMTLAGAFGIMLGINWKLAVLTFIIVPGMISLSLYFSRKMSH AFDKMFESIADYNARVENNVSGIRVVQAFTNENYEIAKFASNNGQFRRSKLLAYRIMAWN SSISYLLMKIISLFVLLCGTWFVLAKQMSYGEFIAFVMLSNVFLGPINQINSVIEMYPKG IAGFKRYLEILELEPDVADAPDARDVDRLAGNIRYQNVSFGYENKENVLNGLNLSIRPGE TVAFVGPSGAGKTTLCSLLPRFYEVTDGAITIDGIDVREMKLESLRSHIGIVQQEVFLFD GTIRENIAYGKLGASDGEIREAAKRAQLEELILSLPEGLDTRIGERGVKLSGGQKQRLSI ARMFLKNPPILILDEATSALDSETEAVIQEALWELSKGRTTLIIAHRLATVKHADRIVVV TKEGIAEQGSHEELLAGGGAYSKLYAAQFGAELLNKLGSAVPG >gi|333606354|gb|AFDH01000056.1| GENE 177 203357 - 204406 1007 349 aa, chain - ## HITS:1 COG:BH1082 KEGG:ns NR:ns ## COG: BH1082 COG0609 # Protein_GI_number: 15613645 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-siderophore transport system, permease component # Organism: Bacillus halodurans # 19 346 3 333 334 314 55.0 1e-85 MNLNLDYSPILAHEKKRKRRNIAILVIFGLLLVLTFVISMNIGFIRLSPTELFTTLIGEG TRKQSLILFDFRLPRIVLSMLAGAGLAISGAILQGISRNALADPGILGINAGAGLAVLLF ICFYPSAAAAPVFLLPVLALAGAGGTAMLIYTLAFKRNEGLSPTRLLLSGIAVAAGISAA TIVLTLRISPEKYQFVATWMAGSIWGTTWKFVIALLPWIVILSIYVFCKARVLDVLNLGD QLALGLGAPVERERFLLLASAVGLAGSCVAVSGGIGFVGLIAPHLARRLVGPGHKVLLPA AALAGALLVCAADTLGRWVLQPSEMPAGIVVAVIGAPYFLYLLARSKTE >gi|333606354|gb|AFDH01000056.1| GENE 178 204408 - 205460 1071 350 aa, chain - ## HITS:1 COG:lin2072 KEGG:ns NR:ns ## COG: lin2072 COG0609 # Protein_GI_number: 16801138 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-siderophore transport system, permease component # Organism: Listeria innocua # 13 350 4 341 341 368 62.0 1e-102 MIQQNAARETQAASSVPLRTRPLAAALILTAGILLLVLGIGVSVSFGAADILFSTVWEAV FHFNPESTQHQIIADLRMPRVLGGAMVGASFAVAGAIMQGMTRNPLADSGLLGLNAGAGF MLALCFAFFPGLAYSKLILMSFLGAAGGAVLIYGIGSMAKGGLTPLRLVLAGAALSALLS ALSEGIALYFHIGQDIAFWYAGGVSGTTWVQLKVMLPWFLAALLGAIALSRSITMLSLGD EIAKGLGQRTGLVKLGGTVVVLILAGASVSVVGAVGFVGLIIPHLTRYLVGVDYRWIIPC SAVLGSLLVVVSDLAARMIHPPYETPIGALIALIGVPFFLYLTRKERREL >gi|333606354|gb|AFDH01000056.1| GENE 179 205939 - 209223 3528 1094 aa, chain - ## HITS:1 COG:BH3963_3 KEGG:ns NR:ns ## COG: BH3963_3 COG3401 # Protein_GI_number: 15616525 # Func_class: R General function prediction only # Function: Fibronectin type 3 domain-containing protein # Organism: Bacillus halodurans # 866 1091 295 520 525 99 30.0 4e-20 MKKGKTRRPLLVLMSLMMTIAGWSGAASAAEPAEAEAPAAALTSKLAQKTYGSPEELLIP NNYTVAVFNGAAGKEDGHNVLYATSKGKPGHLNVIDLDDYKLLRSIPIAPSESSWAHTVA PDGTLFLAADGGGARLWSYSPVTHTPVQVAQFDGQSVPNSITTDEQGRVYVGTYPGGKVY QYDPATKLTKDYGRVIGQLDSEYVRSIAYQGGNVYAGTAHKQIVRVNLQTGAKTDIAASL TVKNDTVYDLDTIDNRYLFARYTDGSGVPGEGYIYDTQTEAWLDIELQNVTGLHATDSQN GKLYYMSDKKLKTFDLATLAVEETGMEYGTGLRGADWVEFENNPDLPGKTLVTVRYDGGV TYLNIDTKQVIQKPPVIPGLPGVVNRLAAVSQTQLITTGSQARSSLVNLTDNTAKPFSIG QADSVYPIGSKVYMGVYPEGSLFEYDLNKEPGDTNPAKLAVLENDQERLVNMTSGLGKLY ISTISGYGTLGGSLTVYDPASGEIKVHRNVVQNQSVLSTTFYDGKIFGSTTIRGGLGSEP TEAEAKIFVWDGVKEQKITEFPLRVPGLDKPIFIGDLAAGPDGLIWGASYEYIFAIDPHT YEVVKSKKIYPQLNFTQWAHHPLRWSEDGLLYVLFNNKLTVIDPDTLEFRTLTDTSRFDL GMDGNLYFTDQATNTILYRMKVDGEVTEEPPGTPLPVRNAGFEDQVVNKVIPGWSPLFAT GTDYFYEVSGDRSVSGAKSLKITDKLRTASVALQSDKITVQPGGDYEAGAQIYIESGQPG LMFRFFDADNATISTLETHLDESRLAQWQKVTLRGKAPANAAYARLIAVTSRYNIASAYY DDFFVQKKEAPVPSAAAAILPEPNADGWLNRDALLRIQTAHASAVRYSAEGAQPSAEVTV NGTAAELSVAAEGVTTVTYSAISAAGIQSAPGKIAVRLDKTAPSVQFTAEPVYTVDRTIE IRCAAADALSGLAVDPCAQALMSAPAYSQEPGKHEISVTAADKAGNKETAVYTYEIAVNY AGMCSLVKQFAPDDRGTELALCATLTAARKAEEKGGSKAKEAVLLAFTKQVDAFSGRKLT PEEAGVLKKLAAFL >gi|333606354|gb|AFDH01000056.1| GENE 180 209638 - 210699 940 353 aa, chain - ## HITS:1 COG:lin0484 KEGG:ns NR:ns ## COG: lin0484 COG0820 # Protein_GI_number: 16799559 # Func_class: R General function prediction only # Function: Predicted Fe-S-cluster redox enzyme # Organism: Listeria innocua # 1 353 1 353 367 519 69.0 1e-147 MNKPSIYGLTFDQLTAWLQPYGHKKFRASQIWDWLYRKRVASFADMTDVNKDCLGLLEEH FVLQTLEEHVKQESSDGTVKFLFRLSDGNLIETVLMRHKFGLSVCVTTQVGCNIGCSFCA SGLLKKSRDLSAGEIVEQIMKVQFYLDKAGKEERVSHIVVMGIGEPFDNFENLSDFLRVV KDHKGLAIGARHITVSTSGLADKIVEFADSDLHVNLAVSLHAPNNELRTRIMKINKAIPI EKLMDAIDYYLGKTNRRLTLEYILLKDVNDAREHAEELAQLIGDRRPLVNVNLIPYNPVD EHSQYQRSEKESVRAFYDILKKQNVSCSVRLEHGADIDAACGQLRSKQIKATG >gi|333606354|gb|AFDH01000056.1| GENE 181 210865 - 211068 180 67 aa, chain - ## HITS:1 COG:BH0315 KEGG:ns NR:ns ## COG: BH0315 COG3910 # Protein_GI_number: 15612878 # Func_class: R General function prediction only # Function: Predicted ATPase # Organism: Bacillus halodurans # 1 67 170 237 237 73 52.0 1e-13 MHELVGRNSQFIVSTHSPILMAYPDAAMYHLSAKGIEETTLEETEHYVIMKQFLNNKEKL LRELFGE >gi|333606354|gb|AFDH01000056.1| GENE 182 211092 - 211625 328 177 aa, chain - ## HITS:1 COG:MA0995 KEGG:ns NR:ns ## COG: MA0995 COG3910 # Protein_GI_number: 20089872 # Func_class: R General function prediction only # Function: Predicted ATPase # Organism: Methanosarcina acetivorans str.C2A # 1 157 2 157 251 192 56.0 3e-49 MHDGSDDRFLRHIELMRENVPSWKRYPFDLDAVRSLDRLVFHPKVTYIVGENGTGKSTLM EAIATAWGFNPEGGTLNFSFATNPTHSELHEYIRLSRGVRKARDGFFFRAESYYNLATNI DELDADSSWPQPLIKDSYGGVSLHEQSHGESFLPLLFTVSAAKAFTFWMNLKPRCLR >gi|333606354|gb|AFDH01000056.1| GENE 183 211753 - 211920 121 55 aa, chain - ## HITS:1 COG:BH3115 KEGG:ns NR:ns ## COG: BH3115 COG2318 # Protein_GI_number: 15615677 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 1 55 113 167 169 72 58.0 2e-13 MLDNPYTRKRDTSYAEVLFQVANHGTYHRGNLSAMLRQIGQSSVMTEYALYWYTE >gi|333606354|gb|AFDH01000056.1| GENE 184 212477 - 212710 112 77 aa, chain + ## HITS:1 COG:no KEGG:Bsel_0967 NR:ns ## KEGG: Bsel_0967 # Name: not_defined # Def: hypothetical protein # Organism: B.selenitireducens # Pathway: not_defined # 1 77 222 298 361 130 83.0 2e-29 MTVSQVLGMGRLTKEQSDKAIGHKLSSENILCTDSWRAFKTYTAEKKMDIYQFKSDGKIR TKGLYHIQNVNNYHRRL >gi|333606354|gb|AFDH01000056.1| GENE 185 212988 - 213218 80 76 aa, chain + ## HITS:1 COG:no KEGG:OB3527 NR:ns ## KEGG: OB3527 # Name: not_defined # Def: hypothetical protein # Organism: O.iheyensis # Pathway: not_defined # 3 76 1 74 74 67 56.0 1e-10 MDLFLWITIGFIIIGFVVVTSMKKGMESKLAFITASMEDEESSTKAKSIIWWIVSATAWG IVSMILIVWWFHNHFG >gi|333606354|gb|AFDH01000056.1| GENE 186 214166 - 214621 -53 151 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKMQLKMKKTIVSLILATIVSSFLAISTFANSYTWSFKLDHRVIDGSSSENNKFYSLDAG VLGFSGAVSVYSLDPYSTYELEPVKILVYERKFGLDRFVGSTTVTPGRQSAQTFFTNFGS QPAGSYYIKAIKDKDDGNNIEATGSINTFNN >gi|333606354|gb|AFDH01000056.1| GENE 187 214922 - 215926 685 334 aa, chain - ## HITS:1 COG:BS_yrkO KEGG:ns NR:ns ## COG: BS_yrkO COG2311 # Protein_GI_number: 16079697 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Bacillus subtilis # 12 318 17 387 405 104 27.0 3e-22 MKTEASVKNNNRIETLDYLRGFALLGIIFINIGQMVFATTDKTAADAAVNAFMNIAVSHR FFVIFSFLFGVGFYLFVSRAKERGDRAMLLFTRRLLLLLAIGLAHHFFQPGEALLIYSIL GFLLMPFFKLKPAVVFLTGFILTIAGCFTVFLLEIWGLFLLGLWAGQIGLFRQTDRYRRG LLLTMTVSFLFLVPSYYVQEEILERTGMVDVALAAGGLSFSVFYVTALTLILRSRLAQRL LAPLNYLGRMALTNYLMQTVMILSLSALFNWPQRIHSSQLALTAAGILLIQMAASTWWFR YFRMGPAEYVWRLGTYGKKSVRHSSGMSETTVNG >gi|333606354|gb|AFDH01000056.1| GENE 188 215931 - 217874 1372 647 aa, chain - ## HITS:1 COG:BS_yxdM KEGG:ns NR:ns ## COG: BS_yxdM COG0577 # Protein_GI_number: 16081014 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Bacillus subtilis # 1 644 1 622 622 340 35.0 5e-93 MNFPQFAFNNVKRNGRAYFAYFLSSAFTVMIFFTYAVFIYHPQLDRSLMGPMTRAGMQAA AYVVFVFSFFFVLYSISMFLKSRNKEFGILTILGADSSQINRLIFLENMLVGAASIVTGI FSGIFLSKLFLLISMKMTGMEDLPFYWPFRAILLTAGSFALLFLVISLLTLLFIRKNNVL ELLNGSKKPKKEPKLSIWLCLLGIVLLTAGLMALRIGELEPGNIFIAAVTGIAGTYLFYS QLTVWVIRIVKRSRKRVWRGTRLLWVSEFSYKLKDNARMLFLVTVVTSVSCMSAGFVLSF EQENRAYYLNDPSAFRFTSYSLENIDKELKVIDGILKEAGVSYKQLETETFYVSLKGMPR YYVEPISVSQFNKIADTYNRGLTRMEALQPGEAAVFYTKDPGGKKIPVGTIELENLPGAL KVTQTRTEESLVSMFSSGTLLVLEDNEFKRLKAESEKENRISSRRFAFVVPEWNTGKLPE FDIPESIAGKKLLEWHDELQKKRQTDSFISTRAHSFLQLQQATSLFRFIGVFIALIFSIS TASFLYFKLHTELAADSQMYRALSKIGLSAGEMRKSATVQIALLFFTPIVVSTVQTVVVL GPVMNRFGVANSLGPALIASAGFLAAQAVYFVIVRSRYVRTLNKWMV >gi|333606354|gb|AFDH01000056.1| GENE 189 217849 - 218619 271 256 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 4 220 5 214 305 108 34 2e-22 MDILQVKALHKTYPGKVVTHALTDIHLTIGKGEFVGVMGPSGSGKTTLLNMVSTIDRPSS GEVSINGENPYRMKKKDLAVFRRRQLGFVFQDFNLLDTLTVAENIVLPLTLDNRKLGEME RKLQEVAERLGITDILGKRVYEISGGQRQRTAIARAVITSPVLLLADEPTGSLDSNASRV VMESLAEINEREGTTLMLVTHDPLAASYCHRIVFIKDGKLAAEIHRGDSRQTFFQNIIDT LSFWGGNTNELSSIRV >gi|333606354|gb|AFDH01000056.1| GENE 190 218857 - 219849 941 330 aa, chain - ## HITS:1 COG:BS_yxdK KEGG:ns NR:ns ## COG: BS_yxdK COG0642 # Protein_GI_number: 16081016 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Bacillus subtilis # 1 324 1 321 325 236 39.0 4e-62 MSLFWKDHRPLLLFYLAQMLLVPALYWLSGEGRPPGIVLYGMAISFAVLLLYLLFRYWQQ SALYNSLDNPSSAADGSFEMPGDSALAEAFREVLRAKERTYEQQLHAYQSKMDRHIEFMN RWVHQMKTPLSVMQLTLRELEDEHMQSLQEELDRIRKGLEMVLYTSRLDRFSEDFHVETT NLLRVVGESVAENRRLFIRKGIAAKLHIGESLEVYTDRKWLRFMLGQILTNAVNYSAGKG DSVSIAAFTQGNATVLEITDQGIGIAREDLKRVFNPYYTGQKGRQYHESTGMGLYLVKEI AGKLGHAVELESEAGTGTTVRILFRPGQRT >gi|333606354|gb|AFDH01000056.1| GENE 191 219846 - 220547 716 233 aa, chain - ## HITS:1 COG:BS_yxdJ KEGG:ns NR:ns ## COG: BS_yxdJ COG0745 # Protein_GI_number: 16081017 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Bacillus subtilis # 1 227 1 227 229 261 55.0 9e-70 MYKIFIVEDDPKIAGLLRSYLVKYGYEVGEAEDFGRVLDAFLASGAHLILLDVNLPSYDG FYWCRQIRAHSVCPILFISARDSQMDQVMALENGADDYITKPYDMEIVLAKIRSHLRRAY GSYAQTQEERTVQFGSLVLYPERYVVSVDGRSAELTQKESVLLEALMEKQGRVVGRERLL DLMWEDQHFIDDNTLNVYITRVRKKLKELGCPQAVETVRGAGYRFGAAPPGPV >gi|333606354|gb|AFDH01000056.1| GENE 192 220801 - 222069 1134 422 aa, chain - ## HITS:1 COG:STM0233 KEGG:ns NR:ns ## COG: STM0233 COG3979 # Protein_GI_number: 16763623 # Func_class: R General function prediction only # Function: Uncharacterized protein contain chitin-binding domain type 3 # Organism: Salmonella typhimurium LT2 # 227 422 137 346 587 96 32.0 1e-19 MSHWKYPLSTRFMYRALCLALGSAILLSPVQALAASETSYAVEAGNSLSSHKSENDNAYR KGGKHKRLTQGSQLEVGESRVLSSKEIRKEWDGIEPEYSPDKAVEAVKAALPQKDYEELF PYRLGSAQWHEAAKGKEYDKENQTDYFSYENLIQAVTEAANIKYKVGTRKGSKNSQEVFR LDKEGKTETLVSRSADFNSEANRGKIIETEIVDYGTFLKEGTKKNRKRELAALLAHLSHE TGGGWDAAPGGPLRWGLFWNENIAGRTGQNMSNFVDPDSSKLYPGFGDKRYYGRGPIMLS WNFNYGLFSSIIYGDKNILLKNPEIVAAEGKIGFMTAILFWMTPQAPKPSAHDVMIGKWK PSKELAEKGLKPTGFGITTMVLNGLEANQPETRRAAHYRDITSRMGVDISGEKLDTLGMK PF >gi|333606354|gb|AFDH01000056.1| GENE 193 222330 - 223124 578 264 aa, chain - ## HITS:1 COG:SMc01610 KEGG:ns NR:ns ## COG: SMc01610 COG2207 # Protein_GI_number: 15965975 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Sinorhizobium meliloti # 157 260 187 290 294 74 34.0 2e-13 MKLEMTTGRLELYKYEEAYVNEPHRHPDWFQMTIPVRGACEFTQSGMTYRLAEGEVLLQR PAEEHHFRTGPGESVLIVKLHGSLLPVPEGRGNRFDVNPAEAAERFGVWTSGLINSRNDE SHRAAESRVVHDVSRMLEAGMPPAPGHAADTELIRSIADPHLREAWDYIRAHYKSAIPVE TLSAIALQSRYHFIRSFKAATGLTPHQTILKLRMQEARRLLIRTSETVTAISAGLGFSSA SQFYRSFLKAEGKTPEQFRRDSRV >gi|333606354|gb|AFDH01000056.1| GENE 194 223274 - 224059 261 261 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|90020817|ref|YP_526644.1| ribosomal protein S16 [Saccharophagus degradans 2-40] # 1 260 6 260 318 105 30 3e-21 AMDTAIIELKDVTWKTGNKELLKRVSWTVRPQEHWALLGLNGSGKTTLLNLINGYIWPTR GSVSVLGHRFGEIDLRELRQSIGWVSSSLQDKLYGTDQAQNVVISGKYATIGLYERLTDE DLNRAEALMRTMGCLHLWDREFRTCSQGEKQKVLIARALMADPKLLILDEPCNGLDLFSR EKLLESIRELTRQDETPTLIYVTHHTEEILPVFGHTLLLRKGEVVRQGATGELMNTATLS EFFEAPVRVDNHDERFYVRVP >gi|333606354|gb|AFDH01000056.1| GENE 195 224236 - 224943 176 235 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|182701677|ref|ZP_02955077.1| ribosomal protein L29 [Clostridium botulinum NCTC 2916] # 122 228 1 106 106 72 40 2e-11 MTSFPTQPEQVTVGLDSASRIILLAGPALLGGVLGYFIPSLARLALKLPWIPYQGPIEAL TSFHGPWVSLVTALLGAAAGLWFTGQAFKEIVFVTLSEQEIQLKKDGRVQTIPKEAVRIV FMDGKQMVILGAGGRELARETYEAPAESLPAALRPFGYSWSGEGDPYKERYARWVPDMPG VSLPVNALLKARERALQKKEKEEAADLRREIAKLGVVVRDEGTRQYWRGTDEGRG >gi|333606354|gb|AFDH01000056.1| GENE 196 225009 - 225587 656 192 aa, chain - ## HITS:1 COG:no KEGG:BMB171_C0930 NR:ns ## KEGG: BMB171_C0930 # Name: not_defined # Def: TetR family transcriptional regulator # Organism: B.thuringiensis_BMB171 # Pathway: not_defined # 3 189 4 190 193 201 55.0 2e-50 MSNNQTHQQILEAAFKLFAEHGIDRTSLAMIAAEVGITKPAIYYHFSSKEALIAFIFEET FRDYTFSHYFKLDEFTKENFQTLLIENGLKMLPQEEEEYSVLRVLNEFLLAVSRQDVYRQ RLYDIEEDFLLGFTALMEKGVELGVVAPDKISAKAYVLALVIDNLSNFMLMGFKPDVREV WAEAVAGVLIRA >gi|333606354|gb|AFDH01000056.1| GENE 197 225759 - 227510 1503 583 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_3840 NR:ns ## KEGG: GYMC10_3840 # Name: not_defined # Def: RNA polymerase, sigma-24 subunit, ECF subfamily # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 4 578 3 576 582 669 59.0 0 MNHSTTDLKNWEQMDDNNLVQRAQEGEREAFGELVRRHRSRMYGYARAITRESFLAEDIV QDALVKAFLHLGKLVEADKFLPWVHRIVRNQAFTRLKNTSARERAFSQLAPTLKSPGEES REWGDLDRILDRLGRTAAGKADAQLTPEEAYMQKETLEILSGIIGCLKPRERRIFESHFF DQLSPQEIAGLFELSSANVYQIISRSRKKVMQERIRITVGSYMRTRKDMGDMKTVMVPDH ESFTEAQSWTTAADALYAMLKAAGETLSHSMVMGLTGHAFRLNIVPSSVHIAGPTAYSFG DVLSRGLENIGYRSSYVDGMSGTLGTNANLLDPALLGKEAMSKRGINQALPEALDLIHRS LDRGIPVLAWDLFLPEFGLIYGYDDERHLLHAYECGKKDTLDYENLGRSVKEEIFVLALA DSTGATFKQRLGRAMNMIVDHYDGRERDDCTGSVKGLAAYDAWIGAFRGGEIEPNGNAYN IAVVRDARIHAVRFLNEAAEQWPLAGETAAGSADVPVLAQKAAREYQEALEHFFVLRELF PFPQGGDPNESDASAKAVSLLELIKEREQTAVGYLRELSDLLR >gi|333606354|gb|AFDH01000056.1| GENE 198 227785 - 228189 218 134 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKKKSALLLILHPLLTSLILSLLTAAVSSGLEGFEPTVEPGGSSATIFTATVLFVTLLFL FPLFLVVFGLPTVLFHLFSVRLPIRLLLYLIIGYLCMRTIPYSARYNGLFLAAGFLYAVL DAAFFFLPKKQPRT >gi|333606354|gb|AFDH01000056.1| GENE 199 228220 - 228738 646 172 aa, chain - ## HITS:1 COG:CAC1722 KEGG:ns NR:ns ## COG: CAC1722 COG0242 # Protein_GI_number: 15894999 # Func_class: J Translation, ribosomal structure and biogenesis # Function: N-formylmethionyl-tRNA deformylase # Organism: Clostridium acetobutylicum # 1 148 1 147 150 136 46.0 2e-32 MAVKTILPFGDPVLRKEAKPVTEVNARVIKLLDDMTDTLYAEEGRAGLAAPQVGILRRVI VMDCGEGLIELINPEIVDMRGEQTGPEACLSYPGYAGIVKRAEYVKITTLDRSGNTSELE GEGYLARCIQHEMDHLNGILFVDRVVRNGFYQEQTGQPADLAEAIRLTNRKF >gi|333606354|gb|AFDH01000056.1| GENE 200 228769 - 229026 237 85 aa, chain - ## HITS:1 COG:no KEGG:BBR47_08660 NR:ns ## KEGG: BBR47_08660 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 7 85 1 80 80 108 72.0 1e-22 MLGVSVLLIWMLRKIMAERGLWTGAALARLLKEKAGYDLSAPSISALLNESPKQMKADTL DALCTALDCKPGDLWVHKPSGRKGA >gi|333606354|gb|AFDH01000056.1| GENE 201 229273 - 231087 1199 604 aa, chain + ## HITS:1 COG:lin2150 KEGG:ns NR:ns ## COG: lin2150 COG4533 # Protein_GI_number: 16801216 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, periplasmic component # Organism: Listeria innocua # 18 599 14 584 590 254 29.0 3e-67 MNITEHFLRFYPLLAEAEMSEDGSFPVTIGRLADLLCCSSRNVKFILRKLEDEQYIRWQP GRGRGNSSRLTLLKEPEDAVFPLFRELMHKGKLKEAIDLLSMEALPVSLKHRLRTMLDSH LGFQVEESGGVLLDVLRVTHNKRLETHDPAYIFTTFESYLISQVCSRLISYAPAEGRFVP GLAHAWQSSDDCTRWTFFLRKEVRFHHGRRLTVQDVLFTVRRLKRLPHSAWLCEDIGEIE TDGEYALTFKLSRSSLFFPHILSSVQFSILPGDLDPASHRLTGTGPFRIAEQSERLLVLS AFDAYYGHRPLLDRVELLLLPEDTSNERRYQISGNENDSVTALGAESGQTELKVNVINPV AGSRYLLFNFRKPGIHHNADFRKAMRMILDRAAMVAELKGNRIAPADSFLQSESEGAPFE AAPIQEAVRLLRKSGYRGEQLKLFFMNKKEEEEEARWLRDRCAQAGLPLTLQQMKSYERS RVAAEADLLAAEEVLEDDLEWGLISYYKNRSNYLHHLLTEEQLGLLNRILDGFAGFPEPS RMKLLREAERTLKDNDWLLFGCHVIKKVHLHDSLQGRQMDSFGLIDISRVWIQSPSAQKA VWPL >gi|333606354|gb|AFDH01000056.1| GENE 202 231178 - 231396 410 72 aa, chain - ## HITS:1 COG:no KEGG:PPE_03792 NR:ns ## KEGG: PPE_03792 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 3 55 1 53 67 62 54.0 6e-09 MDLNIENLVSLVTNVGFPVTLCFVLLRYVLQTMGEKLDKLDSSLNKLCRLIKEIDARADR GRGKEDKNGTQP >gi|333606354|gb|AFDH01000056.1| GENE 203 231560 - 231922 410 120 aa, chain + ## HITS:1 COG:no KEGG:PPE_03791 NR:ns ## KEGG: PPE_03791 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 4 116 5 116 118 104 53.0 1e-21 MSQQSTLVEKYRKEVYRIGWRIQYKARVISNREYSVSDNAYSFTAGGFTESSDSRLDVLA LIQSLPSGTGRIVLHELFIQDKTEAQVAKDLNMTQQAVNKWKRKMLRFLSQTKNSSISSD >gi|333606354|gb|AFDH01000056.1| GENE 204 231859 - 232113 218 84 aa, chain + ## HITS:1 COG:no KEGG:PPE_03790 NR:ns ## KEGG: PPE_03790 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 1 69 1 69 75 79 68.0 4e-14 MEKENAPLPISDEEFLHLVRLSKDGDPEAMLRLLQVFEDDILKISRYIRMSREDAVQSIV TDFIALVKQSDDVSPTSGENSDKT >gi|333606354|gb|AFDH01000056.1| GENE 205 232321 - 232794 521 157 aa, chain + ## HITS:1 COG:no KEGG:Tthe_2043 NR:ns ## KEGG: Tthe_2043 # Name: not_defined # Def: hypothetical protein # Organism: T.thermosaccharolyticum # Pathway: not_defined # 3 156 7 162 164 166 58.0 3e-40 MSYHIIANFSANRDNKGTLKMYDGSGALVFGPVEALGRGSNDPANNNNHANWKMTNADTP TGEYAASVIGAGTPTSSYGPYSRVNLDPTSGNALIAENNGRSGFMIHGGDASTDSSASWY PLRPTYGCIRLSNSNQNALINKIKSVGGSGKLTVNNI >gi|333606354|gb|AFDH01000056.1| GENE 206 232844 - 233953 910 369 aa, chain - ## HITS:1 COG:DR0501 KEGG:ns NR:ns ## COG: DR0501 COG0167 # Protein_GI_number: 15805528 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotate dehydrogenase # Organism: Deinococcus radiodurans # 7 360 5 367 369 331 49.0 1e-90 MIYEALVKPMLFRMEPEEAHDFVLRNLQRIQRQPGLLYLIEKLYGVREEPGLASELLGIR FPSPIGLAAGLDKDARAVPALSSMGFGFLEVGSVTPIGQVGNDRPRLFRLPDDEALINRM GFNNGGIQAMKERLESCNALKIPLGINIGKNKQTPNEKAHEDYTKCLRSLYPYADFFIIN ISSPNTPDLRKLQHGSELDELLIRITAEAERLNARHRRDKPVFVKIAPDMGGGELENMIG KIMKHGIPGVIAANTTVTRSGLIHPHREQTGGLSGKPLHRRSTEIIRSIYKQSGGTLKII GSGGIFTARDVYEKIRAGASLVEIYTSFIYKGPGINRACSSELLDLLKRDGFASLSEAVG ADHAAGSGA >gi|333606354|gb|AFDH01000056.1| GENE 207 234027 - 234677 718 216 aa, chain - ## HITS:1 COG:VC0211 KEGG:ns NR:ns ## COG: VC0211 COG0461 # Protein_GI_number: 15640241 # Func_class: F Nucleotide transport and metabolism # Function: Orotate phosphoribosyltransferase # Organism: Vibrio cholerae # 1 214 2 213 214 186 44.0 2e-47 MDPTREAFSKFVVDEGIIRFGEFILKSKRVSPYFFNFGSFDDSRKLTALGSFYASTIVRE QIEYDVIFGPAYKGIPISLTTALALFNGYGINANFAFNRKEAKAYGEGGNIIGSGIAGKN VLAVDDVLTSGRTIKDTKELIEREGGRLAAFLVALDREEKGQEGRLSALEEAALTYDVNI YSVASIRDIVAYMRTEGSREDLLDRIGTYLQLHGTG >gi|333606354|gb|AFDH01000056.1| GENE 208 234746 - 235765 432 339 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148988856|ref|ZP_01820271.1| 50S ribosomal protein L9 [Streptococcus pneumoniae SP6-BS73] # 1 298 1 299 308 171 33 5e-41 MMIHTDITECIGNTPVVSLNDELVPSGKKLYLKLDYFNPNFSIKDRTALGLVKAAMAEGK IRPGSILIESTSGNLGKSLAMLGAVYGFKVIIVVDPKVSASLLKWYQAYGAEVDMVTTPA PEGGFQRARLNRVRQLLDKYPGAFWSNQYDNPSNPAYHAETTAREIADLPVDSIVGAVST GGHLCGIGKYVKKHKPHLRVVACDVAGSAVFGQPFAPYLINGVGLSWRSANTDTSVLDAV SISSDQEAISVCRLLARDHGILMGGSGGLTVFTALAWLKHSDASSALAIIPDAGTNYLDQ IYDDEWLTAKEIKLLGRGELGERLEQKAFTNLRKQETLT >gi|333606354|gb|AFDH01000056.1| GENE 209 235767 - 236966 1147 399 aa, chain - ## HITS:1 COG:BS_ykvY KEGG:ns NR:ns ## COG: BS_ykvY COG0006 # Protein_GI_number: 16078450 # Func_class: E Amino acid transport and metabolism # Function: Xaa-Pro aminopeptidase # Organism: Bacillus subtilis # 6 395 5 361 363 133 26.0 6e-31 MLYNAQRLQAKLKEHNLAAIISTTKENIRYLTGFEPVVKTLNPYRGQCYAIVTADSPEEV HVVHSVGEIDQILDARSSIGQVVTYGTFYREHPDGGSLPVEEERLKYLSDVHKSQAGPEE ALAVLLARLNLTAERVALDEDGITAAAFGAIRDRHPQGEFVEGAALLRQVRAVKTQAEVD ALAYSADCIDYAIGQVIGELREGITEHEIAAVFSTSVAARGGLAVLPMIKAGRHAVGGQR RPSRDIRLTPGDLLWFDCDIVCDGYWADIARVFAYRTLKPEYTKYDALYKGQQEAIRQVR PGMTGSDVFQLTMDAVHEAGFPAYRRHHVGHGIGLEPYELPILAPGSADVIEEGMILSIE TPYYEFGLGALHVEDPVLVTRDESIRLTKADASLIKIVG >gi|333606354|gb|AFDH01000056.1| GENE 210 236970 - 237341 387 123 aa, chain - ## HITS:1 COG:SA0425 KEGG:ns NR:ns ## COG: SA0425 COG0494 # Protein_GI_number: 15926144 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Staphylococcus aureus N315 # 7 107 14 118 131 82 46.0 2e-16 MKRDGTRLLLVRVRDNERWYLPGGKIEEGEDPEAALKRELKEELNLDLLPESISYLRTVI GAAYKEDAQVELVCYEADWNGQIAPCSEISEAGWIEMDRHELLAPAVVDLVRAIKNETES DTR >gi|333606354|gb|AFDH01000056.1| GENE 211 237355 - 238809 1441 484 aa, chain - ## HITS:1 COG:DRA0223 KEGG:ns NR:ns ## COG: DRA0223 COG2368 # Protein_GI_number: 15807887 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Aromatic ring hydroxylase # Organism: Deinococcus radiodurans # 11 479 25 503 504 237 31.0 3e-62 MVVTAKSAADQYLERLKDRNTVYVNGAKVDVRTEPAFTGAIACMGRYYDLQEEKPEIHCF QDEEGLGAPISLLVPLTVEDLQRKGKSYKEVADLSYGMLGRTPDFINAALATLHAHSKLL GENAYTDFSANMNAYYRHVKTNNYFVGHGAINPQIDRSLPLGSQVNEYAGVKVIRYDKEG ITVTGAKMIVTLAPIADELLIFNMPGLKPGDEDYAVAFALPVDYPGVKIICRKPLVKSAY HAFDHPLANSFDEIDAYLILDEVCIPWNKVFVFKDVAKSNLFYDKTFARNHTGHQGIVRG LSKAELLTGIAVKLAGMLKLDGFVNIQEKLGEMTSYVELLRASILLSEADSAVSHEGVQT PSINAIQAIRYNFPKMYEKMVKTIQSLAAGSMLSTPHYEDFLAEELSGLGVSLSTGETDA ATRSKLLNLAWDASGDGFGQRQLVYEFFHAGDPMRIAAGHYLHYDKSGMLSMVDRVLARA NKAD >gi|333606354|gb|AFDH01000056.1| GENE 212 239072 - 239545 599 157 aa, chain + ## HITS:1 COG:CAC3198 KEGG:ns NR:ns ## COG: CAC3198 COG0782 # Protein_GI_number: 15896445 # Func_class: K Transcription # Function: Transcription elongation factor # Organism: Clostridium acetobutylicum # 3 155 4 158 158 131 52.0 6e-31 MAEEQVILTPEGLAQLEQELEELKTVKRKELADRLKTAISYGDLKENSEYHSAKDDQAFM ETRIITIERMLKKARVSDNTDTSTVKVGSIVVLNDIEFSEKVEYRIVGPAEADVADNKIS YESPLGVSLMGKSVGSIISVDAPVGVIKYELLEIRAK >gi|333606354|gb|AFDH01000056.1| GENE 213 239750 - 240652 682 300 aa, chain - ## HITS:1 COG:BS_yuiI KEGG:ns NR:ns ## COG: BS_yuiI COG2819 # Protein_GI_number: 16080254 # Func_class: R General function prediction only # Function: Predicted hydrolase of the alpha/beta superfamily # Organism: Bacillus subtilis # 11 294 31 307 314 299 55.0 4e-81 MSTVNREYAETGGSAAGVLERVTMPRSEQRTMRSRAENREYRIFIAVPEGEAPASGFPVV YVLDANSVFGTMVEAVRVQSRAPERTGVIPAIVVGIGYPTDGPFHPARHYDFTREIRLED LPFKLRAGERPEHGGAEAFMAFIEDELKPRIEETYPIDRRRQTIFGHSLGGLFVLHMLYA MPEAFQCYVAGSPSIHWNKRVLLEEERAFASKLSASGGQSTEGAADIKLFLAIGELEKSH HTGGGENASELCERLSALSEYGMVTEFKEFEGEGHVSVLPPLISRAVRFALRPEPADRQV >gi|333606354|gb|AFDH01000056.1| GENE 214 240654 - 241508 801 284 aa, chain - ## HITS:1 COG:BS_fhuC KEGG:ns NR:ns ## COG: BS_fhuC COG1120 # Protein_GI_number: 16080383 # Func_class: P Inorganic ion transport and metabolism; H Coenzyme transport and metabolism # Function: ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components # Organism: Bacillus subtilis # 1 258 1 258 269 287 50.0 1e-77 MSIIRVENLETCYEKNSVFRDLNFEVKEGEVTTIIGPNGCGKSTLLKTIGRILKQKNGNV FFRGQNLNAIPTRKIAQHIALLPQNPVAPPELKVEELVSYGRYPHRKNLNRLSPQDKEVI EWALTVTNVASFRDREIGSLSGGQRQKVWLAMAFAQDTEVLLLDEPTTFLDMAHQLEVLQ IVEKMNMERKQTIVMVLHDINHAARFSHRIVAMKSGQIIATGHPHEIITREVLNQVFHID ARIMLDPENGAPVCYGYESYLRNKAASAAGSTEPQKEAVGEGVR >gi|333606354|gb|AFDH01000056.1| GENE 215 241524 - 242546 1160 340 aa, chain - ## HITS:1 COG:BS_feuC KEGG:ns NR:ns ## COG: BS_feuC COG0609 # Protein_GI_number: 16077229 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-siderophore transport system, permease component # Organism: Bacillus subtilis # 17 318 9 310 394 336 53.0 3e-92 MPKQSFSRYMLVLLTGIGLIAIAAYTSLTNGSFDITVGDVVNTLLRIDPSPENDLVILEF RLPRIVIAGLVGMGLGIAGTVIQGITRNGLADPGILGINAGAGAAIVIFMFFFQGKLHGT GWWGIMTMPLFGLVGGLASAVLIYLFSWKNGRIDSQRLILTGIAIGAGFSALALFLTLKM DAKDFEMAAVWTSGSIYNANWKYVVSILPWLLILIPLIRRSAYTLDLFQLEESSVKSLGV NVERQKGILLLSSIGLVSACVSVSGGIGFIGLMSPHIAKRLVGVHHNRVLPVSAVIGMLL VIGSDFIAKTVFMPVELPVGVMISIIGVPYFIYLLFKAKA >gi|333606354|gb|AFDH01000056.1| GENE 216 242539 - 243546 1041 335 aa, chain - ## HITS:1 COG:BS_feuB KEGG:ns NR:ns ## COG: BS_feuB COG0609 # Protein_GI_number: 16077230 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-siderophore transport system, permease component # Organism: Bacillus subtilis # 9 335 5 334 334 357 61.0 2e-98 MKRSLAKPQWILWASPVIIVFIIVLSILYGAKQIHLQTVMDALFHFDPGNVDHQIIRTSR LPRVVGALLIGAFLAISGALMQGMTRNYLASPSIMGVTDGSAFVITLCMIFLPNSSSLDM IFYSLIGSALGVGIVFGLASLLPNGLTPVRMAIVGTVIGTFLSSVSAALSMYFQKSQNIS FWYNARLHQLEPKLILLCIPFAVIGLIAAFRIAKSITILSLGEEVAINLGQRTLLVKIVA MGAVVILTGISVALAGKIGFVGLIIPHITRFLIGIDYKWVIPCAGVLGGIFLASADVLSR FLNYPYEMPIGVVTAIIGVPFFLYLARTRGGEKHA >gi|333606354|gb|AFDH01000056.1| GENE 217 243574 - 244554 1190 326 aa, chain - ## HITS:1 COG:BS_feuA KEGG:ns NR:ns ## COG: BS_feuA COG0614 # Protein_GI_number: 16077231 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-hydroxamate transport system, periplasmic component # Organism: Bacillus subtilis # 36 325 25 315 317 297 56.0 2e-80 MKKTWVAAGLVAVTLLSSACGAQKEAAKAGGAEAAKSPAPTAAGTNETRKITYLGKEYTV PSKAERIVVAGSFESMEDAIVLGVKPVGANSVGGKFPELFKSITDKAESVGEKTQPNLET ILKLKPDVILGSTKFPPEMMEKMNKVKVTLPISHVSTDWEANLNVLAELTGHQDKAKEVI EKYKKEAAAAKEKLGASLKDKKVLAIRLRAGSIAIYPEGVFFNSSLYGDLGLTAPEEVKQ AKAQQLISMEKLSEINPDYIFIQFSEDENKEQPKVLEDLQKNPIWQSITAVKNQKVFINV VDPLAQGGTSYSKFKFLEAALPKLTN >gi|333606354|gb|AFDH01000056.1| GENE 218 244561 - 245361 707 266 aa, chain - ## HITS:1 COG:BS_ybbA KEGG:ns NR:ns ## COG: BS_ybbA COG2819 # Protein_GI_number: 16077228 # Func_class: R General function prediction only # Function: Predicted hydrolase of the alpha/beta superfamily # Organism: Bacillus subtilis # 71 253 1 183 189 167 44.0 3e-41 MESIRERGSLEQQVFQGRTLTVYTPPSYGLADKRYPVVYVNDPSDYMDSVTNQAVTRMEE LFREKKLPELILVGLEPDERLDEYTPWPAKALVESVQDFGGYGKKYLDLVVHELKPYIDG CYETLAGPAGTGMIGASLGGLISMFAAFEHPSVFVRIGSISGSFWYEGIIEYMRGHKLAD EGQRFYMYVGDQEGVGKKTIQSAMMARTRQAYTLLADSGFNGAKLRLVIGEGGQHQVPIF VEQFPEALKWIFGMDTNIFFPDTERG >gi|333606354|gb|AFDH01000056.1| GENE 219 245530 - 247164 1141 544 aa, chain - ## HITS:1 COG:BS_ybbB_2 KEGG:ns NR:ns ## COG: BS_ybbB_2 COG0614 # Protein_GI_number: 16077232 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-hydroxamate transport system, periplasmic component # Organism: Bacillus subtilis # 279 541 2 261 266 219 42.0 1e-56 MSDSLTDNEKIRPGLSAAVTDVSYKVRQVEAIKAGDGWEMDYRLIDQHVLIVVTAGEGAL KRDGSLSRLEAENIHVCLPGEVIGMKTEAGGLELTWVGFDLFYEDETGEGCRKGTWNEPQ VLPVHSLSHFSVLSEALSTYWHSADPFDRLRAQAAFLELIHSISAHMRDESPLDARSALE RTRHYIENHYQTNITIDELARMAEVSPKYYGDLFKKTYGLSVIDYLTEQRVNRAKQLMAL SQSRLKDIAHVVGYQDEFYFSRKFKQEVGVSPTVYMKNRRKKIAVHHSHLIGQLLAIHHL PYAAPLHPKWTGHYYENYRSDIPVHLSAYRYSEDWEHNIEKLRETKPDLILSMDTLNPGE KERLEQAGKVLYIPDRPADWREQLLLIAAYLDRTAEAETWLGKYDRRVESLRGRLRKRTG EETFLLISLHKQEIRICGTRSMGDVFFHELGMKPAFNYTRDQINVPVLPEQLAELDADHI LVNVCQETETLRRWQDLQATALWRDLHAVRQNRVYEIPSDPWREYSASGHERILGEVEKL FLRK >gi|333606354|gb|AFDH01000056.1| GENE 220 247157 - 247432 104 91 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MPPLWKTSCEGTEQGKLRKVKAAYRPVQPEQWKTAQTCAVFFFIRILKERNICYNRMILI IIIIKLYLGILNPTDSGAERYSNRMGGETVE >gi|333606354|gb|AFDH01000056.1| GENE 221 247584 - 248078 156 164 aa, chain - ## HITS:1 COG:BS_ydeR KEGG:ns NR:ns ## COG: BS_ydeR COG0477 # Protein_GI_number: 16077598 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus subtilis # 1 163 233 395 395 173 72.0 1e-43 MFWTTVPLLLSSPTFHFSQKEIALFALVGVSGAVAAPVAGRLADKGWIRPATGLALAIVI ISILLPLMIQGGSTAAVATLVVAAILLDMGVSANLVLGQRVIFSLGAEFRSRLNGLYMAI FFLGGAIGSALGGWAYALGGWNAALWIGIAFPIIAMIYYTTEKN >gi|333606354|gb|AFDH01000056.1| GENE 222 248849 - 249091 101 80 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_3544 NR:ns ## KEGG: GYMC10_3544 # Name: not_defined # Def: transcriptional regulator, TetR family # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 80 115 194 194 92 60.0 5e-18 MDSPDEELRKLIRDRFEGLEQSFYELLHKGQQTGEIDPKKDIKVLSHLLLNLNHSINVIC KVKSDKKVVHDMINTVIEML >gi|333606354|gb|AFDH01000056.1| GENE 223 249710 - 250201 84 163 aa, chain - ## HITS:1 COG:no KEGG:BpOF4_03600 NR:ns ## KEGG: BpOF4_03600 # Name: not_defined # Def: hypothetical protein # Organism: B.pseudofirmus # Pathway: not_defined # 57 155 377 476 554 87 46.0 2e-16 MDKIYAENNIGETYKDIAFAIEAEYENVDISGRNVFVIKLKNSNKALSMNFTKDLGSQEA FVKNLVLACFNLQARKHYSDANEDERNDYIGDILGAIGYTIKDQTRRGSSSSGKDSGELD IFVSKDGLPFTVIEAMNLDSLSTSNINKHLDKIFSLLDRKDNS >gi|333606354|gb|AFDH01000056.1| GENE 224 251557 - 251826 125 89 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTFREKIQQLRKGASEAQSATKIIDKLKALKDSNGPNTSYRWIWELIQNAKDVVNTSGFV DIEIKFSEVNKTIEFNHNGRLFTTENIVF >gi|333606354|gb|AFDH01000056.1| GENE 225 252618 - 253100 -109 160 aa, chain - ## HITS:1 COG:VCA0382 KEGG:ns NR:ns ## COG: VCA0382 COG0454 # Protein_GI_number: 15601145 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Vibrio cholerae # 22 159 1 137 141 103 38.0 1e-22 MEIILYDKLLFIFVKESESENMNIRVASELDYPALRRIYLESRRKSFYWADIEEMTLEDF DKHTVGEYIILAEEDAKILGFASLYLPDNFIHNLFVRPDFSGKGVGGQLINASIEKMNKP IRLKCVSENQKAMKFYENNGWKKVVEEGKPEEKYWVMVYE >gi|333606354|gb|AFDH01000056.1| GENE 226 253331 - 254524 1402 397 aa, chain - ## HITS:1 COG:YPO0798 KEGG:ns NR:ns ## COG: YPO0798 COG2814 # Protein_GI_number: 16121110 # Func_class: G Carbohydrate transport and metabolism # Function: Arabinose efflux permease # Organism: Yersinia pestis # 18 363 2 347 386 288 52.0 1e-77 MNHAQLAGKTETIKDRFPLALISLTCGAFAIGMTEFVIMGLLPNVAGDLHVSIPHAGQLI TGYALGVAVGAPLLAVATHRLPQKMLLCLLMVLFILGNMVAAIAPNYGLLMGARLLTALA HGTFFGVGSVIAANLVKPHRRAAAVSIMMAGLTIANIIGVPFGTFIGQNLGWRASFGAVA VMGVISLIGILALIPVIPREESSSLARQIRALAQPRLLLVLLTGAIGCSSLFTVFTYIAP LLEQVTGYVEHSVTWILVLFGFGVTFGNILGGKLADWKLMPVMIGSFAVLALILAVFAYT IYLPAAAVVTIFIWGVAAFGVLPGLQVKIMTLAKDAPALASTSNHSALNLGNAGGAFLGG MVINQAGLSTLPWAGAVLSLIGMVLALWVFALDRKTA >gi|333606354|gb|AFDH01000056.1| GENE 227 254624 - 255178 362 184 aa, chain - ## HITS:1 COG:PH0160 KEGG:ns NR:ns ## COG: PH0160 COG1859 # Protein_GI_number: 14590098 # Func_class: J Translation, ribosomal structure and biogenesis # Function: RNA:NAD 2'-phosphotransferase # Organism: Pyrococcus horikoshii # 9 177 4 172 177 122 42.0 5e-28 MQASKKDTRLSKLMSKMLRHSPGDFGLVLDGEGFCSLGDFLTALNRVSGFEDVRPEDIQR VVRECEKQRFEIAEDYIRARYGHSHERITYEAAEPPSVLYHGTNRKAVALIMAEGLLPMS RQYVHLSEGLHFAALAGKRRGELVILEVDTALAGHKGVRFYYAGNEVWLADRIPAECCRP IADQ >gi|333606354|gb|AFDH01000056.1| GENE 228 255184 - 256608 1167 474 aa, chain - ## HITS:1 COG:PAE0998 KEGG:ns NR:ns ## COG: PAE0998 COG1690 # Protein_GI_number: 18312338 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Pyrobaculum aerophilum # 16 473 28 484 484 249 37.0 6e-66 MKENYYRQVKLPSGIVHVYAGPSLYEALDYKVFEMANNNLQIPNGVYMSYTPDVHVGVGT CIGTTAVWNSEDGYVSPSIVGSDIGCGMRVHLTNLHKDELKDLKLRKKLVRTIEKYLPVD SHTRGHFSDIRLETVVKKGLHGLPKKYIPDGYTPRKAKSLTHVESSRFGFDENSLNRLPE NVWHRSHRQLGTLGGGNHFAEIQSVEIAEENRGTAEAWGLFDGQVIVMIHSGSRAWGGSV SQLCGSDIKRMMRAEGMGTADPNLLFASLDHPLAVQYTDLMYSALNYAVVNRHLIAYAIR EAGKDVFGSKFELATLYDLMHNYAWEEDTEDEGRRVFVHRKGATRALPANHPDNPEPYAS TGHPALIPGSMGTSSYIMVGSDGGKANYHSICHGAGRIRSRSATKRLVTVDEFSASMRVG TEDEVVVNQRSLESILDESPQAYKDVDQIIESVVGAGLASVVAKCRPMAVIKGV >gi|333606354|gb|AFDH01000056.1| GENE 229 256741 - 256812 91 23 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTFTISRTQLNREVHFTGLDGIM >gi|333606354|gb|AFDH01000056.1| GENE 230 257036 - 258010 681 324 aa, chain + ## HITS:1 COG:no KEGG:Daud_1216 NR:ns ## KEGG: Daud_1216 # Name: not_defined # Def: copper amine oxidase domain-containing protein # Organism: D.audaxviator # Pathway: not_defined # 26 148 29 149 478 108 47.0 4e-22 MNRKTKTALLSALLAASFAMPANVFANDPVKVFIQNERVHFDVEPAIESGVTLVQFRPIF EELGLTVEWDSKTNTVTGRKDGLSIVLQINNKNAAVNGETKVLEAAPANVDGNTVVPLRF IGEATGNQVIWNESARQIVIRSGAERGSVDSSKVSDPYFNWTWGMSPAEVQATLNQKPYI QYTGDKDGYDFVIYHNRFVEENDSQLAFKFNSSGLTEVAYLPVLSSTYDEIYDMYGEISG TLSSFYRQNDEDYMIWSEDLAESFYKQIYGEDRRGMIEMAMGSENLAIFNQFEADTYKAS LLFTNEGTLTEPEYKMGLIYSRPK >gi|333606354|gb|AFDH01000056.1| GENE 231 258108 - 258281 296 57 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_5422 NR:ns ## KEGG: Pjdr2_5422 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 1 56 1 56 70 63 58.0 2e-09 MKIYAVLAFNGESTENVCVTPDEEKAMAFKPEDFEDCDALFLEIWEDGEKIDDYRLV >gi|333606354|gb|AFDH01000056.1| GENE 232 258371 - 259444 1245 357 aa, chain - ## HITS:1 COG:lin1641_2 KEGG:ns NR:ns ## COG: lin1641_2 COG2876 # Protein_GI_number: 16800709 # Func_class: E Amino acid transport and metabolism # Function: 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase # Organism: Listeria innocua # 95 356 1 261 267 379 72.0 1e-105 MAQGNLDALRERLDTINGQLLELLSERAEIVQEIGQEKERQGVPKFDPVREKKMLDELVA LNKGPFSHETVRHLFKQIFKASLNLQEEGQKKHLLVSRKNKSEDTIVTLGDGISVGNGKP VMIAGPCSVESYEQVRQVAAVLKEAGVTVMRGGAFKPRTSPYDFQGLGIEGLKILKEVAT EFGLKTISEIVDPAHIEIACDYIDVIQIGARNMQNFELLKAAGDVRVPVLLKRGLAATLD EFLNAAEYIVSRGNTQVMLIERGIRTYEKATRNTLDISAVPILKQESHLPVLVDVTHSTG RKDILAPCAKAALAAGADGVMVEVHPDPATALSDAAQQLNFKEFGDFYKTVTESGLF >gi|333606354|gb|AFDH01000056.1| GENE 233 259523 - 259717 71 64 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTFMTGTDRHRLRASEKMSPPKFTPEPVPDGQPQAAFSRVTRIPFVTGPKVRGPNFFHAV RSLE >gi|333606354|gb|AFDH01000056.1| GENE 234 259853 - 260965 992 370 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_5000 NR:ns ## KEGG: GYMC10_5000 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 4 370 5 361 370 345 50.0 1e-93 MTELKRCQERALEAIEAKAAAAEPHAREKAAEILREADFGALSAEELCAAVVARSRVTLN FHPDRLIAGGLTVAEGLLQDGEYRSQFETRISSGGLSAYPGGDRDRWERSLFAGAYQAES VQPCDRPKYGALNVMRYADGASPRFGSCHFRLKAGVLDRCTFTCGDSHAQPEHAGTRKVF MPVLAALLEEVRTTGSALASDVPGAGAFAARCLSAAEPASKDGLPGPGAIGGIGRALDAY IEAQIHGAIRLESDVDALVADPSFQGTATGAQLGALCEAYGIPLYWHPGFRLAAGSVPED FRGPVMPPLARRVAASFGAGAASPDVFDAAAIGRAAASLHRQPEAWADFGTPAEVLQYLK QLWHVLVRYG >gi|333606354|gb|AFDH01000056.1| GENE 235 261112 - 262071 1061 319 aa, chain - ## HITS:1 COG:BH3326 KEGG:ns NR:ns ## COG: BH3326 COG3458 # Protein_GI_number: 15615888 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acetyl esterase (deacetylase) # Organism: Bacillus halodurans # 1 319 1 319 319 463 67.0 1e-130 MPLIDLPLEKLKEYQGRNPRPSDFDEYWERALAELDSVDPQVELVPSDFKVPYAECFDLY FTGVKGARIHAKYVKPKSDGKPHPAVLQFHGYTGHAGDWLERLPYAALGYSVAALDVRGQ GGKSQDIGGIAGNTHHGHIIRGLDEHPDELLFRHVFLDTVRLARIVMDFEEVDGSRVATM GGSQGGALALACAALEPRIRKVAANFPFLSDYKRVWEMDLAKDAYAELRTYFRFFDPQHK REDEVFYKLGYIDIQHLASRITADILFGIGLMDTVCPPSTQYAVLNKLKAPVQLEIYPDF AHEGLPGMGDKQFMFLQQL >gi|333606354|gb|AFDH01000056.1| GENE 236 262179 - 263006 1056 275 aa, chain - ## HITS:1 COG:BS_yubB KEGG:ns NR:ns ## COG: BS_yubB COG1968 # Protein_GI_number: 16080167 # Func_class: V Defense mechanisms # Function: Uncharacterized bacitracin resistance protein # Organism: Bacillus subtilis # 1 263 1 264 276 338 66.0 9e-93 MNLWEVFAAFILGLVEGLTEFAPVSSTGHMIIVDDAWFQTKDLFTPQAANTFKVVIQLGS ILAVVVLMRDRFMNLLGLKKLPGQDEGGPRLNLLQVIVGLIPFGVLGVLFEDYIDEYLFS TRTVVIGLVLGAVLMLVAEWRRPVVPKTDTVDRLTYKQALGMGLFQCLAMWPGFSRSGST ISGGVLLGLSHRAAADFTFIMAVPIMAGASFLKLLKSWDSIPAEAIPFFAVGFVSAFVFG LISIRFFLKLINRIKLVPFAIYRLVLAAVIYMVLL >gi|333606354|gb|AFDH01000056.1| GENE 237 263022 - 263756 795 244 aa, chain - ## HITS:1 COG:MA0852 KEGG:ns NR:ns ## COG: MA0852 COG1277 # Protein_GI_number: 20089736 # Func_class: R General function prediction only # Function: ABC-type transport system involved in multi-copper enzyme maturation, permease component # Organism: Methanosarcina acetivorans str.C2A # 68 242 83 256 258 58 24.0 8e-09 MVNLLYTELLKLKRAKMFLVSVIGAAAAPVLMFIGFLNMKSEKPETSVTYEISFYNTNMY VLLLSGTLLYGVITAYLFNREYVEDTLKNLLTIPVSRTSLLFSKLLMLLIWIIALTLISW GFTFVFGLIGGFDGLTIHVILYSLGRYLIGAVLLFLLSTPSIFVTFWFKNYVPTIIFTAI ATMANVALVDKKYSALFPWSAVHVVANKAYVPEYPVLYSVLVILAASIAGLAATIIYFNK SDIQ >gi|333606354|gb|AFDH01000056.1| GENE 238 263749 - 264669 324 306 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 10 300 10 302 311 129 32 2e-28 MSAIIRTTGLTKTYGDQKAVDRLDLTVGQGQIYGFLGRNGAGKTTTIRMLLGLIKPTEGQ IELFGENLFKHKRNLLRRVGSIVEHSGFYENLTGAENLLINARLMGVHKKTAIQDALEIV SLHQEPKKLVGQYSMGMKQRLGIARAVLHHPELLILDEPTNGLDPIGIKEIRRLIKSLAE ERKMTILISSHILPEIEQLADQIGIVHQGRLLEEISFEELRKRNRKHLEFQVSDDNKAAM LLEKELDIHDYEVRGEGKIRVYSHIGRQAGLNRLFVENGIDVSRLTISEDRLEDYFIKLI GGGTIG >gi|333606354|gb|AFDH01000056.1| GENE 239 264752 - 265807 1028 351 aa, chain - ## HITS:1 COG:CAC0317 KEGG:ns NR:ns ## COG: CAC0317 COG0642 # Protein_GI_number: 15893609 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Clostridium acetobutylicum # 72 334 227 491 498 151 31.0 2e-36 MKKDPVKLLGTIHLILLAALAGLTAVGTPSALTSGVLFAALFASAAGLLMSRFRYTARLR DINRQLARALEGNVNTRILANDDPALNEVIFSVNELIGQLDKLQVYTIKTETGRKRFLSN ISHDIRTPLTSIIGYIDALRDGVAGSEEQKRQYLDVLARKSGALKKLIDEVFLLAKLDAD ELRLQPVRLDLAETVRESVIEFLPELHQAGLELVLRLPEEACPVVADRVSLLRLLNNLIQ NAVKHGADGNKLGLELSSAEGKYCLTVWDNGAGIPAEELGLVFERMYRTDASRSRAGGGS GLGLAIAKALAEKHGGTLGADSERGVRTAFYLTLPETGKGLQPADDILRNN >gi|333606354|gb|AFDH01000056.1| GENE 240 265804 - 266520 769 238 aa, chain - ## HITS:1 COG:BH0820 KEGG:ns NR:ns ## COG: BH0820 COG0745 # Protein_GI_number: 15613383 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Bacillus halodurans # 6 234 6 231 234 215 48.0 6e-56 MTGIHILIADDEKEIRELLKTYLERETYMADTAHNGEEALRLAEERDYSLIVLDLMMPIV DGIEVCRRLRQTSNVPILMLTAKDQEVDKLVGLSIGADDYITKPFSIHEVIARIKAHLRR YKVLGSENSENSPAAETALTSGDLKLDPKTFTLTKDGEEIALTAKEFELLKFFMTNPEQV FTKTQIFRQVWNSDYLEDDNTVMVHIRKLRKKIEEDPSDPKRIVTVWGIGYKFAGERI >gi|333606354|gb|AFDH01000056.1| GENE 241 266739 - 267653 942 304 aa, chain - ## HITS:1 COG:BS_appC KEGG:ns NR:ns ## COG: BS_appC COG1173 # Protein_GI_number: 16078205 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Bacillus subtilis # 36 303 32 300 303 244 46.0 1e-64 MALTEWKLGETNFRNGTAETEAESDSPRPWRQALRKFRRHKLAAAGSVVTLLLIAAALLA PVIVPYDPKEVTGVFSAAPSAEHWLGTDQVGRDVFSRLVYATRVSLIVGFASVFLYVTFG TLVGLISGYFGGWLDMAIMRITDMFMAFPFLMVILVVVAVLGSDMRTIILVLALFSWPGV ARLVRGSVLTIKRLDYVRAGIALGYGTPRILLQHVLPNAAGPVIVQATFGVASAIMSEAG LSFLGMGVQPPTASWGNMLTDAQSLTVLTEQPWLWIPPGAMILLLVLSINFVGDGLRDAL DSQP >gi|333606354|gb|AFDH01000056.1| GENE 242 267666 - 268619 282 317 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|167855436|ref|ZP_02478201.1| 30S ribosomal protein S21 [Haemophilus parasuis 29755] # 1 311 1 310 320 113 25 1e-23 MLPYTIRRILIAVPVLFGITVINFFLINMAPGNPVDMLIDPTMPKELLDARKELLGLNDP LWMQYAKWLGGLLHGELGYSFSSYAPVSTLIAERLGPTLGLAAASLALGLLIAVPVGIVS AVRQNTKFDYVMTGLSFVGTSIPQFFFGLSLIYIFAVQLRILPTGGMYTLGAGGGVWDLI RHMILPVFVLGVFIAGKKVRYVRASMLDVLKQDYLRTARAKGLHPFIVTNKHALRNALIP MITVIAMEIPLLLGGSILIEQIFQWPGIGQLTIQSILSRDYPTLMGLNLAAACIVLATNL LTDLLYSAADPRIRYNG >gi|333606354|gb|AFDH01000056.1| GENE 243 268669 - 269688 791 339 aa, chain - ## HITS:1 COG:BH0027 KEGG:ns NR:ns ## COG: BH0027 COG4608 # Protein_GI_number: 15612590 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, ATPase component # Organism: Bacillus halodurans # 15 329 5 323 338 375 56.0 1e-104 MSGRPEVTAADDVPLLKVEHLKTYYPVKSGVFSRTTGYVRAVDDVSLTIRKGETLGLVGE SGCGKSTIGRSIVRLENPTSGRILFRDEDITTKTRRQLKPVRTRLQIIFQDPYSSLNPRK RVSELLSEPFIAHNLADKKDIPARVGRLLELVGLPRGSGNRFPHEFSGGQRQRIGIARAI SFEPELIVCDEPVSALDVSIQAQILNLLGDLQKELKLTYLFIAHGIGAVKYISTRIAVMY LGKIVEIGSKEELFRNPKHPYTRILLNAYPPPDPEARSAGRILIRGDVPSPEHPPSGCRF HTRCPYVRDLCRTAEPPLGAEAHAAACHFPLDEPAGHLF >gi|333606354|gb|AFDH01000056.1| GENE 244 269685 - 270695 904 336 aa, chain - ## HITS:1 COG:BH0350 KEGG:ns NR:ns ## COG: BH0350 COG0444 # Protein_GI_number: 15612913 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component # Organism: Bacillus halodurans # 4 318 6 320 329 376 60.0 1e-104 MLPVLEIHRLQTVFKTGQEEVTAVDEVSFQLLPGETVGIVGESGSGKSVTALSVMRLLGR SGRIEKGDILFQGSNLALSSDSELRQLRGRDMSMIFQEPMSSLNPVFTIGEQLLEVIRRH MDFSRKEARAYAIEMLGKVGLPRAEVLMKSYPHALSGGMRQRVMIAMALACKPKLLIADE PTTALDVTIQAQILELMKQLREESGAAILLITHDLGVVAEMADRVVVMYAGQIVEEADVF TLFREPLHPYTRGLLNSMPRISGDGGQLEAIPGTVPSLNRMPEGCRFHARCAWASAVCTR EQPELTALEGGRRVRCWVSQVEGRLPEKPVRKEAAL >gi|333606354|gb|AFDH01000056.1| GENE 245 270826 - 272238 1373 470 aa, chain - ## HITS:1 COG:abgB KEGG:ns NR:ns ## COG: abgB COG1473 # Protein_GI_number: 16129298 # Func_class: R General function prediction only # Function: Metal-dependent amidase/aminoacylase/carboxypeptidase # Organism: Escherichia coli K12 # 4 464 6 475 481 325 40.0 1e-88 MGKRHLVEWLDGHEEKFEELALRIWEQPEVAYTEAYASKLQAAVLREAGFSLRSGIGGAS TAFVAEFGSGKPVIGILGEYDALPGLSQKVSAEREALVPGGPGHGCGHNLLGTAGVAAAV ALSRRIREEKLPGTIRYYGCPAEEVISGKTFMAREGVFDDLDTALTWHPGSSNMPWNVPT SALTSVEFSFKGRASHAGSFPHLGRSALDAVELTNVGANYLREHVVDGSRIQYTITNGGQ APNIVPEDASVWYFLRGSSRDHVDLLLRRLQNIARGAALMTETEVTWEIKAGAYDLNVNH TLNDLLYRQKDEAGPLSFTDEDIRLASALADTLPPDLRESALRRREELGLPAGELLPAGF VNVKPAPKTFGGGSTDVGDVSWITPVGQIITTCAPFGVQVHTWQATASFGSPIGLKGMHL ASKLLALAAYELLTDGGVLLAEARAEFLRATNGRRYVPAIPGDVQAPVLV >gi|333606354|gb|AFDH01000056.1| GENE 246 272254 - 273897 1671 547 aa, chain - ## HITS:1 COG:PH0807 KEGG:ns NR:ns ## COG: PH0807 COG0747 # Protein_GI_number: 14590674 # Func_class: E Amino acid transport and metabolism # Function: ABC-type dipeptide transport system, periplasmic component # Organism: Pyrococcus horikoshii # 63 511 56 499 597 172 29.0 1e-42 MKKRHRVTWLIVLAAFMTGLSACGAPAASPASSPNPGGEPGKGANSGEKTVYIGIVNAPI TLSQINDQGDSASDNVIALLNDSLLNLNEKFEFTPKLAESVETKDNQTFVVKLNPSAKWN DGKPFTTADVAFTLQTALHPKVETYFKLNFIEGLNNAGKLEEGKTEISGLKIVDDRTFEV RTKTPVDPLLFKERFGTKVFFLPKHILKDVPPEQIATHPYFQKPEVTIGAFKFANFVKGQ YTEVVKNPNYYLPPAKLDKIFIKVLPAANLVAQLQTGEIHMNSLPVGLIPITEYEKVKAL PNVELTTSNPSIPPELFFNTANISDSRVRQAFAYAINRKLIVDQLLKGQGEVIDGGIPSY HPNFNKDIQPYPYDPEKAKKLLQEAKWDTNKPIQFLIPVGNKVREQAADILVQNLQAVGL KVQVQKYDFATLIQKVRKKEFDLTIFNRDFYIEPSSYFTLYKSDSSSNYYSYKNPKVDEL ITKGETESDPAKRRQIYNELQAVIHEDVPTLAVYSEKRLLAVSKDVLVGKPRDIGMYNNT NEWDLKK >gi|333606354|gb|AFDH01000056.1| GENE 247 273915 - 274484 355 189 aa, chain - ## HITS:1 COG:BS_ytmI KEGG:ns NR:ns ## COG: BS_ytmI COG0454 # Protein_GI_number: 16079991 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Bacillus subtilis # 3 147 4 153 178 137 46.0 1e-32 MGDIFRLAEESDTGQLLTLIEGAYRAIRDLNIDFRATRADYEFVRTNMEENACYVLERDG RISATLSLKYMEEVSVYPFLFMFAVHPAEQSQGVGSRLLRYVEEEIVRDTLLSPASTLAT SRKHPWLLPFYERKGYQPFYERDLGTDDQLVFMIKNLRSGSGTDREDPVHSSGETGAERY SFPGDLKKI >gi|333606354|gb|AFDH01000056.1| GENE 248 274526 - 276601 887 691 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 374 687 11 324 329 346 54 8e-94 MAKPILEIDRLRVEFTKENESLTALSEVSLHIRPGETLCLVGESGSGKTILSKAILRLVE FEGGSITHGTIRLGQEDVTRRPQKQMGGIRGRKAAMVFQEPMAAFDPLFPVGKQIAEAYL RHNRSSYKEAWEHAARLLGKVGIPEPGLRMKQYPGELSGGMLQRAMIAMALSCAPDLLIA DEPTTALDVTIQSQILTLLKEIQKEYGMSILFVTHDLGVAAEIADRVAVLYAGGIVEIGE ADALLRTPLHPYTKGLIGSVTGLETPRGSRLPSIEGSIPSLAEPPSGCRFHPRCPHAVQR CAQSAPPLEEIAGREAACWLAGELRQKEDAQAAEASPDIVRGRAEFTPAVIRPDAAAPPE ENTAGGISGDRTPLFSVHGLRKTYRLGGGFLRRPKGSIYAVDDVTFTIREGETFGLVGES GSGKSTLGRTLLHLEPPTEGDVLFAGKEISAMSPSELRKARKQMQVIFQDPYGSLNPRWT VGQCIGEPLAVHGTHQGKERRDKVSELLASVGLPPSAGERYPHEFSGGQRQRIGIARAMA LQPRFILADEAVSALDVSVQAQILNLLQELRERENLTYLFIGHGLHAVRHMSDRIGVMYL GKLVETAPSDELFRHPAHPYTAALLASVPRRDRSGSPERVRLAGEIPSPANPPSGCRFHT RCPGATALCREVQPEWIEVGPGHTAACHYPL >gi|333606354|gb|AFDH01000056.1| GENE 249 276635 - 277543 897 302 aa, chain - ## HITS:1 COG:FN0398 KEGG:ns NR:ns ## COG: FN0398 COG1173 # Protein_GI_number: 19703740 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Fusobacterium nucleatum # 73 298 61 286 289 225 46.0 7e-59 MKTAAEVNYMPEQLTRERSREPKQRRRIPGFLRQGDLPYYAALLIVSAIALSAVVPQWLA PYPPAEMNADALLQKPGAAHWFGTDYYGRDMLSLLIYGARDSLLIGAGSVLIGGAAGMLI GSLAGYIGGFADGMLMRIIDVLMAIPGLLLSLAIAAALGPSLLNIVLAVSVSLVPKFARV VRSQVISIKSRPYIAASRSIGAGGGHIFVKHVLPHVFSPLLVMATIGIGSSILVGSALSF LGLGVLKEIPDWGTLLSQGRGYLTVAWWNATFPGLAITLLVLAVNLVGDRWRDALDPKRL AK >gi|333606354|gb|AFDH01000056.1| GENE 250 277587 - 278513 933 308 aa, chain - ## HITS:1 COG:FN0397 KEGG:ns NR:ns ## COG: FN0397 COG0601 # Protein_GI_number: 19703739 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Fusobacterium nucleatum # 1 305 1 304 308 233 45.0 5e-61 MIYAIARRLVSSLLVIGGASVLVFFILYLLPGDPVVMMLAGTSASAETAANLRHQLGLDQ PVIRQFLVYAENLLRGDFGKSLVNDDPVLPKILEQFPATALLTAAGTFLAVVTGIWLGVL SAVHRNSFIDFLARIVSLFGISMPTFWSGILLILVFSVRLNWFPAVGSEGWESLVLPAAA LGLVGSGFIVRMVRSSMLEVMNEPFITTLRSKGLSERVVMYRHALRSALIPALTMIGIQI GELIAGAVVIETVFSRQGIGRLLAGAILSKDLPVVQGVVFFTAIVYVLVNVLVDLSYAFI DPRVRRAV >gi|333606354|gb|AFDH01000056.1| GENE 251 278529 - 280199 1478 556 aa, chain - ## HITS:1 COG:BH3644 KEGG:ns NR:ns ## COG: BH3644 COG0747 # Protein_GI_number: 15616206 # Func_class: E Amino acid transport and metabolism # Function: ABC-type dipeptide transport system, periplasmic component # Organism: Bacillus halodurans # 12 535 11 538 557 222 30.0 1e-57 MISSRRNFHKAVLTALILVIVSGCGGNAGNTGSAIPPASENGAAGQPSAVQGGTFTYALA GSPSGLDPNVVPAALDYRVMRSIYDSLVVQLPDQSIKPWLAEEWTVSPDGKEYTFKLRKD VKFHDGTPFNAAAVKANFDRIVNPATKSRFAVTLLGPFESSEAVDEYTVKVRLKSPYSAF LSSLSQAFLGIVSPAAAEKYKDQLTKNPVGTGPFKFVSWTENSAVTLQRNPDYKWAPELA ANKGAPYIDKLVFKIIPEEATRIGSVQSGQVSAGETVPPQNFVSLKNDPNVQLFQAESSG IPYTLMLNQDHAPWNELEARKAVQLSIDFDAIVKTLYLGAYTRAWSPLTPSVLGYNPSLE GALKPDPNEAGRLLDGLGWIKGADGIREKNGKKLTIRYIDASPNREKRNDIAAMIQQQLK KAGIAVEVEILADTTTALMVKGTNDLVGVSNVSGDPDILRSFFHTNAIPKDGKWGHNHTH KSDPTLDAWLEEGLREQDPKKRAEIYKQVQSYLIQNAYGFPVYVFPYTVAAGKNVSGLKF DSLGYPLFYDVSLKKS >gi|333606354|gb|AFDH01000056.1| GENE 252 280463 - 281758 1077 431 aa, chain - ## HITS:1 COG:BH3482 KEGG:ns NR:ns ## COG: BH3482 COG0477 # Protein_GI_number: 15616044 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus halodurans # 1 415 1 409 413 332 43.0 7e-91 MTNFLNEWKTQLLEYSRNIRLFFVFIFVWNTGLGMFGLVYNLYVRALGYDQTMVGQLVGM TAIASAIILIPAGIMNDRFGPKRIVSAGLFFVLLALTARSLFEFKNALLVTSFLGGMSQA VVSATIIPFMANNSTPRQRVHLFSFNMALSMFASVAGNMLGGVLTDMFQFAFGISEVLSL RTTLLIGVGTMALGLIPVLLYTSEASGEKDEREDKRAGPKPGWRQTASRHKSSLQIIALF AFLSLLSSTAGGMIVPYLNVYFEDRFDASKTMIGFIVSLGQGATALAFLLGPAIARKIGE ARAVVLLQLSSIPFLLITAYSSNFTLASVGYLFRQALMNAANPFYSTIKMKYVDRSMRGL ASSSGEAMFNLGWFLASPVSMGLVAMYGSYYGYAYAFSITAVVYTVICILFHVFFGKERF KPVEEAEQAAG >gi|333606354|gb|AFDH01000056.1| GENE 253 281933 - 282754 709 273 aa, chain + ## HITS:1 COG:no KEGG:BMD_2235 NR:ns ## KEGG: BMD_2235 # Name: not_defined # Def: hypothetical protein # Organism: B.megaterium_DSM319 # Pathway: not_defined # 1 269 1 270 273 261 50.0 3e-68 MIQYQNGHVTVFQSAIYKTTSTVIVTDDLVLIADPNWLPREIEEIRQHVEAVRGDRPVYV LFTHGDFDHIIGYKAFPGAVTIGSEGLLSHPDKEKKLALITSFDAGHCIDRGYPVEFPHV DIAAAGNGQVFQLGETRLTFYLAPGHTADGLMTVVEPLGILIAGDYLSDFELPFIYDSAK AYERTLDTVRHIYGAHNLELLVPGHGQATGDVREMERRLELADRYLASLIGAVQADDDNA LLALRDAHAYRSAFTDGCHDENVRIVRSEYAGG >gi|333606354|gb|AFDH01000056.1| GENE 254 282844 - 284019 1340 391 aa, chain - ## HITS:1 COG:BS_ydhL KEGG:ns NR:ns ## COG: BS_ydhL COG2814 # Protein_GI_number: 16077647 # Func_class: G Carbohydrate transport and metabolism # Function: Arabinose efflux permease # Organism: Bacillus subtilis # 13 346 51 385 425 153 30.0 6e-37 MQKVLLLTIGMFALGFDAYVVAGLLPAIGSDFAISASQSGQAVSVFTLCYALAAPVFATI LAGKPVRRILLLALVVFTLANAGTALAPTYTLLLLSRAIAGIGAGLYSPLAAAAAAALVS SEKRGRALGMTLGGMSMGTVIGVPVGLLIAEQIGWRGTLWAVTALGVIAIIGITAWFPNF PAAAPPSLRQRLAMMTNGRVAATVGITFITSVASLGLYTYVASVLQDLADVQAITPYLWA WGIGGVIGSFSIGTLIDRTGRPGLLMTVILALMALAVFVLPVGIHYTLAAFVAFVVWGAT GWASQAPQQHVLLVLQPEHGPAAVALNSSANYLGSAVGSAFGGAVLLAGLAPGQLPIAAG ALIAAALLGQIWIVSRSRGFAKAGREEKIQS >gi|333606354|gb|AFDH01000056.1| GENE 255 284064 - 285143 1050 359 aa, chain - ## HITS:1 COG:no KEGG:MDS_2893 NR:ns ## KEGG: MDS_2893 # Name: not_defined # Def: putative oxidoreductase # Organism: P.mendocina_NK-01 # Pathway: not_defined # 1 359 1 356 356 352 50.0 1e-95 MNVLIIGLGYAGTRFSQAFSNLDPAVTGNEPVEIAYVNRSPKSNGYRYFSDIETALKEFE PAVVVVSVNDEYHIDVIKQLRGYRGFVICEKPLVHPQDDLDEVEASLKHTSGFALDLVER YSDASITLKQYVKDHNLRLVRANFYWGKDRINDHRPTSGVISEIIHPLDLVQWVSGGDAE LELKDLQGIRSDFSISGTAVLDSAAITANLAGAVVTGYSSFVNILRKREVDLVFASPANK LIFATMIFDTPVWDIDYLRIWEKTNTGERVIVDLKTEIDESRPELNTIRKLIRLVGDAAG FAASGAEPSQPFADLPSSLKLQKLLNRIDADARTIGPVQYVVGSEREFFNDETNWERLG >gi|333606354|gb|AFDH01000056.1| GENE 256 285164 - 285661 509 165 aa, chain - ## HITS:1 COG:no KEGG:MDS_2892 NR:ns ## KEGG: MDS_2892 # Name: not_defined # Def: acetyltransferase # Organism: P.mendocina_NK-01 # Pathway: not_defined # 9 164 8 163 167 129 41.0 6e-29 MNTSLTLRIRRASLEDIGELVELRKILLSRGEGHYVSHSAEEDLAWQSEYRNWLRANLTG NDRILVAAASLDDEERICACAIGIIDDRAPMKGCLNGKVGWIQTVVVHPDKRRHGLGEGI MNYVLSWFRANEVGKVTLQTTPSAKRLYENLGFSESGEDLLIKEF >gi|333606354|gb|AFDH01000056.1| GENE 257 285728 - 286945 1224 405 aa, chain - ## HITS:1 COG:mll5695 KEGG:ns NR:ns ## COG: mll5695 COG0156 # Protein_GI_number: 13474740 # Func_class: H Coenzyme transport and metabolism # Function: 7-keto-8-aminopelargonate synthetase and related enzymes # Organism: Mesorhizobium loti # 2 398 3 399 425 416 54.0 1e-116 MYTEIAESKLNQLKESGQYREFVTINRLRTKYPMALVDNQGDHPVVVWCSNDYLGMSQHP VVIEAMHKAIELYGAGSGGSRNIGGSHHYYAELEASLAEWHGKEAALVFPTGYGSNDATL QCLARIFPDSIIFSDALNHASIINGIVSSKTEKAVFRHNDVQHLEELLAAQPADRAKIIV FESVYSMDGDIAPVREIVRLAKKYKALTFLDEVHAIGMYGPRGAGIAAQLGVADSIDFIQ GTMAKGIGIIGGYITGSAPLIDSVRSFASGFIFTTSLPPAVVAACYASVEHLKRSDAERG ALHAKTALLRNVLAEAGIPVMESSETHILPVLVGEAKKCKLAARRLLEKHHVYLQPINSP TVPVGTERFRVNVTPNHTEEHIYELVNALTEVFEYFDIKTLALKA >gi|333606354|gb|AFDH01000056.1| GENE 258 287354 - 288250 626 298 aa, chain - ## HITS:1 COG:BS_ytlI KEGG:ns NR:ns ## COG: BS_ytlI COG0583 # Protein_GI_number: 16079992 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus subtilis # 1 296 1 294 308 175 33.0 1e-43 MDFKTLKSFQKIVEHENFARAAEELAYSPSTVTTQIQKLESDLGVLLFERGKKIALTEAG RLFYEQSIPILKSMEQLQKTLGDLASGEAGHVRVGVTEPTASHQFPRLIRRFTDVYPNIR ISVEIAGTSVLTDKILKGELDFGLGSFPDSAAQLHFEPLFTEEFLLLVPQDHALARAESD SVTLGQLRETRLLITAQSCPYRRKLETALREEGSFPPDTMEIGSMSALKHYVAEGLGAAL VPRMVLDPLPEGTLALPMEGSGINMTCGLICRSADLPLKRAGKNLYDFLLHEFTRQKG >gi|333606354|gb|AFDH01000056.1| GENE 259 288385 - 289125 186 246 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 3 232 1 226 242 76 30 2e-12 MFMQNKVAWVTGGGTGIGRATSLELARRGAIVAISYSQSGEDAESTVRRIAEEGGRAAAF KANVTRESEVRELAELIAARFGSIDLLVNNASVTRHIPMSDLDAATEEVWDELYAVNVKG MFTCAKAAAPRMKKNKSGAIVNVGSIAGLTGLGSSIPYAVSKAAVHGLTKSLAQALAPEI RVNCVAPGAVATRWWKGREETMNALIGKLPLQRIATPEDIAQIICSLLEQEAVTGQILTA DAGQTL >gi|333606354|gb|AFDH01000056.1| GENE 260 289506 - 290486 40 326 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|169347130|ref|ZP_02866072.1| ## NR: gi|169347130|ref|ZP_02866072.1| hypothetical protein CPC_2628 [Clostridium perfringens C str. JGS1495] hypothetical protein CPC_2628 [Clostridium perfringens C str. JGS1495] # 22 286 23 289 320 86 30.0 2e-15 MFVLNFFEMKNSMDAAKGLANYFDVDIESVLNRIDKNYNLIDLIEDLKIDLNYTYHPETL LTCRHATTTNDNLYSIRNKGLLNLKRMLEEETTLSTFLFSYGISINVSEKKFIYKNQVFP IYSYRKNNIEEEYKRCNSYDLYETNPTLKDDYYHKAMDLLYLKLYYDDCETEVFLDGDLK KIYDYDSVRYSPEILNTIENIVKYLDNVPLFYLQDSWAKKENCKYYILEFDVPIDCFVNS TIHSTFDRFGEISDIAELFGYTEWQYEDGLIDNTFFNNLFILKNLISKIIEDYAHTFGQI ASSTIIDGHKIRTIIEHDVKEKTLYD >gi|333606354|gb|AFDH01000056.1| GENE 261 290802 - 291296 122 164 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|298372594|ref|ZP_06982584.1| ## NR: gi|298372594|ref|ZP_06982584.1| hypothetical protein HMPREF0156_00638 [Bacteroidetes oral taxon 274 str. F0058] hypothetical protein HMPREF0156_00638 [Bacteroidetes oral taxon 274 str. F0058] # 23 151 3 129 149 66 36.0 7e-10 MGIFLKITSDSYGGETVEKADINNKVLHYITDALNDYVWQDSIAPKLRKINAQYSHITLG TILRFYLLRYIEVGNLKSFARYIKKDDKLIIDQMLVLNKYETLSEDETRKTLCDDIFLYF KEIILKYKDRFQDFDAVMFIPLLEERFEEIKEQKFISNRNPTKI >gi|333606354|gb|AFDH01000056.1| GENE 262 292066 - 292245 141 59 aa, chain + ## HITS:1 COG:no KEGG:CKR_0415 NR:ns ## KEGG: CKR_0415 # Name: not_defined # Def: hypothetical protein # Organism: C.kluyveri_NBRC # Pathway: not_defined # 2 55 5 58 120 82 68.0 5e-15 MINVYVDDLRDCPIGFVVARTFQEAIHLLETHEVDILSLDHDLGEDLQGNLLPTGKAHY >gi|333606354|gb|AFDH01000056.1| GENE 263 292567 - 293385 265 272 aa, chain - ## HITS:1 COG:CC0223 KEGG:ns NR:ns ## COG: CC0223 COG0596 # Protein_GI_number: 16124478 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Caulobacter vibrioides # 13 152 9 140 260 68 35.0 1e-11 MKRFSQMALLMVVILLLSVTTAFAQTSKVDVGSGLDLLIDVQGTSVPGKPTVVFDSGAGD DHAVWQTAYVQQQIAHSTLTVSYDRAGRGQSDDDANIAKDAETKAAQLHALLHNANIPGP YLFVSHSISGVFARTFAALYPGEAAGIIFVDSTHENVVQEYGEDFIRGDLEYSDEFAWTD WLTIDQQIRQLNAQDALRNIPITVLSANCHGVCNEQNPGSLFDETKWASLQNKIAALSND VVHTTVDSGHYIQLNKPQAVISAIHAMFTRIN >gi|333606354|gb|AFDH01000056.1| GENE 264 293605 - 294471 538 288 aa, chain - ## HITS:1 COG:BS_yhjM KEGG:ns NR:ns ## COG: BS_yhjM COG1609 # Protein_GI_number: 16078120 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 1 288 43 329 329 344 57.0 1e-94 MNYTPHFLARGLRTNSSKLLAVSVPKADHPFFAGLIKGISLQALEFNYKVCVFQTFYCKE NELELMKLLQNREVDGIILGALENMWDDIAPYLKRGPILMCNEFHETAPVPILCYNEFES GYTAVRHLIERGYRDIGFCFDTANSAAQNMRKKGYLAALSDHNLPYREEWIFDGAFSILD GIRIMDRIHHLPEKKPTALFSGSDQVAAGLIKQAVNLGYSVPGDLAVIGYDNQPICRVTT PTITSIDIPVEQLGRQAVTRLLACLTEELPLKREVTLFPTALVVREST >gi|333606354|gb|AFDH01000056.1| GENE 265 294702 - 296033 802 443 aa, chain + ## HITS:1 COG:BS_yhjL KEGG:ns NR:ns ## COG: BS_yhjL COG0399 # Protein_GI_number: 16078119 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis # Organism: Bacillus subtilis # 72 441 66 435 441 510 63.0 1e-144 MLTTKNKYWGTSKDYLHLLDRIKTGRDVEPDCFENHLVNTQLIEKLYISGRENTINTWIR SLFPALSEFRGKVDFLPVNRLISAEEVEAILAVMRVVLPTGQFTSGPYVNRFEEILSGYL RKKYIIATSSGTDAAMVALLALGLRPGDEVIMPANSFAATENAVLAVGGIPVYADIDPHT YTLDPASTEVAITPRTRFILPVHLYGKKANMASLRELADRYRLKIVEDACQAIGVTELGR EGDALILSFNPYKNVGVCGKGGAIALDDEEAAQRCMQFSYHGFEVNVKNRKVRDFGYNSR MDNLQAAIGIERMKHLSLNNFKRTVLADRYRQGLQSLADSQKIRLPELSDDHVWHHFPIQ ILSADRDLVRRELMDKYSAETDIYYPVLSHRQNTPFVNVRYKDARLPQTEQTHSRLLHLP MYPHLTWEEQDHLMEGLRRVIGV >gi|333606354|gb|AFDH01000056.1| GENE 266 296017 - 296874 735 285 aa, chain + ## HITS:1 COG:BS_yhjK KEGG:ns NR:ns ## COG: BS_yhjK COG0561 # Protein_GI_number: 16078118 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Bacillus subtilis # 3 279 7 278 286 321 55.0 9e-88 MLSEYKDNFIRLEHPLKPKHLVFCDFDETYFPHVLLNEHRRELEELEAFIERKSREGELM IGWVSGSKLEDILRKMSGGKFRIFPHFIASDLGTELTYVTQERYGVRDEQWDLRLESSGF SEEAVKTLVRELSQEYDVDLTPQTQLGSSRFKWNFYYRQRDPLTDLHTIKHIRDLAGRYR VDVNINRCNPLAGDPEDCYDVDFIPLGTGKAEIVRFMLERYGVQPEHAFAFGDSGNDLLM LQAVRHGYLVHNATEEAKGLHPLVSEGAYVKGILHVLKEHLQAGA >gi|333606354|gb|AFDH01000056.1| GENE 267 296937 - 297992 949 351 aa, chain + ## HITS:1 COG:BS_yhjJ KEGG:ns NR:ns ## COG: BS_yhjJ COG0673 # Protein_GI_number: 16078117 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Bacillus subtilis # 16 337 16 336 350 410 59.0 1e-114 MIKIGIIGAGNIAMTHAKALSTVKEAVLTGVHDIHQPAGERFASTFGGQAFERYEDLLDS SDGIIVASPNFKHKEHALQALAAGKHVLCEKPMAITLEEAQVMRDYTEKAHAIAMMGFNY RYLSFVHILMEFIRNGGHGGIISFNISFKKDSALRKKTFTWRDSEASKQTSGALGDLGIH LIDMIWYLFRSDFRPESIRVKMATHVKEKENREVQVDDYSEILGQLRNQVFIHMVTSKST VPEECGFGIEVIGHRKNFHYHTRNPLSYTITEGISSASFDLPPALLTDPAGEFHGWADSF RIEQMAWVDAILRKSRMGLPSFADGYRSQATLNLFFETHAKDLSGTLVMQA >gi|333606354|gb|AFDH01000056.1| GENE 268 298028 - 299227 1001 399 aa, chain + ## HITS:1 COG:BS_yhjI KEGG:ns NR:ns ## COG: BS_yhjI COG0738 # Protein_GI_number: 16078116 # Func_class: G Carbohydrate transport and metabolism # Function: Fucose permease # Organism: Bacillus subtilis # 1 385 2 385 401 234 39.0 3e-61 MRIVLWMGCAFYFLVGVVHVFIGSLSPHFFARYDIGAQEISVILSVQFIGFLIGVLFSPV LSKKIGPFVVITIGLSMVGAALAGYLWIDRWELLSLTGFLIGYGAGTLETTVGALIIAQG ENGKAGMAKLEVFFGFGALLFPILIHVLAGEDVLPLVLYSLLSTIAVLLAAWVSLISVVR PKQRFPQPEGAGSGTEEFFPESGLMRGEKRSLSLLILFAFVYAGIETSYANFLPSLMIVG GFESYSLIGVSVFWASMVIGRTVLAVKGKKIPPLPMLQISALCLILLLGVFPFLHDAILA LGVIFLTGIAASPLFPVAITFAASVKRGYVDEVTSYFIAAASLGGSLISLLIGWSLALEE LSVTLFLFAGLALLLWFISFRLRDTGNSFYKHAGKSMDR >gi|333606354|gb|AFDH01000056.1| GENE 269 299389 - 301104 250 571 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 349 557 147 354 398 100 33 6e-20 MIKRFFAYYRPYRGLFILDFGCAVIAGLLELGFPLAVNLFLDKLLPSGDWSLITWACIAL LVIYLLNMVLNYVVTYWGHMLGVNIETDMRKKLFDHIQKLSFRFFDNNKTGHLMTRITND LNEIGEIAHHGPEDVFIAIMTLIGAFLLMLSIHTKLALLTFIVIPLLAWFAIYFTKKMTR TYERLFGNVAEFNSRVENNISGIRVVQAFANEEYEKNLFKGTNQQYRQTKLLAYKLMAKS MSISYMMMRFVSLFVMLCGTYFVIQGELSYGQFVAFLLLSNVFFRPIEKINAVLESYPKG IAGFKRYISIIDTEPDVADGKDAVSVDKLKGDIVFDSVTFGYHDQKNILDKLSLNIRAGE TIAFVGPSGAGKTTICSLLPRFYDCKSGAIRIDGMDVRDMTLESLRNQIGIVQQDVYLFE GTIRQNIAYGKLRASEEEIWEAARQAQLEEFILKQPDGMETMIGERGVKLSGGQKQRLAI ARIFLKNPPILILDEATSALDTATELAIQQSLTELSKGRTTLVIAHRLATIKNADRIIVV TERGVAEEGSHKELVAAGGIYSGLHKAQFGV >gi|333606354|gb|AFDH01000056.1| GENE 270 301706 - 303052 1137 448 aa, chain + ## HITS:1 COG:lin2611_1 KEGG:ns NR:ns ## COG: lin2611_1 COG3397 # Protein_GI_number: 16801673 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 19 304 8 292 294 211 46.0 2e-54 MSTVRISRSVTTRILFAAGLSLILAVCMLLLAQKASAHGYVESPGSRAYLCKQGTNKDCG AVVYEPQSLEYAKGFPAAGPADGKIGSGGGTFPKLDEQSATRWSKVNISSGTNTFTWKLT AAHATTSWKYYITKANWDPNSALTRNSFDLTPFCSVNYGGKQPPFSYSDTCNVPARTGYQ VILAVWEIADTANAFYNVIDVNFGGSNPSDTVAPTAPSGAAASNVTTTGATLTWGASTDN VGVTGYQIYNGSTHVTTTSGSATSYNVTGLTPNTAYTFTVKAVDAAGNTSPASNSVTFTT GSAPVDNQAPTAPAGLTAGTASSSSVVLSWNAATDNVGVTGYRIYKGTTLAGTVSGSTLT YTVSGLTPSTAYTFTVRAIDAAGNESANSNAVSVTTTSGPAVAAWAVNTAYTTGNLVTYN GSTYECRQPHTSIAGWEPSNVPALWQLK >gi|333606354|gb|AFDH01000056.1| GENE 271 303233 - 304180 746 315 aa, chain - ## HITS:1 COG:BS_yofA KEGG:ns NR:ns ## COG: BS_yofA COG0583 # Protein_GI_number: 16078903 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus subtilis # 1 279 1 278 285 308 54.0 1e-83 MESGDLKIFRTVAREGSITKAAHILNYVQSNVTNRIQLLETELGTQLFYRSSKGMKLTAA GQNLLGYADKIVVLLEEAVKSAQATDIPKGPLRLGSLETTAAIHLPQLLTRYHGLYPEVE LSLITSDSHQLIRKIKDYELDGAFVYGPVSQEELECQPAFEEELVLISEPKETDLAELLK KPLLFFGSGCSHRDRVERLLVKEGVEARHMIEFGTLEAIIGGVSAGLGVSLLPRSSISRI VQAREVYLHPIPEEFREINVVFIYRKDLFKTEAFKRFLDFLRSEGTGGVETPAAAASGAS SAPGPGPADNQPAGS >gi|333606354|gb|AFDH01000056.1| GENE 272 304321 - 305328 715 335 aa, chain + ## HITS:1 COG:BS_yogA KEGG:ns NR:ns ## COG: BS_yogA COG0604 # Protein_GI_number: 16078904 # Func_class: C Energy production and conversion; R General function prediction only # Function: NADPH:quinone reductase and related Zn-dependent oxidoreductases # Organism: Bacillus subtilis # 1 327 1 327 329 382 56.0 1e-106 MKAVLHREKSGVDGLVYSTAEDRHPGYGEVKVKLIAAGLNHRDLFVINDRNAGDRPLIPG SDGAGIVTEIGEGVSPDLLNLEVALNPTLNWKKADSLPEDLQIIGSPSDGTFADFIIVPA ENAVAKPSHLTWEEAAVLGLSALTAYRALFTRGGLKAGQHVVIPGIGGGVATIALQMAKA AGARVSVSSRSEHKLELARQLGADFCFESGGSWKARFEETKADLVLDSIGPATFPNYFDI LKPDGRIVSFGASSGDAVELPLRALFFPQLSVIGTSMGSSEEFHAMLEFVAKHNLKPVVH KVFPMRDAVQAFAYMKEGKQFGNLTLMSGDKKVWN >gi|333606354|gb|AFDH01000056.1| GENE 273 305650 - 306924 904 424 aa, chain - ## HITS:1 COG:TM0306 KEGG:ns NR:ns ## COG: TM0306 COG3669 # Protein_GI_number: 15643075 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-L-fucosidase # Organism: Thermotoga maritima # 2 352 14 384 449 153 31.0 5e-37 MSTREQRTRWFLQDRFGMFIHWGLYSIPARGEWIRGNERMSYEQYQVYFDEFDASRYEPK KWAKAAKAAGQKYAVLTTKHHDGFCLFDSKLTDFKATNTPAGRDLVREYVDAFREEGIMV GLYYSIIDWHHDDYPGYGDKAHPDRDNEAAKNKPIDFDRYLDYMHGQVKELLTNYGKIDI MWFDFSYDDMTGEKWRATELIRMIRSIHPDIIIDNRLGGNIRAAEPEEYAGDFFSPEQII PPGGIVDEKGEVVPWEACITLNDNWGYHAADKNYKSAKQVIRTLVECVSKNGNLLLNVAP DAKGEINRETLEVLDEVGEWLRLNGDSIYGCRAADLPKPEWGRYTQNGNRLYAHVYDRGI GPIYFEGLKGKIEKARLLRDGTELKVEVPWMALEYSDIENGAFINLAGSRLPDESDTVIE LHLR >gi|333606354|gb|AFDH01000056.1| GENE 274 307143 - 308090 440 315 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116517028|ref|YP_816079.1| glucokinase [Streptococcus pneumoniae D39] # 8 312 5 316 319 174 35 6e-42 MQNTDKYVVGIDLGGTKIAAALFNADGEILNRERMETANARTAEEVVQRMVEMIHSVSME HPVCGVGLASPGTVNSKDGIVLQGTNLPEWNNVPLKKWMGDALGVVVEVVNDANAAAWGE YVRGAGKGSGNMVYITFSTGIGAGIVLDGKLFLGATSFAGELGHNIVVPGGPACICGNNG CWEMYASGTAIRDSALELMLSNPSVIGELAAASGEEISAKHVFEAHRQGDPIAAQVVNRA VHYMALGLANAIHTFNPDRIVIGGGVSKAGDLLFPALKAETGKLVMKPYRGTYEIVPAGL RDDVGLIGAAALFHT >gi|333606354|gb|AFDH01000056.1| GENE 275 308441 - 309133 462 230 aa, chain - ## HITS:1 COG:lin1017 KEGG:ns NR:ns ## COG: lin1017 COG3142 # Protein_GI_number: 16800086 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized protein involved in copper resistance # Organism: Listeria innocua # 2 205 1 207 231 146 39.0 3e-35 MILEVIATCIDDALRAEENGANRLELITAVAEGGLTPGIGLIRQVVGAVQIPVHVMVRPH SRSFVYSKLDLETMIAEIQAINAAGAAGIVVGALTAEGLIDENALGVLLPWADGMQITFH RAFDELEDQLAGLQTLMRYPQITRVLTSGGLKPATEGMPAIRRLVEATEGRSLRILAGNG LTPEAAGSFIEQTGVPEVHFGSAVRYGRSGLAPIDPVQLRALADSLASYS >gi|333606354|gb|AFDH01000056.1| GENE 276 309302 - 310771 1041 489 aa, chain - ## HITS:1 COG:RC0184 KEGG:ns NR:ns ## COG: RC0184 COG0260 # Protein_GI_number: 15892107 # Func_class: E Amino acid transport and metabolism # Function: Leucyl aminopeptidase # Organism: Rickettsia conorii # 51 484 74 499 500 229 32.0 8e-60 MHITLDMTELADVLIHPVYAGESFPYALNEARKRQGTMTWLYARSAGEADVLAAGMGERC AVTLERVRRAGGAAARTLLQEGRGSATLLKHPGTVIGVGVGGRESIESAAAWLQAWIEGW LLGLYRFDKYRNVTKISGSVKLNLRSADWPELSAAGLNSVIQTAMHRAEATNLTRDWVNE TPGTLNPDAFVEWTRDLFKDRPVNIYVYRGQELTERGMNGLLAVGAGSKHAPALIELRYE ACPDAPMLALVGKAITFDMGGMNAKTGRDISDARMDMGGAAAVIGALDILVRQQAKVRVT ALIAVADNLPDARATLPSSVIAYPNGLTVQIVNTDGEGRLVLADALIHAAGLGAAQAIDI ATLTGNVGDALGLGIAGIWGDADMTRELARIGEHNGERLWPMPLMDDYESELRSNYADLR NVGTSTLAGAITAALFIRRFVDKSMNWVHIDMAGTVQYKQDVGYAEAGATGYGARLLADY AVNYARTEV >gi|333606354|gb|AFDH01000056.1| GENE 277 310810 - 311796 782 328 aa, chain - ## HITS:1 COG:BH3645 KEGG:ns NR:ns ## COG: BH3645 COG4608 # Protein_GI_number: 15616207 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, ATPase component # Organism: Bacillus halodurans # 9 325 4 321 322 420 61.0 1e-117 MIQSHTETPLVEVKGLRKSFAVKKGWFGAAKYLRAVDGLSFAIRKGETFSLVGESGCGKS TTGRLVNRLLKPTSGEVWFNGQNISNLSDNQMRPMRKDMQMVFQDPYASLNPRMKVKELV AEPLLIHTKLSVKERDKLARELLETVGLSSIHAERYAHEFSGGQRQRIGIARALSVRPSL IVADEPVSALDVSIQSQVLNLMQDLQEEYGLTYLFISHDLSVVEHISDRIGVMYLGTLVE TADKDTLYDRPLHPYTQALLSSVPVPDPNQKRERIILKGDLPSPVDPPSGCRFHNRCPAC MDICRQQEPVFREVEPGHQVACHLYNEA >gi|333606354|gb|AFDH01000056.1| GENE 278 311793 - 312794 647 333 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 5 314 11 321 329 253 44 6e-66 MTPRLLEVEGLKTEFRRDGGSVLAVSGIDFHINRGEVLGLVGESGCGKSVTSLSIMRLLK DTPGRIAGGAVRFEGTDLTQIQEKEMRKFRGNELAMIFQEPMTSLNPVLRIGRQLEEPIM LHLGYSRKRAREHAIHTLKLVGIPRAEDVADEYPHQLSGGMRQRVMIAMAMSCGPKLLIA DEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVVEEAP VQELFANPQHPYTKGLIQSVPKLRQKVRRLESIQGNVPDLSAMPPGCKFMPRCAYAMERC LQEPELLLVEGQEQRKSRCWLTQMDTPEGGDNQ >gi|333606354|gb|AFDH01000056.1| GENE 279 312809 - 313720 805 303 aa, chain - ## HITS:1 COG:RSc1382 KEGG:ns NR:ns ## COG: RSc1382 COG1173 # Protein_GI_number: 17546101 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Ralstonia solanacearum # 21 300 15 295 299 312 57.0 6e-85 MDNNTTVMGADSSGAGVTLVTKPTKGRAAEFFSKFCKQRGSLAAGIFIIFLTIIAIFGPH LTPYDPNVPDYDALMTGPSAAHWAGTDEYGRDILSRLLDGTRLTLAVSLSSVLIAAVLGT VLGLLSGYYGGWLDRLIMRGSDVLFSFPDLLLAIGIVAILGPGLSNVVIAVAVFGTPSFA RIIRSVTLSAKETLFVEAARSMGAKNVRIIWQHIFPQTVPSVIVNVTMKIGGAILAASSL SFLGMGAKPTEPDWGAMLSMGRDYLSIAPHIVYFPGIAIFLAVLAFNLVGDGLRDALDPK TKN >gi|333606354|gb|AFDH01000056.1| GENE 280 313733 - 314659 774 308 aa, chain - ## HITS:1 COG:RSc1381 KEGG:ns NR:ns ## COG: RSc1381 COG0601 # Protein_GI_number: 17546100 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Ralstonia solanacearum # 1 306 1 306 307 351 57.0 1e-96 MGRYALQRLLGVIPLLFVVSVLVFMFIHLIPGDPARLVAGKEATLEEINGIRAQLGLDLP LWQQYFNYMGKLLHGDLGSSLRSGLPVSDMLMSRLTPTLILTFLSLGWALIIGLLIGTIS AVNRNRWPDYVGMLTAISGISIPGFWLGLVLIQIFSVQLGWFPTGGVDSWKSYILPSLTL GAGIMSMLARFSRSSMLETMREDYIRTGRSKGLREFVVVGRHALRNSLIQVVTVAGLQFG FLLGGSVMVETVFSIPGLGRLLVDSISFRDYTVIQALLLLFATQFILINLIVDMLYGVLN PKIRYASS >gi|333606354|gb|AFDH01000056.1| GENE 281 314842 - 316443 1403 533 aa, chain - ## HITS:1 COG:RSc1380 KEGG:ns NR:ns ## COG: RSc1380 COG0747 # Protein_GI_number: 17546099 # Func_class: E Amino acid transport and metabolism # Function: ABC-type dipeptide transport system, periplasmic component # Organism: Ralstonia solanacearum # 51 533 31 516 517 430 45.0 1e-120 MKVQGKMWSTLMLLLIFAVVAAGCGGNTETGKESANTGKSEGTQTVSKNKKDVVIAINAN FITLDPHNTSDTHSITGARTMVEGLMGFDENMKVVPVLADSYKISDDGLVYTFTLKQNIK FHDGTDFNAEAVKVNLDRIRDEKNNLKMRKSFAKVSKVEAPDAKTVVITLSEPYNAFLNK MAMALIVSPKALKEQGENIGKNPVGTGSFKFKEWVQGDRLVVVKNPDYWQKDLPKVESIT FKPVPENGSRIAMLKTGEADFIYPMPTEQVSQVEGDSNIVVDKTDSTIVRYVTLNTMKKP FDDVKVRQAINYAINKEAYIKVVKSGLGVKLDSTMSSKTQYYSQQSGYDYDVKKAKSLLA EAGYPDGFTAEIWGENDSETMKGMQFIQQQLALVGIKLDVKSMEGGTLSQQINSAATPEQ AKIQMWYVSWSPSSGDADGATRGLFSSEMFPPAGANTAYYKNPNVDQWIADANKATDPEK AKSIYADIQKTIWADAPWAFMGVDQVISGKRASLSGVKVLPDGSITVRDVEVK >gi|333606354|gb|AFDH01000056.1| GENE 282 316516 - 317532 892 338 aa, chain - ## HITS:1 COG:BMEI1378 KEGG:ns NR:ns ## COG: BMEI1378 COG4448 # Protein_GI_number: 17987661 # Func_class: E Amino acid transport and metabolism # Function: L-asparaginase II # Organism: Brucella melitensis # 6 324 7 326 340 167 31.0 2e-41 MRFTPLVEEYRGGVLENVHYGAVSIVDEKGRILYSAGDPEHLTFLRSAAKPFQALPVMKR KVDEVCGLTGQEAALFAASHRGERFHIDALESMLLKTGIQEEGLHCCESYPLNEDAKAER HRDREPKRRIFHNCSGKHTGLIALSKHMGWDERTYYEPEHPVQKEIVETLAYIAEVPEAS IPQGIDGCGLPIFALPLHKIAYSFLKLACPDLIEDKETREAAARIARLMNEYPDMIADTR FVCSELLKDPNLSAKGGAKGVYGIGLRNERLGISLKVSDGSEQVWPSIIASILERLGYSN QETINRLYKLVPNSIVNDGGTEVGERRAVFELKPSSRE >gi|333606354|gb|AFDH01000056.1| GENE 283 317586 - 318743 304 385 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762640|ref|ZP_02169704.1| ribosomal protein L33 [Bacillus selenitireducens MLS10] # 84 340 7 277 323 121 26 3e-26 MKKHDQDFMKRQNRLTVFEIIKHQQPISRASIAKQTGMSPTTVSRIVAELAEEGYLLESE QVSAGLGRKSTLLEMVDAAVLSVGVELDRHQVNIGIVDLQGNVVAMSQYPRSVEESPEVT LERVGTEIDQLTKSNEIDCERIIGVGVGLPGIIDNDTGEVMFSVQLGWRNVRLAERLKEF TGYDVAVDNELKAKALAEHLKGAAIGSQRTVLLGFGNGVGSAFIMEGEIYRGRTNSAGEI GHTTIDPNGMLCDCGKAGCLQTYINIKSLLSEANKIRPVRSIEDLFEAKKAGERWALHLI ERALMYMAITINNVVCMYNPDSVILSGELTDKFPEILDEVVDLCYSKYVWEPLRGAFRIL KSELHEQGVVIGSGLISQNCFFSLE >gi|333606354|gb|AFDH01000056.1| GENE 284 319382 - 320743 1226 453 aa, chain + ## HITS:1 COG:BS_bioA KEGG:ns NR:ns ## COG: BS_bioA COG0161 # Protein_GI_number: 16080075 # Func_class: H Coenzyme transport and metabolism # Function: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase # Organism: Bacillus subtilis # 8 447 5 444 448 520 58.0 1e-147 MLTDYEQLAELNKAHLWHPFTQMKDYNAADPVIIERGDGVRLFDTEGKAYYDGFSSVWLN VHGHGVPELNQAIIRQLELVAHSTLLGLSNIPAIKLAAKLSEIAPDGLRKVFFSDSGATG VEIALKMAYQYARNKGMESKRTFITMKEAYHGDTIGAVSVGAIPLYHEVFRPLLFEAHTI PYPDSFRHPGGASGAMTETLETLRLLLEARADEIAGLIVEPVVQGASGIIVMPEGCLREI ARLCRKHGVLLIADEVATGFGRTGAMFACNLEDVAPDLMVVGKGLTGGYLPVAATLATED VYDAFYADYEEQKTFFHGHSYTGNPLGCAVALENLRLMEERRIVEGVAAKAEFVAGKLSS LKASPHVGDIRQQGLLVGIELVRDRKTKEPYAWEERIGVHVCARARELGLLTRPLGNVIV FIPPLASTRDELGAMTDIIAASIRDVTEQGWRP >gi|333606354|gb|AFDH01000056.1| GENE 285 320740 - 321552 486 270 aa, chain + ## HITS:1 COG:BS_bioD KEGG:ns NR:ns ## COG: BS_bioD COG0132 # Protein_GI_number: 16080073 # Func_class: H Coenzyme transport and metabolism # Function: Dethiobiotin synthetase # Organism: Bacillus subtilis # 4 228 1 207 231 143 38.0 3e-34 MSGIRGIFVTGTDTGAGKTVVTAALAAALRSEGWNVGVWKPVQSGEPIGSGLSDAEKLAA GSGVSEPPEEVASFTLRAPLAPLLAAKAEGVRLTMDMLYEAGQPLCSRYDAMLVEGAGGA AVPLTEDALLAEWIAFLRMPVLIVARAGLGTVNHTLLTVSFLRQHGVDILGVVLNEGACA PGAPGVLESADVQNAPDGLDPSVAGNADLIETFGGVKVLGRFPSIGNVQGPHLLAETAHT TLDLAPVRSFLSKCLEPSPEPSGEGSEVRI >gi|333606354|gb|AFDH01000056.1| GENE 286 321558 - 322736 812 392 aa, chain + ## HITS:1 COG:BH3907 KEGG:ns NR:ns ## COG: BH3907 COG0156 # Protein_GI_number: 15616469 # Func_class: H Coenzyme transport and metabolism # Function: 7-keto-8-aminopelargonate synthetase and related enzymes # Organism: Bacillus halodurans # 4 379 9 380 395 310 47.0 5e-84 MIWIDNELQTLADESLERTLTDTGVSRSFPGHLMRGGQILLDLTSNDYLGLSRHPDIAEA MRGALLEECGSGAAASRLLTGNRPPYSELEAELAVWQKKEASLVFANGYMANLGTIRALV GRGDAVFSDRLNHASITDGIILSRAGHIRYRHNDMEHLEHLLKKSDKARRRLIVTDSIFS MDGDSAPLHKLVELKHNYDAMLMVDEAHAEGVYGSNGEGLCHAMDVHREADVIMGTFSKA FGVYGAHISGSRTLIRWLVNKARPLVYSTALPPPVAAGIYRALGIVQTAHDRRNHLRAVS GRFRQRLAQAGLNVMPGDSPIVPVIAGSSRDSLRWCEALERHGIAAPAIRPPTVPAGSAR VRFSLSAAHSDAVLSKAAESIVSAAAEAGILA >gi|333606354|gb|AFDH01000056.1| GENE 287 322733 - 323665 348 310 aa, chain + ## HITS:1 COG:BS_yisY KEGG:ns NR:ns ## COG: BS_yisY COG0596 # Protein_GI_number: 16078154 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Bacillus subtilis # 57 299 24 267 268 83 29.0 4e-16 MKRALSQTPGRGVHPVKEHGGAEQRAKHSTPINTEFGLQPSAYYERPRAFSKKSGSILWL SGWSMPPAVFDDVRRELPEFRHFCADYGSAESPGAIADSVRRLALSLRACESHGEPHESA LPAPLLIAGWSLGGLLALRLASEGLADGLVLFGATACFVRRPAEQHSGWAPASVQAMIPA LRQDADRVLQQFRRLMFTKEERRDGLDARLPEASGWSVPGLIAGLELLVAEDVRDVLPDI HCPTLLIHGTHDKVCPYGAALEIQTGVPQTVLVEAAGRGHVPFLQKERQTAETIRSWWND SSERQNPASV >gi|333606354|gb|AFDH01000056.1| GENE 288 323628 - 324563 428 311 aa, chain + ## HITS:1 COG:BH3909 KEGG:ns NR:ns ## COG: BH3909 COG0500 # Protein_GI_number: 15616471 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Bacillus halodurans # 8 308 8 267 271 144 33.0 3e-34 MTHLSGRIRRQFDRSAAGLYDQNAAVQRFMTAQLARLIRDELPPPHSRLARIPAGHPPVL EIGCGTGLLTERLAALLPPGGEMTAADLSPAMLDAARNRLGARSGRNDRDSDAPRESSAP APISPGFPDNQPDSVRFLQADIEKWAADAPSSSYGLIASSACFQWFTRPAQTLFHLRRLL KPGGKLMFATFGPATFTELHHSFDKAYRSMEIPPQRHGLSFHGGDEWTDMLRQAGFGEIR TTRLVRTEYFPDVALFLKSVKSLGASTTNALQLPGLSPRRLFSGMFEHYEKDYGTQGRIP VTYELLFIRAT >gi|333606354|gb|AFDH01000056.1| GENE 289 324935 - 326287 1190 450 aa, chain + ## HITS:1 COG:lin2611_1 KEGG:ns NR:ns ## COG: lin2611_1 COG3397 # Protein_GI_number: 16801673 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 28 306 18 293 294 207 45.0 2e-53 MTPISLRNPVLAKCLIASGLALALAFCLLLITEKASAHGYIESPGSRGYLCAAGKNKNCG AIIYEPQSLEAYKGFPAAGPADGKIASASGLFPELDQQSATRWTKVNMSSGTNTFKWTIE ANHATTSWKYYITKQNWDPNAPLSRASFDLQPFCSVNFKGKQPGFTYTDTCNVPSRTGYQ VILAVWEIADTENAFYNVIDANFGGSGPADTTAPTAPSNASASNITATGATISWSAATDN VGVTAYKIYNGSTLVGTTANGTTLSYNTAGLTANTSYTFTVRATDAAGNDSAASNAVTFK TTAAAADTTAPTAPSGLQVVGSPTSSSVSLKWGASTDNVGVTGYRVYQGAALVKSVSGTT LDTVVSGLSASTAYTYTVRAFDAAGNESADSNAVSATTSAPSAAAPWAPNTAYTAGTLVT YNGSTYECRQSHTSLVGWEPANVPTLWLKK >gi|333606354|gb|AFDH01000056.1| GENE 290 326533 - 328158 1530 541 aa, chain - ## HITS:1 COG:SA1155 KEGG:ns NR:ns ## COG: SA1155 COG1502 # Protein_GI_number: 15926899 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes # Organism: Staphylococcus aureus N315 # 110 525 139 488 505 95 24.0 2e-19 MEKPNKETEQTSCEDATAVREGIKNFINYLLSRGPVDKVIDGAQQAVDFASANIPFEAAA RYRQEIGGIFTSYEQLLSIPGVGQEVIEELGSYVKRLDLAKLNALLPQTTSGNRVDAYVN GPDCLRVLLDEIGGAERYIHFSVMLFFNDQSGKKIAGALLDALKRGVKVRLMADFGITAL GYNMNLAVGDMEEVIETLKEAGGQVINTFKTCYGNEEWPAKRAELASRGVPESSLFLQDY VQEQMTMGVNVVNHRKFMIVDGISSIVGSVNVGDQYLFDTPVLTDPEQIYAEGDRGPGLG VPAREEEWHDGCFRIRGAAAITLNRIFSFQWTVLGGDVFDPEDSFYKPERDMRFGDEECT LYASFPGNPVNVIQQYYLSLLTYAGDETVIVNPYLIDQAFWDELKSLDEQRSGCIALCNP LRVNDHPTNGSAVRSNMYEPFLKGVAFYDYSHTERFSHWKITYDKRSDCVFHGSYNINER SACHDFELGVLVKGRSFADQVKKMIDYDLSVSEKISGPETFFKYPALHPSTYWNKLTQNF T >gi|333606354|gb|AFDH01000056.1| GENE 291 328287 - 328436 231 49 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|192813127|ref|ZP_03041792.1| ribosomal protein L33 [Geobacillus sp. Y412MC10] # 1 49 1 49 49 93 85 1e-17 MRVTVTLACTETGDRNYTTTKNKKTQPNRLELRKYCPRLKRHTLHRETR >gi|333606354|gb|AFDH01000056.1| GENE 292 328474 - 329682 1183 402 aa, chain - ## HITS:1 COG:BS_yciC KEGG:ns NR:ns ## COG: BS_yciC COG0523 # Protein_GI_number: 16077405 # Func_class: R General function prediction only # Function: Putative GTPases (G3E family) # Organism: Bacillus subtilis # 4 388 3 389 397 529 65.0 1e-150 MDNKIPVTVLSGYLGAGKTTLLNHVLNNRDGLKVAVIVNDLSEVNMDADLIRDGGGISRT NESLVEMSNGCICCTLRDDLLKEVERLAKENRFDYILIESTGVGEPLPVAQTFTYIDEEQ DIDLTRYCRLDTMVTVVDAFRFWHDYASGETLLDRNQAVSDDDNRDVVDLLIDQIEFCDV LVLNKCDRIDPDELLELERVLRSLQPRAKFIRSVMGEVAPAEILNTNLFNFEEASASAGW IREMEKEEHTPETDEYGISSFVYERTLPFEPRRLKSWMEDWPAEIVRAKGIMWLATRNKF AQNLSQAGPSIRFGPAGYWVAALPETEKQAILAEEGDSIPRWDPVYGDRINKVVFIGLDL DQGEIVRSLDACLLTEEEMRSDWSRFADELPNLVGELNEASF >gi|333606354|gb|AFDH01000056.1| GENE 293 330073 - 331089 975 338 aa, chain - ## HITS:1 COG:BH3340 KEGG:ns NR:ns ## COG: BH3340 COG1226 # Protein_GI_number: 15615902 # Func_class: P Inorganic ion transport and metabolism # Function: Kef-type K+ transport systems, predicted NAD-binding component # Organism: Bacillus halodurans # 37 240 38 241 338 122 32.0 1e-27 MHLFLRYAHRILRLSNGLLAVMALLFVLLASVLAYWLEPDTFETWFNSLYWVMTTMATVG YGDYFMKTALGKLFTIFLYLFGIGLLSLVIGKIIDAFATLKIRRETGKVNYHGRGHIVVI TWNKKAYSAVEELIASDPELEIVIIDENEKIPYDHKKVHFVSGDPTLDKTLIRAGLDKAR SAIIFADETSSGSSLVDGKTLLIAASIERLAPDVYTTAEIMSEKHIQNFRHVKVNDFILS HDAVSMLAVRSALNEGSVELYMQLISRQYGGEIYEVSVNPAWANYYDAFQDLLKKGATLL ADRQDLSINTRLNDPIPADAKLFVVCSPETYKHLRDHT >gi|333606354|gb|AFDH01000056.1| GENE 294 331175 - 331465 59 96 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MEFRATVERASRVSVRWRRMGVETGANLVYTKQNHYIGITPVKRFQLGGVIAKEKHSASP KLTGSARYRGTKVDWTPQTSGQFGWHRENIKALLVP >gi|333606354|gb|AFDH01000056.1| GENE 295 331512 - 332798 1247 428 aa, chain + ## HITS:1 COG:DR1276 KEGG:ns NR:ns ## COG: DR1276 COG0172 # Protein_GI_number: 15806294 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Seryl-tRNA synthetase # Organism: Deinococcus radiodurans # 1 419 1 416 425 316 42.0 5e-86 MLDVKWIRAHQAEVEYAARHKGIEVSIPELLELDEVRRSRLAEIEALRQSRNALTEEIGM LLKQGDQPEAARKKQAVKDIHLRLNDLEAAYRLTDQAYTAAMQRVPNPVSPDTPAGQSDK DNIELYRAGTLPDFTFEPKDHVALGNLHRMIDIPRGVKTAGPRHYYLTGAGVLLHRAVQQ LALDLLTEKGFMPVDVPLMAREEALLNTGYFPLGEDQTFKLADEDKWLVGTSEVPLVSYY SNEIVDLAEPIKMAAVSLCFRSEVGSAGRDVHGLYRVHQFAKVEQVIICENSLEKSDELL REITKNAEELMRLLELPYRVVAVCCGDMGQKTYKQVDIETWMPSRNAYGETHSSSNLLDF QARRSNIRYRNAEGRLTYAYTLNNTAVASPRILIPLLENHQQEDGSIRIPEALRKYMNGI GEIRAVHE >gi|333606354|gb|AFDH01000056.1| GENE 296 332970 - 334565 1624 531 aa, chain - ## HITS:1 COG:BH3842 KEGG:ns NR:ns ## COG: BH3842 COG4753 # Protein_GI_number: 15616404 # Func_class: T Signal transduction mechanisms # Function: Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain # Organism: Bacillus halodurans # 1 524 1 514 530 105 23.0 3e-22 MRKLLIVDDEKNIRLGVSSMIRREFAGTYEIELASDGEEALRIVRDAGAHIVITDIRMPG MDGIALLRELQTFPVKPLVFILSGHDDFAYAKEAIRNGVKGYLLKPIVREELYEALRQAE KELDRQEARQEAQPGKFSAGSGELESFHSSQLNYILMHPEMDASEIRQRLATVGFADNGN GNGSGWRLGLLRFPPDLRPRELDEGLARLERLVPRDLQPLLNSASTFVFMDKDRSLVLLA PADGVLRLLRAAVPAGSSPLLRAGVSREKRDAALFKEAYREALSALRSTFIASAGGCVQL VEELEEKRDRGEIPREHIRQISNKLGTGRLGEIKALLAHVLDARTAREEGVAYVEAVSSL LNKDVFDQVFHTYGEQSVEILRIYKKAGTIDNFEHYHEYADCAGRLVELLDEYVGRMKQV HVDHIEIKRAVKYMEENYARDLNMAMVSNYVSLNYTYFSKIFKEYTGDNFVGYLKKIRIS RAKELLESSHSKVYEIAEQVGFENTKLFTRVFKEKEGITPQEYRAKRYMEG >gi|333606354|gb|AFDH01000056.1| GENE 297 334572 - 336458 1863 628 aa, chain - ## HITS:1 COG:BS_yesM KEGG:ns NR:ns ## COG: BS_yesM COG2972 # Protein_GI_number: 16077762 # Func_class: T Signal transduction mechanisms # Function: Predicted signal transduction protein with a C-terminal ATPase domain # Organism: Bacillus subtilis # 3 620 1 571 577 164 24.0 5e-40 MDMTSRLSGWKARTIQAAGAVPLQTRLIVSYIFIMLIPVVLLSMYLFNSFYQSTIREIVK SNESMLEVEKTNIYNHMETMERTAQLIVSDTAVAEYLQSNRNLEVNELLEYRRNAYDNLL RLQFNNPNLAHIRLFTNNANVKEIWPVFFSESRVTGQPWYKQVKESSGTVQWIFGHSDPD LIRDTSVPSMDERGKVSLLREVSFVKGRHEAIVQVDMFFDLFFPKTFSRVQDGQSQMMIV DGSGTVHTLYDTAFFRKLAPSEFLDRLNRDASLGGSFEFTSKGTRYLCVYAKLDRLGAFM LNIVSLEEPFSDIAKTRNNLILAVIGLIALLAVTTYFLLSLILKKLHVLQNSMKRVRQGN FHFDIDIHGGGEVGELAHHFRLMLRKINELIVEAVNKQAATKEAELNSLKNQIDSHFMYN TLENLKMMAEIGEQYALSDALTSLGGMMRYNLKWTSDYVRLADEIQHIGNYIAIMNIRYD DKLRLQLEITPGFWDRKLPKMSLQPIVENAVKHGIRSAGGEDVLVITVKARELDGRMFIS VHDDGRGMTLRKLEELRLTMSMEDEAFRHRHSAGELREREGSGIGLRNVNQRVRLYYGKE YGLQITSREGAWTEVVLSLPLLSLTGGG >gi|333606354|gb|AFDH01000056.1| GENE 298 336596 - 338269 2133 557 aa, chain - ## HITS:1 COG:BH1913 KEGG:ns NR:ns ## COG: BH1913 COG1653 # Protein_GI_number: 15614476 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Bacillus halodurans # 52 546 32 545 551 114 25.0 4e-25 MRKTSRLVPLVLSAVLALTSAACTQRGAGGETAKPESTAAEIKIDPDAPGWKSDTSPVTF DWYLNFSWFGSKWGADPTSQYITKKTGVNLNLIVPAGNENEKLNTMIASGKLPDFITLGW YEDGVKKMIEGGMVLPLNKLADQYDPYFVKVADPAKVSWYTQPDGNVYGYPNAAASPKDY ETSGDKQTSNQTFLVRKDMYEALGKPDMRTPEGFLGALKAAKEKFPEVGGQPLIPLGLHE FGDTGNYSLEDYNQRSSILQNFLAIPMEKDGKLYDRTTDPEYVKWLKTFRKANETGLLAK DIFIDKRPQMEEKIAQGRYFAMMYQRTDFAAQQNVLYAKDPNSVYIAVDGPGNAKQDPPA LSGGTISGWTVTLISKDVKDKARAIRFLTYMLSEEGQKDFYLGEKGVSYDTIDGKDQFKP EALALLNKDRAAFDKRYGSSYTFWMLMDTTMNLKWAPPAVEPFKQLEDWTKGKTKSFSQF DQVNPTGTSEEGIIAGKVTQLWGKALPKLLLAKSDGEFDQIFAKFLKDRENAGIAKVEAY RQKVYEDNLKKLQQFLK >gi|333606354|gb|AFDH01000056.1| GENE 299 338310 - 339197 926 295 aa, chain - ## HITS:1 COG:BH1912 KEGG:ns NR:ns ## COG: BH1912 COG0395 # Protein_GI_number: 15614475 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Bacillus halodurans # 10 294 6 296 297 236 43.0 4e-62 MILFKRKTAGEAIFDGLNGLVMLLVCFVTLYPIWYVLVHSFNNGTDAMQGGIYWWPRVPS LDNYRAVFENTGIMKAMGITVAKTVIGTAAHVFFTSMVAYAFSRRELAGRRVYMMLGTVT LFFSGGLIPTYLLIRDLGLLDSFWVYILPAMFNFFDLIIFLAFFREIPAGLEEAAKIDGA GDFTIFCRVVLPVSMPVVATIALFHGVYQWNDYFTGMIYINNPDLQPIQTFLYRVVAQSS SNQMLAAAPGGMAKNVTSQSIKLATMVVTTLPIVLAYPFLQKYFVKGFMIGSIKG >gi|333606354|gb|AFDH01000056.1| GENE 300 339215 - 340177 793 320 aa, chain - ## HITS:1 COG:BH1911 KEGG:ns NR:ns ## COG: BH1911 COG4209 # Protein_GI_number: 15614474 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type polysaccharide transport system, permease component # Organism: Bacillus halodurans # 28 319 26 318 319 262 45.0 5e-70 MPSSNRSRTPAAFQSKRGAAGWIRLFYKQRQLQTMALLGVAWILIFNYIPMYGILIAFKN FSIIKPVSEAPWVGFEHFRAFLEDENLLPVIRNTLGMSLLKLVIGFPLPILFALFLNELR SVRFKKTVQTISYLPHFLSWVILGGILSTWLADTGLINKLLEGLGILREPIAYLAEPAYF WGIVVSTDIWKELGWSAIIYLAAMAGVSPELYEAATMDGAGRFQKMRAITLPSIKGTITI LFILAISGVLNSNFDQILVLRNSLNESASNVIDVYVYQMGIANSRFSYATAVGLIKSVIA LGLLLGANYVTKRFNQTSLF >gi|333606354|gb|AFDH01000056.1| GENE 301 340775 - 341941 1115 388 aa, chain - ## HITS:1 COG:SA2461 KEGG:ns NR:ns ## COG: SA2461 COG0726 # Protein_GI_number: 15928254 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted xylanase/chitin deacetylase # Organism: Staphylococcus aureus N315 # 37 257 62 269 290 97 25.0 3e-20 MMKALKIFLSLLLVAGSIYLVRQSAPRFTYKDQVAVLLYHHISDTDMSNVTITPALFRSQ LTFLKKENYHFITLQQFRSFMAGGNVPENAVLVTFDDGYESLYDQAYPVLKELQVPAVNF EITGTLADPRARKLHFLDERQLRTIATDRDANISCQCHSDSMHDKQNGKPLLTTNIVVDG KQETEEQYKKRVVNDALDCKKKLKKAGEEEVDSYAYPYGYYDDRATSLLQSVGYKYGFTV LSEMTTRADDPMQISRITAGSPDITPQVLNRTIQRNVMDFSQDYNYVPLRDTLKDLGGTM ARNKDRTITFYLHGKPYMLDPESGTIETAGKQIPLKHPLLLKSRKVYIHFKDLENVLGIQ IAHNPLRNSFFERLTPAKARNIETLTKS >gi|333606354|gb|AFDH01000056.1| GENE 302 342206 - 342337 86 43 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MGYVGGVGTGVGCGVGYGGLFTSTAVILVLFILLVIVSRTFLY >gi|333606354|gb|AFDH01000056.1| GENE 303 342553 - 344502 1825 649 aa, chain + ## HITS:1 COG:BS_sqhC KEGG:ns NR:ns ## COG: BS_sqhC COG1657 # Protein_GI_number: 16078992 # Func_class: I Lipid transport and metabolism # Function: Squalene cyclase # Organism: Bacillus subtilis # 18 528 19 511 556 417 43.0 1e-116 MRIMREVAHAIHNLSEWLLGKQEKDGTWKFCYDNGISTSAYLIILLRTLETENADDEALI RRLHDSIVRNQQPDGSWKLYADEKDGNLAASVEAYYALLFSGYSDDSSPSLVNARAFIRS RGGITGVTNVLTRVILAATGQIPWPAAYSIPLEFLLLPASAPLSFFDLSAYARVHLAPVL LMADRNFSVRTSRTPDLSALGVRRDEDGKSGASSGSVPGSSAQPERGPGGLLAAIQAGIS QLAALPGQLHGSAVKKAERFMLERIEPDGTLYSYASSTCLLVFALLSLGFERRHPTIAQA VKGLKAMLCVSEGRLLMQNAPPTVWDTALIAYALQEAGVRPEAPGIRKAASYLLAKQQRK IGDWGRKVSHPVPGGWGFSPSNTRNPDVDDTTAALRAVKFLRSEGTAGREAWNRGLYWII SMQNQDGGWAAFEKDTDEKLLTLLPMEGAKHAAIDPSTADLTGRTLEFLGSTAGLGVKHV WIRRGADWLVANQEKDGSWYGRWGICYLYGTWAALTGLAAVGLEPDHPAVAKGVRWLLSV QNPDGGWGESCASDIVGRYESLGASTPSQTAWALDALIAVHPRPSAAIDRGIQRLVAALD ERDWTSLYPTGAGLPGSFYNTYESYRYIWPLLALSHYRNKYGEKSVKPE >gi|333606354|gb|AFDH01000056.1| GENE 304 344539 - 344793 306 84 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MDAKEMEEQLVRKLTEGEMKEEDREESARKRLMAKTEIRIQATTDPVVEETRKYREMAEE LDGRYDRYTHLLEVKGPDSSKDQS >gi|333606354|gb|AFDH01000056.1| GENE 305 344950 - 346980 2270 676 aa, chain - ## HITS:1 COG:CAC3683 KEGG:ns NR:ns ## COG: CAC3683 COG0768 # Protein_GI_number: 15896915 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Clostridium acetobutylicum # 22 672 20 670 671 554 45.0 1e-157 MIRNGKTLAGIGGILLLLLLSACSQEETPQHAFEAYVSGWKALNYEAMYDKLSPASQTKI SKDDFVKKYESVYKGIEMTDLTVKPAFPEELQKPVKNKDEVSVPFHVELNTLAGPVKFDQ TARLVKGQKEKDTVWQVDWSPSYLFPQLKDGDKVRVQSTEAGRGEIVDRRGNKLAYNGPA KQIGVVPGKLGDAAEQTKAKLAGKLGMKVEEINQKLSASWVKPESFVPLAYIQDGETEAY TKLPGVTFSSKEIRTYPFDEAAAHLTGYIGQISAEELKKLQSEGYRTGDVIGKAGLEQIY EKQLKGQPGYKIFITGADGTEKDTLAEKKMVPGQTVTLSIDANLQKLVYEQMKKDAGSAA AIQPLTGEILALVSSPSYNPNTFVKGISGTQYKQLSEDPKKPFLNRFTKTFSPGSAFKML TAAVTIDGGVLNPDEQKPIKGLRWTKDASWGSYYVTRVHDASPVNLQSALTNSDNIYFAQ AALELGKDKFAEASAKFGINEKLPLPYAFDTSQLYNKQIANDIQLADSGYGQGEVTMTSL HIALTYSALVNQGNIIYPSLLKEDKGKEKYWKPSAMKPETAELLKKDLVEAVKDPRGVGH GAAVPGKLIAGKTGTAELKKSKGEEGQENGWFVGFDAADPQLLVSMMIEDVKGRGGSGYI TSRVKAVFQQYANGIN >gi|333606354|gb|AFDH01000056.1| GENE 306 347375 - 350455 3036 1026 aa, chain - ## HITS:1 COG:CAC3038 KEGG:ns NR:ns ## COG: CAC3038 COG0060 # Protein_GI_number: 15896289 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Isoleucyl-tRNA synthetase # Organism: Clostridium acetobutylicum # 3 1010 4 1017 1035 959 46.0 0 MNKVDVKEKARTRELRVLNQWREGDTFRRSIENREGKPNFVFYEGPPTANGKPHIGHMLG RVIKDFIGRYKTMSGYRVVRKAGWDTHGLPVELGVEKQLGISGKQEIEEYGVAKFVETCK NSVFEYEKQWRELTEAIAYWTDMEHPYVTLTNDYIESVWHVLSTIHKKGLLYKGHRVSPY CPDCQTTLSSHEVAQGYEDVKDLSATVKFKSKAADEYFLAWTTTPWTLPANVALAVNKDL DYVKVKHNGDVYVTAQNLAEKVFGEEAEVLSVHKGAEFVGTAYEPPFGYLNLNKGHLVVD ADYVSDSSGTGIVHIAPAHGEDDYRTTRQHGIDFVHVVKQDGTYAAEITDFAGRFVKDCD VDIVKKLSERGLLFSKERYEHSYPFCWRCKSPLLYYAMESWFIRTTAVKDQLIANNNEVS WYPGHLREGRFGKFLEELVDWNISRNRYWGTPLNVWVCGDCGEEFAPGSHQELRDRAVDP VDESLELHKPYVDDVKLRCSCGGVMERTPEVIDVWFDSGSMPFAQYHHPFGDEKTFNEQY PADMICEGIDQTRGWFFSLLAVSTLYNGRAPYKAVISTGHVLDENGLKMSKSKGNVLDPW NIIEEFGTDAFRWALLSDSAPWNSKRFSKQIVAEAKSKIIDTIHNTHAFFALYADIDGFD PGSFERKPPRNELDRWILSRLNSTLASVVKGLDANDFLNPAKQIEVFVDELSNWYIRRSR DRFWGSGMPEDKVEAYQTLHEVLLTLARMIAPYAPLIAEDVYGNLGGKGSVHLADYPKAD EAAVDTALESEMETARQIVELARSIRNETAIKTRQPLSELLISLDREFALDRFEAIIQEE INVKQVRLEQSDAGFVQFALKLNLKAAGKKYGKLVGPLQAYLKDLSPEAAAAAVGRGALD TEMQGESVHLTLDELLVEKTAKQGFASASGYGLTVALNTEVTEALKQEGAVREVVRAVQD YRKKLDLPIDRRITLVLDADPQLKEALLRYEQVLRDNVLVSKIRYENAEGMEEVALGEST LRMRVE >gi|333606354|gb|AFDH01000056.1| GENE 307 350972 - 351724 726 250 aa, chain + ## HITS:1 COG:SA2490 KEGG:ns NR:ns ## COG: SA2490 COG2162 # Protein_GI_number: 15928284 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Arylamine N-acetyltransferase # Organism: Staphylococcus aureus N315 # 3 250 8 258 266 152 33.0 8e-37 MNVEAYLKRMETSRPAKPDLAALKELQLRHMLHVPFENLDVIRQTPITLDIASFYEKVVG RRRGGFCYELNGLFSTLLKELGFTVRLIAATVAKPDGTWGMPESHATILAELDRSYLVDV GFGDSARSPVPLDGTPVEDASGVYRAAKVPEADGLYDLQRAGEDGTWSALYRFSTAPRSL GSFAEACTFNQTSPESHFTQKLLATKATATGRVTISGDQLIETDGDVKSRQPLAPEELEK TLISRLGLSV >gi|333606354|gb|AFDH01000056.1| GENE 308 352049 - 352594 692 181 aa, chain - ## HITS:1 COG:BS_ywqN KEGG:ns NR:ns ## COG: BS_ywqN COG0655 # Protein_GI_number: 16080668 # Func_class: R General function prediction only # Function: Multimeric flavodoxin WrbA # Organism: Bacillus subtilis # 1 181 1 181 181 218 55.0 4e-57 MSIAVIYGGTRPDGNTEQLTEEAVKGLTVDRIQLNTYTIRAIIDGRHAEEGFPEMNDDYK EVIDRVLAADVLIFATPVYWYSMSGIMKNFVDRWSQMMRDGDYPDFKKTMAAKKAYVIAV GGDLPEIKGLPMIQQFQYIFDFMGIRFEGYILGKGNKPGDVLHDAEGMFAAEQLRNKLAA L >gi|333606354|gb|AFDH01000056.1| GENE 309 352809 - 353759 253 316 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149913192|ref|ZP_01901726.1| 50S ribosomal protein L35 [Roseobacter sp. AzwK-3b] # 1 294 1 293 305 102 26 3e-20 METKQLLTFKTAAENLNFTQTARMLNFAQSSVTAQIKALESELGAPLFERLGKRLVLTEA GRQFKLYADKIITLTEEAKQAVRGDEEQAGTLVIGAQESQCTYRLPALLKEFKARFPNVK LVFRPSNSDAHAREQLLEGVLDIAFIMDSCKPREALHIETLIREELKIVAPPDHPLADVK NLTPKDLEHETFLLTEAGCSYRTILERSFSSVSVYPLNKFEFASIEAIKQCVMSGLGIAI LPGMVVAADLREGKLTELAWKAPEDALFTQIAWHKDKWMTPPLLAFIELTRKVFHAGETA PEHKPEAKPAEETLTS >gi|333606354|gb|AFDH01000056.1| GENE 310 353749 - 354891 1235 380 aa, chain - ## HITS:1 COG:CAC2834 KEGG:ns NR:ns ## COG: CAC2834 COG1929 # Protein_GI_number: 15896089 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerate kinase # Organism: Clostridium acetobutylicum # 3 375 6 375 380 312 46.0 6e-85 MKIVIAPDSYKGSLSSKEAGLAMERGIRRAGIGNFTTSVIPMADGGEGTLECLMESSKGR MVRAVVKDPLGRDISAVFGILGDGRTGVIEMAKSSGLYLLGESERNPLLTSTYGFGQLIA AALDEGCRHFILGLGGSATNDGGAGMLQALGAELLDSGGRPLADGAGGGALGEVAGISAD GLDKRLARCTFTLACDVTNPFTGPHGASAVFGPQKGAAPDMVDRLESNLARFADVIREAT GTALHGLPAAGAAGGLAGGILAFLNARLESGFSVVSAVTGLEAAVKGADMVLTGEGRTDA QTARGKTPAGVAGLAAKHGVPAVVLAGSVGEGIEELYGQGVTAVFSLVNGPMSLEEAMRR TPELLEQTAAQVMRIFAVRK >gi|333606354|gb|AFDH01000056.1| GENE 311 355259 - 357553 2546 764 aa, chain - ## HITS:1 COG:VC2416 KEGG:ns NR:ns ## COG: VC2416 COG0737 # Protein_GI_number: 15642413 # Func_class: F Nucleotide transport and metabolism # Function: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases # Organism: Vibrio cholerae # 19 616 4 595 634 639 53.0 0 MKAKKAVSLTVSAMLLFGTVFTSGRAAAETAEPAKPAKADTEISILGTSDIHGRFMPWDY ALDGPNTNGSLTQLFTMIKKVRQENPNTVLVDAGDMIQDNSAELFNDQPKSPMMVAMNEM NYDAWVMGNHEFNFGLDVFKKITSQYKGQMLGGNIYKDNGDRFLPAYTIIEKAGVKIGII GMDTPMTAEFEKGTDHLDGIQFKNPVEETKKAVKELEGKVDVMIGLMHMGIENENGVPGT GVADVANANPELAAIFAGHMHKLVKSETVNGVLIAEPDKYGTHVSRIDLTFTEKDGKMVL KDKKAAALPVKDASGVTAVSDPELEKTLKPFHDFARADANIEVAQLKGMNLVPKNEIEGI PSVQIQETPLSDFFSEVMLHYSKADVVAHQIDNDKARLDIGPIKKKDIAYNYQFALGEVT VYQVTGKDVKDYMEWAVGYFNSTRPGDVTVSFDKKRRASKYSTNDFFGGVKYDIDLTKPY GSRITNLRKMDGTAIRPEDSLKLGMNAYRMDALKAKGGALEGRKFEQLWSSKDASAFGEM GGTIRSRAIAYLKEVKNGVYEPKVQNNWKIIGVDTTSPERADVVELINSGILSVPKTEDG KYTNVESINILDAVTKEEITALAGKAKVDGSLFDGVQTKGEFYRKLNAAVKAAGNGSGEP TAPQPEPKPEPKPEPKPEPKPEPKPEPKPEPKPEPKPEPAVKKQAQVTSYFLNVRTKASA TAKIITAVPKGTILEVLGTSYGWVKVSYKGSIAYVYGEYVKMLP >gi|333606354|gb|AFDH01000056.1| GENE 312 357864 - 358268 590 134 aa, chain - ## HITS:1 COG:BH3304 KEGG:ns NR:ns ## COG: BH3304 COG2259 # Protein_GI_number: 15615866 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Bacillus halodurans # 4 130 2 128 129 95 44.0 3e-20 MNSINKWQYGAFILRIVLGLIFLVHGYQKFEGGLSGVAGFFGSLGLPGFMAYVVAVIELA GGILMLIGLGTRWIAAAFAVIMLVAIFTAKLSQGFTGGYELELALLGMSLGLFFTGKQFL ALENVFSRGKANAL >gi|333606354|gb|AFDH01000056.1| GENE 313 358362 - 359210 665 282 aa, chain - ## HITS:1 COG:no KEGG:BMQ_3167 NR:ns ## KEGG: BMQ_3167 # Name: not_defined # Def: peptidase, M56 domain-containing protein (EC:3.4.24.-) # Organism: B.megaterium_QM_B1551 # Pathway: not_defined # 5 281 8 280 283 212 41.0 2e-53 MWQSRSRFIFRSSVLIAGVVLFQMTMYALHVLFGLRIGFNVLDVCTEWMRSKGIFSIAHL LDAFVIGTFAYSLWQILRQFVLSRRIFAKLAACRHTKLSAELNRMYPEARGNIVVVVSDE PIALTMGFGRPAVVLSTGLLNMLEASEAEAVIHHELHHQQTGDPRSMFFLSLLASVLWYL PVLKWFHHQYKIAREILADNYAISRQGSSRDLGSALLKLLRRGGTVAMPFAYASFADTSI NYRIRRIVDPESPISFRPPLTPTMISVYVLVMLTWLFVQILF >gi|333606354|gb|AFDH01000056.1| GENE 314 359212 - 359628 434 138 aa, chain - ## HITS:1 COG:alr2569 KEGG:ns NR:ns ## COG: alr2569 COG3682 # Protein_GI_number: 17230061 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Nostoc sp. PCC 7120 # 18 131 15 129 139 60 31.0 1e-09 MKIHNFKTNESGLNRFFGPLEAKIMNILWDGPEMAIKDVQHALEREKLVNFNTVMTVMNR LLDKGILSKRMDGRTSLYRPVQSRDEFLECQSKELTHELMEEFGSSLVVNHMLDALEEVD PMLIEKLQQKILDLQKDK >gi|333606354|gb|AFDH01000056.1| GENE 315 359778 - 360158 421 126 aa, chain + ## HITS:1 COG:BH0737 KEGG:ns NR:ns ## COG: BH0737 COG1733 # Protein_GI_number: 15613300 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus halodurans # 6 109 12 114 118 115 54.0 1e-26 MEIIPEQCKVVVALDMIVGKWKPLVIQHLISKDTLRFNELRRLMPDITQRMLTLHLRELE EQDIVRRVVYPQVPPKVEYSITEYGRTLEPILHSMHVWGAAHVEHMKHRNAESAAEAESR AASARP >gi|333606354|gb|AFDH01000056.1| GENE 316 360345 - 360980 803 211 aa, chain - ## HITS:1 COG:BS_yvaB KEGG:ns NR:ns ## COG: BS_yvaB COG1182 # Protein_GI_number: 16080407 # Func_class: I Lipid transport and metabolism # Function: Acyl carrier protein phosphodiesterase # Organism: Bacillus subtilis # 1 211 1 211 211 298 69.0 4e-81 MATVLYITAHPHDHQTSYSMAVGKEFIEAYREANPADEVIALDLYNSDIPQIDADVFSGW GKLRSGSSFDQLSASEQAKVQRLNDIVEQYIAADKYVYVSPMWNFSFPPVLKAYIDAICI AGKTFKYTENGPVGLLTDKKAIHIQASGGVYSEGPAASFESGHSFLNKIMQFHGVPSFEG IFVEGMAAMPDKAPAIKEAAIAKAKEAAKRF >gi|333606354|gb|AFDH01000056.1| GENE 317 361168 - 361770 599 200 aa, chain - ## HITS:1 COG:CAC3314 KEGG:ns NR:ns ## COG: CAC3314 COG3560 # Protein_GI_number: 15896557 # Func_class: R General function prediction only # Function: Predicted oxidoreductase related to nitroreductase # Organism: Clostridium acetobutylicum # 3 197 2 196 198 250 60.0 1e-66 MSAESFLQAVRERRSIYSISGESPVSDDKIVEIVKEAVKHTPSSFNSQSARVLVLLGEQH HKLWDIVKDILRTIVKEDQFAATEQKVNSFRSGHGSVVFFEDMSVIEGLQGQFPSYQDHF PNWSQQSSGMLQYVIWTALESEGLGATLQHYNPLIDEKVKSTWNLPESWKLIAQMPFGKP TAPAGDKEYKPVEERVKIAK >gi|333606354|gb|AFDH01000056.1| GENE 318 361955 - 362578 428 207 aa, chain - ## HITS:1 COG:no KEGG:BBR47_14730 NR:ns ## KEGG: BBR47_14730 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 6 207 5 206 211 237 57.0 2e-61 MRFEEEFERQIRNLIDKGYPGFMGLEEAAFRELFAPLKERAAERMREDFKPGEGSLPFVL VVTTGTLPRDEMMRRVERSGKNGFSVMEAEDLARFEPIEGVELPEGEAYLLLDVDTGSET LNRTPNEAMKSFAEWNRSPLTIEEGIAVITQFPDILQKNHGFSLCGSRCGDRRVSALWIS GGKPKLGWCWAGNPHTWLGSASCGARI >gi|333606354|gb|AFDH01000056.1| GENE 319 362763 - 363491 651 242 aa, chain + ## HITS:1 COG:BH3675 KEGG:ns NR:ns ## COG: BH3675 COG0789 # Protein_GI_number: 15616237 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus halodurans # 122 229 2 107 131 81 37.0 2e-15 MNFRPIDIARKLHVSTSALRNYEAAGLVPPADRTASGHRTYTELHAAYFECIQAMSPGFG MDITAEVLRRLQKGEWASALWRMTEAQAALFQDKRRADDTLAYLESGEAETAQEAPDPGG QSIGRVSMETGVPRSAIRHWEKAGLITASRNPANGYRTFSRLQVRKIRLIRTLRQAIYSQ ELAELKKAIGLLDPDNLEAAKAIARDSLRYLERMNLHQLKGAYCVYRLCERLNVPLSPIH RE >gi|333606354|gb|AFDH01000056.1| GENE 320 363546 - 365081 1262 511 aa, chain + ## HITS:1 COG:no KEGG:BC0635 NR:ns ## KEGG: BC0635 # Name: not_defined # Def: spore germination protein KA # Organism: B.cereus # Pathway: not_defined # 32 511 19 494 500 589 61.0 1e-167 MSLYRKLLRAARNSGPGEHLLEPAKPPQASDSIAINIGYLQHGLCYTEDMKQQPLPFAGA DGMLVYLESLVDQDKIQLHVVQPLHENTGQEPDNLFNILETTREIQLDNAVQALIQGKCV YFLEGLQGFYVLATEAVYKRSVEEPENEGVIRGPHYGFIEVLNVNLFLIRKLIASPYLTV RYYKAGTHTQTRIAIVYMNNIANAELVQEVEERIRAISADTVLTTGIIQEMTEDHPFSVF PQHLATERPDRTASNLMEGRVAILTEGSPTVLIVPVTFFAFYQSPDDYNGRWIVSSFVRM IRMFSFLLAFTLPAIYIGTVSFHPDILPLELVHTIKSSLERVPFPAIVEAMLLELIFELL REAGIRLPSRVGQTIGIVGGLVIGDAIVRAGLVSYTMIIVVSLTAIASFLVPSHEMSSAV RILRFPLMIAASIFGYVGIAFGLMLLTIHLCKLESFGTPYFSPFAPLRIKDMKDVFVRFP SWLLTARPHDANPKIMKQEEATSRSWKRDED >gi|333606354|gb|AFDH01000056.1| GENE 321 365071 - 366168 1166 365 aa, chain + ## HITS:1 COG:no KEGG:BcerKBAB4_0547 NR:ns ## KEGG: BcerKBAB4_0547 # Name: not_defined # Def: spore germination protein # Organism: B.weihenstephanensis # Pathway: not_defined # 6 363 5 361 368 321 49.0 4e-86 MKIEPKDTITQGQLFLLIIKLQIGVGILSLPYRLHQLAKGGGWISVLIAGVFLQLILVMM WMLMKRFPSYSVFRIASAVTGRYAGAFIGIAYVAYFLLVGGVVMMGAFDIINRWILQNTP RWAVLFLFMLTGVYLIRGTFRTITRIFILFTFLIGPMMFLIGYGVHRANFLYLLPLNEAG IWNILISSKETITAMYGFELILIIYPYVKGNHAGKLKAVSAGTWFVVLFYAFTVFTCMAV FSPHQLNMIPEPVMYLLRSLPFGAMDRADLLFLPIWMISMVASMTGYCYAAAFGIGHLLK HKNHKKAAPFAVIISCAIAYLPQTKDQFELFSYIADASAYFFLIGFPLLLLLLSYALKKK EGETA >gi|333606354|gb|AFDH01000056.1| GENE 322 366165 - 366962 875 265 aa, chain + ## HITS:1 COG:no KEGG:BCG9842_B4668 NR:ns ## KEGG: BCG9842_B4668 # Name: gerKC # Def: spore germination protein GerKC # Organism: B.cereus_G9842 # Pathway: not_defined # 2 265 3 264 374 244 45.0 3e-63 MKRAGRIGTVLLLLAVLPGCWDEDSLRNARLGYGAGYDLTPDGRLMQTMEVVDESKQTEQ QGSAKNEVESGVGYSVRQTSDIIRTKVTGDIRYFKYGFMLLGRSVAEKDLYPYLDVLYRD PRNPTSRVKIAVVDGSTNEMLRLKKAGNILIGEFITRKIESLEEMSVFPELSLETMLTLL LDPGQDFVLPYLKQDGKNVDAIGIALFNGQRMTGSLNVEEAILYSLLSGSHKDTARFVRK IKEGDRSNLENYITFDAGGKKANEN >gi|333606354|gb|AFDH01000056.1| GENE 323 366959 - 367288 304 109 aa, chain + ## HITS:1 COG:no KEGG:BCG9842_B4668 NR:ns ## KEGG: BCG9842_B4668 # Name: gerKC # Def: spore germination protein GerKC # Organism: B.cereus_G9842 # Pathway: not_defined # 7 108 270 373 374 99 45.0 6e-20 MKVQVQDRKVDVYLDLKLPVRVTEFAEDHLHQKDTVHRLNEDLSALLTRDAEAVIEKLQE SGCDAFGIGRQLMARHPKLWKSMDWLQEYQNVRFHPKVNVEIVGSGVFN >gi|333606354|gb|AFDH01000056.1| GENE 324 367316 - 368110 256 264 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 12 245 6 238 242 103 31 1e-20 MPEKQNGQTPAVLVTGGSTGIGRGIALAFAAAGYRVAITHYRDGDAAAAAAEEISRLSGA PCGVIEGDLRKLETAEGTIPDALRILGRLDILVNNAGIGLYGRIQELPAENLDSLYGLNF RAPLLLMRDASRHMIERGIRGCILNITSSRAERAYPKDAAYGGLKAGLERASEAAALDLA PYGIRVNCLAPGAVLVREPEPQLDKFAETVPLGRIGLPDDIGQAAVWLASGQASYVTGIS LRIDGGLILPGMPEDGSASWNSGV >gi|333606354|gb|AFDH01000056.1| GENE 325 368133 - 368651 440 172 aa, chain - ## HITS:1 COG:no KEGG:OB0286 NR:ns ## KEGG: OB0286 # Name: not_defined # Def: hypothetical protein # Organism: O.iheyensis # Pathway: not_defined # 11 142 8 140 163 132 46.0 8e-30 MLKPKTIEADWGGHLVKLTWIAAATPPEKDVTSVHGVCFYEGKILLVRVKTRGFNLPGGH VEAGETPREALHRECLEEGCAEGVIRPVGMIEVSHENNPNFDPGGKYPLIGYQVFYRMDI TACHPFTRENECTARIWVEPGELPHVIEDHELILCAVEAALDTGPVSPPLDD >gi|333606354|gb|AFDH01000056.1| GENE 326 368740 - 368844 118 34 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKKPVDIGIVLSQLDLAWQKWLDYRPPQNHKQPV >gi|333606354|gb|AFDH01000056.1| GENE 327 369056 - 370138 1213 360 aa, chain - ## HITS:1 COG:L188881 KEGG:ns NR:ns ## COG: L188881 COG4767 # Protein_GI_number: 15673730 # Func_class: V Defense mechanisms # Function: Glycopeptide antibiotics resistance protein # Organism: Lactococcus lactis # 3 298 2 286 354 146 33.0 7e-35 MFSFYLFPISYAFLTFPIAAVLFTLPFLIVQYRKYGYVHFYRALLLYLFLLYMMNALYLI ILPLPPSIHNAPPAVESYAQWIPFHFLEDILKETAVVADQPRTYLHLLKERAFLQVLFNV LLTVPFGIFLRYYFRTSWVKCLLFSLGLSLFFEITQVTGLYGIYDYPYRLFDVDDIMTNT VGGMIGYVAAEWLSSLLPKIESLDDKVDLAVKRVTYTRRGLAFLFDWFVMSPVLAILAVL NVPLPYAAGVVLYFIVLPYFTNGQTLGKWIVRIRLTGKSDKITIYELFVRYGLLYLFVGG LNQLYIRAGIENLPDILMVIATFAMFLFNVWFAIHVLRCVFNRNRQLFYEKKSGTRHVIK >gi|333606354|gb|AFDH01000056.1| GENE 328 370568 - 371365 810 265 aa, chain + ## HITS:1 COG:BS_motA KEGG:ns NR:ns ## COG: BS_motA COG1291 # Protein_GI_number: 16078433 # Func_class: N Cell motility # Function: Flagellar motor component # Organism: Bacillus subtilis # 1 265 1 267 270 282 54.0 4e-76 MEKSSIIGIILAIIAVGVGMVLKGASLTALFNPAALLIIFVGTAATLFIGFSGEELKNFP KLLKIVFTEQKLMPKKDLINMVADWTALTRREGLLSLEEKVNEIDDPFLKSGMRMIIDAN DQDFVREVLMEDIAAMEDRHRNGAQIFTQAGTYAPTLGVLGAVVGLIAALSNLNEIEKLG HLISAAFVATLLGIFSGYVLWHPIANKLKQKSKKEVMLKLMMVEGLLSIQAGISSSAVKQ KLLVFVPSSQREDEDSSKQSGMDNE >gi|333606354|gb|AFDH01000056.1| GENE 329 371358 - 372158 618 266 aa, chain + ## HITS:1 COG:BS_motB KEGG:ns NR:ns ## COG: BS_motB COG1360 # Protein_GI_number: 16078432 # Func_class: N Cell motility # Function: Flagellar motor protein # Organism: Bacillus subtilis # 1 260 1 261 261 215 44.0 8e-56 MSKKHRKEHHEEHLDESWLIPYADLLTLLLALFIILFASSQVDSKKYDSIMRALNSAFTG GTGTFETSAKIPLNQDTSTALKKHDNPNPSESEALQKQYEAEQADLEKLKQKLDQYITDN KLGSELTTTLNDDQLMITIQDKALFASGSAVIKPESRLLAQAMTDMLSQYPKYRIEVAGH ADNVPINNKEFDSNWDLSSRRALNFMKILLENNAIDPSRFRSIGYGEYRPVDSNATSEGR SKNRRVEVSIMRGIKASDVKKTAAGE >gi|333606354|gb|AFDH01000056.1| GENE 330 372369 - 373421 580 350 aa, chain - ## HITS:1 COG:no KEGG:PPE_02441 NR:ns ## KEGG: PPE_02441 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 19 347 24 352 352 171 32.0 6e-41 MKRPAILDEIHALHPNEAKGLLLQMLEQAQRYEELPEKEHALQKQILEIWNGHLARNRAE NEGRAGHVHIVMGLSEAGALKCALSSLGRRKESEILTFNDCFSEGPIRELETEEGRKFRL EWMSESFNGYGYAQLTGIRHGSDTILETMRGLPADKDITIWTGNHAHEQIGMRLALSVLR DAPNNVYIGQVSQLYEGIAARFDPVPHSYAFGFLCIEAIEEIVRIHEKQKQPLSEQARQA YIREWQELSASDAKLHIWSDGKIVPAAEESYDEALAALVGQMQRGSSDDEEEFIPASRVI MEALESWGNTVMVEFIEYRLWTLISDGRLKFKGVPAAMQSYKVALAESSC >gi|333606354|gb|AFDH01000056.1| GENE 331 373632 - 374630 1042 332 aa, chain - ## HITS:1 COG:FN1498 KEGG:ns NR:ns ## COG: FN1498 COG0697 # Protein_GI_number: 19704830 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Fusobacterium nucleatum # 19 298 5 283 299 102 35.0 1e-21 MENALGLNGKSALMKGKGINGIWYVALGATLWGLDPLFRILLLKSLTSAQIVFIEHLLLA CYALPVLIRYREQLSGKLTLAVIGALLFISWGGSAIATILFTSAFAHGSANAVLLLQKLQ PLFAITLARVLLKEALPARFFKYIFFALAGTYLLTFGFQSPSLGLKDLGTMSCLLSILAA ILWGGSTVMGKYLLQKNLDFPIVTSLRFLLAIPLLFVVLMASGDAWQLHKATGEWALIVV NLLFQAFFPGLISMLLYYKGLSSTKAFLATIAELSFPAVGVLINWLVFDQALTIGQLAGF LLIWSTLWFMGRTPESKAAASGANEKLDASAV >gi|333606354|gb|AFDH01000056.1| GENE 332 375190 - 375402 58 70 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MDNKFNINKTYLPLVLTAEQIIQVLGIGRRAGYELLKAPPFPVRRLGKRGTIKASRDALF NWLESKESGA >gi|333606354|gb|AFDH01000056.1| GENE 333 376049 - 376435 160 128 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|325661459|ref|ZP_08150085.1| ## NR: gi|325661459|ref|ZP_08150085.1| hypothetical protein HMPREF0490_00819 [Lachnospiraceae bacterium 4_1_37FAA] hypothetical protein HMPREF0490_00819 [Lachnospiraceae bacterium 4_1_37FAA] # 2 127 820 944 1106 108 54.0 1e-22 MLNIADNLDKVGKIAEYANSIGVNIEPIMFRKSVSEYMMAKEENAIYKGIRSIKYLNEQI ANELYELKDNTYETFCDLLVDIFEKTSCDSRQLQILIKLGFFKEFGGNKELFNIYVEFIG GKDAYKKI >gi|333606354|gb|AFDH01000056.1| GENE 334 377586 - 378095 205 169 aa, chain - ## HITS:1 COG:slr0603 KEGG:ns NR:ns ## COG: slr0603 COG0587 # Protein_GI_number: 16332330 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit # Organism: Synechocystis # 18 169 244 397 897 67 32.0 1e-11 MKAKGATYGDEDSFDLTFKSYEELVDKFEEQSAIPRHAYLEAIHNTNEMADMVEEFTLDS SPKYPKLYEDSEKVFKEKINEGIIARGTNKLPSEHKKRYYERVREEFDTYKKLGTIDYML LQKNIIDYCYTKEIYPGYGRGSVNGSLIAYLLKITEMDSIKHKLNFSGF >gi|333606354|gb|AFDH01000056.1| GENE 335 378575 - 378778 78 67 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|325661459|ref|ZP_08150085.1| ## NR: gi|325661459|ref|ZP_08150085.1| hypothetical protein HMPREF0490_00819 [Lachnospiraceae bacterium 4_1_37FAA] hypothetical protein HMPREF0490_00819 [Lachnospiraceae bacterium 4_1_37FAA] # 2 59 1 56 1106 64 50.0 3e-09 MLKDNYTVYHVHSDLSNPTTSMSMDSTTKFEQYLRLASKLEMKSFCFSEHGSIMNWIKKN RQSKNMV >gi|333606354|gb|AFDH01000056.1| GENE 336 378925 - 379089 125 54 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTKKLVTILSTSLLVASLSSVTSVSANSSDVSPKVAEKSLISPQANSGWKNKMV >gi|333606354|gb|AFDH01000056.1| GENE 337 380060 - 380506 147 148 aa, chain - ## HITS:1 COG:MT0066 KEGG:ns NR:ns ## COG: MT0066 COG2110 # Protein_GI_number: 15839437 # Func_class: R General function prediction only # Function: Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 # Organism: Mycobacterium tuberculosis CDC1551 # 8 145 7 147 352 60 30.0 9e-10 MSVKIVQGNLMEATEDIIGHQVNCMGVMGAGLAKLIKRDYPEVFMQYKQSCSNKGELLGH CQIISTQSEKYIANLFGQYGYGVQKRHTDYIALRGALSELKSLAMKSEQSIALPYNIGCG LAGGDWDIVEQIIEEVFIDYDVTLYKFE >gi|333606354|gb|AFDH01000056.1| GENE 338 380849 - 381319 -18 156 aa, chain - ## HITS:1 COG:BS_yqjW KEGG:ns NR:ns ## COG: BS_yqjW COG0389 # Protein_GI_number: 16079428 # Func_class: L Replication, recombination and repair # Function: Nucleotidyltransferase/DNA polymerase involved in DNA repair # Organism: Bacillus subtilis # 1 156 256 412 412 183 54.0 1e-46 MTLPRDYCEPWEIEVVLLDITNEVTKRARNKCLMGSVVSVGCMGADWDHPTGFHRQMKMP DPTNVSGDIYNVVKKIFYAHWDRQPVRKLSVSLSDLSDANTYQLSFFEDSEKKRTLDNVM DSIKDKFGEIAILRASSVTSAGQAKDRAAKIGGHYR >gi|333606354|gb|AFDH01000056.1| GENE 339 381607 - 381768 107 53 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKYLLIAQIQCISSLIDQKKWLQKFNAKLELKLVYMREPVLEKTKPYQSYAVT >gi|333606354|gb|AFDH01000056.1| GENE 340 382297 - 382830 -243 177 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLITLSLLFSSLGFSVHAAPQEDATYTEFLTTENKTGVIQDQLIEPQAANFSCNTGGWIV GSSGATQFTSQISLNGTLAWGLQLTPLGADLFGPMTTVWASYGSVEKSGSTRVLFPASIY TPHNLAYPGMYHGSISKYNYVGSSSPGSLEPGDVINLQFNLAGSSGATGIASISCRY >gi|333606354|gb|AFDH01000056.1| GENE 341 382912 - 383262 125 116 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229000840|ref|ZP_04160341.1| ## NR: gi|229000840|ref|ZP_04160341.1| hypothetical protein bmyco0003_53480 [Bacillus mycoides Rock3-17] hypothetical protein bmyco0003_53480 [Bacillus mycoides Rock3-17] # 34 113 3 83 85 77 49.0 3e-13 MENPDKNHVKNSYSEIINTDKVGSTQANLHITGLTWFEEEMTFETIREAEEWVYSDAYNK IGHEYDGYKTTDPKLAYALLYHLVRAKTLRIDSREVLADEQIVDNKTVFMVWIPKS >gi|333606354|gb|AFDH01000056.1| GENE 342 383289 - 383507 80 72 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSEYKISPASEAFISRYYCDKEPRVIKPLFNQIYTINEEKYKFTETIMEEMRDSGLVKIL SVDKQSANIIGL >gi|333606354|gb|AFDH01000056.1| GENE 343 383509 - 383883 64 124 aa, chain - ## HITS:1 COG:DR2630 KEGG:ns NR:ns ## COG: DR2630 COG0207 # Protein_GI_number: 15807610 # Func_class: F Nucleotide transport and metabolism # Function: Thymidylate synthase # Organism: Deinococcus radiodurans # 1 124 264 387 387 186 67.0 9e-48 MALPPCHYAFQFYVADGKLSCMFQMRSTDYFLGLPFNIPSYALLTMMVAQVCGLGLGELI YSGGDIHIYSNHFEQVNKQLIREPKSLPKVYLNSNIKNIDDFAMLDFILDDYNPHPGIKA PVAI >gi|333606354|gb|AFDH01000056.1| GENE 344 383979 - 384065 102 28 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSGVMMRLVNWGGYMGLSGVLGKRLMAK >gi|333606354|gb|AFDH01000056.1| GENE 345 384376 - 384660 139 94 aa, chain - ## HITS:1 COG:SP1997_2 KEGG:ns NR:ns ## COG: SP1997_2 COG4696 # Protein_GI_number: 15901820 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 17 90 95 172 183 88 56.0 4e-18 MLEELAEFLTAESIEDQADALIDLIYFAYGTFVEMGLRPDKLFDIVHAANIGKLWPDGKP RFNEQGKWVKPLNWEAPEPKIKKEIEKQIRQQSV >gi|333606354|gb|AFDH01000056.1| GENE 346 385051 - 385545 -53 164 aa, chain - ## HITS:1 COG:no KEGG:BSU20050 NR:ns ## KEGG: BSU20050 # Name: yosQ # Def: SPbeta phage endodeoxyribonuclease # Organism: B.subtilis # Pathway: not_defined # 1 100 70 169 173 117 60.0 2e-25 MVVNHKDGNKTNNHVNNLEIITYKENTRHAYDNGLMTPLHGQENSMSKLTNIQAKNLISD ILNGLTNSELALKYGLHDRYISLVRHKKRWKKLWSEFGTSEAEISKGNDKNKSLTPEQFV VIVNKIRIGYTNAAIEREYGLSSGTCSRIRNKKLYLNWWSEYIT >gi|333606354|gb|AFDH01000056.1| GENE 347 385774 - 386703 265 309 aa, chain - ## HITS:1 COG:BS_nrdF KEGG:ns NR:ns ## COG: BS_nrdF COG0208 # Protein_GI_number: 16078802 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, beta subunit # Organism: Bacillus subtilis # 1 298 20 321 329 322 57.0 5e-88 MFWEQNTKQFWLDTEIPVSKDKKVWESLTNTEQEIYMKVLAGLTLLDTEQGGVGMPKVLQ HVDDLQEKAVLAFMAAMEQVHAKSYSTIFTTLATKKQIDDAFKWAEENKWLQAKAKKIDS IYEEIKDDYTLAKALIASVFLESYLFYSGFYYPLYLAGQGKLKNSGEIIFLINRDEAIHG VFVGLLFQKTRSKLSKTNQKNLEDFAHKLLDELYQIEVKYSEAIYDTLGITSDVKRFVRY NANKAMMNLGYDSLYPYEEVNQIVLNGLTSGGTFDFFSLKGGSYVKAKVEPLREDDFHIL SNRMAGWKK >gi|333606354|gb|AFDH01000056.1| GENE 348 386777 - 387040 87 87 aa, chain - ## HITS:1 COG:BS_nrdE KEGG:ns NR:ns ## COG: BS_nrdE COG0209 # Protein_GI_number: 16078801 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, alpha subunit # Organism: Bacillus subtilis # 1 87 615 700 700 111 63.0 3e-25 MPYLDESNFFFYKEAYDIDMFKMIDLYATIQKHVDQGISCTLYLKDTMTTRDISLYYIYA WKKGLKTLYYSRMKMTQIDDSCVSCVV >gi|333606354|gb|AFDH01000056.1| GENE 349 388869 - 389222 140 117 aa, chain - ## HITS:1 COG:BS_ymaA KEGG:ns NR:ns ## COG: BS_ymaA COG1780 # Protein_GI_number: 16078800 # Func_class: F Nucleotide transport and metabolism # Function: Protein involved in ribonucleotide reduction # Organism: Bacillus subtilis # 3 117 4 119 130 119 51.0 1e-27 MIVIYDSKTGNVDRFVKKLNLECYKVVPQLKVNKPFVLITYTTGFGQAPNTTLEFLESNF VFLRGVASSGNQNWGKSYAKAADIVSKQYSVPVILKFELSGTEEDINKFILEVRNIV >gi|333606354|gb|AFDH01000056.1| GENE 350 389316 - 389555 158 79 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKFYAIVNNEEGKSVILESAQNTRHMAEKDVLAQCRDKGYKFKHLHLLQGSQKQGGVNTK FFKDRKRTGKNGKRYASFM >gi|333606354|gb|AFDH01000056.1| GENE 351 389885 - 390028 63 47 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MHNIVLHFLRIVYTTGFVISNHPPVLSMMSEHIRKPFKLNLVDFKML >gi|333606354|gb|AFDH01000056.1| GENE 352 390420 - 390698 81 92 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MALLAAAAAHKRYAHKLATFMYHDSLTNLEGKLEHVHDTLGELRRVKDQYDRELLMKTKI SQSKLDEVKKCKDDWYISAEEALELGIIDEML >gi|333606354|gb|AFDH01000056.1| GENE 353 390940 - 391125 126 61 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MYNAKDVSEKGYEAIKTADNLTDPPTIKKVENLATENGLDTFEITKITESTTRYIVDRKN D >gi|333606354|gb|AFDH01000056.1| GENE 354 391204 - 391476 126 90 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNQDIHSYFGLSYANYLVLPRTVLQSMPMEWQIKFVELLEELDDTNWRIELMPKNWMDYL VKVRDKNGRFISDPLDNYDRGRRKVFNNEQ >gi|333606354|gb|AFDH01000056.1| GENE 355 391473 - 391949 134 158 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MPRPRVYKLEHLAAVEAGQDSNLYFKTTWSDEDLTMLIKVWMYKIADYVPEYEFYEEEMM ELLETFGHKQIPADSPFKTYYSADMYEIWEAANIRPTEDDKSNPRFYNDNANKVFEKVLK RNDDEFLEHALKNDNYKKYNEYARRDFDKVAMRNGITV >gi|333606354|gb|AFDH01000056.1| GENE 356 391979 - 392158 164 59 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLEISRVADTLVNQAAIFNCTFKKAWKYYMHPALTENFSYEDIVSYINEKMNLGQEYLK >gi|333606354|gb|AFDH01000056.1| GENE 357 392186 - 392530 178 114 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLEEINTYDWKEAFGYANSVFTVQFAKPVSTKPFSREDVVEIIAMDDGENDASNWIGVFK LKDGRYAIIDAGCDYTGWDCQAWGSVEVTGSLEEAIRFGLDNYQRNRLNLRISE >gi|333606354|gb|AFDH01000056.1| GENE 358 392542 - 392607 60 21 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKNEIKSKVTEIFRILQNTDL >gi|333606354|gb|AFDH01000056.1| GENE 359 393235 - 393723 150 162 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_1083 NR:ns ## KEGG: GYMC10_1083 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 8 161 51 202 203 102 41.0 7e-21 MVKASTSNLNSTYNGSAFTNGIAKWNGASGAHIAIQSSTVANANVDLHSVTKAQWNSNGW GTTTYALTIPYNNGVACASGAPFSDPNDLCPTRTDYAAIYFNEGYEYSDQVKKEATVAHE IGHSVGLSHTTYIGVQSIMAQGLSKGTNVTAYDIAELNSLYP >gi|333606354|gb|AFDH01000056.1| GENE 360 393782 - 394324 -83 180 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_1082 NR:ns ## KEGG: GYMC10_1082 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 7 179 21 198 200 99 33.0 8e-20 MSRTKLFVGQYISTSSVHSENHLAVADSNLPLNEQVWGTQVAIKGTVLKQEVSSVREADV PGQGFSFPVTPATIQVTEVLYGDVDTKQLTLLQHGSDDDKKSAKHFVKVGQEYILLLTKT DDGKYWSYNYDDGVWNVENGKVTKNTEQISKSLMTMSDKSEKVFKDEIVKAIKNQKKSSQ >gi|333606354|gb|AFDH01000056.1| GENE 361 395119 - 395565 60 148 aa, chain - ## HITS:1 COG:no KEGG:BAMF_0602 NR:ns ## KEGG: BAMF_0602 # Name: not_defined # Def: hypothetical protein # Organism: B.amyloliquefaciens_DSM7 # Pathway: not_defined # 46 147 183 285 286 67 33.0 3e-10 MLTKEGGMYIAQSNYSEPSQSAYTISPQATEYRSNRIDIEARNALGLQQLTMYTKGEFSF ERGVKAKATYGEGDYGRTFWGSSINVTNMEFGKFYEDPESGYAEVYSKMHVDSMLGFKGL GLVLNSDTVRIHVGCSLIGAISAGIRRN >gi|333606354|gb|AFDH01000056.1| GENE 362 396574 - 396795 99 73 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLEKVLRIFGYYKKDSWVLRSLEELIEANTSAIVSMEKHADTGEFYSYIKGRRSGLQDAL AIMENYYSKKIKK Prediction of potential genes in microbial genomes Time: Sun Jul 17 09:07:43 2011 Seq name: gi|333606338|gb|AFDH01000057.1| Paenibacillus sp. HGF7 contig00226, whole genome shotgun sequence Length of sequence - 42458 bp Number of predicted genes - 19, with homology - 15 Number of transcription units - 9, operones - 6 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 17953 2549 ## COG1020 Non-ribosomal peptide synthetase modules and related proteins - Prom 18055 - 18114 5.1 2 2 Op 1 . - CDS 18623 - 18835 191 ## 3 2 Op 2 . - CDS 18892 - 19629 83 ## COG3208 Predicted thioesterase involved in non-ribosomal peptide biosynthesis 4 2 Op 3 . - CDS 19686 - 20357 267 ## LLKF_1216 PKS biosynthesis protein 5 3 Op 1 4/0.000 - CDS 21827 - 24580 153 ## COG3321 Polyketide synthase modules and related proteins 6 3 Op 2 . - CDS 24597 - 26642 234 ## COG3321 Polyketide synthase modules and related proteins - Prom 26748 - 26807 6.2 7 4 Op 1 . - CDS 29288 - 29752 194 ## CKR_1606 hypothetical protein 8 4 Op 2 1/0.000 - CDS 29758 - 30315 -36 ## COG0331 (acyl-carrier-protein) S-malonyltransferase - Prom 30353 - 30412 4.1 9 4 Op 3 . - CDS 30566 - 32464 288 ## COG3321 Polyketide synthase modules and related proteins 10 4 Op 4 . - CDS 32480 - 32758 175 ## - Term 33567 - 33607 11.5 11 5 Op 1 22/0.000 - CDS 33661 - 34635 -100 ## COG0842 ABC-type multidrug transport system, permease component - Prom 34676 - 34735 4.2 12 5 Op 2 45/0.000 - CDS 34785 - 35933 132 ## COG0842 ABC-type multidrug transport system, permease component 13 5 Op 3 . - CDS 35954 - 36901 465 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein - Prom 36944 - 37003 5.8 14 6 Tu 1 . - CDS 38337 - 38768 97 ## COG0250 Transcription antiterminator - Prom 38838 - 38897 6.7 - Term 39024 - 39057 2.1 15 7 Op 1 . - CDS 39213 - 39335 68 ## 16 7 Op 2 . - CDS 39346 - 39543 105 ## - Prom 39651 - 39710 3.1 17 8 Tu 1 . + CDS 39581 - 40699 532 ## COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily - Term 40722 - 40770 11.8 18 9 Op 1 . - CDS 40838 - 42022 669 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase 19 9 Op 2 . - CDS 42015 - 42458 256 ## COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes Predicted protein(s) >gi|333606338|gb|AFDH01000057.1| GENE 1 1 - 17953 2549 5984 aa, chain - ## HITS:1 COG:BS_ppsC_2 KEGG:ns NR:ns ## COG: BS_ppsC_2 COG1020 # Protein_GI_number: 16078893 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Non-ribosomal peptide synthetase modules and related proteins # Organism: Bacillus subtilis # 3638 5110 2 1504 1505 988 37.0 0 MLTFALCAFAENSERKVRDISFVSDEDRDKILTLFQTKPTQYPHGESIKSLFEAQVKKTP DRIAVSCGTEQLTYAELNAKANIVANRLLAAKVKSETGKGETMVALLLERNMDMVIGILG IVKAGYVYVPIDPEAPQDRIQYTLADSGASLLLVNQGKEQMVSLPQGSIYAIEHLYSDEP DAAWGPELKANPDVAIAPQDALYIIYTSGTTGEPKGTVIEHECVVRLMHNDDMPFDFHEE DVWSLFAAYNFDVSVWEMYGALLYGGHLVVIPNDAKKDSYALLDLLREKRVTVLNQVPSS FYNLMQVELAEAGERLHVNHLIFAGEALQVGKLKAWQAKYPEMNIVNMYGITETTVHVTY KGITAEDIALDVNDVGKALPTLKVYILDGDKLCGIGVPGELCVAGVGVARGYLNKPELTA EKFIENPYGEGKLYRSGDLAKWLPDGNIAYLGRMDDQVKIRGFRIELGEVENALRQLEGI QDAAVIVRDTHDGEKALFAYLISKDIVQLQAVRRDLEEVLPAYMVPAYMMQIEQLPVTRN GKLDKRALPEIVAVSEKEYMAPKNELEAQLCSIFSEVLGVERVGTQDSFFELGGDSIKAI RIVSKLRSAGYHIASKDIMQKYTVEAISYAAQKSALAEQYEQDEVNGIVPLTPIVREFAS WNLPKPHHFNQDMLMEIDLEEENQLQEVLDALMAHHDILRSVYRQGQLEIVGMSDSKAYD LKVYNYLEEQAAAELMEAACTDLHSSIHLEEGPLVKAAMFRTAAGNLLFLGIHHLVVDGV SWRILQEDISTAIRQIKEGTKIQFPAKTASYKAWAEALAEYKDSHLLQKERAYWEQVAAQ MAAGELRMDEQTGESGYDNYTIHLSVEETESLLQRAGKVFRTEVPDLLISALGMSVRKLT GASVVTIGVEGHGRETIHKRIDIDRTIGWFTSVYPIMVACHDEMAESIIATKEMLRKIPN RGVGYGLLYDLLTGNQLPTLLFNYMGQMDAEAKGKKIHFLSSSNGLADENKMLSELFING VISEGKLSFTFRYNRGLFSNVTIQRFAEVYKAHIQSTITYCMQLEESVPTPSDYHAADLT RADLSVIQHVTGGAFQIDRIYGLTSLQKGMLYHSIAEPESTAYRNQNIFIGQGYADEHMV KQALKLLVMRHEVLRTAIIHKNISIPKQVVIRGREVEYERTDLTGVEPSLQAKQVEALAH DQIQRGFDLEQDPLLRVHHVVLARDRYQLIWNFHHILLDGWSLPIIYGDFNRIYKALEKG VLTSTLETQVITEKQYQDSYEDYISWLEKQDQQKGLSYWLDVLAGYEEVAEIKPIYTPQE SEQQVQSLAITLSPEDALQLRELIAAHQLTVSNVVETAWGVVLQAYSGQKDVVFGKVMSG RQADVRGIEGIVGLFINTIPVRVASKEDMSTLELIKEMQQQGTESEQYAYCSLAEIQAQT EQKQHLIQVLYMFENYYVDEDKLTDFMYEIEYGLDQTNYSLTLCAYEHEGKIVCEIIYNP NVYAREDIEQIVVRLEHVIQAIVANPEGKLSELETITEEEQEQILGVFNDTSSLYAKDKT IPALWEEQVANTPDAIALVYEDNYMTYDALNKKINQVAWALRRLDIKPDDRVVIVAERSV EMIAGMYGIIKAGAAYVPVDPTFPAERIQFILADCKPKAVLVYKATIETGLPTINLADDM LWEGISDNPEQINRPNDLAYIIYTSGTTGQPKGVMLEHQGVVSLRHHLLKQYNVTSQDNV LQFANYVFDASVWEMTLSLLLGATLTLVSKSIIADVTRFNSFVQESRITLAVLPPQYYLQ TAFTGVRWLTTAGAATNESVIEQTRNSDCGYCNAYGPTECTVQATYWEYDGISDVPNNIP IGKPIANNHVYILDGDKLCGIGVPGELCVAGDGVARGYLNKPELTSKKFVANPFVPGERM YRTGDLAKWLPDGNIAYLGRIDEQVKIRGFRIEPGEVENALRQLVGIQDAAVIVRETHDG EKALSAYLVSKDVVQLQAVRQELEEILPAYMVPAYMMQIDQLPVTRNGKLDKRALPEIVA VSDREYTAPKNELEAQLCSILSEVLGVERVGMKDSFFELGGDSIKAIRIISKLRSMGYHI AIKDIMQRNTVGAISYAVQKSVIEEQYEQDEVSGIVPLTPIVREFASWNLSNPHHFNQDM LMEIDLEDEKQLREVLDALVVHHDILRSIYREGQLEIVKANDSRAYELKVYDYNEEQEAA GLMEVVCTDLHSSIDLEKGPLVKAAMFRTGEGNLLFLGIHHIVVDGVSWRILQEDISTAI RQVKEGTKIRFPAKTASYKAWAEALAEYKCSPLLQKERAYWEQVATQMESGALSMDEQTG ESGYGNYTIHLNEEETTQLIHQAGRAYNTEINDLLISSLGMTVKKLTGARDVTIGMEGHG RESIHKRIDIDRTVGWFTSVYPVVVSCHDEIAKSIITTKEILRKIPNRGLGYGLLQEELS VRPLEIMFNYMGQMDAEAKGKKLHFFSSGKGLADENKMLSELFINGVISERRLTFTFRYN KGLFSSSTIQRFADIYKACTQSMIAHCMQQEETVRTPSDYSAISITDEDLSVLHRLYPGK NDIQDIFDLLPLQEGILYHGLKSSGSEYLTQFIYRINQHIDPNLMRSAFQCLLKKHDVLR TAMVYEGLKHPKQIILSHGSLDWEEIDLTTYDEKEQLARLNELIEMDVKRGFDLQLDALF RIKTIKLSTNCTQLIWSFHHIIADGWCSELLCNDLKNYYNLLQDGYSTHDVEQVIEQEKF QVATYGDYIQWFQNQDEELALTYWRERLRDYDLTYKYRPYFDPPSSNSNLAQVKKKLDVE LTGRLLLLAQAHQLTINTITEAAWGIVLQQINFTNDIVFGKVISGRHAEVRGIEKIVGLF INTIPVRVSADENSTIISLLQELQDQGIESTMHAHCSLVKIQEQTAQKSDLISSLFVFEN HLAQEQQSEHTDGLQLALVSSRDETNYPLNLLAAVEDKALRFTVLYNPNKHALEEVEMML SMLNNVLCAFAESPEKKIFDVELIRKEDKARILGEFNNTASTYPKHKSIPDLFEEQAQLT PDQICVVCDKEQLSYQQLDKAAQGIATELRKRGVSSGQLIGIVCEKSVHMIVGLLGILKA GCGYVPINTDEPDTRLRFILEDCDLNIVLCGDVKGDMINVLQEYCTVIDLNGSYAAMTER ALVTADDIAYVMYTSGTTGYPKGVCVTHQNVVRLVKQTNYADLNGAHILLTGALSFDAST FEIWGALLNGGQLVLAHTQSITDGNMLGMLIYEHQITMMWMTAQLFNYMVDTRCEVFQPL QYLLVGGERLSAKHIKAVREKHPKLRVINGYGPTENTTFSVTYAIETDYFNIPIGKPINN STAYIMDRKMQLCGIGVPGELVVGGDGVAKGYMNQPKLTVEKFIENPLIPDERLYRTGDI AMWLPDGNIAYIGRIDDQVKIRGYRIEAGEVEHALRRLEGIQDAIVIAREQDGSETELYA YLVSSTEIQMNEVRNSLGKTIPAYMVPQHMIQVENVPMTRNGKVDKRALSEIQIVHEQQY TAAATELEFTLCNIFGDVLSVDRVGIYDDFFALGGHSLHAVRVINQIEAMIGIRLPIITL FENPHIKALSQHLELISAEHTTHNTLYTKAVFEPIPHAMRKESYRMSSAQKRLYAIQEMD QHSTAYNMTLLRRMDASLDSERLQLALKQLIQRHESLRTSFHMENGEAVQRIHDHVPFTL LITEDEDDDTGFVRAFDLSQAPLIRVKVNNQKEGGYLLAFDMHHIISDGASINNLMQDLS KLYNGEPLESMPIQYKDYSEWLHTQDMTEHETYWLNSLQGELPVLNLPTDFTRPQVQQYT GKAVVSHVELREAVTALCRMSGATEYMVLLSTWMILLSKYSRQEDIIVGCPVNGRLHYDT EPLIGMFVNTIALRGKPSGKKNFVDFLSEMKEVCLKGIEHQAFPLEDLVDLMGLHRDMSR NPLFDVLFVLQNNEEADFDFYGINSTNVHDDYSLQHSSAKFDLTLEVTPMVSGYRIEVRY ATSLFQEESVRRMVKHYETLLAAVTQSPKLEICQLPMMTQAERQHILTSFNDTSCVYDVT TPIHEQIEQIVQAMPAKTALRFRDQALTYEQLNMRANQLARILLLHGTRRGDFVGILLGR SIEMMVGILATLKVGAAYVPIDPTYPLERIQYMVEDSGLSTVLTQRQYDDTIELPSHVRR IHVDQERCDEPSHNLHAIVEATDIAYIIYTSGSTGKPKGVMVEHRSISNLIAGLNQLQNL DSTKTMLCVSNISFDGTVYETLYALLKGMQIIIADEEAQHDPKLLLQLIEQYDVNIMKGT PTRMKMLMDEVRDVHPLHGLEVIVVGGEPLTDDLAAALLENWNIRLFNVYGPTEATVDAT GIEIHLHDKVTIGKPIANVQVFILDSYGSPLPIGVAGELCISGAGVARGYLNRSDLTAEK FVDNPFKQGERMYRTGDLARWLPDGSIEYVGRIDDQVKVRGYRIELGEIEHVLRKQPDVL NAVVMVREDAVGDDYLCAYVVPNDQVTLDTEAIREDIRQVLPDYMIPAYIVPLVQFPVTN NGKLDRRSLPEPDRKGKGNKYVAPRDQTESVLVNIFREVLGVERISIKDSFFELGGDSIK AIRIVSKMRNAGYLISVPDILSQYTVEKIAHTVGRESEIQYDQGEVTGQVLNTPILHDFF ARNYANPNYHNQDALLTVRTDNESHIHEALQAVAVHHDILRAIYRDGSLTILSSADSKLY ELQVFEVHADLNGSAWIEDASAIIHRSMDINKGPLMKAALFKTQSANYLFLCIHHLVIDA VSWRILLEDFETALQQLKDGKEIKLPSKTLAFKDWAEALEEYKNTNEITTQANYWNTIIA AMQEEKLFIDDDPHDHGFEDVTITFRKDKTEQLIRQAGKAFGTEINDLLISAIGAATHAL TKQSKVSVCLEGHGREAIHKKVDIDRTIGWFTVKFPISVPCHDDLRKSIIETKEMLRKVP LRGLGFGLLQGDYLAIESDIYFNYLGQLDTESNATLFTNNKSIANSNSTEGAIDMNGYIV QNMLHFIIRYDCSKYNRKTVERFAALYEEKLSDIITYCCVQDKPVKTASDYSCDDLTSDE LVQIQEYIADKEDIDDIYTLTPMQEGILYHYLLNRQSTGYVTQMVYHYNGNQSEHTFEAA LKLLTKRHEVLRTAIVYDHGAKSRQLLLRSREIEYAVVDWSGRDRAEISTWIDSDLQRGF DLQQEALLRVTNIMLSRTEGKLIWSSHHIISDGWSDNVIFNDFIQICEKLQQGLSVAELE QGLEEEKEKSLNFKDFVNWLEKQDEERSLLYWRELLLDYEESADIKPLRQPEETTSEMKR INHKLPVDVTRQLLNTAATYNITLNTMIETALGIVLQELCGIKDVVFGKVVSGRNADVRG IEHIAGIFVNTIPIRICCDDEMHICDIWRKTQEQAILSDRHGHCSFAKVQRLTKQNTDLV KVLFTFDNDDSWDEVRQSETSAFRFTVEDGREQTNYTTTFKAYLDISQLHVDVLYDPRKL AAEDMVNIMSKIQSVLLSCAANPEMKLSELETTTEEEKEQILGAFQTKPTQYPHEESVKS LFEAQVKKTPDRIAVSCGTEQLTYAELNAKANIVANRLLAAKVRSETGQGETMVALLLER NIDMVIGILGVVKAGYVYVPIDPEAPLDRIQYTLADSGASLLLVNQGKEHWVSLPQGSIY AIEHLHAEEPDAAELKANPDVAIAPQDALYIIYTSGTTGEPKGTVIEHECVVRLMHNDDM PFNFHEEDVWSLFAAYNFDVSVWEMYGALLYGGHLVVIPNDAKKDSYALLDLLREKRVTV LNQVPSSFYNLMQVELAEAGERLYVNHLIFAGEALQVGKLKAWQAKYPEMNIVNMYGITE TTVHVTYKAITAEDIALDVNDVGKALPTLKVYILDGDKLCGIGVPGELCVAGVGVARGYL NKPELTNKKFVANPFVPGERMYRSGDLAKWLPDGNIAYLGRMDD >gi|333606338|gb|AFDH01000057.1| GENE 2 18623 - 18835 191 70 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNNKIIWGIVLLALSLFLKPLLTIVGLNERLFGLYWQGETVFSLNPFLVRIILAVIGIIM LIMGGMQKKK >gi|333606338|gb|AFDH01000057.1| GENE 3 18892 - 19629 83 245 aa, chain - ## HITS:1 COG:PA2425 KEGG:ns NR:ns ## COG: PA2425 COG3208 # Protein_GI_number: 15597621 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Predicted thioesterase involved in non-ribosomal peptide biosynthesis # Organism: Pseudomonas aeruginosa # 5 232 7 232 254 150 34.0 2e-36 MGNEIKLFCIPYSGGSAEVYRKWSKSLSSDIQLFPVELPGHGKRIFEPLRDDIDTIVEDI TATIASNVASNDDYAIFGHSLGSLLTFETYYKLIENGVHKPQHIFFSGRNAPQNKHNQTS IHRLPDEQFLHAVMTYGGSTHEIIKNPELLDLFLPILRADFKISETYCYQEKKDKIACDI TIINGRNDRSAIIYDMSEWKYYAGGAATFHTVDGGHFFITENYEPVVDIIKQTLTISDKI LETQG >gi|333606338|gb|AFDH01000057.1| GENE 4 19686 - 20357 267 223 aa, chain - ## HITS:1 COG:no KEGG:LLKF_1216 NR:ns ## KEGG: LLKF_1216 # Name: pksC # Def: PKS biosynthesis protein # Organism: L.lactis_KF147 # Pathway: not_defined # 1 207 1366 1557 1571 127 37.0 5e-28 MAVDYQVADAVTLFRSLETEVAIQALNEIIKYDLSNVIPGQINYDILQQIGENNLPFRLS PWLKKNLDRHISRHNTQKKQVAKQTIAPEDIHIIGKNDNYTTTENEVAFRYAVVLDLREI DIYESFNSLGGDSIHAMELLKEINAIYPRTIDITDIFTHSSVEELAGLIDKKRGIGKEQS DDKAVIVPDYKLSDDDIMSMLDNVEKGNVSSFDEAIKVIKSNK >gi|333606338|gb|AFDH01000057.1| GENE 5 21827 - 24580 153 917 aa, chain - ## HITS:1 COG:BS_pksL_1 KEGG:ns NR:ns ## COG: BS_pksL_1 COG3321 # Protein_GI_number: 16078781 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Polyketide synthase modules and related proteins # Organism: Bacillus subtilis # 35 914 320 1167 1814 443 33.0 1e-124 MNTVKRFILDQLSMKHISQTEAVNLLAKLQQNEEEKLTEIAVIGVANRLPMAKNPGEFWG NLVNSRVCFVPKPEDRLVFDKMLLKNIAFAEYIGYNPSPENYDKLEQFQGGYITDWDKFD AAFFGIPPREARYIEPEQRVFMETAVTAIEDAGYSIPSITNSNMGVFVGKDETNSIHYKY LTEDDQMKLSGFWNGILASRISYTFNLKGPALVLDTACSSGLVAIHEACSALRNQECDMA LAGGINLGITGFNMQDSDNKETSDEDMSIMDTVQSKDYRIRTFDKKCSGTVFSEGVVVFL LKPLKKAIKDGDHIYGVIKGSSINNDGASNGITAPNPLAQEEVIINAWKKANVSPESISY VETHGTGTLLGDPIEVTGLSNAFSKFTDKKQFCGIGSVKTNIGHTVGAAGPTNLLKVLLS MKHRMLPPSLHFEETNPYINFINSPLYVVDKCMNWDSGEMPLRAGISAFGFSGTNCHIIV EEYKDSDLLPDTTANNVLTLSAKTETALKSLIHNYEQFLENEQDIPIGNLCYTANTGRGH YTYRIAIVFNTLKDLTDKLAILKKTELKNMVNHSIYYGKNHVVSDKRQSINEGDISTSEL NRITQEAQKIVLTGREGSENSSQLSKLCELYVKGATVDWKQLYQDGSYKRVSLPTYPFDR THYWAEPITMAQSILRKPDSTILHPLVHQCIVDSMKQSVYLVNPELTKEWVVTDHKLMGT HLLVGTAYLEMIKEACQHCFNNANIVIQDLVFMAPLLAYEGDMDIHIVITQNDVNADFSV VSRHEESTGDVWIEHSKGTVCMHDDTPPKQLQFSEIESDPALKKFSIKQGLEEKELILNS WESDNYFGERWESIMNFFTKANGDRDEIITEIQIPDKYLSDLDQFSFHPALVDNAINIPV IRLYTGGRKLLPFSYKT >gi|333606338|gb|AFDH01000057.1| GENE 6 24597 - 26642 234 681 aa, chain - ## HITS:1 COG:all1649 KEGG:ns NR:ns ## COG: all1649 COG3321 # Protein_GI_number: 17229141 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Polyketide synthase modules and related proteins # Organism: Nostoc sp. PCC 7120 # 62 475 968 1353 1570 164 31.0 7e-40 MYSYIKLKEQERVTQEFAAFDITLLDEDFHIIGELNNYVIKKIHDEKNFMKSSQHQYRTT HWIACSDPIDKAVNVVKEDDCILVMYRQGQLNSSLMLQMRQYFGERIIAVELREACDFDT ILSSLAKENIKYIVHMASLIHEEMQTGSQLITEMELLFKSTFNLIKALLNQDVRHSINLV IYTSNATKVTGEEEWIQPLSYGLSGMVNTIGREYANIKTRVIDIDNDTSADVLIEDMLSN ESLHAVSYRKNVKYMQQLNNVTHGTALNDEQMTLVDNGVYIITGGLGGMGLAISQYLFRL NPTIHIVLLNRTYSRDTFSLLSEPIDPILRKKLEQVQSLWSQGYSLDIMQVDIADYIQMD DALQQLRDAHGAVRGIIHAAGIAGDGFIMNKTWQTYESVLRPKIAGTWVLHELTRNDPLS FFVMCSSYVSIFGAAGQSDYVAANAFLDSFSYYRRTLGLPSLTINWTGWRESGMAAVSGI REEGPYVRFLNDEEGAAAFWHALKTKLPQVLIGDIDYKALEMEHDNLIISLFENSSNHRG NDQSHWSKGTSPEDKEIVVIGKSMSDITDIERNVIYAWSQTLGNDEVDIHAKFFESGGNS LLAAYLQKELDKFYPGIIVITDMFVYSTVVEIAQYIETKTTKSNKITIKKESSNNIQDMV DQFVAGDMNMEQVLALLDKDN >gi|333606338|gb|AFDH01000057.1| GENE 7 29288 - 29752 194 154 aa, chain - ## HITS:1 COG:no KEGG:CKR_1606 NR:ns ## KEGG: CKR_1606 # Name: not_defined # Def: hypothetical protein # Organism: C.kluyveri_NBRC # Pathway: Fatty acid biosynthesis [PATH:ckr00061]; Metabolic pathways [PATH:ckr01100] # 3 149 263 419 424 110 33.0 1e-23 MLYAKKYMIQYGVEVGPGHVLKNLMNNIFGDTPIFAYDHTNDIEKLEKHIQNTAIPFLSR SLGIFAATRNNNWDSEQYQRGVIEPYNKLNALQSEIENEGRTATEDEMQQAITMLLMMFK TKQTSREEQIARLKELFRDSNTETIFEHFDYNAI >gi|333606338|gb|AFDH01000057.1| GENE 8 29758 - 30315 -36 185 aa, chain - ## HITS:1 COG:SPy1750 KEGG:ns NR:ns ## COG: SPy1750 COG0331 # Protein_GI_number: 15675599 # Func_class: I Lipid transport and metabolism # Function: (acyl-carrier-protein) S-malonyltransferase # Organism: Streptococcus pyogenes M1 GAS # 1 145 72 215 312 122 44.0 4e-28 MYRVLMDRHMIKPDLMAGHSLGEITALTCAGAIDFADAVRIVRKRGELMQEAIAPEAGCM VSVMMRDVEKLEHICHSVTQSNEVVSISNYNSRTQTVISGHRKAVDKVVNLLNEEGLKSV YLNVSAPFHCSIMQPVATLFEEELKNTGLQILRYLFFLTSQLSLTWAARISFLILQRKFT HLFAG >gi|333606338|gb|AFDH01000057.1| GENE 9 30566 - 32464 288 632 aa, chain - ## HITS:1 COG:BS_pksL_2 KEGG:ns NR:ns ## COG: BS_pksL_2 COG3321 # Protein_GI_number: 16078781 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Polyketide synthase modules and related proteins # Organism: Bacillus subtilis # 41 630 4 610 950 247 27.0 7e-65 MITTKKTNAMDLVISMFKDGRIDKAEAGQLLKGLNSQKTPVAIVGIGWKSPLSDNYNDIW DVISNKRTLIQACPKDRITRAAQLLGGLDTDERNYHYGAILSDIDEFDYELFGISHEDAS LMEPSHRIMLQAAYRALEDAGYLGTDRRNEITGVYIAANFTANQLVNYLKHIDDINMKSY MLNWTSFLATRLSNKFDLRGPSTVIENSCVSGALALYEACNLLEMGKITSALVGGINISH LLDQRIVLNEVFHHAPDIASKSFDDEPGGNYLGEGAIALYLKPLDKAVADQDRIHGIIRG IDTNNSGGASVDFLQTSSEMITQVVQGALNDANLSAEDITYVDGEGYCERIEQALEVKGL INGFQTSTQKKQYCALGLTSVNLGYSEAMLGLSNAVCSVLALKNKQIPPVYKFDTPSSYL DLINSPFYINDKLKDWEVEEGKKRIVASFSSGYGGGNALTIYEEYIPDELNLQPWIKDCY LFCISGHTLVSLQQTISKFTEFVKQYKDTETANALDFSYTVLARRQHYSPYRLAVVYRTF DDLYDTLSQWIAQNRSSHDIYYDEKRRKSVAENRDVEQGMLSSFARYDMHEIAEYYVNGY AIDFNSLFHDEQPRLIDVPGYCFTQSKCWIGG >gi|333606338|gb|AFDH01000057.1| GENE 10 32480 - 32758 175 92 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MDYLQNVVTPYNQLKDIYDKYSSSNQQPSDSDMADASRYFMQIMHGKKTEANEINLRLSD LQEETLIEDVDMFIDLSKTTLLAKGTPVSGMS >gi|333606338|gb|AFDH01000057.1| GENE 11 33661 - 34635 -100 324 aa, chain - ## HITS:1 COG:CAC0243 KEGG:ns NR:ns ## COG: CAC0243 COG0842 # Protein_GI_number: 15893535 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Clostridium acetobutylicum # 12 316 66 362 370 163 31.0 3e-40 MFTQDFIKQLEGQYKIINLTSNDDVKSMVINSELDGGLLFQQGFTKSLLNGENVSVLTYD STGTDIFGPVKVYVSSYVSSAKQIARASGGDEKIFYQGMDHYKNSAFNVTYESALKYAGS ERDVSNAVKSLGFIASGMIFLMTFSTSLILQDKLSGVYDRIAVTPVSRFSYLIQNMLACF VIAAIQSVLLLSIISGIVDFPFGQTSQQKQEVLLVCLAFSLVCVALGIAISRFSNTRLMA GSLSTLIYFPMLMLGGCFWPREIMPKFAQQIGDFFPTTWFLQAGRDVIAGKGIAAASQQL IYLLCFAALLIFISFIVRNEKVRM >gi|333606338|gb|AFDH01000057.1| GENE 12 34785 - 35933 132 382 aa, chain - ## HITS:1 COG:CAC0242 KEGG:ns NR:ns ## COG: CAC0242 COG0842 # Protein_GI_number: 15893534 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Clostridium acetobutylicum # 1 381 1 377 378 154 29.0 2e-37 MNILFQMFYAFKRMIMNPKAILINLLTYAIVILILGSVFGSTYDLQKSLGKVTIAYANLD SGKYGAIFDAALHSNDVTQLAELKPVASVDDGKVLINKDEADAIIYIPDNFSDDEDLPHV VNVYLATDYGVPTLVVKNIVSSLTNLVNTSSVIYNITGQAKVDASGSEPQKKNEENVKEQ SLTSSSSQATTAMGYYSIAMILMLLLYGQEYGIFMASEDYLGTLGNRMRLSTVKPHVQYI GKGLGLSLVTFFQAVILLLFTKYVYGVDWGNHIIVVLLTLFILSILVTLLGLMLVIITRS IQKAQSLSNFISLGGTFIVGGFVIADFGSVAYLSPSYYAKTALFNVVYGNQVEQALMNIG IMILICVGFVLVSLAASRRTVE >gi|333606338|gb|AFDH01000057.1| GENE 13 35954 - 36901 465 315 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 1 313 1 306 311 183 34 1e-45 MEDVRVIIEVSDVVKKYNNLDVLKGVNLSIREGEIFGLLGPNGAGKSTLMNTILGLLRFN SGSVKILGKDFSTHATEIKRKIGYVPQEIAVFETLNAIDNVTYWGRLYGLRGNELTQMVK KALEFTGLWDRRKSKVSTFSGGMKRRLNIACAIVHQPRVLFMDEPTVGVDPQSRNHILES IRIMNKEGTTVIYTTHYMEEVEAICDRVAIMDFGQLIALGTIDELIADHIHEQCLRLEFT ADTAESVKVIESFDGVLSFSVNEEILEIKLDKDDSRIPLILEQLIKQHFNIKYMAVEKPN LETVFLQLTGKKLRD >gi|333606338|gb|AFDH01000057.1| GENE 14 38337 - 38768 97 143 aa, chain - ## HITS:1 COG:BH0118 KEGG:ns NR:ns ## COG: BH0118 COG0250 # Protein_GI_number: 15612681 # Func_class: K Transcription # Function: Transcription antiterminator # Organism: Bacillus halodurans # 2 142 3 147 178 60 26.0 1e-09 MKYWYALFVESNQEEMVLQHLNLNFDSSVLNALVPKRRVPEKKNGKIQHVIKKLFPGYVL INCRLTDEIYYKIKRIPRCYRVVHNGKSFNKEECKIEPQEIEPIIKLLGDRGTLEYSSVY LVKSKVLVTSGPLKGLEGIIKKS >gi|333606338|gb|AFDH01000057.1| GENE 15 39213 - 39335 68 40 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSANGDHILGNLFTLKYVIRRKKSITLTTGLHNGIYERVA >gi|333606338|gb|AFDH01000057.1| GENE 16 39346 - 39543 105 65 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSRIHRFMSETRMKVSIIKPFIHCDRVEDLQSGSYRIKFNSFFEKSKKNGTLSRDIVHAT RNTKN >gi|333606338|gb|AFDH01000057.1| GENE 17 39581 - 40699 532 372 aa, chain + ## HITS:1 COG:BS_yitF KEGG:ns NR:ns ## COG: BS_yitF COG4948 # Protein_GI_number: 16078161 # Func_class: M Cell wall/membrane/envelope biogenesis; R General function prediction only # Function: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily # Organism: Bacillus subtilis # 1 371 1 371 371 469 57.0 1e-132 MLIHKIETFPLFYRLPAAYGDANGIKSYRTNYLFRITTDTGVEGWGECVDWLPTLHKGFQ ERIIPYLIGKPIVDRSKLVLTLKKWHSRAATAVSMALTEILAKSSGLSVCDLWGGKYRDK VPVYASFQSYSVETDWHKHSLEAINQAVTEGFNMIKIKIGGKSIAEDQRHVLSVQHLLQG KISLALDANQSYDVAAALQWKTMLEKSPNLLWMEEPLQIKYIAEYIVLRSRFFVPLAGGE NIKTASDFIPLLSHYALDYITPDPLHIAGIDEYRETLSLARKFGIRATPHAYDGALTRLY ALFAQACLEPWSKMETEMIEPVEWDVMDNPFNHLISVQPSNGEIAIPYGIGIGIEIDLEM LAFYQWDGSSYE >gi|333606338|gb|AFDH01000057.1| GENE 18 40838 - 42022 669 394 aa, chain - ## HITS:1 COG:BH3350 KEGG:ns NR:ns ## COG: BH3350 COG0436 # Protein_GI_number: 15615912 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Bacillus halodurans # 11 392 11 392 393 431 53.0 1e-120 MFSEEGTGQFLSSRVRDIRPSGIRAFFDLNAAGGDTIALGVGEPDFVTPEKVREACIQAL REGKTKYTSNAGSMELREELSAYLADSFTLSYDPEQEILVTVGSSEAVDLALRAVINPGD EVLIPAPSYVAYEPITHLHGGKIVEVAASVQEQFKLTPQALQAAITPHSKALMINYPCNP TGTVMTKQDWMPIVELVIKHNLVVISDEVYAELTYGRKHVSIASFPGMKERTIVIGGFSK AFAMTGWRVGYACGPRELIAGMLKIHQYTAMCAPTIAQIAAIESLRHGLAAKDEMMASYN ERRKLFVAGLNAIGLTCHEPEGAFYAFPSIASTGMSSQQFALRLLEEAKVAVVPGHVFGS GGEGFIRCSYAASLFDLEKVLERMGRFMRAAQPI >gi|333606338|gb|AFDH01000057.1| GENE 19 42015 - 42458 256 147 aa, chain - ## HITS:1 COG:BH1621 KEGG:ns NR:ns ## COG: BH1621 COG1181 # Protein_GI_number: 15614184 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanine-D-alanine ligase and related ATP-grasp enzymes # Organism: Bacillus halodurans # 3 134 166 303 305 85 37.0 2e-17 GFDQEILIEPYIKGTELTCSIVDGEVLPIIGIRSAHSEWFDYKAKYEPGGAEEKVIQLPP ATRQRVREAALASYRLLQCKVYARVDMILCQDVPYVLEVNTLPGMTENSLLPKSAAAADM TFTQLLNRIIASSLLERKQEWGMVQDV Prediction of potential genes in microbial genomes Time: Sun Jul 17 09:08:13 2011 Seq name: gi|333606336|gb|AFDH01000058.1| Paenibacillus sp. HGF7 contig00182, whole genome shotgun sequence Length of sequence - 692 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 690 436 ## Swol_1378 hypothetical protein Predicted protein(s) >gi|333606336|gb|AFDH01000058.1| GENE 1 3 - 690 436 229 aa, chain - ## HITS:1 COG:no KEGG:Swol_1378 NR:ns ## KEGG: Swol_1378 # Name: not_defined # Def: hypothetical protein # Organism: S.wolfei # Pathway: not_defined # 2 145 147 290 1030 112 50.0 1e-23 ANWTSSTSGVTNDLWNITYINGTYFAVGASGTILTSSDGASWTRQTSGTTNILYAVSYYN GTYVAVGAGGTILTSGDGVSWAGQTSSTSNELRGVGYVNGTFVVVGLGGTILTSSDGVSW TGRVSGTSNALYGITYGNDTYVVVGSGGMILQSPTIAALTNAATPGIATQPTGATVNEGD SSPTLSAAASASDGGTLTYQWYSNAANSTNGGTAIVGATSASYAAPTTQ Prediction of potential genes in microbial genomes Time: Sun Jul 17 09:08:34 2011 Seq name: gi|333606287|gb|AFDH01000059.1| Paenibacillus sp. HGF7 contig00104, whole genome shotgun sequence Length of sequence - 54165 bp Number of predicted genes - 46, with homology - 43 Number of transcription units - 23, operones - 9 average op.length - 3.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 371 - 955 669 ## COG1309 Transcriptional regulator - Prom 986 - 1045 3.7 + Prom 1143 - 1202 4.4 2 2 Tu 1 . + CDS 1312 - 4494 3097 ## COG0369 Sulfite reductase, alpha subunit (flavoprotein) + Term 4544 - 4589 12.6 - Term 4611 - 4646 4.5 3 3 Tu 1 . - CDS 4761 - 4922 203 ## - Prom 5164 - 5223 5.4 + Prom 4850 - 4909 1.7 4 4 Op 1 . + CDS 4992 - 5117 56 ## 5 4 Op 2 . + CDS 5123 - 5779 681 ## COG0398 Uncharacterized conserved protein 6 5 Tu 1 . + CDS 5948 - 6565 587 ## BcerKBAB4_1617 cupin domain-containing protein + Term 6572 - 6599 -0.5 + Prom 6662 - 6721 5.5 7 6 Op 1 . + CDS 6755 - 7321 526 ## COG1695 Predicted transcriptional regulators 8 6 Op 2 . + CDS 7327 - 8988 1199 ## COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases 9 6 Op 3 . + CDS 9007 - 9627 308 ## GYMC10_4772 activator of HSP90 ATPase 1 family protein 10 6 Op 4 4/0.000 + CDS 9679 - 10017 350 ## COG0346 Lactoylglutathione lyase and related lyases 11 6 Op 5 1/0.000 + CDS 10042 - 10443 375 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Term 10581 - 10615 1.1 + Prom 10445 - 10504 3.3 12 6 Op 6 17/0.000 + CDS 10707 - 11372 687 ## COG0765 ABC-type amino acid transport system, permease component 13 6 Op 7 34/0.000 + CDS 11353 - 12021 697 ## COG0765 ABC-type amino acid transport system, permease component 14 6 Op 8 16/0.000 + CDS 12051 - 12818 240 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 15 6 Op 9 1/0.000 + CDS 12815 - 13702 1183 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain + Term 13724 - 13763 1.1 + Prom 13771 - 13830 2.7 16 6 Op 10 . + CDS 13874 - 14470 485 ## COG1309 Transcriptional regulator + Prom 14481 - 14540 6.9 17 7 Op 1 21/0.000 + CDS 14769 - 15788 1242 ## COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components 18 7 Op 2 2/0.000 + CDS 15812 - 16669 883 ## COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component 19 7 Op 3 8/0.000 + CDS 16672 - 17532 1047 ## COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component 20 7 Op 4 . + CDS 17567 - 18925 1452 ## COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases + Term 18945 - 18988 -0.9 + Prom 19027 - 19086 6.9 21 8 Tu 1 . + CDS 19191 - 20807 1571 ## ZPR_3166 hypothetical protein + Term 20827 - 20868 8.1 - Term 20820 - 20851 4.8 22 9 Tu 1 . - CDS 20930 - 21328 521 ## - Prom 21489 - 21548 5.8 + Prom 21407 - 21466 3.0 23 10 Op 1 . + CDS 21582 - 22667 775 ## BCZK2891 spore maturation CgeB protein 24 10 Op 2 . + CDS 22720 - 23793 846 ## COG3754 Lipopolysaccharide biosynthesis protein + Term 23814 - 23851 1.0 25 11 Tu 1 . + CDS 24311 - 25360 197 ## PROTEIN SUPPORTED gi|163788937|ref|ZP_02183382.1| 50S ribosomal protein L31 type B + Term 25387 - 25426 8.4 - Term 25439 - 25484 9.1 26 12 Tu 1 . - CDS 25535 - 26605 1165 ## COG3391 Uncharacterized conserved protein + Prom 26981 - 27040 5.3 27 13 Tu 1 . + CDS 27079 - 29607 2709 ## COG2931 RTX toxins and related Ca2+-binding proteins + Term 29801 - 29842 13.4 - Term 29787 - 29830 13.8 28 14 Op 1 . - CDS 29868 - 30581 601 ## COG0789 Predicted transcriptional regulators 29 14 Op 2 . - CDS 30628 - 30885 249 ## Sthe_2965 helix-hairpin-helix motif protein - Prom 31005 - 31064 4.8 + Prom 30900 - 30959 1.6 30 15 Op 1 7/0.000 + CDS 31091 - 32053 929 ## COG4209 ABC-type polysaccharide transport system, permease component 31 15 Op 2 14/0.000 + CDS 32069 - 32935 1059 ## COG0395 ABC-type sugar transport system, permease component 32 15 Op 3 2/0.000 + CDS 32997 - 34556 1785 ## COG1653 ABC-type sugar transport system, periplasmic component + Term 34566 - 34608 9.0 33 15 Op 4 7/0.000 + CDS 34649 - 35659 1014 ## COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain 34 15 Op 5 . + CDS 35660 - 37468 1774 ## COG2972 Predicted signal transduction protein with a C-terminal ATPase domain + Term 37497 - 37530 4.1 + Prom 37502 - 37561 6.0 35 16 Tu 1 . + CDS 37644 - 41363 3698 ## Rmar_1386 hypothetical protein 36 17 Op 1 . + CDS 41475 - 42530 667 ## Htur_1168 hypothetical protein 37 17 Op 2 . + CDS 42532 - 43299 277 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 38 17 Op 3 . + CDS 43296 - 45683 1662 ## GYMC10_3686 heparinase II/III family protein + Term 45715 - 45757 4.9 39 18 Tu 1 . + CDS 45952 - 46986 867 ## Bsph_3277 hypothetical protein + Term 47186 - 47225 4.6 + Prom 47199 - 47258 6.2 40 19 Op 1 . + CDS 47316 - 48215 834 ## COG2162 Arylamine N-acetyltransferase + Prom 48226 - 48285 3.1 41 19 Op 2 . + CDS 48323 - 48808 482 ## COG5500 Predicted integral membrane protein + Term 48824 - 48885 6.4 - Term 48777 - 48804 -0.8 42 20 Tu 1 . - CDS 48926 - 49339 387 ## COG0346 Lactoylglutathione lyase and related lyases + Prom 49229 - 49288 1.9 43 21 Op 1 . + CDS 49425 - 49727 153 ## COG0369 Sulfite reductase, alpha subunit (flavoprotein) 44 21 Op 2 . + CDS 49724 - 50107 418 ## COG0346 Lactoylglutathione lyase and related lyases + Term 50239 - 50276 3.3 + Prom 50357 - 50416 3.6 45 22 Tu 1 . + CDS 50565 - 53078 2157 ## COG0178 Excinuclease ATPase subunit + Term 53086 - 53133 14.0 + Prom 53291 - 53350 3.8 46 23 Tu 1 . + CDS 53397 - 54165 515 ## COG0456 Acetyltransferases Predicted protein(s) >gi|333606287|gb|AFDH01000059.1| GENE 1 371 - 955 669 194 aa, chain - ## HITS:1 COG:BH3394 KEGG:ns NR:ns ## COG: BH3394 COG1309 # Protein_GI_number: 15615956 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus halodurans # 1 173 1 167 186 124 35.0 8e-29 MTDSQMTKKALAASLKKQMETKPLAKISVQDISSGSGLNRQTFYYHFKDKYDLVHWIYYS EAVESIADYRDYEHWSDMAVQILHYLMKNRLFYVNALHTPGQNAFDGYLFEATKDMIKRV VDDASSGLGVSDADKCFIAEFYTFAFVGIVVKWVKTGMKELPETMMKRISDLVDGTLLRA LSRHAGPQPVEAAP >gi|333606287|gb|AFDH01000059.1| GENE 2 1312 - 4494 3097 1060 aa, chain + ## HITS:1 COG:BS_yetO_2 KEGG:ns NR:ns ## COG: BS_yetO_2 COG0369 # Protein_GI_number: 16077792 # Func_class: P Inorganic ion transport and metabolism # Function: Sulfite reductase, alpha subunit (flavoprotein) # Organism: Bacillus subtilis # 456 1060 6 611 611 806 64.0 0 MAKSEPLIPQPKTYGPLGNLPLIDKESPLQSMMKLADELGPIFKLEMPGRTQLLISSHEL VADACDESRFDKKIGAALSNVRAFGGDGLFTAHTDEPNWQKAHHILLPTFSQRAMKGYHN MMVDIAVQLIQKWSRLNADEIIDVPEDMTRLTLDTIGLCGFNYRFNSFYREQPHPFITSM VRALHEAMNQTQRLGLQDKLMVITKRQFNHDIQAMFALVDKLIAERRAQGTEGIDDLLSH MLNGKDPETGESLGDENIRYQIITFLIAGHETTSGLLSFALYFLLKNPDKLRKAYEEVDR VLTDPVPTYGQVRELTYIRMILNEALRLWPTAPAFVLYAKEDTLLADKYPLQKGDSLTVL IPKLHRDKTVWGDDVESFIPERFEDPGKIPYDAYKPFGNGQRACIGQQFAMQEATLVLGM VLKHFNIMPHTDYVLKVKETLTMKPEGFTMKVEPRQQGVAVTIPGTAVSAADDKRVKEQA APLSVNAHNTPLLVLYGSNLGTAEGIARELADAAKYQGFRPEVASMNDYAGKLPKEGAVF LVTASYNGKPPSNAKDFMDWLESAEPSEIAGVRFAVFGCGDHNWASTYQDVPRRADELLA SKGGQRLAGRGEGDASGDFEKQLEDWREALRPDVMKALGLELAEISEKEKSSLSLQFVSG FAGTPLAESYDAVHAVIAGNTELQREESGRSTRRIEVKLPEGVTYRVGDHLGVLPRNSRE SVARVLRRFGLQGSDHLILSGSGRSAAHLPLDRPVSLEDLLGHSVDLQEAATRAQLRELA GCTACPPHKRELEALLEEDAYREQVWKKRVSMLDLLERYEACELGFERFLELLPPLKPRY YSISSAPQVQPEEASITVGVVKGPAWSGRGEYRGVASNYLAERREGDAIVMFVRTPESGF GLPDDPKTPVIMVGPGTGVAPFRGFLQARSALRREGTELGEAHLYFGCRCESDYIYREEL ERYEREGLVKLHTAYSREEGTPKTYVQHLMKENAAELIALLDKGGRLYVCGDGSRMAPDV EEQLMEAYANIHQVSPDEARKWLDGLQTDGRYAKDVWAGI >gi|333606287|gb|AFDH01000059.1| GENE 3 4761 - 4922 203 53 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVHTKTKSYTYKVGKNKFLVFQIFQSAIAKTHAGNALASNAVHVKVFKKGKKR >gi|333606287|gb|AFDH01000059.1| GENE 4 4992 - 5117 56 41 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MAGRISGLRKKERQLRAGMQMLPGFPGSKGGKDEVFKVSLG >gi|333606287|gb|AFDH01000059.1| GENE 5 5123 - 5779 681 218 aa, chain + ## HITS:1 COG:BS_yhjE KEGG:ns NR:ns ## COG: BS_yhjE COG0398 # Protein_GI_number: 16078112 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 17 207 2 191 207 131 35.0 1e-30 MTFQMTPRKEKAEFMDISDIVSYVTNEDNLKHLLEQYRSLGPLPGILLTFMKSFVPPLPT LLIVGVNAAVYGLWAGFLYSWIGIVSGCLVTFLIVRKIAGHSYLERLARKPKIARTTKWI RRNAYSYVFLLSLFPVGPFVVINIAAGLAGMRLRSFLMAVLIGKGIMVFTVSYIGYDVAK YIENPYQLLYVVLFVAVSLIVSKKIEKRFSSGQTMELE >gi|333606287|gb|AFDH01000059.1| GENE 6 5948 - 6565 587 205 aa, chain + ## HITS:1 COG:no KEGG:BcerKBAB4_1617 NR:ns ## KEGG: BcerKBAB4_1617 # Name: not_defined # Def: cupin domain-containing protein # Organism: B.weihenstephanensis # Pathway: not_defined # 1 180 1 180 211 236 62.0 6e-61 MSGYGYRAGPTNHHKSSGMPNLAFNARDNVLFKRNEDNVAYEVTSTQLPPMTGGAFTELR LGRGYIREPHWHPNAWELHVIVAGEAEISVMCPDSPQLVNYRAKEGQVVFVPAGWWHWIT PVSEKVHLHAFFNHEQPETVHGSDILRLTPPEVLQNAYNVNAALAGKTFAPITESVRIGP AVPAHSEPGKPATPGQPYLNEKKKT >gi|333606287|gb|AFDH01000059.1| GENE 7 6755 - 7321 526 188 aa, chain + ## HITS:1 COG:all4972 KEGG:ns NR:ns ## COG: all4972 COG1695 # Protein_GI_number: 17232464 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Nostoc sp. PCC 7120 # 1 103 1 103 179 73 37.0 2e-13 MNIEQVILGFIYGEAMTGYELKKRFDESVAHFFGATFSGIYPALRRMEREALIEKEVVVQ EGKPSKNIVRITEKGRQSFADYLKSPLSPGVQKSDLLVRYFFGRYAAADQIQGWLLEERA RLAHTREGLLHMRQGALNDPDSDAFRLKTLEMGIAQLEFSLRWIDEELTKQSDGGSGAQE KPGREEKA >gi|333606287|gb|AFDH01000059.1| GENE 8 7327 - 8988 1199 553 aa, chain + ## HITS:1 COG:SPCC550.07 KEGG:ns NR:ns ## COG: SPCC550.07 COG0154 # Protein_GI_number: 19075599 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases # Organism: Schizosaccharomyces pombe # 35 528 60 529 533 151 29.0 3e-36 MNIPAKSPDALASSAIGSGEAESHASCAKLPELGAAEMARGIKAGRWTSSELVEAHIARI GQIQPLIGAVAVPLFEEARRAAAEADLRTASGEPLGPLHGVPVSVKESLDAAGTASTWGL TGRTAPASEDDPAVAALRRAGAVVLAKTNAMQLLMGCETVNPVYGRTSSPWNPAGRSCGG SSGGEAALIAAGGSPLGLGTDVGGSIRTPAHFCGVHGLKPTPGRVASRPPRGIAHICREA AEMASTGPLARKVEDLALAMEVLAATETLQAHPLQRPGETDPAGLRIGFYTSDGILPPSP AVERAVLDAAEALRARGVTVKPFRLPEPDLALHQFYALMSAAGAEGIAETAGADALVPQV EGTRRSFGRSRTANRILALLLRGAGQKIAGTHILPYLGRKTREDLGKAAELRQAYREKFA AEMERQQVDVLLSPPFLTPAIPHDHSLAMTYEGSYALLYNYLGMPAGVISLSQVRVDEAD AMRAVRSRDRLVQAAAQADLNSAGLPVGVQVAAAPWREDRVLAVMDMLEKLFRDRPDYPP GKLAAALLPITDK >gi|333606287|gb|AFDH01000059.1| GENE 9 9007 - 9627 308 206 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_4772 NR:ns ## KEGG: GYMC10_4772 # Name: not_defined # Def: activator of HSP90 ATPase 1 family protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 196 1 196 206 232 59.0 9e-60 MPGALFKENVRKETGNTWEEWVIKLQRSVNELWSHEEIRDHICSCYGVSGEWGEWLAAMY APFLGRTPVGVTKDAGVQIGVRKTVAISAPQAWSYLTSSEGLPLWIGSVSEFPLEKGAEF ASTEGITGKLTVVDPFRKLRMTWKRKEWPNPSRLQITLAAAKSGGTTISIHQEMLDDVYM REMMRREWESVLSRIQELGAEEHKRV >gi|333606287|gb|AFDH01000059.1| GENE 10 9679 - 10017 350 112 aa, chain + ## HITS:1 COG:DR2104 KEGG:ns NR:ns ## COG: DR2104 COG0346 # Protein_GI_number: 15807098 # Func_class: E Amino acid transport and metabolism # Function: Lactoylglutathione lyase and related lyases # Organism: Deinococcus radiodurans # 1 110 1 113 122 89 43.0 2e-18 MKLNHLNLTVTDVPATQAFLETYFGLTTRSTRGSAFAVLSDDNGAVLTLMKGAEVSYPKT FHIGFIQESEEKVNEINRRLKEDGFDVEPPQRMHGWTFYVKAPGGFVVEVLS >gi|333606287|gb|AFDH01000059.1| GENE 11 10042 - 10443 375 133 aa, chain + ## HITS:1 COG:CAP0110 KEGG:ns NR:ns ## COG: CAP0110 COG0454 # Protein_GI_number: 15004813 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Clostridium acetobutylicum # 1 119 1 120 137 102 40.0 3e-22 MDIRYSHSNEVNIDELRELFLSVDWESGKHPEELHQAILNSHSVVTAWHGDKLIGLVNAL SDGVMTAYFHYMLVRPDYQNHGIGKALMTEILGKYREYKTKVLISYAEAESFYRSLGFRG EQGAVPLYISELV >gi|333606287|gb|AFDH01000059.1| GENE 12 10707 - 11372 687 221 aa, chain + ## HITS:1 COG:SP0711 KEGG:ns NR:ns ## COG: SP0711 COG0765 # Protein_GI_number: 15900609 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 23 220 1 198 206 169 47.0 4e-42 MHLDTDFMWKHLPDFVRAGGETLRIGGIAIFFSLFVAVIHSFILYFRIRPLTWAVRLHVE LARNTPLLIQLFFLYFALPQLGIKLSAMTTVFIAMTFLGGGYFTEVFRSGIEAVEKSQSE SGLAIGLSKWQLFRYVILPQALRISIPSLFANFIFLLKETTVVSAIAVPELLYTTTNYIS LYYKTYEMLLMMTLCYLVIFLPLSFLLGYLERRFRHGAFGL >gi|333606287|gb|AFDH01000059.1| GENE 13 11353 - 12021 697 222 aa, chain + ## HITS:1 COG:SP0710 KEGG:ns NR:ns ## COG: SP0710 COG0765 # Protein_GI_number: 15900608 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 12 220 14 223 225 162 44.0 5e-40 MALSAYELLVGSLPQLAEGLWATLRISLLTIVFSVAGGIGFGLLRTSRLLLARLLSGTIL ELVRSVPILVWLFFFFFGLPILFDIHLPAFASALLVLSLWGMTEIGEIVRGALQSLPKGQ TEAGKSLGLSGWQLLGYVLIPQAVRRMVPPAINVFTRIVMTSSLTVLVGVTELIKSGQQI IERHYTFSYASVVIYGLMALLYFALCYPLSVFSRRLERRWAD >gi|333606287|gb|AFDH01000059.1| GENE 14 12051 - 12818 240 255 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 20 237 27 256 563 97 32 2e-19 MGEALLQLRQVEKSFDGHRVLKRIDLDVALGEVVVILGPSGCGKSTLLRCLNGLEPIQGG TLLFKGEDLNAGKVPWRVTRQKIGMVFQSYHLFPHMTVLDNILLGPLKVQKRSRREAAAD AEKLLARVGLLDKKNAYPRQLSGGQQQRIAIVRALCMRPEVMLFDEVTAALDPEMVKEVL EVMLDLAREGMTMLIVTHEMRFARAVADRIVFMDEGEIREIAPPDTFFSSPQSGRAKHFL NQFFEMETGKGREEA >gi|333606287|gb|AFDH01000059.1| GENE 15 12815 - 13702 1183 295 aa, chain + ## HITS:1 COG:Cj0982c KEGG:ns NR:ns ## COG: Cj0982c COG0834 # Protein_GI_number: 15792309 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Campylobacter jejuni # 3 295 2 279 279 246 45.0 4e-65 MRKRIAVWVTVVLLAGVLAACGAAKDSKDASGSGAKPASAGESGGGSIQKIKDRGKLIVG VFTDKPPFGFTDDKGNKIGFDSDLAKRFAKDLLGDESKIEFVTVEPASRIPFLQSDKVDL IVANMTVTEERKEAVDFTNPTMKVATQVLVSEKSGLKTLADLKGKKIIVTKGTTADLFLT KNRPDVELVKYEKNTESLQALKDGRGDGYAQDNFVLFAWSRQNPGFALIPEKLEKEAPIA PAVKKGNTELRDWVNKELETLGQEKFLLQLYDKYVKEELGSATDPNDVITEGGKL >gi|333606287|gb|AFDH01000059.1| GENE 16 13874 - 14470 485 198 aa, chain + ## HITS:1 COG:RSc0698 KEGG:ns NR:ns ## COG: RSc0698 COG1309 # Protein_GI_number: 17545417 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Ralstonia solanacearum # 5 158 26 180 264 65 28.0 5e-11 MSPRNTERDLRVREERIQLILDSAITVIASKGFGAASISDIAKAAGISIGTMYHYFSSKD EIFADVLKRGQLDYGKRAAELADEQTMPPLVKLHEFAAGWLANPINWAYTIMLQSARTTE TVPVAIRQAVTDRFTANLQPIARIMEDGQGRGDIRAGDPLQLAFYYVSLIQGLTLQRAPG FEIPVSIEVDALIRFFEA >gi|333606287|gb|AFDH01000059.1| GENE 17 14769 - 15788 1242 339 aa, chain + ## HITS:1 COG:BS_ssuA KEGG:ns NR:ns ## COG: BS_ssuA COG0715 # Protein_GI_number: 16077949 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components # Organism: Bacillus subtilis # 8 338 6 329 332 250 39.0 2e-66 MKTWTTALLLLATVLIAAGCAKKDEASPSANGGKPDYKGLTLKLGVQGSGGMYAKAREEK WFEKAYEPLGVKVEWAEFQSGPPMTEAMASDKLDFASLGNLPVIAAQAAGIKFQIISQIL DGKRNTAIIVPADSPLKDIRDLKGKKVAVTKGSNAYNLLTRGLHDAGVNPADVQVIQLQP NEAQPAFDSGKVDAWAAWDPYITVNTLTGKGKVLAEGETLGVLAPSFVIVRKEIADKYPE LATVYLSVLEKARLWEEQNSAEVLKRYAADYKIPEAVVGGMLTRSKSINIPVSEATAAEL QKTADFQESAGTIRKKIKVADAVNNTFIEEALKAASAAK >gi|333606287|gb|AFDH01000059.1| GENE 18 15812 - 16669 883 285 aa, chain + ## HITS:1 COG:BS_ssuC KEGG:ns NR:ns ## COG: BS_ssuC COG0600 # Protein_GI_number: 16077950 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type nitrate/sulfonate/bicarbonate transport system, permease component # Organism: Bacillus subtilis # 19 282 4 276 276 259 57.0 3e-69 MLSASTRNKLMAGKRFGSAPAAGKSRKKSLLAVNRLTGLLLPLGLLAGWQIAGSAGWLNP ILLPAPSDILGEFGAMLLSGELLRNLGVSTWRVLCGFLLGGGLGLAAGLWVGFSHKAERL LNPTLQMLRTLPHLAIAPLFILWFGFGEESKLLLIAKGSFFPLYIQTFLGIRSVDNKMFD VARVLEFSRFQMIAKLILPASLPNILLGTRLSLGVAWLGLVVAEMMGSSTGIGFMINDAR SMSLTTVMFVGIIMFAVMGKLSDSLVLLAERRLLRWRDSFRGEGG >gi|333606287|gb|AFDH01000059.1| GENE 19 16672 - 17532 1047 286 aa, chain + ## HITS:1 COG:BS_ssuC KEGG:ns NR:ns ## COG: BS_ssuC COG0600 # Protein_GI_number: 16077950 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type nitrate/sulfonate/bicarbonate transport system, permease component # Organism: Bacillus subtilis # 40 286 30 276 276 255 58.0 7e-68 MAKSVSAKGAAKTFSGKTAPNAYGRTAKDLGWLGVFPSRMHGLLVPFVLLAVWQAAGMSG LVGKEQLPTPSAIARRFAELGLSGELLRHIGVSFIRAASGFLLGALTGLLTGLFTGIGKM IERTLDPSLQMLRTVPLLALIPLFILWFGIGEFSKILMISLAAFFPVYLNTFTGIRGVDS KLYEVTRILRYSRSQQLRKLIIPSALPHILLGLRLAMGVSWLILVFAELMGTSAGIGYMI EDARTYSNTDIVFVGIILFACVGSLSDLAVHALEKRWLGWRDTFKG >gi|333606287|gb|AFDH01000059.1| GENE 20 17567 - 18925 1452 452 aa, chain + ## HITS:1 COG:BS_yxeK KEGG:ns NR:ns ## COG: BS_yxeK COG2141 # Protein_GI_number: 16081003 # Func_class: C Energy production and conversion # Function: Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases # Organism: Bacillus subtilis # 1 434 1 434 441 445 50.0 1e-124 MSKRMDQLHLGAFIYYAGHHHAGWRHPESGVEGIYDFDLYRSIAETAERGKFDMIFFADL LYVQHVDRAASGMLDPITLLSALAAVTKRIGLTATVSTTYNHPYNVARKFASLDYISKGR AGWNIVTSQLDIEAHNYGLPKHPDHALRYEMAEEFVEAVTRLWDSWDDDALVLDREAGIY ADPGKVKAVDYRGKWFSSKGPLNVPRPPQGNPVLIQAGSSPQGQEFASRYGEVIFTAQQS LEAAKAFYAAVNGRLSGAGRKPGSLKIMPGISPILGATVEEARRKERELTDLIPTELAVM ALSGMVSHDLSAYPPDGPLPDIPDPVEKSNGMKSRVQLIMDTARSEGLSIRELGQRILGA RGHLQFVGTPEQLADLMEQWFREKACDGFNVMGPVLPGDLETFTDEVVPILQRRGLFRTE YNGTTLRDHLGLERAEAGHFSKRGSAEVGVNG >gi|333606287|gb|AFDH01000059.1| GENE 21 19191 - 20807 1571 538 aa, chain + ## HITS:1 COG:no KEGG:ZPR_3166 NR:ns ## KEGG: ZPR_3166 # Name: not_defined # Def: hypothetical protein # Organism: Z.profunda # Pathway: not_defined # 38 307 296 585 592 150 34.0 1e-34 MKKLTYLTAAAFLGLSLIGGFGISTAEAAQTTSTTTPKNVAAGGSVTASGEYAPTQTKES AFDQSLYSKWLTFSSTGWIQVKLDTAKTVTSYSITAAEDFPERDPKSWVLKGSNDGSTWT VLDTRQNEAFTYRNQTKSYSFANTSSFKYFKFDSITNQSGGILQISEIKLFDGSVDTWTT IKPTVTASAENTPNEGKDNLVDGTSVTKWLTFNATGWLKFDFGKPVTIDGYALTAANDFA ERDPKSWVLQGSNDNANWTSLDTKSNESFRLRHQRNHYVLNGNNTAYQYYRLNNLQNHSG GILQLSEVEFSRKDDMWHAVNPVIEVQNLDAAGNGQLFDQALPNATDDIRVIVRKVNELL YNNPGELLGGVQKIKVTIEDVPGVAWASGDHIQKTVGFSSRFLRDIANDPNKSVRDEILG VLYHELTHCYQYDDNRYADKSVGGVSYMVEGLADTIRFAVGYHDRYSMTKGGTWQDGYGT TGNFFRWIEDTKKPGFIRQLNASLTPFDGQDWTEGKIQELTGTNVNTLWTEYQATLPN >gi|333606287|gb|AFDH01000059.1| GENE 22 20930 - 21328 521 132 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MPTFDNVQVTGSQTIGQDLQVNGNETVGSHLNVNGNQTIAGSLQVNGSETVLNHLAAGGT ITAGGSIRAVAQVGALNQPTLPVSIPSVQQVRYYNPGVLNQPGLLLTGTDGLAYVLFVDV SSGTPSLAIQKA >gi|333606287|gb|AFDH01000059.1| GENE 23 21582 - 22667 775 361 aa, chain + ## HITS:1 COG:no KEGG:BCZK2891 NR:ns ## KEGG: BCZK2891 # Name: not_defined # Def: spore maturation CgeB protein # Organism: B.cereus_ZK # Pathway: not_defined # 119 359 56 324 331 106 28.0 2e-21 MKKTIKKKSPSKQAQNKWILNDVKKPLNKKPQPLKHTMSVNRPGTRNELPLPRDVQSREI TKKRPYKRMNLLLVAPDHPMPGAPNEILLEEQLRHLARNVTTIKYTQPMAEQLNRPDLDL ILIIGGEEPFSDESTYALKNTPVRKVLWLSDKEKPFDLDSRTVSLFDYILTQKMAHIPVY RALQCRNCVCLPYASDTGMYFPRPVEDRYKSDLLLIGDAEPKSILYSFAFSDLPADEKVR ACGRGWETFPSLIIIPPDEDLAPYYNGARIVINCSGSLMQTLEVAACGAFQLIQQHSELT PFLEAGDWVTFQTQDEFADKFLYYRENVDHRRLAASRALADNKYNHSFLQKGIQLLDLVF D >gi|333606287|gb|AFDH01000059.1| GENE 24 22720 - 23793 846 357 aa, chain + ## HITS:1 COG:CC0633 KEGG:ns NR:ns ## COG: CC0633 COG3754 # Protein_GI_number: 16124886 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lipopolysaccharide biosynthesis protein # Organism: Caulobacter vibrioides # 2 346 221 564 818 261 43.0 1e-69 MKLIAFLLPQFHRIEENDRWWGKGFTEWTNVKKSVALYRHHSQPRAPLNDYYYDLTDPRA RQWQARTARDYGIYGFCYYHYWFKGKRLLEKPVQHILASGDPDFPFCLSWANEPWTRRWD GMESDVLMPQDYGNEADWSLHFYALLDAFRDKRYIRVDGKPVLLIYRPASIPKCEAMLNH WRNLARLNGLEGLHLVRTLGGFPVGTQHGFDASVEFEPHYTFAHGSIHLPWLQIPVMGKG HLAVDYDRTWTNILGRTPHRNGEVIYPGAFVNWDNTPRKGADGQSTLGMTPRKFGWYLSR QIARARETFGSEFLFINAWNEWAEGAYLEPDTKYGYQVLEAVKAALELNSAASYGNL >gi|333606287|gb|AFDH01000059.1| GENE 25 24311 - 25360 197 349 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163788937|ref|ZP_02183382.1| 50S ribosomal protein L31 type B [Flavobacteriales bacterium ALC-1] # 201 333 247 377 582 80 34 2e-14 MTIRLPYQGMIKMLAAGAIMLMLSIAMLLLLENKASAHGYVSNPSSRAALCASGVNKNCG LIIYEPYSLEALKGFPAAGPADGKIASANGQFAPLDEQSSTRWTKVNLSPGPTTFNWTLK VPHATSAWKYYITKQDWNPNAPLSRASFDLTPFCNVPYKGQPSGSYSDTCNVPSRTGYQV ILAVWEIADTANAFYNVIDVNFGGSPGTPDTSAPTAPTGLTASNVAATSATVSWTASSDN VGVAGYRIYNGSTQIGTTSGALSFNLTGLTANTAYAITVKAVDAAGNVSAASNTASFTTI VGTTYPAWNASTAYTGGSKVTYNGVNYEAKWWTQGETPGSNSGVWKVIP >gi|333606287|gb|AFDH01000059.1| GENE 26 25535 - 26605 1165 356 aa, chain - ## HITS:1 COG:MA3122 KEGG:ns NR:ns ## COG: MA3122 COG3391 # Protein_GI_number: 20091940 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Methanosarcina acetivorans str.C2A # 47 326 75 344 445 123 33.0 6e-28 MLKATLIRRKSLPKVIATIPVNSPLHVAINRKTNRVFVTRSLDALAVINGFTNRVIKTIP IENAPNHLVVNARKNRVHTLNTAVTANPHGLTGSVSLVNGATNRLVSSVNVGKDGAAIVL NAATNRVFVVNAGSDSVTVINGRTNRVITTVKVGDTPFNAAVNPFTNRIFVSNNSAGTVS VINGANNKVIATVKVGTGPDTIAINPLTDRIFVANTNSSSVSVINGKTNKVIKTIRVGAF PSDIKVNLKTNRIYTANSSGNTVSVISGKKLSVIDTIGVGSQPSVLGIDTKKNRIFVANA SPNLSRGTVSVISGFKNKVIATLTVGAQPSDLSVNSKTHRVYVTNSNGDSVSVIRS >gi|333606287|gb|AFDH01000059.1| GENE 27 27079 - 29607 2709 842 aa, chain + ## HITS:1 COG:AGl909_2 KEGG:ns NR:ns ## COG: AGl909_2 COG2931 # Protein_GI_number: 15890570 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: RTX toxins and related Ca2+-binding proteins # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 550 643 295 388 691 68 46.0 5e-11 MSSKKKWLSLALGVTLMATMLPQAYGAQAQPEVRNLAKGLKYEWSEAPHSNYPDPSGKLT DGVIGSANVTDPSWVGSLNKQTREIVFDLGEAKSISKIRAHFLQDWPGSAVLFPLTVSMY VSDDKQNWGTVAHKATEHLWTDGPPVDQFYTWDGSKDGIPNAGSDAKMAYARYVKVAFSM HPKAWEFIDEIEIWGADGKIEGAKQVPAEAFDYMQPGENTAGIRNLSLLYNGYYSDGVKM TKEKLVPEIGYVNKEGKPVDWFFDGALVLGLQSPQGRDFGEGGALLTDWKWYLDKTFADQ GDLEQLNEATKEVGQKLGQPGHKTKTVMMIPNPGEYTTDFGDIDGDGVTENFNEGAVGKD KAIANRQKVIRWWIDEVSRKFEEKHYSNLELSGYYWLQEQVGTSSSGPDLLRFTNGLVHE KGLKSFWIPHFLAYKSYMWKDVGFDAVTFQPNYYFEPLNIDRLQDAAETAKRFGMGVELE FDDRMLTDAVFRKRFLEYLDAGEQFGFKGSPFKAYYKGSGPVMAQAAASSDPEIRGLYDK LYEFTKGGTPAGGAPVASDSALSTPPDTPVSGTLPATDDDGDPLTYSIVRNGVKGNAAVT DASKGTFTYTPGKGQTGTDTFTFKASDGKTDSNVATVTVTIAAGQTGWQTVLTGSGTVPA GEKFSVTYGLTGGSQAVYAQDIKVEYDAAFMDFVSAKPVLDGISLLETDKKTPGQLRLLV ASQGDSHAVTGPAKLLELTFRSKKDNQTIKGVVSVTSAVMGDRDGQEAAAAPSSLTVQTA GSVPGDYNGDGKVSVGDLAIVAAPYGKTKQSTDWEQVKHLDINKDGKINNQDLSAVASKI LK >gi|333606287|gb|AFDH01000059.1| GENE 28 29868 - 30581 601 237 aa, chain - ## HITS:1 COG:BH3675 KEGG:ns NR:ns ## COG: BH3675 COG0789 # Protein_GI_number: 15616237 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus halodurans # 122 235 1 114 131 176 74.0 3e-44 MEYYKPIDIARQLNISTSALRHYESWGVVPAPDRATNGYRLYTRMHLAYFRCLRAMFPAF GVGLSCDVLRHIQRGDMDSAFWLVSHEQSVLQHEKAVADKTLALLQDPELPILANKKLKS AMTIGEAASLTGVQDSAIRHWEKEGLLKPGRDPDNGYRIFTPMHIRQILLIRTLRRTVYF LERMKDIVQAVEHQSIEKAKKVTEQALHSIHERNRQQFRAVSELVELCKEVGLMERD >gi|333606287|gb|AFDH01000059.1| GENE 29 30628 - 30885 249 85 aa, chain - ## HITS:1 COG:no KEGG:Sthe_2965 NR:ns ## KEGG: Sthe_2965 # Name: not_defined # Def: helix-hairpin-helix motif protein # Organism: S.thermophilus # Pathway: not_defined # 20 79 9 68 72 72 66.0 8e-12 MPTNLPDEPNKKAASGPESDFPAGLSKPALRALAGAGFLRLEQLTRVTEKELLQLHGMGP KGIELLRPALAAKGLCFAAAAGTSS >gi|333606287|gb|AFDH01000059.1| GENE 30 31091 - 32053 929 320 aa, chain + ## HITS:1 COG:BH1065 KEGG:ns NR:ns ## COG: BH1065 COG4209 # Protein_GI_number: 15613628 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type polysaccharide transport system, permease component # Organism: Bacillus halodurans # 27 313 24 310 317 273 46.0 5e-73 MSYSGAGLGAESKRHRTRKKAGFFAYYSRFKVLYLLSLPGIAYFLIFKYIPLTGSVMAFQ DYNIFAGIWQSDWIGLDNFRRMIEYADFWHILGNTLSIGFYTLLFGFPIPIILALMMNEL RNAAYKRFVQTSVYLPHFLSWVVVGGIVIELLSPTSGAINYILGLFGREPVYFMGEDSYI RSIIVSSGIWRDAGWSTIIYLAAMSGINPDLYEAAQMDGASRWKQTFSITIPSIMPTITI LFLLQIGNFLDLGFERVFVFLNPLTNGSGDILDTYIYRVGLIQREYSYTTAIGLFKSLIG FVLIVSANKFSKKTTGEGLY >gi|333606287|gb|AFDH01000059.1| GENE 31 32069 - 32935 1059 288 aa, chain + ## HITS:1 COG:BS_lplC KEGG:ns NR:ns ## COG: BS_lplC COG0395 # Protein_GI_number: 16077779 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Bacillus subtilis # 26 287 32 294 295 236 48.0 4e-62 MSPLEKQSKTALLNPVILLLISLAMILPILNIVAKSFSGAGALSSGSVLLWPSDWTLSNY TTVLQQSAIWRAFGISALVTVAGTLIALVMTASLAYPLSRSEYRERKGILVLVLITMIFH APLIPNYLLIRSLGMLDSLWALMLPGAISAFNLFVMRSFFQSIPNELIESARIDGAGELR ILWTMILPLSKPAMATMSIIYSVALWNNYSNALYYINERALFPLQVKLREYVVTDSSDLA NTAGDIANLSPEGLKMAVIVIATIPIMLVYPFLQKHFIKGMLIGSIKS >gi|333606287|gb|AFDH01000059.1| GENE 32 32997 - 34556 1785 519 aa, chain + ## HITS:1 COG:BS_lplA KEGG:ns NR:ns ## COG: BS_lplA COG1653 # Protein_GI_number: 16077777 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Bacillus subtilis # 62 511 57 502 502 103 23.0 8e-22 MKRWKKSALFLTLTASLALTACSGQGASPKEPPGPVKVSLSLSDSLNKYALASTDINNDK WVKKLGEMTGVQLDIKLVPHAEFKPKTALMFASNDLPDVMNTIQGMFPEGPDMLGAIKGG LFMPLDDLLKEYGQDLLKAIPKEAWEEVKYKGKIYAIPEYLSVPTRRATFIRKDLLDATG LPAPKTIDEFLNVLRAMKKNGVEQPFAFRQNFVYSDFIFGAYDVMPYSTMFEKIGDEVVP KFFKVEQMQKALQVYKTMYDEGLMTKDFASVDGNKWTNNINAGKSGIWNHNANLLMTWIN TTKVTNPKSEVVIIPSPVGDDGKGGMMKYSYTGGLSYINSKVSKEKAAAIVKMLNFMVTE QGDKFFNFGIEGDTYQTQDGKVVYKQPKTPEETYEEQFRSVILRLVEDTALNRTLLSQTE DGKKLIQQFDTIVAKEGRDGISFAPELTSSAKFTDAGLKFSDMPPVILDHMLKMVYGKEP ISDWPKVLEEWKAKGGNDIIKEATERYNKKEGVKLGDSN >gi|333606287|gb|AFDH01000059.1| GENE 33 34649 - 35659 1014 336 aa, chain + ## HITS:1 COG:BH3679 KEGG:ns NR:ns ## COG: BH3679 COG4753 # Protein_GI_number: 15616241 # Func_class: T Signal transduction mechanisms # Function: Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain # Organism: Bacillus halodurans # 2 331 4 254 257 134 30.0 2e-31 MKRILVVDDEPLIRQGLVAMLGRLPYDFEWVRTAGNGQEALERMKESLPQLLLTDIRMPK MDGLELCRQVHDQYPLVQKVIISGYGDFEYAQNCISYGVKEYILKPFTPAKIGDLLGRLI SRGNPALSISKYEDLIGNLADSVWSMRIEEMEAYFEQLKTYCLTASRTDYDFVQLLKDCL PMLKKRLALKGFHPIVGEIPDSGDHLHYFEQLHVSILKIIDELALQRGGQDLMLKAKDYM DAHITKELSLEDTADYLGITPQYLSFLFKKVHKETFVQYRILKRIELAKKLLEIPRYRTN DIAYEVGYENYPHFSRMFKKVTGVSPLEYRQQLGIK >gi|333606287|gb|AFDH01000059.1| GENE 34 35660 - 37468 1774 602 aa, chain + ## HITS:1 COG:BH3447 KEGG:ns NR:ns ## COG: BH3447 COG2972 # Protein_GI_number: 15616009 # Func_class: T Signal transduction mechanisms # Function: Predicted signal transduction protein with a C-terminal ATPase domain # Organism: Bacillus halodurans # 168 598 175 591 602 159 26.0 1e-38 MKKTLSRTIFIYIAVVVIITAASIGWFSYHISSSQLRQQNEQHLIEAVSNAVNHTDLYLK LYERAHLSLFTHPDIRKFLDSPPKDDYAYFQYTDTLKKQVIDPLFLKTPEIMTVYLTDYS KNWVYFVNPALKIIQDPVPGATLEELDKETDSNGNLTIINNSVFTESDTQLITLSRKIHG QVFNEFKGILTIQIKSDEFSTLWKGVNLGPGGFFSIVDHEGRIVHHPDKTRIGQVIDSEL LAKLENMQLTSFTDASFGEERMIVSRKSSYSGWNLMVSIPTEDINRPIASIRYLSFLVGG ITLLIALLISYRFGRVITKPIHILKRGMRQTEQGNWMKIPQLRTRNEFSELIDRYNLMVA SLSELMDTLYKTELDKKDAELERQKAELQSLQLQINPHFLYNTLENIICYAVIRQSEEIT EIVDAIAAMFRYSVQTHIEETAIVNELKHVLNYMTIMKHRVGRDFELDVRITPEFFLKKT ARLTLQPLIENVFQHAFADGIEDYHYIRLDAWTDKEDRDLVIAIEDNGVGIPPEKLASLQ RQLESNQLADSTLAGRKGHGGIGLMNVHRRIQLVFGEKYGLSISSAQGQGTSISIRFPNI GS >gi|333606287|gb|AFDH01000059.1| GENE 35 37644 - 41363 3698 1239 aa, chain + ## HITS:1 COG:no KEGG:Rmar_1386 NR:ns ## KEGG: Rmar_1386 # Name: not_defined # Def: hypothetical protein # Organism: R.marinus # Pathway: not_defined # 383 906 388 869 966 287 35.0 2e-75 MIKSMPGFRTRVRVFLSLQLVLSLCLSLAFVTTVSATETGGPAELTDPAPAAGLTGPWLE PFESYGSSQTGYTSPVGASPTAAQPWKAVLGGSAGWSVGEEPATGSAEANHFLQQTDPTS GTAYLIANGYWGTDNPVLTDGSLTLSGRVKVTGANSTYAGLAAKYSVSGTKPTYYRFMTK KNSVSYQFYLERVTGTSKTAVPQSPGSPNASGVSVPNTVLNPSFDSQGYLPLKLDVIHQG DGSLKLDGYYGGTLVLSGTDASPLTAGGVGLYSQSGTTAFDDIQAAAYTGGGPGQPGVPS APAGVSASPWGAGAVKLAWTAVPSASGYNVSMSANAGGPFTPLNASPVTATEYTAAGLTP GQTYYFTVSAVNASGESGASAPVSAVPQASAKPPVTTTAELLTRLNAAVPGEVIELADGS YTGFTVRSKNGTAQNPIVVKAQHKGKAVFPSTGITVETSSYITIQDMEFRMNPQDKWINL NGSNNIRITNNAFRSQSTTTAADKSNWIYIKGTNSHHNRIDHNLMENKRDRGKFILFDGV SSRPEGSTIPYEITQYDTVEYNVFRNTLERQSNESEPIRIGVSVLSSLDAHATIQYNLFD HCDSDTEIVSVKSGANTIRYNYFVESLGSVTLRTGSGSSVYGNMFIGKGRQVLSPDPDDA PLGTGGVRVYGENHNVYNNYFEGLTGTNWDATLAFTTGDNDNMTSPIDPTNNHYIAKNIV IANNTLVNNKSGFELGMVRYGTAPKNLTFANNIVVGSRDELIRIMTPIPGLTWSGNLMFP QKGVPLVTGNSAPLTEDEVKVVYPSMQNATLELGPQDYPWLWASSEYEPLRHISYKKLAA DSPAINASKGNYASGGPLSFVTEDMEREARSGIPDVGADEYVADGRTDAAAPAWPSPNPL ATDGVTPRTVKLKWAAASDDTGITGYRIYRSGALIDTVFGDVLSYEAGSLQPGAAYTFKI EALDRAGHTTASNTVSVTTPAFTGISLTGVPAQLALGGVPKQLVVVAHYSDGSTEPVPSG AVFTSSHPGVLAVSTEGRLTPASLGTSSVSAAYGGKTAPSVVYTVRPSSTNPFAIGGDTY VDNILSDKAGTNFSTETEMQIKRKSASRRNGYVKVTLPALAQPVDSVELKLFVTSAQSGS DLQLTGILNDDWNPAAVTANDQPARTYSDIPLGSKSPLADGSYVVFDVTEFYKNPQAAQD GVLSFRLGMNENDREARIASLEGTDPAKAPVLLITTINP >gi|333606287|gb|AFDH01000059.1| GENE 36 41475 - 42530 667 351 aa, chain + ## HITS:1 COG:no KEGG:Htur_1168 NR:ns ## KEGG: Htur_1168 # Name: not_defined # Def: hypothetical protein # Organism: H.turkmenica # Pathway: not_defined # 1 340 1 342 342 199 36.0 1e-49 MLHNGVYFHSVSELEQRPGLPGLLLQRFPREVREALSAKGRTKAAESSGCEIRFVTEAPY VRITLGAREKDGRVYVFRGDFFHCAYDLKAGTAVTLQLEEPERFAEVHRSALQSGAFSSD VWRVYCDRFTAVFYDVDAFGYEVRPPHKAEMPQLTLLAYGSSITQGAGSLSHTDSYVQQA ARRLGIDALNLGLSGTCYCEKEAADHLARGSGWDAAFLELGVNMRSVMDPPEFERRITYL LDEVTGRNPHKPVFVTTIYPNRATFFRDEEHVFTKRDLIFNDRLRRYVSDRNHPRLHLLE GSEIMTDFVSLTTDLIHPSDYGHIRMGENLARLLEPVLTELRTSIRETGGI >gi|333606287|gb|AFDH01000059.1| GENE 37 42532 - 43299 277 255 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 8 250 4 238 242 111 32 1e-23 MAIDLTGKIALVTGSNAGIGRAVAVALAAHGAKVGINCLSNTAQGEEVVETIRAAGGEAV LVQADVTDIAQIDRLVSEVEAAFGGTVDILVNNAGHLVQRVPNAEMTEDMYTRIMDVNFK STVFMCKRVLPGMAAKGSGRIVNMTSVAAHNGGGPGSSIYAASKGAVMAYAKGLAKEAAG SGITVNNVSPGFIGNTMFHATFTTDTARQATINGIPLQREGTPEDVAGAVLYLASDLASY LTGETIEVNGGMMMR >gi|333606287|gb|AFDH01000059.1| GENE 38 43296 - 45683 1662 795 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_3686 NR:ns ## KEGG: GYMC10_3686 # Name: not_defined # Def: heparinase II/III family protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 83 749 3 699 744 541 44.0 1e-152 MTRERERERDRERMRLHDGGESRQGLENVFGQQGPDKPAIQRYGKKGPQLRNAPRGVMPQ NEPSGGGRPAEASGPLSRSQASLRDKAARFPWARETAEAIREELLRLNAAGSLAIPREPG GWWHQYVCPVHHTELLFDPAEAEASSFRCPYGCVLEGEEYRGAWLVFKHQSLARAALEAA AVHASLGDESCAQLGKELLIAYAEQFPFYPVHAGAQGWMLKGRAFHQALTEAIWSTTLLG AYLLLRDEGVSFGEEETAALGIFMGLLEESMTEYRHILIHERQNAENNYTAWLNASLSCV YAAQGRKDALEALIEGEGGFKHHLSIGVNADGLEFEGSTYYHVFVLRAYLISARMAERFG IDLYACEGGNGQSMRGMFEAMADLADDRGVLPALHDGPMERGPYAREIAEIAEQGLSRYG IGGLRPILREAYRQLGGTLASPRARCGLEALLYGEDVQPDAAGEGGEPRRGARLWADTGF AAGRRAGNPLSFLADFGGHGGAHGHFDKLHLTVMHPAGTLTPDFGVVPYGSALRQAWYSE TRSHNTVTLDGLSQAPHTGQCRRFEETEEALYAWFQSTEAYPGCTLDRHLLLTDGWLLDW FRVTMDDGGLRSVEWWMHPAAEPLPVSEEPGERPGKGYPTAAGTCEGSAEVNPVQLAESL KDEPLTGASGGRYPLTGKRDQDPTAPAAVQMRYELGGESVYHTALVMPGDELLAVQTPGD SVDPSRLLTAIVHSHKGASADFVHVYRAGQAVDLKRRSEGVVEVAARGIDSGETCARTVR LSGKTGLELMEPGSE >gi|333606287|gb|AFDH01000059.1| GENE 39 45952 - 46986 867 344 aa, chain + ## HITS:1 COG:no KEGG:Bsph_3277 NR:ns ## KEGG: Bsph_3277 # Name: not_defined # Def: hypothetical protein # Organism: L.sphaericus # Pathway: not_defined # 6 179 19 192 232 246 67.0 1e-63 MAISYMDYTSPDLQFFYDLPKNTVFKTNSRNYINLLGYKQLNTLGSASLLDIYLSKGHYV EPHYHQNATELVYCVSGAATVSFINPFTNKLYHIPIKTGQVANVPQGWWHYEEASEDDTH LIAIFDAPTPEVILGSDILRLTPARVMAETYCLDEEKWKEAIAPITKTVAIGPLDNCRKK PQTVRDSGEPNGEIRGSGAAANVGSILPPGYPTASYGAAPAQPYPPENAPIGYRGPAAPY GSISSAGYPASGYPAPYSSPFYANPVSAANSYGRPYALPNAQAYTTQTHNQAYNQTQNQT QNQAYNTAYNTAYNQMYAQPYSRQPYPQTQSETYRTPAPGAPSF >gi|333606287|gb|AFDH01000059.1| GENE 40 47316 - 48215 834 299 aa, chain + ## HITS:1 COG:PA4827 KEGG:ns NR:ns ## COG: PA4827 COG2162 # Protein_GI_number: 15600020 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Arylamine N-acetyltransferase # Organism: Pseudomonas aeruginosa # 1 134 1 132 279 69 35.0 6e-12 MYTLTREEVRAYLKRIGISEIGAPTLLYLAELHKAHVKHLSWQTLDIFGGKPAPIGFKES VALILNQRSGYCFHLNGAFSVLLHSLGYRVNLHRAGVQPMGAEPRINSFHLGLTVDFSDE EAGNGTWIADVGLGDMPFEPLSLSYGRYVQGPYTYKVTESGVAADGWRLEHDPLASFPGV DYAPDVLTDLEEFKPNHEFYVRSEESPWFNKFLIRQRNAADGNELRGCIWSRRDASGLEK TELRTKSQWLEVLAGVFDEQLVNYSKPEREELWKRVEAAHSDWQKIKERQEKAGSLPTG >gi|333606287|gb|AFDH01000059.1| GENE 41 48323 - 48808 482 161 aa, chain + ## HITS:1 COG:all1149 KEGG:ns NR:ns ## COG: all1149 COG5500 # Protein_GI_number: 17228644 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Nostoc sp. PCC 7120 # 4 158 6 161 162 137 52.0 1e-32 MSGSLLTVLTFCSALGSGLNAGLFFAFSAFVMTALARIPAEQGIAAMQSINATILNPLFG IVFMGTALLSVVLAVTSCLNWEEPGSGWLLAGSLVYAAGFAVTMVFNVPLNNTLDAVNPG SAEGADLWSRYVVKWTAWNHVRTAACLAALAMFIQALRLKG >gi|333606287|gb|AFDH01000059.1| GENE 42 48926 - 49339 387 137 aa, chain - ## HITS:1 COG:mll4401 KEGG:ns NR:ns ## COG: mll4401 COG0346 # Protein_GI_number: 13473710 # Func_class: E Amino acid transport and metabolism # Function: Lactoylglutathione lyase and related lyases # Organism: Mesorhizobium loti # 19 133 1 115 116 179 73.0 1e-45 MLVEVVRRDITAYKRRRTMKVKRIIANLESPELAAAKRFYQEALGLDLLMDHGWIATYGN RETMNVQISIASQGGSGTPTPALSIEVDDLEEALARMEKAGFPAEYGPADEPWGVRRFFV RDPLGKLVNILSHGQEE >gi|333606287|gb|AFDH01000059.1| GENE 43 49425 - 49727 153 100 aa, chain + ## HITS:1 COG:BS_yetO_2 KEGG:ns NR:ns ## COG: BS_yetO_2 COG0369 # Protein_GI_number: 16077792 # Func_class: P Inorganic ion transport and metabolism # Function: Sulfite reductase, alpha subunit (flavoprotein) # Organism: Bacillus subtilis # 1 71 541 611 611 80 52.0 6e-16 MKENTAELITLLEQGGRLYVCDDGSRMATDVEEEIRQAYANIHQVSPDEARKWLDGLQTH GRYAKDVWAGVYSVEAQPEFAVTYAAGRSPVILRKGRRFL >gi|333606287|gb|AFDH01000059.1| GENE 44 49724 - 50107 418 127 aa, chain + ## HITS:1 COG:lin0429 KEGG:ns NR:ns ## COG: lin0429 COG0346 # Protein_GI_number: 16799506 # Func_class: E Amino acid transport and metabolism # Function: Lactoylglutathione lyase and related lyases # Organism: Listeria innocua # 1 126 1 125 126 147 60.0 3e-36 MKIEHAALWTADLEQMKAFYETYFCAAAGDKYTNVKKQFQSYFLQFESGARLELMTKPAC IGRDEGRVYLGYAHIAFSVGSEDKVVELTERLRRDGYTVEGEPRVTGDGYFESVVLDPEG NSIEITV >gi|333606287|gb|AFDH01000059.1| GENE 45 50565 - 53078 2157 837 aa, chain + ## HITS:1 COG:BH0714 KEGG:ns NR:ns ## COG: BH0714 COG0178 # Protein_GI_number: 15613277 # Func_class: L Replication, recombination and repair # Function: Excinuclease ATPase subunit # Organism: Bacillus halodurans # 1 831 1 820 820 1021 61.0 0 MSSEIVIRGARENNLRNVTLRIPKYKLVVLTGPSGSGKSTLAMDTLQRECQRQYMESMGM TSDAIAKPKVDAIIGLSPSISVGQHVTNRNPRSTVGTITDIHTYLRVIYEKLGERPCPDC GKRFVPAPDGETAGQGDGEDGEDTQPAVKCPHCGSGMERLTRRYFSYNTPEGACGECGGL GHTVTLNTDAVFDEEKSLRNGCVAVWYDMITKYNLSILKAAGEHYGFTFDADLPLKEYGA VQRDLLYYGVESEAFSAHFPDVKLPKSVGGGKFEGVVTGIWRRYKEKGGESGESALFVEA TCAACHGARLKESIRQVTVGGASISDISGWALQDALGWLQRLMGELQPEARETVGSLLHD LTVRTERIVAVGLGYLSLSRQTVSLSGGEAQRLRLASILGSGLTGVLYILDEPTAGLHPR DTEGLIGVLKQLRDLGNTVLVIEHDVEMMQAADHVIDMGPGAGSFGGRVVGEGTLAELMA TPDSVTGAFLRESSGMTASPSRQRRPGNGRFLNVHDAYERNLKHIDVSLPLGCLTAVTGV SGSGKSTLLFDLVAAGGRDEQQRRGCRNITGFGGIGGIVTVDQSPIGRMSRSNVATYTDV FTAMRSLYAGLPEAKRAGLTAKHFSFNTPGGRCEHCQGLGVVPMDMFFLPGLEVRCPVCR GKRFKEEVLRVTCNGHSISDLLNMTVQESLPLLQGRIKMDGQIALLTEVGLGYLHWGQSV RTLSGGEGQRIRLAKELGGKTKQHTLYLLDEPSTGLHPRDTRQLLVLLNKLVDAGNTVIV VEHNLDMIRECDWVVDIGPEAGDKGGEVVATGTPETVAAVAASHTGRFLKKALAAAY >gi|333606287|gb|AFDH01000059.1| GENE 46 53397 - 54165 515 256 aa, chain + ## HITS:1 COG:CAC3648 KEGG:ns NR:ns ## COG: CAC3648 COG0456 # Protein_GI_number: 15896881 # Func_class: R General function prediction only # Function: Acetyltransferases # Organism: Clostridium acetobutylicum # 6 245 2 237 292 92 28.0 8e-19 MPDTGIVLPVNRLTHDQLEQVKELEKRCNEYDSITLKLNWDMLENRKAEECSDWLYVENG KAVGFLALFAFKSSEAEISGMVDPEYRRRGIFRKLFEAAAEECRKRGIPEQLLIVQRGSE SGRSFAGYAGAAYEFSEYWMELPSGYDRDVLNSVISAGQIELRPAEQADMDLAIRLDVAG FGVTESDARGFNEQKLAAAGESFWIAELEGIPIGKINIQLYDGGFISGFCVLPEYRGQGH GRVILGKAISIAESNR Prediction of potential genes in microbial genomes Time: Sun Jul 17 09:09:58 2011 Seq name: gi|333606279|gb|AFDH01000060.1| Paenibacillus sp. HGF7 contig00123, whole genome shotgun sequence Length of sequence - 6335 bp Number of predicted genes - 8, with homology - 7 Number of transcription units - 3, operones - 2 average op.length - 3.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 2/0.000 - CDS 11 - 1189 1340 ## COG0477 Permeases of the major facilitator superfamily 2 1 Op 2 . - CDS 1245 - 1706 567 ## COG0789 Predicted transcriptional regulators - Prom 1849 - 1908 4.3 - Term 1897 - 1945 8.2 3 2 Tu 1 . - CDS 2007 - 2801 819 ## COG0500 SAM-dependent methyltransferases - Prom 2832 - 2891 1.7 + Prom 2791 - 2850 4.5 4 3 Op 1 2/0.000 + CDS 2916 - 3773 748 ## COG0388 Predicted amidohydrolase 5 3 Op 2 . + CDS 3896 - 4543 436 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 6 3 Op 3 . + CDS 4613 - 5284 607 ## GY4MC1_3095 hypothetical protein 7 3 Op 4 . + CDS 5303 - 5563 128 ## 8 3 Op 5 . + CDS 5566 - 6261 346 ## COG0456 Acetyltransferases + Term 6287 - 6327 4.7 Predicted protein(s) >gi|333606279|gb|AFDH01000060.1| GENE 1 11 - 1189 1340 392 aa, chain - ## HITS:1 COG:lin1446 KEGG:ns NR:ns ## COG: lin1446 COG0477 # Protein_GI_number: 16800514 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 6 368 5 371 397 373 56.0 1e-103 MDQGIKKQTRARYVTVFATFLAFMGIGVVDPILPIIAEKIGANPAQIELLFTAYILTMAI MMIPSGLAATRFGDKKMMVAGLAVVTVFAFLCGASGGITELALFRAGWGFGNSMFFATAM TLLIALTPSANTAVGMYEAAIGLGMAGGPLVGGLLGGISWRLPFIATGCFVLIAFLLVLF MIQEPEKKSVRKAAGFKELLHLATHKPFLRVAGSSMFYYYGFFVVLAYSPLMLHMSAIQL GLVFFGWGLMLAYGSAKLAHNLEERFKPSQIIPWSLGAFCLILLLLFLVHTLWLQILLII VIGLFCGLNNALFTSHVMEVSPFERSITSGAYNFVRWLGAAIAPVLSGYIAHHLSAQLPF AVAAGLALIAVIAMSVWRSRPAKAGATGPQAG >gi|333606279|gb|AFDH01000060.1| GENE 2 1245 - 1706 567 153 aa, chain - ## HITS:1 COG:BS_yfmP KEGG:ns NR:ns ## COG: BS_yfmP COG0789 # Protein_GI_number: 16077806 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus subtilis # 1 136 1 136 140 103 44.0 1e-22 MTRLKIDDVAKETGLTKRTIRYYEEIGLLEPPTRSEGGVRLYTQENVDRLKKVLLAREVL GFSLQELQHFLAIDTLLASYREGSDGYAVELKKQEELKRVADGLAEQVDMLDLKIHKMEA FRKDMEELLSKVREAIGQPQPAASSGKISSSGQ >gi|333606279|gb|AFDH01000060.1| GENE 3 2007 - 2801 819 264 aa, chain - ## HITS:1 COG:CAC3659 KEGG:ns NR:ns ## COG: CAC3659 COG0500 # Protein_GI_number: 15896892 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Clostridium acetobutylicum # 6 264 8 263 264 289 55.0 5e-78 MQKQFSEHNQTAWNQHAYEAWLNRFGTPEEAAALIGRNPEGTVRSFSRFLGDLSGIKAVN LLGSHGSKAAALALLGASEVTVVDIAAENAKYGTELAEAAGVHVRYIVSDVLELPEEELT GDYGLALMEFGILHYFLELKPLFDVVVKLLASGGRLILQDFHPVTTKLISSRGSTAKVRK HKVTGDYFDTSIEETDVAYSKFLPGQDESALIKVRHRKWTLGEIVTAAASSGLFIEILEE EPNRSSDVYDKGIPKSFTLVAKKL >gi|333606279|gb|AFDH01000060.1| GENE 4 2916 - 3773 748 285 aa, chain + ## HITS:1 COG:BS_yhcX_2 KEGG:ns NR:ns ## COG: BS_yhcX_2 COG0388 # Protein_GI_number: 16077990 # Func_class: R General function prediction only # Function: Predicted amidohydrolase # Organism: Bacillus subtilis # 4 281 30 307 313 284 45.0 1e-76 MKFRVSAVQHHLHTISSFQEFADQVEHYVKTAQEFDSDFVLFPELFTTQLLSIRNPGEGA LSINDLPSFTDSYMELFKGLAKSTGMHLIGGTHIIEDGGRLYNSAFLFYPDGRIGEQRKL HITPTEVKEWNMGAGDALQVFDTDKGRIAILVCYDMEFPEIVRMAKARGADVIFCPSCTD DRHGFHRVRYSCHARTIENQIYVVVTGTIGSLPTVDFMRGNFGQAAVLTPNDVPFPPRGI LAEGEINDDMIITADLDLALLEEVREKGSVTTWRDRRTDLYTDWK >gi|333606279|gb|AFDH01000060.1| GENE 5 3896 - 4543 436 215 aa, chain + ## HITS:1 COG:BH3829 KEGG:ns NR:ns ## COG: BH3829 COG0454 # Protein_GI_number: 15616391 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Bacillus halodurans # 13 215 5 206 206 213 50.0 2e-55 MYVFDGEKPVPALIRSYSEADVEALIEVQRLSFPPPFPEELWWNEEQLRSHVRLFPEGAL CVEVGGKIVGSMTALRIRFDPLHPEHTWEEVTDGGYIRNQDPEGDSLYVVDVCVMPAYRK LGLGKWLMFSMYETVVHLGLRRLLGGGRMPGYGAQAGKMTADQYVDAVVAGLLHDPVLNF LLRCGRMPVAVLPNYLEDEESLNHALLMEWRNPFL >gi|333606279|gb|AFDH01000060.1| GENE 6 4613 - 5284 607 223 aa, chain + ## HITS:1 COG:no KEGG:GY4MC1_3095 NR:ns ## KEGG: GY4MC1_3095 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y4.1MC1 # Pathway: not_defined # 1 223 1 223 223 334 70.0 2e-90 MEYIRITDINDPLFAKMHQLMQTVFPAEEVLDYDLWKEPLEDPGIRVFVAVHDGEVVGAT EYRYYTDLGIAMTDFTIIGQPGLGIGRFLSRKRQHDLADLAAQSGKPMIGMFAEIYDPYR VEDHSFGGVKPMDPFVRREVLSHLGYRRLNFPYVHPSWQNDGEAVSELDLCFMPSDENTE YVPSSLIADFLTRYYSVLENKPPTWQEMVSRLRKSERTALLPL >gi|333606279|gb|AFDH01000060.1| GENE 7 5303 - 5563 128 86 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTLDQEQAQPGGAKPSNSLRGVGSLRIAAVRGGLSQDDLNQLDSLADTCLSHDRFTVKLN RNMLKERARTRSTILRHSTALASSVI >gi|333606279|gb|AFDH01000060.1| GENE 8 5566 - 6261 346 231 aa, chain + ## HITS:1 COG:CAC3648 KEGG:ns NR:ns ## COG: CAC3648 COG0456 # Protein_GI_number: 15896881 # Func_class: R General function prediction only # Function: Acetyltransferases # Organism: Clostridium acetobutylicum # 1 230 64 292 292 87 28.0 1e-17 MYSFQTSEVEISGLVHPDYRRSGLFTHLLQLAAGEAETRRIPKLVFIAPRSSSGAGPFVK KIAGYAYSEYVMELLHEGRPEAAAGADKVGIRPAGPADKELLIRLNQDGFQMTREDAAYY VESTLAKNNDNHTFIAEAGGEPIGKIGLILLGDTAMIIGFVIAPELRGRGYGRAVLFRTI RHIRQSLGCKIIKLGVAAANDHALGLYRSCGFEVTDANDYYECGTSSYSYA Prediction of potential genes in microbial genomes Time: Sun Jul 17 09:10:10 2011 Seq name: gi|333606271|gb|AFDH01000061.1| Paenibacillus sp. HGF7 contig00198, whole genome shotgun sequence Length of sequence - 6013 bp Number of predicted genes - 7, with homology - 5 Number of transcription units - 5, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 501 - 701 69 ## - Prom 912 - 971 3.5 - Term 966 - 1000 -0.7 2 2 Tu 1 . - CDS 1023 - 1925 323 ## COG0583 Transcriptional regulator - Prom 1984 - 2043 5.7 + Prom 1960 - 2019 3.6 3 3 Tu 1 . + CDS 2069 - 3088 395 ## COG2021 Homoserine acetyltransferase 4 4 Tu 1 . - CDS 3305 - 4513 179 ## BBR47_42370 hypothetical protein - Prom 4578 - 4637 2.2 5 5 Op 1 . - CDS 4772 - 5332 244 ## PPSC2_c5391 hypothetical protein 6 5 Op 2 . - CDS 5393 - 5470 95 ## 7 5 Op 3 . - CDS 5493 - 5951 241 ## GYMC10_2774 cell wall assembly/cell proliferation coordinating protein, KNR4-like protein Predicted protein(s) >gi|333606271|gb|AFDH01000061.1| GENE 1 501 - 701 69 66 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVGVLSLKFIEMVWAVIAAHQDNVLLGQRIMMNAFFRMYFRVDHQSHIHTSTDLVNLVLF TCTVGI >gi|333606271|gb|AFDH01000061.1| GENE 2 1023 - 1925 323 300 aa, chain - ## HITS:1 COG:BS_ywqM KEGG:ns NR:ns ## COG: BS_ywqM COG0583 # Protein_GI_number: 16080669 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus subtilis # 1 293 1 292 293 234 42.0 1e-61 MELRQLITFRTVAFTLNFSRAAEVLNYVPSNVTMQIKALEEELGVRLFDRLGKQLVLTTA GKRFLTHIQSVLDKLDEARSVVHDNEVLSGTLTISANEVICAYRLPAVFQRFRSRHPGVR LIFRSVPNQELKQTLFEGTADVVFMLDEPIRSTGLAVEPLVEETFRLFAAPDHPLAKRTV MPLEDFHGEVFLTNEKGCPYRTMFDRSFEKEGIDSITYLEFQSAEAIKQCAISGIGIAFL PEIVAGAEGERGELVALPWQISGLHVHTQMLWHKDKWLSPILLSFIETAREVLAIEEENK >gi|333606271|gb|AFDH01000061.1| GENE 3 2069 - 3088 395 339 aa, chain + ## HITS:1 COG:Cgl0816 KEGG:ns NR:ns ## COG: Cgl0816 COG2021 # Protein_GI_number: 19552066 # Func_class: E Amino acid transport and metabolism # Function: Homoserine acetyltransferase # Organism: Corynebacterium glutamicum # 3 333 15 347 349 194 35.0 2e-49 MDYEIFELGDVTLQSGVTLPSAFLAYKTYGTLNEKKDNVIVYPTAFGDQHVQNEWLIGNG MALDPQKYFIIVPNLLGNGLSSSPSNTPPPFDRANFPEVTIYDNVKLQHRLVTEKLGIQK IALVVGWSMGGIQSFQWGASYPDMVERIAPFAGVAKTWPHTYVVLDGMKAALMAAVRFDP SKLNQLTSVDMCAVGRVYAGWGLSQEFYREELYCELGYDSLEDFVAGVWEDSFMKMDPHN VLAMLWTGQNADISANPSYNGDFDKALKSIKALACIMPGSTDLFCSADDNEYEAKRIPNA VFSPIKSIWGHFAGRGINNSDNQFIEDNLKHLLALSTNG >gi|333606271|gb|AFDH01000061.1| GENE 4 3305 - 4513 179 402 aa, chain - ## HITS:1 COG:no KEGG:BBR47_42370 NR:ns ## KEGG: BBR47_42370 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 1 402 1 406 406 638 79.0 0 MPNDSQARPSTGSVREVGRYSIDLTGPRSHTLVIQPGVGSLSIGPSQLGKKADLHVAPDA HIDWTVFDAFATPAGSPWPRFLHYTGSDSGFFDWAQKRPIEEMTWTPILSADTVADASQS NLHGLHIELDQSGKSLRLKLPKRYFRLSVSGDLSRFSATGDLPYSLTLAPSTGRRKNDPP FLLPDLGELHQVTSLTLQNTPLGQPISLECLNRFPNLDSLSLWGNFCDLDLMTHHAQLTN LELRFMPDLGDLPTLNAWPLLDRFIAYNVEEIAGKRLKQQMKTRAETRPWTDHASVSQLR KPEWWTTEFGRPFSSWPKRLAKLANEAYNVAQATLSEARSFAEAEAAITAFTVRFNNLKG IETTEREDLGEAVWQLSQSDHLIGQPITEEMAQRWFDAARDY >gi|333606271|gb|AFDH01000061.1| GENE 5 4772 - 5332 244 186 aa, chain - ## HITS:1 COG:no KEGG:PPSC2_c5391 NR:ns ## KEGG: PPSC2_c5391 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa_SC2 # Pathway: not_defined # 1 186 1 186 186 300 86.0 2e-80 MKPMQEIETLAIEIADAARTSFRALFENGERYYYCTLYTTGEGHAPSISAWSWEALEMES ARQGDESDTPGSTIAELIKWSYADSPYCCFGDENFDHVKQRFIERPFIADLDNDEGNREF DLRLKAMELAMKMLDDEGVFALNQLRESVCVLVEVMPPDEINTEIALRLNRAESPAMQVW LAEAAE >gi|333606271|gb|AFDH01000061.1| GENE 6 5393 - 5470 95 25 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MEACALRLDFEISRARVIWAQLETK >gi|333606271|gb|AFDH01000061.1| GENE 7 5493 - 5951 241 152 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_2774 NR:ns ## KEGG: GYMC10_2774 # Name: not_defined # Def: cell wall assembly/cell proliferation coordinating protein, KNR4-like protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 152 1 152 155 203 73.0 2e-51 MYERLAEKLKTTSALKWFPGRGAEESWIAEAEEELGFRLPPSYRWWLVHYGNALLSGGNI LVIAAPEHREYYDGDLLYIHRLNKAEEWWVGRFPHRLDLFVPDSDELYFFDTSTRDKQGE FPIMCYDLMNDLIDEYASTFAEFLERLIDERS Prediction of potential genes in microbial genomes Time: Sun Jul 17 09:10:33 2011 Seq name: gi|333606269|gb|AFDH01000062.1| Paenibacillus sp. HGF7 contig00059, whole genome shotgun sequence Length of sequence - 2310 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 2309 1785 ## COG1020 Non-ribosomal peptide synthetase modules and related proteins Predicted protein(s) >gi|333606269|gb|AFDH01000062.1| GENE 1 2 - 2309 1785 769 aa, chain + ## HITS:1 COG:all2648_1 KEGG:ns NR:ns ## COG: all2648_1 COG1020 # Protein_GI_number: 17230140 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Non-ribosomal peptide synthetase modules and related proteins # Organism: Nostoc sp. PCC 7120 # 4 658 391 1060 1063 499 41.0 1e-141 EEQGDELLFRLEYCDALYERETAERMAGHFVQLIDAALADPQAKLSALSMLTPEERTQVL ESFNDTTRAYSSDDMLTIHGLLERQAARTPDRPAVVSGKRQWSYRELNERANRLARTLQA KGVGRESLVGILAERSPEMIAAALAVMKAGGAYVPIDPDYPEARIRYMLEDAGVSLLLAQ SRLRNRVAFGGEWLLLDDPQSFSGDGSNLADSVKAGDLAYVIYTSGTTGQPKGVLVEHAG VCNYKLFYDEALKVCEQDRVLQFASFSFDAACSEMTMSLFGGAALYVPDASVIADYRLLE QYVRDNGITVATLPPTYAAYLNPAHMPSLTRLITAGSASSPELARRWSGFVRYFNNYGPT EDSICSTAWPYSTLDDTAKTVPIGRPIANHQVYILGADQSIMPVGIPGELCVSGIGLARG YLNRPELTAEKFVPVPFAPERRMYRTGDLARWLPDGNLEYMGRIDDQVKIRGYRIELGDV LTQLNRLPSVREALIVAHADKAGAVELCAYFTAEKTWSVGELRQALLQELPAYMVPTYAV QLAAFPLTPNGKIDRSALPAPDVDLAERSGEGTEAPRTALEARLTELWREVLGAEAVGIR DHFFEIGGHSLRAAALTARIHQALQVEVPMRMVFEHPTVESLAQAMEGLQPNPYAGIPAA GEQESYPVSSAQKRLYVLSQLETDGFGYNMPGVLRLDGEPDVARLEQAFRALIRRHEALR TAFTLRDGVPVQRIAPKEAPPEFTLPRIRVQGEAEARQAARAFIRPFDL Prediction of potential genes in microbial genomes Time: Sun Jul 17 09:10:38 2011 Seq name: gi|333606252|gb|AFDH01000063.1| Paenibacillus sp. HGF7 contig00011, whole genome shotgun sequence Length of sequence - 15364 bp Number of predicted genes - 18, with homology - 15 Number of transcription units - 13, operones - 4 average op.length - 2.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 904 582 ## PPSC2_c3583 peptidase S8 and S53 subtilisin kexin sedolisin - Prom 1024 - 1083 2.5 + Prom 964 - 1023 6.0 2 2 Tu 1 . + CDS 1097 - 1597 605 ## Pjdr2_2249 hypothetical protein + Term 1610 - 1644 5.0 3 3 Op 1 . + CDS 1741 - 1950 205 ## PPE_03159 hypothetical protein 4 3 Op 2 . + CDS 1998 - 2414 393 ## PPE_03158 hypothetical protein + Term 2424 - 2459 5.1 + Prom 2460 - 2519 5.0 5 4 Op 1 24/0.000 + CDS 2554 - 3477 936 ## COG1131 ABC-type multidrug transport system, ATPase component 6 4 Op 2 . + CDS 3474 - 4247 867 ## COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component + Term 4257 - 4286 2.1 + Prom 4287 - 4346 3.7 7 5 Tu 1 . + CDS 4375 - 5157 804 ## COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) + Term 5173 - 5224 17.4 + Prom 5186 - 5245 2.0 8 6 Op 1 7/0.000 + CDS 5389 - 6555 1068 ## COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes 9 6 Op 2 . + CDS 6558 - 7775 1250 ## COG0301 Thiamine biosynthesis ATP pyrophosphatase + Term 7856 - 7888 -0.8 10 7 Tu 1 . + CDS 7926 - 8597 879 ## COG0861 Membrane protein TerC, possibly involved in tellurium resistance + Term 8657 - 8692 5.1 + Prom 8656 - 8715 4.3 11 8 Tu 1 . + CDS 8801 - 9625 604 ## GYMC10_2802 hypothetical protein + Term 9688 - 9727 10.2 + Prom 9668 - 9727 3.1 12 9 Tu 1 . + CDS 9754 - 9954 71 ## - Term 9676 - 9714 6.2 13 10 Tu 1 . - CDS 9906 - 11114 1324 ## COG0477 Permeases of the major facilitator superfamily - Prom 11176 - 11235 4.0 + Prom 11143 - 11202 5.5 14 11 Op 1 . + CDS 11277 - 13010 2112 ## COG1785 Alkaline phosphatase + Term 13044 - 13082 8.3 15 11 Op 2 36/0.000 + CDS 13094 - 13870 670 ## COG1136 ABC-type antimicrobial peptide transport system, ATPase component 16 11 Op 3 . + CDS 13867 - 15150 1217 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 17 12 Tu 1 . - CDS 15114 - 15230 64 ## 18 13 Tu 1 . + CDS 15232 - 15364 128 ## Predicted protein(s) >gi|333606252|gb|AFDH01000063.1| GENE 1 1 - 904 582 301 aa, chain - ## HITS:1 COG:no KEGG:PPSC2_c3583 NR:ns ## KEGG: PPSC2_c3583 # Name: not_defined # Def: peptidase S8 and S53 subtilisin kexin sedolisin # Organism: P.polymyxa_SC2 # Pathway: not_defined # 6 301 12 258 626 92 24.0 3e-17 MRRPTAALGGMILGSLLVVTSACQTKPEARNIQPEAELKYKQALVEQDVAVTDQLCRNQC LLHVNQMYASLNQADPKKIKETLKDMQSKHGHIIMLDWIPAKSDPGVVPGKSPSSVLPDS FTKTGSGTSGGSGTTGAPETPGASSTPSGSGSSGSAAGASEIVSGKLSKELAKSAQPYIE EAKKAASQGNAYQSPNFTVADKPYFVLNVPAPDKKSSVVAVVRQHILQEVSNHQRKNLRL QSFHSDKSRWKIESVDTDTLRSKRVTHPDDHEGTSHYERHDVVVQFNRPPREAELSRIRT E >gi|333606252|gb|AFDH01000063.1| GENE 2 1097 - 1597 605 166 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_2249 NR:ns ## KEGG: Pjdr2_2249 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 1 165 1 166 166 205 64.0 4e-52 MAMDNVKKACETTRKKLKEAADRIESFLNTYSLPQLNAESDSEMEEFYRGYLQDTRHLLV FCEVAYEKLGVSLRRPTFNVDFTEKVLYEVYHNCISPFFYPKNECYSEDGRYAYTGQDAI RFRKKPNREVRDLTIELSKIFEELREELSYYENDYITQRRMQGERV >gi|333606252|gb|AFDH01000063.1| GENE 3 1741 - 1950 205 69 aa, chain + ## HITS:1 COG:no KEGG:PPE_03159 NR:ns ## KEGG: PPE_03159 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 2 68 7 73 75 78 58.0 8e-14 MPEVKCAVSNCAYWGQGNNCRADIIMIEVDEHANADLSSEFAGEEFDTRHKDQAADRANT CCHTFKEKK >gi|333606252|gb|AFDH01000063.1| GENE 4 1998 - 2414 393 138 aa, chain + ## HITS:1 COG:no KEGG:PPE_03158 NR:ns ## KEGG: PPE_03158 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 1 137 1 129 130 70 30.0 2e-11 MTHHKSRKKQERTREHSQKHDPAKANSSAGREHAGHSDREEYAGELAPGLAGRNVEDAGA RSREDADSDSWISARTLGVMALVSSVLSFFLLPFVLGPLGAILGYMAFADGSRKAGGWAI AIGLISFFSNLFFVPFVI >gi|333606252|gb|AFDH01000063.1| GENE 5 2554 - 3477 936 307 aa, chain + ## HITS:1 COG:BS_yhcH KEGG:ns NR:ns ## COG: BS_yhcH COG1131 # Protein_GI_number: 16077973 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Bacillus subtilis # 7 301 5 295 305 302 52.0 7e-82 METEQAMELVGVSKTIGGKPIIKDLSFSVRRGEICGFLGPNGSGKTTTIRMMVGLMSMSA GEIRIAGFPVRTQRSKALAHVGAIVENPELYPYMSGHKNLVHFARMAAGPIPAGRMEEIV ELVGLTDAIHDKVKTYSLGMRQRLGIAQALLHRPTVLILDEPTNGLDPAGIRELRDYLRN LAKTESIAILISSHLLAEVELICDRALIIQEGRLVGERIVRGGATAEDELVLVEFELKGI EAGEHTAGEYGLLRRENGLYTANLSKSAIPEIVSRLVGQGIDVYQVAIRKPTLEDTFLQL TKGEDSR >gi|333606252|gb|AFDH01000063.1| GENE 6 3474 - 4247 867 257 aa, chain + ## HITS:1 COG:BS_yhcI KEGG:ns NR:ns ## COG: BS_yhcI COG1277 # Protein_GI_number: 16077974 # Func_class: R General function prediction only # Function: ABC-type transport system involved in multi-copper enzyme maturation, permease component # Organism: Bacillus subtilis # 63 257 107 312 313 90 32.0 2e-18 MKFLSLVQNEIMKITSKKSTWIFYIFLLLLSLFVGLPIKLWIPGYSDGHNYISFAGTVFM VCSLFVTLFALVLGAQTVTEEYKDGTIKQLLIRPAGRTAILLSKYTACVIMVLIAYAVLF LSSIAAGAALFGTAELPDEHFIVLSSSYWYSLPDMLFMFTLAFFIATVFRSSALAITVSI VMNLAGSAFAALQYNWARYLIFNNTNWKIYDPNPLVNQDSPPPFPGMTFGFSLTIYVLHL IVLLGVTILVFRKRDVA >gi|333606252|gb|AFDH01000063.1| GENE 7 4375 - 5157 804 260 aa, chain + ## HITS:1 COG:BH2852 KEGG:ns NR:ns ## COG: BH2852 COG0741 # Protein_GI_number: 15615415 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) # Organism: Bacillus halodurans # 95 223 73 210 232 122 52.0 7e-28 MSIDPRLMKELLKLEMLNKSTLFSGAGGAVSGASESGEEFSSLLNTLLMEQGGLSADPTG EDALGILPLEALQGAWTGSAGAVPAAAGTGLSVQRQAKALRSYETAAGAVQASLPASARE AAYDAYIVQASERTGVDPALIKAVIRQESSFNPNTVSRAGAKGLMQLMDGTANGLGVTNA FDPQQNIQGGAQYLSYQLKRFDGNVGVALAAYNAGPGRVNKLGIKNDSDLLEKMHLLPNE TQQYVKKVMNAKERYDREFT >gi|333606252|gb|AFDH01000063.1| GENE 8 5389 - 6555 1068 388 aa, chain + ## HITS:1 COG:BH3204 KEGG:ns NR:ns ## COG: BH3204 COG1104 # Protein_GI_number: 15615766 # Func_class: E Amino acid transport and metabolism # Function: Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes # Organism: Bacillus halodurans # 1 380 1 378 380 336 48.0 4e-92 MLYLDNAATTQPYKEVAETVADVMLQHFGNPSSIHKFGLDAEKLVKKSREVIASALKARP EEIIFTSGGTESSNLAIKGAAYRYRSRGRHLITTAVEHASVTEAFRQLQAEGFEVTVLPV DETGQVRVEDLKAAVTGETILVSVMHVNNEMGRIQPIGEIGRWLREKQTVLFHVDAVQGV GKLPLSPDELGIDLMSASAHKFKGPKGAGFLYKRTGIDLQAQLAGGGQEQGIRSGTENVP LIVGMAKALRIATDNLEEDIRRKRAFRTIAVEGILGLPGLALTGSREEEDMAPHLVHFTY PGMNSEVVVHALEQRGIYISTKSACSSGEPEPSKVLLSMGLDRAHASSGLRVSWTEEHSE DDARRFVEALRGVIADLVPVSARTKGGR >gi|333606252|gb|AFDH01000063.1| GENE 9 6558 - 7775 1250 405 aa, chain + ## HITS:1 COG:lin1634 KEGG:ns NR:ns ## COG: lin1634 COG0301 # Protein_GI_number: 16800702 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine biosynthesis ATP pyrophosphatase # Organism: Listeria innocua # 8 400 4 394 403 333 42.0 4e-91 MMSPLKPDLLLVRFGEMMLKGKNRSRFEKKVVSQLRGVLAPFAQVKLVTEYGRVYIRLSD APAEDVGKAVSKVFGIETYSPVYTAPSDSEAIQAVAVALMKKVVKRPQTFKVEVKRVDKS FPFDTLEMNRIVGGAVLRACPELSVDVRSPETTLRVELREQGALLFVETFEGAGGYPLGT NGKAVLLLSGGIDSPVAGWQAMRRGLELEAVHFHSFPYTSERAKEKVIQLARKLSAYSGG SIKLHLVSFTEVQTSIYAAYKDNLLVTILRRAMYRIAETIAEREKALALVTGESLGQVAS QTLPSLNAIGRAVSLPVLQPLIATDKKEIIRMAEQIDTYTLSIQPYEDCCTLFLPPSPST NPNLRVIEAIERGLPQLEEWILRAAQEAETVVVTPEDKAEEDAYF >gi|333606252|gb|AFDH01000063.1| GENE 10 7926 - 8597 879 223 aa, chain + ## HITS:1 COG:BS_yjbE KEGG:ns NR:ns ## COG: BS_yjbE COG0861 # Protein_GI_number: 16078216 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane protein TerC, possibly involved in tellurium resistance # Organism: Bacillus subtilis # 8 184 9 185 218 149 46.0 4e-36 MLEQLGLFLQIMLINIVLSGDNAVVIAMASKNLPAAQRRQAVWWGAFGAIALRLILTIIA VGVLKIPFIQAAGSVFLLWIAVKLLMDNDAHSSVLQASTLSKAVWTIIAADFVMSLDNVL AIAAAAGNNLTILILGIGLSIPIIIWGSAVVVELLEKMPVLIYMGAAVLGFTAGEMFLSD AKLSGWLLGEWPHWPVPWLGAVLVVGIGLLKKWLLPAKRKTVF >gi|333606252|gb|AFDH01000063.1| GENE 11 8801 - 9625 604 274 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_2802 NR:ns ## KEGG: GYMC10_2802 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 46 270 35 262 269 73 23.0 7e-12 MQTENHHAWTEDPAKFQEFYAKQFRVLLGGEKLLEKTTGGSDFLQEGLQEMIGHYKDVYK TEHLRAIGATLSSYLSLIPAAFLHAMSHHNIALPLDPASTSIQYDQESFYLHLQGSPSTF AVPELSREERRAHLVGGLFDSYMKPVFQRLRELTGIDKHSQWSYAALTLHRSYQNWMDTA ATEELKLLLREDYEYIVGVSDPAWFECSGIRDRHPLDLPFKFVPDVYNAGKTVRMKYRCC LYYKLTDTYCYTCPAITEEHRSRRAEEIISARSK >gi|333606252|gb|AFDH01000063.1| GENE 12 9754 - 9954 71 66 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MQGQLAAAVVQAVDGVMRCRTVRRDPACAGLSAVLFFAACPEFTKRLVKPLYAALSCALL RRVSSR >gi|333606252|gb|AFDH01000063.1| GENE 13 9906 - 11114 1324 402 aa, chain - ## HITS:1 COG:BS_ywoG KEGG:ns NR:ns ## COG: BS_ywoG COG0477 # Protein_GI_number: 16080698 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus subtilis # 8 386 3 379 396 189 32.0 8e-48 MATNRKSKKKPLWTRDFAVTSLSNLLLFFSFQLLIPTIPLYAAGIGGGQTQIGLAMGTFT VASLLTRPFAGRALDTIGRRHVLSAGLALCGLAVLGYSAAAVVAMLLALRFIHGIGWGIS TTSLGTVISDIIPSERRGEGMGIYGLSNTMAMALAPLTGLWIAAEYGFHPLFIFSTALAF SALLLSLFIRSGRKKPPASSRPFSWRGFREGLIEPGALLPSLLLFCTAVCYGGIVTFLTL FGKEAGIGNVGWFFVCNAVMLLITRPLTGLVYDRKGPAWVLFPGAFFTGAGLWLLSYAHS ASSLAAAAAVFGAGFGSVQPALLAWTIDRTEPSRRGAANGTFYSANDLGIGTGSMLLGAF ASLVGSYGAAYRWSVLLIVLLIVIYSVYLLLTRRKSAQLKAA >gi|333606252|gb|AFDH01000063.1| GENE 14 11277 - 13010 2112 577 aa, chain + ## HITS:1 COG:MA4354 KEGG:ns NR:ns ## COG: MA4354 COG1785 # Protein_GI_number: 20093141 # Func_class: P Inorganic ion transport and metabolism # Function: Alkaline phosphatase # Organism: Methanosarcina acetivorans str.C2A # 39 476 52 495 585 251 37.0 2e-66 MKKIIHRSMIAGTAIALLPFTLASGALAAGTTAAEKEQKAVSKNVIVLIGDGMGPAQVSA GRTFSKNKLGKDHLELDSYYVGQATTYADRGEDGGTIVSGEVTDSASAGTAFATGNKTYN AAISVSNEDVSKPFASVIEASELAGKATGLVTTARITHATPAVYASHVRNRDNESAIASQ YLNDGNVDVLFGGGKQFFLSKDEKGKRTDKTIIPDFEKEGYKVVYDKQGLSSLDGKTGKA LGLFGNSHVDYVLDRTNTVPNLAEMTSKAIDILSANPKGFTMMVEGGRIDHAGHANDLPS VVQEMLDFDAAVKVAMEFAKKDGNTSVVVTADHETGGLSLSRDNIYEINVDAWDDQQKSS ELIGGELKNAKTVEDVKALVAKYTGHTDLTDDEAKFILAGDGSSYKQEGAFNAVMSKRYL VGWSGHGHSAVDVGVWAYGPIAEKVKGQIDNTEIARAVASVAGIDLKAATDKLQSEYAYP KFKVTREGAVLYPARALAETLGAEVKWNGDAREVVLSAGGVNLSVNIDTQAAALNGQPSG FKANIDNNVLYLPLEAFNKLTGKNLTWDALSERIKLK >gi|333606252|gb|AFDH01000063.1| GENE 15 13094 - 13870 670 258 aa, chain + ## HITS:1 COG:BH3122 KEGG:ns NR:ns ## COG: BH3122 COG1136 # Protein_GI_number: 15615684 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, ATPase component # Organism: Bacillus halodurans # 1 205 1 204 227 160 44.0 3e-39 MIKLTGVKKQFRLPGEGELPILSVPEWEVGEGAQLALTGPSGSGKSTLLHLLCGVLAPDE GQITVDDVPLHAQSQAQRDRFRSEKVGIIFQDFHLMASLTARQNVELALPVKMPKPRKRE LTAEWFERVGLADRMNHLPGQLSRGQQQRVAMIRALIRSPKIVLADEPTGSLDRETAEDV MRLLLELTASSNATLLVVTHDLELAAGFRTRTHIGELNEWYTPKEAIRPAGGPGRDRILP GDIAEPSGTSGWKGEKLG >gi|333606252|gb|AFDH01000063.1| GENE 16 13867 - 15150 1217 427 aa, chain + ## HITS:1 COG:DRB0050 KEGG:ns NR:ns ## COG: DRB0050 COG0577 # Protein_GI_number: 10957500 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Deinococcus radiodurans # 5 422 2 398 402 165 32.0 2e-40 MSVFRVIWRNALHRKTLSVLTMLSVALTAALLLFVLMWNEGVEKGAEKGYGPFEITMGAE GSKTQLAMSTYYHIGAPTGNIPNALYEQVKKEAEAEEVFAITTGDNLNGYPIVGVDARYF AVRYGDKQLASGSLYDGLGEAVIGSHAARTLGLNVGDTFKGGHGLVHSAEAAGEHAEEHH EEESGGHADASHEGAQGEHNEHNEHDEHEAFSYKVVGILPPLHSPDDRAVFTTLDYAWAV HGEAAQHDREVTALMVKPKSLLGAQALKNKYDAMTGLQAMYTGKAVADVVNVVDKGTQVV QIVTYLCVLLAALTLLLSLLAAASERRKDVALLRLIGKPGRYVWAALVGEGVFLTAGGLL VGLLLGHSAGAAGSSLLFDFAGIQIDPWSLAPGELLLAGGAVLLGIAASAIPAWQVYRVD PLYLFRS >gi|333606252|gb|AFDH01000063.1| GENE 17 15114 - 15230 64 38 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MDLLLHKGMELLSGLSDSAAAALPQPDQERNRYKGSTR >gi|333606252|gb|AFDH01000063.1| GENE 18 15232 - 15364 128 44 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKYTRTVLTILAAALLTSACGKEEAPKTAAQSFGSASAAQTPAD Prediction of potential genes in microbial genomes Time: Sun Jul 17 09:11:13 2011 Seq name: gi|333606242|gb|AFDH01000064.1| Paenibacillus sp. HGF7 contig00125, whole genome shotgun sequence Length of sequence - 8707 bp Number of predicted genes - 9, with homology - 7 Number of transcription units - 5, operones - 1 average op.length - 5.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 1314 1225 ## Pjdr2_1430 hypothetical protein + Term 1327 - 1367 -0.0 + Prom 1328 - 1387 2.0 2 2 Op 1 16/0.000 + CDS 1572 - 2294 667 ## COG1209 dTDP-glucose pyrophosphorylase 3 2 Op 2 11/0.000 + CDS 2294 - 3310 956 ## COG1088 dTDP-D-glucose 4,6-dehydratase 4 2 Op 3 . + CDS 3307 - 4176 802 ## COG1091 dTDP-4-dehydrorhamnose reductase 5 2 Op 4 1/0.000 + CDS 4169 - 5281 970 ## COG4641 Uncharacterized protein conserved in bacteria 6 2 Op 5 . + CDS 5310 - 6428 1100 ## COG4641 Uncharacterized protein conserved in bacteria - Term 6333 - 6367 0.2 7 3 Tu 1 . - CDS 6540 - 6827 85 ## 8 4 Tu 1 . + CDS 6799 - 6945 123 ## + Term 6947 - 6985 0.0 + Prom 7099 - 7158 6.1 9 5 Tu 1 . + CDS 7307 - 8705 910 ## COG0438 Glycosyltransferase Predicted protein(s) >gi|333606242|gb|AFDH01000064.1| GENE 1 1 - 1314 1225 437 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_1430 NR:ns ## KEGG: Pjdr2_1430 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 3 434 1791 2239 2240 205 36.0 4e-51 EALAYGSVTSKALAYGSVTSKALGSGSVTSKALAYGSVTSKALASGSVTSEALTSGSVTS EALAAGAVTSEALAAGSVTSEALAEGAVTSEGLAAGAVTSKALAAGAVTSEALAYGSVTS EALAEGSVTGEALAHGSVRSETLAEGAVTGEALAKGAVTGDHVQPGTITLAHLHPDALSI RELADQRGAHLAPKSVTEDHLAMGSVASGHLQASSVLSLLIANRAVTGEKLADEAVSSAK LAPSAVGSVHLQADAVDTNHLANGSVTEDKIASDSIGAGHLRSQSVENGHLAEGSVTFNK ISAGAVQPIHLAEASVTEAKLAPESVHAEHLAAGAVEESKLAFRPVQAPSGKKAVLQQFG LTDFRFQEQDDVLEIGISFEEPFANASYVLVATGSHPACYAVCKQKTVKTAVLSIVRTQP GLAFDVVLNWIAVGSKG >gi|333606242|gb|AFDH01000064.1| GENE 2 1572 - 2294 667 240 aa, chain + ## HITS:1 COG:BS_spsI KEGG:ns NR:ns ## COG: BS_spsI COG1209 # Protein_GI_number: 16080835 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-glucose pyrophosphorylase # Organism: Bacillus subtilis # 1 230 1 231 246 268 57.0 8e-72 MKGVILAGGTGSRLRPLTNLMNKHLLPVGKYPMIHYSVMKLKEAGVKEILLVTGKQSAGL YTEYLGSGSQWGVSITYAVQEQAGGIAEALGLAERFIGRDKKFVMLLGDNLFQDSLEPFL RDFESQSEGAMVLLKEVPDPERYGVPVLTDGRIVHIDEKPARPKSSYSVTGIYFYDAEVF HVLKTCRPSKRGELEITDVNNAYALKGRLAYRILSNWWVDAGTHESLYEAIRHMWKEEEG >gi|333606242|gb|AFDH01000064.1| GENE 3 2294 - 3310 956 338 aa, chain + ## HITS:1 COG:MTH1789 KEGG:ns NR:ns ## COG: MTH1789 COG1088 # Protein_GI_number: 15679777 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-D-glucose 4,6-dehydratase # Organism: Methanothermobacter thermautotrophicus # 1 335 1 332 336 432 60.0 1e-121 MAVLLVTGGMGFIGSHFIRFWHNRHPQDSLINLDLLTYAGNPYNLTDLQDSPRYRFIRGD IADAPFLERLMGGTSIDAVVHFAAESHVDRSIREPAAFVQTNVLGTQQLLEAARREGVPK FVHVSTDEVYGTLGTSGVFTEETPLAPNSPYSASKAGSDLLARAYHETYGYPVAVTRCSN NYGPMQFPEKLIPTLIIRALRDLPLPLYGDGEHVRDWLHVGDHCAAIAAVLESGRPGEVY NVGGGSERTNLEVARTVLKALGKPDTLISFAPDRPGHDKRYAIDASKLTGELGWKPAYTF EEGLRSTVDWYVRNGTWWERILSGEYRGHHLLKGGGPA >gi|333606242|gb|AFDH01000064.1| GENE 4 3307 - 4176 802 289 aa, chain + ## HITS:1 COG:MTH1792 KEGG:ns NR:ns ## COG: MTH1792 COG1091 # Protein_GI_number: 15679780 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-4-dehydrorhamnose reductase # Organism: Methanothermobacter thermautotrophicus # 1 276 1 273 280 264 52.0 2e-70 MKILITGAGGQLGSDLVRVLSPRHKLAALTRHELDVGDGAAVDAAVFREQPEIIIHAAAY TDVDGAEREIDRAYRVNSAGTWHMAEAAERIGAKFVYVSTDYVFDGCKGAPYIERDKPNP LSVYGTSKLHGEKFASMLCERHFIVRTSWLYGRGGNNFVAKIVEKARRGAELSLVDDVFG SPTYSHDLAVFIGSLLETEEYGTYHGSNGGVCTRYEFAREIIRVLGMEGVKLRRAKADMF PLPAARPAHSALADTAAGAIGVKPLRPWKEALRHFLLTDLADGREASHA >gi|333606242|gb|AFDH01000064.1| GENE 5 4169 - 5281 970 370 aa, chain + ## HITS:1 COG:BS_cgeB KEGG:ns NR:ns ## COG: BS_cgeB COG4641 # Protein_GI_number: 16079037 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 77 367 30 312 317 132 31.0 2e-30 MRERIKRGRQPVKTPEKARSRGYTRGWEQGCRYGSCQAVLNRLPAPAFGFIEKRVLFVLQ GFEAIDAGIQQGLASLTRELIVCKPEHMLQTAAASRPDMMLVLNGLHVFPEDHLAQADGV RRLGIQTAIWFADDPYFMDLTPAIVPHYDYIFTHERNAVAYYRSLGCERVFHLPLAAAGH IYYPQPAEPSYLSDVCFIGNAFPNRIDFIDALAPALAGRKVVLIGALWDRLKHYKQLRGG IHLGWKPMDEAAKYYNGARIVLNLHRAPLDPVYSKNKIGLPAGSINPRTYEIAACGAFQL TDLRGDLAEFYAPGAEIETFQSPEDCAGKLLYYLRNEERRREIAVRGMMKTRASHSFEAR LSQLLQIVFG >gi|333606242|gb|AFDH01000064.1| GENE 6 5310 - 6428 1100 372 aa, chain + ## HITS:1 COG:BS_cgeB KEGG:ns NR:ns ## COG: BS_cgeB COG4641 # Protein_GI_number: 16079037 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 54 359 2 302 317 147 31.0 4e-35 MAALSKRGRSLAVKQAEGWQNGYTLGAQAGYRLGRCESIMNRISLAPTAFWDKKVLYVTS GKGLPYSPLDTGIIETIRPMVRELVFAQPTHDLALTAAREMPDFVLVLDAMMLPMDQLEL IRNWGIKTAVWLLDDPYYTDVTLKLALSFDYVFTIELNCVSFYTESGCPNVHYLPLAVDS SVYRPKAVAAGNNRGACFVGSGYWNRVQIFNSLTPTLLRHDVHFTGLWWDRLAAYSKLSG RINLNKWMGPEETADYYNGSKIVINLHRAYDDEQFNNNSRGIQAVSPNPRTFEISACGVL QLTDIRNDLSRFYEPGTEIVTYGSAEELRDKLEYYLTHEEEGREIALRGLSRTMREHTFT NRLTDLFRVVFG >gi|333606242|gb|AFDH01000064.1| GENE 7 6540 - 6827 85 95 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVLRLPEADKGRFFLSLFPRAAFALFFLPPVPFRETAPALLLFTAPDPDAFFSLAFRFTD GSDEAAAAVPAVRLFFTDADLAPVFLFMVVLVPSP >gi|333606242|gb|AFDH01000064.1| GENE 8 6799 - 6945 123 48 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSASGRRRTTVDAAYNQAFNEGYDSGFQAGFSQGVADGEHVLAEAAAG >gi|333606242|gb|AFDH01000064.1| GENE 9 7307 - 8705 910 466 aa, chain + ## HITS:1 COG:AGl2541 KEGG:ns NR:ns ## COG: AGl2541 COG0438 # Protein_GI_number: 15891381 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 92 349 110 367 382 80 29.0 6e-15 MVRELKERHDCILVVPGEGVLSREARAAGIYTLVVPFPLVWEVYTPDAGLTGQLDGLPVT EPGALVELLRVLGQYRPDLVISNTCVNVLPPVAAKALGIPVLWMITEKMTDTAFTPVSTE FIHRHADLVAGISEATLAPFGVREAESQIVMYPSWHAETMESGDWSVLRERRRAGSGIGS GEVLAGYIASDIYPLKGLDHFIGAALELCPAYPHVHYLIAGKPTDAAFYRQCRNLTVQSG YGGRFHWTAFEKEVASLYTAMDFVVVPSLTEEGFGMTALEGMMFGKPVIAFDSGGLREIL GHTGNARFLVPKGDTRTLAARMRELVEDPLLRMQTGEANLSAVRSVFGIGAYRSRQEQLL ARLENKLAVRHNDPQPQVPPVLGGVPGPLVIVRGVRPGFYLLRDGIRYPVTEAQRLRLGA GVVRVPEGLLASRPVGAVLSFPDEAAPPPWTGAKPARRKSVHVARK Prediction of potential genes in microbial genomes Time: Sun Jul 17 09:11:41 2011 Seq name: gi|333606200|gb|AFDH01000065.1| Paenibacillus sp. HGF7 contig00043, whole genome shotgun sequence Length of sequence - 31310 bp Number of predicted genes - 40, with homology - 35 Number of transcription units - 19, operones - 7 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 50 - 1036 1123 ## COG0053 Predicted Co/Zn/Cd cation transporters - Prom 1070 - 1129 3.5 2 2 Tu 1 . - CDS 1237 - 1527 328 ## 3 3 Op 1 38/0.000 - CDS 1639 - 2538 1025 ## COG0395 ABC-type sugar transport system, permease component 4 3 Op 2 35/0.000 - CDS 2552 - 3421 706 ## COG1175 ABC-type sugar transport systems, permease components 5 3 Op 3 . - CDS 3418 - 4827 1496 ## COG1653 ABC-type sugar transport system, periplasmic component 6 3 Op 4 . - CDS 4824 - 5774 827 ## COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold - Prom 5955 - 6014 7.4 - Term 5868 - 5913 5.5 7 4 Tu 1 . - CDS 6027 - 7382 1539 ## COG0168 Trk-type K+ transport systems, membrane components - Prom 7412 - 7471 4.0 - Term 7427 - 7467 2.3 8 5 Op 1 . - CDS 7522 - 8070 640 ## Psta_2515 lipolytic protein G-D-S-L family 9 5 Op 2 . - CDS 8141 - 9130 986 ## COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases 10 6 Tu 1 . - CDS 9278 - 9967 464 ## COG2514 Predicted ring-cleavage extradiol dioxygenase - Term 10016 - 10050 -0.9 11 7 Tu 1 . - CDS 10115 - 10609 728 ## Dtox_4297 GCN5-related N-acetyltransferase 12 8 Tu 1 . - CDS 10803 - 10901 80 ## - Prom 10934 - 10993 4.1 - Term 10967 - 11005 5.0 13 9 Op 1 . - CDS 11014 - 11424 477 ## COG0251 Putative translation initiation inhibitor, yjgF family 14 9 Op 2 . - CDS 11491 - 12060 570 ## GYMC10_4449 hypothetical protein 15 9 Op 3 . - CDS 12104 - 12790 662 ## Ilyop_0623 protein of unknown function DUF1361 16 9 Op 4 . - CDS 12836 - 13603 631 ## BCA_3126 zwittermicin A-resistance protein 17 9 Op 5 . - CDS 13672 - 14268 767 ## Fjoh_2482 hypothetical protein 18 9 Op 6 . - CDS 14283 - 14441 181 ## 19 9 Op 7 . - CDS 14508 - 15032 245 ## PROTEIN SUPPORTED gi|52841322|ref|YP_095121.1| nucleotidyltransferase PLUS glutamate rich protein GrpB PLUS ribosomal protein alanine acetyltransferase 20 9 Op 8 . - CDS 15022 - 15438 253 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 21 9 Op 9 . - CDS 15491 - 15820 372 ## COG4323 Predicted membrane protein - Prom 15947 - 16006 2.3 - Term 15945 - 15981 4.2 22 10 Tu 1 . - CDS 16038 - 17669 1827 ## COG1785 Alkaline phosphatase - Prom 17765 - 17824 3.4 + Prom 17749 - 17808 6.9 23 11 Tu 1 . + CDS 17896 - 18735 867 ## COG2207 AraC-type DNA-binding domain-containing proteins + Term 18981 - 19017 4.1 - Term 18882 - 18911 -0.9 24 12 Op 1 . - CDS 18992 - 19978 985 ## COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) 25 12 Op 2 . - CDS 20016 - 20585 652 ## GYMC10_3626 GCN5-related N-acetyltransferase 26 12 Op 3 . - CDS 20624 - 21196 344 ## COG0406 Fructose-2,6-bisphosphatase 27 12 Op 4 . - CDS 21228 - 21626 243 ## Cphy_2528 hypothetical protein - Term 21703 - 21750 -0.7 28 13 Tu 1 . - CDS 21809 - 22210 386 ## BBR47_37570 hypothetical protein 29 14 Op 1 . - CDS 22345 - 22788 354 ## Bcer98_1633 GCN5-related N-acetyltransferase 30 14 Op 2 . - CDS 22801 - 23238 336 ## GYMC10_2532 hypothetical protein 31 15 Op 1 . - CDS 23422 - 23625 247 ## 32 15 Op 2 2/0.500 - CDS 23674 - 24156 501 ## COG0457 FOG: TPR repeat 33 15 Op 3 8/0.000 - CDS 24194 - 24673 303 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 34 15 Op 4 . - CDS 24684 - 25193 546 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 35 15 Op 5 . - CDS 25261 - 26262 640 ## COG2334 Putative homoserine kinase type II (protein kinase fold) - Prom 26361 - 26420 4.2 - Term 26357 - 26400 1.4 36 16 Op 1 . - CDS 26440 - 26895 265 ## BcerKBAB4_5498 hypothetical protein 37 16 Op 2 . - CDS 26981 - 28009 879 ## COG1680 Beta-lactamase class C and other penicillin binding proteins - Prom 28052 - 28111 2.1 38 17 Tu 1 . - CDS 28116 - 28250 93 ## - Prom 28288 - 28347 6.1 - Term 28331 - 28372 9.1 39 18 Tu 1 . - CDS 28452 - 28625 173 ## gi|299536479|ref|ZP_07049791.1| hypothetical protein BFZC1_10682 - Prom 28725 - 28784 5.7 - Term 28767 - 28798 2.5 40 19 Tu 1 . - CDS 28826 - 29119 152 ## Shew_2289 glycosy hydrolase family protein - Prom 29208 - 29267 3.0 Predicted protein(s) >gi|333606200|gb|AFDH01000065.1| GENE 1 50 - 1036 1123 328 aa, chain - ## HITS:1 COG:lin1805 KEGG:ns NR:ns ## COG: lin1805 COG0053 # Protein_GI_number: 16800873 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted Co/Zn/Cd cation transporters # Organism: Listeria innocua # 11 322 5 315 321 245 44.0 1e-64 MDPDAERTNWLELIKKGNMSSATAALGNTIIAIVKGVAASLTGSGAMFASTMHSIADAVN QMFVFTGSVLAEKKATRRFPTGFGRVINIFCMIAVLVVTFMAYETIREGLHLLQHPAESH GFWLNLSVLILSIVIDGYVLYKAMKEVIKESRAEASGFGIVKASFKHVKRAAPPTRLVFY EDLVATTGALLALIAVVVTSLTNFSALDGLMTILIGLLMIFVAFRVGYDNMVGLIGVSAP PDVEDKVSGIIFSETLVTDIYQLRVLQEGRYYHVEGLIELKPGLTLAEADDIKFRVRDKL LGDPDIADVTLGILEDNGVKDWVPTANR >gi|333606200|gb|AFDH01000065.1| GENE 2 1237 - 1527 328 96 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNRQTESGKQTDTPAKAGPGAEGLTDTRGGEIRQSSFEDVTTGGKSADDTIPLKIFEDVS AHERIGLRADDSAADGEVDLDPSGAIQSKERQNVWS >gi|333606200|gb|AFDH01000065.1| GENE 3 1639 - 2538 1025 299 aa, chain - ## HITS:1 COG:AGl460 KEGG:ns NR:ns ## COG: AGl460 COG0395 # Protein_GI_number: 15890338 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 29 299 11 279 280 255 51.0 6e-68 MSKYDWAAEHAGLRRRGSEQAVKRTARYRIRASAFSAYFLLGAGAIVMLFPFLWMIATTL KTPQDVFSLSLIPPEATLGNVRTLFAETLYATWIVNSLIVAVITTVSVCFFDTVVGYILA KFTFPGKTVIFVGILSTLMVPTEMLIIPWYLLAAKLELVDTYLGVLFPGLISAFGIFLMK QFMESVPRDLLDAARIDGMGEWGILLRVVVPLVKPALATLCILTFLGSWNAFIWPLIVTQ TPEHLTIPVGLAFFSSESGDSGSWTLIMAGAAISILPLLAVFLLFQKQIIRGIAMTGFK >gi|333606200|gb|AFDH01000065.1| GENE 4 2552 - 3421 706 289 aa, chain - ## HITS:1 COG:AGl458 KEGG:ns NR:ns ## COG: AGl458 COG1175 # Protein_GI_number: 15890337 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 1 286 24 312 313 219 42.0 3e-57 MKRQRLFFVYACLLVPLLFFIGVRIVPIVYSFLVGFREWDLLSEEKPFVGFSNYLALYHD PVFLISLRNTAVYVLIGVPGQLAAGLAVALLLRRIIRFRAFFRTVYFLPYVTSVVAVSWV FRWIFMKNGIVNGLLLKLGLPSQLFLGSPDQAIFIVTAAMIWQNLGFQMLIFLTGLENIP KEYEEAAAIDGAGVWQRFVHVTLPLLNPVLLFSVIIASISYLQSFTQILNMTSGGGPLNS TKSVVVYIYELAFKQFNMGQATAATVVLFLLILLLSLLQLKTLNRKVEY >gi|333606200|gb|AFDH01000065.1| GENE 5 3418 - 4827 1496 469 aa, chain - ## HITS:1 COG:AGl456 KEGG:ns NR:ns ## COG: AGl456 COG1653 # Protein_GI_number: 15890336 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 70 460 27 417 421 295 39.0 2e-79 MSSKLAKDNRNTEKRQKGKAQPALFRLAALTLAAALSAGLMAGCSGSRSVSGDGAKDASG QQSGDAGKDEKVTIEYWQYQYPVKVDLINSLIKEFEKTHPNITVKQTNFPYDQYNEKVAT LIPAGKGPDVINLYYGWLPKYTASGYLQPLPKESFPDSKIKEEFFPFVEAAQIGGSYYAI PTAVRTLGLYYNKDLFAKAGLDPAKPPATWEELVDYSKKLTEKDAKGEFVVEGMAWQPNS QLHHWYRDALVYQAGGKDISEDRKRVLWNETPAGLEAFKYLLDFATVHKVGTKDFYNDDI TAFKGGHAAMNIDGSFQLGGLKKDAPNLNFAVAPLPAYKGKATQASFWANGITKNAKGKK LEAATEFLKFLTSKEVQEQWVEKVGELPASKAVALQDKYAKDEKIGPFIRQLGDANAHFF VDEKLERDYFVQAADSVVLNKVPAEKAFEELVAKTQKLYDDYWAKQAKK >gi|333606200|gb|AFDH01000065.1| GENE 6 4824 - 5774 827 316 aa, chain - ## HITS:1 COG:Cgl0287 KEGG:ns NR:ns ## COG: Cgl0287 COG2159 # Protein_GI_number: 19551537 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase of the TIM-barrel fold # Organism: Corynebacterium glutamicum # 109 261 116 262 314 66 30.0 7e-11 MFKDGFKVFDIHGHLPYAQQFVKHDEVIDGAQAKRGERMRLTWDFPSGPDNGPGAGRPVI DRWADELDKYGIGGLNFLTAKGNDDLKEQISKYPGKFTGFAHHSIEAPDAVEELQRAVDE LGLRGYKLFGPLIQTSLDDPSLRPVWSFLAERKLPVLIHFGLLGHTGGIVQHRNINPLAI FNVAREFTDIPILIPHFGAGYYQELLHLCWGCPNVIVDTSGSNQWMRWTPYDLTLETLFR KTVELIGPERVVYGSDSSGFPRGYVYRYLQDQVRVCRELRFNETDIQSIFGNNARRLLRL PETAASVQEHKGVEVL >gi|333606200|gb|AFDH01000065.1| GENE 7 6027 - 7382 1539 451 aa, chain - ## HITS:1 COG:BS_yubG KEGG:ns NR:ns ## COG: BS_yubG COG0168 # Protein_GI_number: 16080162 # Func_class: P Inorganic ion transport and metabolism # Function: Trk-type K+ transport systems, membrane components # Organism: Bacillus subtilis # 9 451 12 445 445 336 43.0 7e-92 MGKKRRILIRFTPPQILALGILAIILIGSVLLSLPAASSTGEPISYLDAFFMSTSAACVT GLSVLNAGVHFSLFGQIVILMLVQVGGLGFMTMATLIALVLRKRITLKERLLLQEAMNQG SVEGIVRLIRKVLTYALAIELAGAVLLTVRWAFDMPLGQAVYFGVFHSISIFNNAGFDLF SSLPGAQGSLMAYVNDPYVNIVVIGLMVLGGIGFIVIADLLDFKRTRKLTLHSKVVLTAT GLLILLGSVVVFIFEYTNPLTMQPLSLPGKIFAAFFQSATTRSTGVNTLDIESFRQATQF FVIILMFIGAAPGSAGGGIKITTFAILIGAVITMVRGKEDIVFFRKRLPEERIYKATTLT LMSLILVVTGTMILSVLQDGPFIKILFEVTSAFGTAGISLGLTPELTSPSKVLMAILMFV GRLGPLTLAYALTPKGTKELYRYPEGKITIG >gi|333606200|gb|AFDH01000065.1| GENE 8 7522 - 8070 640 182 aa, chain - ## HITS:1 COG:no KEGG:Psta_2515 NR:ns ## KEGG: Psta_2515 # Name: not_defined # Def: lipolytic protein G-D-S-L family # Organism: P.staleyi # Pathway: Biosynthesis of unsaturated fatty acids [PATH:psl01040] # 1 180 51 231 245 97 35.0 3e-19 MKKVLLLGDSIRIGYQPLVRAALEGKAEVVGPEENGRFAKHTLWGANLWIRDLGTPDIIH WNNGLWDLHHEAPMVEALTSLDEYIVTLGRILNELRRTGAAVIFATTTPVPVDAVGRSNA EIDAYNAAAAKLMKQHGVEINDLNAVVKRDLQNFICEDKLHLSEAGNRACADRVIEAVRK YI >gi|333606200|gb|AFDH01000065.1| GENE 9 8141 - 9130 986 329 aa, chain - ## HITS:1 COG:BH1466 KEGG:ns NR:ns ## COG: BH1466 COG0604 # Protein_GI_number: 15614029 # Func_class: C Energy production and conversion; R General function prediction only # Function: NADPH:quinone reductase and related Zn-dependent oxidoreductases # Organism: Bacillus halodurans # 72 328 1 260 260 233 49.0 3e-61 MPNKSVYYDRFGPPAEVLEIRRTPVVPPGPGEIRVRMLARPINPSDLIPVRGAYAHRIAL PAVPGYEGVGIVEETGLSVPPELLGRRVLPLRGEGTWQESVLAPAGLAIPVPPDIPDETA AQLYINPVTAWAVCGALRLKYGDTLVVNAGGSAIGRVFAQLAAVFNYELIAVTRSAAHTE ELLRLGAAHVIDTAGTPLREAVLSKTGGLGATAAVDSIGGPDGAALAGCVRPGGTVFSIG LLSGVPADWAAMSRLYRVDARPFWLRHWIRHASAADWIGTFEEIMELVRDGRLSLMKIAA GYGLDEVHAAVAAFESGMPGKILLTGGHG >gi|333606200|gb|AFDH01000065.1| GENE 10 9278 - 9967 464 229 aa, chain - ## HITS:1 COG:BH2142 KEGG:ns NR:ns ## COG: BH2142 COG2514 # Protein_GI_number: 15614705 # Func_class: R General function prediction only # Function: Predicted ring-cleavage extradiol dioxygenase # Organism: Bacillus halodurans # 1 203 1 203 212 158 43.0 1e-38 MKILDLTLRASNLTGLKEFYGERLRLPVTGDTETSFSFRAGNTNVTFVRSAPDSDSFYHF AFNIPENKIEEAAGWLRDRVELLGQEEDPVVHFESWNAHAVYFKDPAGNIVELIARHNLE NASRKPFGEEDFLCVSEIGMPVDDVSATLRDLKRKAGLEAWKTPSDTFAPVGDENGLFIV VKKGRVWFAGERSSHPHSLAVRTDGCRVRLDGEEGISFGEPGESVPDKP >gi|333606200|gb|AFDH01000065.1| GENE 11 10115 - 10609 728 164 aa, chain - ## HITS:1 COG:no KEGG:Dtox_4297 NR:ns ## KEGG: Dtox_4297 # Name: not_defined # Def: GCN5-related N-acetyltransferase # Organism: D.acetoxidans # Pathway: not_defined # 1 159 1 161 171 208 62.0 6e-53 MIRICTEQDIRDIYDIINDAAVAYKGIIPADRFHEPYMTMEELQSEIGGGVVFWGYEDGG RLIGVMGIQDKGDVSLIRHAYVRTDQRKGGIGSRLLAYLTNLTEKPFLIGTWADASWAIA FYLKNGFSLVPEAEKERLLRTYWTIPDRQIETSVVLGDRRREAV >gi|333606200|gb|AFDH01000065.1| GENE 12 10803 - 10901 80 32 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNAFLKLNGISALWHESAEKKLTRREAENDVP >gi|333606200|gb|AFDH01000065.1| GENE 13 11014 - 11424 477 136 aa, chain - ## HITS:1 COG:DR0033 KEGG:ns NR:ns ## COG: DR0033 COG0251 # Protein_GI_number: 15805074 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation initiation inhibitor, yjgF family # Organism: Deinococcus radiodurans # 4 127 30 153 157 166 69.0 1e-41 MTKRKNISSGSPWEPVVGYSRAVRVGNIVEVAGTTAMKDGAVVGIGDAYAQTKFALGIIE EALNRAGAKLADVVRTRMFVTDIGRWEEIGKAHGEFFKDIRPASTMVEVRALIDPELLVE IEVQAIVKETSSGFGD >gi|333606200|gb|AFDH01000065.1| GENE 14 11491 - 12060 570 189 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_4449 NR:ns ## KEGG: GYMC10_4449 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 12 188 12 189 190 187 51.0 1e-46 MLFSKKDPADPRTDFERDLLRQARRLIPGEPPPPWRLQTVIAAAGVTAGGWDGDGRIVLI GSGYSITDAFSGQRLVRERDEAKTERHLAGCGLKFTVPETGEEIGVFGLDGGDGIQMNAE GWRLEVIYPWWPRASVILENVFSRGYRYLAGAVMLEIPRLDGWQKGGFSPSGEAFMVLGS GGAAVFAKR >gi|333606200|gb|AFDH01000065.1| GENE 15 12104 - 12790 662 228 aa, chain - ## HITS:1 COG:no KEGG:Ilyop_0623 NR:ns ## KEGG: Ilyop_0623 # Name: not_defined # Def: protein of unknown function DUF1361 # Organism: I.polytropus # Pathway: not_defined # 19 215 29 218 229 107 32.0 5e-22 MVHLSAWKSAAFLAALSALTLLVYSVFRNKTYYDFLTWNLFLAWVPFVFSFIAYETGRRV QSGMRAAIIVVLGGGWLLFYPNAPYIVTDLVHLTAMKGLYASAQGTFAFRYWYDLLVLVL FAWNGLLLCVYSLYQVHSLIRLAAGSLLAWGFVAATALLGGYGVLLGRVHRLNSWDVLTD VSLIKQIAMESLHAPAMLFSLLFGLMIGIVYVSFYFVVHQAGRAAARA >gi|333606200|gb|AFDH01000065.1| GENE 16 12836 - 13603 631 255 aa, chain - ## HITS:1 COG:no KEGG:BCA_3126 NR:ns ## KEGG: BCA_3126 # Name: not_defined # Def: zwittermicin A-resistance protein # Organism: B.cereus_03BB102 # Pathway: not_defined # 3 254 4 254 257 142 31.0 2e-32 MTKVNAAIRPHLTKLFEEVRRVDVCIDSVLEGQAAGDIRIFVDSLTNPSSAQINQGSFAY FAGDSAGPSAEQWLEELPAHCYIMPSSPGWVQRARSIHGGKLIRGERYMFSPASLRPGSL KELAEHPDYIVEKITPELARDMFRDPLQHYHFVNYDTAEQFMETGFGYCIRAEGEVAAAC TTAMVCRTGVEIGIMTHPDYRKFGLATRVAAAFLLHCLEHNLYPSWDAANLKSKGLAEKL GLIYAGSYEVFSLQD >gi|333606200|gb|AFDH01000065.1| GENE 17 13672 - 14268 767 198 aa, chain - ## HITS:1 COG:no KEGG:Fjoh_2482 NR:ns ## KEGG: Fjoh_2482 # Name: not_defined # Def: hypothetical protein # Organism: F.johnsoniae # Pathway: not_defined # 1 190 1 190 191 273 72.0 2e-72 MSANQTYLESARKQFLYYKTLGEKAMNQLEPEQLFTAYNEDTNSIATIVAHLGGNMLSRW TDFLTTDGEKDWRDRDAEFGHGLSDKEQLLDKWNEGWNCLFHALDSLSPGQLEQIIYIRN EGHTVIEAINRQLAHYPYHVGQIVYAAKLLKKEEWNSLSIPRNKSAQFNSEKFAKQKSVQ NFTDEEMKRLSANTDSMQ >gi|333606200|gb|AFDH01000065.1| GENE 18 14283 - 14441 181 52 aa, chain - ## HITS:0 COG:no KEGG:no NR:no METFGRGCLYIILGIVVLMVFALLAGGTVTIPWIIAIPLVVLAFWTASKKNK >gi|333606200|gb|AFDH01000065.1| GENE 19 14508 - 15032 245 174 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|52841322|ref|YP_095121.1| nucleotidyltransferase PLUS glutamate rich protein GrpB PLUS ribosomal protein alanine acetyltransferase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] # 2 171 169 342 601 99 35 3e-20 MVNKTKEVRIVPYDPAWKTAFESIRAELEQHIGDLVIAIEHVGSTSVEGLGAKPIIDIDV VMDSYEVFPAIAERLGKAGFRHEGNLGVEGREAFKRTYEDGFMAYHLYVCPKDGRGYLEH IAFRDYLRAHPAARERYQRLKEDLAAEFRYDRDTYCEKKTGFVRDILNKTLYKE >gi|333606200|gb|AFDH01000065.1| GENE 20 15022 - 15438 253 138 aa, chain - ## HITS:1 COG:MA0918 KEGG:ns NR:ns ## COG: MA0918 COG0454 # Protein_GI_number: 20089796 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Methanosarcina acetivorans str.C2A # 4 131 10 141 146 92 33.0 2e-19 MNIVYSDEIPSGEAIYDLYEQFGWNEFLKLSARQLHDTMRGSWYVASAYDGGRLIGTGRV VSDGVMTAFLCGLAVHPDYQKKGIGSELMKRLIQRCITRQLHMELFCSDPKIGYYERFGF EVFASGMKYRKEGHPCGE >gi|333606200|gb|AFDH01000065.1| GENE 21 15491 - 15820 372 109 aa, chain - ## HITS:1 COG:CC3163 KEGG:ns NR:ns ## COG: CC3163 COG4323 # Protein_GI_number: 16127393 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Caulobacter vibrioides # 13 87 123 199 208 60 40.0 1e-09 MNLGRIRRDMKNYLEEHRNPVNRTLHYFAFLAAFLAWIFLWIDIRIALALAVLHYALAWT GHFYFEGNKPASFRYPLIGFYAGFLWFFLRTAEVVTRTDLVDAWVSKSE >gi|333606200|gb|AFDH01000065.1| GENE 22 16038 - 17669 1827 543 aa, chain - ## HITS:1 COG:MA4354 KEGG:ns NR:ns ## COG: MA4354 COG1785 # Protein_GI_number: 20093141 # Func_class: P Inorganic ion transport and metabolism # Function: Alkaline phosphatase # Organism: Methanosarcina acetivorans str.C2A # 5 542 19 563 585 290 36.0 4e-78 MAKNMLGMLLTSALLCGSLGTGTGHAQSGRALPAEKKEVKNVILFITDGMSLSDVNLTRW VQGGKPLEMDAYFKGLVRTYASDSLTTDSAAGASAYATGHKVKSETVSISPDKVTMPFID KPREREAAKPLPTLLEGARLKGKGTGLVFTCELTDATPAVFASHAESRDNAHSIAEQMVY SGVDLVLGGGSGYLVPGDKEINRKDGEDLTNVLKANGYEYATSRIDLLSSQTNKIWGLFN EGALDADLDLDPQKQPTLAEMTTIAANKLSSNENGFFLMVEASQIDWFGHDNDPVGIVTE TQAFDRALKAAIDFAKKDGNTAVISVSDHATGGLNMTNYDTMKDLQPIFTKAKHTSYGLE GRINESNYKKMLEEEYGLSDLTKEEEEAVKKGLKDNLSPVIGGILGERAGVSFSTGDHTS EEVGLFAYHPNDFLPTDYAGSGVVENTDVGKYLQLILGLDLPALENKLFLPASDLEAKGA KVTVDKSDKENPVVVVTKGTKTIKLPVDKNIALTDGKTIKLSTPTLLIKNKVWVSRDAAA LIQ >gi|333606200|gb|AFDH01000065.1| GENE 23 17896 - 18735 867 279 aa, chain + ## HITS:1 COG:BH1906 KEGG:ns NR:ns ## COG: BH1906 COG2207 # Protein_GI_number: 15614469 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Bacillus halodurans # 27 276 36 287 299 96 28.0 5e-20 MKNVCYDCGSLHISRKELAYTSMPSRHTHDAFEIMYLVSGQLYYFIGDKTYQVVGGVLLF INANVPHQLVNAGEAVFERVTLLFKEEFLHDFFRLKDGGDLLSFFSADFHAVNLSGYEQT FTEELFHKMLHEGVRKQIGFEQYQKVLLMELLLFMNRKVREADREQAGSGALPTHKKIYA LVEYINSRFYERLTLEDLSQTFEISPSHLSRTFKEVTGYTAIEYINTVRIKKACALLRET SWKVLEICERVGFDSLTHFGRTFKQMTGCSPVRYRRRQP >gi|333606200|gb|AFDH01000065.1| GENE 24 18992 - 19978 985 328 aa, chain - ## HITS:1 COG:DR2261 KEGG:ns NR:ns ## COG: DR2261 COG0667 # Protein_GI_number: 15807252 # Func_class: C Energy production and conversion # Function: Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) # Organism: Deinococcus radiodurans # 11 327 12 326 327 403 64.0 1e-112 MDQRKLGSGGLTVSAIGLGCMGMSDFYSGRDEAESVRTIHRALELGVTFLDTADMYGVGR NEELLGQALKDRRSEAVIATKFGNMRSPDGAFLGVSGRPEYVREACDASLRRLGTDYIDL YYQHRVDPGTPIEETVGAMAELVRAGKVRYIGLSEAAPATIRRAHAVHPVTALQTEYSLW SRDVEDEILPVVRELGIGFVPYSPLGRGFLTGQIRTFEDLAEDDYRRYSPRFQGDNFRRN LDLVKRIEEIAREKGCRPSQLALAWLLAQGEDIVPIPGTKRAVYLEENVQALAVGLTAEE AARIDEAAPKGAASGARYPEASMKSVNL >gi|333606200|gb|AFDH01000065.1| GENE 25 20016 - 20585 652 189 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_3626 NR:ns ## KEGG: GYMC10_3626 # Name: not_defined # Def: GCN5-related N-acetyltransferase # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 168 1 168 170 207 57.0 2e-52 MNILVKPLDSEELKVIWMQAFRKHGLHREVAYYDQCLHENVLGTRVTLLAFVEETLVGCG HLKVESEYAYFRDRRIPEINDLNVFPDYRRSGIGTKLLEQFEALASEDFHRIGLGVGLYK DYGAAQRIYCRRGYVPDGNGLMSGNREAAAGEMVRVDDDLLLYLVKDLRLDSFYNLHAGK AEIQPFLNH >gi|333606200|gb|AFDH01000065.1| GENE 26 20624 - 21196 344 190 aa, chain - ## HITS:1 COG:DR1393 KEGG:ns NR:ns ## COG: DR1393 COG0406 # Protein_GI_number: 15806410 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Deinococcus radiodurans # 2 190 19 221 237 87 33.0 1e-17 MTTIGFIRHGSTHWNKEGRAQGSSDIPLDEDGLADAEKLAERIGSEKWDYVYSSHLLRAK QTADRIGGRAGIPVWSDERIREAGGGEIEGTTEQERIAKWGAGWRELDLGIEKPESVITR GRSFLDEVLSRHKGKRILIVSHGSFIRTMLKHLLPDSEYDGHLTNTSVTTLVLDDRDWTC GLYNCTKHLE >gi|333606200|gb|AFDH01000065.1| GENE 27 21228 - 21626 243 132 aa, chain - ## HITS:1 COG:no KEGG:Cphy_2528 NR:ns ## KEGG: Cphy_2528 # Name: not_defined # Def: hypothetical protein # Organism: C.phytofermentans # Pathway: not_defined # 5 132 4 130 132 90 38.0 2e-17 MYSIKSPGGSLFPYYYKGGEIHCLKYGSFFQDEAGLFKLMLEEEQFIGQRSQKLRIWVDF YETRLSDDVIAAFVDHIGRLNAHIYKLTLVGCSFGSKLKLKKRLNRLDPPLKRPVSFFSD PEVAKTWLVREG >gi|333606200|gb|AFDH01000065.1| GENE 28 21809 - 22210 386 133 aa, chain - ## HITS:1 COG:no KEGG:BBR47_37570 NR:ns ## KEGG: BBR47_37570 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 3 130 43 170 171 157 58.0 1e-37 MQSLTEETGDRKYSPGKWSIKEVLGHVADTERIMAYRMLCIARGDRTPLPGYDENEYMAG ASFAASGLSDILKDYSAVRCSTLTLLRGIMEEAWLRTGTANNGLISARALAAIIAGHERH HIHIIQERYLSIV >gi|333606200|gb|AFDH01000065.1| GENE 29 22345 - 22788 354 147 aa, chain - ## HITS:1 COG:no KEGG:Bcer98_1633 NR:ns ## KEGG: Bcer98_1633 # Name: not_defined # Def: GCN5-related N-acetyltransferase # Organism: B.cereus_NVH # Pathway: not_defined # 1 143 1 143 143 177 58.0 1e-43 MAYIIREAEERDCLALSGLMSQLSGGEVTGADMANRLEFVAISPFDSLYVYEQNSRVRAA LGFRIRENLEEVSRYGEISVIVVDEEERGRGIGRILMNYAEQLAIRHECKGSWLVSGVKR DKAHSFYKESGYEVNGYRFVKHLTGPE >gi|333606200|gb|AFDH01000065.1| GENE 30 22801 - 23238 336 145 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_2532 NR:ns ## KEGG: GYMC10_2532 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 8 141 11 143 143 101 42.0 9e-21 MLTALTIVFVLVLVTGLVLAMVFRKKQAVFVGIIIGIFLINTPVFFGMVALMDQVLRQEI KTVIMARGGEVQEIREISMDDSDKTPFAAEAGKYNKLYRVTYLKNDLTWTAWYRGVNTMN DIHNQSPAGNGMGFGEKWIFEDGGL >gi|333606200|gb|AFDH01000065.1| GENE 31 23422 - 23625 247 67 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTNNVINTVLVVVLAVVSFFTGEVVTFIMLGFILMSLITITAYLRKIYETLNRMASEKDR PPGPPGQ >gi|333606200|gb|AFDH01000065.1| GENE 32 23674 - 24156 501 160 aa, chain - ## HITS:1 COG:BH0479 KEGG:ns NR:ns ## COG: BH0479 COG0457 # Protein_GI_number: 15613042 # Func_class: R General function prediction only # Function: FOG: TPR repeat # Organism: Bacillus halodurans # 4 160 7 163 164 153 48.0 2e-37 MTKLEEAIRLREAGRHAEAQTLLLGLVREEPLVPSNWYQCAWIHDAMGLEKEAAPFYAKA LELGLADEERRGAWLGLGSTYRTLGEYESARTCFRQAIREYPEAREFQVFYAMTLYNLGE HAQAMELMLRQLGETSGDEGIASYKKAILFYADKLDRVWK >gi|333606200|gb|AFDH01000065.1| GENE 33 24194 - 24673 303 159 aa, chain - ## HITS:1 COG:L27646 KEGG:ns NR:ns ## COG: L27646 COG0454 # Protein_GI_number: 15672209 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Lactococcus lactis # 17 152 3 139 141 68 32.0 5e-12 MTEYDAFVTNSGDVVYRQAVVSDAPGMARLSAQLGYPAGENRLAERLGHILALPDHVILT AEYDGEVIGWIHAHARCLLESEPFAEIAGLIVDRKFRGQGIGRSLVKRCGEWTSSAALGR LRVRMNVNRQDTVSFYEQMGFEPVKTQRVFDKSIRPRLK >gi|333606200|gb|AFDH01000065.1| GENE 34 24684 - 25193 546 169 aa, chain - ## HITS:1 COG:AGc420 KEGG:ns NR:ns ## COG: AGc420 COG0454 # Protein_GI_number: 15887596 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 6 169 3 171 172 122 42.0 3e-28 MTHGVTIHELESMEAGVLNDLTELLIRVVEDGASIGFLPPLSWDDANTYWKKVIEPGVLA WNAVCDGKIVGTVQLHLAMKRNAAHRAEVVKLMVHPEYRRKGVAHMLMQALEKTAAEEGR SLLVLDTREGDASNKLYKSFGYVEAGRIPHFAKSSDGSLHTTIFYYKLI >gi|333606200|gb|AFDH01000065.1| GENE 35 25261 - 26262 640 333 aa, chain - ## HITS:1 COG:mlr6716 KEGG:ns NR:ns ## COG: mlr6716 COG2334 # Protein_GI_number: 13475602 # Func_class: R General function prediction only # Function: Putative homoserine kinase type II (protein kinase fold) # Organism: Mesorhizobium loti # 20 250 34 252 335 74 28.0 3e-13 MNEKVPLSAILAAYPVREPSVRFIRHNENMTYRVTDGTTGQSYLLRIHKPVTDKLHGLQH SREGLHAEMQWLADLGAATGMRVQKPVASHAGEWVTSVNLGAESGAQSGVFCTLLEWIEG RDVGHGESFSREMVEGLGRQLGIMHRFSQTYAGAAELRRPRYAGVEQNEEMLARIRSGLS MDLFREEDLEIVGRTFTRIADKLERHSRSGSSWGLIHADINKGNLIVTEQGFSLIDFCLF GHGYYGYDLAGCALTMKTELRDSLLEGYSLVRPGAVTERLDLLEGFMLLSIFGFYSFHLH NPDKHPWMKERMPAFCKNYCVPFLEDRSLFYTL >gi|333606200|gb|AFDH01000065.1| GENE 36 26440 - 26895 265 151 aa, chain - ## HITS:1 COG:no KEGG:BcerKBAB4_5498 NR:ns ## KEGG: BcerKBAB4_5498 # Name: not_defined # Def: hypothetical protein # Organism: B.weihenstephanensis # Pathway: not_defined # 48 151 21 130 130 101 63.0 8e-21 MGFFFPQGSFTQPQGSQGTQDGQRSFGTMGPFFPSPGGGPGQGPFFPFPGQQGPGTPPPG PPGFPGGSPGQQAPTAPPPQFEPQVAPFAVDPGGIVGCLFRNTFIWLNDGTRFWYFPTFV GRTSVAGFRWTGFSWVYFGIDLRRISSYTCF >gi|333606200|gb|AFDH01000065.1| GENE 37 26981 - 28009 879 342 aa, chain - ## HITS:1 COG:PA4347 KEGG:ns NR:ns ## COG: PA4347 COG1680 # Protein_GI_number: 15599543 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Pseudomonas aeruginosa # 35 302 79 356 384 59 26.0 9e-09 MDNEQSLELRRRDAFSPLNQYVLEVKEKIEASAAAVYILHSGTVVNEWYSGTHGFSPGSR AVGADSRFNVASVRKTYLGFAVSLAIYEGRIGGLDDPVSDYMADPDGALLAGTTIRHLLT HTHGLASPQKRIFPPGADWAYNNVGVNLLIRMIGEVFGKPLAQLLNEKVFRPGGFTETGW RKHKTDGLVWLNEAYSSDEGTDINMFVSARELAFWGQLHLSKGMWNEMQLVPRPVWEQTA EIISPEGLGEALPRNGFFWFVQDRPRSLTELGQELPVGSYQSLGSTGCACLVIPEKEAVA VRMYNQTGPNPGGYNYLDDIRTFGNTVYDCLNGIGLQADRSP >gi|333606200|gb|AFDH01000065.1| GENE 38 28116 - 28250 93 44 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MYNYPFMDWEFLGKYHKSAWNFVKTFLDSLKSLKWRASSIIARV >gi|333606200|gb|AFDH01000065.1| GENE 39 28452 - 28625 173 57 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|299536479|ref|ZP_07049791.1| ## NR: gi|299536479|ref|ZP_07049791.1| hypothetical protein BFZC1_10682 [Lysinibacillus fusiformis ZC1] hypothetical protein BFZC1_10682 [Lysinibacillus fusiformis ZC1] # 4 54 1 52 202 66 63.0 6e-10 MRTLKNGYFIVAIVVVMATSASAYAHPGRLDKNGGHNCSAKSKQKGLCSGYHYHKKK >gi|333606200|gb|AFDH01000065.1| GENE 40 28826 - 29119 152 97 aa, chain - ## HITS:1 COG:no KEGG:Shew_2289 NR:ns ## KEGG: Shew_2289 # Name: not_defined # Def: glycosy hydrolase family protein # Organism: S.loihica # Pathway: not_defined # 1 97 831 927 1069 103 49.0 2e-21 MGTHANSEIVYKLDGKYTSFAALVGVDSEVGSVAAVEFQVLVDNQVVFSSGKMNKTTEAK EVNVNLSGKNELKLKVTDGGDGIDSDHADWVNARLIK Prediction of potential genes in microbial genomes Time: Sun Jul 17 09:13:14 2011 Seq name: gi|333606120|gb|AFDH01000066.1| Paenibacillus sp. HGF7 contig00167, whole genome shotgun sequence Length of sequence - 75221 bp Number of predicted genes - 86, with homology - 42 Number of transcription units - 61, operones - 14 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 545 51 ## BATR1942_07685 hypothetical protein - Prom 671 - 730 6.1 - Term 703 - 770 10.0 2 2 Tu 1 . - CDS 968 - 1066 68 ## - Prom 1097 - 1156 6.9 3 3 Tu 1 . - CDS 1586 - 1903 81 ## - Prom 1976 - 2035 2.2 4 4 Tu 1 . - CDS 2055 - 2516 -79 ## - Prom 2603 - 2662 8.0 5 5 Op 1 . - CDS 2784 - 3203 164 ## PPSC2_p0562 hypothetical protein 6 5 Op 2 . - CDS 3243 - 3710 -115 ## 7 5 Op 3 . - CDS 3738 - 3983 90 ## 8 5 Op 4 . - CDS 4016 - 4351 144 ## 9 5 Op 5 . - CDS 4419 - 4640 102 ## - Prom 4672 - 4731 2.7 + Prom 4660 - 4719 3.8 10 6 Tu 1 . + CDS 4939 - 5022 96 ## + Term 5182 - 5217 1.3 11 7 Tu 1 . - CDS 5927 - 6025 115 ## - Term 6452 - 6483 0.2 12 8 Op 1 . - CDS 6599 - 6718 66 ## 13 8 Op 2 . - CDS 6726 - 6923 231 ## 14 8 Op 3 . - CDS 6952 - 7479 194 ## COG1396 Predicted transcriptional regulators - Prom 7713 - 7772 8.5 15 9 Op 1 . - CDS 7786 - 7956 80 ## 16 9 Op 2 . - CDS 7976 - 8251 135 ## - Prom 8366 - 8425 8.3 + Prom 8281 - 8340 8.7 17 10 Tu 1 . + CDS 8444 - 8923 71 ## gi|229113392|ref|ZP_04242845.1| hypothetical protein bcere0018_55650 + Term 8936 - 8971 4.4 18 11 Tu 1 . - CDS 9054 - 9149 134 ## - Prom 9257 - 9316 4.1 + Prom 9009 - 9068 6.2 19 12 Tu 1 . + CDS 9291 - 9386 81 ## - Term 9369 - 9407 6.2 20 13 Op 1 . - CDS 9465 - 9644 182 ## - Prom 9680 - 9739 2.6 21 13 Op 2 . - CDS 9774 - 10166 162 ## - Prom 10230 - 10289 3.5 22 14 Op 1 . - CDS 10334 - 10558 157 ## 23 14 Op 2 . - CDS 10579 - 10758 169 ## 24 15 Op 1 . - CDS 11237 - 11659 190 ## 25 15 Op 2 . - CDS 11695 - 12219 -85 ## EAT1b_2140 hypothetical protein 26 15 Op 3 . - CDS 12255 - 12524 110 ## - Prom 12549 - 12608 3.7 27 16 Tu 1 . - CDS 12706 - 12837 68 ## - Prom 13023 - 13082 6.6 - Term 12927 - 12966 7.3 28 17 Tu 1 . - CDS 13168 - 13452 93 ## COG2337 Growth inhibitor - Prom 13503 - 13562 8.9 + Prom 13462 - 13521 8.3 29 18 Tu 1 . + CDS 13680 - 14156 17 ## Aaci_0431 transcription factor, RsfA family + Term 14249 - 14296 7.2 - Term 14140 - 14178 -0.4 30 19 Tu 1 . - CDS 14382 - 14921 -130 ## COG1793 ATP-dependent DNA ligase - Prom 15019 - 15078 3.5 31 20 Op 1 . - CDS 15109 - 15261 203 ## 32 20 Op 2 . - CDS 15303 - 15782 147 ## 33 20 Op 3 . - CDS 15829 - 16038 81 ## - Prom 16140 - 16199 4.0 34 21 Tu 1 . - CDS 16597 - 16878 122 ## - Prom 16965 - 17024 12.2 35 22 Tu 1 . + CDS 17041 - 17223 74 ## + Prom 17720 - 17779 6.3 36 23 Tu 1 . + CDS 17999 - 19735 82 ## BSU21040 hypothetical protein 37 24 Tu 1 . - CDS 20772 - 20882 57 ## - Prom 20941 - 21000 3.5 + Prom 21275 - 21334 3.6 38 25 Tu 1 . + CDS 21539 - 21733 88 ## + Prom 22406 - 22465 2.2 39 26 Tu 1 . + CDS 22549 - 22773 70 ## 40 27 Tu 1 . - CDS 22796 - 23320 88 ## 41 28 Tu 1 . - CDS 23429 - 23560 63 ## - Prom 23591 - 23650 3.1 + Prom 24400 - 24459 6.1 42 29 Tu 1 . + CDS 24494 - 24970 -40 ## BATR1942_07900 hypothetical protein - Term 25247 - 25285 -0.1 43 30 Tu 1 . - CDS 25389 - 25475 71 ## - Prom 25575 - 25634 5.2 + Prom 26092 - 26151 4.0 44 31 Tu 1 . + CDS 26298 - 26390 71 ## 45 32 Tu 1 . + CDS 26529 - 26777 104 ## + Prom 26951 - 27010 3.2 46 33 Tu 1 . + CDS 27077 - 27154 82 ## + Prom 27193 - 27252 5.6 47 34 Op 1 . + CDS 27427 - 27777 86 ## 48 34 Op 2 . + CDS 27831 - 28346 62 ## 49 35 Tu 1 . + CDS 29159 - 29623 -49 ## COG0582 Integrase + Term 29716 - 29760 3.1 + Prom 30728 - 30787 2.2 50 36 Tu 1 . + CDS 30826 - 30936 114 ## - Term 32271 - 32315 -0.9 51 37 Tu 1 . - CDS 32344 - 32481 61 ## - Term 33314 - 33362 11.1 52 38 Tu 1 . - CDS 33374 - 33760 76 ## - Prom 33786 - 33845 9.4 + Prom 33886 - 33945 5.9 53 39 Tu 1 . + CDS 33971 - 34426 136 ## gi|328553359|gb|AEB23851.1| hypothetical protein BAMTA208_08390 + Term 34434 - 34471 7.1 + Prom 34539 - 34598 7.3 54 40 Tu 1 . + CDS 34646 - 35134 62 ## + Term 35294 - 35328 1.0 55 41 Op 1 . - CDS 35830 - 36459 48 ## CLI_1932 hypothetical protein 56 41 Op 2 . - CDS 36478 - 36846 96 ## BBR47_42170 hypothetical protein - Prom 36881 - 36940 7.3 + Prom 37165 - 37224 2.9 57 42 Tu 1 . + CDS 37248 - 37559 155 ## + Term 37564 - 37598 3.6 58 43 Tu 1 . - CDS 38018 - 38098 66 ## - Prom 38276 - 38335 3.0 - Term 38218 - 38253 3.1 59 44 Op 1 . - CDS 38411 - 41791 1106 ## COG2866 Predicted carboxypeptidase 60 44 Op 2 . - CDS 41809 - 42837 313 ## COG1316 Transcriptional regulator 61 44 Op 3 1/0.500 - CDS 42877 - 43548 301 ## COG1835 Predicted acyltransferases 62 44 Op 4 . - CDS 43590 - 44714 174 ## COG1835 Predicted acyltransferases - Prom 44835 - 44894 5.8 - Term 44832 - 44880 5.1 63 45 Tu 1 . - CDS 44925 - 45662 85 ## BLi02453 hypothetical protein - Prom 45803 - 45862 3.8 - Term 45963 - 46002 3.1 64 46 Op 1 40/0.000 - CDS 46061 - 47521 219 ## COG0642 Signal transduction histidine kinase 65 46 Op 2 . - CDS 47527 - 48246 270 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 48335 - 48394 3.8 + Prom 48479 - 48538 7.8 66 47 Tu 1 . + CDS 48644 - 49843 364 ## BL05081 threonyl-tRNA synthetase + Term 49884 - 49917 5.4 - Term 50358 - 50407 -0.3 67 48 Tu 1 . - CDS 50470 - 50865 226 ## COG1733 Predicted transcriptional regulators - Prom 50978 - 51037 4.5 + Prom 50934 - 50993 3.7 68 49 Tu 1 . + CDS 51105 - 51644 511 ## COG2249 Putative NADPH-quinone reductase (modulator of drug activity B) + Term 51658 - 51697 8.6 69 50 Op 1 . + CDS 51868 - 53442 1355 ## BCAH187_A0765 spore germination protein GerKA 70 50 Op 2 . + CDS 53459 - 54526 954 ## Bcell_1074 spore germination protein 71 50 Op 3 . + CDS 54523 - 55647 1041 ## BC0633 spore germination protein KC + Term 55683 - 55721 5.2 - Term 55667 - 55713 9.5 72 51 Tu 1 . - CDS 55761 - 57038 931 ## COG0673 Predicted dehydrogenases and related proteins - Prom 57066 - 57125 4.7 73 52 Op 1 7/0.000 - CDS 57152 - 58828 1375 ## COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain 74 52 Op 2 . - CDS 58842 - 60572 1775 ## COG2972 Predicted signal transduction protein with a C-terminal ATPase domain 75 52 Op 3 7/0.000 - CDS 60609 - 61493 810 ## COG0395 ABC-type sugar transport system, permease component 76 52 Op 4 2/0.250 - CDS 61506 - 62363 915 ## COG4209 ABC-type polysaccharide transport system, permease component - Term 62439 - 62477 3.5 77 53 Tu 1 . - CDS 62522 - 64147 1903 ## COG1653 ABC-type sugar transport system, periplasmic component - Prom 64210 - 64269 5.3 + Prom 64324 - 64383 3.5 78 54 Tu 1 . + CDS 64467 - 66212 1579 ## COG3290 Signal transduction histidine kinase regulating citrate/malate metabolism + Term 66286 - 66323 8.1 - Term 66273 - 66310 8.1 79 55 Tu 1 . - CDS 66320 - 66739 376 ## COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases - Prom 66925 - 66984 4.7 + Prom 66863 - 66922 4.2 80 56 Tu 1 . + CDS 66958 - 67542 701 ## GYMC10_0439 cell wall assembly/cell proliferation coordinating protein, KNR4-like protein - Term 67676 - 67711 2.4 81 57 Tu 1 . - CDS 67713 - 68543 223 ## PROTEIN SUPPORTED gi|149913192|ref|ZP_01901726.1| 50S ribosomal protein L35 - Prom 68581 - 68640 10.1 + Prom 68545 - 68604 8.1 82 58 Tu 1 . + CDS 68662 - 69381 878 ## COG4122 Predicted O-methyltransferase 83 59 Tu 1 . - CDS 69499 - 70230 581 ## PPE_02201 hypothetical protein - Prom 70397 - 70456 4.4 + Prom 70470 - 70529 4.5 84 60 Tu 1 . + CDS 70558 - 73296 2404 ## COG0642 Signal transduction histidine kinase + Term 73310 - 73349 5.9 + Prom 73377 - 73436 6.3 85 61 Op 1 . + CDS 73474 - 73917 414 ## BMB171_P0159 transcriptional regulator MarR + Prom 73930 - 73989 6.9 86 61 Op 2 . + CDS 74013 - 75219 1078 ## COG1680 Beta-lactamase class C and other penicillin binding proteins Predicted protein(s) >gi|333606120|gb|AFDH01000066.1| GENE 1 2 - 545 51 181 aa, chain - ## HITS:1 COG:no KEGG:BATR1942_07685 NR:ns ## KEGG: BATR1942_07685 # Name: not_defined # Def: hypothetical protein # Organism: B.atrophaeus # Pathway: not_defined # 1 181 38 225 463 72 27.0 1e-11 MSEYDIPSGFFNEIIKKESLLGEIDTAVLCLISIAVFKIYGSDEVRAENYFTEGEISEAR KYTGKEKDDVNLPISINSVLQIDHENFVTTIKISEPVKWYHNKIIVYDFETQRSAKYKKG RDGVVPVPDVNLQSVKDIAEHMLNETYLPDMITLNVYSEDFDPITYNPKSKVLTIKEGAI V >gi|333606120|gb|AFDH01000066.1| GENE 2 968 - 1066 68 32 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MEKNRFDMSLLELIELYKEKSKTFIVLERMYI >gi|333606120|gb|AFDH01000066.1| GENE 3 1586 - 1903 81 105 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSESVMIYVRVGTQEQAEQKLCNQISECKQFAEDNDKRVAVVYNDVISANRLGERFENIL DEMKTQGIDELIIHHWSRISRNVKSVDEIDQMFREQGKFIISIAD >gi|333606120|gb|AFDH01000066.1| GENE 4 2055 - 2516 -79 153 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MYYKNNRKQIGLLIFCISVEVPIMFMVYYLGHSALINFTDNKIISISALLLVLVFFLLAF LFLFGAYQVVKNIIERLNSASPKLKVFIQLTNANSVTGELLTINRKSDYIIRSNEGNEIL VKNNGIATVYILNDSEIILNQFENKQVSHSVNR >gi|333606120|gb|AFDH01000066.1| GENE 5 2784 - 3203 164 139 aa, chain - ## HITS:1 COG:no KEGG:PPSC2_p0562 NR:ns ## KEGG: PPSC2_p0562 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa_SC2 # Pathway: not_defined # 1 131 1 134 207 76 36.0 3e-13 MLKDLSFEEISKFFEELATKDTGRFQLSRIYGMAKTFLEQREKEEEIEKLIVNDYRSAVN TTIISEDLAVVEVEVRLNKTKEIAFYPVVDNKLIKESRNTFDEALLLGFCKKYNNEKYDS AIFNMLRMDLYMNRTVDES >gi|333606120|gb|AFDH01000066.1| GENE 6 3243 - 3710 -115 155 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTLEEAQEIVSKYGAALASGKDGEFARDKGLLPASRDRIIKAFKLVCAFHIKQTGLSQEF GEALINSLVSINLFADKVTYKQVNSNPTQGIQFMVENGRDGELFDEINQFIGKVYELNPD DPLYYQRVYTLANIEYRSNAEDAKSTLFQRLFGRR >gi|333606120|gb|AFDH01000066.1| GENE 7 3738 - 3983 90 81 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFEYRVVKTSENDVEVYKVVEVYFDKYSGKINGWAPTSYTTALLWEEFDDLKVTVSHIVK ALEKPILLHIPEKNDALVEMQ >gi|333606120|gb|AFDH01000066.1| GENE 8 4016 - 4351 144 111 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSPMTIGLLMYGGLAIIPIAAVVYAFYIKKKIYSETNKARLFDLELLKRGMGWIKIQPTE AVHVSDVASWDEKHRILQMKDGSKKKVHKVWALTMEKEIHFAKSMVEKNNA >gi|333606120|gb|AFDH01000066.1| GENE 9 4419 - 4640 102 73 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MESYGEDKWWISDNADYLAYKQFQEDTMLVESHAWQKATEKLIGREISFLELKLNYREIK SEVLTAYDEKYNH >gi|333606120|gb|AFDH01000066.1| GENE 10 4939 - 5022 96 27 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MRISTKNNKLIFKMFIYNTMKFKPIHH >gi|333606120|gb|AFDH01000066.1| GENE 11 5927 - 6025 115 32 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRANFEEKDAPSLAGENYWWSCVLEQLEDGLL >gi|333606120|gb|AFDH01000066.1| GENE 12 6599 - 6718 66 39 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTLIEWIVGEGRVFKDALGTELRIISVKYSRVHYLTTIF >gi|333606120|gb|AFDH01000066.1| GENE 13 6726 - 6923 231 65 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKTMSQIKYHIDELLREKKAIKNQQIEEKVDEFTKIMIDMPPKDNDDLKRLLRMFAKDVK YITQQ >gi|333606120|gb|AFDH01000066.1| GENE 14 6952 - 7479 194 175 aa, chain - ## HITS:1 COG:BH1443 KEGG:ns NR:ns ## COG: BH1443 COG1396 # Protein_GI_number: 15614006 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus halodurans # 5 64 4 63 107 59 46.0 4e-09 MSIGERLRYLRESISLSQGDLAKTLNIARTTYSGYENDIREPDFHFIIKVADLYNVTLDY LFDRQLKEGQIVTPKKEEISLRLKKSRELKGLSQREVSKLSGINNKTISGYENNVSEPDL LTISKLASIYGVSIDWIINGLHFKIDGSNGVLEEQLEHSRELLQKFKELAEQIKV >gi|333606120|gb|AFDH01000066.1| GENE 15 7786 - 7956 80 56 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKRYCLQRYDGRDDKAGIEYWQRIKDSENLEVIKLFCPAGYRIIDNVTKEVAWEIK >gi|333606120|gb|AFDH01000066.1| GENE 16 7976 - 8251 135 91 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MEYEYFKNLLLKQSDGLTEKDAILVLNEKDIIWGDLTFTFKTQGNGWRTAIYCNNSDTYI TPQDLNPIEEKWFFAQVTELSMEKYKALQTA >gi|333606120|gb|AFDH01000066.1| GENE 17 8444 - 8923 71 159 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229113392|ref|ZP_04242845.1| ## NR: gi|229113392|ref|ZP_04242845.1| hypothetical protein bcere0018_55650 [Bacillus cereus Rock1-15] hypothetical protein bcere0018_55650 [Bacillus cereus Rock1-15] # 8 159 2 151 151 176 60.0 7e-43 MDDKARRLREITTKEQLTMLLNDRSENTETWLVHNSVLENLLELGTNNMREMSENEITEL AQYLGTNAEQLNRPFMVDSNLICPTCSRKLTFLDFVKTAIEGDPKLHSKERIADILSGRN GNWLTIGGRKFERTVYCSNCGEGIVYRTHNYSNRNYAYA >gi|333606120|gb|AFDH01000066.1| GENE 18 9054 - 9149 134 31 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKMDKKMVLAQYCFETRSLSEYEKKLVREAF >gi|333606120|gb|AFDH01000066.1| GENE 19 9291 - 9386 81 31 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MEKMPNNITDSTQIVCDYSNCFQPQLTSKNA >gi|333606120|gb|AFDH01000066.1| GENE 20 9465 - 9644 182 59 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MDDKRFETIYTQGKFELIKVIRDNETGILYMSQREGYGLGLTVMYDQEGKPLVDKNFKK >gi|333606120|gb|AFDH01000066.1| GENE 21 9774 - 10166 162 130 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFASGKKGAIISQDLSKVVTVIEYRRGHIPDLDKKNPLHNKLVALYHSEMKRLTKLEQSL LKKLKETKLYNDIEIAELNLKLYKTRSEKTKKEVEQRIAEIKNKFEEQEFAMKQIESDKR IIAKSMACLT >gi|333606120|gb|AFDH01000066.1| GENE 22 10334 - 10558 157 74 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MDQLIEDLTVVLIHLTANGHQSWRGYDTDVLRKLKKENLIDLSNSWQTIYIGEDFKNKAI EIMSKYHLASEEKV >gi|333606120|gb|AFDH01000066.1| GENE 23 10579 - 10758 169 59 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKKICIPYGSKVFDIEVGNWIPVVKDEFIDIESTLLIDGESFSIEEIWEDNTVWVKQIK >gi|333606120|gb|AFDH01000066.1| GENE 24 11237 - 11659 190 140 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MDVIQFMKSVDKELRNIVKEGKPAKCHTYCNLIASYLNVHFDEKIKHVRVLGHGWVSSDD FVLDYVQPFEGEQTIGDNKSELYLFHKYMESEGNAENYDLLALEEVTSVKNPYFPGSFIE YIKSNFSKIDDRVVDMGYYK >gi|333606120|gb|AFDH01000066.1| GENE 25 11695 - 12219 -85 174 aa, chain - ## HITS:1 COG:no KEGG:EAT1b_2140 NR:ns ## KEGG: EAT1b_2140 # Name: not_defined # Def: hypothetical protein # Organism: Exiguobacterium_AT1b # Pathway: not_defined # 2 174 3 188 214 89 33.0 6e-17 MLIYSLQTLSVWELARKIGYLEGAQEHAMFPEHYKWMMGEMSKRLPSYTGEYPIWLWVKK PDMRSSAHFIGGTKCVRLTLELDDKDVLISDFDRWHLVLNNGFCSDNEQEDENFDNGKLN ITKEESWERIFDLTRNVDVEWTGNGEWLQGTTGRIYLDKVKKVEHFITRKSKLY >gi|333606120|gb|AFDH01000066.1| GENE 26 12255 - 12524 110 89 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSKYENFTDFLRSNDEDQITIKITYLNELVKRIDPKGLPQSAYNDNWKTWWSNNKSSTSR QCDAWLKVGWKTDLTKSKQGEYITFIKDE >gi|333606120|gb|AFDH01000066.1| GENE 27 12706 - 12837 68 43 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSKEFAMLGFAAAMMSDEMFVLRKKKEKVVQCPWMSDDNLMTG >gi|333606120|gb|AFDH01000066.1| GENE 28 13168 - 13452 93 94 aa, chain - ## HITS:1 COG:BH0522 KEGG:ns NR:ns ## COG: BH0522 COG2337 # Protein_GI_number: 15613085 # Func_class: T Signal transduction mechanisms # Function: Growth inhibitor # Organism: Bacillus halodurans # 21 78 3 60 116 78 65.0 4e-15 MAAVLERKYSEVNKMTQKAEVNRGEVWTVRLDGNVGSEQGGVRPCVIISNQKGNKFGTTV IVAAISSQIQKAKLPTHVVLEGGIDGVSLTRLLC >gi|333606120|gb|AFDH01000066.1| GENE 29 13680 - 14156 17 158 aa, chain + ## HITS:1 COG:no KEGG:Aaci_0431 NR:ns ## KEGG: Aaci_0431 # Name: not_defined # Def: transcription factor, RsfA family # Organism: A.acidocaldarius # Pathway: not_defined # 1 151 9 170 179 89 33.0 3e-17 MRKDNWTSQEDKTLAHTILKHIASGSTQLQAFDEVSTIVGRSSAACGFRWNSELRKRYSE EIRNAKTKSIESKMKRSNNDYSKQPKLDYEETFGGLLDKLKSKIILLEHELDQVKTENAR LKTALQDSRPDLVMSEDFKNMIKIIERARSLGVLEKTS >gi|333606120|gb|AFDH01000066.1| GENE 30 14382 - 14921 -130 179 aa, chain - ## HITS:1 COG:BS_yoqV KEGG:ns NR:ns ## COG: BS_yoqV COG1793 # Protein_GI_number: 16079109 # Func_class: L Replication, recombination and repair # Function: ATP-dependent DNA ligase # Organism: Bacillus subtilis # 5 167 37 199 270 124 39.0 7e-29 MVSNNDGVRLYTRHGNDVSHKFRELLDCPLPEGTIVDGEVVVIDNSGKPDFEALSKRFLS KNDKALVTFYAFDILRYRGTDTTGLSLLKRKELLLKAFEETEAYKHVQWSVGSANDLYGL VKTNGSEGIVQKHENSKYEIGRRSWAWQKVINWTHAEVFITGYKKNEFGCLHLFKKTGS >gi|333606120|gb|AFDH01000066.1| GENE 31 15109 - 15261 203 50 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MYTVTAIEKWRNELAINTYTFDDFEKFNLFTQMCKEDKIFYVTKENRVAV >gi|333606120|gb|AFDH01000066.1| GENE 32 15303 - 15782 147 159 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGMTKSLKRSQFLYVAHFSEGSIKKSDRQMCILQSIIIAGKLDLPSFSTKDIEAIFKQNE IEDETLKLLDSAYNSIEKTFQGKSKFVTKVNIPSMVALFLNNSDQEKVSTFLQWYSQNNK IGDAYRRYCIGGNTKKDQVWGRVNGLQALYNDFVPESSE >gi|333606120|gb|AFDH01000066.1| GENE 33 15829 - 16038 81 69 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTKLEPVTLESTGETHDISGLRFSELPEDVQDAINSFMITFRVLEFDENDDEENIVNTVF YRLNNGKTV >gi|333606120|gb|AFDH01000066.1| GENE 34 16597 - 16878 122 93 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNKATYNIVSLQHDSVYEDIQAFLSRHGIQNASTAQNYERGIRKFFMYMKNKNIKDLKRE DLHFRNVDMIRYQKYLIDQYNKKLLLMLTWPRY >gi|333606120|gb|AFDH01000066.1| GENE 35 17041 - 17223 74 60 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MRMIGASFASWQDDYYDGVENGESECRDLELEMHIEYMNDTSDDYLLALKRQGGKNNQSR >gi|333606120|gb|AFDH01000066.1| GENE 36 17999 - 19735 82 578 aa, chain + ## HITS:1 COG:no KEGG:BSU21040 NR:ns ## KEGG: BSU21040 # Name: yonO # Def: hypothetical protein # Organism: B.subtilis # Pathway: not_defined # 2 572 264 820 839 512 51.0 1e-143 MMVRLPWIKGLLVPFPFDKFIREKSKNSKVKDIYGKEYDILKDRIEVIFTKSQFKMWKYY SSWDEYKAFYKLHNCHASKCSEEDAVFRKAKLNYQMLQTLTDFSHDELMSVSAKTIEKIT NIGRDRDTMLSILGVKESNKNKDYFQQALELYPELLNDTYSREVLKQVKKSIVKEAKSGK IDVEGYYTFISPDLYAFCEYLFLNDLTPAGLLDNGQVYCSLFKEYSTLDCLRSPHLYREH AVRQNIVDKEKSRWFVTKGLYTSCHDPISKLLQFDVDGDKSLVCADSVIIDVAERNMKDI VPLYYNMSKAEAQMISDAEVYKGLSAAYTGGNIGLYSNNITKIWNSENPNLDVIKLLCCE NNFVIDYAKTLYKPTRPDSKAKLIKGYTKAKNPNFFIYAKDKSKDSVENTNTSVVNRLQK LIPNPRLNFRAANLGQFTYKMLLSDTNKYIDISKESNLIEKFNKLDLKRRFFSLVDEEDL YSSSFRYKEIRDILVDFNSNINYVVDVLIEYLYMYKKSSFKTTLWSSFGDVIVENIKRNV TNPLKGGYIQCNVCGDRTLETSNRKNIATVAGKRSKKE >gi|333606120|gb|AFDH01000066.1| GENE 37 20772 - 20882 57 36 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLESIYVFHFLDAQNEPGIEQLLYIFVFGLGVVFFL >gi|333606120|gb|AFDH01000066.1| GENE 38 21539 - 21733 88 64 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MGDLGKLLEDQFSSMLAYVAEQERKKNKKLQAEGIEVAMTRLLLHMILGKLDRLLHGRQW IKQA >gi|333606120|gb|AFDH01000066.1| GENE 39 22549 - 22773 70 74 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MPAIEVNGTTYLDLWSYSNLMIAAGSENNYMVWSDNNTKVKIVIGSQENTLYKDKDIVIY KGASYINSKFYVKP >gi|333606120|gb|AFDH01000066.1| GENE 40 22796 - 23320 88 174 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGVNATIAWDKVTGQPYIPQVPSYIQSTKITQTTIESPNIFGGAIAIGSGNNIFKADSNG ISLGNACFGSAPFRVDMGGRVTASNINITGGSINVNTDAKVGNNLTVGETICLSTTSMSG GIRWGMQPGTNPIYIDPAANALHIISPNAIHFHSPNGVFANGRRIDTPQVAVFG >gi|333606120|gb|AFDH01000066.1| GENE 41 23429 - 23560 63 43 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKNENGTWISMLKFDSQTGNLSVDGSINARELKINGENVLARH >gi|333606120|gb|AFDH01000066.1| GENE 42 24494 - 24970 -40 158 aa, chain + ## HITS:1 COG:no KEGG:BATR1942_07900 NR:ns ## KEGG: BATR1942_07900 # Name: not_defined # Def: hypothetical protein # Organism: B.atrophaeus # Pathway: not_defined # 36 126 478 563 563 75 46.0 5e-13 MSDTNSNDLESVKRTLLVLNRPFISNLWDSTLIEADALVEMLGLDLISFTEEYDMKEHLT LFEESKDMKQAVPKIHKLTFDEEMALKNIDLTKEETVNIYRYDNPSGGYRYALSPDKQNK MNDDRSYCLAMLAWKLQQLRRKNITGKQKSKNMIFLYN >gi|333606120|gb|AFDH01000066.1| GENE 43 25389 - 25475 71 28 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLHQLFVCNLTVTAEDMNHDHTHYNGHI >gi|333606120|gb|AFDH01000066.1| GENE 44 26298 - 26390 71 30 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MANKYGIVRLDRVSGTPDGRLKAKVDLENG >gi|333606120|gb|AFDH01000066.1| GENE 45 26529 - 26777 104 82 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKPRTYEKVAGDIFTATTIGYTGGTSPRSDFNSIQVGDKGHVQSSGKLVFYAAADTTAYL PVEVIGKTKLNGDNAVQVKIVK >gi|333606120|gb|AFDH01000066.1| GENE 46 27077 - 27154 82 25 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MVKFLQPILLSVLSNHVKNYIKIHL >gi|333606120|gb|AFDH01000066.1| GENE 47 27427 - 27777 86 116 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTGISNGAGFDWNKTSEADRLDISNLGHVGKYKGSDVVELPNSFTDETNAQKLLDDGYIY MAPINGDKPVKIVLEGKMHIRDKQERDWSTTKEYYRKAGISVLAINHMALYENTSL >gi|333606120|gb|AFDH01000066.1| GENE 48 27831 - 28346 62 171 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MAVKKEQLVKVVNNMPVGGLGIDNQEGKIKILRKPGTSINVSHDDIWHIFNSCKMIQKGH LYIDDKSMRQELGLEDGDTVDVNSLSREELKEVVTAGNIEELKKLFGADLSQGTKEKIVI LAREQYKESSIDAKILKLIETETGMPVAQENGEAVSDVNDVKSTKVPLKTK >gi|333606120|gb|AFDH01000066.1| GENE 49 29159 - 29623 -49 154 aa, chain + ## HITS:1 COG:mlr0475 KEGG:ns NR:ns ## COG: mlr0475 COG0582 # Protein_GI_number: 13470699 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Mesorhizobium loti # 29 153 264 388 399 102 42.0 3e-22 MVFGQIRISQILAFKGEIKDGANTVSGNRSISTPPIVVPELRMHRTTIIREKWETQEEYK DYDLVVCRKNGMPVSWSNFHKFWLRILSKTKVRPIRFHDLRHTCASILLSGGIHPKIVQE LLGHSSIKITLDTYSHMMPNIQADAVKTLEKMLN >gi|333606120|gb|AFDH01000066.1| GENE 50 30826 - 30936 114 36 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MERYINQVGMDKNTLSNNSEEKLTHLTQLYQYGIFT >gi|333606120|gb|AFDH01000066.1| GENE 51 32344 - 32481 61 45 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVGDNPSINKMRDRIFYKAIEDRSENKERAWGNRYSWIKSCYRYT >gi|333606120|gb|AFDH01000066.1| GENE 52 33374 - 33760 76 128 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKKSLVTLVLAGVLSLVGVSEAFAANQYEYKSLTNNQSGVTNWVQGQHAYGRWTLQVTSG TVNANLYESCPGYPAFIYMEGLTVTAANGSSAEKSSDYYMSGNCLYQVEVYKDNNKAVSS KIHIRNYK >gi|333606120|gb|AFDH01000066.1| GENE 53 33971 - 34426 136 151 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|328553359|gb|AEB23851.1| ## NR: gi|328553359|gb|AEB23851.1| hypothetical protein BAMTA208_08390 [Bacillus amyloliquefaciens TA208] hypothetical protein LL3_01910 [Bacillus amyloliquefaciens LL3] # 39 149 29 144 144 70 35.0 6e-11 MKKSIVSFLVATLLLSSVSSVALAEQNAVSPQGLITPLADSGWQTKNKIRARVYTDANSY GPGTNKIKITAEKSTAGAAYYQLYLMNSTQMVQVGSGTIGSSVTLDAAVSNIVPVNSQAS IKVLLKIYAYGDWDTWLGDWETDSFTVVRIN >gi|333606120|gb|AFDH01000066.1| GENE 54 34646 - 35134 62 162 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKKVKAVALFSFAVASVLSFSGNTYATADSISNLNVPSIITTLEDRTGFSYSFSMLSKSG SPLPSSGTITTNKSSDVYVTLVQWETKDREGQGTAWSADMAYDLEETTTKNKAGEISVRE LLTSNNKTIGWTNVKPGTYKLIIKNTGSYWAAGNGFVRAYEK >gi|333606120|gb|AFDH01000066.1| GENE 55 35830 - 36459 48 209 aa, chain - ## HITS:1 COG:no KEGG:CLI_1932 NR:ns ## KEGG: CLI_1932 # Name: not_defined # Def: hypothetical protein # Organism: C.botulinum_F # Pathway: not_defined # 1 208 1 226 226 189 45.0 8e-47 MIYITGDIHGTISVGSRLNKRNFPEQKSLTKKDCVIIAGDFGLIWDGSREDQYWLKWLHK EKPFTTLFIDGNHENFDLLEQYPVEIWNGGKVHKINSSVIHLMRGQVFTIENKKFFTFGG AASHDKEYRKEGKSWWKREMPSKDEYEEGLENLKRSLFSIHMERDEMHPYFYEIEKKLKY KRWYFGHFHQNVELTRNKRLIYSDLIKIQ >gi|333606120|gb|AFDH01000066.1| GENE 56 36478 - 36846 96 122 aa, chain - ## HITS:1 COG:no KEGG:BBR47_42170 NR:ns ## KEGG: BBR47_42170 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 1 118 1 118 125 167 65.0 1e-40 MPFKTEYEFELPRGFEDSSGNIHKKGAMRLATAADEILPMRDPRVQANPQYLFVIILTRV ITRLGDLPMIDTKVIEQLFIADLAFLRDLYRKINKDEDPVIPATCPICEHEFIVPIGLKW ED >gi|333606120|gb|AFDH01000066.1| GENE 57 37248 - 37559 155 103 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNFKALTIGALVGISLVFGSVGAFASPVNANASTVSPHADQTLILRIGEVYNTNGYVTIL NNPQNAVVVEFQSYVKGLQPGQALISVNKNGQITTYDVFVKAF >gi|333606120|gb|AFDH01000066.1| GENE 58 38018 - 38098 66 26 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIFCYLLSWSKITAVQYISVGEFNRI >gi|333606120|gb|AFDH01000066.1| GENE 59 38411 - 41791 1106 1126 aa, chain - ## HITS:1 COG:BH3865_1 KEGG:ns NR:ns ## COG: BH3865_1 COG2866 # Protein_GI_number: 15616427 # Func_class: E Amino acid transport and metabolism # Function: Predicted carboxypeptidase # Organism: Bacillus halodurans # 33 397 25 381 381 317 43.0 8e-86 MKKKPTKHAFGLMISFSLMIGTVDPGHVKAEPIQDVESQTASHDQKENKTLSRGKAVQEL KMNHHVASMTEKRTFQVKFTLPQNVDSKSISWTYGGKPLSEWKKFAQRDYTGPSFITVSD GKAKDGQYTANITFDLPYDTDNLAEPRLQRPLYASLMGTYELAATAHGQVIAQTPVKLTP YDSFHTYDELKTDIDAVTAQAAKKNDRYIKTISIGKSVEGRDIYLTILAKDKASVDQYQN VTHPAMMNNPKQLQADIQSGTFGDYKVPIWLNNIHPNEAPGVDSIFNFFKSMALDDSISY DTKGSNGQKSKINLNMDQALNQVIFLFVYTDNPDGRVHTTRANPNYFDLNRDNSYQTQPE TRSVTEQIAKWSPLSFLDLHGFDSNFLIEPTTPPHDPNIEYDLLIDSMLEQAKAMGEAGI ANTKYNDYYIPYEEHQKSVKDPNYVPKGISTGWDDATPAYTAVFAMHHGALGQTLEVPES NEESTKALYYSVAGATHYVMENKEKLFMNQLKIYERGIDNKDDRAVDPYLVNAKDEIIGR PRSGNQNFFPEYYVLPIDRSIQKNAYETYRMIEYFLRNGIKVERSIKPVTVSGTTYPAGS FVIDMHQSYHGYANSVLYDGIDVSDYESVAGEIVQDFPVLRGFNRYVIREPRVFEGKTAP VISVTIPATAMPDKPSVYVLLRNTNNDAIKAVNELLASGKHVTMLTKTESEHEAGDFVVS YDDLNPLASKYLLDVSPFSDHMPVGKELKSALVGALGEPAYVLENLGFKVTSDQAQADVL VNTFDSSEQVGKGKPYIAYGNMGMVNVQDWIPGFSFGGPEWKRYEGVFLADVKQDSVITA PYDKQEYFYTITGSYIKTVPKTANILATISSNDDFYKAGWWPGHEAAKGQIMAFTYKENN KNVTVFSNDLTNGAHSQHQFRLLANSIFNAVSNRNQSSESAVGFSDLQSVESWAGSEIHE LARLGLVNGFNGGRFEPLKQVTRVEFLAMIVRAFNLYDQKENISFKDVPPASWYETYVKA AVGLKLAEGTGEGYFEPNRAITREEMAKISANAMKITSGATAGNIEEALAKFGDRETIAP YAREAAALLTQKGIIQGLPGSTFGPKAVATRAEAAVIISRIKQIEG >gi|333606120|gb|AFDH01000066.1| GENE 60 41809 - 42837 313 342 aa, chain - ## HITS:1 COG:lin0463 KEGG:ns NR:ns ## COG: lin0463 COG1316 # Protein_GI_number: 16799539 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 7 312 14 309 309 144 32.0 3e-34 MSLKTKRIAAVLALILIVLSGPVVYYFYSLYKGLEGLNKTDSQKSLFAAVNAAEVESVEP PKWLGTEPVNILLMGVDARGVNKGEIPRSDTMMVVSLDPVRKRIHLFSILRDTYTNIPDH GKNRINTAITYGPNTAMKAVSDLLGIPVQCYVYTDFQGFIKLVDEIGGVDFYVEKDMNYE SAADQHEYDIHLTEGKQHLDGKTALQYVRFRHDALSDYSRTKRQRDFADAVAQKMKSTTS IMKLPSLLEKVSPYIDTNLTVNDIWKLASVGYQSKLEGSEQIPPMELIKETYMGQAAVLD VSSRKKLKDFVQNIMEAEKSVPAESKDSLKTGESRVSAGKNE >gi|333606120|gb|AFDH01000066.1| GENE 61 42877 - 43548 301 223 aa, chain - ## HITS:1 COG:lin1329 KEGG:ns NR:ns ## COG: lin1329 COG1835 # Protein_GI_number: 16800397 # Func_class: I Lipid transport and metabolism # Function: Predicted acyltransferases # Organism: Listeria innocua # 45 222 455 633 633 134 37.0 2e-31 MKKHKGWITWVFIIIILAAGYFSQRHQSSKTTEQGELGGQQITAPQQIKVSSESAPPKTE NKKPPQSLDGEGITVIGDSVIVGIEPYLKEKLPKITVDGKVGRQMSQAQKLIDDLKAEGK LGDRIIIELGTNGPFNNKSLRSLLQSLSDKQVFVVTTRVSKGWQDTVNTTIKDVAGEFHH VKIVDWYAASEGKKDIFYKDGVHLKPDGSRYYASLLIEALQKQ >gi|333606120|gb|AFDH01000066.1| GENE 62 43590 - 44714 174 374 aa, chain - ## HITS:1 COG:BS_yrhL KEGG:ns NR:ns ## COG: BS_yrhL COG1835 # Protein_GI_number: 16079768 # Func_class: I Lipid transport and metabolism # Function: Predicted acyltransferases # Organism: Bacillus subtilis # 10 357 9 357 634 362 50.0 1e-100 MGKQKQLLKRYMPGLDGLRAISVLAVIAYHFNLKWAKGGLLGVEVFFVLSGYLITDQLLW ELKTQRKISLWHFWIRRIRRLLPAMVSMLMVVALGLILIDPSRMQTLKGDFISSVFYVNN WYLIFHQVSYFESFGPPSPIGHLWSLSIEEQFYVIWPLLLFFLVRLLRRQGKLAVFILLG AAVSVIAMALLYVPGTDPSRVYYGTDTRAFAILIGAALAVVWPSWRLTDRISSGARSLLD LLGAVAMLILFIMMNQTNEYDSSLYPVGFLFLSVVTAVIIAVLVHPASQLGAILAAKPLS WIGKRSYSLYIWHYPVIILSSPEANVGEPGFVDILLQLTLIFMLSALSYRFVEEPIRRGR LWWTRSKELNKSTL >gi|333606120|gb|AFDH01000066.1| GENE 63 44925 - 45662 85 245 aa, chain - ## HITS:1 COG:no KEGG:BLi02453 NR:ns ## KEGG: BLi02453 # Name: not_defined # Def: hypothetical protein # Organism: B.licheniformis_DSM13 # Pathway: not_defined # 1 245 135 377 377 198 42.0 2e-49 MKLISLKDGKETEVANFSNNKDLYLQNVAWSNNNQYLCYLVIDPIESGKAFVHLLDVGNQ SSTTYTIKNYGKGKSLTKINVSDDGHSVLLTAFQTGKTKKNIIMLGTVNGKSIDIQYEHQ SDEDQVAWLNNDQFVFLGTDGTLFEYDQRTKELSVLLEKVEGFKLSKDRKCIAYSTYDQD TIYAGKIQGNNVLSNEPVYHGLKPSQMYWSPGEKGLLVYGQKFYSPSSNTQTMTTDGQIL LIEFQ >gi|333606120|gb|AFDH01000066.1| GENE 64 46061 - 47521 219 486 aa, chain - ## HITS:1 COG:BH1945 KEGG:ns NR:ns ## COG: BH1945 COG0642 # Protein_GI_number: 15614508 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Bacillus halodurans # 138 477 135 462 462 132 28.0 1e-30 MIRNISVKFIIGFFLIFSLSFLVLNQTVKESIQTSNKKIVTSELIGLKNNSNIYVRQAFL INHFSNNRLYFGQMAEEMANDLNHATGSSVGVYTVDGALLYSSDKSIPHLNGDLKEAIEG KTAYSITYDRNKASVLFSYPVFIDGTKVGILRFSRDFSLLYEQSGRIKEIIFYIAMAIFA AAFLFSYILSRHITIPLVRLTRASNEVKSGNLEVRIQFRRKDEIGRLADNFNEMIDQIGR QMTIIRKDRDHLQALHEQEKRFFDNITHELKTPLTSILGYAEIIRKKGEADRYFFEKGMN HIIEESRRLHDMVLKLLEASRPNIQIMEPERVDAGSIFKDVCESMGIRAQRYKKSIRYEI QNELIVYGQGNRLRQLFINLLDNSIKYSTDQAEIFVTAKRADTKIQFVFSNPSDPIETDQ IANLFQPFNLGNRQVSEEGSVGLGLSISKSIVDEHGGNIRMTNENNQTIVTVELEYMNVR KDGKPI >gi|333606120|gb|AFDH01000066.1| GENE 65 47527 - 48246 270 239 aa, chain - ## HITS:1 COG:BH3157 KEGG:ns NR:ns ## COG: BH3157 COG0745 # Protein_GI_number: 15615719 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Bacillus halodurans # 15 236 4 233 239 192 44.0 5e-49 MILTKKTGVTMNQAKILIIEDDAAIADLLSYGLSMEGFETKTTACGAEGMMELQQFQPDL LLLDWMLPDQSGLDICKKVTASHNLPIMMITAKSDITDKILGLEFGADDYITKPFDLREV VARIRTILRRVDQANKRHDDQREVIRLEHIEIIVEERLVQKDGHAVDLTPKEFDLLMTLI GHRGKTYTRAELLDIVWGYDFHGDTRTVDTHIQRLRKKLDAGDLIVTVFGIGYKFENRR >gi|333606120|gb|AFDH01000066.1| GENE 66 48644 - 49843 364 399 aa, chain + ## HITS:1 COG:no KEGG:BL05081 NR:ns ## KEGG: BL05081 # Name: not_defined # Def: threonyl-tRNA synthetase # Organism: B.licheniformis # Pathway: not_defined # 34 390 72 429 441 435 67.0 1e-120 MSARFKMPDENGNEKEKGTDSGHSRPENTFPNGRGNPQGAGRLLALDAARGLAVIGMYLQ HFASKERITTIVSGNTTLLFVLCGGISYSIMAQHMKNRQKDTTAFWAKMLARAVFVDIMG YLLIMLNTSFGVILPAYAAMFVLALVLVGLSNRTLVTTTVALMFLAPPLMLLGMSALSGA SLLRDVAGGPMSTLALAPAFVAGMAIGSLDLTKKRTAFLLGIGGLMLLIIGKTLAAYVLP ELSRSFESWLVTVQGTAAMPDPYAIWPLNLEQPMWHMLLWTVPHSASTFQTLTGLGFALL VLGIVFLVPKKTNAILVPFAGVGRVALTMYAAQFVVVWLLTLSRIDYSLDRVPLGDLLVA MITLVAGWLISRLPHGPLESSMRHFDRLFSVPRSINTPK >gi|333606120|gb|AFDH01000066.1| GENE 67 50470 - 50865 226 131 aa, chain - ## HITS:1 COG:lin0869 KEGG:ns NR:ns ## COG: lin0869 COG1733 # Protein_GI_number: 16799943 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 19 112 8 100 117 119 58.0 1e-27 MTAGNRMPLNDRQPGTTEGIMTTLDVIGGKWKPLILFVLLHQGTKRFGELRKLLPSVTQG MLTNHLRELERDGLIVRKIYQEIPPKVEYSMSDHGRTLSTILADMCGWGFMHRGVIESSG QAEPSRMGESD >gi|333606120|gb|AFDH01000066.1| GENE 68 51105 - 51644 511 179 aa, chain + ## HITS:1 COG:BS_ywrO KEGG:ns NR:ns ## COG: BS_ywrO COG2249 # Protein_GI_number: 16080652 # Func_class: R General function prediction only # Function: Putative NADPH-quinone reductase (modulator of drug activity B) # Organism: Bacillus subtilis # 1 170 1 170 175 171 48.0 6e-43 MKIMVITAHPDLTASRINRAFARKASTVPGVYVRDLYREYPQWTIDVEKEQRLLTEHDRI VFQFPLYWYSSPALLKKWFDDVLTYGWAFGTDGVHLTGKEFIVATTTGGTESQYRSGGSN WHTLSEFMKPIQSTLEKCNGVFLPVFAAYHLSDAPEAELQAEADRYAKHIVSLQADLAN >gi|333606120|gb|AFDH01000066.1| GENE 69 51868 - 53442 1355 524 aa, chain + ## HITS:1 COG:no KEGG:BCAH187_A0765 NR:ns ## KEGG: BCAH187_A0765 # Name: gerKA # Def: spore germination protein GerKA # Organism: B.cereus_AH187 # Pathway: not_defined # 43 520 19 496 500 472 49.0 1e-131 MKLFRHLFHMNKKSAPALAPAPTPAPAPAPAQETADTVTIKSSLAENARYLDQAMFHTDD LVKLSLTYQNQALLLCYLDPMCDEVKIRSFILKPLAESEEENLADVFTAPRVYAQTSLDE AADTLLQGQAVLFKESSKECYSITVNAEVKRTTEEPENEKTVRGSHEGFVENMTVNLHLI RKQIKNRHLVIRRYTLGKESRTEVALAYLNHVAKPELILEIDKRLRTIAGANTLSTDLME EYIEDRTLSPFPQILTTERPDRAAANLLEGRAVLISAGTPSALVMPVTFFSFYQSPDDYY SRTLAGSFIRFIRLLSFVIAITLPAFYIAVITFHYEVIPAELLFQIKGSVEMVPYPPLLE AMFMELTLELLREAGIRLPGPIGQTIGIVGGLVIGDAVVRVGLVSYPMIIVVALTAISSF IVPSHEMSASVRLLRFAVMLPAALLGFIGIVFSLIFILIHLCKLESFGTPYLAPAAPFRL KDWKDTLFRFPLWKKDNRVNMAKPAVKKDNADSKELQENDTQFE >gi|333606120|gb|AFDH01000066.1| GENE 70 53459 - 54526 954 355 aa, chain + ## HITS:1 COG:no KEGG:Bcell_1074 NR:ns ## KEGG: Bcell_1074 # Name: not_defined # Def: spore germination protein # Organism: B.cellulosilyticus # Pathway: not_defined # 2 344 15 358 365 224 36.0 4e-57 MLFLVLQTQIGVQVLFMPSRVQAFAKGDAWMSVLLAGLFSQLLILMMWALNKRFPSATLY DFMPRLTGKAAAAFLQVLYIVYFTVQSSLILMFFYEVIRDWVFPETPEWLITGLMVLACI YLTQENLQIIARFFLLVSIVILVMIFISVYAYTHSNLLYIFPIGQAGFLPVMRGAHEAMN TLTGYEWILFCYPFVEGTPRRKLAAASAANAFSTLLYTFLVFTSIVVFSPSELGLLPHPV LYMVKALTFTIIERPDLYFLSAWIVVVATSIMASLYMASTGISHLFGMSNHRKPVLFTAV AFLAIALLIHDQGVMRTLGKIFSLSSYFFLGCVPLLLLLISLALHIREGGRGLVE >gi|333606120|gb|AFDH01000066.1| GENE 71 54523 - 55647 1041 374 aa, chain + ## HITS:1 COG:no KEGG:BC0633 NR:ns ## KEGG: BC0633 # Name: not_defined # Def: spore germination protein KC # Organism: B.cereus # Pathway: not_defined # 11 372 12 372 374 227 35.0 6e-58 MNRFSKTAASLLTLLLLSGCWDQQLLKNSRIIHIGGFDRGEGDELKVTVAFPDVSSIEGG RSETNEIHTVTSNTTQQARGFLDHEISGNYSPSKLLVLLLGEEWARAQNIMPYMDVYYRD PKSPLNARLAVVNGTAEGLIGLKKVGTKLLGRFLDALLENMEDGTVIPRVNFQSIGPVKP GQDFALPYVSIHNKKPVVQGVALFHNNVMTASLSSEESLIYLLLKGQKGKTARLTLPVNI EEEEEHVTKADRYITVDLHKYSRNMKVELTENGGVRVKIQLKINAAVIEYPLDRLNKKET LQKLDAALSRLLTARAKAITRKMQEANHDGYGIALRLMAFHPEAWKKMNWEEDYKEVQFE PDIRLKIERKGITF >gi|333606120|gb|AFDH01000066.1| GENE 72 55761 - 57038 931 425 aa, chain - ## HITS:1 COG:DR1362 KEGG:ns NR:ns ## COG: DR1362 COG0673 # Protein_GI_number: 15806379 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Deinococcus radiodurans # 4 407 5 398 403 270 37.0 5e-72 MAALTAVLLGAGSRGRYIYGPYAEKYPHELNIISVAEPDEGRRKLISRIHGIKPDYVYSS WEQAFERGKIADIMIISTLDRMHFVPAMKALELGYHVLLEKPMSPKLEECVQLVEAAKAH DRLLVVSHVLRYSLFWAGIKQHLDAGELGDIASVQLTENVGYAHMTHSYVRGNWRRAEET SPMILAKSCHDLDIISWLMGGECKSVSSFGSLFHFKKENAPAGSTDRCIEGCEVEKECPF SALKLYIQPPDHPWARYMTHDLSHEGIVKALKEGPFGRCVYRCDNDVVDHQVVNLEFAGG ATAAFTMSGFTQGGGRRVQIMGTRGEILGDMDTGSYTLHRFATGEAVEVRCNIAGDGHGG GDERMVASFLKDVREYGRVPAASRTSASASLQSHLMAFGAEESRLNGGKSVSLADFQRAS MAGIV >gi|333606120|gb|AFDH01000066.1| GENE 73 57152 - 58828 1375 558 aa, chain - ## HITS:1 COG:FN0189 KEGG:ns NR:ns ## COG: FN0189 COG4753 # Protein_GI_number: 19703534 # Func_class: T Signal transduction mechanisms # Function: Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain # Organism: Fusobacterium nucleatum # 1 140 1 139 261 95 36.0 3e-19 MYRLLIVDDIPIIVEGLKDLFEETTQLSLEIHTAYSGEEALGVLRNKRIDLVISDIKMPG LEGIGLLREIKTNWPSCKVIFLTGYNDFQYVQSAVKYGGFDYLLKIESDEKIIATVTRAI DKLDEEKAREEMIERAEESMKRALPSLQKEYVSSLLQGKRPAGEQLDRHFREIGIPLQGE EPVLLLLGRVDVWREMLTPPDKALFVYAVQNIAEEILSPGARVYTYVYDQVKIAWFIQPA ESSCPDTDVSRDGWDSTRRFVGNALETIQRACKNLLKLPVSFVVGKNPVPWDDISDKFHE LKYTFLFGAGLGNEIILTEPASDNHGETGHAQKRSEFFTAARVQLLGKCLENGHRCEFFN VYKEISDLWESDEWPFERKREVYHSLSAVFLAYVNKNDELRAYLNSNHDLSTLFHCEADT TVAALKAYFLQTAELIFDWNGEQAAHFPDELVQRVHTYIAANLAKDISLNAIADHVGLNP SYLSRLYKQMTGIGLSDYINDYRNLKAKELLLGSPMRVGEIASMLGYNSALAFIRFFKKQ NESTPQEYRSRRASGDSG >gi|333606120|gb|AFDH01000066.1| GENE 74 58842 - 60572 1775 576 aa, chain - ## HITS:1 COG:BS_yesM KEGG:ns NR:ns ## COG: BS_yesM COG2972 # Protein_GI_number: 16077762 # Func_class: T Signal transduction mechanisms # Function: Predicted signal transduction protein with a C-terminal ATPase domain # Organism: Bacillus subtilis # 27 573 25 570 577 122 23.0 2e-27 MKLNLSLQDSSIFKKIMAVFMAALIPIMAITWLINEKGSESIRQERSQSILNTTRYYLDS LDKEADRINRFLPNYVTDSDLQEIAAMGNELSDYDRSEKILGIQKRLNLTKDSSAFIQEV KAYVPLIQRTLLSVKYDTFVDWEEYEALQLRNKRADEPFIFWDDRLFLSMQVPSNSTREP LYVIGVELSTAKIRQSLAQISGSFGGETLLINTDRGWNFQSGNDPRLLTAAKAFIGEKSA EGNKQGYETITVGSDRYLAVYNYSALWNSYSVSCIPEKTLLGPIQTYRVWFRWACVLAVA VVLFFSFFLFRLIYRPLLKLVQSFRRVQQNRLELIPVDRGNDEFGYLYHAFNQTIHSLRE LIEQNYEQQIRSQRSELKRLQSQINPHFLYNCFFVLCRLIKSEHKEKAYQFCLYIGDYFH FITRNDEDEIPLSLEINHSRTYVDMQKVCYGDRIEAVFEVEEFDTRVPRLILQPIIENAY KHALGSTPGAGFLRIWSRMDAKGITIYVEDNGTTLTDEELGKLRRRLADGNHELEETTGL VNVHRRIQLRYGQGYGITVDRSELGGLKAGIHIGNS >gi|333606120|gb|AFDH01000066.1| GENE 75 60609 - 61493 810 294 aa, chain - ## HITS:1 COG:BH1066 KEGG:ns NR:ns ## COG: BH1066 COG0395 # Protein_GI_number: 15613629 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Bacillus halodurans # 1 294 1 293 293 300 55.0 2e-81 MRHNLTMGRRLFLIGNVVFLALISFACLTPIIHILAISLSSGAAASAGKVLLWPVDFTTA AYDNVFGKPEYLRAFWISVQRVVLGTAISMFLTILTAYPLSKDPRVFRMRTFYVWVFVFT ILFSGGLIPWYMTIKTLGLIDTVWALVLPGALPVFNVILLLNFYRSLPKELEESARIDGA GHFATLWKIYAPLSLPALATTGLFTVVGHWNSWFDGMILMNHPDKYPLQTFLQTIIINMD FRFIKAQDAELLVKLSDRTSKAAQIFVAAFPVLLVYPFLQRFFIKGIVMGSVKE >gi|333606120|gb|AFDH01000066.1| GENE 76 61506 - 62363 915 285 aa, chain - ## HITS:1 COG:BH1065 KEGG:ns NR:ns ## COG: BH1065 COG4209 # Protein_GI_number: 15613628 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type polysaccharide transport system, permease component # Organism: Bacillus halodurans # 1 285 33 317 317 322 57.0 5e-88 MVVPGLIIVIIFSYIPMAGIMMAFQKFIPSKGLFGSPFVGLKNFRFLMEYPDIGQIFFNT LFIATMKIAAGLIVPITIAILLNELSRQWIKRTFQTLVYLPHFMSWVLLSGILIDVLSPS SGIVNQLLGVFGMKPVFFLGDNAWFPYVMVVSDVWKEFGFGTIVYLAALTGINPSLYEAA EMDGAGRWKQTLYITLPGMMPIIVLMLTLNIGNVLNAGFDQIFNLYSPQVYESADIIDTF VFRMGVQQSQFGFATAVGLLKSIVSFVLISVSYLLAYRFANYRIF >gi|333606120|gb|AFDH01000066.1| GENE 77 62522 - 64147 1903 541 aa, chain - ## HITS:1 COG:BH1064 KEGG:ns NR:ns ## COG: BH1064 COG1653 # Protein_GI_number: 15613627 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Bacillus halodurans # 16 537 13 545 550 155 27.0 2e-37 MSRKNRHKGLLPAAVIAAMLTVTACSGTAPEEAKTPETGGVMEVSTVRASDPYLKFDPGE TFDNNAVYAAYEKETGVKIINKWVADGSQFAEKLKMSIASNEIPDFFPVDAAQLQQLIEA DMILDLTPVYDKVATENTKKMMTMDGGLQMKSATFDGKLMAIPSTSNPYYAQFLWVRTDW LKKLNLPEPKTMEDVAKIAEAFKTKDPGGTGKAYGLAFNKNLFDGALGITGFLNGYHAYT NQWLDDGTGKLQFGDVQPQMKDALRGLQDLYKKGLIDPEFAVKDATKASEMLYNDSIGMV YGAEWMPAQLASGAVKDGKVVQEWGVFPLPSSDGKPAKSQIGLGVDKYYVVSKKAKHPEA VIKLLNHWIVVNNSQSEESKVYEFGKDKVEKSSNYWLLNPIFVNNQTNNNGEVLPDAIAN KDESKLQTKDQKTRYGRAMKYVNGDTSLWWEYLISGPHGAVSLYPEMKKNNQFEQNKFYG APTPTMVEKGAILNKKRDEVFVKIIMNQVPVDEFDKFVADWKSMGGNEITKEVNDWYNKN K >gi|333606120|gb|AFDH01000066.1| GENE 78 64467 - 66212 1579 581 aa, chain + ## HITS:1 COG:BH2752 KEGG:ns NR:ns ## COG: BH2752 COG3290 # Protein_GI_number: 15615315 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase regulating citrate/malate metabolism # Organism: Bacillus halodurans # 382 578 333 528 532 86 28.0 1e-16 MSIKRLSALFLAVILAILLINDSVFYYSTKKSLTANMETELFSLSQQIQLSIDHVEYSSQ ARDKLLSDSLRQVSLGVKAALPSRYRDIDNSMLAELRVKYNVSNLTLFAQIGDEIVSVRS SDPKEINLNAKYWGNYRTALEQLFRLETVTVSEGTTLQSFWAGKISGSASNPGSKRNKFG FYYDGTTDYIINPTMNSSLIEQFDQNDGSEFIVAETLKNNKSLLEITGFNPRTFSKPDDD PSFYTVTNGSKNIRYSERKILFGQYNSRSPEDVSLIEQAVKLDKPIFFPTKINDKNVLKI FYPVKSERVQFPYVIGLVNDMEYIHNSLNKQLLNFFLVIVSVSIASLIMVYFIYKGVNRT KDAVAQTIQENYTDEMNSLMVAIKGQNHDFTNHLTTISCMVQLKKFEETKKYIHELVEET RLVNSIVHVGHPALASLISSKITQSQLRKINFTYELDLADDLTSISGLKSVDLVKILGNL IDNAFDEVSGMNVEQRNVHLLGYTEENQLIFKLSNHISKSLSEKDLQAMFTSGYSTKKDG VHKGLGLAIVNQLVQRYKGTVSAEISGANTIQFTVILPIYS >gi|333606120|gb|AFDH01000066.1| GENE 79 66320 - 66739 376 139 aa, chain - ## HITS:1 COG:SP1645 KEGG:ns NR:ns ## COG: SP1645 COG0317 # Protein_GI_number: 15901481 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Guanosine polyphosphate pyrophosphohydrolases/synthetases # Organism: Streptococcus pneumoniae TIGR4 # 4 137 28 178 740 60 32.0 1e-09 MSTLEKAIIVAARAHSGQTDKAGQPYILHPLRVMQSVQTTDARIVAVLHDVLEDSEISAE DLRREGFSPDIVEAVTALSREPGEDYLDFVRRAKKNPLAREVKLADVHDNMDMTRIKEPT SKDRERMRKYEAALHELNR >gi|333606120|gb|AFDH01000066.1| GENE 80 66958 - 67542 701 194 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_0439 NR:ns ## KEGG: GYMC10_0439 # Name: not_defined # Def: cell wall assembly/cell proliferation coordinating protein, KNR4-like protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 9 194 12 199 199 183 52.0 4e-45 MIKRHIDRLEQLLPLKVGEDRQEEYETYLKLEGAGEEQFAVLERKYGLTLPDDFKEFYRH KNGSGYHFHVLYPSYDEGAVSHFYLLSLEEIDELKAYFCSEDILLSEHFEEDEIARLDKR IRPYYSNRQWLPIAQLAGGSLYLMLDFDPSEQGRAGQVIAFVHDPDFIYYAADSFAELLD ISNKNLEDWEEIDY >gi|333606120|gb|AFDH01000066.1| GENE 81 67713 - 68543 223 276 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149913192|ref|ZP_01901726.1| 50S ribosomal protein L35 [Roseobacter sp. AzwK-3b] # 1 247 1 245 305 90 27 2e-17 MNLHALRIFYETAKSGSITGAAEALRISQPAVTSQIKRFEKEIGMRLFAARGRGISLTDA GRKLLEYARKLFALEEEMEAFIDGYTSGRNGAIRLVSTYLPANFLLPAWVAKFKRDHEEV DFVITTTNSRGAFDSLLNYEAEIAVYGGAGERQPGIHWEELFEDELWFVVPARHKYANEH ITLAEMVKEPFIMREEGSSTREWLFSLCRVHNVSPPQIALQFNGLNETISAVMAGYGTNF ISSLVVRDHVERGELARVYVKDIRLKKYHRGMYAYR >gi|333606120|gb|AFDH01000066.1| GENE 82 68662 - 69381 878 239 aa, chain + ## HITS:1 COG:BH1828 KEGG:ns NR:ns ## COG: BH1828 COG4122 # Protein_GI_number: 15614391 # Func_class: R General function prediction only # Function: Predicted O-methyltransferase # Organism: Bacillus halodurans # 23 237 7 221 223 265 58.0 6e-71 MTLSNESSEVRNEPARPDLSGKWSHVDACLNEWLVPADPVMTEVLANNARAALPPIDVAP NQGKLLHLLAKIQGARSILEIGTLGGYSTIWLARALPEDGKIVTLEYDPHHAETARQNLS QAGVSHLVDVRVGEALGSLEQLYAEGAGPFDLIFIDADKPNNPEYFKWALKLSRPGSLII GDNVIRDGEVANPHSEDPRVQGVRTFLELIAAEPRVTATALQTVGSKGYDGFVLALVTA >gi|333606120|gb|AFDH01000066.1| GENE 83 69499 - 70230 581 243 aa, chain - ## HITS:1 COG:no KEGG:PPE_02201 NR:ns ## KEGG: PPE_02201 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 6 236 11 244 287 216 47.0 7e-55 MGGYATKQNVSDSLLKHGEIRRNVPETRLYSKGTLKTMLDTYKMVYVKPNSGTGGSGVIR VERKEDGYSFQLHTFVEKFRDFDSMATALRRRTKKSPYVIQQGIHLLRHKGRLFDLRIMI QKNPRGVWEPTGIIGRTGHPRKIVTNLCRGGSSKPVEVLLKEHVADIKRYKASLRSLGLR AARHLNKTFPRIKEVGLDVGLDPNLHPWILEANPRPKIQGFKTLKDKSIYRKMLRYQNYY GHA >gi|333606120|gb|AFDH01000066.1| GENE 84 70558 - 73296 2404 912 aa, chain + ## HITS:1 COG:slr1759_4 KEGG:ns NR:ns ## COG: slr1759_4 COG0642 # Protein_GI_number: 16329648 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Synechocystis # 500 740 9 259 270 229 47.0 2e-59 MKPFDDKWLFEIAYENAPFAMGVYSLAEDRWLRVNPSFCRMLGYTEEELAKLSDRRITYP EDIALSCADPSLSHFEKRYVRKNGEIVWAAVGLSPLPAESAKSAALLVQAVDLTANKMRE EQLLDSERKHRLITEASLDWISRHEPDELATMTYSSPICRTIFGYEPEEMVGQGALPLIH PEDQDRVVLFLEQNRNTEGDKVTFRFRCKSGDYVWLESTTRYTYDKDGNLNEIISISRDI TERKKADQQLQESEQRYKSLFDHNPAAVYSMNLDGDYLTANKNLQKITGFTLEELIGMYW GPIVAPKDLPKTLHHFELAKQGFPQSYDLTLIHKDGHPVEINSTNIPIIVDNEVVGVYGI TIDITERQRYLAQIEKLSSEYTLILNSVTEGIFGVDSSGNAMFINPAGAEMLGFVPEELI GKPYLGMLQNTFGTPAQQSEDEQVIYRAIREGRSYHNKEAVFWRKDGSSFLADYHVTPLI DNGELRGAVVVFKDITGEKEIIRAKESAEKADQAKSEFLAIMSHEIRTPMNGIIGMADLL AETELSEEQQSYADIILQSSYALLRILNEILDFSKIEAGKMVVNHEPFDVRSVLDHVVEL FHPKAAERGIRLTYELDGGIPSTLIGDEGILRQIIVNLVGNAIKFTEKDGHVSLSAKLDK MPGRSDAVLQFSVRDTGIGIPADKQSQLFQSFSQLHPTINRKYGGTGLGLAICKKLVELL GGAIGVDSQVNVGSTFHFVLPFELPGESPAPYSVPEKTQRSKPAPASTLVSDRESGALPP PEFGPMKLLVADDNPVNRLLLITLLKKLGYEADYAENGAEALKAVLSDTYDMVFMDLQMP EMDGFETTAAIRRLKGDASRPAIVAVTAFAQKEDMQMCLASGMNDFISKPVFAPEVERVL KIWSPHRKQDQT >gi|333606120|gb|AFDH01000066.1| GENE 85 73474 - 73917 414 147 aa, chain + ## HITS:1 COG:no KEGG:BMB171_P0159 NR:ns ## KEGG: BMB171_P0159 # Name: not_defined # Def: transcriptional regulator MarR # Organism: B.thuringiensis_BMB171 # Pathway: not_defined # 5 146 9 150 150 116 51.0 3e-25 MDERLYQTVKEINEAEYTANLLLLQEYNELLQADLTSKQAVVLEHIHKHKRLTVKELADL MLITSSAVSQLIGKLDKEGYLKREINPNNRREILVELDQAGWDYFERQQKVEKSIAERFY SKLDPEELSALRKITFKLQKIIEAELR >gi|333606120|gb|AFDH01000066.1| GENE 86 74013 - 75219 1078 402 aa, chain + ## HITS:1 COG:BS_pbpE KEGG:ns NR:ns ## COG: BS_pbpE COG1680 # Protein_GI_number: 16080497 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Bacillus subtilis # 2 402 3 401 451 389 47.0 1e-108 MQNKQKQLQELFTAMSAKGIFNGAFLAADKGEIVFEGAYGLADRETGRSLTVHSVFELAS VSKTFTAMGILILAEQGKLSLSDSVEQWIPNFSYKGITVKDLLRHTSGLPDYTPLFIKDW DRSKIATNWDVLEYFNVHQPPLQFQPGENWEYTNTGYVLLALLIEKISGLSFADYMSETL FKPLGMHSTRIHNRRLSGNVPPDFAFGYVYSFETHSYHLPDEQPATDFVVYLDGIQGDGT VNSTLHDLLLWDQALYTEKLVSKKTLDEAFTSGKLPDNKPYSYGYGWIIEQKEHLGKVVS HSGGWPGYSTNLARYTDHGKTTIYLSNTDRQPDIQQQIINEAENILFGLPHSVPDVPAEL KSVKIDKTVYTLYRGVYKMDMGLDLSVTTGPEQDQLFIQLSG Prediction of potential genes in microbial genomes Time: Sun Jul 17 09:19:08 2011 Seq name: gi|333606077|gb|AFDH01000067.1| Paenibacillus sp. HGF7 contig00054, whole genome shotgun sequence Length of sequence - 40660 bp Number of predicted genes - 44, with homology - 38 Number of transcription units - 32, operones - 7 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 269 79 ## - Prom 290 - 349 3.2 2 2 Tu 1 . - CDS 541 - 1551 592 ## PFL_3828 hypothetical protein - Prom 1590 - 1649 2.3 - Term 1589 - 1624 -0.6 3 3 Tu 1 . - CDS 1674 - 2246 262 ## gi|329927471|ref|ZP_08281695.1| conserved domain protein - Prom 2462 - 2521 4.8 - Term 2561 - 2620 1.4 4 4 Tu 1 . - CDS 2692 - 3372 636 ## COG1309 Transcriptional regulator - Prom 3395 - 3454 3.6 + Prom 3387 - 3446 6.5 5 5 Tu 1 . + CDS 3511 - 4863 994 ## COG0534 Na+-driven multidrug efflux pump - Term 4859 - 4926 14.2 6 6 Tu 1 . - CDS 4941 - 5303 290 ## - Prom 5332 - 5391 2.6 + Prom 5775 - 5834 5.2 7 7 Tu 1 . + CDS 5876 - 6844 801 ## COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component + Term 6914 - 6975 5.2 8 8 Tu 1 . + CDS 7479 - 7697 74 ## 9 9 Tu 1 . - CDS 8373 - 9374 371 ## COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases - Prom 9400 - 9459 9.8 10 10 Tu 1 . - CDS 9631 - 9756 91 ## - Prom 9793 - 9852 6.8 - Term 10021 - 10067 13.3 11 11 Tu 1 . - CDS 10160 - 10819 490 ## COG0778 Nitroreductase - Prom 10870 - 10929 5.6 - Term 10915 - 10952 1.2 12 12 Tu 1 . - CDS 10960 - 11367 330 ## COG1959 Predicted transcriptional regulator - Prom 11425 - 11484 2.1 13 13 Tu 1 . - CDS 11836 - 12411 175 ## COG3182 Uncharacterized iron-regulated membrane protein - Prom 12631 - 12690 4.0 - Term 13513 - 13554 10.2 14 14 Op 1 2/0.000 - CDS 13585 - 14496 505 ## COG0492 Thioredoxin reductase 15 14 Op 2 9/0.000 - CDS 14549 - 15448 595 ## COG0500 SAM-dependent methyltransferases 16 14 Op 3 . - CDS 15470 - 15727 285 ## COG0477 Permeases of the major facilitator superfamily - Prom 15750 - 15809 4.5 17 15 Tu 1 . - CDS 15842 - 16078 175 ## COG2318 Uncharacterized protein conserved in bacteria - Prom 16103 - 16162 1.8 18 16 Tu 1 . - CDS 16373 - 17005 306 ## COG3828 Uncharacterized protein conserved in bacteria - Prom 17105 - 17164 9.2 - Term 17109 - 17166 -0.6 19 17 Tu 1 . - CDS 17177 - 17578 137 ## COG1959 Predicted transcriptional regulator - Prom 17606 - 17665 6.5 - Term 17583 - 17615 1.0 20 18 Tu 1 . - CDS 17709 - 18056 116 ## COG0346 Lactoylglutathione lyase and related lyases - Prom 18299 - 18358 6.9 + Prom 18263 - 18322 4.7 21 19 Tu 1 . + CDS 18346 - 19203 275 ## COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family + Term 19237 - 19268 -0.7 - Term 19195 - 19233 1.0 22 20 Op 1 . - CDS 19365 - 19817 -87 ## COG0645 Predicted kinase 23 20 Op 2 . - CDS 19881 - 20606 245 ## gi|229156075|ref|ZP_04284174.1| metal-dependent membrane protease - Prom 20779 - 20838 4.3 - Term 20806 - 20845 4.4 24 21 Tu 1 . - CDS 21003 - 21155 127 ## 25 22 Tu 1 . - CDS 21277 - 23178 411 ## COG0642 Signal transduction histidine kinase - Prom 23359 - 23418 4.4 + Prom 24484 - 24543 6.8 26 23 Tu 1 . + CDS 24650 - 24736 94 ## + Prom 24803 - 24862 4.7 27 24 Tu 1 . + CDS 24895 - 25359 137 ## COG3708 Uncharacterized protein conserved in bacteria 28 25 Tu 1 . - CDS 25458 - 25967 114 ## COG0645 Predicted kinase - Prom 26051 - 26110 3.4 - Term 26414 - 26448 5.0 29 26 Op 1 . - CDS 26506 - 27591 353 ## COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase - Prom 27665 - 27724 1.9 30 26 Op 2 . - CDS 27767 - 28198 278 ## pE33L466_0361 multidrug resistance efflux protein - Prom 28237 - 28296 3.2 - Term 28200 - 28233 0.5 31 27 Op 1 45/0.000 - CDS 28362 - 29129 532 ## COG0842 ABC-type multidrug transport system, permease component 32 27 Op 2 1/0.500 - CDS 29130 - 29900 396 ## PROTEIN SUPPORTED gi|90020817|ref|YP_526644.1| ribosomal protein S16 33 27 Op 3 . - CDS 29914 - 30780 702 ## COG1357 Uncharacterized low-complexity proteins 34 27 Op 4 . - CDS 30794 - 31123 263 ## COG1695 Predicted transcriptional regulators - Prom 31305 - 31364 5.4 - Term 31338 - 31364 -1.0 35 28 Op 1 . - CDS 31431 - 32147 542 ## gi|329923356|ref|ZP_08278840.1| conserved domain protein 36 28 Op 2 8/0.000 - CDS 32144 - 33016 518 ## COG1131 ABC-type multidrug transport system, ATPase component 37 28 Op 3 . - CDS 33019 - 33381 276 ## COG1725 Predicted transcriptional regulators - Prom 33473 - 33532 5.0 - Term 33506 - 33541 4.0 38 29 Tu 1 . - CDS 33564 - 34325 355 ## COG3967 Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) - Prom 34383 - 34442 4.7 - Term 34993 - 35034 6.5 39 30 Op 1 3/0.000 - CDS 35057 - 36043 567 ## COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component 40 30 Op 2 . - CDS 36114 - 36959 94 ## COG2207 AraC-type DNA-binding domain-containing proteins - Prom 37202 - 37261 8.1 41 31 Tu 1 . - CDS 37294 - 38217 121 ## COG4974 Site-specific recombinase XerD - Prom 38360 - 38419 9.1 - Term 38327 - 38364 8.0 42 32 Op 1 . - CDS 38509 - 39249 126 ## PPE_04788 YheD 43 32 Op 2 . - CDS 39265 - 40377 587 ## COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase 44 32 Op 3 . - CDS 40374 - 40658 163 ## PPE_04790 3-phosphonopyruvate decarboxylase (EC:4.1.1.-) Predicted protein(s) >gi|333606077|gb|AFDH01000067.1| GENE 1 2 - 269 79 89 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLALKFICTWVLLVASCSAVWWSFKTEKLITVSWLAFLLPAVFQLAAAFRIGPGKAKSLI VFGCINLVFTALVGVAVWYLVQLANAYKR >gi|333606077|gb|AFDH01000067.1| GENE 2 541 - 1551 592 336 aa, chain - ## HITS:1 COG:no KEGG:PFL_3828 NR:ns ## KEGG: PFL_3828 # Name: not_defined # Def: hypothetical protein # Organism: P.fluorescens # Pathway: not_defined # 20 334 20 334 342 127 31.0 8e-28 MRKIWKRRILINNPVALDQAQIEQDLRGGNQVIVQFSHPEFYGSILEEVDELCARWDEDF GVRFYAHYSLSFDCHTLLRVPHVKMLQLNSLVQAHNTEALAKLDNLSSLSLGIYELENSE ILGIDTLRSLKILNVISDKKVLNLHYFKEFSYLEELHVGGKVKNLDAIGYLEDLNYLALH SISKLPLHFINRLRKLKHLRILLGGREHIQEIEENTIENLEISRVRGFHDLTNITAFQAL KRLVIEDQIKLQEISFDQEMKALEELSIRNCKGLTRLMGMEQLPLLHKLRIFKTAIDFDS FINQKLPSSLSSVEFATFKSKADQEIQQSLLKLGFQ >gi|333606077|gb|AFDH01000067.1| GENE 3 1674 - 2246 262 190 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|329927471|ref|ZP_08281695.1| ## NR: gi|329927471|ref|ZP_08281695.1| conserved domain protein [Paenibacillus sp. HGF5] conserved domain protein [Paenibacillus sp. HGF5] # 1 190 1 194 195 227 64.0 3e-58 MGRSFANLHIKSKNLEKTVEALRELSEAHGNVLGKPNNEAQEIKDVMYVSKSNENWVSVL HDYFVWGTVKEVGKTLSRLIEGPVMTAAYMNEEIFELSFFENGDIGGERIFCEQWTRDEY EQLKEERLNDDYLRKALDIRNEDFDGFISITSPAQAVDKLSELVRMSLWSDSEWIPHEET LRERFEKYEF >gi|333606077|gb|AFDH01000067.1| GENE 4 2692 - 3372 636 226 aa, chain - ## HITS:1 COG:L154512 KEGG:ns NR:ns ## COG: L154512 COG1309 # Protein_GI_number: 15673496 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Lactococcus lactis # 7 222 4 206 208 98 31.0 9e-21 MKKQQPQISEDKILETSWELLGEGGIEKFSMRRLADRLGIQAPSLYWYFKSKQDLYQRLA NQVSKIILEEFRSEGDWKEQLTGLAVTVRSVLSRYPCSTQLMMMTLPHEPDIIRFTNRML LCVESTPLDHEQKMQVVLTLVNYVYYFVLDDYQHERNVSAILKDQGALPGEEMIRLLDSM SESEAGLFRRMFTNGLFELMGTDGAFEFGLKLILLGIEQVIKEQEK >gi|333606077|gb|AFDH01000067.1| GENE 5 3511 - 4863 994 450 aa, chain + ## HITS:1 COG:SA0323 KEGG:ns NR:ns ## COG: SA0323 COG0534 # Protein_GI_number: 15926036 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Staphylococcus aureus N315 # 1 450 1 450 451 354 48.0 2e-97 MDAENLHYFEKAPIAKAVAHFAVPMMLGTSMSVIYSILNAYFLGTLGNTAMLTALALTLP LFAAIMALGNLIGMGSGTFISRLLGEKKVEDVKHVSSFAFYSSLVLGVIVMAVGLPLIDP IVHGLGATPDSFGFTKDYVTIMLMGSPFVVLFFTLENIVRSEGAAITSMIGMILSVVVNI ILDALVIFVFHWDVIGVASATVISNLVASAFYAFHMKDKSPFLTVSVKWFKVTKDILSNV IKIGVPVFIMSIFLGAMSLIFNHFLVEYGDQSVAAYGISSRLLQFPEFILMGLCEGVVPL IAFSFTANKLRMKHTIGFTIKVIVALAVLFGIIVYLISGHLIGLFTNDPQLIEMGSYILH VTFLSLFITGMTTLFTGIFQATAQGTAAFIMSVIQGITLIPVLYIANRMNGFHGVVWSLV IADAVAFLVGAIMLYALRNKLKPDLDHLVQ >gi|333606077|gb|AFDH01000067.1| GENE 6 4941 - 5303 290 120 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGVGMKTSFDEEMFVLLFRNWKRNAPAALIHSILTKDRKIRQLIYKSICDYFDELLASRR NEPGGNGEGALHFHGLYAGKSLSSIVHMMLIEWTLNDFHLTPEQIGSVVSDLTASIRAYL >gi|333606077|gb|AFDH01000067.1| GENE 7 5876 - 6844 801 322 aa, chain + ## HITS:1 COG:BS_yfiY KEGG:ns NR:ns ## COG: BS_yfiY COG0614 # Protein_GI_number: 16077911 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-hydroxamate transport system, periplasmic component # Organism: Bacillus subtilis # 5 319 2 323 325 271 46.0 1e-72 MGKSKKWMALSLLLLISLLVAACAKPNASQPQEEKNSGAPVRTIKHAMGDTPITGTPQRV VVLTNQGTESLLELGIKPVAAVKSWIGEPWFDHIKDKMDGVKVIGDETQPNLELIASLKP DIILGTKVRHEKIYPQLSAIAPTVFTENLGDSMIENFELYAKALNKEAEGKAALDSYNKA IEQTKAALGDKTKMRVSLARFQPGKVRVYYKNNFAGVVLEQLGFARPEAQNKDKFTDDLT TEQMNVLDGDVFFYFTSDRNGETDASKTADEWLKSPLGQNLNVVKKQRTFNVDEAVWNTS GGIIAAKLLVEDIKVRFEKLSL >gi|333606077|gb|AFDH01000067.1| GENE 8 7479 - 7697 74 72 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MDFKLSFAETALESPVINAVVALAGATEINKAEERIVAEVTNFEKVFSFCNTPFLGIHNE FHKLPQLYYSNT >gi|333606077|gb|AFDH01000067.1| GENE 9 8373 - 9374 371 333 aa, chain - ## HITS:1 COG:AGpA656 KEGG:ns NR:ns ## COG: AGpA656 COG0604 # Protein_GI_number: 16119675 # Func_class: C Energy production and conversion; R General function prediction only # Function: NADPH:quinone reductase and related Zn-dependent oxidoreductases # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 1 330 26 355 359 327 49.0 2e-89 MKAMTIKKYGKNVPLIMTEQPMPNIGEQDVLVEIHAASLNPIDYKIKEGKMKLLLNYSFP LILGNDFSGVVVKVGSRVKTFKPGDEVYGRPRKNRIGTLAEFIAVHEEDIWLKPQNLTFE EAASIPLIGLTTYQAFVDILNLQKGQKILIHAGSGGVGTFAIQLAKLMGAYVATTASEKG YELVKSLGADLIINYKKENFEEMLTGYDAVFDTLGGETLEKSFRILKPGGQIVSVSGMPN ARFGKEAKLGWLKTTILSIVSRKIKVQEKKSQTRYHFLFMKPSGEQLKVIKEFIEGGFIK PTIDKVYRLEDTGQAIDYLESGRAKGKVVIRIK >gi|333606077|gb|AFDH01000067.1| GENE 10 9631 - 9756 91 41 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSQQTEDLLQQFKDCIPLLEVLTDENRYYYAVSTEQTGIQC >gi|333606077|gb|AFDH01000067.1| GENE 11 10160 - 10819 490 219 aa, chain - ## HITS:1 COG:BS_ydgI KEGG:ns NR:ns ## COG: BS_ydgI COG0778 # Protein_GI_number: 16077633 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Bacillus subtilis # 14 210 7 205 209 199 52.0 4e-51 MSVSQPSLTVEQQFFDVIKDRRSVRSYDPEVKISREQINEILQQATLAPSSANLQPWRFL VIDSPELKQKLLPIAYNQQQVIEASAVIAVLGDRETYKLAEKIYGMAVDAGHMDAETAKS FVERYQGIFKSMPPENIRRIVSIDGGLVSMQLMLVARAKGYDTVPMAGYDEAKFVEAFHI SERYAPVMLIAIGKAAKPGHPTVRLPIEDVTFYNEMPKA >gi|333606077|gb|AFDH01000067.1| GENE 12 10960 - 11367 330 135 aa, chain - ## HITS:1 COG:RSp0526 KEGG:ns NR:ns ## COG: RSp0526 COG1959 # Protein_GI_number: 17548747 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Ralstonia solanacearum # 13 135 6 132 143 67 35.0 5e-12 MISNRGTQIGPPRFGVAVHALILLAQCEGMLSSAVIAGCVQSHATFLRRVLAQLTHAGIV EAREGRGGGYYLKRRPDQITLADIFMALKSDCCEQGGEPDCAAGLQIDAKLEAIMGEVQN QTVELLKQHTLADLM >gi|333606077|gb|AFDH01000067.1| GENE 13 11836 - 12411 175 191 aa, chain - ## HITS:1 COG:SA1275 KEGG:ns NR:ns ## COG: SA1275 COG3182 # Protein_GI_number: 15927023 # Func_class: S Function unknown # Function: Uncharacterized iron-regulated membrane protein # Organism: Staphylococcus aureus N315 # 11 183 270 442 446 196 51.0 2e-50 MDNTSNPSGMITVQQLMNEVKQADISKPYSIIYPKNEQGVYTVSKGSNTGVTGLDVSPYD EVTTYFDQYSGKMISKVGFEDYGILAKWFTWGIPLHEGHLFGWPNKVLNLVVCLSFLLVI FWGFRTWLTRKKKNSLSAPPNLSSKLSVGFIIFMLLLGCMMPLFGISLILVVLIEIILSF KKKFQNVNITK >gi|333606077|gb|AFDH01000067.1| GENE 14 13585 - 14496 505 303 aa, chain - ## HITS:1 COG:BH0657 KEGG:ns NR:ns ## COG: BH0657 COG0492 # Protein_GI_number: 15613220 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Thioredoxin reductase # Organism: Bacillus halodurans # 3 301 5 303 305 434 67.0 1e-122 MNKVDVAIIGGGPAGLSAGLMLGRARKQTIVIDAGRPRNAVTREAHGFLTRDGISPGEFR RIAQEQLRVYPSVSQAEDTVVSISGEDGSFLLETATGMKIASKKLLFAAGMKDRKLEIPG LAEVYGKSAFVCPYCDGWELRDEPLVVISRGAALMHFAPLLSGWTKRFVVCTNGPDELSQ AERDELRDHGIPLFDTPIRAIISSEGMVNHVVLEDGTEIPCTGIFFKSELVPGTDLPQSL GCRISDAGVIAVDEFGKSSVPGVYAAGDASSLMHQSIAAAASGAVAAAAINGELNQEAWQ KTQ >gi|333606077|gb|AFDH01000067.1| GENE 15 14549 - 15448 595 299 aa, chain - ## HITS:1 COG:MA0841 KEGG:ns NR:ns ## COG: MA0841 COG0500 # Protein_GI_number: 20089725 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Methanosarcina acetivorans str.C2A # 41 243 55 246 302 75 25.0 2e-13 MRNELFDSAVWEKAWKEDPYTGVNKMKRAGIDPAHSLDSAAKSFNKEVFSEEGRRRTRRI MNWLEDQGVEFPGSSVLDIGAASGGFSVPFAERGADVTAVETSRPLVELLEQNSSGLTNG TVKVVNEPFENIDLEARGWERAFDLVFVSMCPVLVDWASVERVLSCAKAFCYMSLSVGSR KHSLVDEVWPLVTDRPRETEHLEMIYLTQLLLLKGYSYQSLVTQEMKTTTVSKETAFKDT INWLNMYGIAADERVRHIVSRHLDTRYPGEQVEIRQGGRFGKVLVRLQSQHMYDREDRM >gi|333606077|gb|AFDH01000067.1| GENE 16 15470 - 15727 285 85 aa, chain - ## HITS:1 COG:BS_lmrB KEGG:ns NR:ns ## COG: BS_lmrB COG0477 # Protein_GI_number: 16077336 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus subtilis # 7 81 4 78 479 90 69.0 7e-19 MQAVTTEAQHSAVQKYKVIPIMVSLLLSGFIGMFNETALNVALSDLINLFHITAATAQWL TTGYLLTLGILVPVSCFLLNFKPVL >gi|333606077|gb|AFDH01000067.1| GENE 17 15842 - 16078 175 78 aa, chain - ## HITS:1 COG:BH3685 KEGG:ns NR:ns ## COG: BH3685 COG2318 # Protein_GI_number: 15616247 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 3 78 82 161 168 62 38.0 3e-10 MREVFKKADVLVDEFLGDFKNKWDPSVQAPWQSDSVELTELWLFTHTITHEFHHRGQMLK MGRQLGYIPPKMNLAKPK >gi|333606077|gb|AFDH01000067.1| GENE 18 16373 - 17005 306 210 aa, chain - ## HITS:1 COG:AGl3146 KEGG:ns NR:ns ## COG: AGl3146 COG3828 # Protein_GI_number: 15891690 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 22 206 14 213 213 70 26.0 2e-12 MKAIALGQYEGAKYHPFTHIDHELQTIFEPVMDVECTDDYAVLQEDKLKGYDLFISYTDF SDLEIPEDQVQALLSYVKNGGGLLVIHNGISLQRSEELEKLIGGRVTGHPEYTSLPIRYH QGSHPIVENLSDFAIDEEPFRFELSPHESAVILAEYDHDGQRWPAAWAHTYGSGRVVYLM PGHHLPSFRVESVRKLIRNSGMWAAQRFVE >gi|333606077|gb|AFDH01000067.1| GENE 19 17177 - 17578 137 133 aa, chain - ## HITS:1 COG:BH0656 KEGG:ns NR:ns ## COG: BH0656 COG1959 # Protein_GI_number: 15613219 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Bacillus halodurans # 1 129 1 129 132 202 75.0 1e-52 MKYSKATDYALHTMLFLTAATPQKPIGVQQLAERQSVSPTYLSKILTKLVKAGMIESITG VNGGYRLKRNWENISFLDIIHAIEGSASLFDCSFEHGPGCPIQKVVLSAEEKMEEQLRSQ KMSDLVRELNIVI >gi|333606077|gb|AFDH01000067.1| GENE 20 17709 - 18056 116 115 aa, chain - ## HITS:1 COG:CC2142 KEGG:ns NR:ns ## COG: CC2142 COG0346 # Protein_GI_number: 16126381 # Func_class: E Amino acid transport and metabolism # Function: Lactoylglutathione lyase and related lyases # Organism: Caulobacter vibrioides # 2 114 4 117 125 73 30.0 1e-13 MIKGFGGIFWRTKNMEVIKKWYSEVLQIEIANWNGTVIKPQSGNKTIFSFFTENDDYFPT EQQVMLNFEVHSLDETIKHLEHIGVPLAKKKEVSEFGKFIWIEDPEGRLVELWEK >gi|333606077|gb|AFDH01000067.1| GENE 21 18346 - 19203 275 285 aa, chain + ## HITS:1 COG:BH0654 KEGG:ns NR:ns ## COG: BH0654 COG0010 # Protein_GI_number: 15613217 # Func_class: E Amino acid transport and metabolism # Function: Arginase/agmatinase/formimionoglutamate hydrolase, arginase family # Organism: Bacillus halodurans # 1 285 1 304 304 474 79.0 1e-133 MTKKTIRLLMPQWQGGNNPNYSFGAELLAWLAPDNDQPLIHVPVQAYDGIPLENENGTYG RQQLLEQLEAAHHIIESHKPDRIVMFGGDCLVEQAPFAYLNERYNGELSLVWIDAHSDLG RIVGYDYGHTLPLGNLLGEGDEEFAKHVKIPLNPKNVFIAGINVQTDLDTEIIQRLGIKT AETQELMNSTISIKEWIKQSNIKHLAIHLDLDVLDPKAFRSLLFANPEAPYEFSAAGTMQ MSGLLNLIKELSEETDVVGLGITEHIPWDSINLKKLLGEIPILNE >gi|333606077|gb|AFDH01000067.1| GENE 22 19365 - 19817 -87 150 aa, chain - ## HITS:1 COG:DR0609 KEGG:ns NR:ns ## COG: DR0609 COG0645 # Protein_GI_number: 15805636 # Func_class: R General function prediction only # Function: Predicted kinase # Organism: Deinococcus radiodurans # 7 88 75 156 162 84 51.0 7e-17 MKEESFLFYIFCGLPGTGKSTLSSALARELQTTYLRVDVVEQAMRVAGTWDDGPAGYIVC YAIASQNLRLGLDVIADTVNPIHETRAADIPGFVPSTGEKVRNRHYDVWDREHIVIDTAH QTAAESLMTLRELLDRERSKMELIERTDVS >gi|333606077|gb|AFDH01000067.1| GENE 23 19881 - 20606 245 241 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|229156075|ref|ZP_04284174.1| ## NR: gi|229156075|ref|ZP_04284174.1| metal-dependent membrane protease [Bacillus cereus ATCC 4342] metal-dependent membrane protease [Bacillus cereus ATCC 4342] # 1 229 28 256 266 202 48.0 2e-50 MLGIIVIVLLSWLLLRFTIRQPLSVLGYNPMGLRLRQFGIALLIGLVVCAVVKWTESLIT SAGWEVNSGYRWTDLFAAGWWNFKSVWFEELLFRGALLVILIRWLGARPGIVLSAAAFGA YHWFSHGLFGNIPVMIFMFAATFVMGLVWAYAYSKSDSMAIAAGSHLGWNATSAILFSDS PIGDQLFIPFKGTEYVPLTGLPSLLFFIASNTALPFILFLWIKYKIRKSTRGETAFFSDK E >gi|333606077|gb|AFDH01000067.1| GENE 24 21003 - 21155 127 50 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTGNIDTNIELKAKLVIEEITHSDMVLVHFKAPDLNGHDNEPLEKALAVQ >gi|333606077|gb|AFDH01000067.1| GENE 25 21277 - 23178 411 633 aa, chain - ## HITS:1 COG:BH1547_1 KEGG:ns NR:ns ## COG: BH1547_1 COG0642 # Protein_GI_number: 15614110 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Bacillus halodurans # 5 242 55 292 329 281 56.0 4e-75 MHANTKELAATLQRMNDHKDQFLANTSHEFKNPLHSMLNMSQSVLKRERHLLQERSIKEL ETILSVGRRVTLIINDLIDVMSLREGNPRILKRVLFIQPIVTGVLDMLQLNAEVKSVHIA NQIPEDFPPVHADENRVTQIIFNLLHNAVKYTNDGDISIRAFVKEERAYIVIADTGIGMD ENMLKRLFRPYEQASTSETMIEGGFGLGLSISKQLVELHGGTLVVSSVVGEGSTFKFSLK LADLEVEEENDRTSSLEPFPLRSMPIQENAWINGEKADIPSAVKPTILSEVHRDRPHLLI VDDDPINLQVLETILPPEEYEVTLVTSGKEALAVLDTKEWDLVISDIMMPQMSGYELTRI IRKRFTLTELPILLLTARSQPKDIQSGFLAGANDYVTKPVEAIEIKSRIEALTTIKQVVR EQLQLEAAWLQAQIQPHFLFNALNSVIALSDINLEKMGNLLHELSNFLRNKFKFENPNGL VPIEEELSLVRSYLYIEKIRFEDMLQIIWEIDDYGELKIPFLTIQPLVENAIRHGVMKRT RGGKIVIRVSVYDTHAEITVEDDGIGMDKDQLQRILERKADSSSGVGLINTDQRLKRHFG TGLEIHSTVDTGTKVTFRVRNRTSSGDTIDPLN >gi|333606077|gb|AFDH01000067.1| GENE 26 24650 - 24736 94 28 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNWVESLQTAIQYMEDHLLEDRTIFSLL >gi|333606077|gb|AFDH01000067.1| GENE 27 24895 - 25359 137 154 aa, chain + ## HITS:1 COG:lin0485 KEGG:ns NR:ns ## COG: lin0485 COG3708 # Protein_GI_number: 16799560 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 153 1 155 159 105 36.0 2e-23 MNYKIVEQAGFSLVGIKKSFSYVDGEHLSGIPNMWQEVYTSGTEDRLFHLNNGVIKGLLG VCVDQNEIQEKQMEYWIATTYDGEVPEGLSTLLIPSSKWSVFEVEGPLPASMQSLWKQII SEWFPSNPYEHAGIPELEVYPGPNHPPQIWIPIK >gi|333606077|gb|AFDH01000067.1| GENE 28 25458 - 25967 114 169 aa, chain - ## HITS:1 COG:SMc02847 KEGG:ns NR:ns ## COG: SMc02847 COG0645 # Protein_GI_number: 15963925 # Func_class: R General function prediction only # Function: Predicted kinase # Organism: Sinorhizobium meliloti # 1 126 1 120 122 100 44.0 2e-21 MLYIFSGLPGTGKSTLSSALAREIQATYLRVDVVEQAMRVAGTWDDGPAGYIVCYAIASQ NLRLGLDVIADTVNPIHETRQAWRDVAESLETPFVEIEVICSDDREHRHRVESRVADIPG FVLPTWEKIRNRQYDVWDRDHIVIDTAHQTVAESLMTLSELLDRERRKG >gi|333606077|gb|AFDH01000067.1| GENE 29 26506 - 27591 353 361 aa, chain - ## HITS:1 COG:CAC2716 KEGG:ns NR:ns ## COG: CAC2716 COG1819 # Protein_GI_number: 15895973 # Func_class: G Carbohydrate transport and metabolism; C Energy production and conversion # Function: Glycosyl transferases, related to UDP-glucuronosyltransferase # Organism: Clostridium acetobutylicum # 2 338 36 367 407 194 34.0 3e-49 MCTEEYRSRIEQTGAQVLTYPFPQDAFSHDPVLKPQEYKHPYPFIYMMVGGIIRRMIPEV LRVIENQRFDYLIFDSLMGWGGTILAEKLGIPAVCSIASFAFVEPLGTDQGFNEKETDTK ELYEATMKITRELAQEFQVSIPAMEEISAHAGRLKLVYTSRYFQPQAEKLDDSFIFAGPS IIPRQDAPDFPFELLRERFPQTVYIAMGTILNKNLDFYRLCFEALGNLPVNVVLSSGKYT DMEPLADRIPTNFIVKTYVAQLDMLQHTDVFITHAGMNSTSEALYYNVPLVMIPLTSDQP LVANRVQELGAGITLDKHNLSPTVLREALSEVLSNPLYKQPASPDNNKHGDQQAKLTNPG E >gi|333606077|gb|AFDH01000067.1| GENE 30 27767 - 28198 278 143 aa, chain - ## HITS:1 COG:no KEGG:pE33L466_0361 NR:ns ## KEGG: pE33L466_0361 # Name: ebrB # Def: multidrug resistance efflux protein # Organism: B.cereus_ZK # Pathway: not_defined # 7 125 337 455 468 113 52.0 3e-24 MQVRTLIGIMIAGTVLVILALMLSGGGIILILLSQMITGFGVGLANPTTGAIALQHAEPG KEGEMSATLQFVDSFYMGVSIGVCGALIALAETLQWGISAGVLVVLTLQLVFVLISFLAS LRITELVHQEHQPMSHAKDKLPM >gi|333606077|gb|AFDH01000067.1| GENE 31 28362 - 29129 532 255 aa, chain - ## HITS:1 COG:lin0979 KEGG:ns NR:ns ## COG: lin0979 COG0842 # Protein_GI_number: 16800048 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Listeria innocua # 11 255 6 250 250 328 76.0 5e-90 MEAVKKHYFSDLGVMLGRSMRHISRSLDTIVTVTIMPIAMMLLFVYVFGGAIQSGTDNYV NYLLPGILLIAIASGVSYTSFRLFTDVQRGIFERFHSMPISRSTLLWGHVLTSLVSNAIS VVVIVLVALIMGFRSSVGILPWLAVAGILLLFTLALSWVAAIAGLSAKSVDGASAFSYPI IFLPFISSAFVPTGSMPTAVRVFAENQPVTAIVEAIRALLADQPVGNDIWIALMWCVGIL FLAYIFAMRVYKKRV >gi|333606077|gb|AFDH01000067.1| GENE 32 29130 - 29900 396 256 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|90020817|ref|YP_526644.1| ribosomal protein S16 [Saccharophagus degradans 2-40] # 4 226 7 232 318 157 39 1e-37 MQPVQTKAIEVKGLQKSYKQHEVLKGVDFEVEKGSIFALLGSNGAGKTTIVKILATLLKP DGGTAAINGFDAVFRPDHVRQAIGLTGQFAAVDEILTGRENLIMIAKLRYLENPRQVADN MLKRFGLTDAADRKASTYSGGMRRRLDIALSLVGSPQIIFLDEPTTGLDPESRIEVWKIV KELADGGTTILLTTQYLEEAEQLADRIAILHEGKIIANGTLSELKKLFPSAKTEYVEKQP TLEEIFLAIVGKKERK >gi|333606077|gb|AFDH01000067.1| GENE 33 29914 - 30780 702 288 aa, chain - ## HITS:1 COG:CC1891 KEGG:ns NR:ns ## COG: CC1891 COG1357 # Protein_GI_number: 16126134 # Func_class: S Function unknown # Function: Uncharacterized low-complexity proteins # Organism: Caulobacter vibrioides # 69 244 3 173 250 79 27.0 1e-14 MNQKLTDYLNSVFTPYDGVKSVTELKADLLTDLQERYSELKAEGKDDETAFKMTIESIGD IEQTILEVANLSRSLERQVVTNFSASNLAKSDFAGVTAHKGQFNGSALHGSDFSGADLTG SSFKSSDVREANFDGANLTDCGLSALDLANASFNKTILVRTNFSKSGLAGAKFTGVRLTD VSLSMIDLRKTIFEGCLFDGVDFKHSDLSGQCFDGQTFIGVKFEKAALTEVSFKGATFKN VSFQPGFTFTKKYYRMIKTICFDGATMDKLTYAALKGMEADLSKVTVI >gi|333606077|gb|AFDH01000067.1| GENE 34 30794 - 31123 263 109 aa, chain - ## HITS:1 COG:L108503 KEGG:ns NR:ns ## COG: L108503 COG1695 # Protein_GI_number: 15672291 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Lactococcus lactis # 5 108 3 106 116 95 47.0 2e-20 MSENKITSDLLRGHTDTMILRLLSEADHYGYEIVKLIAERSDGEYELKEATMYSSFRRLE ADGDIEWYWGDESQGGRRKYFRITEKGKDTYARNKSNWEYAKRVLENLL >gi|333606077|gb|AFDH01000067.1| GENE 35 31431 - 32147 542 238 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|329923356|ref|ZP_08278840.1| ## NR: gi|329923356|ref|ZP_08278840.1| conserved domain protein [Paenibacillus sp. HGF5] conserved domain protein [Paenibacillus sp. HGF5] # 1 237 1 237 238 185 45.0 2e-45 MNARSAVFRLIYEDVSWYFAKLMLLFITVPLTIVWIIVGLVFDLDRQTLAAISGPAYFFF AGFGLFGFKSLFPISIGMGSTREQFLKAYYGVGIGGVIFSVLCLNICQYALVTIYQRNSV EVGILHAARLFLEEYHFFAYLWIDLMVGMACFGLSFFGYATVYRLGFMRSVIMFMIVTVT GIFLYYGGAISALFDWMSNFKMSAMAFASCVGAVSLAALFATYPMLRHAPLHPMPRKR >gi|333606077|gb|AFDH01000067.1| GENE 36 32144 - 33016 518 290 aa, chain - ## HITS:1 COG:BH3493 KEGG:ns NR:ns ## COG: BH3493 COG1131 # Protein_GI_number: 15616055 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Bacillus halodurans # 2 284 5 283 283 181 35.0 2e-45 MIYVNDVAYSYENVPVLEKVSFEEKEPVIAGLWGRNGAGKTTLMRLLAGHQRPHGGTVQV MGSAPYGNPEAVRHVCYMQEDHPFNTIWTVQDALRFGLYFNANWDQATADRLVETFRLDR KKKVAKLSKGMKSALQFIIGLSSHADVTIFDEPTNGLDAGMRRKLYEALRESHEESPRLI LISTHHIEEVQTLCESLIVMHKGKLLHHQPIDEFREHGIWLAGERSAVTSLIDGHKVLEQ SALGSKIRVMLDAPYSKQWKEQAQACGLSIEKADLQNYLLNITEDAEVNI >gi|333606077|gb|AFDH01000067.1| GENE 37 33019 - 33381 276 120 aa, chain - ## HITS:1 COG:BH3492 KEGG:ns NR:ns ## COG: BH3492 COG1725 # Protein_GI_number: 15616054 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus halodurans # 1 116 1 116 129 114 46.0 4e-26 MKPTLDESQPIFQQIAQMIMDEIVGGELNEEEQIPSENELSRFYNINRATVRKGLQALVD AGIIYKQRGIGMFVKSGAKLQLLKERQRHYREQFVLPLLEEAKRIGLSKESVVQLILEEE >gi|333606077|gb|AFDH01000067.1| GENE 38 33564 - 34325 355 253 aa, chain - ## HITS:1 COG:BS_dltE KEGG:ns NR:ns ## COG: BS_dltE COG3967 # Protein_GI_number: 16080905 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) # Organism: Bacillus subtilis # 1 248 1 247 252 217 45.0 2e-56 MKMSGNTILITGGGSGIGLAFAERFIQAGNQVLICGRRENVLQKAKEQFPGIITRTCDLT IESERIALFDWVIANYPEVNVLVNNAGILQHFNVLKVDAKYNWSIFSEEITANLEAPIHL SMLFAPFFAEKGEAAMINVTSGLAFTPLAVTPIYSATKAALHSFTMSLRHQLSATSIEVI EVAPPAVDTDLSASWLRTHIEPLDAFADGIFKGLEEGKTEIGYSTSADRLRMSRDQVDEY AEKMYNAMKASIE >gi|333606077|gb|AFDH01000067.1| GENE 39 35057 - 36043 567 328 aa, chain - ## HITS:1 COG:BH0990 KEGG:ns NR:ns ## COG: BH0990 COG0614 # Protein_GI_number: 15613553 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-hydroxamate transport system, periplasmic component # Organism: Bacillus halodurans # 7 314 10 310 327 129 30.0 9e-30 MKTVIRLVLSFVLLAGILAGCAGTPEPGNNQAGAGASEKAEETKKEAGQWPRTYVDTLGR EIVLEKKPEKVALLFFRNFEHMFLLDEAPAAATDLNILDEWESLAPYKSSRITDIGSMTN PNLEKLLEVGPDLIIMVSARYGSYGDQLEKIAPVITVDSNENNWQGALREYGKIFGKEQK AETEITRIEALITDSKEQLKKFSDKTFGVIMLGDKLFWGFTTQFVFNKESGLALQPPSQY VNMSTKGEQISLEGLAAMNPDYMFVADIGGSSKKLQGYLKDLESNSAWKSLNAVKNEHMY ALDSSIAAGGPLGIELGVKTIIKNMLAR >gi|333606077|gb|AFDH01000067.1| GENE 40 36114 - 36959 94 281 aa, chain - ## HITS:1 COG:BH0989 KEGG:ns NR:ns ## COG: BH0989 COG2207 # Protein_GI_number: 15613552 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Bacillus halodurans # 1 275 3 278 278 197 38.0 2e-50 MDINKLAEHFARTSFRVEQVCRYMRDPGMSCDDYTEPFPGFVFPLRGRADFDFSGKVYTL TPGNAVHGGAQMPLNRSVLGDTKWEYLLVLYRICAPEPSSFCLSNMHFQLNTGQSPRLLE LLELMWRSSREPGGISTFQTETLFRCVLEELFVCARNQSNDGEQALFEQVSKYIHEHYMD GLSVRALAEQNDINENRLFYVFKKHTGMGPGKYLMAYRLNRAKESLLANDAPIGEIAKSL GYEDALYFSRIFKKQVGVSPAEFRGRFRNNPYEFQDGPIPI >gi|333606077|gb|AFDH01000067.1| GENE 41 37294 - 38217 121 307 aa, chain - ## HITS:1 COG:BH2465 KEGG:ns NR:ns ## COG: BH2465 COG4974 # Protein_GI_number: 15615028 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinase XerD # Organism: Bacillus halodurans # 15 294 9 294 303 124 32.0 2e-28 MMYSDEIKERYAEQIRAFSLWMKHSGYTVATQKEYSREVLNYLQSLEGSSIEEAGKIGVI NFLVSKQKTAGESTRNRSLSAIRSFYSALIDFELATKNPALEVRKSKTEKNKKPVYLDEE ELVQSLEYINGRYRNRNIAIFLLMGYCGLRIGEVHRLNLLNFKKAKGTIEVFGKGRKWNE IPLPDMLNDYLSKVLEERLTPYSKKEDAFFVSQKGRRLSIRQIQKIANQTFSAFKEKNPK VTDMNLSCHKLRHSFATMMLKKGHDIRIVKELMGHSSIETTALYTHVNDEQKKNAMASVN IPMEAIG >gi|333606077|gb|AFDH01000067.1| GENE 42 38509 - 39249 126 246 aa, chain - ## HITS:1 COG:no KEGG:PPE_04788 NR:ns ## KEGG: PPE_04788 # Name: not_defined # Def: YheD # Organism: P.polymyxa # Pathway: not_defined # 1 246 1 246 246 359 82.0 6e-98 MGSTTRNKWYKYLILRRHASLKRYVLKTRLLNRYNFSKLLSKYRHVIVKPVWGSRGRGVI QVSWKGRHKYAVHYENRKIIIRGRTNTYRYIRRKIGHASYMVQRRITRPTINKRPFDMRV IIQRRIYSSKWVVTGKVIKVAGKGYIVSNHTRSKGTLHRFKSGIRRSSVRHLSASALESH IDRVSIRSAKRLSAFFPGHRIYGLDVGINRKGRIGIIEANLYPASSHFLKLKDKTMYYRI MDYKNG >gi|333606077|gb|AFDH01000067.1| GENE 43 39265 - 40377 587 370 aa, chain - ## HITS:1 COG:STM0431 KEGG:ns NR:ns ## COG: STM0431 COG0075 # Protein_GI_number: 16763811 # Func_class: E Amino acid transport and metabolism # Function: Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase # Organism: Salmonella typhimurium LT2 # 9 357 7 356 367 247 39.0 3e-65 MSSSVKKNILLTPGPATTTESVKRAQVVPDICPREAEFGQIMAYISTELTRLVADPDHYA TILFGGSGTAAVESIISSVPNHDTMVIVSNGAYGKRMCEIAEVYGVNYVEFKSPPDDAID LADLERYIQSSKRTVSHLAVVHHETTTGLLNKIKDIGALCKRYQIDMIVDAMSSFAAIPI QLKEMNIAYLAASSNKNLQGMAGVSFVIAEKNKLENLKGRKPRSYYLNLYAQYNYFAEHG QMRFTPPVQTLYALRQAIEELKQEGVDKRYERYATSWKTLINGLARLGLTYIVPEEHHSK ILTSILEPQCAGYDFQSMHDYFYSKGIMIYPGKLEKLNTFRIANIGDITYKEMELFLELL ERYLSSIKSG >gi|333606077|gb|AFDH01000067.1| GENE 44 40374 - 40658 163 94 aa, chain - ## HITS:1 COG:no KEGG:PPE_04790 NR:ns ## KEGG: PPE_04790 # Name: not_defined # Def: 3-phosphonopyruvate decarboxylase (EC:4.1.1.-) # Organism: P.polymyxa # Pathway: not_defined # 1 94 293 386 386 168 85.0 7e-41 STGGQSTVSHGVNFIDIAASCGYMQSIHVHSLEELQAFLQEWKVNRGLTFVLLKISKSSK DQLARPHMKPHEVKERLQRFIHNAPLKDKEVGGS Prediction of potential genes in microbial genomes Time: Sun Jul 17 09:20:36 2011 Seq name: gi|333606062|gb|AFDH01000068.1| Paenibacillus sp. HGF7 contig00007, whole genome shotgun sequence Length of sequence - 14489 bp Number of predicted genes - 12, with homology - 10 Number of transcription units - 5, operones - 4 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 2 - 902 542 ## Pjdr2_0370 hypothetical protein 2 1 Op 2 . - CDS 895 - 1350 245 ## COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog - Prom 1492 - 1551 3.2 + Prom 1492 - 1551 6.2 3 2 Op 1 24/0.000 + CDS 1662 - 3068 1244 ## COG1131 ABC-type multidrug transport system, ATPase component 4 2 Op 2 4/0.000 + CDS 3061 - 3777 812 ## COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component 5 2 Op 3 . + CDS 3783 - 5171 1528 ## COG3225 ABC-type uncharacterized transport system involved in gliding motility, auxiliary component 6 2 Op 4 . + CDS 5168 - 6088 932 ## PPE_03794 hypothetical protein + Term 6133 - 6177 7.8 + Prom 6111 - 6170 5.0 7 3 Op 1 . + CDS 6223 - 6513 294 ## 8 3 Op 2 . + CDS 6594 - 7694 444 ## + Prom 8038 - 8097 2.4 9 4 Tu 1 . + CDS 8231 - 8653 448 ## BBR47_22790 hypothetical protein + Prom 8776 - 8835 7.3 10 5 Op 1 4/0.000 + CDS 8945 - 9631 661 ## COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold 11 5 Op 2 5/0.000 + CDS 9682 - 12015 1972 ## COG0210 Superfamily I DNA and RNA helicases 12 5 Op 3 . + CDS 12057 - 14075 1885 ## COG0272 NAD-dependent DNA ligase (contains BRCT domain type II) + Term 14099 - 14138 9.1 Predicted protein(s) >gi|333606062|gb|AFDH01000068.1| GENE 1 2 - 902 542 300 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_0370 NR:ns ## KEGG: Pjdr2_0370 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 19 299 27 312 451 135 35.0 3e-30 MDEHDWLQKELRGAAEGEIPAEADLAIAQGIQRAKALRRRKRTSLTAAASFILLVTVFAA MVHVSPAFASAIRQIPGMEVFVRILSTQDKGLAQAFDNEFFQPINISHTQNGETFTLNGV IADESRIVVFYSWSNAHSTSKRGPEVNLHPADGSHMPAIIGFQHSPVPAEPVSSGSDYLD AMLVEGAPMPEDFIFEARLAGDDGPVWKIPFKLDRELFMNRVETIPIGKSVVIQGQTVTF NEAKLYPTRILLDVSYEESNTKQLFGLRDIHLVTEKGERLPNWGASNDTEDKKILTFESP >gi|333606062|gb|AFDH01000068.1| GENE 2 895 - 1350 245 151 aa, chain - ## HITS:1 COG:BH0620 KEGG:ns NR:ns ## COG: BH0620 COG1595 # Protein_GI_number: 15613183 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog # Organism: Bacillus halodurans # 1 150 20 172 177 82 29.0 4e-16 MDEEKARLYRIAYAYLHSRPDALDALQETAFRAFRSIRKLHDHALFSTWITRILLNYCAD ERKRQKRTVPPDYAAPKEVSGPQPDSLDLYMALDCLQPSEKQLVILKYMEDWTYPQIAAL LQMPESTVKTRARKALDQLKSILGREDEAYG >gi|333606062|gb|AFDH01000068.1| GENE 3 1662 - 3068 1244 468 aa, chain + ## HITS:1 COG:sll0489 KEGG:ns NR:ns ## COG: sll0489 COG1131 # Protein_GI_number: 16331772 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Synechocystis # 1 234 1 234 342 244 50.0 3e-64 MLEVNGVSKLYENSRGVKEINFSMQRGEIVGFLGPNGAGKTTTMRMITGYLNPTGGNILV DGLSMADHPRKARRKIGYLPETPPLYPEMTVRSYLKFVADLRDVPVRAQKGRVNEIIDKL GLNGRENQIIRSLSKGYKQRLGLAQAIVHKPDLLVLDEPTSGLDPKQIIEIRSLIRELGE NHTVLLSTHILPEVNTLCNRVLIINQGQIVLDEKPEMLGATMGDTFEVSLEVKGPREEII SLLGTTAGIAAVRELADGAPAAGALGLTSAPEAAASGAGEAADAEAEAASGGAGDPASEA AEAAAVTPASPDAAAEPAGSSGSAAQTDGPGRPQSEDVEEPAAAGADASAAPQAKTGGQQ TASPGGTAPDTVKLLVSSADSTDIREPLFFRLAEAGYPILEMKRESLSLEDIFLKLTTDE SLSGSAEDEPESRPGQSSRLDRVSKWLPLKDKSGSAAAGQSKGGGEDA >gi|333606062|gb|AFDH01000068.1| GENE 4 3061 - 3777 812 238 aa, chain + ## HITS:1 COG:PA4038 KEGG:ns NR:ns ## COG: PA4038 COG1277 # Protein_GI_number: 15599233 # Func_class: R General function prediction only # Function: ABC-type transport system involved in multi-copper enzyme maturation, permease component # Organism: Pseudomonas aeruginosa # 7 236 7 242 244 80 26.0 2e-15 MRRTWAICSKELQLFFYSPTSYVAFAFYVLVSGIMFYLNFVMVQPSLIDIRYVVGNITFI YLFIIPLLTMRLVADEFRHGTDELLLTSPAGIGEIVLGKYLAALIVQFLLTICSLVYPLI MSAFGTLDQPVLWLSYLSMFLLGAAMMAIGLFASTLSNNQMVAGIAGFAFLLFFWLIDWM ADGFGGKFREWIIQFSMSGRMANMQKGILQGADILFFVTLAAVFLILGMQTLERKRWR >gi|333606062|gb|AFDH01000068.1| GENE 5 3783 - 5171 1528 462 aa, chain + ## HITS:1 COG:alr1621 KEGG:ns NR:ns ## COG: alr1621 COG3225 # Protein_GI_number: 17229113 # Func_class: N Cell motility # Function: ABC-type uncharacterized transport system involved in gliding motility, auxiliary component # Organism: Nostoc sp. PCC 7120 # 7 367 71 414 567 121 27.0 3e-27 MKKWLRGTNTAVISIAVIGIFILLTFFLHSLKDFQLDLSKNKMYTLSDQTLGTLKDLGKD IHVTAFTNPQEDPDGVLTREVTDMVQEYSKRTGKITYNQYDMLKEPSKVQQYGVQQSSLV FESGSQKKVITFQEMFTAGQGSGSYQFAGEEKMTQAVKSLTSTEKHTVYFLSGHQEMTLQ EMTVLKSSLEGENYTVKDLNLYREGKIPDDADMLFLIGPQTDLNDKEAELIKQYLSGKGK LYVSLGFSQEMASKWKNIDALMNTYGVKDQHAVAIEAKQSTLYDPLTIIPEYGDHDITTK LKNYNLLTMMSLAVALNAQEEGDFKSTPILKTSAQAYGETDIAGLMKSQTNQDDKDVKGP LNLGYAVEDKDSKPKAVILGGSTFLMDQEINVQGNRDFAMNSIGWLQEKKDQVTIRPRQN EAYQTAALTPGQAKTIFFVAIVFMPLIFLLLGGFIWWRRRKG >gi|333606062|gb|AFDH01000068.1| GENE 6 5168 - 6088 932 306 aa, chain + ## HITS:1 COG:no KEGG:PPE_03794 NR:ns ## KEGG: PPE_03794 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 1 293 8 302 319 113 26.0 1e-23 MKKFAPALLLILVFLGGLWYAWSQDFFKEKQAETSKPLVHVNVADVQSFSILSGGQQTEL VRKDGEWSMTKPSAAPLNPNLTEGWMDSFNLLTQERVVEEKASDLAKYGLDKPSSVYKVN LADGTSQEVKAGSPTPVEGYVYVQLGSSPAVYQVGESSLSVLNKSPLDFVETSPVKFDYD QVKSVTFSWKDHKWSLTKNEPDKSAAQSKWKLPDREIEGAEATQVLDKLLFMKTEEMPKR AADEAIKPGEWTLEIVRTVDGKEMKDTYSGRSDGKSVWIAKQGGDWAYAIPLAAMEEAAA SNVKKE >gi|333606062|gb|AFDH01000068.1| GENE 7 6223 - 6513 294 96 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MGMLIKISDQGVEGMAISHAGEHRVVYKEEHLERVTLPELQSLGDLIRFEHTLAKRCAEE AESSTDVELREVLEQLAVLRLGCARQLLAALRSTEL >gi|333606062|gb|AFDH01000068.1| GENE 8 6594 - 7694 444 366 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKQELQTDQAGEKQWGAAERTMADFKRLASRYASAAWDARQPGIRALYRQLLQQTLDDQD KLYRLLADRGDKKKVQNASGEDVLQEIASHDRALSELEAAIRKDFAGIEAKEAETGASPE AVLYTAEADKTTALEPVTYEEKELEIFGERPDYYSSLSSSSVYDSSYGDVYHPEPSVSEE EESVSAEAAETGLSALAAPEQPAPAPAASAAPAPMAPSRFGGAPASAAPEQPAPAPAASA AQPYAAPRSPYGGSPATGGAVPYGTPAAAAPPVAYASGGPGPSYGGFRSPAPASAREPYG QSRPQPGQPAPGAYSAGQPQRYGQSYARQPQQSSPTPITPPSAQQPYNSPYRGEGGGRPP AYRPLG >gi|333606062|gb|AFDH01000068.1| GENE 9 8231 - 8653 448 140 aa, chain + ## HITS:1 COG:no KEGG:BBR47_22790 NR:ns ## KEGG: BBR47_22790 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 8 139 4 138 139 66 29.0 3e-10 MRKISGKRSFVLMLLLIFACSGALTACGFQNKSEQVGSSAVSGAAPTIDATLTQEGTSAV ISYKVSNLTIAGDSMGAAPKQGEGHLHIYVDGVQKAMLKTDAPVRLENIPPGKHTIKLSL QQNDHVPLNVEKVFDVTIKK >gi|333606062|gb|AFDH01000068.1| GENE 10 8945 - 9631 661 228 aa, chain + ## HITS:1 COG:BH0647 KEGG:ns NR:ns ## COG: BH0647 COG1646 # Protein_GI_number: 15613210 # Func_class: R General function prediction only # Function: Predicted phosphate-binding enzymes, TIM-barrel fold # Organism: Bacillus halodurans # 1 227 1 227 229 285 59.0 4e-77 MIVDSSTWKHVFKLDPDREIADEALERICLSGTDAILVGGSSGVTFDNTVDLLARIRGFE VPCILEVSDAEAIVPGFDLFFIPMVLNAGDPQWILGRHHEALKEYGAIMDWNEILVEGYV ILNGESTAAKVTSARTDLTERDVVAYARMAEHLLRLPIFYVEYSGTFGDMELVRRTRRVL EGTRLFYGGGIDGPEKAKLAAEAADTIVVGNLIYEDLDLALETVRALI >gi|333606062|gb|AFDH01000068.1| GENE 11 9682 - 12015 1972 777 aa, chain + ## HITS:1 COG:BS_yerF KEGG:ns NR:ns ## COG: BS_yerF COG0210 # Protein_GI_number: 16077729 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases # Organism: Bacillus subtilis # 6 777 7 739 739 913 60.0 0 MIDIQQAVQKLNPQQRKAVEATEGPLLIMAGAGSGKTRVLTHRIAYLIGAKRVAPWSILA ITFTNKAAREMRERVEQLVGPSANDIWVSTFHSMCVRILRRDIDRIGFTSNFSILDSGDQ LSVIKTCMKELNIDTKKFEPKAVQAALSTAKNELITPQRFEQKIGDYFDGLVAKVYTLYQ KKLKSNNSLDFDDLIMATIQLFTDVPEVLDFYQNKFRFIHVDEYQDTNRAQYMLCQMLAD KSKNLCVVGDSDQSIYRWRGADITNILNFEEDYPNATTILLEQNYRSTSTILQAANKVIG NNTGRKAKNLWTDKGEGSKIRVYQADSEHDEGYFIAGEINKNVGSAQKYGDHAILYRTNA QSRVIEEILIKSDIPYQIVGGVKFYDRKEIKDILAYLRLISNPDDDISLTRVVNVPKRGI GDTTLDKVADFAARRGISMFAMLDEVESLEISARTRNALADFREMIHNLHRMVDYLSVTE LTEKVLEMSQYRMELQRENTLESKSRLENIDEFLSVTSEFETRNEDKSLVAFLTDLALIA DIDTMDKDEGPQDSVVLMTMHSAKGLEFPVVFIIGMEEGVFPHSRAATDNEELEEERRLA YVGITRAEENLFLSCARMRMLFGRTSANPPSRFLKEIPQELMEIVSSGGGGSTFSGWSRS GGTSFGGRTSSGFGSSGSTSFGQSAAGGSSWGSQTSSFGKSSPGASTVRSTPRTAPAAAG SQPGDFKMGDKVSHGKWGTGVIVAVKGKGDDTELQIAFPAPVGVKRLLAKFAPITKQ >gi|333606062|gb|AFDH01000068.1| GENE 12 12057 - 14075 1885 672 aa, chain + ## HITS:1 COG:CAC2673 KEGG:ns NR:ns ## COG: CAC2673 COG0272 # Protein_GI_number: 15895931 # Func_class: L Replication, recombination and repair # Function: NAD-dependent DNA ligase (contains BRCT domain type II) # Organism: Clostridium acetobutylicum # 8 664 11 661 669 629 49.0 1e-180 MADFTAEMKTLIEAIEQHNYNYYTLDRPVVTDAEYDKLYDRLVELEQESGVTLPNSPTRR VGGELLKGFEPHRHLSRLWSLDKTRDKDGLNAWLTRVLKLVGEYNKQNPDNPLPHPTFVV ELKFDGLTLNLTYDKGTLVQASTRGNGTVGEGILEQVKTIRSVPLEIPYKDGTIEVQGEG LMFLSVLDQYNQTAAEPFKNARNAAAGALRNLNPQVTAKRKLSAFFYNVGYSDNLRFTDH REMVEFLKVNRFKVNPDIKFFDSIDDVMEELERIGSNRLTYDFLIDGAVVKVADMRTREV LGYTEKFPRWAIAFKFEAEEVTTVLESVSWEVGRTGKITPVARVEPVDLAGVTVQNCTLN NIGDIERKNLKHALGSLVYIRRSNDVIPEILGKATEEIDGEEIVYPENCPACGTPLEQRG AHLFCPNRLGCRPQMIGRITHFASRDAMDIDTFSVMTAEQLYQEVGVRDPADLYRLTYDD LIKLERFGEKKANKLLAAFEKSKECDLSSFLFALGIPNTGKTTTKVLAEHLGSLGRVMEA SIEELIALPDVGGIVADSIYSFFRDPLMQDSISRMLTAGVAPRAEEKPAAAADESHPLFG KTIVLTGTLSAMSRDEAADKLEALGAKVTGSVSKKTDIVIAGESAGSKLAKAQSLGIRII DDEQELLALLGE Prediction of potential genes in microbial genomes Time: Sun Jul 17 09:21:46 2011 Seq name: gi|333606017|gb|AFDH01000069.1| Paenibacillus sp. HGF7 contig00037, whole genome shotgun sequence Length of sequence - 46271 bp Number of predicted genes - 42, with homology - 39 Number of transcription units - 19, operones - 9 average op.length - 3.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 4/0.000 - CDS 2 - 371 330 ## COG1232 Protoporphyrinogen oxidase - Prom 410 - 469 3.6 - Term 416 - 462 1.8 2 1 Op 2 9/0.000 - CDS 473 - 1417 984 ## COG0276 Protoheme ferro-lyase (ferrochelatase) 3 1 Op 3 . - CDS 1421 - 2425 820 ## COG0407 Uroporphyrinogen-III decarboxylase - Prom 2527 - 2586 4.3 - Term 2628 - 2671 2.2 4 2 Op 1 2/0.000 - CDS 2781 - 3776 1168 ## COG0113 Delta-aminolevulinic acid dehydratase 5 2 Op 2 6/0.000 - CDS 3873 - 5435 1534 ## COG0007 Uroporphyrinogen-III methylase - Term 5705 - 5749 1.0 6 2 Op 3 1/0.000 - CDS 5751 - 6704 1202 ## COG0181 Porphobilinogen deaminase 7 2 Op 4 . - CDS 6786 - 7523 597 ## COG1648 Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) 8 2 Op 5 3/0.000 - CDS 7538 - 8380 872 ## COG0755 ABC-type transport system involved in cytochrome c biogenesis, permease component 9 2 Op 6 . - CDS 8417 - 9814 1542 ## COG0373 Glutamyl-tRNA reductase - Prom 9845 - 9904 8.2 10 3 Tu 1 . - CDS 9960 - 10493 573 ## gi|167463595|ref|ZP_02328684.1| S-adenosylmethionine decarboxylase proenzyme - Prom 10566 - 10625 2.6 - Term 10550 - 10591 8.1 11 4 Tu 1 . - CDS 10635 - 11036 382 ## COG1586 S-adenosylmethionine decarboxylase - Term 11343 - 11378 5.1 12 5 Tu 1 . - CDS 11444 - 12031 514 ## Pjdr2_4443 hypothetical protein - Prom 12235 - 12294 2.6 - Term 12273 - 12317 6.0 13 6 Op 1 2/0.000 - CDS 12336 - 13004 679 ## COG5658 Predicted integral membrane protein 14 6 Op 2 . - CDS 12985 - 13278 337 ## COG0640 Predicted transcriptional regulators 15 6 Op 3 . - CDS 13355 - 14125 839 ## - Term 14223 - 14262 2.5 16 7 Op 1 4/0.000 - CDS 14299 - 14940 594 ## COG0218 Predicted GTPase 17 7 Op 2 3/0.000 - CDS 15010 - 17349 2711 ## COG0466 ATP-dependent Lon protease, bacterial type - Prom 17391 - 17450 4.8 - Term 17427 - 17476 9.1 18 7 Op 3 . - CDS 17499 - 19265 1629 ## COG1067 Predicted ATP-dependent protease - Prom 19286 - 19345 1.6 19 8 Tu 1 . + CDS 19389 - 20312 608 ## COG0860 N-acetylmuramoyl-L-alanine amidase + Term 20405 - 20441 7.3 - Term 20393 - 20429 6.5 20 9 Tu 1 . - CDS 20499 - 21647 1045 ## COG0821 Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis 21 10 Op 1 24/0.000 - CDS 21795 - 23060 264 ## PROTEIN SUPPORTED gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 22 10 Op 2 29/0.000 - CDS 23073 - 23666 376 ## COG0740 Protease subunit of ATP-dependent Clp proteases - Prom 23692 - 23751 4.9 - Term 23768 - 23809 6.3 23 10 Op 3 . - CDS 23869 - 25236 1425 ## COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) - Prom 25330 - 25389 5.3 24 11 Tu 1 . - CDS 25391 - 26305 931 ## PPSC2_c4175 protein - Prom 26381 - 26440 4.9 - Term 26477 - 26522 4.6 25 12 Op 1 . - CDS 26553 - 27290 577 ## COG2120 Uncharacterized proteins, LmbE homologs 26 12 Op 2 . - CDS 27315 - 28277 1034 ## COG2971 Predicted N-acetylglucosamine kinase 27 12 Op 3 . - CDS 28274 - 29785 1606 ## COG0165 Argininosuccinate lyase 28 12 Op 4 . - CDS 29844 - 30590 622 ## COG1402 Uncharacterized protein, putative amidase - Prom 30683 - 30742 1.8 - Term 30640 - 30673 4.5 29 13 Tu 1 . - CDS 30756 - 33308 2689 ## COG2120 Uncharacterized proteins, LmbE homologs 30 14 Op 1 8/0.000 - CDS 33442 - 35187 2019 ## COG1178 ABC-type Fe3+ transport system, permease component 31 14 Op 2 2/0.000 - CDS 35201 - 36283 1192 ## COG3839 ABC-type sugar transport systems, ATPase components - Term 36336 - 36369 0.5 32 14 Op 3 . - CDS 36427 - 37515 333 ## PROTEIN SUPPORTED gi|167854980|ref|ZP_02477755.1| 50S ribosomal protein L13 33 14 Op 4 . - CDS 37547 - 38746 272 ## PROTEIN SUPPORTED gi|116517028|ref|YP_816079.1| glucokinase - Prom 38793 - 38852 8.2 - Term 38969 - 39002 5.2 34 15 Op 1 . - CDS 39020 - 39148 228 ## 35 15 Op 2 . - CDS 39238 - 39351 79 ## - Prom 39411 - 39470 5.0 - Term 39429 - 39476 4.0 36 16 Tu 1 . - CDS 39512 - 39865 424 ## GYMC10_5888 hypothetical protein - Prom 39930 - 39989 5.5 + Prom 39836 - 39895 2.5 37 17 Tu 1 . + CDS 40107 - 41951 1999 ## COG0367 Asparagine synthase (glutamine-hydrolyzing) - Term 42031 - 42073 2.1 38 18 Op 1 19/0.000 - CDS 42217 - 42819 730 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 39 18 Op 2 6/0.000 - CDS 42816 - 43967 1172 ## COG4585 Signal transduction histidine kinase 40 18 Op 3 45/0.000 - CDS 43968 - 44723 929 ## COG0842 ABC-type multidrug transport system, permease component 41 18 Op 4 . - CDS 44740 - 45636 341 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 - Prom 45707 - 45766 2.8 - Term 45810 - 45850 3.0 42 19 Tu 1 . - CDS 45891 - 46271 183 ## PROTEIN SUPPORTED gi|148360063|ref|YP_001251270.1| ribosomal protein Ham1 Predicted protein(s) >gi|333606017|gb|AFDH01000069.1| GENE 1 2 - 371 330 123 aa, chain - ## HITS:1 COG:BS_hemY KEGG:ns NR:ns ## COG: BS_hemY COG1232 # Protein_GI_number: 16078078 # Func_class: H Coenzyme transport and metabolism # Function: Protoporphyrinogen oxidase # Organism: Bacillus subtilis # 1 123 1 122 470 122 48.0 1e-28 MNEARKVIVVGGGITGLTAAYYVNKRLKEAGCTADVTLVEGAEKLGGRIHTLRKEGFVIE KGPDSFLARKLPIIELSRELGLEGELTGTNPEAKKTYILRDGTLHPMPAGLVLGIPTDIE PFM >gi|333606017|gb|AFDH01000069.1| GENE 2 473 - 1417 984 314 aa, chain - ## HITS:1 COG:BH1203 KEGG:ns NR:ns ## COG: BH1203 COG0276 # Protein_GI_number: 15613766 # Func_class: H Coenzyme transport and metabolism # Function: Protoheme ferro-lyase (ferrochelatase) # Organism: Bacillus halodurans # 1 309 1 308 310 290 47.0 3e-78 MSRKKVGVLVMSYGTPQSMEDIEAYYTHIRRGNKPSPEQLHELTSRYEAIVGGVFPLREN TDNQVAGLQNALASEHDDVEFVCFQGLKHAHPFIEDGIEQMAQSGITEGVGIVLAPHYST MSIGSYNKRAREKAAEHGIAMTFVDSYHLHPKLLQALTERVERALGKFGEENRSSVRVLF SAHSLPEKILELGDPYPEQLLETSRAIADKAGIENWQFAWQSAGQTATPWLGPDILDVLR TLAKEDVKRVLVCPIGFVSDHLEVLYDLDIEAQQLANEIGLHLERTDSLNTDPLYMQTLS DAVWKQYGELTKQA >gi|333606017|gb|AFDH01000069.1| GENE 3 1421 - 2425 820 334 aa, chain - ## HITS:1 COG:BS_hemE KEGG:ns NR:ns ## COG: BS_hemE COG0407 # Protein_GI_number: 16078076 # Func_class: H Coenzyme transport and metabolism # Function: Uroporphyrinogen-III decarboxylase # Organism: Bacillus subtilis # 1 328 25 351 353 357 54.0 3e-98 MWYMRQAGRYDPEYRKIKEKYSLLEICEQPELAAEVTLMPVKKLGVDAAILYSDIMNPVA SLGIQFDIVKNVGPVIENPIRSREDVMKLKPIDVEGDLSHVIETIRILDRELTVPLITFA GAPFTIASYLIEGRPSKSYIRTKELMYGNPEVWHALMDKLGDMVITYLRAHIAAGAKAVQ LFDSWVGALAPEDFRVFVLPTIQRIFRELGDLKQPKIYFPGVSSGELLPLLGDLQADVIG LDWRVSIPEGRRRTGGRFAVQGNLDPYLLTAPMPVIQEHAKRIIDQGITEPGYIFNLGHG LFPEASLDKLKELTDFIHAYSAEALAGRNAGKGV >gi|333606017|gb|AFDH01000069.1| GENE 4 2781 - 3776 1168 331 aa, chain - ## HITS:1 COG:BH3044 KEGG:ns NR:ns ## COG: BH3044 COG0113 # Protein_GI_number: 15615606 # Func_class: H Coenzyme transport and metabolism # Function: Delta-aminolevulinic acid dehydratase # Organism: Bacillus halodurans # 7 328 9 324 328 433 65.0 1e-121 MSFPLVRHRRLRGSAAIRNLVRENALSVNDLIQPVFVEAGHNIKSEIPSMPGVYHFSLDR LEEEIREISELGIQGILLFGVPETKDAVGTSAFHEEGIVQQASRLIKKINPNLLIIADTC LCQFTDTGHCGVVHHNPETGCTDIANDESLELLVKTAVSQAKAGADIIAPSNMMDGYVHA IRAGLDAEGLEHVPIMAYSVKYSSAYYGPFREAVDSAPQFGDRKTYQMDSANSREALREA ESDVLEGADFLMVKPALAYMDILQLLKQNFDLPLVAYNVSAEYSMVKAAAQNGWINEKEI VLETLLGFKRAGADIILTYHAKDAARWLKNV >gi|333606017|gb|AFDH01000069.1| GENE 5 3873 - 5435 1534 520 aa, chain - ## HITS:1 COG:BS_nasF_1 KEGG:ns NR:ns ## COG: BS_nasF_1 COG0007 # Protein_GI_number: 16077397 # Func_class: H Coenzyme transport and metabolism # Function: Uroporphyrinogen-III methylase # Organism: Bacillus subtilis # 1 248 3 249 250 298 55.0 2e-80 MERGKVYLVGAGPGDPKLITVRGLQAIERADVIVYDRLASPRLLKHRKPDAELVFVGKLP DKHMMKQEDINRLLVDLALQGKVVTRLKGGDPSVFGRVGEEAELLADHEVPFEIIPGITS AIAVPAYAGIPVTHRDFTSSVAIVTGHEYPNKTYTKLDWEHLAKGIGTLVFLMGVANLEQ ISEQLIRYGKPADLPVALIRWGTWTEQQTLTGTLSDISAKAKEAGFKSPAVIIIGEVVKL REKLAWFEKKPLFGKRVLVTRARSQASELVAMIEELGGEPVEFPVIKLQPPSSPDAQRLL DEALRGLANYNWVVFTSTNGVEFFFRRMRELRLDIRGLAGVRIAAVGPKTAEALETRGLL VETLPGEFHADELLAELGKAVRPGERALLPTADIARNALPQGLRSLGLEVNEVDVYENVP EVEGGEDVVRLLEEGQVHITTFTSSSTVTNLIGALQKLGVQDPVSLLKNTEIACIGPKTE ATLAHYELAAAYMPPEATIASLVESIAAGRAVKTGEPAGS >gi|333606017|gb|AFDH01000069.1| GENE 6 5751 - 6704 1202 317 aa, chain - ## HITS:1 COG:BH3046 KEGG:ns NR:ns ## COG: BH3046 COG0181 # Protein_GI_number: 15615608 # Func_class: H Coenzyme transport and metabolism # Function: Porphobilinogen deaminase # Organism: Bacillus halodurans # 1 309 1 303 311 336 58.0 3e-92 MRTIVVGTRQSALALTQTNQVIDELKELSRQSGIECEFELRKIVTKGDRILDVTLSKVGG KGLFVKEIEQAMMDKEIDIAVHSMKDMPFELPEGLMVGAVPKRQDPRDVLITKGEKSLDE LPQGALVGTSSLRRSSQLQHSRPDLRIQPVRGNIDSRLRKLESEGFDAIVLAAAGMHRIG WQDRISAYVPPEVCVPAVGQGALCIECRADDEVVLNLLSKIQDDDTALAVRAERSFLGRL NGGCQVPLGAYATVERTGGGTELSLTAMVGSPNGAELLKETLRGSDPEALGREAAEKLIA RGADRILAEAYESGRIE >gi|333606017|gb|AFDH01000069.1| GENE 7 6786 - 7523 597 245 aa, chain - ## HITS:1 COG:VC1363_1 KEGG:ns NR:ns ## COG: VC1363_1 COG1648 # Protein_GI_number: 15641375 # Func_class: H Coenzyme transport and metabolism # Function: Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) # Organism: Vibrio cholerae # 2 200 8 183 201 103 35.0 3e-22 MLRLEGKRCLVVGGGAVAERKIASLLEAGALVTVISPAAAAAVEKWAETGRITWRCGRYG EAGYSYTKDREGSDKGRPGTEASLYPDLSPYLIVFAATDNPQVNERVLADADKAGKLVSV ADKPDSGNLIVPAAVRRGKLTLAVSTSGASPALSAKIGRELQERYGPEYEIYLDFLAELR ELARSRVGDMPLRHELLRRLPNWRVLDRIAAGTYEAWRASLLGRFQAAQDSEEAFAAIWM EADQQ >gi|333606017|gb|AFDH01000069.1| GENE 8 7538 - 8380 872 280 aa, chain - ## HITS:1 COG:BH3047 KEGG:ns NR:ns ## COG: BH3047 COG0755 # Protein_GI_number: 15615609 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in cytochrome c biogenesis, permease component # Organism: Bacillus halodurans # 5 273 2 270 271 159 36.0 6e-39 MFTRSFLYDAIIYLYALSLLFYFSDVARANRSAKRMGTGLLSFVWVLQTAYLGYNLYEHL GRWVFSMFETLFLFSWVLVTVSLIMSRFFRIELVVFFVNLFGLAVLALNFFSDSNVSPMI DSWNVNDELLFIHVSLAVGSYAAYTISAIFSGMYLFLHRKLKQKSWTNTMKRLPSLEKIE RYTYVSVVIGTPLLMLALALGVVWVLIEKNVNVLFDSKVINSLLVLCAYGFYLFQHHSLS MSGPKLAKWNLAAFVIVLLNFILSNVFSGFHNWQQTGVGG >gi|333606017|gb|AFDH01000069.1| GENE 9 8417 - 9814 1542 465 aa, chain - ## HITS:1 COG:BH3048 KEGG:ns NR:ns ## COG: BH3048 COG0373 # Protein_GI_number: 15615610 # Func_class: H Coenzyme transport and metabolism # Function: Glutamyl-tRNA reductase # Organism: Bacillus halodurans # 1 438 1 438 459 488 60.0 1e-137 MHIVVVGLNYRTAPVAIREKFTFTQEELSQALVELRQTKSILECVVVATCNRTEIYAVVD RVHICGHYIRKFMEEWFEIPRTEFNNHLYIYEHDRAIEHLFRVASGLDSMIIGETQILGQ VKDAFLEAQRLGATGTIFNTLFKQAVTMAKRAHSETSIGENPVSVSYAAVELGKRIFGSY EGKKILIVGAGKMSELTVKHLYASGAERVDVVNRTYERALELAGKFNGHAYPMEQLYERL AEADIVISSTGSSDYVLTKKQLQSVLPKRKSRPLFMMDIAVPRDLDPDISDLPDVFLYDI DDLEAIVDSHLKERKKEAVKIEEMIGAEIAAFDQWTKTLGVSPVIHALQAKANMVHQETM ESLFKKLPDLDEREMKVIRKLTKSIVNQMLRDPILAIKEMAAEKKGDEALEMFTKMFALE ELMAEQAQAEALEQAKAEAVQTAAQKHAKEELTGGFTMQPALARS >gi|333606017|gb|AFDH01000069.1| GENE 10 9960 - 10493 573 177 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|167463595|ref|ZP_02328684.1| ## NR: gi|167463595|ref|ZP_02328684.1| S-adenosylmethionine decarboxylase proenzyme [Paenibacillus larvae subsp. larvae BRL-230010] hypothetical protein PL1_2215 [Paenibacillus larvae subsp. larvae B-3650] hypothetical protein PL1_2215 [Paenibacillus larvae subsp. larvae B-3650] # 1 175 1 175 177 152 49.0 1e-35 MRSQIKSKLILFALAAGLVAWPLAGLYGYVTKGSDKPDAERLLFQVSLFQIELLNRFLQD AARSADTRELDSLKQALYTASYTHERLVLAEGSEKLHTLGSLPQLMQYILRLQIGGERAL KADEQGVLQESAKLYAQLYEAYGKLMTSSGSVVTSQSEAVSKNDEALRELLEKKLLQ >gi|333606017|gb|AFDH01000069.1| GENE 11 10635 - 11036 382 133 aa, chain - ## HITS:1 COG:MJ0315 KEGG:ns NR:ns ## COG: MJ0315 COG1586 # Protein_GI_number: 15668490 # Func_class: E Amino acid transport and metabolism # Function: S-adenosylmethionine decarboxylase # Organism: Methanococcus jannaschii # 6 122 16 135 135 115 43.0 2e-26 MEYSTFGRHVAVDTWGVDFELLNNAEWLQAQMVDAAEACGATVMSVQSKQFEPQGATVLV LLSESHLSIHTYPERGFAALDCYTCGETVDPQLAIDHMISLLKPEKVYAKKLVRGMGEFE VETPEIKQAVLAK >gi|333606017|gb|AFDH01000069.1| GENE 12 11444 - 12031 514 195 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_4443 NR:ns ## KEGG: Pjdr2_4443 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 1 195 1 196 196 184 52.0 2e-45 MAQRLATEYVKTRLQLTEAEMSKFVQMFADQQITAQVKVIENGNQEFVFQEEAGEEIVLS FERVGKQYISSGSCRVTSLRLTNLMRKAIAEFKGSAIVKRIYATFVMMYTYENGKVVKIV EIKGQHTNVVYEYHDTLGQLENLFRRTEIEREIGMIQDQINHLLDMRNEVPCPSLKRDID DRLKMLTRRLFVLEA >gi|333606017|gb|AFDH01000069.1| GENE 13 12336 - 13004 679 222 aa, chain - ## HITS:1 COG:MA3135 KEGG:ns NR:ns ## COG: MA3135 COG5658 # Protein_GI_number: 20091953 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Methanosarcina acetivorans str.C2A # 27 219 24 215 227 110 34.0 3e-24 MTNAIRKTPRWTWKDTLLLIIAAAPILYAIGVYGKLPEIMAVHFGTGGEANGYQSKGSFL ILMSALNLALPLLMKWAPSLDPKRNNYEKFQGFYDLLRILMTVFLSGVFFITILTNLGYD IPINFWVPLGVGALWMVIGNYMGRARPNYTFGIRTPWTLADEEVWRRTHRMAGPIWMLAG IVFIGVSLFPSVVPAWFGIVVILLSVLVPTLYSYIKYRERKN >gi|333606017|gb|AFDH01000069.1| GENE 14 12985 - 13278 337 97 aa, chain - ## HITS:1 COG:BS_yvbA KEGG:ns NR:ns ## COG: BS_yvbA COG0640 # Protein_GI_number: 16080432 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus subtilis # 1 87 1 87 90 113 59.0 8e-26 MNDTFKALSDPTRRQILKLLKEKDLSAGEIADHFQMSKPSISHHLSVMKQAKLVLDERRG QSIIYSLNTTVIQDALGWLMDFTHKDEGGNQHDKRDS >gi|333606017|gb|AFDH01000069.1| GENE 15 13355 - 14125 839 256 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGKTLYSLFRSLSKYLIKIDKGCASNVNQTTDLKRLQEHHIRLSQLMSPLYLLIPLVFWA FFDYQGVGVTVKPVLLGAAGWIAALALRGPVSLLAARMPAEKGRLLLVSSSGPLEELVRL VTLLAAGLTIGSAASIGIGWAAIEIVYTLVTLFAVASLSKRTDEKAMQAKAMLEAQGTYG AHPAWGLIERVFASAYHIGAALCIARYPWSAVILIPLHSLLNLAVLAAAKKSLAQAEAIA AFVGTTVLAIGWQLYL >gi|333606017|gb|AFDH01000069.1| GENE 16 14299 - 14940 594 213 aa, chain - ## HITS:1 COG:BS_ysxC KEGG:ns NR:ns ## COG: BS_ysxC COG0218 # Protein_GI_number: 16079871 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Bacillus subtilis # 1 193 1 193 195 256 64.0 2e-68 MKVNQAEFIISAVGPGQYPEDALPEIALAGRSNVGKSSLINRMISRKNLARTSSQPGKTQ TLNYYRINDDLYFVDLPGYGYAKVSKTKRAEWGKFIENYLLKREPLKAVMQLVDLRHPPS KDDQAMYTWLKHMDVPVIVVATKADKVPKGKWQKHAKIIKDDLEFDRSGPFIIFSSETGM GKDELWEILESAIGWGQPQPDSEALPESAPSEE >gi|333606017|gb|AFDH01000069.1| GENE 17 15010 - 17349 2711 779 aa, chain - ## HITS:1 COG:BH3050 KEGG:ns NR:ns ## COG: BH3050 COG0466 # Protein_GI_number: 15615612 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ATP-dependent Lon protease, bacterial type # Organism: Bacillus halodurans # 9 771 7 770 774 1029 70.0 0 MGPNKTRIRRLPLLPLRGLLVYPSMVLHLDVGREKSVKALEKAMIEDSMILLCSQAEVNI EEPAKEDIYRVGTISKVRQMLKLPNGTIRVLVEGVVRAEIAEYIANDEFYEVNAKELPEE EVNDAEIDALMRTVLNQFEHYITLSKKVTPETLAAVSDIDEPGRLADVICSHLSLKIKDK QDILETVDVRSRLEKLLSILNNEREVLELERKISQRVKKQMEKTQKEYYLREQMKAIQKE LGDKEGRAGEIEELRSQLAASEVPENVQEKIEKEIDRLEKMPSTSAEGSVIRNYIDWLLA LPWTKKTEDDLDIHKAEEILNADHYGLEKPKERVLEYLAVQKLVKKLKGPILCLSGPPGV GKTSIARSIAKSMNREFVRISLGGVRDEAEIRGHRRTYVGAMPGRIIQAMKTAGSVNPVF LLDEIDKMAMDFRGDPAAALLEVLDPEQNNTFSDHFIEVPFDLSNVMFITTANALHNIPR PLLDRMEVLYLPGYTEIEKLEIADSYLLPKQKRDHGLEDGQMVMNRDALLQVIREYTREA GVRNLEQQLAAICRKTAKKIVSDPGRTVEVTVDTVKEDLGPPKFRYNMAEEQDQIGAVTG LAWTEVGGDTLVIEVTVMPGSGKLTLTGKLGDVMKESAQAAFSYTRSRAEQLKIAPDFHE KNDIHIHIPEGAIPKDGPSAGITMGTALISALTNIPVSSQVAMTGEITLRGRVLPIGGLK EKALAAHRAGIRTILLPKDNEKDIRDIPESVRNDLTFIPVAHMDQVLEHALVKEVDLKA >gi|333606017|gb|AFDH01000069.1| GENE 18 17499 - 19265 1629 588 aa, chain - ## HITS:1 COG:BS_lonB KEGG:ns NR:ns ## COG: BS_lonB COG1067 # Protein_GI_number: 16079873 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted ATP-dependent protease # Organism: Bacillus subtilis # 15 545 1 529 552 731 67.0 0 MYEIGPERTEDKMDMSFSMILMLIQVFFAVVIGMYFWNLLRNQQTNRSAIDRESKKELEK LRKLRSVSLTKPLAEKTRPSSMQDIVGQKEGLKALKAALCGPNPQHVLIYGPPGVGKTAA ARVVLEEAKKNPQSPFRNEAKFTEIDATTARFDERGIADPLIGSVHDPIYQGAGAMGVAG IPQPKPGAVTKAHGGILFIDEIGELHPIQMNKLLKVLEDRKVFLESAYYNSEDNNIPNFI HDIFQNGLPADFRLVGATTRTPNEIPPAIRSRCMEIFFRPLLPEEIGEIAANALAKIGFP ANESAIGVVKRYATNGREAVNVIQLAAGLALTDKREEVTAADIEWVVNSSQIQPRPERKI PSEPQVGFVNGLAVYGPNLGTLLELEVIAIPAARPGSGSFNITGVVDEEEMGGGSRTLRR KSMARGSVENVLTVLKRMGLRTSDYDLHINFPGGTPIDGPSAGIAMATAIASALHQIPVD NKLAMTGEMSIHGKVKPVGGVVAKVEAAFQAGATRVFIPKENWQELFADLPGVEVIAVES VEEVLSLALGLQIASNVIPMPAAGEQMMPGTMPFLHAGPTDGSESAKS >gi|333606017|gb|AFDH01000069.1| GENE 19 19389 - 20312 608 307 aa, chain + ## HITS:1 COG:BH0239 KEGG:ns NR:ns ## COG: BH0239 COG0860 # Protein_GI_number: 15612802 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: N-acetylmuramoyl-L-alanine amidase # Organism: Bacillus halodurans # 88 290 30 234 238 97 31.0 3e-20 MFTKRLLTGSCLAACITGLSLLAVACGTPNQLAETTPHTSGTALQASKLAADAKKSLTTG KAHAESLPDIMEPATTPDSPLNAQPPKSASKTNSHINPPDVLIDVGHGGIDGGAVHGDLL EKDINLAVAKQSYQLLTEAGYRVVLNRDKDYALSDDNKWLNNRSRHIRDLAQRMQMANDL KPKLLISLHVNSSFSRSKKGPYVLHQNSAGSLFLATQIQERLNAISGTRHLPILGKTYYL LKRAQSPSVIVEIGFITNADDRSRMTSAEGQQKIAAAIRDAVAAYIAHGDLGPGPGGSQN NGSAPAK >gi|333606017|gb|AFDH01000069.1| GENE 20 20499 - 21647 1045 382 aa, chain - ## HITS:1 COG:BH1401 KEGG:ns NR:ns ## COG: BH1401 COG0821 # Protein_GI_number: 15613964 # Func_class: I Lipid transport and metabolism # Function: Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis # Organism: Bacillus halodurans # 3 354 6 357 367 522 76.0 1e-148 MFHRKDTRPVRVGDLTIGGSDEVIIQSMCTTKTADVKATVAEIHRLEEAGCQLVRVTVNN MEAADAVKEIKKQINIPLVSDIHFDHRLALAAIENGIDKVRINPGNIGRRSKVEAVVKAC KERGIPIRIGVNAGSLENHLLEKYGYPTPEAMVESALFHIGILEELDFHDIIVSLKASDV PMAIAAYTQAAQAFNYPLHLGITEAGTLFSGTVKSAAGLGALLSMGIGSTMRISLSADPV EEVKVARELLKTFGLITNAATLISCPTCGRLDIDLFSIANEVEAYIANLKVPIKVSVLGC AVNGPGEAREADIGIAGARGEGLLFRYGEMVRKVPEAELLNELKKEIDIIVHEFNRTGEI PGRRQHQERIELAQKQAQAQHS >gi|333606017|gb|AFDH01000069.1| GENE 21 21795 - 23060 264 421 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 [Bacillus selenitireducens MLS10] # 161 409 255 460 466 106 31 3e-22 MFKFNDEKGQLKCSFCGKSQDQVRKLVAGPGVYICDECIELCTEIVEEELGHEEELDLKD IPKPKDICGILDQYVIGQDQAKKSLSVAVYNHYKRINSQSKLEEVELQKSNIILVGPTGS GKTLLAQTLAKILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAERGIIYI DEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNI LFICGGAFDGLEQIIKRRIGKKVIGFSSDGLKTDLKPGEYLSMVLPEDLLKFGLIPEFVG RLPVVSTLEPLDEAALVRILTEPKNALVKQYQKMLDMDNVKLEFDAESLDAIAKEAIKRN TGARGLRAIIESIMLDVMFDVPSRTDVTNCTVTKDSVQDKLTPILSSQEGQEVNKKKEES A >gi|333606017|gb|AFDH01000069.1| GENE 22 23073 - 23666 376 197 aa, chain - ## HITS:1 COG:CAC2640 KEGG:ns NR:ns ## COG: CAC2640 COG0740 # Protein_GI_number: 15895898 # Func_class: O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Protease subunit of ATP-dependent Clp proteases # Organism: Clostridium acetobutylicum # 1 192 1 192 193 295 71.0 4e-80 MSLIPMVVEQEARGERSYDIYSRLLKDRIIFIGSAIDDDVANLVIAQLLFLQSQDAEKDI HVYINSPGGSVTAGLGIYDTMQHIKPDVSTICVGMAASMGSLLLTAGAPGKRFALPNSEV MIHQPLGGVRGQASDIKIHADWIIKTKQKLNNIYVKHTGQPYDKIDRDTDRDNFMSAEDA KAYGLIDEVITRSDLKS >gi|333606017|gb|AFDH01000069.1| GENE 23 23869 - 25236 1425 455 aa, chain - ## HITS:1 COG:BH3053 KEGG:ns NR:ns ## COG: BH3053 COG0544 # Protein_GI_number: 15615615 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) # Organism: Bacillus halodurans # 1 426 1 427 431 408 60.0 1e-113 MKASWEKIEKNTAVLDIEVEAEQVADALDRAFKKVVAKVNVPGFRKGKVPRSIFEKRFGI ESLYQDALDIILPEAYMQAVQETGIEPVDRPEVDVEQFGKGQALKFKAKVAVKPEVELGD YKGIAIPAADSAVTPKEIDEELERLQQRHAELVVVEEGAAANGDITIIDFEGFVNGEAFE GGKAEKYSLELGSNSFIPGFEEQIVGMTKDEEKDIEVTFPEEYHSEQLKGQAATFKVKLH DIKRKNLPELDDEFAKDVSEFDTLEEYKQDIAKNLEEKKKQDAEVQRETAVVEKAAANAN VEIPASMIETELDQMVSEFERRLRMQGMTLDLYFQFSGQNVDVLKSQMREDAEKRVRNNL VLEAIAIAEKIEATDEDVNAELDRLAEQYQKSVEELRSIFEANGSLEGIKQDLAVRKTVD FLLANSTEEKEKPAKKESKAKKAAKEEAKEEEAAE >gi|333606017|gb|AFDH01000069.1| GENE 24 25391 - 26305 931 304 aa, chain - ## HITS:1 COG:no KEGG:PPSC2_c4175 NR:ns ## KEGG: PPSC2_c4175 # Name: not_defined # Def: protein # Organism: P.polymyxa_SC2 # Pathway: not_defined # 1 299 8 305 310 177 36.0 7e-43 MTHSYDNVVLFPKTAASYEKQMTQLLEQERYEEAVRLLRYLLQFARDDAEKQAQWRALLQ WLETMFPETLYDDAVMQEGGEEEEITEEDLKRQSVAGKSAEGRQYVGSLLDMLEDGTDME RQMIALEQLAFAEDDRIDEFVKEWLHTAPSHPFVQFRALQMLKQRGGKGPVVLARAQNKM VLRIEDTPLKLEEFPDRIREMVYRVQQISESEQPDFGFFAEQTWLEFLKTVYGTELYTSM SSCREEEVDVWASALHTVLHESLFGSADREHLREQYGITASMLQAWGEAYACLQSFIQAL YTGG >gi|333606017|gb|AFDH01000069.1| GENE 25 26553 - 27290 577 245 aa, chain - ## HITS:1 COG:BH3320 KEGG:ns NR:ns ## COG: BH3320 COG2120 # Protein_GI_number: 15615882 # Func_class: S Function unknown # Function: Uncharacterized proteins, LmbE homologs # Organism: Bacillus halodurans # 3 195 5 188 227 95 33.0 7e-20 MRKTLLFVFAHPDDESFACGGTMAKYAERGHAVHLACATSGCKGKTGEYTFTCREEIALY REGELRRAAAVLGVERVHFYRYPDGGLAEVREDLLAARVAATILDLQPHLVVTFPPDGVT GHPDHIAISKAVLRAVEELDADGGAAPDLYYASIPNYYDHCGDCGPSECCPITSRVNISE FRSRKGEALQAHKSQVYSVDRAYPGVMHGDYSVIGRYEYFTLVRRGGQPTGLNKCAGEIP VVELV >gi|333606017|gb|AFDH01000069.1| GENE 26 27315 - 28277 1034 320 aa, chain - ## HITS:1 COG:SSO3218 KEGG:ns NR:ns ## COG: SSO3218 COG2971 # Protein_GI_number: 15899921 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted N-acetylglucosamine kinase # Organism: Sulfolobus solfataricus # 8 282 3 255 298 159 36.0 7e-39 MKGRSIPLLAVDGGGTKCLAVFTDRQGKIEGTGRGGSCNYQTTGKEAAVDELVRAMKIAR EDLTEPPAPDETLRVECAVFGMAGLDTGYDRQIIEGLVREALSRAEIQADRVVVENDGLA ALLGATDGKPGVLLIAGTGSIVYGVNGQGRSARAGGWGYRVGDEGSAYWIGKQALTAILQ TLDGRQGPTILARRVLPYLDLRSEEELYNWVYSADYRVDTVAELSLLVSDSAREGDASSL RILEAAADELVYGGRAVIEKLGMKDTSFTLILQGGVLQNNEFVRSRLTKKLREFAPSCNL EEIKKEPIYGVIAQGLSLLP >gi|333606017|gb|AFDH01000069.1| GENE 27 28274 - 29785 1606 503 aa, chain - ## HITS:1 COG:AGl463 KEGG:ns NR:ns ## COG: AGl463 COG0165 # Protein_GI_number: 15890339 # Func_class: E Amino acid transport and metabolism # Function: Argininosuccinate lyase # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 9 476 8 477 504 333 40.0 4e-91 MRNREQILQEEGAVFPGLTYTEAVLKPAFNEAKASLLGPMMAINKAHLIMLKDQGLVTEE EASQIADAIRGLNLEGLRQAEYTGQFEDLFFQVESDLLEAAGDIAGNLHLARSRNDMGIS IYRMVLREKLQTTIRGALALKSQLLAFAEEHAETIMIGYTHTQQAQPTTLAHYIMAVADS LDRDVRRLQAAYANCNRSSMGSAALTTSGFNISRERMQELLGFDELIYNSYDAIGGADYV GEIATAVQLAAINLGRSSQDFLLWCTQEFGVLRVADPYVQISSIMPQKRNPVSFEHMRSL LSSCVGNTQTVLTMMHNTPFGDIVDTEDDMQPYAWKALAVLDQMYRLLSCVIGTIHVDKD VLRKRTEGSFATVTELADTLVRTDNLSFRKAHHIVSGVVKRAVSEGLAANEISLDMVNEI ARQVIGRDLSITEEAFRSSLDPVHFVYIRTLPGGPAPDEIRSTIADRRSRQQTQEAWLRD SQSKTEEALSHLDAALEGWSSGQ >gi|333606017|gb|AFDH01000069.1| GENE 28 29844 - 30590 622 248 aa, chain - ## HITS:1 COG:MK0183 KEGG:ns NR:ns ## COG: MK0183 COG1402 # Protein_GI_number: 20093623 # Func_class: R General function prediction only # Function: Uncharacterized protein, putative amidase # Organism: Methanopyrus kandleri AV19 # 9 179 7 162 224 75 33.0 1e-13 MKALDIHGRHAESAFRNAAFAVVPLGSFEYHGPHSPLGTDFFLAQGFAGLIDPGLKPLVY PAIPYTACPGKTGDYPGTISIDPAVFHRYLSDVLEGICRSGFRRIVLLNAHDGNIGASRT VAEEVTSRWKDASFLLINWWQLAAADAPEKLGFFQGTTGRGHGGPYEMSAVKAFRPDLVH VSEEDAELTPPPPLSPMPYVLVEGTPEGWAGYTGHIRQTSLQAGDWIVGEVTANMNALIA NWLGRPAP >gi|333606017|gb|AFDH01000069.1| GENE 29 30756 - 33308 2689 850 aa, chain - ## HITS:1 COG:AGl453_1 KEGG:ns NR:ns ## COG: AGl453_1 COG2120 # Protein_GI_number: 15890334 # Func_class: S Function unknown # Function: Uncharacterized proteins, LmbE homologs # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 37 227 28 218 237 169 43.0 2e-41 MSQASANRWMKKWVAAAVSLTVVGTVALPAAPQTASADRGVVDLWKSIKPLTTIASAMNT GAHPDDEHSATLAYVSLGQGVDTSSVIANRGEGGQNEIGSELGNALGIIRTRELQEASKI TNITLANLSVKLDDPIYDFGFSKSPDETLEKWGESVAYERLIRQIRQKRPDILIPAFLNE DSTHGHHRAINVLTVRAFKDAGNPAIFPAQLKEGLAVWQPKKLYLPATDKDYDVALPVGD YNEIYGASYSQLGEESRFMHKSQGMGRHVDEGPGNSYYKLAGTAGDNKTAVSKSSSLFDG ISFTFEDLAKELDTKGKDNKIVKDLKTLQQDANEVIAAYPKFANVAREVHEMKADVKSAI ENVEKSTLDSSVKTDLLHRLQVKTDQLNKASMEAASLTVKVKPVSGELVAGQTAKVAVTA HSGGSVDISDIAMKLNVPEGWTAKPAGDAEFKKLGYNQTVKTEFEVTVPAKVADFNPYAL PLISADVTYTAYGTQAAVHAVPDNAVAVLPATSLTLSPEAAVFNTLKPDEAVPVKVTARN YAPGASKTTVALKAPEGWTVEPASQDVSFAAKNETKAIEFTVKAPKGVKPGKVDISAVAK EGQTDTSRTVQVITYPHIGTTYYVKPATLTIQAFDLNVSKDLKVGYVSSGFDNIDAVLRQ VGVNVTNLDAKAIQFGDLSQYDTIVLGIRAYAFRPELIPSNQRLLDYAKNGGNLVVQYHK PEDKWTPDLAPYPIKIGQPLIQWRVTDENSKVTMLAPDHKIFNTPNKITDADWQNWIQDR SAYNPAEWGKEYTELISNGDPGEKEFTGTFLSADYGKGTYTYSSLVWYREMPSLVPGSIR MFVNMISLKQ >gi|333606017|gb|AFDH01000069.1| GENE 30 33442 - 35187 2019 581 aa, chain - ## HITS:1 COG:AGl586 KEGG:ns NR:ns ## COG: AGl586 COG1178 # Protein_GI_number: 15890409 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+ transport system, permease component # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 20 573 21 553 561 201 29.0 3e-51 MQTNKPQAKQQPAIRPNSRWTTITTSPYFVYVLIAPLFLILLAYVIYPFFQTFLQSVKLE GAFSFKNYARFFSLDHTSNLEALWNSVYISVLSVITCGIVGVAMAFLLERYEFPGRKILS VLAIVPMALPPLIGVLSFSFLYGDSGIIPRALQKLFDLDHAPLALKGIWGVIVVHTFTMY TYFYMTASTAIRGLDPSLEEAAANLGAGRLLIWRRVILPMLTPAIIAASLLVFMISMASY TAPLVFGIDRTLTMQIYLSRTNGDLDMAATQSTLLSIVSILFLIMMRWYQNARNYQNMSK GVSVHRTEVKSKAGKYTAMVLSFIATLVLMLPILVIVLLSFSEDSTWTVQVLPPEYTLQH FKDLFTDPKTWRPIANSFKMSFVATIGNLLFGVAAAYAIVRMKFKGKTLLDILIMLPWAL PGTVVAVNLITAFSEPNVFSFNQVLIGSFWILPLAYFVRHLPLIFRSTSSTLMQMDSSVE EAARNLGASWWYSFRRVVFPMALSGILAGTLLAMVEGLGEFVASILLYTNNTTPMSVEIF QRMYAFEFGTACAYGVLQIVMIILVLFVSRKLTGGNAGSAI >gi|333606017|gb|AFDH01000069.1| GENE 31 35201 - 36283 1192 360 aa, chain - ## HITS:1 COG:APE1732 KEGG:ns NR:ns ## COG: APE1732 COG3839 # Protein_GI_number: 14601591 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, ATPase components # Organism: Aeropyrum pernix # 1 325 1 320 358 296 48.0 5e-80 MIEVKLDKVSKQFNGARGVENVDIHIQPGEFFTFLGPSGCGKTTTLRMIAGFYYPTEGRI MFGENNVTYTPPNKRNTGMVFQNYALFPHMTVFENIAFGLQVRKQSKAEIMDKVTRAQKL VHLDGYGDRRIDQLSGGQQQRVALARALVIEPNILLLDEPLSNLDAKLREETRLEIKRLQ LELGITTIYVTHDQAEAMSMSDRIMVMKDGVVQQIGTPHDIYNRPVNRFVASFIGESNLW EGTVERLEGDTVYVRTSSDTLITGFAANASPECRLAQGSKVTVSVRPESIREAAASERGL ENILAGKVLMSEFTGVSVNYVAQVGTLPIKAMFIGPGQRMRHRDEDIAFAVPKESVYFVE >gi|333606017|gb|AFDH01000069.1| GENE 32 36427 - 37515 333 362 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|167854980|ref|ZP_02477755.1| 50S ribosomal protein L13 [Haemophilus parasuis 29755] # 42 357 22 343 346 132 29 3e-30 MKKKMTKWTSLTLIAAMAVGLSACGGGDDGAKKGAEGAGGGAASGSQKLVIYTARDKNVV DEILPRFKEKNPGIDVEVMTMGGQQVLERIRGEKSNPQADFWWGGTQSSFITGAEEGLLE PYKPTFADNVAAENKDAQDRWYGEMLLPEVIMYNSQALKKEDAPKDWDELLDAKYKDKLL IRGVMASGTMRTIYSSMIYRQDPADPQKGYDWLKKLDANTKEYTQDPTNLYLKMARQEGT LSLWNLQDILIQKEMKKQPFDFIYPASGAPILVDGVGIVKGAKNMDAAKKFYEFLFDKEE LKKKAEKLFQIPTRTDINKDEFPAWLKGIETKPLQLDWKVLASKEKEWMQYWDENIKGKG KK >gi|333606017|gb|AFDH01000069.1| GENE 33 37547 - 38746 272 399 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116517028|ref|YP_816079.1| glucokinase [Streptococcus pneumoniae D39] # 86 382 5 319 319 109 26 3e-23 MIGKGKTGNTKLVKQMNREGILYQLRQHPRLSRAELSVRTKLSRPCVSSLVDEMIHEGLI HEVGTGESKGGRKPILLEYNVQAYTVVGAVFEGSELEMAIADMKGELLHHVHTRLEQPVD GDSALEALKTNLDTLLEKSGFGRDRVIGIGVGLPGITQKRSGTVSYAPSTGWMNLPVGKE IEERLGIPVILDNDVNMMTMGEFYEGAGSGVSSLVYMYVGTGIGAGIIIDKQFYRGSKEA AGEIGYMLIGGDRLRRQGEFGVFEKNYSVIGIGDKAKAAGLTVDPGRSILRQLGEQADQG SRQARTLLEDVYIHWASGIANTVSVLDPELLILSGEMVHLSESGLARIRELLAQWVPVLP DIQLAGLRERAGLLGAVHSVLEAFPSAQPARSSGSAGAD >gi|333606017|gb|AFDH01000069.1| GENE 34 39020 - 39148 228 42 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MAKVSKATKGKKYEVNAEFAEEMEAKNVKHTAQNNLSHGTEK >gi|333606017|gb|AFDH01000069.1| GENE 35 39238 - 39351 79 37 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MDSHFISKLHDTQRKDERNRRTQGKNRPEKRLPNKQH >gi|333606017|gb|AFDH01000069.1| GENE 36 39512 - 39865 424 117 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_5888 NR:ns ## KEGG: GYMC10_5888 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 113 1 113 114 79 38.0 4e-14 MKRKYARAQIDYLAAKEQFLAASQQADKKLNDMRQNGAEIGQKEMEDAIERSGFHKAFNE LRHAENRLIEWSHFTIKNEGEFKENKAAFEKLYNEVKTKPEARAVLVDMAMRLEAEA >gi|333606017|gb|AFDH01000069.1| GENE 37 40107 - 41951 1999 614 aa, chain + ## HITS:1 COG:BH1508 KEGG:ns NR:ns ## COG: BH1508 COG0367 # Protein_GI_number: 15614071 # Func_class: E Amino acid transport and metabolism # Function: Asparagine synthase (glutamine-hydrolyzing) # Organism: Bacillus halodurans # 1 613 1 613 615 708 52.0 0 MCGITGWIDWRKDLTTSSSILENMTETLVHRGPDASGTWISGHCALGHRRLSVMDPLNGA QPMIRKDGDRTYSIVYNGELYNAPELRSELEHRGHRFATSCDTEVLLAAFVEWGRSCVER LNGIFAFAAWNEQEQTLFLARDRLGVKPLFYSHTDGAFLFGSEPKAILAHPDIKTEVGAE GLAEIFAVGPARTPGHGIYRNLAELKPGHFMVYDRSGLTIRPYWKLENRPHTENVEETAL HIRELLADTARRQLVSDVPVCTLLSGGLDSSALTTLAAHHYRDSGSGVLNTYSVDYADND KNFKENAFQPNSDAPWIKRMTEYLGTEHHYIEFDTPELFESLRTVVLARDTPGMADIDGS LYLFCREIKKGATVALSGEAADEIFGGYPWFHREDALNANTFPWSLSLPQRVGILSRDFA DWIKPEAYVRGRYEQALAEVPRQAGETREQNRMREMSYLNITRFMPTLLDRKDRMSMAVG LEVRVPFCDHRLVEYVWNIPWDIKTAGEREKGILRKALVGVLPEDVLARKKSPYPKTHNP NYATAVKQQALEILSDPSSPLLPFVDAKTLRAMAAPGAESTEFPWFGQLMSGPQMFAYLI QVDTWLREYKVSIR >gi|333606017|gb|AFDH01000069.1| GENE 38 42217 - 42819 730 200 aa, chain - ## HITS:1 COG:BS_yvfU KEGG:ns NR:ns ## COG: BS_yvfU COG2197 # Protein_GI_number: 16080459 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Bacillus subtilis # 1 199 2 200 200 208 55.0 5e-54 MKVIVAEDQGMLRGALSALLDLEDDIEVIGQAADGAEALEMIRTLRPDLCIMDIEMPKMS GLDVAEALQKSKDPCGVVILTTFSRSGYFQRAMRAGARGFLLKDSPVSELAAALRDVQAG RRAVSPELALTFWEAENPLTEREREVLKLAREGLSSGEIASRLFLSGGTVRNYLSEAIQK LEAKNRIDAIAAAEKNGWLD >gi|333606017|gb|AFDH01000069.1| GENE 39 42816 - 43967 1172 383 aa, chain - ## HITS:1 COG:BS_yvfT KEGG:ns NR:ns ## COG: BS_yvfT COG4585 # Protein_GI_number: 16080460 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Bacillus subtilis # 46 374 1 326 328 231 41.0 1e-60 MFRRQPARPREGPPFIFTIIWLVYLIFPVVSVLQLPFPEKILGSGLLIAFVAAYLTSFNQ AAGRYWFILFQTIVIGFLAIRYNENFIYLAFYPSPVIGMLRSVRQMAAAIAGLFLMFVAV GWHYKLMNDVDLFLQLLPALIIILIMPVAMRIGRRSKELRGKLQLANEEIARLSKIEERQ RISRDLHDTLGHTLSLITLKGELAEKMIPKNPEKAVREVQDIQATSRAALKQVRELVSDM NMVTIREEFDRAKQILAAGGIVLELKAGEGAEDEAPPLIGNILGMCLREAVTNVVKHSKA KVCIVEWASDEEGYRLIVSDNGVGFERDERQPDLGTNGLRGMKERLKLVDGHCTFESAAG RGTRVVFTIPKVTKKGEKEAGGE >gi|333606017|gb|AFDH01000069.1| GENE 40 43968 - 44723 929 251 aa, chain - ## HITS:1 COG:BS_yvfS KEGG:ns NR:ns ## COG: BS_yvfS COG0842 # Protein_GI_number: 16080461 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Bacillus subtilis # 12 251 7 245 245 180 39.0 3e-45 MNATILKATMAQCRAELLRTFRNKRFIFFSIVMPVAFYFLFTSTMGSDTKIGSVDWTSYY LMSMTVYGVIGASLTSFAQRISRERTQGWVRLLSITPLPSWSYMVSKVAAQGVINLFIIL MMFIIGGLGKQVDLPVSVWIESFLWIWIGGFSFMALGTLLGSMRNPDVVQVLTMILYMGL SILGGLWFPTASMSGTLQTIAKFTPTYRLGQGAWNLIGGGSIDWTGVLILAVYVVVFVIL SSYIIKRQEAV >gi|333606017|gb|AFDH01000069.1| GENE 41 44740 - 45636 341 298 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 1 293 1 302 305 135 32 3e-31 MTTAIELMQVTKQFKGKKAVDGLTLTVEQGTVLALLGPNGAGKTTTISMILGLQEPTSGT VKLLGGHPKDQRVRDRIGAMLQDVSVIDNLKVAETIDLFRHYYANPLSLEQLLLISGLEA ERNKMASALSGGQQRRLGFAMAAAGDPEIIFLDEPTVGMDVTSRQLFWDTIRAMAARGKT VVLTTHYLEEADQLADRVVVINNGKLVADGTPSEIKAETTGRVISFTAGAGVTHDLLRAF PGVSDIKWNGRRVEMFGPDTDRLLTALIDKRIDMKDIEVRSGGLEDAFQTLIQNTNAG >gi|333606017|gb|AFDH01000069.1| GENE 42 45891 - 46271 183 126 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148360063|ref|YP_001251270.1| ribosomal protein Ham1 [Legionella pneumophila str. Corby] # 31 116 103 187 194 75 51 7e-13 PGAAGQAASAGEPSAADRGAARAPGLPDGPKAADAAAPQVLSTARFVCALALVDPLRGDT LEAEGTCEGVIIAEPRGTDGFGYDPLFYLPERGVTMAELPLEEKNAISHRAAALEQFFER HSGRLT Prediction of potential genes in microbial genomes Time: Sun Jul 17 09:22:42 2011 Seq name: gi|333605980|gb|AFDH01000070.1| Paenibacillus sp. HGF7 contig00025, whole genome shotgun sequence Length of sequence - 45154 bp Number of predicted genes - 35, with homology - 32 Number of transcription units - 18, operones - 7 average op.length - 3.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 13/0.000 - CDS 3 - 1064 405 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 2 1 Op 2 49/0.000 - CDS 1064 - 1957 448 ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 3 1 Op 3 38/0.000 - CDS 1954 - 2898 651 ## COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 4 1 Op 4 2/0.000 - CDS 2900 - 4510 1124 ## COG0747 ABC-type dipeptide transport system, periplasmic component 5 1 Op 5 4/0.000 - CDS 4556 - 5929 490 ## COG4408 Uncharacterized protein conserved in bacteria 6 1 Op 6 2/0.000 - CDS 5922 - 6740 488 ## COG0500 SAM-dependent methyltransferases - Prom 6822 - 6881 6.2 - Term 6988 - 7030 5.5 7 1 Op 7 . - CDS 7165 - 7569 501 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes - Prom 7593 - 7652 6.7 8 2 Tu 1 . - CDS 7687 - 12237 3708 ## COG3525 N-acetyl-beta-hexosaminidase - Prom 12401 - 12460 7.0 - Term 12512 - 12557 7.9 9 3 Op 1 . - CDS 12626 - 12973 296 ## 10 3 Op 2 . - CDS 12964 - 14055 1083 ## BcerKBAB4_3068 hypothetical protein 11 3 Op 3 . - CDS 14033 - 14548 315 ## COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog - Prom 14598 - 14657 2.1 - Term 14637 - 14663 1.0 12 4 Op 1 7/0.000 - CDS 14737 - 15609 1071 ## COG0395 ABC-type sugar transport system, permease component 13 4 Op 2 . - CDS 15625 - 16575 902 ## COG4209 ABC-type polysaccharide transport system, permease component - Prom 16819 - 16878 3.7 + Prom 16578 - 16637 3.6 14 5 Op 1 7/0.000 + CDS 16719 - 18557 1728 ## COG2972 Predicted signal transduction protein with a C-terminal ATPase domain 15 5 Op 2 2/0.000 + CDS 18538 - 20157 1667 ## COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain 16 5 Op 3 . + CDS 20257 - 21918 1835 ## COG1653 ABC-type sugar transport system, periplasmic component + Term 21937 - 21983 14.0 + Prom 21940 - 21999 2.0 17 6 Tu 1 . + CDS 22070 - 22546 82 ## + Term 22559 - 22604 2.2 18 7 Tu 1 . - CDS 22620 - 23156 339 ## COG3832 Uncharacterized conserved protein - Prom 23224 - 23283 6.7 + Prom 23304 - 23363 4.4 19 8 Tu 1 . + CDS 23480 - 24139 660 ## BcerKBAB4_5493 hypothetical protein + Term 24207 - 24253 8.3 + Prom 24220 - 24279 5.9 20 9 Tu 1 . + CDS 24400 - 24819 279 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - Term 24900 - 24933 0.2 21 10 Tu 1 . - CDS 25037 - 26086 203 ## PROTEIN SUPPORTED gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 - Prom 26150 - 26209 7.3 + Prom 26155 - 26214 5.0 22 11 Op 1 14/0.000 + CDS 26282 - 27073 200 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 23 11 Op 2 33/0.000 + CDS 27078 - 27998 1144 ## COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component + Term 28015 - 28050 3.7 24 11 Op 3 20/0.000 + CDS 28072 - 29082 1004 ## COG0609 ABC-type Fe3+-siderophore transport system, permease component 25 11 Op 4 . + CDS 29079 - 30086 1214 ## COG0609 ABC-type Fe3+-siderophore transport system, permease component + Term 30089 - 30131 7.5 - Term 30078 - 30119 8.7 26 12 Op 1 1/0.000 - CDS 30355 - 30969 557 ## COG3764 Sortase (surface protein transpeptidase) - Prom 31010 - 31069 2.5 - Term 31037 - 31097 17.0 27 12 Op 2 . - CDS 31122 - 34856 2733 ## COG4932 Predicted outer membrane protein - Term 35172 - 35213 5.0 28 13 Tu 1 . - CDS 35252 - 36400 944 ## COG3947 Response regulator containing CheY-like receiver and SARP domains - Prom 36580 - 36639 3.1 + Prom 36348 - 36407 3.6 29 14 Tu 1 . + CDS 36651 - 39851 2395 ## COG0642 Signal transduction histidine kinase - Term 39807 - 39858 16.9 30 15 Op 1 . - CDS 39881 - 40366 674 ## COG3238 Uncharacterized protein conserved in bacteria 31 15 Op 2 . - CDS 40434 - 41132 675 ## COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases 32 15 Op 3 . - CDS 41185 - 41610 633 ## COG3238 Uncharacterized protein conserved in bacteria - Prom 41722 - 41781 2.4 - Term 41793 - 41831 0.7 33 16 Tu 1 . - CDS 41886 - 43616 1961 ## COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases - Prom 43679 - 43738 7.6 + Prom 43782 - 43841 6.2 34 17 Tu 1 . + CDS 43887 - 44816 825 ## COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component + Term 44994 - 45035 3.1 - Term 44980 - 45021 6.1 35 18 Tu 1 . - CDS 45036 - 45152 150 ## Predicted protein(s) >gi|333605980|gb|AFDH01000070.1| GENE 1 3 - 1064 405 354 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 26 354 1 314 563 160 31 1e-38 MRTEHEIRSPGAIGASLSAVELGRVIPSSDEPVLVIKELCIRRRGHDRSQPIIQDISFSI RKGETLAIVGESGSGKSVTAAAITGLLPSSLQVALGTITFQGEDLLTLRGRKRNGLLGRR IGWVSQDYQSSFTPLIKIGAQLTEMIRVHQRMPSKEAETLALSWLEKVMLPAKRVYGSYP FQLSGGQLQRAALAAAFMLHPALLIADEPTTALDALSADRILGLLDELRAQTECAVLFIS HDLRHVHRTADRVAVMREGRLLEMGEAAEICRLPQHPYTQQLWDACPRIIPHGRLTSMQN NDSLCESQTAPNPPLMTVVELVKSYPNKSEQEAAVRQLSFEIYGGECLGLVGES >gi|333605980|gb|AFDH01000070.1| GENE 2 1064 - 1957 448 297 aa, chain - ## HITS:1 COG:BH1798 KEGG:ns NR:ns ## COG: BH1798 COG1173 # Protein_GI_number: 15614361 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Bacillus halodurans # 26 287 19 280 283 254 47.0 2e-67 MNGRIANSTASAPNTAWNRLRHNRMACVGILMIALFLLPALFGGWLAPHDPLLISMSERL KPSSLQYPLGTDHLGRCIWSRLLAGTPVTLGLSFLVVTVVMVIGIPIGILSGYRGGRTDA YFMRLADAAAALPEFLLAVTVAGFLGPGLMKVLLAVSCIKWISYARVVRGTIMSEKKQDY ILASIVAGSTPWAVNRRHLIRHVASPLAVLAALDVGRTILLISALSYLGLGVQPPAPEWG GMLSEGRPYFQAAPQLMIYPGLTILAVVIALNLLSDGLRDALDVQSDRYSRRKRRYS >gi|333605980|gb|AFDH01000070.1| GENE 3 1954 - 2898 651 314 aa, chain - ## HITS:1 COG:BH1797 KEGG:ns NR:ns ## COG: BH1797 COG0601 # Protein_GI_number: 15614360 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Bacillus halodurans # 1 307 1 307 315 260 46.0 2e-69 MIKLAAGRIAYLACVLFFLSIVTFALMKLAPGDPVRAVLKADEGAVSAVDAAAVKEKLGL NMPIHEQYVRWFAGVLRLDLGQSYTTGRDVFDILIERMPATFSLMAGAMLVVLLTAVPLG ILGAKYQGRWPDHISRLIALLGISMPTFWLGLLLIYLFSYQLNWLPVMGGGDLRHLVLPS LTLGFVMVPEYIRLLRSGLLDTLSQPYIRAARGRGIPEWRITVNHALRAALLPVISLFGL SIGSLLAGSVVTESLFGWPGLGSLAMEAFTQRNYPIIQGYVLFSGLCIGLANLLSDISLG YMDPRIRYSKGREA >gi|333605980|gb|AFDH01000070.1| GENE 4 2900 - 4510 1124 536 aa, chain - ## HITS:1 COG:BH1796 KEGG:ns NR:ns ## COG: BH1796 COG0747 # Protein_GI_number: 15614359 # Func_class: E Amino acid transport and metabolism # Function: ABC-type dipeptide transport system, periplasmic component # Organism: Bacillus halodurans # 23 536 31 528 528 387 39.0 1e-107 MYDLFKRKGGSRPRLRTTSAMIVLCAVLLLTGCNQAAPLKEGQPSETGDATQREAVKKLT IVHSLPSDTLDPHNTWVPLRAGVSETLVRLDEKMQVVPWLAAKWETKDSRIWSFTLRDGI FFQDGTKLDAAAAKASFERGIADSAALSASLKVESIEANGQELIFKTKEPFPAFPAELVH PTASIISTAAEKAVGKEAFNKSPVGTGPFKVASFIPGKEVTLVRNAEYWDGKAKLSEIKY QFNSDANVRTLALQSKQAGIVYHLAPESLAAIQQDGQLSIQSVTSLRTHYFTYNPKSATV QDIRVRQAIDKLIDRDAIVKDVMLGHALPANGPFNSTLPFGRKGGYQKLDPQGALELLES AGYKKNAKDKLEKDGKPLTLKLIAFSGINPELPLIPQLLQSEAAKVGIELKIESVEYPDV YIKDHNDWDLSTSSYLTSPRGDGGSFLNSAYVPGESYNPAGVKVEKLAPLLKALNETGEV EKRNMLTQQAVEVITEAIPHSYIIYPNILVGINKGISGWKPGAEEFYIVTNKLDVN >gi|333605980|gb|AFDH01000070.1| GENE 5 4556 - 5929 490 457 aa, chain - ## HITS:1 COG:PA4835 KEGG:ns NR:ns ## COG: PA4835 COG4408 # Protein_GI_number: 15600028 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Pseudomonas aeruginosa # 11 437 8 428 433 367 43.0 1e-101 MTSPEQVIPPLGNTLIVGAGPAGIHIAVDVGRGWCGRLGLANRKGAHSTRILCELDRQGY TLSSVVQIQSKRHLTGEVRLDDYYDGFDGIDDKWHTVILCTPSDSYSDVIGALRLENLSQ VKRIVLLSPGIGSNLLVQSLVRPSGSDIEILSLSTYYGASRFAFEEGQCTVLRSIVRGLK RKVTVGSSKPDSRAIGDIKRFIESLGIQFESVSHPVAAESRSITTYVHPAFFINEFSMSE IFSRIPSRKYMYKLYPEGPITPQAIQSMLLLWKEIGELVTRLHAEPINLLKFLNDDNYPV HETTLSREDIEGFTRADPIKQEYLLYVRYASILIDPFAEPDEQGKYPDFSAFPYKQISKD SEGKWIIPRVPYEDYKKIKLVERLGKKLNLSMPQTSAFITKFESKLSSFVEEEGIEHFQP DLFTDTTEREADLILSELELSWDAHATRHAELGIKTE >gi|333605980|gb|AFDH01000070.1| GENE 6 5922 - 6740 488 272 aa, chain - ## HITS:1 COG:PA4836 KEGG:ns NR:ns ## COG: PA4836 COG0500 # Protein_GI_number: 15600029 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Pseudomonas aeruginosa # 1 259 1 259 263 172 34.0 5e-43 MKSKYAFLLSLQSLEYEINQLNAFSREYPECFELLKIKLDDLCRFMVNDENEKRWHEWGT HDEVRQYSEKLRETSVKALCDMEKYQSRLLINQELEATSYIEQLSHAVQEELDLFGIGPA SRVLFIGSGAYPLSALTIAKESSAKVLCLDIDEEAVKLGFQVASASGLHTLVEFAGGRLS DHPFIREATHVFVASLVANKLEIVEEVKRTARPDTKIIVRYGNGLKSLFNYPLHADLSYE WNLTPVVRNNSLYDTVLMESKRLTRERTIAFD >gi|333605980|gb|AFDH01000070.1| GENE 7 7165 - 7569 501 134 aa, chain - ## HITS:1 COG:PA3470 KEGG:ns NR:ns ## COG: PA3470 COG0494 # Protein_GI_number: 15598666 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Pseudomonas aeruginosa # 10 118 11 128 152 68 34.0 2e-12 MTAASIDKIAWIYVDNGRILSARSKGKDTYYIPGGKRDPGETDTETLVREVEEEVSVRIK PETVSHFGTFEAQAHGKEEGVLVRMACYQADFEGDLSPASEIEELVWLAYGDREHVSPVS RLIFDRLHELKLLL >gi|333605980|gb|AFDH01000070.1| GENE 8 7687 - 12237 3708 1516 aa, chain - ## HITS:1 COG:XF0847 KEGG:ns NR:ns ## COG: XF0847 COG3525 # Protein_GI_number: 15837449 # Func_class: G Carbohydrate transport and metabolism # Function: N-acetyl-beta-hexosaminidase # Organism: Xylella fastidiosa 9a5c # 315 682 83 484 841 102 23.0 7e-21 MKTNQGMQAKLSFMLTFVLVFSIVLSAGQPAVYAAQNPLGLGTDAQTGSAPLDTPVTEET YGGSADRPFPDVRPGPLPLTAPPVGSENFALKKSVKVSGNEVDYGLYPEMAVDGDMGTRW SSAKTDDQWFEVDLGGKKEIGQVAIHWQTPAKSYRVLTSVYGDVWENIRENDGLIQCEGG KEVLNFPSREARYVKFQGVERAPASDGILYGYSFYEFEVYKEDPIAKIISGIQKLDPVVK GQTSLNLPAMPPGYKISVYGSDALPVIDKEGTVHPPLSDRTVQLLLQVESESDPSRKGVT GNIGVHVPGLFTQTPGLNPEPKVIPSLREWAGGTGRFALSASSRIVISDPALRQTAETVR ADLKEMTGLNPEIVQGKASAGDVYMTLDPAMKHLGAGGYLLDVKESVTITAPETKGVFWA TRSVLQILKGDTERRHLPVGTARDYPKYETRGLMIDVARKFYTIDFLRDYVKLLAWYKMT DLQIHLNDDVGVPFKNGQRAAFRLESERYPGLASSDGHYTKEEFRELQRLGSDYRINVIP EIDTPGHSRIFTTYDPSLGTDHTLDISKPATVDFVKSLFDEYIDGYNNGEPTFLGPDVHI GTDEYGGPSKEVFRGYMDTLIKHINSKGKHPYLWGGLNEYAGATPISNEATMDIWYEPYG GPKQAMDLGYDIVNSDTNYMYLVPRLYRDYLNTPFLYRQWEPVKWPGVTLPYGLPRLKGG MFAIWNDISYETGVSMDDSHVRMLPAMQVLSEKMWQGAREGSDYDAFMATAAEIGEAPGV NRLHRIHVDQPDGLVIRYPFDGGTEDTSGNKFHGKGENIAFTEGKYGKAAQFRGGKSYVE TSIDTMGFGWTVSMWIKPERDNPDDAVLMESPIGKIKLKQGKTGKLGFSKEDYDSVFNYE VPADKWTHLYLTGDAMGVSLYVNGNEYAEKLALPVRRIQTLMLPVRKIGSETNAFRGAID NVHIYNEFLPLLDVNNLALHQKAESSPLEAPEHTPGNTIDGNLFTRWSSAYDDASWMIVD LGEAQTINKIQIGWETAAEKFKLLVSEDKQTWTNVKGGDKILSSAGKLDTIDFQPVKARY VKFQGVERKPVDGTKYGYSIYEFEVFGDDKMAPYQELIAEAGKLLSTGKGSPDIRRQVES LLLEYPVRFETVIDTFRDLNARLKESINHPGTDPDPGSPGDGSSETGTGGGSSGAGGTQP DGETGVLTLKPGEGGTTRLGSEISIEIPAGASKETVTFGIRKITAPSGLNGGGQERVSPV FEVTRSAGTSLIKPIKVTLAYEAGKTGAGRQAAVFTYDPGRKEWTRLGGASAGGKISVEA SDTGIFAVFAVKEDGANPPPLFRDTAGHWAEEAVSRAAAEGIADGYPDGTFRPDARVTRA EFTVLLARALHLEGNAALPGFADAADIGAWAGTAAAQAVEAGIVDGYEDGTFRPGADITR AEMAVMAARALKLPAEPTAQTGFADDGDIPVWARGYVGAAAGLGLVAGRDGGIFAPGDPA SRAEAVTLLLRAAGRK >gi|333605980|gb|AFDH01000070.1| GENE 9 12626 - 12973 296 115 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MELTSWFAGFKKKRPGNGKNGRPGSPFLKESWAGYLSCSLAVVQLAVINLTFLFNVWTLD VLEFLFAASTLSALTGLFLRNRSKKLCLWALAIQLVYVLFLAVVFVTSWMINPKP >gi|333605980|gb|AFDH01000070.1| GENE 10 12964 - 14055 1083 363 aa, chain - ## HITS:1 COG:no KEGG:BcerKBAB4_3068 NR:ns ## KEGG: BcerKBAB4_3068 # Name: not_defined # Def: hypothetical protein # Organism: B.weihenstephanensis # Pathway: not_defined # 35 363 11 337 340 240 40.0 6e-62 MNHQDPFRERLKAFREGTLSEADEREMEEELDKLDAYNALLEEEMGGSIPGKQSEEMIIG RSKWRARWTSTLITLVVLLLILPVAYMGTLVYYALHPSLNANKLIEVLDKTVYVTEPNMT LEEMQIETQVHPLSLTVDMELWKKVGNRDIRAGKQSASFILGRPNGFPKAEYLTDAPLPK VPTVANRMLVHPGFPSLPYLTGTEWRRLEKLPEGTVAEAYVSLNRVTGTDEALKALQSGT VEVVWYAVDTGFEQRGVDSGGRVIGPIGYPAQEDWDAWSPFNDTKENAEQFMDTLVFLKN YEKMAALFSRSQSLELDKRIRYLKDNGIKTYGAVVTGPVKDLAALRNNALVRGIKVGEVR LWN >gi|333605980|gb|AFDH01000070.1| GENE 11 14033 - 14548 315 171 aa, chain - ## HITS:1 COG:BS_yhdM KEGG:ns NR:ns ## COG: BS_yhdM COG1595 # Protein_GI_number: 16078017 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog # Organism: Bacillus subtilis # 1 156 1 155 163 123 38.0 2e-28 MSLEDIYRKYFKDLYAYLFSLCKDHHLTEDILQETFYRAYVNLEDYSGPRIKSWLFTVAK NTYIDYLRKHKRMDLKQDEFFAQVPVKGSTEQTFLEKEGKEKIVQAVSSLPDKYRDAVRL CDVEEMSCQAAADVLNLKLSTLKSLLFRGRQKLRQMKRKESEPGHEPPGSV >gi|333605980|gb|AFDH01000070.1| GENE 12 14737 - 15609 1071 290 aa, chain - ## HITS:1 COG:BH1066 KEGG:ns NR:ns ## COG: BH1066 COG0395 # Protein_GI_number: 15613629 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Bacillus halodurans # 3 290 4 293 293 303 55.0 3e-82 MYHKTLPYRIFSLFNNVFLTVLAILCLLPLYHLLMVSLSASAPANAGLVTFWPIGFTFEA YAKTFDNANFLSSLWVSVQRTVIGTALALVVNTIAAYALSKESHVFRARNLYLWYFVVTM LFSGGLIPSYILILKLGLMNTLMALILPGLVGVFNIILLMNFFRTVPKDLEEAAFIDGAG QFRTFLSVYLPVSLPVVATVSLFMMVGHWNSYFDGIIYIRDSEKLPLATFMQTIIVQADM SKLDPAAVASLSQRTIRASQIFISALPILLVYPFLQRYFVTGIVVGAVKE >gi|333605980|gb|AFDH01000070.1| GENE 13 15625 - 16575 902 316 aa, chain - ## HITS:1 COG:BH1065 KEGG:ns NR:ns ## COG: BH1065 COG4209 # Protein_GI_number: 15613628 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type polysaccharide transport system, permease component # Organism: Bacillus halodurans # 1 316 1 317 317 362 58.0 1e-100 MEANTVQQVNAGKARRTDRQKGYKQPWILHLMVLPAAVLVFIFSYIPMSGIIMAFQDYKP ALGISGSPWVGLKHFRYMWENDYFLKITWNTLFFACSKMVMNLIIPFFFALLLNEVRKMA LKRTIQTLVYLPHFLSWVTLSGILIDMLAQTGLINQFLVAVFGIKPIFFLGDGSWFRFTI IFSDVWKEFGFNTIIFLAALSGINPSLYEAAEVDGAGRWKQTFYITIPALIPITIVIATL ALGNVLNANFDQVFNLYSPLIYQQGDIIDTFVYREGLLSGQFSFATAVSLFKSFISLILI AVSYRLAYRFAGYRIF >gi|333605980|gb|AFDH01000070.1| GENE 14 16719 - 18557 1728 612 aa, chain + ## HITS:1 COG:BS_yesM KEGG:ns NR:ns ## COG: BS_yesM COG2972 # Protein_GI_number: 16077762 # Func_class: T Signal transduction mechanisms # Function: Predicted signal transduction protein with a C-terminal ATPase domain # Organism: Bacillus subtilis # 29 566 20 549 577 165 24.0 2e-40 MGFGLAGIVTKVRGKARYRYSLFAKMNTLIIVLFIPIILVYTYSNDVTFNVVSTELQKSS TKQLTFLSGQIDSRISQMMDFSLVFAKDPNVSKFNGLNIWEDRYDRMQTRYVIQEKMALQ SRVTDIWPARYAVYSQQNKDVISNYKSPAFDEDYLQNNRSGKWTYGDGSGKAPGGLDAFY WFYNDSLAQPGMLTGSSLVIEASFSYENIQNMLDTYKAGGQGDPFFYHKGDTPILNRSAD KRLSEQLISYLDEHSPDNTTQYVIKLDGKNYLVSSVKSTYLDWHLVDVVPLDQILGPISF SRDLFYFSMFLLFVVGISASILLYRNVQKPILKLINGLRRVQRGDYSVRLHTRDHNEFSF LFYRFNDMSRQIQDLIENVFNEKIRAREATLKQLQAQINPHFLYNCLGYIINMAQMKDEE AVVAMAYNLSAYYRYTTRMERETASLEEEIKLLVNYLDIQKLRNGRIDYRIDIPEEMRSQ SVPRLILQPIVENSVIHGVGKSYTSGEIRITGEISDGFCRIYVDDDGPGLNAEQESALNR KMREPLQEEMGCGLWNTNQRIMHQFGSRSYLAFVKSPLGGLRTEIVWEMPPAAHTSDYSR PQGDLRHANDHR >gi|333605980|gb|AFDH01000070.1| GENE 15 18538 - 20157 1667 539 aa, chain + ## HITS:1 COG:BH1123 KEGG:ns NR:ns ## COG: BH1123 COG4753 # Protein_GI_number: 15613686 # Func_class: T Signal transduction mechanisms # Function: Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain # Organism: Bacillus halodurans # 2 531 3 521 526 139 23.0 1e-32 MQMIIVDDEAHWVDNLSLHKPWHELGIEQVHRAYSAFEALQIIDTHPIDIMISDVQMPEM TGIELIERIRIRDKKMKCIILSGHSEFEYAKKALRHNAVDYLLKPPTDQELFDAVKTAMD QLNAEWELISSLERTRHTLRENLPILRGQLLLDALQGRRLSTDEWHRKLSDYGLPFDFEN SALMLVRLEEEFGRYKNNGQPLIEYAIMNMAEEIMGEFMEVWGVKEEHGYLVFLLQLKES AGGAGQETLLEKLSQQLQHKVKQFLKGSLSIVITEWFAFPEQLPDRFRQASSYFREIVGD ERDFVVRVNEVNHTPAQGPLNALYVPPSLINLLEAGHWDAAEAKLAAVCTELEEKWPESW EHCMEAGFLITSSFSNLAHRSGYTLTKLLGTEDMGALQSGEAFVTIKKLGKWSLSVLNKL KEVSSSSVKDSRSQYVKKIQEYADKHLHEDVSLRALADHINLHPTHLSKIYKIETGEGIS DYIARLRMERACHLLKATGKKVYEISMEIGYMDPAYFIKVFKRHFGVTPQEYRDGALLP >gi|333605980|gb|AFDH01000070.1| GENE 16 20257 - 21918 1835 553 aa, chain + ## HITS:1 COG:BH1064 KEGG:ns NR:ns ## COG: BH1064 COG1653 # Protein_GI_number: 15613627 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Bacillus halodurans # 63 550 55 548 550 315 36.0 2e-85 MVKFRKLGSVLITAGLVTLTACGGASNDTSKGSSASSGAEAAFSKGKYDPPIEISSVLMP KKYVQGDTKENNVHDRWMLETLGIKHKDTWYPANDDQYKQKLQLAIASGEKLPDFVSVPT NPVLTNQLIDSGQFMPIDELFDKYANKILKDHSSAHPELWYPFTRDGKKYNMPILEYTDN DDTLLWLREDWMEKLNLQAPKTIADLENIMDKFKNQNPDGLAPKDVFPLAISLKNNTNTW MGSLDWLFGAYGTIQEQWNKDSSGSLEYGSTNPGAKEALAKLKEWMDKGYIHTDSALWDE AKSAESWTKGTAGILPGANWVPDWPAPDLLKNVKGAKYKAYPIPAGPNGQIGTKWQNSGV NASIMINKDAKHPEAIFLYYNYLLDNLANPAAGSNYEYGFAKGYDWDLIDGKPTSDKEKI KDFSNEFPFLTGPARIPDLYMKTLVKLADGKTPETPYEKQMAEFRKPENWAAAKVVMSQR DIRKQNYFTGAATPTMVSKWNLLRQSEMETFNKIIYGKLPITAFDEFVANWKANGGEQIT KEVNDWYKSVSSK >gi|333605980|gb|AFDH01000070.1| GENE 17 22070 - 22546 82 158 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MPSTFQDMKNSVETGWDIVIWSESYGPGDFAVLAACVYLGCAQAYLGQRLEDLVKKVGAD AVKQALSNKGKIFGAGEFEVSAGDAYWSTYIKVWNPFKRRHEKITMDRYIRLYVRMRRKH REGFAAFTPSPEYQEYTHLPDYSGGPVYPIGYDGRLQL >gi|333605980|gb|AFDH01000070.1| GENE 18 22620 - 23156 339 178 aa, chain - ## HITS:1 COG:lin0420 KEGG:ns NR:ns ## COG: lin0420 COG3832 # Protein_GI_number: 16799497 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 27 155 28 157 160 89 36.0 3e-18 MLAILEKAPDGYVARFDRCFRHSAEAVWSMLTENDKLALWFSELEVGELREGGFIRFNMP DGSFEKLDILELHPPSILEYTWGEDRVRFELYPESEGCRLVMTEKLQAITAHTPKDLAGW HVCLEVVRLLLDGEKMPSQKKEWEAWYEKYTRHVDNVSSRRGQAGGLRQYRRECGTDR >gi|333605980|gb|AFDH01000070.1| GENE 19 23480 - 24139 660 219 aa, chain + ## HITS:1 COG:no KEGG:BcerKBAB4_5493 NR:ns ## KEGG: BcerKBAB4_5493 # Name: not_defined # Def: hypothetical protein # Organism: B.weihenstephanensis # Pathway: not_defined # 11 183 20 188 224 85 38.0 1e-15 MKKIGISLLSLFTFLFFASSAFAVTGQGAARLITTTKHTAIQGTLTIPSTWNVSNDGSYI AFYLGLDVVCEGGISFKPSTGWNKFLNCGGGEGSASNKTAPLTVQPNPGDTISLKLVNNL NDTATLYVNGVAAYTNLPVANAGKLKAATTVKMVHSTQDNQDKNSYTNASFSNVLVQSQS GGSYTAFPSNISPDFPLGGQGDYVINSSNPLGTTLKAGK >gi|333605980|gb|AFDH01000070.1| GENE 20 24400 - 24819 279 139 aa, chain + ## HITS:1 COG:AGpAbx82 KEGG:ns NR:ns ## COG: AGpAbx82 COG0454 # Protein_GI_number: 16119372 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 8 135 30 155 159 99 41.0 1e-21 MNVSYERPGPVEYAELRRLAGLAPLEETLAEAGLNGSIFTVVVRDENSRLLGMGRIVGDG ACYFQVVDVLVHPSCRDQGTGIEDTLMKEIVRYLEENTSEGSQVIVISDTPGIRLYQSFG FKLMYPDFYGMSRITRPPV >gi|333605980|gb|AFDH01000070.1| GENE 21 25037 - 26086 203 349 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 [Streptococcus pneumoniae SP6-BS73] # 6 291 1 277 306 82 25 3e-15 MKEKELFDVTVIGGGPAGLYSAFYSGLRELKTKIIEFQPHLGGKIHVYPEKMIWDVGGHT PLTGAQLIEKLVEQGLTFRPEVVLNEKVESINRDDEGNFVLHTASGETHYSKTVIVAVGG GILKPQRLQIEGAERYEVSNLNYTVKSLQRFKDKTVIISGGGNSAVDWANELESVAKQVY LTHRKDALTGHEAQVKQLMEGSAVCFLNSSITRLIAASSHDIIEYVELTNHLTGELTHVP VDEVIINHGYERDSTLLKSSGLDIELADDFYIAGNASSVSTVEGLYAAGDILKHDGKLHL IAGAFQDAANAVNQAKQYIQPGSDKTGMVSSHNEIFKKRNRELVKQMMG >gi|333605980|gb|AFDH01000070.1| GENE 22 26282 - 27073 200 263 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 230 1 229 245 81 26 7e-15 MVRLYTDELNIGYGERLIVKNLSVSFPDKKITTIIGANGCGKSTLLKAATRIISHQSGSI LLDGELISKENTKVLARKMAILPQSPESANGLTVGELVSYGRFPYQTGFGRLSKKDYEVI DWALEVTGTNEFKYRPVDALSGGQRQRVWIAMALAQETDIIFLDEPTTYLDMAHQLEVLE LLQKLNLEQGRTIVMVLHDLNQAARFADYIIALKDGEVVKAGNCEEVISHEVLKQVFQID AEIGRDPRTNKPMCCTYNLIKGD >gi|333605980|gb|AFDH01000070.1| GENE 23 27078 - 27998 1144 306 aa, chain + ## HITS:1 COG:BH3890 KEGG:ns NR:ns ## COG: BH3890 COG0614 # Protein_GI_number: 15616452 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-hydroxamate transport system, periplasmic component # Organism: Bacillus halodurans # 16 300 20 301 308 376 64.0 1e-104 MKKLLLPILLVLVLALSACGAKRETTADKGGASDNKQPATITYQSESGPVEVPANPQRVI VLSSFTGNVMALNVNLAGVDSWSKKNPRFDKLKDVQEVSDESLEKIIELKPDLIIGLSNI KNADKLKQIAPTVTFTYGKVDYLTQHLEIGKLLNKEKEAKAWVDDFKKRAAKAGDEIKAK IGADKTISVIESFDKQLYVFGDNWGRGTEILYQEMKLKMPDKVKEMALKDGYYALSAEVL PQYAGDYVIFSKNPDADHSFQQTETYKNIPAVKNGHVFEANAKEFYFNDPLTLDYQLDFF IKNLGK >gi|333605980|gb|AFDH01000070.1| GENE 24 28072 - 29082 1004 336 aa, chain + ## HITS:1 COG:CAC0789 KEGG:ns NR:ns ## COG: CAC0789 COG0609 # Protein_GI_number: 15894076 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-siderophore transport system, permease component # Organism: Clostridium acetobutylicum # 1 333 1 332 334 343 58.0 3e-94 MNKQNPRILPFSFKLAAGILVFAGLFMAAMLFGAADVTVKDVWLALTSSLANGQITLLRE IRLPREVAAIFVGAALAVSGAVMQGMTRNPLADPGLLGLTAGANAALAFTIAFVPAVGYF GIMVACFVGAVIGAGLVFGIGTLKKGGFSPLRIVLAGASVSAFLYAVSEGIGLVFKISKD VSMWTAGGLVGTTWGQLQAIAPFIATGILIALVLSKQLTILSLSEEVAVGLGQKTLRVKA VLFVVVVLLAGASVALVGNMAFIGLLVPHIVRAVVGTDYRFILPMSAVCGASFMLFADTL ARTIHAPYETPAATIVAMLGLPFFLLIERKGGRALS >gi|333605980|gb|AFDH01000070.1| GENE 25 29079 - 30086 1214 335 aa, chain + ## HITS:1 COG:CAC0788 KEGG:ns NR:ns ## COG: CAC0788 COG0609 # Protein_GI_number: 15894075 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-siderophore transport system, permease component # Organism: Clostridium acetobutylicum # 9 335 10 336 336 364 64.0 1e-100 MIHPSLIRKQRLLVAGAIVLIALTILAGMGLGYSSLSYDRLLPTLLGQGSFKENFVLFSI RLPRIIITLLAGMGLALSGAVLQGITRNDLADPGIIGINSGAGVAIAVFFLFVPIDPGSF VYLLPVVAFLGALITACLIYLLSYSRKTGLQPVRLVLIGVGFSMALSGVMIVIISSAERV KVDFIAKWLAGSIWGADWPFIGAILPWLVLLIPFVLYKANRLNLLGMSESVAVGVGVAVE KERAVLLLAAIALAASVVSVTGGISFIGLMAPHIAKSLVGPRNQMFIPLAILLGGWMLLV ADTIGRNIIEPDGIAAGIMVALIGAPYFIYLLLKK >gi|333605980|gb|AFDH01000070.1| GENE 26 30355 - 30969 557 204 aa, chain - ## HITS:1 COG:BH2127 KEGG:ns NR:ns ## COG: BH2127 COG3764 # Protein_GI_number: 15614690 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sortase (surface protein transpeptidase) # Organism: Bacillus halodurans # 3 201 10 192 194 126 36.0 3e-29 MCVILGIAVFLYPTLQDRYENIQQSRLLEQWQTNLRIIDQSEPENETDASSAGQAPSAAE DPISLAKDGKHVEGVLVIDKIQLKLPVLTDATTENMKISLASISNTGKPGQIGNYAIAGH RNFAYGKNFNRLDEMAVGDTIEVDTSSDKYIYQVKEKRYVLPHQVEVLQGNGKDSEITLI TCHPMKNPTHRIIVKGTLIKSAAV >gi|333605980|gb|AFDH01000070.1| GENE 27 31122 - 34856 2733 1244 aa, chain - ## HITS:1 COG:BH2014 KEGG:ns NR:ns ## COG: BH2014 COG4932 # Protein_GI_number: 15614577 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted outer membrane protein # Organism: Bacillus halodurans # 46 980 241 1178 1816 596 40.0 1e-169 MLKQKISAALVALLVFVQVFNGFGQWSAANAAGITGSILDSVTLAVYDKAGNVVTDNVYE QGSKVQVDYHWSLPDGHGYKDGDTFRFALPAEFLLFNNISGPLLIESDDVGSFTVNKDTR QVVMTFNSYIETHDDVRGILTIQTQFDKQKITGSTLQKIKIPIKGGEQVISLQFKPNVAS TIGKSGVPQGYNAKHIDWTVDVNKELKSVENAVMTDPLPAGLSVPVTAAVYNLDVNLDGT VVQGALVDPGKYTLDTSGGTVKVSFADSPITTAYRVQFTTPVTDGSPATFNNTATFKGSN QSAVSASATVTVQRGSALSKSSVSYDAATQTIDWAIKYNYNERAISQTNAVLTDLFDNAH ELVANSVKVYPVTLDNAGNETVGGEIPAGDYTVTSASAAGKNGFKLQFNQPVSTAYKVTY QTKTADRVIADGTIANKVTSGSGDSATGSRTIKQVVLVKSMDAANYQDKTASWTLTVNGD KQPMSEVVITDAFPNKGMKIVPGTFKVNQGSTVLNSPADYTLDGTVTEDSGFKLTFAGPL SETVTISYKTEYNFDWITPPGSTKNFVNKADITWKDSTSAAQTKSVSATFTPRSEAKNNG FKNGSYNASTKQLSWTIGVNYNGKPLTSPSVEDLLESKQTLVPGSLALYTMNIAANGNPS LGTIIDSSEYSYSVDSANKLVVTLLKPSSTPFYIVYKTSLDGELIDSTVNNTAELFDAAA PVSEKLTAKVTIPKGGEYVNKTGSQSGDKINWTIHINRGQSTVADAKIVDTPTENQLLMP ESFRLYTTTVSANGDVVKSTEAAKGNDYKLVILTDDDGKQTFELSFLHEITAPYVLDYQS LIVANDQDTVSNKVSFSGNNVSVVSKETTDSIIVGVSSGSGTGSGIRGSLTVKKTDAADS SHLLQGAVFELYRKSGSSRSLIGSGTTDSTGTLIFKKLLAGDYIIKEKAAPSGYVLDNTD RPVTINSTAGFTLNVTNAKVSVPTPTPTPPVTPTPTPTPTPTPTPPVTPTPTPPVTPTPT PPVTPTPTPSVTPTPTPSSSPSDNSSSETPTPTPTPSVTPTPTPSITPTPTPSVTPTPTP SVTSTPTPSVTPTPTPPETPAPTPSEKPTPAPTSSPAAGKVTTDKDTPTGGKVDVPEGQK PLIDKQPEHGKVTIDENGRWTYTPDPGYTGKDRFTVAAKDSQGNETILALLDVTVQTKPV PGQGNLPAAVLPQTGETGRWSVQAAGIALIVLGLLWRRKLALKK >gi|333605980|gb|AFDH01000070.1| GENE 28 35252 - 36400 944 382 aa, chain - ## HITS:1 COG:BH2016 KEGG:ns NR:ns ## COG: BH2016 COG3947 # Protein_GI_number: 15614579 # Func_class: T Signal transduction mechanisms # Function: Response regulator containing CheY-like receiver and SARP domains # Organism: Bacillus halodurans # 47 376 5 334 337 255 41.0 9e-68 MLKAIILEDEPLAALQMNRMLEAIPGIEVAGSYSDADEAIAKAEGLQPDVAFIDIHLPGK SGIQAAELLQEVCPELDIVFVTAYDKYAVHAFDLNAVDYVMKPLRKERLLKTVQRLTDKT QLFRRARTDDSSRSMRIRLLQTIQFERLNGTVERLKWRTAKAQELFAYLIHHRGQAIRKS DLQEMFWPDLEAKKAAAHLYTTIYHIRQALKHTGTDIGIRSMNIKEGYMLDAGDIRIDSE EWERDLSRLESVHTGNAAEHRKVLDLYPGDFLADCDYLWAENERQRLRILWIEHARKLGE FYAGHGQVNEAVMIYNRMQEKYPHFEGSYFPLMKLYASLRDRKAVEEQFNRLGALLKEMD VLPEGSVQMWMEEWREGAASVL >gi|333605980|gb|AFDH01000070.1| GENE 29 36651 - 39851 2395 1066 aa, chain + ## HITS:1 COG:BH2013_1 KEGG:ns NR:ns ## COG: BH2013_1 COG0642 # Protein_GI_number: 15614576 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Bacillus halodurans # 162 654 36 538 585 393 40.0 1e-109 MKTYKKLRVFIWVLLFFLSLGGLRLIWSQMTSIPAHPPAVKGSLNLQNWDFAENPLVTLD GEWEFYPNQLIPFESGSAAPARMQVLQVPGSWEQAFATEAKDSYRFGSYRLRVSLPRDTK LTFSIRLPDIRSASGVFVNGQPIHLIGRPADTGEGFIPGYHPSSVTFTADSGQADLIIHA ASPSSMKAGGITGSVRFGEEGALTRTVWIGIGSQLAIALVLLIHSAYAVLLYLIGAQRKS VLTFASLGLFAAVAVLLDDGKPLAVWLNMGYETATRTILIAYTGIALCLIQLARLWFLKQ TGKRIFRMLQFVYVLYTLFILFAPAYMVSRSSLFLTLSGLSTDLVFLVLMLRTVKREKED GMFLLLGITAVVSNVFWAAIEPVTGPEPDFYPLDLLAALFALAAYWFKRYFRTSARTAEL AERLQKEDKRKDDFLANTSHELRNPLHGILNMAQTVLHTEQDRLTEESRKNMELLLTVGQ RMSLLLNDLLDITLLKENRVRLQPKELKIQSVAAGVADMLRYMTGGKPLELKLDIPETFP PVLADENRLTQILFNLVHNAIKFTNEGTIVIEARVRDGHAEIRIADTGIGMDGQQLVQLF QPYEQADSGITSPGGGMGLGLGICKSLVELHGGVLEASSVPGQGSVFSFTLPLAEPFRAA VYPAYPAGPDKNGPFGHDALSPAPLAAAEEELSPASPTGQAAQTARQEQTGWPEKRPSIL VVDDDPVNLTVLRNLLASEGYRVETAASGREALSLLDGNGWDLVISDVMMPLMSGYELTW TIRGRHTLAELPVLLLTARSSPQDITAGFLAGANDYVTKPLGAYDLKARVRSLIGLKLSV EERLRMEAAWLQAQIKPHFFFNTINSISILSEIDPAKMRSLLEEFSAYLQNSFDFQNSEQ LIPLQRELELVRSYLAVETVRHGNRLGIHWEIDDIPGLRLPPLSIQPLVENALIHGVPDK KSGGVIRIEVKNRENGTEVRVTDNGTGMDPAILGKLQGVDAGEERRGIGLANTDRRLRHM YGTGLTLESSPGLGTAVSFFIPASCMSGDSLQPRKQQKNSVSPGRD >gi|333605980|gb|AFDH01000070.1| GENE 30 39881 - 40366 674 161 aa, chain - ## HITS:1 COG:CAC3547 KEGG:ns NR:ns ## COG: CAC3547 COG3238 # Protein_GI_number: 15896783 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 15 144 14 143 143 72 33.0 4e-13 MILGIMLAVLAGSLVSLQTVFNSKVNERTGSWATTTLVLGMGFLASLTISLLVEGKETFA LQNMQLWYWVSGMIGVGVVICLVQGMKLLGPTYAISIVLTAQLSFALLWDSLGWLGLEKV PFTLNKLIGVLVIVAGIVLFKFGGRQGAEPSAAKTPQGLPD >gi|333605980|gb|AFDH01000070.1| GENE 31 40434 - 41132 675 232 aa, chain - ## HITS:1 COG:ECs3055 KEGG:ns NR:ns ## COG: ECs3055 COG0664 # Protein_GI_number: 15832309 # Func_class: T Signal transduction mechanisms # Function: cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases # Organism: Escherichia coli O157:H7 # 14 226 1 205 219 67 25.0 1e-11 MKEIQDREQLSRYLREHRLETVFNEALNPHLSLFSFEQGEMICSRGEPARYLYVLVKGKI KIYTSSAEGKTLILCFKTPIEVIGDIEYIRGSDIVNTVEAVSPVHMIGIHHRWLKKYGND HAPLLRFLLGIITQKFYIDSNFSSFNLMYPVEVRLASYLLSVFCEESDNLVRGQLSTTHL MDAANLIGTSYRHLNRVIQKFCSEGLLQRTRGFITIKDREGLSALAGHNIYE >gi|333605980|gb|AFDH01000070.1| GENE 32 41185 - 41610 633 141 aa, chain - ## HITS:1 COG:CAC3547 KEGG:ns NR:ns ## COG: CAC3547 COG3238 # Protein_GI_number: 15896783 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 13 141 13 141 143 75 37.0 2e-14 MKGILFAFLGGACITLQGVANARISHDIGTWQAATITQLTGFLIALVILLFVRDGSLQSF KGIKPLYLIGGALGAVIIFSEVTAIQKIGVTFTIAALLIAQLSLTFLVDINGWFGVAKQK MKLPQFIGIGLMIAGVVILKL >gi|333605980|gb|AFDH01000070.1| GENE 33 41886 - 43616 1961 576 aa, chain - ## HITS:1 COG:BH3234 KEGG:ns NR:ns ## COG: BH3234 COG0365 # Protein_GI_number: 15615796 # Func_class: I Lipid transport and metabolism # Function: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases # Organism: Bacillus halodurans # 9 576 4 571 571 860 71.0 0 MTMQTEEQEIIPVLTSGNNLADYEEAYANFDWADVEKEFTWSRTGKVNIAYEALDRHVEE GRGDKTALIYTDAARNESYTFAQMKTLSDKFGHALRSLGIGKGDRIFVFMPRSPELYTAY IGAVKIGAIVGPLFEAFMEAAVKDRLLDSEAVAIVTTPALKDRIPVSELPALKHVIVVGE NSEPGDREISYDDLMAKASDQLEIEWVGLEDGMQLHYTSGSTGKPKGVLHVHNAMIQHLH TAKTVLDLQPDDIYWCCADPGWVTGTVYGMWAPWLNGTTSLVRGGRFSSNDSYQTIETYK VTVWYWAPTAFRLLMAAGDDLLKQFDLSSLRHILSVGEPLNPEVVRWGMKVFGKRIHDTW WMTETGAQVICNYPAMPIKPGSMGKPIPGVIAAIVDDQGNELPPNRMGNLAVRAPWPSMM RLIWNNPAKYDEYYRLKPWYISGDSAYKDEEGYFWFQGRVDDVINTSGERVGPFEVESKL VEHPAVAEAGVIGKPDPVRGEIIKAFIALRDGYEPSEELIKEIQQFVKKGLAAHAAPREI EFRDKLPKTRSGKIMRRVLKAWELGLPTGDLSTLED >gi|333605980|gb|AFDH01000070.1| GENE 34 43887 - 44816 825 309 aa, chain + ## HITS:1 COG:lin2073 KEGG:ns NR:ns ## COG: lin2073 COG0614 # Protein_GI_number: 16801139 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-hydroxamate transport system, periplasmic component # Organism: Listeria innocua # 22 307 19 309 313 124 30.0 3e-28 MFNLKKSGTLALFILLLLALTAGCGNKESAQPRQQTVTDGMGHQVNLPAEPKNIIASYLE DPLLALGIKPVAQWSVKGGNVQEYLRPQLEGIPAIPSNLPPETVLSFNPDLIILRPEAAA QESLYEQYAKIAPTFVLSKEDADDYKKTLTKMAELLNKKEEAKKALDAYDRKTKESKDSL QRTLGDKKVAVLWLTKKTFYVVNGNVSSGAVLYGDLGLNKPSLLNSLPDSKANWVPVSLE KLAELDADYLFLVNYDKGQAGNLEEDLWKNIPAVKNGHVYEIASTSSWLYNGVIAAEKIV DDVMKALRP >gi|333605980|gb|AFDH01000070.1| GENE 35 45036 - 45152 150 38 aa, chain - ## HITS:0 COG:no KEGG:no NR:no TGKLALEVAASNDRALGLYKSVGFVERSVNDYYRVTVG Prediction of potential genes in microbial genomes Time: Sun Jul 17 09:23:14 2011 Seq name: gi|333605979|gb|AFDH01000071.1| Paenibacillus sp. HGF7 contig00079, whole genome shotgun sequence Length of sequence - 510 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + TRNA 2 - 76 76.0 # Gln TTG 0 0 + TRNA 86 - 161 97.8 # Lys TTT 0 0 + TRNA 174 - 257 69.3 # Leu TAG 0 0 + TRNA 265 - 339 93.2 # Gly GCC 0 0 + TRNA 351 - 427 81.0 # Arg ACG 0 0 + TRNA 437 - 510 79.3 # Pro TGG 0 0 Prediction of potential genes in microbial genomes Time: Sun Jul 17 09:23:21 2011 Seq name: gi|333605959|gb|AFDH01000072.1| Paenibacillus sp. HGF7 contig00009, whole genome shotgun sequence Length of sequence - 21145 bp Number of predicted genes - 18, with homology - 15 Number of transcription units - 10, operones - 4 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 104 - 1582 1679 ## COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain 2 1 Op 2 . - CDS 1643 - 2953 1238 ## COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase 3 1 Op 3 . - CDS 3034 - 4137 968 ## GYMC10_5989 germination protein, Ger(X)C family 4 1 Op 4 . - CDS 4134 - 4367 59 ## 5 1 Op 5 . - CDS 4391 - 5194 755 ## GYMC10_5990 hypothetical protein 6 1 Op 6 . - CDS 5208 - 6569 1242 ## GYMC10_5991 GerA spore germination protein - Term 6771 - 6817 9.0 7 2 Op 1 . - CDS 6888 - 8198 1172 ## Pjdr2_2564 S-layer domain protein 8 2 Op 2 . - CDS 8244 - 8999 974 ## COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 - Prom 9137 - 9196 4.2 - Term 9100 - 9131 2.5 9 3 Op 1 13/0.000 - CDS 9201 - 10985 2080 ## COG0173 Aspartyl-tRNA synthetase 10 3 Op 2 . - CDS 10982 - 12271 1426 ## COG0124 Histidyl-tRNA synthetase - Prom 12336 - 12395 1.7 - Term 12519 - 12571 3.9 11 4 Tu 1 . - CDS 12756 - 13061 319 ## COG1733 Predicted transcriptional regulators - Prom 13261 - 13320 2.6 + Prom 13077 - 13136 4.2 12 5 Tu 1 . + CDS 13299 - 14084 806 ## Pjdr2_3344 hypothetical protein - Term 14114 - 14148 4.3 13 6 Tu 1 . - CDS 14256 - 16238 2214 ## Dred_3110 hypothetical protein - Term 16608 - 16650 7.0 14 7 Tu 1 . - CDS 16652 - 16825 86 ## 15 8 Tu 1 . + CDS 16850 - 17068 103 ## + Term 17267 - 17296 0.5 - Term 16872 - 16897 -0.5 16 9 Op 1 7/0.000 - CDS 16961 - 17404 485 ## COG1490 D-Tyr-tRNAtyr deacylase 17 9 Op 2 . - CDS 17432 - 19618 2176 ## COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases - Prom 19650 - 19709 5.4 + Prom 19769 - 19828 2.8 18 10 Tu 1 . + CDS 19855 - 21111 1036 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 Predicted protein(s) >gi|333605959|gb|AFDH01000072.1| GENE 1 104 - 1582 1679 492 aa, chain - ## HITS:1 COG:BH4038 KEGG:ns NR:ns ## COG: BH4038 COG3263 # Protein_GI_number: 15616600 # Func_class: P Inorganic ion transport and metabolism # Function: NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain # Organism: Bacillus halodurans # 2 474 5 485 490 451 55.0 1e-126 MTEKYIFLIAVLLFAGVLMSKFSSRFGLPALVFFMLVGMGLNRFIYFDNAQLTQWFGLMA LIVILFDGGMHTKWTHVKEVIRPSLMLATLGVLLTTVIVGLSAYWILQVSLKEGLLLGAI VGSTDAAAVFAVLGNQNVKRRLTSTLEAESGTNDPMAVFLTVSLIELIQMPDTSILLLIG SFLWEMGLGLVLGLVIGRLAVWSLNKIDLDSSGLYPVLALAFAIFTYGSTALLHGSGLLA VYVMALRLGNADFAYRFSITRFHEGFAWMMQILMFMLLGLLAFPDDLISIAWQGVALALI LMFVARPVGVFGSMLGTGFQYREKLLISWAGLRGAVPIVLATYPLLAGLEHGRMFFNIVF FIVLLSTLIQGSTISVLSKKLGLTEGSAKNDTHTLELLALGKANAEIIEIKVTENGPVNN RLISDLDLPEEVLITAIVRKGKIITPHGNTELIEGDLLYTLVSKPMREKVKKIFYEESPA IKPADLTPEKGL >gi|333605959|gb|AFDH01000072.1| GENE 2 1643 - 2953 1238 436 aa, chain - ## HITS:1 COG:SP1790 KEGG:ns NR:ns ## COG: SP1790 COG2256 # Protein_GI_number: 15901619 # Func_class: L Replication, recombination and repair # Function: ATPase related to the helicase subunit of the Holliday junction resolvase # Organism: Streptococcus pneumoniae TIGR4 # 19 426 5 408 423 349 45.0 8e-96 MEMDLFSAAAENDSRGKLLADRMRPRTLDEYIGQEHIVGPGKLLRRAIEADQITSIVLYG PPGCGKTTLAHIISEKTSGDFVRLNAVDASVKDVREVIEQAKSAKALYGRRTILFLDEVH RFNSARQDALLPAVEQGTIVFIGATTENPFHYVNGALLSRSTLFQLHGLTEKHARIAMER ALSDEERGLGFLNIEAEEEALAHIAFMAGGDIRRALNALEIAALTTSADADGVVRITLDI AEESIRRPTVKADESTQYDVLSAFHKSVRGSSDAALFWFLYAVEKLGMDPMTFIRRLTVA CSEDIGLANPQAMVQAVSAMEAYHKIGWPEAKYIVCQAILFAVESPKSNSIPLAIGRAMS AMDSIGKAEVPLHLRDTHYKGAEQLGHKGYMYPHNYPGHYVKQAYLPEQLEGEVFFNATE QGMEEKMKINQQRRNR >gi|333605959|gb|AFDH01000072.1| GENE 3 3034 - 4137 968 367 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_5989 NR:ns ## KEGG: GYMC10_5989 # Name: not_defined # Def: germination protein, Ger(X)C family # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 16 364 17 366 369 308 45.0 3e-82 MRYKLLLFIPALLFPLLLGGCNFKDIDKRIFVISMGIDKLDDQKNNLRVSLKLAIPQGNP KEGTEQFDIIVEETKTVADAVRKAKSKVDKELDFGHMKVFLIGENMAHDDIYQIINWGVR RRDIQLITLLAIAKPTALDVQKIKPQSERIPSNALILGLSKSGTESPYIVTEYLFDYQRR LEERGMDPILPIVKAEGDHFRIDQLALMKKHRIGIELSPNETKLYNLLTTKNLKTNLSGK MEGNLYELNLESSRASYKINARPGEEPVLAYEIHIKATLEENESHENMTRSVLDTIEDAT AKEINGQVERFLKRLQKHETDPIGFGLHYMSRRWDNASEWEDWQKIYPKLTFKVDTHVRI HSAGTAH >gi|333605959|gb|AFDH01000072.1| GENE 4 4134 - 4367 59 77 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MAQNLARGLIRFPAAARGSKYIPLGIVVVFATASMWMLKFNQEGLIRSGEIFLEIRLVAE FIFVLLIFYMYRKEKKK >gi|333605959|gb|AFDH01000072.1| GENE 5 4391 - 5194 755 267 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_5990 NR:ns ## KEGG: GYMC10_5990 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 259 10 268 369 194 44.0 4e-48 MIAINALISIIIYVPRILLQHRFDGAWTSILLSVVISYLLIRWFTTMLASFTRQGFPEMM KQYLPNWVNVSVQLLMIGLWFFAGAITLLSFVDITLRYISPDVPAFLVMIGYLIVVCWAC TLNPASILFGLEILLVLNCPIVAFFIIRAITSPMFDWDAVLQTFTFSLQWPSFQAVAAAT FLFTGYINLVVFNRVFEKFHMRGYLLISLSGLLLLLLTMIVPIGMHGSMGVSTYVYPWFS LADSIRIDMFLVERLVFVFTWFTFPFF >gi|333605959|gb|AFDH01000072.1| GENE 6 5208 - 6569 1242 453 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_5991 NR:ns ## KEGG: GYMC10_5991 # Name: not_defined # Def: GerA spore germination protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 9 447 10 448 453 458 53.0 1e-127 MTGTNATTEQIEQWLAEKLALSADLENCELTSDGRTMRLIYMKSLCDSKMIRRFFIAPFF EIRSMDLYVQYISSLPSGIEFTNVVRALDLILSGSVALFVDGKIYLLEALQDVKSSVGDA TVEAIVQGPQDAFTESIFTNLNLVRRRYKSSNLKIENSTVGYLSQTAVSLVYDDRKVDKG ILTDVKDKFSQLKVDKIQSSGELEKALSPQGFRLVPTMMTTERPDRVIDNLSEGKIIILI DTSPFALILPSTFFDFFTAMDDKVQLPFVGFFLLILRYVGLFMTLTLPALYVAFTSYNPE ILKMNLTLLIAGSRASVPYPSFVEVLIMLVMMEFLIEASLRLPKAIGPTATTVGGLILGT ASTEAGLVGSIMIILVAAVAISNFVIPINMMSFSVRFAKYWFVLLAAIFGLLGVVVGVIG SILYLCNLRSFGRPYMRLFHIREQRSGGTDGHQ >gi|333605959|gb|AFDH01000072.1| GENE 7 6888 - 8198 1172 436 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_2564 NR:ns ## KEGG: Pjdr2_2564 # Name: not_defined # Def: S-layer domain protein # Organism: Paenibacillus # Pathway: not_defined # 48 237 431 625 629 95 33.0 3e-18 MAWKKVLLTLSAAAVLTSIAGQAFAAEHREAERAGGSRAEAPREGQAAGAEVGPAAGRLF ADVAPDNRNADAIADLAARGLIEGTASGRFDPDGALTREQFAKLLASAFGLRTSEGPTPF VDLVSAWSTPYISAAYAAGLVDGVTAVKFMPAQPVTRQAAAAMVWRWLEARGVEAPAAAP GPSASDADAWAQASVHNIMALGLRSDSGASYEPKRVMTRGDAAALVSRALALLEATAGER AAKAAQPLTADKAASLIRFSEQKTAELFLSLFDHELASRTKPPFEAIQPALSRYYADPGS WRTFYERHLGGIYEAVAIFPAVSMPVPSFKIVSVTDDRVKVRGKRPEGAYTDSAFLTYTL LKRNGNWVIGGREEEKLTEPFTREEAEGIVVRYYKAGSGLFEREESDRYLFTVTDKGEKL RLSVSKAKGILALEED >gi|333605959|gb|AFDH01000072.1| GENE 8 8244 - 8999 974 251 aa, chain - ## HITS:1 COG:BH1255 KEGG:ns NR:ns ## COG: BH1255 COG1179 # Protein_GI_number: 15613818 # Func_class: H Coenzyme transport and metabolism # Function: Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 # Organism: Bacillus halodurans # 1 244 7 252 259 317 68.0 2e-86 MLHQFSRTELAIGPEGLEVMKGSTVAVLGIGGVGSIAAEALARTGVGRIILIDKDVVDIT NVNRQIHALTTTVGQPKAELMQERIKLINPECDAIALRMFYTEETYEQLFDYKPDYVLDA SDTISYKIHLIKQCLDRKIPMISSMGAANKMDPTKFQVADISKTTMDPIARVVRTKLRKE GIKKGVKVVFSTEEPKKPREDVTQRIVPENAPEIRKAQQPPASNAFVPPVAGLIMVSVCV KDLLHNAGIDV >gi|333605959|gb|AFDH01000072.1| GENE 9 9201 - 10985 2080 594 aa, chain - ## HITS:1 COG:BS_aspS KEGG:ns NR:ns ## COG: BS_aspS COG0173 # Protein_GI_number: 16079809 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Aspartyl-tRNA synthetase # Organism: Bacillus subtilis # 1 588 1 589 592 767 62.0 0 MMLKTHHCGQLTKANIGETVILNGWVQRRRDLGGVLFIDLRDRSGLVQIVFNPDFSGEAL AIGDRARNEYVLAVKGTVVERDAETVNTNLQTGEIEVRITEIEIMNAAKNPPFFIEDGIE IDETLRLKHRYLDLRRPEMQQTLMLRAKAARIFRNFLDENGFLDIETPILTGSTPEGARD YLVPSRVHPGEFFALPQSPQLYKQLLMVSGLERYYQIARCFRDEDLRADRQPEFTQVDIE TSFLSQDQLLDMMEQLIVRLFRETVGAEIPTPFQRLTYAEAMDKYGSDKPDLRFGLELST VTDIVADSDVKVFNMVAKNGGIVKALNAKGCGATWSRKELDDLQPFASRYGGKGLAWITV KEGEWKGPIVKFFKEEEIAALTERLNVEEGDLLVFSADKPKVVYDVLGNLRLKVGRDLGL IDDKAYKFLWVVDFPMFEYDEDEKRYVAMHHPFTRPKDEDLHLFETDPGQMRAQAYDIVL NGYEVGGGSMRIYQREVQEKMFAALGFTPEKAKEKFGFLLEAFEYGTPPHGGMAYGFDRL VMLLAGRTNLRETIAFPKTASASDPLTDAPSEVDEKQLEQLSIRIALKQPAAKA >gi|333605959|gb|AFDH01000072.1| GENE 10 10982 - 12271 1426 429 aa, chain - ## HITS:1 COG:BH1251 KEGG:ns NR:ns ## COG: BH1251 COG0124 # Protein_GI_number: 15613814 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Histidyl-tRNA synthetase # Organism: Bacillus halodurans # 1 423 1 428 428 464 53.0 1e-130 MSMQKPKGTQDIMPGSVEKWQALESKARDLCSRFRYREIRTPIFEHTELFSRGVGETTDI VEKEMYTFQDKGNRSISLRPEGTAGVVRAYVENKLYGEPDISKLFYIGPMFRYEQPQAGR YRQFHQFGIEAFGSEDPSLDAEVIAFGYTFYRELGMTGVSVEINSVGTPEIRGNYKQRLQ AFLEPFKDKLCKDCQSRFDRNPMRILDCKVDQKYFDGAPELLDDLDEACRKHFEAVKRHL TAMEIPFTINPRLVRGLDYYTHTAFEYKAAGIGSIDTIGGGGRYNGLVSEIGGQDQPGVG FGLGLERVLLVLESQGVQLPQPPGLDVYLIGLGQAAEDEIVKRLYELRAHGILAEKDYQG RKMKTQMKSADRSAARFVAILGDDELERGEITVKTMATGEQETIKLEDFAEAILKRTRSR NENGGVQSL >gi|333605959|gb|AFDH01000072.1| GENE 11 12756 - 13061 319 101 aa, chain - ## HITS:1 COG:CAC0849 KEGG:ns NR:ns ## COG: CAC0849 COG1733 # Protein_GI_number: 15894136 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Clostridium acetobutylicum # 1 101 1 101 102 144 71.0 6e-35 MADFHLCPKFENAFELLGKRWTGLIIRVLLSGPKRFKDISDMIPSMSDRMLSERFKELEA AGILIRHVYPETPVRIEYELTEKGKGLEPVMDELQKWAETW >gi|333605959|gb|AFDH01000072.1| GENE 12 13299 - 14084 806 261 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_3344 NR:ns ## KEGG: Pjdr2_3344 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 24 260 32 272 274 219 45.0 1e-55 MLPRFFTRIDKLLAIYGAVAAASFAVTLLFAHQSGEKGPPPPAYAYAQITAPNGVELHVA KTKPERIALKAVKGNIMELSEFGINGGFFWQGNLLSIAVMNDQPVKGAQGEYGSGWFNTG HKRGTLVWDGAARQFTVQQASDAAELKVADRSRYWAQGGISMSLQNEADWRKLAKEENMP ALNEARMRTGIVYDKSNAVWLVVTPTPCTGEQFRAAIAGSLGRSGLVDGVFLDGNGSSQL KVAQASLPGDKRQIYQMIALH >gi|333605959|gb|AFDH01000072.1| GENE 13 14256 - 16238 2214 660 aa, chain - ## HITS:1 COG:no KEGG:Dred_3110 NR:ns ## KEGG: Dred_3110 # Name: not_defined # Def: hypothetical protein # Organism: D.reducens # Pathway: not_defined # 60 646 41 654 672 478 44.0 1e-133 MTKSKSNHSKHAASKSWIVWMCLLIVLTVIAAAAALYWQYRHHNKPKPIAQHTLSEVKSA ANLEKQYDVIVVGTDPEGVTAAVSAARNGQKTLLVDGHDREILGGLMTLGWLNSIDMNYV PNPSVLNPHDVLNKGLFSEWYSKIEGDSFSINTAANAFYDMVRGEKNIDLMLKLKSIEPL LSNQGQQTRVEGITLTKEDGTKQEIRANAVIDATQDGDIAAAAGVPFTYGLEDLGNKNAK MAVTLVFKLKNVTPEVWSQISKHLKTDDDPMSDANEVSAWGYKELYNYPALNPERVKMRG LNIGRQDGDMVLINALQIFNIDGLDAKSRAEAFEIAKKEIPNVVGFLKKNYPEFAGVELA GTAPELYVRETRHIQGEYRLNIIDLLENRDQWDRIAFGSYPVDIQRLAPTDTGMVVTQPE QYAIPFRSIVPKKVDGLLVIGRAASYDTLPHGSARVIPVGMAEGQAAGAAAKLAKDAGLS FRELAASKENIAKLQDMLNKQGVDLKPFSMKPQPFMTHKQYEGLKAAVSMSLVGGGYKNE FELDKVSNPQRMVNYITRMKKIIPSAYGGDPSGSLKGIDEEARKKSALTLDQAAYTMTQG LGIAVSKDAALAELSKRGIVQESSLATIKDKQSLTNGDTFMLILDLHKYAESKGAKPASQ >gi|333605959|gb|AFDH01000072.1| GENE 14 16652 - 16825 86 57 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRRSLKEKQMTQPESQLAHSAYSERIRAGAEQSGMEASGEIAPVQGRFKRTARMPPR >gi|333605959|gb|AFDH01000072.1| GENE 15 16850 - 17068 103 72 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MAIRRKFFSEETALRPAASTFSVSKELPHYASPAPARLSFAFENKRDRSPIGEGDIHHLS ERPRFHMKALCA >gi|333605959|gb|AFDH01000072.1| GENE 16 16961 - 17404 485 147 aa, chain - ## HITS:1 COG:BH1243 KEGG:ns NR:ns ## COG: BH1243 COG1490 # Protein_GI_number: 15613806 # Func_class: J Translation, ribosomal structure and biogenesis # Function: D-Tyr-tRNAtyr deacylase # Organism: Bacillus halodurans # 1 146 1 146 146 207 71.0 4e-54 MKVVVQRSKEAQVTVDGEIVGRIDRGLMLLVGVGHEDTEEDAKYLADKIAGLRIFEDEQE KMNFSVKDIGGSVLSVSQFTLYGDCRKGRRPNFMGAARPEQAEALYDKFNGLLRAQGLHV ETGAFGQMMDVAFTNWGPVTLILESKA >gi|333605959|gb|AFDH01000072.1| GENE 17 17432 - 19618 2176 728 aa, chain - ## HITS:1 COG:BH1242 KEGG:ns NR:ns ## COG: BH1242 COG0317 # Protein_GI_number: 15613805 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Guanosine polyphosphate pyrophosphohydrolases/synthetases # Organism: Bacillus halodurans # 1 727 5 727 728 979 67.0 0 MGIEQLLEKAAQYFKETELNRIKEAYEFAEQAHHGQVRKSGEPYILHPLAVADILVDMQM DVTSIIAALLHDVVEDTTVSLEAVQDKFGRTCAMLVDGLTKLERIKFKTKEEQQNENYRK MFVAMAQDIRVILIKLADRLHNMRTLKYQSEESQRRIADETLEIFCPIAHRLGISAIKWE MEDIALRYLNPQQYYRIVNLMQKKRTEREKYIEDVIRNIQDKLREMGIEGDISGRPKHIY SIHKKMSSRNKQFNEIYDLMALRVIVDNIKDCYAALGIIHTLWKPMPGRFKDYIAMPKPN MYQSLHTTVIGPKGEPLEVQIRTWEMHKTAEYGIAAHWAYKEGNGSPEGTFSDKMQWFRE ILELQKETDNASEFMESMKMDFFTDLVFVFTPKGEVIELPAGAVPLDFAYRIHTEVGNRT IGAKINGRIVPLDHKLKTGDIVEILTSKHSYGPSQDWVKIAQSSHARSKIKQWFKKEKRE ENVAKGREGIERELKRLSFDPQALMTDEKLMEAAKKFAFNDIEDMMSAIGFGGITAAQIC TKLTEKLRKEKEAEEAQALELTNEVKEVKAAPPEKKSRPVSGVRVKGVDNLLIRFARCCN PVPGDDIIGYITRGRGVSVHRTDCTNIPGENTEEGNRVIEVEWADSVESNFHVEIEITGH DRRGLLNEVLQVVSESKTMISAVSGRSDKNKMAMIHMTILIRNIEHLHAVVEKIKRVEDV YSVQRIMQ >gi|333605959|gb|AFDH01000072.1| GENE 18 19855 - 21111 1036 418 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 6 405 5 416 447 403 49 1e-112 MSNRTIGVDERPSLGKTIPLSLQHLFAMFGSTVLVPALFQVNPAIVLLMNGIGTLLYIFL CKGKIPAYLGSSFAFISPVLGVLATKSYNSALGGFIIVGIVFVLVALLVKLVGTKWIDVV FPPAAMGAIVAVIGLELAPTAAGMAGFLPKDGAPLDGKALLVSIVTLLIALLGNVLFRGF MKIIPILVSIVIGYILAAKVGIVDFAKVWEASWFALPQVYTPQFDLTSIVLILPAALVVI AEHIGHLVVTGNIVGKDLSKDPGLDRSLLGNGISTILSGFVGSTPNTTYGENIGVLALTR VYSTWVIGGAACFAIVLSFSGKLAALIMTIPTPVMGGVSLLLFGVIGASGIRMLVESKVD YSKATNLILTSIVLIIGLSGAALKIGSFELKGMALATVSAIVLSLFFKLVEVLKLSND Prediction of potential genes in microbial genomes Time: Sun Jul 17 09:24:23 2011 Seq name: gi|333605934|gb|AFDH01000073.1| Paenibacillus sp. HGF7 contig00030, whole genome shotgun sequence Length of sequence - 34990 bp Number of predicted genes - 23, with homology - 19 Number of transcription units - 14, operones - 5 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 1 - 859 447 ## COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] 2 1 Op 2 . - CDS 874 - 1809 434 ## COG2513 PEP phosphonomutase and related enzymes 3 1 Op 3 . - CDS 1815 - 2438 19 ## PPE_04792 hypothetical protein - Term 3063 - 3113 14.4 4 2 Tu 1 . - CDS 3140 - 3553 136 ## - Prom 3609 - 3668 6.4 5 3 Tu 1 . + CDS 3868 - 4467 427 ## PPSC2_c0531 protein + Term 4712 - 4777 1.2 - Term 4653 - 4699 9.4 6 4 Op 1 . - CDS 4757 - 5440 650 ## gi|315644512|ref|ZP_07897644.1| hypothetical protein PVOR_03075 7 4 Op 2 8/0.000 - CDS 5442 - 6311 563 ## COG1131 ABC-type multidrug transport system, ATPase component 8 4 Op 3 . - CDS 6318 - 6704 414 ## COG1725 Predicted transcriptional regulators - Prom 6725 - 6784 5.8 + Prom 6684 - 6743 6.2 9 5 Op 1 36/0.000 + CDS 6962 - 7666 291 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 10 5 Op 2 . + CDS 7669 - 9738 665 ## COG0577 ABC-type antimicrobial peptide transport system, permease component + Term 9793 - 9821 -1.0 - Term 10022 - 10075 13.7 11 6 Tu 1 . - CDS 10145 - 12739 509 ## COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase - Prom 12801 - 12860 9.1 - Term 12883 - 12920 4.0 12 7 Tu 1 . - CDS 13067 - 13462 176 ## COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain 13 8 Tu 1 . - CDS 13613 - 14098 69 ## COG2207 AraC-type DNA-binding domain-containing proteins - Prom 14189 - 14248 2.4 + Prom 14497 - 14556 4.5 14 9 Tu 1 . + CDS 14723 - 15574 194 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase + Term 15593 - 15635 8.2 15 10 Tu 1 . - CDS 15862 - 15924 57 ## - Prom 15976 - 16035 1.6 16 11 Tu 1 . + CDS 16010 - 27850 9440 ## PPSC2_c4893 conserved repeat domain protein + Term 27966 - 27997 -0.8 17 12 Op 1 . - CDS 28482 - 28658 75 ## 18 12 Op 2 . - CDS 28696 - 28884 104 ## 19 12 Op 3 . - CDS 28901 - 29479 328 ## COG0546 Predicted phosphatases - Term 29563 - 29606 -0.0 20 13 Tu 1 . - CDS 29647 - 31023 418 ## COG0613 Predicted metal-dependent phosphoesterases (PHP family) - Term 31049 - 31089 6.2 21 14 Op 1 14/0.000 - CDS 31121 - 32431 675 ## COG1653 ABC-type sugar transport system, periplasmic component 22 14 Op 2 38/0.000 - CDS 32530 - 33372 688 ## COG0395 ABC-type sugar transport system, permease component 23 14 Op 3 . - CDS 33385 - 34269 443 ## COG1175 ABC-type sugar transport systems, permease components - Prom 34322 - 34381 4.4 Predicted protein(s) >gi|333605934|gb|AFDH01000073.1| GENE 1 1 - 859 447 286 aa, chain - ## HITS:1 COG:MJ0256 KEGG:ns NR:ns ## COG: MJ0256 COG0028 # Protein_GI_number: 15669880 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] # Organism: Methanococcus jannaschii # 184 286 3 104 188 86 42.0 6e-17 MGEELKQLGYTFFSGVPCSFLKNLINYAINECDYVAAANEGDAVAIASGAYVGGKKSVVL MQNSGLTNAVSPLTSLNYPFRIPLLGFVSLRGEPGIPDEPQHELMGQITTQMLDLMDVEW QYLSKDLEEAKKQLIQADEHIARNRPFFFVVKKGTFDKVQLRNQQTSIHLNQIRQHAHAD HQMPTRYEALAAINSMKDGNTIQLATTGKTGRELYEIEDADNNLYMVGSMGCIGSLGLGL ALSQPSKDIFVIDGDGSLLMRMGSLATNGYYQPVNMVHILLDNNAH >gi|333605934|gb|AFDH01000073.1| GENE 2 874 - 1809 434 311 aa, chain - ## HITS:1 COG:mlr9115 KEGG:ns NR:ns ## COG: mlr9115 COG2513 # Protein_GI_number: 13488216 # Func_class: G Carbohydrate transport and metabolism # Function: PEP phosphonomutase and related enzymes # Organism: Mesorhizobium loti # 16 310 18 307 318 336 56.0 4e-92 MHVILGGEGEHFNEKTKQLRDLIHSQKPEFIMEAHNGLSAKIVEEAGFKGIWASGLSISA AMGVRDNNEASWTQVLDVLEFMSDATSIPILLDGDTGYGNFNNARRLVKKLEQRHIAGVC IEDKQFPKTNSFINGQEQSLADIEEFSGKIKAMKDTQTDEDFTVVARVEAFITGKGLKVA LQRAEAYRKAGADAVFIHSKRSDVAEIEAFMKEWAGRLPVVIVPTKYYTTPTVRFQEMGI SLVIWANHNLRASIQAMKHLSDRIYRDQSLVHVEKDVATLDEVFRLQGTEELEAAEQQYL PSSEPDSGERA >gi|333605934|gb|AFDH01000073.1| GENE 3 1815 - 2438 19 207 aa, chain - ## HITS:1 COG:no KEGG:PPE_04792 NR:ns ## KEGG: PPE_04792 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 1 207 36 242 242 301 81.0 9e-81 MLRTYSSVFIKPNHGSGGSGIIRVKRLKKRYEVRSASRRKVVRSRFLFKAIQSYRKPGHQ YLVQKGLRLAKYHGSIFDIRIYLQKPKGKWVISGVVARVAAPRKYVTNYLKGGHAVSLNR ALYSLFKHNRTKTNAYFRRISKLSLIIAKTINKRHAVRELGVDIAIDKKGRIWIIEANSR PGHMLFTQLSDRTMINTIRRNKRLIRK >gi|333605934|gb|AFDH01000073.1| GENE 4 3140 - 3553 136 137 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKKQWIVLSALASVLAFGQTALAAENVQGENNNQKTASLIESAAVTEYQVTWNAVSGAAN YKIKIVRVDSGAEIVPVIDLGTDRVFKDVPYLKSNTQYRVWVAAYDSKGKLLAQKVEVKT TAGEIGGIIRWNLGSLS >gi|333605934|gb|AFDH01000073.1| GENE 5 3868 - 4467 427 199 aa, chain + ## HITS:1 COG:no KEGG:PPSC2_c0531 NR:ns ## KEGG: PPSC2_c0531 # Name: not_defined # Def: protein # Organism: P.polymyxa_SC2 # Pathway: not_defined # 1 199 19 216 216 339 88.0 3e-92 MTPAAGSVQAKAEDKADSVCLSSKMVQLKVDMQKVWIDHTIWTRSYIVSAISNRPDQKDV LDRLLRNQQDIGNVIKPYYGEAAGNKLADLLREHILIAGKIVAAAKAGNQADVKKLEADW HRNADDIAKFLSAANPNWPFKTLQDMLYTHLQLITEIVLACLNGDWKADIAATDKNEIHM IHLADILTEGIVKQFPGKF >gi|333605934|gb|AFDH01000073.1| GENE 6 4757 - 5440 650 227 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|315644512|ref|ZP_07897644.1| ## NR: gi|315644512|ref|ZP_07897644.1| hypothetical protein PVOR_03075 [Paenibacillus vortex V453] hypothetical protein PVOR_03075 [Paenibacillus vortex V453] # 1 226 1 227 229 141 40.0 3e-32 MGALAVHLKATYLQMRVCIWGVILLLLLGKLAEFIVGLFIDSSQSRGLSGGNILILILPL IAIVLPLIYYKRILHLGASREHYFKGLLFVFAVYAAAIAFINSLWVVIEWNVLRNYTTPV NLISAFHWNDFGLAGSFLYQTAFYLMAMALLSMLISGYYHPAGWLLWALLITAIPVGTAI PSLRVHVVSFFKALLFNGSLLAGIGFNLILCLVFVAGGWLFTRGRTH >gi|333605934|gb|AFDH01000073.1| GENE 7 5442 - 6311 563 289 aa, chain - ## HITS:1 COG:BH3493 KEGG:ns NR:ns ## COG: BH3493 COG1131 # Protein_GI_number: 15616055 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Bacillus halodurans # 1 253 1 263 283 186 37.0 7e-47 MSIALTCGNLTKKYGQTYALCKLDLQLEENVIYGLLGRNGAGKTTLLNTIAGGISPNCGS IKVRGKKLGKGELPEDFCFVRENSKHFGGGRIIEVLKFAANFHPNWDWPFALELLKTFRL DPDKKIRQLSRGTESLVSNIIGLASRAPLTLFDEPVLGLDVLMREQFYKALLEDCANHPR TILLSTHLMDEIAPVAERVYIMEAGSILLHDEMDRIRMAAHLIRGNSEAVASFTAGKRVL HKETYGHGTLAAIYEKLNDGDRQLAREMNISIEHLTLQTFFSYLIRGGH >gi|333605934|gb|AFDH01000073.1| GENE 8 6318 - 6704 414 128 aa, chain - ## HITS:1 COG:BH3492 KEGG:ns NR:ns ## COG: BH3492 COG1725 # Protein_GI_number: 15616054 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus halodurans # 7 124 1 118 129 112 47.0 2e-25 MLNGEGMNVTFDEKQPIFHQVANIIEDDILNGTFRVDEQILSVAQFSQLFQINPATVVKG IGLLVNEGILYKKRGLGMYVAADAKRNIQIKRRDRFYKELLSNLVNEADKLGLTTEDIMN MIKQLREE >gi|333605934|gb|AFDH01000073.1| GENE 9 6962 - 7666 291 234 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 199 1 200 223 116 36 2e-25 MKKLIEFKNVSKEYKIGEVMIRALDGVDFSIAEGEFVVILGASGAGKSTILNILGGMDTA TSGQVFVGDQEITSLGEKKLTEYRGEKVGFVFQFYNLIPNLNALENVEFATEVCKNYLDA KDILYKVGLQDRIGNFPSQLSGGEQQRVAIARAVAKNPLLLLCDEPTGALDYGTGKSVLK LLQDLNKETKKCVVLVTHNSAIAPMADKIIKVKSGMIESVTINKDKQSVEGIEW >gi|333605934|gb|AFDH01000073.1| GENE 10 7669 - 9738 665 689 aa, chain + ## HITS:1 COG:lin1187 KEGG:ns NR:ns ## COG: lin1187 COG0577 # Protein_GI_number: 16800256 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Listeria innocua # 242 685 592 1046 1136 164 28.0 7e-40 MKLFSKLIRDIRQSLGQFIALILVVAVGAFFYGGLVTYSDTLSSYTKDYFKNHNLSDLNV YYNQISKEEVAGLSKIEGIHKIEGRYTLDAKQVFDKDKASLTIHSIPVNNEINTLTMIEG SIPSKKGEIALDSHYAKEHQFHTGDNIRIHTDGRDFTFTISGLCENAEYAKKNPTQDHKA YGIAYMAEETIPEILDGGFTYNEIMIDAEEGYDMDKIGKSIEAQSRQLAYLNQVSKERTF NYSQITQTIYNNTMMSKVVPLVLFLIEAIIVFLIMSRMIDSQRNQVGIMKALGVKNRSIM LHYMGYPVLVSIIGSILGCAIAAAVFIPLVRASNARAYSLPDITFSLSLLPLIPPIIFSG AFGSLSCYVSGRAVLKERAAQAMRPKAPKKMNKLIIERIPGIWSRIPYSYKLIFRNIGLN KQKALASSTGVVVSTVLLITAFGTQTALQKVVNQTEDVYTYDLRVDYTVGPTPDPSELPS GIKNRYRLATLPVEFIKGDEHENATLVVTEKDNRLLHFFDDKENRISLDEGGVLVPKSYA DKYQIAEGDRIEIKFAAPELKNKSAAMKVLQISTQYSNPSFYITPAYLESFGIDYSPASL LIEAAGSADLASVRHFFEQDPHVDTLTDKSDLKKSAQYILKQNSFVFIMFIICAVLLSFG AIYTITSINIYERNRELATLKVLGYQKIK >gi|333605934|gb|AFDH01000073.1| GENE 11 10145 - 12739 509 864 aa, chain - ## HITS:1 COG:BS_pps KEGG:ns NR:ns ## COG: BS_pps COG0574 # Protein_GI_number: 16078943 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate synthase/pyruvate phosphate dikinase # Organism: Bacillus subtilis # 1 864 1 866 866 1464 83.0 0 MSSLVLGFQEMEKAQLMLVGGKGLNLGELSKMEGIQVPEGFCVTTAGYQKAIEPNETHHA LLNRLTGLKVEDRIQIGEISKKIRQIIMEVEIPSDVVKAVTHYLSRFGDEHAYAVRSSAT AEDLPHASFAGQQDTYLNIIGLDAILRHISKCWASLFTDRAVIYRMQNGFDHSQVYLSVV VQRMVFPQASGILFTADPITSNRKLLSIDAGFGLGEALVSGLVSADCYKVQEEEIVDKRI ATKKLAIYGRKEGGTETRQIDPNQQKTQTLTEQQILELARIGRQIEAYFGQPQDIEWCLA HDTFYVVQSRPITTLYPIPEANDQENHVYVSVGHQQMMTDPIKPLGLSFYLLITPAPMRK AGGRLFVDVAPRLATPVGRETLLNALGSDPLIKGALMTIIERDFIKLLPNDQTAPIPGRS ITDRPAQFENDPTIVSDLIKRSQTSIEELKQNIQTKSGSDLFDFILEDIQELKKILFDPQ SSAVFMAAINATSWINENMNEWLGEKNAADTLSQSVPGNITSEMGLALLHVADVIRPYPE VIDYLQHAKEDNFLDELVKFDGGKETQDSIYDYLSKYGMRCTGEIDITRTRWSEKPLTLV PLILGNIKNFEPNAGKRKFEQGRQEALEKEKELIDRLKQLPDGEQKAKETKRMIDLIRNF IGYREYPKYGYVSRYFVYRQALLKEAERLVQAGVIQDKEDSYYLTFEELHEVVRTNQLDY PIIGKRKDEYKFYEKLTPPRVITSDGEIIAGEYERENLPANAIAGLPVSSGVIEGRARVI LNIENADLEDGDILVTSFTDPGWTPLFVSIKGLVTEVGGLMTHGAVIAREYGLPAVVGVE NATGLIKDGQRIRVNGTEGYIEIL >gi|333605934|gb|AFDH01000073.1| GENE 12 13067 - 13462 176 131 aa, chain - ## HITS:1 COG:SMc01911 KEGG:ns NR:ns ## COG: SMc01911 COG1917 # Protein_GI_number: 15965016 # Func_class: S Function unknown # Function: Uncharacterized conserved protein, contains double-stranded beta-helix domain # Organism: Sinorhizobium meliloti # 1 130 1 130 132 183 71.0 8e-47 MEIRRIGSQPSGKGSSDYFTGTVRIDPLFEAAEPARVAGASVTFEPGARTAWHTHPLGQT LIVTAGRGRVQRWGGKIEEISPGDVVWFPPGEKHWHGASPTTAMTHIAIQERLDGKAVEW MEKVSNDQYQP >gi|333605934|gb|AFDH01000073.1| GENE 13 13613 - 14098 69 161 aa, chain - ## HITS:1 COG:PA2047 KEGG:ns NR:ns ## COG: PA2047 COG2207 # Protein_GI_number: 15597243 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Pseudomonas aeruginosa # 1 160 167 326 329 176 55.0 2e-44 MELPLVDAVIRLARLLDNPKDIPILAPLFTKEILYRVLQGQHGARLEQVAIEGSSARQIK DVIEHITNNYDKSFRIEELAEKVNMSVSSLHRHFNEVTAMSPIQFQKELRLQEARRLLLT ESADATEVAFRVGYESPSQFSREYSRMFGFPPRQDIMRLKA >gi|333605934|gb|AFDH01000073.1| GENE 14 14723 - 15574 194 283 aa, chain + ## HITS:1 COG:TM1009 KEGG:ns NR:ns ## COG: TM1009 COG0656 # Protein_GI_number: 15643767 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Thermotoga maritima # 3 280 5 285 286 390 66.0 1e-108 MQKVTLNNGIEMPILGFGVFQIPDANECEQSVYDAIMAGYRLIDTAASYLNEEAVGRAIK RSGVAREELFITTKLWVQDTGYERTKKAFEKSLERLQFDYLDLYLIHQPYGDVFGSWRAM EELYREGKIRAIGVSNFHEDRLIDLIIHNEVVPAVNQVETHPLNQQIEHAKFMKENKVQI ESWAPFAEGKNNLFQNEVLVSIAEKYNKSAAQVVLRWLTQRDVVVIPKSVRKERIIENFN IFDFELSEEDMESIASLDTKQSLFFSHRDPDIVKWIGTRKLAI >gi|333605934|gb|AFDH01000073.1| GENE 15 15862 - 15924 57 20 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MHTKRTTNKVETPKRVELNE >gi|333605934|gb|AFDH01000073.1| GENE 16 16010 - 27850 9440 3946 aa, chain + ## HITS:1 COG:no KEGG:PPSC2_c4893 NR:ns ## KEGG: PPSC2_c4893 # Name: not_defined # Def: conserved repeat domain protein # Organism: P.polymyxa_SC2 # Pathway: not_defined # 1 3677 1 3679 3691 2469 50.0 0 MAFLQRYAANQTGAITFTGNTLGLSRSETAGVPGTVDSIGAYTTTDTTLQYGTYPAGTTS LYTSNSSAAVLTLPAGSTVLYAELIWGGSYLDGTVNNTAFINNPITFTTPAGTSSVTQDA ATVYNVTFAVSPSSVLAYVRTANVTALVSAGGAGTYTAKSIVGTLAVPDPTANHAGWTLA VVYQNPSLPFRNLSLGVGAEIVQATSGAVNVVISGFATPAQGTLKGRALISAQEGDANKT GDQALFGPTTSSLTALSGANNFAANFFASQLNKDDGTLDTTGTFGTRNAINGAPGTLITG GRQGWDITNVDISTTLKNAQTSAILQLTTSGDGYIVNANAIQIDINAPLVTVTKTASVTG AVIGDTVTFTIAVRNTGLVDASNTVFTDPIPAGSALVPNSVTVNGTARTGTDPSAGILLG TISAGSTTTVTFRVTVTSLPTPAQLSNQATASFSFQSVTGGPVISGSVPSNTLAVPVYQP VIGLVKTANTSTATVGDTVTYTLKATNTGSIRAAATLTDPIPAGSAFVTGSVTVNGTSQP AANPATGFSVGNIDAGGGVVTVTFQTVVTSVPAGGRLTDQGTASYTYSPPDGRTLSGSAV SNTLSIPVSAPNVTVVKTAGSTDAVVGDTVTYTITATNNGITAVTGVVVTDPIPAGSSFV TGSVTVNGTAVPAANPATGVPVASIAAGSSAVVTFRVNVTSVPSPAQLANQATVSFSSGA FTGSSLSNTITLPVYQAVVSAVKSVSPASATVGATLTYTVTVKNSGNLPVSLNVSDPVPA GSTFLAGSVTVNGTSLPAANPAVGFAAGSLAAGASSVITFQTVVTSLPATSRLVDQATVS YTYQPPDGRTLTGSVVSNEVSVPVSAPNVTAVKSVSNTAATVGDVITYTIVAANGSSVPV TSVVITDPIPAGTTFNTGSVTVNGTPVPAANPAVGVPVGAIAAGASTTLQFKVSVTSLPS PATLGNQATVSFTSGVFTGSSVSNTVSVPVYQPVLSAVKSADTAKATVGDSVTYTVSLTN NGNYNASITLTDPIPAGSSFAPNSVTVNGLPLAGADPVTGISVGTVSPGTTSTVTFQTVV NSLPAPPQLSDQAAAAYTYRLPDGRTLTGTVSSNTLTIPVSAPNVSVVKTASVTDAVIGD TVTYTIVVTNNGIEAVSDVVVTDPIPAGSSFVTGSVNVRGAPLLTASPAAGIPVGSIAAG ASAAVTFAVQVNTLPSPPQLSNQASASFTSGAFSGTAVSDLLIVPVYQPVLAAVKSAGAS RVTVGDTVTYTVTATNSGNLAAQLTVTDPIPAGSSFVANSVTVGGVPVPGANPAAGIAAG SAGPGASVTVIFQTVVNTLPAPPVLTDQAQVSYTYRPPDGRSLTGSVSSNSVTLPVSLPN VTIVKSPSAPDAIPGDVVTYTLTVTNSGTGAVSNVVVTDPIPAGSVFVAGSVKVNGTAVP AVNPANGISAGTIAAGASSTIVFSVQVTSLPSPPLLVNQASVSYTSGSFSGSAASNTVSL PVYQPIVTVKKSANLSQGTVGDLVTYSITASNSGNIGVTASITDAIPVGSALVSNSVALN QVPLPGANPAGGVAAGTLAPGASTTLTFQVVITSVPTPPQLVDQAAVSYTYQPPDGRTVS GSASSNTVVIPVSAPNVVISKSASATDAVVGDTIAYTLVAVNNGIENVTNVIVTDSIPDG TTLVPGSVTVNSVPVPGANPSAGVPAGLIVPGGAAAVTFSVLVNSLPASGQLVNRGSVSF TSGTLSFSSLSNTVTVTVYQSILSIAKSANTVNATVGDTITYTLVLANSGNIAASTTVTD LIPAGSVLLDNSVTVNGSPRAGADPSAGIPVGSVAPGVPVTVMFQTVVNSVPASSILLDQ ASASFVFVPPDGRSVTGSAVSNTLVIPVSAPNVTVTLTTASTDAVLGDVVSYTITATNNG IENVTGVLATDSIPAGSVFVPGSVVLNGTPLPSANPSVGVPVGIIAPGASAVLSFQTSVT SLPSPPVLSNKAIVSFTSGAFTGSSTSGTVLVPVYQPILAAVKTANFSNATVGDTIAYTI AVTNSGNIAASLVVTDPIPPGSTFLTNSVLVNGLPLPGADPTTGIAAGSLLPGATTLVSF ETVVVSVPPSSRLNDQAAVAFTFQPPDGRTISESVSSNPVTIPVSAPNVTVTKTAGSTDA VVGDTIAYTITATNSGIENVTNVVISDPIPVGSVLVPGSVTLNGLPVPAGNPAAGIPAGI IAPGASAVLRFQVTVTSLPSPAQLLDQATVSFTSGAFTGSSVSEPLSIPVYQPILTLAKS GNSTNATVGDTITYSILVTNSGNIDAAATITDPIPAGSAFFVNSVAVNGTSYPGSDPSTG IAVGSIAPGSSTLVTFQVIVTSVPVPPSLVNQASASFTFVPPDGRIIRESAVSNVVSIPV SAPDIAVTKTVGSTDAAVGDTITYTITASNAGISGVTNVVVTDPIPTGSALVPGSVTLNG IVQPGANPAAGIAVGSVAPGAVATVSFQVTVTSLPSPPVLSNQARVSYTSGAFSGSSLSD PVVIGVYQPILSVTKSANTANATVGDTIVYTILATNSGDIAAVTTISDPIPAGSAFIANS VTVNGQPIPGADPTVGIAVGPIPPAGTAGVTFQVVVTSVPSPPTLVDQATAAFTFQPPDG RTLSGTALSNAVSIPVSAPNVTVAKSASAADAVFGDTVTYTITAANNGIEAVTGVIVTDP IPAGSAFVPGSVTLGGTPLPLAQPDAGINAGTIAAGATATVTFQVTVTSLPSPPVLSNQA AVSFTSGVFSGTSYSDPVTVPIYQPILQLVKSANFSNVTVGDTLTYTIQTTNSGNIAAAL IVSDPIPAGSQFIENSVSVNGIPVPGASPAAGINAGSVLPGSTASVMFQVLVTSVPNPQQ LTDQASAAFTFLPPDGRTVNGSAVSNTLSIPVSAPNVSVVKGTTAADAIFGDIVTYSIAV TNNGIAAVTNTVVTDPIPAGSAFVPGSVTVGGTARPGTSPVTGIPVGTLAAGSTTVVTFQ VTVQSLPTPPQLYNQASVAFTSGAFTFSSVSNPVVVPIFQPILTVAKSGSSDNATVGDTV TYTIVLTNTGNLAASASVTDPIPPGSSFVPNSVTLNGIPLPGTDPVTGIPTGSIAPGGSA AVTFQVLVTAVPAPPLLIDQASAQFTFVSPDGRTNTGSGASNTVIVSVSNVPVTAVKETD LRSSILGDTIRYTITVTNKDADLIREVVLTDPLPQGSAFVKGSVTVDGIVQPAADPNTGI PVGQLASGASVSVSFQASVVSLPSPPELTNQAVVSFVSGAEAESIVSNSVTIPVLQPVLT VQKTGGADSVAAGDTVLYTITAANTGSTGAFTTITDLLPPETVLVPDSVAVNGTVIPGAD PATGITVGTIAPGASASVSFRVQVTVIPPEGILVNQALSAYSFQTPDGRTHEGSSASEPV VIPVTPHSVSLLKNSTVEAAAIGDVLAFGITVTNGGQAPAADMIVTDLLPEGTSFVPGSV TVDGTALPDARPQAGITLGAVPPQSTVLIGFQLEITSVPASTQLVNTASASFTYAGNSYT VSASSDAVFVYEYAIEAVKSSVQTIATIGSEIAYNVLVTNTGTIAVSSLVLTDRLPAGTQ LDAGSIRIDEQLQPGANLSTGLSLPSLGPGGSASISYSVTVTEQPDSGQIENQARIESSY ILPDGKTYSDVVASNLIGINVQSPVIIAEKSASPGIRVLGDVVEYTVAIRNSGTLAADVI LQDLLPSGSAYLPDSVTVNGEPRPGADPSDLAIGLLAPGTAVTAAFRLTITSLPAEGLLR NRATATFTYQLPDETAIYTGAAASNEVVLPVFAPAASIDLNVDSHEAAPGDVLTYTAVIT NTSRAPIVEIFTQNDLPAGLAFVPGSVRINGMAAPNADITAGIPLGELQEGASITVQFAV AVLPATYGLISLRLPVGFSVRLPDGRLISGSQQSNPVTVRIVQHEE >gi|333605934|gb|AFDH01000073.1| GENE 17 28482 - 28658 75 58 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKSIAPHNSISKRGDPIKNSTMFQAKLQPLLLKEEVESVVEWIGCQDKARTFSVYTLL >gi|333605934|gb|AFDH01000073.1| GENE 18 28696 - 28884 104 62 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKGWLLLLLAIILELSGTISMKYSAGFSKWNPSILIFVFYAASFTSLNYAIKTIDARLLI DQ >gi|333605934|gb|AFDH01000073.1| GENE 19 28901 - 29479 328 192 aa, chain - ## HITS:1 COG:all0135 KEGG:ns NR:ns ## COG: all0135 COG0546 # Protein_GI_number: 17227631 # Func_class: R General function prediction only # Function: Predicted phosphatases # Organism: Nostoc sp. PCC 7120 # 11 164 66 217 244 73 30.0 3e-13 MCRDGEKFHYDPLGPLAMGSNREIAAVIAGHLYLSGLAWNEAITAVLTDMKHVSTQIDEL RPVRAMPGVFSFVQQLSREGVPIGIVTSDDTEAAVKHLEWLGMRTHFQVILGSDGHVNGK PHPDLAIAACAKLQIAPERTLMFGDTKADIQMAREAKLAGIVRIGLERTQASDGEEEQIS HYEQLQWTSLTS >gi|333605934|gb|AFDH01000073.1| GENE 20 29647 - 31023 418 458 aa, chain - ## HITS:1 COG:AF0505 KEGG:ns NR:ns ## COG: AF0505 COG0613 # Protein_GI_number: 11498116 # Func_class: R General function prediction only # Function: Predicted metal-dependent phosphoesterases (PHP family) # Organism: Archaeoglobus fulgidus # 125 295 3 159 208 65 30.0 3e-10 MDWISLVITYEKLDWIQIFVKDPDGFIRMQYTGKKRAERILLGRLQENCSIGSVPGDVGA GTWKADVIAYARDEDSMFKLEWMHGKDVSAESSTVPIAIGTPWVTLDGDDRYKQERPNCG ARWYKGDFHMHTSLSDGKQSPEQLMESSLRQQLNFIVVTEHNHRHTTWPSHDRLLALPGM EVTAFQGHWNVLGITDWLPLYDEDGTLTMEDAEGMNRIIAAAREQGAVCSLNHPYLAPWD WRFGRTELSLFHAIEIWNDPTYEGNAEAAERALMLWDACWARGLRLAGIGGSDTHLLPHE SYMEGGPPSMAGDPATYVYCDELSEVQLLDAVKKGRCIVTRGPQLEPCIYSGGRQILPGD QVSMDAQAAVPIRYSIAIKGIKEKGKLIWLLNGLPVFEAIVNEDGPYVYETEWTGEAYRW LRVEHRSEYGTLLAFINPIYANPIGCASLTWEEVNAEL >gi|333605934|gb|AFDH01000073.1| GENE 21 31121 - 32431 675 436 aa, chain - ## HITS:1 COG:BH1079 KEGG:ns NR:ns ## COG: BH1079 COG1653 # Protein_GI_number: 15613642 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Bacillus halodurans # 1 382 9 399 459 94 23.0 5e-19 MVAIVIMFLAACENGNTGKNANNGDVKPVNAEAAAKKPVEIEFWYALGGKLGQNVEALIK EFNAAQDGVIVKGVAQGNYEETQQKLQAAIASKKVPAAVLTQNNDWARKGYFAALDDYIA ADVDFNKDDFIPAFLQQGVVNDKQFFLPMYGTTQVLYYRKDMLEKAGLTEDVFNTWETLA DAAAKMTVKKGGTTKVFGWMPMWGRENMMDAALSRGGRILSEDGKTVMIDSAEWIETWEQ FRKWFHEEQIMGIHSGGQGWEYWYKTIDDVMQGRAAGYTGSSGDQGDLDFNVVAAHTQPG WANRAPAPMARALMAGIPALASDKQKQAAYEWLTFFSNTKNTAKWSINTGYISVRSSALE DPDYKAFSEQNPQIKVPLMQAQSASSAFIDQTGGKIDDALKIAADKVQIENVPAADALKE AQQKAQAELDKVTGVK >gi|333605934|gb|AFDH01000073.1| GENE 22 32530 - 33372 688 280 aa, chain - ## HITS:1 COG:lin0219 KEGG:ns NR:ns ## COG: lin0219 COG0395 # Protein_GI_number: 16799296 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Listeria innocua # 6 274 13 278 282 159 34.0 4e-39 MRAGSMIVRSLHHVILAAFSFIMAFPFIWMITSAFKTNDEIWAYPPVLLPDKLLWENISK AWHAAPFDLYVFNSVFVSVCIVLIQTVNSAMMAYALVHMRFPLGRPLLAIILVSYMLPGA ATYLPGYIILSNLGLIDTYRGLIISNSVSVFTIFMIYQAFRQIPKEVVEAAKIDGAPHRR ILWTMVIPLTAPYFVVMGLITFIEMYNNYLWPSLITHNPDLYLVSAGLRSFFIEGGAYGM NWAQVMAASSFTILPLLILFIFAQKFIMKGVSQSYSVNKG >gi|333605934|gb|AFDH01000073.1| GENE 23 33385 - 34269 443 294 aa, chain - ## HITS:1 COG:AGpA78 KEGG:ns NR:ns ## COG: AGpA78 COG1175 # Protein_GI_number: 16119287 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 13 292 42 321 323 190 35.0 2e-48 MKKFKRWGEPAAYFYVLPAMVPLTLFWLAPMVYIVYLSFTDWDFMSPVKTWVGFENYKEL FTNEEFYKALKVTLLFGIGMVVPTMAGGLVLALILSRQGRGSGVYRAILFSPWVTPTVAV SIVWSWIFETRSGLANSILIGLGADGLPWLQSSKWALFCVIIVSVWKYVGWAMVFYLVAL QGVPKDLREAAFMDGAGGWSIFKSVTLPLISPTSFFLFIILWLQSFQAYDQISILTQGGP SGSTRTLLYMYYQSAFDSFNVGEASAVALVLVFISALFSLVSVTMSRRSVHYLQ Prediction of potential genes in microbial genomes Time: Sun Jul 17 09:26:22 2011 Seq name: gi|333605868|gb|AFDH01000074.1| Paenibacillus sp. HGF7 contig00105, whole genome shotgun sequence Length of sequence - 66492 bp Number of predicted genes - 59, with homology - 51 Number of transcription units - 34, operones - 15 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 11 - 220 119 ## + Term 422 - 450 -0.3 - Term 85 - 109 -0.3 2 2 Tu 1 . - CDS 265 - 1200 970 ## COG1234 Metal-dependent hydrolases of the beta-lactamase superfamily III - Prom 1241 - 1300 4.3 - Term 1343 - 1377 3.1 3 3 Tu 1 . - CDS 1456 - 4899 3968 ## COG1410 Methionine synthase I, cobalamin-binding domain - Prom 4969 - 5028 5.6 + Prom 4921 - 4980 2.3 4 4 Tu 1 . + CDS 5152 - 5574 417 ## COG2010 Cytochrome c, mono- and diheme variants + Term 5648 - 5691 9.6 + Prom 5666 - 5725 6.0 5 5 Op 1 . + CDS 5771 - 6556 919 ## Pjdr2_2941 hypothetical protein 6 5 Op 2 . + CDS 6576 - 8297 2053 ## COG2303 Choline dehydrogenase and related flavoproteins 7 5 Op 3 28/0.000 + CDS 8337 - 9068 934 ## COG0805 Sec-independent protein secretion pathway component TatC 8 5 Op 4 . + CDS 9113 - 9307 353 ## COG1826 Sec-independent protein secretion pathway components + Term 9428 - 9467 8.2 + Prom 9476 - 9535 7.0 9 6 Tu 1 . + CDS 9593 - 10135 701 ## COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain + Term 10190 - 10231 13.4 - Term 10178 - 10219 13.4 10 7 Op 1 . - CDS 10228 - 11040 759 ## COG1011 Predicted hydrolase (HAD superfamily) 11 7 Op 2 . - CDS 11079 - 11261 196 ## - Prom 11290 - 11349 5.0 - Term 11347 - 11400 8.4 12 8 Tu 1 . - CDS 11484 - 12017 278 ## gi|167465659|ref|ZP_02330748.1| LexA repressor - Prom 12043 - 12102 5.0 + Prom 12076 - 12135 6.8 13 9 Tu 1 . + CDS 12162 - 12773 698 ## COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases) + Term 12819 - 12860 11.3 - Term 12807 - 12848 11.3 14 10 Op 1 5/0.000 - CDS 12923 - 14257 1277 ## COG0174 Glutamine synthetase 15 10 Op 2 3/0.000 - CDS 14287 - 14700 482 ## COG0789 Predicted transcriptional regulators - Prom 14729 - 14788 7.1 - Term 14788 - 14835 7.1 16 11 Op 1 4/0.000 - CDS 14894 - 16144 1368 ## COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance 17 11 Op 2 . - CDS 16164 - 17483 625 ## PROTEIN SUPPORTED gi|149914878|ref|ZP_01903407.1| 30S ribosomal protein S2 - Prom 17665 - 17724 4.7 18 12 Op 1 . - CDS 17836 - 18072 211 ## GYMC10_2357 AAA ATPase central domain protein 19 12 Op 2 . - CDS 18096 - 18800 478 ## COG0464 ATPases of the AAA+ class - Prom 18871 - 18930 2.1 + Prom 18906 - 18965 4.4 20 13 Tu 1 . + CDS 18998 - 19711 265 ## + Term 19814 - 19845 2.4 - Term 19798 - 19837 6.7 21 14 Op 1 . - CDS 19874 - 20788 561 ## 22 14 Op 2 . - CDS 20788 - 21810 1184 ## COG0095 Lipoate-protein ligase A - Prom 21870 - 21929 3.2 + Prom 21866 - 21925 7.1 23 15 Op 1 2/0.000 + CDS 22009 - 22782 587 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 24 15 Op 2 . + CDS 22828 - 23697 226 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 + Term 23729 - 23766 5.4 + Prom 23747 - 23806 4.1 25 16 Tu 1 . + CDS 23915 - 24136 336 ## 26 17 Tu 1 . - CDS 24281 - 24637 307 ## Pjdr2_2218 hypothetical protein - Prom 24697 - 24756 4.8 - Term 24712 - 24750 7.0 27 18 Tu 1 . - CDS 24766 - 27318 2516 ## COG0744 Membrane carboxypeptidase (penicillin-binding protein) - Prom 27397 - 27456 3.3 - Term 27380 - 27418 7.2 28 19 Op 1 15/0.000 - CDS 27471 - 27716 321 ## COG1923 Uncharacterized host factor I protein 29 19 Op 2 2/0.000 - CDS 27773 - 28747 783 ## COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase 30 19 Op 3 1/0.000 - CDS 28741 - 29514 518 ## COG0500 SAM-dependent methyltransferases - Prom 29583 - 29642 2.1 31 19 Op 4 . - CDS 29716 - 32082 1900 ## COG0323 DNA mismatch repair enzyme (predicted ATPase) 32 19 Op 5 . - CDS 32089 - 33528 1479 ## COG0793 Periplasmic protease 33 20 Op 1 . - CDS 33660 - 36365 2759 ## COG0249 Mismatch repair ATPase (MutS family) 34 20 Op 2 . - CDS 36436 - 37944 1181 ## PPSC2_c2990 protein - Term 37974 - 38022 3.1 35 21 Tu 1 . - CDS 38046 - 38609 533 ## PPE_02612 spore coat protein E - Prom 38731 - 38790 2.7 + Prom 39321 - 39380 3.0 36 22 Tu 1 . + CDS 39464 - 40183 188 ## Pjdr2_3559 collagen triple helix repeat protein + Term 40255 - 40292 3.1 - Term 40195 - 40231 6.0 37 23 Tu 1 . - CDS 40254 - 41240 1082 ## COG4129 Predicted membrane protein - Prom 41271 - 41330 3.5 38 24 Op 1 24/0.000 - CDS 41349 - 42233 1090 ## COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component 39 24 Op 2 17/0.000 - CDS 42230 - 43021 754 ## COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component - Term 43062 - 43106 -0.6 40 24 Op 3 . - CDS 43107 - 44114 998 ## COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components - Term 44193 - 44250 11.1 41 25 Tu 1 . - CDS 44269 - 45789 1840 ## COG2317 Zn-dependent carboxypeptidase - Prom 45818 - 45877 5.2 + Prom 45769 - 45828 4.1 42 26 Op 1 . + CDS 45900 - 46223 494 ## COG4918 Uncharacterized protein conserved in bacteria + Term 46229 - 46258 1.2 43 26 Op 2 . + CDS 46290 - 46892 691 ## COG0288 Carbonic anhydrase + Term 46941 - 46998 0.3 - Term 46925 - 46950 -0.5 44 27 Tu 1 . - CDS 47035 - 48231 1428 ## COG0738 Fucose permease - Prom 48401 - 48460 7.1 - Term 48434 - 48463 1.1 45 28 Op 1 . - CDS 48490 - 50769 2406 ## 46 28 Op 2 36/0.000 - CDS 50802 - 51980 447 ## PROTEIN SUPPORTED gi|163788031|ref|ZP_02182477.1| 50S ribosomal protein L9 47 28 Op 3 24/0.000 - CDS 51977 - 52687 338 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 48 28 Op 4 . - CDS 52715 - 54424 1831 ## COG0845 Membrane-fusion protein 49 28 Op 5 . - CDS 54428 - 55114 222 ## - Prom 55214 - 55273 3.4 - Term 55126 - 55157 4.1 50 29 Op 1 40/0.000 - CDS 55277 - 56755 1419 ## COG0642 Signal transduction histidine kinase 51 29 Op 2 . - CDS 56793 - 57521 809 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 52 29 Op 3 . - CDS 57518 - 58060 490 ## COG1547 Uncharacterized conserved protein - Prom 58105 - 58164 3.7 + Prom 58166 - 58225 5.0 53 30 Tu 1 . + CDS 58294 - 58455 190 ## BC2612 hypothetical protein + Term 58464 - 58510 4.1 + Prom 58485 - 58544 7.8 54 31 Op 1 . + CDS 58693 - 59100 440 ## BBR47_56950 hypothetical protein 55 31 Op 2 . + CDS 59097 - 59372 376 ## PPE_02623 hypothetical protein + Term 59384 - 59436 12.1 + Prom 59380 - 59439 4.0 56 32 Tu 1 . + CDS 59505 - 61406 1978 ## COG3858 Predicted glycosyl hydrolase + Term 61412 - 61445 6.1 57 33 Tu 1 . - CDS 62350 - 62520 72 ## - Prom 62749 - 62808 6.0 58 34 Op 1 . - CDS 63937 - 64878 116 ## STAUR_2577 hypothetical protein - Term 64901 - 64938 2.3 59 34 Op 2 . - CDS 64948 - 65658 113 ## Cpin_3509 hypothetical protein - Prom 65856 - 65915 3.0 Predicted protein(s) >gi|333605868|gb|AFDH01000074.1| GENE 1 11 - 220 119 69 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MRLCIVGIRPSAISAYRCRKFPLTPDDRQGVSPASVGRSGLQRADSAVIAAEPPLPLAET FTVSRGSAQ >gi|333605868|gb|AFDH01000074.1| GENE 2 265 - 1200 970 311 aa, chain - ## HITS:1 COG:BS_yqjK KEGG:ns NR:ns ## COG: BS_yqjK COG1234 # Protein_GI_number: 16079441 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily III # Organism: Bacillus subtilis # 1 308 1 306 307 340 55.0 2e-93 MELYFLGTGAGMPARHRNVTSIVLNLLPERGSIWFFDCGEGTQHQILRSPVKLSKSEKLF VTHLHGDHIFGLPGLLSSRSYQGGDTPFTIYGPKGIKAYVDMSLQLSQVHLDYELVIREI PSEGGVVFEDETFRVEAAPLEHRIECFGYRIVEKDLPGKLQQEKLHELGITAGPLYGRLK KGQTVKLEDGRELRGSDFVGPSIKGRTIAILGDTKPCGNSALLAEGADVLVHEATFGAER EDLAAAYDHSTTEQAARTAAEVGVGALIMTHISSRYQGEGAERLLEEARAIHPDSWLAED FYNHAVPRKQS >gi|333605868|gb|AFDH01000074.1| GENE 3 1456 - 4899 3968 1147 aa, chain - ## HITS:1 COG:BH1630_2 KEGG:ns NR:ns ## COG: BH1630_2 COG1410 # Protein_GI_number: 15614193 # Func_class: E Amino acid transport and metabolism # Function: Methionine synthase I, cobalamin-binding domain # Organism: Bacillus halodurans # 307 1144 3 840 841 1112 67.0 0 MKPSLKEQLQKKILILDGAMGTMIQQEDLSAEDFGGEELDGCNEMLVLTRPDVIQRIHEK YFEAGSDIVETNTFGATSVVLAEYDIPEKAREINLVAAKLAVEAARKYSTPEWPRYVAGA LGPTTKTLSVTGGVTFEDLEESYYEQTIALIESGVDAILLETSQDTLNVKAGGIAIQRAF KTTGIELPIMISGTIEPMGTTLAGQNIESFYISLEHLNPISVGLNCATGPEFMRDHIRTL SGLAGTYISCYPNAGLPDENGHYHESPESLAKKMAAFAEQGWLNIAGGCCGTTPAHIRAL AETLSAYKPRTELGTHPSAVSGIETVYIEPENRPYMVGERTNVLGSRKFKRLIAEGKYEE ASEIARAQVKGGAHVIDVCLQDPDRDETEDMIKFLELVVKKIKVPLMIDSTDTRVIELGL KHSQGKAIINSINLEDGEEKFEKVLPLIHRYGAAAVVGTIDERGQAITREDKLEVAQRSH DLLVHKYGMNAEDIIFDPLVFPVGTGDQQYIGSAKETIEGIRLIKEAMPATKTILGLSNV SFGLPEAGREVLNAVYLYHCTKAGLDYAIVNTEKLERYASIPEEERTLAEKLIYETNDET LAEFVAHFRVKKVEKKEKISTLTLEERLASYVVEGTKEGLLPDLEQALQKYSPLEVINGP LMEGMAEVGRLFNNNELIVAEVLQSAEVMKASVAYLEQFMEKNESAVKGKIILATVKGDV HDIGKNLVEIILSNNGYQIVNLGIKVPPEQLIEAFRKEKPDAIGLSGLLVKSAQQMIITA QDLRNAGIDVPIMVGGAALTRKFTKTRISPEYDGLVLYAKDAMDGLDIANKLSDPVQRER LIQELRESKDSDVMEAGRKEGTEMPVLTRVFSSTVDRTLPVAVPPDLDRHVLRDYPIGHL MPYVNMQMLLGHHLGLKGKVDKLIAEQDPKAMQLKDTVDTILYEAQKNGIIRTQGMYRFF PAQGDGNDVVVYDPADTSKVLKRFTFPRQGTEPFLCLADYLKPVDSGVMDYIGFLVVTAG QGVSELAREWREQGDYLRSHALQSTALEVAEAFAERVHHIMRDVWGIPDFAEMTMQERFG AKYTGQRFSFGYPACPNLEDQEPLFELMKPEDIGIELTEGCMMEPEASVSAIVFAHPQAR YFNVDKV >gi|333605868|gb|AFDH01000074.1| GENE 4 5152 - 5574 417 140 aa, chain + ## HITS:1 COG:BS_cccB KEGG:ns NR:ns ## COG: BS_cccB COG2010 # Protein_GI_number: 16080580 # Func_class: C Energy production and conversion # Function: Cytochrome c, mono- and diheme variants # Organism: Bacillus subtilis # 51 140 19 112 112 67 40.0 5e-12 MNKRMTVLVGILLVTASLAACGQKQTAPTPQPTTPASTAPPAASPTASPGAAAGGNAPEG AGSGSQTAQAESLYKAQCIACHGVDMGGGVGPNLQKAGSRLSEADVKNILLNGRGGMPAF KGNLSDTDIQALAAWLAAKK >gi|333605868|gb|AFDH01000074.1| GENE 5 5771 - 6556 919 261 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_2941 NR:ns ## KEGG: Pjdr2_2941 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: Pentose phosphate pathway [PATH:pjd00030]; Metabolic pathways [PATH:pjd01100]; Microbial metabolism in diverse environments [PATH:pjd01120] # 4 257 3 253 257 267 58.0 4e-70 MSENQQTKQPRDESRRKFLKLSGVALGGIVAGGVVGGIVGNSMAKNKQAAPGTPQGQGQA QTGNTKDYNQAPMFFNQEQLRITEAATERIFPKDELGPGAKELGVAYYIDHQLAGQWGMN ARDYMMGPFYKAEATQGYQASYKRHELFVMGLTVMNDHSRQKYQKGFADLAENEQDEVLK AFESGKDVQLNGVPSQTFFEMLRSLTIEGAYADPLYGGNKNMAGWRMRKYPGDQMSYTAI IDKKEFAVMEPLSLHDHTNHS >gi|333605868|gb|AFDH01000074.1| GENE 6 6576 - 8297 2053 573 aa, chain + ## HITS:1 COG:Cj0415 KEGG:ns NR:ns ## COG: Cj0415 COG2303 # Protein_GI_number: 15791782 # Func_class: E Amino acid transport and metabolism # Function: Choline dehydrogenase and related flavoproteins # Organism: Campylobacter jejuni # 1 572 1 572 573 627 54.0 1e-179 MATKLPKVPILIVGMGWSGGILAAELTKAGHKVVALERGKSRKTEDYYMAHDELRYSQRY ELMQDLSKETVTFRSSEKVRALPMRSYGSFLMGDGVGGAGVHWNGQNYRFLPYDFEIRSK TIERYGKNKIPQGMMLQDWGITYDQLEPYFDKYEKMAGISGEKEQNEMVGKRSAAFPTGP MKKTPGMVLFEDAAKKLGYHPYAIPSANLSENYTNPDGIARAACQYCAFCERYGCEYGAK ADPVVTVIPVAEKTGNLEIRTNSNVIKLLHTGGKVTGVVYVNTPTGEEFEQPADLVILAS YVFNNVRLLLTSNLGKPYDPKSGTGVIGKNYAYQITGGGAAGFYDDQEFNIFAGAGALGS CFDDFNGDNFDHSSLNFLHGANIRFTQAGLRPIAHNPAPQGTPRWGKDFKQTTIKYANRF LNVSTQGANMPWQHHYLDLDPTYKDIYGLPLLRLTYDFEDQDKEMVKYLAEKTTAVMKEM KPTKVETSNTISTYNIVPYQSTHNTGGVIMGADPSTSAVNSYMQMWDVENLFVVGASAFP HNSGYNPTGTLGALAYRAAEGILTYLKKSGPLV >gi|333605868|gb|AFDH01000074.1| GENE 7 8337 - 9068 934 243 aa, chain + ## HITS:1 COG:BH0553 KEGG:ns NR:ns ## COG: BH0553 COG0805 # Protein_GI_number: 15613116 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Sec-independent protein secretion pathway component TatC # Organism: Bacillus halodurans # 2 236 3 237 253 184 40.0 1e-46 MDRPSEIIGHLEELRKRLILVAAWFLLALIGGLYVSPAILNAVKDSPAALSFHWNVFALP DGLAIYMKCAVLFAVLLTLPLLLYQLWAFVRPGLSEQEAKGTLIYVPASFALFLSGAAFG YTVVLPMMIRFMQTINRSIGAAETYGIDRFFGLVFNVVFPLGIAFELPLLVLFLTRLGLL TPENLRKTRKYTYIGLAIVGASISPPDFFSHIAVTIPLIALFECSILLSARYVRRMNLSA GTS >gi|333605868|gb|AFDH01000074.1| GENE 8 9113 - 9307 353 64 aa, chain + ## HITS:1 COG:lin0381 KEGG:ns NR:ns ## COG: lin0381 COG1826 # Protein_GI_number: 16799458 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Sec-independent protein secretion pathway components # Organism: Listeria innocua # 5 59 2 56 59 58 50.0 4e-09 MLNNIGISGLLIILMLALILFGPSKLPQLGRAFGDTLREFRTSTKEMVDDVEKSIETTDR DKQS >gi|333605868|gb|AFDH01000074.1| GENE 9 9593 - 10135 701 180 aa, chain + ## HITS:1 COG:BS_ykrZ KEGG:ns NR:ns ## COG: BS_ykrZ COG1791 # Protein_GI_number: 16078426 # Func_class: S Function unknown # Function: Uncharacterized conserved protein, contains double-stranded beta-helix domain # Organism: Bacillus subtilis # 1 168 1 168 178 169 51.0 2e-42 MAEIHIRNTGERISGEENVRAFLDRQEVLYEHWNPTKLPADIQEKFILSDEEKAQILSTY DEEIRDLAKRRGYQTWDIIALSDATPNLDELLKKFEQVHTHTEDEVRAITAGKGIFIIKG SDDVGYFNVELEAGDVISVPEHKPHFFTLMDNRQIVAVRLFIETEGWIAHPFEDPTFQKA >gi|333605868|gb|AFDH01000074.1| GENE 10 10228 - 11040 759 270 aa, chain - ## HITS:1 COG:BS_ysaA KEGG:ns NR:ns ## COG: BS_ysaA COG1011 # Protein_GI_number: 16079946 # Func_class: R General function prediction only # Function: Predicted hydrolase (HAD superfamily) # Organism: Bacillus subtilis # 3 261 1 259 260 311 57.0 8e-85 MTVKAILFDLDDTLLWDDRSVKEAFQATCEEAARHADVNPAELEASVRKEARALYEAYET FPFTQHIGINPFEGLWANFTEGKQEEFRKLQALAPGYRKEAWTRGLAALGVNDPELGARL AEQFPAERRSRPIVYEETFEVLAELKKSYKLLLLTNGSPDLQREKLAGVPELAPYFDHIV ISGDFGDGKPAVTIFNHAMELLGLQAGECVMVGDKLTTDILGSFRCGMKNMWINRHGMLF NGEAKPTFEITSLRDIRGILEAEREVQISG >gi|333605868|gb|AFDH01000074.1| GENE 11 11079 - 11261 196 60 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSDSFQLKVQRINELARKAKSVGLSEAELEERNELRKEYIAAMKTQLRGQLDSIHYTDEQ >gi|333605868|gb|AFDH01000074.1| GENE 12 11484 - 12017 278 177 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|167465659|ref|ZP_02330748.1| ## NR: gi|167465659|ref|ZP_02330748.1| LexA repressor [Paenibacillus larvae subsp. larvae BRL-230010] # 37 177 7 122 125 64 33.0 2e-09 MNAYFANPELSLHTRSGDQPATDKASPHPTAVNKSNDHRENSSRFTSRVSDFKDEQGALK AGERTNVRYVKNSNRNIVRTAVIAIVLLIAFSCGIMVQAFASGENSQADGERQATAFNKQ ESAEPSVIVQRGDTLWSIAATQAPEGSDVRAYIYKLRKVNQLSAGDVLKAGDVIKLP >gi|333605868|gb|AFDH01000074.1| GENE 13 12162 - 12773 698 203 aa, chain + ## HITS:1 COG:BH2356 KEGG:ns NR:ns ## COG: BH2356 COG1974 # Protein_GI_number: 15614919 # Func_class: K Transcription; T Signal transduction mechanisms # Function: SOS-response transcriptional repressors (RecA-mediated autopeptidases) # Organism: Bacillus halodurans # 1 203 1 207 207 283 68.0 1e-76 MGKVSQRQLAILEFIKNEVKDKGYPPSVREIGEAVGLASSSTVHGHLERLEKKGLIRRDP TKPRAIEITDGDSDFALSIAQVPLIGKVTAGMPITATENIEDYFPLPMHLVSDYNVFMLN VVGESMIEAGIHNGDMVIVRQQQTANNGDIVVAMTDEDEATVKRFYKERDHIRLQPENST MDPILLNNVTILGKVIGLFRNIH >gi|333605868|gb|AFDH01000074.1| GENE 14 12923 - 14257 1277 444 aa, chain - ## HITS:1 COG:BS_glnA KEGG:ns NR:ns ## COG: BS_glnA COG0174 # Protein_GI_number: 16078809 # Func_class: E Amino acid transport and metabolism # Function: Glutamine synthetase # Organism: Bacillus subtilis # 5 444 4 444 444 714 76.0 0 MTVSYTKEDILRIAKEENVRFIRLQFTDLLGTIKNVEIPVSQLQKALDNKMMFDGSSIEG YVRIEESDMYLYPDLNTWVIFPWVTESKVARLICDVYLPDGTPFPGDPRGILKRALKEAE EMGYTSMNVGPEPEFFLFKTDEKGNPTLELNDQGGYFDLAPTDLGENCRREIVLKLEEMG FEIEASHHEVAPGQHEIDFKYADAIKASDQIQTFKLVVKTIARQHGLHATFMPKPLFGVN GSGMHCNQSLFKGEENAFVDEKDPLGLSADARHFMAGVLQHARAFAAITNPTVNSYKRLV PGYEAPCYVAWSASNRSPMIRIPASRGLSTRVEVRNPDPAANPYLALAVLLRAGLDGIKK KTQLPPPTDRNIYVMTEEERIEQGIPSLPGNLREALDELLKSEVISDALGEHALAHFVEL KEIEYDMYRTQVHAWEREQYMTLY >gi|333605868|gb|AFDH01000074.1| GENE 15 14287 - 14700 482 137 aa, chain - ## HITS:1 COG:BS_glnR KEGG:ns NR:ns ## COG: BS_glnR COG0789 # Protein_GI_number: 16078808 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus subtilis # 1 135 1 134 135 130 52.0 5e-31 MSDDIRRNMALFPIGIVMKLTDLTARQIRYYEQHELVIPARTSGNQRLYSFNDVERLLEI KDLIEKGVNIAGIKQVLLPISKDSEEATVITEQTEVKRKELTDTQLHKMLKQQLLGGGKR PGQVSLIQGELSRFFPK >gi|333605868|gb|AFDH01000074.1| GENE 16 14894 - 16144 1368 416 aa, chain - ## HITS:1 COG:BS_ynbB KEGG:ns NR:ns ## COG: BS_ynbB COG4100 # Protein_GI_number: 16078807 # Func_class: P Inorganic ion transport and metabolism # Function: Cystathionine beta-lyase family protein involved in aluminum resistance # Organism: Bacillus subtilis # 1 416 16 421 421 481 56.0 1e-136 MQFDSDIMAIMEQAEEGVQPRFREIERTIDHNQWKVIAAFQNQGISDYHFASSTGYGYND RGRELLDLVYAEVFGAEAALVRPHFVSGTHTIGTALFGVLRPGDELLYITGKPYDTLHKV IGKPGDGTGSLQDFGIGYREVPLLADGSLDEAGIRAAITPKTKVIGIQRSRGYDWRASFT VAAIGEMVELVKSIRSDLIVFVDNCYGEFTERLEPNQVGADLIAGSLIKNPGGGLAASGG YIAGRKELVEMAAYRLTAPGIGGEVGAMLGTTRSLYQGLFLAPHLVGQAVKGSVVAAAVF ERLGFKTRPRPEDPRTDLIQAIEFTSAEHLITFVQGVQRASAVDAHVTPEPWDMPGYEHP VIMAAGTFIQGGSLELSADAPIREPYIAYMQGGLTYSHCKLGVLTALQHMKERGLL >gi|333605868|gb|AFDH01000074.1| GENE 17 16164 - 17483 625 439 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149914878|ref|ZP_01903407.1| 30S ribosomal protein S2 [Roseobacter sp. AzwK-3b] # 36 402 30 406 425 245 41 5e-64 MKQTGHEVRTGMKDRAILVSLVTDKMKKHEELVAYSLQELIQLAETAGVEVLETLTQNRE SADTKWFIGKGKVEELKALIDEHQATTAIFDQELSGAQVRNLEESLDVKIIDRTQLILDI FAGRARTREGIVQVELAQLSYLLPRLSGHGKNLSRLGGGIGTRGPGESKLETDRRHIRGR IGELKAHLQEMVRHRTLHRERRRKTGVYQVALVGYTNSGKSTLLRQLTNADVYVQNELFA TLDPTSRTLELPSGKEVVLTDTVGFIQNLPHDVVAAFRATLEEACEADFLLHVVDSSSPM REEQMRVVNEVLGDLGASGKPQAVLFNKIDLCTEQELQMLTTNLPHLRISAYDEADQERV RLLIQETLMGDSRTFRIPADKGDIIALVYRVGDVAESGAEEDVLTFRVNINKEDYDKVQY LLAPYEVKEEKDKQDKQGE >gi|333605868|gb|AFDH01000074.1| GENE 18 17836 - 18072 211 78 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_2357 NR:ns ## KEGG: GYMC10_2357 # Name: not_defined # Def: AAA ATPase central domain protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 4 63 257 319 327 65 57.0 9e-10 MRLESVNKLRDIIIMEKETSLNFNNARFVRNVIEKSIRNQAVRLLSRYKKPSKQDLMEIL PQDVTASENKLKMEYGVS >gi|333605868|gb|AFDH01000074.1| GENE 19 18096 - 18800 478 234 aa, chain - ## HITS:1 COG:BS_spoVK KEGG:ns NR:ns ## COG: BS_spoVK COG0464 # Protein_GI_number: 16078805 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ATPases of the AAA+ class # Organism: Bacillus subtilis # 6 204 4 208 322 227 58.0 1e-59 MDATSRRITVRSNSQINIVFNSQEAAPLIQEPESTTLDIQSETFNETLKELNTMIGLQEV KDLIYQMYATLHINKLRSAAGLKDNSQVYHMIFKGNPGTGKTTVARILAKLFKSLGVLSK GHLIEVERADLVGEYIGHTAIKTRDLIKKALGGILFIDEAYSLARGGEKDFGKEAIDCLV KSLEDHKNDFILILAGYPDEIDYFYRRIRGCLRVFRFKLILRIIMWISLFKSRN >gi|333605868|gb|AFDH01000074.1| GENE 20 18998 - 19711 265 237 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKKLVSALLAAAAPAVSPVTTAYAAVTESEYTDAVSGIRFSTFSILSEHRGITDAAVQYT DPQFKQKSPILQSKLSLPPVEQISEIYDHSVYSDAGTSITGMEPSPRENDIFLVSTARGS SNTITEPKQISASLQISGVHNSGIASLVKLAVIGTASGELIYVWPNSKVYTAPETVPFHR DYYGAVQYVPYSTQVRQTDIYKQYYKSIYIREVQHDRGIVETVSSKAPKTIEYSIDF >gi|333605868|gb|AFDH01000074.1| GENE 21 19874 - 20788 561 304 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MPRLSRKSSPPAACPQCSGKKYISFNWARFQHGHDAESKQVQRALKIERQLKHGWEYACE NCGSRWYLGRDGIMMSYIHPSKAGLVEHWNAGTYEVSDEIWDELGKIGATAQGSIAGGRT SAEVPCRVTTVRGETFDMAYVSFQSRPPIDLWQDGRRIRFCDEVASVEPSPYTLPADVRL ATSRAQEIRMGYAPTAVQAHDGHLFQLNWANDFFASGPYKGEDLRLTDLAGDWDQADMAG VPSEYILYFVADWRADLDSLYLDAAGGRASEQISAVPEEDENRDASAEDESGRLEQAEGT EERD >gi|333605868|gb|AFDH01000074.1| GENE 22 20788 - 21810 1184 340 aa, chain - ## HITS:1 COG:BS_yhfJ KEGG:ns NR:ns ## COG: BS_yhfJ COG0095 # Protein_GI_number: 16078089 # Func_class: H Coenzyme transport and metabolism # Function: Lipoate-protein ligase A # Organism: Bacillus subtilis # 5 333 1 330 331 456 67.0 1e-128 MEVPMLFIDNQSITKPQINLAIEEYALKNLPADETYLLFYINEPSIIIGKNQNTVEEINT EYVEQNGIHVVRRLSGGGAVYHDHGNLNFSFITKDDGESFHNFRKFTEPVVQALRKLGVD AELSGRNDIQVGERKISGNAMFATKGRLFSHGTLLFQSDIEHVVSALRVKADKIQSKGIK SIRSRVANITEFLEKPMTIEEFRQELLETIFGMSASEVPQYVLTEKDWEAIHELSAERYG NWDWNYGKSPKSELVNSKRFPAGTIDVRMNLEEGRIGKMKIYGDFFGVKDVEEIERLLTG VKYDTLSLEQALEGTDITAYFGAVGKEEFIGLLTLKGEEA >gi|333605868|gb|AFDH01000074.1| GENE 23 22009 - 22782 587 257 aa, chain + ## HITS:1 COG:BS_yobR KEGG:ns NR:ns ## COG: BS_yobR COG0454 # Protein_GI_number: 16078966 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Bacillus subtilis # 6 253 3 245 247 160 37.0 2e-39 MRTKMDWLALEKWAANQWPPEESEALGHWRLRASGGFTKRANSVLAVGELPGNLDWYERI CRFYSDRGLPAVFHISDSSPPELDLMLEDKGGIVTAPCFGMMAPAAEMNARLRPYQDRTD VAAELLAAPDPAWIEDYMLLEGHAAEARSFYEGLLERMPAPKVFVRLMSDDGETVALGTA HASDGWAILSNIIVREDRRGQGFAKALLAHLAAWCADNGARSVFLQVLQDNAAALHLYES AGFKPEFRYHYRVLQQD >gi|333605868|gb|AFDH01000074.1| GENE 24 22828 - 23697 226 289 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 43 283 1 238 242 91 31 1e-17 MTTNNEQKQTFPPQHQNNQPGIETQMTPQPQFEDSKYRPAGKLKGKVALITGGDSGIGRA VAVAYAQEGADVAIVYLSEHSDAEKTKSLVEQEGRKCLLIPGDLGDESFCKKVIDQTVSG LGKLDILVNNAGEQHPQNSLEDITAEQLEKTFRTNIFSMFFLTKAALPHLKRGSAVINTA SITAYKGNPTLIDYSSTKGAIVSFTRSLSQSVIEKGIRVNGVAPGPIWTPLIPSTFTKDK VAAFGSDTPMQRAGQPEELAPSYVFLASDDSSYMSGQILHVNGGTVVNG >gi|333605868|gb|AFDH01000074.1| GENE 25 23915 - 24136 336 73 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MEKMCMQMMMTMCMDEMMCKMNTMKSMMDSMMQMNMMSEMNMDMDMMMGKMQECDEKMTM MMKMMSEMKQMSM >gi|333605868|gb|AFDH01000074.1| GENE 26 24281 - 24637 307 118 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_2218 NR:ns ## KEGG: Pjdr2_2218 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 19 113 7 101 106 77 46.0 2e-13 MLKELMVMRTPSVQEWSRKWVDDHLDLYNYAGSLGDTEWQQAIMESLKFRDIYVQQEIRA RLRQDLWKMYDSINLKMLELFEQLRQSKDSTQIETIREQVWVLKSQRIEISKKILAVK >gi|333605868|gb|AFDH01000074.1| GENE 27 24766 - 27318 2516 850 aa, chain - ## HITS:1 COG:BS_pbpF KEGG:ns NR:ns ## COG: BS_pbpF COG0744 # Protein_GI_number: 16078075 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase (penicillin-binding protein) # Organism: Bacillus subtilis # 27 722 16 694 714 470 42.0 1e-132 MAASSKTPSKGKKPKKKGNATKVILGVIIAALLALICAMSIYLVVYLNGLKILNANIDKL DDALGASVIYDADKQEIAKVIKENRENVKFDQFPKQLVNAFVATEDRRFFEHAGVDFWSL GRAVVKDVIARSAVEGGSTITQQLAKNVFLNSDKTFFRKGTEMSIALAIDNQFTKNEILE KYLNRIYFGSQAYGVKAAAKRYFGVTELKDLQLWQIATLAGLPKAPSKYSPISDPEASKD RRTVVLRLMADQGLITEEERAQAAAVDYDPKTQTPVAQSDLFPSFRDYVIKEAYDLYGVT DEQISNGGYKIYTTLNSTAQKAMDKAYTNAKLFQPDGPEQPMQSSMVIIDNASGGIVAMT GGRDYKSGTWNRAFKPRQPGSSFKPLVVYAPAIEKKGYVPTSMLDDTKQEFGKYAPRNYD GQYLGQVDMTYAIKKSKNIPAVWTLSKIGISTGKDFAKQLGITFDENDNNLAIALGGMTK GESPLQMAQAYAAFANNGVYNQGHAILKIEKSDGTAIDYKAEPKKVMSEKTSWYMTQMMR EVVTSGGTGVKADFGRPLAGKTGSTQLDLKGLESHYRDIWFVGYTPQWTGAVWAGFDKTD SKHYIRKNYSDRANMVFSAVMAEAMKGIPVKDFERPSGGKQIEQEKPPVQEKKSVTDLRA GWQNSGVRLSWTAAEGTSAYQVFRKGPGETDFSQLTPSNSTEYMDQTVQPGGTYEYYVVP ANGDAAGVQSNVASVTIPGTEPTPTPSNPDGNNNGENGNGNNNGNDNGNGNGNNNGNGNG NNNGNNNGNGNPGKDKDKDKDKNPGNTGGGTGNGGSSGGTASPTPTPTPSEPAGSGTSGS RDDDRQQNNG >gi|333605868|gb|AFDH01000074.1| GENE 28 27471 - 27716 321 81 aa, chain - ## HITS:1 COG:BH2365 KEGG:ns NR:ns ## COG: BH2365 COG1923 # Protein_GI_number: 15614928 # Func_class: R General function prediction only # Function: Uncharacterized host factor I protein # Organism: Bacillus halodurans # 1 78 1 78 78 110 66.0 9e-25 MKQSINIQDNFLNQLRKESIPVTVYLTNGFQIRGLIRAFDNFTIIIDSDGRQQMVYKHAI STFTPQRSVSLMPAPEQSAAE >gi|333605868|gb|AFDH01000074.1| GENE 29 27773 - 28747 783 324 aa, chain - ## HITS:1 COG:BH2366 KEGG:ns NR:ns ## COG: BH2366 COG0324 # Protein_GI_number: 15614929 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA delta(2)-isopentenylpyrophosphate transferase # Organism: Bacillus halodurans # 8 316 2 309 314 320 50.0 2e-87 MLNSQGAKPKLLVLIGPTAVGKTKLSLEIAEQWNCEILSGDSMQVYRGMDIGTAKATPEE RAAVPHHMIDIHDPGYPYSVAEFQQRVRQLVPEITERGKLPFLVGGTGLYVESVCYEYQF LEAGADEEFRRQKNRFAEEHGDEALHRTLAEVDPDSALKLHPNDRRRVIRALEVYHLTGK PLSAHNAAQKKESPYELCIVGLTMDRQLLYGRIEERIDIMMAEGLVDEVKSLLESGVPRQ SVAMQGLGYKEMVSYLDGEISLERAIELLKRDTRHFAKRQLSWFRHMKDIQWIDVTDTAN FSGHLEHFHAIITGKFVHDNEYNA >gi|333605868|gb|AFDH01000074.1| GENE 30 28741 - 29514 518 257 aa, chain - ## HITS:1 COG:BS_ypiP KEGG:ns NR:ns ## COG: BS_ypiP COG0500 # Protein_GI_number: 16079244 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Bacillus subtilis # 88 256 1 169 172 149 42.0 7e-36 MLVTTSYDPASEDVDKAIAAARTLGGRFVPRKRLTLSGLRSRFGENEILLITKEGLKYDF GGPHALFFHPSMALVRYKRLRQGSSDPLLQLSGADRGDAVVDCTAGLASDSILFSFAVGE EGSVTAWEHGRVLAYLLEQGLESYRTGEAEFDTAMRRVAIRQGDHLDGLRAMEDNSCDIV YFDPMFRAPIQESSGLSPLRSAADDRPLEAAAVEEARRVARRCVILKEGRQSGEFDRLGF RETVPTGSKLAYGVIRC >gi|333605868|gb|AFDH01000074.1| GENE 31 29716 - 32082 1900 788 aa, chain - ## HITS:1 COG:BH2368 KEGG:ns NR:ns ## COG: BH2368 COG0323 # Protein_GI_number: 15614931 # Func_class: L Replication, recombination and repair # Function: DNA mismatch repair enzyme (predicted ATPase) # Organism: Bacillus halodurans # 1 464 1 431 637 404 47.0 1e-112 MGKIRLLDEHIANQIAAGEVVERPASVVKELVENSIDAGSSRIDVVAEEGGLQLIRVTDN GSGIESEDCELAFYRHATSKIQSGKDLFSIRTLGFRGEALPSIAAVSKTEFVTSTDGSGL GRKLAVEGGDVVTQEETSARKGTDISVKELFYNTPARLKYMKTIQTELGHISDYMYRLAL AHPEIAFTLKHNGNSLLQTLGGGDLLQVIAGVYGSAVGKQMIAVGGESLDYKISGYISRP ELNRANRSAMSIMVNGRYVRSFAVQHAIMNGFHTLLPINRFPVVVLHIEMDPSLVDVNVH PSKLEVRFSKEPELVKMIEDMIKEALGRQVLIPKGVQASARIKESFVQETMTLYRPEADP LLKQGTTPAQWREQLSVPADGQAPASADNREGAGEGSDTAQEADERRRSLASLDSLAPPD SAVESGAGSAGSAAEAGAPDSAGRREQQPHADGTTGAQPGAEAALRPPGSAGAQAAGSEA AGSSAPGAAADRRSGFASDAAVPGGPGSVPASAAREAGASRLGEPQSRPSAAEPYGAPYD SGAYVGQPRGGAAAGGGRAGRAPAQDDRPYSREAAGSLLAALPTRSDKEALKRPDFPSLS PIGQLHGTYLLAQNEAGFYMIDQHAAHERINYEYYYTKFGEPQEASQELLVPIPLEFTSA DFQALRDKLPLLEQVGVYLEAFGGNTYLVRAYPHWFPAGDEQAIVEEMCEWILTERKGVD LSKLREKSSTLCSCKASIKANQSLSTVEMEALLDRLGGCGNPYTCPHGRPIVISFSTYEL EKMFKRVM >gi|333605868|gb|AFDH01000074.1| GENE 32 32089 - 33528 1479 479 aa, chain - ## HITS:1 COG:aq_797 KEGG:ns NR:ns ## COG: aq_797 COG0793 # Protein_GI_number: 15606169 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic protease # Organism: Aquifex aeolicus # 68 351 68 354 408 194 38.0 2e-49 MGFPGFRKLKTAAAAVVVFGAVIPASAWAQESAQTTDEVRQVLGQYHVSGITADELKGLS IADMLKKINAKDPYTTYFTKEQLEKFTDSLENNYYGIGAQMGYDDIGVYADKIFEGSPAE KGGLKKGDYILKVAGVSTQGKNLSEVVSGVLGPEGTKIELTVKRDGKELNLTLTRAKIHL PNVEGYLITPSTGYIKIDSFSSDADEIFDATFSALQKMGMKSLVIDLRDNPGGLVESAQN IASKFIKEGVFAHTKNRNNEDTPLQIKGGTTQNLPVFMLMNENSASASEMLAGALRDYGV AEVIGMKSYGKGSMQSLHSLSDESAVKVTFEEYLTPKMKPVNGVGIAPDIEADGYTAQLI TALRKAGTNSFQVRVTKHDVTVNQVEVTEPYRPIREGGNVFVASRTLAALIGADIKWNQT AQAVNISTGKGIHTFAMSPDTLLLKNGTSYINLDKFDDIYPQLHWEDADNLLQLETEKE >gi|333605868|gb|AFDH01000074.1| GENE 33 33660 - 36365 2759 901 aa, chain - ## HITS:1 COG:BS_mutS KEGG:ns NR:ns ## COG: BS_mutS COG0249 # Protein_GI_number: 16078767 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Bacillus subtilis # 1 900 7 858 858 827 49.0 0 MIQQYLAIKAQVPDAFLFFRLGDFYELFFEDAINASRELEITLTGRGGGTEERIPMCGVP YHSADNYISRLIEKGYKAAICEQVEDPSAAKGVVRREIVRIVTPGTVMDGKTLGDASNNY IAAVAQVGGRYGFSACDVSTGELYATSLSDSFQMLIDELNAYAPAEIIGDGPLLDRVRSQ IPLTAKSTVFTAWEQAADDKLAPQFGEGAAGKLDASARRVVSLLLAYLHETQKQSLTHIK EIRAYSPQQYMTMDPFTRRNLELVETVRERSRKGSLLWLLDETVTAMGARMLRRWIEKPL MQADAIRSRHDAVETLYKQFILRDDLRTVLKEVYDLERLVARMAYGSANARDMIALRVSL EQVPRLKDVCAGAGAQVLERLVDEMDPCSDISEMILGAIEDEPPVSVRDGGMIREGYHDY LDQLREASTNGKKWIAELERSEREATGIRSLKVGYNKVFGYYIEVTKANVGSLPEGRYER KQTLANAERFVTPELKEKEALILEAEDKRTDLEYELFVQLRERISSQIGRLQKLAEAIAE LDVYQSLAAVSASNRFIRPEVGDGYDLHIEEGRHPVVEAVLESGAFIENETKLTAGDGSM LLITGPNMAGKSTYMRQVAVICLMAQIGCFVPASSAKIPIIDRIFTRIGAADDLIGGQST FMVEMMDIQVMTEKATERSLVIIDELGRGTSTGEGMAIAQAVIEFLHHEIGCKTLVSTHF HELAHLEESLPQLRNYCMAVKESGQQVTFLRKLIRGAASTSYGIYCAQIAGLPDGIISRS YELLQTFEARAAAEGPEPGAGSSGEGVLTGAPAARTSANASGAGEASAPYGAPEEAASQR SAVEQLSFFEEAKPVRVQAASAKPDPQTQAVIEELKALDLLNITPLQAINVIYELKKKLQ N >gi|333605868|gb|AFDH01000074.1| GENE 34 36436 - 37944 1181 502 aa, chain - ## HITS:1 COG:no KEGG:PPSC2_c2990 NR:ns ## KEGG: PPSC2_c2990 # Name: not_defined # Def: protein # Organism: P.polymyxa_SC2 # Pathway: not_defined # 105 487 32 410 411 250 41.0 1e-64 MQLFVLYSGRDKQTVSVMSRELDLLNIPHGEKLPEKTPVRIAAWGKLSAEQARDLAAMPR RALLQPPEAVSLAVREEDARMQLTVHGIRTIHGSRGDTEAGRRDRGIHRGGGPYSYEYRI AVFHMEALAVYRQKNNLLLLPGSAGTEPSGFQEVSLEQQTFHTQRAVRESVKAVYALGLD YGLVHIAIEPSGRTLVLRVDPSPRPDQPLAALFAHAIGRYAVQLSQELARTEPAVLGSDP EFLLVNPSGKVVSASKYLEREGQVGCDAIVLSGHRLILPLAELRPQPSSEPAQLAANLRR TMRTAARKIGDDSLAWIAGGMPLPGFPLGGHVHFSRCWLNSHLLRALDNYLALPLTMIEG ETTALRRPRYGLLGDYRRQRHGGFEYRTLPSWLVSPEITLGVFALARIIADRYFELDQRP LDDMEAQENYYAGNKPGLADAAESVWADLEKQPMYGEFARYLRPLREQSRRMEGWQELAD FRRSWKIGPYGRKQDAAQENML >gi|333605868|gb|AFDH01000074.1| GENE 35 38046 - 38609 533 187 aa, chain - ## HITS:1 COG:no KEGG:PPE_02612 NR:ns ## KEGG: PPE_02612 # Name: not_defined # Def: spore coat protein E # Organism: P.polymyxa # Pathway: not_defined # 10 186 9 185 185 230 69.0 2e-59 MSIDRNLQSREIIVKAVCGKGRKFSHVSHTVTPPHAPTSILGAWIINNQYEAVKSGEGVE VVGTYDINIWYSYDRNTKTDVAKETVSYAEVVGLSYLDKRHKSATAEVSAVATQEPNCVE ASISGGGNVLIRVEREFHVELTAETKVHVIVDPNGGDFEEKHVDFDLISDDGDFEDLNPD LLEDDLS >gi|333605868|gb|AFDH01000074.1| GENE 36 39464 - 40183 188 239 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_3559 NR:ns ## KEGG: Pjdr2_3559 # Name: not_defined # Def: collagen triple helix repeat protein # Organism: Paenibacillus # Pathway: not_defined # 50 239 65 279 279 95 40.0 1e-18 MNCPKRKRCHKKTVIVCKPKRKNKIVIVKKKIVKVSCPPPTVNVTPIPGPQGLPGPQGPQ GPQGPAGLTGPQGIQGPAGPQGPQGPAGGISSFAFVCSTAAQTIAAAAEPGGQGGAVSFN DSVISATAVTFAPPSSIIINENGFYKITYEVFPTAGNNAFGLFFDPDAAGPTPAALVPCS NYGTGAGNNPYTGQVIVQLTAGGVLTLNRIDNTGALTLQNAIGGGTPTVSASLSIEKLA >gi|333605868|gb|AFDH01000074.1| GENE 37 40254 - 41240 1082 328 aa, chain - ## HITS:1 COG:BS_yqjA KEGG:ns NR:ns ## COG: BS_yqjA COG4129 # Protein_GI_number: 16079451 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Bacillus subtilis # 6 314 4 308 322 177 34.0 3e-44 MNIPFIGIRVLKTALAVIVSITLARWIGLTSPNSAGLLAILGIQVTKRRGINNAFQRIAA SILAVLFASVLFSLLGFHVWVLSLFVLIVFPVLHRIKLSDGAVTASVTIFHIYNAQLISP PLILNEIILLIVGLGSATLINISYMPKADKEIEFYRSKVEGLFSDVFLHIAEHLRDTTVV WNGKELLELDEVLKTGTETASRSIENALLFGTHTYTDMQLYFYMRNEQFESLQRMALLVS QVSRELPLGESLASIFEELSKDCKVDYYTGRSEKKLAALQANFKMETLPQTLSEFEARAA LQQLTRELSYYLNIAKKQKKQKPASARS >gi|333605868|gb|AFDH01000074.1| GENE 38 41349 - 42233 1090 294 aa, chain - ## HITS:1 COG:BS_ytlD KEGG:ns NR:ns ## COG: BS_ytlD COG0600 # Protein_GI_number: 16080114 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type nitrate/sulfonate/bicarbonate transport system, permease component # Organism: Bacillus subtilis # 34 294 9 269 270 268 57.0 8e-72 MSHQPADETAQNQVAGIHAQAHGQKHTDGGTLADTIHAAHLEAKRKVAVRVRVTQLLILV ISLGVWEAAGRLKWIDVLLFSYPSKVFVLLASKIADGSIFPHTGYTVYETVVGFVLGTLF GTALAMLLWWSPFLSRVLDPYIVVLNSMPKVALGPLFIVGFGPGMLSIIATTLSITVIIT TLVVYGSFKEVDDNYVKVVRIFGGSRGEVFRKVILPASFPTIVATLKANVGLAWVGVIVG EFLVSKMGLGYLIVYGFQVFNFTLVIASLVVIAIVATFMYQAVVYLENKLMSRR >gi|333605868|gb|AFDH01000074.1| GENE 39 42230 - 43021 754 263 aa, chain - ## HITS:1 COG:BS_ytlC KEGG:ns NR:ns ## COG: BS_ytlC COG1116 # Protein_GI_number: 16080113 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component # Organism: Bacillus subtilis # 7 256 4 253 260 262 52.0 6e-70 MDTAATVQVSGMTHVYVSDAQANPALENIELTIRPGEFVSLLGPSGCGKTTLLSIIAGLI RPTRGQVRINGREMDSPTSRVGYMLQQDYLFPWRTIYGNAVIGLELLGRLNKETGAYVDH LLEEMGLAPFRDYRPAQLSGGMRQRVALVRTLAARPELLLLDEPFSALDYQTKLQLEDLV VQTLRSRGKTALLVTHDITEAIAMSDRIILLEPHPGRIRREIAVPEHIRQTLPFEAREKP GFHELFHEIWQEFERMGGKEAET >gi|333605868|gb|AFDH01000074.1| GENE 40 43107 - 44114 998 335 aa, chain - ## HITS:1 COG:BS_ytlA KEGG:ns NR:ns ## COG: BS_ytlA COG0715 # Protein_GI_number: 16080111 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components # Organism: Bacillus subtilis # 18 203 19 203 229 269 68.0 4e-72 MKRRSIVFLLLSVLLAGLVLPGCSKQEEVSKIRIGEVTRSIFYAPQYVALSQGFFKDEGL EVDLTTTAGGDKTMTTLLSGGIDVALVGSETSIYVHQQGSDDPVINFAQLTQTDGTFLVS RTKPAGNFDWSALKGKTFLGQRKGGMPQMAGEFALRKHGIDPHKDLNLIQNVDFANISSA FSSGTGEYVQLFEPQASVFEKEGRGYVLASFGVESGKLPYTVYMAKQSFIKKNPNAVQKF TNAVQRAQNWMHTKSVNEIADAVLPYFKDTDPEIVRSVVKRYKDQNTYAGDPVIDEAEWN NLQDVMTQAGELKAKADWSTLVDNSFAEKAKVNVK >gi|333605868|gb|AFDH01000074.1| GENE 41 44269 - 45789 1840 506 aa, chain - ## HITS:1 COG:BS_ypwA KEGG:ns NR:ns ## COG: BS_ypwA COG2317 # Protein_GI_number: 16079266 # Func_class: E Amino acid transport and metabolism # Function: Zn-dependent carboxypeptidase # Organism: Bacillus subtilis # 12 505 9 501 501 572 55.0 1e-163 MSQTDYQGKLDEFRKYIRKIKHYEEAVGLIYWDLRTGAPKKGASERSEVIGELSTEAFRL SVSDQMGEYLDFFSDTARIEELDETNCRIVHEAKKEFDRSKKIPPEKYQEYVVLTSKAES VWEEAKEKNDFAMFQPYLEKIVETNLEFVDLWGYKGHKYNTLLDMYEPGMTVEKLDEVFG ALRSEVVPLLAEIKKAPQPDRSFLRQTFDKEKQKHFSLFILKELGYDFEAGRLDETVHPF ATGLNPGDVRITTRYLPEDATSALFGTIHECGHALYEQNISEDLIGTNLCTGTSMGIHES QSRFWENMVGRSREFWSRYYADLQRTFPGQFDNVSEEAFYRAINHTEPSLIRIEADELTY NLHIMIRYELEKALFSGELNVADLPEAWNAKYREYLGIEADTNAEGVLQDVHWAGGSFGY FPSYALGNMYAAQFTNTLRKEIPAFDELLAKGDFAPIKQFLVEHIYRYGKSQTPNEIVRR VTGEDLNPQYLVDYLKDKYKPLYGLS >gi|333605868|gb|AFDH01000074.1| GENE 42 45900 - 46223 494 107 aa, chain + ## HITS:1 COG:lin0793 KEGG:ns NR:ns ## COG: lin0793 COG4918 # Protein_GI_number: 16799867 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 103 1 104 116 65 38.0 2e-11 MYIHFSEAAVEALTNRLPQDAILRLFYDTEGCGCALAGVAALQIQAAHTEGDVDARSNAF TVQYDPRKEVFFEENLSVDYMPQRGTYVLKSSQQTYNPAMRLVNCVN >gi|333605868|gb|AFDH01000074.1| GENE 43 46290 - 46892 691 200 aa, chain + ## HITS:1 COG:BS_ytiB KEGG:ns NR:ns ## COG: BS_ytiB COG0288 # Protein_GI_number: 16080121 # Func_class: P Inorganic ion transport and metabolism # Function: Carbonic anhydrase # Organism: Bacillus subtilis # 1 186 1 186 187 253 60.0 1e-67 MSLISEILNYNESFVESKEYEQYLTTKFPDKRMVILTCMDTRLVELLPKAMNLRNGDSKI IKNAGALVSHPFGSIMRSIIVAVYELDADEVLVIGHRDCGMTGLNSEKVLSKARERGVQT EVLDTLHNSGINLDKWLTGFEHIDEAVIGSVNIIRNHPLLPKNLPVHGLVMNPQTGKLDL LTEGYDATPVKTNPEEYPFI >gi|333605868|gb|AFDH01000074.1| GENE 44 47035 - 48231 1428 398 aa, chain - ## HITS:1 COG:BS_yhjI KEGG:ns NR:ns ## COG: BS_yhjI COG0738 # Protein_GI_number: 16078116 # Func_class: G Carbohydrate transport and metabolism # Function: Fucose permease # Organism: Bacillus subtilis # 9 395 10 392 401 112 26.0 9e-25 MKRFAQASYVMYFLAGLVITTIGSVLPQILRHYEVTYTMGGQLVFWGSIGFLVGVPVATL LLNRFSEKQILALACLIIAGSQFMMWSLPPFSAMLVINFMNCLGTAAVETIVATLMMEVF VGRRAVVMSYLEVSFGLGALLMPVISSLLISMDLWRYSFVVTGVMALAMTGVWVFITYSK TDLDDNAAKDASNMAPPENISARLKWLLLVFFGFMIFMYCGIEGSMNNFLSSIFISYLDA APFLAALSVGLFWGAMVLGRLATGWIIRKITYSRFLFISMASSLIVLAAFIVLQNIWTGY VLIVALGLLLSGVYSITMVYANHTFPGLARLVTSLITGLAGLGGAVFPALIGYVMDQAGT SRALWMTVGFAVFYLLGLAVIEAVYKKTRRSDPSSPAS >gi|333605868|gb|AFDH01000074.1| GENE 45 48490 - 50769 2406 759 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MEKDKRNKLPKLLVTLTAAVAISSAGWSGPFTGKASAGAAGIFVSPKVYFTVEDVSLAKG TGKSSLHFTLLLHNEGSGTVDLNAFAVSVNAPDGSRYTPKLSGTSSARVWPDSTGRYIYT AEVSSQASLDTLKLSLNRWASDGVSKGAGIGSLPLAADAAPAPDKPVRVQLSEADASLPE DAVLTIRAQDSIRWNRDSGQELYTHLTVVNEGSTALKWNDNVLLSVQDAKGRTYTAAVVS GADTLLEPQEPAVLTVKTSAAGSASPGTALKLVLSAKNSGGTFTIGTVPVPDETTAVSVG EAIPYVYGDGLELTYRSAVVNAKTDGTTVQTVVEFRNTAKEHVRLPDLSAVYQFGSRATV DGVIDAKPSSAFLAPGESASYRYTASLPTGVSKDAIELLLLAKESAAETTAESGGGSNGS ADAAGASGATASGAKASASSAGTTAGSGASSAAKATASGGSSSAAAASSGSGKSTAAGST GYVPAAALSLAKADSGKGGDYAAAQPYTLGEKLPLPNGALEAGLGVSLVEFHKHENEEIG YQTAVAKYKFTNTSGKTLDLPQLGMELTTPDGLVYAGTRQSSAAASILPGTAAVVSYSYM IPPSDKTETLAMTITDANKMSLGSYKVAFQAEAGSGPVSFYPFEVAFNDSTVGWTYSTKT DAQYTYKLILDMTITRKEQVIVDSNFSKMEIELLDPDNRSLASQTVPFLGTGRLVSGKQT FFFNDVKSEQFSSGAHFNIYEVIETPNGPVRRLIKTIQG >gi|333605868|gb|AFDH01000074.1| GENE 46 50802 - 51980 447 392 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163788031|ref|ZP_02182477.1| 50S ribosomal protein L9 [Flavobacteriales bacterium ALC-1] # 5 390 7 411 413 176 30 2e-43 MKFTELIRMAMKTVTGSPLRTFLTMLGVIIGVCSVIALVALGNGTTDKIKAQYENLGTNL LVVNVNGMGRATQLDYNELMQFEGFPEISAIAPTMTKNGAHIKADRTQDTSNVIGTNDRY QSIVKADVASGRFLSPSDLEFRSKVAVIGSEVAKTYFGTLDPVGETIRIEGIPFTVIGQL KEKGSNIGGTSVDSSILVPLETARRQFQLGTIRTTYIEAPTRDDIYKAQNTMKSYLTYKF KSDTGFTLINQDELLAASTKATDTLTKQLVSVAAISLLVGGIGIMNIMLVTVSERTREIG IRKSIGAKRRSILLQFLVEATVISGLGGLFGLLLGIGIVYGWPLFSKEQTLRLSLDVCLY AFAFSVLVGVVFGLYPANKASKLHPIDALRSD >gi|333605868|gb|AFDH01000074.1| GENE 47 51977 - 52687 338 236 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 3 221 1 218 245 134 36 1e-30 MNMIELQGITKVYRQGAQELTILKKLDLSVAAGEFVAIVGPSGSGKSTLMNTLGLLDVPT TGSYFLDGVQTERLSDNQLSELRNRKIGFIFQQFNLLPRLSAFENVELPMIYAGIPAKQR AEKARAVLEKLGMKGREHHKPSELSGGQQQRVAIARSLTLSPPLLLADEPTGALDTRTGQ EVLELILELNGQGHTIALITHDLHIADCAKRIVSIRDGEIVGDRLSLAQAAQGVPS >gi|333605868|gb|AFDH01000074.1| GENE 48 52715 - 54424 1831 569 aa, chain - ## HITS:1 COG:CAC0318 KEGG:ns NR:ns ## COG: CAC0318 COG0845 # Protein_GI_number: 15893610 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-fusion protein # Organism: Clostridium acetobutylicum # 239 512 44 361 392 97 26.0 5e-20 MKWSGKVIGMSLAGVLLVGAGGYFAFGAVKKPMAGAAAQEVVVAVKKGDIRSTVSGTAQF EPKEKQTIVSPADATIKVMHLTRNMPVKAGDVLVELGSPTLENNLQKALMTQADIEKQIA ELRQQQANMGTSAPIGGQLVLAPNIEVGSNVNKNTKIATVNDTTNLLASALFPYEEALQL RSGEEIDLTVDGFSLTKTGRVDAVNKTAKSDGKGGKALEVQIRIQNDGTLDAGLKVKASA RIGSVSVDAVAESSLEYAKSAPVVAGVQGTVSSLPNKSGTLVKAGASVAVLENDTIQSDI SDKEAALEQQKLAVQEARDKVADLVVKAPFDGVFSTDFVNTKENILASLTPGAKVKNAFE FGAVANMDLMQLPIQVDELDLNAIKTGMKAEVSVDSLQGKKFEGEVTQISSMGTTTNGVT FYDVILAVKNTNELKYGMTATANILIENKTGVLYLSPEALQSRQGKRYVTLKKADGTTEA QHEVKIGIRSTTQVEITEGLKEGDKVVVPQKTQQTKMTQQEIDRLRQQYQGGQGGQGGGG FQGGGGFPGGTQGGQSGQGGGGQRANQTR >gi|333605868|gb|AFDH01000074.1| GENE 49 54428 - 55114 222 228 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNFRRKLYSRWIGAACLLPLAFTFTFAFGGSRSPHTGTLEPAAALSASQPAYEANGAAAF QTGNRPENTEPAIQTSRERLLVLFCATLLEVGKEPGFSLTPAQAEQLAGILQRSIGRGEM TQEESEEAKRLLTGKQRDMFEKVFADDAKRSLQGRARETGGNREHCGDTAPYFYDSVPHG GTDPAQESSAFRPAECGPLKDEPELNLEQQTLHMLNRQKSAAITGRNK >gi|333605868|gb|AFDH01000074.1| GENE 50 55277 - 56755 1419 492 aa, chain - ## HITS:1 COG:CAC3219 KEGG:ns NR:ns ## COG: CAC3219 COG0642 # Protein_GI_number: 15896466 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Clostridium acetobutylicum # 1 466 5 467 475 177 26.0 5e-44 MYLRVFLLFLAVCVLFFVGLALFWNMYFQNFFYKDKQEFLKKGYVEVTKLLAPFQEGTLS TRELRMATRIVARGVNGRIFLVDGKGVILNGSTEYETFKLPPTLEKSLGSGLEGKSGFFF DEPPSERRPGDKRPMDTLLTYYAPAQIGGETIVVFLQVPVAEIRQTISVIRLIILLPLLF SLLAVGLLLYFISRRMTAPLKQMNELASAIEQGDLSLRVPVTSKDEVGELAESFNRVVDR LQEWEGTRQEFLAQVSHELRSPLTSLRGLISAMRDGIIEPDKYGHYFRICESEVRRLERL VQELLDLARIQNGAGLRELKPVDMVAQTGEVLDVMREIFARKRLELAERVDVPAGEGLFA RLDADRYAQIVHNLLYNAVQFTPEGGTVKVRLERKADKAVLTVSDTGIGMTAEETQRIWE KFHKVDRTRGGTTEGVGLGLTIVKHLVEAMNGRITVQSRPGEGTAFYVEFAHVSGNGGHP GAKPGDSDSSAG >gi|333605868|gb|AFDH01000074.1| GENE 51 56793 - 57521 809 242 aa, chain - ## HITS:1 COG:CAC3220 KEGG:ns NR:ns ## COG: CAC3220 COG0745 # Protein_GI_number: 15896467 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Clostridium acetobutylicum # 4 236 7 227 228 214 46.0 1e-55 MKDKIAVVDDEPYIAEVARLYLEHAGYQPLIVDHAAEVLPLLREHNPSLVILDVMLPDGS GFDVCRSIRSMSKPLCDVPVIMLTARGEAFDKLEGFNVGADDYLVKPFDPSELIARVKAV LRRSKPEETAAAPADPSLPQPIRIGTLTIDFARYRVELEGSRIDLTPKETELLYFLASRA GRVFSRDDLLAGVWAFDFPGGTRTVDAHVKNLRKKLGSQPEWRIETLWGIGYSFEVTAHE KG >gi|333605868|gb|AFDH01000074.1| GENE 52 57518 - 58060 490 180 aa, chain - ## HITS:1 COG:BS_ypuF KEGG:ns NR:ns ## COG: BS_ypuF COG1547 # Protein_GI_number: 16079380 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 4 159 2 158 174 136 46.0 2e-32 MERYPKEVLDYLVHFHGDRDFFECHEILEEYWKENPGHPYAETLVGLIQVAVGLYHQRRG NKAGAVKMLGSSLAYLKVEDLKGLGMAGEDLVARVRQRVREAELDAVPYADLDLPVEDPS LLEACKRECALRGFGWGAASDAGNLMLIDRHKLRDRSDVVEERARQLEARKLRRKGVEDR >gi|333605868|gb|AFDH01000074.1| GENE 53 58294 - 58455 190 53 aa, chain + ## HITS:1 COG:no KEGG:BC2612 NR:ns ## KEGG: BC2612 # Name: not_defined # Def: hypothetical protein # Organism: B.cereus # Pathway: not_defined # 1 52 22 72 72 65 65.0 7e-10 MAKDVLCEVNSCRHWSNGNKCAAESIYVVSHHDGNQARHSEETDCKTFESKLS >gi|333605868|gb|AFDH01000074.1| GENE 54 58693 - 59100 440 135 aa, chain + ## HITS:1 COG:no KEGG:BBR47_56950 NR:ns ## KEGG: BBR47_56950 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 13 127 29 137 144 88 46.0 7e-17 MACMLTFSVTMPGTVEAKKSYSSTKKSYTPSTTNKSNDSSVNKSTPSNSSKTTSTAPTQK RGFFSGGLMKGLLIGGLAGMLFGGLFGGMGMLGNVLGFMVNMLAILLIVMVIRRIVVYFM DKRKADKLKEKHNLT >gi|333605868|gb|AFDH01000074.1| GENE 55 59097 - 59372 376 91 aa, chain + ## HITS:1 COG:no KEGG:PPE_02623 NR:ns ## KEGG: PPE_02623 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 1 90 1 91 92 84 51.0 2e-15 MKLTEQEITNALCVNMAQRKQLHPSQVEVVLMWDEDLGFSAEVFAEGRNQILIEANIYEA IMQYLSQQQIRVFRDQIQLDLEDEIVAYIHE >gi|333605868|gb|AFDH01000074.1| GENE 56 59505 - 61406 1978 633 aa, chain + ## HITS:1 COG:BS_yvbX KEGG:ns NR:ns ## COG: BS_yvbX COG3858 # Protein_GI_number: 16080455 # Func_class: R General function prediction only # Function: Predicted glycosyl hydrolase # Organism: Bacillus subtilis # 358 629 63 339 344 108 26.0 2e-23 MKAVHWILTGAVVVSLCSPLQAQAADKTTKYRVYQNNKIVTELSDYSQAEAYAKQFKNSH VEEISTRKWVWNNFPRYQVFQYDFTQPQWTFPTLDAAVAEAKRWGHASVRDLQSGGWVWN NYPRYRVYQGDSTQTSWEFTTLADATAEARKWRHAHIIDLGTNKWVWDNISAADKSSLRS GTPVYRVYQDAYSAPAWSFAYLEDAVNESLKWGGSKVVRTTDNAVVHTNEASYKVYQSDN FLSEFQSLDAAAAYASRWAHSEISYNGKIIWSNYPYYQVLQNNTLIGDFNTIPQALEYAS KYSNSTIRTLDRNVIWDNLRKMQYWGWTGSSAASTIQAQASGTVGLDVVSPTYFQLADAS GKVDDKSEAATVDWLKKQGFTVYPLINNQFNAEMTSAFLANPAAQTAFIRQIVDKAAALK VDGLNLDFESLSAKDRASYTAFVKQFTDAAHAKKLSVSIDLPRGSIKWNDKTAYDHEKLA SYVDYIAIMAYDQYWKGSTEPGSVSGLPWAEQGVIEFLSYGIPRDKLIMGIPYYVRDWTL DAAGKPVENKAILLKDIPALITAKKAVKTWDNEFKQYRVDYTEDGKKHVFWLEDNDTVKQ RLAIARKYDLAGVAAWRLGYDTPQLWEMMLQEK >gi|333605868|gb|AFDH01000074.1| GENE 57 62350 - 62520 72 56 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVKRMVSKFVLAKQRLMADELIIVSNKPIDFRISDIEDDVKFFTLKELIKYLKQLK >gi|333605868|gb|AFDH01000074.1| GENE 58 63937 - 64878 116 313 aa, chain - ## HITS:1 COG:no KEGG:STAUR_2577 NR:ns ## KEGG: STAUR_2577 # Name: not_defined # Def: hypothetical protein # Organism: S.aurantiaca # Pathway: not_defined # 119 313 113 294 299 148 40.0 3e-34 MYQSTDTKKLVTEIIATLVHIKSTMYELILKPAGINKNYFQSLTKQKNGSGKWLTKREIA SKIITAIENHANYKKIMRSIIKTASEWNQFHLADDEYVARATVQKAREVLGVLDLWGEKE AKEREHERKKAEKEKKAQKEKDLIKQLQLLLLTYDSISGKSENPQLRGTTLEDIVNRLFN AYDLMEQLTVVQAFRRNANGEQIDGAFKLDGWHYIVEMKWTSQVSGIRELDSLYGKVSRS GKQTMGVFISINGWSSHVIDLIKQNPDKSILLMSGYDLRVALTKEVELIKMLHKKLSKLN LEAEPYFGAESML >gi|333605868|gb|AFDH01000074.1| GENE 59 64948 - 65658 113 236 aa, chain - ## HITS:1 COG:no KEGG:Cpin_3509 NR:ns ## KEGG: Cpin_3509 # Name: not_defined # Def: hypothetical protein # Organism: C.pinensis # Pathway: not_defined # 3 236 330 563 572 142 37.0 1e-32 MGLRELESKIKIEYELYEEHAVESERILSLMENKQGEVHLKDIIQNEGKKNLKSIVQEEL DELRSQIAMNEVSINELKKEMKSYEDRKHKTKIEKYYRELMSDYLDDLGVETVPEKSYKT IISKVTDTGSGAPRAYLAYYYSLLGVINKYSTSTFCPIILDSPNQQEQDRSHWDMIKDFI ITKQPLNSQLILGTVEFGDRQFEGEIIELNEKYHFLQEEDFEEVSHEINELLSFIS Prediction of potential genes in microbial genomes Time: Sun Jul 17 09:29:21 2011 Seq name: gi|333605800|gb|AFDH01000075.1| Paenibacillus sp. HGF7 contig00173, whole genome shotgun sequence Length of sequence - 59308 bp Number of predicted genes - 65, with homology - 58 Number of transcription units - 32, operones - 15 average op.length - 3.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 43 - 426 381 ## Pjdr2_2388 spore envelope assembly protein 2 1 Op 2 . - CDS 423 - 1049 348 ## 3 1 Op 3 . - CDS 1104 - 2159 902 ## COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases 4 1 Op 4 1/0.200 - CDS 2187 - 3443 1009 ## PROTEIN SUPPORTED gi|89099121|ref|ZP_01172000.1| 30S ribosomal protein S1 5 2 Op 1 3/0.000 - CDS 3550 - 4137 443 ## COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase 6 2 Op 2 1/0.200 - CDS 4134 - 4817 251 ## PROTEIN SUPPORTED gi|15639271|ref|NP_218720.1| bifunctional cytidylate kinase/ribosomal protein S1 - Prom 4876 - 4935 6.3 7 3 Tu 1 . - CDS 5249 - 5908 641 ## COG5581 Predicted glycosyltransferase - Prom 5947 - 6006 5.0 - Term 5975 - 6025 16.5 8 4 Op 1 . - CDS 6037 - 7422 1448 ## Pjdr2_2381 germination protein YpeB - Prom 7471 - 7530 1.9 - Term 7481 - 7521 5.7 9 4 Op 2 . - CDS 7557 - 7712 119 ## gi|167463602|ref|ZP_02328691.1| hypothetical protein Plarl_13784 10 4 Op 3 . - CDS 7778 - 8476 842 ## COG2339 Predicted membrane protein 11 4 Op 4 1/0.200 - CDS 8519 - 9769 1316 ## COG0334 Glutamate dehydrogenase/leucine dehydrogenase - Prom 9796 - 9855 2.3 - Term 9796 - 9849 12.1 12 5 Tu 1 . - CDS 9958 - 10563 458 ## COG4862 Negative regulator of genetic competence, sporulation and motility - Prom 10678 - 10737 5.9 - Term 10722 - 10766 7.5 13 6 Tu 1 . - CDS 10814 - 11170 319 ## 14 7 Op 1 . - CDS 11395 - 11625 272 ## Pjdr2_2374 hypothetical protein 15 7 Op 2 . - CDS 11632 - 12243 563 ## COG1266 Predicted metal-dependent membrane protease - Prom 12402 - 12461 4.4 16 8 Tu 1 . - CDS 12507 - 12833 331 ## COG0607 Rhodanese-related sulfurtransferase - Prom 12896 - 12955 4.3 17 9 Tu 1 . + CDS 13343 - 14926 1889 ## COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases + Term 15045 - 15108 7.9 - Term 15039 - 15089 6.1 18 10 Op 1 40/0.000 - CDS 15230 - 17098 2045 ## COG0642 Signal transduction histidine kinase 19 10 Op 2 2/0.000 - CDS 17100 - 17813 788 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 20 10 Op 3 8/0.000 - CDS 17868 - 19127 1339 ## COG0755 ABC-type transport system involved in cytochrome c biogenesis, permease component 21 10 Op 4 2/0.000 - CDS 19124 - 20791 1700 ## COG1333 ResB protein required for cytochrome c biosynthesis 22 10 Op 5 5/0.000 - CDS 20827 - 21372 555 ## COG0526 Thiol-disulfide isomerase and thioredoxins 23 10 Op 6 2/0.000 - CDS 21434 - 22180 733 ## COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases - Prom 22200 - 22259 1.7 - Term 22414 - 22474 12.4 24 11 Op 1 4/0.000 - CDS 22482 - 23018 630 ## COG0700 Uncharacterized membrane protein 25 11 Op 2 2/0.000 - CDS 23026 - 23625 730 ## COG2715 Uncharacterized membrane protein, required for spore maturation in B.subtilis. 26 11 Op 3 . - CDS 23653 - 24828 1004 ## COG1686 D-alanyl-D-alanine carboxypeptidase - Prom 24965 - 25024 2.9 + Prom 24927 - 24986 7.8 27 12 Tu 1 . + CDS 25182 - 26489 1522 ## COG1055 Na+/H+ antiporter NhaD and related arsenite permeases + Term 26527 - 26568 6.4 - Term 26515 - 26556 9.4 28 13 Op 1 . - CDS 26580 - 27056 661 ## COG3874 Uncharacterized conserved protein 29 13 Op 2 . - CDS 27182 - 27916 679 ## PPE_02790 hypothetical protein - Prom 27941 - 28000 2.8 - Term 28004 - 28053 10.1 30 14 Op 1 21/0.000 - CDS 28063 - 28893 913 ## COG1386 Predicted transcriptional regulator containing the HTH domain 31 14 Op 2 . - CDS 28862 - 29644 906 ## COG1354 Uncharacterized conserved protein - Term 29654 - 29692 -0.2 32 14 Op 3 18/0.000 - CDS 29742 - 30212 630 ## COG0054 Riboflavin synthase beta-chain 33 14 Op 4 15/0.000 - CDS 30279 - 31502 1300 ## COG0807 GTP cyclohydrolase II 34 14 Op 5 16/0.000 - CDS 31542 - 32210 763 ## COG0307 Riboflavin synthase alpha chain 35 14 Op 6 . - CDS 32195 - 33334 1027 ## COG0117 Pyrimidine deaminase 36 15 Tu 1 . + CDS 33173 - 33496 152 ## + Term 33743 - 33772 -0.5 + Prom 34051 - 34110 3.4 37 16 Tu 1 . + CDS 34319 - 34582 116 ## + Term 34605 - 34638 -1.0 - Term 34562 - 34615 8.6 38 17 Tu 1 . - CDS 34631 - 35062 575 ## COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family - Prom 35130 - 35189 3.5 - Term 35259 - 35298 8.2 39 18 Tu 1 . - CDS 35340 - 36671 1315 ## COG0019 Diaminopimelate decarboxylase - Prom 36736 - 36795 4.5 - Term 36729 - 36764 -0.5 40 19 Op 1 . - CDS 36814 - 39054 1492 ## PPSC2_c3177 GerA spore germination protein 41 19 Op 2 . - CDS 39073 - 39492 564 ## PPE_02803 hypothetical protein 42 19 Op 3 . - CDS 39489 - 40031 602 ## PPE_02804 stage V sporulation protein AA 43 19 Op 4 . - CDS 40124 - 40213 62 ## - Prom 40260 - 40319 2.7 + Prom 40183 - 40242 2.3 44 20 Tu 1 . + CDS 40318 - 40527 337 ## COG2155 Uncharacterized conserved protein + Term 40650 - 40689 5.3 45 21 Op 1 6/0.000 - CDS 40660 - 41415 927 ## COG1191 DNA-directed RNA polymerase specialized sigma subunit 46 21 Op 2 8/0.000 - CDS 41428 - 41874 496 ## COG2172 Anti-sigma regulatory factor (Ser/Thr protein kinase) 47 21 Op 3 2/0.000 - CDS 41871 - 42224 412 ## COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) - Term 42292 - 42324 -0.8 48 21 Op 4 . - CDS 42345 - 43520 1280 ## COG1686 D-alanyl-D-alanine carboxypeptidase - Term 43659 - 43699 6.3 49 22 Tu 1 . - CDS 43715 - 46420 2618 ## COG0642 Signal transduction histidine kinase - Prom 46568 - 46627 6.6 - Term 46638 - 46680 8.4 50 23 Op 1 . - CDS 46696 - 47076 335 ## Pjdr2_2076 cytochrome c oxidase subunit II - Prom 47101 - 47160 4.3 - Term 47113 - 47158 0.1 51 23 Op 2 . - CDS 47246 - 48067 965 ## COG0005 Purine nucleoside phosphorylase - Prom 48199 - 48258 4.4 - Term 48282 - 48307 -0.5 52 24 Op 1 . - CDS 48319 - 49236 864 ## COG4974 Site-specific recombinase XerD 53 24 Op 2 . - CDS 49300 - 49536 313 ## gi|253576346|ref|ZP_04853676.1| predicted protein - Prom 49558 - 49617 2.3 - Term 49616 - 49654 4.0 54 25 Tu 1 . - CDS 49661 - 50470 224 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 - Term 50670 - 50705 -0.5 55 26 Op 1 2/0.000 - CDS 50707 - 51228 547 ## COG0735 Fe2+/Zn2+ uptake regulation proteins 56 26 Op 2 . - CDS 51331 - 51972 801 ## COG1300 Uncharacterized membrane protein - Prom 52013 - 52072 2.3 - Term 52047 - 52097 5.2 57 27 Op 1 . - CDS 52161 - 52664 621 ## Bsph_3662 hypothetical protein 58 27 Op 2 2/0.000 - CDS 52728 - 53957 1342 ## COG1379 Uncharacterized conserved protein 59 27 Op 3 . - CDS 53957 - 54442 548 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes - Prom 54565 - 54624 8.2 + Prom 54614 - 54673 2.4 60 28 Tu 1 . + CDS 54740 - 54877 80 ## - Term 54743 - 54782 -0.1 61 29 Tu 1 . - CDS 54913 - 55938 800 ## COG1316 Transcriptional regulator - Prom 56095 - 56154 3.1 - Term 56127 - 56177 -0.5 62 30 Tu 1 . - CDS 56196 - 57332 1265 ## COG2195 Di- and tripeptidases + Prom 57312 - 57371 4.6 63 31 Tu 1 . + CDS 57404 - 57505 152 ## 64 32 Op 1 24/0.000 - CDS 57512 - 58915 1301 ## COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes 65 32 Op 2 . - CDS 58930 - 59307 556 ## COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit Predicted protein(s) >gi|333605800|gb|AFDH01000075.1| GENE 1 43 - 426 381 127 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_2388 NR:ns ## KEGG: Pjdr2_2388 # Name: not_defined # Def: spore envelope assembly protein # Organism: Paenibacillus # Pathway: not_defined # 1 125 1 125 304 180 68.0 2e-44 MIAHMLSQKETVAVFVGLFFGIASRLYLLRTDYRQYPTYPHGKIIHVSLGVIAAGLGAVA VPALLDKNYTAVTFLTVAAQQFRDVRNMERQSLMQVDQMELVPRGVSYIEGIAMVFEGRN YLVILPR >gi|333605800|gb|AFDH01000075.1| GENE 2 423 - 1049 348 208 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNPGYLASVLLAISVIFLLSGWREIFMRSISGRDILLFFMFALPAAWLTFSVGGALINGT VPVAFCAALLIGIRKKSLWEGGHLFATGLLLGAVHLLMLELYSVDPVMIVLKPEWDIAVV LAVLVMGMHRGAAEQYVSLTVAMIAGDLSFACMHGGTMPVHLGTPSFLDKWWLSFLTARL LTVFLESVYSGCRTTARQWIQRKRGWRK >gi|333605800|gb|AFDH01000075.1| GENE 3 1104 - 2159 902 351 aa, chain - ## HITS:1 COG:lin1420 KEGG:ns NR:ns ## COG: lin1420 COG1304 # Protein_GI_number: 16800488 # Func_class: C Energy production and conversion # Function: L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases # Organism: Listeria innocua # 1 347 8 357 358 248 39.0 2e-65 MRSSRKMDHVQFALQTGQSGNQGLTDVKLVPNCLPDASTESVALFTTIGELNLSSPIVVN AMTGGARETEEINRELAVAARERGLAMAVGSQMSALRDPLQESSYRIVRQMNPDGLVFAN LGSEATVEQAARAVDMLRADALQIHLNVMQELIMPEGDRSFHGMLERVSRIAAGTGVPLI VKEVGFGIPRENARLLKSAGVQILDVGGSGGTNFAAIENARRKLPLDWLNDWGMKTSVTL IEALQVYERGRVMATGGIRTSEDIVKVLALGASAAGMAGALLKILQGEGTQALIDHIDEL HHGIVLMMTALGTVRIEQLWTRPVIITGSTAEWCNARRIDLTEYACRTEAE >gi|333605800|gb|AFDH01000075.1| GENE 4 2187 - 3443 1009 418 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|89099121|ref|ZP_01172000.1| 30S ribosomal protein S1 [Bacillus sp. NRRL B-14911] # 1 418 1 385 385 393 49 1e-108 MSEEIKNENQTNESQEAQEAMSQVAAVKKGDIVKGKIIKVEQDQAIVDIGYKYDGTIPLR ELSSVQIENADQAVQEGQEIELKIVTIDDNKEKLVLSKRSVDSEKAWETLQQKLDEKVII EAVVAEVVKGGLVVDVGVRGFVPASMVERSFVEDFSDYKGRTLRLRVKEIDREKNKVILS QKDVLDEEYEAQKKDIISKIEVGKVYEGTVQRLTQFGAFVDIGGIDGLVHISEMAWHHVE HPSEIVKEGDKVSVQVLKVDPEKDKVSLSLKATQEGPWEKAEKTFTTGEIITGTVKRLAG FGAFVEIAPGVEGLVHISQIAHRHIATPQEVLKEGQEVKVKVLDVNAAEKRVSLSIKETE EAPAQTASSAPSNYSSRPERSSNHQKELAGNENVSLSNQGLSMTLGERFGDKLSKFKK >gi|333605800|gb|AFDH01000075.1| GENE 5 3550 - 4137 443 195 aa, chain - ## HITS:1 COG:BH1635 KEGG:ns NR:ns ## COG: BH1635 COG0204 # Protein_GI_number: 15614198 # Func_class: I Lipid transport and metabolism # Function: 1-acyl-sn-glycerol-3-phosphate acyltransferase # Organism: Bacillus halodurans # 1 191 1 193 195 165 44.0 4e-41 MSFYHFARGVCNVVYSLLFRIRVIGKDNIPEHGGVLLCSNHISNFDPPLVGIRLKRKVHF MAKAELFQIPVLGLIISKIGAFPVKRGGVSKETIKGTLNLLRDGNVLGIFPEGSRKNPGV GKKGAAMFALKSGAAVVPTAIIGDYKVFGRMTVIYGKPLDLTPFSEAGSADLEQVTEYIM QEIKTLIREHRKEVA >gi|333605800|gb|AFDH01000075.1| GENE 6 4134 - 4817 251 227 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15639271|ref|NP_218720.1| bifunctional cytidylate kinase/ribosomal protein S1 [Treponema pallidum subsp. pallidum str. Nichols] # 6 227 37 294 863 101 32 1e-20 MTKFNIAIDGPAGAGKSTIARKVAGELGFVYVDTGAMYRAVTWKVLQDGVDPLDTETVAR TAAGMKIELVPGPDGQLVFVDGRDVSSDIRTKLVTDQVSQIAAIAEVRKLLVDKQKQMAA SKGIVMDGRDIGTHVLPDAEVKVFLTASVRKRAERRFQEVQGTAMATTLEEMEKDIARRD MLDEGREVSPLVQAADAVMLDSTDLTIPEVVESILEMCRLRAGGERA >gi|333605800|gb|AFDH01000075.1| GENE 7 5249 - 5908 641 219 aa, chain - ## HITS:1 COG:BH1633 KEGG:ns NR:ns ## COG: BH1633 COG5581 # Protein_GI_number: 15614196 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted glycosyltransferase # Organism: Bacillus halodurans # 20 214 18 216 225 75 25.0 6e-14 MAQLMKINQLLHLHVNTIDEEEAKQEYKARISDVLPDRLWIETPMNERTGRLKRLYTGDE VSAFFVTDGGVKNYFQTSVIGFKEEGIRLVALAMPDPASITKVQRRSFLRIPAELEISVQ AGDTVPIVALTEDVGGGGVSFTCKGSEFPDNVTQVNCWLLVTYKNGTLEHLPFKAEVVRV KTLETGRKIVMLQFSEITDRDRQKLIQYCFEKQFDFRKK >gi|333605800|gb|AFDH01000075.1| GENE 8 6037 - 7422 1448 461 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_2381 NR:ns ## KEGG: Pjdr2_2381 # Name: not_defined # Def: germination protein YpeB # Organism: Paenibacillus # Pathway: not_defined # 1 448 1 445 452 456 51.0 1e-126 MYRKMSMVLFPVCAAALVGTGVWGYSQQKQKNQVSIKAENQYQRAFHDLSYHIEKLHTEL GNTLAINSTSNDTYRKGLVNVWRLTSQAQNEVNQLPLGLLPFNKTEEFLSNVSKFSYQTS TRDLTKKPLTDGELKTLSTLYEHSKEITGDLRGVQEKVIANNLRWMDVDLALGSNKEPND NTIIDGFKTVDKKVGSYNDLKEGPFTMSTQSKYTAQMLDGPEIDEQEVRKKAAAFLGVNN PAIFNVVKNGNGAVEYESYTCSLPGKNGADITMDFTKKGGQLIYFMNPRDVKSTKLQVEH TREAAAQFLERHGYKNMTAVSFDRHQNICNMTFAKQEKDTVIYPEKLVVNVALDDGQILG LQGTDFVFANRNHKNIDQEPKLSKEEARSHLSPQLKVTRHTKALIVNDLNQEVLCHEFIG SLNGQTYRIYVNGEDGTEEKVETIRKEDAEQAKQQPVTQGT >gi|333605800|gb|AFDH01000075.1| GENE 9 7557 - 7712 119 51 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|167463602|ref|ZP_02328691.1| ## NR: gi|167463602|ref|ZP_02328691.1| hypothetical protein Plarl_13784 [Paenibacillus larvae subsp. larvae BRL-230010] # 3 48 4 49 52 63 69.0 6e-09 MTVNRVKVTIRCRQCGERFILKGRRDKGRIETGFKRCICDNEHDLEVETED >gi|333605800|gb|AFDH01000075.1| GENE 10 7778 - 8476 842 232 aa, chain - ## HITS:1 COG:BS_ypdC KEGG:ns NR:ns ## COG: BS_ypdC COG2339 # Protein_GI_number: 16079351 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Bacillus subtilis # 3 222 1 218 218 192 50.0 3e-49 MNVFSVLMAAVAPGISLLAYFYLKDRYETEPIHLVGKLFLCGVLLVIPAMVLQNSFMQEI GGDNHFTFAFFISGGLEEFLKWFVVYHLIYRHDSFDEPYDGIVYAVAVSLGFATLENILY AFANGISMSSLLMRALLPVSGHALFGVMMGYYLGKAKFMRSHERKYLLASLFLPILWHGA FDYILLVAANNWIWFMLPFMTLLWIRTLWKVDRANDRSPLRIVRGEEEFKIG >gi|333605800|gb|AFDH01000075.1| GENE 11 8519 - 9769 1316 416 aa, chain - ## HITS:1 COG:BH1622 KEGG:ns NR:ns ## COG: BH1622 COG0334 # Protein_GI_number: 15614185 # Func_class: E Amino acid transport and metabolism # Function: Glutamate dehydrogenase/leucine dehydrogenase # Organism: Bacillus halodurans # 8 416 13 421 421 694 80.0 0 MANTENLNVLESTQTIIEDALKKLGYSDEMYELLKEPLRVLTVRIPIRMDDGKVKVFTGY RAQHNDAVGPTKGGVRFHPGVTEDEVKALSIWMSLKCGIVDLPYGGGKGGIICDPRSMSF RELEVLSRGYVRAISQLVGPNKDIPAPDVMTNSQIMAWMLDEYSRIREFDSPGFITGKPI VLGGSHGRETATAKGVTIMINKALEKRGIPLQGARVIVQGFGNAGSYLSKFMHEAGAKVV GIADVNGALYNPDGLDIEYLLDRRDSFGTVTNLFPNVMPSTEILEQDCDILVPAAIENQI TQENAHRIKAGIVVEAANGPTTLEATKILTERGVLLVPDVLASAGGVVVSYFEWVQNNQG YYWTEEEVHSKLQEVMEKGFENVYTIHKTRGIDMRLAAYMTGVRKMAEAARFRGWV >gi|333605800|gb|AFDH01000075.1| GENE 12 9958 - 10563 458 201 aa, chain - ## HITS:1 COG:BH1620 KEGG:ns NR:ns ## COG: BH1620 COG4862 # Protein_GI_number: 15614183 # Func_class: O Posttranslational modification, protein turnover, chaperones; T Signal transduction mechanisms; N Cell motility # Function: Negative regulator of genetic competence, sporulation and motility # Organism: Bacillus halodurans # 1 200 1 196 201 166 45.0 2e-41 MKIERLSPDKIRIFLTFDDLTERGIQKDDMWREIPKVHDLFSDMMDQAYSELGFEPAGPL AVEVFALPAQGMVVIVTRGSMDLSLQADLLDDHDDEEVYEMEVTLEQSDIVSYAFRDFED LLRASKVVNPMLTDGGALYTYKNKWILQLEPTELPEGKFQTLIAVLSEYGDATNVTKAVL EEYGKAVIEANAVQELCRHFA >gi|333605800|gb|AFDH01000075.1| GENE 13 10814 - 11170 319 118 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKLGSFLIGSVAGAALAMYAGKRIKSMRSAMFSSESSGIGSSLNDVIGQTKNFVSGSGRK ESSKQQSNQSSSSSHGSGGSHSSDGKEALENLIAKDSQVKAAVDEILVKNAASSQATH >gi|333605800|gb|AFDH01000075.1| GENE 14 11395 - 11625 272 76 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_2374 NR:ns ## KEGG: Pjdr2_2374 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 10 73 15 75 76 62 45.0 8e-09 MEGNKTQGIEYEQPILAESDLVNDNEEESHYLPPRSSVHPSERAKVTRWFYRLLLFLFIL LVMGLGWWGIRYTSGT >gi|333605800|gb|AFDH01000075.1| GENE 15 11632 - 12243 563 203 aa, chain - ## HITS:1 COG:BH1608 KEGG:ns NR:ns ## COG: BH1608 COG1266 # Protein_GI_number: 15614171 # Func_class: R General function prediction only # Function: Predicted metal-dependent membrane protease # Organism: Bacillus halodurans # 22 198 8 186 198 125 40.0 6e-29 MRKWNWKWKDLKNIRIKTDIRVDDLNDRMLLINLYGTQAILLVIGVIMLFVQGADWRSLF SFAPGWSIVLWGGGIALAVLAADLIVSKYVPEEVTDDGGVNKRIFGRRPLWHIALICVLV SICEELLFRAGLQHYLGPYWTSIVFAAIHIRYLQHWLMTGLVFCISYGIGWIFIHTGSLW TAIFAHFMIDFISGCILRYGKEE >gi|333605800|gb|AFDH01000075.1| GENE 16 12507 - 12833 331 108 aa, chain - ## HITS:1 COG:SA1578 KEGG:ns NR:ns ## COG: SA1578 COG0607 # Protein_GI_number: 15927334 # Func_class: P Inorganic ion transport and metabolism # Function: Rhodanese-related sulfurtransferase # Organism: Staphylococcus aureus N315 # 1 98 1 92 103 66 43.0 9e-12 MKHIAPEKFLELLDKPEMLKGIRIVDVREPYEWDHYHLNEPELIPMNTIPERLDELGGDA DLYVLCAHGVRSEMVCGYLERNGFDPDKLVNVEGGMAALAMLRGFAYD >gi|333605800|gb|AFDH01000075.1| GENE 17 13343 - 14926 1889 527 aa, chain + ## HITS:1 COG:BH1602 KEGG:ns NR:ns ## COG: BH1602 COG0111 # Protein_GI_number: 15614165 # Func_class: H Coenzyme transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoglycerate dehydrogenase and related dehydrogenases # Organism: Bacillus halodurans # 1 519 17 532 540 482 49.0 1e-136 MFKVLVSDPISDMGIQMLYDASDVEVDKKPGLSEDELVTIIGEYDALLVRSQTKVTPRIM EAAPKLKVIGRAGVGVDNIDLQAATKHGIVVINAPDGNTIATCEHTFAMMMSVARSIPQA YKKTVSGEWDRKSFVGVELRNKTLGIIGMGRIGSEVAKRAKVFGMNVIGYDPFLTEDRAE KIGVKLGTVNDIAAAADFITVHTPLTNETRHIVGPAQFAIMKKGVRIINCARGGIVDENA LVAAIENGTVAGAAFDVFEQEPPQASHPFLNNPSIIVTPHLGASTIEAQENVAIDVSEEL LHILRNEPFKNAVNMPPVPATVMSKLQPYFNLGEKLGLIAGQLTEGPVNEIVVSYSGDLA DVDTNPLTRYIVKGVFTQHLEGINLVNAMHMAKSRDINITTQQSSTTGTFTNLVTITVKS KQGDRTLAGTLLAGYGERIVRIDQYPVDFAPEGSLLLISHNDKPGIIGRVGTLLGSNDVN IATMQVGRTVIGGSAIMVLTIDKTAPKEVIAELEKQPEIVNVRQLGI >gi|333605800|gb|AFDH01000075.1| GENE 18 15230 - 17098 2045 622 aa, chain - ## HITS:1 COG:BH1581 KEGG:ns NR:ns ## COG: BH1581 COG0642 # Protein_GI_number: 15614144 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Bacillus halodurans # 5 618 4 588 594 461 43.0 1e-129 MFSLRSVVGKLWLTIIGLVAVILITLGVFLVQSLEQYFSQSEDQVHNLKQLAGDYSNGAA LHLQDEEFYRMANQLLELQDARMIALDKDLKELNPSVEGKNQELLRFKAADFFSEAELKS VLNGQMLEKRIPYNKQGKINQRNDYIAVAVPLYHTPDGGVKDTQGAIVLYQSLKSLEATQ WDVFRLFVIVSIIGFLMTTVFAFFLFYRITRPLLQLKDAAGRISRGEYGTKVPILSSDEI GELAKSFNVMGEELQENVKALRHEKENLSSVLRSMTDAVMTFDAGGKVIVTNPQGDKIIQ EWEELSWNPDGPPVNGGVPAALPLPLDRHIPAPLQPMFHQVVTEAREQTDKLHVENEVWS VAMTPLHSRDGVRGAVAVLRDVTEEFRLDKLRKDFVANVSHELRTPLSMVQGYSEALLDD IAGSPEERKELAQVIYDEALRMGRLVRDLLDLARMEAGHLEMNFNRTDIGGLVKRMHRKF TVLAREKDIRLNFELPQGELVCTADEDRLEQVLTNLLDNAFRHTPGGKTITIKAEPYAYK SSPGCKLEVTDEGQGIPAEDVPYVFERFYKADKARTRGATGGTGLGLAIVKNIVDAHQGT ITMRSKLGQGTTFTIVLPCKEC >gi|333605800|gb|AFDH01000075.1| GENE 19 17100 - 17813 788 237 aa, chain - ## HITS:1 COG:BH1580 KEGG:ns NR:ns ## COG: BH1580 COG0745 # Protein_GI_number: 15614143 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Bacillus halodurans # 1 237 1 237 238 343 71.0 2e-94 MEQRLNILVVDDEERIRRLLRMYLEKEGYGIEEAEDGETALTLATERDFDLILLDLMLPG IDGTEVCARLRQVKSTPVIMLTAKGEETNRVHGFEVGADDYVVKPFSPREVIYRVKAILR RSSATAFLSKDANSSNNIVFPHLVIEHDAHRVTAGGQEVALTPKEYELLHYLAVSPDKVF SREELLKDVWNYEFFGDLRTVDTHVKRLREKLNKVSPEAAAMITTVWGVGYKLEVPK >gi|333605800|gb|AFDH01000075.1| GENE 20 17868 - 19127 1339 419 aa, chain - ## HITS:1 COG:BH1579 KEGG:ns NR:ns ## COG: BH1579 COG0755 # Protein_GI_number: 15614142 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in cytochrome c biogenesis, permease component # Organism: Bacillus halodurans # 6 418 5 397 399 361 50.0 1e-99 MNWLNFSGNALLVSFVIYCVAFLVFVLSIAGKTWSNRDPEVHARKWGRAAYGLSVLGLVS QLLYFFTRWYGGGHIPTSNMFEFMTMLGMMIMIAFIIVYAIYRTPVLGVFALPVVVLIIA YAAVFPNEVQPLIPALQSYWLKIHVTTAAAGEAFFAVGFAAGLMYLIRTVNFQGKTASDR KEQRGVEFTLLIIFMLIAFIASVFTFNAAGYEAKFVKEQIVAKEDGTQQKVSQTVTYVLP PIVAPYQTTLESMDTFLGMDKPLFTAPSWMSGENAGRKFNTVIWTVLIGVLLYTLLRLIL RKPIGQAISPIMKGMDPEDLDEIGYRSIAIGYPIFTLGALIFAMIWAHKAWGRFWGWDPK EVWALIVWLFYAVFLHLRLSRGWQGKRSAWLAVIGFIVVMFTLVGVNLVIAGLHSYSGV >gi|333605800|gb|AFDH01000075.1| GENE 21 19124 - 20791 1700 555 aa, chain - ## HITS:1 COG:BS_resB KEGG:ns NR:ns ## COG: BS_resB COG1333 # Protein_GI_number: 16079371 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ResB protein required for cytochrome c biosynthesis # Organism: Bacillus subtilis # 3 553 2 542 542 430 43.0 1e-120 MFQNTKCDCGHQNHVGTLLCESCGKPLTEEAFSNEPLEMKYDGVARRSQRENPSWLDRVW NFFSSVKVAVTIIVLTLIGSSLGTIYPQESNFIQVDPATYYKNTYGTLGHVYYLLGLSHT YESWWFKLLILMIGASLVICSLDRVLPLYRALSKQKIQKHHSFLLRQKVSYDGRIPEGIS EEEWTDQMARQLRKKHYRVHTDGAALLAEKYRFSRWGPYVLHIGLIIFLLAVLMRSFPGW QMDEYMGLREGEIKKIPDTSLYIKNEKFTIDFYKPEEMTEEFKKRERAVPKIYETEAVIY TCKADCDTPGKKPELQEVHRQKIIVNEPLDYKGLLAFQYDYKEAPLLISVKPTLTNKQTG ESYGSFELPMKDPQDTYQAGPYKLSLKGYFPEFGLDDKGEPITKSNEAKAPAFIFQITGP GLSPNGEPYIYFPRQIDKQEFRQDEINGSIGAKFDLSVGSMENVTFSSYTSYLNIRTDRA LPYIWIGAAIGMIGLIMGFYWQHRRVWLRIDDGRLVLGAHTNKNWFGVRKEVAASLNKTG ITVDQKTLEKGGKAT >gi|333605800|gb|AFDH01000075.1| GENE 22 20827 - 21372 555 181 aa, chain - ## HITS:1 COG:BH1577 KEGG:ns NR:ns ## COG: BH1577 COG0526 # Protein_GI_number: 15614140 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Bacillus halodurans # 2 171 3 170 176 137 35.0 1e-32 MKKNKKWVQIFILGLVLIIGVFTIVNNLTSADDKKYPVEGSKAPDFTLTGLDNKSYKLSD YKGKGVLINFWGTFCPPCKKEMPALQKQYDIWKDKNVEFLEVNLDTSRVTVQNFVDQYNL NLPILLDNEENVRKQYGVVEYPTTFFVKPDGTVMKIHKGEMDEAFIADTLKKLTAGTGGG Q >gi|333605800|gb|AFDH01000075.1| GENE 23 21434 - 22180 733 248 aa, chain - ## HITS:1 COG:BH1576 KEGG:ns NR:ns ## COG: BH1576 COG1187 # Protein_GI_number: 15614139 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases # Organism: Bacillus halodurans # 1 239 1 238 242 241 55.0 9e-64 MERLQKVLAEAGIASRRKSEELILAGRVSVNEEVVTQLGVKVNPAEDMIMVDGRAIKQQT KVYVMLNKPKGVITSAADPKGRKVVTDYLPGIKERVYPVGRLDYDTEGLLILTNDGEFAN LMMHPRHHVAKTYHATVKGVVHGSVLDRLRAGIELEDGMTAPAEVEYVDVRPEQNESVIS ITIYEGRNRQVRRMFDAVSFPVVKLRRVQYGPLLLAGLPRAKYRVLRNDEINSLRDAALQ SHKIQKGR >gi|333605800|gb|AFDH01000075.1| GENE 24 22482 - 23018 630 178 aa, chain - ## HITS:1 COG:BH1575 KEGG:ns NR:ns ## COG: BH1575 COG0700 # Protein_GI_number: 15614138 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Bacillus halodurans # 3 178 2 177 178 190 60.0 1e-48 MYEWVNVLSAWAIPVLIVFIPLYAAYRKVPVYESFTDGAKEGFDTAVKIIPHLVGMMVAI SVFRASGALELTLGWLKPLFQALGVPSEVLPLAVLRPITGAGSLAFTTDLIAQFGPDSLV GRIASTVQGSTDTTLYVITVYFGAIGIRKAGYALKVGLISDVVGFIASIIICLLVFAT >gi|333605800|gb|AFDH01000075.1| GENE 25 23026 - 23625 730 199 aa, chain - ## HITS:1 COG:BH1574 KEGG:ns NR:ns ## COG: BH1574 COG2715 # Protein_GI_number: 15614137 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein, required for spore maturation in B.subtilis. # Organism: Bacillus halodurans # 1 189 1 191 197 232 62.0 3e-61 MVNWIWLFFIVTGFAVAAVQGNVEAVTQAAFDGAKSGVTVCFGLISVLVFWLGMMRIAED AGLLSKLAVLLRPVVRFLFPSIPKDHPALGYIMSNMSANILGLGNAATPMGIKAMQELQK LNPHKDTASPAMCTLLALNTASITLIPTTLIAIRMNYNSMNPSEIVGTTLLATIVSTAAA IIVDRWYRRRLPANPAVKG >gi|333605800|gb|AFDH01000075.1| GENE 26 23653 - 24828 1004 391 aa, chain - ## HITS:1 COG:BS_dacB KEGG:ns NR:ns ## COG: BS_dacB COG1686 # Protein_GI_number: 16079376 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanyl-D-alanine carboxypeptidase # Organism: Bacillus subtilis # 13 344 9 349 382 267 44.0 3e-71 MSKRMWVSGMLAFLCMLNLLGTAALAAEPPAIGTNAEAAALVDVKSGRVLYSKRGDRPMR IASLTKIMTAIVAIEESKLTDIVKVSTRAAGKEGSSLYLKAGQEMSLKHMLYGLMLRSGN DAATAIAEHVGGSVEGFAVMMNRKAEQIGLDHSNFTNPSGLDESADHYSSADDLAKLAAY SLKNPTFQEIVQTKMIKVPNPNESWEYTWFNKNKMLGLFDGADGVKTGYTKLAKRCLVSS ATRNGQQLVVVTLNDGDDWADHTRLLGWGFEHYPLVPLLQKGQAVDGTPYVAERDFSYPL LSVEKERVTAEPEPFPPDSLDSRLGEKGALRLKLGDRLIGTVPLVDPASPRLKAADKAAF GFQATDADMSVWNAWSVTLRKAIRAMFSTGV >gi|333605800|gb|AFDH01000075.1| GENE 27 25182 - 26489 1522 435 aa, chain + ## HITS:1 COG:BH1231 KEGG:ns NR:ns ## COG: BH1231 COG1055 # Protein_GI_number: 15613794 # Func_class: P Inorganic ion transport and metabolism # Function: Na+/H+ antiporter NhaD and related arsenite permeases # Organism: Bacillus halodurans # 3 434 2 428 428 364 49.0 1e-100 MTQVWIALIVFLATYAVIISEKKNRAVVALLGAAIMVICGIVDVHKVYTEYIEWGTIALL VGMMILVGITNKTGVFQYVAVRAAKMAKGDPMRILIFLSLLTAAGSAMLDNVTTVLLVVP VTLSITRMLNINPVPFLISEIIASNIGGTATLIGDPPNIMIGSANPHLTFNAFLSNLAPV TVLILIATLAMLRVIYRKQLKTSPEHKEKLMKLDEKAYIQDPVLMKKSLIILGLTIIGFV LHSVIHVEAAVVAITGAVLLMLFGLKEQEVEEAFDSVEWVTIFFFAGLFALVGALQEVGI IKSLALQVLNVTGGDVRLAAPLILWGSGIASATIDNIPFVATMIPLIKDMAVNMQLPADS MEINTLWWSLALGACLGGNGTLIGASANVIVAGIAAKEGKGFSYLEFLKIGAPITLVSLL ISQLYLYFRYMIFLP >gi|333605800|gb|AFDH01000075.1| GENE 28 26580 - 27056 661 158 aa, chain - ## HITS:1 COG:BH3195 KEGG:ns NR:ns ## COG: BH3195 COG3874 # Protein_GI_number: 15615757 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus halodurans # 1 140 1 132 147 159 65.0 2e-39 MTDHPIQGLMKTAMENIKQMVDVNTIVGDPVETPDGSVIMPISKVGFGFAAGGSEFTTET LPDVGSRGGLEKAAVEMPFGGGSGGGVSITPIAFLVVGKHGVKIVPLDNQTHLIERLIDS APQIVDRVQSMIKQGGSASGLGGAGTSNINIEADTIKM >gi|333605800|gb|AFDH01000075.1| GENE 29 27182 - 27916 679 244 aa, chain - ## HITS:1 COG:no KEGG:PPE_02790 NR:ns ## KEGG: PPE_02790 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 7 227 7 226 237 113 31.0 7e-24 MLIGGIIIAIVLVLVLAAVLAMLSSVQFTFYWNRVGENDEMYVQVRALHGWIKYRFNVPA IQFNNLVDGLTLKINQADQNKMDITKKSKSKIDKEYIQAFYREGKDLLRHTQGLNAWFKR TMSAFRCTELKWSTGIGAGDAVQTAILSGTVWTLKSAAVGLLTKYVPLSTVPKLAVNPQY NRTAFQIEFVCVIQAKAAAIGLSGCRLIYRIIRTPGGLRAWFRLLRQVIPGDRTRAKRPE PAAT >gi|333605800|gb|AFDH01000075.1| GENE 30 28063 - 28893 913 276 aa, chain - ## HITS:1 COG:BS_ypuH KEGG:ns NR:ns ## COG: BS_ypuH COG1386 # Protein_GI_number: 16079378 # Func_class: K Transcription # Function: Predicted transcriptional regulator containing the HTH domain # Organism: Bacillus subtilis # 1 201 3 196 197 166 47.0 5e-41 MDFQQMKSIIEGLLFVAGDEGLDKKQLADILETDAHIVTELVEELQEDLRSGGRGIQITR VAGAYQMTTVPEHAPYFERLAYSPSRSSLSQAALETLSIIAYKQPITRVEIEEIRGVKSE RALHTLMAKELIVETGRAEAIGRPILYGTSKPFLEYFGLSSIDDLPESPAFVGDFDLEEE TKLLFDKLNGDETDQLTFEDLGRDLLDGLDAKNAGLSVDNGEDLTLLENDGEKPASIPER YEFTSSSPNDWAFPEVPELPELPEGLAKDPDVPDKE >gi|333605800|gb|AFDH01000075.1| GENE 31 28862 - 29644 906 260 aa, chain - ## HITS:1 COG:lin2065 KEGG:ns NR:ns ## COG: lin2065 COG1354 # Protein_GI_number: 16801131 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 250 2 249 249 182 50.0 4e-46 MKMLYKLEAFEGPLDLLLHLIDKSEVDIYNIPIKDITEQYMEYVQAMHELELEVTSEFLV MAATLLAIKSKMLLPKPPVLDLDFDYYEEDDFDPRAELVQKLIEYRKYKAVADLLRDKEV ERSLVFTREPEDLTPYVPQVQENPVKGLDVNDLMLAFQRTLRKMVHRNQVTKIRRDEISV KDRIVDLVELLRNKGGRLLFSKLFEKECSREEIVVTFLALLELMKMKKIQCFQHRLFEDI VIQAKEGEMTDGLSTDEIDY >gi|333605800|gb|AFDH01000075.1| GENE 32 29742 - 30212 630 156 aa, chain - ## HITS:1 COG:BH1557 KEGG:ns NR:ns ## COG: BH1557 COG0054 # Protein_GI_number: 15614120 # Func_class: H Coenzyme transport and metabolism # Function: Riboflavin synthase beta-chain # Organism: Bacillus halodurans # 1 154 1 154 156 235 76.0 2e-62 MVKNYEGHLISQGQRYGIVVGRFNEFITSKLLGGALDALKRHGVEDTEVEVAWVPGAFEI PLIAQKLAETGKYDAVITLGTVIRGSTPHFDYVCNEVAKGVSAISLKTGVPVIFGVLTTD SIEQAVERAGTKAGNKGWDAAVTAIEMANLTKQLQG >gi|333605800|gb|AFDH01000075.1| GENE 33 30279 - 31502 1300 407 aa, chain - ## HITS:1 COG:BH1556_2 KEGG:ns NR:ns ## COG: BH1556_2 COG0807 # Protein_GI_number: 15614119 # Func_class: H Coenzyme transport and metabolism # Function: GTP cyclohydrolase II # Organism: Bacillus halodurans # 211 404 1 194 197 304 76.0 2e-82 MTERETYSFHSIEEAVSDLAAGKVIIVVDDEDRENEGDFIALADKTTPEVINFMIKEGRG LVCAPITEERAQELDLPPMVSRNTDYHGTAFTVSVDHAETTTGISAHERSRTIRALIDPE AKPLHFRRPGHIFPLIAKKGGVLRRAGHTEAAVDLARMSGSYPAAVICEVIKEDGTMARV PDLMEVARIHGLKIITIKDLIHYRSEKENLVKREVEAKLPTDFGTFQAIAYTNQLDQKEH VALVKGNIDGSVPTLVRVHSECLTGDVFHSHRCDCGPQLAAALQQINDEGAGVLLYMRQE GRGIGLINKLKAYVLQEEGLDTVEANVKLGFAPDLRDYGVGAQILKDLGIRQIRLLTNNP RKIKGLEGYGLEVVERVAIQMPHNEDNARYLHTKQEKLGHLLQFDPN >gi|333605800|gb|AFDH01000075.1| GENE 34 31542 - 32210 763 222 aa, chain - ## HITS:1 COG:BH1555 KEGG:ns NR:ns ## COG: BH1555 COG0307 # Protein_GI_number: 15614118 # Func_class: H Coenzyme transport and metabolism # Function: Riboflavin synthase alpha chain # Organism: Bacillus halodurans # 1 221 1 214 215 228 52.0 6e-60 MFTGLIEEIGVMRRIHKQGQAMVLTLGARLVLDDVKLGDSIAVNGVCLTVVAYDKETFSV DVMPETYRKTNLASLQTGARVNLERAMPANGRFGGHLVQGHVDGTARIRARTPEENAVVY RLEPDDDAVLRYMIAGGSITIDGISLTLIDVTDSTFAVSIIPHTLAQTILQDKQPGDSVN IECDVLGKYIEKLLRTGPGGKTHSRGGQGGLTEKFLAENGFF >gi|333605800|gb|AFDH01000075.1| GENE 35 32195 - 33334 1027 379 aa, chain - ## HITS:1 COG:BS_ribG_1 KEGG:ns NR:ns ## COG: BS_ribG_1 COG0117 # Protein_GI_number: 16079385 # Func_class: H Coenzyme transport and metabolism # Function: Pyrimidine deaminase # Organism: Bacillus subtilis # 7 146 2 141 142 182 65.0 6e-46 MLQPLQDESYMRLALQMAQAALGQTGINPVVGCVVVKDGRIVGMGAHLKRGEGHAEVHAL KMAGREAEGATAYVTLEPCSHYGKTPPCSDRLIESGIRRVVVAAVDPNPLVAGSGIARLR SRGIDVEAGLLADEANALNEAFGKFIVTRLPFVTMKSASTLDGKIAAKTGDSKWITGAPA RELVHAMRHRHAAIMVGIGTVLADDPELTTRLSVPALHPLRIVVDSQLRTPLSARVLRQQ DERPTLILTTADADPAKREALEALGAEVLACGSGPHVDLPLAMRLLGEREVPSVLLEGGG RLSGAMLENRLVDKAVLFFAPKWIGGGPEAPDNAAFAGFGRMSEAIRLARMTVETVGEDV CLTGYPQYAEKEGSSCLPD >gi|333605800|gb|AFDH01000075.1| GENE 36 33173 - 33496 152 107 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MALSPLQMGAHADDAAVFDDDAADDGIDARLSERRLGHLQRQAHVTFVLQRLKHERSPFR EGNWLFPLFCLGSFPAWFVLGLVSPASAKMLNLKKPLSVSDKGGFME >gi|333605800|gb|AFDH01000075.1| GENE 37 34319 - 34582 116 87 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKRNTDFSRKGLKASKNTAAVDFANLYHGHSDGIPVIVRGRVHHEGLAACGWDKARLWDE LGKAGVDSLLDVAYAEIRRDALILKSP >gi|333605800|gb|AFDH01000075.1| GENE 38 34631 - 35062 575 143 aa, chain - ## HITS:1 COG:MTH1338 KEGG:ns NR:ns ## COG: MTH1338 COG0652 # Protein_GI_number: 15679338 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family # Organism: Methanothermobacter thermautotrophicus # 13 142 11 140 141 191 67.0 4e-49 MAKQAKITMAGGGEVLIDLFEKDAPNTVANFEKLANSGFYNGLNFHRVIPGFVAQGGCPQ GTGTGGPGYTIDCEINPNKHERGTLAMAHAGRNTGGSQFYICYQPQPHLDGQHTVFGKVT KGMEYVDAFKGRDTMEKVEIVEV >gi|333605800|gb|AFDH01000075.1| GENE 39 35340 - 36671 1315 443 aa, chain - ## HITS:1 COG:BS_lysA KEGG:ns NR:ns ## COG: BS_lysA COG0019 # Protein_GI_number: 16079395 # Func_class: E Amino acid transport and metabolism # Function: Diaminopimelate decarboxylase # Organism: Bacillus subtilis # 1 431 1 431 439 557 62.0 1e-158 MHLHGTSRVNALGHLEVGGVDTTELAARYGTPLYVVDEALVRRRCREFVDAFQASGLKFQ VAYASKAFCVMAMCRIVAEEGLSLDVVSDGELFTALQAGFPPERIHFHGNNKTPAEIEMA LDAGIGCFVVDNFTELRMLDAIAGSKGKRVPILLRITPGVEAHTHEYISTGQIDSKFGFD LGNGAAFEAVKESAAANHLLLLGVHSHIGSQIFEVEGFRVAAEKVAQFASQVRDELNVVF SVINLGGGFGIRYVDGDTPLPMSTYVEAIAEAVKTRFEAVSYPMPEIWIEPGRSIVGDAG TTLYTVGTNKDIPGVRKYVSVDGGMTDNPRPALYQSQYEAMLANRASEPSQETVSIAGKC CESGDMLIWDVELPLVETGDILAVASTGAYNYSMASNYNRIRRPAVVFVKDGMADMAVKR ETYEDLVRNDVVPERMKQIQPVR >gi|333605800|gb|AFDH01000075.1| GENE 40 36814 - 39054 1492 746 aa, chain - ## HITS:1 COG:no KEGG:PPSC2_c3177 NR:ns ## KEGG: PPSC2_c3177 # Name: not_defined # Def: GerA spore germination protein # Organism: P.polymyxa_SC2 # Pathway: not_defined # 227 743 29 548 564 620 55.0 1e-176 MKKLIGKMMVKDKERRHGGTGGISGSGADADDRSKAPALQIDEEGNVFAAPEMEENTPSG TELNEGAGDTGHEDQLKSPANAPEETPEKEAPGRERQEPAQGTGKSDESRRESGDGGTAA GLRAGTREDQSGGAVRSGKGSEARKGFRAGPRSREESPGRESRSKEQDRSGGMPEEEAFG IKKLLRDGNKGPIQASFSRKRSAADQGGEEQPANAEGHGTAADVRRSEGTGQQKQASGAR GDKQGQKGKGPSNGDASKPVDDPIPLSMQEVKDMLEERSGLGTSFDLVLREMVFGSIRVG FYYVNGLAKDQVLTMVLDRLSYADHAAMENNPAESLKEYLIPHIQVSPYQTMKEVIGQVM TGATGVFIEGEKTALVVDAKNFPVRSTEEPDLERVVRGSRDGFVETLMTNVALVRRRVRD PKLRVEIMQVGKRTSTDICIGYIDDIANPKLVEAIRDKVKNVDLDGIPLAEKQLEEAIVA KGWNPYPLVRYTERPDVASAHLLEGHVILMSDTSPSVMIMPSTFFHHLQHAEEYRQLPII GSYLRWVRFLGILASLFLLPLWYLMVLEPGLKPTGLEFIGPQNPGKIPVLIQFLLAELGI DLMRMASVHTPTPLSVAMGLVAAILIGDIAVKTGLFTNEIIFYISIATIGMFATPSYELS LANRIVRLILLFSVALFKVPGFVIATTVWLIFLSLQRSHTAPYMWPFLPFNAMGLLNILF RLPVLTHKTRLSITRSKDGTRQPGPE >gi|333605800|gb|AFDH01000075.1| GENE 41 39073 - 39492 564 139 aa, chain - ## HITS:1 COG:no KEGG:PPE_02803 NR:ns ## KEGG: PPE_02803 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 11 139 10 138 140 122 55.0 7e-27 MITLLGWSAAVVIGLAGGIAVGSGMVAFLLVLDIIPRLLQVSRAQHRIRSCEIAVIAGSL VFTLMDFFNWKLSAPVWWTGVFGLFAGAFIGMLSAALTEIINVLPVLAKRVGMTSYMVWL LTAMIAGKVLGSLFEWFIY >gi|333605800|gb|AFDH01000075.1| GENE 42 39489 - 40031 602 180 aa, chain - ## HITS:1 COG:no KEGG:PPE_02804 NR:ns ## KEGG: PPE_02804 # Name: not_defined # Def: stage V sporulation protein AA # Organism: P.polymyxa # Pathway: not_defined # 1 173 37 209 217 203 56.0 2e-51 MIVEPAYESTLRGLVLVQPKVKDGNRILIDMLSIVAAVKNVHPNLQIEHFGEPHTLVEID SDTRKPNLLFLTAVWVLLFIGSGLTIMNFHADVSMLEVHQRVYELVTGKKTEHPLFLQIP YSLGIGIGMAVFFNHFFKKKFNEEPSPLEVEMFTYQENIDRYTIAEEYQSLNREKRESSP >gi|333605800|gb|AFDH01000075.1| GENE 43 40124 - 40213 62 29 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MQSLGTFPWMILPNAPHTTGKRMFWGDEG >gi|333605800|gb|AFDH01000075.1| GENE 44 40318 - 40527 337 69 aa, chain + ## HITS:1 COG:BH3345 KEGG:ns NR:ns ## COG: BH3345 COG2155 # Protein_GI_number: 15615907 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus halodurans # 1 69 4 68 75 69 50.0 2e-12 MSRIALTLIIVGALNWLLVGIFEWDLVSAIFGGEVHRTSSAFSRIIYTLVGLAGIYSLSF FFRDDATVR >gi|333605800|gb|AFDH01000075.1| GENE 45 40660 - 41415 927 251 aa, chain - ## HITS:1 COG:BH1538 KEGG:ns NR:ns ## COG: BH1538 COG1191 # Protein_GI_number: 15614101 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit # Organism: Bacillus halodurans # 1 251 1 252 252 335 71.0 5e-92 MDVDLKGSSHSFLDDSEVKRLIALSQSGDSLARERLVNSNIRLVWSVVQRFLNRGYEAED LFQIGCIGLLKSVDKFDLSYDVKFSTYAVPMIIGEIQRFLRDDGTLKVSRSLKELASKIR KTKDELSKGMNRLPTIKEVADALGITPEEVVFAQEASKPLSSIHETVFENDGDPITLMDQ IADETQDKWFEKLALNEAIGALNERERLIVYLRYFRDQTQSEVASRLGISQVQVSRLEKK ILQSIKDQIAQ >gi|333605800|gb|AFDH01000075.1| GENE 46 41428 - 41874 496 148 aa, chain - ## HITS:1 COG:BH1537 KEGG:ns NR:ns ## COG: BH1537 COG2172 # Protein_GI_number: 15614100 # Func_class: T Signal transduction mechanisms # Function: Anti-sigma regulatory factor (Ser/Thr protein kinase) # Organism: Bacillus halodurans # 5 148 3 146 146 170 61.0 1e-42 MSESNFMKLQFASKSENEAFARVAVASFISQLDPTMNELTDIKTVISEAVTNCIIHGYDN KPDGVVTIVTEIVDDEVYITVEDNGAGIEDLEEAKQPLYTSKPELERSGMGFTIMENFMD EVDVVTEVGTGTRIRMKKRIESKKALVN >gi|333605800|gb|AFDH01000075.1| GENE 47 41871 - 42224 412 117 aa, chain - ## HITS:1 COG:BH1536 KEGG:ns NR:ns ## COG: BH1536 COG1366 # Protein_GI_number: 15614099 # Func_class: T Signal transduction mechanisms # Function: Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) # Organism: Bacillus halodurans # 1 116 1 116 116 127 56.0 5e-30 MSLQIEFEHRSKALVVRLKGELDHHTADVVKTRMEDAIFRQDTKHLILSLKDLSFMDSSG LGVILGRYKQITGKGGRMVVCDISPEVYRLFELSGMFKIVTIEDNERSAISSLEVAL >gi|333605800|gb|AFDH01000075.1| GENE 48 42345 - 43520 1280 391 aa, chain - ## HITS:1 COG:BH1535 KEGG:ns NR:ns ## COG: BH1535 COG1686 # Protein_GI_number: 15614098 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanyl-D-alanine carboxypeptidase # Organism: Bacillus halodurans # 8 390 7 385 387 399 51.0 1e-111 MWKKMSCAVLALSLLLSAAGPAVWAKEEKPQQVDLAPNAQSAVLMDADSGEIIVNKNMDT KLPPASITKIMTMLLIMEAVDSGKIKMTDKVSTSEYAASMGGSQIFLEPGEEMSVEEMLK GIAMASGNDASVAMAEKLAGSEENFVAMMNERAKQLGMNNTHFSNCNGLPTENHYTSAHD IAIMSRELLKHTGITKFTGNYQDHLRKDSAKPFWLVNTNKLVRFYSGADGLKTGYTSEAK FCLSATAVRDGFRVIAVVLGEPNTKTRNAEVTKLFDYAFAQYSNFPIFKAGDALGELKIS KGDVASVPLTATRSYSILMKKGEGKEGIRHELQLSQDLKPPIAKGQPIGKIVVYKNNEVL TEYPIESPADVKKAGWWTLMKRSARSLFGGE >gi|333605800|gb|AFDH01000075.1| GENE 49 43715 - 46420 2618 901 aa, chain - ## HITS:1 COG:mll2385_3 KEGG:ns NR:ns ## COG: mll2385_3 COG0642 # Protein_GI_number: 13472176 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Mesorhizobium loti # 431 733 1 307 354 257 50.0 7e-68 MRARRFSIRWKIMSGYLLILVCLAASIFAVNGRIVSLQKEIDFVTEHDIQVHDLTSEVEK QLLDMETGQRGYVITGDDRYLEPYEKAQANWLTDYDTLHGLVADNPSQQKRLEELRSVIE KWIAEAGQPVIAWKKAGNTPQIQQYFQEDPGKKYMDRIRVMIDTFRSTETKLTLDRVANL DERNKDMRSALYLMMLGVAIVAVATAILISRSIQGTISKVIRAINHLASSDGDLSERIEV KSRDEIRDLGDATNRLLDNVQRETEEKTQVAELTTALQGFTDTGALSDMFVRKAAELFNA PYGVVYMLQTVDGEYGLHRMAAYASDGENEERSRMFKPGEGLVGQCAEENRMLAVDHLPE NYVTVRSGLGEAAPRHILIAPASFKGSVTAVVEFASFEPFTASQRQVLRELLTSFGIILN SVGSRMEVERLLQESRVMAEELQVQSEELRTQTEEMQVTNEELEAQYRVSEQKTLELEQA SLELQAKAEQVQLASQYKSEFLANMSHELRTPLNSMLLLSQFLSENQNNTLSEEELDYVE LIHKAGNDLLALINDVLDLSKVEAGKLEVNYEPFNLTELPDKMEHLFGKMLKDKDVAFKR TMEPGLPEIIQTDGQRLEQIVKNLLSNAVKFTHYGEVTLSLRRAKEEEENHLLPGLDWTT ALAISVRDTGIGIPKDKQEHVFEAFRQADGATSRQYGGTGLGLSISRDLAGLLNGCIHLA SEEGAGSTFTLYICCLDRADTAGMEAASALEAEASALPAPAKPKPKREAAGRTGTIIAGK TVLIVDDDPRNVTALSVALESRGMRVLTAGDGIECLALMDHTPDIDVVLMDIMMPGMDGY EAMTRIRERAEWADLPLIAVTAKAMKNDRDKCIEAGASDYISKPVDLNQLISLLNVWLNE N >gi|333605800|gb|AFDH01000075.1| GENE 50 46696 - 47076 335 126 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_2076 NR:ns ## KEGG: Pjdr2_2076 # Name: not_defined # Def: cytochrome c oxidase subunit II # Organism: Paenibacillus # Pathway: not_defined # 1 126 1 127 129 85 40.0 5e-16 MYKWIMFVLFIGASAMGVGFLFQDINARQAERAAEETAGASLKIAASNWKFDQAEYKIPK GQTKVSLILKEGVHAIDITGEGVDVKLDGTNKSQEVNFEKPGKYEIKCILPCGEGHNDMK SVLVVE >gi|333605800|gb|AFDH01000075.1| GENE 51 47246 - 48067 965 273 aa, chain - ## HITS:1 COG:BH1531 KEGG:ns NR:ns ## COG: BH1531 COG0005 # Protein_GI_number: 15614094 # Func_class: F Nucleotide transport and metabolism # Function: Purine nucleoside phosphorylase # Organism: Bacillus halodurans # 7 273 6 272 272 358 67.0 6e-99 MSTEKQRVNEAAAYIEQKLGFRPTIGLILGSGLGVLADLIEEAVVIDYSDIPHFPVSTVE GHASELVAGTIKGRQVVMMKGRFHQYEGYGAETVAFPVRVMKDLGVQTLIVTNAAGGVNT SYEVGDLMVIQDHINFMFRNPLIGPNDDELGVRFPDMSEAYSRRLGKLAHSVAEKQSFSL REGVYLGLLGPTYETPAEIRMIRTLGADAVGMSTVPEVIVARHAGIEVLGFSCISNMAAG ILDQPLSHQEVMETTERVKPKFLQLVLGIIEEL >gi|333605800|gb|AFDH01000075.1| GENE 52 48319 - 49236 864 305 aa, chain - ## HITS:1 COG:BH1529 KEGG:ns NR:ns ## COG: BH1529 COG4974 # Protein_GI_number: 15614092 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinase XerD # Organism: Bacillus halodurans # 7 302 4 299 299 306 51.0 3e-83 MKEQGNLREDLEVFMDYLEHEKGLSRNTLESYARDLQQYIEFLEQQNIRSLGETSKVHVV SYISRLKQLGRATATQSRTLVSIRSLYGYMIRCGRMDFDPTRDIENPKQEKKLPQVLTMD EMERLLAAPQSDTSNGIRDKAMLEVLYATGIRVSELISLDVGDVNTSLGFVRCVGSGAKE RIIPLGSMAAKVVDEYVSASRPQLMKAHKPETALFVNHLGTRMTRQGFWKMLKRYAADAE VDKDITPHTLRHSFATHLLENGADLRSVQEMLGHADLSTTQVYTHVTKSKMKEVYDRTHP RAKMT >gi|333605800|gb|AFDH01000075.1| GENE 53 49300 - 49536 313 78 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|253576346|ref|ZP_04853676.1| ## NR: gi|253576346|ref|ZP_04853676.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14] predicted protein [Paenibacillus sp. oral taxon 786 str. D14] # 1 78 8 85 85 72 44.0 1e-11 MIVSVHKWLERTKFLVLFVTLTYVLYRAFALFSVWVEPVDKYRHPSGTSVKVFQQHAIQT EGSESMAARLRLFYWYGE >gi|333605800|gb|AFDH01000075.1| GENE 54 49661 - 50470 224 269 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 17 266 4 240 242 90 29 1e-17 MEQTNTVHTGEYGLAGKTALITGASSGIGKAAALRLAKLGVKVCLVDIRKEYAEDVQEII MRKGGEAIVAEADISDPEQVKEAYVKLQETWGRLDIVLANAGINGKIAPIEDLEPEEWDA TLQTNLKGTFLTVKYAVPLLKENGGSIVITSSINGTRIFKNFGFTAYSSSKAGQAAFAKM AALELARYKIRVNVICPGSVDTNIEDSTERTPELEEIRIPVEYPETSMPLADRPGTADQV ADLLVFLSSDLSSHVTGTEVYIDGAESLL >gi|333605800|gb|AFDH01000075.1| GENE 55 50707 - 51228 547 173 aa, chain - ## HITS:1 COG:BH1527 KEGG:ns NR:ns ## COG: BH1527 COG0735 # Protein_GI_number: 15614090 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+/Zn2+ uptake regulation proteins # Organism: Bacillus halodurans # 1 143 1 143 150 199 70.0 2e-51 MEARIEKIKQQLQSQGYKLTPQREATVRVLLENEEDHLSAEDVFMLVKDKAPEIGLATVY RTLELLSDMHVLEKMNFGDGVARYDLRSDSTHHHHHHLICVQCGAVDEIMEDWLGPLEER LAREYNFKVLDHRLDFQGICHRCLEKGADQPKNKDANPKHHHHHASAKPSTLV >gi|333605800|gb|AFDH01000075.1| GENE 56 51331 - 51972 801 213 aa, chain - ## HITS:1 COG:BH1526 KEGG:ns NR:ns ## COG: BH1526 COG1300 # Protein_GI_number: 15614089 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Bacillus halodurans # 5 204 12 212 217 144 42.0 1e-34 MPAMQTLKQYFKEQFTLFLFVSVLFVVGVVFGAVMVNALSLEQKQELGRYLSSFYRTIED GAQVDGKQSMLAAFSLHMKWILLIWTLGLSVIGLPLILVLDFLKGVLIGFSVGFMVGQLS WKGIAFALVSIAPPNLIVVPAILICSVVSISFSLFIIKNRLVRRSGTIYHPFMRYSGVTL AMGVCMLGAALLEAFVSPTMMKWVTPMLAALTN >gi|333605800|gb|AFDH01000075.1| GENE 57 52161 - 52664 621 167 aa, chain - ## HITS:1 COG:no KEGG:Bsph_3662 NR:ns ## KEGG: Bsph_3662 # Name: not_defined # Def: hypothetical protein # Organism: L.sphaericus # Pathway: not_defined # 1 165 1 169 170 172 50.0 5e-42 MKKKWGLLTATLLCASMLAAACGSGGAKQDAHGDGAAHQAANGDLQEKTASSAVLPKFLN KQREEIRLVYELAGKNADLLQSMPCYCGCGESAGHKSNQNCFIHETNADGSVVWDDHGTR CGICMEIAVKAVSLKKDGKTPLEIRKQIDETYKGTAGKPTDTPLPEA >gi|333605800|gb|AFDH01000075.1| GENE 58 52728 - 53957 1342 409 aa, chain - ## HITS:1 COG:BH1525 KEGG:ns NR:ns ## COG: BH1525 COG1379 # Protein_GI_number: 15614088 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus halodurans # 5 389 7 387 391 354 48.0 2e-97 MLRTYYADLHIHIGRTEKGAAVKISGARNLTFYNIAREASDRKGIEIVGIIDCHSPAVQE EIEHYLAAGEMKELAGGGIRYHQTTVLLGSEIEVRDPGMGPVHLLVFLPKLAQMKEFTEW MRPRMKNVELSSQRMYVTARELQAEVLRRGGILIPAHIFTPHKSIYGSGSTRMEHMLDLD GLAGVELGLSSDSEMAGYLPELDRYTYVTNSDAHSLGKIGREYNELRLAEPTFAELVLAL RREGGRAVTANYGLNPRLGKYHRTYCLSCESILDESEAAVGRCLYCGSPKVVRGVMDRIM ELADREEPHVPDYRPPYYYQVPLEFIPGLGKRKLDQLLARFGTEMNILHRATRSELAETV GDDIAGMILDARTGVLDLQVGGGGTYGKVKAPAKAKPADKGTNGTRANG >gi|333605800|gb|AFDH01000075.1| GENE 59 53957 - 54442 548 161 aa, chain - ## HITS:1 COG:lin2079 KEGG:ns NR:ns ## COG: lin2079 COG0494 # Protein_GI_number: 16801145 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Listeria innocua # 1 153 22 176 185 162 54.0 2e-40 MQVDHVRLPNGETATREIVKHPGAVAVLALTDDDRMIVVEQYRKALEKSQVEIPAGKLDP GEEPIRAAIRELEEETGYSSESVRPVCSFYTSPGFADEILHLFVAENLVRGEARPDEDEF LECEAITLQEAKELIARGSISDAKTITAVYAWQAYKLTGSF >gi|333605800|gb|AFDH01000075.1| GENE 60 54740 - 54877 80 45 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKNYTASESLCLVGKAWEIKQYLQLAVQKGGRDLPLVVFLEQKSG >gi|333605800|gb|AFDH01000075.1| GENE 61 54913 - 55938 800 341 aa, chain - ## HITS:1 COG:lin0463 KEGG:ns NR:ns ## COG: lin0463 COG1316 # Protein_GI_number: 16799539 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 2 266 7 261 309 149 35.0 9e-36 MKRERRRKRFWLWAALPLALLLAVGGYYAWNAYHSWNLVYKERTETGVPQTNPVNPAPVR ETLAKQTYVFLMLGIDSGNVEQGRSDTNMLAVADSSSQKITLLSIPRDTRIRIQGHGKEK LAHAYAYGGADLAVKTVEAFFGIPVDYYVAFNFNGVKEFVDTLGGLSIDVEKNMDFDDRI THRHVYLKKGRQTLNGQQTLNYARYRGDADGDFGRMRRQQQVVRELLTQTVQYRNVAKIN NLLKIMGGNVRMDIPARTVFQFASTFSALTGNDVVTMPLDAATAMIGGVSYMNITESERS RVAAELQRLIRKQPEPTAGPLQSYGIHDSIEPGVGSRFGRP >gi|333605800|gb|AFDH01000075.1| GENE 62 56196 - 57332 1265 378 aa, chain - ## HITS:1 COG:BH1469 KEGG:ns NR:ns ## COG: BH1469 COG2195 # Protein_GI_number: 15614032 # Func_class: E Amino acid transport and metabolism # Function: Di- and tripeptidases # Organism: Bacillus halodurans # 1 372 1 368 372 399 58.0 1e-111 MIQQERLIKEFIELVQVDSVTQYEQEISVVLQTKFKELGLSIQTDDAAEKTGHGAGNLIC MLEASGAPESTPCIFFTSHMDTVAPGNGIKPQIGEDGIIRSDGTTILGSDDKAGIAAMFE AIRVLKEQNIAHGPIQFVITVGEESGLKGARAMDPSVMKAEFGYALDSNGEIGEIAVAAP ARAEIKIVMYGKSAHAGVNPEDGISAIQVASKAVSRMKLGRLDSETTANIGSFSGLGPLN VVCDRVLLEAEARSIVQSKLEAQLAAMEQACKDTAADFGTTCDFEADIVYPAFMHDETSP VVKLAMKALEGMGCKTSTFHSGGGSDANIFNGMGIPTVNLAVGYKEIHTTNEHIAVSDLV KTAEAVVAIVREVTEQAK >gi|333605800|gb|AFDH01000075.1| GENE 63 57404 - 57505 152 33 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKRNRLFKIVVYIMLFSMVASTLMVSLSFLTTS >gi|333605800|gb|AFDH01000075.1| GENE 64 57512 - 58915 1301 467 aa, chain - ## HITS:1 COG:BH2761 KEGG:ns NR:ns ## COG: BH2761 COG0508 # Protein_GI_number: 15615324 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes # Organism: Bacillus halodurans # 10 467 4 426 426 386 48.0 1e-107 MSESKFRLAEVPVPHLAESLVSATVGTWLKQPGDYIQQYDVLCELYTDKVNVEMPSPIEG RLVKILVGSGETAAVGDPICLLEVPETAETASAGASGGPASQGDSAAAIAEDSADQSMRG RYSPAVQRLAAENAVDLGRVKGTGFGGRITRKDVETYIAQGGAQAAPSGGSQAARQTHAA PAAQQAPSAPAHQPSAEAPVVNPYRPEPQIPVRSSGIHLSQNPPTPLEFDKNSDSRGETF IDVTPIRNTIASRMRQSVSEIPHAWTMIEVDVTNLVTLRSKVKEEFMRREGINLTYLPFL LKAVVNAIKDYPIMNSVWAVDKIIIKRDINLALAVGTEESVLTPVIKKADQMNIAGLALE ADTLTKKARTGKLSLNDLQGGTFTVNNTGSFGSILSQPIINYPQAAILTFESIVKRPVVI QDMIAVRSMVNICLSLDHRILDGVICGRFLQRVKENMEAYNLETKLY >gi|333605800|gb|AFDH01000075.1| GENE 65 58930 - 59307 556 125 aa, chain - ## HITS:1 COG:BS_bfmBAB KEGG:ns NR:ns ## COG: BS_bfmBAB COG0022 # Protein_GI_number: 16079460 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit # Organism: Bacillus subtilis # 2 125 204 327 327 162 65.0 1e-40 TDLTVIAYGIAVHYALQAAEELAKEGISAHVLDLRTIQPLDVEAILEAAAKTGKVLIAHE DNKTGGIGAEVAAIVAEELLYDLDAPIRRLCGPDVPAVGMNPPMEKFFLLNTDKLADAMR ELAQF Prediction of potential genes in microbial genomes Time: Sun Jul 17 09:31:00 2011 Seq name: gi|333605781|gb|AFDH01000076.1| Paenibacillus sp. HGF7 contig00126, whole genome shotgun sequence Length of sequence - 20720 bp Number of predicted genes - 17, with homology - 16 Number of transcription units - 11, operones - 6 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 467 - 493 -1.0 1 1 Op 1 11/0.500 - CDS 612 - 1814 429 ## COG0477 Permeases of the major facilitator superfamily 2 1 Op 2 . - CDS 1839 - 2420 292 ## COG1309 Transcriptional regulator - Prom 2451 - 2510 6.6 - Term 2580 - 2608 2.3 3 2 Op 1 . - CDS 2735 - 2956 268 ## PROTEIN SUPPORTED gi|163756262|ref|ZP_02163377.1| 50S ribosomal protein L20 4 2 Op 2 . - CDS 2967 - 3449 240 ## BATR1942_08655 YoaS protein - Prom 3566 - 3625 8.2 - Term 3563 - 3612 7.2 5 3 Op 1 . - CDS 3758 - 5179 482 ## GYMC10_4878 hypothetical protein 6 3 Op 2 . - CDS 5254 - 5538 187 ## COG0640 Predicted transcriptional regulators - Prom 5576 - 5635 5.3 7 4 Tu 1 . - CDS 5682 - 6431 304 ## COG1451 Predicted metal-dependent hydrolase - Prom 6629 - 6688 6.5 + Prom 7179 - 7238 7.0 8 5 Tu 1 . + CDS 7459 - 8946 969 ## BBR47_13640 hypothetical protein + Term 8959 - 9007 7.0 - Term 8951 - 8995 2.3 9 6 Tu 1 . - CDS 9052 - 9687 151 ## COG0583 Transcriptional regulator + Prom 9896 - 9955 3.1 10 7 Tu 1 . + CDS 10044 - 11405 112 ## COG0477 Permeases of the major facilitator superfamily + Term 11508 - 11569 14.9 + Prom 11550 - 11609 10.9 11 8 Tu 1 . + CDS 11650 - 13704 1027 ## COG1680 Beta-lactamase class C and other penicillin binding proteins - Term 14310 - 14354 12.1 12 9 Op 1 . - CDS 14459 - 16333 534 ## COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component - Term 16372 - 16421 3.1 13 9 Op 2 . - CDS 16434 - 17261 369 ## BBR47_26390 hypothetical protein - Prom 17295 - 17354 6.8 - Term 17332 - 17387 11.2 14 10 Op 1 12/0.500 - CDS 17406 - 18377 202 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) - Prom 18429 - 18488 1.9 15 10 Op 2 12/0.500 - CDS 18505 - 19425 182 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) - Prom 19555 - 19614 3.6 - Term 19598 - 19657 19.1 16 11 Op 1 . - CDS 19706 - 20491 -3 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) 17 11 Op 2 . - CDS 20530 - 20688 139 ## Predicted protein(s) >gi|333605781|gb|AFDH01000076.1| GENE 1 612 - 1814 429 400 aa, chain - ## HITS:1 COG:BS_blt KEGG:ns NR:ns ## COG: BS_blt COG0477 # Protein_GI_number: 16079712 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus subtilis # 1 394 1 394 400 477 69.0 1e-134 MKKPLKEQKTVLLILLSNIFIVFLGIGLIIPVMPSFMNMMHLSGQTMGYLIAAFSIAQLL MSPLAGRWIDCYGRKNMILIGLFLFSVSEVIFGLGTHVSVLYLSRILGGISGAFIMPAVT AFVADVTSVEERPKAMGYISAAISIGFIIGPGIGGFIAELGVRAPFYFAAGFALITCISS LFILKEPLTKQQLLEITQLKKDTNFVMDLKRSLHPLYMIAFIIVFVLAFGLSAYETVFSL YSDHKFGFTPGNIATIITISSIFGVVVQVFMFGKMVDKLGEKKLIQICLISGVVLAVAST MVSSYLAILLITCFIFLAFDLLRPALTTYLSKTAEKEQGFIAGMNSTYTSLGNIFGPALG GILFDVNINYPYLFAAVIMFIGLVITMMWKEKQSVSSLIQ >gi|333605781|gb|AFDH01000076.1| GENE 2 1839 - 2420 292 193 aa, chain - ## HITS:1 COG:lin2193 KEGG:ns NR:ns ## COG: lin2193 COG1309 # Protein_GI_number: 16801258 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 1 191 1 191 194 138 38.0 7e-33 MKSKEIKDIALKFFTIHGYEGASLSQIAENVGMKKQSLYAHFKGKDDLFLQVLQDAKETE ISSKLDYLSKVDTQNPKADLLGYLQLVIDLFQQSEQLKFWLRMSFFPPLHLATAINEEVF DTEQKIQTVLENKFQAWIDAKAITEDTAFIPTLAFLGIVDSIMLELAYGNNEKRLNDKLN ASWTVFWRGISQL >gi|333605781|gb|AFDH01000076.1| GENE 3 2735 - 2956 268 73 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163756262|ref|ZP_02163377.1| 50S ribosomal protein L20 [Kordia algicida OT-1] # 1 65 1 65 67 107 80 5e-23 MAIIINIDVMLAKRKMSVTELSERVGITMANLSILKNGKAKAVRLSTLEAICKALDCQPG DILEYKMDEDAQG >gi|333605781|gb|AFDH01000076.1| GENE 4 2967 - 3449 240 160 aa, chain - ## HITS:1 COG:no KEGG:BATR1942_08655 NR:ns ## KEGG: BATR1942_08655 # Name: not_defined # Def: YoaS protein # Organism: B.atrophaeus # Pathway: not_defined # 1 160 1 160 160 210 81.0 2e-53 MERGTTLFLKIALILIGVPVLAMCIFLVPGIANFAAELYPEHSYLKYLLWIDLYATALPF YFALYQAFKLLSYIDKNKAFSELSVQALKIIKTCALIFGGLYVAGMPLFYLMAEKDDAPG FIVIGMVLIFASMVVAVFAAVLQKLLKEAIDIKSENDLTV >gi|333605781|gb|AFDH01000076.1| GENE 5 3758 - 5179 482 473 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_4878 NR:ns ## KEGG: GYMC10_4878 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 6 472 5 473 474 447 50.0 1e-124 MNHNNRLIIGNKSIVLGNELNIESLVVQSPVSTLVQLDNGAVDWNLSAGVYRAKDIVREL DTLLEAVLVQLGTAADAEALLYNLQANLAISGRESDLPLEQLALETEPGIELTRQAQRIG EEISRWAREFNSEKWASKANGNSTLDQLHFRSRCDNHLWTQQVASMLMGPAGGPDVMQMF NEYLHQLILLRDALLPFENWEEVPIEIPDDSSRGKGLRFVERGREEFFYKLLSKKMSHKT IVQFAQNVLSPELSTVGYGFQYQLGTILPASLSSGQLTASRYLLRWYPVLPVMAGNDNKP ASIAFDYEYSDYFAAPRSQTAGGIKSTGLQLPDQGLKNIVEARIVPSGDKERVVLHYKLA IHSVEYTVDLGQAFRGHRFMYHPVEQSGSTTERTETPTEISTHDVCDILNLHGLVTNESG IHFISADGNPLVLWALLGKLYPENVVFLGSVCEQELQNAHRSGKGFGAKFLIG >gi|333605781|gb|AFDH01000076.1| GENE 6 5254 - 5538 187 94 aa, chain - ## HITS:1 COG:MJ1325 KEGG:ns NR:ns ## COG: MJ1325 COG0640 # Protein_GI_number: 15669515 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Methanococcus jannaschii # 4 93 1 89 89 66 40.0 1e-11 MNNVQSHHEAVKIFKALGEPTRLNIVKLLNKHKELSCTEIGDHLHFKGSTLSHHLKQLVD CGVLRLSRKEGTYHFYQINQDTLKRHVVLGGDLD >gi|333605781|gb|AFDH01000076.1| GENE 7 5682 - 6431 304 249 aa, chain - ## HITS:1 COG:BMEII0448 KEGG:ns NR:ns ## COG: BMEII0448 COG1451 # Protein_GI_number: 17988793 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase # Organism: Brucella melitensis # 35 245 9 242 246 104 29.0 2e-22 MRIPKLSGVKQDSVTAAYVGLLPIKRTEMMLMMKIVLGQQQIEVHVEYGPRKKLSLQIDP SGLVTVKAPNHTADDVVMNAVRQHGNKILKQLQAIEAARAPRKFREYEEEGKFLHLGRYY PLHELIETNGRTEQELQDDLKKFYFASCKKVIGERIKIYQKQLKVTPKSFIIEESRTKWG SCNSAKHLTFNYRLAMAPVDVIDYVVIHELCHLLHMNHDRSFWRRVGSVMKDYKAKEAFL ARYGHAMTL >gi|333605781|gb|AFDH01000076.1| GENE 8 7459 - 8946 969 495 aa, chain + ## HITS:1 COG:no KEGG:BBR47_13640 NR:ns ## KEGG: BBR47_13640 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 203 476 294 551 559 107 26.0 1e-21 MKKFVHAPLSLGMAFSLLFGLSGLPSHGYAAGNDLLLNPEIISGSTDRTDSGAAALNLGD NLIANPGFEDNLASWTNWGNTSSVTSPAFAGAKAARIASGEGGAGQIIPGIPSGTTYVLS GHGSVSAGTDTAIVGVDCLDANNNVLAKNTLRFNQTLYEFKSTAFTTVPGTAKLQVYIYK NADSGANAFLDDLSLKARSGVQAINKDVKAMWVWQETTSVLEDSAERSTLFQFAQDKGVN VLLLAINKTHLTTYNSQLKQFISQAHAKGIRVEAVSGEIDWGLTDKHSVGLERITDVITF NGSAASNEKFDGVHQDIEVYRNKTLWNDNKALVMEQALAYIDKAKALMSGTGMTYAQDIP RWYDGPEYTVTYNSVDKGFYKHLIDRLDWVGLMDYTDRYSDGQWQAVRDAQSEIDYAAQV GKKITVGLETIDPVTAGGDSVTFYEEGLDDLDRALAAIKAHYDGHAGFGGVAVHSYGKQK GNAYYSLPVKAVNHY >gi|333605781|gb|AFDH01000076.1| GENE 9 9052 - 9687 151 211 aa, chain - ## HITS:1 COG:BS_yybE KEGG:ns NR:ns ## COG: BS_yybE COG0583 # Protein_GI_number: 16081119 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus subtilis # 17 206 86 276 278 89 27.0 6e-18 MRDLSGLEPSTLELAVTTASTLPPILREFRKKMPDIQFHVQMLATQEMVTLLHRGEVDFC LSSPPIEGEDIECQIVCIDPILVAIPKGHRLADRSSVSLTELRDEWFVGVKRGYGTRDLV DSVCNSVGFAPKYVYEGDEPARLSALVEAEIGIAFLPSTARNSRENIHYLQVEDHELVRE IALIGHKSRYISRAALEFRKVVVDYFGTNPK >gi|333605781|gb|AFDH01000076.1| GENE 10 10044 - 11405 112 453 aa, chain + ## HITS:1 COG:BS_ywoD KEGG:ns NR:ns ## COG: BS_ywoD COG0477 # Protein_GI_number: 16080701 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus subtilis # 8 451 10 443 452 297 43.0 4e-80 MNARSWWLMISVGLGILLNPLNSSMVSVAIPNLQNVFQLDFTRVSWIIFSFYIASAVAQP VMGKASDLFGRRKIFLTGLIVAFFASMAAPLSSNFGWLIGFRIVQSVGTSMMVGVGMAII RMSITENQASALSVLSIFLSGAAAIGPFIGGILIHLWDWPAIFFVNIPFAVAGFLLAWRT IPKDEPPASVTRGMSFRKWLHLIDASGILLFTVGLVALLVGLLSVKSSGPITVGNGIVGL TGLILLLAFIRHELKTTSPFIPLRIFARYPAMTWVNVEFMLVNVLYYSLFFGLPSYLQTV RHVSEFHIGILMLSLGVCSLAASPLGGRWIDKSGPRPALFLSAILMTFGSVWLVTLNPTS PVISVCLALAAFGISNGLNNVGMQAALFQSSPKEIIGVASGLFNTSRYLGTILSSLLIGT VMGGNFSFEGFRTLGIILTVIALSLIFMSRRRR >gi|333605781|gb|AFDH01000076.1| GENE 11 11650 - 13704 1027 684 aa, chain + ## HITS:1 COG:CAC2808 KEGG:ns NR:ns ## COG: CAC2808 COG1680 # Protein_GI_number: 15896063 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Clostridium acetobutylicum # 23 679 76 732 739 542 44.0 1e-154 MKKMVSVFITAMLLTIPATSVFAQTNHDPVKEKAKELASKIVSGYGASGIQYAIRDHGSL VLSDSAGVSDKANKQPITQNTMFGIGSVSKMYVTAAAMMLADSKKIELDKPLTTYIKEFK MADERYKKITPRMLMNHSSGLYGSHYGNGTMFDDKDTRNHDELLEKLKSEHLKANPGEFS VYCNDGFQLLELLVERVSGLSYSRFLETHVSKPLQLTSTKTPLDSFDRNRLAKIYNPAVD QALPVENVNVLGTGGLYSTAEELSKFGEVLIGNRTDILSEKSVKAMQSHEYLNGVWVPEE NNTINYGLGWDAVRLAPFDDYGITALSKGGDTQSYHAVLISLPEHDISIAVLSSGGTSIH NTAFASNVLLEYAKAKGIIKEILPEKTFQPPVKVDMPSDMQAYSGLYGSVGKTANLEIKN GEIDLPALLGEVIPAQKYVYTGSGQFKNNDGNVTLSFDLAKNGKTYLKLNTYLNFPGVGQ IVIVTYDFQKLDPNPLDQTTKTVWEHRNGKNYYAVDEKITSVRYINQAGVTIKISVDTGH GYASGTKIVSENKTVNAAAIPVITGRDVFDLNFYQKNHKEYLSTHGQVYIREDAIQPFSQ GNSEIRSIPSDGKAVWYKIDKKSANRVLTVKAPASGGFAVYDAEGTVVNFSKVSGMHSVV LPEGGMIVFGGNAGDVFKIDLKNN >gi|333605781|gb|AFDH01000076.1| GENE 12 14459 - 16333 534 624 aa, chain - ## HITS:1 COG:lin2073 KEGG:ns NR:ns ## COG: lin2073 COG0614 # Protein_GI_number: 16801139 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-hydroxamate transport system, periplasmic component # Organism: Listeria innocua # 361 607 32 278 313 140 34.0 8e-33 MLWNQVFIKIMDVRHTAMEKGEALRAYRLPVSAFLYTIRGSAQVWLDGNAHVAKEPYIFH GGKGMNLTILASDELEYYMILYKPILPLPNRQEFVHLMGEDNPFHFQYAFAPSHPLALFD KLVRLEKEWDQTHALDKLHVKAIFYQFVYELLRQLDQQRIRPVRPNLASLAAHYIHEHYA ETITLESLAQALDCSEGHLSRQFKSEMQNSPIHYLNQVRMNNAIRLLMRTDATLQEIAEQ VGFMDAHSLSRSFKKYKGLSPARFRKKHAHDWQDRELPLSMDGIAVLQTNNPLYNDIENH YQYKTGRELLMQRRTKIAVMALVMCISLLVSACGNTAHPNVNSQGSANKTEQSNQQAAAT VKTRIVSTQKGDIKIPAEPKRVASDQYFGYLLKLGIVPVGVRSIMLNEAWISKSGLPETV MAGIEDLGDFPMNPEKLTYLEPDLIISSIEENIELYEKIGTTVFLPYWEDNSTAGPIDKF RRISKIFGKEQAAEEWIAEYEQKVADAKKKIAGIIKEGETVSIVQFGWNGLYVLAAEGGN YGSSTIYQMLRLPPTKQALQMKDGFAKVSLEVLPDYLGDHVFVYGAEDKGAEKILNSPVW KGVPAVKKARCTITVPPERNKMSL >gi|333605781|gb|AFDH01000076.1| GENE 13 16434 - 17261 369 275 aa, chain - ## HITS:1 COG:no KEGG:BBR47_26390 NR:ns ## KEGG: BBR47_26390 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 18 261 13 253 260 162 33.0 2e-38 MQRKTMNEAMLEKLESTFNVTAKKQENPVFSCPAADLTDENKVKLLLDFYTPLVKGLDPS VGEVYMADWFQGPLLGLIYMLSAWNKTPDLTLDNLTVQMYTASYNDREYYAINFLLTNLE LHDGPDEPLERASWTEEKLSRFLSQTVRPVFETIAKAGTLKTGMLWSQLPTMLEYGYERL MESEECETVMHRMTRNYEIVKSLNGAVFGKSKNPLNVKFRMTQSKASPDKQVRLKAACCL YYLVDGGHYCFTCPRVKETERDKWREEYREEQKAK >gi|333605781|gb|AFDH01000076.1| GENE 14 17406 - 18377 202 323 aa, chain - ## HITS:1 COG:BS_ybdG KEGG:ns NR:ns ## COG: BS_ybdG COG0596 # Protein_GI_number: 16077268 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Bacillus subtilis # 10 267 2 264 296 117 31.0 2e-26 MELKAEVIKKRMSKPLRMILKSLGAIAILIVLFLAIVFIVDKVASKSEQGKIEPYGQSVT VDGKKMNVLIQGKGQETVVLLPGYGTAAPALDFKLLIDELSPYYKVVAIDPFGYGLSDRT EKERSTENIVSEMHEALQQLHIDRYTLMGHSIAGIYGLDYVNKYPNEVSAFVGIDSSVPT QPGMDVKFPLTMFRFLKQSGLQRFIVNVGSDPYASLLFDDKTKEQMKMIMNKNANNNTML NEMKNISSNFKGAQNLTFPKNLPLLLFVQANNTSVEGWIPLHEGQIKDSVHGKVITMDGS HYLHHTKFKEIAENFREFMKGIK >gi|333605781|gb|AFDH01000076.1| GENE 15 18505 - 19425 182 306 aa, chain - ## HITS:1 COG:BS_ybdG KEGG:ns NR:ns ## COG: BS_ybdG COG0596 # Protein_GI_number: 16077268 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Bacillus subtilis # 1 250 7 264 296 116 30.0 5e-26 MLKVIGAILIAIVLLLAIVYTVHTISTHSEQKKLEPYGQHVAVDGKNMNVTIQGQGEETV VLLPGFGTAAPALDFKPLIEELSPFYKVVVVEPFGYGLSDLTDKERSTENIVSEIHEALQ VLHIERYVLMGHSISGIYGLDYVNKYPNEVSAFVGLDSSVPTLSEKRFSSSEIETVKLLK KSGFSRLLMKPDTDVYAELPYDDQTIEQIRILMYKNMVNSNLLNEIEHMYSNFTRAENST FPKNLPVIFFIQANHPATDRWIPEHEKQIKDSAHGKVVLLEAGHYLYRSHSKEIAENFRE FMKEIK >gi|333605781|gb|AFDH01000076.1| GENE 16 19706 - 20491 -3 261 aa, chain - ## HITS:1 COG:BS_ybdG KEGG:ns NR:ns ## COG: BS_ybdG COG0596 # Protein_GI_number: 16077268 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Bacillus subtilis # 1 205 55 264 296 94 31.0 3e-19 MNVLIQGQGEETVVLLPGLGTGTPALDFKPLVEELSPFYKVVVVEPFGYGLSDGTDKERS TENIVSEIHEALQRLNIDRYILMGHSISGIYALNYVNKYEHEVSAFAGIDSSAPKQYGDK VVESPIPSSVITLLKESGLGRLIMKLSADPYAALPVDDETKEQMRILSYKNFRNPTIVNE IENRSPNFKSAENLTFPKNLPVIFFLQPDSAALEGWSTLHEEQVKDSVHGKVMTFEGTHY LHHTQSKEIAENFRAFMEGIK >gi|333605781|gb|AFDH01000076.1| GENE 17 20530 - 20688 139 52 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MDTTTGKKPANKMKKWLIVLLKIVAAFVMAIVVFLAIVFVVDKISSKSEEGK Prediction of potential genes in microbial genomes Time: Sun Jul 17 09:31:33 2011 Seq name: gi|333605762|gb|AFDH01000077.1| Paenibacillus sp. HGF7 contig00092, whole genome shotgun sequence Length of sequence - 17209 bp Number of predicted genes - 17, with homology - 17 Number of transcription units - 6, operones - 4 average op.length - 3.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 9/0.000 - CDS 65 - 1642 778 ## PROTEIN SUPPORTED gi|163762515|ref|ZP_02169580.1| ribosomal protein L19 2 1 Op 2 16/0.000 - CDS 1692 - 2003 317 ## COG1677 Flagellar hook-basal body protein 3 1 Op 3 24/0.000 - CDS 2029 - 2478 353 ## COG1558 Flagellar basal body rod protein 4 1 Op 4 2/0.000 - CDS 2482 - 2895 177 ## COG1815 Flagellar basal body protein - Prom 3012 - 3071 6.7 - Term 3042 - 3084 5.3 5 2 Op 1 4/0.000 - CDS 3116 - 3901 491 ## COG4465 Pleiotropic transcriptional repressor - Term 3930 - 3961 2.1 6 2 Op 2 24/0.000 - CDS 3966 - 5366 1548 ## PROTEIN SUPPORTED gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 7 2 Op 3 . - CDS 5443 - 5994 550 ## COG5405 ATP-dependent protease HslVU (ClpYQ), peptidase subunit - Term 6038 - 6084 8.3 8 3 Op 1 6/0.000 - CDS 6154 - 7482 1078 ## COG1206 NAD(FAD)-utilizing enzyme possibly involved in translation 9 3 Op 2 13/0.000 - CDS 7518 - 9614 1443 ## COG0550 Topoisomerase IA 10 3 Op 3 2/0.000 - CDS 9685 - 10797 634 ## COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake - Prom 10820 - 10879 5.5 - Term 10885 - 10917 1.0 11 3 Op 4 39/0.000 - CDS 10920 - 11852 928 ## COG0074 Succinyl-CoA synthetase, alpha subunit 12 3 Op 5 . - CDS 11915 - 13075 1386 ## COG0045 Succinyl-CoA synthetase, beta subunit - Prom 13225 - 13284 4.1 - Term 13175 - 13214 -0.2 13 4 Tu 1 . - CDS 13387 - 13647 301 ## gi|167463749|ref|ZP_02328838.1| hypothetical protein Plarl_14529 - Prom 13751 - 13810 5.4 + Prom 13674 - 13733 5.7 14 5 Tu 1 . + CDS 13812 - 15407 916 ## COG0606 Predicted ATPase with chaperone activity + Term 15637 - 15673 7.0 - Term 15617 - 15669 9.2 15 6 Op 1 . - CDS 15733 - 16107 305 ## COG0792 Predicted endonuclease distantly related to archaeal Holliday junction resolvase 16 6 Op 2 . - CDS 16109 - 16483 335 ## COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB 17 6 Op 3 . - CDS 16480 - 17208 500 ## Pjdr2_3472 hypothetical protein Predicted protein(s) >gi|333605762|gb|AFDH01000077.1| GENE 1 65 - 1642 778 525 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762515|ref|ZP_02169580.1| ribosomal protein L19 [Bacillus selenitireducens MLS10] # 1 525 1 527 528 304 33 3e-82 MNERLLQYWEKAKQYWNQYSKTTKLTFVAALFVLLLTIGIISYNLAKTEYSLAYTNLQPA DAAAIKGYLDTAKIPYNLSSDGKSIEVPKNEVANVKLGIESQGLNKGSSIGYDAFASDSA FGMTDNEFKVKYLSAVQGELQQLINSNEAVDKSKVLISMPDETVFLANQKQEATASVVLN VKQGYSLDQGQVDTIYNLVSHSVKNLPLQNITISDQYGQFLAYSKETNGGQSTSGLVQNQ FDIRRKFETSVQGNITNLLNKMLGPDKVVVSVFSTMNFDQKKTTENLVTPPNVEDKKGLE ISTQESSKTSTSTGGNTGGVAGTGQTDVPGYPGGAASGNANSEESSKTVNYEINRITNDI IQTPYVVKDISINIGFDSTGKDQAAVAELKGLIEGQMANIVRASLADNKVEYTPAQIQDK VKVVPQTFVTPSGIAGTNWQQYLLYGGIGLAALLLGALGMYAIRRKKKAGEEEDELDLPP AKVEYPTIDIENVSNENQVRKQLETLAKKKPDEFVNLLRTWLVDE >gi|333605762|gb|AFDH01000077.1| GENE 2 1692 - 2003 317 103 aa, chain - ## HITS:1 COG:TM1366 KEGG:ns NR:ns ## COG: TM1366 COG1677 # Protein_GI_number: 15644118 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar hook-basal body protein # Organism: Thermotoga maritima # 19 103 10 94 94 67 37.0 5e-12 MVNPTYLNAFSPVQTIKQPVGSEPASASQFTKQFSSFLSEAMNGLNSDQHTVDGLNQQFA KGELSDVHQLMIASEKASLGLEFTVQVRNKVVEAYQEVMRMQL >gi|333605762|gb|AFDH01000077.1| GENE 3 2029 - 2478 353 149 aa, chain - ## HITS:1 COG:BH2460 KEGG:ns NR:ns ## COG: BH2460 COG1558 # Protein_GI_number: 15615023 # Func_class: N Cell motility # Function: Flagellar basal body rod protein # Organism: Bacillus halodurans # 1 149 1 152 152 174 61.0 4e-44 MRITNSFDISASALTTQRLRMDVISSNIANADTTRASFVNGQWTPYQRKIVSVEPKNQPT FAQMLNSAMTDGTGQGVRVSGISGDTTPFKQVYNPSHPDANQQGYVMMPNVDVAKEMVDM ISATRSYEANVTALNASKGMISKALEIGR >gi|333605762|gb|AFDH01000077.1| GENE 4 2482 - 2895 177 137 aa, chain - ## HITS:1 COG:BH2461 KEGG:ns NR:ns ## COG: BH2461 COG1815 # Protein_GI_number: 15615024 # Func_class: N Cell motility # Function: Flagellar basal body protein # Organism: Bacillus halodurans # 1 137 1 132 132 76 33.0 1e-14 MFLLNQAGFQWMEKSLDASALRQRVISNNVANADTPHFKRSDVLFEELLQEKMTGNQPVL EGRRTNSRHLQIPSNTNLPGQAVVESDPNSLMNNNLNNVDMDYEMSLMAKNQLKYNTMVQ EMNNEFRKLKIAMDGRR >gi|333605762|gb|AFDH01000077.1| GENE 5 3116 - 3901 491 261 aa, chain - ## HITS:1 COG:BH2462 KEGG:ns NR:ns ## COG: BH2462 COG4465 # Protein_GI_number: 15615025 # Func_class: K Transcription # Function: Pleiotropic transcriptional repressor # Organism: Bacillus halodurans # 1 259 1 258 259 285 61.0 4e-77 MTLLNKTRRLNRLLQKEAVSAVSFMDMAEVLRDTIHSNVYVVSRRGKLLGYATTNELPTS AINRIVADEKRFSPEFNHFLLKVDETTSNSDALEMFPTFVEEMKNLREYTYFTIVPILGG GDRLGTLVLCRTHSAFTDDDYILAEYGSTVVAMEILHMRAEEVEQEARSKAVVQVAIGSL SFSELEAVEHIFEELEGKEGLLVASKIADRVGITRSVIVNALRKLESAGVIETRSLGMKG TYIRILNDQLMQAIDQVKSKM >gi|333605762|gb|AFDH01000077.1| GENE 6 3966 - 5366 1548 466 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 [Bacillus selenitireducens MLS10] # 3 466 5 466 466 600 66 1e-171 MSTSSLTPRQIVQELDRYIVGQKQAKKSVAVALRNRFRRSRLEESMRDEIVPKNILMIGP TGVGKTEIARRLAKLVGAPFVKLEATKFTEVGYVGRDVESMVRDLVETSIRMVKSERTES VKERAEELANERLVSILAPSASRPKFQRNPLEMIFGNQQGNQEPDEEDKDPQLATKRAQI KEQLKRGELENYIVEVDVEDNSPSMLDMLAGQGQDQAGMNMQEMFGSLLPKRTKKRKLPV KEARKVLTQDEAQKLIDMDEVIQESIRRAEQSGIIFLDEIDKIAGNGRGSGGPDVSREGV QRDILPIVEGSTVVTKYGPVKTDYILFIAAGAFHVSKPSDLIPELQGRFPIRVELSNLTL EDFVSILKEPKNALTKQYTALLETEGIRIDFSQSAIEEIARIAVEVNQSTENIGARRLHT ILEKLLEDLSFEAPELNLEEMVITPEYVREKLGDIVQNRDLSQYIL >gi|333605762|gb|AFDH01000077.1| GENE 7 5443 - 5994 550 183 aa, chain - ## HITS:1 COG:BH2464 KEGG:ns NR:ns ## COG: BH2464 COG5405 # Protein_GI_number: 15615027 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ATP-dependent protease HslVU (ClpYQ), peptidase subunit # Organism: Bacillus halodurans # 7 183 4 180 180 251 71.0 6e-67 MDPTNATFHATTIFAIRKDGRGAIAGDGQVTFGNSMIMKNTAKKVRRLYRGKVISGFAGS VADAITLFEKFEGKLEEHHGNLQRAAVELAKEWRSDRVLRKLEAMMIVMDEHGLLLISGN GEIIEPDDGIVAIGSGGSFALAAGRALSRYATDMSAADIAKASLEMAADICVFTNHNIIV EEI >gi|333605762|gb|AFDH01000077.1| GENE 8 6154 - 7482 1078 442 aa, chain - ## HITS:1 COG:BH2466 KEGG:ns NR:ns ## COG: BH2466 COG1206 # Protein_GI_number: 15615029 # Func_class: J Translation, ribosomal structure and biogenesis # Function: NAD(FAD)-utilizing enzyme possibly involved in translation # Organism: Bacillus halodurans # 7 432 6 431 435 650 73.0 0 MTAGQKVTVIGAGLAGSEAAFQIASQGVPVELYEMRPVRKTPAHITDKFAELVCSNSLRA NGLTNAVGVLKQEMRELNSLILSSADKHAVPAGGALAVDRDGFSGEITDTLRNHPLIEVR TEELKEIPDGITVVASGPLTSPDLSASLQALMGEEYLYFYDAAAPIIEKDSIDMSKVYLA SRYDKGEAAYLNCPMTEAEFDAFYEALITAETAPVKEFEKEIYFEGCMPIEVMAKRGKQT ALYGPMKPVGLINPHTGELPYAVVQLRQDNAAGTLYNLVGFQTHLKWGEQKRVLQMIPGL ENAEFVRYGVMHRNTFINSPRLLKPTYQFKNRDNLFFAGQMTGVEGYVESAASGLIAGIN AGRLAQGLDCLQFPLETALGSMAQYITTADTKHFQPMNANFGLFPPLGEKIRNKKMKYEK LAERAIETIQNFSQNTVQSTCK >gi|333605762|gb|AFDH01000077.1| GENE 9 7518 - 9614 1443 698 aa, chain - ## HITS:1 COG:BH2467_1 KEGG:ns NR:ns ## COG: BH2467_1 COG0550 # Protein_GI_number: 15615030 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Bacillus halodurans # 1 551 1 550 550 785 71.0 0 MADSLVIVESPAKAKTIGKYLGSKYIVKASMGHIRDLPKSQIGVEVERDFEPKYITIRGK GSVLKELKDASKKVKKVYLAADPDREGEAIAWHLAHYLELNDTDNCRVVFNEITKQAVKD AFKTPRPINIDLVNAQQARRILDRLVGYKISPLLWKKVKKGLSAGRVQSVAVKLIMDREN EIKAFVPEEYWTITAMLEAGKAHFEAKFYGMDGAKKELGSEEEVQAVLKAIEGAPFIVKE VKEKERLRNPSPPFITSSLQQEAARKLNFRAAKTMSVAQQLYEGIDLGKEGTVGLITYMR TDSTRISPVAQEEAKEYILGKYGESFYPETPRVYTKKGSNTQDAHEGIRPSSVTRDPDSV KEFLSRDQFRLYKLVWERFVASQMSSAVLDTMTIDLNVGNTVFRAVGSKLKFPGFMKVYV EGNDDGTTEEDKLLPPLKSGDQVVSDEIQPKQHFTQPPPRYTEARLVRALEELGIGRPST YAPTLETIQKRGYVAIEEKKFVPTELGELVIQLMSEFFPEILDVEFTAQMEEELDHVGEG KENWVKVLDEFYSSFEKRLEFAEEEMKEIEIQDEVSDEICEKCGKHLVYKMGRFGKFLAC SGFPDCRNTKPIVKDIGVTCPKCKEGKVVERRSKKGRIFYGCDHYPECDFVSWDKPVAQP CPNCGSMMIEKRTKTSVNHQCVECGFKEEVKDEANDEG >gi|333605762|gb|AFDH01000077.1| GENE 10 9685 - 10797 634 370 aa, chain - ## HITS:1 COG:HI0985 KEGG:ns NR:ns ## COG: HI0985 COG0758 # Protein_GI_number: 16272923 # Func_class: L Replication, recombination and repair; U Intracellular trafficking, secretion, and vesicular transport # Function: Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake # Organism: Haemophilus influenzae # 7 338 8 342 373 199 37.0 8e-51 MENRSVLIGLHGITGVGWKTIDLLVRSCSDLKDLLLWSAGEYARLGLPAARIQRLIDELT PFKIEASLEKYESLGIGILTRFDPGYPRLLEETAQPPWVLYCRGRQEVLQRPALAVVGTR TPTAYGRKAARELSLALSAAGFVVVSGLARGIDAEAHHGAKDGAGGTVAVLGVPPDRIYP PEHTRLHEEIIACGGIVVSEYPLGTVPHPGLFPMRNRVIAGVSLGVIVVEAAERSGSLIT ADLALEESRDVFAVPGPIHSPKSRGALSLIKQGAKMVTDPRDVYEEYMHLMSSLSGQLGV SAQQASMPSLERQLTEDEAILYRLLSSVPVPIDVLLEQTQFTFGHLHSVLISLLLKKVIA ELPGSSYVSI >gi|333605762|gb|AFDH01000077.1| GENE 11 10920 - 11852 928 310 aa, chain - ## HITS:1 COG:BH2469 KEGG:ns NR:ns ## COG: BH2469 COG0074 # Protein_GI_number: 15615032 # Func_class: C Energy production and conversion # Function: Succinyl-CoA synthetase, alpha subunit # Organism: Bacillus halodurans # 1 310 1 301 302 442 77.0 1e-124 MSILIDKNTKVITQNMTGKTGMFHTLGGLEYGTQMVAGAVPGKGGTQVDFTLENGSTVTL PVYNTVQEAKDATGATASVIYVPPAFAADSIMEAVDADLDLVICITEGIPVLDMVKVARY MEGKRTRLIGPNCPGVITPGECKIGIMPGYIHTPGHVGVVSRSGTLTYEAVHQLTTRGIG QSSAVGIGGDPVKGSEFIDILRLFNEDPDTYAVIMIGEIGGSAEEEAAEWIKANMTKPVV GFIGGKTAPPGKRMGHAGAIISGGKGTAAEKVATLEACGIRVAATPSEMGSTLVSVLEEK GLLEKCITKK >gi|333605762|gb|AFDH01000077.1| GENE 12 11915 - 13075 1386 386 aa, chain - ## HITS:1 COG:BH2470 KEGG:ns NR:ns ## COG: BH2470 COG0045 # Protein_GI_number: 15615033 # Func_class: C Energy production and conversion # Function: Succinyl-CoA synthetase, beta subunit # Organism: Bacillus halodurans # 1 386 1 386 386 610 83.0 1e-174 MNIHEYQGKEVLKQYGVVVPQGKVAFSVDEAVEAAKELGTQVVVVKAQIHAGGRGKAGGV KVAKNLDEVRTYAEQILGKVLVTHQTGPEGKEVKRLLIEQGCDIKKEYYIGVVVDRGTGR VTMMASEEGGMDIEEVAANTPEKIFKEIVDPAIGLQAFQARKLAYAIKIPQELVNKAVKF MLALYTAFVEKDCSIAEINPLVVTGDGNVMALDAKLNFDSNALFRHKDILDLRDLEEEDE KEIEASKYDLSYIALDGNIGCMVNGAGLAMATMDIIKHYGGDPANFLDVGGGATKEKVTE AFKIILSDSKVKGIFVNIFGGIMRCDIIAEGVVAAAKELGLDRPLVVRLEGTNVDLGKKI LNESGLNIVSADSMADGAQKIVALVK >gi|333605762|gb|AFDH01000077.1| GENE 13 13387 - 13647 301 86 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|167463749|ref|ZP_02328838.1| ## NR: gi|167463749|ref|ZP_02328838.1| hypothetical protein Plarl_14529 [Paenibacillus larvae subsp. larvae BRL-230010] # 1 86 1 86 86 110 65.0 3e-23 MQDKPYFCPNCRSNRVKFSLMTSYSQPFVKDALTGVVTESSEANAIAESEPTIQCQVCSF VGNEMRFVKQAEREPRTVTQVNPTYV >gi|333605762|gb|AFDH01000077.1| GENE 14 13812 - 15407 916 531 aa, chain + ## HITS:1 COG:alr4088 KEGG:ns NR:ns ## COG: alr4088 COG0606 # Protein_GI_number: 17231580 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted ATPase with chaperone activity # Organism: Nostoc sp. PCC 7120 # 1 527 1 507 509 466 48.0 1e-131 MYGKVTGACLHGIDGICIEVEIDIANGLPQINVVGLPDTAVRESIDRVRSAIKNCGFQFP LERITVNLAPADLRKEGASFDLAIAAGILLTSGQIQLPGIDRCLLVGELALDGGLRPVPG VLSMVDAARRRGIRRVLLPLANVDEARLISGTEVQGISSLSELGDPCNRGVTADGASLSE TGSASVSFPCETLPARPGVPAEMHAPVAASDDYADVIGQHHAKRAIMIAAAGMHNLLFIG PPGTGKTMLARRIPGILPPLSDEEALEVTKIYSVSGKLGTISRFMRQRPYRSPHHTVSAA GLIGGGSVPKPGEVSLAHQGVLFLDELPEFSRSVLEVLRQPLEDRKVTIGRARASFTFPS GFLLAASMNPCQCGFYGTETAEQSCICSPLKIRQYRARISGPLLDRIDLHVEVPRLDYTA MTDKRPSLSSEDMRRQVFAAHRRQQLRYEGSFMRFNAELGGKWLRKYCVLPPEAEDLLRQ TFDRLRLSARAHDRILKIARTIADLETSDGITYGHIAEAIQYRNLDKSYSL >gi|333605762|gb|AFDH01000077.1| GENE 15 15733 - 16107 305 124 aa, chain - ## HITS:1 COG:CAC1763 KEGG:ns NR:ns ## COG: CAC1763 COG0792 # Protein_GI_number: 15895040 # Func_class: L Replication, recombination and repair # Function: Predicted endonuclease distantly related to archaeal Holliday junction resolvase # Organism: Clostridium acetobutylicum # 9 124 6 120 122 81 39.0 4e-16 MAFSPLSRKDLGRYGEQRAEEYLAAQGYGIAARNWRCRSGEIDLIAEADDQLVFVEVRTR RLTGRFGTAKESVDARKQLKVRQIAQIYLYAAKQSERKVRFDVITVELTPEGEFNRLEHL TGAF >gi|333605762|gb|AFDH01000077.1| GENE 16 16109 - 16483 335 124 aa, chain - ## HITS:1 COG:BS_ylqH KEGG:ns NR:ns ## COG: BS_ylqH COG2257 # Protein_GI_number: 16078671 # Func_class: S Function unknown # Function: Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB # Organism: Bacillus subtilis # 31 117 7 93 93 84 50.0 6e-17 MNFSAKRGQTPSNSGPSKETAEGEGAGTHAIRKAVALKYAPGEQKAPTVIAKGKGKVAEA IVEKARESGVPVQEDASLVEVLSKLELDQEIPGELYQLVAEVLSYIYRSDNRMKEMRDSQ RKGL >gi|333605762|gb|AFDH01000077.1| GENE 17 16480 - 17208 500 242 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_3472 NR:ns ## KEGG: Pjdr2_3472 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 48 241 446 635 636 171 51.0 2e-41 QRPAAGSGWVRELLRAVGVDHESRLLRQPGNPAHAGGAHLAAAGEGQAAALKADSAETLK SLLLQLTAADDLPAPIRESAQQALQQITGQQLLLSPDRSGVFTHVTLFVPLLSADGQPTA AVHIQSRKGKRGELDAENCRLLFDLQMKSMGHTLVDVGVMNRMVSLQVFNDEPIIGELLN GSKEEIAAALDKLGYQFLSMKTAEYPKASGSFTGGDSGSSLSAVMMDTIVPGEAYRGVDL RI Prediction of potential genes in microbial genomes Time: Sun Jul 17 09:31:59 2011 Seq name: gi|333605728|gb|AFDH01000078.1| Paenibacillus sp. HGF7 contig00095, whole genome shotgun sequence Length of sequence - 33575 bp Number of predicted genes - 33, with homology - 32 Number of transcription units - 8, operones - 7 average op.length - 4.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 51/0.000 - CDS 1 - 1936 1018 ## COG0480 Translation elongation factors (GTPases) 2 1 Op 2 56/0.000 - CDS 1972 - 2442 744 ## PROTEIN SUPPORTED gi|15612693|ref|NP_240996.1| 30S ribosomal protein S7 3 1 Op 3 4/0.000 - CDS 2485 - 2904 682 ## PROTEIN SUPPORTED gi|169190353|ref|ZP_02850325.1| ribosomal protein S12 - Prom 3002 - 3061 2.4 4 1 Op 4 4/0.000 - CDS 3063 - 3314 240 ## PROTEIN SUPPORTED gi|16077177|ref|NP_387990.1| putative ribosomal protein L7Ae-like - Prom 3362 - 3421 6.0 - Term 3390 - 3449 6.1 5 2 Op 1 58/0.000 - CDS 3473 - 7090 2879 ## COG0086 DNA-directed RNA polymerase, beta' subunit/160 kD subunit 6 2 Op 2 . - CDS 7172 - 10708 866 ## PROTEIN SUPPORTED gi|163796927|ref|ZP_02190884.1| 30S ribosomal protein S12 - Prom 10735 - 10794 2.4 7 3 Op 1 . - CDS 10824 - 11057 62 ## 8 3 Op 2 3/0.000 - CDS 11128 - 11727 167 ## PROTEIN SUPPORTED gi|225874212|ref|YP_002755671.1| ribosomal protein L11 methyltransferase - Prom 11773 - 11832 4.2 - Term 11810 - 11871 18.0 9 4 Op 1 47/0.000 - CDS 11878 - 12243 509 ## PROTEIN SUPPORTED gi|192813605|ref|ZP_03042265.1| ribosomal protein L7/L12 10 4 Op 2 43/0.000 - CDS 12289 - 12798 635 ## PROTEIN SUPPORTED gi|167465653|ref|ZP_02330742.1| 50S ribosomal protein L10 - Prom 12921 - 12980 4.7 - Term 13020 - 13062 -1.0 11 4 Op 3 55/0.000 - CDS 13070 - 13762 1015 ## PROTEIN SUPPORTED gi|169190360|ref|ZP_02850332.1| ribosomal protein L1 12 4 Op 4 45/0.000 - CDS 13840 - 14265 670 ## PROTEIN SUPPORTED gi|169190361|ref|ZP_02850333.1| ribosomal protein L11 - Term 14340 - 14384 -0.1 13 4 Op 5 46/0.000 - CDS 14445 - 14978 513 ## COG0250 Transcription antiterminator 14 4 Op 6 1/0.000 - CDS 15001 - 15213 251 ## COG0690 Preprotein translocase subunit SecE 15 4 Op 7 . - CDS 15232 - 15381 237 ## PROTEIN SUPPORTED gi|169190364|ref|ZP_02850336.1| ribosomal protein L33 - Prom 15442 - 15501 5.3 - Term 15594 - 15634 2.7 16 5 Op 1 5/0.000 - CDS 15637 - 16281 610 ## COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog - Prom 16328 - 16387 7.1 17 5 Op 2 6/0.000 - CDS 16411 - 16923 434 ## COG3688 Predicted RNA-binding protein containing a PIN domain 18 5 Op 3 7/0.000 - CDS 16930 - 17667 773 ## PROTEIN SUPPORTED gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 19 5 Op 4 8/0.000 - CDS 17694 - 18287 479 ## COG1939 Uncharacterized protein conserved in bacteria 20 5 Op 5 4/0.000 - CDS 18272 - 19669 1421 ## COG0215 Cysteinyl-tRNA synthetase 21 5 Op 6 4/0.000 - CDS 19650 - 20321 512 ## COG1045 Serine acetyltransferase - Prom 20345 - 20404 3.2 22 5 Op 7 3/0.000 - CDS 20695 - 22149 1310 ## COG0008 Glutamyl- and glutaminyl-tRNA synthetases 23 5 Op 8 19/0.000 - CDS 22202 - 22687 548 ## COG0245 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 24 5 Op 9 4/0.000 - CDS 22692 - 23393 415 ## PROTEIN SUPPORTED gi|163764767|ref|ZP_02171821.1| ribosomal protein L15 25 5 Op 10 . - CDS 23493 - 24539 940 ## PROTEIN SUPPORTED gi|163764768|ref|ZP_02171822.1| ribosomal protein S5 - Prom 24586 - 24645 2.4 + Prom 24616 - 24675 4.1 26 6 Tu 1 . + CDS 24702 - 25097 393 ## GYMC10_5776 hypothetical protein + Term 25113 - 25163 1.5 - Term 25181 - 25218 4.6 27 7 Op 1 . - CDS 25223 - 25969 480 ## COG1183 Phosphatidylserine synthase - Prom 25989 - 26048 4.1 28 7 Op 2 7/0.000 - CDS 26056 - 27135 1090 ## PROTEIN SUPPORTED gi|163764769|ref|ZP_02171823.1| ribosomal protein L18 29 7 Op 3 6/0.000 - CDS 27249 - 28616 957 ## COG1066 Predicted ATP-dependent serine protease - Prom 28672 - 28731 4.2 - Term 28715 - 28760 12.1 30 8 Op 1 5/0.000 - CDS 28774 - 31221 3325 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 31 8 Op 2 7/0.000 - CDS 31268 - 32335 1008 ## PROTEIN SUPPORTED gi|163764772|ref|ZP_02171826.1| ribosomal protein L5 32 8 Op 3 5/0.000 - CDS 32384 - 32902 502 ## PROTEIN SUPPORTED gi|163764773|ref|ZP_02171827.1| ribosomal protein L24 33 8 Op 4 . - CDS 32915 - 33376 396 ## PROTEIN SUPPORTED gi|163764774|ref|ZP_02171828.1| ribosomal protein L14 - Prom 33430 - 33489 6.2 Predicted protein(s) >gi|333605728|gb|AFDH01000078.1| GENE 1 1 - 1936 1018 645 aa, chain - ## HITS:1 COG:BS_fus KEGG:ns NR:ns ## COG: BS_fus COG0480 # Protein_GI_number: 16077180 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factors (GTPases) # Organism: Bacillus subtilis # 1 645 1 646 692 962 73.0 0 MAREFSLKDTRNIGIMAHIDAGKTTTTERILYYTGRTHKIGEVHEGAATMDWMEQEQERG ITITSAATTAAWRGHRINIIDTPGHVDFTVEVERSLRVLDGAVGVFSAKEGVEPQSETVW RQADKYSVPRIAYVNKMDIIGADFLGVVDSMRDKLGANAVAIQLPIGAENDFVGIIDIVE EKAILYKDDLGKEVEDIEIPAEYKDKVAELRMELVEKVAELDEELTMKYLEGEEITVAEL KAALRKGVVSVKIFPVICGSSYRNKGVQPMLDAVIDYLPAPIDVPDIQGVLEDGTETTRK SSDSEPFAALAFKIMTDPYVGKLTFFRVYSGVLQSGSYVLNATKGKRERVGRILQMHANS RQEISEVYSGDIAAAVGLKDTGTGDTLCDEKNAVILESMNFPEPVIEIAVEPKTKADQDK MGVALSKLTEEDPTLRASTNEETGQTILAGMGELHLEIIVDRMRREFKVDTNVGKPQVAY RETFKSGAKVEGKFVRQSGGRGQYGHCWVEFQPLEPGSGFVFESKIVGGSIPREYIAPIQ AGIEESMKNGVIAGFPVVDIKATVVDGSYHDVDSNEMAFKIAGSMALKAAKEKCNPALLE PIMKVEVTVPEEYMGDVMGDLNSRRGRIEGMDSRSGAQVIRAKVP >gi|333605728|gb|AFDH01000078.1| GENE 2 1972 - 2442 744 156 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15612693|ref|NP_240996.1| 30S ribosomal protein S7 [Bacillus halodurans C-125] # 1 156 1 156 156 291 89 5e-78 MPRKGPVTRRDVLPDPIYNSKLVTRLINRIMIDGKRGVAQSILYNAFELVQERTGKEPME VFEQAIKNIMPVLEVKSRRVGGANYQVPIEVKPERRTTLGLRWLVNYSRLRGEKTMEERL AFEIIDASNNTGSSVKKREDVHKMAEANKAFAHYRW >gi|333605728|gb|AFDH01000078.1| GENE 3 2485 - 2904 682 139 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169190353|ref|ZP_02850325.1| ribosomal protein S12 [Paenibacillus sp. JDR-2] # 1 139 1 139 139 267 95 7e-71 MPTINQLVRKGRQAKVVKSKSPALQRGFNALKRESTEISAPQKRGVCTRVGTMTPKKPNS ALRKYARVRLTNRVEVTAYIPGIGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGALDTSGV NNRMQARSKYGTKRPKAKK >gi|333605728|gb|AFDH01000078.1| GENE 4 3063 - 3314 240 83 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|16077177|ref|NP_387990.1| putative ribosomal protein L7Ae-like [Bacillus subtilis subsp. subtilis str. 168] # 1 81 1 81 82 97 56 1e-19 MTYDKVKQASKLSVGTKQATKSVELGQALEVIVAKDADPRLTTKIVNLCSKSGVEVTYVD SMKLLGKACGIEVGAAVAAIVDK >gi|333605728|gb|AFDH01000078.1| GENE 5 3473 - 7090 2879 1205 aa, chain - ## HITS:1 COG:BH0127 KEGG:ns NR:ns ## COG: BH0127 COG0086 # Protein_GI_number: 15612690 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, beta' subunit/160 kD subunit # Organism: Bacillus halodurans # 1 1205 2 1206 1206 1847 75.0 0 MDVNNFEFMKIGLASPEKIRSWSRGEVKKPETINYRTLKPEKEGLFCEKIFGPTKDWECH CGKYKRVRYKGVVCDRCGVEVTRQKVRRERMGHIELAAPVSHIWYFKGIPSRMGLALDMS PRSLEEIIYFASYVVTDPGDTPLEKKQLLSEKEYRSYREKYGYAFQAGMGAEAVKKLLQD IDIDKDVESLKEELKTAQGQRRNRAIKRLEVMEAFRNSKNRPDWMVLDVLPVIPPELRPM VQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVQNEKRMLQEAVDALIDNGRR GRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPSLKMYQCGLPKEM ALELFKPFVMKELVNKGLAHNIKSAKRKVERVSPEVWDVLEEVIKEHPVLLNRAPTLHRL GIQAFEPILVEGRAIKLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLAAGNILN PKDGKPVVTPSQDMVLGSFYLTTDNKYGRGANLIFRSVNEAVSAYQNGTAELHARVAIPA KVLNKKNFTEAQQNAYLITTIGKIIFNEIFPDDFPYINDATKANLLNGPSDDYFVFEKGS NIRARMEELPEAKAVGKDYLGSIIAECFRNYHTTRTSVILDKIKELGFTYSTKAGITVAV ADVVVPNEKKKILEDSEEKVRTVTNQYRRGLITDDERYDRVIAIWSKTKDEITDILMKSL DKYNSINMMVESKARGNKSQITQLGGMRGLMANPSGKIIELPIKSNFREGLTVLEYFIST HGARKGLADTALRTADSGYLTRRLVDVAQDVIVREDDCGTDKGFIVSKIQDGKEVIEDLF DRIEGRYAFETIRHPETGEVIVNRNELIEANIANAIIDANIERLQIRSVLSCRSRHGVCK KCYGRNLATGQHVEIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQELF EARNPKGQAIISEIDGLVKEIREAKDRREIEVQGEAESRVYAVPYGSRVRAIVGQTIEAG DELTEGSIDPKEMLRIKGIRGVQNYILQEVQRVYRNQGVEINDKHVEVMIRQMLRKIRIV DAGDTTLLPGSFVDMHEYEEANKVALFADKEPAVAKPILLGITKASLETDSFLSAASFQE TTRVLTDAAIKGKVDQLLGLKENVIIGKLIPAGTGMTRYRNIRVVDPNQEPSEEENTEKE AVSVE >gi|333605728|gb|AFDH01000078.1| GENE 6 7172 - 10708 866 1178 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163796927|ref|ZP_02190884.1| 30S ribosomal protein S12 [alpha proteobacterium BAL199] # 887 1142 1078 1387 1392 338 56 3e-92 MAGHLVQFGRRKRRTYARINEVLDIPNLIEIQQKSYEWFLDEGLREMFLDISPIQDFTGN LVLEFIDYSLGEPKYSVDESKERDVTYAAPLRVKVRLINKETGEVKEQEVFMGDFPIMTE TGTFIINGAERVIVSQLVRSPSVYYSTKVDKNGKKTYTATVIPNRGAWLELETDAKDIIY VRIDRTRKIPVTVLLRALGFGTDAEILDLLGDNEYIRNTLDKDNTDSTDKALIEIYERLR PGEPPTLDNARSLLVARFFDPKRYDLANVGRYKINKKLHIKNRLFNQRLAETLADPETGE IVAEAGQLLDRRLLDEVLPFLEKKIGFKDYSVPNGVAGEEIIPVQTIDVYSPIEDGKVVK VISNAVIDKSVKNITPADIISSINYFINLLHGIGNTDDIDHLGNRRLRSVGELLQNQFRI GLSRMERVVRERMSIQDANVITPQALINIRPVIAAIKEFFGSSQLSQFMDQTNPLAELTH KRRLSALGPGGLTRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLSTFARINEYGF IEAPYRHVDPKTGVVTEEIVYMTADEEDNYVVAQANAELSEEGTFVNDSVIVRYKDDILT LPKERVDYMDVSPKQVVSVATALIPFLENDDSNRALMGSNMQRQAVPLLIPKAPLVGTGM EHKSAKDSGVCIVAKHDGIIEKVAGNEIWLRRQELVDGKLVNGNLIKHKLHKFMRSNQGT CINQRPIVQKGQLVKAGDILADGPSTEQGELALGRNVVVAFMTWEGYNYEDAILLSERLV KEDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALKNLDERGIIRVGAEIGAGDIL VGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGTDGIVVDVKVFTRENGDELP PGVNQLVRVYIAQKRKISEGDKMAGRHGNKGVIARILPEEDMPFMPDGTPVEVVLNPLGV PSRMNIGQVLEVHLGMASRALGIHVATPVFDGAREYDVFDTMEEAGMQRNGKTKLYDGRT GDAFEREVTVGVMYMIKLAHMVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWA LEAYGAAYTLQEILTVKSDDVVGRVKTYESIVKGENVPEPGVPESFKVLIKELQSLGMDV KILSGDEEEIEMKELDDEEDTTSDKLNLNLEGAEIGVE >gi|333605728|gb|AFDH01000078.1| GENE 7 10824 - 11057 62 77 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGLMSFVKENVKHFFWREMNKISNVEYNVEILGNSNKIVVLVITMRINKKNLHPLQSLLR TGSLTRSEMSNLSVRPA >gi|333605728|gb|AFDH01000078.1| GENE 8 11128 - 11727 167 199 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|225874212|ref|YP_002755671.1| ribosomal protein L11 methyltransferase [Acidobacterium capsulatum ATCC 51196] # 19 175 84 266 294 68 27 4e-11 MADHYYTQKPTVKHDVREIEFQVGERKLRLMTDAGVFSKNEVDFGSRLLIETMALPAKAH VLDVGCGYGPIGLSAAFKYPAGRVTMVDINERAVELSRQNAERNGIRNVTVLQSDKLEAV KTEKFDVVLTNPPIRAGKQTVHAIFEEACECLNPGGALWVVIQKKQGSPSAFAKMEELFG EAEEVTKDKGYRILRAFKK >gi|333605728|gb|AFDH01000078.1| GENE 9 11878 - 12243 509 121 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|192813605|ref|ZP_03042265.1| ribosomal protein L7/L12 [Geobacillus sp. Y412MC10] # 1 121 1 120 120 200 89 9e-51 MSNEQILEAIKGMTVLELNDLVKAIEEEFGVTAAAPVAVMGGAAGGAEAAEQSEFDVILN NAGASKINVIKVVREITGLGLKEAKDLVDNAPKPIKEKVGKEEAEAVKAKLEEAGASIEV K >gi|333605728|gb|AFDH01000078.1| GENE 10 12289 - 12798 635 169 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|167465653|ref|ZP_02330742.1| 50S ribosomal protein L10 [Paenibacillus larvae subsp. larvae BRL-230010] # 1 169 1 169 171 249 76 2e-65 MANAKILAEKEQIVSDLSEKLRASSCTIVTDYRGLNVAQVTELRKQLREAGVEFQVLKNS MVRRATATAELTELDAHLTGPTAIAFSKDDVVAAAKILNNFAKKNESLSIKAGVVEGKVV DVAQIKALADLPSREGLLSMLLSVLQAPVRNFALAVKAVAEKQESGAEA >gi|333605728|gb|AFDH01000078.1| GENE 11 13070 - 13762 1015 230 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169190360|ref|ZP_02850332.1| ribosomal protein L1 [Paenibacillus sp. JDR-2] # 1 230 1 230 230 395 85 1e-109 MAKHGKKYNEVAKQVTADALYEPAEAIELVKKTAPAKFDETVDIAVRLGVDPRKQDQAVR GVVVLPHGTGKTKRVLVFAKGDKAKEAEAAGADFVGDQDMINKIQQGWFEFDVCVATPDM MSEVGKLGRLLGGKGLMPNPKAGTVTFDVTKAVQEIKAGKIEYRLDKAGQIHAPLGKVSF DADKLSENFKALIDALLRAKPAAAKGVYLKSVAISSTMGPSVRVNLQSFR >gi|333605728|gb|AFDH01000078.1| GENE 12 13840 - 14265 670 141 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169190361|ref|ZP_02850333.1| ribosomal protein L11 [Paenibacillus sp. JDR-2] # 1 141 1 141 141 262 93 2e-69 MAKKVIKMVKLQVPAGKANPAPPIGPALGQAGVNIMAFCKEFNAKTADQAGLIIPVVITV FEDRSFTFETKTPPAAVLLRIAAGVEKGSGEPNKKKVATVKRAKVREIAETKMPDLNAAT VEAAMLMVEGTARSMGITIED >gi|333605728|gb|AFDH01000078.1| GENE 13 14445 - 14978 513 177 aa, chain - ## HITS:1 COG:BH0118 KEGG:ns NR:ns ## COG: BH0118 COG0250 # Protein_GI_number: 15612681 # Func_class: K Transcription # Function: Transcription antiterminator # Organism: Bacillus halodurans # 1 177 1 178 178 260 78.0 9e-70 MEKRWYVVHTYSGYENKVKANLEKRVESMDMADKIFRVLVPMEEELVNKDGKKKTVMRKV YPGYVLVEMIQTDDSWYVVRNTPGVTGFVGSTGSGSKPTPLLPEEVESILKHMGMEEPKP KIDFDLKETVRVKVGPFANFVGTVEEIIADKSKLKVHVNMFGRETPLELEFHQVEKL >gi|333605728|gb|AFDH01000078.1| GENE 14 15001 - 15213 251 70 aa, chain - ## HITS:1 COG:BH0117 KEGG:ns NR:ns ## COG: BH0117 COG0690 # Protein_GI_number: 15612680 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecE # Organism: Bacillus halodurans # 7 66 1 60 64 57 51.0 5e-09 MAFLAKMKQGFGSSFSFFGESWSELKKVKWPTRKEMISYTTVTLVTVAFVTVYFFLLDLG ISELLRLVFK >gi|333605728|gb|AFDH01000078.1| GENE 15 15232 - 15381 237 49 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169190364|ref|ZP_02850336.1| ribosomal protein L33 [Paenibacillus sp. JDR-2] # 1 49 1 49 49 95 81 3e-19 MRVVMTLACTNCKQRNYTSNKNKRNHPDRMEFKKFCKYCNEHTAHRETR >gi|333605728|gb|AFDH01000078.1| GENE 16 15637 - 16281 610 214 aa, chain - ## HITS:1 COG:BH0115 KEGG:ns NR:ns ## COG: BH0115 COG1595 # Protein_GI_number: 15612678 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog # Organism: Bacillus halodurans # 1 212 1 213 217 312 78.0 4e-85 MSVDLKELRMTDYDLKTDEDIVDAVHCGNSDALEYLINKYRNFVRAKARSYFLIGADRED IVQEGMIGLYKSIRDFRGDKLSSFKAFAELCITRQIITAIKTATRQKHIPLNSYVSLDKP IYDEDSDRTLLDVICGSKVTDPEELIINQEEFSGLEDKMGEILSDLERRVLMLYLDGRSY QEIAVDLDRHVKSIDNALQRVKRKLERYLEVRDL >gi|333605728|gb|AFDH01000078.1| GENE 17 16411 - 16923 434 170 aa, chain - ## HITS:1 COG:BH0114 KEGG:ns NR:ns ## COG: BH0114 COG3688 # Protein_GI_number: 15612677 # Func_class: R General function prediction only # Function: Predicted RNA-binding protein containing a PIN domain # Organism: Bacillus halodurans # 1 169 1 168 170 169 56.0 2e-42 MKEFLIVDGYNIIGAWPELKQLRDRSLEEARDRLITILAEYQSFSGVKVYLVFDAYQVPG LGKTYVQSRLSVLYTKEKETADELIERLVTQLTGRRRQIYVATSDMTEQHVIFGKGALRL PASELFVKIKQSRTEVRKRIREEAESGRNTFDSKLNEEMREIFEKWRRGK >gi|333605728|gb|AFDH01000078.1| GENE 18 16930 - 17667 773 245 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 [Bacillus selenitireducens MLS10] # 2 242 6 246 255 302 58 2e-81 MEEYIGGKHSVLEALRSGRTIHKIWLSESAQKQLAQPVAAEAKKLGVIVQTADKRKLDQL APDLQHQGVVAQVAAYDYASVDDILARAERKGEDPFILILDEIEDPHNLGSILRTADCTG VHGVIIPKRRSVGLTATVSKTSAGAVEYVPVARVTNISQTIADLKERGVWVAGTDVTAAD DVYRSNFKMPLALVIGNEGRGVGRLIKESCDFLVKLPMHGRVNSLNASVAAGVLMYEVVR QRTTG >gi|333605728|gb|AFDH01000078.1| GENE 19 17694 - 18287 479 197 aa, chain - ## HITS:1 COG:CAC3156 KEGG:ns NR:ns ## COG: CAC3156 COG1939 # Protein_GI_number: 15896404 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 27 138 18 130 141 121 53.0 1e-27 MAPEMNLSDKLNPQLFRYPPSQKPELLNPLVLAYIGDAVYEMFIRQYVISMPSQRPNHLH RAATRYVSAKAQSKALQALMPLLTEEEAGIVKRGRNAKSGSTAKNADVLEYRHSTAFESL IGYLYYKQAYERLNYIMEASLAPEKIAALPASESEAGTASNQPGDTDTGTGRVQSDVSGG PEAAGADPEAPSDAHKL >gi|333605728|gb|AFDH01000078.1| GENE 20 18272 - 19669 1421 465 aa, chain - ## HITS:1 COG:BH0111 KEGG:ns NR:ns ## COG: BH0111 COG0215 # Protein_GI_number: 15612674 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Cysteinyl-tRNA synthetase # Organism: Bacillus halodurans # 1 464 1 464 466 568 61.0 1e-162 MTLRMFNTMTREKEEFKPLEPGKVKMYVCGPTVYNYIHIGNGRPAIFFDVVRRYLTYVGY EVTYVVNFTDVDDKLIRKAEETGETVQELADRFIAAYMEDMKTLRIEPATIHPRVTDNME IIITFINSLVQQGFAYENGGDVYYRTSRFKEYGKLSHQNLDELQYGIRIEVDERKENPQD FVLWKAAKPGEVFWSSPWGNGRPGWHIECSALVHKYLGESIDIHGGGVDLTFPHHECEIA QTEAITGKPMAKYWLHNEFLNIDNEKMSKSLGNGVLIREIAKKIKPETLRFFMLSSHYRN PLNFSEDGLTQAGNGLDRIQNCVTNLKHRLGIAQEDALDDQVEARVKEIEAQFISKMDDD FNTPDAITAVFDLVTEANRVLQQERVSAATLRLIMGRFRNFDSVLGILAREEEELLDEEI EGLIEERNEARRAKNWARADEIRDLLTEKGIYLEDTPQGIRWRRK >gi|333605728|gb|AFDH01000078.1| GENE 21 19650 - 20321 512 223 aa, chain - ## HITS:1 COG:BH0110 KEGG:ns NR:ns ## COG: BH0110 COG1045 # Protein_GI_number: 15612673 # Func_class: E Amino acid transport and metabolism # Function: Serine acetyltransferase # Organism: Bacillus halodurans # 1 212 4 216 229 295 66.0 7e-80 MWKTIRSDIKAVFDNDPAARSWFEVVFTYSGLHAIWAHRIAHWLYTRKLFAAARIISQFS RFMTGIEIHPGATIGERLFIDHGMGVVIGETCEIGNDVILYQGVTLGGTGKEKGKRHPTI GSKVVISSGAKILGSFKVGDNAMIGANAVVLKEVPANSTVVGIPGKIVKRDGIRVNRLDH GNVPDPVLDLCRTLQVQIDELREQLEEEKIKNGGVREHDTQNV >gi|333605728|gb|AFDH01000078.1| GENE 22 20695 - 22149 1310 484 aa, chain - ## HITS:1 COG:BH0109 KEGG:ns NR:ns ## COG: BH0109 COG0008 # Protein_GI_number: 15612672 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glutamyl- and glutaminyl-tRNA synthetases # Organism: Bacillus halodurans # 1 484 1 484 485 611 62.0 1e-174 MSTPLRVRYAPSPTGHLHIGGARTALFDYLLARKNGGQFVVRFEDTDQTRHVESGVQNQL DGLSWLGLKWDESVDIGGPYAPYRQMERLGLYQPFIDQLLNERNAYHCYCTEQELERERE EQEARGETPQYSGRCRHLTAEQKAEFEAEGRKPSIRFHVPKDKIIAFKDKVREEVEFETN GIGDFIIVRPDGIPTYNFAVILDDHLMKISLVIRGEEHLTNTPRQIMLYEALGLPVPDFA HLSLILNPDRKKMSKRDESIIQFVQQYSELGYLPEAVVNFIALLGWSPGGEVEMFTLEEL VEQFDLDRVSKSPAVFDMDKLNWMNNHYIKQAPLERIAGLAVPHLQKAGLIPAELSEDQQ RWATELVGLYQEQLRYAAEIVDLAELFFREKLAFDDEAAALLAEEHVPAVVQSFLKQVES ADSLAPENVQKLLKAVQAETGYKGKQLFMSIRVALTGQMHGRDLNMTIHLLGREKVQERL RALL >gi|333605728|gb|AFDH01000078.1| GENE 23 22202 - 22687 548 161 aa, chain - ## HITS:1 COG:BH0108 KEGG:ns NR:ns ## COG: BH0108 COG0245 # Protein_GI_number: 15612671 # Func_class: I Lipid transport and metabolism # Function: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase # Organism: Bacillus halodurans # 1 157 1 157 157 232 76.0 3e-61 MIRVGQGFDVHQLAEGRLCIIGGVTIPYEKGLLGHSDADVLLHAITDAILGALGLGDIGK HFPDTAAEFKDADSLVLLKRVWSLARERGYRLGNVDSTIIAQKPKMAPYIPQMAEIIARA LDAELEQVNVKATTTEQLGFTGRGEGIAAQSVVCLIKGVLS >gi|333605728|gb|AFDH01000078.1| GENE 24 22692 - 23393 415 233 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764767|ref|ZP_02171821.1| ribosomal protein L15 [Bacillus selenitireducens MLS10] # 9 230 7 226 234 164 41 7e-40 MQVNKVGVIVVAAGRGSRMRTAESKQYLELAGKPILVHTLELFEKIARIDSVVLVTGEED VPRCESYAARYGLHKVSRVIAGGAERQDSVRSGLEALGADTQWVLVHDGVRPLVTEEQVV ACLDKAIDTGAAVLAVPVKDTIKVVSEDGQIMSTPDRKSLWAIQTPQAFRFSLLKEAHEE AVRDGFLGTDDAMLVERAGHTVHVVEGDYANIKITTPEDLPWAEWLLGNRRGE >gi|333605728|gb|AFDH01000078.1| GENE 25 23493 - 24539 940 348 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764768|ref|ZP_02171822.1| ribosomal protein S5 [Bacillus selenitireducens MLS10] # 4 348 34 397 397 366 54 1e-101 MKWIQWIIAVLGGALGYGWSDAIIQLSGINGGAVADYTAAGAGFVGMFIVSWIGMGLILR LVQRGENSLSQMPASDLLPAAFGTIVGLLAAVLVFPALERVHVVLAGMATVLLAVMGGRI GYGKSEEIFELLSSRKDGGSGKGKMPEEHKILDTSVIIDGRIADICKTGFIEGTLVIPEF VLEELQHIADSSDLLKRNRGRRGLDILNKIQKELDVKVLIYEGDFEEISEVDSKLIRLAK VLQGKVITNDYNLNKVCELQGVSVLNINDLANAVKPVVLPGEEILVQVIKDGKEHGQGVA YLDDGTMIVVEGGRDFIGSLLEVMVTSVLQTSAGRMIFAKPKLLEKAQ >gi|333605728|gb|AFDH01000078.1| GENE 26 24702 - 25097 393 131 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_5776 NR:ns ## KEGG: GYMC10_5776 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 131 1 131 131 151 61.0 9e-36 MNALSLKDFQEQVGELLLRHRSLLDVLSKFQQSNAGVNRSVIKSITECGCVEVNAKKQEY SPEMTLDQAKIELQTHLEGQLCEHCMEAISTEIGKHLFYLSALSNLLDVNLEKVLEDESK KCSTLGFFNMS >gi|333605728|gb|AFDH01000078.1| GENE 27 25223 - 25969 480 248 aa, chain - ## HITS:1 COG:Cj1114c KEGG:ns NR:ns ## COG: Cj1114c COG1183 # Protein_GI_number: 15792439 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine synthase # Organism: Campylobacter jejuni # 6 180 11 190 242 123 43.0 3e-28 MITKSLPSLFTVGNLFLGVLAIILVFNERPDTAAVLVIVAMLLDGLDGRVARALNAQSEF GKELDSLSDVISFGVAPAFIMYVVAFGDIRPAAAAWVVTAIFPICGALRLARFNVVAGTP GYFIGLPIPAAGGILATLALFHNELNVYVLLVSTVLLSYLMVSNVKYPNFKKTGIPKAAI WITPIIVIIAVIIGISKPSFISKMIFIPLVIYALYGLKKNVDRLFVLRRRKRKGMETSED LANSKTHL >gi|333605728|gb|AFDH01000078.1| GENE 28 26056 - 27135 1090 359 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764769|ref|ZP_02171823.1| ribosomal protein L18 [Bacillus selenitireducens MLS10] # 13 359 15 360 360 424 64 1e-118 MSKEETKRDVMSQLLQLVAPGTPFRDGLENVLRAKTGALIVVGCTPEVMEIVDGGFSIDC DFTPNYLYELAKMDGAIILNEDAKKILYANTQLIPNSSIPSTETGIRHRTAERVAKQTNK LVVSISQRRNIITLYQGNLRYSLKDIGVILTKANQAIQTMERYKTELDQSLINLGASEFE ELVTLHDVTNAIQRVEMVLRIKNELNRYITELGTEGRLISMQLEELVGNTELEVRLLLKD YVRELSEEKIKDILLGLKRLSSEELLDPHHIIRLLGYPHTNAVSEELVSPRGFRVLNKIP RLPSIIISNLVEKFGRLPHITVATIEELDEVDGIGEVRARAIKEGLRRIQEQVLIDRHI >gi|333605728|gb|AFDH01000078.1| GENE 29 27249 - 28616 957 455 aa, chain - ## HITS:1 COG:BS_sms KEGG:ns NR:ns ## COG: BS_sms COG1066 # Protein_GI_number: 16077155 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted ATP-dependent serine protease # Organism: Bacillus subtilis # 1 454 1 456 458 630 68.0 1e-180 MSKTKTKFICQQCGYETPKWLGKCPGCGAWNSFAEEVETVVKTQGMNSSFLRTKEKPTPI INIESSVEQRVLTDNGELNRVLGGGFVPGSLILVGGDPGIGKSTLLLQTSHSLTKEGRKV LYISGEESIRQTKLRADRLDAVSPNLYVLCETNMEVVEEAIQEVQPDFLVIDSIQTVYHP SVSSAPGTVSQVRECTSHFMRIAKLKNIATVLVGHVTKEGAIAGPRLLEHMVDCVLYFEG ERHHTYRVLRAVKNRFGSTNEIGIFEMRETGLAEVSNPSELFLSERPLGVAGSTVVASME GTRPVLVEIQALVSSTNFPSPRRMATGIDHNRLSLIMAVLEKRVGLFLQSQDAYLNVAGG VKLDEPAVDLAVAISIASSFKEQPTQAYDAVFGEIGLTGEVRGVSRIDQRVKEAQKLGFR RVIMPEKSLKGWTPPKGIEVVGVSTVSEALKAALD >gi|333605728|gb|AFDH01000078.1| GENE 30 28774 - 31221 3325 815 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 1 810 1 815 815 1285 79 0.0 MMFGRFTERAQKVLSLAQEEAVRLGHNNIGTEHILLGLIREGEGIAAKALVALGLGLEKI QDEVESLIGRGQEQPSNIAYTPRAKKVIELSMDEARKLGHTYVGTEHILLGLIREGEGVA ARVLNNLGISLNKARQQVLQLLGSSEVVSSNHGSGNNVNTPTLDSLARDLTAIAKEGNLD PVIGRSKEIERVIQVLSRRTKNNPVLIGEPGVGKTAIAEGLAQKIINNEIPETLKDKRVM TLDMGSVVAGTKYRGEFEDRLKKIMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNIL KPALARGELQCIGATTLDEYRKYIEKDAALERRFQPITVDQPTPEEAIQILHGLRDRYEA HHRVKITDEAIEEAVKLSDRYIPDRFLPDKAIDLIDEASSKVRLHSYTVPPSLKELEQKL ENIRKEKDAAVQSQEFEKAASLRDTEQKLREELDSTKNDWKEKQGRMDTEVTPDDIAQVV ASWTGIPVRKLAEEETERLLKMEDILHNRVIGQEEAVKAVSRAIRRARAGLKDPKRPMGS FIFLGPTGVGKTELARALAESLFGDENAVIRIDMSEYMEKHSTSRLVGAPPGYVGYEEGG QLTEKVRRKPYSVVLLDEIEKAHPEVFNILLQVLEDGRLTDSKGRTVDFRNTLIIMTSNV GADTIKKNSTLGFTAVQDSGKDYNNMKDKVMNELKKSFRPEFLNRIDEIIVFHSLDEKHI AEIVSLMADELRKRLKEQEVDFILTDNAKNFLAKEGFDPSYGARPLRRAIQKHIEDRLSE ELLKGSISKGDSLTIDEKDGELVVLRNEEAMTQTK >gi|333605728|gb|AFDH01000078.1| GENE 31 31268 - 32335 1008 355 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764772|ref|ZP_02171826.1| ribosomal protein L5 [Bacillus selenitireducens MLS10] # 1 350 2 351 365 392 55 1e-108 SLRHFVKEALSEWMKGDGPDSDIVISSRIRIARNLQDYPFPMLAANQQSAEVLEKVSAVL GNEDLKTISDFTLVPLSELNELERRILVEKHLISPNLATESRNGAVILNDNESISIMVNE EDHLRIQCLCPGFQIKEAWDLANQIDDIFESQLDYGFDERRGYLTSCPTNVGTGIRASVM MHLPALVLTQQINRILSAVSQVGLTVRGLYGEGSEALGNLFQISNQITLGQSEDEIIDNL YSVAKQIIEHERAARRQLMQESRIRITDRVMRSYGILTHASIIDSKEAAQRLSDVRLGID LNLVGEVPAHTMNELLVMTQPGFLQQIAGELLSPDDRDIRRAQIIRERFKPCHNV >gi|333605728|gb|AFDH01000078.1| GENE 32 32384 - 32902 502 172 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764773|ref|ZP_02171827.1| ribosomal protein L24 [Bacillus selenitireducens MLS10] # 1 168 1 173 179 197 54 6e-50 MLCQECGKRPATLHFTKIVNGEKTEFHFCETCAKEKGELIPGTPGGFSIHNLLSGLLDFD PSSGTVSNKARPIRCEHCGLTYSQFSKLGRFGCSHCYESFQDKLDPLFKRVHGNTQHVGK VPKRSGQEIEQKREVERLKKELQTYIEQEEFEQAAQLRDRIRDLDKKSAGSS >gi|333605728|gb|AFDH01000078.1| GENE 33 32915 - 33376 396 153 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764774|ref|ZP_02171828.1| ribosomal protein L14 [Bacillus selenitireducens MLS10] # 1 153 1 153 158 157 50 1e-37 MRNVSEIIEQYLKHILQQSPEGSIEIQRNELADQFQCVPSQINYVISTRFTLEKGYVVES KRGGGGYIRIQKIELNAYGSLLDTIMTTIRESIDQASAEGLIYRLEEGRLISRREAAIIK AAISRDVLQFKLPLRDEVRARILKAMLISLLSK Prediction of potential genes in microbial genomes Time: Sun Jul 17 09:32:09 2011 Seq name: gi|333605718|gb|AFDH01000079.1| Paenibacillus sp. HGF7 contig00075, whole genome shotgun sequence Length of sequence - 8481 bp Number of predicted genes - 11, with homology - 3 Number of transcription units - 8, operones - 2 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 630 - 674 8.3 1 1 Tu 1 . - CDS 688 - 846 64 ## - Prom 913 - 972 3.5 2 2 Tu 1 . - CDS 1232 - 1453 147 ## - Prom 1495 - 1554 1.7 + Prom 2624 - 2683 1.9 3 3 Op 1 . + CDS 2747 - 3337 52 ## Aaci_0612 hypothetical protein 4 3 Op 2 . + CDS 3409 - 3609 59 ## 5 3 Op 3 . + CDS 3659 - 3877 161 ## + Prom 3887 - 3946 4.2 6 4 Tu 1 . + CDS 4111 - 4854 64 ## Aaci_1185 hypothetical protein + Term 4926 - 4957 1.0 + Prom 5065 - 5124 5.5 7 5 Tu 1 . + CDS 5146 - 5691 -358 ## 8 6 Tu 1 . - CDS 5831 - 5998 102 ## 9 7 Tu 1 . + CDS 6104 - 6346 117 ## - Term 6761 - 6800 8.5 10 8 Op 1 . - CDS 6806 - 7090 92 ## 11 8 Op 2 . - CDS 7104 - 8114 292 ## Nther_2354 hypothetical protein - Prom 8230 - 8289 5.3 Predicted protein(s) >gi|333605718|gb|AFDH01000079.1| GENE 1 688 - 846 64 52 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNYDKLSCYVCRKETIHIVDGASRGLKPGEITAFGYCKECGKRGTWVSHPLE >gi|333605718|gb|AFDH01000079.1| GENE 2 1232 - 1453 147 73 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFNGMLFAFWIGNLKSSFYPGLPVLGIPEVKFDAFLGTMNEKPEPFSPLLGTFFLGPGVS CELFNHSHDIVEV >gi|333605718|gb|AFDH01000079.1| GENE 3 2747 - 3337 52 196 aa, chain + ## HITS:1 COG:no KEGG:Aaci_0612 NR:ns ## KEGG: Aaci_0612 # Name: not_defined # Def: hypothetical protein # Organism: A.acidocaldarius # Pathway: not_defined # 1 184 544 731 906 150 43.0 2e-35 MVRQFWQRDIQDAGIDPILNRLSPLTTNKTMRRMFGQSKWSLNLRKYMDEGHIFLWDLLN VSEQNIKLTVGHLINQYHLTAKTRRTGSKKHFLNVDEAHLVQIPVMGKIIAEDRKFGLCL ELITQYIDQFEGWLVQAILGNVGTIMSCTQGAAAAPKVSTMTAGIFDTDYLKTLPERVVA VYTKTKMNLAAVKLQR >gi|333605718|gb|AFDH01000079.1| GENE 4 3409 - 3609 59 66 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MEEAVQWGLSKGRELQARDGTAAHLVDKEIDQYLRTGTLLQAERGKQTKVDLPEEQPAKV FLPYDF >gi|333605718|gb|AFDH01000079.1| GENE 5 3659 - 3877 161 72 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKRQRMTHTFELKDEKIHEFLSQMSGTEKAQFLRDAVQHLYLMKNHGISISVPTSDREIP EILWKSVNTYIK >gi|333605718|gb|AFDH01000079.1| GENE 6 4111 - 4854 64 247 aa, chain + ## HITS:1 COG:no KEGG:Aaci_1185 NR:ns ## KEGG: Aaci_1185 # Name: not_defined # Def: hypothetical protein # Organism: A.acidocaldarius # Pathway: not_defined # 1 209 19 223 239 74 30.0 4e-12 MINDLGMVTKQQLLTITGWEKRHLEWAIESIRKRAARPEEKELWLKAYYFPHKTTTVYSL GRLGAEYALAMQQEARRLKDPPRAQLSHYIGINDILVRLLEAGISRERLQWGSTVESTDS LIRLWEWNHKQVDRKQMIRPDALLKIDEKFKFWIEFDNNTEGPKKLERKYHDYIKTLSPI SEKSPIIWVTNEEKRRTYLEENWDLLCKNFYKNQTDLPKMYFFTLKNETNFILNELGKLT LESTYDW >gi|333605718|gb|AFDH01000079.1| GENE 7 5146 - 5691 -358 181 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKRRYLFSKKRQCGLSWRQTLKHGGRYSHAQEHIRQLQVNRIGHTAAFSPACGSGSTPAE ARPAADGCASPGEATCWAPVTSCCGSTELVGPAAAGYVFAWILGAVDALWPDPASGSWAT CRRLRRLPWRSPPGGHRPERSGSAAARFATACCLVRDLCNSSTSKRAPYSQLWREGGACR K >gi|333605718|gb|AFDH01000079.1| GENE 8 5831 - 5998 102 55 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFQGREEAVPATPRRSRSYKLNRSGALGPMAAGRPPPGEEPQSAAGRDVAVSPTA >gi|333605718|gb|AFDH01000079.1| GENE 9 6104 - 6346 117 80 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKAIRVEGKRDIKHYIRTTNDTYSKMRKLSTSCEIRPAELSYICLDFVLHDYKFAKEFFI HLNSLKEVKKGLVQGSPLTI >gi|333605718|gb|AFDH01000079.1| GENE 10 6806 - 7090 92 94 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MAKPRVKQLYFTKHDDDLYAAIQKIPSGLQNHEIRRAMRLYFLGEQPSSTYYKGGNFETV RPSVVTESVEEKEPFKENDEAVAQVKLPASLIRR >gi|333605718|gb|AFDH01000079.1| GENE 11 7104 - 8114 292 336 aa, chain - ## HITS:1 COG:no KEGG:Nther_2354 NR:ns ## KEGG: Nther_2354 # Name: not_defined # Def: hypothetical protein # Organism: N.thermophilus # Pathway: not_defined # 10 330 50 373 376 75 24.0 4e-12 MTKEIVIRKIDIGYGYLKYLDNGGIVKKEKAVVALLGESLNAGETKGIDVISVDGLEYIV GDNVYKLGRKPITANENVRRAENIAYKVLAMYALAKTSQKSSETVSMVTGLPFQNMDEAE LLKTVFEKTHELKLNGKDMNITVKDVFVVSQGLGSFYSLVRQRGNVIFRKKILLVDLGFR TVNYLPLNNGDIDADTVKTNRDLGIQAAYKRITDAVNLEFKSNFKYYEVDDLLDKGVPQQ DKNSGIVYEPIIDRPYVKDALRMYARDVWTDILDKYDDRYRESLEEVVFSGGTAERVRDF LEEEKQHFCSIVEDSQDVQVLGYEEIAQQLELEESK Prediction of potential genes in microbial genomes Time: Sun Jul 17 09:33:15 2011 Seq name: gi|333605705|gb|AFDH01000080.1| Paenibacillus sp. HGF7 contig00149, whole genome shotgun sequence Length of sequence - 12518 bp Number of predicted genes - 11, with homology - 10 Number of transcription units - 5, operones - 2 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 26/0.000 + CDS 1 - 246 254 ## COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase + Term 267 - 307 4.9 + Prom 434 - 493 2.3 2 1 Op 2 13/0.000 + CDS 588 - 1769 1344 ## COG0126 3-phosphoglycerate kinase 3 1 Op 3 8/0.000 + CDS 1797 - 2549 904 ## COG0149 Triosephosphate isomerase 4 1 Op 4 5/0.000 + CDS 2551 - 4092 1723 ## COG0696 Phosphoglyceromutase + Term 4189 - 4222 -0.9 + Prom 4123 - 4182 2.9 5 1 Op 5 . + CDS 4252 - 5544 1320 ## COG0148 Enolase 6 1 Op 6 . + CDS 5603 - 6328 717 ## GYMC10_0220 hypothetical protein + Term 6353 - 6401 7.6 + Prom 6412 - 6471 4.0 7 2 Tu 1 . + CDS 6512 - 6748 258 ## COG1314 Preprotein translocase subunit SecG + Term 6781 - 6818 4.1 8 3 Tu 1 . + CDS 6875 - 6967 77 ## 9 4 Op 1 10/0.000 + CDS 7264 - 10203 2767 ## COG0557 Exoribonuclease R + Prom 10507 - 10566 5.7 10 4 Op 2 . + CDS 10624 - 11109 562 ## COG0691 tmRNA-binding protein + Term 11234 - 11272 0.5 + Prom 11856 - 11915 2.1 11 5 Tu 1 . + CDS 12060 - 12516 -32 ## Ccel_1547 S-layer domain protein Predicted protein(s) >gi|333605705|gb|AFDH01000080.1| GENE 1 1 - 246 254 81 aa, chain + ## HITS:1 COG:BH3560 KEGG:ns NR:ns ## COG: BH3560 COG0057 # Protein_GI_number: 15616122 # Func_class: G Carbohydrate transport and metabolism # Function: Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase # Organism: Bacillus halodurans # 1 81 255 335 335 118 75.0 3e-27 DDVNNALKEAADGPLKGILNYSDEPLVSSDYNGDPASSTIDSLSTMVVGDNMVKVVSWYD NEWGYSNRVVDLAAFIAKKGL >gi|333605705|gb|AFDH01000080.1| GENE 2 588 - 1769 1344 393 aa, chain + ## HITS:1 COG:BH3559 KEGG:ns NR:ns ## COG: BH3559 COG0126 # Protein_GI_number: 15616121 # Func_class: G Carbohydrate transport and metabolism # Function: 3-phosphoglycerate kinase # Organism: Bacillus halodurans # 1 393 1 394 394 562 72.0 1e-160 MNKKSVRDVEVNGKRVFVRVDFNVPLENGQITDDTRIRETLPTIKFLIDKGAKVILASHL GRPKGQVNEDLRLTPVAARLSELLGKPVAKADEAVGEAVQAKVNELKDGDVLLLENVRFY PGEEKNDPELAKQFAALADLYVNDAFGAAHRAHASTEGIAHQLPAVSGLLMEKELDVLGK ALNNPERPFTAIVGGSKVKDKIDVINKMLEIADNILIGGGLSYTFFKAQGHEIGQSLVDN EKLDLALGFIEKAKKLGKNFLLPVDIVISDDFSANANTNIVGIDSIPADWEGIDIGPKTR ELYADVIKNSKLVVWNGPMGVFEIEPFSHGTRAVAQACADTSAYTVIGGGDSAAAAEKFH LADKMDHISTGGGASLEFMEGKVLPGVVALNDK >gi|333605705|gb|AFDH01000080.1| GENE 3 1797 - 2549 904 250 aa, chain + ## HITS:1 COG:BH3558 KEGG:ns NR:ns ## COG: BH3558 COG0149 # Protein_GI_number: 15616120 # Func_class: G Carbohydrate transport and metabolism # Function: Triosephosphate isomerase # Organism: Bacillus halodurans # 1 250 1 251 251 302 61.0 4e-82 MRKPVIAGNWKMFKTVSEAASFVNDIKGKAEVAGVESVICAPYTNLPALVEAVKGTSIGI GAQNFHWEENGAYTGEISGAMLKDLGVTYVIIGHSERRAYFNETDETVNKKVLASFNYGL TPIVCVGEKLEEREAGQTKEVCRVQTEAAFKGLSADQAKQVIVAYEPIWAIGTGKSSTAE DANEVIAYIRQLIVSLYDSSVADAVRIQYGGSVKPGNIAEYMAQPDIDGALVGGASLEPA SYIQLVEGAK >gi|333605705|gb|AFDH01000080.1| GENE 4 2551 - 4092 1723 513 aa, chain + ## HITS:1 COG:BS_pgm KEGG:ns NR:ns ## COG: BS_pgm COG0696 # Protein_GI_number: 16080444 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoglyceromutase # Organism: Bacillus subtilis # 1 511 1 511 511 762 70.0 0 MATKPVALIILDGFGLRGEVHGNAVAQAKKPNYDRYWNQFPHTTLTACGEAVGLPEGQMG NSEVGHLNIGAGRVVYQDLTRISKSIRDGEFFDNNTLIGAVRHAKQNNKKLHLYGLLSDG GVHSHIAHLFALLELAKKEDLQDVYIHAFLDGRDVAPDSAKNYMEQLQAKIAEIGVGKVA TVQGRYYAMDRDKRWERTEKSYRAMVYGDGPHYTDPVKAITESYEKSVFDEFVMPAVITD ENDKPVGLVESGDAVIFFNFRPDRAIQLSQVFTNKDFRGFDRGELFPKDLYYVCLTLFSE TVEGYVAYKPKDLDNTLGEVLAQNNKRQLRIAETEKYPHVTFFFSGGRDVELPGETRILI PSPKVATYDLKPEMSAYEVAAAAVKEVNEDKQDVIILNFANPDMVGHSGMLEPTIKAVEA TDECLGQVVEAILAKGGVVCITADHGNADLVLDDAERPFTAHTTNPVPFIVTSNDVTLRE GGVLADIAPTLLHLLKLPQPPEMTGLSIIEEKK >gi|333605705|gb|AFDH01000080.1| GENE 5 4252 - 5544 1320 430 aa, chain + ## HITS:1 COG:BS_eno KEGG:ns NR:ns ## COG: BS_eno COG0148 # Protein_GI_number: 16080443 # Func_class: G Carbohydrate transport and metabolism # Function: Enolase # Organism: Bacillus subtilis # 1 428 1 430 430 635 76.0 0 MTIISDVYAREVLDSRGNPTVEVEVYLESGVVGRAIVPSGASTGAHEAVELRDGDKSRYL GKGVLKAVDNVNSIIAPEIIGLNSLDQVSIDKKMIELDGTHNKGKLGANAILAVSMAVAR AAAEAMELPLYVYLGGFNAKTLPVPMMNIINGGEHADNNVDVQEFMVLPVGAPTFKEALR MGAEIFHNLKSVLKDKGLNTAVGDEGGFAPNLSSNEEAIQTIITAIERAGYKPGVDVFLG MDVASTEFFKNGKYELEGEGKSFTPAEFVDLLASWVDKYPILTIEDGCSEDDWEGWKLLT EKLGGKVQLVGDDLFVTNTERLSKGINENIGNSILIKVNQIGTLTETFDAIEMAKRAGYT AVISHRSGESEDSTIADISVATNAGQIKTGAPSRTDRVAKYNQLLRIEDQLEGIAQYAGK EAFYNLKKFK >gi|333605705|gb|AFDH01000080.1| GENE 6 5603 - 6328 717 241 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_0220 NR:ns ## KEGG: GYMC10_0220 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 216 1 216 220 214 53.0 2e-54 MSAWVKTILLLIGSALLTQFIPFSAYFRNLDTMVHEFGHAAVTMILSGKVMAIVLNADHS GVTYSSVSGSWKLLPISIAGYVTASLFAVFLFWAYARGKQRLGLQITTVIAVLSLVLFVR NEFGVGWLIGFIALNIIVLAFTSGFIRNAYYLLVAFLCLEESVYGPLTLALLAAGNPNKA GDATNLASITPVPALIWGVVFLIFSLWCAKAAIQYFLGGDANRRRKARRSERAYPMGPGE R >gi|333605705|gb|AFDH01000080.1| GENE 7 6512 - 6748 258 78 aa, chain + ## HITS:1 COG:SA0733 KEGG:ns NR:ns ## COG: SA0733 COG1314 # Protein_GI_number: 15926455 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecG # Organism: Staphylococcus aureus N315 # 1 75 1 75 77 63 57.0 7e-11 MVILLKVLLVIASLGLIVTVLLQKGKSAGLSGAISGGAEHLFGKTKARGMDLVLARITVV LAAIFIVLTVIVAYVVKY >gi|333605705|gb|AFDH01000080.1| GENE 8 6875 - 6967 77 30 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFLSFQDILVSNLHLLVNRLNVGLAGNREE >gi|333605705|gb|AFDH01000080.1| GENE 9 7264 - 10203 2767 979 aa, chain + ## HITS:1 COG:BS_yvaJ KEGG:ns NR:ns ## COG: BS_yvaJ COG0557 # Protein_GI_number: 16080414 # Func_class: K Transcription # Function: Exoribonuclease R # Organism: Bacillus subtilis # 5 753 8 752 779 864 58.0 0 MVTEQDILNFMHENAYKPMTYQELEKHFGIESAAGFKDFVKLLNDLEQSGHVLRTRNDRY GVPERMNLIRGRLQAHPKGFGFLIPDDRDHPDVYIHANDMNTAMNNDIILVRVTSKGAAG GKLEGEVDRVVTRANTRIVGTFQNHESYGFVVPDDKRVQRDIFIPKNAFLGAADGQKVVV NIVQYPEGRAAAQGEVIEILGHKDDPGVDILSIIRKFQLPEAFSEEVIGEAESVPDSITE EEIVSQKRRDLRGKRIVTIDGEDAKDLDDAVNVERLPNGNYLLGVHIADVSYYVTENSAL DREAYNRGCSVYLVDRVIPMLPHRLSNGICSLNPQVDRLTMSCEMEFDAELNVVRHDIFT SVIKTSERMTYNNVRKLLTEEEPDADLLERYGYLVDDFKLMEELAMKLRNRRIQRGAIDF DFQESKIIVDKDGTPVDIVKRERSIAEMIIEEFMLAANETVAEHFHWLKVPFLYRIHEDP DAEKLAHFMEFITNFGYVVRGRGNTVHPRALQSLLEEIKGTKEETVISTVMLRSMKQARY DSNSIGHFGLAAEFYSHFTSPIRRYPDLIIHRVIREVLENDGALTDKRSEYLRGRMDDIA EQSSQRERVAVDAERETDALKKAEFMLDKVGEEFEGIISSVTSFGIFVELENTVEGLIRL SDMTDDYYHYHEMQHALIGERTSKIYRIGDEVKVRVGRVNMDEKTIDFEMVDMKPRSNKF SMLDRSKSGGRGGQKKRVAGGRPVKGGRGKDRGRVRDVIVKPGTPGGTAGAADAAAAGAS EGGGTKRRRRKKKGASGEAPLGITPAAAPGGTPSEDGSLSQEAQGAGRGRKRRKGGNPAA APDTGRENGLVTESGENGGGRRRKRKGGGAEGEAAVTPAAGTEGGGKRRKGAAPARGVSL RGESGEGGGQGGRGRRGREAGAGAASGRENGGPRTESTYSGNWASSVNALTKTVRGDRHT PDGRDPSEPGGRRGGRPRR >gi|333605705|gb|AFDH01000080.1| GENE 10 10624 - 11109 562 161 aa, chain + ## HITS:1 COG:BS_yvaI KEGG:ns NR:ns ## COG: BS_yvaI COG0691 # Protein_GI_number: 16080413 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: tmRNA-binding protein # Organism: Bacillus subtilis # 6 158 3 154 156 194 65.0 5e-50 MTVTKKADGKVLAQNKKASHDYFIEDTYECGLVLTGTEIKSLRNGRANLSDSFATIRNAE AFVHNMHISPFEQGNRNNPTDPTRARKLLLKKAEINKLIGASKQEGYTLVPLKIYIRNGY AKLLIGLGKGKKQYDKRDTAAKRDAQRDIQRALREKQKVAR >gi|333605705|gb|AFDH01000080.1| GENE 11 12060 - 12516 -32 152 aa, chain + ## HITS:1 COG:no KEGG:Ccel_1547 NR:ns ## KEGG: Ccel_1547 # Name: not_defined # Def: S-layer domain protein # Organism: C.cellulolyticum # Pathway: not_defined # 32 152 17 141 3320 99 46.0 3e-20 MLNKGKTARKFNTNFPAWRQMAFKIIRLKLSFLLLFSTFMSINWGIEANAAPVTSSLDNW YVRSTGQNINSVAYGNGTYVAVGQAGTILTSSDGMSWMTHSSGTRDLLSVIYVDGMYMAV GAAGTILTSSDGVSWMVRTSGTTNDLRRVTYG Prediction of potential genes in microbial genomes Time: Sun Jul 17 09:33:32 2011 Seq name: gi|333605684|gb|AFDH01000081.1| Paenibacillus sp. HGF7 contig00160, whole genome shotgun sequence Length of sequence - 21029 bp Number of predicted genes - 18, with homology - 15 Number of transcription units - 15, operones - 2 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 35 - 262 89 ## GYMC10_3919 hypothetical protein + Term 276 - 306 3.0 2 2 Tu 1 . - CDS 623 - 847 141 ## - Prom 916 - 975 6.2 - Term 1705 - 1750 12.2 3 3 Tu 1 . - CDS 1992 - 2624 208 ## COG0110 Acetyltransferase (isoleucine patch superfamily) - Prom 2658 - 2717 4.4 - Term 3240 - 3280 9.7 4 4 Tu 1 . - CDS 3281 - 4615 467 ## COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase - Prom 4642 - 4701 7.0 - Term 4883 - 4919 4.3 5 5 Op 1 . - CDS 5078 - 5296 270 ## PROTEIN SUPPORTED gi|163756262|ref|ZP_02163377.1| 50S ribosomal protein L20 6 5 Op 2 . - CDS 5307 - 5786 139 ## BCB4264_A2208 YoaS 7 5 Op 3 . - CDS 5803 - 5943 92 ## - Prom 5971 - 6030 4.7 + Prom 5757 - 5816 10.2 8 6 Tu 1 . + CDS 5852 - 6055 68 ## - Term 6388 - 6441 18.0 9 7 Tu 1 . - CDS 6451 - 7143 187 ## COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases + Prom 8227 - 8286 7.0 10 8 Tu 1 . + CDS 8316 - 8960 329 ## COG1309 Transcriptional regulator + Term 9010 - 9047 5.1 - Term 9259 - 9316 -0.5 11 9 Tu 1 . - CDS 9354 - 10718 704 ## COG0457 FOG: TPR repeat - Term 11257 - 11295 2.2 12 10 Tu 1 . - CDS 11356 - 11850 26 ## BBR47_27220 hypothetical protein 13 11 Tu 1 . - CDS 12760 - 13914 484 ## gi|228931350|ref|ZP_04094279.1| hypothetical protein bthur0010_59890 - Prom 14005 - 14064 8.1 - Term 14120 - 14160 3.0 14 12 Op 1 . - CDS 14266 - 15504 597 ## COG3635 Predicted phosphoglycerate mutase, AP superfamily 15 12 Op 2 . - CDS 15522 - 17009 1006 ## COG0471 Di- and tricarboxylate transporters - Prom 17175 - 17234 9.7 + Prom 17138 - 17197 7.0 16 13 Tu 1 . + CDS 17277 - 18200 573 ## COG0583 Transcriptional regulator - Term 18310 - 18341 2.5 17 14 Tu 1 . - CDS 18459 - 19673 602 ## COG4188 Predicted dienelactone hydrolase - Term 20240 - 20284 -0.2 18 15 Tu 1 . - CDS 20404 - 20859 403 ## Pjdr2_5283 DinB family protein - Prom 20906 - 20965 4.3 Predicted protein(s) >gi|333605684|gb|AFDH01000081.1| GENE 1 35 - 262 89 75 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_3919 NR:ns ## KEGG: GYMC10_3919 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 75 42 116 116 118 76.0 1e-25 MITGLGVQDENGRYKYELTSYNEGGNEKKLGFSAGKQLREGAYVQLYHTLIRGVTYWKEV TFAELPKAVQEQYQQ >gi|333605684|gb|AFDH01000081.1| GENE 2 623 - 847 141 74 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIKNLYETHLQVKDLNTSIEFYNKLGLELSLLIEERGIAFFILERNVNYLVFGKFQREVM LAKDILLLGLIWIY >gi|333605684|gb|AFDH01000081.1| GENE 3 1992 - 2624 208 210 aa, chain - ## HITS:1 COG:PM1197 KEGG:ns NR:ns ## COG: PM1197 COG0110 # Protein_GI_number: 15603062 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Pasteurella multocida # 3 205 4 207 207 253 60.0 1e-67 MGPDINSVFPIKNIRSLCFLKNVVINPNIEVGDYSYYDDLNNPLGFEKNVLYHFDFIGDK LKIGKFCAIASTAKFIMNGANHNTNSFTTFPFGAFGGDWEVGLKNLSGGFKGDTVIGNDV WIGYNATIMPGIHIGDGAIIATNAVVTKDVPSYSIVGGNPAKLIRYRFDEETIDILNTLK WWEWDIEKITEFIPVLTSNNTEALKELLNT >gi|333605684|gb|AFDH01000081.1| GENE 4 3281 - 4615 467 444 aa, chain - ## HITS:1 COG:CAC3194 KEGG:ns NR:ns ## COG: CAC3194 COG0771 # Protein_GI_number: 15896442 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramoylalanine-D-glutamate ligase # Organism: Clostridium acetobutylicum # 1 436 1 461 462 357 42.0 3e-98 MNPTFNTYIQSLAGRDVTVIGAGVSNSPLIRMLCSAGARVIVRDRNPILPRDEWDELGVE LHLGESYLDRVGGDIVFRTPGIRPDHPALDSARAGGSRVTSEMEEFFALCPCPIFGVTGS DGKTTTTSLIADMLANGGHMVHLGGNIGTPLLANVGEMSPLDTCVVELSSFQLMDMTCSP HVAVITNISPNHLDWHRDMDEYTAAKRRLLNFQSNDDLAVLNGDNPVTASLRGRGRTKYF GGHTIRDGVIDGLVPINDIRLPGWYNVENVMAAVAAVQGIVPDEAILETVRTFVGVEHRN QWVATVAGVHYYNNSIGSSPARTVSTLHAHVGRVLLIAGGRDKRVPFDEMAKLLPDHVKV LLLIGEAASQIEIEARKVPNCPHIIRCEGLAEAVEQAHKLAVPGDTVLLSPACTAFDQYR NFEERGHHFVELVRNLSVDDNRVR >gi|333605684|gb|AFDH01000081.1| GENE 5 5078 - 5296 270 72 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163756262|ref|ZP_02163377.1| 50S ribosomal protein L20 [Kordia algicida OT-1] # 1 65 1 65 67 108 80 3e-23 MAIIINIDVMLAKRKMSVTELSERVGITMANLSILKNGKAKAVRFSTLEAICKTLDCQPG DILEYKSDEDTQ >gi|333605684|gb|AFDH01000081.1| GENE 6 5307 - 5786 139 159 aa, chain - ## HITS:1 COG:no KEGG:BCB4264_A2208 NR:ns ## KEGG: BCB4264_A2208 # Name: not_defined # Def: YoaS # Organism: B.cereus_B4264 # Pathway: not_defined # 1 159 3 161 161 198 74.0 8e-50 MKEASTLFLKLAVILMGIPVLALCIFLVPNVANFASELYPNIASMKYLVFILMYGAAIPF YLALYQAFNLLRYMDKSKSFSQLSVNALKNIKHCAITISSLYVLGMPLIHFIAKKVDPPI GLLGLILIFSSLVIAFFAAVLQRLLQEAINIKSENDLTV >gi|333605684|gb|AFDH01000081.1| GENE 7 5803 - 5943 92 46 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVLAKTTGDDAAGPISLSLIGIFATSIVAVILEVLQKPIKNLLDKK >gi|333605684|gb|AFDH01000081.1| GENE 8 5852 - 6055 68 67 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTATILVAKIPIRLSDIGPAASSPVVLASTIKFTITNKMKKMTVKAHLFITFKDLRDNSE KALFFSI >gi|333605684|gb|AFDH01000081.1| GENE 9 6451 - 7143 187 230 aa, chain - ## HITS:1 COG:STM1546 KEGG:ns NR:ns ## COG: STM1546 COG0654 # Protein_GI_number: 16764891 # Func_class: H Coenzyme transport and metabolism; C Energy production and conversion # Function: 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases # Organism: Salmonella typhimurium LT2 # 2 202 297 475 502 77 28.0 2e-14 MPPTGGYGANTGVQDAHNLAWKLAAAVHKAASPELLKTYEAERRPVAQMTVSEAGRVADT GVFSAMKKQTEKRISPFDDLIVSVGYHYESKAILKQDAAPSSLDHFELKGRLGTRAPHIW GEYQGRECSTLDLLGLGFVLFVGEKAEGWEDAAKYVSGQFGVKINTYSVGQNGDFIDKDH GWQNAYQAKEKSVVLVRPDGFVCWRCEEHIEQPTLTLEEVFAQLLGKKRA >gi|333605684|gb|AFDH01000081.1| GENE 10 8316 - 8960 329 214 aa, chain + ## HITS:1 COG:mll2260 KEGG:ns NR:ns ## COG: mll2260 COG1309 # Protein_GI_number: 13472079 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Mesorhizobium loti # 11 159 11 155 231 97 38.0 1e-20 MEDHLKLSERQQEIVEAALELLAEKGYDELSIRDIGKKLGVKAPAIYWHLKNKAMIVDYM AEHILQKKMGNFVPREREQSWQDWLLEHITLFRKAMLSYPDGGRVIAGAHPFPNGTLAKF LEISFASLRSAGMDIRTARIVMLTVIRYTFGCVIEEQADEQNWETLAERTINSGELTNIM EAINVGGTDDENFMTGLKLIVAGGNEAMASDKFF >gi|333605684|gb|AFDH01000081.1| GENE 11 9354 - 10718 704 454 aa, chain - ## HITS:1 COG:FN0819 KEGG:ns NR:ns ## COG: FN0819 COG0457 # Protein_GI_number: 19704154 # Func_class: R General function prediction only # Function: FOG: TPR repeat # Organism: Fusobacterium nucleatum # 1 104 1 104 665 77 34.0 4e-14 MSKELLDKLQSWYDDDQHDKIVEAIEQLPESERDYELVGHYGRALNNLGRYTEALQQLLS VEQQGRQDATWNWRIGYSYFYMHQWEKALSAFEQFDRLEPGNADVDKYIEACHDIMGRQA VAIREITRVPFRERDFSQFWEMSDYADKSYVEAPPTAEMIASIEEELGYKLPADYIWLMQ QQNGGIPVNTCFPTAVSTSWAEDHVAITGIMGIGREKAYSLGGSLGSNFMQEEWGYPDIG VVLCDCPSAGHDVIMLDYRACGRDGEPAVVHVDQEAGYWVTFLAPNFATFIAGLVNEEVF DTSEQDKLDDLDKVEYAQFSSLLQSLCEKADGIDRIEAVIRNICTQIVEDKGYFAFHADE LSMLMYDIQFWLYAGANPGVTRAQYLAEYEKMIAFAQGFSTGGYAPDFVSSWLDERIKQG DIVNKGGVLSFTAAATERLVGKLIAIESGLGDER >gi|333605684|gb|AFDH01000081.1| GENE 12 11356 - 11850 26 164 aa, chain - ## HITS:1 COG:no KEGG:BBR47_27220 NR:ns ## KEGG: BBR47_27220 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 3 160 120 274 274 123 44.0 3e-27 MYREYLEAIGKLKALTKEVFTYTARHSIDETEKRFILVADAAYRGSYMLADMLMTFINGD EYVAVCPACENDVFIWPHEDNSVEIEILQAYEQDPVFHTDQESHVIVPVTSFADEEIRTL AERAEAIGEQTLVRHLYYLAGETLCPSCREKISVWPSLLSTFSK >gi|333605684|gb|AFDH01000081.1| GENE 13 12760 - 13914 484 384 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228931350|ref|ZP_04094279.1| ## NR: gi|228931350|ref|ZP_04094279.1| hypothetical protein bthur0010_59890 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] hypothetical protein bthur0010_59890 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] # 80 273 6 196 205 285 77.0 6e-75 MGNRTFLSVTNADTDSVDYENIAFETNNFLAPVWFCLVSQEQFQRYSGQLMHAWSKIQPH MDQPDVEDLPEWEGFSEAFQWQIPWADAAEQLRLSLPGMLAHFPSLAAPVHEWLETLSTH VQRYSAAVIHLELSQYFSFTGDPALYLKDIQEYVTLWQSPHPSQEKVWQGAADNFYMLNG EHLPWRERTVTQTEQAPEIPEIQPAQSIPPASGKRQPKWRQELYIWLLAILSAALFLTVY VKTSSGWLAVFGFLIPSLFIVLWHVIIAPKRTSRHRLEEATTLKWNSTPSYAVLRIEYFD GHSPIGVDGMETGPSEDKSLPDLVPWLQIMQAKVLSSHEVELMISTKNPPVSTLQLHLKL DEQLVAKDTVSAVNAIVLAHKMSI >gi|333605684|gb|AFDH01000081.1| GENE 14 14266 - 15504 597 412 aa, chain - ## HITS:1 COG:MJ1612 KEGG:ns NR:ns ## COG: MJ1612 COG3635 # Protein_GI_number: 15669808 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted phosphoglycerate mutase, AP superfamily # Organism: Methanococcus jannaschii # 1 411 1 410 411 335 43.0 7e-92 MLQRKVILAIADGVGDRPHPLLNHETPLEFAKTPHLDKLALMGISGMMDLIGSGIPVGTD MGHMILFGYQPHHYPGRGPIEALGIGMDVQEGDVVLRCNFATVDEYGIVVDRRAGRIREG TDEIANAIDGLELQGVKVYFKPATEHRAVLILRGSGLSENVSDSDPKAPNDGCPYEEVQP LDDSEESKRTASILNRLLSKFHAILSDHPVNAKRIEQGKLPANFILTRGAGKMARLEPVT DELNIKGSCIAGESTVLGVARLAGFKAITDSSMTGNIDTNIELKAKLAIEEIAHSDMVLV HFKAPDLKGHDNEPLEKAKAIEQFDKMVGLIAQGLPENTYLALAADHSTPCEVGEHTGDP VPILIYGPSIRRDRNWRYNEIDCASGGLGHLTGNEFVRTLHGFMGRVKKLGN >gi|333605684|gb|AFDH01000081.1| GENE 15 15522 - 17009 1006 495 aa, chain - ## HITS:1 COG:SA0645 KEGG:ns NR:ns ## COG: SA0645 COG0471 # Protein_GI_number: 15926367 # Func_class: P Inorganic ion transport and metabolism # Function: Di- and tricarboxylate transporters # Organism: Staphylococcus aureus N315 # 32 495 27 516 517 172 27.0 9e-43 MSEVKESVESDNKQPPIKKKSKMEERLKKWGIPLAITVVLLLFFMPTPEGMSAQAQSSIA IFTGALILWITTPIPIYLTSIIAILLLPLVGAVKDQSVAFETLGYDVIWLMVSAFILTAA MIKSNLGRRLSLWMVTKFGKTPKTTLFLLIVINFILAFFVPSTTARATLMVPICLILLEV YKAIPGKSNLGKTMMLQGIQADAIATSGVMTATSGNIIAVGFINDQAGGDIGYMDWLLAS MPTAIVTMLITFFVGLKLFSFKDENNFTNAMDTLRDELKKLGSFSLDEKKAVAIFIFTVI LWATGDYHKAWFGFEISTEQTAVLSALLCLLPRVGLLTWKETNIKWELMIFAAGAYAVGN ALDKSKGAEWIISKVVGALGLEQMNHALVYIVVVFLSMYSHLIFTSKTVRVTILIPAFIA LAKTLGMDPVPLALAAAMTMTYTITLPPHSKVNTIYFGTGYFTVLDQVKYAVVTCFIGAC VISLAIFTWFKVIGI >gi|333605684|gb|AFDH01000081.1| GENE 16 17277 - 18200 573 307 aa, chain + ## HITS:1 COG:CAC0023 KEGG:ns NR:ns ## COG: CAC0023 COG0583 # Protein_GI_number: 15893321 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Clostridium acetobutylicum # 1 301 1 299 299 156 30.0 6e-38 MNFSKLQTFLTLSECLNFTEAAELLYCSQPSVSMQIQSMEAELGVLLFDRIGKKLYLTKQ GEHFKPYAEQMINLLHSAKDHIRQLEDLSYGTLSFGASNFVGVYLLPMILRNYSKTFPNI KINMSITSSSHLIHMLDSNKVEFLVLSDRVLMDESRFESKTFYDDELVLIVNPLHPLAAK PDCTLQELANETFIIKPDKSATRSYLEGKFEELGFTPPKYLEISNLEGIKQAVIHELGVS IVSNFAIQQEVKNGLIVKIPIRGVTFIRGICYVYHRQKHLSPAAKQLVSLLDHFYEIRDP YRPVMES >gi|333605684|gb|AFDH01000081.1| GENE 17 18459 - 19673 602 404 aa, chain - ## HITS:1 COG:BH0727 KEGG:ns NR:ns ## COG: BH0727 COG4188 # Protein_GI_number: 15613290 # Func_class: R General function prediction only # Function: Predicted dienelactone hydrolase # Organism: Bacillus halodurans # 1 380 96 450 450 201 35.0 3e-51 MLVVTAGLVYAFPVFKLPEPTGKFKVGTQTYHFVDTNREEIFDEAKDSKRELMVQVWYPA QAGTGKYAPLIPDTQILRYMAANYGLPGFTLQHLKYVSGHAYSGAEVSSAQTSYPLILAN PGFGSSRFLHTSQAENLASHGYIVAVIDHTYNTFATEFPDGRITTINTNDLFSPDHDYRT ESGNRDKLGKVLTDDVAFTLNQFELIQSGQIPSYLKGRIDLGHVGVFGHSIGGATAYDAS YDPRIAVGIDLDGALYRLRDREGLRKPFLFMNSESEFERLKMVTDNHAYTEAELKRMGNT REWMDQVTEDKKLELERMRETVASGGQFLYIDNTEHLNFTDVQFISPIFNMLGITGKIAP ERANSVINAYMLDFFDMYLKNQGGILMKGPESRFPEVKFETSLL >gi|333605684|gb|AFDH01000081.1| GENE 18 20404 - 20859 403 151 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_5283 NR:ns ## KEGG: Pjdr2_5283 # Name: not_defined # Def: DinB family protein # Organism: Paenibacillus # Pathway: not_defined # 1 151 1 151 151 266 93.0 2e-70 MKTIKCMMDHLYWADGRILDALEESETKNKDLLKLVRHVAVAERVWLSRLQGKGSAQYSL WEEAEDLTAIRTMFEENAEQYRVYIEGLEDSELDEMIDYANQSGVPFRTSVRDILSQVLL HGQYHRGQINRALRIESAEPAQVDYITFARL Prediction of potential genes in microbial genomes Time: Sun Jul 17 09:34:33 2011 Seq name: gi|333605621|gb|AFDH01000082.1| Paenibacillus sp. HGF7 contig00118, whole genome shotgun sequence Length of sequence - 58751 bp Number of predicted genes - 58, with homology - 53 Number of transcription units - 30, operones - 13 average op.length - 3.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 897 903 ## COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase - Prom 943 - 1002 8.9 + Prom 896 - 955 4.6 2 2 Op 1 . + CDS 1127 - 1459 350 ## Pjdr2_4483 hypothetical protein 3 2 Op 2 . + CDS 1456 - 2007 669 ## PPSC2_c1738 protein + Term 2133 - 2179 3.9 - Term 1774 - 1811 2.1 4 3 Op 1 . - CDS 2049 - 2987 1073 ## COG0142 Geranylgeranyl pyrophosphate synthase 5 3 Op 2 19/0.000 - CDS 3012 - 3635 664 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 6 3 Op 3 . - CDS 3632 - 4447 705 ## COG4585 Signal transduction histidine kinase 7 3 Op 4 . - CDS 4444 - 5958 675 ## Sgly_0838 putative signal transduction histidine kinase - Prom 5986 - 6045 5.1 + Prom 5913 - 5972 6.4 8 4 Tu 1 . + CDS 6040 - 6207 76 ## + Term 6237 - 6281 12.4 + Prom 6460 - 6519 6.3 9 5 Tu 1 . + CDS 6560 - 6703 223 ## + Prom 6784 - 6843 3.0 10 6 Tu 1 . + CDS 6871 - 7167 277 ## Pjdr2_4485 hypothetical protein - Term 6967 - 7021 3.2 11 7 Tu 1 . - CDS 7168 - 8505 1408 ## COG4109 Predicted transcriptional regulator containing CBS domains - Prom 8543 - 8602 4.7 - Term 8550 - 8608 15.5 12 8 Op 1 . - CDS 8706 - 8981 321 ## Pjdr2_4490 hypothetical protein 13 8 Op 2 . - CDS 9105 - 9272 181 ## - Prom 9309 - 9368 5.2 + Prom 9300 - 9359 5.3 14 9 Tu 1 . + CDS 9402 - 11309 1318 ## COG4533 ABC-type uncharacterized transport system, periplasmic component + Term 11451 - 11494 4.6 - Term 11431 - 11489 12.1 15 10 Op 1 . - CDS 11575 - 12570 1113 ## COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases 16 10 Op 2 7/0.000 - CDS 12681 - 13517 922 ## COG3711 Transcriptional antiterminator 17 10 Op 3 . - CDS 13534 - 14967 1336 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific 18 10 Op 4 38/0.000 - CDS 15012 - 15857 884 ## COG0395 ABC-type sugar transport system, permease component 19 10 Op 5 35/0.000 - CDS 15871 - 16824 1152 ## COG1175 ABC-type sugar transport systems, permease components 20 10 Op 6 . - CDS 16902 - 18266 1504 ## COG1653 ABC-type sugar transport system, periplasmic component - Prom 18501 - 18560 6.9 21 11 Op 1 . + CDS 18729 - 20114 976 ## Pjdr2_4491 hypothetical protein 22 11 Op 2 . + CDS 20136 - 21281 577 ## BBR47_13690 hypothetical protein 23 11 Op 3 . + CDS 21286 - 22653 1187 ## Pjdr2_4493 hypothetical protein 24 11 Op 4 . + CDS 22653 - 23780 1010 ## Pjdr2_4494 hypothetical protein + Term 23794 - 23834 2.2 - Term 23586 - 23620 3.1 25 12 Op 1 . - CDS 23806 - 25065 1229 ## Cthe_2397 hypothetical protein 26 12 Op 2 . - CDS 25105 - 25476 373 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily 27 12 Op 3 . - CDS 25473 - 25862 487 ## GY4MC1_0294 hypothetical protein 28 12 Op 4 . - CDS 25877 - 26572 694 ## COG0463 Glycosyltransferases involved in cell wall biogenesis - Prom 26696 - 26755 4.6 + Prom 26597 - 26656 5.2 29 13 Op 1 . + CDS 26842 - 27378 518 ## Dhaf_3316 hypothetical protein 30 13 Op 2 . + CDS 27400 - 28956 1848 ## COG2268 Uncharacterized protein conserved in bacteria + Term 29018 - 29061 9.2 - Term 29013 - 29041 -0.1 31 14 Tu 1 . - CDS 29140 - 30405 1395 ## Tthe_2555 oligosaccharyl transferase STT3 subunit - Prom 30568 - 30627 4.2 - Term 30638 - 30693 14.1 32 15 Tu 1 . - CDS 30726 - 31406 615 ## COG0546 Predicted phosphatases - Prom 31536 - 31595 4.5 + Prom 31500 - 31559 5.0 33 16 Op 1 . + CDS 31622 - 32479 837 ## COG1737 Transcriptional regulators 34 16 Op 2 12/0.000 + CDS 32483 - 33211 767 ## COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase 35 16 Op 3 . + CDS 33208 - 34404 1399 ## COG1820 N-acetylglucosamine-6-phosphate deacetylase + Term 34433 - 34477 2.9 - Term 34416 - 34464 2.1 36 17 Op 1 2/0.000 - CDS 34487 - 35623 1115 ## COG1940 Transcriptional regulator/sugar kinase - Prom 35656 - 35715 3.2 37 17 Op 2 5/0.000 - CDS 35764 - 36972 1151 ## COG0477 Permeases of the major facilitator superfamily - Term 37026 - 37076 5.1 38 17 Op 3 . - CDS 37202 - 38308 1317 ## COG0673 Predicted dehydrogenases and related proteins 39 17 Op 4 . - CDS 38310 - 39128 1126 ## Pjdr2_4723 xylose isomerase domain protein TIM barrel - Prom 39159 - 39218 5.2 40 18 Op 1 . - CDS 39650 - 39979 333 ## gi|304406129|ref|ZP_07387786.1| hypothetical protein PaecuDRAFT_2460 41 18 Op 2 . - CDS 40005 - 40706 648 ## COG1741 Pirin-related protein - Prom 40862 - 40921 13.0 - Term 40972 - 41005 2.0 42 19 Tu 1 . - CDS 41081 - 41482 503 ## COG4824 Phage-related holin (Lysis protein) - Prom 41550 - 41609 8.6 - Term 41556 - 41591 5.0 43 20 Tu 1 . - CDS 41614 - 42468 192 ## PROTEIN SUPPORTED gi|167856514|ref|ZP_02479226.1| 50S ribosomal protein L1 - Prom 42629 - 42688 6.1 + Prom 42655 - 42714 4.6 44 21 Tu 1 . + CDS 42758 - 43810 683 ## COG0726 Predicted xylanase/chitin deacetylase + Term 43822 - 43852 3.0 - Term 43808 - 43841 5.2 45 22 Op 1 . - CDS 43859 - 44824 825 ## COG3584 Uncharacterized protein conserved in bacteria 46 22 Op 2 . - CDS 44862 - 44960 166 ## - Prom 45173 - 45232 2.7 47 23 Tu 1 . - CDS 45289 - 45510 242 ## - Term 45832 - 45882 7.3 48 24 Op 1 . - CDS 45885 - 46454 669 ## COG3546 Mn-containing catalase 49 24 Op 2 . - CDS 46532 - 46798 303 ## BATR1942_01035 inner spore coat protein 50 24 Op 3 . - CDS 46837 - 47040 202 ## Pjdr2_4606 hypothetical protein - Prom 47183 - 47242 4.8 + Prom 47102 - 47161 1.7 51 25 Tu 1 . + CDS 47252 - 49837 2014 ## Kfla_3229 beta-N-acetylhexosaminidase (EC:3.2.1.52) + Term 49951 - 49998 12.6 - Term 49939 - 49986 12.6 52 26 Op 1 1/0.000 - CDS 50009 - 51055 1283 ## COG0628 Predicted permease 53 26 Op 2 . - CDS 51073 - 52422 1354 ## COG1253 Hemolysins and related proteins containing CBS domains 54 26 Op 3 . - CDS 52450 - 53580 757 ## COG0535 Predicted Fe-S oxidoreductases 55 27 Tu 1 . - CDS 53704 - 55893 2031 ## COG2409 Predicted drug exporters of the RND superfamily - Prom 56037 - 56096 4.8 - Term 56066 - 56108 5.1 56 28 Tu 1 . - CDS 56174 - 57226 1095 ## COG2206 HD-GYP domain - Prom 57290 - 57349 4.5 - Term 57397 - 57452 1.1 57 29 Tu 1 . - CDS 57454 - 58284 1014 ## COG1968 Uncharacterized bacitracin resistance protein - Prom 58337 - 58396 4.7 - Term 58294 - 58342 8.0 58 30 Tu 1 . - CDS 58399 - 58749 301 ## COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases Predicted protein(s) >gi|333605621|gb|AFDH01000082.1| GENE 1 3 - 897 903 298 aa, chain - ## HITS:1 COG:alr2092 KEGG:ns NR:ns ## COG: alr2092 COG0079 # Protein_GI_number: 17229584 # Func_class: E Amino acid transport and metabolism # Function: Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase # Organism: Nostoc sp. PCC 7120 # 2 298 4 298 353 244 42.0 1e-64 MYAKAHIRSMAPYIPGFQPEAEQQVIKLNSNENPYPPSPDVRKALAGFDYALLRRYPNAT AEPVREVLADIYGVNRNQVFCGNGSDEIISLLFKAFLEEGSTIALPYPTYSLYRTAADIH RVHCEFVPTREDFSIDTEALLAVPSQAIILVNPNAPTGLLVSVDAIEELAGRYKGLLIVD EAYIDFADGEASALRLIGRCPNLLILRTLSKSYSLCGIRFGYAFADEALIEALDKCKDSY NVSMLTQTIAAAALRDRSYFGETVGRIRASRSSLGGSLRSLGFAVPDSETNFLLCTPP >gi|333605621|gb|AFDH01000082.1| GENE 2 1127 - 1459 350 110 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_4483 NR:ns ## KEGG: Pjdr2_4483 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 1 108 1 108 108 113 58.0 3e-24 MTGFVTSAILNFFVAFGVVMGGSMLAGIGSVLSLQPPTYKMLLIAENIKIWAMVAAIGGT IDPIRMIQDNFQDGQLSPAFKQILLIISAYIGAHMGTSLIQLICKGGGQS >gi|333605621|gb|AFDH01000082.1| GENE 3 1456 - 2007 669 183 aa, chain + ## HITS:1 COG:no KEGG:PPSC2_c1738 NR:ns ## KEGG: PPSC2_c1738 # Name: not_defined # Def: protein # Organism: P.polymyxa_SC2 # Pathway: not_defined # 1 165 1 164 165 79 28.0 7e-14 MKMPSFDRYPRFLAGIGLFLAGGIVGSAVFLSLYHHTYNVLVIENWNLKKENNGLQLDIE TLNKFKNKQGLITRVTVHLYNDIQHPLESHVQKALEDRVKRDLKIVEGQKLGEIRDSPQL YERLIASKTYYGVIDKDYIVNVKAMALVQSELTVWITADEPKKQALPDKGTIVPDHDAFK GSY >gi|333605621|gb|AFDH01000082.1| GENE 4 2049 - 2987 1073 312 aa, chain - ## HITS:1 COG:BS_comQ KEGG:ns NR:ns ## COG: BS_comQ COG0142 # Protein_GI_number: 16080222 # Func_class: H Coenzyme transport and metabolism # Function: Geranylgeranyl pyrophosphate synthase # Organism: Bacillus subtilis # 26 308 17 289 299 89 26.0 1e-17 MKAEVWSDIQNLIETYFTVPSLKELLLKSVADKKEEHSIWGELTWSVHDLLGGSNPAIHR AAALTELMLLALDIMDDIQDQDNTEKPWMTVPQEQALNVYTGLVTASVSELGALRRQYPA SPLPDPAKVCEFITEAINGQHLDVTNAVQTEEDYVGMVQRKSGTLVQLALYMGYACTDAN ADEDTVGKLNRLAVYMGLMAQLDNDLSDLLRFDYKNDLVQKKKTIPVLFLLDEEDAEFPV IQQYYNGEIDQPQFLKHKPQCVQYVVDSGCIEYTRTIQNLYLHHADELFAEIPAASANKE AFREIALARFEL >gi|333605621|gb|AFDH01000082.1| GENE 5 3012 - 3635 664 207 aa, chain - ## HITS:1 COG:DR0987 KEGG:ns NR:ns ## COG: DR0987 COG2197 # Protein_GI_number: 15806010 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Deinococcus radiodurans # 7 199 28 225 239 113 32.0 2e-25 MNKIQHILIVDDHPAMAYGTKFILEQEENIQVVGVATTGEMGVEMMVQLNPSIIFLDFHL PDLTGMEVAVKMKELNKDVQIVIFTGIDYMPILNNLLELGVCGIMSKDSSEDQIRNMMRA LKEGQSVIPISLLHQMRLSHPDDDLSSLTDEEINIMNQIVKGATNEQIADEIHMSKRSVD NYVRKIYDKFGVKSRAQAIEKFLQIKR >gi|333605621|gb|AFDH01000082.1| GENE 6 3632 - 4447 705 271 aa, chain - ## HITS:1 COG:BS_comP KEGG:ns NR:ns ## COG: BS_comP COG4585 # Protein_GI_number: 16080220 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Bacillus subtilis # 1 265 511 769 769 145 34.0 7e-35 MNREESEWLSLIISYLSVSLENLYLIRKLNMKLLELASELPNQEGSEEYVWFRKTMFDLQ EKERTRIATDLHDTTMQDIFFVQRKLKNLQKQLLNPDEHRQLKDILNHLELINMNLRQCC FELNPYLLKNIGLVRALQNLVDTESSLGDYEIQFVTEGKTTAMENLDYEAKRHIFRVIQE LITNAKKHSQASRLFIRLVASGSEVSIRYEDDGIGFRPNSSSGKTVGRSGMGLEQMKGRV LHLNGQFTMESMTGKGVEVRIQIPIKEGIPT >gi|333605621|gb|AFDH01000082.1| GENE 7 4444 - 5958 675 504 aa, chain - ## HITS:1 COG:no KEGG:Sgly_0838 NR:ns ## KEGG: Sgly_0838 # Name: not_defined # Def: putative signal transduction histidine kinase # Organism: S.glycolicus # Pathway: Two-component system [PATH:sgy02020] # 14 438 15 436 780 164 27.0 1e-38 MNYKKKWVILLLLVIVFLQVSFFKVAYRYPYLGILAEQNAVGQWYIAGLEKISIGDKVGF KTNDIVISIDGKDPSEHATVQKYHSIEQADKITIQRDGQTLEFSLKEYSTSMTIDILSLI GEIFAFLFAYFLYTRIANSVSASMLSVVFANIALIFMAIGASTRADILAKGVTMTLVAAL PFVFLHFLIMFFKERSSFSLPTYFMKYVYVGLIIFTGIQAVMFLPSAEFEFYSEVYYGTI FIFILGFTLNLALLAYLYIKYRKTNDYLFTVIRTVVIALICSFFPLVFLTFLPRLILKQE LAFSYYSGWFVMIFPVVFGYLMMSKQLYDLDILIRRVYYTAFISTLPSGVLVIVNYFIFQ KDASLKHLVISFLTTLIVLTFVTYSLEYFATRLEKIMFPRKYYLQQALKKIASDLGGITN FRELRDIVLVDIVDTLQVLGGAIVIQYADGNLEIISEGSIDEKEVRRRIVGNDWFDSDYT RTLIKGHEEYISFLVMTKKKRIRS >gi|333605621|gb|AFDH01000082.1| GENE 8 6040 - 6207 76 55 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MQTAVLWSRELKQAVKEAVGSKSASASSESLTKIEVNSLQKALASEKPEVRYIMW >gi|333605621|gb|AFDH01000082.1| GENE 9 6560 - 6703 223 47 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTQYQFDNFFEDLLKDTLIEKFETVEVPRLQLESSWEKLQQKLEISN >gi|333605621|gb|AFDH01000082.1| GENE 10 6871 - 7167 277 98 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_4485 NR:ns ## KEGG: Pjdr2_4485 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 1 98 1 98 98 76 50.0 4e-13 MLETVQIVLSTLIFITLLFSVVFSFRSRRKTDPKQRGTNAALMNISMGLMLILIAVTQLF FLSDTPVRRIFGTICLLLGLFNLFAGIRNYSYFSRMSR >gi|333605621|gb|AFDH01000082.1| GENE 11 7168 - 8505 1408 445 aa, chain - ## HITS:1 COG:BH3175 KEGG:ns NR:ns ## COG: BH3175 COG4109 # Protein_GI_number: 15615737 # Func_class: K Transcription # Function: Predicted transcriptional regulator containing CBS domains # Organism: Bacillus halodurans # 10 443 3 435 435 515 60.0 1e-146 MDETGTESLTKHEQILRHIESLKIGSKISVRKIADQLEVSEGTAYRAIKEAENQGLVSTK ERVGTVRVGKRERRNIDKLTFEEVVNIVDGEVLGGMNGLEKTLHKFVIGAMELDAMMRYV EAGSLLIVGNREEVHRLALEQGSGVLITGGFHTSPEMTKLADKLELPIISSSYDSFTVAS MINRAIYDRLIKKKILLVEDILTTNPHVFALKANSSVKEWRALVEETGHSRFPVTDEWNR VIGLVAPKDMLGADAGQTVDRLMTRNPLTVSPQTSVASAAHMMVWEGIELLPVVDGNRKM LGVINRNDVLKAMQYIQKQPQNGETFEDLIWGRFEEFRDEQGNVVFRGTITPQMTNHLGT VSEGVLTTLMTEAAYRVVQTVKKGDLVMDNMSTYFIKPVQIESEIQIRPNILEVSRKFGK IDVQIYHAGTLVCRAMLTAQFIDGV >gi|333605621|gb|AFDH01000082.1| GENE 12 8706 - 8981 321 91 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_4490 NR:ns ## KEGG: Pjdr2_4490 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 5 82 6 83 96 81 48.0 1e-14 MKGFKNVIFMSLALGMLLYSVPQLDIGGGFTLPTVFGAIWICFALLIIAAHLHELLGVDE ETRQEIVRVKRMKRWRMEQRLQGKKLLGLRK >gi|333605621|gb|AFDH01000082.1| GENE 13 9105 - 9272 181 55 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MYPQPYYLEKEMEQHNRDLDRRLRDYTKFGRFLCSKLMSSKDGTKNASTTAKSAV >gi|333605621|gb|AFDH01000082.1| GENE 14 9402 - 11309 1318 635 aa, chain + ## HITS:1 COG:BS_yhjP KEGG:ns NR:ns ## COG: BS_yhjP COG4533 # Protein_GI_number: 16078123 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, periplasmic component # Organism: Bacillus subtilis # 1 613 1 575 575 226 27.0 8e-59 MQLYDYYLQLRVSQPHAREGEPIPITLDLLAGHWFCTVRNVKLLLKKMTQLDWIRWQPGC GRGRSSLLTFVIPAPELISRTAMDLTRKGDFKAAVELIHTYGRHYALKDSFLDWMSGYFG FTTASSEGAVLDTLRLPLFRHPVSLDPAHAIFATDCQLISHVFSTLLELDPATGNLLPQL AHYWECSADGTEWTFYLRKKVCFHHGREMDAGDVKYSLERLADPASGSSWSWFIQDVVSL TPITPYMLRIGLKRPNHLLPFFLTFPAASIVPEDIVRDSPSLFGRSPIGTGPFRMEFYDK YICRLHAFDGYYGVRPHLDVIEMWILPEQLAAYRPKGNDKLIVSHGDVPMPAEEYKHQGF LAKEEHVFDGSTVLTFNARRGPCRSRLLRQAIDRLIDRQAMARELGDNRVGPSSGIMRDF QLRQGSRLPEDPDLNAGYARDNASSSVDELIRTSGYAGETLLLLAYAQHGEDARWIAGKL TEAGLSVKVETMPIAAFTDRDYVHQADMCMFMPVSSSPLGFLGYLLQTTNYIHRHMSSAL QSRIQNAVGQIQREASLERQAAELLKIEDMLHAETALLFLLKKTFRVAVHSSIGGVRVER QGWVDYRHLFLRERADEGDRTVNESGLRDSADERP >gi|333605621|gb|AFDH01000082.1| GENE 15 11575 - 12570 1113 331 aa, chain - ## HITS:1 COG:BS_yhfP KEGG:ns NR:ns ## COG: BS_yhfP COG0604 # Protein_GI_number: 16078096 # Func_class: C Energy production and conversion; R General function prediction only # Function: NADPH:quinone reductase and related Zn-dependent oxidoreductases # Organism: Bacillus subtilis # 4 331 3 330 330 342 57.0 6e-94 MTDSTFRALQVDKTGQGVSLGIREMTVEELPEGELLVKVAYSGVNFKDGLASTPESKTVR SYPMVLGIDLSGTVVSSADPRYKEGDEILVTGYALGTGHFGGYSELARVPADWAVPVPVG LTPKDVMALGTAGFTAALSIQRLEDNGLRPGQGPVLVTGATGGVGSTAVSMLAGLGYEVA ASTGKSSEHAYLRGLGASEVLPREALAAEDGKPLRREQWSAAVDPVGGASLPYVLGTVRY GGSVALSGLTGGGAFPATVYPFILRGVNLLGIDSVYCPADLRRKLWERLAGDLKPRSLGD MIQREITLEEVPAALQDILAGRMRGRVVVRL >gi|333605621|gb|AFDH01000082.1| GENE 16 12681 - 13517 922 278 aa, chain - ## HITS:1 COG:CAC0569 KEGG:ns NR:ns ## COG: CAC0569 COG3711 # Protein_GI_number: 15893859 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Clostridium acetobutylicum # 1 270 1 270 274 151 35.0 1e-36 MIQRKIIHVLSHNVVMTKLSTGKNSIAFGKGIGFKKEPGMIIQDADISQEFLLHTSEVLE HYEHILHAVDVKIIGITEEVIAYAQGHLEGEFSETIHAALVDHINFAVERCKRGVHILNP FAYEIKHLYEEEYRIASKAIDFLNQHLDVRLPDDEIAFLAMHFHTARTKVEKGTALAVVR LVAQVIERAKELGLDFDNSFSTVRFISHLKALIDRIMEQKTIRNPLLGKICEEYPLAFQK AVLLAELLKANLQKPIPMDEIGFLALHLERQMQRSGMD >gi|333605621|gb|AFDH01000082.1| GENE 17 13534 - 14967 1336 477 aa, chain - ## HITS:1 COG:BH0422_1 KEGG:ns NR:ns ## COG: BH0422_1 COG1263 # Protein_GI_number: 15612985 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Bacillus halodurans # 1 382 1 362 375 340 51.0 4e-93 MLHTLQKIGRSLMIPIAVLPAAAILQRLGAFTFQDPFLIFISKIFSTGGNAIVDNLPLLF AIGIAIGMTSGQGVAALAATVGYVVFVRALATFESVPVEQTTPGAHLDMGVLGGMMTGLI TVMLFNRFHNIKLPDYLMFFGGRRFVPIITSLVMAGMGGIMGLIWPPVQDVIRDAGLWIV DAGGIGVFMYGFLNRLLLVTGLHHILNSIVWFQVGEFMTNTGTYVHGDMTRYNAGDPSAG MFMSGFFPTMIFGLPAAALAMIKCALPEKRKKAAALLYSAALTSMLTGVTEPLEFSFMFA APLLYGVHAVLNGLSMLLMHLFNIKLGFSFSGGFIDLLLNWKLKEFPFTFLIIGAVYFVV YYGLFLFLIKAFKLKTPGREEDFPGLTAAIVSSAPPPEEERITAIVNSVGGIGNIIKVDS CITRLRLWLKEAEEVEEEKLKELGAFGIMNMGKGHVHVIFGTDSELIKESIAKRLAA >gi|333605621|gb|AFDH01000082.1| GENE 18 15012 - 15857 884 281 aa, chain - ## HITS:1 COG:mlr7002 KEGG:ns NR:ns ## COG: mlr7002 COG0395 # Protein_GI_number: 13475832 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Mesorhizobium loti # 16 281 25 287 288 169 36.0 6e-42 MSDGLKNPFWRIVVNLLLIVWAIMVLYPLVWTVLGSLKDNQQFFQGKPWNLPQFPLLFSN FSYVWDKYQFGGYFMNSIIVTVVSVLAGLVLSAMTAYILARFAFKGSGVLYYVYIASMMI PMFLGMIPLFFLMSDMGLTNSLLGLIIVYTVSTIPFSVFVLVGFFKTLPSEIEEAAMMDG ASYYGIFFRIMMPLAKPGLISVSIINVLNTWNEYILGVVLNSEPSKYTLPVGIAVMQGEM QYRTEWGPLFAALLISMVPVMIFYLIFQRQIASGITAGAVK >gi|333605621|gb|AFDH01000082.1| GENE 19 15871 - 16824 1152 317 aa, chain - ## HITS:1 COG:BS_yurN KEGG:ns NR:ns ## COG: BS_yurN COG1175 # Protein_GI_number: 16080312 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Bacillus subtilis # 25 310 2 287 292 187 39.0 3e-47 MKGTPVTNPAGAIVAKKPKGGRSKVRRNLFIASFILPTLLLYLVFTVYPMLKGIYLSLFD WSGGSMDYNFIGLDNFKEMFKDPIIPKALLNDYFLVAGKVIGFMVLALFFAVSLTRLKIK GSGFYRAIFFLPNVISVVVVGVLWRYVYNPNLGFLNSLIGAVKGEPFVFPWLGDAATAMW SLLPPSIWAGVGFCTLLLIAGILSIPDSLYEAAGLDGATQWQQFWHITLPLTWEQIQTSV IWIVMTTLNGSFIIVSIMTEGGPDNATQVLGSYLYQQGFRQYHLSYAAAIGVLTLFVSLI TTVALQRIMKREPLEIS >gi|333605621|gb|AFDH01000082.1| GENE 20 16902 - 18266 1504 454 aa, chain - ## HITS:1 COG:BS_yurO KEGG:ns NR:ns ## COG: BS_yurO COG1653 # Protein_GI_number: 16080313 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Bacillus subtilis # 68 450 47 419 422 75 22.0 1e-13 MKRNKWLNMGISLMMVSAIAAGCSKTNTTTTPAATPGASSNANSGEAGGKKLTGEFEIQY FVGGYGDTWWKSAIDEFQKANPDLKIKQSAGAKINDQMKPRWIQGNPPDVVYIDGAGANA RTMFQDGQLMDITDWLKTAKNADGKNIMDLFITKPEEYEAGKYYDVPLVFGSWGTFWDRA EFKKNNWEEPKDWESFLAVGDKIKASGKMSVYIHTGVYPYYINGAFLDSATVAANNYDTS VIKKINNMEEGVFKSEPVMKALDKIIQMRDKGFIDKGSVALNHTDSQTQFLQHKAAFIPN GLWVENEMKKDVPQGFEFGFIPSIAQEKGGKSVAIPTTATMGIAKKAKNPEAAKAFIQFI FTEKQAGKWAEATGALLNVKTNLDNTSASTLAKTAIKSYSSPDTVVAPEPVIPEDLKKVR NDSTLALTQGTITKEEWAKRMEDEAAKQRAKLKK >gi|333605621|gb|AFDH01000082.1| GENE 21 18729 - 20114 976 461 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_4491 NR:ns ## KEGG: Pjdr2_4491 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 18 460 18 458 458 359 41.0 2e-97 MTRIFHVRSLDPALYEDERTVLLSAGIMRAYRLAPDSAVKLRFGSASCEAVVRTAAEPGA SPDEELCLHPALGRRLGIRGGCRLSLVYQPSAATLYAGPLVGVLLSRLYSSQEMPFGSMT TFCRELTKAGEEAGVSLFFFSPEEIHTFPDLGGLYYDEEWRTGIFPVPHVIYNRLTSRKY ENKPEIQHFLKAVQLRHQTHIFNDKYLDKNAVFSALCSETALQDCLPESHPFSNYHMLKA MSGRYRTLFIKPASGSLGKGIFRLHVLEDGSCEVRFSALSGTVVLPYPDLFEAYSHMAGK IRTQAYQIQEGLDLLTIGGRPVDFRALVQRDGGGEWVLSSIVARIAAEQHFVSNLARGGT MTAVQEALAGTSLASRKGSIQRTLKSTALTVAQAISRNVKGTFGELGVDLALDAAGQVKL LEVNSKPSREEFSLPSAAEEPLVRPSVRRLLDYAVYLSGFM >gi|333605621|gb|AFDH01000082.1| GENE 22 20136 - 21281 577 381 aa, chain + ## HITS:1 COG:no KEGG:BBR47_13690 NR:ns ## KEGG: BBR47_13690 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 27 370 24 359 362 234 40.0 6e-60 MDHAVNRCLGVLASPGKAAPAGDSEPFFRKLGQNGAAEGIEVIVFSPDGISFEYETVDGF LYSPSDSAWREGTFPLPAVLYDRCFCSNYAEQRLYRRQLNRLHQLPGIRFLGGGLRGKWD VQRLLAADPALAPHLPLTRRLTSPHQLEPWLELHGAAFLKPEAGMHGKGALHVYRSPGPD FSWSVRGRDRANRPVQRDFGTALEMRRWVRGFIGKRRYLLQQYLPLTTPDGTAYDIRSLM QKDEHGLWKLTGMVVRSGGPGSVTSNLHGGGTACEAEAFLREQFPGGASGRLMKTLSVLS HRIALILESSHGRLAELGIDFGVCRDGRIHILEVNSKPGRAAFQSIDGGITARSAASNPV RYAAYLLRTQREPAGATSLGG >gi|333605621|gb|AFDH01000082.1| GENE 23 21286 - 22653 1187 455 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_4493 NR:ns ## KEGG: Pjdr2_4493 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 1 451 1 455 458 538 55.0 1e-151 MSLTTCTVHVNSKQEKSILVSGELAKALHLSKSKTLQLQVGSKSITLPARYIKKSGLHLY LPQSVITSVKLPRIGPCLAVSGSGKDIRLGPVIGILTNVASTTSGPFGTRTPFIRSLMQP GERKSFHIAFSPKDVNWQQGTVNGYMLQPQGGWVRKTVPLPDVVYNRLPSRKAEKLLSME DFKQRFVKRNIPLFNWAFFDKWDVYRLLENDPAFKYVPESVLDPSADQLKDLLTRHKFIY LKPTAGSLGIGIYRITYSTDRGYFVRYRRNGKNVLLRFNKFEGLVKMLGINRGKLTSYVT QQGIRLIEIDGCPIDFRFHLTKNGSNQWVVAAIGAKKAGKGSVTTHLRNGGQLMTAEQAL KQVYGSRSDAVLSRMKETSIELAEAIEKNYNHRLGELGFDLGIDQNENTWMFEANAKPGR SIFKHPGLKAQDKASLNYIYEHCVYLSRFRARRDG >gi|333605621|gb|AFDH01000082.1| GENE 24 22653 - 23780 1010 375 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_4494 NR:ns ## KEGG: Pjdr2_4494 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 1 369 1 374 387 362 50.0 1e-98 MDVSAHKKQQPLCIGILTTPDPKRRFSGNRENFIDLIKAGYEQGALVYVVTTSDLKLSGK HVQAYCYQLTAKKWNKQLMPLPDVIYNRIPTRRLEIQSDVQRTIQACIRSKQVHLFNPFF FDKWTLFEWLDQSPEIRKYVPVTKQLSSQAVLESMLKRFPFIYLKPVEGKAGKGIMRLER ITKKSGAQTYKLTMQETVNSHYELFTNLSDVWNRIAEIKKDESYIIQQGIRLSSFNKRPF DLRALLQKTSKGTWSVTGIGARVAGRQSITTHVPRGGSIDDPERLLEKSFGPLKAKRILQ RTRSTALLMASSVEQTSKQKLGEMSMDLGVDLDGRIWFFEANSKPMKFDEPHIRKKSLSR IIGYSVHLANKNKTK >gi|333605621|gb|AFDH01000082.1| GENE 25 23806 - 25065 1229 419 aa, chain - ## HITS:1 COG:no KEGG:Cthe_2397 NR:ns ## KEGG: Cthe_2397 # Name: not_defined # Def: hypothetical protein # Organism: C.thermocellum # Pathway: not_defined # 24 397 21 395 406 201 34.0 7e-50 MPHRLRSIPVRGWLWIVVLLTTLLKLAVVFTYGSSYNLGSDDQSYLETARIWLEKGMFTY NDPSKPTVFITPALPAFIALFMSGLGTGYVLEQTIRVVQVVMVSFSMILLFKIGIRLFNE RTALIAVVLTAVYPPMWNISFYILTEALFVLALMLLVHGALKAMDKPTAGNAVWFGLVWA FAVYVRPTIALWPGFFLLLLIYWRTIPWKKLAACLAVSALVFVLCLMPWWVRNYEVSGGQ FIPLTKSSGNPLLLGTFPYGPPPVAEQRTWHASSDLWVNDAFDTQWAKERIRTGFAEQPL YYLQWYTIGKFATFWGDVYYWNAVNWVSLILPVGIHYTILGFGIRGIWLAREKRLAYLLT VLFAYMSLLHMIYLAHSRYSAPLMPFMALFAGYAILQAWEGRGRTGAAVGRKHQKPSLP >gi|333605621|gb|AFDH01000082.1| GENE 26 25105 - 25476 373 123 aa, chain - ## HITS:1 COG:BMEII0439 KEGG:ns NR:ns ## COG: BMEII0439 COG0697 # Protein_GI_number: 17988784 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Brucella melitensis # 5 121 23 143 159 68 32.0 2e-12 MNPLHIGLILLNTLMLVSGQFLWKFGLSRKADSFESLQSIIHLMFSPFILGGLFIYGLAT VLWLFILNKVDISIAYPMQSIAYLITVIGAYYIFNEQMSVLKIAGCVVILIGVGMIGLSA RYS >gi|333605621|gb|AFDH01000082.1| GENE 27 25473 - 25862 487 129 aa, chain - ## HITS:1 COG:no KEGG:GY4MC1_0294 NR:ns ## KEGG: GY4MC1_0294 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y4.1MC1 # Pathway: not_defined # 2 120 4 122 122 105 42.0 7e-22 MIQVITIGVTVIFLFQILYYTSKHKLRDRHAFTWIMIALAGLVTGICIPLLNRFALWIGV SYMPSLIFLIVIVVTLSLLVHQTILLSKQQEQIKTLAQEHAYLENEVMLLKEQSRNQDSY TGAGRREAP >gi|333605621|gb|AFDH01000082.1| GENE 28 25877 - 26572 694 231 aa, chain - ## HITS:1 COG:SPy0794 KEGG:ns NR:ns ## COG: SPy0794 COG0463 # Protein_GI_number: 15674837 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Streptococcus pyogenes M1 GAS # 8 229 4 226 231 226 51.0 3e-59 MSRQSDVLIIIPAYNEEDAIEQTVDHLRKHVEYDYLIVDDGSKDRTAAIIRERGYNGVRL PVNLGIGGAMQTGYRYAARHGYKYAIQLDADGQHDARDIDKLVREIRESGADMVIGSRFV EKSSYKSSLPRRIGIYYFYMLIRILTGNRIFDPTSGYRIVNSKIIGEFATYYPVDYPEVE ILVSMARSKYRIKEISVEMKKRQGGVSSINPIRSVYYMLKVTMFSIIRRSF >gi|333605621|gb|AFDH01000082.1| GENE 29 26842 - 27378 518 178 aa, chain + ## HITS:1 COG:no KEGG:Dhaf_3316 NR:ns ## KEGG: Dhaf_3316 # Name: not_defined # Def: hypothetical protein # Organism: D.hafniense_DCB-2 # Pathway: not_defined # 5 173 5 174 177 171 55.0 9e-42 MESWYWGLFIAGILFALATLIFGEVLGHLSGMLDSASGHHLPFLQPAVLVGGITTFGGAG ILLSRYTELTSWQSGGLSLLIAAVLSVLVYLVYVKPMENSENSVAFSLQELVGKIGEVTV PVPASGYGEVMVRTGGGVTNQIAESFDGRSIPGHLRVVVVEVKNSVLLVSPLDSDPLN >gi|333605621|gb|AFDH01000082.1| GENE 30 27400 - 28956 1848 518 aa, chain + ## HITS:1 COG:BS_yuaG KEGG:ns NR:ns ## COG: BS_yuaG COG2268 # Protein_GI_number: 16080153 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 6 483 5 485 509 477 59.0 1e-134 MLNTDVLLIPGIVVGVILILGIAFWARYKTVSPDEAMIVTGSFLGSKNVSIDDSGRKMKI VRGGGAFILPIFQQSQFLSLLSHKLDVMTPEVYTEQGVPVMTDAVAIIKIGGSVEDVATA AEQFLGKPTEALKSEAQEVLEGHLRAILGSMTVEEVYRNRDRFAQEVQGVAARDLKKMGL QIVSFTIKDVRDKHGYLDALGKPRIAAVKRDADIAEAEAVRDARIQKAKAEEEGQKAELL RDTNIAEASKEKELKVAAFKKDQDMAKAEADQAYHIQEARSKQSVVEEQMRVELVRKERE IDLETKEILRREKQYDAEVKKKADADRYSVVQAAEAEKSRKMLEAEALQFRIEAEAKAMA EQKRLDGLALADAERARGTAEADVIRLRGLAEAEAKQRLAEAFEKFGEAAVLDIIVKMLP ELAGKVAEPIKGIDKLTVVDTGHGEGAARISNYVTSLMATAPEMLKNVSGIDVEGLIKGL TSRSAKPAAKPAPLTAELEPASAAGAIAAAKEDEPDEA >gi|333605621|gb|AFDH01000082.1| GENE 31 29140 - 30405 1395 421 aa, chain - ## HITS:1 COG:no KEGG:Tthe_2555 NR:ns ## KEGG: Tthe_2555 # Name: not_defined # Def: oligosaccharyl transferase STT3 subunit # Organism: T.thermosaccharolyticum # Pathway: not_defined # 12 386 18 385 394 187 33.0 6e-46 MGASRLWKKMLIVFVLAFALGLRLFYVLGEQYEPVEYDQKNYTTMAVQMLEKGIYGYNEA KSNTLVTPGFPVFLAAILAVFGYTDIERTFMVVRVLQVFISLGAIWYIYKIGLRLFNRTT GLIAAFFASVYGTFIVVNSLILTEVIFLTSFMALIYYQIKIVQENRTRDHLLAGLLLALA VLIRPNTLVVAPVPYVFLWFQHKKPYFKEISFGVLAFALGMLPWWIRNAITFHEIIFISK GGAGNPLLGGTDPYYRGTLDWSKIDFNNQQGEAIKRIKEGLQTDPALWIRWFTVGKMKEM FLNKLYIGDYGSSVPAWYAPWIPRFHKFLVYAGMGGSLIAFFIHKSYRYLITVFLILLGT QLMFIPEARYTIGMMPFLMLIISALLVQAVSYAVGLVRGRNKTGGGVRKDVRSETDGSKA V >gi|333605621|gb|AFDH01000082.1| GENE 32 30726 - 31406 615 226 aa, chain - ## HITS:1 COG:BH0430 KEGG:ns NR:ns ## COG: BH0430 COG0546 # Protein_GI_number: 15612993 # Func_class: R General function prediction only # Function: Predicted phosphatases # Organism: Bacillus halodurans # 10 226 4 219 223 127 35.0 2e-29 MNQSPTPQAMLFDLDGTLFKTETLLLPAYHAAFDALRREGVYEGPTPSDERILGGLGMLL EEIWERVLPDVPAAVRSRADELLLAEQMDRLLQGEGTLYDGVEETLQALHARGIRLFVAS NGLEDYVREVIRMKGLAPLFTGLYSAGEYATKSKVDLVKLLLEQHGLQSAWMVGDRSSDV EAGHRNGLKVIGCDYAGFRTEHELDEADVRITAFPELLGLLPREEN >gi|333605621|gb|AFDH01000082.1| GENE 33 31622 - 32479 837 285 aa, chain + ## HITS:1 COG:CAC0191 KEGG:ns NR:ns ## COG: CAC0191 COG1737 # Protein_GI_number: 15893484 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Clostridium acetobutylicum # 3 282 4 283 283 197 40.0 2e-50 MSSILRAIEERKHGLNRQEQVLAIYILEHSSQVVRMGITELAEQSKTSPATISRFCKTFH FQGYTDFKFQLGAELATQPAGQSYQDIVAGNPLEKIVSAMEANHMRSIADTTRLLDLKQV QSAVDALQSARQIDLYGVATSGVVALDFHQKLVRIGRYATAWSDPHMQITSASNLQPGDV AFAVSYSGDTPETIQALLCAKERGATTISLTKYGSNPLADLSDIKLFASTLEEGMRRGDM ASRIAQLHVIDILFTSLVSDRFDEHVTRLERTYHMVRKYRSKGRE >gi|333605621|gb|AFDH01000082.1| GENE 34 32483 - 33211 767 242 aa, chain + ## HITS:1 COG:BS_nagB KEGG:ns NR:ns ## COG: BS_nagB COG0363 # Protein_GI_number: 16080555 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase # Organism: Bacillus subtilis # 1 238 1 238 242 233 47.0 3e-61 MIIHKFENQQELNEAGAGIITALVQTKPDAVLGLATGSTPIGIYEEIVKAYNKGRVSFKN VRTYNLDEYVGLPDGHAESYRTYMNEHLFRHIDVQPERTRIPNGNASDLQEECARYNGEL DEIKQVDLQILGLGHNGHIGFNEPADELHGGTHLVELDHKTREANARFFPSINDVPTHAL TMGVGTILKARTILLVVRGADKADIVHRALTGPITTQCPASLLQTHPHLIVLLDSEAGRN FV >gi|333605621|gb|AFDH01000082.1| GENE 35 33208 - 34404 1399 398 aa, chain + ## HITS:1 COG:FN1133 KEGG:ns NR:ns ## COG: FN1133 COG1820 # Protein_GI_number: 19704468 # Func_class: G Carbohydrate transport and metabolism # Function: N-acetylglucosamine-6-phosphate deacetylase # Organism: Fusobacterium nucleatum # 9 376 2 366 386 270 39.0 3e-72 MSRSTSAQERILIVNARIVTENTVVDNGALLAVDGRIERIYKAHELAELDLTGAVDAQGS WLLPGFIDVHVHGGFGADFMDASAESLETITRFHSTKGTTAMLATSVTASREALDAVITA TDAYIRGGMPYAQLIGVHLEGPFISPKWSGAQNPEFISLPTSEWLEDWHARFPGLVKMMT LAPEREGAMDVIQWLSDHGIVAAAGHTDADYETIERAVEHGLSHAVHTFNAMTPLHHRNP GTAGAVLTDPRIHAEIIADGVHVHPAGVQLLTQTKKQHNLIMITDAISAAGLEDGDYKLG GLDVIMKDGICRLKEGGSLAGSTLTMIDAFKFMVNKIGVSVQQASEYASGNPARQMGVAD RMGSIARGKQADFLLVSPSLDLERAWVLGRELSLVTEA >gi|333605621|gb|AFDH01000082.1| GENE 36 34487 - 35623 1115 378 aa, chain - ## HITS:1 COG:BH1094 KEGG:ns NR:ns ## COG: BH1094 COG1940 # Protein_GI_number: 15613657 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulator/sugar kinase # Organism: Bacillus halodurans # 5 372 5 398 407 135 27.0 1e-31 MNQIGNQQMLREINKSLLLNNIYEQGPISRVDLARKTRLSPTTVSVLMEEAIREGLVRET GTAGSGVGRRMTLLDINAAGGCVLGVDLSNAPARCVLLDLRGNLLASQPLQPAQPLFGPE AMCSELPQLIRAFLEEQETPLATIRWMGVSIPGRIDEKRENVVNSTVLGLENFPLRTKLY EEFNIPMHLVNDLDAAGFAERFNGTAKGLQTIVYILIDYGIGAGLVLNNQIYRGRHDRAG RIREFSRFSTANLSKRLLETYPDTFGDVRDEEPLVVRRFVDLGMQGAEPFAGELEEIIET IASYCGHVLQLLSPEQLILGGWIGESEPFFKRLAERIQSREQAIVPTPVHSPRWKEYGAS IGAATIGLHRMFKSRTMS >gi|333605621|gb|AFDH01000082.1| GENE 37 35764 - 36972 1151 402 aa, chain - ## HITS:1 COG:BH2276 KEGG:ns NR:ns ## COG: BH2276 COG0477 # Protein_GI_number: 15614839 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus halodurans # 17 379 13 371 392 171 32.0 2e-42 MTTGAAERRSFTMFKLYILFLYGAFSLLFTYVPLLFLEHGLTRFQIGMLMAGGPFVSILA NPFWGYWSDRMQNVRRTLIILVICNLIVVQPVFHLHSFSWLYLVLLLYFFFQSPTFSQSN SLILSTIENTPYKFGTFRLWGSLGWAIAAVAAGPVLTAVGIEQLWWLYSGILMISLLFVF SIPQPKPAAAGDALPGGGFKQLLGNRPFVMLLLLGVLISVPNSINSTFVSIYLTDMGGSA TWIGWAAFLSSVFEAPVFLLLDRYLKRDSRTMFVCLALVSLLFSIRWLLMMLVDSPMQLI FIQLLHCITYGGYYYIGTNLTGHLIPARMRASGQAAFALTWGGVSGIFAGFAGGWMYDTL GAGKMYGIGAGVSLIGMIGFLLIWRGMRQSSADRGTDAAAGV >gi|333605621|gb|AFDH01000082.1| GENE 38 37202 - 38308 1317 368 aa, chain - ## HITS:1 COG:BH2165 KEGG:ns NR:ns ## COG: BH2165 COG0673 # Protein_GI_number: 15614728 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Bacillus halodurans # 4 269 6 275 348 164 35.0 2e-40 MNPIRIGIIGVGQIGKIHLDQYKLIPDAEIVAVCDVNEAEARRVADLYGIPEVYTDYNEL LKRDDLDAVDVCLHNNFHAPISIAAMKAGKHVYCEKPIAGTYADGKAMVDASREFGRLLH VQLGTLYRKETKAAKALIEGGELGRVFHARSTGYRRRNRPFVDGYGTPAFTRKETAAGGA LFDMGVYHISQMLYLLDLPKVERISGKLYQETDMDPGRRESSGFDVEELAIGLVRFENGI TMDIIESWAVHMNPFEGSSVLGSKGGLRLPVNGPDGNKLTHYSTRCDMDMDTTIDLDAAD LRWHRLRADEEAYDSSQHHWIAALQGRVKLLPTAEIALQTMLISEGMYLSDAQGREVSAE EVENGLKA >gi|333605621|gb|AFDH01000082.1| GENE 39 38310 - 39128 1126 272 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_4723 NR:ns ## KEGG: Pjdr2_4723 # Name: not_defined # Def: xylose isomerase domain protein TIM barrel # Organism: Paenibacillus # Pathway: not_defined # 1 264 1 267 272 321 58.0 2e-86 MKVSVGGFSFNQAFLNGTMDVFGYLETVRYRYGLATVDLWNGQFADRSHPLLKLPDREYL KKIRQAMDEKEMTLVNIAIDGAHLWDPDADKREALHKNALEYLDASILLGAKTVRIDTGG RGQSAFSEEELDYVAGRYREYCQIAQENGFTIGPENHMGPSLVPGEMKRLAEAVNHPSYG FLLHMHRWDQDREQGDAIVAPWTVHTHFDPQTAEADDAVETIRMLKKNGYDGYWGVEHHA QKQPYLEVEWLLTTVKHLLLMSEDGNNGEEQA >gi|333605621|gb|AFDH01000082.1| GENE 40 39650 - 39979 333 109 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|304406129|ref|ZP_07387786.1| ## NR: gi|304406129|ref|ZP_07387786.1| hypothetical protein PaecuDRAFT_2460 [Paenibacillus curdlanolyticus YK9] hypothetical protein PaecuDRAFT_2460 [Paenibacillus curdlanolyticus YK9] # 9 109 33 134 134 64 38.0 2e-09 MSEAHRLYVKHAVGSRMLLDTKEVGGFLHLSEVPGGWRFEISGVDLDAAREIADFKDELN LFYLEEGEEEEPQKWWYYGHKTPEIDYEANGRVLHITVDTRKAYSNRHV >gi|333605621|gb|AFDH01000082.1| GENE 41 40005 - 40706 648 233 aa, chain - ## HITS:1 COG:RSc2208 KEGG:ns NR:ns ## COG: RSc2208 COG1741 # Protein_GI_number: 17546927 # Func_class: R General function prediction only # Function: Pirin-related protein # Organism: Ralstonia solanacearum # 1 233 1 232 232 192 43.0 5e-49 MIKIYPASSRYSTDHGWLVSHFSFSFADYYDPDNTRFGPMRVLNDDTVQGGRGFGAHPHR EMEIVTIVLEGQLQHEDSSGHRAVTTYGGVQRMTAGTGIIHSEMNPGQDDVTLLQMWFDP EERGLEPSYETTEFKVEALKNNLLPVVSKPKAGPGVAGIHQDMSIYLSELDGGKSVTFEQ PEGRRVFFMVLDGEAALNNGTILGKRDSARITETPSLTIGSAAGARFMLIDLP >gi|333605621|gb|AFDH01000082.1| GENE 42 41081 - 41482 503 133 aa, chain - ## HITS:1 COG:lin0175 KEGG:ns NR:ns ## COG: lin0175 COG4824 # Protein_GI_number: 16799252 # Func_class: R General function prediction only # Function: Phage-related holin (Lysis protein) # Organism: Listeria innocua # 5 122 9 121 140 72 39.0 2e-13 MNQTIFGSLAAFGASLVTYAFGGWSELLGFFLVAIAIDYVTGVAASLKEKSGLNSNIGFW GLAKKGLMLLIILLGHRMDMLIGSSVVMDAAIYFYLVNELISITENYGRLGLPLPDKFKE VIAQLKNPKQDKD >gi|333605621|gb|AFDH01000082.1| GENE 43 41614 - 42468 192 284 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|167856514|ref|ZP_02479226.1| 50S ribosomal protein L1 [Haemophilus parasuis 29755] # 164 283 55 174 175 78 35 8e-14 MKIWVQSVVVSCAVLTAGLFAASDAHANAARSAKVQVNDQLVNTEGTAPFIDSSNNLMIP LRPVAEKLGTQIGWERAGAQMSISVTGNGHKITFTTGENQALVDGKKIDLPSKAQFLNNT VYVPMRFLADSLSIRVQWDNVNTIAIFDADGQYHSPAWYATVPQKSQQENTIVATANKYK GVRYVYGGSSPSGFDCSGFVQYVYDKNGVDLPRSSASMYASAGVKVSNPQPGDLVFFASN SKMQHVGIYVGADKFISATDDGVKVDSLGSAYWGSRYVGAKRVM >gi|333605621|gb|AFDH01000082.1| GENE 44 42758 - 43810 683 350 aa, chain + ## HITS:1 COG:BH1917 KEGG:ns NR:ns ## COG: BH1917 COG0726 # Protein_GI_number: 15614480 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted xylanase/chitin deacetylase # Organism: Bacillus halodurans # 125 346 51 272 276 181 38.0 2e-45 MKRAALAVSSAILLAFVSACSPAKLPGEGSASSRLDENRFIPHTLSEDPGPSSVSGPAKF QPAKIPAIKEKTAAAPSVSPAAPAAPAPAPPVPLKKLKNASAPKPEPKKKDVPVQKHHQE ANALQKTEQRKLSLAEIHHKYPAVFRMRGTSQGKKIALTFDDGPDLKYTPQVLDILKKHQ VKATFFVIGSRAQTHPEIIRRMVREGHVVGNHSYSHPFMPKLTASEFSSQIMRTQEVIKP LTGYTPRLVRPPYGAINEEQVRWMSDHHLLAVNWDVDSLDWKGLSGKQVYHNIVDNARAG SVILQHSAGGNDKHDLSGTVTALPDLIRSLKSSGYKLVTIPELLGISKDL >gi|333605621|gb|AFDH01000082.1| GENE 45 43859 - 44824 825 321 aa, chain - ## HITS:1 COG:BS_yocH_2 KEGG:ns NR:ns ## COG: BS_yocH_2 COG3584 # Protein_GI_number: 16078981 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 175 320 6 142 143 68 37.0 2e-11 MALKHHWKKTCATLLLGAVVAASSAFQSQAAETETAKNDGLLYWKLAKSYQEIAAGMTDT VGQAADSELTQSLVTPENQTLVLSEPNSMWNFASQMNMDVLDLLSLNPDADPLSLPAGSE LKIVGEAALEQLKALKATVKVPVQAPAKVQLASASPSQTDSIKPSEALQKSGKPQAPEPK KTAEKKAVKKPAAQAASASAKSGQTLTTAAGKQIQYKKVLNIKASAYSADPSENGGYAGI DYYGNKLTVGTIAVDPKVIPLGSTVYVTGYAFPGLPAKGMIAKATDIGGAIKGNRIDIFV PGSKDKVNNFGYQSVKVYILK >gi|333605621|gb|AFDH01000082.1| GENE 46 44862 - 44960 166 32 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIYFGTVCMTAASDRGESLAAAWATSQSEPDN >gi|333605621|gb|AFDH01000082.1| GENE 47 45289 - 45510 242 73 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGITLSLLIGMLVLLAASLGLRKPKEFDRSDNVPFRPFDDIYEGKKRPTVESVQSQAAVK IEEKPRERKRIAK >gi|333605621|gb|AFDH01000082.1| GENE 48 45885 - 46454 669 189 aa, chain - ## HITS:1 COG:BS_cotJC KEGG:ns NR:ns ## COG: BS_cotJC COG3546 # Protein_GI_number: 16077758 # Func_class: P Inorganic ion transport and metabolism # Function: Mn-containing catalase # Organism: Bacillus subtilis # 1 189 1 189 189 320 83.0 1e-87 MWIYEKKLQYPVRVSKCDPHMAKLLIEQYGGADGELAAALRYLNQRYTIPDKVIGVLNDI GTEEFAHLEMIATMIYKLTKDATPDQLKAAGLGEYYVNHDSALYYQNAAGTPWTAAYIQA KGDPIADLYEDIAAEEKARATYQWLIDLTDDVDLQDGLKFLREREIIHSMRFREAVEILK DERAAQKIF >gi|333605621|gb|AFDH01000082.1| GENE 49 46532 - 46798 303 88 aa, chain - ## HITS:1 COG:no KEGG:BATR1942_01035 NR:ns ## KEGG: BATR1942_01035 # Name: not_defined # Def: inner spore coat protein # Organism: B.atrophaeus # Pathway: not_defined # 1 88 1 87 87 95 59.0 4e-19 MHKQLDENYYRLLHDLQAADFVLVELTLYLDTHPEDGNALQQFNEFSQKRKQIALEYECL YGPLLQYGQNALPQQTWEWAEAPWPWQV >gi|333605621|gb|AFDH01000082.1| GENE 50 46837 - 47040 202 67 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_4606 NR:ns ## KEGG: Pjdr2_4606 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 4 66 86 148 151 79 65.0 4e-14 MYPEVRMYHPFVGPFDPCPPKLVKTYVTPPNLFIKFQPMCLPQFSPYEALRLGTLWPELY SSYEPKC >gi|333605621|gb|AFDH01000082.1| GENE 51 47252 - 49837 2014 861 aa, chain + ## HITS:1 COG:no KEGG:Kfla_3229 NR:ns ## KEGG: Kfla_3229 # Name: not_defined # Def: beta-N-acetylhexosaminidase (EC:3.2.1.52) # Organism: K.flavida # Pathway: Metabolic pathways [PATH:kfl01100] # 10 598 35 615 884 353 38.0 2e-95 MTHHLKAPLLTPPPQQVEYSGYTVPLYATAGILAGADTSPEALLELRSLLIGSGVKRVVP CKDWHSAAKMPLAVYIGKLPADPAVQREFRSRRSGDSLGIPEEGYTLAARRSKRGGSMIV LAGADHTGTLYAVRTLKQLIRKGPMMAAVPAITIRDFPAFPVRGVVEGFYGGPWSPDDRV NLIAFLGDHKMNTYLYAPKDDPYLRGRWREPYPEEELRHIRRYVDAAEKAGVRFVYALSP GLDICFSSNEEFQKLAAKASQMWTLGVRHFSLLMDDIFQNPNCADDVQKFGGDESPAAAA QAYLLNRFNREFVQAHPGASRLITAPTEYYQDGSSPYRKRFAELVDPGILVCWTGIGIAP AVITSGEAERIHKVFNHDMLLWDNYPVTDYVREKLFLGPLEGRDAELHKHGQFGYLSNPM EHLQASLLALFTSAEYAWKPGAYKLWESWERSLKEFGGPLYKELRILAENHLSSAVHGGE SPKLTALLAAFWEDFEKGAPEKAAARLIAYFGSMRRAALRLAQMHNPDFVRETADWLKKI DFYGKAGESAVSLLLAMMLGSGEEADARYSAYAAVLTQDTVDIEVTEPRTGSRRIDGENR ERGESELIRYTSVYGARTGTNEWGYEVTVVNGRIIREGGNNSVIPPDGYVLSLHSGQDRE WLKSMTIVGAKVDIRDGSVTISVEKGIYPVPNKKVSADGVMEPFLQRVSSAYEMYVRWRE NRGFTDPISTLPAWESNVLANMTDGRADTYFWSGRAPQSGDYVGVNLGQPAQVRRVRISL GHPDPAAPQAGDLILSASLEASLNGLSWTKLAEFTEQREIDFTPAAPFRAHFVRLKSNAS QTEWVMIREFDVTADRDQAAN >gi|333605621|gb|AFDH01000082.1| GENE 52 50009 - 51055 1283 348 aa, chain - ## HITS:1 COG:BH2608 KEGG:ns NR:ns ## COG: BH2608 COG0628 # Protein_GI_number: 15615171 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Bacillus halodurans # 5 347 15 352 352 134 30.0 3e-31 MSWKTLLILAFGLLLLYGLFTVGMPFLLAIVTAMLLEPVVTVGMRLLKLRRFAAVSLVST LFTLLTLGLFSMIGVKVVTEFMNFWGKIPVYLEETGIYVEDAAARARMMYESLFPGDNSQ MQVWLQNGLASAAQALERFILLLSDSFLGAAAAIPNLLILFIVYLFSLYLFSYSLPVLKQ SFLNMFDDRSREKVEKLILSLRQALFGFMYAQVMMSMLTYVLTLIGLLFIRTDYPLAIAL LVMFMEFVPVIGTGLVFLPWAIYRLLLGDPGMGMQIMLLFIVITLARRVIEPKILSNSVG ISALAAMVSLYIGFELMGVAGMFLGPLIVILFQTMRQVGLLQFKINLD >gi|333605621|gb|AFDH01000082.1| GENE 53 51073 - 52422 1354 449 aa, chain - ## HITS:1 COG:CAC1422 KEGG:ns NR:ns ## COG: CAC1422 COG1253 # Protein_GI_number: 15894701 # Func_class: R General function prediction only # Function: Hemolysins and related proteins containing CBS domains # Organism: Clostridium acetobutylicum # 21 432 15 425 428 380 46.0 1e-105 MGSFEWDKIFLNMALVLLLVLLNGFFVAAEFALVKVRQSKLQQLVNEGNKKAKFAFAVTK KLDAYLSATQLGITLASLGLGWVGESAIAELIIEPLFHALNWHSTFLSGTISLVLSFSIV TFLHIVLGELAPKSLAIQKPDAVSLWTSAPLMYFYKIFLPAIWVLNGAARLLLKMFGVQP ANEHDAAHTEEEIRILMNQSARSGHIDRDEMLLFDNIFEFSDRIAREVMLPRTDMDCLFI DQPYDEILQHIYETKHTRYPVALGDKDQIIGFVHITDLLTADATVQVELQQFVRPILSVP ESMEISQVLKLMQKKHSQLAIVVDEYGGTAGMLALEDIMEEIVGELHDEFDEDERPSIEV KGNITSVEGRTLIEDLNVLLHLEIEDEEVDTIGGWVFKTLEGSPIKGKKVVFGGHTFEVA EVDRLRITRVNITKNESETPKDPAAGLEE >gi|333605621|gb|AFDH01000082.1| GENE 54 52450 - 53580 757 376 aa, chain - ## HITS:1 COG:BH0889_1 KEGG:ns NR:ns ## COG: BH0889_1 COG0535 # Protein_GI_number: 15613452 # Func_class: R General function prediction only # Function: Predicted Fe-S oxidoreductases # Organism: Bacillus halodurans # 1 222 1 219 219 226 52.0 5e-59 MNERTAVPALMRLSPSYDPWDPIRSLQQHGRHTLTSVEFTVSNLCNMRCEHCAVGDTLVM KEGPKLALDHALRRLEEIQHLETISITGGEPMFSEKTVKEYIVPLLRYARERGVRSQINS NLTMELERYEWIAPYLDVMHISFNYTSVEDFHEVGFVRSGRPVGMQAASKMYDRMLDNSV ALSKGGMFISAESMLNTRTSEKIVPIHKIIEEIGCQRHEVHPMYPSSFASNLPILTLDQL RDTIHRLLDGRNPEMWMLLGTLPFYACNSAEEDRKLLSRLRSEPNLTVRNDPDGRNRLNV NMFTGDVYVTDFADVPALGNLHEDKLETVFDRWLNHPLSRTVDCHCPAVSCCGPNLLVAN SYYSGEDFTRRQAILT >gi|333605621|gb|AFDH01000082.1| GENE 55 53704 - 55893 2031 729 aa, chain - ## HITS:1 COG:DR0108 KEGG:ns NR:ns ## COG: DR0108 COG2409 # Protein_GI_number: 15805148 # Func_class: R General function prediction only # Function: Predicted drug exporters of the RND superfamily # Organism: Deinococcus radiodurans # 22 721 40 743 749 296 33.0 1e-79 MYRYRKRVLTVWIVFFAGAAILAGQVPGLLKDDGFTPKGSESDRGFHLLQEKLGVPPSSL QLVYDGDGKDLTTEKAKASIAKSLEPLKSLPYVGTWAFVESPRKESARAAEIQAVNVALK LEVEKVLEKYGELQACLTPPPGMKVYTGGAPALLADMQKASKNDIAKAEMIGLPIALIVL LIIFGTLTAALLPLIVGVASLTAALGITYFIARQVALSNFLPNMVTMLGLAVGIDYALFM VSRFREELRAGREIPDAVAVTCRMAGRSIFFSGIAVLIGLCGMLFVDLSFFRSLCLGGIL VVTISVLAANTLLPALLAMLGRHVNSLRVLPKAWSERGTTRRFWERTAYFVMRHPVVLAL VLTAALTAMMLPIRGMQLSTPSGDVLPPQYGARQAGDLAGQAFDERELNPLQVLATAPGG RWDAASVGRLRAYIASVKATGGVKGVRSVLDGFPGLSDEQTASVLSEPSLSSPGAGKTGA VRDSVLIRVVPESDPDDRATDALVRSLRGLDRQRLDVHMTGGPAYRLDMLDRIQDKLPVV IMFVLGVTFIVLLLAFRSLFLPLKAVLMNVLSLGASIGAVVLVFQHGFLADLMRVTSTGY VSATVPIVIFCVVFGISMDYEVFLISRIAEEYDRSGDNERSTAEGLMKTGSLITSAAFIL IVVVGTFIFTDIEIMKALGLGLALAVLIDATVVRVLLVPALMKLFGRLNWWAPGWLRPHG PREESDPLL >gi|333605621|gb|AFDH01000082.1| GENE 56 56174 - 57226 1095 350 aa, chain - ## HITS:1 COG:CAC0277 KEGG:ns NR:ns ## COG: CAC0277 COG2206 # Protein_GI_number: 15893569 # Func_class: T Signal transduction mechanisms # Function: HD-GYP domain # Organism: Clostridium acetobutylicum # 3 346 15 363 372 209 35.0 9e-54 MRLSRHIYNEQGAVLLAENVELTQSLLERLKTHGIDYLYIQDALTDDIVPDELVSEETKR RLFTEIRSTFRKLMNEPGRRTLANYQHFGKSFRQQMDHVIDDLSRHKDAMIMLGDIQIKD HYLYQHSLNVCLYTTMLGMSHGYERDELMTLGLGALLHDIGKTQIAEEILSKPSKLSEPE WSEMEKHTVYGFQMLKDEANIPLLSAHCAFQHHERINGSGYPRGIKDEEIHPYAKWIAMV DSYDAMTTQRVYRKAMLPHEALEVIMGGAGTLYDTDMLNLFRDKVAIYPLGVTVALNTGE IAVVVDLNASAPQRPVVRVIKNEAREMIASPYEIDLSKKLTIMITEVHPL >gi|333605621|gb|AFDH01000082.1| GENE 57 57454 - 58284 1014 276 aa, chain - ## HITS:1 COG:ECs3940 KEGG:ns NR:ns ## COG: ECs3940 COG1968 # Protein_GI_number: 15833194 # Func_class: V Defense mechanisms # Function: Uncharacterized bacitracin resistance protein # Organism: Escherichia coli O157:H7 # 1 273 4 273 273 223 50.0 3e-58 MYSLWIAVIIGIVEGLTEFLPVSSTGHMILTQSLLGISDDEPLMKTFTIVIQLGAILAVV IVYWKRILRILGINREPVAVKAGASRLNVLHILLGIVPAMGIAFLFDDLIETYLFSPKTV VVSLILGGILMIIAEKKMDRTRGPVVEDMDGISYRQAFTIGLYQCLSVLIPGFSRSGATM AGGMLHGVTRKAGADFTFIMAVPIMFAASGYSLLKSYKSFTSDDILFFAVGFIVSFIVAL LAIVTFIRFVQRMKLTYFSYYRFALAAIFIVYLWVV >gi|333605621|gb|AFDH01000082.1| GENE 58 58399 - 58749 301 116 aa, chain - ## HITS:1 COG:BS_yunD KEGG:ns NR:ns ## COG: BS_yunD COG0737 # Protein_GI_number: 16080290 # Func_class: F Nucleotide transport and metabolism # Function: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases # Organism: Bacillus subtilis # 10 97 373 460 462 69 37.0 2e-12 LLPEFQSKPIRGFGFRGEVLGILCLDGLTVRYDPEGKPSDKIRGVLVNGEALEQDRTYTV GMIDMFTFGVGYLSLREATDVEYLLPELLRDILGEELQHPERFQEAFESRWQPEGI Prediction of potential genes in microbial genomes Time: Sun Jul 17 09:36:39 2011 Seq name: gi|333605590|gb|AFDH01000083.1| Paenibacillus sp. HGF7 contig00134, whole genome shotgun sequence Length of sequence - 36676 bp Number of predicted genes - 31, with homology - 24 Number of transcription units - 15, operones - 6 average op.length - 3.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 6890 6174 ## COG1020 Non-ribosomal peptide synthetase modules and related proteins - Prom 7022 - 7081 2.6 + Prom 7532 - 7591 6.2 2 2 Tu 1 . + CDS 7717 - 8580 1028 ## Pjdr2_0504 hypothetical protein + Term 8600 - 8640 8.9 - Term 8588 - 8628 5.1 3 3 Op 1 . - CDS 8821 - 9204 424 ## BBR47_14350 hypothetical protein 4 3 Op 2 3/0.000 - CDS 9226 - 9816 467 ## COG1309 Transcriptional regulator 5 3 Op 3 . - CDS 9816 - 10574 695 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) - Prom 10615 - 10674 5.4 - Term 10702 - 10736 3.2 6 4 Tu 1 . - CDS 10759 - 11628 858 ## BL02710 aminoglycoside 6-adenylyltransferase 7 5 Tu 1 . + CDS 11721 - 11888 57 ## + Term 11927 - 11958 -1.0 - Term 12045 - 12103 12.4 8 6 Tu 1 . - CDS 12159 - 13595 1563 ## COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases - Prom 13736 - 13795 5.7 + Prom 13600 - 13659 2.8 9 7 Tu 1 . + CDS 13727 - 13831 61 ## - Term 13808 - 13838 3.0 10 8 Op 1 . - CDS 14013 - 14615 588 ## 11 8 Op 2 . - CDS 14636 - 15979 1151 ## COG2819 Predicted hydrolase of the alpha/beta superfamily 12 8 Op 3 . - CDS 15976 - 17334 1173 ## COG2819 Predicted hydrolase of the alpha/beta superfamily 13 8 Op 4 3/0.000 - CDS 17361 - 18275 828 ## COG1609 Transcriptional regulators 14 8 Op 5 1/0.000 - CDS 18308 - 20146 1522 ## COG0366 Glycosidases 15 8 Op 6 20/0.000 - CDS 20185 - 21018 886 ## COG3833 ABC-type maltose transport systems, permease component 16 8 Op 7 19/0.000 - CDS 21037 - 22335 1191 ## COG1175 ABC-type sugar transport systems, permease components 17 8 Op 8 . - CDS 22372 - 23658 1178 ## COG2182 Maltose-binding periplasmic proteins/domains - Prom 23720 - 23779 6.0 + Prom 23818 - 23877 5.3 18 9 Op 1 . + CDS 23920 - 23985 88 ## 19 9 Op 2 . + CDS 24067 - 24465 355 ## COG0251 Putative translation initiation inhibitor, yjgF family + Term 24483 - 24524 3.1 - Term 24616 - 24648 3.0 20 10 Tu 1 . - CDS 24683 - 26461 193 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 - Prom 26569 - 26628 6.3 21 11 Op 1 2/0.000 - CDS 26804 - 27832 1018 ## COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain - Prom 27893 - 27952 2.8 22 11 Op 2 . - CDS 28017 - 29357 1007 ## COG1653 ABC-type sugar transport system, periplasmic component - Prom 29421 - 29480 4.5 23 12 Tu 1 . - CDS 29698 - 29850 107 ## - Prom 29984 - 30043 4.5 + Prom 29991 - 30050 5.5 24 13 Tu 1 . + CDS 30295 - 30408 61 ## + Term 30507 - 30535 -1.0 + Prom 30498 - 30557 4.2 25 14 Op 1 . + CDS 30625 - 30897 264 ## gi|332975398|gb|EGK12292.1| hypothetical protein HMPREF9374_1612 26 14 Op 2 . + CDS 30924 - 31010 77 ## 27 15 Op 1 . - CDS 31163 - 32314 822 ## Pjdr2_3132 hypothetical protein 28 15 Op 2 40/0.000 - CDS 32311 - 33777 1520 ## COG0642 Signal transduction histidine kinase 29 15 Op 3 2/0.000 - CDS 33782 - 34501 756 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 34521 - 34580 1.5 - Term 34584 - 34626 4.1 30 15 Op 4 18/0.000 - CDS 34699 - 35919 942 ## COG0477 Permeases of the major facilitator superfamily - Term 35941 - 35978 -0.9 31 15 Op 5 . - CDS 35991 - 36545 541 ## COG1846 Transcriptional regulators - Prom 36604 - 36663 1.7 Predicted protein(s) >gi|333605590|gb|AFDH01000083.1| GENE 1 2 - 6890 6174 2296 aa, chain - ## HITS:1 COG:BS_ppsA_2 KEGG:ns NR:ns ## COG: BS_ppsA_2 COG1020 # Protein_GI_number: 16078895 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Non-ribosomal peptide synthetase modules and related proteins # Organism: Bacillus subtilis # 12 1495 33 1509 1516 1016 38.0 0 MYPNTSVGIIVGTLFIRGPVNTDALMQAIYQLVRDHDAFRIRIESSESGEPVQWFANESD IEPHCDYMEMGSEAEAKEWLDQFNHTPLSIFDEQLYQFCLFNLNNEEHWFNIKIHHSIAD GIASHLLCTTIMENYTKLIDGREPDAKAKGTYLDYIYAEQEYERSDRYQKDKAYWLDKFE SFSEITRMKPSSPYSVSTEADRVSVPFAGKRYEQLQRFSEENNISTFTVFLAALYILLHK VTGNEDITVGTIYANRTSKQEKETLGMFVSTVATRMLLEPDQHVLAFLQHVSKEQKANLR HQKYPYNQLIQDLRERNKQWDVPELFRVDIEYLPVNWTYYDGLSVIRKSSHSGHEVGDFA VHVVDMLDDKEIDLNIDYRAQLFDESEILRISEQLFTIIDRIVLNPRQTVRELSMLSNEE KNKILAEFNPPVSELPPDKTFHQLFEEQAALNPDTAAVVYESNQLTYGELNDRANRLAGS LRGAGIGREAVVGILADRSVDLLVGVMAVWKAGGAYVPLDPDYPSDRIRYMLEDSGAAVL LTQSGLRDRAGTWQGEGGALRTILCLDDEKSYSEERENAPTESRQDDLAYVIYTSGTTGR PKGVMIEHRSLVNTAAAYRKEYGLDQFPVRLLQLASFSFDVFVGDIARTLYNGGTMVICP KDDRIDPTRLHGWIQSRQITVFESTPALIIPFMEHVAQQGLDMSSMKLLITSSDSCSVED YRQLQERFGSRFRIINSYGVTEAAIDSSFYDEPLSKLPEAGNVPIGKAWLNAKFYIVDAQ LNPVPVGILGELCIGGPGVARGYMNRPELTEEKFADSPFAAGERLYRTGDLARWMEDGNV DFIGRIDYQVKIRGYRIELGEIETAMLRFDGIRQAVVTDRTDERGQKYLCGYAVAEYEID TRELHAYLEQTLPSHMVPARVMRLDRLPLTPNGKVDRKALPEPEGSVQAEVKYIAPRTPA EQALAAVWQSVLGVDRVGLSDNFFGLGGDSIKALQVSSRLLQAGYKLVMRDLFHYPTIAS LSPQLQTAGKTASQEEVTGAVTLTPIQRWFFGQNPADPHHSNQAFMQYRREGFEETALRK TIAKLVEHHDALRTVYRKTGTGYEAWNRGAEEELFSLEVADFTGLGNCKAAVEAKASEIQ GSIDLEKGPLVKLGLFRCTDGDHLLMAIHHLVVDGVSWRILFEDFAAGYEQALGGQAISL PHKTDSFQTWAGQLSRYAGSTALESERTYWRQIGRIELAPLPKDLGQEKSRLQDSDVVTV RWTEGETEQLLKQAHRAYNTEMNDLLLTALGMAVQAWTGHSRVLVNLEGHGREDILPDVD ITRTVGWFTSQFPVMLESGRDQTVAQQIKQTKEGLRRIPNKGIGYGILKYMPEERESDLF GSDPEISFNYLGQFDQDYQSSGLEPSPFSTGNDISGNAVMDFALDMNGMVTEGSLELTIR YGTTQYRRESIERLGSLLETSLRGVIAHCLSKDLPELTPSDVLLPELSVEELEQLTARTA PIGELENVYTLTPMQKGMLFHSLLDADSEAYFEQVTFDLQGSLDAEAFAKGLDVLIQRHE ALRTNFISGWKDEPVQIVFRQRKGEIYYADISGLDEAEREQALAELANADKARKFDLAHD SLMRVTLVRTDEQTWHLIWSHHHILMDGWCMSFMIKEVFESYFAFLERRKPELPPVTPFA RYIEWLEKQDRNAAADYWSGYLNGYDHHTKLPQEKAQRKAESFNAVELDFEFSRELSERI ERVSRQNQVTLSTFVQTLWGLVLQVYNNSRDVVFGCVVSGRPADIAGVESMIGLFINTIP VRVRSEAGQSVADVLRKTQEQALASGAYDTFPLYEIQALSEQKRDLISHIMVFENYPMEE RIEQLIGGNGALAISNIQAPEQTNYDFDITVIPGERIVIRFTYNADTFSEEDIRGIHGHF TRAVEQAAADPNIPVEQLELLTLSEKEQLFEAFNPAMSELPQVQTFHRLFEEQAVRTPDA LAVVYEDKQLSYRELNERANRLGGTLRAGGVGRESIVGILAERSVELLVGVIAVWKAGGA YVPLDPDYPADRIRFMLEDSGATVLLTQTSLRESAEAWLDAEETALRTILCLDDEQSYSG DGENAAIGSLTMGNANDSAESARVSADQGENAALGSTADSGSDGIPYETQPHDLAYVIYT SGTTGRPKGVMIEHRSLVNTAAAYRREYRLDRFPVRLLQLASFSFDVFVGDIARTLYNGG TMVIVPKDDRIDPARLHGWIQEQQITVFESTPALIVPFMEHVAQHELDMSSMELLITSSD SCSVGDYRVLQERFGS >gi|333605590|gb|AFDH01000083.1| GENE 2 7717 - 8580 1028 287 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_0504 NR:ns ## KEGG: Pjdr2_0504 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 1 287 1 287 287 390 74.0 1e-107 MFTRLLRTTALVLTVGSTLLTGTVIQSEPAHAASNMVPDYEVKILMSPAAVLGSDNKLKS DVLDTFAMPSSVTKMNVAFLDTNAKTIYTGGWSPRIRKTEGESKFELSYKKRYPIANNDI NAALTKANQDGFDSSDTNYEAQVEWGYQNKTLSITRSKNASKSGYSGMDLPSVSDARSLM ISNAPGKFDDWLSNGWGTSLLGSSRYYGPVLAKRSIGTWNGLKLYIEVWPIRNSAGTGTE YIVEASFKTTSESTASAKHDELIALLQSKGWFLAQDSLKTQLIMDRY >gi|333605590|gb|AFDH01000083.1| GENE 3 8821 - 9204 424 127 aa, chain - ## HITS:1 COG:no KEGG:BBR47_14350 NR:ns ## KEGG: BBR47_14350 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 1 127 1 127 127 145 60.0 4e-34 MENLAAKSLIEKYVEAYNAFDIEGMLLLMHEEIVFRNISNGVVNAETEGKDAFRELAGQS QKLFSQRCQTITDYAVKGDRVEVEIDYEGTLAADLPHGPKAGDKIALKGKSVFKIEDGKL LVIEDYS >gi|333605590|gb|AFDH01000083.1| GENE 4 9226 - 9816 467 196 aa, chain - ## HITS:1 COG:BH0987 KEGG:ns NR:ns ## COG: BH0987 COG1309 # Protein_GI_number: 15613550 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus halodurans # 1 148 1 147 203 69 26.0 5e-12 MPRSREENERVRQLAQENIRTSAMQVFIEKGYYNASIADIAKRAGVSKGLLYNYYKGKEE LLGDMVQSRIEEIEDVMQKAASLATPSEQLKHIIDGAIDNVLQHPKIYRFYLHLQTQPEE DLLLSRYSQMLNEEMARQFQLQCEMFRKLGVPEPEIRSLHFSSAIHGISLMISTYPEHYP VRQVKEQLFRDFCVTE >gi|333605590|gb|AFDH01000083.1| GENE 5 9816 - 10574 695 252 aa, chain - ## HITS:1 COG:MA3635 KEGG:ns NR:ns ## COG: MA3635 COG0596 # Protein_GI_number: 20092435 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Methanosarcina acetivorans str.C2A # 3 239 25 270 282 97 30.0 3e-20 MDLYYEVQGKGAPVVLIHSPGVDSREWKFIAPILAQSFQVITFDGRGTGKSPAPTDPANL VEDLKRLLDHLNIGQAALIGHSMGGQAAADFALTYPSMVSRLILLAPSLSGFPYSKEFTE WLAQVNSFAPDLDKMIGTSLAGPNYRVVMSSPQRDFLIEMHTDYMRRVFTEWKSFEVNWP QPPAIERLEEISAPTLFLQGTVEWGDMERVAEEYKRVPSCKIIRIEGADHMLTLTHPAET AGSIEQFLKDPI >gi|333605590|gb|AFDH01000083.1| GENE 6 10759 - 11628 858 289 aa, chain - ## HITS:1 COG:no KEGG:BL02710 NR:ns ## KEGG: BL02710 # Name: aadK # Def: aminoglycoside 6-adenylyltransferase # Organism: B.licheniformis # Pathway: not_defined # 1 288 1 295 296 417 70.0 1e-115 MRSEQEIFNLVLKVAENDSRVRAVGLNGSRTNPNVPKDIFRDYDIVYLVTDRESFLNDPE WVNVFGERMIMQTPEEMALFPNELGNRFTYLMLFEDGNRIDLMLIPLEEKEMYCREDKLT VILLDKDNALPVIPPPTDEDYWVQRPNAEFYADCCNEFWWVSTYVAKGLWRQEILYAIDH LNLVRAMLLKMLEWKVGIDTGFSLSIGKNGKFLKRYLDEESWNKLLSTYENGSYDQVWNA LYVMGELFEPAALQVAAEFGYVYPAEEAEKIKPYLRQVQLLAPDARDIY >gi|333605590|gb|AFDH01000083.1| GENE 7 11721 - 11888 57 55 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFRKCHQLILPDKNCKKGLPKSPIQLRMYVTAFLLWPGAKKPAVSYNALRQICGS >gi|333605590|gb|AFDH01000083.1| GENE 8 12159 - 13595 1563 478 aa, chain - ## HITS:1 COG:MYPU_0230 KEGG:ns NR:ns ## COG: MYPU_0230 COG0446 # Protein_GI_number: 15828494 # Func_class: R General function prediction only # Function: Uncharacterized NAD(FAD)-dependent dehydrogenases # Organism: Mycoplasma pulmonis # 4 444 24 473 478 343 40.0 5e-94 MTFKVAVIGCTHAGTAAVKNIATQYPDAEITVYERNDTISFLSCGIALHVGGVIGDAQGL FYSSPEELARLGVVTRMRHEVLEVDVQARTLRARNLESGEEFSDTYDKLVVTTGSWPVIP RMEGIGLENIQLCKNYGHAREIIARAADAKRITVIGAGYIGIELVEAFRDLGKDVTLIDN MDRVMAKYLDPEFTGLADKELRERGVRLALGRTVEGFRGTDGKVREVVTTDGTFETDMVV LCIGFRPGTDLLKGQVDMLPGGAILVDDYMRTSHPDVLAAGDSCAVRYNPTGEAAYIPLA TNAVRMGTLAAMNLLKPAVRYQGTQGTSAIKLFDWNIASTGLTEGAAAAAGMNVKAVVIH ENNRPEFMPTYDDVMLKLVFEAEGGRLVGAQVMSKADLTQAVNTLSVCIQNRMTVQELAF VDFFFQPHYNKPWNLLNTAGLAAMQRLNETVDTAEEPERALAAAERADARPHGKYGVA >gi|333605590|gb|AFDH01000083.1| GENE 9 13727 - 13831 61 34 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSLWSYITPLLQKMQEVFMPVRDACHRYTAKSRT >gi|333605590|gb|AFDH01000083.1| GENE 10 14013 - 14615 588 200 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MMNKMIVSVLLGSLIVSGSLMLNGTAMRPALPDSGMADGKAALPGAGGTSDIKVPVPAGS VESAGEKTYAQLPVTQTANNIEVTVHAVRLKADTADFEVTIRNLSDRESIAPDLASVSVV TNEGLPGRHSEKVRAAQVNPDFEQAVIQPGKERYGWLSSGAWSEEAPERLTLNVTIRTNS GVEQAFAIPVDCRGLTFRTL >gi|333605590|gb|AFDH01000083.1| GENE 11 14636 - 15979 1151 447 aa, chain - ## HITS:1 COG:DR0779_2 KEGG:ns NR:ns ## COG: DR0779_2 COG2819 # Protein_GI_number: 15805805 # Func_class: R General function prediction only # Function: Predicted hydrolase of the alpha/beta superfamily # Organism: Deinococcus radiodurans # 30 260 17 245 255 111 30.0 3e-24 MKSLSSLLKIEQFYSAFLNNRRDLFVYLPPGYSEESGRRYPVLYVHDGQNIFHPAFNGYS WNLHETVDRLVQNGLMEEIIVVGIANMGMQRSDEFTHELEGVDYLSDKVEIRPKGQLYEQ FITDELMPYIDSLFRTKKGPEHTAMMGSSRGGQVTYHIGMRRPDLFGKLAILSPYFYCVD PVTLEEARQYHTWTDKVPLSRIWIDLGSCEGTLILEKHVREATESLLRLGYKPDDELVYY LDPTGTHSEKDWAARVASPLLHMFGKKGTPAKLSLEGEGIAGIRGPGIRLNPIAEFDSGF KMSLLRADYAAEDGTILEVREDGTLVPGREGETAVKVSYGGLSATRPIRVAGELKEHVTL ELLVHVPADTPETAALYSWIPLRREAGEPAVYSARLTVPLYAAFEYRISRGDGAVEADQA GQAVTRFYKAEADGRLELTVHSWKSPR >gi|333605590|gb|AFDH01000083.1| GENE 12 15976 - 17334 1173 452 aa, chain - ## HITS:1 COG:SP0882 KEGG:ns NR:ns ## COG: SP0882 COG2819 # Protein_GI_number: 15900765 # Func_class: R General function prediction only # Function: Predicted hydrolase of the alpha/beta superfamily # Organism: Streptococcus pneumoniae TIGR4 # 15 216 13 221 274 85 30.0 1e-16 MSSSRLIEINPFYSHTLKNERTIYVYLPPSYHSDDRKRYPVLYMQDGQHVFFKDRKGESW DVHLTVDELTAQGRMREIIVVAVSHVEDARIAEYMHANPDGHNIFNTTNQGELYETFLVR EVKPFIDSTYRTLTEKEHTALMGSSAGGLVSYNIGFRQPETFGMIGALCPFFVSVDPATM EDRWLSCVYTDKKPLKIWMDVGDAEGFTVMEKHVRQVADTLMDAGYKPGGDFMYYFAVGS GHSQKDWAARVHAPLLYFFGEIGTPVRLDLHGPERIGLQGPSCALNPVVHYDSGFMMTDL DADYEVTDPGIVEVTAEGRLLPKREGSVTVRYNGQGLTASLDLTVVPHLSDTVSVTMFVE VPVCTPKTDTLYAGIELPMIGERLYGGTFQVPRGISFEFRISRGLGKHETYASGKEIPYR KFTAREGLELSYKVEHWVDVPPVTEAKEAANG >gi|333605590|gb|AFDH01000083.1| GENE 13 17361 - 18275 828 304 aa, chain - ## HITS:1 COG:YPO0611 KEGG:ns NR:ns ## COG: YPO0611 COG1609 # Protein_GI_number: 16120937 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Yersinia pestis # 5 199 4 198 328 85 31.0 1e-16 MKKATIKDIAKAAGVSIATVSYILNDVKTQSISDETRVKVMKAARQLKYVANRTAQSLKI KKTGLIGILLFQEHEDQYWSDFKYAKTVSKIEQICGQLGYHIIFMQVRSQLSDYKMIMER NLDGVFLLNADQERFGTISNYFGFGIPVFVIDSYIDDSLFHKIIPDFAQSFRACEAALGG RPEFLVTDAYNNAKLAGFIREQSGLEDERICTYDSPEQLNEFLARFEGKPGIVINEFLAL EVLKKTTRIAAVCTCHCPQVLPGTVGRITFDLNDYQEIVHKMDRYIQDADYVDPEKFYYL SGTP >gi|333605590|gb|AFDH01000083.1| GENE 14 18308 - 20146 1522 612 aa, chain - ## HITS:1 COG:BH2927 KEGG:ns NR:ns ## COG: BH2927 COG0366 # Protein_GI_number: 15615490 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Bacillus halodurans # 6 546 5 546 578 577 51.0 1e-164 MLLEAIDHRSGQAYCYAYDERTVHIRLRTKKDDVDTVHALHGDKYDWERTALETRLYKTG SDQLFDYWQGELVPPHYRLRYAFKLTSGEEVVWLTEKGFGTEKSQDPLTFFDYPFLWPQE VLKPPAWVKEAVFYQIFPDRFANGDPANDPPGVRPWSDSDPGPYDFYGGDLQGVYDRIDY LTSLGVNAIYFTPLFEAATNHKYDTADYRKVDPAFGDTALLKKLVAAFHERGIRVILDAV FNHSGEGFAPFRDVREKGPESPYRDWFHIKEYPLRTEPRPSYHCFAFESHMPKLNTANPE VRNYLLDVAEYWVRECDIDGWRLDVANEVDHEFWREFRKKLKALKPDFYILGEIWHDAMP WLQGDQFDAVMNYPATDAILDYFAKGEIDARELGSRINRLLASYPQQVNEAAFNILGSHD TPRLLTRIPDEAKAKLAVLLQFTLPGTPCIYYGDEIGMQGGPDPDCRKPMQWDTARQNHG LLAFYRMLIELRRTRRALSEGTFRFVYAEKDQLIVLRKNAEEELYICVNNSNREASCHVF EPEPVSSAANGQSGPLPGRERGSRILPEAEVILGQGSFVRTENGLSAALPPFGWLVASVP LGRFDTGQGDML >gi|333605590|gb|AFDH01000083.1| GENE 15 20185 - 21018 886 277 aa, chain - ## HITS:1 COG:SA0209 KEGG:ns NR:ns ## COG: SA0209 COG3833 # Protein_GI_number: 15925920 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type maltose transport systems, permease component # Organism: Staphylococcus aureus N315 # 1 277 1 279 279 245 47.0 6e-65 MRKFKDNLTVMGIYLVFIALLVATVYPILWVIGTSLNPGQSLLVSRMIPDHPTFAHYAEL IKQTDFVLWYRNTVKIALVNAVVSTTLVAATAYAFSRFRFKGRQQGLMTLLILQMFPGFL SVMALFVLLLQTKLLDTHLGLILIYAGGSVSMGTWVMKGHFDTIPKSLEEAVFIDGGSHA DAFFKIIFPLSLPAVTFVALNSFITPFMDFILPQIVLRSSEKMTLAQGLYSMVATETNSS FTLFAAGAVLVALPITCLYMYFQKYLIHGITAGADKG >gi|333605590|gb|AFDH01000083.1| GENE 16 21037 - 22335 1191 432 aa, chain - ## HITS:1 COG:YPO0855 KEGG:ns NR:ns ## COG: YPO0855 COG1175 # Protein_GI_number: 16121163 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Yersinia pestis # 9 432 17 429 435 311 40.0 1e-84 MQVNPNNRRHRIRAAAGSAVLIGLGQLYNRQIVKGLLFLLSAQLFIWSYCPLALRGIAGL ISLGDVPTKVVRGKVVPGDHSIFLMINGVMTCVIVLLFIGFYALNIADAWKNGELRDRGK PVPGFRASVKQAKFKHFPYLLLLPAFVFVLFVTVIPLVFNVMIAFTNYSAPGHIPDRSLV DWTGLRTFYDLFAQKAWRSTFLGISLWNIVWAAASTITVFFSGLLLAMMINHPRIRFKKF WRTAFMLPWAVPQFISILVFRVLLNGSFGPVNGFLASLGLPPVSWLSDPTMAKASILLVN LWFSTPFLMALMAGILTTMPRDLYEAADVDGATAAQKFFGITLPLVKLATAPIFIMQFAF NFNNFNLIYLLTDGKPNNPDYYYAGSTDILISWIFKMTLNQSQFNMASAVSIIMFVFIAL FSLWNYRRMKAL >gi|333605590|gb|AFDH01000083.1| GENE 17 22372 - 23658 1178 428 aa, chain - ## HITS:1 COG:BH2019 KEGG:ns NR:ns ## COG: BH2019 COG2182 # Protein_GI_number: 15614582 # Func_class: G Carbohydrate transport and metabolism # Function: Maltose-binding periplasmic proteins/domains # Organism: Bacillus halodurans # 8 421 13 414 424 213 33.0 5e-55 MSKRLFSAGIAVLLSVTGLTGCGNDQPSPSAQPQEQGGGNAQQKELKPESGAKLVVWESK GPELDYLKTVAASFEKEYGVPVKVEPVPAIDTVKKLTTDGPAGIGADVFSAPHDQLGNAV MTGLVLENDAFGEEDKKQLLPSALEGVSYSGALYGFPTAIDTYALFYNKKAMPQAPKTYE EIVKFAETYNDPANKKFALMWDVGQLYQSYSFLAGYGGYVFGGKGTDPNDIGLNSPQAVE GAKYLQSLKKILPLNIHDINDNIITGFFQEGKTASVINGSWLISSLSKADFEFGVAPLPL LPNGEHPVSFSGIRALYVNSYTKYPDAAKLFASYATSKDHLIERFKMTAQLPPRQDVMTD PVLTSDPYAPAFLEQAKHSVPMPSIPEMGNVWVPAGTAISSLWNENQDPAAVLTKAVEQI KTAMKTTK >gi|333605590|gb|AFDH01000083.1| GENE 18 23920 - 23985 88 21 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKKKSLGFLSAGYGYSTAVFF >gi|333605590|gb|AFDH01000083.1| GENE 19 24067 - 24465 355 132 aa, chain + ## HITS:1 COG:BH3085 KEGG:ns NR:ns ## COG: BH3085 COG0251 # Protein_GI_number: 15615647 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation initiation inhibitor, yjgF family # Organism: Bacillus halodurans # 7 131 3 128 128 118 45.0 3e-27 MENSKIIRKNPAGVYSPVGNYTHITKIPRNAELYVTSGQIGADPHGNIPDSMNEQIRNTF DNIRTVLHAEELSSEHIIKVNIWATQKIDWDFLYEKWAELFGLNYPAMTVGYISELGLPE LKIEIEIWAAKV >gi|333605590|gb|AFDH01000083.1| GENE 20 24683 - 26461 193 592 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 370 571 16 221 245 79 30 4e-14 MKERQQTTDRPDRSHSIMSVRGMLKEMFVHTKAHWGLLLTGALAVLFISFCEFIIPQLTK TVIDNIIPGKKVDALLETGGLLVLTALVLGLLHFTSSYVMTVVSQKAILGLRNKLYTHTL RLDVKFFDRSRTGDLMARLTGDVNQLQELVSAESLSILADFVTFVAICGYLFYVDWQLAL LTVAPLPFLFISSRFFSLRIKSAYRRVRQISAELNNFLQDTLSGIRMIKSFASEENEEKQ FVKLSDRNRIAAVSASRLSALFSPLTDWLNYIGMTLVLLFGAWQTMQGNLTVGEVVAYLA YLRLLQAPIRSFSRLVTKIQQSAAAFERIRDILDTVPEVRDQEGAIVLPPVKGEIVFYDV DFAYDEGQPVLESFFLKLRGNETTALVGSSGSGKSTIADLIARMYDVQRGDIYIDGYPLK AVTQQSLRNQLGIVSQEVILLNGTIRENIAYGQPAASGEQIEAAARAANAHEFITALPQG YDTPIGERGVKLSGGQKQRLSIARAFLKDPRLIILDEATAALDTESEQKIQQALSRLLPG RTCLVIAHRLSTIQNADQIVVLEHGEIVEYGKHDVLLRRSGRYKELYRMQFP >gi|333605590|gb|AFDH01000083.1| GENE 21 26804 - 27832 1018 342 aa, chain - ## HITS:1 COG:BS_yesN KEGG:ns NR:ns ## COG: BS_yesN COG4753 # Protein_GI_number: 16077763 # Func_class: T Signal transduction mechanisms # Function: Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain # Organism: Bacillus subtilis # 1 338 1 360 368 100 27.0 3e-21 MYTILLVDDESTTIKLMRYMLENSRFPVLRIFEASDGKEALRMMHEYGADLVVTDISMPY MTGLELCRQLSREFRYTPAIIVSEHDKFEYVREALVCGVKDYLLKPLCKERFLSSVRRTL EELPETVHTIGETSDRWRGLADTWVEAVLQENRPVQEMTGRKWLASLQSAPPYLCLKWHS AFHRILLQSAAAKLEREVECSLHPYHGQTGAELTNWVIGDFKALQHAVKLAAYTDNQRMI YNAQKYIQQHYNKEITLEELASSVGYSAPYFSYLFKLKTGISYMAYRTQLRLKRAQELLL KSDKPMPQIASEVGYNDVTSLIRAFKKELGYTPSDYRKGGFV >gi|333605590|gb|AFDH01000083.1| GENE 22 28017 - 29357 1007 446 aa, chain - ## HITS:1 COG:BS_yesO KEGG:ns NR:ns ## COG: BS_yesO COG1653 # Protein_GI_number: 16077764 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Bacillus subtilis # 38 444 4 408 412 66 23.0 8e-11 MKRMFLLLATLLLATLLLLTTTAACGGGGRTQAPDSGGTSRGENKNGKKTVVVSMLFLDE VFREAKKKFEQKHPDVEIRLTYVQTKDNWKEGDRVKFVKSTNTEMLSGKGPDVLVLDPLP MGKYASNNALANLSGLMDQDPSFHKDLYFGNILDNLSINGALYGMPMRFILETMVGDEGA VKKAGVRIDDNVWTWNEFAETAKAMKKNGSPAAYAASPPSLLNARVKADYPAFVDEPNRK AKFDQVSFIKLLNEVKALFDGNVMANKAADASFKSIYIQNPEEFFSFPRALYKQPKLYRS PLAAGQKPGGFFLPYQTLGINENSAVKTEAWAFIKFMLSDDIQDVKGLGGFPLNKDVYGR QLDQMLKNGKVKIEDGPEEGGTVDVNPADIEYQKQLISGLSHPIPTNTSMVEDALLIESK SFFAGQKSAEEAAKEIQDRVNAYLNE >gi|333605590|gb|AFDH01000083.1| GENE 23 29698 - 29850 107 50 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MAWITKMGGKWLLAKPRCGLMYSIQGVLLNTPFMGSKRFQALRHFYELIV >gi|333605590|gb|AFDH01000083.1| GENE 24 30295 - 30408 61 37 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MGSLKNPMFVQAILTFVILFISKQTHPENELKNLFNF >gi|333605590|gb|AFDH01000083.1| GENE 25 30625 - 30897 264 90 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|332975398|gb|EGK12292.1| ## NR: gi|332975398|gb|EGK12292.1| hypothetical protein HMPREF9374_1612 [Desmospora sp. 8437] # 1 87 192 274 279 70 52.0 3e-11 MNEPVLKKAMDTLEFLSQDAEARRLYEDRQKYLHDKASMIEEALAEGEARGEKRKAIQMA LELLKHGVDTAAIAKSSGLSEEEIIALRKQ >gi|333605590|gb|AFDH01000083.1| GENE 26 30924 - 31010 77 28 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKAKDGLTVVNVKEFVVPAQFAYSNKMK >gi|333605590|gb|AFDH01000083.1| GENE 27 31163 - 32314 822 383 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_3132 NR:ns ## KEGG: Pjdr2_3132 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 16 366 21 363 393 137 29.0 9e-31 MTKRSMLSLPLLLAALAMPAGCAGLPKAKTIVMGDTAVDAHTEEESTDFETNKIYKLSLP GNKAVDVWGWMSSRLLLGSYKNQETKLDIQLVDYRNLSAVSLTPLAGDAQTGKPSPDGKY MAYTGQSSTGETLYILDLNTSQSFAPGIPDKWKGITSAMTWSNNGRYLSFTVKSREYGTE SIVVYDMNSRTSQEIPLPRWQENSEAPAPRVLKRDSKYTVISVKFADDGSTALMGRIGED GSYVTLGAVTEDKWTRKFEHSASERQFDYVNDSQIIFLDAKNTLTLYDERDENTVALSAG VSTFRLSGDNKTIAYAKDEESLYVAKLQGHNMIKEKLVYKGLVLSQMDWSPDNKKILITG WKSYDRAPATGNPEQTPLVIEFK >gi|333605590|gb|AFDH01000083.1| GENE 28 32311 - 33777 1520 488 aa, chain - ## HITS:1 COG:BH0373 KEGG:ns NR:ns ## COG: BH0373 COG0642 # Protein_GI_number: 15612936 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Bacillus halodurans # 177 480 160 449 459 132 32.0 1e-30 MFSTIRAKFLIGLFAIFSVSFLLLNHFVVRIIETSNEKIITQDLIQLKNNSSIYVKQAFL INHFNTDDMYFQQMAEEMVRDLNHVTSSHTSAYSVAGDLIFASDEAKFLSANADDLQYAL DGKTAYRIQYTDEKAEVFYAYPVIVEGKKVGILRFGKDFSLLYEQRKHILDVFSSVTIAI FIAAFVFSYLLSRNITIPLIKLTKASSEVTNGNLNIKIGFRRKDEIGQLAHNFGNMIVQI KKQIQRIKKDRDRLEELNRHRKQFFDHVTHELKTPLTSIIGYAELIREVGSRDEAFFAKG MNHIVSESKRLHEMVLQLLTLSRETGGQDAAETIEPGHILRDVCDGMLLKAQKYNKFIHC EADENLSLVADPAKIRQLYINIIDNAIKYGRSPSTVHVKAEKLPGFVRISVKNEGETIPS GELAKIFEPFYRVSGPADGEAGSSGLGLSISKAIVDGLGGTIGIRSAEQVTAVLIELPYE AAGEGEAG >gi|333605590|gb|AFDH01000083.1| GENE 29 33782 - 34501 756 239 aa, chain - ## HITS:1 COG:BH3157 KEGG:ns NR:ns ## COG: BH3157 COG0745 # Protein_GI_number: 15615719 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Bacillus halodurans # 13 236 4 234 239 191 44.0 1e-48 MEKTREKTREKTRLLIIEDEEAIADLLAYGLNREGFEAFTAHSAAEGLLKIGQVRPDLLL LDWMLPDLSGLEVCRQVTAAYKIPIIMITAKSDITDKIQGLEYGADDYMTKPFDLREVAV RIRTVLRRVSQANVTPEAPAGAVIRFRDIEIVEHERIVTIGDEAVDLTPKEFDLLLTLCK YKGKIFTRTELLDFVWGYDYTGDTRTVDIHIQRLRKKLGAGDLIVTVFGVGYKFEKQVD >gi|333605590|gb|AFDH01000083.1| GENE 30 34699 - 35919 942 406 aa, chain - ## HITS:1 COG:CAC3506 KEGG:ns NR:ns ## COG: CAC3506 COG0477 # Protein_GI_number: 15896743 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Clostridium acetobutylicum # 16 394 13 388 392 182 32.0 1e-45 MSNQTQLTNASVVRRNYSLMTVILCWSGLAVMSSLYVTIPLISVFARLYDITPTEAAAAG STFSIGFALGCLIYGALSDKYGRKKVIFTGLLVLTLISLLLGTVHTFAWIVVLRGLQGAA AATFSPVALAYAVEMYPAEKRVTTIGFISTGFLTAGIVGQVLSSLISEQYGWNAVFYVLA GVYALTAVLVYVFLPKGGAQQAHANIWEPIRQIGQVFVRKQLVLSYVVAFVLLMSFVNMY TVLGSYLSGAPFDLDKQGVLVVRSIGIAAMLLSPFAGRVSKRFGIHMTLRGSLALAAAGL ASMGLISSLPVLVAVSLVFVASIALAVPSLVSLVGQLGGKLRGIAVSVYTFVLFAGTSFG PVLSLSFMKSFSYPVTFLLLASILCIGLAAACLIGREEPLEIKKSR >gi|333605590|gb|AFDH01000083.1| GENE 31 35991 - 36545 541 184 aa, chain - ## HITS:1 COG:BS_yetL KEGG:ns NR:ns ## COG: BS_yetL COG1846 # Protein_GI_number: 16077789 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 56 169 43 155 167 58 28.0 5e-09 MNRKPAKEYSTEQQLPRLGTKPYLDLLERTANSDTDRDSALTGLLMLWLGDSVLDVMDIH LSDYDITESKMDILLLISLHQDKELVTPSSIADRLGIRRSSVTSLLNWLDKRDLIIREPY SKDGRMTHIRLSPEGSELVKRVLPEFWSTCASLVEELDKEEQELFNRMLVKLNRGIEKRL GTGR Prediction of potential genes in microbial genomes Time: Sun Jul 17 09:38:03 2011 Seq name: gi|333605512|gb|AFDH01000084.1| Paenibacillus sp. HGF7 contig00013, whole genome shotgun sequence Length of sequence - 76148 bp Number of predicted genes - 70, with homology - 66 Number of transcription units - 42, operones - 13 average op.length - 3.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 2660 2543 ## COG0069 Glutamate synthase domain 2 - Prom 2838 - 2897 8.0 2 2 Tu 1 . - CDS 3042 - 3569 533 ## COG1434 Uncharacterized conserved protein - Prom 3747 - 3806 4.0 3 3 Tu 1 . + CDS 3917 - 4495 489 ## COG1435 Thymidine kinase 4 4 Tu 1 . + CDS 4602 - 5708 979 ## COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase + Term 5760 - 5801 -0.4 + Prom 5784 - 5843 2.1 5 5 Op 1 7/0.000 + CDS 5957 - 6940 810 ## COG0739 Membrane proteins related to metalloendopeptidases 6 5 Op 2 . + CDS 6942 - 7382 434 ## COG1664 Integral membrane protein CcmA involved in cell shape determination 7 5 Op 3 . + CDS 7467 - 8345 797 ## BMD_3689 hypothetical protein 8 5 Op 4 . + CDS 8430 - 9779 1289 ## COG3349 Uncharacterized conserved protein + Term 9795 - 9835 1.6 - Term 10104 - 10139 6.5 9 6 Op 1 21/0.000 - CDS 10166 - 11215 1368 ## COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components 10 6 Op 2 24/0.000 - CDS 11252 - 12016 884 ## COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component 11 6 Op 3 . - CDS 11949 - 12788 789 ## COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component - Prom 12899 - 12958 9.3 - Term 12906 - 12940 4.6 12 7 Tu 1 . - CDS 13141 - 15495 2142 ## COG2205 Osmosensitive K+ channel histidine kinase - Prom 15620 - 15679 6.3 - Term 15690 - 15732 5.0 13 8 Tu 1 . - CDS 15822 - 16439 585 ## COG2156 K+-transporting ATPase, c chain + Prom 16122 - 16181 2.3 14 9 Tu 1 . + CDS 16360 - 16539 92 ## 15 10 Op 1 20/0.000 - CDS 16575 - 18620 2514 ## COG2216 High-affinity K+ transport system, ATPase chain B 16 10 Op 2 . - CDS 18641 - 20320 1938 ## COG2060 K+-transporting ATPase, A chain 17 11 Op 1 . - CDS 20455 - 20565 158 ## 18 11 Op 2 . - CDS 20646 - 21086 375 ## GYMC10_0430 hypothetical protein + Prom 21852 - 21911 5.0 19 12 Op 1 9/0.000 + CDS 21947 - 24037 2624 ## COG1966 Carbon starvation protein, predicted membrane protein 20 12 Op 2 . + CDS 24030 - 24233 171 ## COG2879 Uncharacterized small protein + Term 24311 - 24347 2.0 - Term 24261 - 24308 13.4 21 13 Tu 1 . - CDS 24348 - 25244 968 ## COG1284 Uncharacterized conserved protein - Prom 25350 - 25409 3.6 - Term 25391 - 25431 1.3 22 14 Op 1 . - CDS 25565 - 25954 351 ## COG2315 Uncharacterized protein conserved in bacteria 23 14 Op 2 . - CDS 25951 - 26109 86 ## 24 14 Op 3 25/0.000 - CDS 26177 - 27895 1923 ## COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) 25 14 Op 4 3/0.125 - CDS 27888 - 28160 360 ## COG1925 Phosphotransferase system, HPr-related proteins - Prom 28194 - 28253 3.8 - Term 28202 - 28244 -0.8 26 14 Op 5 . - CDS 28256 - 30316 2263 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific - Prom 30544 - 30603 8.2 - Term 30702 - 30731 0.2 27 15 Op 1 6/0.000 - CDS 30920 - 31321 343 ## COG1146 Ferredoxin 28 15 Op 2 . - CDS 31318 - 33015 1380 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit 29 15 Op 3 21/0.000 - CDS 33072 - 34088 1280 ## COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components 30 15 Op 4 2/0.125 - CDS 34167 - 35018 1127 ## COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component 31 15 Op 5 24/0.000 - CDS 35034 - 35906 823 ## COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component 32 15 Op 6 . - CDS 35925 - 36701 781 ## COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component - Prom 36846 - 36905 7.0 - Term 36904 - 36943 5.1 33 16 Op 1 . - CDS 37006 - 37908 1022 ## COG3711 Transcriptional antiterminator 34 16 Op 2 . - CDS 37997 - 39133 896 ## GYMC10_1609 polysaccharide deacetylase 35 16 Op 3 3/0.125 - CDS 38991 - 39674 221 ## COG0726 Predicted xylanase/chitin deacetylase 36 16 Op 4 1/0.250 - CDS 39667 - 40881 1259 ## COG0477 Permeases of the major facilitator superfamily 37 16 Op 5 . - CDS 40887 - 42029 969 ## COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase 38 16 Op 6 1/0.250 - CDS 42100 - 43269 1168 ## COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase - Prom 43301 - 43360 5.8 - Term 43427 - 43474 7.2 39 17 Tu 1 . - CDS 43563 - 44420 604 ## COG0463 Glycosyltransferases involved in cell wall biogenesis - Prom 44551 - 44610 4.0 + Prom 44578 - 44637 6.3 40 18 Tu 1 . + CDS 44757 - 45455 679 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain + Term 45553 - 45588 7.4 - Term 45488 - 45522 -0.3 41 19 Tu 1 . - CDS 45569 - 47419 1507 ## COG0642 Signal transduction histidine kinase - Prom 47553 - 47612 5.4 + Prom 47499 - 47558 4.8 42 20 Tu 1 . + CDS 47654 - 47893 354 ## gi|167465632|ref|ZP_02330721.1| hypothetical protein Plarl_24238 + Term 47905 - 47932 1.5 + Prom 48156 - 48215 5.2 43 21 Tu 1 . + CDS 48251 - 48910 653 ## COG1564 Thiamine pyrophosphokinase + Term 49064 - 49121 25.4 - Term 49046 - 49113 28.1 44 22 Tu 1 . - CDS 49234 - 49764 602 ## BcerKBAB4_2443 metal-dependent hydrolase - Prom 49787 - 49846 4.5 + Prom 49926 - 49985 5.2 45 23 Op 1 7/0.000 + CDS 50194 - 50895 767 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins 46 23 Op 2 . + CDS 50879 - 52213 445 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 + Term 52268 - 52321 10.2 + Prom 52400 - 52459 1.7 47 24 Tu 1 . + CDS 52561 - 54144 1590 ## BBR47_15000 hypothetical protein + Term 54251 - 54292 10.0 - Term 54230 - 54289 17.6 48 25 Op 1 1/0.250 - CDS 54394 - 54849 513 ## COG1846 Transcriptional regulators 49 25 Op 2 . - CDS 54872 - 55351 619 ## COG0386 Glutathione peroxidase - Prom 55415 - 55474 7.0 50 26 Tu 1 . - CDS 55604 - 56341 866 ## COG0528 Uridylate kinase - Prom 56479 - 56538 5.9 - Term 56353 - 56395 6.1 51 27 Tu 1 . - CDS 56551 - 57054 401 ## COG1522 Transcriptional regulators - Prom 57074 - 57133 4.4 + Prom 56974 - 57033 5.2 52 28 Tu 1 . + CDS 57147 - 57707 593 ## COG1335 Amidases related to nicotinamidase + Term 57720 - 57757 -1.0 + Prom 57726 - 57785 3.8 53 29 Tu 1 . + CDS 57917 - 58384 382 ## GYMC10_2519 YncE + Term 58463 - 58499 7.2 - Term 58450 - 58487 8.2 54 30 Tu 1 . - CDS 58516 - 59712 1368 ## COG0477 Permeases of the major facilitator superfamily - Prom 59841 - 59900 3.7 - TRNA 59858 - 59929 77.8 # Thr CGT 0 0 + Prom 60073 - 60132 3.5 55 31 Tu 1 . + CDS 60179 - 61405 977 ## COG1533 DNA repair photolyase + Term 61445 - 61484 8.2 + Prom 61433 - 61492 2.8 56 32 Op 1 1/0.250 + CDS 61548 - 62210 740 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 57 32 Op 2 7/0.000 + CDS 62283 - 63182 223 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 + Prom 63224 - 63283 6.1 58 32 Op 3 . + CDS 63328 - 64800 1889 ## COG0531 Amino acid transporters + Term 64861 - 64890 1.1 - Term 64845 - 64881 0.4 59 33 Tu 1 . - CDS 65076 - 67079 2032 ## COG0840 Methyl-accepting chemotaxis protein - Prom 67133 - 67192 2.8 - Term 67214 - 67256 8.6 60 34 Tu 1 . - CDS 67283 - 67609 474 ## COG2076 Membrane transporters of cations and cationic drugs - Prom 67648 - 67707 4.0 - Term 67675 - 67715 9.4 61 35 Tu 1 . - CDS 67750 - 68745 861 ## BCB4264_A3236 hypothetical protein - Prom 68801 - 68860 3.1 + Prom 69440 - 69499 5.9 62 36 Tu 1 . + CDS 69629 - 69829 187 ## COG1278 Cold shock proteins + Term 69844 - 69904 9.4 + Prom 69871 - 69930 2.7 63 37 Tu 1 . + CDS 69958 - 70164 87 ## BBR47_50790 hypothetical protein - Term 70175 - 70230 5.4 64 38 Tu 1 . - CDS 70291 - 71484 1116 ## COG2124 Cytochrome P450 - Term 71505 - 71557 2.0 65 39 Tu 1 . - CDS 71600 - 72541 852 ## COG0657 Esterase/lipase - Prom 72684 - 72743 3.5 - Term 72769 - 72805 3.0 66 40 Op 1 . - CDS 72933 - 73484 568 ## COG2094 3-methyladenine DNA glycosylase 67 40 Op 2 . - CDS 73499 - 73975 605 ## DSY4341 hypothetical protein - Prom 73996 - 74055 2.2 + Prom 73967 - 74026 2.0 68 41 Op 1 . + CDS 74153 - 74539 84 ## GC56T3_1757 hypothetical protein 69 41 Op 2 . + CDS 74562 - 74990 426 ## - Term 75007 - 75038 -0.5 70 42 Tu 1 . - CDS 75062 - 75967 891 ## COG3394 Uncharacterized protein conserved in bacteria - Prom 76022 - 76081 4.3 Predicted protein(s) >gi|333605512|gb|AFDH01000084.1| GENE 1 2 - 2660 2543 886 aa, chain - ## HITS:1 COG:sll1502_2 KEGG:ns NR:ns ## COG: sll1502_2 COG0069 # Protein_GI_number: 16329610 # Func_class: E Amino acid transport and metabolism # Function: Glutamate synthase domain 2 # Organism: Synechocystis # 394 886 1 492 801 607 59.0 1e-173 MNRNASPSKQGLYDPRFEHDACGIGFVANMKGRPSHEIVGQALNVLCNLDHRGGQGSEAN TGDGAGILLQIPHGFLSKVCAEENISLPEAGTYGVGMAFLPQELEARQQCERIAERIIKE EGQQFLGWRTVPTDNATLGESAKASEPFVRQLFIARSGDIQDELNFERKLYVIRKRMENE TRALDNAPLYFPSLSSRTIVYKGMLTPEQVDAYYTELQDPSFETAMALVHSRFSTNTFPS WERAHPYRYVIHNGEINTLRGNVNWMHARQAMIQTDLFGENFQSLLPIVDNDGSDSQILD NTLEFLTLSGRSLPHAAMMMVPEPWSKHETMDPAKRAFYEYHSTLMEPWDGPAAISFTDG RIIGALLDRNGLRPARYYVTHDDLIVLSSEVGVLSIEPERIARKERLQPGRMLVVDTVAG RILTDEEIKGQIINEQPYQEWLKKHLVSIGELPEAASEPQPDHDLLVQRQQAFGYTFEYL RKFLEPMAKTGVDPIGSMGYDAPLAVLSERPQLLYSYFKQLFAQVTNPPIDSNFEEIVTA QETTIGPERNLIRPEAESCRQVRIPTPVISNEELAKLRHIKREGFKSVTLKTLFQASSGS QGLEQAMEELYTAADEAITDGATFLILSDRGMDGEQAAIPALLAVAGLHHHLIRQGTRTK ASLVVESGEPREVHHFALLLGYGAGAINPYLAFETLKDMIGNGQIRDITEEKASYNYIKA STKGVVKVLAKMGISTIQSYRGAQIFEAVGLSQEFVDRYFTWTYTPVEGIGLDGVAQETL QRHQRAYSPRDGRDRVLDAGGELQWRQDGEDHVFTPETIHSLQTAVRNNDYSMYKKFAEL INRESKKAASLRGLLKLKSDRSPVPVSEVEPIEAIFKRFKTGAMSF >gi|333605512|gb|AFDH01000084.1| GENE 2 3042 - 3569 533 175 aa, chain - ## HITS:1 COG:all1816 KEGG:ns NR:ns ## COG: all1816 COG1434 # Protein_GI_number: 17229308 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Nostoc sp. PCC 7120 # 5 141 46 184 215 89 35.0 2e-18 MSGWIHYVGENSHGTESDTIIILGAAVWNGKPSNAMKERLDIAVEAYRSGLAKNIIATGG TTTSEPTEASVMRSYLVGKGIPESAVFLEDESTSTIENLDNSRKIMEREKWETAIIVTHG FHTYRSLLMARSLNMNVTAEPVRIKPVAIYYYTLRECAGITYFMGERLLKTIGIG >gi|333605512|gb|AFDH01000084.1| GENE 3 3917 - 4495 489 192 aa, chain + ## HITS:1 COG:L184871 KEGG:ns NR:ns ## COG: L184871 COG1435 # Protein_GI_number: 15672575 # Func_class: F Nucleotide transport and metabolism # Function: Thymidine kinase # Organism: Lactococcus lactis # 1 182 1 184 189 241 60.0 8e-64 MAKLYFRYGTMNSGKSIEVLRTVHNYEEQGKKVLLFTPSVDDRSGVGIVASRIGMQKSAI VIQDGVNMKELAAKERPNCILIDEAQFLNAGQIEQLAEIADDLNIPVIAYGLRADFMGQL FEGSASLFAIADKIEEIKTVCWYCDKKATMNMRCKDGVPIFHGEQIQIGGNESYIPVCRK CYTDKKREAEQH >gi|333605512|gb|AFDH01000084.1| GENE 4 4602 - 5708 979 368 aa, chain + ## HITS:1 COG:CAC2897 KEGG:ns NR:ns ## COG: CAC2897 COG0707 # Protein_GI_number: 15896150 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase # Organism: Clostridium acetobutylicum # 5 317 2 316 384 201 34.0 2e-51 MRKKRILLLSEGFGSGHTQAAHALASALRRTNPGLIIRVLELGAFLHPTIAPWIFTAYRK TVVSQPKLYGKLYRSQSKKPLNGFLQHALHRIFYRKAEAVIEQLRPDIIICTHPFPNLIV SRLKKKLGLNIPLCTLLTDYDAHGSWINDEVDRYFVSAPDVKRRLVAKGVSSRRIKVTGL PVHPSISEQYSVDEIYLEFGLRDMPTVMLMGGGWGLLDEKLLKRIVQWRDRVQLLFCLGT NEKARQQLQSSELYRHPNIHLFGYTREIGKLMEVSDLLITKPGGMTCTEAMIKGVPMLFY NPIPGQEEENCQYFTEHGYGEELTSLSELDGYFTRFMENRRDKNKNTRKGSSRRLSSLFA KSVMQMLR >gi|333605512|gb|AFDH01000084.1| GENE 5 5957 - 6940 810 327 aa, chain + ## HITS:1 COG:SMc00539 KEGG:ns NR:ns ## COG: SMc00539 COG0739 # Protein_GI_number: 15965497 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane proteins related to metalloendopeptidases # Organism: Sinorhizobium meliloti # 167 319 249 402 413 117 42.0 2e-26 MKTKEDKKELTLMFIPGADKRVVRFRIPRISLYAVPSAAALVILGFSLTIYVQNTSHRST TEQLTETFTGQEKQLTEQLMLKDTELEKLQIELIDLSKQAEQFKSKLEEIRKLENKISPG TAASSGKGTAPPPSLAPDVGGTEAPAGTREMNELAAQTRSSLSGMIGDIDGLLVQLTESE RKLQEARRLKRITPTIWPSDSRTVTSAFGVRQDPFTGKPNVHTGLDIDGELNDPVYAAAD GTVTAAGYDSQHGNHIRIDHTRGIETEYLHLNKMEVQAGSTVRKGQIIGRVGTTGRSTGT HLHYEVHKNGTKINPSPYLISDRKDDN >gi|333605512|gb|AFDH01000084.1| GENE 6 6942 - 7382 434 146 aa, chain + ## HITS:1 COG:BB0245 KEGG:ns NR:ns ## COG: BB0245 COG1664 # Protein_GI_number: 15594590 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Integral membrane protein CcmA involved in cell shape determination # Organism: Borrelia burgdorferi # 16 110 24 118 184 64 33.0 7e-11 MVFDKKRNTDNKTTDTIIGESTVCEGKILSEASLRIEGQVLGDIECAGDIVIGENAVVHS SIQARDVTIAGKVNGNVATKGKLTVMSTGELIGNIQVRAFIMQEGGVFQGTSTMTASGQD DKAPSPISSAPSAKNRKDEQSLASAN >gi|333605512|gb|AFDH01000084.1| GENE 7 7467 - 8345 797 292 aa, chain + ## HITS:1 COG:no KEGG:BMD_3689 NR:ns ## KEGG: BMD_3689 # Name: not_defined # Def: hypothetical protein # Organism: B.megaterium_DSM319 # Pathway: not_defined # 7 266 2 261 271 234 45.0 4e-60 MAPTPKLSVWTEHRFWLGILYDHATFVWQALAPSEQPLIQTANGFRQAFAALVKQVELTP QDLPVSSPVMIKLAQDILPAASGYYQFEGHIQSLRISNKIVLELTPSYFNGTLIENEEYL RLLSFWTRGVEAEELTLYGLLDMWLEDQLGHAVLLWDHLDPVEIELSEQARRYSNTFQAY MVKNRAMGGYLRFTPPGFPAQRRFAADVAVAIINFYDFVVKVIDMYVDEELLSRLTLRFL DHHLPESCYFLNKLAVYEPNLKIPGNCFLYKPLAPNENIPYPELTPPQPRED >gi|333605512|gb|AFDH01000084.1| GENE 8 8430 - 9779 1289 449 aa, chain + ## HITS:1 COG:alr1832 KEGG:ns NR:ns ## COG: alr1832 COG3349 # Protein_GI_number: 17229324 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Nostoc sp. PCC 7120 # 10 443 5 453 479 164 27.0 2e-40 MNDSQFDTLIVGSGLAGLSCAFELAEQGQRVHIIEAAPFAGGRTSNWSDAGMEVESGFHK FIGFYEALPNLLKRARIKPNSMLTWEKTFEIRLPDGETAGEFGIAPLKSPIKTIAGAFTN NDIISPADKASLMPFVAEGLKLLSENRMELDTYSVAEFARKHGVKDEALRHVLGPLTSGV LFLPPEDYSALVFFGLFAPGVPKFYKMQIGGFNGGMTDVMINPLLAALEKRGCRISLSTP AEGLSLEDGRVTGVSLQEGGTLSAAHVVIATEISAAKRLLQPPFGGEAWYQPLRELPTMP DVTIQLELSEPLLPQDRVTFGPGTCIGSFSEQSRTTFPHVPGRVSMILAPPDEFIGMPDD LVFERVCADADKLGLDLRAKAKDYRVIRRPDHFYSVRPGSEKLRPEQRTPVPGLALAGDY TRQPMFATMEGAVLSGRKAAEAVLGRELG >gi|333605512|gb|AFDH01000084.1| GENE 9 10166 - 11215 1368 349 aa, chain - ## HITS:1 COG:DR1655 KEGG:ns NR:ns ## COG: DR1655 COG0715 # Protein_GI_number: 15806658 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components # Organism: Deinococcus radiodurans # 36 346 33 337 337 209 39.0 8e-54 MKKTAWLLALILLVGTVLTACGGGDSKSSGGSGDGKKPETVRVGIFKNVTHAAGYVALEN KYFEKYWGEGVKVEVTAFDNGSDFSTALATDQIDLGFVGPGPSTNQYLKSKNFKVISGSN NGGAVLAVRKDAGISSVKDLVGKTVAIPTRGSTNEISLRLLLQQEGLKVTTDKSGVEIIA RAPADTLVAMRQKEVDATLIPEPWGTQMEKEGIGQILVDWDKIPPNNGNYPLTILVASDK FLKDHRDMAKGAIQANIDAINFIKSSPDKSYDLINNQLKKLSGKGLDNELIKAALSRLNL TADVNKEAIEEMAKVSIDAGFIKNVKKEELDLSKFLDLSLLDEVKKEKK >gi|333605512|gb|AFDH01000084.1| GENE 10 11252 - 12016 884 254 aa, chain - ## HITS:1 COG:CAC0108 KEGG:ns NR:ns ## COG: CAC0108 COG0600 # Protein_GI_number: 15893404 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type nitrate/sulfonate/bicarbonate transport system, permease component # Organism: Clostridium acetobutylicum # 5 249 12 261 265 189 38.0 5e-48 MSTALRRTIFLVILLIAWEAGYRIFDWGWKFPSLFQTLDAFRLGLTDGQLVEATLRSLGR LLTGFCISLVVGTLLGFLFARFRFLDDTLGFVVVALQTVPSIAWLPFAIIWFGLTDTSVI FITALGATWTMAMSSRTGIMNIPPIYLKAAQTMGTGNGLRMFWQIMVPAAFPHLINGVRV AWAFAWRALVAGELIAKGVGLGQLLQQGRDIADTALMLCIVIIIAVLGTISDHLCFKKLE DKILLRYGLASSGK >gi|333605512|gb|AFDH01000084.1| GENE 11 11949 - 12788 789 279 aa, chain - ## HITS:1 COG:BH1211 KEGG:ns NR:ns ## COG: BH1211 COG1116 # Protein_GI_number: 15613774 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component # Organism: Bacillus halodurans # 2 260 4 262 264 294 57.0 1e-79 MIQIKHVRKTFKQRSSGSFTAIDDVSLTIRKGEFVSLLGPSGCGKSTVLNMVAGLEGYDE GTIEVNGTKVTGPGSDRVVVFQEHALFPWLTVLDNVAFGLKQKGIPKKERYEKAMEQIKT VHLSKFADRYPHELSGGMKQRAAIARALAMDPEILLMDEPFAALDEQTRLILHKELEEIW MKTGKTILFITHNIREAVILSDRVVVMSTRPGTIKKEFAVQAARPRDNADSVIHHVESAI MDVLAEELEKVVKEEMGDEYSLKKNDFSRDSADSVGGGI >gi|333605512|gb|AFDH01000084.1| GENE 12 13141 - 15495 2142 784 aa, chain - ## HITS:1 COG:mll3127 KEGG:ns NR:ns ## COG: mll3127 COG2205 # Protein_GI_number: 13472735 # Func_class: T Signal transduction mechanisms # Function: Osmosensitive K+ channel histidine kinase # Organism: Mesorhizobium loti # 401 783 10 398 907 292 43.0 2e-78 MDNFRRKTPEEILLSISEIHRGRLKIYIGAVSGSGKTYHMLREGQTLREQGIDVVLCAVS MEGRPETMEQAGGLERVESIEWMKDGVRQQDLPLDDLAARNPEVVLTDGLAHRNRPGALY PTRLEDIKFLLSKGISVLATVNVYELEGVRELARKMTGIVVEHTVPADTLELADEVRLID ATPETILNRLEEGGMRGCQWYERKVLERGNIGVLRELALRLVAEGVNESLEKHRGEMGMT GPSGADERILVSAQYHWNGSIYVRRGQQIADRLSGDLFVVSFTAPGKALSKDAATFRRSI IKLVEKVGGTFEELPFPGRRKLAQALIRYGIDRKVTRIVLGHSKHSRWQEFWQGSVLNDA VSRLQGIDLFVVADRAERDGERILPVKRKSDARPPVELYRRPSPQEMERQIRKARRGRFK VYIGAAPGVGKTYSMLREGNDLLRKNIDVVIGLLELHGRKETADQVGDLELIPRKISTYR GTELQEMDTEAVIRRMPDLVLVDELAHTNVPQSVNKKRYEDILEILNAGISVISTVNVQH LESLNDSVEQLTGVRVRETVPDSILRLADEVELIDVTPQTLRQRMKEGKIYGMDKVDQAL GHFFKTVNLIALRELALREIADDVDERLEAWERVGSLRGPWRREEVIFVCVKLNQHAERI IRRGFRIAYRLKARWHVAYIRSGSAVGDEEARIAALQTLTERLGGRFEVLGAAGRRRTAD GLLARALELSATQLIIGQARESLWERLFHGSIVKRIMRGARSMDVLVVAESESARVRRGR QSRG >gi|333605512|gb|AFDH01000084.1| GENE 13 15822 - 16439 585 205 aa, chain - ## HITS:1 COG:CAC3680 KEGG:ns NR:ns ## COG: CAC3680 COG2156 # Protein_GI_number: 15896912 # Func_class: P Inorganic ion transport and metabolism # Function: K+-transporting ATPase, c chain # Organism: Clostridium acetobutylicum # 22 202 8 197 205 174 45.0 1e-43 MNPGASVPKENGEWNGSVLSIAVRVSILLIVLCGIIYPLVSTGLAQVIFPKQANGSVIQN EQGEVVGSELIGQLFADPKYFHGRVSSIEYKAEASGSNNYAPSNPELVKRTQESIESWKK ENPDVPVNQVPISLLTNSASGLDPHITPESAQVQIPRIAKVTGVSTAQLQELVKKNTDGR DLGIFGEPRVNVLELNLDVKKLAGK >gi|333605512|gb|AFDH01000084.1| GENE 14 16360 - 16539 92 59 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLTRTAIDKTDPFHSPFSLGTEAPGFILFQSSLLYRGKPARGIPGMWLLGLQGIFMPFT >gi|333605512|gb|AFDH01000084.1| GENE 15 16575 - 18620 2514 681 aa, chain - ## HITS:1 COG:CAC3681 KEGG:ns NR:ns ## COG: CAC3681 COG2216 # Protein_GI_number: 15896913 # Func_class: P Inorganic ion transport and metabolism # Function: High-affinity K+ transport system, ATPase chain B # Organism: Clostridium acetobutylicum # 7 677 2 675 685 825 66.0 0 MSSNASQAKRKSMLSGDIVRQAVAQSFLKLNPVTMMKNPVMFVVEIGTFIVLLMTVLPGY FGTQDRIGFNLTVFLILLFTVLFANFAEALAEGRGKAQADSLKKSKQEIQANKVVGSGIK VVPSTELRKGDIVTVAQGEMIPGDGEVIEGLASVDESAITGESAPVIKEAGGDFSSVTGG TRVVSDAIRVRITSDPGESFIDRMISLVEGASRQKTPNEIALNTLLITLTLIFLIVVVTL KPIAGFVNVELDTAVLIALLVCLIPTTIGALLSAIGIAGMDRVTQFNVLAMSGKAVEAAG DINTIILDKTGTITFGNRMASEFIPVGGASAGEAAAWAAVSSIKDETPEGRSVLELMKKQ NLVYEASLAEGGEFIDFKAETRMSGIDLKDGRKVRKGAVDAVVRWVQEQGGTVPADLKAN GDAIATEGGTPLAVAVDGRVYGLIYLKDTVKPGMKERFDTLRQMGIKTIMCTGDNPLTAA TIAKEAGVDGFIAESKPEDKIAVIRKEQAEGKLVAMTGDGTNDAPALAQADVGLAMNSGT IAAKEAANMVDLDSDPSKIIEVVGIGKQLLMTRGALTTFSIANDIAKYFAIIPAMFMLAI PQMEALNIMKLGSPLSAVLSALIFNAVIIPLLIPLAMKGVKYRPMSSTKLLSRNLFVYGL GGVVVPFIGIKIIDLVVHVWI >gi|333605512|gb|AFDH01000084.1| GENE 16 18641 - 20320 1938 559 aa, chain - ## HITS:1 COG:CAC3682 KEGG:ns NR:ns ## COG: CAC3682 COG2060 # Protein_GI_number: 15896914 # Func_class: P Inorganic ion transport and metabolism # Function: K+-transporting ATPase, A chain # Organism: Clostridium acetobutylicum # 1 558 1 557 557 585 56.0 1e-167 MEIVQIVIVIAALCLLVKPLGTYIYHVFSNERNRTDKWFGWLERPIYKLAGIRSENGMTW KKYAGSLVLTNIVLVAVGYLILRLQRALPLNPNGIDNMEATLSFNTIISFMTNTNLQHYS GETGLSYFSQMAVIMMMMFTSAVTGIVVAIAFIRGLTSKGNTIGNFFTDFVKGHTRLLLP LAIVVTLVLVGLKVPQTLDPTVAAKTLEGGEQQIAIGPVASLVSIKHLGTNGGGFFGVNS SHPFENPSPLTNVIEMLSMWCIPASLTYTFGRFAKNRKQGWVIFTAMMTLFLVFLSVAFF SEKAGNPALNALGADSSIGSMEGKEVRFGIAQSALFTTVTTAATTGTVNNMHDTLTPLGG MVPLAQMMLNCVFGGDGVGLVNMLMYAILAVFLAGLMVGRTPEFLGRKIESREMKLIAVA ILAHPLIILAPTAIAFMTELGKGAVTNPGFHGISQVLYEFTSSAANNGSGFEGLADNTPF WNISTGIVMLLGRYVSIIALLGAAGSLGRKQWVPETIGTFRTDNALFTGIVVGTVVIIGA LTFLPVIALGPVAEYLTLR >gi|333605512|gb|AFDH01000084.1| GENE 17 20455 - 20565 158 36 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTDLYMILLLAVIYLIFYGFLTWCDHVVEGSEGGRT >gi|333605512|gb|AFDH01000084.1| GENE 18 20646 - 21086 375 146 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_0430 NR:ns ## KEGG: GYMC10_0430 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 5 135 3 133 136 150 52.0 2e-35 MDERKIQTYTLVSAPNVTGENFIKLLNIYRRPFAALVNNPAEGQRMKKLGVRHIVEVDTV RHEAWEVPELPIGDVYLFEDSLPLCCRYLQMVRSWTTGTIFVVKTNATPRLIYKALGADH VVHTNTRQVSFLLGAAPGQVPEEVLR >gi|333605512|gb|AFDH01000084.1| GENE 19 21947 - 24037 2624 696 aa, chain + ## HITS:1 COG:YPO2234 KEGG:ns NR:ns ## COG: YPO2234 COG1966 # Protein_GI_number: 16122463 # Func_class: T Signal transduction mechanisms # Function: Carbon starvation protein, predicted membrane protein # Organism: Yersinia pestis # 6 689 5 687 688 836 62.0 0 MKIGWKSILLWGVISIVGAFAFGLVALNRGETINAAWLVIAAVSCYAVAYRFYSRFLARK VFVLDDNRKTPAELNNDGKDYVPTNKWVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGTLW IILGVILGGAVQDFVILFASTRRNGKSLGDMIKDEIGKVTGTIAMLGILGIMIILLAVLG LVVVKALIGSPWGMFTIAATIPIALLMGVYMRYIRPGRVGEASLIGVVLLVLSLIGGKFV AESAALAPLFSFSGETIALMMIAYGFFASVMPVWLLLAPRDYLSTFLKVGTIIGLALGII FVLPDLSMPATTRFIDGTGPVFAGNLFPFLFITIACGSVSGFHALISSGTTPKMLERESH ARPIGYGAMLVESFVAIMALIAACIITPGTYFAINSSAAALGGTDVATAASTITSWGFTI TPEQLTTLSKDIGESTILSRTGGAPTFAIGMAQILSGVIGGKTMMAFWYHFAILFEALFI LTTIDAGTRVGRFLIQDLLGYASKSLGDTRSTVGNLIATALCVAGWGYFLYQGVVDPLGG INSLWALFGIANQMLAGIALVLGTTILFKMGKKAYAWVTLLPTTWLLIVTMSAGWQKLFH EKANIGFLSHAKQFQSALDSGKIVAPAKTAAQMKQIVMNDYIDAALCGFFMIVVLIVFIS AIRVWLKAISNKPLDLYEAPYIPRSGQGRSEATKYV >gi|333605512|gb|AFDH01000084.1| GENE 20 24030 - 24233 171 67 aa, chain + ## HITS:1 COG:PA4605 KEGG:ns NR:ns ## COG: PA4605 COG2879 # Protein_GI_number: 15599801 # Func_class: S Function unknown # Function: Uncharacterized small protein # Organism: Pseudomonas aeruginosa # 1 67 1 67 67 67 44.0 5e-12 MFKRLKLIWSYRNQFIHLMVGVPHYETYVAHMKNAHKDQPVLSRAEFFRQAQDNRYDAKD GKISRCC >gi|333605512|gb|AFDH01000084.1| GENE 21 24348 - 25244 968 298 aa, chain - ## HITS:1 COG:CAC1325 KEGG:ns NR:ns ## COG: CAC1325 COG1284 # Protein_GI_number: 15894605 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Clostridium acetobutylicum # 23 298 11 285 285 338 64.0 6e-93 MSVEKSTFQGEKPGKRTATAAKLLQRIVFISLGAALFSIGLEVFLVPNNIIDGGITGISI MLSHFFHLPLGIFLTLLNLPFLFLGYKQIGKTFAISTLFGVIAMSVGTSLLHPVPAVTID PLLAAVFGGVILGVGIGLVIRSGGSLDGTEIVAILINKKSPFSVGEIVLFINLFILGSAG FVFGWDHAMYSLIAYYIAMKMIDVTIEGLDQSKSVWIISEKYKEIGDALTQRLGRGVTYL HGEGAYTGDDKKVIFTVITRLEEAKLKSIVEEWDENAFIAVGNIHDVKGGQFKKKDIH >gi|333605512|gb|AFDH01000084.1| GENE 22 25565 - 25954 351 129 aa, chain - ## HITS:1 COG:YPO0323 KEGG:ns NR:ns ## COG: YPO0323 COG2315 # Protein_GI_number: 16120660 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Yersinia pestis # 1 118 1 115 119 83 41.0 8e-17 MNTNEVMEYALSKPGAVADRPFDNETDVLRVGGKMFALLPSGAAPGEGSVTLKCPPEEAE LLRMQYPEAVKPGYHMNKRHWNTVRLDGSVDPQEIMDMVDVSYQLVRGSLSKKMQQHILQ YGGAEWNES >gi|333605512|gb|AFDH01000084.1| GENE 23 25951 - 26109 86 52 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKVNGKNTPDKSKGIGLRRTRGVLFLAEKEFRFTKANPVLNKTFIVKGAFLL >gi|333605512|gb|AFDH01000084.1| GENE 24 26177 - 27895 1923 572 aa, chain - ## HITS:1 COG:BS_ptsI KEGG:ns NR:ns ## COG: BS_ptsI COG1080 # Protein_GI_number: 16078455 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) # Organism: Bacillus subtilis # 1 565 1 545 550 760 69.0 0 MANIRGIAASAGIAIARAFRLEHPDLTVVRKTVEDTEAEVAKFEQALEKSSAELEAIKEQ TLREMGEEKAEIFESHLLVLGDPELVDPVKAKIRDEKVNAEFAMNEVAMTFVEMFENMNS DYLKERASDMRDVTKRVLAHLLGVKFVSPSSISEETVVVAEDLTPSDTAQLNRTYVKGFT TNIGGRTSHSAIMARSLEIPAVVGTKNVLDLVKDGDLLIVDGLDGDVLINPEPAVVEEYR AKQQRYAEQRVEWAKLRNEPTVTPDGHHVELAANIGTPADVAGVLENGGEAVGLYRTEFL YMGRDQLPTEEEQYKAYKAVLEKMEGKPVVVRTLDIGGDKELPYLQLPKEMNPFLGFRAI RLCLEREDIFRTQLRALLRASVHGSLRIMFPMIATLDEFRQAKALLLEEKAKLAEEGTPA SDEIQLGIMVEIPSTAVMADQFAKEVDFFSIGTNDLIQYTMAADRMNERVSYLYQPYNPA ILRLVKMVIDAAHREGKWAGMCGEMAGDTTAIPLLLGLGLDEFSMSATSILPARSQIVKL SLSEMRQLAARAIELSTAEEVVALVNGHQPKA >gi|333605512|gb|AFDH01000084.1| GENE 25 27888 - 28160 360 90 aa, chain - ## HITS:1 COG:BS_ptsH KEGG:ns NR:ns ## COG: BS_ptsH COG1925 # Protein_GI_number: 16078454 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, HPr-related proteins # Organism: Bacillus subtilis # 2 87 3 88 88 84 59.0 4e-17 MQKTFKVTSDTGIHARPATALVNTSNKFKADVFAESKGKKVTMKSILGVLSLGLEENDVI TFSAEGEDAAEAIAALEAIMTKEGLGELHG >gi|333605512|gb|AFDH01000084.1| GENE 26 28256 - 30316 2263 686 aa, chain - ## HITS:1 COG:BH0844_1 KEGG:ns NR:ns ## COG: BH0844_1 COG1263 # Protein_GI_number: 15613407 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Bacillus halodurans # 1 426 1 424 424 553 67.0 1e-157 MLKGVFGALQQVGKALMLPVSILPAAGLLLAFGSAMQNPDTIELMPFLSGNGFQVAAHLM SSAGDIIFANLALLFAIGVAIGLAGGDGVAGIAATIGYLIMNVTMGVLAGVTPFSLTLKD PSYASVLGIPTLQTGVFGGIIMGVIAALLYKRYHKIELPSYLGFFAGKRFVPIITSLAAL LTGLILIFIWPPVQHGLSAFSRSVLDANPVLASFLFGVGVRSLIPFGLHHIWNAPFWYEF GEYIDKSGVLVRGDMKIFFAQLKDGVPLTAGTFMSGNFPFMMFGLPAACLAIYHTARPEN KKLIAGIMGSAALTAFLTGITEPIEFSFLFVAPLLYVFHALLAGLSFAIMTLLQVKLGFT FSGGSIDFLLLGVLPNRTPWWLAILVGLVFAVIYYVVFRFAITKFNLRTPGREEVQTEAD TDDAPVSGASNASGTGDLPTSILAALGGAPNISNLDACITRLRVQVKDKGAVDKERLKKL GASGVLEVGNNVQAIFGTRSDSLKNQIQDVMAGRIPSTASVPVVESPDTGGSELMKEETI VAPADGELMDITLVPDEVFSQKMTGDGFAILPKNGTIVSPVNGKIFNVFPSKHAIGIQSD AGKELLVHIGVNTVKLKGQGFEVLVSEGDIVEAGQPIMKVDLDYVKEHAPSIISPIIFTN LPEGTEIRLNKQGDVKSGDKNIITIK >gi|333605512|gb|AFDH01000084.1| GENE 27 30920 - 31321 343 133 aa, chain - ## HITS:1 COG:SMc02347 KEGG:ns NR:ns ## COG: SMc02347 COG1146 # Protein_GI_number: 15966328 # Func_class: C Energy production and conversion # Function: Ferredoxin # Organism: Sinorhizobium meliloti # 1 104 1 104 109 104 47.0 4e-23 MIELVSSTRCVGCSMCVKVCPTNVFDEGPDRVPVIARQDDCQTCFICEVYCPVDALYVSP YGDEAVSVDERELAESGVLGSWREKIGWGPGRVKLAKLDTTPFIDRVLPRQPPLDAEETA FILTPDYPRKPAG >gi|333605512|gb|AFDH01000084.1| GENE 28 31318 - 33015 1380 565 aa, chain - ## HITS:1 COG:SMc02349 KEGG:ns NR:ns ## COG: SMc02349 COG1053 # Protein_GI_number: 15966329 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Sinorhizobium meliloti # 9 517 16 527 547 334 45.0 2e-91 MSQKQPLQLTADVLVIGGGPAGAWAAWSAASRGARVVVADKGFLGSSGATAPGGTNLLYL PPDPALREEAVRKRMKGGGFLSEPSWIHGVLDQVYESLELVESWGYPFRRDENGVPMRDH LQGPEYMKLMRRAVIKAGARILDQSPALELLVDEHGVGGARGVSRLDHRDWEVRAGAVVI ATGGCAFLSKGLGCNVLTGDGLLMAAELGVELSGMEFSRQYAPSAAFGTNTRGRLLNWAT FYAEDGTPLHSEGPRPHDFLPKMLSKGPVYAIMDKADTPEKRAILRSSHAIFFLPLDRAG IDPFTQPFPLTLRYEGTVRGTGGIRLVGEDCSTTVAGLYAAGDAATRERVTGAQSGGGAF NASWAISSGTWSGRAAAGYALALGSRAGQRHLRPAGGAGLAGAPGTSALRDVPGIIGAIQ REVFPLEINYFRSEPVLRESLQRLHGLWPLVQGGIPGGDARERVRAREAAAMVAAARWIH TAGLARRETRGMHTLAEYPHTDPAYQRRLLVSGLDDIRVKFEGGGEVPPLTAVAPAAHSG PPGQRGHEPLQPSGGDAVRKEVTLA >gi|333605512|gb|AFDH01000084.1| GENE 29 33072 - 34088 1280 338 aa, chain - ## HITS:1 COG:AGpT119 KEGG:ns NR:ns ## COG: AGpT119 COG0715 # Protein_GI_number: 16119873 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 74 258 48 236 320 85 32.0 2e-16 MTHTAYTKKYTHLIGFVLLLAALVLLASACGRAEADPSGGADPGGKAPSVLRVGYIGANK LNLPSGAEGWGFYKGGAKEELKKLGITDVQFVGFPNGPDLSESLISGRIDIGSLGDTPAI LARSAGAPSKVITLNSSGSNAFILGKKNGPATLAELKGKKVSVKKGSYMHRYLAGLLKEQ GIKDVQLIHLLDEDADAALVRGEVDAIATTEVRGLKMIPQGFPVLDEAAKDHPALVGAGV TVVSESYLKKVPDIAKVWNDLRIKALDDLKTQEDAYYAFVVENTGTPLDLVKKTSAVSRI QRESFTDSGIQALKATKDFLVQDKLADTDFNVDDWLVK >gi|333605512|gb|AFDH01000084.1| GENE 30 34167 - 35018 1127 283 aa, chain - ## HITS:1 COG:BS_ssuC KEGG:ns NR:ns ## COG: BS_ssuC COG0600 # Protein_GI_number: 16077950 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type nitrate/sulfonate/bicarbonate transport system, permease component # Organism: Bacillus subtilis # 16 283 5 276 276 259 55.0 5e-69 MNGGGEALRRLTGTHEQPGSLRKYGQTLLKAKTGDFALGAVLPVLVLIVWQAAGDLGWIS TFFLPTPLMIGSALKELAVSGELTEHVGISLWRAMTGFLLGGSLGLLFGLLTGYFRKAEQ LLDPTLQMIRLVPHLAAAPLIILWFGFGETSKTLIIANGAFFPLYVHTYLGIRSVDNKLF DVAKVLRFSPYKQLLRLIIPASLPNILLGLRLSLAVSWLGLVVAELIGSQSGIGFLINFA KQNSATEIIFVGVILFAVVGKLVDTFVRLLEAKLLQWRDSFEG >gi|333605512|gb|AFDH01000084.1| GENE 31 35034 - 35906 823 290 aa, chain - ## HITS:1 COG:BS_ssuC KEGG:ns NR:ns ## COG: BS_ssuC COG0600 # Protein_GI_number: 16077950 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type nitrate/sulfonate/bicarbonate transport system, permease component # Organism: Bacillus subtilis # 17 289 4 276 276 273 57.0 4e-73 MSKPSNLLQGTGSTLLAASPESVPADPAPTGSSKRRRRLESFLLGAIVPAAALILWQVLG DAGYISRLLFPTPWTIAKSLRSLLESGALAENVGISMLRAAAGFALGGGFGLLLGMLVGF FRRTEKVLDPSVQMIRMIPHLAIAPLFILWFGFGEPSKVLLIAKGAFFPLYINTFLGIRG ADKKLFEVTRVLGFSTYQQLVRLIVPSALPNIFLGIRVSLGIAWLGLVVAELMGASSGLG YLMSEARQFNKTAVVYVGIILFAVIGKAADSGVRLLERRLLQWQDSYGGK >gi|333605512|gb|AFDH01000084.1| GENE 32 35925 - 36701 781 258 aa, chain - ## HITS:1 COG:BS_ssuB KEGG:ns NR:ns ## COG: BS_ssuB COG1116 # Protein_GI_number: 16077948 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component # Organism: Bacillus subtilis # 13 258 29 274 274 325 62.0 7e-89 MGNLLLEVGRLNKAFETKKGLVHALHDINLDIKEGEFITVIGPSGCGKSTLLKIVAGLDT DHNGNVRLGGEEVTGPGIDKGFIFQEPRLFPWLTVEKNIAADLSLKDPEVRAKVDNLIEL VKLQGFEKSYPRELSGGMAQRVSIARALLRNPKILLLDEPFGALDAFTRAHMQEVLLDIW QANRTTMVFVTHDIDEAIFLANRVVILKPRPGAIRNIVPVDLPFPRKKTSTSFQEIRYKI LNEFEKLDELELVESAGI >gi|333605512|gb|AFDH01000084.1| GENE 33 37006 - 37908 1022 300 aa, chain - ## HITS:1 COG:BS_glcT KEGG:ns NR:ns ## COG: BS_glcT COG3711 # Protein_GI_number: 16078452 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Bacillus subtilis # 8 286 7 285 285 298 53.0 9e-81 MHGRGAEVKNSSIEVVKVLNNNVIIAAHPVYREVVVIGKGIGFNRKAKDLIPSEAVEKLF ILTNEKEKEQYQQLIPQIDEKLIEVMNEVILYISEHAGAPLNEHIHIALTDHIAFAIKRL EQGIVLQNPFLLETRELYPQEYAIADYVIRTINDKMNVHLPPAEVGFVTLHIHGAITNRP VSEVNEYSRLIGELISLIERQMHITIDRRTIAYSRLLRHLRFAIERVKRKESVHEPDKLG ELLKQQYPEIYTIAWTLMKVMQRRLRQPVYEAEAVYLTMHLIRLMQKDDSLEKEKPAGDS >gi|333605512|gb|AFDH01000084.1| GENE 34 37997 - 39133 896 378 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_1609 NR:ns ## KEGG: GYMC10_1609 # Name: not_defined # Def: polysaccharide deacetylase # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 163 353 247 437 460 162 40.0 2e-38 MKDGAVILLHDSGDTLGANPDAPGYMIEALADVLEDARRRGICFARIDEHLPGRKLPERL VRRGAEKRTALPAASSPGAQASQAAGDAATSAQAAGEAAAAHGSAAGEAAATVQDPQAAD EAAAMHSSRAESAQLPQPVMEAAPTLEAPQSQPPPPPEKHRGLALRAWMLWERLFHRLYR VQPGDPEHRFLHYRIRTYHGQELILEDGEIIRPGDKVAELHLDNEWLRRAGSQSSSMMKL AVQMIRAMGHSMPRLAHRLLTDPALADLKGVYGISMIHRGTRQFGFTVLPLHNRLWRWSS TLYLRVLLGMLHPGGFGRLQENTARLNPRIIAMSVSQMKKRYAPGLNAAEPSSGAYYPEE AYGAVLQELPEGVAGKGG >gi|333605512|gb|AFDH01000084.1| GENE 35 38991 - 39674 221 227 aa, chain - ## HITS:1 COG:BH1917 KEGG:ns NR:ns ## COG: BH1917 COG0726 # Protein_GI_number: 15614480 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted xylanase/chitin deacetylase # Organism: Bacillus halodurans # 42 167 83 211 276 106 39.0 4e-23 MVEGMIWMVFIFYLVYTLVPTFLIRRLGYGVFKSRTESPCAALTFDDGPDPQYTPQLLDL LARKGTRATFFVLGAKAEHYPDLIRRMHEEGHLVGLHNYMHHSNALMTPWKVRRTLEHSA DVIERITGIRPVHYRPPWGVFNVFDFLLIRKFRIVLWSMAAFDWRSRGGTDKIKRKLIGK SERRRRHSPARQRRHTGREPRRAGLYDRGTRGCAGGCPPAGHLFCAY >gi|333605512|gb|AFDH01000084.1| GENE 36 39667 - 40881 1259 404 aa, chain - ## HITS:1 COG:SA0874 KEGG:ns NR:ns ## COG: SA0874 COG0477 # Protein_GI_number: 15926604 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Staphylococcus aureus N315 # 19 354 21 357 396 157 29.0 4e-38 MDENKQRRLSARLIGYAFILFVVEFVRGAYLLSYLPVYAANVLHYPVTVVGLAISIHYVV DMIVKGLAGLLLDRFPARVIVGGGMFFSLIGLILLQGPHNVFIFLLSAALFGVGISPIWL VCLSRITAEQRAFQMGVLYTVWLTGLGAGPVVINFVLDYSLSVTYFILLGLWGLGCLLSM GMGGRAEGTRRKTVTWKVQAGVLKKQLGAAKPLLPPMMLQTLAAGLLVPVLPGFASGVMG LQYAQYSMVLLAGGLCTVICLMPMGKLSDRFGLRGFLILGFAFLAAALYVMTFIKELEFA LLTAALLGISYACVLPAWNALMALYVPKGHQEMGWGTLSSVEGLGAFIGPVLGGWLADRY SEVFVISASAVLLGAIALWYILVPLQPSVKTDGKAAVKGVTYRG >gi|333605512|gb|AFDH01000084.1| GENE 37 40887 - 42029 969 380 aa, chain - ## HITS:1 COG:BS_ypfP KEGG:ns NR:ns ## COG: BS_ypfP COG0707 # Protein_GI_number: 16079251 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase # Organism: Bacillus subtilis # 1 367 1 368 382 240 35.0 4e-63 MNPDAKILILYASYGDGHLQVSRALRQSFETQGVSNVELVDLFAQAHPWFNSFTRFVYLK TSSIGLYGLSYYLTQDMRADALLSRWLHSLGDRKLRQMIREHQPAAVVNTFPLKGMPDTG PHCGETIPTFSIVTDYDLHSRWIHPDVQHYFVPSEELKTLLVAKGVPADNIKVSGIPLRP SFQTAGDGNAALTSGEAEQAAPFVLMMAGAYGVLRGLRGLCAKLLRDVPDVRIVLVCGRN ERLKRYFETAFAGQERVCVHGFVEDIHRLMAASACMITKAGGVTLSEALALDVPVIVYRP FLGQEKENADYFVKKGAALAAFNPDELVRQVGRVMRGEWPPESARTSARNLHKKNAGQTI VSHILEEIGHHPARSSEQAR >gi|333605512|gb|AFDH01000084.1| GENE 38 42100 - 43269 1168 389 aa, chain - ## HITS:1 COG:CAC2897 KEGG:ns NR:ns ## COG: CAC2897 COG0707 # Protein_GI_number: 15896150 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase # Organism: Clostridium acetobutylicum # 7 373 2 366 384 221 29.0 2e-57 MKKNGHKVLILSGSYGDGHKQAAEAIRREIAQRYPGAETVLLDFMEWTHPFMNSIGRYMF LKGLQTFPSAYGYVYNKTREANFFSYILKQFNRFGLGRMMKLLREVEPTVVVSTFPPAAG AMSAVRAYGLYDVPTATVITDHTDHSYWVYPETDKYLVGSDTVRDGLIQAGVPAGRIEVT GIPIRPEFQGTYESAQTRRLLGLDPELPTILFMGGGCGMMGGELANRLEAFEALPVRTQL VVVCGNNEKLRAQITELAAHSRHRILATGYVNNVHEWMAAADILVTKPGGLTISEAMAMK LPIVIYKSLPGQEEDNARFLLQAGIAVKAKNMNDLIGQLGILLRSPSLLYTMRENLGRTR RSNASAEAVRIVLETRSERRYAAALQEIW >gi|333605512|gb|AFDH01000084.1| GENE 39 43563 - 44420 604 285 aa, chain - ## HITS:1 COG:BS_ywdF KEGG:ns NR:ns ## COG: BS_ywdF COG0463 # Protein_GI_number: 16080849 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Bacillus subtilis # 15 278 3 265 268 289 54.0 5e-78 MRESQSPQIPKEPLISAIVPTYNRPYVLGELLETLAAQNYPNLEVLVVNDAGVSVDFVKE AYPELAVTVINQPVNLKHVHARNEALRIARGELILLCDDDDLLTPGHIRRMLAALEETGA DFAYSDVELFDYRVEGRTRIPVSRRLFAYEFDLAEMRKFSTYVPSGTLYRRAIHDTLGEY DPDVHHYWDWDFFLRAAASYKIVRVPVASVLYAFSLKGDNVSGNRQEGNPYLGRLCAKHG LGELPSENFFTLLDKPHMRQREAPSTIIWDGEPVISRLSEQTESV >gi|333605512|gb|AFDH01000084.1| GENE 40 44757 - 45455 679 232 aa, chain + ## HITS:1 COG:TM1655 KEGG:ns NR:ns ## COG: TM1655 COG0745 # Protein_GI_number: 15644403 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Thermotoga maritima # 1 227 9 240 247 216 48.0 3e-56 MQASKILVVDDDHHILEIVSLYLRREGFEVITADHGDHVLQLVTEQRPDLILLDILLPGM DGIELCRQLRKTSDIPVIFLSAKSEDIDIILGLSIGGDDYVTKPFSPAQLVARVKALLRR CSSSRNPAEQHVLKFPDLEIDLHSHIVKVQERPIALSAKEFDLLSLLAQNPNRVYRIEQL FEQVWSLESFGDPRTLIVHISNLRKKIEPNPSDPRYIITVRGVGYKFNGSPV >gi|333605512|gb|AFDH01000084.1| GENE 41 45569 - 47419 1507 616 aa, chain - ## HITS:1 COG:BS_ykrQ_3 KEGG:ns NR:ns ## COG: BS_ykrQ_3 COG0642 # Protein_GI_number: 16078417 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Bacillus subtilis # 393 611 27 247 258 205 46.0 2e-52 MTKFIQAIALGLVFTALFLFIGVKDVRAETSPPMRVNAPPVLLDNWEYCWAEEEGAGRTE GPPHSSGDWKTAGRLLNPQDRMGRSHLWLRVPLPSHTATDPSLLIRAFDNVEVYTEQGLA YRFGDWQEGRKYRYYGTPRRIVPLPENSQGMLYVHLQSESRNIGIEDGAMYGSESGFIKR MVRQEFFRAVLGVSYILAGIVAFCVSLGLRSHKVFLDFSLFSFCFGIYSICRSSVVYLVF DHPAILTYAELIALFGGVIGILMFVEHLLGSGRGAYIRRAWQLHLAYSAGVLLLHACRVV SVVEIVDWYQLLLVLSMPLVIVRAAVCAMKGNRGAKLLLVGIGVICLTGLIDIFQNRLNI MIRFSPMTYLGVSVFILLLIVLLFRQFADIMLQLKRSEKLSLVGQMAAGMAHELRNPLTI ISGFLQLSRKQAPDAPYLGMMSSEVNRMNEIIDDFLLLSKPVNSRFDRHEVLPLLRETLQ LFDNQRKEAGVSAILEEEGAIPKIDCDPNQLKQVFINMVKNAIEAMPEGGLLHITVSALP KNKVGIRFADQGKGIEPGHLTRIGEPFFTTKENGTGLGLMVSNKIIENHAGILRVSSRLG LGTTIDIILPVHIKTA >gi|333605512|gb|AFDH01000084.1| GENE 42 47654 - 47893 354 79 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|167465632|ref|ZP_02330721.1| ## NR: gi|167465632|ref|ZP_02330721.1| hypothetical protein Plarl_24238 [Paenibacillus larvae subsp. larvae BRL-230010] # 1 79 1 79 79 110 73.0 5e-23 MSKDKTMDPMSHETVETDGIYADEAGREVTLKRGDKFPADLVLGETTWEMKGFSLNEAEI DHQQKENTPPRQHVKTGDR >gi|333605512|gb|AFDH01000084.1| GENE 43 48251 - 48910 653 219 aa, chain + ## HITS:1 COG:BS_yloS KEGG:ns NR:ns ## COG: BS_yloS COG1564 # Protein_GI_number: 16078643 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine pyrophosphokinase # Organism: Bacillus subtilis # 19 219 21 214 214 125 35.0 5e-29 MTLTQQRIFIVTGGAFGPWADEHLNTLNPGTDLLVGADRGALHLVRSGYRPRLSLGDFDS VTPEELAEIRRGSEELVACDPVDKNWTDTELAYTWALDRNPSEIILLGALGTRLDHTLAN IHLLRKGAEAGIRSRIIDDHNDIELVRDRIAITAGPYAQVSLLPLTTEVTGITLTGFQYP LENATLQIGQSLGISNVLQAGQGSISIRSGLLLVIRSRD >gi|333605512|gb|AFDH01000084.1| GENE 44 49234 - 49764 602 176 aa, chain - ## HITS:1 COG:no KEGG:BcerKBAB4_2443 NR:ns ## KEGG: BcerKBAB4_2443 # Name: not_defined # Def: metal-dependent hydrolase # Organism: B.weihenstephanensis # Pathway: not_defined # 3 175 2 173 173 214 60.0 1e-54 MGEDLRYPIGTYTYEGEISPEQIQDWLEELAAAPSQLRRAVSGLTEEQLDAPYRPGGWTV RQVIHHVADSHMNSYVRFKLGATENEPVIKPYEEQLWAELEDGKTAPPEISLVLLDALHD RWVRWLRTLDEAGWARTFLHPANGPTTLARGLGLYVWHGKHHTAHITSLRERMNWH >gi|333605512|gb|AFDH01000084.1| GENE 45 50194 - 50895 767 233 aa, chain + ## HITS:1 COG:BS_xpt KEGG:ns NR:ns ## COG: BS_xpt COG0503 # Protein_GI_number: 16079265 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Bacillus subtilis # 31 219 1 189 194 242 68.0 4e-64 MNTALWGTVQIRVFLRFSFQLIISFMGDASMELLKRKIEDEGTVLSGQVLKVDAFLNHQI DPVLMFEIGKEFSRLFAGEGVTKVLTLESSGIAPSVMAALEMKVPVVFARKQKSLTLTDN LYVERVYSFTKQQTNEVTVSKKFLSADDRVLIIDDFLANGEAALGLANIVKAAGAEVAGI GIVIEKSFQPGADKLKAAGYRVESLARVASLDNGKVTFLNSSVSEEDTHVQLV >gi|333605512|gb|AFDH01000084.1| GENE 46 50879 - 52213 445 444 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 6 414 15 417 447 176 30 4e-43 MFNWFKTGSLGLQHVLAMYAGAVIVPIIVAGQLHLPPEQLSYLISIDLLTCGIATLLQVW GNRLFGIKLPVMLGCAFQAVAPMIAIGGQHGMTAIYGSIIASGLIIFVFGGLLGKLARFF PPVVTGSVVTIIGLTLIPVAIQDMGGGQNRADFGSLQNLALSFGVLLFILIMNRFFGGFI RAVSILLGLIFGTIAAAFMGKVSFQGVLDASWFHMVQPFYFGVPTFHLTSILTMTLVAIV SVMESTGVFMALSKICDKDLTDRDLARGYRAEGLASIIGGLFNSFPYTTYSQNVGLVQLT KVKKRSVIAAAGVILILLGSVPKIAALTMLIPTAVLGGATIAMFGMVVSSGIKLLSSVDL NQHENLLIVACSVGMGLGVTVAPTLFSHLPESVQILTGNGIVAGSFTAIVLNLVFSIGKS RSKAQAAHSTPDQEKHEFSLKASN >gi|333605512|gb|AFDH01000084.1| GENE 47 52561 - 54144 1590 527 aa, chain + ## HITS:1 COG:no KEGG:BBR47_15000 NR:ns ## KEGG: BBR47_15000 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 11 287 3 285 286 153 37.0 2e-35 MKTKLLSLKIILAILLILPLFPAGPARAGLTSTPFPDVDSAKYSWAVQSITFMAQSGILQ GYPDGTFKPGRYVNKEEWAVMVYRLFDKYRPSLRSDALNYSRPSYVDVPSSHWAYREISD TFVAVGDMTVTARNGKSLFNPEYAFTRWDLAMMLYGLYGIDGGPESTNVCGDMNRFKDIT TRLFNTENELESFRSKDNRYNSELPPGGIYPILFLKEADGTCGANYDDYSALAAGALIEM NKTGILTADAAGKFYPSAKLTRAEAVTVLHRILDHLKTRGVLGNYSSINPTGILRPVPMP APKPGEAAEGPGSFDRDLQRDGEFNTIVYPNGKKYMRLELTSKDAADLYLYMNGDIAFLR QEELPRYVQVDRVSQIGIKSQSRNPEKRSPLAAYPATLKVTFHDEIPSTGTGTGTGKPGK DNGGQTGGVTAPPGAAAVQDLKSQGEINQTFAPNGSKYLNVNLISQDKVDLYVQLGTGTA FLKQEELPAKINVQGMSSVTVRTQSRNPEKRTSQQTYNAYLYVTFSN >gi|333605512|gb|AFDH01000084.1| GENE 48 54394 - 54849 513 151 aa, chain - ## HITS:1 COG:BS_ykmA KEGG:ns NR:ns ## COG: BS_ykmA COG1846 # Protein_GI_number: 16078380 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 8 139 9 136 147 137 55.0 7e-33 MNSPSKPRLENQLCFALYACSREITRMYHPMLEELGLTYPQYLVMLVLWEKDESTVKELG ERLFLDSGTLTPMLKRMEASGLLKRTRSSRDERSVVITLTDKGHALEQPSTCIPAQLMTR AGGTEEQAGELLEQVKQLLAAVNHANRNSGE >gi|333605512|gb|AFDH01000084.1| GENE 49 54872 - 55351 619 159 aa, chain - ## HITS:1 COG:BH2830 KEGG:ns NR:ns ## COG: BH2830 COG0386 # Protein_GI_number: 15615393 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutathione peroxidase # Organism: Bacillus halodurans # 1 157 1 157 157 218 63.0 5e-57 MGVYEFTAQRINGEEQSLEDYKGKVLLIVNTASKCGFTPQYQGLQELYDAYKDQGLVVLG FPSNQFMEQEPGTDEEIEQFCQVNYGVTFPMYSKIDVKGSGAHPLFHYLTRHTAGILSKE VKWNFSKFLVNRSGDVVSRYAPTTAPSKISGDIEKLLAE >gi|333605512|gb|AFDH01000084.1| GENE 50 55604 - 56341 866 245 aa, chain - ## HITS:1 COG:L70624 KEGG:ns NR:ns ## COG: L70624 COG0528 # Protein_GI_number: 15673992 # Func_class: F Nucleotide transport and metabolism # Function: Uridylate kinase # Organism: Lactococcus lactis # 1 235 4 237 238 223 48.0 2e-58 MKYRRVLIKLSGGAVAGSGDFGFDPERLEHIAREILSVLELGVEVSLVIGGGNIFRGNMG ENWGIERAEADNIGTLATVINSLMLRGVLKARTNAEVRVMTAIPVTSVAEPYIRLRAIHH LEKGYIVIFAGGNGQPFVTTDYPSVQRAIEVNCDAILVAKQGVDGVYDKDPNVYGDARMY ESLHYNDVLQNDLRVMDQSAFILARDYGMPIHVFNFDKPGSMKKIVSGIHSGTTIHEAAK LTFSV >gi|333605512|gb|AFDH01000084.1| GENE 51 56551 - 57054 401 167 aa, chain - ## HITS:1 COG:RSc2318 KEGG:ns NR:ns ## COG: RSc2318 COG1522 # Protein_GI_number: 17547037 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Ralstonia solanacearum # 20 152 7 141 151 105 40.0 4e-23 MTLKAFERPHFKKERTGEKELDQTDRSILALLQENGRMSMTELGKQVGLTSPAAAERVRR LEDKGVLTGYRAVVSPEAVGKAVIAYILMETEHCRRYVEFVRQVPEVAECHRIAGPYSYL TKLVTSSVRELETFIDASMEFGKPSTLVVLSSPLAQAPILPVKESVL >gi|333605512|gb|AFDH01000084.1| GENE 52 57147 - 57707 593 186 aa, chain + ## HITS:1 COG:BS_yrdC KEGG:ns NR:ns ## COG: BS_yrdC COG1335 # Protein_GI_number: 16079729 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Amidases related to nicotinamidase # Organism: Bacillus subtilis # 3 182 1 180 187 174 49.0 8e-44 MQLNDKAVLLVIDVQKAFDDPRWGRRNNPEAESNIALLLEAWRETGRPVIHVQHIGVTPQ SLFRAGSAAVEPKPEALPLPYEAVIRKSVNSAFIGTDLEARLRVLGCTEVVVTGLTTNHC VETTTRMSGNLGFRTILAADAAATFDRTGPDGRVHAAEDIHAMTLANLHGEFAEIADTRT LLEAVK >gi|333605512|gb|AFDH01000084.1| GENE 53 57917 - 58384 382 155 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_2519 NR:ns ## KEGG: GYMC10_2519 # Name: not_defined # Def: YncE # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 155 1 154 154 136 44.0 3e-31 MKRGISFLLPDPYGTPLADLLSPVELTAYNWLVDGVESYVLEEDGLGPPLFQNPDEMTDG GRFKERIGTGRHYLIFVDIKAFPAGSTVQEVTNYEQFKACSCELALIIVDSVYAALYCKD QELLARLETNAVERGYENVVSITDDNDFRTRLAVF >gi|333605512|gb|AFDH01000084.1| GENE 54 58516 - 59712 1368 398 aa, chain - ## HITS:1 COG:DR1307 KEGG:ns NR:ns ## COG: DR1307 COG0477 # Protein_GI_number: 15806325 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Deinococcus radiodurans # 17 357 68 409 458 91 25.0 3e-18 MPEDKNNMTLPGFARKIIAATVFINMGRFSVFTFLAVYLTHTLQFPAWQSGTVLTVALLI NQAVPLFSGMIGDRIGYSTMLVAGTFLAALGYLGIYALDSFGGLVLAACFIGIGPAMYEP SIKSLFGNLPHVLRRRAFTYFNQALNAGAVLGAVTGGIFVSFHTSYPMLFGSVLFLLVSV LLLTQAKSFPKGRHSAKMLDSYKKVLRNRPFLAFSGAMVMFWIMFTQLSVSLPLEVYRLS ENGRLVSSVVFFNGLYAVLFMFLLRGVFQRNSAAVIVKYGMLIIGLGLLAVPWVPSVLWV LLCVLLFTSGETLVLPGVDIAIAEYSMNEDTGAFYGAFGLSYAVGGTIGNYLGTWLIGEY GGTVWPWIIYGLIGLCGFISLQALQAMGGKTAKTVHTA >gi|333605512|gb|AFDH01000084.1| GENE 55 60179 - 61405 977 408 aa, chain + ## HITS:1 COG:MT2655 KEGG:ns NR:ns ## COG: MT2655 COG1533 # Protein_GI_number: 15842117 # Func_class: L Replication, recombination and repair # Function: DNA repair photolyase # Organism: Mycobacterium tuberculosis CDC1551 # 4 284 40 317 340 165 35.0 2e-40 MNPVRYEKITAKQVLNPVKTPAMPFEHSINPYRGCQHGCSFCYARAMHAFLGLNGDDTFQ TNILMKENAPEALREQLRKAARSRKGLAGIGRVAIGTATDPYQQAEGRAKLTRGCLEALT EYPVPLTITTRSPLILRDLDLLRKLPVYAVNISLNTLNRTTWRNFEPGAPSPAKRLETVR ALTDAGIPTGIFMAPMLPYITDGRDELEELIAAAAEHGAQFVMASYLRLSASDVKVWFFE TIRRHYPQLVGKYAGLYAASAYAPREYRDPVRRYVDELLERHGLRDMDEEEEAPRPGKRA AAGAAASGRSSGKPLEIAWEPPADSPGGACGGCAEAGAGAAGDGGFTGPAGDSAGRREFA DGSGTARRGAGTPGAAQAGATATGTAAEAETLLPLAPDSPPAQLVFSF >gi|333605512|gb|AFDH01000084.1| GENE 56 61548 - 62210 740 220 aa, chain + ## HITS:1 COG:CAC0446 KEGG:ns NR:ns ## COG: CAC0446 COG0494 # Protein_GI_number: 15893737 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Clostridium acetobutylicum # 1 217 1 202 206 152 38.0 5e-37 MTPEMFDIYDEDANRIGTASREEVHTAGYWHQTFHCWLVRPEGNRRMVLFQLRSSSKDTF PDRFDITAAGHLTSGETIQGASRELQEELGLCVPFERLSLLFTVRTDERGTVRGRTFIDR EISHVFGYASDWPLDAYTLQEEEVSGLYEAELHELAALFEGTIDFLEVRGVLAQHENGRT DSSSSRSALTPESVRTVAKKDFVPHPDDYYLRVFELLGKI >gi|333605512|gb|AFDH01000084.1| GENE 57 62283 - 63182 223 299 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 56 293 4 238 242 90 30 2e-17 MYPIYPYIGKETKCEEQPIPFPAQHQPRQPGIESEMIPRPIAENPYYTGSSKLLDRVALI TGGDSGIGRATAISFAKEGAAVAIVFLYEWSDAEETRARIEQLGGRCLLIQADLRAKAAS CEVVARTLSAFGRLDILVNNHGVQFPQQSILDISEEQLYDTYRTNIFPFFFMTQAALPHL CCGSSIINTASITAYRGQKDLIDYSSTKGAIVSFTRSLALSLVDDGIRVNAVAPGPIWTP LIPSSFSADEVRTFGTEVPMKRAGQPFELAPAYVYLASDDSSYVTGQTIHVNGGGMITS >gi|333605512|gb|AFDH01000084.1| GENE 58 63328 - 64800 1889 490 aa, chain + ## HITS:1 COG:VC0433 KEGG:ns NR:ns ## COG: VC0433 COG0531 # Protein_GI_number: 15640460 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Vibrio cholerae # 6 460 3 440 468 300 41.0 5e-81 MSNEPRKLGLLPLISLVVGSMIGGGIFSMPADMAQDAGSGAALIGWALTGIGVIMLALTF QSLANRLPSLDNGIVRYAETGFGRFVGFISAWGYWLANMITIVASSVLLFGSLDYFIPVF DGGNNVLAIVCASLLVWLLHSLQLSGIREATLVHIVTTMAKLIPILVFIAALATVFHSPT FIADLWKAATATAGSPIGLSDIGSQVKQAMFITVWAFLGVEGAVVLSGRAKRKSDVGRAT VIGLIGTLVLYMLVSLLSYGAMSRAALASLPTPSAAYVLEAAVGKWGAVLINAGLIVSLL GLLLGMSLLSAETLYVAGKQKLMPAWLSGENKNGAPKGALWMTTGAVQLFLILVVTASST YHALYLVATTAALMPYLLSSLFLVKTAIGGKAYAPQDSTGESPLWDGPRKRELAYGAAAT LYSLFLLYAAGLTNLLYVCMLYTLGLAFYSFSGREKGIRAMYEPAEAFAAAAIVVLGLYS AIQFISGNAG >gi|333605512|gb|AFDH01000084.1| GENE 59 65076 - 67079 2032 667 aa, chain - ## HITS:1 COG:BS_mcpA KEGG:ns NR:ns ## COG: BS_mcpA COG0840 # Protein_GI_number: 16080176 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Methyl-accepting chemotaxis protein # Organism: Bacillus subtilis # 137 667 142 661 661 244 32.0 6e-64 MKPGLTLHFRDLSLRIKISLLLLVITSVPLIAATLILMSNSNGYISKQTEENMRIRAEMG AGDIDLWMGQKINAVEGLVKAHPEFATASSEKEVLPYLKYLQDSDPEMFFFAYIDRKDVS HDTKGGVTDVSAFQNIKNAKSSKKLAVTDILKDVGSKEDIIIIDQPILDKTGEYAGVIQA IVSPKQIVSLVSRIHFGEKGYAFLLSGNRNILLHPDAADIGKPAKDIAPLLDSKLEASSD KTGYLYADDGTVGEAAVAYSEVQKTGWKLFISAPKTEVYSTVSKAKTLAGIIIAVSVLLV ILISILASRTILRPLMNISGMMRKAAAGDLTGRLDVKGKDEMGLLNADINGMMDSFSSIL DRMKNAIDHMASSSEELTAISAESAGVASRTSQTANSTAVGAETQHDAAQQTAQAMEEMA IGIQKIAASSTQVAETTDSVRSEVNRGSETVQQTLNQMKVVGSNVRDSAGTIYSLQEKSA EIQKIASTISDIARQTNLLALNASIEAARAGEHGRGFAVVAGEVKKLAEQTSHSTVEIQE ILDEIVAATGKSTQSIESSLEEVAQGEDLMNAMEQSFRSIQTAILDVSAQIEEVSAATQE ISAGTEEVSASSQEMVDISKQTLNQMRQVAQSMNGQLHSMNDISSSAESLSSMAEEMQKL ASAFTIK >gi|333605512|gb|AFDH01000084.1| GENE 60 67283 - 67609 474 108 aa, chain - ## HITS:1 COG:BS_ebrB KEGG:ns NR:ns ## COG: BS_ebrB COG2076 # Protein_GI_number: 16078792 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane transporters of cations and cationic drugs # Organism: Bacillus subtilis # 2 108 3 108 117 93 55.0 9e-20 MGYVYLAIAILGEIFATSLLKSSEGFTKWLPSAGVILGYGTAFYCLSLALKTLPLGLSYA IWSGVGTAFTAILGFLVWREKLSAAGVIGIILIIAGVALLNLTNKGHA >gi|333605512|gb|AFDH01000084.1| GENE 61 67750 - 68745 861 331 aa, chain - ## HITS:1 COG:no KEGG:BCB4264_A3236 NR:ns ## KEGG: BCB4264_A3236 # Name: not_defined # Def: hypothetical protein # Organism: B.cereus_B4264 # Pathway: not_defined # 8 318 7 324 410 207 37.0 6e-52 MKNKAGLTLLLSASLLVLSTVPAGAIQERADKPVLTFPVISDVHVDAAKQDSQRKFTEAL EDLNRVNPGADALVINGDLTGGSARDYTRLKELMKSTPHPQKTFATIGNHEFYSAWLNAK GNWSPNSFPNKETEAASIGRFLSFTGEKKVYYEEEIKGYPFIFLGSEQYRQTNPGNMEDA YLSEEQLNWLEQSLARHGQESGKPIFVFLHQPLPGTVAGTSVASNKRPVVQHEELRSILS KYPQVIFFSGHTHWELRQPNTLVRDKFTMVNSSSVERPWTSDGQGGEKLKDAKESEGLYV EVYEDRVSIQGRDFYAKKWIPEAQFKIPVRK >gi|333605512|gb|AFDH01000084.1| GENE 62 69629 - 69829 187 66 aa, chain + ## HITS:1 COG:lin2124 KEGG:ns NR:ns ## COG: lin2124 COG1278 # Protein_GI_number: 16801190 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Listeria innocua # 1 66 1 66 66 95 78.0 3e-20 METGTVKWFNAEKGFGFIEVEGGKDVFVHFSAIQGDGFKSLDEGQRVQFDIAQGNRGPQA ENVVKL >gi|333605512|gb|AFDH01000084.1| GENE 63 69958 - 70164 87 68 aa, chain + ## HITS:1 COG:no KEGG:BBR47_50790 NR:ns ## KEGG: BBR47_50790 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 1 64 1 64 68 81 56.0 1e-14 MHYSKKNMEPVPEEEITVWACSQESCVCWMRENFSFNQVPLCPICKSEMVKQVKMLPVLT NHNHNALG >gi|333605512|gb|AFDH01000084.1| GENE 64 70291 - 71484 1116 397 aa, chain - ## HITS:1 COG:BS_yjiB KEGG:ns NR:ns ## COG: BS_yjiB COG2124 # Protein_GI_number: 16078286 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Cytochrome P450 # Organism: Bacillus subtilis # 12 386 25 392 396 337 46.0 3e-92 MSTLFSPDFLRNPYPLYAQLRQNQPVMFMEPLGIWSVFDYEHVKQVLFDHAQFSSEHRPK FEEGTEQESREGGFSLITMDPPRHTQLRTLVSKAFTPKAVAALESRIAAITHELLDEVSE TGGIDLIRDFSYPLPVIVIAEMLGIPSEDREQFKHWSDEVVASADSVVGATNSESQQAHE EMNAYFRKIIALRREEPRDDLISALLAAEESNTHLSEGDILSFCALLLVAGNETTTNLIG NAVLSLLENPDQLAKLRAQPELLPSAIEEALRFRSPLQAMFRTAARDVEIGGQVIPAGSR VVAWMGSANRDPGKFADADKFDIARESNPHIAFGHGMHFCLGAPLARLEARVALQAILER LPDLARADQDPLTPARGFIVHGVSSLPLTFTPTKRLR >gi|333605512|gb|AFDH01000084.1| GENE 65 71600 - 72541 852 313 aa, chain - ## HITS:1 COG:SSO2493 KEGG:ns NR:ns ## COG: SSO2493 COG0657 # Protein_GI_number: 15899234 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Sulfolobus solfataricus # 1 308 1 301 305 242 41.0 8e-64 MPVEPRIAMMLKQMNSHPLPSLEDLKPEDLRKGTGNAAFTFGVEEVKRVEDRKLPLKGRD ISVRIYTPEGQGPWPAFVFFHGGGFVVGDLESHDSICRNLANSVHARVISVDYRLAPENK FPAAVDDAYDALHWIASHPDEFGIDPARIAVGGDSAGGTLAAVSCIKSKEAGGPEIVYQL LCYPAAGFLEEDPASLRENKEGYLLTAEMMEWFSKQYLNTEEEIRNPYAYPIHYKDFSGL PPAMIVTAQYDPLRDSGKAYADKLIGAGVEVVYKNYETLIHGFANFHKFVPAAQEALDEM ASQLRLALGTDKR >gi|333605512|gb|AFDH01000084.1| GENE 66 72933 - 73484 568 183 aa, chain - ## HITS:1 COG:AGl2973 KEGG:ns NR:ns ## COG: AGl2973 COG2094 # Protein_GI_number: 15891599 # Func_class: L Replication, recombination and repair # Function: 3-methyladenine DNA glycosylase # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 4 183 20 187 201 135 48.0 4e-32 MDASFLERDTVTVAKELLGCELVRQTEAGLIRVAITETEAYRGSDDPASHASRAVTPRNR LMFGEVGRLYVYLIYGMHLCINVVAHEPGGVGAVLLRAARPLEGLELIRGNRGDAPDRNL LNGPGKLAQGLGITRDLNGCDLLAEPPQGLALERGAPPAGPILVTPRIGITKAVDYPWRF VAE >gi|333605512|gb|AFDH01000084.1| GENE 67 73499 - 73975 605 158 aa, chain - ## HITS:1 COG:no KEGG:DSY4341 NR:ns ## KEGG: DSY4341 # Name: not_defined # Def: hypothetical protein # Organism: D.hafniense # Pathway: not_defined # 4 156 11 176 178 131 41.0 1e-29 MKAGWAALLILLVLTACQDGREVQVPREHSLAKSYLEDKGYRILTYEGEVQSYELTKDVL SQLPGMMYWGLQTVDPEQYLGKTIRVRKFVVKGHPLSKGKVDVYVYETEGKPFGGTSFPQ DQYGVDGGGWSLDGKTLEEVHSVSYPDWSTAWREKYGN >gi|333605512|gb|AFDH01000084.1| GENE 68 74153 - 74539 84 128 aa, chain + ## HITS:1 COG:no KEGG:GC56T3_1757 NR:ns ## KEGG: GC56T3_1757 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_C56-T3 # Pathway: not_defined # 19 104 38 123 127 93 50.0 3e-18 MRLKRKKRIRKTKHSGSLRILQAKTAVFVTFSDGIRRIYRNRDQDPSYGRVRIPDPRTVS YMNLFVNAVLQPSSVYRVSRGKLRLRSPELPEKGVPIMLQFVTILGKHSRGCRGRKTATT CRSPHKVR >gi|333605512|gb|AFDH01000084.1| GENE 69 74562 - 74990 426 142 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MPPSLIKLFVAASSVITGTVTTTTTTAVNDSVRRFDAVVTAPMIDAGAGTTTIADTSFRD DSGTAVAAGALPVPPAGGYYNLYANGMLQEGELSTLSATNLVITTAALLPGTPVIVEIHD YTGTTSASASTPNLTVTTTVNT >gi|333605512|gb|AFDH01000084.1| GENE 70 75062 - 75967 891 301 aa, chain - ## HITS:1 COG:VC1285 KEGG:ns NR:ns ## COG: VC1285 COG3394 # Protein_GI_number: 15641298 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Vibrio cholerae # 16 293 3 243 252 75 25.0 1e-13 MSLAEALGYRPDEKLLIVNADDYGMCHAANEGIAQLLTEGAVSSATVMMPCGWAKEAADW AAAHPQTDVGVHLTFTSEWAPYKWGPVTRHGSVASLVTQEGYFPADSASFERRADPEEVR TEIVSQIELAMRMGVMPTHLDNHMGSLYGLGTGRDFLGIVFDICAAYGLPFRIPRYVDMG LEVPAEAAKMAGLRAAQADAKGVVILDYLLGLPFHTEKGETYESFRGSVMQLLKALKPGV SEFILHPALPAEELKAINPHWQKREWEFRLFRDPEIKGLLAAEGIRLIGWSELQRLQRAP R Prediction of potential genes in microbial genomes Time: Sun Jul 17 09:39:44 2011 Seq name: gi|333605429|gb|AFDH01000085.1| Paenibacillus sp. HGF7 contig00156, whole genome shotgun sequence Length of sequence - 90841 bp Number of predicted genes - 86, with homology - 78 Number of transcription units - 52, operones - 23 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 240 - 287 13.4 1 1 Op 1 . - CDS 305 - 3424 1338 ## Nther_2693 S-layer domain protein 2 1 Op 2 . - CDS 3523 - 3666 139 ## - Prom 3755 - 3814 6.7 - Term 4610 - 4645 -0.5 3 2 Tu 1 . - CDS 4726 - 5100 103 ## RB2501_10897 hypothetical protein - Prom 5290 - 5349 6.1 - Term 5316 - 5351 -0.2 4 3 Tu 1 . - CDS 5550 - 5732 60 ## - Prom 5779 - 5838 6.8 5 4 Tu 1 . - CDS 6137 - 6589 33 ## Tthe_1478 hypothetical protein - Prom 6624 - 6683 1.6 - Term 6709 - 6753 16.0 6 5 Op 1 . - CDS 6775 - 7734 779 ## COG1073 Hydrolases of the alpha/beta superfamily - Prom 7774 - 7833 2.2 7 5 Op 2 . - CDS 7883 - 8719 332 ## COG2365 Protein tyrosine/serine phosphatase 8 5 Op 3 . - CDS 8739 - 11219 1338 ## COG3250 Beta-galactosidase/beta-glucuronidase - Prom 11349 - 11408 3.1 9 6 Op 1 . - CDS 11412 - 12188 455 ## PROTEIN SUPPORTED gi|163764775|ref|ZP_02171829.1| ribosomal protein L16 - Prom 12212 - 12271 3.3 10 6 Op 2 . - CDS 12282 - 13295 216 ## COG0657 Esterase/lipase 11 6 Op 3 . - CDS 13298 - 13945 310 ## COG2755 Lysophospholipase L1 and related esterases 12 6 Op 4 7/0.000 - CDS 13972 - 14847 499 ## COG0395 ABC-type sugar transport system, permease component 13 6 Op 5 2/0.083 - CDS 14862 - 15803 973 ## COG4209 ABC-type polysaccharide transport system, permease component - Term 15932 - 15984 1.6 14 7 Tu 1 2/0.083 - CDS 15992 - 17533 502 ## PROTEIN SUPPORTED gi|15900035|ref|NP_344639.1| ABC transporter, substrate-binding protein - Prom 17571 - 17630 4.5 - Term 17644 - 17671 -0.8 15 8 Op 1 7/0.000 - CDS 17691 - 19265 712 ## COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain 16 8 Op 2 . - CDS 19276 - 21012 997 ## COG2972 Predicted signal transduction protein with a C-terminal ATPase domain - Prom 21045 - 21104 6.7 - Term 21968 - 22002 4.0 17 9 Tu 1 . - CDS 22140 - 24758 2292 ## COG0209 Ribonucleotide reductase, alpha subunit - Prom 24856 - 24915 7.3 + Prom 25087 - 25146 6.3 18 10 Tu 1 . + CDS 25304 - 26143 776 ## COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase + Term 26164 - 26212 18.0 - Term 26152 - 26200 18.0 19 11 Op 1 . - CDS 26206 - 26454 79 ## 20 11 Op 2 . - CDS 26462 - 27280 725 ## COG2746 Aminoglycoside N3'-acetyltransferase 21 11 Op 3 . - CDS 27310 - 28152 829 ## COG0095 Lipoate-protein ligase A - Prom 28229 - 28288 2.7 + Prom 28189 - 28248 2.9 22 12 Op 1 . + CDS 28489 - 30288 1864 ## COG0553 Superfamily II DNA/RNA helicases, SNF2 family 23 12 Op 2 . + CDS 30269 - 31555 783 ## Pjdr2_3992 hypothetical protein + Prom 31584 - 31643 6.5 24 13 Tu 1 . + CDS 31671 - 32747 457 ## Pjdr2_3993 hypothetical protein + Term 32996 - 33033 -0.9 - Term 32739 - 32804 11.2 25 14 Op 1 . - CDS 32853 - 33053 105 ## gi|167463286|ref|ZP_02328375.1| hypothetical protein Plarl_12116 26 14 Op 2 . - CDS 33101 - 33169 111 ## - Prom 33331 - 33390 2.2 + Prom 33139 - 33198 4.9 27 15 Tu 1 . + CDS 33335 - 33745 302 ## BCE_0989 hypothetical protein + Term 33763 - 33802 10.5 - Term 33751 - 33790 10.1 28 16 Tu 1 . - CDS 33821 - 34474 774 ## COG0670 Integral membrane protein, interacts with FtsH - Prom 34521 - 34580 6.6 - TRNA 34640 - 34726 61.0 # Leu CAG 0 0 - Term 34824 - 34865 7.0 29 17 Tu 1 . - CDS 34889 - 35575 541 ## COG0706 Preprotein translocase subunit YidC - Term 36014 - 36056 5.0 30 18 Op 1 . - CDS 36188 - 37150 897 ## COG1865 Uncharacterized conserved protein 31 18 Op 2 . - CDS 37155 - 37403 221 ## PPSC2_c1932 hypothetical protein + Prom 37539 - 37598 4.1 32 19 Tu 1 . + CDS 37692 - 38003 535 ## Aflv_0402 hypothetical protein + Term 38009 - 38045 10.3 - Term 37997 - 38033 10.3 33 20 Op 1 . - CDS 38052 - 38378 273 ## Pjdr2_3998 hypothetical protein - Prom 38403 - 38462 4.8 34 20 Op 2 . - CDS 38478 - 39050 497 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins - Prom 39073 - 39132 3.7 + Prom 39122 - 39181 4.9 35 21 Tu 1 . + CDS 39394 - 40050 605 ## Pjdr2_4000 hypothetical protein + Term 40063 - 40124 24.2 - Term 40064 - 40098 7.5 36 22 Tu 1 . - CDS 40102 - 40713 252 ## PROTEIN SUPPORTED gi|154175107|ref|YP_001408238.1| ribosomal protein L22 - Prom 40775 - 40834 1.8 37 23 Tu 1 . + CDS 40823 - 41863 1241 ## COG3949 Uncharacterized membrane protein 38 24 Tu 1 . - CDS 41801 - 42130 71 ## 39 25 Tu 1 . - CDS 42251 - 42769 14 ## - Prom 42811 - 42870 2.0 - Term 42852 - 42905 5.4 40 26 Op 1 . - CDS 42973 - 43947 477 ## PROTEIN SUPPORTED gi|163762640|ref|ZP_02169704.1| ribosomal protein L33 41 26 Op 2 . - CDS 43966 - 44754 810 ## COG1349 Transcriptional regulators of sugar metabolism 42 26 Op 3 . - CDS 44779 - 45837 1225 ## COG2222 Predicted phosphosugar isomerases - Prom 45865 - 45924 7.9 + Prom 45808 - 45867 7.0 43 27 Op 1 2/0.083 + CDS 45928 - 46797 1037 ## COG0191 Fructose/tagatose bisphosphate aldolase 44 27 Op 2 . + CDS 46823 - 47752 983 ## COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) + Term 47847 - 47895 11.1 + Prom 48018 - 48077 2.7 45 28 Op 1 . + CDS 48124 - 49593 1283 ## Tthe_0373 GerA spore germination protein 46 28 Op 2 . + CDS 49630 - 50718 1014 ## Thebr_0187 spore germination protein 47 28 Op 3 . + CDS 50715 - 51785 1054 ## Pjdr2_3167 germination protein, Ger(X)C family + Term 51819 - 51868 7.8 - Term 51805 - 51854 7.8 48 29 Op 1 5/0.083 - CDS 51863 - 55228 2722 ## COG4717 Uncharacterized conserved protein 49 29 Op 2 . - CDS 55225 - 56670 1022 ## COG0420 DNA repair exonuclease 50 29 Op 3 . - CDS 56711 - 57835 1233 ## COG0438 Glycosyltransferase - Prom 58015 - 58074 2.7 + Prom 57982 - 58041 5.0 51 30 Tu 1 . + CDS 58115 - 59242 1161 ## COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain + Term 59300 - 59337 -0.9 - Term 59284 - 59330 5.0 52 31 Tu 1 . - CDS 59332 - 59538 236 ## gi|167461941|ref|ZP_02327030.1| hypothetical protein Plarl_05195 - Prom 59574 - 59633 5.9 + Prom 59628 - 59687 8.8 53 32 Op 1 6/0.083 + CDS 59723 - 60103 425 ## COG1396 Predicted transcriptional regulators + Term 60153 - 60197 0.4 + Prom 60210 - 60269 8.0 54 32 Op 2 . + CDS 60305 - 60685 443 ## COG1396 Predicted transcriptional regulators + Term 60730 - 60783 11.0 - Term 60719 - 60771 9.2 55 33 Tu 1 . - CDS 60797 - 61066 370 ## - Prom 61145 - 61204 7.8 56 34 Op 1 . + CDS 61425 - 62057 766 ## COG0778 Nitroreductase 57 34 Op 2 . + CDS 62104 - 62415 362 ## COG0526 Thiol-disulfide isomerase and thioredoxins + Term 62469 - 62518 8.3 - Term 62511 - 62541 3.0 58 35 Tu 1 . - CDS 62551 - 63588 1286 ## Btus_0938 hypothetical protein - Prom 63657 - 63716 2.3 - Term 63724 - 63772 1.1 59 36 Op 1 2/0.083 - CDS 63815 - 65335 1854 ## COG0477 Permeases of the major facilitator superfamily 60 36 Op 2 . - CDS 65393 - 66208 933 ## COG0561 Predicted hydrolases of the HAD superfamily 61 37 Tu 1 . - CDS 66321 - 67076 750 ## COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases + Prom 67082 - 67141 1.6 62 38 Op 1 . + CDS 67173 - 67292 78 ## + Prom 67319 - 67378 3.3 63 38 Op 2 . + CDS 67464 - 67973 605 ## COG0526 Thiol-disulfide isomerase and thioredoxins + Term 67975 - 68023 16.4 - Term 67952 - 68021 27.2 64 39 Op 1 . - CDS 68039 - 68662 625 ## Tthe_0143 hypothetical protein 65 39 Op 2 8/0.000 - CDS 68646 - 69521 1031 ## COG1131 ABC-type multidrug transport system, ATPase component 66 39 Op 3 . - CDS 69518 - 69904 394 ## COG1725 Predicted transcriptional regulators - Prom 69942 - 70001 11.8 - Term 69989 - 70026 4.3 67 40 Tu 1 . - CDS 70057 - 71415 1195 ## COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs - Prom 71459 - 71518 6.1 + Prom 71444 - 71503 5.9 68 41 Tu 1 . + CDS 71553 - 72500 793 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily + Term 72620 - 72650 4.3 - Term 72608 - 72638 4.3 69 42 Tu 1 . - CDS 72719 - 73201 467 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - Prom 73230 - 73289 1.9 70 43 Op 1 . - CDS 73355 - 73765 416 ## COG1547 Uncharacterized conserved protein 71 43 Op 2 . - CDS 73767 - 74570 971 ## COG2357 Uncharacterized protein conserved in bacteria 72 43 Op 3 . - CDS 74592 - 75695 974 ## COG0167 Dihydroorotate dehydrogenase - Prom 75831 - 75890 6.7 - Term 76014 - 76064 10.1 73 44 Tu 1 . - CDS 76091 - 77608 1388 ## COG1376 Uncharacterized protein conserved in bacteria - Prom 77755 - 77814 1.9 - Term 77748 - 77802 14.1 74 45 Op 1 . - CDS 77819 - 78055 298 ## COG1141 Ferredoxin - Prom 78088 - 78147 3.5 - Term 78121 - 78168 2.1 75 45 Op 2 . - CDS 78215 - 79495 1207 ## COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair - Prom 79683 - 79742 4.8 + Prom 79632 - 79691 4.9 76 46 Tu 1 . + CDS 79753 - 81369 1716 ## COG0119 Isopropylmalate/homocitrate/citramalate synthases - Term 81320 - 81369 -0.1 77 47 Tu 1 . - CDS 81503 - 82039 282 ## COG0526 Thiol-disulfide isomerase and thioredoxins - Prom 82066 - 82125 5.1 + Prom 82025 - 82084 5.2 78 48 Op 1 . + CDS 82223 - 83524 1274 ## COG0477 Permeases of the major facilitator superfamily 79 48 Op 2 . + CDS 83564 - 84229 115 ## gi|167465014|ref|ZP_02330103.1| hypothetical protein Plarl_21056 + Term 84240 - 84289 4.4 - Term 84228 - 84277 4.4 80 49 Op 1 6/0.083 - CDS 84318 - 85046 829 ## COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases 81 49 Op 2 1/0.167 - CDS 85067 - 86194 973 ## COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains 82 49 Op 3 . - CDS 86233 - 87660 1541 ## COG0004 Ammonia permease - Prom 87766 - 87825 7.1 + Prom 87766 - 87825 7.1 83 50 Op 1 . + CDS 88001 - 88399 569 ## Pjdr2_2140 transcriptional regulator, MerR family 84 50 Op 2 . + CDS 88440 - 89126 660 ## COG2738 Predicted Zn-dependent protease + Term 89174 - 89211 6.0 - Term 89161 - 89198 6.0 85 51 Tu 1 . - CDS 89269 - 90204 258 ## PROTEIN SUPPORTED gi|149913192|ref|ZP_01901726.1| 50S ribosomal protein L35 - Prom 90225 - 90284 3.2 + Prom 90269 - 90328 5.2 86 52 Tu 1 . + CDS 90375 - 90840 519 ## COG2077 Peroxiredoxin Predicted protein(s) >gi|333605429|gb|AFDH01000085.1| GENE 1 305 - 3424 1338 1039 aa, chain - ## HITS:1 COG:no KEGG:Nther_2693 NR:ns ## KEGG: Nther_2693 # Name: not_defined # Def: S-layer domain protein # Organism: N.thermophilus # Pathway: not_defined # 2 95 80 173 189 84 52.0 3e-14 MALGLKEEPAKSASFHDVDASSWYSGYVGSLVASGITQGTTDSTFSPEAKVTREELVVFF VRAFGLAESVSVKSPATKLTDLHLASDWAKPSISLAYEIGFVNGIDGEGGLLFKPKSSSD RQAVARLAYEFKTNNKAYLSKAEEILASKPEVTQPAQQIQSLVSQSSTTIEVTFSSALTE LNKEDFKFDHDLLVTAADFKSGSKTIVVLTTTSQNSGTKYVLTYKGKPSGKSVEGTSPVF GGGGFGGGGVPGGVTPTVEQLLASGKPQTAITVQSSGTYGPANGKTNVQTLILDPGPTGE VSLNNIDAEQMEVRSGSVSSIKLRNAVVKNLKINAVNNNGLPVRVEAGDGTQITHTEVTT QAVLEGSSGQSGFGKIKLDVSGKKVSFKGKIDSEITVISPGMTIFIESPTAGNNQPTMLT RLTVAAADTIVDIAPVAILSEISSSQSVTLTGDSESIAKIKLVGGGSFKLDPAGVNEVKE KAIANANKALKDYLAASGDFSEILAKVLEADRTIQIAKQYGAQDQDFTNTYSFYFNRDTV YELNEALTALTIGYVPGDSADHVTERPSLPDNNGKNTLITWSSSDTNVLSPWSLYLTRPA SGAGDKEITLTATLFNKAFTATKSFKITVKQLNATVKTVTGLKPDLLVVEFDAAVAAQEA SWYQFNNGLQVLKTTQYPQYPNLVLLGVNSQKAGSNYNFTYKNAPTGITFTGSAANECSA EWCTIPGSGQKVPVPGVNVPGEIEGFVLEGMTKPAEDAEVSLTGTGLTTKTDSRGHFKFT NVAPNVSYTLSATKPGYSIANTAKFSLAPGQTVQAAGINIFTSPAPVTNVKITPVYFTDK ILLSWTPSYSLGSSVTFNIYQNRTISVANYAGTQLLLESLKAGETYTFSVEACNEVGCSQ MSAEQTIQMPLNLSVSSLQPYNSVTSDVYDAFKAMGKNEYYLSQPYPNFDSVLVEFKEGL DDGTLGTPAAQADLDLTTAKIIGIEGQSFNASVQIYQGKTYLKIDINPSVYAKSGTYVIS GVKYKQKAAEVSPFSIIFK >gi|333605429|gb|AFDH01000085.1| GENE 2 3523 - 3666 139 47 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKLARLRRFMNLFSLSVLVLGMLLPNFVQAASTETLQTWIALTPKKK >gi|333605429|gb|AFDH01000085.1| GENE 3 4726 - 5100 103 124 aa, chain - ## HITS:1 COG:no KEGG:RB2501_10897 NR:ns ## KEGG: RB2501_10897 # Name: not_defined # Def: hypothetical protein # Organism: R.biformata # Pathway: not_defined # 1 123 39 162 163 105 41.0 4e-22 MIMRIELFVKNLNDSVKFYTDVLGFTKGKESDKYISMRNGDAVIGLGVLSLLDDNHYLKP GSESERKGVCVEIVFEVDDIKTYVNKIQNSNHPIETGVTVRPWGATDFRIVDPDGYYIRV TSKN >gi|333605429|gb|AFDH01000085.1| GENE 4 5550 - 5732 60 60 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFHIDDFMIEFAEKLFLPQGESFDQEIHIIIRCMELKDMVRFGNWGLAVSWFRLNEKFLR >gi|333605429|gb|AFDH01000085.1| GENE 5 6137 - 6589 33 150 aa, chain - ## HITS:1 COG:no KEGG:Tthe_1478 NR:ns ## KEGG: Tthe_1478 # Name: not_defined # Def: hypothetical protein # Organism: T.thermosaccharolyticum # Pathway: not_defined # 6 145 118 256 405 103 38.0 2e-21 MITVHYYVAVEYNVRNESKYYMNGINYRIAVVVKDREEWKFAQFSDAPVDQIVFLNKGFN TNDEKKASKMLKERRNGKVFNRKGDLIEDIGVKAEQLDKEEKLRSKNTQAINNLGILSTA DHVRPSSIRVYMSKSQNQINIVVTVLVYHQ >gi|333605429|gb|AFDH01000085.1| GENE 6 6775 - 7734 779 319 aa, chain - ## HITS:1 COG:lin2180 KEGG:ns NR:ns ## COG: lin2180 COG1073 # Protein_GI_number: 16801245 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Listeria innocua # 6 315 2 317 319 298 47.0 9e-81 MKKRTKKWLAAAGIVVALLVSVDVGGSFYFYHVAIERAPKYFLLSSPDLGSRPAAAGFNV DGKAWIDSHPYQEMELTSDDGLKLRGYYWHAPAPTKKTVIIAHGYAGKGKDMGIYAAFYH DKLGYNVLIPDDRGHGESEGDYIGFGWPDRKDYVKWIDLMIGKVGTDAEIVLHGVSMGGA TVLMTSGERLPTNVKAVVADCGYTSVEDQLSYQLDRMYHLPSFPIVQSTSLLTKMRAGYG FAEASALEQVRRTKLPVLFIHGDADTFVPFEMAGELYDAAGGEKELFVVPKARHGKAYQT NPTGYESRVTAFIAKYIQT >gi|333605429|gb|AFDH01000085.1| GENE 7 7883 - 8719 332 278 aa, chain - ## HITS:1 COG:YPO3785 KEGG:ns NR:ns ## COG: YPO3785 COG2365 # Protein_GI_number: 16123919 # Func_class: T Signal transduction mechanisms # Function: Protein tyrosine/serine phosphatase # Organism: Yersinia pestis # 14 278 11 276 276 175 37.0 8e-44 MSTTRDGAYQGQRIILLEGTHNFRDMGGYQTADGRKVKYGIFFRSDELTGLTEQDLAAVQ ALNIKTIFDYRDDYEAQKKPDPVFAGVQNIRIAAIQAEQASRINISGNAENADRNQHFIV DMVKNGFFKQFRADTMMMELYTKLPLGNPSYKRLMEMIQHSYNLGLLHHCTAGKDRTGVG AALILLALGVPEETVMKDYLLTNETMKGFNGKLLSQLAEHVNEVELRNIEHLLGVKEPFM EAAFGSIKKTYGNVDTYFSEEFGLTSQRREALQSMYLE >gi|333605429|gb|AFDH01000085.1| GENE 8 8739 - 11219 1338 826 aa, chain - ## HITS:1 COG:SP0648_2 KEGG:ns NR:ns ## COG: SP0648_2 COG3250 # Protein_GI_number: 15900551 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase/beta-glucuronidase # Organism: Streptococcus pneumoniae TIGR4 # 79 806 77 871 871 350 32.0 6e-96 MRTKENFDRNWMFHVGEVGKIVKTVKKAGMIAGLTNALGEERHEPFAIGEAGRITQNVAR ELLGDPNFELTQIYGSDTPKDKITGWVGVHLPHDWRLEQPYNSERGGAFQGYLPNGVGYY RKVFQIPQEDEGKKIIIEFDGVMRNSSVWVNGCFVGDHLSGYTSFHYDITDLLKYGDKEG DNVILVRTDTTGGDEGWWYEGGGIYRHVWLTKHDYLHVDRWGTFVRTEQIDNEMAAVTVE TTVSNEYPQTMKYGIRTSILNPAGELVAITETDCETPGIDKQTVLQSVQVAKPLLWSQDT PHLYEAVTELLHEGQIVDTYRTIFGIRTVEYRQDGLYLNGKYVQVKGTCNHQDFAGVGIA LPDSVHEYKIKRLLEMGCNAYRCAHHPPAPELLDVCDRLGMLVMNENRIMESTEIKLDDL KSMLYRDRNHPSIFMWSLGNEEKISGSYQAKRMLKRVQDLTKRIDPTRPVTAANLSQEGM DIEVNGVNYAESIKGSQTIGEWFQSHPEAKVLNTENVSFFSARGVYEDDPEGGRCSSYGS RYTMFGKEVDVGNLGGAGGTSTPERSWRYFLNNRFSGGLFVWTGFDYRGETTPFQWPSVL SHFGILDYCGFAKDSYYFYQSIWKDEPIVHLMPHWNWPDRLGQQVEVRVYTNCNEVELML NGQSLGKKQADAEAGEHILSWQLAYEPGLLEAIAYRDGVMVAAERKETTTEAYSVHLEAN RSELLADGQDVSMVTVSVRDQSGRVVPVAGNLIRLHVAGEGKLLGLGNGDPGCHESDKGD TRSVFNGYALALIQSLEKAGEIRIVAYSEGLVPAVLTLQTRKEIAN >gi|333605429|gb|AFDH01000085.1| GENE 9 11412 - 12188 455 258 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764775|ref|ZP_02171829.1| ribosomal protein L16 [Bacillus selenitireducens MLS10] # 16 233 14 229 236 179 46 3e-44 MSGAAANVWQLGHWDLFVRMVLAAVLGGLVGIEREWNNHAAGFRTHILVCLGSTTIMLLS IYGFSDFVAESNVRIDPARLAAQVISGIGFLGAGAILRNGSVIKGLTTAASVWVVAAIGL CVGAGFLFVAFLCTFFVLISLYVLNKWEKHLLRHRKKHEVKCMIIDMPGVLGKVASKFGE QGIQIANVKMMPDEHASPEARGMPTMQLCFTVKNHQEENIVQALEEITALEMVLWTESSY LPALKPAIPVTGKNSMNL >gi|333605429|gb|AFDH01000085.1| GENE 10 12282 - 13295 216 337 aa, chain - ## HITS:1 COG:CAC2917 KEGG:ns NR:ns ## COG: CAC2917 COG0657 # Protein_GI_number: 15896170 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Clostridium acetobutylicum # 20 258 24 268 272 203 41.0 5e-52 MNIPLWHDQPALQGFNEGCPSLTPYLLEGEGPFSAVIVCPGGGYRHRADHEGEPVAKWLN AIGISAFVLHYRVSPAQYPSQLHDAQRAIRTIRHRGPEWNIDPERIGMLGFSAGGHLASM AGTRFDNGNPQANDPIERYSSRPDALVLCYPLITMGEFTNASCKSVLMGERQNDRALIEL LSSEKQVTEETPPIFMWITADDPVVQAENCLMFAAALRKFRVSFEMHLFESGPHGLGLAG GHREAQAWTKLCEAWLKTRNFLLVERVIDEYTTVGRLLADDCSSRVLERYLPDLLASPKI DYLKAFSLKSLFNFSDPMFTDEKLAAILKDLKSGAKK >gi|333605429|gb|AFDH01000085.1| GENE 11 13298 - 13945 310 215 aa, chain - ## HITS:1 COG:SMa2002 KEGG:ns NR:ns ## COG: SMa2002 COG2755 # Protein_GI_number: 16263550 # Func_class: E Amino acid transport and metabolism # Function: Lysophospholipase L1 and related esterases # Organism: Sinorhizobium meliloti # 2 208 4 212 220 163 43.0 3e-40 MTDTRTILCFGDSNTWGADPQNRGVRFPADVRWTGVLRKELGEGYDIVEEGLPGRTTVWT DPIDGIMSGKEYLTSCLLSHRPLDLVVIMLGTNDLKERFSVSALDIAMSTLSLAGLVKTT FSRPGITIVPQVLILVPPPIKETGLFAGMFKGGEEKSKQLSEAFAMLSPYTDASIMDAST VIVSSDADGIHFEAEQHRKLGSAVAEKIKSMLVES >gi|333605429|gb|AFDH01000085.1| GENE 12 13972 - 14847 499 291 aa, chain - ## HITS:1 COG:BH0795 KEGG:ns NR:ns ## COG: BH0795 COG0395 # Protein_GI_number: 15613358 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Bacillus halodurans # 19 290 46 321 322 241 48.0 8e-64 MPSSGKLYQWTINIVMLAFTCFCIMPFWLLISASLTDDMEIIRDGYAFFPKAVSFSAYEY LWTNSANILRAYGITILVTVVGTAAGLTLTALLAYPLSRTEMPFRKILSFYVFFTMLFNG GLVPTYLLYTNFFNLKNTILALIIPNLLMNGFFVILMRTFFATSIPKPIIESAYIDGAKE WKIFAAIVLPLSTPVLATVGLFYTIMYWNDWFNGLIYITDSQYFSLQNMLNRILLDAQFL QSSTEIVATSHLPLTSMRMAIAAIGVVPLLVVYPFFQKYFVKGLTVGAVKG >gi|333605429|gb|AFDH01000085.1| GENE 13 14862 - 15803 973 313 aa, chain - ## HITS:1 COG:lin2117 KEGG:ns NR:ns ## COG: lin2117 COG4209 # Protein_GI_number: 16801183 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type polysaccharide transport system, permease component # Organism: Listeria innocua # 13 313 5 309 309 308 51.0 1e-83 MKASKMSVLRLEMRKAKKYRMLVLMTLPGLLYFLVNNYLPMFGIVIAFKNVNFATGIWGS EWVGFKNFEYLFKTKDAYIITRNTLLYNLSFIVLNTAIAISLAILLNEIRKRILSRAYQT MILLPHLISMVIVGYLVLGFLDVEKGFMNKTLLPLFGLEPISWYSETTYWPWILTIVHAW KGVGHLCIIYLAAIIGIDQEYYEAAKIDGANRWQQIKTITIPLIAPVITIMTLLAIGRIF YSDFGLFFQVPLNTGALMPVTNTIDTYVYRALINMGDIGMSSAAGLYQALVGFVLVLASN AVVRKFNKDNALF >gi|333605429|gb|AFDH01000085.1| GENE 14 15992 - 17533 502 513 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15900035|ref|NP_344639.1| ABC transporter, substrate-binding protein [Streptococcus pneumoniae TIGR4] # 3 513 2 491 491 197 29 1e-49 MKKSMKSAAMLLISVLATSTLVTACSSGSSNQPNASGAPELSGSAKPDLKPVELTMVFPV ASEQKDLKAVQEKINKITKEKINATVKLVQITKGAWAQQTTLMLSGNEKMDLIVSGRGTY EQQVAKGNYLALDDYIAKYGQGAQKALDDLDPAYLKATRINGKSYGITSIRDLANDFGIS MRKDLVDKYKIDTKAIRSLDDLDAVFKVIKENEPDVIPVTKFANSILGSTPFSTGMMDPL GDGFGVLTAHDNGMKVVNWVETPEYAKLLDTTRRWYLAGYVAKDAATSTEIWQNLMKAGK AFSTFHHMSPFSEAANSLSVGKDLVEVRLLPAVATNSHITAYMWSIPRNAQDPERSMMLL NLMYTDKDLVNLLDWGIEGQHYVKKSDNVIDFPQGVNASNSGYYPYQNWLFGNMFLSYLF NGEDPDRNKKLAEFIKNSKKSKALGFIYNPESVKTEIAALTNVSNQYALALETGTVDPAK VLPEYIKQMKAAGIDKVIAEKQKQLDAWAAANK >gi|333605429|gb|AFDH01000085.1| GENE 15 17691 - 19265 712 524 aa, chain - ## HITS:1 COG:BH2109 KEGG:ns NR:ns ## COG: BH2109 COG4753 # Protein_GI_number: 15614672 # Func_class: T Signal transduction mechanisms # Function: Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain # Organism: Bacillus halodurans # 1 520 1 523 525 121 23.0 4e-27 MYRLLIVDDEEFTANGIKASVNWSKFGIIHVSVANNARQAKEKFSEHPFDMMICDIEMPQ GSGLELYEWVREEHPWTECVFLTCHADFQYAKKAIQLGSFEYLLKPAPPEELEQVMTEMI KKISKDRKSSSIVIERFWQDVLQQVIPSRPDKIMEAIGKHNIPYTSRMKFLPILIGIQHW TKELSARDAQIMEYALTNALEELVIHQVATAHIVRIKAKQLLAVFSTEQAIEASGEKFRK ELIKRCGLFIETCNRYFYCHLSCYIGQPSEIHDVRDMVENLVALRKNQVNAVDRVVLIDE KMANETPFPMPPMRIWSELIKQGDKKKLMAESQDFLESLKRIEGLNSKSLQQFYLSFLQM VLHTLQQKGLYTDDILADHFAPERISSAAESVKNLQDWVTDVLKFAMTSIEALGSNETVV EKIKRYISANIDQEMSRQYIADYIGLSPDHIVKLFKKETGLSISEYILKERIDLAKELLA KSETSISNVALAVGFANFSYFSTLFKKEVLMTPQEYRKRFSSSM >gi|333605429|gb|AFDH01000085.1| GENE 16 19276 - 21012 997 578 aa, chain - ## HITS:1 COG:BH3447 KEGG:ns NR:ns ## COG: BH3447 COG2972 # Protein_GI_number: 15616009 # Func_class: T Signal transduction mechanisms # Function: Predicted signal transduction protein with a C-terminal ATPase domain # Organism: Bacillus halodurans # 209 578 215 595 602 143 27.0 9e-34 MRKPPPTIFNSLRFKLITGLMLIMLPIVLFLIYTNFYSIQVVRNQVAQSNSNMISLYMGL IDKSLADIDSYLLKYASEETGLHVLDRSPEIDIDLYKMERIWQFKQLVNNVTYYEGLDYF FIYSPINNDLLFAPKQTVSADADNQPIKDAIVWLIDDGQSAESFQTGKWSVFRANKKDYL LYTIKVGGLYIGAGVNTQDVTGPLNLLDLGADGRALLVDGNHKPLKDESFFREQGIDLSY TPKSYRLSGFDEGYLVIGEHSGKGDFGLVAVVPDQSILQKLPYLQRIISLIAAGTVLILL LAFYYMRRVVLRPINRIVLAMRRIKEGHLEMRIAKTPTSNEFELMNEMFNSMVTDIQKLK IDVYEEQLINQKAELKHLQLQVNPHFFLNSLNVVYYLAQERKYGLIQELSLSLIRYFRFM FRSHTDHVLVRDELGHTKNYLNIQKIRFPGSLTYAITVPDDLLDCCIPPLIIQSFAENTI KHAVNTDEPTHIEISIERDNRNDEERLHIRIRDTGMGYENEVLEKLRQDIKLTTEEGEHI GIWNARQRLRLLYGGQAIIGFSNDNGAIVDIFLPIMKG >gi|333605429|gb|AFDH01000085.1| GENE 17 22140 - 24758 2292 872 aa, chain - ## HITS:1 COG:AF1664 KEGG:ns NR:ns ## COG: AF1664 COG0209 # Protein_GI_number: 11499254 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, alpha subunit # Organism: Archaeoglobus fulgidus # 83 871 23 751 752 373 33.0 1e-103 MKTMQRKSLEGLSEKIFLDRYALKDADTNNTKVGDVVLVLTKDDPKFPAKEVGEITARDG RNVTVKLRSGETIESNIDRLTLNIEKTPDELWDRLAKAMASVEATPEKQKEWTEKFRYIL DDWKLVPGGRIAAGADASDELTLFNCYVIPSPHDSRGGIMATLSEMTEIMSRGGGVGINL SSLRPRRAIVKGVNGSSSGSVSWGGLFSYTTGLIEQGGSRRGALMLMINDWHPDLLDFIT VKSTMGQITNANLSVCVSNGFMKAVKEDLDWDLVFPDTTDPEYDEVWNGDLNEWKKLGKA VKVYRTVKAREVWHTIIESAWRSAEPGVVFMEYYNQMSNSWYFNPIICTNPCGEQGLPAW GVCNLSAVNLSKFYDEENDDVAWDELGKTVRYSTRFLDNVIDKTPYHFEENRENQQGERR VGLGTMGLAELMIKLRIRYGSPESLEFLDKIYGFMAREAYLASSEIAGEKGSFKHFDTEK FLQSGFMKNMHEVYPEVTESVRKNGMRNVTVITQAPTGSTGTMVGTSTGIEPYFAFEYFR QSRLGYDKQFVPIAQEWKDANKDQDLPDYFVTSMTLSAEDHIRVQAAIQRWVDSSISKTA NCPADFTVEETERLYELAFDLGCKGVTIYRDGSRDVQVLSTGTEKDKKDEKKAEAAVPAP EVPTEAPSVAVAAEPVVQADAISGNVFDKEYKRRPQILRGATYKINTPFGMAYITINDMN GSPSEIFLNVGKAGSDVFAMAEALGRVCSLFLRYGDHGNKVNLLIKHLKGIGGSGAIGFG ANRVESIADAVAKALEMHEEAMAGETDAEAYVTATKEVVQEAPDALSDAAPPAGAAPAGL TSLDLCPSCGSASLVNSEGCKNCTNCGYSRCS >gi|333605429|gb|AFDH01000085.1| GENE 18 25304 - 26143 776 279 aa, chain + ## HITS:1 COG:SA1571 KEGG:ns NR:ns ## COG: SA1571 COG0115 # Protein_GI_number: 15927327 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase # Organism: Staphylococcus aureus N315 # 2 278 4 281 282 260 45.0 3e-69 MMLFGNQLVPDEEVRVSPLDRGYYFGDGVYEVFRIYDGRLFEVQGHMERFKRSMAEVRIG LPYPLEELENLLNRLTEAAGIPDGLTYVQITRGAAPRSHPFPAAAEPVVTGWCSPFLRPL KDLENGISAIVREDIRWHRCDIKSLNLLPNVLLKQEALDGGAGEVIFNRGGVITEASASN VMIVKDGIVRTHPADHHILRGVTRSLVIRLAEGLGIAVREEAFRAEELASADEVFITSTG SEVMPVVLVDSRPVGDGKPGPVTRRLQQAFEAAIPAGSR >gi|333605429|gb|AFDH01000085.1| GENE 19 26206 - 26454 79 82 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MAAAAWFAPVYACVADRRHVTLSTATARWESSAVRNTERAQGGRLVRTAGLTGANEPRGP GEYRMRKAAAYRFPPSAAPLPR >gi|333605429|gb|AFDH01000085.1| GENE 20 26462 - 27280 725 272 aa, chain - ## HITS:1 COG:alr1528 KEGG:ns NR:ns ## COG: alr1528 COG2746 # Protein_GI_number: 17229020 # Func_class: V Defense mechanisms # Function: Aminoglycoside N3'-acetyltransferase # Organism: Nostoc sp. PCC 7120 # 14 271 13 266 274 260 53.0 2e-69 MAIDTIIERTGKRPHTAESLAEDLRRLGVKEGMTLLVHSSLSSLGWVCGGTQAVIAALRD ALGSGGTLMMPTHSGDLSEPSAWSNPPVPQEWWDVIRSTMPAYKAEETRTFFMGALPEAF RTYPGVMRSSHPQVSFAAIGPQAQKLTGDHSLAYGLGEGSPLARLYELDGHVLLLGVGHG SNTSIHLAEYRAEYASKKEVANGAPVLDGDGVRQWVEFPDVGIDSDDFDRAGADFEARHS VVIRGKVGSADTALMPQRPLVDYAAEWMRQHR >gi|333605429|gb|AFDH01000085.1| GENE 21 27310 - 28152 829 280 aa, chain - ## HITS:1 COG:BS_yqhM KEGG:ns NR:ns ## COG: BS_yqhM COG0095 # Protein_GI_number: 16079509 # Func_class: H Coenzyme transport and metabolism # Function: Lipoate-protein ligase A # Organism: Bacillus subtilis # 3 280 5 278 278 324 57.0 1e-88 MTTWRYMHTGNRTAAENMAIDEAILIAHSEGRVPPTVRFYGWGPAALSIGYFQKAQKEID LDKVAGQGLGFVRRPTGGRAVLHDAELTYSIIVSERYPGIPTSVTEAYRVLSEGLLLGFR KLGLAAEMVNLATEEEKRKYESLGSAACFDSPSWYELVVEGRKVAGSAQVRQKNVVLQHG SILLELDVEQLFGLLLFSNERIAERMKQSFVQKAVAINDLLRSAGLAPVTLGDVETAFRA GVAEGMGIELEDGALTPYELELAEELAREKYSSDEWNLKR >gi|333605429|gb|AFDH01000085.1| GENE 22 28489 - 30288 1864 599 aa, chain + ## HITS:1 COG:BH2817 KEGG:ns NR:ns ## COG: BH2817 COG0553 # Protein_GI_number: 15615380 # Func_class: K Transcription; L Replication, recombination and repair # Function: Superfamily II DNA/RNA helicases, SNF2 family # Organism: Bacillus halodurans # 23 577 10 557 566 595 53.0 1e-170 MNNQTTEHIRPIHEGLSMHTDREWFLDWESRVVRNGPWDNWTLYQLAYEAEKSSLIHSFD ELLCLKHVNGIEPMSHQIDTAKKVLYDMRGRAILADEVGLGKTIEAGLILKEYMIRGLVR KALILVPASLVLQWVRELNQKFGIAAAAQKKSYMWQTCDVIVASMDTAKRDPHREIVLGL DYDMLIVDEAHKLKNKKTTNYQFVGELRKKYCLLLTATPVQNDLKELYNLINLLKPGQLG AQTNFQANFVMAKRMPKNEGVLQQELSKIMIRNRRGDGNVEFKKRIVKNITLTLSPEEQA LYDGVTDFIRSQYEQNQSQPSNTLALVTLQREVCSSRDAVFITLVNMFKKTEENSPVRAK IWELVERIRSIQANTKAETVLNLIREIDDKVIIFTEYRASQEYLLNYLRENKITAVPYRG GMNRGKKDWMMDLFRTRAQVLVATEAGGEGINLQFCHHMINFDLPWNPMRVEQRIGRVHR LGQTDDVRIYNLSTRNTIEEHILNLLHEKINMFELVIGELDSILERLEKKSASLESSLFK MMMESRSDDDMRRQIDRLGDSLTGIREELEPENERKAKIGSILSAIGQNVGVNHEYRPG >gi|333605429|gb|AFDH01000085.1| GENE 23 30269 - 31555 783 428 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_3992 NR:ns ## KEGG: Pjdr2_3992 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 206 427 91 310 310 177 42.0 6e-43 MNTAQVERFVMRFLEAYNCRIIEKTKHAVIVNLSPEADKELTGRSYYWSFVERTGVEPET MTYRFVFDPEGDAAAAAAARPVPAGPLNGPLGAVSTAPGPQPGAVDRQAQGAAGPGNGPQ GGLSAATAGPGAAAGAVSAAPGAAGGGGQAAGGGTEPAGSSGRPSPQGTLTAGAAGPGAP AASVPGGAAPAAGSGGSPPEAIRSADSILGRYFGTAPAPPVGRVPRDEVTFGSRRLQQLF ATALNNGRFTRLFEAPPQAASSSQPGRSAPLTYCSWMNVNYKVEYACDMKRSEVHSLAIQ MTTGEIREEFHPSMLTRKLAPKLPANIHLLGDNLTLSRAASILEDYLEQKIRRTDHRWAD RANQVLAEEHQLVRLYYEGMLAAAEPEAREELEIRYAARQAEVDWQYRPRVHVSVINCGL FHLRADER >gi|333605429|gb|AFDH01000085.1| GENE 24 31671 - 32747 457 358 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_3993 NR:ns ## KEGG: Pjdr2_3993 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 91 348 10 266 267 115 32.0 3e-24 MNRTAVWTAALLALVVWLAAGPPSFSQGEQLFSQEAQASLSGSATRMKQEAGRASLDKRY TILPGVRPAEVLADFKANEPSDTPGASNTGTVLNEHIVRWIDSLAGRKGFEGWNRAKWTV APLGPGTHGWIVLLTDNGRETGYLIVSAAENGTLQLIEYGTGEHPLFSTRTLYRTLVQHA IIPASMSYQAWLDSAETRLRRLYTDAFHAVWTVPAGNNRILVDAKTGEIRTFQNYSPASD SSLLGLHGAAFEHTPGTPLEVMPSDPYEEIAWLTRKALPIRSYEDLTPYLAAGKSLTFVC ECFEGRLTLPLPVTGALRWTGGAAFIAFEQEGRRFVLLDEAVSLGQFYPTDGISSSFP >gi|333605429|gb|AFDH01000085.1| GENE 25 32853 - 33053 105 66 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|167463286|ref|ZP_02328375.1| ## NR: gi|167463286|ref|ZP_02328375.1| hypothetical protein Plarl_12116 [Paenibacillus larvae subsp. larvae BRL-230010] # 1 55 1 55 83 64 56.0 3e-09 MAKGGEELVKYITEQVVHYIETPRQVRKEARVRHKETRESWSVHWFGMIPLSISMIIKAV RRRSKN >gi|333605429|gb|AFDH01000085.1| GENE 26 33101 - 33169 111 22 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MERVMTGNVRMAGFTQRQSGKY >gi|333605429|gb|AFDH01000085.1| GENE 27 33335 - 33745 302 136 aa, chain + ## HITS:1 COG:no KEGG:BCE_0989 NR:ns ## KEGG: BCE_0989 # Name: not_defined # Def: hypothetical protein # Organism: B.cereus_ATCC10987 # Pathway: not_defined # 1 136 1 137 137 110 42.0 2e-23 MKLTVFYDGQYWIGIAEDERSGSLHAARHIFGTEPLDGEVLDFVLHDLLRLLESVGKGVR AAPAVERKINPKRLARLASRELAQKGPSTMAQAAIRADLEYRKKVRTTLSREEREADAAR KREIARQKAKDKHRGR >gi|333605429|gb|AFDH01000085.1| GENE 28 33821 - 34474 774 217 aa, chain - ## HITS:1 COG:BS_yetJ KEGG:ns NR:ns ## COG: BS_yetJ COG0670 # Protein_GI_number: 16077787 # Func_class: R General function prediction only # Function: Integral membrane protein, interacts with FtsH # Organism: Bacillus subtilis # 1 207 1 206 214 111 39.0 8e-25 MERTMTYSHQGSLSHILRTFALSLLISFVGMLVGAMIVPPSIIPLFIVVELVMIVAAIVV RMRGKNIGYGFLYAFTAISGVTMYPVIMSYGSIIGANLVSGAFLATAVIFGGLAWYAARS EKDFSFLGGFLFAATIGLVLMGVLSLFVNFGSTLNLLLSVGGILIFSGWVLYDVAQYREG VAAEEVPLAAMNLYLDFINLFLYILRFIASIVGISRD >gi|333605429|gb|AFDH01000085.1| GENE 29 34889 - 35575 541 228 aa, chain - ## HITS:1 COG:HI1001 KEGG:ns NR:ns ## COG: HI1001 COG0706 # Protein_GI_number: 16272937 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YidC # Organism: Haemophilus influenzae # 14 217 339 537 541 96 28.0 4e-20 MSLLQPFISLLDRILNVLAAFTNDWGLAILLLALLVRSLLFRVNLLSARQQVRQIRMQPA IRQLREQYANQSGKLGEEMLRLYSRYGIKPGLAFAAGLIQMPIFMSLYPYFSLHGAQMTS MLIPWMQSLGVPDPAHALPVLYGIIGWLGMLISLVPDPAASQPALLRAGMPLVIMGVSLT VMWRSPAALVLYWTGSGIVTILERLFFRSSYGQKLLHKGIPVPEPVKD >gi|333605429|gb|AFDH01000085.1| GENE 30 36188 - 37150 897 320 aa, chain - ## HITS:1 COG:AF1400 KEGG:ns NR:ns ## COG: AF1400 COG1865 # Protein_GI_number: 11498995 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Archaeoglobus fulgidus # 221 309 102 184 188 75 48.0 1e-13 MNTQETLIQTVNRPAAAITAAVKEGAVGSYLLLEAPSPLRTLSSAPWGGGFGYHRTIINR KVDKTYACGDPVTEMNGFLEAAGLNREETACLLTSVHMSGLGESHLCLDAPAPVRVGAED QAARSFLDTSGVKPDTPMPSKEYPSAAADSDTANVTADLDEANAKDFGTANPVNGIGAAE PSATAAAAADTGIAVSAWVTVGYSNKARAGRGLPASALFPGTINIIVAVEGELTDEAMVN AVITATEAKAAALQDLGVALEDGSGATGTTTDAVLIASTQRGRLHRYAGTATYLGHMIGR SVYEAAMQSGLAYKKVLPLP >gi|333605429|gb|AFDH01000085.1| GENE 31 37155 - 37403 221 82 aa, chain - ## HITS:1 COG:no KEGG:PPSC2_c1932 NR:ns ## KEGG: PPSC2_c1932 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa_SC2 # Pathway: not_defined # 1 66 31 96 103 72 50.0 5e-12 MISDEQLDRYRIDGTLLRIVRDADPRNDIRGYVVAWNESSVAIRKRSRKLVQLDRKYVYQ PYTESRPAEYTLPRETSEGEEA >gi|333605429|gb|AFDH01000085.1| GENE 32 37692 - 38003 535 103 aa, chain + ## HITS:1 COG:no KEGG:Aflv_0402 NR:ns ## KEGG: Aflv_0402 # Name: not_defined # Def: hypothetical protein # Organism: A.flavithermus # Pathway: not_defined # 4 102 51 149 151 85 43.0 7e-16 MDGKKTFYVSVGSKQIVDEADEINFDFEIKATDEEIDKLAELFEVIDESDEQTHFRALLP FKEYHKDKENDAYDYDLKQIYQTLYNLGTEETRKHIEEMNVLN >gi|333605429|gb|AFDH01000085.1| GENE 33 38052 - 38378 273 108 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_3998 NR:ns ## KEGG: Pjdr2_3998 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 6 108 2 104 104 149 73.0 5e-35 MGNEQIPAEYLLEKLSEAKNHFERALDCKHTEFDDLYPYMIEHPQFFWYKRYVAWSELLT VVKFFTELSVPWESQFTVQQVDYIKKRVMSSKVLDCWFENTDSKEHVG >gi|333605429|gb|AFDH01000085.1| GENE 34 38478 - 39050 497 190 aa, chain - ## HITS:1 COG:BH1514 KEGG:ns NR:ns ## COG: BH1514 COG0503 # Protein_GI_number: 15614077 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Bacillus halodurans # 1 190 1 190 198 194 54.0 1e-49 MELLKQRILEAGSVVSDQVVKLDAILNHQVDPALIKEMGREFARRFVESSPTKVLTVESS GIPLSFAVASELGVPFIFARRKKSVTMGEDTYCERVPSFTKGIVTDIMVSSQYITANDRI LIIDDIIANGDAARGLIRIVERAGAELVGVGIAVEKAFQAGGRAIREQGIRTESLVTITS LEQGHIVFAD >gi|333605429|gb|AFDH01000085.1| GENE 35 39394 - 40050 605 218 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_4000 NR:ns ## KEGG: Pjdr2_4000 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 41 218 60 234 234 90 25.0 4e-17 MKNKLRRAAMIGLLISVLPAAAGCEAVHTFWGKETAGPSANQAEPNGNAQPSPSGAAGQT PAPDRSAAVSSNENTEGPVKAKPVVTPENTYRVNNPTLMGVTLGTPKDEVLNLFGKAKNM FVMDEDPQSVTVYEYGSFSVGFNVFDRLEFVQIQSADIDPGLGGLRLGQTADDAADVLGK PNNRTDYVLAYKAQNTVLKLDLDPDNQTIQSIKLFPAS >gi|333605429|gb|AFDH01000085.1| GENE 36 40102 - 40713 252 203 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|154175107|ref|YP_001408238.1| ribosomal protein L22 [Campylobacter curvus 525.92] # 5 200 8 198 199 101 27 1e-20 MKETIFELISNYGYTALYALLAAGIVGLPIPDETLMTFVGSLTMDTGPLNFTHSLIVSYL GTMTGMLISYTVGLRLGKPFLYKIGRWVRIKQERITRTELWFQKYGMWAVFFGYFVPGLR HFTCYLAGVSGISLWRYLLFAGSGALLWCCTFLSLGHFIGANFEAVLHGFHTYLGICIMW LAVAAAVGFLIYYLVRRKRKKNS >gi|333605429|gb|AFDH01000085.1| GENE 37 40823 - 41863 1241 346 aa, chain + ## HITS:1 COG:BS_ykvI KEGG:ns NR:ns ## COG: BS_ykvI COG3949 # Protein_GI_number: 16078435 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Bacillus subtilis # 10 340 9 337 347 204 38.0 2e-52 MVSKTWTQTAQVAFTYVGTVVGAGFASGQEILQFFTRYGAAASLTIALASVLFVWLGIKM MLMAHDVRAESYEDLNIALFGPKIGRWISLFTLFVLFGISSVMLAGGGTVFSEHLSLPFQ SGLLVTAVLSYAVITRGIGAIMAVNTVVVPVMATFSLILVLYTNKLPTSQAWLTLGTDHS PLSVWTAPLLYVGFNLATAQAVLVPLGAQIKDRRVLFRGALLGGLGIGLLLFAAHYALSA QMPGIRQFGIPMARIMDGMGTVIPFVYLLVIYGEIFTTYLSNTYGLTLQLQQRTGLGRRT VLLLLIALSYIVSLIGFKPLLSALYPLFGLVSSVWLAVMMWRNRSA >gi|333605429|gb|AFDH01000085.1| GENE 38 41801 - 42130 71 109 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MWKRDMRGAAPEQHAAKILQRITPLDYAQFALMAIGIIMLLADLVAVLRDAKAFPDYHIG YLLCGFLFVFLGMLMSFNRLFLTVRAWRSSGGAVSPHHHGQPHRADKAE >gi|333605429|gb|AFDH01000085.1| GENE 39 42251 - 42769 14 172 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSEKKPAKPGDREITYQVGRRKGRIRTAKAKAPAQDEKLPEPKREPFKSKKSASEREKAK TEAERAHSRSRQVEGMEAAKSSEYIEHPSNPSPAAVSGESANRAPDPSDPAVRTNPEEKA TPISGESSRLMELLWRSTPLPGWRAATMITWVLSAAAAACTLGVVSRLLTFG >gi|333605429|gb|AFDH01000085.1| GENE 40 42973 - 43947 477 324 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762640|ref|ZP_02169704.1| ribosomal protein L33 [Bacillus selenitireducens MLS10] # 4 319 5 316 323 188 34 1e-46 MSFFVGVDLGGTNIVCGLLDEEFNVLVKSKQPTEAAKGSDYVLEKIAVMVETMLREQNIA PGQLKAVGIGTPGFIDPVRGVCVFASNLRWNEVPVSDQLGARLGVPVFIDNDVRMYVYGE AMKGPGRGYEHVLGITLGTGMSAGLVNNGQLYYGGGFMAGEIGHIRVDDAETTPCGCGLV GCLETIASATGIVRQVKEALAAGRESILGQWFPGEEAASVTAADVSRAYDEGDRLAIEVM NHTGKLLGRGLSYAVTMYSPDALIIGGGASLAGERLFKPMREELQKSVYKGYWERLTIHP GTLIDDGGVIGSAAFAANRAAGIV >gi|333605429|gb|AFDH01000085.1| GENE 41 43966 - 44754 810 262 aa, chain - ## HITS:1 COG:YPO0831 KEGG:ns NR:ns ## COG: YPO0831 COG1349 # Protein_GI_number: 16121139 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Yersinia pestis # 12 260 7 254 258 154 37.0 1e-37 MNDTTPSKGDLRRQQIMTILKQQGRITIGEIIEHFQCSEATARRDLDLLEKKGEVVRTIG GALFEGLTAVRETSFAEKKQQLWLEKEAIARRAAGLIEEGDSVCLTGGTTTFLIARELKQ RQGITVVTNAVNIAMELADSEGLQVVVVGGVMRSKSFELSGPLAEKTIEHLNIEKLFLGV DGVSADKGITTFSELEAQTARLLISRTQHTIAVFDHTKVGKASLFSIAPLADVNVCVTDA RLEPDMEKVLEQHGITTLYANA >gi|333605429|gb|AFDH01000085.1| GENE 42 44779 - 45837 1225 352 aa, chain - ## HITS:1 COG:PH0510 KEGG:ns NR:ns ## COG: PH0510 COG2222 # Protein_GI_number: 14590413 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted phosphosugar isomerases # Organism: Pyrococcus horikoshii # 46 350 34 323 325 155 36.0 8e-38 MSNVQGQLTYTEISAQSAALQAAWDQLQKQSDWVNRYLGNDQYEEVVFIGSGSSYYQSIT MAATFRKWTGRSASAQPSSDIFLLRDATLPRGKKLLIVGVSRSGESHEVLLALDSVKNAA HIDTCGITCHETSKLFGMTECLLSPLGKEKSTVMSKSLSSMTFMMQAAIAMAAGGEAYLQ ELKTVLELDEELVKASDTSIKEWVSAHNFNKTVYLGLGALGGLALEACLKLKEMTYTWTE AYGTLEFRHGPKSIVDSDTLVCFLLSQSARDYELKVARELKEYGATILLLTAERGEDTEF ADLVLELGGAALSDEARSVLYLPAVQYNGYYNAMKRGLNPDDPRNLTQFVEI >gi|333605429|gb|AFDH01000085.1| GENE 43 45928 - 46797 1037 289 aa, chain + ## HITS:1 COG:CAC2952 KEGG:ns NR:ns ## COG: CAC2952 COG0191 # Protein_GI_number: 15896205 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose/tagatose bisphosphate aldolase # Organism: Clostridium acetobutylicum # 4 285 2 284 284 274 49.0 1e-73 MAHLISSTHLLQAARQNGYGITAFNVHTLEMLQAVVEAAEELQAPLILQTTVGTVKHLGP DYIVAAAAAAAKRSSVPIALHLDHCTDYELIVQCIREGYTSVMIDASMHPFEENVRQTQE VVKVARAAGVNVEAELGKVGGVEDDIVVADEDALLADPDECVRFVELTGVPTLAPAIGTA HGIYKGEPKIAFGKLEEIYRKVSLPLVLHGGSGIPEEQVKRCVSLGMAKMNVATELRIAF SDAIKKVFQANPDENDPRKYMVPAKAAVKELAQAKMRLTGCVGRAKDFI >gi|333605429|gb|AFDH01000085.1| GENE 44 46823 - 47752 983 309 aa, chain + ## HITS:1 COG:CAC2951 KEGG:ns NR:ns ## COG: CAC2951 COG1105 # Protein_GI_number: 15896204 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) # Organism: Clostridium acetobutylicum # 1 306 1 305 308 221 39.0 1e-57 MITTVTLNAAIDKTYRVKSFEMDWVSRVTDMIAVPGGKGINVARVARLLGEPVTAAGFVA GFNGQFIRSGLDTEGIPHDFTEVPGESRLCLTVLDADNGTQTELLEPGPAIAENSLLPLK EKVKALAGRSTHVCFSGSLPLGCPPSLYAELITLAREAGAEAVLDASGDALAAGLEAKPL LIKPNEHEIVRLLGRPASSDDDLAACIRELMQRGIRHVVVSLGARGALAGSSGRVRRVAI PAIRAVNPVGSGDAMVAGMVTALRRGSSDEDAARFGAACGSANALQMQAGVVTTEDVERI FRSVTVTDY >gi|333605429|gb|AFDH01000085.1| GENE 45 48124 - 49593 1283 489 aa, chain + ## HITS:1 COG:no KEGG:Tthe_0373 NR:ns ## KEGG: Tthe_0373 # Name: not_defined # Def: GerA spore germination protein # Organism: T.thermosaccharolyticum # Pathway: not_defined # 105 477 108 480 506 253 34.0 2e-65 MTDQNDSRKPDGRPTLPAAPTLNADQWDIPLAADTDGVIQLFQELLPTDEFQWILTDNGS SGCMFISTAIDKSLFQDDVAPRLSRWESQPDDWPTLFPTGTHIRKVSDTLNRMLQGDVIL LHNRLPHSAISFPAPFQKGRAIEPPKIERVILGPQESFVEDIDVNLGLLRRRLRDPNLIV HYYEVGERSKTTVAVVYLNDVAQQKWVDEIESKIEVIQTDSVVLMKELMEFISGPNLTPF PLYEKSELPARSALNLLKGRIGVLMDGSPFIAFLPNTVLTSFIGGEAVMHGSLIPTFVRL VRILAFVIAIYAPAVYLALVTVDSSILPTVFAISIAQDQAGIPYTSLFETLMMMIVMDVL NEGMTYVPGNVGSALNVVGSLIIGQAAAQAGLTSKFMIIVASISAVGAYIASYQISYAAR LWKYPFILAAGLFGFYGITVCSVLLLGHLASTKSLGLAYTSPFSPFSLKAIRMQFFRPAA QIEGTGPRL >gi|333605429|gb|AFDH01000085.1| GENE 46 49630 - 50718 1014 362 aa, chain + ## HITS:1 COG:no KEGG:Thebr_0187 NR:ns ## KEGG: Thebr_0187 # Name: not_defined # Def: spore germination protein # Organism: T.brockii # Pathway: not_defined # 6 268 8 269 369 76 28.0 2e-12 MTKPGISGLQWFVILAVTSIAMGPLRFPAYLSQQMDQHGWILLLLALAISLWNTYVAVRL SSRHPGAEIAEWSRLYLGKFLSAVYIGCIAIYFFIWGYLTFGEHWLLVSYLQLKYTPVYT IVLLVMPVVLYMVWKGTEAWARLFLLLGFVMAVWLLSINLPQLRNINVTNLLPLGNLGLP NLFGKNILTIFYLFKGFAVLYFLSPLIQSDKNLLRLSAAATVTAGAEVMLSYLLPIMVFG YETAKTFTFPYQESMETVPFLLLPFEKLSFLAPLFFVLVNIMILIVCVTCCSQALCRLFN TRRIKRMYVIVTVLMSLAFLRTLTVNEVDQLVYITALIFGAIFVLIPNYMWIVTLFRKEK TR >gi|333605429|gb|AFDH01000085.1| GENE 47 50715 - 51785 1054 356 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_3167 NR:ns ## KEGG: Pjdr2_3167 # Name: not_defined # Def: germination protein, Ger(X)C family # Organism: Paenibacillus # Pathway: not_defined # 1 351 2 372 379 86 25.0 1e-15 MRKWMLLLLLVTGAAALSGCLSISEIREQSFIVGMGIDRAENGELEISMMEIDMDGMKSG GNESSPGGKAPKYIIRNATGSNIPDCLRQIRTRLQKELSLDKVSFIMFSDKIAGEGIHPY MDFLVRSPNIDQTVHMFVTTDKVSELFRKDNGGLTNFSAKGYAFVPTFLASRLWQVNKAV MSPLQSIHLNRFNYENKELNFVGESFLRKDRLVYHLNGIESREFNVLVDRQGKEVILHAD AEKRNALQIKEVNRKTEVRRDRVTFTYSIQATILESKEQNPYRHADEIEKEGSRLWEKNF TKLLDGTKKQGLDILGIGEQFRMRGWDTANWEEQIKKLEVRVRVHLKILSPEGKRE >gi|333605429|gb|AFDH01000085.1| GENE 48 51863 - 55228 2722 1121 aa, chain - ## HITS:1 COG:MA2362 KEGG:ns NR:ns ## COG: MA2362 COG4717 # Protein_GI_number: 20091195 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Methanosarcina acetivorans str.C2A # 692 1119 862 1295 1300 162 30.0 3e-39 MIIREIRVRGFGSLQNRTYRFESPVTVLYGPNEAGKSTLLGFIRAVLFGFPTRAQAADRY EPDGGGSHGGALLLEDKQGRTVLIERYADHGGPGRPPAAGSVKVTLEGGEEGGEELLRHL LGGLSAELFRSLFAFGLGELQELRTLQGDDIGGYLYGAGFGVSGSAVVEAERKLAARADA LFRPRGRTQELNRSIRAYEELRSSRNRSADEISRYEEATAEWKRLGERLNELDAARTETA AELEWTRRCGKAFEPWLKLRRIQAEMAEIPEIPGFPLHAAERYEAIRQERDDFENERRQY EEESAALLRAVEALPVREELLEGAAELAVLEEEAGAYRSGQLAAASTETEKAQLNEALAA LLRQLDEQWTRQDLADFPVSVGMKEQIREARDSFAKWDGERALLDSELSRVFGRLEEQQS ELAERQLEWSEWLTLSGLREDAPGARTAAESGLLRRLSSDYAQWRLLKSEEEQRDRIREE EHRRQEEFEAWSDQRRSDSDRTRKKTAYAAGAIAVLLPAALLLSGQAAAAAAVFVVLAAG TAWLIFGSPDRARGNRRSRSPLKPEARTEGRGRARRGRAASSGDWLSAAAQPGEADHRAD GEDAGLEADKAALRQRLQQNLALLLSSRGAGSREAAAARANGSSDEATAPGRMPLPSWPE TLSWLDRELESWLTGTDLWAQHRSELERRRAKLEELKQSIQSLEKQQAAVSSRMRSLEER AASGQERWSVWLRERKLRPHLSPEAALESLQLIARGHDLLQRLAGCESKLAALQASSAAF EARTVRLLGEAEAADPLPGLRRRAERLAEQQGLLARRERLAAEAAEARRRETAAAQKARQ AAERLQALLSEAQAAGEEALLRQAALQERLAQLAAEARLLSGALDAHAGVARRERLDAAL SGADEGSLASREEELAGSLSGLEAEANRLRDRRGRLAGELEKLEGGSERGELLQRTEEQL AEARELGGKYAVLAMAALLVKRTRERCERERQPGVLRRASACFAAMTGGRFTQVVAPFGQ QRLYAVRSDGRQVDSSRLSRGTAEQLYLSMRFALVEEFTGGASLPLVFDDIFVNFDRERM EGALRIIGQFGGKRQVLLFTCHEHVRDAVTGISPAAGVLHV >gi|333605429|gb|AFDH01000085.1| GENE 49 55225 - 56670 1022 481 aa, chain - ## HITS:1 COG:MA2363 KEGG:ns NR:ns ## COG: MA2363 COG0420 # Protein_GI_number: 20091196 # Func_class: L Replication, recombination and repair # Function: DNA repair exonuclease # Organism: Methanosarcina acetivorans str.C2A # 4 326 22 344 443 275 44.0 1e-73 MKALKFLHAADLHLDSPFKGMNAVPERIRDVIRESTFGALNRLVRLAVREKVDFAVFSGD IYDAGDRSLRAQLRFRSALAELDRAGIPALVIHGNHDPLDGRGADLEWPAGAYVYPSDRV EKVRIVKEDRGLIAEVHGISYASAAVTENLALRFRSGDASVFQVALLHTNVDGRPGYDNY APCSKSDLMGRGIDYWALGHIHTREIVMDQKPAAVYPGNIQGRSIRECGPRGCYIVAVDE NGSPELDFHALDGVRWQQESLSIAGIGTEQELQESLQDLLARLREKAEGRPTVARIFLEG RGPLHLKLQAGSTLADLLRELRESELLALAGRSAAGYDRSGTGAGVEHTQAPHPADDNME ERAGSYPKAPPSGGVFRSAADVSFVWIESIEARTGQDIDFELLLREESFIGDLLRLAEEL AADEGKLREFADEALGSLLAQNGASRLFGGADGLLEDTGDWLEAARELAVDQLMPDGRRG K >gi|333605429|gb|AFDH01000085.1| GENE 50 56711 - 57835 1233 374 aa, chain - ## HITS:1 COG:BH1415_2 KEGG:ns NR:ns ## COG: BH1415_2 COG0438 # Protein_GI_number: 15613978 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Bacillus halodurans # 9 368 8 374 385 121 27.0 2e-27 MNILQALFFPPEQPGGVSSMVPYITEKFNKRGWDMELFSLPRRVRGKGTEPVTFNTFDWT RYAGNPIVDKYIQTYKDYVWWTKLRIRKSYDLIHAHHPIAALAIKEVFPDTTVIVTVHSS YEGELLLNGKIEEGGPEQLFLTSIYGEMEARLDQILTVSNSFKGYISEFIQDPDRIGVIP NGYDEKRFRPISHENEVAQLITVCRLVPAKGLETLLQACAMLKERGHPFVLHIIGDGPSR TELEELAKELNLYEEIIFYGYMLHPEEFMPFFDVFVLPSKAEAFGSVFAEAALCLLALVG TNVGGVAEQIENGRNGLLVEPGDAPALSQALEKVVVDPTYRYQLARAASEKAKKSYSLNR VIRQLRGVYERYGK >gi|333605429|gb|AFDH01000085.1| GENE 51 58115 - 59242 1161 375 aa, chain + ## HITS:1 COG:RP237 KEGG:ns NR:ns ## COG: RP237 COG3706 # Protein_GI_number: 15604107 # Func_class: T Signal transduction mechanisms # Function: Response regulator containing a CheY-like receiver domain and a GGDEF domain # Organism: Rickettsia prowazekii # 229 373 291 450 450 132 45.0 1e-30 MWNDPIETWGPETASSMMLVILTLMVFISGRLYYTRRKKGYLSMTVSLILMLVHNLLRLY WQASGQLQGMSGFADALLQAVTFVLINLGVYQLYNPTRRRHYLYFYGLIAVALGVSAFHF YPPSGGSPEQAALLADLPLELYMFVLIFLCAYTITPLIGQQGKFQAVMTLYFAKQTAHMV NLYLFQGEQKWLMLAEWFIPVIYATILFFLLFDRVVELMQAIYQSSITDGLTKVYNRKYF DKRVSQYIRLNLNVSVLFSDIDNFKKLNDTKGHHMGDEMLKQVASIMRQEADESGIVGRY GGEELVILLTDPDVKPAELAERIRKRIEEETIVTVSMGFSTYKKGLTGDKLIKQADEAMY KAKTTGKNKVVKFGA >gi|333605429|gb|AFDH01000085.1| GENE 52 59332 - 59538 236 68 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|167461941|ref|ZP_02327030.1| ## NR: gi|167461941|ref|ZP_02327030.1| hypothetical protein Plarl_05195 [Paenibacillus larvae subsp. larvae BRL-230010] # 1 68 1 68 68 74 63.0 2e-12 MRIIAKSEEFIRRRMTLGLTQRELARQTGLSHAYISLLERSMKSVGPGAAKRLSIVLGKQ VEELFHIQ >gi|333605429|gb|AFDH01000085.1| GENE 53 59723 - 60103 425 126 aa, chain + ## HITS:1 COG:BH3549 KEGG:ns NR:ns ## COG: BH3549 COG1396 # Protein_GI_number: 15616111 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus halodurans # 7 71 10 74 154 69 52.0 1e-12 MYFYDKLKDLRKLKGYTIRELADRSGVSAAYISQLENGNRNIPSPDVLMKLSEGLNIPYA ELMKIAGYLDEPERGGDKPKAPVNLRRFLHDNELIFDGIELTEQDKEWVERMLSALFWKE RNSRNG >gi|333605429|gb|AFDH01000085.1| GENE 54 60305 - 60685 443 126 aa, chain + ## HITS:1 COG:BH3549 KEGG:ns NR:ns ## COG: BH3549 COG1396 # Protein_GI_number: 15616111 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus halodurans # 7 71 10 74 154 69 52.0 1e-12 MYFYDKLKDLRKLKGYTIRELADRSGVSAAYISQLENGNRNIPSPDVLMKLSEGLNIPYA ELMKIAGYLDEPESGGDKLKAPVNLRRFLHDNELIFDGIELTEQDKEWVERMLSALFWKE RNSRNE >gi|333605429|gb|AFDH01000085.1| GENE 55 60797 - 61066 370 89 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSVLQNELTHLIFLAEVVIASRKKEVMEDTLQCLLYIIKSLPEVEVPDSVAEQIAHLTER IEEKLRQENERIQEIQGNLGRLAKPNSIA >gi|333605429|gb|AFDH01000085.1| GENE 56 61425 - 62057 766 210 aa, chain + ## HITS:1 COG:BH2236 KEGG:ns NR:ns ## COG: BH2236 COG0778 # Protein_GI_number: 15614799 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Bacillus halodurans # 10 210 13 213 213 271 66.0 9e-73 MTQQLFPETLKVIAERHSVKSYDPDFVFPEEHKELILNAANQAPSSWNLQHWKFLVIDDP AAKQRLLPIASNQKQVVESSFVVAVLGDLQANLNAETIYGAAVESGFLTQEIKDTLVSQI NGAYASGGSIPRDEAIRNASFASMQLMLAAKALGYDTCPMGGFNPAALVQEFNVPERYIP TLLISVGKAAKPAYASGRFPLEQVIVKNSF >gi|333605429|gb|AFDH01000085.1| GENE 57 62104 - 62415 362 103 aa, chain + ## HITS:1 COG:BH3098 KEGG:ns NR:ns ## COG: BH3098 COG0526 # Protein_GI_number: 15615660 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Bacillus halodurans # 1 102 3 103 104 111 57.0 4e-25 MLNVSDQTFQETLDNNNLVLVDFWAPWCGPCKMQSPILDQLTEEAGEAVTIAKINVDDNP ETASKFGVMSIPTLKLFKNGGEVKTMVGVQSLQTLKELVNQNQ >gi|333605429|gb|AFDH01000085.1| GENE 58 62551 - 63588 1286 345 aa, chain - ## HITS:1 COG:no KEGG:Btus_0938 NR:ns ## KEGG: Btus_0938 # Name: not_defined # Def: hypothetical protein # Organism: B.tusciae # Pathway: not_defined # 3 157 2 161 292 68 30.0 6e-10 MAQLVLRPDLKTAGGEVTEILVDGRFAGIISLVYREGDRMTGGIQLEDAVLSPAGKREVD AFVRNHIQWLVDAMNIRECDVVLTYGSYDHIIGTPLLPDESPAVDYADDETTAEWVGDES VYGDYDEDELDDISMEEDAYDAEPDYELVLLEDSRGRVEYQLFDPGSRLVAEASCRIYGS EAVCMLDWVFDPLEEEMELASNLIVADFQDEETENFLFHSRFDGEIVDSIEISLEEADEL SELDSGEEEYSVILARDDGDTLTYEIYEQEYGGIPIGTATIDVSEDQLTGFIDFRQTDDS RQRQEIARLLMEELDKEQDYDSLHLSMLYRNKLIDELLFENVTIQ >gi|333605429|gb|AFDH01000085.1| GENE 59 63815 - 65335 1854 506 aa, chain - ## HITS:1 COG:lin0980 KEGG:ns NR:ns ## COG: lin0980 COG0477 # Protein_GI_number: 16800049 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 7 487 4 485 491 374 43.0 1e-103 MARSGNTDKTKVLLAIMVVTFLSSIEGTIVSTAIPRIVGDLGGLDLMSWVISIYLLTTAV STPIFGKLSDLYGRKKIFMIGTGLFLIGSTLCGIAQSMEMMIFFRAVQGIGAGAILPVTM IIVGDIYSFEERAKIQGWISGIWGLSGILGPLAGGLMVDYVSWRWIFYFNIPFGIISMLL ISAYLHENLEKTKRPIDYPGIVTFTVSMTALIYALLSGGVQYAWGSPVILGLLVVSVVFL FIFIAVEKRSPEPMLPLDLFKDRLLTLINSSGFILSAILVAVTIYLPLWVQSVNGGGATG SGFALIPLSICWTVGAALAGRGFVRLGVRSAVLIGVGGITAGSVALALMTSATPGWALEV YTALFGIGFGFAFTAYTITMQSAVGWKLRGAAMSSHTFIRTLGQTLGIAVFGMLYNTSLH TYQQAHPDQVGGIDLNKALDAHGRSAFSPETMAGIRELFAFSLSRIFWSLLVLAAIGIVL TLLLPKRFKVEEEPELAAEPEPSRQS >gi|333605429|gb|AFDH01000085.1| GENE 60 65393 - 66208 933 271 aa, chain - ## HITS:1 COG:BS_yxeH KEGG:ns NR:ns ## COG: BS_yxeH COG0561 # Protein_GI_number: 16081006 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Bacillus subtilis # 3 265 2 268 270 126 34.0 4e-29 MTYKLIALDVDGTLLNDDYLLTERTRETVRRVHEQGSYIVLCTGRGPASAIPVLEELGLE GTVITHNGGATVQSPGLELIHQYSFRVSQIAAMIAYCREHEVHFDVCAPFDMYLERLTEV EQAMYKKFFVTPHLVADVTALTVPLVKFTLYSADPAVMDTVERDWSLSRLYGDLRMIRSG DHFIDVMHADATKGNALRSLCASLDVRPDEVLAIGNYFNDLEMISFAGLGIAMANSPAGV LEQADQITASNNEDGVAQALETHVLQTVRRD >gi|333605429|gb|AFDH01000085.1| GENE 61 66321 - 67076 750 251 aa, chain - ## HITS:1 COG:lin2436 KEGG:ns NR:ns ## COG: lin2436 COG1187 # Protein_GI_number: 16801498 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases # Organism: Listeria innocua # 1 236 6 233 233 265 58.0 9e-71 MLAHLGYGSRSDLKKTVKNGLIEVNGIRVKDSGMQVDPEQDEITVSGEKIVYREFVYLLL NKPQGVVSATEDNRDRTVVDLLGEAYAPFDVFPVGRLDKDTEGLLLLTNDGKLAHNLLSP RKHVPKTYYAKVEGLAGEADKQAFEAGVELDDGYVTMPAQLRVLTCDTTADPPRSEIELT IQEGKFHQVKRMFQAVGKRVVYLKRVSMGPLQLDPALGLGEYRELTREELELLQGKPSLD SGPDVDNDLHK >gi|333605429|gb|AFDH01000085.1| GENE 62 67173 - 67292 78 39 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNKSPLASEIRGQGMLGGLPFMRIGVSVEAFVSSIPGGI >gi|333605429|gb|AFDH01000085.1| GENE 63 67464 - 67973 605 169 aa, chain + ## HITS:1 COG:BH1942 KEGG:ns NR:ns ## COG: BH1942 COG0526 # Protein_GI_number: 15614505 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Bacillus halodurans # 1 151 1 147 156 142 48.0 3e-34 MKKLAIYLGIIVVLFAAIFVVTKSSNKGNDEAANKLYGVSASKLKPATQKLLEDPNYQNL IKPEELDKRIANKESFFLYYYGADCPHCKVTTPVLVPLQQKLGIDVKQFNLLEFQDGWKK YNIEFTPTLVYYKDGVEVERMVGGVPENGGTEGNTPAKFEEFFLKHNGK >gi|333605429|gb|AFDH01000085.1| GENE 64 68039 - 68662 625 207 aa, chain - ## HITS:1 COG:no KEGG:Tthe_0143 NR:ns ## KEGG: Tthe_0143 # Name: not_defined # Def: hypothetical protein # Organism: T.thermosaccharolyticum # Pathway: not_defined # 1 174 1 169 217 68 29.0 1e-10 MAALLSKDFRVMRKELLWMAVYVVFFAITFSNSRMGGVVVQLVPSIMLLFISANHDVKNR NFILLGSLPVRRSDIVRARYVSVLLFGVLGAGIGFIVSTATSMIQGTGGASSFSWGASGL LGAMLLVYAAIYLPLHYWLGDKYLQVISVIMMILLFASTSMLGFIVGATDRWGLPSPAAA AVIAAAGAAAFFVSYLISLGIMKKKDF >gi|333605429|gb|AFDH01000085.1| GENE 65 68646 - 69521 1031 291 aa, chain - ## HITS:1 COG:BH0652 KEGG:ns NR:ns ## COG: BH0652 COG1131 # Protein_GI_number: 15613215 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Bacillus halodurans # 2 284 3 284 288 298 52.0 1e-80 MNAVEFKHISKAYSNFNIQDLSFAVPKGYITGLIGPNGAGKSTLIKILLHLAIPEQGRVF IEGMEMPQREKEIKERIGFVSDESHFYEHLTVRQTGRLLASFYRNWNEAQFQTYLERFEL PAGKKISDLSKGMKMKFGLAAALSHGAKLLVMDEPTAGLDPVFRRELLDLLADLMQDEQH TILFSTHITTDLDRVADYIAFMNRGKLVFSESKENVQERYAIVKGGTELLDADIRKQFVS VRETSVGFEGLVYNRPEAEKLFGGYAVIEPATLEDIMVYTVKGGYSHGGTA >gi|333605429|gb|AFDH01000085.1| GENE 66 69518 - 69904 394 128 aa, chain - ## HITS:1 COG:BH0651 KEGG:ns NR:ns ## COG: BH0651 COG1725 # Protein_GI_number: 15613214 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus halodurans # 1 123 1 123 123 108 56.0 3e-24 MNIILSQSSGEPIYEQIRQQIQRQILQGELLPGESLPSIRQLAKDLQISVITTKRAYEEL EKEGLIDSVVGKGSFVSGLNREYIREQQLKQFEAKLSEAVREARQLGITVDETIETVKAL YEEEEDIR >gi|333605429|gb|AFDH01000085.1| GENE 67 70057 - 71415 1195 452 aa, chain - ## HITS:1 COG:BS_ycxD KEGG:ns NR:ns ## COG: BS_ycxD COG1167 # Protein_GI_number: 16077425 # Func_class: K Transcription; E Amino acid transport and metabolism # Function: Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs # Organism: Bacillus subtilis # 1 446 1 444 444 516 57.0 1e-146 MHKYEGILTDLEQQIADRRYKEGSKLPSIRQLSESYGVNKSTVIRAMEELESRHLVYSIA KSGYYVVQSSPDTAPDSPEVIDFAVSAPDPAFFPYLDFQHCMNKAIDTYKNDLFVYGTPQ GLPALLMMMQKLLADYQVFTRVSSLFVVSGVQQALAILAGLPFPNGKTKVLIEQPGYHLF IEQLVTHGVPVMGIRRSREGIDLDELERIFRTEPIKFFYTIPRFHAPLGCSYRTDVKKKI AALARKYDVYVVEDDYLADLEPDGKADPVHAYDEGKRVIYLKSFSKIMFPGLRIGIAVIP GSLVDLFSRYKRIADIDSSMISQGALEIYLKSGMFERHKHKIKAAYATRSLLLRQMLAEH GPLAGGAVQGAMYSEELSPVHTHLVLSPSVSQPELTKRLRKKSVVIEPIDKHYLPGFPRD NYLKLNVSQVGDEQIRRGVRLLMEELGRYGDR >gi|333605429|gb|AFDH01000085.1| GENE 68 71553 - 72500 793 315 aa, chain + ## HITS:1 COG:BS_ycxC KEGG:ns NR:ns ## COG: BS_ycxC COG0697 # Protein_GI_number: 16077424 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Bacillus subtilis # 8 295 7 294 312 228 52.0 9e-60 MKAAAPLTKAYLSAVLYALIIGFSFIFVKTALVSTGPFDLLAHRFTISLAALLVFLALSK TRLNIRKRDYLAILPMAVLYPVLFFAFQTFGLVQASASEAGIIQAAAPVFTMMLASVVLK ERTGLRQNLFIALSVAGGVYIFAMKGLDFRTMNGAGLFLILLSALSSAGYSVLARKLSRN YTPLDLTFVSLLFGFIAFNGFAVIRRIVQGTLPLYFEPFGDLSFTVSVLFLGVLSSLASS FLSNYALSKMEAFKISIFSQLATIVTMAAGVIILHEKLAYFHLIGAALMIAGVVGVCLPS SPRKISRQPERRLDA >gi|333605429|gb|AFDH01000085.1| GENE 69 72719 - 73201 467 160 aa, chain - ## HITS:1 COG:PA4794 KEGG:ns NR:ns ## COG: PA4794 COG0454 # Protein_GI_number: 15599988 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Pseudomonas aeruginosa # 7 160 6 158 160 110 37.0 9e-25 MADYQSRPLSPDDLDVICGLPQHAGELFYMYPKGAYPLTPEQIRETLKTRLCPTVITAEG GGIAAYANLYDCVREKECWLGNVIVAPEYRGKGASSYLIRTMMDKAKRELDVPFLNLVCH NTNTPALLLYAKLGFCPFDVSEKSGPDGKRLAGIHMRASL >gi|333605429|gb|AFDH01000085.1| GENE 70 73355 - 73765 416 136 aa, chain - ## HITS:1 COG:alr4066 KEGG:ns NR:ns ## COG: alr4066 COG1547 # Protein_GI_number: 17231558 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Nostoc sp. PCC 7120 # 14 103 15 105 130 73 45.0 1e-13 MRPYDPLYLAFLYEFNVSRDYYECHEVMETLWLEEGRKPFYQGLLQIAVGLYHHLNANVS GAVKLMESGIAKLQGYPDRLLGIDVALLLRDAEAYLVKLRNNGVRPFEPYPLEIRIVDED LAGQVRQIQGERRTES >gi|333605429|gb|AFDH01000085.1| GENE 71 73767 - 74570 971 267 aa, chain - ## HITS:1 COG:CAC0642 KEGG:ns NR:ns ## COG: CAC0642 COG2357 # Protein_GI_number: 15893930 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 5 263 5 262 262 244 50.0 1e-64 MDGRDWKKFLFPYEQTVEELKIKFKTLRAELKNREEYSPIEFVTGRVKKISSILDKAKKL NVSMDDLETGIEDIAGIRIMCQFVEDIETLRELIHQRKDMKVLYEKDYIANKKESGYRSF HMIIEYPVQTSLGMKKVLGEIQLRTLAMNFWATIEHSLNYKYKESMLPEEVRTRLSRAAE AAYLLDQEMSNIRGEIVEAQKLFEDNSNLVTVILNCIQVLYFYHRVREAVQFQMRFNEIF EKDDTRAMRELQEEIQEAIKRAKKGAR >gi|333605429|gb|AFDH01000085.1| GENE 72 74592 - 75695 974 367 aa, chain - ## HITS:1 COG:DR0501 KEGG:ns NR:ns ## COG: DR0501 COG0167 # Protein_GI_number: 15805528 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotate dehydrogenase # Organism: Deinococcus radiodurans # 5 361 3 367 369 377 56.0 1e-104 MVYKKIAKPVLFRMDAEKAHHLTINGLKTAAKIPGMSSVIGAAWGFGHAPELHSTLWGIA FPNPVGLAAGLDKNAQAVEGFSRMGFGFMEVGTVTPKPQSGNDKPRLFRLPEDEALINRM GFNNIGAEAMAQNLSRLGSRPIPVAVNIGKNKTTPNEQAEEDYRSCIRTLYGHGDFFVVN ISSPNTPDLRNLQHGNDLQRLLHAVVGEMKNQHERTGGAAKPVLVKIAPDLTDTELENTI AVIGGSGVSGIIVSNTTLGRDGLSHPNRDQAGGLSGRPLTSRSTELISRVYRMTEGRIPI IGSGGIFTAQDAYDKIRAGASLVEVYTALIYEGPGLLKKLNEGLSTLLKKDGFTHISEAI GADQRRL >gi|333605429|gb|AFDH01000085.1| GENE 73 76091 - 77608 1388 505 aa, chain - ## HITS:1 COG:BS_ykuD KEGG:ns NR:ns ## COG: BS_ykuD COG1376 # Protein_GI_number: 16078468 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 341 450 55 162 164 80 41.0 5e-15 MSTEKPDEKLARFLRHNPIEDRVYLKEYVRDHPDQRMAWYLLGREYAARGDRGKAAYCYA QSGEIYEAFEKRKITVDWSALDSSVPWPQELKTAAKRSRRRKAALTAALLALIALLPSPA GPDAGDGRPGGSAGASADLPAAEEGPRVYLTADGASSAGKETSASGALERMLLRDRPAGG EAVLLSAQGADGPGGGWIAWHRPLKPLLSVASGGPGEAAAIAYFDAAACNCRPDDPGRFA EPAGAWRQRQEQLLVLRSGLEAYRAASGKLPERPEELLRPYPDNVMSGLTPYMREAFPLV REAAAAGANGQAAAGTGGADTAPGAKPSAASAAAEEALSEPLAILIDTKLHRLALVSGRT VVRSYEVGLGGARTPLGEFAVSEKVRNPKGRTKGEFGTRGMTLSDTDYAIHGTRHPSSIG KDESLGCIRMRQEDVEELFDMAPKGTKVTIGSGLLPAGLVGDGSGDSGASKGSGAPGAGF GPKGAFKLPSEVQETNPGKVYRWLD >gi|333605429|gb|AFDH01000085.1| GENE 74 77819 - 78055 298 78 aa, chain - ## HITS:1 COG:BH0209 KEGG:ns NR:ns ## COG: BH0209 COG1141 # Protein_GI_number: 15612772 # Func_class: C Energy production and conversion # Function: Ferredoxin # Organism: Bacillus halodurans # 1 77 1 75 82 80 59.0 8e-16 MAKYTWVEKDTCIACGACGATAPDIYDYDDEGIAEVIYENDGNHGVTEIPEDLYDDLQDA QDGCPTDSIKVADTPFNM >gi|333605429|gb|AFDH01000085.1| GENE 75 78215 - 79495 1207 426 aa, chain - ## HITS:1 COG:BS_yqjH KEGG:ns NR:ns ## COG: BS_yqjH COG0389 # Protein_GI_number: 16079444 # Func_class: L Replication, recombination and repair # Function: Nucleotidyltransferase/DNA polymerase involved in DNA repair # Organism: Bacillus subtilis # 7 418 2 406 414 385 49.0 1e-107 MAQEGYPKNGRVILHIDMNAFYCSVHEVVEPELYRGKPIAVSGSVEQRKGIIVTSSYPAR ARGVKTGMLVRQAMRLCPELVLIKPNFDLYRQFSRGFRRIVYDYSPMVETMSIDECYVDI TGSKQFGTPLQIAEEIQTRIREELGLPCSVGVAPNKLLAKMASDMKKPNGLFVLRLRDVP KVLWDRPCGELYGIGRKTAEKLQKLQIHTIGQLAAADEGLLRKSFGISGPALKQAANGIS RSEVNPEREPNKSVGHTTTLPYNYTDRKEVFRVFLNLADQVGRRLRHQKLMASTVQITIR DPDMKTITRNVTLPVPTDHHEDLYKAACELFERHWAPEKPIRLLGITGQNLTPKEEAAIQ LDLFSYEQQPKKDKLSEIMDALRDKFGEDAVLTAGMIGDNPSALIRNRKRRGTSLQKDPD GDSFPL >gi|333605429|gb|AFDH01000085.1| GENE 76 79753 - 81369 1716 538 aa, chain + ## HITS:1 COG:aq_356 KEGG:ns NR:ns ## COG: aq_356 COG0119 # Protein_GI_number: 15605865 # Func_class: E Amino acid transport and metabolism # Function: Isopropylmalate/homocitrate/citramalate synthases # Organism: Aquifex aeolicus # 1 518 1 520 528 607 56.0 1e-173 MSDSIKIFDTTLRDGTQGEGISLSVEDKLKIAQKLDELGVHYIEGGWPGSNGKDIEFFNR VQELNLKHAKVTAFGSTRRKNTKAEEDPNLTTLVASGVKVATIFGKSWDFHVHTAIQTTL EENLAMIFDSVRYLKSCGLEVIYDGEHFFDGYKNNPDYALQTIRQAQEAGADWIVLCDTN GGSMPEEIFEIVSEVKKQITTPVGIHAHNDCELGVANSLAAVRAGARQVQGTMNGYGERC GNANLCSVIPNLQLKLGFACISDEQLESLGPVARYVSEIANMHMPMNQPYVGSAAFAHKG GIHVSAILKHASTYEHIVPEKVGNKQRVLVSELAGQSNLVSKAAELGLNLEQQDGKAKEI ISRIKDLEHEGYQFEGADASLELMMREASGELQEPFVLESFKIFVEKSADRPVSSEAFVK VNVHGESMYTAAEGDGPVNALDNALRKALLPFYPDIHRMHLSDYKVRVLDDKGATASKVR VLIESRNYENEWNTVGVSSNIIEASWHALVDSFRYALIGKSCIERESLDPRPVGLVNH >gi|333605429|gb|AFDH01000085.1| GENE 77 81503 - 82039 282 178 aa, chain - ## HITS:1 COG:BS_yneN KEGG:ns NR:ns ## COG: BS_yneN COG0526 # Protein_GI_number: 16078864 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Bacillus subtilis # 26 171 21 167 170 116 37.0 2e-26 MKRNAAILAIVLLVAAAIFVQIGKKNEKQTAAPTQTGPRPGMFVPSFSLPDLDGKPYQVG GARDKPLILNFWASWCGPCKMEVPDLIDLQTKYGDKVDLVAINVTSQDDEQKARAFAKEY GINFPVLLDEPGKVSESFKFLAIPTSFLVDKNGVVQEVVNLLPKAEWEKKIKALIKGR >gi|333605429|gb|AFDH01000085.1| GENE 78 82223 - 83524 1274 433 aa, chain + ## HITS:1 COG:BS_yitG KEGG:ns NR:ns ## COG: BS_yitG COG0477 # Protein_GI_number: 16078162 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus subtilis # 42 426 10 394 422 369 54.0 1e-102 MEKSKSRGLDIIFESDQDDDYQFTAEQTAEGGKKGGGKSRLLEFMAIATVPLVLVLGNSM LVPILPQLETELGITKFQSSLVITLFSITAGLIIPISGYLSDRFTRKSVIIPSLIIYGAA GVLAAFGAIWKSYTILIIARAIQGIGAAGTAPIAMALVGDLYKGGTESKALGLTEASNGF GKVLSPIIGSLLALIVWYMPFFAFPIFCLLALLAMMFLIHEPKTKKEPTELKPYLHKIGT ILKKKGRWLITSFFAGSLALFILFGVLFYLSNILEEPPYHIDGVKKGFVLAIPLLGMVIT SYTTGALIKKNGTVMRWLINIGLLVMTLSLASTIFALQNLYLFIGLLTLSAIGTGLLLPC LNTMITGSVEKSERGMITSIYNSLRFIGVAFGPPIFGWLMDKSDRLIFITVSSLAGLTLV LVFFLVKPQGKIS >gi|333605429|gb|AFDH01000085.1| GENE 79 83564 - 84229 115 221 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|167465014|ref|ZP_02330103.1| ## NR: gi|167465014|ref|ZP_02330103.1| hypothetical protein Plarl_21056 [Paenibacillus larvae subsp. larvae BRL-230010] hypothetical protein PL1_1824 [Paenibacillus larvae subsp. larvae B-3650] hypothetical protein PL1_1824 [Paenibacillus larvae subsp. larvae B-3650] # 7 132 2 122 155 74 34.0 4e-12 MINAKRLTEINVSRSLYTEWLARFSSFPDEEACGFVYGRIRKETAYVSSFVWVPNVSACP TRSFRISPSDIMHHLGGGKAPRDRPARSSLAGPVLLGLFHSHPRTAALPSCEDISVLRLW PELPSFWIVSLVRSAPETAVYAWAEPQESGAALGPSESEDSAGKAVKTEDTGQPGPVGPS ETYTRTDRTSQRTVSAPSSNRSYQVKSLPRLRKIPLCIEAL >gi|333605429|gb|AFDH01000085.1| GENE 80 84318 - 85046 829 242 aa, chain - ## HITS:1 COG:BH3832 KEGG:ns NR:ns ## COG: BH3832 COG0847 # Protein_GI_number: 15616394 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases # Organism: Bacillus halodurans # 19 240 38 261 265 172 42.0 5e-43 MKESGPDGGMWRLYKMGGLTPAITSMFNPRNAQQMAFIRQLLKDQRRHSLLDTRLHNLKV VVFDLETTGFSSTADEIISIGAVSMAGDKLEDKTFYTLVNPNRPIPPHIEELTGIRTEET AEAPDLITALREFFEFVGARVLLAHGSAHDKAFLNAALWKTSKVSLSHRVLDSMMVAKWL MPRRKDYTLDSLLELYEIPVLRRHHALDDSLMTGELWKKLLEEIGEMGVDTLGDLYALLS KA >gi|333605429|gb|AFDH01000085.1| GENE 81 85067 - 86194 973 375 aa, chain - ## HITS:1 COG:BH3833 KEGG:ns NR:ns ## COG: BH3833 COG2905 # Protein_GI_number: 15616395 # Func_class: T Signal transduction mechanisms # Function: Predicted signal-transduction protein containing cAMP-binding and CBS domains # Organism: Bacillus halodurans # 22 355 6 331 336 170 35.0 3e-42 MEPIVGSAWQLLRARINRAAGSDELALIRADMQDLFRRELGEEAAALLYEELNFTHDAMI RKMISLAEKRLEAEGAGEPPLPYAFLLMGSGGREEQTPWSDQDSGLVYENPPEGAEAAAD GYFSKLAQRIRQGLELAGYPPCTGRVLAENQLWRRSESGWKDQLNGWFAEPVWENARYLL IAADLRCVYGSEALADRIKQAFHESIALNRGLLLPLLANTLHHKVSLGLLGRLVTERYGP YAGGVDIKYGLYIPLVNAVRLLALENGISVSSTLKRIDALIDRGAVTVEFGTACREVFLH SLKMRLNTPFYRENGHFATAGILPAGMLTGKCRAELKSGLKFGKQLQRQVIRQVRGSVKK GRDASSAKLREHTGQ >gi|333605429|gb|AFDH01000085.1| GENE 82 86233 - 87660 1541 475 aa, chain - ## HITS:1 COG:BH3834 KEGG:ns NR:ns ## COG: BH3834 COG0004 # Protein_GI_number: 15616396 # Func_class: P Inorganic ion transport and metabolism # Function: Ammonia permease # Organism: Bacillus halodurans # 32 452 5 413 421 429 59.0 1e-120 MIKKTLIGLALLSMVFPTLAFAEAPTPEQLQAAINSVWVLVAAMLVVFMQAGFALLEAGS TRMKNAGHVAGKTILTFGICAIAFWAFGFGLAFGDGAGLFNNNLFGLSGFFMDGVNADAF VSLSASDVPITIKFLFQLAFAGVSLAIAWGGFAERAKLPVYFIFGLLFTVVIYPIVAHWV WGGGWLSKIGMQDFAGSTVVHLQGATAALVATILLKPRIGKFNKDGSPNKIPGHNQVLSV LGVIIIWIGWFGFNPGSTLSAMGDGFFGYIALTTNLAAAAGGVAAMAVSWIYFGKSDIPS MLNGVLAALVAITASCAFVTPLASIAIGAIAGGVTFFTAIWFEKKGIDDPVYAFSVHGIA GIWGTLSTGFFATPELAKTVNVGGAGLFYGGGFHQLWVQFIGVAGALVFVLVISFIVLYL IKVTTGLRVTEEEEIMGLDLAEHGTYGYPEQMNHAIEAHTSAKQSNEGGRSVPVS >gi|333605429|gb|AFDH01000085.1| GENE 83 88001 - 88399 569 132 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_2140 NR:ns ## KEGG: Pjdr2_2140 # Name: not_defined # Def: transcriptional regulator, MerR family # Organism: Paenibacillus # Pathway: not_defined # 1 131 15 145 146 140 57.0 2e-32 MAGVSPRTIDYYTKLGLIHPEKRSDTNYRLYSDETLLRLKRIEEMKKEKYTLEEIRTTML KLDKAAHDEHVTDKLTSYQVLLGQLQKEIKELDPMIQQLKPNQLKKIYNLITQPTAACVE ALLYLLGKGPFT >gi|333605429|gb|AFDH01000085.1| GENE 84 88440 - 89126 660 228 aa, chain + ## HITS:1 COG:BS_yugP KEGG:ns NR:ns ## COG: BS_yugP COG2738 # Protein_GI_number: 16080183 # Func_class: R General function prediction only # Function: Predicted Zn-dependent protease # Organism: Bacillus subtilis # 8 222 5 218 225 244 64.0 6e-65 MFFHPMDFLILIAFGLSMWASFRVRGTFNRWSQVPVQSGMTGYEAARRMLDAEGLYDVPI EPVPGALTDHYDPISRTVRLSEPVYYESTISAVSVACHEVGHAIQHQVHYPMLVARHKMF PVVNFASGVAPLLLIAGLIFQQFDILLLLGIVFFSAAVLFQLVTLPVEFNASNRARELMI AGGFITNEEEQGVAKVLNAAALTYVAAALISLLELVKYVMIFNSRSND >gi|333605429|gb|AFDH01000085.1| GENE 85 89269 - 90204 258 311 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149913192|ref|ZP_01901726.1| 50S ribosomal protein L35 [Roseobacter sp. AzwK-3b] # 5 251 1 245 305 103 26 2e-21 MEESVELRQLQYFVKVAKKQHMTQAAEELRVAQSAVSRQIRHLEEELGVRLFVQKGRNLQ LTPAGSLFLSRAEHILADLERAVGEVREFLDPEAGEIRVGFPHSVSVSILPAFISCFKKE HPNVKFRLKQGTYTSLIRDVTEGEIDLAIISPCPETHELVKGEVMLTEELLAVLPPNHAL ADCKSIRLEQLKEEPFVMFGEQYSLRPIVMNACLKAGFVPKIEFEGDETDTIRGLVAAGM GVSLLPELALRYTTHIEPCVVKVDPKVTRTVGVIRRRDEKLPLVTELFSRFLMEFQPSAD PGRPMGRLNGS >gi|333605429|gb|AFDH01000085.1| GENE 86 90375 - 90840 519 155 aa, chain + ## HITS:1 COG:BS_ytgI KEGG:ns NR:ns ## COG: BS_ytgI COG2077 # Protein_GI_number: 16080001 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peroxiredoxin # Organism: Bacillus subtilis # 10 154 5 148 167 192 66.0 3e-49 MSQERKGAATFKGNPITLVGPELKAGDAAPDFKLNKDLLNEVSLSDYAGKVKLISVVPSI DTGVCDAQTRRFNEEAAKLGDNVAVLTVSVDLPFAQARWCGAAGIDQVVLLSDYKAKSFG QAYGVLIQELQLDMRSIFVIDANDKIQYVEYLGEM Prediction of potential genes in microbial genomes Time: Sun Jul 17 09:42:21 2011 Seq name: gi|333605427|gb|AFDH01000086.1| Paenibacillus sp. HGF7 contig00250, whole genome shotgun sequence Length of sequence - 664 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 629 644 ## COG1020 Non-ribosomal peptide synthetase modules and related proteins Predicted protein(s) >gi|333605427|gb|AFDH01000086.1| GENE 1 2 - 629 644 209 aa, chain - ## HITS:1 COG:BS_ppsC_2 KEGG:ns NR:ns ## COG: BS_ppsC_2 COG1020 # Protein_GI_number: 16078893 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Non-ribosomal peptide synthetase modules and related proteins # Organism: Bacillus subtilis # 1 208 170 378 1505 239 57.0 2e-63 MWQQSEAGSERVRAQEAYWLERLKGELPVLDLPADRTRPAVFSYTGGVVRFTLGAERTSG LKRLALRTGATLYMVLLAAYSTLLSKYSGQEEVIVGTPVAGRPHAELERVMGMFVNTLAL RTYPSADKPFEAYVREVKELALEAYAHQDYPFEELVEKLNVRRDMSRNPLFDTMFAWQGE DGGVPELAGLKASAEEADYRSAKFDLTLD Prediction of potential genes in microbial genomes Time: Sun Jul 17 09:42:24 2011 Seq name: gi|333605418|gb|AFDH01000087.1| Paenibacillus sp. HGF7 contig00117, whole genome shotgun sequence Length of sequence - 5402 bp Number of predicted genes - 7, with homology - 7 Number of transcription units - 4, operones - 3 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 7/0.000 - CDS 2 - 362 344 ## COG0350 Methylated DNA-protein cysteine methyltransferase 2 1 Op 2 . - CDS 427 - 996 310 ## COG2169 Adenosine deaminase - Prom 1017 - 1076 5.4 + Prom 1129 - 1188 4.2 3 2 Tu 1 . + CDS 1223 - 1804 742 ## COG1611 Predicted Rossmann fold nucleotide-binding protein + Term 1850 - 1905 8.3 + Prom 1944 - 2003 6.2 4 3 Op 1 3/0.000 + CDS 2068 - 2733 851 ## COG0274 Deoxyribose-phosphate aldolase 5 3 Op 2 . + CDS 2761 - 3162 400 ## COG0295 Cytidine deaminase + Prom 3164 - 3223 2.5 6 4 Op 1 2/0.000 + CDS 3285 - 4463 1446 ## COG1972 Nucleoside permease 7 4 Op 2 . + CDS 4490 - 5402 1028 ## COG1015 Phosphopentomutase Predicted protein(s) >gi|333605418|gb|AFDH01000087.1| GENE 1 2 - 362 344 120 aa, chain - ## HITS:1 COG:BS_adaB KEGG:ns NR:ns ## COG: BS_adaB COG0350 # Protein_GI_number: 16077250 # Func_class: L Replication, recombination and repair # Function: Methylated DNA-protein cysteine methyltransferase # Organism: Bacillus subtilis # 10 119 8 114 179 105 41.0 3e-23 MNTLSATTEIYWAALVHPLFRNKPLYIAATDRGLCRITWPTESLDTLKSWAARQIPGAVL IEDEERMAGYLLQLKEYLEGTRQQFDVPLDMRGTAFQTSVWKALAEIPFGETRSYSDIAA >gi|333605418|gb|AFDH01000087.1| GENE 2 427 - 996 310 189 aa, chain - ## HITS:1 COG:BH0394 KEGG:ns NR:ns ## COG: BH0394 COG2169 # Protein_GI_number: 15612957 # Func_class: F Nucleotide transport and metabolism # Function: Adenosine deaminase # Organism: Bacillus halodurans # 8 183 3 178 181 150 43.0 1e-36 MNEDAIFKSVYETILSRDTRHDGQYYVGITSTGIFCRPSCRSRTPKPENVRVYDSIEGAL AAGFRPCKRCKPENPSPHGPDAELAETVLGLIRTRYGENLTLHGLASELNMSPYHLQRTF KRTTGISPSRQLLLTRMEEAKRRLSRSEQAIGEIAAAVGFRSASHFSAAFQKAAGCTPNE YREQNARNS >gi|333605418|gb|AFDH01000087.1| GENE 3 1223 - 1804 742 193 aa, chain + ## HITS:1 COG:BH3084 KEGG:ns NR:ns ## COG: BH3084 COG1611 # Protein_GI_number: 15615646 # Func_class: R General function prediction only # Function: Predicted Rossmann fold nucleotide-binding protein # Organism: Bacillus halodurans # 3 187 2 186 187 285 72.0 4e-77 MKRIAVFCGSSNGASEVYREGAARLGRELAERGLTLVYGGASVGLMGAVADAVLEAGGEV IGVIPKMLENREISHHGLTELIVVESMHERKAKMAELADGFMALPGGPGTLEEFVEIYTW GQLGLHRKPFGLVNLNHYYDPLVALFDRMNQEQFMQDKYRSMVLVNEDPAKLLEQFASYK APEVKTYIKNDQT >gi|333605418|gb|AFDH01000087.1| GENE 4 2068 - 2733 851 221 aa, chain + ## HITS:1 COG:lin2103 KEGG:ns NR:ns ## COG: lin2103 COG0274 # Protein_GI_number: 16801169 # Func_class: F Nucleotide transport and metabolism # Function: Deoxyribose-phosphate aldolase # Organism: Listeria innocua # 1 214 1 214 223 271 75.0 8e-73 MSIAGMIDHTLLRADATKAEITKLTEEAKKYEFASVCVNPTWVAYAAEQLSGSPVKVCTV IGFPLGATTSAVKAFETKDAIANGAGEVDMVINIGALKAGDDTLVESDIKAVVDAAAGKA LVKVIIETSLLTDEEKVRASELAVKAGADFVKTSTGFSTGGATPADVALMRKTVGPDVGV KASGGVRSLEDMNGMIEAGATRIGASSGVKIMEGGQSTSSY >gi|333605418|gb|AFDH01000087.1| GENE 5 2761 - 3162 400 133 aa, chain + ## HITS:1 COG:BS_cdd KEGG:ns NR:ns ## COG: BS_cdd COG0295 # Protein_GI_number: 16079584 # Func_class: F Nucleotide transport and metabolism # Function: Cytidine deaminase # Organism: Bacillus subtilis # 2 130 3 130 136 160 59.0 7e-40 MKDQLIQEAIEARKQAYVPYSGFQVGAAVLTGGKVYRGCNVENASYGLTNCAERTAIFKA VSEGEGGHKLEAIAIVADTEGPVSPCGACRQVIAEFSDRNTKIYLTNLHGNTEEWTIDRL LPGAFQADDMEKK >gi|333605418|gb|AFDH01000087.1| GENE 6 3285 - 4463 1446 392 aa, chain + ## HITS:1 COG:BS_nupC KEGG:ns NR:ns ## COG: BS_nupC COG1972 # Protein_GI_number: 16080992 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside permease # Organism: Bacillus subtilis # 1 390 1 391 393 484 73.0 1e-136 MKYLVAILGVLVVFGLTYAASNNRHKIRYRPLFVMIALQVVLAFALLNTSAGEFLIRGFA SVFESLLAYASEGINFVFGGIANDKTSPFFLNVLLPIVFISALIGILQYTKILPFIVKYI GLVLSKVNGMGKLESYNAVASAILGQSEVFISVKKQIGLLPKHRLYTLCASAMSTVSMSI VGAYMQMIEPKFVVTALVLNLFGGFIISSILNPYVVTKEEDILEVQEEEKQSFFEMLGEY ILDGFKVAIIVAAMLIGFVALIALINGVFNGIFGISFQSLLGYIFAPFAFIMGVPWAEAV EAGSIMATKMVSNEFVAMLDLAKHTTMSPRTVGIVSVFLVSFANFSSIGIIAGAVKGLHE KQGNVVARFGLKLLYGATLVSVLSATIAGLFL >gi|333605418|gb|AFDH01000087.1| GENE 7 4490 - 5402 1028 304 aa, chain + ## HITS:1 COG:lin2068 KEGG:ns NR:ns ## COG: lin2068 COG1015 # Protein_GI_number: 16801134 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphopentomutase # Organism: Listeria innocua # 4 302 5 303 394 498 81.0 1e-141 MTTFKRIHLIVLDSVGIGEAPDAAKFDDFDVDTLGHIARERGGLNMPNMAKLGLSNIRPI EGVPAADKPLAYYTKMQEASNGKDTMTGHWEIMGLNIETPFRVFPDGFPDELIGRIEEKT GRKVIGNKPASGTEIIDELGEEHVKTGALIIYTSADSVLQIAAHEDVVPLKELYEICEFC REITLEDPYMLGRIIARPFVGEAGSFKRTANRHDYALKPFGRTTMNELKDKGFDVIALGK ISDIYDGEGVTKAVRTVSNMDGMDKLVDTLGESFTGLSFLNLVDFDALFGHRRDPQGYGQ ALEE Prediction of potential genes in microbial genomes Time: Sun Jul 17 09:42:38 2011 Seq name: gi|333605378|gb|AFDH01000088.1| Paenibacillus sp. HGF7 contig00060, whole genome shotgun sequence Length of sequence - 54350 bp Number of predicted genes - 38, with homology - 35 Number of transcription units - 25, operones - 6 average op.length - 3.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 212 - 244 5.4 1 1 Op 1 . - CDS 346 - 516 69 ## GYMC10_3377 protein of unknown function DUF6 transmembrane - Prom 574 - 633 2.8 - Term 558 - 591 0.0 2 1 Op 2 . - CDS 662 - 2008 854 ## COG5498 Predicted glycosyl hydrolase - Prom 2166 - 2225 4.3 3 2 Tu 1 . - CDS 2363 - 2830 65 ## COG1846 Transcriptional regulators - Prom 2914 - 2973 5.8 + Prom 2819 - 2878 6.5 4 3 Op 1 . + CDS 3071 - 4492 338 ## COG0477 Permeases of the major facilitator superfamily 5 3 Op 2 . + CDS 4583 - 5056 154 ## STAUR_3909 monooxygenase 6 3 Op 3 . + CDS 5041 - 5247 104 ## STAUR_3909 monooxygenase 7 4 Tu 1 . + CDS 5485 - 5703 221 ## STAUR_3909 monooxygenase + Term 5752 - 5797 6.3 - Term 5743 - 5782 2.7 8 5 Tu 1 . - CDS 5904 - 6164 82 ## GYMC10_4881 transcriptional regulator, TetR family - Prom 6187 - 6246 2.8 + Prom 6565 - 6624 5.8 9 6 Tu 1 . + CDS 6669 - 7874 672 ## COG2814 Arabinose efflux permease + Term 7982 - 8008 -1.0 10 7 Op 1 . - CDS 8477 - 9214 238 ## PROTEIN SUPPORTED gi|163797523|ref|ZP_02191474.1| 50S ribosomal protein L9 11 7 Op 2 . - CDS 9293 - 9547 200 ## Atu0859 hypothetical protein - Prom 9679 - 9738 3.5 + Prom 9676 - 9735 4.0 12 8 Tu 1 . + CDS 9770 - 10690 354 ## COG2207 AraC-type DNA-binding domain-containing proteins + Term 10844 - 10894 0.3 - Term 10832 - 10882 1.1 13 9 Tu 1 . - CDS 10892 - 11266 326 ## - Prom 11425 - 11484 7.1 14 10 Op 1 2/0.400 - CDS 11573 - 11866 326 ## COG3666 Transposase and inactivated derivatives 15 10 Op 2 . - CDS 11885 - 12094 321 ## COG3666 Transposase and inactivated derivatives - Term 12118 - 12169 4.2 16 11 Tu 1 . - CDS 12228 - 13553 484 ## COG1228 Imidazolonepropionase and related amidohydrolases - Prom 13573 - 13632 6.6 + Prom 13597 - 13656 7.1 17 12 Tu 1 . + CDS 13696 - 14007 117 ## COG1846 Transcriptional regulators + Term 14174 - 14215 1.0 + Prom 14287 - 14346 3.9 18 13 Tu 1 . + CDS 14386 - 15447 906 ## COG0463 Glycosyltransferases involved in cell wall biogenesis + Prom 16028 - 16087 3.9 19 14 Op 1 . + CDS 16114 - 16497 385 ## COG0853 Aspartate 1-decarboxylase 20 14 Op 2 . + CDS 16526 - 28678 8379 ## COG1020 Non-ribosomal peptide synthetase modules and related proteins 21 14 Op 3 . + CDS 28747 - 29619 740 ## CLI_A0011 CAAX amino protease family protein 22 14 Op 4 . + CDS 29624 - 30433 682 ## gi|315647101|ref|ZP_07900214.1| caax amino protease family protein 23 14 Op 5 . + CDS 30430 - 31233 777 ## gi|315647100|ref|ZP_07900213.1| hypothetical protein PVOR_17184 24 14 Op 6 . + CDS 31248 - 41504 7211 ## COG1020 Non-ribosomal peptide synthetase modules and related proteins 25 14 Op 7 . + CDS 41538 - 42509 1051 ## Ccel_2391 hypothetical protein + Prom 42511 - 42570 1.5 26 15 Op 1 . + CDS 42598 - 43266 433 ## COG3208 Predicted thioesterase involved in non-ribosomal peptide biosynthesis 27 15 Op 2 . + CDS 43288 - 44568 656 ## COG0331 (acyl-carrier-protein) S-malonyltransferase 28 15 Op 3 . + CDS 44583 - 45971 1101 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases + Term 46118 - 46155 3.0 + Prom 46082 - 46141 6.2 29 16 Tu 1 . + CDS 46189 - 46338 147 ## 30 17 Tu 1 . - CDS 46829 - 47314 218 ## Bcer98_0376 TetR family transcriptional regulator - Prom 47344 - 47403 4.7 31 18 Tu 1 . - CDS 47456 - 48193 168 ## COG1266 Predicted metal-dependent membrane protease - Prom 48352 - 48411 4.0 - Term 48461 - 48488 0.1 32 19 Tu 1 . - CDS 48653 - 49198 167 ## COG1396 Predicted transcriptional regulators - Prom 49302 - 49361 7.9 + Prom 49237 - 49296 6.2 33 20 Tu 1 . + CDS 49343 - 50155 -69 ## COG3048 D-serine dehydratase + Prom 50315 - 50374 4.1 34 21 Tu 1 . + CDS 50455 - 50724 93 ## COG3048 D-serine dehydratase + Prom 50794 - 50853 4.2 35 22 Tu 1 . + CDS 50896 - 51384 297 ## BBR47_27280 hypothetical protein + Prom 51411 - 51470 5.0 36 23 Tu 1 . + CDS 51529 - 51711 70 ## + Term 51765 - 51809 8.4 - Term 52065 - 52116 6.0 37 24 Tu 1 . - CDS 52137 - 52454 109 ## COG0451 Nucleoside-diphosphate-sugar epimerases + Prom 53305 - 53364 7.8 38 25 Tu 1 . + CDS 53445 - 53948 162 ## COG1309 Transcriptional regulator + Term 54099 - 54143 4.1 Predicted protein(s) >gi|333605378|gb|AFDH01000088.1| GENE 1 346 - 516 69 56 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_3377 NR:ns ## KEGG: GYMC10_3377 # Name: not_defined # Def: protein of unknown function DUF6 transmembrane # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 54 209 262 299 84 92.0 2e-15 MGIIPYGLALGIFGSVLPPLLYSIGMPHVGSGLGTILTSSELPVVVIMSSLVLGFF >gi|333605378|gb|AFDH01000088.1| GENE 2 662 - 2008 854 448 aa, chain - ## HITS:1 COG:BH0236 KEGG:ns NR:ns ## COG: BH0236 COG5498 # Protein_GI_number: 15612799 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted glycosyl hydrolase # Organism: Bacillus halodurans # 29 113 936 1019 1020 68 41.0 2e-11 MRKGMSYLLILSLILTCFSIFATKAEAADYTRGVELSGSAATIWFKSAVNSSWVDVHYKV NGGVQQNFRMAYNASKSRYEKAISNIFAGSVITYSFTYNNGTPAYDTEVFTYTAGTTPPA SSSGSIYDILPSSIPSPASGAVSVKVMNGTNGAYSDQQIYWGVIGINPANNKWSYLDLNG NLIPISTALNDAPGHLTKNGINYANIYHKVSDAPWATLPKITGGRMFLSAGTPLYIKTYN DGFAGPDLNNPTDPNRDNYLDFAEFTIDAAGYHGNTTRVDGFGFPIQHRLVNKSGSFDRT TGELESETRSGIFTKFQAEVPAAFKSLATVQAPYRIVAPIHGSFAQGGANANYFGGYAPY NTQDIFRCDGALTNAATCAAINRHVYTTGDWNNVSNYYKAAPANYYAKFWHDHSINRLAY GFPYDDVNGQSSYLEVSDPKGLIIRVGW >gi|333605378|gb|AFDH01000088.1| GENE 3 2363 - 2830 65 155 aa, chain - ## HITS:1 COG:BH4044 KEGG:ns NR:ns ## COG: BH4044 COG1846 # Protein_GI_number: 15616606 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus halodurans # 11 145 11 145 157 123 51.0 1e-28 MGLSKENAVLAVEVLDLLFRATRHIQQEYEMKLESLSLPFQLSGPRLRLLLMVWRAEKIR MNELASKLGVKPRTVTELVDALERDGVLHRTPDPNDRRATLLHLTEEALNQISRVRSVQM QISDEILQKFSAEQRTQLHALLSKIFEGMEFDFVY >gi|333605378|gb|AFDH01000088.1| GENE 4 3071 - 4492 338 473 aa, chain + ## HITS:1 COG:BS_ycnB KEGG:ns NR:ns ## COG: BS_ycnB COG0477 # Protein_GI_number: 16077452 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus subtilis # 9 462 10 460 472 390 52.0 1e-108 MSEKSSLNFNRTLLACIFLIGTFVTILNQTVLFTALPEIMIDFGISAGTGQWLTTAYLMA NGILLPVTAFFISKYTTRQLMIVAMSLFIIGTTLAAVSPNFTLLLIARIIQACGASITML LMQTVFFIIFPREKRGTAMGLVGLVIAFAPAIGPTLSGLIMNHFSWRYIFFMVLPVAVIV LILTLVYMKNVTEVNKRQKIDIPSVFLSTVGFGALLYGISIAGSGSALSAAVCCIVGATG LTLLILKGLRSEKPMLEFRVFKSYAFVLSTIAVVISFICLMGPQTMLPIYIQNIRGMTAL ESGLILLPGAVVNGIVSMIAGKIYDRIGGKYLGVIGYILIAVSVIPFIFMHAQTALWMIV LFYALMIVGISMIMMPMTTEGLNALPDHLINHGTAMINTFRQVGGSIGTALLITIYTEVS SHAVESGRFNEVAQSQVHGVNYAFIGVFVFVIIGLVGSSLLKSRKGQVALSSK >gi|333605378|gb|AFDH01000088.1| GENE 5 4583 - 5056 154 157 aa, chain + ## HITS:1 COG:no KEGG:STAUR_3909 NR:ns ## KEGG: STAUR_3909 # Name: not_defined # Def: monooxygenase # Organism: S.aurantiaca # Pathway: not_defined # 1 136 12 147 379 204 76.0 1e-51 MGGLTLARVLHVHGIPATIYEAEPSAEARAQGGQLDIHEYNGQHALQAAGLFDEFLGLIH KGGQAARVLDTHGKVLLDKPDDGNRGRPEVLRGDLRRLLLDSLPPETIQWGKELVGAAAL GDGRHELNFADGSTVSVQNSSWVWTALGRRSARWFPA >gi|333605378|gb|AFDH01000088.1| GENE 6 5041 - 5247 104 68 aa, chain + ## HITS:1 COG:no KEGG:STAUR_3909 NR:ns ## KEGG: STAUR_3909 # Name: not_defined # Def: monooxygenase # Organism: S.aurantiaca # Pathway: not_defined # 1 68 164 231 379 92 64.0 7e-18 MVSGVKPEYVGTSYIETYLYGVDERHPAAAKTVGGGSLYALVPGKGILVHLEPGNILHTY VQLNCTAE >gi|333605378|gb|AFDH01000088.1| GENE 7 5485 - 5703 221 72 aa, chain + ## HITS:1 COG:no KEGG:STAUR_3909 NR:ns ## KEGG: STAUR_3909 # Name: not_defined # Def: monooxygenase # Organism: S.aurantiaca # Pathway: not_defined # 1 61 311 370 379 84 68.0 2e-15 MFDGAELGKAIAAYPDDVKAALSAYEEALFPRSEAAATMTHQNHEVFCFDDRAPFGLIDI LVQKKWFLRELK >gi|333605378|gb|AFDH01000088.1| GENE 8 5904 - 6164 82 86 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_4881 NR:ns ## KEGG: GYMC10_4881 # Name: not_defined # Def: transcriptional regulator, TetR family # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 78 127 204 208 112 62.0 6e-24 MVAKERQKVRGWLKDCLLRAVENEELPPTADISVLVALFDTFLQGISTQARDGVPYERID AAITQLMRIWDVLSTKPDNSGDTLIS >gi|333605378|gb|AFDH01000088.1| GENE 9 6669 - 7874 672 401 aa, chain + ## HITS:1 COG:XF1728 KEGG:ns NR:ns ## COG: XF1728 COG2814 # Protein_GI_number: 15838329 # Func_class: G Carbohydrate transport and metabolism # Function: Arabinose efflux permease # Organism: Xylella fastidiosa 9a5c # 20 397 65 441 447 296 51.0 4e-80 MSRHSLSTGTAQAAGMPARLPWMALLALAMTGFICILTETIPAGLLPLIGDGLHITTAMA GQLVTLYAIGSLVAAIPFAMLTGGVRRRPLLLAIIAGFLVFNTITALSTSYALTLIARFF AGVAAGAAWGMIAGYARRMVPDALKGRALAVAMVGTPIALTFGVPIGTLLGDLIGWRAVF VLMSFLALVLIGWVLWGVPDYPGQPTNQRMNVKQVFVMPGMRPILIVVLTWMLAHNILYT YIAPFLERSGLAGHVDLVLLVFGLAALVSIWIVGILIDRILRMLVLISLSGFTLVAIALW IGGTSVTVVYSAVALWGFTFGGAATLLQSAQANASGEEGVDIAMPINTTVWNLAIACGGI VGGSLLELFGVQSFPGALLILLIVALMVAWSARKHGFPGKQ >gi|333605378|gb|AFDH01000088.1| GENE 10 8477 - 9214 238 245 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163797523|ref|ZP_02191474.1| 50S ribosomal protein L9 [alpha proteobacterium BAL199] # 9 242 7 242 259 96 32 3e-19 MSEINGKVVVITGASSGIGEATAKLLASRGAHVVIGARRVEKLEALASLIEAEGGSALYQ QLDVTNIGQMQAIIRLAQNRFGRVDVVVNNAGVMPLSPLEALKIDEWNRMIDVNIRGVLH GIAAGLPIMKEQQSGHMINVASIGAYAVTPTAAVYCATKYAVRAITEGLRQEVGSNIRVT LVSPGVTESELAESISDEEAKEMMKTYRRDALPASAIARAITYAIEQPAAVEVNELVVRP TAQFA >gi|333605378|gb|AFDH01000088.1| GENE 11 9293 - 9547 200 84 aa, chain - ## HITS:1 COG:no KEGG:Atu0859 NR:ns ## KEGG: Atu0859 # Name: not_defined # Def: hypothetical protein # Organism: A.tumefaciens # Pathway: not_defined # 3 84 35 116 116 124 71.0 1e-27 MSTQNVKPHPYVGMWVTKDGYIRHELLPNGRYDEARGKRKSAYQGRYTVVGDHIEYVDDT GFRADGDFRDSVLYHAGMVLYRER >gi|333605378|gb|AFDH01000088.1| GENE 12 9770 - 10690 354 306 aa, chain + ## HITS:1 COG:PA2047 KEGG:ns NR:ns ## COG: PA2047 COG2207 # Protein_GI_number: 15597243 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Pseudomonas aeruginosa # 5 298 35 328 329 257 45.0 2e-68 MDEWFEKQRRELLQIIEKNTPEDGAHDTQVPGLRLIRASRLSEPVYSVYEPSLCIVAQGS KMVMLGQEVYQYDPSSYLTASVHLPITGQVMEASRETPYLSLQILFDMNQILDVIQVFGE AKRARSEVGRGLKVSRMNDTLLDAVLRLVKLVETPQDIPVLAPYVIREIIYRVLQRENNA SLKQFAAIGSHAQRIAGVVERLNRDFAQPLRVDELAAEAHMSASVLYDYFKEVTGMSPIQ FQKHIRLQEARRLIFSGSISAAEAAFQVGYESPSHFSREYARMFGLPPVRDVSRLRSSFK EITVSE >gi|333605378|gb|AFDH01000088.1| GENE 13 10892 - 11266 326 124 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKRKIASIAFVLVLLFSFASVGLAASSGPGTGNNTWAPVQAHGNIYIEGNFINDGQISLG VNFKLYRVTPTEDVLVGSNWTNTIVAGQSARLKIPLASNQPDGQYRLVLDSPGDFTVIAY LGYN >gi|333605378|gb|AFDH01000088.1| GENE 14 11573 - 11866 326 97 aa, chain - ## HITS:1 COG:SPy2013 KEGG:ns NR:ns ## COG: SPy2013 COG3666 # Protein_GI_number: 15675797 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Streptococcus pyogenes M1 GAS # 1 97 78 174 401 99 45.0 2e-21 MRQTIKEIVTNIAYRWFIGYDFTQPIPHFTTFGKNYVRRFRDTDIFESIFARILEEAMQH GFVEPDILFIDATHVKASANKNKITKTLVHDLSPYLA >gi|333605378|gb|AFDH01000088.1| GENE 15 11885 - 12094 321 69 aa, chain - ## HITS:1 COG:SPy2013 KEGG:ns NR:ns ## COG: SPy2013 COG3666 # Protein_GI_number: 15675797 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Streptococcus pyogenes M1 GAS # 1 69 1 70 401 84 57.0 5e-17 MLSKNNSEGRFQVSVHSLDELVPKNHLVRQIEKAIDFSFIYELVQDTYSSQTGRPSVDPV VLIKIVLIQ >gi|333605378|gb|AFDH01000088.1| GENE 16 12228 - 13553 484 441 aa, chain - ## HITS:1 COG:BH2935 KEGG:ns NR:ns ## COG: BH2935 COG1228 # Protein_GI_number: 15615497 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Imidazolonepropionase and related amidohydrolases # Organism: Bacillus halodurans # 21 436 5 385 394 81 25.0 3e-15 MGGIQMEKIIQNAALEQVTAITNVRIFDGVQIIAPRHVVIKGESIISVGGDLPTDATIID GENATLLPGLIDAHVHTSIGGLRDALKFGVTTELEMNGDFTKRGREIQLKNVNDVADVRS AGTAITAPGGHPDELLPDGDEIPEFVLKELEKLSEEDREAMLAAYAHDHEEIPQVTTVEE AIKHVHTQVENGADYIKIMIEEGTVMGAPGLPVLSDEILKTAVTEAHKFDKLVIAHVLTA RSSQEAIDFGVDGLGHLFIDRPEYTSELVKSIADSGAFVTPCLVLNSSIIGNPASELAND PRVHSKLSPDWIDILNSSFNTFPQGNLENSFKNVMDLHRAGVDILVGTDVAPVPVPNLGG LAHGASVHHEMQLLVKAGFTPIEALQSATSKPARCFGLHDRGRITEGARADLILVNGDPT TTISDTLSIKSVWFNGSQQLG >gi|333605378|gb|AFDH01000088.1| GENE 17 13696 - 14007 117 103 aa, chain + ## HITS:1 COG:CAC2486 KEGG:ns NR:ns ## COG: CAC2486 COG1846 # Protein_GI_number: 15895751 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Clostridium acetobutylicum # 6 93 9 96 145 105 65.0 2e-23 MQSRKDTPYLDLFQIIGLKLKKRADESIKELGLSAQQGKVIDYIYENQNNQLIQKDLADR FHLRGASITSMLQGLEQKGFIERKIPANNERQKIYMYCQKRLN >gi|333605378|gb|AFDH01000088.1| GENE 18 14386 - 15447 906 353 aa, chain + ## HITS:1 COG:PH0430 KEGG:ns NR:ns ## COG: PH0430 COG0463 # Protein_GI_number: 14590346 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Pyrococcus horikoshii # 4 108 5 109 334 112 49.0 8e-25 MEQLISIVMPTYNRAQIISGAIESILRQSYANWELIVVDDRSTDHTEETIREWTRKDVRI RYVCNEREKGPGGARNTGMLAAQGEYLAFLDSDDEWYPGHLTDSMRTLALTKADISFALW VERHGDITSYNFDNEVERYWLHSMRTKFETWNDGETIVFEKGLFEAFLSHTRNFFQLNTM VFRRELLDEVGLINEHFYLGEDTTYLLRFFDKYRIALQTKPHSVYRESPDSLYFFCDRWQ LDPDTLHLNEEIYKKIEGLSFKSIKVREHIRDLVAQSDSVSKKAKQLSYIDIGIASKYYT LSYLNRCDRKKALRYCRQSLHYKVSIFNLFLFVKLLLSSKSGNVFLRKALNIW >gi|333605378|gb|AFDH01000088.1| GENE 19 16114 - 16497 385 127 aa, chain + ## HITS:1 COG:BH1689 KEGG:ns NR:ns ## COG: BH1689 COG0853 # Protein_GI_number: 15614252 # Func_class: H Coenzyme transport and metabolism # Function: Aspartate 1-decarboxylase # Organism: Bacillus halodurans # 1 115 1 115 127 147 66.0 4e-36 MFREMHKSKIHRAVVTEANLNYVGSITIAQDILDASNILENEKVQVVNINNGARLETYVI TGPRGSGMVCLNGAAARLVQPGDRVIIISYAMMEESVARTYRPHVVIMDEHNRIVTEDYQ ELHSTTV >gi|333605378|gb|AFDH01000088.1| GENE 20 16526 - 28678 8379 4050 aa, chain + ## HITS:1 COG:BS_ppsD_2 KEGG:ns NR:ns ## COG: BS_ppsD_2 COG1020 # Protein_GI_number: 16078892 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Non-ribosomal peptide synthetase modules and related proteins # Organism: Bacillus subtilis # 2794 3827 1 1018 1030 797 41.0 0 MRTIRNLSGVLLARKENDAGILFCERGGEHYLSYGQLLASAGRTLHLLRERGLGPGNFAV MQTEDNERFILLFWACVLGGIVPVPVTAARTDEGRKKLIQVCKQLEAPTLLCDEELWPGI QGYALKHGEAEALAQLQSGSVPIAEVLAAAADAGRPEAEPYDAAETDTAFIQFTSGSTGD PKGVVLTHGNLLSNMRAIIHGAQSTERDSSLSWLPLTHDMGLIGFHLTPLFCGMNQLHLP TSTFVLHPMKWLELTHKHRVTCLSSPNFGYVHFLQHWKPEGAAAWDLSCVRLIFNGAEPI SAAHCRDFLEAMKPYGLKGNCIFPVYGLAEASLAVTFPGTEDHLNTVKLERQSLTIGQPI QIAAHVDHTAIEIVELGFPVQECEVRICDEAGNPSAAGSVGLIHIKGRNVTRGYYKRPDV NKQTISPDGWLNTGDLGFLLEGRLYVTGRMKDVIFVNGQNVYPHDLEALISGLKGAEIGK TAIAAVQDATTKRDAIAVFIQHRGKAGGFVPLIAEVKKLLNGSAGLDVAFVVPVRRIPKT TSGKIQRYVLAEALREGEFAEVLAELTELEAAAAPVRCDAEGGDALRGDVGLKPATETEE RIMSIWREVLKKDYIGRKDGFLEQGGNSLKAAYAAARLQETFGVELTLTELFLHDTVSSL AALLEQKALEGEGTAAVVAPPVAKAEDRTVYPATSAQKRLFILEELNPGLLNYHLPFTAQ VKGPLDIERFRAAWRALIERHPALRTSFYREEDNVMQRIEQEVEPSLAVVDGSGWTAAEL ALRQHSFLQPFRLEQAPLLRLELVRLEHESSVLLLDMHHIITDGTSMGILMSDLTRFYEG NAPEPLSIHGGDMALWEEAGRDGGWLERQKLYWREIFRDGVPSPSLPSPRPRPQTPSYRG AIERFELEPELTGSLRALARREGVTLYTVLLSIYYALLSKYTGESDIVVGTAAARRVRPE MQSVVGMFVNMVPIRLRGQSGLRFDQWLKQVHGEALAAIGNGDVPYEEIAELANVKREYG RNPLFDSVFTLQNMELPEWRSKDVVYTPQAMDSGSAKFDLTWECADTGAGIAFTLEYALD LYDEWAAAQLARHYVALARAVATQPHAALGELDPVDAEERERLLRLCRSSATPPQELSLH RLFERQAVETPQQIAVEMGERAYTYSELNERANRFARALARRGVAPGAKVALLLLRSPDM IVAILAVLKAGAVYVPIDPQYPEERILFMLQDTETQAIVTAAATMEMGTRLAGDRTDVID MDELDTGWASEYGHDLDIDGSADDLAYIMYTSGSTGKPKGIMTSHRNVSRIAVQTDYVSI SKNDALLQLSNYAFDGSTFDLYGALLNGAKLTLVSEEEVADVVRLTELIEDRGITIFFVT TALFNTLVDHGLESLRGLRHILFGGERASVPHIRKALRALGPGVLLHVYGPTETTVFATC YPITETWDGQGTATLPIGTPIARSETLVLNEQGRLQPDWVPGELWIAGEGVASGYVNLPE QTASKFRPHPFREGETVYGTGDLVRRLPDGNLEFLDRIDSQVKLRGYRIELGEIESRLLD CAGVKEAFVALIENDGAPYLCAYIVAEQTEGRASVRSQLTGKLPAFMIPAAFVQLEKLPL NANGKVDKKRLPAPERAISYEAPATETEIIVARLWQEVLHAEQVGALDHFFEHGGHSLKA AALTSAIYKQCRVRMPLQEIFKLPTVREQASWIDRAAKEAYEPVADAPKAASYPLSPPQR RMFLAESMADIGLTYHIPLALKLSGAVGETRIEPALRKLIERHEPLRTSYHWIDGVPAQI VHDSAAFVLQTAELAETALPECLSEFFRPLELAAAPLLAACYCRPESEGAEAYLLLNIHH IAADGISVKLLLEELTALIDGAELAPLALHYKDYAVWQERQSGSERARASRAFWTEQLAE PPAPLDMPLDWLRGDRQTFAGDTYTFHIPAALAARLKETAASAGASMNSLLFAAYALLLK GTTHQSEFAIGSLAAGRTHPDTARMIGMFNQFLPIRMRVADELPILAFVGETHGRLLAAY EHGDVSFEQMMEAARYPHDPSRNPLFDTMLIVHNQFEDEKLAARGDGWSMEPLPVSHGTS KLDFKLDLYSDGEGGLRAELEYNTGLFHKDTMERLAARLLYILEQTAASPDLICGDVAMA TPAEEAAFAAWNDTGHSYPAEKTIHGWFAESARRWPNRTAVRSAEGSLTYGELNDRAERM AAVLRGKGVAVETIVPIAAQRSLSMMIAIMAVLKAGGAYLPIDPEHPPERIRGILEDSGA KLLLTGAKWIHTLPAFLGETLDLDALAAAAASELPKGEEETDLTPQAGPEHLAYVIYTSG STGKPKGVMVEHRAAINRLNWMQTAYPLNERDVILQKTPITFDVSVWELFWWSFAGASLY LLEPSGEKEPSVMLRAIEEQAVTVMHFVPSMLGVFLPYAADSGRGGELCSLRYVFASGEA LKPAHVAGFYSLMERGGGRCRLINLYGPTEATVDVSYYDCPDAGAGTIPIGKPIHNIRLY IVDERMRPQPIGVSGELCIAGAGLARGYRNRPDLTEQSFVPNPFAAGEKLYRTGDRARWL PDGNIEYLGRFDHQVKLRGLRIECGEIEHALLLQAEVRDAVVTAVTDHAGEPALCAYLVT VDGETPEEASLRAVLKEFLPEYMIPSYFVAMGAFPLSPSGKADRSRLPQPRFAEPAACGE APATPTEQRLAELWREVLGLASSEPNDPAAIGREAHFFQLGGHSLRAAQLAGLIEQRYGA AFAMKDVFDVPLLREMAARIDNAAPKRATVIARAESRPFYPLSLAQNRLFVLQQLYPGST AYNLPLALNLTGKLDQDRLREAIQRLIDRHEPLRTSFDWADGKPVQRVHERVSFELAEHA LMDAADLNTFARAVVRPFDLRKAPLIRAFLATDGENRHTLLLDIHHIVADGVSMNVMARD FEELYRGGSLQPLPVHYKDAAVWQQEWMASEAREQQEQYWTFRLAGTLPVLQLPTDYPRP PEQSFEGAKLALPIPAELAEGIGAAAEQWGVTPFHIWLAAYHTLLHLMTGQDDLIVGTPI AGRFHPATESLVGMFVNTLPIRSRPSGELPFRAFAEQLKETALAALDNGLLPFEHMVTML DVPRDLSRNPLFDTMFVMQHMEAGQAAADALQFEAQVPDNRVSKLDLTFEIADQGAKGAA LTIEYATALFKEDSIHRMAEWYFRIVGLALAEPERPLGGIGLQGAAAAEKQCEAFNRTAA PYASGDTVEVYLERHAAETPQAVAVAAEDGALTYAELNRRSNRLAQALRKQGVKREERVA VVMDRSLEMMIAMFGVLKAGGAYVPVAPGLPPERIRYMLDNSGAKLVLTKGKAPEGLETF LPFMDVHEALAQERDDFPMEKLHDSRSLAYVLYTSGSTGQPKGVMIEHRSVVNRIGWMQK QYGLDASGVIMQKTPITFDVSVWELFWWSFAGAKLVLLPPGGEKDPALMMDTIARHGVTT MHFVPSMLHLFLEYPGLLRGEARLESLSHVFASGEALTADQVRRFRERIGVPFDARLVNL YGPTEATVDVSYYDCSDGDIPIQVPIGKPIDNISLYIVSEAMKLQPVGIAGELCISGAGL ARGYIGRPDLTAEKFVDNPFAAGSLMYRTGDLARWLPDGTIEYLGRIDHQVKIRGQRIEC GEIEHVLLGHPAVSEAVVMKRDAASGSEYLCAYIVCSEPADHQELRDFAALRLPDYMVPQ AVVELPAMPLSPNGKIDRKALPEPEPAADSGTPFVEAASDIELAIAAVWREILQRNDFGI HHRFFDVGGESLLLVQAHQRLEELYPGALGVTDLFTYPTIASLAAYLESRNRELAIWCWS GLPVADDCVSSGYAAERIGSVQFQLDRAVAEGLAELAASRSVTVEAVAYAVYLYFWRGES GMGRLVLPAMSHNGLIAPKEIDFAEVREFDTLLRHAAKRTSAGECYTARQIRKQPQAEAG FALFPLFAGAAQHGFKDREALLEQFDVVLYMDGAAAPSEAEGPKLGGVWTYNARRLGKEA VLDWASAYLELLSSVVEQYRAASGSAVSGA >gi|333605378|gb|AFDH01000088.1| GENE 21 28747 - 29619 740 290 aa, chain + ## HITS:1 COG:no KEGG:CLI_A0011 NR:ns ## KEGG: CLI_A0011 # Name: not_defined # Def: CAAX amino protease family protein # Organism: C.botulinum_F # Pathway: not_defined # 1 214 1 213 270 75 27.0 2e-12 MKKVLTMIGNIALYLGVFYALLYLLRSTYNYEVTLSFAKFLDRNPAMFMVVLFTLITLVY MLIFRIKGWIWPHAEKNLFRASGFKRLSASRVLLMIGLGLAGSLFSIGLIVIDDIARQFP SIPALVDDLIRGDSIWYVILGAGLIGPAFEEILFRGLIFSELRRVMPVYAALLLQAAAYA YFQPSAALSVISIGSGLIYGSLYLRTGSLWAPILVQNTAMGTIFLFKYIGFYEWFDKLDD VSLYIITALCLAALIGGSVYVWRTSGNGGIGARAGQALTADAPSAAHKGV >gi|333605378|gb|AFDH01000088.1| GENE 22 29624 - 30433 682 269 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315647101|ref|ZP_07900214.1| ## NR: gi|315647101|ref|ZP_07900214.1| caax amino protease family protein [Paenibacillus vortex V453] caax amino protease family protein [Paenibacillus vortex V453] # 59 266 1 208 211 337 92.0 6e-91 MKAWGMMLARVAVVIGLYFAWFFTATTLFFDYVYPKSTWFEQNTVTVIILNDMVGLPLML LAWRFIFKENLFKAAQFRVMGGKSVAIALWIGLGAGLFTVAFSRLPAIASDKYRFHELFD YLNRAEWYVFLVFLLLGNIYKETLFRGILMNEFRRVLPVWVAIVIQGVLYGALFFLGDIP LSLYGFLGAVIFALLYVWFKSIWAPIAAQVACQGSQYLLWHYGPETTDVTVMSIVMAVAA AIIAVGIFLAVKHRSSVSAPLSSKAVKSA >gi|333605378|gb|AFDH01000088.1| GENE 23 30430 - 31233 777 267 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315647100|ref|ZP_07900213.1| ## NR: gi|315647100|ref|ZP_07900213.1| hypothetical protein PVOR_17184 [Paenibacillus vortex V453] hypothetical protein PVOR_17184 [Paenibacillus vortex V453] # 1 267 1 267 267 363 89.0 8e-99 MKGLRVAGNTVLYLVIYAAIVMLVNQALYNWISDPGLKDWIADNSGIVLIVSNIIVLAVY LPLLRWQKISLSDLGFVPARGGSLLLSAGTGVWLGLFIAAFTRLPWIKATFPAISDLVAF VAGGSLIIFVLGSLLLGSLLEEWLFRGMLFHTLRQRLSVPWTVLLQAVLFGAVFMNVTIG AFAALGAIVYGAVRAGSRSLWGSLAAHVCSTGTLYIVLQWAGDWQSGTLGLLALVSGLGI AAHVLLLLRGSGGRAEKGQAVSDSITN >gi|333605378|gb|AFDH01000088.1| GENE 24 31248 - 41504 7211 3418 aa, chain + ## HITS:1 COG:BS_ppsD_3 KEGG:ns NR:ns ## COG: BS_ppsD_3 COG1020 # Protein_GI_number: 16078892 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Non-ribosomal peptide synthetase modules and related proteins # Organism: Bacillus subtilis # 1876 3254 2 1322 1523 768 35.0 0 MFQLDLLDTKKDTSGRKGRSGGSVSNVSLKDIAIVGISAKLPRAESHEAFWELLRSGKDL VGGFPDSRKEELKPYLRRMEAQYGSVSFFDGAYIEDISGFDYSFFRLSPKEASLMSPAQR LFLQTAWGALENAGYGGDALHGSRTGVFIGYNGDALHDYKRIIEALDPDALSMAAPGNLS SMIPSRISYLLNLRGPAISVDTACSSSLVAVHLACQSIRSGECEAAIAGSVKINVLPLDT GIRLGIESSDNRARTFDDSADGTGIGDGVIALLLKPLSRAQEDGDPIYAVIKGSAMNQDG SSVGITAPNALAQEDVIARAWQDADIDPETVTYMEAHGTGTSLGDPIEIDGLTRAFRRYT DKRQFCAIGSLKTNIGHLDHAAGIAGLLKGILSLVHKQLPPTLHYRSPNRNISFVDSPVY VNDELTPWETDGEARRCGVSAFGMSGTNCHVVLEEAPDGLPSGRLDRAELFCLSAHSMTA LERLVLLMRDWALQHRGDESRSLADLCYTLAVGRGAHRYRLAIAVSGWEELIQTLHAAAE RDLTGLALPNVRFGAADSAAAGNMRQQPVPNEREMDAMELGQRYVGGYEIDWKAIYLGQR RKRLPLPTYPFDSHRCWVEEARAGAALHTPFAAWNGYSVGGDIPEELGQEMNETFARWQA ALERSGGMTSQRRRGVALTGERSGLEWEQHVADVWGDLLGYDELPSDAGFYELGGDSIIA LKIVNRLSELAGVRIQAADLLGHADLPSFTALIERRLRESGAATAQRTNAGHDGQGADVG NGGHEANGGYDGQAASGGRDEAGGSGGHVGPLTGQASDSLSGDTLEPIPKAAPQEHYPVS SPQKRMYLQQQAMPDDRSYNLPELLHLEGAIDADRLEAVLQAIVERHETLRTTFHVIDGE IRQRIHAAIPFRLIRMEADEAEADGVLQSLFRPFRLDTAPLLRAALLTLGPKRHVLFLDM HHIASDGMSAGILLSDLMTLYLGGSLPPLPLQYKDYAVWQESRPLSGNAERYWREQCRGD WPLLSLPTDAPRPPVKGNHGETFDVYVEAGLTAAVRSLAAESGATPFMVLLSAYYTFLAH YTGAEDIAVGTPIAGRDRRELEAIAGMFTGTLALRAYPRADKPFRAFLSEVKEMATGAYA HADYPFEEIAQWMDRRDASRSPLFDTMFIMQNLGIPNVSSAGLSYRHQRFEHGTAKYDLM IQAVENGAELRLVVEYNADLFRRSTAERFMRHYVQLLRSVTLRPDATLGEAEMLTEEERL HMLALGRREADFPPPRCLHHCFKEQAKAVPGLPAVSCGGESMTYRELDRRTDALARTLRA KGVGRGSVVGIMAERSIPMLTAMLAVMKAGGAYMPIDPHYPGERIRYMLEDSGAELVFAD GARSGAGAVVPASLQVLDIADETMFSGGDDAAAAWPQDAADPMYVIYTSGSTGQPKGVIV PHRSFYNFGHSLRTFFDGQYDERDRCLSLTNISFDVSVAELFMPLMFGACTVLYPEPKLL DPRRIAEVITEERITFAYLPPSLLKEVARLLEQSSSAITLDKMLVGVEPIKDETLELYTK LNPEIRIINGYGPTEATVCSNMYAYKPGAYRGGYVPIGGPMHNVEIYIFGYGGQLAPINA AGELYIAGSGLADGYVNKPDMTAERFLPHPYREGRFMYRTGDIAKWLPDGNAMYVDRADQ QVKIRGVRIEMNEVRSQLISLPEVEDAVVVIREQASGDKELCAYVVASDKLPSREWRRKL KDKLPEAMIPAYIAAIDGIPLTPNGKVDRRALPEPELGLRERGKPELPRDGMEERVAAIW EEVLGDTAGPIGIHDDFFELGGHSLKAAVLAGKLQQATGALVPLSLIFELTSVAEIAAWL KERDGTAAAAEPIPKAERREWYPMSRAQRRQYMMQMLAGDATMYHVPFALRLQGRLDVAR LEDAFTALIRRHESLRTTFHMTKDEFRQMVHPPYAFKLEALDYAALTGDEALRGAPPDGA EVTRLMEVFQRPFHLDKLPLLRAGLLRLNEEDHLLLLDVHHIITDGVSSGLLVNELSQLY AGQALPELHVQYSDYAVWQEAGFANAAYAEHERYWMEVFEGKLAVLELPTDRPRPSLPSY KGLRHSFRLDARTTAEARKLAREAKTTLYTVLLGAFAAMLAKYSGQAEVIVGTPTAGRDH ADTHGMIGMFVNTLALRTRPARDKTVRAYMAELHNHVVGALSRQTYPFEELVEGLKADSD RSRNPLFDAMFVLQNMDRAVMEADGLVFSEIPFEAGTSKFDLTLEAVEREAEIELQLEYA TDLFHEETARRMAESYIVLVREMCRSQGRTVGELELMSESEREQLLALLAGGGMPVQAAS REGSNGRMEIRAEKGLTDRQEDAAASTQATAEWTGFVQKVERQAARTPDAAAIQFGAETV TYAELNERANRLAHSLRAKGVGPERIVALMASRSPLLLVGILGVLKAGGAYVAIDPAYPK ERIDWMLEDCGEALLLTEKAYAGAVTRAVAEWYLDDPELYAADRGNPEFVHKPDQLAYVL YTSGSTGRPKGVMIEHRGLAHFISGFRNRIPFEKGQSILAMASVSFDIFVVENLLPLTLG MRIVLAGEEELSDAALLQGLIDAHGVDVLQITPSRFKWWMNQRGETDGLQKLRILMIGAE PLTADVLGRLRAATGARLFNLYGPTETTVWTSIREVTEGEHISIGTPIEGSVMMVLDEGL KLQPTGVTGEICIGGPGVGRGYLSHPEWDVAFVPNPYAPGERMYRTGDLGRRLENGEFAY AGRRDFQVKIRGHRIEIGEIEQLLLRHEQVKETVVTAFQEEDGEYALCAYVVVQNAADAE PDGAAPSGRLTGQLREYLGDKLPSYMVPAFMVVLEAIPLTPTGKIDRRALPKPGPADAGK RELVPLSTDTERKLAEIWKELLGMDAISAKDSFFDLGGHSLKAAGMVSRIAERFGIQMPL RDIFMNPTLEGLAAHLDTSGTVAAARIPKQPEREHYPMSRPQRRQFMMGLISDEATMYHV PFAVHMQGKLDVERLEEAFLAIMRRHESLRTTFHHEEDEFRQRVHAEPVFTLERNARLRM AAGKLLAEGGDEGLFGGISALMERFIRPFDLGSLPLFRAGLIPLGEERHLLLLDFHHIIT DGVSVSVLLQELTTLYGGGELPTLDIQYRDYTVWQEEQIGSEAYMGHERYWLEAFEGELP TLDLKTALSRPELQNFEGSLINFRLDEELTLKIKAFARERGTTLYTVLLGAYSMLLSKWS DEEDIIIGTPVAGRNHAQLEGLIGMFVNTVAIRSFPESYRTVGDYLSELHEDVLRALEHQ NYPFEDLVQKLGIEQDRSRNPLFDTMFILQNIDRVAYRSGGIEFDPKEFDPGVSKFDLTL EAAERDGRIGFTLEYATSLFREENAWALADDYTAILHALVEDGAKKKISAVLAASKLA >gi|333605378|gb|AFDH01000088.1| GENE 25 41538 - 42509 1051 323 aa, chain + ## HITS:1 COG:no KEGG:Ccel_2391 NR:ns ## KEGG: Ccel_2391 # Name: not_defined # Def: hypothetical protein # Organism: C.cellulolyticum # Pathway: not_defined # 1 321 1 317 324 143 28.0 1e-32 MKLSMERKPFNEFWMNCMLNQAFSIAVSEEPSYRDAAYLNIYRYYPWEAATDKDFRYPTI DTLYYMDDPARFPLSQVIRYIEPGHFRSMETVPDEIRAMLEGGRNLSVNVDLYDWLPGSM AWKKFHWYHYSLFNGYDKERGTFYVIDDTLAGYEEHEVPEERLLKAYGNSEYNVNPSYLG PAFYVYNLQEKIQPYELKLTEVVENAERLARELGEFSIEGMWNVDSDPEKKQAHLTYGLV GVNIICNRHIANMSLLRSMREKRLIGEALHESLSGQLGAVRDGWDLVKDRFVTGDFERGR ELALADDMFAKEKAFWSTLVAGA >gi|333605378|gb|AFDH01000088.1| GENE 26 42598 - 43266 433 222 aa, chain + ## HITS:1 COG:PA2411 KEGG:ns NR:ns ## COG: PA2411 COG3208 # Protein_GI_number: 15597607 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Predicted thioesterase involved in non-ribosomal peptide biosynthesis # Organism: Pseudomonas aeruginosa # 2 211 21 230 254 142 40.0 4e-34 MYKRWTNRLHPGVRLVPAELAGRGSRMDEPFYADAAEAVRDLLPLVRETALGSDSYALFG HSMGSLLGYEVLHALREEGFPLPAAVFLSGRGAPHCEQKETRRTHMLPDDEFLEELKRLG GMPGELFRHRELLDMFMPILRADFKLVGEYEHRMRPQLPLRLTILSGKDDGSVKGPLGEW ERYATGGCELMPFEGGHFFLHERERDVVAAINKMLTEAPAPI >gi|333605378|gb|AFDH01000088.1| GENE 27 43288 - 44568 656 426 aa, chain + ## HITS:1 COG:CAC3575 KEGG:ns NR:ns ## COG: CAC3575 COG0331 # Protein_GI_number: 15896809 # Func_class: I Lipid transport and metabolism # Function: (acyl-carrier-protein) S-malonyltransferase # Organism: Clostridium acetobutylicum # 2 305 1 302 308 197 37.0 3e-50 MLNKHAIWFPGQGSQRVGMGKTLSERLAVVKATMEEANEALGMRLDSLMYEGPITELTRT DNAQPAILALGVAMYRVYSREWGYLPAMAAGHSLGEITALTCAGAITFPDALRLVRRRGE LMQGAAAAGIGAMAAVNGPSPDVVAKVCLETSAGFTDGSRIVVVSNMNSARQTVISGHKE AVHEASERLSAQGAAVIPLQVSAPFHSPLMAPAAAQFAEVLSRVSFGEMDFPVVSSLTGQ PYGNSAEIAGMLARGLTDPVNWPAVLAFQKSIGVAAAVELGPGNVLKRLAPPYGLRVFAF DDKEDEAHLVDASRQTDAYSIELLNRCLAIATCVRNRNWNAAEYEQGVALPYRGVQQLVD RLRETGEQVEEAHVRQALAMLESMFRTKGTSAEEQERRLARLQGEFGLRGLPGVSPADRP YAGSLL >gi|333605378|gb|AFDH01000088.1| GENE 28 44583 - 45971 1101 462 aa, chain + ## HITS:1 COG:MT2199 KEGG:ns NR:ns ## COG: MT2199 COG0624 # Protein_GI_number: 15841632 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Mycobacterium tuberculosis CDC1551 # 26 450 17 445 448 216 34.0 1e-55 MGIRLANDELDQDGVERPAELPSPVEILQTLIRFNTTNPPGEEAASIMYIRQQLEDAGIE TRICALDPARPNLLARMKGSGEAPPLLLYGHVDVVGVDKQAWSRDPFGGEIHDGFVWGRG ALDMKGGVAMLVSAFLRAHVRKLPLRGDLILAIVSDEEAGGEYGASFLVERHADYFAGVK YALGEFGGFAFHALGKTFYPIMVAEKQLCWLKATIRGDGGHGSMGKSGADCMAQLGNMLQ TLSRNKLPIRVVPAARLMIEGMAATLPLLPGLLLRGLLRPRLGGLILKLLGEKGGTFAPL LRNTVSATVVRGGEKINVHPSEITVELDGRTLPGVTPQQFMDELRRFAIHDSIGLEVLRH DPCAAAPDMGMFGLLSDVLKEADKEAVPVPMLLPGGTDGRLFARLGIQTYGFLPMPLPKD MQFTKLIHAADERIPVEAVGFGTDAIYRVLERYGAQPLSSDG >gi|333605378|gb|AFDH01000088.1| GENE 29 46189 - 46338 147 49 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MEVKMQAIQMRLEGVTGGEVMGAVKHPKQVPINKQDQINGKSDDSYGNA >gi|333605378|gb|AFDH01000088.1| GENE 30 46829 - 47314 218 161 aa, chain - ## HITS:1 COG:no KEGG:Bcer98_0376 NR:ns ## KEGG: Bcer98_0376 # Name: not_defined # Def: TetR family transcriptional regulator # Organism: B.cereus_NVH # Pathway: not_defined # 2 158 40 193 194 74 28.0 1e-12 MSKGNLYHHFKNKEVLLLQLLTQHSEQMSQKWLHLAEQSNSPSQQLLEMADLFGRDCESP LLHALEEYARTLSSESEALATLREITDAAYRAIKQVLQKGIDQGVFINEDIETLSFGVMS TIAGATQLCLTMPKLSGEEYAALHVKAIKLLLKGISIDDPN >gi|333605378|gb|AFDH01000088.1| GENE 31 47456 - 48193 168 245 aa, chain - ## HITS:1 COG:BS_yyaK KEGG:ns NR:ns ## COG: BS_yyaK COG1266 # Protein_GI_number: 16081135 # Func_class: R General function prediction only # Function: Predicted metal-dependent membrane protease # Organism: Bacillus subtilis # 15 190 62 241 299 77 28.0 3e-14 MNALLPATRSGLPSLITLYLSFFFLILGVCIVTRYFFKIRFKAFLFEGKRPNYRKFVNYF SLYVMALILYLLVDIAVHPQAFTLHFNPLPWLGVLLVTAPLILIQSAAEEILFRGYMYRM FRSLRGGVFWSILLTSLTFALIHGLNPEMLNYGIFGPLYYLQGAFFLGVVAYHTNGLAAP VGIHFATNIFNTSIWGYGSSALDNMGLQSIVYRHALDMRFAFFGIFAIVISYSAFQFFKQ KRNRL >gi|333605378|gb|AFDH01000088.1| GENE 32 48653 - 49198 167 181 aa, chain - ## HITS:1 COG:FN0555 KEGG:ns NR:ns ## COG: FN0555 COG1396 # Protein_GI_number: 19703890 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Fusobacterium nucleatum # 2 181 17 199 199 129 39.0 3e-30 MENIDIGKKVEKYRKAKGFSARELARLAEITPSMLSQIERGLANPSIQTIKVLAKSLEVP TFSFFIEETNTVDLVVRSNNRKKMVIENLSYELVSPDFTGNLATAIMNFPPNTASSEKQM EHKGEEVAFVLEGKIKVFLDDEEYILEPGDSVKIPAQMKHKWENNFNEQAAILFSVTPPA F >gi|333605378|gb|AFDH01000088.1| GENE 33 49343 - 50155 -69 270 aa, chain + ## HITS:1 COG:BH1762 KEGG:ns NR:ns ## COG: BH1762 COG3048 # Protein_GI_number: 15614325 # Func_class: E Amino acid transport and metabolism # Function: D-serine dehydratase # Organism: Bacillus halodurans # 14 265 3 253 442 387 74.0 1e-107 MRGIAKVKEFEFRELQTWKAHYPLLNKLISTKELVWLNPNLEKFETGIKKSPLTQDDVRD AEERLKRFAPYIAKVFPETKTMNGIIESPLKRIPSMKQSLEQNYQQPILGELLLKCDSHL PISGSIKARGGIYEVLKHAEGLALQHQLLTIHDDYSILDSDKFRTFFSQYSIAVGSTGNL GLSIGIMSAKLGFNVTVHMSADAKQWKKDLLRNKNVHVIEYESDYSKAVEEGRLQADGDP SCYFVDDENSHDLFLGYAVAASRLKNNWKS >gi|333605378|gb|AFDH01000088.1| GENE 34 50455 - 50724 93 89 aa, chain + ## HITS:1 COG:BH1762 KEGG:ns NR:ns ## COG: BH1762 COG3048 # Protein_GI_number: 15614325 # Func_class: E Amino acid transport and metabolism # Function: D-serine dehydratase # Organism: Bacillus halodurans # 1 79 360 438 442 109 63.0 2e-24 MSDEQLYTLLKELIDTEGIHLEPSALAGMIGPIKLSKEGTDYLLKHNLTKKMSKGAHIIW GTGGNMVPEEMMRYYYQKGLNLTQTKKNP >gi|333605378|gb|AFDH01000088.1| GENE 35 50896 - 51384 297 162 aa, chain + ## HITS:1 COG:no KEGG:BBR47_27280 NR:ns ## KEGG: BBR47_27280 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 1 161 1 157 158 146 44.0 2e-34 MGMRGYYFAMDDNLVQQIAAGDIALKSLKIDDYPGLDIDRSWEAIHYLLCGDISDGEPPL GYVVPLTSDKGIDFGSFGAFSLRAEQVAEALQAMSELDEAQLRLRYDFPVMLKEEVYPLE AGIVSDEDEEEFFAYMLQHFNEIRRFYSQTAAEGKGLIFYIF >gi|333605378|gb|AFDH01000088.1| GENE 36 51529 - 51711 70 60 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLDEASMIEWATEKGIVNGIAVDEQKKAIEIAKNRLNMGIQVPDIAKASELSEAETESLK >gi|333605378|gb|AFDH01000088.1| GENE 37 52137 - 52454 109 105 aa, chain - ## HITS:1 COG:mll2153 KEGG:ns NR:ns ## COG: mll2153 COG0451 # Protein_GI_number: 13471998 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Mesorhizobium loti # 2 100 196 294 294 100 53.0 9e-22 MHRSDAAKLIRLGIEKAPAGSRLHAVAEETISTRAIAEAIGRALDIPVTTIAPEDAAAHF GFVGRFFKLSMNGSSERTRELLAWTPAGPTLIDDILAGAYKEAGQ >gi|333605378|gb|AFDH01000088.1| GENE 38 53445 - 53948 162 167 aa, chain + ## HITS:1 COG:BS_ydeS KEGG:ns NR:ns ## COG: BS_ydeS COG1309 # Protein_GI_number: 16077599 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus subtilis # 1 161 25 181 198 75 30.0 3e-14 MIEVGYAAMTMKGISERAGVSRQTVYRWWSHKAEILFEASAADAEEELEISLSGDPLDDI TAYLEALLRFLAHSLAGAAYRALLGEAQHDSVVAELLSAKDPLGDSARVVIERALGKDTL PVPLDQATALLIGPSFFWILSGRDPAQLVPRELAENFIRDLQARQSR Prediction of potential genes in microbial genomes Time: Sun Jul 17 09:43:58 2011 Seq name: gi|333605368|gb|AFDH01000089.1| Paenibacillus sp. HGF7 contig00141, whole genome shotgun sequence Length of sequence - 6957 bp Number of predicted genes - 7, with homology - 4 Number of transcription units - 4, operones - 2 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 162 127 ## - Prom 353 - 412 4.2 + Prom 278 - 337 5.2 2 2 Op 1 . + CDS 386 - 466 109 ## + Term 475 - 513 5.2 3 2 Op 2 . + CDS 521 - 1039 340 ## 4 2 Op 3 . + CDS 1026 - 3038 1948 ## COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain + Term 3046 - 3079 6.1 + Prom 3196 - 3255 5.1 5 3 Tu 1 . + CDS 3298 - 4308 1040 ## COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases + Term 4511 - 4556 11.1 - Term 4499 - 4544 11.1 6 4 Op 1 . - CDS 4562 - 5767 1602 ## Pjdr2_1422 S-layer domain protein - Prom 5847 - 5906 2.6 7 4 Op 2 . - CDS 5937 - 6485 577 ## GYMC10_5562 hypothetical protein Predicted protein(s) >gi|333605368|gb|AFDH01000089.1| GENE 1 3 - 162 127 53 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTVLVWLLSAAACAYLFLIVPTMWLKVERVRVPAGLGIKILQISDLHVEKLRV >gi|333605368|gb|AFDH01000089.1| GENE 2 386 - 466 109 26 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKRWVFAILTVAALVYSSGLAFPWGP >gi|333605368|gb|AFDH01000089.1| GENE 3 521 - 1039 340 172 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MIYFIVLAVVITLLSGRNPLSLVEKVNFKLPYLLLGSFAAQIAIFAVTVRTNRTYPYWTE AAILAVLLFLWLNRKVPGIPLIFLGALWNWTALVLHGGLMPVSDTALAWAGLASLPENEP RHQLMAASAFWWMGDWIPLVRRVISIGDVGIGAGLIRFMLGNSVKRRKNEGP >gi|333605368|gb|AFDH01000089.1| GENE 4 1026 - 3038 1948 670 aa, chain + ## HITS:1 COG:RSc1545 KEGG:ns NR:ns ## COG: RSc1545 COG5001 # Protein_GI_number: 17546264 # Func_class: T Signal transduction mechanisms # Function: Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain # Organism: Ralstonia solanacearum # 227 652 333 752 776 306 39.0 9e-83 MKDHNPFTSLLSAFGILTLITASAFIAQNAYDLKILLPIAVMVIVFEMMPLKMPNGTYFS GVTIGFILSLFEMGFFASTFFLVLNTLTFFTLHSKPFYKIRWFRFFSTLGMYGISMLAAW GTGALTAQAPLYVKIVCVFLAFEGVNLLLRMGIVRSVTGTPVSAGKAIYEARSLQIGILI ASVVLYKMLKQPSYELFISEIVFTIIAIKIIHYFVSGYLKQIDIIEESNKRYKKMAYYDS VTGLPNRAHFNERLTQDIAVARETKGKVGLLFLDLDQFKNINDTMGHISGDALLVQVAGR LQSCLGQDHTVSRLGGDEFTIIVRDIAGAQDCVLVAETVLSALKTGFFLQGKDIYITPSI GISLYPDNGYDSETIVKNADTAMYRAKELGGNLYSMFTSDLEETIEKKLILQRNLHKALE RGEFHLVYQPQLQLDTGQIQGTEALVRWNNPELGLVSPEDFIPLAEESRQILSIGEWVLR TACEQNKAWQNEGFPPVRMAVNLSSIQFEHDELIPTIRRILDETGLEARWLELEITESLL LRNKIKTMRTLRQLKELGVHIAMDDFGVGYSSLSYLNYYPFDRLKIDKSFIHHMNDRTGD EWIVRTVIQLAHGLHMTVVAEGVETEDQLAYLKERGCDCIQGFLISKPLSPSRLQEKLWG GSGTPETRPD >gi|333605368|gb|AFDH01000089.1| GENE 5 3298 - 4308 1040 336 aa, chain + ## HITS:1 COG:BH0875 KEGG:ns NR:ns ## COG: BH0875 COG2141 # Protein_GI_number: 15613438 # Func_class: C Energy production and conversion # Function: Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases # Organism: Bacillus halodurans # 1 332 1 332 335 367 54.0 1e-101 MKLGILDQSQIAEGRTASDALKETTRLAQEADRLGFTRYWVSEHHASKSLAHSSPEVLLA HLAAATSRIRVGSGGIMLPHYSAYKVAENFRLLEALHPGRIDLGLGRAPGGMPLATRALQ ADKYVSIDRYPDQVADIAGYLHEAMPPEHPFAALQASPSIPTAPEVWLLGSSGESARIAA RQGAAFGFAQFFCSPGGEEAMRHYKAHFQPSVLGDKPRTLAAVLAVCADTEEEANKLASS TDLYFLRLERGLELGFFPSVDTALNYPYTEYDLARIKERRERRIVGNPEQVKSRLHEVAE AYSADELLIVSPIHNFGARLRSYRLIADAFGMKGEE >gi|333605368|gb|AFDH01000089.1| GENE 6 4562 - 5767 1602 401 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_1422 NR:ns ## KEGG: Pjdr2_1422 # Name: not_defined # Def: S-layer domain protein # Organism: Paenibacillus # Pathway: not_defined # 2 400 3 398 399 335 48.0 3e-90 MKKLNMKKTVLSTVVLAMAMGGGTAAFANGNGKDKDHDKDKDWKEGKNGGVHGSFDFRIT FDDLKGSDVEWALKNIASLSSKRVFEGYEDGSFKPRNTVTRIEAITAAVRLMGLRDKAES NEEKQTKLNFKDANKIPDWAVGYVAVALENDLFGESEDMVQPSKPADRLWATVLLVKAMK LDAEAKAKVNTQLSFKDAKQIPAGSVGYVAVAIEKGLIDGFEDNTFRPNMPVTRAQLAAL LDRTDSQMPGQDQTTAVGKVTGTVSGNTLVLDQNGTLKTYALHPEVFVYRNGAKVSASQL QNGDVVRLRSYNNTVVFIEVTKKAVEDRTLQVSGFFDSMTLNKEGRIATVTVTNQVYGNT DKATYKVASDVAIQGDVSRLVKPTAVELKGKDKVVETIIIK >gi|333605368|gb|AFDH01000089.1| GENE 7 5937 - 6485 577 182 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_5562 NR:ns ## KEGG: GYMC10_5562 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 28 181 29 182 192 101 34.0 2e-20 MKIIRRIIVVLLVLAVAAGLAAWGLLTYIKPQQKLDLAYTELSLESQLVDIIRSKKPEVR LSNEELNQLGKKAIAKHARVSPDVTITGADFTRSGEDLTADVNLLWKNTVPVGAQMTFKL AWTGKELTVTHTGTHIRNFEVPPGLVSLAPVSISLDSYLPSIVHIKDVRFDPDFVVIGLT LR Prediction of potential genes in microbial genomes Time: Sun Jul 17 09:44:45 2011 Seq name: gi|333605299|gb|AFDH01000090.1| Paenibacillus sp. HGF7 contig00112, whole genome shotgun sequence Length of sequence - 63479 bp Number of predicted genes - 70, with homology - 65 Number of transcription units - 31, operones - 16 average op.length - 3.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 42/0.000 + CDS 72 - 845 202 ## PROTEIN SUPPORTED gi|90020817|ref|YP_526644.1| ribosomal protein S16 2 1 Op 2 . + CDS 897 - 1700 917 ## COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components 3 1 Op 3 . + CDS 1737 - 2450 685 ## COG0785 Cytochrome c biogenesis protein + Term 2576 - 2606 -0.7 4 2 Tu 1 . - CDS 2474 - 3532 1036 ## COG1533 DNA repair photolyase - Prom 3670 - 3729 6.4 + Prom 3633 - 3692 8.4 5 3 Op 1 1/0.000 + CDS 3735 - 4169 509 ## COG1321 Mn-dependent transcriptional regulator + Term 4174 - 4219 8.3 + Prom 4177 - 4236 1.9 6 3 Op 2 . + CDS 4289 - 5254 886 ## COG1752 Predicted esterase of the alpha-beta hydrolase superfamily + Term 5382 - 5441 14.3 - Term 5385 - 5416 3.4 7 4 Op 1 . - CDS 5434 - 5721 190 ## gi|167465605|ref|ZP_02330694.1| hypothetical protein Plarl_24103 8 4 Op 2 . - CDS 5718 - 6668 1128 ## COG3872 Predicted metal-dependent enzyme - Prom 6700 - 6759 4.3 + Prom 6741 - 6800 3.0 9 5 Op 1 . + CDS 6828 - 7385 692 ## GYMC10_2085 hypothetical protein 10 5 Op 2 4/0.000 + CDS 7480 - 7923 486 ## COG0757 3-dehydroquinate dehydratase II 11 5 Op 3 10/0.000 + CDS 7928 - 8998 978 ## COG0006 Xaa-Pro aminopeptidase 12 5 Op 4 . + CDS 9025 - 9582 620 ## COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) + Term 9599 - 9640 9.4 + Prom 9672 - 9731 6.3 13 6 Op 1 9/0.000 + CDS 9808 - 10839 1388 ## COG2984 ABC-type uncharacterized transport system, periplasmic component + Term 10851 - 10887 8.7 14 6 Op 2 13/0.000 + CDS 10907 - 11827 1095 ## COG4120 ABC-type uncharacterized transport system, permease component 15 6 Op 3 . + CDS 11814 - 12608 902 ## COG1101 ABC-type uncharacterized transport system, ATPase component + Term 12617 - 12670 9.0 + Prom 12717 - 12776 5.1 16 7 Tu 1 . + CDS 12812 - 14068 1293 ## COG0527 Aspartokinases + Term 14166 - 14210 10.2 - Term 14132 - 14162 3.0 17 8 Op 1 . - CDS 14237 - 14701 546 ## COG2707 Predicted membrane protein - Prom 14724 - 14783 1.5 18 8 Op 2 1/0.000 - CDS 14798 - 15535 699 ## COG2045 Phosphosulfolactate phosphohydrolase and related enzymes 19 8 Op 3 . - CDS 15525 - 16370 833 ## COG1809 Uncharacterized conserved protein - Prom 16452 - 16511 1.9 + Prom 16408 - 16467 2.6 20 9 Op 1 . + CDS 16518 - 16784 446 ## GYMC10_2090 hypothetical protein 21 9 Op 2 . + CDS 16854 - 18047 707 ## COG3854 Uncharacterized protein conserved in bacteria 22 9 Op 3 . + CDS 18052 - 18573 568 ## Pjdr2_2295 stage III sporulation protein AB 23 9 Op 4 . + CDS 18589 - 18792 361 ## BH2795 mutants block sporulation after engulfment 24 9 Op 5 . + CDS 18803 - 18955 104 ## 25 9 Op 6 . + CDS 18957 - 19193 208 ## Pjdr2_2297 stage III sporulation protein AD 26 9 Op 7 . + CDS 19245 - 20444 1527 ## Pjdr2_2298 stage III sporulation protein AE + Prom 20454 - 20513 4.0 27 10 Op 1 . + CDS 20587 - 21369 840 ## Pjdr2_2299 stage III sporulation protein AF 28 10 Op 2 . + CDS 21413 - 22054 763 ## PPSC2_c3231 stage III sporulation protein ag 29 10 Op 3 . + CDS 22152 - 22925 1133 ## Pjdr2_2301 mutants block sporulation after engulfment (stage III sporulation) + Term 22978 - 23022 11.5 + Prom 22980 - 23039 6.2 30 11 Op 1 27/0.000 + CDS 23084 - 23578 480 ## COG0511 Biotin carboxyl carrier protein 31 11 Op 2 4/0.000 + CDS 23597 - 24955 1404 ## COG0439 Biotin carboxylase 32 11 Op 3 . + CDS 25041 - 25451 613 ## COG1302 Uncharacterized protein conserved in bacteria 33 11 Op 4 . + CDS 25531 - 26097 413 ## GYMC10_2102 hypothetical protein 34 11 Op 5 . + CDS 26112 - 26342 380 ## GYMC10_2103 hypothetical protein + Prom 26348 - 26407 4.6 35 12 Op 1 4/0.000 + CDS 26477 - 26908 620 ## COG0781 Transcription termination factor + Term 26918 - 26976 4.1 + Prom 26936 - 26995 4.8 36 12 Op 2 7/0.000 + CDS 27057 - 27929 962 ## COG0190 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase 37 12 Op 3 . + CDS 27933 - 29300 1317 ## COG1570 Exonuclease VII, large subunit 38 12 Op 4 . + CDS 29284 - 29559 382 ## PPE_02839 probable exodeoxyribonuclease VII small subunit (exonuclease VII small subunit) (EC:3.1.11.6) 39 12 Op 5 13/0.000 + CDS 29556 - 30458 982 ## COG0142 Geranylgeranyl pyrophosphate synthase 40 12 Op 6 6/0.000 + CDS 30553 - 32454 1835 ## COG1154 Deoxyxylulose-5-phosphate synthase 41 12 Op 7 . + CDS 32576 - 33418 747 ## COG1189 Predicted rRNA methylase 42 13 Op 1 . + CDS 33547 - 34017 491 ## Pjdr2_2314 hypothetical protein 43 13 Op 2 8/0.000 + CDS 34014 - 34460 319 ## COG1438 Arginine repressor 44 13 Op 3 3/0.000 + CDS 34493 - 36229 1849 ## COG0497 ATPase involved in DNA repair + Prom 36231 - 36290 1.8 45 13 Op 4 2/0.000 + CDS 36341 - 37675 1289 ## COG0750 Predicted membrane-associated Zn-dependent proteases 1 + Prom 37699 - 37758 7.5 46 13 Op 5 . + CDS 37875 - 38669 885 ## COG0784 FOG: CheY-like receiver + Term 38734 - 38791 11.1 47 14 Op 1 . + CDS 39251 - 40090 425 ## GYMC10_2460 coagulation factor 5/8 type domain protein 48 14 Op 2 . + CDS 40125 - 44441 170 ## PROTEIN SUPPORTED gi|163764957|ref|ZP_02172007.1| ribosomal protein L10 + Term 44521 - 44592 8.2 - Term 45140 - 45178 7.1 49 15 Tu 1 . - CDS 45351 - 45527 133 ## gi|327439848|dbj|BAK16213.1| coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase - Term 46127 - 46177 3.4 50 16 Tu 1 . - CDS 46368 - 46661 226 ## BMQ_2667 hypothetical protein - Prom 46695 - 46754 4.2 - Term 46684 - 46741 11.3 51 17 Op 1 . - CDS 46777 - 47262 45 ## COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases 52 17 Op 2 . - CDS 47307 - 47540 158 ## - Prom 47778 - 47837 8.8 - Term 47973 - 48013 -0.9 53 18 Tu 1 . - CDS 48021 - 48320 57 ## COG0640 Predicted transcriptional regulators - Prom 48348 - 48407 3.1 + Prom 48631 - 48690 4.5 54 19 Tu 1 . + CDS 48814 - 49167 245 ## + Term 49192 - 49235 6.2 - Term 49171 - 49229 17.0 55 20 Tu 1 . - CDS 49231 - 50154 941 ## COG1619 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF - Prom 50281 - 50340 1.9 56 21 Tu 1 . + CDS 50483 - 50947 441 ## RBAM_008290 YfjM + Term 51116 - 51149 2.0 - Term 51166 - 51201 7.4 57 22 Tu 1 . - CDS 51332 - 53164 1817 ## COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases - Prom 53391 - 53450 5.6 + Prom 53307 - 53366 5.4 58 23 Tu 1 . + CDS 53482 - 53931 451 ## ABC0230 hypothetical protein + Term 53948 - 53985 -0.7 - Term 53936 - 53973 3.1 59 24 Tu 1 . - CDS 54005 - 54613 640 ## COG1268 Uncharacterized conserved protein - Prom 54650 - 54709 6.1 + Prom 54575 - 54634 5.1 60 25 Op 1 15/0.000 + CDS 54765 - 55634 567 ## COG1122 ABC-type cobalt transport system, ATPase component 61 25 Op 2 . + CDS 55615 - 57561 1527 ## COG1122 ABC-type cobalt transport system, ATPase component + Term 57628 - 57686 9.9 - Term 57624 - 57665 8.2 62 26 Tu 1 . - CDS 57692 - 57961 208 ## PPSC2_c1339 protein - Prom 58015 - 58074 7.0 + Prom 57976 - 58035 5.3 63 27 Tu 1 . + CDS 58070 - 58345 348 ## gi|167464499|ref|ZP_02329588.1| hypothetical protein Plarl_18406 + Term 58346 - 58399 8.4 64 28 Tu 1 . - CDS 58288 - 58542 203 ## - Prom 58585 - 58644 5.3 + Prom 58547 - 58606 6.9 65 29 Op 1 . + CDS 58758 - 58967 254 ## 66 29 Op 2 . + CDS 59016 - 59477 503 ## COG0599 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit + Term 59510 - 59563 12.3 67 30 Tu 1 . - CDS 59739 - 59996 384 ## GYMC10_2123 hypothetical protein 68 31 Op 1 5/0.000 + CDS 60305 - 61729 1020 ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 + Prom 61743 - 61802 7.2 69 31 Op 2 28/0.000 + CDS 61850 - 62851 1114 ## COG1071 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit 70 31 Op 3 . + CDS 62878 - 63478 593 ## COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit Predicted protein(s) >gi|333605299|gb|AFDH01000090.1| GENE 1 72 - 845 202 257 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|90020817|ref|YP_526644.1| ribosomal protein S16 [Saccharophagus degradans 2-40] # 14 214 12 208 318 82 28 6e-15 METWKPDGCHNKIVEFSGISFSYGSKPVITDLNFDVLERDFVGLIGSNGAGKTTLLRMLV GLHKPTEGDIRLFGQPIRQFRDWERIGYVPQKNSLNPLFPATVREVVMSGLYTKKKLYKR LTKEDMRRCDDAMEAMRIEDLAKRRIGELSGGQQQRVFLARAIANNPELLILDEPTVGID AESQAVFFNMIRHMHQHHHMTFIMVSHDREMMRSYLGSEPQTQSGGLKFFVKHTHEPENC EETDLTHSTVRELQTSQ >gi|333605299|gb|AFDH01000090.1| GENE 2 897 - 1700 917 267 aa, chain + ## HITS:1 COG:BH1395 KEGG:ns NR:ns ## COG: BH1395 COG1108 # Protein_GI_number: 15613958 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Mn2+/Zn2+ transport systems, permease components # Organism: Bacillus halodurans # 4 262 6 272 287 171 41.0 1e-42 MDIFTEPFFVRALIGGILIGLTAPLMGVFLVLRRLSMIGDTLAHVSIAGVALGFLLGVYP IGMGLLFALLASFAIEKLRKAYKTYAELSIAIIMSGGVALATLLFTLGKGYNINVMSYFF GSIYTLDSSDLWVVFGVCILVLAVVALHFKELFLMFFDEEAAGVSGLPLKVYNIMITMLT ALVISVSIKIVGALLVSALLTIPVACSLLAAKSFRHSVVLSVIISEIGVVAGLALAAWYD FAPGATIVLSLIVVLIVQLVWKTVRRA >gi|333605299|gb|AFDH01000090.1| GENE 3 1737 - 2450 685 237 aa, chain + ## HITS:1 COG:BS_ccdA KEGG:ns NR:ns ## COG: BS_ccdA COG0785 # Protein_GI_number: 16078856 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Cytochrome c biogenesis protein # Organism: Bacillus subtilis # 1 230 1 228 235 212 50.0 4e-55 MQHVNVWLAFWAGFASFISPCCLPLYPSYLSYITGISVSELKSGQTKGAARLQTMAHTLA FILGFSIIFYSLGLAASSVSEFFVTNRDLLRQIAALLILVMGLFLLGIFQPKWMMRERKL QFKWKPAGYLGSVLIGIGFAAGWSPCIGPILSSMLVMAAAEPDSWLPLISAYSLGFAIPF FVLSFFIGSTKWILRYSATIMKIGGGVMIVFAILLYTNQMYKITIWLNNITPQWLQF >gi|333605299|gb|AFDH01000090.1| GENE 4 2474 - 3532 1036 352 aa, chain - ## HITS:1 COG:BH2808 KEGG:ns NR:ns ## COG: BH2808 COG1533 # Protein_GI_number: 15615371 # Func_class: L Replication, recombination and repair # Function: DNA repair photolyase # Organism: Bacillus halodurans # 15 352 6 343 343 452 65.0 1e-127 MATEQMTRTRSTALFVPELVYFEPDALLYPKGKRILEWAQSKGLPIHMTTSHNRITNLPG ETELEKYRIAKRTLVVGIRKTLKFDTSKPSAEYAMPIATGCMGHCHYCYLQTTLGNKPYV RVYVNTDDILKAAKQYIEERAPEITRFEAACTSDPVGLEHITGSLKEYIEFMANEPLGRL RFVTKYHHVEPLLDAKHNKHTRFRFSVNADYVIKNFEPATSAFHERIEAAGKVARAGYPL GFIIAPIIWHDGWEKGYEELIVKLHNALPPEALDDLTFELIQHRFTKTAKNVIERRYPKS KLEMDEAKRKYKWGRYGRGKYVYPDEQATALREFITDQIFDKFPNAKIEYFT >gi|333605299|gb|AFDH01000090.1| GENE 5 3735 - 4169 509 144 aa, chain + ## HITS:1 COG:BS_yqhN KEGG:ns NR:ns ## COG: BS_yqhN COG1321 # Protein_GI_number: 16079508 # Func_class: K Transcription # Function: Mn-dependent transcriptional regulator # Organism: Bacillus subtilis # 1 139 1 139 142 184 72.0 4e-47 MATPSMEDYLERIYKLIDEKGYARVSDIAEGLEVHPSSVTKMIQKLDKDKYLIYEKYRGL VLTSKGKKMGKRLVDRHALLEQFLTVIGVQEENIYRDVEGIEHHLSWDSITCIETLIEYL NRDPARLEDLRSIRAELDNSSDSE >gi|333605299|gb|AFDH01000090.1| GENE 6 4289 - 5254 886 321 aa, chain + ## HITS:1 COG:BH2805 KEGG:ns NR:ns ## COG: BH2805 COG1752 # Protein_GI_number: 15615368 # Func_class: R General function prediction only # Function: Predicted esterase of the alpha-beta hydrolase superfamily # Organism: Bacillus halodurans # 1 304 1 296 296 231 41.0 2e-60 MKINAVFEGGGVKGIALAGAVSSALDNGFEFHDVAGTSSGSIVAAFLAAGYTGEEIKRLI IETPFHKFLKRSPIFDTGIVGSAARLIWKKGLYSGDALEDWVREKLEVKGIRKFGDLRKN QLRIVASDISQGKLLVFPDDVAQYGIDPGRFSIARAVRMSSSIPYFFDPVKIRKPARQTR HDEPFRNQFVYIVDGAILSNFPLWLFDEPEQQPGRIPTLGFSLVGKIPKHIHKINGVISM FQALFTTMMDAHDTRYIEENNYFRTIKIPALNVNSTQFNLTLEDSENLYEAGYRASDDYF RKWSMHLYESAYEKYVLRKPV >gi|333605299|gb|AFDH01000090.1| GENE 7 5434 - 5721 190 95 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|167465605|ref|ZP_02330694.1| ## NR: gi|167465605|ref|ZP_02330694.1| hypothetical protein Plarl_24103 [Paenibacillus larvae subsp. larvae BRL-230010] # 3 95 4 86 86 71 41.0 2e-11 MNRRWSAATVVIAALALIGLAYSLNQFLIPLLVLGLIFVLYKMAPRKGQGTSYKTRSASR KPDRLSASERKRKAKFRVIEGSKPSDPPEDPPRYH >gi|333605299|gb|AFDH01000090.1| GENE 8 5718 - 6668 1128 316 aa, chain - ## HITS:1 COG:BH2803 KEGG:ns NR:ns ## COG: BH2803 COG3872 # Protein_GI_number: 15615366 # Func_class: R General function prediction only # Function: Predicted metal-dependent enzyme # Organism: Bacillus halodurans # 1 312 1 308 325 349 56.0 3e-96 MSQSNTSIYGGQAVIEGVMFAGRNVHVTAVRKKDRTIDFLEVPKTEIGWVNKLKKIPLLR GIVGIIESSAKGAQHLNFSAESFAEEEEGEGKAPAKEEKSGFSLSMILGVAVVGVLSFLM GKVIFTLVPVILEQTLFGRFFQEHQIWHNIIEGLIKIVLLVSYIYFISLTPVIKRLFQYH GAEHKVISAYEAGVELNVRNVQQFSTLHYRCGSSFIVFTVIIGVIIYSFFTYDNMIDRII QRLVLLPVIIGVSYEVLRFTNSLREVPVLRFLGYPGLWLQKLTTKEPTDDQVEVSIASFN RMREAESRLTQSKASA >gi|333605299|gb|AFDH01000090.1| GENE 9 6828 - 7385 692 185 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_2085 NR:ns ## KEGG: GYMC10_2085 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 37 184 13 160 165 145 50.0 7e-34 MVLHTQGTAAAGNGKSAGGQRKSFSQNGGAAGDEKKTNRAFFALYLGLFAGVIWGAVKII EYIFKFTRIIPAFLAEPFYRHDFLLTWQGILVGWLFFIVFSILASFIYMFLFGKVKGPWM GVGYGIGWWCLLYLAIGPWTGMMGWLYYSDWNTILTDFCLFLLWGMFIGYSTAFEFTEEH SRKPA >gi|333605299|gb|AFDH01000090.1| GENE 10 7480 - 7923 486 147 aa, chain + ## HITS:1 COG:BS_yqhS KEGG:ns NR:ns ## COG: BS_yqhS COG0757 # Protein_GI_number: 16079503 # Func_class: E Amino acid transport and metabolism # Function: 3-dehydroquinate dehydratase II # Organism: Bacillus subtilis # 1 139 1 139 148 173 62.0 8e-44 MNKVLVLNGPNLNMLGIREPAVYGRMSLKDIETAMTEIAGTLDLQLTFHQSNHEGQLIDW IHEAHGTMDGILINPGAFTHYSYAIRDAISSVGLPAVEVHLSNIHKREEFRHRSVLAAVM VGQIAGFGAFGYELGLRALHQHFVEAR >gi|333605299|gb|AFDH01000090.1| GENE 11 7928 - 8998 978 356 aa, chain + ## HITS:1 COG:BS_yqhT KEGG:ns NR:ns ## COG: BS_yqhT COG0006 # Protein_GI_number: 16079502 # Func_class: E Amino acid transport and metabolism # Function: Xaa-Pro aminopeptidase # Organism: Bacillus subtilis # 5 356 2 353 353 394 55.0 1e-109 MQDKRLERLRRQLTQQGIPAVLVTNAINRRYLTGFTGSAGIVLVTGGRAVLITDFRYMEQ APKEAAGYEIIDHRGKIGRTILDILGKESIKQLGFEENDLTYSAYSGYTGDLQGVELIPT GGIVEKLRIVKDESELQIMQEAADLADRTFSYILTRLRTGVTEKQIALEMEIFIRENGGT SSSFDTIVASGERSALPHGVASDRVLQPNEFVKLDFGALYKGYCSDITRTVVLGQPSDRH KEIYGIVLEAQLNCVGSLKPGMTGSDGDALCRDIIARYGYGDNFGHSTGHGLGMEVHEQP RLAKGFAGVLEPGMVVTVEPGIYIPGFGGVRIEDDVVIEQSGIRLLTHSTKELITI >gi|333605299|gb|AFDH01000090.1| GENE 12 9025 - 9582 620 185 aa, chain + ## HITS:1 COG:BH2799 KEGG:ns NR:ns ## COG: BH2799 COG0231 # Protein_GI_number: 15615362 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) # Organism: Bacillus halodurans # 1 185 1 185 185 261 69.0 8e-70 MISVNDFKTGLTIVVDNDLFTVIDFQHVKPGKGAAFVRSKLKNLRNGNVVEKTFRAGENV GRAHIENREMQYLYASGSEYTFMDTETYDQISLEEAQLKWELNFLKENMNINIMSYQGEI LGINLPNSVELKVVETEPGVKGNTAQGATKSAKVETGLNVQVPLFINENDVLLIDTREGK YISRA >gi|333605299|gb|AFDH01000090.1| GENE 13 9808 - 10839 1388 343 aa, chain + ## HITS:1 COG:BMEI0015 KEGG:ns NR:ns ## COG: BMEI0015 COG2984 # Protein_GI_number: 17986299 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, periplasmic component # Organism: Brucella melitensis # 41 331 18 305 314 219 46.0 4e-57 MKMKPFVTLLLAASLVTAAGCGKQAAPESTGGGASTAPEGKKVKIGIMQIVEHPSLDAAR QGFIAALKDNGYEDKKTAEIDYQNAQNDMNNNTSIAQKFAADKKDLVLGIATPSALAAAQ TVKDAPVLFTAVTDPVDAKLVKSIEKPGGNVTGTSDLDPKAVDQLTEFVGKHFPNVKTIG IVANEGERNSQVQIKQATEAFAKHNIKVVKASPSNSSEVKQAAESLIGKADALYVPLDNT VVSALNAVIQVAEQGKKPLFVGENDSVKAGGFAGYGSNYYDLGYTTGLQAVEILKNGKKP SDIPVGYPKKLDLAINMKAAKNMGIEVTDAMKAEVKEKANLFE >gi|333605299|gb|AFDH01000090.1| GENE 14 10907 - 11827 1095 306 aa, chain + ## HITS:1 COG:Cgl2197 KEGG:ns NR:ns ## COG: Cgl2197 COG4120 # Protein_GI_number: 19553447 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Corynebacterium glutamicum # 11 276 3 277 296 237 54.0 2e-62 MTIDWGTVAQGSLEQGLFYAIMALGVYITFRILDFPDLTVDGSFTTGASIAAVMITHGVS PLLATLAAFAGGAVAGLVTGLLHTKGKINALLSGILMMIALYSINLRIMGKATISLFGSE VLLDKELILYILPIVVVAIKLALDWFLHTELGLALRATGDNKRMIRSFGVNTDNTIILGV SLSNGLVALSGALFAQYLEFSDMQMGVGMIVIGLASVIIGEALFGAKTIIRATFAVVLGA IIYRFVVAIALQVGLESTDMKLMTALIVVIALTLPKIQGSLKQRAVIRKRKAELAEKSGG VEHASH >gi|333605299|gb|AFDH01000090.1| GENE 15 11814 - 12608 902 264 aa, chain + ## HITS:1 COG:Cgl2196 KEGG:ns NR:ns ## COG: Cgl2196 COG1101 # Protein_GI_number: 19553446 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, ATPase component # Organism: Corynebacterium glutamicum # 1 264 1 263 263 287 61.0 1e-77 MLHIDRASKIFNPATPDEKVALSDIQLHLAQGDFVTVIGSNGAGKSTLMNVISGVMQPDY GVVRIEGKDITSLSEHKRSRWIGRVFQDPMAGTAPTMSIQENLAMAHTRAGKRGFGLGVT KQRKLAFKEHLERLGIGLENRLNAKVGLLSGGERQALSLLMATFTQPNILLLDEHTAALD PSRAELITRLTKQIVEESKLTTLMVTHNMEQAIRLGNRLIMMDKGRIILDIPAASKQDLT VEKLLREFEKIRGEKFVDDRVVLG >gi|333605299|gb|AFDH01000090.1| GENE 16 12812 - 14068 1293 418 aa, chain + ## HITS:1 COG:BS_lysC KEGG:ns NR:ns ## COG: BS_lysC COG0527 # Protein_GI_number: 16079899 # Func_class: E Amino acid transport and metabolism # Function: Aspartokinases # Organism: Bacillus subtilis # 1 403 1 401 408 389 56.0 1e-108 MSLIVMKFGGSSVGDAERMKRVAKRIVDRKREGHRCVVVVSAMGDTTDDLIDLSRQLYDG APPAREMDMLLTTGEQVSVALLSMAIQNLGEPAVSYTGWQSGMITEDLHGKARITDIQPH RIHTALEKDNVVIVAGFQGMTEDGEITTLGRGGSDTTAVALAAAIHADLCEIYTDVDGIY TTDPRVVKNARKLKEISYDEMLELANLGAAVLHPRAVEYAKNYNVALVVRSSFTQNEGTY VKEEAEMEQGIVVRGIAYDKNIARISILGVPDKPGQLAKVFTSLAAQQIDVDIIVQSGVL NGLADFSFSVSLSDRDKALQTIEGIRGEIGFREVTSEGDLVKISIVGAGMVSTPGVAAKM FDELSKIGVSINMVSTSEIKISCVIEGKLLAEAVQVLHTAYGLDAQEQVFVGGPQDRR >gi|333605299|gb|AFDH01000090.1| GENE 17 14237 - 14701 546 154 aa, chain - ## HITS:1 COG:yeaL KEGG:ns NR:ns ## COG: yeaL COG2707 # Protein_GI_number: 16129743 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 15 143 17 145 148 83 33.0 2e-16 MNGDLLLVILIIVGLIGRSPIITTAACVLLVVKLISLDRYLPAIERRGLELGLLFLTMGV LVPFASERISYKDILTVFTTWPGILALSGGAIATYMNGKGLDLLKIDPQLIVGLVIGSIF GIIFMRGIPVGPLMAAGITAVLLKIFTFVADRIS >gi|333605299|gb|AFDH01000090.1| GENE 18 14798 - 15535 699 245 aa, chain - ## HITS:1 COG:CAC3233 KEGG:ns NR:ns ## COG: CAC3233 COG2045 # Protein_GI_number: 15896479 # Func_class: H Coenzyme transport and metabolism; R General function prediction only # Function: Phosphosulfolactate phosphohydrolase and related enzymes # Organism: Clostridium acetobutylicum # 1 226 1 227 235 142 33.0 7e-34 MRIDVIPSLSEVRSELLAGRTAIVIDVLRATTTIVAALESGSAGVLAAESVQQAVMLRGK RDVLGGERRCRRIPGFDLGNSPLEYTPEAVGGRRVVLTTTNGTRALQKAAPADKIVAAAL LNGEACARAAAGWKRDIALLCAGTAGAFCFEDGLCAGLIVSALQRLCGSAADVSDLGRSL AACYERHADDPAAPLAACDSGRRLASIGCEADIAFAARVNVSDIVPLLRDDVLVPWAPAR EHLSR >gi|333605299|gb|AFDH01000090.1| GENE 19 15525 - 16370 833 281 aa, chain - ## HITS:1 COG:MTH1674 KEGG:ns NR:ns ## COG: MTH1674 COG1809 # Protein_GI_number: 15679668 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Methanothermobacter thermautotrophicus # 20 261 11 253 258 196 40.0 3e-50 MEESSCKKWHPTLADPTGCRQSKPRALGKTMVMDKGLGLNAYDDLLQAAGEHVDYIKLGF GTSPLYPRELLRHKIERAKVLGIDVYPGGTFLEVAVQEGLISSYFDTVAALGFTCVEISD GTIELDRSLRSELIVRGIEAGLKVITEYGKKCWGSSVEAEALVATVTGDVEMGAELVTIE ARESGIGVGIFDENGACKDEELNGVLRSVPSPDILLWEAPLKNQQIHLLELLGPDVHLGN VAPADVIALEALRRGLRSDTLHFGERLRKSAREEGARVHAD >gi|333605299|gb|AFDH01000090.1| GENE 20 16518 - 16784 446 88 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_2090 NR:ns ## KEGG: GYMC10_2090 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 88 1 88 88 89 62.0 6e-17 MINKIVLSMASLRLLSGSLEIIAALLMIRFNQIEKALLVNTGLAMAGPLILLATTTIGLV GIAEKLSFGKMLWVVAGVSCIFIGILKK >gi|333605299|gb|AFDH01000090.1| GENE 21 16854 - 18047 707 397 aa, chain + ## HITS:1 COG:BS_spoIIIAA KEGG:ns NR:ns ## COG: BS_spoIIIAA COG3854 # Protein_GI_number: 16079499 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 9 371 8 299 307 256 42.0 7e-68 MLASVFAHLPASIRGILESLPAHLRSGLEEIRIRQDRPLEIVFDRRCAFVTREGLTDADA SRAYRPSREECKSLLELLTRHSFYSFEEELKRGFITIPGGHRVGLAGRVVLEGGNVKHIR DVSSFNIRIARELPGAGKPVLPHLLDREADTVHHTLLISPPQLGKTTLIRDLARMISSGE TPLPAAGGPGAGPCGNPGGGPGLPGGPGSTRTSSTGSGLEAGSREPARRPSAPDRPQRRA GWKVGIVDERSEIAASERGVPRFDLGPRTDVLDACPKAEGMMMMIRSMSPEVLIVDEIGR HEDAEAIREALHAGIRIIATAHGRDLGDVKRRPVLRELLESGVFGRYVILGRSAAGGRLV QVLDGDGRQLAVFGAYNAPAEGKPSGWETLFSTGGRG >gi|333605299|gb|AFDH01000090.1| GENE 22 18052 - 18573 568 173 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_2295 NR:ns ## KEGG: Pjdr2_2295 # Name: not_defined # Def: stage III sporulation protein AB # Organism: Paenibacillus # Pathway: not_defined # 3 172 2 171 172 157 51.0 1e-37 MWVKLAGAALVLGAGAGFGFAKARRYRRRPQQIREMIQALQRLETEIVYGSTPLPDAIAT LSEQTRAPLAGVFREVADRLSEPQDDTLSAIWRDAVQHGWRNSAMKPAELQVVLRLGQTL GASDRTDQAKHLRLSVLQLQAEETTAAEEQKRYEAMWKSLGVLVGALIVILMY >gi|333605299|gb|AFDH01000090.1| GENE 23 18589 - 18792 361 67 aa, chain + ## HITS:1 COG:no KEGG:BH2795 NR:ns ## KEGG: BH2795 # Name: spoIIIAC # Def: mutants block sporulation after engulfment # Organism: B.halodurans # Pathway: not_defined # 1 67 1 67 68 80 74.0 2e-14 MNVDVNAIFQIAGIGIIIAMIHTVLKQMGKEDMAHWVTVIGFVVVLFMVVRLLDNLFQEI KTIFLFQ >gi|333605299|gb|AFDH01000090.1| GENE 24 18803 - 18955 104 50 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MEIIQIVGLGLVATVLILIIKEQKPMFAFLLAAFTGILIFFSDRQNRFGH >gi|333605299|gb|AFDH01000090.1| GENE 25 18957 - 19193 208 78 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_2297 NR:ns ## KEGG: Pjdr2_2297 # Name: not_defined # Def: stage III sporulation protein AD # Organism: Paenibacillus # Pathway: not_defined # 1 77 53 129 131 84 71.0 2e-15 MLHNLAQQSGVNMVFLKTILKIIGIAYIAEFGAQIVRDAGQESIASKIELSGKILIMVMA IPIITVIIETVIKLFPST >gi|333605299|gb|AFDH01000090.1| GENE 26 19245 - 20444 1527 399 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_2298 NR:ns ## KEGG: Pjdr2_2298 # Name: not_defined # Def: stage III sporulation protein AE # Organism: Paenibacillus # Pathway: not_defined # 28 399 40 412 412 431 65.0 1e-119 MAQQLSHRTWTTLVLFVALFLSFLSHTGAQNLNPANPIDTLVKEQTNQLDTESVEKFWDK LMKEYGGYFPDNRPPSFSDLITGAKTFDFSNLWKGALKYLFHEIVVNGKLLVSIVILTVF SMLLETLQTSFERNNVSKVAFVVSYLVLLIIAVNSFQVAIEYANGAISSMIQFMIALMPL LLSLLASSGGITSVAILHPLIVFMIHTIGTVIYVFVFPLLFFSAVLHIVSSMTDKYKVTQ LAKLLQKIAIGTLGVFVTVFLGVISVQGSMGAVTDGVTLRTAKYIAGNFIPIVGRLFSDA TETVLGASLLVKNAVGLTGVVIVILLCAFPAIKILVLALIYHICAAVMQPLGDSPIIACL STIGKSMVYVFAALSAVGLMFFLALTIMITAGNIAVMVR >gi|333605299|gb|AFDH01000090.1| GENE 27 20587 - 21369 840 260 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_2299 NR:ns ## KEGG: Pjdr2_2299 # Name: not_defined # Def: stage III sporulation protein AF # Organism: Paenibacillus # Pathway: not_defined # 3 259 4 242 242 75 29.0 2e-12 MDWLGGWLKTVVALILLATFIELMLPTNKMQRYVRTAMSLFILLTLLSPVLQLTRKNWDP ARLLAEAQLGQQLGGGAAGGRQTPAGAGPSGQPASLQAVMEQADRLQAGSREQAVRLLEE KLAAEMRQTLQNETPYPIRDIRVKTAVDGQGAASVASVELTLDGAASPAAEPDEYGSAPA GEAGGSGMTPVKPVAPIAPVDVRIGGASGPGGRAVSAQTGEQPSPAQREAERKLAKAAEL GWKVDPSHISVQWTKEQSKL >gi|333605299|gb|AFDH01000090.1| GENE 28 21413 - 22054 763 213 aa, chain + ## HITS:1 COG:no KEGG:PPSC2_c3231 NR:ns ## KEGG: PPSC2_c3231 # Name: not_defined # Def: stage III sporulation protein ag # Organism: P.polymyxa_SC2 # Pathway: not_defined # 1 210 1 211 213 177 42.0 3e-43 MGFWKQWRSKWFGTGEDGKRSNSFLWIVLLGLVGAALMILSSFLNFKEVEPAGDSRASPS TQPGKETFMGGAAKDKTPFREYEEAYESRLRDILRKVVGVGDVEVLITIESTEEIVVEKD SKENQQLTTEKDTNGANRNISQVTKEGKVVLYQVSGDQQPLVVKTIKPKVSGVLVVAKGA EDLTVKKMMIEAVARGIDVPVHRISILPRKTAE >gi|333605299|gb|AFDH01000090.1| GENE 29 22152 - 22925 1133 257 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_2301 NR:ns ## KEGG: Pjdr2_2301 # Name: not_defined # Def: mutants block sporulation after engulfment (stage III sporulation) # Organism: Paenibacillus # Pathway: not_defined # 1 257 1 209 209 80 31.0 4e-14 MNAKRQTIWLVSMLSLMVVLSAYYLFTEDVSKVDVASTAPKADEVKIDLSQVSPEQAVAE AGKASADKAAGAKAGDTKTTADAKTDAKTDTKTDAKAEAKAGDGKAQDSKTGATASKDDK DAAAAPASAEAKVSQQTQASSKSGRDYLTKLQLDRQDALSKKTEELLTLITDKNQSSDAV SKAQQELQQIEDTNTRVTNVEDVLSKDYPNAVLTQDGSKWKVTVQSDKLEKSQAVSIVET VMKELKVGPEISVQYVK >gi|333605299|gb|AFDH01000090.1| GENE 30 23084 - 23578 480 164 aa, chain + ## HITS:1 COG:BH2788 KEGG:ns NR:ns ## COG: BH2788 COG0511 # Protein_GI_number: 15615351 # Func_class: I Lipid transport and metabolism # Function: Biotin carboxyl carrier protein # Organism: Bacillus halodurans # 1 164 1 168 169 133 52.0 1e-31 MFKLSEIKELMKLMDQTSLQELEIENEGARLSIRKPNKTESVVVTAAPVQQAYAPVIAQA VPGSAHAQVASEAPKADEQKESDSTLHKIVSPMVGTFYQASSPGSAPFVSKGSNVNEKSV VCIVEAMKLMNEIEAEVKGEIVEILVENGQLVEYGQPLFLVKPE >gi|333605299|gb|AFDH01000090.1| GENE 31 23597 - 24955 1404 452 aa, chain + ## HITS:1 COG:BH2787 KEGG:ns NR:ns ## COG: BH2787 COG0439 # Protein_GI_number: 15615350 # Func_class: I Lipid transport and metabolism # Function: Biotin carboxylase # Organism: Bacillus halodurans # 4 447 3 447 452 645 71.0 0 MGFQKVLIANRGEIAVRIIRACRELGIQTIAVYSEADRDALHVRLADEAYCIGPTPSKDS YLNFTNIMSVATLTDTDAIHPGYGFLAENADFAEICESCNITFIGPSPEAITKMGDKAVA KQTMKEAGVPVIPGSDGLIEDLDEAISLGRDIGYPLIIKATAGGGGKGIRIAESEDMLIQ HIMTAQQEAQLNFGNSGVYLEKYLTGMKHVEIQIIADKHGNAVHLGERDCSVQRRRQKLV EEAPCPTLTPEIRQAMGEAAVRAAKAVNYSGAGTLEFLLGPDGNFYFMEMNTRIQVEHPV TEYVTGVDLIKEMIRAAEGNPLPFTQEDIQINGWSIECRINAEDPERNFMPSPGRINFYL PPGGIGVRVDSAAYPGYVIPPHYDSMIAKLIVWGATREEAVNRMKRALAEFEVDGVHTTI PFHLKLLNHRKFLSGDFDIKFLEEHDVNDPES >gi|333605299|gb|AFDH01000090.1| GENE 32 25041 - 25451 613 136 aa, chain + ## HITS:1 COG:CAC2085 KEGG:ns NR:ns ## COG: CAC2085 COG1302 # Protein_GI_number: 15895355 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 4 128 1 126 131 109 50.0 2e-24 MTMIAADYEKTDMGTIQIAPEVIEVIAGLATVEVEGVAGMSGGFVNGITELLGRKNFAKG IKVNVGQREAAIDVSIVMEFGHRIPEVAGKIQQNVKLAIESMTGLSVVEVNVHIHDVQFK TAEKPVEEDSAALRVK >gi|333605299|gb|AFDH01000090.1| GENE 33 25531 - 26097 413 188 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_2102 NR:ns ## KEGG: GYMC10_2102 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 188 1 179 179 183 55.0 3e-45 MVKLLDRLLLFLFSLAIMFLSAIAVLAAFQLIPMRSTDYFLQDVFDSGFTLSKAWVIGAG IVIFLISIRFFYISVRRSRTQAPSIDQRSEYGDIRISVETVENLSLKAAGRSRGVRDLRA RVKVSEAGLEIGIRTVVDGETSIPELTEEIQSAIKNHVEEITGIPVSGVSVYVANIVQNT PTFKSRVE >gi|333605299|gb|AFDH01000090.1| GENE 34 26112 - 26342 380 76 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_2103 NR:ns ## KEGG: GYMC10_2103 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 2 76 3 77 77 62 45.0 5e-09 MWRKLWQEHPGTITGGGVGLVLGLVYLFFGFWDMLIFAFIVFLGYYIGKKVDRGEDLWLP FQSLWQFLTQKWRMFR >gi|333605299|gb|AFDH01000090.1| GENE 35 26477 - 26908 620 143 aa, chain + ## HITS:1 COG:BS_yqhZ KEGG:ns NR:ns ## COG: BS_yqhZ COG0781 # Protein_GI_number: 16079488 # Func_class: K Transcription # Function: Transcription termination factor # Organism: Bacillus subtilis # 1 131 11 128 131 99 39.0 3e-21 MQSLYQIDMNGVSAAEAVNVAVHEAENDNEAQVDHKEKIMPEYIRELVDGTLSNRERIDQ LLAGYLKGWKMDRLSRVDREVLRLAAFEMLFQEDVPPKVVVNEAIDLAKHFGTDDSGKFV NGVLGKMIKDVDALRENIRSGKE >gi|333605299|gb|AFDH01000090.1| GENE 36 27057 - 27929 962 290 aa, chain + ## HITS:1 COG:BH2784 KEGG:ns NR:ns ## COG: BH2784 COG0190 # Protein_GI_number: 15615347 # Func_class: H Coenzyme transport and metabolism # Function: 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase # Organism: Bacillus halodurans # 1 279 1 278 279 322 59.0 4e-88 MAAEVINGKEIVRSIREEIKQEVEELSTRGTTPGLVVIIVGDDQASHVYVNNKEKACAQV GIQSHVHRLPADTSQEELVKLIHEYNRNPEFHGILVQSPLPGHINEEQVVDEITPEKDVD CFHPVNVGNLMIGKEGMLPCTPAGVMEVLKKIGVSPAGKHAVVVGRSNIVGKPMAMLLLR EHATVTICHSRTPNLQDITRQADILVAAVGKAGVIEDRHVKPGAVVIDVGMNRNAEGKLC GDVDFDAVKEIAGYITPVPGCVGPMTITMLLKNTLSSARRASNTGTEAGV >gi|333605299|gb|AFDH01000090.1| GENE 37 27933 - 29300 1317 455 aa, chain + ## HITS:1 COG:BH2783 KEGG:ns NR:ns ## COG: BH2783 COG1570 # Protein_GI_number: 15615346 # Func_class: L Replication, recombination and repair # Function: Exonuclease VII, large subunit # Organism: Bacillus halodurans # 4 453 5 453 458 412 48.0 1e-115 MSERAVLSIKDLNRYIKMKLEGDNRLQDVWVRGEISNFTHHSSGHMYFTLKDKDSRLKSI MFASYNQRLPFRPKEGTMVIARGNVSVYERDGQYQFYVTQMQPDGIGGLYLAFEQLKQKL DSEGLFRTERKKPIPRMPKAVGVITSPTGAAVRDIIITLQRRFPNVPILLYPVLVQGAQA APSIVRAIETMNSLGEVDVLIVGRGGGSLEELWAFNEEIVARSIFASAIPVISAVGHETD FTIADFVADLRAATPTAAAELAVPHHLELKQQMAHLGQRLHRGLLQQLQRRQDRLERLRR SPYLTNPHRQLLQHPAQRLDRLGEQLSFRMRQLVGRAGDRRMRLERTLSGFNPQEQVRYA RKRVEGAERALTLAMQGVARGRRQQLVSTLRHLDALSPLKVMQRGYSLVYDEKEKRVLNS IEQVQIGDMVRVQLTDGRLDCHVWAMEEKTNGERK >gi|333605299|gb|AFDH01000090.1| GENE 38 29284 - 29559 382 91 aa, chain + ## HITS:1 COG:no KEGG:PPE_02839 NR:ns ## KEGG: PPE_02839 # Name: xseB # Def: probable exodeoxyribonuclease VII small subunit (exonuclease VII small subunit) (EC:3.1.11.6) # Organism: P.polymyxa # Pathway: Mismatch repair [PATH:ppy03430] # 7 89 1 83 86 80 61.0 2e-14 MGNESKLQEETAISFEEAMDKLEGIVAKLESGDVPLEQAIELYQEGMKLSHLCGQKLETV EKKIEMLVESEAGLSKKPFGANMIEDKGESR >gi|333605299|gb|AFDH01000090.1| GENE 39 29556 - 30458 982 300 aa, chain + ## HITS:1 COG:alr0213 KEGG:ns NR:ns ## COG: alr0213 COG0142 # Protein_GI_number: 17227709 # Func_class: H Coenzyme transport and metabolism # Function: Geranylgeranyl pyrophosphate synthase # Organism: Nostoc sp. PCC 7120 # 6 277 17 287 309 248 49.0 1e-65 MNTDMNIQEYIASYAKEVEGELRELFPRLWDIPDVLRQSAQYSIDAGGKRLRPILVLAAA EALGGRKEAAMPVACAIEMVHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEAMAILAGDA LLTQAFYSASQARRHGVPAEQVLNIVEELAEYSGARGMVGGQVADMKGEQGITELSGLEY IHQHKTSDLIIFSLRAGGRIAGADDKQLEALTAFGRSIGLAFQIQDDILDVTGTQEKLGK AVGSDEKQQKVTYPFFIGMEESERRVALLTDEAKTAIAGGVLPKPQRLLELADYLMKRDR >gi|333605299|gb|AFDH01000090.1| GENE 40 30553 - 32454 1835 633 aa, chain + ## HITS:1 COG:BH2779 KEGG:ns NR:ns ## COG: BH2779 COG1154 # Protein_GI_number: 15615342 # Func_class: H Coenzyme transport and metabolism; I Lipid transport and metabolism # Function: Deoxyxylulose-5-phosphate synthase # Organism: Bacillus halodurans # 1 628 1 629 629 819 63.0 0 MLLDHINQPEDLKRLSTAELEQLAGEIRQFLVEKLSASGGHLSSNLGIVELTIALHTLYD SPRDKFIFDVGHQAYVHKILTGRKDRFDTLRKYKGMCGFIKRAESDHDVWEAGHSSTSLS AAMGMAMARDLKGEDFRVFAVIGDGAMTGGMALEAMNHIGHEKKNLTVILNDNEMSIAPN VGAIHNYLSKIRSDKHYRKAKEEVESLLKKIPAIGGTLAKTAEKVKDSLKYLLVSGVWFE ELGFNYIGPVDGHNLPLLLETLKQSEKVEGPVLIHVITTKGKGYSPAEMDSHKWHGASPY KIESGQFLKAVGNPMYTEVFGNTLIELAEKDERVVAVTPAMPGGSGLMNFAARFPKRMID VGIAEQHAATLCAGMAAEGMKPVFAVYSTFLQRAYDQVVHDICRPKLNVMFAIDRAGFVG PDGETHQGVYDIAFLRNLPNMVLMMPKDENELRRMMRTGIDYNEGPIAVRYARINGLGVP MDENPQPIPIGTWETLTEGDTMAVLAVGPMNQVALEAADMLRKEGINLRVINARFIKPLD EAMLLQLAKEHMPIITMEEGSEQGGFGSAVLEFYAKQGIEGVRVRTMGVPDYFVEHGSIK EQRQEVGLTAEHLITQVHTLLPRKRQRSAGLNA >gi|333605299|gb|AFDH01000090.1| GENE 41 32576 - 33418 747 280 aa, chain + ## HITS:1 COG:BH2778 KEGG:ns NR:ns ## COG: BH2778 COG1189 # Protein_GI_number: 15615341 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted rRNA methylase # Organism: Bacillus halodurans # 3 243 2 242 272 322 66.0 4e-88 MATDKERIDVLLVEQGYFESREKAKAAIMAGLVFADEEPVDKAGMKISRAAALKVKGAVH PYVSRGGLKLEKALKQFNIDVKNAVMLDIGASTGGFTDCALQNGASYVYAIDVGYNQLDW SLRQDERVQVMERTNFRYLTPEELTGPSPSFATIDVSFISLKIILPPLKTMLGVKGETVA LIKPQFEAGREKVGKSGVIRDSEVHKDVLESVLGFAKEIGFYLKGLTFSPITGGEGNIEF LAYWTCNPEDPEKLEEPLQSLIDRVVPEAKAMFAKPETRY >gi|333605299|gb|AFDH01000090.1| GENE 42 33547 - 34017 491 156 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_2314 NR:ns ## KEGG: Pjdr2_2314 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 3 152 4 150 152 123 42.0 3e-27 MQHGDTLILILLLGLLAAWAGISFRKWLYEPYADSFQPVRMTDYNEVPEDDDVVELLIGA GFDVVGGKTKIPISMTLNQKEELYSRLFIDYFAEKEDNLYLVKVARERKPLEMTGSAIRD MLLVYSLLVPEAAGVLYVDMNGRKIKQITFHIEVFE >gi|333605299|gb|AFDH01000090.1| GENE 43 34014 - 34460 319 148 aa, chain + ## HITS:1 COG:BH2777 KEGG:ns NR:ns ## COG: BH2777 COG1438 # Protein_GI_number: 15615340 # Func_class: K Transcription # Function: Arginine repressor # Organism: Bacillus halodurans # 2 148 3 149 149 209 67.0 2e-54 MKGQRHVKIREIITGHEIETQDELVESLRTAGFNVTQATVSRDIKELHLIKVPLDDGRYK YSMPADQRYNPMQRLKRALSDHFINIDFTENLVVMKCMPGTANTICALIDNLEWNEIMGT ICGDDTILIICRTKDVSQKVVNQIMSLI >gi|333605299|gb|AFDH01000090.1| GENE 44 34493 - 36229 1849 578 aa, chain + ## HITS:1 COG:BS_recN KEGG:ns NR:ns ## COG: BS_recN COG0497 # Protein_GI_number: 16079480 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA repair # Organism: Bacillus subtilis # 1 576 1 574 576 473 46.0 1e-133 MLTELSIRNLAVIEYVHIGFKSGFHVLTGETGAGKSIIIDALSLIVGGRGSSELVRYGSE KAEIEAVFEIGEEHPVWTTLAQLGIEAAGEEQLLIRREVTASGKSSSRINGQLVNLTMLR EVGGWLVNIHGQHEHQSLLKSDEHIHWLDAYGDKEVGPNLAAYRESYDRYTKLRKELKAL QETSKQSLQMIDLYRFQVDEIAAASLKEGEDVTLAEEKSKLANAEKLYSSVAGSYDTLYG ASSGLDAIGKSIARIQDVAAIDSAGIAPLLEQMQSAFYQLEDAAYQLRDYRDDIEFNPER LDEIELRLDLIATLRRKYGDTIAEILAYSEKVSGELATIENKDEIIQKLQEKLDREVVQL TKAARKLSDSRKKIADRLAGEIETELRDLHMERTQFRVQVSHTPVPAGGGGLEIGDEPVK FTRDGIDLVEFLMAPNPGEPLRGLSKIASGGELSRIMLAMKSIFARLDQIPVLVFDEVDT GVSGRAAQAIAEKLSLLSRSCQVFSITHLPQVACMADVHFYIHKEVQGERTFTRVTDLDR RGRIEELARMLGGVEVTETTLHHAQEMLALADEKKSRN >gi|333605299|gb|AFDH01000090.1| GENE 45 36341 - 37675 1289 444 aa, chain + ## HITS:1 COG:BS_spoIVB KEGG:ns NR:ns ## COG: BS_spoIVB COG0750 # Protein_GI_number: 16079479 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted membrane-associated Zn-dependent proteases 1 # Organism: Bacillus subtilis # 26 430 25 416 425 378 50.0 1e-104 MKSNRRRRFIGLLLVFFVCILSVSAPFQSFASFPDELRLFSGQAKELRLSMPVNAMLTVE DPEIVKVNGNSRHSFQVNLKDPISLQSNQQGYTEMKLKLFGAIPLKTVKVNVVPDLKVLP GGQTIGVKIKSAGILVVGHHLVAVNEKQKISPGEEAKVQVGDLIVAINGSPSADVSKVFG LVNKAGQSKKPLELTVQRGHQRFELKLKPAYDVVDKSYRLGLYIRDSAAGVGTLTFYAPE QNVYGALGHVITDMDTQTPIVVGSGEVVHSNVTSIAKSQNGEPGEKHAQIFRDSKVIGTI EKNTPFGIFGKMEEAPEYSLSRTPIPVAFAEEVKEGPAQIYTVVNGQKVEKFDIEVVHVA KQGSPATKGMVIKVTDKRLLEKTGGIVQGMSGSPIIQNGKMIGAVTHVFVNDPSSGYGCF IEWMLQDAGILLRPESDAKGLKAS >gi|333605299|gb|AFDH01000090.1| GENE 46 37875 - 38669 885 264 aa, chain + ## HITS:1 COG:BH2773_1 KEGG:ns NR:ns ## COG: BH2773_1 COG0784 # Protein_GI_number: 15615336 # Func_class: T Signal transduction mechanisms # Function: FOG: CheY-like receiver # Organism: Bacillus halodurans # 1 122 1 120 120 164 64.0 2e-40 MQKIQVLLADDNREFTHLLSEFISEQEDMEIAGIAYNGNEVLRFMETQKDVPDILILDII MPHLDGLGVLEKLREMNLNPAPRIIMLTAFGQENITQKAVQLGASYYILKPFDMEVLTNR IRQLVGNQPAVTSTSSIKANVVQMPKSKNLDANITTIIHEIGVPAHIKGYQYLREAITMV YNNIEILGAITKTLYPAIAEKYKTTPSRVERAIRHAIEVAWTRGNIDSISFIFGYTVNIS KSKPTNSEFIAMVADKLRIEHKVS >gi|333605299|gb|AFDH01000090.1| GENE 47 39251 - 40090 425 279 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_2460 NR:ns ## KEGG: GYMC10_2460 # Name: not_defined # Def: coagulation factor 5/8 type domain protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 5 215 78 276 1470 91 31.0 4e-17 MTKDVYHTGTQAVQLEHLALSRTGLSQDVPITGGQTYKLSVWVKTKDVNSGIGVFVRTQF FKSIKGLDGKTQDDKIGSGPSTEELTGTQDWMKREVILSAPEEAKYIRLEPFFETGTGTV WFDDISLVKWNSVTGLALDQTNVTLEKLQTAVLTAKVTPENVSGLSLQWRVDNKDVVQVE AQGPLAVLTGLKPGKAIVTVMTDDGTFAATSEITVKEASIPGDLTNDGKITVGDLAMAAA HFGKDTNSPDWETVKAADVNGDHKIDRSDLMWFTERIFP >gi|333605299|gb|AFDH01000090.1| GENE 48 40125 - 44441 170 1438 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764957|ref|ZP_02172007.1| ribosomal protein L10 [Bacillus selenitireducens MLS10] # 1283 1430 1349 1500 1511 70 29 3e-11 MKKFIWRYAVIALTIVALIFTSYPVSVQAQQPDPIDSMRDKWLAFLTGGQQIDLNDEDIR QAVETNAKKVTNDQKTGFWDLLLKDPARKSLWADYASTTDSSHITLSYNRLKDMAIAYST QGSNLYRNEQLKQDIMAGLDWMYTNRFNENKAKYNNWWDWEIGSPLSLGDIMTLMYDHLS PEQVARYTRTIDKFIPDPTLRLGSTLKETGANLLDKALAVLIRGVIGKSETKIVQARGSI SSVFPPVTSGDGFYADGSFIQHNNIAYTGSYGSVLLGDMAKLLTILNDSPWPIQDPNLAN TYDWITNSFEPLIYSGHMMEMVSGRAVSRYNNNTRGTAWTINRMAQFAPPELAARYKSMV KEWVLSDTSMSNKYEGMPIRDLVLFKALMKDTSVVPRGDLIVHHQFSAMDRVVHARKGYA YAISMSSSRISNYEGGINGEHTKGWYTGDGMTYLYNNDAAQFRDAFWPTVDSYRMPGTTS DGLPRTGSKVTSKSWVGGASMDQLYGAAGMDLAPPGSKLTGKKSWFMFDNEIVALGAGIT TSDSRKVETIVENRMINSAGDNKLIVNGETMPSNLGWSKNLTGVKWANLQGTAAGADIGY YFPETANVSALREARSGSWRDINPTGPTDTITRNYASLAIDHGTKPTDQSYSYVLLPTLN AAATQSYSENPDVHILSNTAKIQAVQETKLGLTGIHFWVPGTLDRIRAYQPVSLMMKEKG DELTISVSDPTQSQSKVKVELAAAASQVLANDPSVKVLRTLPTLQLEVDTRGSLGKSHTI QLKINPDQEVELPAETDYEPDPAAKVRIPVTEDTFVNGGTDANNNFGTRGFLNIRNGSGN TDRKVFLKFALPSSMQDIHSVSLNVYGETKDGSGNISDIGVYEVPDDSWSEKTLTFANKP APGKQIDVATFTTPEQWRKFDVTPFVMAQQQGDKVASFALQQVGSNLASTIRSRKSEDGK YQAYLEVLLKDTKAPTTSVRVDGNSGADQENYKDVTLHFTAVDDPNGWGVLRSEYRINGG KWMAVKAGQVVIREKGVQNIEYRSIDKASNMEEAQKLTVVLANADTELSGNQSVVKGEPL IVTYRIKKAVSDMYAHDLTLDYDAHVLEFVSAESMQRGVSILKSKAEDTGRLSFVIAGEG QEIQGNADLLKLTFKVKKATDAVSGKIEVAQAILADKRGSEMAVTPSSLHFSVQASTEGP GPVKPNPGDNGNGNGNGTDNGNGNGNGNGSGNGSGNGTDNGTGTDNGGPVQPEIPTDNTE AVVLNDLNGHWAEEKIQEAAKKGLILGYPDGSFQPDKKITRAEFTSLLVRGLKLNEETKL TFSDHDLKDHWAKSDIAKAVKKGIISGYEDNTFRAEQDITRTELTVMAAKSLNLAEESPD LISFVDQADIPVWARGWVAAAVSKGLVTGRDNQTFAPLAPATRAEAVVILLNLLSLRK >gi|333605299|gb|AFDH01000090.1| GENE 49 45351 - 45527 133 58 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|327439848|dbj|BAK16213.1| ## NR: gi|327439848|dbj|BAK16213.1| coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase [Solibacillus silvestris StLB046] # 1 55 274 328 337 88 72.0 2e-16 MKQNMIIGNPHELKRKLMELQTKYQADEIMINTITYSPKDRIHSYKLIAKEIFSKENL >gi|333605299|gb|AFDH01000090.1| GENE 50 46368 - 46661 226 97 aa, chain - ## HITS:1 COG:no KEGG:BMQ_2667 NR:ns ## KEGG: BMQ_2667 # Name: not_defined # Def: hypothetical protein # Organism: B.megaterium_QM_B1551 # Pathway: not_defined # 1 91 2 92 94 96 58.0 4e-19 MKKMFLNGTLIYLSSYQEEKTNGLYKVSVDFNVTSEDYHDISTLLYSETFDVEIPERDLT FRGTIHEYSTSITNLYVKDQVGQYKLTLMEVGHGAKG >gi|333605299|gb|AFDH01000090.1| GENE 51 46777 - 47262 45 161 aa, chain - ## HITS:1 COG:RSp0908 KEGG:ns NR:ns ## COG: RSp0908 COG2141 # Protein_GI_number: 17549129 # Func_class: C Energy production and conversion # Function: Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases # Organism: Ralstonia solanacearum # 1 155 159 318 319 140 41.0 1e-33 MRKVWNEEFPEIYSPRLNLQGGDLLPKPELKDIPILVTGHSTQTPKWIAENSDGWFYYPR NINNQAALIKEWRTLTNIFKPFSQSLYIDLSENPNEDPSPIHLGFRTGHQFLIDYLNALK EIGVNHLGFNLKYGQRPVEEVIQELGEEVVPFFPALSNKEV >gi|333605299|gb|AFDH01000090.1| GENE 52 47307 - 47540 158 77 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSQVLEMQDSYTIHGFFLVTWLPIQNRFHWVPQVLSQRYAIHCTWQKQQLLLIEFLGNDL FLELLRVIALASFQRFQ >gi|333605299|gb|AFDH01000090.1| GENE 53 48021 - 48320 57 99 aa, chain - ## HITS:1 COG:mll3509 KEGG:ns NR:ns ## COG: mll3509 COG0640 # Protein_GI_number: 13473030 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Mesorhizobium loti # 1 99 1 99 100 101 47.0 3e-22 MEQIEIFKALSNEARLQILEWLKNPALYFSPQEGIDLEEIGVCVSQITEKLGMNQSTASQ YLAILQRAGLITATRIGKWTYYRRNEDAINQVGLFLKKK >gi|333605299|gb|AFDH01000090.1| GENE 54 48814 - 49167 245 117 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MALKYFNYTMLFIADEPENQQTRNFTLKQYVDFVKKKAAISNDDILDEKQVSVFGFDAVQ LTYKNHLDWNSRMDTLIVFKSDSQFHTIRNSSYTETYKSSLENFEQLMETMKFNEKQ >gi|333605299|gb|AFDH01000090.1| GENE 55 49231 - 50154 941 307 aa, chain - ## HITS:1 COG:CAC0293 KEGG:ns NR:ns ## COG: CAC0293 COG1619 # Protein_GI_number: 15893585 # Func_class: V Defense mechanisms # Function: Uncharacterized proteins, homologs of microcin C7 resistance protein MccF # Organism: Clostridium acetobutylicum # 8 305 6 304 306 218 36.0 2e-56 MAIKPGALLPGDTVGIVTLGSPLSAETIQARIAYLQSLGLNVLLGRYVYSANGYLAGTDR ERAEDFMSVYADPRVKMILPTRGGVGVADILPYLDYAFIRQNPKIVTGYSDITVLLNALY KLADLITFHSLLLIDFRPDTPPYNFEQFFTATSSVVAPRPIANPPGIPLIGRVPGNVSGP IIGGNLTSLVGSLGTPFEVDTTGKILLLEETHEPVNTVYRYVEQLRLAGKLQACVGIVMG ECTNCQTAYGKTYEDLISEVIVPLGKPLLTNLASAHGFYKAAIPIGANVNLNASAAALTL LEAAVRY >gi|333605299|gb|AFDH01000090.1| GENE 56 50483 - 50947 441 154 aa, chain + ## HITS:1 COG:no KEGG:RBAM_008290 NR:ns ## KEGG: RBAM_008290 # Name: yfjM # Def: YfjM # Organism: B.amyloliquefaciens # Pathway: not_defined # 6 142 4 141 166 135 48.0 6e-31 MQSDTLCIIPPGKRKIWDRDATRGPASARDAYTGTLNRKARAYAEASGCDWVILSAKHGF LLPADTVPGNYDTAFGTTNAGIISADELARQWEEKDLHTYSRVEVLGGKKFRPIIGALAG SAAVYFPLENSRGIGDMLHLLDAWTVRMLKTDDK >gi|333605299|gb|AFDH01000090.1| GENE 57 51332 - 53164 1817 610 aa, chain - ## HITS:1 COG:BH3930 KEGG:ns NR:ns ## COG: BH3930 COG0043 # Protein_GI_number: 15616492 # Func_class: H Coenzyme transport and metabolism # Function: 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases # Organism: Bacillus halodurans # 1 607 1 607 610 1016 78.0 0 MYAHLEDCIADLEKNGHLIRIKEEVDPYLEMAAIHLKVYEAGGPALLFEKVKGSKFQAVS NLFGTLERSKFIFRHTWQDAENIIALRNDPVKALKQPFKTAGNGLAAFKALPLKKSGLPA DFREISISDLPLIQHWPMDGGAFITLPQVYSEDPEKPGIMNSNLGMYRVQLTGNDYETDK EIGLHYQIHRGIGIHQDKANKQCAPLKVSIFVGGPPAHTLSAVMPLPEGLSEMTFAGLLA GRRFRYSYADGYCISHDADFVITGEIHPGETKPEGPFGDHLGYYSLTHPFPVLRVHKVYA RENAIWPFTVVGRPPQEDTSFGELIHELTGDAIKQEIPGVKEVHAVDAAGVHPLLFAIGS ERYTPYQQVKQPAEILTLANRVLGTGQLSLAKYLFMTAEDKQPLDTHKEKEFLAYILERI DLRRDIHFYTNTTIDTLDYSGTGLNTGSKVLFAAYGDKKRDLCTEIPDALTELSPFGEAR LVMPGVVAMRGPAFETYEKASLELEHLCGAIAGKGPLPGCPMIVLCDDSEFLSADFANFL WATFTRSNPSHDIYGVNSAYAYKHWACDNVIIDARVKPHQAPPLVPDPEVERNIRRLFAP GASLGGVVKS >gi|333605299|gb|AFDH01000090.1| GENE 58 53482 - 53931 451 149 aa, chain + ## HITS:1 COG:no KEGG:ABC0230 NR:ns ## KEGG: ABC0230 # Name: not_defined # Def: hypothetical protein # Organism: B.clausii # Pathway: not_defined # 1 145 2 143 158 111 39.0 1e-23 MKKILALTLLAASLALSACSQTANTSGGTKQESAEKLTVTIMAPEKVPLNQETVLKVEVK QGQEPVKDAGDIQFEIWNIKNVDTAVNVVATYEDKGVYSVKNTFKEDGIYFVRTHVIARN QHIMPKQRIIAGNVSDEEIKTFEENTKKK >gi|333605299|gb|AFDH01000090.1| GENE 59 54005 - 54613 640 202 aa, chain - ## HITS:1 COG:DR2470 KEGG:ns NR:ns ## COG: DR2470 COG1268 # Protein_GI_number: 15807457 # Func_class: R General function prediction only # Function: Uncharacterized conserved protein # Organism: Deinococcus radiodurans # 9 192 41 221 229 100 38.0 1e-21 MEKMQLKRSSFTVRGITFSAMFAALLVALSFVNIQFGFSQVPFTLANFAIMLAGALLGAR YGFFSIALVVGLTALGLPLLHGRGGLDLVLGPTGGFIWAYPFAALFIGLLVPRIKGSGVT AFVLTFVTLFVFGSLLLYVTGVPWMAHVVSNMTLTKALSVGCIPYLPGDAVKAFIGALIV LPVRRMYPVSRLVGAESAWASR >gi|333605299|gb|AFDH01000090.1| GENE 60 54765 - 55634 567 289 aa, chain + ## HITS:1 COG:CAC3102 KEGG:ns NR:ns ## COG: CAC3102 COG1122 # Protein_GI_number: 15896353 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, ATPase component # Organism: Clostridium acetobutylicum # 18 283 21 279 281 152 35.0 1e-36 MHEVSVIKRGEPAEGVSAADQTLLNEINIELHKGEWLAVVGRNGSGKSTLAKVMAGLIPA AGGSIEPGWTAGERMRMVLQNPDTQLIGETVYEDLCFGMENAGIDPERMPETARHVLGLV GLADKRDDSCEALSGGQKQLTAVAGALAVGASVLLMDEVTSMLDSFSRSMVLGALSRLHG QGVTIVWITQRLDELALADKVIVVDEGKIAYSGDVRDFFYGTSSEDGSWVKIGENRPASS PCLELGYELPYTVEVARELHKLEALGLEERPVTPGELMEVLNRYGLPAR >gi|333605299|gb|AFDH01000090.1| GENE 61 55615 - 57561 1527 648 aa, chain + ## HITS:1 COG:L76755 KEGG:ns NR:ns ## COG: L76755 COG1122 # Protein_GI_number: 15672260 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, ATPase component # Organism: Lactococcus lactis # 16 267 13 267 288 149 36.0 2e-35 MDYLHVKNLSKTVGGPDTSFAVRDVSFTAVAGEITLLIGRSGAGKSTLLDMLGGLSVPDG GGIRYGDTELWPGSKQSAREARRKLALVFQHPHEQLFAATVRGEFDYTLRPFKLSGEERE ARIAEALELFGLGPELLDERPHELSGGTQRRAALASVFASRPRWLLLDEPTAGLDHEAAA RLTGTLRSWTRRTGGGALVATHDLDAFLPVADRIVMLSQGTVVHDCTSAELAARPAMLGD AGLLLPEALALGSLLRRHGVDVPAGLPAPEETAQAIAAVLAARARRGQGADAAAGLSAPE ERLSAAASADAPASPGSASREAVLCGSPPTFASDSATAPAGAVSAGPFECGIPAGSPAIE GDSSAAETVQAGTTADDPFPSSGSGPFPAMEPSPPALPIGRRFDPRTFWIGYVLLSAGIL LQKSLIGLAVSAAITAAAVLLSQVPFRAVWKPLRAFLIFTGLSAVIAGLTIGAGQGESPI GFDPQAALAAVRALSNLMLVLVLGVLFPLTVGYLRMKQGVEQGLAVLAGLKFPVEAVALT ASLMFRFIPLIGGQWNRFGRIAKARGQGRSGKSGLGLAEFRIMALPFMFSLIRMADEFST ALEIRGYSRTGGRRTRSRTLRMQARDYAAMGVFLLVFLCLAVLADILG >gi|333605299|gb|AFDH01000090.1| GENE 62 57692 - 57961 208 89 aa, chain - ## HITS:1 COG:no KEGG:PPSC2_c1339 NR:ns ## KEGG: PPSC2_c1339 # Name: not_defined # Def: protein # Organism: P.polymyxa_SC2 # Pathway: not_defined # 1 82 18 96 108 72 42.0 6e-12 MAYDPQVVEATKVSDNPKNGLFEVVVVLKDRTHGRIFFERNLQSGEIKASRISRLLKEPC PICRKDFLCNCLDRYLDNISGQALQKIES >gi|333605299|gb|AFDH01000090.1| GENE 63 58070 - 58345 348 91 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|167464499|ref|ZP_02329588.1| ## NR: gi|167464499|ref|ZP_02329588.1| hypothetical protein Plarl_18406 [Paenibacillus larvae subsp. larvae BRL-230010] hypothetical protein Plarl_22700 [Paenibacillus larvae subsp. larvae BRL-230010] # 1 85 1 79 83 73 47.0 5e-12 MEIDYAEVISTENELNLAVGVHFEDEPDSYYVVDILASPEGCIRSLELLFNGFSCKYTFK PDEKEQLVRYLNAHNPLALPWVIPDEEAGVK >gi|333605299|gb|AFDH01000090.1| GENE 64 58288 - 58542 203 84 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MAISRARKLRDKQIREGKLDPAIKRKSWDGVQPATKSTPTLQEKKRRVAHKHKRNSFPHT EDGSVYYFTPASSSGITQGRASGL >gi|333605299|gb|AFDH01000090.1| GENE 65 58758 - 58967 254 69 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKIRIDLSVGGEYIKEAFLQIEDRKVDHLTEEELLQAVEINIRSWADREIGISWEIVEFP VRPEDEEEG >gi|333605299|gb|AFDH01000090.1| GENE 66 59016 - 59477 503 153 aa, chain + ## HITS:1 COG:BH3473 KEGG:ns NR:ns ## COG: BH3473 COG0599 # Protein_GI_number: 15616035 # Func_class: S Function unknown # Function: Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit # Organism: Bacillus halodurans # 44 148 9 113 153 92 43.0 2e-19 MPTPPYLLFVLAQGAWGTLQKTKRKSASGVTTMSSATHAGGGAMDAKIDAYKTGISQLQE QLPSVADAYHQFTGECFKDGALPAKTKQLIALGMGLFANNEVCTFYHVQEALSKGANAEE IRETVAVAAAIGGGHAMSQGVTRVEQALQGVVH >gi|333605299|gb|AFDH01000090.1| GENE 67 59739 - 59996 384 85 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_2123 NR:ns ## KEGG: GYMC10_2123 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 83 1 90 101 83 53.0 4e-15 MKDKLSRFVAIMLLVIPGVMATYGFLSMKDAFFHQFEAEGYMHWGKFVLGFILFGLGVAF IGGWTFFRDRKRNYVAPRFKAKRRR >gi|333605299|gb|AFDH01000090.1| GENE 68 60305 - 61729 1020 474 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 6 474 4 458 458 397 45 1e-110 MSGQAYDIVILGGGTGGYVAAIRAAQLGKKVALVEKDKLGGTCLHRGCIPSKALLRSAEV LATTRQAEEFGVIAPDVSLDFTRVQSRKDGIVAQIHKGVQYLMKKNKIDVFNGIGRIMAP SIFSSRSGTLSVEMPDGSFETLVPEHLILATGSRPRVLPGLEPDGEHILTSDEALALEAL PDSLIIVGGGVIGVEWASMMNDFGVDVTVVEAGPRLVPTEDEEISRELDRLLRKRGVKVL ANASVLADTLRKDASGVTVAAEQKGERVELAAAKILVSVGRAPNVEQFGLENTDVKLERG FIRVNGHMQTNIPHIYAIGDVIGGLQLAHAASHEGVVAVEHICGLKPHTHEAHRIPRCVY TRPEIASVGWTEAEAKEKGFKIKTGKFGFKPLGKAIVYGENDGFVKVVIDADKNDLLGVH MIGPHVTDYIAEAALAQLLEASPWEIGSTIHPHPTLSEAFAEAVLAAEGRAIHI >gi|333605299|gb|AFDH01000090.1| GENE 69 61850 - 62851 1114 333 aa, chain + ## HITS:1 COG:BH2763 KEGG:ns NR:ns ## COG: BH2763 COG1071 # Protein_GI_number: 15615326 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit # Organism: Bacillus halodurans # 8 332 5 330 330 432 65.0 1e-121 MSIGQYVKHQQLGLSDERVIQMYTSMLLARKFDERSLLLQRSGKIAFHVSGVGQEAAQAG AAYALDAEKDYFLPYYRDYAFVLSVGMTMKELMLSVFAKAEDPNSGGRQMPGHFGHRKHR IVTGSSPVTTQVPHAVGIALAAKMKGDELVSFVTFGEGSSNQGDFHEGCNFAGVHKLPVI LMCENNRYAISVPYHKQVAGNIADRAIGYGFPGVKVDGNDPLEVYRVVKEARERALRGEG PTLIEADLYRVPPHSTSDNDLLYRTKEEVEENRAKDGLPKFRQYLIDCGIWSEEKDQELQ AEIQKEINEATAYADTAPYPTGEDTLKHVYAQA >gi|333605299|gb|AFDH01000090.1| GENE 70 62878 - 63478 593 200 aa, chain + ## HITS:1 COG:BH2762 KEGG:ns NR:ns ## COG: BH2762 COG0022 # Protein_GI_number: 15615325 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit # Organism: Bacillus halodurans # 1 200 1 201 327 290 70.0 1e-78 MAVITYLEAIRSAMQDEMQRDENVFVLGEDVGKGGVLNATKGLRDLYGESRVLDTPLAES AIVGTAIGAAMYGMKPIAEIQFADFIFPATNQIISEAAKIRYRSNNDWSCPIVIRAPYGA AGGGAIYHSQCPESVFFGTPGLKMVAPSNPYDAKGLLLAAIRDPDPVLYFEHKKCYLSLS AEVPEGDYIVPIGKAEVKRE Prediction of potential genes in microbial genomes Time: Sun Jul 17 09:47:07 2011 Seq name: gi|333605254|gb|AFDH01000091.1| Paenibacillus sp. HGF7 contig00100, whole genome shotgun sequence Length of sequence - 45220 bp Number of predicted genes - 43, with homology - 43 Number of transcription units - 14, operones - 11 average op.length - 3.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 2 - 47 15.3 1 1 Op 1 . - CDS 52 - 1479 1305 ## Sgly_2483 glycosyl transferase family 39 2 1 Op 2 1/0.000 - CDS 1490 - 1852 447 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily 3 1 Op 3 . - CDS 1849 - 2652 734 ## COG0463 Glycosyltransferases involved in cell wall biogenesis - Prom 2778 - 2837 3.6 - Term 2877 - 2905 -0.1 4 2 Op 1 1/0.000 - CDS 2921 - 3274 152 ## COG1145 Ferredoxin - Prom 3302 - 3361 2.5 5 2 Op 2 . - CDS 3363 - 4133 637 ## COG2771 DNA-binding HTH domain-containing proteins - Prom 4165 - 4224 8.0 - Term 4205 - 4263 8.2 6 3 Op 1 3/0.000 - CDS 4275 - 4691 557 ## COG4550 Predicted membrane protein 7 3 Op 2 . - CDS 4724 - 6208 677 ## PROTEIN SUPPORTED gi|16079597|ref|NP_390421.1| hypothetical protein BSU25430 - Prom 6246 - 6305 4.5 - Term 6275 - 6328 14.0 8 4 Tu 1 . - CDS 6363 - 6932 632 ## COG4869 Propanediol utilization protein - Prom 6983 - 7042 5.2 - Term 7003 - 7045 11.1 9 5 Op 1 23/0.000 - CDS 7054 - 7920 926 ## COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit 10 5 Op 2 . - CDS 7908 - 9659 1734 ## COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit - Prom 9745 - 9804 9.8 11 6 Tu 1 . - CDS 9883 - 10821 815 ## COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog - Prom 10865 - 10924 2.4 - Term 10864 - 10906 6.3 12 7 Op 1 2/0.000 - CDS 10942 - 11202 262 ## COG2359 Uncharacterized protein conserved in bacteria 13 7 Op 2 2/0.000 - CDS 11356 - 12090 722 ## COG1692 Uncharacterized protein conserved in bacteria - Prom 12136 - 12195 2.3 - Term 12181 - 12219 7.1 14 7 Op 3 1/0.000 - CDS 12235 - 13776 1355 ## COG1418 Predicted HD superfamily hydrolase - Prom 14009 - 14068 7.9 15 7 Op 4 14/0.000 - CDS 14092 - 14751 473 ## COG2137 Uncharacterized protein conserved in bacteria - Prom 14785 - 14844 2.2 - Term 14808 - 14852 4.3 16 7 Op 5 5/0.000 - CDS 14860 - 15921 823 ## COG0468 RecA/RadA recombinase - Prom 15946 - 16005 4.4 - Term 16171 - 16205 0.0 17 7 Op 6 4/0.000 - CDS 16209 - 17462 237 ## PROTEIN SUPPORTED gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase - Prom 17603 - 17662 4.3 - Term 17606 - 17653 -0.1 18 7 Op 7 2/0.000 - CDS 17706 - 18293 338 ## PROTEIN SUPPORTED gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase 19 7 Op 8 . - CDS 18293 - 19621 1004 ## PROTEIN SUPPORTED gi|227372256|ref|ZP_03855738.1| SSU ribosomal protein S12P methylthiotransferase - Prom 19657 - 19716 6.5 - Term 19684 - 19744 7.1 20 8 Op 1 1/0.000 - CDS 19750 - 20241 577 ## COG1666 Uncharacterized protein conserved in bacteria 21 8 Op 2 . - CDS 20287 - 21171 832 ## COG1426 Uncharacterized protein conserved in bacteria 22 8 Op 3 . - CDS 21224 - 21988 620 ## Pjdr2_3384 amino acid-binding ACT domain protein - Prom 22012 - 22071 3.8 23 9 Op 1 . - CDS 22080 - 22946 655 ## gi|167464742|ref|ZP_02329831.1| hypothetical protein Plarl_19662 24 9 Op 2 . - CDS 23027 - 23278 301 ## Pjdr2_3385 hypothetical protein - Prom 23338 - 23397 1.9 - Term 23330 - 23367 -0.9 25 10 Op 1 4/0.000 - CDS 23404 - 24159 263 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 26 10 Op 2 14/0.000 - CDS 24156 - 25442 1137 ## COG0612 Predicted Zn-dependent peptidases 27 10 Op 3 . - CDS 25439 - 26725 1039 ## COG0612 Predicted Zn-dependent peptidases - Prom 26785 - 26844 3.4 - Term 26799 - 26839 6.1 28 11 Tu 1 . - CDS 26861 - 27649 793 ## COG3773 Cell wall hydrolyses involved in spore germination - Prom 27701 - 27760 4.4 - Term 27731 - 27772 3.1 29 12 Op 1 . - CDS 27785 - 30382 1789 ## COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins 30 12 Op 2 . - CDS 30447 - 30677 275 ## gi|167464749|ref|ZP_02329838.1| hypothetical protein Plarl_19697 31 12 Op 3 1/0.000 - CDS 30674 - 31882 961 ## COG0740 Protease subunit of ATP-dependent Clp proteases - Prom 31973 - 32032 2.5 - Term 31978 - 32013 4.1 32 12 Op 4 9/0.000 - CDS 32051 - 33727 1383 ## COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily - Prom 33789 - 33848 5.8 - Term 33855 - 33890 4.9 33 13 Op 1 6/0.000 - CDS 33917 - 34750 715 ## COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase 34 13 Op 2 13/0.000 - CDS 34807 - 35802 976 ## COG0527 Aspartokinases 35 13 Op 3 2/0.000 - CDS 36119 - 37156 888 ## COG0136 Aspartate-semialdehyde dehydrogenase 36 13 Op 4 . - CDS 37192 - 37788 460 ## COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase 37 13 Op 5 . - CDS 37785 - 38684 599 ## Pjdr2_3397 dipicolinate synthase subunit A - Prom 38819 - 38878 2.6 - Term 38818 - 38869 13.8 38 14 Op 1 1/0.000 - CDS 38995 - 39474 449 ## COG0756 dUTPase 39 14 Op 2 2/0.000 - CDS 39464 - 40720 1256 ## COG0612 Predicted Zn-dependent peptidases 40 14 Op 3 2/0.000 - CDS 40811 - 41872 722 ## COG0726 Predicted xylanase/chitin deacetylase 41 14 Op 4 26/0.000 - CDS 42032 - 44137 197 ## PROTEIN SUPPORTED gi|170017041|ref|YP_001727960.1| 40S ribosomal protein S1 - Prom 44172 - 44231 3.9 42 14 Op 5 9/0.000 - CDS 44389 - 44658 422 ## PROTEIN SUPPORTED gi|192812893|ref|ZP_03041559.1| ribosomal protein S15 - Prom 44735 - 44794 2.3 43 14 Op 6 . - CDS 44812 - 45207 286 ## PROTEIN SUPPORTED gi|163762565|ref|ZP_02169630.1| ribosomal protein S2 Predicted protein(s) >gi|333605254|gb|AFDH01000091.1| GENE 1 52 - 1479 1305 475 aa, chain - ## HITS:1 COG:no KEGG:Sgly_2483 NR:ns ## KEGG: Sgly_2483 # Name: not_defined # Def: glycosyl transferase family 39 # Organism: S.glycolicus # Pathway: not_defined # 13 475 12 480 493 316 39.0 1e-84 MEHKTRIPAWLITALLFIAIAALRIPYITNSPYEIDSWRQSDTESIARHFVETKFNLFYP QFNYQGPLPNYVELEFQITPFLIAILYKLFGYQYWLARLVPLAFFMGSAWFLYLIARTFY TKRTAWIAVLLYGILPVAVTYSRAIMPEAASLFFYLGAFYAFTVWIRKGGTAFVLTAALF TALAISLKVPTVFVGIPMLFMAAAKFKGKMVLNWRLWLFAALALGLPALYYAWASSVAEF QFVSGIATKHIFPKMATALFTPETWDFFLRELPKAFTWPLLALAAAGLIAGFRQKDIPVR VWGWAMLLELATIVAVIKFDYYLIFFAPVAALLAAKTIGRLTELRFGWIPAAVVVAGIGW ACVLMMNPDYGKEKTVILEQARAVERLTKPGDLIVVGTDDPSLLNASHRVGWRVLNSIPD DPVKELEYFRAGGAAYFVPLKGQIDGDKAGELRRYLNEKFEKIPVEGGYDIYRLN >gi|333605254|gb|AFDH01000091.1| GENE 2 1490 - 1852 447 120 aa, chain - ## HITS:1 COG:BMEII0439 KEGG:ns NR:ns ## COG: BMEII0439 COG0697 # Protein_GI_number: 17988784 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Brucella melitensis # 1 118 21 138 159 74 39.0 5e-14 MSALWVILLSVGMGAVGQVLLKAGANRLGELSLAPATLIPDVFRMVKTPEILIGLILFGT SFLLWVKVLTKVELSYAYPMMSLSYVIVFVMSFLWFQETFTMQKLVGMAVIIIGIIIINK >gi|333605254|gb|AFDH01000091.1| GENE 3 1849 - 2652 734 267 aa, chain - ## HITS:1 COG:CAC2522 KEGG:ns NR:ns ## COG: CAC2522 COG0463 # Protein_GI_number: 15895786 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Clostridium acetobutylicum # 9 249 3 245 249 171 39.0 9e-43 MPEELSFMKETIIVGLPAYNEQDALPKLLPKLEQLSVQFGEAFRVVVVNDGSSDGTAGVL KEACRTYGWLQVIDHERNRGLGEAMNTLVRFVTSEYQPSDVLVTLDADNTHNPNLIPALV AKLKENKLDLVVASRFARGGQELGLSFLRRLYSRGAMVFFKLFFPIEGVHDYSSGFRAYR IGYLNQAMNLYKERLITTSGFDCMAEMMARFSKIGIKAGEYPLVLEYHLKVGRSKMNVKR TIAGYFRLLMKVKPPVQGTQKKVKGTV >gi|333605254|gb|AFDH01000091.1| GENE 4 2921 - 3274 152 117 aa, chain - ## HITS:1 COG:BS_yhjQ KEGG:ns NR:ns ## COG: BS_yhjQ COG1145 # Protein_GI_number: 16078124 # Func_class: C Energy production and conversion # Function: Ferredoxin # Organism: Bacillus subtilis # 15 117 6 108 108 82 58.0 2e-16 MPYDMTHEGVNEEIQRCIEECINCIKTCNYCFDACLKEDHASHMAACIRLTRECADICTY AASAMTRQSPFIVEICNLCATVCEICAKECAEHEHEHCQECAKVCRSCAEACRRMAA >gi|333605254|gb|AFDH01000091.1| GENE 5 3363 - 4133 637 256 aa, chain - ## HITS:1 COG:CAC0445_1 KEGG:ns NR:ns ## COG: CAC0445_1 COG2771 # Protein_GI_number: 15893736 # Func_class: K Transcription # Function: DNA-binding HTH domain-containing proteins # Organism: Clostridium acetobutylicum # 3 165 2 163 163 161 44.0 1e-39 MKDVSELFWNASTDEIKRGYIFSDQEDAYVCLVCGKSFTKGIIYREDETFYEAEKFASRH IAAEHGSMFHYLLNLNKKLTGLTDLQKQLLGFFHDGLSDKEIVGELGGGSTSTIRNHRFT MREREKQAKVYLALMGLLDQRPDAGKAPSFIAVPKSATVLDERFAITEQENEQFLKLYFS EGIDGPLNKFPKKEKRKIAILRQLATRFEADRKYTEKEVNEVLKEAWHDYVTIRRYLIEY GFMKRHDDGSAYWVTR >gi|333605254|gb|AFDH01000091.1| GENE 6 4275 - 4691 557 138 aa, chain - ## HITS:1 COG:BH2371 KEGG:ns NR:ns ## COG: BH2371 COG4550 # Protein_GI_number: 15614934 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Bacillus halodurans # 7 128 2 123 146 86 42.0 2e-17 MEHYTNTEMIVREDILAKTKELAELLTTSSEVQFFQQAEKQINQNEHIQSLIQAMKKKQK EIVAFEKFDNEIMVKKIEKEIEDLQDELDNIPIVSEFQQSQADINYLLQLVMGVIRDTIA DKITVESGSAQPPSSCSE >gi|333605254|gb|AFDH01000091.1| GENE 7 4724 - 6208 677 494 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|16079597|ref|NP_390421.1| hypothetical protein BSU25430 [Bacillus subtilis subsp. subtilis str. 168] # 57 473 8 423 451 265 36 4e-70 MTVKTAKSDKDFSIYFQPPSYKDAKKRGKENIEVLYDFNIPEEMKEFGQGKRYMIRTYGC QMNEHDTETMKGMLEELGYTSTEEKQEADVILLNTCAIRENAEDKVFGELGHLKHLKLEK PNLVLGVCGCMSQEEGVVKRILQKHGHVDLIFGTHNIHRLPALLQDAYLSKEMVVEVWSK EGDIIENLPKKREGMRAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDVLAEVRDLARQG FKEITLLGQNVNAYGKDFEDISYSFGDLMADMRKIDVPRIRFTTSHPRDFDDHLVEVLAH KGNLMEHIHLPVQSGSTEVLKRMSRKYSRELYLDLVRKIKTAIPDVVLSTDIIVGFPGET DEQFEETLSLVKEVRFDFAYSFIYSPREGTPAAAMEDNVPEDVKKERLYRLNEVLGAFSK ESNEKLRGEVVEVLVEGESKKNSEVLSGRTRTNKLVLFRGSKNLIGSFAHVRVTEPQTWL VKGELVAEPLQMLS >gi|333605254|gb|AFDH01000091.1| GENE 8 6363 - 6932 632 189 aa, chain - ## HITS:1 COG:TM0375 KEGG:ns NR:ns ## COG: TM0375 COG4869 # Protein_GI_number: 15643143 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Propanediol utilization protein # Organism: Thermotoga maritima # 4 189 23 209 210 211 58.0 6e-55 MKQIPIGISARHIHLKPEHITRLFGEGYELTVLKDLSQPGQFAAGETVAVVGPKGRFDKV RILGPARNISQLEISRTDAFALGVNPPVRESGNIEGTPGIKIVGPKGEVELEEGVIVAAR HIHFHTEDAKKWGIEDKQRLRVRVGTDRPVIFEDVIARVSDQFALDMHIDTDEGNAAGLK TGDVGIIVD >gi|333605254|gb|AFDH01000091.1| GENE 9 7054 - 7920 926 288 aa, chain - ## HITS:1 COG:BH2373 KEGG:ns NR:ns ## COG: BH2373 COG1013 # Protein_GI_number: 15614936 # Func_class: C Energy production and conversion # Function: Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit # Organism: Bacillus halodurans # 1 287 1 287 288 462 74.0 1e-130 MATLKDFRNNVKPNWCPGCGDFSVQASIQRAAANVGLEPEQLAIVSGIGCSGRISGYVNC YGFHGIHGRSLPIAQGLKMANRELTVLASGGDGDGFAIGMAHTVHAIRRNIDMTYIVMDN QIYGLTKGQTSPRSGEGFKTKSTPSGSIETPLAPLEMALAAGATFVAQSFSSNLKQLTHI IEEGIKHQGFSLINVFSPCVTFNKVNTYDWFKENIVDLETIPDYDPSNRIQAMTKLMETD GMLTGIIYQNKTKPSYENLVTGFKAEGLAKQDMKLNQADFDKLVAEFK >gi|333605254|gb|AFDH01000091.1| GENE 10 7908 - 9659 1734 583 aa, chain - ## HITS:1 COG:BH2374_2 KEGG:ns NR:ns ## COG: BH2374_2 COG0674 # Protein_GI_number: 15614937 # Func_class: C Energy production and conversion # Function: Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit # Organism: Bacillus halodurans # 188 577 1 392 393 536 68.0 1e-152 MISQLSWKIGGQQGEGVESTDRIFSTALNRLGYYLYGYRHFSSRIKGGHTNNKIRISTKP IRSISDDLDILVAFDQETIDLNSHELGVHGVIVADAKFNPTLPEGVNARLFPVPITAIAE ELGTSLFKNMAASGASWALLGLPLDVFNKAVEEEFGRKGAAVVEKNVEAVRKGAESVLEL AGGPIAELQLEPADGEQKLFMIGNDAIGLGAVAAGCRFMPAYPITPASEIMEYLTKVLPK FGGAVIQTEDEISACTMAIGASYGGVRAMTASAGPGLSLMMEAIGLAGMTETPVVIVDTQ RGGPSTGLPTKQEQSDVNAMIYGTHGEIPKVVLAPSTIEECFYDTIEAFNIAEKLQLPVI LLTDLQLSLGKQSSEVLDYNKIVIERGNLVAQPEEVEDSKQLFKRYELTENGVSPRVLPG VKYGLHHVTGVEHDQEGRPSESPVNRKKMMDKRLEKLKHVEVTNPILVTAPHEEPDVLII GMSSTGGTIEEARGRLEKDGLATNHVHVRLLHPFPAEELKPHLEKARNVIVVENNATAQL ANLIKLNAGSADKIKNMLKYDGTPFLPSEIYQECKELTVAWQR >gi|333605254|gb|AFDH01000091.1| GENE 11 9883 - 10821 815 312 aa, chain - ## HITS:1 COG:BH2271 KEGG:ns NR:ns ## COG: BH2271 COG2355 # Protein_GI_number: 15614834 # Func_class: E Amino acid transport and metabolism # Function: Zn-dependent dipeptidase, microsomal dipeptidase homolog # Organism: Bacillus halodurans # 2 312 3 308 310 224 39.0 2e-58 MIIDAHCDALMKMYRNPLLDFNAAEPVLDVSYPLMKQGGVKIQFMAVYLPEEIKNPDVGH ILEYVDILYRRVLCNPDIVLIQSRSDLQHVLTTGKRGVLLTLEGAEGLRGSLAQLRILYR LGLRSIGPAWNFANWAVDGAMETRNGGFTLRGQQLIKESNQLGLLLDASHLSEKAFWEAA DVPGLHLFASHSNAKSACDHPRNLTDGQIRCLIERKGMIGITFVPWFVKKTGSVFITDLF RHIDHICSLGGEDFIGFGSDFDGIDKYIRGLENAGMYANLANELYKHYTPVQAQKFLWQN GYAFLERSLPVS >gi|333605254|gb|AFDH01000091.1| GENE 12 10942 - 11202 262 86 aa, chain - ## HITS:1 COG:CAC1817 KEGG:ns NR:ns ## COG: CAC1817 COG2359 # Protein_GI_number: 15895093 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 1 86 1 86 86 127 89.0 3e-30 MEVLKVSAKSNPNSVAGALAGVLRERGAAELQAIGAGALNQAIKAVAIARGFVAPSGVDL ICVPAFTDIVIDGEDRTAIKLIVEPR >gi|333605254|gb|AFDH01000091.1| GENE 13 11356 - 12090 722 244 aa, chain - ## HITS:1 COG:BS_ymdB KEGG:ns NR:ns ## COG: BS_ymdB COG1692 # Protein_GI_number: 16078760 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 2 244 22 264 264 310 60.0 1e-84 MVPKLKLKYANAVFIANGENAAGGRGITSQITKELYQLGIHGITLGNHTWDQKEIFDFID DEVQMVRPANFPEGAPGRGHTVLKVRNQEILLINLQGRTFLPPIDCPFRKVDEILEAAKG KYKHIFVDFHAETTSEKIAMGWHLDGRVSAVVGTHTHVQTNDNRVLPQGTAYVTDVGMVG PRDGVLGMERTAVLRKFTTQLPVRFIVDEGQWHFHATVIDLDDTTGKAGKIELIRINEED LLFE >gi|333605254|gb|AFDH01000091.1| GENE 14 12235 - 13776 1355 513 aa, chain - ## HITS:1 COG:BS_ymdA KEGG:ns NR:ns ## COG: BS_ymdA COG1418 # Protein_GI_number: 16078759 # Func_class: R General function prediction only # Function: Predicted HD superfamily hydrolase # Organism: Bacillus subtilis # 22 513 22 520 520 604 75.0 1e-172 MNPIIWVLIILVVGVICLGIGYFIRKSLAEAKISSAETAAAQIVENARKEAEALKKETVL EAKDEVHKLRAEAEKDIRERRNESQRHERRLLQKEESLDKKLESLERKEEQVANKEKRIE ETQNQIDELYRKQVSELERISGMTMEEAKTIILSGVEQEVRHETAQLIKEIEQQAKEEGD KKAREIITLAIQRCAADHVAETTVSVVSLPNEEMKGRIIGREGRNIRALETLTGIDLIID DTPEAVILSGFDPIRREIARTSLEKLVADGRIHPARIEEMVEKSRKEVDERIREYGEQAT FEVGVHGLHPDLIKILGRLKFRTSYGQNVLKHSMEVAYLSGLMAGELGEDVTLAKRAGLL HDIGKALDHEVEGSHVEIGVEIAKKYKEHPVVVNSIASHHGDVEATSVIAMLVGAADALS AARPGARRETLETYIKRLEKLEGISESFEGVEKSYAIQAGREVRVMVQPEKIDDAEAFRL ARDITKKIENELDYPGHIKVTVIRETRAVEYAK >gi|333605254|gb|AFDH01000091.1| GENE 15 14092 - 14751 473 219 aa, chain - ## HITS:1 COG:BH0924 KEGG:ns NR:ns ## COG: BH0924 COG2137 # Protein_GI_number: 15613487 # Func_class: R General function prediction only # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 8 205 2 204 266 104 36.0 2e-22 MKDETEASVITGIERQKRNKKRYNVYVNDEYACSVHEDILIKNRLLKGEQIDVQRLRQAL EEDEKHEAYMKAIRFVAVRPRSVQEVKMKLKDLGYEADLIDWTVGRLLEQKYLDDADFAK LWTEQRIQYQRKGRNAVRYELAQKGLSRDEISKALSAVDTEEEMEGALIVGRKKWKTVSG ERMDRKRKTMAFLLRRGYPSSLVNDVMRRLSEEELENEE >gi|333605254|gb|AFDH01000091.1| GENE 16 14860 - 15921 823 353 aa, chain - ## HITS:1 COG:BH2383 KEGG:ns NR:ns ## COG: BH2383 COG0468 # Protein_GI_number: 15614946 # Func_class: L Replication, recombination and repair # Function: RecA/RadA recombinase # Organism: Bacillus halodurans # 1 344 1 339 349 531 81.0 1e-151 MSDRRAALEMALRQIEKQFGKGSIMKLGESTHMQVETIPSGSLALDIALGTGGFPRGRII EIYGPESSGKTTVALHAIAEVQKSGGQAAFIDAEHALDPLYASKLGINIDELLLSQPDTG EQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAI NKSKVIAIFINQLREKVGVMFGNPETTPGGRALKFYSTVRLDVRRVETIKQGNDMVGNRT RVKVVKNKVAPPFKQADIDIMYGEGISREGSIIDIGTELDIVNKSGAWYSYNGDRLGQGR ENSKQFLKENKEIADVIEQKIREASNLTNVVPPAGVDVDDPDEELALFTEDEE >gi|333605254|gb|AFDH01000091.1| GENE 17 16209 - 17462 237 417 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase [Cryptobacterium curtum DSM 15641] # 254 406 746 895 904 95 39 4e-19 MKAELIAVGTELLLGQILNTNAQYLAQECAMLGIDLYFQTVVGDNPARIREALEQAGKRA DLVITTGGLGPTLDDLTKDVLADMTGRRLYIDEISMAKIRELFDSQGLHMVESNSRQANM IEGAEPLPNDTGLAVGLGLDHEGTRYLLLPGPPKEMKPMFERYAKDWLSGLITDEMPLYS KMLKFAGIGESSLEHKLFDLIEKQTDPTIAPYAKEGEVTIRLATKAHTEEEALRKMEQVE KEIRSRVGEHLYAEEDIPIEEAVLAILQSRNQTLTTAESCSGGLLSDLITSIPGRSSVFL GGVVSYSNEMKHSMLGVPTELLEGEDAPGAVSAETAEAMVRGLLERTHADYAVSVTGVAG PTTSEGKPIGLVYVGVGCKDGDIHVQKLQLPGLRETIKLRAAKTALHQLWKLVKADG >gi|333605254|gb|AFDH01000091.1| GENE 18 17706 - 18293 338 195 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase [Cryptobacterium curtum DSM 15641] # 4 194 483 675 904 134 39 1e-113 MNLANKITLARIFLVPIIMFFLLVNIQFPHIKIQTFSITYNQIIAALIFIIAASTDSLDG YIARKNKLVTNLGKLLDPLADKLLVTAVLVSLVEMDKLGAWIVIVIISREWAVTGLRQIA LLEGAVIQASKWGKAKTAAQITAIIALLINNFPFAFINVPFDLIASWIAAIITVYSGLDY FIKNKHVIDFSEKTQ >gi|333605254|gb|AFDH01000091.1| GENE 19 18293 - 19621 1004 442 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227372256|ref|ZP_03855738.1| SSU ribosomal protein S12P methylthiotransferase [Veillonella parvula DSM 2008] # 1 441 1 448 449 391 46 1e-108 MTEKVRVVTLGCEKNLVDSEIMSGLVDQRGYSVVENNEEATVIIVNTCGFIDAAKEESVT TILDMADLKRTGNLKALIVSGCLTQRYKEELMKEMPEIDGIVGTGDFHNINAIIDEALKG KKPVYVGNPVFNYEQALPRKVSTPRYTAYVKIAEGCDNACTFCSIPIMRGKFRSRSMESV ISEARQLASQGVKEVSLIAQDSTNYGTDLYDKFMLPELLNRVSEVEGIEWVRLHYAYPGF FTDELIETMAANPKVCKYIDMPLQHSSDAILKRMRRPGRDKDARELILKIRKRMPDAALR TSLIVGFPGETEEDFEHLVQFVKDVQFDRLGVFTYSMEEDTPASRLPGQVPDEVKEYRAA ALMELQREISNRRGGRRLGEAVDVLIERYDGRSDVYIGRSQYDAPEIDGEVFVTGNNIGI GGVVKVRVTHSFEFDLSGEVIA >gi|333605254|gb|AFDH01000091.1| GENE 20 19750 - 20241 577 163 aa, chain - ## HITS:1 COG:BS_yitK KEGG:ns NR:ns ## COG: BS_yitK COG1666 # Protein_GI_number: 16078166 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 163 1 163 163 172 61.0 2e-43 MSSESSFDIVSKLDMQELNNAITQAKREIETRFDFKGSKSEITLEKEELVLLSDDDFKLQ NVIDILHAKMAKRGIALKNLEYGKIESASLGTVRQRVKLKQGIEADIAKKINIMIRDSKL KVKSQIQGDSIRITGKSRDDLQKVIQMLKGADLPIDLQFDNFR >gi|333605254|gb|AFDH01000091.1| GENE 21 20287 - 21171 832 294 aa, chain - ## HITS:1 COG:lin1432 KEGG:ns NR:ns ## COG: lin1432 COG1426 # Protein_GI_number: 16800500 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 291 1 300 311 112 30.0 1e-24 MSELGQRLKQARLEKRMSLDDLQEVTKIRTRYLEAIEEENYKVLPGSFYVRAFIKSYAEA VGLDPNEVLNMYQGTVPAAPPEPTVETIRTPRRSSARSTDRLSKWASTIMVVSFVLLIAA IVYYFVVVNNKGGSSGAINEPNRLTDTADPNATAAPSPAPGNGGGTTATTTPSPTPTPSA TPTPTPTPAGALTLVNSSSSLDNYTAVGGKLDITVTAAGTQCWYRVDSFPNNSKKMEKQG TLKQGETETFSLTTTAQIRVGAANAAKITVNGQELNVGDASNPKNIKITLQPQP >gi|333605254|gb|AFDH01000091.1| GENE 22 21224 - 21988 620 254 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_3384 NR:ns ## KEGG: Pjdr2_3384 # Name: not_defined # Def: amino acid-binding ACT domain protein # Organism: Paenibacillus # Pathway: not_defined # 4 250 5 251 257 417 85.0 1e-115 MEIKEWYMEYRIHKNRPGLLGDIASLMGMLDINIVTINGVEDRTRGMLLQTNDDEKIELM GKMLKKVDNITITAFRTPKLVDILAVRHGRYIERDSDDRKTFRFTRDELGLLVDFLGEVF KREGNQVIGLRGMPRVGKTESIIAGSVCSNKRWTFVSSTLLRQTVRSQLSEDEMSMNNVF IIDGIVSTIRSNEKHFSLLQEIMATPSTKVIEHPDIFIKESHYTYNDFNYIIELRNSPDE EINYDSFTYNTEPF >gi|333605254|gb|AFDH01000091.1| GENE 23 22080 - 22946 655 288 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|167464742|ref|ZP_02329831.1| ## NR: gi|167464742|ref|ZP_02329831.1| hypothetical protein Plarl_19662 [Paenibacillus larvae subsp. larvae BRL-230010] hypothetical protein PL1_2603 [Paenibacillus larvae subsp. larvae B-3650] hypothetical protein PL1_2603 [Paenibacillus larvae subsp. larvae B-3650] # 9 286 10 286 287 158 31.0 4e-37 MSFSRVKLALFLPVITVMLSSCGTRGLPTITEQQLASKHSVLVVTAPDVSQETKTSVAAA LAKWRSGSGLTSEWKQDAAFDSALGKQLESKRYDYVVVIGSSLVPQASAEAVRLKNQKFV VLADRLEDPGMQAEKTAPPNTVLRGVDHAMIEQAMSGWVKEQADKRKSIEWVTKSSVPIP SGLSPSGLSGHTVNTDSNPEWFDQLKKQAVEHRSSWIIQFTSLQKTDQQKIKSLGIPVVP LDQSFAVQVNWEAVMAQEQNRMIQGDWKPGIQTYSAEEMNQVEFLKKS >gi|333605254|gb|AFDH01000091.1| GENE 24 23027 - 23278 301 83 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_3385 NR:ns ## KEGG: Pjdr2_3385 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 1 82 1 82 83 93 59.0 3e-18 MSTVLTVFDRWKEFLAERVDQAERVGLNDEKISKLAFQIGEFLSDKVDPENREERLLKEL WDAGDENERKVMARLMVKLVNKE >gi|333605254|gb|AFDH01000091.1| GENE 25 23404 - 24159 263 251 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 9 247 3 238 242 105 31 4e-22 MTGLRPFTEQTVLVTGGSRGIGAAIAERFAKLGMNVVIHYLQSHESANEVARRCMNHGAK VMTVCADLNSKEQIVAMRDKMEQRGFMPDVLVNNAGISHYGLLSDVTEEEWDRVMNINLK GTFLCSQLFMDGMISRKYGRIINVSSIWGISGASCEVIYSTAKGGINAFTKALAKELAPS GVTVNAVAPGAVDTDMMSGFDHAEKEAIASEIPAGRFAAPDEIASLVYFLALPESGYITG QIISPNGGWLT >gi|333605254|gb|AFDH01000091.1| GENE 26 24156 - 25442 1137 428 aa, chain - ## HITS:1 COG:BH2392 KEGG:ns NR:ns ## COG: BH2392 COG0612 # Protein_GI_number: 15614955 # Func_class: R General function prediction only # Function: Predicted Zn-dependent peptidases # Organism: Bacillus halodurans # 1 426 1 427 432 469 55.0 1e-132 MNVIPYPHLNETLYEEKLPNGLHVYVLPKEGFQKTYATFSTRYGSIDNHFQVEGGPEIRV PDGIAHFLEHKMFEEPTGDVFATFASRGASANAFTSFERTVYLFSATGQIMENITTLIDF VQNPYFTEENVEKEKGIIGQEINMYRDNPDWRAYYGLIEALYSKHPVRIDIAGTIPSITE ITKDMLYDCYHTFYHPSNMTVFIAGGVNPEEVISHIRANQAAKTFKPQGEIRRFFESEPE AVETERKETLLPVSLPKCLFGFKEKALHEEGDAILKRELTTKLVLEVLLGSSSPIYQKLY NEGLISDNFSHEYNSSPEYAFSAMGGDTKDPDLLLSRIREELDRAKTEGLDEEAFERSRR KKIGGFLRMLNSPEAITNEFTRYLFKGADMFDILKTYESITKDEAESRLREHFDWSRFAV SLVRSERP >gi|333605254|gb|AFDH01000091.1| GENE 27 25439 - 26725 1039 428 aa, chain - ## HITS:1 COG:BH2393 KEGG:ns NR:ns ## COG: BH2393 COG0612 # Protein_GI_number: 15614956 # Func_class: R General function prediction only # Function: Predicted Zn-dependent peptidases # Organism: Bacillus halodurans # 14 425 14 430 431 304 40.0 3e-82 MSTQQFERSTLRQIRLHVLPTDRYKTFAISAYIGRPLSEEDVTQTALVPFVLRRGTESYP ETKQFREHLDDLYGAGFGFDIYKRGDYQIVQFRMDVINDRFVSSPESLLEKALSFLGEAI TKPAAEGDAFLSKYVESEKETLRKRIESIINDKIRFAAERCMAEMCKGEPYRLHPLGELK DIPASTPESLFAYFKKWLAEAPIDLYVVGNTTLQEVENIVSRSFRLEREENPVYTRTAPQ RRTGETNVVVERFPVAQGKLNMGLRTSVTYGDDAYPAALMYNGILGGYPHSKLFLNVRER ASLAYYASSRLDGHKGILTIQSGIEMQNYEKAVDIIRKQLEDMRTGFISDIELSQTRAMI ANQLREMQDSAFEQIAFDFNAVLSGKERTVQELIDGVTNTSIAEIQQAAEGVFLDTIYFL RDEKEEAK >gi|333605254|gb|AFDH01000091.1| GENE 28 26861 - 27649 793 262 aa, chain - ## HITS:1 COG:BH1631_2 KEGG:ns NR:ns ## COG: BH1631_2 COG3773 # Protein_GI_number: 15614194 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell wall hydrolyses involved in spore germination # Organism: Bacillus halodurans # 144 261 14 131 132 191 72.0 1e-48 MNKRLIAITVCVVFTLFAALQIKQNFTTEATFSKNLISYGAKGSDVNELQGRLKFLGFYT GTVDGDYGWRTLRSVKWFQSEFGLKVDGHVGPKTKLKLWEATKNWKPTAPEAANTGKAAG QANQGNQGGTAASGSNLTPTTHKGFSKSDLDLMANAVYGESRGEPYIGQVAVAAVILNRV DSASFPNTVSGVIFQPGAFTAVADGQIWLTPNETAKKAVRDAINGMDPTGGCEYYFNPET ATSKWIWTRPQVKTIGKHIFCK >gi|333605254|gb|AFDH01000091.1| GENE 29 27785 - 30382 1789 865 aa, chain - ## HITS:1 COG:BS_spoIIIE KEGG:ns NR:ns ## COG: BS_spoIIIE COG1674 # Protein_GI_number: 16078743 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: DNA segregation ATPase FtsK/SpoIIIE and related proteins # Organism: Bacillus subtilis # 12 858 15 782 787 723 49.0 0 MAKRRKKSKTVKTNLMFELYGILILIFSVIALAREGHVGRSFHYVCRFFIGTWDFLIPLI CIYIALHVMVKRSWPSRWTTRKTGVLLIVTGLLVMNHINLFQALFLEGDYEATTILSVTW EALKQGLQPANGKILLNDVGGGMIGAIVYSLLYFLFDNMGARLVQFALFAIGLILVTNLS YVEAVQKLRARVKRFFTLLEKKFQNMQRGKGRSSSAAKTKGKAAVSASKSERTYKEPDFP YDDEFDEEVYRPDPKRKKPRFLQLLKQPGPQRDDDQDEDDLAVSGAAGGYPEEKVVYKVD SDRDPAALNMNDEPQADREFSTVFRDFQEQVQKEEKVVPSSPVTAGTVGPAALAVSAKAA PSANGEQIPADEQLETVDDLQLVDTAVPPVLPPYDLPSLTLLSKPAAGKGSEMADYKANA RKLEATLESFGVRAKVLEVVRGPAVTRYEIQPDVGVKVSRIVSLTDDIALALAAKDIRME APIPGKSAIGIEVPNSEVSVVTMREVMETSAFQEASSRLSVTLGRDISGQPIVGNLAKMP HLLVAGATGSGKSVCINGIITSILYKAKPNEVKFLMVDPKMVELNVYNGIPHLMAPVVTD PRRASLALKKVVVEMEKRYELFSKSGTRNIEGYNAMLIENGTEAPLPYIVVIVDELADLM MVAANDVEDAICRLAQMARAAGIHLIIATQRPSVDVITGVIKANIPSRIAFGVSSQVDSR TILDMVGAEKLLGRGDMLYLPVGASKPVRVQGAFLSDQEVETVVNFVRTQQEANYREDMV PQVEEQPEQQDEFGDELYDQAVQIVIEAKQASASLLQRRMRIGYARAGRLIDSMESNGIV GPHEGSKPREVLISLEQFQHNRMSS >gi|333605254|gb|AFDH01000091.1| GENE 30 30447 - 30677 275 76 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|167464749|ref|ZP_02329838.1| ## NR: gi|167464749|ref|ZP_02329838.1| hypothetical protein Plarl_19697 [Paenibacillus larvae subsp. larvae BRL-230010] # 1 70 1 70 78 67 44.0 5e-10 MTHYTILPDEVVYEGWDEYEPRFRDVEISGILMQVETVDESRVRIVRLYSPEPKHYLNPL FTPGSLINYVPGPQGI >gi|333605254|gb|AFDH01000091.1| GENE 31 30674 - 31882 961 402 aa, chain - ## HITS:1 COG:BS_ymfB KEGG:ns NR:ns ## COG: BS_ymfB COG0740 # Protein_GI_number: 16078742 # Func_class: O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Protease subunit of ATP-dependent Clp proteases # Organism: Bacillus subtilis # 169 398 6 237 241 320 69.0 2e-87 MGNGNRYKGQQNRPAYTGAGVSSERYAGRNEYPFQQANANVSAGSGGSLNRGNGYGGQQG AGQNAFSEAGNTNHTYTSGAPRGSYGQVTANTFNPAPYGLRQNDSSYTAEETANDADNVT LQQVHFEELGEGAAALRAEASVTSDYNPRPQAPFPGPAPFNEPPSFRSEEQPTEEQKKLA AVETIQQLGQINTPAGESNIYCMSIIGQVEGHIVLPPQNKTTKYEHLIPQLVAAEQNPKI EGVLVILNTVGGDVEAGLAIAEMLATISKPTVTLVLGGGHSIGVPIAVSSNRSFIAETAT MTIHPIRLTGLVIGVLQTFEYLEKMQERVTRFVTKHSKISEEQFKELMFKTGELTRDIGT TVIGQDAVKYGLIDEVGGIGQAIAELNRRIEERRGSRGGGTA >gi|333605254|gb|AFDH01000091.1| GENE 32 32051 - 33727 1383 558 aa, chain - ## HITS:1 COG:BH2398 KEGG:ns NR:ns ## COG: BH2398 COG0595 # Protein_GI_number: 15614961 # Func_class: R General function prediction only # Function: Predicted hydrolase of the metallo-beta-lactamase superfamily # Organism: Bacillus halodurans # 1 558 1 555 555 729 64.0 0 MSKKNNDKVLIFALGGVGEIGKNMYVVQYANDIVVIDSGLKFPEEDMLGIDIVIPDINYL LENKDKVRGIVLTHGHEDHIGGLPYVLRHLNVPVYGTRLTLGLVENKLREANLLGETKRI LINADSELNLGTITATFFKTNHSIPDSVGVALETPEGVVVHTGDFKFDQTPVNDQYADLH RMAEIGKKGVLALLSDSTNAEKPGFTGSEKSVGVTIEEVFRKAKQRVVIATFASNIHRVQ QVIDAAEATRRKVTVIGRSMVNVVSIASELGYLRVPDGMLIEPEEVNRMAADRVVVLCTG SQGEPMSALTRMARSTHRKVDILPGDTVIIAATPIPGNERYVGRTVDELFRLGADVIYGP GSKTGVHVSGHGSQEELKLMLNLMKPKYFIPIHGEYRMLRLHGQLAESVGVDQEDIFILD NGDTVEIQGGVARKGARIQAGNILIDGLGVGDVGNIVLRDRKLLSQDGILVVVVTLSKQD GTILSGPDIISRGFVYVRESEGLLDEANRIVTSTLNKLMNDNVNEWASLKTHVKDALGRF LYEQTRRRPMILPIIMEV >gi|333605254|gb|AFDH01000091.1| GENE 33 33917 - 34750 715 277 aa, chain - ## HITS:1 COG:lin1474 KEGG:ns NR:ns ## COG: lin1474 COG0329 # Protein_GI_number: 16800542 # Func_class: E Amino acid transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: Dihydrodipicolinate synthase/N-acetylneuraminate lyase # Organism: Listeria innocua # 1 269 10 280 293 303 56.0 2e-82 MVTPLNEQLEIDWDQVGPLVDYLIDEQGSEGLVVCGTTGESPTLTDEEKLKMIEAVVKHA NGRCKVIAGTGSNNTNHTIELSREAAKLGVDAILLVAPYYNKPSQEGLYQHFKAVAEAVD VPIILYNVPGRSIVNIDADTTIRLSRVPNIVATKDCSGTDQLTIVAAGAAEGFTVYSGDD SMTLPALAVGCHGIISVASHVVGKEMQELVEAYTSGDVKRAAQLNAKLLPVFTGLFCAPS PAPVKYALNLKGVNTGSVRLPLVDLSEQEQAFVASLF >gi|333605254|gb|AFDH01000091.1| GENE 34 34807 - 35802 976 331 aa, chain - ## HITS:1 COG:BH2400 KEGG:ns NR:ns ## COG: BH2400 COG0527 # Protein_GI_number: 15614963 # Func_class: E Amino acid transport and metabolism # Function: Aspartokinases # Organism: Bacillus halodurans # 3 331 75 402 411 370 58.0 1e-102 MCCGEWISAANLCSLIQAEGIPAVVMTGGQAGIETNDAYGNAQIVSVQPKRILEHLDRGE VVIVAGFQGQTADHEFTTLGRGGSDTSATAIGGALKAEVVDIFTDVNGILTADPRIVEDA RPLTRVSYAEICNMAHNGAKVIHPRAVEVAMQANVPVRVRSTFSKEEGTLVTNPDSLYGA EKRVEDRHVTGIAHFGNITQIQVPAAEGQYDLQLQVFKTMAQHSISVDFINVNPSGVVYT VFDHVAEKALELLRGLGYKPTSLSGCAKVSVIGGGMNGVPGVMAKIVEALTEENIRILQS ADSNTTIWCLVHGEDMVSAVRALHKSFQLHK >gi|333605254|gb|AFDH01000091.1| GENE 35 36119 - 37156 888 345 aa, chain - ## HITS:1 COG:BH2401 KEGG:ns NR:ns ## COG: BH2401 COG0136 # Protein_GI_number: 15614964 # Func_class: E Amino acid transport and metabolism # Function: Aspartate-semialdehyde dehydrogenase # Organism: Bacillus halodurans # 1 339 1 340 349 437 64.0 1e-122 MSNEKTFNVAVVGATGAVGEQIIRLLDERNFPIKELKFLSSPRSAGTKIRFKDRDITVEA ATPDSFKGVDIALFSAGGDVSKELAPIAAAGGTICIDNTNAFRMDPETPLVVPEVNIEEV HKHKGIIANPNCSTIQMVAALKPLYDRFGISKIIVSTYQAVSGAGSKAIDEMLRQSREAL AGNPVNPDILPVGSLPVKHQIAFNAIPQIDKFLDNGFTNEEMKMINETKKIMNDESLEVT ATCVRIPVVYGHSESVYVELKEDFELEEVRSLLADAPGIVLLDNPQEQQYPLATEAAGKL ETFVGRVRRDLHNKRALNLWIVSDNLLKGAAWNAVQIAEYFAQNK >gi|333605254|gb|AFDH01000091.1| GENE 36 37192 - 37788 460 198 aa, chain - ## HITS:1 COG:BH2402 KEGG:ns NR:ns ## COG: BH2402 COG0452 # Protein_GI_number: 15614965 # Func_class: H Coenzyme transport and metabolism # Function: Phosphopantothenoylcysteine synthetase/decarboxylase # Organism: Bacillus halodurans # 1 196 1 196 197 241 58.0 9e-64 MNWNGITVGFALTGSHCTLEEIMPQIQRFIDAGAAVVPIVSQSVLTTDTRFGKAVDWQKQ LKDMTGSDPITTIVEAEPLGPSKKLDVMVIAPCTGNTTSKLANAMTESPVLMAAKAQMRN HRPLVLAISTNDGLGLNSANIAKLLVTKNIYFVPFGQDAPEAKPNSLVARMDLISETCEA ALNGKQLQPMIIERFQYS >gi|333605254|gb|AFDH01000091.1| GENE 37 37785 - 38684 599 299 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_3397 NR:ns ## KEGG: Pjdr2_3397 # Name: not_defined # Def: dipicolinate synthase subunit A # Organism: Paenibacillus # Pathway: not_defined # 1 297 1 298 298 393 65.0 1e-108 MLTGAEVIFIGGDARQLEVIDKLIELDASVTLIGFDNLQKPFAGAANKQLSPEALEKADA LVLPVVGTDEQGRVESIFSGNELTLTPDLLGALPKHAVIYTGMAKTYLKQLCASQGLKLV ELLERDDVAIYNSIPTAEGALMFAIQNTDITIHGSQSMVLGFGRTGLTMARTLQGLGAKV KVGVRKPEHFARALEMGFTPFYTRELYQEVANIDLLFNTIPTMIVTAQIITNIPHRAVLI DLASKPGGMDFRFAEKRGIKAMLAPGLPGIVAPKTAGRILANTLSQLMVEDIRNGSGPE >gi|333605254|gb|AFDH01000091.1| GENE 38 38995 - 39474 449 159 aa, chain - ## HITS:1 COG:AGc548 KEGG:ns NR:ns ## COG: AGc548 COG0756 # Protein_GI_number: 15887664 # Func_class: F Nucleotide transport and metabolism # Function: dUTPase # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 3 153 6 156 156 155 58.0 3e-38 MENNTPVFPIRIKRLPGSEGLPLPEKMSAAASGFDLHAANIEPLDLAPGERALVPTGFAL AMPVELEAQIRPRSGLAYKHGITTLNSPGTIDADYRGEVKVLLINHGQETFTIRRGERIA QMVFQLVPAVLLTEVDELDDTTRGAGGFGHTGLTTEARK >gi|333605254|gb|AFDH01000091.1| GENE 39 39464 - 40720 1256 418 aa, chain - ## HITS:1 COG:BH2405 KEGG:ns NR:ns ## COG: BH2405 COG0612 # Protein_GI_number: 15614968 # Func_class: R General function prediction only # Function: Predicted Zn-dependent peptidases # Organism: Bacillus halodurans # 1 405 2 406 413 437 54.0 1e-122 MNKTHLNNGLRVVTEKIPTCRSVAIGIWVKTGSRNETQLNNGISHFIEHMLFKGTERHSA KDIAEVFDGIGGNVNAFTSKEYTCYYAKVLDEHLGIAVDILSDMFFNSVFNEEELEKEKN VIFEEIAMYEDTPDDLVHDLVAKAAYGSHPLGYTILGTQTHLSGMKPNDLRAYMKECYTI ENTVIAVAGNIDNSVFELLEKHFGHFNVSGTQKNQEEPAFMSERVFQAKTTEQNHICLSL PGLSLREENLYPMVLLNNAIGGGMSSRLFQEIREKRGLAYSVYSYHSSHIDNGVFTIYTG TAPKQTEEVLKVTIEMLNDIAEKGMTDAELRKGKEQLKGSLILSLESTNSRMNRIGKNEL MTGRHYTLDEMINRIESVEMEHIHALTRKLFSKPFAIAMVGSRDEALQSIRGDELLGK >gi|333605254|gb|AFDH01000091.1| GENE 40 40811 - 41872 722 353 aa, chain - ## HITS:1 COG:BH2406 KEGG:ns NR:ns ## COG: BH2406 COG0726 # Protein_GI_number: 15614969 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted xylanase/chitin deacetylase # Organism: Bacillus halodurans # 66 339 46 319 323 284 46.0 2e-76 MQKKKLVLLGGITAGCIWVLLQSESVHTFVGAIQQGKQPSVQTQTKLSNDAGGPKGNGKT AQPAEDALLARIREEAKGLYIAPIDAKVDRVWKAVPGYNGLEVDIDKTYEAAKKNGAGDK LPFVMKQVSPRVSLNDLPPEPIYKGNPKKPMVSFMINVAWGEEFLPSILETLRKENVRAT FFFDGSWLKKHVDIAKEIQKQGHELSNHAYSHKNMSTLSRSKAYEEIVKTEDLLKKELGV TNVLFAPPSGDFDAETVKIAAELKLKTVMWTLDTVDWKNSGAPAILAKVRKNIEPGSLIL MHPTQSSSSALPEMISIIKSRGLQLGSVSETLSPQRISAPAPGAGQAGEKRSG >gi|333605254|gb|AFDH01000091.1| GENE 41 42032 - 44137 197 701 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|170017041|ref|YP_001727960.1| 40S ribosomal protein S1 [Leuconostoc citreum KM20] # 556 690 226 353 396 80 38 2e-14 MEKRVQMDLAGRPLILETGRLAKQANGAVLARYGDTVVLCTVTASSEPKDLDFFPLTVNY EERLYAAGKIPGGFIKREGRPSEKAILSSRLTDRPIRPLFPEGFRNDVQIVAVVMSVDQE CPPEITAMIGVSAALSISDVPFSGPVGGVIVGRIDGNFVVNPTPAQEDKSDVHLVVAGTK DAIMMVEAGAAEVPEDVMLEAIMFGHDEIKKVIALQEQLVAEAGVPKMEVKLHTVDGEIN TAVREFAEARLVEAIKVQEKHARQEAIDAVNADAVAHFTALYEATPEKLKDVKEVLHDIV KDEVRRLITHDKVRPDGRALDEIRPIDVDINLLPRTHGSGLFTRGQTQALSVCTLGALGD VQILDGLDLEETKRFMHHYNFPPFSVGEARPLRPPGRREIGHGALGERALSYVIPSEAEF PYTIRLVSEVLESNGSSSQASICASTLAMMDAGVPIKAPVAGIAMGLIKEGEHFSILTDI QGMEDHLGDMDFKVAGTSKGVTALQMDIKIDGINRDILKQALDQAKAGRTFIMNKMLERI SEPKKELSAYAPKIVVMQINPDKIRDVIGAGGKIINKIIEETGVKIDIEQDGKVFIASSN AEMNERAKQIIEGIVRDVVVGETYLGTVKRVEKFGAFVEVLPGKEGLVHISQLSTERVAK VEDVVKVGDTITVKVTEIDNQGRVNLSRKATLVNNEVSTQS >gi|333605254|gb|AFDH01000091.1| GENE 42 44389 - 44658 422 89 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|192812893|ref|ZP_03041559.1| ribosomal protein S15 [Geobacillus sp. Y412MC10] # 1 89 1 89 89 167 93 1e-40 MALTQERKQELIQTHKTHESDTGSPEVQIAILTENIVNLTSHFRTHKKDHHSRRGLLKMV GQRRKLLAYLKNKDVKRYSALIEKLGLRR >gi|333605254|gb|AFDH01000091.1| GENE 43 44812 - 45207 286 131 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762565|ref|ZP_02169630.1| ribosomal protein S2 [Bacillus selenitireducens MLS10] # 1 128 182 313 317 114 46 8e-25 SELLGRGYGIRGVVVSGDKRGRQLGFPTANLQMSENFLVPASGVYAVRAFVGGSWYRAVM NIGTKPTFHSGEVMSLEVHLLDFDQDIYGSTVFVEFVDYLRPERKFNGIDELITQLKRDV ATAEAKFAQIL Prediction of potential genes in microbial genomes Time: Sun Jul 17 09:47:57 2011 Seq name: gi|333605204|gb|AFDH01000092.1| Paenibacillus sp. HGF7 contig00229, whole genome shotgun sequence Length of sequence - 42499 bp Number of predicted genes - 48, with homology - 40 Number of transcription units - 34, operones - 8 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 60 - 111 8.2 1 1 Tu 1 . - CDS 153 - 581 440 ## Pjdr2_2135 hypothetical protein - Prom 656 - 715 4.3 - Term 713 - 748 4.2 2 2 Tu 1 . - CDS 800 - 1456 686 ## COG0176 Transaldolase - Prom 1543 - 1602 2.7 3 3 Op 1 . - CDS 1952 - 2752 789 ## COG5578 Predicted integral membrane protein 4 3 Op 2 . - CDS 2742 - 2807 56 ## - Prom 3005 - 3064 4.5 + Prom 2793 - 2852 4.7 5 4 Tu 1 . + CDS 2892 - 2984 84 ## + Term 3038 - 3072 6.0 - Term 3013 - 3072 12.8 6 5 Tu 1 . - CDS 3077 - 4684 1457 ## COG0513 Superfamily II DNA and RNA helicases - Prom 4834 - 4893 6.2 + Prom 4892 - 4951 3.8 7 6 Tu 1 . + CDS 4986 - 5519 701 ## Bcer98_3469 group-specific protein + Term 5583 - 5617 7.6 8 7 Tu 1 . + CDS 5672 - 6379 582 ## Btus_2404 putative lipoprotein + Term 6419 - 6474 3.9 9 8 Tu 1 . + CDS 6579 - 6995 437 ## COG4876 Uncharacterized protein conserved in bacteria + Prom 7023 - 7082 5.3 10 9 Tu 1 . + CDS 7154 - 7975 977 ## COG1284 Uncharacterized conserved protein + Prom 7988 - 8047 4.8 11 10 Tu 1 . + CDS 8133 - 8321 240 ## + Prom 8346 - 8405 5.0 12 11 Tu 1 . + CDS 8455 - 8676 266 ## COG1826 Sec-independent protein secretion pathway components + Term 8700 - 8742 4.7 - Term 8747 - 8796 12.3 13 12 Op 1 . - CDS 8855 - 9751 837 ## COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) 14 12 Op 2 . - CDS 9778 - 10320 648 ## COG0431 Predicted flavoprotein 15 12 Op 3 . - CDS 10340 - 10558 326 ## - Prom 10607 - 10666 4.4 + Prom 10641 - 10700 3.9 16 13 Tu 1 . + CDS 10720 - 11676 1066 ## COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases + Term 11685 - 11744 6.5 17 14 Op 1 . - CDS 11602 - 11742 60 ## 18 14 Op 2 . - CDS 11840 - 12808 1026 ## COG0205 6-phosphofructokinase 19 14 Op 3 . - CDS 12851 - 13930 957 ## GYMC10_4613 protein of unknown function DUF2600 20 14 Op 4 . - CDS 13914 - 14543 621 ## MCA0776 hypothetical protein - Prom 14600 - 14659 3.3 21 15 Tu 1 . - CDS 14720 - 15034 255 ## BcerKBAB4_4461 hypothetical protein - Prom 15080 - 15139 1.6 + Prom 15331 - 15390 2.7 22 16 Op 1 1/0.000 + CDS 15457 - 16650 1159 ## COG0477 Permeases of the major facilitator superfamily 23 16 Op 2 36/0.000 + CDS 16643 - 17425 686 ## COG1136 ABC-type antimicrobial peptide transport system, ATPase component 24 16 Op 3 13/0.000 + CDS 17422 - 18819 183 ## PROTEIN SUPPORTED gi|163788031|ref|ZP_02182477.1| 50S ribosomal protein L9 25 16 Op 4 1/0.000 + CDS 18837 - 19934 1211 ## COG0845 Membrane-fusion protein + Term 19940 - 19983 1.2 + Prom 19955 - 20014 3.8 26 16 Op 5 . + CDS 20078 - 20725 535 ## COG0778 Nitroreductase + Prom 20760 - 20819 4.8 27 17 Tu 1 . + CDS 20844 - 21665 665 ## GYMC10_3999 GCN5-related N-acetyltransferase + Term 21701 - 21745 7.1 - Term 21689 - 21732 6.2 28 18 Op 1 1/0.000 - CDS 21742 - 23097 1449 ## COG2409 Predicted drug exporters of the RND superfamily 29 18 Op 2 . - CDS 23108 - 23986 857 ## COG2409 Predicted drug exporters of the RND superfamily - Prom 24057 - 24116 9.4 + Prom 24013 - 24072 11.9 30 19 Tu 1 . + CDS 24244 - 24873 554 ## Bsph_0771 TetR family transcriptional regulator + Term 24908 - 24947 3.7 - Term 24893 - 24937 7.2 31 20 Op 1 3/0.000 - CDS 24985 - 25182 251 ## COG1278 Cold shock proteins 32 20 Op 2 . - CDS 25271 - 25987 676 ## COG0500 SAM-dependent methyltransferases - Prom 26113 - 26172 5.3 + Prom 26125 - 26184 2.2 33 21 Tu 1 . + CDS 26254 - 26496 282 ## GYMC10_4616 hypothetical protein + Term 26612 - 26642 -0.6 34 22 Tu 1 . + CDS 26817 - 27653 946 ## COG0861 Membrane protein TerC, possibly involved in tellurium resistance + Term 27686 - 27727 5.8 + Prom 27734 - 27793 3.3 35 23 Tu 1 . + CDS 27813 - 28001 218 ## + Prom 28018 - 28077 3.4 36 24 Op 1 . + CDS 28127 - 30028 2148 ## COG1164 Oligoendopeptidase F + Term 30057 - 30093 3.0 37 24 Op 2 . + CDS 30109 - 30498 519 ## COG5416 Uncharacterized integral membrane protein + Term 30513 - 30564 0.2 38 25 Tu 1 . - CDS 30618 - 31478 1134 ## COG1836 Predicted membrane protein - Prom 31618 - 31677 4.7 + Prom 31532 - 31591 3.1 39 26 Tu 1 . + CDS 31634 - 31966 458 ## + Term 32009 - 32055 4.9 - Term 32002 - 32036 4.3 40 27 Op 1 . - CDS 32048 - 33376 1269 ## COG2843 Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) 41 27 Op 2 . - CDS 33423 - 34049 702 ## COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) - Prom 34100 - 34159 6.5 - Term 34105 - 34138 -0.2 42 28 Tu 1 . - CDS 34205 - 35425 996 ## COG5577 Spore coat protein - Prom 35600 - 35659 5.2 + Prom 35415 - 35474 4.9 43 29 Tu 1 . + CDS 35675 - 36886 1357 ## COG0477 Permeases of the major facilitator superfamily + Term 36970 - 37036 7.1 44 30 Tu 1 . - CDS 37116 - 37790 718 ## COG4122 Predicted O-methyltransferase - Prom 37930 - 37989 5.1 + Prom 37975 - 38034 6.5 45 31 Tu 1 . + CDS 38067 - 39227 951 ## COG0116 Predicted N6-adenine-specific DNA methylase + Term 39261 - 39305 13.1 + Prom 39463 - 39522 6.5 46 32 Tu 1 . + CDS 39619 - 39861 204 ## + Term 40031 - 40061 -1.0 - Term 39909 - 39972 7.8 47 33 Tu 1 . - CDS 40016 - 41245 1201 ## COG0477 Permeases of the major facilitator superfamily - Prom 41337 - 41396 6.2 - Term 41400 - 41436 5.2 48 34 Tu 1 . - CDS 41562 - 42497 1040 ## COG2309 Leucyl aminopeptidase (aminopeptidase T) Predicted protein(s) >gi|333605204|gb|AFDH01000092.1| GENE 1 153 - 581 440 142 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_2135 NR:ns ## KEGG: Pjdr2_2135 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 15 139 2 126 127 170 71.0 2e-41 MASSLDMLHEGGTTLKRTLVGLLRSFETTGEKAKDPELKTRYYKLSKDQVWEETVGMIKK TPGYKLLHEVKNVGEIVVEKRTALGRTQDITITLFAVNPTTTAIDIYSASRGNMGDLGSN YRTILDIYKQLDKKLAAYKISR >gi|333605204|gb|AFDH01000092.1| GENE 2 800 - 1456 686 218 aa, chain - ## HITS:1 COG:BH3785 KEGG:ns NR:ns ## COG: BH3785 COG0176 # Protein_GI_number: 15616347 # Func_class: G Carbohydrate transport and metabolism # Function: Transaldolase # Organism: Bacillus halodurans # 1 212 1 211 212 261 62.0 6e-70 MKLFLDTANVNEIKEAHELGVISGITTNPSLIAKEGRDFFETLKEIVGIVGDLPISAEVV ATDVEGMVQQGEKLAKIGSGIVIKVPMTADGLKATKRFSDQGIKTNVTLVFSSTQALLAA RAGATYVSPFIGRLDDINQVGMHLIEEVSQIISVHELPTQIIAASVRHSTHVIEAALLGS HIATVPFKVIEAMMKHPLTDAGVERFMKDWESANQKTF >gi|333605204|gb|AFDH01000092.1| GENE 3 1952 - 2752 789 266 aa, chain - ## HITS:1 COG:BH0488 KEGG:ns NR:ns ## COG: BH0488 COG5578 # Protein_GI_number: 15613051 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Bacillus halodurans # 1 233 1 208 216 102 27.0 7e-22 MEFRGLMGGFYRISEWIMRLSAINLLWILCSIPFFFFALAGLTSGQADIMMQSLVLMGIL APFTLFPSTAAMFTVARKWVTGDEDVPLFKTFFRGYKENFLQSMIGGIAFVLFALILFVS YRFYAGLDSALSLLSYMFLAMGILLIGAFFNFFCIMSHLHMKVLQIIKNAILLTIGNPVT SVMTIIGNVAIVIISFRFSFLLVFFAGSVSATFSFWQFNRSFEKIKRKQEAMEEAEREQE ENGQAAELDAAAVREDDSTKKESDKL >gi|333605204|gb|AFDH01000092.1| GENE 4 2742 - 2807 56 21 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLYKIGYNKNNINRGGQGFGI >gi|333605204|gb|AFDH01000092.1| GENE 5 2892 - 2984 84 30 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSGVGGAFTSTGAILVLFILLVIISRSFLY >gi|333605204|gb|AFDH01000092.1| GENE 6 3077 - 4684 1457 535 aa, chain - ## HITS:1 COG:BS_ydbR KEGG:ns NR:ns ## COG: BS_ydbR COG0513 # Protein_GI_number: 16077525 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Bacillus subtilis # 4 470 22 503 511 525 57.0 1e-148 MKNFSEFDLDAKVIKAITEMGFEESTPIQEKTIPLAIEGHDLIGQAQTGTGKTAAFGIPL VSKIEPSEDKIVALIMCPTRELAIQVAEEVSKLGRFKGIRSLPIYGGQDIGKQIRALKKR PQIIIGTPGRLLDHINRKTIKLEDVKTVVLDEADEMLDMGFMDDIQSILSLVPAERHTML FSATMPPNIQKLAQQFLTNPQHVSVIPKHVSAPLIDQAYVEVHEKQKFEALSRLIDMESP ELAIVFGRTKRRVDELAEALQKRGYAAEGLHGDLSQNQRDNVMRKFRDGSIEVLVATDVA ARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGTAWTFVTPREIDHLHFIEKVTR HRIPKKPMPSPAEAMEGKQKVTAERIINLLQEDKHNEFKGVAIQLLEEYDSVNLLAAALQ LLTGGEKKEVSVELTPEDPIRAKKRRVDVRSSGRKFNYGSDRRGDGRSGGGYGSRSGQGG SRYGSSSSRGRDGGRDYRDRDRDSRSGGGYGSRSGGSDYNRDRSSSTRRSEDSNA >gi|333605204|gb|AFDH01000092.1| GENE 7 4986 - 5519 701 177 aa, chain + ## HITS:1 COG:no KEGG:Bcer98_3469 NR:ns ## KEGG: Bcer98_3469 # Name: not_defined # Def: group-specific protein # Organism: B.cereus_NVH # Pathway: not_defined # 1 176 1 168 168 87 32.0 3e-16 MSIFKRVGNIIRSNKQQEPVRQANPFEESRVGDIVNVDLEEYVVSGKVIYFDRGFEPHRY AYYLQSGKDVRCLLIEKGRSYECFLCDFMEGALDDPNDVPSRLELDGEDTFELEHHRSDV TRTEGSTDFRSGDEVMIWRYFGPDDRYFFLQWQDGKFVAMQGERTPASQVKFMRATL >gi|333605204|gb|AFDH01000092.1| GENE 8 5672 - 6379 582 235 aa, chain + ## HITS:1 COG:no KEGG:Btus_2404 NR:ns ## KEGG: Btus_2404 # Name: not_defined # Def: putative lipoprotein # Organism: B.tusciae # Pathway: not_defined # 19 235 27 253 253 118 36.0 2e-25 MNRWTSWISGLLVFVLLTGCAPNASDFVRQEYNLTSADGSGSNLSKVYTAENKDVPVVAK ELADREKPREISKESQDQMFLLYPDKVINLQRDDQNPANTLVQVDTIQYAREHYSPSFLQ TFLTVAMLQSVLGGGFFNSRGVSDYRGYRSTPTYRGTPGGYSPGTGTGSTKPPVTSDREG SFRTPGSPSGTTGGIGAGTGAGDRRSEITNPGRTKRGIGTKPGTSGRSGSFKRRR >gi|333605204|gb|AFDH01000092.1| GENE 9 6579 - 6995 437 138 aa, chain + ## HITS:1 COG:BS_ydaT KEGG:ns NR:ns ## COG: BS_ydaT COG4876 # Protein_GI_number: 16077505 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 132 1 143 150 97 46.0 5e-21 MPWTKNDYPPSMKNLPERVRNKAVEIANALLDDGYEEGRAIAIATAKAEEWEENHPDHRS GGKSGTERRASSSPSSPLHVVPDGDGWAVKAEGEDKPRYEADTKSDAVKKADELASDANT RAVIHRKDGTVQNSHNYS >gi|333605204|gb|AFDH01000092.1| GENE 10 7154 - 7975 977 273 aa, chain + ## HITS:1 COG:BS_yitT KEGG:ns NR:ns ## COG: BS_yitT COG1284 # Protein_GI_number: 16078176 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 8 272 9 279 280 202 41.0 5e-52 MDKKAISIAVVILGAALVAFGFNMFLIPHELLSGGVSGIAMVIGYLTNMNISILYFVLNL PLIIWGLVIIGRRFIIISVGSVIATTWFMQIIPVRELVQEPILGAVFGGVLVGIGAGITM RAGGSTGGFDIVGSILTRKRDFPLGQMLFALNGGVIFLLGYFKNNWDLALFSMLSIYIAG KVIDTIHIRHIKVTAFIVTKQREALLEKLLVIPRGVTVIRTEGAYTNQEQSLLMTVTTRY ELVGLQKIIKETDPKAFVNVVETVGVFGEFRRQ >gi|333605204|gb|AFDH01000092.1| GENE 11 8133 - 8321 240 62 aa, chain + ## HITS:0 COG:no KEGG:no NR:no METVKLSHIVKTYTPELYTFLTRTELNSEIVLVNGIQSLDQEDVIEIVQFSINENRKDAF LQ >gi|333605204|gb|AFDH01000092.1| GENE 12 8455 - 8676 266 73 aa, chain + ## HITS:1 COG:BS_ydiI KEGG:ns NR:ns ## COG: BS_ydiI COG1826 # Protein_GI_number: 16077665 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Sec-independent protein secretion pathway components # Organism: Bacillus subtilis # 6 53 5 52 57 57 54.0 8e-09 MNFFSPWHLLLVVLVALLLFGPSKLPELGRGFGRMFREFKDATNGLVSDESNQAAPARKE VNTNSSVEEEARK >gi|333605204|gb|AFDH01000092.1| GENE 13 8855 - 9751 837 298 aa, chain - ## HITS:1 COG:BS_yccK KEGG:ns NR:ns ## COG: BS_yccK COG0667 # Protein_GI_number: 16077346 # Func_class: C Energy production and conversion # Function: Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) # Organism: Bacillus subtilis # 2 270 3 294 310 100 30.0 3e-21 MEKRILGRTGLQVSPLGFGGAEIGYQGIDPGTVENLLGRALDAGLTVIDTGECYKNSEEL IGKAVSHRRAEFSLFTKIGHGAGFQEEDWDLGMLEKSIDRSLKRLKTDYVDLLQLHSCPE EILRRGEVIGLLEKFKKQGKTRFIGCSGDGQAALYAVRTGVFDTLQTSLSIADQEAIELT IPEARQRGMGVIAKRPLANAAWRTGEKPADSYHHEYWERLKQLRYHFLNESVPEAIAYAL RFTLSVPGVHTAIVGTTRPGRWEENAAFLSRGPLPIEAIAEIRGRWQQASRGNWPGLR >gi|333605204|gb|AFDH01000092.1| GENE 14 9778 - 10320 648 180 aa, chain - ## HITS:1 COG:alr4777 KEGG:ns NR:ns ## COG: alr4777 COG0431 # Protein_GI_number: 17232269 # Func_class: R General function prediction only # Function: Predicted flavoprotein # Organism: Nostoc sp. PCC 7120 # 1 177 2 178 181 100 35.0 2e-21 MKIVIISGSNREGASTTLLSAYVGQVLTEKGAEVTLVDLYKQPVPLYSPDPSVVEDENLI HMKKTVMEADGIVLATPEYHGAMSGVLKNALDHMDAQYVDGKVVLSMSSAGGAVGVSSLQ QLQTVVRNLHGVNCPEWISIGGAGRTFNEQGEPETLQIRERILRTVTYFLSMTETFRKSV >gi|333605204|gb|AFDH01000092.1| GENE 15 10340 - 10558 326 72 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFLYKVELELKESLAYLIVVAETDAKAFDAVEGHLVRHFTVAPEVVQTTIIEKKRVGNGA GYVIESAVESPV >gi|333605204|gb|AFDH01000092.1| GENE 16 10720 - 11676 1066 318 aa, chain + ## HITS:1 COG:BH0949 KEGG:ns NR:ns ## COG: BH0949 COG0111 # Protein_GI_number: 15613512 # Func_class: H Coenzyme transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoglycerate dehydrogenase and related dehydrogenases # Organism: Bacillus halodurans # 15 318 13 316 316 233 40.0 4e-61 MLNITALTKMDLTYLQDHLPEDLKNAVSLQQFPTAEEAGDRLASTDILLTSGAFQDDWLP LLPKLRWFQSLSAGVDKLPLRQLDAKGIQVTNMSGVHSIQMSEYALSVMLDFVRRTHTLM ESQSRKEWNHRIRTAELHGQTLGLIGTGAIGSEVARKAKAFDMKVVGYSRSGRDREHFDD MRKGKSGLHSLLRESDFVVVIVPATRETENLIRAEELALMKPSAFLVNMARGSVIDETAL IEALRKGSLAGAALDVFREEPLPADSPLWGMEQAALTPHIAGNTPKYVERCAEILFPNIR RFIENQPLINRIDPDHGY >gi|333605204|gb|AFDH01000092.1| GENE 17 11602 - 11742 60 46 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIDTAAPSPVLSDSRPGAKRRLLITVVRIDPVDQRLIFDKTADIRK >gi|333605204|gb|AFDH01000092.1| GENE 18 11840 - 12808 1026 322 aa, chain - ## HITS:1 COG:BH3164 KEGG:ns NR:ns ## COG: BH3164 COG0205 # Protein_GI_number: 15615726 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphofructokinase # Organism: Bacillus halodurans # 4 321 1 318 319 348 58.0 1e-95 MTAVKSIAVLTSGGDSQGMNAAVRAVVRSALYHGVKVFGVQRGYQGLINNDITEMDLRSV GDIIQRGGTILQTARSKEFTTPEGQQLGAENLRNRGIDGLIVIGGDGSYQGANKLSKLGI KTMGLPGTIDNDIAFTDFTIGFDTAVSIVVDAINKLRDTMTSHERSSVVEVMGRHCGEIA LYAGLASGAETILVPEVPHDCQEIAKRMSDNFAHGKRHSIILVAEGAGKGDDIARQIMEH NGIDARVTVLGHIQRGGTPTHTDRILASRLGDFAVRRLIEGDSGKSCGVIKGELVATDID LVVNTKRPFNMELYNLALRLSQ >gi|333605204|gb|AFDH01000092.1| GENE 19 12851 - 13930 957 359 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_4613 NR:ns ## KEGG: GYMC10_4613 # Name: not_defined # Def: protein of unknown function DUF2600 # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 8 357 7 356 360 458 62.0 1e-127 MNLPNKPSLNVPRGPLGLMYRVYKYVLPGVKRELEGWRREAERIPDEELRTQAIASMTSK QFHCQGGAIYAVINLPMRQVLISLIVAFQTISDYLDNLCDRSTSLDPQDFRMLHQSMLDA VDPAAPLHDYYAYRLEKEDNGYLVKLVQTCQKSIAELPSYGLAADAVRSLVGLYCDLQVY KHIRPELREQALLDWWAEHSANYPDLTWNEFSAATGSTLGMFMLFAAASDRNLDRRRVEG IKSAYFPYVCGLHILLDYLIDQEEDRVGGDLNFCFYYADMDETIRRIAYVAEQAKEGTSK LEDAAFHRMVIEGLLALYLSDPKVKDQPVVRQISRNLMKDSTISRLFFWINSLVIRKTS >gi|333605204|gb|AFDH01000092.1| GENE 20 13914 - 14543 621 209 aa, chain - ## HITS:1 COG:no KEGG:MCA0776 NR:ns ## KEGG: MCA0776 # Name: not_defined # Def: hypothetical protein # Organism: M.capsulatus # Pathway: not_defined # 38 201 35 188 189 85 30.0 2e-15 MPTENEKPSWIRLIVKPLLGRQPSLYPIEEWDSLIDVRIDKLQVSALSGDNPDKEPYALA LKSGLYLLNESLDNSHEISQSITNETGSYWHGLMHRMEGDYSNAKYWLQDAGNHPIHTDL VNEVRSFLDRQPGLRAIEHEAMKAKIDVLVTSPEWNSSVFADAVELQVTLLQNPDIEAWL THIQYLEFKLLLAYCYRQCYGGELVELAE >gi|333605204|gb|AFDH01000092.1| GENE 21 14720 - 15034 255 104 aa, chain - ## HITS:1 COG:no KEGG:BcerKBAB4_4461 NR:ns ## KEGG: BcerKBAB4_4461 # Name: not_defined # Def: hypothetical protein # Organism: B.weihenstephanensis # Pathway: not_defined # 5 103 5 104 105 114 61.0 2e-24 MTCRFIFDERLGIPVPEFDKEWEEYSLRERESILFQWEQIRGTIPDRIKQLEGQIIAKQN KLNVEDDFPASCALNSQIADLASAINDLHLWFRTNQEVEGKIHG >gi|333605204|gb|AFDH01000092.1| GENE 22 15457 - 16650 1159 397 aa, chain + ## HITS:1 COG:BH2276 KEGG:ns NR:ns ## COG: BH2276 COG0477 # Protein_GI_number: 15614839 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus halodurans # 1 375 2 376 392 168 28.0 2e-41 MKKQNDFVLRGFTFSYYMMMAIIASFFPLYFDSRGYSKAEIGLLYSIGPMVSIFANLAWG FASDRLQKIKPIMITLYVGQLVFVVSMFGTDSFTVLYALMAGFYFFQQPAQSLNDSQLLL HASQTGKSYSSFRIFGSIGFAFSALFFGLLIKETNIGLTSSISIAVIVIGLIFTFGLVDT RVAYSKMDFKGMGKVIGSPRLLIFLLLVLIMSISHRINDGFLALHLRELGASDMTVGTAM MLSSLSEIPVFFLLGKYGNRYKELPLLAIAGLMYAIRFLIVSLSDQTGWVLFAQTMHSVT FGIFFVTALRYLAQIIPDEYRASGQAIFAVTWSGLAGIISGRFGGLIYADYGSTVLYGIG SGLAVAAAAGFLVFHARLNALEARLTAISTKKEDSHA >gi|333605204|gb|AFDH01000092.1| GENE 23 16643 - 17425 686 260 aa, chain + ## HITS:1 COG:BS_ytrE KEGG:ns NR:ns ## COG: BS_ytrE COG1136 # Protein_GI_number: 16080094 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, ATPase component # Organism: Bacillus subtilis # 1 219 1 223 231 216 48.0 3e-56 MLEVSGLSHTFLSGTEQSQVLKDINFTVNKGEIVALLGSSGSGKSTLLNLMAGLMKPTEG SILIDGQPIERMSENKLAEFRRHHIGFIFQSYELISHLTVRENVELPLVFQSVKPSERRE RAMSLLTQVGLAEKTELFPSQLSGGQQQRVSIARSLITRPPVVFADEPTGNLDTKTEKEI IDLLLELNRTLQLTFIIVTHEREVAARTQRVIQLKDGRLAEDSDYLHGEDETAAALADEA PPAIAPDPPLHAGQAGGERP >gi|333605204|gb|AFDH01000092.1| GENE 24 17422 - 18819 183 465 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163788031|ref|ZP_02182477.1| 50S ribosomal protein L9 [Flavobacteriales bacterium ALC-1] # 335 465 294 413 413 75 29 6e-13 MKMRDYMGLGWDQLKRRKVVTALCALGISIGSAAIVVALAVGESASHYSEQQMKAYLKTD EITIRNDQSQDQGSEGSASDKSGSAAGSITNQKLDLIRTLPHVKAVASFQQVGHFFFKLD DGKIGSFELVATDLDTLEKFGHEFQQGGPSDIENTIILNPGATMGLLDEETMKNRDRQMR ANQNDPTLWETFREFDKIPTSLYQKKITLTLEHPSASKGKAQAQIPVRVAGVLKKGESVP SNMVMYDKKGYISHALAKQIREAIKASAPPDSETAKRMGAGESYSEVLVKVENSSHIETV DKQIQKLRLNTQNNLHQEERMQGEFVIIRVVFLGVGLFVLFIASISIVVAMTMSTYQRRR QIGIMKVLGANLRQIRNMFIVESALLGLLGGILGILLSYWVVWGINALTFMMGKNSAGED SQILFISTWILPVGLFFAIMTGVLSGIYPAVKASKTDALTAIKRE >gi|333605204|gb|AFDH01000092.1| GENE 25 18837 - 19934 1211 365 aa, chain + ## HITS:1 COG:AGl492 KEGG:ns NR:ns ## COG: AGl492 COG0845 # Protein_GI_number: 15890353 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-fusion protein # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 55 363 103 395 414 70 23.0 7e-12 MKKKIWALAAAVVVIGISAFLYIKSHPQTGPNPADMAMNNPLSFKVTREELVGSIEVKGK SSYEKETWVHAPFSGDIVKWNVTEGAQVKKGDSLFVLDSAAIDAEVVQMQANLKKQDLEA QLAKFQERSAQAPAGSGESGDGMSESDAKKRYVDAESAKVQAQLNTMNRETAQNQLGEKQ KMLAKANFKAPESGIFLFEDSSKIPQALQANNRIGKIVDLSKLELLCYVGEFDVFQIKPD MPVQVKINALADVPLKGKVKQVSKFAKSGTEAATSATAQFEVIVSLEPNDRLIAGLSLTG TIETARKADALVVPTLAVQRDKDKHFVMLETPGGVERKEITIGMETADKTEVVSGLNEGD TVVLQ >gi|333605204|gb|AFDH01000092.1| GENE 26 20078 - 20725 535 215 aa, chain + ## HITS:1 COG:MA1774 KEGG:ns NR:ns ## COG: MA1774 COG0778 # Protein_GI_number: 20090624 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Methanosarcina acetivorans str.C2A # 10 215 38 220 220 74 27.0 2e-13 MNYEDFKSVVLERRSVRKFTEDPVSVEDVRELIDCARYAPSDTNSQTWKFIAVMNGDLIK TIEDVTWEELHKRAADAEERGLSREGRLLVKSFGPYATAFSGAPVLIICLATPYESKFRE RIFDPIKLVENSVWDEEGIKSSCLAAQNLMLAAHARGLATCPMTGPVLLAQHRLRELLPI PEEAQVNMVIALGHPQERPGKLARKEVDEILEIIN >gi|333605204|gb|AFDH01000092.1| GENE 27 20844 - 21665 665 273 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_3999 NR:ns ## KEGG: GYMC10_3999 # Name: not_defined # Def: GCN5-related N-acetyltransferase # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 269 1 266 275 224 40.0 2e-57 MAQLPVLTQELVKRLEQAETAFWTSRIEAIGSREGNPMGVHTARFGHTSAVCTEHMPWPL FNTVRGLGSGDVGELGAILRFYAEYGRSCTFELTPGKADKSVTYALARQGFYQESFHAYM YGLPEPIAPVLPPHIRIEPITSTDRFDLYGELHCVGTGMDISAKQHFIDNNIVLLNRPGW HMYVGYVNDEPAGVSVMHIDGDIASFTLAATMPEHRGRGLHTAMLQVRMHEAAKRGCRLV AAQAAFGSVSQNNMERAGMRLAYTRAVWSALGE >gi|333605204|gb|AFDH01000092.1| GENE 28 21742 - 23097 1449 451 aa, chain - ## HITS:1 COG:lin2557 KEGG:ns NR:ns ## COG: lin2557 COG2409 # Protein_GI_number: 16801619 # Func_class: R General function prediction only # Function: Predicted drug exporters of the RND superfamily # Organism: Listeria innocua # 2 436 321 738 744 412 53.0 1e-114 MKEALLGSGGAIGMSGLTVIVSMLALLFAKYGANHRFAIPFSLAVFIMAAASVTLVPAIL GILGRKSFYPFAPLTPEQRAVKEAKRGKPVRGQRAVGRMSETLGRMVTEKPKTILVVSLV VLIALAGVSSQIKYTFNLLSSFPETMPSREGFTLLSEHYSPGTLAPAKVMVDTEGNKVDA GARLKALSFVDSVSEPVKGKTNPDIVAYDVLFKDDPFELESIHHIPDLYAAAEASLQDAG VANAGSHVRVSGQTAEQYDTEKVTSKDTKVVIPIVIGIIALLLLVYLRSLVAMVYLMATV LLSYFSALGAGWLILHTFFGTEAIQGLIPLYAFVFLVALGEDYNIFMVSGIWKASKTHKL KEAIRLGVSSTSSVITSAGLILAGTFAVLSVLPIQVLVQFGVICAVGVLLDTFVVRPFLV PTITLLLGRAAFWPGKPGTPADERSASRPGI >gi|333605204|gb|AFDH01000092.1| GENE 29 23108 - 23986 857 292 aa, chain - ## HITS:1 COG:lin2557 KEGG:ns NR:ns ## COG: lin2557 COG2409 # Protein_GI_number: 16801619 # Func_class: R General function prediction only # Function: Predicted drug exporters of the RND superfamily # Organism: Listeria innocua # 6 279 29 302 744 219 46.0 4e-57 MKSSSFMEGMLSRVAGPRSKWVTVAVWIVLTVLLSALWPGVNSQENNAADQLPADSLSVQ AAALEKEQFPASGGVPALVVFYRQAGLTEGDLGALQKIAGRLTETPLPEQASVAPFDKLP LPALKQSVSKDGTTIVLPVSFKEKTETKVLKESAAKLKEISAAVTGSDPFAVKDLKGEGL IARITGPVGISMDANDLFKGADFSLLMATVILVLVLLILLYRSPVMAIVPLVGVAFAYGV ISPILGKLAQLGWIVVDAQSISIMTVLLFGAGTDYCLFFCNPVPDGASGARE >gi|333605204|gb|AFDH01000092.1| GENE 30 24244 - 24873 554 209 aa, chain + ## HITS:1 COG:no KEGG:Bsph_0771 NR:ns ## KEGG: Bsph_0771 # Name: not_defined # Def: TetR family transcriptional regulator # Organism: L.sphaericus # Pathway: not_defined # 10 206 3 199 200 137 34.0 4e-31 MSSTSRKSPGRPRSSEQAAPVSDRILQIAMHEFIRSGYDAVSMDDIAKASGVTKASVYYY FPSKAVLLTESTIRLMNVVRAATLKILQKPLPLRERLLEVTYNHLQATTSFDFEGFMNKI ETVLTPEQTENMRKAEHQLLEALADAFAEASDKGEIRTADCWLAARSYMALLMIGHSKQP DGTFTYPDKRLAADKIVSMLWDGIGNSHP >gi|333605204|gb|AFDH01000092.1| GENE 31 24985 - 25182 251 65 aa, chain - ## HITS:1 COG:BH3610 KEGG:ns NR:ns ## COG: BH3610 COG1278 # Protein_GI_number: 15616172 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Bacillus halodurans # 1 65 1 65 65 94 78.0 4e-20 MKGTVKWFNAEKGYGFIQVEGGEDVFVHFSAIQGDGFKTLDEGQEVEFEITDGNRGPQAA NVTKL >gi|333605204|gb|AFDH01000092.1| GENE 32 25271 - 25987 676 238 aa, chain - ## HITS:1 COG:MA2906 KEGG:ns NR:ns ## COG: MA2906 COG0500 # Protein_GI_number: 20091727 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Methanosarcina acetivorans str.C2A # 8 190 40 217 261 118 37.0 1e-26 METKRFYEQTGVAMTCRNFEEYVRMFDLEPEQLRGKRVLDTGAGASAFTAEASRREIKAS AADPLYAMGPSEIEGLGLEEIDRFIAKLTERRHMYNWDFYGEPVLLKELRKQSFADFAAD YANPASREERYTAASLPELPHSEGEFDLVLCSHFLFLYGEQFSPEFHLQAMRELLRVCKP GGEVRIYPLLTFGGEVYPQLPELLAELAGEGVSAAYRPTRLAFIPGSRDYLTLHKVAD >gi|333605204|gb|AFDH01000092.1| GENE 33 26254 - 26496 282 80 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_4616 NR:ns ## KEGG: GYMC10_4616 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 4 80 1 77 77 104 67.0 1e-21 MSHVIKKHVIFKRDKWNMVTVEVNGSRLVAREISDQWGEDTHTFLSRPALMHWAQERFPR DSFEGTDEEYDAMMEAFRNV >gi|333605204|gb|AFDH01000092.1| GENE 34 26817 - 27653 946 278 aa, chain + ## HITS:1 COG:RSc0949 KEGG:ns NR:ns ## COG: RSc0949 COG0861 # Protein_GI_number: 17545668 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane protein TerC, possibly involved in tellurium resistance # Organism: Ralstonia solanacearum # 1 218 1 223 230 175 52.0 9e-44 MDWFSTASLLTLLNIIIIDLVLAGDNAIVIGMAAKNVPKNLQKRVILWGTAGAVGIRVVA TVLVVYLLQIPGLLFVGGLLLVWIALKLLTDKSDHDNIAAKNTVGAAITTIIAADAAMGI DNVIAIAGAAHGHIGLVIIGLLVSVPIVVWGSTIFIKVVDRFPIVMYIGSGVLAYTAAKM LTEEKFIMHDYFSANPLVKWLFIAVVIVGVLVTGYVVKMSGYSVKINDRGQLTLPKHVGH EANIAPEDRFTVQSDPSGRLVFVKVGPDKDPKSVKSAG >gi|333605204|gb|AFDH01000092.1| GENE 35 27813 - 28001 218 62 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MGISNDVLLFIIAGFAFALLVLYSRNRIPEQLRRPMAIFALILVVCSFSLVVVSLFKLGM AG >gi|333605204|gb|AFDH01000092.1| GENE 36 28127 - 30028 2148 633 aa, chain + ## HITS:1 COG:BH2856 KEGG:ns NR:ns ## COG: BH2856 COG1164 # Protein_GI_number: 15615419 # Func_class: E Amino acid transport and metabolism # Function: Oligoendopeptidase F # Organism: Bacillus halodurans # 41 631 5 597 598 633 52.0 0 MRLLPIALMAGLLVSTLVPGSGAHPAANPKSSVRRVPMNQIPVRKDVPAEHRWKLEDLFA NQEAWNKEYNETKEALGKIGQFHGKLSDPAAVKQCFELEDDISLHTERLYVYSNMKHHED MTDPTYQALSDKAQKLSVEVSQALSFISPEIVSLSEEQLKALVENKDLAPYKTTLEEMIR QKPHVLSKEEEALLAMAGNMSGAPSNIFGMINNADMKFPKVKNENGEEAELTHGSYIQFL ESRDREVREQAFKAVYETYAKQKNTIAATLSSNINKNIFYSQARKYPSVLEMSLFGDNIK PEVYTNLIETIHESLPLLQRYMKLRKKLLKLDELHMYDLFVPLVDDLKMKVTYDEAKETI KESLAPLGKSYVETLEKGYNDGWIDIYENQNKRSGAYSWGAYGTHPYVLLNHKENLNSMF TLAHEMGHAIHSYLSDENQPYRDAQYTIFLAEVASTLNEALLMDYLLKHTDDPKKKLYLL TYYADQFRTTVFRQTMFAEFEKITHEKMEKGESLTAQEFSKIYYDLNTLYHGKEMVVDKD IEMEWARIPHFYNSFYVYKYATGFSAATSFSKQILDEGQPAVERYLGFLKSGGSDYSINI LKKAGVDMSTPEPIKQAMSVFASVLDQMEELTK >gi|333605204|gb|AFDH01000092.1| GENE 37 30109 - 30498 519 129 aa, chain + ## HITS:1 COG:BS_yrvD KEGG:ns NR:ns ## COG: BS_yrvD COG5416 # Protein_GI_number: 16079817 # Func_class: S Function unknown # Function: Uncharacterized integral membrane protein # Organism: Bacillus subtilis # 7 109 4 106 107 70 38.0 8e-13 MKSNRIQWLLIGALIFALITTVFAVVNMDQVRVNFVFMETNAPLILVIVISTVLGGLIVG LFGILRQVQMQKEIKELRKQLKGSAVPADTEVLPGTAAAEAASASYEDRLPGEESPVQKE FGKNNSGAL >gi|333605204|gb|AFDH01000092.1| GENE 38 30618 - 31478 1134 286 aa, chain - ## HITS:1 COG:BH1418 KEGG:ns NR:ns ## COG: BH1418 COG1836 # Protein_GI_number: 15613981 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Bacillus halodurans # 20 277 16 259 262 115 34.0 9e-26 MSGMDVWIGLLGSVLVAGAAYSKRSLTASGAAAAVVLGTLMYSLGSAAWFGTLIAFFVAS TLLSKYKHKRKAAIESGYAKSGNRDAGQVAANGGLGLLLCIGSVIAPHPAWWAAFVGVMA AVTADTWATEIGGLSRTAPRSILTGRKVAPGTSGGVTALGLLATCAGGLFIGAAAWLLAR LGSGAVTGAAHAVGAQHPLETLLPLLAAGLAGGLAGSLSDSLIGAKWQAMYRCAVCGRDV ERGSHCGSPAEPLRGFAWMTNDAVNVIGSLFGGAAALAAALLAGWL >gi|333605204|gb|AFDH01000092.1| GENE 39 31634 - 31966 458 110 aa, chain + ## HITS:0 COG:no KEGG:no NR:no METNQNKPNEDINPITDENKHNPYTNQKNNVRKYENEDLESVKEHEYHDAKQNSANRDIN EVMNGSMAPNMDEIKQLGKDMEGMKTNEDLTEEGLLPDPIQNEREEEASR >gi|333605204|gb|AFDH01000092.1| GENE 40 32048 - 33376 1269 442 aa, chain - ## HITS:1 COG:BS_ywtB KEGG:ns NR:ns ## COG: BS_ywtB COG2843 # Protein_GI_number: 16080641 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) # Organism: Bacillus subtilis # 137 372 63 298 380 145 36.0 1e-34 MKKQRLTLLIVSAIFSAVLLTGLLLVKIKMDAASVPPAASSSERPVAKTPGDNQPASSAV PAPEKSPVPAASSAPDKAEESAEAAASEPTGNKEAKPADKPANPGVAKATEKPKGSQDTA PAVRKKVGDHEAVDLIFAGDALMDWSVKETIKKKGPDYPFQFVKKEVSKADYAFVNLETS VTDATEKDTNQLYNFKSDPPSLKGLKNAGFDLVSIANNHVLDFGRQGFLDTLNHLKQTGL PYIGGGRNAAEAYKAKTVEINGARIKFLAFSRFIPTRDWFAGPDTPGIAQAYDKSAVLPV IRQESKDADYVFVYMHWGVEKNHKPEEWQRTFAKEMIDAGADGIIGSHVHVLQGFEFYKG KPIAYSIGNFLFPDYVKDAKADTGLLKLKLINGKITAEFNPYYIQKDQIVKRDAAYDKKQ MDFLQSISYGVKIRGKAIEPAS >gi|333605204|gb|AFDH01000092.1| GENE 41 33423 - 34049 702 208 aa, chain - ## HITS:1 COG:BH1071 KEGG:ns NR:ns ## COG: BH1071 COG0179 # Protein_GI_number: 15613634 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) # Organism: Bacillus halodurans # 5 208 3 206 206 231 50.0 7e-61 MTGTVRNIYCVGRNYKLHAAELGNDVPEEPMIFTKPTHALAAMEGDLLELPQGKGEIHYE GELVLHISKPYSPGMTVDELVDSFGLGIDFTLRDVQSVLKKKGHPWLAAKGFLNSAALSP LRPFPGAAELEKTEFKTVRNGETVQRGNIGELIFPLQAIVDYVAANYGLGAGDLIYTGTP AGVGACADGDVFELLWGAETFGRCTVKL >gi|333605204|gb|AFDH01000092.1| GENE 42 34205 - 35425 996 406 aa, chain - ## HITS:1 COG:BS_yhcQ KEGG:ns NR:ns ## COG: BS_yhcQ COG5577 # Protein_GI_number: 16077983 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Spore coat protein # Organism: Bacillus subtilis # 4 194 25 213 217 61 26.0 3e-09 MPFGAHETLEVHEVLTEKINMIRHFSFYARQARHPQVKAIAEHHLQAGVQHYNELVAYTH DYSAARGQAPYGQPPFVSVQDILYGLRHPAPVSPETDGSFNDEQILSAMLCCHKNNAKNQ MTAALECADPNVRRMLLTAADAAADHAYEVFLFMNSQGQYQVPTLHDHTAKTYLHTFQPV HEADFGQTAGNYGQGYGYAQEFGHAPDYGQNHLYGYPGAGGSQPHQQSRPQQSYQPHIHQ PGDYGYNGGYSSQPDNGGYSAYGRTETGYADHSYGSSAYRGQGQQPDAYGSSQPSSYTGG GTSGYGAAYGYESAGQQALYQTPNPSYTQASNSSYQGDRNYTPQTGSGTQQQHQSGYAAS AAGTRQASHAQTSVNSQRGGQEEKTDEPDSGALTSKAGESSSNPIQ >gi|333605204|gb|AFDH01000092.1| GENE 43 35675 - 36886 1357 403 aa, chain + ## HITS:1 COG:BH2592 KEGG:ns NR:ns ## COG: BH2592 COG0477 # Protein_GI_number: 15615155 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus halodurans # 1 383 1 380 409 359 51.0 4e-99 MINWRVNLAVLWVGQFFVMAGMTMIMPFLPLYLKEMGLQDAQEIATWTGIIFAGNFVTSF LFQPFWGGMADRYGRKVMLLRSGFGMAAVMTTMGFAHAPWVLLLLRLVNGTISGYAPASV ALMSTNTPREHIGFAMGTLQSGAVAGSILGPFIGGLLAELIGFRYIFYVTGAMLFIASMV TMLLVKEKFNAAEAKKQPKISVIQGYKDLRPIRQLPTLYSITFVIQFSIQCSMPLMALFV EELHGSGELLAFYAGLVASITGFSNMVAAPLLGKLSDRIGPQRILFVSLIGAAIFFIPQA FVQNVWQLMAARFCLGIFIGGLLPTVNSLIRTYTPVGMESRSYSFNTSALALGNMMGPVI GGALSGFLNIRELFLFATVMLAINAAWSYRTLLGKHKISDGTL >gi|333605204|gb|AFDH01000092.1| GENE 44 37116 - 37790 718 224 aa, chain - ## HITS:1 COG:BH1828 KEGG:ns NR:ns ## COG: BH1828 COG4122 # Protein_GI_number: 15614391 # Func_class: R General function prediction only # Function: Predicted O-methyltransferase # Organism: Bacillus halodurans # 22 224 14 222 223 154 39.0 1e-37 MEKRTVQTNGGSEKAAPGPEEYLEALYAEDEALALVKEAIRDNNMPDISVAPGYGRLLTM LVGLTGAKRVLEIGALGGYSAICLARGLGDGGQVLSLEVNAAFAETARQNVTKASFGDKI GYRVADAVESLAALKEEGAKFDFFFIDADKVNYPAYLDYAIELANPGAIIIGDNILMRGR TIDAAVTKKSVEAMREFNRRFASDPRLESTMLPAYDGLAVARVK >gi|333605204|gb|AFDH01000092.1| GENE 45 38067 - 39227 951 386 aa, chain + ## HITS:1 COG:BH1771 KEGG:ns NR:ns ## COG: BH1771 COG0116 # Protein_GI_number: 15614334 # Func_class: L Replication, recombination and repair # Function: Predicted N6-adenine-specific DNA methylase # Organism: Bacillus halodurans # 1 377 1 378 385 437 58.0 1e-122 MAKLDLIATCPMGLEAIVAREVKELGYEDVTVENGRVTFTGDELAICRTNLWLRTADRIL VKMGQFEARTFDDLFEGTKALDWPAWIPEYGEFPVEGRSHKSQLSSVPACQGIVKKAVVE KMKERYQTEWFEEDGPRYVIEVALLNDIATLTIDTTGPSLHKRGYRKLVTEAPLKETMAA ALINLSRWKPDRPLYDPFCGSGTILIEAAMSGWNIAPGLRRSFPSEDWDIIGQDRWEQAR EEAYDSLNDDIPLEIAGSDIDPKAIEVAEAAAKAAGLSKELKFYVEPVAKAKPRSDFGCL ITNPPYGERLGEQKEVERVLRQLGQLTGSLHTWSTFVLSPSKQLEHYFTRPADKRRKLFN GRIECQLYQYFGPLPPRRRNTEPVDQ >gi|333605204|gb|AFDH01000092.1| GENE 46 39619 - 39861 204 80 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MQGILALVLFFISMLMFAALVQSKSKGQNQRFRFLHHPLFRKTAVVVSVLAFLLAVVVSP KADEGLQTEAKLTTAAVTVR >gi|333605204|gb|AFDH01000092.1| GENE 47 40016 - 41245 1201 409 aa, chain - ## HITS:1 COG:BH3211 KEGG:ns NR:ns ## COG: BH3211 COG0477 # Protein_GI_number: 15615773 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus halodurans # 31 390 7 368 388 267 41.0 3e-71 MNRIRHFLSSYHPLVHTLLFGTVMARAASSMSMPFLALYLVATTDMSKGMIGLVIGASSL AGTVGGFIGGTLSDRIGRKAVMQGALFTWAAVFVGFSLVTHPLLFLLLNLISGLCRSFYE PVSQALMADLTEKEKRLQVYSLRYLAINVGVAVGPLLGAAFGMVKGSLPFLLTGIVYLFY GIFLVVMMRKFKVQTVSKEVKERVTFAAAWRVVRKDMILRYQLLGGMIGAIGYSQMSITL SQYVNENFAQGVKLFAAMMSVNAVTVIVLQIPLSKLADRKSPLTAIVVGNLLFALGDVGF ALSNHWLLLIASMVVFTIGETLNFPASTMLMDKIAPDHMRGTYFGAQTLTSLGHFVGPWI GGLLLASIGGNMFLVMAVVTVTSSFLYWRGSHLLTKRIEGEYTSATGSV >gi|333605204|gb|AFDH01000092.1| GENE 48 41562 - 42497 1040 311 aa, chain - ## HITS:1 COG:PH1048 KEGG:ns NR:ns ## COG: PH1048 COG2309 # Protein_GI_number: 14590885 # Func_class: E Amino acid transport and metabolism # Function: Leucyl aminopeptidase (aminopeptidase T) # Organism: Pyrococcus horikoshii # 1 311 7 320 320 247 45.0 2e-65 LIEISKSLLQSSLGVKPGELLVVVADDYKKELAEHVHQAGLELGADASLVVMKHREKSGE EPPAPVAAAMREADVAICLTQHSLTHTGARKAAAASGTRVATMPTITEDMFREGAISADY AQVRELTERVTARLTAGSRVKIEKEHTALTFSIAGRAGVPSTGVYLNPGESGNLPSGEGY IAPVEGSASGTLLVDGSIAGLGKVTSPLTLTVENGRLVGADGEQGEALLAVLGDGDGRLL GEFGIGTNDKARITGVVLEDEKVYGTIHVAFGSNNTFGGTVAAGVHIDLMVLSPRVYIDD ELILENGRLLV Prediction of potential genes in microbial genomes Time: Sun Jul 17 09:49:12 2011 Seq name: gi|333605202|gb|AFDH01000093.1| Paenibacillus sp. HGF7 contig00270, whole genome shotgun sequence Length of sequence - 3309 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 3308 3183 ## COG1020 Non-ribosomal peptide synthetase modules and related proteins Predicted protein(s) >gi|333605202|gb|AFDH01000093.1| GENE 1 2 - 3308 3183 1102 aa, chain - ## HITS:1 COG:BS_ppsA_2 KEGG:ns NR:ns ## COG: BS_ppsA_2 COG1020 # Protein_GI_number: 16078895 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Non-ribosomal peptide synthetase modules and related proteins # Organism: Bacillus subtilis # 217 1102 2 834 1516 794 45.0 0 YRTGDLARWTADGNVDFIGRIDHQAKIRGYRIETGEVESQLLQADGVREAVVIVREDGSG QKALCAYYTADGELAASSLRSALAQELPGYMIPSYFIRLERIPLTPNGKVDRKALPAPEA GADGGAEYIAPRTPLEAKLCAIWQDVLGLQKEVGIGDNFFDLGGHSLRATTLVGKVHREL NVDLPLRDVFRHSTVEDMAEAIANMERQEHVSIPAVEQREFYPLSSAQKRLYILNQLEGA ELSYNMPGTLILEGALDRNRFEEAFRSLIQRHETLRTGFEMANGEAVQRVYPDVDFSVEH VGASEEEAAETVLAFVRPFDLAKPPLIRVGLVELAVERHLLMFDMHHIVSDGVSMDVLVE EFVRLYSGEELEPLRIQYKDYAVWQQSVGQKEQLKRQEAYWLNVFRGELPVLELPTDYAR PALQSYEGRTLQFSMDAQKSEGLKRLAAETGTTLYMVLFAAYTVMLHKYTAQEDLIVGTP IAGRTHGDVQPLIGMFVNTLAIRNYPAADKTFLSYLQEVKETTLGAYEHQNYPFEELVEK VQVARDLSRNPLFDTMFTLQNTENKELQLPGLRLAPYASEEIVSKFDLSLDVTEVYGGLD YLFEYATSLYKKETIERMAKHYEQLLNAIVKSPKAKIADLDLVTPSEKEQLLEAFNPAMS ELPQVQTFHRLFEEQAVRTPDAAAVVYTDKQLSYRELNERANRLAGALRAGGVGRESIVG ILAERSVELLVGVIAVWKAGGAYVPLDPDYPADRIRFMLEDSGATVLLTQTSLRESAAAW LEAKETALRAILCLDDEQSYSGDGENVAIGSLTMGNANDSAESARVSADQGDSAALGSTA DNGSDGSLSATGMPDGVPAETRPHDLAYVIYTSGTTGRPKGVMIEHGSLVNTAAAYRQEY RLDRFPVRLLQLASFSFDVFVGDIARTLYNGGTMVIVPKDDRIDPARLHGWIQEQQITVF ESTPALIVPFMEHVAQHELDMSSMELLITSSDSCSVGDYRVLQERFGSQFRIINSYGVTE AAIDSSFYDEPLAKLPETGSVPIGKAWLNARFYIVDAHLNPVPVGVLGELCIGGPGVARG YLNRPDLTEEKFVDSPFVAGER Prediction of potential genes in microbial genomes Time: Sun Jul 17 09:49:16 2011 Seq name: gi|333605193|gb|AFDH01000094.1| Paenibacillus sp. HGF7 contig00190, whole genome shotgun sequence Length of sequence - 13398 bp Number of predicted genes - 8, with homology - 8 Number of transcription units - 3, operones - 1 average op.length - 6.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 789 - 848 5.4 1 1 Tu 1 . + CDS 901 - 1146 102 ## VSAL_I0960 DNA methyltransferase - Term 1577 - 1623 5.2 2 2 Op 1 5/0.000 - CDS 1708 - 3537 1950 ## COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains - Prom 3675 - 3734 4.8 - Term 5015 - 5054 8.2 3 2 Op 2 6/0.000 - CDS 5131 - 6471 1364 ## COG1109 Phosphomannomutase - Prom 6538 - 6597 3.1 - Term 6548 - 6581 -0.5 4 2 Op 3 7/0.000 - CDS 6599 - 7927 1253 ## COG4856 Uncharacterized protein conserved in bacteria 5 2 Op 4 2/0.000 - CDS 7920 - 8735 714 ## COG1624 Uncharacterized conserved protein - Prom 8794 - 8853 5.2 - Term 8849 - 8887 -1.0 6 2 Op 5 10/0.000 - CDS 8929 - 9528 458 ## COG5662 Predicted transmembrane transcriptional regulator (anti-sigma factor) 7 2 Op 6 . - CDS 9610 - 10188 349 ## COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog - Term 10236 - 10287 8.0 8 3 Tu 1 . - CDS 10317 - 13103 2129 ## COG2352 Phosphoenolpyruvate carboxylase - Prom 13241 - 13300 6.1 - TRNA 13315 - 13388 84.2 # Gly TCC 0 0 Predicted protein(s) >gi|333605193|gb|AFDH01000094.1| GENE 1 901 - 1146 102 81 aa, chain + ## HITS:1 COG:no KEGG:VSAL_I0960 NR:ns ## KEGG: VSAL_I0960 # Name: ahdIC # Def: DNA methyltransferase # Organism: A.salmonicida_LFI1238 # Pathway: not_defined # 1 67 1 67 70 63 44.0 2e-09 MSNINASVGRKIRSLRKAKNYTQDELGDLIDLEQSYLGRIERGEINITLGTLSRISDALQ INPSQLLETNSDYSDKVKTIQ >gi|333605193|gb|AFDH01000094.1| GENE 2 1708 - 3537 1950 609 aa, chain - ## HITS:1 COG:CAC0158 KEGG:ns NR:ns ## COG: CAC0158 COG0449 # Protein_GI_number: 15893453 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains # Organism: Clostridium acetobutylicum # 1 609 1 608 608 729 60.0 0 MCGIVGYIGKRDSQEVLIEGLKKLEYRGYDSAGVAVYTEGGLQIKKSKGRLAVLESQLSD APLNGTVGIGHTRWATHGKPSDENSHPHTDNSMKFSVVHNGIIENYMTLKDELIAKGHTF VSETDTEVISHLIADLYEGDIVKAVQQAVKQMRGAFALGVLTEYEPDRLVAVRLASPLII GVGEGENFIGSDIPAILEYTRNVYILNDGEMALLTRDGVELMTIEGNFISREMFRVDWDL VTAEKAGFDHFMMKEIYDQPKAYRDTIGSRISEAGDRVILDEISMTADQIRNIRNIQIVA CGTAYHAGLVGKSVIEKLARIPVETDVASEYRYRSPIITPETLVIVVSQSGETADTLAAL REAKRNGARVLAITNVVGSSVSREADDVIVTWAGPEIAVASTKAYTTQLMAFYLLGLFLA QTLETVEPAEIRHTLAAMQSLPEQVESILARGEEIQAYAEQNAPKEHLFFIGRGIDYAVA LEGSLKLKEISYIHSEAYPAGELKHGTLALIEDDVPVIALGLQSDLQEKTVSNVKEVTAR GGKVLGIAYEGDAEFAKSVDQMFSIPRTLDVLSPALTVIPLQLLSYYASLARGNDVDKPR NLAKSVTVE >gi|333605193|gb|AFDH01000094.1| GENE 3 5131 - 6471 1364 446 aa, chain - ## HITS:1 COG:BS_ybbT KEGG:ns NR:ns ## COG: BS_ybbT COG1109 # Protein_GI_number: 16077245 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Bacillus subtilis # 1 446 1 446 448 547 62.0 1e-155 MGKYFGTDGVRGVANKELTPELAFEIGRCGGYVLTRQAQHPKVVIGQDTRISGPMLEAAL VAGLLSIGANVIRLGVVSTPAVAYLTRVLGADAGVMISASHNPVEDNGIKFFGGDGFKLL DETELEIERLLDADDDELPRPVGGEIGSVSDDPKAKFLYADFVKSTVQHSFGGMKIVMDC ANGAAYELAPKIFRELGAEVITLGAEPNGRNINDGCGSTHPENLQKAVMEHGANLGLAFD GDADRLIAIDENGDEVDGDFILSICGDAMNRAGKLNHSTIVTTVMANIGFFKGIEGHGLK ATQTAVGDRYVMEEMRKGGYNLGGEQSGHVIFLDYNTTGDGILTGLQLADTLVAGGRPLS EVKRIMRKFPQVLVNVRVADKSKLQDNAAIAGAISAVESQLGDNGRVLVRPSGTESLIRV MAEGPDKDTVEGYVNDIVEVVKRELG >gi|333605193|gb|AFDH01000094.1| GENE 4 6599 - 7927 1253 442 aa, chain - ## HITS:1 COG:BH0266 KEGG:ns NR:ns ## COG: BH0266 COG4856 # Protein_GI_number: 15612829 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 1 391 1 397 418 186 30.0 1e-46 MDRWLRNTNVVRVIAVIIGILLWAVVRMEGTTVTNSTTGGIKELPISNVQITPKYDSDKY YISSIEPSRVQVILKGKDSALKRVSTSEYKVVLDLTKAGGKGEYVLPLEAVGFPSSLQVD IVPRNVKVVVEEQEMKEVPVKINVKGTPQPGYKSGDPIAKPSKVHVSVPASKADEVATVQ GEISVDKADSAVTKQVKLKVYNKEGRELPYDIRPAVVDVDVPVTSPFKTVPLQIQLTGSL PPGYSIGSIKQNPDKIMVYGPQNVLDGMDFYSGVTLKIDGLKETKEFTLDIPLQKGVTQI EPTKVQVTVEIVSSIKKEYPGIPLKIVGQAEGTEVKFTDPPNGSITLTLEGAAPQMEAVK PEDIQAIVDVSNLPPGTHELPITLNLPPYIKDGGTQVTKAKVVISAAQTQTESKNPSPTP IPTPTPTQKPDDVGETVPKKEP >gi|333605193|gb|AFDH01000094.1| GENE 5 7920 - 8735 714 271 aa, chain - ## HITS:1 COG:BH0265 KEGG:ns NR:ns ## COG: BH0265 COG1624 # Protein_GI_number: 15612828 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus halodurans # 9 271 13 274 274 313 59.0 3e-85 MELFADISITDIIDISIVSYVVYKLIMLLRGTRAVQLMKGIIVVLVAWALSVAFNLNTLQ WIMNQMFTVGLIAIIIIFQPELRRALEQLGRGRLFSRSSMDVDQDVNIRIGEVIKAMNYL SRRKIGALIVFEKETGLTDYIESGIAIGGRISSELLINIFIPNTPLHDGAVIIRNNQLMA AGCYLPLSENPFISKELGTRHRAAIGMSEVSDAVCLIVSEETGQISLSLNGQVVRDIKEE SLISKLFDELKPKAKDRQNPFKKWWEGRKRG >gi|333605193|gb|AFDH01000094.1| GENE 6 8929 - 9528 458 199 aa, chain - ## HITS:1 COG:BS_ybbM KEGG:ns NR:ns ## COG: BS_ybbM COG5662 # Protein_GI_number: 16077242 # Func_class: K Transcription # Function: Predicted transmembrane transcriptional regulator (anti-sigma factor) # Organism: Bacillus subtilis # 1 194 1 191 208 140 34.0 1e-33 MNCKQALPLMHEYLDGDLQGAQALELKQHLLSCPECNSLFRQMETTDALVRSIPAPTVSS DLTNRIMGSLPPVKKRKPWTQWIRRHPAVSVAAVFLLTMAGSFMTLWNNNTELMVRGADL ERVIIQGDKVIVPRGETVKGNLVVENGQLVVEDDANVEGNLVVIDGNMNLASTAHISGDK IRIDEALSWIWFKLNDLMH >gi|333605193|gb|AFDH01000094.1| GENE 7 9610 - 10188 349 192 aa, chain - ## HITS:1 COG:BS_sigW KEGG:ns NR:ns ## COG: BS_sigW COG1595 # Protein_GI_number: 16077241 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog # Organism: Bacillus subtilis # 1 184 1 184 187 192 50.0 3e-49 MNLVETRLAKLARNGDRGAFEELVNLYKDKIFHLAYRMLGNKQEAEDAVQDTFLRVYNNL DRYDENQKFSTWIFRIGTNLCIDRLRKRKPTYSLDAEMPDSEGNDFYAMLASKDELPEDQ IVLSETQQVIRRAIQTLPEKYKSVVILRYLHDMSLQEIGDVLGMPVTTVKTRVHRGREYL RKKLDTDANFSL >gi|333605193|gb|AFDH01000094.1| GENE 8 10317 - 13103 2129 928 aa, chain - ## HITS:1 COG:RSc2358 KEGG:ns NR:ns ## COG: RSc2358 COG2352 # Protein_GI_number: 17547077 # Func_class: C Energy production and conversion # Function: Phosphoenolpyruvate carboxylase # Organism: Ralstonia solanacearum # 17 928 58 985 985 592 37.0 1e-168 MSDNETIVQKNSTNNLLRRDVRFLGHILGEVLVHQGGNELLAVVEKIRELSKSLRAQYDP AIYAEFKATIDGLQPEIRHQVIRAFAIYFQLVNIAEQTHRIRRKRDYERSSGETVQPGSI ESIVQQLKQNQISYREVQEILQTISLELVMTAHPTEATRRAVLDIHQRISQDVMYLDNPT LTYREREQLREKLLAEVMTLWQTDELRNRKPTVIDEVQNGLYYFDETLFDVLPEVYQELE RCLDKYYPNETWHVPSFLKFGSWIGGDRDGNPSVTSHVTWETLELHRGLALKKYETILVD VMYHLSFSKNLAEISDELQKSIEADHEVFGPHNDFWSNDDEPYRTKLAYMIEKVRNAGNS QVASFQKYTSPDEMIADLYVIERSLRSHFADYAADRYIKKLIRQVELFGFHLATLDIRQH SREHELAMTEILNRIGIVEDYSTLQENEKIELLSKLLDEPRPITSPYMKYSESTQECLDV YRNIYKAQHEFGRYCLNSYLISMTQGASDMLEVMVFAKEVGLYRKEADGTVVSNIQSVPL FETIDDLHAAPEIMDTLFKIPAYRASLNSAAPMHEIMLGYSDSNKDGGVITANWELRVAL RALTDTGNRNGVKLKFFHGRGGSLGRGGMPLNRSILAQPVDTIGGGIKITEQGEVLSSRY SLQGIAYRSLEQATFALIKGAVLARNPQKHPLETEWESIMKGISEKAQNKYQDLIFRDPD FMTFFKQSTPLPEVGELNIGSRPSKRNNSDRFEDLRAIPWVFAWTQSRYLLPAWYAAGTA LQDFYQDKAENMSVLKNMYENWPFFKSMIDGLQMALAKADLLIAKEYGSLLKEGSIAKRI YELISAEYDLTSKLILDITGQQEILDNVPVIQESIRLRNPYVDPLSYLQVDLLKELRGAR ENNEDDSFLLREVLLTINGIAAGLRNTG Prediction of potential genes in microbial genomes Time: Sun Jul 17 09:49:25 2011 Seq name: gi|333605175|gb|AFDH01000095.1| Paenibacillus sp. HGF7 contig00063, whole genome shotgun sequence Length of sequence - 18372 bp Number of predicted genes - 17, with homology - 16 Number of transcription units - 11, operones - 4 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 22 - 747 864 ## COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases - Prom 801 - 860 4.5 - Term 879 - 942 7.1 2 2 Tu 1 . - CDS 961 - 1488 512 ## GC56T3_1710 hemerythrin HHE cation binding domain protein - Prom 1584 - 1643 4.2 + Prom 1568 - 1627 2.9 3 3 Tu 1 . + CDS 1653 - 4262 2754 ## COG1012 NAD-dependent aldehyde dehydrogenases + Term 4402 - 4439 7.3 4 4 Op 1 11/0.000 + CDS 4451 - 6721 2708 ## COG1882 Pyruvate-formate lyase 5 4 Op 2 . + CDS 6761 - 7519 696 ## COG1180 Pyruvate-formate lyase-activating enzyme + Term 7561 - 7596 4.1 + Prom 7642 - 7701 3.5 6 5 Tu 1 . + CDS 7847 - 8791 958 ## COG0726 Predicted xylanase/chitin deacetylase + Term 8842 - 8891 9.2 + Prom 8886 - 8945 4.3 7 6 Op 1 . + CDS 8967 - 10376 1504 ## BBR47_04100 hypothetical protein 8 6 Op 2 40/0.000 + CDS 10397 - 11113 781 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 9 6 Op 3 . + CDS 11094 - 12500 1551 ## COG0642 Signal transduction histidine kinase + Term 12739 - 12774 6.5 + Prom 12793 - 12852 2.5 10 7 Tu 1 . + CDS 12880 - 13956 1073 ## COG1162 Predicted GTPases 11 8 Tu 1 . + CDS 14089 - 14409 318 ## PPE_03193 hypothetical protein + Term 14425 - 14468 5.1 + Prom 14467 - 14526 8.7 12 9 Op 1 1/0.000 + CDS 14584 - 14931 398 ## COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases + Term 14961 - 14997 -0.8 + Prom 14947 - 15006 4.5 13 9 Op 2 9/0.000 + CDS 15054 - 15227 272 ## PROTEIN SUPPORTED gi|169188753|ref|ZP_02848797.1| ribosomal protein S21 14 9 Op 3 2/0.000 + CDS 15244 - 15684 362 ## PROTEIN SUPPORTED gi|42519249|ref|NP_965179.1| 30S ribosomal protein S21 + Term 15695 - 15734 8.2 + Prom 15815 - 15874 2.5 15 10 Op 1 3/0.000 + CDS 15895 - 16665 729 ## COG1030 Membrane-bound serine protease (ClpP class) 16 10 Op 2 . + CDS 16718 - 17701 1122 ## COG4864 Uncharacterized protein conserved in bacteria + Term 17714 - 17747 1.9 17 11 Tu 1 . + CDS 17848 - 18370 199 ## Predicted protein(s) >gi|333605175|gb|AFDH01000095.1| GENE 1 22 - 747 864 241 aa, chain - ## HITS:1 COG:BS_fnr KEGG:ns NR:ns ## COG: BS_fnr COG0664 # Protein_GI_number: 16080784 # Func_class: T Signal transduction mechanisms # Function: cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases # Organism: Bacillus subtilis # 13 241 8 237 238 166 39.0 5e-41 MNTGTNPVYYTNPRNTAAFKTENLQKLTDIMHEQKLQPGAYLFWEGDTADKLYFIKNGRV RATKSTDEGKDLVLYLYQQGDLIGMIDPYDDTKHWYSAEVLEETLIGVAHKKDVEMLIWQ SGEFALEFMRWMGLSHRMTQTKYRDMMLYGKPGALCSTIIRLSNTYGRHEEDGTIRITKK LTHSELSDMIGSTRESVNRMFSDLRKAQAIEMDNGYIIIRDLNYLKGICHCENCPVEVCR M >gi|333605175|gb|AFDH01000095.1| GENE 2 961 - 1488 512 175 aa, chain - ## HITS:1 COG:no KEGG:GC56T3_1710 NR:ns ## KEGG: GC56T3_1710 # Name: not_defined # Def: hemerythrin HHE cation binding domain protein # Organism: Geobacillus_C56-T3 # Pathway: not_defined # 17 172 12 167 176 75 30.0 8e-13 MSTITVERLPYAAMDPGSQLSDALYYLKQQHEFLEADLLELQMLARGIGATGSRDSLKTD LHQLKVRAERFLKFFQQYQQDEQETLFPIVDLYTGDKMGPTAVMKQEYNMAVHNLRLFFQ ALKEDSQTLDPLCAKRSVSHVLQSCFILLEHMRKEKEWVFPLAEQMLTDIEQFYS >gi|333605175|gb|AFDH01000095.1| GENE 3 1653 - 4262 2754 869 aa, chain + ## HITS:1 COG:lin1675_1 KEGG:ns NR:ns ## COG: lin1675_1 COG1012 # Protein_GI_number: 16800743 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Listeria innocua # 1 455 1 454 455 564 62.0 1e-160 MAVQENETVKPAAAAAKEQVDRLVQNAKKAQAAFEGLDQSQVDRIVQEMALAGVDRHMVL AKLAVEETGRGVYEDKIIKNLFATEYIHNSVKYDKTVGVIDDDPTTGLTSIAEPVGIIAG VTPVTNPTSTTMFKALIAMKTRNPIIFAFHPSAQKCSSEAARVLYEAAVSHGAPKDCIQW VEKPSMEATHELMHHEGVALILATGGSGMVKSAYSAGKPALGVGPGNVPCFIERTADLRQ AVTDLILSKTFDNGMICASEQAVILDEAIAAEAKAMLKAQGCHFLSAKETKKLSQFGMNA GCAVNAAIVGQPAVRIAEMAGFEVPAGTKILIAELDGVGPAYPLSAEKLSPVLACYTAAT AQAGIARAAEIAAFGGLGHTSVIHSNDDGVIAAFAKELPTCRIIVNAPSTHGAIGDIYNA NIPSLTLGCGSYGRNSTSSNVTAVNLINVKKVAHRTVNMQWFKVPEKIYFERNATQYLAK MPDITRVLIVTDPMMVKLGYVERVEHYLRQRRMPVAIEVFSDVEPDPSVDTVERGTAMMN AFQPDCIVALGGGSPMDAAKAMWLFYEYPDVTFHSLKQKFMDIRKRTFKYPKLGKKAKFV AIPTTSGTGSEVTSFAVITDKQNGHTKYPLADYELTPDVAIVDPEFVYSLPKTAVADTGM DVLTHAIEAYVSVMANDYTDGLCLQAIKLVFRNLEQSHATADKLAREKMHNASTIAGMAF ANAFLGINHSLAHKWGGQYGTAHGRTNAILMPYVIQYNAAKPSKYASFPKYSHYCADERY AEIARFLGLPAATTEEGVKSLIDAIRELNQKLGIPASFKELGFDADDFESRVEYLADKAF EDQCTTANPKMPLVSELAEVYRDAFYGRI >gi|333605175|gb|AFDH01000095.1| GENE 4 4451 - 6721 2708 756 aa, chain + ## HITS:1 COG:lin1443 KEGG:ns NR:ns ## COG: lin1443 COG1882 # Protein_GI_number: 16800511 # Func_class: C Energy production and conversion # Function: Pyruvate-formate lyase # Organism: Listeria innocua # 21 756 8 743 743 1134 73.0 0 MAIEEREMRMKSAEEGVYRGFRKGKWQHGIDVRDFIELNLTPYEGDEAFLAPPTEDTKAL WEVVKDLTRREREQGGVLDVDVNTVSTIVSHAPGYLDKDKERVVGLQTDEPFKRSVQPFG GIRMMEDACEAYGFKLPQDMVRLFTDIRKTHNQGVFDAYTSDMRAARKAGIITGLPDAYG RGRIIGDYRRVALYGIDALVADKKKDLLLLEVDAITEDVIRAREELSEQIRALAELKKMA ADHGFDITGPASDAREAFQWLYFAYLAAIKEQNGAAMSLGRVSSFLDIYIERDLREGTLT ETQAQELVDHFVMKLRIVKFLRTPDYNELFSGDPTWVTESIGGMSLSGRTRVTKNSMRFL HTLYNLGPAPEPNLTVLWSEQLPEGFKKYCAKVSIETSSIQYENDDLMRPFYGDDYGIAC CVSAMRIGKQMQFFGARANLAKALLYAINGGVDEKLGVQIGPESVPITADVLDYDEVMHK FKGVMEWLAKLYMNTLNVIHYMHDKYCYERIEMALHDREIVRTMACGIAGLSVVADSLSA IKYAKVRPVRNEKGIAVDFEIEGDYPMYGNNDDRVDSIAVSLVEAFMGMIRKHKPYRDAV PTQSVLTITSNVVYGKKTGSTPDGRKAGEPFAPGANPMHGRDRKGALASLGSVAKLPYEH SLDGISNTFSIVPKALGKEPQTRKDNLVHMLDGYFESGAHHLNVNVFDRQQLLDAMEHPE QYPQLTIRVSGYAVNFIKLTREQQLDVINRTFHGAM >gi|333605175|gb|AFDH01000095.1| GENE 5 6761 - 7519 696 252 aa, chain + ## HITS:1 COG:SA0219 KEGG:ns NR:ns ## COG: SA0219 COG1180 # Protein_GI_number: 15925930 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Pyruvate-formate lyase-activating enzyme # Organism: Staphylococcus aureus N315 # 1 236 2 241 251 244 53.0 1e-64 MKGRIHSIETFGTVDGPGIRFVLFMQGCALQCGYCHNPDTWDTCGGRTVTVDEILAEMEP YLPYYRKSGGGITVTGGEPTLQAAFVAELFKACKERFGVNTALDSSGFCEVGHEHVRELF EETDLVLLDLKMMDRDKHIALTSQPNDKILRTARWLSDHGRPMWIRRVLVPGMTDTEDEL ERLGSFLASLTTVEKFELLPYHKLGTYKWDLLHREYPLKDARTPTEEEVARAYEFIERAR NQNVSRSTCQSL >gi|333605175|gb|AFDH01000095.1| GENE 6 7847 - 8791 958 314 aa, chain + ## HITS:1 COG:SP1479 KEGG:ns NR:ns ## COG: SP1479 COG0726 # Protein_GI_number: 15901329 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted xylanase/chitin deacetylase # Organism: Streptococcus pneumoniae TIGR4 # 122 314 268 451 463 174 44.0 2e-43 MKKRKVFRLRYVLMIALGLFIAYNVSHALLTKEAASGSTQGETAATPSPSPVPTANEPEK KPDKSAHPDPTPTPEPTRKPDPTPDPTATPDPAPTPKSTQAPQGGGAANLATPIYSVSTK NKLVALTFDDGPDLHWTPQVLEVLSKYNAKATFFLVGRQVDKYPDMVKRIVDEGHAVGNH TWSHAQLPKLTPEQAREQMTSTDEALKKALGKGTYLFRAPYGAVNDNVKAVAAQQGQLII GWSIDTKDWAGNTPDQIMNNVKQHIHPGSIILQHSFGGKGGDLSNTVEATRRICEYLQAQ GYQFVTVPELLAAK >gi|333605175|gb|AFDH01000095.1| GENE 7 8967 - 10376 1504 469 aa, chain + ## HITS:1 COG:no KEGG:BBR47_04100 NR:ns ## KEGG: BBR47_04100 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 13 467 4 450 454 311 38.0 6e-83 MKRRIKWIPRPAAGLLTAGLSMLLLSGCQLISSSPAALLKAPAMSSSLYQLKEAVTHYLP PGAVLNTPLKLPDNSAAGPIYQVDLNGDNQKEAVAFYRLQKNEFELGALILEQVDEEWRK VTDIHELGREIDRVDFVDVTGDGAPEMLVGWSAGEAVNLNKELFVYSMKGSVVSQMEKIP YTEIAIGDLTGDGVPEVAALLLDRDKLDASASLYSFKNGEKKLMQKLPMDGGVNGYYQVV IGKATDSQNGIFVDTGLGANTSYTSLLVWNNGKLKDVFSAKDEQGNVQTFKEYKGRSQDV NGDGIMEIELLKIPPFIENSNPTDMPWIHQWYQWDGANGLKWVHENYYDNNVTYRFDFPE SWRGKITLERSKSDRADGYTTFYYLSANRKEKAELLTIRYYPTEQWENMKNELQKKEIDF VELDTSYGRKTVAFLPEKPTNLSVKSLQEYNQMKLGLKDIQERLKPVYY >gi|333605175|gb|AFDH01000095.1| GENE 8 10397 - 11113 781 238 aa, chain + ## HITS:1 COG:all4503 KEGG:ns NR:ns ## COG: all4503 COG0745 # Protein_GI_number: 17231995 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Nostoc sp. PCC 7120 # 2 225 23 250 253 174 42.0 9e-44 MRVLILEDEESIRGFIRINLKRNDIDVTEAATGEEALQLVKDEGPFHIAILDVMLPTQLS GFDVCAQLRKMYPKMGIIMLTAKSQDTDKAEGLEIGADDYVTKPFSPVELIARIKALYRR LEIPEQESAKQSLSSGIFTLQLKERKLFKGRTEIDITPTEFAILKLFMEQPDQGISRDEI LDAVWGKHFVGDLKIVDVNIRRIRQKIEVDPSHPAHIETVWGYGYLWKKESALEQHKE >gi|333605175|gb|AFDH01000095.1| GENE 9 11094 - 12500 1551 468 aa, chain + ## HITS:1 COG:BH1945 KEGG:ns NR:ns ## COG: BH1945 COG0642 # Protein_GI_number: 15614508 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Bacillus halodurans # 98 458 98 459 462 192 31.0 2e-48 MSSIRSKVVWNFLLIIVFIVLLLGGLFLGTIYQYYYGSALQALSERAKFTVDYNNRYNSL SPLQERARNILKELAKDEISRVEVVDLEGNLIRDSYGFTSKRKIDTSDVQSALLGEPGKW IGLNTDTKERIMALSYPLKNGDRVVGVLRYTTSIEQVDRMVMRTAWIIIGIGVAVILVSL AVSLLLANRIVRPIREVTDVAQSMAQGDFHNKAVKRHDDEVGHLADTLNYMADEILRNDR LKNEFISSISHELRTPLTSIKGWSETLVSGDLNEKEETLTGLSVISKETDRLIGLVEDLL DFSKLQSGNMKMHREPVDVNRLVKDIYQQFAGNCQRRRMELQISLAENSLYVFGDQNRLK QVLINLLDNAMKFTQENGVIRIMTRVEGSLVHLIVEDEGEGISPEAVKYVTEKFYKADNR QPGSGLGLSICQEIAQLHGGTLQVTSELGQGTTVTVELPRMPEEEKVL >gi|333605175|gb|AFDH01000095.1| GENE 10 12880 - 13956 1073 358 aa, chain + ## HITS:1 COG:alr8077 KEGG:ns NR:ns ## COG: alr8077 COG1162 # Protein_GI_number: 17227451 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Nostoc sp. PCC 7120 # 1 352 1 348 353 391 52.0 1e-108 MNLTELGWNEELRQALTDMSAEGLTAGRVALEHKRMYRVKTGSGEVLAEVSGSMRYQARS RGDYPAVGDWVALSVREEEGRATIHGVLPRKSMFVRKVAGNVTEEQIVAANVDVIFLVNA LNADYNLRRLERYLVMAWESGASPVIILSKADLCASPEEVALRVAETEAIAPGVPVHAVS SVLGEGVEGLRAAYLGVGRTAAVAGSSGAGKSTLINALLGREAMDTGAIREDDARGRHTT THRELLLLPGGGVLIDTPGMRELQLWEADSGLSQSFDDVETLAASCRFPDCRHNSEPGCA VRGAIEDGTLDQARYDSYVKLQKELAFLARKESKSLQTAEKDKWKKIHKEMRRKPPKP >gi|333605175|gb|AFDH01000095.1| GENE 11 14089 - 14409 318 106 aa, chain + ## HITS:1 COG:no KEGG:PPE_03193 NR:ns ## KEGG: PPE_03193 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 2 106 14 132 132 81 42.0 1e-14 MQKHEAKSLCQQHKYRYVLIQLNDGTVHDGIIENVDDDYVYLAIPVGGRAGGESETRAFG WGYPYYGYPYYGYFPYGGYPYYPRRRFYRGIFPLVALTVLSLLPYY >gi|333605175|gb|AFDH01000095.1| GENE 12 14584 - 14931 398 115 aa, chain + ## HITS:1 COG:CAC1287 KEGG:ns NR:ns ## COG: CAC1287 COG0537 # Protein_GI_number: 15894569 # Func_class: F Nucleotide transport and metabolism; G Carbohydrate transport and metabolism; R General function prediction only # Function: Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases # Organism: Clostridium acetobutylicum # 2 104 3 105 114 132 55.0 1e-31 MDCLFCKIRDGQIPSKQVYEDEQVLAFHDIQPAAPVHILIIPKKHIASMKDAGEEDWALI GSVHKAAQQIARDFGIEESGYRLINNCGPDSGQVVFHIHYHLLGGTNLGPLVAQR >gi|333605175|gb|AFDH01000095.1| GENE 13 15054 - 15227 272 57 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169188753|ref|ZP_02848797.1| ribosomal protein S21 [Paenibacillus sp. JDR-2] # 1 57 1 57 57 109 94 2e-23 MSETRVRKNETIDAALRRFKRSIAKDGVLAEIKKRKHYEKPSVKRKKKSEAARKRKF >gi|333605175|gb|AFDH01000095.1| GENE 14 15244 - 15684 362 146 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|42519249|ref|NP_965179.1| 30S ribosomal protein S21 [Lactobacillus johnsonii NCC 533] # 1 146 1 146 147 144 49 6e-34 MSLSERLNDDMKQAMKSQDKFTLSVIRMVKASIKNIEIDQRRTLDDNEVLDVLNREVKQR KDSLQEFKNAGRDDLADSLHAEIDILMKYLPQQLTEEEVSAIVKQTIQEVGASSKADMGK VMSALMPKVKGRADGKLVNQLVQQNL >gi|333605175|gb|AFDH01000095.1| GENE 15 15895 - 16665 729 256 aa, chain + ## HITS:1 COG:BH1356 KEGG:ns NR:ns ## COG: BH1356 COG1030 # Protein_GI_number: 15613919 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Membrane-bound serine protease (ClpP class) # Organism: Bacillus halodurans # 37 251 230 444 445 159 41.0 6e-39 MISLRRTFLGCAAVLGSIGCLPGLAAASAGTAAQQGFTSALGDFLTHPAVAAILLLIGIV GIGLELLFWTFGLLGSVGVIGFGLYFLGNYLAGGAGSGDIGLFVLGVLLLLLELIIPSFG ILGIAGSISLFSGVILAADNPQTAALLLVIAFVAAAVLLFIAVKKFPARGVWNRFILKEE LTTEKGFVSSSFKLHLMGQTGTSLTPLRPSGTAQFGEDRVDVVTEGGFIPAGRLVKVVLV EGSRVVVHEEEAGAEK >gi|333605175|gb|AFDH01000095.1| GENE 16 16718 - 17701 1122 327 aa, chain + ## HITS:1 COG:BS_yqfA KEGG:ns NR:ns ## COG: BS_yqfA COG4864 # Protein_GI_number: 16079592 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 7 321 9 323 331 450 80.0 1e-126 MESYFYLLIAAVVLILLMVFFTFVPVMLWISALASGVRISILTLVAMRLRRVIPSRIVNP LIKAIKAGLGLNINQLESHYLAGGNVDRVVNALIAAHRADIQLPFERAAAIDLAGRDVLQ AVQMSVNPRVIETPTVSAVAKDGIEVKVIARVTVRANIDRLVGGAGEETIIARVGEGIVT TVGSSGSHKDVLENPDMISRTVLGKGLDAGTAFEILSIDIADVDVGKNIGAHLQTEQAEA DKRIAQAKAEERRAMAVAQEQEMKARVVEMRAKVVEAESEVPQAMADAMRNGKLGVMDYM NYKNIDADTHMRSSIGKMSEEGKEGKE >gi|333605175|gb|AFDH01000095.1| GENE 17 17848 - 18370 199 174 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MERLIELIANNFFFVIMIGIFLVSMLSGKRKKTGNPNRMPDFSGQGLPRRPAASTRPASG AGREPDRRGDWSAEDAADDWTAAEPAAAGRGRSGGFASSDARGSFAKPAETPRKREARAV REEAAGSGNSTAGVDLHPRQAVQGVIWAEILGPPRAKKAVPPVIPDGTAFLCPS Prediction of potential genes in microbial genomes Time: Sun Jul 17 09:49:54 2011 Seq name: gi|333605156|gb|AFDH01000096.1| Paenibacillus sp. HGF7 contig00049, whole genome shotgun sequence Length of sequence - 18319 bp Number of predicted genes - 17, with homology - 15 Number of transcription units - 5, operones - 4 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 2 - 1120 1127 ## COG1232 Protoporphyrinogen oxidase 2 1 Op 2 . + CDS 1208 - 1471 120 ## 3 1 Op 3 . + CDS 1542 - 2843 1478 ## COG0001 Glutamate-1-semialdehyde aminotransferase + Term 2888 - 2929 9.5 + Prom 3044 - 3103 3.4 4 2 Op 1 . + CDS 3136 - 3279 188 ## 5 2 Op 2 . + CDS 3248 - 4111 277 ## PROTEIN SUPPORTED gi|238855152|ref|ZP_04645474.1| pseudouridine synthase, RluA family 6 3 Tu 1 . + CDS 4223 - 5719 1464 ## PPE_03674 hypothetical protein + Term 5790 - 5826 5.6 + Prom 6466 - 6525 8.2 7 4 Op 1 2/0.000 + CDS 6688 - 7455 413 ## COG4464 Capsular polysaccharide biosynthesis protein + Prom 7458 - 7517 4.5 8 4 Op 2 5/0.000 + CDS 7603 - 8358 907 ## COG3944 Capsular polysaccharide biosynthesis protein 9 4 Op 3 1/0.000 + CDS 8342 - 9025 747 ## COG0489 ATPases involved in chromosome partitioning 10 4 Op 4 . + CDS 9110 - 10945 1942 ## COG1086 Predicted nucleoside-diphosphate sugar epimerases 11 4 Op 5 . + CDS 10976 - 12328 1613 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid 12 4 Op 6 . + CDS 12330 - 13553 1128 ## Pjdr2_0355 polysaccharide pyruvyl transferase 13 4 Op 7 . + CDS 13543 - 14676 1069 ## COG0438 Glycosyltransferase + Term 14691 - 14731 2.2 14 5 Op 1 . + CDS 14747 - 15988 1152 ## Pjdr2_0357 hypothetical protein 15 5 Op 2 8/0.000 + CDS 15900 - 16502 394 ## COG0110 Acetyltransferase (isoleucine patch superfamily) 16 5 Op 3 8/0.000 + CDS 16480 - 17667 1239 ## COG0438 Glycosyltransferase 17 5 Op 4 . + CDS 17672 - 18317 613 ## COG0451 Nucleoside-diphosphate-sugar epimerases Predicted protein(s) >gi|333605156|gb|AFDH01000096.1| GENE 1 2 - 1120 1127 372 aa, chain + ## HITS:1 COG:BH1204 KEGG:ns NR:ns ## COG: BH1204 COG1232 # Protein_GI_number: 15613767 # Func_class: H Coenzyme transport and metabolism # Function: Protoporphyrinogen oxidase # Organism: Bacillus halodurans # 3 342 124 458 467 315 46.0 9e-86 TGLVSAKGKARAMMDLVLPKKEDDSDESLGHFLHRRLGKEVLDQIVEPLLAGIYAGDTYA LSLQSTFPQFGEMEQQYRSLIYGMISNRKKSQQEALNLPAPGRNSTFLTYKNGLQTLVER LEEVLREEGVTIRTGTKVTELRKEGDRYEVGYEGGQGETANSVILTLPTYHSAELLGDHP AVDKLKAINYVSVANVVIAYREEDANVKFDGSGFLIPRSEGRSITACTWTSTKWLHTAPE GHVLLRCYVGRSGEEDWVHLTDEEIVAKVRKDVAELMGITAEPLFYEVTRLYRSMPQYPV GHLDHVRELRSNLAERMPGVYVTGAGFHGVGLPDCIRQGREAAFEAADRLTGAADGSAAK ASAEGTKTAAKV >gi|333605156|gb|AFDH01000096.1| GENE 2 1208 - 1471 120 87 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTLMDEVDVRQLVALRTKTKPFADKKQMLTNLKANVRGAAAAKAVCLLKQSHAEACIIET TDKQKPGRLCSFEAFRLLSRREAADRV >gi|333605156|gb|AFDH01000096.1| GENE 3 1542 - 2843 1478 433 aa, chain + ## HITS:1 COG:BH3043 KEGG:ns NR:ns ## COG: BH3043 COG0001 # Protein_GI_number: 15615605 # Func_class: H Coenzyme transport and metabolism # Function: Glutamate-1-semialdehyde aminotransferase # Organism: Bacillus halodurans # 11 433 6 427 429 600 70.0 1e-171 MELNHKRNDTKSAAAFAEAKQVIPGGVNSPVRAFKSVGLTPMYMERASGSRVYDIDGNEY IDYIGSWGPLILGHAHPEVIEAVKSTAEKGTSFGAPTLIETEMAKLVAERVPSIDIVRMV NSGTEATMSALRLARGFTKRNKILKFEGSYHGHADALLIKAGSGVATLGLPDSPGVPESV AQNTLTVPYNDLETVKVVFEKFGEDIAAVIVEPIAGNMGVVPPLPGFLEGLREVTSKFGA LLIFDEVMTGFRVHLNCAQGLYGVTPDLTCLGKVIGGGLPVGAYGGRKDIMEQIAPSGPI YQAGTLSGNPLAMAAGYTTLKLLGQPGVYEELERKSARLAEGFLANAKEIGVPSTLNRVG SMVCPFFTEQKVVNYDTAKTSDLSVFNRYFGHLLDLGVSVAPSQFEGMFVSTAHTDEDIE ATIEANREALKRL >gi|333605156|gb|AFDH01000096.1| GENE 4 3136 - 3279 188 47 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKRYYFFDFPIDLIFIVFVFVVLLAALAVVLRKGGRYRDGQKKRGMD >gi|333605156|gb|AFDH01000096.1| GENE 5 3248 - 4111 277 287 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|238855152|ref|ZP_04645474.1| pseudouridine synthase, RluA family [Lactobacillus jensenii 269-3] # 71 278 82 284 287 111 35 4e-24 MTGRRKGEWIELTLPGDACAWEEVHAVLPVPLKLWRKLEREGGIRRQGKKVLLKVFPDEP SPVPGEWTDLQVLFEDDYLLVVNKPAGMAVHPSEPGQRGTLANAVAGYYESTGQSCGVRH IHRLDQDTSGAVLYAKYELPHLLLDEAMREKAIGRMYAAVCGGLPAPPAGTISAPIGKDR HHRARRRVSPGGDAAVTHYRTVESFRDAALLELRLETGRTHQIRVHMSHIGHPLLGDALY GGRMNAFGRQALHGARLLFRHPVTGEELAVDAPYPDDFRELLAALNA >gi|333605156|gb|AFDH01000096.1| GENE 6 4223 - 5719 1464 498 aa, chain + ## HITS:1 COG:no KEGG:PPE_03674 NR:ns ## KEGG: PPE_03674 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 3 488 7 443 443 181 33.0 5e-44 MTEEQNGLRFDIYERVHLAEGAAGIRDLDDVELIPRIEVIPQQEQALLKGSLLLNGSYLD EQETKRSLEHSIPVEITLPLSRVHRIEDILVDIETFDVDVLNSRSLNVTGVLSLHGVEMA YEAGGWSEEDEEVVFVHETASAPQNTPAEQRSEPVGGADELELRQQTEYAAAADGQAKLQ PPTTSAQPQYQAQPQAPVYPGSAYKADNPWLRETRTEQPEVQAAAPSGPAPSAWDRLAAP KSPPPQADSSASYADRSFGELTMNQLSSERSYRSAGEEEAQEQRTPSAAAGQQPLAQAAA PASASPAEQEAAGQAEREETAPTFGIEAEVIEPDREPVIASAPAEESLEVFADEEPAVQE ETKELKVAFGSKKQQDSPSSGGSGLQSLFANGAGSGASSYERTEKDEREYASAAGSEESK ADALEWKKLFIQTEKEDQQFRKVTMCIVQKEDSLDLIAKRYEINPRELQLYNRLEDQEVS PGQILYIPGKAVFTSSDQ >gi|333605156|gb|AFDH01000096.1| GENE 7 6688 - 7455 413 255 aa, chain + ## HITS:1 COG:BS_ywqE KEGG:ns NR:ns ## COG: BS_ywqE COG4464 # Protein_GI_number: 16080677 # Func_class: G Carbohydrate transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: Capsular polysaccharide biosynthesis protein # Organism: Bacillus subtilis # 1 254 1 254 254 183 39.0 2e-46 MIDIHTHILHGLDDGPSSLEQSLEMARMAVSNGISTVFATPHHRTSRYFTPSADIEEAVA GLNASLLEHGIPLHVKSGQEIRVTPNLINDWYEDTLLTLGGTRYLLIECPAYSLPAELAE ICHECSVLGLVPVIAHPERNAEVAGDPDKLLQLAEWGAVFQLTSDSILGTFGSKVQSLAY ELCSRRLIHLVASDAHDLVRRPFRLSEAYEKIEAKIGGDYAEYCRRNAIRVANDLPLEKR EPVAGRPRRIFAMFR >gi|333605156|gb|AFDH01000096.1| GENE 8 7603 - 8358 907 251 aa, chain + ## HITS:1 COG:BS_ywqC KEGG:ns NR:ns ## COG: BS_ywqC COG3944 # Protein_GI_number: 16080679 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Capsular polysaccharide biosynthesis protein # Organism: Bacillus subtilis # 7 236 7 232 248 152 39.0 5e-37 MSIDFEIKRYLAVLRKRLWLILLIVAAGCLITGVVSKYYLKPVYQASTKLIVNSPADNQG MLRLDMNAINTNISLIHTYKEIIKTPAIMDLVVKEHPEYGVTSDDLMRRIQFSSVSDTQI FTLSLEDASYSKAAQMINTVAQMFQKQIPNIMKIDNVFVLHEADPAKTPAPVKPNVPLNV AISFLASLMFAIGLVFALEYFDDTLKTEEDVEHYLGLPTLVAVPEIRAGDMKPKRTPIGK KVGEASGVPIQ >gi|333605156|gb|AFDH01000096.1| GENE 9 8342 - 9025 747 227 aa, chain + ## HITS:1 COG:BH3668 KEGG:ns NR:ns ## COG: BH3668 COG0489 # Protein_GI_number: 15616230 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Bacillus halodurans # 5 226 12 233 235 217 49.0 1e-56 MSPSNKQRPIIAHSNPMSPISETYRTLRTNIQYSGVDGEIRTLMVTSASPWEGKSTTIDN LAVVYAQTDKKVLLIDADLRKPTAHRTFGLSNRTGLTDVLTRQAEVEEALKETDIPGLYV MTCGTVPPNPSEILGSRRMTDLLERLKQEFDVILVDTPPVLAVSDAQVVATQCDGVVLVV NAGGVKRELVQKARDSLQFVHARILGVVLNKVARKDAKMNTYYDYSS >gi|333605156|gb|AFDH01000096.1| GENE 10 9110 - 10945 1942 611 aa, chain + ## HITS:1 COG:BH3718 KEGG:ns NR:ns ## COG: BH3718 COG1086 # Protein_GI_number: 15616280 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Predicted nucleoside-diphosphate sugar epimerases # Organism: Bacillus halodurans # 1 574 1 566 608 584 52.0 1e-166 MSYSKRTPMLVLIDMIIVWASIYLTFLAHFRGGIPQEVMSVIMLYTLVSGISLACAMFYF QLYNRIWQYASVGEMVAIAKAVIVSCLISYAVTSFLSAGEITLYMFLQNLNGILLMLGGS RFVWRVFCDNFYGSSRSRGGKPAQRTLVVGAGSCGVMFVKELAHNDSFMMKPVAFVDDDP YKQKLQLHGIPVMGNRLDIPRIVEEQRIDDIIIALPSVSKTQISDIINICKTTKARLKII PHIQEYIQGKMAANQMRDVQVEDLLGRDPIQTDLQNIADYVQNKIVLVTGAGGSIGSELC RQVAPFKPARLLLLGHGENSIYGIEMEMRRLFPNLPIETVIADVQDRTRIADVFREFGPQ VVFHAAAHKHVPLMERNPSEAIKNNVFGSKNVAECADEFGAERFVLISTDKAVNPTSIMG TTKRIAEMFIQSLDKHSKTKFVAVRFGNVLGSRGSVIPRFKDQIARGGPVTVTHPEMVRY FMTIPEAVQLVIQAGAFAKGGEVFILDMGKPVKIVDLATDLIRLSGYEPNVDIDIEFSGI RAGEKLYEELLTSEEGMSSTMHDRIFIGKPMNINRTELEFEMRRLERVLGSDPEEIRALL QHLVPTYRNVS >gi|333605156|gb|AFDH01000096.1| GENE 11 10976 - 12328 1613 450 aa, chain + ## HITS:1 COG:mlr6757 KEGG:ns NR:ns ## COG: mlr6757 COG2244 # Protein_GI_number: 13475637 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Mesorhizobium loti # 7 440 85 523 546 152 25.0 1e-36 MSMNTTAKPLTQRSLSKMLMKSSSLSFLVNVGGIGIALILQILLARQLGAVSYGYYSFVT TVVTFLVFPTKLGFDTAIVRYVSSYRAHGQWAEVKGLLRRANQITAGLSLAVTVISLLVV LLMSGTMNGELLYTYIAGLLGIPVMALALLRQSSLQALKEMLHAQLPEKIIRPVVFIALL FLYNGIADTKAGAGEAMLLFLAAMAVSYAIGAWVLKRRLTPKIQGADTAYNTREWVNVSL SLMFVSGMYLVLGQLNVLMLGWMEGTTEAGIYGAAVRIATLVSFGLTAINMTAAPFISES YAKKDDKQLQHVLSLSNLAGFLFAGVIYVAFLFLNDPILGLFGEEFKRGSLALLILSTGQ LVSAFSGQTGTLMTMTGQQKTLGRILAGSAVLNIVLNLALIPAFGMLGAAITNLLCTVCW KTAMVIVIRRKLNISIGMFAWMTANKKRGN >gi|333605156|gb|AFDH01000096.1| GENE 12 12330 - 13553 1128 407 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_0355 NR:ns ## KEGG: Pjdr2_0355 # Name: not_defined # Def: polysaccharide pyruvyl transferase # Organism: Paenibacillus # Pathway: not_defined # 1 404 1 412 413 398 48.0 1e-109 MKHILLAGVPHSTNLGDGLIALTVNQLIRTCGEYTVTNFDLTAGLYRETPARSGSVQRTD GGPALTRDYKLNEVSVKKKLTPDFLRYMKSYSVHKRKDAVLGEQIRELVTQADAVLIGGG HLFIDTYLSFPIAMRRLVREVKRQGKPLHVVFVGMRGPWSFLARKWFTDILHYAKTISVR DEDSLAYLLSIAPSLAHKAVALSDPALVTLEAFPGRHAAGGARSASVHTVGLGIMDPNEM RRHSPYVWERDDCADWWYSLAKGATDGGSRVRVFTNGADTDNAFVERYVKPRLAGMPGVE FAPYPGDVGDLVESIRDCDTVIAQRLHACIPAISFGKPTYGIAWDKKLASIFKDLGLSGH VLDFRTDPKVVLAGLVPEKNRHEGSVRIVNQKKRELVTYVGRILHEA >gi|333605156|gb|AFDH01000096.1| GENE 13 13543 - 14676 1069 377 aa, chain + ## HITS:1 COG:BS_yveP KEGG:ns NR:ns ## COG: BS_yveP COG0438 # Protein_GI_number: 16080485 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Bacillus subtilis # 4 373 5 374 384 250 39.0 2e-66 MKPKTKILHVVGKMHPGGIETLLMNLYRTIDRDKYEFHFAVQFEEKGFYDDEIIELGGRI FRQPHPKKGLRAFRRAFLANLKEHGPYQVVHSHIYQFSGYVLKLAGEMNVPVRISHSHNT HDSKRESWLRSLYRKYMRGLIRSNSTTMLGCSRSACEALFGPDCWRDERVVVFPNSIQVQ PYGQLERDRSAYRRAVGVTDPHVPVIGHIGRFSEQKNHRFLLEIFARFLRIRPDAQLVLI GEGPLRSEMEARVRELGIADQVHLLGVRKNIPELIGAFDLFLLPSLYEGLGIVVIEAQAA GVPCLISDQVPAEADLNLGLVSRLSLNESADSWAGAIREKTAGSRLDWPVRLEALQECGY DIQTSVRRLERMYAAAP >gi|333605156|gb|AFDH01000096.1| GENE 14 14747 - 15988 1152 413 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_0357 NR:ns ## KEGG: Pjdr2_0357 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 1 369 21 393 448 382 53.0 1e-104 MLLLEKGIFLLDERMGIISFFVLLLPLFCMIRWPDQPFLLYIGFCVMLIGKFVYAITATP LAGPDENHYYEQVVTYLGLGDFLHYAFEHISTYLFNSSAYPIFGLMYMPFFKFLDVSDPL VIITYNSVMLIWIAYLIYALNRSFFGYEQANRRMYEGWIILGLFVSPSFMMMTSLFAKDV TCVALGLYCTYLLLKRKYVLFLLVMLYATGLRDYAIVYTLCFYLLFTKRFKTAVAMLVVS AGVLAVKIGGLGIVNAVLLTAFLFLSPNPVNLENWETNVMYRSMEAVAMLVALAFAVLMF IRYKETRAFYGIVVVLLFAYACTLVLVGYMTVTGRDLEYGVGTIGDNMVRKKLPILPLLY MFQAYTASWTLKWLKSIRDKRRGIHERPRPVSQIQNGAGHRHPHSPSLPEAGA >gi|333605156|gb|AFDH01000096.1| GENE 15 15900 - 16502 394 200 aa, chain + ## HITS:1 COG:MA0410 KEGG:ns NR:ns ## COG: MA0410 COG0110 # Protein_GI_number: 20089303 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Methanosarcina acetivorans str.C2A # 77 188 84 191 191 85 37.0 8e-17 MRGRDRFHKFKTVLDIVIRILRLFPRPALKYAWTLTDLLPDTAGVAMRYCLLKCLTLSCG DNVFVGRSVEIKYWERLRIGSNVSIHKQCYLDACGEIQIDDEVSIAHQSSLISFQHSWED ESLPIRDNPVVCSKIHIHRDVWIGCGCRVLAGASIGSRSIVAAGAVVTRPVPSMTVAAGV PAKIIKSIRKEGHYERSVGT >gi|333605156|gb|AFDH01000096.1| GENE 16 16480 - 17667 1239 395 aa, chain + ## HITS:1 COG:VC0925 KEGG:ns NR:ns ## COG: VC0925 COG0438 # Protein_GI_number: 15640941 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Vibrio cholerae # 182 332 162 303 365 86 35.0 9e-17 MNVLWAHDHTFYFTDSGKFYSSGKLPYAVWERYLSVFDSLTVVSRGKRMTSAHEMEKKSL SSGAGVNFIVLPSLSNPVNKITKKGYVERVLTEAVMKADAVIARLPSEIGSEAIAIAKKL GKPFAVEVVACAWDGLWNYGSVQGKLYAPIATWKTKSDVKEAPYAIYVTEQFLQKRYPCP SGRTQSCSNVELPEMGEDVLQRRLERIRSMKTPVTIGLIGSLNGKTKGIDTALNALARIK GQLPPFKFRILGDGDKSRWIAMAGSLGLQENVQFDGILPSGSAVFGWLDSVDIYIQPSFQ EGLPRATIEAMGRGCPVIGSTAGGIPELLDPGCLFKPGQDKQLAALLTGTVINRDWMLEQ ASRNFAKAANFTKTKLDRDRSEFWQSFHQYVSRGV >gi|333605156|gb|AFDH01000096.1| GENE 17 17672 - 18317 613 215 aa, chain + ## HITS:1 COG:BH3709 KEGG:ns NR:ns ## COG: BH3709 COG0451 # Protein_GI_number: 15616271 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Bacillus halodurans # 1 214 1 214 343 301 68.0 5e-82 MSILITGSAGFIGYHLALRLLESGAKVVGYDNLNDYYAVTLKQDRLKQLQNYPNYHHYTA DLCDHEQLNRVFGEHEIRVAVNLAAQAGVRYSLQNPRAYADSNLTGFLNVLEACRTYKID HLIYASSSSVYGANTKMPFSTDDPVDHPVSLYAATKKANELMAHSYSHLYGIPVTGLRFF TVYGPWGRPDMAYFSFTRNILEGKPIQVFNEGKMR Prediction of potential genes in microbial genomes Time: Sun Jul 17 09:50:52 2011 Seq name: gi|333605086|gb|AFDH01000097.1| Paenibacillus sp. HGF7 contig00080, whole genome shotgun sequence Length of sequence - 100224 bp Number of predicted genes - 70, with homology - 62 Number of transcription units - 45, operones - 15 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 4 - 63 3.2 1 1 Tu 1 . + CDS 215 - 691 -47 ## Arth_1002 serine/threonine protein kinase - Term 1426 - 1472 1.4 2 2 Tu 1 . - CDS 1575 - 1988 363 ## COG0789 Predicted transcriptional regulators - Prom 2073 - 2132 4.5 + Prom 1995 - 2054 2.6 3 3 Tu 1 . + CDS 2083 - 2937 572 ## COG0451 Nucleoside-diphosphate-sugar epimerases 4 4 Op 1 20/0.000 - CDS 3886 - 6159 1999 ## COG0643 Chemotaxis protein histidine kinase and related kinases 5 4 Op 2 17/0.000 - CDS 6172 - 6600 551 ## COG0835 Chemotaxis signal transduction protein - Term 6643 - 6679 5.7 6 4 Op 3 . - CDS 6689 - 8293 1941 ## COG0840 Methyl-accepting chemotaxis protein 7 4 Op 4 . - CDS 8290 - 8466 160 ## 8 4 Op 5 . - CDS 8510 - 8974 406 ## Aflv_1362 CheC - Prom 9137 - 9196 3.6 - Term 9244 - 9280 2.3 9 5 Op 1 19/0.000 - CDS 9311 - 9979 755 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 10 5 Op 2 . - CDS 9972 - 13511 3160 ## COG4585 Signal transduction histidine kinase - Prom 13726 - 13785 4.7 + Prom 13683 - 13742 7.6 11 6 Op 1 1/0.125 + CDS 13775 - 14476 698 ## COG0775 Nucleoside phosphorylase 12 6 Op 2 . + CDS 14473 - 15303 866 ## COG2107 Predicted periplasmic solute-binding protein + Term 15486 - 15518 5.0 - Term 15563 - 15621 14.4 13 7 Tu 1 . - CDS 15669 - 16787 1278 ## COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family - Prom 16907 - 16966 5.7 + Prom 17077 - 17136 5.8 14 8 Tu 1 . + CDS 17209 - 17931 855 ## COG2761 Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis + Term 17955 - 17988 5.2 - Term 18142 - 18180 5.2 15 9 Tu 1 . - CDS 18295 - 19137 887 ## COG1586 S-adenosylmethionine decarboxylase - Prom 19178 - 19237 9.4 - Term 19245 - 19276 2.3 16 10 Op 1 . - CDS 19300 - 20337 1093 ## 17 10 Op 2 . - CDS 20433 - 20504 60 ## 18 10 Op 3 . - CDS 20517 - 21095 194 ## PROTEIN SUPPORTED gi|116511598|ref|YP_808814.1| acetyltransferase 19 10 Op 4 . - CDS 21122 - 22039 697 ## COG3449 DNA gyrase inhibitor 20 11 Tu 1 . - CDS 22258 - 23226 1001 ## COG0524 Sugar kinases, ribokinase family - Prom 23391 - 23450 2.0 + Prom 23327 - 23386 2.7 21 12 Tu 1 . + CDS 23426 - 23983 675 ## COG0693 Putative intracellular protease/amidase + Term 24021 - 24062 13.4 - Term 24009 - 24050 13.4 22 13 Op 1 12/0.000 - CDS 24105 - 25625 1912 ## COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) 23 13 Op 2 . - CDS 25622 - 26584 1103 ## COG1125 ABC-type proline/glycine betaine transport systems, ATPase components - Prom 26634 - 26693 3.8 24 14 Tu 1 . - CDS 26915 - 27391 496 ## COG1683 Uncharacterized conserved protein - Prom 27431 - 27490 3.7 - Term 27540 - 27584 8.1 25 15 Tu 1 . - CDS 27589 - 27774 205 ## COG5002 Signal transduction histidine kinase - Prom 27917 - 27976 1.6 26 16 Tu 1 . + CDS 27773 - 27970 282 ## 27 17 Tu 1 . - CDS 28016 - 28969 797 ## COG2378 Predicted transcriptional regulator - Prom 29018 - 29077 5.0 + Prom 29017 - 29076 4.1 28 18 Tu 1 . + CDS 29110 - 30189 790 ## COG4335 DNA alkylation repair enzyme + Term 30243 - 30273 -0.7 - Term 30277 - 30325 13.0 29 19 Op 1 19/0.000 - CDS 30497 - 31096 839 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 30 19 Op 2 1/0.125 - CDS 31093 - 32229 1218 ## COG4585 Signal transduction histidine kinase 31 19 Op 3 . - CDS 32295 - 33350 1169 ## COG3239 Fatty acid desaturase - Prom 33410 - 33469 5.9 - Term 33529 - 33553 -0.3 32 20 Tu 1 . - CDS 33629 - 34186 677 ## COG4474 Uncharacterized protein conserved in bacteria + Prom 34272 - 34331 5.3 33 21 Op 1 12/0.000 + CDS 34438 - 36417 1217 ## COG1328 Oxygen-sensitive ribonucleoside-triphosphate reductase 34 21 Op 2 . + CDS 36414 - 36947 225 ## COG0602 Organic radical activating enzymes + Term 36958 - 36993 -0.1 - Term 37194 - 37232 7.1 35 22 Op 1 . - CDS 37242 - 39827 2275 ## COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases 36 22 Op 2 . - CDS 39831 - 41096 1252 ## BBR47_27360 hypothetical protein - Prom 41235 - 41294 2.6 + Prom 41176 - 41235 4.1 37 23 Op 1 . + CDS 41276 - 42607 1064 ## PPE_00907 transcriptional regulator protein-like protein 38 23 Op 2 . + CDS 42582 - 43463 780 ## PPSC2_c0958 protein + Prom 43493 - 43552 6.4 39 24 Tu 1 . + CDS 43685 - 44416 438 ## Acid_1987 hypothetical protein + Term 44609 - 44638 -0.3 - Term 44449 - 44482 4.5 40 25 Op 1 . - CDS 44520 - 45659 1504 ## COG3325 Chitinase 41 25 Op 2 1/0.125 - CDS 45662 - 46765 1266 ## COG3274 Uncharacterized protein conserved in bacteria 42 25 Op 3 . - CDS 46780 - 48156 1477 ## COG1215 Glycosyltransferases, probably involved in cell wall biogenesis - Term 48421 - 48456 -0.3 43 26 Tu 1 . - CDS 48543 - 49205 917 ## Pjdr2_3344 hypothetical protein - Prom 49353 - 49412 2.3 + Prom 49160 - 49219 5.1 44 27 Op 1 . + CDS 49398 - 49988 630 ## COG3665 Uncharacterized conserved protein 45 27 Op 2 1/0.125 + CDS 50071 - 50697 655 ## COG1280 Putative threonine efflux protein 46 28 Tu 1 . + CDS 50812 - 51582 484 ## COG3403 Uncharacterized conserved protein + Term 51592 - 51636 8.1 - Term 51580 - 51624 8.1 47 29 Op 1 . - CDS 51637 - 52293 764 ## COG5577 Spore coat protein - Prom 52327 - 52386 5.1 48 29 Op 2 . - CDS 52390 - 61155 6773 ## COG3459 Cellobiose phosphorylase - Prom 61371 - 61430 2.0 49 30 Tu 1 . + CDS 61368 - 61901 357 ## GYMC10_1377 hypothetical protein + Term 61931 - 61969 4.1 - Term 61919 - 61955 5.3 50 31 Tu 1 . - CDS 61980 - 63860 2394 ## COG0326 Molecular chaperone, HSP90 family - Prom 63920 - 63979 4.2 - Term 63992 - 64053 2.9 51 32 Tu 1 . - CDS 64059 - 67961 3184 ## Pjdr2_0886 cell wall/surface repeat protein - Prom 68196 - 68255 5.1 - Term 68161 - 68209 1.6 52 33 Op 1 1/0.125 - CDS 68260 - 69393 1253 ## COG3947 Response regulator containing CheY-like receiver and SARP domains 53 33 Op 2 . - CDS 69390 - 72512 2593 ## COG0642 Signal transduction histidine kinase - Term 72820 - 72862 8.9 54 34 Op 1 7/0.000 - CDS 72910 - 74094 1394 ## COG0183 Acetyl-CoA acetyltransferase 55 34 Op 2 21/0.000 - CDS 74101 - 74775 843 ## COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit 56 34 Op 3 . - CDS 74772 - 75482 972 ## COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit 57 34 Op 4 5/0.000 - CDS 75520 - 76305 972 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - Prom 76364 - 76423 2.8 58 34 Op 5 . - CDS 76448 - 77830 1866 ## COG2610 H+/gluconate symporter and related permeases + Prom 77932 - 77991 4.6 59 35 Tu 1 . + CDS 78038 - 78922 292 ## PROTEIN SUPPORTED gi|30995401|ref|NP_438934.2| transcriptional regulator + Term 78987 - 79021 4.0 - Term 78969 - 79014 2.2 60 36 Tu 1 . - CDS 79079 - 79462 394 ## COG0784 FOG: CheY-like receiver - Prom 79486 - 79545 1.7 - Term 79567 - 79599 3.1 61 37 Tu 1 . - CDS 79698 - 80513 542 ## BCQ_2528 acetyltransferase, GNAT family - Prom 80642 - 80701 2.3 + Prom 80836 - 80895 3.7 62 38 Tu 1 . + CDS 80975 - 87175 4621 ## COG1404 Subtilisin-like serine proteases + Prom 87479 - 87538 5.2 63 39 Tu 1 . + CDS 87610 - 88872 926 ## + Term 88893 - 88943 15.2 64 40 Tu 1 . - CDS 89194 - 89277 81 ## - Prom 89375 - 89434 2.7 65 41 Tu 1 . - CDS 89445 - 89897 220 ## + Prom 90196 - 90255 8.0 66 42 Op 1 . + CDS 90324 - 90527 89 ## + Prom 90591 - 90650 3.5 67 42 Op 2 . + CDS 90728 - 91528 621 ## COG3568 Metal-dependent hydrolase + Term 91593 - 91649 11.4 - Term 91589 - 91629 9.6 68 43 Tu 1 . - CDS 91758 - 94919 2180 ## Tery_4497 Na-Ca exchanger/integrin-beta4 - Prom 95122 - 95181 7.6 + Prom 95030 - 95089 7.0 69 44 Tu 1 . + CDS 95213 - 96298 701 ## COG0726 Predicted xylanase/chitin deacetylase + Term 96345 - 96388 6.6 - Term 96333 - 96376 7.4 70 45 Tu 1 . - CDS 96519 - 100223 1540 ## COG1020 Non-ribosomal peptide synthetase modules and related proteins Predicted protein(s) >gi|333605086|gb|AFDH01000097.1| GENE 1 215 - 691 -47 158 aa, chain + ## HITS:1 COG:no KEGG:Arth_1002 NR:ns ## KEGG: Arth_1002 # Name: not_defined # Def: serine/threonine protein kinase # Organism: Arthrobacter_FB24 # Pathway: not_defined # 8 158 340 491 492 84 32.0 1e-15 MSAKLGPSTLTVQPVEETNNNNWGHFKPAFQVLAHASIEVRIPPNRYQYEGRGHSVWYCD AEEEGVFHWYETAYMFTPIFNGTGLQNPFSLSPGVESGKALSRALTEFQVAWPFIRIEIG NENEFLDRWMTWFAQGAVNQLSSPSSMPERNTSGTWRQ >gi|333605086|gb|AFDH01000097.1| GENE 2 1575 - 1988 363 137 aa, chain - ## HITS:1 COG:RSc2322 KEGG:ns NR:ns ## COG: RSc2322 COG0789 # Protein_GI_number: 17547041 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Ralstonia solanacearum # 1 96 1 96 124 62 32.0 3e-10 MKIQELADKMGLTIHTIRFYEKEGLLDDRHVRRESNNYRNYSEEAVERLRLIKNFQSIGC SLAELKEALQECDTNMSTNLQIIDWIRGKKKEIESKKEEYDQMLDSLNKMLEYKTLLMND PQKAQEMQMTWYASSSD >gi|333605086|gb|AFDH01000097.1| GENE 3 2083 - 2937 572 284 aa, chain + ## HITS:1 COG:SPBC2A9.02 KEGG:ns NR:ns ## COG: SPBC2A9.02 COG0451 # Protein_GI_number: 19113003 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Schizosaccharomyces pombe # 1 283 1 295 295 250 46.0 2e-66 MHVFVTGATGYVGSAVVRELIGAGHTVSGLCRSEEKAAGLKAAGAEALYGTLDDLDTLRS AAAAADGVIHLAFTSDFSDLTDALALDLRAVEVMGAALEGSGKPFITTGHTAHADGQTVD HAVLAMAERGIRASIVTLSPSVHGEGDRAFVPKLINIARAKGFAAYIGDGTNRWPAVHLL DAAVLYRLALESAPAGSRLFGVGDVGIPFREIAAVIGRQLNVPTVSITPAEAAAHFGFLG PIAAFDITGLSNTAQASLATRELLGWKPIQPGLIADLEKGHYFA >gi|333605086|gb|AFDH01000097.1| GENE 4 3886 - 6159 1999 757 aa, chain - ## HITS:1 COG:CAC2220 KEGG:ns NR:ns ## COG: CAC2220 COG0643 # Protein_GI_number: 15895488 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Chemotaxis protein histidine kinase and related kinases # Organism: Clostridium acetobutylicum # 3 747 4 693 693 400 34.0 1e-111 MLSEYREIFLEELEEQLQVMDGEILKLEQSGESGTVIQSLFRAAHTIKGSSAAMGFEEMK QLTHEMEHLLDRVRSGQLAVSGALIDLLFTALDILKQLKRDIVGGEPSSADISDCVRALR SFGSEDPGLDGDRPDAEEMPAHRGKPSLSLDLGLRVQERMELGQKLFWVDIRIASECLIR GARAYVIHSALNEHGDVLLADPEPEGLDEEGPGDLLFLYAGNQSREELQVFADGLMEVER AVVEPLAQEEAAVSGAGAAERDAAGAGNSAAAAVNAADAADAGGRAGGVMSAEESAGLAR STAGVGDSGVAAVNTAGPARSAAAPAGAAGGPAAADAPPHATAPASRPSAEDASAPAKAK SPTIRVSVERLEHLMNLVGELVIDQTRIHQVERTQRRRFADETVDELGDIADHLSRIIGD LQESVMKTRMLPIEQLFNRFPRMIRDLSRMLGKEIELVLEGKDTELDRTLIEEIADPLIH LIRNAVDHGIEKPEVRTLSGKNAGGVLTIRAAHEDNQVVIYVQDDGAGIDPARMIRSALE KGIITREEAGLLSEREAVELIFRPGFSTASTVSDVSGRGVGMDIVRSHIEKLNGLIDIET RLGQGTCFKIKLPLTLAIIVGLQVKLGGRTFIVPMSNIAEIVRVNPDEIRSIQGQSVIVL RNQVIPVARLHDYLQIPYTAYPGSHIPLVIVGSAEKRLALVVDELIGNQEIVIKSLGPFI GKVDGIAGATILGDGNVALILEIASIIGRIGGQSLLP >gi|333605086|gb|AFDH01000097.1| GENE 5 6172 - 6600 551 142 aa, chain - ## HITS:1 COG:RSp1407 KEGG:ns NR:ns ## COG: RSp1407 COG0835 # Protein_GI_number: 17549626 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Chemotaxis signal transduction protein # Organism: Ralstonia solanacearum # 5 140 13 150 163 89 36.0 2e-18 MQGNGQEQYVAFGIDREQYAIRIYDIHEIIKMQAVTAIPNVKPYVKGVINLRGRIVPVIS LRTLFGMEEAEPTKTSRIVVVHHLEDTVGIMVDYVSKVTTFTDIQPPPERVGGVQGGFFT GIGLADSGLAGILKLDEVLLHE >gi|333605086|gb|AFDH01000097.1| GENE 6 6689 - 8293 1941 534 aa, chain - ## HITS:1 COG:CAC0120 KEGG:ns NR:ns ## COG: CAC0120 COG0840 # Protein_GI_number: 15893416 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Methyl-accepting chemotaxis protein # Organism: Clostridium acetobutylicum # 1 530 1 514 555 199 28.0 2e-50 MKWYRNLKTSAKLVSAFVFIAILLVFTGFFGLVNMSKLNNSLSSMYEDNLVPIRLVSDAS YYYQLIRTDLRDMNDLAETPAQKDEYKKKIDENVKKIGDKIGTYEKTEVTQGEKDLLKAY HPVWESYQKQLEEAVKIGYGNDREAFKGLIADGVFKTKGDELLKVFDDMFEINVKLAEER NAEGAALYKSSSNVTFGVMIAAFLISIGLGYAIARIISRPLNRVVGLVGKVSAGDLTEVT DIDTRDEIGQLAKSVNEMVYSLRSTVGGILTSAESVSAAAEQISASTQEIASGSVSQAGA AQTIHELFKELSTAITSVATSAEQASEVSSDALDIAQQGGKIVNSSIESMNQVNEQVSRL EEDSNKIGEIIEVIDDIAEQTNLLALNAAIEAARAGDQGRGFAVVADEVRKLAERSGEAT KQITAIIKGMQENTRQSVKAVGDGVVLSRQTGESFHNIIGMVNESANKVMEIAAASEQQA AQSSEVMSSIESISAVTEQSAASSEETASTAQSLAGLAEELNRTVAVFKISKSA >gi|333605086|gb|AFDH01000097.1| GENE 7 8290 - 8466 160 58 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MEKTRVIRALWDNSRRRTDYNPERNEGELTSEEIDDILHDLEAELRVIEGRKGRRYGQ >gi|333605086|gb|AFDH01000097.1| GENE 8 8510 - 8974 406 154 aa, chain - ## HITS:1 COG:no KEGG:Aflv_1362 NR:ns ## KEGG: Aflv_1362 # Name: cheX # Def: CheC # Organism: A.flavithermus # Pathway: Bacterial chemotaxis [PATH:afl02030] # 7 148 16 157 160 135 49.0 8e-31 MQNPNGVKDLLNSTIASMSQVFPIPIDTKPPSMLQNAVIQGEIGVLIGIVGDVEGRLVIE GDMQTFGKLGQSMFGMPLEGEMLHSFVGEMANMIAGNTSAIIYQKGHKIDITPPTVMVGQ MQLYGFEKGISIAVSLQEVGTIQMILLLQKTEAA >gi|333605086|gb|AFDH01000097.1| GENE 9 9311 - 9979 755 222 aa, chain - ## HITS:1 COG:BS_comA KEGG:ns NR:ns ## COG: BS_comA COG2197 # Protein_GI_number: 16080219 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Bacillus subtilis # 1 213 1 214 214 145 39.0 6e-35 MIEILLVDDHPSVMEGTKMLLEQDTNMKVSLAHTAKEAMELAVAQHFDVMLIDLHMPTMN GIDLAKQILNLIPDAVILIYTGFEFNNHFNLMIEAGIAGFVLKTANKEQLVTAVRCALRG EAVLPLSLVKQLRRATGSQFAETASGNPETQAVNSKEYEILKEIARGRSNKEIAASVLMS QRSLEYCLTNLFHKLNVKSRIEAAMKAKQLGLLSDEDFPKMA >gi|333605086|gb|AFDH01000097.1| GENE 10 9972 - 13511 3160 1179 aa, chain - ## HITS:1 COG:BS_comP KEGG:ns NR:ns ## COG: BS_comP COG4585 # Protein_GI_number: 16080220 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Bacillus subtilis # 782 1159 388 767 769 184 32.0 7e-46 MNEFIIGAVVCILLLTVQIILILYKRNLEKRKHHEVLVKKYGLLLKIMHTVDVGTWSYDY SSQRVPFTSEALFKITGYRAEYFATQQAWERIIHPDDFQRYRVACDNVKQGISDFSEYRI VHACGDIRWVQVRMIPTLDETGGRFVRLDGVVLDITARKSAEEALLRSEQRYRSLFEHHS DVIVELDLHGKVLDINSAALEITGNGHNITSPMSLIELFGVDSLKRLSVYFEQVVQGTTQ TFEMISHHKEGRMYHWDIKMVPVYVNDAVTGVFVLCRDITPNKRTEQSLKESEAMYRLIA ENMTDLVAVVGTDGKFRYTSPSYKARLGLDGAAAADLSLYDILHPEDEKLVRLKLEEMPE SACVWTARCRLIHANGSELHFDCVASPVQGAGGKVESIIIVSRNITERVLIERELMENEE RYRHLIELLPQPLTMIRDERFIYANPAGLELFGAALPCDFIGRSIYEFMHPDYVEQARGR ANAMAQEEYAPPLEYKMVRSDGSVIDVEVTGIYDGLSFSSLHVHTDITVRKQMEQALRDS EERYRSLVELSPVSIALYKDGQVIYVNPAAVRVLGAGCPEEIIGTAPQDWLQPGTLFEEE HAIRESGTSAPIDLAITRRDGNVVDMLATAIYDARSEAFLVFFEDITTRKQAETALLESE RLSRHLVELSPIPTILTRDHKFDYVNPAGLDLFGAGTSCSLIGRSIYDTVHPNYKDKVRA RLNAVYENKEATRIAEHKIIRLDGQIIDAEVVSIPIPYIGMDVAMTVIRDISEQKKAEKD RDYAEQIVRESKDRYYMLQTSLDRFSSDLFGLMNVQELDRRLIQEVREMIRTEKVSLVEV DKLNKITVKNGSSDIPQHVWEEIVEGCSDPLPVCEIIDTLDGHLIRIGEIKGKSYLLCIG EKSPSLVLQSKRVWIKTIARYASVLYDNFRVIEDLTQELRELATRQKTPSWLIRLLFTLS ENESKRLSQDLHDGALQEQIIWYRKLDEISSDDGVPPGLREKLAQITQGLLDVIYQIRIT CNELRPPMLKEEGLVASLEALFEFTQLRSDYSIAFDYTGFHGSLHDDDLLIGLYRIVQEL LANATKHSNAVKVQFKLSAHSDRIHLSYEDNGIGMDVSGMVESFNSMGVYGIKERVRSMD GDVEFYSSPNNGLAVFINVPVKQNQKFEIRNWSVRDNDD >gi|333605086|gb|AFDH01000097.1| GENE 11 13775 - 14476 698 233 aa, chain + ## HITS:1 COG:BH2690 KEGG:ns NR:ns ## COG: BH2690 COG0775 # Protein_GI_number: 15615253 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside phosphorylase # Organism: Bacillus halodurans # 21 228 37 244 249 173 51.0 3e-43 MSPDFYSPSSRPPAGGTPAMRRVLIMTPVEAERDAVLRGLAGAPGFRVELAGVGPVAAAI STTTALAAAEYDLVVAAGIAGGFEGRAAVGSLVVASEILAADLGAETPGGFLSLDELGFG SARVPVDAALAGRVAEALAAAGLPVSTGPVLTVSTVTGTAEHTLELAGRVPGAAAEGMEG FGAASAALARGIPCLELRSVSNAVGPRNKAAWRIPEALAMLEKASSVLPEVLL >gi|333605086|gb|AFDH01000097.1| GENE 12 14473 - 15303 866 276 aa, chain + ## HITS:1 COG:BH2689 KEGG:ns NR:ns ## COG: BH2689 COG2107 # Protein_GI_number: 15615252 # Func_class: R General function prediction only # Function: Predicted periplasmic solute-binding protein # Organism: Bacillus halodurans # 1 275 1 277 279 422 73.0 1e-118 MKIAFSPCPNDTFVFHAWVHGLVPGAPELDVLYADIDVTNSLAARPGGPEVMKISYAALP WVLSDYALLPCGGALGRGCGPLVLSRDSADPASLSGKRVAVPSERSTAYLLFRLWAAQQV PGGVGEIVVMPFHEIMPAVRDGKIDAGLVIHEARFTYPSYGLSLLADLGSWWESDTGLPI PLGAIIAKRSMDLEALAGWVRSSVEYAWAHPEASQAYVLQHAQEMSPEVAKAHIDLYVNS FTADLGEDGYGAIEALLGRAAQEGLVPKFDLKMLRG >gi|333605086|gb|AFDH01000097.1| GENE 13 15669 - 16787 1278 372 aa, chain - ## HITS:1 COG:BS_yqiG KEGG:ns NR:ns ## COG: BS_yqiG COG1902 # Protein_GI_number: 16079477 # Func_class: C Energy production and conversion # Function: NADH:flavin oxidoreductases, Old Yellow Enzyme family # Organism: Bacillus subtilis # 1 370 1 369 372 434 56.0 1e-121 MNSKFNPLFESFSLSSGVELDNRIVLAPMTNFSSHEDGTVSDAEIAYYERRSNGAGLVIT ACTYVTPNGKGFPGEFAGDRDEMIPSLARLASAIKGQGAKAILQIFHGGRSCPPELVPNG EIVSASAVAEEKEGSVVPRALTDAEIEGIIRDFGEATRRAIEAGYDGVEIHGANGYLIQQ FFSPHSNRREDRWGGDVNKRMTFPLAVVDEVQRVAAEHAKQPFAVGYRFSPEEPETPGIS MDDSIQLVNTLADKGLDYIHVSLMDFWSAPRTLDDNRPRIEIILETVGGRTPVMGVGSIR TADDALKALESGVPLVALGRELIVEPDWVGKVADGRESEIKTTLTKDDQERLVIPDPLWN AILNTPGWFPVV >gi|333605086|gb|AFDH01000097.1| GENE 14 17209 - 17931 855 240 aa, chain + ## HITS:1 COG:CAC3447 KEGG:ns NR:ns ## COG: CAC3447 COG2761 # Protein_GI_number: 15896688 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis # Organism: Clostridium acetobutylicum # 1 212 1 212 228 243 51.0 3e-64 MKIEIWSDFACPFCYIGKRRFEQALEQFSRKSELEVVYRSFELDPNSPRDISHGVHVMLS QKYGMSVEQAKTMNANVVAQAESVGLTYRMDTIVLTNTFDAHRLAHFANAHGKMHEMTER LLKAYFTDSLHLGDHAVLASLAEEVGLDKAAAEQMLAGDLYASEVRADEQEGAELGITGV PFFVIDRKYGISGAQPVEVFVQALEKAYAESKPLTILGDEGGAADGACADGVCTPPARDK >gi|333605086|gb|AFDH01000097.1| GENE 15 18295 - 19137 887 280 aa, chain - ## HITS:1 COG:CAC2601 KEGG:ns NR:ns ## COG: CAC2601 COG1586 # Protein_GI_number: 15895860 # Func_class: E Amino acid transport and metabolism # Function: S-adenosylmethionine decarboxylase # Organism: Clostridium acetobutylicum # 1 266 1 267 274 395 71.0 1e-110 MALTPEQRITLHGFNNLTKSLSFNMYDICYTRTREERQAYLEYIDEQYNAERLTKILNTV SDIIGAHVLNIAKQDYEPQGSSVTMLVSEGPVDTAPTESFEESPGPLPEAVVAHLDKSHI TVHTYPEYHPDEGISTFRADIDVSTCGEISPLKALNYMIHSFDTDIFTMDYRVRGFTRDI NGHKLFIDHEISSIQNYIPQSIKDKYHMIDVNVYQENIFHTKCKLREFDLNNYLFGYTKD KLTAEEQEEITESLTLEMDEIFYGKNIYSATLEDEEGGGE >gi|333605086|gb|AFDH01000097.1| GENE 16 19300 - 20337 1093 345 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIGCLVVLAAIAVASPGMALNIVVFLLSFVAAGGAALFVHELGHVLGAFITGRKVIKFSL GPCTLSIPQKKIIFSWKNFYYVGNVLVDVADFRDEASYERNNKKQSVIFILGPVMSLVTG ILALTLLKNSFDHLVVTLFGILSLAMGLGTLIFSDGRLAKTISDPYESLYYYWNILFTIP NVKEESLKFLLLKSETYLFDKYIGNKKGITEKFTDLFVLYYSKYFSQVIGRERINAIDFM PFLMDDLRDESGNRHNKMIISHILCEEAMGWSLAGRQDEAESLYAFVQEHGVTEPITRLK VETVLKRSVELGREYAAQRKALVQNNVFDYYEEKWLKERGLPGFK >gi|333605086|gb|AFDH01000097.1| GENE 17 20433 - 20504 60 23 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSGTFVQADVPLCVFNFLFYEVK >gi|333605086|gb|AFDH01000097.1| GENE 18 20517 - 21095 194 192 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116511598|ref|YP_808814.1| acetyltransferase [Lactococcus lactis subsp. cremoris SK11] # 1 186 2 181 185 79 31 7e-14 MNIQAVFAQLPVLETSRLVLTKIGEDNLDEVFGIYDNEEVFRHCGIIPKHNKETVRSMIG HFERDFGKKSRIKWGIFRKEDGRLTGIAEAFDFNQKVDRVTIGYFLAEDCWGMGIATEAV RLLTAYLFTEAEVNRIQAEVMPANDASKKVLIKNGFRKEGTLRQAALWSGKGIVDLEIYA ILKEDYDAAPVK >gi|333605086|gb|AFDH01000097.1| GENE 19 21122 - 22039 697 305 aa, chain - ## HITS:1 COG:BH0401_2 KEGG:ns NR:ns ## COG: BH0401_2 COG3449 # Protein_GI_number: 15612964 # Func_class: L Replication, recombination and repair # Function: DNA gyrase inhibitor # Organism: Bacillus halodurans # 147 304 1 158 158 219 62.0 6e-57 MKHEYADRIGKVIAYIEENSSRKLDLDTLAGVSNFSKYHFSRIFAAVTGVTPAAYVTRNR LENAVRLLKDTDRTVLDIAHSCGFESLSTFNGVFKRQHGKSPSELRRELQDRNFSLGDRK KREEPSSTSEYDESAGNGNHFLRRIWSMNVTLKELPDLEVAFVRHTGSYLETGRAWEKLG SWAGRNGLTPERQQFIGISLDDPSLVDEFACRYDACVTLPPDFEREGHTEVSFKKLKGGL YGRYAFYDTVDKLALAYANLYGNWLPGSGYEADDRYGLEFCMNDPLRDPEGKAKVDLYIP VRLKD >gi|333605086|gb|AFDH01000097.1| GENE 20 22258 - 23226 1001 322 aa, chain - ## HITS:1 COG:VCA0131 KEGG:ns NR:ns ## COG: VCA0131 COG0524 # Protein_GI_number: 15600902 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Vibrio cholerae # 6 315 3 303 306 232 46.0 8e-61 MNRPAKIAVAGSINMDLVVTAERLPVPGETVMGRQFRMIPGGKGANQAVAAARLGAQVSM IGCVGGDTFGAQMLEGLRGEGIDTAFVATAEETSSGVALIQVQGGGDNSIVVVPGANAAL TPERVSQAEEAIRGADVLLVQLEIPLESVRRAVEIAHRHGVKVILDPAPAAELPLSLLRQ IDLITPNETEALILTGGAADASPDASAQDGRTVSESIRQLKERTGGAGVVVTCGGKGVLY DLDGKQGADPAYRVDAADTTAAGDSFNAGLAVRWSEGAPLEEAVRFASKVGALTVTRFGA QTSLPARDEVEAFEAPFRDDPA >gi|333605086|gb|AFDH01000097.1| GENE 21 23426 - 23983 675 185 aa, chain + ## HITS:1 COG:PAE0267 KEGG:ns NR:ns ## COG: PAE0267 COG0693 # Protein_GI_number: 18311820 # Func_class: R General function prediction only # Function: Putative intracellular protease/amidase # Organism: Pyrobaculum aerophilum # 4 185 10 192 196 204 54.0 7e-53 MSKKILIIAGDAVEALEVYYPYYRVLEEGYEAVLASPQQKVLKTVIHDFEGWDTYTEKPG YLLESHISFDEVNPAEFDALIIPGGRAPEYIRLDPNIPRIVGHFFEEGKPVGAICHAALV LAALKNNKYFEGRTLTAYTACRFDVESLGANYTEETLHVDGNLVSGHAWPDLPGFMREFL KLVKS >gi|333605086|gb|AFDH01000097.1| GENE 22 24105 - 25625 1912 506 aa, chain - ## HITS:1 COG:lin1461_2 KEGG:ns NR:ns ## COG: lin1461_2 COG1732 # Protein_GI_number: 16800529 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) # Organism: Listeria innocua # 206 504 1 298 299 361 59.0 2e-99 MNTLAEVFRERQSQLLGAVADHIVLSVIALFFAVLISVPLGIYLTRKTRGAEGIIGIAAV LQTIPSLALLGMLIPLFGIGRVPAVIALVIYALLPILRNTYTGIKEVDASLIEASRAMGM NSRRRLFKVELPLALPVILAGIRTATVLIISTATLAALIGAGGLGDLILLGIDRNDSALI ILGAVPAALLAILFDLLLRAFERMSFRRFVPAAGAAVLVVLLLLLVPYFTGGKDKNLVIA GKLGSEPEILIQMYKQLIEQDTDLKVELKPGLGKTSFVFNALKAGEIDIYPEFTGTAISE FLKETPVSTDSKQVYEQAKAGMLSKFGMEMLTPMAYNNTYALAVPAQLAEERGLKTISDL QNERQTIKPGFTLEFSDREDGYRGIQKLYGLQFADVKKMEPKIRYQAVQSGDINLVDAYS TDSELKQYNLTMLEDDKHLFPPYQGAPVLRTKTLEEHPELRGVLNKLGGKISDDEMREMN YKVNVQGASAEQTAKDYLMQAGLLGK >gi|333605086|gb|AFDH01000097.1| GENE 23 25622 - 26584 1103 320 aa, chain - ## HITS:1 COG:lin1460 KEGG:ns NR:ns ## COG: lin1460 COG1125 # Protein_GI_number: 16800528 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, ATPase components # Organism: Listeria innocua # 1 315 1 321 327 374 57.0 1e-103 MIRFENVSKRYADDTVAVNDLNLEINEGEFFVFIGPSGCGKTTTLKMINRLIPLSGGTLW INGRKVSEYDIHELRWNIGYVLQQIALFPHMTIEENIAIVPEMRKWDRAKIRARVDELLD MVGLEPKTYRSRKPKELSGGQQQRVGVVRALAADPQIVLMDEPFSALDPLSREKLQNELL ELQQRIKKTIVFVTHDMQEAMKLGDRICLMNEGEIVQLDTPQGFLQNPASAFVEQFVGGQ KGLFGSRLTLEDVLLEIGPSDFPTRPAAIAKAEVPLEAAMQLLADEEVLAVEKAGVIVGS VSRQALLKFMAGRLKEGART >gi|333605086|gb|AFDH01000097.1| GENE 24 26915 - 27391 496 158 aa, chain - ## HITS:1 COG:BH2059 KEGG:ns NR:ns ## COG: BH2059 COG1683 # Protein_GI_number: 15614622 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus halodurans # 1 149 1 149 161 183 63.0 9e-47 MILVSSCLAGLECRYNATHSLVEMISELVGEGKAMMVCPELLGGFTTPREPAEITGGTGE DVLAGGAKVVDRSGNDVTGLYASGAFKTLELACKVGATVVVLKENSPSCGSRAIYNGAFN GTKISGEGVTAALLRKEGFKVISEDELLEHGLSEYVSV >gi|333605086|gb|AFDH01000097.1| GENE 25 27589 - 27774 205 61 aa, chain - ## HITS:1 COG:SP1226 KEGG:ns NR:ns ## COG: SP1226 COG5002 # Protein_GI_number: 15901088 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Streptococcus pneumoniae TIGR4 # 2 60 374 432 449 68 50.0 3e-12 MQVMPNTINRFYRADHSRTRPSGGTGLGLAIAEQNVLLHGGSIGVHSEPGKGTVFTVLLP A >gi|333605086|gb|AFDH01000097.1| GENE 26 27773 - 27970 282 65 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MGQWLSGLFRTADEMRLAALGDAEFLGTAYRLLGGAVANIAALVFMTAISYFKPLGKIRK TARKS >gi|333605086|gb|AFDH01000097.1| GENE 27 28016 - 28969 797 317 aa, chain - ## HITS:1 COG:BH1889 KEGG:ns NR:ns ## COG: BH1889 COG2378 # Protein_GI_number: 15614452 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Bacillus halodurans # 1 315 1 315 325 283 44.0 2e-76 MSKSRRQIELMITLNTKRRFTAGELAQEFGVSKRTILRDLQELTEAGLPLYSEPGAAGGY QMLREKTLPPILFSENEAVAMFFAYQSLRDYADLPFQPESLSALKKFTHYLPEETRQRIN GLRTRFTFWTPQRHVEAPHLAGLLEQAVEQRIIRIRYDANTDIVSRKIQPIGIYATNGLW YCPAYCFERSAIRVFRVDRITAIEPVEDQSGKRNYDKLTVQDYLSLSDEEGASPLHVLLD KEGVRRCSTETWMAEGLTVYEDGTGTISRMIRPDFIPWAARFFVSFGKEARVEQPAALVA AIRELIAELSVQYPGPA >gi|333605086|gb|AFDH01000097.1| GENE 28 29110 - 30189 790 359 aa, chain + ## HITS:1 COG:BS_yhaZ KEGG:ns NR:ns ## COG: BS_yhaZ COG4335 # Protein_GI_number: 16078046 # Func_class: L Replication, recombination and repair # Function: DNA alkylation repair enzyme # Organism: Bacillus subtilis # 1 356 1 355 357 321 46.0 1e-87 MELLKDLYSPSFFERFINLVKEKYPSFDGDRFRVSIYDGNWDTEAFKQRMRHITCSLTET LPSSYPEALEVLTAVAPQCRGVEYLFFPDFIELNGLGSYELSMEFLQTFTPYSSSEFAVR PFLLREPGLTLEHMKRWARHENEHVRRLASEGCRPRLPWASNLPALREDPRPILPILETL KEDPSEYVRKSVANNLNDISKDHPELVLELAKGWYGKNPATNWIVKHGCRSLLRKGDSRA LSLFGYEEIRNISVHALDVITGSIAEGENLEFSFRLVNESEDVQALRVDYEIGYRKKNGM LAPKRFKLTEKPFGPGAHPLAKRHSFKLLTTRTYYAGEHEVRILVNGTPMAAVSFEFTE >gi|333605086|gb|AFDH01000097.1| GENE 29 30497 - 31096 839 199 aa, chain - ## HITS:1 COG:BS_yocG KEGG:ns NR:ns ## COG: BS_yocG COG2197 # Protein_GI_number: 16078980 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Bacillus subtilis # 1 199 1 199 199 284 73.0 9e-77 MIRIVIAEDQRMLLGALASLLNLEEDMTVVGVAGNGEDALKLVHEHKPDVCIMDIEMPAK SGLDAAEELKGSGCKVIILTTFARSGYFERAMKAGVNGYLLKDSPSEELADSIRSVMAGR RLYASELVDEAYSEENPLTEREKEVLLLIADGKNTKEIASQMYITTGTVRNYISVILDKL DVSNRIEAITRFKEKGWFK >gi|333605086|gb|AFDH01000097.1| GENE 30 31093 - 32229 1218 378 aa, chain - ## HITS:1 COG:BS_yocF KEGG:ns NR:ns ## COG: BS_yocF COG4585 # Protein_GI_number: 16078979 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Bacillus subtilis # 8 366 8 366 370 356 51.0 4e-98 MQNWIRIFQKNTGLSPYVWVVFYILPFYFIFSSGSTLKNAFGIGMIIVFFSCYVLSVVSK GWLVYFWTSVQIVVSIAMTLLFGYVYFSLFLAFFIGNIQNKIGFFTFYTIHLVSTIATIN FGFVTQNPIFITQLPFVLISLIGVILLPVNTYTKNKRDKLQEQLEDANKRIDELVKLEER QRIARDLHDTLGQKLSLIGLKSDLAGKLIAKNPSQARAEINDVRQTARSALKEVREMVTN MRSTRVAEEMFRVKQILKAAQIAFKLEGDPKQIDTSLMTENVVSMCLKEAVTNVVKHSGA TACTIVIEPSRTDLVVKVKDNGNGRAEQFDYFRGNGLRGMKERLEFINGTLEILSDGGTT VVIKIPIVLKQPAKEAGK >gi|333605086|gb|AFDH01000097.1| GENE 31 32295 - 33350 1169 351 aa, chain - ## HITS:1 COG:BS_yocE KEGG:ns NR:ns ## COG: BS_yocE COG3239 # Protein_GI_number: 16078978 # Func_class: I Lipid transport and metabolism # Function: Fatty acid desaturase # Organism: Bacillus subtilis # 5 330 9 334 352 444 63.0 1e-124 MSQTKVMNLKKDVAPYEKTDTRSSIRQVFNTIVPLLLLWYAAYASLAVSYWLTLPLALLT AGFVIRTFIIFHDCCHQSFFKSRRANDILGTITGILTLCPYEQWKYSHSVHHATSSNLDK RGTGDMWVLTVEEYAASPWFRKAAYRIYRNPLVMFGLGPIAVFLIQYRFNRKKAKRKERI NTYVINVSIVLLYALMCWLIGWQAFVLVQAPVFFVSGLLGIWLFYVQHQFEDSYFEKEDE WSYVKAAVDGSSYYQLPKVLQWITGNIGYHHVHHLSPRVPNYNLEKAHNSTPPLQKATTI TLRTSLQSLRFRLWDEKGKTFVSFKDVKHVLRRPGAASDVLKNPKPGFQGE >gi|333605086|gb|AFDH01000097.1| GENE 32 33629 - 34186 677 185 aa, chain - ## HITS:1 COG:BH1768 KEGG:ns NR:ns ## COG: BH1768 COG4474 # Protein_GI_number: 15614331 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 1 183 1 182 189 161 43.0 8e-40 MKNLLVTGYRAHELNIFNEKHEGIEYIKKAIAGRLVPLIEDGLEWVITPGQYGVDLWACE VVIGLKKEYPQLKLSILTAYANPEEKWKEDKQEFYRGILKDVDFYGAVSKQPYAGVWQLQ ARDDLLLRKTDGLLLFYDEEAGEGSPRFMKERALKKQNEDGYAVMIITPEEVQDIADEEN RSDFY >gi|333605086|gb|AFDH01000097.1| GENE 33 34438 - 36417 1217 659 aa, chain + ## HITS:1 COG:CAC1209 KEGG:ns NR:ns ## COG: CAC1209 COG1328 # Protein_GI_number: 15894492 # Func_class: F Nucleotide transport and metabolism # Function: Oxygen-sensitive ribonucleoside-triphosphate reductase # Organism: Clostridium acetobutylicum # 6 657 92 689 699 423 38.0 1e-118 MSLLGRPNQSNTDALLEEIKKWGDAIMEGSDADLLRENANLNGESFSGKMSKFGSEYARW YARRFTMPAVLVQAVDANYLYVHDLDQYVLGTTNCIFIPFAKLLRRGFDTGSGSVRPPNS ISSAMALVAIIFQSQQNAQYGGVSANKLDHDLAPYVAKSFAKHFRKALRYFGENEPVDDE RGISMSRADLRLLCPESYRYALEETEQETMQGAESLIHNLNTMSSRAGGQIPFTSINYGT CTSPEGQLVIRSVLTATIRGLGHGETPIFPIQIFKCKKGVNLEPGAPNYSLFLKAAECSS RRLYPNFANLDAPLNLEHYDPADPDTEFATMGCRTRVVADRFGRNRLSGKGNLSFNTLNL VKPGIEYGIVSGRRSKADEAGFYRKLTRQLEIALDGLLHRFGIQAAQKTKASDFMMREGV WEGGEQLDPDEPVGDLLKHGSLSIGFIGLAECMKAMYGSHHGETPQVYAKAIELIRYLRN FCDAKSEALNINLTLFATPAEGLSGKFTKRDRETYGCLPGVTDREYYTNSFHIPVYHPMT SAEKISLEAPFHELCNAGAITYVELNGNARNNLPAFVKIIKFALSRQVSYFSINHPIDRC GACGYEGMIGAVCPACGSHEKDVHIRRLRRVTGYLTGDYQTRFNGAKQAEVRDRVKHSP >gi|333605086|gb|AFDH01000097.1| GENE 34 36414 - 36947 225 177 aa, chain + ## HITS:1 COG:SP0205 KEGG:ns NR:ns ## COG: SP0205 COG0602 # Protein_GI_number: 15900141 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Organic radical activating enzymes # Organism: Streptococcus pneumoniae TIGR4 # 13 171 29 185 196 134 40.0 1e-31 MNICGYAPETIDEGEGLRTALYISGCRHYCRGCFSPRTWDFDYGTPIGTYWEERIIAELQ SNPLLDGLSILGGDPFFSAGQVSSFLDRLRQKAGTVNVWIYSGYTYEELAANPESGEFGL LSRCQVLVDGRYVEELRDPALLYRGSRNQRLIDIEASLRRPKAVLWQSAWDREPPTA >gi|333605086|gb|AFDH01000097.1| GENE 35 37242 - 39827 2275 861 aa, chain - ## HITS:1 COG:TM0742 KEGG:ns NR:ns ## COG: TM0742 COG0639 # Protein_GI_number: 15643505 # Func_class: T Signal transduction mechanisms # Function: Diadenosine tetraphosphatase and related serine/threonine protein phosphatases # Organism: Thermotoga maritima # 214 443 5 205 209 66 26.0 2e-10 MNIQTRIHTIFMLVGSTECGKTTFAKEVLIPGLQFEASDKALKANVQYLSSDRIRQEILG FDYDKYEQIMLESSGQAFHLLFERLKMATSFPVNAEFVVVDTTGLAEDFREKVRAVAKEN NYNLEVILFDYRKRHDYYASERSKKLITSHINRLKKDVMGSLSREGYTKIHKVRAKDFYS PEEGKANGAYTVEILDLDEYLAAVLPQEYDCIIVGDVHECVDDLKGLLLDYGFKLSGNSL ELSEKLRHTKIVLTGDWIDKGHHTRAIVEFLYENREHFLLVLGNHENFVFKYLKGEIGGV EEELFHSYFTSVETLRKDAELLRKFNELVGMSKPFYRKVGTRGPSFYVTHSPCRNKYIGK LDGNSARHQRNFRLDREESFERQLAFLKDEAVKNHPFHVFGHVAAKNAFRIGNKVHVDTG CVSGNKLTAVSLSFKPFFKSRSAGAAVLPEDLPVLFREERKVTLGDLEAEELRRLHYCSR NRINTISGTMSPADKDEAAGELESLRQGLCYFADHGVDKVVLQPKYMGSRCQIYLHRDPD HCYGVSRNGYKIKGADLSDIFRSLLVKYSSYMEENQIAVLLLDGELLPWHALGEGLIERQ FRPIEKALEAELDFLKANGFEEAFGKLAEAYAASGFEKDQFTMPKARLSEKYGASVYQNY KHMRGLLEKRVPLEEYETAYRTYKRQLELYGEAGEPEYKPFAILKIVYENGEEQIPQMAT SEAYEFLSGDEFLQLDLSDPDSYEKAEAYFESLTTGLHMEGVVIKPELPGSETVPYMKVR NRDYLTLVYGYDYRFPHKYAKLMKQKNIKLKLRTSLNEYLLGQKMLAVKYGDIAPDHEGY KEAAANVLFEVAKEKEIDPRL >gi|333605086|gb|AFDH01000097.1| GENE 36 39831 - 41096 1252 421 aa, chain - ## HITS:1 COG:no KEGG:BBR47_27360 NR:ns ## KEGG: BBR47_27360 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 1 421 1 421 421 581 65.0 1e-164 MAIVQLSSTNPQFSYLIRKNPESGMLLRPVRKGIAYGWYTGENTFNVYFKDADNEISYKQ HDKEEFEYLNVSRYNTPLFPLNAWNEFFTAPLKIRDERDSEGFTHTVRIPMIHIEMIRYI HFFEKHLPDFSFEIAHQAHKTYSLTVTTGRSLYHLLHAVSVLCLFLSTFGNEYIDISDLL LEKYIRSVQVIDAPFYIRSLFVRNFLNSRERFKKYKGELEKTDRYEIDFDFGGTGHQRRT FIRGQLPFDKAVLDIGCGEGFYAIPFAAKLEDTYYAVDIDEAALETVSRKARAKELDNLV ALPSIRHFLDQYNGEQVDVILTEVIEHMSPEEAQALIVQVCAEVDFDRFIITTPNADFNP FYELDGYRHPDHKWEMGREEFGQWIAGFIGTTGCQAEPVAIGDGVNSIRTTQGVILRKKE A >gi|333605086|gb|AFDH01000097.1| GENE 37 41276 - 42607 1064 443 aa, chain + ## HITS:1 COG:no KEGG:PPE_00907 NR:ns ## KEGG: PPE_00907 # Name: not_defined # Def: transcriptional regulator protein-like protein # Organism: P.polymyxa # Pathway: not_defined # 1 443 1 441 441 613 69.0 1e-174 MARESFDKEIQFLRLLVLTSGAYSRQQFAERLGISVHTFDKTLRRLKEIASTVSYPLAEE QGREFAEMLRFNYYESSDPLLLFLYRAKSMKESESRRLPFLLAVMQEQDQAMSAGELIDA CCGGMPDDVPLPDEKTIRSDLKYLEEVGVIRKEGSGRPYRYRLHNDLILHLSREELLDLY DFADVMANTRLPSVQGYLLRDSLKKAIRQQGLEAAIAEPFLYKYHYYSRILDEAHLFPLF QAIRQRRKLRFLYFSPKTHKSYASRNTNPLFERETNGKQAHVLPLKVVYDHQYGRWYLLA SDARQGIMKFRIEGLTQIEEQNPVPEEEFRCKLAELEEKTRYSWLIDTSGPVKVRARFYR PLNAPADFIKERVLLQGQWGTITEENEESFVYEITVNGLTEIKPWLRSFGSSCEVLAPRQ LRKEFIAEWKEIHAYYEPVRENL >gi|333605086|gb|AFDH01000097.1| GENE 38 42582 - 43463 780 293 aa, chain + ## HITS:1 COG:no KEGG:PPSC2_c0958 NR:ns ## KEGG: PPSC2_c0958 # Name: not_defined # Def: protein # Organism: P.polymyxa_SC2 # Pathway: not_defined # 1 266 1 266 266 267 55.0 3e-70 MNLFEKIFNYQMISRLEESGVVALTSHERTWLKSALRHPAAEEAFAADTLTKLRSLLEEE ADLETDSLVTEKAKSPDKQVYHPLLRPLRRFMRERQGIRLSYRIRNGRTMESQSGIPYKL EYSMVKKEWYLLWYHLRNRMYMATKLGSILELEAEAPADGVYEEITAKLDQSTRLRKESS VIEVVRTYNRELSRILYAFSCFEKEVSYDDERDLYRIRLTYMREDAEYILSKIRFLGMRV KVVEGRHLRWRMADSSARALARYGDEPEETGGISPDLETEKHIETPKASAPGS >gi|333605086|gb|AFDH01000097.1| GENE 39 43685 - 44416 438 243 aa, chain + ## HITS:1 COG:no KEGG:Acid_1987 NR:ns ## KEGG: Acid_1987 # Name: not_defined # Def: hypothetical protein # Organism: S.usitatus # Pathway: not_defined # 4 216 7 220 257 225 47.0 1e-57 MNETVYNPDFFKSQQDGSRKSACEIVPILLDLINPESVIDIGCGTGAWLSVFKDLGVGDI LGVDGDYVNEDMLQIPKENFRKHDLTAFFSSGKQYDLVVSLEVGEHLPHASAETYVNTLV SHGDAVLFSAAIPYQGGKNHINEQWPGYWAELFNKKGFVAIDCIRKQVWENAHVQWWYAQ NTLLYVREEALSRYASLQDYQPSESEPLSLVHPRLYMHLAKDFFGDDGYKDGNIIGRKFT PRI >gi|333605086|gb|AFDH01000097.1| GENE 40 44520 - 45659 1504 379 aa, chain - ## HITS:1 COG:BH0916_1 KEGG:ns NR:ns ## COG: BH0916_1 COG3325 # Protein_GI_number: 15613479 # Func_class: G Carbohydrate transport and metabolism # Function: Chitinase # Organism: Bacillus halodurans # 76 377 130 445 450 194 33.0 2e-49 MKIHLYTKLFVALLISGMGFYFYTTTQAKDHKINSVYVIPTGDKLDQINFEEKKIDIAFL AFAQIGDKYKVSFHKDEAADAEIKENIKKLKKNNPKTSLVLAVGGYGADGFSDASLQENR RTFTDNIIALVKELGLDGVDIDWEYPASDAWGTQKSRSEDTQNFTFLMKELREKLNQLPH KNKKYILTFASGTQDWYFKNVEVKKVEKYVDYINVMSYDLTGKWSDTTGLNSNLYKDAEN KSIDSVDSIVKLYLSHQVDPAKLLLGVPAYSYGWEDVKSDGDGSFSPGKPIDIDKTDLSY KTIEEKYMDKNGFKRYFDEKAKAAYLYDGETFISYEDKEALREKIAYIKANNLGGAMVWE YSQDADDGLVKYLGDHLNE >gi|333605086|gb|AFDH01000097.1| GENE 41 45662 - 46765 1266 367 aa, chain - ## HITS:1 COG:RSc3292 KEGG:ns NR:ns ## COG: RSc3292 COG3274 # Protein_GI_number: 17548009 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Ralstonia solanacearum # 13 310 3 285 336 108 30.0 1e-23 MNNAVLKTNRIIYIDLLRILSILAVIILHITATLLTSTNDFNTASWWVSNLFNSAARFAV PVFFMISGAMILRSEVKSYKTFFLKRIMPLVVSLVSWSLIYSIFTQYYLQKSTMGAGEFL LSFAYKFILDRNYIHLWFLYAIIAIYLTVPLISRMVKACTEKELRYYLLLWFTVSIAYRF ITDCVLRITSESLYVPIMNIPLFMGYLGYFILGYYLFHYEISRKLKNVLFNLGIVSFFLT PVATYFASMYSGVLDEMFYGNYSVTTFFMAAGLFILFKEKDVAISAKVNDKVKRLVGSIS KASFSIYLIHLLIEIMVSRRTEVEGSLVETTVTLLFNLGAVFVVSYILVKILNLNKIVTN VLFGGKG >gi|333605086|gb|AFDH01000097.1| GENE 42 46780 - 48156 1477 458 aa, chain - ## HITS:1 COG:mlr6694 KEGG:ns NR:ns ## COG: mlr6694 COG1215 # Protein_GI_number: 13475588 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases, probably involved in cell wall biogenesis # Organism: Mesorhizobium loti # 41 442 65 475 475 221 32.0 3e-57 MQILLYVTTIVFLAFQLLYTFIPLLFSKVKKLEEGLEEKSISVLVPAYNEELTIRNCIEA MEGLKYRNHEIIIINDGSKDATLRRLQELLDLQEDDRQVMQELTYQPVRAFYRSRQYPHI YVIDKQNGGKADSLNAGIDYALSDIVITLDADSMLEAHSLQYVNQYFHDPDVMALGGTVK IVQGAERKDGQIQERFTGKGLIKSQIISYIHGFYVRKLTQSALNSIVVISGAFGAFYKDV LIQVDGFRSTVGEDIDITLKIHEYIKANNLSKKLVYAPEAVCYTECPENMPNFYKQRIRW QKAFVDCILIYWSDLPRKFNLGVRLFFAIDGFVLGTLTAFTTFVYLFQLLIAGDGIWMAL LILSATLLINAIQIVISLVLCKKYGSTYTLKDYIHMFIFSQLELLTYRNVLLYINIVGTF KYFDNDEGWGYVERKGIASISRNVTAPPSAPAAPLSQS >gi|333605086|gb|AFDH01000097.1| GENE 43 48543 - 49205 917 220 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_3344 NR:ns ## KEGG: Pjdr2_3344 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 2 218 55 272 274 171 44.0 2e-41 MAYTFSTITASNGVKLYSIKTSPKNITIKSIGASSVVGQTAYGVNGGYFYDGTLLQIAVN NNIPVAPNGSENAKYARGTLVWDDKNGEFSVQVVRKTDEILVANKSNYWAQGGISMMLKS SESAWKTQAAAENIQNPDGAANRTALVYNNTNNIWLIVTDSKPTAAAFRTAIKEKIGSGT LVDGIFLDGSGSSQYKVAEGSYGGSDATPRLVYQIVALKS >gi|333605086|gb|AFDH01000097.1| GENE 44 49398 - 49988 630 196 aa, chain + ## HITS:1 COG:DR0613 KEGG:ns NR:ns ## COG: DR0613 COG3665 # Protein_GI_number: 15805640 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Deinococcus radiodurans # 4 181 11 196 216 124 36.0 1e-28 MSTQKWRIPATEGLGFRLGKGQTVRITDVEGEQVADIVAYRADNPTEKFDPTVTMDALRK MKVTPGDILYSTRYTPLLTIVADTVGQHDFINSACRPEMYEFTYQKKDHACCYHNLNRAI AQFGIEPPEQHYPFNLFMHTVIQPDGSISVKRPLSKAGDYVDLRAETDLLVAMSACPASE SICNGYVCTPIEVQIL >gi|333605086|gb|AFDH01000097.1| GENE 45 50071 - 50697 655 208 aa, chain + ## HITS:1 COG:BS_ycgF KEGG:ns NR:ns ## COG: BS_ycgF COG1280 # Protein_GI_number: 16077378 # Func_class: E Amino acid transport and metabolism # Function: Putative threonine efflux protein # Organism: Bacillus subtilis # 1 208 1 209 209 203 54.0 2e-52 MNAFLAYVVLGISLSAPAGPVNAAQLEKGVRFGFLHAWLVGAGAMVADLFYMLLIYFGVA HFLDTPFMKTFLWLFGCFVLLYTGIVTLKSLKLRESGEMRESPSEMSSFRSGFFIALTSP LTILFWLGIYGSILTQSSQSHDAGQALWHSLGVFVGIMVWDVSIALIASSFHRFGNRLIL QITSLLAGISLILFGLYFGYQALLMLAG >gi|333605086|gb|AFDH01000097.1| GENE 46 50812 - 51582 484 256 aa, chain + ## HITS:1 COG:BS_yqcI KEGG:ns NR:ns ## COG: BS_yqcI COG3403 # Protein_GI_number: 16079635 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 1 249 1 249 254 278 52.0 7e-75 MAELRSKIWIEENRMDLPEWQRTAFEEFAAMIAGPENKYPCVPGHLGYVTNNLRYGFAPD PRSAQAVSDTAELLNAYGSCSRETGKYASLVIFFDTPEDLKNHADVLEYETLFWSLLSRL HDKDTAPWPEDIPQDPAKPKWEFCFAGQPYFAFCATPAHGQRKSRHFSSFLVAFQPRWVF NEINETTAFGRNISKLIRKKLADYDDVPVHASLKWYGQQDNQEWKQYFLRNDETSPSRCP FMAMKNQLKNNEPFHK >gi|333605086|gb|AFDH01000097.1| GENE 47 51637 - 52293 764 218 aa, chain - ## HITS:1 COG:BH3888 KEGG:ns NR:ns ## COG: BH3888 COG5577 # Protein_GI_number: 15616450 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Spore coat protein # Organism: Bacillus halodurans # 13 210 29 226 227 233 63.0 2e-61 MQQQNYFNNQNQQGAPNFNHGGHEFFDMHEVLSGTINVLDQFMLFRTFVKDPELLNILDR QYSFILSQYNLTAECFATGQKPSHETATYMMQQPTNIQYGIKPSQPKKPNQSLADVKDAG ISGHMLGLIKTHASLLTMSAVEVTNPVVRRVLASQVQNFIELAYEIFLYQNKHAYYQVPQ LQQNDMQSMLNTFIPAPGYPQTPVGHQANQANFAPRYQ >gi|333605086|gb|AFDH01000097.1| GENE 48 52390 - 61155 6773 2921 aa, chain - ## HITS:1 COG:mlr8325 KEGG:ns NR:ns ## COG: mlr8325 COG3459 # Protein_GI_number: 13476875 # Func_class: G Carbohydrate transport and metabolism # Function: Cellobiose phosphorylase # Organism: Mesorhizobium loti # 479 2894 450 2842 2863 1465 36.0 0 MTYTNEQLSQKARELALQHVTTLPRTRPAYIEQHFKKDIESLRDFVLSLQTVHAGCTQPA EQWLLDNAEFVEEQAQEVRALLLQDALGRMPRLRGNGLLRIQSMMEDYLTHVEGILSEET ILAYIQAYQEVSALTLTEARSVPLILRVVLVKKLAETMAFVRERREVCIDVGRILSLIEP AALSPETVHLQVEKAGLTIPLPGPWIVHLISHLREWAGDTASVREWLICSYENGAEDLDR IVSYEHQLQAAYQVRAGSVITSLRKNERWDWNDLFEQISLPDRTLRLEYTGMYPLLDAYS RNQILAEVERLARRLRVPENLVAGQAAALAREAAERAEAARAGSGSLGAAAAHADGRSGS SLAADLPAADTGESLRQPQTPATAAASPQSDVLILHENGEVTASLAAGDRTRQQFPSYYL FESEGVQKLIASLRKCSSPRTMPENAITKRRTGTYFASMLGLFAVLWLIATVWIGSGYGL SALAWAAVLAALLLPVSEWGMTWLHFAIERICRPRPLLRYDFSAGVPAEAGTMVVIPAIW SSPDEVAELADRLEVHYLANRDSNIHYALLGDFTDASEETLPEDDRLVRLAGDKIRALNA KYSMAGGTTFHFYQRRRLWNPREGVYMGWERKRGKLVEFVELLKGSGETSYAVKLGDASV LPRIRYLITLDADTQLPMGSAQRMIGTLHLPYNRPRLNKARTRVVEGYGVLQPRIGISHD SAMRSRLAYFWSEPGMDPYAFAASDPYQDALGQGIFTGKGIFDVDVFAELLCERIPDNTV LSHDLLEGGFMRAALLSDIELIDDHPAKFVSYQKRLHRWVRGDWQLVCWLFSRICDRRGV LRPIDLSFLTRWQMLDNLRRSLLPPAVFVLLVLAWTVLPGSPWRWAAVLLATMFLPLLRQ LFMLHRIYRQPKRLLATALHVVIQIWTLPFQTAVLLDAIGRTLYRVFVSKRRLLEWTSSS HIERSSREQRRTPLLQAGWGYVLILVFALASAVQASASLLWAGLALSLFWALAPLAVSWL DRPVEREEAPLGAEEQEKLRMLARQIWSFYEDYAGPKDHYLPPDNIQVDPPNGVAHRTSP TNIGFLLTSALAAREFGFIDTPSLVEKLENTIGTVENLEKWHGHLYNWYDTLTLGVLPPA YVSTVDSGNFVASLMTVKQGLASRLRQEGETQGRFTGISPAEAGAYGVEFAVDLDQTPRG ESALNGIDGKAGKGREDGKNGIDGRGQKGQNLGNGGYRPAVLTAEGSRLEQADREDPSNL PDWLIRGQQLVQRLEALIGATDFTQLYDHKAKLFVLGYHGATGERDSILYDLLASEARQT SFVAIALGQVSVSHWMALGRTVKLQGNKTTLISWSGTMFEYMMPWLIMRTYRNTLWDSTY RGVVKRQMEYAHERGVPFGISESGYYAFDYQMNYQYRAFGVPGLGFKRGLEEDLVIAPYA AVMALPFALREGLEDLNRMEELGARGKYGFYEAIDFTADRMPQGEDCKIIRSFMAHHQGM SLLTIANLLLPVKMYDYFHSDKRVQAAELLLIERIPPRESMLTRELTGKSRIQKPAAERA YSAPENIGADTPAPEVGVHSNGTFTTAVTNSGSGFIRWNGLAVSRWREDPVGDPWGVYLY IRDVTREKVWSPTFQPCRVPSDSQSVRFSQERTTFRREDDGIQTVLEITVSPEMNAEVRR LTLENKNREARIVEVTTFLEIALALPDADKAHPAFTKLFVETQFEEETGCLLARKRPRNA GEKSIWAFHNLSVFGAVLGPAEFETDRAAFIGRGHSLARPKGLASRLEGTVGSVADPAFV MRRRISLKPGESVRLCAVTGIADSKEQSLNMVRQLFQAQQVDRTFRLAWTRSQIDLQHLH ITSAEAAVYRALAGRVLYRGPFKPEQAESIAANSKGQQGLWAYGVSGDRPIVLARVADSA DLPFVQKLLGGFEYLRRHGLFFDLVLFNESPGGYQQELRDALVRLSEQAAGNAGAAGQGG IHVVPASAMPEEDHTLLLAAARVVLRADGPSLRAQLKIWPRKDAYDVPLPVTSGEAPAPF RPDASPVFGTAGDTGGATDTAAGISAVPGTAEDATAATDIATGTTAASDTTAPAQAKDTT AAQVTGMGQDSPGSLFFNGWGGFSPDGREYRITLKNGEHLPAPWINVMANPRFGCLASEL YTGYTWWGNSRECKLTPWSNDPALDPPGEVFYIRDEQNGDFWQMAPSRRQDDPSVYRVAH GRGYSRYEHESRGIRQKMTVFVPLEDPVKIIEVKLRNTTSHSKSLSTTYYAEWVLGVQRE GNASFIMTDWDDEADSLIARNVYQENFRNATAFLTVHAGESSLSWTGDRLEFIGRNRTIE DPAAMRRLDLSGVTGPVYDGCGAVRTKFELEPGAERTVYILLGCGDSREEAVRIARKYRE PDACTAAYEAVRTFWEDLLGTVTVSTPVLEMDMMLNHWLLYQTLACRMWARTAFYQAGGA YGFRDQLQDSLALLNSRPDLTRGQILLHASHQYEEGDVQHWWHEETHRGIRTRFSDDLLW LPYAVSRYIDHTEDGSILDDTVPFLTSKPLEADEHERYEETVLSGNSGTIFDHCLRAVDR ALKFGEHGLPLIGIGDWNDGMSMIGPEGRGESVWLGWFLGDVLQGMADLCEIRGKQELAE RFRSQREKLAAALNESAWDGQWYRRAFTDAGQWLGSIHNAECRIDSIAQSWSVISGMAPD DRARQAMKSFDRELVDRSLSVAHILTPPFDKTDPSPGYIQGYPPGIRENGGQYTHGVIWS IVAWCGLGNGEKALELFQMFNPIMHTKTAAEVRKYVGEPYAMAADVYTEPPHRGHAGWTW YTGASGWMYQAGLEWILGIRRRGAKLYIRPCIPPEWPEFSAVYRFGESEYRITVLNPSRK SSGCTRLMIDGQETDGDFSSGEGPFVPLTDDNRLHEIVVTL >gi|333605086|gb|AFDH01000097.1| GENE 49 61368 - 61901 357 177 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_1377 NR:ns ## KEGG: GYMC10_1377 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 167 1 165 167 164 46.0 2e-39 MELYFKENFFSTGKSPILEASGIQAGTLDMKHMLSSSLSVLDSSGRKVCSDSSRLLSLGR KWDITDGRGNILGVLRPRFTLLAKKYEYDAGRRGIFDIESPLLSKHYTIRDSSDALAAEF RQVNGWLQSGAFRLRNESPMLDSFELIAVIMGVHELQRRNHMTGSTTESQTYTPNQF >gi|333605086|gb|AFDH01000097.1| GENE 50 61980 - 63860 2394 626 aa, chain - ## HITS:1 COG:BS_htpG KEGG:ns NR:ns ## COG: BS_htpG COG0326 # Protein_GI_number: 16081033 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone, HSP90 family # Organism: Bacillus subtilis # 1 626 1 626 626 918 79.0 0 MAKKQFKAESKRLLEMMINSIYTQREIFLRELISNASDAIDKIYYKALTDDSLAFNSDNY FIKLKADRASRTLTLSDTGIGMTKEDLENNLGVIAKSGSLAFKKENEAKDGHNIIGQFGV GFYSAFMVADVVTVISRALGSEEAFKWESKGADGYTIVPADKETVGTEIILKIKENTEDD NYDEYLEEYRLKAIIKKYSDFIRYPIKMDVSGRRPKEGSDDEFEEYQEEQTINSMVPIWR KNKNELTTEDYENFYAEKRYGFDKPLKHIHISADGAVVYKAILFIPESTPFDYYTKEYEK GLELYSNGVLIMNKCGDLLPDYFGFVKGMVDSEDLSLNISREMLQHDRQLTLIAKNIKNK IKSQLQSMLKDERENYEQFYNSFGRQLKFGVYNDYGTHKDDLQDLLMFTSSKEKKLVTLD EYVSAMPEDQKYIYYASGESIDRIEKLPQTEMVLDKGYEILYFTDDVDEFAIKMLMAYKE KEFKSVSSGDLGIEPDAADKQTEEEENDSKDLFEAMKAILSDKVKNVKASKRLKSHPVCL STEGELTIEMEKILKAMPNGQEVQADKVLEINVNHDVFRSLKEAYANDKDKLSLYTNLLY NQALLIEGLQVSDPVEFTNSICKIMV >gi|333605086|gb|AFDH01000097.1| GENE 51 64059 - 67961 3184 1300 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_0886 NR:ns ## KEGG: Pjdr2_0886 # Name: not_defined # Def: cell wall/surface repeat protein # Organism: Paenibacillus # Pathway: not_defined # 125 1300 1178 2316 2316 525 37.0 1e-147 MHQRKSSFRWISVMLMSVIVLNAVLFGGAGPVKATPPGGLSAYNAAVIAAEMYQAILDYP NDIFETVQQKDIFDSNRKADNDAIVDELISKRPFATVTDLRDAYGIALDNRNFFLFLHEA TDNSGVSAALSWVNDGTFVNPGLDLSKYSALDYTEQSVVDKAVLDGIPADGYTAAAEIQT IIDTTIGQIVSGALQDDKTALEIGYATGDSAAHVTQNVTLPAAGTHFTQITWTGGNGVID PATGTVTPSTGGDVTAVLQAKISRNNENVTKDFTLTVKSSAPPAAPPVITAHPQSTPPVL EGMPASFSVTATGTGLTYQWQVNIGSGFLNLPGDTNATLSIPAVSPVMNGYTYRVVVSGT GGQSVTSNAAVLNVVPMIPNPTFPPMITAQPQNTPPLLEGTPASFSVTATGTGLTYQWQE DSGMGFLNLQGDTNATLSIPAATANMNGYTYRVVVSGTGGPPVTSTPAVLNVVPMLPTFP PVIMIHPQSPSPVLEGAPAAFSVLASGMGLTYQWQVNTGQGFQNLPGELSVVLDLPAVTM NMNGYTYRVVVSGTGGQSVTSNAAMLTVLPSIPNPTLPPVIVVHPQSPPPVLEGAPASFS VTATGSKLIYQWQEDSGNGFQDMPGETNATLNIAAVSQGMDGYRYRVVVTGKGGLQAISN DATLTVTQPIVPPVIKNQPPEDLSVPKGARINLSLKADGRDLSFQWQVNTGTGFHDLPGE TGALLSIFPVTQEMNGNKYRVIVSASGLYPTTSDETLLTVYTVPSAPTNVTATAGDGQAV VSFTAPSDGGNAITGYEVTVSPGNKVVSGMASPITVTGLTNGTAYTFTVKAFNAAGDGAA SASSNAVTPYVSSSGGGGGGGGSSEPSTPTPTTPSVPEVPANDGADILVNGKTERAGTLK STEVNGQSVLTVVVDPKKLDEKLASEGQHAVVTIPLAKDKKADVLVGELTGQMVKAMEQK QAVVKISFGDITYTIPAEQINVSALSDQLGKPAALDDIKVRIEVATPSKETLKVVENSAA DGNFTLVAPALNFAVKGTYGGTTVEVSRFNAYVERTIAIPDGVDPSKITTGVVVEADGTV RHVPTRIVNVGGRYFAKINSLTNSTYSVIWHPVEFRDVAGHWAQNAVNDMGSRMVVSGVE NGTFNPDTAITRAEFAAIMVRALGLKQEKASAPFSDVKATDWYSAAVQTAYAYKLIGGFE DGTFRPSDKITREQAMVIMAKAMKTTGLRDKLPSQEAAESLAPYADAAATAEWAKSGVAD CLQGAIFAGRTATELAPKASITRAEVAAIVQRLLQKSELI >gi|333605086|gb|AFDH01000097.1| GENE 52 68260 - 69393 1253 377 aa, chain - ## HITS:1 COG:BH2016 KEGG:ns NR:ns ## COG: BH2016 COG3947 # Protein_GI_number: 15614579 # Func_class: T Signal transduction mechanisms # Function: Response regulator containing CheY-like receiver and SARP domains # Organism: Bacillus halodurans # 42 370 1 329 337 188 33.0 2e-47 MKAILIDDEKPALIQMERLLQSDGRMEVAGMYTQARHGLEHMTAEKADIVFLDIEMPEMN GLEAAEHLYRLNPEAQIVYVTAYNDYAIEAFELGAIDYLLKPVDPERFAKTVSRLESRLS QLQAVRREAAPAGAPAVLCFKQLSLAGSAGTGGSLRWRTQKAQELFAFLVHHGSKRVAKD VILETLWPELSLDKAVTQLHTSVYQVRKMLKAWGIGAGIDYSHDSYRFTGDDFRTDVDLF LAGASVGEITSREQWRRLDQALQLYRGDYLEEHDYFWAKSYRAQLLGQYIQASLLASAYE VSAGQTQSALRRLELLQKKEPFSEEICRAGMEVHAGLGDMLSLKKHYEAFASALREELGS EPGRETTNLYKHLMQSI >gi|333605086|gb|AFDH01000097.1| GENE 53 69390 - 72512 2593 1040 aa, chain - ## HITS:1 COG:BH2013_1 KEGG:ns NR:ns ## COG: BH2013_1 COG0642 # Protein_GI_number: 15614576 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Bacillus halodurans # 181 689 53 572 585 255 30.0 3e-67 MKKQALFFILGAALILLLPVYSVLQHVVSIERNPDAVRGVLDLRAWNFADKGTVRLSGEW EFYRGKLLVPGDFHPSAETGRTPPVPTGMAQIPGKWNAYMGTEEDSAAEGYATFRLKVRL NETDGALYGIRTGNIRMANRVFVNGREVGASGTPGRTAAEESPDNVPYTGFSYLQGSEAE IVVQISNHSYSSGGMFTPILFGDEKSVMKSREAALFSEWMTMAGFLIPGLYFLVLYRMRR KDPASLYLGLFCLVGLLFVLTHGEKLLAAAWPGFSYTWLLKVQLMVSSFVYFFLLRYVAV AVPGGVHPLAMRLSSAVTVTGLLAGLLLPPVVFSRLEVLILAVSFLSMCYIAFVLLRDVR KRSEDTLLMIAGVMSILMVIAAYVLNLVGLYEGLLLIPAEMLLFVMTQAVLLAQRFNRTF VEVDQLSRRLLSLDGLKDEFMANTSHELRTPLHGMVNMAQSMLEGASGALNDKQRNDLAM IVSTGRRLTLLINDILDFSKLKNGEIVLKRQPVDLKAATNAVLEVMTHVARHKDIRFEQE WPDRLPWLLTDEDRLQQILYNLIGNAVKFTPAGTVTIGAVTKSGHVLIFVKDTGIGIAEN RMEEIFHAYDQGVGPGDRDYEGTGLGLSITKKLVELGEGKIEAESRLGEGSVFRFTVPST TAAPEAARSSDAGFRASAARDETAAAVLPEGREDRRARQIDATVLLVDDDPVNLQVLYNL LSVEGYRLIAVDGGAKAMAHIGSGQSIDLVIADWMMPGMSGLELCRAIRARLSLAELPVL LLTARSLPEDVRTGFQAGANDFLRKPVDADELRARVRTLLEMRKSVRNAVSAEMAFLQAQ IKPHFLYNALNTIIALLPSDPDKTTKLLLELSRYLRGSFDFQNRDQLVPLQKEMALVQSY LVLEKARFEERLQVTYDIRSEPNRLIPPLSIQPIVENAVRHGIMRRAEGGTIGISVEEKE DVLLVEITDNGVGMEPGRAASLLSAEAGGGVGLINIHTRLLTMFGEGLDIRTEAGRGTIV RFRVPNNGGTRGNAGGGQKQ >gi|333605086|gb|AFDH01000097.1| GENE 54 72910 - 74094 1394 394 aa, chain - ## HITS:1 COG:BH2029 KEGG:ns NR:ns ## COG: BH2029 COG0183 # Protein_GI_number: 15614592 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA acetyltransferase # Organism: Bacillus halodurans # 1 393 1 393 394 463 63.0 1e-130 MTREAVIVSAVRTAIGSFQGSLAGVPATELGSIVIRGALERAGVEQERVHEVIMGNVLQA GLGQNPARQAWLKSGFSDGVPALTVNKVCGSGLKAVMLAAQSVMLGDADIAVAGGMENMS AAPYLLEGARSGLRMGDGKLVDSMIRDGLWCAMCDIHMGETAENVADRYGLSREEQDEFA AHSQQKAEQAAAAGRFRSEIVPVPVSRKKQDPLPFDRDEFPRAGTTAETLSRLRPAFRSG GTVTAGNASGINDGAAAVVVMSAEEAGRRGLKPLARIKGYASAALDPAVMGLGPVSAVRR LLNRTGVPIDGIDLFEFNEAFAAQSLAVGRELGVPPEKLNVNGGAIALGHPIGASGARVL VTLLHELERRGGKRGLASLCIGGGQGVALLVERD >gi|333605086|gb|AFDH01000097.1| GENE 55 74101 - 74775 843 224 aa, chain - ## HITS:1 COG:BS_yxjE KEGG:ns NR:ns ## COG: BS_yxjE COG2057 # Protein_GI_number: 16080949 # Func_class: I Lipid transport and metabolism # Function: Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit # Organism: Bacillus subtilis # 1 209 1 209 216 306 77.0 3e-83 MSHPRQRIVERAVREIRDGMYVNLGIGMPTLVADEIPAGITVMLQSENGLLGIGPYPKRG EEDPDLINAGKETVTAVPGASYFDSAESFAMIRGGHIDLAILGGMEVSGEGDLANWMIPG KMVKGMGGAMDLVSGAKRIVVIMEHVNKYGESKVKKACTLPLTGRGVVDRLITDLAVFDF TPEGMVLAELLGEAELDEVRAKTEAAFTLGPLLKERLEACGQEG >gi|333605086|gb|AFDH01000097.1| GENE 56 74772 - 75482 972 236 aa, chain - ## HITS:1 COG:BS_yxjD KEGG:ns NR:ns ## COG: BS_yxjD COG1788 # Protein_GI_number: 16080950 # Func_class: I Lipid transport and metabolism # Function: Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit # Organism: Bacillus subtilis # 1 231 1 231 238 349 77.0 2e-96 MSKVLKSAEEAVRVIGEGATLIVGGFGLCGIPEHLIAALQRQGTGELTVVSNNCGVDDWG LGLLLANKQIKKMVSSYVGENKTFEKQYLSGELEVELVPQGTLAERIRAGGAGIPAFYTA TGVGTLVAEGKEEKHFGGRPYILEKAITGDFALVKAWKADTAGNLVFRKTSRNFNPLAAA AGKITLAEAEEIVEAGELDPDDIHTPGIFVQHVVQGGSYQKRIERLTVREAKEETA >gi|333605086|gb|AFDH01000097.1| GENE 57 75520 - 76305 972 261 aa, chain - ## HITS:1 COG:SPy1640 KEGG:ns NR:ns ## COG: SPy1640 COG1028 # Protein_GI_number: 15675513 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Streptococcus pyogenes M1 GAS # 8 261 6 259 259 340 67.0 1e-93 MTPFLAHKTALITGAASGIGLEIARTFAREGAKVVISDIQEEKAKAAARRLADEGYEAIG LACNVTDESQFAGAIRTTHETYGRFDILVNNAGLQHVAPIEEFPVEKFEFMIKVMLTGAF IGIKHALPIMKEQQYGRIINMASINGVIGFAGKAAYNSAKHGLIGLTKVAALESAAHGIT VNALCPGYVDTPLVRGQLEDLARTRGVPLESVLEEVIYPLVPQKRLLSVDEIAEFAMLIA SDKLKGVTGTSMLIDGGYTAQ >gi|333605086|gb|AFDH01000097.1| GENE 58 76448 - 77830 1866 460 aa, chain - ## HITS:1 COG:FN0815 KEGG:ns NR:ns ## COG: FN0815 COG2610 # Protein_GI_number: 19704150 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism # Function: H+/gluconate symporter and related permeases # Organism: Fusobacterium nucleatum # 17 451 1 436 447 393 51.0 1e-109 MVFVQVVAIVLALGLLMFFAYRGYPVIVFAPIFTLLAVVISGLALMPSYTETYMANAANY IKTYFPIFLLGAIFGKVMELNGAASSIARSIVKVLGSKRAMLSVVLACAVLTYGGVSLFV VAFAVYPFAVAVFREADIPKRLIPGTIALGAFTFTMDALPGTPQVQNIIPTTYFGTDAYA APVVGIVGGIMVLAAGMFWLERRRKQAAAAGEGYGTGHKNEPETAEGQRYPNLWVSLIPL VLVLVFNYLLSRGFLTVNTWYSPELLKTFNIANVKTVASSWALIIALFIGIAAALCINVR HVQSKLAAGLTAAAMGSLLAIFNTASEVGFGNVVKTLPGFKAIQNFILNISSQPLINEAV SVNILSGVTGSASGGLSIALEVMGKQYLAAGQAAGISPEWLHRIASMASGGMDTLPHNGA VITLLAITGLTHRQSYKDIFAITVVKTLTVLILAAVLSFL >gi|333605086|gb|AFDH01000097.1| GENE 59 78038 - 78922 292 294 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|30995401|ref|NP_438934.2| transcriptional regulator [Haemophilus influenzae Rd KW20] # 1 267 2 272 301 117 27 3e-25 MDVRNLASVLEVAKQQNFTKAAEILHMTQPTLSKLVKSMEDELGVTLFDRSGKTVKLTDS GIAAIQRMQVIIQSVNDLYTTLDDVSQLKTGTIRIGLPPVISTVFFPRVIAPFQRKYPAI QFVMIEEGAKTVEQRVLDGSIDMGVVISPDEDSSLGRLPFIRQHVSLVLHRAHPLAERET VSLADLSREPFLLFAKGFAVRHHVLDACHSAGFHPAIAHESSQWDLLVEMVAGGLGVSFI PEPITSKIANPDVRVIPKTSPGVPWNLYVLWNKERYISYAMRELLEFIGEKAEV >gi|333605086|gb|AFDH01000097.1| GENE 60 79079 - 79462 394 127 aa, chain - ## HITS:1 COG:CAC2218 KEGG:ns NR:ns ## COG: CAC2218 COG0784 # Protein_GI_number: 15895486 # Func_class: T Signal transduction mechanisms # Function: FOG: CheY-like receiver # Organism: Clostridium acetobutylicum # 3 115 4 116 119 135 61.0 1e-32 MNVLVVDDAAFMRTLVRMFLEQMGHTVIGEAQNGKEAVDLYGRLKPDLVTMDITMPEMDG LEAVKRIKSANPGAKIIMCSAMGQQRVVMEAIRSGASDFVVKPIQKERLQEAVEKLFAGQ GTKVGVL >gi|333605086|gb|AFDH01000097.1| GENE 61 79698 - 80513 542 271 aa, chain - ## HITS:1 COG:no KEGG:BCQ_2528 NR:ns ## KEGG: BCQ_2528 # Name: not_defined # Def: acetyltransferase, GNAT family # Organism: B.cereus_Q1 # Pathway: not_defined # 10 271 5 266 266 270 48.0 7e-71 MNTAQGQSARLIRDNFIAKAAYFAGRAEGYTLKQTSEYIRADCGLPSDTFNVAVLLQPRL SAENEAILEETVHYFTDKKYPMALWSWESKDSVTFETLRQAGLKEAETNIAMYADLDALH PITECPAEFRVKEIASPAEAEQFGDVLASLFGESEEGANVKAFYRKISRLPLWGASLMKL YIGLYRGRPVSTGTLVFTDDSVGIYDIATLSDFRGQGFGSAMFRFLIGEAKKGKPRLCVL QASPDGIGIYKRAGFEPACEVTVYENRHLVE >gi|333605086|gb|AFDH01000097.1| GENE 62 80975 - 87175 4621 2066 aa, chain + ## HITS:1 COG:BH2080 KEGG:ns NR:ns ## COG: BH2080 COG1404 # Protein_GI_number: 15614643 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Subtilisin-like serine proteases # Organism: Bacillus halodurans # 928 1135 859 1048 1052 66 30.0 6e-10 MSNRLRKIWGTTVLIGGILAGWCQTANAAVMMEALPASADLPSDLAGVSASGVLNGSILV TGGQYSRNNSFAKNSYTFSPSTQTWSTYAPALNLAYHTQSEMKDGRVIITGGNAFLSGTG YVYNNLTRIYSPYTNAWTQASNLPKNMLGNSQSTLPDGRIVSVGGADSIFSPGSSTLYNN TYIYDPAANTWTEKAPLPIGIYGAAQSTLADGRILLTGGLSGYVYSFASYIYDPAADTWT KAAGLPYQYNDLFFRHAQVTLPNGKVLVMGNYNFYLYDPISNTWAQDTPSLKRLQNAKMS LTGGSVYVMGGYDENYGLNTTVYKLSFDFTAPTAPVITTSSADWSLADVTATLTAGTDAD SGVKQTEYSLSGVTVLDWTPYANGDVITVSNSGETTISARTIDKAGNASSVTTAVVKVDK TAPTAPVIKGASSAWTNQNASITLTPGTDKGGSGVQRSEYKLSGGTTQDWAPYTGAVPIG TEGITTVHARTIDNVGNVSAESTADVSIDKAPPTTPSVQPAVSGWSKDNVAVTITPGTDA RSGVKRTEYSLSGASTLGWTAYTGPVTVSAEGQTTVSARSVDEAGNISQLATASVSIDKT APGAATVTPAFTSWTASGVQVTVKPGTDAGSGVYRTEYSLSGATTLSWVTYTGPVTVTAE GITTVHARVIDQAGNISTITTADVKIDRTAPGAPSISPAGTSWVSSDVLVTLTGGDSVSG LNRLEYSLSGAVTSGWKTYTGPVTVTAEGQTTLTARSFDNAGNVSQTATAVMRIDKTAPT VPAVTPGTTGWTAAASVPVTVNAGTDTGGSGVKITEYSLSGAVTKGWTAYTGPLTVTAPG QTTVIARTTDGAGNVSGEGTATVSIDRTPPAAPGITPSETGWTSASGVSVAITHGADTGG AGVSRTEFSLSGAETLGWTAYIGPLSVKAEGQTTVTARTVDKAGNVSLVSSIVVKIDRTP PGAPAITAPADQALLRNISVITGTAEPSSFVVLTIDGKAYPAVQADTAGKFTYTLPAQLA DGTHTVTAAASDAAGNTSPASGTVSFTLDTAAPAVPVILFPVDGTLTKDAKPVISGTAEA RSFVHIYMDGSLKADVQADSAGIWNYAGADSLKDGMHTVRVYASDKAGNNSPSTKAVTWT VDATPPPAPVVLTPADGSSTNRNQPVISGTSEPGSLVRVELDGTTSAGSATADGTGKWSL TSAAPLADGTHSLRTWAEDKAGNAGPYSGLLRFTVDTQAPAAPVILKPLADALLNTKTPK VEGHAEAGAFISVVLDGSIIHTVTSGPDGSWVYIPASALADGSHTVKASAADAAGNRSAY SAETTFRIDATAPAAPVITEPAPGTVTNVNRPLIRGTAEASVTVNVYVDGTHSGITTTGT GDSWSFSPGAALSAGTHRLTAIAVDAAGNESPLSPETAFTVVSSNAALHSLSLGGAALNE TVTGSTYRYTAQVPHSVTVTSIQATAEDAQAAVRLLKNGQPVTNPVALEVGDQTFTVEIT AQDGVTVTPYTVTVTRAASSEVTLSELTVTSGELTPRFDGATTVYSTTVTNDVYAVTVGA KASSSVATVTINGTAFGGNAGSLPLQLKVGSNPVTVTVTAQDGVTTQSYQLEVSRAPSSN VLLSGLILSEGSLEPAFDSGMVHYRSAVSPETASLSVTASVYEPNATLVVNGLSVVSGLP SVPLALKPGVNPITVVVTAQDGITTQSYVVDVTRQLSSNAGLTGLELSAGRLSPAFDGDT SNYALTVDYENDRTTVTASVYDPDALVTVNGVPLLSGKPSAPLALRVGANPVQVTVTAPD RQTVRTYDVLITRQSRQDSGGDSPGTSPGGTPPTEEPKPPVDPGQPQHPGEPGDTGKPGD PGIPGLPEVPGGLSCPSPPPHPVAFKDMQGHWAEKEVASAADCGIVSGFENGTFRPQEQV TRAQFTVMLTQAYAEALRQPEKPAPASGFADSASIPAWAAEAVALAQRAGIATGYGDGTF RPDAPVTRAEMLTLAAKAAQLQPVPVGALHELYADADEIPGWAAGYVAAAQQKGLVQGRG PRTFDPLGYTTRAEAVALLLRMLESK >gi|333605086|gb|AFDH01000097.1| GENE 63 87610 - 88872 926 420 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKKNAALGTLIIMSLLIAIGVLGYQLYQKSQGLKASVKPAASNPPVEAQTPAQAGGKQEE QASLVLAFEQALYAAERSAGEAKKEADREIGKMNQNVMPDSAVILKAYDQFSNVAEKVRK IPVPAGLNPAMTTELEAAKEKYAQAYDHKAQGMYSLMDYINTTKAGSAVTYGDHIKQADA LLFDSVGTVIAMQQKLGVDFSKKETPAQKTQTAAQEPVSSPSAGSSEASSSKDGSASAKP ASPSTDKSTSSPAAAAKPVPSPSAAPKPSQAPSSAAPAAQAQEPLSIAGMKKGYFGGIEF GLGTDFKDVVAKWGKVKQDQHREGGAGYLYKPCNCSIFVGKQNKISAIELNTPMTLQKVI DRLGKPWQEGWDPMDDSYMLVYQFSGNKELYVETQVTTDNPDAPPPPRSAKTARISLIQK >gi|333605086|gb|AFDH01000097.1| GENE 64 89194 - 89277 81 27 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MDNQYKTKVERIIGIKVSLDLEVLLFL >gi|333605086|gb|AFDH01000097.1| GENE 65 89445 - 89897 220 150 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKRILLIFMCFSLTGLNLIGCSSGKDPIDVGEILFLSTVATIEQDANYNNQFTGVSYSKE TLEAISETERKKLFERVAQRYNASVQQLPEDFIYGRNDLALGIRLSKTTSDKVTVNSTKR MGTGISYTIELVKNEDTWKVEKVTKTSTGK >gi|333605086|gb|AFDH01000097.1| GENE 66 90324 - 90527 89 67 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKIIRKLFLTLTVIFMLLREEITLMMLYVKDETTFWGLSLSNASIYSHVFALAAILCLIG FLRSKPD >gi|333605086|gb|AFDH01000097.1| GENE 67 90728 - 91528 621 266 aa, chain + ## HITS:1 COG:lin0348 KEGG:ns NR:ns ## COG: lin0348 COG3568 # Protein_GI_number: 16799425 # Func_class: R General function prediction only # Function: Metal-dependent hydrolase # Organism: Listeria innocua # 7 262 2 254 257 134 31.0 2e-31 MTNSKNLTAMTFNLRVNVLSDGSNAWPHREHLAADAILRSNAHLVGTQEGTAAMLEDLDV RLPGYSRIGNGRLGEAEAKLHNDEYCAIYYQHEALTLIKHGQFWLSETPDEQGSLGWDSS YPRICTWGCFESKEHPGSRFYAFNTHFDHLGQMAREESAKLLLERIRACREEENAPALLM GDLNAEPDNRAIGLLREQLQDAYTLLEEPVGRTFHDFEGGTDGEPIDYIFATQDIERIRT TVDREQRGGAYPSDHYPVALILGVEG >gi|333605086|gb|AFDH01000097.1| GENE 68 91758 - 94919 2180 1053 aa, chain - ## HITS:1 COG:no KEGG:Tery_4497 NR:ns ## KEGG: Tery_4497 # Name: not_defined # Def: Na-Ca exchanger/integrin-beta4 # Organism: T.erythraeum # Pathway: not_defined # 39 499 201 660 1222 260 37.0 2e-67 MVRSVKKGQAQKWLALVLGASLVAVPVGPVKANAANPVFENAVAYEVGGWAYDVTTGDVN GDGLDDLVSLNFQNDQVAVLLGRGDGTFGAPASFAVGSNPRAVAIADLDGDHRPDLAVAN FMDNTVSILKGNGDGTFRTWGSVAGVGPEASGIAAADLNGDGFPDLAVVNNVSGSVSILF NIGGSGNFVPGASIPVGAYPRSLAAWDMDGDGKTDLAVANSGSNTVSILKNDGTGTQFSR VDYAAGSSPNRMKAADLNGDGLKDLVFAANGDHGIAVLLGSAGGGFGQAVVYPAGNYPLK VALGDFDGDGHLDILGQTQAQDFAVLMGNGDGTFRSPISYPYPPYAFYLETGEFNGDGRS DIVLASSTSSHTSIYVMNSKAEGTFSLASDTSETAENGGTANVTIKRAGSSTGQTSVRIR TTDGTAVAGKDYAVVDEVVVLQDGETSRNYPITVMDNQVYEGDKTFTVKLSNPANGYVIG SPDEAVVTIREDEAVPDTTPPVVDVAKFGVMDNYAGTPDRLYGAAGAVGEAGAIVKAYPW TDTDKDGIVGAGELGTAVALGTSSADGSVPAADIGDLAPGSYVYVITATDAAGNESAKDA GAALTVTLTKGVSPDAEAPVWPAGGVLALSSVTSSSVNVGWPEAADNRAVTGYELYRNGA LLTTVSADTYSYRATGLTGDTLYSFAVKAKDEAGNGSTELAGTVRTLAVPASGGSSGSSP SLSAESRLQELRFTAGEKEAALTPGFQPGVSDYAAESETDRGVIRYKTMDSAARAAVNGQ NVGSASGEYAASLSEGVNVFKIAVQAEDGSTREYKLKVTRKAAGQGGAGPGTKPDSGSGT GTGTPPDPGTKPDPGAEPGAGGGSRFADISGHWAEADIGRAVVLGLVDGYEDGTFHPDAT INRAEWIVMLERLLKDAETAGKTSTDAAAKTPLPFADGGAIPAWAVRAVADAAANGIVSG YDDGTFRPGASVTRAELAVMLAKAVNGSAAGGGKAAAFADEADIPAWARPYVQMSAERGL IDGRSGNRFAPNEKATRAEAAVLLVRLAKLLSS >gi|333605086|gb|AFDH01000097.1| GENE 69 95213 - 96298 701 361 aa, chain + ## HITS:1 COG:CAC2383 KEGG:ns NR:ns ## COG: CAC2383 COG0726 # Protein_GI_number: 15895649 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted xylanase/chitin deacetylase # Organism: Clostridium acetobutylicum # 17 200 59 240 255 93 30.0 5e-19 MTNSVITRGNPAVSHCAFTFDDGPMRIPVDAWLDALEQGGARGTFFLTGEWFDRYPAKAR EMLARGHELTTHTYHHRRMADVTKAVFFEELKLAELSYQEATGRPVPTFMRFPYASYREE NLEWLREWNYLVVEGEDTVDWSGPPSAQLVERVIPKLVNGSIFMFHANEIAKETPQAVKS LVHHTHAKGLAVVPVSELLHADGIRAGERSWQVRFKPTLQGSFHSEQWKRVAGEDELRKL AADSLEWGNPKAPTGPGAYSKWLQTLSMQVQSDDETRFVVRSFAGQHWAYARASVRGGAL VLEDFATKEAHADALVYVLQWAAHEASTLGCEWITSTQDMRRIHKLCEQLGFEAEIVWQE G >gi|333605086|gb|AFDH01000097.1| GENE 70 96519 - 100223 1540 1234 aa, chain - ## HITS:1 COG:BS_ppsA_2 KEGG:ns NR:ns ## COG: BS_ppsA_2 COG1020 # Protein_GI_number: 16078895 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Non-ribosomal peptide synthetase modules and related proteins # Organism: Bacillus subtilis # 11 688 389 1059 1516 533 42.0 1e-151 EEQGDELLFRLEYCDALYERETAERMAGHFVQLIDAALADPQAKLSALSMLTPEERSGLL DHFANAGLEAGRGMAGVFHEAFTAQAARIPAQTAVVYRDERLSYRELDERSNRLARKLQA CGVGRETLVGILAGRSPLLLVAVLAVWKAGGAYVPLDPDYPPERIRFMLEDSGASVLLTE AALEPRLEVILADNEAGTAVLALDDEAIYDDQGSAVAVINRPGDLAYLIYTSGTTGRPKG VMIEHQSLMNTAEGYRREYRLDQFPVRLLQLASFSFDVFVGDLARTLYNGGMMVICPKDD RLDPTRLHHWIQAYDVNVFESTPALIVPFMQYVTDRGLDIGAMKLLITSSDSCNVADYRA LQERFGAQIRIINAYGVTEAAIDSSYYDQPLKRLPDAGHVPIGRPLLNARFYILDSQLRP VPVGVLGELCIGGAGVARGYWNRPDLTGEKFVPNPFVPGERLYRTGDSARWLPDGDVDFI GRLDDQVKIRGHRIELGEVEARLMKQSFILEAVVAGKESIHGQKQLCAYIVANRIISPGE LRKELAEELPDYMIPSAWVQLDRLPLTPNGKVDRKALPAPNREENPDAAYAAPHTKLQQT LTELWQKLLGAETIGIDDNFFERGGHSLTAIQLIAQAQTAGIPIGIHHIFQGQTIRKLSA LLEQPAEVNIQPAETVQESERRLKKAFGLRSRFVTEESEDGLRVTLNMEPCHGVKVSELL AFIRAELASNLHPHYLTTGESAADSVAEGRDAAIEQLVPLAISEKSPAEIKRRVKRELSR IQVLHEALQSDIIVGAVECRYALAPAQEYHLERPQCSGTVIRLDVLGLDADLLSEAVRSL LARHSLLRSVLVRDGQDWVWEQRAVPEQLTLPAVDLSDYSKADQQELLVRLLPKLFTEPY RLSGRLLYRMALVRLNWREHRLLLPCSHLIYDETSGSILESELLEAYRRLASRSEEDLTA WPQLRTSGAEAGTAGMPADGYPAYVAQVRKGPQHIGDHELVRLFHLEDFDAGLELVNESI QALLGQGYTKAELRFDMSGFKELASVNWGVWSLQLAGRFFRRYLQVAAVPVWMTHYGRHY ENNAFFKTVGECIDQIPLLLTGTEADSESVRDKLQTAAARNINFLNLVYNEQTASNYPKS RRLLQKGLDSTAIVYNYLGESEDAAYLFEEAEAAGGESHAQQPPVLHFTSQHQGSVWQIS VTLPYREEKETIMEMLEKELQTLAASLRSVKAHV Prediction of potential genes in microbial genomes Time: Sun Jul 17 09:53:30 2011 Seq name: gi|333605078|gb|AFDH01000098.1| Paenibacillus sp. HGF7 contig00124, whole genome shotgun sequence Length of sequence - 7964 bp Number of predicted genes - 7, with homology - 7 Number of transcription units - 6, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 3 - 495 366 ## COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes 2 1 Op 2 . - CDS 523 - 2013 852 ## COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs - Prom 2130 - 2189 5.4 + Prom 2982 - 3041 1.6 3 2 Tu 1 . + CDS 3197 - 3682 263 ## COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs 4 3 Tu 1 . - CDS 3679 - 4422 575 ## COG0325 Predicted enzyme with a TIM-barrel fold - Prom 4458 - 4517 2.5 5 4 Tu 1 . - CDS 4526 - 5062 147 ## COG3467 Predicted flavin-nucleotide-binding protein - Prom 5212 - 5271 4.3 - Term 5244 - 5279 3.1 6 5 Tu 1 . - CDS 5365 - 6714 862 ## COG2312 Erythromycin esterase homolog - Prom 6736 - 6795 5.1 + Prom 6757 - 6816 6.3 7 6 Tu 1 . + CDS 7053 - 7928 437 ## BCB4264_A3225 CAAX amino protease family Predicted protein(s) >gi|333605078|gb|AFDH01000098.1| GENE 1 3 - 495 366 164 aa, chain - ## HITS:1 COG:FN1454 KEGG:ns NR:ns ## COG: FN1454 COG1181 # Protein_GI_number: 19704786 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanine-D-alanine ligase and related ATP-grasp enzymes # Organism: Fusobacterium nucleatum # 1 163 1 153 287 117 40.0 6e-27 MKIGVIMGGISSEREVSLQTGQEMIRHLDRSRYEVVPIVIDQRADLIAQAQQADIDLALL ALHGQYGEDGTVQGVLETLGIPYTGSGVLASSLCMNKELSKKLLKAVGVHTPEGLCWQGM KDYKPQAVKRLGYPVIVKPNMGGSSIGIQLVHKEKELLPAVQQA >gi|333605078|gb|AFDH01000098.1| GENE 2 523 - 2013 852 496 aa, chain - ## HITS:1 COG:CAC3651 KEGG:ns NR:ns ## COG: CAC3651 COG1167 # Protein_GI_number: 15896884 # Func_class: K Transcription; E Amino acid transport and metabolism # Function: Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs # Organism: Clostridium acetobutylicum # 1 488 1 473 481 442 46.0 1e-124 MFQDFKLVGDRPVALQVKEYIKRLIIKGALQADQKLPSTREMSGLLKVSRNTVIAAYEGL EDDGFRYAIPGKGSYVAATGGHLTADPGGADGSAAWQIDWKARMNEYAVSAVELDRMKQG IRAQKGVISFTSIAPDEQLFDLGDVRRAFMDRMAIEGQVLLNYGYAKGYKPLIDYLIRYM ENKGIDISGKDMLITSGFTEGFDIVLSALRPSARRGAAICENPTHHTAIKNLKLQGFEIT GIPMERDGIDVKQLEKVLQNQTNSFDLAYLTPSYHNPTGIVMSPAKRSAVIKLMTRYQIP VIEDGFNEELRYSGAHVAPLIATAGQGNGVIYIGSLSKVLFPGLRVGWVLGDRSLINNLE SIKRARTIHTSTIDQSILYQYLLNGNFDKYIKKARMEYKRKYELTKACCEAHLPEAQLSG DGGLHLFLTFPSSVDTRQLLEACTEQGVIFTPGDKFFIQEGEGTNTLRLGFSRVTDENIE RGIQIIGQEARSFLQA >gi|333605078|gb|AFDH01000098.1| GENE 3 3197 - 3682 263 161 aa, chain + ## HITS:1 COG:YPO2845 KEGG:ns NR:ns ## COG: YPO2845 COG1167 # Protein_GI_number: 16123040 # Func_class: K Transcription; E Amino acid transport and metabolism # Function: Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs # Organism: Yersinia pestis # 4 143 342 481 501 85 36.0 4e-17 MVAPGIRISAIIGPKEAIRQLARVHELTYRHLPIMEQITLTHFIEHGHFMRHMRRVRNIY RRRHEAMTKAIIATGLSEHFTLSGVETGLHMLLEANQSFDEEAVTNLALEKGIRVYPLSA YCLESDRKGWVLGFAKVDEAAIEEGIYRLAGILLSYKHPRP >gi|333605078|gb|AFDH01000098.1| GENE 4 3679 - 4422 575 247 aa, chain - ## HITS:1 COG:BS_ylmE KEGG:ns NR:ns ## COG: BS_ylmE COG0325 # Protein_GI_number: 16078602 # Func_class: R General function prediction only # Function: Predicted enzyme with a TIM-barrel fold # Organism: Bacillus subtilis # 5 229 3 222 230 170 41.0 3e-42 MGHLVEENLKIVRQQMELACQASGRKLEDVKLLLATKTVPLDKLQMAIQAGEALFGENKA QELRDKFPLMQQYNQVEWHFIGHLQTNKVKDVVKYVTFIHSVDRLKLGQALHNQLVKENK TMDILVQINTSYEESKFGARPEEALELVEQLSQFETLSVKGLMTIGKLNAANDETRHCFR LLKSIQSQIREKKIPRVEMDILSMGMSSDFRVAIEEGATIIRVGTSVFGQRYLPDGYYWN ENAHRDD >gi|333605078|gb|AFDH01000098.1| GENE 5 4526 - 5062 147 178 aa, chain - ## HITS:1 COG:MA1206 KEGG:ns NR:ns ## COG: MA1206 COG3467 # Protein_GI_number: 20090070 # Func_class: R General function prediction only # Function: Predicted flavin-nucleotide-binding protein # Organism: Methanosarcina acetivorans str.C2A # 1 172 1 172 177 205 54.0 4e-53 MDRVRYKIREVLDKSKIDTFLLQARIGQLGMVDGHLPYVVPLNFVWTNGKLYFHGATGGR RNQVMGANPEVCFTVCEEYGTITDPVPAKTDTAYMSVMIFGKAQPIVDLDEATHMLQEMM HKYVPGYYNRPLPRQHVDKYRSAVFGGPVQVYRIDPHHITAKENAVEEEKMFKPGKTV >gi|333605078|gb|AFDH01000098.1| GENE 6 5365 - 6714 862 449 aa, chain - ## HITS:1 COG:VNG1811G KEGG:ns NR:ns ## COG: VNG1811G COG2312 # Protein_GI_number: 15790722 # Func_class: R General function prediction only # Function: Erythromycin esterase homolog # Organism: Halobacterium sp. NRC-1 # 42 444 12 427 434 136 25.0 1e-31 MKKKMMYGGMVAVVSAALLVGGCAKEGETKTVVVTQSTEPVQNDMISSIKSQAKPLKTID PMQPFDDLQPLKNMIGDARYVGLGESTHGSSEIFTMKFRLVKYLVTELGFTNFGMEEDWG SGLKLNEYIQTGKGNPREFLNLLYPTDEIVAMLEWMKEYNADPANKKKIQFIGLDIKSLD SGVYQKVTDYVKRHYPDMLAEVELSYKELQLSTGNLQDYMKLSPEVRERFKVNAEKVVRL LEEKTKQADKEKDAAELVWVKGTAMAIRNFTTMLIPDDYPSMIKLHEQYMADHAVWAGEA LDGKTMVWGHNIHVAKGIIDKQLYPDGSGNFLKKRLGDQYIVMGSTTSEGDFTLYSEYRP DGTGKLGTEKIPQDVNSSNYMLGKVSPEMFLLDARHLEGPAKQWVGEKRPLLSLGGQLIP NAPVYFDASLLEQFDILFHIRKTSPSHMK >gi|333605078|gb|AFDH01000098.1| GENE 7 7053 - 7928 437 291 aa, chain + ## HITS:1 COG:no KEGG:BCB4264_A3225 NR:ns ## KEGG: BCB4264_A3225 # Name: not_defined # Def: CAAX amino protease family # Organism: B.cereus_B4264 # Pathway: not_defined # 1 270 19 288 310 361 70.0 3e-98 MISNAAALSTKEQVHRARKGLLLFLGILLVFSIIMNIAVILTKSIPLIIVYMFTPALSSI LARILLREGFKDVSFNLGSTGIWRGIGLAVLIPMIICFITYSIAWFSGLAIFQLPVGGTL EPVFHILGLQHLPTPLNFILIVVVTGILGSLINLIPVMGEEVGWRGYMLTRLVDAKVPRP ILVSGLIWATWHVPIVIAGLYVAGPSVILTVAGLYLCIVPFGYIIAYLRLATGSVWPAVI IHSVWNAVVQGPFARATTGNHTEIWIGETGMITAFIIFIAAIFVSRRKLLK Prediction of potential genes in microbial genomes Time: Sun Jul 17 09:53:40 2011 Seq name: gi|333605065|gb|AFDH01000099.1| Paenibacillus sp. HGF7 contig00015, whole genome shotgun sequence Length of sequence - 9269 bp Number of predicted genes - 10, with homology - 10 Number of transcription units - 6, operones - 2 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 298 - 322 -1.0 1 1 Op 1 8/0.000 - CDS 470 - 1237 915 ## COG1540 Uncharacterized proteins, homologs of lactam utilization protein B 2 1 Op 2 21/0.000 - CDS 1241 - 2257 817 ## COG1984 Allophanate hydrolase subunit 2 3 1 Op 3 . - CDS 2254 - 3075 483 ## COG2049 Allophanate hydrolase subunit 1 - Prom 3193 - 3252 3.1 - Term 3118 - 3165 4.2 4 2 Tu 1 . - CDS 3291 - 3905 672 ## COG2337 Growth inhibitor - Prom 4119 - 4178 4.8 + Prom 3982 - 4041 3.1 5 3 Tu 1 . + CDS 4116 - 4709 606 ## COG0398 Uncharacterized conserved protein + Term 4753 - 4787 2.8 - Term 4776 - 4806 0.2 6 4 Tu 1 . - CDS 4966 - 6306 1353 ## GYMC10_0507 hypothetical protein - Prom 6393 - 6452 7.5 + Prom 6410 - 6469 6.6 7 5 Tu 1 . + CDS 6537 - 6782 355 ## gi|167464266|ref|ZP_02329355.1| hypothetical protein Plarl_17194 + Term 6794 - 6831 8.0 + Prom 6903 - 6962 4.9 8 6 Op 1 19/0.000 + CDS 7008 - 7844 832 ## COG4585 Signal transduction histidine kinase 9 6 Op 2 . + CDS 7807 - 8475 674 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 10 6 Op 3 . + CDS 8569 - 9213 756 ## COG4549 Uncharacterized protein conserved in bacteria Predicted protein(s) >gi|333605065|gb|AFDH01000099.1| GENE 1 470 - 1237 915 255 aa, chain - ## HITS:1 COG:BH1821 KEGG:ns NR:ns ## COG: BH1821 COG1540 # Protein_GI_number: 15614384 # Func_class: R General function prediction only # Function: Uncharacterized proteins, homologs of lactam utilization protein B # Organism: Bacillus halodurans # 1 249 1 248 257 247 48.0 1e-65 MVSIDLNCDMGESYGAYRFGRDEELLESISSANIACGFHAGDPGVMRRTVALCLEKGVAV GAHPGLPDLAGFGRREMAVGAEEVYELTLYQLGALQAFVQAEGGNLRHVKPHGALYHMAT ARGDLADAVARAALRVSGGALVLLGPPGSELLRAGKAHGLRTAAEAFADRTYRPDGTLTP RTEPGALLSDPAQAAAQVLRLVRDGAVTGARGETVPLTAETVCVHGDGPHAAVIARSVRA ALDEAGVAVRPPWSA >gi|333605065|gb|AFDH01000099.1| GENE 2 1241 - 2257 817 338 aa, chain - ## HITS:1 COG:BH1818 KEGG:ns NR:ns ## COG: BH1818 COG1984 # Protein_GI_number: 15614381 # Func_class: E Amino acid transport and metabolism # Function: Allophanate hydrolase subunit 2 # Organism: Bacillus halodurans # 8 332 6 326 331 244 41.0 2e-64 MSLLVENPGLYTTVQDTGRFGFRRFGFVSGGAMDVLSMQAANILTGNPRHAAVLEWTLQG PRLLLRQDTLAAWCGPEFAVYAGGTPVPGWRPVYIRAGTTLTLGSGRNGCRGYLALAGGV DVPLALGSRSTYTRAGLGGLEGRPLQAGDELLPGRPSPAAERMMAELRLQASAEDIDVRA TAWEASWAVRPGGTAGNPAVLRVVRGSETGRFKGGLDALTASVYRVQPQSDRMGCRLQGS ALELSVPGELVSESTAPGTIQVPPDGQPIVLAADSQTTGGYPRIGHVISADLPVLGQLAP GASVRFAEVTLHEAQAELMRQEMNLRLLQTGVRARMGR >gi|333605065|gb|AFDH01000099.1| GENE 3 2254 - 3075 483 273 aa, chain - ## HITS:1 COG:BS_ycsJ_1 KEGG:ns NR:ns ## COG: BS_ycsJ_1 COG2049 # Protein_GI_number: 16077476 # Func_class: E Amino acid transport and metabolism # Function: Allophanate hydrolase subunit 1 # Organism: Bacillus subtilis # 12 265 8 241 273 211 45.0 9e-55 MEPKCSSAIVFEPLGDQAVVLRLGESISEEVHRRVLEAAETISRSPFPGLVEIVPTYTTV TVWYSVVEAAVAAGRHFSASELEETEAMLAGGEPVVYTWVRRHLERVLETGAAEHSVLPA SPSREIFIPVCYGGSFGPDLEDAARILGMSPEEVVRLHSGGVYRVYMIGFVPGFPYLGGL PSSLALARRSNPRVAIPAGSVGIGGSQTGIYPLPSPGGWHIIGRTPLDLLRTRENPPVLL QAGDTVRFVPVDEEDYERLCRAETEMAKEGNRR >gi|333605065|gb|AFDH01000099.1| GENE 4 3291 - 3905 672 204 aa, chain - ## HITS:1 COG:CAC0083 KEGG:ns NR:ns ## COG: CAC0083 COG2337 # Protein_GI_number: 15893379 # Func_class: T Signal transduction mechanisms # Function: Growth inhibitor # Organism: Clostridium acetobutylicum # 15 133 55 173 199 80 36.0 2e-15 MANRNHNGGGPLKTDLTRIQDYLEWLKTKIYLDSLSDKAKTRALRRGEVYKCNLGKGIGS EEEKERPCIILQNDVGNKHSGNTIIAPITHTAGIPSVSVELKGNYTYLEAGKEKQLTGYV LLANIMTVSKSRITGSCLANIRGEMDEIEEKVMVSLGMFKKYKDLLDKKERDKAFIKRLL QENYALKEKLDLYERPDSASEIHG >gi|333605065|gb|AFDH01000099.1| GENE 5 4116 - 4709 606 197 aa, chain + ## HITS:1 COG:BS_yhjE KEGG:ns NR:ns ## COG: BS_yhjE COG0398 # Protein_GI_number: 16078112 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 4 195 3 194 207 157 42.0 1e-38 MTWESIKNVLTEENIAQLLSHYNSLGPLPGILLTFIEAFIPVLPLFVIVMGNAASYGLGF GFLYSWLGTSLGATCLFLLFRRLSNTAFMQKLTRSPKLRNGMNWIHNHGFGTIFLLSCFP FTPSSLVVVAAALSRVEKMIFLPAIVAGKAVMVFTMAFVGYDIMSFIRQPWKFLIVLVVI GLLWLLGKKFETRMHRA >gi|333605065|gb|AFDH01000099.1| GENE 6 4966 - 6306 1353 446 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_0507 NR:ns ## KEGG: GYMC10_0507 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 441 2 443 443 436 52.0 1e-120 MEIKRPPSRDEIVIGLIGPEELLDKAEETIKAFPSFHPLSLKWEGEPHRLPDVQRLGEQA EVLLFTDPDTFRLAKQSVAFRIPAHYVPLTGTGLYRALYLAGHTGSPGKLTVDGLTEPVV AKALRELGENGMDVVCYGGQSDGSLQELVDFHRAGASRDTVALTGMKAVAEALTKEGLRS EWIAPTEHDMTISLQRALLSTETRRSKEGQIVIGFINIDGFERLAARSGSEHEVQRMKLD LHRIVLDYVEHLDGYLNTLGGDEFLFMTTRGIFERETGGYKSIPLAKDLSLMHDLTLSIG IGFGRSANEAGTHARLALRRSKDAGGNITFIVREDRSVIGPLEMTEPNRFDLSLLDAELI KEAGRAGMTPAYLSRLVAYVTRFGKLDYTAQELAGVLDVTVRSTHRFLLAWQDAGLVDVI GEERGVSKGRPKQIFRLAFLEERIRS >gi|333605065|gb|AFDH01000099.1| GENE 7 6537 - 6782 355 81 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|167464266|ref|ZP_02329355.1| ## NR: gi|167464266|ref|ZP_02329355.1| hypothetical protein Plarl_17194 [Paenibacillus larvae subsp. larvae BRL-230010] # 1 56 1 56 80 75 64.0 8e-13 MFDILIYQKQKVKVSCGKDTITGVISNHYEQFGLIKMDNVLLPIEHILMIEVVEEEGDPF CYADLPAQSINKGASLREMLY >gi|333605065|gb|AFDH01000099.1| GENE 8 7008 - 7844 832 278 aa, chain + ## HITS:1 COG:BS_yvqE KEGG:ns NR:ns ## COG: BS_yvqE COG4585 # Protein_GI_number: 16080362 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Bacillus subtilis # 60 259 127 340 360 92 28.0 6e-19 MSLKTLKWLAALTPALFIGGFEFIRHEFMLSYMSMETGNWYITFLTLLVSYVFATWMFRS IERTNNRLARETSKRAVYEERERLARELHDNLAQTLFFINVKLKQGKTEEAKAAVSEIDH HLRQAIFNLRTLPEEGTSFTLRIGKWLQDWEVLTGIETVQNLRATDKVLTAAEEVQIFAI IQEAFTNIRKHSRATQASIDLETSGPEWSLKIADNGVGFAEDESQRHRYGLTMMRKRAAE LGASWELQSSPENGTELSVTSSRRKPYVRDLLSRSHRG >gi|333605065|gb|AFDH01000099.1| GENE 9 7807 - 8475 674 222 aa, chain + ## HITS:1 COG:DR0987 KEGG:ns NR:ns ## COG: DR0987 COG2197 # Protein_GI_number: 15806010 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Deinococcus radiodurans # 8 215 28 232 239 157 39.0 2e-38 MSETCYRVLIADDHPLARQAIQSLLEDDSSFTVVGEAYNGEEAIALCGNLQPDVVLMDIH MSPVNGLEATRQIKQRYPHIRIVILTVSDDVADLFTAVQFGAQGYLLKNMDPDEWLNYLH ALLDDNSQVARQMADRLMRRFRQSGTPAASGQPLPQLTAREHEIVLYVAEGYNNRQIAEK LLISENTVKNHMKNIFEKLGMDNRVQLTAYAVKHGMSRKDHN >gi|333605065|gb|AFDH01000099.1| GENE 10 8569 - 9213 756 214 aa, chain + ## HITS:1 COG:BS_ycnI KEGG:ns NR:ns ## COG: BS_ycnI COG4549 # Protein_GI_number: 16077462 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 10 206 12 199 204 137 43.0 1e-32 MNKLKIQAAAVVAGLMLFAGVASAHVTVNPAEATAGSYQKFTVRVPTEKDVPTTKIEVKF PVDAVSISRFEPKPGWKYEIAKDGADKITGVTWTAENGGLTKTEFGEFNMQGKVADNATS IVWKAYQTYQDGSVVEWTGAEGSDKPASVTKVAAKPTGAGTDSHGHTSTAPGSATAAPAQ QAGASASNTPLYLSIAAVVLSAASLLLSLFRKRA Prediction of potential genes in microbial genomes Time: Sun Jul 17 09:54:17 2011 Seq name: gi|333604985|gb|AFDH01000100.1| Paenibacillus sp. HGF7 contig00051, whole genome shotgun sequence Length of sequence - 80305 bp Number of predicted genes - 76, with homology - 63 Number of transcription units - 41, operones - 17 average op.length - 3.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 451 - 510 2.0 1 1 Tu 1 . + CDS 552 - 1073 587 ## COG4843 Uncharacterized protein conserved in bacteria + Prom 1079 - 1138 6.7 2 2 Op 1 24/0.000 + CDS 1171 - 2394 1037 ## COG1125 ABC-type proline/glycine betaine transport systems, ATPase components 3 2 Op 2 13/0.000 + CDS 2395 - 3063 770 ## COG1174 ABC-type proline/glycine betaine transport systems, permease component 4 2 Op 3 13/0.000 + CDS 3156 - 4055 903 ## COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) 5 2 Op 4 . + CDS 4088 - 4717 781 ## COG1174 ABC-type proline/glycine betaine transport systems, permease component + Term 4724 - 4782 7.4 - Term 4915 - 4963 8.4 6 3 Op 1 . - CDS 4976 - 5395 270 ## COG3871 Uncharacterized stress protein (general stress protein 26) - Prom 5436 - 5495 1.9 - Term 5451 - 5490 0.1 7 3 Op 2 . - CDS 5500 - 7113 1316 ## COG1075 Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold - Prom 7158 - 7217 10.5 - TRNA 7544 - 7625 46.8 # Leu GAG 0 0 - TRNA 7643 - 7715 89.5 # Lys TTT 0 0 - TRNA 7719 - 7793 74.2 # Glu TTC 0 0 - TRNA 7990 - 8080 66.6 # Ser GCT 0 0 - TRNA 8086 - 8161 90.8 # Asn GTT 0 0 - Term 7937 - 7975 3.5 8 4 Tu 1 . - CDS 8180 - 8653 274 ## COG3091 Uncharacterized protein conserved in bacteria - Prom 8717 - 8776 3.5 + Prom 8696 - 8755 4.4 9 5 Tu 1 . + CDS 8796 - 9161 484 ## Pjdr2_4970 hypothetical protein + Term 9397 - 9442 8.1 - Term 9385 - 9428 7.7 10 6 Op 1 . - CDS 9453 - 10712 1251 ## COG1472 Beta-glucosidase-related glycosidases - Term 10843 - 10887 6.1 11 6 Op 2 . - CDS 10905 - 13136 2077 ## PROTEIN SUPPORTED gi|51894064|ref|YP_076755.1| ribosomal protein S1-like protein - Prom 13253 - 13312 1.9 - Term 13257 - 13313 8.9 12 7 Op 1 4/0.200 - CDS 13318 - 13668 346 ## COG2337 Growth inhibitor 13 7 Op 2 4/0.200 - CDS 13673 - 13915 236 ## COG0864 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain - Prom 14041 - 14100 4.6 - Term 14029 - 14070 -0.8 14 8 Tu 1 3/0.200 - CDS 14170 - 15369 1163 ## COG0787 Alanine racemase - Prom 15471 - 15530 4.7 - Term 15514 - 15542 -1.0 15 9 Tu 1 . - CDS 15552 - 16841 1231 ## COG2834 Outer membrane lipoprotein-sorting protein - Prom 16861 - 16920 1.8 16 10 Tu 1 . - CDS 16954 - 17526 588 ## COG1309 Transcriptional regulator - Prom 17682 - 17741 5.9 + Prom 17638 - 17697 5.2 17 11 Tu 1 . + CDS 17804 - 18553 294 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 + Term 18610 - 18648 1.4 - Term 18586 - 18629 7.6 18 12 Op 1 . - CDS 18652 - 18780 243 ## 19 12 Op 2 . - CDS 18843 - 20258 1462 ## COG2148 Sugar transferases involved in lipopolysaccharide synthesis 20 12 Op 3 . - CDS 20308 - 21231 380 ## COG1216 Predicted glycosyltransferases 21 12 Op 4 . - CDS 21250 - 21651 146 ## COG2246 Predicted membrane protein - Prom 21753 - 21812 4.4 22 13 Tu 1 . - CDS 22610 - 23146 60 ## - Prom 23304 - 23363 5.9 - Term 24072 - 24121 6.5 23 14 Op 1 . - CDS 24364 - 25062 -19 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 24 14 Op 2 . - CDS 25113 - 25298 103 ## Fisuc_0502 glycosyl transferase family 2 25 14 Op 3 . - CDS 25383 - 25454 62 ## - Prom 25703 - 25762 2.1 26 15 Op 1 . - CDS 25887 - 26117 89 ## 27 15 Op 2 11/0.000 - CDS 26162 - 27166 464 ## COG1088 dTDP-D-glucose 4,6-dehydratase 28 15 Op 3 13/0.000 - CDS 27163 - 27732 135 ## COG1898 dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes 29 15 Op 4 . - CDS 27750 - 28493 434 ## COG1209 dTDP-glucose pyrophosphorylase - Prom 28522 - 28581 7.8 30 16 Tu 1 . - CDS 28593 - 29666 147 ## Isop_0016 hypothetical protein - Prom 29830 - 29889 4.6 31 17 Op 1 . - CDS 30162 - 30833 -76 ## 32 17 Op 2 . - CDS 30842 - 31300 186 ## 33 17 Op 3 . - CDS 31327 - 32250 -46 ## GYMC10_5815 glycosyl transferase family 2 - Prom 32306 - 32365 2.1 34 18 Tu 1 . - CDS 32417 - 32917 43 ## GYMC10_5816 ABC transporter related protein - Prom 33007 - 33066 4.3 - Term 33550 - 33584 -0.6 35 19 Tu 1 . - CDS 33633 - 34085 -12 ## COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component - Prom 34158 - 34217 12.7 + Prom 34372 - 34431 6.5 36 20 Tu 1 . + CDS 34618 - 37074 1280 ## GYMC10_5818 O-antigen polymerase + Term 37084 - 37123 8.1 + Prom 37084 - 37143 6.7 37 21 Tu 1 . + CDS 37305 - 38933 1117 ## Pjdr2_1997 S-layer domain protein + Term 38946 - 38981 6.0 - Term 38926 - 38974 7.6 38 22 Op 1 . - CDS 38987 - 39631 364 ## BCAH187_A1173 hypothetical protein - Prom 39666 - 39725 5.5 - Term 39737 - 39776 -0.0 39 22 Op 2 . - CDS 39801 - 39932 198 ## - Prom 39960 - 40019 6.7 - Term 40087 - 40133 6.1 40 23 Op 1 . - CDS 40318 - 41511 618 ## COG1228 Imidazolonepropionase and related amidohydrolases 41 23 Op 2 . - CDS 41513 - 42994 818 ## COG0591 Na+/proline symporter 42 23 Op 3 . - CDS 42994 - 43203 233 ## GK3241 hypothetical protein 43 23 Op 4 1/0.300 - CDS 43241 - 44482 823 ## COG1228 Imidazolonepropionase and related amidohydrolases 44 23 Op 5 . - CDS 44548 - 45681 323 ## COG0520 Selenocysteine lyase + Prom 45514 - 45573 4.8 45 24 Tu 1 . + CDS 45723 - 46421 267 ## COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases + Term 46556 - 46596 8.1 - Term 46544 - 46584 8.1 46 25 Tu 1 . - CDS 46653 - 47171 -76 ## - Prom 47388 - 47447 6.5 47 26 Op 1 . - CDS 47613 - 48224 -2 ## 48 26 Op 2 . - CDS 48299 - 48880 98 ## - Prom 48987 - 49046 4.3 - Term 49052 - 49090 -0.0 49 27 Op 1 41/0.000 - CDS 49154 - 50782 1711 ## PROTEIN SUPPORTED gi|167855908|ref|ZP_02478658.1| 50S ribosomal protein L28 50 27 Op 2 . - CDS 50920 - 51201 349 ## COG0234 Co-chaperonin GroES (HSP10) - Prom 51292 - 51351 6.0 - Term 51578 - 51609 3.2 51 28 Op 1 . - CDS 51611 - 52366 909 ## COG0805 Sec-independent protein secretion pathway component TatC 52 28 Op 2 . - CDS 52410 - 52715 304 ## GYMC10_0705 twin-arginine translocation protein, TatA/E family subunit 53 28 Op 3 3/0.200 - CDS 52745 - 53872 1116 ## COG0303 Molybdopterin biosynthesis enzyme 54 28 Op 4 11/0.000 - CDS 53862 - 54362 265 ## PROTEIN SUPPORTED gi|134277849|ref|ZP_01764564.1| ribosomal protein S16 55 28 Op 5 . - CDS 54399 - 54893 581 ## COG0315 Molybdenum cofactor biosynthesis enzyme 56 28 Op 6 . - CDS 54877 - 55701 247 ## COG0212 5-formyltetrahydrofolate cyclo-ligase - Prom 55831 - 55890 10.0 + Prom 55856 - 55915 3.6 57 29 Tu 1 . + CDS 56033 - 57988 2342 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains + Term 58017 - 58058 9.1 - Term 58003 - 58046 5.1 58 30 Op 1 . - CDS 58180 - 59898 1822 ## COG0840 Methyl-accepting chemotaxis protein 59 30 Op 2 . - CDS 59978 - 61729 1632 ## COG0366 Glycosidases - Prom 61820 - 61879 6.5 - Term 61826 - 61855 1.1 60 31 Tu 1 . - CDS 62035 - 63585 1429 ## COG0119 Isopropylmalate/homocitrate/citramalate synthases - Prom 63784 - 63843 2.8 61 32 Tu 1 . + CDS 64926 - 65882 693 ## COG3173 Predicted aminoglycoside phosphotransferase + Term 65976 - 66040 8.5 - Term 65968 - 66024 2.6 62 33 Op 1 9/0.100 - CDS 66094 - 67119 728 ## PROTEIN SUPPORTED gi|229232313|ref|ZP_04356740.1| (SSU ribosomal protein S18P)-alanine acetyltransferase 63 33 Op 2 20/0.000 - CDS 67172 - 67666 396 ## PROTEIN SUPPORTED gi|134300719|ref|YP_001114215.1| ribosomal-protein-alanine acetyltransferase 64 33 Op 3 12/0.000 - CDS 67686 - 68693 906 ## COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone 65 33 Op 4 2/0.300 - CDS 68690 - 69163 481 ## COG0802 Predicted ATPase or kinase 66 33 Op 5 . - CDS 69179 - 70210 1065 ## COG0611 Thiamine monophosphate kinase - Prom 70236 - 70295 6.6 - Term 70326 - 70369 8.2 67 34 Tu 1 . - CDS 70375 - 70569 381 ## + Prom 70614 - 70673 2.7 68 35 Tu 1 . + CDS 70761 - 71627 1036 ## COG1273 Uncharacterized conserved protein + Term 71656 - 71699 7.7 - Term 71648 - 71683 3.4 69 36 Tu 1 . - CDS 71712 - 72659 855 ## COG1793 ATP-dependent DNA ligase - Prom 72768 - 72827 2.6 + Prom 72640 - 72699 2.0 70 37 Tu 1 . + CDS 72843 - 73736 951 ## COG3285 Predicted eukaryotic-type DNA primase + Term 73764 - 73802 5.0 + Prom 73803 - 73862 10.8 71 38 Tu 1 . + CDS 73977 - 74348 210 ## - Term 74361 - 74405 10.1 72 39 Op 1 . - CDS 74428 - 75858 1500 ## COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes 73 39 Op 2 . - CDS 75957 - 76106 75 ## - Prom 76293 - 76352 6.0 + Prom 75969 - 76028 5.0 74 40 Tu 1 . + CDS 76062 - 76808 837 ## COG1011 Predicted hydrolase (HAD superfamily) + Term 76811 - 76852 2.1 - Term 76806 - 76834 1.0 75 41 Op 1 21/0.000 - CDS 76848 - 78332 1241 ## COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases 76 41 Op 2 . - CDS 78376 - 80304 2119 ## COG0069 Glutamate synthase domain 2 Predicted protein(s) >gi|333604985|gb|AFDH01000100.1| GENE 1 552 - 1073 587 173 aa, chain + ## HITS:1 COG:SA1727 KEGG:ns NR:ns ## COG: SA1727 COG4843 # Protein_GI_number: 15927485 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 7 169 12 174 200 172 50.0 4e-43 MISAQTILTIIVINIAYVSLSTIRMILVMKARRLLAASISTVEIFIYLMGLNIVLKNIDD PVNIIAYCVGWGAGVWLGIRIEGWLALGYTTLQIVVDYTETTLPDTLRNKGYGVTHWVAE GRDGPRLVMQVLAKRSLEKKLLSTLHELAPKAFVISYEPRFFRGGFWTRRLNP >gi|333604985|gb|AFDH01000100.1| GENE 2 1171 - 2394 1037 407 aa, chain + ## HITS:1 COG:BS_opuCA KEGG:ns NR:ns ## COG: BS_opuCA COG1125 # Protein_GI_number: 16080436 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, ATPase components # Organism: Bacillus subtilis # 1 371 1 367 380 373 51.0 1e-103 MIRLEGVIKRYDDGFVALKNLNLEFAEGQLHVLIGPSGCGKSTTMKLINRLINPSEGKVT IKGKDISQMDPVELRRNIGYVIQNIGLFPHMTIAKNVAVVPKLLKWDQQRIDTRVDELLR LVSLDPDTFRNRYPSELSGGQQQRIGVIRALAAEPDIILMDEPFSALDPISREQLQDELV RLQQDLKKTIIFVTHDMDEAVKIADNVVLMKDGEIVQHGSPEHILRYPANEFVKSFVGKK RLQADTGFEEIPTVDEVMAEHPITAYPTRGLAEAIKIMEKNRVDSLLIVDRQNRLIGTTS IFQVLDKYRQENITLADIAKPFHHTVETGTSLSVAIQLMNEHNLPYIPVVRENNTFAGLV TKGSVVRHIADVYTPAESDEFAETAEASLQASAEDGTQVPVGGSGGA >gi|333604985|gb|AFDH01000100.1| GENE 3 2395 - 3063 770 222 aa, chain + ## HITS:1 COG:BS_opuCB KEGG:ns NR:ns ## COG: BS_opuCB COG1174 # Protein_GI_number: 16080435 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, permease component # Organism: Bacillus subtilis # 4 213 1 208 217 164 44.0 1e-40 MDFLNSYGQFLSDRLPDILVAFREHLIISFLSILFGCIVAIPIGVYLAGNRIKWINSLVF ALSNLLQTIPSLALLAILIPLIGVGMKPAIIALFLYSLMPIMRNTFTGFQAVNPHLIEAA RGMGYSSIQRLVRIQLPLALPYIMSGVRVTTVYIISWATLATLIGAGGLGQLIVAGMGVN KKELIFTGAILAVILALIADFVLGALEKWLTSRTKTSSAKAA >gi|333604985|gb|AFDH01000100.1| GENE 4 3156 - 4055 903 299 aa, chain + ## HITS:1 COG:BS_opuBC KEGG:ns NR:ns ## COG: BS_opuBC COG1732 # Protein_GI_number: 16080424 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) # Organism: Bacillus subtilis # 1 294 1 300 306 246 46.0 4e-65 MKRVRRRLLAASLLAAVVVSASGCGRGDTILIGTQTYSEPKILAQMYKLLIEDRTDLKVD VLPDLASSGVIIDAMKKGDIQMSTLYSGELLNKHFPMEDKKRNREEVLAEAQAGFDKYFN FKWFNPYGFENTYAFTVRKELADEKGWKKISDIIPDAGSVKLGVDTTWLERESDGYKAFA KHYGLQFGDTLPMEVALVYSAVASKKVDIVLAYSTDARLKEYNLVTLEDDKQFFPPYDAS PVVKKELLAAHPELNDIIDLLIGKIDAKTMIDLNYEVDVKKRNEKKVAEDYLKQIGLLK >gi|333604985|gb|AFDH01000100.1| GENE 5 4088 - 4717 781 209 aa, chain + ## HITS:1 COG:BS_opuCD KEGG:ns NR:ns ## COG: BS_opuCD COG1174 # Protein_GI_number: 16080433 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, permease component # Organism: Bacillus subtilis # 7 205 10 209 229 152 46.0 5e-37 MELFFQYVSENWLDLLGLTYDHIVMVLLAILMALIVGVPLGILAARYRRLGSVILTAANI IQVFPSLALLVLLMIVFGLGFKTVVIGLFLYSLMPIIRNTFVGLTQVNPAITEAGRGVGM SQLQLMWKVQLPLSLPFIATGVRVAAVIAIGVATIAPLIGGGGLGREIYSGINMDNSARL YAGAIPAALLALLTDFVLGQVQKRMHISR >gi|333604985|gb|AFDH01000100.1| GENE 6 4976 - 5395 270 139 aa, chain - ## HITS:1 COG:BS_ydaG KEGG:ns NR:ns ## COG: BS_ydaG COG3871 # Protein_GI_number: 16077489 # Func_class: R General function prediction only # Function: Uncharacterized stress protein (general stress protein 26) # Organism: Bacillus subtilis # 1 124 1 125 140 107 40.0 9e-24 MSNPSLEQQIVSVLDKNEFCSFGTVENGKPRVRYMALFHDELTIYLATNRKTDKVEELRD NPHVHILVGFDGKTSSDILQIEATGSVSTDESLREKVWRDDFKEWFDGPHDPEYVILKIV PGRIEYYSGKSEPQVWQAK >gi|333604985|gb|AFDH01000100.1| GENE 7 5500 - 7113 1316 537 aa, chain - ## HITS:1 COG:BH1896 KEGG:ns NR:ns ## COG: BH1896 COG1075 # Protein_GI_number: 15614459 # Func_class: R General function prediction only # Function: Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold # Organism: Bacillus halodurans # 39 536 26 495 497 232 32.0 1e-60 MIQKVRARMIPLLGLSAVLACSSVVQAAQPPAPALHDDNPSGNFGDWYTGAVPPQASNGK PVILFVQGLHSNYNTWLKTDGYYEAAYKAGYRTAFVQLKDADGTGGDMWTNGPKLAEVIK KVANYYGVSQINIIAHSKGGIDTQAALLHYGAAPYVNVVHQLSTPNKGSELADMAYSDWT SWLADILGKKDDAVYSLQTSYMANFRTQTDSKPGVSATKTYMSGGEGDDGWFTAYWFAHA VLPGEDDGAVSVASALGLPYGIKSFTKNISHSAMTTASQTWSLVQPKLALGKTTVAAAAL QEENLSAAPQAAPAVSENSSFIMKGGSLAKGSAKEVFPLESGLGTISLDVLTAKETTQVT LTSPSGKKIPLNPAKSAEKDDAVLFSDAVHHTLTLENPEKGNWTLELSGEGDAYFMLARP EGRVKGQIKNARKQYKQGENAQIAVSFDGAGKLEDTQAKKAKLTRSGGKGIAKSLQQAGE VNLQTAKNEVLLNFKAPTEPGVYNISFDINGVNERQEPFTRSVNYNFAVTDEAGKVQ >gi|333604985|gb|AFDH01000100.1| GENE 8 8180 - 8653 274 157 aa, chain - ## HITS:1 COG:BH0532 KEGG:ns NR:ns ## COG: BH0532 COG3091 # Protein_GI_number: 15613095 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 1 147 1 147 151 164 53.0 9e-41 MDDGQLQEWVEQISLQAFGWPFRHRARFNRRLRATGGRYFTKSHDIEISWHQWETYGRDD VEKIIKHELCHYHLHLQRRGYQHRDADFKILLKQVGGTRFCRALPQRKEPTPYKYKLQCV ACGTEYYRKRKMDVRKYSCGKCRGKLKLYTLDFPKRS >gi|333604985|gb|AFDH01000100.1| GENE 9 8796 - 9161 484 121 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_4970 NR:ns ## KEGG: Pjdr2_4970 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 1 117 1 115 116 132 59.0 5e-30 MPTSVMKYAVLKLKDQLEFVEMPATHMYQLTALNGRLHKEIEKLTAHNVPELPVVIAECD NLEPVGTAFTVTGGLHYINKLEASFASIQESAYPIVSLLTEIRALQAQLEQWYEEYEEDQ Q >gi|333604985|gb|AFDH01000100.1| GENE 10 9453 - 10712 1251 419 aa, chain - ## HITS:1 COG:BS_ybbD KEGG:ns NR:ns ## COG: BS_ybbD COG1472 # Protein_GI_number: 16077234 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase-related glycosidases # Organism: Bacillus subtilis # 59 402 39 405 642 273 42.0 4e-73 MLHTWLRKGGTLALAVLLFISAGCSTSGPQAGPGNSQSGGKESQSSPIPTVEDPLKDQIA RMTLDQKIGQMVISGVDGLEMDEHARQLIDTYKVGGFILFKPNVKSAGQASALLNSLKEE NARTGSKIPLMLSVDEEGGRVSRMPDEYMNVPASRVIGSTKNLRFAAEIGDILAREVASL GFNTNFAPVLDINSNPKNPVIGDRSFGSTPELVGNLGVEMMKAIAAQKVIPVVKHFPGHG DTAVDSHIGLPVVEHDASRLRSFELVPFIKAFQSGADAVMVAHILLPKLDSTYPASLSPA VITDLLRKELNFGGVVFTDDLTMGAIVKSYGIGEAAVQAVKAGTDVALVCHEFDNTVRVV KALKQAAETGVLSERRIDESVYRILKLKYKYTLADHPAPQPDVGKINEQIGRVLDARLP >gi|333604985|gb|AFDH01000100.1| GENE 11 10905 - 13136 2077 743 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|51894064|ref|YP_076755.1| ribosomal protein S1-like protein [Symbiobacterium thermophilum IAM 14863] # 35 740 9 720 764 804 58 0.0 MANTDVQHADKQQAPKSYERTEEKTAATAARIVKQIAGELQLKASQVQTTVNLLDEGNTI PFIARYRKEMTGELDENFLRDIEERLNYLRNLEDRKLEVLRLIDEQDKLTGELQASIEKA VKLQELEDLYRPYRQKRKTRASVAKEKGLEPLAKFILKQPQKGSLQEEAEKYVREDKGVA TAEEALQGARDIVAEQLADDAKIRAWVRKFTHDNGILRTEAKKQEEESVYEMYYSYQELL KKMPPHRTLAINRGEREDVLKVALDVPVERIHEFIGRQVIQGPSVTRDALQSAVEDAYKR LIAPSIEREVRGELTERAETHAIQIFAGNLRNLLLQAPVKGQTVLGVDPAYRTGCKLAVV DETGKMLEVMVTYPTPPNNKVAEAKAAFKRLIDTYDVSLIVIGNGTASRETEQFVADLIA ELKARKLQYLIVNEAGASVYSASKLAQTEFPDLDVAERSAISIARRLQDPLAELVKIEPK AIGVGQYQHDVSQKHLDESLKAVVESAVNHVGVDVNTASPSLLSYVSGINSTIAKNIVKF REENGKFGSRKELQKVPRLGAKTFEQCIGFLRVPGSGNPLDNTPIHPETYDVVDKLLAEL RVELAGIGSQQLKELLQRQEPEELGPKLGIGVPTLRDILDSLQRPGRDPREELGTPIFRT DVLQIEDLKPGMELQGTVRNVIDFGAFVDIGIKSDGLVHISQLSDKFVKHPMDVVSVGDN VTVWVLNVDVKKGRVGLTMKQPQ >gi|333604985|gb|AFDH01000100.1| GENE 12 13318 - 13668 346 116 aa, chain - ## HITS:1 COG:BS_ydcE KEGG:ns NR:ns ## COG: BS_ydcE COG2337 # Protein_GI_number: 16077533 # Func_class: T Signal transduction mechanisms # Function: Growth inhibitor # Organism: Bacillus subtilis # 1 116 1 116 116 190 89.0 5e-49 MIVKRGDVYFADLSPVVGSEQGGVRPVLIIQNDIGNRFSPTVIVAAITAQIQKAKLPTHV EIDAETHGFDRDSVILLEQIRTIDKQRLTDKITHLDEESMRKVDEALQVSVGLIDF >gi|333604985|gb|AFDH01000100.1| GENE 13 13673 - 13915 236 80 aa, chain - ## HITS:1 COG:BH0521 KEGG:ns NR:ns ## COG: BH0521 COG0864 # Protein_GI_number: 15613084 # Func_class: K Transcription # Function: Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain # Organism: Bacillus halodurans # 1 80 16 95 95 77 67.0 6e-15 MPDNLLQEVDGIVEKENSNRSEFIRQAMKLYLLERKKRSLRESMQKGYMEMAKINLTIAD EAFQAEEEADNTLVRLVSGV >gi|333604985|gb|AFDH01000100.1| GENE 14 14170 - 15369 1163 399 aa, chain - ## HITS:1 COG:CAC0492 KEGG:ns NR:ns ## COG: CAC0492 COG0787 # Protein_GI_number: 15893783 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Alanine racemase # Organism: Clostridium acetobutylicum # 6 392 6 384 386 348 44.0 2e-95 MDAFYRPTYVEISLDALRSNLETFRRVLPGSVHMMAVLKADAYGHGAVEVSKVAMECGAT YLAVAFLDEAMELRNAGITAPILVLGYTPPEGIGLALEHDITLTVYTEELLEAASGYAQR DAAAGGNKPPLNIHIKIDSGMGRIGLHDEDEAVAFIARALQTRGIRVEGLFTHYANADES DKAYTYEQHAKFAGIVRKAGELPGARFPFVHAGNSATAIDLPELTYNMVRLGIAMYGLYP SEEVNKEQIRLKPVLSLKTGIVHLKTLPPGSGVSYGTIYHTQGDERIATLPIGYADGFSR LLTGKAEGLVRGRRAPVVGRICMDQCMLSTSDIPEAAFGDEVVLLGEQGGERITAEEIAS KLGTINYEVTCMISHRVPRVYVSGGRRVKAVNSLFRHLF >gi|333604985|gb|AFDH01000100.1| GENE 15 15552 - 16841 1231 429 aa, chain - ## HITS:1 COG:BH0519 KEGG:ns NR:ns ## COG: BH0519 COG2834 # Protein_GI_number: 15613082 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane lipoprotein-sorting protein # Organism: Bacillus halodurans # 1 230 1 224 334 218 45.0 2e-56 MRRVTWILAIVMSAALLLAGCGKKDAGSVVKDLDHVIGKLESYQGTGRMVLQTGQEPQEY QVEVWYQQPHYYRISLTNEKKDITQVVLRNDDGVFVLTPHLHKSFRFQSDWPENQGQVYL FQSLAQSILLDTERQFTKEGNSFVFDVAANYANSGQMARQKIWLDQKSLAPQKVEVSDSS SNVLVKLDFTQFEFGKKLEKDSFDMQRNMTSWDLKSLDKDAPVSGAVKEPIAGAASPDGK AAAAGTAPSTAGAAGKDAAAGAPASGASAGATADGGKAPAASPDKAADGSAKAPAAAAGT AATGAAGADKNAAANSSAGFGLIEPSYMPKGVAQQDIRDVKLGENTGIMVRYQGTYNYTL LELAPQTQTVSVLPGDIVDLGYTLGVVTGDEKKTLTWTYEGIEFRLATADLPHDELVKIA QSVAEEAGK >gi|333604985|gb|AFDH01000100.1| GENE 16 16954 - 17526 588 190 aa, chain - ## HITS:1 COG:lin2279 KEGG:ns NR:ns ## COG: lin2279 COG1309 # Protein_GI_number: 16801343 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 2 174 12 179 187 87 27.0 2e-17 MLRDALIALIGEQGYEKITVQDIANRAALNRATFYLHYRDKQDLMEQSMDDTLKELVDGL RPLFEDASEFRFDGGKPHPTFVWLFEEIARHAQFYRVVLGEQRMPYFTRGLTDVITGFVT KGVGTIAPEERQLAVPREMLVSYVVSAILGVILWWLQSGMPYTASYMAEKLMRLATRGPY VDDPFTGAKE >gi|333604985|gb|AFDH01000100.1| GENE 17 17804 - 18553 294 249 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 4 244 1 238 242 117 32 1e-25 MGRLEDKVVIITGAAMGQGETEAKLFAAEGARVVATDLQEEPLNRGVDEIRRAGGQAIGL KHNVASEEDWKRVVRKAVEQFGKVDVLVNNAGISTDSTLDTFTIENWDKVMSINLTGCVI GMKYAVPEMRKAGGGSIVNISSIAGIVALNFTNGYTAAKGALRSLSKASAVELAPDKIRV NSVHPGIIVTPMIQEALDQGAGHMFEAGTPLPRLGKPEDIAYGVLYLASDESSFVTGTEL IIDGGWTAR >gi|333604985|gb|AFDH01000100.1| GENE 18 18652 - 18780 243 42 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIDHEDAYRDDQMPMGRGLIIGVLMGAVMWAVIIGGFLYLVN >gi|333604985|gb|AFDH01000100.1| GENE 19 18843 - 20258 1462 471 aa, chain - ## HITS:1 COG:VC0934 KEGG:ns NR:ns ## COG: VC0934 COG2148 # Protein_GI_number: 15640950 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sugar transferases involved in lipopolysaccharide synthesis # Organism: Vibrio cholerae # 97 471 93 465 465 249 37.0 7e-66 MLRRNQQFLTQVYAIFDFAVIQTAFLIAWWVKFESGWLDANQPIPISVYAVWSAVYGAVA VAVGFFVGLYGPNRKKRFADALIKIVQTHLISLFIQLSLLFFFKEVHISREFLAMYIVLD IVLITVYRYVLKESLKRLREKGYNKQFVLILGAGTLGRRFHDKLLQHPELGYDIIGFLDD HGEHSEHKELPAAPYKPVIGSLDDLDEILQDKLIDEVIIALPLDVHHKFPRIIAACEKAG VRTLIIPDFFDYLPARPFFDNFAGMPLINVRDIPLDMISNRVIKRAFDLAFSLTAILITL PVMIVIAASIKLTSPGPVIFKQERVGLNRRKFYMYKFRSMRQETANTSDTGWTTADDPRK TKLGAFLRKTSLDELPQFFNVLFGHMSVVGPRPERPFFVEQFKEEIPKYMVKHHIRPGIT GWAQSNGLRGDTSISDRIQHDIFYIENWSFLFDIKIIWKTIVNGFTNKNAY >gi|333604985|gb|AFDH01000100.1| GENE 20 20308 - 21231 380 307 aa, chain - ## HITS:1 COG:CAC2321 KEGG:ns NR:ns ## COG: CAC2321 COG1216 # Protein_GI_number: 15895588 # Func_class: R General function prediction only # Function: Predicted glycosyltransferases # Organism: Clostridium acetobutylicum # 2 286 5 290 298 227 37.0 3e-59 MDLSIIIVSFNTRQITLNCLQSIYSSIVGYTFEVFLVDNSSTDGTTTAVMNTFPKVRIIK NKTNVGFSRANNQGIKEAIGRYILLLNSDTILKQDTLQIMLNFMQASPEIGASGCKVVLP NGTLDKACKRGFPTPSASFYYAFGVARLFPDIPRFNGYQLSHLNPDEEYPVDCLVGAFML VRRDTIDEVGLLDEEFFMYGEDVDWCYRIKQAGWQIYYYPKTEITHYKGASSLRKPFKII YEFHRAMFLFHRKHYKNKYSLLTNVAVYVGIGVKFAFAVLKNKVLPAFAAPEKQQDAGSR GSRETRE >gi|333604985|gb|AFDH01000100.1| GENE 21 21250 - 21651 146 133 aa, chain - ## HITS:1 COG:SA2219 KEGG:ns NR:ns ## COG: SA2219 COG2246 # Protein_GI_number: 15928009 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 10 124 8 125 128 57 33.0 6e-09 MNLKSRFFSAEFIRFGIVGVFNTLHHYLWFFVFGVFLNYDFANVFAFIISMIGSFYLNCY FTYKVRPTFKKFIKFPLVYLVQILMAYSIPKIGVEIFNVKEIFVPLLTSFSIPVVFLLSR YILRKEEKKIMKL >gi|333604985|gb|AFDH01000100.1| GENE 22 22610 - 23146 60 178 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSLPKMPLATDKYIFVYEINKSPDYIANGVYAQYYDLDSVVLEGDYLKVYTTDDSVAGWY KIYYDSGHSFREKESTYVIHATALDKNQLYFNYPETEIKQLRLDFPASANANVTIEKIVI NQNGVAKEIDMDKLGKNIQPVLGILNYSVDKNVLKISIEGENPHLIIRNFNELVETPK >gi|333604985|gb|AFDH01000100.1| GENE 23 24364 - 25062 -19 232 aa, chain - ## HITS:1 COG:DRA0037 KEGG:ns NR:ns ## COG: DRA0037 COG0463 # Protein_GI_number: 15807707 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Deinococcus radiodurans # 13 222 88 306 328 130 36.0 3e-30 MLEVALENKNIKYFMFADQDDIWLVDKIEISLSTLKKEEENSGQLPLLVHTDLTVVDQKL EVIGLSFFEYQKLNPKKVMFNNLLMQNVITGCTVIINRELAKVCFPISSSAIMHDWWIGL TASVFGKVVYLNRTTILYRQHSGNSIGAKKYDIRYLLERLTHKVTLIKNMYQARSFHNNY ADYMDESKRYILEQFLSLKDSTFLIIRFKLIKNRFLKHGILRNVGLLLKLKN >gi|333604985|gb|AFDH01000100.1| GENE 24 25113 - 25298 103 61 aa, chain - ## HITS:1 COG:no KEGG:Fisuc_0502 NR:ns ## KEGG: Fisuc_0502 # Name: not_defined # Def: glycosyl transferase family 2 # Organism: F.succinogenes # Pathway: not_defined # 1 55 2 56 288 67 60.0 2e-10 MKANYYIAVLLSTYNGQDYIKEFLNSLYNQTVDDFMLYIRDDGSKDDTRKIINEFKKTKK I >gi|333604985|gb|AFDH01000100.1| GENE 25 25383 - 25454 62 23 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLGFYRVKLTNFLGLPKDLNIQY >gi|333604985|gb|AFDH01000100.1| GENE 26 25887 - 26117 89 76 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGKLGAKYAEFLNPTRKKYTDMDVSSWTSLIKKSVSVLSRILYRMQLYIVVRIQQWTWQK VRQTLLLKSMLWVPEI >gi|333604985|gb|AFDH01000100.1| GENE 27 26162 - 27166 464 334 aa, chain - ## HITS:1 COG:MTH1789 KEGG:ns NR:ns ## COG: MTH1789 COG1088 # Protein_GI_number: 15679777 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-D-glucose 4,6-dehydratase # Organism: Methanothermobacter thermautotrophicus # 2 332 3 330 336 491 68.0 1e-138 MKLLVTGGAGFIGSNFVLYMLRQYPTYTIINLDAVTYAGNLENLKSVQNHPNYRFVKANI TDRIAIQEVFEQGIDVVVNFAAESHVDRSILDPEIFVRTNVMGTQVLLDAAKAYGVQKFV QVSTDEVYGSLEETGLFTEKTPLSPNSPYSASKAGGDMLVRAYHETFGLPVNITRCSNNY GPYQFPEKLIPLIIANALDDKSLPVYGDGQNIRDWLYVEDHCSAIDLVIHHGRNGEVYNI GGNNERTNLAIIKTILQELGKSENLITFVPDRPGHDRRYGIDPSKIMRELGWKPKYHFES GIKETINWYLQNRSWWENIRSGTYQDYYTRQYKE >gi|333604985|gb|AFDH01000100.1| GENE 28 27163 - 27732 135 189 aa, chain - ## HITS:1 COG:mlr7551 KEGG:ns NR:ns ## COG: mlr7551 COG1898 # Protein_GI_number: 13476272 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes # Organism: Mesorhizobium loti # 16 179 16 181 183 209 58.0 3e-54 MNIIPTKFSQALLFEPTVHGDNRGFFMESYSQKRFDDLGITYSFIQDNHSLSSETGVLRG LHYQLNPKAQTKLVRVLVGGIYDVIVDIRKGSPTFGQWQGFILSANNKRQLLVPRGFAHG FCTLVPNTEVLYKVDEYYSPENDRGILWNDPALGIDWPTSTPVLSDKDRRHPLLQDAELN FEYEEELHP >gi|333604985|gb|AFDH01000100.1| GENE 29 27750 - 28493 434 247 aa, chain - ## HITS:1 COG:MA2183 KEGG:ns NR:ns ## COG: MA2183 COG1209 # Protein_GI_number: 20091025 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-glucose pyrophosphorylase # Organism: Methanosarcina acetivorans str.C2A # 1 243 1 240 241 282 59.0 4e-76 MKGIILAGGTGSRLFPLTKVTNKHLLPVGKYPMIFYSVGKLKQANITDILVVTGKDHMGD VVNLLGSGHEMGVTFTYKVQDEAGGIAQALGLAEHFASGDQVVVILGDNVFEDNISTYVQ NFREQGAGAKILIQEVHDPQRYGVPELRGNHIVSIEEKPLNPRSNFAVTGIYMYDSLVFD IIKTLKPSIRGELEITDVNNAYIERGQLTCDVLNGWWTDAGTHASLAKANELAKDIIFGE EFGKLKL >gi|333604985|gb|AFDH01000100.1| GENE 30 28593 - 29666 147 357 aa, chain - ## HITS:1 COG:no KEGG:Isop_0016 NR:ns ## KEGG: Isop_0016 # Name: not_defined # Def: hypothetical protein # Organism: I.pallida # Pathway: not_defined # 5 324 5 324 386 288 44.0 2e-76 MIITTSICANYLPKAMVLAKSIKKADPTIKVVVSLLEREITPEAQAFEYFDDIVLGKDLG FENFEKFIFKHSIVEASTAVKGQLFLYLMENYQEETKFVYLDPDIQVLSSLTELEEALES NAIVLTPHLTIPEDIMDAVMDNELSALKHGAFNLGFLAVSRSEESKKFIEWWASRLNMFC YDDIPRGIFTDQKWMDLAPCFFDVYILKHPGYNAAPWNVSKRKIHINSNNEYIVNDKLLR FFHFSGFDSGANEGMINKYVPDKKNAIYKLRDEYVNEMNIMGQEELGAIPWSYDYFNSGE KIDRTTRIAYRDNLEMPYKFQDPFTNSNAEINTTSEQIVKKENFVKGIKKVVKKLIN >gi|333604985|gb|AFDH01000100.1| GENE 31 30162 - 30833 -76 223 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MDKERYILVFSHTNYLNSMGGTEKYIYEQASYNARSGIGTVQIFPSNRYDFYAEEESFYG INVGDTFLGYLTAQEIVEFIQDSAYKYKKTYIHHLLFWIYSDFKDIFEAVSFKGIPSFFV AHDFFACCSSYHMMYSDSNGQKGCIPDLMTYGTENVCFKCDHYTDLEKRKEIFNDIFTVC EKIVLPSQYVLEVFKLIYPKWEDKFLVHGHLRLIKDGIIKKEK >gi|333604985|gb|AFDH01000100.1| GENE 32 30842 - 31300 186 152 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSELIEEMNQQYSKIKREAERLGLLNMSMEEEQRKQDKLLFELEHIKQFLQEKYTKDVET SKNKVLQLEAQLEVMNVTLEEHRKNYENELQKREEATEKVLNELQVLLNSTSWKYTRFFR AAMNSLRELKNSAKHRVKNRIVKYKKKAIKKK >gi|333604985|gb|AFDH01000100.1| GENE 33 31327 - 32250 -46 307 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_5815 NR:ns ## KEGG: GYMC10_5815 # Name: not_defined # Def: glycosyl transferase family 2 # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 159 62 222 1106 162 47.0 2e-38 MASAFTVDMEIGDVESLTWATKFKDIKFDHIIFVDVLEHLKDPWRVLKIAVEFLKEEGTL ITSIPNISNNAVIMELLSGRFEYKTLGLLDNTHLRFFTKSSILELYEHAGLQPIEWYATY MMPEQTEFKQSYENYPLVRDFLQQRTEGEVYQYITVGKKSKDAGKLNQGMIEQRYRLSNY YLQLFWSANEEFTEYDSAHLPLHIDGSTITYDVPLPLNNEINKLRLDPISELALIKLSEI YLIETVCDNENGTPSYIQKWSNENNFEGCHFYNLVNFGGREPLISLNNDPYIILNPTTKI KKIKHIF >gi|333604985|gb|AFDH01000100.1| GENE 34 32417 - 32917 43 166 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_5816 NR:ns ## KEGG: GYMC10_5816 # Name: not_defined # Def: ABC transporter related protein # Organism: Geobacillus_Y412MC10 # Pathway: ABC transporters [PATH:gym02010] # 7 157 247 399 407 139 41.0 3e-32 MKTSPSQHIEEEEIEENQQDDVLNINGIEFYDTQFSDKKRFNYGEKLSIVVNYTLKKNVE GIVGGIALYDSQDNYICGLNTKLDKYPLPSEPGDYQLVLNYEQMNLLPGSYFVDVGFFES SGIVRLDFKKKMDFFTISTSEYFAEGITCIPHNWNSRKEAYDEIRL >gi|333604985|gb|AFDH01000100.1| GENE 35 33633 - 34085 -12 150 aa, chain - ## HITS:1 COG:PA2678 KEGG:ns NR:ns ## COG: PA2678 COG1682 # Protein_GI_number: 15597874 # Func_class: G Carbohydrate transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: ABC-type polysaccharide/polyol phosphate export systems, permease component # Organism: Pseudomonas aeruginosa # 4 150 121 267 267 77 40.0 8e-15 MIGSALFHYVIQLLILLLGILFTYSTIHWTVVFLPLVLLPLLLVALGLSWFLASLGVFIR DIGHIITLFMQGLMFLSPIFYPVSSVPEKFRALLFLNPMSYVVEDIRKILIWGQMPDWSF MGTSLLLSTIMVVLGYIWFVKTKGGFADVL >gi|333604985|gb|AFDH01000100.1| GENE 36 34618 - 37074 1280 818 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_5818 NR:ns ## KEGG: GYMC10_5818 # Name: not_defined # Def: O-antigen polymerase # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 4 810 6 814 819 620 41.0 1e-175 MYAYKKPKLDEREQAEKSSIIFWLLIGFVTLFLFWAPFQKALFNGNSLNFERPIYSAVIW ASIFLFLTGIYFFYFWKLRERKDLLSLFIFLIPLTYLISLLPAASKYSAVNLLLIQIVLV TLFLIGAYLTKSALGNKIIQTGLLTSGYVIVLFGIMNWLGNGKVAGAVIGWFSELDAAGL YKDAVMTDSNGLRLTSVFQYANTYAGFLIALWGTGLFLVSKNRGWSKVLVHALFLVPVLV SFMLTLSRGAIIFLPIIFFLILIFQKPSRQILLLVHAILSTLASFAVLSKITAIGIDVNK EFSASLSGKGWMLLIGASVIYGILALLVQRFLAPALESKLGNFYTKKWAPFAIPAGSIVL GILGVLIVMATPLKNLLPENVRIRLETINFGQHSVLERITFYKDASKLFADYPLFGAGGG AWSSLYEQYQNNPYTVRQAHNFFMQYLVEVGAVGILILAVLLVAIFAIYIRNYIRSTEQE RDKHFVYFIFVIAILGHSVLDFDMSYVYIGALVFLCLGAMIADVKTKEFAKQAAPVRYVY PSVILVLSIVTLFVSARYLSANSSYNKALEVAKTSQNYMEIVTPLNNALDLRPAHPEFVL FKVDMLSQLYTQTQDNQYYQEEIALINQARNKEPYNKLLLDREIKAAQSKGDNTKAAELI QYGMNHFIWDISFYERSIQYQVSEGLKNYAAKDKTATEKNWKQAMEIYNQVLAKMNELSK LPKGQLQGREFDVTNQIRSSIGQMQFVQGKYTDAEAMLLPFTTMELKDAPEQIGIRYYFA ALKKQNKTNQPALEKTSVQLPNIQHDIDQIITSTPPLQ >gi|333604985|gb|AFDH01000100.1| GENE 37 37305 - 38933 1117 542 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_1997 NR:ns ## KEGG: Pjdr2_1997 # Name: not_defined # Def: S-layer domain protein # Organism: Paenibacillus # Pathway: not_defined # 141 542 1706 2103 2105 260 37.0 1e-67 MNRWFTKTAQVLCFSLVVSAFTPILAFAKTEFSTPVSYTEGTVSGTVYLDERVAGDQTQI RVYGPNGNLLNVIDATYTSKFDATNNRYGYDFSTPVSSTYEYINLQSVVDSVYQRVNNAN YTNDSDNGSTTPGGSTGDGSDNGGGTTTPGDGSTAVNSIKASSDGSLDAKALQDALAKGD TLEIALNGSDMVNIPAWVLKDNSNYKQITVKNGSAVYYLPLAALNYDTLASSLSVGLNEL YIRVTVKMVSESMRSTMQTEAAAMGGKIIGTPVDFNLDATTAAGKTTMINTGNVYVPRSL NFDTVLNQAKTTAFLYNETTKTMTFVPAFYSFSDGKTDVMVKRQGNSIYGVLELNKTFSD IKGHWAESNITMLANKLVVDGVTNTTFQPDRSVTRAEFAAMLVRSLGIQNTGGTSTFKDV ASNQWYADVVATAAKLKLVDGYEDGTFRPNNQITREELSAMVVRALSYAGVNTSTEITKG QAMLTKFNDSHKIIWAKDEIAAALSLGIIDGMTSTTIEPLQQATRAQSATMLKRFLTAAK FI >gi|333604985|gb|AFDH01000100.1| GENE 38 38987 - 39631 364 214 aa, chain - ## HITS:1 COG:no KEGG:BCAH187_A1173 NR:ns ## KEGG: BCAH187_A1173 # Name: not_defined # Def: hypothetical protein # Organism: B.cereus_AH187 # Pathway: not_defined # 33 214 5 187 187 152 53.0 9e-36 MAKMVTCKTCSKEVATSAKVCPGCGAKLKAGFFKKAILGVVGFIIVIAIIANMGKDKPTT EASTKAGTETKKDAAPVQQELSKEGVSSDVKIVVDGFESKAEVGDNQFSKAKAQGAFKIV KVTLTNNQKDAITIDGNSFKLIDDQKREFSYSTEAQIALESSIKDKKDSFFLKKLNPGLS ATGYVVFDVPADAKGFVLEASGGFTGKKIKLKVE >gi|333604985|gb|AFDH01000100.1| GENE 39 39801 - 39932 198 43 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTEIIKGIIPLISNLLLAVGHFFLQKKIDKTNWKVPQREENTN >gi|333604985|gb|AFDH01000100.1| GENE 40 40318 - 41511 618 397 aa, chain - ## HITS:1 COG:BH2935 KEGG:ns NR:ns ## COG: BH2935 COG1228 # Protein_GI_number: 15615497 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Imidazolonepropionase and related amidohydrolases # Organism: Bacillus halodurans # 1 391 1 389 394 325 46.0 7e-89 MKTYIRNVTLYNGRGNKTEGANILFDETGILGLGTYDLTSQADLVIDGTGLTALPGLIDL HVHLTMDGSPDSMGKTIADSAGVAAYRALVSAGKQIQSGVVTVRNCGSKYNIDIELRKAI EEGIVKGPRIFACGQPITMTGGHCHMFGTEVDGIEEVRKTARSKIKEGADFLKLMATGGG LTRGVKAGASQLTEEELAVACQVAKEAGKRTAAHAQGNEGIKNAIRAGVTTIEHGVELDD EAIQLMKDRNTYLVPTLAAPYQIVKNGTAAGIPEFAVKKNEEAMIPHRESFRKAHKEKIK IAAGTDAGTPFNLHGDFATELELMKEEGMSLQDVIHAATYMAAEALGIEGETGSLEIGKW ADVILLEGDPEADFSAFRRVTHVFKSGESMYMHALEV >gi|333604985|gb|AFDH01000100.1| GENE 41 41513 - 42994 818 493 aa, chain - ## HITS:1 COG:BS_yhjB KEGG:ns NR:ns ## COG: BS_yhjB COG0591 # Protein_GI_number: 16078109 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Na+/proline symporter # Organism: Bacillus subtilis # 1 479 1 479 489 541 62.0 1e-153 MNTALLIMLGFLLLSLFLGLMARRGKDMNMEQWAVGGRGFGTVFVFLLLAGEIYTTSTFL GTSGWSYSKGGPAFYILCTSSLSYLLGYWLLPPIWRYAKEHKLVSQSDFFAIKYKSKGLG VLVAIVGVLALIPYLILQFKGLGIIVSAASYGSISPSLAIVISTIVITVYVSVSGIHGSA WTAVMKDILIFIIVLFLGIYLPYHYYGGIQSMFEAVNEAKPNFLLIPEKGLSFSWFISTT LLTVIGFSMWPHTFAAYFSAKSTNVFKKNTIIMPLYTLMLPFVLIVGFTAILQVPGLTGP NGDLALLKISIQTFDPWLVGLIGAAGLLTGVVPGSLLLMAASTAIAKNIYQVIFPATTDA GLSRVAKMIVPIIALVCMFYAIFNSSTIMTLLLMGYNFVTQLFPPLLASLVNKRFFTKQG AAAGMLVGVLTVIIITLNDLTIAQLFPGLPQAIQELNIGFIAVLLNTAALILVSMFTRKQ TIPMNNVGLEKGA >gi|333604985|gb|AFDH01000100.1| GENE 42 42994 - 43203 233 69 aa, chain - ## HITS:1 COG:no KEGG:GK3241 NR:ns ## KEGG: GK3241 # Name: not_defined # Def: hypothetical protein # Organism: G.kaustophilus # Pathway: not_defined # 1 59 1 59 66 65 50.0 8e-10 MRNYYWLVIIPFIGMLGGAVVFNQVTPYVLGLPFLLFWILLWIVLSSLTMLVIYQLDKSN GLLDKEGDD >gi|333604985|gb|AFDH01000100.1| GENE 43 43241 - 44482 823 413 aa, chain - ## HITS:1 COG:BH2935 KEGG:ns NR:ns ## COG: BH2935 COG1228 # Protein_GI_number: 15615497 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Imidazolonepropionase and related amidohydrolases # Organism: Bacillus halodurans # 9 403 7 385 394 255 39.0 1e-67 MANQKIFKNALLIDGKSNTVQKEALVMVENERITYVGLYDETIVQQAGDAELFDLKGMTL MPGMIDTHVHLCMAGEPSTFTDMVMDTPAFAAIKGVERAERSLEAGFTTLRTMGEKGHID IAIKKAVEQGIIVGPTIFASGKALTITGGHGDMFPEGVSVDGIGIVLDGVDQARRAAREQ LKLGADNIKMMATGGGMSPGPGTIAQLTIQEMQAAVEEAVKFEKVTAAHAIGVEGIHNAL KAGVRTIEHGTFLDDQGIELFLEKNAYLVPTLSAFKTIKYGRAGGVPEHHLKKVEYYQTA HEANLQKAIAAGVKIVAGTDAGTPFNYHGENAYELECLVRNGLSEMDAIKSATQVAAEAL RLTELGVIETGKIADMIVVDGNPLLDIKILQDKARIKRVYKGGQLVHTNSAEC >gi|333604985|gb|AFDH01000100.1| GENE 44 44548 - 45681 323 377 aa, chain - ## HITS:1 COG:BS_ycbU KEGG:ns NR:ns ## COG: BS_ycbU COG0520 # Protein_GI_number: 16077335 # Func_class: E Amino acid transport and metabolism # Function: Selenocysteine lyase # Organism: Bacillus subtilis # 9 372 9 363 370 293 44.0 5e-79 MDYPFGKERQYFPILKNKIQLSSCSQSAMSLQVEGAVKEYTDGWLAEGMDWTGWVHRVEM AKQSFATLINASPDEIAVLPSVSLAAAAVASALQFTTRRNKVVTTEMDFPSIGHVWLAQQ SRGAQVAFVPSENNEIPIEFYDQCVDEQTLIVSMSHAAYYNGLKQDLKQISSIVHDKGAR LFVDAYQSAGCVAIDVKEMDVDFLAAGAQKYLLGIPGIAFLYVKKELADELQPSITGWFG RIDPFSFDVKSLDYAEGTRRFDTGTPPMINAYAAHAALELINQIGVNRIESYLNELSSFA ISYGQEKGLTIASPLDLKRKAANTAFHCPNASLIEMKMRERGVIVSARNDVIRIAPHFYN KKEEVAIAIDTLYELKS >gi|333604985|gb|AFDH01000100.1| GENE 45 45723 - 46421 267 232 aa, chain + ## HITS:1 COG:BH0231 KEGG:ns NR:ns ## COG: BH0231 COG0664 # Protein_GI_number: 15612794 # Func_class: T Signal transduction mechanisms # Function: cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases # Organism: Bacillus halodurans # 28 220 23 216 237 79 28.0 6e-15 MTKIESAINSSVTSWLESLAFHWHPLPQLGQKLVFQKNAFIFLENQPDDFVYLVLNGRIR LYVTSLNGVEKTIAIIGKNGMIGENGIFDNVASYNHSAIAASKATLIKIDRKKLEETLKS NFELTRQVLLLVNLKMRIMSSQLLQLSSYSAIQRICHTLLQLVDTYGLKSGEKEFIGIGF THQELANLVSTSRVTAAKTLKKLELTGVISKQNGKYVIEDKARLISLGTTHN >gi|333604985|gb|AFDH01000100.1| GENE 46 46653 - 47171 -76 172 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSRFPVYEWVLEENINLSNDEERPDFYSEDGPFPAYVNLQEAKSFLEKTGYRMPWDFEWE YISKEFKNNLFICGEEIPSRDLSDDICLTQFGDSRLNKAASNIFGIAGLAIAAFTRIGGA SDEIIVRGGAAGFYPFQHPSQWAMLLTELQLPLKNMPGQLAGLRLCLDIPKI >gi|333604985|gb|AFDH01000100.1| GENE 47 47613 - 48224 -2 203 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MQINRESSKEKILNFDIRRTIILNLYIKEWSMPEYRVIMTKPEIGVYIEIYYFPSINDKI PARFATVGLSNSIRKTGKPTETEWMLALKPDLGQESLDRIFSYFCDLIAHNIENIKSSEA PRVMTESALAPENWTTKALLIDELRGESEDLEEIKIGEEIISVLWVVPITHKEARIILQE GIDAFDIYIEKSQYSIIDPTRPY >gi|333604985|gb|AFDH01000100.1| GENE 48 48299 - 48880 98 193 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVDERHLVYFKELLEGNSQISFRAYLSKNEDSLRKQFSPARFARLKFKSIDEIIKILDEE KISYIVNDQAIRNEKYLATFHPDALNEKGRLKEGFKDTIFNGIVHDFKTKGEDAVLTLHK YIEFPENINNKKNIEKLEDIEFFAETELCLGDKNLGLFLLKALASIERQFSDVDDIVLRA KEAVMKHQSSKGN >gi|333604985|gb|AFDH01000100.1| GENE 49 49154 - 50782 1711 542 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|167855908|ref|ZP_02478658.1| 50S ribosomal protein L28 [Haemophilus parasuis 29755] # 2 542 3 547 547 663 62 0.0 MAKDIMFSEDARRAMLRGVDALANAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIE LEDAFENMGAQLVKEVATKTNDVAGDGTTTATVLAQAMIREGLKNVTAGANPMVIRKGID KAVRAAVEELASIAKPIEGKQSIAQVAAISAADDEVGELIAEAMEKVGKDGVITVEESKG FATELEVVEGMQFDRGYISPYMITDTDKMEAVLENPYVLITDKKITNIQEILPVLEKVVQ QGKQLLIIAEDVEGEALATLVVNRLRGTFTCVAVKAPGFGDRRKAMLQDIAALTGGQVIT EELGLELKSATVQQLGTARQIRVTKENTIVVDGAGAKEDIDARVSQIKAQLEETTSEFDK EKLQERLAKLAGGVAVIKVGAATETELKERKLRIEDALNATRAAVEEGIVAGGGTALVSV YHAVAAVGSDGDEKTGVNIVLRALEEPVRTIAANAGQEGSVIVERLKKETIGIGYNAATG EWVNMIEAGIVDPAKVTRSALQNAASVAAMFLTTEAVIADKPEKDKPAMPDMGGMGGMGG MM >gi|333604985|gb|AFDH01000100.1| GENE 50 50920 - 51201 349 93 aa, chain - ## HITS:1 COG:BS_groES KEGG:ns NR:ns ## COG: BS_groES COG0234 # Protein_GI_number: 16077669 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Co-chaperonin GroES (HSP10) # Organism: Bacillus subtilis # 1 93 15 108 108 119 75.0 2e-27 MIKPLGDRVIIEAIAKEETTASGIVLPDTAKEKPQEGKVVAVGSGTLKDGERVELEVKEG DRVIFSKYAGTEVKYEGRELLIMRESDILAILA >gi|333604985|gb|AFDH01000100.1| GENE 51 51611 - 52366 909 251 aa, chain - ## HITS:1 COG:BH0553 KEGG:ns NR:ns ## COG: BH0553 COG0805 # Protein_GI_number: 15613116 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Sec-independent protein secretion pathway component TatC # Organism: Bacillus halodurans # 2 251 3 252 253 200 42.0 3e-51 MDKEQPLVEHLAELRKRIFWVLGVLIIGLVIGLVFAKNVILFLKSVPPADKIAWHVFSPW DALRLYMNFGFVVALLITLPVILYHIWAFVSPGLRESEQKASILYIPGAVVLFLAGLAFG YFVVFPMAFYFTTAISHSMGITELYGAAQYFSFMFNIILPLSVLFELPIVVMFLTKLRIL NPKRLAKMRRYAYMVLVILSTIITPPDAISAILVALPMIVLYEFSVLLSGFIYRKQLVQD AAWEAEYGEQK >gi|333604985|gb|AFDH01000100.1| GENE 52 52410 - 52715 304 101 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_0705 NR:ns ## KEGG: GYMC10_0705 # Name: not_defined # Def: twin-arginine translocation protein, TatA/E family subunit # Organism: Geobacillus_Y412MC10 # Pathway: Protein export [PATH:gym03060]; Bacterial secretion system [PATH:gym03070] # 1 48 1 48 71 72 62.0 7e-12 MFQNIGFTEILLVAVVCLLLFGPNKLPELGRAFGRTLSEFKKGARDMMSEHDQADKKAAE VKSAAAAPEEVPAPASLTQAAPAPAASSERAVSDNPRRLPD >gi|333604985|gb|AFDH01000100.1| GENE 53 52745 - 53872 1116 375 aa, chain - ## HITS:1 COG:mlr0093_1 KEGG:ns NR:ns ## COG: mlr0093_1 COG0303 # Protein_GI_number: 13470396 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin biosynthesis enzyme # Organism: Mesorhizobium loti # 10 373 6 320 330 120 28.0 5e-27 MKADSMLREVKVEDAVGLVLAHDLTQIIPGEFKGRLFRKGHQISEEDIPALLSIGKEHIY VLELAEGYLHEDEAALRLASAVRGANTERTEPHEGKVTLKSAIHGLAKIDKVFVDQVNGI GRIVMSTIRTNTVVKPGQPLAGTRVIPLVIEEEPVARVERLAAQRRSGQALDAGSLKPEN DGPADAAGKSAAPSGASTASPEEAPAAAAGLVAVKPFRSLRAGLITTGSEVFKGRIRDKF GPVVRAKVEALGSKVIDQRFTPDDMDAIVTEIRYFLGLGADLILVTGGMSVDPDDRTPGA ISRAGARIVSYGTPMLPGSMLMMAYIGSVPVMGLPGCVMHDPYTSFDVLLPRICAGEEIF REDITEMGYGGLLGC >gi|333604985|gb|AFDH01000100.1| GENE 54 53862 - 54362 265 166 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|134277849|ref|ZP_01764564.1| ribosomal protein S16 [Burkholderia pseudomallei 305] # 5 141 2 143 194 106 44 3e-22 MRWKVAILTASDRGSRGEREDTSAQVIRELVEEEIQGDIIEYRVVPDEMDEIMAALIEMT DYFQADLILTTGGTGLAARDVTPEATLSVIDRSAPGFAEAMRMKSIEKSPRAMLSRAVTG IRGSTLIINLPGSPKGVHESLMAIIDVLPHALSILTGREQEHADES >gi|333604985|gb|AFDH01000100.1| GENE 55 54399 - 54893 581 164 aa, chain - ## HITS:1 COG:BS_ydiG KEGG:ns NR:ns ## COG: BS_ydiG COG0315 # Protein_GI_number: 16077663 # Func_class: H Coenzyme transport and metabolism # Function: Molybdenum cofactor biosynthesis enzyme # Organism: Bacillus subtilis # 7 159 4 159 170 189 64.0 2e-48 MEQPDKLTHFNEQGRAKMVDISDKKETKRTAVARTRITMLPETLLRIREGRLAKGDVLAV AQVAGIMAAKKTADWIPMCHPLALSGVDIRFVYESGTELGIEAEVRTTGPTGVEMEALTA VSAAALTVYDMCKALQKDMVIGPTMLVTKTGGKNGDFHRFDTHS >gi|333604985|gb|AFDH01000100.1| GENE 56 54877 - 55701 247 274 aa, chain - ## HITS:1 COG:BH1417 KEGG:ns NR:ns ## COG: BH1417 COG0212 # Protein_GI_number: 15613980 # Func_class: H Coenzyme transport and metabolism # Function: 5-formyltetrahydrofolate cyclo-ligase # Organism: Bacillus halodurans # 126 255 66 185 186 83 36.0 4e-16 MNGSDKKEIRRHVETLRSQLTPKERASLERRVNERLTAWLKGIIASRELSPDTSGGTAPL PLKQPQETALSEENCPSHEYSGTRLSTGRETAGSCGSSRLPDIPIVLAYVPFRTECGIHR TIEACWEAGIRVFVPRSLHASRELLFHEIRQWKDLQKGMHGIMEPDPLSPTLQDPLTAFA VLVPGLAFDTSCGRLGYGGGYYDRFLEKLLQTAREEGRDAPLFAAAAFDVQLVERLPVEP HDIRLDVLITESAAYIRDPAADRKRGEGSDGAAG >gi|333604985|gb|AFDH01000100.1| GENE 57 56033 - 57988 2342 651 aa, chain + ## HITS:1 COG:BS_ydiF KEGG:ns NR:ns ## COG: BS_ydiF COG0488 # Protein_GI_number: 16077662 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Bacillus subtilis # 1 649 2 637 642 643 54.0 0 MLLQVNGIGKSYGTSSVLSNISLQIEDRERIGLVGVNGAGKSTLLQIIAGDLSYDEGDIF KAKETRIGYLRQNGGLQTDKTILEEMRTVFTALYAVERELRELEQQMADPKLIDNAKAYE DTMNRYSARSEWFRERGGYEIEARIRGILHGMGFGEFPPDTLIQTLSGGQKTRLALAKML LEEPDLLLLDEPTNHLDIRTLTWLESYLRGYPGAILVVSHDRYFLDSLVTAIYEIERTSS KRYTGNYSRFVELKEADYEIRMKQFEKQQEEIARMEDFVQKNIVRATTTKRAQSRRKALE RMERIDKPLGDLKRASFSFQIDQTSGKEVLQVRELALSVGEGKRLLDSVSFELRRGETAA LIGPNGIGKTTLLKTLIGKLSPDTGAIRWGTNVKIGYYDQEQTTLNPQKTILEEVWDTFP TIEEARIRSVLGNFLFSGEDVFKKIASLSGGEKARVALAKLMLLNANMLILDEPTNHLDL YSKEVLESALLDYEGTLLFISHDRYFLNKMAESMLELERHGVTHYLGNYDDYLEKKAELA EMEAERAREQAARDSKAKASSASAAAQQTDKPSSYEADKQAKREERNRQRRIEQLEQDIA RLEEEVTALEEELADPAVYNDYVLVQEKNALIEQKKGSLQACYEEWETLVG >gi|333604985|gb|AFDH01000100.1| GENE 58 58180 - 59898 1822 572 aa, chain - ## HITS:1 COG:BS_tlpB KEGG:ns NR:ns ## COG: BS_tlpB COG0840 # Protein_GI_number: 16080175 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Methyl-accepting chemotaxis protein # Organism: Bacillus subtilis # 215 572 303 660 662 227 37.0 4e-59 MITMMAALVVVLCALIMTLTYLQQKNDYYSRLKSIERVVELGWEQQLPVLTKAMDQMKST GKPDAAAAEMEAIRTMMEHYVKDGDMSNVALYYPEEKTADGKMALTVVAANETLDKAGLK PLTDYAFSEQYTKAFETVKKTGGQGVTPVYTDQAGEWVTILSPVADEAGKTMAYVGIDFD YDMLSWDLNKRLLMSLAFYVGMAVLFALLLGVFTRRILKPIGELSRLSLEVAEGNLAVSI PVRSEDEFGTLARNFNAMTASIHSLILDIRESSDQVSHAAEVLDTNAKQTTQATHQIATA IEQVASGAERQLQSTQESSNAMEEMATGIQRIAESAGYAAQSSESASEEAARGNGMIQHN VRQMSRMNDTVQRSVESINQLAQLSEEIGGITALISDIANQTNLLALNAAIEAARAGEHG RGFSVVSDEIRKLAEQSRQSSDKIAELVVTIRTGTGQAVGTMSHTAEEVTEMTKLVSESG EAFQRIVNHMDELAKQILEVSSSSQQMSAGTEEVAASISELSHMNQQTVESSQTVAASSE EQLASMEDISASAGALSDMSRELKQSISRFKL >gi|333604985|gb|AFDH01000100.1| GENE 59 59978 - 61729 1632 583 aa, chain - ## HITS:1 COG:BH2927 KEGG:ns NR:ns ## COG: BH2927 COG0366 # Protein_GI_number: 15615490 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Bacillus halodurans # 3 544 2 545 578 545 48.0 1e-154 MNREAFYHGTRSNWAYAYDNKTIHLRVRTQRDDVEEITVIASDKYDWDTFYQEISMAKTA SDSLFDYWEAEVVPSYKRLSYCFRLSAGSEQLWMTETGIHSEQPHPPGGYYAFPYIHEID LFSPPAWAKDAIFYQIFPERFANGNPGNDPEGVQPWGGKPERDNFFGGDLQGVLDHLDYL VDLGINAIYFTPVFKSPSNHKYDTLDYMQVDPHFGDNALLKKVVATCRERGIRVMLDAVF NHSALEFPAFQDVKEKGEESAFADWFHINEYPVAVKNGIPTYDTFGFFEGMPKFNTANPE VKKYLLDVAKYWIEEIGIDGWRLDVADEIDHRFWREFRQVVKAANPEAYIVGEVWNDSLM WLLGDQFDSVMNYPFSDKVLEFFSGPGMDGHSFASSMGFLLMRYPKQANEVVFNLLCSHD TPRVLTRVGGDKRRLKLCVVFLMTYMGTPCIFYGDEVGLQGEGDPDCRQCMEWHPDMQDR ELLDFYKLLIHLRKENRALREGSFRFLKADHGDPCIIYERIDAHTHFTIWMNNTEERITL QHPMVAEDWRDALSQEEVRPVDGVMHIELEELGYRILYRTLKK >gi|333604985|gb|AFDH01000100.1| GENE 60 62035 - 63585 1429 516 aa, chain - ## HITS:1 COG:BS_leuA KEGG:ns NR:ns ## COG: BS_leuA COG0119 # Protein_GI_number: 16079880 # Func_class: E Amino acid transport and metabolism # Function: Isopropylmalate/homocitrate/citramalate synthases # Organism: Bacillus subtilis # 4 500 2 499 518 432 45.0 1e-121 MTKRQIKIFDTTLRDGEQAPGCSLYPEEKVRIARQLVKMGVDTIEPGFPISSPGDFAAVQ QISRELQGVEICGFARAVKIDIDAAVKATQDAALRRIHMFISSSDIHLDFQLRKSREQVL AEARQMVAYAKQFCERIEFTAMDSSRTGREYLYELVEAVIAEGATIINLPDTVGYAMPED YGKMFSDVRKHARGADKVEFSTHCHNDLGLAVANSLAAIRNGANYVEVSVNGIGERAGNC SLEEIVMAIETHKDTLNMETGIALEEIYNTSTMVSRMMNMPIAFNKPVVGRNAFQHESGI HQDGLLKNRNTYEIMEPEKLGIPRSMIILGKHSGRHALKHRIGQYGVDLDAQSLEEVYAR FKDMADEQKHVTDDELMSLVGDAGASAAERFSLVQLQVVSSSDRSRVASATIRDNESGAE ATWSGTGDGPIEAIVNCIRQAVPMDVTFADLELYSLSASEKATGEATVTVSCGTQTYKSS GLDVDILFATAKAFLSACNQAVRANPSASQGVTLMA >gi|333604985|gb|AFDH01000100.1| GENE 61 64926 - 65882 693 318 aa, chain + ## HITS:1 COG:BS_ycbJ KEGG:ns NR:ns ## COG: BS_ycbJ COG3173 # Protein_GI_number: 16077321 # Func_class: R General function prediction only # Function: Predicted aminoglycoside phosphotransferase # Organism: Bacillus subtilis # 34 312 26 304 306 270 47.0 2e-72 MNDSVKKSIPLTEQEQLNHFRLLAAKYNLELDPSKPLELNDSGLDFLAASARSTDDSSWI LRIPRRSDVIQSAAYEAKVLELVGRSLPVAVPGWQINRPDFIAYRKLPGTPAATVDAAAK TYKWHIDPEAPSPEFVQSLAAVMASLHRIDGRGAEQAGLLALEAVDLRAAAAARMEVVRQ AYGVSDELWERWQAWLADASYWPEHTSLIHGDLHPGHILVDGNERVCGLLDWTEAECGDP ATDFTAFYTVFGEEALSVLLKEYEKAGGRVWPRMKEHIAQLQGAYAVTIGLFALKSGLEE YADMAREALGVTVHKSAD >gi|333604985|gb|AFDH01000100.1| GENE 62 66094 - 67119 728 341 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229232313|ref|ZP_04356740.1| (SSU ribosomal protein S18P)-alanine acetyltransferase [Cryptobacterium curtum DSM 15641] # 9 338 519 858 860 285 46 2e-93 MNTTKPVYILAIETSCDETSAAVIENGTVIRSNVVSSQIETHRRFGGVVPEIASRQHVES ITWILQEALDQAGLAMKDMSAIAVTQGPGLVGSLLVGVVAAKALAFSLGLPLIGVHHIAG HIYANQLVHKLEYPLISLVVSGGHTELVYMESEGSFKIIGQTRDDAAGEAYDKVARALKL PYPGGPHIDRLAQEADGEIPMPRAWLDDSYDFSFSGLKSAVLNVLNQSRMRGEEPVAAHV AKGFQSSVVDVLVEKAARAVREYGAKQLLLAGGVAANRGLREELTKRCAELGVPLLLPPM DLCSDNAAMIGAAAFLKWNRGDITGPEFKAEPVLSLEKWGY >gi|333604985|gb|AFDH01000100.1| GENE 63 67172 - 67666 396 164 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|134300719|ref|YP_001114215.1| ribosomal-protein-alanine acetyltransferase [Desulfotomaculum reducens MI-1] # 18 157 8 147 159 157 51 2e-37 MDERRWEQPVSTPIFRVMRLDDIPHICEIEQEAFTTPWSAGAFHNELTSNHFAHYTVMMV DGVIAGYGGMWLIMDEAHVTNIAISGRFRGRKLGVSLVHQLQSKARSLGAVRMTLEVRAS NYVAQRLYDKMGFRYVGVRKGYYTDNNEDAIIMWADLPDTNQPA >gi|333604985|gb|AFDH01000100.1| GENE 64 67686 - 68693 906 335 aa, chain - ## HITS:1 COG:BS_ydiC KEGG:ns NR:ns ## COG: BS_ydiC COG1214 # Protein_GI_number: 16077659 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Inactive homolog of metal-dependent proteases, putative molecular chaperone # Organism: Bacillus subtilis # 40 176 3 126 229 120 47.0 3e-27 MSSGNGNSTQEREKVKVSPLAGDSEGRESSRSGFDGNGYVLALDTSTASLAVALLQGGRV VAEKHTIVERNHSIHLMPHLQELLASRGIRPNDLTAVVAGQGPGSYTGVRIAVTVAKTFA WSLGIPAAAVSSLEALALGGRTALLADEGGGGTDGAVRWFVPLMNARRGQAFTAVYASAG NEPADELLGAEDISGASSSDNTGSRWARLQPDGIRLVADFTRHIGDDMAGAEAAGTTGGQ SAGDGGTVVVPSGFAKPQEIVFVGETSFFEETIGQAAAELSIPVRVLPYDLTAAEVGLLG LPRLKRGETIDKYTFVPNYTQLTEAEVNLMAKAKS >gi|333604985|gb|AFDH01000100.1| GENE 65 68690 - 69163 481 157 aa, chain - ## HITS:1 COG:BS_ydiB KEGG:ns NR:ns ## COG: BS_ydiB COG0802 # Protein_GI_number: 16077658 # Func_class: R General function prediction only # Function: Predicted ATPase or kinase # Organism: Bacillus subtilis # 4 153 5 153 158 155 49.0 4e-38 MAYQYKAADERDTEALAAQLAMLAGPGAVIALDGDLGAGKTRFSQAVAKSIGVQGVVNSP TFTLIKEYEGREFPLYHMDVYRISLEEAEDLGLDEYFYGEGLTLIEWASLVEELLPPNRL EIYIEHSGGDERVFRLNPSGQPYESWCANLKENGWLV >gi|333604985|gb|AFDH01000100.1| GENE 66 69179 - 70210 1065 343 aa, chain - ## HITS:1 COG:BH0544 KEGG:ns NR:ns ## COG: BH0544 COG0611 # Protein_GI_number: 15613107 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine monophosphate kinase # Organism: Bacillus halodurans # 4 341 3 327 328 242 44.0 6e-64 MQHDEFGLIRLLTGDRQQADGMRSQGVVVGIGDDAAVTALSPGMQLVASCDTMTEGIHFL PVTMRDEDIGFKAMASNISDMAAMGAKARYALVALSLPKDADTEQIRRIYAGLYECADLF DVAVIGGDTTSTRGGIVLTVTILGEVPAGRALLRSGAKPGDAVFVTGPLGGSAAGLSYLL HRGTDAALWGELPAEAAELVRAHTRPLPQAAAGELLQRTGLCRALNDISDGLASEAGEIA EASGVGLLIAEEKLPLAEGLRACAEKLAADPLEWVLYGGEDYQLLGTAAEADLAALREAF AGEGLPLHVIGRVTAADEGVRLQRPDGTVQPLPKRGYNHFAAK >gi|333604985|gb|AFDH01000100.1| GENE 67 70375 - 70569 381 64 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGDDKQQKEAKDGNHQGRDDYYMDIDRMINEGLGGGQVTVHNGLIEESTTDTMGYPESAR DEEG >gi|333604985|gb|AFDH01000100.1| GENE 68 70761 - 71627 1036 288 aa, chain + ## HITS:1 COG:BS_ykoV KEGG:ns NR:ns ## COG: BS_ykoV COG1273 # Protein_GI_number: 16078406 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 1 255 18 275 311 261 50.0 8e-70 MHTVWKGAISFGLVHVPVKMFSATEEKDISMRYIHKRCTTPLSYVRKCTTCDTEVEWGEI TKGYEYEPGRFVLFEKEELEKISGEATKEIKILDFVNLTDIDPIYFQKTYYLSPGDTGAN AYNLLLESIKQTGKIGIATISIRSKSSLAAVRVIDNCIALETIFYPDEIRAISQVPNLPE ASNVNDKELTMAKMLIEQLSTPFEPEKYQDDYRTALMEAIQQKVAGEEVQVAPEQKRTNV IDLMSALQASLEAVKPVAADKSDAKAKAKPKAAAKPRKPKEKAKETVS >gi|333604985|gb|AFDH01000100.1| GENE 69 71712 - 72659 855 315 aa, chain - ## HITS:1 COG:AF1725 KEGG:ns NR:ns ## COG: AF1725 COG1793 # Protein_GI_number: 11499314 # Func_class: L Replication, recombination and repair # Function: ATP-dependent DNA ligase # Organism: Archaeoglobus fulgidus # 19 309 20 310 313 134 32.0 3e-31 MNLPRVVPFEPVSTDQAPSGGEWIAQFKWDGVRVLTYYDGTGVQLFNRKLNERTLQYPEY QVVTDYCQARSVILDGEIIALENGKPSFHQVMKRDGLRSGKSLAGSVQKVPVVYMLFDIL YCNDEWVIDKPLSERQALLEELIIPDDRVQIVQSFTQTEELFGIAQAHGLEGVVYKDLGS TYALKGKDHRWRKHKNYLDVNAVIGGVTYRSGVVNAILLGLYNEEGQLVYIGHAGTGKLS RQDWIDLTALTKPLIVPERPFINEPERSREAAWLQPRLTVKIRFMEWTRYLTLRQPSIQA FLSVVPEECTFLREK >gi|333604985|gb|AFDH01000100.1| GENE 70 72843 - 73736 951 297 aa, chain + ## HITS:1 COG:BH2209_2 KEGG:ns NR:ns ## COG: BH2209_2 COG3285 # Protein_GI_number: 15614772 # Func_class: L Replication, recombination and repair # Function: Predicted eukaryotic-type DNA primase # Organism: Bacillus halodurans # 18 275 9 272 299 208 40.0 9e-54 MPTGYKKTQGTIMVEGQELTITNPEKPLWPEAGITKLDFLQKLIELSPYLLRYCRDRHLT TIRFPHGIHDKSFYQKNTPEPVPDFVNLAPLDGIRYVNLDSLPTLIWLGNLACLEFHPSF HRIGETLPAEWLIDIDPSLEVEPRIMEAAHLIGEVLDSLHIRSVPKTSGATGVQIYVPIQ HGYTFEQLRKIGYFIGSFVVKKYPKLFTIERLKKNRGDLIYFDYLQHWCGKTLSAPYTPR AKIHGTVSTPLLWEEVERRCDPRDFTLHVIVERIKKMGDLIEKVPPQNLDAVLSHLE >gi|333604985|gb|AFDH01000100.1| GENE 71 73977 - 74348 210 123 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLLGLLVLLFILFKMVPLLDAGQPTFWPTLIFVGCILMNMSCDIFLSPFLKQPDERMKAI RSKAYFYSYFATLIYMAAAAVLVLMEMTPIPLPLIFLDLIAFAGLTPNLLLILFFKRSPK LLS >gi|333604985|gb|AFDH01000100.1| GENE 72 74428 - 75858 1500 476 aa, chain - ## HITS:1 COG:BH2858 KEGG:ns NR:ns ## COG: BH2858 COG1502 # Protein_GI_number: 15615421 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes # Organism: Bacillus halodurans # 3 476 28 503 503 398 42.0 1e-110 MLWLVIALLLFIFQIVTIVVVEFRNPTKTVAWLMILFILPVIGFIMYYFLAKEYSQRRHV KRKNRRVLGEMQREMRRELENTKKGRDYPVPSIVKEPRLFGLLSNIPSSPITRNNEVEVL TNAEAAYEAMFEAMENAKHHIHFEFYIVRHDDTGKKFQELLIRKAREGVKVRVIYDGIGS YKLASSYIRELIEAGIDTYCFLPAFIAFFDKRMNYRNHRKIIVVDGTVGFVGGINIGDEY LGKHPVLGFWRDTHLKLVGDSVYYLQSTFLSDWEFVCRQKLVDTNFFPEHTCEGHKPVQI VASGPDAHWDSILESYFGGITTAKKRIYITTPYFIPDASLIMGLKTAAISGVDVKIIFPQ IPDSWIVHYASLSYIHELMQTGVRFYQYQPGFVHAKVTIIDDLFATVGTANMDMRSFYSN FELNAILYDKESIERLEHDFLEDLKNSKRIILSEFEKRSRFQRGKEVLGRLLSPLF >gi|333604985|gb|AFDH01000100.1| GENE 73 75957 - 76106 75 49 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNEGVIQIEQNGLSHVLSLLVSVDRFNDYYTMSGVDNPALQDNVIGLCL >gi|333604985|gb|AFDH01000100.1| GENE 74 76062 - 76808 837 248 aa, chain + ## HITS:1 COG:CC2817 KEGG:ns NR:ns ## COG: CC2817 COG1011 # Protein_GI_number: 16127049 # Func_class: R General function prediction only # Function: Predicted hydrolase (HAD superfamily) # Organism: Caulobacter vibrioides # 4 234 10 229 241 80 30.0 2e-15 MRQTILFDLDDTLIHCNKYFNVVIQQFVDTMLTWFAGHRLTDEDIKHKQLEIDLAGVEIH GFKAERFPQSFIETYHFYSDFYDRTPRKEEEKWLYQLGNSVYEHSIEPYPMMDTTLQSLT DQGHELYLYTGGDATIQMRKIQEAGLHRYFGERIFVALHKTREFMETLIHTQQFERARTW MIGNSVRTDVLPAIEAGINAIHIPAQLEWKYNIVDITATPKGAFFTLPSLTEVPQVISDY SGKQAVSL >gi|333604985|gb|AFDH01000100.1| GENE 75 76848 - 78332 1241 494 aa, chain - ## HITS:1 COG:sll1027 KEGG:ns NR:ns ## COG: sll1027 COG0493 # Protein_GI_number: 16329369 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: NADPH-dependent glutamate synthase beta chain and related oxidoreductases # Organism: Synechocystis # 1 494 1 494 494 672 62.0 0 MGKPTGFIEFQRELPTERAPLQRIQDWKEFYNKNSEEKLQVQGARCMDCGIPYCHTGKII AGSTTGCPVNNLIPEWNDLVYRGQWREALDRLHKTNNFPEFTGRVCPAPCEGSCTVGLID SPVTIKDIEKTIVDRGFEEGWIVPEPPKTRTGKKVAVIGSGPTGLAAAAQLNKAGHTVTV YERDDRIGGLLTYGIPNMKLEKHLVQRRVDLLAAEGVNFVTNAEIGKNVPVDQLKDEFDA VILAIGATRPRELDIKGRELKGIYPAMEFLHKNTKSLLDSNLADGEYINAEGKDVIVIGG GDTGTDCVATAVRHKAKSVVQFQYREKPPETRAVSNPWPEWPKVYKLEYGHEEAKAVHGK DPREYLTLSENFVGDENGNLTGLKTVKVRWRSDDQGRLVPEEVEGSEKVYPAQLVFLAMG FAGPEQNLLDQLGIERDVRSNAKAQYGKYKTNVEGIFAAGDVRRGQSLVVWAINEGREAA REVDRFLMGSSNLP >gi|333604985|gb|AFDH01000100.1| GENE 76 78376 - 80304 2119 642 aa, chain - ## HITS:1 COG:BH1728_2 KEGG:ns NR:ns ## COG: BH1728_2 COG0069 # Protein_GI_number: 15614291 # Func_class: E Amino acid transport and metabolism # Function: Glutamate synthase domain 2 # Organism: Bacillus halodurans # 1 307 495 801 801 546 83.0 1e-155 SISKEAHEALAIAMNRIGGRSNTGEGGEHPNRFTPDENGDLRRSSIKQVASGRFGVTSNY LVNADEIQIKMAQGAKPGEGGQLPGKKVYPWVAEVRGTTAGVGLISPPPHHDIYSIEDLA ELIHDLKNANPQARISVKLVSEVGVGTIAAGVAKGKADVILISGYDGGTGASPQTSIRHA GLPWELGLAEAHQTLILNNLRSRVVLESDGKMMTGRDVIVAALLGAEEYGFSTAPLISLG CIMMRVCHLDTCPVGVATQNPELRKHFMGEPEHVVNFMHFIAQDVRETMAELGFRTLEEM IGRTEFLAQEEEAGHWKLEGLDLSPLLHQPEMPEEVGRYNQMQQDHGLEKSLDMREILPL CKPALEYQDHVRIELPINNTNRVVGTILGSEVTRRYGAKGLPHDTIRLHFTGSAGQSFGA FVPKGVTLSLEGDANDYVGKGLSGGKVVIFPPSESTFVPEDNIVIGNVGFYGATDGEAYI RGIAGERFAVRNSGVRVVVEGVGDHGCEYMTGGRVVILGKTGRNFAAGMSGGVAYVLDED GTMASRCNTEMVSLEQVEESYEINELKLMIQHHATFTDSSIAHRVLGRWDEYIWKFVKVI PKDYKRMFDAIERMKRSGLSQQDAVMKAFEENTRDLARVGGN Prediction of potential genes in microbial genomes Time: Sun Jul 17 09:56:41 2011 Seq name: gi|333604984|gb|AFDH01000101.1| Paenibacillus sp. HGF7 contig00065, whole genome shotgun sequence Length of sequence - 734 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + TRNA 55 - 146 63.1 # Ser GGA 0 0 + TRNA 154 - 227 78.9 # Met CAT 0 0 + TRNA 239 - 310 65.9 # Glu TTC 0 0 + TRNA 356 - 431 94.8 # Val TAC 0 0 + 5S_RRNA 362 - 416 94.0 # AF302131 [D:490..741] # 5S ribosomal RNA # Streptococcus agalactiae # Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus. + TRNA 449 - 525 82.6 # Met CAT 0 0 + TRNA 534 - 610 69.6 # Asp GTC 0 0 + TRNA 635 - 710 69.8 # His GTG 0 0 Predicted protein(s) Prediction of potential genes in microbial genomes Time: Sun Jul 17 09:56:54 2011 Seq name: gi|333604939|gb|AFDH01000102.1| Paenibacillus sp. HGF7 contig00070, whole genome shotgun sequence Length of sequence - 52949 bp Number of predicted genes - 47, with homology - 35 Number of transcription units - 26, operones - 5 average op.length - 5.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) + 5S_RRNA 140 - 260 91.0 # DQ062685 [D:368..491] # 5S ribosomal RNA # Paenibacillus popilliae # Bacteria; Firmicutes; Bacillales; Paenibacillaceae; Paenibacillus. + Prom 671 - 730 5.6 1 1 Op 1 29/0.000 + CDS 968 - 1453 447 ## COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase 2 1 Op 2 3/0.000 + CDS 1450 - 2853 958 ## COG0026 Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) 3 1 Op 3 4/0.000 + CDS 2949 - 4244 1415 ## COG0015 Adenylosuccinate lyase 4 1 Op 4 15/0.000 + CDS 4275 - 5168 990 ## COG0152 Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase + Term 5177 - 5229 9.4 5 1 Op 5 23/0.000 + CDS 5511 - 5750 385 ## COG1828 Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component 6 1 Op 6 9/0.000 + CDS 5771 - 6466 795 ## COG0047 Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain 7 1 Op 7 10/0.000 + CDS 6444 - 8687 2306 ## COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain 8 1 Op 8 13/0.000 + CDS 8672 - 10153 1579 ## COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase + Term 10226 - 10259 0.0 9 1 Op 9 21/0.000 + CDS 10277 - 11317 941 ## PROTEIN SUPPORTED gi|169632702|ref|YP_001706438.1| phosphoribosylaminoimidazole synthetase 10 1 Op 10 10/0.000 + CDS 11319 - 11957 650 ## COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN + Prom 11964 - 12023 1.5 11 1 Op 11 17/0.000 + CDS 12046 - 13590 1874 ## COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) 12 1 Op 12 . + CDS 13610 - 14878 1583 ## COG0151 Phosphoribosylamine-glycine ligase + Term 15109 - 15150 1.8 13 2 Tu 1 . - CDS 15291 - 15443 179 ## + Prom 15447 - 15506 7.2 14 3 Tu 1 . + CDS 15754 - 16980 1072 ## COG4642 Uncharacterized protein conserved in bacteria + Term 16996 - 17038 11.0 - Term 16984 - 17026 6.4 15 4 Tu 1 . - CDS 17052 - 17480 418 ## COG3011 Uncharacterized protein conserved in bacteria - Prom 17726 - 17785 4.4 - Term 17979 - 18016 6.1 16 5 Tu 1 . - CDS 18025 - 18582 249 ## gi|167464334|ref|ZP_02329423.1| hypothetical protein Plarl_17559 - Prom 18797 - 18856 5.1 + Prom 18791 - 18850 6.5 17 6 Tu 1 . + CDS 18922 - 19212 312 ## COG4496 Uncharacterized protein conserved in bacteria + Prom 19615 - 19674 4.4 18 7 Op 1 . + CDS 19701 - 20489 806 ## Pjdr2_0881 cobalamin (vitamin B12) biosynthesis CbiX protein 19 7 Op 2 2/0.000 + CDS 20499 - 21428 966 ## COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase 20 7 Op 3 . + CDS 21875 - 23926 1338 ## COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase + Term 23940 - 23996 -0.9 21 8 Tu 1 . - CDS 24183 - 24338 115 ## - Prom 24449 - 24508 1.7 + Prom 24110 - 24169 3.0 22 9 Tu 1 . + CDS 24306 - 24455 102 ## + Prom 25092 - 25151 4.8 23 10 Tu 1 . + CDS 25290 - 26270 87 ## COG2334 Putative homoserine kinase type II (protein kinase fold) + Term 26292 - 26340 4.3 + Prom 26288 - 26347 4.2 24 11 Tu 1 . + CDS 26408 - 26497 71 ## - Term 27402 - 27440 5.4 25 12 Tu 1 . - CDS 27464 - 28090 67 ## Closa_2787 helicase - Prom 28310 - 28369 3.4 26 13 Tu 1 . + CDS 31071 - 31259 79 ## - Term 32103 - 32146 3.1 27 14 Tu 1 . - CDS 32185 - 32994 154 ## COG1112 Superfamily I DNA and RNA helicases and helicase subunits - Prom 33017 - 33076 3.3 - Term 33447 - 33481 5.3 28 15 Tu 1 . - CDS 33491 - 34159 267 ## COG1344 Flagellin and related hook-associated proteins - Prom 34253 - 34312 3.3 + Prom 34595 - 34654 2.8 29 16 Tu 1 . + CDS 34692 - 34874 73 ## + Term 34966 - 35007 -0.9 + Prom 35318 - 35377 6.2 30 17 Tu 1 . + CDS 35624 - 36901 409 ## Fluta_0804 hypothetical protein + Term 37122 - 37160 -0.8 - Term 36867 - 36914 6.6 31 18 Tu 1 . - CDS 36915 - 37202 206 ## Pjdr2_0300 hypothetical protein - Prom 37331 - 37390 7.2 + Prom 37232 - 37291 6.4 32 19 Op 1 . + CDS 37374 - 38090 340 ## COG0491 Zn-dependent hydrolases, including glyoxylases 33 19 Op 2 . + CDS 38168 - 38881 702 ## BPUM_0832 hypothetical protein + Prom 38900 - 38959 2.8 34 20 Op 1 . + CDS 38985 - 39083 111 ## 35 20 Op 2 . + CDS 39197 - 39544 298 ## Pjdr2_1331 hypothetical protein + Term 39582 - 39626 6.9 36 21 Tu 1 . + CDS 40356 - 41861 1615 ## Haur_1146 TROVE domain-containing protein + Term 41924 - 41982 10.1 37 22 Tu 1 . + CDS 42261 - 43211 922 ## COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component + Term 43272 - 43310 7.1 + Prom 43446 - 43505 5.4 38 23 Tu 1 . + CDS 43656 - 45035 1568 ## COG1113 Gamma-aminobutyrate permease and related permeases + Term 45110 - 45158 13.0 39 24 Tu 1 . - CDS 45158 - 47632 1564 ## COG0642 Signal transduction histidine kinase - Prom 47794 - 47853 12.4 + Prom 47758 - 47817 5.8 40 25 Op 1 . + CDS 47938 - 48075 76 ## + Term 48089 - 48135 8.5 41 25 Op 2 . + CDS 48166 - 48639 357 ## gi|229182361|ref|ZP_04309630.1| hypothetical protein bcere0005_56660 42 25 Op 3 . + CDS 48636 - 50417 216 ## PROTEIN SUPPORTED gi|225084369|ref|YP_002657150.1| ribosomal protein S16 43 25 Op 4 . + CDS 50386 - 50850 398 ## 44 25 Op 5 . + CDS 50857 - 51372 396 ## PPE_00168 hypothetical protein 45 25 Op 6 . + CDS 51369 - 51836 59 ## 46 25 Op 7 . + CDS 51833 - 52231 284 ## + Term 52263 - 52309 4.3 - Term 52256 - 52292 3.4 47 26 Tu 1 . - CDS 52396 - 52758 117 ## - Prom 52780 - 52839 2.3 Predicted protein(s) >gi|333604939|gb|AFDH01000102.1| GENE 1 968 - 1453 447 161 aa, chain + ## HITS:1 COG:BS_purE KEGG:ns NR:ns ## COG: BS_purE COG0041 # Protein_GI_number: 16077710 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase # Organism: Bacillus subtilis # 1 159 1 159 162 232 74.0 2e-61 MSARVGVIMGSKSDWETMKHACDVLDEFGIPYEKKVVSAHRTPDLMFQYAEQAAERGLRV IIAGAGGAAHLPGMVAAKTELPVIGVPVKSRALNGLDSLLSIVQMPAGIPVATVAIGEAG AANAGLLAAQIFGAFEPELQNKVRERRERIKAQVLEASELE >gi|333604939|gb|AFDH01000102.1| GENE 2 1450 - 2853 958 467 aa, chain + ## HITS:1 COG:BH0624 KEGG:ns NR:ns ## COG: BH0624 COG0026 # Protein_GI_number: 15613187 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) # Organism: Bacillus halodurans # 85 461 3 367 379 379 55.0 1e-104 MTAKNSGEETAKGKLNGSLTNSEGLNRAGQTDGSNFGTNGPTSLPTQSTSVQAPQAETGK ESKAETAVQDATAAAAGTSSMQHRVIPPGSTIGVLGGGQLGRMLALAGRNMGYRFVTLEP GADSPCGQVADRQIQASYGDVDAARELARVSDVITYEFENVDAAVTKLLTQEAYVPQGSA LLYTTQHRLREKRAIEAAGVRVAPYAEIASEEDLRVAVGKFGTPCVLKTATGGYDGKGQW VIRSADEIPDAFAELSRAGTDLVLEQFIRFEKEISVIAARSPRGEVKAFPAAENIHVENI LHMSIVPARISASVQEEAERLAIRIAESMKAVGLIAVEMFLTKDGELFVNELAPRPHNSG HYTMEACLTSQFEQHVRAICNLPLGPTELLTPVVMVNVLGEHMEPLLKWFCSEESAASDS GVTPKLHLYGKDEAKTKRKMGHINLLTDDTAKAAEWMERTGIWDSIS >gi|333604939|gb|AFDH01000102.1| GENE 3 2949 - 4244 1415 431 aa, chain + ## HITS:1 COG:lin1885 KEGG:ns NR:ns ## COG: lin1885 COG0015 # Protein_GI_number: 16800951 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate lyase # Organism: Listeria innocua # 1 430 1 430 430 703 80.0 0 MIERYSRPEMVNIWTEENKFKAWLEVEILSCEAWAELGVIPKEDVKELRAKADFDMDRIY EIEQETRHDVIAFTRAVSEKLGPERKWVHYGLTSTDVVDTALGYLLKQANEILEKDLLNF IGILKNKAIEHKHTAMMGRTHGVHAEPTTFGLKMALWYEEMKRNLERFRFAADGVQYGKI SGAVGTYANIDPFVERYVCEHLGTNPAPISTQTLQRDRHAEYMATLALIATSLDKFATEV RALQKSEFREVEEAFAKGQKGSSAMPHKRNPIGSENISGLSRVIRGHMVSAYENVTLWHE RDISHSSVERIILPDATILLNYMLNRFGNIVKNLTVFPENMKRNMQSTYGVPFSGRVMTK LIDKGFSREQAYDTVQPRAMQAWEEQRSFREIVENTAAITELLNAEEIEDCFNPSWHLKH VDTIFDRLGLK >gi|333604939|gb|AFDH01000102.1| GENE 4 4275 - 5168 990 297 aa, chain + ## HITS:1 COG:NMA0968 KEGG:ns NR:ns ## COG: NMA0968 COG0152 # Protein_GI_number: 15793925 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase # Organism: Neisseria meningitidis Z2491 # 19 295 9 287 287 246 44.0 4e-65 MGASVALSTAEHLIKAPLVYKGKVRELYDLGEHFLIVVTDRISAFDYVLDPAVPDKGNVL NTLSKFWFELTTPFMENHVVHCDVELLGDLVTEPALLKDRVMVTKKATRIPVECVVRGYI TGGGWRQYQETGMINGIRLPEGLRKNQVLEHPIFTPAAKNDVGHDEDITYDQMCELVGEK VTEQLMTKSVMLYTLAHTYCEHRGIILADTKFEFGFIGNELILIDEIFTPDSSRYWAKDK YELDTEIDSMDKEPVRTYLANSGWDKNSAPDPLPDSVVEETSRRYREILQRLTEETE >gi|333604939|gb|AFDH01000102.1| GENE 5 5511 - 5750 385 79 aa, chain + ## HITS:1 COG:SMc00494 KEGG:ns NR:ns ## COG: SMc00494 COG1828 # Protein_GI_number: 15965526 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component # Organism: Sinorhizobium meliloti # 1 78 2 79 80 93 60.0 9e-20 MKATVYVTIKQSVLDPQGNAVQGALHSMGFEEVGKVRVGKYLELELDTTDRAEAEERLKA MCEKLLANTVIEDYRFELN >gi|333604939|gb|AFDH01000102.1| GENE 6 5771 - 6466 795 231 aa, chain + ## HITS:1 COG:BS_purL KEGG:ns NR:ns ## COG: BS_purL COG0047 # Protein_GI_number: 16077715 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain # Organism: Bacillus subtilis # 1 227 1 225 227 310 62.0 2e-84 MKFAVLVYPGSNCDIDCYKAVEDTVGEPVDYVWHTATDLSEYDCILVPGGFSYGDYLRCG AIARFASVTQALVKAAEQGKYILGICNGFQVLTEAGLLPGALLRNRSLKFRCHSTLLKVV NNATPFTSDYAEGEVINIPIAHGEGNYYCDEETLRELQQNNQIVFRYETDTNPNGSVDDI AGICSKEGNIVGMMPHPERAVDEILGSADGKRMFTSILNAWREQHGTAVSR >gi|333604939|gb|AFDH01000102.1| GENE 7 6444 - 8687 2306 747 aa, chain + ## HITS:1 COG:BH0629 KEGG:ns NR:ns ## COG: BH0629 COG0046 # Protein_GI_number: 15613192 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain # Organism: Bacillus halodurans # 8 747 5 740 743 956 64.0 0 MAQQLAAKEPNAEQIAEQKIYKQMGVTDAEYDQICGFLGRKPNYVEIGVFSVMWSEHCSY KNSKPLLRRFPTTGERVLMGPGEGAGIVDIGDNQAVVFKIESHNHPSAIEPYQGAATGVG GIIRDIFSMGARPVALLNSLRFGRLQNDRVKYLFEHVVSGIAGYGNCIGIPTVGGEVTFD ESYEGNPLVNAMCVGLIDHDKIQRGVAKGVGNPVYYAGPATGRDGIHGATFASEELTSES EAKRPAVQVGDPFMEKLVMESCLELIDTGIVLGIQDMGAAGLTCSSAEMASKAGNGLELY LDEVPQREEGMTPYEMMLSESQERMLFVIDPKDEAQALEIFERWGVICAKVGKVTDDGRL KLFHQGQIVGDMPVTALVDECPVYNKPSAVPAYYTEQANTDTSRYEEVTDLNGALKSILG SPTVASKEWVYNQYDYMVRTSTAVQPGSDAAVVTIRGTRKALAMTTDCNSRYVYLDPEVG GRIAVSEAARNIVCSGGEPLAVTDNLNFGSPEKPEIFWQLEKAVDGMAEACRELSTPVIG GNVSLYNENAKGAIYPTPVVGMVGLIQDTDHITTQGFKNEGDVIVLLGETKAELGGSEFQ KVVHGVVEGCPPQLDLETEKRLHAGVLAAIREGLVASAHDLSEGGLAAAVAESSISGGLG ADVDFRTELRADHALFSESQSRILLSCRPEKREALIALLQQKNVQAEVIGTVTGTNVKVD INGKPAVQASISELRQVWKDAIPCLMQ >gi|333604939|gb|AFDH01000102.1| GENE 8 8672 - 10153 1579 493 aa, chain + ## HITS:1 COG:BH0630 KEGG:ns NR:ns ## COG: BH0630 COG0034 # Protein_GI_number: 15613193 # Func_class: F Nucleotide transport and metabolism # Function: Glutamine phosphoribosylpyrophosphate amidotransferase # Organism: Bacillus halodurans # 31 482 8 459 473 595 62.0 1e-170 MSDAVTSGKGLWTGSYYNEGHGGHDGLFDKLKEECGVFGVFGHPDAASLSYYGLHALQHR GQESAGICTADADNFHYFRGMGLVKEVFDQSNLPTLVGTSAIAHVRYSTAGESKLANAQP LVFKYREGDLAVATNGNLVNAGEIRRQLEKQGSIFQTTSDTEVVAHLIARSKHDDIVDAV KDALQQVIGAYAFLILTKDKLIAALDPNGLRPFAMGRLGDAYLFASESCAFDIVGGTYMR DLLPGELLVLDKSGLTEDRFTESQTRATCAMEYIYFARPDSDIDAINVHSARKRMGKRLA SEAFVDADLVTGVPDSSTSAAIGFAEQTGIPYELGLIKNRYTGRTFIQPSQELREQGVKM KLSAVRKVVEGKRVVMIDDSIVRGTTSLRIVNLLREAGATEVHVRISSPPFQNPCFYGID TPSRKDLIAAQKSIEEIRQAINADSLYFLTQEGLIDSIGRKDGVENGGFCTGCFDNRYVT YVNDSEDAVGCGC >gi|333604939|gb|AFDH01000102.1| GENE 9 10277 - 11317 941 346 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169632702|ref|YP_001706438.1| phosphoribosylaminoimidazole synthetase [Acinetobacter baumannii SDF] # 4 345 13 348 356 367 55 1e-100 MSEAYKKAGVDIAAGNEAVERMKKHVQRTFRPEVLTGLGGFGSLFSLNKDKYEEPVLVSG TDGVGTKLKIAFAMDKHDTIGIDAVAMCVNDIVVQGAEPLFFLDYLACDRVIPEKIEAIV KGIADGCAESGCSLIGGETAEMPGMYTQGEYDIAGFTVGIVDKKKIIDGSTVRPGDAVIG LASSGVHSNGFSLVRKLLLEEKGHSLTDTIDELGGVLGDVLLEPTKLYVKPVLGILEQVG IKGAAHITGGGFLENIPRTLPEGVNVNIQYGSWPILPIFSLMQREGNITNNDMFRTFNMG IGMVIIVAQEDAEKALEIAASHGHDAYRIGEVTEGGKIVTFEGAEV >gi|333604939|gb|AFDH01000102.1| GENE 10 11319 - 11957 650 212 aa, chain + ## HITS:1 COG:BH0632 KEGG:ns NR:ns ## COG: BH0632 COG0299 # Protein_GI_number: 15613195 # Func_class: F Nucleotide transport and metabolism # Function: Folate-dependent phosphoribosylglycinamide formyltransferase PurN # Organism: Bacillus halodurans # 5 184 3 182 188 209 54.0 2e-54 MGKLRIAVFASGSGSNFQAVADAVRSGRLEAELALLVSDRPQSKVVERAKQADVPVFAFS PKAYDSREVYETEILQLLREKEIDLIVLAGYMRILTPVLVEPYYGRMINVHPSLLPAFPG IKGIDQALEYGVKVTGVTVHYVDGGLDSGPIIAQRALEIREDDTVDSLTGRVHAAEHELL PLAIGWIAEGRVTLEGRLVRISEPKTAEAAEQ >gi|333604939|gb|AFDH01000102.1| GENE 11 12046 - 13590 1874 514 aa, chain + ## HITS:1 COG:BH0633 KEGG:ns NR:ns ## COG: BH0633 COG0138 # Protein_GI_number: 15613196 # Func_class: F Nucleotide transport and metabolism # Function: AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) # Organism: Bacillus halodurans # 4 514 3 511 511 658 67.0 0 MAIKRALISVSDKTGIVEFASELAKLGVELISTGGTKTLLEKEGVPVIGISDVTGFPEIL DGRVKTLHPAVHSGLLAIRDDAEHRKVMEELGLGYIDLVIVNLYPFAETIAKPDVEYADA VENIDIGGPTMLRSAAKNHAFVSVVVDAADYDTVLAEVRETADTTLETRKRLAAKVFRHT AAYDSLISEYLSGQVGEEFPERYTVTYEKVQDLRYGENPHQKAAFYRKPLAGEGSIATAE QIHGKELSYNNINDANAALQIVKEFTEPAVVAVKHMNPCGVGIGTSVKEAYEKAYAADPT SIFGGIIAANRPIDGETAQLLHEIFLEIVIAPDFTPEALDILQKKKNIRLLKLGNFTEGQ RKALHLVTSVEGGMLVQESDVHAISEGDLKTATDREPTEAELKQLLLAWKVVKHVKSNAI VLVTEDMTIGIGAGQMNRVGAAKIAIEQAGEKAKGAVLASDAFFPMGDTLEIAAAAGITA VIQPGGSIKDEESIKVANDKGVAMVMTGVRHFKH >gi|333604939|gb|AFDH01000102.1| GENE 12 13610 - 14878 1583 422 aa, chain + ## HITS:1 COG:BH0634 KEGG:ns NR:ns ## COG: BH0634 COG0151 # Protein_GI_number: 15613197 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylamine-glycine ligase # Organism: Bacillus halodurans # 1 418 1 417 428 422 52.0 1e-118 MRILVIGRGGREHAIVWSLRKSPKVTALFCAPGNGGIAELAECVPITEFQFAEIAEFVRQ NAIDLVVVGPDDPLYEGIVDYLEEHGIRAYGPNRAAAEIEGSKVFMKHLLKKYEIPTAAY EAFEDYEAALAYLRKLGAPIVIKADGLAAGKGVIVASTLEEAEKALKEIMVEKQFGASGN RVVIEEFLQGQEMSLLAFVDGNVVKPMVPSQDHKPVFDGDKGPNTGGMGTYSPVPHIPQE IVQQALDTIVKPAAEAMVKEGRPFRGVLYAGLMITADGPKTIEFNARFGDPETQVILPRL KNDLLEIILATLEGRLADLEIEWSEEAAVCVILASGGYPGSYPKGLPIEGLDAAGGALVF HAGTALEDGRLVTSGGRVLGVTALGRDIADAREKAYAAADRISFEGKQNRTDIALKALNA MK >gi|333604939|gb|AFDH01000102.1| GENE 13 15291 - 15443 179 50 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGTIGTFIRGHWIPIVMILGCLFAIYFVYSKRNELQLYWLNKREARKRKS >gi|333604939|gb|AFDH01000102.1| GENE 14 15754 - 16980 1072 408 aa, chain + ## HITS:1 COG:PA4016_1 KEGG:ns NR:ns ## COG: PA4016_1 COG4642 # Protein_GI_number: 15599211 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Pseudomonas aeruginosa # 171 372 51 234 359 66 30.0 1e-10 MKKLVYGLTMMLALFLLPLAASAASGTQLQVNDKAIGLSAEPQISGDTAYVDLAPVLGSL GYTVQQSVYGTGWTVSKDGSKIELVSGSSSFVVNGESVKAGATVIQGGNKLNLQAFADLT GRKLKVDGEKGLISLNDTLQTSVLETLYTGTLTSSAQAPKALAQGNQGYTGYIKIFYPNG KVFYDGYMVNSKFEGKGKYYDSNGVLRYDGNWKDNKFHGQGKSYYADKHLEYDGMWKAGL KQGYGTYYWAWEPCGEPPGSITGYNKYVGFFDKDEFDGVGKIDWADGSKFEGFFSKGQIK CAGVFYWTDGWKYVGMYKDGKRDGFGTEYNEKGTVIYEGGFRQNLAEGYGRLYDAKGNLL YEGEFVNGHPKGEATARTLTGFQAQSNQKSSEAQLQMHTQNQMEVTFQ >gi|333604939|gb|AFDH01000102.1| GENE 15 17052 - 17480 418 142 aa, chain - ## HITS:1 COG:BS_yuxK KEGG:ns NR:ns ## COG: BS_yuxK COG3011 # Protein_GI_number: 16080202 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 9 141 4 136 137 175 57.0 2e-44 MKAPLHGPEAISGPVVLFDGVCNLCNAAVRFTVRRDPAGRVRFAALQSEAGQRLLARHGL PAASFDSFVLIEGGRIYTQSSAGLRVLRRLRYPWPLLYGFVAVPKPIRDAVYRWIARNRY RWFGQRDACMVPTPELRRRFLD >gi|333604939|gb|AFDH01000102.1| GENE 16 18025 - 18582 249 185 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|167464334|ref|ZP_02329423.1| ## NR: gi|167464334|ref|ZP_02329423.1| hypothetical protein Plarl_17559 [Paenibacillus larvae subsp. larvae BRL-230010] # 78 184 189 301 301 91 48.0 3e-17 MFSPGQAGGQGGGPFQGGGFPGGGFSDGGFPGGGFAGGGLPGGGFSGGGFPGGGGFPQGG PGFSGFGQNLPVPANSAAPAAAAGSSGGGAGGLLGGMNINQIKGFIDRMGGIEGVIGTMG KVQKFVGSVQQFAPMLKLMFSGFGAKAATKRANTVPAAKRKKKRKSTQTKRKGKTTKRRT RSSRR >gi|333604939|gb|AFDH01000102.1| GENE 17 18922 - 19212 312 96 aa, chain + ## HITS:1 COG:BH0639 KEGG:ns NR:ns ## COG: BH0639 COG4496 # Protein_GI_number: 15613202 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 1 94 1 94 100 138 74.0 3e-33 MQLKKLNDKAIDQLFEAILTLNSLEECYTFFDDLCTVNEIQSLSQRLEVARMLRKGCTYN QIEAETGASTATISRVKRCLNYGNDGYVLTLDRLNR >gi|333604939|gb|AFDH01000102.1| GENE 18 19701 - 20489 806 262 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_0881 NR:ns ## KEGG: Pjdr2_0881 # Name: not_defined # Def: cobalamin (vitamin B12) biosynthesis CbiX protein # Organism: Paenibacillus # Pathway: not_defined # 5 253 4 254 257 262 54.0 1e-68 MRTYGILVISHGSRSREWVQLVDEAVAGMRVPDGVPVFGSFLELVDGRLIQDGITWLENR GVTDLIVIPLFVSKGSTHLDEIAYALGLKPEPLLPTDLEPFDIKARVHMTPPMDEDAELL AEMVYEKIRSLSEDPEREIVLLVGHGSVEQLFHLAWRGSLERIAQALKKTGGFGTTDVAM LLPDQTKRKLEWWQERKPGHAVIIAPLFLSEGYFTREVIPSRLEGFDYRYNGQSILPSPK VSEWLERQVASFFNRDHYEQKR >gi|333604939|gb|AFDH01000102.1| GENE 19 20499 - 21428 966 309 aa, chain + ## HITS:1 COG:BS_yerQ KEGG:ns NR:ns ## COG: BS_yerQ COG1597 # Protein_GI_number: 16077740 # Func_class: I Lipid transport and metabolism; R General function prediction only # Function: Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase # Organism: Bacillus subtilis # 3 293 2 293 303 363 59.0 1e-100 MAKRARLIYNPTSGREEMRKRLPEILQRLERGGYETSTHATIGEGDAMLAASQAVDRGFD LIVAAGGDGTLYEVVNGMGEKPNRPPVGILPLGTTNDFARALNIPRDWEDAVDLIVRGYT RPIDVGKVNQKYFINIAGGGSMTELTYEVPSKLKTMIGQLAYYVKGLEMLPRLRPIHMHL KSDEMEINEDVMLFLITNSNSVGGFEKLAVDASLNDGLFDVIVLKKCNLPEFIKIATMAL KGDHTNDPNVVYFQTSKLEISSPDYVQINLDGELGGTLPAVFTNLQSHIEIIVDESGLST YKHQRRLGS >gi|333604939|gb|AFDH01000102.1| GENE 20 21875 - 23926 1338 683 aa, chain + ## HITS:1 COG:BH0687 KEGG:ns NR:ns ## COG: BH0687 COG2265 # Protein_GI_number: 15613250 # Func_class: J Translation, ribosomal structure and biogenesis # Function: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase # Organism: Bacillus halodurans # 325 668 111 454 458 489 68.0 1e-138 MKPYGEVTARGEGSGSRESGGRARAERTSAPQAGSKRSAALAGLPVEKNGEYTAEIIGIG HDGEGVGRVEGFTLFVHGALPGERVRLKVLKLKKQYGYAKLLEVLESSPDRVGAPCPIYD KCGGCQLQHLDYAAQLKVKRQLVVDNLERIGKLKVAKEADAEAGNAVGDASVLRAGMVDG NTTPTSESFKPTDEEITVPEDKVINDEALESKEDADDTISGSGLQPLMDTEFVDASDLLK DESDSAGDSRGQGQTNDSENIKWDNTIGDNAVGGNTALGTGAAIGTSSIGDVRENIGEST LAAGVKRTSLRRGESADSLKQESARASEADGIVVYPTIGMSDPWRYRNKAQVPFGEEQGG LVGGFYAQGSHRIIDMETCLIQHANNDEVIAKVKEIGRGLGIRAYQEETHEGLLRHVVVK VGFRTGEIMVVLVTNGKEIPHVEEWIEKIRATIPGVASICQNINTGRTNVIFGATTRVLW GHEVIYDYIGDVKFAISARSFFQVNPVQTEALYGKALEYAGLTGGETVVDAYCGIGTISL FLGKHAKKVYGVEIVPEAIEDAKRNAELNGIRNAEFAVGGAEDVLPEWQRAGVRPDVIVV DPPRKGCDERLLDTILQLCPERVVYVSCNASTLARDLRVLEDGGYRTVCVQPVDMFPHTV HVESVALLVRDGTVKVTQSHPKA >gi|333604939|gb|AFDH01000102.1| GENE 21 24183 - 24338 115 51 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFAQLDIDDEQVLKQLLHQVIQKIEVHQDGTIKIHYNIAHPQVMGDLLLGA >gi|333604939|gb|AFDH01000102.1| GENE 22 24306 - 24455 102 49 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLVINVKLCKQRNFLLKGTELLFRVFLCFENGFQFRFAFGKGLLFFLIP >gi|333604939|gb|AFDH01000102.1| GENE 23 25290 - 26270 87 326 aa, chain + ## HITS:1 COG:BH3399 KEGG:ns NR:ns ## COG: BH3399 COG2334 # Protein_GI_number: 15615961 # Func_class: R General function prediction only # Function: Putative homoserine kinase type II (protein kinase fold) # Organism: Bacillus halodurans # 1 324 1 326 329 167 31.0 4e-41 MMKLSNMVKGLASDAVAKSLIQNWEHDEGTLMFWRASSNFVYAFENKQEKYFMRFSYDQE SSIEQITAELEFMEYLKSNHYPCVSPILSVNGKYIETVQNSERTYFAVVFNSARGATLDE NITKVQCEDWGSSLASLHQLSRLYEPVSTKRFNWQDILRKVDAVLQAYPDEKEAIEEIVI LTERLQSFPISNCNYGLIHYDFQLDNIFYEEENRLFSVIDFDDAVYSWYAHDIITALDDF LDGDMNLDNHQVKSFLKGYSSVIPLSDEDINQFPYFQRFMKLYRFSKLLWSLEGSDVTDA PKWLDDVKLKFARVRDELRRGFQEQD >gi|333604939|gb|AFDH01000102.1| GENE 24 26408 - 26497 71 29 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MAIVRLATLDVLDELIQMRWDFSSGGLWA >gi|333604939|gb|AFDH01000102.1| GENE 25 27464 - 28090 67 208 aa, chain - ## HITS:1 COG:no KEGG:Closa_2787 NR:ns ## KEGG: Closa_2787 # Name: not_defined # Def: helicase # Organism: C.saccharolyticum # Pathway: not_defined # 26 208 1506 1682 1683 106 35.0 6e-22 MQRLQDDHLHESISIEVIESPLPNDDQSYDNPYSFDYYEETNVYEVKRPSDDTTYLKNVI KHVVQKEYPIHFELLCKRLVGLFGNQKVTVKVRDSVNYVIDRYLTDKLDRRDGFLWIKEA ENIKARVPLSTDVGVRTIAHISKEEIAEAMLQIVSKSIGITTNDLYLVTARAFGFSRTGG NINLAMQQACEYLIQSGVVKNQNGKIIV >gi|333604939|gb|AFDH01000102.1| GENE 26 31071 - 31259 79 62 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLSAAAEAVSSFVVTVDSSFMIDLANFITSFSVEKLPEFKTGLMAKVFVWSCDFLASAGI VK >gi|333604939|gb|AFDH01000102.1| GENE 27 32185 - 32994 154 269 aa, chain - ## HITS:1 COG:MA3490 KEGG:ns NR:ns ## COG: MA3490 COG1112 # Protein_GI_number: 20092301 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases and helicase subunits # Organism: Methanosarcina acetivorans str.C2A # 1 229 8 269 1939 102 30.0 1e-21 MATIDVRIDKWKKRLLDLGKKNRLINYRETKRSNIKIVNPDLSELFSLLVVNETTLEFPF SFEELEDDDDEAAEPFTSLGDIQTNQSIKEQQRTLRNLRNKAKTALEEQGVNILYLTFGF LKWKESLDSDQTITSPIVLVPVTLTLESITSPFVLRLHEDEVVINPTLKYKLEHEFGVIL PEFDAHEESITDYLTTLSKTVVKNKWEVAFETGLSLLSFLKINMYEDIDKNQEKLRPIPF FSGYLETELKSTHCQLNSITMIMIRKYVL >gi|333604939|gb|AFDH01000102.1| GENE 28 33491 - 34159 267 222 aa, chain - ## HITS:1 COG:BS_yvzB KEGG:ns NR:ns ## COG: BS_yvzB COG1344 # Protein_GI_number: 16080568 # Func_class: N Cell motility # Function: Flagellin and related hook-associated proteins # Organism: Bacillus subtilis # 94 221 31 160 160 102 47.0 8e-22 MTGTVANAGIQFPLGSVSPTELSIDNPAAGQPQVNFNWQLTVPSGSSVTFGFKYGPFSLN YEPFEQTQETVETKHIETTVNTDITDIDYLPPKLTIQAGANKDETLVIPLFNVGTQGLGI KDLGLLPPSIPEQALAKADGAIEKVLHYRAMYGALQNRMEHTLNNVNNSAENQMTAESRI RDADMAKEISNMTKSNMLMQAAQTMLAQANQHPQAVLQLLKG >gi|333604939|gb|AFDH01000102.1| GENE 29 34692 - 34874 73 60 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFVFENVWVVSDVSELLITCLASSGVPRGLNTIVLFIEDTGGGSLAEKALMLLERSANIL >gi|333604939|gb|AFDH01000102.1| GENE 30 35624 - 36901 409 425 aa, chain + ## HITS:1 COG:no KEGG:Fluta_0804 NR:ns ## KEGG: Fluta_0804 # Name: not_defined # Def: hypothetical protein # Organism: F.taffensis # Pathway: not_defined # 5 418 10 427 433 131 27.0 7e-29 MHIQKFRRELTLGLGRIILYLKETPALTYRHLDAIADACIRSTAYDPQCDESREAYLWEV IQLSKASSILQERILDALGGEVNGWDLLQVYRLAKIFASHGNPTAVDAMKKGFRYDEEWN CFIGGAEIIEAEGARGFLFVAKEVGKRILSSGYEGGTFVWEFAKEFLGEEKAAALLEESA NDERIQAFYQSALRDEDDYSLLNGRKALSYDEFKSSIEAGEKARYPYIRWGMHASKEDLF KAADDLLKEEHPKKLEAYLFIFAKTAFPLDPQKIIELAQSGNKRLRSAAIHALRNLKDER IHRLAVELIHQRETEMEALELFTLNYEENDLPLLERIAFKKHHKHSFHNMELDMVDIFEN HPTATCQKIMIELYHKGLCTLCRRRAVEIMLANHILPASLRDEIRYDCNPDIRDLWMKSA SAGLP >gi|333604939|gb|AFDH01000102.1| GENE 31 36915 - 37202 206 95 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_0300 NR:ns ## KEGG: Pjdr2_0300 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 1 95 1 95 95 98 61.0 6e-20 MSRSVKKSPVFKDQQHLNTGWTKRQAGKAVRRFRGVVQNGKWYRKLYCPWNICDYRSYQT KQQAVHEWETSKWLREQLLTHTEVIKDWEKFHKRK >gi|333604939|gb|AFDH01000102.1| GENE 32 37374 - 38090 340 238 aa, chain + ## HITS:1 COG:BH0476 KEGG:ns NR:ns ## COG: BH0476 COG0491 # Protein_GI_number: 15613039 # Func_class: R General function prediction only # Function: Zn-dependent hydrolases, including glyoxylases # Organism: Bacillus halodurans # 1 225 3 228 289 174 37.0 1e-43 MELRRLTDRVFYTMFSKESDRPVLGYINGQKRSLMVDSGNSKFHVASFNEAVRKEGLREP EIVAITHWHWDHTFGMHAVEGMTIAHEKTNDKLAKQAKWEWTDTEMKKRLASGVEIEFAD TCIRNEYPSLSDIRVVTSDISFNGTMEIDLGAITAQLHHVTSPHSDDSVCILVPQERVLF IGDAVGVDYYKDCYLDKDKLRSLLTAIEGYDFDTCVVGHAEPVSKQKIVAVMHSLLER >gi|333604939|gb|AFDH01000102.1| GENE 33 38168 - 38881 702 237 aa, chain + ## HITS:1 COG:no KEGG:BPUM_0832 NR:ns ## KEGG: BPUM_0832 # Name: not_defined # Def: hypothetical protein # Organism: B.pumilus # Pathway: not_defined # 90 233 4 144 144 103 40.0 7e-21 MDKIETVLTKQGKTFKTYYHLMLTEATQVCIINIVKGRLYADKKTMNPVYEPYPTKGEAI KRMEELAGELKSKGFVEEPRDVLFQIPEKEIVVFDKAKWHYEGDFPSELDRFQAYVPTGM FIAWLIKNDLTNKRSRKEDAPEIELVKRDEMTGAEFYRTNWDGVFSSKELSEEAEAFARE YLDIRNDVYTAVDYTNVLAAGLPTIYHAEDSLENYRIIEPIITERYRDWKSRQGSLA >gi|333604939|gb|AFDH01000102.1| GENE 34 38985 - 39083 111 32 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSKRSKISFLIGMAVVLLFVMSGCGSKEKPKG >gi|333604939|gb|AFDH01000102.1| GENE 35 39197 - 39544 298 115 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_1331 NR:ns ## KEGG: Pjdr2_1331 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 5 115 77 187 187 137 62.0 1e-31 MTSSIWNDGFVNVGFYTSRGTGSTGQTLDMDFTMERLGKAMEKKAEYDTYIQGLDAKYDD VKQVWAKLSKETDSLYKQLKENTPKANDKGYKFDTGLFDQYSSAFRDDVRALNKK >gi|333604939|gb|AFDH01000102.1| GENE 36 40356 - 41861 1615 501 aa, chain + ## HITS:1 COG:no KEGG:Haur_1146 NR:ns ## KEGG: Haur_1146 # Name: not_defined # Def: TROVE domain-containing protein # Organism: H.aurantiacus # Pathway: not_defined # 1 497 19 546 546 353 39.0 1e-95 MSMAKKLFGSRRPDAYNKDNYPAYTRSAEERYVQTLLTNTMGNTYYADQQELLGEAAQLH HEMAEANPNFMARALVFARNAGFMRLQPLFGLAILSMYRPDLFAKIFRQVVRIPSDLSDF LTILNGLGRGEGGRAVKRQVNRFLSEVSEYWALKYNGRGRGYSLGDAIATSHPKPKDLQQ QALFRYLRGMEANLALLPQVEALESLKLAATEEEQIGWIERGKLPYETVTGAIRPSKAVW EALLYQMPTFALLRHLNAMQRAGVLEDARHVEYIVQRLTDPQALSKAKILPFRLATAFRQ VEHPELRDALREAAELTFDNLPELGDQTAIFLDISGSMNGQYLEIGGVFALALYKKTRGN SLFWLFDTEVMDAKPSRKDSILTQAAQIRARGGTDTGAPVRKLIRERKKVDQIVMITDEQ QNSGSAFYKELKRYRSKVNRDVKAFIIDLAPYRHAMVPVQDPHTYYIYGWSDTVLSYIAQ SVQGYSSLTEQVAELDLDHLH >gi|333604939|gb|AFDH01000102.1| GENE 37 42261 - 43211 922 316 aa, chain + ## HITS:1 COG:BH3890 KEGG:ns NR:ns ## COG: BH3890 COG0614 # Protein_GI_number: 15616452 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-hydroxamate transport system, periplasmic component # Organism: Bacillus halodurans # 14 316 19 308 308 346 58.0 3e-95 MKKLIPLSLFLVLLLSACGGNQAGTKSGNNASSDSSGTASAASKSGTFTYESENGPVEVP SNPQRVVVLTRFLTGNVMALGVPLVGVDEMSKENPNFEEKLKNIEAVSDESLEKIIELKP DLIIGLSDIKNIDKFKKIAPTVTYTYGKVDYLKQQLEVGKLLNKEKEAQAWVDDFKARTQ KAGDEIKAKIGADATVSVIETFNKQLYVYGDNFGRGTEILYQAFGLRMPDKVKEATKKEG YFALSTEVLKDYMGDYVIFSKNAEEDNSFQKTETYKNIPAVQNNRVYEADAKAFYFNDPL SMEYQLKFFMQHFLGK >gi|333604939|gb|AFDH01000102.1| GENE 38 43656 - 45035 1568 459 aa, chain + ## HITS:1 COG:CAC0727 KEGG:ns NR:ns ## COG: CAC0727 COG1113 # Protein_GI_number: 15894014 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Clostridium acetobutylicum # 1 458 1 460 460 607 71.0 1e-173 MEAKSLSRGLKPRHIELIALGGTIGVGLFMGSASTIKWAGPSVLLAYLLAGIIMFFVMRI MGEMLLLEPVTGSFATFAHRYIGPLAGYVTAWSYWFLWVTVGMAEVTAIGIYVGYWFPDI PQWIPALIGVGIIAAANLAAVKFYGEFEFWFAMIKVVAIVFMLVIGTAMIFFGFGNGGEP IGLSHLYSHGGFFAGGLKGFLFALCIVTAAYQGIEMVGITAGEAENPKHTLRKAIKNIIW RILIFYVGAIFVIVTIYPWNQVGEIGSPFVMTFAKVGIVAAAGIINFVVLTAAMSGCNSG IYSAGRMLYTLAQNGQAPKFFGKVSKSGVPRNSIITTISLLLIGVLFNYLAPDSKLFLYI YSASVLPGMIPWFALAFSQFKFRKKWKHEMAEHPFKSRFFPVSNYITIVFLFLVIIGMWF NPDTRVSLIVGAVFIAVVIAGYYVFGIGKRQKTGEIEEG >gi|333604939|gb|AFDH01000102.1| GENE 39 45158 - 47632 1564 824 aa, chain - ## HITS:1 COG:VC0622_1 KEGG:ns NR:ns ## COG: VC0622_1 COG0642 # Protein_GI_number: 15640642 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Vibrio cholerae # 368 608 494 739 769 172 39.0 3e-42 MNGIHRLEQWQYYWGDFPRPPDRLYALQPPSMPDELVWRSVGGDRTFEERRNAPNIYWLR AVWPQENWRDPALYLLLYGNYEVYADRQLVYKHGEISLTGEPSYAATPRRLISMPSDMAG KTVLIRVQSLKDRNGPRGIIWAGEKSDITVALLKKDAFRLTLGFTYTCTSLISAFLPLRS KKYAILLPFSWFTAAMGIYLTSRTDVKSFFWDAPLAWTYIELFSLFLGVTGFVYFIRKLL GVGRHKLVQRMWQSSLLYTLCASVVLWRGWATPVPLLTIFLYFIIAAGTFLLFWVGIQSI RQRKEASRIFFGSVLFIGCGIFDSLSFSVWKSSPFTLLPAGLLLFLIILIDVLRLKMAGT LRAYAEELERKNQELNELDRLKDRFLANTSHELRTPLHGIIGIAQSLLVQTQSPHRQSLE LIISNAGRLNHLIHDILDLRSSKDSQLSLQKQWFNLKTTIDGVCRMYQSLAKPSVRLLNE VPDLYIFADESRVHQIVGNLVGNAVKHTDLGFIRIGTSHREEKAFITVEDTGTGIPAEHL EHIFEEFFQLKTAANRGWKGSGLGLPIARRLAELHDGDIVAHSVAGQGSTFLCTLVTPKF ETEDLPEAPHVPGNAEAACALADAIQPSTQATILIVDDEETSQHVIKGLLGPIHAWRLHF ASSGEEALDLLHTLVPDLIVADVMLPGMDGFELCRTIRESPPVEDLKIIILTAKGREEAY KGYEAGANEYLPKPIEPYELILRIQAHLHARFFLRKEKQKELTERQVQFLSLAWEQPEIS KEVLANQLFVKYETLKKDVKKINQYFESPSYVEAAVMAKRRNII >gi|333604939|gb|AFDH01000102.1| GENE 40 47938 - 48075 76 45 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSCVFAYSVCSGTCSWYPGTLRNKSIYYVETSTGNPCGSEDGGCC >gi|333604939|gb|AFDH01000102.1| GENE 41 48166 - 48639 357 157 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229182361|ref|ZP_04309630.1| ## NR: gi|229182361|ref|ZP_04309630.1| hypothetical protein bcere0005_56660 [Bacillus cereus 172560W] hypothetical protein bcere0005_56660 [Bacillus cereus 172560W] # 21 149 58 186 190 79 32.0 1e-13 MQSPVKKELPDFLKPQNHWMIGDYLPNITIDPQSSLKLYDLIDRYLIVAVVSTTCAPCLE AMEIVNEFIESFPGYRLVILIETDDETFERAKEAFHESALLYHVPDRVLVEELKIFGYPW SYGINIEGQIIAHATCGVRRMFMNVVEPFHRFHREIR >gi|333604939|gb|AFDH01000102.1| GENE 42 48636 - 50417 216 593 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225084369|ref|YP_002657150.1| ribosomal protein S16 [gamma proteobacterium NOR51-B] # 336 567 9 233 309 87 31 1e-16 MKSFWFWFRLMVQGSLRLVFLIAAVLALLPLAGWAGFQLNKQLFDGIAQFRGWSPLVSIA CVIAAVKLLEAVLNYLSRLLDEHLSMRVVYRLEHYLYSRIQPATITSVETPEYMNDVNLA RNHMHNVQQLINSMISLAQQVLQLGMYGYLIVEYSWLAFAVLVAFALPNFIFETLQAFKI ETHLRNISQYQMSSRLMSDMLVRPQTLRETMIFGAKNFLFNHWKRAALEVIGKTMMLKTY EFKWRSGLGIFQPAGVLIIQMILIRKLVQSSITLGDYVAITTAVASVETSFLAMSYHMRL FKQIPLLTERFSKFISSYVQVPEGLQSLPQPGMERMEIRGLSFIYPNMGQPVLRDIDLDV QHGDVIAIVGENGSGKSTLGKVITGLHEVPPGTVFVDGADINALDREEWFRLISVVNQDF MRYPLSVYENIALEEPSEEVKARVDRLIQRYPALVPAAIREDLTIRLGTEFFHSRQISGG QWQRIAIARALYKESPVLLLDEATSELDPAVESDLIRQILQERQGRTTILVTHNLTLAAL AARIIVMHHGRVEETGSHHTLLREKNRYYEMWNKQHSQEGVVEYGQNQLSGIV >gi|333604939|gb|AFDH01000102.1| GENE 43 50386 - 50850 398 154 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MGKISFRELFSREAAEDEFLPRHLRGKPAPPQRLGDPFVHEELPLDLMTVPDAMVGFISL TCKSCIELLPEVKDFTEAYTGTFILASSGSAEENRMMADSLEFMFPVLTVSDDVKNQYGI KSTPYALRLQYGIISGGFPIHSMQDLHDALRPEE >gi|333604939|gb|AFDH01000102.1| GENE 44 50857 - 51372 396 171 aa, chain + ## HITS:1 COG:no KEGG:PPE_00168 NR:ns ## KEGG: PPE_00168 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 4 118 5 118 172 77 37.0 3e-13 MYWLAFSADLILSLVFFASFYTKAPNMANFRLSIASYRVLPGRLLTPAAYTVLAAELILF AAYMTGALSFWKEGVSALLLFAFTALLLVKRRKKAGEDGACSCFGTVEWLNRYPATRNGV LLSLIAAKTLVPVATRPLELGLALTLTVTGLWLAGDVFITARREKELRIQG >gi|333604939|gb|AFDH01000102.1| GENE 45 51369 - 51836 59 155 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSIILFGLCASVIVLYTLLRKKRRRLQHREKKILAGALADLGIPSSEDVVLLALHYTDSV YKTIDAILSGQPANRRHLVVVFDGPLWLVQLKAKSWSGCTRVIPMHTPKTSGWSGLMRGS SELLHWNGRELKRYSEIELFLETDEKNFSLKEGAS >gi|333604939|gb|AFDH01000102.1| GENE 46 51833 - 52231 284 132 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNAVLSGQLVVAERVWSNEQTKELSIENIRNYVKVNTYPSVAVLEIWVKLWILEPGDRSV YLKTYSPQGKSVWEYEFKKVKNMRNEKMPPGIDFYVKMRFVVQDEGVYRVVMHDRHSNLI AEHPVFISADEI >gi|333604939|gb|AFDH01000102.1| GENE 47 52396 - 52758 117 120 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIQTSMMRREEPGDYLIIKLGEEVWFYESGYFIVRGAQRSFLTITEARLFHLFLQRPNER IFIEELIEHLERFSPCAFTEQNVYVHINRIRKKIEENPKQPRLLLNTRPGYLLSIEERGG Prediction of potential genes in microbial genomes Time: Sun Jul 17 09:59:23 2011 Seq name: gi|333604899|gb|AFDH01000103.1| Paenibacillus sp. HGF7 contig00056, whole genome shotgun sequence Length of sequence - 39149 bp Number of predicted genes - 40, with homology - 37 Number of transcription units - 20, operones - 10 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 100 - 159 2.8 1 1 Tu 1 . + CDS 225 - 1769 1537 ## COG2508 Regulator of polyketide synthase expression + Term 1775 - 1815 11.5 + Prom 1807 - 1866 1.7 2 2 Op 1 . + CDS 1933 - 2592 745 ## COG4126 Hydantoin racemase 3 2 Op 2 . + CDS 2602 - 3525 952 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily + Prom 3530 - 3589 1.6 4 3 Tu 1 . + CDS 3685 - 3765 79 ## 5 4 Op 1 . + CDS 3910 - 5514 1829 ## COG1297 Predicted membrane protein 6 4 Op 2 . + CDS 5525 - 6586 1427 ## COG3535 Uncharacterized conserved protein 7 4 Op 3 . + CDS 6639 - 7571 1172 ## Dd703_0255 hypothetical protein + Term 7590 - 7624 5.1 8 5 Op 1 . + CDS 7658 - 8329 648 ## PPE_01437 hypothetical protein 9 5 Op 2 . + CDS 8427 - 9374 974 ## COG2309 Leucyl aminopeptidase (aminopeptidase T) + Term 9437 - 9493 16.5 - Term 9425 - 9481 13.5 10 6 Tu 1 . - CDS 9488 - 10759 1028 ## COG0642 Signal transduction histidine kinase - Prom 10887 - 10946 2.7 + Prom 10851 - 10910 6.3 11 7 Tu 1 . + CDS 10932 - 11525 581 ## COG1309 Transcriptional regulator + Term 11737 - 11789 1.5 + Prom 11556 - 11615 4.7 12 8 Op 1 21/0.000 + CDS 11818 - 12834 1171 ## COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components 13 8 Op 2 5/0.000 + CDS 12854 - 13720 1034 ## COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component 14 8 Op 3 . + CDS 13799 - 14710 940 ## COG2175 Probable taurine catabolism dioxygenase + Term 14948 - 14993 1.0 - Term 15167 - 15209 3.4 15 9 Tu 1 . - CDS 15235 - 15909 593 ## COG2968 Uncharacterized conserved protein - Prom 16021 - 16080 4.4 + Prom 16024 - 16083 5.2 16 10 Op 1 . + CDS 16116 - 16676 685 ## BBR47_39740 hypothetical protein 17 10 Op 2 . + CDS 16742 - 17533 258 ## BMD_1640 trifolitoxin immunity protein (EC:2.7.-.-) 18 10 Op 3 . + CDS 17576 - 18088 655 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Term 18092 - 18120 1.4 + Prom 18229 - 18288 5.1 19 11 Tu 1 . + CDS 18418 - 18957 629 ## GYMC10_3100 GCN5-related N-acetyltransferase 20 12 Op 1 31/0.000 + CDS 19164 - 20033 1099 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 21 12 Op 2 17/0.000 + CDS 20067 - 20849 1061 ## COG0765 ABC-type amino acid transport system, permease component 22 12 Op 3 34/0.000 + CDS 20839 - 21549 885 ## COG0765 ABC-type amino acid transport system, permease component 23 12 Op 4 2/0.167 + CDS 21546 - 22298 679 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 + Term 22386 - 22428 -0.8 24 13 Op 1 1/0.167 + CDS 22441 - 23508 1198 ## COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases + Term 23516 - 23558 5.0 25 13 Op 2 . + CDS 23595 - 24788 1263 ## COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase 26 13 Op 3 . + CDS 24797 - 25945 1208 ## COG0665 Glycine/D-amino acid oxidases (deaminating) 27 13 Op 4 . + CDS 25958 - 26440 537 ## Pjdr2_5226 hypothetical protein 28 13 Op 5 . + CDS 26466 - 27791 1310 ## COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases + Term 27820 - 27847 -0.8 29 14 Op 1 . + CDS 27981 - 28544 622 ## GYMC10_3369 OsmC family protein 30 14 Op 2 . + CDS 28580 - 29545 758 ## PROTEIN SUPPORTED gi|148988856|ref|ZP_01820271.1| 50S ribosomal protein L9 31 14 Op 3 . + CDS 29538 - 29660 58 ## + Term 29830 - 29888 23.1 - Term 29894 - 29941 1.3 32 15 Tu 1 . - CDS 29956 - 31302 1313 ## COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases - Prom 31427 - 31486 5.3 + Prom 31382 - 31441 8.6 33 16 Op 1 32/0.000 + CDS 31580 - 32365 399 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 34 16 Op 2 22/0.000 + CDS 32362 - 33030 905 ## COG2011 ABC-type metal ion transport system, permease component 35 16 Op 3 . + CDS 33090 - 33956 903 ## COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen 36 17 Tu 1 . + CDS 34391 - 34684 139 ## + Term 34789 - 34830 8.1 37 18 Tu 1 . + CDS 34846 - 35901 857 ## COG5337 Spore coat assembly protein 38 19 Tu 1 . - CDS 35916 - 36926 1142 ## COG1609 Transcriptional regulators - Prom 36952 - 37011 5.5 + Prom 36954 - 37013 5.8 39 20 Op 1 . + CDS 37059 - 37484 488 ## COG4154 Fucose dissimilation pathway protein FucU 40 20 Op 2 . + CDS 37549 - 39148 1646 ## COG2407 L-fucose isomerase and related proteins Predicted protein(s) >gi|333604899|gb|AFDH01000103.1| GENE 1 225 - 1769 1537 514 aa, chain + ## HITS:1 COG:BS_yunI KEGG:ns NR:ns ## COG: BS_yunI COG2508 # Protein_GI_number: 16080295 # Func_class: T Signal transduction mechanisms; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Regulator of polyketide synthase expression # Organism: Bacillus subtilis # 6 499 1 520 531 145 22.0 2e-34 MNLKGMTVRELLQLPILKDASLISGEEGLDRVVRYIDIMEVPDIKGWLREGELILTTGYS MRNDPGLVLELMEELRRADAAALAIKPERFMGGIPAEMVELSNRYRIPVIQIPPGIPYID ITHTVMEQILNTQAALLRRSEEVNKTLTGLVLHNKGIQVVADSVAELVQAPIWVIHKQGR VIVSSPADAGDPPTGRTKSWDVSVDKQFAGRLIIGKEQLDELELVCIEHARLVFSLELMR RKITYDTEQRLQGNFFEELLMGLPLSRQDAENKGRQLGLQPDWCWEICIAEGEPHLFEEH AAFPVALGELVESESAARKVKSHLLRQGDRFVLLLASPAASEPGTKQPVSGKTAAWADVL APLLDSHSHIRTGFGGKAPLWEVYRSYVKAKKAMTIGCRLDKDRRTFSYGEIEMFDLLLE SSAYVGFDAFMEKKIGRLSKYDRDNGTDLVPTFHAYLAAGGSLIEAANKLYIHRNSVKYR LDRIKDIADIDMEDTSKRLMYYLCTSFYLLKNLE >gi|333604899|gb|AFDH01000103.1| GENE 2 1933 - 2592 745 219 aa, chain + ## HITS:1 COG:PH1054 KEGG:ns NR:ns ## COG: PH1054 COG4126 # Protein_GI_number: 14590891 # Func_class: E Amino acid transport and metabolism # Function: Hydantoin racemase # Organism: Pyrococcus horikoshii # 2 211 9 219 228 202 51.0 4e-52 MIGVIRVLTTEDTKVLEQHGKLLNETYGLPVVSKCIPDQPLGIYDEETEAIAIPKIVELG KRMEREGCTVLVISCAADPAIEPLRESVSVPVIGAGSAAAYAALSMGRPVGVLGITEEAP AVIRDLLGGKLVRYARPEGVTNTTDLMTPAGREKAVEAARALLDAGTKVIVFACTGFSTI GLAAVLRSELHVPVVDAVEAEGLFASHYYKQLVDVREPN >gi|333604899|gb|AFDH01000103.1| GENE 3 2602 - 3525 952 307 aa, chain + ## HITS:1 COG:lin0496 KEGG:ns NR:ns ## COG: lin0496 COG0697 # Protein_GI_number: 16799571 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Listeria innocua # 9 300 11 310 319 94 25.0 3e-19 MTWATARSYLLLIFCVFVWALNYMVRQVLLREFPPLFLSALSLTIVSGAFLLWAWGTRAF VKITGKDALWLCCSAGIGLIANQILLLRGLQLTTATNASLIFTLSPLFTAGLAALFLKER VTWRMVAGSVIAISGLAFALNVRGLQFNAGDWIMAGATFTFSCNLIFARILTRRLSPFIV TVYSFALSAVLFDPFVLAAGEVTWIHPAGMWALVIVTVIVAQGLTGVLWNKGMQTLGAAK AAIMLNLQPLMTMLLEFILLGRAVTAPQLFGAALVFTGVLLGTVQLRIFSLKKKRTLSED FPDTAGK >gi|333604899|gb|AFDH01000103.1| GENE 4 3685 - 3765 79 26 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSTAVTSVTAVYHQVYKAASALRFRL >gi|333604899|gb|AFDH01000103.1| GENE 5 3910 - 5514 1829 534 aa, chain + ## HITS:1 COG:PH1047 KEGG:ns NR:ns ## COG: PH1047 COG1297 # Protein_GI_number: 14590884 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Pyrococcus horikoshii # 7 534 5 526 527 493 52.0 1e-139 MEEKEEKKHPSIFEPFALILNIVTSVIGAIIGMQLVTTLGVTPNTAIIGALVAMLIARIP MMIFRKYKSIHRQNLVQTSISSATFGAANSLLIPIGIPFAMGATELIVPMLIGAALAMFV DATLLYKLFDSKLFPAKGTWAPGVATAESILAGDKGGKRALLLGVGTVIGLIGSYFKISM SAFGVAFIGNIWALTMFGIGLMIRQYSVPWFDIDVNQLYIAHGVMIGAGIVALIQAGMLL FKRPKTAGSEAESEEEVRDSRLTRTDKEARRTLSLGFAAYLVIALLIAIIGGIMTKMSLG MLIGFIIFAAFAAFVHEIIVGIAAMHSGWFPAFAVAFITLLFGMLIGFPPVALALLAGFS AATGPAFADMGYDLKAGYILRGNGKDPELELHGRKQQYITAMIAFGVALLTVLLSYKGYF AQNLVPPIDKVYVSTIQAGASADIARQLLLWAIPGAIVQLLGGPSRQIGVLFATGLLIVS PNACWAVLAGILIRIIVLKIFKKEAETPMSILAAGFIAGDALYSFFSSVFKLKK >gi|333604899|gb|AFDH01000103.1| GENE 6 5525 - 6586 1427 353 aa, chain + ## HITS:1 COG:PH1052 KEGG:ns NR:ns ## COG: PH1052 COG3535 # Protein_GI_number: 14590889 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Pyrococcus horikoshii # 56 349 8 307 307 261 45.0 1e-69 MTRLKLNEEMVEQAVYGGAVLGGGGGGWIEEGLKLGRLALEVGEPELISLDEFGDDDLLV TVSMVGAPAAKEQFVKPVHYAKALEMLAAKIGRPIQGLHTNENGAGTTVNGWFQSAITGV PLVDFACNGRAHPTGSMGSMNLSEVEDYVSHQAAAGGRGDRYIELSISGTLDKASTMIRK ASIEAGGLVAVARNPVTAAYARANGAAGAITQAIEVGRALLSAKGEAAIEAVVAQLGGKV VTAGTVTDFALETAGGFDAGTVRIDDAYEMTFWNEYMTLEKDGERFGTFPDLIMTLDAKT AKPIVSAAIAKGQHIAVITVPAEKLLLSTTMRNRKLLQAVEDIIKKPVLSYLD >gi|333604899|gb|AFDH01000103.1| GENE 7 6639 - 7571 1172 310 aa, chain + ## HITS:1 COG:no KEGG:Dd703_0255 NR:ns ## KEGG: Dd703_0255 # Name: not_defined # Def: hypothetical protein # Organism: D.dadantii # Pathway: not_defined # 1 306 1 306 313 429 70.0 1e-118 MTLKQTMTVLDTLDSIYASGAKVKELFDAYPGVSVTVSKVSGEKGSTDFVKVVIPGTDGK SKGGSAPTFGIIGRLGGIGARPSRIGLVSDADGAVAAVAAALKLADMQTKGDALPGDVIV TTHICPDAPTRPHEPVDFMDSPVDILTMNQEEVVPEMDAILSIDTTKGNRVINHKGIAIS PTVKEGYILRVSDDLLRIMEMTTGQHAVTFPVTMQDITPYGNDLYHINSILQPAVATDAP VVGVAVTAQSVVPGCGTGASHETDIAAAARFAIEAAKETTAGTCAFYDPEEFGRITKLYG SMKILQTSGK >gi|333604899|gb|AFDH01000103.1| GENE 8 7658 - 8329 648 223 aa, chain + ## HITS:1 COG:no KEGG:PPE_01437 NR:ns ## KEGG: PPE_01437 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 1 223 9 231 231 293 68.0 3e-78 MEKLGMITIGQAPRTDVAPIVERCLEGRAELVQGGALDGLDKAEIERDLSPEEGQYVLTS RLATGESVLMSREKLQPLLQKRISEFEEAGIRHILLLCTGVFPGLTTERSYLIEPDHLIP PAVKAMAGGRRLGVLVPLAEQRATLAQKYEPYGLSPVFAVASPYKLDEAEFRRAAEELKE KSDIIVLDCMGYTEEARQFMAEASGKPVVLSNALMGKLVSEMI >gi|333604899|gb|AFDH01000103.1| GENE 9 8427 - 9374 974 315 aa, chain + ## HITS:1 COG:PH1048 KEGG:ns NR:ns ## COG: PH1048 COG2309 # Protein_GI_number: 14590885 # Func_class: E Amino acid transport and metabolism # Function: Leucyl aminopeptidase (aminopeptidase T) # Organism: Pyrococcus horikoshii # 1 313 3 318 320 263 47.0 3e-70 MNESLIEVGKHVLQSCLGLQARESFLVVSDEDKRHLAEPLYEAGKALGAEAVLMVMKDRY RPGEEPPAAVAAAMITSNVVVCITKQSLTHTQARKNAAAAGARLATMPGITEDMFLHGAI SADYAEVKRLTEQVTKLLTGAREVRIEKGGYTLTFPVEGRNGVPSTGLYLNPGESGNLPS GEAYIAPLEGTAEGQILIDGSIAGIGKLSEPLLLTIEQGRIVKAEGEAGPQLLGMLGDKD GRLLCEFGVGTNDKARITGVILEDEKVYGTIHVAFGSNNTFGGTIMAGVHIDGLVKEPTV YLDGKLIMEKGKLAF >gi|333604899|gb|AFDH01000103.1| GENE 10 9488 - 10759 1028 423 aa, chain - ## HITS:1 COG:BS_kinB KEGG:ns NR:ns ## COG: BS_kinB COG0642 # Protein_GI_number: 16080197 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Bacillus subtilis # 1 414 1 424 429 156 27.0 9e-38 MAQIKDLLLQLFFSLMPFVLYSFYYRDKDTNYSKKFILITSMICLFLSMTFASSVEKGIQ FDVRYVILFFALVFGGFRIGLLLVLEFVLYRLYLGGPGTSSAMGILLVTFPLSVLLCRVY HRTSQKYLVALMAGLCYSFFPLLLLYINRPDYILTHLTYHILIIPVHNSVGVLLLIYLFE KSATDKDMYMRYLQSEKIEAVGQVAASLVHEVRNPLTTVLGFLKLIRQDQAMPPEKLHRF IDISIEEVKRTEAILSEYLSMSKPLTQKREEIDLVHELEAVAEVMTPYATMNNVSLILHV PSEPVRLTANGAEMKQLLVNFVKNAVEACSAIQKGNVTLRMHTDGHLVKVHIRDNGIGMN KEQLRRLGSIYYSTKNTGTGLGLTYSYQVIRSMNGTVSVFSELHGGTEFTLSLPLSSKGP GGG >gi|333604899|gb|AFDH01000103.1| GENE 11 10932 - 11525 581 197 aa, chain + ## HITS:1 COG:MA0364 KEGG:ns NR:ns ## COG: MA0364 COG1309 # Protein_GI_number: 20089261 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Methanosarcina acetivorans str.C2A # 8 174 3 161 192 60 27.0 2e-09 MSVNNPEKVTQQREERRSQILHASIGIFAKKGLAAAKISDIAEAAGISHGHVYNYYSSKE ELFVSLVKMLQERYGRVCEEARRREGNARDKLLWHARKIGEDENALNGMHVVLHAETIAS ISPEEKREIPRRAVENLQPIIAIVKQGQEEGTFREGRPEDLAVLYFALLNGVSGARRRGL GAVANPDEEQLVGLLCK >gi|333604899|gb|AFDH01000103.1| GENE 12 11818 - 12834 1171 338 aa, chain + ## HITS:1 COG:BS_ssuA KEGG:ns NR:ns ## COG: BS_ssuA COG0715 # Protein_GI_number: 16077949 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components # Organism: Bacillus subtilis # 20 332 15 320 332 209 40.0 5e-54 MNKLQASLAAAALAIGLAGLTGCGAGQAATNASGTDAPKGKYTVNLANNGGGGLLLLAKE KGWFEEEFAKIGGDVKWSEFPSGPALLEALAAGRVDFSWLGDGAAISAQANNLPVTTLSL LSEGLKGLNIVIVPAKSTAQSLADLKGKKIAIAKGTTLHVFFIKAVKQAGLKESDFQLIQ LQAEESVAAFESGAVDAWVGLDPYTSIQIAKNGARVLTSGEALNIKAPVLTIGRTDFIKD HPGAAEAFLKGFEKAIEFQKGHRDEVVEFIAKAKKADRATIELVVQNTEYSNVPISKEIF SIQQASADILLEAGFIKKKIDVTRNTDSKAIEAVKPAK >gi|333604899|gb|AFDH01000103.1| GENE 13 12854 - 13720 1034 288 aa, chain + ## HITS:1 COG:BS_ssuC KEGG:ns NR:ns ## COG: BS_ssuC COG0600 # Protein_GI_number: 16077950 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type nitrate/sulfonate/bicarbonate transport system, permease component # Organism: Bacillus subtilis # 24 288 16 276 276 308 64.0 6e-84 MSALGQLNPSSPAAKDLEEREGRQAAAGRASARRGGKLKIVLLGLVLPLAALVVWQTVSG LKLVSATLFPSPLSIAEEFAAMVQSGELFHHLRVSVQRAAYGFLLGGSLGLLIGLLVGLR KRAEYMLDPTLQMLRTVPHLAITPLFILWFGFDELSKILLIALGAFFPLYVNTFLGVRNV DSKLFDVAKVLEFSRFRQITKLVLPSALPNVLLGLRLSLGVAWLGLVVAELMGSSEGIGY MIQDARQFSRTTAVFVGILIFAVVGKLVDSVVRLLEERLLKWRDNYKG >gi|333604899|gb|AFDH01000103.1| GENE 14 13799 - 14710 940 303 aa, chain + ## HITS:1 COG:PA0193 KEGG:ns NR:ns ## COG: PA0193 COG2175 # Protein_GI_number: 15595391 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Probable taurine catabolism dioxygenase # Organism: Pseudomonas aeruginosa # 4 290 13 296 300 367 62.0 1e-101 MSEQVKVTPVSGRIGAIIEGISLSGSLDASTVGFIREKLLRHKVIFFRGQNHLDNAGQEE FTKLLGSPIAHPTIKPKDGTDYVLELDSTHGGRANVWHTDVTFVDAYPAASILRGIVIPE SGGDTVWANTAAAYELLPAELRELADKLRVLHTNDFDYAATARTVNALGSEAARKYRESF ASTVYETEHPLVRVHPETGEKTLVLGGFAKKIEGFSIADSQKLIALFQEHITSLENTVRW RWAEGDVAVWDNRATQHYAVNDYGDQHRVVRRVTIAGEVPVGVDGRKSVTRIVSEPAAAA SAS >gi|333604899|gb|AFDH01000103.1| GENE 15 15235 - 15909 593 224 aa, chain - ## HITS:1 COG:BH2247 KEGG:ns NR:ns ## COG: BH2247 COG2968 # Protein_GI_number: 15614810 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus halodurans # 24 224 8 207 210 87 28.0 1e-17 MYGFAPPPPLPPSPGYRAGKPAAIEVTGDGIVSVIPDQAVIVLGAVTEGESLSPLQAENA RIISAVIDSLLQLGISRDNIQTDEFRIDPQYDFQDGKQIFRGYRVTHLLKITTERVGETG TIVDTAVSKGANSVSGISFRTSQPQKYSKEALALAVRNAREKAQTIAASLGVTLAAVPES VREISRQNEPVPFKASVLAASPATPIQPGELQVYAAVSERYTFS >gi|333604899|gb|AFDH01000103.1| GENE 16 16116 - 16676 685 186 aa, chain + ## HITS:1 COG:no KEGG:BBR47_39740 NR:ns ## KEGG: BBR47_39740 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 4 173 8 181 197 209 55.0 4e-53 MIRDIHAMFLVTGIMASGKSTVAQLLAERFEKSVHLRGDHFRKMIVNDRKEVHPDAEADQ MEQLLLRYRLTTQAADTYYSAGFTVVMQDVVVGRVLNDFLALLEDRPLYVIVLCPGEEEV ARREAARSKTGYGVWTVSALNGVLHAETPRVGLWLDSTDLTPEETVDAILERVWEEGTVR ASDVRD >gi|333604899|gb|AFDH01000103.1| GENE 17 16742 - 17533 258 263 aa, chain + ## HITS:1 COG:no KEGG:BMD_1640 NR:ns ## KEGG: BMD_1640 # Name: not_defined # Def: trifolitoxin immunity protein (EC:2.7.-.-) # Organism: B.megaterium_DSM319 # Pathway: not_defined # 1 262 1 262 263 412 72.0 1e-113 MSNHSNEELLAGGNVSKVYRSGHTVRRELKPNSPKIHALLNHLDHKGYGYAPKYLGIDEK GREILSFIEGEAGNYPLKNYMRSDDVLQEIAKMLRLYHDAVSDFSFDDGWQPLDGTPQPL EVICHNDFAVYNMIFQQERPIGIIDFDAAGPGPRLWDIAYTLYTCVPLSRLYLTETGEIV YYDSVQDASRIKNRVNLFFDSYGEGFAENYIDMVLLRLEGLCKTITRRASEGDLAFQKML DAGHLEHYRNDITFISEHKNDWT >gi|333604899|gb|AFDH01000103.1| GENE 18 17576 - 18088 655 170 aa, chain + ## HITS:1 COG:DR0188 KEGG:ns NR:ns ## COG: DR0188 COG0454 # Protein_GI_number: 15805224 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Deinococcus radiodurans # 27 170 18 161 175 75 34.0 4e-14 MSTCPDAGAELEIGRAGPADTALLQELYVEAARWRVSRGILLWDEKTFTREYIAGLMADY EMFIAYSGGEAVGCFMLQWSDKPLWGERDRGDAGYLHRLVVTRKRSGLRLGTRLLEWAEG YIRRAGKTYFRLDCMSENSGLNAYYRNAGFVYLETVRGDGWRANLYEKKL >gi|333604899|gb|AFDH01000103.1| GENE 19 18418 - 18957 629 179 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_3100 NR:ns ## KEGG: GYMC10_3100 # Name: not_defined # Def: GCN5-related N-acetyltransferase # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 179 1 179 180 193 58.0 3e-48 MGSSPSIVIREAAEADREAVRAVMLEAYLQYADVMSAQRWQQYLEDIGGAADKGNPVARL VAEAEGKIVGTVQLFVSSEAAYGRPELEIYTPIIRYLSVSPEARGRGVATELIKESAKRS LELGASTLHLHTSDMMASAVSLYERLGFQRAFDKEFHNGEVLVKSYRLELRESAFFTAS >gi|333604899|gb|AFDH01000103.1| GENE 20 19164 - 20033 1099 289 aa, chain + ## HITS:1 COG:BS_ytmK KEGG:ns NR:ns ## COG: BS_ytmK COG0834 # Protein_GI_number: 16079989 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Bacillus subtilis # 49 282 34 266 270 240 51.0 3e-63 MKKQVSKWLAGAGILLLAAASAGCGKAVETGGGTTSAATDKPGESPAGKVQKVIVGTGTK FPQVCFIDQNGKLTGFDVELIKELDKRIPEYEFEFKTMEFQSLLLSLETNKIDLIAHQME KNPEREQKYLFNKEPYSIFLNKVAVEINNDTIKTIDDLKGKKVRTGATSNEAYILQEYNK KNNNAIEIVYDNATANDLVDKIRKGRIDATVTSDFALRNYTDKDGKVALKTVGEPLTESD VLYVFRKTDGKLADRIDQAIKEVKADGTLSKLSIQWLGQDFSHVGKQKK >gi|333604899|gb|AFDH01000103.1| GENE 21 20067 - 20849 1061 260 aa, chain + ## HITS:1 COG:lin2442 KEGG:ns NR:ns ## COG: lin2442 COG0765 # Protein_GI_number: 16801504 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Listeria innocua # 1 227 1 227 238 214 48.0 2e-55 MGRRFEADYIFFFIPKLLSYLHITLLIVGSSIALGLIIGFLIALPRLYNVPVLRRISQVY VSFFRGTPILIQLFLIYYGLPELLKIVQVDVSKTPVLLFVILTYSLHTGAYVSEMIRSAV AAVDRGQVEAAYAVGMNGYEAFTRIVMPQALGIALPVFGNLVIGNLKDSSLAFTLGVMEM TGKSETLGTATQHFIEIYIALSLIYFVVSFILQKGFDAAEKRLLRHSRPLADTAGKTAAR LNIFRRLQPEIKKEAPGYEP >gi|333604899|gb|AFDH01000103.1| GENE 22 20839 - 21549 885 236 aa, chain + ## HITS:1 COG:lin2441 KEGG:ns NR:ns ## COG: lin2441 COG0765 # Protein_GI_number: 16801503 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Listeria innocua # 1 235 1 235 235 191 47.0 9e-49 MNLDPAFIGTAFLSLLSALPVTLYITAVSVLGGLLIGTGIALARIYRVPVLHPAAVAYVT FIRGTPMLMHLFLVYFGLPAVLDTLADRYGWSFNSGSIPLVAFVIIAFSITAGAYMSEVV RAGIGAVDRGQIEAAYAVGLTTAQALRRIVFPQAFAVSLPNLTNSVISMLHATTLAFTIS VVEINAQANIVASTNWKFFEAYIAAALLFWGITVLVEKASSALEKRFTLYNRGGVA >gi|333604899|gb|AFDH01000103.1| GENE 23 21546 - 22298 679 250 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 242 1 242 245 266 52 2e-70 MIKLTGISKSFGKQEVLKGIDLTVHKGEVVVILGPSGSGKTTLLRCINFLEKPNAGEVTI GDFTVDCKRSGRKDIHTLRKKTAMVFQQYNLFKHKTVLENVMEGLVVAQKFPKDEARARS AEVLLKVGLSGKLDAYPSQLSGGQQQRVGIARALALNPEVILFDEPTSALDPELVGEVLA VIRKIAKEGITMIVVTHEMGFAREVSNHVVFMDGGVIVEEGPPGELFNAPKEERTRQFLK RITPELSYSI >gi|333604899|gb|AFDH01000103.1| GENE 24 22441 - 23508 1198 355 aa, chain + ## HITS:1 COG:AGl2803 KEGG:ns NR:ns ## COG: AGl2803 COG2141 # Protein_GI_number: 15891512 # Func_class: C Energy production and conversion # Function: Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 5 327 6 326 335 250 44.0 3e-66 MAIKLSILDQTPIYEGETGTEAFKRTVALARRAEELGYHRFWVAEHHDSAHVAGSSPEVL ISHLLAKTERIRLGSGGVMLQHYSPYKVAENFNVLSALGPGRIDLGIGRAPGGLPRSTQA LQKNVVDADSLTDKIVELRKFLHNRLEEDHPLAGLRANPVPERPADLYVLGASTGSARIA AELGLPYVFSLFINGDPQTAVEAIGTYRSEFNYADGAEPAAILALSVIAAGSEEEAEELA GDHKLVKIHLESGRTITVSTLEHAEEFGKQSSENFTIEVKEPSVTKGTIETVKKELLELQ LATGVDEFIVLTAVKDFAKRVRSFELLIEALSGADTAAETEADAETAGQRVSVEA >gi|333604899|gb|AFDH01000103.1| GENE 25 23595 - 24788 1263 397 aa, chain + ## HITS:1 COG:BS_yxeP KEGG:ns NR:ns ## COG: BS_yxeP COG1473 # Protein_GI_number: 16080998 # Func_class: R General function prediction only # Function: Metal-dependent amidase/aminoacylase/carboxypeptidase # Organism: Bacillus subtilis # 17 380 8 372 380 413 56.0 1e-115 MTSETLAHQEQLEELATRLVEVRRHLHENPELSHEEFETTAFIKAWLEEAGIRIAPYSLR TGLIAEVGGLRPGPVVAIRADIDALPIREETGLPYASKIPGKMHACGHDFHTAAVLGAAY LLKQREEELPGTVRFLFQPAEEKASGALKVIGSGALENVRAVFGLHNKPDLPVGTLGIKE GPLMAAADGFVAEIEGRGSHAALPEAGSDPIVASAQIVSAVQSIVSRNISSLDSAVVSVT KLHSGTAWNVIPEKALLEGTIRTFDEGVRSRVLARFREVVEGVAAASGTKASLRWIQGPP PVNNSAELAALARSTAESLGYIAVTPLPSPAGEDFAFYQREVPGLFVFVGTDGPHEWHHP AFDLDEAALPVSAQFFSELAQRALLELSGQPAGGANG >gi|333604899|gb|AFDH01000103.1| GENE 26 24797 - 25945 1208 382 aa, chain + ## HITS:1 COG:STM1160 KEGG:ns NR:ns ## COG: STM1160 COG0665 # Protein_GI_number: 16764516 # Func_class: E Amino acid transport and metabolism # Function: Glycine/D-amino acid oxidases (deaminating) # Organism: Salmonella typhimurium LT2 # 1 373 1 372 372 286 41.0 6e-77 MTYDVIVVGAGSMGMSAGYHLAKQGVRTLLIDAFNPPHGEGSHHGEPRLIRHAYSGGPAY ITVALRAQELWEELQAETGAELMVPSGVINIAGADAFRTRAEDARKLGVRVELLDADEIG RRWPGFELPEHFAGMYEPDAGYLFSEKCVAAYRRLAEEAGARLLTDTPVRQLNVREGVVA VHTDQGVYYAQQAILATGAWFRTLEPFVKLPVRAVRKTVGWFQPKQPLFGAGRFPGFTIG GGEGGYYGFPDIGGAGVKIGRHDTGVEWTAGEALEPFGRYEEDEGDLRRALEAYMPQAAG RLNRGAVCKYELSPDEQFMIDRHPAHPSVLLAGGFSGHGFKFASVVGEILADLTLYGRTP FDIRPFALTRFTQGAQSPRTTA >gi|333604899|gb|AFDH01000103.1| GENE 27 25958 - 26440 537 160 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_5226 NR:ns ## KEGG: Pjdr2_5226 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 9 160 4 155 167 176 57.0 3e-43 MSGSGILNVDIQLYLSVYDQLKLAVAGLDEEQLKRKEAPGKWSITEVLAHLADHNIVVSF RIREILAGSDKTLPGFAQDPWVEGQRANESDVSELLDAYAALLHYNAVLFRRLTEEDWEK TGVNFKGETVTLASVVNAFTAHVQTHLAQIERIKSRVAAV >gi|333604899|gb|AFDH01000103.1| GENE 28 26466 - 27791 1310 441 aa, chain + ## HITS:1 COG:BS_ytnJ KEGG:ns NR:ns ## COG: BS_ytnJ COG2141 # Protein_GI_number: 16079983 # Func_class: C Energy production and conversion # Function: Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases # Organism: Bacillus subtilis # 1 433 1 434 442 553 60.0 1e-157 MSKKRQLKLGALLHGVGGNPAMWRHPDAQPDASVNIELYKKWVRKAEAGKFDLIFIADGL YINEKSIPHFLNRFEPITILSALAAVSTHIGLVGTLSTSYSEPFTVARQFASLDAISGGR AGWNVVTSPLEGSALNYGKSHPEHDLRYKIAEEYLDVTKGLWDSWEDDAFVRDKESGVFF DPEKLHTLNHQGEFFSVRGPLNIARSRQGQPVIFQAGASEVGKNYAAKVADAIFAGQENL EDAVRFYKEVKERAASHGRSPDEVLIFPGIGPIIGSTEEEAERKYQEVADLVTIETALDY LGRFFEHHDFSQYPLDEPFPDLGDLGKNSFQSGTDKIKQEAKEKNLTLRQVALQAATPKG RFVGTPEKVADLIQEYFEAGAVDGFMLSAAVPNGLEDFVDHVVPILQERGIFRTEYESDT LRGNLGLPVPANRYTKQPETV >gi|333604899|gb|AFDH01000103.1| GENE 29 27981 - 28544 622 187 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_3369 NR:ns ## KEGG: GYMC10_3369 # Name: not_defined # Def: OsmC family protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 179 1 177 183 205 60.0 7e-52 MSQLNDYLADKKKSLEEREEERKRVANQPSDVLKAKVRAKDRSGVREIRIRNFQILSDSL PDFAGFDLGPNSAEIQLGVLGSCLTHITLIQAALRGVPLESLEVEVEGELHKFAGKDGYE EIPFWPHNIRYTLHIESAASKEEIAELHRGVEEVCPILNLLQRPQEITGKVLHSSGSGEA GEVTIGS >gi|333604899|gb|AFDH01000103.1| GENE 30 28580 - 29545 758 321 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148988856|ref|ZP_01820271.1| 50S ribosomal protein L9 [Streptococcus pneumoniae SP6-BS73] # 21 320 6 305 308 296 48 1e-79 MSARDGEKVEGAGHSPAMAGSVLELIGDTPVVRIRRLSGENDAELYVKLESFNPGGSVKD RAARHMIGQAERDGRLLPGGTIIEVTSGNTGIGMAMVAAVKGYRLIVIMSDNMSAERTGI LQAYGAEVVLYPAEEKIEGGLRRARELEKRIPGSFVPVQFENAGNADVHRFTTASEIWEQ MQGRLDAFVCTSGTGGTITGTGESLKSRLPDLRIYVVESRCSPLLSGGEPGTHRIPGISP SFIPPVLNTQLYDEVLQIGDEDAHETARELARREGLLLGPSSGAAVWAGMRIARKLGRGK KVLCIAPDTGERYLSTGLYDV >gi|333604899|gb|AFDH01000103.1| GENE 31 29538 - 29660 58 40 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFEAMLPFTLAATASPESGGVNAANDITPGGAQRSTHAPM >gi|333604899|gb|AFDH01000103.1| GENE 32 29956 - 31302 1313 448 aa, chain - ## HITS:1 COG:BS_yxeK KEGG:ns NR:ns ## COG: BS_yxeK COG2141 # Protein_GI_number: 16081003 # Func_class: C Energy production and conversion # Function: Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases # Organism: Bacillus subtilis # 2 442 3 441 441 487 52.0 1e-137 MAANRQIKLSAYLVGTGMHVASWKHPNAQRSASISIDYYKALAQTAERGKFDIAFIADSL AINEDSHPNILNRFEPLTLITALAGATSKIGVVATASTSYIEPFNLARSLLSVDQISKGR AGWNIVTTRDLSGSTARNFGAQDHLEHGFRYKRAEEFVEVVTGLWDSWEDDAFVQDKESG VFFHPGKMHRLNHRGEFFSVEGPLNIARSPQGYPVLVQAGTSESGQQFAAKRAEVIFSIK YSKQEAREFYDTFKSRVASFGRSPDEVVILQGIFPVIGRTQEEADEKYRQLESYISEETG FSFLQDYFPGVDFAGLTLESRAADAGLDRLELDKSDYRKHQPVIARENPTLREVYSLLTG SFSREDWVGTPEKIADTLEEWFTERAADGFMLMAPLLPDGLHDFVEEVVPLLQQRGLFRT EYAGDTLREHLGLSVPENRYAREEVSRP >gi|333604899|gb|AFDH01000103.1| GENE 33 31580 - 32365 399 261 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 242 1 240 245 158 37 6e-38 MILVENLTKSYKSASGPVTALENINLRIQKGDIFGIIGFSGAGKSTLIRCLNRLEEPDSG TVEIEGLRITDLGEKELRMARRKIGMIFQQFNLLDSKTVFQNVAFPLKVAGVPKPLLAER VREILDLVQLGDKENVYPSQLSGGQKQRVGIARALVNEPDVLLSDEATSALDPQTTYSTL ELLKDINRQLNLTIVLITHELDVLQHICRNMAVIEKGRIVETGTVDKFFLQPESDTARRF VSIIDHYRSKRTVLEGAGAGI >gi|333604899|gb|AFDH01000103.1| GENE 34 32362 - 33030 905 222 aa, chain + ## HITS:1 COG:FN0659 KEGG:ns NR:ns ## COG: FN0659 COG2011 # Protein_GI_number: 19703994 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, permease component # Organism: Fusobacterium nucleatum # 5 221 18 231 233 174 50.0 1e-43 MRDDLVDLLVEGLQETLFMVVWSSLFAFLLGSALGISLVVTEKGGILAAPKLNKVIGTAI NAVRSLPFIILIVLLLPLARLIVGTTLGPTAAIVSLSIGAAPFLGRIIENSLKEVSSGKI EAAKSVGASPWTIILRVLIPEALPALIRAVTIGVIAITEFTAVAGAIGAGGLGSLAIRFG YQRFREDILIATVILIILIVQIIQWSGDSIAKSVIRKRYKLE >gi|333604899|gb|AFDH01000103.1| GENE 35 33090 - 33956 903 288 aa, chain + ## HITS:1 COG:CAC0986 KEGG:ns NR:ns ## COG: CAC0986 COG1464 # Protein_GI_number: 15894273 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface antigen # Organism: Clostridium acetobutylicum # 53 288 38 272 272 218 52.0 1e-56 MTPTRLSAIAAILLAVTLTAAGCGSPGKGEVTASEKTGSTPGASKEPAKEVKLTVGAAAV PHAEILEVVKPKLKEQGINLDIKVFDDEGQLNPALKDKQIDANYFQHVPYLDSVKKEKSF DFAVTAKVHVEPIGFYSSKLKSKDEIKDGAKIGIPNNPSNEYRALVLLQQQGLIKLKEGL TTYEATPKDIADNPKNLKFFETDSATLPRALPDLDGAIINTNLVLEAKLDPKSALFREDA NSPYANVIVVRKGDESRDEIKKLDAALTGPEVKKFIQDKYGVAVVPAF >gi|333604899|gb|AFDH01000103.1| GENE 36 34391 - 34684 139 97 aa, chain + ## HITS:0 COG:no KEGG:no NR:no METETKETARGVTGRRGGETITAGSTRKTFPEESGRIPGTRLRIDRRGNSRGKIVPGTGI PEAVVPKAAVQEETEPKGAVREETVRLAAGRTGSPHA >gi|333604899|gb|AFDH01000103.1| GENE 37 34846 - 35901 857 351 aa, chain + ## HITS:1 COG:BS_cotH KEGG:ns NR:ns ## COG: BS_cotH COG5337 # Protein_GI_number: 16080659 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Spore coat assembly protein # Organism: Bacillus subtilis # 2 351 6 362 362 262 38.0 7e-70 MSLPHFQLAVGTGGDRKLRQDVWSSRFVPAILSDGSSSVPIRIGYRGGHTREYAKKSYEI RMKGRTYHLNAEYDDPSLIRNALSFRFFRMIGVPSPHTRHVVLTIDGRNEGVYVLIEAVK RSFFRRRGILMKSLLYASNDRANFSLKDPDTGKRKKTLFAGYDLIIGTGQDRDKMKAFIQ SMHALKGDRLKAFLGKHVDLDNYLRWLAGAVMTGNYDGFEHNYAIYEHKPTRRYRMIPWD YEGTWGRNCYGKRVNSNLVRITGYNDLTEKVLESKEARQRYKALLKHLTDTAFTKDRIMP VVHEMHERIARDVDKDPGRQKSLSLFRSEPEVIEQYIEDRRKDIQEGIRLL >gi|333604899|gb|AFDH01000103.1| GENE 38 35916 - 36926 1142 336 aa, chain - ## HITS:1 COG:SMb20674 KEGG:ns NR:ns ## COG: SMb20674 COG1609 # Protein_GI_number: 16265129 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Sinorhizobium meliloti # 4 332 1 328 339 233 37.0 4e-61 MITIYDIAEKANVSAMTVSRVINNSGRISEATRKRVRKVMEELNYIPNSMARGLVLQKTK LLSLLITDITNPFYTTIARGAEDTAKRSGYKLLFGNSDEDYGKEKDYVEMILSTRVDGVL FAPTGDASLEQLRQLQKHGIPFVILDREVPGIETDVVLGDSKEGARKLVEHLIGLGHRRI ALVNGSPDVSTARLRYTGYREAHLLGGLPLDESLVVSLNYREFQDEASLQTLLALPSPPT AIFAANNLLAVGIIGALRQRGLSVPEDVSVVCFDDFGPAETVNPFLTVASQPAYQFGALG MQLLIERIESGPGSESRKIMLPSELLIRSSTRTWDR >gi|333604899|gb|AFDH01000103.1| GENE 39 37059 - 37484 488 141 aa, chain + ## HITS:1 COG:SP2165 KEGG:ns NR:ns ## COG: SP2165 COG4154 # Protein_GI_number: 15901975 # Func_class: G Carbohydrate transport and metabolism # Function: Fucose dissimilation pathway protein FucU # Organism: Streptococcus pneumoniae TIGR4 # 1 140 1 140 147 161 57.0 3e-40 MLKGIPSILSPELLKVLMEMGHGDEIVLGDGNFPAASHAKRLVRCDGHGVPELLEAVLAL FPLDTYGDQPVSLMAVVPGDPVQPVIWETYGELIGRHLPRAPMGQLERFAFYARAKEAYA IVATSESALYANIILRKGVVT >gi|333604899|gb|AFDH01000103.1| GENE 40 37549 - 39148 1646 533 aa, chain + ## HITS:1 COG:SP2158 KEGG:ns NR:ns ## COG: SP2158 COG2407 # Protein_GI_number: 15901968 # Func_class: G Carbohydrate transport and metabolism # Function: L-fucose isomerase and related proteins # Organism: Streptococcus pneumoniae TIGR4 # 13 533 5 525 588 778 69.0 0 MNNREHRWNRPFPKIGIRPTIDGRRKGVRESLEEQTMNMAKAAAALLSGNLRYPDGTPVE CVIADTCIGGVAEAAAAADKFARSGVGVSVTVTPCWCYGTETMDMNASIPNSIWGFNGTE RPGAVYLAAVLSAHAQKGIPAFGIYGKDVQDAGTADIPEDVREKLLRFARAALAVAVMKG TSYLSVGSVSMGIAGSIVSEELFQNYLGMRNEYVDMSELVRRMEEEIYDKEEFGLALAWV KDNCKEGPDNNSAVIQTSRERKDKDWETVVKMSLIVRDLMTGNPKLAELGFGEEALGHNA ILSGFQGQRHWTDHFPNGDFMEAILNSSFDWNGRRGPYLVATENDSLNGVAMLMGYLLTH TAQIFADVRTYWSPESVKRVTGYTLEGAAEHGILHLINSGSAALDGTGQQSRDGAPAMKP YWEITEEEVDKCLSETSWRPAAVEYFRGGGYSSDFLTKGGMPVTMTRINLVKGLGPVLQL AEGYTVDLPDNVHDALDKRTDPTWPTTWFAPILTGEGSFRDVYSVMDTWGSNH Prediction of potential genes in microbial genomes Time: Sun Jul 17 10:00:20 2011 Seq name: gi|333604857|gb|AFDH01000104.1| Paenibacillus sp. HGF7 contig00082, whole genome shotgun sequence Length of sequence - 47926 bp Number of predicted genes - 37, with homology - 34 Number of transcription units - 21, operones - 8 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 66 - 117 21.3 1 1 Op 1 . - CDS 267 - 845 632 ## Bsel_0492 TetR family transcriptional regulator - Prom 866 - 925 2.0 2 1 Op 2 . - CDS 1024 - 2427 328 ## TepRe1_1987 copper amine oxidase-like domain-containing protein - Prom 2657 - 2716 5.7 - Term 2711 - 2771 8.5 3 2 Op 1 2/0.000 - CDS 2811 - 3776 1025 ## COG1609 Transcriptional regulators - Prom 3858 - 3917 4.8 - Term 3886 - 3928 6.0 4 2 Op 2 1/0.250 - CDS 3937 - 7356 3148 ## COG3459 Cellobiose phosphorylase 5 2 Op 3 . - CDS 7378 - 9537 2125 ## COG1472 Beta-glucosidase-related glycosidases - Prom 9662 - 9721 8.2 + Prom 9734 - 9793 8.6 6 3 Op 1 35/0.000 + CDS 9886 - 11148 1513 ## COG1653 ABC-type sugar transport system, periplasmic component 7 3 Op 2 38/0.000 + CDS 11259 - 12146 1136 ## COG1175 ABC-type sugar transport systems, permease components 8 3 Op 3 . + CDS 12167 - 13030 1076 ## COG0395 ABC-type sugar transport system, permease component + Term 13062 - 13109 7.1 + Prom 13406 - 13465 2.5 9 4 Tu 1 . + CDS 13492 - 13641 118 ## + Term 13785 - 13836 12.0 - Term 13771 - 13822 12.0 10 5 Tu 1 . - CDS 13927 - 14577 516 ## - Prom 14617 - 14676 4.7 11 6 Op 1 . - CDS 14749 - 15498 915 ## BL03094 putative transporter YfjL 12 6 Op 2 . - CDS 15495 - 16082 553 ## BL03093 hypothetical protein 13 6 Op 3 . - CDS 16072 - 16566 517 ## COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog - Term 16677 - 16725 7.2 14 7 Op 1 38/0.000 - CDS 16738 - 17568 1021 ## COG0395 ABC-type sugar transport system, permease component 15 7 Op 2 35/0.000 - CDS 17581 - 18477 1102 ## COG1175 ABC-type sugar transport systems, permease components - Term 18498 - 18549 4.0 16 7 Op 3 2/0.000 - CDS 18558 - 19859 1728 ## COG1653 ABC-type sugar transport system, periplasmic component 17 7 Op 4 . - CDS 20024 - 22117 1831 ## COG3408 Glycogen debranching enzyme - Prom 22252 - 22311 5.0 + Prom 22203 - 22262 4.6 18 8 Tu 1 . + CDS 22364 - 23380 1159 ## COG1609 Transcriptional regulators + Term 23394 - 23455 6.2 - Term 23382 - 23443 5.4 19 9 Op 1 . - CDS 23597 - 24445 850 ## COG1737 Transcriptional regulators 20 9 Op 2 . - CDS 24476 - 25180 889 ## COG2120 Uncharacterized proteins, LmbE homologs 21 9 Op 3 . - CDS 25225 - 26397 1208 ## COG1680 Beta-lactamase class C and other penicillin binding proteins 22 9 Op 4 . - CDS 26387 - 27607 1249 ## COG3876 Uncharacterized protein conserved in bacteria - Prom 27675 - 27734 11.0 + Prom 28028 - 28087 2.0 23 10 Op 1 1/0.250 + CDS 28121 - 29062 769 ## COG2971 Predicted N-acetylglucosamine kinase 24 10 Op 2 . + CDS 29128 - 30042 837 ## COG2103 Predicted sugar phosphate isomerase 25 10 Op 3 . + CDS 30075 - 31376 1062 ## GYMC10_1420 GCN5-related N-acetyltransferase - Term 31450 - 31487 2.2 26 11 Tu 1 . - CDS 31736 - 32350 258 ## Swol_0293 hypothetical protein - Prom 32476 - 32535 3.9 + Prom 32436 - 32495 7.9 27 12 Tu 1 . + CDS 32677 - 35151 2267 ## COG2909 ATP-dependent transcriptional regulator + Term 35164 - 35198 3.7 28 13 Tu 1 . + CDS 35784 - 36212 455 ## PPSC2_c0342 hypothetical protein + Term 36271 - 36309 6.5 - Term 36358 - 36393 1.6 29 14 Tu 1 . - CDS 36429 - 37709 619 ## GYMC10_4768 hypothetical protein 30 15 Tu 1 . - CDS 37832 - 39745 2091 ## COG0441 Threonyl-tRNA synthetase 31 16 Tu 1 . - CDS 40120 - 42720 2579 ## COG1409 Predicted phosphohydrolases - Prom 42793 - 42852 5.3 - Term 42964 - 42995 2.2 32 17 Tu 1 . - CDS 42996 - 43403 521 ## Dfer_0293 acetyltransferase-like protein + Prom 43648 - 43707 6.5 33 18 Tu 1 . + CDS 43837 - 44811 981 ## GYMC10_2016 hypothetical protein - Term 44846 - 44895 5.9 34 19 Tu 1 . - CDS 44909 - 45559 654 ## BBR47_30430 hypothetical protein - Prom 45647 - 45706 3.5 35 20 Op 1 2/0.000 - CDS 45766 - 46953 1282 ## COG2814 Arabinose efflux permease - Prom 47022 - 47081 5.0 - Term 46994 - 47032 -0.3 36 20 Op 2 . - CDS 47092 - 47403 298 ## COG0640 Predicted transcriptional regulators - Prom 47447 - 47506 8.3 + Prom 47488 - 47547 10.4 37 21 Tu 1 . + CDS 47662 - 47926 69 ## Predicted protein(s) >gi|333604857|gb|AFDH01000104.1| GENE 1 267 - 845 632 192 aa, chain - ## HITS:1 COG:no KEGG:Bsel_0492 NR:ns ## KEGG: Bsel_0492 # Name: not_defined # Def: TetR family transcriptional regulator # Organism: B.selenitireducens # Pathway: not_defined # 1 185 1 182 191 97 29.0 3e-19 MARQRAFTKSELLDATERLLMERGYDGFHLKALSEMLSGARSTIYEYYANKEEIVAACMR RTMEQTIEACEGIEQLEPVAAIKKVLLIFLELSNFHTLMLAAPKIDETASDKARRDLEFL NEGHADLKKKLTALFQQAQEAGALRADIPLPVITAVFFHAIDTPNWLNVPTEEWADMLFG LWWNGGGNPLTK >gi|333604857|gb|AFDH01000104.1| GENE 2 1024 - 2427 328 467 aa, chain - ## HITS:1 COG:no KEGG:TepRe1_1987 NR:ns ## KEGG: TepRe1_1987 # Name: not_defined # Def: copper amine oxidase-like domain-containing protein # Organism: Tepidanaerobacter_Re1 # Pathway: not_defined # 1 88 1050 1137 1139 83 44.0 2e-14 MLPLRFIGESFGAEVKWENDSRKVILTTSEKAILLHVGEPTATVNGIVTELEQSPVIVND TTLVPLRFIAESLNRTVIYDNDTKTISITGKDEGGKPPIPVDKPEAPIKEKLSQPSVDNL TFMPGKTVIFVRNEDGTGSIFQQESVSSFVADKTGNVYMIDFNSSRSGDSGYRISVYNQK HGDNRRLQEAVAINEKFNLEYTDKSDQVHKISYRDIKPIKLFYDEINDKLYMLANAGTRR QEIITVFYEILPEIKVITYHLEQTDEEGMNDFLTTLDGQTFFYSNTFMERVYTQTNKERK TTGFLKEGTKQRLTSVVKDGSIYLLDRANKKISRVREDGYLVEVAQVNLESINNAVARDG YFYAVDKKGFYRIDTDGKVENYFKLGELIYNQGLYEPKSGTYERMVPGVDGYVNFPQNNV THQGEKLTGPLELITYPDFTIDNVGNLILYDPYDRLLKRINIYKTNK >gi|333604857|gb|AFDH01000104.1| GENE 3 2811 - 3776 1025 321 aa, chain - ## HITS:1 COG:lin1838 KEGG:ns NR:ns ## COG: lin1838 COG1609 # Protein_GI_number: 16800905 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 1 320 1 320 321 379 59.0 1e-105 MVSIKDIAKKAGVSISTVSYALNGSPKVTDETCARILAIAKELNYTPNAAARTLKKRESK IIGVFLTDFSGPFYGHLLQGIKEYLNGHDYELIVCSGSQSHRFLPERMIDGAIILDAAFT DEELLQHADRGHKIVVLDRELIHPNINQVLLDNKAGANLAADYVLEKGHRKLYVVAGPQD SYDSDKRLHAVRQTVGRYKDVDCTELPGSFDKESGEKAARHILEAYKEPAAVLCLNDEMA VGVYNTVAESDYRIGEHIHIIGFDNIELSAYVSPRLATIDYSKHKWGALAAEQLLKLIAG EKVEHERIYVTLVKGESVGDV >gi|333604857|gb|AFDH01000104.1| GENE 4 3937 - 7356 3148 1139 aa, chain - ## HITS:1 COG:lin1839 KEGG:ns NR:ns ## COG: lin1839 COG3459 # Protein_GI_number: 16800906 # Func_class: G Carbohydrate transport and metabolism # Function: Cellobiose phosphorylase # Organism: Listeria innocua # 1 1126 1 1071 1086 905 45.0 0 MTQLKDRSLQLKSGSLQFSFLNSGDIAEIVSGSTLINQWIGNPLDGSMNNLYLRLHREEG IQAYPLLGVRSASHMSRKESGIAWNGEIEGISYEITFTLTPQNIWFWDVKVTGGAGDTPV DVLYGQDLGLADKGAVRSNEAYMSQYIDHSVFQDEKRGYAVCSRQNQPQGGAFPYVQQGS LTGADGYSTDGFQFYGLSYKETDKPEALARPHLANEIYQYEFAYTALQSGRVVPGEEPVR FVFYGLFKENHPEAVTALEFGEEVSAAWEQAEALNAVADGNGDSGSGTDTDIVSGSGALE PARLSDDIGAPLTGLTMTAEEVAGYFPDRRLEETLEGELLSFFTETNEHVVLKAKELRVE RPHGHILMSGDNARLRESVLTSTAYMYGLFNSQLTVGNTSFNKMLTNARSALNVSKTSGQ RIYIETGGEYRLLTMPSLFEIGFNYTRWYYKLADDTVIVTVFTAADAPEIRLQLRSVQGK TYRYLVTHQVSMNNNEYEVPFHLSVQEDGQTILFTADEASDSAQVWPDLTYRMQVAGAPL RLTDETRLAPKAEPGSASLAVLELGESASWSMAVQGLLRGEEMPFADREADLEAERYRAF LGTVMNGFHLYRANGEKDAELAKMNVLAWWYTHNMLVHYSVPHGLEQYGGAAWGTRDVCQ GPSEYFLATGKYGEVRDILRTVFSHQFEDDGSWPQWFMFDRYSRIQQEESHGDVIVWPLK VLADYLSATGDFSVLDEQLPYTRRHGGNFTEKTASLLEHAVKEIGYIRSHFLHDTHLSSY GDGDWDDTLQPANAQLKQFMVSSWTVSLTYQVFRQLSAVLADSRGALAAELRGMADGIQA DYMRYMLPSEASVIPGFLYMEEPGKAEKMLHPEDTKTGITYRLLPMTRSMISELLTPEQA EAHYRLIKAEMYCPDGVRLMNRPANYAGGISTNFKRAEQAANFGREVGLQYVHAHIRFVE AMAKLGKTGEVWRGLQMINPVRLQDVVPNAELRQSNAYFSSSDGKFNTRYEAQERFNELR DGSVPVKGGWRIYSSGPGIYMNQLISNGLGIRMDTGSLIVDPVLGEELDGLCFRFRILDR PVTFVYHLSDREVSRVTINGREAAAQRLPNRYRTGGLRLSGEQLKSLTEEGPNVIEIYS >gi|333604857|gb|AFDH01000104.1| GENE 5 7378 - 9537 2125 719 aa, chain - ## HITS:1 COG:lin1840 KEGG:ns NR:ns ## COG: lin1840 COG1472 # Protein_GI_number: 16800907 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase-related glycosidases # Organism: Listeria innocua # 1 709 1 711 723 696 50.0 0 MTEQQLLARIKEMTLEEKIAQLLQLAGPFFEGADGQITGPMASMGITGEMTAHAGSVLGV AGAGQVKAVQEAHLRGRPEAIPLLFMADVVHGYRTIFPVPLATGCSWDMELAEKSAEIAA REAAVSGVHVTFAPMVDLVRDPRWGRVMESTGEDPYLNGEYARAFVRGFQGADLTGDKER VAACVKHFAAYGAGEGGRDYNTVDMSERQLREQYLPAYKAALEEGCEMVMTSFNTVDGIP ASGNKRLMRDLLRGEWNFDGVLISDWGAVKELIPHGTAADEAEAALRAIEAGVDIEMMTA CYVHHLPALVASGEVDEALIDEGVLRILRLKQKLGLFDAPYRGADEEREREVVLCAEHRS VARELAQKSCVLLKNEGVLPLKPEHSIALIGPFAKSGDILGPWSWLGSQDEAVPLYDGLA AHTDPSRITVAEGCGIESGTPEQTAAALEAARGADVIVLALGEHSGMSGEACSRGDIRLP EAQLRLVAELRTLGKPMAAVLFNGRPLDLHGLIDQTDAVLEAWFPGTEGGAAIADLLFGR ANPSGRLSMSFPHSVGQVPVYYNHFNTGRPKDAQDAQEHYVSKYLDIPNEPLLPFGFGLS YTTFAYDTPTLDSARMTAEQPLTVRVNVTNTGETAGEEVVQLYIRDMAGEVVRPVKELKA FRKLFLKPGETAEVRFDLTEEQLRYHHSDLSFASDPGEFAVFVGPNSRDTAELRFRLTK >gi|333604857|gb|AFDH01000104.1| GENE 6 9886 - 11148 1513 420 aa, chain + ## HITS:1 COG:lin1841 KEGG:ns NR:ns ## COG: lin1841 COG1653 # Protein_GI_number: 16800908 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Listeria innocua # 29 420 23 414 414 466 59.0 1e-131 MKRKNWAAGIATTVLLTSVLSGCGGSNAGGSDKGSGESGGKVTLNVWGMGEEAKSLPKIA EQFEKDNPNIKINVQALPWASAHDKLLTAVASKKGPDVLQMGTTWIPEFAAAGALMDLKP MTDKYPEIKEDNFYPGSIQTTKYEDKTVGVPWYIDTRVLYYRTDLLKEAGYNEAPKTWEE LQDAAQKLTKRGSGKYGISLDPKEQSLTFMFARQNGSKLLDGKQPLFDQPQFVEAVDYLN SFFKNGSAPKDLGIDAVQGLSGDGIVPMFISGPWMVKLINDKAPELKGKWATAVLPKKEN NISALGGSNLSVFQHTEHKEEAMKFLAYMSKPETQLKWLEMTQSMPAAKKAWEDPVLKED PNYKVIGEQMKASEPMPMIKPWEEIAQAYLKSFERIYRGQAEVKPELDAFNKQAQQILNK >gi|333604857|gb|AFDH01000104.1| GENE 7 11259 - 12146 1136 295 aa, chain + ## HITS:1 COG:lin1842 KEGG:ns NR:ns ## COG: lin1842 COG1175 # Protein_GI_number: 16800909 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Listeria innocua # 1 294 1 294 297 338 70.0 7e-93 MKGFSNSKAPYFFIAPTLILLTVFSLLPIFIALVISFTDMDLAGLADYSNINFIGFKNYI SVLQDPIFIKSITNTLFYVIIGVPCVVILSLGIALLINYGASRVFKAFRVIYYLPSVTNV VAVAVVWSYLYNPAFGLFNYVLESAGFDKVPWLTDPLIAKISLILLALWRAVGLNMIIFV AALQGIPKTYYEAAQLDGASTWKQMIHITVPMLRFAIFFVSITTMIGWLQFFEEPFVMTQ GGPLDGTTSVALFIYNNGFKLSNFGYAAAGSFILFVAIIIITLIQFRFQNKDTDM >gi|333604857|gb|AFDH01000104.1| GENE 8 12167 - 13030 1076 287 aa, chain + ## HITS:1 COG:lin1843 KEGG:ns NR:ns ## COG: lin1843 COG0395 # Protein_GI_number: 16800910 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Listeria innocua # 23 287 12 276 276 350 70.0 2e-96 MAAKAAKLRPAGAGTSGSSPFFQGLVFVLLALGGIVFLIPFVWMILSAFKPESEVLRIPP TLFPETFTMENFKNLFERMNFGVYLKNTLIVVLFSFVGLFLNAMAGFGFAKYRFKGREGL FYLVLATMMIPGQVTMIPVYLILNSIELTNTLVGVVLPGLVGAFGVFLFRQFMSTIPDEL LEATRLDGASELRTFAQIVLPISKPILSVQAILTFIAGWNSFLWPLIIANDEKLYTLSVG LSLLKGQYDSNFALQMAGSAFMVVPILIIFAIFQKYIIDNYSISGMK >gi|333604857|gb|AFDH01000104.1| GENE 9 13492 - 13641 118 49 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MAVLHFQLFMAQIMFQFLQLAGLQVWQLETQELTLTMQMEIIIGHFIFM >gi|333604857|gb|AFDH01000104.1| GENE 10 13927 - 14577 516 216 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLSAAIGTVGAFFVSLVRGEMPAGTLIWIGTAVVLVMLGELVEAWKKGSLREEGPHPLMQ TAKAAGIALLSVAVVLGKFLFVGTILAKSFPVLGLPESKEALVWYGSVSIGITVLLSPLI RRAVYGEEAAQRIGCALLYALLTAAGTACLSAVFHAPVQLPLHGHAVIGLLMTLAMYFLL LLEREMKQEDGEQEELGKEQERSGRGSGISIHKSSV >gi|333604857|gb|AFDH01000104.1| GENE 11 14749 - 15498 915 249 aa, chain - ## HITS:1 COG:no KEGG:BL03094 NR:ns ## KEGG: BL03094 # Name: yfjL # Def: putative transporter YfjL # Organism: B.licheniformis # Pathway: not_defined # 6 247 2 238 240 161 40.0 2e-38 MKTRKKKKGMYIALLVLLGLLGLLVGSLYNSLNGNPLSKWLAQRELQQFMVEHYPEKRLR IEKEFYNFKFKHYEFRVKEIRAEADKGEPPEYEFSVGGWIPRVKVDGIRSANLDMVLMER LSGEAEAELQAAFARRVPAVREVTVQLEVVKGQLAENTAWTPSLKLDEPLYIHVVTDAAG ASKQQIAEAAGEIAAVLDAGGYDYGRVTINANLMDDKGEKHKNSYVKYVARFDKGGEKVS AKDVEEVTK >gi|333604857|gb|AFDH01000104.1| GENE 12 15495 - 16082 553 195 aa, chain - ## HITS:1 COG:no KEGG:BL03093 NR:ns ## KEGG: BL03093 # Name: not_defined # Def: hypothetical protein # Organism: B.licheniformis # Pathway: not_defined # 1 189 1 185 187 181 52.0 2e-44 MNDKHTVRHIIEDLLPLYEEGLLSEETARWLEAQTADDADYEKLVRLSGQSLPKPELPEP TEDYAKMMAKINRKLSLYQLLFMAISFVLAIRTSLLNESFEFVLWYAVLGFVTYLFYKQM KIVFFLSFAPVFLWSIGDSIYEIVNGSGDGGMGVIVFSPVLAAVVMASIHCLFAFIGSLM GLLALKIRKIGEESE >gi|333604857|gb|AFDH01000104.1| GENE 13 16072 - 16566 517 164 aa, chain - ## HITS:1 COG:BS_ylaC KEGG:ns NR:ns ## COG: BS_ylaC COG1595 # Protein_GI_number: 16078537 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog # Organism: Bacillus subtilis # 3 158 7 164 173 79 31.0 3e-15 MGLEELYREIQPQMYAFFYVKTQSREAAEDLTQEVFYEAVKGHGSFRGDSTVRTWLFGIA KYKLGKYYRSKKYGQELAAKLAAESRESVTPEKQVLDREDRDILLERIFRLDEVSQEIVT LRMYAELSFREIGHIIGATENSVRVRFHRIKLQLHKELEGYYER >gi|333604857|gb|AFDH01000104.1| GENE 14 16738 - 17568 1021 276 aa, chain - ## HITS:1 COG:all0261 KEGG:ns NR:ns ## COG: all0261 COG0395 # Protein_GI_number: 17227757 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Nostoc sp. PCC 7120 # 5 276 4 275 276 304 65.0 1e-82 MTTSSSKFVKVLLYAILFVYACITLIPFLWALSSSFKTLGEIVSGSINFIPKNFTLQNYY DIFVKEPLFGRWMLNSALVAVIATVCNILFNSMAGYSLARIDFFGNKLMFVLILAVQMIP AQLTIVPAYLIMKNLNLLNTYSSLTLPMMANATFIFMMRQFFVSFPKELEEAAQLDGLSR FGIFFRIALPLALPALAAQTIFVFMGAWNEFLKPLMFISDAKMFTLTLGLNTFKGQYISN WNYIMAASMVFTLPALLIYAVFNRFFIKGVTFTGGK >gi|333604857|gb|AFDH01000104.1| GENE 15 17581 - 18477 1102 298 aa, chain - ## HITS:1 COG:alr2532 KEGG:ns NR:ns ## COG: alr2532 COG1175 # Protein_GI_number: 17230024 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Nostoc sp. PCC 7120 # 11 293 16 298 301 342 64.0 7e-94 MTVHAAWKRKLRNTVTGYLFLLPTLLVLGTFLFLPVFYSMYLSVHKVSLLGQVSYKWVGL DNFTRMAHDERAWIALKNTASFVLFVVPVQTAFAILLAVVLNAKLKFKNFFRVVFFVPTV TSSAVLTLIFMWIFNTNGLLNKILEAVGLHGYNWLGDPAVALKAIMMMNIWSTAPFFMVV FLAALQDIPDALYESAMLDGAGKWRQFWSITLPLLKPATFFTVVMGIIGTFQLFDQSYIF SAGSGGPNNSTLTVALLIYQYAFKNLDFGYASALAVVLAAVILIVTLIQRRLFTEDKN >gi|333604857|gb|AFDH01000104.1| GENE 16 18558 - 19859 1728 433 aa, chain - ## HITS:1 COG:BH3690 KEGG:ns NR:ns ## COG: BH3690 COG1653 # Protein_GI_number: 15616252 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Bacillus halodurans # 2 429 1 419 420 442 51.0 1e-124 MMKKSFATLTSVLLGSVVVLSACGSGDSSTGTPAPGGTPSGGASGEKVTVTLAGWTSSAD EKELLQQTLNEFEKKNPNIKVNYEVIADQYMDVMKTRLIGGNGPDVFYLDAFEAPGLIQT GVVEPLDGYVTADFDTADFEQPLLAAFQNGGKTYGFPKDFSTLAMFYNKKDFKEAGIVNP PKTWEELQDAAKKLTKTENGKVVRYGFGAAPEIARQMYMMKAFGGQVSDDKGSATFASPE ALKGLQLVTDMHNVDKTSGEPKEVGAGWTGEMFGQGKASIVFEGNWAIPFLQTNYKDLEY GTAELPTVNGKKGTMAFPVAYVMNKDSKQKDASWKLLSYLTGKEGMKTWTSKGFALPTRK SVAAELGYDKDPLRAAIVAGASYATPWVDKATLPTIMNNFNNQFIEAYSGKAKLEDAMKK AQDTANKEISAAK >gi|333604857|gb|AFDH01000104.1| GENE 17 20024 - 22117 1831 697 aa, chain - ## HITS:1 COG:BH3691 KEGG:ns NR:ns ## COG: BH3691 COG3408 # Protein_GI_number: 15616253 # Func_class: G Carbohydrate transport and metabolism # Function: Glycogen debranching enzyme # Organism: Bacillus halodurans # 1 695 1 694 702 827 57.0 0 MDYRVIKENNLFLITDVNGDINPETGNGLYTSDTRFLSRFEIGINGEKPILLSSVADENY IAVIRLTNPHMERDGELILWRESVEIERKRFIYDGSLYETFRITSYYPKAVEFVFSVAMD ADFTDMFVVRGFQYGEIGHKTGDSFSSNGRVIKYRGADNVDRETRIRWQGPVHTVDGDGR VHFPVKLNHGESCEIAFTVSPSIKGEQPRLHDPLEAMAKLDASYAEWNGGSTGVRSDLPA FDKLYGRSVQDLRVLLTDVGHGPFPVAGLPLFAVPFGRDSLIAALQMLPLNPAIAKGTLL TMASYQGTKEDEWRDEQPGKIMHEIRYGELAGTNQVPFTPYYGTIDATPLFLLLAAEYFH WTEDTPLIEELMPHIEAALEWVDSYGDEDGDGFVEYVQKSSKGIANQGWKDSADSVVHAD GEYAKAPIALVEVQGYVYQAKTRLAPLFRALGREAGAERLEAQAAELKERFERDFWMDDE QFYAIALDGAKSRVHSVTSNAGHILMSGIASEARAAAVAKRLVAADMFSGYGIRTMSTGA AGYNPMSYHDGSVWPHDNSLCLLGMSRSGYREEALTVMQGLLKASQAFEYARLPELFCGY DDSLGYPVKYPVACSPQAWAAGTSLTFVQAMLGIVPDALKRRVTLKPALLPDMSELEVDR LRIGGGRLHLLLKRDARTGRVDVSVLGNDTGYELEIL >gi|333604857|gb|AFDH01000104.1| GENE 18 22364 - 23380 1159 338 aa, chain + ## HITS:1 COG:BH3692 KEGG:ns NR:ns ## COG: BH3692 COG1609 # Protein_GI_number: 15616254 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus halodurans # 1 337 1 337 337 388 57.0 1e-108 MVTIKDIAKAAQVSVTTVSRALNGYDDVNEETRKKIKRFADQLGYSPNMAARSLVSKKTK TLGLLLSNVTRASSKDNIAFEVLCGMNDRAGELDYDLVLFSTTPQKQKIKSYKNLCQERG VDGVIIMGIRLDDPYLEEIVSSDIPCVLIDIPLQGPNVGYVTSDNIKGAYTAVNHLIENG HSRIGMINGHAQADVSIQRLKGYTDALNNSGIPFDPTRVLDGSFSESGGKEAMYRLLSLH PETTAVFCSSDLMALGAVQAVKGLGRRVPDDISIIGFDNIDLTAYTSPSLTTVNQHKYES GYQAAQLLVDLLEGRNVSHHIVLNTELVKRESVNRLPL >gi|333604857|gb|AFDH01000104.1| GENE 19 23597 - 24445 850 282 aa, chain - ## HITS:1 COG:BS_ybbH KEGG:ns NR:ns ## COG: BS_ybbH COG1737 # Protein_GI_number: 16077237 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 3 279 4 280 283 234 43.0 1e-61 MNGGLVRLREILDDITPSERKVAEFVLSHPHRMLEMSVAQLAAESGGSQAAIIRLCKSMG VKGYPELKLKVAGDLNQSEERYEYREIRPNDSIDRIIHTVSANNIQSIRDTVTILDADTV RRAVEALSRANRTYFYGLGASNLIAQDAQHKFLRINKTSYSFTDPHLELTSAVMLNEDDV AVGISYSGETDHVIECLKEARLCGAKTISITKYGNNSVSSHADYPLYTSSTENEIRSGAM SSRMTQLNVIDILYLGVASREYDKSVGYLEKSREIIRRMTGR >gi|333604857|gb|AFDH01000104.1| GENE 20 24476 - 25180 889 234 aa, chain - ## HITS:1 COG:BS_ypjG KEGG:ns NR:ns ## COG: BS_ypjG COG2120 # Protein_GI_number: 16079304 # Func_class: S Function unknown # Function: Uncharacterized proteins, LmbE homologs # Organism: Bacillus subtilis # 8 185 6 177 224 70 29.0 3e-12 MTEQKHHILAIGGHAGDLDLTAGAVIAKYTQAGHKATFLHLTPGEKGHPRLTPEEYAKQK IEEAHKFADIVGADVKFLAYKDAELPVDEEVKYQVADVIREVKPDIILTHWKGSIHKDHA NTHYIVNDARFYAGLKTIERELPSHYANHLYYADNWEDPYDFNPEIFIDIPDEAYETWVK AMNVYAYARGETYGFPFIEYYKALTIVRGAPANFKRAQAFAVPTGALSKRVQFF >gi|333604857|gb|AFDH01000104.1| GENE 21 25225 - 26397 1208 390 aa, chain - ## HITS:1 COG:CAC0181 KEGG:ns NR:ns ## COG: CAC0181 COG1680 # Protein_GI_number: 15893474 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Clostridium acetobutylicum # 31 373 19 336 351 177 35.0 3e-44 MGYEAAASGASALGLSPEGVIAACRAVDREIAAGVTPGAVLAVVRGDEELVYAAGVADPD ASEPAAVHAGTLYDCASLTKVTVTLPLVLGLIDEGRLTLDTPAASLLPEFASGGKEEVTV GQLLTHTSGLPPLVNLYSSHLTREEMWQTVYRTPLQAKPGTRMAYSDVGYMTLGRIAEEM LGVPLDEAARDKIFGPLGMDSALFCPPAGRAADIAPTEYDASAGVRLHGVVHDENARALG GVSGHAGLCAAAGDLVRYARMWLGCGLVPAPAAGARHDAAGAETPRPRLLSRAAALASVR SFTESIPGASRGLGWALKGDPLDASGDWMGPRSFGHTGFTGTSLWLDPERDLAVVLLTNR VYYGRGKTVKVLRACVHNALAAAVVTNQRF >gi|333604857|gb|AFDH01000104.1| GENE 22 26387 - 27607 1249 406 aa, chain - ## HITS:1 COG:CAC0185 KEGG:ns NR:ns ## COG: CAC0185 COG3876 # Protein_GI_number: 15893478 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 3 388 2 381 382 355 46.0 7e-98 MQGKVKTGADRFPEMAPALLKGRKFGLLTNPTGINRDFQSTIQVCASLEEAELGALFACE HGIRGERQAGVRFEDEIDPELGIPVYSLYGKHKKPTADMLSGLQAMVFDIQDLGVRFYTY LSTLIYTLEACAEAGVRVIVLDRPNPLGGLEWEGGLLDESLLSMVGAWRMPARTGMTIGE FALLAADQMKTPCELYVVKMEGWDREMEFPDTGLPWLPPSPNMPTMDTVRIYAGHCLFEG TNLSEGRGTTKPFEQVGAPWLKAEETCRELNALNLPGVRFHPVTFTPTFSKHAGQLCNGV MTFVTDPKVYKSAVTGLHLLSRIQRLHPDEFEWLAPFKVGQSTFIDLLSGSDRIRLTLHE PGALEAIIASWERDGKEWAGIRSKYLLYGPEAAAGASATEARGNGV >gi|333604857|gb|AFDH01000104.1| GENE 23 28121 - 29062 769 313 aa, chain + ## HITS:1 COG:CAC0183 KEGG:ns NR:ns ## COG: CAC0183 COG2971 # Protein_GI_number: 15893476 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted N-acetylglucosamine kinase # Organism: Clostridium acetobutylicum # 1 276 1 274 306 142 34.0 9e-34 MDYVIGLDGGGTKTEALAIDLSGAELGTWTGGPGNPHAVTFATASTELGRLLATVKDALP GRRCLAVCAGLAGVDTAEERSTMERYLTQTLTGSAYEGVSLLIKNDAEIALKAALGSSKG IIAIAGTGSIIYAFDSEGNKYRAGGWGHLLGDQGSGYDIGLSVLQTVMKSYDGVLPATVL TEAVLQKHGIRDAAELRGIVYRPGVQKAQIAEHAELAVRAAAAGDMLARQIIVRSAEDLA DLVVALRNRHSGLDRLKIGAAGSIFAHCTLFYDTFRVNVSQEDDLSDVVLSGRRSSAGAA DYARELAASQGVK >gi|333604857|gb|AFDH01000104.1| GENE 24 29128 - 30042 837 304 aa, chain + ## HITS:1 COG:VC0206 KEGG:ns NR:ns ## COG: VC0206 COG2103 # Protein_GI_number: 15640236 # Func_class: R General function prediction only # Function: Predicted sugar phosphate isomerase # Organism: Vibrio cholerae # 1 297 6 302 305 288 55.0 9e-78 MKENIHSLTTEQQNPRTRQLDQRSALDIVTLINQEDLTVAETVRQVLPAVAEAVDWITQR LSAGGRLFYFGAGTSGRLGILDASECPPTYGTDPKLIQGIIAGGPDAILKAVEGAEDSEQ LGRDDADACGVSSKDVVVGIAASGRTPYVIGAMKRAREQGAKVIALCNNHGTPMAAIADL AIEPVVGPEVVLGSTRMKAGTAQKMVLNMLTTASMVRLGKVYDNLMVDVQPSNYKLVERA KRLIAMATGSDSEEISRAYAESQGHVKTAIVMILAKMSYEEASRRLQETGGKVRMAVESS ESAS >gi|333604857|gb|AFDH01000104.1| GENE 25 30075 - 31376 1062 433 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_1420 NR:ns ## KEGG: GYMC10_1420 # Name: not_defined # Def: GCN5-related N-acetyltransferase # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 433 1 369 369 178 32.0 5e-43 MNVRLVKPDEMTEAAALADSIFRDGEQVSMAAGFPYLFSAVTSSSFGAYGEDSRMTAFMG LLPSAVRIGSSQLNVFSVGAVCTAPEARGHGVAGKLLDAVKDQVAASDGDLILVSGTRSL YTRAGCREFGTIRRYTLTPEMAPALREAAAEAPQAGVSEGSTASLTGAGASARPASQIGA GASRGTDAAGPLLCREWTHSDLPALAKLAASREVAFEQSQWDLAVLIDAQAYARCVKLGH RVYVAERGGVPTAFLVAALPGSLRPKMTPFAIEWAGEPSAVAALLAHALETAAPEKLDVL ASRHDAGLAALLQKHAPYADERILGTVYVPDAARLFHRLKPYLAALQPEKAPLPEGSSGA AERGIRLSYPGLDDLELDADAWIALLFDGPFSLPAADANAAPVLPEGTPAQWREALTGLF PVPFPSTSGLNYI >gi|333604857|gb|AFDH01000104.1| GENE 26 31736 - 32350 258 204 aa, chain - ## HITS:1 COG:no KEGG:Swol_0293 NR:ns ## KEGG: Swol_0293 # Name: not_defined # Def: hypothetical protein # Organism: S.wolfei # Pathway: not_defined # 38 197 907 1067 1260 68 22.0 1e-10 MQAKPGGKYNGGQPSSFSNAVWDVHVNLPPQAENASVSIAGDMIRLLQIREASIELDTWA GSFRIPAGQIGIGAATGQFGPGVRLSEMTVSFEISMGRKEREALLTGEAGSGRYRLLSGP VDFAVIVSCGDKKRKLENLPDIELALPLPDGLEPDRAINVLVLDRKGSVRLLPAHRVNRK GRMMAAANGAGDGIFVLAVKRGER >gi|333604857|gb|AFDH01000104.1| GENE 27 32677 - 35151 2267 824 aa, chain + ## HITS:1 COG:VCA0011 KEGG:ns NR:ns ## COG: VCA0011 COG2909 # Protein_GI_number: 15600782 # Func_class: K Transcription # Function: ATP-dependent transcriptional regulator # Organism: Vibrio cholerae # 3 818 58 915 921 191 24.0 6e-48 MCAPAGFGKTTLLTQWAHSSGHTCAWLSLDARDNDFIRFWRTLIRSLADKAGDPAGQRLA ALTLSLQDISSSTFLDALLNELYEIPGKTVLVLDDYHLIGDARIHDSLAYFIEYLPPALH VLIASRSELPFSTVKWTAKQEQNELHTATLQFTADETAAFYRDIHNHPLTDEQIRHLAAQ TEGWVTGLQLALLSLQSGADAARFLEEFRGDHRVISDYLFEEVASKLPPDLYSFVLKTSV LQEMDAGLCDAVTESADSRVLLERAKKSNLFLVPLDERGAWFRYHHLFAGFLQELLKRKQ PEEWRRLNRLASAGCISRGFMNEAMEYAIAGEDYPLLESSLRTHMPAVLESGELGNLLRW FRSFPPDYAVPPALSLHHAFVLLMTGHAEQAEQLLERVESSLDASMEPEERKELQSGLLF VRSNLMFMTGIFDKWFTHIGTLLHEILPADPAFYTFNYNRTEPLVRRTPLGLKGVLSSDT ERIGALFTSLLEARGWHGSYIYLYVMQSLSEGYYEWNRLEDSRRLAVLVSRSAPARELPG LYVPMHLTQAMLYAAEGRFELAHAAVDEAFEAASGLRDSRWLQLLQAARIRLYLKEDRSA DVKKALPQLGLSRKDKPGFRQEFEYVTLARALGSQRKEKEALRLLELLKPQCEREQLLSG IIEIGILQALLENQRGQRTAALRHLHEALELSARNGYIRSFLDEGKAMETLLRAYARQYR LAREAAGQGGGMHDYVLKLLSLFMPASPQRKPAAPGLVEELSRSEISLLRLIRRGASNKQ MAEQLTLSEGTVKVYLSRLYEKLGVSSRTQALVTAQELKLLDAE >gi|333604857|gb|AFDH01000104.1| GENE 28 35784 - 36212 455 142 aa, chain + ## HITS:1 COG:no KEGG:PPSC2_c0342 NR:ns ## KEGG: PPSC2_c0342 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa_SC2 # Pathway: not_defined # 1 138 1 129 132 92 40.0 4e-18 MRPKHILIAGTVAFAITIGAGFWNEESTAEVQIMIPDNPAAFDKVKTAATQTAAVPVQDE LHQALGVTSDEEIYDALYNGQSLAEVAASHSRDVQDVIALQTAQLSAQLDDRLAGGSLSR EAYEAHKAELVEVITRSVANVT >gi|333604857|gb|AFDH01000104.1| GENE 29 36429 - 37709 619 426 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_4768 NR:ns ## KEGG: GYMC10_4768 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 426 1 433 433 444 50.0 1e-123 MTERIPCKSADCRATILPRTAEKTGGYCMPCVQNRQRLEREEFIRRNRRDVNLYEGITDP VEILKIMCEPRVPDPLTRYTAYEKTAEELYASLSASDAERMKAYAAALLSEDEPDIAEDI LLSLACFTGIPVHDCLPALIRKECYHPGILYKQAPAAIRDFLLDQVEKDAENRNFLLLAL AWIGDEAVAARFNQWRETPPVWAEELYVPPHQYSLEAGWTLNEEGSRSDLFYRECRTFEK GMPSGGEPVSLFGKTEEFCRGCGGEMTVLFDLDLRHPSLRFLGMEGERLKIATCLSCTCY GFLFTDIDGKGGSRWSRYNAAPAVSPVPEEDGPLEAGERPALRFSGKERGTYYAAVWTQE PAVASQVGGYPTWIQDAEYPDCPRCSGKMTFLAQFSWEDADDYGEGITYAFVCKECQVAA THFQQT >gi|333604857|gb|AFDH01000104.1| GENE 30 37832 - 39745 2091 637 aa, chain - ## HITS:1 COG:BS_thrZ KEGG:ns NR:ns ## COG: BS_thrZ COG0441 # Protein_GI_number: 16080808 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Threonyl-tRNA synthetase # Organism: Bacillus subtilis # 2 613 4 613 638 850 65.0 0 MNIQVTLPDGSVREYSRGTTIEEVAQSISPGLRKNAFGGKLNGKPVDLNTSIERDSAVEI ITPDSAEGLNIYRHSTAHLMAQAIKRIYGGKAVKLGIGPVIEDGFYYDLDLEKPLSTEDL AAIEKEMEKIAGENLPIIRRVVSREEALRIFGDMEDPLKLELIRDLPEDAEISVYEQGEF LDLCRGPHLPSTGRIKAFKLLNVAGAYWRGDSANKMLQRIYGTAFPKKAELDEHLHLLEE AKKRDHRKLGKELGLFMFSEEAPGMPFYLPKGMTIRTELESFARGLQRQREYDEVRTPFM MNRRLWEQSGHWDHYKDNMYFTDVDDTSFALKPMNCPGHMLIYKNSLHSYRELPIRLAEY GQVHRHEMSGALNGMMRVRTFCQDDAHLFVRPDQIEEEIGRVIELIDYIYGVFGFEYKIE LSTRPEDSMGSQELWDQAEASLKNVLDNRGIEYRVNEGDGAFYGPKIDFHILDALKRSWQ CGTIQLDFQMPEKFDLTYIGEDSLKHRPVVIHRAVYGSVDRFIGIITEHYSGAFPLWLAP VQVKLLPVSDHYADYAMLVKKSLDEAGIRAEADLRNEKLGYKIREAQLEKVPYMFVLGEN EKNTGTAAVRKRGEGDLGPQSIEEICGRILEEIRSKA >gi|333604857|gb|AFDH01000104.1| GENE 31 40120 - 42720 2579 866 aa, chain - ## HITS:1 COG:CAC0205 KEGG:ns NR:ns ## COG: CAC0205 COG1409 # Protein_GI_number: 15893498 # Func_class: R General function prediction only # Function: Predicted phosphohydrolases # Organism: Clostridium acetobutylicum # 356 747 60 436 652 179 31.0 3e-44 MRKYRAFPGKRMTRSISLFVVFLLLALDLAGAVSASGTAGASNGARTEAAAIKETLAQWI FKDKGSNGVFPATGGVFQSASSIRDIGTNTDQYTYESGENSVRNQGWHDGSGKKYWLAAL STKGYENITLSSQHTSSSTGPRDFKVQFSTDQQTWTDIPNGKLVLAQNNFSCPNNTCKLT NLSLPQGTGDQDVLYIRWVVSSTASVSGGTVSSSGSSRIKDVLVTGERGSGEPGEQPTTA VSRTPAPGAADAAVNTEISVTFNKAVVQDNAYKAAITDSGGAPLSGVSSAVNGSVLKISH PDLAAGKTYKVTVPKGLVKGAQDGAAPSADITWSFTTRLPDSGIKTPSLLNMTFNGDPKT SISFDWYTAETVKGTVVQVVEASKAPGGTFPADLAQSYTGSVTVIDTLMTEGDRSSKKYK KFASHKATASGLKPGTKYVYRAGNGDADGWSETGSFTTDRADNQDFHFLYVTDTQGSSKS NFELWQDTFKRAIEKTVDPKFVLLTGDLTDDGDLEQLWQWFLGVPKKEFANVPFAPIIGN HEVEDYPNNNFYNHFNLPKDVGTGAHDGSVYAFEYGDALFMQINSQYEGEVSPYKADPQF TKQLEWMRNQVAKSDKKWKFVSMHKGPYSSGDNASAEDDRVKFYRKYLIPVFDELGVDMV FEGHDHMYMRSYQMLNNVPIKNVIIDEQGHVVNPKGTVYLMGNSAASKFYELNPNADTFF AAKNEQPNKKMFVDVSITGDVLKFTSYTAVKDKPVAVYESYSIKRTDGKPAKVENASAVK QSGKAVISWKAPAGTSEPVRGYRIYEKNGRAGINWSAYVPAVSGQTAYSYTLSGTDSAQT YEFVVKAVGGRNNSEPVEISTAGGTK >gi|333604857|gb|AFDH01000104.1| GENE 32 42996 - 43403 521 135 aa, chain - ## HITS:1 COG:no KEGG:Dfer_0293 NR:ns ## KEGG: Dfer_0293 # Name: not_defined # Def: acetyltransferase-like protein # Organism: D.fermentans # Pathway: not_defined # 42 117 37 111 111 76 48.0 3e-13 MSELNQNPPEDKNSVPRETGEEGYVDVVVQKQGTSYILTGIGGTVGEMTYHMVDVDTWIV NHTFIDPKYRGRNLSRMLLDYVVAEARENGRKIIPACSYVLEQFKQNPDEFADVWLKEGE TQYSDTYSSDSVMKG >gi|333604857|gb|AFDH01000104.1| GENE 33 43837 - 44811 981 324 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_2016 NR:ns ## KEGG: GYMC10_2016 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 320 3 322 324 308 52.0 2e-82 MYLPKWSGLYVHVKWFTEDHVWNPQPMTKVITPAFLLWLGVTLAALLVCVLFSESLERIG LVHRVHQFLNGLKRYQLLILRVGVGLGLLMQLSTGTYLAPAFVSDHVWVYAVLILAIAGL LHRRLLVVSGAALAVLYGYSLITYGLFHGLDYFFYAGVIYYLLVTESRWKQSATPILYLC TGLSLAWLSMEKMTLAKLACSLMHEYGLPTLGFTVEDFVLISAFIEMGLAWAFIMGIMNR FTALLLTGVFLMTTTFFGFKEIVGHTIMHTILILFIIEGSGAAKTLYQFHRTPVMRCLFV AVNFCIVVFGLMGIYIWLGQFNLL >gi|333604857|gb|AFDH01000104.1| GENE 34 44909 - 45559 654 216 aa, chain - ## HITS:1 COG:no KEGG:BBR47_30430 NR:ns ## KEGG: BBR47_30430 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 1 210 1 210 217 219 47.0 9e-56 MKNWERPLPEPAELKRQLLHMAALDVIMSGEEWLRVYRYVPDWKADAALGIVENGAGDDV YVVFAEEGVIIKGFDHMSPLSPHAREEYGVWPGMYETAPAGLLAYLDNDLFEREDVTFCI WRQASDSAWKTGDLQEAEGEDDGSDFLLGYLKNTPEEHAEWAVSYYEKPVDLEAVRGLFA DAAVTEELIAALNPQRSAKDALAELEGLGLRANRGR >gi|333604857|gb|AFDH01000104.1| GENE 35 45766 - 46953 1282 395 aa, chain - ## HITS:1 COG:PA2933 KEGG:ns NR:ns ## COG: PA2933 COG2814 # Protein_GI_number: 15598129 # Func_class: G Carbohydrate transport and metabolism # Function: Arabinose efflux permease # Organism: Pseudomonas aeruginosa # 17 351 13 347 392 151 35.0 2e-36 MKQRNTLLIVILALGVFGIITTEIGVVGVLPQITEKFGVTASQSGLLVSLFALVVAVSGP FLTLLASGINRKRILLLSVLVFTISNLVYMMTTSYNVMLLFRILPALFHPVFFSVALVTA AKLVPPEKSGQAVTKVFAGITVGFAFGVPLTSYLAEQLSLEAAFLFGALVNGAAFMGILF WLPSMPVKERMSYGKQLGILRKPGLWLNIAAVMCLFAAMFSVYSYFAEYLGQVTRMTGSL ISAMLMVFGVVMIMGNFLFGVLLQKSVTKTVLLFPLLYVVIYLMNYWLGSYLVPMIGMIV LWGIVHSGGLIISQTWMMKESGEAPEFGNSLFVSFSNLGITIGSAAGGWFIFRLGVHQLV WSGILFAVLAFFLILIKMSVFRAQADSVEHRAAAE >gi|333604857|gb|AFDH01000104.1| GENE 36 47092 - 47403 298 103 aa, chain - ## HITS:1 COG:PA4354 KEGG:ns NR:ns ## COG: PA4354 COG0640 # Protein_GI_number: 15599550 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Pseudomonas aeruginosa # 6 103 8 100 100 94 44.0 3e-20 MEPLLIYKALANETRRQILDWLKNPAEHFDPAPYIQHGIEFKTGVCVADMQGKTGLAQSV ISSYLATMQKAGLVESERIGKWTFYRRNEKTIREFADYIRNEL >gi|333604857|gb|AFDH01000104.1| GENE 37 47662 - 47926 69 88 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKKILLTSLATLSIAASIGGSALAQEVQVTQTNLTASNVWTIHTYHVVGGTKGWSVPSFG KVSFQLVEGSSSGLKFEDNYIYFLKPGY Prediction of potential genes in microbial genomes Time: Sun Jul 17 10:01:35 2011 Seq name: gi|333604854|gb|AFDH01000105.1| Paenibacillus sp. HGF7 contig00023, whole genome shotgun sequence Length of sequence - 507 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 222 - 506 109 ## COG0582 Integrase Predicted protein(s) >gi|333604854|gb|AFDH01000105.1| GENE 1 222 - 506 109 94 aa, chain - ## HITS:1 COG:PSLT031 KEGG:ns NR:ns ## COG: PSLT031 COG0582 # Protein_GI_number: 17233417 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Salmonella typhimurium LT2 # 38 90 48 100 260 84 79.0 3e-17 ITDTRANVKRLLLQNVCDLSNNMNGLRFPCFVKSGNAEVSALHHYVPDLHRRMLLATLWN TYICINEALALTLSDFSLVPPHPYRQLFTLTTFQ Prediction of potential genes in microbial genomes Time: Sun Jul 17 10:02:01 2011 Seq name: gi|333604779|gb|AFDH01000106.1| Paenibacillus sp. HGF7 contig00067, whole genome shotgun sequence Length of sequence - 86559 bp Number of predicted genes - 69, with homology - 63 Number of transcription units - 43, operones - 18 average op.length - 2.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 216 - 253 7.1 1 1 Tu 1 3/0.167 - CDS 292 - 1080 922 ## COG2116 Formate/nitrite family of transporters 2 2 Op 1 14/0.000 - CDS 1191 - 1526 343 ## COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases 3 2 Op 2 . - CDS 1581 - 4016 2297 ## COG1251 NAD(P)H-nitrite reductase - Prom 4075 - 4134 2.6 - Term 4178 - 4226 6.8 4 3 Op 1 28/0.000 - CDS 4354 - 7989 3450 ## COG0419 ATPase involved in DNA repair 5 3 Op 2 . - CDS 8005 - 9192 1236 ## COG0420 DNA repair exonuclease 6 3 Op 3 8/0.000 - CDS 9272 - 13672 3959 ## COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) 7 3 Op 4 . - CDS 13669 - 17151 2976 ## COG3857 ATP-dependent nuclease, subunit B - Prom 17311 - 17370 3.3 8 4 Tu 1 . - CDS 17376 - 17597 242 ## - Prom 17628 - 17687 1.9 - Term 17719 - 17749 3.0 9 5 Tu 1 . - CDS 17815 - 18249 499 ## GYMC10_4263 GCN5-related N-acetyltransferase - Prom 18287 - 18346 3.2 10 6 Tu 1 . - CDS 18498 - 19421 1074 ## COG0679 Predicted permeases - Prom 19558 - 19617 1.8 + Prom 19438 - 19497 2.8 11 7 Tu 1 . + CDS 19544 - 19897 420 ## + Term 19919 - 19957 5.4 - Term 19910 - 19942 0.8 12 8 Op 1 . - CDS 19965 - 20240 367 ## gi|304408286|ref|ZP_07389934.1| hypothetical protein PaecuDRAFT_4612 13 8 Op 2 . - CDS 20297 - 20761 480 ## BBR47_19480 nuclease - Prom 20783 - 20842 4.1 - Term 20813 - 20849 2.0 14 9 Tu 1 . - CDS 20873 - 21403 743 ## GYMC10_4365 hypothetical protein 15 10 Tu 1 . - CDS 21505 - 22926 623 ## PROTEIN SUPPORTED gi|223476703|ref|YP_002580685.1| ribosomal protein L11 methyltransferase, putative - Prom 23126 - 23185 1.9 16 11 Tu 1 . + CDS 23032 - 24297 746 ## COG1283 Na+/phosphate symporter + Term 24305 - 24349 1.0 17 12 Op 1 . - CDS 24263 - 24940 624 ## COG0274 Deoxyribose-phosphate aldolase 18 12 Op 2 . - CDS 24937 - 25371 528 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes - Prom 25602 - 25661 9.6 + Prom 25558 - 25617 8.9 19 13 Tu 1 . + CDS 25676 - 26635 1042 ## COG3409 Putative peptidoglycan-binding domain-containing protein + Term 26675 - 26713 7.3 - Term 26658 - 26706 12.9 20 14 Tu 1 . - CDS 26786 - 27910 812 ## E2348C_2737 hypothetical protein - Prom 28014 - 28073 5.5 - Term 28079 - 28113 3.6 21 15 Tu 1 . - CDS 28185 - 30668 2352 ## COG0744 Membrane carboxypeptidase (penicillin-binding protein) - Prom 30722 - 30781 1.6 22 16 Op 1 5/0.167 - CDS 30876 - 31949 1156 ## COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components 23 16 Op 2 . - CDS 32005 - 33222 1214 ## COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases - Prom 33273 - 33332 3.5 - Term 33389 - 33436 11.1 24 17 Op 1 5/0.167 - CDS 33519 - 34880 1602 ## PROTEIN SUPPORTED gi|16079597|ref|NP_390421.1| hypothetical protein BSU25430 25 17 Op 2 . - CDS 34885 - 35715 749 ## COG1385 Uncharacterized protein conserved in bacteria - Prom 35757 - 35816 3.1 26 18 Op 1 . - CDS 35903 - 36607 886 ## COG1994 Zn-dependent proteases 27 18 Op 2 . - CDS 36617 - 37591 1179 ## PROTEIN SUPPORTED gi|167464491|ref|ZP_02329580.1| ribosomal protein L11 methyltransferase - Prom 37642 - 37701 3.7 - Term 37712 - 37762 9.1 28 19 Op 1 . - CDS 37884 - 38255 397 ## PPE_03208 hypothetical protein 29 19 Op 2 . - CDS 38252 - 38425 221 ## - Prom 38454 - 38513 2.3 30 20 Tu 1 . - CDS 38663 - 40006 1571 ## COG0531 Amino acid transporters - Prom 40077 - 40136 5.1 - Term 40132 - 40168 6.5 31 21 Op 1 31/0.000 - CDS 40210 - 41334 1083 ## COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain - Term 41380 - 41430 10.2 32 21 Op 2 29/0.000 - CDS 41464 - 43308 2085 ## COG0443 Molecular chaperone 33 21 Op 3 21/0.000 - CDS 43376 - 43960 606 ## COG0576 Molecular chaperone GrpE (heat shock protein) - Prom 44011 - 44070 1.9 34 21 Op 4 . - CDS 44078 - 45100 1029 ## COG1420 Transcriptional regulator of heat shock gene - Prom 45172 - 45231 2.0 - Term 45202 - 45229 -0.8 35 22 Tu 1 . - CDS 45239 - 45700 338 ## COG1246 N-acetylglutamate synthase and related acetyltransferases - Prom 45721 - 45780 8.8 36 23 Tu 1 . - CDS 45913 - 47064 1183 ## COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases - Prom 47112 - 47171 3.5 - Term 47139 - 47177 7.1 37 24 Op 1 . - CDS 47195 - 49012 1947 ## COG0481 Membrane GTPase LepA - Prom 49041 - 49100 9.4 38 24 Op 2 . - CDS 49104 - 49616 323 ## 39 24 Op 3 . - CDS 49704 - 50915 1213 ## Pjdr2_2200 stage II sporulation protein P - Term 51056 - 51093 5.3 40 25 Tu 1 . - CDS 51107 - 52108 1145 ## Pjdr2_2199 germination protease (EC:3.4.24.78) - Prom 52235 - 52294 3.1 + Prom 52194 - 52253 5.1 41 26 Tu 1 . + CDS 52312 - 52584 326 ## PROTEIN SUPPORTED gi|169188781|ref|ZP_02848825.1| ribosomal protein S20 + Term 52607 - 52655 9.6 - Term 52743 - 52769 -0.7 42 27 Tu 1 . - CDS 52848 - 53867 1064 ## COG1466 DNA polymerase III, delta subunit - Prom 53895 - 53954 4.5 - Term 54018 - 54059 -0.9 43 28 Op 1 . - CDS 54191 - 55387 952 ## Pjdr2_2196 hypothetical protein 44 28 Op 2 . - CDS 55384 - 55932 425 ## COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog - Prom 55992 - 56051 4.0 45 29 Tu 1 . - CDS 56241 - 59030 1977 ## COG2333 Predicted hydrolase (metallo-beta-lactamase superfamily) 46 30 Tu 1 . - CDS 59141 - 59269 86 ## - Term 59333 - 59375 -0.9 47 31 Op 1 . - CDS 59396 - 59875 451 ## COG2131 Deoxycytidylate deaminase 48 31 Op 2 . - CDS 59917 - 61209 1314 ## COG2873 O-acetylhomoserine sulfhydrylase - Prom 61270 - 61329 2.6 49 32 Tu 1 . - CDS 61350 - 62000 393 ## COG1555 DNA uptake protein and related DNA-binding proteins - Prom 62053 - 62112 1.7 + Prom 62009 - 62068 4.5 50 33 Tu 1 . + CDS 62245 - 63075 595 ## COG0345 Pyrroline-5-carboxylate reductase + Term 63256 - 63311 1.7 - Term 63271 - 63303 2.8 51 34 Tu 1 . - CDS 63385 - 65832 2721 ## COG0495 Leucyl-tRNA synthetase 52 35 Op 1 1/0.500 - CDS 66258 - 67046 802 ## COG0500 SAM-dependent methyltransferases 53 35 Op 2 1/0.500 - CDS 67048 - 67932 557 ## PROTEIN SUPPORTED gi|212640476|ref|YP_002316996.1| Uncharacterized protein conserved in bacteria containing two ribosomal protein S1-like RNA-binding domains 54 35 Op 3 6/0.167 - CDS 67929 - 68276 553 ## COG0799 Uncharacterized homolog of plant Iojap protein 55 36 Op 1 9/0.000 - CDS 68410 - 68976 468 ## COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism 56 36 Op 2 7/0.167 - CDS 68966 - 69553 508 ## COG1057 Nicotinic acid mononucleotide adenylyltransferase 57 37 Op 1 4/0.167 - CDS 69675 - 69971 354 ## PROTEIN SUPPORTED gi|212638657|ref|YP_002315177.1| Predicted RNA-binding protein containing KH domain, possibly ribosomal protein 58 37 Op 2 4/0.167 - CDS 69986 - 70855 1032 ## COG0169 Shikimate 5-dehydrogenase - Term 70895 - 70933 3.1 59 38 Op 1 6/0.167 - CDS 70940 - 72055 1201 ## COG1161 Predicted GTPases 60 38 Op 2 . - CDS 72142 - 72642 579 ## COG2179 Predicted hydrolase of the HAD superfamily - Prom 72670 - 72729 6.8 - Term 72824 - 72864 8.0 61 39 Op 1 5/0.167 - CDS 72908 - 75175 2340 ## COG1305 Transglutaminase-like enzymes, putative cysteine proteases 62 39 Op 2 23/0.000 - CDS 75168 - 76415 1058 ## COG1721 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) 63 39 Op 3 . - CDS 76412 - 77377 902 ## COG0714 MoxR-like ATPases - Prom 77469 - 77528 5.8 - Term 77614 - 77656 9.4 64 40 Op 1 . - CDS 77673 - 78023 518 ## GYMC10_1704 stage V sporulation protein AE 65 40 Op 2 . - CDS 78026 - 79045 943 ## Pjdr2_4029 stage V sporulation protein AD 66 40 Op 3 . - CDS 79042 - 79365 414 ## GYMC10_1702 stage V sporulation protein AC 67 41 Tu 1 . - CDS 79535 - 80410 810 ## COG2323 Predicted membrane protein - Term 80498 - 80540 9.5 68 42 Tu 1 . - CDS 80554 - 80655 69 ## - Prom 80725 - 80784 5.6 + Prom 80689 - 80748 2.6 69 43 Tu 1 . + CDS 80828 - 86539 5182 ## COG4932 Predicted outer membrane protein Predicted protein(s) >gi|333604779|gb|AFDH01000106.1| GENE 1 292 - 1080 922 262 aa, chain - ## HITS:1 COG:CAC1512 KEGG:ns NR:ns ## COG: CAC1512 COG2116 # Protein_GI_number: 15894790 # Func_class: P Inorganic ion transport and metabolism # Function: Formate/nitrite family of transporters # Organism: Clostridium acetobutylicum # 1 258 1 255 256 205 45.0 6e-53 MFTETVEKMAAAAQQKKNFLSESLLRYLTAAGLAGAYVGLGIVLIFSVGAPLFAAKSPVT TTVMGLSFGVALTLVIFAGSELFTGNNMYFTIGTLSRKVTWKDTLVNWFWCYLGNLTGAM VLVLLVVGAGVFANIKPDHLLMTIAAKKMNMDTTQLFFRGILCNWFVCLAIWTSMRAKED TAKLILIFWMLYGFIASGYEHSVANMTVLGLALILPHPETVTLAGWFHNMIPVTLGNIVG GAVFVGLLYYFISPVKRADGKL >gi|333604779|gb|AFDH01000106.1| GENE 2 1191 - 1526 343 111 aa, chain - ## HITS:1 COG:BS_nasE KEGG:ns NR:ns ## COG: BS_nasE COG2146 # Protein_GI_number: 16077398 # Func_class: P Inorganic ion transport and metabolism; R General function prediction only # Function: Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases # Organism: Bacillus subtilis # 8 109 4 104 106 112 50.0 2e-25 MNQQLQEKPETYVCIGRQGDFPARLGKTVFVGEEEIAVFHLTDGRLFALQNRSPHRRGGP LCEGMISGDLLYDPLYDWKINLLDGKVQAPDTGQVKTYPVKLDGEHVWIGL >gi|333604779|gb|AFDH01000106.1| GENE 3 1581 - 4016 2297 811 aa, chain - ## HITS:1 COG:BS_nasD KEGG:ns NR:ns ## COG: BS_nasD COG1251 # Protein_GI_number: 16077399 # Func_class: C Energy production and conversion # Function: NAD(P)H-nitrite reductase # Organism: Bacillus subtilis # 1 802 1 801 805 977 57.0 0 MNRRKLVLIGNGMAGVGVIEQILKINTGLFDITIVGSEPHPNYNRIQLSYVLEGSKTTDE IVLNDWSWYRENGIELLTGTTATALDTTAKTVTTDRGDVLPYDVLILATGSKPFILPVPG ADKEGVVGFRDIADCEAMTEAARTYRQAAVIGGGLLGLEAAKGLSKLGMEVTVVHLMDDL MERQLDPAASGMLRAELERQGLRFAMGKQTEELTGGVRVEGLAFTDGTALETDFVVMAAG IKPNSVLAAAGGLEVNRGIVVDDFMRTSAQDVYAVGECCEHRGVCYGLVAPLFEQGSVLA KHLCGVQTAPYEGTVLATKLKISGVDVFSTGEFMDSPDLTIVKMQDDWRGVYKKVLVRGS RIVGGVLFGDVSQATQLQQWIRSGREMTEDVHAVLMGIPAGEESGGGAELLADEDIVCGC NGVTKGTIVEAVRAQGLKTVDEVKACTGACRSCGGCKPLVEQILAGVLGDGYEAGTAAHG ICGCTQLGRDEIVAAMRERKLTTTRETMAALNWSNPEGCSKCRPALNYYLTMLWPETYVD EKESRFVNERLHANINKDGTYTVVPRMYGGVSSAEELKRIGDVAVKYNVRAVKMTGGQRI DLMGVRKEDLPKVWEELGMPSGYAYAKALRTVKTCVGSTFCRFGTQDSMGMGQLLEKKFE RIDMPAKFKMAVNGCPRNCAESCTKDVGIVGNDGGWEIYIGGNGGIKPRLADLAVKVKTD EELLEITSSLIQFYRETANYLERTSDWVERLGLAYIQNHVITDEANRRELVNRMETALTR AHDPWQKVIGDRRLRQELYEGVNVPVGPPTE >gi|333604779|gb|AFDH01000106.1| GENE 4 4354 - 7989 3450 1211 aa, chain - ## HITS:1 COG:BS_yirY KEGG:ns NR:ns ## COG: BS_yirY COG0419 # Protein_GI_number: 16078129 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA repair # Organism: Bacillus subtilis # 1 1211 1 1130 1130 467 35.0 1e-131 MRPIRLQMSGLQSYRESQEIDFTQLCDAGVFGIFGPTGSGKSSILDALTLALYGKVERAS GGTQGIMNHAENTLAVSFTFELSHPTGAVRYRVDRQFKRGSDVSVTNTVSRFVRLSGEEP VVLADKSTDVTNRVHQVLGLSMQDFTRAVVLPQGKFAEFLSLTGKDRRQMLQRLFHLEAY GDHLSARVSGRLKEADGLLKQIAAEQQGLGDASEEALAQAGERLKEAAEYAVVQRKLFQQ ASARYEEMKQIVSVQKDERQTELELRKTEEEEPGIRQREDNLKRAEEAEKLRPYVEHAEA SAKAEVEHRGRIAQARDRSSQAEVKLDTALQASEQARQELAGSEEPLLIRLERLNQALEQ ERQLADLHKQCEGLKTSEEHLLSQLSAVKEAFRKEQETKEKALGKQAELKEALKSVEVGY EQRSLLQEAWDAKRELDMQMRQLQELRQETGGRRRTMEAGERELAVRAGELTAWTEHFAR WLGELGAGRTEALQLRQRLAKQEETAAALLQIRKREDRERELRNLAGKLAHELHEGQPCP VCGAVEHPAPYREEEVEAEKTSPGAEECETLLRAIREAGMEADRHIFGLDSLAKRALEHE RAGTDHPQTAANKSAANSASRDETDHAAAEAALMLAEAAAAVQADLELPPDKSPVDSADR TGKADGILEAVASSAAAESLAATAGIRQGEAGISAGEALRQLAAFERPQAETARVGRLAA ELEAGFQALLKRLKPLEAGMQAAEAELRSQRAALQADETKAQALEQSIRGRAEAWQKRFG ARGLELEAVEARLKQLGEQERQAEELRGRIEKSIPFIDGVLAKIEQLRTEAAELDKTALQ LATKLQGLSQLAAEKAQQLHDRVGGEPVPRQIATAQAELDGLRTRAEQTRLAHEQARREQ QEAAQALSAAEQAAASAAGQLAEARDRLDRALKASSFADADAVRSAYVAEAQRAEWSAEA RVHREREQTLRSRLAQLREQLAGRTVSEEDWTGMLLELREAQERDEAALAVRAKAERDCE ELQAKHEQWRRLEERRSAQQTLHGRLAKLQSVLKANAFVEFLAEEQLMQVSRAASQRLGQ LTRQRYAIEVDSGGGFVIRDDGSGGVKRPVGTLSGGETFLTSLALALALSAQIQLKGEVP LEFFFLDEGFGTLDQDLLDMVVTSLEKLHMDRLAVGVISHVPELRARLPRKLIVEPAEPS GRGSRVRLELL >gi|333604779|gb|AFDH01000106.1| GENE 5 8005 - 9192 1236 395 aa, chain - ## HITS:1 COG:CAC2737 KEGG:ns NR:ns ## COG: CAC2737 COG0420 # Protein_GI_number: 15895994 # Func_class: L Replication, recombination and repair # Function: DNA repair exonuclease # Organism: Clostridium acetobutylicum # 1 384 1 396 408 282 35.0 9e-76 MRILHTGDWHLGRTLEGRSRFEEQVAFVDELVRIVREGNIDLVLLAGDVYDTVNPPAAAE QLFYDALSRLAEDGRREVVVISGNHDHPDRLGASSPIAKAQGISLIGLPKAGLMEIGIPR TGETAKLFALPYPSESRLGELLSDDAGEEVLRRAYSERVGELVKAQTSGFRPDTVNLIMS HIYVLGGKESESERPIQVGGAYTVDTSALDVGAQYVALGHLHRPQTLKAQSPIRYCGSPL AYSFSEAGQAKSLTVLDVKPGEPASIEEIYLTSGRPLVNWKAKEGLAEVHRWLDEGRDAN AWIDLEIHIEEAMSLHDIQSLRKARSGFIHIKPVYPQLQQAEEEAAVLSSAGLPVDELFR RFYERQTGGAKPEPELVQLFMELLQDHSDGPEQAE >gi|333604779|gb|AFDH01000106.1| GENE 6 9272 - 13672 3959 1466 aa, chain - ## HITS:1 COG:BS_addA KEGG:ns NR:ns ## COG: BS_addA COG1074 # Protein_GI_number: 16078127 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) # Organism: Bacillus subtilis # 291 1199 222 1067 1232 729 45.0 0 MTTTPRTKPPGTTWTDEQWDAIALRGQNMLVAAAAGSGKTAVLVERIIRRISDEASPLDV DRLLVATFTKAAAAEMKQRIREALEKELTANPDSQHLKRQLALMGRASVTTLHSFCLEVI RRHYSLIRLDPGFRIANETEAELMRHDQLEEMMEQYYGESGEDSPFWRLVDTFGGERSDV PLHLLIQKLYDESRSHPWPEHWLREMALMFGPKNYELITGRDASGEDERTAALAEVSEGY AEAAAASNSAAVGAAEEAALANAADNEDNAEGNGNEGEGEGAPAEFWLKGLTDDVRLELQ GTAELLKQALEITGQPGGPLPYANAVQDDLTMVEGLTDIAENYPWDILFSAFQTVSFGKL KPCKKDEVDPQRQEQVKQLRGRAKERITSLQEELFGRPPERFLEETRELAPVIHALVDLV IDFGGRYSKAKAAKGLVDFADLEHFCLRILRAEESAPDRLIPSRAALEYREQFAEVLLDE YQDTNRVQEAIVELIAEPLPGNRFMVGDVKQSIYRFRLAEPGLFLEKYKSFTGDGSGPGR RIDLARNFRSRAEVVDAVNFIFRQIMNEGVGDIAYDERAELVNGASYPAAEGQNLSVEMM LIDRAAAAQASDGEESDAEEADGEISAEEQEGELGGILEGQELETAQMEARAIARKIQAM LNPQDGRPYLVYDKRSGSMRPATYRDMVILLRATQQWSPIFIEELRQLGIPAYADLNTGY FTATEVEVMLSLLKVIDNPYQDVPLAGVLRSPIVGLTADELASLRISGKNIPFYEAARAY AQGIRPLGNAEGGSGLQDAGEWKPDEELRGKIADFLRRLEEWRSEARQGALARLIWKVYG DTGYFDFVGAMPGGQQRQANLRALYDRARQYENTSLRGLFRFLRFIERMKDTGGDLGTAR ALGEQEDVVRIMSIHKSKGLEFPVVFVAGLGKMFNQRDLLDPFLIHKELGFGPRFVDTKL RVGYPTLPQLAIRRRMRIETLAEELRVLYVALTRAREKLFLLGTVRSLDKQLQGWGRHLE KNSWPLPDDEVARARSYLDWLGPALMRHRDASLWREKAGLQEHSPPALAADGSKWRFEVI APEELAAMGKADESVTIQADRLEALKHLNKVPTFTGEWDVALAKSLSWTYPFAQATAYFS KTSVSELKRQADRSTASDHEEIPSAELMPSPGSGLILPTRLLKMAGAAEASRLNGEHSLG TPALPGDTEGTRAGGNSVFHLATFMDSPALVQAEERRGREAAETQDLQEPQETHGTLTSS EPIEPPGEAGGEVPAGSSSRTSLLRRPRFMEEKKLTSAERGTVFHAVMQHMPLKEVTPEA VEVVIREMIDKELLTPAQARAVDTEILAGFFRTQIGQKLAASTRVWREVPFSLGLPAGRV YPNADASTRQETVLVQGVIDCLFESDGNLIMLDYKTDRVKGVGLEALRERYRIQLGLYGQ AVEKIWKRKLAGTYLFFFDGGHVVEI >gi|333604779|gb|AFDH01000106.1| GENE 7 13669 - 17151 2976 1160 aa, chain - ## HITS:1 COG:BS_addB KEGG:ns NR:ns ## COG: BS_addB COG3857 # Protein_GI_number: 16078126 # Func_class: L Replication, recombination and repair # Function: ATP-dependent nuclease, subunit B # Organism: Bacillus subtilis # 1 1155 35 1164 1166 980 44.0 0 MILIVPEQATFQTELALVDHPDVGGTIRAQVLSFRRLAWRVMQERGGTARQPIDDVGKKL LLHKLLHKRKGDLRFYRSVYEQTGFVDRLNDLFAEWRRYCVTGESLHEHVDRYDDFLGSK KQLLRDKMRDLQLIYGAFEHEISLRYLDGEGTLAKLAEELGQSSLVRDAQIWIDGFHGFT PQELMVVKGLFEHGAGTTVSLCVNRPYYAGEIPDELDLFHPTARTMAQLQELVDAVGVGP AETVAVQPVLSPRFAASPMLAHLENSFEQRIGRYGSPYLPAGPGEREQLSLYAAVNRRAE AEGVAREMTRLAREQGVRWRDMAVMVRNMADYEDLLETAFTDYGIPHFFDQKRTVLHHPL AEFIRSALETVLHNWGYDAVFRCVKTDLLLPWNGDTEEAAAKTLTEQRAAMDRLENYVLS YGIQGNRWTDGKPWTHRSRTSLEDEETAANEAEELYLQEIQQTREWVAEPLLRFQKNLKR AKTVQSRTQALYELLEDVHAPERLEQWYAEAAADGRPEKAREHSQIWGSLMDLLDQLVEL MGEEEISAELYGELLETGLESIKLGLVPPALDQVLVGSMDRTRSMKIRYAFILGVSDGVI PASPTEDGVLAEAERELLLQTGLPMADGNRRRLLDESFLIYSSLAVPSRRLSLSYPLADE EGKSLLPSELIRQVKGLFPELREVQWMGEPSPLMSAEEQLSYMQNPSRAMSYLGVQLKQW MRGAAIGDLWWGTYNYFAGEPEWKGSMNRLVQGLLYANREDKLPRETSRLLYGRHLRASV SRMERYVACPFAHFLTHGLKLKERRVFRLEAPDIGQLFHGALNLFVRGLQEDKVDWASLS TEETYRRTSDVVDRLAPRLQGEILLSSKRYRYISHKLKQVVGKAAVMLGEHAKRSRFSPV GLEIDFGPGGMLPSLTFQLDNGCTMEIIGRIDRVDQAQGDSGLLLRVIDYKSSPTALDLS SVYYGLSLQMLTYLDVILTHAPQWLGMSATPAGVLYFHVHNPLLQFTNGMTVQDVEKELR KRYKMKGLLMADPEVVKMMDSDLAGAAGHSQLVPAALSKDGGFYKSSSVASEEQWDTLRG YVRDRIRDIGTEITEGRVDITPYRTGNKTACQHCSYKAVCQFDPALDGNEPKHLAKIGRD RVWAELTRKETGSGEEEQNR >gi|333604779|gb|AFDH01000106.1| GENE 8 17376 - 17597 242 73 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGSIVGSIKINSVSNSSNVQIGNTAYIVMSSNNKMSGGAAAFSPGDSFGSLTNNPNSVTN EPEINQGTRALNG >gi|333604779|gb|AFDH01000106.1| GENE 9 17815 - 18249 499 144 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_4263 NR:ns ## KEGG: GYMC10_4263 # Name: not_defined # Def: GCN5-related N-acetyltransferase # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 143 1 143 143 143 57.0 2e-33 MLKHIKSHTDQEKVRELLGYAVFPDPESVEEAVRFYGQAPERELYGYESEGDLIGLVGFS ADAEGTLTIHHLAVHPECRGAGYGRGQILELIQLKKPREIVAETDEDAVDFYRSIGFTVS SLGEKYPGTERFVCRYEAEPEEQE >gi|333604779|gb|AFDH01000106.1| GENE 10 18498 - 19421 1074 307 aa, chain - ## HITS:1 COG:BH2670 KEGG:ns NR:ns ## COG: BH2670 COG0679 # Protein_GI_number: 15615233 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Bacillus halodurans # 7 303 3 297 298 112 26.0 8e-25 MTYFIHIFLNNIVPLAVMILIGAAMFRAFRLDIKTLSKLNFYVFAPALVFVKLSESELSV AILGQVLLFFLLFFTAISVMTELFVRIRRYKGGMKGAMRNSIIFYNSANYAIPLNQMVFV GDAFTLSVQMIVMMMQNLLPNTLGVYNVNAHKSSWKDMLKTVAYLPTIYMIPLAFVLRHY QIAVPQPLNIPLHYIADGFMATALLTLGVQLGSMKWTFRFSDVLWSNFLRLCMGPLIGLG VVCLLGLHGVMAQALVLSCAVPTSLSSVLLAVEYDNEPEFSSQAVFMSTVLSMFTVTLVI YLLPYIG >gi|333604779|gb|AFDH01000106.1| GENE 11 19544 - 19897 420 117 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKKIVVLIFAAFFAFSANASAAYTAVSQDLYVSQASPHKASIGLWSATNEVVQLTVYSKS PNGQLSPVYSKSVAIGPAVPSPVELSVGYLAPGTYVIKGEFQGSYGSLGPVSLYPSF >gi|333604779|gb|AFDH01000106.1| GENE 12 19965 - 20240 367 91 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|304408286|ref|ZP_07389934.1| ## NR: gi|304408286|ref|ZP_07389934.1| hypothetical protein PaecuDRAFT_4612 [Paenibacillus curdlanolyticus YK9] hypothetical protein PaecuDRAFT_4612 [Paenibacillus curdlanolyticus YK9] # 1 89 1 89 91 105 61.0 8e-22 MGKRKNAGGESLDKLDYRVKVLLKEWAGLSGFYGYKSMSLDEILELVNTDGWETKVDKSD PSVRRVIMVKEDTVRKAKFFLDEKGRALKAD >gi|333604779|gb|AFDH01000106.1| GENE 13 20297 - 20761 480 154 aa, chain - ## HITS:1 COG:no KEGG:BBR47_19480 NR:ns ## KEGG: BBR47_19480 # Name: not_defined # Def: nuclease # Organism: B.brevis # Pathway: not_defined # 16 154 2 142 142 171 60.0 1e-41 MRMETMTKTRKKNKKTASIFLFLLIVLVSVVAKNTGLFDGGAGKSTSVDQTIYFPSDKYP ETAKHIKDAVAKGASPVCTIDRKGAEENRRQSLAGVATKKNYDRDEWPMAMCAEGGKGAD IAYIKPADNRGAGSWIGNQLDKLPDGTRVEIVVK >gi|333604779|gb|AFDH01000106.1| GENE 14 20873 - 21403 743 176 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_4365 NR:ns ## KEGG: GYMC10_4365 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 96 176 8 88 88 113 66.0 4e-24 MVAFKDIVPYMDHVRRQLTEVLNSFGPDEKQLREKPDGWNVTEVVEHLAKLEGMILYQLK QVVGQTPAGPSEPLDEKVTDVMGILQASGMIGKKIEAPDPAKPTGTLSYEEALQKLDEVR AATKALIPKLAERNTNDLLFPHPSGFEMNATQWAHFIAIHETAHVNQLKRIREANR >gi|333604779|gb|AFDH01000106.1| GENE 15 21505 - 22926 623 473 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|223476703|ref|YP_002580685.1| ribosomal protein L11 methyltransferase, putative [Thermococcus barophilus MP] # 31 464 12 386 396 244 34 1e-63 MKCFPSRQDGGFGRRKEPYNGSNRLTEKRKKRLEQGHPWIFASEIERVEGEPVPGQVVEV RTHAGQPLASAYYNPKSQITGRVVSYKPLEAMTKEFFVERFGRCARHRARFLQDSDSYRL VYGEADFLPGLTVDKFADVLVVQILTLGMDVCREAITAALVEVFAPQGIYERSDVPVREL EGLTQTTGPLYGECPRYVRILENGLHIEVDIEQGQKTGYFFDQRENRAATEPLMTGWGAE SGIAVREVEHEGQMRRLPVNANGKVVTFPYWDGATVLECFSHTGSFTLHACKYGAKKVTC LDISEHAVESARTNVSLNGFEDRVEFVVADAFDYLRKQVKGVEERRQRAQAGQGAKVDTS KPVGEGRTWDVVILDPPAFAKTRSAVEGACRGYKDINLHGMKLVNEGGYLVTASCSYHMA PELFLETVHAAAVDAGKILRLVEFRAAGKDHPRLLGVDEGNYLKFAIFEVRSR >gi|333604779|gb|AFDH01000106.1| GENE 16 23032 - 24297 746 421 aa, chain + ## HITS:1 COG:SP0496 KEGG:ns NR:ns ## COG: SP0496 COG1283 # Protein_GI_number: 15900410 # Func_class: P Inorganic ion transport and metabolism # Function: Na+/phosphate symporter # Organism: Streptococcus pneumoniae TIGR4 # 2 115 5 118 543 106 44.0 1e-22 MWLSLALPLLAGLSVFLFGMKMMELALNQLAGPQIYRFLETATRTPAHGLVTGTALTALL QSSSAVTVISIGLVNAGVLTFPRTLGIILGTNIGTCLTTELIGLNLGAAALPLLLASSAV WLASWLPGPARGRQPAGAAARGGNRPGGYAFGGAKTGPAGTPAPATRGGGIAEGRPAGSA RTGDGPAADCPAPDRARPPVRSAAPASSPPHDVVRPASRQAGARGPAQEPPAGRGWLHAV RYAALAAAGFALVLIGIRIMQSIGPALQHQGLFAWFIEQARVSLLWGVIAGAVVAALIHS SSAVIVMAMGFAASGVISPELGIAVTLGSNVGTCVTAWLASIGGTRAGVFVAWSHILLNV GGTVLFFPLIGLLHEVSTWMTADPSAQIARAQTLFNVASSLIALPFCYLPFSRKKNLQPR T >gi|333604779|gb|AFDH01000106.1| GENE 17 24263 - 24940 624 225 aa, chain - ## HITS:1 COG:HI1116 KEGG:ns NR:ns ## COG: HI1116 COG0274 # Protein_GI_number: 16273041 # Func_class: F Nucleotide transport and metabolism # Function: Deoxyribose-phosphate aldolase # Organism: Haemophilus influenzae # 4 224 3 221 223 212 53.0 5e-55 MTAAGDLASYIDHTLLKPEARSGDIRKLCGEAKEFGFYSVCVNSGWVPLCREELQGTAVK VCAVVGFPLGASLPEVKAFEAAKAAEYGAEEIDMVLAVGSLLEGNAEAVRDDIRQVVDAV KGRAIVKVILETGFLSDEQIVLACRLAEEAGAAFVKTSTGFGPGGATVEHVRLMRLSVSA AVRVKASGGVRDLETARSMIEAGAQRLGTSSGVALMSGAAGSSSY >gi|333604779|gb|AFDH01000106.1| GENE 18 24937 - 25371 528 144 aa, chain - ## HITS:1 COG:ML2698 KEGG:ns NR:ns ## COG: ML2698 COG0494 # Protein_GI_number: 15828458 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Mycobacterium leprae # 3 109 67 179 251 67 39.0 6e-12 MKEISGGGVVFRKQEERTEVQLIQDRFGKMTLPKGKMEPGETIEETALREIAEETGITGR IVEPLDVISYRYEHPEHGTVEKEVHYYLVEAVGGDLQAQIEEISGVEWMSPETAWKRQAE SGYDNNDGVVLAALQKLGYEVRLV >gi|333604779|gb|AFDH01000106.1| GENE 19 25676 - 26635 1042 319 aa, chain + ## HITS:1 COG:BH1295_1 KEGG:ns NR:ns ## COG: BH1295_1 COG3409 # Protein_GI_number: 15613858 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative peptidoglycan-binding domain-containing protein # Organism: Bacillus halodurans # 190 317 88 224 459 108 48.0 1e-23 MIAVTCTGLMFSSLMIANSASATETCGGYLSNMTDPLAIRMENGEKVIWDNVDPVLIQKR DKYVSLLKQKNWTITFNSAYRPYQYQRHLYEIVQNASKSSCVAAEKAAHGLGTEVAKPSN TAPHTRGIAFDAIVKDSAGNALNGRTFVNSQLKDVAAQAGLSFPLPTTDGVHHIVAGGST TPDDGVLRLGDQGPEVTELQQQLNKVGYTVSTDGIFGSGTDTAVKQFQSAHGLVSDGIVG VATNAKLDTLSTTTTVLRSGSSGDEVKVLQRLLTKKGYTVTADGIFGSGTDTAVKKFQTA NSLTSDGIVGSATWSKLRQ >gi|333604779|gb|AFDH01000106.1| GENE 20 26786 - 27910 812 374 aa, chain - ## HITS:1 COG:no KEGG:E2348C_2737 NR:ns ## KEGG: E2348C_2737 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_0127 # Pathway: not_defined # 71 361 37 328 335 129 33.0 2e-28 MKKIFVHTVLFMFVWVFITSVYSSVSFAAFVSGSDEKSGDPASAEAPANNEFNLSLFGEP QRGGTQYIVKEGSSVQIAHKYNSGSDMWIVFDHAGANKLYGMKEWRLSSNTDKHTSPDLS RPSVVLWPDISDWIGPYIAGADRNGNGNGQDFTGGNHNYDGGENSSATARTVHYKVTVDG KELQDGKIASGKVKIEVVNRIQGYNTKEADGSGREILQETVSYEIEGGKVRVRTDIEPLE NITLYRYYGLQSVNGAWNREVRYYAGKTEVARSEAGKYSDSGMKSLHPDVDKYLLGSASQ NGFRHQLLVSLDRHYGLGKLHYLAEDQPVVFTQEYGKSYFLQVYNKPAALRKGEKVGWRG GYSFFSAASQEKID >gi|333604779|gb|AFDH01000106.1| GENE 21 28185 - 30668 2352 827 aa, chain - ## HITS:1 COG:lin2331 KEGG:ns NR:ns ## COG: lin2331 COG0744 # Protein_GI_number: 16801394 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase (penicillin-binding protein) # Organism: Listeria innocua # 38 675 45 666 714 422 38.0 1e-117 MLHTQLDGGGRMTDTEQTDKPGKKNRTTPKKKRKARKIAGFVVLGALVVVLGAGAWAAKT GIEMYRQTDLSKLAQEPPMPLRIYDANKELITELTNSRMEYVPYSAFPKELTNAIVAVED SRFYEHDGIDYKGLSRALFTNVKNGEVVQGGSTITQQLAKVKLFSSEQTLERKINEAVAA LKIENNYGKEQILELYLNYIYYGRGAWGIERASQIYFGKNTSELTLAEAALLAGLPKSPN AYSPLNNPDKAKERRDLVLGMMASQGKITAEERDRAQNEPIKLTENTSLSASNKYPTYVD YVIQETLDKTKMSEQEILSAGLEIYTNLDPKVQDAAEAVYRDKKNFPGDKGGLQSSVVVL DAKTGAVKGLVGSRSETKEFRAFNYATQLQRQPGSTIKPVVVYTPALLAGFKPQDLINDA ETEFAGGYKPNNYGHRFHGWVTMEEALAQSYNVPAVALMKEVGVEKALAFGRKAGLPLED DDQVYGLALGGMKYGTSPLVMAQAYTMYANGGNLAHAYAVTQVKDRSGNVILEQKTKTAR VIDADTAYTMSEMLQKVITEGSGRNARLNRDVAGKTGTTQLPDVAEFRTSSGGVIDGSKD AWFVGYTPELVTAVWVGYPVTNREHYLTTGGDKLPAAIFQKIMSQALKGQPLTAFKAPQG YRLAGGKIQRINGENGKAYAAVDSRERKSGSRTRTEDSTDGEAPATPSPLPSQAPADGAG TAPGGKETPAGTGSPPPKNGTGSVKPPVAGKEPPEGTEKPSGEATPQPSPGVKPPEGEAA PTASAKPTPKPPAKKEEGGAAGSGVSASRPSTVPSPSPSDEGAAAGN >gi|333604779|gb|AFDH01000106.1| GENE 22 30876 - 31949 1156 357 aa, chain - ## HITS:1 COG:BS_ssuA KEGG:ns NR:ns ## COG: BS_ssuA COG0715 # Protein_GI_number: 16077949 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components # Organism: Bacillus subtilis # 28 356 11 329 332 330 52.0 2e-90 MKAARKTAPAADERRRGYRWAAPFALLMILLLSGCIGKGEQAVTEGAAPAGKSGKDKVTV SIGIQQSLGPLLIAREKKWFEEAFEEAGAEVKWQEFQSGPPHFESITAGRLDFGIVGNGP VIAAQAGKVEFKEIAVSGDGKKGNAILVPKGSPLQTVRDLKGKKIAVAKGSSGWIFLYRA IVQAGLKPDDIKIVQLQPDEARPAFQSGAVDAWAIWEPFITSEVVTGGASVLADGKQLDL LGPGFIVARSGFTREHPDLTVLFLKTYEKARFWLTEHQEEAVGILAKSKKLDPGIVRKVL SNLEALNAVITPEFVEAQQSTADFMFSQDAIKQKIDVTRVVDNSFIEQALKQVAAGK >gi|333604779|gb|AFDH01000106.1| GENE 23 32005 - 33222 1214 405 aa, chain - ## HITS:1 COG:ECs1018 KEGG:ns NR:ns ## COG: ECs1018 COG2141 # Protein_GI_number: 15830272 # Func_class: C Energy production and conversion # Function: Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases # Organism: Escherichia coli O157:H7 # 12 379 7 347 381 296 45.0 4e-80 MGNAVPEVEFGWFIPTTGDGKYIGVEPERESSADYMIQVAQAAEEAGFTFALIPTGGSCL DAWIVGSIVASHTKTLKPLVAMRPGLIAPVLAARMAATLDVLSGGRALINVVTGGSPSDL SATGDPLAGDHDERYVRTREFLHIVRSVWTRSNDGGEKFLAGGGYKYGDSEKVEFSGKYY RLEGGAALPLPVQKPYPPLYFGGSSEAGKRTAVETSDVYLMWAEPLAWIREQIREVEEIR AEVKASTGKERELRYGLRAQVVIRETEEEAWKDAWEIISKVDNSAIEWSSHRFKETDATN QQRQNSLREGSRANGYLIGPNLWAGISIVRGGGAMTFVGSAEQVADRLLEFTDIGISSFI LSGYPNLEEARITGDLLLPVFKRKLAEREVAAEITFSGHKEKIEA >gi|333604779|gb|AFDH01000106.1| GENE 24 33519 - 34880 1602 453 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|16079597|ref|NP_390421.1| hypothetical protein BSU25430 [Bacillus subtilis subsp. subtilis str. 168] # 1 451 1 451 451 621 65 1e-177 MSTVAFHTLGCKVNFYDTEAIWQMFKGEGYEQVDFEQTADVYVINTCTVTNTGDKKSRQM IRRAVRRNPEAIVAVTGCYAQTSPAEIMAIPGVDLVIGTQDRDKIISLVKQFQQERQPIN AVRNIMKTRQFEELDVPDFADRTRAFLKIQEGCNNFCTFCIIPWSRGLMRSREPESVVKQ AHMLVDAGYKEIVLTGIHTGGYGEDMENYSLARLLWDLDKVDGLNRIRISSIEASQITDE VLEVLGASDKMCRHLHIPLQAGNDQVLARMRRKYTTAEYGRKIELIHKALPGAAITTDII VGFPGETDEMFREGYAFMEQMKFAEMHVFPYSKRTGTPAARMLDQIDEEIKNARVHELID LSENMQLEYAKQYVGKQLEVIPERAYKGAAEDSGLLMGYSDNYMQMVFEAPEEMIGRVCT VEVQEAGVNESKGKLIRVAEEQSAPANRIKAIV >gi|333604779|gb|AFDH01000106.1| GENE 25 34885 - 35715 749 276 aa, chain - ## HITS:1 COG:BH1350 KEGG:ns NR:ns ## COG: BH1350 COG1385 # Protein_GI_number: 15613913 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 1 274 1 249 250 182 41.0 8e-46 MQRYFIPAGDFGADSVAITGDDAHHLARVMRGEEGDRCICSDGVSREAIVEITAVDKNRV EAKIVETLEMSAEPAVEVWIAQSLPKGDKMETVIQKGTEIGAARFLPFVSERTVVQYDAK KEAKRSERWNKIAKEAAEQAHRNRIPVIESVLSWKALLKLVSEAADGAWICYEKEDGFGI GTAIRRYFGSRDSRTDEIGAPRKAADGAGADSAAEGKPSRLLLLVGPEGGFTEQEIREAE AAGCVSVSLGRRILRTETAAMVGLACILYESGEMGG >gi|333604779|gb|AFDH01000106.1| GENE 26 35903 - 36607 886 234 aa, chain - ## HITS:1 COG:lin2708 KEGG:ns NR:ns ## COG: lin2708 COG1994 # Protein_GI_number: 16801769 # Func_class: R General function prediction only # Function: Zn-dependent proteases # Organism: Listeria innocua # 8 221 9 213 217 161 43.0 1e-39 MGDFSAILQLLPFTLLVLIIAFTVHEFAHAYSAYKFGDPTAYKEGRVTLNPRVHLDVLGT LLFIIAGFGWAKPVPVRRSNFKKPRLMGVIVSFAGPFSNLVLGFLGIIVFYVLLNYTGID GWSAGVQKAVLIFMILFVKMNVLLFILNLLPVPPLDGYRILEDVLPDAGREKLRQYEQWG MLVLLLVAFIPPLYRVTLGPIFSLQYDIIYAFNDLIGSLFGERLPIDQFFRLIG >gi|333604779|gb|AFDH01000106.1| GENE 27 36617 - 37591 1179 324 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|167464491|ref|ZP_02329580.1| ribosomal protein L11 methyltransferase [Paenibacillus larvae subsp. larvae BRL-230010] # 1 323 1 321 322 458 69 1e-128 MRWHEITVNTTEQAVEMISNFLHEFGAGGVSIEESGTLNKKRDTSLGQWYELPFNDIPEG RAVIKGYFVEGTELDSIMSTLKQSVEGLAEFGIDTGNPSYELREVDDEDWANAWKQYFKP VRITERLTIKPTWEEYTASEGELILELDPGMAFGTGTHATTSLCLKTLEEVIKGGEDVID VGTGSGILSIAAAKLGARRVLAVDLDPVAVSSASENSKLNGLEDTIHVKLSDLLGVFKES EAGGGADLGVKLPVQVVVANILAEIILLFLDDVYKVLAPGGYYVVSGVILSKQKDVENGL LAAGFEVEDVRRDGEWVVLIARKR >gi|333604779|gb|AFDH01000106.1| GENE 28 37884 - 38255 397 123 aa, chain - ## HITS:1 COG:no KEGG:PPE_03208 NR:ns ## KEGG: PPE_03208 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 1 121 1 122 124 122 56.0 5e-27 MSEKSILATFRSPEEAEGASAKLKALRVIDMQIARFDRFQGEDVQQQMNPLNGDFASLGN LTQSAEWYSPDAGILAAADPTASGMSDGGSGMPTGRDILLTVVVDESTHHQAMRVIRECG GEI >gi|333604779|gb|AFDH01000106.1| GENE 29 38252 - 38425 221 57 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSENRNEHEEISEQISQLIPIGKNEDVEFSSEEADAEDLEALQRANAADSRQERQGS >gi|333604779|gb|AFDH01000106.1| GENE 30 38663 - 40006 1571 447 aa, chain - ## HITS:1 COG:PA2041 KEGG:ns NR:ns ## COG: PA2041 COG0531 # Protein_GI_number: 15597237 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Pseudomonas aeruginosa # 6 441 12 448 456 454 54.0 1e-127 MKPNMELQRTLKLWHIVVIGLGYMAPMAVFDTYGIVSEETGGHVPAAYALTLLAILFTAS SYGKMVRVYPTAGSAYAYARNTIHPYAGFLVGWAALLDYLFLPMINALLTGIYLSAVFPE IPAWIWIVGFVLFITALNLLKVKITASVNTFLVLFQIVVVVLFAALAVKGLMNGQGVGEV FTAQPFYAPDMSIPALLVGASILCFAFLGFDAVSTLTEETVDPEKNTPRAIILVAMIGGI LFMTASYFTQSLFPDVSVFEDPEGASPEIALFIGGKVFQLVFLAAALSSTLASGLVSLTS VTRLLYAMGRDSYLPRKFFGYVHPKTGTPVYNVLFIGCISLIALKLDLVTATSFINFGAL IAFTFVNLSVIIHYIFKKKQRSFGDYMRYLVAPLIGAGFVAYIWTHLDRHSMTLGLIWTA VGVVYLIYLVAVAKRDVKKIQMDDSGS >gi|333604779|gb|AFDH01000106.1| GENE 31 40210 - 41334 1083 374 aa, chain - ## HITS:1 COG:BH1348 KEGG:ns NR:ns ## COG: BH1348 COG0484 # Protein_GI_number: 15613911 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: DnaJ-class molecular chaperone with C-terminal Zn finger domain # Organism: Bacillus halodurans # 1 373 1 370 370 446 66.0 1e-125 MSKRDYYEVLGVGKDASAEDVKKAYRKLARQYHPDVNKADDAETKFKEAKEAYDVLSDDQ KRSTYDRFGHVDPNQGMGGGGMGGADFGGFGDIFDMFFGGGGGGRRNPNAPQRGSDLQYN LQIEFKEAVFGKELDLQIPRTENCDKCSGSGAKPGTHPETCTTCQGSGQQEVVQNTPFGR IVNRRPCSTCNGQGKIIRHKCGECGGSGKVKKQRKIHIKIPAGVDDGAQLRVSGEGESGT RGGPAGDLYVVIHVKAHEYFERRDDDIYLDMPLTFVQAALGAEVEVPTLTEKVKLKIPAG TDTGTYFRLRGKGVPKLRGYGQGDQHVRVVIVTPKNMTDEQKDLLREFAKVSGEDTKEHE ESFFDRMRKAFRGD >gi|333604779|gb|AFDH01000106.1| GENE 32 41464 - 43308 2085 614 aa, chain - ## HITS:1 COG:BH1346 KEGG:ns NR:ns ## COG: BH1346 COG0443 # Protein_GI_number: 15613909 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone # Organism: Bacillus halodurans # 1 613 1 614 614 824 78.0 0 MSKVIGIDLGTTNSCVAVMEGGEAVVIPNAEGNRTTPSVVGFKKDGERVVGETAKRQSIT NPDRTIISIKRHIGTNHKESIDGKDYTPQEISAIILQKLKADAEAYLGSPVTQAVITVPA YFNDSQRQATKDAGKIAGLEVLRIVNEPTAAALAYGLEKSEDQTILVYDLGGGTFDVSIL ELGDGFFEVKATSGDNKLGGDDFDQVIIDHLTAEFKKEHGIDLSKDKAAVQRLKDAAEKA KKELSSVLTTTVSLPFITVVDGVPQHLELNLTRAKFEELSASLVERTLGPTRQALSDAGL SPSQIDKVVLVGGSTRIPAVVEEIKKLIGKDPHKGVNPDEVVALGAAVQAGVLTGDVKDV VLLDVTPLSLGIETAGGVFTKMIDRNTTIPTSKSQVYTTYADNQTSVEIHVLQGERAMAN DNKTLGRFMLGDIPPAPRGIPQVEVTFDIDANGIVNVSALDKGTGKSQKITITSSSGLSD DEIDKMMKDAEAHAEEDRNRKELVEVRNQADQLVYSTDKTIKELGDKVDQAEIDKANAAK EKVKQALEGNDLAAIKAATEELTEVVQQLSVKLYEQAAQQQGAGDAAGEASEAGKKDNVV DADYEVVDEDKDKK >gi|333604779|gb|AFDH01000106.1| GENE 33 43376 - 43960 606 194 aa, chain - ## HITS:1 COG:BH1345 KEGG:ns NR:ns ## COG: BH1345 COG0576 # Protein_GI_number: 15613908 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone GrpE (heat shock protein) # Organism: Bacillus halodurans # 51 193 51 193 194 129 55.0 4e-30 MSTEETKNINPDTNAAEAEEATYDAEHAEAAEATAPDAEGAASGRNAELDELRKAAEESQ QRLLRAQADFDNFRRRTRQEKEEFAKYASLKLIEQMLPVIDNFDRALVSSRETQDFEALT KGIEMVYRQLEQLMTQEGLTPIEAVGQPFNPEFHQAIMQVESDDYEEGIVVEEVQKGYML KDKVIRPSMVKVSM >gi|333604779|gb|AFDH01000106.1| GENE 34 44078 - 45100 1029 340 aa, chain - ## HITS:1 COG:BH1344 KEGG:ns NR:ns ## COG: BH1344 COG1420 # Protein_GI_number: 15613907 # Func_class: K Transcription # Function: Transcriptional regulator of heat shock gene # Organism: Bacillus halodurans # 1 340 2 341 343 353 52.0 3e-97 MTERQRMILNAIVDDYIRSAEPIGSRSISKRGDVGFSPATIRNEMSDLEELGFLEQPHTS AGRIPSHKGYRYYVDHLVRHGTLDAHELETVKLFFAEKVQEMEEVIQHTANMLSGLTNYT SIVLGPEVFTNTLKHLQIIPLNDKTAVAIIVTNTGHVENKTVAIPPGLPMNEIEKVVNLL NARLQGVPLLQFKSKLYTEVAGELNKYAVGYHELLNMVESVLENDEKDRIFLGGTTNMLT QPEFKDVDKVKNILDLLEQTPVLFKLVTSSPTGLQIKIGSENSLAAMNDCSLITATYSYD DQPLGTIGILGPTRMEYAKVIRLLEHLSANMEVLLSRWYK >gi|333604779|gb|AFDH01000106.1| GENE 35 45239 - 45700 338 153 aa, chain - ## HITS:1 COG:aq_1359 KEGG:ns NR:ns ## COG: aq_1359 COG1246 # Protein_GI_number: 15606556 # Func_class: E Amino acid transport and metabolism # Function: N-acetylglutamate synthase and related acetyltransferases # Organism: Aquifex aeolicus # 6 152 16 162 181 120 42.0 9e-28 MTVACRRATEDDIEELVHIIQGYARQGIMLPRDREMVRQHLDTFVVAEDEGALIGCGSLT RLGENLVEIRSLGVSEDYKGQGVGTKLVDSLLEEAQRLTVTKVMALTYEVKFFQKNGFRI VPKHIFPEKVWTDCIHCKKQYCCDEIAVLRELD >gi|333604779|gb|AFDH01000106.1| GENE 36 45913 - 47064 1183 383 aa, chain - ## HITS:1 COG:lin1513 KEGG:ns NR:ns ## COG: lin1513 COG0635 # Protein_GI_number: 16800581 # Func_class: H Coenzyme transport and metabolism # Function: Coproporphyrinogen III oxidase and related Fe-S oxidoreductases # Organism: Listeria innocua # 1 382 2 385 385 347 45.0 2e-95 MNTRYTAPEAVYIHIPFCTNKCFYCDFNSYVLKGQPVMDYLDALEREMERTVQAQPPGKI ATIFVGGGTPTVLLPDQMTHFLKLVRTYFPAQHENLEFSMEANPGTTDLEKLTAMKEGGV NRISFGVQSFDNGLLETIGRIHNTDDVYRSLENTAKAGFDNMSIDLMFGLPNQTPEMMEK TLNAALALDLKHYSIYSLKVEENTLFHTMYHKNQLPLPSEDDELDMYLLIMRRLKEAGYG QYEISNFARPGYESRHNTTYWRNQPYYGLGAGAHGYAEGHRHVNVKGVQPYIDRTKEGLP HLERFPVTEQEAMEDFMMVGLRLLEGISGDDFTAQFGVPVEEKFGGILDSLIKRGLLERA GNKIRLSEQGILFGNDVFASFLE >gi|333604779|gb|AFDH01000106.1| GENE 37 47195 - 49012 1947 605 aa, chain - ## HITS:1 COG:BS_lepA KEGG:ns NR:ns ## COG: BS_lepA COG0481 # Protein_GI_number: 16079605 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane GTPase LepA # Organism: Bacillus subtilis # 6 605 9 608 612 965 79.0 0 MTDIRQRQKQIRNFSIIAHIDHGKSTLADRILEFTGALSSREMQEQVLDQMDLERERGIT IKLQAVRLNYKADDGQEYILNLIDTPGHVDFTYEVSRSMAACEGALLVVDAAQGIEAQTL ANVYLALDNNLEILPVINKIDLPSADPERVKQEVEDVIGLDASEAVLASAKAGIGIKEIL EQVCQKVPAPQGDPDEPLKALIFDSHYDPYKGVIVYVRVVDGAIKAGTKIKFMATGKVFD VIEVGAFKPRMSIVDELNVGDVGFVVAGIKNVGDTRVGDTVTNAVKPAAEPLPGYRKINP MVFCGLYPIETSDYNDLREALEKLELNDASLTYEPETSSALGFGFRCGFLGLLHMEIIQE RIEREFNIPLITTAPSVIYRITMTNGEIMEIDNPSNYPDPQRIEYVEEPYVKASVIVPND FVGAIMELCQGKRGEFINMEYLDTNRVTLSYDIPLAEIVYDFFDLLKSRTKGYASFDYEI SGYKKSNLVKMDIMLNGEQVDALSFIVHRDGAYNRGRIICEKLKELIPRQMFEVPIQAAI GQKIISRETVKAMRKNVLAKCYGGDISRKRKLLEKQKEGKKRMKQVGSVEVPQEAFMAVL RIDDN >gi|333604779|gb|AFDH01000106.1| GENE 38 49104 - 49616 323 170 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MPRWYWKLFVYGIILCFCTMFGVDLASRGMNRIEGPGGGSGGAARTSGSSPAAPGSLPEE TFIRTGGGRSGGQQPGVPSQAPGPGAAAPSPAAGPDAAAGNAGSARTAESANRPAETPAP PKPTPRPLGTGDPLEAGSMNHLGNKLGDLLQITAQSGMDGVVSMFEWVVK >gi|333604779|gb|AFDH01000106.1| GENE 39 49704 - 50915 1213 403 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_2200 NR:ns ## KEGG: Pjdr2_2200 # Name: not_defined # Def: stage II sporulation protein P # Organism: Paenibacillus # Pathway: not_defined # 1 396 1 416 418 312 42.0 2e-83 MKRNAVTFNLSKIRQTFQSAGVIGKTTISLSLFTLCLFILLGVGSMLQSRLSTSPVSSMK GLAASVSNQFFLDMLGLEVPHLRNDTRKFTFSQQNMMSFAVRFLTDVNPGDPKSLIAQEV PGLKADKSTVLRSGKDGDASSPVEYTPAEGAVNGTAGGTAPEASSAPSPAPSQAPADQKP KGPGRNIAFIYQSHSNESFLPELKGVTDPDKAYDAKTNVTMIGKKLAEALEKEGVGAVHS DAIYPNMIKDFKYAYSYKYSLQTLEAAANAHPDLKFFFDIHRDSQERKRTTVTLNGKDYA QVYFILGGDNPKWKENEAFAGKIHDTLEAKAPGVSKGIHAKTGHEVNGVYNQNFSPNSVL IEVGGPYNSLEECYRTVELLAKAVSEVILDAEKVTAPAQGKKS >gi|333604779|gb|AFDH01000106.1| GENE 40 51107 - 52108 1145 333 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_2199 NR:ns ## KEGG: Pjdr2_2199 # Name: not_defined # Def: germination protease (EC:3.4.24.78) # Organism: Paenibacillus # Pathway: not_defined # 3 333 5 335 335 451 70.0 1e-125 MADLSAYTVRTDLALEARELASEARKSPEIPGVVSDIWEDGGMRITQIQVLNDEGAQAIG KMPGQYMTIEVPDLRKKDTQLQDRVATKFAQVFEQYLQKAGIGKDSKVLIVGLGNWNVTP DALGPLVVENILVTRHYFELMPGQVSPGYRPVSAVAPGVLGTTGIESSEIVEGIVEKSRP DLVIAVDALASRALERVNTTIQIADTGINPGSGIGNKRRGLTLETLGVPVIAIGVPTVVY ASTIVNSCIDMMQHHFRTQTSNTHEILGMLDDLPEQERLSLVREVLNPLGHDLLVTPKEI DEFIEDIANIIASGLNAALHEAVDSANVAAYTH >gi|333604779|gb|AFDH01000106.1| GENE 41 52312 - 52584 326 90 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169188781|ref|ZP_02848825.1| ribosomal protein S20 [Paenibacillus sp. JDR-2] # 1 89 1 89 90 130 77 3e-29 MPNIKSAIKRVKVSEKRRLRNASEKSALRTAVKAFETTVASNNVDSAKEALINATKKLDK AASKGLIHKNAASRKKSRLAKKLNALSAQG >gi|333604779|gb|AFDH01000106.1| GENE 42 52848 - 53867 1064 339 aa, chain - ## HITS:1 COG:BS_yqeN KEGG:ns NR:ns ## COG: BS_yqeN COG1466 # Protein_GI_number: 16079610 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, delta subunit # Organism: Bacillus subtilis # 8 326 7 325 347 226 39.0 5e-59 MDYKQAMKSIDEQKFAPVYVAYGSESYLIEQFIRKLTDKMIEPEHLDFAVSKYDLNEVPV QNVIADAETLPFMVPRKLIIAGNAQFLTGSRDSGKVDHQLDRLTEYLGAPVDFTVLVFTV SVDKLDERKKLVKQLKEKKALVPCLPLTAEELQAWVRRQAKRESFELAEGVVDQLVLYTG GHLQSLAAEIEKISLNVGRGGTATPELIDSLVVRSTEQNVFILIEQVVQLRLDRAFALLE ELLKQKEEPIKIVMLMARQFRIMLQVKELSKQSYSHQQIAGQLGLHPYAVKVAEGQARAY DIEKLSRIVSQLADLDFKMKSGGIDKVLGLELFLLGLAA >gi|333604779|gb|AFDH01000106.1| GENE 43 54191 - 55387 952 398 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_2196 NR:ns ## KEGG: Pjdr2_2196 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 1 395 1 349 354 96 27.0 2e-18 MNCKEVKELMQRDLDGDLNDLERQRLNQHVQQCSECGTMLQRLRMLSKELENLPKIMPPF SIVDSILPQLERLDEEKSNRREEAAGLSRAVGRSPRSPEQLPWTRRIAAHVSWKTVSGVV AAGFVLGFFAFNMDRPAQSGPAGMFSALTGAKTENADTAAKSVQPTAVPDVSGSGKQSGG TPTAPPASQTPGDSKSAGKPQTDSNGEGNQTDRTASTGDTDKGSGAGQQKSDADSPKEEG SRKEQPGTTSTPQPDKQPNASANEGKVAGGTDNPPADHGVSPSPGDTSGGTSGSGDGQTG GKIATTDPDKKDAHTFTAAGTGGTSPDGKLSAKIEERKLTIVKTDGTSVYVSAKQWKETD TLRLVGWNGNDEFVYEVSSGNTKQEYVVSLKTKQERAK >gi|333604779|gb|AFDH01000106.1| GENE 44 55384 - 55932 425 182 aa, chain - ## HITS:1 COG:BH0263 KEGG:ns NR:ns ## COG: BH0263 COG1595 # Protein_GI_number: 15612826 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog # Organism: Bacillus halodurans # 6 169 8 181 187 109 35.0 3e-24 MVAPEMVKAAQSGDREALVTLLRQIETHVYRTAYYLLGNEQDALDASQEALIRIYTKIQS YEEKALFKTWVQRIVTNICIDKFRKTKPTVSIEEHELTFTTPKDVEDEVMIGYLAQDIQE AIEKLPEHHRSVVVLRYLQDFSYHEIADCLGLPLNTVKSYLFRARQQLQGLLHEYQKGGV RG >gi|333604779|gb|AFDH01000106.1| GENE 45 56241 - 59030 1977 929 aa, chain - ## HITS:1 COG:BS_comEC_2 KEGG:ns NR:ns ## COG: BS_comEC_2 COG2333 # Protein_GI_number: 16079611 # Func_class: R General function prediction only # Function: Predicted hydrolase (metallo-beta-lactamase superfamily) # Organism: Bacillus subtilis # 564 920 27 296 307 162 29.0 3e-39 MWVIGYGAAIYASKPWMTAWSGAAFAAAAAGVMALRLPKRRWTAAVLVAAAACCYYADTD RRNSTALPAAAAVASQGSQVSVAGTLASPVAVDGDRASFELRVSQLGESGSEADAAAGAP PEERVQVSLRLLSPAEQSAAAAWRRGDRLAMRGELQEPAAARNFGGFDYRRYLRQQGKHW LLVVKGAQQVQHGPPASITAALTSPRLAAERLLRTTDALRGYLGGRIDGIFTPGQAGFMK SMLIGLTDDMDPDRYAQFSNLGLTHILAISGLNVAVFLGVLIWVLKRLGLPKETYLLVAV FLLPLYILLTGASPSIVRAGLMTMIGLLAVRKNRIKDILQIACLVGLGLLIWNPYYLLDV SFQLSFLVTLGLIVGVPRVTALLPLKNAVLRNTAAITLVSQLVSFPVSIYYFNQFSLLSW LANAALVPVFSLLIFPAGLIATCLGLVYVPLGRLGAWVTESGTGFVFRIVEWLDQWEGFR TIWPSPSVFWIAVYYLLLAGICGGLERLVRNRRVQNEAGTPQLDVLAPGRSMFSRYRTSS AAVIVLGLGWFGLLYYGYTPDRWNSEACVDMIDVGQGDSILIRTPERKYILVDGGGTVSF RKPGEEWKLRADPYEVGRKTLVPLLKKRGVHKLDAVILTHEDADHSGGLQAVLEDIPVET FIFNGTYKSGPQVEKLFRTVVDKKIPLISAAYGKTLRMDNRTRLDFLAPLPENGQIPAGK DSHPAASGSGQLAFPAQRTAGKTGAEPAPSAAQDIYGSTDNPIVLENEQNGVSVVFLLEM EGTRWLFTGDMDVKAERRVMELLQSRNSTNEAHGTKLPQSDNGAKEADGTENGTPATPGI DVLKVAHHGSKTSTGSDWIGYWKPRTALISAGVKNMYRHPSPDVVARLERNDIRVLRTDL LGEIQLLVRSGKIYVRSVLPGKPAVSGDS >gi|333604779|gb|AFDH01000106.1| GENE 46 59141 - 59269 86 42 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSGGTKGYGARPAQEGCVYLVREGSAGDYTVSLSKQERSEMD >gi|333604779|gb|AFDH01000106.1| GENE 47 59396 - 59875 451 159 aa, chain - ## HITS:1 COG:SPBC2G2.13c KEGG:ns NR:ns ## COG: SPBC2G2.13c COG2131 # Protein_GI_number: 19113234 # Func_class: F Nucleotide transport and metabolism # Function: Deoxycytidylate deaminase # Organism: Schizosaccharomyces pombe # 1 153 205 346 348 97 37.0 7e-21 MDIAYMASTRSQCSRRHVGAVLVQGKKLLGTAYNGAPMGVPDCSEEGCMLVEEYELHVAD GKEEMIRKQRCIRTIHAEQNLLLFTDREDREGSSVYVTDQPCWTCSNMLANSGVREIVFH RPYPKDSDKVNALMAARGIAFRQIQGYEPPEGTDHRIVN >gi|333604779|gb|AFDH01000106.1| GENE 48 59917 - 61209 1314 430 aa, chain - ## HITS:1 COG:BH2603 KEGG:ns NR:ns ## COG: BH2603 COG2873 # Protein_GI_number: 15615166 # Func_class: E Amino acid transport and metabolism # Function: O-acetylhomoserine sulfhydrylase # Organism: Bacillus halodurans # 1 429 1 429 430 670 79.0 0 MSEQRPYSLETLAVHAGQQIDPTTLSRAVPIYQTTSYGFRDADHAADLFALKEFGNIYTR IMNPTSDVFEQRIAALEGGAGALATASGQAAITYSILNIAGAGDEIVSASSLYGGTYNLF STTLAKLGIQVKFVDPSDPENFRKAITDKTKALYAETVGNPRGDLLDVEAVAAIAHENGI PLIVDNTFPTPYLLRPIEHGADIVVHSATKFIGGHGTSIGGVIVDGGKFDWKASNKFPGL TEPDPSYHGVVYADAVGPIAYIIKARVQLLRDMGASISPFNSFLLLQGLETLHLRMERHS SNALAVARFLEAHEAVDWVSYAGLESHSSYKLAQKYLPKGQGAILTFGIKGGLEAGRKVI EQVKLFSHLANVGDSKSLIIHPASTTHQQLSEEEQLSAGVTPGMIRLSIGTEAIDDILHD LEQAILASQQ >gi|333604779|gb|AFDH01000106.1| GENE 49 61350 - 62000 393 216 aa, chain - ## HITS:1 COG:TM1052 KEGG:ns NR:ns ## COG: TM1052 COG1555 # Protein_GI_number: 15643810 # Func_class: L Replication, recombination and repair # Function: DNA uptake protein and related DNA-binding proteins # Organism: Thermotoga maritima # 153 209 120 176 181 65 52.0 5e-11 MNWNFQSWKSRGVLAGSAAVIAAGLGVWLLVSPRGTVPQGFTALNASMAQTIEGTKPVSP SEKPSSPSSSAKTEAKEEVGAGSKQAGAEDSAAGATGGGSEQAPASSRKGAAADDNPAQA DQQRNVAGGNEAVPGKKESGGPAADKKIPPGPKIDINTANLQQLMELPGIGESKGKAILA YREQHGKFKRAEQLLDIKGIGEKMLAKMKPYLQINP >gi|333604779|gb|AFDH01000106.1| GENE 50 62245 - 63075 595 276 aa, chain + ## HITS:1 COG:BH1331 KEGG:ns NR:ns ## COG: BH1331 COG0345 # Protein_GI_number: 15613894 # Func_class: E Amino acid transport and metabolism # Function: Pyrroline-5-carboxylate reductase # Organism: Bacillus halodurans # 1 274 1 274 275 249 48.0 4e-66 MKAGFIGTGSMGSILIEALIHSGALNPEQICAANRTPGKVQRLAETYAGLTAASSNAEAA AGRDVVFLCVKPLDYKRVIDEIRPVLEPAQIVVSITSPVLLKHLEDQLPCKVTKIIPSIT NYVLSGSTLCIHGERMYPEDKEWIENLLTHISTPVRVSEAYTRISSDLSSCAPAFLAFFL QKYIEAAVAETGISPEEATILASEMTLGTGKLLTTGGFDPVSLQKRVRVPGGITAEGLRL MEQDLDGMFNRLIGITHAKYEEDLEKLEMVFTTKKQ >gi|333604779|gb|AFDH01000106.1| GENE 51 63385 - 65832 2721 815 aa, chain - ## HITS:1 COG:BH3281 KEGG:ns NR:ns ## COG: BH3281 COG0495 # Protein_GI_number: 15615843 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Leucyl-tRNA synthetase # Organism: Bacillus halodurans # 15 813 8 804 806 1210 73.0 0 MAHEKEQQGYNPQVIEPKWQKYWDDNQTFRTSDEAGKPKFYALDMFPYPSGAGLHVGHPE GYTATDIVSRFKRMRGFNVLHPMGWDAFGLPAEQYALDTGNDPREFTKQNIENFRRQIKS LGFSYDWEREISTTDPEYYKWTQWIFIQLYKKGLAYVDEVPVNWCPALGTVLANEEVIDG KSERGSHPVIRKPMRQWVLRITEYAERLLEDLEELDWSESIKDMQRNWIGKSKGAEVTFA IDGHEGDSLTVFTTRPDTLFGATYCVLAPEHELVAKITASGQDADVKAYQEKAARKSDLE RTDLAKEKSGVFTGAYAVNPVNGAKLPIWIADYVLAGYGTGAIMAVPGHDERDWEFAKQY DLPIIEVVQGGNVQEAAYDGEGPHVNSGFIDGMGKEEAIASMIAWLEENGKGKGKVTYRL RDWLFSRQRYWGEPIPILHLEDGTMKTVPEDQLPLLLPQVEHIKPSGTGESPLANVEDWV NTVDPETGMKARRETNTMPQWAGSCWYYLRFIDPRNNDAICSPEKQKEWLPVDLYIGGAE HAVLHLLYARFWHKVLYDLGVVQTKEPFHKLVNQGMILGENMEKMSKSRGNVVNPDDIVN EFGADTLRMYEMFMGPLEATKPWNTNGVEGSYRFLNRVWRLFVDENGALSGKISEDENAG GVAFKRTWHRTVKKITEDFEALRFNTAISQLMIFVNEAYKTEALPKTAVKHFVQLLSPLA PHIAEELWQKLGGTGSITYEAWPVYEEAWTVDDEVEIVVQVNGKIADRVKVAKDLDEAGM QELALGLDKVKELSAGKTVRKIIAVKGKLVNIVVG >gi|333604779|gb|AFDH01000106.1| GENE 52 66258 - 67046 802 262 aa, chain - ## HITS:1 COG:BS_yqeM KEGG:ns NR:ns ## COG: BS_yqeM COG0500 # Protein_GI_number: 16079615 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Bacillus subtilis # 1 259 1 241 247 148 35.0 9e-36 MSYRDFAYTYDRLMEDMPYEAWISYARQAWEAYGLRPETVVDLGCGTGNIAVPLAKLGCK VVGIDLSDDMLAVARHKAEEEAGSGTKPDILWLQQDMRDWELPEPADTVISFCDCFNYLL EEEEIIEALEQAYRGLRGGGVLLFDVHSPAQFEEYASLQPFVFDEEDVAYLWTCELDEER TEIEHALTIFVREDASSARGGEPLFRRIEETHRQRAYEPRWLKERLEAAGFADIRISADF DWDAEFSPDSRRLFYAARKPLA >gi|333604779|gb|AFDH01000106.1| GENE 53 67048 - 67932 557 294 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|212640476|ref|YP_002316996.1| Uncharacterized protein conserved in bacteria containing two ribosomal protein S1-like RNA-binding domains [Anoxybacillus flavithermus WK1] # 6 294 3 284 285 219 38 5e-56 MSLEAGTLVTLDVTREVSPYGYFVTDGEREVLLPYAETNRKLKAGQQAEVFIYYDSEDRM AATMNRPMLLLGELALLEVVDLHPRFGAFLEMGIGRNLLLPFKEMPELHELRPQVGDKVF VTMDHDRQGRLVARLAGEDILTEKCFPAPQAWRNQWLDARVYKPLQMGTFVVCDGGVVGF GVIGLIPSTERSRLLRVGEEVSVRVTYIREDGRVNLSMRQPKEKGRDEDAERVLAVLRER PGGAMPYSDQTEADLIKSKFGISKSAFKRALGKLMKDGLVYQEENWTYLKQEEN >gi|333604779|gb|AFDH01000106.1| GENE 54 67929 - 68276 553 115 aa, chain - ## HITS:1 COG:BH1328 KEGG:ns NR:ns ## COG: BH1328 COG0799 # Protein_GI_number: 15613891 # Func_class: S Function unknown # Function: Uncharacterized homolog of plant Iojap protein # Organism: Bacillus halodurans # 6 113 4 111 117 139 61.0 2e-33 MTVNPEQLMNLVVDAAEDKKAINVVALDLQEISLVADYFVICNGNSETQVQAIATEIRKK ADQHGVTVRGLEGYDTARWVLVDLGDVVVHVFHRDDREYYNIERLWSDARVVERV >gi|333604779|gb|AFDH01000106.1| GENE 55 68410 - 68976 468 188 aa, chain - ## HITS:1 COG:BS_yqeK KEGG:ns NR:ns ## COG: BS_yqeK COG1713 # Protein_GI_number: 16079617 # Func_class: H Coenzyme transport and metabolism # Function: Predicted HD superfamily hydrolase involved in NAD metabolism # Organism: Bacillus subtilis # 1 183 1 183 186 187 49.0 1e-47 MNREEMMKTVKEEMPEKRWRHTLGVMETAVILARRFGADEEKADRAAILHDVCKYWPVEK QAGAIRESGFQTDVLSFDKELWHAHAGAWIASARFGVKDEDVLNAIRYHTSGRENMSTLE KVVCLADYMEPGRDFPGVDKIRELAETSLERALLAGFDSTLSFLLQKGRRIYPLTVLTRN RLILELDV >gi|333604779|gb|AFDH01000106.1| GENE 56 68966 - 69553 508 195 aa, chain - ## HITS:1 COG:BS_yqeJ KEGG:ns NR:ns ## COG: BS_yqeJ COG1057 # Protein_GI_number: 16079618 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinic acid mononucleotide adenylyltransferase # Organism: Bacillus subtilis # 2 195 3 189 189 167 43.0 1e-41 MRIGIMGGTFDPVHTGHLVAGECARTACGLDEVWFMPANVPPHKPNAPKASAQQRWEMVC RAVSDNPAFRPFDHELRKGGVSYSVDTIRELKDRYPEHEFHYIIGADMVEYLPKWREIGE IMKMIGFIGLQRPGFELQPDALPAFIRQGVRLAPMPLLDISSTDIRTRRREGRTVRYLVT APVHDYIEGMGLYES >gi|333604779|gb|AFDH01000106.1| GENE 57 69675 - 69971 354 98 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|212638657|ref|YP_002315177.1| Predicted RNA-binding protein containing KH domain, possibly ribosomal protein [Anoxybacillus flavithermus WK1] # 1 97 1 97 97 140 71 2e-32 MLTGKQKRHLRSLAHHLTPVFQVGKGGVNEHLIQHIVEAIEVRELMKISVLNNYEADCKE VARELAEGAGAELVQVIGRTIVLYKESRDNKQIELPKS >gi|333604779|gb|AFDH01000106.1| GENE 58 69986 - 70855 1032 289 aa, chain - ## HITS:1 COG:MK0117 KEGG:ns NR:ns ## COG: MK0117 COG0169 # Protein_GI_number: 20093557 # Func_class: E Amino acid transport and metabolism # Function: Shikimate 5-dehydrogenase # Organism: Methanopyrus kandleri AV19 # 6 282 6 285 290 253 49.0 2e-67 MGNKPSLDSGTILYGVFGDPVRHSRSPIMMNRAFGEAGINGAYAAFHVLPEQLEEAVAGI RALGFGGVNVTIPHKVNVMKYLDEIDADAQALGAVNTVVNRGGKLIGYNTDGIGYVRSLK EETGMDLRGKKVLLIGAGGAARGISYALAKEGPSFIAIANRTAEKAQELASTVRAETSAV GMGLHELGNIISDADLIINSTSSGMYPNIEEMPLDLDGHRLREGAVVSDLVYNPLETRFL KEAKARGAVTHGGLGMFIYQGAYAFEYWTGVPAPAAAMRQAVEQSFIGN >gi|333604779|gb|AFDH01000106.1| GENE 59 70940 - 72055 1201 371 aa, chain - ## HITS:1 COG:BS_yqeH KEGG:ns NR:ns ## COG: BS_yqeH COG1161 # Protein_GI_number: 16079621 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Bacillus subtilis # 5 371 2 366 366 403 53.0 1e-112 MTQEEVIHCGGCGVKLQLEDPHALGYTPAQALEKEPVICQRCFRIKNYNEASSITLNQDD FLKLLGHVGHKEALVINIVDIFDFEGSLISGLARFVGGNPIILVVNKIDLLPKVTNWNRI VNWVRKQAKEQGLKVVEVVLCSAKKNMGFDRVLQAVDEHRNGKDVYVVGATNVGKSTLIN RLISDYSDLDSELTTSQYPGTTLDMVEIPLDDGHFIIDTPGIVYKHRLTELVSKKDLGKL MPGKPLKPMVYQLNEGQTLFFGSLARFDFVRGERQSFTIYSSGAIPIHRTKLEKADELYA NHKGTLLTPPVVKDLEELPPLVKQTIHISKGKKLDVLISGLGWIKINSEAGAELAVHVPK GVKIVQRDSLI >gi|333604779|gb|AFDH01000106.1| GENE 60 72142 - 72642 579 166 aa, chain - ## HITS:1 COG:BH1322 KEGG:ns NR:ns ## COG: BH1322 COG2179 # Protein_GI_number: 15613885 # Func_class: R General function prediction only # Function: Predicted hydrolase of the HAD superfamily # Organism: Bacillus halodurans # 1 164 1 163 171 169 51.0 3e-42 MFKKLVPKQFVQTIYDINLEELWQSGIRGIITDLDNTLVGAKVADATPELVNWLGHVKQL GFKVVIVSNNQETRVSTFALPLSIPFIHAARKPTNTAFRKALALMDTTAEQTVVIGDQML TDVLGGNRLGLYTILVAPISIHDEGFFTRINRRIEKLANNYISKNK >gi|333604779|gb|AFDH01000106.1| GENE 61 72908 - 75175 2340 755 aa, chain - ## HITS:1 COG:lin0469 KEGG:ns NR:ns ## COG: lin0469 COG1305 # Protein_GI_number: 16799545 # Func_class: E Amino acid transport and metabolism # Function: Transglutaminase-like enzymes, putative cysteine proteases # Organism: Listeria innocua # 18 628 2 567 721 221 29.0 3e-57 MRSIWNVFRFMAGEDGTKKWMALFVLLFLFQFTGWISREDGLWLPETLKAVNWTLITVCA TFFIPRIHHLVRELLQIVLVLVVHAVVLQYRFVPLSQMDGPMEWFQANVSQLFPYLWFGL AAWWVFLMAMWASRSKLWISFIVILAILFFGVRDSFSTLQLWPQVAAVIFSGLCMLVVRH LSQLKNKAPESWKRLSDNPGPLIVPVVLIIALTLTLGALVPAVDPVLTDPYTAWRQYNGE AVTFLPSSDDSGRTMVQDPNDPLLKSSGYSRNDAQLGGQFQYDYTPVFTVDTTSRTYYRG ETRALYTGSGWEASPADRRARQSSVDSGGKLPADTGIDTSKLKTEEVKQTVKMRSNEVYP VLFGAYPMSKVDIQEEGPDGTRSDPAQLGSLRWSARQAELRFNAKSNYPKQYELVSNIPL LDLSGLKKVDMSRLNRSEWNDYLQLPDRLPERVTELAKEVTKEAPTAYEKVHELELYLSS KYPYTNTPDVSKGKSKDFVDRFLFEIQEGYCDYYSSAMVVMTRSLGIPARWVKGYASGSS DNSRPAGIGNLRGGMSDPDAEGTYTVRNSDAHSWVEVYFEGYGWLPFEPTAGFSLPQSYA PETSTATEMPTPAPAEAKTSQAQSGAAPWVRYVLYTLSGLVLLTAVVVTAIRLSSGKKLL PPFGRDPKAVNYAQGVIQEVNRLLRYGRRKGYERFEHETFREAASRWMTQSYWLSGELSP VLAMFEKAKYSRSSVTEQDLEAVQGHVKRLREQMK >gi|333604779|gb|AFDH01000106.1| GENE 62 75168 - 76415 1058 415 aa, chain - ## HITS:1 COG:BH0605 KEGG:ns NR:ns ## COG: BH0605 COG1721 # Protein_GI_number: 15613168 # Func_class: R General function prediction only # Function: Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) # Organism: Bacillus halodurans # 25 277 25 270 385 91 26.0 4e-18 MKLFKPTAAQKGRQATLILSFLFFASLMFLLFQGGKLASTLFAVVCLLSAYLVLGKWSGI RQTQAVREISAADGTGKVQAGQSLQIKLKIQVPGVWPIPYLLIEDELVRSSGEKTVMKGS VVLNWMRKGEFVYKTPPLRRGHYSLERAEFATEDVFGLYEHKGSVHLPYGFVVMPQMIEI RHWAQFSQSPRGARHHSVTARMQRETTQINGVREYIHGDRLSRVHWNATARTGTWKSKEF ERETLPKMVLVLDRSKQNYGSPAEFELAVSIAASLLHFGTQRNIAVGLVSSGRESLMAVP KTGARHEDVLMDHLVEVEPDGLRPLQQVVNNADGMFSPGALVVYITPAKNSDLLSLLHWT DKQRMLACHLCVCGAKGGSTDVWVRRLHSLGFMGYGVHALTELPAVLGGGMKIYA >gi|333604779|gb|AFDH01000106.1| GENE 63 76412 - 77377 902 321 aa, chain - ## HITS:1 COG:BH0604 KEGG:ns NR:ns ## COG: BH0604 COG0714 # Protein_GI_number: 15613167 # Func_class: R General function prediction only # Function: MoxR-like ATPases # Organism: Bacillus halodurans # 9 315 5 311 318 334 51.0 2e-91 MAAVSQPHMSEISRIRSNLDSCILGKSEEIMLLLTALLAGGHVLLEDVPGTGKTVLVKSL ARSIQGQFRRIQCNPDLLPTDITGVSIYHPKNEAFFFRPGPVMANILLVDEINRATTKTQ SALLEAMEEHHVTVDGEMYPLPRPFMLLATQNPIDFEGTYLLPEAQLDRFMIKFSLGYPD SATELQMIASQSKEHPMEQLHEVVGAEQILSMQEEVRSVYLDEGIAKYLVDITRSTREHP AVELGASPRATLALVQASKAYAYLNGRDYVLPDDVKYLAPYVLGHRIILSSEARMEGETS RSVFASILAHTKVPVRLEKAK >gi|333604779|gb|AFDH01000106.1| GENE 64 77673 - 78023 518 116 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_1704 NR:ns ## KEGG: GYMC10_1704 # Name: not_defined # Def: stage V sporulation protein AE # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 116 1 116 116 164 81.0 1e-39 MQFLWAFLVGGAICVIGQLLLDLGKLTPAHTMTTLVVAGAILDGFGLYEPLVRFAGAGAS VPITSFGNALVHGAIKEIQSSGWIGIVTGIFKVTSAGISAAIIFSFLAALFVRPKG >gi|333604779|gb|AFDH01000106.1| GENE 65 78026 - 79045 943 339 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_4029 NR:ns ## KEGG: Pjdr2_4029 # Name: not_defined # Def: stage V sporulation protein AD # Organism: Paenibacillus # Pathway: not_defined # 2 333 1 332 337 493 71.0 1e-138 MIIRKGQSWEFRKPPVLISTATVVGPDEGEGPLANDFDLIHQDNTLKQKSWEKAEKALME DAANLAIKKAGLQKDQIQFYVGGDLMNQIISSSFAARTLAIPYLGVFGACSTSMESLAVS SLIVASGGGDYVLSGTCSHNCTVEKQFRYPTEYGSQKPPTAQYTVTGAGASVVAQKGTGP VVTSATIGKVIDMGITDPFNMGAAMAPAAADTITAHFRDMKRSPDYYDLIVTGDLATVGF QIVNELLKEQRIAMNSTTFNDCGLMIYDIRKQGVQAGGSGCGCSAVVTYGHLLKRMEQGD IRRLLVVATGALLSPLSFQQGESIPCIAHAVAIERQEGL >gi|333604779|gb|AFDH01000106.1| GENE 66 79042 - 79365 414 107 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_1702 NR:ns ## KEGG: GYMC10_1702 # Name: not_defined # Def: stage V sporulation protein AC # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 2 103 57 158 162 135 73.0 4e-31 MLFEKVFGFSKEAASNPTVSVLILISVILTCLGVYDKIAQWAGAGTAVPVTGFANSMCSA AIEHRSEGLILGTASNMFKLAGSVIVFGVVAAFFVGIFSLIFGGGAH >gi|333604779|gb|AFDH01000106.1| GENE 67 79535 - 80410 810 291 aa, chain - ## HITS:1 COG:BH1970 KEGG:ns NR:ns ## COG: BH1970 COG2323 # Protein_GI_number: 15614533 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Bacillus halodurans # 1 290 1 292 292 175 35.0 7e-44 MEGIGVIVLRSLGAIAMLFAITRILGKKQISQLSFFEYVTGITLGELAGFLSTDIEAHYL HGIAALAVWFVVPFLLELTTLKSKWLRHFFEGKGTVVIRNGRVLEHHLKKERYTADELME QLRTKSIFQVADVEFAMLEASGDLSVLLKKEKQPLTPGDLGLKMGPDKLPHTVIVDGVVD DDELSASSLTREWLNKQLAKINATADNVFLAQIGDQNKLYVDLYDDTRGISLEKPQVELI STLRQCTADLDTFANSATDLNARIKYEQTASALRGVLKQLSGGGKSTNGTE >gi|333604779|gb|AFDH01000106.1| GENE 68 80554 - 80655 69 33 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFEISLEGETAVNLNMLIVLVLFILLVAILFLF >gi|333604779|gb|AFDH01000106.1| GENE 69 80828 - 86539 5182 1903 aa, chain + ## HITS:1 COG:lin2282 KEGG:ns NR:ns ## COG: lin2282 COG4932 # Protein_GI_number: 16801346 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted outer membrane protein # Organism: Listeria innocua # 1112 1739 993 1673 1806 82 24.0 6e-15 MSFPSDSQFFPVTLNGVPVGDPVADVSPASTDIVGNAQFPAAYVSYDTIYVYFRLRLNGD PRAKTGFDNFAWGVLFNTDNNPATYEWVLAVNGQNASIDLIENKIKVPNTFNDPAEGIDG KGTPAYTRPIINFDLARVKPTGDGSRFGGNENYFLDFFIPASVLFGALGITSQTPLQFIF FSSANNNNFNKDFLIPAGSTFTSGFSDPVAPQGFNAQARLVLTKTLTSSPGAAVLTGQVA SYTGTLAISNQGKSQANAVLITDALGLDTVSSLTVSGVTQGLSTVNLLGSTISWNAGNLA PGQTVTLTFTVQGAFLTAGDGSRILNTAAGTGFDSLTGQVITAGPATNSIAVVTAGGVTG TVYNGMTALPLAGAALQLTNAQNQVPVNQTSGTGGAYGFSNLVPGTYNLTVSFAGFVAQT VSVTVNAGTVTPLDITLRPQPASLSGTVADQAGNALPGAVIRVKSPFGAIVAETTADAAG QYQLSVPAGTYTVIATANGFQSEVRTLQLQPAQSVSASFNLAALPGTVNGVITVSGTGTP LAGALVEALNERGQQIAAAVSAADGSYAINSLAPGNYRIRASEAAFTTDIAGAAVRAGQT ATVNIGLSPAPGTLTGQVTDALSGVPLSGAVVRVVTVEGITAATTVTDAGGTYVINSLQP TNYTVTFSETAYASQTTGVSIAPGAQSVLNIALQQLAGSITGMVTDLNGNPLENAVVRVF MNSFVVATLNADQNGRFDIHGLAPGSYTVRAETPGYQRQLIGAFIQPGEIVEVDFALAPQ PGTLTGTVTAGTSPVSGAVLVVRQTDNSVIGRTITSADGTYVLEELAPGTYTAAVFADGL QTQIKGFSITAGQTTTVSFNLEPLPGIVAGTVYNASTNQLLADIPVAVRIVDTNGLVIQS LFTDQFGAFTAPNLAPGSYTTIVSSTDFQTNLVSFLIAAGQTTTIRVSLIPSPGQISGTV TAAGTDTGISGASVRISNYTGTLITTALTDSSGYFRAEGLAPDTYIVTASQTGFQQGSIG AIVSSGQTTTTGLSLLPFPGSVSGAVSPAVDGTVIQIYDRNNLLINEELVTAGNGTFRFD SLAPGAYIVTATPPGYALAKAGTVVEAGRESSVSLTLSPLLSVLTGRITDTAGSPLDTAV IRILDGNETLLGTGHADANGAYVVDNIPAGNHFLVAAAPGFSTVVLGVATLPGVDLTGID IRLVPDSGSVSGQITNASDGSPLPSATVLIRSADVSNLLIATATSSLFGNFFVSGLSPGA YTVVAEAEGFAAGTAGAIVVSDQETAASLALRPLSGVVTGSITDRSGAILTGSEIQIKIF NEAGILLFAYLADADGRFTTPELAPGNYVLTASAPGFASASVLAAVTAGSTGTVTLVLTQ QNSLLTGNVINRNGSAPVPGSIVTLLNAAGQTVDQSVSDLSGNFTIDNVTAGAYTLSVTC DGFGSTSLGVVLRPGQTTAVTVPLEPSPGSVSGFVIDRVTSAPLAGADVRIEDAAGVPVN TVQTDSSGFYLFNNLSSGDYKVTAEAAGFGSQNGGAPVAPGRNTDYSFALIPLPASLSGT VSSAAGARPLAGVLVEVRQLNTYGTVLTDTTTDAAGRYTLGGLPPGNYTAVFSLSGFGQQ TDAFYAAPGQNTVVDARLSPTSNDLNGTVVTPPTVPVFPPPPVVDVYDDRNTPVVTVPTD PSGQFTADGIAAGDYTVVVQKPGLSYSQQVVTVVPGFAPNVVLSPGSPSLAVTGAVLDES TGNPVPGASVQILNENLTPVDRTLADGTGVFLLGSLRPGSYTVTVSSELFGSKSAAVSLA AGTPAPPVNVALNPLFGTLTGTVTDRNGRLLSNVFVQLFDPSGLFLRSVTTSTRGVYTVT NLAPGFYSARFTLEDKQPAVRTLIIAANETTVLNVVLEDDTEE Prediction of potential genes in microbial genomes Time: Sun Jul 17 10:03:44 2011 Seq name: gi|333604764|gb|AFDH01000107.1| Paenibacillus sp. HGF7 contig00089, whole genome shotgun sequence Length of sequence - 13626 bp Number of predicted genes - 17, with homology - 8 Number of transcription units - 11, operones - 3 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 671 177 ## - Prom 703 - 762 5.7 2 2 Tu 1 . - CDS 840 - 1073 93 ## - Prom 1099 - 1158 4.1 - Term 1108 - 1164 5.6 3 3 Tu 1 . - CDS 1191 - 2054 86 ## PTH_2167 putative transcriptional regulator - Prom 2251 - 2310 4.5 + Prom 2029 - 2088 2.3 4 4 Tu 1 . + CDS 2242 - 2346 67 ## + Term 2371 - 2425 1.8 - Term 2919 - 2966 4.3 5 5 Op 1 . - CDS 2974 - 3162 153 ## 6 5 Op 2 . - CDS 3191 - 3460 133 ## 7 5 Op 3 . - CDS 3468 - 4100 332 ## PPSC2_c3484 protein kinase 8 6 Tu 1 . - CDS 4203 - 4466 163 ## - Prom 4547 - 4606 3.7 - Term 4507 - 4554 -0.8 9 7 Tu 1 . - CDS 4708 - 5052 300 ## - Prom 5136 - 5195 3.0 - Term 5176 - 5218 10.8 10 8 Op 1 4/0.000 - CDS 5245 - 6063 949 ## COG1806 Uncharacterized protein conserved in bacteria 11 8 Op 2 1/0.000 - CDS 6084 - 6695 638 ## COG0517 FOG: CBS domain 12 8 Op 3 . - CDS 6786 - 9476 2815 ## COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase 13 8 Op 4 . - CDS 9445 - 9636 175 ## - Prom 9819 - 9878 7.6 + Prom 9791 - 9850 3.5 14 9 Tu 1 . + CDS 9908 - 10882 1206 ## COG1494 Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins + Term 10932 - 10977 2.5 15 10 Tu 1 . + CDS 11386 - 11487 91 ## + Term 11531 - 11563 -0.2 - Term 11325 - 11384 24.3 16 11 Op 1 . - CDS 11471 - 12391 1102 ## PPSC2_c2190 S-layer domain protein - Prom 12446 - 12505 4.5 17 11 Op 2 . - CDS 12530 - 13528 875 ## COG0739 Membrane proteins related to metalloendopeptidases Predicted protein(s) >gi|333604764|gb|AFDH01000107.1| GENE 1 2 - 671 177 223 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MQTNGIYALSTPSTIVAKNNQLATKVLVPASNNASDAVEMYTPSVIDEGQQGLRALGGQW IVGREFTSVQGTDYSKNFLDDVSGFLVKSAYERDLLLQRYTGDELSQHLEQYDKQVQLKI EDIAQTTVSTLSQYLNFENDSIFGGSKETQGEFLSTYKPIFDKDELTDRIKNMLQEQSRL LGKLQEEQGDQWKQIMEQGGKGITDFRDLLKEEASKASVGEST >gi|333604764|gb|AFDH01000107.1| GENE 2 840 - 1073 93 77 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MQLNNDTARLIRANTQMNQVQFAKIVGISRALLAKIETNAKPISNSVERRIRTAFGLDDE KISQLLNNALYSVPGRN >gi|333604764|gb|AFDH01000107.1| GENE 3 1191 - 2054 86 287 aa, chain - ## HITS:1 COG:no KEGG:PTH_2167 NR:ns ## KEGG: PTH_2167 # Name: not_defined # Def: putative transcriptional regulator # Organism: P.thermopropionicum # Pathway: not_defined # 16 111 3 94 286 64 34.0 4e-09 MNTNELRNKRHDEQRIFFKVDVLAVRGGIIAKIGADGFATLATIASFMDEDGVCYPTQET LAEMMGVTRFTVIKRIRTLLETKLDDGTPVLERAWRNRTGGGVGRQSVYKVNMACGVSMG RDSKDVKSIDVKESHVSEIHVEEKHALMLKNGTNNVNNFNVSDVVAASHKEEPVFKKNQE EEPIKEERKDKLSYLSIPSENANDNNIHLPQVVEEDVEHKSFNWGEEWEKDFGDADRERR RKSERPLTAKEKADIEEIQNSRTVTYSLSDEMFEAAFGVKNNTSTSC >gi|333604764|gb|AFDH01000107.1| GENE 4 2242 - 2346 67 34 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MRVTKHITNVMQKLNVKGHSQAVVELIKLGELKI >gi|333604764|gb|AFDH01000107.1| GENE 5 2974 - 3162 153 62 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKDIIYSVLIAILITIAASYVERPVSLYFFVICLVICYGVGWIVEKVSKYISKNKKNKQF KS >gi|333604764|gb|AFDH01000107.1| GENE 6 3191 - 3460 133 89 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTYFIILILNFIVAYFIYDDSSFLKPLIHSIFLLILMAGMDLILKNKKKRKEKTIQVKAQ IRNKQRALTQTSSYSTPQKVMTEFMGWAD >gi|333604764|gb|AFDH01000107.1| GENE 7 3468 - 4100 332 210 aa, chain - ## HITS:1 COG:no KEGG:PPSC2_c3484 NR:ns ## KEGG: PPSC2_c3484 # Name: not_defined # Def: protein kinase # Organism: P.polymyxa_SC2 # Pathway: not_defined # 91 202 5 120 120 103 47.0 6e-21 MVVFTIDIRKVYVHTHRLQKDGTFKEVNQNLSIQDGDAVFRDYDLAEQWMKNNPVVYVDD EKIYNESESYSYGSPAFTIRQHRTSLPQNIFFTKEEVMNVLENGDDEVNHVLVVDYDGVV HLLPECSNLRGYAVRFETFIAGKGYVGSTGNLRHLDVTYRALLDAWVEHLHHGDEAYRDY DIGKITVEELQKEAEALVAKMRTLGSENES >gi|333604764|gb|AFDH01000107.1| GENE 8 4203 - 4466 163 87 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNINNYEKELRKYLIETKKYADEEILSIKGKHSKTPAYPVYVKFKDEPDITYVYSHNGEK WNQLEGARDQYGNLPKYKHDENPSLIK >gi|333604764|gb|AFDH01000107.1| GENE 9 4708 - 5052 300 114 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MPSVRIKKSSVIIGTAILLLALSPFAYSRYTLYKLERGILAYLTETKHYQEEEILSIEAK ISKMPKYPIYVKFTDEPDVTYLYIYRDDKYIQAPPGLDSNWHLILRKHTDKETL >gi|333604764|gb|AFDH01000107.1| GENE 10 5245 - 6063 949 272 aa, chain - ## HITS:1 COG:BH1373 KEGG:ns NR:ns ## COG: BH1373 COG1806 # Protein_GI_number: 15613936 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 12 271 10 269 270 247 49.0 2e-65 MVQDAHEAQQTITICSDSVGETAETVVRATIRQFNGHNVKMRRIGHIKHEDEIREIMEEV HREGGFVAYTLVQPELREMMKEEAIRLGVRAIDIMGPMMQAYIDTFDGAPSRKPGLMHEL DDAYFRRVEAIEFAVKCDDGRDTTSMMKADIVLIGVSRTSKTPLSIFLAHKGYKVANFPL VPEVKLPKELFEFPGSRIVALTMNAEKLFKIRIERLKTLGLPFGSQYATMNRINEELEHA SSIAKRLRCPVIDVTDKAIEETAGLIIEFLQA >gi|333604764|gb|AFDH01000107.1| GENE 11 6084 - 6695 638 203 aa, chain - ## HITS:1 COG:BH1372 KEGG:ns NR:ns ## COG: BH1372 COG0517 # Protein_GI_number: 15613935 # Func_class: R General function prediction only # Function: FOG: CBS domain # Organism: Bacillus halodurans # 3 198 13 207 214 152 41.0 4e-37 MEILEFIHKQAPITGEQIAEQLGVSRPTIRSDLSLLVMLGHINAKPKVGYFPNQSFREEQ AGGLKLKVKQVQSMPVIVRKTATVGDAVVALFVDNVGGLVVADEEGMLLGVISPKDLLKV TLGNPAAASMPVSLVMTRKPQLVTVTPDDDVIEAARKMAENQVDMLPVVVPHENGSDTPS LEVVGRISKTTMTKVLLDAARKW >gi|333604764|gb|AFDH01000107.1| GENE 12 6786 - 9476 2815 896 aa, chain - ## HITS:1 COG:TM0272 KEGG:ns NR:ns ## COG: TM0272 COG0574 # Protein_GI_number: 15643042 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate synthase/pyruvate phosphate dikinase # Organism: Thermotoga maritima # 1 870 1 867 881 957 55.0 0 MSKQWLMHFYEGNQSLAGLLGGKGANLAEMTRAGLAVPPGFTLTTEACRAYYIESRLPDG LLAEVREAMAELEQRKGQRFGDAASPLLVSVRSGSVTSMPGMMDTILNLGLNDDTVEGLA AATQNPRFAYDCYRRLIQMFGSVVFGIEGAWFEKKLHALKQAAGTESDQDIRAEDWQELI GTYKALILKRAGVSFPQDVYEQLRLAVEAVFRSWNNQRAQIYRRLNGIPDEQGTAVNIQA MVFGNLNEESGTGVVFTRNPSTGERVLFGEYLTNAQGEDVVAGVRTPQPIAKLAGDMPAV YEKLVGMAELLERHYSDMQDIEFTVENGTLYMLQTRNGKRTAQAAMRIAVELVQAGILTK EEALLRVEPSHLDQLLHPSLDESEAPAALATGLPASPGAACGQAVFTADEADAWARAGKA VILVRTETTPEDIHGVLAARGVLTSRGGMTSHAAVVARGMGKPCVCGCELLAIDSEEKQA SIGGVAIREGDWLTIDGATGRVMIGEVPLKEADMSAELQLMLEWADDVRQMKVYANADNP EDAAKARSFGAEGVGLCRTEHMFLSPQRLPIVQEMILADSDAARGAALEKLLPMQQGDFD AIFRAMAGLPVTIRLLDPPLHEFLPNLEELVARHAQLTAARAGTSVPDAELQKLEFLIRK VRGLHEVNPMLGQRGCRLGILFPEIYSMQIEAIFGAALACLNDGVDVSPEIMIPLVGHAN ELRIMRGLVDEVADRMLGDLRAQVNYRVGTMIEVPRAALTAPQIVQHADFFSFGTNDLTQ MTFGYSRDDAEGKFLTHYVDSKLLPDNPFQVLDRDGVGQLIELAVTRARAAKPKLKTGVC GEHGGDPKSIRFCRETGLDYVSCSPYRVPLARIAAAQAEIEMAAEKAASGQQRIVS >gi|333604764|gb|AFDH01000107.1| GENE 13 9445 - 9636 175 63 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSKAKSDVMLGTLLCKWCNEIVGELDTEKVTLYYTQCKDGACRAAVDKEGVGHNEQAMAD AFL >gi|333604764|gb|AFDH01000107.1| GENE 14 9908 - 10882 1206 324 aa, chain + ## HITS:1 COG:BH3431 KEGG:ns NR:ns ## COG: BH3431 COG1494 # Protein_GI_number: 15615993 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins # Organism: Bacillus halodurans # 1 317 1 317 323 374 61.0 1e-103 MQRELSLEIVRVTEAAALAAARWMGRGDKNEADGAATAAMRESFRSVSMKGTVVIGEGEM DEAPMLYIGESVGSGDGPEVDIAVDPVEGTELVSKALNNALAVIAAADKGKLLHAPDMYM EKLAVGPALCGKLSLDEPLEKTLRSAARLLDKNIADLTVSILDRERHAEHIAVLRRVGVR LKLLSDGDVAGAMAPAFPESGVDLYIGSGGAPEGVLAAAALHCLGGELQGRLMPSGEEDA ARCRAMGIDDPAKLLRLPDMIGDDDVIFAATGITPGDFLGGVRFLSAERAETHSIVMRAK TRTIRYVRSIHHLPSKPVAVAVVG >gi|333604764|gb|AFDH01000107.1| GENE 15 11386 - 11487 91 33 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MPGIALSPRQLRSFTPLLPDLRDFMPRPFTSTA >gi|333604764|gb|AFDH01000107.1| GENE 16 11471 - 12391 1102 306 aa, chain - ## HITS:1 COG:no KEGG:PPSC2_c2190 NR:ns ## KEGG: PPSC2_c2190 # Name: not_defined # Def: S-layer domain protein # Organism: P.polymyxa_SC2 # Pathway: not_defined # 4 303 2 304 322 236 43.0 9e-61 MKKMTNIVLLASLLVFSLGSSAFAFSDLKGSPDEAAIQSLQEKGIVEGMDGDRFAPNTSM TAAQGVQLIVKALDLNLGKIRFVRAPKASDSFTKAKDDVWYSDSFIIAAMNSLPIGRDID PQQTLTREQFAEWLHAAVEKTGPYPVVNMFVNIADQAEVTPGSMNAIQVLLLTKIAKLDD ASKFNPKKPVTRAEAAVMAYNAMEFVAKHSKAEELATAPSEEEGVKIIVEKQSDELNKVT LSRGLQPNPGYSITIDRVDYVSDSEAVAYYTLRKPDPDKMYPAVMTEAKASVTVKAGYKV TAKPSK >gi|333604764|gb|AFDH01000107.1| GENE 17 12530 - 13528 875 332 aa, chain - ## HITS:1 COG:SA2004 KEGG:ns NR:ns ## COG: SA2004 COG0739 # Protein_GI_number: 15927783 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane proteins related to metalloendopeptidases # Organism: Staphylococcus aureus N315 # 53 332 5 282 284 177 34.0 3e-44 MKRTTTIWGMAAVLLLLPGLAGCGRTEPSSAVSPAPPAASPDAEKEAKFEPENLAALFLQ GKIKEIYSRFSPEFKKDVSLEQLSELAGGFNKDVRAYKLQSKLPLGEGDRYVWTDESGQK GLTAAIDGKGIIRGLQFVPLKTYPASDEAFSRTEFSLPFRGEWTVFWGGTNVLLNYHYEH ESQRYAYDLVQIKGTSSYTGDPGKLESYYAYNQEVIAPAPGIVKAVENGNPDNEIGKTDE NNPAGNHVVIDHGNGEYSFLAHFKKGTITVKPGDKIERGQLLGRVGNSGNTSEPHIHFHV ADGADLSASKSVRIRFEGGAAPKQGDVIKGVR Prediction of potential genes in microbial genomes Time: Sun Jul 17 10:04:58 2011 Seq name: gi|333604745|gb|AFDH01000108.1| Paenibacillus sp. HGF7 contig00087, whole genome shotgun sequence Length of sequence - 15911 bp Number of predicted genes - 17, with homology - 16 Number of transcription units - 7, operones - 5 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 1/0.000 + CDS 3 - 830 699 ## COG1994 Zn-dependent proteases + Term 845 - 874 -0.2 2 1 Op 2 4/0.000 + CDS 973 - 2136 1249 ## COG1530 Ribonucleases G and E + Term 2340 - 2380 11.1 + Prom 2472 - 2531 5.3 3 2 Op 1 14/0.000 + CDS 2654 - 2965 416 ## PROTEIN SUPPORTED gi|169187993|ref|ZP_02848150.1| ribosomal protein L21 4 2 Op 2 14/0.000 + CDS 2977 - 3324 214 ## PROTEIN SUPPORTED gi|212638539|ref|YP_002315059.1| Predicted ribosomal protein 5 2 Op 3 . + CDS 3329 - 3640 468 ## PROTEIN SUPPORTED gi|192813813|ref|ZP_03042470.1| ribosomal protein L27 + Term 3663 - 3702 5.1 + Prom 3719 - 3778 4.3 6 3 Tu 1 . + CDS 3809 - 4252 428 ## Pjdr2_4410 hypothetical protein 7 4 Op 1 . + CDS 4373 - 4582 279 ## 8 4 Op 2 . + CDS 4588 - 5895 1332 ## COG0536 Predicted GTPase + Term 5903 - 5938 3.4 - Term 5891 - 5926 3.4 9 5 Op 1 . - CDS 5980 - 7350 1233 ## COG1012 NAD-dependent aldehyde dehydrogenases 10 5 Op 2 . - CDS 7380 - 7886 379 ## Clos_2045 NUDIX hydrolase - Prom 7906 - 7965 4.2 + Prom 8166 - 8225 4.6 11 6 Op 1 . + CDS 8269 - 8742 613 ## COG4492 ACT domain-containing protein 12 6 Op 2 11/0.000 + CDS 8797 - 10086 1784 ## COG0460 Homoserine dehydrogenase 13 6 Op 3 19/0.000 + CDS 10124 - 11194 1275 ## COG0498 Threonine synthase 14 6 Op 4 . + CDS 11194 - 12156 1056 ## COG0083 Homoserine kinase 15 6 Op 5 . + CDS 12159 - 13100 913 ## COG0077 Prephenate dehydratase 16 6 Op 6 . + CDS 13110 - 13991 993 ## COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase + Term 14032 - 14074 2.1 + Prom 14130 - 14189 4.1 17 7 Tu 1 . + CDS 14295 - 15909 866 ## PPE_03648 LysM repeat protein Predicted protein(s) >gi|333604745|gb|AFDH01000108.1| GENE 1 3 - 830 699 275 aa, chain + ## HITS:1 COG:BH3015 KEGG:ns NR:ns ## COG: BH3015 COG1994 # Protein_GI_number: 15615577 # Func_class: R General function prediction only # Function: Zn-dependent proteases # Organism: Bacillus halodurans # 2 257 20 270 289 149 37.0 7e-36 MVMLLSLATGHFLESATLFGIVFLHELGHFGAAAAFGWRVREVRLLPFGGVLVVDELASV PLREEMIVALAGPLQHLWLIALGFFCRFLEAGEPEWWSYFIEINAVIALFNLLPILPLDG GKLLQGLLSLGLPYQRTLVCTVWVSIVLGLMMTVIAIWPAGTGQIHMNVLIVGLFLLYQN WVSRRHLPFYFLRFLMNREANAERLMQKGTQARPIAVARQRKVGEVVKLFMREKYHPVYV MGSRGTIEGILPEQQVVDTYLTHQNRSCTVSELLP >gi|333604745|gb|AFDH01000108.1| GENE 2 973 - 2136 1249 387 aa, chain + ## HITS:1 COG:XF1125 KEGG:ns NR:ns ## COG: XF1125 COG1530 # Protein_GI_number: 15837727 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribonucleases G and E # Organism: Xylella fastidiosa 9a5c # 2 386 3 400 497 300 43.0 4e-81 MKQLIVSCEAASLQAALLEDRKLVEYEAQHPSETQRAGSIYIGRVVNVLPGMQAAFVDIG LDKNAFLYIDDVLPVNMQKQPKTKPPIGELLQPGQRVLVQVVKEPEGSKGARVTTHYSIP GRWLVYMPGAGYTAVSRKIEADEEKVRLKQVADSLRCGEEGLILRTVSEGRSEEELRRDL LDLRELWTVVEQRAEAGAAPACIYQDLELLPRLARDVITEDVLEIWVDDEAVRAELQGLL RQRSPELAARVRLDGGDVPLFERFGIAEELSRSQRRKVWLPSGGYLVIDPTEALTVIDVN TGRFTGTSSLEQTVFRTNMEAAAEIPRLLRLRNLRGIIIVDFIDMEQSAHRDRVLECMAE AVKKDRSKTILLGWTKLGLLEITRKRK >gi|333604745|gb|AFDH01000108.1| GENE 3 2654 - 2965 416 103 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169187993|ref|ZP_02848150.1| ribosomal protein L21 [Paenibacillus sp. JDR-2] # 1 103 1 103 103 164 78 3e-40 MYAIIETGGKQYKVQQGDVLYIEKLEAGAGDVVTFDRVLVVSGDNGLQVGAPVVEGAKVS GKVEKQGKGRKIIVYKYKAKKNYRRKQGHRQPYTKVVIEKIEA >gi|333604745|gb|AFDH01000108.1| GENE 4 2977 - 3324 214 115 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|212638539|ref|YP_002315059.1| Predicted ribosomal protein [Anoxybacillus flavithermus WK1] # 1 109 1 108 111 87 45 7e-17 MIHVTVSRRSEQDPTIEAYQVEGHAEFDVPGKDLVCAAVSAITVGTVNSIEALTGVVPGT EMEKGWLDVILPLDSEPAQMAQVQLIIESMIVMLHTIASSYSDYIAIHTAYNEGG >gi|333604745|gb|AFDH01000108.1| GENE 5 3329 - 3640 468 103 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|192813813|ref|ZP_03042470.1| ribosomal protein L27 [Geobacillus sp. Y412MC10] # 1 103 1 103 103 184 89 3e-46 MLKLDLQLFASKKGVGSTKNGRDSIAKRLGVKRADGQTVTAGSILVRQRGTKIHPGNNVG IGSDDTLFAKVEGVVKFERWGRERKKVSVYPVETAPVAATVEA >gi|333604745|gb|AFDH01000108.1| GENE 6 3809 - 4252 428 147 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_4410 NR:ns ## KEGG: Pjdr2_4410 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 42 147 42 145 245 76 41.0 3e-13 MGNRLWIPAALLGLLGLIMLAAAPLTAELRLAAGAVTAASFAAVLYIRHRMKLKEAEEER ARIQQLAQQEMLLTINHLRHDWMNDIQVLLGYIQLKKYDHLHGVVAGVMGKLQHESFMAK LGDPGLIVFLLTAKAGGRHMKLEVELD >gi|333604745|gb|AFDH01000108.1| GENE 7 4373 - 4582 279 69 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MQLVPEEGSLLLDFVYQGPYNRSLLEEALSLALESGTGRTLAAVVEQNDYQEQEAALALR LPYRTSVEV >gi|333604745|gb|AFDH01000108.1| GENE 8 4588 - 5895 1332 435 aa, chain + ## HITS:1 COG:BH1213 KEGG:ns NR:ns ## COG: BH1213 COG0536 # Protein_GI_number: 15613776 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Bacillus halodurans # 1 433 1 427 427 505 64.0 1e-143 MFVDKAKIYVKGGDGGDGLVAFRREKYVPEGGPGGGDGGDGGDVIFRVDEGLRTLVDFRY QKHFKAKRGEKGRNKCQHGANADDMVVRVPPGTLVIDDDTGEVIADLTRHQQEVVVGKGG RGGRGNMRFATAKNTAPEIAENGEEGQERWVVLELKVMADVGLVGFPSVGKSTLLSVVSA ATPKIGAYHFTTITPNLGVVDLGEGRSFVMADLPGLIEGASQGVGLGHEFLRHVERTRII VHVVDMAGTEGRDPYEDWKKINEEIKLYNAKLEERPQVVVANKMDIPEAEENLAAFRKQL EEDGKSVEIFAISAVTKEGIQPLLYRVGDMLDAIPDAPLLEEVQEVEERKVYRMEKKNEY DNDFVIRRENDIFVVESPSIEKLMKRTNFTTEEGVLRFARILRNMGIDKALRERGAVDGQ TIRLNDYEFEFVEKS >gi|333604745|gb|AFDH01000108.1| GENE 9 5980 - 7350 1233 456 aa, chain - ## HITS:1 COG:BS_ywdH KEGG:ns NR:ns ## COG: BS_ywdH COG1012 # Protein_GI_number: 16080847 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Bacillus subtilis # 4 456 5 457 457 549 57.0 1e-156 MNRIHALLDKQRNFFSTGATKPLNYRTEQLRRLKAMIRDHEDAIMEALKLDLGKSDFEAF ATEIGILLEEINHVLKHLKRWSKPRRVKTPLTHIGSQSRIYAEPYGIALLISPWNYPFQL AISPLIGAMSAGNCAVLKPSELAPHTSALLARLLGQTFDEAYVAVIEGGVETSNALLAEK FDTIFFTGSVGVGRIVMEAAAKHLTPVTLELGGKSPCIVHADANIKHAAKRIVWGKTLNA GQTCIAPDYLYVHESVKDDLLKRMKEVVDAFYGDPLAEGSPYPNIINARHYNRLKSLMEA GQLVYGGRTDERSLKIEPAFIGEVGWEDPVMQEEIFGPLLPVLTYRNLEDVIREVNARPK PLALYAFSESEEIQQRIIHSISFGGGCINDTILHIATPYLPFGGVGNSGMGGYHGKASFE VFTHRKSVLKQTSRFDLPFRYPNAKNALKRLRSVYK >gi|333604745|gb|AFDH01000108.1| GENE 10 7380 - 7886 379 168 aa, chain - ## HITS:1 COG:no KEGG:Clos_2045 NR:ns ## KEGG: Clos_2045 # Name: not_defined # Def: NUDIX hydrolase # Organism: A.oremlandii # Pathway: not_defined # 10 146 7 147 159 95 33.0 5e-19 MITLRLISAALLFNAQGELLMMKRSMKRTLSPGMWAAVGGHLESFEMARPRAACLREIEE ETGIREDEISGLRLQYILIRLKDQDIRQQFIYVGHTDVSPRIRTSEGDLHWIPRTEILNR ELPFIFRYALEHYLSYGDTPHTWIGTAVPGSSGIPEVSWTPLQDPERT >gi|333604745|gb|AFDH01000108.1| GENE 11 8269 - 8742 613 157 aa, chain + ## HITS:1 COG:BH1214 KEGG:ns NR:ns ## COG: BH1214 COG4492 # Protein_GI_number: 15613777 # Func_class: R General function prediction only # Function: ACT domain-containing protein # Organism: Bacillus halodurans # 14 155 6 147 147 147 55.0 8e-36 MEPKQAAGWSESGFYLVNEQILPEGILKTVQAKELLARGEVKTIHEAVEQVGLSRSAFYK YKDGVFPLNKLDKERIVTISMNLEHRSGILSRVLALIAGQEGNVLTINQSIPLQGMANVV ISVETSLMGDKAKELVQLLESQDGVKKAAVIGQGSSI >gi|333604745|gb|AFDH01000108.1| GENE 12 8797 - 10086 1784 429 aa, chain + ## HITS:1 COG:BH3422 KEGG:ns NR:ns ## COG: BH3422 COG0460 # Protein_GI_number: 15615984 # Func_class: E Amino acid transport and metabolism # Function: Homoserine dehydrogenase # Organism: Bacillus halodurans # 1 429 1 429 431 470 56.0 1e-132 MKKPIKIGLLGLGTVGTGVVRIVEGHREDLEKQTGSAIVVEKVLVQDLSKLRSVTVDRDK LTDQPWDIIRNPEIDVVVEVMGGVQDTKAYILEALEQGKHIVTANKDLMAMHGPEILAKA AEKGCDVFYEASVAGGIPIIRTLVEGFSSDRITKIMGIVNGTTNYILTKMSQEGAAYADV LKEAQMLGYAESDPTSDVEGLDAARKMTILSTLGFHSEVALTDVKVKGISKVSKEDIQYG KKLGYEVKLLGIAEKHDEHISVSVEPTMVKTSHPLASVNGVFNAVYVYGEAVGETMFYGP GAGEMPTATSVVADLVAVVRNLNLGVNGQHSTAPYLEKKLKTDEQISSKYFVLLHVEDKA GVLAQITQIFAKHEVSLESVFQHPNEHNPKAEIIIITHDASQAGMNKVLAEFESLDVIQT IQSVYRVEG >gi|333604745|gb|AFDH01000108.1| GENE 13 10124 - 11194 1275 356 aa, chain + ## HITS:1 COG:BS_thrC KEGG:ns NR:ns ## COG: BS_thrC COG0498 # Protein_GI_number: 16080278 # Func_class: E Amino acid transport and metabolism # Function: Threonine synthase # Organism: Bacillus subtilis # 3 354 2 352 352 447 67.0 1e-125 MRYMGLLHQYKSYLPVTEKTPLLTLHEGNTPLIRAEKLSEELGLDLYVKYEGLNPTGSFK DRGMVMAVAKAMEEGSSTIMCASTGNTSAAAAAYAARGGLNCIVLIPNNNIALGKLAQAI IYGAKVIAIEGNFDRALEIVREITAKQPITLVNSVNPYRIEGQKTAAFEVCDQLGKAPDY LAIPVGNAGNITAYWKGFKEYQAAGKSSSLPKMIGFEAEGAMAIVKGEPILNPETVATAI RIGNPASWDGAVNAASESGGQINYVTDDEILEAYRKLASQEGIFAEPASAASLAGVIKLK REGHFRQGQSVVCVLTGNGLKDPHNAIQSVKAEPLVVEDSEAAVMDAIRQLEQVGS >gi|333604745|gb|AFDH01000108.1| GENE 14 11194 - 12156 1056 320 aa, chain + ## HITS:1 COG:sll1760 KEGG:ns NR:ns ## COG: sll1760 COG0083 # Protein_GI_number: 16330283 # Func_class: E Amino acid transport and metabolism # Function: Homoserine kinase # Organism: Synechocystis # 8 305 6 305 306 211 41.0 2e-54 MAPAAVRVRVPASTANLGPGFDALGMALDLYARIEMSEADRTQIELFGNNMQGIPTDKTN LIYKVARTLYDHAGLPMPELSIRMDSDIPLTRGLGSSASAIVGALAAANALSGADLPPDE LFQIASGMEKHPDNVGASLFGGIIAAYWDGREAKHVRIEPHERLEALVAVPAFQLSTEHA RRVLPDQVPMKDAVFNIGHSSLLVAALAAGELGMIRHAMKDALHQPYRAALVPGMEKIFR EAADHGALGAALSGAGPTLIAFADKSEGRQEELEAFLRETFRAEGIEAETRWLQPSREGV RVWKLAGGEPSFEEFAGGAE >gi|333604745|gb|AFDH01000108.1| GENE 15 12159 - 13100 913 313 aa, chain + ## HITS:1 COG:BS_pheA KEGG:ns NR:ns ## COG: BS_pheA COG0077 # Protein_GI_number: 16079842 # Func_class: E Amino acid transport and metabolism # Function: Prephenate dehydratase # Organism: Bacillus subtilis # 6 305 2 284 285 209 37.0 6e-54 MAKKQRIAMLGPGTFSEESVHHFLGRDRYEYVPFKLISDVFLATASGETDYSVIPIENTI EGSVTLHIDWLVHEVDLPMQVEWVYPIDMNLIGLPGSAHRSADDKNGLARLENGELASSP PVSWSSITKVLSHSVALAQCRKFLRTYMPQAEIEQTGSNGESVRLVSELGDPNVVAIGTT NAAGMYGMELLASKIQDNPDNSTRFILIGREKLDLPVSGHTKTTILVTPPEDYPGALHQV LSTFAWRRINLSRLESRPTKRKLGKYYFYIDVEGSLESVLVRAAFEEIEAIGCQVRILGC YPTYQYETQTPEV >gi|333604745|gb|AFDH01000108.1| GENE 16 13110 - 13991 993 293 aa, chain + ## HITS:1 COG:MK1627 KEGG:ns NR:ns ## COG: MK1627 COG0115 # Protein_GI_number: 20095063 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase # Organism: Methanopyrus kandleri AV19 # 3 293 5 294 295 342 57.0 7e-94 MAQQWIYLDGSFVTKEEAKVSVYDHGFLYGDGIFEGIRIYGGNIFKCKEHLDRLYDSAKS IMLNIPLSYQEMQDALVETIRRNELRDGYIRLVVSRGPGDLGLDPRRSPKASVIIIVEQL SIYPEEAYINGLKTVSVSSRRNIPDAVNPKIKSLNYLNNILVKIQSNLAGVGEAIMLNSQ GYVAEGSSDNIFIIKRGVVFTPPCYIGALEGITRAAIIEICERKGYTLKEEPFTLHDVYV ADEVFFTGTAAEVIAVREVDGRIIGEGKAGPITTKLLQEFRSMVTVDGVKVYE >gi|333604745|gb|AFDH01000108.1| GENE 17 14295 - 15909 866 538 aa, chain + ## HITS:1 COG:no KEGG:PPE_03648 NR:ns ## KEGG: PPE_03648 # Name: not_defined # Def: LysM repeat protein # Organism: P.polymyxa # Pathway: not_defined # 1 468 1 415 536 98 29.0 8e-19 MKIHMVKKGDSLHKIAQKYNVDLDKVIEANPHIANPHQINVGEKVKIPGTPTKPHHHDGQ HHEGHHHEGHHHEGHHHEGHHHEGHHHEGHHHEGHHHEGHHHEGHHHEGQHHLVKHIVQQ GDTLWKLSKAWGIPLKEMIEANTQLKNPSVLMTGETVYIPKKGHKEQEGGQGYQPHHGGT AHGKKNTAPIQPAVPAPEVVEQKPEAVQIPELPEINQITKITEINLNLAKVTEHKEEVKI ELPIQPKPQVQLPVIEQPPLQPAPQPPVPEYQLPQLVLPQIELPSYTPQPPPQHPCEPVV PAPYPAYVKEAEAIPDCGGFPEILPMIQPCPPYAPFVSPYGHHHDMWKKEPCGCEGELPV PYGHHGAYEGGWGHPQTLPYPNVEIPQGIPSYQAMVAAQEEFIQPTGQIQVQPYPSQPWF PSQPGLYGGAGVGPDLNTPYTDGAYCPEKPVFGQQPGWPEPYAPFSHGGFEHGGHGHVGG WPQSYEQGGVWPQGYASPQEAEQAVYAAGGFEHGGAWPQGYAPQHQPDHGQYAPGGYE Prediction of potential genes in microbial genomes Time: Sun Jul 17 10:06:15 2011 Seq name: gi|333604565|gb|AFDH01000109.1| Paenibacillus sp. HGF7 contig00001, whole genome shotgun sequence Length of sequence - 180030 bp Number of predicted genes - 174, with homology - 152 Number of transcription units - 99, operones - 45 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 339 - 372 4.0 1 1 Tu 1 . - CDS 401 - 985 538 ## - Prom 1122 - 1181 7.3 - Term 1227 - 1271 9.2 2 2 Tu 1 . - CDS 1350 - 2318 1038 ## Closa_3600 GCN5-related N-acetyltransferase - Prom 2377 - 2436 5.0 - Term 2443 - 2504 11.2 3 3 Op 1 38/0.000 - CDS 2605 - 3465 945 ## COG0395 ABC-type sugar transport system, permease component 4 3 Op 2 35/0.000 - CDS 3484 - 4386 935 ## COG1175 ABC-type sugar transport systems, permease components - Prom 4409 - 4468 3.0 - Term 4422 - 4455 1.2 5 3 Op 3 2/0.176 - CDS 4473 - 5894 1711 ## COG1653 ABC-type sugar transport system, periplasmic component 6 3 Op 4 . - CDS 5927 - 6841 881 ## COG2103 Predicted sugar phosphate isomerase - Prom 6877 - 6936 5.8 - Term 7004 - 7032 -1.0 7 4 Op 1 . - CDS 7096 - 7161 62 ## 8 4 Op 2 . - CDS 7205 - 8071 890 ## COG1737 Transcriptional regulators - Prom 8136 - 8195 5.7 - Term 8459 - 8490 1.5 9 5 Op 1 . - CDS 8512 - 8997 511 ## COG0669 Phosphopantetheine adenylyltransferase 10 5 Op 2 . - CDS 8994 - 9416 401 ## COG4186 Predicted phosphoesterase or phosphohydrolase - Prom 9453 - 9512 5.0 11 6 Tu 1 . + CDS 9354 - 9569 101 ## + Term 9722 - 9757 0.1 + Prom 9823 - 9882 6.3 12 7 Op 1 22/0.000 + CDS 9974 - 10228 256 ## COG1918 Fe2+ transport system protein A 13 7 Op 2 2/0.176 + CDS 10225 - 10956 831 ## COG0370 Fe2+ transport system protein B 14 7 Op 3 . + CDS 10934 - 12340 1578 ## COG0370 Fe2+ transport system protein B - Term 12217 - 12274 7.2 15 8 Tu 1 . - CDS 12502 - 12588 105 ## - Term 12608 - 12654 9.6 16 9 Op 1 . - CDS 12662 - 13945 468 ## GYMC10_2871 hypothetical protein 17 9 Op 2 . - CDS 13911 - 14474 337 ## COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog - Prom 14546 - 14605 4.3 + Prom 14824 - 14883 1.6 18 10 Tu 1 . + CDS 14904 - 15062 186 ## + Term 15103 - 15137 4.3 - Term 15228 - 15267 3.5 19 11 Tu 1 . - CDS 15388 - 16572 1183 ## COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases - Prom 16645 - 16704 5.3 20 12 Tu 1 . - CDS 16789 - 18228 1474 ## COG1113 Gamma-aminobutyrate permease and related permeases - Term 18568 - 18607 7.3 21 13 Tu 1 . - CDS 18782 - 19315 511 ## BMQ_pBM70170 hypothetical protein - Prom 19461 - 19520 5.8 22 14 Op 1 18/0.000 + CDS 19489 - 19953 468 ## COG1846 Transcriptional regulators 23 14 Op 2 . + CDS 19967 - 21268 1326 ## COG0477 Permeases of the major facilitator superfamily + Term 21276 - 21314 5.2 - Term 21264 - 21302 1.4 24 15 Tu 1 . - CDS 21408 - 21860 421 ## COG1051 ADP-ribose pyrophosphatase - Prom 21882 - 21941 1.8 + Prom 22067 - 22126 6.0 25 16 Tu 1 . + CDS 22161 - 22388 309 ## GYMC10_4065 hypothetical protein + Term 22433 - 22479 10.8 - Term 22430 - 22457 0.1 26 17 Tu 1 . - CDS 22495 - 22650 260 ## - Prom 22857 - 22916 3.1 + Prom 22776 - 22835 6.0 27 18 Tu 1 . + CDS 22894 - 24378 1707 ## COG1012 NAD-dependent aldehyde dehydrogenases + Term 24407 - 24445 6.0 + Prom 24476 - 24535 3.3 28 19 Tu 1 . + CDS 24566 - 25036 451 ## BMD_3838 hypothetical protein + Term 25146 - 25187 1.4 - Term 25339 - 25371 2.5 29 20 Tu 1 . - CDS 25398 - 26312 1009 ## COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases - Prom 26424 - 26483 7.6 + Prom 26362 - 26421 6.9 30 21 Tu 1 . + CDS 26487 - 27383 883 ## COG0583 Transcriptional regulator + Prom 27515 - 27574 5.2 31 22 Tu 1 . + CDS 27650 - 28948 1512 ## COG2252 Permeases + Term 29022 - 29072 2.5 - Term 29010 - 29060 2.5 32 23 Tu 1 . - CDS 29085 - 29285 231 ## - Prom 29335 - 29394 3.9 + Prom 29256 - 29315 4.5 33 24 Tu 1 . + CDS 29419 - 29916 616 ## BMB171_C1283 cAMP-dependent protein kinase + Term 29924 - 29967 7.6 - Term 29917 - 29950 5.2 34 25 Tu 1 . - CDS 29956 - 31188 1245 ## COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 - Prom 31216 - 31275 3.8 + Prom 31246 - 31305 1.9 35 26 Tu 1 . + CDS 31382 - 33013 1664 ## COG1649 Uncharacterized protein conserved in bacteria + Term 33020 - 33064 9.0 - Term 33008 - 33052 9.0 36 27 Tu 1 . - CDS 33137 - 33664 557 ## COG3981 Predicted acetyltransferase - Prom 33686 - 33745 4.0 37 28 Tu 1 . + CDS 33820 - 34173 205 ## gi|228999407|ref|ZP_04158986.1| hypothetical protein bmyco0003_39620 + Term 34226 - 34252 -1.0 38 29 Tu 1 . - CDS 34096 - 34803 490 ## BBR47_09810 hypothetical protein - Prom 34901 - 34960 6.4 - Term 34925 - 34988 1.1 39 30 Tu 1 . - CDS 34999 - 35169 120 ## BBR47_39610 hypothetical protein - Prom 35231 - 35290 5.6 40 31 Tu 1 . - CDS 35378 - 36742 469 ## COG0477 Permeases of the major facilitator superfamily - Prom 36808 - 36867 5.9 + Prom 36812 - 36871 6.2 41 32 Tu 1 . + CDS 36999 - 37568 270 ## COG2345 Predicted transcriptional regulator + Term 37629 - 37666 4.0 - Term 37614 - 37657 7.0 42 33 Tu 1 . - CDS 37675 - 39153 1294 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains - Prom 39190 - 39249 5.5 + Prom 39132 - 39191 2.7 43 34 Tu 1 . + CDS 39296 - 39409 57 ## - Term 39296 - 39344 3.1 44 35 Tu 1 . - CDS 39500 - 40144 260 ## COG1262 Uncharacterized conserved protein - Prom 40207 - 40266 7.1 - Term 40379 - 40415 6.6 45 36 Op 1 . - CDS 40495 - 40908 407 ## 46 36 Op 2 . - CDS 40909 - 41124 298 ## 47 36 Op 3 . - CDS 41152 - 41610 295 ## 48 36 Op 4 . - CDS 41678 - 42646 778 ## COG2378 Predicted transcriptional regulator - Prom 42746 - 42805 5.2 + Prom 42746 - 42805 5.4 49 37 Tu 1 . + CDS 42887 - 43783 1088 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) + Term 43793 - 43838 8.3 - Term 43782 - 43820 7.2 50 38 Tu 1 . - CDS 43863 - 44798 776 ## PROTEIN SUPPORTED gi|148988856|ref|ZP_01820271.1| 50S ribosomal protein L9 - Prom 44828 - 44887 1.7 51 39 Op 1 1/0.294 - CDS 44903 - 45151 232 ## COG0666 FOG: Ankyrin repeat 52 39 Op 2 . - CDS 45115 - 45675 357 ## COG0666 FOG: Ankyrin repeat - Term 45697 - 45724 0.1 53 39 Op 3 . - CDS 45740 - 47053 1380 ## GYMC10_2695 S-layer domain protein - Prom 47088 - 47147 2.6 + Prom 46992 - 47051 2.4 54 40 Tu 1 . + CDS 47087 - 47179 56 ## - Term 47072 - 47115 -0.1 55 41 Op 1 40/0.000 - CDS 47161 - 47850 673 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 56 41 Op 2 . - CDS 47828 - 49339 1263 ## COG0642 Signal transduction histidine kinase - Prom 49497 - 49556 6.6 + Prom 49461 - 49520 5.6 57 42 Tu 1 . + CDS 49621 - 51516 1665 ## COG0642 Signal transduction histidine kinase + Term 51549 - 51594 12.1 - Term 51537 - 51580 8.3 58 43 Op 1 . - CDS 51585 - 52337 580 ## COG1376 Uncharacterized protein conserved in bacteria 59 43 Op 2 . - CDS 52342 - 53523 741 ## BpOF4_18420 hypothetical protein - Prom 53762 - 53821 1.6 - Term 53766 - 53802 4.2 60 44 Tu 1 . - CDS 53839 - 56397 1870 ## GYMC10_3272 alpha-L-fucosidase (EC:3.2.1.51) - Prom 56427 - 56486 1.7 61 45 Op 1 7/0.000 - CDS 56701 - 58629 1788 ## COG2972 Predicted signal transduction protein with a C-terminal ATPase domain 62 45 Op 2 2/0.176 - CDS 58634 - 59653 1073 ## COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain - Term 59688 - 59730 4.5 63 46 Op 1 14/0.000 - CDS 59789 - 61339 1880 ## COG1653 ABC-type sugar transport system, periplasmic component - Prom 61387 - 61446 2.3 64 46 Op 2 7/0.000 - CDS 61453 - 62325 964 ## COG0395 ABC-type sugar transport system, permease component 65 46 Op 3 . - CDS 62342 - 63292 1274 ## COG4209 ABC-type polysaccharide transport system, permease component - Term 63349 - 63399 9.0 66 47 Op 1 . - CDS 63462 - 63986 665 ## COG2755 Lysophospholipase L1 and related esterases 67 47 Op 2 . - CDS 63980 - 65002 918 ## Cphy_0770 hypothetical protein 68 47 Op 3 . - CDS 64989 - 66827 1525 ## COG3669 Alpha-L-fucosidase 69 47 Op 4 . - CDS 66868 - 67185 493 ## COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain 70 47 Op 5 . - CDS 67282 - 69585 2159 ## GYMC10_3685 heparinase II/III family protein + Prom 69894 - 69953 5.2 71 48 Op 1 . + CDS 69988 - 70764 596 ## PPSC2_c2514 regulatory protein TetR 72 48 Op 2 . + CDS 70791 - 71537 699 ## COG0024 Methionine aminopeptidase - Term 71879 - 71910 4.1 73 49 Tu 1 . - CDS 71960 - 72427 -55 ## PPSC2_c1583 aminoglycoside nucleotidyltransferase - Prom 72605 - 72664 4.0 74 50 Tu 1 . + CDS 73919 - 74347 88 ## BcerKBAB4_3333 NADH:flavin oxidoreductase/NADH oxidase + Term 74535 - 74569 5.2 - Term 74523 - 74557 5.2 75 51 Tu 1 . - CDS 74690 - 75307 752 ## COG1051 ADP-ribose pyrophosphatase - Prom 75376 - 75435 5.2 - Term 75333 - 75376 3.3 76 52 Tu 1 . - CDS 75437 - 76690 1221 ## - Term 76871 - 76912 9.1 77 53 Tu 1 . - CDS 76960 - 80301 3458 ## COG0366 Glycosidases - Term 80339 - 80389 11.2 78 54 Op 1 7/0.000 - CDS 80411 - 81520 1181 ## COG0448 ADP-glucose pyrophosphorylase 79 54 Op 2 6/0.059 - CDS 81528 - 82676 1310 ## COG0448 ADP-glucose pyrophosphorylase 80 54 Op 3 . - CDS 82666 - 84615 1612 ## COG0296 1,4-alpha-glucan branching enzyme - Prom 84828 - 84887 3.0 + Prom 84689 - 84748 5.1 81 55 Op 1 . + CDS 84867 - 85733 847 ## COG1092 Predicted SAM-dependent methyltransferases 82 55 Op 2 . + CDS 85737 - 86474 198 ## PROTEIN SUPPORTED gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit + Term 86567 - 86609 9.0 83 56 Tu 1 . - CDS 86439 - 86843 501 ## COG1846 Transcriptional regulators - Prom 86911 - 86970 3.8 84 57 Tu 1 . + CDS 87425 - 87592 258 ## + Term 87640 - 87677 1.3 - Term 87429 - 87459 5.0 85 58 Op 1 24/0.000 - CDS 87611 - 90073 2542 ## COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit 86 58 Op 2 . - CDS 90098 - 92071 2082 ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit 87 58 Op 3 24/0.000 - CDS 92120 - 93112 878 ## COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component 88 58 Op 4 1/0.294 - CDS 93105 - 94094 961 ## COG1131 ABC-type multidrug transport system, ATPase component 89 58 Op 5 . - CDS 94109 - 94918 965 ## COG2755 Lysophospholipase L1 and related esterases - Prom 95031 - 95090 5.7 + Prom 95073 - 95132 4.8 90 59 Tu 1 . + CDS 95178 - 95861 619 ## gi|304408268|ref|ZP_07389916.1| hypothetical protein PaecuDRAFT_4594 + Term 95949 - 95991 -0.4 - Term 95875 - 95916 9.7 91 60 Tu 1 . - CDS 95928 - 97064 1271 ## COG1835 Predicted acyltransferases - Term 97190 - 97230 3.0 92 61 Op 1 35/0.000 - CDS 97256 - 99106 261 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 93 61 Op 2 . - CDS 99099 - 100883 201 ## PROTEIN SUPPORTED gi|225084369|ref|YP_002657150.1| ribosomal protein S16 - Prom 100946 - 101005 4.9 - Term 101161 - 101213 12.8 94 62 Op 1 . - CDS 101216 - 101452 73 ## 95 62 Op 2 . - CDS 101512 - 105291 3874 ## COG0699 Predicted GTPases (dynamin-related) - Prom 105333 - 105392 4.3 96 63 Op 1 . - CDS 105491 - 105769 338 ## PPSC2_c3032 hypothetical protein 97 63 Op 2 . - CDS 105828 - 106433 525 ## COG0177 Predicted EndoIII-related endonuclease - Prom 106488 - 106547 5.4 - Term 106566 - 106602 4.7 98 64 Op 1 . - CDS 106612 - 109278 2934 ## GYMC10_2281 S-layer domain protein 99 64 Op 2 . - CDS 109338 - 109922 667 ## GYMC10_2280 lipoprotein LpqB, GerMN domain protein 100 64 Op 3 . - CDS 109944 - 111353 1270 ## COG0860 N-acetylmuramoyl-L-alanine amidase - Prom 111412 - 111471 5.0 - Term 111593 - 111627 5.2 101 65 Op 1 30/0.000 - CDS 111655 - 112263 646 ## COG0066 3-isopropylmalate dehydratase small subunit 102 65 Op 2 . - CDS 112299 - 113720 1357 ## COG0065 3-isopropylmalate dehydratase large subunit - Prom 113793 - 113852 3.7 + Prom 113752 - 113811 5.3 103 66 Tu 1 . + CDS 113851 - 114765 932 ## COG0583 Transcriptional regulator + Prom 114788 - 114847 1.8 104 67 Op 1 . + CDS 114867 - 115127 392 ## COG2261 Predicted membrane protein 105 67 Op 2 . + CDS 115206 - 115571 406 ## Pjdr2_1823 general stress protein + Term 115614 - 115654 8.9 106 68 Tu 1 . + CDS 115699 - 116028 403 ## GYMC10_5547 hypothetical protein + Term 116147 - 116182 -0.9 - Term 116120 - 116168 9.5 107 69 Op 1 . - CDS 116179 - 116493 302 ## - Prom 116519 - 116578 2.1 108 69 Op 2 . - CDS 116641 - 117582 883 ## COG0598 Mg2+ and Co2+ transporters - Prom 117604 - 117663 2.0 - Term 117609 - 117643 5.3 109 70 Op 1 6/0.059 - CDS 117676 - 118455 668 ## COG1191 DNA-directed RNA polymerase specialized sigma subunit 110 70 Op 2 8/0.000 - CDS 118452 - 118901 409 ## COG2172 Anti-sigma regulatory factor (Ser/Thr protein kinase) 111 70 Op 3 . - CDS 118922 - 119257 392 ## COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) - Prom 119307 - 119366 5.3 112 71 Tu 1 . - CDS 119404 - 119862 541 ## COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain - Prom 120088 - 120147 2.6 + Prom 119924 - 119983 5.3 113 72 Op 1 . + CDS 120057 - 120518 593 ## COG0783 DNA-binding ferritin-like protein (oxidative damage protectant) 114 72 Op 2 . + CDS 120559 - 120717 215 ## GYMC10_5170 hypothetical protein + Term 120732 - 120764 2.5 - Term 121043 - 121084 4.5 115 73 Op 1 . - CDS 121113 - 121748 584 ## Pjdr2_1862 hypothetical protein 116 73 Op 2 . - CDS 121806 - 122198 375 ## 117 73 Op 3 . - CDS 122212 - 123393 1005 ## COG0448 ADP-glucose pyrophosphorylase - Term 123675 - 123722 8.0 118 74 Op 1 . - CDS 123728 - 124912 1207 ## COG0642 Signal transduction histidine kinase 119 74 Op 2 7/0.000 - CDS 124959 - 125828 764 ## COG1352 Methylase of chemotaxis methyl-accepting proteins 120 74 Op 3 3/0.059 - CDS 125912 - 129589 3778 ## COG0784 FOG: CheY-like receiver 121 74 Op 4 . - CDS 129640 - 130779 1185 ## COG2208 Serine phosphatase RsbU, regulator of sigma subunit - Prom 131001 - 131060 5.0 + Prom 130967 - 131026 5.0 122 75 Op 1 . + CDS 131236 - 131673 506 ## GYMC10_5556 YflT 123 75 Op 2 . + CDS 131778 - 131942 226 ## + Term 132000 - 132038 9.3 - Term 131988 - 132026 5.5 124 76 Tu 1 . - CDS 132043 - 132858 859 ## COG0388 Predicted amidohydrolase - Prom 132898 - 132957 4.2 + Prom 132857 - 132916 3.4 125 77 Tu 1 . + CDS 133071 - 134354 1002 ## + Prom 134360 - 134419 4.0 126 78 Tu 1 . + CDS 134573 - 135724 1139 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase + Term 135741 - 135774 6.1 + Prom 136132 - 136191 3.0 127 79 Op 1 22/0.000 + CDS 136224 - 137348 1261 ## COG0263 Glutamate 5-kinase + Term 137353 - 137381 -1.0 + Prom 137396 - 137455 2.5 128 79 Op 2 2/0.176 + CDS 137493 - 138740 1231 ## COG0014 Gamma-glutamyl phosphate reductase + Term 138759 - 138790 2.1 129 80 Op 1 . + CDS 138806 - 139660 736 ## COG0345 Pyrroline-5-carboxylate reductase 130 80 Op 2 1/0.294 + CDS 139703 - 141007 1230 ## COG1850 Ribulose 1,5-bisphosphate carboxylase, large subunit 131 80 Op 3 1/0.294 + CDS 141004 - 141672 535 ## COG4359 Uncharacterized conserved protein, possibly involved in methylthioadenosine recycling 132 80 Op 4 . + CDS 141669 - 142307 667 ## COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases + Term 142410 - 142459 -0.8 - Term 142396 - 142446 6.2 133 81 Op 1 4/0.059 - CDS 142486 - 143175 664 ## COG3935 Putative primosome component and related proteins 134 81 Op 2 . - CDS 143248 - 144543 1294 ## COG0017 Aspartyl/asparaginyl-tRNA synthetases - Term 144564 - 144593 0.4 135 82 Op 1 . - CDS 144643 - 145860 1230 ## COG0282 Acetate kinase 136 82 Op 2 . - CDS 145857 - 146729 892 ## COG1250 3-hydroxyacyl-CoA dehydrogenase - Prom 146785 - 146844 6.5 - Term 147101 - 147146 8.7 137 83 Op 1 . - CDS 147173 - 148693 745 ## PROTEIN SUPPORTED gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 138 83 Op 2 . - CDS 148690 - 149223 527 ## GYMC10_2246 hypothetical protein - Prom 149267 - 149326 5.2 139 84 Op 1 . - CDS 149355 - 149858 760 ## BcerKBAB4_1469 peptidase 140 84 Op 2 . - CDS 149886 - 151184 1190 ## COG0402 Cytosine deaminase and related metal-dependent hydrolases - Prom 151234 - 151293 5.3 + Prom 151278 - 151337 6.3 141 85 Op 1 21/0.000 + CDS 151425 - 152054 612 ## COG1392 Phosphate transport regulator (distant homolog of PhoU) 142 85 Op 2 . + CDS 152078 - 153091 1080 ## COG0306 Phosphate/sulphate permeases + Term 153282 - 153327 0.9 - Term 153113 - 153156 7.2 143 86 Op 1 . - CDS 153192 - 153815 674 ## COG2344 AT-rich DNA-binding protein 144 86 Op 2 . - CDS 153802 - 156675 2475 ## COG1199 Rad3-related DNA helicases - Prom 156707 - 156766 1.9 145 87 Op 1 . - CDS 156795 - 157433 555 ## GYMC10_2241 hypothetical protein 146 87 Op 2 12/0.000 - CDS 157524 - 157907 436 ## COG0853 Aspartate 1-decarboxylase 147 87 Op 3 19/0.000 - CDS 157912 - 158793 889 ## COG0414 Panthothenate synthetase 148 87 Op 4 1/0.294 - CDS 158833 - 159693 1012 ## COG0413 Ketopantoate hydroxymethyltransferase - Prom 159719 - 159778 3.7 - Term 159768 - 159804 2.0 149 88 Op 1 4/0.059 - CDS 159985 - 160959 860 ## COG0340 Biotin-(acetyl-CoA carboxylase) ligase 150 88 Op 2 3/0.059 - CDS 160963 - 162471 1079 ## COG0617 tRNA nucleotidyltransferase/poly(A) polymerase 151 88 Op 3 3/0.059 - CDS 162506 - 163684 1244 ## COG0438 Glycosyltransferase 152 88 Op 4 2/0.176 - CDS 163687 - 164403 744 ## COG2120 Uncharacterized proteins, LmbE homologs 153 88 Op 5 3/0.059 - CDS 164403 - 164825 424 ## COG1803 Methylglyoxal synthase - Prom 164878 - 164937 2.4 154 89 Op 1 . - CDS 164942 - 165748 721 ## COG0289 Dihydrodipicolinate reductase 155 89 Op 2 . - CDS 165782 - 166303 580 ## Pjdr2_2438 tetratricopeptide TPR_2 repeat protein 156 89 Op 3 . - CDS 166359 - 166697 416 ## COG1694 Predicted pyrophosphatase - Prom 166741 - 166800 5.9 + Prom 166754 - 166813 2.5 157 90 Tu 1 . + CDS 166872 - 167303 352 ## + Term 167328 - 167365 -0.8 - Term 167311 - 167359 3.2 158 91 Tu 1 . - CDS 167381 - 167548 94 ## + Prom 167379 - 167438 2.9 159 92 Tu 1 . + CDS 167475 - 168353 981 ## COG1284 Uncharacterized conserved protein 160 93 Op 1 . - CDS 168350 - 169219 638 ## GYMC10_2228 hypothetical protein 161 93 Op 2 2/0.176 - CDS 169263 - 169922 798 ## COG4347 Predicted membrane protein - Term 169972 - 170013 8.0 162 94 Op 1 5/0.059 - CDS 170024 - 170914 826 ## COG1290 Cytochrome b subunit of the bc complex 163 94 Op 2 28/0.000 - CDS 170935 - 171606 502 ## COG1290 Cytochrome b subunit of the bc complex 164 94 Op 3 . - CDS 171625 - 172170 350 ## COG0723 Rieske Fe-S protein - Prom 172346 - 172405 6.0 165 95 Tu 1 . - CDS 172425 - 172874 418 ## Pjdr2_2430 hypothetical protein - Prom 172945 - 173004 2.9 166 96 Op 1 . - CDS 173082 - 173270 220 ## 167 96 Op 2 . - CDS 173325 - 173840 447 ## COG0663 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily - Prom 173866 - 173925 3.7 168 97 Tu 1 . - CDS 173942 - 175057 1195 ## Pjdr2_2428 hypothetical protein - Prom 175134 - 175193 2.7 - Term 175169 - 175216 10.9 169 98 Op 1 . - CDS 175230 - 175805 449 ## COG0406 Fructose-2,6-bisphosphatase - Term 175815 - 175846 2.1 170 98 Op 2 . - CDS 175870 - 176502 369 ## BBR47_24840 hypothetical protein 171 98 Op 3 . - CDS 176499 - 177095 470 ## COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog - Term 177445 - 177517 5.1 172 99 Op 1 9/0.000 - CDS 177542 - 178630 907 ## COG0287 Prephenate dehydrogenase 173 99 Op 2 2/0.176 - CDS 178656 - 179756 1118 ## COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase 174 99 Op 3 . - CDS 179807 - 180028 226 ## COG0159 Tryptophan synthase alpha chain Predicted protein(s) >gi|333604565|gb|AFDH01000109.1| GENE 1 401 - 985 538 194 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGMEAELERLKRLVFQLLLTTENRTTDFLELITGETMIPSVLKQSTATQAPLLAVKEGTR DAVLRESLLRTEKSGLVVSQNIAVMYPDFIPLPINLKLAQKKEGIGKIMRDLNIRNTRTI LDFGWRKPEHTTDLTGNPYSVTFADNPAVPYKQYTITFEEFNTPGLHLLEYFNPRMLEGK EIAAGQEVYNARVN >gi|333604565|gb|AFDH01000109.1| GENE 2 1350 - 2318 1038 322 aa, chain - ## HITS:1 COG:no KEGG:Closa_3600 NR:ns ## KEGG: Closa_3600 # Name: not_defined # Def: GCN5-related N-acetyltransferase # Organism: C.saccharolyticum # Pathway: not_defined # 26 320 29 321 326 212 38.0 2e-53 MIETWNESYSDAVIRLWNTEAVKDGYKELTGRSFNEIFLSSPYFDKDNTFVMREEDGTVT GFACGCTGDDLPLGAVAGYITCIVLSEDRQTDANYRLLLEALEGRFRQLGKKQADVLFFN PMMLPWYIPDTPGHEHNNAPGVPADSRLYGFLLGEGYIERARECAMYLNLSGFSIPDEIR AKEERTAADGYTVGLFDPARHEGIEAMLQGFDNPLWQKEIAAGTANGVPVVIAAHRGQAI GFAGPVIRQASGRGYFAGIGVHPDHEGHGLGSLLFFRLCEAFKGIGTEYMSLYTGSTNPA IRIYEKAGFKTVKQFAVMRKAL >gi|333604565|gb|AFDH01000109.1| GENE 3 2605 - 3465 945 286 aa, chain - ## HITS:1 COG:lin0761 KEGG:ns NR:ns ## COG: lin0761 COG0395 # Protein_GI_number: 16799835 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Listeria innocua # 16 279 10 285 291 187 36.0 2e-47 MALYNNHAGNRAARYSRNTVIIVILTLFALATIFPIYFMLISSFGDPIEAGAVSYSLLPT KFTLESYKFFFDYSEYSIRWLLNSLIVATTVMVSNVIFASMAGYAFSKIKFKGRAMLFTI LLIAMMIPYQVTQVPLYILIVNIFHIQNTYSALILPGLVTVYNIFLAKQFMSSIPTEIIE SAKIEGCNQFQIYFRVILPLSKTVLAVMAILTFMDSWNTFFWPFLVTNTMDMQTIQVGLK NFRFANTTYFAPMMAGATISALPMFVLFFSLQRYFLEGVTVGAVKG >gi|333604565|gb|AFDH01000109.1| GENE 4 3484 - 4386 935 300 aa, chain - ## HITS:1 COG:SPy0254 KEGG:ns NR:ns ## COG: SPy0254 COG1175 # Protein_GI_number: 15674434 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Streptococcus pyogenes M1 GAS # 21 300 40 320 320 192 40.0 5e-49 MTQPAKPVKRRKIRGDGAWGYAFIAVALLVYALFTAYPVISAFIISFQKYRPLGSTFIGF DNYTATFKDPLFWKSVVNTIVYTVLTVPVALFLSFAVAILILPLKKKLQTTFKAIYYLPA VASGVALSVVWLWIFDPMPSGILNKLISYIGISNQNWLGSSATAMFSLVLMAWLSSHGTS IIIYLAALLGIDESYYEAAELDGASFIKKLWYIVIPCLKPTTLFLLVTGVIGSFQVFQNA YLMTGGGPDNATTMVGLLVFNNAFKYFDFGKAAAQSLILAFIIAGISLVQFKFLGKEVEY >gi|333604565|gb|AFDH01000109.1| GENE 5 4473 - 5894 1711 473 aa, chain - ## HITS:1 COG:SPy0252 KEGG:ns NR:ns ## COG: SPy0252 COG1653 # Protein_GI_number: 15674433 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Streptococcus pyogenes M1 GAS # 5 349 3 334 439 73 25.0 1e-12 MKRKLRAAASVLALTMAMSTLAACGDSGKKEGGAAGDPNAKDTITALLPPVSATYQNNFA QMSKDFNALYPNLTLKIEPASWEDITQKLDTQVNAGSPPDIAFMGSDGISKYMQQEMMMD IKDVATKEMVEDFDQAPLEYMKKGDGLYGFPGYMEVHAIGGNREYLEKAGIDWKKVQKDG WTFDEFREAIKKGVVSEGGKTSRYGFVFATAGVASKDYLNILIKNAGMPAPFTKDLKYAY TSKNYLEVLKDIRTMIDDGSMPKELSSIDAGKRWNMFLTGQTMITGKGLATFENSAKKNN EKLKANDGSAVKGSVPVEYTVLPVPTFAGQKPQSSVAVDGYVTFRGSKEPTAEHKANVVK AAYFLASGKVAATTNNDLFVAHITKSGKKEAESMTVNRDADNKAAVETMLKNAAPARPDI PADLGAKAIKLEEEVIIPKLQALISGEMTPEAMYEAVKAAAVQTFGADGVVKE >gi|333604565|gb|AFDH01000109.1| GENE 6 5927 - 6841 881 304 aa, chain - ## HITS:1 COG:CAC0175 KEGG:ns NR:ns ## COG: CAC0175 COG2103 # Protein_GI_number: 15893468 # Func_class: R General function prediction only # Function: Predicted sugar phosphate isomerase # Organism: Clostridium acetobutylicum # 1 298 1 298 302 289 54.0 4e-78 MDEYLARLTTEEINEKTQRIDEYTTEQMLRLMNEQDATVPAAVAAEIPQIVKAVDILHEV LKNGGRMFYIGAGSSGRLGVLDASECPPTFGIDPLRVQGHIAGGDGALRIAVEGFEDNKD EGIALIERCGVTDKDAVIGITASGSAQFVIAGLNKAREIGAATIGLVNNKHSKLESVCDV CIAPVVGPEVIMGSTRLKAGTAQKLVLNMLTTCTMVKLGKTYNNLMVDLKASNIKLKDRS VRIIKAATGVDDKTAAAVLESASMSCKLAIMMIKSGLDAASAQRVLDQCEGSLKAAIRTT TNVV >gi|333604565|gb|AFDH01000109.1| GENE 7 7096 - 7161 62 21 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MMKDTDLPSVVEFGRIDDNGC >gi|333604565|gb|AFDH01000109.1| GENE 8 7205 - 8071 890 288 aa, chain - ## HITS:1 COG:CAC0191 KEGG:ns NR:ns ## COG: CAC0191 COG1737 # Protein_GI_number: 15893484 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Clostridium acetobutylicum # 8 277 5 273 283 208 43.0 1e-53 MAINDNVLIKIRQMKTSLTPVEKAVGEYILENVEEIPHLSIKNLARLTKTSDASVLRFCK TIGYSGYRSFIVSISASLGSMHEEDTNPYRDIQPGDDLSTIILNISRTNSQSIEDTLQVI NKSEIARAVEVLRSCRRIAFFGIGASGLVGIDAEQKFSRINKMCHTYTDGHSMLTAATLL EKGDVAIFISNSGETVEILDALEIAKKNGACLIAVTKYTKSRLADQANILLSISTPEITI RSGAMGSRIAMLTVVDILFAGVASAEYKHVKKYLTKTHNIVAGKQRRY >gi|333604565|gb|AFDH01000109.1| GENE 9 8512 - 8997 511 161 aa, chain - ## HITS:1 COG:SA0973 KEGG:ns NR:ns ## COG: SA0973 COG0669 # Protein_GI_number: 15926709 # Func_class: H Coenzyme transport and metabolism # Function: Phosphopantetheine adenylyltransferase # Organism: Staphylococcus aureus N315 # 2 130 5 134 160 102 39.0 4e-22 MIAVYAGSFDPITLGHTSVIDRATNLFDELHILVANNRAKKHHFTIGQRTELVRLSIPPG KRIKIVAFEGIVADYVNETGAKAIVRGIRNATDFEYEMQLEQYIRNTTKADTVYLSPYTP NMQTSSSLVRMFIATGKVEPAGAFMVEAAFEQMRIYESENK >gi|333604565|gb|AFDH01000109.1| GENE 10 8994 - 9416 401 140 aa, chain - ## HITS:1 COG:SMb20398 KEGG:ns NR:ns ## COG: SMb20398 COG4186 # Protein_GI_number: 16264132 # Func_class: R General function prediction only # Function: Predicted phosphoesterase or phosphohydrolase # Organism: Sinorhizobium meliloti # 5 129 33 158 164 62 31.0 3e-10 MTDVMIQKWNAVVGSEDKVFHLGDFSFLNQERTQEIVGKLNGYKFLVLGNHDRGRSRSWW LDAGFDEVSEYPVLYKDFFLLSHEPVYMNKHMPYVNVHGHIHGQKYEGKNYFNVCVEHWD YTPLTFEQIRDAVVVSEEQA >gi|333604565|gb|AFDH01000109.1| GENE 11 9354 - 9569 101 71 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKHLVFASDYGIPFLNHDVRHFVRIRKRPGLEIDNKFMPEMMVRNKKSLGMSYSSLHKIP ECYSNQPLHTC >gi|333604565|gb|AFDH01000109.1| GENE 12 9974 - 10228 256 84 aa, chain + ## HITS:1 COG:TM0050 KEGG:ns NR:ns ## COG: TM0050 COG1918 # Protein_GI_number: 15642825 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+ transport system protein A # Organism: Thermotoga maritima # 6 82 1 77 154 65 40.0 3e-11 MSLSELSLDQVKVGSVVRLSRIEVQGGMRRRLLDLGFVPGNRVEVIQRSPLGDPTAFRVS NTTIALRKEESSLIYTEPEGGDSL >gi|333604565|gb|AFDH01000109.1| GENE 13 10225 - 10956 831 243 aa, chain + ## HITS:1 COG:MA3477 KEGG:ns NR:ns ## COG: MA3477 COG0370 # Protein_GI_number: 20092288 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+ transport system protein B # Organism: Methanosarcina acetivorans str.C2A # 6 221 13 229 670 189 44.0 4e-48 MRTYTVALAGNPNTGKSTLFNRLTGLRQHTGNWAGKTVLTAEGEFERNGILYKLIDLPGT YSLYSNSADEEAARDYIIFEQPDVTLVVLDATSLERNLNLALQVLEMTSRAVVCINLMDE AEKLGIKIDLDQIRERLGVPVAAISARNNKGIGPMLDLVEKVAEGVIHPEPPPIPYSEEI ERQVRELEPFVRETLGARYPARWVALRLLDGDENLIASLKQRLNGAAAAQGQGVMSYGHT ACN >gi|333604565|gb|AFDH01000109.1| GENE 14 10934 - 12340 1578 468 aa, chain + ## HITS:1 COG:lin2209 KEGG:ns NR:ns ## COG: lin2209 COG0370 # Protein_GI_number: 16801274 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+ transport system protein B # Organism: Listeria innocua # 43 465 252 663 664 178 31.0 2e-44 MATPHATNRPDPIDSLLSMAQTITSGSSIRDEIVSDIYKTSCDICNAAVRYEDRKKLAST HKLDKILTSKLWGYPIMFAVLGAIFWITIAGANVPSGWIADFFGVIEGYLTAGFQAVHAP AWLHGILVLGFFRGTAWVISVMLPPMAIFFPIFALLENFGYLPRVAFNMDRLFKKSGGHG KQALTMSMGFGCNAAAILSTRIIESPRERMLAILTNNFVPCNGRWPTLILLSSLFMAAGA SGGWQTLGTALFVMGLVLFGIVITLSVSWALSKTALRGVPTHYTLELPPYRKPQMWKTIL LASRDKSWAVLKRAVIVAAPAGIITWILGNIMIGGTSILAHTAAFFDPFAHLIGLDGYII MAFILGLPANEIVLPILLMGYMSSGAMVDADGLDNIKDLFLQHGWTWLTALNMMLFSLLH YPCGTTLYNIYKETKSTKWTILSALIPLAIALLVTFATAQAARAFGWV >gi|333604565|gb|AFDH01000109.1| GENE 15 12502 - 12588 105 28 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MCILGYTFIGSGFAGAIFTHTYDMKAFG >gi|333604565|gb|AFDH01000109.1| GENE 16 12662 - 13945 468 427 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_2871 NR:ns ## KEGG: GYMC10_2871 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 427 1 439 439 548 64.0 1e-154 MKTIEEKLQEYKRVQAPSELEGRLRDALQRIPAKKRNMNKAVAWVASAVAALIMMVGLYE YPAFAYYGSKLFNGASLNSLSFSELTEQGYGQQVNKSTTFKDGTVFTINGVIADDNVFTL YYTIDRPAGTEYTDEDFIRYHFSNLKGFLTDSNSRGGGGNPGKDKSQFVGVHQFEPVSPF SRTLTLTFNERLDNGERVSYPISFDFDANKAMKSIIKEDLSETIPVDQGKIHYDSITASP SSTIVKGHYELEGSPRFSGETKLYVNGTEVKSLGMKATSPEFELKFDVLPTDKIQSIELV LEDFTGIQKIEKPISLASPSDHSINVGQEKVWIRSVTKTDTGYDIVIAGNEFVFFEKDNI SIQAGGSVVPVSEISSSRPWDLKNGNIMWEQTYSFNTTDKPEFLLLDELQYIKAYNKKIS IPVNNKK >gi|333604565|gb|AFDH01000109.1| GENE 17 13911 - 14474 337 187 aa, chain - ## HITS:1 COG:BH2026 KEGG:ns NR:ns ## COG: BH2026 COG1595 # Protein_GI_number: 15614589 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog # Organism: Bacillus halodurans # 1 178 1 179 179 199 61.0 2e-51 MKVSHLVKQAKKDNKEALLQLIMADQDAYYRLAYAYMGNEHDAMDAMEDMIVTLYEKIDQ LQKGEAFYSWSKTILVNRCKTLLRKKGRFSPLEDEQEEALAAFTDDNPYHHTESELDMHT LLSHLNAPQREAIELRYVHDLPYQTIADMTGVPLGTVKSRISQGLHKLKAMIGGNRYEND RGEITGV >gi|333604565|gb|AFDH01000109.1| GENE 18 14904 - 15062 186 52 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKFLVWLLKAIFVLPAVLLMEIVFGHQGTLFLKETAQKEDTGGEMYSKIEKR >gi|333604565|gb|AFDH01000109.1| GENE 19 15388 - 16572 1183 394 aa, chain - ## HITS:1 COG:slr1179 KEGG:ns NR:ns ## COG: slr1179 COG2377 # Protein_GI_number: 16332285 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted molecular chaperone distantly related to HSP70-fold metalloproteases # Organism: Synechocystis # 21 393 1 371 376 239 37.0 7e-63 MILGIKEEEVIAIGLMSGTSLDGIDAAVVRINGSGLDTRLELLHFHSRPYDDALREKLKD LCSVARSDVALVCGMNVFLAERMAEAALEAVREAGLTMDRIGFIASHGQTVWHIPEGDAA DPYLVRSTLQLGDLSVLAKRTGVPVVGDFRPADMAVGGQGAPLVPYGDLILFRHETKGRL LQNIGGIGNCTVLPPQAGPSDVFAFDTGPGNMVIDQVVYQLSGGRHSYDESGSWAAQGRT DEGLVADAMTHPYFRVKPPKSTGREVFGKAYAADFIARAKALGLADADIVATATAFTART IAEGCRRFVFPRCRVDEVIVSGGGAHNRTLLSMLAELLPDQHVTTSGAFGVHDDAKEAVI FALLGNDFLRGIPNNLPSATGAARPTVMGKLALP >gi|333604565|gb|AFDH01000109.1| GENE 20 16789 - 18228 1474 479 aa, chain - ## HITS:1 COG:BH2171 KEGG:ns NR:ns ## COG: BH2171 COG1113 # Protein_GI_number: 15614734 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Bacillus halodurans # 4 446 2 443 455 498 61.0 1e-141 MEKKETAGEDEKKLKWWQLSLLGVAFTIGTGYFLGSSLAITIGGPAVLISFVLAAFGTYL VFDVLARMTAADPVKGSFRSYAKKAYGRWAGFSSGWVYWSSELLIMGSQLTALSLFSRFW FPAVPMWGFAAGYGMLGLGIIMLGTKGFERMENLFAVIKISAIVMFLVIAALALFGIIRG SRSPSFPAEASTLFPAGATGLWSSLIFAFYAFGGIEIMGLMALRLQKPEEAPKAGKIMLL LLAVVYVLSIGLAVTLLPWSVFHTKESPFVLALSHYRLPFIPHVFNGVLIIAGFSTMTAS LFAVTTMLVTLAEDKDAPKLFARRWKKNLPLPALGLTACGMAASILLALLMPEGVYEHIT TAAGLLLLYNWLFILITAGKLLRLKALGQAKRITGIALILLAVSGTLAHHGSRPGFYVSL GFIGVIGLVTWLRIRQWNKAGDNSGRQEQADPDGEEEWVFTPALSMREKTDVFFRKKSR >gi|333604565|gb|AFDH01000109.1| GENE 21 18782 - 19315 511 177 aa, chain - ## HITS:1 COG:no KEGG:BMQ_pBM70170 NR:ns ## KEGG: BMQ_pBM70170 # Name: not_defined # Def: hypothetical protein # Organism: B.megaterium_QM_B1551 # Pathway: not_defined # 1 162 3 167 178 67 28.0 2e-10 MTVLLMFGLVLVLIQIILVRRITFRPIPWFTRMAASARLESPYAYGGFLFIVNMIIFLVM TALVVLTIMMNVAFSLFLFAGAGVFISFMIWIQMSISREGTKKEKRIIGGIGSAFYWVLT VYLLLQIFLLPPSAPEQDPFMQFVGLLMGVVISLTAAVSCWVTVYLAKGKPVNPITR >gi|333604565|gb|AFDH01000109.1| GENE 22 19489 - 19953 468 154 aa, chain + ## HITS:1 COG:lin2960 KEGG:ns NR:ns ## COG: lin2960 COG1846 # Protein_GI_number: 16802018 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 11 147 3 139 140 80 35.0 1e-15 MTTEPILYKNGLNDSLGFLLGVAYRKMSNFLSQRLKEYDITPEQWSVLYRIYEQDGLIQK DIAARACKDKPTTTRILDSLEAKQFIRKQVGQGDRRSFHIYITDKGRSLIEETISIEQQT NRDAAAGLSQEQYDQLITFLHGIIDNLTLTSESE >gi|333604565|gb|AFDH01000109.1| GENE 23 19967 - 21268 1326 433 aa, chain + ## HITS:1 COG:ECs3121 KEGG:ns NR:ns ## COG: ECs3121 COG0477 # Protein_GI_number: 15832375 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli O157:H7 # 20 425 3 392 396 169 31.0 8e-42 MSKHPEQLELLHHPDAGKSEPLWTKSFIMLTFCYFLLFLCLQMLLSPFPTYAKDRFHSGD FTLSLLTSLFAISAIITRFVTAALMRRVHRNTLLFCGVAFAAVSTAAYSFAGSMSALLAL RVCFGIGFGMASTVMPTLVSQIIPRRRIGEGVGYFGLSSSLAMSVGPTIGLAMIGSYGFG PLTAMGTAAAALIVPLLLGSRSIPPQPAAAAVSPAGKAASGQEAGSSGGAAKRSGFNKKL LLPALLNALLSVTYGGLLSFIALYGKEVHLEQIGLFFLFNAITVLVVRPISGRLFDSKGH AAILIPGALILIASLLVLSVATTMPVLIVSALLYGLGFGALQPTTQAWMLRETPPEQHGT TNSLFYNSIDFGVAVGSMLLGLVASGTSYAVMYRYAAGVMVLFLLVYGVYLLTRRRNSGS SAVPAVSEMEISS >gi|333604565|gb|AFDH01000109.1| GENE 24 21408 - 21860 421 150 aa, chain - ## HITS:1 COG:PAE0810 KEGG:ns NR:ns ## COG: PAE0810 COG1051 # Protein_GI_number: 18312195 # Func_class: F Nucleotide transport and metabolism # Function: ADP-ribose pyrophosphatase # Organism: Pyrobaculum aerophilum # 39 129 3 90 105 66 37.0 1e-11 MRTPIFYGSVHVFLSRNGETLLLKRKNTGFADGKWSVVAGRIDGGEEVKAAAVREAKEEA GIDIRPGDLEITGIMHRKNTNSEWIDFFLRARSWQGEIGNMEPHKCEELRWFPEDALPAE MVPYVREALLNRQESLWFESFGWAGDPVQV >gi|333604565|gb|AFDH01000109.1| GENE 25 22161 - 22388 309 75 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_4065 NR:ns ## KEGG: GYMC10_4065 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 75 1 79 79 79 55.0 6e-14 MKTIIVFNNQKIPVFYTEASKKALSLLKIALEAKWNNGKRAVKTCLENLISIEIEGTEAI LHSRRESDTLALSLY >gi|333604565|gb|AFDH01000109.1| GENE 26 22495 - 22650 260 51 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLLSRDQKELILAVLKKENKRVLSGHKGPLLKKTIADFEQALRNEAINEKR >gi|333604565|gb|AFDH01000109.1| GENE 27 22894 - 24378 1707 494 aa, chain + ## HITS:1 COG:BH0539 KEGG:ns NR:ns ## COG: BH0539 COG1012 # Protein_GI_number: 15613102 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Bacillus halodurans # 8 494 11 498 498 770 73.0 0 MNELTLTVRPKIQRFLNGTKRLFIDGEFVDSVYGSTFTTPNPATGDILAVVSEATEEDID LAVKAARRAFDEGPWPGLSAAERSRLIYRLADLVEDNLEELAQLETLDNGKPIAETRAAD LPLAVEHLRYFAGWSTKIVGQTIPVSGGYFNYTRHEPVGVVGQIIPWNFPLLMAMWKLGA ALASGCTVVLKPAEQTPLSALYLAGLIQEAGFPPGVVNIVPGYGETAGQALVNHPQVDKI AFTGSTEVGRSIMRQAADRLKRVTLELGGKSPNIILPDADLSRAIPGALSGIMFNQGQVC CAGSRLFIQKKMFDNVVADLVLYSRKLKQGAGLSPDTQIGPLVSEEQQNRVLGYIERGLE EGAELLTGGTNPFEEGYFVAPTVFAGVQDSMTIAKEEIFGPVVTALPFEDLDDVIARAND TDYGLAAGLWTENVKNAHYIAGKLRAGTVWVNCYNVFDAASPFGGYKQSGIGREMGSYAL NNYCEVKSVWINMN >gi|333604565|gb|AFDH01000109.1| GENE 28 24566 - 25036 451 156 aa, chain + ## HITS:1 COG:no KEGG:BMD_3838 NR:ns ## KEGG: BMD_3838 # Name: not_defined # Def: hypothetical protein # Organism: B.megaterium_DSM319 # Pathway: not_defined # 1 145 1 145 160 120 40.0 2e-26 MKEIAVRIHDRTYEIASLLEPVNETLLARRPGADKWSVNEILGHLCDSALNNLPRFIVTR YAEQPAVFQPYKQNEWVAVQDYRHTPSKEIIVLWGSLNRQVARVIASVTPEQGDLLCKIG EHEPVTLRWLIEDYEEHMEHHLGQILRLKERLEGEI >gi|333604565|gb|AFDH01000109.1| GENE 29 25398 - 26312 1009 304 aa, chain - ## HITS:1 COG:MA0773 KEGG:ns NR:ns ## COG: MA0773 COG0604 # Protein_GI_number: 20089657 # Func_class: C Energy production and conversion; R General function prediction only # Function: NADPH:quinone reductase and related Zn-dependent oxidoreductases # Organism: Methanosarcina acetivorans str.C2A # 1 304 1 306 309 148 37.0 1e-35 MKAMGFTKFGPPEVLEPMEIAAPQAGEGEVRVRVKAAGVQPVDCAIRTGFRPQGVPVALP HVTGGEFAGIVDQTGSGVPAFAPGDEVLGFRMQYAYAEYVVVPQDQLVRKPDTMPWDAAG GLSGAGQTALTALEELAVGPGDTLLINGAAGGVGTVAVQAARAKGAAVIGTASPANHDYL RSIGAIPVTYGPGLAERVRALAPGGVNAALDAGGADGLLAAVELVPDRNRIATTVAFELA GELGVRWIRSRRSAQRLAELVELYTRGQLRIHIRRTFPLSQAAEAHREMEIGHGRGKIVL RLED >gi|333604565|gb|AFDH01000109.1| GENE 30 26487 - 27383 883 298 aa, chain + ## HITS:1 COG:BS_yybE KEGG:ns NR:ns ## COG: BS_yybE COG0583 # Protein_GI_number: 16081119 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus subtilis # 15 291 1 277 278 176 37.0 5e-44 MEILQLQYFRTVARLEHMTKAAEELHIAQPALSKTIARLEDDLGVPLFDRQGRKITLNAF GRAFLKKTEIALTALEEGRKEVTDLAGMEQGSISVASPILNRLSGPLGEFLALYPHVRLR LTQAPTEELAGMLESGEADFCFTAYPVGRPGIVEEPVLSEEIFLAVPPGHRLADRTGIAL SEAAGEPFIGYKKEHVFRKRDDALFRQAGMTPDFACEVNEPSAKAALVHAGLGVAFVGAC NRSEEPPTALMVRIPITDPVCLSSYQLAWHEKRYLSKAAQKFRDYIRHYFSAGTETEI >gi|333604565|gb|AFDH01000109.1| GENE 31 27650 - 28948 1512 432 aa, chain + ## HITS:1 COG:BH2030 KEGG:ns NR:ns ## COG: BH2030 COG2252 # Protein_GI_number: 15614593 # Func_class: R General function prediction only # Function: Permeases # Organism: Bacillus halodurans # 1 429 2 431 432 377 52.0 1e-104 MVRFLDRRFGLKTHGTTVRRELMAGLVSFVTSVYIIIVNSAILADAGIPVQAGMIATIAT SFVGCWLIGWWSNTPLVIVPGMGINALFTYTVVHTMGLSWQEALAAVFVSGLLFCLVAFT GLAGRISQSVPHTLKEAIGVGIGLFLTFIGLQKSGIVVPSASTFIALGDLGSPEAVVTLL TLALMAVLYVRGVNGSFLIAIVFGTAVAWLLGLVNPAAEGPGFGLRDAAAVFGALSFGGL WSLPFWIAAFSMAMVIVFENLGLIHSQTASFGRPDTYRRAFQAAAVSNAAAGLLGSSPAV SAVEGSAGIASGGRTGLTAVFTGVLFLGSYFAVPLLQAIPDSAIAPVLIILGSLMLGSIK AIPFEDFSEAFPAFLVIALIPLTYSIVDGIAFGFIAYPVVKLAAGKGRQVSATLYVIALL FLLYEILQVMNK >gi|333604565|gb|AFDH01000109.1| GENE 32 29085 - 29285 231 66 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MATTSLDALTTGMFVTSLLLILFIGSMVSMSIMRFFQKKKVQGTVYLVVGLAALVTFIVM ASGWSS >gi|333604565|gb|AFDH01000109.1| GENE 33 29419 - 29916 616 165 aa, chain + ## HITS:1 COG:no KEGG:BMB171_C1283 NR:ns ## KEGG: BMB171_C1283 # Name: not_defined # Def: cAMP-dependent protein kinase # Organism: B.thuringiensis_BMB171 # Pathway: not_defined # 1 164 1 164 170 219 65.0 4e-56 MILHKGEVLFRQGEQGPLFRIRSGLFKVVRLQENGEQFLFNILNPGELIPHHSLLTPKEY HGTAIALITSEVEVIPAAEWYAGLEENPLRYRDAALVLQDKLRAMQQRIDQLTALTPARK IELLGQWFARYVGDIPLGDVLTQEEIGQLVGLRRETVNRLLRKQR >gi|333604565|gb|AFDH01000109.1| GENE 34 29956 - 31188 1245 410 aa, chain - ## HITS:1 COG:BH1058_2 KEGG:ns NR:ns ## COG: BH1058_2 COG1018 # Protein_GI_number: 15613621 # Func_class: C Energy production and conversion # Function: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 # Organism: Bacillus halodurans # 151 409 1 254 257 234 47.0 3e-61 MLKPETIEIIKSTVPVLEVHGKAITTRFYEKLFESHPELLNLFNHGNQKQGRQQTALANA VYAAAVHIDRLHEIMPAVKGIAHKHRSLGVTPEQYPIVGENLLGAISEVLGDAATPEILG AWEEAYSVIAAAFIGVETEMADEALHQPGSWAGFRKFTVRRKTAESGNITSFYLVPEDGG PLAAFEPGQYVTVQMSIPGREHLVNRQYSLSDRPGQPYYRISVKKEAGTDTRVEGVASTY LHEAVREGDTLLLSAPAGDFTLNRSVDTPVVLLSAGVGLTPLMSMLRTIRAEQPARSVAF IHSAADGRLHAMKDAVKDEGTASAAETCLRTHICYTQPTEEDKAAGAFHSEGRLTAEKLK EIMAESGEHADYYICGPVSFMRDMIGYLQESGVPAASVHYEFFGPSLNLQ >gi|333604565|gb|AFDH01000109.1| GENE 35 31382 - 33013 1664 543 aa, chain + ## HITS:1 COG:BS_yngK KEGG:ns NR:ns ## COG: BS_yngK COG1649 # Protein_GI_number: 16078889 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 59 532 34 509 510 549 56.0 1e-156 MNKKHIAALIALAFTAALLVLLIGSLGGRKSLLAETLSAAGSKADSITQAGNQALSAPRQ LRAVWIATAWNIDWPSSQGLSAAKQQQEFIAMLDEAKNVGMNAVIVQVKPNADSLYPSEY GPWSDILTGRQGQSPGYDPLAFMVEEAHKRNLEFHAWFNPYRIGKTKDAGKLAADHPALR HPDWVAAYAGTQYYNPGIPEVRDFVVAGITEVVRKYDIDAVHLDDYFYPYPEKGKDFPDD SAYQKYGKSKLGSKPNWRRDNVNRLVEAIHAAIKKEKPYVKFGISPFGVWRNQNADPTGS ETTAGTTNYDTLFADTRAWINAGWVDYIAPQLYWNFGFKPAAYDKLADWWIKETEGKPVQ LYIGHAPFKIGQQDPPGWQNPDELPDQLKFNARSAGKISGSILFSLKDIRRNPLGFRDRL NTELYASPALVPPMPWLGSAAPQPPKALSAESTADGVRLDWHDGGGNPAYYAVYRTEGSG SEAARLIGTVRSGGSGPQTFTDRAAPAGKPLRYVVTALDRLHNESTTSRTASTDVPGRFA KAK >gi|333604565|gb|AFDH01000109.1| GENE 36 33137 - 33664 557 175 aa, chain - ## HITS:1 COG:BH0503 KEGG:ns NR:ns ## COG: BH0503 COG3981 # Protein_GI_number: 15613066 # Func_class: R General function prediction only # Function: Predicted acetyltransferase # Organism: Bacillus halodurans # 42 156 43 158 174 102 46.0 5e-22 MNEELRELNLEEGSDIFEMTREIGLGANGFVNSFYSETRDEFHNLLVKNYNMARAKQLPE GLVPQTVYWLYADGRPVGYGKMRHALNGQLKKRGGHIGYVIRPSERGKGYAKLLLQLLLR EAAGKGIHEALLTCNEDNAPSRRVIESCGGVLQDNIDGICRYHVPAGRVLGSTGT >gi|333604565|gb|AFDH01000109.1| GENE 37 33820 - 34173 205 117 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228999407|ref|ZP_04158986.1| ## NR: gi|228999407|ref|ZP_04158986.1| hypothetical protein bmyco0003_39620 [Bacillus mycoides Rock3-17] hypothetical protein bmyco0003_39620 [Bacillus mycoides Rock3-17] # 8 84 108 184 187 63 35.0 4e-09 MLGPSNHKKKWYLRNGFVLALCAITPPIGYIHVLVNRKHWERKEMLSYLVWATVFTSFWL LKFISKELQLVALILVLVFLYSGKKGKDRPYFLTPYIFTFETKLAFICCLLNIFGSI >gi|333604565|gb|AFDH01000109.1| GENE 38 34096 - 34803 490 235 aa, chain - ## HITS:1 COG:no KEGG:BBR47_09810 NR:ns ## KEGG: BBR47_09810 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 1 235 1 235 235 391 80.0 1e-107 MNFEMVMQELESLGKERTKKIYVSNGAHEPLFGVATGAMKPIAKKIKKNQPLAEELYNSG NYDAMYFAGVIADPKAMTAADFERWIDAAYFYMLSDYVVAVTLAETDIAQEVADKWIASG QELRMSAGWSCYCWLLGSRHDREFSENKLADMLEIVENTIHDSPERATYAMNNFIYTVGV SYLPLHDKAVETAKAVGPVEVKRDKTKSKFLDASENIQKAANKGQLGFKRKYVRC >gi|333604565|gb|AFDH01000109.1| GENE 39 34999 - 35169 120 56 aa, chain - ## HITS:1 COG:no KEGG:BBR47_39610 NR:ns ## KEGG: BBR47_39610 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 1 56 62 117 117 70 53.0 2e-11 MVHTNSMPYMEGLQIDYEERGMIGGFTLNNPNAKASCGCGASFRMENYRGEIKKCD >gi|333604565|gb|AFDH01000109.1| GENE 40 35378 - 36742 469 454 aa, chain - ## HITS:1 COG:DR2098 KEGG:ns NR:ns ## COG: DR2098 COG0477 # Protein_GI_number: 15807092 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Deinococcus radiodurans # 15 448 27 455 462 135 29.0 1e-31 MSSSSQSIFSPRYFALSIGIILSVMAVGFEGLSVTTIAPSIAGDLNGLDLFGWIFSTYLL AQIIGTLVVGRIIDRQGPAAPFTFALILFVVGLIAAATAGDMYTMIGARAMQGLGAGAMM TCVYTAISLSYPDELRAKILGAFGTAYVLPSMLGPYVAGLIADQWSWRFVFWGILPILVV SALLSLPAFRKLKTQRTQGNNGASATWLALLLTIGTGIFLVGLSMLPILTGFVLVMIGLA LMGYPLCKLLPKGTLAFRRGMPAILATRGLFFAAYASTQNFLVLALIDVKGITPSQAGLI VASAALSWCLIAYLQGRWDSADQGRGRHTRIILGVVLLAIGIALVFWIPVVTVAVAVIGQ IIAGIGIGLAHPISGVVAFSQTGNGDVGETSANLQFADSFTPGVVIGIGGSILVVCQAAG MSLQSGLIVTMGFHLLLIVTSLFASTRIRPANPK >gi|333604565|gb|AFDH01000109.1| GENE 41 36999 - 37568 270 189 aa, chain + ## HITS:1 COG:YPO4077 KEGG:ns NR:ns ## COG: YPO4077 COG2345 # Protein_GI_number: 16124189 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Yersinia pestis # 10 184 39 211 214 150 41.0 1e-36 MALSSNFSLSGMAIRQHLNALKEEGFVTYEEEARPMGRPTKLWRLTQEADRFFPSGYSEL SVSLIHSMKEAFGNEGLDKLLAVRNKKLQEQYLQYIGGASGVREKLDKLAEIRTREGYMA EVKDQGDGSFLFIEKHCPICEAAVACTGLCKNELHLFHTILGKHVLVERVEYILAGGRNC VYRVRENNL >gi|333604565|gb|AFDH01000109.1| GENE 42 37675 - 39153 1294 492 aa, chain - ## HITS:1 COG:CAC0528 KEGG:ns NR:ns ## COG: CAC0528 COG0488 # Protein_GI_number: 15893818 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Clostridium acetobutylicum # 1 492 1 492 492 671 68.0 0 MSLIRVSNLTFAYDGSYDNIFEEVSFQIDTDWKLGFTGRNGRGKTTFLNLLQGKYEYSGT ISAQVQFDYFPYPVDNKENLTLDVIRDIFPDYVDWELLRELSLLKVSEDVLDRPFDSLSN GEQTKVMLAALFLKENSFLLIDEPTNHLDMEARKLVSSYLRNKSGYILVSHDRAFLDHCV DHILSINKTNIEIRKGNFSDWWRNKEMQDEFELAENEKLKKDIKRLSEAAKRTSGWSHEV EKTKNGTRNSGSKVDKGYVGHKAAKMMKRSKNIEQRQQSAIEDRSHLLKNIESSESLKIS QLVYHKSQLAELDHVSIQYGDKTVCGDIGFTVEQGDRIALSGKNGSGKSSILKLILGEDI DYTGTFRKGSQLKISYVSQDTAHLRGSLSDYARENGVDESLFKSILRKLDFARVQFEKDI SSYSGGQKKKVLIAKSLCEHVHLHIWDEPLNFIDVISRMQIEELLLEHKPTLLFVEHDRE FCSNIATKVVEL >gi|333604565|gb|AFDH01000109.1| GENE 43 39296 - 39409 57 37 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MQIINKTSEKLRSLFYHYARKKVYIILFNSLSKLLTS >gi|333604565|gb|AFDH01000109.1| GENE 44 39500 - 40144 260 214 aa, chain - ## HITS:1 COG:MA0649 KEGG:ns NR:ns ## COG: MA0649 COG1262 # Protein_GI_number: 20089536 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Methanosarcina acetivorans str.C2A # 12 212 105 305 307 112 33.0 6e-25 MVNIPGGEIELRDDRVQTKWKAEIRPFLLARYAVTEGLYKAVTTNSPYSPDENLKPAVNI SWEEAVSFCNLFSRQAGLKECYSISGDGQTIRCDWEADGYRLPTEAEWQHACKAGTAGYR YGDLDEIAWYNENSGGGAQEVGTKEPNVWGLYDMLGNVWEWCWDVYDEKVYGSYRIFRGG SWAEEARGCGATCRRRSHPTFGIDDLGFRLARSV >gi|333604565|gb|AFDH01000109.1| GENE 45 40495 - 40908 407 137 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVPLKIRLAYNAIFLGTFGVPLYFVYQFIFFDSPHPGQAIYFVLISLMSMNIRLREKLLY VPPKESRKKKMFVYVLGLSMLTGVFAYYEGWQTALQKGPLGMLLIMGGLYAGHLLLEKLI AARFRADNAPEESSLSS >gi|333604565|gb|AFDH01000109.1| GENE 46 40909 - 41124 298 71 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MDSGASATAAAVNPFVLIQMLMMAGYAVLLVLGIVLLIVLIRLALKANKALDTYMASKPN TAVLPPETKES >gi|333604565|gb|AFDH01000109.1| GENE 47 41152 - 41610 295 152 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKVPVSVFVKPVDGPGLLFMRLILVCISLTSFIATLYGGNIQQAYVFGGITLALAVLFAI QASRALRPRSPILLEPQSLVAEGRRVNTHEIEEIRRWGKFGRDVIGIKLQGRFDVPAHLT FRFRDEEGMEALSSWAEARSIAFTRKSFVRWI >gi|333604565|gb|AFDH01000109.1| GENE 48 41678 - 42646 778 322 aa, chain - ## HITS:1 COG:BH0411 KEGG:ns NR:ns ## COG: BH0411 COG2378 # Protein_GI_number: 15612974 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Bacillus halodurans # 1 314 1 317 331 209 35.0 5e-54 MRADRLLSLLLLLQNHGKMSSRELAEKLEVSERTIFRDMEALSAAGIPVYAERGSGGGWS LTEGYRTRLTGMKAEEIATLLIANTSALLSDLGMSSEYDSAFQKLLAASPASLRQETERV RQRIHIDGAGWHRSAEQLPHLPLAQQAVWEERKLRIRYRRDDRIAERIIHPLGLVAKGSI WYAVAETEGEMRTYRISRLLDAELSDEHFTRPTSFDLAEYWEQSLKEFAAKLPRYPAKIK IRETELHRFSRERFAKVRHPSEADNGWVEADTEFNTLESAIGILLGYGSSVYVLAPEELR SGLVAVTRGILELYDNKANKEL >gi|333604565|gb|AFDH01000109.1| GENE 49 42887 - 43783 1088 298 aa, chain + ## HITS:1 COG:BH0410 KEGG:ns NR:ns ## COG: BH0410 COG1028 # Protein_GI_number: 15612973 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Bacillus halodurans # 4 298 2 298 302 284 51.0 1e-76 MKSKSLEGTIAVVAGATRGVGRGIAAMLGEAGATVYCTGRSVRGNLSNMGRSETIEETAE LVTAKGGRGIVVRADHTAEEDVKALFEQVKLEQNGRLDLLVNDVWGGDPLTEWGKTFWEH SLPDGLLIQERAVRSHMLTSYYGAPLLASRKQGMILEITDGFDYRYRGNLYYSLAKISAI HLAEAMAADLRPHGVTAAAVTPGFLRSEAMLDHFGVKEENWRDAIAQEPHYSESETPFYI GRGIAALAADPDKFAKSGKVLTSWGLSDEYGFSDVDGRRPHWGRHAAEHGLYDERQDA >gi|333604565|gb|AFDH01000109.1| GENE 50 43863 - 44798 776 311 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148988856|ref|ZP_01820271.1| 50S ribosomal protein L9 [Streptococcus pneumoniae SP6-BS73] # 3 311 2 307 308 303 51 3e-81 MANIATNLTQLIGNTPLLELVNYAKKQQVEARLLAKLEYFNPAGSVKDRIGYAMIKDAEE KGLLRPDSVIIEPTSGNTGVGLAFAAAALGYKLIITLPESFSIERRKLLAALGAELVLTP AEEGMSGAIRRAEELAAELPGAFVPQQFENPANPDVHRRTTAEEIWRDTDGAVDIFVAGV GTGGTVSGVGQALKAKNPAVNIVAVEPADSPVLSGGKRGMHKIQGIGAGFVPGNFDSSVV DEILTVKNEEALTAARLLARNEGLLVGISSGAAVHAASVLAERPENKGKTIVVLLPDTGE RYLSTDLFQEE >gi|333604565|gb|AFDH01000109.1| GENE 51 44903 - 45151 232 82 aa, chain - ## HITS:1 COG:SMc01158 KEGG:ns NR:ns ## COG: SMc01158 COG0666 # Protein_GI_number: 15964114 # Func_class: R General function prediction only # Function: FOG: Ankyrin repeat # Organism: Sinorhizobium meliloti # 10 81 125 196 201 80 62.0 8e-16 MRELLTRTQVDVNHVNRLGWTALLEAVILGDGGEVHQSIIRLLLEHGADVNLPDGDGVTA YRHAVSRNFTAIAAMLEAAGGR >gi|333604565|gb|AFDH01000109.1| GENE 52 45115 - 45675 357 186 aa, chain - ## HITS:1 COG:PA2498 KEGG:ns NR:ns ## COG: PA2498 COG0666 # Protein_GI_number: 15597694 # Func_class: R General function prediction only # Function: FOG: Ankyrin repeat # Organism: Pseudomonas aeruginosa # 65 166 19 120 210 88 48.0 6e-18 MFKQVNSFIPVLIVPVLISAALTGCRTAGSPDPGTAQTPVYQESQGLETEGIGKMKMPGE KNTQLLEAAAKGDAEKVRTLIGEGAGVNAQDSNGNTPVMAAAINRHPDAVRVLLEAGADV NIRNDRSDNLFLYAGAEGDMELLRLAISAGADPALTNRYGGRRSFPLRNGGMRILCGSCS PGPKWT >gi|333604565|gb|AFDH01000109.1| GENE 53 45740 - 47053 1380 437 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_2695 NR:ns ## KEGG: GYMC10_2695 # Name: not_defined # Def: S-layer domain protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 64 423 125 485 493 345 51.0 3e-93 MKKTLLQLLTVSAVAASVLLPLNAAPAAAQSAKSPADSRITNLAPAPGMNGNDFAAGHVS DRGRLMLTQQELVSRIAQLTEKKPLVIQQWLKNYEPDARVRNGEAARLGFKAIAHIPSEH AAVTDIKVLSAATLEITFDSPLTAADVNLDKAKANFQFDNGMTIRNVPQLKNGARSTYVV PVTVQQPGKTYSLTYKGKAAGKFTGSAHTVKLAAARQVTADTFELESLRKDGIVDYGYVV ESYFGTRGGLEMYLNDRNASGGKSYDIISSLRDMSVTLTPEGGQPIRAAYVPYTQATDDR QAPKFRLPAGQTLTPGVKYTVTADWATVTEASFTARAAAPLVIASAKAVSPSSVDITLAA DPRDELFSGRSVELTDEDGKKLTAVYKVTSRKGAVGTFELAAGSQLSPGKAYTVTASGAW ATQQGKISLNTDALKSS >gi|333604565|gb|AFDH01000109.1| GENE 54 47087 - 47179 56 30 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MISSYRTKLNGPETNSKLFLNSSSRQPENR >gi|333604565|gb|AFDH01000109.1| GENE 55 47161 - 47850 673 229 aa, chain - ## HITS:1 COG:CAC0321 KEGG:ns NR:ns ## COG: CAC0321 COG0745 # Protein_GI_number: 15893613 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Clostridium acetobutylicum # 1 229 1 230 230 296 63.0 1e-80 MKKILIIEDEATIAQLHRDYLNLHGFQVEISTRGDDGLHKALTEGFDLIVLDLMLPGKDG FEVCRQIRTAMEVPILIVSARKDEFDKIRGLGMGADDYMTKPFSPGELVARVKAHLTRYE RLVGLKETAPGEIRIRELAIEPESRRVYIRGKEVPLPAREFDLLLFLARHPNRVFRKEEI FEKIWGMDSMGDIATVTVHVRRIREKIEADPSAPEYIETIWGVGYRFSG >gi|333604565|gb|AFDH01000109.1| GENE 56 47828 - 49339 1263 503 aa, chain - ## HITS:1 COG:CAC0317 KEGG:ns NR:ns ## COG: CAC0317 COG0642 # Protein_GI_number: 15893609 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Clostridium acetobutylicum # 144 468 154 479 498 293 42.0 5e-79 MSIRARLLASFTLLLVATVLLFTAAAFIVTTAVTGDVRGISSFYNVHLRLKPLTPEQETL FLDLKHLAKTKPEELLVPDIYKEYDFQLKVAKASLLIRKGSGSAFISPALAEIQPEAVLP PYEAENVHMRSTLQTGKNFFGYAKYDFRFADGEQGRLFVFREVSPFAVLMSKLLPLFVSV LFLLLVGSNIYIYLFLTRRMIRPLNLLRASAARIQRGDLRFRIQPGDDEIGQVSAAFEEM RGKLQESEELQKQYESNRKELIANISHDLKTPLSAIRGYVEGIRDGVADTPDKLESYVDI IYSKAEEMDHLIEELFLYSRLDLNKVPFALQEVDLTRFVADVVYELRFELEKEGVGLETG GHSPGPLHVRIDPMHMKRVVNNVVGNSLKFMERPQKTIAFVLRRDGAAAVLEITDTGPGI DPAALPHVFDRFYRAETSRNRESGGQGLGLAIAKQIVDNHGGSICAENASEGASTRHPQT GTRIVIRLPLLKGNHTDEKNSDH >gi|333604565|gb|AFDH01000109.1| GENE 57 49621 - 51516 1665 631 aa, chain + ## HITS:1 COG:mll3725_2 KEGG:ns NR:ns ## COG: mll3725_2 COG0642 # Protein_GI_number: 13473203 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Mesorhizobium loti # 306 615 1 310 328 201 38.0 2e-51 MQHEAGNYDALLVILSILMSMTTSCTALDMADRLLRGDRSFRKMLLTAVVTGLGVWSMHF LGMLALKLPFEVHYHLPLLTVSLMLPILAVFLSLLILAPDRKLGKRFFTAVGLLAGLAFV SMHFSGILAMKIPAVYHQTPGSLIVSIALALLASYLMLALAIYARELPAYNLLSPWKTGG GLLVGGLIAGMHYTAMAGASFTPSDHELSLTSSSIIGNTLLTVLVGCTVFCVLFWVVLIL YRDRQNVLTASRFNEQRYTALFEHSPDLVVCMDPVKKMIVSANPSVLANTGYTQAELMVL SLHDLLYSRDEKLKVMTALAEAAQGKPSKIELSIRTKQGARKYHRTSVFPLEHNRQLLVY FVSKDITDRIVVEQELRKAKDLAESAVKTKSEFLDTMSHEIRTPLTGIIGINQLLAESAE SADDQELLALQAKSSQALLRVINDILELSKMEAGRISLHQEPFQLRELIQECLDFFAIII RNKELAMDTSIDPGVPETLVGDYGRVRQILVNLIGNAVKFTDQGLISLEVRLSERGDEGC LLEFAVSDTGIGIDCSKLDRLFQPFTQLDGASNRKYEGTGLGLAICRKLVTLMQGRIWAV PGRSVGTEFRFTIRLRELRHFMDEGDGQEAG >gi|333604565|gb|AFDH01000109.1| GENE 58 51585 - 52337 580 250 aa, chain - ## HITS:1 COG:CAC2416_1 KEGG:ns NR:ns ## COG: CAC2416_1 COG1376 # Protein_GI_number: 15895682 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 69 170 53 153 153 125 57.0 9e-29 MNAGAGINMNKRQTFLKLKGIALTAVCLLNVLLPGNAAAEGAPVPGGGTEPSIPIVADQG PYSIEVYPLRHKLVVFKDKKHFKTYPVAVGNLSTPTPVGEYQVIYKGKDWGPSFGPRWLG LNVPWGAYGIHGTNKPYSIGRHLSHGCIRMRNRDVEELYDLIPVGTKVTIAGHVLGDPGH EPRKLAQGAIGADVQLIQNRLTSAGYYSGVCNGKFLASTAEAVRRFQRDHGLRADGVVSV SVYEKLGLME >gi|333604565|gb|AFDH01000109.1| GENE 59 52342 - 53523 741 393 aa, chain - ## HITS:1 COG:no KEGG:BpOF4_18420 NR:ns ## KEGG: BpOF4_18420 # Name: not_defined # Def: hypothetical protein # Organism: B.pseudofirmus # Pathway: not_defined # 7 373 3 358 362 234 35.0 5e-60 MGKGKRRVFLLLAVWGILLRPEAAYMQQAVEAGDRGSVVLSVQTTPDAVYRSETGVTLSV RKLFGQSVRRKAESFPYTDTFMKVREAGGERIYPVSAMGEFYDSLGHEVIRPGEPLRREL VKQIKVLHRKHYGELISWNDAQKAVPRQAKFEVLDLETGRSFRVQRRAGRQHADVQPLTK KDTAVMKSIYGGKWSWNRRAVLVRYDGHSYAASMNGMPHGGDGIPENGFSGHSCIHFAGS TTHKSRSKDTAHQFMAHRAAGKASGFVGKASPQELADLVVTAFDQHDDAMLELLGRPHNR ERLEELKKDSRFFVSVRRLTEWKPEEARKAEQEYGFELPVELAFEEAGKRPRKAICRFAF TRASLYDPWELTQFEYPEPGRPGKRTEDGRKSR >gi|333604565|gb|AFDH01000109.1| GENE 60 53839 - 56397 1870 852 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_3272 NR:ns ## KEGG: GYMC10_3272 # Name: not_defined # Def: alpha-L-fucosidase (EC:3.2.1.51) # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 4 521 11 529 755 521 51.0 1e-146 MSANKLWYIKPAQAWTEALPVGNGRLGAMIFGRVEEELISLNEESLWYGGPKDRTNPEAA AALLEIRRLLLEGRVTEAQELAHMGLTPIPKYAGPYQPLGDLRIWFAEHEPDAGTYRREL DLATGLCRVEYAWQGASCTRELFASAPAGVLACRLTTAHPEGLTFRFHLGRRPFDEGAAP DGPHAVLMQGRCGPDGVRYAALASVSPEGGTVRTIGDFVHVAGAAEATIYVAAQTSFRHE DPAAACRRQVEEARRKGYEAVKAEHGADYMPLFARMSLELGTPGADIRLLPTDERLDRVR EGGEDPELLALFFQYGRYLLLASSRPGTLPANLQGIWNADYQPPWECNYTLNINLQMNYW PAEVCNLRECHEPLFDFIDRLVANGRETARKLYGCRGFVAHHNSNLWAESGINGMLPRAA VWPMGGVWLALHLWEHYRFGGDRHFLDRRAYPVMKEAALFLLDYMTEDGKGGLLTGPSVS PENKYVLPGGKSGYLCMAPAMDIQLARTLFGAVREAAAVLACERGAGGADQPEPGRIDGG ACGPAAFPGPSAGTAPYAGEREAPGAAQPEPPPSGSAEGPAGSAEAGVIGAKAPSGGPAA VRGYAALPAEAEWLERLTAAESRLPQPAAGRHGQLLEWLGDEEEADPGHRHISHLFGLFP GELISPVRTPALAEAARVTLERRLAGGSGHTGWSRVWIAHYWARLREGDEAHRHLTALLR HAADPNLFTEHPPFQIDGNLGGTSAAAEMLLQSQEGMLDLLPALPSAWPSGRVKGLRARG GYEAGLEWERGLLTAGRVTASVAGTLRIGYKLPFTTCLDGKKAAGKSGFSEPCGLYVMDI EHKAHAVVEIRL >gi|333604565|gb|AFDH01000109.1| GENE 61 56701 - 58629 1788 642 aa, chain - ## HITS:1 COG:BH3447 KEGG:ns NR:ns ## COG: BH3447 COG2972 # Protein_GI_number: 15616009 # Func_class: T Signal transduction mechanisms # Function: Predicted signal transduction protein with a C-terminal ATPase domain # Organism: Bacillus halodurans # 47 606 53 592 602 164 23.0 7e-40 MIKWNLSRKIFLYLLAIILITLTSVGIFTYKKASDELDKQNRLHMNQILTNALHHTDVYV KSYDRLTISLLTNRDIKKFVDLPPVPEPYDYYKFWSTIRETALQPIFIRNPEIVSMYAIS FAGNGIYGYSNDQAEGTYPREQTLSQMERLKSVTEPDGTLSITTDSILPAMNGSVIRLSR QIKGLQSADYKGILAVEIRSNDLSMLWKGIDLGEGGYFFIVNDKGEMIYQPSKDGIGPQA LPELLPRIVRSGETGSFEHEGPDGEARLYMSRKSSYSGWNLVVSMPLSELKKPVTAIRTT TILIGLFTLAIAVALAYRFGRSITRPILVLIQGMRQTEQGKWSTVPLPNRRDEITELMQR YNLMVGRLSELVEQVYEGELKQQKTQLERQQAEFQALQLQINPHFLYNTLETIVCYAVVQ DSEEISEIVKSMAYMLRYSVQTNLEEITVANELNHVLNYMLILKHRHDREFELDVAVPPQ FLLKKMVRLTLQPLIENVFQHAFPDGLEDHHWIRIDAGEESGRFWISVEDNGTGMTWETL ENLQATLQTQRLTDERDPAALEESGRGGIGVLNVHRRIQLVFGAEFGLRVESEAGIGTKM TMIMPVSKPANESPDESRCELPEPRSGGRYEPREKEGTGRTE >gi|333604565|gb|AFDH01000109.1| GENE 62 58634 - 59653 1073 339 aa, chain - ## HITS:1 COG:BH3679 KEGG:ns NR:ns ## COG: BH3679 COG4753 # Protein_GI_number: 15616241 # Func_class: T Signal transduction mechanisms # Function: Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain # Organism: Bacillus halodurans # 3 115 6 118 257 97 46.0 5e-20 MHLLIVDDEPIIRKGLVKMAELYPFEFAGIHTAASGVAALEIIREHEIDLVFTDIRMPKM DGLELCRIIHEQYSHIPCIVISGFGDFSYAQKCLFYGVKHYLLKPVTAPDLHEVLADFMK NRVKGFVALSDCVDVIEQMEQLVWNLEEDRLRTLIGEWRQNCLSSGMNMLQLRQLIKECM ALLLKRLQARGLPVKNEWEDKRCVSKEQIFEQMQARLEDIMEKLLQQRSGTYKNLLDEVK TYIDTHLAEEITLDEVAEMAGFTPTYFSSMFKKMTNETFVKYRIKKRMEKAQQLLAIPHI RIVDVAAKVGYEDYPHFTKMFKKTTGYSPSEYRQQLGIK >gi|333604565|gb|AFDH01000109.1| GENE 63 59789 - 61339 1880 516 aa, chain - ## HITS:1 COG:BS_ytcQ KEGG:ns NR:ns ## COG: BS_ytcQ COG1653 # Protein_GI_number: 16080068 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Bacillus subtilis # 16 389 9 380 440 118 28.0 3e-26 MKKGLGVLLAAVLTTGTLAGCNSKEPAKEGAAGAGPVKFSVSFSTGGNAYLESASDINKD KWVLELEKRTNTDLDLKPLSHKEFDQKMSLMFAGNDIPDVVSNLRGGPTTSSMSGSVEAG VFMPLDDLLKENAPNLMKLVPKEAWEETSYDGKIYGIPGWLTNPSRRATFIRTDLLEKAS LKQPVTVEEYLDVLRAFKKMGVENPYQIREQFKYADTFLGAYDVMPYQFELMNGEVVPKF FDVDNMTKALQTYKTMYEEGLIPKDFATVSQTDYNKNIAAGKSGIWSANGEALLNFRGKI KDAVKDGKVDIVPSPKGPEGKGGHGVYGYISTAKYINSKVDKEKAKKIIQFFDWMSTEEA EEFFTFGIEGETYTKENGKINYKQPKTKEEIDEANYRQTTLWMVHDLTYNKKLSELTEDG KDMVEAFDNVLSKEGVGGITFTTSLASFTKYPDLASGGDTGPKFILDQMIQMIYGKRPIS DWPKVIEEYKAKGGKEIIKEATERYNKKEGVVDRAR >gi|333604565|gb|AFDH01000109.1| GENE 64 61453 - 62325 964 290 aa, chain - ## HITS:1 COG:BS_lplC KEGG:ns NR:ns ## COG: BS_lplC COG0395 # Protein_GI_number: 16077779 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Bacillus subtilis # 2 289 7 294 295 241 46.0 9e-64 MIKESRGERSFQGFNYVLLTMVGLCMILPIVHVLAKSFSSELALNQGRVSVFPVEFTLSN FAFVLSDSSVWQGFLVSVFVTVVGTFINLIATTSLAYPLSRPEYIGRRYLLLMVLVTFIF SAPLIPNYLLIKNLGLLDTVWSLIIPGMISAYNLFIMRSFFSGLPGELVDSGRIDGCGEM RLIWSIVLPLSKPVMATMGLFYAVAHWNSYSNALYYINNRNLFPLQVRLREIVITDNFGE MTSTFENTLNISPEGIKMAVIVVATVPILLIYPFLQKYFIKGMLIGSIKS >gi|333604565|gb|AFDH01000109.1| GENE 65 62342 - 63292 1274 316 aa, chain - ## HITS:1 COG:BH1065 KEGG:ns NR:ns ## COG: BH1065 COG4209 # Protein_GI_number: 15613628 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type polysaccharide transport system, permease component # Organism: Bacillus halodurans # 22 309 23 310 317 284 50.0 1e-76 MASKIQPSDKVRYVQRHEVGSNLRKYKALYLLSIPGILYFIVFKYVPLMGSVMAFQNYNL FKGITGSPWVGLDNFIRMFEYDEFLNIFTNTLLIGLYDIVIAFPVPIILALLLNEVRKMV YKRILQTVVYMPHFLSWVIIGGIAVGILSPTTGIVNTMLGWFGMEPVYFLGEDSYIRSIL IGSGVWKDAGWGTIIYLAALAGVNPELYEAAKIDGASRWKQTTSITIPTIMPTIAIMFLL HIGHFLDFGFERVYVFLNSLNSNSGEILDTYIYRVGLLGKQYSYTTAIGLFKSLIGLVLI MIGNRLSKKATGESLY >gi|333604565|gb|AFDH01000109.1| GENE 66 63462 - 63986 665 174 aa, chain - ## HITS:1 COG:lin0495 KEGG:ns NR:ns ## COG: lin0495 COG2755 # Protein_GI_number: 16799570 # Func_class: E Amino acid transport and metabolism # Function: Lysophospholipase L1 and related esterases # Organism: Listeria innocua # 9 168 4 160 197 155 51.0 5e-38 MLIRKNDVVLFQGDSITDAKREPGHELGRGYAWMAAAQFGRMYPELGVTFLNRGISGNRV GDLQARWEADCLELKPGVISIYIGINDTWRRYDRSDPTTAEAFAAGYRDILDRTAESLPG VKLMLVEPFLLPVPEDRRHWREDLDPKIHGVRDLAREYGAAYVPLDGLFAQASA >gi|333604565|gb|AFDH01000109.1| GENE 67 63980 - 65002 918 340 aa, chain - ## HITS:1 COG:no KEGG:Cphy_0770 NR:ns ## KEGG: Cphy_0770 # Name: not_defined # Def: hypothetical protein # Organism: C.phytofermentans # Pathway: not_defined # 6 334 13 346 351 403 58.0 1e-111 MFSFKPAPVGGGFRMEGYWVWCGSAVKGEDGRYHLFASRWPDSLPMHPGWLVMSEVVRAV SDTPEGPYTYAETVLPARGAEYWDGRSTHNPQLVRIGDTYVLYYMGSTHPFADPEPGEPL GLEDPVTIVARSNKRIGIATATRPEGPWLRRDEPVLTVRPGRFDSFLTSNPAPCVLEDGS VLLVYKARKYEGFRHGEMTIGAAKAPHFEGPYTRLAEGPLFPPDFNIEDPFVWKTEHGFS MIAKDMTGRLCGEKYGGIHAFSPDGVTWSLCDPPKAYSRTFLWDDGAIRQAGNLERPFLL IEGGVPTHLFAAASDGTRGFHDCTKTWNLVIPLKEGPPSC >gi|333604565|gb|AFDH01000109.1| GENE 68 64989 - 66827 1525 612 aa, chain - ## HITS:1 COG:TM0306 KEGG:ns NR:ns ## COG: TM0306 COG3669 # Protein_GI_number: 15643075 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-L-fucosidase # Organism: Thermotoga maritima # 42 455 23 445 449 119 26.0 2e-26 MRENDPLMDGAEAEARRSRPPGNPAGEMWASGDERSDARLAWWREARFGMFVHWGPYSLL GGRWKGEEVQAAYAEHIQLRGRIPVREYEKVAAAMDLSGFHADEWVAAAKQAGMKYMIVT AKHHDGYAMYDSRASGYNIVRLGPSGRDPIRELSEACGRGGITFCLYYSHAMDWHHPDSQ GNTLDYTDNIGAWDSLESWTGDEAKSRRYDRYLREKAFPQIRELLTNYGPVGILWFDCGH KITDEQGREFAELVRSIQPGCLINKRIRSDEFADYGNPGDNQLSVRVTRPDWESIVTLND SWGFRHADRNWKTPEELIRILVETASRGGNTVFNVGPEGSGRIDEPSRRLLEEAGRWMAV HHASIRGTEGSPIGRPEWGCCTANRQERKLFLHILRRPPGSRLIVPGIASPVSAIRWLHD PEAAALRFRWLNGLDLLVELPGQLPDNASSVLVLQYEGELAADPHKRLMEEGATTFPAFD GEAAGERLRYDTGKKGRDNVTDWSLAGDSLSWTFRAAEPGRYRVCLSYAAEPGVSGGAYA VSCADQVLRREVVPTEGPYDFAVREIGELAIPGPGTFTLTVQAENIRGGYLMNLRQVVMK ALTEEEKPDVQL >gi|333604565|gb|AFDH01000109.1| GENE 69 66868 - 67185 493 105 aa, chain - ## HITS:1 COG:BH0496 KEGG:ns NR:ns ## COG: BH0496 COG1917 # Protein_GI_number: 15613059 # Func_class: S Function unknown # Function: Uncharacterized conserved protein, contains double-stranded beta-helix domain # Organism: Bacillus halodurans # 3 103 2 102 108 130 62.0 5e-31 MSNINVWEDAEPGVKRKIMQPGESLMLMEVHFEPDAEGYEHAHPHEQLSYCMKGRMEFTI DGVKKVIEAGESICIPPHAKHGAKALEASILLDCFTPVREDLVKR >gi|333604565|gb|AFDH01000109.1| GENE 70 67282 - 69585 2159 767 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_3685 NR:ns ## KEGG: GYMC10_3685 # Name: not_defined # Def: heparinase II/III family protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 3 767 2 789 789 909 55.0 0 MSKSLYQPRSGVLTIQYEPDAQTKVIENPPRFTWIPARLEKDCYVLEISERDDFPSGLSR TYAPVPYNFFTPEKTFAPGTYYWRYALYENDKRTSEWSVARSFSVPENLPETPLLAKGER FKESGCARPRLWLQGEEGIARYREKIAADPEGTGWKLFYELSVLPWAEREPHEEPEPYPG NKRTVELWRQSYIACQEMLYAIRHLSIAGKVLDDSRLLGRAKAWLLAAASWDPEGPTGRD YNDEAAFRMAGALAWGYDWLHGELDAEERERVKRSLAARTRQVAVHAIRRSKIHQVPYDS HAVRSLSSVLTPCCISLLHEEPEAEEWLHYTLEYFWTLYTPWGGEDGGWAEGPHYWTTGM AALLEAIEWIRGYTRLNLFDRPFFRKTGDFPLYVYNPNASTRTTFGDNSSLGGKFGVKTG YNMRHLAGVTGNGRYQWYYERIKEMDPEAAKQFHNHGWWDFRFDELVYRQAYPQIQAEAP SDTEELKWFRDVGWVAMHHRMDDQGEQIMLLTKASKYGSVSHSHADQGAFYIHAFGEALA VETGYYVAFNSTMHRNWRRQTVSKNSLLIDGAGQYAGTDKSLNMAASGTVAEAKRDKNAS YVKMDVTAAYLEQVPYAKRVEREIYFVDNSYFVVVDSVDLNCPGRIEWLYHALYEMDLQE QSFRVTGKTASLEGRFVFCSSGELTLSQSNEFSGVDEKEIEGLSRQWHLKAESFPAASHR LVTLLVPKKPGEEDRYVSYFMDDQGFVFSLYFTDNGKTRKIDVQKAF >gi|333604565|gb|AFDH01000109.1| GENE 71 69988 - 70764 596 258 aa, chain + ## HITS:1 COG:no KEGG:PPSC2_c2514 NR:ns ## KEGG: PPSC2_c2514 # Name: not_defined # Def: regulatory protein TetR # Organism: P.polymyxa_SC2 # Pathway: not_defined # 1 258 1 248 248 356 84.0 5e-97 MTPRTKEQNEEIRLRRLAQIRKAAADVFLNKGPLLEIRDVAVQAGLGYGTVYHYYSNKGD LLHDLLWDALERAGGWLEAPLEAPLEAPLALLKVPPEVPRASASAEAPVGGHFGLAAAAD TGNPAAADSRSGSRETAAAAELGPAAAGVRLLQLWAEDHALYLLYKLAGEGFASLPEARS APLSAAFRREVLAPFAALLETGRAAGGAAASGANAAEPPYRLLRAEMLLAALVGCASLSL RRGKLHEEARDIARFLNL >gi|333604565|gb|AFDH01000109.1| GENE 72 70791 - 71537 699 248 aa, chain + ## HITS:1 COG:lin1821 KEGG:ns NR:ns ## COG: lin1821 COG0024 # Protein_GI_number: 16800888 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionine aminopeptidase # Organism: Listeria innocua # 1 248 1 248 252 253 49.0 3e-67 MIILKSPREIEEMKPASQIIADCYREVSKLIEPGITTREINDFVARHITKLGGKQFTKGY NGFPAETCTSVNDVVAHGIPSNRALMDGDLLKLDIVVEYGGWFGDSCHCYAVGNIRPEAQ KLMKVTKECLDLGIARAIPGGRLGDITSAIQRHAEANGFSVVRDLLAHGIGRSLHEEPSY EHIGVAGKGIRLKEGMVFTIEPMLNEGTFRITIDDDQWTARTADGKLSAQYEHTIAITPD GPLVLTAQ >gi|333604565|gb|AFDH01000109.1| GENE 73 71960 - 72427 -55 155 aa, chain - ## HITS:1 COG:no KEGG:PPSC2_c1583 NR:ns ## KEGG: PPSC2_c1583 # Name: not_defined # Def: aminoglycoside nucleotidyltransferase # Organism: P.polymyxa_SC2 # Pathway: not_defined # 1 155 102 253 253 254 76.0 1e-66 MTHGPFFSPLSLYDPKGFFPKLKEAAETPTKEDFRHAINEVLVGEMYEFVGKLRNVSLNG SHTYLPYLAVEFAQYGAMLVGLHNQKLFSTGSMVLPEALERPSRPEGFDNVVRMVMSGEL AEPSKIVAACENFWNGLVKWASTHGYVISTKRIPF >gi|333604565|gb|AFDH01000109.1| GENE 74 73919 - 74347 88 142 aa, chain + ## HITS:1 COG:no KEGG:BcerKBAB4_3333 NR:ns ## KEGG: BcerKBAB4_3333 # Name: not_defined # Def: NADH:flavin oxidoreductase/NADH oxidase # Organism: B.weihenstephanensis # Pathway: Nitrotoluene degradation [PATH:bwe00633]; Microbial metabolism in diverse environments [PATH:bwe01120] # 1 141 234 374 375 159 51.0 3e-38 MKEVLTAVGKEIGIENTIIRFSEQKDDMPEYKWTHPEKEIQAFLQVFKEVGIRTIHPSTN QFSKIISKGMTFHQLVRKHWDGYIIGVGNLDTDIASSSIEEGTINLAAFGRPILANADFV QRIKEERAMTSYDPHIHLSSLN >gi|333604565|gb|AFDH01000109.1| GENE 75 74690 - 75307 752 205 aa, chain - ## HITS:1 COG:BH3089 KEGG:ns NR:ns ## COG: BH3089 COG1051 # Protein_GI_number: 15615651 # Func_class: F Nucleotide transport and metabolism # Function: ADP-ribose pyrophosphatase # Organism: Bacillus halodurans # 1 205 3 207 207 256 64.0 2e-68 MSAKWLEWAKQIQAISQIGLAYSKDVYDLERYEMLRDLSLEIMSEYTDLHQEKIRDLFAN ETGYATPKVDIRAVVFREGKLVLVREKLDGFWALPGGWADIGLSPSEVAVKEVKEEAGLE VKADRLLAVFDKKFHEHPESPYHVYKFFVLCTITGGEVQGGLETSEAAFFGKEELPELSV ERNTKAQLLTMFEMVENPGRPVLLD >gi|333604565|gb|AFDH01000109.1| GENE 76 75437 - 76690 1221 417 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKKWLMSGAAFLLLASSASILAPVRAKAMVVNVPWDVTLIQETIMYEDEAFTKPAGSLAP LQTVHITKRDSQWSMADNTEEKGYLIETWQGEKWIKADPETLIPGKYKTETATITLVDKQ ELYDEPLQEAASGTVISPQQVTVTGTIEWDGADFGPPRTIKFYRIQTWLGDKWIYDSFYK EAVQEKAVSTTVDLFQATDSFELPYTGLTKTGTLKTGRYPVTAVWELPPTLGDGSPTWYK VSLPEGDRWILPEGELAGVRETTGKAELPTGGKGFAKPTYYDDENYTEVAPGSYDAFETW KDGELEWVHIRTESAALWVNPGLALKVRPAGIIPTDEEIPLTSRSATYKYPDWSRIHNMK GFFAPQTVKAFEKWLSPEGIAWYHVHGTWDDWWIPENDAEEPAKQPAEPEMNSAVSG >gi|333604565|gb|AFDH01000109.1| GENE 77 76960 - 80301 3458 1113 aa, chain - ## HITS:1 COG:BH2903 KEGG:ns NR:ns ## COG: BH2903 COG0366 # Protein_GI_number: 15615466 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Bacillus halodurans # 554 1111 5 559 561 772 65.0 0 MNILFAASEAAPFAKTGGLGDVIGSLPKELKRNGADVRVILPKYDEIPQVFKDKMETANL VTFRVNLGWRSQYCGIQTLEHEGVTFYFVDNEFYFRRSGHYGYGDDAERFAFYCRAVIDS LPHIGFKPDVIHCHDWQAGMIPVLLRAQYSPYYPFYEDIKTVITIHNLRYQGLFSKETMM DLFGLDAGYFNGDQLEMYDGGSFLKGGLLYSDRITAVSPTYAEEIRTPFFGEHMDSLLRY RSEATVGIVNGIDYDLFNPMTDSHLAVTYRDSLSKKRLNKTHLQQRLGLPVRDDVPVISL VTRLVQQKGIDLIRHVLPELLSLDAQWVIVGTGDHEYEQLFREAAARHPDKLAAYIAFDD GLARQVYAGSDLFLMPSLFEPCGIGQLIAMRYRTVPIVRETGGLKDTVQPYNEFTGEGTG FSFNSYNAHDMLHTVRRAVHFYLHDQDAWRNLMANIKKTDFSWKKSALQYKSLYQELIRE AADASKERQRAWQEAERRRGEQEAQLRVAAAHAAQLREAAPAAASGRTSAGPKSAAVSET GEDDGGGAPGGKAWWKESVVYQIYPRSFKDSNGDGIGDIPGIISKLDYLKELGVDVIWLS PVYQSPNDDNGYDISDYRGIMDDFGTMADWEKLLAEVHSRDMKLIMDLVVNHSSDEHAWF LESRSSKENPYRDYYIWRPGRDGREPNNWTSIFSGPAWEYDEQTGEYYLHLFSRKQPDLN WENPRVREKIYDMMTWWLDKGIDGFRMDVINMISKTEGLPSAGGDRYAWGGDYFMNGPRV HEFLREMNEKVLSRYDIMTVGETPGVTPDDAARYANADGTELNMVFQFEHMELDSGWGGK WDPCAWKLKDLKATIGRWQTGLHGRAWNSLYLNNHDQPRMVSRFGNDREYRVESAKMLAT FLHTLEGTPYIYQGEELGMTNVHFKGIEDCRDVETLNMYRERVTEGGGNHDEVMNAIRIK GRDNARTPMQWSPEENAGFTTGTPWLHVNPNYTEINAEAVLADTDSIFHYYRKLIALRKI HPVIVYGSYEIVAEEDERIYAYTRTLGNDRLFVMLNFTGETASFASPYPLLAGGGGELLI ANYPVGEGSETSGLDAELQLRPFEARVYLLKAF >gi|333604565|gb|AFDH01000109.1| GENE 78 80411 - 81520 1181 369 aa, chain - ## HITS:1 COG:BH1086 KEGG:ns NR:ns ## COG: BH1086 COG0448 # Protein_GI_number: 15613649 # Func_class: G Carbohydrate transport and metabolism # Function: ADP-glucose pyrophosphorylase # Organism: Bacillus halodurans # 1 369 1 368 368 364 48.0 1e-100 MKHVMGVINLVNEPDDLEELTLHRCAGSVPFGGRYRLIDFILSNMVNSSIGNVAVFTQHK YRSLMDHLGSGKEWDLDRKRGGLFVLPSVQDDPAGMSRGDLFQFYSHRDYFYRGREELVI IGRSHMVCNINFEDAVRYHEDMRADVTVIYKEAEEEYSGSYRRLAVRPDGRVTVIEDQTG RLRTDNVSMEMYIMSKSLLLDMVETCLAQGYDHLVRDGIMKNVDKLNVVGYRHDGYLGIV NSIQGYYRHSMELLDPSVLRELFFRKDLIYTKVKDEPPARYEATANVRNSLIANGCVIEG KVDNSILSRGVKISKGAVVKNSIILQNCSIEENVVIENAILDKDVFISRGRVLTGDVRAP FIAAKMKVI >gi|333604565|gb|AFDH01000109.1| GENE 79 81528 - 82676 1310 382 aa, chain - ## HITS:1 COG:BH1087 KEGG:ns NR:ns ## COG: BH1087 COG0448 # Protein_GI_number: 15613650 # Func_class: G Carbohydrate transport and metabolism # Function: ADP-glucose pyrophosphorylase # Organism: Bacillus halodurans # 4 368 3 369 383 505 64.0 1e-143 MRSKECIAMLLAGGEGRRLGVLTQQLAKPAVHFGGKYRIIDFTLSNCTNSGIDTVGVLTQ YQPLVLNSYIGIGGAWDLDRKNGGVTVLPPFMEQGGGDWYQGTANAIYRNIGFIDRYEPE YVLIISGDHIYKMDYDRLLTYHKTKGADATIAVIEVKWEEASRFGLLSVNEESEITEFAE KPKEPKSNLASMGVYMFTWKALKKYLIQDNENPDSSKDFGKDIIPAMLEEGANLVAYPFQ SYWKDVGTIQSLWEANMDLLDDPTQLNLNDKSWRIYSVTPYQPAQFVSDGAQVRRSLVNE GCSVFGDVDHSVLFYGVHIGEGSVIRDSVIMPGARIGSNVTIRKAIIGENTIVDDGATVG DGEEIVLIGGGEHIRATTELKG >gi|333604565|gb|AFDH01000109.1| GENE 80 82666 - 84615 1612 649 aa, chain - ## HITS:1 COG:BS_glgB KEGG:ns NR:ns ## COG: BS_glgB COG0296 # Protein_GI_number: 16080150 # Func_class: G Carbohydrate transport and metabolism # Function: 1,4-alpha-glucan branching enzyme # Organism: Bacillus subtilis # 7 637 6 627 627 703 55.0 0 MAGKQIPGSEDIYLFHEGTSYHSYRLFGAHAEKRGKTTAVRFTVWAPHAREVRVVGDFNE WNGENHRMETVPESGGIWTLAVPGLAEGSLYKYEIHTPDGRIILKADPYAVYSELRPGTA SRFYNLDGYKWGDQNWRRQRARKPAYDQPLNIYEVHLGTWKKKSREEDVLLSYRELADEL VAYVLEMGYTHIELLPLAEHPFDRSWGYQATGYFSVTSRFGEPRDFMYFVDRCHQAGIGV IMDWVPGHFCKDAHGLRQFDGQPLYEPDEPNLAEKPEWGTLAFDFNKPEVHSFLVSNAMF WMDKYHIDGIRVDAVASMLYLNFGKPQSMWVANEHGGDENPAAIRFLKKLNTVVFGSYPN ALMMAEDSTDWPQVTTPVDAGGLGFNYKWNMGWMNDMLNYMKMDPIHRKHHHNLITFSFM YAFNENFVLPLSHDEVVHGKRSILHKMPGDYWQKFANTRVLYGYMSGHPGKKLLFMGGEF AQFDEWKDLEDLDWFLLDYELHGKMQAYVRALNRFYLEQPALWQNDHGHDGFQWISPDDS SQSVVAFIRKGKKAKDDLIVVCNFTPVVHPDYRIGVPGPGTYAEIFNSDDEAYGGSGQAN RQPLASEAVPLHGFDYSLSLRVPPLAAVYLKRSQVERTSRRKGKSKDAK >gi|333604565|gb|AFDH01000109.1| GENE 81 84867 - 85733 847 288 aa, chain + ## HITS:1 COG:mlr3209 KEGG:ns NR:ns ## COG: mlr3209 COG1092 # Protein_GI_number: 13472800 # Func_class: R General function prediction only # Function: Predicted SAM-dependent methyltransferases # Organism: Mesorhizobium loti # 9 288 58 338 338 224 40.0 2e-58 MYVANRWNDYELLDTGGGEKLERWGSYVLRRPDPQIIWPLTAETANWKQAAGHYRRSSSG GGNWDFRQTLPERWTISYDNKLRFHIKPTGFKHTGLFPEQAANWDWMMDKISNAGRPIKV LNLFAYTGGATVACAHAGASVVHVDASKGVVQWAKENLELSGLADRHVRFITDDVFKFVQ REQRRGNKYDAIIMDPPSYGRGPNGETWKLEDDLYPFIETCMTILSDNPLFLLVNSYTTG ISSTVLKNILTLAMHKRYGGHITAGEIGLPITASELTLPCGILGRWEA >gi|333604565|gb|AFDH01000109.1| GENE 82 85737 - 86474 198 245 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit [Lactobacillus helveticus DPC 4571] # 2 220 70 277 285 80 28 4e-14 MAGPKHAADGAAIPVLYEDNHVLVVEKPVNMPTQEDSSRDPDLLSVLKEDLKRRHHKPGN VFLGLVHRLDRPVGGVMVFAKTSKAASRLSDSVRTRTFDKTYAAVVRGRPKEPQGSLRHW LLKDTRTNTVSVVKPGKDGAKEALLDYRVLGSAEGLSLVLVKLHTGRPHQIRVQLAAIGC PLYGDQRYGAGANEPGQQLALWSARLSFPHPTQQETLTFRSVPPERHPWFLWQELVRNLP EQINE >gi|333604565|gb|AFDH01000109.1| GENE 83 86439 - 86843 501 134 aa, chain - ## HITS:1 COG:BS_yusO KEGG:ns NR:ns ## COG: BS_yusO COG1846 # Protein_GI_number: 16080339 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 9 133 18 139 155 64 33.0 5e-11 MYSVEFAKLWTKLSKELKSNMEDQLAPTITEGQLHVLELLAANGTMKPSDFIEYLATTPA AVTTLLDRMERAGLITRSRDEKDRRVVWVDATDKGKSERERGLQIREEVLDAYLSRISSH NQQLLVYLLGKVAN >gi|333604565|gb|AFDH01000109.1| GENE 84 87425 - 87592 258 55 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MHIKKSALGQRALDLGLLKDPGWLERLDEQVPLWVVLEIAFQLMETMDPPTTSYD >gi|333604565|gb|AFDH01000109.1| GENE 85 87611 - 90073 2542 820 aa, chain - ## HITS:1 COG:BH2139 KEGG:ns NR:ns ## COG: BH2139 COG0188 # Protein_GI_number: 15614702 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit # Organism: Bacillus halodurans # 1 736 1 735 816 794 55.0 0 MSSLEQFLPAFLEEVVGDRFGRYSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSGNTPDK PYRKSAKTVGDVMGNYHPHGDSPIYEGMVRMAQPWKMGHVLVDGHGNWGSIDDDPAAAMR YTEARLSPIAMELLRDIEKRTVLFKDNFDNTTKEPVVLPSRYPNLLVNGVSGISSGFATE IPPHNLREVIDACTALIDAPDIGLEELMRHMKGPDFPTGGIIMGEEGIRDAYNTGKGRIY VRSKTEIQDLKAGRQQIVVTEIPYQVVKSRLVTAIENIRLEKKVEGIAEVRDESGRDGMR IVVELKKEADAQGILAYLLKKTDLQVTYNFNMVAIVNKTPKQLGLKDMLSAYIEHQKEVV TFRSQYDLERAEDRAHVLEGLVKALNILDEVIAAIKASKNRLDAQKNLVTQFGFTERQAD AILVLQLYRLTNLEITSLEKELKDVQKTINHLRGILGSMKKLLGVIKDEINEIRTKYGIE RRSDIQNEVEEIKVNLEVMVTPEDVLVTLSNEGYIKRTSMLSYTRSGGAVDNTGLKEGDY LRHLKEVNTIESLLIFTNKGQYFLLPVHLIPEYKWKDNGTAIVNIIPIAKDDRIVDMIPV KDFNEEGKSLVFITRKGQVKRTDLKEYYTNRSSGIVACKVGAGDEILHVQLSDGTKDIML ATKQGMSIRFREEEVNPMGRAAAGVRGLQLREGDEVVAADWVYGDEGEVLVISDLGYAKR TLLVDYPLQGRGGKGIGTFEFKEGKRVKSNGSELVGMFYFKQDYEITAWNSSGEKTVFKT NQAPLDDRKSIGKQLVPVSKGERIAALVKNASLDKRPPNA >gi|333604565|gb|AFDH01000109.1| GENE 86 90098 - 92071 2082 657 aa, chain - ## HITS:1 COG:BH2140 KEGG:ns NR:ns ## COG: BH2140 COG0187 # Protein_GI_number: 15614703 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Bacillus halodurans # 18 657 9 640 655 775 62.0 0 MTEQLEMMTNQPNQPAEYDADAIQVLEGLTAVRKRPGMYIGSTSTSGLHHLVWEIVDNAV DEHLAKHGSKIDVTLHKDGSVTVQDNGRGIPTGMHKTGIPTPQVVFTILHAGGKFGGGGY KKSGGLHGVGASVTNALSEWLEVTIFRDGKIHKQRFEYWIDKKGVEHVGEPRTGLEVTGT TNKTGTRVTFKPDRRVFQNGIAISYDTLAERLQEIAFLNSGLEVILKDERTDQAETFKYD GGASEFVKFLNEGKSVMHDVIHFASEKDDIEVEVALQYNDGYTETIASFVNSIPTRGGGT HETGFKIAYTRAMNEYARKTAILKEKEKNLDGTDLREGMMAVINIKMGEVEFVGQTKDQL GSASARSAVDAIVSEKMAVFLEENPQIAQSMLKKAIQSAKAREAARKAREEVRSGKKGRS ESSNLGGKLTPAQSKDYARNELFIVEGDSAGGSAKQGRDSKHQAILPLKGKPLNPEKAKL ADILKNDEYRAIIATIGAGVGSEFALEESNYGKIIIMTDADTDGAHIQVLLLTFFYRYMK PLIDNGKVYIAQPPLFKVTKKAGKNSAVHYAWTDDQLQALHKELGKGIELQRYKGLGEMN PNQLWETTMDPGSRTLLQVQIEDAAKAERRVSTLMGDKVDPRKRWIIENVDFTESEE >gi|333604565|gb|AFDH01000109.1| GENE 87 92120 - 93112 878 330 aa, chain - ## HITS:1 COG:lin0751 KEGG:ns NR:ns ## COG: lin0751 COG1277 # Protein_GI_number: 16799825 # Func_class: R General function prediction only # Function: ABC-type transport system involved in multi-copper enzyme maturation, permease component # Organism: Listeria innocua # 7 328 4 325 326 329 51.0 5e-90 MGNLAALVQNESIKMVKKRRFLVVILILLALIPMFTYAQMRVSQNTIKQFGTTDWRASER QKIVDYQRSLSSARVPEEWKEFRRAQIKISQYYLDHDINPQSPNGVTFTREFLNNSISLF IPLIIMVIAADIISSEHSGGTIKLLLTRPVKRWKILMSKLITLILFVSLVVLSTAALSYL ISGLVFGYGGWNMPVFVGFKTSGGDVDLSGVHAIDQWKYLLMETGLVWFVGIVVAILSLM LSVLIRSTAAGMGIMLAVLISGTILTNMVSSWEAAKYLFMVNLKLTDYMTGALPPIKGMS LGFSLAVLSVWAVISLFVSFGVFTRKDILN >gi|333604565|gb|AFDH01000109.1| GENE 88 93105 - 94094 961 329 aa, chain - ## HITS:1 COG:lin0750 KEGG:ns NR:ns ## COG: lin0750 COG1131 # Protein_GI_number: 16799824 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Listeria innocua # 6 328 3 300 301 311 54.0 8e-85 MAGDRELVLSVRDVRKSIRGKEIIKGISFDVYGGEIFGFLGPNGSGKTTTIRMLVDLIKP SSGVVTICGFDVQKQHNEAMRYVGCIVENPELYGYLTGWENLEHFARMLPDTGEERIKEV VELVGMDARIHDKVKTYSLGMRQRLGIAQALLARPKLLILDEPTNGLDPQGIKEMRIFIR KLAKGGLSLFVSSHLLSEIQQLCDRVAIISKGQVIAVGEVDELIVQSGSTVLWSVDPVDE AEAWLGRQQGVTVLGRREELLAEEDEPAVLSSLHAGERAGTIVTQLSEERIPEINRGLVD AGIRIYAIEMKHPTLEDLFLSLTEGEKIG >gi|333604565|gb|AFDH01000109.1| GENE 89 94109 - 94918 965 269 aa, chain - ## HITS:1 COG:lin0749 KEGG:ns NR:ns ## COG: lin0749 COG2755 # Protein_GI_number: 16799823 # Func_class: E Amino acid transport and metabolism # Function: Lysophospholipase L1 and related esterases # Organism: Listeria innocua # 2 269 3 258 273 143 34.0 3e-34 MKSRTLWFVVGTTGLISTLLFAGGFGYAVKDVLSPGSGGGQLTAAPKETPAVNELDRKNK IQLVSLGDSLTAGTGDGTGKGYVGRFREKLEEQTGKPVYVLNNLAIPGATTDALLKEWDG KKTTDALKQADLILLTIGGNDIFQSGSDIFTNNDQGFNPEAAAKRVEPTLANLDKILTNI NKANPDAKVMYVGLYHPFLDLDPKKAGSLIVQKFNDGAFALTNKFPNAVFVPTYDLFEQN LNKYLFTDHFHPNQDGYERIASRMAQILK >gi|333604565|gb|AFDH01000109.1| GENE 90 95178 - 95861 619 227 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|304408268|ref|ZP_07389916.1| ## NR: gi|304408268|ref|ZP_07389916.1| hypothetical protein PaecuDRAFT_4594 [Paenibacillus curdlanolyticus YK9] hypothetical protein PaecuDRAFT_4594 [Paenibacillus curdlanolyticus YK9] # 21 214 17 204 216 84 29.0 4e-15 MRLVKVRNRLTGLLMLALLASGCSAPTVSPPSESPSPSPYAAGPEQLIVEPTDLFAGDAA KFSPFLGSYAGSVIVRYKGVKKQLSISYKVWENGKTSETLVSQISLPMGGSNGDTQKDYN GEFIVSVHEVTDNKDADVLQSYTVTASLKDSGGSSTSSFNVPVNRKHFTQSHLLKLYEKI AIPDSTPTAVWGFAASNADAVTFTSGKSPEEEASKAPYAFVMYLTLE >gi|333604565|gb|AFDH01000109.1| GENE 91 95928 - 97064 1271 378 aa, chain - ## HITS:1 COG:DR2012 KEGG:ns NR:ns ## COG: DR2012 COG1835 # Protein_GI_number: 15807008 # Func_class: I Lipid transport and metabolism # Function: Predicted acyltransferases # Organism: Deinococcus radiodurans # 10 355 108 443 457 67 25.0 4e-11 MNRQITTKTSKLKIFEMDIVRAAAIMAVVLIHSTTEAAVYPWEGQVVPDEGSLSQIILFT LNRACQFAVPVFILISGLVLFYRYSGSWNVKTAVQFYKRRLWSVVVPYLIWSLFYYIYNP WISGQPVELDAREFLGDIQWADTGYHLYFMIIILQFYVIFPVLMFLAKYKWFRLSMVPLG ILIQLGFYSYNHLVAVIDHFPSLAPTYFSFFLTGGFIGLYYDFFRQKMKSVVSWALLVML VSGGTYVEMFLLNRYDNRMFENTWYVIAMLFYATSISVVLLGAGKWLLDKLPAAAKWLLP LGSYSFGIYLMHPLILTAFKLKISAPGGMAAYNLYVLLSFLSALLGSLLAAVLYRKAARA LKPGKSKPASPGSVPMNG >gi|333604565|gb|AFDH01000109.1| GENE 92 97256 - 99106 261 616 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 374 594 131 351 398 105 33 2e-21 MSNRQRQSEEKVNGQGAGSGERFVYQDDEMLEKSFDWGQFKRLAVYMKPYSKQIIPIVIV MMIVGAVTKLSIPLIISTTIDSSLHVGGDAKFLFGMVALMLGVYIVQWLANKYRIKYTSV IGQRVIYDLRHDLFRHIQRLSFEFFDKRPAGSVLVRVTNYVNSLQDLFTNGVVNMMIDCV QLVGIVIILLTINFKLGAAIIITVPLMFIVSSQLRKRVRRSWQTVNIKQSRLNAHLNECI QGIRVTQAYTQEKENIRFFEQMNEDNKQAWNRASKLNQSFGPIIEITGAIGYFILFWYGA SLIQSGEITVGLLVAFASYIGNFWEPINRMVQMYSQLLVAMASAERIFEFMDEQPTVGEK ENAAELPPIRGQVSFENIVFEYEKGRTALNHINVDVQPGQSIALVGHTGSGKSTIINLLC RFYDPTEGCVRIDGKDIRDVKLQSLRSQIGIVLQDTFIFSGTIRDNIRFGRLDATDEEVE AAAKAVHAHDFILKLPFGYDTEVQERGNALSMGQRQLISFARALLADPAILILDEATASI DTETELRIQEALKTLLKGRTSFMVAHRLSTIRGADKIIVLDHGTIMETGDHDELMRHQGI YYGLIQAQYKFLQDAI >gi|333604565|gb|AFDH01000109.1| GENE 93 99099 - 100883 201 594 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|225084369|ref|YP_002657150.1| ribosomal protein S16 [gamma proteobacterium NOR51-B] # 342 560 14 229 309 82 30 2e-14 MEVFKGLKRFYWPERKLLFASIFCLICTTALGLVYPNLLRYLIDDVIAVKRYDQVPALAL FVVGVIAVKALFQFLHGFSGGRLGNRVAYNMREAMYEKLQYLSFQYYDKARTGDLMSRLT ADLEAIRNFIGFGFAQILNVFLMVLFGMVMMFSISWKLTLLTMLTMPFLAFAAIRFEGKI HPAFRSLRASMSNMTTAVQENITGVRTVKSFAREPYEVEKFTLRNEEYRANNVITSEIWS KYFPVMELIANLSAVILLGVGGYMVILGSLSVGELVAFFSLVWYIIGPMWGIGFHINNYT QSKASGEKILEILHQYVHVKDGEHAVELNPDTVKGHVSFDRVTFAYPDAEAAIHDLSLNA PPGTVIGFLGGTGSGKSTIISLLMRAYNVKTGQITLDGMDIKDIRLESLRGQIATVFQET FLFSSTIKGNIAYGRKDVTMDEIIRAAKLVKAHDFIMEMPLGYDTVVGERGMGLSGGQKQ RIAIARALIKDPKILILDDATSAVDMETEQEIQAGFKEVMRGRTTFIIAHRISSLKHADE IIVLDKGRVVQRGTHSELIRQEGPYLETYRIQYSDHPDVAGAADAQQRRAAVHE >gi|333604565|gb|AFDH01000109.1| GENE 94 101216 - 101452 73 78 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MEPCLSAALLFQGTEEAGLSGYAGPGVTGCTTATAVLSFSRQGFSGRAVSQAGKPALREA HWAVRELLPRLRSASAMS >gi|333604565|gb|AFDH01000109.1| GENE 95 101512 - 105291 3874 1259 aa, chain - ## HITS:1 COG:BH1700 KEGG:ns NR:ns ## COG: BH1700 COG0699 # Protein_GI_number: 15614263 # Func_class: R General function prediction only # Function: Predicted GTPases (dynamin-related) # Organism: Bacillus halodurans # 23 1196 14 1141 1205 471 30.0 1e-132 MNVLMEQRKDEVLRAFDRLREEMKVAGDGARVRKLIQLEDKLGGEKTVLAFCGHFSAGKS TLINTLCGHRLLPSSPIPTSANIVSIESGEEGAEVVQRSEGEEEARIRRIPLSELDAYCV NGTDIEEVRISYPLPFLGEHAVLLDTPGIDSTDGAHHMATESALHLADAVFYVMDYNHVQ SEVNLAFTKQMKERGKPLYLIVNQIDKHREEELSFDTYKESALEAFRSWGIYPDGMFFVT MKQPDHPRNESGKLKWLLSRLIGMQLELREASVDAAADHLIGEHIQWLREQSEPQKAVLR ERVDEEESAGVLAEYEELTRRLNEAQSLPGQLTDSLRKEIAAIIDNANVTPALTRDKAHE YLLSRKPGFKVGFFGAAAKTAAEVERRLDVFREDYTEQVHAQMDWHLRDALRRAYSGIGM TDEKLLADIDAFSVEVTSPWLASQVNTEAVFGNEYTMTYMRQTAAELKTAARRSALAMID RLAGLAGSCSVRLDSELAPDLRQLEERLGALRELNRFEREEAAREESLRALASWPHAKAY ELPDLAAYRGEEAAVSGVLHTSEMETILRAAHTAPGDRDSLADGESGTASAPHNAPAVGA SAAPAGASDASGATEAAAGGLQLGAKRAERRAQDLAAAADLLGDMPSMRSIVRSLREKAE RLRHKTFTVALFGAFSAGKSSFTNALIGKRVLPVSPNPTTAAINKIVPPTADWPHGTAKV QMKSAEVMLQDVLFSLDVLGVRASAMEEALAAIRGLTPESVTAKGKPHFTFLKAVAKGWP DAAPLLGTQQRVGEDAFAGYVAEESKSCFVEYIELHYSTPLTEQGIVFVDTPGADSINAR HTGVAFDYIKNADAILFVTYYNHAFSQADREFLLQLGRVKDSFELDKMFFLVNAADLAAS EEELQGVVRHIETNLLQHGIRHPRIYPVSSHLAAEGKLSGDGKKLEASGIVPFEQDFIRF TLEELTDISLRSADQELERALHVLQERIEGAQQGEEARKARLQALERAEEAAVRLLKDTD PAPVQRELAKEIQELLYYVKQRTMYRFGELYNASFNPASFREGGGDPKAALRESWRDLLR MIEFDLQQEVLATSLRIEQFLNRLAKGTYESWGTGLRKLLESYEFEAYESVSFDTPDNKL PLEAPDVTDKVLAAHFKNAKYFFEGEGKSKLRAELEGRLNDPVARFVESAVAMLKELYAG HLSDTFAVLEERHLESYREHLEGMRDALQMRTDVGVLASKRDELAKWIPTRSGEASAGH >gi|333604565|gb|AFDH01000109.1| GENE 96 105491 - 105769 338 92 aa, chain - ## HITS:1 COG:no KEGG:PPSC2_c3032 NR:ns ## KEGG: PPSC2_c3032 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa_SC2 # Pathway: not_defined # 1 83 1 83 90 100 65.0 1e-20 MKCIAVYTKDFELFSDLYETIMNTPLSENEEKEIQGVIVSESGEVPENYLEKMRTKPEVV VMKVKEGDITILQHGDVFEIFLPEEKESAVVS >gi|333604565|gb|AFDH01000109.1| GENE 97 105828 - 106433 525 201 aa, chain - ## HITS:1 COG:BS_nth KEGG:ns NR:ns ## COG: BS_nth COG0177 # Protein_GI_number: 16079291 # Func_class: L Replication, recombination and repair # Function: Predicted EndoIII-related endonuclease # Organism: Bacillus subtilis # 1 199 11 209 219 314 74.0 6e-86 MDTIGEMFPDAHCELNHSNPFELTIAVLLSAQCTDETVNKVTQTLFQKYKTPEDYLAVPL EELEQDIRRIGLYRNKAKNIQKLCQLVLERYDGQIPTTHEQLVELPGVGRKTANVVVSNA FGVPAIAVDTHVERVSKRLGLAGKDDSVLEVEKKLMRKVPREEWTLTHHRLIFFGRYHCK AQSPKCDICPLLDICPEGKNV >gi|333604565|gb|AFDH01000109.1| GENE 98 106612 - 109278 2934 888 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_2281 NR:ns ## KEGG: GYMC10_2281 # Name: not_defined # Def: S-layer domain protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 42 888 54 908 909 281 26.0 1e-73 MLLAGALIASSISLSPAYADNKTTDTSTSTQATLAAELKKNFPDVVNTHWALRHITKLAL EGIVEGDEKGNYRPEASVSQQDVIIMAVRTLGLESSISENTSYNLPLKVDTYAQKYVAAA IEKKLISVDEEKDGSKNWGSKPASREWVAKLTIRAIGQQETANGLTDDTPAFTDLKNISG WAKPYISAATVLGIVDGFEDGTFRPKGEVTRAQMATFLSRAERHSKNLSTHVVRGYVNHV SADKISIFDEKGKTTSYKLTPESVFYGNKNDNPINSSELKYTYQVSLVQQGGTAYYAEVL KDEDRSEKITGTLLNVKDRKLTLDNFEAYEIGSGALVLDAKGQEISLSSLVVGSKLELRR NSITGSKEYGQVVVREVPVNKTSEGTVQSVNGDTVAVVDLTSGQSESYTLAKNPTIVDAD NRLVDKTAIKAGDAISYTIENSQITQVKIKTRTGVSKTVKGTFSSLSGDKTGIFYKETDG SFGAGKLSANVQVVIDGVGSPSLYDLDENDELSMDIANDQIVKITVTNRSISNLLFATFI RFDSKYNQLNVQHADGTPGAYTISDNTVVTYGGTSMSFKNYPGFASLFTEGKKVDLKVSK NKVTAIQLSLDVSGTITQINTVANEMSIRANNGQSFTFKMYSPAVEIPNKSGATLADLKI GDLVTASLDYNQVGVTKVVVDRSTLVKVQYVNSSQQVTAVDELNNGITFTLKDTKIVKSD GTSATATDILPDDYLYVTYKGGSVVRAEIVAPSRGKVTNVDSVNGTLTIQEPTGKIQLYT IGTDALIKNGTTLIGLNAIKAGDRVQVIKQSNGKINVQLAAAMTKTFNSYEYAVNQIQFD ANGSTERYNIHRSAYYHKGSETLTASSFNKGETVTVYIVDNKIIEMEK >gi|333604565|gb|AFDH01000109.1| GENE 99 109338 - 109922 667 194 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_2280 NR:ns ## KEGG: GYMC10_2280 # Name: not_defined # Def: lipoprotein LpqB, GerMN domain protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 193 1 200 200 142 41.0 6e-33 MKKKLWVQGIVVGSLVLAVASGCGQKQQPLASNNGGSTPAPVQTVSPSPEPTTSVKPSPS PSPEAKQTEIKAYYSDPDLTKLVEKNVKISYKTEGDKYKSALEALKKSDDAQAVPLFKDV TFQSVKFEKDELKLDLKLGEGAQLGSGGEQFFLDALKKTVFQFPEVKAIYITKDGGQVES LMGHMDLPYPIKRK >gi|333604565|gb|AFDH01000109.1| GENE 100 109944 - 111353 1270 469 aa, chain - ## HITS:1 COG:slr1910 KEGG:ns NR:ns ## COG: slr1910 COG0860 # Protein_GI_number: 16329723 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: N-acetylmuramoyl-L-alanine amidase # Organism: Synechocystis # 196 467 56 338 338 138 32.0 3e-32 MKLWSTVATLLMIALLLPSLAFGATSPPTAKIVLDGKTLTTEVDPLNVDGNVLVPIRQIF EKLGAKVTWDQSKQTATIVRDSMKIQLTVGDRIPVVNGSRAEQLEVAPMNVKGNVLVPVR FVGQKIGYDFKWVQETSTVQIFPKSGQGSGAGTPPTTPTPTPTPPPNPGQVSDKVLVKTI QLTKDQLLVGTDKKSPQANVFKLTSPDRIVIDLPGTELDASLAAKLVSNVGEVPSLHPMV EKVRFSNFNNDPATVRITLDMKAKADLAISAAAGQANLLVGVLKAPEPGKTKYKVVIDAG HGGTDSGAVSLTNKKEKDFVLAVANKVAKLLEQEPNIQTYMTRSTDTFVTLKGRSEFANN LDADLFLSIHANKATPTAGGTETFYYERADSKAFANVVQKHLLEATGFKNRGVKEGDLHV VRETKMPAALAEVGFLSNAQEEALMYTSAFQDKVAASFVAAIKEYLKIS >gi|333604565|gb|AFDH01000109.1| GENE 101 111655 - 112263 646 202 aa, chain - ## HITS:1 COG:NMA1452 KEGG:ns NR:ns ## COG: NMA1452 COG0066 # Protein_GI_number: 15794357 # Func_class: E Amino acid transport and metabolism # Function: 3-isopropylmalate dehydratase small subunit # Organism: Neisseria meningitidis Z2491 # 1 196 1 205 213 255 58.0 3e-68 MEAFKQHTGLVGPVDRVNVDTDAIIPKQFLKRIERTGFGQFLFFEWRFTEDGQVIPTFDL NKPRYQGASVLISRANFGCGSSREHAPWAILDYGFKVVIAPSYADIFYNNCFKNGILPIK LSEEQVEELFQRTAKHEGYKLNVDLENKTLTDDHGLKIDFDLDEHRRQFLLQGLDDIGLT LQHADKISAYEAQHQERLALNL >gi|333604565|gb|AFDH01000109.1| GENE 102 112299 - 113720 1357 473 aa, chain - ## HITS:1 COG:BH3056 KEGG:ns NR:ns ## COG: BH3056 COG0065 # Protein_GI_number: 15615618 # Func_class: E Amino acid transport and metabolism # Function: 3-isopropylmalate dehydratase large subunit # Organism: Bacillus halodurans # 1 463 1 463 472 665 69.0 0 MSKKTLFEKIWNNHVIYQEEGKPSILYIDLHLVHEVTSPQAFEGLRLSGRPVRRPELTFA TMDHNVPTKDRFNIKDPISKQQIDTLSQNCRDFGVTLFDLNHVDQGVVHVMGPELGLTHP GKTIVCGDSHTSTHGAFGALAFGIGTSEVEHVLATQTLQQAKPKTLEVRVNGALPVGVTA KDLILGIIAQYGTDFATGYVIEYTGEAIRGLSMEERMTVCNMSIEAGARAGLIAPDETTF EYLRGRQYVPQDAAFDQAIEAWKLLTTDEGATYDLVVDFDAASLVPQVTWGTSPGMGTGV TNSVPNPQEMATENERKAAEKALEYMGLEPGTPMTELTVDRVFIGSCTNGRIEDLRRAAA VASGYKVNANVNAIVVPGSGRVKLQAEKEGLDKIFIDAGFEWRDAGCSMCLAMNPDVLSP GERCASTSNRNFEGRQGRGGRTHLVSPEMAAAAAIEGRFTDVRGWTYKVPQEA >gi|333604565|gb|AFDH01000109.1| GENE 103 113851 - 114765 932 304 aa, chain + ## HITS:1 COG:BS_ycgK KEGG:ns NR:ns ## COG: BS_ycgK COG0583 # Protein_GI_number: 16077386 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus subtilis # 1 298 1 309 324 214 40.0 2e-55 MELRQLQYAVQIALERNFSRAAEKLHIAQPSLSQQLSKLEREIGVLLFQRSTNSVELTHA GSIFVDKAQAILDSLEQLKQEMEDISQMKKGKLVVGSMPITGSTIMPYVLPVFQAAYPDI EVVLVEETSANLEKLTTSGQTDISLLSLPLQEDSLVYSPLLEEEIVIAFPPSHPLAKRHM ENGEPVTISELENEAFISLKKGQGFRKINVALCQEAGFTPNIVFESSNMETVQSLVAAGM GIAFVPYLIAKRTRSELSPVHLPLRNHPSRTLVIAHRRGRYLSKAADAFIETIQAVMKDQ GSFE >gi|333604565|gb|AFDH01000109.1| GENE 104 114867 - 115127 392 86 aa, chain + ## HITS:1 COG:BS_ydaS KEGG:ns NR:ns ## COG: BS_ydaS COG2261 # Protein_GI_number: 16077504 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Bacillus subtilis # 1 83 1 83 85 71 55.0 5e-13 MIGFIITIIMAVVIGIIGDAIVRSNMPGGILGSMLAGFVGAWLGSLLLGSWGPEIGGFSV IPAIIGAALFVFLIGLASRAFHRTNA >gi|333604565|gb|AFDH01000109.1| GENE 105 115206 - 115571 406 121 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_1823 NR:ns ## KEGG: Pjdr2_1823 # Name: not_defined # Def: general stress protein # Organism: Paenibacillus # Pathway: not_defined # 1 107 1 107 107 73 44.0 3e-12 MSNESKGNGVLLGTLVGAGVGAITALLLAPKTGREMREDLSVKYSEWMAKGQELASDAKT KVADVASRVNEQTSNLVDRSKDLVSSAANSTNRALDNVKEMKEERTDQMLNSMDPSNKPM N >gi|333604565|gb|AFDH01000109.1| GENE 106 115699 - 116028 403 109 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_5547 NR:ns ## KEGG: GYMC10_5547 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 30 109 35 114 115 102 57.0 4e-21 MRHSSPPRERRVPGEVPIPSQEPSRKELALERLATILERSEYKDVIENYLNPRKRIITNF TAGLARGLGLTIGTTVVVALLGWIVSQFLSMPIIGEFIAKLVSYVDMYK >gi|333604565|gb|AFDH01000109.1| GENE 107 116179 - 116493 302 104 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTVKYTIDCEGSEILVREVDGATYQLCIRASTNPLGNGNILETYSEFYRAVRAADHFCET YAKAKENGFYLQETFLVKPDKHPIPVSKILNEEMQREQVNALFA >gi|333604565|gb|AFDH01000109.1| GENE 108 116641 - 117582 883 313 aa, chain - ## HITS:1 COG:BS_yqxL KEGG:ns NR:ns ## COG: BS_yqxL COG0598 # Protein_GI_number: 16079530 # Func_class: P Inorganic ion transport and metabolism # Function: Mg2+ and Co2+ transporters # Organism: Bacillus subtilis # 57 304 56 303 317 146 33.0 4e-35 MEDKELESSSNWVWHDLHDKDGDLNVAIDKLPEDLKPLVKQAAAEPFEARLYRNKGSELL EGAFYYDFDSECREGTPIFHFLVNEDHLVTINFKEELLAPFDPDLIREQALNAKNALEGL FVILGYIAERLLHVLTDYEKRMRQVGEHMRKRNNSKLLDRILDRRHELLDMTKWVRPLKD TMMTTKELFVENMEEGLEHRRMCIKIERIMTRLKLYTEEVEALLALDTSIANYRGNEITK TLTVFTAVFAPPTMLAGIWGMNFENMPELKWTAGYYLALGLIVALPIVVLGWLHWKGWTG DIIKGKSKNSNLK >gi|333604565|gb|AFDH01000109.1| GENE 109 117676 - 118455 668 259 aa, chain - ## HITS:1 COG:BH0529 KEGG:ns NR:ns ## COG: BH0529 COG1191 # Protein_GI_number: 15613092 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit # Organism: Bacillus halodurans # 1 247 3 250 261 163 37.0 3e-40 MKLQSERKEMEHIHDLIRQYQETECNDIATSLLIQYESTVKMAAAKMSRNRPDLYEDLIQ IGQISLLKLFKQFDPSHGVQFDAYMMKSIIGHMKNYLRDKSWYIQVPRRIKEKGFQIQQA IDHLTMRLERSPNVNEIAEELNLTVEETIEILAGRECYHYVSLDMPLSTEENGSTIGDVL GTQVDEYLNVDNKLDLQEALSHLKPEEQKVLMLAYVDGYSQRTIAQDLGVSQMSVSRIQR RALDKLRKYFEKNKPGEGA >gi|333604565|gb|AFDH01000109.1| GENE 110 118452 - 118901 409 149 aa, chain - ## HITS:1 COG:BS_rsbW KEGG:ns NR:ns ## COG: BS_rsbW COG2172 # Protein_GI_number: 16077539 # Func_class: T Signal transduction mechanisms # Function: Anti-sigma regulatory factor (Ser/Thr protein kinase) # Organism: Bacillus subtilis # 1 143 1 144 160 115 41.0 3e-26 MESKNRNVSLTLPAEAEYIDLVRLTLYGISSKMGFSYEDIEDMKVAVSEACNNVVVHAYE PGQGGKMEVHFEEVDGGIKIIVQDQGLSFDHVTKVGSADSLHNKSLDEVSSGGLGLYLMQ ALMDDVEVKGDHGTVVILTKLVSKSEEMV >gi|333604565|gb|AFDH01000109.1| GENE 111 118922 - 119257 392 111 aa, chain - ## HITS:1 COG:BH0527 KEGG:ns NR:ns ## COG: BH0527 COG1366 # Protein_GI_number: 15613090 # Func_class: T Signal transduction mechanisms # Function: Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) # Organism: Bacillus halodurans # 16 99 12 95 110 60 33.0 7e-10 MVQENKFRMEKQITDDDNIISLIGELDLSKASEFNTNVDPFVQDVGRKLILNLKELTYID STGIGVILTIIKTRHALKAPFAVENIPPKVQKLFDLTGLTPFLSAVANTVN >gi|333604565|gb|AFDH01000109.1| GENE 112 119404 - 119862 541 152 aa, chain - ## HITS:1 COG:BH3245 KEGG:ns NR:ns ## COG: BH3245 COG4768 # Protein_GI_number: 15615807 # Func_class: R General function prediction only # Function: Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain # Organism: Bacillus halodurans # 5 140 7 134 148 65 28.0 5e-11 MIWQISLAVIAIAFVVLVVFLVKTLRSVTDLVAQTNQTIQQVQQQVTVVSQEANELLRHT NEVSLDVRNKLHALDKTFYTIKNVGDVVSEITTSVRQTSATVTNTMRNKVEKELNSPKSI VNRIAPLVPVAVDMWKRLKQSRTTNSKSVAVK >gi|333604565|gb|AFDH01000109.1| GENE 113 120057 - 120518 593 153 aa, chain + ## HITS:1 COG:BS_dps KEGG:ns NR:ns ## COG: BS_dps COG0783 # Protein_GI_number: 16080117 # Func_class: P Inorganic ion transport and metabolism # Function: DNA-binding ferritin-like protein (oxidative damage protectant) # Organism: Bacillus subtilis # 10 151 3 144 145 142 50.0 2e-34 MAKTSTAKEKQTVTLLNKQVANWGVMYVKLHQFHWYLKGPSFFVLHVKFEELYKEADLYL DTIAERILGLQGSPLSTTKEFQTNSSIKEVSPERNAGQMVEALIQDFRTITEESKEAIET AENEGDHGTADMLTEICTNLEKHIWMLESYIND >gi|333604565|gb|AFDH01000109.1| GENE 114 120559 - 120717 215 52 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_5170 NR:ns ## KEGG: GYMC10_5170 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 3 52 5 54 54 67 74.0 1e-10 MDQDKNVDIEQRHIEKRSDSSAVASTFIKYAAYLIIFFGFLYFLVKYVFPKF >gi|333604565|gb|AFDH01000109.1| GENE 115 121113 - 121748 584 211 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_1862 NR:ns ## KEGG: Pjdr2_1862 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 62 206 36 180 185 85 31.0 1e-15 MNKKSLTMALLGGALLFSGAHGLEVPASAGADDGLISKAAPPLVLGAGGAITETAGYKTV NANGTVTAKPAVVPAEETPAEASGSIKLERVNGISLSDDVNTIVKRKGEPKSIRKDEFFG ETKILEYPDCSVAVGEYGIEYVEVTPDHKQINIDGKPVANNLQALEKTLGEPYWVAEDGL VFTQDNQALKLFVDPDSGQLKSVHFFSSVTE >gi|333604565|gb|AFDH01000109.1| GENE 116 121806 - 122198 375 130 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNHSIIVVDSEKEIRDVIRQLQTAGCEPHCIHVLSDEAVDTEEMLRPRYTSRIGFSAEQM AYTMATIFRGSGRAMRSKLISLGLAGSAIPYYEEEISRGRIVVVAVPSQFVYAYDASYAD QPIEASAAGQ >gi|333604565|gb|AFDH01000109.1| GENE 117 122212 - 123393 1005 393 aa, chain - ## HITS:1 COG:CAC2237 KEGG:ns NR:ns ## COG: CAC2237 COG0448 # Protein_GI_number: 15895505 # Func_class: G Carbohydrate transport and metabolism # Function: ADP-glucose pyrophosphorylase # Organism: Clostridium acetobutylicum # 2 368 3 369 380 406 53.0 1e-113 MRKQSVAILLAGGEGRRLGALTQNTAKPAVHFAGRYRMIDYALSNCRNSGVDTIGVVTQY KPESLHQHIGTGEAWLSETDKGCVEVLCSNQEHVIGNEFTGTANAVYQNRHFIEKHDPEY VLVLSGDHIYQMDYSKMIEQHQKLGSVATIAVKPVGWDEASRFGIMNTDEEGRIVEFEEK PAQPKSNLASMGIYVFNWDFLKKVLERDDMSADSSHDFGKDVIPMMVEEGVRVHSFSYEG YWKDVGTIDSLWQAQMDLLNGSPLMSELEWPMYTAQIANVKPHVDRTAKVDRSLISENCA VYGQVQNSVISHGVYIGKGSVLTDCVIMPNVRIGNNVKLHKAIIGEGSVLCDGVTVGKTD AQTISVVGDHEVLYKINDKAPKIYLPRLEQRIG >gi|333604565|gb|AFDH01000109.1| GENE 118 123728 - 124912 1207 394 aa, chain - ## HITS:1 COG:alr2279_3 KEGG:ns NR:ns ## COG: alr2279_3 COG0642 # Protein_GI_number: 17229771 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Nostoc sp. PCC 7120 # 151 386 1 239 260 236 51.0 6e-62 MNLDEPIKILMVDDQPENLLALEAVLAEENYHLVKAGSGEEALRCLLHDDFAVIVLDVQM PGMDGFETARWIKSREKSKDIPIIFITAASHEKEHVFAAYSVGAIDYIVKPFVPHTLKAK IEGFVNLYLVQKKLQHQSELLNMRTQELLTAKEAAESANRAKSEFLALMSHEIRTPMNGV MAMTDLLLETELSDEQREYADTISRSGAALLHIINQILDFTKLESSKMEMNTEPFDLDVC MEETMDLFYGECRKKDLKLERELAENVPTHLIGDELKLRQVLINLIGNAVKFTETGGIKV KVTNLGKTGNGSRMILQFRVRDTGIGIPVEKRNRLFQPFTQVDSSMTRKYGGTGLGLVIC QNLVELMSGKIEVYSQEGQGTEFVFTIQAEELRP >gi|333604565|gb|AFDH01000109.1| GENE 119 124959 - 125828 764 289 aa, chain - ## HITS:1 COG:all1848 KEGG:ns NR:ns ## COG: all1848 COG1352 # Protein_GI_number: 17229340 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Methylase of chemotaxis methyl-accepting proteins # Organism: Nostoc sp. PCC 7120 # 22 288 9 275 276 322 58.0 4e-88 MDSNFHPIDQLPTFSGLQAEHERIEISLLLEGIYRIYGYDFRNYSYPSIRRRIWHRILAE KLTTVSGLQERVLHDRECLERLLSDLVIHVTEMFRDPEVFLTFRQKVVPLLRQYPAIRIW HAGCATGEEVYSMAILLHEEGLYDRTRIYATDINEDVLKKAEKGIYPLRNMKDYTRNYLQ SGGKEAFSKYYTASKDSVTLHSFLRDNIVFAQHNLVTDRSFNEFHVILCRNVLIYFNTQL QNQVHTLIYESLGPSGFLILGDKETITFTKHASAYEAVSTADKIYRKVQ >gi|333604565|gb|AFDH01000109.1| GENE 120 125912 - 129589 3778 1225 aa, chain - ## HITS:1 COG:alr1883_5 KEGG:ns NR:ns ## COG: alr1883_5 COG0784 # Protein_GI_number: 17229375 # Func_class: T Signal transduction mechanisms # Function: FOG: CheY-like receiver # Organism: Nostoc sp. PCC 7120 # 837 1225 1 389 389 434 52.0 1e-121 MKISTKLMAGFGLLFILMFVLAGIGTTRISSIDESLDSAFVNRFNKTRMAYTARSDVNTI AKYMANLLLNSDPNQLGAKENLAKANTYKEKLKEGVTALQKSANSDVEKQLTYETVKSTE NFMTYLNQAIELYENGKVAEANKLRTDIGVTYQDQVTESVDHLTQYLDDNVQKGINEFKA SNSKTLLLTIVLTVAALIIGLGIMYWIMRSLSRGLALLTGMIKGFGNGRFDPGYRVEVTT TDEFGKVADVFNTMADDLEELMHNERTFNKLNEDQAWLKSNVANMSMLLQDQTNMHDLTN SFISEASRMIGATFGAVYLLEREGMRTRLVLSSAYAFDKDPEGNLLPEFALGQGLVGQAA ADGRRIMVQDEVDKYLTIHSSFGQLDAKYLVVEPVVSEEEIGAVVEFAGLKMLSEKELDL LEQLTENLAVSIGRIRSRERVEELLRMSQALTEELQSQSEELISQQEELRTSNEKLEEQT KALKASEELLQSQQEELEQNNEELLRKTKQLQIQVQETELANRQIEEAKEALEKQAFELA MASKYKSEFLANMSHELRTPLNSMLILSQMLAENKDGNLYDKQVEYAETIHSSGSDLLKL INDVLDLSKVEAGKVEVQAEYVLVPDIMETIQRSFEQVARKKALGFEITIDNGVPRMLYT DCMRLEQILRNLLSNAFKFTSQGSVHLHVYPVKEGEPQIAFSVKDTGIGIAEEKQQIIFE AFQQADGTTSRQFGGTGLGLSISKQLASLLGGTIEICSREGEGSTFTLFIPHRQYSERVG GSAEAAAAGQEQQALPLPGASAVPQLPAPAPVPVKSAPKSVQREVEDDRGSITENDKVLL IVEDDVHFMNVLVDMARSRGFKALVAMQGDIGLQMAKEYKPDGIILDIQLPIVDGWSILV QLKNNAETRHIPVHVMSVVDEVHQGLSMGAIAYMRKPSSKDVLEQAFIELEGFIDQNLRK LLLVEDDPVQMNNLIELIRHDDVLIEVATTADEAIVKLRERHFDCMVLDIGLADQSAFDL LERIKAEEELRRLPIVIYTEKEYDKKDEMRLKKYAESIIIKNVKSPERLLDETALFLHRV EETLPEEKKRILQRLHSSEAVFAGKKVLLVDDDIRNVFALSNLLEGYNMKVLFAETGRQA LSILEKEPDLDLVLMDIMMPEMDGYQAMKEIRSMPQFDNLPIIALTAKAMRDDREKCIQA GASDYITKPINNDQLMSLIRVWLFK >gi|333604565|gb|AFDH01000109.1| GENE 121 129640 - 130779 1185 379 aa, chain - ## HITS:1 COG:BS_yvfP_2 KEGG:ns NR:ns ## COG: BS_yvfP_2 COG2208 # Protein_GI_number: 16080464 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Serine phosphatase RsbU, regulator of sigma subunit # Organism: Bacillus subtilis # 118 378 19 274 275 169 34.0 8e-42 MSIMIVDDNPVNLIVIEKILKSAGYSNMHRASSAMELFEMLKIDNPSSSDLQIDLILMDL MMPEIDGIEACKKLQQIEELKDIPIIIITAMGDSIKLAEALEAGAIDYVTKPINKIELVA RIKSALRLKYEKDWHKENDNRIRSELQLAKNVQSSVLSLPIETEKIRIEAYYNPSYELAG DLYNWYPIDEDRYGVMLLDIMGHGISSSLVCMFISSVLRDTITKFVTPELVIAELNRYMN RLHNDQNHLNYYFTAIYMLVDTKNKTIDYVNAGHPPGFLMNDSGEAVPLTNGTCAVGFFE EMDIKPGRITYTGKSRILLYTDGLLEEIEEADTELPTRLITAVQQKGDMGLHAVVDELLD EEVQNNHMDDICLIWIDIP >gi|333604565|gb|AFDH01000109.1| GENE 122 131236 - 131673 506 145 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_5556 NR:ns ## KEGG: GYMC10_5556 # Name: not_defined # Def: YflT # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 2 108 7 113 113 105 50.0 5e-22 METKVRLAANEEQALREVKNLQAEGFNLDEIYVMTHDNDRTEGVAEMTNTNEVGVAEEGL MTAAANLFRSKGDKLRAKMESLGLSSSEADTYEKELDRGKILVIAYADRDGDGYPHDGRL REDETTLPPTGIYMSGRDNQNSNLF >gi|333604565|gb|AFDH01000109.1| GENE 123 131778 - 131942 226 54 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLKWAMIFLIIAIVAGIFGFFGIVSAAAGIAKVLFFLFLVLFVITLITGRRSSV >gi|333604565|gb|AFDH01000109.1| GENE 124 132043 - 132858 859 271 aa, chain - ## HITS:1 COG:BS_ykrU KEGG:ns NR:ns ## COG: BS_ykrU COG0388 # Protein_GI_number: 16078421 # Func_class: R General function prediction only # Function: Predicted amidohydrolase # Organism: Bacillus subtilis # 13 270 5 259 259 281 51.0 7e-76 MDNQQSFPNRVRLALIQMDITIGEPEVNRRKVEKLLLEAVGGAQKPDIIVLPEMWNTGYA LDRIHELADPEGRITRKMLGSFAKEHGVHIIGGSVAEKKGEEVKNTVYGFNRNGEEILEY SKIHLFQLMDEHLSLAAGNQRGSFDLDGIPAAAVICYDIRFPELTRKLALDGAQMLFVPA EWPHPRLHHWRTLLMARAIENQMIVVSCNRVGESKGTSFFGHSMVIDPWGQVLAEGGEEE EIIFAEVDLAEVASVRGKIPVFADRRPAVYE >gi|333604565|gb|AFDH01000109.1| GENE 125 133071 - 134354 1002 427 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNSSRPLSRRKLLAALGAAGAVMAAGSLPSAVKARGAETLIHNVKEYGALGQGSYGDTDS TGIQSAVHAAAQTGGIVYIPVGRYILTKPVQLKSGIRIMGAGISQTTLTAAAGCAFTSLP PASDIEIGSLSFHGGSAPGAVASPVEDSIISLLQASHVSITDCRFFTLSSPILLRNCHAC RVDHCDFELILGNIPGKPHYGTGIYCSGGEGHTFFRNTFKSVTNTAVYLDGGCSRSVIQS NDVTYIDQYAFLVQSDQAAEPAARNDIINNRITNLDAAKSGITAILLKRNVSGCAVSHNE ITGLDGDGIRLEGDQESGKLQPADHTLQGNVLKGIKGNGVVISNAVRTSVHGGTFRNLGA SGIHIESRGETGSRETAAGGNLFSGCKTAGIRISGKKSTGSLLFGNGGTGNGQNVLDEGT GTVKDSF >gi|333604565|gb|AFDH01000109.1| GENE 126 134573 - 135724 1139 383 aa, chain + ## HITS:1 COG:lin0314 KEGG:ns NR:ns ## COG: lin0314 COG0436 # Protein_GI_number: 16799391 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Listeria innocua # 1 383 7 389 393 513 62.0 1e-145 MASLPSQFFAGLVKKANAQIAQGHDVINLGQGNPDRPTPSHIVKSLQESAENPLYHKYPP FSGYGFLKEAIAARYREDYGVTLDPETEVAILFGGKTGLVEISQCLLNPGDVCLVPDPGY PDYWSGVALAGAEMAFMPLREDNAFLPDYGSLSENDVRRAKLMFINYPNNPTASTASEAF YDETIAFASKNGIVVASDFAYGAIGFDGSRPVSFLERPGAKEVGVEFYTLSKTYNMAGWR VGFALGNPDIIRIINLMQDHMYVSLFGGIQAAAATALTAPQDCVHELRAVYESRRNALFG ALDEIGWEAKPSQGSFFAWLPVPRKYSSAEFADLLLNEAKVVVAPGIGFGTHGEGYVRLG LLTGEERLREAVRRIGNLHLFDK >gi|333604565|gb|AFDH01000109.1| GENE 127 136224 - 137348 1261 374 aa, chain + ## HITS:1 COG:BH1505 KEGG:ns NR:ns ## COG: BH1505 COG0263 # Protein_GI_number: 15614068 # Func_class: E Amino acid transport and metabolism # Function: Glutamate 5-kinase # Organism: Bacillus halodurans # 2 363 3 365 374 324 47.0 2e-88 MQQRIVVKIGSSSLTSDAGGLNPAPIAYFAAELARLQQNGFEVVLVTSGAVAAGFSFLGY KSRPKLLHEKQAAASVGQALLMRAYQEAFHQYGIGAAQILLTRDDFTSRKRVSNATATME ELLRRGFIPIINENDTVSVDEIKFGDNDTLSALVANLLKAGQLIIITDTDGLYTDDPRKN KDARRIERVDEISDELYRIAGGSGSSVGTGGMRSKIEAARIAMRGGIPVFVGRATEPHDL RLAAEGNGRGTYFSAADHTLSIKKQWVGFHSVPQGKVTVDQGAENALLSGGKSLLPAGVT AVEGDFHPGDVIEVCGEDGSVIGRGVANYVAWQLQAVMGLGTGEIQRRVEVPRIEVIHRD EWVTLQAYRASQNT >gi|333604565|gb|AFDH01000109.1| GENE 128 137493 - 138740 1231 415 aa, chain + ## HITS:1 COG:BH1504 KEGG:ns NR:ns ## COG: BH1504 COG0014 # Protein_GI_number: 15614067 # Func_class: E Amino acid transport and metabolism # Function: Gamma-glutamyl phosphate reductase # Organism: Bacillus halodurans # 1 415 1 416 416 449 57.0 1e-126 MSEVRQKATIAKEASSRLGNLTTGQKNTALLRMAEALVAEQDSIIAANAEDLKRGADTGL GTSLLDRLALTPERIESMAEGLRQIIELPDPIGDQLESFARPNGLRVEKIRVPLGVIGII YEARPNVTVDAAGLCLKTGNAVVLRGGSSALRSNERIVEVLQAALAGTDVPPGALQLISD PDRASVDEMLKLNGLLDVLIPRGGASLIQNVVKNATVPVIETGAGICHTFVDESAKPEMA EKIAINAKVQRPSVCNSMETLLVHRSHAEKHLSALAGKLSALGVELYGCPRSRELAPQIK TAADEAWDTEYNDYVLNVKVVDSLDEALAHIRRHGTMHSECIVTENEAHASRFLQEVDAA AVYHNASTRFTDGFEFGFGAEIGISTQKLHARGPMGLPALTSTKYRIYGDGQIRE >gi|333604565|gb|AFDH01000109.1| GENE 129 138806 - 139660 736 284 aa, chain + ## HITS:1 COG:BS_yqjO KEGG:ns NR:ns ## COG: BS_yqjO COG0345 # Protein_GI_number: 16079437 # Func_class: E Amino acid transport and metabolism # Function: Pyrroline-5-carboxylate reductase # Organism: Bacillus subtilis # 8 280 2 270 278 206 41.0 3e-53 MNSIIHTKRIAFVGAGSMAEAVLRGLIERGITAPGQVFASNRQNEERLQELRERYGVEAS CDPAIKRERISSADIVVLCMKPKDVEASFDELKPMLNGSQLLVSVIAGLTIRKIEILLDT QMPIVRTMPNTSSTIGLGATGMSFSESVSEEQQALATKMFEAVGMVTVVPEDYLEIVTGL SGSGPAYVYYFMEALIQAGIAGGLEENEARRLTMQTLLGAVHMVERTGEEPAELRRKVTS PNGSTLAALQTLDRYKFPEAVAAAVFSSAKRAKEMGAEIAPHIR >gi|333604565|gb|AFDH01000109.1| GENE 130 139703 - 141007 1230 434 aa, chain + ## HITS:1 COG:BS_ykrW KEGG:ns NR:ns ## COG: BS_ykrW COG1850 # Protein_GI_number: 16078423 # Func_class: G Carbohydrate transport and metabolism # Function: Ribulose 1,5-bisphosphate carboxylase, large subunit # Organism: Bacillus subtilis # 3 431 11 409 414 442 54.0 1e-124 MSSYCLATYRCYDDTADFNKKAQGIAVGLTVGSWTDLPEARKAQMQQHLGHVVSVDVREA GEASPESRRYADIRIAYPDVNFSRDLPALLVTVFGKLSMDGKIKLTDLSFSESFLSAFAG PKFGLQGVRDLLGVHDRPLLMSIFKSVIGQDLEGLGEQFYAQAAGGVDLIKDDEILFENP LTPIEKRVAVCMEASRRAYDVTGQKLLYATNLTGPTSKLANQAKKAIDAGANALLFNVLA YGFDTLCELSADPDISVPIMAHPAMAGAFYPSAEYGISASLLLGKLMRVAGADLVLFPSP YGSVVMPREENLAIKQVLLTENLEQDYLYRHSAAEGTEHQSSASANVSPALKTSFPVPSA GIHPGLVPLILRDFGTDVVVNAGGGIHGHPMGAIAGGQAFRQAIQATLEQKPLQEAAQQH PELKAAIEAWGVKS >gi|333604565|gb|AFDH01000109.1| GENE 131 141004 - 141672 535 222 aa, chain + ## HITS:1 COG:BS_ykrX KEGG:ns NR:ns ## COG: BS_ykrX COG4359 # Protein_GI_number: 16078424 # Func_class: E Amino acid transport and metabolism # Function: Uncharacterized conserved protein, possibly involved in methylthioadenosine recycling # Organism: Bacillus subtilis # 1 217 1 215 235 208 45.0 7e-54 MSTRQKIVFCDFDGTITVSDNIVAIMKHFDPPGWEAIVKRLVEERAISVRHAVGEMFRLL PSSRQHEVIEFAISNAVIREGFADFVAYCRQNGIKLLVTSGGIDFFVYPLLESFDIPREH IYCNGSSFEGETIEILWPHACDEHCGADCGMCKTSIIRSYPADDYERILIGDSVTDFQGA KLVENVYARSHLIELCEELKLPYVPFETFHDIIRDLEAKIQA >gi|333604565|gb|AFDH01000109.1| GENE 132 141669 - 142307 667 212 aa, chain + ## HITS:1 COG:BS_ykrY KEGG:ns NR:ns ## COG: BS_ykrY COG0235 # Protein_GI_number: 16078425 # Func_class: G Carbohydrate transport and metabolism # Function: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases # Organism: Bacillus subtilis # 6 203 1 196 209 193 51.0 2e-49 MTELTLEQKQHAYDELREIKANLAARGWFPATSGNLSVRVGEFTPENFTFAVTSSGKDKS LQSPEDFLLVNEKGTPVEATRLKPSAETLIHCEIYKYTGAGAILHVHTMFNNLASELYGE EGFIPVEGIEIIKALNIWEEDAAIRIPVLPNYADIPKIAELVQGAIVPRIPGIVLRKHGI YAWGANVAEAKRHLEAFEFMFEYVYRWHLLKK >gi|333604565|gb|AFDH01000109.1| GENE 133 142486 - 143175 664 229 aa, chain - ## HITS:1 COG:BH1697 KEGG:ns NR:ns ## COG: BH1697 COG3935 # Protein_GI_number: 15614260 # Func_class: L Replication, recombination and repair # Function: Putative primosome component and related proteins # Organism: Bacillus halodurans # 19 226 10 207 233 155 38.0 7e-38 MKPNDNDRKRVERALLAGMTAGTVAVPHLLLRYYHRMKLSELEVMLLIHILAFQENEKKD FPTHDEIQDRMTTPQDQVIEAIQKLVNSGVLRIEQEIDSVSDIQYERYNLRPMYEKIASC YAEDLLQKAARQAEAQRSEAQPGREKDVYSIFEAEFARPLTPMELETITSWLDRDGYKEE LVLAALKEAVFAGKVHFRYVDRILLEWSRNRITTVEQAKEFTQKFRGNR >gi|333604565|gb|AFDH01000109.1| GENE 134 143248 - 144543 1294 431 aa, chain - ## HITS:1 COG:BS_asnS KEGG:ns NR:ns ## COG: BS_asnS COG0017 # Protein_GI_number: 16079293 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Aspartyl/asparaginyl-tRNA synthetases # Organism: Bacillus subtilis # 5 431 3 430 430 635 71.0 0 MSSVSTIHEVKDHVGESVRIGCWLHNKRKSGKIQFLQLRDGTGFIQAVVVKSEVSEDVWE AASKLTQESSLYVTGSVREEPRSKSGYELTVEGVEIIQITQDYPITPKEHGVDFLMDHRH LWLRAPRQRAILVIRAEIIRAIQQFFDDKGFQLVDPPILTPSSCEGTTNLFHTKYFDEDA YLTQSGQLYMEAAAMALGKVYSFGPTFRAEKSKTRRHLIEFWMIEPEMAFVDHEESLRVQ EQFVSHVVQTVLKNCRSELETLGRDISKLEKIQAPFPRITYDEAVQFLQDTGHEFPWGED FGAPHETAIAEKYEKPVFITHYPTGIKAFYMKPDPNRPEVVLCADMIAPEGYGEIIGGSQ RIDDPELMEERFKEHELSSEAYQWYMDLRKYGTVPHSGFGLGLERTVAWICGLEHVRETI PFPRLLYRLYP >gi|333604565|gb|AFDH01000109.1| GENE 135 144643 - 145860 1230 405 aa, chain - ## HITS:1 COG:CAC1743 KEGG:ns NR:ns ## COG: CAC1743 COG0282 # Protein_GI_number: 15895020 # Func_class: C Energy production and conversion # Function: Acetate kinase # Organism: Clostridium acetobutylicum # 1 400 1 400 401 458 56.0 1e-129 MNILVINAGSSSVKYQLYNMKDETVLAKGRVERIGLDSAILTHEPEGKTEVREVSEILEH TTAIKKVLDKLVHKEHGVLQSVHEIDAVGHRIVHGGEAFSSSVVVTEEVKKEIKRLFDLA PLHNPAHMLGINAVEANMGDVPQVVVFDTAFHQTMPSHAYMYAIPKIWYSKHKVRRYGFH GTSHQYVSERAARFLDRPLEELKIVSAHIGNGASCTAIQGGKSVDTSMGLTPLEGLMMGT RSGDLDPAVVTFAMGKEDLSLNEVNSMLNKHSGLQAISGLSSDMREITEAMDSGDKNAKL AFDMYTYRLRKFIGSYAAAMNGIDVLIFTAGVGENSVILRKAVCEGLSYLGLELDSQRNI NGWGIEKRISTDDSKVEVLVIPTNEEWMIARDTFELVNQLHEAKR >gi|333604565|gb|AFDH01000109.1| GENE 136 145857 - 146729 892 290 aa, chain - ## HITS:1 COG:CAC2708 KEGG:ns NR:ns ## COG: CAC2708 COG1250 # Protein_GI_number: 15895965 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxyacyl-CoA dehydrogenase # Organism: Clostridium acetobutylicum # 4 285 2 282 282 248 47.0 1e-65 MQYKKIGVIGGGTMGQGIAEMLAAKGLEVVLVEKDIERMEHSWAMIELSLDKQLEKWAIT GAEKKLILSRIHKTTDLKELPSCHMVIETISEDLDLKKSLFRKLDEICGPDLILASNTST LSLTELGASTKHPERVIGLHFIHPVAKIDLVEIIRGLKTSEDTYMLTRRFVEDVIQKTAI KVYESPGFVTSRLICLLINEAVHTLAERVASAEDIDLAMRKGYEFRHGPLEMADRFGLDS VLAALDRMFREFGELKYRPSFLLKQMVHAGHLGVKTGEGFFRYDKEGDRM >gi|333604565|gb|AFDH01000109.1| GENE 137 147173 - 148693 745 506 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 [Rickettsia canadensis str. McKiel] # 19 496 104 596 636 291 38 1e-77 MSKYGKEIAIGAAPVLFIFLAFIKVNIIPLLFTAALITAVLYMMKSRGGSGIGIGAGAGT RGKSRQPSYLSFDQIGGQERAKKELVEALDFLVKQEETKKLGIRPLKGILLTGPPGTGKT LMAKAAAHHTNSVYIAASGSEFVEMYVGVGASRIRTLFQEARTKAQKENKQNAVIFIDEI DVIGGKRDGGQQREYDQTLNQLLTEMDGIHTNTTPRILIIAATNRKEMLDPALLRPGRFD RHIDVELPDKKGRLSILKIHAQNKPLEEAADLEKIAEQTFGFSGAQLESVLNEAAIYALR GQQDNVMQKDLLAAIDKVMMGEQTDREATQEEKIRVAYHELGHAIIAELVRPDSVAQVSL RPRGKALGYVRHNPPQDQYLYSKEAIEDQIMIALAGAAAEEIIYGGRSTGSSNDFEKSID MVRTMISSGLTSLGIVDLKMVPQQKLLEVNNAILDELMARTKELLTKHRIVFEQSLDILL KEEVISGQQFRDLLEGSKRHLEPVLA >gi|333604565|gb|AFDH01000109.1| GENE 138 148690 - 149223 527 177 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_2246 NR:ns ## KEGG: GYMC10_2246 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 3 176 2 174 177 139 39.0 3e-32 MRKIRLLPVLLSVVITAFFLFGGWFAYQTYAIGKPLGNIVKETPGVDQSQVTYNDKEVSI RLSLKPDTSLREVYGRITKEGASTIGSRDVKLSVNTKESPDLDKWWAQALFDVAQAMETR HYADIPTALEKHKTDKDSNLVVKTEMDEQNVYVHLQKGDQHKYVVLPRNAEKVGVFK >gi|333604565|gb|AFDH01000109.1| GENE 139 149355 - 149858 760 167 aa, chain - ## HITS:1 COG:no KEGG:BcerKBAB4_1469 NR:ns ## KEGG: BcerKBAB4_1469 # Name: not_defined # Def: peptidase # Organism: B.weihenstephanensis # Pathway: not_defined # 2 156 1 157 167 63 32.0 3e-09 MLKKAIWIGLFVVLTSGFGINRFYVNVQATHWETNSEAVQAAYEKTTMTKANRVEAFHGA RSYEVVYGEDKLGNGLIVWVPLKQDGTGLAIDEIHTEMTAENVTEEAVRGIMAKKNPKLD ILRVNAGEFKGKYVWEVFYKDEQDRAFYDYYNLKTGALEDTFKLSLQ >gi|333604565|gb|AFDH01000109.1| GENE 140 149886 - 151184 1190 432 aa, chain - ## HITS:1 COG:BH1692 KEGG:ns NR:ns ## COG: BH1692 COG0402 # Protein_GI_number: 15614255 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Bacillus halodurans # 12 429 1 423 428 401 49.0 1e-111 MKKTIIINGLFVTGDAAAPVIEGCMVMEGNQLTYIGKDAPHPLETYDEVIRGDRKLYMPG LVNTHGHAAMTLLRGYGDDLALQVWLEEKMWPMEGKFTAQDVRYGTLLAILEMIKGGTTT FVDMYDHMNEVAQAVSDSGMRARLTRGVIGLCPADIQEAKLREAIAFAKDWNGAANGRIT TMMAPHAPYTCPPDYIERFVQAAHDLDLPIHTHMSETLKEVEANAEQYGARPVEHLEKLG VFTRPTLVAHGVHLTDEEIAVLAKYNVGVSHNPGSNLKLASGVARVPELLKAGINVSLGT DGAASNNNLDMFEEMRLAALIHKGVSGDPTAVPAAAALSMGTSMGARSIWLDDIGTLQPG MKADFIALDIDQPHFLPRTDYVSHIVYSASAHDVVDVCVDGSWIVRGRECLTLDEEKIKR EFESCFARLTSS >gi|333604565|gb|AFDH01000109.1| GENE 141 151425 - 152054 612 209 aa, chain + ## HITS:1 COG:BS_ykaA KEGG:ns NR:ns ## COG: BS_ykaA COG1392 # Protein_GI_number: 16078350 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate transport regulator (distant homolog of PhoU) # Organism: Bacillus subtilis # 8 207 3 203 205 122 34.0 7e-28 MASLFSSKRGDVDFLNLLIRAAENTLHASQMFRNAMMGDKIPENFFQMIKDIESKGDQIT HEIFKELNKVFITPLDREDIMELASKLDDVLDGIEATAARFDYLNISQTDKVMQEFSAVI VSSCQHMLDAFKLLSKKKYMQIPQHTVEINALENEADRLMREGIREIFITKRDPYEDFKL KELYERLEQTTDACEDVANILESVVLRYS >gi|333604565|gb|AFDH01000109.1| GENE 142 152078 - 153091 1080 337 aa, chain + ## HITS:1 COG:SA0619 KEGG:ns NR:ns ## COG: SA0619 COG0306 # Protein_GI_number: 15926341 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate/sulphate permeases # Organism: Staphylococcus aureus N315 # 15 336 14 335 335 296 54.0 5e-80 MTTTVLITLIAIVFLALAFDFINGFHDTANAVATSISTRAMSPKVAIISAACLNFVGALY SSEVAKTIGSGIADPSKINHGEFIVIAALLSAIIWNLATWYYAIPSSSSHTLIGSIVGAV LAGAGADFVKWGGLGKIVLILVLSPIVAFVAGYIIMTIIKYLVILTGNKSRSKLNRVFKF FQILSAWLLSFSHGGNDAQKAMGIIVFGLVAAGAQTTMDVPLWVKIAAATAMGLGTSIGG WKIIKTISKNLIKIEPINGFASDLTSSIVIQTSTHMGMPLSTTHVISSAIIGSGSVLRFH EVKWGTVTRMIITWIITIPISIILSYVLYTVLFKFFV >gi|333604565|gb|AFDH01000109.1| GENE 143 153192 - 153815 674 207 aa, chain - ## HITS:1 COG:lin2178 KEGG:ns NR:ns ## COG: lin2178 COG2344 # Protein_GI_number: 16801243 # Func_class: R General function prediction only # Function: AT-rich DNA-binding protein # Organism: Listeria innocua # 2 205 4 207 215 178 40.0 8e-45 MKSLKISEAVVKRLPIYLRFLNELSKKNVLTVSSQDLGQKLNLNPAQIRKDLAYFGEFGK KGIGYDVTYLIEKIRQILKLDRQIPVALVGAGNLGRALCNYNIYLRDQMKITAIFDSSPD KIGQVINNMSVLPMEHLADVIRDSSIRIGIITVPAPEAQNVANQFVKAGIEAILNFAPSI LKVPEEIRVHHADFTAELQSLAYYLPE >gi|333604565|gb|AFDH01000109.1| GENE 144 153802 - 156675 2475 957 aa, chain - ## HITS:1 COG:BH1691_2 KEGG:ns NR:ns ## COG: BH1691_2 COG1199 # Protein_GI_number: 15614254 # Func_class: K Transcription; L Replication, recombination and repair # Function: Rad3-related DNA helicases # Organism: Bacillus halodurans # 231 949 5 716 716 492 38.0 1e-138 MKFAVLDFETTGTGPADDIIQVGLVIIDDMEVTDRYTSLVNPGISIPSSITELTGITDEM VEHAPKVDDIMAEMYPLLFDCVLVAHHASFDLGFLQRALRKTGYPDFTGRVLDTIDMLRI VFPSLPTYQLGMVASAFGIEHERPHQADSDADVTAEIWTMSLDRLLSLPLLTVQRLAQIL PAETSDLGWFMSEIARFKEQQTPLDQSIHQYYRQFALNVQDWGEEDPVRDENDVLELSDS FEDVYDQVKEALKAKFEHFESREAQEIMIHEIEEAFQNDRHLMIEAGTGTGKSLGYLIPS LYYGIKHDEKVVVSTHTINLQEQLRERDIPLLHDIFPVNFKASVLKGRSHYLCLRKFENR ISMQEFDTGKEDAITAAQMVVWLSQTQTGDEEELHFGNKGAAFWHTVSSDAESCQNRHCP WFKKCFYHRARHDANNSDVVITNHSLLFTDMKAENRVLPAYKHLVLDEAHHFEEVASKHL GKELHYLGLTNQLLWLFKDSRNGQLPALRMKLQRYDDDYRAATWMNGIDNLFPKTLLIKE AWDLLCEKFYELLQTNSEPGQVDPGSLVMRLKKDSLPPNWSDFTDLEEILEQHIQEVYKS VDSLVQDLKEVQEEYDVQSFVTDLGGVAKELQAAKETLRFFMKMADDNFVYWVEAGTYNK SRSINLISVPMDVSPLIREHFFDNKESVILTSATLSVNKSFQYSADQLGLKLPAEEEENP KLKTVQLPSPFQYRQQALVCIPRDFPMIRGRSGEEEFLKALTESLSEVAVATRGRMLVLF TSNRMLKLAHAVLKENLRPHGIHVLGQGVDTGNRSKLTRLFQEHKACVLLGTSSFWEGVD IPGEALTCLAIVRLPFQPPNHPLVEAKSENLKKRNQNPFMKLSVPQAVIRFKQGFGRLVR RASDKGIVLIYDTRVIETQYGKHFLYSLPGPKIEHMPVERIVPRIQEWMGENSLEVT >gi|333604565|gb|AFDH01000109.1| GENE 145 156795 - 157433 555 212 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_2241 NR:ns ## KEGG: GYMC10_2241 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 201 1 180 209 119 37.0 8e-26 MFKHLFATMNEVLDEILLQLPNAKGALKAELEDELGALKAISDDCIEHWLLFEEKLGKTL SVGNASVPSSSASASDSNQQPDLPQSAEEAQPHPAEGKEAVEFIRGQGFYMLLMYEQATR EFEALLMREPDFLLARAYLAMGYLRQGDNEEAARHFTLLLALTENKQMKAISYNAMGCIQ FQNRNLEQALEYFKKAYHADPDCLELFSASNE >gi|333604565|gb|AFDH01000109.1| GENE 146 157524 - 157907 436 127 aa, chain - ## HITS:1 COG:BS_panD KEGG:ns NR:ns ## COG: BS_panD COG0853 # Protein_GI_number: 16079298 # Func_class: H Coenzyme transport and metabolism # Function: Aspartate 1-decarboxylase # Organism: Bacillus subtilis # 1 127 1 127 127 180 73.0 5e-46 MFRTMMKAKIHRATVTEANLNYIGSITIDEDLLDQVDMLPNEKVQIVNNNNGARLETYII PGPRGTGVICLNGAAARLVQTGDTVIIISYAMMTEEEARRHKPTVAIMGENNKVAQLLKE EMHATVL >gi|333604565|gb|AFDH01000109.1| GENE 147 157912 - 158793 889 293 aa, chain - ## HITS:1 COG:BH1688 KEGG:ns NR:ns ## COG: BH1688 COG0414 # Protein_GI_number: 15614251 # Func_class: H Coenzyme transport and metabolism # Function: Panthothenate synthetase # Organism: Bacillus halodurans # 8 293 12 283 283 271 54.0 1e-72 MEVIQSIALLRSTLEQKKSGLGAALKAPVGFVPTMGYLHEGHLSLIKAAREASEIVVLSI FVNPLQFGPTEDLDRYPRDTERDLKLAEEAGVDIVFLPQVEEMYPGPVKTTVSVSGITSV LCGASRPVHFDGVTTVVAKLLNIVQPDKAFFGLKDAQQVAVVSQMVQDLNMNVDIVACPI LREEDGLAMSSRNVFLSEEERRQALVLSRSLKAAEAWVREHVAFRAEDLRGAVKAVIEEA PLADIDYVEVLTYPKLERPEAVEAGVPVQLIVALAVKFGATRLIDNTILTLGK >gi|333604565|gb|AFDH01000109.1| GENE 148 158833 - 159693 1012 286 aa, chain - ## HITS:1 COG:BH1687 KEGG:ns NR:ns ## COG: BH1687 COG0413 # Protein_GI_number: 15614250 # Func_class: H Coenzyme transport and metabolism # Function: Ketopantoate hydroxymethyltransferase # Organism: Bacillus halodurans # 9 285 3 278 279 279 52.0 5e-75 MAQERKPMTTVKLQKMKASKEPISMVTAYDYLTAKLADEAGVDMILVGDSLGNVIQGHES TLPVTLDEMIYHAKTVTRAVKSAFVVTDLPFMTYHGSLDTTLQNAGRIMREGLSKGVKME GGAEIAHAVKALTQAGVPVVGHLGLTPQSVHVLGGYRVQGKNSEQARKLMEDAKALEEAG AIAIVLELVTEELAEWITSKLSIPTIGIGAGASCDGQVLVFHDMLGYEPDAPAKKFVKAY AQVGLAIRDGIGQYVAEVKGRKFPAEQHSFKGDNEVLQYLYGTAVK >gi|333604565|gb|AFDH01000109.1| GENE 149 159985 - 160959 860 324 aa, chain - ## HITS:1 COG:BS_birA_2 KEGG:ns NR:ns ## COG: BS_birA_2 COG0340 # Protein_GI_number: 16079301 # Func_class: H Coenzyme transport and metabolism # Function: Biotin-(acetyl-CoA carboxylase) ligase # Organism: Bacillus subtilis # 80 323 2 244 245 229 45.0 6e-60 MAVRERIVDLFRSNPGVYLSGEQISRELGCSRTAVWKHIESLRQDGFQFEAVTRKGYRLM EEPDKLRKAHIEEALRTRFMGRQIEVREAVDSTMNEAHRLVAEGAEEGTLVFAEEQISGR GRMGRHWHSPKGKGIWMSLILKPRVPVYFVPQLTLLTAVALCRAIRKECGVEVGIKWPND LLVKGRKVSGILLEMSGEDERLKYVIIGVGITANLTGADFPEELKPVATSLALESGSPVK REAMIAAFLNELEQLYDLYLENGFAPIRIMWEAMSVSLNCPIRVKTSQGTVEGRADSLDD SGALTVIADDGRKVKIYSGDVELR >gi|333604565|gb|AFDH01000109.1| GENE 150 160963 - 162471 1079 502 aa, chain - ## HITS:1 COG:lin2019 KEGG:ns NR:ns ## COG: lin2019 COG0617 # Protein_GI_number: 16801085 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA nucleotidyltransferase/poly(A) polymerase # Organism: Listeria innocua # 15 290 11 278 393 213 43.0 8e-55 MEEKNRTMIEEGRRVLERLRSRQHEAYFVGGFVRDFVLERPVKDVDIATSAKPEEVMEAF SKTVPTGLQHGTVTVLTGDYSFEVTTFRKETEYEGFRRPAEVEYITDLEEDLKRRDFTMN AMAMDAEGNLIDPFGGQSDMDRGVLRCVGEAAERFGEDALRMLRCIRFAAEYGLDIEEAT WLALLRQAPLLRHIAMERVRAELQRMVGGADPARAAALLLASGLWRHAKTPLALPFAAWG HPHAQTVIAHLSSIPAEEDRWAVLLLLIGSQQPEAVRAELRALTFPGEDIARLTRILAVH AQLQRGDAEAAAVRPRPEAQPSAEERAAARFKLAVLAHGKEAARGWLRAAGLLRAAWRRQ AGAGAGLPEQDAPPSANPAQPGQAVPHRTYDPYEASGELTMDEEIHTAAGEACLEELFRF MTEEAAVYLENGEPWIHVMPVYGVKDLAVGGSDLMAQSGQKAGPWIGETLNLLLERVALG QLENTKEILMTEAFRPTEMRDE >gi|333604565|gb|AFDH01000109.1| GENE 151 162506 - 163684 1244 392 aa, chain - ## HITS:1 COG:BH1683 KEGG:ns NR:ns ## COG: BH1683 COG0438 # Protein_GI_number: 15614246 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Bacillus halodurans # 4 374 2 373 375 435 56.0 1e-122 MKDKLKIGITCYPTLGGSGVVATELGKLLAEKGHEVHFITHSMPFRLGKFHRNIYYHEVE VSDYYVFRYPPYDLSLASKLAQVAQMQKLDLLHVHYAIPHAVCALLAKQMVGPDLKVVTT LHGTDITVLAQDQSISDLIRYAINESDAVTAVSNDLIAETRETLDISRDIDLTYNFVDKR VYYPRDVKSLRKEFARDDEKILLHISNFRPVKRVTDVVDIFKRVSEKIPSRLLFVGEGPE LSKVISYVKELGLSDRVNFCGKQDDVAQLISLGDVMLLPSEKESFGLVALEAMACGVPTV GSIAGGIPELVTHGETGFLAEIGDTEKMADYAVELLSDPQEYEKMSAACLNRARTTFCND WITMQYEEIYYRVLGRELPPSHRVDKQVCAER >gi|333604565|gb|AFDH01000109.1| GENE 152 163687 - 164403 744 238 aa, chain - ## HITS:1 COG:BH1682 KEGG:ns NR:ns ## COG: BH1682 COG2120 # Protein_GI_number: 15614245 # Func_class: S Function unknown # Function: Uncharacterized proteins, LmbE homologs # Organism: Bacillus halodurans # 1 233 1 230 231 209 47.0 4e-54 MQTVDILVFGAHADDAEIGMAGTILKHTRAGYTVGLCDLTRSEMSSNGTPENRLEEANKA AEAMGIVLRSNLGLPDRGLSAGSKDQIDAITKEIRLRKPRIVFAPYWEDRHPDHIACSHL VQEAVFNAKLRRYLPETEAFQVESLFFYFINDTIDPDIVVDVSDAYPGKKEVLQAYRSQF SPPQVGEDIVLTPLNQNYVERVEARDALLGQKRMMAYAEGFMSKLPVALQYFLSKKGT >gi|333604565|gb|AFDH01000109.1| GENE 153 164403 - 164825 424 140 aa, chain - ## HITS:1 COG:BH1681 KEGG:ns NR:ns ## COG: BH1681 COG1803 # Protein_GI_number: 15614244 # Func_class: G Carbohydrate transport and metabolism # Function: Methylglyoxal synthase # Organism: Bacillus halodurans # 3 133 1 131 138 189 67.0 2e-48 MSLNIALIAHDRKKDEMVNFVTAYEKVFDGNQLFATGTTGQRIMENTSLTIHRFMSGPLG GDQQIGAMVAKNEMDLIIFLRDPLMAQPHEPDIIALLRLSDVMGIPVATNIATAELLVRA LDRGDFAWRELVHKYKPGEA >gi|333604565|gb|AFDH01000109.1| GENE 154 164942 - 165748 721 268 aa, chain - ## HITS:1 COG:BH1680 KEGG:ns NR:ns ## COG: BH1680 COG0289 # Protein_GI_number: 15614243 # Func_class: E Amino acid transport and metabolism # Function: Dihydrodipicolinate reductase # Organism: Bacillus halodurans # 5 268 1 264 264 272 53.0 5e-73 MTQEVIKVAVAGASGRMGREVVKMVLGDSSLKLVAAVDRSSGPVDAASLVGLPDCGVKMS NDLELALVEGKADVLVDFTGPQSAVANTALAIRHGVRPVIGTTGFTTQDIEELDKQCKDK KIGGLIAPNFSIGAILMMKFASQAAKYFPHLEIIEYHGDQKLDAPSGTSVKTAELISQNR EEFRQGNPKEEEQLEGARGAYYNGFRIHSVRLPGVFAQQEVIMGAYGESLKIRHDSYERA AYMPGVNKAVHKVMTYEGMIYGFEHFID >gi|333604565|gb|AFDH01000109.1| GENE 155 165782 - 166303 580 173 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_2438 NR:ns ## KEGG: Pjdr2_2438 # Name: not_defined # Def: tetratricopeptide TPR_2 repeat protein # Organism: Paenibacillus # Pathway: not_defined # 1 172 1 170 180 119 44.0 5e-26 MDGEQEIQKAYEAILNNDFEEAIAWFEKAVLSEPGNASYHYKLSITYARSGKLAKAIDHA VDAYDLEPESEAYQYHLTTLKAKALIAEADKCLDQSRDREQLKNAIVLLKQAAALDPLSA EACLKLAAAYAGVSDFDLAVHAAEEAIRLEPLNKAAAALLVEYRRKLRQYLKP >gi|333604565|gb|AFDH01000109.1| GENE 156 166359 - 166697 416 112 aa, chain - ## HITS:1 COG:BS_ypjD KEGG:ns NR:ns ## COG: BS_ypjD COG1694 # Protein_GI_number: 16079307 # Func_class: R General function prediction only # Function: Predicted pyrophosphatase # Organism: Bacillus subtilis # 1 106 1 106 111 148 68.0 2e-36 MAERSMKDLQQEVDTYISQFKEGYFSPLAMLARMSEEVGELAREVNHQFGEKPKKASEEE NSIELELGDILFITICFANSLGIDLTEAHDKVMKKFNTRDADRWTKVNTDSD >gi|333604565|gb|AFDH01000109.1| GENE 157 166872 - 167303 352 143 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKRLYSFSLCVMMFLAVCGTCIAQSADRGIHGEPGTLGYPDNKPSSYGTQRIKSGISGST GTADPAEYSNGGVGTSLPQPPRDPIPKPGDYPPSKKYNVNLMPFDSKVSESARRDDPDWD WLGFIGMLGLAGFIGKYRKKDFY >gi|333604565|gb|AFDH01000109.1| GENE 158 167381 - 167548 94 55 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MAVPNAIGKNCFKYGIVFSFKAIAIGFSSFPDLPLITNPIVMKFESVVIRAPQAT >gi|333604565|gb|AFDH01000109.1| GENE 159 167475 - 168353 981 292 aa, chain + ## HITS:1 COG:BH1678 KEGG:ns NR:ns ## COG: BH1678 COG1284 # Protein_GI_number: 15614241 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus halodurans # 14 292 8 282 290 253 46.0 3e-67 MAMALKEKTMPYLKQFLPIAFGTAIFSFGVHYFVIPNELMEGGLTGISLLLHYIFLLPPS ATTLVLNVPLFYLGWRHFGSKAMVYTIFGSLSSSFFLWVMEIMIGKGWIIPFATKQDYLL AALYAGFTIGLGLGIVFRFGGTTGGSDILAQLGNKWKGWSVGQVILLIDLIVIGTSLLYI PKEKVLYSLVSVFIGSKMIDYITEGSHSAKAFTIITNEAEKVSQAIQKELDRGVTLFPAK GAFSRQEKEVVYCVVYRQEMRRLKELVKSIDPTAFIIINEVHEVLGEGFKVD >gi|333604565|gb|AFDH01000109.1| GENE 160 168350 - 169219 638 289 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_2228 NR:ns ## KEGG: GYMC10_2228 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 27 273 33 272 285 122 31.0 2e-26 MLFSSCRRIIGLLGAWAIFTSAAVGCAPAPKEAVPAASMTPVQMKTAESLNEAAEQLYKL SEQGKTTEARIELEQLGELATKLTYDGSITIEGLHALTETITEAKKTYASVSFSQDEGRF AAAKIRLAADALTHRGQPMWLQYYKLIKDDLKRIETNVAARKKLEALLDYNKLYRHMSTI RPALLISRAPAEVAKLDSLLVFMRKGLGAPTLDKPNLLQASEEFGKTIDGIFGRSDREAF LPLPDTQEPIFWSLGVGAFIIGVLLFAGWRMFRLKPGYDTVRNKKREGF >gi|333604565|gb|AFDH01000109.1| GENE 161 169263 - 169922 798 219 aa, chain - ## HITS:1 COG:BH1675 KEGG:ns NR:ns ## COG: BH1675 COG4347 # Protein_GI_number: 15614238 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Bacillus halodurans # 8 204 5 186 202 117 40.0 2e-26 MRNNATLHQALTLLRSRPMLWLLFWINALGTVYGYYWYKYQLMDTYDFEPVWYLPFVPDS PTASLFFTLTLLYLLRDERTNGVGLGKRSLLRGFIETFGLVTSFKYGIWAVAMIWSGYAL GDPVAWQDWMLTLSHLGMAIEVLLFASVMTYSVPAVFLVTVWVFANDWMDYTKGIFPRLS EVLMPHLDTIQWFTIGLSAAGILAALAYLPYQKHRHRKV >gi|333604565|gb|AFDH01000109.1| GENE 162 170024 - 170914 826 296 aa, chain - ## HITS:1 COG:BH1674_1 KEGG:ns NR:ns ## COG: BH1674_1 COG1290 # Protein_GI_number: 15614237 # Func_class: C Energy production and conversion # Function: Cytochrome b subunit of the bc complex # Organism: Bacillus halodurans # 6 130 2 128 128 163 61.0 4e-40 MAHGQKDGEKVVYVGDSRVKKTVKNTVPPDYSSYPGKSEAFIPNFLLKEWMVAVVFLVGV LCLVISEPAPLGYPADPKNTSFIPIPDWYFLFMYQLLKYPYTSDQYVVIGTLIVPGLMFG GLLLAPFLDTGKERRFYRRPIASSLALLTLIASAYLTYTSWHHYQLELKATNTIPEHIKR EEEMKEKKAAGGAASGGGGQQQKAAGVVAADDPAAEIYKKATCVSCHVADLKGMPNNGIP ALRGVGDKHDKEQIMNIIKNGQGAMQPQYKDNIAKGLTDADLDKLADWLAKQKKAQ >gi|333604565|gb|AFDH01000109.1| GENE 163 170935 - 171606 502 223 aa, chain - ## HITS:1 COG:BH1673 KEGG:ns NR:ns ## COG: BH1673 COG1290 # Protein_GI_number: 15614236 # Func_class: C Energy production and conversion # Function: Cytochrome b subunit of the bc complex # Organism: Bacillus halodurans # 1 223 1 223 223 353 79.0 1e-97 MFKNMYNWIDERLDITPIWRDVADHEVPEHVNPAHHFSAFVYCFGGLTFFVTVIQILSGM FLTMYYTPDIINAYASVDYLQHQVAFGVIVRGMHHWGASLVIVMMLLHTLRVFFTGSYKA PREMNWVVGMLIFFVMLGLGFTGYLLPWDNKAYYATQVGIKIAASIPFLGQYVQTFLQGG DIVGAQTLTRFFALHVFFLPAALLALLAGHFLMIRRQGISGPL >gi|333604565|gb|AFDH01000109.1| GENE 164 171625 - 172170 350 181 aa, chain - ## HITS:1 COG:BS_qcrA KEGG:ns NR:ns ## COG: BS_qcrA COG0723 # Protein_GI_number: 16079313 # Func_class: C Energy production and conversion # Function: Rieske Fe-S protein # Organism: Bacillus subtilis # 18 173 4 160 167 177 50.0 1e-44 MSERNNSNEHHGKKPVVRRQMSRRQFLSYTLGGTTAFMAAGMVAPMLRFAVDPVLQPKKA SDWIKVVEEAKITNEPTSFTFQVHQVDGWYESDVELTAWITKGQDGKIFALNPTCKHLGC TVNWNNNPEYKNQYFCPCHGAHYTADGKNLAVAPAPLDEYDVKIDKGFVYLGQLHANTRA K >gi|333604565|gb|AFDH01000109.1| GENE 165 172425 - 172874 418 149 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_2430 NR:ns ## KEGG: Pjdr2_2430 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 1 140 27 160 165 127 46.0 1e-28 MKFSEITEKDWTDLQPYLDTCLLPVTGLGGAEQPWEAGDALESLRDVLDVLEIPYKGRVV TYPALHYCTSEDTDREYVETTCGQLRKVGFAYIVVVTAHPEIGAWQLQNADLIVYTTPEA LQYPGQEAKKAIGERIEQLWFSKKSEEIR >gi|333604565|gb|AFDH01000109.1| GENE 166 173082 - 173270 220 62 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGRMNVSNEALLGLIAELVMDDAMRKYKENHLYQQIDSALAEGDEATFLALTAELKSIQS PG >gi|333604565|gb|AFDH01000109.1| GENE 167 173325 - 173840 447 171 aa, chain - ## HITS:1 COG:BH3289 KEGG:ns NR:ns ## COG: BH3289 COG0663 # Protein_GI_number: 15615851 # Func_class: R General function prediction only # Function: Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily # Organism: Bacillus halodurans # 1 166 1 166 174 180 51.0 1e-45 MLHPFKGLFPAIASSVYIAPGVQIIGDVSVGEDSTIWFNAVLRGDLAPIRIGNRCNIQDG CIGHVNMDQPLILEDDVSVGHGALIHGCRIGRGTLIGMGAIVLNGAEIGEYALVGAGSLV TEGTILPAYTLSLGTPAKVVRELTPQDLERMKRTTDNYVSKGREYRMEPGK >gi|333604565|gb|AFDH01000109.1| GENE 168 173942 - 175057 1195 371 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_2428 NR:ns ## KEGG: Pjdr2_2428 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 1 369 1 392 393 365 45.0 3e-99 MNLADMLSYADIHDLNRIADTYACECNMHSKNELIQSILTTVGRRDIFEERVDALTMEDI RFLNTLLFEERGLFSLEELVARVQQAKFLKEEKENSNPRDTISKFKKHGWLFHGYSQQTK YLFQVPHDLKRRFGDVLTRNYKSRLTYTNDPAVYREEHTLMADDVLQLMRYIRDHEVLLT HEDVMYKRQLSQILGGMAVKEELVGKTAWRFGYGRKFKEYPNRFSLIYDYCFFQGLLQER GGLLLLTEKGAEMTDAGIRPGQDDLYRFWLRLYKGPVYNLQSIVQWTARLAGNWVTTASL AEVLCPLIRPFYYDSPESIFEQRIIAMMMHLGLLAVGEEEHAGAVVRITSLGGKTIAGNQ IAEEDKIDLKE >gi|333604565|gb|AFDH01000109.1| GENE 169 175230 - 175805 449 191 aa, chain - ## HITS:1 COG:BS_yhfR KEGG:ns NR:ns ## COG: BS_yhfR COG0406 # Protein_GI_number: 16078098 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Bacillus subtilis # 1 189 1 188 193 112 36.0 5e-25 MTTIGLIRHGSTEWNLLGKIQGALDTELTEEGREQARRLGTRLRGEAWDGIISSDLKRAK ESAQLISERSGIPIAGTDSRLREKGFGLVEGTTLQERLDRWGPDWLRLELGGETDEQVRS RWLSFYADLCVNYPRGRMLIVSHGAFIGRALETMKLERPGDPLTNASLTIVRQGTAVWEC TLYNCTEHLIV >gi|333604565|gb|AFDH01000109.1| GENE 170 175870 - 176502 369 210 aa, chain - ## HITS:1 COG:no KEGG:BBR47_24840 NR:ns ## KEGG: BBR47_24840 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 1 208 2 216 216 69 25.0 8e-11 MKCEDVQEWLLEYIEGTASELRRQAVRVHSDSCKRCSDQFNSWQECRDLIRLSLRTDTPV PRVSIADSVMQRIGAYEPWRYPAEAGAAASSGHARKFRSAGRLAASFCLLLFVGVLLCLS LNSSPSFLGKGVSSGYEHAYAGSPGMDAASASAMNGRTMKHAVAGLNVSAVMPSRSTFVL PPYVHHLIALSLLGLFVSFLFHAWIGRGKR >gi|333604565|gb|AFDH01000109.1| GENE 171 176499 - 177095 470 198 aa, chain - ## HITS:1 COG:PA0762 KEGG:ns NR:ns ## COG: PA0762 COG1595 # Protein_GI_number: 15595959 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog # Organism: Pseudomonas aeruginosa # 3 181 7 188 193 97 33.0 2e-20 MTDTQLIREVKDGNVGKYNELMHRYERKIFVFIYHMLKSAQLELMAEDLCNETFYKAYRS LSSFREAEASFSTWLYTIARNTVLSEMRKHKIVKISLDNCGHTPQTSFESLPEQTVIRKE KVSMVRIAINSLPEKQRSALILREYDQLDYQEIASILGQTVSSVKSLLFRARASVKLQME PYYNTDNWLEECEGMTRR >gi|333604565|gb|AFDH01000109.1| GENE 172 177542 - 178630 907 362 aa, chain - ## HITS:1 COG:BH1666 KEGG:ns NR:ns ## COG: BH1666 COG0287 # Protein_GI_number: 15614229 # Func_class: E Amino acid transport and metabolism # Function: Prephenate dehydrogenase # Organism: Bacillus halodurans # 3 357 5 359 366 315 42.0 8e-86 MTTISIFGVGLIGGSLALCFKGKPDITVIGHSNNPTSVENMVKRRIVDEGTTSMQAAAEA ADIIFLCVPVGALESYLERLKQFSLKKGCLITDVGSTKLSVVQCAEKLRFKDAYFIGGHP MAGSERSGMEAASSHLFENAFYVLTPGTDTPVAEVERLAKLLAYTQAQIIRVDAREHDDI VGAISHLPHMIAVALVNQIRTYNESNELYKNLAAGGFRDITRIASSDPFIWRDILINNRT VLLKLLDDWDQQISVFRELLEKEDGEGIQKQFEVAGTFRKQVPDRRKGMLTPLYDIYADI PDHPGMIGQIATLLGKHRLNLSNLQIIESRLDVPGVLRLSFRDQETADRASALLSEQFSI HV >gi|333604565|gb|AFDH01000109.1| GENE 173 178656 - 179756 1118 366 aa, chain - ## HITS:1 COG:BS_hisC KEGG:ns NR:ns ## COG: BS_hisC COG0079 # Protein_GI_number: 16079319 # Func_class: E Amino acid transport and metabolism # Function: Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase # Organism: Bacillus subtilis # 1 359 1 360 360 374 51.0 1e-103 MRPKQQVTKLPVYQPGKPIDEVKRELGLTHVIKLASNENPFGFSPKAKEAILADLDNLTL YPDGAGAEVTRAVAGHYGVNADQLIFGAGSDDVILMIARAYLVPGDETIMATHTFPQYKH NAEIEGAVSVEVPLKEGKHDLDEMLRRVNERTKIVWICNPNNPTGTIVTGQELEAFMNKV PSDVMVALDEAYYEYTTDEAYPDSLDLLNRYPNIVILRTFSKIYGLASLRIGYGIGHPDV IRTINQVREPFNTTRLAQAAAAAAIRDQDFVEQCRRLNREGVAYLLGEFQRLGLYSYPAH GNFILVDIGRPSGPVFDELLRHGIIVRSGEKLDFPTMLRVTVGSREQNEAFVHALELVLH GAVQES >gi|333604565|gb|AFDH01000109.1| GENE 174 179807 - 180028 226 73 aa, chain - ## HITS:1 COG:BH1664 KEGG:ns NR:ns ## COG: BH1664 COG0159 # Protein_GI_number: 15614227 # Func_class: E Amino acid transport and metabolism # Function: Tryptophan synthase alpha chain # Organism: Bacillus halodurans # 3 64 201 262 265 62 50.0 2e-10 TDLPIAIGFGISNREQVERFEKTCDAVVVGSAIVRRIGEQEHRLQDESTKQDALKQIGEF VRDLKGASFQTQS Prediction of potential genes in microbial genomes Time: Sun Jul 17 10:11:39 2011 Seq name: gi|333604563|gb|AFDH01000110.1| Paenibacillus sp. HGF7 contig00236, whole genome shotgun sequence Length of sequence - 1029 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 1027 631 ## COG1020 Non-ribosomal peptide synthetase modules and related proteins Predicted protein(s) >gi|333604563|gb|AFDH01000110.1| GENE 1 1 - 1027 631 342 aa, chain - ## HITS:1 COG:BS_ppsC_2 KEGG:ns NR:ns ## COG: BS_ppsC_2 COG1020 # Protein_GI_number: 16078893 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Non-ribosomal peptide synthetase modules and related proteins # Organism: Bacillus subtilis # 1 342 850 1195 1505 289 43.0 6e-78 VKIRGFRIELGEVENALRQLEGIQEAAVIVRKTHDGENALFAYLISKDIVQLQAVRRDLE EVLPAYMVPAYMMQIEQLPVTRNGKLDKRALPEIVAVSEKEYTAPKNELEAQLCTIFSEV LGVERVGTQDSFFELGGDSIKAIRIVSKLRSAGYHIAIKDIMQKYTVEAISYAAQKSALA EQYEQDEVSGIVPLTPIVREFASWNLPKPHHFNQDMLMEIELEEEKQLREVLDALTAHHD MLRSVYREGQLEIVKVSDSKAYELKVYDYSEEQAATELMEAACTDLHSSIHLEEGPLVKA AMFRTAAGNLLFLGIHHLVVDGVSWRILQEDISTAVRQVKEG Prediction of potential genes in microbial genomes Time: Sun Jul 17 10:12:17 2011 Seq name: gi|333604439|gb|AFDH01000111.1| Paenibacillus sp. HGF7 contig00114, whole genome shotgun sequence Length of sequence - 136383 bp Number of predicted genes - 112, with homology - 101 Number of transcription units - 65, operones - 22 average op.length - 3.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 1 - 465 381 ## BPUM_0754 TetR family transcriptional regulator 2 1 Op 2 . + CDS 527 - 2398 1346 ## BBR47_51460 hypothetical protein + Term 2473 - 2524 12.0 - Term 2453 - 2515 8.6 3 2 Tu 1 . - CDS 2523 - 5459 1272 ## - Term 5797 - 5833 -0.9 4 3 Tu 1 . - CDS 5864 - 7348 1315 ## COG3119 Arylsulfatase A and related enzymes - Term 7462 - 7501 3.0 5 4 Op 1 . - CDS 7506 - 9311 1828 ## COG1874 Beta-galactosidase 6 4 Op 2 . - CDS 9361 - 9549 207 ## CPE0578 ABC transporter - Prom 9648 - 9707 3.7 7 5 Tu 1 . - CDS 9844 - 9930 126 ## - Prom 10070 - 10129 1.9 8 6 Tu 1 . - CDS 10568 - 10873 264 ## BBR47_15940 hypothetical protein - Prom 10951 - 11010 4.2 - Term 10960 - 10998 8.1 9 7 Op 1 . - CDS 11021 - 11782 835 ## COG0789 Predicted transcriptional regulators - Prom 11842 - 11901 2.6 - Term 11830 - 11871 -0.7 10 7 Op 2 . - CDS 11903 - 12493 653 ## COG0586 Uncharacterized membrane-associated protein - Prom 12548 - 12607 6.6 11 8 Tu 1 . - CDS 12873 - 13871 1101 ## COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases - Prom 14064 - 14123 2.9 12 9 Op 1 . - CDS 14377 - 16656 2346 ## COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain 13 9 Op 2 7/0.000 - CDS 16734 - 17612 1163 ## COG0395 ABC-type sugar transport system, permease component 14 9 Op 3 2/0.167 - CDS 17606 - 18571 1122 ## COG4209 ABC-type polysaccharide transport system, permease component 15 9 Op 4 . - CDS 18659 - 20251 1879 ## COG1653 ABC-type sugar transport system, periplasmic component - Prom 20477 - 20536 4.4 - Term 20519 - 20552 4.5 16 10 Tu 1 . - CDS 20617 - 21633 1214 ## COG1524 Uncharacterized proteins of the AP superfamily - Prom 21665 - 21724 5.3 + Prom 21629 - 21688 6.1 17 11 Op 1 . + CDS 21915 - 23669 209 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 18 11 Op 2 40/0.000 + CDS 23720 - 24397 884 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 19 11 Op 3 3/0.083 + CDS 24394 - 25467 926 ## COG0642 Signal transduction histidine kinase + Prom 25603 - 25662 3.3 20 12 Tu 1 . + CDS 25694 - 26653 555 ## COG2207 AraC-type DNA-binding domain-containing proteins + Term 26713 - 26756 -0.8 + Prom 26664 - 26723 4.2 21 13 Tu 1 . + CDS 26773 - 27759 865 ## COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component + Term 27782 - 27838 0.4 - Term 27770 - 27826 11.5 22 14 Op 1 . - CDS 28029 - 28940 732 ## COG0640 Predicted transcriptional regulators - Prom 29043 - 29102 2.0 - Term 29030 - 29062 -0.8 23 14 Op 2 44/0.000 - CDS 29107 - 30072 883 ## COG4608 ABC-type oligopeptide transport system, ATPase component 24 14 Op 3 44/0.000 - CDS 30069 - 31049 498 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 25 14 Op 4 49/0.000 - CDS 31055 - 31984 1031 ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 26 14 Op 5 38/0.000 - CDS 31997 - 32953 1235 ## COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components - Term 32962 - 32995 4.5 27 14 Op 6 . - CDS 33029 - 34753 1891 ## COG0747 ABC-type dipeptide transport system, periplasmic component - Prom 34836 - 34895 6.2 28 15 Op 1 . - CDS 35777 - 36256 496 ## Pjdr2_0257 hypothetical protein - Term 36272 - 36314 8.3 29 15 Op 2 . - CDS 36356 - 36526 191 ## - Prom 36569 - 36628 6.7 30 16 Tu 1 . - CDS 36749 - 37675 172 ## PROTEIN SUPPORTED gi|149913192|ref|ZP_01901726.1| 50S ribosomal protein L35 - Prom 37695 - 37754 2.4 + Prom 37680 - 37739 4.6 31 17 Tu 1 . + CDS 37836 - 38579 275 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 + Term 38650 - 38691 9.6 - Term 38810 - 38843 3.1 32 18 Tu 1 . - CDS 38995 - 39786 880 ## COG2116 Formate/nitrite family of transporters - Prom 39833 - 39892 4.0 33 19 Tu 1 . - CDS 39905 - 40456 352 ## COG1396 Predicted transcriptional regulators - Prom 40500 - 40559 5.7 34 20 Tu 1 . + CDS 40536 - 41261 437 ## COG1296 Predicted branched-chain amino acid permease (azaleucine resistance) - Term 41627 - 41678 14.0 35 21 Op 1 . - CDS 41710 - 42768 1128 ## COG0673 Predicted dehydrogenases and related proteins 36 21 Op 2 . - CDS 42776 - 43783 799 ## GYMC10_1209 xylose isomerase domain protein TIM barrel 37 21 Op 3 38/0.000 - CDS 43801 - 44625 1023 ## COG0395 ABC-type sugar transport system, permease component 38 21 Op 4 35/0.000 - CDS 44684 - 45637 1246 ## COG1175 ABC-type sugar transport systems, permease components 39 21 Op 5 . - CDS 45671 - 47026 1775 ## COG1653 ABC-type sugar transport system, periplasmic component 40 22 Tu 1 . - CDS 47300 - 49573 2221 ## GYMC10_3763 fibronectin type III domain protein - Prom 49697 - 49756 6.6 + Prom 49718 - 49777 7.0 41 23 Op 1 7/0.000 + CDS 49813 - 51930 1752 ## COG2972 Predicted signal transduction protein with a C-terminal ATPase domain 42 23 Op 2 . + CDS 51948 - 53006 1021 ## COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain + Term 53020 - 53065 5.7 + Prom 53140 - 53199 9.3 43 24 Op 1 . + CDS 53235 - 54272 955 ## PPE_04696 hypothetical protein + Term 54377 - 54419 5.0 + Prom 54431 - 54490 4.9 44 24 Op 2 . + CDS 54559 - 55020 512 ## STAUR_1444 hypothetical protein + Term 55091 - 55136 10.6 - Term 55079 - 55124 6.8 45 25 Tu 1 . - CDS 55168 - 55353 86 ## - Prom 55484 - 55543 6.7 46 26 Tu 1 . - CDS 55701 - 56156 300 ## BMB171_C2948 hypothetical protein - Prom 56380 - 56439 4.8 47 27 Tu 1 . - CDS 56457 - 56945 114 ## COG5444 Uncharacterized conserved protein - Prom 56995 - 57054 3.6 - Term 57265 - 57302 5.5 48 28 Tu 1 . - CDS 57328 - 57984 44 ## BCB4264_A3279 hypothetical protein - Prom 58031 - 58090 5.2 - Term 58151 - 58200 9.1 49 29 Tu 1 . - CDS 58220 - 58714 -83 ## - Prom 58744 - 58803 2.7 50 30 Tu 1 . - CDS 58849 - 58914 81 ## - Term 58943 - 58974 1.6 51 31 Op 1 . - CDS 58990 - 59718 -270 ## COG1357 Uncharacterized low-complexity proteins 52 31 Op 2 . - CDS 59729 - 60211 -90 ## BCB4264_A3290 hypothetical protein - Prom 60265 - 60324 3.2 - Term 61358 - 61413 13.6 53 32 Op 1 . - CDS 61589 - 62026 224 ## YpsIP31758_0669 hypothetical protein 54 32 Op 2 . - CDS 62032 - 64893 1719 ## PPE_03509 hypothetical protein 55 32 Op 3 . - CDS 64916 - 65305 320 ## PPE_03510 hypothetical protein 56 32 Op 4 . - CDS 65333 - 65821 330 ## - Prom 65841 - 65900 2.0 57 33 Op 1 . - CDS 65908 - 66456 608 ## Cbei_4392 hypothetical protein 58 33 Op 2 . - CDS 66453 - 67076 304 ## PPE_03512 pentapeptide repeat protein 59 33 Op 3 . - CDS 67085 - 68497 1270 ## PPE_03513 hypothetical protein 60 33 Op 4 . - CDS 68494 - 69093 618 ## PPE_03514 hypothetical protein 61 33 Op 5 . - CDS 69123 - 69899 532 ## PPSC2_c4015 protein 62 33 Op 6 . - CDS 69926 - 72577 2003 ## BBR47_44730 hypothetical protein 63 33 Op 7 . - CDS 72600 - 73289 390 ## BBR47_44740 hypothetical protein 64 33 Op 8 . - CDS 73286 - 74572 936 ## PPSC2_c4020 protein 65 33 Op 9 . - CDS 74569 - 76335 1460 ## COG0631 Serine/threonine protein phosphatase 66 33 Op 10 . - CDS 76386 - 77162 529 ## COG0631 Serine/threonine protein phosphatase 67 33 Op 11 . - CDS 77228 - 77617 340 ## BBR47_44780 hypothetical protein 68 34 Tu 1 . - CDS 77825 - 78412 475 ## BBR47_44790 hypothetical protein 69 35 Tu 1 . - CDS 78572 - 79003 263 ## COG2214 DnaJ-class molecular chaperone - Term 79125 - 79184 20.4 70 36 Op 1 . - CDS 79199 - 79624 545 ## BBR47_44810 hypothetical protein 71 36 Op 2 . - CDS 79744 - 81882 2036 ## BBR47_44820 hypothetical protein + Prom 82147 - 82206 7.1 72 37 Tu 1 . + CDS 82341 - 84395 1404 ## BBR47_44830 hypothetical protein - Term 84437 - 84469 -1.0 73 38 Tu 1 . - CDS 84488 - 85516 268 ## COG0515 Serine/threonine protein kinase - Prom 85572 - 85631 4.9 - Term 85605 - 85641 5.1 74 39 Op 1 7/0.000 - CDS 85691 - 86869 1442 ## COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain 75 39 Op 2 . - CDS 86866 - 89115 1995 ## COG2972 Predicted signal transduction protein with a C-terminal ATPase domain 76 39 Op 3 38/0.000 - CDS 89170 - 89994 899 ## COG0395 ABC-type sugar transport system, permease component 77 39 Op 4 35/0.000 - CDS 90009 - 90899 1146 ## COG1175 ABC-type sugar transport systems, permease components - Prom 90959 - 91018 1.9 - Term 90969 - 91003 5.1 78 39 Op 5 . - CDS 91021 - 92361 1579 ## COG1653 ABC-type sugar transport system, periplasmic component - Prom 92386 - 92445 4.9 + Prom 92504 - 92563 2.1 79 40 Tu 1 . + CDS 92602 - 93762 1317 ## COG0673 Predicted dehydrogenases and related proteins + Prom 93963 - 94022 3.0 80 41 Tu 1 . + CDS 94078 - 94935 693 ## COG2207 AraC-type DNA-binding domain-containing proteins 81 42 Op 1 . + CDS 95075 - 96175 1234 ## COG0673 Predicted dehydrogenases and related proteins + Prom 96185 - 96244 1.8 82 42 Op 2 . + CDS 96389 - 97249 951 ## Pjdr2_4947 xylose isomerase domain protein TIM barrel + Term 97268 - 97313 10.5 + Prom 97360 - 97419 3.8 83 43 Tu 1 . + CDS 97515 - 97880 170 ## GYMC10_3072 hypothetical protein + Term 97897 - 97942 1.3 - Term 97883 - 97928 5.1 84 44 Op 1 . - CDS 97979 - 99244 1006 ## Pjdr2_4900 hypothetical protein 85 44 Op 2 . - CDS 99309 - 100076 796 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - Prom 100284 - 100343 6.3 + Prom 100264 - 100323 5.8 86 45 Tu 1 . + CDS 100383 - 101237 728 ## COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain + Term 101274 - 101318 7.5 - Term 101259 - 101309 15.1 87 46 Op 1 . - CDS 101464 - 102564 808 ## COG1284 Uncharacterized conserved protein 88 46 Op 2 6/0.083 - CDS 102647 - 103888 1567 ## COG0475 Kef-type K+ transport systems, membrane components 89 46 Op 3 . - CDS 103893 - 104387 477 ## COG0490 Putative regulatory, ligand-binding protein related to C-terminal domains of K+ channels - Prom 104575 - 104634 4.1 90 47 Tu 1 . - CDS 104716 - 105075 278 ## - Prom 105100 - 105159 3.8 + Prom 105045 - 105104 4.6 91 48 Tu 1 . + CDS 105300 - 105992 808 ## COG0006 Xaa-Pro aminopeptidase - Term 105830 - 105866 -0.5 92 49 Tu 1 . - CDS 106025 - 106786 666 ## COG0561 Predicted hydrolases of the HAD superfamily - Prom 106813 - 106872 2.8 - Term 106889 - 106919 0.1 93 50 Tu 1 . - CDS 107157 - 108536 1271 ## COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs - Prom 108756 - 108815 6.7 + Prom 108710 - 108769 4.8 94 51 Op 1 . + CDS 108802 - 109443 767 ## 95 51 Op 2 . + CDS 109463 - 109912 534 ## + Term 109927 - 109973 12.2 - Term 109981 - 110021 8.0 96 52 Tu 1 . - CDS 110074 - 112038 2004 ## COG0584 Glycerophosphoryl diester phosphodiesterase - Prom 112238 - 112297 5.3 - Term 112322 - 112356 -1.0 97 53 Tu 1 . - CDS 112359 - 114119 1803 ## COG3469 Chitinase - Prom 114315 - 114374 2.8 - Term 114374 - 114408 2.1 98 54 Tu 1 . - CDS 114475 - 114759 355 ## COG2388 Predicted acetyltransferase - Prom 114782 - 114841 3.6 + Prom 114741 - 114800 5.9 99 55 Tu 1 . + CDS 114866 - 115096 66 ## PPE_00870 histone acetyltransferase HPA2-like protein - Term 115310 - 115347 4.6 100 56 Tu 1 . - CDS 115378 - 116340 1043 ## COG3595 Uncharacterized conserved protein - Prom 116400 - 116459 2.5 101 57 Tu 1 . + CDS 116552 - 116950 330 ## GYMC61_3016 hypothetical protein + Term 117087 - 117137 -0.2 - Term 117309 - 117348 7.3 102 58 Op 1 . - CDS 117367 - 118218 795 ## COG0451 Nucleoside-diphosphate-sugar epimerases - Term 118332 - 118384 7.2 103 58 Op 2 . - CDS 118389 - 120008 1529 ## COG0366 Glycosidases - Prom 120133 - 120192 9.1 + Prom 120289 - 120348 6.5 104 59 Tu 1 . + CDS 120573 - 122150 1896 ## COG3227 Zinc metalloprotease (elastase) + Term 122234 - 122274 7.3 - Term 122220 - 122262 6.1 105 60 Op 1 . - CDS 122328 - 122699 453 ## Clos_1646 hypothetical protein 106 60 Op 2 . - CDS 122743 - 123489 686 ## - Prom 123542 - 123601 4.2 - Term 123527 - 123557 0.4 107 61 Tu 1 . - CDS 123656 - 124201 -30 ## Micau_5230 hypothetical protein - Prom 124225 - 124284 7.3 - Term 124808 - 124844 8.0 108 62 Tu 1 . - CDS 124870 - 130353 5290 ## COG0584 Glycerophosphoryl diester phosphodiesterase - Prom 130531 - 130590 2.9 + Prom 130626 - 130685 4.9 109 63 Tu 1 . + CDS 130715 - 131125 565 ## Sgly_0991 hypothetical protein + Term 131212 - 131259 9.2 - Term 131209 - 131239 1.2 110 64 Op 1 . - CDS 131254 - 131742 543 ## PPE_04905 hypothetical protein 111 64 Op 2 . - CDS 131805 - 132674 570 ## COG2207 AraC-type DNA-binding domain-containing proteins - Prom 132744 - 132803 6.7 + Prom 132827 - 132886 5.2 112 65 Tu 1 . + CDS 132953 - 136222 3568 ## COG1404 Subtilisin-like serine proteases Predicted protein(s) >gi|333604439|gb|AFDH01000111.1| GENE 1 1 - 465 381 154 aa, chain + ## HITS:1 COG:no KEGG:BPUM_0754 NR:ns ## KEGG: BPUM_0754 # Name: not_defined # Def: TetR family transcriptional regulator # Organism: B.pumilus # Pathway: not_defined # 1 154 39 194 194 104 35.0 1e-21 VSKTNIYYHFKSKEELLGAVTERLVGRYEELIREAGSRSGLTIPQRIAAIGDLLMRGEDD FLGGCPFLTLYVQTSREAGFVRERIGRFFREQTVYLEALLAEGVRSGELRASLEPGPAAA LIVSGIEGALFLQHASPDSTYMQQVLPALAQLLK >gi|333604439|gb|AFDH01000111.1| GENE 2 527 - 2398 1346 623 aa, chain + ## HITS:1 COG:no KEGG:BBR47_51460 NR:ns ## KEGG: BBR47_51460 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 1 609 1 622 628 382 36.0 1e-104 MAHIFITGGTGFIGRHVLRALSLPGSWAPHQLTVLVRSLTRFHSFLHKEGLEHSPSIRPV KGDLSLPSLGLDDTGLELAGQADILLHMGGPMDIGLGPEEAESVFFRSSEEMVSLAKRVH QNRGLKHFIHLVGFKSPYHEKNADLPEHIGHPGEPPYENRKLAADLYIRRELYREGIPLS VVNPGVVIGDSATGVTEQTGGLGILVDSVRRGLMPLSPGGAGHWLPLVHADHSAAFIAAL VREEKPGNGTYFLLDEKSGSPDMRDLAGSIAKEVRVREPFGAMPLPLLTKALRTKWGRKT GIPAESMNFIADGDFPLASKQAVERKYKLVTGLNRDILPGTIADLDYRLSHGEAGLPDAG FKPGRLGKLAVWSRQEGSGIPVVLLHGTFSGAFPLLPAASRLTGHPAYAVDLPGFGRSPY HHGCDVIAGYVEAVTGALMELGQPVVLAGHSFGGLIAAKVMEQLPGYVRGAVLLQPALHA AHAGVPAWIAGTYMKRMTERKLVRKLLESGSFADEGEIPQEYVRYVLRDLASPRVRKTNA DVFAALGNAGVFGLSPGKWDTGKVRLVWGELDRQYRLPQAFRHLPVTQILAGHQFPISHP DRTAELILEHAGHCGSERTVREQ >gi|333604439|gb|AFDH01000111.1| GENE 3 2523 - 5459 1272 978 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKAAETFVAKMKNVPVFAQAGGEVTFQAQAQAPLDLFEEAGLAVRLQAIARLAAGIGLRP RMSVRDLTDAVGGLPDMKGAPMEMFQLLLGEITIQGEMHAQAAVAIMAYANLIASGTFLG NDGFGKPGFQYIFEAGYGFKVGGGYRAFVEVNFDNPRRLINRYAEAAIIKMIALAGQSTS PEQLALIRSLEAPVIIGARLAYEIGELPREQAGERSVAIIILEGQRWLLKRFLETGSNST VQWIANHLLTSLNKHMESKVSPYPFSGPLEVQVPPNIANDVNTQLGRSPGTPLSQTDLIA YLTGKPLQTLLSQSEETRLILNIFQTAFPGNPQTSAGAIFAYTGSNTNPSGLLAGLTSGL QAYAGQQLNTPAFKQAIQQVASGSREMGVILQNGLIPALEIAASVALPYVMNQGGYDRTF VREALSSALLTVVGRSLVRIFNGITMHIQGQLGGLLNGAANQLSSPAVVKLLELTGPTNR YLIRPLQAGFREAAVQLADFIPQRAFDQMLVIFTPIDAGSTASFVQNLRKTDWTPRAENL SDVANTLLNILLTRATTFTSKIIAVVLQAFLEVLLQELRDLIDKFGRILNEAWEALRNYI RTVLTEPLRRIIRELVGRAISNLPPRIQSLIAGGIDAAVNSLHPDAVLDPIMNGLSKVTL DPKKVLDTMTGQGNFPAFTDYLYQEILQQLQRSNLNLNLSIKVPIKLPGPLNGPAFTGGP AGFGGIGGGLGNLGGLGDAIGGLGDAIGDLGGILKGDESLGEALDKILKNAGLGELIPVP GGNPQIPFGVTLTPEHMVRAIREAVPVRILQSQYRSLRSQAAPALQKMQQVAEFQASIPR IVADFQINRSSERSLGMVYADALILLRPLMGQRNPSVFELLVHFSGLRKPIPGIIGTYPQ ISVVLDNCQLPLSTFQTVWNDNGGIQGRPPGLVLRRTLTLRELSGGTNTIYTAAAAPYLG KVEAATQFRIQTNPPLTK >gi|333604439|gb|AFDH01000111.1| GENE 4 5864 - 7348 1315 494 aa, chain - ## HITS:1 COG:mlr3684 KEGG:ns NR:ns ## COG: mlr3684 COG3119 # Protein_GI_number: 13473175 # Func_class: P Inorganic ion transport and metabolism # Function: Arylsulfatase A and related enzymes # Organism: Mesorhizobium loti # 2 452 6 493 522 208 33.0 2e-53 MQQPNILFITVDQMRADCLSILGHPVIETPNLDQLARGGALFRNAYTATPSCVPARAAIM TGKSQASHGRVGYEDCVPWDYEHTAAGELAKAGYHTQCVGKMHVYPARNLCGFHNIVLHD GYLHHNRYKDRNLVTESFDHCDDYLPWLRRRAGADADLTDLGLDCNASTVARPWHLPEAL HPTNWVVTQSIDFLRRRDPRKPFFLWMSFVRPHPPFDPPQAYLDLYDGMDLPGPVVGEWA ERDDEDLSGLNPVTARGRVPANRLKKARAAYYALITHIDHQLGRFFGAMDEYGVLNNTLI VFTSDHGELLGDHHLFRKALPYEGSAKVPLIVSDPGGFTGIRRGSRVDEVVELRDLMPTL LHAAEAPIPPGVDGCSLLPLSRGLKVPWRDAIHGEHEYGALSTHYMTDGREKYIWFSQSG REQLFDLCADPGEITDLAGDAGYAGRLEHWRARLAAELEGREEGYSEGGRLIPGRTPKTV LDHLTGSGQIPAEG >gi|333604439|gb|AFDH01000111.1| GENE 5 7506 - 9311 1828 601 aa, chain - ## HITS:1 COG:SP0060 KEGG:ns NR:ns ## COG: SP0060 COG1874 # Protein_GI_number: 15900005 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase # Organism: Streptococcus pneumoniae TIGR4 # 1 585 1 587 595 487 47.0 1e-137 MTSFKVQGSQFLLNDKPLRIISGALHYFRVVPEYWRDRLLKMKACGCNTVETYVAWNVHE PEEGKFDFGGIADVIAFVELAGELGLHVIVRPSPYICAEWEFGGLPAWLLKDSEMQLRCS DPKFLAKVDAYYDVLLPKFVPLLCTNGGPIIAMQVENEYGSYGNDKAYLGYLRDGMIARG IDVLLFTSDGPTDEMLQGGTLPDVLATVNFGSRPEESFAKFREYRPDEPLMCMEFWNGWF DHWMEEHHTRDGEDAARVLDDMLGAGASVNFYMFHGGTNFGFYSGANHIKTYEPTVTSYD YDAPLTERGDLTAKYEAFREVISKHEGESGSALPEPLPVRSYGEVKMTESAELFAQLGKL SQPVRRVTPEPMEKLGQNYGFILYSTHVTGPRRGQELHIQDVRDRAQVFLDGSYIGAVER WDVRPLKLDVPAGGARLDILVENMGRVNYGPLLRDHKGITEGVRLDNQFQYGWDIYPLPL DSLEGLEFGTAAGPEDADVTGERPAFYRGFFEAEEAADTFLRLEGWTKGVAYVNGFNLGR YWERGPQKSLYVPGPLLRKGTNEIVLFELHGTKRLSVRLEDKPDLGTEAAVDQSILNFTG E >gi|333604439|gb|AFDH01000111.1| GENE 6 9361 - 9549 207 62 aa, chain - ## HITS:1 COG:no KEGG:CPE0578 NR:ns ## KEGG: CPE0578 # Name: not_defined # Def: ABC transporter # Organism: C.perfringens # Pathway: ABC transporters [PATH:cpe02010] # 1 49 173 221 247 75 69.0 6e-13 MSYWNEYIMALSFITTESKRTLTLGIAYLMEVQRYATDWGALFAGLVIVNDSDARAVRSS TG >gi|333604439|gb|AFDH01000111.1| GENE 7 9844 - 9930 126 28 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKLNTFLSNVPARVVLLIYSVIVLYLLV >gi|333604439|gb|AFDH01000111.1| GENE 8 10568 - 10873 264 101 aa, chain - ## HITS:1 COG:no KEGG:BBR47_15940 NR:ns ## KEGG: BBR47_15940 # Name: yneQ # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 1 101 1 101 105 160 67.0 2e-38 MAFGVKREELQRWKAAVSRGDIAYLTHYWLEPRFPGITTVTKVGCSDLDRLSDWCISHGL NPRYIHNRSPFPHFDLIGPKQKEILRKEGIHDQLERFRLLD >gi|333604439|gb|AFDH01000111.1| GENE 9 11021 - 11782 835 253 aa, chain - ## HITS:1 COG:CC0694 KEGG:ns NR:ns ## COG: CC0694 COG0789 # Protein_GI_number: 16124947 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Caulobacter vibrioides # 8 250 5 252 255 95 29.0 1e-19 MLSDKLLTVKETARVSGVTVKTLHHYHKIGLLPPREISEAGYRLYGMEELQRLQEILFYR ELDVPLEKIGRALEEKPQRTAILSEQEELLTARKVRLEQLLRTLRQSIRYASEGERMEMA DMFKGFGREEEWKEALTEQNEYLKETYGYDLLEKEKIDVEALNEQAAEAKRFTDGMAGAL KNGVKFDHEDVRTLLRDHLDFLNKAGHAFGPQDYVNQAKFFMEDDFHRQMLESQQTGLSY YLRAAAESWAAAQ >gi|333604439|gb|AFDH01000111.1| GENE 10 11903 - 12493 653 196 aa, chain - ## HITS:1 COG:BH2202 KEGG:ns NR:ns ## COG: BH2202 COG0586 # Protein_GI_number: 15614765 # Func_class: S Function unknown # Function: Uncharacterized membrane-associated protein # Organism: Bacillus halodurans # 8 162 9 163 210 72 25.0 6e-13 MGDLILELVDQYGYTFFYAALALGPFGIPVPNEVTVMTGGAIGAEGLLNPWLVYLCIFLG LITAVTIGFAIGRVFGKRLINRLRGKERFARYFASSEQLLDKYGTAALCISCFIPCVRYI VPIFMGAYGTRYAKFALYAYSGAWVWTLIFYGIGRQWGYNLSQLLIVPETKLVLVIGCTA AVLFLFWRNRAKKSQT >gi|333604439|gb|AFDH01000111.1| GENE 11 12873 - 13871 1101 332 aa, chain - ## HITS:1 COG:RSp1011_1 KEGG:ns NR:ns ## COG: RSp1011_1 COG1063 # Protein_GI_number: 17549232 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Threonine dehydrogenase and related Zn-dependent dehydrogenases # Organism: Ralstonia solanacearum # 39 331 78 369 397 174 36.0 3e-43 MKCVAAQHGKIVLRELEEPQLLPGHILIRTEYSAISPGTELSMLRRSGDTPVELGYSAVG IVAQTGEGVRGLEPGQRVACYGAPYVRHAETLAVPANLAAPVPDHVRPEEAAFAGLGAIA IHALRTADLRFGESVVVVGLGILGNLTAQIASAAAIRTAGLDLDAGRAERLRTGGVEAFA DADELEAQLARVTGGLGADSVLLCVGGDGEPLINRAFGWLRDRGSVVLVGDVSANFSRGQ MFGKEARVLISRAGGPGRYDPMYERDNRDYPVGYVRWTEGRNTAEYIRLLAEGRISAAPL LTSLPFGRAAEAYENFRGSEPALGMLLRYGAD >gi|333604439|gb|AFDH01000111.1| GENE 12 14377 - 16656 2346 759 aa, chain - ## HITS:1 COG:BH3842 KEGG:ns NR:ns ## COG: BH3842 COG4753 # Protein_GI_number: 15616404 # Func_class: T Signal transduction mechanisms # Function: Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain # Organism: Bacillus halodurans # 470 755 240 515 530 88 26.0 4e-17 MPRIRWKVNMGLLKIFFSLLLVAVVMFASNYLVFENSISGIYRQVSENNKLVVKHVIRSF DQAFKEMNDLIYSIHALPYKSWEVMEDDRINMNDVYLMQKNMTTLVSSMDYLEEVVLFEK GSAFAITSQGTTNLQALFNEQYRHDTYNAEYWKSFAETNRTQKVIPASVFKVKVADRLVQ NRNLIVLMGSNQISTYNIMLLIDVDKLLKHVNQTAMMQGTSLMVMDSERNRILSTDPEWD LVEMLNEVYFNPGQEATVKSRDYEYLFYKSDYNDFIYIDKMPVELAGTAPVVAWNRMIMI IAILAAVGLSILLSHYLYRPIRDLVRLLGGKNSGPQADYSRIRSGIEQIQLENASVKIQM ETVHSEIRRGVFLHALDEFSHSREFENRMQHIFADFFQTGQFMMAAIHLRPKESPEAGSE PPAPLRAASLEQALQAVLREAAGEAGGHCAVFHAGSLQFLALIGLDRPSDREPVIRRMGQ MLKQAGSGPLKDVAVMAAVSRLYASKIQYCQDAYREVKRGLMYRDLSEASPVTDTQAIRY TWKVYFPLHEIEKLSNHLAGGNVEACLAMIRDILVKNAERHVHHHQLVPVAECMYYHMQQ YVEPGKVDQQELIRMQDGFIRSVHHAVDYREIETALEYAARRFAEWRKPAGDTKLEAEFI AQYINMHYKENLHLDHMAELLGTTPKYFSNYFKKAFGINFVEYLNKVRMAHAKEWLKTTD WSVAEIGEKSGYLNSSTFTSTFKKYNGISPSEYRRKSIS >gi|333604439|gb|AFDH01000111.1| GENE 13 16734 - 17612 1163 292 aa, chain - ## HITS:1 COG:BS_lplC KEGG:ns NR:ns ## COG: BS_lplC COG0395 # Protein_GI_number: 16077779 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Bacillus subtilis # 14 292 15 295 295 222 44.0 8e-58 MVTAKGSKLRKFGLFDLMNVIILSLVAAATVYPVLYIIAISFSDSAYIVQNKVFLWPRGF NLDAYKEILQNPRIPRAYLNTILYTGVGTFINLLMTAVAAYPLSRKTFFGRKYFMIAIVI TMFLNGGIIPTYIVVQKLHLLDSIWALVLPNAIWTIELLILKSFYESMSSSLRESALIDG ASEYRILFSIIIPLSKPALASIGLFYFMGHWNSFFLPLIYLNDANLYPLQVVLRDMLIFD QAKESGLVDQAALTPEAMKNATIFISMIPVLLIYPFAQKYFAKGIMLGSEKG >gi|333604439|gb|AFDH01000111.1| GENE 14 17606 - 18571 1122 321 aa, chain - ## HITS:1 COG:AGl3564 KEGG:ns NR:ns ## COG: AGl3564 COG4209 # Protein_GI_number: 15891904 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type polysaccharide transport system, permease component # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 28 321 16 309 309 282 47.0 5e-76 MQPAQSELAPTAVSQSKRSKGAEILRHIKRDRQLLLLFIPCIVFFILFRYGPLYGLIIAF KNYNVYEGILGSEWVGLEHFKAFFSSQDFWMLFRNTILLGLFTLLWGFPFPILFALLLNE VRLQFFKKTVQTLSYLPAFLSVVIISSMIIDFLSPTRGLLNTIIEALGFTRTYFLIDPEW FRTIYVSSEIWATIGYDAIIYLAAIAGVSPTLYEAARVDGCKRFQMMRYITIPSILPTLT IMFILKTGAMFRIGYEKVLLLYNPMTYDVADVFSTYVYRKGLLETNYSYAAAVGLFEALV ALVMLLVSNMISRRAGGSSLW >gi|333604439|gb|AFDH01000111.1| GENE 15 18659 - 20251 1879 530 aa, chain - ## HITS:1 COG:BH1913 KEGG:ns NR:ns ## COG: BH1913 COG1653 # Protein_GI_number: 15614476 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Bacillus halodurans # 57 443 35 440 551 87 24.0 9e-17 MTRKLLSTFLSLTLFATIASACAGGKQEGASSASTKPSSAAAADYGDTGGLKLPLVDEPV TLNWMLVSDNPDLSNKLIVKEIEKRTGIKLNIQAYSTANYKDKLKVVMASGKLPDVFHGL TPAEANKLGSQGALTPINSHLDKLPNFKSLYVDNKDSSWVMKSWSDDKDNLYTWPIYNIN RDVNHGFLYRKDIFDKLGIPEWNTTEEFYQALKKLKEAYPTSYPYASKTKDYIFRDWAPG WGIGGASYPAAYDENAKTWKLAFIQPEYKQMLDFMKKLYNEGLLDPEFVTDTDASWTAKM TTNNKSFVTFDWIGRLDLFHNQVKSQNPDYNLRYGNPVGPTGKIKQLSKIDNYGIVVSNN KNKEVALKLLDYLSSPSGAALVTMGVEGETFKMEGGKAFYPELKDVPNVDIGVLKDRYGL WLEGMYVRADSRSVYYNFTEKEQEAQDKMVKNNKIDALDPVLKFTDPETKKIADVLTSLQ KSANEFSTKYILNKSYGDAQWNEWLQTAEKMGASAYIEAYNNAQKRFDSK >gi|333604439|gb|AFDH01000111.1| GENE 16 20617 - 21633 1214 338 aa, chain - ## HITS:1 COG:Cgl2398 KEGG:ns NR:ns ## COG: Cgl2398 COG1524 # Protein_GI_number: 19553648 # Func_class: R General function prediction only # Function: Uncharacterized proteins of the AP superfamily # Organism: Corynebacterium glutamicum # 192 291 25 123 155 63 35.0 5e-10 MFNVLNDWKKTAGSILLAGLLVPASLAGAAAPPETSVAPSIAGGTAGGSESSVVQHAGVK PEGGQAAPAAAKKKKVLVIGLDGTRPNALQAANAVNLDALAANGAYSWTTKANSNYTWSA TGWSTIHTGVWYQKHGVTNNNWTGSKFGPYPSLMKRAELYNPALSTASIVHWGPINDKLV EGIDLEKTVATDAEVASNTVDLLKTGNPDFIFLQFDDIDHAGHTYGFSPKVSQYTKAIEG VDAQIGTILDAIKARSTYAQEDWLILVSTDHGGKGTSHGGGSSEETTIFLIASGASTVKG QLTGATYQADVMVTALKHLGVPVSSSWNLDGRAVGLVQ >gi|333604439|gb|AFDH01000111.1| GENE 17 21915 - 23669 209 584 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 343 565 2 227 245 85 26 2e-15 MKETIQDKKKLGNWRLFLRMIQDTHPSKLLLIAALVMSVATTGVGFIVPLFTKKLVDGFS IQSLDPWQIGLLVLAFVLQAVASGLSIYLLNRVGHHVVANLRDRLWKKLLHLPISFYDTN ESGEMLSRVTNDTAVVKEVITEHLANCITGILSIIGSIIILLFLDWKMTLVMLLAVPLAM VVLMLLGKKMFTISRGMQEETAKFTAVLNQVLPETRLVKASNAEEIEYERGKTGITNLFQ FGLREAKIHALISPLISFVLMAVLVAIIGYGGVRVSSGALTAGDMVAFILYLIQIIIPVT QLTMFFTHLQKAMGATERMMSVLEQDEEKLYDGAVLKDVSRPIHVKDVDFAYGDERILTG LNFTIEPGKVTAIVGPSGGGKTTTFSLLERYYKPTGGAITLGDTPIEQFSLNSWRSHIGY VAQESALISGTIRDNICYGVEREVTDAELNKVVEMAYAGEFIAELPQKFDTEVGERGIKL SGGQRQRIAIARALLRDPQILMLDEATSSLDSQSEIYVQKALDNLMKGRTTLVIAHRLST VVDADNILFIEKGHITGSGTHEQLFQTHSMYKEFASQQLRLQEA >gi|333604439|gb|AFDH01000111.1| GENE 18 23720 - 24397 884 225 aa, chain + ## HITS:1 COG:lin2728 KEGG:ns NR:ns ## COG: lin2728 COG0745 # Protein_GI_number: 16801789 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Listeria innocua # 1 222 1 222 225 232 48.0 4e-61 MANILVVDDDAHIRELVLIFLQAEGLQVFEAVDGIDALSKLENHKIDMVILDIMMPKMDG WQLCREIRSHHGDLPLLMLTAKGETSQKVKGFNLGTDDYLVKPFEPAELVVRVKSLLKRY RISVSQAVEVGSVTMRRSTYELLWNNESLTLPLKEFELLFKLGSYPGKTFSRDQLIEEIW GYDYAGDERTVDVHIRRLRERFPEEDCGFRIRTIRGLGYRLETAE >gi|333604439|gb|AFDH01000111.1| GENE 19 24394 - 25467 926 357 aa, chain + ## HITS:1 COG:lin2727 KEGG:ns NR:ns ## COG: lin2727 COG0642 # Protein_GI_number: 16801788 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 53 349 170 457 459 216 39.0 4e-56 MRRSFAARVRGTVLVLLAAAAIMLLCTYVAYTGLPFLYSLLGAEPGPYWKQAVFTAVVFI LFIGCVGAISSLMSKRHMLVWDMIQDAMRRIAKGDFTVSIDLPMDEKDRLGTIVSNVNQM AVELGALEKMRQEFISNVSHEIQSPLTSIQGFAKAIKREDLSPEARLRYITIIEAESERL SKISDNLLKLTSLESKHHPFEQVTYRLDKQLRSVVLANEPKWLEKKLDMEVELEPVVCRA DRDLMSQVWINLLSNAIKFTPEGGTIRIGLSAREGRARVTVADTGIGLTEEDRQHVFERF YKADKSRTASGGGSGLGLSIVQKIIEMHGGEISVESRPGEGTVFLVELPLETQEPDA >gi|333604439|gb|AFDH01000111.1| GENE 20 25694 - 26653 555 319 aa, chain + ## HITS:1 COG:all2237 KEGG:ns NR:ns ## COG: all2237 COG2207 # Protein_GI_number: 17229729 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Nostoc sp. PCC 7120 # 130 314 146 330 336 147 41.0 2e-35 MNKVMRPESFSIFDTYFEAMIRHHGTNGTERTDGKSGHTLSRLEIVRTDWTIRREREIRC ASEAAMVELSFCFEGCGQVEVSGSAHDLQEGSCSLQLMRDFSASFRYEQGARVRTLAFGM PVWLFNAYHGPVAAASASAFDRLLGTDSFRQFRCPILPATRRLLQELEDCPYTGAMKDMY LEAKALELFAVYTNRFLYESDSQAPVSGTLSRTDRQKIREAREEIVKRMDAPPSLLELSR IVGINDYKLKLGFKELYGTSVFAYLREQRLHKAGELLRTGDMSVSEAAARVGYMNFSHFA EAFRRKFGVNPSVYRKEPR >gi|333604439|gb|AFDH01000111.1| GENE 21 26773 - 27759 865 328 aa, chain + ## HITS:1 COG:all2609 KEGG:ns NR:ns ## COG: all2609 COG0614 # Protein_GI_number: 17230101 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-hydroxamate transport system, periplasmic component # Organism: Nostoc sp. PCC 7120 # 50 296 44 293 319 93 29.0 7e-19 MRFTGKDFRLGGALLLLLFSAACGTAGQQSGSGQSAAEGADGASGQAAVRTVRDAGGEVA IPAKPLRIADVSGSTEELLVLGFTPVVTGNTEMSAPTQLTPILQKKLGDGIVKAGWFQSE VSLEAIAAANPDLILAGPAQSKIYDQLRTIAPTVRVPYGFNAFRERLSFLAETLDKNKEM EDWSSRYEAESRKIQERITKLTGRETFAVIEATQKEIRVYAETGIADMLYRDLGLPKPPG TPDPDPWGGKVLSLEALPAIDADHIVLLADNEQNALEQSRLWSGLRAVKAGHVYRVTSRQ SYNEAFFALGKENLIGQIAEDILEKNKR >gi|333604439|gb|AFDH01000111.1| GENE 22 28029 - 28940 732 303 aa, chain - ## HITS:1 COG:BH3212 KEGG:ns NR:ns ## COG: BH3212 COG0640 # Protein_GI_number: 15615774 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus halodurans # 3 302 2 296 298 190 35.0 3e-48 MAYEVEFSFQPANELIVSLHTYLCKIWYKRIDLGPDWAPEIRTGLTDDFRQELDSTDLSP EWRLIFLFAYLSPEKKSVPDFLRWLESLSLGDLYVLLSPYIQNFPADMQAVRDKFVHLLS EWNSQYFAKIEPGIVTALEEDAEKNRALIGRMPAVELAEQTTSGMYFEPGGSLEKVVLTP QFHFVPGNVFYSFGPVTLCQYPASLPGHDHEEGPSPKLYRMLRSLSEKSRLRILRFLRSE PHSFIEVVRYLGISKGITHEHLFSLRCAGLLKAHVTGETVTGYSLRTSAVGELQELLLEY LED >gi|333604439|gb|AFDH01000111.1| GENE 23 29107 - 30072 883 321 aa, chain - ## HITS:1 COG:CAC0180 KEGG:ns NR:ns ## COG: CAC0180 COG4608 # Protein_GI_number: 15893473 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, ATPase component # Organism: Clostridium acetobutylicum # 1 319 1 319 321 457 64.0 1e-129 MSTKLLEVKGLKKYFPVSGGFLNRTVNHVKAVDDISFTINKGDAFGLVGESGSGKSTTGR AILRLTDKTAGEVIYKDRDIFSLSKPELRTLRTDMQIIFQDPYSSLNPRIRVGDAIGEAV LDHGLASKAEIRERVLEIMSVCGLAPHHIDRFPHEFSGGQRQRIGIARALILNPDFIVAD EPVSALDVSIQAQIINLFSDLRDQKDLTYLFISHDLSVVEHLCNRIGVMYLGSLMELAPR DELFANPLHPYTRALLSAIPIPDPEIRRERIVLTGDIPSPVDPPSGCKFHTRCPFAKAVC KEAVPEYRNVGGEHYVACHLV >gi|333604439|gb|AFDH01000111.1| GENE 24 30069 - 31049 498 326 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 5 269 8 271 563 196 39 5e-49 MNKPLLEIKQMSTHFYTDEGTVKAVDNVSLSLKEGETLCIVGESGCGKSVTAMSLMRLVQ EPGGKTVAGEVWFDDKDLLKAGPKDIRHLRGNEIAMIFQEPMTSLNPVLTVGEQMIEPII EHQLVSRKQAKKQALELITMVGIARAESIYDSYPHELSGGMLQRIMIAIALSCNPRLLVA DEPTTALDVTIQAQILDLLRKIKEERRTSILLITHDLGVVAEMADHVVVMYAGQVIEESP VLDLFRNPKHPYTQGLLRAKPVVNQRKERLYTIPGQVPKLVDLQESCYFSDRCEHCMEIC RTKQPPMLETGTGHRTACWLYEEGVR >gi|333604439|gb|AFDH01000111.1| GENE 25 31055 - 31984 1031 309 aa, chain - ## HITS:1 COG:CAC3181 KEGG:ns NR:ns ## COG: CAC3181 COG1173 # Protein_GI_number: 15896429 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Clostridium acetobutylicum # 22 309 15 302 302 364 67.0 1e-100 MPVSAQHTINPAAGQPSAPKSSLWKQSFLRLRKNKMAMLGLGVLIFIFLLCFIGPFFSPY SSGKVDAALIKAPPSLKHWLGTDQLGRDILTRLMQAGRISLTVGLASMVLSVLIGSVLGI LAGFYRGVVDQVIMRVADVLMTIPELPMLFIMGAVLSEWKVPSDYRLYIVMIMLSLVGWP GLARMVRSQILGLREREFIQAADALGLRDRRKLFHHLLPNTVPLLIVVATLRVGGAIIGE STLSYFGLGVVPPTASWGNMIDAANSLIDFQKRPWLWAPPGFAIFITVIAVNLLGDGLRD AMDPKMKSR >gi|333604439|gb|AFDH01000111.1| GENE 26 31997 - 32953 1235 318 aa, chain - ## HITS:1 COG:CAC3180 KEGG:ns NR:ns ## COG: CAC3180 COG0601 # Protein_GI_number: 15896428 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Clostridium acetobutylicum # 1 318 1 318 318 372 59.0 1e-103 MKSYVIKRLIYMLITLIGASMLIFMLYALTPGDFVDSNPKLSMERKIELKELYGLDKPVV ERYFIWLGNLLKGDLGFSLQYQQSVTSLVVNFIGNSFLIAFTSMIFTWLIAIAIGVFSAT KQYSWFDALITFLVFAAMSLPAFFVGLLIIKLLAVDLGWFPPGGKTTTGSTSTGLAYAWE VVRHMALPVAVLTMLSVGSLTRYFRTNLLEVIKQDFIRTARAKGLKEKTVVYKHALRNAL LPAITLLGFEIPSLFGGAIITEKIFNWPGIGQVYMQAFSVRDYPVLMGFTIFIATLTVIS NLIADLLYRVADPRVRLK >gi|333604439|gb|AFDH01000111.1| GENE 27 33029 - 34753 1891 574 aa, chain - ## HITS:1 COG:CAC3179 KEGG:ns NR:ns ## COG: CAC3179 COG0747 # Protein_GI_number: 15896427 # Func_class: E Amino acid transport and metabolism # Function: ABC-type dipeptide transport system, periplasmic component # Organism: Clostridium acetobutylicum # 2 574 3 566 567 590 54.0 1e-168 MKKRASYAVSLILAASLALSACSSSGTPGASEAPKTDEQAKQQTGADQFIAATDKSKSPA AATARKDTVVVTLTEPGGVFNPYFYHNGYDGNVTSVMFSPLVDIDETGKPIPALAEKWDI SQDGLKYTFHLRKDLKFSDGSPLTADDVAFTLSVLYDKAYDGETDITETAVKGGQAYKEG KASTIEGIKVIDPQTIEITTEKANARALQLLGGQVLSKAYYGKNYTPGNLEYIKTLHTKP VGTGPYKLEKFIPGQEVRFIANENYFGGKPSVEHFIYKTTSGDATQFFQTGEVDYSAYPA NDDSLELLKGLGYANVNIYTSTAYSFIKFNHSKPIFKDKNVRQAFIYGLDREKIVAAAYQ GYGQVANVPISPASWAYTEEGVNTFKFNQEKAKKLLDDAGWKPGADGIREKDGAKLVVHY FTTKGPLSDVLVPIAKENYKDIGIQLETELMDYNALLARTSKGDHDLASFSTTLLPDPSD GVISFYSKNKSSFTDTNGYANPKVDELIEKGISSFDIEQRKATYKELYKELSDDPPYILL TYRKIISAHNARIEGFKPNGYTGISSSLPKLKIE >gi|333604439|gb|AFDH01000111.1| GENE 28 35777 - 36256 496 159 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_0257 NR:ns ## KEGG: Pjdr2_0257 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 1 151 1 152 152 119 45.0 4e-26 MNVKIIGVALYIMLIYGISKHYPAMHGLFFPALGAFSFLFISRPFTAKAMRSISAGAVLA SVVGTLIYHLIPGIFALFVNTLIIIWLNRAKWNAPPILAVSLIPFFTVTPRIWDIPLAVA VSLAGLTATLLAAEFVHMRLPAFFRGGSKLAPGSEEAAG >gi|333604439|gb|AFDH01000111.1| GENE 29 36356 - 36526 191 56 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTYAEMLGRRSEILKRTIGDMIAKDNTKGLGMQESSFLRNMIKELHQNEYELQRNS >gi|333604439|gb|AFDH01000111.1| GENE 30 36749 - 37675 172 308 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149913192|ref|ZP_01901726.1| 50S ribosomal protein L35 [Roseobacter sp. AzwK-3b] # 9 255 1 245 305 70 25 3e-11 MLKEGGGILHLEQLEYIVEVAKTGSITSAARNLHVSLSAVSQSIAHLEGELGVVLFVRSR MGAVPTAEGKVIIRKAFEVLGKLDELKEAARGWGETLSGELRIGTIPGPMSLLVDAVAGF KKDYPLVRMEIAEKGSQEILDDIRHNRLDIGFIILFESLLKKSEGLTFERLLEGKMVVGM SDKSPLAYRGAVTPEMLRTQPVVLYNDEYVRWFMNRFAAEHGEMDILFTTNNTDAIRKAV EEQNAVTVGMDYSFRREWASLSTEVNMMTAELEFKAGQPVYLGWVRSEGRHFPRVSKTFV ERLRSGLQ >gi|333604439|gb|AFDH01000111.1| GENE 31 37836 - 38579 275 247 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 6 242 4 238 242 110 31 4e-23 MRFTDKVAIVTGGASGIGEATVRLFAQEGAKVVIADFSDRGQTVADELKAEGREALFVKT DVTKEDDVKHMVAETVKQYGKLDILFANAGIAKDGPADKLSWEAWQKTIDINLSGVFLSD KYALEQMLAQGTGGAIVNCGSIHSHVGKAGVTAYASAKGGVKLLTQTLGIDYAQHGIRVN AVCPGYIDTPLIAGRTQAITDHLTALHPMGRLGKPEEVAKAVLFLASDDASFVTGTTLLV DGGYTAQ >gi|333604439|gb|AFDH01000111.1| GENE 32 38995 - 39786 880 263 aa, chain - ## HITS:1 COG:BS_ywcJ KEGG:ns NR:ns ## COG: BS_ywcJ COG2116 # Protein_GI_number: 16080857 # Func_class: P Inorganic ion transport and metabolism # Function: Formate/nitrite family of transporters # Organism: Bacillus subtilis # 1 253 1 253 256 324 63.0 9e-89 MEVQPLLQVEKLAMKKMKIYKQSKLRYLSRSALASMFIGFGVIVAFKTGSFFYLEHSPFT YPMAAITFGAAIILISYGGGDLFTGNTFYYTFAALRRKLRWPEVIRLWLTSYGGNILGAV AFALLILATGLFREHDVNGFLLSVAAKKMNAPSLELFFRAILCNWLVCLAFFIPMSLKGD GAKLFAMMLFVFCFFISGYEHSIANMCTFAIALVVEHPDTISWGGVLHNLIPVTFGNLIG GGVLMAVMYHYVNKPFMDEHEEA >gi|333604439|gb|AFDH01000111.1| GENE 33 39905 - 40456 352 183 aa, chain - ## HITS:1 COG:BH2909 KEGG:ns NR:ns ## COG: BH2909 COG1396 # Protein_GI_number: 15615472 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus halodurans # 2 181 4 184 189 146 43.0 2e-35 MEFIQEVIAHNLAQLRKKRGLSLDNVAELTGVSKAMLAQIENGKSNPTVTTLWKIANGLH VSFSAFLKETDKPQIEKININQLNPLIDDDGNYLVYSMFPFNPEKKFEVFTVDLKPGFNH ISEKHLGEEYVLIQRGVLTLDVQGEKFELTPDETIKFNANTEHIYVNSTDELVRFYIIIS YPD >gi|333604439|gb|AFDH01000111.1| GENE 34 40536 - 41261 437 241 aa, chain + ## HITS:1 COG:SA0010 KEGG:ns NR:ns ## COG: SA0010 COG1296 # Protein_GI_number: 15925715 # Func_class: E Amino acid transport and metabolism # Function: Predicted branched-chain amino acid permease (azaleucine resistance) # Organism: Staphylococcus aureus N315 # 16 241 6 231 231 232 52.0 4e-61 MHELSHEMTDEENLSTFSQGVKDCIPTLFGYISVGIAMGIVGVSSNLSIIEVTLLSALVY AGASQFIICALFVSGSPVSVIIFTTFVVNLRNFLLSMTLAPRFAKYSLLKNIGVGAFVTD ESFGVAMNKIAKREPINVQWMNGLNVTAYIFWILSCMSGAFFGKWISNPEVFGLDFSLTA MFLALLVLQLQTINNGKLKFYLSLIVYVVILMLVLCMFVPSYVAIILSTIIAATIGVVKD K >gi|333604439|gb|AFDH01000111.1| GENE 35 41710 - 42768 1128 352 aa, chain - ## HITS:1 COG:TM0585 KEGG:ns NR:ns ## COG: TM0585 COG0673 # Protein_GI_number: 15643351 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Thermotoga maritima # 10 337 3 345 360 193 34.0 4e-49 MTTPVTAQPVRFGLIGCGIIADIHAKGIQETPEAELTAVYDFVPETAARFGQTYSAAVYE SLEEMLARDDLDVVCICTPSGLHAGQAVQAAKAGKHVFVEKPMAITMADLDDMIRVSREN GVLLSTVFPRRMSPAARYARELIREGRLGKLSLCSGYVNIYRSQDYYDSAGWRGTWAMDG GGAMMNQGIHTVDLLQWLAGPVASLYGKAKAVLRDIEVEDTAVSVLQFENGALGLLEITT TAHLGPVHRIEIHGERGSLVIEDDDIVALKIDGEPVELPEFEPFKVIPDGHRIQIRDMAL AVREGRESIVPGTEGRHSLEIILGTYESARTGKEIAFQSAPARYFAGSPIQP >gi|333604439|gb|AFDH01000111.1| GENE 36 42776 - 43783 799 335 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_1209 NR:ns ## KEGG: GYMC10_1209 # Name: not_defined # Def: xylose isomerase domain protein TIM barrel # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 281 1 281 288 407 69.0 1e-112 MKIAAFSGALMEYSIQEAMKITANLGFDGIEIACREPHLSPQTSLPRVKEIRRLADEHVL DIPVLGGYMGRFSESGDPECAAAYDEFLGLLERADYLETDMIRIFPGGPNAFLAADYHYE KAAHWLKKCAAEARKHEKKILLEIHNVSLIETVESSLRLLEMIGEDNVGLIHDAGNMYIS DTDFGRASVTGLGSRLLHVHVKDEKRIPEAGGPGTFRNITRHGEEHFLQCRLGEGEVDHR ELFEALAETGYGGWVTLECFAPYPPLEQLAHDRDAVRQLLRETASAAVPRTVPTTAPTTT APASPTASPTAPTPASPSSSSVSAPAEISLPSKGK >gi|333604439|gb|AFDH01000111.1| GENE 37 43801 - 44625 1023 274 aa, chain - ## HITS:1 COG:lin0219 KEGG:ns NR:ns ## COG: lin0219 COG0395 # Protein_GI_number: 16799296 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Listeria innocua # 2 274 10 281 282 193 40.0 2e-49 MKHKRLPTILRYTAIILSSLVMIVPFATALMNSLKTYKEYTTVPPKWIPEIFQWSNYAEV LKLGNIGGYTLNSFTVALLSVIGALLSCSMVGYAFARLRFPLKNALFVMVLGTMMIPPVV IIIPHFIIFNKLQLLDTLTPLWVIEWLAQPFGIFLMRQAFMNIPKEYEESAKLEGCNPIQ VYWRIFMPMARPTLATLAIFTFMGKWNEILTPVIYLTSNDKFTLPIGILSLGGQWFGNEQ LMVAAALLSLVPILIVFLFAEKYFVQNHSASGIK >gi|333604439|gb|AFDH01000111.1| GENE 38 44684 - 45637 1246 317 aa, chain - ## HITS:1 COG:BH1865 KEGG:ns NR:ns ## COG: BH1865 COG1175 # Protein_GI_number: 15614428 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Bacillus halodurans # 15 316 14 309 309 233 45.0 3e-61 MNDTVSGKAYAKAQTPARKLGKLDQEGKWGLLLVSPYLLHFIVFVAGPLIASLYFSFSQY DMMNPPKWTGLDNYGRLFGDALFWKSLWNTLYFAVLFVPAQTILALILAVVLNQKLKGLK LFRMAHFIPVISSWTVILYVSDAIFNPRFGFANSILASLGLDPQRWLQDGKLVIPLLVLI AVWKGIGYIMVIYLAGLQSVPQDLYEAAEIDGAGTLRKFLSITFPLISPTTFLVVILSTI STFQAFEQVYVLTGGGDISSAGGPNNSSLVLMLYLYREGFTFMRMGYASAIAWVLFMILF TLTLIQMKVQKKWVHYD >gi|333604439|gb|AFDH01000111.1| GENE 39 45671 - 47026 1775 451 aa, chain - ## HITS:1 COG:lin0220 KEGG:ns NR:ns ## COG: lin0220 COG1653 # Protein_GI_number: 16799297 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Listeria innocua # 53 445 42 415 418 128 29.0 2e-29 MRRKTWTTVLLSALTLAVVGAGCSKGTAETTGTGGESKDNGGKPVEILLGYYSDGKSDAK MKELIDKFMKKHPDIKVNTQSAPYGQFYQKLDTQIAAGQAPDVWLSDGVYVMKYAERGAV KDLTEWIGKDLKKDDYYGLDFNKDAKGKYWAVPQGIQVGALFYNKDLFDKAGVAYPNENW TWEDLKKNAALLTLDAKGKKADESGFDPKNVNQFGLTFFSITEGWFSVMKSYGGGVLDET AQKSIINTPQNKQAFEWMVDGMKKGIITDPVDLKSFQSSMAVFPSGSAAMRIGIYARVLA ANEAKLNYDVTLLPKGPDGKRVSPVIANSWVVNQKSADAKAQAAWEWIKYWATEDDVQKE WAALGEAIPVKKSVANSDVFLKAGEKPANRKAFLESLDFAKTLDNNAVWEEWVGKFNENA QRAFLGDAPIDAALADADKAVQKVLDDFYKK >gi|333604439|gb|AFDH01000111.1| GENE 40 47300 - 49573 2221 757 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_3763 NR:ns ## KEGG: GYMC10_3763 # Name: not_defined # Def: fibronectin type III domain protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 11 752 10 796 798 810 52.0 0 MTSVWNGWKKGSLIVLVLLLGLMTFPVSRGNAASLLTIDSHRDGGWLEVGTVRIGGSYAG AYEVELVINGQKVADAHMDDPDGDDAGTWYYDLDTTAYDGEVELIARAKDTATRYNAWSA FTRLTVHNPAAGVPQVTILSPADRDKVSGTADVAVNVYGASPVKSVEVRINGGNWKRAEK KGSGYIYKWDTKKTGSRTNSIEARATDVRGHTGRSLTTYVQTGGGERTKPVTVLPRQDRS MWIWENASYNLIRTPGSRQVLDAMAKDTKTFGQDPVTTLYLGVDKLGGTDMLEDERPKVR DFVRWAHAQGYRVQALIAGGTVPPYFGTYPRYREDALREFEKVLNYNLASESAEQFDGVN VDTEPYSLPDFKTGYPDVQIQYLDMLAALMERKEASGLSLPVGPAIPRWYDSSDTAKSIT WNGSTKWLSEHIQDTADYIAIMDYRDQAEGSVGIIQQAQGEIDYANKIGKPNSVILGVET KDIADGGDPETISFSEEGRSYMERELDKVYAAFEGNAAFGGIALHHYDTLRALPSAWGPG ARFWQPPADNRPPSGVKGKPQAAAFDYQRIDLAYGRASDNMEVEGYKIYRSTVRGFKPAE ELLAGTARGLTFKDDGLLPDTVYYYRVAAVDVSGNEGPASPEVSAKTGVTGLKPMIVDGM QVTYDGTKATVRLKTADMRTGEPVAAAVHGRFTRMGGKYVDGRSAGDGTFTAVSELVQAA SGEIGFAPRRVMAGGYYWAHAYDKPREASAVWGGAGE >gi|333604439|gb|AFDH01000111.1| GENE 41 49813 - 51930 1752 705 aa, chain + ## HITS:1 COG:BH3447 KEGG:ns NR:ns ## COG: BH3447 COG2972 # Protein_GI_number: 15616009 # Func_class: T Signal transduction mechanisms # Function: Predicted signal transduction protein with a C-terminal ATPase domain # Organism: Bacillus halodurans # 30 548 33 534 602 159 24.0 2e-38 MKTRNSQRKIISIHRRLFILIIFFIALPVLVMGWLWYESSTRTIEQSAIETNRRFIEQTG KNLDLYIKNLENSTYPIVTSPLTQQFLAPALPSAYPYYQLTEKVENDLFAQMIYGRSDIV GISLVGKNSLQINDFSEAKEILDMNTIRSRNADLLKRLDTLGNFEILGLNRVGSSPVLTV ARKLHSSSTYLYEGLLIVDLNLEQIENICKDESQGSFSAWVSSADGELVYHPDAWKIGTR ISGEQLLRFQGGEHASASFSFRTDTPQGEELVIYETSRVTDWIVGANIPMETIIGNLIRL RNISLAAALLLFMIALSIVGGYSLSITRSLTYLQRLMAKVENGDFNVRLTSTRERKDEIG LVFRSFSKMVSELNRLVREVHSSKLKEQELIIKQKESALQSMQAHINPHFLYNSLEIINS HAILENNRSISKMTAALAHIFRYNTGNAGPLVSLGEETAHIRSYLEIQTSRFRNLQVEID VEEPWVRTVPAVRLTLQPLVENAFIHGYRDKKPTYIGIVGKPRETYYAVEISDHGRGMSA EATGRLTSLLAGVTGEGPAYPEPGGAGPVGPREAPTAAPGHASEAAQEAAASSAGRDAGA AAGNGPGAAPVPVNDPDAPQRPVAGNDPASETLSGPGTPQKPATARSWPDAAGTQPDEGV RQGGIGLLNVHQRIRLTFGKEYGVFLLSSSPGAGTCFEIRLPYTN >gi|333604439|gb|AFDH01000111.1| GENE 42 51948 - 53006 1021 352 aa, chain + ## HITS:1 COG:BS_yesN KEGG:ns NR:ns ## COG: BS_yesN COG4753 # Protein_GI_number: 16077763 # Func_class: T Signal transduction mechanisms # Function: Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain # Organism: Bacillus subtilis # 1 345 1 361 368 133 28.0 5e-31 MYRMMIVDDEYMIHLSVRKMVETSGLDIIIAGEAEDGEEALRLLGSCSPDIVLTDIRMPE LDGLSFIEAAKKRNERTQFIILSGYSDFEYARKAIRFGVSDFLLKPVDPDQFREALGRVY DQLASSETKLSRQHEWLLTLQGLSEELLEQIWAACEDKAQLLAGEALRHYMSSGPAELSP PQFAHHFTGMLETELGKRDFRFARPYADREWPGRAADLGEALRDVLSAMIREIKGTRNLG SRQNIHRAMQYMQEHFAREDLSLSEVAEAIGMSDAYLSRTFKEETNVNFVKYLIRLRMEK ARDLLEHTDCPTTDAAYQVGFSDYSHFSKTFKKTYGLTPSELRKQSRQHPNG >gi|333604439|gb|AFDH01000111.1| GENE 43 53235 - 54272 955 345 aa, chain + ## HITS:1 COG:no KEGG:PPE_04696 NR:ns ## KEGG: PPE_04696 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 41 344 75 367 368 201 42.0 4e-50 MKKMKTALASSLTLLSLVVSLAPVSASSNNRDLEKEVAAGITGQERQIMIDVMKNLPKEE RENVIYIDDNGQIHANKTELKDVFGKVTVSEENTIAVSNNETFTLPTSTDSPTLNKSASV TPLAGYACGEAGGPYRRVFSNPGYSWWSGNVYLPSSANNEVYVNNASSNDTPYIYTGGHA SSGASEVDAGFQYSKTYNNWAHSIFTGGVYYHNNSFRFKAGQNLTFKFYVPADGQVALYA AGIRYDTNTADNYTVVTNVAGWKKSGAGNELKRITAIASNAPKPYNTGTYLKNVKWSNSM IGTSSTSNHQWLASDTGGYCTYPNSTQVSVNYVNAGEETVSINMN >gi|333604439|gb|AFDH01000111.1| GENE 44 54559 - 55020 512 153 aa, chain + ## HITS:1 COG:no KEGG:STAUR_1444 NR:ns ## KEGG: STAUR_1444 # Name: not_defined # Def: hypothetical protein # Organism: S.aurantiaca # Pathway: not_defined # 15 153 7 140 140 75 40.0 5e-13 MRVKKWVLGLMTAALLSLTLLISGAAAAPVTSVHSIWSTKPIQVIDNGTAYKAKAGNVII SWTNEPLSSGDSGFFNAIVQANGSQYEFRLVSFGSSTNDEIVGKFDIYKNSTLVASVAGT AYGLSQPVGNYFKFYDTTQQWHVSAYITSRFDY >gi|333604439|gb|AFDH01000111.1| GENE 45 55168 - 55353 86 61 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKLTSEGKLNIEYDYTKWGESDFGPSDRLEYWESKYLNTVPQDETDRIKMDKMREFEGSV Y >gi|333604439|gb|AFDH01000111.1| GENE 46 55701 - 56156 300 151 aa, chain - ## HITS:1 COG:no KEGG:BMB171_C2948 NR:ns ## KEGG: BMB171_C2948 # Name: not_defined # Def: hypothetical protein # Organism: B.thuringiensis_BMB171 # Pathway: not_defined # 1 150 1 150 151 172 62.0 6e-42 MSDKDIVRLIFDDRKDVEAILGDPEAFDVHECILNYGLSTKKFLYVDYKGEDDREIVNYI LDYEFARNIELALQEELEELGEFEYELLPDKIKEANKIISKRGYGLFSYPTSGDFYALFI AKLENKTKLLQVDLLHDERIPSKERYVQYYF >gi|333604439|gb|AFDH01000111.1| GENE 47 56457 - 56945 114 162 aa, chain - ## HITS:1 COG:BS_yeeF KEGG:ns NR:ns ## COG: BS_yeeF COG5444 # Protein_GI_number: 16077749 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 5 153 677 824 827 91 31.0 7e-19 MEKILNDLYRQIAETVNEMIPESWGKFYFYAQISDDGGGTYFFYQPETSPERYEYSLEIP FKYQVNEREFKLNKRKLLSLSEKVREIFKDEGQELWYSFTLSLERTGKFKVHFDYTKWFA TNYSFSDQLIIWQYKYLNEIPQDIALQNLITKYSEEFPDNPI >gi|333604439|gb|AFDH01000111.1| GENE 48 57328 - 57984 44 218 aa, chain - ## HITS:1 COG:no KEGG:BCB4264_A3279 NR:ns ## KEGG: BCB4264_A3279 # Name: not_defined # Def: hypothetical protein # Organism: B.cereus_B4264 # Pathway: not_defined # 1 218 1 218 218 344 79.0 1e-93 MKANEAFDNVCSLISEKYTASGWKYSKSGHWMTKKDKNFMHKLFFYTSWNNISDTNVAFY GECAIIPLKSKDKIFHINTRQCNVPSGQLYWNIANEENWERTVKEFTTWLDSVLIPIVEC CMNDLDNFVKQVAVRGFYPPNGYVVDISFILTYGSRKLAEEATKRYYASLDESIKKEFKE NYESMINGNKAVSAYGNNMMRNYSNFRTIVENKIIVII >gi|333604439|gb|AFDH01000111.1| GENE 49 58220 - 58714 -83 164 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MWASCLKPAKINRNGEMVISPHWFIKWGVFLFALVFVAVTVVLLFDPVIKEEAVAACGMI ALILGFCSIGAAISKMVINEEAIRTYKWYGKKTIRFADITRVESTTLYGGAIVIRSNKKS ITVTLENRGIHDFVKHLSRKLGSERVAHASAIISERIRVINSYQ >gi|333604439|gb|AFDH01000111.1| GENE 50 58849 - 58914 81 21 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MDKTKYCSPYVKRDASLEGEQ >gi|333604439|gb|AFDH01000111.1| GENE 51 58990 - 59718 -270 242 aa, chain - ## HITS:1 COG:MA3328 KEGG:ns NR:ns ## COG: MA3328 COG1357 # Protein_GI_number: 20092142 # Func_class: S Function unknown # Function: Uncharacterized low-complexity proteins # Organism: Methanosarcina acetivorans str.C2A # 37 228 51 252 299 81 30.0 2e-15 MVVWEMNNQNDERSKILGILNKSRYNNELIDGLEVSGMNLSFSDLTGVIANRIFANGANL RASSLIRTSFRDCEFLSANFDSCNFEGADIADCVLSEATLRNAQMKDAEIKISTCIETCF DEVELCNGNLSGSTLIKATFRQANLHGISASKAYFDESDLRGANLVNGDFEESDFISANL SEVDASYANFTGGNLTGAILCNGNFTGANCTNVKLNDVSWKGAIVEGAIFDDAVREEILK MV >gi|333604439|gb|AFDH01000111.1| GENE 52 59729 - 60211 -90 160 aa, chain - ## HITS:1 COG:no KEGG:BCB4264_A3290 NR:ns ## KEGG: BCB4264_A3290 # Name: not_defined # Def: hypothetical protein # Organism: B.cereus_B4264 # Pathway: not_defined # 1 159 100 258 259 219 60.0 4e-56 MPQKLWPVFFELSDQIAENVKPRWGVTHIFWPPTYPWNSERERQHMWMNLCSQPVPVKFL PNGPLGVGIRTYFGGHILDLFGRDFLKKSPGIVTELSWGGVRIDIMDKPWEAEKEVLLDK WLNVMNYLQSAHVLALPSFDEDHMGVSFSPSSAWKKYLEG >gi|333604439|gb|AFDH01000111.1| GENE 53 61589 - 62026 224 145 aa, chain - ## HITS:1 COG:no KEGG:YpsIP31758_0669 NR:ns ## KEGG: YpsIP31758_0669 # Name: not_defined # Def: hypothetical protein # Organism: Y.pseudotuberculosis_IP31758 # Pathway: not_defined # 16 143 16 147 150 77 36.0 2e-13 MAEIVKIHETVSLEQVENFEKTNEIELPKLYKDFLLEYNGGRVEPNVFKISSDEGESALN VFYGIGNMKNNLEKKIGFFEEILEIGFIPIARDSGGNQVCLGIREEFHDQIFFWIHDEEY DDAMDNMHFLAKNIQEFIDSLYDDE >gi|333604439|gb|AFDH01000111.1| GENE 54 62032 - 64893 1719 953 aa, chain - ## HITS:1 COG:no KEGG:PPE_03509 NR:ns ## KEGG: PPE_03509 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 1 942 1 913 937 645 43.0 0 MIGYDQIRVTSPYRMKRIDHVEITWKPGEHGRMKLRGIVDDADHVGAVLEASLKDEIQVV ENGEDGEEPIFKGLITDVQAVFTHGVYTLEIEAMAGSYLLDVRRKRRSFQQADMDYPALI AAILADYPGHDVICEAGAGVPIGAPVIQYDETDWELLKRLASRFHTVLISDIWSVQPKFS FGIPKLKSRTLPSDTSYKAFKDLLAYQKAGGSEAGLHDTDFFGYEFESGSRYAIGEELRF KDKPMRVSEASGRMEAGQLKYTYRLSRLEGMYQPSLHNDKLTGISLEGKVLDVKGELVKL HLTIDKEQPKASAHWFAFAPPTGNAMYCMPKAGTDASLYLPDDSCSNAKVLDCVRKNGDS CAKTGNPSNRYFGTEHGSEVELTPTAVNVAGGSKEPLKLSFDDASGVTITSHKKLTLNAG EDISLYTPKRIVIKATSQLMAKKLAAQSGFAIEGEYHFLSENVLAEGRDQTAYPPYNDEP QKGTPPPPPPPPPEKKFSWGKLLGNVVGALAIVAVVAVVAAVTVATLGAGTVVIAAVAAG AVAAGTAAVAAKAISDISRGEVSDFGDYAADAFRESVIGAVSGAVFGPLGAGAPILGKMV VGGVSGAAESIVSQLTDGDPGFSWGQVLFTAGVGFGTAGLLDAKIAQKTIGEYISQGATK IAPKWIADGFGKIGEGFGKFVGNLNDWGTSLGKGYMKETQQFAQSIAGSVTGALNKSVNR LTKDIADLGQMGKELGRKIQNSVQMPRFGYELAFDGPPLPANQIGNHFGKSVTNSANVLQ SSSKAVTRTVGGGGTGGAGNGKRLELSDFTKQVMETKPKNSPVPKKWYDKGGTISIDENG TWTYTNKEGISVSYPNGYPDFSPFYHPTIEPVKIKVASPKNNKKDFENANLEAGLTKDSD PPVPSKNEPPEGYTWHHHEDGETMVLVDSDIHDEFKHRGGQSNVNGKNKKSEE >gi|333604439|gb|AFDH01000111.1| GENE 55 64916 - 65305 320 129 aa, chain - ## HITS:1 COG:no KEGG:PPE_03510 NR:ns ## KEGG: PPE_03510 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 6 128 7 129 130 155 61.0 4e-37 MTGPRYVVRGAYIQCQCGSHKRHINLPNSHGSYVNEKPMMNEEDYKPDNISHFGICISPL NQSGETIYLISESGETISGKPCLPSILAKWTHSKETTKVAGKPALTTDSELHCELQGVIK FLNDGQHDN >gi|333604439|gb|AFDH01000111.1| GENE 56 65333 - 65821 330 162 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFGPAKRNSAGDLKLVGLGMFRWLVSLGFLCAVSALLLMPSMEMDAEESGQFIAIIGACA FILGFLAIFLLLSKTIVTDHEVRSHSWFASKTISFSDIEKVGYSRFFGGRFILQGTSQAV KVPLMSVGSAEFVDKLSEKLGRERAGAAVEALAKQKQQIERL >gi|333604439|gb|AFDH01000111.1| GENE 57 65908 - 66456 608 182 aa, chain - ## HITS:1 COG:no KEGG:Cbei_4392 NR:ns ## KEGG: Cbei_4392 # Name: not_defined # Def: hypothetical protein # Organism: C.beijerinckii # Pathway: not_defined # 2 175 1 174 175 150 53.0 2e-35 MMDYFVLKQDERCTDAPVLLDVRSRIDLRDIRPDRAHRIADTVVMQVKSTLETEYPDVLD GQLYLISDRLKRIAAAYEPDLPVKLIPLMDRVQRKQSNYYLPLFEEAEVLSPSSELNRDG TVVKKLVLQRSKLAGRKIFKIKESAKPLIIVRLDVAESLLRRDFAGIRLERAAVEEDTGN LG >gi|333604439|gb|AFDH01000111.1| GENE 58 66453 - 67076 304 207 aa, chain - ## HITS:1 COG:no KEGG:PPE_03512 NR:ns ## KEGG: PPE_03512 # Name: not_defined # Def: pentapeptide repeat protein # Organism: P.polymyxa # Pathway: not_defined # 1 190 4 193 215 195 48.0 9e-49 MDKEAALGDFLEKHIFGKWQDDLMTVDAAYQEQRQRIEEEFLAAFEAVCGQAAALQAKGC KGTIRYIYFSLMRTSVMENNPCYRIEAYDENWLMDTADCRSEWRADFIFAPLFRRMEELE ETKKSYARRITSADLDRIMQIEAVKYHLLTVEFMRNMVPQLLACKSYQQMNKVPEIALLA GEYRDECQLLHGSLGPQNGASGEALSG >gi|333604439|gb|AFDH01000111.1| GENE 59 67085 - 68497 1270 470 aa, chain - ## HITS:1 COG:no KEGG:PPE_03513 NR:ns ## KEGG: PPE_03513 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 1 470 1 470 470 556 57.0 1e-156 MSQTVFSFADISVAPYKFEKIMDLHMDKAVNEHAKLTISGIVPEEMLDRYVEQADENEQI AVSVRDGERTTVIFQGIVTNMAVKAVHNVRTLTIEAQSSTLLMDIRKVTRSFQNKQLTYR GLLDRIAGSYPNSDVVVEAAGGTSIGGLVVQYKETDWEFARRLASRLHLPLIPLCSQKGM KCYVGVPDLGEPHKLDAYNYSIRKNLKDFKRKSENGVSGIDEQNSISYEVSSSMILELGS PVTFQRRKLYVYRAGTRMEGGTLTNRYELRDKQGFSCPTLYAYKLAGTSLFGSIKDVSKD KVKVKLHIDGKSSSDEALWFPYSTVYSSPDGSGWYCMPEVGDEVRLYFPDEQEKNAYAAS SVDTDSSDPQKRSDPSVKSISTKYGKQIVFKPGSVEIIGSGSLLMRLTDDGGIEINSHKK ISISAMEDIEITGGGKVLIQGEEGIDLKQADASLSIMDEVKISGAKVNIE >gi|333604439|gb|AFDH01000111.1| GENE 60 68494 - 69093 618 199 aa, chain - ## HITS:1 COG:no KEGG:PPE_03514 NR:ns ## KEGG: PPE_03514 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 1 194 1 194 199 216 51.0 6e-55 MAFSDEKIIAMLNKMEESQKANTIGEGPVRIGQRYYEFEQQAFYDDKLLVFIPKDFTDMP EALSAIKYPHSQRPETIKTNEDGSINITLNRIDQDLEEGWVEELTQGMKTILKKVNPSNV FFTDGVEEIHGKQVGYFEFKSPALDAFLYNLMFFLELGGKTLMGTFSCKYDEYEAWRDVA FQIVRAVRVVQVEEGAEPA >gi|333604439|gb|AFDH01000111.1| GENE 61 69123 - 69899 532 258 aa, chain - ## HITS:1 COG:no KEGG:PPSC2_c4015 NR:ns ## KEGG: PPSC2_c4015 # Name: not_defined # Def: protein # Organism: P.polymyxa_SC2 # Pathway: not_defined # 1 258 1 258 258 254 50.0 3e-66 MFTRTYPNFAKGRILKTEMLENLRDFPHELTDLFLRDYSDGIVAGTEIRVGEDSLCIGPG IVKHGGLIYTLTREVELPYAATGRETVVKIRFYPAETEGDFTVCRAEPLLDEQVSVSPGE LELARFKLKEGARLRSDYRNFADLATEYNTLNRIRAQYAGFRQSTLHPEITRHFAAEMLK SRAAGTQDFAFAMQCLSMQSVDREAILHYLAVRLGREYKPYTNEQIHAHLSRILEEAGNG SRPVPGGRFGAPQRMIVD >gi|333604439|gb|AFDH01000111.1| GENE 62 69926 - 72577 2003 883 aa, chain - ## HITS:1 COG:no KEGG:BBR47_44730 NR:ns ## KEGG: BBR47_44730 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 1 883 1 891 891 1143 60.0 0 MKGYSYRLYQHPEDRMADPGAVRYSREELTEMTTYQLRTICSKEKLIEGFANTLDREGFI ATILKYRGTEECLLIGSPVPGGEERLQTAIRRYLRTPLGERGTKVPARITLYEGFRLDER DGCRLEGAAAFSGTNALLVNEQMELCGILNVVQSVSKPGTFCLTRNRDAYLKRSANRNYS LLFFSRHDSDYLYRIYHQNKPLPPVNLHYCRLPAADLEIREPELTEAVLAIDFGTSNTTA GAYLDGAYVRTPCSQDLLNGTVRLDAINYAAFPDPAAPDGQWIELLPTVVRVADCSDPLN PRYQFGHEALLYRKKLGSGTQATVFHGIKRWVNDYARSEEVSDASGNSTHVRRSDIIRAY LAYIIETAEHQFKCRFRNLHMSSPVKLKAQFLDMYTDILPEYRLETEDSLDEGMAVLYNT IADGFRQNRFEDGETYKALVIDCGGGTTDLSSCRFRIEDGHMSYRLDVQTTYENGDTNFG GNNLTYRIMQYMKIVFAEYYSCGETVTDIDSLIGIPSGDVFRHVDEVGVASVYERLEERY REAELLLPTRFREYGSHTREDYNRVRNNFHFLWEMAENMKTEFFRKTGILRNRFHSGSGD VREHDLKITGVDRWYLSVREQGRFKDRYEFPDVVFTIQEINHLIKADIYEIVRKFLEDFY QSGELQTYSIIKLTGQSCRIDVFREALKEFVPGRTIQFTQKAGETDRVPDLKLACLRGAI RYLGDKKAGIIQTHVTHQAAVIPYAVTAYTHSRSEKVLISTLDRVNTAQGSISRPWGAAE IEFCLKDMNGKLRQKYSYPSRPDSFQSVLYEDIAETYGRNIPQDETDSIVNEEVKFFVFG GGQNWGFHVVPVARRQEQLYVGTKRFFAFENDLSEIDFFDGLK >gi|333604439|gb|AFDH01000111.1| GENE 63 72600 - 73289 390 229 aa, chain - ## HITS:1 COG:no KEGG:BBR47_44740 NR:ns ## KEGG: BBR47_44740 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 1 229 3 231 231 289 59.0 7e-77 MNYIWDLLIRAEQCGLDKKDIQFSAASVYSPYMELSLEHMNASHVEKQVEINPFYRFDEM FRGMLDINYTEYPEFRRALFDILIHFLGEIDLLQGMNKREFYIRFVRRDIEAGIFGDKVR RNFQRCGKEEQDIVAASVLQTVQTGDALFTLKRTARLLFPGSTIYANCEEKNELLFYINQ EESESGRAKISLLLDLLLPVRFHTELYWNRHFGILGVEETMRLDRIAMY >gi|333604439|gb|AFDH01000111.1| GENE 64 73286 - 74572 936 428 aa, chain - ## HITS:1 COG:no KEGG:PPSC2_c4020 NR:ns ## KEGG: PPSC2_c4020 # Name: not_defined # Def: protein # Organism: P.polymyxa_SC2 # Pathway: not_defined # 1 428 1 439 439 472 52.0 1e-131 MKDIILDRLNKMEDLEQRRMLKQLMTGLFLNLVDYQEQMNRQLEKRVFDEIEDWEGRFDI YASLCSRDEWDPLHEFLYPMCPEDVENTLIDMLHVIEGLRDGREARLISLFLECDSVRIR DLTKSGRLFDGHLKTLSGTYPIKVALRPCEKYIKEIENLYQIFLKNGIPWRTINHPFAYK FIDVVLTECAAIPGEDETVTEISVNLEEFEAYKRTDRIPLWNMERLEIKNSGFPVPASDK VNFEHVLSLRKTGMEHGYLVDGHTDDIRYIKRSGEELTIVSPQEKAGVWNVLKVVQPVDI QIGRLQYALVSNRCASSFVGKYARKQATIVRSKGEVARIVHSLEASEYLTLEDIRIVDKA DSTAVTYEMNPFISDQVRASSGRAALCMSFRPGRSFGRDEFIRNDFMSFVVSEVQMYLPE YTCEGVWV >gi|333604439|gb|AFDH01000111.1| GENE 65 74569 - 76335 1460 588 aa, chain - ## HITS:1 COG:RSc2158 KEGG:ns NR:ns ## COG: RSc2158 COG0631 # Protein_GI_number: 17546877 # Func_class: T Signal transduction mechanisms # Function: Serine/threonine protein phosphatase # Organism: Ralstonia solanacearum # 14 203 9 207 304 74 27.0 6e-13 MRKENSDFKTGFVTEAGTFVQNRDYFAFVELEDMACWVLADGLDSDSEVNSAEMVVRSIL SRFLNKPALSATRLKRYMQEASEWLNEESRRVRLKASVLIVVTDYTRIVWAVAGNARLYV IRGGRLVERSRDQSLAQSWADEERIPLEAVDRHEERHNLLNYAGKPDVFEPYVSPKFMLE DGDVLLMSTPGMWENVASAEMVDAVEEAKGPAELTDLLEEVLLSRQKRMVPNYTAAAVYA NKVYKEVKGKKRKWAKRIALILIPLLLVGGGAYVYAAKEAARKAEAAQGMLEHGKSGDDY AAEGDYAKALKEYSEARSDSQKIKDKVHTVLFTKKQRAAQYIVDGDTFLKEGDYDKASAS FTKAQSEIKNQADFNPQHLEERIGRVQAYSAVMNTVKEGDQKFTALDYIGALEIYQKAKQ ASAEASFPDGDKLIKGKLDETQEKIAGLEKETKLLEADKLDKKGDRSMAAQDYAGAITAF ASAQEIYQEIKMLERVLGMERKITKAEEKQNPVPAAPPAAPAAQGGQAIPGQGSGDHPSG PNQPAQPQTPPSAGGGQSSPSSAGASGSPAGGEEQSRPAKGEGGNSPA >gi|333604439|gb|AFDH01000111.1| GENE 66 76386 - 77162 529 258 aa, chain - ## HITS:1 COG:BS_yloO KEGG:ns NR:ns ## COG: BS_yloO COG0631 # Protein_GI_number: 16078639 # Func_class: T Signal transduction mechanisms # Function: Serine/threonine protein phosphatase # Organism: Bacillus subtilis # 12 256 6 242 254 96 28.0 5e-20 MLYVRSRLYKRKPDVPAVRIGNGQTIGARNEQDDYFASTTTTIGTLAVLADGISGLANGR MCSTLAVSAFLKNFLNVEHVRHIPHFLSETARRVNAEIVEQLRGAQGGTTLVAGIINGDN LYWGAVGDSVILIYRQGEFLPVNPKHTYENVLEQKYLSGEITKDEMAANPKRRQLVNYLG YEQFQNMEISETPFRLKTGDKIIFCSDGVYNTLTEVEMEQILTGSSSPEESAQGMIDAIE AKGLHKQDNATVIILEKG >gi|333604439|gb|AFDH01000111.1| GENE 67 77228 - 77617 340 129 aa, chain - ## HITS:1 COG:no KEGG:BBR47_44780 NR:ns ## KEGG: BBR47_44780 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 1 123 49 171 176 250 88.0 1e-65 MPFLGETTGIEPVAGWLVCIEGPQMGQDYRIMAEKNFIGRSEEMHIRIIGDNAISRRNHA VIVYDPKKRNFYLLPGDASGLAYHNNEAVYTPVELTAYDLLQLGRSKFVFIPLCGAHFEW NNTAAAGIG >gi|333604439|gb|AFDH01000111.1| GENE 68 77825 - 78412 475 195 aa, chain - ## HITS:1 COG:no KEGG:BBR47_44790 NR:ns ## KEGG: BBR47_44790 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 21 195 8 184 184 178 54.0 1e-43 MARMLLRNKAKDMGETGVKGRKSGWITLLDVLIAGLAAAVLIYVYFINTDNTLKMFVSLL MAIGLSVLGFVYYRMPVERPEREAIAKLVLLNEDGESVKEWYIQGETSLLIGKSSGQNEV DIDLADAEYASLIHSEHAVLNRSGREWFIEDIDSESGVGIQKSGRGPRDKQEVEEPHKLD VGDIVYIANTRLLVK >gi|333604439|gb|AFDH01000111.1| GENE 69 78572 - 79003 263 143 aa, chain - ## HITS:1 COG:alr2991 KEGG:ns NR:ns ## COG: alr2991 COG2214 # Protein_GI_number: 17230483 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: DnaJ-class molecular chaperone # Organism: Nostoc sp. PCC 7120 # 2 134 11 145 333 78 40.0 5e-15 MDYYQVLGVARNAPQAEIKKAYRLLAKKHHPDLNPGNPDAERKFKQIYEAYQTLEAEASR NAYDHKLDGRDRRGSGGKGSQEKAAGSRAGAQQAEFDPSDVRKNFERFFGFAGKAGGGEA KPSQKNPMDTTDLFNRFFDAKKK >gi|333604439|gb|AFDH01000111.1| GENE 70 79199 - 79624 545 141 aa, chain - ## HITS:1 COG:no KEGG:BBR47_44810 NR:ns ## KEGG: BBR47_44810 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 1 141 1 141 141 240 88.0 1e-62 MGFRLKVEGAETFELGMDNIQTVTYDTDTPNDSNARSTDVGATLRISGKIITATDGDSAD DTLKLGLWSLVPAEKADCYRKVTLEVIAADQVVRKIYFPNAFVVDYTENFGDTEGVGSFS LFIKQKKDKTEFAKVEGGYSV >gi|333604439|gb|AFDH01000111.1| GENE 71 79744 - 81882 2036 712 aa, chain - ## HITS:1 COG:no KEGG:BBR47_44820 NR:ns ## KEGG: BBR47_44820 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 1 711 11 721 722 1237 87.0 0 MLFEEINPEKLDLVTIVGDVKAIDSLSDDKIKEINRHLLVRNFDEFLDKFSPTVYSFYNA ANQKVMYTLKKPEGLADDAISEIRIDQNNDFLKMLFTLIDTKRSQGIPNVDFKFENLLDM ISPKKVMDDIRQVRKEIHYLYGQYEKLDEGDPKKFDLGDKLNGMFEDASKNYNNVMAMLP LAIEDIKTRLLLGSAQEENKSEAFQIGMLTIGNNGELKIIEAPKSGSTELMLLDDNSSNE LVSVFEEDYESITETPSGYVKDLVVRTFCPLPAVQSTVDVETEVQNYNTYLEFYKNAKDD FVKTVKPLVEKILGVKMFFEQYATKNKGMQPTLLVTNSKLDMTVKSSNIPRLETYLNTVN SKNDFSDTIWFGIVPSVELETAGKVKVSRERFKGNEKVMKPDGNTMESLSMLLQVLKEYK VQLFFSFESGEDTTFNSMATAGIDKYIDKCGVLVRKEYSEFAVPCVPNFTIIPKDKSGVV IDSRMLHTEDGARLSQEKEDILRLWIEGVYIGASYVAAGLVSAYQCPEYLREQFKSVSRD YPGVRFDIEAGDHSLRAVSTMAKEISGFTNNIKDAINRKNFGFIFSSENAQLQDRDIKRI TVYKARSLAMAEDGFDSIYKTLVSTYIERILRFQTGDFKHENIVKFFSNNPSSQKSKWLG TRGFVNSIIQDGDDMSYIIDDKSNLCHIDLVFNGNVKNLEVTITKGTSPVKV >gi|333604439|gb|AFDH01000111.1| GENE 72 82341 - 84395 1404 684 aa, chain + ## HITS:1 COG:no KEGG:BBR47_44830 NR:ns ## KEGG: BBR47_44830 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 18 666 18 669 677 635 50.0 1e-180 MSLVRKLIHSKKWLQAALLVSLVAGLLIYPRPLSAAKVETPQGLDAMFVLDTSFSMNETD KDGIAAEVVKMFMDLEGTGHSRIGYVAYNDKIVSSLPLSDLGSSERSNAWKSTLDGIKRR WYSDMGLGLRKAAELMENGYDPARRPFLILLSDGGTDFGKHAGGRNADISGRDVEDSIGI ARKLGIPIYTVGLNRDGSARKSELENIAAETGGTSFMAGSADDLPEIFNLIFAKQLQASL ISVSAVSATGELQEVTVPVANSSISEANLILLSPNPLTEAQVYSTSKNVRLYKSDNYTLM KVIEPQKGSMRVIFRGKPGDLVKVNLLAGYKLQAGVELPEEAQKGVAFPFTARLYHSDGK PLGDSDLYGSMKAELVVTNPQKKTEERFPLKQEGNGFELAHIFPATDTYPWKIVMTAPDF YRETTTAELKVLNTPPEAKPGTIKISREDGEQKIDLGEYFHDANGDKLTYSVTADDGRNS VEAKFQDGFLLLNPLNTGNSELRVTATDEEGASATAILAVTVVSIWTLITKVLLGVAAAA ALGAVLYFTLRPKPKFTGRLEGYFLQTASGNDIPVKYWPLTSFDTRSISLQELFLSLNVN ESLPEADRIFFEARKDGSLLFRHSTRCAVQKGSSPLGKKQKDKLEYGDKLYITFEDGVTE IELRYKAVKASYRPQTQEAQTVRT >gi|333604439|gb|AFDH01000111.1| GENE 73 84488 - 85516 268 342 aa, chain - ## HITS:1 COG:DRA0332 KEGG:ns NR:ns ## COG: DRA0332 COG0515 # Protein_GI_number: 15807992 # Func_class: R General function prediction only; T Signal transduction mechanisms; K Transcription; L Replication, recombination and repair # Function: Serine/threonine protein kinase # Organism: Deinococcus radiodurans # 22 252 39 268 524 135 38.0 2e-31 MPPFWQGSEEAGSMSVRIDCGLASKTFLHDGAYRIGRVLACSELSIVYAARETGTGEACV VKEFFPKSLALRDVDGRSVLCRTPSLRSKYETLKSVFLNEAVILGHLRHPNVVRLTEHVE ENGTAYIILERCRGMSLERCIRKNRLRSKSRFYATTVPSLLDALEYIHEQGVLHRDIKPS NIIVGPDGQAKLLDFGSAVHSLSEDKPIFTSAGYSPLEFYSAASRQGPFSDLYSTGATLY YCLCGEAPVEASRRLFHDPVEQVLRKRGGRVTPLLSRRIMNCLSMDAGQRGSLQRLRTAL KAESLLWKAVEGLRANFRPGRKSPPGDAAASGKKKDLVKSEI >gi|333604439|gb|AFDH01000111.1| GENE 74 85691 - 86869 1442 392 aa, chain - ## HITS:1 COG:BH3679 KEGG:ns NR:ns ## COG: BH3679 COG4753 # Protein_GI_number: 15616241 # Func_class: T Signal transduction mechanisms # Function: Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain # Organism: Bacillus halodurans # 3 116 6 120 257 96 46.0 9e-20 MNILVADDESVIREGVKRTIEHAYPGYGVFLAASTEEAVKILSGQHVDIVLTDIIMPGMT GLEFMRISKRKHPAIKWVVISAHSEFAYAQEAVRLGARDYLLKPIGKPKLIELIESLTGE IRRENLQSKESVRLKSSLKYLREAVFLRLAAGLDTGNLDIQSFVEDFPDYYLVFVQMDAG SKSVHLEHFIVENVLSEMIETHGQGFVVSYDRQSLLGLVALNDGIRIDTLLDALKSHLKH YLKVPFQILNSGLLHDFKSVPQTVTRLRQASAAVEYDSIKVSGDKSIEVALQYIKAHYSE DLSLEKMASVVFLNPVYFSQLFKQKTGQGYKEYVTGLRLDQAKQLLCNPQLKLAEIAERV GYQDVRHFTQVFRKKFMQTPTEYRQEHHVTVV >gi|333604439|gb|AFDH01000111.1| GENE 75 86866 - 89115 1995 749 aa, chain - ## HITS:1 COG:BH2110 KEGG:ns NR:ns ## COG: BH2110 COG2972 # Protein_GI_number: 15614673 # Func_class: T Signal transduction mechanisms # Function: Predicted signal transduction protein with a C-terminal ATPase domain # Organism: Bacillus halodurans # 8 539 13 538 585 174 26.0 6e-43 MRRGFQSIHHRLFFLFLFCMSGILIIISLLFYSRTTEQFQTKISDLSRKNVSQTVDLFDL LLKGYDSLSKTIGNNFDLVRLLTESPQEPALDYINTRSVTNMIGAIFYSREDLIGIHVIM DKGKIYNYGNYMNVVDPEYRSSDWYRDVRQSSGKMVWLGVFPHSLIDQNEKRTVFAFGRQ IYDLNEHKPIGIVLYEANPQAILSALNNLKLSEHSEVYLVSDKGRFVSSTASAESLPSLQ DVPLPDDSQEMTVDQKNGRLAVASKLPFADWLVVSLTPYKDLNVELVQMQRYIILIGTIL VLVSAFIASIVSKRISMPLIRLIRQMKQVEQGNFKGIVNVTSYREINILVGSFNHMVNRI EELIERVKISSVSEKNAELHALQSQVNPHFLYNTLDMIYWMLDEKGNDKLGEVVLSLSHM FRYSSQWEEGAEVTLREEFRQIHHYLTIILIRLEGRLEVELKTDERYMDIRIPKMTLQPI IENAVKHGLEPLNRRGMLTISTFADGRELAIRIEDNGVGIEEEKLRGLRESLYGECTAGG RRSGGGAPGAAESADRPGAGGGAAQADAAAAAGEPGGREDAGTGDGAAFEASPVPGAGAA WGAGAADSGSGARAAFDASLARDTGANYGADTASSGTVDGVSFGASATSGAGASACGTVA AAGVSSGPAQAPAHAGPPVLAPGASFPPRPDISRSEEDASSQGGIGLQNLHRRVQHMYGE AYGVTVESSAGEGTTVIVRVPLPKEERNV >gi|333604439|gb|AFDH01000111.1| GENE 76 89170 - 89994 899 274 aa, chain - ## HITS:1 COG:BH3682 KEGG:ns NR:ns ## COG: BH3682 COG0395 # Protein_GI_number: 15616244 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Bacillus halodurans # 3 274 22 293 293 201 41.0 2e-51 MKSVKKGIVYALFAILIVTQMYPLLWLLTYSLKTNEEILGSSFFSLPASPRWGNYKEAYE AGHYLQYLFNSVFVTVVTMVCVILLSSMAAYAISRFRWKLAPAVMLVFLIGLMIPLQATL LPLMIIFKNMSILNTHLSLILPYIAFQTPVAVFILSGFMRSVPHEIEESAYMDGASVYRI FRSIILPISVPPVMTVCILTFINIWNEYILAATFISSEKLKTLPFGVYTFVSQYSVNYGN IGAFLVMGAVPVILLYFILSEKITKGMVAGAVKG >gi|333604439|gb|AFDH01000111.1| GENE 77 90009 - 90899 1146 296 aa, chain - ## HITS:1 COG:BH3681 KEGG:ns NR:ns ## COG: BH3681 COG1175 # Protein_GI_number: 15616243 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Bacillus halodurans # 35 284 35 280 293 179 40.0 6e-45 MNVLKVPARTVAVFVLPSLLLYVCMVFVPILVSFYTGLLDWNGISGSKFVGLANFKTMFF DDPVFWPSVRRTLLYAVFSMIEIPICLMVAILLNRYVKKANSLVSIYFLPVILSVVIIGQ LWKTVYNPASMGGMINGMLTAFGLTEWTHSWLTEPNIAMFCLYIVSLWQYFGYHLLIQFT GVQNIPAEIYEAARIDGAEGFTADRYITFPMIVPILKISLVLAFIGSLQAFDLVMVMTGG GPAHSTDVISTHMYNMSFLSQKYGYGSAIATFLVILCLAFTVLINVVFKRLENKVS >gi|333604439|gb|AFDH01000111.1| GENE 78 91021 - 92361 1579 446 aa, chain - ## HITS:1 COG:BH3680 KEGG:ns NR:ns ## COG: BH3680 COG1653 # Protein_GI_number: 15616242 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Bacillus halodurans # 1 443 1 436 438 232 32.0 9e-61 MGRKTARISAAALAGVLAVGLAACGRADQSAGTNTQDTNTGSKGGDKKVTITFQNIYPDP TTPTYKMLHKIVEQYEKENPNIHIELDSMNTDQQKMKLKTQAASKEIPDITIVNPAAQMK PFVDAGLLAPLNDMLDKNGLKGTYQDGLLDYYSFNNNVYALPDGNNIQVVYYNKDLFAQA GIKDTPKTFEELLEDVKLLKSKGITPIAIGEKDSWTGSFLFMNMLLRTNGGPGFLQDVLD KKKTFNDPAFTEAVSKFQELVQAGAFNEGATSVDYNAGGNIFKTGKAAMHIIGTWETGAI DASSVGGKVGVFQFPTVGGKGDVNQYMIAPGSAFAISANSKHLQETKDFLNYFTLNLPKV QFELKNAVGIGQKVEGDFKAAGYSDLAISILDLFKNVKGGDLAFDNTMNPATAQVHLGSI QNLFIQKADPKQVAQEHQSAFEANIK >gi|333604439|gb|AFDH01000111.1| GENE 79 92602 - 93762 1317 386 aa, chain + ## HITS:1 COG:SSO3049 KEGG:ns NR:ns ## COG: SSO3049 COG0673 # Protein_GI_number: 15899754 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Sulfolobus solfataricus # 4 354 20 366 371 127 28.0 4e-29 MEVVRIGIIGLGNMGSAHAKYLIENKVKGGVLAAVCDPRTERLEWAAREFGNAVARFTGI EEMYASGTIDGVIVCTPHYGHPAEAVAAFRHGLHVLTEKPAGVYTKQVREMNEAAAASGK VFGIMYNQRTQPLYKKLRELIRQGELGEIRRINWIITLWYRSQSYYDSGGWRATWAGEGG GVLINQSPHQLDLWQWVTGMMPKRLRAFCAFGKHRDIEVENEVTAYAEYENGTTGVFITS ACETPGTNRLEVVGDLGRMVIENDKLTFYRLRQSETEFNRTYKGGFGEPEVWKIDIPVGG ERGQHHLITQDWVNGILHGTPLIAPGEEGLKGLTLSNAMLLSAWTDEWAELPLDEDRFYG LLQQKIQASGAVKNAEEKTLDTTGSY >gi|333604439|gb|AFDH01000111.1| GENE 80 94078 - 94935 693 285 aa, chain + ## HITS:1 COG:CAC2608 KEGG:ns NR:ns ## COG: CAC2608 COG2207 # Protein_GI_number: 15895866 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Clostridium acetobutylicum # 27 275 35 278 284 92 26.0 1e-18 MFMNLHDREDMLGLSYRNEGKVDSVFHSHAYYEIYYFHGGSCNYLIGGNIYMLQPGDLIL MNGMTLHCPKVDTAVPYIRTTVHFEPAGLKPYLELPHAVNVLQPFQELKNCRLTLRGPEK EEAERILHEMSVHCKKDGLTAYNRLHLSFLDLLYFIHEQCQRTLRAGREFSSEKEKHVQR IVSFLEEHFADDLHLEHLQEHLNFSKFYLSKIFKEITGLTIFQFVYRRRINEAKTLFLHN PGHSVTDVCLQVGFKHLAHFSRLFKQQVGLTPEKYKKTVREQLSS >gi|333604439|gb|AFDH01000111.1| GENE 81 95075 - 96175 1234 366 aa, chain + ## HITS:1 COG:AGl1780 KEGG:ns NR:ns ## COG: AGl1780 COG0673 # Protein_GI_number: 15891004 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 26 353 7 333 338 315 49.0 1e-85 MHKKDGMNYAPEGKPAPVVTRGDFIFAAAGLEHGHIYGMCNGLREAGGELKWVYDPDPVK VKAFLAAYPGVRPATSLEEILQDEEVKLVAAAAIPCDRGPLGEKVMRSGKDYFTDKTPFT ALDQLQSAKKTAAETGRKYAVYFSERLHVESAVFAGQLIRDGAIGRVVQVLGLGPHRLNA ASRPGWFFERAKYGGILCDIGSHQIEQFLFFAGCRDAQVLHSKVANYNNRQYPELEDFGD ATLLGDNGATQYFRVDWLTPDGLSTWGDGRTVLLGTDGYIELRKYVDIARSAQGDNLYLV NGEGERRLELSGKVGYPFFGELILDCLNRTEHAMTQEHIFKAAELCLFAQRDAVRAEFPT SNTWGP >gi|333604439|gb|AFDH01000111.1| GENE 82 96389 - 97249 951 286 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_4947 NR:ns ## KEGG: Pjdr2_4947 # Name: not_defined # Def: xylose isomerase domain protein TIM barrel # Organism: Paenibacillus # Pathway: not_defined # 1 282 1 284 287 368 65.0 1e-100 MKLSVFTVATPELSPEQLAAAAKEAGISGIEWRYKEIPPEMAGETPSFWRNNLCSIPPEW DDAELSRFRDAAARYGLRSLSVTPYLGAGDLEGTERVLDAARRLGASFIRLGVHRYDRTR NFRELFELQRAYLREAEALCRQYGVKGLVETHHVTIAPSASAAYRLVEGLQPEHIGVLYD PGNMVYEGFENYRMGMEILGPYLAHVHVKNGGWAPGADENGMTRWVSSARPMNRGMADWR QVVADLRAVGYTGWLGVEDFSGELPGPEMLKKFSAFMNGLMQPSEA >gi|333604439|gb|AFDH01000111.1| GENE 83 97515 - 97880 170 121 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_3072 NR:ns ## KEGG: GYMC10_3072 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 11 121 29 140 147 85 36.0 6e-16 MLILSAAGCESRPEAEPAPKPLADFYQTDWGKIDRIDIRNGATGELKTFKEKEILRKWIN EARIIEITPDPNQEARTGFRYSANLYEGDQLKFGFTDSHIGNVYILPSEQLHNLLKNLFE S >gi|333604439|gb|AFDH01000111.1| GENE 84 97979 - 99244 1006 421 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_4900 NR:ns ## KEGG: Pjdr2_4900 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 6 419 8 423 426 630 74.0 1e-179 MKAQTIQNAAELRRIVGRLAASTSVTDMHTHMYSADFEDSLLWGIDELLTYHYLISESFR WSEDSYEAFWTMSKREQADTIWKKLFVDHSPVSEAASGLITILNRLGLDVSSRNLEEYRR NLAGRDLRGQLDTVMKLAKVEHIVMTNDPFDAAERTVWLDRGGNTDPRFSAALRVDALLN NWPQAVGELKQLGYRVEEAWTEETRGEVRRFLSEWIRRMDALYLAVSMPGDFVYPSDDHR SRMIDEAMIPVCREYGIPFALMIGVRRSVNPGLRLAGDMSMHSDVTAVEALCRRYPDQKF LVTMLARENQHELAVLARKFRNLMIFGCWWFLHVESIVEEMTRFRVELLGTSVIPQHSDC RVLEQLIYKWEHSRSIIGRVLADKYEKLHGSGWYVTEEEIQRDFDDLYHRNFWRFLGREA R >gi|333604439|gb|AFDH01000111.1| GENE 85 99309 - 100076 796 255 aa, chain - ## HITS:1 COG:BH1067 KEGG:ns NR:ns ## COG: BH1067 COG1028 # Protein_GI_number: 15613630 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Bacillus halodurans # 5 254 7 279 281 174 37.0 2e-43 MNLFDLTGKTAVVIGGNSTLGGEMAAGLAGHGAQVAVVGRNPDTSAAVRDRIEQGGGEAR CFQADATSSADLRRVLDEVLDWTGRVDILLNCPGKNSATPFFQITEEEWDSIMNVNLKSV MLACQVFGKYMVESGRGGSIINISSVSADPPLSKVFTYSASKAGVNNVTQYLAREFAPAG VRVNAIVPGFFPAEQNRKILSEERISSIMNHTPMNRFGEARELQGAAVYLASSAASGFVT GSILRVDGGFGAMTI >gi|333604439|gb|AFDH01000111.1| GENE 86 100383 - 101237 728 284 aa, chain + ## HITS:1 COG:BH3842 KEGG:ns NR:ns ## COG: BH3842 COG4753 # Protein_GI_number: 15616404 # Func_class: T Signal transduction mechanisms # Function: Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain # Organism: Bacillus halodurans # 182 284 423 524 530 82 39.0 1e-15 MSLMETFTRPIEALYNTSRIPAGFHSHLYYELYYFHSGQCSYLVGDRIYNLSPGDLLLMN GMTLHYPKINPAFEYCRTIVHFDPAYAEGLFRAPFHTPVLNPFKRTDNRLISLEPGERAI LEPMLEELCSLSGESDSLCRDRFLASFMRILLQVYEIADKPRNRSHEPAGPRQQHVQQLI SFVEAHYTEDLCLDDIAAAVHLNKHYLVKIFKEKTGITLFHYLYRRRINQAKVLFTLEPE KSITETAYEVGFKHLSHFSQTFKKFTGLTADEYRKQVLNTYPKE >gi|333604439|gb|AFDH01000111.1| GENE 87 101464 - 102564 808 366 aa, chain - ## HITS:1 COG:CAC1325 KEGG:ns NR:ns ## COG: CAC1325 COG1284 # Protein_GI_number: 15894605 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Clostridium acetobutylicum # 27 246 14 233 285 183 38.0 4e-46 MKLLQNVRIGPAGETMGGWSLAQWCFKLLMVICGSVLAAVGLELFLIPNRMLVGGMTGLS ALAAHFTEMKLGLFLFVLNLPLILLSYRQVRRNFAVLTVLGLLVFSLSALILHPVPALIE NPMSAAFLGGVSLGLGIGLVIRYGGTLDTLETRDHTEKLVKFGFKDQDFMLLNCFILAGA GFIYGWEQAMYSILAYLLAYETVHFSLRGFSVHRRITIVSGHCAEIEKEMEARLGRKAFD CEAKGAEEHEAAAKRAIPEERQAYGLERAAERFFSRRSRRIMANFRPIEPREPTGGWANG SGPGPDEGAPNEAMSESFSRSRDRSLSYTIHFMEEARLKAIVKAIDPAAGIVTDSRGRRR DGSLAE >gi|333604439|gb|AFDH01000111.1| GENE 88 102647 - 103888 1567 413 aa, chain - ## HITS:1 COG:BS_yhaU KEGG:ns NR:ns ## COG: BS_yhaU COG0475 # Protein_GI_number: 16078049 # Func_class: P Inorganic ion transport and metabolism # Function: Kef-type K+ transport systems, membrane components # Organism: Bacillus subtilis # 1 395 4 398 408 435 69.0 1e-122 MNYMVFEVGLAIALIAAAGLLSAKLRFSVIPFYILIGMAVGPHALEFWHFDFRFIESAPL IEFMGRIGVLFLLFYLGLEFSVGRLIKSGRSIAVGGTIYILINFTLGVLFAWALGFPLAE ILVIAGITTISSSAIVAKVLVDLKRTANPETEMILGIIMFEDVFLAVYISILSGLVLSGS TTLGGVLLSALIALGFMLVLLVAGRKAVPLLNRLLNIRSNELFALVIFAALFLVAGFSET IHVAEAIGALLVGLVLAETEHAKRIEHLIMPFRDFFGAIFFFSFGLTIDPLALGGAVWMS LGAVAITLIGNLAAGMLAGRSAGLPSKASANIGLTIVSRGEFSIIMANLGKAGGLLAVLQ PFAALYVLIMAILGPLLTKESKTIYKWMNKVIPFKDASGKKEGKTVLQKEGSG >gi|333604439|gb|AFDH01000111.1| GENE 89 103893 - 104387 477 164 aa, chain - ## HITS:1 COG:BS_yhaT KEGG:ns NR:ns ## COG: BS_yhaT COG0490 # Protein_GI_number: 16078050 # Func_class: P Inorganic ion transport and metabolism # Function: Putative regulatory, ligand-binding protein related to C-terminal domains of K+ channels # Organism: Bacillus subtilis # 1 164 1 164 165 180 53.0 8e-46 MYVRESDLPGIGKKFLMNTRGGDKIVVILHDDGRREMYHFHYDDPDESLSMVTLDDDEAR QLAAIVGGLTYKPKALESIEVALDDLIIEWYKMDPEYACIGQSIGELDVRQNSGATIIAV VDKNHGKQINPGPDYVLSADSTLIVVGERQQQKLFRHILKNGSG >gi|333604439|gb|AFDH01000111.1| GENE 90 104716 - 105075 278 119 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKQRNAIIRWCLFLALSFLLSFSAPVPLTQEAAASQSSSTYESVPPLSEHKSKYVIRKAV THHFAKMMKAANTLVVLFVLCLFTLFKAPVPGLRYKPFFCLLRRKQLLLPIKFTSNYVA >gi|333604439|gb|AFDH01000111.1| GENE 91 105300 - 105992 808 230 aa, chain + ## HITS:1 COG:CT574 KEGG:ns NR:ns ## COG: CT574 COG0006 # Protein_GI_number: 15605303 # Func_class: E Amino acid transport and metabolism # Function: Xaa-Pro aminopeptidase # Organism: Chlamydia trachomatis # 32 175 154 296 356 61 31.0 1e-09 MAATRQERHTNLREAEKKALALFEMAEAKGILRSGVTEKELNREIYQFAFELYGIKKYWH KRIVRAGSNTLHPYRENPPDRMVEPGDILFIDFGPIFEDWEADFGRTYVFGDDPLKNKLR RDVELAWHDGKAFFESRPDITGSELYDFMTALARDYGWEYGGPHAGHLIGEFPHEIVQGE EVENYIHPDNHIKMRDNDKNGLPRDWILEIHFVDREREIGGFFEQLLTVD >gi|333604439|gb|AFDH01000111.1| GENE 92 106025 - 106786 666 253 aa, chain - ## HITS:1 COG:SA1209 KEGG:ns NR:ns ## COG: SA1209 COG0561 # Protein_GI_number: 15926957 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Staphylococcus aureus N315 # 1 246 1 252 255 166 38.0 5e-41 MNFIFDLDGTICFKGQPISKRILDVLLELEDAGHFVGFASARPCRDMLPVLDERFGGHLL IGANGAMTFYRKQPLAYQPIPGPLAGQIVNLLNDYEAEYLIDDTWNYAYRLSPEHPFLAN VDPHGLARRVELDDIQSFVKIVVLSCSRFEELSAKLRALDVTIHHHSSEGILDITSQGVN KMAALSGCGLPLEEFICFGNDNNDLPLFRKAKHSVLIGDHDALAELAKEKIAVDDRTEEN ILQKLKELGTVLV >gi|333604439|gb|AFDH01000111.1| GENE 93 107157 - 108536 1271 459 aa, chain - ## HITS:1 COG:BH0578 KEGG:ns NR:ns ## COG: BH0578 COG1167 # Protein_GI_number: 15613141 # Func_class: K Transcription; E Amino acid transport and metabolism # Function: Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs # Organism: Bacillus halodurans # 9 459 10 469 469 319 36.0 9e-87 MREFTLDFSTSKKPIFHQLYTYFKNGIREGRLRSGDYLPSLRSSARSFGVSKNSVENAYQ LLISEGYLRNIPKKGYCVTYEPDASPREVIGAEAANISERTVTTDFRYGNIELGTFPFRH WNKVRNLLVAQYQSRYAVEGTNQGEYLLRKELSRLLYESRGVLSTPDQIVVGAAPQQLVM LLSQLLDVKKHRIGVENPGYDGARNTFLNLGFRVRPIPLTGSGVSLRELTGSGANVMYVS PSQQFRNRMTMPADKRTELADWARSREYLIEDDYEWEFKYEEGILPAIQSMVPDKTVYIG RISKALLPVFNLSYMVLPSGLLSEFHSKVPEYDQPVSRLDQLTFARYLSDGYWYKHLQQM RRLYEEKQRYFAEALERYMPGKAQAEGKDTGLHAFLTVRTDRSEDELIEAALEKGVRVYG TARYWLRPGDEYPTVLLGYGALGREEIAAGVKALAEAWF >gi|333604439|gb|AFDH01000111.1| GENE 94 108802 - 109443 767 213 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTNVTTTKEEVIERISGIISSELARVKTENPFFLNFPAEKDPQYFVWCNNLYHLSKHFGE LLKLRWERFPDVNHDVFSTHYDEEKDHAEMLRKWMIGIGLDDPENHTANYETEHFISLQY RAVAAMDENMSLLIINSTSEGFAHAVYLHAYKILQETGFTDLEYWAIHCEADEEHSQVYH LIQNMTEKQLQEAEHLVKYTCNTLDVMLASWFK >gi|333604439|gb|AFDH01000111.1| GENE 95 109463 - 109912 534 149 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSVLLKDKFSSNMDKANLVFAWQVVDNLTVEEAREAARIITETVANSAKAGKVKLLVDNR FMERDGRPIVFTPEVNSIWEEAQRTVFPHVSHIAVLCSGSIMKMQMDRISRNSNISDIQK SFWNKEDQAMLKEAFDFLGISSNDLVKNK >gi|333604439|gb|AFDH01000111.1| GENE 96 110074 - 112038 2004 654 aa, chain - ## HITS:1 COG:BH3700 KEGG:ns NR:ns ## COG: BH3700 COG0584 # Protein_GI_number: 15616262 # Func_class: C Energy production and conversion # Function: Glycerophosphoryl diester phosphodiesterase # Organism: Bacillus halodurans # 320 550 42 272 284 112 29.0 3e-24 MGVTLALVGMAVPFRAGMPQAHMADAGSQALGSGTTIAGGTPDHPNILSDKTKQTGAATE AASTGRGGTPPPVGAGAGVAAQPVKPPPAPGSRLVQVTEPETGIAIAPTIVTELRSKEQL EELSGPAKPATVILHVSSGLRITDPSGKTELGTLEAVLDGLGRRMIPAFYVRDGETADRV AGLLKKSGIEDAFVVSDQGELVKRARTLYPAVRGIVDFSSAGNLSADDLLNIRRKTTASL AKIAILPGASASRSSVAYLQQRLIVVWTKEAGTKTSPELGLHTLITAGVNGIVTDSPKAA YKALKVYSHGNTLIRKPYIIGHRGMPSKAPENTIVSNRLGLEAGADFIENDMYLTKDGRL VIIHDPLLESTTNGKGKVEDFTLAQLKKLNANKPYPAGFPYVQIPTLEEQIDLARSQGKM IMAEMKSKNPAAMDAFVKVVKDKGAEDLINTMAFNPDQLKRLSELMPEMPMGLLTGETAN EANIDGSLTNTLRLMQLRNTTFNTTYKGLGPNFMEAAKHRGVLISPWTFNDKSNFAKFFC YGAFGLTTDYAFWASDWAAYVKPVQDHIVVGNYESKDLSVLVETFKGDRLEKAADVILLD GESSVEAYGSRITAKRPGKAHALLRYTAVIDGGSKYDLYTQPITLEVREIKEPS >gi|333604439|gb|AFDH01000111.1| GENE 97 112359 - 114119 1803 586 aa, chain - ## HITS:1 COG:VC1952_2 KEGG:ns NR:ns ## COG: VC1952_2 COG3469 # Protein_GI_number: 15641954 # Func_class: G Carbohydrate transport and metabolism # Function: Chitinase # Organism: Vibrio cholerae # 294 585 1 319 323 179 35.0 1e-44 MKKILTGPKSVVKKTAGFLLTATLFASLIPAMASAADRGAWAASISYAVGDTVTYSGKTY QVVQPHTSLNGWEPPNVPALWKEVQGGGTVDNQAPTAPTGLKVSGTTTSTSITLAWNPST DNVGVTGYDIYRDTTLVGSVSGSALTYTNTGLTPNTAYSYTVKAKDAAGNVSAASSALSV TTLPTSGGSDTQAPTAPGNLAATGSTTSSVSLSWSAATDNVGVTQYEVYNNGALAQTVTG LTATVTGLSADTSYTFTVKAKDAAGNVSPASAAVTAKTQPTGGGGGGQLPKHIVTGYWQN FVNGAKNLKLSEVPAEYDIIAVSFAEMDRTKPGGVTFGIDPDLSKALGGYSNADLINDIK AKKAQGKKVILSIGGEKGNIDLGSASPNVSNFVSTMSGLITEYGFDGLDVDLEHGFNVPN LTTAVRQIQGKVGSGFVLTMAPQTIDMQNNQTSYIQFYNNVKDITTVINTQFYNSGCMLG RDGKCYSQGTVDFLTALTDLAIQWVQPSQLGIGVPATSSAAGGGYVSASVVNNALNCLAT GNSCGTYKPVAKYPDIRGAMTWSINWDGMNSYNFAKTVKPFLNQLP >gi|333604439|gb|AFDH01000111.1| GENE 98 114475 - 114759 355 94 aa, chain - ## HITS:1 COG:lin0181 KEGG:ns NR:ns ## COG: lin0181 COG2388 # Protein_GI_number: 16799258 # Func_class: R General function prediction only # Function: Predicted acetyltransferase # Organism: Listeria innocua # 11 88 11 88 92 68 42.0 2e-12 MRETIKQGNGYAVMENGEAVAEITYQPLGEESLVIDHTFVSESLRGQKVGEELVRAVVDQ ARKENKTVVPACSYAHALFKRHKEYHDIWRREEE >gi|333604439|gb|AFDH01000111.1| GENE 99 114866 - 115096 66 76 aa, chain + ## HITS:1 COG:no KEGG:PPE_00870 NR:ns ## KEGG: PPE_00870 # Name: not_defined # Def: histone acetyltransferase HPA2-like protein # Organism: P.polymyxa # Pathway: not_defined # 1 53 1 54 148 64 62.0 2e-09 MKEKKVREIRLSDYPAIYVLNQDFNPTLHSFSEQKVKEKIEIITKKQTISFLFVNKTRKL SDISMEAPMNCFFPIH >gi|333604439|gb|AFDH01000111.1| GENE 100 115378 - 116340 1043 320 aa, chain - ## HITS:1 COG:BH1197 KEGG:ns NR:ns ## COG: BH1197 COG3595 # Protein_GI_number: 15613760 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus halodurans # 1 318 1 285 286 63 21.0 4e-10 MRRNMGFLLIGAGVLALLYYFNPVGVFSWNGLSFKTQDIHLEKTAEAASLQNITVETGSA DTRIVKGEGDQVNVRLDGSVSKNQAEKFQLKVDAKGDTLSVGIEEPNEIGVGVTIINVEL VVELPEKNWKSVRVQSGSGNIDLESLKGDSVETKAGSGDTSFREIKSTKLVANAGSGNIY VADVQGDAVTLKADSGDIRAEQYAANDLKFEGHSGNVELKQGKASLQGETHSGDIRVEAG ELLRDADLKSGSGSVKIELTEEPKSLAVDFEGGSGNGSVDWEAFSYEEKNDKKDRLKGKF GSGEVKLKVRTGSGDFQLVK >gi|333604439|gb|AFDH01000111.1| GENE 101 116552 - 116950 330 132 aa, chain + ## HITS:1 COG:no KEGG:GYMC61_3016 NR:ns ## KEGG: GYMC61_3016 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC61 # Pathway: not_defined # 26 130 4 108 116 72 37.0 7e-12 MYSPPYPYFPHAFVPTVHGLPAGPGPFPRLPENPGYPPVEPKQLISSAASLRKLLADGNV VLARLSDEPFARRLMTAAQAGRKQEVDRLMKSIAISSVLAARYTPSGLVMTVTPGDQDLA CCVLTMSLKWGQ >gi|333604439|gb|AFDH01000111.1| GENE 102 117367 - 118218 795 283 aa, chain - ## HITS:1 COG:SA2231 KEGG:ns NR:ns ## COG: SA2231 COG0451 # Protein_GI_number: 15928021 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Staphylococcus aureus N315 # 1 274 6 278 283 203 38.0 4e-52 MAGATGVIGRPLLPLLVKEGHTVYAMVRSEAGKDAVLAQGAVPMEADAFDREGLIAQLRR IQPEVVIHQLTALSDYNLEENARIRKQGTRNLVDAAREAGARKMIAQSISWMYEPGEGPA GEDVPLDLEAPEPRKTTVDGVAALERAAAEMPESVILRYGLLYGPGTWYDRDGAVAGKVR SGEVKATEGVSSLLHVEDAARAALAALGWPSGAVNIVDDEPAPSTLWLPAYASALGAPEP EFQPGQGRGERGASNAKARREYGWEPVYPSWREGFKASLAQGN >gi|333604439|gb|AFDH01000111.1| GENE 103 118389 - 120008 1529 539 aa, chain - ## HITS:1 COG:BH2903 KEGG:ns NR:ns ## COG: BH2903 COG0366 # Protein_GI_number: 15615466 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Bacillus halodurans # 1 539 1 560 561 603 53.0 1e-172 MQKTWWKEAVVYQVYWRSFYDTDGDGYGDLEGVIRKLDYIKELGADVIWLNPIYGSPDVD NGYDISDYRTVMAKAGTMETFERLLREVHARGMKLIMDLVVNHTSDQHPWFTEARSSTDN PKRDYYIWRREGNNWRSYFTPSAWEYDERTGEYYFHSFATEQPDLNWENPQVREEIYEMM RFWLDKGIDGFRMDVINLLAKQAGFPDAEHPENISYLGNNSGIHEYLQEMHERVLKHYDV FTVGEIPFVTPEDGLLYVGEDRGELNTLFHFEVCDYMAHWEMDKFKAIQKRWYDGMWGRG WNSQFLNNHDHTRLVTRFGNDKEYRVQSAKCFAVLLHTLPGMPYVYQGEEIGMTGVRFDS IEDYNDIALKNKYKEEVEKGREPQEVFRSLLHLARDNSRTPVQWDGSANGGFTEGTPWIK VNPNFREINVEQALADPDSVFYTYQKLIRLRKENPVMIYGTYEPLLEEDDRIYAFLRELD GEKWLVLLNISDQSTVCTLPGFIASAEKELILANYEGSGPDCSSCEMKPYEARIYRVKN >gi|333604439|gb|AFDH01000111.1| GENE 104 120573 - 122150 1896 525 aa, chain + ## HITS:1 COG:BS_nprB KEGG:ns NR:ns ## COG: BS_nprB COG3227 # Protein_GI_number: 16078174 # Func_class: E Amino acid transport and metabolism # Function: Zinc metalloprotease (elastase) # Organism: Bacillus subtilis # 6 524 7 537 538 395 42.0 1e-109 MKKKLTSLVLGGTLLIASALPASAATAEVATPKSVTPKFIGETWKAPAGLSNDEKVWGFL DHKKEALSLSGSLKDNLKIVSKQTDAASGTNHYRLKQYVKGIPVYGAEQTVHLDKSGNVT SYLGSLLADSEQEVANGVKAKISASDAIKTAIADTEKAVGKLGQQQKPAQAELTIYPLEG KNVLTYATEVNVLEPSPIRTRYFIDAVDGSIVKKYDLLDHAVGTGTGVLGDTKQFITTQS GSTFQLKDTTRGNGIETYSANNGSSLPGVLKTNTNNTNWTDRAAVDAHAYAEKVYDFYKT KFGRNSLDGNGKLIKSTVHYGQNYNNAFWNGVQIVYGDGDGVNFLPFSGDPDIIGHELTH AVTEYTAGLEYYGESGALNESISDIFGNTIQGTNWLLGDDIYTPGKPGDAIRSLSNPEQF NQPNHYSKRYTGTSDNGGVHTNSGINNKAFYLIAQGGTHYNVSVTGIGRDKAINIYYHAL TYYLSPYSNFSNIRAAAVQSAVDLYGAGSAEAVSVGKAYDAVGVN >gi|333604439|gb|AFDH01000111.1| GENE 105 122328 - 122699 453 123 aa, chain - ## HITS:1 COG:no KEGG:Clos_1646 NR:ns ## KEGG: Clos_1646 # Name: not_defined # Def: hypothetical protein # Organism: A.oremlandii # Pathway: not_defined # 19 122 6 109 111 130 63.0 1e-29 MANTTINVTLPKDFDFESNRKPQGGESYFDGGLLELIGLYLLGAIITGLTAGICYPWSLV IIYRWKIEHTVIEGRRLRFEGTAVGLFGSWIKWFLLGLVTLGIYFFWAGIKLEQWKTRHT YFR >gi|333604439|gb|AFDH01000111.1| GENE 106 122743 - 123489 686 248 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLKKTSFLAALLLAIVVASFSGAVMARDYLLPHSTYIEICEEDPGDQLCQNFCEDFPDTP VCSGQGSGGQETEDNAVEARLDVQFNRMNIKVNGKEFVAPNILYEGTTYLPIRDLANLLG LSVNYYGAAQTAYIGQLPAGEVPDEVIDEWEKQGSDESTDTDAAAGTLVRGGGTIDVYLD RVQVKVHGERIAASTFLYDGTTYVPMRAACDILELPVNYYGPSSTAYIGKVPAGEVPKAE VDKWMSGK >gi|333604439|gb|AFDH01000111.1| GENE 107 123656 - 124201 -30 181 aa, chain - ## HITS:1 COG:no KEGG:Micau_5230 NR:ns ## KEGG: Micau_5230 # Name: not_defined # Def: hypothetical protein # Organism: M.aurantiaca # Pathway: not_defined # 13 169 49 211 218 79 32.0 6e-14 MSQKVTNDQTLSQLIVLGEIKAIFYSIGEDFWLRGGWAIDFLLGKITRPHEDLDLVTWVQ YRESLERALIESGFERMPVSDRQTDFRKSNVDIQFLYVTRSSEGNIILNGLPEWVWRADS LPLKQFNLNGISASVISPNQLLEEKVVYEQIGRTLRPKDIESKKYLPASLQKVNYYVLNQ E >gi|333604439|gb|AFDH01000111.1| GENE 108 124870 - 130353 5290 1827 aa, chain - ## HITS:1 COG:BS_yhdW KEGG:ns NR:ns ## COG: BS_yhdW COG0584 # Protein_GI_number: 16078027 # Func_class: C Energy production and conversion # Function: Glycerophosphoryl diester phosphodiesterase # Organism: Bacillus subtilis # 1056 1288 2 230 243 117 32.0 2e-25 MRRFSRFLSLFLTAALLCGTAPLGLFDAAAYAADPGRKALDVRKTLTPPVIDGRLDESLW NLSETMNVRTGEGTFKNARFGLLWDNKYLYIGVKAEDDTLVPSGTGYWFEQDNINFFFDP TLHQSAPFAADDMQVGFVYKPGSTPEFHFGAALGNHSGKDEKKILRAVGTEQGGWTLETA IPWDMLRFDPGLQKQLGFEIGVTDRYEADTSKQRTSYWSAFNSKSFWNDTAGYGILNLKD ENPVSAQIDPVLLQDHFDGYAPGQIPAGWISDVNAGSSPFTVVQDTYGNGRMAFDGKTSG QQARISAPVQWDDYIVEADMRFEEVLNDARWAALMFRGAADGKNPYNQMAVRRNGTFELA YRMPNNNWASPTPVSGMWKPLEFNKDYTLKVRAVGNNVKEYIKAKDEADFTLLMDQNFSS NLLEKGKVGFQADQSKVSFDNLKVTRVTADRLDVTLPGTLEALTGPATVTGSVYYSDGVT EVPAQDAIRLYSSDETIVKIVNNQLYPVKAGKASVKAVYANAETAREITVTPSATGAQAV KLQHAEGYVLTDTGMKLDLNTLSFQAEFSDFSKGTLKGGDLLWKPAGQEVSTGNGTLQVN KKGAYPVTVQKDNASLTVMVIAKNPGEKEYTLYEENFDQTAEGTLPKDWTRKEGTTASAA AVKSGAFELNASAAPDNPSRVLLPEYLGLFGNYKIEADITHLSANDAARWHSIMFRIQND NVPYYQMAVRQNAAAVNGVEFAERTPANEWNVMDRGSYTEAIDPAKMYRYTVKAYGDRVQ EWIGDKLLVDTDNAGAYKKGRIGLQANGSRMKVDNIRVTLQQDALPPLPSERFVQVVEPE TKISLAPTVVTELKSSADLVKLQGTSLPATAMLYVNGNLKITAPGGAEIGSLDDILGALN NKVIPAFYVRDEPSTDKLVEALKARGIEDAFIVSDKGELVKKARQAYPIIRGILDFRQAK ADTNEDLMEIRRKTTVNLAKIALLSQKAATRESMAYLQQRTLVVWAQDQSAQADKTVSLH NLITGGANGIVTDAPEAAIGALKLYSNGTTLIRKPYIIGHRGIPSEAPENTIESNALSLE YGADFIENDMYLTKDGHLVIVHDSVLENTTNGKGKVEDFTLAELKKLNANKPFPTGYPDV KIPTLDEQIDLARSKGRMVMAEIKTSTPAAVDAFVRIIKEKKAEDLVDAMSFDTNQLKRL AELMPEMPSGLLTSGYANEANVNKSLRETLKVLQPLNATFNTSYSGLGKNFMEAAKHRGV IISPWTFNNKNDFIKFFGLGAFGITTDYASWSADWAASVKPGKNSYSLSPGEKATLSLEV ESYRGTKTNTAPDIVLLDGQDVVDVSGSQITGKKAGKAHALLRYTASIDAANKYDLYTQP VTLEVKGGSSGNDGGSSGGDNGSEGNNGNNGNNGNNGNNGNNGNNGNNGNNGNNGNNGGS AGKVTATEGKVDASALREALKTHSTVEIAYTGDTVEIPASALMDVPQGSRTLVIAGPVGK YTVQLADLKLDEAARKLGGESRSMNVRYTLRYAADSDAAAIGAAVKAAGLQAAGTPVQLE IAAKAQSGGSAALETQGQLELTLDGTFDAKRATGVRAYPNEKTISFAPSLFAPAGTAKTT VTFKRSGSGFYAVVSGAPVFADMAGHWAQADVELLAAKLVVEGSGGGRFDAERSVTRAEF AALLVRALGLPEAAGPAAFGDVGSADWFAGDVAAAAAAGLIGGYEDGSFRPQRPITREEQ AAMLVRALPYAGAASAAAVTKPQQEEILARYTDSGKIGWAQAEVAAAVHAGLMNGMTDGT LAPEGEATRAQSAVMLRRFLVTAGFIN >gi|333604439|gb|AFDH01000111.1| GENE 109 130715 - 131125 565 136 aa, chain + ## HITS:1 COG:no KEGG:Sgly_0991 NR:ns ## KEGG: Sgly_0991 # Name: not_defined # Def: hypothetical protein # Organism: S.glycolicus # Pathway: not_defined # 1 136 1 139 142 116 47.0 3e-25 MKEIPMSYIKANQAGIVLFAVLTFATRQPWLLGLLLAIQLAGLLLRWNLFVQAAKPFLRT DGETQAAELQRFNNVLAVLFLLLSVLSFSVGWTAAGYIFAGMLLAAAGTALLGYCIGCTV YFQYKQLLARRRLNRS >gi|333604439|gb|AFDH01000111.1| GENE 110 131254 - 131742 543 162 aa, chain - ## HITS:1 COG:no KEGG:PPE_04905 NR:ns ## KEGG: PPE_04905 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 1 162 1 162 162 204 62.0 1e-51 MSGVMQIRDHLLDELELSVRTSEALIRRIRPEEWGFTPGENMRTLLQLVHHIAALPASDL AILQEKSQPEVELVENGAQDVTDPEQLAKRLRTHFDTLKAYMVSLSEDELLNKETKAFYL EHSMPQIKWLIEIVTHLFHHRSQLYNYLKQNGHELNFFMLYA >gi|333604439|gb|AFDH01000111.1| GENE 111 131805 - 132674 570 289 aa, chain - ## HITS:1 COG:CC2573 KEGG:ns NR:ns ## COG: CC2573 COG2207 # Protein_GI_number: 16126811 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Caulobacter vibrioides # 106 277 90 258 270 84 34.0 3e-16 MDARLHDLFRPVQANGRVSTYIYEEKGPSPVLKPYVCCYWQSEPRGVEGAPLLLRPDAVD RVLPDGCTDIIFTENLKTGEMDVRYCGTFQQAFTVSYEEGEPMRKFGIRFLPGGAYPFLR TALSEFHDQAVAAGQIGPVIGEETEERVREARSFRERIGAVEACLVRQLSDKGTDGDNRM KNVLYRVFISGGGETVSELARSETISTRQLHRSFNQWVGLSPKKFAEVVRFQTLLRDIQA GSVTDWAAAAAERGFFDQAHMIREFKRFYGASPIKAAAEYRGMSDLSYL >gi|333604439|gb|AFDH01000111.1| GENE 112 132953 - 136222 3568 1089 aa, chain + ## HITS:1 COG:BS_vpr KEGG:ns NR:ns ## COG: BS_vpr COG1404 # Protein_GI_number: 16080860 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Subtilisin-like serine proteases # Organism: Bacillus subtilis # 66 701 48 600 806 290 35.0 1e-77 MKNRHLIQKLSVMSLAFAFVAGTALPHASAAQSGKSIQPRTQLNGSLNPGTNSLPGQVKG YISPKLNTASTNSVRVIVQLQNQPVAVGKYAAKLGMSALAAESTESAITQEQTALVSAAK SSGINLQVNYQYNTVLNGLEVTVPANKIPALAKLAGVKSIHPSANYFPIPVDEPKGLDVS SPNFDITPLKQIGADVAWAKGLTGKGLKVGVIDTGVDYLHPDLKDAYKGGYDSFEKDNDP YEEPPLTPEEDPYGTGFEGTSHGTHVSGTIVGRASNPSSDIVQKGVAYEADLYVYKVLGR NPETGKSSGSSAQVIDGIEHAVKDGMNVINLSLGSDSEKDPNSPDVVAINNAVLGGVTAV IANGNAADKGPYYYSLGSPATSQLAISVGAVTSPKTQYTASVSEAVYTPPVSLGAAAVSP VTPAAGYNLNVMAWETGQENFASILGTNPRDVVYVNLGQPQDYEGKDVTGKVVLISRGNL AFVDKIANAKQRGAKAAIIFNGNTERGDATKADLSESVIGRDGFVGSAAFLGDGFEYIPT FDMKGTEGRALARKALAAQGQTLKLAFGANYPKSEIPGDTMATFSSRGPNVDGDLSIKPD ISAPGVSILSTWPAYGKQKPDANYNTAYSRISGTSMATPHVAGLALLLKQQHPDWSPLDI RAALANTSDKISDLDGKLYDVYSQGAGRANVGTAVKTQALLQSVEPITILDKYWQPQAVT NYNPSVSFGLLAPGTNAQKELQLKNVSKQSVTYSAKVVLHPNVTSDPNAPTKTPDVTNLT AQLLGLQNGKLTVAAGASKGFYLSVTPKNNAVKGVYEGEVLLERSGQPSLHLPFAVHVGQ DKPENGFGLQELEQTENAIYPDNRDGSPTTTDLSFRLTAKDVNAISLWAVGLDDKEIGIL DEITQTDANGRLKLIEPGVYSFEGIDGSYVDGELDANGNLKVKQLTEGTYKLSVIAQKID EFGNNVDGISYTAYSSLRIANLENDRVAKAKDDFKAKIVNTRKINQPVLQLPKTDGIVYK VTNSSNKAYVDNSGVLKFVPNSGVVNVELTVTISSAKNPAVKTTVKVPVVLSKSSIPQRQ TADESALAE Prediction of potential genes in microbial genomes Time: Sun Jul 17 10:18:47 2011 Seq name: gi|333604167|gb|AFDH01000112.1| Paenibacillus sp. HGF7 contig00161, whole genome shotgun sequence Length of sequence - 296252 bp Number of predicted genes - 258, with homology - 234 Number of transcription units - 166, operones - 56 average op.length - 2.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 9 - 57 13.2 1 1 Op 1 4/0.143 - CDS 67 - 1680 973 ## COG4468 Galactose-1-phosphate uridyltransferase 2 1 Op 2 2/0.171 - CDS 1727 - 2719 922 ## COG1087 UDP-glucose 4-epimerase 3 1 Op 3 . - CDS 2805 - 3980 1051 ## COG0153 Galactokinase - Prom 4048 - 4107 4.2 + Prom 4200 - 4259 2.8 4 2 Tu 1 . + CDS 4279 - 5139 699 ## COG2207 AraC-type DNA-binding domain-containing proteins + Prom 5184 - 5243 5.1 5 3 Op 1 . + CDS 5265 - 6041 684 ## Pjdr2_0601 prolipoprotein diacylglyceryl transferase 6 3 Op 2 . + CDS 6047 - 7459 1241 ## COG1964 Predicted Fe-S oxidoreductases 7 3 Op 3 . + CDS 7456 - 7890 142 ## Pjdr2_0599 hypothetical protein 8 3 Op 4 . + CDS 7957 - 8844 321 ## GYMC10_5599 hypothetical protein 9 3 Op 5 . + CDS 8845 - 9450 268 ## Amet_4221 hypothetical protein + Term 9536 - 9574 9.5 - Term 9517 - 9569 13.0 10 4 Op 1 26/0.000 - CDS 9589 - 10548 1360 ## COG1079 Uncharacterized ABC-type transport system, permease component 11 4 Op 2 24/0.000 - CDS 10549 - 11628 1270 ## COG4603 ABC-type uncharacterized transport system, permease component 12 4 Op 3 15/0.000 - CDS 11621 - 13159 1526 ## COG3845 ABC-type uncharacterized transport systems, ATPase components - Prom 13238 - 13297 2.9 - Term 13243 - 13280 -0.9 13 4 Op 4 . - CDS 13311 - 14351 1200 ## COG1744 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein - Prom 14459 - 14518 6.4 - Term 14554 - 14587 1.7 14 5 Tu 1 . - CDS 14601 - 15857 1251 ## COG1171 Threonine dehydratase - Prom 15891 - 15950 2.9 - Term 15939 - 15984 6.0 15 6 Tu 1 . - CDS 16040 - 19372 3317 ## COG0841 Cation/multidrug efflux pump - Prom 19523 - 19582 3.1 - Term 19517 - 19552 5.8 16 7 Tu 1 . - CDS 19588 - 21909 2414 ## Pjdr2_5849 S-layer domain protein - Prom 22007 - 22066 2.1 17 8 Tu 1 . - CDS 22074 - 23021 708 ## COG4294 UV damage repair endonuclease + Prom 23006 - 23065 4.3 18 9 Op 1 . + CDS 23113 - 23199 67 ## 19 9 Op 2 . + CDS 23239 - 23874 672 ## COG1182 Acyl carrier protein phosphodiesterase + Term 23938 - 23973 6.0 - Term 23922 - 23965 10.3 20 10 Tu 1 . - CDS 24009 - 24314 449 ## gi|167464323|ref|ZP_02329412.1| hypothetical protein Plarl_17489 - Prom 24529 - 24588 7.3 - Term 24586 - 24622 -0.9 21 11 Op 1 35/0.000 - CDS 24735 - 26822 233 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 22 11 Op 2 . - CDS 26829 - 28580 270 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P - Prom 28617 - 28676 2.3 23 12 Op 1 31/0.000 - CDS 29059 - 30084 1045 ## COG1294 Cytochrome bd-type quinol oxidase, subunit 2 24 12 Op 2 . - CDS 30081 - 31451 1523 ## COG1271 Cytochrome bd-type quinol oxidase, subunit 1 - Prom 31512 - 31571 1.9 - Term 31583 - 31635 2.2 25 13 Op 1 . - CDS 31650 - 32375 267 ## DSY2645 hypothetical protein 26 13 Op 2 . - CDS 32387 - 32890 28 ## DSY2646 hypothetical protein 27 13 Op 3 . - CDS 32915 - 33334 196 ## - Prom 33425 - 33484 2.4 - Term 34069 - 34129 19.3 28 14 Op 1 . - CDS 34154 - 34414 340 ## 29 14 Op 2 . - CDS 34505 - 35872 1334 ## COG0733 Na+-dependent transporters of the SNF family - Prom 35924 - 35983 5.5 - Term 36014 - 36049 2.5 30 15 Op 1 35/0.000 - CDS 36066 - 36947 1077 ## COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components - Term 37041 - 37078 -0.7 31 15 Op 2 20/0.000 - CDS 37129 - 38184 1121 ## COG0609 ABC-type Fe3+-siderophore transport system, permease component 32 15 Op 3 . - CDS 38181 - 39188 1209 ## COG0609 ABC-type Fe3+-siderophore transport system, permease component - Prom 39253 - 39312 4.5 - Term 39352 - 39398 9.1 33 16 Tu 1 . - CDS 39414 - 40301 1080 ## COG1940 Transcriptional regulator/sugar kinase - Prom 40373 - 40432 3.6 - Term 40323 - 40369 9.5 34 17 Tu 1 . - CDS 40436 - 42928 2607 ## COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain - Prom 42974 - 43033 4.8 + Prom 42913 - 42972 3.0 35 18 Tu 1 . + CDS 43128 - 43493 354 ## BBR47_21590 hypothetical protein + Term 43513 - 43566 11.4 - Term 43507 - 43549 7.0 36 19 Tu 1 . - CDS 43559 - 47767 3560 ## COG2931 RTX toxins and related Ca2+-binding proteins - Prom 47825 - 47884 2.5 - Term 47973 - 48022 2.2 37 20 Tu 1 . - CDS 48037 - 48888 902 ## COG1801 Uncharacterized conserved protein - Prom 48938 - 48997 3.1 - Term 49061 - 49099 9.1 38 21 Tu 1 . - CDS 49123 - 49341 142 ## - Prom 49367 - 49426 1.5 39 22 Tu 1 . - CDS 49564 - 50844 1515 ## COG2733 Predicted membrane protein - Term 50859 - 50896 0.8 40 23 Tu 1 . - CDS 51059 - 51745 790 ## COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold - Prom 51801 - 51860 5.0 + Prom 51719 - 51778 2.1 41 24 Tu 1 . + CDS 51835 - 52032 154 ## - Term 51826 - 51854 -0.6 42 25 Tu 1 . - CDS 52063 - 53523 1424 ## COG2855 Predicted membrane protein - Prom 53647 - 53706 2.9 + Prom 53536 - 53595 2.7 43 26 Tu 1 . + CDS 53787 - 54698 846 ## COG0583 Transcriptional regulator + Term 54723 - 54750 -0.8 44 27 Tu 1 . + CDS 54920 - 56503 1437 ## PPE_04483 hypothetical protein + Term 56506 - 56543 -0.8 + Prom 56528 - 56587 3.7 45 28 Tu 1 . + CDS 56612 - 57670 1217 ## COG0701 Predicted permeases + Term 57716 - 57750 3.5 46 29 Op 1 4/0.143 + CDS 58380 - 59147 803 ## COG0310 ABC-type Co2+ transport system, permease component 47 29 Op 2 8/0.086 + CDS 59144 - 59431 435 ## COG1930 ABC-type cobalt transport system, periplasmic component 48 29 Op 3 34/0.000 + CDS 59431 - 60237 526 ## COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters 49 29 Op 4 . + CDS 60234 - 61088 892 ## COG1122 ABC-type cobalt transport system, ATPase component + Term 61109 - 61156 11.6 - Term 61165 - 61211 1.2 50 30 Tu 1 . - CDS 61232 - 62914 1896 ## COG0008 Glutamyl- and glutaminyl-tRNA synthetases - Prom 62971 - 63030 3.9 - Term 63211 - 63248 4.5 51 31 Tu 1 . - CDS 63309 - 66536 2953 ## COG1404 Subtilisin-like serine proteases - Prom 66663 - 66722 3.5 52 32 Tu 1 . - CDS 66928 - 68496 559 ## PROTEIN SUPPORTED gi|153833204|ref|ZP_01985871.1| ribosomal protein S15 - Prom 68574 - 68633 4.1 + Prom 68629 - 68688 1.7 53 33 Tu 1 . + CDS 68743 - 69750 714 ## COG0500 SAM-dependent methyltransferases + Term 69856 - 69895 -1.0 54 34 Tu 1 . + CDS 70196 - 70894 712 ## COG0500 SAM-dependent methyltransferases + Term 71047 - 71088 11.0 - Term 71035 - 71076 11.8 55 35 Tu 1 . - CDS 71252 - 72691 1438 ## COG2509 Uncharacterized FAD-dependent dehydrogenases - Prom 72892 - 72951 5.1 56 36 Tu 1 . - CDS 73015 - 73641 622 ## COG1279 Lysine efflux permease + Prom 73706 - 73765 3.4 57 37 Tu 1 . + CDS 73839 - 75290 1393 ## COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs + Term 75313 - 75359 6.2 58 38 Tu 1 . + CDS 75402 - 76031 520 ## BBR47_55730 hypothetical protein + Term 76057 - 76103 6.3 + Prom 76149 - 76208 5.6 59 39 Tu 1 . + CDS 76240 - 76596 434 ## COG2346 Truncated hemoglobins + Term 76663 - 76704 3.1 + Prom 76670 - 76729 3.9 60 40 Tu 1 . + CDS 76787 - 78103 1341 ## COG0232 dGTP triphosphohydrolase + Term 78308 - 78338 4.3 - Term 77954 - 77986 -0.3 61 41 Tu 1 . - CDS 78141 - 79184 789 ## COG2200 FOG: EAL domain - Prom 79220 - 79279 6.1 62 42 Tu 1 . - CDS 79317 - 80261 624 ## Amet_3885 hypothetical protein - Prom 80285 - 80344 7.7 + Prom 80445 - 80504 3.8 63 43 Tu 1 . + CDS 80550 - 81905 1855 ## COG1301 Na+/H+-dicarboxylate symporters + Term 81919 - 81956 5.5 + Prom 82026 - 82085 4.4 64 44 Tu 1 . + CDS 82181 - 84325 2562 ## COG1511 Predicted membrane protein + Term 84332 - 84363 4.1 + Prom 84387 - 84446 4.9 65 45 Op 1 4/0.143 + CDS 84484 - 84930 391 ## COG1846 Transcriptional regulators 66 45 Op 2 35/0.000 + CDS 84949 - 86697 281 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 67 45 Op 3 . + CDS 86687 - 88564 259 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P + Term 88585 - 88629 10.3 - Term 88573 - 88617 11.2 68 46 Tu 1 . - CDS 88817 - 90118 1416 ## COG1253 Hemolysins and related proteins containing CBS domains - Prom 90213 - 90272 3.3 + Prom 90077 - 90136 5.2 69 47 Tu 1 . + CDS 90328 - 90915 294 ## + Term 90945 - 90981 -0.5 70 48 Op 1 . - CDS 90977 - 94150 3680 ## COG2409 Predicted drug exporters of the RND superfamily 71 48 Op 2 . - CDS 94159 - 94626 401 ## Pjdr2_5908 transcriptional regulator, MarR family - Prom 94704 - 94763 5.3 - Term 94788 - 94820 -0.4 72 49 Tu 1 . - CDS 94895 - 96580 1751 ## COG0578 Glycerol-3-phosphate dehydrogenase - Prom 96685 - 96744 2.8 - Term 96594 - 96661 17.5 73 50 Op 1 . - CDS 96746 - 97303 602 ## COG1954 Glycerol-3-phosphate responsive antiterminator (mRNA-binding) 74 50 Op 2 . - CDS 97328 - 98011 867 ## COG1285 Uncharacterized membrane protein 75 50 Op 3 2/0.171 - CDS 98019 - 98759 896 ## COG0584 Glycerophosphoryl diester phosphodiesterase - Prom 98994 - 99053 6.0 - Term 98911 - 98960 12.2 76 51 Op 1 14/0.000 - CDS 99089 - 100447 1759 ## COG1653 ABC-type sugar transport system, periplasmic component - Prom 100467 - 100526 2.5 - Term 100486 - 100529 8.4 77 51 Op 2 38/0.000 - CDS 100550 - 101374 972 ## COG0395 ABC-type sugar transport system, permease component 78 51 Op 3 . - CDS 101371 - 102276 967 ## COG1175 ABC-type sugar transport systems, permease components - Prom 102511 - 102570 8.1 - Term 102564 - 102611 10.2 79 52 Op 1 . - CDS 102639 - 103325 584 ## GYMC10_0970 hypothetical protein 80 52 Op 2 . - CDS 103322 - 103684 264 ## COG1695 Predicted transcriptional regulators - Term 103729 - 103769 -0.9 81 53 Tu 1 . - CDS 103806 - 104216 373 ## COG2764 Uncharacterized protein conserved in bacteria - Prom 104252 - 104311 2.6 + Prom 104223 - 104282 3.1 82 54 Tu 1 . + CDS 104456 - 104743 195 ## gi|315643917|ref|ZP_07897087.1| hypothetical protein PVOR_00035 + Term 104781 - 104820 3.0 - Term 104874 - 104923 11.5 83 55 Tu 1 . - CDS 104925 - 105695 748 ## COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold - Prom 105739 - 105798 6.3 + Prom 105696 - 105755 4.4 84 56 Tu 1 . + CDS 105841 - 106263 481 ## COG1522 Transcriptional regulators + Term 106297 - 106337 4.4 - Term 106280 - 106330 14.5 85 57 Tu 1 . - CDS 106345 - 106545 228 ## COG1278 Cold shock proteins - Prom 106601 - 106660 8.6 + Prom 106566 - 106625 8.8 86 58 Tu 1 . + CDS 106857 - 107114 373 ## COG2261 Predicted membrane protein + Term 107138 - 107195 10.1 + Prom 107252 - 107311 6.7 87 59 Tu 1 . + CDS 107445 - 107915 555 ## gll1895 hypothetical protein 88 60 Tu 1 . - CDS 107924 - 110467 2233 ## COG1199 Rad3-related DNA helicases - Prom 110517 - 110576 3.8 - Term 110627 - 110662 4.2 89 61 Tu 1 . - CDS 110696 - 111172 607 ## COG0597 Lipoprotein signal peptidase 90 62 Op 1 35/0.000 - CDS 111291 - 113165 231 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 91 62 Op 2 . - CDS 113167 - 115110 263 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P - Prom 115160 - 115219 3.3 - Term 115229 - 115271 6.2 92 63 Tu 1 . - CDS 115282 - 115917 762 ## COG2910 Putative NADH-flavin reductase - Prom 115965 - 116024 5.7 - Term 116212 - 116254 8.1 93 64 Tu 1 . - CDS 116345 - 116476 144 ## + Prom 116555 - 116614 3.3 94 65 Tu 1 . + CDS 116792 - 117928 1123 ## GYMC10_0442 copper amine oxidase domain protein + Term 117970 - 118017 11.1 - Term 118045 - 118091 8.1 95 66 Op 1 1/0.229 - CDS 118134 - 119315 1168 ## COG1252 NADH dehydrogenase, FAD-containing subunit 96 66 Op 2 . - CDS 119353 - 119778 408 ## COG2427 Uncharacterized conserved protein - Prom 119903 - 119962 4.2 - Term 120277 - 120321 7.0 97 67 Op 1 12/0.057 - CDS 120366 - 120791 471 ## COG3610 Uncharacterized conserved protein 98 67 Op 2 . - CDS 120807 - 121568 767 ## COG2966 Uncharacterized conserved protein 99 67 Op 3 . - CDS 121624 - 122313 621 ## COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases - Prom 122365 - 122424 3.2 100 68 Tu 1 . - CDS 122547 - 122867 378 ## - Term 123151 - 123189 2.5 101 69 Tu 1 . - CDS 123197 - 124093 945 ## COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase - Prom 124150 - 124209 1.8 - Term 124147 - 124189 6.1 102 70 Tu 1 . - CDS 124219 - 125088 987 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily - Prom 125177 - 125236 2.6 - Term 125167 - 125211 6.4 103 71 Op 1 1/0.229 - CDS 125258 - 125998 897 ## COG4200 Uncharacterized protein conserved in bacteria 104 71 Op 2 2/0.171 - CDS 126000 - 126713 921 ## COG4200 Uncharacterized protein conserved in bacteria 105 71 Op 3 3/0.143 - CDS 126710 - 127624 264 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 106 71 Op 4 40/0.000 - CDS 127701 - 128981 1467 ## COG0642 Signal transduction histidine kinase 107 71 Op 5 . - CDS 129059 - 129736 801 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 129761 - 129820 4.0 + Prom 129786 - 129845 3.2 108 72 Tu 1 . + CDS 129963 - 130874 593 ## COG0515 Serine/threonine protein kinase + Term 130975 - 131019 6.0 - Term 130766 - 130809 4.1 109 73 Tu 1 . - CDS 130878 - 131057 149 ## - Prom 131155 - 131214 1.5 - Term 131181 - 131226 6.4 110 74 Op 1 . - CDS 131272 - 133665 1936 ## GYMC10_1372 hypothetical protein - Prom 133705 - 133764 2.8 111 74 Op 2 . - CDS 133768 - 134640 684 ## COG0583 Transcriptional regulator - Prom 134677 - 134736 7.4 + Prom 134653 - 134712 6.6 112 75 Tu 1 . + CDS 134738 - 135688 1081 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily + Term 135703 - 135753 12.5 - Term 135693 - 135738 13.8 113 76 Tu 1 . - CDS 135790 - 140802 5362 ## COG3325 Chitinase - Term 141258 - 141302 11.1 114 77 Tu 1 . - CDS 141342 - 145439 4860 ## COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases - Prom 145471 - 145530 7.6 + Prom 145491 - 145550 7.1 115 78 Tu 1 . + CDS 145706 - 147166 1649 ## COG0366 Glycosidases + Term 147206 - 147261 18.2 - Term 147589 - 147635 11.2 116 79 Op 1 5/0.143 - CDS 147673 - 148056 345 ## COG0640 Predicted transcriptional regulators 117 79 Op 2 . - CDS 148058 - 148480 508 ## COG3832 Uncharacterized conserved protein 118 79 Op 3 . - CDS 148507 - 148893 381 ## BL00252 hypothetical protein - Prom 148935 - 148994 5.0 - Term 148968 - 149007 6.5 119 80 Op 1 3/0.143 - CDS 149012 - 149503 463 ## COG3708 Uncharacterized protein conserved in bacteria 120 80 Op 2 . - CDS 149570 - 150508 977 ## COG2378 Predicted transcriptional regulator - Prom 150578 - 150637 3.5 - Term 150702 - 150753 11.1 121 81 Op 1 4/0.143 - CDS 150801 - 151358 718 ## COG0794 Predicted sugar phosphate isomerase involved in capsule formation 122 81 Op 2 . - CDS 151365 - 151997 877 ## COG0269 3-hexulose-6-phosphate synthase and related proteins - Prom 152042 - 152101 3.1 - Term 152154 - 152183 1.2 123 82 Tu 1 . - CDS 152296 - 152658 384 ## COG1733 Predicted transcriptional regulators - Prom 152730 - 152789 4.7 + Prom 152712 - 152771 5.3 124 83 Tu 1 . + CDS 152938 - 153969 1220 ## COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases + Term 154093 - 154131 5.1 + Prom 154123 - 154182 4.2 125 84 Tu 1 . + CDS 154255 - 155460 1170 ## COG2124 Cytochrome P450 + Prom 156042 - 156101 8.9 126 85 Op 1 12/0.057 + CDS 156121 - 156675 398 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) 127 85 Op 2 . + CDS 156570 - 156965 310 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) + Term 156983 - 157030 16.4 - Term 156971 - 157018 12.6 128 86 Op 1 . - CDS 157125 - 158627 1375 ## 129 86 Op 2 . - CDS 158624 - 159193 441 ## COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 130 86 Op 3 . - CDS 159261 - 160139 713 ## COG0726 Predicted xylanase/chitin deacetylase - Prom 160173 - 160232 2.0 131 87 Tu 1 . - CDS 160396 - 160635 74 ## - Prom 160665 - 160724 5.2 + Prom 160885 - 160944 4.0 132 88 Tu 1 . + CDS 161024 - 162406 1550 ## COG0334 Glutamate dehydrogenase/leucine dehydrogenase + Term 162433 - 162482 14.8 133 89 Tu 1 . - CDS 162999 - 164363 1290 ## COG1653 ABC-type sugar transport system, periplasmic component + Prom 164981 - 165040 4.2 134 90 Tu 1 . + CDS 165065 - 166876 1933 ## COG0840 Methyl-accepting chemotaxis protein + Term 166972 - 167032 9.4 - Term 166960 - 167020 10.5 135 91 Op 1 . - CDS 167038 - 167538 461 ## Pjdr2_0330 hypothetical protein - Prom 167614 - 167673 3.0 - Term 167646 - 167684 7.6 136 91 Op 2 . - CDS 167700 - 168368 741 ## COG1285 Uncharacterized membrane protein - Prom 168388 - 168447 4.1 137 92 Op 1 . - CDS 168472 - 169779 1241 ## COG2233 Xanthine/uracil permeases 138 92 Op 2 . - CDS 169782 - 170243 499 ## COG0590 Cytosine/adenosine deaminases - Prom 170309 - 170368 5.0 + Prom 170279 - 170338 8.1 139 93 Tu 1 . + CDS 170376 - 171254 830 ## COG0583 Transcriptional regulator 140 94 Tu 1 . - CDS 171256 - 172002 787 ## Pjdr2_3013 hypothetical protein - Prom 172064 - 172123 1.8 - Term 172277 - 172321 8.2 141 95 Op 1 . - CDS 172334 - 172849 502 ## GYMC10_1500 hypothetical protein 142 95 Op 2 44/0.000 - CDS 172934 - 174022 875 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 143 95 Op 3 44/0.000 - CDS 174019 - 175050 772 ## COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component 144 95 Op 4 49/0.000 - CDS 175076 - 175921 887 ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 145 95 Op 5 38/0.000 - CDS 175929 - 176879 287 ## PROTEIN SUPPORTED gi|167855436|ref|ZP_02478201.1| 30S ribosomal protein S21 146 95 Op 6 . - CDS 176938 - 178515 1896 ## COG0747 ABC-type dipeptide transport system, periplasmic component - Prom 178594 - 178653 1.7 - Term 178569 - 178607 1.6 147 96 Tu 1 . - CDS 178758 - 179210 446 ## COG1846 Transcriptional regulators - Prom 179240 - 179299 9.9 - Term 179329 - 179360 3.4 148 97 Op 1 . - CDS 179380 - 180384 1026 ## BBR47_06980 hypothetical protein 149 97 Op 2 . - CDS 180422 - 181213 689 ## COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog - Prom 181337 - 181396 4.7 150 98 Op 1 . + CDS 181645 - 183237 1349 ## COG2508 Regulator of polyketide synthase expression 151 98 Op 2 . + CDS 183262 - 184026 637 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) + Term 184081 - 184131 7.0 - Term 184069 - 184117 5.8 152 99 Tu 1 . - CDS 184147 - 185910 1772 ## COG0840 Methyl-accepting chemotaxis protein - Prom 186133 - 186192 5.7 + Prom 186052 - 186111 6.8 153 100 Op 1 . + CDS 186168 - 187322 1407 ## LKI_04360 hypothetical protein + Term 187349 - 187384 6.0 154 100 Op 2 . + CDS 187408 - 187938 535 ## GYMC10_0571 transcriptional regulator, PadR-like family + Term 187976 - 188019 8.4 + Prom 188020 - 188079 5.1 155 101 Op 1 10/0.086 + CDS 188134 - 189348 1538 ## COG2391 Predicted transporter component 156 101 Op 2 . + CDS 189338 - 189565 316 ## COG0425 Predicted redox protein, regulator of disulfide bond formation + Prom 189606 - 189665 2.4 157 102 Tu 1 . + CDS 189729 - 191129 1120 ## CbC4_0731 hypothetical protein + Term 191148 - 191191 4.1 + Prom 191177 - 191236 1.6 158 103 Tu 1 . + CDS 191278 - 191340 84 ## 159 104 Tu 1 . - CDS 191736 - 191813 76 ## - Term 191843 - 191873 1.0 160 105 Tu 1 . - CDS 191955 - 192974 1115 ## COG2130 Putative NADP-dependent oxidoreductases - Prom 193021 - 193080 5.7 161 106 Op 1 . - CDS 193142 - 193435 202 ## COG0640 Predicted transcriptional regulators 162 106 Op 2 . - CDS 193467 - 193868 372 ## COG1733 Predicted transcriptional regulators - Prom 193919 - 193978 3.3 + Prom 193923 - 193982 5.0 163 107 Tu 1 . + CDS 194067 - 195269 1456 ## COG2814 Arabinose efflux permease + Term 195340 - 195382 13.3 - Term 195328 - 195370 12.5 164 108 Op 1 . - CDS 195388 - 196242 1064 ## COG2199 FOG: GGDEF domain 165 108 Op 2 . - CDS 196232 - 198319 2282 ## Pjdr2_0579 cellulose synthase subunit B 166 108 Op 3 2/0.171 - CDS 198369 - 199622 1341 ## COG1215 Glycosyltransferases, probably involved in cell wall biogenesis 167 108 Op 4 . - CDS 199633 - 201183 1508 ## COG5298 Uncharacterized protein conserved in bacteria 168 108 Op 5 . - CDS 201161 - 202723 1778 ## Pjdr2_0576 hypothetical protein 169 108 Op 6 . - CDS 202748 - 203857 1146 ## Pjdr2_0575 hypothetical protein - Prom 203924 - 203983 3.9 - Term 204063 - 204106 7.4 170 109 Tu 1 . - CDS 204150 - 206060 2142 ## GYMC10_0337 glycoside hydrolase, family 20, catalytic core - Prom 206280 - 206339 2.8 - Term 206311 - 206348 2.1 171 110 Tu 1 . - CDS 206379 - 207185 439 ## Clos_2756 hypothetical protein - Prom 207277 - 207336 2.9 172 111 Tu 1 . - CDS 207421 - 207933 368 ## COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog - Prom 207969 - 208028 3.9 173 112 Op 1 40/0.000 + CDS 208165 - 208842 680 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 174 112 Op 2 . + CDS 208832 - 210331 1287 ## COG0642 Signal transduction histidine kinase + Term 210360 - 210400 10.1 + Prom 210424 - 210483 2.3 175 113 Tu 1 . + CDS 210592 - 211350 602 ## BBR47_56280 hypothetical protein + Term 211450 - 211496 10.0 - Term 211436 - 211485 9.9 176 114 Tu 1 . - CDS 211542 - 215144 3409 ## MTES_2849 hypothetical protein - Prom 215222 - 215281 5.1 + Prom 215215 - 215274 6.6 177 115 Tu 1 . + CDS 215457 - 216944 1839 ## COG3104 Dipeptide/tripeptide permease + Term 216956 - 216993 5.4 + Prom 216978 - 217037 5.2 178 116 Op 1 . + CDS 217190 - 217459 187 ## Pjdr2_2842 transcriptional regulator, ArsR family 179 116 Op 2 . + CDS 217528 - 218643 1096 ## COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family + Term 218659 - 218695 -0.7 - Term 218799 - 218843 7.6 180 117 Op 1 5/0.143 - CDS 218855 - 219673 196 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 181 117 Op 2 . - CDS 219696 - 220127 496 ## COG1846 Transcriptional regulators 182 117 Op 3 . - CDS 220202 - 220327 61 ## - Prom 220480 - 220539 8.0 - Term 220573 - 220610 2.2 183 118 Tu 1 . - CDS 220657 - 222087 887 ## PROTEIN SUPPORTED gi|145634045|ref|ZP_01789756.1| 50S ribosomal protein L21 - Prom 222117 - 222176 9.5 184 119 Tu 1 . - CDS 222240 - 222359 78 ## - Term 222419 - 222456 5.2 185 120 Tu 1 . - CDS 222493 - 223386 569 ## COG0500 SAM-dependent methyltransferases - Prom 223572 - 223631 5.8 + Prom 223531 - 223590 2.2 186 121 Op 1 18/0.000 + CDS 223631 - 224095 363 ## COG1846 Transcriptional regulators + Prom 224100 - 224159 1.8 187 121 Op 2 . + CDS 224179 - 225633 1309 ## COG0477 Permeases of the major facilitator superfamily + Term 225772 - 225805 2.6 188 122 Tu 1 . - CDS 225644 - 227167 909 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) - Prom 227205 - 227264 5.2 + Prom 227261 - 227320 4.0 189 123 Op 1 . + CDS 227434 - 228888 1226 ## COG4990 Uncharacterized protein conserved in bacteria 190 123 Op 2 . + CDS 228936 - 230336 1262 ## COG2866 Predicted carboxypeptidase + Term 230362 - 230412 18.0 - Term 230350 - 230399 19.4 191 124 Op 1 . - CDS 230401 - 230964 569 ## COG4420 Predicted membrane protein 192 124 Op 2 . - CDS 231007 - 231123 96 ## - Prom 231158 - 231217 3.9 193 125 Op 1 . - CDS 231459 - 232520 934 ## PROTEIN SUPPORTED gi|15900201|ref|NP_344805.1| hypothetical protein SP_0267 194 125 Op 2 . - CDS 232575 - 233081 409 ## PPE_01643 hypothetical protein - Prom 233105 - 233164 1.9 - Term 233181 - 233217 4.8 195 126 Tu 1 . - CDS 233250 - 233591 179 ## COG2824 Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism - Term 233844 - 233883 8.5 196 127 Tu 1 . - CDS 234002 - 235399 1577 ## COG1409 Predicted phosphohydrolases - Prom 235454 - 235513 2.8 + Prom 235515 - 235574 5.2 197 128 Tu 1 . + CDS 235602 - 236738 863 ## COG0322 Nuclease subunit of the excinuclease complex + Term 236960 - 237001 0.2 + Prom 237421 - 237480 3.7 198 129 Tu 1 . + CDS 237675 - 237779 91 ## 199 130 Op 1 16/0.000 - CDS 237891 - 239123 1055 ## COG0642 Signal transduction histidine kinase 200 130 Op 2 . - CDS 239148 - 242561 3315 ## COG0784 FOG: CheY-like receiver - Prom 242587 - 242646 5.1 - Term 242725 - 242758 4.1 201 131 Tu 1 . - CDS 242875 - 243495 280 ## PPE_04804 hypothetical protein - Prom 243536 - 243595 4.7 202 132 Tu 1 . - CDS 243644 - 244234 349 ## gi|304408012|ref|ZP_07389662.1| Peptidase S24/S26A/S26B, conserved region - Prom 244367 - 244426 3.9 203 133 Op 1 . + CDS 244720 - 245058 191 ## BBR47_16480 RNA polymerase sigma factor 204 133 Op 2 . + CDS 245042 - 245308 168 ## BcerKBAB4_5577 RNA polymerase sigma factor 205 133 Op 3 . + CDS 245415 - 246068 839 ## BBR47_16490 hypothetical protein + Term 246104 - 246147 12.4 206 134 Op 1 11/0.057 + CDS 246302 - 247042 339 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 207 134 Op 2 . + CDS 247042 - 247773 385 ## COG0463 Glycosyltransferases involved in cell wall biogenesis + Term 247841 - 247891 7.3 - Term 247837 - 247870 5.4 208 135 Tu 1 . - CDS 247937 - 249418 1238 ## COG0397 Uncharacterized conserved protein - Prom 249525 - 249584 3.5 - Term 249958 - 249994 7.1 209 136 Tu 1 10/0.086 - CDS 250002 - 250769 721 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 210 137 Op 1 36/0.000 - CDS 250870 - 251913 957 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 211 137 Op 2 . - CDS 251888 - 252658 275 ## PROTEIN SUPPORTED gi|225084369|ref|YP_002657150.1| ribosomal protein S16 - Prom 252724 - 252783 2.9 212 138 Tu 1 . + CDS 252639 - 252797 63 ## 213 139 Op 1 40/0.000 - CDS 252805 - 253797 804 ## COG0642 Signal transduction histidine kinase 214 139 Op 2 . - CDS 253794 - 254495 838 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 254646 - 254705 4.8 215 140 Op 1 . + CDS 254515 - 254682 56 ## 216 140 Op 2 . + CDS 254731 - 255732 293 ## COG0789 Predicted transcriptional regulators - Term 255735 - 255769 1.9 217 141 Op 1 . - CDS 255799 - 257256 821 ## COG4188 Predicted dienelactone hydrolase 218 141 Op 2 . - CDS 257297 - 257368 84 ## - Prom 257396 - 257455 2.0 - Term 257381 - 257419 -0.5 219 141 Op 3 . - CDS 257467 - 257955 496 ## COG3871 Uncharacterized stress protein (general stress protein 26) - Prom 258026 - 258085 3.7 - Term 258215 - 258253 9.3 220 142 Op 1 1/0.229 - CDS 258330 - 258773 427 ## COG3832 Uncharacterized conserved protein 221 142 Op 2 . - CDS 258776 - 259219 484 ## COG3832 Uncharacterized conserved protein 222 142 Op 3 . - CDS 259216 - 259722 294 ## COG0789 Predicted transcriptional regulators - Prom 259761 - 259820 5.2 + Prom 259839 - 259898 5.1 223 143 Tu 1 . + CDS 259923 - 260516 421 ## BcerKBAB4_1139 hypothetical protein 224 144 Tu 1 . - CDS 260901 - 261314 326 ## Bsph_3288 regulatory protein, MarR - Term 261326 - 261368 9.2 225 145 Op 1 10/0.086 - CDS 261382 - 262116 282 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 226 145 Op 2 9/0.086 - CDS 262128 - 262877 210 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 227 145 Op 3 . - CDS 262921 - 264186 915 ## COG0477 Permeases of the major facilitator superfamily - Prom 264369 - 264428 5.7 - Term 264422 - 264483 8.1 228 146 Tu 1 . - CDS 264556 - 266658 1214 ## GYMC10_6224 conserved hypothetical cytosolic protein - Term 267026 - 267081 2.2 229 147 Tu 1 . - CDS 267086 - 268168 913 ## GYMC10_6226 ankyrin - Prom 268193 - 268252 3.4 230 148 Tu 1 . - CDS 268448 - 269185 703 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - Prom 269341 - 269400 5.5 + Prom 269210 - 269269 2.6 231 149 Tu 1 . + CDS 269381 - 269542 155 ## COG0477 Permeases of the major facilitator superfamily + Term 269623 - 269665 6.8 - Term 269606 - 269657 8.3 232 150 Op 1 . - CDS 269689 - 270777 333 ## COG4292 Predicted membrane protein 233 150 Op 2 . - CDS 270784 - 271299 235 ## GYMC10_6227 hypothetical protein 234 150 Op 3 . - CDS 271330 - 272076 407 ## GYMC10_6228 hypothetical protein - Prom 272147 - 272206 3.2 - Term 272221 - 272264 8.5 235 151 Tu 1 . - CDS 272276 - 273763 1204 ## COG0579 Predicted dehydrogenase - Prom 273882 - 273941 9.7 - Term 274062 - 274098 3.5 236 152 Op 1 . - CDS 274166 - 274831 707 ## COG1842 Phage shock protein A (IM30), suppresses sigma54-dependent transcription 237 152 Op 2 . - CDS 274833 - 275333 337 ## 238 152 Op 3 40/0.000 - CDS 275375 - 276685 781 ## COG0642 Signal transduction histidine kinase 239 152 Op 4 . - CDS 276675 - 277349 382 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 277377 - 277436 5.4 + Prom 277336 - 277395 5.2 240 153 Tu 1 . + CDS 277555 - 277686 107 ## + Term 277747 - 277773 1.7 - Term 277735 - 277761 1.7 241 154 Tu 1 . - CDS 277792 - 278409 227 ## GYMC10_6234 hypothetical protein - Prom 278572 - 278631 4.7 - Term 278574 - 278617 1.4 242 155 Op 1 17/0.000 - CDS 278648 - 280357 1202 ## COG1178 ABC-type Fe3+ transport system, permease component 243 155 Op 2 7/0.086 - CDS 280375 - 281382 775 ## COG3842 ABC-type spermidine/putrescine transport systems, ATPase components - Prom 281402 - 281461 2.6 - Term 281402 - 281443 9.0 244 156 Tu 1 . - CDS 281464 - 282561 1059 ## COG1840 ABC-type Fe3+ transport system, periplasmic component 245 157 Op 1 . - CDS 282664 - 283500 261 ## COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I 246 157 Op 2 . - CDS 283503 - 284651 402 ## COG1609 Transcriptional regulators - Term 284972 - 285036 10.0 247 158 Tu 1 . - CDS 285117 - 286670 378 ## GYMC10_4454 tetratricopeptide TPR_2 repeat protein - Prom 286829 - 286888 5.2 + Prom 286734 - 286793 5.3 248 159 Op 1 . + CDS 286915 - 287553 196 ## GYMC10_2787 pentapeptide repeat protein 249 159 Op 2 . + CDS 287625 - 288446 373 ## COG0789 Predicted transcriptional regulators 250 159 Op 3 . + CDS 288516 - 289280 525 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) + Term 289291 - 289331 6.5 + Prom 289461 - 289520 3.2 251 160 Tu 1 . + CDS 289541 - 290611 630 ## Pjdr2_6189 NAD-dependent epimerase/dehydratase + Term 290629 - 290673 9.1 - Term 290621 - 290657 4.8 252 161 Tu 1 . - CDS 290678 - 291049 268 ## COG1733 Predicted transcriptional regulators - Prom 291164 - 291223 4.9 253 162 Tu 1 . - CDS 291318 - 291620 65 ## - Prom 291807 - 291866 2.5 + Prom 292428 - 292487 7.2 254 163 Tu 1 . + CDS 292603 - 292983 197 ## COG1733 Predicted transcriptional regulators + Term 293145 - 293197 -0.8 + Prom 293182 - 293241 4.4 255 164 Tu 1 . + CDS 293285 - 294448 789 ## COG0133 Tryptophan synthase beta chain + Term 294465 - 294514 5.2 - Term 294457 - 294498 -0.8 256 165 Tu 1 . - CDS 294600 - 295214 237 ## CCV52592_0510 hypothetical protein 257 166 Op 1 . - CDS 295304 - 296002 236 ## 258 166 Op 2 . - CDS 296022 - 296192 160 ## Aflv_1611 hypothetical protein Predicted protein(s) >gi|333604167|gb|AFDH01000112.1| GENE 1 67 - 1680 973 537 aa, chain - ## HITS:1 COG:BH1109 KEGG:ns NR:ns ## COG: BH1109 COG4468 # Protein_GI_number: 15613672 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose-1-phosphate uridyltransferase # Organism: Bacillus halodurans # 18 531 7 506 508 531 52.0 1e-150 MNTDLEREKAQNQADQAALVVERLVSFALAKGMIGSLDVSAARNALLDALGLPEPYQGAD GNAEDETVAAEPGEMLEVLLDFAYIRGRFEEDTTTYRDLFDARLMGLLMPRPSEVVRQFG EITKEHGVRKAADWFYELCINSNYIRMDRIRKNGYWLAPTEYGNLEITVNLSKPEKDPKE IALLRTLKQSGYPQCLLCVDNVGYAGRLDHPARQNLRILPLTIDGEAWCFQYSPYVYYNE HCIVLNEKHVPMKISERTFRRLFDFIEQIPHYFVGSNADLPIVGGSILSHDHFQGGNHKF PMELAPVERKFASDTYPGVSVGIVRWPMSVLRLEGSGREDVLRAADMLLTAWRAYSDPSA DIAAFTQTADGVRVPHNTVTPIARFNSSGQYELDLVLRNNRTSEEHPDGIFHPHRNLHHI KKENIGLIEVMGLAVLPGRLQEEISRIAGFLTGDSAWNGAEGLEAGHPLEKHAAWIGELV AAGGTALSLQEAHELLQREIGGIFKRVLEDAGVFKRTDAGQAAFGRFLGSLGFVPAE >gi|333604167|gb|AFDH01000112.1| GENE 2 1727 - 2719 922 330 aa, chain - ## HITS:1 COG:CAC1429 KEGG:ns NR:ns ## COG: CAC1429 COG1087 # Protein_GI_number: 15894708 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose 4-epimerase # Organism: Clostridium acetobutylicum # 1 326 1 326 327 445 64.0 1e-125 MAIMVTGGAGYIGSHAVAELLARGEEVVIVDNLQQGHRDAVLGGKLYEGDLRDEAFLDTV FRENEIDAVIHFAANSLVGESMTDPAKYYHNNVYGTLCLLEKMKKFDVKRIVFSSTAATY GEPENTPILETDRTEPTNAYGETKLSMEKMIKWFDHAHGIKSVSLRYFNAAGAHESGRIG EDHHPETHLVPLILQVALGQRSHISVFGEDYATPDGTCIRDYIHVSDLADAHVLAVEKLR QGGESGVYNLGSGNGFSVKEVIDIAREVTGHPIPAVVEARRSGDPAVLIASSDRARQDLG WKPKRDNLQAIIASAWAWHQAHPEGYADKK >gi|333604167|gb|AFDH01000112.1| GENE 3 2805 - 3980 1051 391 aa, chain - ## HITS:1 COG:BS_galK KEGG:ns NR:ns ## COG: BS_galK COG0153 # Protein_GI_number: 16080871 # Func_class: G Carbohydrate transport and metabolism # Function: Galactokinase # Organism: Bacillus subtilis # 7 391 5 389 390 390 51.0 1e-108 MADLNLLKTQFTELYGGAEKDITVFHAPGRVNLIGEHTDYNGGYVFPAALTFGTTLLLRK NKEGLLRMASTNFTHKGSCSLEDVVYREEDDWMNYPKGVVAQLQQKGQGPRSGYDMLYHG EIPNGAGLSSSASIEVVTGYGLLEAEGYPADRVELALLAQKAENEFMGVNCGIMDQFAVA NGRKDHAILLMCDTLEYELVPFQSGSYKLVIGNTNKRRGLVDSAYNERRSQCEQAVRDLQ TRFPDLTLLGQISLEQFEANKDAIKDDIVRRRAQHVVEEIDRVLKSIDVLKANDLEAFGR LMTGSHESLRDLYEVTCRELDVMVEAALSVPGVLGSRMTGAGFGGCTVSLVHEDSIEAFR EKVGSSYKEQTGLAADFYVCSIGDGVSRIQG >gi|333604167|gb|AFDH01000112.1| GENE 4 4279 - 5139 699 286 aa, chain + ## HITS:1 COG:BH2229 KEGG:ns NR:ns ## COG: BH2229 COG2207 # Protein_GI_number: 15614792 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Bacillus halodurans # 22 285 19 280 287 218 40.0 1e-56 MKREPTYYVVSNPEPPEDTALHILFSGESQTKPLHRLGPKVYDYFLIHTVISGRGQFTAA GRERLLGPGDSFCIAPEQLVGYEADEADPWRYCWLAVTGAEAAAHMRKAGFTPEQPVIHT AHAGSRVPALFRRLQRALRHKSGTASLRALGYLHLLLAEYADAARPPLPEPGKAHSRTEV TVQQMLHYLSAQYAEDISIESMAEALGYNRAYLSRLFKEHTGQTPVSFLSKLRVDKARQL LRERLELTIEQIAFSVGFRDPLYFSKQFRRWYGLSPTEYRSDMIRM >gi|333604167|gb|AFDH01000112.1| GENE 5 5265 - 6041 684 258 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_0601 NR:ns ## KEGG: Pjdr2_0601 # Name: not_defined # Def: prolipoprotein diacylglyceryl transferase # Organism: Paenibacillus # Pathway: not_defined # 1 247 1 242 253 327 73.0 3e-88 MTFPVYINLGFIRLHPHLVFEALAYFIGFRLYLYTRSKEKLQASQALWVLVGATLGAAAG SKALYWLEDPALTLQRWNDVSYLMEGKTIVGGLLGGLIGVEWTKKRIGHTRSTGDDMALP LLTGMMIGRIGCFLTGLDDHTYGTPTGWVTGVDFGDGILRHPTQLYEIAFLLLLGITILA LKNRARHRSVPLPDGMSFIIFMGGYLLFRLLIDFIKPTPHPYAGLNNIQLACIAGLIYYT LLLWRKLSAKPTLIGKGT >gi|333604167|gb|AFDH01000112.1| GENE 6 6047 - 7459 1241 470 aa, chain + ## HITS:1 COG:Rv3729_1 KEGG:ns NR:ns ## COG: Rv3729_1 COG1964 # Protein_GI_number: 15610865 # Func_class: R General function prediction only # Function: Predicted Fe-S oxidoreductases # Organism: Mycobacterium tuberculosis H37Rv # 9 458 1 464 465 330 39.0 3e-90 MPTKNRPYLFYELTNSICSQCLRKVEAKVIIEDENVYLLKYCGRHGREKVLISDDAEYYK RCREFLKPAEMPQHWNTPIRYGCPYDCGLCPDHEQHSCLTLLEITDKCNLQCPICYAESS PKRETWRSLEQIETMLNAIVRNEEEPDIVQISGGEPTIHPQFFEILDLAKTKPIKHLMVN TNGLRIAQDREFVRKLSQYMPGFELYLQFDSFEEEALRELRGVDLRDVRRRAIEHLNEFN ISTTLVVTLKKGLNDSEVGDIIRYGLQQRAVRGVTFQPVQVAGRTEAFDPAKDRLTLSEV RRMIIEQSGIFQPEDIIPVPCHPDCLAMGYALKLGGQAIPLTGMIDPQILLEGGRNTIVF EQDQTLKDQVFDLFSTAHSPESSALSLKNLLCCLPSVAVPEHIGYDNVFRVLIMQFLDPY NFDVRSVKKSCVHIAHPDGRIIPFDTYNLFYRDGREALLEELRAETGGLA >gi|333604167|gb|AFDH01000112.1| GENE 7 7456 - 7890 142 144 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_0599 NR:ns ## KEGG: Pjdr2_0599 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 72 140 33 101 107 76 55.0 3e-13 MSDYENDPAKSGTPSEEGTSPKSGTEKETESTTNSELGDRAADTGFGQTSSLPSHEHGGS DRPHRPWKGLDVWKGIGFVALGHLLWLFAIPMYFGIGIVQMLYVLPLLLIFSKRAAVVQG ILIGAGITFLLNAACFGYVMFSLG >gi|333604167|gb|AFDH01000112.1| GENE 8 7957 - 8844 321 295 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_5599 NR:ns ## KEGG: GYMC10_5599 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 2 233 8 245 300 79 28.0 1e-13 MVIVFLLALGSWAGNLWVYEKNQLPEPVFLSHFIDLPLEQGTSFPLSYLENHRGLHIVNV EVPELPHASINFLNKNQYNYQNYQTVLIALEQPAQEAEQPTSPLHIAQVRARFSDGSSRM LDIGHVTLTPTGKNPDKRSLFDFSSGGSSNQNAGYTLAATKEDLILTGIENPNPVQSSPR MNLYIDTLSLEQEPGYLTSLRSGDKVEGLPAEDISFPLAVKKGSYVRLSYRFEDANTATS EHKGTKEFNQIEEAVRLKAQAPDGFKDDMAVHIRFESDLSDSDIQKIVQARRELP >gi|333604167|gb|AFDH01000112.1| GENE 9 8845 - 9450 268 201 aa, chain + ## HITS:1 COG:no KEGG:Amet_4221 NR:ns ## KEGG: Amet_4221 # Name: not_defined # Def: hypothetical protein # Organism: A.metalliredigens # Pathway: not_defined # 5 149 6 154 194 70 31.0 3e-11 MSRLYFRISWGLTLTFLHFRIQSVDLLPDFIGFWMAASALGELGKREQAFRIARGFAIPL IFLSLPNEINLGGAPVTDQPFSFFWFSLGLVNSALLLAFIYYLCTGIISAAARSSLPELA QSAHICRSVFLAVTGATLILSPLALNMPEAWQYLLIALGIIGFLSGISIILLLRRAGQLL GPLEPDPDLRESILSGEDKNT >gi|333604167|gb|AFDH01000112.1| GENE 10 9589 - 10548 1360 319 aa, chain - ## HITS:1 COG:BS_yufQ KEGG:ns NR:ns ## COG: BS_yufQ COG1079 # Protein_GI_number: 16080209 # Func_class: R General function prediction only # Function: Uncharacterized ABC-type transport system, permease component # Organism: Bacillus subtilis # 3 319 4 319 319 280 55.0 4e-75 MSLDILGQLINTTLVFSTALIFAALGGIFSERSGVTNIGLEGLMVSGAFAAAVSTFYAQE AGMGSMSPWIGLLAALVFGVLFSLIHAVATITFKSDQVISGVVINFLAAGVTVYLVKLLF EGAGQTETLTEVFSKWAIPGLSQIPVLGYGIFTAYPTTYIALILVAVSYYVLFKTPFGLR LRSVGEHPSAADTVGVNVRRMRYIGVMLSGAFAGLGGATIALTTTSNFSHNTISGQGYIA LAAMIFGKWHPVGALGAAVFFGLSQAIRNYVQLFEWSQSIPQEFIFMLPYVLTILVLAGA VGRAYPPAALGEPYDPGKR >gi|333604167|gb|AFDH01000112.1| GENE 11 10549 - 11628 1270 359 aa, chain - ## HITS:1 COG:lin1427 KEGG:ns NR:ns ## COG: lin1427 COG4603 # Protein_GI_number: 16800495 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Listeria innocua # 14 356 9 350 350 278 49.0 9e-75 MNKVMKFFMRDSAIIPLAAIVLGFVFGAIVMLAGGYNPITAYSSLFSRVFGNMYDFGETI REITPLILTGLAVAFAFRAGLFNIGGEGQFIVGMTGASFVGIKLGGLPAIIHAPLAIIVG AVLGGLWAAIAGYLKAKRGVNEVITTIMLNWIALYLANYTVNHFLLLKGQQRSVDIEPTA SVSLGWLSAMFDNARLHWGTLFAILAAVFFYFFLWKTKQGYELRAVGHNTNAAEYAGMNV NKNIVKAMFISGMFAGLAGVFEVLGVFHYQTVMPASPGYGFDGIAVALLGLTNPFGVLLA ASLFGILTYGSAGMSFGADVPPELIRIVIGSIIFFVAAQGIVRWVIAPLYFKRKKEKVV >gi|333604167|gb|AFDH01000112.1| GENE 12 11621 - 13159 1526 512 aa, chain - ## HITS:1 COG:BS_yufO KEGG:ns NR:ns ## COG: BS_yufO COG3845 # Protein_GI_number: 16080207 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport systems, ATPase components # Organism: Bacillus subtilis # 7 508 4 505 510 631 66.0 1e-180 MSAATPVVELKQITKRFPGIVANDSISLKLQKGEIHALLGENGAGKSTLMNIVFGLYQPD EGGIEVNGQPVLIDSPNKAIELGIGMVHQHFKLVQPFTVTENIILGMEPKKGMNIDYKSA AEQVRKLSEQYGLQVNPHAKIQDISVGMQQRVEIVKTLYRGADILIFDEPTAVLTPQEIT ELMDIMKRLVAEGKSIILITHKLKEIMQISDTVTIIRRGKVIDTVKTSETTTRELAEKMV GRSVSFKVDKKPAQPKGPVLQVRDVKAKSHDGLPVLNGLSFDVKAGEILGIAGVDGNGQS ELIEALTGLRKVDSGSIKLLDKEIVNRSPRHISEAGVSHIPEDRHKHGLVLDFSMSENMV LQTYHRPAFNRGGFLNYEAIDKQAERLIEAFDVRTPSIHTKARSLSGGNQQKAIIAREID RNPDLLIAAQPTRGLDVGAIEFVHKQLIAQRDQGKAVLLISFELDEILNVSDRIAVIYEG EIVGEVLPEETNDQELGLMMAGSMKREGVTHE >gi|333604167|gb|AFDH01000112.1| GENE 13 13311 - 14351 1200 346 aa, chain - ## HITS:1 COG:BS_yufN KEGG:ns NR:ns ## COG: BS_yufN COG1744 # Protein_GI_number: 16080206 # Func_class: R General function prediction only # Function: Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein # Organism: Bacillus subtilis # 9 346 1 342 350 277 48.0 2e-74 MKNFFKLSLVMMLAFTLVLAGCGKKADNGGAAPSGNAAGGEKKSDVKIGMVTDVGGVNDK SFNQSAWEALEKLKKDTGISTKYLQSKADSDYVPNLNQFVQGKYNLTWGIGFVIADAMKT VAQQNPTANFAIIDNVVEAPNVQSITFAENEGSFLVGVVAAKMTKSNKIGFVGGMDIPVI KRFEAGFKAGVAAVNPDAKVLINYTGAFDKPDLGKAAAATMYNDGADIIFHSSGATGNGV FNEANDRIKQGKKVWVIGVDKDQSLEFGDQVTLTSMVKGVEEAVTKYSKMVVDGNFKPGA PVTLGLKDNGVGLASTSSKNVPADVLKLADEYKEKIIKGEIKVPEQ >gi|333604167|gb|AFDH01000112.1| GENE 14 14601 - 15857 1251 418 aa, chain - ## HITS:1 COG:BS_ilvA KEGG:ns NR:ns ## COG: BS_ilvA COG1171 # Protein_GI_number: 16079236 # Func_class: E Amino acid transport and metabolism # Function: Threonine dehydratase # Organism: Bacillus subtilis # 5 418 9 422 422 539 64.0 1e-153 MSNPSTVTVEEIIRANHALSRVIEPSPLQRSELLSRQYDCNIYLKREDLQVVRSFKIRGA YNVIQSLTEEERSRGVVCASAGNHAQGVAYSCNHLGIEGKIFMPTTTPRQKISQVKMFGG PYVEVVLIGDTFDDSSTQARIYCERENKVFIHPFDDARTIAGQGTVGLEVLNQMPVSPDF IFTSIGGGGLAAGVGAYVKAVSPETAVIGVEPEGAAGMQRSMEEGRVVTLETVDKFVDGA AVKQVGEMTFEICRHVLDDIVLVPEGKECTTILDLYNNNAIVIEPAGALPVAALDAYRSQ IAGKNVVCVISGGNNDIDRMQEIKERSLIYEGLKHYFLVNFPQRAGALREFLEEVLGPTD DITRFEYMKKTNRDNAPALVGIELKNKDDYEGLISRLSKKDINYVEINNDPTLFNLLI >gi|333604167|gb|AFDH01000112.1| GENE 15 16040 - 19372 3317 1110 aa, chain - ## HITS:1 COG:SA2056 KEGG:ns NR:ns ## COG: SA2056 COG0841 # Protein_GI_number: 15927841 # Func_class: V Defense mechanisms # Function: Cation/multidrug efflux pump # Organism: Staphylococcus aureus N315 # 1 1102 2 1051 1055 782 40.0 0 MRGIIRYSLNNKLVIWLLTILVTAAGIYAGLGMKQETLPNLEVPVLTVTTVYPGAAPEEV ADRITGPLEQKVRSLDGVDVVSSTSMENVSSIVMEYSYKKDMDKAASEVKEAVADFVLPS GAQETKVSKININAFPVVSLSVAGDKQSLDELTRQIESDLLPALEGVPGAASVEISGQHQ QEVRLTFDRDKLKTYGLSEDTVKGIIQGAAVQVPLGLYEVGRTEKTLVVDGNVKSLDDLR NLEIPLVPGGAGSAGAAGPAGSGSGAAAGGAGGAPGAAPGAGVAAAPGSAAGAGRVGGAV PTPAGAAGLPTVKLAELAAIELADRADSISRTNGKESIGIQVVKAPDANTVDVVNAVKAK ADEFRQANSGVETVIMLDQGKPIEDSVNTMLSKAVFGALFAVLIIMLFLRNWRTTLISIV SIPLSLLIGILLLQQMDITLNIMTLGAMTVAIGRVVDDSIVVIENIYRRMSSPSEPLRGK ALIREATREMFMPILSSTIVTIAVFLPLGFVSGPVGQLFLPFALTMVFALLASLLVAITI VPMLGHSMFRRRLERMGPAPVPAYAEGGAPAALPLGVDPAESIRLRVRGKGQNRRGPDET GRLGRFYRRVLDKTLNHKLIAFGTAILLLGGSLLLATRVGVSFLPEEEQKYAMVTYTPSP GETLDDVKRKALEAEKYVLGRSGVRNLQYSVGGQNPMSPGPSKSALFYVEYDPEFADFTA EKKRLVQGLTDTVQGSWKPMDMGGGVGGSKLSLYVYGEKLDEIRTAADKIQALMKNRPEF DKVASSLSESYGQYTIVADPAKLSKLGLTAGQIAMAFNRDRERPVLTKVGVEDKEVDVYV QADKKTYADLSAIENSTITSPLGVEVPLKDVAKVEEGQSPNAVTHRDTKLYAEVSADITS KDVGATSTGLKSEIDKLGLPSSVRIDFGGVTEQINETFSQLGLAMIAAVAIVYLVLVMFF GGALTPFAILFSLPFTIIGAIVALLVTGETLSVSAMMGALMLIGIVVTNAIVLLDRVIHN EKSGMRTREALLEAAATRLRPILMTALATVGALLPLAFGFESGGLISKGLAVTVIGGLIS STLLTLIIVPVVYEFLAKFRRRRPASELED >gi|333604167|gb|AFDH01000112.1| GENE 16 19588 - 21909 2414 773 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_5849 NR:ns ## KEGG: Pjdr2_5849 # Name: not_defined # Def: S-layer domain protein # Organism: Paenibacillus # Pathway: not_defined # 10 773 10 776 786 438 36.0 1e-121 MKIILKAGTAVVTSALLFGTVTPVMASKAVTGASASVANPVTDQGKEQIDISQEEVKITK EQAVELAKKYVALPEGFSLQGANLSVSRGFGGKPAKTWNLNFSHKEKKDYYSYLSYTLDA DSGALLGYNFSSKNPDSKPVYPPKTSLDQAKTIASDYIAKLSPELQKQVKYYDLRESSRK TPLNVYEDYRFSFERVVDGVPFPQNNITVAVDSEGHLSDYRVYWDKDVTFDKKEGVITSE QADKAFRTQAEPVLQYLLPYQSKELKPALSYSMAALQIDAKTGKPLYESKAPATVKTLTE QPQSGTGTAVTTKDAALKRAQQLVKIPADAKLEEANYSEYENESTKQTEANWNFQWALPG KDGAKDNRGYVSLAIDAKTGELTNFSSYDYSSSRTVKPEEVKVSFEEAKGKAVDFVKKTN PSYTNQLVLETTEAPKTDSKIVGVDQDNVYTFLFSRFIDGVRVENDNIHVGVDKRTGDVQ NSYVNISKLTYPAKKPAVLDKDKAKELLLSQYQLRLVYQSVGIEGQIPPGIPIERYNILV ASGKYPADSQNQKAQLVYTLENKYENIAYFLDAESGKWRNRNNGEVISLEPVKVDDITGH WAQNELQLMLDYQALEVKDGKVKPDQSIKRGELIKMLVIADSGGGYYPAGAMDSRKNSFK DVEKSNAYFSYVETALDRKWIDRTSDEFNPEQPITREEMASLIVRALNYKKLTEFDNVFN RNFTDASELKNIGNAAIVTGMGIMSADGGKFSPKLEVTRAQAATAFYRYLQKR >gi|333604167|gb|AFDH01000112.1| GENE 17 22074 - 23021 708 315 aa, chain - ## HITS:1 COG:BS_ywjD KEGG:ns NR:ns ## COG: BS_ywjD COG4294 # Protein_GI_number: 16080773 # Func_class: L Replication, recombination and repair # Function: UV damage repair endonuclease # Organism: Bacillus subtilis # 1 313 1 316 320 276 42.0 3e-74 MEVRIGYVAQALAIYHNTPSSTFTYKRFKEGPYEASLAKAIEVGRRNLEATRRILYYNAA HGIRLYRLSSSLIPLATHPDVHIGVKEVYREELAELGAFARRHDIRLSMHPNQFTLLNGS DAVVDAAIRDLDYHADILDGMGMGSDCIINIHVGGAYGDKRASAERLVSNLPRVPGRIMK RLTLENDDKTYTAEETLSVCKRSGVPMMFDLHHDWCNPSSHPGIELLPQIAETWKDRPMK IHVSTPKNAKEFRSHADYVDAGPLLIFLKACKEEGLDRLDVMVEAKRKDHACLKLAEDLS SVRGIRRLDGGVLSM >gi|333604167|gb|AFDH01000112.1| GENE 18 23113 - 23199 67 28 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MAGIPLPMAADIIPVWLSAGTFRNRTPQ >gi|333604167|gb|AFDH01000112.1| GENE 19 23239 - 23874 672 211 aa, chain + ## HITS:1 COG:BS_yvaB KEGG:ns NR:ns ## COG: BS_yvaB COG1182 # Protein_GI_number: 16080407 # Func_class: I Lipid transport and metabolism # Function: Acyl carrier protein phosphodiesterase # Organism: Bacillus subtilis # 1 211 1 211 211 285 63.0 3e-77 MSTLLYITAHPHDDRASYSMAVGKAFLDAYRENHPGDPIVTLDLYKAYIPHIDTDVFSGW GKLRSGSSFDQLSEEEKKKVTRFGELTDQFVAGDKYVFVTPMWNFSFPPVMKAYIDTICT AGKTFKYTENGPVGLLTGKKALHVYACGGIYSEGPAAGSDFGSPYLKTIMSFFGIPSFET LYVEGMAQFPERAEQIKQDAIKNAQEKARTF >gi|333604167|gb|AFDH01000112.1| GENE 20 24009 - 24314 449 101 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|167464323|ref|ZP_02329412.1| ## NR: gi|167464323|ref|ZP_02329412.1| hypothetical protein Plarl_17489 [Paenibacillus larvae subsp. larvae BRL-230010] # 1 98 1 98 102 79 46.0 6e-14 MSSETKRVLNVIQLIVEIGIIIGYVVGLIPFGFLWSGGWVVPLVFVSAVIGLINSNRTLL PAVVNIVLAFLSYIPLVGYVTRIVGLLVSAYNISLIRRDQY >gi|333604167|gb|AFDH01000112.1| GENE 21 24735 - 26822 233 695 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 441 660 131 351 398 94 32 5e-18 MHTGKRLVQYALHHKKLFILALLMLTVAVAAELSGPFIAKRMIDTHIIGIEQPWYKVPRE SGNAGNTVENGDTVSYAGDVYKRGDRFAEGEARGDEARLLQVGTRFVFVSGPIAFDGQRS WQDGKLTVARGGESAEYEAKSLTKGELYVFYRPELAQLIRLALLYLGLLAVAAVFTFGER YMLQVSANRVIQKLRLDVYRQIQRLPIHYFDNLPAGKVVSRVTNDTEAVRDLFVTVLANF FTGFVYITGIFIALFLLDPKLGAICLLIVPLLVVWVIVYRKYASRYNKIIRSRLSDINGM INEAIQGMTIIRAFRRQKETMEEFETLNEDYLKHQQKLQSLNALTSHNLVGVLRNISFAL LLWHFGGAAMGTGAESVISFGVLYAFIDYLNRLFQPITGMVNQLATLDQSIISAGRVFEL MDEPGEDVTEGRLPRYKGDVSFEQVSFAYKEDYVLKNISFEAKQGQTVALVGHTGSGKSS IMNLLFRFYDPQKGTIRVDGQDITAMPKQLLRQHMGIVLQDPFLFTGTIASNVSLGDGTI SREKVDAALRDVGGERIFANLPGGFDEPVLEKGSTLSAGQRQLISFARALAFDPAILILD EATANIDTETEAVIQAALDVVKKGRTTFIIAHRLSTIRSADLILVLHRGEIVERGNHEEL LELGGRYSQMYRLQQGGSAAGAAPGGVTTGIAAST >gi|333604167|gb|AFDH01000112.1| GENE 22 26829 - 28580 270 583 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 339 561 132 353 398 108 34 2e-22 MFSILQKLGWFFKKHWIRYTVAITLLIVAGIAEIIPPKILGYAVDEIHMGSITADRLIAM ISWTLGITVLIYLMTYVWMYQLFGGAFLVERVLRSRFMRHLLKMTPTFFEKYRTGDLMAR ATNDLRSVSATAGFGILTLVDSSAFMLVILFTMGITISWKLTFAALLPLPFIALAMKFYG KTIHERYTTAQDAFGQMNDQVLEATAGVRVLRAYVQEANEQERFRELTEDVYDKNIAVAK IDALFDPTIKLLVGASYLIGLGYGAYLVFQTELTLGQLLSFNIYLGMLIWPMFAIGELIN IMQRGNASLDRVNETLGYRPDVQDVPQPAADAKPGTIGFREAAFKYPSSGTPNLEDIGFT LRQGETLGVVGRTGSGKSTLLKQLLRQYPAGSGSITIGGVPIQQIPLEQLQSWIGYVPQE QILFSKTVRENIKFGKSDASEDDVLQAIERAAFTQDIDTLANGLDTLVGEKGVALSGGQK QRVSLARALIADPEILLLDDAMSAVDARTEARIIENIRRERAGKTTLISTHRLSAIEHAD RILVLDEGRIVEAGTHEELLALGGWYKEQYERQQVESNLTEAG >gi|333604167|gb|AFDH01000112.1| GENE 23 29059 - 30084 1045 341 aa, chain - ## HITS:1 COG:BH0877 KEGG:ns NR:ns ## COG: BH0877 COG1294 # Protein_GI_number: 15613440 # Func_class: C Energy production and conversion # Function: Cytochrome bd-type quinol oxidase, subunit 2 # Organism: Bacillus halodurans # 1 341 1 341 346 333 54.0 2e-91 MSDVTLAVSVLWVFLFTYSILGSIDFGAGFWSMYFSGQHHTKAGALANRYLSPTWEVTNV FLVLFVVALAGFFPKATHMLGAALLVPVSLVLLLLLVRSTFMVYAYSVAKHGRLLRVVSG ITGLLIPGLLVSVLPITLGGFVTVEDGVPVLHLGELFTSLTEYAHLGFGLSTELFMSALF LADYSREAGDEETYRDYRRLAIIWGPINLLMALLTVSTFSEHAPWMVEGFKRYAFWFGLS VAAFIAAYILLLKGRPDGRSGYPRASIITVIIQYGLASYAYFSAHMPYMVYPHLTFDEGI TNPTMFRSLFIGYIVSSAILVPVFYLFWRLFLKDKRYVQKE >gi|333604167|gb|AFDH01000112.1| GENE 24 30081 - 31451 1523 456 aa, chain - ## HITS:1 COG:BH0878 KEGG:ns NR:ns ## COG: BH0878 COG1271 # Protein_GI_number: 15613441 # Func_class: C Energy production and conversion # Function: Cytochrome bd-type quinol oxidase, subunit 1 # Organism: Bacillus halodurans # 1 435 1 435 443 535 63.0 1e-151 MDTVVMARALFGTSMAFHIIFATLGVGLPMMIVFAEIMYHVKKDRDYVVLARRWTKASGI LLGVAIPSGTIVGVMLSLLWPGFMRIVGQVIALPFQIEMWAFFFEALFMSIYLYAADRLP PIARIISVIFVAIGASASAVMITDAHAFMNTPRGFSINANGDFVDIRPWEAVFNPSLWST ALHVLSTAYMTGAFAVASVAAYKLLKARKAPREADYHRKGLFLALIFGGIMTAFTAVNGH ATAQMLHHHIPEKLAAAEGLFETQSHAPLAIFGKVDEATQSIKGAIELPGFLSLLAGNRF DTVVRGLNEFPRENWPPLYIHTLFNLMVFIGMFLLALAFLGLLIRIWFKKPYPRWLLTVL VASGPLSMLGIEIGWIFSCTGRQPWTVYHVQRTSEAALQSQGIGTLFVMFVSVYVFLLVV TSIVMHVYFKRHPVSEALGLAAANGDQTRAAEGAST >gi|333604167|gb|AFDH01000112.1| GENE 25 31650 - 32375 267 241 aa, chain - ## HITS:1 COG:no KEGG:DSY2645 NR:ns ## KEGG: DSY2645 # Name: not_defined # Def: hypothetical protein # Organism: D.hafniense # Pathway: not_defined # 1 226 1 225 229 130 35.0 6e-29 MKKTIMVSALTGLLLGLGYIHLFSPPTSASLPTKTYINLSDMRKEIDRLTKEDPTLGLSS NPYVFIKNNKEYERIVKMGYPALPVIEERIMEGNSFGLDKYILAAAAEEIARVDLKKSEF KWSDPEEFTRSWQLHLKAVPGKVEKIVNSKESAEWKNEKLTELGAPAIPFILEKVEKGAK ELETSLQKIVNSSDLPSISPSDFNAQQWKTDHKEDARLLKTMVDKAAEQDVSTQFRMNPN K >gi|333604167|gb|AFDH01000112.1| GENE 26 32387 - 32890 28 167 aa, chain - ## HITS:1 COG:no KEGG:DSY2646 NR:ns ## KEGG: DSY2646 # Name: not_defined # Def: hypothetical protein # Organism: D.hafniense # Pathway: not_defined # 13 166 19 163 164 63 32.0 3e-09 MKKVKLAIVFFTVMIVAFGSTVFAVTNHSDAWFREHLRSGVSYSADFNSGTDGNHLFPYN CLAYAIDETTKWVWPWKSSGYDRDATAAEMTSFLRSYGYSDRNTGNPNNPPKLIAYGKSL SSVGHIARVLDSSTTKSKWGIAELVTTYSLSPYNSSAGYGPAVQYYY >gi|333604167|gb|AFDH01000112.1| GENE 27 32915 - 33334 196 139 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MPVKKIYWERGYNRSYSKNDQVTSVGVGKNTLEDDLLSTAGGENILPWVDNQSPDSIPIT LEQLRKADPDLILYQNYFRSPEYVPLKEREEWQSLRAIRTSQLYAYPFDEMRYSELSENL MTLLKAIHPEAISRITENK >gi|333604167|gb|AFDH01000112.1| GENE 28 34154 - 34414 340 86 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTERDSSLQSQNPISQAQNSLEKVHNAVSQALSHPTAKLEEQANQAIRHAERAVEDASLS FNQPAFEEVENGLRQEIEDLHNGTRS >gi|333604167|gb|AFDH01000112.1| GENE 29 34505 - 35872 1334 455 aa, chain - ## HITS:1 COG:NMB1707 KEGG:ns NR:ns ## COG: NMB1707 COG0733 # Protein_GI_number: 15677555 # Func_class: R General function prediction only # Function: Na+-dependent transporters of the SNF family # Organism: Neisseria meningitidis MC58 # 24 454 9 445 445 314 42.0 2e-85 MSKQDLNGGTSGPAAGEKGGERFSSLGFIMSAIGSAIGLGNLWKFPYITGIYGGAAFVLL FIICLVIVGMPVLLAEMAIGRAGRGNASTSFLNLSGSKRWSFFGFLGVFGSFMITSFYSV IAGWTLHYALSSFTGALYKGTDYAVQFQTFTSGYSPIAWQFLILALSGWVIARGVSGGIE KFNKVLIPALAVVLLILMARALTLPGAGAGIEFFLKPDFSKLTGESALVALGQAFFSMSV GMGVMITYGSYVQKEQSLGKATVAVTGGNLLYALIAGLIVFPTTFSFGLEPAQGPGLVFV VLPAAFSSMPLGAAFGGLFFILLAIAAFTSILSLLEVPVAFAMDRWKWTRLKATSWTTAV CFIVGVPSALSVGGVLSDFKIGGKTVFDSLDFVTSNILLPIGGLVVTLFIAYASKRAMEE AGLKGTLLRVWVFLLRIVIPPLIVLIFLYSVGIIS >gi|333604167|gb|AFDH01000112.1| GENE 30 36066 - 36947 1077 293 aa, chain - ## HITS:1 COG:BS_yusV KEGG:ns NR:ns ## COG: BS_yusV COG1120 # Protein_GI_number: 16080346 # Func_class: P Inorganic ion transport and metabolism; H Coenzyme transport and metabolism # Function: ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components # Organism: Bacillus subtilis # 1 261 3 263 275 395 70.0 1e-110 MYGIETKSLTLSYNQTDIIEDLDLEIPKGQITVLIGCNGCGKSTLLRSMARLMKPKNGAV LLNGQEIAKQSTKEVARQMAILPQGPTAPEGMTVFELVKQGRYPHQNWLKQWTREDEAAV TKALEATGMAPLAERQVDSLSGGQRQRAWIAMTLAQGTNTILLDEPTTYLDMTHQIEILD LLWELNEKENTTIVMVLHDLNLACRYAHHIVAICDKKVYAAGKPEEIVTEELVRHVFGLN CRLVRDPIFGTPTCVPFGKGRRLPGCEEMVNFVNAKSVSSPDSPLSEPAPLPV >gi|333604167|gb|AFDH01000112.1| GENE 31 37129 - 38184 1121 351 aa, chain - ## HITS:1 COG:BS_yfhA KEGG:ns NR:ns ## COG: BS_yfhA COG0609 # Protein_GI_number: 16077913 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-siderophore transport system, permease component # Organism: Bacillus subtilis # 19 351 11 343 343 277 51.0 2e-74 MSRYKHIRLKWPSISFVLDKRALLVTAVLAVLLFLLMLVSTGTGEIKISPLQVLRTLLGM GTPQDALVIHTFRLPRVLVAVMVGAALAMAGAILQGVSRNPLASPDIIGITDGAGVFVVA FIVITTGTSSTFLSQAQWLPLAAFVGASLTALVIMALAWKNGLPPVRLVLIGIGIAASLS AVNTMLILLAPPVLTTQAVTWKVGSVYGSNWSHVGALALWLAVLIPILAYMARSLNVQAL GDSVATSVGSRVNRQRVVLILLSTALAGSAVAFGGGITFVGLIAPHMARRLVGSAYGALL PASGLFGALVVLVSDYIGRTAFPPHDYPAGIFTACVGAPYFIYLLYKSRNT >gi|333604167|gb|AFDH01000112.1| GENE 32 38181 - 39188 1209 335 aa, chain - ## HITS:1 COG:BS_yfiZ KEGG:ns NR:ns ## COG: BS_yfiZ COG0609 # Protein_GI_number: 16077912 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-siderophore transport system, permease component # Organism: Bacillus subtilis # 1 332 1 332 333 325 57.0 8e-89 MPLRSNTFKTIGLLTGVALLILAMGCSIVYGYTGTNWHTAWDAYRAFNGSNEHLIIREAR MPRALIAAAVGSSLAIAGVLMQALTKNPLASPGLLGINAGAGLLIVIAMSLLSVSSLSTL AWIAFLGAAIASAVVYMLGSVGRGGLTPMKLTLAGAAVAALANSLTQGVLLSNETRIQDV LYWLAGSVEGRKLDILLPVLPYLGAAWLVALLLSSQINVLMMGEDVAVGLGQRTVYIKLI AAVVVVFLAGGSVAVAGPIGFVGIIVPHLVRSLVGFDHRWVIPYAGICGALLLVAADTLS RFIIMPQEVPVGVMTAFIGTPFFVYIARRGFKTSS >gi|333604167|gb|AFDH01000112.1| GENE 33 39414 - 40301 1080 295 aa, chain - ## HITS:1 COG:BS_ydhR KEGG:ns NR:ns ## COG: BS_ydhR COG1940 # Protein_GI_number: 16077653 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulator/sugar kinase # Organism: Bacillus subtilis # 4 293 2 291 299 355 57.0 4e-98 MRTLGAIEAGGTKFVCAIGSEDGTVLERVSFPTTTPEETMGSVLSFFEGKGIEALGVGSF GPVDPNKKSPTYGYITTTPKPHWGNYNILGELKKHFNVPMEFDTDVNGAALGEATWGAAK GLESCLYITVGTGIGAGAVVGGKLVHGLTHPEMGHIFVRRNAEDTYEGKCPYHKDCLEGL AAGPAIEARWGVKGTELGTAHKAWELEADYLAQALMSYILILSPEKIIMGGGVMKQQQLF PLIHARLQELLNGYVQKEEVAAGIADYVVYPQLGDNAGICGALALAARALGSEIR >gi|333604167|gb|AFDH01000112.1| GENE 34 40436 - 42928 2607 830 aa, chain - ## HITS:1 COG:RSp1552 KEGG:ns NR:ns ## COG: RSp1552 COG0265 # Protein_GI_number: 17549771 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain # Organism: Ralstonia solanacearum # 76 404 122 451 490 182 35.0 2e-45 MLNRNTFRLCGIVLAIMLAAASGFGFGTPVRAAVDSDELPQIIARTSPSVVAIIGKPTGG KTDKGTDKDRYDLAHGTGVIIKSNGVIVTNAHVVKSMSNLVIVTSDGKSHTGKVTNLDEQ SDLALVKIEATGLQTASFADPKSLRVGETVVAIGTPVSFALRNSVTVGIVSGIDRSVNDQ YRLIQTDAAINPGNSGGALVNMKGEVVGINTLKYSEYGVDNLGFAIPVDTVDYVLKHFEA YGKVKRPFLGLKLEESWEAAVGLPSDDGLTVSHVEPGSPAEKAGIAEGDTLVSIGDKAVD TTVQYNEVLKQYLPGQSVKLTVQAGGKTVTREVALGEEKSEDARQTDNTDNTGLNTDRGK TKIGDSNQNWSMKYPSGLIKQFQSADGTMVRFADAKGDFTLSVSVEDQGDELSPAMLLKT AAELKMGTILEKQYVKNGAQPYAKVTGKLGGMVYQIRLYQDHDKLYSLALTYSQSKENGT KAGPNSYADLLDSFRTVFDRQDAKLKDIAKTKSGSGDEVSNEYGLTFALPDKWNESPYRT DVQYSNDTMSQGISIEVTSQTTGDTLDAWVKRDKTDFEETFAASYRETSEVKKGTLDGTE SREVTFSATMGDKWDSIHQVYLVKEGYKYKFSIHYPKDLKADETDKLLGTVISSIRLDVK KMDAGVGFIQDEQEILDKNRTIRYADEDYGYTVKIPETWTREYAEDYDDPDFEKGGASFY TFTGGYFAVDAEEGTDWQEKAAEINAGHEKSAEADADYKVKAEDVSLLGTTVRKFTVHYS VKKVGYEETEYVLSRNGKVYVITTRLNDAVHTEANAERLNKAVRSMVFGK >gi|333604167|gb|AFDH01000112.1| GENE 35 43128 - 43493 354 121 aa, chain + ## HITS:1 COG:no KEGG:BBR47_21590 NR:ns ## KEGG: BBR47_21590 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 4 121 3 94 113 75 45.0 5e-13 MNTYVVQPGDTLYLIANRYNTTVEALLRANNLSTPYVYVGQTLYIPAPGPGPGPGPWPGP GPGPAPGPGPGPGFGNLEQRVNRLEREFNQLNREVGRLTREVNRLDQRLDRLEQRVTRLE R >gi|333604167|gb|AFDH01000112.1| GENE 36 43559 - 47767 3560 1402 aa, chain - ## HITS:1 COG:all7128_2 KEGG:ns NR:ns ## COG: all7128_2 COG2931 # Protein_GI_number: 17233144 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: RTX toxins and related Ca2+-binding proteins # Organism: Nostoc sp. PCC 7120 # 672 1209 1401 1997 2231 62 25.0 7e-09 MAGALAASAGTAGGSPVSATPATQKAGFADLSGITGNPLQNIQRAVELGLFDGAAEAFRP KDPLTRVEMAVLLTHALELPLDASSSSFKDVSASSWGSPYIEAIRKAGIVQGDGEGNYRP QVPVTRQEMAAMLMRAAELSSEGGSESVLPRDWDRTAPWAKSYVRASLEQGSMKLAGGSF LPTGSVSRGEAAEMLLATFFSVEHDMILQEIRDSRHIKLNGVVYELSEETAALFTEKNKA VLAKAKLKFHANGRKIDAITSLELRASGSPAGDGEEEFSRNLVLEGNGAVLPGDLIVSNN YLSVTGLQVNGDLTVAKGLENDFYASGIKVKGQTRVAGGDDNTVVFENSELNGLTILKEN VRIVASGKTVVQQMDIRSSAQVEVGAEARVPDITLSDGSAKVDLQGSLQQVTVQSSQPAQ ITGSASIRQLNVTGSASVSIDGTGTIDQLQVTNATSQVVIGSSSQVAAVSLGQGVPASAV TRSSAPAGGTGGSSSGPSNGAPVQVTPFPEYIFMERGTGASIDLSAFFTDPDGDTLKISA ISSSNRVVSVSTSGYTATLTPAASGTATIKVSVDDQHGNKISGSVKVTVYALPVAQPIPD QLVQLNGGAGTVRLSDYFSDKALRNLTYSASSADPAIADVSVNGDGLSLTPLRSGHTSVK VTAQNDIVANDGSRGETSVTFELTVNTAPAASQNPADVYLAPGAADSSLDLSQLFTDADG DALTYEAESGDPSVATASVQSGLLTIQANQPGTAVIRLRAKDGKGGEGTADLTVHVSPFN QSPVVSRQPADRLLAVGQTDTALDLAQVFTDPDQDALVYEYTVSDPSVVGAVRQGNSLLL TALQGGQAVIKLTAKDGKGGEVSASFTVSVNRAPAAVRNPDDVYLVAGRADGELDLSQLF TDADQDPLTYEVLSSVPGTASWEVAGQKLKLHALQVGTSAFRVTAKDGRGGEAAVTFTVN VRMPNMLGTIPDQTVELGTPKLLDLTALLAGFDAAATVTANTYDTSIATILLADRKLTMT PISEGTATVTLSVYHPVEGDQSTQFAIRVVQHLNSAPTVVKNIPDQLLTPGVTNVRTFDL ASYFADADGDALSYTVSGFSPAVVSAAVSGNILTLNPGTGSADGQVTVTADDGKGGTAEF RINVRTAQLVNNEIVTVRTKQGIKDPLTYDLAELFPGETSFRLYKGTADAIISGPTVLNG KTLALANETSYLWVIGAQGKAAVFQVVTEAQGAPQIFFSEYLDGGDGRIAFELYYSGDMD PGKKPTGYTVEAHQYMKKTGKMNVISKALLDQGPGKPLIVPYIFIDSIFYDFFDKTTAVY YNEDGIRFYNPAEWNTVALVLKKDGQVVDVLGDPSSTAQFLPNGGTLIRKSGVSTGSKQF SIYGEWNVHPKGSYQFMGSHTP >gi|333604167|gb|AFDH01000112.1| GENE 37 48037 - 48888 902 283 aa, chain - ## HITS:1 COG:BS_yunF KEGG:ns NR:ns ## COG: BS_yunF COG1801 # Protein_GI_number: 16080292 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 1 283 3 284 284 366 60.0 1e-101 MIRIGLAGWGDHDDLYTTPADKKEKLRVYSSHFPVVELDSSFYAVQPLRNTRKWVKETPP GFGFVVKAYQGMTGHLRGKNPFESTEQMFRAFAESIEPMREAGKLTAVLMQYPPWFDCTR ENVDALREAKSLLDGLPLAVEFRHRSWYAPEVRERTLGFLEQEGWIHTVCDEPQVGSGSV PIVLRAANPDLTLVRFHGRNDGGWVGAPPGKSWRDVRYLYRYSRAELLEWKERLKVLERS SREVAVIFNNNSGGDAAANAKEMMELLGIEDEQGLAPRQLDLF >gi|333604167|gb|AFDH01000112.1| GENE 38 49123 - 49341 142 72 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSHHHHHHHNHCLCPEKQVFDPPTRVYRDFYHPQIVEVVHPIEIVNRHHCVPVPKHVHCY TVRDEFCPSPIR >gi|333604167|gb|AFDH01000112.1| GENE 39 49564 - 50844 1515 426 aa, chain - ## HITS:1 COG:CAC1096 KEGG:ns NR:ns ## COG: CAC1096 COG2733 # Protein_GI_number: 15894381 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Clostridium acetobutylicum # 15 417 4 405 425 120 24.0 5e-27 MQELQSREKKPKETKHIATVSLGVMGAGFLATLPFAPHTAGAFLQSGFEAGLVGGLADWF AVTALFRHPLGIKIPHTALLPNNRAQMTKAVVSAVEDNLLGKESIALRIGQMRLVETMLV KAEEALRSEGAREAVRSACRYALERLPAEQIAAFASQQIRQAAGKMDPAAAVGLAVDQVL SHGYEEPAIDFLIDRAERWAVRAETRRLLGEIAEGVIQGIEMNGLMAFAKNAFLGFLSGD KLGGMLQHALLDNLAALRLPGHRNRAGLLDIVRRELAGLKDNERLHEAVGNLARQLPDRL RLEERLTAMIESWRDRLLEQLQEGPLLDETVMPLLEEGVRRLRSDEDTVRKLEEWLKAQI TEFVERNHSKIGALVRENIDKMDNATLIEFIENKVGKDLQWIRVNGAVCGFIIGLALEGV RMLFGH >gi|333604167|gb|AFDH01000112.1| GENE 40 51059 - 51745 790 228 aa, chain - ## HITS:1 COG:BH3178 KEGG:ns NR:ns ## COG: BH3178 COG2220 # Protein_GI_number: 15615740 # Func_class: R General function prediction only # Function: Predicted Zn-dependent hydrolases of the beta-lactamase fold # Organism: Bacillus halodurans # 1 228 1 226 226 229 50.0 2e-60 MQITYHGHSCFLVENEGYRVLLDPFLSGNALAVADPGEIQVNAILLTHGHSDHIVDAEEI ARKNDCVIIANFEIASYFASKGLKTFAMNIGGSAKFEWGTVKYTLAFHSSSIEVEPGKFV DGGQPGGILLTMGGKTFYHAGDTALFGDMKLYGEMYNIDVAALPIGDVFTMGPDEAVLAA TWLRAKKYIPTHYNTFDVIKQDASEWIQKLKQAYQEGVRLAPGETLDV >gi|333604167|gb|AFDH01000112.1| GENE 41 51835 - 52032 154 65 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MRPANRPFNGSVPSGTPVQTGFFGSLSLLNPKLEGEYNYSGMQKALLHGQAAVIAKHLSA SKGFI >gi|333604167|gb|AFDH01000112.1| GENE 42 52063 - 53523 1424 486 aa, chain - ## HITS:1 COG:lin2251 KEGG:ns NR:ns ## COG: lin2251 COG2855 # Protein_GI_number: 16801315 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 146 486 14 335 335 273 50.0 7e-73 MKTFTQRLGTPALRETGKAKTDASENRSLINKRLSTVSQDRTASPVIEEETRPEETHPAV PARKADTLAASDFAAGRAAGTSGSGEAGSAPAIPAAASGSAVSGSSASASAAEASAEAAA EAVRAVSAAVQPGPGLGKAAARLATGLGMTLALALAAKALALIPGLNVIGQLVLALLLGI AWRAAAPVPASAPAGLAFASKKLLRAGIILLGMRLSLLDVVHAGPAVFAAAAGNILFATV VVYAIARRMNVGPRLAMLSACGTGICGAAAIAGISPQIKADDDETAVGVTVIALLGTLFT VAYTLVYPLLGFSSAEYGFFSGATLHEIAHVIAAAAPGGSAAVDSALVAKLTRVALLAPV ALALGVWAARRERRGAGEGAAAVSAASGAAGSAAPRKAGVPVPWFIVGFLAAAALNTIGI VPQPAAAAAVQGAYLLIAMAMAGLGLNVNLAVFRRHGLRASAAVLLGSVLLSLLGIAEVY VLRLLG >gi|333604167|gb|AFDH01000112.1| GENE 43 53787 - 54698 846 303 aa, chain + ## HITS:1 COG:BS_ywfK KEGG:ns NR:ns ## COG: BS_ywfK COG0583 # Protein_GI_number: 16080817 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus subtilis # 1 294 1 295 299 255 47.0 7e-68 MIVDHLRVFAAVAEQRHFSRAAEALNISQPGVSQHIRNLEQEFGAKLMIRSPKQVKLTEA GELLYARAKKILRLYEEARQEINALQHVVTGSLKIGASFTIGEYILPRLLADYAKHYPKV DIQSTIANTVEVVQGVRRDHFHIGLIEGIADAPDVEIEPFMEDEMILIAPRDHPLTREPF KLQSLQNQTWVWREPGSGTRDYSDRLIAEWQLNVKRSFMFSSSQSVKEAVSAGLGIALLS RWIVRKELESGEIVHLGAGGRRLTRTLTMVRRAAGENSKALEVFVQKVRGAHEAMQVPGP SAP >gi|333604167|gb|AFDH01000112.1| GENE 44 54920 - 56503 1437 527 aa, chain + ## HITS:1 COG:no KEGG:PPE_04483 NR:ns ## KEGG: PPE_04483 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 14 527 6 498 498 501 51.0 1e-140 MEPLKRTERKLLPPVRSSEDTRKQTEKSWLSSNWLKSGILLLVFFIWAGIVAAVHTHKAL PPGLSFEGKAYRAESVDFLYDLSYKKDGGYHQEQMIFDRVNQAIAEAKEFIVVDMFLYSG YYDNDQSFPPLSGQLTESLLDARRRHPAMPITVVSDEVNTTYGSHPSPELERLKAAGIGV VLTDTDPLRDSVPLYSAVWRMGFQWFGQSGKGWLPNPLADSAPKVTLRSYLKLFNVKANH RKVVATENTALVLSANPHDASFNNSNIGFQITGSKDFISEVVGTEQAASVMSGGPAQLQP KAADKQGEPARPEAASGNGTPEPAASSKDAVTVRLLTEGKIYSRLLDSISAAPKGSEIRM GMFYLADRKVIDALLDASARGVSIQLLLDPNQNAFGHSKTGIPNRPVAAELRKKTGGKIA VKWYNTAQEQFHTKLIDIRHPDGNAVINGGSANFTPRNLDDLNLETNVEITAPAGSKITR DLDRYWDRLWNNRDAEYSLEYPAYEDKLVGFKRIVYHLQDMLGFTTY >gi|333604167|gb|AFDH01000112.1| GENE 45 56612 - 57670 1217 352 aa, chain + ## HITS:1 COG:yraQ KEGG:ns NR:ns ## COG: yraQ COG0701 # Protein_GI_number: 16131043 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Escherichia coli K12 # 8 345 5 340 346 340 56.0 2e-93 MNTSPIPASTKSRPRSAYWKPFIFIAILIGGLFYVKWEPYFHKALTAAAKHDIGKSILAG SAEPSLAAAWDYSVVYFKAVWKAAILGIILGSLLQVLIPQDWLKRVFGKRTFGSTVAGGL SAMPGMMCSCCAAPVAVGMRKQSGSIGSALAFWIGNPVLNPATIIFMGFVLGWKFAILRI AAGIVLVFGVSYWAERLVKKDDAVTDELPQTPAVQPQSGPVVVRWLKALWTMFWTVVPVY FIAVFILGAARAWLFPSLDPAIGNSLVALIGLALAGTLFVIPTAAEIPIAKTMMALGLGT GPAAALIMTLPAVSLPSLIMVRKAFPARVLWFTAGMVALTGIVTGVVGIFVL >gi|333604167|gb|AFDH01000112.1| GENE 46 58380 - 59147 803 255 aa, chain + ## HITS:1 COG:alr3943 KEGG:ns NR:ns ## COG: alr3943 COG0310 # Protein_GI_number: 17231435 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Co2+ transport system, permease component # Organism: Nostoc sp. PCC 7120 # 3 246 2 249 261 267 69.0 2e-71 MNIRKTLASFLLITGIVCFFLVNEPESAYAMHIMEGFLPPFWALFWWVVFLPFFILGVRA LIRITKETPELKLMLGLAGAFTFVLSALKIPSVTGSSSHPTGTGLGAILFGPLPMSVLGS VVLLFQALLLAHGGLTTLGANAFSMAVAGPFVGYAVYKLMIKSTGRQKLSVFTGAALADL TTYLVTSVQLAVAFPAADGGMLASFAKFAGIFAVTQIPLAISEGLLTVLVLGWLQAYTPH EISALQRNLKGADRS >gi|333604167|gb|AFDH01000112.1| GENE 47 59144 - 59431 435 95 aa, chain + ## HITS:1 COG:alr3944 KEGG:ns NR:ns ## COG: alr3944 COG1930 # Protein_GI_number: 17231436 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, periplasmic component # Organism: Nostoc sp. PCC 7120 # 9 94 11 99 100 95 59.0 2e-20 MKTWKKNVWILVVVVLLAVLPLIFVKGEFGGADGAAEEAIQEIAPTYEPWFASLMEPPAE TESMLFALQAALGAGFIGYVIGLYKGKASKPKPKA >gi|333604167|gb|AFDH01000112.1| GENE 48 59431 - 60237 526 268 aa, chain + ## HITS:1 COG:alr3945 KEGG:ns NR:ns ## COG: alr3945 COG0619 # Protein_GI_number: 17231437 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, permease component CbiQ and related transporters # Organism: Nostoc sp. PCC 7120 # 1 264 1 260 266 116 31.0 5e-26 MLKRIDTISYANAFRGISPVWKCGFAGCLFILSYAGAPPVQAAVFGWMTLWTLLYARVPG KLYWLVYGGSLLFFAASLPALLLEFGRNTGTGVPLSTGWIIGTAGPWTVYVTGESLSRTA GLFMRVSACLACLQFVLFTTPLLEILQVMKKIRVPQIVIELTLIMYRFIFLLADTAHAMR TAQRCRGGQNGFAGGLRDTALLIVHLFGRTMQRYRGLAYGLTSRGFTERIELAPYEAAPV PPRYKAEGVTGIFMLTAAQIWLKWRGFA >gi|333604167|gb|AFDH01000112.1| GENE 49 60234 - 61088 892 284 aa, chain + ## HITS:1 COG:alr3946 KEGG:ns NR:ns ## COG: alr3946 COG1122 # Protein_GI_number: 17231438 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, ATPase component # Organism: Nostoc sp. PCC 7120 # 4 258 5 259 274 247 47.0 2e-65 MNPIMELADVVYSYPGTGKKALAGLSLTIPSGRNIALCGHNGSGKSTFFLHAVGIHRPQS GTVHWKGAPVSYKRQDLQELRRQIGLVFQDPEQQLILGTPYEDVSYGLRNAGVSEPEIRA RTEAVLERMGLEQLAHTPIHHLSLGQKKRVTLAGVLVLEPSLLLLDEPTAYLDRASERLL LDELADIRQSGVTVVMATHDMDLAYTWADEVLVMDQGACLLQGTPGRVFAETDTIERIGL ELPMLLRLWRSLPRALREGIDPPRSADAFGELLAARLQAAAAKS >gi|333604167|gb|AFDH01000112.1| GENE 50 61232 - 62914 1896 560 aa, chain - ## HITS:1 COG:PA1794 KEGG:ns NR:ns ## COG: PA1794 COG0008 # Protein_GI_number: 15596991 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glutamyl- and glutaminyl-tRNA synthetases # Organism: Pseudomonas aeruginosa # 10 555 7 553 556 647 57.0 0 MENKSVTTNTTNTNFIKNIVIEDLNEGRVDTVVTRFPPEPNGYLHIGHAKSICLNFELAD EFNGKTNLRFDDTNPAKEDEEFVRAIKEDVQWLGFEWDGLFFASDYFDFMYEKAQFLIRK GKAYVCQLNADQIREGRGTLTEPGKESPYRDRPAEESLDLFERMRKGEFKDGEMVLRAKI NMASPNINLRDPVIYRISHAHHHRTGDAWCIYPMYAFAHPLEDAYEAVTHSICTLEFEDQ RPLYDWVIQECETEHVPHQYEFAKLKLTDTIMGKRYLKQMVDEGVVDGWDDPRMPTVSGL RRRGFTPESIRNFCREIGVTKSDSTVDVKYLDHFIREDLKLKAPRTMGILKPLKVVITNY PEGQVEMLDAEINSENLEMGVRQIPFSREIYIEQDDFMENPPSKYFRLFPGNEVRLKHAY FIKCEEAVKDEAGNVIELRCTYDPETKSGSGFTGRKVKGTIHWVEASRAVPAEFRLYEPL VLPEQEEKEEGSTFLDRINPNSLEVLSGFVEENMKDAEGNDKFQFFRHGYFNVDPKASTK DHLVFNLTVSLKSSFDIKQA >gi|333604167|gb|AFDH01000112.1| GENE 51 63309 - 66536 2953 1075 aa, chain - ## HITS:1 COG:BH1491 KEGG:ns NR:ns ## COG: BH1491 COG1404 # Protein_GI_number: 15614054 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Subtilisin-like serine proteases # Organism: Bacillus halodurans # 98 490 265 588 588 197 36.0 7e-50 MRKISLLVLAALLALSLSVPAFGAEPSLSLKKNGSTPRYERPQALKDALPGQVIVKYKEK ADTMSMQGLMGPEKKADLPDPPSSKYKQRVGSKGLVTMEFPKSEPVSDVLEELENDPDVD FVEPVYPVWAAETKAAVRNGRAGQGAAARSTTGAASATDSPAKAASLPNDPYVEQQWWYR AIQSDLADTGTADAKLSGVVIAVVDTGVDSSHDDLKGSLVDGYNFVSNTPDTRDDNGHGT NVAGIAAARKDNGVGIAGVASGAKIMPVKVLDSEGYGRTDVITEGIYWAVDHGADVVNLS LTSASSSRVMEEAVQYALQRGVIVVSAAGNESNHWTGNDTGELDQVKGSEDPLAHRFVKD VAFPAKLPGVLAVGAVDWYPQTEFIVADFSNSGSSLSVVAPGVDIYSTNKGNGYTGRNGT SMAAPMVSGLAALILAGDAGLDDLSTSERVERVGRIISETAKDLGPSGFDDEYGSGLIDV KKAMETPRVNIQAANGSTNLTGTGELQADIRLLDKDGSLAENASGAGKADLFAYTPNGTE PQFVKTLTFQASQGKASLTYKPDKAGKYLLVAYNDEKSPLWVSGELTFQMKPQAPQASLR SGSYTGTQKVTLTASDPGAKIYYTLTGAVPTVQSAVYTGPIEISRTQTLRVISAAGGAVS EIQTYRYEIAASGGNTGGGDGTGQPSEETVTPVKADSTVIQEKGYAMLDVKVTDENLQPL LKNPDVSLIGVQAVSSGKNNTAGAKVHLPASFFGGGQPKGLLITTSEGTLRLDPGSLQVD GSEEAVISLRRTHATESLTSAYPEGASPMSSILEIKIMAGSRTIGNLQKPATVTLTHAAA SDLGVDPEKMGAFVYSEDDSEWKYVKGAQNEGSMTFAVDGSSYAAVFAVDRTFADMSTHW AKRPVEVLAARQIVDGMDASRFVPQAGVTRAQFAAMLARLLQLPAAADGKQQFRDVAKGA WYADVVARSYSAGLVSGVTDDRFMPDEPITREQMAAMLVRAFAYGSGIAPDELPVPKTAS FADEGTAGTWAVPYMRKAAGLGLIDGYEDGTFKPLNGATRAESASVIYKLSASEY >gi|333604167|gb|AFDH01000112.1| GENE 52 66928 - 68496 559 522 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|153833204|ref|ZP_01985871.1| ribosomal protein S15 [Vibrio harveyi HY01] # 1 496 7 502 512 219 32 8e-56 MRIVSGEDMYEIDRHTVNLIGISADTLMESAGRAAASLLLERIPPEAEVVVLSGAGSNGG DGIVLARVLKAHGRRVSLWLIPPRDKIGGAAAAALSVYEKSGYAAADYIGSEAELERRLE RADAIVDALLGIGVKGSLREPYRNLIGKINGQRAAVYAIDLPSGVPADGGAVEAAVRADV TVTIQYPKLGTFTHPAASYCGELLVADIGIPPAAASGLPRRSLWTLPDVRRTLPRREASS HKGTHGRLLVAGGSLRMPGAVVLASRAALRSGAGLVTAAVPDCIHAIAAGHYPEAMYLPS PSEDGHFRGELPLEGASFGAIAAGPGLGRTPGGRAVVEQVLRQDVPVLLDADALFHAAEL LPLLRKRRKPTVLTPHPGEMARLTGSTAAAVEDDRFGVSARFAAESGAYVVLKGPHTIVA APDGTQHVNTTGSAALAKGGSGDVLTGIAAAFLLQHEDVLQAVSNAVYIHGLAASLLTEE RHSLADVLASDVIESIPAAFRHIYGDEGGAEGKARKPDGRFF >gi|333604167|gb|AFDH01000112.1| GENE 53 68743 - 69750 714 335 aa, chain + ## HITS:1 COG:CAC2451_2 KEGG:ns NR:ns ## COG: CAC2451_2 COG0500 # Protein_GI_number: 15895716 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Clostridium acetobutylicum # 132 281 1 152 216 96 32.0 6e-20 MHIKEAAKRLGISARAIRFYEEKGLIAPGKELSSGYRSFTEQEIWRLRTIVALRESGMSV SGIQAALEQVERGEHDELLHYLELQRSVLYARLLETRQTLQTTDHMIGLLQGSRGLPLED FYRLAQDSREVRELRNWEDRWNFDELASSHDERVWSGDSAYPGYREALERTVEEINPAPG ETGLDLGTGTGNLAGLFMERGAVMNGVDQSKEMLRICRSKFPGMTAKIGNFLAVPYTDGQ FDFVVTSFAFHHLSGRQQKLALNEMARVLKPQGRIAIAGFINRNADGGAPTDKHRSDSPA GVLDFLDWFGPNGFESKCLRLSPELYLAAARRRLP >gi|333604167|gb|AFDH01000112.1| GENE 54 70196 - 70894 712 232 aa, chain + ## HITS:1 COG:STM0259 KEGG:ns NR:ns ## COG: STM0259 COG0500 # Protein_GI_number: 16763642 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Salmonella typhimurium LT2 # 25 158 33 157 256 71 34.0 1e-12 MPDHTDIYRNQTHLYDRMISRQPGLAERIDRIRPHEGLDIVDLGAGTGRLTAVLAPKAAS VTALDASSGMLEVTASKLRQAGLTNWRCTAADHRSLPLEDGSADLLVCGWSLCYLAGPDV PGWEANVAQALAEMRRVLRPGGTLILLETMGTGTEVPDPPAFLKPYYALLTQKYGFAHET FRLDYTFESLKEAEETARFFFGEDLAAKTTRNNWVTLPECAGVWWLHMPAGA >gi|333604167|gb|AFDH01000112.1| GENE 55 71252 - 72691 1438 479 aa, chain - ## HITS:1 COG:BH1470 KEGG:ns NR:ns ## COG: BH1470 COG2509 # Protein_GI_number: 15614033 # Func_class: R General function prediction only # Function: Uncharacterized FAD-dependent dehydrogenases # Organism: Bacillus halodurans # 1 476 1 477 480 747 75.0 0 MSNRYDVIIVGAGPAGIFAAYEFSLKSPHLKVLLVDKGHDIDSRRCPILEEKIKLCPPAA GRKEFAGCLPACSITAGFGGAGAYSDGKFNITTEFGGWLTDYLPPSRVLDLIRYVDDINL KHGAQQTLTDPLTDVVSSIENRAYAAGLKLLRAQVRHLGTEQNLEILRSINTYLKTKVDM RFKTEVADLLTSKTADGHKIRGIVLNSGEEIEADSVIVAPGRDGSAWLTSVLRKRRLKMY NNQVDVGVRVETSDVVMQEINKHLYEGKFIFNTSVGTRVRTFCSNPSGHVVVENHSGVMA ANGHAYKDPALGSRNTNFALLVSHQFTEPFDKPNEYAREICKRANDLSNGGVIVQKYGDI IRGRRSTEGRIKEGFLEPTLKEAVPGDLGLVLPYNTMKSLVEMVEALEKVTPGIASEHTL FYGVEAKFYSARPKLTEQLETEIAGLYCGGDGAGVTRGLAQAGAAGVWIARAVAERAQG >gi|333604167|gb|AFDH01000112.1| GENE 56 73015 - 73641 622 208 aa, chain - ## HITS:1 COG:BS_yisU KEGG:ns NR:ns ## COG: BS_yisU COG1279 # Protein_GI_number: 16078150 # Func_class: R General function prediction only # Function: Lysine efflux permease # Organism: Bacillus subtilis # 6 208 20 217 220 198 57.0 7e-51 MLTAAAALHGLILAMGLILPLGVQNVFIFNQGALHKTYTRALPAVLTASFCDTLLIGLAV FGVSVLVLKIWWIKTALMTAGVIFLAYMGWTTWKGASRKDADEPATGDETRYPARKQIAF AASVSLLNPHAILDTVGVIGTSSLQYTGTHKWVFALACILVSWLWFFGLAALGWLTGRIS GSARFTAVLGKVSAIVMWLSAGYIAFSF >gi|333604167|gb|AFDH01000112.1| GENE 57 73839 - 75290 1393 483 aa, chain + ## HITS:1 COG:BS_ydfD KEGG:ns NR:ns ## COG: BS_ydfD COG1167 # Protein_GI_number: 16077604 # Func_class: K Transcription; E Amino acid transport and metabolism # Function: Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs # Organism: Bacillus subtilis # 10 482 8 480 482 526 55.0 1e-149 MQDSSWKPDKASSIPLSVQIKQYIKSKIENGEWPVGTKIPPQRAMAAVFKVNRSTVVAAV DELIADGILEGRSGSGTRVVNNSWTLLTPSAAPDWTSYVQSGVHRPNRAMIQEINRAEFT PGMIRLGTGELSPALHPHEMTRKVLERLPGRMTSLGYEEPKGLLPLRERISAYLSTSGIH ASPSSIMIVSGALQALQLISLGLAQPGSTLLLEKPSYLFSLHMFQSAGVRLCGLPMDERG VVTGRIPELAKRAKGAMLYTIPSFHNPTGILMPEDRRKELLEVCETAQLPVIEDDVYREL WLDEPPPPPLKAMDKNGLVLHLGSLSKTWSPGLRIGWVVGPEAVIDRLADLKMQTDYGSS SLSQWAAAELLSGGLYLRHLETVRAEMRRRRDRTLELLDSGFKDIASWKVPSGGFYIWLK LTRSLSMRELFEKGLQAGILLNPGSLYDPLPGPYLRLSYSYASLEDLEKGLQRLSALIRR LAR >gi|333604167|gb|AFDH01000112.1| GENE 58 75402 - 76031 520 209 aa, chain + ## HITS:1 COG:no KEGG:BBR47_55730 NR:ns ## KEGG: BBR47_55730 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 4 207 3 205 205 207 50.0 2e-52 MTSLFQLPVQVETETVTSPGVTIYTPRLSGLQSPAVQKKLNAAFSGLTASLVNEQNKYQT GTLREMTGHYEVKTNQRGLLSLIATNYAYSAPMAHGYTVAESLTCDVNSGNFFTLSQLFK SGSGYVELLSQHVRVQLQRRKLPLLNPPFKSVWPDQNFYLADKALVVYFDLLEITPYYVG FPMFPISVYDLLPIAAERGPLDILAVDVS >gi|333604167|gb|AFDH01000112.1| GENE 59 76240 - 76596 434 118 aa, chain + ## HITS:1 COG:slr2097 KEGG:ns NR:ns ## COG: slr2097 COG2346 # Protein_GI_number: 16330583 # Func_class: R General function prediction only # Function: Truncated hemoglobins # Organism: Synechocystis # 3 104 2 108 124 90 46.0 9e-19 METSLYEKLGGKDAIGKVVEEFYKRVIEDESVNHFFRDTDMAKQLRHQTAFISYALGGAP YTGRSMAAAHTGLNLQPEHFDSIVNHLGASLAHFGVTGDDIRQITEKVESLRGDILYK >gi|333604167|gb|AFDH01000112.1| GENE 60 76787 - 78103 1341 438 aa, chain + ## HITS:1 COG:VCA0308 KEGG:ns NR:ns ## COG: VCA0308 COG0232 # Protein_GI_number: 15601073 # Func_class: F Nucleotide transport and metabolism # Function: dGTP triphosphohydrolase # Organism: Vibrio cholerae # 1 432 20 396 402 176 31.0 8e-44 MDMRKYRLDEPALGTFSEERDEYERDYARLIQSPVFRRLQGKSQVFGAGTGDYYRTRLTH SIEVSQIAREVARRMRKQYAFCIGGEHPGLMIDPAVVECASLAHDLGHPPFGHKGEEVLN HLLGEEHGLSYEGNAQNFRILTFLEKRAGSDSGLDLTAAVLLAINKYPYSLEEPGRLKGV YGMEWEGIRQLRDMWNMPEGCPTLEAQLMDLCDDIAYSTHDIEDGIRAGKIQMNRSFFED DRLIGHLVQEIVNDQGNLEVGWEQVDIAAMVKQVLASYLEQWELIYAQCDREASRTRREM KARWVSSFAGKVGIIDDPDKGWKRVTFVREGRQDLDLLRTMEIIKKLAWVTLVKDFRVQR LQKRSEIIIRRLWDSFKVPDHGQLIIPPDWIENYERHRSVWSWPRLVADYISGMTDAYAE KVAAELYASKSGSIYEMD >gi|333604167|gb|AFDH01000112.1| GENE 61 78141 - 79184 789 347 aa, chain - ## HITS:1 COG:PA3258_1 KEGG:ns NR:ns ## COG: PA3258_1 COG2200 # Protein_GI_number: 15598454 # Func_class: T Signal transduction mechanisms # Function: FOG: EAL domain # Organism: Pseudomonas aeruginosa # 103 338 29 262 270 144 32.0 2e-34 MQNFCSKCFVGERGYTVYFGGSETSSFLDAYLPEYPADQWDKIDSRLYWMHESLFNAMLD YVTAHLEYANIRAVRADKHDPLQGLDKLKPVQFFKEERDAHWIDDVITNRSIRTFYQPIV SFDGVDSSIIGYELLSRGAGRDGGLIPPVQLFQAAKARDRLFALDRTCRLEAVRNAGGLD DGLIFINFLPTSIYNPVHCLKSTVEMVEKTGVNPESIVFEVVESEEINNMDHLRSILAFY KKHGFRYALDDVGTGFNSLQVLSELEPDVVKLALEFCRGVSKDKGKQRVARAVARMTQEL NSRALAEGIEDRDDLECLRDLGYEWFQGYYFGKPEPQPLRVLPSWPA >gi|333604167|gb|AFDH01000112.1| GENE 62 79317 - 80261 624 314 aa, chain - ## HITS:1 COG:no KEGG:Amet_3885 NR:ns ## KEGG: Amet_3885 # Name: not_defined # Def: hypothetical protein # Organism: A.metalliredigens # Pathway: not_defined # 67 311 59 304 305 301 56.0 2e-80 MSFLYSDKWRQSALLGLLVLSLGVSACESAGSGSSGPTAKQAGKVAGSEKSAAGQKAAKN AAIVTPEGVTLQERFKAPKGFERTAAEPGSFAAFLRGLKLKPDGSVVHLFDGREKNKPGV YEAVVDIPIGSRDLHQCADAVMLLRAQYLFDRKQYGKIHFNFVNGFKAEYSKWMNGYRIK MNGNQASWVKNAGADNSQEGFRKFMDVVFAYAGTLSLEKELVPVQKSEVKPGDVFIIGGS PGHAVIVVDTAVNKSTGETLFMLAQSYTPAQETQILANPANSAQSPWYTLKEGGGLKTPE WEFGENSLRRFQEN >gi|333604167|gb|AFDH01000112.1| GENE 63 80550 - 81905 1855 451 aa, chain + ## HITS:1 COG:VCA0088 KEGG:ns NR:ns ## COG: VCA0088 COG1301 # Protein_GI_number: 15600859 # Func_class: C Energy production and conversion # Function: Na+/H+-dicarboxylate symporters # Organism: Vibrio cholerae # 31 442 7 422 424 240 36.0 4e-63 MNNNLIKAFETNWISLVVSLVIIGFLYFLAKKRVSFGYRVLIGLGIGLIVGFIFNTYKID AKSVSTIGTIYVNLIKMMVIPLVVVLVINSIAGLSNLGQLRKIGLKTIGLFLATTGIAAL IGLLVALVFDPGSGIPQGTLKDFKPKEIPTFSQVILDLVPSNPFNEMATGKVVPVLVFAI FVAVAIVHIGSKKPDAVKPVKDLIASLAQVLHQVIKYVIRLTPYGVYALIAAMAAKYGVD TLKPLIMLILATYTALLLHFIITFGGLVTFVAKVNPFKFFRKAYPTIAVAFTTRSSYATL PVNLEVLTKRLRVSPRIASFVAPLGATINMNGCGGVWPAVVAIFVAGVYHIPLTVSDYIL IVLVSMISSVGVAGVPGPAAISTTVVLTALGLPLEGLGLTLAIDAIVDMGRTAVNATGTT VSTLIVANSEGEFDRASFDRDEEDELELNPA >gi|333604167|gb|AFDH01000112.1| GENE 64 82181 - 84325 2562 714 aa, chain + ## HITS:1 COG:MTH1858 KEGG:ns NR:ns ## COG: MTH1858 COG1511 # Protein_GI_number: 15679846 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Methanothermobacter thermautotrophicus # 1 712 1 630 631 336 29.0 8e-92 MRKIGSIYARDIRNIATNWVAAVIILGLVFLPSLYAWFNIEASWDPYGQTGGIAIAVANN DEGATLRGKQLNLGNEIVASLKKNEKIGWTFVDEKEAMKGVNHGEYYASIIIPADFSAKI ATVLTDDPQKADILYYVNEKINAVSPKITSKGATGVIDEVSRNFIKVANGTIFQIFNEIG VELQNELPTIEKVRTLVFKLETMFPELNQAVGVALEDVHKSNDIVKKAQDNLPIVTQLAK DGEAFTNKLGDFLGKGSEAVEALGPNIKQDLLLLQQTATATQELTGILKDANFDPAVAKA AIDRVSQRLTVAVDVTDRMIGLFEQLNKYTGGKVMPLVIDRLKSVKDRFQQQLTTVGKIR DAIDKGEKPAQELVDNLNRLSKEAAGFIGDILGRYDSEIQPQILQGIAKAKKTAQNAHTV LSEAVKSIPDLQKILGDAAKGLAVGDKELKEIQARLPEVETRIKDLADKIRAFEKEGNLT ELIDLLKNNFEKESEFFSEPVQLKENKLFPIPNYGSAMSPFFTTLSLWVGALLLVSLLTV DVHEPGYKSYQVFFGRYLTFGTLAVMQSLMVTLGDMFILKTYVVDKLWFVLFGMVLSAVF MLIVYTLVSVFGNVGKAMAIVLLVLQLAGSGGTFPIQVTPPFFQAIHPYLPFTYGISMMR EAVGGILWDIIMEDLVMMAIYIGITLLIGLALKKVINKSSAKFVSRAKESKLIH >gi|333604167|gb|AFDH01000112.1| GENE 65 84484 - 84930 391 148 aa, chain + ## HITS:1 COG:MA2051 KEGG:ns NR:ns ## COG: MA2051 COG1846 # Protein_GI_number: 20090898 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Methanosarcina acetivorans str.C2A # 13 133 11 131 153 71 36.0 7e-13 MDIYQSDSVMQILSRVFKLHRRHLHELLQNYEVYPGQPPLLIRLSERDGQSQHELAAQMR VKPATLTVMITRMEKTGLLRRGADSKDQRVSRVYLTDKGHQATTAVKKALREIEETCLKG FLTEEKLLFRRLLLQMYENLKDIEEEID >gi|333604167|gb|AFDH01000112.1| GENE 66 84949 - 86697 281 582 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 337 560 132 353 398 112 34 1e-23 MTALLALSRYLKPYWKAAVLAPLLMLLEVYMDLLQPKLMADIVNQGVAAGDLATIRNTGL LMLGVALIGLIGGAGCTVYSSIASQNFGADLRDDLFRKTQTFSFRNLDKFKSGSLITRLT GDIVQVQTLVQMTLRVLVRAPFLAIGGVIMSFMLNPRLALILAAAIPVLFLVLYLLIRVS QPLFLKVQEKLDRVNTVLQENLSGIRVVKAFVRSDFERKRFGEANRDFTDIALKAARTIA LNAPIMTFIMNVSLVAVLWYGGAQTWNLSFPVGDLIAFLNYVTQVLTSLLTVGMMMMFVT RARASAGRINQVLEAEPEIADKPSASANAIGAGHIVFERVSFAYDEDGKELALRDISFTV EPGQTLAILGATGSGKTSLVHLIPRLYDPAAGRVLIDGTDVKDIALAHLRSRVGMVLQQA ILFSGTIRENISYGKPDATQEEIEAAARAAEIHAFIAGLPEGYDTLLGQRGVNLSGGQKQ RISIARALLVRPAVLILDDSTSAVDLATEARIQQALKERMAHSTCLLIAQRISSVVDADQ ILVLEDGRIAARGTHAELLAGSPVYRDIYKSQQGREEVIHGA >gi|333604167|gb|AFDH01000112.1| GENE 67 86687 - 88564 259 625 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 371 609 116 354 398 104 31 3e-21 MAHKPQDSGSSAPEPPMGLGGPAGRGPGPGGPRMTQKVRAKNTGATLGRLSRYLGRQRKG LAAVVLLTVLSAGAGLIAPYLLGRAVDDYILPRDYGGLLKLCLLLLGIYLFSSVMTWFQT YVMAAVSQRTVQNLRHDLFSHLQKLPLHFFDSRTHGELMSRTTNDIENVSNTLNQSVIQL MTSVITIAGSLVLMLTMNIWLTLVTLLSVPVTIYLTGQISRRTRTHFKGQQKSLGELNGF IQETISGQKVVQVLRRERQTAARFKEINDELREAGTKAQIYSGMVGPFNNVVNNFSFALI AAIGGWLVISGWTTLGVIVSFLNYSKQFTRPINDLANQYNLIQSGIAGAERVFEVLDATT EYPDTPQQKKGSSADGRPLNVAGEVVFEDVSFSYKPGSPILTDISFTAKPGDTIALVGPT GAGKTTIVNLLTRFYEIDGGEIRIDGTDIRELDKDSLRGQLGIVLQDAYLFSDTLRENIR YGRLDATDEEVEAAARLANADSFIRKLPQGYGTLMSSEGGNLSHGQRQLITIARAILADP AVLVLDEATSSVDTRTEMHIQEAMNLLMKGRTSFVIAHRLSTIRDADLILVLNGGKILER GTHEELLAAGGFYYELYSSQFRDVV >gi|333604167|gb|AFDH01000112.1| GENE 68 88817 - 90118 1416 433 aa, chain - ## HITS:1 COG:BS_yugS KEGG:ns NR:ns ## COG: BS_yugS COG1253 # Protein_GI_number: 16080182 # Func_class: R General function prediction only # Function: Hemolysins and related proteins containing CBS domains # Organism: Bacillus subtilis # 7 432 8 433 434 438 51.0 1e-122 MESDSYLLNLFMIALLIGLSAFFVAVEFAVVRLRGSRVDQLIAEGKSNARAVKQVLTNLD GYLSACQLGITITSLGLGWLGEPTVEKILHPVFESLHLHESLTGLLSFLIAFIIITFLHV VIGELAPKTIAIRKTEAVALLTARPIIWFNKVMYPFIWVLNGSANQLVKLFGIKPATEHE EAHSEEELQIIINESFESGKINQAEYGYVSRIFAFDNMLAKDIMVPRTDMICLYANKTRE ENLAIIKEQQYTRFPVVEESKDNVIGIVNTKKFFLAYEDDEELDVTTLIQPVMAVSEVIP VNALLKRMQKEGTHIAILIDEYGGTSGMVTIEDILEEIVGEIRDEFDMKEEPEILVKGEG HLVLDGKVSIPIVNDRLLVELETERWDTIGGWLYGHRDDLAEGESLTYENVKFTVLEREK NRYLKLEVVRIDD >gi|333604167|gb|AFDH01000112.1| GENE 69 90328 - 90915 294 195 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKKQVFMLTSALILLAGCDSTGTGEKIETAGTPVSTPVTPSSGTGETSAPVTPSSRIAGT TAPISKPVELPSVTSVSSIPAKPPTQEEKGKSGTLADGSGSIAGDGMTAFDFKAGDGFQF YLENKGAQRLFYRVIYPGGQNLVERTILQPGESHSFTFQKSSQDLPGVHGVYTVYMYNDD GSTIDYALVVRILHL >gi|333604167|gb|AFDH01000112.1| GENE 70 90977 - 94150 3680 1057 aa, chain - ## HITS:1 COG:lin1189 KEGG:ns NR:ns ## COG: lin1189 COG2409 # Protein_GI_number: 16800258 # Func_class: R General function prediction only # Function: Predicted drug exporters of the RND superfamily # Organism: Listeria innocua # 1 1039 5 1055 1066 883 44.0 0 MKLRWLVLVLWIAVAAGLMLTAPNMESLVREKGQITVPEGYSSTKASKLIEEMKKGSPEA EGEQSSVLVFHGTEKLTQAQLDEVKRGVDKLKNAKDSAGVTSVMTHFDKKELEKQMVSAD GKTVLVLVNTAKDGREAKEVRDALYGTVSDVKVEHYYTGNWLIQEDVMASSQEGLKKTEY ITVIFILAILFIVFRSAVAPFIPLLTVGFSYLVSQSVVAFLVKYADFPLSNFTQIFLVAV LFGIGTDYCILLISRFKEELAHSGDKTEAILATYRTAGRTVFFSGLAVLVGFASIGFSTF VLYRSAVAVAVGVAVMLLALVTLVPFFMAVLGKVIFWPAKGSLEHKPSRLWGAVGSFSLK KPLWSLVILAVIIVPFLVAYKGSTSFNSLDEIGEKYDSVKAFNLISSSFGPGDTLPSTVV VKTDKPLDNSEGLAAVEQITRELAKVDGVKNVRSVTRPTGEALDDLQVATQVDKLEGGLG QSGDGLGEIGKGLSEASGALSANAPKLNEAVSGAKQLVDGTNALKTGVVQLGDGLERLEA GLRSGSAGAGELRAGLAQAKASADQLAAASSDLLAGYKQVGGGLGQLTQAYGDVASQASG LAQGLGDVGQGLGGLAQKYPELKSDPDFLKTQGAVTQLQTGAAQLGEGLKQLNQQLAGAS QGLQQANAGFEKAAAGQAALAQGLAQLSDGIAKLQAGIDQAADGQGRIVAKLPELTKGFD KLSSGQKELQQGFAQLNGQLGELTGGLDKSVNGLSQVSGGLKSAQDYLKELSAAPNKQIS GWFMPQDVISGADFQPSLDAYMSKDRKIAKFEVIFEGNPYEVETLEQSGELTAAVERAVK GTPLQNAAYAVDGVTSMNNDLKNISAADYSRTAMLMLIGIALILIVLFRSIVIPIYLILS LLLTYYTSMAITEVIFVRMLGYSGISWAVPFFGFVMLMALGIDYSIFLMDRFKEYRHLSP QQAILEAMKNMGTVIMSAALILGGTFAAMLPSGVMSLLQIATIVLCGLFLYALIMLPLFI PVMVRMFGPANWWPFMGRKERGEDASYSADSASHSLH >gi|333604167|gb|AFDH01000112.1| GENE 71 94159 - 94626 401 155 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_5908 NR:ns ## KEGG: Pjdr2_5908 # Name: not_defined # Def: transcriptional regulator, MarR family # Organism: Paenibacillus # Pathway: not_defined # 1 150 3 152 158 164 60.0 1e-39 MDETLLSQIIDRYESTIFTVNRRLNAMIKDRMPEELTQEQYATLRYLQSRGQCTSSELAE IFCVGKSSITAIITRLADKELIVRMPDDKDRRVTYLALTDKGTAAVNEMRLRIQELLAGV IKHFDGQEAITFIETFEKLADVLVQQPDEGSRHKG >gi|333604167|gb|AFDH01000112.1| GENE 72 94895 - 96580 1751 561 aa, chain - ## HITS:1 COG:BS_glpD KEGG:ns NR:ns ## COG: BS_glpD COG0578 # Protein_GI_number: 16077995 # Func_class: C Energy production and conversion # Function: Glycerol-3-phosphate dehydrogenase # Organism: Bacillus subtilis # 1 554 2 555 555 699 64.0 0 METAFSGDTRKESLWRMEDRIFDVLVIGGGITGAGIALDAQSRGLKTALVDMQDFAQGTS SRSTKLVHGGLRYLKQLEVKVVAEVGKERAIVYENGPHVTTPEWMLLPFYQGGTFGAFST SIGLRVYDFLAGVKKSERRSMLSPQETLDKEPLLKDKHLKGGGYYVEYRTDDARLTIEVM KKAVDFGVQAVSYAKVEAFEYENGRVTGVRVADQLSGETHLIRAKRIVNAAGPWVDTLRE RDGSKKGKTLRLTKGVHLVFDGERFPLRQAIYFDTPDGRMLFAIPRDGKTYIGTTDTNYK EDIAHPVMTTEDRTYIIRAANEMFPSLRLTEQDVESSWAGLRPLIHQEGKDPSEISRKDE IFVSDSGLISIAGGKLTGYRKMAETVVDLVVRQLQEEGGIQVSECQTRTLPISGGDVGGS ARYPQFVEQKVADGQKIGLTVMEARLLAQRYGSNIDKVYRLIETKRGEAETFRMPASLLG SLVYSIEQEMTVKPSDFFVRRTGAVFFNIKWVRTWKEPVIHYMASRFNWTEEQRTAYTAE LERDLHDATVPIDEKTPELVR >gi|333604167|gb|AFDH01000112.1| GENE 73 96746 - 97303 602 185 aa, chain - ## HITS:1 COG:BS_glpP KEGG:ns NR:ns ## COG: BS_glpP COG1954 # Protein_GI_number: 16077992 # Func_class: K Transcription # Function: Glycerol-3-phosphate responsive antiterminator (mRNA-binding) # Organism: Bacillus subtilis # 1 184 2 185 192 226 55.0 2e-59 MSFNNQRVLPAVRKIKDLEKLLTSPFQYIVLLDCHIGMLKSLVDLAKSHGKKPLLHVDLV EGLKNDEYATEYLCQYIKPTGLISTRASVIMKTKENGLLAIQRLFLLDSSALRKSYTLLE RTKPDYIEVLPGVMPHIIKEVGEATGIPIVAGGLIRTVSDVENALEAGATAVTTSDSSLW KHYQA >gi|333604167|gb|AFDH01000112.1| GENE 74 97328 - 98011 867 227 aa, chain - ## HITS:1 COG:BH3225 KEGG:ns NR:ns ## COG: BH3225 COG1285 # Protein_GI_number: 15615787 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Bacillus halodurans # 5 223 4 230 232 239 55.0 4e-63 MSYIFLQKLFMALILGAFIGIDRQLKHKPLGLKTSMVISVASCLITIVSIESVHKYAIPG TTNMDPMRLAAQIISGVGFIGAGVILRRSNEIISGLTTAAMVWAASALGIAAGAGFYKEA ATAVVLIIMAINLIPLFFKWFGPRKLSERNLAILIIVSPSADLSYVIDELHQEFLKVKHI KIKDLKDELRQIQLVVSAPEKHRTTVIYSKIKHITDVVAVEVETISS >gi|333604167|gb|AFDH01000112.1| GENE 75 98019 - 98759 896 246 aa, chain - ## HITS:1 COG:FN1891 KEGG:ns NR:ns ## COG: FN1891 COG0584 # Protein_GI_number: 19705196 # Func_class: C Energy production and conversion # Function: Glycerophosphoryl diester phosphodiesterase # Organism: Fusobacterium nucleatum # 8 240 24 260 261 178 39.0 9e-45 MTANKPMIIAHRGAKGMSPENTLGAFKLGLEQGCEGIELDVHLSADGELIVIHDHTLDRT TDRKGAIAEKTLAEIKEADAGSWYSEAYKGEKVPTLAEVFDLVPASVMINIEIKAPGNGM EQKLADFLSERGRIDNVVTSSFDHKSVRRLKLIEPKAKIGLLYANNLLDPTAYARSFDVE VYSLHPHFRAIDAEDVAKAVENGLKVYPYTANEVHDFKELNEKGVSGIITDFPGRLKEWL QGGAAE >gi|333604167|gb|AFDH01000112.1| GENE 76 99089 - 100447 1759 452 aa, chain - ## HITS:1 COG:CAC0429 KEGG:ns NR:ns ## COG: CAC0429 COG1653 # Protein_GI_number: 15893720 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Clostridium acetobutylicum # 37 452 28 447 447 397 49.0 1e-110 MNKKGMAASLLTAVMLVSAGCGGSDTAGTGDKGGADSGSGSGPKKVVFWHAMGGANTKVV DQLVADYNASQDKIKVEAIFQGSYDDLLSKLKASMGTKEGPSVVQMYEIGSRFMIDSKMV TPMQNFIDADKYDLTQLEPNITGYYTFNDKLFSMPFNTSNPVLYYNKDLFKAAGLDPEKP PATYEEFQKAAEAISKTGKATGGNFAIYGWFMEQFFANQGAEYINNDNGRKELATQSLVN SEAGVQTLTWWKNMVDSKAMNNLGRKTDDSKKAFSAGQVGMILDSTAALKGLVDSSKGKF EVGTGFLPKPANAKDGGVVVGGASLWIMNDRADDEQKATWDFIKFLTSPKEQAYWHINTG YFPITKKAYDEQSVKDNMKSFPQFQTAVDQLHQTKLNTATQGAVMGVFPEARQIVEGAIE EVLNNKKSPKDALDAAAKDITSKIEKYNKTVK >gi|333604167|gb|AFDH01000112.1| GENE 77 100550 - 101374 972 274 aa, chain - ## HITS:1 COG:CAC0428 KEGG:ns NR:ns ## COG: CAC0428 COG0395 # Protein_GI_number: 15893719 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Clostridium acetobutylicum # 4 274 3 273 273 270 50.0 2e-72 MIARRLNNTLLYLLLIVLALVVLYPLLFTVLSSFMTEQEVSKFPPAIVPSQLYWGNFKAA IDNVPVFQFILNSFIVSSAIMVSQVITSAMAAYAFSFLNFTGKNALFMVFLATMMIPWEV TIIPNYLTIKSWGWMDSYPGLIVPFMAAAFGVFLLRQFFLQLPHELFDAAKIDGCGHWRN FFSIVLPLSKPALSTLAVYEFLTHWNSYLWPLLITNKVSMRTVQIGVAMLQHAEVMSWNM ILAGITIVLLPSFLLLALGVKQLVRGITAGAVKG >gi|333604167|gb|AFDH01000112.1| GENE 78 101371 - 102276 967 301 aa, chain - ## HITS:1 COG:BH1077 KEGG:ns NR:ns ## COG: BH1077 COG1175 # Protein_GI_number: 15613640 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Bacillus halodurans # 7 301 18 315 315 269 51.0 5e-72 MPSHESVLSKKKRWRENALAYFFLAPSLIIFATFLFYPMLRSVYLSMTLTDPRGRVAEFV WFDNFVDLFQSGQFYSDLKVTLLFILYTVPTSIIWALLLAAITHNKLKGMKIFQFVFSLP LVISVGTGSIIWLLLFHPTAGMLNYFLSLVHIQAIPWLTDPAWALISVSLMTVWMNMGFL FIVLSSGMQGVPEEIYESAKIDGSGPVRTFIQIVLPLLSPTLFFALIISVIGAFQAFGQI NILTKGGPMDSTNVVVYSIYQEAFVNFRFGTGSAEALILFFIILILTVLQFTVLEKKVHY Q >gi|333604167|gb|AFDH01000112.1| GENE 79 102639 - 103325 584 228 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_0970 NR:ns ## KEGG: GYMC10_0970 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 218 1 220 220 182 43.0 1e-44 MNTSQMSAENAKLQQQLNEENKKYYGGMLVYIRTSDIDERQGEELLLEMLQHLLQAQKEG RSARVVFGTDPLAYCKDLVSQLPSRGRAERFRMVVMIPWITLTWMFLAYAVTGFLTIMAG AGIGRMNEVSPTFLFIAAVDSILVVKVILALMNKTAFNGSERKFRLLFLLLYIVSIGAVT AAGMLLKPYLPVFTVSPWISLLIFAGGYAGQKVMFGGRGKRGGAGAAG >gi|333604167|gb|AFDH01000112.1| GENE 80 103322 - 103684 264 120 aa, chain - ## HITS:1 COG:BH0406 KEGG:ns NR:ns ## COG: BH0406 COG1695 # Protein_GI_number: 15612969 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus halodurans # 9 115 66 169 174 119 58.0 2e-27 MRIEGMIYISTYTQMLKGILEGCILAIISQNEVYGYELSRKLQESGFNYVSEGSIYPVLL RMQKEKWIEGYMKADTRSGGPPRKYYRLTKAGGEVLAQFHDNWSAMKRSVDHILEGGQSR >gi|333604167|gb|AFDH01000112.1| GENE 81 103806 - 104216 373 136 aa, chain - ## HITS:1 COG:PA1353 KEGG:ns NR:ns ## COG: PA1353 COG2764 # Protein_GI_number: 15596550 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Pseudomonas aeruginosa # 6 128 5 134 137 72 34.0 2e-13 MAVLRPYLYSENAREQGAFYARALRGEIVNIQTFGDAPAQYGQDRDRVMHLVLKACGLTF YMADSDRVERGSGLDLTLEFGTDAEAEQIFGALSEGGKVLMPLQRMFWGTMFGRIEDAYG VRWQIATESAINQVEA >gi|333604167|gb|AFDH01000112.1| GENE 82 104456 - 104743 195 95 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315643917|ref|ZP_07897087.1| ## NR: gi|315643917|ref|ZP_07897087.1| hypothetical protein PVOR_00035 [Paenibacillus vortex V453] hypothetical protein PVOR_00035 [Paenibacillus vortex V453] # 11 95 92 175 178 62 38.0 8e-09 MNKSEVREDIDRLAVAAGAFSDDDSYDIRAYVGNYSSSYTFQSSLPFTTYDAQGQVVHEK SYDNVIIIAPGEKKKLDSYYTSNTFVTYRYTFTAR >gi|333604167|gb|AFDH01000112.1| GENE 83 104925 - 105695 748 256 aa, chain - ## HITS:1 COG:SA2259 KEGG:ns NR:ns ## COG: SA2259 COG2220 # Protein_GI_number: 15928050 # Func_class: R General function prediction only # Function: Predicted Zn-dependent hydrolases of the beta-lactamase fold # Organism: Staphylococcus aureus N315 # 1 248 1 251 255 194 41.0 1e-49 MKIRLIRNATLWLEYGGRRILVDPMMSGAGANPPIPNTANDRRNPLVPLPVPAEELLEPD LVLITHLHRDHWDAEAAGRLPKGTPVLCQPGDAETLAEQGFTAVSAVEEEAAWRGLSIAR TSGQHGTGDIGAAMGPVSGFVLRAEGEPAVYIAGDTIYCAEVAEALERHQPAVTVVNAGG AVFTAGDPITMTADDVVSVCRKAPQTRVIAVHMEAINHCLLTREELLARLEEEGLSERTD VPADGQWLEAAGAASN >gi|333604167|gb|AFDH01000112.1| GENE 84 105841 - 106263 481 140 aa, chain + ## HITS:1 COG:BS_lrpB KEGG:ns NR:ns ## COG: BS_lrpB COG1522 # Protein_GI_number: 16077573 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 4 140 3 138 149 110 48.0 8e-25 MFSIDETDHKILQCLLEDATRSNKEIGLKVHLTGQAVGARIRKLEDWGIIEGRTLKWNPE KLGLTVHAMVTVFLKSQNAHGDLQMFASRDSRILEAHRVSGEGCYWLRVQVGSNEDLNAF LDDLLKYGNYKVSLSIGKIK >gi|333604167|gb|AFDH01000112.1| GENE 85 106345 - 106545 228 66 aa, chain - ## HITS:1 COG:lin2124 KEGG:ns NR:ns ## COG: lin2124 COG1278 # Protein_GI_number: 16801190 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Listeria innocua # 1 66 1 66 66 98 83.0 2e-21 MQTGTVKWFNAEKGFGFIEVEGGNDVFVHFSAIQGEGFKSLDEGQRVEFNVVQGNRGPQA ENVVKL >gi|333604167|gb|AFDH01000112.1| GENE 86 106857 - 107114 373 85 aa, chain + ## HITS:1 COG:SA0360 KEGG:ns NR:ns ## COG: SA0360 COG2261 # Protein_GI_number: 15926075 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 3 80 4 81 83 70 65.0 5e-13 MSFLWSLIIGGIIGWLAGMIIGKDIPGGIIGNIIAGFLGAWLGGLLLGNWGPEVGGFYFF PALIGGIVLVFIVSLILRSMGSKRA >gi|333604167|gb|AFDH01000112.1| GENE 87 107445 - 107915 555 156 aa, chain + ## HITS:1 COG:no KEGG:gll1895 NR:ns ## KEGG: gll1895 # Name: not_defined # Def: hypothetical protein # Organism: G.violaceus # Pathway: not_defined # 4 150 3 149 150 192 65.0 2e-48 MAKKFDYSLDYEHLDLRKKPELYTVGRGEQGVLLVEPYKSEILPYWRFKTPEIAKESSGK IYDLFLDYKKAGDFIGMDMARKFLQMGYTRARRYTNHKGGRKYSQEDGSILPYQNDPVKA ESAAIFKAQWEIAKTDEDYIRMKKEHQDKYEKKTNK >gi|333604167|gb|AFDH01000112.1| GENE 88 107924 - 110467 2233 847 aa, chain - ## HITS:1 COG:CAC1672 KEGG:ns NR:ns ## COG: CAC1672 COG1199 # Protein_GI_number: 15894949 # Func_class: K Transcription; L Replication, recombination and repair # Function: Rad3-related DNA helicases # Organism: Clostridium acetobutylicum # 2 835 5 770 791 573 38.0 1e-163 MSGEVRISVRTLVEYAYRSGSIESGFRTATALTEGTKAHQKVQKTYGDSDRKEVFLQTEI LLDGMVFVLEGRCDGLLFEDDGGEVTIDEIKSSTGDPRLVEENRHPVHWAQAVCYAYMYA RQNGRDRMKVQLTYVQVGTEEQQRYVREYSYNEMETAVLEAVRLYAPYAAMQLQNRRERD ASIRELPFPYPAYREGQRQFAGSVYKTIKDGHKLFANAPTGTGKTISTLFPSVKAVGEGL LQRIFYLTAKTLTRTAAEEAFSLMIERGLHMRTVTLTAKDKICFREEVDCRKEMCEFADG YYDRVNGAVLDMLSHEKLMNRSVIEKYARKHKVCPFEFSLDAAYAADAVICDYNYIFDPK VYLKRLPEEVKKQTTLLIDEAHNLVDRGREMFSAELTKAPFLQLKRDFKGRNSAVEAAAK AVNDYFIAFRKEQGSGGSFVLREVAEELPVLLEAFAQQAERELSAPGQGGEAQELLLDTY FAVQSFLRTAKYYDERYVTLAEVQRSDVRLKLLCLDPSALLAQMGKGYRAHVFFSATLAP FSYYMDMLGGGEDDYTVAIPWPFRQEQLDVWIEPLSTRYKDRDKTKLPISRLLGKLVREK PGNYLVFFPSYEYMREVAALFLEQERGPQSGAAVNGEAGGTEAASETASGDGIGLFEAVE VLLQDRLPALDESDGGSTLAEEASSGGSGDEAGSGDRGSRILRILVQQPSMPEEERESFL ASFRADSSRTLIGFAVMGGIFSEGIDLRGDRLTGVVVVGVGLPQVGPERNMIKEHFDRDG RSGFDYAYVFPGMNKVMQAGGRLIRTENDYGTLVLIDDRFLQRRYQSLLPPEWRHFTIPR QKNERTQ >gi|333604167|gb|AFDH01000112.1| GENE 89 110696 - 111172 607 158 aa, chain - ## HITS:1 COG:FN0068 KEGG:ns NR:ns ## COG: FN0068 COG0597 # Protein_GI_number: 19703420 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Lipoprotein signal peptidase # Organism: Fusobacterium nucleatum # 1 148 14 163 165 77 35.0 7e-15 MLFYFTAALVAAVDQFAKALIRATMAVGESVPFWGSMALTHYENSGMAGSRFQGYARVFA VLAVVFIAIVLYYRRKGEIQGPLMDASMGFLTGGAAGNAIDRFWFGKVTDFLEFRPGGGI LNLADIAINIGVVLFLIAGVLDYYRKKQNPLAAGEEQG >gi|333604167|gb|AFDH01000112.1| GENE 90 111291 - 113165 231 624 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 360 597 267 502 563 93 27 8e-18 MAASQERPGGQNPPGSPVTVSPRGGPGHGGMRGRGPVVKPKNFKGTLRRLWAYFGSERKL LTVIFALILIGAALTLVGPYLIGVSVDAMSHPEQGVDFGILKTMVLVLLLAYLIDAVFTF LQSWLMAGVSQRIVMRLRGALFAKLQKLPVAYFDTRPHGELMSRLSNDIDNVSSTISQST TQLMSGVIAIVGSLAMMLVLSPTLTLASLVTVPILFVLTRTITKKTSVLFKNQQIQLGKL NGHIEETISGLQVVKAFNHEEKAIAEFEQVNAELCEVGLKAQIRSGFLMPLLNVINNIGF AAVALVGGILAVRGDITVGVIASFLSYSRQFVRPLNDLANIFNILQSGVAGAERVFEVID EKEEPSDSAEAVELLHPKGHVVFENVSFGYRPDVPILKNVSFDSAQGSSTALVGPTGAGK TTIVNLLTRFYDVTGGRILIDGRDIREYTRDSLRRTFGIVLQDTYLFSGTIKENIKYGRP DATDAEVEAAAAMANADVFINRLPAKYETLLSENGGNLSQGQRQLLAIARVILAKPSILI LDEATSSIDTRTELHIQDALLKVMQDRTSFIIAHRLNTIRDADTIMVIDHGEIVEKGAHD TLIGQQGVYSRMFYNQFKNIEGAV >gi|333604167|gb|AFDH01000112.1| GENE 91 113167 - 115110 263 647 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 357 632 85 356 398 105 30 2e-21 MPISRKYISKYWKPFSAAVAFLTLEALCDLTLPTLMSKIIDVGVAGKQMDYVWRMGGVML LVTALGAISASIRNVISSHVSQKFGAELRSDLFRKIQSLSFENIDRFDRASLVTRLTNDV TQVQMFVNGLMRVFVKAPLLCIGSLIMAARLNPPLSVILAVVVPLVGILIAINMKVGFPY FIKVQQALDRVNGIMREYLSGVRVVKAFNRFDYEVGKFGGANEEYRSRSVTATRVMSAFN PGITLTVNFGIVAVLWLGGLRVDQGQMQAGHIIAFVNYMTQILFSLMLISMVFNMFVRAR ASAGRIGEIFAEENTMAAQIPATAAAVGGAASSVDQPASGTQTGMRTGAHSEARPGSQPG GITAGQTAAQPGALANPAYPGGFTAGGRNPDAAAPSAPQTGGSVEFENVTFSYEGTSGEP VLRRITFSCEPGQTVGIIGSTGSGKSTLVSLIPRFYDAVSGTVKVNGTDVRELEPSRLRE KIAVVPQKTVLFTGTVADNLRWGKEDASPEEMEHAARMAEAHEFIAASPEGYETRLGQGG VNFSGGQKQRLSIARAIVRKPEILILDDCTSAVDAATEARIKDALKKYAEGLTCLLIAQR ITSVMDADKIVVLDRGEIVGSGTHDELLGSCRVYREIFQSQMGKEVG >gi|333604167|gb|AFDH01000112.1| GENE 92 115282 - 115917 762 211 aa, chain - ## HITS:1 COG:BS_ywnB KEGG:ns NR:ns ## COG: BS_ywnB COG2910 # Protein_GI_number: 16080715 # Func_class: R General function prediction only # Function: Putative NADH-flavin reductase # Organism: Bacillus subtilis # 1 211 1 212 213 285 69.0 4e-77 MKIAIIGASGKAGSRILKEAQDRGHEVTAIVRDAAKVSAEGAALLEKDVFDLTASDLKAF DIVVNAFGAAPGQEHLHVDAGNVLIEALKGAPETKLIVVGGAGSLFVDEAKTTRVLETPD FPSAYFATASNQGKNLEILQNTKGIKWTFVSPSAIFALGKRTGQYRTGKDNLLVNSKGES YVSYEDYAAAVLDEIEQPKHENERFTVVSES >gi|333604167|gb|AFDH01000112.1| GENE 93 116345 - 116476 144 43 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVALVAFYDVLRWIVTLLSLVLGIRKLYRWVRRKFRNKRKNHR >gi|333604167|gb|AFDH01000112.1| GENE 94 116792 - 117928 1123 378 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_0442 NR:ns ## KEGG: GYMC10_0442 # Name: not_defined # Def: copper amine oxidase domain protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 7 374 14 371 371 206 38.0 1e-51 MKKSFKLLTLGLAGSCLLAASAGTSYADSAVQAPAAASVSAAAEPVSAPASVKNGAVQVT TKEIKEESPELSVNLQIPVIQGMKDTQYQDELNDIIYRHAMKDVEAVRKQAQGDLAAANG SASELAMPYSVDSVVEVSASGGQEDANRLSMRVVTSVYTGGAHGMPRVDTYNVLNAEEAQ KIELKDLFGENYKAIIDKQISQEIAKHPDDFFEDAFSGITDTQSFQIKDGKAVIVFSPYE IAPYAAGIQEFSVPIAQGGNASAPSRLVVGGEALSEKQGSIYTTTAGTTMVPLRVTAEKL GFQLKWNQEQWAAELSKGAVWTSVYKGKDAYTINKMAPFSLGEAAVIKEDGNMYVPAAFF SKVLKADVTVTGDQLVIK >gi|333604167|gb|AFDH01000112.1| GENE 95 118134 - 119315 1168 393 aa, chain - ## HITS:1 COG:BS_yjlD KEGG:ns NR:ns ## COG: BS_yjlD COG1252 # Protein_GI_number: 16078294 # Func_class: C Energy production and conversion # Function: NADH dehydrogenase, FAD-containing subunit # Organism: Bacillus subtilis # 1 393 1 392 392 491 64.0 1e-138 MSKHILILGGGYGGLLSALTARQHLTAEEATITVVNRFPTHQIITELHRLAVGNLHEKAV ALPLEKLLRGKDINLEIGTVETISADSKRVILSNGKSFDYDKLVVALGSETAFFGIPGLQ EYSFTLKSVNDANRIREHVEARIEAYSQTKNKADATFVVGGGGLTGIELVGELADMLPGL CRSKGVDFNDISLYCVEAAPSILMGFHPELIERATTSLQKRGVTFLTGVAITEMQESVVS LKDGSTIETSTLVWTGGVQGTPVVANSGIEVNRGRATVNEFMQSTSHPDVFLAGDCAVVF PAGAERPYPPTAQLAWQMGEVVGYNLFAAQKGAPMDVFTPVFSGTLGSLGRKDAIGSIGG NQTRLKGLPASLMKEASNIRYLSHIHGLFALAY >gi|333604167|gb|AFDH01000112.1| GENE 96 119353 - 119778 408 141 aa, chain - ## HITS:1 COG:BS_yjlC KEGG:ns NR:ns ## COG: BS_yjlC COG2427 # Protein_GI_number: 16078293 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 1 141 1 140 140 136 58.0 1e-32 MSETSNQTPSTTEKRETQDVLDQLMKPEVQESLTVLVENLPKLAEMVTILTKAYDLAQSV ASDQVLIDDLKGGMNEFVKPITEKAKGVAAAAIEASDRAQAEHSSIGLFGLLKMLKDPQV QKTFRFVQAFLDVQAERQQQR >gi|333604167|gb|AFDH01000112.1| GENE 97 120366 - 120791 471 141 aa, chain - ## HITS:1 COG:lin0586 KEGG:ns NR:ns ## COG: lin0586 COG3610 # Protein_GI_number: 16799661 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 134 7 140 152 117 46.0 4e-27 MIAQLVTSYIASAAFGIIFNVPRNTLIQCGFVGMMGWLVYVALVRSDTNAIVATLAAAFF VTVISRVFARLYKTPIIVFSVAGIIPLVPGGMAYDAMRSFVENDYNLAVQLAAKAFMISG SIAAGLIFSEVMNQLFKRPKA >gi|333604167|gb|AFDH01000112.1| GENE 98 120807 - 121568 767 253 aa, chain - ## HITS:1 COG:SA0700 KEGG:ns NR:ns ## COG: SA0700 COG2966 # Protein_GI_number: 15926422 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 12 250 12 250 253 223 50.0 2e-58 MEQASSPGQTYKIVDVCLLAGKIMLQNGAETYRVEDTMTRIAASYGLHHTHSFVTPTGII FSVDGSDPTKLVRISTRSTDLHKVTLVNGLSRKISDGQLDLQEAHRLLLKVDKANLAYPV AIQIAAAAVSSGCFTIMFNGGWPDFLPAVVTGGLGFIGFLIFHQYVLIKFVAEFLASFII GMLASLFIWTGLGQELDKIIIGSVMPLVPGLLITNAVRDLMAGHLVSGLSKGAEAFLTAF AIGAGIAVVFSFY >gi|333604167|gb|AFDH01000112.1| GENE 99 121624 - 122313 621 229 aa, chain - ## HITS:1 COG:VC2223 KEGG:ns NR:ns ## COG: VC2223 COG1187 # Protein_GI_number: 15642221 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases # Organism: Vibrio cholerae # 2 229 20 247 340 310 66.0 1e-84 MRINKFISETGICSRRKADELVQAGRVTINGALAELGSTAEPGDDVRIDGKPLGTKKKSV YIALNKPVGITCTTERHIPGNIVDFVRHPERIFPIGRLDKDSEGLILMTNDGDIVNKILR AENNHEKEYIVTVNQPITNSFVQGMSTGVRILGTKTKPCKVTRINDHTFRIILTQGLNRQ IRRMCQAFGYQVHRLQRVRIMNIKLDGLPKGKWRDLSESEFSRLTELLD >gi|333604167|gb|AFDH01000112.1| GENE 100 122547 - 122867 378 106 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MITEAAMESKKKFGTGSTLLSSLGVLMLVGSYLISENPAGGESAGIRLLFYTAIGSLGAS LVLGYAGMLKEERGFLKFAGMGSVFLIAAALIAALLMMVLAGFREP >gi|333604167|gb|AFDH01000112.1| GENE 101 123197 - 124093 945 298 aa, chain - ## HITS:1 COG:BS_bmrU KEGG:ns NR:ns ## COG: BS_bmrU COG1597 # Protein_GI_number: 16079456 # Func_class: I Lipid transport and metabolism; R General function prediction only # Function: Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase # Organism: Bacillus subtilis # 4 293 5 293 297 255 45.0 9e-68 MFGKAILIHNGSAGQAETGSRLGAVIGPLAAGIGELTLVQTEEPGDAERICRERGEETDL LLVLGGDGTVHECVNGLAPLADPPVVGILPGGTCNDFSRALYIPQELDRAAETLMRGKTQ PVDIGRANDRYFSNFFGIGLITDASVNINPQLKGTIGKLSYFISTLQTVTSADPFRFTLE HDSGRTDGEAVMLFVANGRFLGTRPLPLTPDALYDGVLDVAIIREAGLPLLKELFKIKNF EEWDSEKSSFEFIRTTSLKLTTDQPMQADMDGEIYVHTPASISVLGKKLTFLVGEEQP >gi|333604167|gb|AFDH01000112.1| GENE 102 124219 - 125088 987 289 aa, chain - ## HITS:1 COG:BS_yoaV KEGG:ns NR:ns ## COG: BS_yoaV COG0697 # Protein_GI_number: 16078937 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Bacillus subtilis # 10 273 13 281 292 136 31.0 4e-32 MNGLIGLLCLIWGYNWVIMKLANGVFPPVLFAGYRFGVGAAALLLFCLFKKVPLPSRKDL KWFILCGILQTAYFNLAIQISLEDISAGLTSVLTYSMPLWLTLMAHFLIPGEKLTTRKTI GLIAGIIGMFFALDVRLGGSFWAMLLALSSGLAWAVSNVIIKRKLAHCDNLQFTTWQMVA GAAGLFLYSAVFEHGESHWGLMPAVYVGFAGIVASAFAFVLWFHILSRAEAGKASVSLLL VPVIGVLSGVLFLGETLRAGTVTGIVFVLIGIWFVNSKKPVRKEERAAG >gi|333604167|gb|AFDH01000112.1| GENE 103 125258 - 125998 897 246 aa, chain - ## HITS:1 COG:BH0447 KEGG:ns NR:ns ## COG: BH0447 COG4200 # Protein_GI_number: 15613010 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 4 245 2 245 247 166 43.0 4e-41 MAAFFNILGAEWLKLRKTNIWLLIFISPLLAFATGLALPVPANEPLIAWTLLLSTMALIH AMLFLPLLTGVFAAYVCRYEHTGGGWKQVLALPVSRSHLFIAKFLLVTGLLAVTQLLFLG GLIGAGFIKGLGASIPWSQLLWPVFGGWLATLPLAALQLWVSIAWVSFAAPLALNVIFTL PNILVANSETYGPFYPWAQPFLAMLPASETSLGGLHVSFETLIYVILGGFVVFFLSGLGY FQRKEI >gi|333604167|gb|AFDH01000112.1| GENE 104 126000 - 126713 921 237 aa, chain - ## HITS:1 COG:BH0446 KEGG:ns NR:ns ## COG: BH0446 COG4200 # Protein_GI_number: 15613009 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 5 237 5 236 236 145 39.0 9e-35 MTGRVLAADFLKIRRTLVWFLVLLGPVGVVGLQAVNFGLRYDYLTKQYANDLWYALLSNI QFLAAPALLLGMTLLTSMIAGYEHQRNSWKQLLALPVSRFSVFTSKLLLVFILLLVSCLL LAAGSVLLGFLLGFGMNVPVMHVIRISLFPLLAGIPILSVQLWLSVAVRNQAIPLTAGIL GTVLSLFSIRLPDWFLWKWPLLVNEVGRPELNVWLGIGTGIVVFLIGLTHFTRQDVN >gi|333604167|gb|AFDH01000112.1| GENE 105 126710 - 127624 264 304 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 11 298 10 302 311 106 27 1e-21 MNEMIIQTFGLSKQYKLRSAVDNVNLQIRKGDIYGFLGPNGAGKTTTIRMLLGLIRPTKG TVQLFGKDLRKEKLAILRKVGSLVEYPSYYGHLTAYENLEAIRRILDVPKQRIDEVLAIV RLTKEAKRPVKGYSLGMKQRLGIAAALLGSPELLVLDEPTNGLDPSGILEIRELIKSMPQ QYGVTVLVSSHLLSEVDQMASRVGIIRGGSMIFEDTIESLRRKAGGQIRIAVDAPQQALR TAASAGCFAVADESSLLLEEAPDEKIAQVVTGLVQAGHSVYRVEEKKKSLEDFFLDLVGE GDSL >gi|333604167|gb|AFDH01000112.1| GENE 106 127701 - 128981 1467 426 aa, chain - ## HITS:1 COG:BH0819 KEGG:ns NR:ns ## COG: BH0819 COG0642 # Protein_GI_number: 15613382 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Bacillus halodurans # 193 405 56 285 309 105 26.0 1e-22 MAAVLYYLPHSFKTQEENRKTNPYARGNDIEKFWHGEAKKLQGAGDEGIDKRIRELKEKY PKADLFWVDGSGKTRLTLPERSDLPTVWEAADTIAFMKKSYDGDPYTTVAFVGEDASQGF MVMQIPRVLMKEERPIYSDRYVIGIVLLAFGLFLFTSWLFFYRIRKRLVHLEEAMGLPDG RDIPHPIAVSKKDEIGQLELAFNRMIEELTTSRQRERKEEGLRKQLIANLSHDLRTPLTI IRSHAYSLQKEPISASGKSSLALIETKSDDLNRLIDNLLSYTLLSAGKYPLQRTEIDVAR LVRASAAAWYPVFEEEGMVMDVGVPEHPVYWKADPQWMNRILDNLFQNVLRHAKSGGYIG LRTEEREGGTALVIEDKGPGMKAPSAEKGAGIGLTIVALMVKEMHLGWDVVSSREGTAIY LFPRDR >gi|333604167|gb|AFDH01000112.1| GENE 107 129059 - 129736 801 225 aa, chain - ## HITS:1 COG:BH0820 KEGG:ns NR:ns ## COG: BH0820 COG0745 # Protein_GI_number: 15613383 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Bacillus halodurans # 1 223 1 230 234 169 44.0 5e-42 MAVKQILYIEDDPEIGKWVNSHLIERGYEVNWLKSGEKAAEFWEKSDLVILDVMLPGLDG FSIGQRMKKNYPDTPVLMLSARTSIDDKLQGLQFADDYVTKPFHPDELAARVEVLLRRTG KLAQAELTLHHLQVNMEENRIVDTRTGEEIILTGKQFQIFMYFLRHPNQILTKEQLYEGV WGDPYIDGDKTLMVHIRYLREKIERDPSQPEIVETIRGIGYRVRA >gi|333604167|gb|AFDH01000112.1| GENE 108 129963 - 130874 593 303 aa, chain + ## HITS:1 COG:BS_ybdM KEGG:ns NR:ns ## COG: BS_ybdM COG0515 # Protein_GI_number: 16077272 # Func_class: R General function prediction only; T Signal transduction mechanisms; K Transcription; L Replication, recombination and repair # Function: Serine/threonine protein kinase # Organism: Bacillus subtilis # 29 295 14 249 256 135 30.0 1e-31 MRMPKRFKHLYTYLHKCFGKSLRSIRGLPFRKGAVIAGTYKIVEKLGAGSFGVAYLALKT DNGQQVVLKRVSPVRGGKKRAEYIFGQETAMLRQLRHPDIPAFYKAFRWRGEFCFAMEYV RGSSLDVLLFREDRAFSEKEALLLVRGLLELAGMLHGQGVVHRDISIANVLLDGDTVKLI DFGLARALSSGGSASDSPAGEHLPRWDADVDDDDPSEKKFRRAVHVTGDFYAAGHLLLFL LYSTYSTEDESAAKGAGLSWEKELLLHPGTKKLLRRLLLTEQPYERASEIQNDIDGILAE LEG >gi|333604167|gb|AFDH01000112.1| GENE 109 130878 - 131057 149 59 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLKKLLTKLLGADKHKGSHYRSHSSSDDFHRHSHKNYNGHNHYGHNHYKKKRSSSSYSS >gi|333604167|gb|AFDH01000112.1| GENE 110 131272 - 133665 1936 797 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_1372 NR:ns ## KEGG: GYMC10_1372 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 749 1 785 865 118 21.0 1e-24 MKRIRVIGLALLLTFLTCTAVFAAAVPRNNGIVTDPVGLLTQTQARQVESGLKNKDYELF VLTAKGLTESEGERLANEAYDQWGLNRNQLMLVITTQPNFVHLVYENEQLSAAVSRSKAK DAKGIVDLKFVPAAGEGKIGEGILAVSGYVNSLAGAGASGAGDSSGSMASIILVVLGLAV IGAGIWAFWQYKRRAAARKRLAEAKQLLDGTQPVLNGMLFSEVFQDLEKQFLQGETKQKA AELENAVVRLQGEAEELRGRLAAQKIPFLLNAKGEAETRNLLQSVQEFVKKLEPSRTQLA EIEKQSTEVRKSVNRAKTGIAEAEEVVEALARRTGYPLTALRKHAEQAKTAYAKADELDE FDFIQAATSVEAALKELDFIKKSVKDFEALEARQPGFLPGIQAMEQELREKARRESLLLT DGDPYALLEQAREETARLGTLLEAGDTEEGGRSAAAIEESVGAARSLVEAMIADRESARK TAHEIEELTGDLGSFDRVYPEESLKVARDYAETHRREQQADYTRMTRAREELGRRLTEIR SGLAPDVQEYRSAREAGTEAQALMTEIRELRTRILGYHDSLDARVRTVRHALDEERSRLR QAASAFGELQVESPELSAMIGDGESRLAQLEELAQAPVLDVDVLEERRRGLAVQAGQAAE RVQQLLREKEETLRTIRQLEGEYRSRHARYGGSISLSPYSSGYETLMEESRRLIARGLFA EAMQRISSGQQLLEQMDRDYQRRMHEEQLRRRGPGGPGGGGNSSGGSSWGGSGGRSSGSS SWGGGSSGGRSSGSSKW >gi|333604167|gb|AFDH01000112.1| GENE 111 133768 - 134640 684 290 aa, chain - ## HITS:1 COG:BS_yvbU KEGG:ns NR:ns ## COG: BS_yvbU COG0583 # Protein_GI_number: 16080452 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus subtilis # 1 290 1 292 292 353 60.0 3e-97 MTITQFQVFVKIAETGSFTKAGLELNMTQPAVSHAISSLEADLGIHLMIRDRKNGITLTH IGKRVLIQMREILQRVENIEQEIAAEKGLEVGTVRIGAFPTAAAHFLPKIMSTFKQKYPN LQLVLHEGTIAEVKEWLSTRFIDVGLVIFPDADMEIVPLFRDKMVAVLPENHVLGSRSSL TISDLSGEPMILCRGGYEAPIIDLFQKSGADLRLAFAASNVATVLNMIREGLGLAILSRL SLSSLPPGLVTLDLEPRVCRDISVAVPSLKEASLAVHLFIQTARELFPRE >gi|333604167|gb|AFDH01000112.1| GENE 112 134738 - 135688 1081 316 aa, chain + ## HITS:1 COG:BS_yvbV KEGG:ns NR:ns ## COG: BS_yvbV COG0697 # Protein_GI_number: 16080453 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Bacillus subtilis # 1 295 1 295 305 337 71.0 3e-92 MERSSRKRTAFLLAFLVLMWGINWPLTKHALIYTPPLLFAGIRTLIGGFLLLFVAIPRYK KLNFKQTWHIYLISAVLNIILFYGLQTVGLGYLPSGLFSAIVFFQPVLLGILSWLWLGES MYGLKMFGLLLGFAGVATITSAGLSGHISFIGILLALGSAVSWAFGTVFMKKTGDRVDSI WMVTLQLLMGGVVLTGTGLSTESVSDIAWTGPFIFSLLFISVFVIAMGWLAFFTLVGSGE ASKVASFTFLIPLISITVSAIFMNEAITINLLAGLILIVVSIVLVNVPPRSFLAAKAKKS KDIPPCASLGQARDFK >gi|333604167|gb|AFDH01000112.1| GENE 113 135790 - 140802 5362 1670 aa, chain - ## HITS:1 COG:BH0916_1 KEGG:ns NR:ns ## COG: BH0916_1 COG3325 # Protein_GI_number: 15613479 # Func_class: G Carbohydrate transport and metabolism # Function: Chitinase # Organism: Bacillus halodurans # 894 1243 37 450 450 226 34.0 3e-58 MKALKQSFVWRWLVLLLCTSMVFSTYLTVVSGQASAQPADIKGHWAEKELGEWHDKGLIQ GYSDGSLQPDNAITRAELMALINRYYKLTASAPIQFTDVTAEQWQYEQISKAVAAGYVDG YSDGSIRPDQPVSRQESAVMLSKLLKLGEASEDALKNIKDAASIADWSKGAVSAMVAKGV IEGYEDGTFRPAGKLTRAETVVLLGRAPSLQTVSYDKAGTFGPASGTETVNGDVAVNVSG VTLQNTVIQGNLLLGKGIGNGDVTLKNVKVAGTVTVNGGGENSIHLVDTILVKVIVHKET GVVRLVAQGNTSVQQTIVQSSVKLEESSLTGAGFIDVIFPKELPAGSTAQLIGAFNSLHV LASGIKIEISKGSIGKVTVDGSDTTLAVGNDASIVSLVLNALAKITGYGSVESVTVNEGG KGSSFEKAPVKVDGPQKGSIIIGLPIGGGWGGSGGSSGGGSTETAKKVIAYVPGWKNWSA SNPIDAAKLTHINYAFTHVKDNKIVSLPAQNDDANYAYLQSLKKDNPKLKILPSVGGWGA DGFSDAALTESARNTFADSIIEYVKKYKLDGVDLDWEYPTQSADGVMKARPEDKQNFTLM LQTIREKLNALGSQDGKYYELTIAVGATQKYLDGVEIEKITPLLDNINLMTYDFAGQWVQ NTEHHTNLYAGNLSVDASVKLYLANKVPASKIVIGGAFYGHLWTDVEAVGGKILGQKAVG NGATPTYNEIISNYNEAGGYKRYWDNEAKAPYLYSEQTKVFLSYDDPQSLHEKGGYVLNQ KLGGAMFWEYSQDQTGALLDALVKGVQGKTLNPDTTTVPAAPAVTGVSEGQTYKTGVLPN WKDAAGTASGATLNGAAYTKGTGITEAGEYTLVVTAAHGKSGKTASTTVKFKVDPQTKVI AYVGGWKNWSEAKPVDASKLTHINYAFTHVKDNKIVPIEVQNDDANYAYLHSLKAQNADL KTLISVGGWGADGFSDAALTEASRQTFTDSIIDYVKKYNLDGVDLDWEYPTQSADGVMKA RPEDKQNFTSLLQLMRDKLNALGLETNRYYELTIAVGAGSGYLKGVEIDKITPLLDNMNL MTYDLSGGWVPKTEHHTNLYGSGNNSVDQSVQLYKKNGVPANKIVIGAAFYSHLWTNVES SANNGLGQKAVGTGATPTYSVTLATYSEANGYTRYWDQDSKAPYLYNAQTGIFISFDDPE SMAEKAAYTLKEKLGGAMFWEYSQDETGALLDALVNGLKGNPYTPDTTSVPAAPQIANVT DGQTYTTGVLPNWTDAPGTVGVATLNGEEYIKGTGITEAGDYTLVVTAVHGKSGKTASTT VKFKVDPRKKVIAYIAGWEDWSVTNSVYANKLTHLNYSFTLVKDNKIITRPEQKDDQNYQ YIHSLKAQNPNLKVLFAVGGWGADGFSDAVLTNEARDTFSNSIIDYIKKYKLDGVDIDWE YPTISADGVMKARPEDKHNYTLFLQMLRDKLNQLGLADNKYYELSMAAGAGPSHLKALEA AEISKYLDNFNIMTYDYSGGWVQKTEHHTNVYGPGLSMETVVKRFIDAKVPANKIVVGIA FYSHLWTDVQSTANNGLGQAATGSGNTPTYNEILEKYNAANGYVRYWDDAAKAPYLFNGS TWLSYDDPESIKAKAQFVQDQGLGGAMFWEYSMDKSGALLDALINVIPVK >gi|333604167|gb|AFDH01000112.1| GENE 114 141342 - 145439 4860 1365 aa, chain - ## HITS:1 COG:DR1736 KEGG:ns NR:ns ## COG: DR1736 COG0737 # Protein_GI_number: 15806739 # Func_class: F Nucleotide transport and metabolism # Function: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases # Organism: Deinococcus radiodurans # 40 674 63 676 678 617 51.0 1e-176 MGSRKFKRMKQLATASLAFGIISSQSLGGIVQAQTSASPTVNLRIMETTDLHTNLVDYDY YKDAAAASVGLAKTATLIKEARKENPNTFLVDNGDLIQGTPLGTYVAQINQLKESGAIHP VYKAMNLLDYDAATFGNHEFNYGLDFLDKSIKGAKFPYINANVYIDDKDNNPDNDVNKFT PYLIMDKTFKDENGNDQKIKIGVIGLVTPQIMEWDKVNLAGKVVAKDIVATAKKFVPEMR AKGADIVIAMAHSGFDGTAAANDQLAENAVLPLSKVPGIDAITFSHSHKVFPTPDVKKLD ALFKDANGNPVAGVDNAKGTINGVAAVQSGYGGSNLGLIDLKLVQEGGKWKVSNSQSSTR YIYDSTTKKALVDTDPAIVQAVAAEHEGTKKYANQPIGETTAPIHSYFALVQDDPSVQIV TNAQKEYVSKYISTTLPQYKDLPILSVGAPFKAGRNGPSEYTDIAKGPIAIKSASDLYLY DNTLKAVKVKGSGVKEWLEMSAGMFNQIDPAKTDEQQLLNSSFQVFNFDVIDGVTYQVDV TKPAKYKVDGAVNDASSSRIVNLQFNGKPIDPNQEFIVVTNNYRASGGGNFPGLKNAELI VDSADENRQALMDYISEQKTINPAADKNWSIAPVAGNVKVTFTSSPSAVTYLPENPHIKS TGATTDKGFSVYSIDLSGKGQPQPDNKNVKVQLLGINDFHGQLDTTTETASGKVGSAPYL ATYLKERKKTNPNTLLVHAGDSVGATAPVSSMERDKPTLEFMNMLKFDVGTLGNHEFDQG VGAMLAQINGGTDTKNKDVTFDKLNFPYVNANVVDEKTGENILPSYVIKEVGGQKIGFIG VATNSTPSKVSPDGLKGVKFVEQAPVVNKAVQELKAKGVKAIVVLAHDPASVKDNVASGE AIDLANAIDDEVDVIFAGDNHAKVNTVVDNKLIVQAYSYGTAFADVDLEIDPATGDIVKK TAEIVDVKQEGVTPDADTVALINKYLDKYPVLKQPVGTTDSVISRNNAYNEEAPLGNLIA DAMRDGMNTDFAFMNPGGIRADLPKGDIKFSDLAKIQPFGNTLVKMTLTGAQVKTLLQQQ WGKKSDGSADTKTLQISGLKYTADFSKPAAERIVKLTKADGTPIEDAAEYTVTVNNFMAA GGDNYKVLVEGKNSQAGLIDLDVFYNYITKTFKGGKITASLDGRIVNLKSFADVPQAHWA YKVIQELSGKQIIDGIADNRFEPEQDVTRAQFVNMIVKQMKLVSSKPSAFKDVPAGSWYA EAVAAASEKGIVEGNSADTFAPDQKITREEMAVMITRMYAQLQGTTGTPKAIFTDGGEIS AWAKTAVETAAEKGLMTGRADGVFAPRAKATRAEAAQVIYNGITK >gi|333604167|gb|AFDH01000112.1| GENE 115 145706 - 147166 1649 486 aa, chain + ## HITS:1 COG:SP1382 KEGG:ns NR:ns ## COG: SP1382 COG0366 # Protein_GI_number: 15901236 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Streptococcus pneumoniae TIGR4 # 3 481 2 480 484 503 51.0 1e-142 MTRNHTMMQFFEWHVPADGSHWKRLKELAPELKKKGFDSVWIPPVTKGQSDQDTGYGVYD LYDLGEFDQKGTVRTKYGTKEELLEAIKACQDNEICVYVDLVMNHKAGADEKELFKVVQV NDQNRNEVISEPFDIEGWTKFTFPGRGDKYSAFKWDFGHFNGTDYDAKEDKTGIFRILGE NKSWNDNVDDEFGNYDYLMFANIDYSHPGVRKEMITWGKWLVDTLQCDGYRLDAIKHINH DFIREFASEMIKERGENFYIVGEFWNPEVAACREFLDKVDYKIDLFDVALHYKLHAASQA GKDFDLTTVFEDTLVQTHPLHAVTFVDNHDSQPNESLESWIEDWFKQSAYALVLLRKDGY PCVFYGDYFGIGGEEPAEGKAAAIDPLLYARQRKAYGEQEDYFDHPNTIGWVRRGDAEIE GSGCAVVISNGEDGEKRMFVGEERAGQVWLDMTGTREDEITIGEDGFADFPVNGGSVSVW AQPDEG >gi|333604167|gb|AFDH01000112.1| GENE 116 147673 - 148056 345 127 aa, chain - ## HITS:1 COG:BH2086 KEGG:ns NR:ns ## COG: BH2086 COG0640 # Protein_GI_number: 15614649 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus halodurans # 8 96 8 97 109 102 55.0 1e-22 MGAAEPNQDVFQAIADPTRRKVLNLLAGQEMPVNAISGHFPMSRTAVSKHLRILADAGLV QERKVGREKRYRLQPEPLLELKRWLAYYERFWENRLSVLKHLVEADEPGESGGEPSGLKA AKPGSRP >gi|333604167|gb|AFDH01000112.1| GENE 117 148058 - 148480 508 140 aa, chain - ## HITS:1 COG:BS_yndB KEGG:ns NR:ns ## COG: BS_yndB COG3832 # Protein_GI_number: 16078836 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 3 139 4 143 144 135 53.0 2e-32 MTNTPNTLPDIRQTQLFNAPIQKVWNAVATSEGIAAWFMPNDFQPELGYEFHLEAGPFGK SPCKVTELDPPNRLSFRWGKDWTLTFELADLDGKTEFTLIHAGWDPEKVTEFGQSHAEVR ERMSGGWVGLVEALRKQVEA >gi|333604167|gb|AFDH01000112.1| GENE 118 148507 - 148893 381 128 aa, chain - ## HITS:1 COG:no KEGG:BL00252 NR:ns ## KEGG: BL00252 # Name: not_defined # Def: hypothetical protein # Organism: B.licheniformis # Pathway: not_defined # 5 128 7 137 153 77 36.0 2e-13 MSEELLKKLRYKEGPALVLNAPEGYRLGIETEAADREEDKAAFLQLFVNHGQEVDEWVSK VIPMLREDAVFWITYPKQSSKVKTDINRDTLAAKVQNNTEYRPVSNVAVDDKWSALRFRR SDLVKSKK >gi|333604167|gb|AFDH01000112.1| GENE 119 149012 - 149503 463 163 aa, chain - ## HITS:1 COG:BH0670 KEGG:ns NR:ns ## COG: BH0670 COG3708 # Protein_GI_number: 15613233 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 17 162 15 158 159 108 40.0 3e-24 MNMKSVFANKPSLRLAGVSVRTTNAAEAGPEGKLPQLWQQFFGSDIASRPGIENPHLIYG LYTDYESDASGEYTALLGHEISEETTGSAFSGLQFADVPAARYMIFETRKGPVKDVVPQL WHEIWAYFQNAAEQRTYTGDFEVYDGRGFDPENCVVQVYIAIR >gi|333604167|gb|AFDH01000112.1| GENE 120 149570 - 150508 977 312 aa, chain - ## HITS:1 COG:lin0464 KEGG:ns NR:ns ## COG: lin0464 COG2378 # Protein_GI_number: 16799540 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Listeria innocua # 1 312 1 310 310 177 31.0 2e-44 MKIDRLLAMTVLMLNRGRISAKELAERFEVTTKTIYRDMETLSRAGIPVVAHQGVSGGFE IMEPYTLARQLVSLKEISSLLAAVKGVSTALDDQTYANLAEKVQGLLLRTDTADWERRKD EIVFDFHPWGQGEAAKNKVSLLKHAIEESRRAAIAYVNTNGTETERVVEPAALILKGSVW YLHAYCTMRKEFRVFRLSRIADLTVLSQASEPREVPPLEGYGWNRQWLAHKEVEMTLHFR PEVRHRVGDAFPPGLVSLLPDGSLCVQGVFALDEWFYGMLLSFGDSLKIEHPSSLAGEIR ERARKILLRYEN >gi|333604167|gb|AFDH01000112.1| GENE 121 150801 - 151358 718 185 aa, chain - ## HITS:1 COG:BS_yckF KEGG:ns NR:ns ## COG: BS_yckF COG0794 # Protein_GI_number: 16077414 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted sugar phosphate isomerase involved in capsule formation # Organism: Bacillus subtilis # 1 185 1 185 185 231 62.0 7e-61 MQTTQYLAEIREELHRTAEAVVSREAEELADAILNAGKIFAAGAGRSGLMMKAFAMRMMH LGFDAYVVGETVTPNLTKDDVFIVGSGSGETKSLVSMAEKAKNLGASVAAITIYPESALG RVSDIAVKLPGSPKDKSDNPYPTIQPMGSLFEQTLLLFCDAIILRLMEKKGYTSETMFGR HANLE >gi|333604167|gb|AFDH01000112.1| GENE 122 151365 - 151997 877 210 aa, chain - ## HITS:1 COG:BS_hxlA KEGG:ns NR:ns ## COG: BS_hxlA COG0269 # Protein_GI_number: 16077415 # Func_class: G Carbohydrate transport and metabolism # Function: 3-hexulose-6-phosphate synthase and related proteins # Organism: Bacillus subtilis # 1 210 1 210 210 284 78.0 7e-77 MELQLALDLVNIPEGIELVKELEPYIDIVEIGTPVIINEGLRAVKEMKQAFPNLKVLADL KIMDAAGYEVMKASEAGADIITILGAAEDMSIKGAVEEARKQNKKVLVDMISVKNLEERA KEVDAFGVDYICVHTGYDLQAVGKNSFEDLQTIKRAVKRAKTAIAGGIKLSTLPEVIKAQ PDLVIVGGGITGQDDRKAAAAEMQQLIKQG >gi|333604167|gb|AFDH01000112.1| GENE 123 152296 - 152658 384 120 aa, chain - ## HITS:1 COG:BS_ytcD KEGG:ns NR:ns ## COG: BS_ytcD COG1733 # Protein_GI_number: 16079955 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus subtilis # 1 106 1 106 126 129 59.0 1e-30 MGDQLFKQSVELTLKVVGGKWKPVILCHLTEGTHRFGELKREMPDITQKMLTQQLRELEQ DEIIHRKVYKQVPPKVEYSLTPYGLTIKQVLNVMSEWGANHQKKMHTAPAGPPHTEATES >gi|333604167|gb|AFDH01000112.1| GENE 124 152938 - 153969 1220 343 aa, chain + ## HITS:1 COG:BS_yvbT KEGG:ns NR:ns ## COG: BS_yvbT COG2141 # Protein_GI_number: 16080451 # Func_class: C Energy production and conversion # Function: Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases # Organism: Bacillus subtilis # 16 338 11 331 336 433 63.0 1e-121 MADTNQPAKSITRIPLSILDLAPVVLGATPADSLKNTLDLAQHAEQWGYHRYWLAEHHNM PGIASSATSIVIGHVAGGTKKIRVGSGGIMLPNHAPLIIAEQFGTLESLYPGRIDMGLGR APGSDQLTARALRRGPESDGQHFPQQLEELRGYLNPGPGASPGRVRAVPGEGLNIPVWLL GSSGFSAQLAGQLGLPFAFASHFAPDYLIAALELYRSSFRPSEALKEPYVMIGVNVFAAD TEEEARRLATSHEQQFLKLIRGQTGLLNPPVDNMDELWSPHEKAIVRKQLSITAAGTKET VRERLDYLLSETQADELIVTSQIYDHGARLRSYELLAEAAGEQ >gi|333604167|gb|AFDH01000112.1| GENE 125 154255 - 155460 1170 401 aa, chain + ## HITS:1 COG:BS_yjiB KEGG:ns NR:ns ## COG: BS_yjiB COG2124 # Protein_GI_number: 16078286 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Cytochrome P450 # Organism: Bacillus subtilis # 16 370 18 370 396 276 42.0 8e-74 MAVKEQLFIHEITGFRTKDEFWNPYPWYKKMREESPVFYDERQDTWNVFLYDHAKQVLSD YKLFPSKRDRSLIPVPLSDNKVNLIFSDPPDHRKRRGLLSKAFTPHSLEDWKPRIQNIVN ELVANVAEKRSVDLVKELAVPLPVTVIADLLGVPSKDWRQIKNWSDILFMPHDFQRIEEM QAAKARASKEFVEYLLPIVGQKRTQLQDDIISDLILAEYEGASFTDAEVAQTAMGLLGAG NETTTTLLTNMFYSLAKDQPGAYGQLREDRSLVPQAVEETLRYRFAASLDRRIGEDTDVF GPKMKKDQLIIAWVSSANRDENRFPDGESFDVRRKDIKHLTFGSGQHFCLGAPLARMEAV KALETFVERFSDYSIPDDFRPQDHLPPNNHNLNSLPVVVEE >gi|333604167|gb|AFDH01000112.1| GENE 126 156121 - 156675 398 184 aa, chain + ## HITS:1 COG:mll3776 KEGG:ns NR:ns ## COG: mll3776 COG0596 # Protein_GI_number: 13473241 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Mesorhizobium loti # 5 138 2 135 279 165 57.0 5e-41 MSERMIRVKDMELCTESFGNPAHPAVLLIMGATASMLWWEEDFCRLLAEKGFLVIRYDNR DTGRSVSYEPGQPGYTFEDMADDAIAVLDAYEVEKAHFAGMSMGGMLIQIIALRHPHRVQ GISLLSTMYFGPGWEELPPMEAKVELSSIPWERWTGPIRKRSFGTPLTNGASLPGPSICL TRKG >gi|333604167|gb|AFDH01000112.1| GENE 127 156570 - 156965 310 131 aa, chain + ## HITS:1 COG:mll3776 KEGG:ns NR:ns ## COG: mll3776 COG0596 # Protein_GI_number: 13473241 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Mesorhizobium loti # 3 128 150 275 279 102 42.0 2e-22 MGEMDGSDPQTLLRNAVDKWRILAGSKHLFDEERVTALAERDIARALHYASSFNHSYVTG GEAYLGRSAEIQAPTLVIHGTEDPIIPYGHGKALSDSIPGAELLTLQGTGHELPRADWPA IIGGIAKYAAL >gi|333604167|gb|AFDH01000112.1| GENE 128 157125 - 158627 1375 500 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKSDHGLKQALDKSFDNIAVPESLYQFAGELPEKFDAGELEHTPAPGQVPSVRPRRYRRV AAGSAAAAVLVLVFSFGVKMSPAFASFVKGVPGFQIAVDWLTDVRKKDGVQNAIDNGYSP IEPVTKQFGGTTITIGDIYLTEEELIYKVFVRTDEFDVSDEDRNMDIWVTPRDLPAGGSR TSASVTTEGNKPVRQETYKFQLSPGEDSAGGLLDYGSELQFTVQKHTSDPALRKTDIDEI GKIGVPFDSSKILHNKVFRPEIAAAVKDRDWKELKVDKLTIQPTTMNVILKGREGWGYDF PREDEEGAPYLKDDKGSVYPYDPSGPGLVLKDGYLQLPFSTSVFFDKDVRKLVLHIGKVT VTEQKPEVAFKLSMNEKFPKTVTFKNQDIVIEGAEYHKEGYLQLKVRKGTLDKKLEKETR FIGEKLPEKSVDEYDEFMRQEESIREGLGIPGYGKLEDNEQSSSFNVYLLAEKKDSYGLS LVRSNAEVIVNQDLPIDLQP >gi|333604167|gb|AFDH01000112.1| GENE 129 158624 - 159193 441 189 aa, chain - ## HITS:1 COG:BS_sigW KEGG:ns NR:ns ## COG: BS_sigW COG1595 # Protein_GI_number: 16077241 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog # Organism: Bacillus subtilis # 7 177 6 184 187 79 31.0 5e-15 MELETEQQQLEAIRQGDKDAFRALVNPLIAKSYRSALAILGSKQLAEEAVQNTLIEAYST IMSGREIRRFQGWFSRVVANRSIDVARKEQNYRQSLDIDDLMIPDQGSSPLEDLLRKENS QRVIEAVLALKLQQRMVIVLYYFQELSIEEIAEMLGLKAGTVKSRLYHARLKLSRDLHLT RPQTKEIMI >gi|333604167|gb|AFDH01000112.1| GENE 130 159261 - 160139 713 292 aa, chain - ## HITS:1 COG:YPO1952 KEGG:ns NR:ns ## COG: YPO1952 COG0726 # Protein_GI_number: 16122198 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted xylanase/chitin deacetylase # Organism: Yersinia pestis # 36 261 44 278 673 110 29.0 5e-24 MKNIVLAACGIFFGVLLIFTLGWDPNGRENAAGPVYYENKAIVLLYHDIRKTAGNRKDLP STVTPEQFEEHMEMLRDRGFHIVPMEQFVQFMREGGKLPPNAVVLTFDDGYESFYTEALP ILKKHGVTASNFIVGISSDLFNPNADPHLNWNQIRELKEAGMGIYNHTYDLHRKIPEDET DLMTPALTARMFLEQKKRNEIDGEYRKRIRSDIAFLEKRLDDETGKHRRLLAFPYGAYTD AVAVEGRRAGIELFFSIEDGINQPGSEIVRRINAGEPYITADALWSMLKKVF >gi|333604167|gb|AFDH01000112.1| GENE 131 160396 - 160635 74 79 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MEAADFFASAGEKRSPDQRNGRTSLIEITPRGREVFRKVPKAGIGANSEILGSWPEGELS RLEETLEKLNHSLADWEKK >gi|333604167|gb|AFDH01000112.1| GENE 132 161024 - 162406 1550 460 aa, chain + ## HITS:1 COG:BH2101 KEGG:ns NR:ns ## COG: BH2101 COG0334 # Protein_GI_number: 15614664 # Func_class: E Amino acid transport and metabolism # Function: Glutamate dehydrogenase/leucine dehydrogenase # Organism: Bacillus halodurans # 18 460 16 458 458 675 75.0 0 MGVSLGGKAVNEVAAKTYIEEVYQTVLQRNSNQYEFQQAVKEIVESLVPVFAKNPHYMKA GILERLVEPERLVSFRVPWVDDQGNVRVNRGFRVQFNSAIGPYKGGLRFHPSVNESIIKF LGFEQIFKNSLTGLPIGGGKGGSDFDPKGKSDGEVMRFTQSFMTELSRYIGQDTDVPAGD IGVGAREIGYMFGQYKRIRGGFEAGVLTGKGVVYGGSLARPEATGYGTVYFVHEMLQAKG LSFEGSTVVVSGSGNVAIYAMQKAQQFGAKVVACSDSGGYIYDPNGINVETVRQLKEVER KRISEYTLLHPGSFYHEGCDKIWTIPCDIALPCATQNEINITSAKTLIGNGVKAIGEGAN MPTTLDAIDAFLQAGVLFGPAKAANAGGVAVSALEMSQNSMRQSWTFEEVDAKLHQIMKN IYQASIQAAAEYDHADNLVVGANIAGFKKVADAMIAQGII >gi|333604167|gb|AFDH01000112.1| GENE 133 162999 - 164363 1290 454 aa, chain - ## HITS:1 COG:lin0220 KEGG:ns NR:ns ## COG: lin0220 COG1653 # Protein_GI_number: 16799297 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Listeria innocua # 100 389 46 344 418 83 23.0 7e-16 MSNKPDRITFQTRFEEMVGTLRKEILSSIRPAGDYLPSELALADQYLLSKKSVRKALDIL VSEGLIEKVPRVGNRIIKPDAEHAVTVRIGCYPSLDSETGLQELLRQFQLQHPHIQVETA ALPYTNYPDSVRGYLSSGWLDVMSLNNWNFLEMADRDALDLFEPRPPNPAHYSFLPDVFV RSGKQAAQPMLFSPVILCYNKTLFRRLRLPEPDSSWSWDRLSEVSVRIKEERGISGFYAH IASTNRFPVFLLQNGFKFRRTENGCRFDDPLLWESLETFRDLIHTQGPVPSFLSEGDADA EKLFAQQKTAMIMTTYYGLKYLNDLPFEYDLAPLPYTDRAKTLLLVTGLAVNRASRQKEA AGMLVDFLCSEAAQLSVRRNTLSIPASKSAAEWEGAEALYRPSRYHMYREIVPTFGGYEE LNITIEELDRLRSELKLFWSNLEQPESVIQRLGK >gi|333604167|gb|AFDH01000112.1| GENE 134 165065 - 166876 1933 603 aa, chain + ## HITS:1 COG:CAC0805 KEGG:ns NR:ns ## COG: CAC0805 COG0840 # Protein_GI_number: 15894092 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Methyl-accepting chemotaxis protein # Organism: Clostridium acetobutylicum # 217 599 286 668 668 173 28.0 8e-43 MKGLNRLRSVQGKLFIIIAAALLLPASLLGYLTYKQTEFVNYTAVTGKKEELEKLSPRFA KMFSEAEKLVLEAAAKPEMQLDKYAFPEPKRTDYQNMQKVNDVRQNDFYVNFFPTLLDQS YYLSMFYSTVKGQSYIYPKVPLEVDLTNFDTRERGWYKAAIANPDKVNWTEPYLDAVNTS ISTMTLSKAVKDASGNVIGVIGLDFGLNAMAGVMRDNIKIQTLWILGITFVIGMTGLYLF VRQFAARIKALRSGMHKLEAGDFTHKVKLKGQDEIADLARSFNDMALSLAGLIRQVSVSA HTVTEVAGEVFQQTKSFSGSSLEVTRSVEEIATGAGEQAAVAEQNSQMVNDIDSLMLRLR EDTGETVAIAQDTEELSAAGLRQLDSLQDLAAEGTRKNEHTYAIVHALKTKSEEIGHIIR IIREIASQTNLLALNASIEAARAGEHGSGFAVVAHEVKKLAQQSEQSADIINSIVMDIQQ EIGSTLSSFSQYNELMSQQNQSLEYTKVAFAGISDAVERTTSRIQVMSRSIDKITAIKDG MLNSISNLSAISQQTAAGTEEVAATMEEQRTAVVALTDMSDQLKATAQHLIGETKRFKLE PDS >gi|333604167|gb|AFDH01000112.1| GENE 135 167038 - 167538 461 166 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_0330 NR:ns ## KEGG: Pjdr2_0330 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 1 166 1 162 163 126 38.0 4e-28 MGTRLLAEQLIQQRYPHLRYVRVHTDGKNTAVIYAWNEELLLTAEDMANLKEFASSYLLP HVCFKVKPYDQLKTDSIPQARIQELPERIWKAAVARESNQYRIAAALNDLFTMSIRFTFS RYDSVTGTVHFVARASIPVTDAVKERVQRYLYEMIPLGTRSEVTYY >gi|333604167|gb|AFDH01000112.1| GENE 136 167700 - 168368 741 222 aa, chain - ## HITS:1 COG:CAC3658 KEGG:ns NR:ns ## COG: CAC3658 COG1285 # Protein_GI_number: 15896891 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Clostridium acetobutylicum # 2 220 6 228 229 240 49.0 1e-63 MVQFDYLLRVLVAGICGALIGYERKSRSKEAGIRTHFVVAVGAALMMTISKYGFQDQLDW PNLGLDPSRVAAQVVSGVGFLGAGMIFMQKQTVKGLTTAAGIWATAGVGMAVGSGMYGLG IGVTLLILAAQKVLHGRFNWLAAPKSEHLFMRLANEPDALENMLAAIRGRGIKVLSFTMD NATKETDEIVLEITVRLPESYRMEELLSLTREVPGLLTIEVQ >gi|333604167|gb|AFDH01000112.1| GENE 137 168472 - 169779 1241 435 aa, chain - ## HITS:1 COG:STM0524 KEGG:ns NR:ns ## COG: STM0524 COG2233 # Protein_GI_number: 16763904 # Func_class: F Nucleotide transport and metabolism # Function: Xanthine/uracil permeases # Organism: Salmonella typhimurium LT2 # 11 426 11 431 432 244 35.0 3e-64 MRVTLTPKIGLAGLQWMFFILMNTIVVPLTLGHVFQLPPGQIAFSLQVSFVLTGAACMLQ AYWGHRFALMDGPAGVWWGFTLSIATAAAASGADMKAVGGGLAAGYLLSGLMMAVLGLLG FARIMRRLFNPVVISVSLFLLSAQLMASFFTGMLGVGEDGRMNPPVALLSVLIALFVAVL YLKGRGWVSNFAMLFGILLGWAAYGLTFQAPGSMPDHAAAVQGLFPWGSLRVDAGIMAAS FIVGFINMSNTVTSLKAAEKLYGEAATESQYRRSFLITGLMTLLTPVFGLIPFGTFTSSM GLLESMKILHRQALAIGGGLFLVLGLIPPLGGWFSGLPVSVGSAVLFVAYLQMFGTAVRS VEGTRFNSKTIYRLALPILLGVSIMNTPSVVFSALPVYIRPLAGNGLVVGILMSLFLETC INWTKLDIAKEKGYD >gi|333604167|gb|AFDH01000112.1| GENE 138 169782 - 170243 499 153 aa, chain - ## HITS:1 COG:PA2499 KEGG:ns NR:ns ## COG: PA2499 COG0590 # Protein_GI_number: 15597695 # Func_class: F Nucleotide transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: Cytosine/adenosine deaminases # Organism: Pseudomonas aeruginosa # 3 153 2 151 151 143 44.0 9e-35 MDSTDVFIKRAVELACTNTREKKGKPFGAVIVKDGRIIAEGVNDVLETHDPTAHAEIQAI REASRVLRQPDLSDCELYASGEPCPMCLSAVYWAKFKAVYYAYTEEEASRIGMSTKFVYD QLALAPEKRVVQLVRVEPDCPDHPYAVWKESQA >gi|333604167|gb|AFDH01000112.1| GENE 139 170376 - 171254 830 292 aa, chain + ## HITS:1 COG:BS_yclA KEGG:ns NR:ns ## COG: BS_yclA COG0583 # Protein_GI_number: 16077430 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus subtilis # 1 289 1 290 290 166 35.0 5e-41 MDLKQLHYFKAIAEEGQITAAAKKLHIAQPPLSQQLKAMEETLGAALFRREGRRMLLTEE GRTLYKHAVKIISSMEEAQEEIHAVRSGWSGKLCIGVNTLSDDLLPRILGEFRQNYPRFT FKIHQNESSLLCRLLKEQAIDLAIVRMPLPLPLQDFTVHYVRSERYCFVTAADDMRAQSP ITFEQIREYPLIIPSTEGLGLHHMIHEEFAKRRLEPDIVCECSDMSTLLQLVSSGLGAGI VPETVPKLHPGPLLRYIPLEGDILPAQSALIGLRDGWLSRASRSFIDAYRNW >gi|333604167|gb|AFDH01000112.1| GENE 140 171256 - 172002 787 248 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_3013 NR:ns ## KEGG: Pjdr2_3013 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 5 237 5 238 251 213 49.0 5e-54 MLPTSEFHTYKPAILSLPADPLTKEDLLTDDFLMKRSGRLAMYYAPHNEFVRPAAQVVIV GITPGWTQMKTAFETARAGLLQGLPDDEIVRKAKEAARFSGSMRRNLISMLDGLELHRYL GLASSEELFTQGIGSVLHTTSLLRYPVFVQGKNYTGAQPPLLSNEFLRETAFAFTKEEVE RQPGALIIPLGKTVEGLLQRMEEEGLLGECGILHGFPHPSGANGHRRKQFAEHREAMKRR LEEKFGRA >gi|333604167|gb|AFDH01000112.1| GENE 141 172334 - 172849 502 171 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_1500 NR:ns ## KEGG: GYMC10_1500 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 6 132 5 131 146 92 39.0 7e-18 MEKEARFSQKTAVLLERVRRLGLSDEVLLASAASGDVKPLQEVSGSDSDYEDFFVYGEAH GEQIAEGIRNGYRMKFNTLGGLHAWLKERLGREAETDFTASVGRIDGLSLTVDEAELLRG SLASNWLLREVPLQAEGQADQASASGDAPALSAPGQNGTYSLLLKFLLERD >gi|333604167|gb|AFDH01000112.1| GENE 142 172934 - 174022 875 362 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 44 362 11 328 329 341 52 2e-92 MSQERHTTAPDASLAALKGKDRGATGAAVKDEVPGSPDKNRDVLIDVQGLKKYFPASRSL FGRTTRELRAVDDVSFRIHRGETFGLVGESGCGKSTTGRCIIRLHDVTSGEIRYDGRDMA AMTEKELKPYRKRMQAIFQDPYSSLNPGMNVLQLISEPLEIHSAFSRAERRERVLELLAK VGLKSEHADRYPHEFSGGQRQRISIARSLAASPEFVLCDEPISALDVSVQAQVVNMLEEL QDEFGLTYLFIAHDLSMVRHISTRIGVMYLGKLVEVAPSEELYTSPAHPYTKALLSAIPV PDPKAAPAGGRILQGDLPSPLESITGCKFRSRCPFAIGRCAVQEPELREIAPGHYAACHL HE >gi|333604167|gb|AFDH01000112.1| GENE 143 174019 - 175050 772 343 aa, chain - ## HITS:1 COG:CAC3642 KEGG:ns NR:ns ## COG: CAC3642 COG0444 # Protein_GI_number: 15896875 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component # Organism: Clostridium acetobutylicum # 1 343 1 334 340 409 59.0 1e-114 MASLLSVRDLKTSFFTREGEVQSVRGVSFTVEKGEMVGIVGESGSGKSVAAKSLIRLIQP PGKIVGGEVTLQGTDTLRLPEEELRKLRGNRVAMIFQDPMTSLNPVVKVGAQLTEVIRRH QKLGRKAARLRAIELLREVGIPSPEKRIDQYPHEFSGGMRQRVMIAMAISCRPELLIADE PTTALDVTIQAQILDLMKNLCDTTGTSVLLITHDLGVVAQVCTRVVVMYGGLVMEEGPVE AIFETPRHPYTQGLLRSIPKTGGGSREKLVPIEGTPPNLLDPPPGCPFMERCPHAMEKCL RLPPYYEAQPGHRSLCWLAEMPGSRDSGSAPQAADTKRKEGDS >gi|333604167|gb|AFDH01000112.1| GENE 144 175076 - 175921 887 281 aa, chain - ## HITS:1 COG:lin0184 KEGG:ns NR:ns ## COG: lin0184 COG1173 # Protein_GI_number: 16799261 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Listeria innocua # 6 274 29 293 297 301 58.0 7e-82 MNSMRWRLLKAQLLRQKSGLAALILLALYALAAVFAFAVPHDPNAIHLTERLQPPSAEHW FGTDDNGRDYFARALYGGRVSLSVGFLSMILSVIIGTAVGTISGYFGGKTDSLIMRGVDI LLSIPSFFLMLILNAYLKPSILTIILIIGLLSWMYISRIVRAETISVKEREYVLYARVSG QSTFRIIARHIIPSIVPTIIVAATISIAGTIMMESALSFLGLGVRPPYASWGSMLNNAKG YLGENPYLALFPGLFILTTVLSFNYLGDVFRSAFEPKVNRR >gi|333604167|gb|AFDH01000112.1| GENE 145 175929 - 176879 287 316 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|167855436|ref|ZP_02478201.1| 30S ribosomal protein S21 [Haemophilus parasuis 29755] # 5 313 5 313 320 115 26 3e-24 MGKYVLHRILQLIPILLFISIVSFALIRLAPGDPVLSFVTPNMSPEDVERIRQNMGLDQP LYIQYLLWLKNVLAGNFGYSLNNHRPVLTLIVERLPATIGLMGSAFLLSLLVAVVLGLIS AVYKNKLVDRVLSLLSYIGISLPGLWFALILIYVFTVKLHWLPSMGMRTIGVQSAWDVIK HGIMPCLVLCITHVSVFMRYIRSSTISQLEEDYVQIQYAYGSTRRTVLFRHILRNVLLPV ITLFGLSFAEIITGAFIVESIFSWPGMGSLGINAVFGLDYPLIMGMTMMSSFLLIFGNLL ADVLYGLVDPRIKTMR >gi|333604167|gb|AFDH01000112.1| GENE 146 176938 - 178515 1896 525 aa, chain - ## HITS:1 COG:lin0182 KEGG:ns NR:ns ## COG: lin0182 COG0747 # Protein_GI_number: 16799259 # Func_class: E Amino acid transport and metabolism # Function: ABC-type dipeptide transport system, periplasmic component # Organism: Listeria innocua # 5 524 3 522 524 465 46.0 1e-130 MKWSKSLTAVLMSVVLLSASACSGTGSPEGAESSSASKTGGSLIVAIKDDPKTFNPLYAG DRMSLTIGKSLFAPLFSINDGKKTFVLAESLTPSADLKSYVLKLRSGLTWHDGQKLTADD VVFSFEQVLDEKQHSYFRSLFVLDGKPIQAKKIDDLTVEFTLPQTTAAFEGALVQLIPVP KHIFAGESDLEKSSKNNQPVGSGPFKFKEYRPGEYVTLERSDSYFAGKAKLDSITYRVAK DSSAAVLALQNGEINMMLIEPQDYNKVKGTGQANVITFPSGGVTTMVFNTNIEIMNKKEV RQAIVHGLDKKELITTGFSSQEFAEPASSIFSPDTLYQQKDLKGYDYNPEKAKELLKAAG AEGLKIRFAYFNGSKAEENMSLYLQQKLKAIGVTVELIPLDGAALGKKALNKDNKEYDMS FGGYSMGFEPDAYKPLYLSSGSYNYSHYKNSDFDALWTKAAVETDPAKRAKLYQSIQELS AEEVTTYPIAYGKSIVAVDARFSGLEEAVPKQVVLFDDYSKIYMK >gi|333604167|gb|AFDH01000112.1| GENE 147 178758 - 179210 446 150 aa, chain - ## HITS:1 COG:BS_yfiV KEGG:ns NR:ns ## COG: BS_yfiV COG1846 # Protein_GI_number: 16077908 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 33 147 46 160 160 62 34.0 4e-10 MKLTDYCVKVGELLRVIDTKHTKIVNQHYSPHNLTAPSINILLLLDKEGAMRVSDIGSAL NMVDSNVSAICSRLENMHLIERFRTKEDQRVVKIQLSPEAEDKMKDIIANVHEFQELFVK NSSQEELEAIVRGLSLLERLLDNVLKEKMK >gi|333604167|gb|AFDH01000112.1| GENE 148 179380 - 180384 1026 334 aa, chain - ## HITS:1 COG:no KEGG:BBR47_06980 NR:ns ## KEGG: BBR47_06980 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 12 326 248 581 586 200 36.0 9e-50 MTKTFEKDWSKTLTSAAKAVHGAVSYTDKKHLTLVDVMGLTGHAFRMNMDPVKVGIESPT SFPGGYILRRNLCNLGFISSMGEAAAPITPEKLEQTIALVQESVDKGYPAIAFDLFVPEF GLIYGYDDEKQLFYAKDAEREGTVTYAKFGEPKIGLLFLVTISESLPHSKYEMLRMALDM IVDHTRGREWNHIFKDRFVTGLAGYDCWIDAIKERRADELGHAYNTAVIADAREYAARFL RELTVKWNAGNSVERYVREAAAEAAAHYGAVADAFSSLREMFPFPQGGALRDGDTAGRAV TLLLKAKEEETKGIAVLEKLLSFMKAYHSEKWVH >gi|333604167|gb|AFDH01000112.1| GENE 149 180422 - 181213 689 263 aa, chain - ## HITS:1 COG:PA0762 KEGG:ns NR:ns ## COG: PA0762 COG1595 # Protein_GI_number: 15595959 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog # Organism: Pseudomonas aeruginosa # 32 109 6 83 193 58 39.0 9e-09 MSPVYAVPGLFVRRREMTPVPDQGPPEPEAPEEHELIDRARRGDQEAFNELVRRHRAQAL GLANRLVEDHSLAEDVVQDALIRAFLHLGTLADAGKFGPWLRRIVRNQALLKLRRGGPFG RERPFSSLPEPSAVRHSSASAGAGWDDVDAILFRLENAAAVEARHRADPAESLMRKAMLE GLRSLLHGLSPRERGIFEAHFFGELPPAEIARLLGTATANVYNSLSRSRAKVRRERIRVS LQDYVRKRAQLGLPARHILAPPP >gi|333604167|gb|AFDH01000112.1| GENE 150 181645 - 183237 1349 530 aa, chain + ## HITS:1 COG:BS_yunI KEGG:ns NR:ns ## COG: BS_yunI COG2508 # Protein_GI_number: 16080295 # Func_class: T Signal transduction mechanisms; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Regulator of polyketide synthase expression # Organism: Bacillus subtilis # 17 516 2 525 531 136 23.0 1e-31 MIYLRGESMTTSFTVKNLLDMPLFRGAEVLAGAQGLSNEIFYVDCMETPDLTGWLRPNEL ILTTGYSFRFEPSMLCRLLDEMHRVGGSAVGIKTKRYLQEVHPEAIELSNRYGIPLFDIP LDVPFMDMTRSIMDQILQRQAYLLKEVHEVNQQFTGMVLNRKFSELVILIGKLLRCEVAI LNREGEVESSTADYNAAAGVENRPVFTGNRIFGTLSLTRKLEDGDHFEKMCLDHAVMALA IEFTIRQAQQLHRSREQELFAAELLSGGVSRQEDLLRHRAKHLGIPYGGFVYVMALRASC PADTDPETVKTLHSRLAEEVNRDSGGHRRLAVEINDRLLLICAADRPETGKQLETARKYK AELEARASRIVGTDAAAMIVRCGIGAVRGQYADLHASCLEARQALAFGEQAADQPEVLHF HDRLVEHLLMDVAGHPLLEQLHGELIQPLLDYDGEAGTELLPTLEAYLKSGSTKQVAEEL FIHRNSVLYRLERIRELLRTDIHDPDIRFRLDLAIRYGQSRKIKRVCPQL >gi|333604167|gb|AFDH01000112.1| GENE 151 183262 - 184026 637 254 aa, chain + ## HITS:1 COG:mlr2047 KEGG:ns NR:ns ## COG: mlr2047 COG1028 # Protein_GI_number: 13471924 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Mesorhizobium loti # 4 253 3 241 242 147 38.0 2e-35 MSTLKDQRVVIIGGSSGIGLAAARQAAEQGAEVIIAGRSAERLKQAEEALKLPARGVSSH EAIQPAGRVRTFRLNNRNEDELQSFFERVGAFDHLFTPGASYVRGPITSDAETAHSCFEG KFWPQYNAVKYALPYLSRSGSVVLMSGAFSQRPLGDGASYAACNGAIESLGKALAVELAP VRVNVVSPGTIVTHFNWEGASREKREESYNAYNDMCLLGRTGNADEVAHTVVYLMTNGYT TGSTLFPDGGYILR >gi|333604167|gb|AFDH01000112.1| GENE 152 184147 - 185910 1772 587 aa, chain - ## HITS:1 COG:BS_mcpA KEGG:ns NR:ns ## COG: BS_mcpA COG0840 # Protein_GI_number: 16080176 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Methyl-accepting chemotaxis protein # Organism: Bacillus subtilis # 200 562 300 661 661 213 36.0 1e-54 MKFKQKLALSFAAVLLLTFVVGAIGLYQLTSVNKVYQSLINDRVEKILIIKDLGTTAAEE TKNVRGYLLTGNDEHFKSYEQDRQTFKADLSKLQANIHQDKSKELAARLSSLEEQYAGIV AEIAAYKKVEDIKNYTRLVEEKCVPMARQLADTAAELEEFQQSQLNQSVQETSQKVSDIK TLLRATLLAALVAGVVLAYLITRMIARPVTLVAQAAKRIAEGDLTGDDVRLKQKDEIGQM AGAFNEMKANLRALLAKINRNAVEVAAASKELSDGSEQAVTGAQQVAESMQDISGTADRQ VNQLRENKQAIEESAQSIQRIAESASITVESSEQAALQAEEGRKLLGETVVQMKQIRTTI EESAAVIHDLGEQSRNIEKITAFIKDIAQQTNLLSLNASIEAARAGEHGKGFAVVAGEVK KLAEQTGEASEQIAKGIQRMVQTVAQSVTAMNRGSAEVEAGTRVMNRTGEAFNGIYRAIG TVTGQVQEVSAATEELSAATEQLLKAEEQLAGLSGDISGHSQSVAAVCEEQLASMEEISA SSDALSHMAKELQDEIQKFKFEGDEPGAASQPNVHYRGHGEQAAAAS >gi|333604167|gb|AFDH01000112.1| GENE 153 186168 - 187322 1407 384 aa, chain + ## HITS:1 COG:no KEGG:LKI_04360 NR:ns ## KEGG: LKI_04360 # Name: not_defined # Def: hypothetical protein # Organism: L.kimchii # Pathway: not_defined # 4 363 3 394 412 232 33.0 2e-59 MNGFLNFMKSKAVIGGLTMILFYQVAFIAIFMSGYSAIPKNIDELKIAIVNEDTQAGKEI AASLQKELPFHITTGASLEQAREELNDRDVHMVIHIPANFTEKLSQQNEKAPMDFMINQS NPATVTSTMQSVVTQITGSLNQQFAVQNTQGILQKLNMPEEQAKQLAAEIPTKLAPNMIN INKVPAGMHNQMAPFFLSMVSYVGAMVFSMMVTGATRAYTPILGRAKAFWYAQGVNALVA FFSPLIGLTIYFLVQGGYEASVFFQVWLVHALELFAAIEFMSIFCYLLKDAAIFANLTLM LFQTISSGAIMTQDMMPALFRWISHISIMYYTVQTDFSLLFGGGKIGENLLGLAGMAIAS LVVGQLAYLFVSPGFKKKALADAS >gi|333604167|gb|AFDH01000112.1| GENE 154 187408 - 187938 535 176 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_0571 NR:ns ## KEGG: GYMC10_0571 # Name: not_defined # Def: transcriptional regulator, PadR-like family # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 176 1 177 192 105 35.0 5e-22 MSLQIFILGILCEGNHHPYDIKKMFKKNNIEDVHKINDGTLYYNFDVLLKKGYIEKREVI REDNRPEKTTYGITPKGREFLEQEIYASFRNFTGVESLYSSTLFLRHADKNKLIFLIEEV IDKMRNRSEQQNQEWESFKNKTPPSVHLIQDYIHNRMKLESEWLVKLLDFVKNGSL >gi|333604167|gb|AFDH01000112.1| GENE 155 188134 - 189348 1538 404 aa, chain + ## HITS:1 COG:YPO0274 KEGG:ns NR:ns ## COG: YPO0274 COG2391 # Protein_GI_number: 16120613 # Func_class: R General function prediction only # Function: Predicted transporter component # Organism: Yersinia pestis # 9 389 11 388 404 315 48.0 1e-85 MQGTIKKIFTHYWSPYIAMGLAGVLSALYFGITKTVWAVTGEFTRLGGHILQLFGVDVSD WAYFKLVGMNGTTLTRTDGWIVWGMFIGALVMILLSNNFKIRIPKQKRRLVQGFAGGIIA GFGARLALGCNLAAFFTGVPQFSLHSWIFIAATAIGTYLGVKVVNTAWWKGKPVLSKGNT AASPSAVKKRIVQPYVGAGIALAYAALIVYFFASGKTMLGAAAIFGAAFGILIERGQICF TSAFRDLWISGRAAMTKAITAGMAISSVATLIIILVYGLEPITKIAAPSTLVGGILFGLG IVLAGGCETGMMYRLMEGQVVFLPVFIGNIIGATALAYAWDHLGVFNLLAKSGSKINLIP LMGPYGALFATLALLAAGFAVAAYWQKNYRFGTGFKKGDTTHVR >gi|333604167|gb|AFDH01000112.1| GENE 156 189338 - 189565 316 75 aa, chain + ## HITS:1 COG:ECs2669 KEGG:ns NR:ns ## COG: ECs2669 COG0425 # Protein_GI_number: 15831923 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted redox protein, regulator of disulfide bond formation # Organism: Escherichia coli O157:H7 # 4 58 7 61 77 67 49.0 9e-12 MSVDYTLDIRGESCPYPVIYTLETLRDMKKGQLLQVIADCPAAFRNVPEEVVKHGYTMAQ EPVRDGQEFTLYIRA >gi|333604167|gb|AFDH01000112.1| GENE 157 189729 - 191129 1120 466 aa, chain + ## HITS:1 COG:no KEGG:CbC4_0731 NR:ns ## KEGG: CbC4_0731 # Name: not_defined # Def: hypothetical protein # Organism: C.botulinum_BKT015925 # Pathway: not_defined # 156 422 315 582 1472 104 28.0 1e-20 MRLVPALIGLTLFDCFTGVSSASASPGQDVSIVVNGAELFPDSRAYIQTESGLTYVPLRS LSEAFGTEVEWSQSTKTATVRKGATLIDLTVGSTLAHIDGREAVLESSAEQENGRVMVPV RFIAEALGIAIAWNADTHTVTLGDTPAPASVFAPGEGNDVQNILNQAFVTQSNGWVYYQN VGDESKLYRMKEDGSESVKISDDPAAQIQVTGGWVYYRLLTQGERTDAGEVYRIRPDGSE RTKLSKEKAGQVYVTGDWIYYNVTAGFGSGPLFKMKLDGSGKQELSQKDEDVMDFVPYQG HIYYKRSIGGLYSIDLNGRNRKTYTKEFVHELRAANGFIYYHKDANQLLKMSVQTGEESV AVDNVPLSRYYVGPDYLVLEKALSFLNRKVYLTDLQGGGEKLRIDNTLVQLNVIGDWIYF MTYETKSSETHRYADIVFSLGRVKKDGSQREIITSKTSNPFPNERL >gi|333604167|gb|AFDH01000112.1| GENE 158 191278 - 191340 84 20 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSSFGGKLIKKIKRVLFNLC >gi|333604167|gb|AFDH01000112.1| GENE 159 191736 - 191813 76 25 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MAAYEELVTRQRTFFHTGQSWESTT >gi|333604167|gb|AFDH01000112.1| GENE 160 191955 - 192974 1115 339 aa, chain - ## HITS:1 COG:BS_yfmJ KEGG:ns NR:ns ## COG: BS_yfmJ COG2130 # Protein_GI_number: 16077812 # Func_class: R General function prediction only # Function: Putative NADP-dependent oxidoreductases # Organism: Bacillus subtilis # 5 335 6 337 339 428 63.0 1e-120 MPMNKQIVLRSRPEGMPTVDHFEFREVPVSDPAEGQVVVRSLYLSVDPYMRGRMNDSKSY VPPYKLNEPISGGIVGEVVSSRSEQFETGDKVLGMLGWQLYNTVDASAVRKVDENLAPLS AYLSVLGLTGMTAYFGLLDIGKPKEGETVVVSGAAGAVGMMVGQIAKLKGARVVGIAGSD EKTAYLEKELGFDAAVNYKTADNLDEAIAKACPDGVDVYYDNVGGRISDAVMKQLNDHAR IPLCGAISSYNSTDGDLGPRIQPQLIKTRSLIQGFVLSDYAARFHEAGADLGKWLSEGKL KYEETIVEGFDNVPKAFLELFKGTNLGKMLVKVSEADGE >gi|333604167|gb|AFDH01000112.1| GENE 161 193142 - 193435 202 97 aa, chain - ## HITS:1 COG:BS_yceK KEGG:ns NR:ns ## COG: BS_yceK COG0640 # Protein_GI_number: 16077366 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus subtilis # 1 97 6 100 100 77 41.0 5e-15 MTIEQLTVEDERRVKIFKALAEVKRIEMIRYLHRHDRSNTCGEIGESVGMDKSNVSYHLK ILYEAGLIKVIRSGQNKTSELRRDVFHQFLPGFLDSL >gi|333604167|gb|AFDH01000112.1| GENE 162 193467 - 193868 372 133 aa, chain - ## HITS:1 COG:BS_ytcD KEGG:ns NR:ns ## COG: BS_ytcD COG1733 # Protein_GI_number: 16079955 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus subtilis # 4 122 3 121 126 185 76.0 2e-47 MTTKKKYNIPVEATLEIIGGKWKCVILCHLTHGKKRTSELKRLMPAITQKMLTQQLRELE EDGVIKRTIHQEIPPRVDYELSEYGWGLQKILDSLCAWGEKHIIKVYGDKSAVLEDSFLN EKTFDKEEESPAS >gi|333604167|gb|AFDH01000112.1| GENE 163 194067 - 195269 1456 400 aa, chain + ## HITS:1 COG:BS_ytbD KEGG:ns NR:ns ## COG: BS_ytbD COG2814 # Protein_GI_number: 16079956 # Func_class: G Carbohydrate transport and metabolism # Function: Arabinose efflux permease # Organism: Bacillus subtilis # 1 392 1 392 396 452 70.0 1e-127 MIADSHKSTLALLALAISAFAIGTTEFISVGLLPLIAEDLQTSLTTAGLTVSMYALGVTL GAPILTSLTSTMTRKTLLLWIMVVFIIGNSLAAGATTIGVLLAARIVSSLAHGVFMSIGS TIAADLVPQHRRASAISIMFTGLTVATITGVPIGTFIGQQWGWRLAFAAIVVVGVVAFIA NSVLIPSTLPKGVRTTFRDQLKLVTNGRLLLMFVITALGYGGTFVVFTFLSPLLHTVTGF AENTVTLLLLVYGVAIAVGNVIGGKAANRKPLPALLVTFLLQAVVLFALAFTAPYKAAGL ITVILMGLFAFMSVAGLQVFVLTLAKRYVPAAVDVASAINIAAFNAGIAIGAYLGGIVTE RMGLIHTTWVGGIMVVAAVVLTGWSLLLEGRNALRENALS >gi|333604167|gb|AFDH01000112.1| GENE 164 195388 - 196242 1064 284 aa, chain - ## HITS:1 COG:lin0535 KEGG:ns NR:ns ## COG: lin0535 COG2199 # Protein_GI_number: 16799610 # Func_class: T Signal transduction mechanisms # Function: FOG: GGDEF domain # Organism: Listeria innocua # 1 284 1 284 284 264 46.0 1e-70 MKVNRSSLLSDIAFLALLVLCNVCVAFTAGDPNRYVENLIFLNLAFFFVVVTYFTTVTAG LILNIVFIFGYGTYILYETVTRGETIGISTYFWLIMTPVLTVVIWLFTTATRQLQAENDD LQKQKARLATLDERTDLKNSIAFRKDASVFAGISTRYNIPLTLLVIKVKYWNEIRPLIGD EQLAEAIIDVSKISQASIRTNDALYLLDKEDATWGLLLFTDRDGVKVVMERIKQSLEEFN TRDFAQKYKVDLSLKMGAVQYQAETIDSPIDFIVQAKKQLEYDV >gi|333604167|gb|AFDH01000112.1| GENE 165 196232 - 198319 2282 695 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_0579 NR:ns ## KEGG: Pjdr2_0579 # Name: not_defined # Def: cellulose synthase subunit B # Organism: Paenibacillus # Pathway: not_defined # 21 691 21 690 690 666 50.0 0 MTMKKWLLFICLLSIFAAQFGQGAAAAPANGEARTYQTAFTESEASLSGAVSSKQKYFEL MDYWNVETVKINLDYQATQLAKELISSVTLSVNGHAFHSFRPVAADNGRQRLSVSVPKEW LKKGSNMLEITGYIRTVDNEVCAPDDAPDHWLSLFTTSSIDVAYTNAELKAAINDFSHRF AGLDTVGAGQSVLTVPDNSDPVELETAVYALSGFAKAKKNADKDIPLLPYRADVLGNKQA VVLVGLYDRLPEGIKGLLSKQDYNTKAVVQLVNKDTQPTLVVTSQNPKLLVQAGRFVANP SLMEQMDSDLKVVEESTDVATPPVAYSTQVTFTETGDEVRGPGHQEKTYFVSLPTNRSIA DAGQITLDFRYAQNLDFNRSLVTVSINGIPIGSKKLTKEMANGDKAVFAIPSNAAVSGNF SVTAAFDLQMVSAACTQNGNQTPWAFLTKDSMINFKTKDRTDMLFNNYPYPFLRDGVYNR VAVVLPEAKDDYTYRSVSNVFNLLGQYASGNTGDVRFYKDTAGSDQLKDSNIIAIGTFID NKLIQENNKNLYFKYDPKGEGILSNEKISIETEYGKRLGTLQLLASPFQAGNGFLAVTGA RAENYYLASKLIANEKAKWKVYGDGVITDKDGSVSAYRFKKEAGEGDQSLVKDVLQRGDV LGFLVAFVLVAALAVLSLILLIRKHLKKRGGRDES >gi|333604167|gb|AFDH01000112.1| GENE 166 198369 - 199622 1341 417 aa, chain - ## HITS:1 COG:lin0533 KEGG:ns NR:ns ## COG: lin0533 COG1215 # Protein_GI_number: 16799608 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases, probably involved in cell wall biogenesis # Organism: Listeria innocua # 1 417 1 416 416 645 75.0 0 MTISDYLMVIAVLCIWSLLLVNVLLIIAGYFYYVQTEREPMPDIPAGEEPFVTIMVPAHN EGKVISQTVEALLAFDYPHDRYEIIVINDNSSDNSAELLAGIQARNPRRNLIIINTDSVT GGKGKSNALNLGFAQSKGELIAIYDADNTPERKALRYLVAEITNDASLGAVIGKFRTRNR DVNLLTRFINIETLSFQWMAQAGRWKLFKLCTIPGTNFIMRRHIVESIGGWDVKAIAEDT EISFRIYMMGYRIKFQPKAVTWEQEPQTVKVWFKQRTRWAKGNIYVIVKNCKLLFHPEAK RIRFDILYLLSIYFLLVTALVTSDVLLVLNALGYVHTTIASFSTFLWLLAVTLFVVGTYV TLTTEKGEMNLSNVWIIMLMYVSYCQMWMAVAAYGLYNYFKDQLFGREVKWYKTERY >gi|333604167|gb|AFDH01000112.1| GENE 167 199633 - 201183 1508 516 aa, chain - ## HITS:1 COG:lin0532 KEGG:ns NR:ns ## COG: lin0532 COG5298 # Protein_GI_number: 16799607 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 8 516 4 499 499 254 33.0 4e-67 MRSIQAYKISLPLLLLLVLLLIPWPHASAAGSQPVKVLLLYDSLAKGTPREGNVTVLQQL LASYRTQVTLSSIDRYKQGTMQAYANVITVVNDGDLRISNQAYLDDLSAYPGAYLHVGYQ LPAQTRDKLSAATEKISRDTAEIAADKRTQANIPVRDIEVLTQTGGSAYGTITLSGSGRK APFSAEAGGTAYVPYFQKGNLSELAMASVLKKWLGIEEDGHAYVVLKEIYPFSDLDLLEE TADRLYGAGIPFTISIRPVFGNTDFPAMQRYAEALKYVQTRNGSILINAPVVLDGVSREG GTLREKMNGFISVLAKDGVAPLGVGTEMYWAYDKEYAKSGLGFFDSAVLFPDVKTLYIDP SDTSKPFASAPYSMPMSFLRQFGAADRSVPAFPMDTAVVYDFFGSKEEMEEAVGTLGSSG IPFADYKSGSHEVKAGDTVVASSRGTVTINGNPVNTEYTPQKISADYEYEKKQQQSLAGA FSVQNRIFIIIIMVSLVVFGGLIVVGYRLYRKKYLK >gi|333604167|gb|AFDH01000112.1| GENE 168 201161 - 202723 1778 520 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_0576 NR:ns ## KEGG: Pjdr2_0576 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 20 511 18 509 511 491 52.0 1e-137 MTTEKSIKERLRLGFMLAGRYISPALLAALGVLLITGFALFVPPYIGVADNGDFFRSIYS EGLYFNLPDYDSQRFGYFVKQYGIYQYFNENGTTIVSSQSLFIKAALLLNQLLFSSVVFD IRFQALLFTLLLTAAVYLLVEALTWKIARKHGYLIALLAIFMFGDTGYTAYFSSFFGESI VYVMMLFVFASWLLLYRKRYNDYALLALFVISTLILTTSKQQNAPVGIIVACMAVVLLWV RKEKLFRLLTAGSLVLLFVSGVATYAMISKEFVNINQYHAMTRGVLMQSANPEDTLKSFE IDKQYAILKGSIFYEPYATVDVNSPMLEKDFYSRYGFASILTYYVTHPDKLSSMLNVAAK DAFTIRPNAMGNYEASAGKPFGTHAGFFSGYSVMKKGLSPKTYGFIVIWIVVLVGLYMPS FLAAFRARDPRLAQRLILIVTMIFIGLAGILVSIIGAGDADLAKHEFLFTVAFDLVTFMA VSDILSRRLMRNHEYAADEADKIRTGTGKGGNALAQHPSL >gi|333604167|gb|AFDH01000112.1| GENE 169 202748 - 203857 1146 369 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_0575 NR:ns ## KEGG: Pjdr2_0575 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 3 369 15 384 384 336 51.0 8e-91 MLGVVLCLILFLTVNRKTEDASPMPAPSGEPAGQNGKIINVQNERQALYAFIKTRMTGPF GVFTNLKETDEAKETATGHEVLSESASLQMREDARSKRKEEFAQHWALARQTFDLKQGFS YRYSPKQQKKYPLNAAVDDLRVIRALAEAAKAFDEPAYAKEAEKYGKRFYETNVKDGRLY DFYDETYGITNKFVTLCYIDLRTLGMLPVPDASKQALLDNMKSLIAKGYLSDAFPFYETR FDYEKNAYTSEGINMVESLLTVLHLAEAGEPAPASIRYIKEHVKAGTLYGRYTKEGTPAT QVQSTAIYAITAMIGSEIGDASLYQDSIQRMNAYQVKDEGSPLNGGFGDAASGQAYSFDN LMALLAYTY >gi|333604167|gb|AFDH01000112.1| GENE 170 204150 - 206060 2142 636 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_0337 NR:ns ## KEGG: GYMC10_0337 # Name: not_defined # Def: glycoside hydrolase, family 20, catalytic core # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 636 1 638 638 951 71.0 0 MKLRFEGDLTGLQPGLQVLLQELSVTEAEDGLKVAVGPSSGDLEVGLEPGSAYIRYGQKH QFYRALGLLVQHGSGGESFSIREKQHLDVVGPMFDLSRNGVLTLESFKFMIRKMALMGMN TVMLYLEDTYEIEGQPYFGYMRGRYTQAELKEIDDYADQFGIEAFPSIQTLAHLEEFLKW EPVKEYKDTKGALLVGYDKTDELVEKMIEAASAPFRSRKIHIGMDEAEELGRGKYLDKNG FASRFDIMVTHLDKVLEITRRRGLKAMMWSDMFLKLASGTGSEHYNKDTQIPAEMAARIP KDVDLVYWDYVHTEEADYESQIAQHAPLGCNLVYAGGVWVFNTFGVNYGLSLKATDAALR VNKKHGIREAYATMWGDDGMESNPYIALLGLQFYAEHAYTEGSPDWAVLAERVKFCTGLE ADAYLQMKYLDETPGSEPDNRKQSNPSKFLLYQDVLLGLFDKQIEGLEMSAHYAKVEQDI RSRRDPAAALDYIFDVPEKLAGVLKRKSEIGIELKSAYDAGDKSTLKRIAEDVLPEIAEA VRALRAAHRSQWLSMFKPFGWEIIDIRYGGVLSRLDTASVRLLDYAEGRIGRIEELEQER LLYSTSNRFTNKGVGWCSFYYRMASPNVFFHVMNPF >gi|333604167|gb|AFDH01000112.1| GENE 171 206379 - 207185 439 268 aa, chain - ## HITS:1 COG:no KEGG:Clos_2756 NR:ns ## KEGG: Clos_2756 # Name: not_defined # Def: hypothetical protein # Organism: A.oremlandii # Pathway: not_defined # 4 268 93 347 347 234 47.0 4e-60 MDSFRWQNGVFNGEMEFYTFKYVNGKRVYTGTWHYMYGMQTPDDTSGEIAGQKFSSGGGN SLEYTAMTQEQEDYLPRYNHAGVKQMEFYDPFVDYNNHYKDDLKLLDQIGKDKYVEMALS FDKSYSLDEVRTMMSAGPNPVWYWANSQKEEARKANSYQRYTEKGKNGEDVVTENFPSPI YEDNAIGFHAVNHYGEQLPDPEQFFIPALKKARMQSDYDIMAGSDKILSKDDIRILGVVV TGEPETLKLLRNRSYIKASSLGVVTDKY >gi|333604167|gb|AFDH01000112.1| GENE 172 207421 - 207933 368 170 aa, chain - ## HITS:1 COG:BS_yhdM KEGG:ns NR:ns ## COG: BS_yhdM COG1595 # Protein_GI_number: 16078017 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog # Organism: Bacillus subtilis # 3 158 4 154 163 64 26.0 1e-10 MEDELVRMFYVKGRVILKILIKMGAGKEDAEDILQDTVLKAFTYIDSIPEEQMTAWLYRV AVNSYYTLHTKNKRHMTFAAQQFTECLAGEEKVEQHILRNEHRQEIISILDSLKETHRTL LVMKYGMELTYREISELLFLSEHQVRTYMYRARNQFKARWELNHEYDGER >gi|333604167|gb|AFDH01000112.1| GENE 173 208165 - 208842 680 225 aa, chain + ## HITS:1 COG:CAC3220 KEGG:ns NR:ns ## COG: CAC3220 COG0745 # Protein_GI_number: 15896467 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Clostridium acetobutylicum # 1 224 5 227 228 183 42.0 2e-46 MKKVLIIEDEAPIARILQAYLEREPYSVKWNPGDGGMLDLFLTWKPDLVLLDLMLPDLDG LDVLKQIRQHGSCPVIILTARGSVPDRLQGLQQGADDYIPKPFDPDEVIARVQAVLRRSA YMADSRTVRLGSLVIDFTACTVHLHDKLLPLYPRDWSLLAFLIKHPNQCFSREQLLDRVW GMDYEGGDRAVDTTIKRLRQCLQDWPPSEGEILTIRGLGYTLHVH >gi|333604167|gb|AFDH01000112.1| GENE 174 208832 - 210331 1287 499 aa, chain + ## HITS:1 COG:BH2263 KEGG:ns NR:ns ## COG: BH2263 COG0642 # Protein_GI_number: 15614826 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Bacillus halodurans # 172 494 133 456 473 140 31.0 8e-33 MFTKPQTQPQTMPMLRFWTWRYALILFITLLIVSLIVGVWITSNANRQSYEVLQARAEQL ADSYARVMTLYQLSSPAQTQGSIRTEVRADPAAKVSPSTTSVSSISPIEVARPLGDEMMQ IVNRQGNLDTYSSSGAQYNNAERPGGYAAVLKGQTDRESFSLNDRTWLRVGVPLMDRGSV IGALYLSTPTPDNAEQTRQTYVIAVLITLGLALGGWTAIYLLLRKLTRPLRQLANAALQV ADGHYAPVLPVAPMKERELMQLFTSFNEMTSRLRQLEQMRTDLLAGVSHELRTPLTSIRG MVQAVHGKVVTGGEANEFLEISLEETKRMQKMIDDMLEFSSLEAGAVHSERTTVDLSRLV THLTQQLSSLPVCANVRVETVLPAQTIRLLADQGQLKQMLMNLIMNSTAAGSTSITVHAY PLGSMIHVDVKDNGSGIRESEVPHIFERYYRGDSRRKKKQGLGLGLPLSRLLAQANGGEL ALQETSPKGTVFKLTLPAV >gi|333604167|gb|AFDH01000112.1| GENE 175 210592 - 211350 602 252 aa, chain + ## HITS:1 COG:no KEGG:BBR47_56280 NR:ns ## KEGG: BBR47_56280 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 1 232 1 193 231 65 32.0 2e-09 MKKKLAMGTMALAVFAMAGSAYAAQPEASTPAFTKATTSISAVKGGTAVFKEVKLPQGVS FEEFAKKQGLTAEQLIEKLKKDGTLDHLAEAKGQTVEEAAEFLKKNGLFAASHNALAIST FSPAEQGDGKTDGTVRNTIKAVLLEKNVTNGNGPTAETVEDITIPPSLSFEEFAKAQGLT VDELIARLKEDGTLGAIAKANGQSVEEAIEFVKKNGLFAAAEKASLFSTIISSVDGGTEA RGAVQEIKLDSK >gi|333604167|gb|AFDH01000112.1| GENE 176 211542 - 215144 3409 1200 aa, chain - ## HITS:1 COG:no KEGG:MTES_2849 NR:ns ## KEGG: MTES_2849 # Name: not_defined # Def: hypothetical protein # Organism: M.testaceum # Pathway: not_defined # 62 1013 56 929 951 414 34.0 1e-113 MYRRTKTSYLAVILCFSLVLTLLGAGARQARAEDPYDGMRLKLLHLILGDDQYSLPVSDP VLRSKLAKMDSAVSSCAAASAPCSSGKGVWDILNRGADRTYLWVDLPFTSTDSYTKSGDI TNSYNRLLSMITVYYTPGSSFYGNPALKNDVLSALDWLYAQKYNTTVAPYGNWYHWQIGV PQALTKIGLLMRDDLTAAQLTNYMSAVNRFIPDSAARTVSGSPVMTGANLLDQAISVAYR GILVKDAAKITNARDALGSVFAYVNPASAPNTTARDGFYQDGSFIQHAAMPYIGGYGTAL LNDIGILFYALEGTQWDVTDAGKWNAYKWVFDSVEPFIYDGNVMDMVRGRNIAFGPAPGN ADTGPVLTGKGLIASIGYLLLTAPSTNEQMGEKYPDNPKQAIQGMLKYWLSKDTSNQILD ASSMYQYLQLKQIVNSAVPSRGEKTGTSIYANQDRAVHLRPGFGFGLSLSSNRVDKYESG NKNNVQGWYTGDGMTYLYNADSGQYDNFWPTVNRYRLPGTTVDTQKRTNSSNWTSYLSPN RWAGGAELLGTFGAAGMDLKSPGDIGSGGAILTPSNLTAKKSWFMFDDEIVSLGAGITNS GQTGSGWDGSPRKVETIVENRRITGGNEFTVNGTAQPAASGWTAALPGTNWAYLQGNTDG ESSSVGYYFPGSAALKASRETRTGSWNEINEATPDVYNVMGTEDSYVRSNEGNHGAEPTL VVKNDANGYARETYLKFDLTNFVPGQVQFDSAKVTLVPTVIGPTAKAVQHTAEWVPGNSW TETGLLWTNKPSSNPFSPVRQWSGMQAGTPVTIDVSQPLQNALANNQKVFSLRIYASSPA DPDGTVAYASRENPNSSYRPKLVLSGYKEIKSADYLALWLDHGVNPSNASYSYVTLPNRG RAQVQSYAANPDIAILENTTAAQAVKEKTLNLVAANFWQDGMKTVKADGADFLTVDKKAS VLVKESADGLDVSVSDPTQQNSSKIQVEINRSYSGAVFMDPGIQVTQYSPTLKLSVDVSG SYGRTFHAKFSNAAATLLSSKGDATVRDGSYAGTNYGTSGFMEVKNEAASYNRSALVQFD LSSYTGTAGRAAIVLTPIDAPAKAVTHQARLVSAQWDENTLTWSTKPVPGLPLAEWKVPA AGSPVMIDVSEAVRRALASGDKRIAVEIRSLTNGSDTYASYASKENAAAASRPVLKITAP >gi|333604167|gb|AFDH01000112.1| GENE 177 215457 - 216944 1839 495 aa, chain + ## HITS:1 COG:BS_yclF KEGG:ns NR:ns ## COG: BS_yclF COG3104 # Protein_GI_number: 16077435 # Func_class: E Amino acid transport and metabolism # Function: Dipeptide/tripeptide permease # Organism: Bacillus subtilis # 1 494 1 491 492 542 65.0 1e-154 MPAIDKQKIVESVPQKGFFGHPKGLFTLFFTEFWERFSYYGMKAILVFYMYYEVTRGGLG FPEGTALAIVSIYGSLVYMSGIIGGWLADRLLGTSRAVFYGGILIMFGHLVLAVPGNVAL FFVSMVLIVLGTGLLKPNVSSVVGEIYSEQDTRRDSGFSIFYMGINLGGFLSPLIVGTVG MKNFHLGFGLAAIGMFLGLVLFVLTKKKNLGLAGTIVANPMSPAEKKKVFTIMGIGIVVV AILVAIAIPAGLLTFSTFIKLIGVLGLLIPTIYFIVMYRSPKTTAVERSRLVAYIPLFIA SIMFWAIQEQGSTILANYADKRTQLDFMGLNISPAWFQSLNPLFIIVFAPVFAWLWMRLG DRQPTIPKKFSLGLLFAGLSFLVILLPAYFGGDALVNPLWLVLSYFIVVVGELCLSPVGL SATTKLAPAAFTAQTMSLWFLSNAAAQAINAQIVKFYTPETEMLYFGVIGGAAIVLSLLL YVLSPKIQGYMKGVK >gi|333604167|gb|AFDH01000112.1| GENE 178 217190 - 217459 187 89 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_2842 NR:ns ## KEGG: Pjdr2_2842 # Name: not_defined # Def: transcriptional regulator, ArsR family # Organism: Paenibacillus # Pathway: not_defined # 6 87 11 92 93 88 53.0 9e-17 MTDDCAVKVYKALGEITRLQIVKTLVKRRELACQEMAAQLRITAASTLTHHLKPLLECGV IAVRKEGTFRYYHVQKHVLERYAPYLLHE >gi|333604167|gb|AFDH01000112.1| GENE 179 217528 - 218643 1096 371 aa, chain + ## HITS:1 COG:YPO2379 KEGG:ns NR:ns ## COG: YPO2379 COG1902 # Protein_GI_number: 16122602 # Func_class: C Energy production and conversion # Function: NADH:flavin oxidoreductases, Old Yellow Enzyme family # Organism: Yersinia pestis # 25 368 4 353 365 244 41.0 3e-64 MAEDKEIFEATGISTWGKLQDGPESKLFEPAKVGAWSLQTRTAMAPMTRCFANDKTGVVG EDVARYYRKRAADGVGLIISEGIVVSPRGKGNPGVPGLYTREQIEGWKKVTEGVHAEGGT IIAQIWHVGRLSHHELAGDLPPQAPSAIRAEGNVARLRKPYDTPEEMTLTDIQELVGQFA QAARNAIEAGFDGVEIHGAHGYLIDQFNSDASNRRTDRYGGDLAQRLTLTKEVLKAVIDA IGSDRTLIRFSALKVDDPNYMWPDPDSAIRTFTEAFREAGATMIHPSTMQFTRVLADGKT MHQLVRKYWDGVIVGVGTLDSQTAEQALAEGTIDLAAFGRPLLSNPDFIHRLKNGEPLEE YDAKQHLGVLV >gi|333604167|gb|AFDH01000112.1| GENE 180 218855 - 219673 196 272 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 7 251 4 242 242 80 27 9e-14 MGRVQGKVALVTGGASGIGLSAAALLAREGAKVVIGDFNAEGAREAAEKIKSEGGEAAGV FLDASNEQSIRDAVDFTVEQYGALNVLFNNVGLTNLKKDVDVVNMDLEEWDRLMNVNTKS VLLGSRFAIPHMIKAGGGSIINTASMAAFASDAVRSAYGASKAAVVNLTRYIATQYGKDN IRCNGVAPGLILTPAAKNNMPQPVLDIFAKYNALPYHGEADDIGYTVLFLASDESKFITG QTIQVEGGHYLANPTVPDFKAFMAQAAGAPQS >gi|333604167|gb|AFDH01000112.1| GENE 181 219696 - 220127 496 143 aa, chain - ## HITS:1 COG:TVN1246 KEGG:ns NR:ns ## COG: TVN1246 COG1846 # Protein_GI_number: 13542077 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Thermoplasma volcanium # 24 143 28 152 154 57 28.0 7e-09 MDKNDIFKLIHTVELFTNEAIIRWTKSFEPNIGISPIITLSELKQNGPQKQSVLASKLGY TPGAMTNIAGRLTKLGLAERRYNENDRRNVFLAITDQGITVLREAQQKGKELRIELFQVL NEEEIQQFLSIYEKLLKNIKEQE >gi|333604167|gb|AFDH01000112.1| GENE 182 220202 - 220327 61 41 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRRLGELENDIGRVAVFLASEDSAYITGQTIMVDGGATKLR >gi|333604167|gb|AFDH01000112.1| GENE 183 220657 - 222087 887 476 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|145634045|ref|ZP_01789756.1| 50S ribosomal protein L21 [Haemophilus influenzae PittAA] # 5 441 3 445 456 346 40 7e-94 MIDFLQGMINLLNDLLWSKLLIVLLIGIGLYFTYRSKFMQFRMIREMLRVLFESKSGSGD NISPFQAFCISMAARVGTGNITGVAIAVALGGPGAVFWMWVIALIGSASSFVESTLAQVY KIKDKNGFRGGPAYYMQTGLKKRWMGALFAVLITISFGLVFNAVQSNTITIAFENSFGTD RLTVGIIMTLILGAIIFGGVKRIAKMSEYIVIVLAVLYIGVAVFVVLMNITKMPEVLALI VKNAFGIEQIAGGSLGAALLQGVKRGLFSNEAGMGSAPNAAATATTSHPAKQGLIQSFGV LTDTLIICTSTAFIVLLSGAYTDPSLNGIELTQAALSVHIGSWASGFLAIMVFLFAFSTL LGNYYYGETNIEFLHSNKAWVRLYRIAVLAMVIFGSVAKVQVVWDLADLFMGLMVVVNLI AITWLSKIAFAVLNDYVKQKKAGKDPVFTKDRVPGLEEIECWESAPAASGSDQARP >gi|333604167|gb|AFDH01000112.1| GENE 184 222240 - 222359 78 39 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVLTWLLFTLFLAAESAEAKMNVYSPRQVCNDSDTRSSK >gi|333604167|gb|AFDH01000112.1| GENE 185 222493 - 223386 569 297 aa, chain - ## HITS:1 COG:BS_yxjB KEGG:ns NR:ns ## COG: BS_yxjB COG0500 # Protein_GI_number: 16080952 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Bacillus subtilis # 19 294 8 280 282 225 44.0 9e-59 MSTQRNRNEAAQLLAAHETIFSCPVCGGQMTILEGKSLRCGVGHNFDLAREGYLNLLPQA VKTKYGKNLFAARKTVNENGLFDPVRDYIGERITEAVLPDKRHRKIRLLDAGCGEGSLLS GIRKRLSGRTGADLLAVGMDLAKEGVRLASKGDAGALWCAADLANAPFKTAGFDVILNIL SPSNYAEFRRVLDEDGLLIKVVPEENYLREIRQMLYAGTDREFFTSGPAVERFRERFRIL DSRRLRYSWRFGPELLEPLLSMTPLAWGARDERLREASAMAMDEVTVDVTVLWGKPL >gi|333604167|gb|AFDH01000112.1| GENE 186 223631 - 224095 363 154 aa, chain + ## HITS:1 COG:BH2061 KEGG:ns NR:ns ## COG: BH2061 COG1846 # Protein_GI_number: 15614624 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus halodurans # 1 154 1 149 149 150 54.0 1e-36 MEKNRTSQTNNRTGDNSGGRSLGRLILQLHRLERRPQTFGSAGPLTPSEIHTIEAIGTEG GILMSELAGRLEITKGAVTQLIVRLEAKDLVARSPHPEDSRGTLISLTGKGKDAHAAHEE VHRAFYNQLQEQLTEQEIEVFDTCIEKLITFLKK >gi|333604167|gb|AFDH01000112.1| GENE 187 224179 - 225633 1309 484 aa, chain + ## HITS:1 COG:CAC3668 KEGG:ns NR:ns ## COG: CAC3668 COG0477 # Protein_GI_number: 15896900 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Clostridium acetobutylicum # 15 418 14 414 486 204 30.0 5e-52 MQAVGSRTKELRPSLMVTAICLGAFISHFTAGIVNVSLPQFAAIFGTTLGTAQWITTGYL LVIASLLPVMGKLGDRYGFRLIHNLGYILFGISSVLVAFSPNIGSLLGFRIVQAVGAAMF QATNMALITQHLPKQNRGRALGTVNTAVALGAMSGPIAGGVVAEWLNWHWLFLIHVPVAA LATLLAFRFIPPAPAVDKQPSAPFDTMGGLMFMAIISSVIWTISGGSSRGWLSPVTAAVL ASAALLLAGFLIWERRQANPFIPVRAFRIPALSAGLVISCVAFVLANSFLVTLPFYLSGV SGMSPSAAGAVMTAYPILLAVTGPFAGHLSDRFGSGLLVLLGLLAMGGGAAVFSLGLGVL PMAGLVALLALVGLGMGLITSPNNSTILHHAPKEHVGSIGGMIALTRNLGMVVGAALGLG VVQGAAQSASSEPDRLLGALSSVFEINVWLCAGAIVLLGLSFYLERRRCVQPDPVRSAQP KTHP >gi|333604167|gb|AFDH01000112.1| GENE 188 225644 - 227167 909 507 aa, chain - ## HITS:1 COG:PA3509 KEGG:ns NR:ns ## COG: PA3509 COG0596 # Protein_GI_number: 15598705 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Pseudomonas aeruginosa # 17 250 34 272 289 78 30.0 3e-14 MHVEDGATVHDNKYPPEEGNGQTLVFLHGLGLDRTIWNGLIPYFAAHYRIVLYDLPGHGL NTELEENSLDWDFVTADLRRVLKALEITSVHLVGHGIGANAAVQFCRSYPECVDRLVLIS LPVKIPADLIRRKISERKRLIKEGVDGLAAELAAFKTSLPVHTSAFQVVREAYRRMNPDV YVGFMELFMEGDGWKELKFIAHRTLVLAGEYDPIYVTAASLAVGVLPSASFLIVPGAANM PFVEQPGTTALWIERFLHRKDSRPLVDEPLVRELRDTLQLFLDEGEKQAAIAQVLKIDLL GSFRVFLNGREMVDGWNRRYAKSLLVYMIFHPTATREELCDALFPQISGKAALRNLKVYL NHFKNMLQSFEGGSSIVSVDREYVRLLCFLRCDLLDFLKELEEIRTIDENRRYEPAGRLL ARLPDPLMPGLYDEWFVEKKNWLEMEVADLASWMAEKEELRGSRQRAEAYRQMAARFLFD REPEYREGAAVNGRRGKAAQERRRKNG >gi|333604167|gb|AFDH01000112.1| GENE 189 227434 - 228888 1226 484 aa, chain + ## HITS:1 COG:BS_yvpB KEGG:ns NR:ns ## COG: BS_yvpB COG4990 # Protein_GI_number: 16080547 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 257 478 43 246 250 158 40.0 3e-38 MRKHTRPRKGSKRIGWVLLLSVSVQVLLPIQPLFAAKSEKEIVLRIDSSLASIDRELVPI SPEDATAVPFLEQDTTFVPLRFVSEALGAKVEWEQATQTVTMATYDRQILFAVGSRQITV NGKDHPLSVHPILRNNVTFVPLRSIAESLGSHVDYEDGFIRISGRRTTASSSGPVPDAPI DKNTALKEGMSYRVYQHANFLDGFATRQEAVSFAKQYANATVKNRKDAVVWDSFPPYRIY QSDKFLAYYDSYADAISHAKKYANSFVAYKTAAKPVWTFGGPSKQPVYINVPLIRQLPEL PRGCEVTALASLLQFAGVPVDKMTLAAEIRKDPTPYSEKNGVISFGSPHRGFVGDMYSFN NPGFGVYHGPVYELAEHYLPERVVDLTGTEFEDVLHFVGTGTPVWIISNVTFRKLEPYHF QTWMTPDGPIWLTKKEHSVVIVGYDENYIYIRDPHNKTGRVAKQPFKEAWEQMGRQAISL LPEV >gi|333604167|gb|AFDH01000112.1| GENE 190 228936 - 230336 1262 466 aa, chain + ## HITS:1 COG:BH1603 KEGG:ns NR:ns ## COG: BH1603 COG2866 # Protein_GI_number: 15614166 # Func_class: E Amino acid transport and metabolism # Function: Predicted carboxypeptidase # Organism: Bacillus halodurans # 39 327 67 346 355 160 31.0 5e-39 MPKKMRGMLLVVFALVPFLFAAAAHAAETTDIVNPNQTYTYEQMTEDIRQLAKSYPELIE YKSIGKTRYGRDIWAVRLGTGDAKVLINASHHAREWMTTNLVMNMIDQYAQLYVRNGAMN GRALQSVLNNTSIWFVPMVNPDGVTLQQKGVSAFPSEARAGLLAMNEKSSDFSRWKANAE GIDLNRQYPAEWKSIRNDSGRPYYKNFKGDEPLQTAETKAMVAFTKEVDPDMELSYHSSG SILYWNFHTLDKNLERDRKIMSQVAAMTGYTPVKPESNPSGGGFTDWFIQSLGRPGLTPE IGRYAGEGSLPLSEFPRIWNENRDLGLFVAQQGFELWKERIPVEYKTFDLILTEPLPLYS EADSRNKTGASLTAQPLKADARLGNWFRVNTWLGKSWVHVNKPLLGKIEVKESKIELTED TRMYREPRQSSGILSELSPQTVTAFEQMEDWYHIRTWLGDAWVQVK >gi|333604167|gb|AFDH01000112.1| GENE 191 230401 - 230964 569 187 aa, chain - ## HITS:1 COG:AGc3054 KEGG:ns NR:ns ## COG: AGc3054 COG4420 # Protein_GI_number: 15888967 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 29 184 61 216 217 119 41.0 4e-27 MEKKPYFQWKKEPEDASKIQGFDIELNRESTKRIDRLVDHYEKSILSHLDEEYVKKTRWS DRIADRIAFFGGSWKFIIYFALFLAVWITWNTLPFTPLHFDQAPYILLNLCLSFVAAFQA PVIMMSQNRQAARDKHESVIDFAINYKAEQEIDAMQSHLHRIENELIEVKQLLTALASQI DNGDGIE >gi|333604167|gb|AFDH01000112.1| GENE 192 231007 - 231123 96 38 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGSWKSVEPEPDSSMEEVMSRPRAMKIWLPRVFDSSQT >gi|333604167|gb|AFDH01000112.1| GENE 193 231459 - 232520 934 353 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15900201|ref|NP_344805.1| hypothetical protein SP_0267 [Streptococcus pneumoniae TIGR4] # 1 347 2 349 349 364 52 2e-99 MEIGISTFVETTPDVHTGEVISHAQRLREVVEEIVLADRVGLDVYGVGEHHRKDYAASSP AIVLAAAAPQTSRIRLTSAVTVLSSADPVRVFQDFATLDGISGGRAEIMAGRGSFIESFP LFGYDLDHYNELFDEKLELLLKIRASEQVTWQGGHRPAIDNLGVYPRPVQNPLPVWIGSG GNQESVVRAGLLGLPLVLAIIGGSPVQFAPLVQLYKKAAAHAGHDASKLPVASHSHGFIA ETTELAADKFFPSTQAVMNVLGRERGWGPYDRSSFDSARSFNGALYVGDPDTVARKIVHL RKNVGITRFLLHVPVGTMPHDEVMRAIELLGTEVAPRVREEVAAWEAEGAERA >gi|333604167|gb|AFDH01000112.1| GENE 194 232575 - 233081 409 168 aa, chain - ## HITS:1 COG:no KEGG:PPE_01643 NR:ns ## KEGG: PPE_01643 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 1 165 1 165 172 206 59.0 4e-52 MNKEQFDEVFELMEASFPDTEIRTCEGQRALLAHPAYRLNVSRNEDGEILAFMGVWEFKA FRFVEHIAVNPKQRGGGIGKKLMTAYTSGSSTPVILEVEPANDTDSKRRIEFYERLGFHL NAFDYFQPPLREGQPELALQIMSYPDPISEEEFQPYKKLLMAEVYKQA >gi|333604167|gb|AFDH01000112.1| GENE 195 233250 - 233591 179 113 aa, chain - ## HITS:1 COG:PA0128 KEGG:ns NR:ns ## COG: PA0128 COG2824 # Protein_GI_number: 15595326 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism # Organism: Pseudomonas aeruginosa # 1 113 1 113 113 168 73.0 2e-42 MSNLPNCPACNSEYTYEDGNLLVCPECAHEWNVDAEPGNGEEEKVVKDANGNILKDGDSV SVIKDLKVKGSSFVLKIGTKVKNIRLVDGDHDIDCKIDGFGAMKLKSEFVKKI >gi|333604167|gb|AFDH01000112.1| GENE 196 234002 - 235399 1577 465 aa, chain - ## HITS:1 COG:CAC0205 KEGG:ns NR:ns ## COG: CAC0205 COG1409 # Protein_GI_number: 15893498 # Func_class: R General function prediction only # Function: Predicted phosphohydrolases # Organism: Clostridium acetobutylicum # 16 463 11 457 652 184 31.0 4e-46 MYKFSKSKWLVVPMAVFMAVSVVLPGAGAGALGSSAAAAAGSKAPTALALTFNGDAKTSQ GFAWYTDPAVTGTKLQVVESSLVTGGVWPSSGVISFEGSSAPIQVYQSSSDKSAGKKTAY ADHKVTATGLKPGTEYTYRAGDGQEGNWSETGTFKTEEQSGGAFTFLYTTDPQGTTEREY ATWNHTLEEAVKKFPASRFITVTGDLVDNGDIENQWFWLLGKPQAILKKMPLVPALGNHE SKSNNNFWYHFNLPNTSNTGAKPDGSVYAFDYGSARFLVINTEYNEAKGTDAVYRKQEEW LRAEAAKTDKKWKIVLFHKSPYSVANHSSDSDVLFFRKKLAALFDEIGVDVVLSGHDHTY TRTYPMYNNVPQKDTAVDKDGNLINPKGTLYLVSNAAGDKRYTPKSGPFPYAFKYGQPGK EMFTGVTVANDKITFQVYTTTETGATALYDQFGIAKSDTKPSPVR >gi|333604167|gb|AFDH01000112.1| GENE 197 235602 - 236738 863 378 aa, chain + ## HITS:1 COG:CAC3468 KEGG:ns NR:ns ## COG: CAC3468 COG0322 # Protein_GI_number: 15896707 # Func_class: L Replication, recombination and repair # Function: Nuclease subunit of the excinuclease complex # Organism: Clostridium acetobutylicum # 1 365 1 357 373 277 40.0 3e-74 MNLAEKVKALPLTPGVYLMKDRLGHIIYVGKAKSLKKRVQTYFQQSKAHSPKVKRLISNI RDFEVRLTDTEFEAFMLECRLIKQLKPLYNKKMKNPLAYTYLVIRCSREGRRRIDITNDP AGQEGDLFFGPYTSRSTVEKAVQGLQESYRILCSSPYAKHSPCLNHSLGLCLGMCTGSED ALSAYNSVLDKIITALNGNHPAVLEDLEQRMIEAAEKHNFEAAAKYRDLMKTLGSLIHKE KVIGFAEEGRNIVILEPVNGREAKLILVKGNRIVRDTKVEAPDTDRNGPAAPHTLHRRIR SAILDTFRLEEPLSPRPKISRHDIDEAQILYSFLQGSARSYLIVPEHWLIPGHEDELGEA VEGLIAGYVCAQNGAGDL >gi|333604167|gb|AFDH01000112.1| GENE 198 237675 - 237779 91 34 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MMFDEPEKFNEELLQFLEQARIPDPVSPGAFRQE >gi|333604167|gb|AFDH01000112.1| GENE 199 237891 - 239123 1055 410 aa, chain - ## HITS:1 COG:alr2279_3 KEGG:ns NR:ns ## COG: alr2279_3 COG0642 # Protein_GI_number: 17229771 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Nostoc sp. PCC 7120 # 163 407 2 251 260 224 44.0 3e-58 MLRGIRMEYPIRILLVDDRPEDFLTIQALLVDTPYQLIRASSGMEALKFLLESEYALIIM DVLMPDMNGFETAERIKRRKKSEDIPIIFLTALTPEVEDYMKAYTAGGIDYLTKPFHSGV LRSKIEGFVRLYKARKELQIKTSELQKQTLELEDANRVLTQLKETAEVASRIKSGFLAMM SHEIRTPLNGIIALSDILMASDLKRDDAEMAEIIHTSGHALLSVINHILDFTKIESGKME LDYEPFNLTVCLKETMDLFRALARERNLLLETHIEPGIPEILIGDSNRLRQVLNNLIGNA VKFTETGSVKVKVSQKSVDDKLITLEFIVEDTGIGIPADKMNHLFQPFTQIDATISRKFG GTGLGLSICKTLVNLMGGTIYARSNVEKGAVFVFTIQTGIPVGTLNSPQH >gi|333604167|gb|AFDH01000112.1| GENE 200 239148 - 242561 3315 1137 aa, chain - ## HITS:1 COG:alr1883_5 KEGG:ns NR:ns ## COG: alr1883_5 COG0784 # Protein_GI_number: 17229375 # Func_class: T Signal transduction mechanisms # Function: FOG: CheY-like receiver # Organism: Nostoc sp. PCC 7120 # 750 1135 2 387 389 407 51.0 1e-113 MNIKGKVWLGTAVSILVIGGLTAMACIFLDGVFLALSLILGLIGLATGVYLITGIHRGIN KGMHRVSQIVGDIAQGTVNPSDRSAEAGDEFGQLAQSFRSLAVDLYTKTEEERILRLEAE EQAWINVHVTEMAILLQGSVQIATASRIFIGKLASCVQAAYGALYVQKDGLLQFAAGYAY DDTAAERRQPIALGSGLVGQSALDKKTILLHDLPDGYVKVHSALGDTKPAALIIVPVCYE DEVVAVIELASLRDFTPKERQLIDLTTANMGILLNTLADVVRIGELLKETQLQKEELEAQ TEELQSQTEELQAQTEELQMQAEELESQTEELQAQTEELQMQADSLHTSNERLQEEMKLT ELQKEEIKQQADELKAQAEELFESNKQLQEQMELTELQKTEISEQADELKEQAEELLASN ENLKQQVELTERQKIEIKEQADEIFMAAQYKSEFLANVSHELRTPLNSLLILSQILAENK EGNLHSRQLEYIHTIFSAGKDLLTLIDEILDLAKLEVGKMTAVVEPTYLKDVSSHLYRHF EQQAKEKNIHFDIHSDRRLPESILTDGHRLQQILNNLLSNALKFTEKGAVTLSIHGASAP TGREGQAAAEEIVFSVTDTGIGIPASKLESIFEAFQQADGTTSRKYGGTGLGLTICRELA ALLGGRIEVSSAEGEGSTFSLHLPAAQPGTAVSQAAAASDTMSAASEQAKRGKSSFQESF VPDISISNPKLLQLAEMEDDRDNLQPGDTLLLIIEEDAEFASTLLNLARQRNFKAIVASQ GDQGLALAHAYKPDAILLDIQLPVLDGWSIISRLKGRPELRHIPIHVISTAEENQQGLAM GALAFWKKPNDVHELEAAFLQIESYIRRRTKSLLIVEDNPVLRSSVVAFIAHPDVNIVAV ATGREALEQLASHHFDCMVLDLGLSDISGFDLLEQVKTNRKLQTLPVIIFTGKELSKQDE QRLHHYAESIVIKNVRSMERLYDETALYLHRKHADLPADKQELIEKLHNPEAAFQDKNIL LVDDDMRNIFALSSVLEGYNMNIQFAQNGKEALIILRNHPEVDLVFMDIMMPEMDGYETM REIRKMPEFEKLVIIALTARAMDEDRVKCLQAGASDYISKPINTTQLVSMLKTWLIT >gi|333604167|gb|AFDH01000112.1| GENE 201 242875 - 243495 280 206 aa, chain - ## HITS:1 COG:no KEGG:PPE_04804 NR:ns ## KEGG: PPE_04804 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 1 201 9 210 212 273 67.0 4e-72 MTLWLLMVSAQIGAAEGTTRTNPVNSSLLDSLRQGGYILFVRHGEATIGEDQPNLIFRDC STQRNLSEAGRAQALLFGKTLRSLQIPVQSPVAASPFCRTRESAEVAFGKEQVELDPFWV RIYKLSSPVSATEKENTLAALTSVLEKVPLPGTNRVILAHSFPKGIGLGEIPYMGTVVVK PKGEGNGYEIVGKFSLNELENSLREQ >gi|333604167|gb|AFDH01000112.1| GENE 202 243644 - 244234 349 196 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|304408012|ref|ZP_07389662.1| ## NR: gi|304408012|ref|ZP_07389662.1| Peptidase S24/S26A/S26B, conserved region [Paenibacillus curdlanolyticus YK9] Peptidase S24/S26A/S26B, conserved region [Paenibacillus curdlanolyticus YK9] # 5 192 6 217 217 105 33.0 1e-21 MKQWLFAALLLGSLAACSEKTIEDKVTKESIAEVSAGNHTVVNPLSDAMDRGQHELEKNV AVDTSYYKSRDMARGDIVYYGDHDVSRIVALPNETINITNGQVYINGAKLTAFYGAAHIR GYDYKAFQTSDMEELAKQNLIEEIYKKQVREITLSGNEVFVIGDDWSRSNTSTFRSLSLQ ELKGKVMGVCKKCSNP >gi|333604167|gb|AFDH01000112.1| GENE 203 244720 - 245058 191 112 aa, chain + ## HITS:1 COG:no KEGG:BBR47_16480 NR:ns ## KEGG: BBR47_16480 # Name: not_defined # Def: RNA polymerase sigma factor # Organism: B.brevis # Pathway: not_defined # 16 84 4 72 183 109 75.0 4e-23 MNDEQLEHWLDRLAGGDQEAMEEIYRMTRRKVYGTVAVLVSNKEDVNDIVSEIYCQLWRA LPGYDRSRPFHFWLNGIVIRQVSSLAPSALETIPSDRQNFPSERRAACGNTG >gi|333604167|gb|AFDH01000112.1| GENE 204 245042 - 245308 168 88 aa, chain + ## HITS:1 COG:no KEGG:BcerKBAB4_5577 NR:ns ## KEGG: BcerKBAB4_5577 # Name: not_defined # Def: RNA polymerase sigma factor # Organism: B.weihenstephanensis # Pathway: not_defined # 1 80 108 187 194 82 46.0 6e-15 METPDEALAGNELRQDVRDAINRLPYKLRVVIIYRYFYEYTYDEIAELLAIPPGTVKSRV HLALKRLRAKFDTQLDGEAYPNVYSRKH >gi|333604167|gb|AFDH01000112.1| GENE 205 245415 - 246068 839 217 aa, chain + ## HITS:1 COG:no KEGG:BBR47_16490 NR:ns ## KEGG: BBR47_16490 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 1 216 1 209 210 247 56.0 3e-64 MKKRLIAFSIAAAILIPTSVFASLGGSSYFFKESANINGLVNEGTKRALSEGLSVPLNEK ITDHGLTVQFSEVYVEDSKVLVHYKITGEDGKLVPYEFDTRGLNVLYDGKKNGKQVENPT YQENGLDGFSVLSFIGTGKKDRLPFTLTDAAGNVIHTGIAEKDQPEGVLAFVTSGAKLPE SIRLNVNIDRIGATKGSWKAQFTIDQSKAKQASEKAH >gi|333604167|gb|AFDH01000112.1| GENE 206 246302 - 247042 339 246 aa, chain + ## HITS:1 COG:CAC1614 KEGG:ns NR:ns ## COG: CAC1614 COG0463 # Protein_GI_number: 15894892 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Clostridium acetobutylicum # 7 238 24 255 256 172 37.0 4e-43 MKDGSIESVKKLGVSVVTCTNRRSYLKNLLDNYKRQDHPTKELIIIVNNDKIPLAPYRES AKKLRNIRIFRVSEQTSLGACLNYAVKKAKHGYIAKFDDDDYYAPYYLTESLQTFRQTKA DVIGKRAHYMYLRGSKTLILRFSQDENRPVTRLPGATLVIRRDVLKKVPFPDRNVGEDDL FCLRSKKKGFKVYSAGKDNFVAIRRKNSSNHTWIISDKELITHHKKIPNVSNYKKFVQRK PKGGVL >gi|333604167|gb|AFDH01000112.1| GENE 207 247042 - 247773 385 243 aa, chain + ## HITS:1 COG:CAC2351 KEGG:ns NR:ns ## COG: CAC2351 COG0463 # Protein_GI_number: 15895618 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Clostridium acetobutylicum # 12 231 26 245 252 174 39.0 1e-43 MANPDAVRPEHAVSVITCTKRRDCLEALFQNYSRQNFRNKELIVILNQDDLKVNEYMQAA KAYKHVRIYSLPEHMSLGTCLNFGVRLSKYNRIAKFDDDDYYAPDYLTDSMRIMAKTGAD IVGKRAHYMYLNGTKTLLLRYPARENQYVSLVQGATLLVKRHVFDKVGFPDQNRSECVKF CSDSAAKGFTIYSGSPYNFLAIRRKNSKDHTWIVSDRQLLERNAKLVRAKNAREFVSRRS LDT >gi|333604167|gb|AFDH01000112.1| GENE 208 247937 - 249418 1238 493 aa, chain - ## HITS:1 COG:BH3939 KEGG:ns NR:ns ## COG: BH3939 COG0397 # Protein_GI_number: 15616501 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus halodurans # 1 493 1 492 492 708 71.0 0 MTDKKAGPETGWNFDNSYARLPEIFFTKTNPTPAASPDLVIFNDALAASLGLNGQALKSN EGTEVFAGNRIPEGAEPLAQAYAGHQFGHFTMLGDGRAVLLGEQITPDGERVDIQLKGPG RTPYSRRGDGRAALGPMLREYIISEAMHGLGIPTTRSLAVATTGEPVYRETELPGAVLTR VAASHLRVGTFQFAAKWGSAEDLRALADYTLQRHYPEAAAAGSGNRCLSLLQAVIQRQAA LIAKWQLVGFIHGVMNTDNMALSGETIDYGPCAFMDAYDPETVFSSIDTYGRYAYGNQPH IAAWNLARFAETLLPLIHADQEQAIKLAEEAIAQFGVLHNRSYLAGMRAKLGLFNEEEGD ESLIEDLLGLMRKQGADYTNTFLALTFGKLEDTALSGDEEFTRWHESWQARRGRQPESAA ASHELMRSSNPAVIPRNHRVEEALEAAVEQGDYSVMERLLGVLANPFAHSPEQAAYSTLP EACDSPYRTFCGT >gi|333604167|gb|AFDH01000112.1| GENE 209 250002 - 250769 721 255 aa, chain - ## HITS:1 COG:CAC1519 KEGG:ns NR:ns ## COG: CAC1519 COG0577 # Protein_GI_number: 15894797 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Clostridium acetobutylicum # 67 250 463 648 652 95 25.0 9e-20 MGLHDTEELADGESLLLPGSLFLATQIKEKKEIVPDSIDLGISETWQKNVTVKQYVPTVI LPDGHYTVVVSDRMFETVPEIEDTQLHFNFFYVADWQNTRDVASVLTEEIGRDEFGRFDA LVLDWLSDKQTNGLLFIISTMVGVVFFTFAASFLYFRLYADMERDREQYRMIAKMGLLNK ELRRIVTRQLLLMFFLPIVMALVHSGVAFIALQHLVDFSVWTNSVLIFLSFIGIQVVYFL LIRWRYLQHMYPKNG >gi|333604167|gb|AFDH01000112.1| GENE 210 250870 - 251913 957 347 aa, chain - ## HITS:1 COG:BS_yxdM KEGG:ns NR:ns ## COG: BS_yxdM COG0577 # Protein_GI_number: 16081014 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Bacillus subtilis # 1 347 1 339 622 227 41.0 3e-59 MTFRQFAFNNVIRNKRVYLAHFLSSSFSVLVFFVYALLLFHPDLQGELKSTSRTISALAT NGMRLSQVIIFIFSFFFCLYSAGTFLQTRKREFGILMMHGMSPRQLRRLVFIENLFIGGA SIVTGIAVGLIFTKMILLAIAKLLVIKVGLTFYMPVLAIVTTAAAFVLLFGVVALVTSRI VKAGRLADLFQSDEKPKPEPAPSRLLSVLAIVLILAGYGVVMFYVYRYFHSFWLLFAGVG LVVAGTYFLFTQLSVYALKSLKRRDRVFFKRTNLLVLSQLAYRMKDNATMFFMITIVSAI AFTGIGTVLAMNHPGLKEMENPYAFTYKTDLSVQKEKKLFHGSKTTG >gi|333604167|gb|AFDH01000112.1| GENE 211 251888 - 252658 275 256 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|225084369|ref|YP_002657150.1| ribosomal protein S16 [gamma proteobacterium NOR51-B] # 4 233 9 236 309 110 31 6e-23 MAILKVTNLCKIYNEKMPFEALSDINLTIEKGEFIGIMGPSGSGKTTLLNLVSTIDEPTS GEVCVDGNYPHRMNADELALFRRRKLGFIFQSFNLLPTLTVKENILLPLTLEGVALDQMK SLLEPIAEQLGITSVLDKRTYEISGGQAQRTAIARALIHSPKLVLADEPTGNLDSKSARD VMELLTTMNKRQEATMMLVTHDAMAASYCDRVVFIKDGRFHNEITQGGNREVFYQKIINA LSLLGGYRHDFPTVRV >gi|333604167|gb|AFDH01000112.1| GENE 212 252639 - 252797 63 52 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTFKIAKQNTSLLASSIPQAIRRSYIAILRQSYRDVSLREVYTPVCTQKGEE >gi|333604167|gb|AFDH01000112.1| GENE 213 252805 - 253797 804 330 aa, chain - ## HITS:1 COG:BS_yxdK KEGG:ns NR:ns ## COG: BS_yxdK COG0642 # Protein_GI_number: 16081016 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Bacillus subtilis # 1 322 1 321 325 238 40.0 9e-63 MRLFVRDHVPLIGFSLVQMLVILLICWLDGYNHLGTALYALFLGLCVLLVYLMYRYVRLR AFYRYISDPSDVLPRELKVSRAPLAASLTKILDAQYRANKQREHVWEEKQRQHLTFMNQW VHQMKTPLSVIQLITQNGDDERFASIAEESDRLRHGLEMVLYMARRETFAQDFHIYRVQL RELVNEVIQDNRRSFIRHYVHPELLIDESVTVESDAKWLRFIVQQLISNAITYSAGSRTK VAFKAHAQDKAVILSVTDRGVGIPPSDLKRVFDPFFTGENGRKFKESTGMGLYLVKEVAD RLHHRVEIESEPGKGTTVRIIFPYATEQGE >gi|333604167|gb|AFDH01000112.1| GENE 214 253794 - 254495 838 233 aa, chain - ## HITS:1 COG:BS_yxdJ KEGG:ns NR:ns ## COG: BS_yxdJ COG0745 # Protein_GI_number: 16081017 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Bacillus subtilis # 1 223 1 225 229 251 56.0 7e-67 MNKIMIVEDDPKIAELLKSHIEKYGDEAIVVDDFQRVMESFEEQLPQVVLLDVNLPSYDG YYWCRQIRTVSTCPIIFISARNGEMDQVMALESGADDYITKPFHYEIVMAKIRSQIRRVY GDYATKERIVERDGLMLYPERMELRLKEQSTLLTRKESLLMETLMHHCPRIASRETILDK LWDDYSYVDDNALSVNITRLRKKLAELGMDDAIETLRGVGYRLHLTWKGETKR >gi|333604167|gb|AFDH01000112.1| GENE 215 254515 - 254682 56 55 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MCKRLGVTSIKPQNSARPNKGPNGEELHSPQQSNNLLFGYNLKERFILTRPVYSH >gi|333604167|gb|AFDH01000112.1| GENE 216 254731 - 255732 293 333 aa, chain + ## HITS:1 COG:SPy1863 KEGG:ns NR:ns ## COG: SPy1863 COG0789 # Protein_GI_number: 15675682 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 24 93 5 74 245 67 42.0 4e-11 MHSKSGTDSQKQQASDSTDQERTYSIGDVAKIIGSTIKTVRYYDEVGLVKPATYTEGGHR LYTTQDIWRLELTITLRYLDFGIDEIRQIISRETPVDKALDWQIESLELQVSTLSNMISI LRLAKENEGDSLQYVYDLVHERAINNEKRSRFIAKRVEESKFLEGIPAEWRSSLLYNFNK YIVNQTKTSAKQTVAWNELQELINDPEFISDLRQDEFLFFNMVHQPRLGADAWIKSLEGI HTRLNTALKRKLCAESPFVQAIVEDTAMLYANSEQSVDQEEFFRYFAEYSQRTRSERIER FNTLCSLLSPKFRLFSQGNLLLLQGIKWRLEQM >gi|333604167|gb|AFDH01000112.1| GENE 217 255799 - 257256 821 485 aa, chain - ## HITS:1 COG:BH0727 KEGG:ns NR:ns ## COG: BH0727 COG4188 # Protein_GI_number: 15613290 # Func_class: R General function prediction only # Function: Predicted dienelactone hydrolase # Organism: Bacillus halodurans # 1 463 1 450 450 221 33.0 2e-57 MRSFEMLVTVFNILLLGWSIMAKNKPRRVLLIGSGISALLALTQGLTEGMRWQMIPVYAM TLIPVAIFAVRYRIKPKEEEKKAARTRRIILITALAALYSAAAVALPVLLPVFTFEKPSG PYQIGTVSYHWKDDRREETHTPDSGDKRELMVQIWYPANMNAKGKTASYVSHADIFADGY GKALHLPKLLFTSIGLVKTHAIEKAELSDKEPAYPVLVFSHSLNGTKNQNTFEVEQLASQ GYIVVGIDHTYRSTTSVFPDGRVVNFVPQEGNTVAYLDKINGEWVEDAKFVVDQIERLAK NDPDNRFTNRMDLENMGMFGHSFGGATAVQMLMADSRIKAAINMDGGLYGELRIPAEGLR KPFLMFSADDTLSGTKNMSDENITSQGTTREELTKFFDETLARYKYITTGGNYWIKMNAM KHMGFSDMYLISPVFEKMEGVEVRKAHRLINEYSLDFFNHYLKQKPFNLLEQTIGEHPGF TLEKG >gi|333604167|gb|AFDH01000112.1| GENE 218 257297 - 257368 84 23 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGKLRGPITETTVESPVTGGFIL >gi|333604167|gb|AFDH01000112.1| GENE 219 257467 - 257955 496 162 aa, chain - ## HITS:1 COG:DR1146 KEGG:ns NR:ns ## COG: DR1146 COG3871 # Protein_GI_number: 15806166 # Func_class: R General function prediction only # Function: Uncharacterized stress protein (general stress protein 26) # Organism: Deinococcus radiodurans # 9 161 34 193 193 137 48.0 1e-32 MSAYEKNQEAIEKVRDLIKGIDVAMLTTISSEGLVSRPMSTQEVEFDGDLWFMTMKDKSV YRELLENKSVNLAYVDKSYVSVRGEAELIEDRAKLKELWSPMYEKFFGVSSDDPGLVLIK VKAETAEYWEAGNRMKLVKNMFKKLTGKENDESDLNKTVELD >gi|333604167|gb|AFDH01000112.1| GENE 220 258330 - 258773 427 147 aa, chain - ## HITS:1 COG:SMb20607 KEGG:ns NR:ns ## COG: SMb20607 COG3832 # Protein_GI_number: 16265267 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Sinorhizobium meliloti # 5 111 9 119 154 104 48.0 5e-23 MAIGENELVTTREFDVPRELVFRAWTTPELLARWWGPKGFTNTFHECDIRPGGTWTLIMH GPDGTDYPNHSVFVEVVAPERVVLDHLSGHEFRLTGTFEDLDGRTKVTFRQRFKLKEDFE QAKPYCVEANEQNLDRMGEVLAELAGS >gi|333604167|gb|AFDH01000112.1| GENE 221 258776 - 259219 484 147 aa, chain - ## HITS:1 COG:mll3774 KEGG:ns NR:ns ## COG: mll3774 COG3832 # Protein_GI_number: 13473238 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Mesorhizobium loti # 1 132 1 139 154 154 51.0 5e-38 MNEQFVKHATFVVERVYAASPKRVYHAWSDPDAKAKWFSKPDVFDFRIGGREYSSGGPPE GPVFTFDANYQELVPDRRIVYTYTLDSGDTRISVSITTIELIAVEDGTKLIFTEQAAFFD GHDTPEVREHGTNAMLDALGKVLEGEE >gi|333604167|gb|AFDH01000112.1| GENE 222 259216 - 259722 294 168 aa, chain - ## HITS:1 COG:CAC3475 KEGG:ns NR:ns ## COG: CAC3475 COG0789 # Protein_GI_number: 15896713 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Clostridium acetobutylicum # 6 121 2 114 243 82 37.0 3e-16 MKRHWKVGDLAKLTGLTVRTLRYYDQIGLFSPSAQTESGHRLYSESDLSRLHQILSLKEM GLSLEEIKSVLTGGQIGPLEIVHLQMDRIKEQIRRQQKLLEQLGHVSKLMQGKAQVTVED FTDLLQAMQMGFEKPVIERQTSWERHLDRLGDFLAGESGMPKLEEDKQ >gi|333604167|gb|AFDH01000112.1| GENE 223 259923 - 260516 421 197 aa, chain + ## HITS:1 COG:no KEGG:BcerKBAB4_1139 NR:ns ## KEGG: BcerKBAB4_1139 # Name: not_defined # Def: hypothetical protein # Organism: B.weihenstephanensis # Pathway: not_defined # 64 196 96 221 223 116 51.0 7e-25 MVLSRIELKQQRTAALTAGIALIVMTLAAFFPMALSMKVFWCKAMLASPFKPSHHRETFS KRKTAVLGTALLNLIVVLLLSGRAGYLSFVNTQQLQAYVMMYLEAFELIWSMGLIIFGVH LLIIGVLALKSDRIPKVIGILLLIASLGYMAIHLCNLLLPDNETLTMLLNVGFRIPMIAG ELGFGVWLLARGGQSSV >gi|333604167|gb|AFDH01000112.1| GENE 224 260901 - 261314 326 137 aa, chain - ## HITS:1 COG:no KEGG:Bsph_3288 NR:ns ## KEGG: Bsph_3288 # Name: not_defined # Def: regulatory protein, MarR # Organism: L.sphaericus # Pathway: not_defined # 13 135 2 124 133 75 37.0 8e-13 MEEQTVFELIHNMDKFTNGLIIQWNKTFNEDLGVSHVLVLGHLKQNGKSRPSDIAKILGL TPPTLSYLSEKLVAKKLAVRMVDESDRRIIYLGITDQGAEVLRRATLEGERLRRNLFEKL TDEERAELANLFKKLNS >gi|333604167|gb|AFDH01000112.1| GENE 225 261382 - 262116 282 244 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 7 239 4 238 242 113 32 1e-23 MGQLDNKVAIITGGASGIGERMVDLFAQEGAIVIAADINEEALERASRKQNVHGMKLNVA SDEDWAALAKEVNDRFGKIDILVNNAGISSEKPFQEIDAQDWQKMLSINGFGPFAGIKQV TPYMAEQKQGAIVNISSYTALIGQGFNHYSASKGAVRALSKAAAAAFGRQGIRVNALFPG IIETPMTQALSTSKDLLGRLIQMTPLQRLGQPDDIAKAALFLASDASSYITGSELVIDGG YSAQ >gi|333604167|gb|AFDH01000112.1| GENE 226 262128 - 262877 210 249 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 3 243 1 238 242 85 29 2e-15 MKLQGKVAIITGSASGIGRGIALAMAKEGAHVAIVDVNEQKGQETLAEVNQYTEGCLFIK DISVKENANAIVEEVVTKFGKLDILVNNAHASRQASFVETTQELLDLSFGTGFYPTFHFM QAAYPELKKTKGKVINFASGAGLDGQVTQTSYAAAKEAIRAISRVAANEWGPDGINVNLI SPIALTPGVEQWRESAPHLYEAMIERIPLRRLGDPEQDIGRVALFLASDDSNYITGQTIM VDGGSIKLR >gi|333604167|gb|AFDH01000112.1| GENE 227 262921 - 264186 915 421 aa, chain - ## HITS:1 COG:BH2694 KEGG:ns NR:ns ## COG: BH2694 COG0477 # Protein_GI_number: 15615257 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus halodurans # 5 403 2 398 418 116 28.0 9e-26 MSQNKRKIHYAWWILLGLCMMVGLGKGSLNNSAGLFLKQVSNDLGVGMGSLSLYFSVSAI ITMFFLPIGGKLMAKYDTRLILSAAIILQAGAFAMFGLMNSVWGWYILAVPLAVGGVFIT VIAGPVLINQWFKKSKGLALGIMGAAGGAIGAISQPIVGNLIANQGWRTSYIIVGIAVIV LVVPIVLLLIRKSPLEKKTLPYGAEAAGNTSAGAGAGAENKGVTLAAAKKSSAFYALLTF FFLITSVASFSVHIPSYLMNKGFDVSFAGNVMATNMIGVLIGSLVIGFASDKIGTRNTAM LAMILGVLAIGLLLFAASSTLVISLAVGLFGLVSASIGTLGPALTSSLFGNKEYSQIYSN ASLGLAISSIIALPAYGFVFDFTGSYTPVLYAIGIMLILNIVCISIAFGGKKKLEQAGLW N >gi|333604167|gb|AFDH01000112.1| GENE 228 264556 - 266658 1214 700 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_6224 NR:ns ## KEGG: GYMC10_6224 # Name: not_defined # Def: conserved hypothetical cytosolic protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 3 699 2 698 699 1121 79.0 0 MNINTIYLRRAGKVIVEQGEGEDRLSKAYLAAALKNIEALGFTFSHRLIRAVCTLSKEQF EAFYRELIGDLKRLVGAHVEYKPMYPGFPAQVMEGHDAELYLNAVYHYLTLDLPEYETAQ RLPLRDAADLKVIDLGSKAEFHVRISRLIQAKTSISETDKEDIDAAVEYADPDELDAILP SEIPFKENAAFVAASLLKHDKAGLERVGRYFKTATDILRLAAAWSDGDVSLAEPARFRKF KRSERRLLLGLLERCHSITEDMLRYKDRWIRLGEILHPSEYKNRFTRCQEAFGILRNNKP FTTFGGSVELAFQFQQVWTLIDLLMQRPGEFARRLDQLLRSTEHTEYVVLAFGEVADQVS TPVLLQVKNHFARRHERPELRVFFPKGNAAKAFAIPHTLPEINETACRDIVEVCEKTLVQ RFSDLPPLGKTHVDKRLKDYHVPFSQRSASKALRTLVRGSRVPMTKGDTIRFFSWWKEGT VDGKPTGRVDIDLSAVMYDRDWQYVEHISYTNLRSSKYQAVHSGDIVSAPQGACEFIDLH IPSIVDYGGRYIVASLHSFTEQPYCDLPECFAGWMMRKKPGSGEIFEPSTVVNKIDVTAD TRIAIPVILDLVERAVIWTDLSLTRDPQYFNNVEGNQKGMVLIGKAMTTLRKPDLYDLFT LHAKARGEAVDTADQAEALFSVDSGVTPYDIEQIMAEYMG >gi|333604167|gb|AFDH01000112.1| GENE 229 267086 - 268168 913 360 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_6226 NR:ns ## KEGG: GYMC10_6226 # Name: not_defined # Def: ankyrin # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 359 122 480 480 596 83.0 1e-169 MIQLKDIGKFEKLPEIALHIYQGNIPALREAIAAGWDIEEGIELSKYTTLSPLDLALISE RLDVVKLLVENGVNLNVPHNPAFLRAVRYCKEDIVRYIAGQGAKPDKLNHIKSGAYSQAY YGNKNNIPLLHELGLDLKKHGSAVLRQAVSDHDHKTLAYLLDHGADINYNKPDQVYPYQA TPLTVATRMGNAAMVKYLIERGADVTITEKDGDRAYTIAVGNKNAALADYLKSLEPAELH DRENKKYELTKYKLTDELVTFLTGDKLRLELAPNDYKIGYIDFFTLTDTIEMKAGRQKLL RLSADIDNYSDLQLVWNPKKKGLIGCYDVEHQEYADLCGFTEFLAQPETYLIKFLEGELQ >gi|333604167|gb|AFDH01000112.1| GENE 230 268448 - 269185 703 245 aa, chain - ## HITS:1 COG:AGl3471 KEGG:ns NR:ns ## COG: AGl3471 COG1028 # Protein_GI_number: 15891852 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 1 245 11 257 257 211 47.0 1e-54 MVTGASRGIGRGIALRLAQEGAFVAVHYGQRRNEAEAVVQQIGQSGGNACAIGADLSTLG GIEHLFVALDEAIREHTGGNGFDILVNNAGIGQILGLEETTEESFDEVMKINVKAPLFVT QHALPRMKDNGRIINVSSFVTRVASPSVFTYSMSKGAIDTFTLLLAKQLGSRKITVNAIQ PGIINTEMNAGTLQDPNGQKNAAGLSVFDRWGEPDDIADVAAFLASPDSRWVTGQLIDAS GGSHL >gi|333604167|gb|AFDH01000112.1| GENE 231 269381 - 269542 155 53 aa, chain + ## HITS:1 COG:AGc3872 KEGG:ns NR:ns ## COG: AGc3872 COG0477 # Protein_GI_number: 15889415 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 2 50 356 404 405 64 67.0 5e-11 MLFMAIFFFGGAIGSAIGGWLYATGGWSAALWIGIAFPIVALLYFATEKKQVL >gi|333604167|gb|AFDH01000112.1| GENE 232 269689 - 270777 333 362 aa, chain - ## HITS:1 COG:lin0407 KEGG:ns NR:ns ## COG: lin0407 COG4292 # Protein_GI_number: 16799484 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 1 307 1 308 371 219 41.0 8e-57 MVEKKVTWLELFYDLLFVAAVSKATHVLLHADHGVIPIEYLVKFVLIFIPIWWGWVGQTL FVNRFGQDIFIHRILSILQLFFILIMTASLSPDFDQYYIPFFIGYIGSRALTAIQYLLVH KSKAAHQQSTASYLGTHFVIGILISACSLFFDSWIRYAVLYMGIAVDIVLPLIGRKHLVK TPIHTPHLFERFALFTLILLGESVVSILAVLQFSSWDLSSVLFVAFTSALVIAIWWQYFD NVETKVSKEIQTAGQTIIYGHLFIYLSMSMIAAAIQLLYQEKLNYSFMLVFVFGSVLLYF FSTSLVFHLYRPKHLRLRPNHLAVLLGILGCCMAFDLIYQVPNYAIVGEIMVFFIAYAKL TT >gi|333604167|gb|AFDH01000112.1| GENE 233 270784 - 271299 235 171 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_6227 NR:ns ## KEGG: GYMC10_6227 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 166 1 166 188 231 70.0 1e-59 MELSFYLDTHGTCVSQLRDELLPLEEAAKTWEFPYAIVVVFRVLPESYERRTFRRFDSGD NFLGLDISLIYEQYLRMSKNEQREALGIYFYNYLSESVAKYKKHADKDTQNRFLAHVKSW MLENNWLHGKINKARELLAQDRGLYEVSQELKMPLEEIEYILLRMNENRGI >gi|333604167|gb|AFDH01000112.1| GENE 234 271330 - 272076 407 248 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_6228 NR:ns ## KEGG: GYMC10_6228 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 242 1 242 245 363 71.0 5e-99 MYLVSRPKPLSDDNNQALAKAEAVSFPPGYLRFLRSFGEGTYSGWMNVQLPDPEVLKPFA EYGLWEHDADSPITERQIGECVAIGTTVDGDFLAMHPRTAQLLWLPRHAVQVTAIPLQAR EREDEATYASVLDEIYRQVYGCGREGAVYYEPWTGSRGHLFLRLPPGQDQLSLPDLAGMC RTAFSPDLSIETDYSCYLFYQTLGGYVRFNYANKQEVAVMYEQEEIQAFAAIKQWLVSKG CEPYPENK >gi|333604167|gb|AFDH01000112.1| GENE 235 272276 - 273763 1204 495 aa, chain - ## HITS:1 COG:BH3960 KEGG:ns NR:ns ## COG: BH3960 COG0579 # Protein_GI_number: 15616522 # Func_class: R General function prediction only # Function: Predicted dehydrogenase # Organism: Bacillus halodurans # 2 495 7 500 500 840 83.0 0 MKTDVILIGAGVMSATLGSLLKELVPEWEIKVFEKLAKAGEESSNEWNNAGTGHSALCEL NYTSEKPDGSVDISKAIQINEQFQLSRQFWSYLVNSQLISNPQDFIMPIPHMSMVQGQEN VTFLKKRFEAMSNNPLFQGMEFSDDPEKLKEWIPLIMEGRTSSEPIAATKIDSGTDVNFG ALTRMLFDYLQTQNVEMHYKHSVDNIKRAADGSWELKVRNLDNGSVELHTAKFVFIGGGG GSLHLLQKSGIPEGKHIGGFPVSGLFMVCNNPEVIEQHHAKVYGKAKVGAPPMSVPHLDT RYIDNKKSLLFGPFAGFSPKFLKTGSMFDLITSVKPDNVLTMLAAGVKEMSLTKYLIQQV LLSNEKRVEELREFIPNAKGEDWDIVVAGQRVQVIKDTEAGGKGTLQFGTEVITAADGSI AALLGASPGASTAVHVMLEILARCFPQHMKEWEPKIKEMIPSYGLSLLNNPELFQEILTS TAQTLGLVEKELVYS >gi|333604167|gb|AFDH01000112.1| GENE 236 274166 - 274831 707 221 aa, chain - ## HITS:1 COG:BS_yvqH KEGG:ns NR:ns ## COG: BS_yvqH COG1842 # Protein_GI_number: 16080365 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Phage shock protein A (IM30), suppresses sigma54-dependent transcription # Organism: Bacillus subtilis # 3 216 2 210 225 72 27.0 7e-13 MGILKRVKDVFLAETNGLLDKYEQPLNMVNQYIREFEQELAKGQKALANQLFIEKRQAAL IAETEAAIEKRERQAKLAVKQDEDHIAKLALQEKLLQEKKLAAYRTQYATIQEQTKVLEE RIGQLLVQSEEFNHRRLLLASRANVASSLKEINGSVVSFQTENVTKGFARVEEKVLMMEA EVEATAHFTSPAKRSAPQYLDPSLTVDIEKALEELKRQDQK >gi|333604167|gb|AFDH01000112.1| GENE 237 274833 - 275333 337 166 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MCAFTVLLLFGTILIYVEKILVTKGRISMKPGKPWIKKLLLTAGIIAIIGVGVSWAAGMN KSNYKQAFEHGKQIAEPYFYKGGGKDLAGPADRHERGMRGGQHHRGGDAAAAVGGTILAG GLLYWVIQRRKKTGAMSAAQTAPVIPATSDFLDQWEKNQTNKKETN >gi|333604167|gb|AFDH01000112.1| GENE 238 275375 - 276685 781 436 aa, chain - ## HITS:1 COG:all7605 KEGG:ns NR:ns ## COG: all7605 COG0642 # Protein_GI_number: 17158741 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Nostoc sp. PCC 7120 # 169 435 174 450 466 165 35.0 1e-40 MKDKRMKKADLFVQTQKKLTFTYTWLILLFLVLFSFIVAVFFLGMAYREQRQTLLSSMYA TENGRVAVPDLSDSRGEDLYFFYVLDGRGKVLAGSEAFPQNGSANLEKIGRWQPHRDEFR LEWIPASDDRHDARKSRERDRLLFVGARPLMADDGRSGAIYAAKDVTFYFEVSKNLLLVF LIILVLFIIVAMRLSYSMSKKAMIPIQQAYRQQQQFLADASHELRTPLSIMNTSLDVIEL ENGEDFTSYTQEVVSDMKEEVGRMSRMVQHLLLLARSDSGSVEFEMVSSDLVPKVRQWML AFEAVAHQKQIELKAELPERLTVTGDVERVKQLVYILLDNAIKYTPENGTVDVAMGSHSK HWYLSVRDTGVGIPEEEHQRIFDRFYRAEKHRSREEGSAGLGLSIAKWIAESHRGSIEVE STAGGGSTFVVKFPLV >gi|333604167|gb|AFDH01000112.1| GENE 239 276675 - 277349 382 224 aa, chain - ## HITS:1 COG:FN0585 KEGG:ns NR:ns ## COG: FN0585 COG0745 # Protein_GI_number: 19703920 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Fusobacterium nucleatum # 1 220 1 218 224 165 41.0 6e-41 MNILLAEDDKKLGKLVKYVLEKKGGYHVDWVENGEDALDYARASFYDVLILDWMMPRTDG IEVCKGLRAANYGQAIVLLTAKDALQDKILGLDAGADDYLTKPFEMDELLARLRTLTRRN FAPIQANIVAFGVFTLNRTSRRLFKSGDEIFLSQREYQLLDLFLQNIGHVLTREVILDRV WGIGSEVSYKNVDVTVKMLRDKLEAAQEEPMIHSVRGVGYRFER >gi|333604167|gb|AFDH01000112.1| GENE 240 277555 - 277686 107 43 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKQLVRQVLDNKGGDRELYELRDGDSDWTKHMENVIRILSERL >gi|333604167|gb|AFDH01000112.1| GENE 241 277792 - 278409 227 205 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_6234 NR:ns ## KEGG: GYMC10_6234 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 201 1 201 203 285 70.0 7e-76 MDRLKHSGFYKLKFFVTPEEFKGVWELFEPKHAQFHLTNHARTKHDQHQVVEAYTTFYQY FTAQEKPNYYPFFVYSISFAAGNESSGFFVRNEGISFPYHGQWAEDELPYVMLSLPKGFQ INLEDEKGKYYIYEDIREHQPLTYAFFDEIANDMKKITKPLRFSAYAADALQEQKPPVRI SANAANDMMNSWMFKKYKLVMKGKQ >gi|333604167|gb|AFDH01000112.1| GENE 242 278648 - 280357 1202 569 aa, chain - ## HITS:1 COG:SP1824 KEGG:ns NR:ns ## COG: SP1824 COG1178 # Protein_GI_number: 15901653 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+ transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 24 568 16 562 563 536 53.0 1e-152 MNADKIKKRLASINPTAFVFYALIAWFVTAFLIYPNLNTYYEIFFKGGKFSFEAAEKLMS SERAMRSLYNSFILAVSLVFTVNIVGVTLVLISEYFDIKGAKILRLGYFTTLIYSGVVLV SGYKFVYGETGFMTKLLVNLFPSFDTTWFHGYWAVLFVMTFACTSNHVLFLSNAVRKIDF QTVEAARNMGASTFYILWRVVLPVLKPTMFALTILIFLTGLAATSAPLILGGVEFQTITP MILTFSNSSSSKDLAALLALILGLATLILLTLMIRFERKGNFMSVSKVKSELVKQKINNK FGNIAAHILAYFLFLLYIIPVVLIIVFSFTDAHSISTATLSSHSFSLSNYMNVFSNMSAF KPYLVSIVYAAAASVTVVALALAASRILHKFKNKWTMALEYALLIPWMLPSTLIAIGLIV TFNTPRLIIGNSILVGSVWMLFIAYVIVHIPFTLRMVKASFFSLDSNLEDAAKNLGAKSF YTFTKVLLPIILPSTLAILALNFNGILADYDLTVFLYHPLYQPLGIVIKNSTDAQALADT KALTLVYSVILMIMSAITLYFVYGRKSKA >gi|333604167|gb|AFDH01000112.1| GENE 243 280375 - 281382 775 335 aa, chain - ## HITS:1 COG:SP1825 KEGG:ns NR:ns ## COG: SP1825 COG3842 # Protein_GI_number: 15901654 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport systems, ATPase components # Organism: Streptococcus pneumoniae TIGR4 # 1 335 1 336 336 367 57.0 1e-101 MITFNEIQIKFGHFHAIKNLNLQIKEGEFFTFLGPSGCGKTTILRSLVGFIKPTSGQIML NGRDITHVPIEKREISMVFQSYALFPTMNVYDNLAFGMRVKKASKADIDREVRDIAQKVD LKEDQLFKKVSELSGGQQQRVAIARALVLKPSILALDEPLSNLDAKLRVQLRNELKNLQK KFGITTIYVTHDQEEALTLSDRIAVFNNGIVEQVGSPQEVYNQSKTEFVCNFIGDINRID PLIIQNSRLKDCIDANKIAYIRNEKVSLLPLPSTDAVQIKGKIVDQEFYGLYSKYLIEIA GGGLIKTIEKESGFAPNKVGDDIDIYIRISDILQY >gi|333604167|gb|AFDH01000112.1| GENE 244 281464 - 282561 1059 365 aa, chain - ## HITS:1 COG:SP1826 KEGG:ns NR:ns ## COG: SP1826 COG1840 # Protein_GI_number: 15901655 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+ transport system, periplasmic component # Organism: Streptococcus pneumoniae TIGR4 # 12 365 9 355 355 219 35.0 9e-57 MFKKMVSASLLTILCLAVTACGGTNNNGNADGTTPSTNAPSASAPVKNEKLIVYTNANSD GRGEWLVEKAKSSGFEIELVGAGGANLTNRLIAEKNNPIADVVFGLNNMLYENLKKENVL SKYVPKWAGDVEPGLNDPDGFYHGLVKQAILLSYNPSKFTAETAPKDWTELYKNPAFKGK YEAPTLLGQITPQLVVAGILTRYQDPNGELGISKEGWNEVKQLFDNGVRAVEGEDFYANL ASGKTPLGAVVSGTLSKKEEQYKVKASIVSPQIGVPMIVEHAAIINGTKKKATAERFVEW IGTAEVQGEFASKFNSMPANTQAAAKANESVKALYANLKAQPMDWGFVAGNIGKWVEKIE LQIMK >gi|333604167|gb|AFDH01000112.1| GENE 245 282664 - 283500 261 278 aa, chain - ## HITS:1 COG:BB0533 KEGG:ns NR:ns ## COG: BB0533 COG1235 # Protein_GI_number: 15594878 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily I # Organism: Borrelia burgdorferi # 11 278 5 253 253 72 26.0 8e-13 MTEGVYMKIHFLGTAAAEGFPNAFCRCEYCLKARELGGKNIRTRSSAIIDDVIKFDYGPD SYMQALRDNIDLGAIQHLLVTHTHSDHYNAYDLECRRAGIAHDLPYPLHIYGNDAVMHHT RAAIGRFEGERFAFHLLRPFETITVGDARVTPLLADHDRMETCLLYVIEKEGKSLLYGHD SGWFPEATWAWLKGRNLDGAILDCTHGYTGKSRDRNHMCIETVLEAQREFRNEHILKEEG HIIVTHFSHNSKLLHDEFEDIFKPAGIVVAHDGMIFHI >gi|333604167|gb|AFDH01000112.1| GENE 246 283503 - 284651 402 382 aa, chain - ## HITS:1 COG:L0146 KEGG:ns NR:ns ## COG: L0146 COG1609 # Protein_GI_number: 15673482 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Lactococcus lactis # 13 380 5 340 345 135 27.0 9e-32 MKNVQASKKPNLLYLQIADKVIEIIRSRRLQPHDPVPSEGELAKLFGVSRMTSKLALEQL AEQGLVYRLPRRGTFLSGNQDGVLESGLLSADKKALPIATKEKQCNQIALIVPHLSDYTS RIIAAAEIEARKHDCDLILKISQNKEDEDRCLQRLVDGGISGIILFPQGRKTCSDQVLRL KLQQFPIVIIDRIFREVQIDCVYHDHYLGSYQMTRYLIEKGHREIGYTSNSIDNITSREE RYQGYIQALLDHAIPVKNQSILFKSVPCNPSHINEGDPEQERFIHENPQMTALMCGDDHV AISTLYTALRMGIPVPDKLSIVGFSDIQLSALAPIPLTTVRQDTEQLAQSAFNLLMKRVK HSLEKQITIKIQTTIVERKSVL >gi|333604167|gb|AFDH01000112.1| GENE 247 285117 - 286670 378 517 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_4454 NR:ns ## KEGG: GYMC10_4454 # Name: not_defined # Def: tetratricopeptide TPR_2 repeat protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 4 515 5 516 516 770 71.0 0 MTKNKQRYRFSEAPIWNIQRKYYEEAGTKAWNNDQVPQYITSNPMIAAAYAEMIFGFLQD RANKESGSEPVLIVELGAGAGRFAYHVLHELCQLRDYAGISLPPFRYIMTDLAMNNVMAW KEHPALQSFITEGLLDFAQFDAVHDTVLNLVVSGTTISEGALKQPVIIVANYFFDGIPQE LIYVSEGQIYEADVDVEYPENQDSLKPSEWLDQITLHYEHRRAPEYEQDTYPYRDVISIY QEQLEDSHILFPAAGITCLQRLNSLSQKGFLLITADKGDHLLENWKFAEPPELVLHGSFS LTANYHALLHFFEQRGAEALFPPHHYKNINVGCILHLDKPIDYPNMRLAYRRCIERFGPD EFFSMKGWVDRNLDRMRLEQILSFWRLGGYDAEFFIQSTKQISSLLQDASDEEKQDLLRG IELMWSSYYVMEQRYDLALDAGLILFEMDMYEHSKRYLEISVEEEQDEVVSTVFYCLAIC CFELELVEDALGYMRKLLELEPDHEEALALISHFDKP >gi|333604167|gb|AFDH01000112.1| GENE 248 286915 - 287553 196 212 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_2787 NR:ns ## KEGG: GYMC10_2787 # Name: not_defined # Def: pentapeptide repeat protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 212 1 212 212 279 64.0 4e-74 MSKKQFIARWNDAQIAEANRALAAVTGKSNLHKKERLFPSSPFGQTAAGLEDFRGVELTE TIQYLTVQGVDLSYARFAEAASLNTSTFTNCGFNMIKLDSRYVTREFSRCSFRGAKLNNA RISERFEDCDFTGSNLSKAIANDVSFIRCRFSDVNFRGAMFMYCRFEECSFEGAVFHNGS LAGSRFTGETDLLPVWGNTILDGVKVNGERLA >gi|333604167|gb|AFDH01000112.1| GENE 249 287625 - 288446 373 273 aa, chain + ## HITS:1 COG:all0345_1 KEGG:ns NR:ns ## COG: all0345_1 COG0789 # Protein_GI_number: 17227841 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Nostoc sp. PCC 7120 # 1 114 21 135 135 90 44.0 2e-18 MLKISDFSKLSGVSVKALRFYNRLKLLEPAAIDPANGYRYYAQKQLLTVKRITAFKEHGF TLDQIKHFLDEDAIPDVKLKLVDKKKELERSILEAQQQLNEINNRITRVEEADNRRQETP ITVRNVQPQLMASIRDIVPRTHLCLLLDELTRYVNSYGEDEGRDLTILWHDPNNSDTEQA DLEVAVPLTKAIPSNGRVNVRLMPELKAAASLVHLCNPYDNFCLAADQLVSWISSQGYVR SSKEPIRETYLTSDKDIYGKMRLAELLIPLELG >gi|333604167|gb|AFDH01000112.1| GENE 250 288516 - 289280 525 254 aa, chain + ## HITS:1 COG:AGl3471 KEGG:ns NR:ns ## COG: AGl3471 COG1028 # Protein_GI_number: 15891852 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 2 254 3 257 257 233 50.0 3e-61 MKRLEGKIALVTGGSRGIGKAISLRLAQEGALVIVHYGSRRAAGEEVVRAIEAQGGRALA LGANLETFAGVTDLVQTMEQTLLRLTGQNRIDILVNNAGIGTSKTLEETTEEDFDAIFAV NVKAPFFLVQQSLQLLRDGGRIINTSSGVTRIAYPHIMAYNLTKGAINTFTLHLAKLLGP RGITVNAVLPGIVDTDVNAEWLHTPEGQQHAAEMSALGRVGEPSDIADIVAFLSSSDARW VTGQMVDATGGSHL >gi|333604167|gb|AFDH01000112.1| GENE 251 289541 - 290611 630 356 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_6189 NR:ns ## KEGG: Pjdr2_6189 # Name: not_defined # Def: NAD-dependent epimerase/dehydratase # Organism: Paenibacillus # Pathway: not_defined # 6 356 4 354 354 635 86.0 0 MKPEETVSRKTALVIGANGVIGGNLIQHLMTLPEWDIIGVSRRGGEDTPQVRYVAVDLLN EEDTRDKLGNLTEVTHIFYAAYQDRPTWAELVPPNLAMLVNTVNAIEPIAPKLQHISLMQ GYKVYGAHLGPFKTPAKETDAHHMPPEFNVDQQQFLEQRQPGSKWTWSALRPSVVCGFAL GNPMNLAMVIAIYASMSKELGLPLRFPGKPGAYHSLLEMTDAGLLARATVWAATDERCAN QAFNITNGDLFRWNELWPKIAAFFELETAPPLPMSLDVVMADKETLWNTMVEKYDLAKNS FQDVSSWRFGDFVFSWDYDFFADGTKARRFGFHDFIDTEQMFMDIFEDFRKRKVIP >gi|333604167|gb|AFDH01000112.1| GENE 252 290678 - 291049 268 123 aa, chain - ## HITS:1 COG:BS_ytcD KEGG:ns NR:ns ## COG: BS_ytcD COG1733 # Protein_GI_number: 16079955 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus subtilis # 5 123 3 121 126 151 62.0 3e-37 MQETEKTYNTAVEATLEVIGGKWKPVILFHLTFGKKRNGELMHLMPAVTQKVLTQQLKEL VEDGIVSRISYNQMPPRVEYELTDYGWGLKGILHLMCRWGDMHIEKVYGDRGRVLFEPPQ SDE >gi|333604167|gb|AFDH01000112.1| GENE 253 291318 - 291620 65 100 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKSKDGLMFQWDAFNLQAVLGENQAFQSLIVPSHYYYINPQEVNPISYNIAQLYTQFAND LRKNTYTTPDFQTGCRLHYLLDQIIKSAETGTVQYLTVEE >gi|333604167|gb|AFDH01000112.1| GENE 254 292603 - 292983 197 126 aa, chain + ## HITS:1 COG:BS_ytcD KEGG:ns NR:ns ## COG: BS_ytcD COG1733 # Protein_GI_number: 16079955 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus subtilis # 4 108 1 105 126 135 61.0 1e-32 MKDIANRTYNIPVEATLDVIGGKWKTLIICHLTYGPKRTNELSKNMPAITHKMLTQQLRE LEENGIVIRTVYNQVPPKVVYELSELGWSLKPLLTFMCDWGEKYIQELSRKELPPQTTTT SRGDEL >gi|333604167|gb|AFDH01000112.1| GENE 255 293285 - 294448 789 387 aa, chain + ## HITS:1 COG:CAC3158 KEGG:ns NR:ns ## COG: CAC3158 COG0133 # Protein_GI_number: 15896406 # Func_class: E Amino acid transport and metabolism # Function: Tryptophan synthase beta chain # Organism: Clostridium acetobutylicum # 9 387 3 389 394 465 58.0 1e-131 MIQEHLNEGYFGEFGGSFVPPELQEVLDYLSTQFNKYKDDPEFNEEFRYYLREYVGRENP LTYVKQLTDAWGGAKIYLKREDLNHTGAHKINNVIGQILLAKRMGAKRVIAETGAGQHGV ATATACAMFNMDCVIYMGAEDTRRQALNVFRMELLGATVVPVNKGQGRLKDAVDEALSDL VQNYQNTFYLLGSAVGPHPFPTMVKHFQSIVSEESKRQILEKEGRLPDAVLACVGGGSNA IGAFAHYLDEPSVRLIGVEPDQAATLTQGVPSLIHGFKCLVLLDEQGNPKPTYSIAAGLD YPGIGPEHSHLKVTGRAEYVTISNEEVLAAFQELSRTEGIIPALESAHAVAYAKNLAPTM SKDQIIIINLSGRGDKDVEQVFHMLKK >gi|333604167|gb|AFDH01000112.1| GENE 256 294600 - 295214 237 204 aa, chain - ## HITS:1 COG:no KEGG:CCV52592_0510 NR:ns ## KEGG: CCV52592_0510 # Name: not_defined # Def: hypothetical protein # Organism: C.curvus # Pathway: not_defined # 1 198 1 197 209 127 37.0 3e-28 MQQLFNDLIKQDVKPFLSKHGFAKKSLNFSKTTDGLIYLFNFQKSSGNSADNVMFYVNCG IYSAELAQIQSKEILTAPQEVECHFRARIKEIARAVPDRFAITPDTNRDDLRKTLLSGLE EVIHFYETMTSARSIVDYYISGPFLHLGEESFHLLLQSNDAAAAKRYLKALHEKYGAENR WTLFENKYKAIFDKYGVEFDTIRS >gi|333604167|gb|AFDH01000112.1| GENE 257 295304 - 296002 236 232 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLLKDTDQMDDLKEFLIDWYGKHESSYGVPVGELPAYLPKALHELYAFAGRWKDGSDDHL ENSPEIFQQQDCLYSVERVKREGDKITFLEENQANWTCQVEAGNNNSPVYCDERLLWDDH AEGHIIVNDSLYHFLKSFCLQEVVFGCKHLYIVEGKLDPIQMLFDKPIEDVWLNGYYISP KEEKSTHSFYRCGDVLVMERYGDFWLGSNRDLPAALNDEALSSIKLRKIKPD >gi|333604167|gb|AFDH01000112.1| GENE 258 296022 - 296192 160 56 aa, chain - ## HITS:1 COG:no KEGG:Aflv_1611 NR:ns ## KEGG: Aflv_1611 # Name: not_defined # Def: hypothetical protein # Organism: A.flavithermus # Pathway: not_defined # 1 56 18 73 171 100 87.0 2e-20 MSYIVDFKDVSTVGLESSPVAEALAGLRANEARYFMNKYKHEFTVVPASESQETLD Prediction of potential genes in microbial genomes Time: Sun Jul 17 10:26:05 2011 Seq name: gi|333604165|gb|AFDH01000113.1| Paenibacillus sp. HGF7 contig00253, whole genome shotgun sequence Length of sequence - 856 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 855 407 ## COG1020 Non-ribosomal peptide synthetase modules and related proteins Predicted protein(s) >gi|333604165|gb|AFDH01000113.1| GENE 1 3 - 855 407 284 aa, chain - ## HITS:1 COG:BS_ppsC_2 KEGG:ns NR:ns ## COG: BS_ppsC_2 COG1020 # Protein_GI_number: 16078893 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Non-ribosomal peptide synthetase modules and related proteins # Organism: Bacillus subtilis # 19 280 1031 1301 1505 179 38.0 7e-45 TVEAISYAAQKSALAEQYEQDEVSGIVPLTPIVREFASWNLPKPYHFNQDMLMEIELEEE KQLRKVLDALTAHHDILRSVYRQGQLEIVKVSDSKAYELKVYDYSEEQAATELMEAACTD LHSSIHLEEGPLVKAAMFRTVAGNLLFLGIHHLVVDGVSWRILQEDISTAIRQVKEGTKI QFPAKTASYKAWAEALAEYKDSHLLQKERPYWEQVAAQMAAGELRMDEQTGESGYGSCTI HLNKEETAQLIHQAGRAYNTEINDLLISALGMAVRKLTGARDVT Prediction of potential genes in microbial genomes Time: Sun Jul 17 10:26:06 2011 Seq name: gi|333604163|gb|AFDH01000114.1| Paenibacillus sp. HGF7 contig00249, whole genome shotgun sequence Length of sequence - 1630 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 1627 251 ## COG1020 Non-ribosomal peptide synthetase modules and related proteins Predicted protein(s) >gi|333604163|gb|AFDH01000114.1| GENE 1 1 - 1627 251 542 aa, chain - ## HITS:1 COG:BS_ppsD_1 KEGG:ns NR:ns ## COG: BS_ppsD_1 COG1020 # Protein_GI_number: 16078892 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Non-ribosomal peptide synthetase modules and related proteins # Organism: Bacillus subtilis # 185 538 4 346 1050 239 35.0 1e-62 MEGHGREPVHKRIDIDRTVGWFTSIYPVVVPCQEDIAESIITTKEMLRKIPNRGLGYGLL QEQLPVRPLEIMFNYMGQMDAEAKGRKLHFFSSGKGSADENTVFRKIIVNGGILDGTLQL VIGYNRSYLSSDRMQSFSERYMAALLAVKDHCIAIKESVRTPSDYRAAYLSRTDLTVIQQ AVGGSSQVERIYGLTSLQKGMLYHSIAEPESTAYRNQNIFIGQGYADEHMVKQALKLLAI RHEVLRTAIIHKDLSMPKQVVIREREVEYERTDLTGVEATVQAEMVEAIAHDQIQRGFDL AQDPLLRVHHVVLSKDGYQLIWNFHHIIMDGWCLSTVYGEFNRLYKALQKGALTSDLKEQ VIKDKQDQTSYEDYIEWLEKQDHEQGLSYWSDVLAGYEEVAEIKPVHTPQESEEQVQRLA ITLTPEDRLRIKELTSAHQMTVSNVVETAWGVVLQAYSGQKDVVFGKVTSGRQSDVRGIE DIVGLFINTIPVRVTSKEGMSVMRLLKEMQQQASESEQYAYCSLAEIQAQTEQKQHLIQV LY Prediction of potential genes in microbial genomes Time: Sun Jul 17 10:26:07 2011 Seq name: gi|333604153|gb|AFDH01000115.1| Paenibacillus sp. HGF7 contig00034, whole genome shotgun sequence Length of sequence - 8866 bp Number of predicted genes - 9, with homology - 2 Number of transcription units - 7, operones - 2 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 6 - 65 4.6 1 1 Tu 1 . + CDS 278 - 454 63 ## 2 2 Tu 1 . - CDS 2276 - 3226 121 ## Aaci_3115 type IV secretory pathway VirB4 protein-like protein 3 3 Tu 1 . - CDS 4749 - 5249 -249 ## 4 4 Op 1 . - CDS 5363 - 5710 78 ## 5 4 Op 2 . - CDS 5721 - 6143 59 ## COG1988 Predicted membrane-bound metal-dependent hydrolases - Prom 6350 - 6409 3.8 6 5 Tu 1 . + CDS 6000 - 6218 159 ## - Term 6208 - 6252 4.5 7 6 Op 1 . - CDS 6476 - 7300 363 ## - Term 7328 - 7365 6.4 8 6 Op 2 . - CDS 7371 - 7589 78 ## - Prom 7799 - 7858 4.8 - Term 8038 - 8078 -0.4 9 7 Tu 1 . - CDS 8126 - 8224 106 ## - Prom 8297 - 8356 7.4 Predicted protein(s) >gi|333604153|gb|AFDH01000115.1| GENE 1 278 - 454 63 58 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKMSANLEDQRSLLQHSIPEPVQLYELNHSPRAENLSGPQVHPRQHPLSVQQAVQLTA >gi|333604153|gb|AFDH01000115.1| GENE 2 2276 - 3226 121 316 aa, chain - ## HITS:1 COG:no KEGG:Aaci_3115 NR:ns ## KEGG: Aaci_3115 # Name: not_defined # Def: type IV secretory pathway VirB4 protein-like protein # Organism: A.acidocaldarius # Pathway: not_defined # 1 302 493 797 802 152 30.0 1e-35 MLQLPFDIKMLKFIRGENTRFSPFKLGTVEDARAMMDITFNPKSEDDKETVINLAVERLY KNGCLDMNGFYQALMDIANKSPQEYLKEIAFKIAQKVQLMEQHEIGEFMFGTGDNDSFNA QFIIAVTRDLTMPARNHERSTWTESQRYSVAIMYAVASLGLRKLMKLPRHILKFLSIDEK WVLDLFEQGVRLQNEALRFSRSENMIPIFASQNPTDHYSIEQKEDTTGLFAWKFMLHLES STQVQAAMELLGMQDEYSSVWDQKFADYSKGKGMCRDPEGRIAEIQVEVVPQILMKYFDS NPDNSKIKHEQFSYVF >gi|333604153|gb|AFDH01000115.1| GENE 3 4749 - 5249 -249 166 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLTLILWIPCTLFIGNLLIQFIPISSYLIGLSASGFISYRLGKLDPAGKFMIQFLSDYLK YRFRSKVHDGFERRRRTKNHPQPVYFNLDFTLIEGNRIGSFPAEGHVQFIELKTEASISV DKYGLVTINDKGDLLPPGSYDIKDGGITEKSVPPKIMPIPSSLPRK >gi|333604153|gb|AFDH01000115.1| GENE 4 5363 - 5710 78 115 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKLKIFALFSVVFFSLASIGYAADELTTGIAPLDGAVKLFLRILGVIFLAVMGKNLLTMF IKHEYAKLIPWLIFSVIVGWVLLDMESFVRTFKALISGVSGNVGGNGTGGAGGGK >gi|333604153|gb|AFDH01000115.1| GENE 5 5721 - 6143 59 140 aa, chain - ## HITS:1 COG:BS_yvsG KEGG:ns NR:ns ## COG: BS_yvsG COG1988 # Protein_GI_number: 16080388 # Func_class: R General function prediction only # Function: Predicted membrane-bound metal-dependent hydrolases # Organism: Bacillus subtilis # 13 103 65 156 160 58 41.0 3e-09 MIPGALQNIGVRHRTFTHSLLMMYLLSLLTLPVPDVIKWSLLIGYASHPILDLFNVEGVE LLWPIPWRFRISPVGITTDSVVETAFRTCLVIISVFFFVFLFQKSAQSIPVLGPLSRTVW TTFMNFLPQGAISVLNKILY >gi|333604153|gb|AFDH01000115.1| GENE 6 6000 - 6218 159 72 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MAGIADKQRPFDHIRNGQREKAQQVHHQQGMGKSSMPHSYILKSPRDQGNTLAYKGLGLV YIRGRTGEVPSK >gi|333604153|gb|AFDH01000115.1| GENE 7 6476 - 7300 363 274 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIRKLSNKLIWILVILAALGGVGQIMNLFPRGEESSSLAAEPISNWDTTLAQRFSREWLT LSKDMTLEQRKKQLKRFFPDFEMKDWVQPSKSQTVKEIYVLEVNRKSDQYSVVTIDAWCE ISDSPDLRHISLNVPVRRTDTGALIDGEPVILPPYDTGKRSDRNAKEVTPEMYETADPFI ASFMSNYLSAKKAADLSNMVSNNADVEPMGNFVEYQKIAKSKIYVLDEKQNQYEAVLTVI VKDPVTLSLFPQQFMVDFNRNENGKYEIYKVWRH >gi|333604153|gb|AFDH01000115.1| GENE 8 7371 - 7589 78 72 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKPYLNTQDDADNVFVIDCIEEFLEQWNQYYSSKLHMDFEGYIHRNVKNGLLGPDKLFFL LKDETELIQRVK >gi|333604153|gb|AFDH01000115.1| GENE 9 8126 - 8224 106 32 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKKNHTSLQVAQLVLLSCNFLIGLLNFIFKYN Prediction of potential genes in microbial genomes Time: Sun Jul 17 10:28:01 2011 Seq name: gi|333603965|gb|AFDH01000116.1| Paenibacillus sp. HGF7 contig00129, whole genome shotgun sequence Length of sequence - 192779 bp Number of predicted genes - 182, with homology - 155 Number of transcription units - 110, operones - 43 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 2 - 1187 1088 ## GYMC10_6047 transglutaminase domain protein 2 1 Op 2 . - CDS 1195 - 2217 981 ## GYMC10_6048 hypothetical protein 3 1 Op 3 . - CDS 2269 - 3666 1361 ## COG3669 Alpha-L-fucosidase - Prom 3709 - 3768 4.0 + Prom 3659 - 3718 4.7 4 2 Tu 1 . + CDS 3833 - 6094 2310 ## COG2207 AraC-type DNA-binding domain-containing proteins + Term 6301 - 6349 14.2 5 3 Op 1 14/0.000 - CDS 6460 - 8070 2062 ## COG1653 ABC-type sugar transport system, periplasmic component 6 3 Op 2 1/0.182 - CDS 8107 - 8676 601 ## COG0395 ABC-type sugar transport system, permease component 7 3 Op 3 7/0.045 - CDS 8378 - 9016 179 ## COG0395 ABC-type sugar transport system, permease component 8 3 Op 4 . - CDS 9036 - 10004 1027 ## COG4209 ABC-type polysaccharide transport system, permease component + Prom 10197 - 10256 2.1 9 4 Tu 1 . + CDS 10349 - 11638 1588 ## COG3669 Alpha-L-fucosidase + Term 11664 - 11696 -0.5 - Term 11923 - 11966 11.5 10 5 Op 1 . - CDS 11999 - 12229 84 ## 11 5 Op 2 . - CDS 12190 - 12813 610 ## COG0546 Predicted phosphatases - Prom 12904 - 12963 2.8 - Term 12854 - 12894 9.1 12 6 Op 1 2/0.091 - CDS 12975 - 14249 1326 ## COG0673 Predicted dehydrogenases and related proteins 13 6 Op 2 14/0.000 - CDS 14264 - 15880 1826 ## COG1653 ABC-type sugar transport system, periplasmic component 14 6 Op 3 7/0.045 - CDS 15947 - 16828 1168 ## COG0395 ABC-type sugar transport system, permease component 15 6 Op 4 1/0.182 - CDS 16844 - 17815 1117 ## COG4209 ABC-type polysaccharide transport system, permease component - Prom 17866 - 17925 8.0 - Term 18100 - 18137 3.1 16 7 Tu 1 . - CDS 18170 - 19198 978 ## COG1609 Transcriptional regulators - Prom 19386 - 19445 3.9 + Prom 19292 - 19351 3.4 17 8 Tu 1 . + CDS 19384 - 19938 543 ## COG1396 Predicted transcriptional regulators + Term 19970 - 20005 -0.0 + Prom 20027 - 20086 8.3 18 9 Op 1 9/0.045 + CDS 20153 - 21199 1046 ## COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases 19 9 Op 2 . + CDS 21218 - 22396 1356 ## COG0156 7-keto-8-aminopelargonate synthetase and related enzymes + Term 22404 - 22451 4.0 + Prom 22398 - 22457 5.9 20 10 Tu 1 . + CDS 22605 - 23171 178 ## + Term 23191 - 23232 8.2 - Term 23179 - 23220 8.2 21 11 Op 1 . - CDS 23349 - 24299 727 ## COG2378 Predicted transcriptional regulator 22 11 Op 2 . - CDS 24374 - 24718 232 ## - Prom 24761 - 24820 4.0 - Term 24851 - 24903 13.1 23 12 Tu 1 . - CDS 24978 - 26135 1253 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases - Term 26190 - 26228 9.1 24 13 Op 1 36/0.000 - CDS 26274 - 27077 937 ## COG1177 ABC-type spermidine/putrescine transport system, permease component II 25 13 Op 2 30/0.000 - CDS 27074 - 27940 1078 ## COG1176 ABC-type spermidine/putrescine transport system, permease component I 26 13 Op 3 7/0.045 - CDS 27944 - 29038 1248 ## COG3842 ABC-type spermidine/putrescine transport systems, ATPase components 27 13 Op 4 . - CDS 29061 - 30170 248 ## PROTEIN SUPPORTED gi|167854980|ref|ZP_02477755.1| 50S ribosomal protein L13 - Prom 30245 - 30304 6.7 + Prom 30198 - 30257 2.3 28 14 Tu 1 . + CDS 30399 - 31196 818 ## COG1414 Transcriptional regulator + Term 31199 - 31247 15.0 - Term 31193 - 31229 6.5 29 15 Op 1 1/0.182 - CDS 31319 - 31519 276 ## COG2608 Copper chaperone 30 15 Op 2 . - CDS 31559 - 31954 462 ## COG1937 Uncharacterized protein conserved in bacteria - Prom 32109 - 32168 8.4 + Prom 32012 - 32071 8.2 31 16 Tu 1 . + CDS 32244 - 33236 1028 ## COG1230 Co/Zn/Cd efflux system component + Term 33375 - 33408 5.5 - Term 33363 - 33396 5.5 32 17 Tu 1 . - CDS 33466 - 33591 188 ## - Prom 33819 - 33878 3.6 + Prom 33770 - 33829 4.5 33 18 Op 1 . + CDS 33869 - 34672 780 ## COG0789 Predicted transcriptional regulators 34 18 Op 2 . + CDS 34734 - 35786 385 ## GYMC10_3861 hypothetical protein + Term 35792 - 35816 -0.3 35 18 Op 3 . + CDS 35873 - 36607 749 ## gi|237721108|ref|ZP_04551589.1| predicted protein - Term 36502 - 36534 -0.9 36 19 Tu 1 . - CDS 36597 - 37289 874 ## BCAH187_A0527 hypothetical protein - Prom 37334 - 37393 1.6 - Term 37420 - 37454 7.4 37 20 Op 1 . - CDS 37457 - 38800 1522 ## COG0534 Na+-driven multidrug efflux pump 38 20 Op 2 . - CDS 38804 - 39619 824 ## COG3739 Uncharacterized integral membrane protein - Prom 39681 - 39740 3.5 + Prom 39738 - 39797 3.4 39 21 Tu 1 . + CDS 39837 - 40904 857 ## COG1609 Transcriptional regulators - Term 40853 - 40895 -0.6 40 22 Tu 1 . - CDS 41031 - 41807 824 ## COG0500 SAM-dependent methyltransferases - Prom 41895 - 41954 4.1 - Term 41906 - 41956 5.7 41 23 Tu 1 . - CDS 41967 - 42233 269 ## gi|167461255|ref|ZP_02326344.1| hypothetical protein Plarl_01633 - Prom 42269 - 42328 2.9 - Term 42336 - 42371 6.3 42 24 Op 1 . - CDS 42402 - 42797 356 ## - Prom 42829 - 42888 3.0 - Term 42872 - 42902 3.0 43 24 Op 2 . - CDS 42974 - 44362 1670 ## COG0534 Na+-driven multidrug efflux pump - Prom 44443 - 44502 3.0 - Term 44489 - 44536 7.1 44 25 Tu 1 . - CDS 44569 - 46464 2080 ## COG2766 Putative Ser protein kinase - Prom 46512 - 46571 2.8 + Prom 46621 - 46680 4.5 45 26 Tu 1 . + CDS 46720 - 47835 957 ## COG5482 Uncharacterized conserved protein - Term 47805 - 47845 10.7 46 27 Op 1 . - CDS 47871 - 49388 785 ## Cthe_1452 KWG repeat-containing protein - Prom 49419 - 49478 4.6 - Term 49506 - 49547 3.0 47 27 Op 2 . - CDS 49550 - 49702 110 ## - Prom 49722 - 49781 5.1 + Prom 50142 - 50201 3.8 48 28 Tu 1 . + CDS 50385 - 50480 61 ## + Prom 50512 - 50571 3.4 49 29 Tu 1 . + CDS 50751 - 50900 118 ## 50 30 Tu 1 . - CDS 51169 - 51828 45 ## BBR47_17370 hypothetical protein - Prom 51975 - 52034 1.9 51 31 Tu 1 . - CDS 52061 - 52888 171 ## Deipr_2234 hypothetical protein - Term 53360 - 53413 3.3 52 32 Tu 1 . - CDS 53526 - 53684 164 ## - Prom 53715 - 53774 4.9 - Term 53830 - 53877 7.2 53 33 Tu 1 . - CDS 53887 - 54531 614 ## - Prom 54702 - 54761 3.9 - Term 54769 - 54804 1.1 54 34 Tu 1 . - CDS 54838 - 55833 946 ## COG0492 Thioredoxin reductase - Prom 55883 - 55942 4.2 - Term 55899 - 55931 2.6 55 35 Tu 1 . - CDS 56023 - 56604 448 ## COG1309 Transcriptional regulator - Prom 56823 - 56882 6.5 + Prom 56751 - 56810 6.2 56 36 Tu 1 . + CDS 56870 - 58315 926 ## COG0477 Permeases of the major facilitator superfamily + Term 58322 - 58361 6.1 - Term 58448 - 58491 10.1 57 37 Op 1 14/0.000 - CDS 58505 - 59806 1810 ## COG1653 ABC-type sugar transport system, periplasmic component - Prom 59850 - 59909 3.2 58 37 Op 2 38/0.000 - CDS 59948 - 60784 1029 ## COG0395 ABC-type sugar transport system, permease component 59 37 Op 3 . - CDS 60785 - 61663 994 ## COG1175 ABC-type sugar transport systems, permease components - Prom 61694 - 61753 2.0 60 38 Op 1 7/0.045 + CDS 61783 - 63753 2036 ## COG2972 Predicted signal transduction protein with a C-terminal ATPase domain 61 38 Op 2 . + CDS 63750 - 65381 1722 ## COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain + Prom 65383 - 65442 5.8 62 38 Op 3 . + CDS 65469 - 65567 161 ## + Prom 65621 - 65680 3.8 63 39 Tu 1 . + CDS 65738 - 66769 508 ## COG1680 Beta-lactamase class C and other penicillin binding proteins 64 40 Tu 1 . - CDS 66823 - 67239 359 ## Clos_1149 hypothetical protein - Prom 67276 - 67335 7.3 - Term 67317 - 67373 16.2 65 41 Tu 1 . - CDS 67419 - 67679 181 ## COG2002 Regulators of stationary/sporulation gene expression - Prom 67751 - 67810 2.9 + Prom 68732 - 68791 3.3 66 42 Op 1 . + CDS 68863 - 69021 59 ## 67 42 Op 2 . + CDS 69031 - 69093 60 ## + Term 69282 - 69325 2.0 - Term 70065 - 70105 9.1 68 43 Tu 1 . - CDS 70196 - 70660 375 ## COG0219 Predicted rRNA methylase (SpoU class) - Prom 70681 - 70740 5.0 + Prom 70690 - 70749 3.8 69 44 Tu 1 . + CDS 70802 - 71515 640 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain + Term 71554 - 71591 9.4 - Term 71683 - 71717 6.1 70 45 Tu 1 . - CDS 71759 - 72847 1236 ## COG1932 Phosphoserine aminotransferase - Prom 72953 - 73012 5.2 + Prom 72776 - 72835 4.3 71 46 Tu 1 . + CDS 72987 - 73559 464 ## COG1514 2'-5' RNA ligase + Term 73566 - 73602 7.8 72 47 Tu 1 . + CDS 73950 - 75047 1124 ## COG4362 Nitric oxide synthase, oxygenase domain + Term 75168 - 75211 6.7 + Prom 75329 - 75388 4.8 73 48 Tu 1 . + CDS 75494 - 76645 470 ## + Term 76664 - 76702 6.3 74 49 Tu 1 . - CDS 76619 - 76807 101 ## - Prom 76935 - 76994 2.1 + Prom 76655 - 76714 2.0 75 50 Op 1 . + CDS 76843 - 78504 1637 ## GYMC10_2817 GerA spore germination protein 76 50 Op 2 . + CDS 78497 - 79603 1205 ## Pjdr2_3142 spore germination protein 77 50 Op 3 . + CDS 79584 - 80816 1153 ## Pjdr2_3143 germination protein, Ger(X)C family 78 50 Op 4 . + CDS 80847 - 81032 160 ## + Prom 81061 - 81120 3.2 79 51 Tu 1 . + CDS 81257 - 82462 1063 ## Pjdr2_4491 hypothetical protein + Term 82581 - 82623 14.2 + Prom 82600 - 82659 6.0 80 52 Op 1 7/0.045 + CDS 82683 - 83207 175 ## PROTEIN SUPPORTED gi|167856514|ref|ZP_02479226.1| 50S ribosomal protein L1 81 52 Op 2 . + CDS 83244 - 84011 606 ## COG0791 Cell wall-associated hydrolases (invasion-associated proteins) + Term 84031 - 84061 5.0 + Prom 84140 - 84199 2.0 82 53 Tu 1 . + CDS 84227 - 85363 1008 ## BBR47_41740 hypothetical protein + Term 85372 - 85417 3.2 - Term 85432 - 85468 9.6 83 54 Tu 1 . - CDS 85508 - 86314 818 ## PPE_02201 hypothetical protein - Prom 86401 - 86460 2.5 + Prom 86360 - 86419 3.5 84 55 Tu 1 . + CDS 86539 - 86640 134 ## + Term 86674 - 86719 15.3 - Term 86662 - 86707 15.3 85 56 Op 1 4/0.091 - CDS 86749 - 87978 1021 ## COG4102 Uncharacterized protein conserved in bacteria 86 56 Op 2 . - CDS 87995 - 89305 1302 ## COG5267 Uncharacterized protein conserved in bacteria - Prom 89369 - 89428 4.4 - Term 89387 - 89439 11.5 87 57 Tu 1 . - CDS 89471 - 90895 1468 ## COG0174 Glutamine synthetase - Prom 90967 - 91026 4.6 - Term 91043 - 91082 3.1 88 58 Tu 1 . - CDS 91129 - 92172 1118 ## COG2876 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase - Prom 92288 - 92347 5.3 - Term 92290 - 92329 9.1 89 59 Op 1 . - CDS 92370 - 92924 543 ## BBR47_40750 hypothetical protein 90 59 Op 2 . - CDS 92957 - 93910 430 ## PROTEIN SUPPORTED gi|227371337|ref|ZP_03854821.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; SSU ribosomal protein S1P 91 59 Op 3 40/0.000 - CDS 93956 - 95476 1685 ## COG0642 Signal transduction histidine kinase 92 59 Op 4 7/0.045 - CDS 95477 - 96166 901 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 96227 - 96286 3.0 - Term 96296 - 96343 14.1 93 60 Tu 1 . - CDS 96366 - 97976 1807 ## COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain - Prom 98004 - 98063 7.3 - Term 98129 - 98158 1.1 94 61 Tu 1 . - CDS 98206 - 98619 576 ## Pjdr2_4784 hypothetical protein - Term 98922 - 98954 2.0 95 62 Op 1 19/0.000 - CDS 98972 - 99634 677 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 96 62 Op 2 7/0.045 - CDS 99631 - 100668 1071 ## COG4585 Signal transduction histidine kinase 97 62 Op 3 . - CDS 100681 - 101706 849 ## COG4758 Predicted membrane protein - Prom 101737 - 101796 3.6 - Term 101803 - 101843 8.0 98 63 Tu 1 . - CDS 101883 - 102584 744 ## COG3584 Uncharacterized protein conserved in bacteria - Prom 102615 - 102674 4.9 + Prom 102649 - 102708 3.2 99 64 Tu 1 . + CDS 102799 - 104295 1784 ## BSU09390 integral inner membrane protein + Term 104315 - 104356 7.3 - Term 104303 - 104344 7.3 100 65 Tu 1 . - CDS 104402 - 105262 1070 ## COG2514 Predicted ring-cleavage extradiol dioxygenase - Prom 105334 - 105393 3.8 - Term 105435 - 105459 -0.3 101 66 Tu 1 . - CDS 105492 - 107426 2055 ## COG0441 Threonyl-tRNA synthetase - Prom 107446 - 107505 1.5 102 67 Tu 1 . - CDS 107790 - 108764 977 ## Pjdr2_4793 sporulation protein YtxC - Prom 108794 - 108853 6.4 + Prom 108890 - 108949 3.9 103 68 Op 1 40/0.000 + CDS 109113 - 109814 682 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 104 68 Op 2 . + CDS 109804 - 111642 1223 ## COG0642 Signal transduction histidine kinase + Term 111698 - 111747 15.1 - Term 111686 - 111735 14.3 105 69 Tu 1 . - CDS 111775 - 112908 1162 ## COG1060 Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes - Prom 113006 - 113065 8.0 - Term 113084 - 113153 12.3 106 70 Op 1 5/0.045 - CDS 113176 - 114333 1204 ## COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases 107 70 Op 2 1/0.182 - CDS 114330 - 115499 1225 ## COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases 108 70 Op 3 . - CDS 115538 - 116482 970 ## COG1897 Homoserine trans-succinylase - Prom 116711 - 116770 4.1 + Prom 116971 - 117030 6.0 109 71 Tu 1 . + CDS 117214 - 117459 212 ## GYMC10_5107 magnesium and cobalt transport protein CorA 110 72 Tu 1 . - CDS 117380 - 117700 115 ## - Prom 117931 - 117990 3.0 + Prom 117558 - 117617 2.6 111 73 Tu 1 . + CDS 117695 - 118153 472 ## COG0598 Mg2+ and Co2+ transporters + Term 118185 - 118244 20.4 - Term 118171 - 118232 21.2 112 74 Op 1 . - CDS 118249 - 120249 1444 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 - Prom 120275 - 120334 6.4 113 74 Op 2 . - CDS 120470 - 121498 1054 ## Pjdr2_1417 HRDC domain protein - Term 121536 - 121589 5.4 114 75 Tu 1 . - CDS 121658 - 122536 738 ## BBR47_10520 hypothetical protein - Prom 122655 - 122714 3.4 + Prom 122632 - 122691 1.8 115 76 Tu 1 . + CDS 122723 - 122827 121 ## + Prom 123061 - 123120 5.1 116 77 Op 1 . + CDS 123147 - 123440 289 ## Pjdr2_1416 hypothetical protein 117 77 Op 2 . + CDS 123514 - 123777 238 ## GYMC10_1692 hypothetical protein + Term 123859 - 123910 10.0 - Term 123847 - 123896 11.2 118 78 Op 1 . - CDS 123920 - 124309 607 ## COG3766 Predicted membrane protein 119 78 Op 2 . - CDS 124306 - 124980 674 ## GYMC10_2024 hypothetical protein 120 78 Op 3 . - CDS 124977 - 126182 899 ## COG0754 Glutathionylspermidine synthase 121 78 Op 4 . - CDS 126182 - 127150 784 ## GYMC10_2022 hypothetical protein 122 78 Op 5 . - CDS 127176 - 127391 313 ## GYMC10_2021 hypothetical protein - Prom 127494 - 127553 5.7 - Term 127568 - 127610 7.1 123 79 Op 1 . - CDS 127758 - 128663 1008 ## COG0258 5'-3' exonuclease (including N-terminal domain of PolI) - Prom 128683 - 128742 5.1 124 79 Op 2 . - CDS 128761 - 132033 3205 ## COG5542 Predicted integral membrane protein - Prom 132073 - 132132 3.6 125 80 Op 1 . - CDS 132257 - 133429 1316 ## gi|167464264|ref|ZP_02329353.1| hypothetical protein Plarl_17184 126 80 Op 2 . - CDS 133429 - 134565 997 ## PPSC2_p0508 DNA sulfur modification protein DndB 127 80 Op 3 . - CDS 134663 - 135856 963 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase 128 80 Op 4 . - CDS 135887 - 136960 1095 ## COG1994 Zn-dependent proteases 129 80 Op 5 . - CDS 137009 - 137365 411 ## COG1393 Arsenate reductase and related proteins, glutaredoxin family 130 81 Op 1 . - CDS 137718 - 138671 927 ## COG0564 Pseudouridylate synthases, 23S RNA-specific 131 81 Op 2 1/0.182 - CDS 138698 - 139267 495 ## COG2096 Uncharacterized conserved protein - Prom 139287 - 139346 4.2 132 82 Op 1 2/0.091 - CDS 139445 - 141127 1208 ## COG1492 Cobyric acid synthase 133 82 Op 2 1/0.182 - CDS 141130 - 142245 888 ## COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase 134 83 Op 1 3/0.091 - CDS 142422 - 143270 740 ## COG0368 Cobalamin-5-phosphate synthase 135 83 Op 2 1/0.182 - CDS 143255 - 144358 943 ## COG1270 Cobalamin biosynthesis protein CobD/CbiB 136 83 Op 3 2/0.091 - CDS 144368 - 144916 505 ## COG2087 Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase 137 83 Op 4 1/0.182 - CDS 144961 - 146010 1176 ## COG2038 NaMN:DMB phosphoribosyltransferase - Term 146044 - 146070 1.7 138 84 Op 1 35/0.000 - CDS 146087 - 146872 272 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 139 84 Op 2 33/0.000 - CDS 146872 - 147909 1100 ## COG0609 ABC-type Fe3+-siderophore transport system, permease component 140 84 Op 3 . - CDS 147910 - 148917 1204 ## COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component 141 85 Tu 1 . + CDS 148965 - 149126 66 ## + Term 149207 - 149247 0.3 142 86 Tu 1 . - CDS 149429 - 149899 497 ## PPE_01397 hypothetical protein - Prom 149952 - 150011 2.6 143 87 Op 1 . - CDS 150059 - 150319 222 ## 144 87 Op 2 3/0.091 - CDS 150390 - 151586 1326 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase 145 87 Op 3 . - CDS 151599 - 152090 577 ## COG1522 Transcriptional regulators - Prom 152163 - 152222 6.2 - Term 152285 - 152317 -0.5 146 88 Tu 1 . - CDS 152458 - 152766 265 ## - Prom 152801 - 152860 8.4 - Term 153220 - 153259 -0.9 147 89 Tu 1 3/0.091 - CDS 153320 - 154246 820 ## PROTEIN SUPPORTED gi|148988856|ref|ZP_01820271.1| 50S ribosomal protein L9 148 90 Tu 1 . - CDS 154340 - 155671 1251 ## COG0477 Permeases of the major facilitator superfamily - Term 155791 - 155830 -0.6 149 91 Op 1 . - CDS 155897 - 156415 339 ## GYMC10_5122 hypothetical protein 150 91 Op 2 . - CDS 156436 - 156516 86 ## 151 91 Op 3 . - CDS 156574 - 156993 328 ## COG3766 Predicted membrane protein - Term 157019 - 157061 5.2 152 92 Op 1 . - CDS 157089 - 157763 927 ## COG1842 Phage shock protein A (IM30), suppresses sigma54-dependent transcription 153 92 Op 2 . - CDS 157733 - 157852 59 ## 154 92 Op 3 . - CDS 157886 - 160264 2612 ## COG1193 Mismatch repair ATPase (MutS family) - Prom 160316 - 160375 3.4 + Prom 160314 - 160373 2.4 155 93 Tu 1 . + CDS 160522 - 160887 502 ## PPE_01386 hypothetical protein + Term 160903 - 160949 11.4 + Prom 160972 - 161031 4.1 156 94 Tu 1 . + CDS 161056 - 161424 467 ## COG1622 Heme/copper-type cytochrome/quinol oxidases, subunit 2 + Term 161458 - 161520 4.0 - Term 161415 - 161456 3.4 157 95 Tu 1 . - CDS 161635 - 162210 729 ## - Term 162383 - 162411 1.0 158 96 Op 1 . - CDS 162426 - 162932 450 ## COG1286 Uncharacterized membrane protein, required for colicin V production 159 96 Op 2 . - CDS 162974 - 168196 5432 ## COG3468 Type V secretory pathway, adhesin AidA - Prom 168283 - 168342 4.2 - Term 168290 - 168337 11.0 160 97 Op 1 40/0.000 - CDS 168376 - 170826 2622 ## COG0072 Phenylalanyl-tRNA synthetase beta subunit 161 97 Op 2 . - CDS 170851 - 171885 1242 ## COG0016 Phenylalanyl-tRNA synthetase alpha subunit - Term 172286 - 172327 2.1 162 98 Op 1 12/0.000 - CDS 172333 - 172647 428 ## COG2076 Membrane transporters of cations and cationic drugs 163 98 Op 2 4/0.091 - CDS 172647 - 172994 426 ## COG2076 Membrane transporters of cations and cationic drugs 164 98 Op 3 . - CDS 173038 - 173607 693 ## COG1309 Transcriptional regulator - Prom 173636 - 173695 6.3 165 99 Op 1 . + CDS 173646 - 173780 66 ## 166 99 Op 2 . + CDS 173777 - 174718 989 ## COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) + Term 174735 - 174771 5.4 167 100 Tu 1 . - CDS 175067 - 176056 959 ## COG0180 Tryptophanyl-tRNA synthetase - Prom 176188 - 176247 3.7 + Prom 176345 - 176404 3.9 168 101 Tu 1 . + CDS 176434 - 176976 571 ## pE33L466_0421 hypothetical protein + Term 177001 - 177053 14.1 - Term 176995 - 177034 10.0 169 102 Op 1 . - CDS 177197 - 179155 2101 ## Dred_3168 hypothetical protein 170 102 Op 2 . - CDS 179242 - 180465 1297 ## Moth_2225 hypothetical protein - Prom 180492 - 180551 1.9 - Term 180587 - 180622 3.3 171 103 Op 1 40/0.000 - CDS 180624 - 181736 1192 ## COG0642 Signal transduction histidine kinase 172 103 Op 2 . - CDS 181773 - 182465 886 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 182561 - 182620 4.3 - Term 182582 - 182626 6.7 173 104 Op 1 . - CDS 182657 - 183637 1285 ## COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component 174 104 Op 2 . - CDS 183717 - 183908 105 ## + Prom 183772 - 183831 3.9 175 105 Tu 1 . + CDS 184012 - 184806 961 ## BCE_2249 hypothetical protein + Term 185025 - 185059 2.5 + Prom 185010 - 185069 4.7 176 106 Tu 1 . + CDS 185110 - 186303 1251 ## COG2311 Predicted membrane protein + Term 186515 - 186558 10.7 - Term 186498 - 186551 12.5 177 107 Op 1 . - CDS 186557 - 188209 1704 ## COG2372 Uncharacterized protein, homolog of Cu resistance protein CopC 178 107 Op 2 . - CDS 188260 - 188667 399 ## COG4911 Uncharacterized conserved protein - Prom 188895 - 188954 4.0 + Prom 188805 - 188864 4.1 179 108 Tu 1 . + CDS 188899 - 189774 914 ## COG0384 Predicted epimerase, PhzC/PhzF homolog + Term 189840 - 189883 8.2 - Term 189695 - 189728 1.6 180 109 Op 1 . - CDS 189902 - 191635 1670 ## COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain 181 109 Op 2 . - CDS 191674 - 192051 399 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 192146 - 192205 6.2 - Term 192177 - 192209 0.7 182 110 Tu 1 . - CDS 192251 - 192547 303 ## Cbei_4075 hypothetical protein - Prom 192656 - 192715 4.8 Predicted protein(s) >gi|333603965|gb|AFDH01000116.1| GENE 1 2 - 1187 1088 395 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_6047 NR:ns ## KEGG: GYMC10_6047 # Name: not_defined # Def: transglutaminase domain protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 57 388 7 338 872 521 71.0 1e-146 MNANTNENPNRNNKPVKNRNEAEKPNVNLLENDCLKANLNADLEVDRNAALHPDLSVFSM DAEALAEVQRKFNIKREFARAKEEELFGVFRQKLTEEEAWALKFLFAYMPLNDLADYDGA LFLNHVRTTLEIRAKVPWGRRVPDRLFLHFVLPLRVNSENLEDCRGVLYEELAERTKHLP MEKAILETNYWCHEKATYVGSDLRTISPLTMLRSAQGRCGEESTLAVSALRSIGIPARQC YTPRWAHCDDNHAWVEAWADGQWHYIGACEPEPALDRGWFSAPARRAMLVNTRVHANYPG PEPVTLAEEWLTEINLLETYAPVRTVNVAVKDEEGRPVEGARVLFQLYNMAELYPIAVLT TDSEGLAVFRTGWGDLLVRAVKDGLWGEEKLSAAG >gi|333603965|gb|AFDH01000116.1| GENE 2 1195 - 2217 981 340 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_6048 NR:ns ## KEGG: GYMC10_6048 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 340 1 341 341 527 74.0 1e-148 MALSGVPEPRITFAPKHYLCRRASGPLELDGRIDKPFWEAADWTEDFTDIEGDAKPQPSK RTRVKMLWDDRYFYFAAELMEDQIWATLTERDSVIFYDNDFEIFIDPDGDTHEYYEFEMN ALNTVWDLLLVKPYRDGGPPVNGWDIGGLKTAVHIDGELNNPDADNRKWTLEVAMPWSAL RECAPENRPPVQGEFWRVNFSRVQWRTETSDGSYRKMIDPNTGNPYPEDNWVWSPMGIVN MHYPELWGYVVFADGDGPESFALPDDERVKWELRKLYYRQRNHYEQSGVFISDVNELLGC EPWNIVPQVETTARSFQICAASADGKAVYVIREDGKLWKE >gi|333603965|gb|AFDH01000116.1| GENE 3 2269 - 3666 1361 465 aa, chain - ## HITS:1 COG:TM0306 KEGG:ns NR:ns ## COG: TM0306 COG3669 # Protein_GI_number: 15643075 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-L-fucosidase # Organism: Thermotoga maritima # 31 400 9 388 449 139 31.0 1e-32 MSEMNAETQEGAPAAVVEGVHNYSREEDWVKPDDPVLLERLEWFRDQKLGLMMHWGPYSQ LGVVESWALSDADADWSRDGIDWDVSAEELKREYFGLNRTFNPLRFQPELWAGLAADSGF KYLNFTTKHHDGFCMWDTRTTDYRATHPDCPFHVHRHADICGRLFDAFRAKGLAISAYFS KADWRSPYYWAPGMERGGRTSRGTSYDTKEHPWLWEQFVKFTHEQIGELMTRYGRIDMLW LDAGWVNAANNQDIRLGEAVEKARELQPWLLCADRTVGGPYENLITPEQTLPERPLLVPW ESCITMGTSFSFRYEDTYKTVRQLVHLLVEIVAKGGNLALNVGPQPDGRLPETAVARMKG LGAWLKVNGEAIYGTRICEPYGSGSWRFTRKGEAVYAFCLVEREQSPMEAEMCIPLRDSF ARVELLDGYIPLDYRLTEKGITVRLPESVREKEAPEAIVFRLSGK >gi|333603965|gb|AFDH01000116.1| GENE 4 3833 - 6094 2310 753 aa, chain + ## HITS:1 COG:BH0483 KEGG:ns NR:ns ## COG: BH0483 COG2207 # Protein_GI_number: 15613046 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Bacillus halodurans # 257 749 257 769 769 90 23.0 8e-18 MKSDYFKSKLFMRYIWSYLFILLIPLAFATIFIYRSAVSNLQSEIEQSHLNQLNQTKTII DGRVKELTEIASRISYDERLTLYKVHDPYYSREAISALDNYKATSSIIGDLFLYYHDDDK IYSSFGMSGLDVFSDKYSFHNWTQDGLRQDLNTLKFPKMRPADLVSQPTSLQQSILAYLV PITPNSPAPHGTVMYFIPESELTGLIDSILGSYHGLTYIFDNNGQVLTNNGNEESLTAGD LGALFKLPPGIHNQALNGQSHSVVSVKSDKNGWTYVTLMPSAQFFSSVLHVRSFIILLVS IVVIVGAALALLLARMQYLPISNLVHFASSKSRSSRTSGNELERIRISLQEHSTRADLQE PYARNHALLMLLKYGQTKSLSADLLEAFDLKFDHDRHFAMVIGFDKRSHLHDSKDDWQTM IQLFAEVDFPGLAAKAYSVELPQPNQLALVVGFDPAGAGQTPPFGQMHQIVEGIRTHLLE LFDASPVIGVGTAYTSHAHLNQSYIEACSAFESNILTVHGSVTFFEKLSSTPERSTFWIP GNVLLKLSQSLKQGSYDVSEQTLQEALKNLPAAGLSAPHLRLIHYDILTTLLKTASELGI QGLTQDVLSKLNFNSSEELEAICLNLAARICSQVERDRTKEEHSLMDRIVGYIDKHFMEH TLSLEVVSAEYGISPSYLSRTFKEKTGINFIQYIWQKRMNEVMHQLKTTNDPLKEIIVRV GYLDTPNFIRKFKKETGYTPGQYRTLNTSGEHA >gi|333603965|gb|AFDH01000116.1| GENE 5 6460 - 8070 2062 536 aa, chain - ## HITS:1 COG:SP1796 KEGG:ns NR:ns ## COG: SP1796 COG1653 # Protein_GI_number: 15901625 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Streptococcus pneumoniae TIGR4 # 14 529 13 533 538 165 28.0 2e-40 MKKVLKSGSLMLGLTLVIAGLSACGSADKAGEAGTGKNASEVKKDGFPIVDKPMTMTLMA PDVGVQDWNKMQVMQEMEKLTGIKMQYQNAPIDSFDSKKNLVFASDSLPDVFFGADIKPA EQVTYGSQGVLLPLENLIDNYAPNLKKILDEHPEIRKNMTTPSGHIYALRTIDLSAVWYR GPMWYNGKFLKALGMTKLPETTEELYTYLKRVQDEDPNGNGKKDEVPLTSVKLDDLRMFF LGFWGIYDEVVYADKAGKVHYTPQEEGYKGYLTFLNRLWKDNLLDHETFSQTDEQKKAKG KNNRVALFSDYYPYFTLGTEPDESNPMMKPVKSEVPDSPVYGKHPGISSNGTFAITKSNP SPEAAMRWVDYMYGYEGGTLFAQGPEDVLWKYTDKEKHVKEWKPVPGGGDREEYRGTLTP NYGILVPGAASSELSKGLKTDFDKWIDKENEEKLTPIAKIPFPSVFLTEEEQAEVTRLKS DLDTYVKQMEAKFVTGQEPLANWDAYAGQLKKMGSDKIAGIYQAAYDRWNQGSEKK >gi|333603965|gb|AFDH01000116.1| GENE 6 8107 - 8676 601 189 aa, chain - ## HITS:1 COG:SP1797 KEGG:ns NR:ns ## COG: SP1797 COG0395 # Protein_GI_number: 15901626 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 4 189 126 305 305 184 52.0 9e-47 MGMFMVTMFFGGGLVPTYLLVKGLGLMNSMWAIILPSAASIWNIIVSRTFFQTSIPKELQ EAAQIDGCTNMRMFLKIILPLSMPIVAVMALFYGVGNWNSYFSALIYLHEESKYPLQLIL RQILVLQEMSAQTGGSLDASTASALNNKAEIAALVKYAVIIVSTLPIIAIYPFLQRYFVQ GVMIGSVKG >gi|333603965|gb|AFDH01000116.1| GENE 7 8378 - 9016 179 212 aa, chain - ## HITS:1 COG:AGl3561 KEGG:ns NR:ns ## COG: AGl3561 COG0395 # Protein_GI_number: 15891903 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 11 113 11 113 293 85 37.0 9e-17 MSSTVKDTARDKLFLISTYVYVAIALILVAYPLVYILSASISNPKYVGSGEMWLFPKGLT FEGYQIVFANTKIWMGYANTILYTVVGTAVNLLVTIPAAYALSRKDFVGRNFFYGHVYGD DVFRRRPCAHVPARQGSRAHEQHVGDHSAFCGVHLEHHRVEDVFSNLYSEGTARSGPDRR LHEYADVSENHPAAFDAHRGCHGAILRSRQLE >gi|333603965|gb|AFDH01000116.1| GENE 8 9036 - 10004 1027 322 aa, chain - ## HITS:1 COG:AGl3564 KEGG:ns NR:ns ## COG: AGl3564 COG4209 # Protein_GI_number: 15891904 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type polysaccharide transport system, permease component # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 32 322 19 309 309 283 48.0 3e-76 MQAKASIRTAGTAGRPKAGTERKPVWKRMVLNWELYVFIAPAFLYFLIFHYGPMYGILIA FKNFIPTKGIWGSPWVGFDHFVHFFESYYFWDLLWNTLSISLYDLAVGFPIPILLALAFN EVRDGFFKRMVQTVTYAPHFISVVVMAGMIITFLSPSTGILVHLIEKLGFEAPQVLTDPN WFKTMYVFSGVWQSAGWGTIIYLAALSGVDPQLHEAAIIDGASRFQRIRHINIPTIVPTM TILLILNMGSLFGVGFEKILLLQNPLNMEASDVISTFVYRSGLVNAQYSFSAAVGLFNSI VSAILLVTVNQIVRRTSENSLW >gi|333603965|gb|AFDH01000116.1| GENE 9 10349 - 11638 1588 429 aa, chain + ## HITS:1 COG:TM0306 KEGG:ns NR:ns ## COG: TM0306 COG3669 # Protein_GI_number: 15643075 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-L-fucosidase # Organism: Thermotoga maritima # 2 320 20 358 449 170 34.0 4e-42 MVQQWFEDAKLGIFIHYGIYAVNGIAESWSFYNGRISYEDYMKQLGGFTARNFDADKWAD LIEKSGAKYAVLTTKHHDGVALWDTQASDLNVVKSTPAGRDIIREYADAVTRRGIRLGLY FSLIDWSHPDYPSVYEGGRVPEEPGRANPFSSPADGVQDEEKWQRFLTFNNEQLRELLTN YGKVDLLWFDGDWERSAEQWNLPAFKNYLLSFNPAIMINSRLQGHGDYKTPEQGLPITRP EGPWEFCTTINSSWGYVPDDNHYKSLHQIIRMFCDCISMGGNMLLDIGPKEDGTVDPRQE QILLGLGSWIRTHEEAVYGTREGILTRYYLGGSTLSKDKKTLYLFVYDDPKESVCLKGLS SKIRTITVLHSGKELTYDIHGGVPWFQIPGTTWIHLTPEDTHDYVTVLKIELEDELDMYG GSGAVVTHN >gi|333603965|gb|AFDH01000116.1| GENE 10 11999 - 12229 84 76 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MPYARAVGGGFAVDYRDKRERISRQSPGPGAEAAISAQADASAAAEAAAAWAHGAAKGER NRNRNGARMEADEDRD >gi|333603965|gb|AFDH01000116.1| GENE 11 12190 - 12813 610 207 aa, chain - ## HITS:1 COG:alr4944 KEGG:ns NR:ns ## COG: alr4944 COG0546 # Protein_GI_number: 17232436 # Func_class: R General function prediction only # Function: Predicted phosphatases # Organism: Nostoc sp. PCC 7120 # 2 207 3 209 212 164 39.0 1e-40 MEPILIFDFDGTIVDSKGLAVQLFNELAVKFGGRRIEEAEIGRLSGLSVPDRLKALHVPL FKLPALLLEAKRNYKQAAVNLQPADGMKELLLALKEQGRTMGILSSNTAENIRHFLDLHG LEMFDFVHSATNLFGKDKAIRGMLRAHSLPADRIIYVGDELRDVEACRRAGVRAAAVTWG FDSEELLAGAGPDYVCRTPEQLAAVLR >gi|333603965|gb|AFDH01000116.1| GENE 12 12975 - 14249 1326 424 aa, chain - ## HITS:1 COG:DR1362 KEGG:ns NR:ns ## COG: DR1362 COG0673 # Protein_GI_number: 15806379 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Deinococcus radiodurans # 8 402 9 398 403 260 39.0 3e-69 MSELTAILIGAGARGAGGYAPYALDYPHELQFVAVAETDAERREKMAEKHGIPAEHRYDT WEELLNLPKMADIAVICTQDRMHYEPTMRALAAKYHVLLEKPMSPDPRECLDMEQAARDN DRLLTICHVLRYTPFWTAVKTAITEGRIGEVVSIQLNENVGYWHIAHSFVRGNWNNSHKA SPMILAKSCHDMDVLSWLMDKPCSRVSSFGSLMHFNGAHAPEGSADRCLDCAVEPTCPYS ATRFYLSREFRGWAGHFTSDLSKESIVKGLRETDYGRCVYRSDNNVVDHQVVNMEFEGGA TAMFSMCGFTFEQERRIQIMGTRGELRAEGDSIIVYDFLTHQKTEITIPVQTAGHGGGDS GIVRSFLQEVRTYSGQEGLTSAAASVRSHLMAFAAEESRLNGGAPIELTEYARTLAQNAG GLSG >gi|333603965|gb|AFDH01000116.1| GENE 13 14264 - 15880 1826 538 aa, chain - ## HITS:1 COG:SP1796 KEGG:ns NR:ns ## COG: SP1796 COG1653 # Protein_GI_number: 15901625 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Streptococcus pneumoniae TIGR4 # 1 534 1 533 538 183 27.0 8e-46 MKRKRAMKLVLACALTTAVLSGCSSGGEKGAGEAAEAKGVNATGFPIVQEPVTVNAFAAK FFANADWNKLKLWQEYEKKTNIHINWETVQKDALKEKRNLLMASSGYPDLFYASAFSKSD LFKYGKQGVFLPLNDYIDQYAPNLKALMEKYPVIKKGITMPDGKIYSLPTLYDPEFRSVF FNTPWVKTEWLTKLGLKEPENLDEFAAMLKAFKQGDPNGNGKPDEIAWGGVGTTGIVGYL RGSFGLGNHGNANLYVDTEPDSGKIRFIPADPRYKEMLEYIHKLYKDGLLEQDIASVKSE EVDAKGTAGLLGIVDNVDPAAIYNQKGYAGLPVLKGPHGDQLYTYIGSPLGNIGMFILTD KAKNPAAMVRWMDYFYGEEGIKMFFMGWKDDTYKEESDGTVDYVDAIKNNKDGLSLDQAV SQYLIWPGGYYPGFVKQAYFKGAEGLPTSVANSKKADPHVLKPEEIWPAFNFTTEEQQEL TTLANDIETYVTEMKDKFIVGDAPLSQWDDYVATLNKMGLDRYKQIYQAALDRYSKSS >gi|333603965|gb|AFDH01000116.1| GENE 14 15947 - 16828 1168 293 aa, chain - ## HITS:1 COG:BS_lplC KEGG:ns NR:ns ## COG: BS_lplC COG0395 # Protein_GI_number: 16077779 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Bacillus subtilis # 1 293 7 295 295 246 43.0 4e-65 MENTREDRLFNTVIYLVLGLVLLIVLYPLVFVLSASFSEPQYIMNGEVLLWPKGLTLDSY TKIFEDGQIMRGFGNTLLYTTTGTCLNVIMTILAAYPLSRKDFVGRNLFMGLFVFTMFFS GGLIPTYILIKNLGLLNSFWVMILPGAVSIWNIIIMRTFFQQTIPGELEEAATIDGCSNM QILTRVILPLSMPIIAVTILFYAVGHWNSFFNALLYLSDKSKFPLQLVLREILIQGQTDS LVKMSTESAIKQQRAVEGIKYAVLVLANLPMFLLYPFLQRYFVKGIMIGAIKG >gi|333603965|gb|AFDH01000116.1| GENE 15 16844 - 17815 1117 323 aa, chain - ## HITS:1 COG:SP1798 KEGG:ns NR:ns ## COG: SP1798 COG4209 # Protein_GI_number: 15901627 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type polysaccharide transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 22 318 6 300 305 273 47.0 4e-73 MAETILKRSGPETGAHPRPVPRKLTLGRRILRNWQLYLLISPVVLYYIVFHYVPMYGLQI AFKDFVANKGIWGSAWVGFDHFQRFFNSYFFQRLITNTIGLGLYTLALGFPIPIILALLM NEVQSQKFKKFVQTVTYAPHFLSTVVVVGMMMMFLNPRYGLVNTFLGMFGVKPINFLADP SWFKTLYVLSDVWQTMGWSSIIYLAALAGVDNQLHEAARVDGATRLQRIWHINLPGIRPT IVILLILNLGSVMSIGFEKVLLMQNTLNMQSSDIIDTYVYRSGILDADYSFSAAVGLFST VINFILLISVNWISKRFSGSSLW >gi|333603965|gb|AFDH01000116.1| GENE 16 18170 - 19198 978 342 aa, chain - ## HITS:1 COG:BH3692 KEGG:ns NR:ns ## COG: BH3692 COG1609 # Protein_GI_number: 15616254 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus halodurans # 1 335 1 332 337 143 30.0 4e-34 MTRLKDIADVIGVSISTVSRAISNDTSRPVSEETKRKIREAALKLGYPLDDTPGAAASRT QIACVIPGKLLGNHPYFSEVLQGFHGKMAEMGQPAAIVRTFEEVNDAERFQAMLTESGAR GVLALGWYDKELHELLEQQGIPILGVSLNDDSLRMPIVDCDRVSAARMAVGHLLDQGHTK IGYVGGPAFFRKLENDERFIGFQFAMHQGNLPIRKEWIVNTNWDVDLSYRLVTAMLQELP RADWPTAMFCASDMLAIPAMRAALEQQCRIPEDIAFVGMDNIGFSQYTSPPLTSIDVPRQ EIGKLAAKFLCDYVEEDYRIPPRILLPCSLIVRESSVHDIRP >gi|333603965|gb|AFDH01000116.1| GENE 17 19384 - 19938 543 184 aa, chain + ## HITS:1 COG:BH2909 KEGG:ns NR:ns ## COG: BH2909 COG1396 # Protein_GI_number: 15615472 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus halodurans # 4 182 6 184 189 174 48.0 7e-44 MDNMVERVAGNLKKIRRSRGLSLDKLAELTGVSKTMLAQIERAESNPTITILWKIAHGLH ISVSALIEDEKPSVTLVKKSELFPMSSEEGKYTAYPLFPYDGSSRFEIYSVELQPGCEYE SDPHHEGVEEYVSVTRGTLEMQIGEQVIVAENGDAIRFHADQSHIYRNSTDEVVHIQSVI LYPF >gi|333603965|gb|AFDH01000116.1| GENE 18 20153 - 21199 1046 348 aa, chain + ## HITS:1 COG:PAB2382 KEGG:ns NR:ns ## COG: PAB2382 COG1063 # Protein_GI_number: 14521586 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Threonine dehydrogenase and related Zn-dependent dehydrogenases # Organism: Pyrococcus abyssi # 1 345 1 345 348 335 47.0 8e-92 MTQTMVGLVKAHRKAGAVLMEVPVPECGPDEVLIRVKASSICGTDMHIYHWDDWAEQHVV TPNVFGHEFAGVVHEVGSQVSSVRVGDYVSAEGHIVCGMCKQCRSGNAHVCPHTRSFGIT APGCFADYAVTKAVNIIPNDRSLPFELACLQDPLGNAVQSVLSGDIVGKSVVVMGVGPIG LMAVQVAKAAGAGKIIAVDLNAYRLDMARKLGADATIQSSPAVSAPERIREMTGGEGAEV GLEMSGNARAINDLLEAMSPGGRVSLLGIPAHSVPIDLSRHVIFKGLQVHGITGRRMYNT WHQIKGLLDQNRIDLQPLVQHTFTLDRYEEAFDLMASGQCAKVVFTHI >gi|333603965|gb|AFDH01000116.1| GENE 19 21218 - 22396 1356 392 aa, chain + ## HITS:1 COG:BS_kbl KEGG:ns NR:ns ## COG: BS_kbl COG0156 # Protein_GI_number: 16078763 # Func_class: H Coenzyme transport and metabolism # Function: 7-keto-8-aminopelargonate synthetase and related enzymes # Organism: Bacillus subtilis # 4 391 5 392 392 469 60.0 1e-132 MSGLDYLAEELEQLKREGRYRLPAVWESGSDVWMELNGRRVLQLSSNNYLGFANHPDLKR AAADAVYRYGAGSGSVRTIAGTLKIHDELERELAAFKGTEAALVFQSGFTTNLGVFSTLL QDGDVVISDELNHASIIDGIRLSKAARKIYRHKDMNALEDVLRASGQYRKRFIVTDGVFS MDGDIAPLPAIVELAERYDAIVCVDDAHASGVLGRNGKGSTDHFNLHGRVHIQIGTLSKA IGVVGGYAAGSQALKEVLIHKARPFLFSTSHPPSVAASCLEAIRVLRSSSELVERMWSHA HGFRKALIQAGFDTGASETPIIPIIIGDAAATMHFSNRLLEEGVFAQGIVFPTVAADKGR IRLIITAAHSQDDLDFALEALKKVGRETGLIS >gi|333603965|gb|AFDH01000116.1| GENE 20 22605 - 23171 178 188 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MDYKSENLKRMETKMAMLNPVLYKTCECMHKLALEEFSNLIDDDEEVMFFSAGSLEKGDL ITGLIFVTNKRFALCVKALSTTLDQFYYDQITSIDYKKTWYGQGIIEINSYSEKIHFYYN DPGSLISVIKYVREKMYETNQQKNVQQPIHFQPVDVVDQLEKLARLKNQGILSQEEFDVQ KTKLLSRL >gi|333603965|gb|AFDH01000116.1| GENE 21 23349 - 24299 727 316 aa, chain - ## HITS:1 COG:FN1249 KEGG:ns NR:ns ## COG: FN1249 COG2378 # Protein_GI_number: 19704584 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Fusobacterium nucleatum # 3 315 13 312 314 93 24.0 4e-19 MMDKVIRLFHIILAIQANPGISASDIARKCGINPRTVYRDLATLSLIAPITNDGRGTGYR FMGKFFLYPLNFTEQEALVFSMLPSVLDTEKLPPGFDQAYHKVMATHGKEKSHHRDIVQN ITDIIQMGAPAYRQEHPNFLETIICAILDQKTISTVYHTMSRNKTTERNIDPYYLVPRER RFYLIGYCHLKREVRTFRMSRFQQVEVTGQAFEKGDFNIRQYLKNTWSIERGDKNMTFKV KFNAEVARYVKEEELFVHPRMRDRKDGSLIFEVTVNNEREFLNWVMQYGPAAEILEPKAV REKLKQQLNQWVELYK >gi|333603965|gb|AFDH01000116.1| GENE 22 24374 - 24718 232 114 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLDVGVICEELGLRKDYIENVVKKNGGMKPGAQEAEDGQEDGEEDEQDKDKKDTDKAKER KQKRSWDKRKAGSKGWSSDRSNDRSQVKEIPQPCPKTGDGSPEASSGFLFLWKK >gi|333603965|gb|AFDH01000116.1| GENE 23 24978 - 26135 1253 385 aa, chain - ## HITS:1 COG:BH0352 KEGG:ns NR:ns ## COG: BH0352 COG0624 # Protein_GI_number: 15612915 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Bacillus halodurans # 13 380 8 373 374 271 44.0 2e-72 MSDVTLVEKYMPELLRLLEESVNMDSPSRNKALCDRMADWYEIQFRRLTGGTVTRLPHEV AGDRLLCEWGAGSRRILLLGHYDTVWPEGEASRRPYGVRGGRALGPGVYDMKLGLLQAMF ALKLLGDEGRGPAEDVTVVLLINSDEEISSPSSRGLIEQTARGCEAVFVLEPPMEPEGAL KTGRKGSGRYKLIVEGIAAHAGVDPSKGVSAIEELAHQIQHLHGLTDYGIGTTVNVGIVH GGIGTNVVADRAEAEIDVRVKTSAEAERVHALIAGLRPHLPGARLRIEGRMMRPPMERTD AIARLYGLARRIAADELGFELGETATGGVSDGNFTAACGVPTLDGLGARGDFAHSPDEYV RLDEIAPRTALLARLIETVAAGERR >gi|333603965|gb|AFDH01000116.1| GENE 24 26274 - 27077 937 267 aa, chain - ## HITS:1 COG:YPO2841 KEGG:ns NR:ns ## COG: YPO2841 COG1177 # Protein_GI_number: 16123036 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component II # Organism: Yersinia pestis # 15 240 30 255 282 172 41.0 9e-43 MIKRIPWLGIVTFIVLLFVISPLLVIIPTSLTSANYLSFPPEGFSLKWYEKILDRPEFIE SFIFSLELAALSAVLSTIIGTLAAMAIHKYKFPGSGFVNALLLSPLTVPSIIIGMAALLF FTRIGLAGTFTGLLITHMLISIPYVVRLTMTGLSAYDYTLERAAYILGASPFQVFRDITL PLLRPAILSGMIFSFLTSFDNVTVSLFLVSPETTTLPMAIFSYMQETLNPLVASVSSVVI LLSLVFIFILERVYGLDKLFGTNSHSH >gi|333603965|gb|AFDH01000116.1| GENE 25 27074 - 27940 1078 288 aa, chain - ## HITS:1 COG:mll6253_1 KEGG:ns NR:ns ## COG: mll6253_1 COG1176 # Protein_GI_number: 13475227 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component I # Organism: Mesorhizobium loti # 12 282 19 287 340 141 32.0 2e-33 MQAKSSRFRRLSSWTGLFLLAPSLIVLLGAFLIPMIYILLQSLQDAEQQFSLHNYLLFVQ DSYYAGILWRTIKLSLYTVLLTLILGYPVALFMSKASGKMRGLVTFLIISPHLISVVIRN FGWVVILGDKGWVNSSLIKLGLIDKPLKLLYNELGVVIGLTDSFIVYMVLALATSLYAVD QSLYKAAGILGASKARSFFSITLPLSLPGIFAGTTLVFSLSMSAFVTPALMGGSSVKVMP VITYEKIMATLDWPLGSALAFLMLASTYALVTVFTKIVETKRYREVFS >gi|333603965|gb|AFDH01000116.1| GENE 26 27944 - 29038 1248 364 aa, chain - ## HITS:1 COG:SMc01608 KEGG:ns NR:ns ## COG: SMc01608 COG3842 # Protein_GI_number: 15965973 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport systems, ATPase components # Organism: Sinorhizobium meliloti # 7 358 4 350 353 320 47.0 3e-87 MEKRIDVELKAVRKTFGSNVVVDNFDLQIEKGECISFLGPSGCGKTTTLNMIAGFLDPDG GEISIKGKRMNGVPSNKRDLGMVFQTYSLFPHMTVAENVAYGLKLRKMPKAEIKDKVRKV LELVKLPHVADRYPKQLSGGQRQRIAIARALVIEPSLLLLDEPLSNLDAKLREELREELK RLHKETGVTTIFVTHDQEEALYLSDRIVVLDHGKVEQIGTPWDIYNRPASEFVHTFIGKS NRLPGTVRGSANGGMAVQTDAGFVLEASADGRTFTTGESVVAYVRPEKIRLTEPGALADT VRAAGTIRQLAFLGSFVECEVEVGSALLTVRMQMQDGLADYTAGQQVGLTWNPKDVFVFP RKEQ >gi|333603965|gb|AFDH01000116.1| GENE 27 29061 - 30170 248 369 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|167854980|ref|ZP_02477755.1| 50S ribosomal protein L13 [Haemophilus parasuis 29755] # 58 354 38 331 346 100 26 6e-20 MKKKIGVLVSVAALCGSLLAGCGSSKEPAKEAAVSPGASTSALQPEKELVVAGNGATVEE LMKDEIFKRFKAKYPDIKLTYVSGVSTEIVAKAKAVKNDPQTDVAIIEGGEQEIGRKEGL FEPLKEADIPNMKNVIADLKVAEDSGVAVNFTPMGISYNEAIVKEKNLPIPESWNDLARP EMKGNLTLTEISSNFGRSALIMLAYANGGSEKNMDPGFEKLKTIAGYMPTFAKSAAQLQQ NLQNKSAAYTSWTMARSIVQKDQGVELKFVVPKEGANLVPNVATMTKNAKHPNAAKLFID FLLTDEVQTLYASKLYYNPATSVKLPEDISKKIEFDRSKIVKFDYETVGGSTAGWIDRFN KEIAPSVGK >gi|333603965|gb|AFDH01000116.1| GENE 28 30399 - 31196 818 265 aa, chain + ## HITS:1 COG:BH2137 KEGG:ns NR:ns ## COG: BH2137 COG1414 # Protein_GI_number: 15614700 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus halodurans # 40 265 22 249 251 133 35.0 3e-31 MSGYSDDMTAWGSLFMEHHLSSVKNSSRLLKEFLDGPKELGVTELSRRLQLSKGAVHKLL ATLESDGFISQNPSTKQYSLGFTLLELGTKVLRDHNLVDFAKPYLQQLAEKTKELACLCV VDGKDAIYVDKIDSQHPIRFNVDAFRRFPLYATSASRVMLAYRPEAFIDSVLADGIRTYT PHSIQSPDEIKERLAAIRSRGYEISTNLRNVGVTGMAAPIRDATGEIVASVSLIGPSDRV VPQQDAFLQQVLLTTRNISFGLGYR >gi|333603965|gb|AFDH01000116.1| GENE 29 31319 - 31519 276 66 aa, chain - ## HITS:1 COG:BS_yvgY KEGG:ns NR:ns ## COG: BS_yvgY COG2608 # Protein_GI_number: 16080404 # Func_class: P Inorganic ion transport and metabolism # Function: Copper chaperone # Organism: Bacillus subtilis # 1 65 1 67 69 59 55.0 1e-09 MEKLTLKVEGMSCQHCVNSVEKAVGGLGAKAQVHLAEGRVEVEYDAGAVKPEQIKEAIEE QGYDVV >gi|333603965|gb|AFDH01000116.1| GENE 30 31559 - 31954 462 131 aa, chain - ## HITS:1 COG:SA1890 KEGG:ns NR:ns ## COG: SA1890 COG1937 # Protein_GI_number: 15927662 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 43 131 7 96 97 98 57.0 4e-21 MVLHSEKDNGSTGGETGIAPLASADAGTSCHTHTRDDDTERRSHHSDKVKNNLISRLNRI EGQIRGVKGMIEKDTYCDDVLNQIAAVQSALNSVGKLLLEGHMKSCVIERIQEGDTDVID ELLVTVNKLMK >gi|333603965|gb|AFDH01000116.1| GENE 31 32244 - 33236 1028 330 aa, chain + ## HITS:1 COG:BS_czcD KEGG:ns NR:ns ## COG: BS_czcD COG1230 # Protein_GI_number: 16079718 # Func_class: P Inorganic ion transport and metabolism # Function: Co/Zn/Cd efflux system component # Organism: Bacillus subtilis # 37 325 1 292 311 270 47.0 2e-72 MSNLKQRKAAGAASGQIHRQDHGHSHDHSHDHEHGGIGHHHGPSSKKGLFIAFLITTGIM VLEFVGGLLTNSLALLSDSGHMLSDAASLLLSLVAMWFAARPASRRRTYGFYRVEILTAM LNGVTLVVLSILIIREAVERFAHPPAIASGTMTLIAVVGLAANLVSAWFLTRMGGAKDNL NIRSAYLHVLGDALGSVGAIIAGLLMQAFQWYQADPIISILVSLLILRSAWGVLKSATHI LLEGVPSRLDADDVRNTLLRIPGVRDIHDLHIWTITSGMDSFSCHLLIDDEADSREVLQQ AVTCMENEYKIRHATIQVETRHLKHAEFSI >gi|333603965|gb|AFDH01000116.1| GENE 32 33466 - 33591 188 41 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTQSKNRKEGLAKSRKQRQNPHGKIRSLKEIAAETHQGIED >gi|333603965|gb|AFDH01000116.1| GENE 33 33869 - 34672 780 267 aa, chain + ## HITS:1 COG:BS_mta KEGG:ns NR:ns ## COG: BS_mta COG0789 # Protein_GI_number: 16080713 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus subtilis # 2 150 3 145 257 90 36.0 3e-18 MYSVGELARKANITVRTLHHYDQIGLLKPSGSTEGGHRLYSDEDVMRLEQISILKKMGLG LKTVHEMLDSYGTDWLSCLEDQLRMVQREKEKLEELEGMLRVTIHSVQIEGTLNWNAMFQ MIRLSQKDPAAKQRFIREHFTAEERKLLHKLPNLNKGDPLTARWTEEVAQARAVMHEDPA SPAAQEVAARITALALEAFDGNEALMNKYWELHGAEENPMNLYPFEPELLEFLNAAFEYY DSTQIAAAVPEPGSSNTINKATNQATN >gi|333603965|gb|AFDH01000116.1| GENE 34 34734 - 35786 385 350 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_3861 NR:ns ## KEGG: GYMC10_3861 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 42 298 61 313 349 113 32.0 2e-23 MKSQPVQKQPKTPPVQLFSSFAPYGLGVLENDSLKPVEARFNEVFGKYARYWDHVKARVL KEHPDISETEYSWIFLEFKRFLAINIYLNNVGMYSTSVDEIWHEALMFTRDYQEFCRDLL GEMIHHSPHVGDALQPGEHDRALFELVYSLVFRFYPENEQLLGKFGQRKLHPEFVAYARA FDWNRIRRDYFKPNTIGIYEDAVQELVRHLFNGIQNAPPAAAAGDSRRMSSAGRTTASSF NASDFSGAGYGALSALLFYSILNGDDDREGSGGNGSGDSDCSSSNCSSSDCGGSSDSNSS GSGSSCSSSSCSGSSDGSSCSSSSSCSSSSCSSSSCSSSSSCSSSSCSSS >gi|333603965|gb|AFDH01000116.1| GENE 35 35873 - 36607 749 244 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|237721108|ref|ZP_04551589.1| ## NR: gi|237721108|ref|ZP_04551589.1| predicted protein [Bacteroides sp. 2_2_4] predicted protein [Bacteroides sp. 2_2_4] # 8 236 6 253 256 67 25.0 1e-09 MKTIEDSYVAFLDILGFKDLVDKNSHLDLQTIFSNDIMHNINRTKKMMDDVNSELGMPSA IQVLSVSDSIIMWTEGTSPVQFVNIVNAAFSALLFFMQRGAPLRGAISKGPVTVHESENQ KNIFGKGITNAYNLENIQQWSGAVIDDICLTEEIVASSEYEILRRKHILVEYLVPFKTGP VEYRHAINWAGLDGRIFYGDYDAIEKQFARHNKSIDDWSVKQKIDHTAAFARFVQSLPKD RVTG >gi|333603965|gb|AFDH01000116.1| GENE 36 36597 - 37289 874 230 aa, chain - ## HITS:1 COG:no KEGG:BCAH187_A0527 NR:ns ## KEGG: BCAH187_A0527 # Name: not_defined # Def: hypothetical protein # Organism: B.cereus_AH187 # Pathway: not_defined # 8 226 11 223 226 169 45.0 7e-41 MGWLWAVQVILFAAGTGLGMSDARRKSTEVRLPLWVRMLISLTLTAAAFALWRDDPASSS KEWIFWGMAWSFIGDLSMAGIIPWRHPMIGGMLTFAVAHVFYIAAFAAALHREGLDLMNA GLAVAAVFYGLVLIAAWLLLIRNPDAPRLFNTGSLVYGLWIGAMASAAAAMAWSLGGALW LTAVGGLLFVVSDTIIGAAAIGGRSLRHQGYWVWLTYVAAQMCIVYAFTL >gi|333603965|gb|AFDH01000116.1| GENE 37 37457 - 38800 1522 447 aa, chain - ## HITS:1 COG:TM0815 KEGG:ns NR:ns ## COG: TM0815 COG0534 # Protein_GI_number: 15643578 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Thermotoga maritima # 8 420 22 433 464 134 26.0 2e-31 MFTNWGMILRLAVPSIVSFAAATLTGTINLMMVGPMGALVIAAVGICNIIMYNAWAACSG IGHTVNYLVAQNFGAGDMKKGVERTYIALYLCLALIAVILAAGWFGSEGILRLMGSSEEL VAAGKEYLELRFYAMAFSVLNFVLFGFLRGIGDTRSPMALTILGNAAMIVFTYGLTYGHL GFPELGLPGAGLAVLIGEAICSIGSVYIVFFRLHDKYRTRTRVKLDRREARLIAGESGKL GMQEFAMSLAMFVFTMFVTRLGTEALAANEIALNVMALGFMPAFAFASTATILVGREVGK HRPDLARRYGTDTAVLGSICLLVLGAVEFVFAVPIARLYSQDPEVYALAADLIRISAFLQ LFDGLLNFYAGGLRGIGDTTFLLGTSLVLSWVFFVPLAYLLTFVWGFGSAGAWISLYAFI AAFGLAVMYRFYRTDWAAVRIKEAEGR >gi|333603965|gb|AFDH01000116.1| GENE 38 38804 - 39619 824 271 aa, chain - ## HITS:1 COG:BS_yoaT KEGG:ns NR:ns ## COG: BS_yoaT COG3739 # Protein_GI_number: 16078935 # Func_class: S Function unknown # Function: Uncharacterized integral membrane protein # Organism: Bacillus subtilis # 8 254 3 251 264 300 65.0 2e-81 MIRSVRHGIRQLLLFGWLEALSCLFPVLIFISLAVLKTANVPHMYDLMLVICLLIQWAMV RTGLETRDEVKVICLFHLIGLALEIYKVNMGSWSYPEEAWTKVWGVPLYSGFMYASVASY LCQAWRRLHVELTRWPSPWFAVPLGAAIYLNFMTHHYIWDLRWVLTVLLFVLFFRTAVLF TVGRKTYRMPLVLSFFLIGFFIWLAENIATFLGAWQYPNQRESWQLVSFGKMSSWFLLVI VSFLIVAQLKRVKQSENKPDGRMVPAAVPEE >gi|333603965|gb|AFDH01000116.1| GENE 39 39837 - 40904 857 355 aa, chain + ## HITS:1 COG:lin0851 KEGG:ns NR:ns ## COG: lin0851 COG1609 # Protein_GI_number: 16799925 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 3 354 2 328 341 146 28.0 7e-35 MSKHVSMQNIADRLGISKYTVSQALSGKDGVSDETRLKIMETARTMGYRKKINKSPAAAG LFQEWDGRRKEITSSSSDPYMLVWIHSAKQQDPFFWPKVIDGLAQTCRDLQAHYMLISVP PHREDELAMPGFLDPARCMGHILLGTFSTRAVISLQQTGLPLVLVDHEEPLVNVDCVVNS NVDAAVAATKQLLREGCDSLVFVGSDSFSVSFRERALGCRIASEEAAESGRSVCLSKWNV PYLSPTWPHDLAVRVGAVSTSELPDGFICANDHIALRLMALLKQRGFDIPGQCRVIGFDN IEAAAASSPALSTVELSKELLGIRAVETLLYRKRHPGRAHEKIVLAPEFIARASG >gi|333603965|gb|AFDH01000116.1| GENE 40 41031 - 41807 824 258 aa, chain - ## HITS:1 COG:all1988 KEGG:ns NR:ns ## COG: all1988 COG0500 # Protein_GI_number: 17229480 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Nostoc sp. PCC 7120 # 6 255 8 258 260 245 47.0 7e-65 MKEAEQGKWDAGHYDTQMHFVSKLGKGVVELLNPAAGESILDLGCGTGSLAHEMALLGAK VTGVDFSETMIEEARQKYPELAFEVGDARTYRSGRTFDAVFSNAALHWVPQADEAARTVA EALRPGGRFAAEFGGFGNVARIERAIHEAVREAGIDPEPRNPWYFPTIGEYTGVLERAGL DVRCAELFDRPTPLPGGEQAIRHWLHAFAGSFFAGIDAATQERITQGVEERLRPALFRDG VWTGDYCRIRVLARKPLG >gi|333603965|gb|AFDH01000116.1| GENE 41 41967 - 42233 269 88 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|167461255|ref|ZP_02326344.1| ## NR: gi|167461255|ref|ZP_02326344.1| hypothetical protein Plarl_01633 [Paenibacillus larvae subsp. larvae BRL-230010] # 1 84 1 84 84 69 41.0 1e-10 MLRSISDTLFLLALILLIVSAIVSGIGFQAFTMRRKDNDPRQIEVPNKQKQLEKQNKGMA GFIRSKITLTAVVFALVSVVLSYLERYV >gi|333603965|gb|AFDH01000116.1| GENE 42 42402 - 42797 356 131 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTFETQGQGTYGQDMYSQGTYSQDIYGQGTYGLQQEWNQNEWSSTEAEEEARKQGEYESP AGYHGGQGGYHWGQGGYHDGGYHGGYHGGHHGGHHGGYPYYPYYPYYPQSYYPYYPPYYN YPPYYPYPYKR >gi|333603965|gb|AFDH01000116.1| GENE 43 42974 - 44362 1670 462 aa, chain - ## HITS:1 COG:mlr1521 KEGG:ns NR:ns ## COG: mlr1521 COG0534 # Protein_GI_number: 13471523 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Mesorhizobium loti # 9 455 9 456 486 421 54.0 1e-117 MAKNEAQMDLTQGPIARKLLLFSLPVLYGNVLQSLNGTVNSIWVGKFLGESAFAATSNAN NVMFLMLSSIFGIGMASTIMIGQSIGAGDTAQAKRVVGASALFFFTLSLVVGLLGVLLSP QILQWMHTPADAMDMANAYLRIIFMSMPFMFCYNMIMTILRGAGDSKTPFRFLVLSIILD IALNPLLIFGWGPIPALGISGSALATGISQLVALVAILGSLYRKKYFLRITREDRHLLRF DGAIIGSLVKKGVPMGLQMIVVSTSSLAMINLVNRFGSEATAAYGAAIQLSSYIQMPAMA IGGAVSSFAAQNVGAGRWDRVHRVTGVGVMYNVLMTGVLVCLIYLFNRSALSLFLPEGQA IEIGMRINLLTLWSFIIFGITFVVSGVVRSTGAVMFPLLITFLALWCVRIPLSYYLADSY GLDAVWWSFPVGFTLGSLLSVAYYFWGNWKKASMLAGGVQKA >gi|333603965|gb|AFDH01000116.1| GENE 44 44569 - 46464 2080 631 aa, chain - ## HITS:1 COG:BH1029 KEGG:ns NR:ns ## COG: BH1029 COG2766 # Protein_GI_number: 15613592 # Func_class: T Signal transduction mechanisms # Function: Putative Ser protein kinase # Organism: Bacillus halodurans # 1 631 1 631 631 946 75.0 0 MDIFKRITEHRTEKEQLAWSGTLREYLELVRQNPGLAMTAHARVYEMIASHGIQQNDGHA RYNFFDQEIFGLDRAVEKLVEEYFHSAARRLDVRKRILLLMGPVSGGKSTIVTLLKRGLE QFSKTDRGAVYAIKGCPMHEDPFHLIPSELRPEIEAELGIRIEGNLCPSCQLRLKTEYGG NIENVLVERVLISEDDRVGIGTFSPSDPKSQDIADLTGSIDFSTITEYGSESDPRAYRFD GELNKANRGLMEFQEMLKCDEKFLWNLLSLTQEGNFKAGRFALISADELIVAHTNESEYK AFIANKKNEALQSRMIVMPIPYNLKVTDEEKIYTKLIKQSDMSHIHIAPHALRAAAIFSI LTRLKETKKQGMDLVKKMRMYDGEAVEGYKDADLKEMQNEYLEEGMSGIDPRYVINRISS ALIRHDLQCINGLDVLRALKEGLDQHPSITRDERERYLNFISVARKEYDDIAKKEVQKAF VYSFDESAKTLFDNYLDNIEAYSNWGKIKDPLTGEEMDPDERLMRSIEEQIGISENAKKA FREEIQIRISSYSRKGKKFDYSTHERLREAIEKKLFTDLKDIVKITTSTKTPDERQLKKI NEVTRQLIDGHGYCPVCANELLRYVGSLLNR >gi|333603965|gb|AFDH01000116.1| GENE 45 46720 - 47835 957 371 aa, chain + ## HITS:1 COG:CAC3013 KEGG:ns NR:ns ## COG: CAC3013 COG5482 # Protein_GI_number: 15896265 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Clostridium acetobutylicum # 4 238 6 234 242 159 38.0 1e-38 MAIRSETELYGPVKAYWEKLGYDVRGEVRHCDLVAVLEGEPPVVVELKRSLTVPLLIQGL RRQDVTHRVYIAIELPAKGRVPHRMTWADIRKLCGRLGLGLITVQFYKTKKPAVEVVCEP PGFGDAAPARKTSVRKRAAERVLGEFRERSADYNVGGSRGLKLVTAYREKALHCALLLRE QGPLPPRRLRELTGNAKTAALLQRNVYGWFTRVRRGLYGLTRSGEEALDTFAHVAAHFVP READAAPEAGLPESGEHSRPKEAADAADEREAAAGTGPTTRGRLQEPPELNERPGAGVAA TAELLGVPRSADVRDAQDVSKPPDPLGLLSETGQRGAAGQAGKPDLTDMSGLQEVPNRRR KSAKAKKGGST >gi|333603965|gb|AFDH01000116.1| GENE 46 47871 - 49388 785 505 aa, chain - ## HITS:1 COG:no KEGG:Cthe_1452 NR:ns ## KEGG: Cthe_1452 # Name: not_defined # Def: KWG repeat-containing protein # Organism: C.thermocellum # Pathway: not_defined # 10 502 5 549 551 252 32.0 3e-65 MRKLVSFLFVFTLVFSMMAVTNANEASGSGSVPQPEYLPYAEVGVLSEGLAWYMEAGEET DSFGFIDTSGKIVIKARFEAAGIFHDGLAPVRIDGLWGYVDKTGQFAVPPIYTGVGRVFE EGFAQVVKDDKWGYVDKTGKEVIAFDYEDTNPFNNGLAPVKKNEKYGYINKEGKEVVPFR YEAASVFSEGRAMVKIKDKWGVIDQNGIEIEKPKFEEAFPYSRGLAAVKHEGKWGYIDLS GREVIRAHYDEARPFQEGDLAPVQIDGKWGYVNKEDTMIIQPQFIDVYTVFSEGLALVSI ENEDENEMLGYIDQTGKAVVPYSYDLLGSSFSGGLATVADGGQGSFYFMPNPLNVQTQEP QTQSALPSASKVMINGREVSPEAYNIGGNNFFKLRDLAMLLNGSDKGFEVGWDQDAKVIR LITSKAYTEVGGELAATGQHSVKQAAPATAKLLVNSEEARFTAYTLDGNNYFKLRDLAQA LDFNVSWDAASNALTIDTKSGYQPE >gi|333603965|gb|AFDH01000116.1| GENE 47 49550 - 49702 110 50 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIERSNLNLKREKNPWSLTIRLLNILLILVILGIALYLGLWIVTILGINI >gi|333603965|gb|AFDH01000116.1| GENE 48 50385 - 50480 61 31 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLKFSRRLLIILIISLILSMASRISIPHSIA >gi|333603965|gb|AFDH01000116.1| GENE 49 50751 - 50900 118 49 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFGVGTVGTDVGMFGVGTVGTDVGMFGVGTVGTDVGMFGVGIVNDLSEL >gi|333603965|gb|AFDH01000116.1| GENE 50 51169 - 51828 45 219 aa, chain - ## HITS:1 COG:no KEGG:BBR47_17370 NR:ns ## KEGG: BBR47_17370 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 2 219 75 294 294 253 50.0 3e-66 MARAKNLGAMKSSGQYLIFCDAHVFFEDYWLDRLLQPIRDGIADATTPGIADTTTPDLCG YGQTLNKYLGVEWNIDLTELTPIAVIPGGCYAVSRSLFFDIGGFDNGFKVWGYEDVEISM RMWLFGYTCWVQPEVKILHVFRKTTPYQVNLENVYFNILGLAFNHFKEERIEACRMLIQN SSQIELAILRSGFLDQRKAYFSRRKHDDDWYMKKFEIPF >gi|333603965|gb|AFDH01000116.1| GENE 51 52061 - 52888 171 275 aa, chain - ## HITS:1 COG:no KEGG:Deipr_2234 NR:ns ## KEGG: Deipr_2234 # Name: not_defined # Def: hypothetical protein # Organism: D.proteolyticus # Pathway: not_defined # 4 234 98 328 365 144 36.0 5e-33 MPHYDAAAFFIVAHMDDWQLFMNPQATWEMSSDTVKVIFIYTTGNDAGGDENYWRANEEA AVRSIEFSKLHTDYTGGERGTVRINLRNIHRWSGGNTVCYFLRLPDGNVAGEGFISQGYQ SLRKLRSKDISFIKALDQSSFYYGWQDFICTLQQIIDLETKGIKEVRINYPETDPTLNPN DHSDHILTGQAVEALPKYKQYRPFSYIGYDLIHYPADLKNDDLFWKVGQFTVYDQTLYEL SKYSILKRASSTFISFCLRSARFREIYDFKDRNGL >gi|333603965|gb|AFDH01000116.1| GENE 52 53526 - 53684 164 52 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTERSNLKLKKEKNPWSLTIRLLNILLILVIVGIVVFVGLWFVGIYGMNVRG >gi|333603965|gb|AFDH01000116.1| GENE 53 53887 - 54531 614 214 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MAEYAKILRWTKSDAVYGLKTNIQLPSSASVGTTGGFINFYLGVYGSNTNYECGLSTNYT EAQNGKWHWFWNTGAANDGGAFNLAAGSTVPIELSVNSSNKLDFKVNGTVVKTFSGATGS FGSLTSARLVVAACDRSFTTIPNPLPNWNTLHNQVVCSGISFRNSAGAWTVLSSANSTPP SSTTFWPDGYTHTGTPADYTKVVSTGQLIASLKR >gi|333603965|gb|AFDH01000116.1| GENE 54 54838 - 55833 946 331 aa, chain - ## HITS:1 COG:BH1493 KEGG:ns NR:ns ## COG: BH1493 COG0492 # Protein_GI_number: 15614056 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Thioredoxin reductase # Organism: Bacillus halodurans # 3 326 2 293 298 264 44.0 2e-70 MTYDSIIVGGGIAGLQAAIQLGRYGHRVLVIDAGYGRSTLCANYHNVLGYPDGISGEELR RTGRGQAEALGVAFAEGLAVRLAGSLESGFRVGVRKLLPDERGGRHPLAAHDPGGQGLPD ESGAGPDTEYTGAALLLATGVMDRFPELPGLRECLGHTVYVCPDCDGHEVAGRRTLVLGA GNPGAGMALTLRPRTDKLTFVNHERSPVNADLQEKLEHAGIDTVAGPIAAILEDGGKIGG VELAGGETLSAERGFLGFGGNAVHSGLAAQLGVERMENGHLLADPRSKETNIPGVYVAGD IGVHAEQLTVAMGEGAMAAIWMNKAIRKKNN >gi|333603965|gb|AFDH01000116.1| GENE 55 56023 - 56604 448 193 aa, chain - ## HITS:1 COG:PA2931 KEGG:ns NR:ns ## COG: PA2931 COG1309 # Protein_GI_number: 15598127 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Pseudomonas aeruginosa # 3 175 6 178 196 89 35.0 4e-18 MVRQREFDEDAALDAAMRLFWEKGYEAASLTELTARMGIQRPSMYAAFGSKKELFEAALR SYTQAHAARVRAKLQSRTSVKDAFCALFEGIVADEYEGSLNRGCFSINTMVELAPHDEKF EILTREHQLYLSVIFQETIERGIRAGELDAALEARGTAQALLVSLIGLTVMLKSRPDRQF ADNTVKTVLTLLR >gi|333603965|gb|AFDH01000116.1| GENE 56 56870 - 58315 926 481 aa, chain + ## HITS:1 COG:SMa1959 KEGG:ns NR:ns ## COG: SMa1959 COG0477 # Protein_GI_number: 16263526 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Sinorhizobium meliloti # 97 475 84 463 469 296 57.0 5e-80 MVSPCKIGSPAGQTDGASDAKAASDVAVVDASVPTPAAAHHQNQTSASDLKPAPTSLFAS ASSPNSPPKWRSKAQSHSASPSAPASFPVPASAPSSLSASKALLFSAASGLAVANIYYAQ PLLDALASEFGVAPAAVGLVVTVTQICYALGLLLVPLGDLLNRRRLIVVQMLLSAGALLI VGTAPSAPVLLAGLAAVGLLAVVTQVLVAYASTLASSAERGRVVGVVQSGIVIGILLART FAGTLTDLAGWRSVYLTSALLMFATGAALYRILPDVLHKKTELSYPQLLRSVFALFMEER LLRIRAVLAFLIFTAFSTLWTGLVLPLSAPPLSLSHTAVGAFGLAGAAGALAAARAGRLA DRGLGQRTTGLALVLLLASWGFIGFTPHSLAAAVVGVILLDLAVQAVHVTNQSLIFTVRP EARSRLTAGYMIFYSLGSATGAIASTSLYAIGGWNGVCLFGAGVSGLALLFWAVTRGRGS E >gi|333603965|gb|AFDH01000116.1| GENE 57 58505 - 59806 1810 433 aa, chain - ## HITS:1 COG:Cgl2408 KEGG:ns NR:ns ## COG: Cgl2408 COG1653 # Protein_GI_number: 19553658 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Corynebacterium glutamicum # 1 424 1 434 443 107 27.0 4e-23 MKKLSTLALVSVFAMSTVLAGCGSGDSGKTADGGNAAEGGTKTIKIFQFKVEIAEALNKV KAEYEKTHPGVKLDIQTVGGGADYGAALKAKFAGGDTPDIFNNGGFQEMNTWMEHLEDLS DQPWVKDLVPVAKEPMTKDGKIYGQPMGLEGYGFIYNKDLFKKAGITELPKTLTQLDEAS KKLQAAGITPFANGYQEWWVLGNHTLNVAFANQPDSNKFIAGLNAGTEKFKGNPVFEQWT RMVDLTLKYSNKNPLTTDYNTQVTMFANGQAAMMQQGNWTQVQIDGINKDLNIGILPMPI SDDAAQTDKLYVGVPNNWVINKNSKVKAEAKEFLNWLVSSDAGKTFITHDFKFIPAFTNI EAKAEDLGDLAADIMTYSKENKVLGWNSSKYPEGAMQEFGATMQAYVAGKKTKDQMFDDF QKTWDNLKGKTAQ >gi|333603965|gb|AFDH01000116.1| GENE 58 59948 - 60784 1029 278 aa, chain - ## HITS:1 COG:Cgl2406 KEGG:ns NR:ns ## COG: Cgl2406 COG0395 # Protein_GI_number: 19553656 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Corynebacterium glutamicum # 12 278 34 304 304 180 41.0 3e-45 MEAQNRYSGRVFIAEIVTFVIALLFLVPFYFLLVNSVKSFGDLLSNAASWPESFHFENYK RAWSITKFPTVFWNSLIVTVISNIGIALISAMAAYRLVRYKSRLNQVLFGMFVAAMVIPF QSIMIPLVKVLSGVGLMDSLWGLIICYLGFGAPMAIFLFHGFVKSIPLEIEESAVVDGTS PYGVFWRIVLPLLKPMFVTVIILNALWTWNDYLLPSLVLQNQSLRTIPLATFSFFGQYMK QWDLALPALVLGITPIIIFFLAMQRYIIEGITAGSVKG >gi|333603965|gb|AFDH01000116.1| GENE 59 60785 - 61663 994 292 aa, chain - ## HITS:1 COG:Cgl2407 KEGG:ns NR:ns ## COG: Cgl2407 COG1175 # Protein_GI_number: 19553657 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Corynebacterium glutamicum # 14 292 12 281 281 201 42.0 1e-51 MHKRSSQWGQQLFFLGPAVLFFTLIIIIPFLLGMYYSFTNWNGVSGEVSWVGFDNFKRIF TQDQDFWSAFWFTVRFTIVGVVLSNLVGFVLAYLLTRPLKTRNFLRTIFFMPNVIGGLLL GFIWQFIFVKGFSAIGEMTGIGFFNLPWLGDSTTAFWGIVIVFVWQTAGYLMVIYIAAFS NVPKDVIEAAQIDGATQGQVLRSIMIPLIMSAVTVCLFLAISWTFKMFDLNLSLTKGGPF RSTESVAMNIYSEAFQNNRYGLGTAKALVFFIVVAVITWLQVRFTKSKEVEA >gi|333603965|gb|AFDH01000116.1| GENE 60 61783 - 63753 2036 656 aa, chain + ## HITS:1 COG:BH3447 KEGG:ns NR:ns ## COG: BH3447 COG2972 # Protein_GI_number: 15616009 # Func_class: T Signal transduction mechanisms # Function: Predicted signal transduction protein with a C-terminal ATPase domain # Organism: Bacillus halodurans # 167 508 172 509 602 148 28.0 4e-35 MNKSSIRTRLILLMLAATVIPIVISMIVTYFYTTRSVGTKLIQENANLIYQGKTNVQAYM DTLNRNSLSLYNDPGILLMLRRNVHDYTNEAQTYTLLQNMTHSVDGIYQIYFYMAKARRS TLLIGDIPKRGYDTDNFSEPYTTGNPSSVVEPTHMSSIYGLGQSPPYYDPRPVITLHRAI YNVPTTEWLGTLSIDIKLEAIQDIADQLFNKQHERLYLLDQSGMVVYSGDSALIGKPLSD AWTGPILESKEPRGRLELNKSVYLYEKMDTPYMKWTLVKEIPHSYLYEGARSLTQINIII AAVSLLLVIAATLFVTIRITAPIKKLIGTINQIQAGNLTARVDGEGQDEIGILVRRFRTM METINNLILREYRLNIANKTNQLKALQAQINPHFMNNALQSIGTLALQHNVPRIYSLINS LAKMMRYSMNTNQEAVPLSMEIGHVKAYLELQKERFEGKFRTDFELDEAALGIEVPKMII QPLVENYFKHGFDPKLGPGHLTVRVRLEPGGETGSDEIPLEPGGEAGPDGIGAESGPAAG GDAAPRIAPESRTDEDSAAADASPASGGPRARPVLFVEVEDNGRGIPEDELTELQAGLAV MREETGMDEEGGIGIGNVRTRLRLYFDPQASLTLENTDPHGVRITMRIPLGEDTTT >gi|333603965|gb|AFDH01000116.1| GENE 61 63750 - 65381 1722 543 aa, chain + ## HITS:1 COG:BH2109 KEGG:ns NR:ns ## COG: BH2109 COG4753 # Protein_GI_number: 15614672 # Func_class: T Signal transduction mechanisms # Function: Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain # Organism: Bacillus halodurans # 4 130 5 132 525 104 39.0 4e-22 MIALLVDDEKHVRNALRMLIKWEEHGISQIFEAENGEEAIEVIGREKPQIIITDMMMPVR GGVELLQWLQANDPSAKSIVISGHDDFALVRHTIQYGGTDYILKPIDPDQVNEALAKAVA SWNKEESERSRSLERNIEMNRIKPVYWDRQLSGLLDEPAQNPGAVRDLQADWGLPAGTGS CRIAILSMVTMETKLKNKFGRNTDLLFFSLINICNEFLHRRSRGAAFRYWSSNEIVLLVW GEPDKVPALLGDINEGILTALHSRLDFGLSVAHAFPDGLPAAYREARDALRQRNLLSRGG WIHEAVRPEGLQPRRLRFSDFEEVIRTAIRSGSAEEISSAVQAWFDGVRSLSAITLEQIE QWRHEADTMRGRWIEDFFPDGPEELLAELRSETGNGQTIVPLNEQGTLSLADWQQELTHS FVQLSKQLLKRQHREKNVIYDIAKYLQTHYHEEISLQDIAGRFFLSREYISRKFKQEFGT NLSDYLGSIRIDKAKLLMMNPNLRISQVSEMVGYGDEKYFSKVFKKVTGCSPNEYRKANQ PMM >gi|333603965|gb|AFDH01000116.1| GENE 62 65469 - 65567 161 32 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSHAFWIIIAVLTMFIVAIFTSSYNEDKTKGL >gi|333603965|gb|AFDH01000116.1| GENE 63 65738 - 66769 508 343 aa, chain + ## HITS:1 COG:BH2267 KEGG:ns NR:ns ## COG: BH2267 COG1680 # Protein_GI_number: 15614830 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Bacillus halodurans # 9 334 5 326 332 387 56.0 1e-107 MKEIITESMKSLKEAIGFSGTALARNKDEILVNFSSGYANRSEGIRNRADTRFGIASGCK LFTAVAICQLVEKGQLSYDSRLQDCLPLEFKHFDPEITIHHLLTHTSGIPDYFDEETMDN FEDLWTHYPMYRVRRPQDFLPLFADKKMKHEVGRVFHYNNGGYIVLGLVVEHLSGLAFSD YVEKFIFAKAGMMDSGYFEADCLPERTAVGYIDQEDGSWKTNVFSLPAKGGPDGGAYVTA PDMTRFWESLMTFELLSEETTAALLQPHVHITNDIYYGYGLRMKLRQQDVEKYILMGYDP GVNFRSVYYPEEARSIVVCSNKSGGAFEIISGIEQECTGQKRG >gi|333603965|gb|AFDH01000116.1| GENE 64 66823 - 67239 359 138 aa, chain - ## HITS:1 COG:no KEGG:Clos_1149 NR:ns ## KEGG: Clos_1149 # Name: not_defined # Def: hypothetical protein # Organism: A.oremlandii # Pathway: not_defined # 14 131 4 120 122 125 50.0 5e-28 MINIDGIGFGDGPGMFGLISALFPIFFIAILAFIGFTIVRSILQWNHNNKQPILTVEARV ATKRTQVSHHHSASNESMHSHSTDTAYFVTFEVESGDRIEFRISGSEYGQLVEGDMGKLN FQGTRYLGFARHRVVSYP >gi|333603965|gb|AFDH01000116.1| GENE 65 67419 - 67679 181 86 aa, chain - ## HITS:1 COG:CAC1941 KEGG:ns NR:ns ## COG: CAC1941 COG2002 # Protein_GI_number: 15895214 # Func_class: K Transcription # Function: Regulators of stationary/sporulation gene expression # Organism: Clostridium acetobutylicum # 2 78 1 77 79 84 49.0 3e-17 MMKPAGVVRKVDQLGRIVLPKSLRKRYQMNEGDPVEILVQGDHIILERYRPKCVFCGEMD HVNEFKERHICSNCLGEMNAMKQPRV >gi|333603965|gb|AFDH01000116.1| GENE 66 68863 - 69021 59 52 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MIIVELHKIMIEFFFGVNNCIYQACSFIEIKKLNTSIFISFIPYNHFFSFKI >gi|333603965|gb|AFDH01000116.1| GENE 67 69031 - 69093 60 20 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKVFISFKKNPHVHFLIFFI >gi|333603965|gb|AFDH01000116.1| GENE 68 70196 - 70660 375 154 aa, chain - ## HITS:1 COG:BH1023 KEGG:ns NR:ns ## COG: BH1023 COG0219 # Protein_GI_number: 15613586 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted rRNA methylase (SpoU class) # Organism: Bacillus halodurans # 1 153 1 156 157 190 57.0 8e-49 MAFHIVLVEPEIPANTGNISRTCAATGTYLHLVRPLGFSTDDKTLKRAGLDYWHSVKLEY HDSFDEVKEKYARNRFFFATTKTDKRYTDFEFRDGDFFVFGRETKGLPPEILEAHPGQTM RMPMSDAVRSLNLSNSAAIVLFEALRQNDFPGLR >gi|333603965|gb|AFDH01000116.1| GENE 69 70802 - 71515 640 237 aa, chain + ## HITS:1 COG:BH3157 KEGG:ns NR:ns ## COG: BH3157 COG0745 # Protein_GI_number: 15615719 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Bacillus halodurans # 1 234 1 239 239 253 51.0 2e-67 MKKKVLVVDDEPSISMLIEFNLKLVGFEVQCVYDGEAVFDVIGQFRPDIIVLDLMLPKMD GLQVCRKLRSQNNLVPIIMLTAMQDLSDKIAGLDNGADDYMTKPFSPQELISRIQAIIRR IQTLPASGEEAPITIGQLSIRPDQREVTCAGKPVDLTPKEFELLVFLCKHRGKVLSRQQL LHGVWDYHFLGDTRIVDVHISHLRDKIEANARTPEYIMTIRNVGYKLTEPAIKESFA >gi|333603965|gb|AFDH01000116.1| GENE 70 71759 - 72847 1236 362 aa, chain - ## HITS:1 COG:BS_serC KEGG:ns NR:ns ## COG: BS_serC COG1932 # Protein_GI_number: 16078066 # Func_class: H Coenzyme transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoserine aminotransferase # Organism: Bacillus subtilis # 4 361 3 358 359 426 56.0 1e-119 MGNRAYNFNAGPAALPLEVLEQAQKEFVDFRGIGMSIMEISHRSAEYEAVNNETQSLLKE LFSIPDGYKVLFLQGGASTQFTMIPMNFLQAGQTAAYVQSGAWADKAIKEAKLFGETVVV ASSKDQKFMRMPDLGALNLSDQTAYLHVTSNETIEGSQVQSYPDTGSIPLIADMSSDILS RPVDVSKFGLIYAGAQKNLGPSGVTVVILREDMLERANANLPTMFRYDTHVKNDSLYNTP PSYSVYMINLVLHWIKRQGGLAALEKINRDKTDLIYNTIDASGGFYQGCVDADSRSRMNI TFRLQSEELEKLFVKESQANGFVGLKGHRSVGGLRASTYNAVPYESCQALAQFMNDFSKR NG >gi|333603965|gb|AFDH01000116.1| GENE 71 72987 - 73559 464 190 aa, chain + ## HITS:1 COG:BH3270 KEGG:ns NR:ns ## COG: BH3270 COG1514 # Protein_GI_number: 15615832 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 2'-5' RNA ligase # Organism: Bacillus halodurans # 9 190 7 185 186 117 34.0 1e-26 MTDPLERLFVAVPLSGPVRENLSGWTERLRDSGTPFHKWVHPEDFHITLKFIGDTPRSTL PALSPLLEQAAEAHSPLELTAAGAGTFGPKDAPRILWAGLQGDLDALQTLQRDVEAACSS LGFEPEDRPYRPHITLARRYTGGRKWARELLDAPGEPPSASWTAEEIVVYRTHMGRSPMY ERAGAFALRG >gi|333603965|gb|AFDH01000116.1| GENE 72 73950 - 75047 1124 365 aa, chain + ## HITS:1 COG:BS_yflM KEGG:ns NR:ns ## COG: BS_yflM COG4362 # Protein_GI_number: 16077830 # Func_class: P Inorganic ion transport and metabolism; E Amino acid transport and metabolism # Function: Nitric oxide synthase, oxygenase domain # Organism: Bacillus subtilis # 30 364 2 336 336 453 63.0 1e-127 MNSTNDIADKARAFLYTCYSEWGRSEQEAEERWLDVCAQIEETGTYVHRPEELEYGAKLA WRNSNRCIGRLFWNTLSVFDGRHTGTFEEVRDALLTHIRFATNDGKIRPAITVLPPAGKD GNGPVRIWNHQLIRYAGYETKNGPVGDPNSIPFTRICRELGWEGEGTHFDLLPLVIQIGD DAPRWFELPRDLVLEVPLRHPELPGFEDLQLKWYAVPIIADMRLEIGGISYPAAPFNGWY METEIGARNLADEQRYNLLPRTASLMGLDTGSNATFWKDRALIELNAAVYHSYRNAGVSI VDHHTAAQQFQLFEQQEAQAGREVTGDWTWLIPPVSPATTPIFHSKYENTWKTPNFYYQN KPYEK >gi|333603965|gb|AFDH01000116.1| GENE 73 75494 - 76645 470 383 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MRRRMINTASLLLLMCTILLVPSNAFAAYTIGTETPFPTPSVKESYTSGDVTFSKTGHPV FVSNAPESIYDHQVNKTLYRDTLNGTFRFWSSHRNMTTENVKFFLYVKNPSATNSVKLYL IKDGYGDSNAGGDVTKAASTATSGFMSSKNAGGTYLATIAPGQGYAYEYSAAGGIASQKA IVHIADFRAVDVTTGSDANVKISDISTNTGTTNLAAYANTATIASTNYNAKTKDDYRGLL QYSGRTADIHLTLTSAAPARFITQSDDGGYINEQDILLSRWNIDGNPQDQTPASFNGKIR GAYWCTDYTYHINITNSSGLPNVYTLYGSRTSGAFINYKISTVTNRHVDKGNGIVINDTP TYTLHTIVQPSNNLPLSLDFVAQ >gi|333603965|gb|AFDH01000116.1| GENE 74 76619 - 76807 101 62 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MDRTFVPQLGKITWIWGLILIIPAAFIHSEADKKFNRNKKKAETSRFFFAYLYDLLGNKV QG >gi|333603965|gb|AFDH01000116.1| GENE 75 76843 - 78504 1637 553 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_2817 NR:ns ## KEGG: GYMC10_2817 # Name: not_defined # Def: GerA spore germination protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 37 523 27 514 542 591 61.0 1e-167 MWNWMKNRKTGSPLSGIPMPEPRIAVPSLYIEEILSGKQLSAGIEENLKLFQDVLQYNDD LTVRRFQLFEGTSAALVFFSSFADQEMIRSYLIKPLMTHTEQEDLIVDSESLASYLTEKV IQVSRITEEKAPDRIIDELTMGETVLLVDGIATAFLADTRKIEKRSIEQPQTEQVIRGPR EGFIEHLQTNLALIRYRLQTADFRVHTMHIGRVTKSKVALCYIQGITHPALVHEAKKRLS SIDTDSILDAGYIEQFIEDHPLSPFPQIQNTERPDKTVAALVEGKFVIMVDGSPFALIAP TVFSQFYQTVDDYTERFLIGSMTRFIRLIALLFSLVFPSLYVAVISFNPEVIPTDFAVAV AGSRAGVPYPAMVEVLLMEISMEVLREATIRLPQLIGGALSIVGVLVIGQAAVSAGFSSP ITVVIIAMTTVGSFATPAYNAAIALRMLRFPLIVLAGCFGLYGIMFGMILITNHLLSIRS FGVPYMTPVTPFNAQEWKDTLLRGPIWWMSDRPGHLKSLQTKRRKHIDRYYRSPSSSWDK ISEAPDQGGVPDE >gi|333603965|gb|AFDH01000116.1| GENE 76 78497 - 79603 1205 368 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_3142 NR:ns ## KEGG: Pjdr2_3142 # Name: not_defined # Def: spore germination protein # Organism: Paenibacillus # Pathway: not_defined # 1 367 1 367 373 269 43.0 1e-70 MNDQRLTNWQAMCILISTIAGVGVLPLPRLAVTAGETAAPLVTAGGILLGALLIMLWSLL GMRFPDLSPVAYSKLILGKWASGALLVVIALFYLVATAFSFREFSEVTGTFVLRRTPLEV ILFMMLLLVVLSARKDIYSFTLIHAFYTPFVVGPVVVIMMLSFKEVELLNLQPFTTNPDF TFWIGSLGITTLFRNVVIYTFIVPRMRNPQKALKVGLTGTAISGGLYLVIVITTVGVFGA EEIKRLVWPTLELGRATIVPGEFLERMDAIFLVTWIISVFNSLLSGYYLILLIIKEELGL KDHRMLATFLMPFMFLAAMMPQNVIQLYRLSTHILPWGLIAMIVIPSALLLIAGIRGKGG VAHAPDKD >gi|333603965|gb|AFDH01000116.1| GENE 77 79584 - 80816 1153 410 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_3143 NR:ns ## KEGG: Pjdr2_3143 # Name: not_defined # Def: germination protein, Ger(X)C family # Organism: Paenibacillus # Pathway: not_defined # 1 408 1 412 414 345 44.0 2e-93 MRPTRTRLPFLLLTVPLLSLLLAGCWDQQEVEDRALILGMAIDRAENPPNIQSKDRVNHL EPNPIPADKMIRVTASIAVPGRIPLGPGEGGGGSGGQDTTKPVWIVSVFGHTVNDALNNL QQQIADPKFLIHLRVVVVSEEVAYDTLEHINDYFRRDSEVRRRTWLLISKGEAARFLNVA PPLERVPTLYVLAMLDKSVKLGKFPRDYIGTFWSTQSKQGQEGYLPYVDIRRNENILIGG MALFRNNKMVGTSEPLEIGAFMSVKEMNPGGYSPLVDVPGIGPVMATTTLRKSRIHLEMK NGSPRFKVMIYLEQDLEEKYLEDTVIDEKAISKIEEAISKEVNKIILNFIRKTQRMKSDI FGFGEYIRAKEHAYWSARIGSKEKWETRYADLPVEVQTTVRINRTGMQFR >gi|333603965|gb|AFDH01000116.1| GENE 78 80847 - 81032 160 61 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MHYLGGYFAVSGLMLLWIDKRIYAISGWRKEKTFTLWLGIVQLALGLLALAAHYFLRYSV W >gi|333603965|gb|AFDH01000116.1| GENE 79 81257 - 82462 1063 401 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_4491 NR:ns ## KEGG: Pjdr2_4491 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 39 399 94 456 458 397 54.0 1e-109 MDTAESQQHRSAETGCLNGLTEDELLEAQITAKTGPSNPLIGVLVKTLQPSSPNLFGGIT AFCKELDEASKEQGARVFFFSVDGIKPGSPRINGWHYASGSWKKETFPMPSVIYNRLTSR ILENRPKVQQFFRDAKANYGAKVFNEKYLNKTEVFQALKDEAACKSFLPESYLFKNYVML QSMCKKHATVFLKPVLGSLGKGILRISALGGGSYSCDIPTLNGTSRKVYPSLLKLFNAQA GKLKTSRYQIQQGLQLVQVGGRPVDFRALVQKDQQGEWAITSIVARIAGANHFVSNLARG GSLSTVKEALAQTSLPAADHKKISAQIRKAALAVAEGIQTHIPALFGELGVDLAVDTGGR VWLLEINSKPSKNDNTALDGGSKIRPSVRRVIHYSKYLANH >gi|333603965|gb|AFDH01000116.1| GENE 80 82683 - 83207 175 174 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167856514|ref|ZP_02479226.1| 50S ribosomal protein L1 [Haemophilus parasuis 29755] # 9 172 20 174 175 72 29 2e-11 MKKQLGKKLIIASLSAAIALSGGLTALPQQSHAAVSSSAFKAKADKIITLGNKYLGRPYK FGAKTGNTSSFDCSSFVQYVYQQNGIKLARGARDQSKNGVKIKRSELKPGDLVFFSTTKT MKYSASSVNRIGHVGIYAGNNKVLHTFGKGGVTYSNMGSGWWDNHYVTAVRVIK >gi|333603965|gb|AFDH01000116.1| GENE 81 83244 - 84011 606 255 aa, chain + ## HITS:1 COG:NMA0440 KEGG:ns NR:ns ## COG: NMA0440 COG0791 # Protein_GI_number: 15793445 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell wall-associated hydrolases (invasion-associated proteins) # Organism: Neisseria meningitidis Z2491 # 124 255 149 272 280 85 36.0 1e-16 MKKIAKLVLGLSLLAGSSLSAGAAFAATAPAITTSSTIITTGNPYLKQLPYSSQGKIYGT VPKGTKLTVLENTNQYYVKVNYNGQTGYISTLYLKAVGGGTFTAPAPSKPGTSGSSSATW SKQADSILSFAKSLQGKVQYAYAKNDTNKLIFDCSSFTKYVFNKEGIHLPWGARAQYKLG TPVSKSELRKGDLVFFSTTATAKNKDTVNKIGHVGIYIGNNKFIHNVNPKDDVVIGDLNN TWQKNHYVASARILK >gi|333603965|gb|AFDH01000116.1| GENE 82 84227 - 85363 1008 378 aa, chain + ## HITS:1 COG:no KEGG:BBR47_41740 NR:ns ## KEGG: BBR47_41740 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 1 353 2 354 364 343 46.0 8e-93 MAKPVIGILTWREGHSFKEPGYFRSLVREGQKLDATVFIFSHKDAFPDKKQVRGYVPVGN GSWSSRIFPWPDVVIDRCRTAQEGYSEFRKQKHFVYANHTFTNKMSATRLFSNEEALKKW IPATVDYNAENLVRMFKNHQIVYIKPGNGTGGKSIVKISRVKGGYKLLGRTKGYAKRNVL FRNITSLTNWLNQWVRQERIRKGSFMIQQGLDLDLLPGHVSDMRLLIQKNDKGKWEVTGE GMRIGAINNPTSNLHGGGRASSTEAVLHKRFTPEKTREIIAECHDLAHGVVTVIEKHFGR MLEYGLDIGIDKQGSVWLIEVNPKPGRELFKKMGRKDLYQQSIRRPLQYAIHLYEQAQKH EQKQEQKQEQKQEQEQEK >gi|333603965|gb|AFDH01000116.1| GENE 83 85508 - 86314 818 268 aa, chain - ## HITS:1 COG:no KEGG:PPE_02201 NR:ns ## KEGG: PPE_02201 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 3 243 4 244 287 227 48.0 4e-58 MDSQNVLPNTKLGKTQFLNRHSELKKFQPDTAQATKDHLYDFLKRYRMVYVKPNNGTGGR GIFKVEYSSKGRYRYQINETKKKFETYDELYRTMSKHFGDTKHLVQRGIHLLTSKGRPFD IRIMVQKNLRGDWENTGIIGRVAHPDKIVTNYHRGGTPTEISKLLKEYLKKEQVPDYVAK LNRLGHEIAEYMETGYPKVTAIGVDIALDSELKPWILEVNTKPDASIFKKLDDKSIYRKI WKYKKANRITLRRRSVDNSLKSQPLTRV >gi|333603965|gb|AFDH01000116.1| GENE 84 86539 - 86640 134 33 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSGVGGYGGGFTSTGAILVLFILLVIISRSFLY >gi|333603965|gb|AFDH01000116.1| GENE 85 86749 - 87978 1021 409 aa, chain - ## HITS:1 COG:RSc1651 KEGG:ns NR:ns ## COG: RSc1651 COG4102 # Protein_GI_number: 17546370 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Ralstonia solanacearum # 3 409 1 392 394 193 34.0 6e-49 MNLTRRDFLIKGTALIAAIGFGGPLLYADSKNMLKPGPPAGAKDRVLVVVQLSGGNDGLN TLIPYGIGAYHDARPRLRLQQHEVLDINGQLGLHPSLTQLHGLYQRGKVAIVQGVGYPKP DHSHFRSMEIWHTGEPEKRISDGWLGRYAFSSLDTANPLRAVQLGKTETRALRHDSISLP VVSALDSYKIFTSKPPDPDRGRLNKAFLDMYNLNKQAAPLRVACSSGIEAYRSVEAIGSL RPGYAAGAPYPDTSFAKDLQLAAQLMASGSGTRVFYTQLGPFDDHANEKAHHAAMLSTLD GGLGAFYRDLEAHGLQDQVMVMAFSEFGRRMKENGSGGTDHGTAGPVFLLGGGVSGGLYG AYPSLTKLDKGDLKAELDFRSVYYTVVENWLNGDARSAVGRLYEKLSFV >gi|333603965|gb|AFDH01000116.1| GENE 86 87995 - 89305 1302 436 aa, chain - ## HITS:1 COG:RSc1650 KEGG:ns NR:ns ## COG: RSc1650 COG5267 # Protein_GI_number: 17546369 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Ralstonia solanacearum # 12 357 57 418 538 235 37.0 1e-61 MKPWTEKEVLHLLGRASFSATPGEVDRCLKLGREETVRRLTSGQPLADGAASALAFSEVK ADDKPLIVTGVGDQQTYWLYRMVASPTPLVEKMTLFWHGHFASSQYKVSDIKLMVRQNDL FRQHALGSFRKLTEEIGQDPAMMLYLDSYTNQKGSPNENYAREMMELFTLGIGNYTEQDV KEAARSLTGWSYNRKTDIVQYQEARHDAGHKVFLGEAGYFDSADVVRVVFKQAALPKFLA TKLLQYFAAENPPDAWIDRVARNIAKMPTIGDVLYDLFASDEFYEEAYRLSLVKNPAEYV AGTMRTLGLPLTAVFRASMGLMGMELYAPPDVSGWKGGASWLATSRLIARYQFAEKVAKR VTEDQLQSLAPQGVQAGPEAYVEGCRRGVGLAPLGKNTMNVLTQYAAETIVSSKKPAVGK RSLLQLLLISPEAQMK >gi|333603965|gb|AFDH01000116.1| GENE 87 89471 - 90895 1468 474 aa, chain - ## HITS:1 COG:slr1756 KEGG:ns NR:ns ## COG: slr1756 COG0174 # Protein_GI_number: 16329647 # Func_class: E Amino acid transport and metabolism # Function: Glutamine synthetase # Organism: Synechocystis # 4 474 6 473 473 540 54.0 1e-153 MSVQDVLNIIKEKNIEWIDFRFVDLLGKAHHISLPACEVEEETFENGVAFDGSSIHGFRG IEESDMVMMPDTESVYVDPFTAHPTLIVMCNIHTPDGERYERDPRSIAQKAEEFLQTAGV GTTANFAPESEFFIFDDVRYESGMNTSYYTVDSEEGAWNTGRKEEGGNLGFKIGVKGGYV PVQPVDTQQDIRSEMCRLLQEAGLRIERHHHEVATAGQAEINFRFDTLTKTADNLMKYKY IVHNTARQYGKVATFMPKPLFGDNGSGMHVHQSIFDGDTPLFYDKNGYASLSEMALHYIG GILYHAPALIALTNPSTNSFKRLVPGYEAPVNLVFSKGNRSAAVRIPVAAVTPKGCRIEF RTPDSTANPYLAFAAMLMAGLDGIKKKIDPRALGYGPLDKNIYELSDEDKSEIRSVPGTL DEALDALQADHDFLLEGDVFTQDFINNYVDIKRGEAKDVAIRIHPHEYSLYFGC >gi|333603965|gb|AFDH01000116.1| GENE 88 91129 - 92172 1118 347 aa, chain - ## HITS:1 COG:TM0343 KEGG:ns NR:ns ## COG: TM0343 COG2876 # Protein_GI_number: 15643111 # Func_class: E Amino acid transport and metabolism # Function: 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase # Organism: Thermotoga maritima # 1 339 1 338 338 340 49.0 3e-93 MIVILSNKVEEARIQEIVHIIEKHEVKAHVSHGEDRTVIGIIGQADPVLAEQLRQLKGVE QVVKISKSYKLASRDFHPADTVIRIKDVEIGGDQLVVMGGPCAVETPEQIDEIARLVKAA GGQVLRGGAFKPRTGPYSFQGVGVEGLVMMAEAGRKHGLLTITEVMTPEYVDVCAEYADI LQVGTRNMQNFDLLRKLGSIQTPVLLKRGFSSTYDEFLNAAEYILAGGNPNVMLCERGIR TFETYTRNTLDLSAIPVLQSLSHLPVISDPSHGTGRRELVEPMTKASVAAGANGLIIEMH TDPDNSMTGDGVQSLFPDQFAKLLQDLEKLAPLCGKRFDTAKTPVLV >gi|333603965|gb|AFDH01000116.1| GENE 89 92370 - 92924 543 184 aa, chain - ## HITS:1 COG:no KEGG:BBR47_40750 NR:ns ## KEGG: BBR47_40750 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 16 170 11 165 169 94 39.0 2e-18 MQYSEGALRKKKFDLKQTGRWFKYKYLLLLRAKGGPSMVATGFSIGLAVEMFTLPTVGLA FFLIFPLVWLLRGNFAGALIGFVFGKIIYVPMAILFNKPVGSLVVPPGFKEYLIHHVPAF LANVLKGSLELIVGGMIVGGVLGLIMYFPIMLLLRLHASRRKDRRRLRKEHQHAMASGLP GDAD >gi|333603965|gb|AFDH01000116.1| GENE 90 92957 - 93910 430 317 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227371337|ref|ZP_03854821.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; SSU ribosomal protein S1P [Veillonella parvula DSM 2008] # 1 287 1 276 632 170 35 5e-41 MKVVKISPRGYCYGVVDAMALAMQTAKNLDLPRPIYILGMIVHNSHVTRFFEDEGVITLD GPNRLEILEQVTGGTVIFTAHGVSPEVRRKAREKGLTVVDATCPDVTKTHDLIREKTAEG YEIIYIGKKGHPEPEGAVGIAPEHVHLIETLADAEELHIASAKILITNQTTMSQWDIKHI MKKLLESFPTAEIHNEICLATQVRQEAVAEQAKETDLVIVVGDPKSNNSNRLAQVSEEIS GVKAYRVSDVSEIDKSWLMGVRTVGVTSGASTPTPITKEAIAYLEQFDPADPATWGVTRT VNMKKLIPMAKTKAAAE >gi|333603965|gb|AFDH01000116.1| GENE 91 93956 - 95476 1685 506 aa, chain - ## HITS:1 COG:CAC2760 KEGG:ns NR:ns ## COG: CAC2760 COG0642 # Protein_GI_number: 15896016 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Clostridium acetobutylicum # 163 498 157 479 482 161 30.0 2e-39 MSIRLRLTLWYSGILSVTLLLFGFGLYLFLSFYIYNDLEKQLGRTWTETYERIKPLAAPS IRGRVPIKLELDNVDMFSENTLLQLASLNDKEGPVIHDRSSVLKNLELTLPITNNAAQKL RGKDSLVVERLNLKVMDKSYPIILVSRGFDITDPVTGNKLTRGVLQVGATINYYENFFNL LQYTLAILAMLTVLIAGTLGWFLARKALRPIEQVIVATQQIEKGTDLDKRILYDGPEDEI GRLTVTINGMLGRLQLVYSELEEAYRAQRRFVSDASHELRTPLTTIRGNVELLEKMWSRT LTSGQAGGQDKEQMEMSIEAMQDIAGEAHRMSRLVNDMLSLARADAGFEMQRQPLELRPL VEEVARRAQFLPRQVQWEVGDLDPLTDVVVVGNKDYVQQLLFIFIENAFKYTEQGSVRLD ALRSGDQIGLRIADTGIGMDKEEVPHIFDRFYRADVSRGRTAGTGLGLSIAKWIIDEHKG SIEVKTREGEGSTFIIWLPVVFLPVS >gi|333603965|gb|AFDH01000116.1| GENE 92 95477 - 96166 901 229 aa, chain - ## HITS:1 COG:ML0174 KEGG:ns NR:ns ## COG: ML0174 COG0745 # Protein_GI_number: 15826987 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Mycobacterium leprae # 5 226 3 224 228 223 51.0 3e-58 MRETILVIDDDEKITSMLRRSLAFEGYTIVTANNGNDGLKKMLEQEPHLVILDVMMPVVD GWEVCRRIRESGSGVPILMLTAKDEVTDRVKGLDLGADDYLIKPFALEELLARVRVLLRR RNERAEQPTNRLHYDNVTLDMDTREVFRESQLIELTTKEFDLLHLFMQNPKRVLSRDIIM EKIWGYDYSGESNVLEVYIALLRQKTEEYGHKRIIQTVRGAGYVLRGEN >gi|333603965|gb|AFDH01000116.1| GENE 93 96366 - 97976 1807 536 aa, chain - ## HITS:1 COG:TM0571 KEGG:ns NR:ns ## COG: TM0571 COG0265 # Protein_GI_number: 15643337 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain # Organism: Thermotoga maritima # 189 528 29 353 459 226 41.0 7e-59 MDDYKKEFGPDRSNDSDLNRDRDRERELERREASYESGYDSGREEAAAQEKPSYYYSYGP HKTGMTEETHHTESDTTAYSNREGSAPVEVTPPKPVRSFSFSRDGASKPGGGWNGSGPAK KRSSLRSGFAAFLAGAVVVSTLMFAADKTNLFTGKQPMTLPGAQPNSSQTVAAGSASKVS LDSARPDNIAQIFAQASPATVKIESYVKTKSSSQKNQMNDPFYRFFFGDQGDSGKQDSGS GKSDGALQLAGSGTGFIFEKSGYILTNEHVIDGADEIRVTVQGYDKPFVAKLLGNSYDLD LAAMKIEGDKDFPILPIGKADSLNVGDWVVAIGNPYGFDHTVTVGVLSAKERPITIQDEQ GTRNYKHLLQTDASINPGNSGGPLLNMNGEVIGINTAVSSQAQGIGFAISESTFSTVLDN LKNNVTIPKEKAPYIGVSLQNVDKEWVSELKLPNAEGAIVAEVTRKSPAFQAGMRPYDVI VDVNDQKVTNSQDVTTKIQALKVGDKAKIGVMRDGKRVEINVTVGDKNAADTTEKK >gi|333603965|gb|AFDH01000116.1| GENE 94 98206 - 98619 576 137 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_4784 NR:ns ## KEGG: Pjdr2_4784 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 1 133 1 133 137 150 52.0 2e-35 MKALNSSLQETVEAFDNVRDYLHTFEFTLGGNWEYDHGSFDRYLDEAHKVWLRIPFEVTE GTLDGDTDETDAMVKIGAPYVLKHVYNEGNDPEAHMMTVSALVNQFQTPLDPDAEIETEW IGKAEKLLRDVERKWLH >gi|333603965|gb|AFDH01000116.1| GENE 95 98972 - 99634 677 220 aa, chain - ## HITS:1 COG:BS_yvqC KEGG:ns NR:ns ## COG: BS_yvqC COG2197 # Protein_GI_number: 16080361 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Bacillus subtilis # 5 212 2 206 211 172 47.0 4e-43 MKEQIKVMVVDDHDMVRVGLRTYIMLDEELSVVEEASNGEEALRKLEALDAERIPDVILM DLTMPVMNGIEATREITQRFPSIKIIMLTSFLEEDKVVQAVEAGAISYVLKTISSEQLAH AVKGAAAGMPVLNPEVSLALTRGLRQRSAQTEDEGLTAREREVLSLISDGKSNKEIAEAL HISIKTMKTHVSNLLMKCELDDRTQLAIYAHRKGWAGTGA >gi|333603965|gb|AFDH01000116.1| GENE 96 99631 - 100668 1071 345 aa, chain - ## HITS:1 COG:BS_yvqE KEGG:ns NR:ns ## COG: BS_yvqE COG4585 # Protein_GI_number: 16080362 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Bacillus subtilis # 50 342 61 351 360 175 34.0 1e-43 MVKLWSMKWQLMLYFLASSLLTLGILGFSQLYMPWETAGGGWKFGLAVFAVLLGQAVGFV ASRSFQRKVDVLHIAMLQLAKGNLKDRIQIDPIDSFHPVYKSFNEMAGALEERTRLLQEM GEERSVMERGSVETAVVEERRRLARDLHDTVSQELFAIHMSASSLPKVIGHNPDVASQLM EQLIQMSHHAQKQMRGLISQLRPIELDGSTLEQALEKWFPEYCRAHELQGRLDVETEQPI SEAIEHQLFLIIQEGMANVVKHASATEIELQLHDSGRQYVLQLADNGKGFERSAISSASH GLSTMRERAQKLGGDAEVLSGSGSGTTVRVRIPKFVKEPKGEASL >gi|333603965|gb|AFDH01000116.1| GENE 97 100681 - 101706 849 341 aa, chain - ## HITS:1 COG:BS_yvqF KEGG:ns NR:ns ## COG: BS_yvqF COG4758 # Protein_GI_number: 16080363 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Bacillus subtilis # 217 338 120 239 241 97 38.0 3e-20 MNGSIWGRLAGGFILIALGLLFFLKQLGFITLSIGELISTFWPLFLIYAGLMSVLFNRRR QDGAWGLILVLIGGIFQLRNLGWAPYSLGEMFQFLIPVVLIIFGIKMIFGRKSSHRHDSE YGGSPEGHRHGDGHGHWGSEWERKLEDKWEEKARKWQEKISRREARRARRSDWKNDGVYP EAGEGSGESGYAPPPPPGGGSYRPGPDYHYVNSYAPPQNKSGFIGDVYLGQDYWELTPLN ISHFIGDTSLDLTKASIPMGETRINISAFIGDVKVFIPNDLDVEISVTTSSFIGDMNVLE RREDGIMRSMNYRTPYYQEGAKKINLHVSMFIGDIVVKKMG >gi|333603965|gb|AFDH01000116.1| GENE 98 101883 - 102584 744 233 aa, chain - ## HITS:1 COG:BS_yuiC KEGG:ns NR:ns ## COG: BS_yuiC COG3584 # Protein_GI_number: 16080260 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 65 212 55 194 218 156 53.0 3e-38 MLPDSSNPTKWFSMVMMLNIALVLCGQDQTSLTGLTDTAALEKKIAPAISGLTSRQTSEA PEKPAQSQNGTADAQAASGQSRKVSYKLMPDSSQDLSRYKAVEVVATGYYSGIESTGKNP GHPDYGITKSGIKVKRDEHSLSTIAADPRVFPIGTVLYIPGYGYGIVADTGGAIKGKKID LYYETKDQIYKEWGKKTVNVFVVKEGTGKVTQMIWNQLVQEIFKNNPVDTPEA >gi|333603965|gb|AFDH01000116.1| GENE 99 102799 - 104295 1784 498 aa, chain + ## HITS:1 COG:no KEGG:BSU09390 NR:ns ## KEGG: BSU09390 # Name: ygxB # Def: integral inner membrane protein # Organism: B.subtilis # Pathway: not_defined # 22 495 61 542 552 152 26.0 4e-35 MDVRNWGEWNFLMMNGNSIWRLIGAVLVLIIGLWIAGAASKAVYKGLLKANVDARGRKFF PPDSSVSRIVSKVVKYFIILVTLLVVLELLNFTNVLNPFVGFIAIITSYIPHLLAAALLA AVAHILGSMLKSVVSGFFGSHTIKSKMPNLVHYREVAGNIAYAIVILLFAPSILSSLQIP AISVPISAVINMVIGYLPLLAGAILLIVLGHYVAKFVAKLASTLTSSLNLQRWIGAGMNV SQFVYSIVYFLILFPIAVQALNLLQIESIQVPAQGILNLVMAWIPKILIAAFLLYIGYIL AKIVRNLIITLLSPMDIDSKLNSLMPMFRRKAADAGAEMGVPGGVNPAASVSALPITKWI ATLIAVFVFGFFLVESTNVLDLEFISATFAALMVMLPKFILIVIIVLIGIILAGFAERMI RPGNPLKGFVQPVIIVLAVVIGLTEIGLGSVIITSGYMVVMVALGAAFIISVGIGSIPAV KRFWDKKQNSKDHDNISM >gi|333603965|gb|AFDH01000116.1| GENE 100 104402 - 105262 1070 286 aa, chain - ## HITS:1 COG:BS_yfiE KEGG:ns NR:ns ## COG: BS_yfiE COG2514 # Protein_GI_number: 16077891 # Func_class: R General function prediction only # Function: Predicted ring-cleavage extradiol dioxygenase # Organism: Bacillus subtilis # 5 275 4 275 285 299 56.0 3e-81 MTPVIDPRTEIGYVHLKVGSLARSLPFYQDVIGLKLLKRDGTFAELTADGKKPLVILEEI PGAAKAPKRGYAGLYHFAILLPGRKELGFALRSLIRSGIEVGQGDHLVSEALYLDDPDGN GIEIYADRPRETWRKDANGHYVMATDPVDWESLLELAGEEPWGGMPAGTQIGHVHFHVSD LRAAEAFYCGLLGFEITLRFGPAALFVAAGGYHHHIGLNTWAGAGALPAPANAAGIRWFT VVLPDNGELERVLARLREGSVDAISREDGWLVTDPSGIGVLLTVRD >gi|333603965|gb|AFDH01000116.1| GENE 101 105492 - 107426 2055 644 aa, chain - ## HITS:1 COG:BH3141 KEGG:ns NR:ns ## COG: BH3141 COG0441 # Protein_GI_number: 15615703 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Threonyl-tRNA synthetase # Organism: Bacillus halodurans # 1 622 4 626 645 920 71.0 0 MIKLTFPDGSVKEYAPGTTVEQVAESISTGLRKNAVIGVVNGRQVDLNAPIEEDAELKIV TLDSEEGVEVLRHSTAHLMAQAIKRLYGERAVKLGIGPVIEDGFYYDIDIENPLTPEDLT KIEKEMAKIVQENLPIVRRVVSREEAIAIFEELGDPLKLELIRDLPEDSVLTIYDQGEFF DLCRGPHLPSTGKIKAFKLLSVAGAYWRGDSKNKMLQRIYGTAFPKKAELDEHLHLLEEA KKRDHRKLGRELKMFTFSKEVGQGLPIWLPAGAKVRRIMERYIVDLEERLGYQHVYTPVL ANVELYKTSGHWDHYHEDMFPKMVMDNEELVLRPMNCPHHMMVYKSDMRSYRELPVRIAE LGTMHRYEMSGALTGLHRVRAMTLNDAHIFCRPDQIKEEFARVINLIRHVYEDFGIKDYR FRLSYRDPKDTEKYFPNDEMWEMSQRMLREVVEEMNLPFYEAEGEAAFYGPKLDVQIRTA LKKEETLSTVQLDFLLPERFELEYIGEDGQKHRPVVIHRGIISTMERMTAFLLENYAGAL PTWLMPVQAKVIPVSPSYEAYANDVTEKLLAAGIRAEADNRNEKLGYKIREAQLEKTPYM LVVGENEMNSGTLSVRKRGEGDLGVHSLAHVVGLIQEDVANKSR >gi|333603965|gb|AFDH01000116.1| GENE 102 107790 - 108764 977 324 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_4793 NR:ns ## KEGG: Pjdr2_4793 # Name: not_defined # Def: sporulation protein YtxC # Organism: Paenibacillus # Pathway: not_defined # 66 314 67 305 315 174 38.0 3e-42 MSFVQFVFNNSAVFDISALQSRIESRLALLNQEGNPVRVVRDTLEQCTMLRIEGTIGGKK HQPKPESVIEAAAAAAAEQIVEGEEERLIRKLLVNTFHYKDPEEAAKIGRYCRQFLNGEE EGESAAGEYGLDDYLDWGPIDGMKLRAGKISEPLKALLQEGQRVNLPGFITFRLQEYMDE LKEVVEYAIDEYVMDQQYQEFISLLQYFVYIQETKTAAAHLIHKEGAEFTILDEHMQPID TSKMEASFTLEMIEKDISFEDMIVSTLISVSPATIYIHTREPDLPVIRTIMQIFESRATI CSYCGICRTKLAGNSDSGSPSPLT >gi|333603965|gb|AFDH01000116.1| GENE 103 109113 - 109814 682 233 aa, chain + ## HITS:1 COG:CAC0564 KEGG:ns NR:ns ## COG: CAC0564 COG0745 # Protein_GI_number: 15893854 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Clostridium acetobutylicum # 1 232 1 230 233 291 63.0 7e-79 MGKETILVVDNEKEIVELIRIYLTNEGYETVSAGDGLEALDVLKSREVDLIILDIMMPRM DGVQACLEIRKEKNMPILMLSAKSEDMDKILGLTAGADDYLTKPFNPLELMARVKSQLRR YKRLNAPMPSETLSNRIELDDLIIDTATHEVHVEGRPVKLTPREFSILELLGRNRGIVFS TERIYETVWNTPYFESDNTVMVHIRKIREKVETNPRQPKYIKTVWGVGYKIET >gi|333603965|gb|AFDH01000116.1| GENE 104 109804 - 111642 1223 612 aa, chain + ## HITS:1 COG:CAC0565 KEGG:ns NR:ns ## COG: CAC0565 COG0642 # Protein_GI_number: 15893855 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Clostridium acetobutylicum # 231 609 101 497 499 307 41.0 5e-83 MKPNRSRMFGKIWGLLVRGIVRPVILCKQNVMRSIRMQLILAFALCIGVAAAAGGLVSEL TKSWRTASSISYIQDKEITENQVHRLVERLEQIQKYGGDADKYPAAKKESVLKEPPVSDP EVQDPKETGGTGTGIGSGPDHQADSGSSAASAVPKSAAPSPMPEPAVPDGTGTNGKTAPE PAGPGAAGADKKTSTPGKADEQPAPSFFSVNPADIQSLLDDEADRPGRKSLYLIDAAGKV LYRTKGSGESRFDIPQLIGSAMDSGGTFRESRENREFTFMYPITLNGTQSYLVAKAIPEA QISYYEQDTSLPLIAGLATFLGLFYWITRRKMQIIEEMAQGLVQMSQGNLAHRVPERSRD ELGVLAGHMNSMAFDLQHSLEEERKSQRLKNELITNVSHDLRTPLTLIIGYLRLLKDKDY RDEEQAANYMQIAYGRAEKLKILIDELFEFSRMTNEGVPLAKKSVCVNDLIYQLSEEYIT IAEQNGLTLRLVLPPLRLFVSMDPDQMIRVFENLLTNAVKYSPKPSTIEVIVQEEGHDVK VTVINESDLSETAELDRLFDRFYRMDAARSSDTGGSGLGLAIARSIVEAHDGRIWAESRG KSIMFHVKLRRY >gi|333603965|gb|AFDH01000116.1| GENE 105 111775 - 112908 1162 377 aa, chain - ## HITS:1 COG:BH3143 KEGG:ns NR:ns ## COG: BH3143 COG1060 # Protein_GI_number: 15615705 # Func_class: H Coenzyme transport and metabolism; R General function prediction only # Function: Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes # Organism: Bacillus halodurans # 4 377 3 370 370 512 64.0 1e-145 MNPIDRILDKSLAGGRIDLEECVTLLESDQIEKMGHVANQIMLKHHPEPITTFVVGRNIN YTNVCDVYCRFCAFYRAPGSTEGYVLTNEDIFRKIQETLDVGGTEILMQGGTNPDLPFSY YTDLLREIKQRFDITMHSFSPAEIWKMKDVSDGLSLEEVIRQLRDAGLDSLPGGGAEILD DRIRMKISKKKGSWRDWMDAMETAHRLGMNTSATMVYGFGETMEERAMHLLRVREAQDKC IQNGYDSLGFLAFILWPVQPDNTNLRVEKTKPEEYLKMLAISRIMLDNIPNFQSSWVTMG PEIGRQSLHYGCNDFGSTMIEENVVSAAGTTHKVNISSTLEMIRAAGKIPAQRNTKYEIL RVYDENSVVEKDFIMQN >gi|333603965|gb|AFDH01000116.1| GENE 106 113176 - 114333 1204 385 aa, chain - ## HITS:1 COG:BH1628 KEGG:ns NR:ns ## COG: BH1628 COG0626 # Protein_GI_number: 15614191 # Func_class: E Amino acid transport and metabolism # Function: Cystathionine beta-lyases/cystathionine gamma-synthases # Organism: Bacillus halodurans # 1 385 1 385 390 474 59.0 1e-133 MSTDKKLGTKIIHFGGEIDKTTGASSVPIYQASTFHHFSLDNPPEFDYSRSGNPTRQALE DYIALLEGGARGFAFASGMAAISSAFFLLSSGDHVICTEDVYGGTYRLLTAILTRMNIET TFVDMTDPEKVKAALKPNTKAVFLETPSNPTLKITDIAVICAWAKENGLLTMLDNSFMTP YYQRPIEQGVDIVLHSATKFLSGHSDVLAGLAVVANESLGRRMKQIQNGLGNVLGPQDSW LLMRGMKTLKVRMEGSEQNARRLAEWLDSHPAVGAVYYPGLPDHPGREIHEKQSSGYGAV VSFDVNGGERARKLLSEVKIPLVAVSLGAVESILSYPAMMSHAAMSREVRLERGITDGLV RYSVGLEDIDDIIADLDAALSHLQG >gi|333603965|gb|AFDH01000116.1| GENE 107 114330 - 115499 1225 389 aa, chain - ## HITS:1 COG:BH1627 KEGG:ns NR:ns ## COG: BH1627 COG0626 # Protein_GI_number: 15614190 # Func_class: E Amino acid transport and metabolism # Function: Cystathionine beta-lyases/cystathionine gamma-synthases # Organism: Bacillus halodurans # 3 385 6 374 378 428 57.0 1e-119 MNIESRLAQIGSVSEPVTGAVSFPVYQSTAFRHPRLGESTGFDYARTKSPTRSVLEDAIA DLESGDAGFACSSGMAALQTIFTLFSQGDHLIVSLDLYGGTYRLLEQIMSRFGVSASYVD TNDVEALEEAYRPNTKGILIETPTNPLMMVTDLKLVCGWAKSKQLLSIVDNTLLTPYLQR PIELGADIVIHSASKYLGGHNDVLAGLIVTKGQELSEQMAFLHNSIGAVLGPQDSWLLMR GMKTLALRMERHEHNATTIARYLQWHPLVTDVYYPALESHPGYAIQNRQSSGNTGIFSFK VTDARLVEPILRHVKLIAFAESLGGVESLMTYPAVQTHADIPLEIREKVGVDDRLLRFSV GIEHVDDLITDLAQALEQAQAEVEGDNQA >gi|333603965|gb|AFDH01000116.1| GENE 108 115538 - 116482 970 314 aa, chain - ## HITS:1 COG:CAC1825 KEGG:ns NR:ns ## COG: CAC1825 COG1897 # Protein_GI_number: 15895101 # Func_class: E Amino acid transport and metabolism # Function: Homoserine trans-succinylase # Organism: Clostridium acetobutylicum # 1 301 1 301 301 420 65.0 1e-117 MPIKIPDNLPAKEVLNQENIFAMDETVAYHQDIRPLRIAILNLMPTKETTETQLLRLLSN TALQVEFVLLHPKTHTSKNTSPEHLEMFYKTFEDIKDERFDGMIITGAPVEQMDFEDVHY WDELKNIMDWSVDNVTSTLHICWASQAGLYHHFDVPKYTVDKKVFGVFPHMIAEENVKLL RGFDEFFFVPQSRHTEVRREDIEKDERLVILSESEEAGIYIVATKDGKQIFVTGHSEYDP LTLKWEYDRDVNKGMDVEIPKNYYPNDDPSKKPMITWRAHANLLFSNWLNYYVYQETPYD LNAGRELSALSACL >gi|333603965|gb|AFDH01000116.1| GENE 109 117214 - 117459 212 81 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_5107 NR:ns ## KEGG: GYMC10_5107 # Name: not_defined # Def: magnesium and cobalt transport protein CorA # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 64 1 64 311 105 76.0 8e-22 MKTRLVHKGAFTLVEDIHEALTPPESGFYWIDADVDDLEQLQPLFHLHDLAVEDCLSEEE QRPKNRNLRHALFYCNQQHPV >gi|333603965|gb|AFDH01000116.1| GENE 110 117380 - 117700 115 106 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MHQDIFFKLLDLIFDPVSDNNVVVNDKVNQMIQEAVRAVNFFIPKKGFDGTELLDFLSRN GNDEMPAQKNIECAKKDFFIIKPDAVDYNKIVRVVNFDFWAAVLLR >gi|333603965|gb|AFDH01000116.1| GENE 111 117695 - 118153 472 152 aa, chain + ## HITS:1 COG:all4110 KEGG:ns NR:ns ## COG: all4110 COG0598 # Protein_GI_number: 17231602 # Func_class: P Inorganic ion transport and metabolism # Function: Mg2+ and Co2+ transporters # Organism: Nostoc sp. PCC 7120 # 5 152 219 371 380 115 34.0 3e-26 MHTKKSHLNEIVGLRGEILWLKKMLVPQRDVVATLNRKELKLIDNQLQKYFGDIHENAVK IVDTFDTLRDLMGNLREAYQSSVANRANEIMRIFTALTTIFMPLTFITGIFGMNFTDILG LLTVPYADLFIFGFMGVLGLCMFLLFRKKGWI >gi|333603965|gb|AFDH01000116.1| GENE 112 118249 - 120249 1444 666 aa, chain - ## HITS:1 COG:BS_pbpA KEGG:ns NR:ns ## COG: BS_pbpA COG0768 # Protein_GI_number: 16079555 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Bacillus subtilis # 23 634 20 660 716 173 26.0 1e-42 MKSPYTEQDPAKREADKRIHFTLRINIFFFATFALFCVLIVKLSYLQFVKGPELQIAKTN GMNTDTAIPPIRGNILSKDGVPIATSNSTESLYFRVEGGTKNQDPIIETAKKLEKILGDL GDKNLPKMTMENIMKAMDLDFDINKQKIKPKTPYSEPRRIKANLNKEEVAYLLSHRDELH GVEVVEESIRMYDQRKIAAQLVGYLKKYDDTANLNFYKSRQDQGYLLRETVGFDGLEMMY QDELRGMPGKKSYPVNAAGKIVGNGTLEKPEKGKNLRLTIDTNVQLAAQQAIMDQLKWLH NPPSAYARYAAPYARSGYAVAMEVDTGKVVAMASMPDYDTNLWTGGMDPKIYPQVKYFVN NGTIRNSPPNFPDDQQKRHPSSILYLGSTIKPLSILIGLKEGLITPGSYYNDNAPFVYGK DNSTVRNSDNHYTGMISPTRAIEVSSNTYMSAKIGIPFYNKYQRKSGEAWEKQLAEFGLG VTTGSGLPWEYDGMSEIDAAAKTSSYQSAMVFASWGQNGKYTTLQLTQFAATLGSRGKRV KPQFVEEILDSDGKVVKGYEPEILNQVDLPKTYWDTVINGMKSGAEGIDKLPYPVARKTG TSTQQVSGGTVDNAVFISFAPAQNPKLAIAVVVPEGGYGRYGASPIAAKIYEAYDQYVGG LSTPKK >gi|333603965|gb|AFDH01000116.1| GENE 113 120470 - 121498 1054 342 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_1417 NR:ns ## KEGG: Pjdr2_1417 # Name: not_defined # Def: HRDC domain protein # Organism: Paenibacillus # Pathway: not_defined # 1 332 1 326 327 233 38.0 1e-59 MNVIYLTTLEKQVEEGKVKQAQFFAGEKTGVWQAMWNEVNDNGKPIQDIWYEGISWEELV SAIKKGLQLKLAEGFKPLLRGIGEEQAGMSAKAEMTQLLQYYGEVHADETLYEELRAWRR EQSFKEGRSPFILASNRMLQMIAAFCPQSLEELLHIPGFGQNRASKYGGDVLRITRDKQR QTDFPLDWVAAATDRSQFEAWMNGQMERRVQKEAARQSGKRRLLEAMASGGSLAQLRTEL SFTSRELVALLEELERDGYDVLAGIESELAKVPSEQLAEAERLFAEMGDRYLKPILQGLY GEQLPDAQTADGVYEWLRLLRFKTRKRKEEAAKERDSGQKAG >gi|333603965|gb|AFDH01000116.1| GENE 114 121658 - 122536 738 292 aa, chain - ## HITS:1 COG:no KEGG:BBR47_10520 NR:ns ## KEGG: BBR47_10520 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 5 278 7 284 287 162 36.0 1e-38 MSPHLFKVESVIRQGQGVCNEDALLLAPEEGLFGVIDGVSGLTPYRDALGRTAGRIASAL VASCFADAGGADLERTTLEANARLHGEMERLQGRSEDTGSRWGAVHAVVRVDEDRVAWVQ SGNCMVYAVYEDGVVRAVTRDSVEPHDERALALWRREYPGEWERRVQPPEVTEALRANRR RANRPGGYSVINGDDALARHLESGNIARSGLAHLLLVTDGIYPWRDEHRRSAEEWVRAVI RAGLEAYVDGLEAFEEDDPECRSVQRFKRSDDKTGILLSFSKESRSDSKTVR >gi|333603965|gb|AFDH01000116.1| GENE 115 122723 - 122827 121 34 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTKAAQDRRVQKSVRIVLSILLLGSKSAHFPEKR >gi|333603965|gb|AFDH01000116.1| GENE 116 123147 - 123440 289 97 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_1416 NR:ns ## KEGG: Pjdr2_1416 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 1 96 3 98 98 124 65.0 1e-27 MSELDFLYDHTEDTSTRFVCFVGSSLHRFDLAVTNTNRFYGKKMITDLQSGKTAIIGPDD LNEEGYLEHVYKISEEEAEELRSFLFQIVGTVNFTDI >gi|333603965|gb|AFDH01000116.1| GENE 117 123514 - 123777 238 87 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_1692 NR:ns ## KEGG: GYMC10_1692 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 7 81 7 81 92 82 68.0 4e-15 MGDEFLKEESRGADLSTVESQRNDTIPEEFPEGPYGSSVLSESLGKSTPWRDDQRPTNRF RYENRELHYDIERDYPGDDQSEETPGP >gi|333603965|gb|AFDH01000116.1| GENE 118 123920 - 124309 607 129 aa, chain - ## HITS:1 COG:BS_yshE KEGG:ns NR:ns ## COG: BS_yshE COG3766 # Protein_GI_number: 16079909 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Bacillus subtilis # 4 128 10 134 134 76 34.0 1e-14 MIALNILVSFIVIVALQIIGMVIFNWITPFNDMEELRKGNKAVALALGGKFFGTAIILGV AAYTNSSIFHMAMWFAIGYVCLLLTYFVFDLLTPGIKLSEQLKDGNVAVGIMLFAIYVGV AFSMSSLII >gi|333603965|gb|AFDH01000116.1| GENE 119 124306 - 124980 674 224 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_2024 NR:ns ## KEGG: GYMC10_2024 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 39 224 39 224 224 211 52.0 2e-53 MSRPAMNRRYGTGKKRSRLAIGIFSALVLLLVFGLIGACSDKKSAGGATASGGATTESSV VPWDYKVEQAKVGDLIGGDMTLLPNNDMLPNDGNFATGDSVWVMSFMTAEMKTGADGKND VKLSGWTPLKTFKTESEAKADMSQLKTEIQTEVDLIGVYKTQYGDKHRDFAVVSMPSGHK VKQPISDERYTAIKDKKRVKIVLEEVHDFSNYDLAMSKFRGWAE >gi|333603965|gb|AFDH01000116.1| GENE 120 124977 - 126182 899 401 aa, chain - ## HITS:1 COG:ECs5162 KEGG:ns NR:ns ## COG: ECs5162 COG0754 # Protein_GI_number: 15834416 # Func_class: E Amino acid transport and metabolism # Function: Glutathionylspermidine synthase # Organism: Escherichia coli O157:H7 # 27 394 20 381 387 90 27.0 7e-18 MGSRTFRVLGQPHKDRKAYVAELGRMGFTWADLEQEQYWIDQLVLMDRDVYEELNQASRL LWDIFDKGARFVIGRRDLYDMLSIPEVLWDGLDGLEPGPKGLLSRYARFDFSISQEGDIK LLELNADTPTGYVEASVVTPWMCSRYGGHSPNTAMPDLVRHAWSEEMPEAAACIDYGKHL EDSGTIDMLIRHSGLEVRPVDCLELWVDEGILKDGENREIRSMFALYPKEWMGVDDGGEA LAYSIENGHLRLFNPLHAIILQSKGLQAVIWGLHEMMAPLFTPEEHRTIERYMLPTYNQP VLESSYVSKSMFGREGGSVRMYGASGEIDIQDEDGFDTSTLFTNVYQARADLPQISLTRG EYRLLTGMFVINGQPCGLLGRAGGLITGNASHFVAIGVEQK >gi|333603965|gb|AFDH01000116.1| GENE 121 126182 - 127150 784 322 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_2022 NR:ns ## KEGG: GYMC10_2022 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 56 230 4 180 224 105 38.0 3e-21 MNDNLNNNAGGLNDTEAAETLEAVAGECAAEAVAADTAGAPEPDSPEAVLAARAAEEAKA AEARASRRTRTPKPLRVLNTSLGVVLAANLLLVPAVYAESKAAEPQIIEWSNEDVKTYFD PSADWSIPLPEQLDKPGATPTPTPSAGVGTGGTGAGVGTAAPVVYNHGLDWTDLMLYHLI FNSGGSYSSSGWSSSRPSYDYRTKKPYSVPTYDSTKFQNKQTANSTVKPKTSNTTGAFNS KSTINSRNNSSKSSSTTGSSSTKSSSSTGSSGSGSTSTKSGSSSSSGSVSSGSSSKSSSS SSGSIGGKSGGFSSSGSSSSGS >gi|333603965|gb|AFDH01000116.1| GENE 122 127176 - 127391 313 71 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_2021 NR:ns ## KEGG: GYMC10_2021 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 4 66 6 68 71 65 50.0 6e-10 MEANVLIIEKLENGELKTIDERTWNTTMLAMMEHANFLLVGGKEYEMIEGRLDVENQKLE VLVLPINKAIE >gi|333603965|gb|AFDH01000116.1| GENE 123 127758 - 128663 1008 301 aa, chain - ## HITS:1 COG:BS_ypcP KEGG:ns NR:ns ## COG: BS_ypcP COG0258 # Protein_GI_number: 16079259 # Func_class: L Replication, recombination and repair # Function: 5'-3' exonuclease (including N-terminal domain of PolI) # Organism: Bacillus subtilis # 14 295 6 287 296 318 53.0 6e-87 MMGEIFVTQTRPSVLLVDGMALLFRAYYASAVTGYIKRTSAGVPTNAVYGFVRYFWDAVQ TFSPTHVIVCWDMGAKTFRSEQFTDYKANRAAAPEDLIPQFDLVKEVVDSFGVPNVGMSG YEADDCIGTLAHAYKDSADVFILTGDHDLLQLVDDSVSVVIMKKGHGNYAVYTPDLLLEE RNLSAAQIIDLKGLMGDTSDNYPGVKGIGEKTALKLIQQYGTIEGILENLSELPKGVRAK IEAQLDMLHLSRELATIFLKVPVACALEECCWAIDHERVLTKFEELEFKGLAKLVGQPAF L >gi|333603965|gb|AFDH01000116.1| GENE 124 128761 - 132033 3205 1090 aa, chain - ## HITS:1 COG:CAC0354 KEGG:ns NR:ns ## COG: CAC0354 COG5542 # Protein_GI_number: 15893645 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Clostridium acetobutylicum # 14 401 143 519 544 183 31.0 2e-45 MQIGETMPKEANVRHAMFALALAAAVLIRFLVAPNVFGYEADVRTFMAWADRAFTVGFGN LYTDPGYFLDYPPGYMYILYLIGAAHHLFGIEWGTGLSLVLLKTPPMLADLLASVLLYRL ALRSVNVRQAAVLASLYMLNPAVWINSAAWGQVDSLFMLFVLLSLLRVEDKKFPAAAVYL GLAVLLKPQGLLFGPFFLLALLWRVRQKGFGRELAVSAAAGAAAFLLPALPFAWKMEPLW LPKLYFGTLASYPYASLNAFNLLALLGGNFESVDGRLFSLTYGAWGTLLFALSLLFVLVF FAKNMGRKGAGLYAGFLFAASAFMLMTKMHERYLFYGLLLLLAAYLRSKDRRLLVLFAGF SVTHFANVGYVLWKSAKGVFHIPKHDPVLLLVSLLNVILFVMAWQAARTWAQKSAGTDAR PQGSADAGKGLFGGVMNRGSVVWDRDGAVAARQPLLTKKDGWLMGGITVVYAVIALVNLG SFDAPQTFWKPASQTEAVVADLGATKHLTRIQDFAGAGEGEFRFEFSLDGVTWNEPIDVK SDYTKVFTWNVVKTERDARYVKITPLATGFALHEAAFFDGTSDTPLPVSVLPGDDTQNSG EHRKVFDEQAIVPPAPGYKDGTYFDEIYHARTAYEHLHRIEPYESTHPPLGKILISAGIA LFGMNPFGWRIVGTLFGVAMLPLMYVMAKRLFGRTEYAAMATFLFAVDFMHFAQTRISTI DVYGVFFIMLMFAFMYRYTTLSFYDVPLRKTLLPLGLAGVTFGIGAASKWIVIYGGAGLA VLLALSLWERFGEYRQARRSLAEWSREASTAEGPDTVWSGRGPAGAADASGVSAVSGETG QPRIPGVFERFHTAESSDEDRERWRHIVRKFPRNTVYTLLFCVVFYVLIPAAIYAASYIP FMLVPGPGHGLADVVTYQQHMYSYHSGLVATHPFSSSWWEWPLMLRPIWYYKGEFVPPGS MSSIVSFGNPLVWWPGLICVLLALWAAVKTKNKPLRFLLIAYASQYLPWMLVPRLTFIYH YFAMVPFMILMITFFLRHLIETRPKLKRWIYVYMAGAAVLFAVFYPLLSGLVVDDSYTGW LRWLPGWSFF >gi|333603965|gb|AFDH01000116.1| GENE 125 132257 - 133429 1316 390 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|167464264|ref|ZP_02329353.1| ## NR: gi|167464264|ref|ZP_02329353.1| hypothetical protein Plarl_17184 [Paenibacillus larvae subsp. larvae BRL-230010] # 1 390 1 390 390 610 77.0 1e-173 MDGLCLRMTIHPFCERFGLATVALKVQDLLNYTMIDAIVQRKLSKMQRRKISNYLQEREL DQVFFGPVTLSLRDVSQLTRTSEELYLRHGSKLSIIDGQHRILALGFVNEQMQKEVKRTE RKLASLRVRHRKETDNRELADEIAQVSGLLEQMEARRLGLMESELAVQIYIGLNEVEEQQ LFGDINSKVQLVSKELGHSFDSVDPLNLVIQQVVDHNMLLKEAGVEKRSNLTAFNRNFTC LSWMYSTAVMLFSGKMQSSYELQRKIRKETATYVEILHQFYNTILPMMPEQPGLVQVTSA NRVMQESIALYANQFLFRDGVYNPDWTSCLRILEGFDWTHGNEELIYIFGSLDNGKLNLI HEKSLRKHGKLVSFFLEGIEPDGLKSASLA >gi|333603965|gb|AFDH01000116.1| GENE 126 133429 - 134565 997 378 aa, chain - ## HITS:1 COG:no KEGG:PPSC2_p0508 NR:ns ## KEGG: PPSC2_p0508 # Name: not_defined # Def: DNA sulfur modification protein DndB # Organism: P.polymyxa_SC2 # Pathway: not_defined # 22 222 18 224 380 69 27.0 2e-10 MDSIFSLSELLSQQKPSSLVEIPGVLGQTFGQATLSTTLPISKLFSIYEVDLEVQRAIIP RNLSKLMDYVSLYLDNHQPIYFPGVIFSARGAGSYDSEQRVFQLQPIEKLYVVDGQHRLA AFQRLMETLQSQMARAKDRREYDRMEVITEKLSRLYAFPVSTMIYLDIDARQERQLFSDI NKLPRKIGGNLAVLRDQRRFYHVTASQLVEKAPVMQHIPVDMFSERGKAPEFLFTYHLLI EILVALFEGRMKSGARNNGYHYEEEEVTDHLSISSFYFQQLLKYLPEPVKGEPAWSENIQ IALALFFHEEATKSAKFNRYALEYATKILPHIDWNAIFSGDEKDRLPRRSRIMKAYQYIR SFYQEQHLFLISDKEDVG >gi|333603965|gb|AFDH01000116.1| GENE 127 134663 - 135856 963 397 aa, chain - ## HITS:1 COG:alr2765 KEGG:ns NR:ns ## COG: alr2765 COG0436 # Protein_GI_number: 17230257 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Nostoc sp. PCC 7120 # 6 385 9 388 403 351 45.0 1e-96 MKAYGSTRLGSLGSAIFAEVAQWRREAEERGVDVIDLGIGSPDLPPSSRVIEALAEAVKN PQAYGYPGSEGTPEFRRAAAGWMNRRFGVTLDPQREVLALMGSQDGLAHLAMALCNPGDT ALVPDPGYPIYAASLVLAGVQPVLMPLRESNGFLPQLESIPPETAEKASFLLLSYPGNPI PEAADRAFYEKALAFAERYDLLIVHDLAYSELAYGGYKPMSILELEGAKKRAVEFHSLSK SFNMAGCRIAFLAGNAEAVDALRRLKSNIDYGVFLPVQQAAVVALEEETSFPSSISAVYE RRRDALVDGLRSIGWHVSRPKATMFVWARIPKGWTSRHISREILERAGVAMIPGDAFGAE GEGYVRIALVQPEERLREAVSRIGEIWQSVSERERNT >gi|333603965|gb|AFDH01000116.1| GENE 128 135887 - 136960 1095 357 aa, chain - ## HITS:1 COG:RSc2524 KEGG:ns NR:ns ## COG: RSc2524 COG1994 # Protein_GI_number: 17547243 # Func_class: R General function prediction only # Function: Zn-dependent proteases # Organism: Ralstonia solanacearum # 30 214 13 197 241 143 41.0 6e-34 MPEKQSSKSSKKNPLWVLGAIGAFLLKFGKFGKFGATIISIAITIASYAIIAPLPFAIGL VAMIFIHEIGHVLAAKQKGLPVTAPLFIPFLGALITMKRNPRDAVTEAYIAYGGPLLGTI GATAAFALGVYTDSNLLISIAYTGFFLNLLNLLPIHPLDGGRISTAVTRWLWLVGLIGGL AVILYLRSFLFLIIWALFAWDLYKKFVKFRDKPQLMHFQPRFDMTAHHLLAHGYMIPGED HRRDLAFTTYSELSGDEAGVQMVHTSWDAIEFETKFALPRQALVHRVQVVKIERVTREDG LHLVLHFDVELEPFENDAYYEVPTASRWKFGVAYFALAVYLLAMMNWVHRLLPAAAY >gi|333603965|gb|AFDH01000116.1| GENE 129 137009 - 137365 411 118 aa, chain - ## HITS:1 COG:BH3485 KEGG:ns NR:ns ## COG: BH3485 COG1393 # Protein_GI_number: 15616047 # Func_class: P Inorganic ion transport and metabolism # Function: Arsenate reductase and related proteins, glutaredoxin family # Organism: Bacillus halodurans # 1 117 1 117 119 142 58.0 1e-34 MSVTIYEYSKCSTCRSALKWLRAKGLDPVTVPIMEQPPTAEEIRVLVRNSGLELKKFFNT GGEVYRELGLKDKLGSMTEDEQLALLASNGKLLKRPIVTDGSRVTVGFKEADFEKAWG >gi|333603965|gb|AFDH01000116.1| GENE 130 137718 - 138671 927 317 aa, chain - ## HITS:1 COG:lin1957 KEGG:ns NR:ns ## COG: lin1957 COG0564 # Protein_GI_number: 16801023 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthases, 23S RNA-specific # Organism: Listeria innocua # 28 317 33 299 302 212 41.0 1e-54 MVPPDEEGFYLKTILQNRMGLSRKLLSRLKLTEQGITVNGKREYINIKVNSGDVIEIRMQ EEESEDILPQDLPLEILYEDEHLLIVNKESGMIVHPTHGHYLNTVANAAVHHWKERGENV RFRPVHRLDQETSGVLAIAKNPYVHQQISEQMIAHSITKEYLAIVHGTVVEDRGTIDAPI DRDPEQPHVRIVTPSGYRAVTHYETVRRYDGITLVRLMLETGRTHQIRVHMKHLGHPLLG DKMYGPDFAAGADCADGVPGAPSAVPSPAVDGEAVPALARQALHAYRLGFVHPGTRERVE FTAPLPADMQAVLDACR >gi|333603965|gb|AFDH01000116.1| GENE 131 138698 - 139267 495 189 aa, chain - ## HITS:1 COG:BH1595 KEGG:ns NR:ns ## COG: BH1595 COG2096 # Protein_GI_number: 15614158 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus halodurans # 1 189 1 190 196 210 58.0 1e-54 MKIYTRTGDAGKTGVIGGRVDKDDERVEAYGTVDELNCYLGQAMSFMDPEKFADLLEDLL TVQHELFDCGSDLALLKKELRPFKVTAEMVDNLETWIDKYDAETPDITRFILPGGSRSSA ALHICRTVCRRAERRVVTLARTQEINVEVRRYLNRLSDLFFTIARTANFREGQTDVEYVR SGEVFRRKK >gi|333603965|gb|AFDH01000116.1| GENE 132 139445 - 141127 1208 560 aa, chain - ## HITS:1 COG:CAC1374 KEGG:ns NR:ns ## COG: CAC1374 COG1492 # Protein_GI_number: 15894653 # Func_class: H Coenzyme transport and metabolism # Function: Cobyric acid synthase # Organism: Clostridium acetobutylicum # 40 560 4 490 491 448 46.0 1e-125 MRNSTHTEGRTGTVPTHLDREADQPEGNGSGTDGTRARTLMVQGTASDVGKSILTAALCR IFVQDGHRVAPFKSQNMSLNSYVTPDGKEIGRAQGVQADACRIPATTDMNPILLKPSQDM RSQVVVHGKPYQDMDARAYRESYLPLAEKVVCDALERLRRTVDLVVLEGAGSPAEINLKD RDIVNMRMAKWADAPVILVADIDRGGVFASIVGTLELLEPDERERVKGFVINKFRGDVSL LKPGLDWLEERTGKPVLGVVPYYPKLGIEDEDSASLDSKRRLEPAPAAQQDGQRPDVLDI AVVRLPRISNFTDIDPLHEEPDVSVRYVGSAAEWGNPDIVLVPGSKNTMSDLLFLRESGL ADRIVRHAAGEGRVAGICGGYQMLGEALSDPLGTESDYRGDREGLGLLPVATEFTPEKKT VRAEGSCGLFRQMPDLPVDGYEIHMGVTRMTDETSERPFRLRASLAGSGDEAGAADGLHP EGASAFEGRVWGTYLHGILHNDDFRRCWLNEARQSKGWEPLSAELRFREKREEAFDRLAG HVRKHIDMDLLYEIAGLTAE >gi|333603965|gb|AFDH01000116.1| GENE 133 141130 - 142245 888 371 aa, chain - ## HITS:1 COG:STM0644 KEGG:ns NR:ns ## COG: STM0644 COG0079 # Protein_GI_number: 16764021 # Func_class: E Amino acid transport and metabolism # Function: Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase # Organism: Salmonella typhimurium LT2 # 6 356 7 357 364 221 40.0 1e-57 MLERYGHGGDVWTAEEKFGRGREQFLDFSSNMNPFGPPDAVEGVLRSGWKHIVRYPDPAV RELTGKIAAKYGVPAESVLVGNGAAELIDLIVRVLQPEVTGLARPSFSEYEDAVLKTGGR IHGIPLRAEHDFLLQRADAEEAVKRSDLLFLGHPNNPTGRLLSRELLNDLAGSGHPLILD EAFLDFVPDEKNVTLLRLAAESKHVAVIRSMTKFYAIPGARLGFIVAHPDVIARMSRLQV PWSVNYFAQLIGCAVLEDEAFHAKTIRWLQEESPWLADKLAGLGLSVTPSDTNYLLCALP EHSLIDVRILQEEMGRRGVLIRDASLFEGLGTRYFRTAVKLRGDNERMLAALSDVLKAAQ AGEISFERGGR >gi|333603965|gb|AFDH01000116.1| GENE 134 142422 - 143270 740 282 aa, chain - ## HITS:1 COG:FN0912 KEGG:ns NR:ns ## COG: FN0912 COG0368 # Protein_GI_number: 19704247 # Func_class: H Coenzyme transport and metabolism # Function: Cobalamin-5-phosphate synthase # Organism: Fusobacterium nucleatum # 11 266 3 260 278 109 31.0 5e-24 MAAELKLWLFGLITAVQFLTRLPLPVRIEWTPAVLRRSLAFYPVVGMILGLLLTGSGWVL EKTLPPLPAAALLLCLWIGLTGALHLDGLMDTADGLLSHRSRERMLEIMKDSRVGAMGVI VCVAVLLLKWSVMVPLLTDGALTGSWILLLVPVWSRTFMAAAVALWPYARSGGGLGGFFE GEKKPFALLGAAIALFLSAGAVAFFHESGGTLSLKPSLHVLEGAGPVWWGIMLLMVTFAL GGVLAAWMAKKLGGLTGDTYGALNELLEALLLLAAAFVLHLT >gi|333603965|gb|AFDH01000116.1| GENE 135 143255 - 144358 943 367 aa, chain - ## HITS:1 COG:BH1588 KEGG:ns NR:ns ## COG: BH1588 COG1270 # Protein_GI_number: 15614151 # Func_class: H Coenzyme transport and metabolism # Function: Cobalamin biosynthesis protein CobD/CbiB # Organism: Bacillus halodurans # 13 348 9 297 319 236 41.0 8e-62 MIFYSLKEILWMMLAAIAVDLVIGDPKWPTHPVIRIGSLISFLERKLRRDHAARESAPEC AGGVRAEAGAGTGAAGGVPPEAGASADTAGEAASLSPRSLKRRGIVLAAAVMLAAFAAMT AVTAAAAAIHPWLGYAVTTWFISTTVAVKGLKDAARLVAVPLAAGDLAAARKYTGYIVGR DTKNLDEGELTRAVVETVAENTVDGVVSPLFYALIGGAPLAMLYRAANTLDSMVGYKNDR YVHFGWASARWDDVMNWIPARLTGILLILAASVQPRMSAFRAGRSIGRFARLHPSPNSGI PESAVAGALGIELGGRNTYGTVVSERARMGWPLRPRNRGDIDGTVRLLYGATGWLAGGVL CAIWLLN >gi|333603965|gb|AFDH01000116.1| GENE 136 144368 - 144916 505 182 aa, chain - ## HITS:1 COG:mll1308 KEGG:ns NR:ns ## COG: mll1308 COG2087 # Protein_GI_number: 13471360 # Func_class: H Coenzyme transport and metabolism # Function: Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase # Organism: Mesorhizobium loti # 1 175 10 171 171 140 45.0 1e-33 MTGGARSGKSSFAEQLSSRLAAHGTYLATAQIWDEEMRQRIALHRTQREQSGFPWITAEE PMELSAALQACSGERGQGVVLVDCLTLWLSNRLLKAESSPDAAEQVDAAVDELVRTVEAY EGPLVLVTNEVGSGIVPEYPLGRLYRDLAGRMNQRLAQVCGRVFLVTAGIPVELKSRAYR FE >gi|333603965|gb|AFDH01000116.1| GENE 137 144961 - 146010 1176 349 aa, chain - ## HITS:1 COG:CAC1372 KEGG:ns NR:ns ## COG: CAC1372 COG2038 # Protein_GI_number: 15894651 # Func_class: H Coenzyme transport and metabolism # Function: NaMN:DMB phosphoribosyltransferase # Organism: Clostridium acetobutylicum # 4 346 3 345 352 313 47.0 3e-85 MNELQGVIGAIRPLRQEAKDAASVHLDNLTKPPGSLGKLEDMARQLAGITGEVMPDMSRK AIVVMAADHGVCEEGVSAFPQEVTRQMVMNFLQGGAAVNVLARHAGAEVVCVDIGVNADL EHPDLLSRKVRKGTANMAREAAMTREEALQAIRAGIEVADELVGRGVRVLATGEMGIGNT TASSALLSVLGGIAVEDAVGRGTGIDDARWLHKQEVVRRAIEVNKPDAGDALDVLAKVGG LEIAGLAGVILGAAKNACPVVIDGFISSAAALVASRLAPESQPYMIASHQSHEQGHARML EAVGLSPMLHMDMRLGEGTGAALCFTLMDAAGKIMREMASFESAGVSRG >gi|333603965|gb|AFDH01000116.1| GENE 138 146087 - 146872 272 261 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 1 260 1 266 305 109 28 1e-22 MEPIIEVRGAGKSFGGTRVLKDIRFEVKPGEFFGIIGPNGSGKSTLLRLISGVDPLTEGR ILLQGREVAGYARKELARWLAVLQQDALPPLGFTVREVVEMGRFPFQNWLGEDREDAAAL IDRIMRRLDLEPLADRTVENLSGGQKQRVALAKVMAQEPRLLLLDEPTTYLDIGYQMQLM DYVRQWQREEGLTVVAVLHDLNLASLYCERLLVVHEGEGVSIGTPEEIMRSELILDVYGT EPIVLEHPDHGIPQILLRRGD >gi|333603965|gb|AFDH01000116.1| GENE 139 146872 - 147909 1100 345 aa, chain - ## HITS:1 COG:BH1586 KEGG:ns NR:ns ## COG: BH1586 COG0609 # Protein_GI_number: 15614149 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-siderophore transport system, permease component # Organism: Bacillus halodurans # 10 341 19 349 353 252 45.0 8e-67 MKPKWGLWGGVGVLLLLLSIVLSLSLGSAHLPVSQIASILGSKLPWIGDRITPDWPVSSE QIIMKVRLPRVMLAILVGASLSVAGAAFQGVLRNPLADPYTLGVSSGTSVGAAFVIYFGL QTTFFGTWTIPVVGFATGAVSLWIVLRLARTDGKIRMETLLLSGVVMQAFLGSVVSFLVS MSKQVVNEIIFWLMGSLAMKGWSYTTVLLPYFLVTFVVLYSYARTLNLLALGERQAAHLG IHVERTKLIVLITATLVTAAAVSVSGVIGFVGLIVPHLIRLIAGPDYRLIVPLSAVGGAI YVLWADTLARTLLSPTEIPLGVITAFLGAPFFAYLLRKQKKWGRS >gi|333603965|gb|AFDH01000116.1| GENE 140 147910 - 148917 1204 335 aa, chain - ## HITS:1 COG:BS_yvrC KEGG:ns NR:ns ## COG: BS_yvrC COG0614 # Protein_GI_number: 16080371 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-hydroxamate transport system, periplasmic component # Organism: Bacillus subtilis # 40 335 20 313 314 180 35.0 4e-45 MNNERRTARGFKYALLLLVLTMAVGLAACGKQSTDNGTAGSASPAASTAPQTSAKKTQYP LKVTDATGKEFTFEKAPGKIVSVSPAETEALFAIGLGDTIVGVSDFDDYPAEAKTKPKMG GITQPNQESVIASGADIVFTGVSMKKESVEKLRAMGINVFKVEPKTLDDVMKNIQLYGQI TDHQEQAEKVVAKMKEDRQKVTDAVKTVAADKKKKVYIEFSPGWTVGKGEFMDELITLAG GVNVASDITGWKQISEEKIIQQNPDVILYAKDVVDDKTKKSLEELIRGRSGWNEINAVKN NQVIGLDQNTLTRPGPRLTEGLLQMAKAIYPDLVK >gi|333603965|gb|AFDH01000116.1| GENE 141 148965 - 149126 66 53 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFAHVNKKSPLSGDRGDNFRNHEVKRPSVGRPFRFRAILSSKDIVLQTGRQVS >gi|333603965|gb|AFDH01000116.1| GENE 142 149429 - 149899 497 156 aa, chain - ## HITS:1 COG:no KEGG:PPE_01397 NR:ns ## KEGG: PPE_01397 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 14 152 48 187 189 84 32.0 2e-15 MMARDGIPVDAAFKLENSLKALVGDKPSIYLNTSPLFSNEKMIVEMGYGNHGILIIPEEQ FKIYAAEGAFLPLEEHFKQEDYPEGVLEATIEPAGKKKNPPEAPKKETHLYGIPLQYSKW MKDNGVEGKGLVAFMAVNSRNPEQSFEVLKKIAAKS >gi|333603965|gb|AFDH01000116.1| GENE 143 150059 - 150319 222 86 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MAYLEYRLADNSGWYSHDVSDQRWLSKRPAKLASLFHLEEEIQFMRHRLEQMVQSGEAMT SESVIEMSTLLDHKINEYMNLVQKSR >gi|333603965|gb|AFDH01000116.1| GENE 144 150390 - 151586 1326 398 aa, chain - ## HITS:1 COG:BH3350 KEGG:ns NR:ns ## COG: BH3350 COG0436 # Protein_GI_number: 15615912 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Bacillus halodurans # 13 397 6 390 393 485 59.0 1e-137 MINQEEIGSKPKSMQGYLSPLVRDIPPSGIRRFFDLVSGSKDIISLGVGEPDFVTPWHVR EACVYSLERGRTNYTPNAGLPELREAIAEYLYTNFAVKYEPSNEVVVTVGGSEAIDLALR ALITPGDEILVPEPCYIAYSPIVTIGGGVPVGIETFAKDSFKLKPEALRASLTPKSKVLV LSYPSNPTGGIMTYEDWEPIARIVEENDLIVIADEIYAELTYGSKHVSFASLPGMRDRTV LVSGFAKAFAMTGWRVGYMCGHPDLISAMLKIHQYTVMCAPIMGQIAALEALRNGLEEKD RMMESYNQRRRLVVQGFRQIGLDCHEPQGAFYAFPSIASTGLSSEEFAQRLLTEAKVAAV PGQVFGNGGEGFVRCSYATSVSQLNEALDRIGSFVKKL >gi|333603965|gb|AFDH01000116.1| GENE 145 151599 - 152090 577 163 aa, chain - ## HITS:1 COG:BH3351 KEGG:ns NR:ns ## COG: BH3351 COG1522 # Protein_GI_number: 15615913 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus halodurans # 1 163 1 164 164 168 54.0 5e-42 MDDLKHKILDILKEDSRRSPALIATMLGITEEEATAAIRQMEDEHIIVKYATVLNWSKVD SDKVNALIEVQITPERGTGFDAIAERIYLYPEVKSVYLMSGAYDLLVEIEGRTLREVSSF VSSKLSTLDRVLSTKTHFILKKYKQDGIIFDDREDDHRMLVSP >gi|333603965|gb|AFDH01000116.1| GENE 146 152458 - 152766 265 102 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MISLSGEMPKPWVLNPFIQSYTELTSQKVDRKSLKQIGNGRFISAYEDQKLVGIAFCTGD VEWENEVSLSVLILPSYRKRGIESAMLRLLRGKQSAYSRTVG >gi|333603965|gb|AFDH01000116.1| GENE 147 153320 - 154246 820 308 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148988856|ref|ZP_01820271.1| 50S ribosomal protein L9 [Streptococcus pneumoniae SP6-BS73] # 5 306 3 304 308 320 54 3e-86 MSGKLVNSIAELIGDTPAVRLNRLTSEEHADVYVKLEYFNPSGSVKDRAAYNLIAQAEKD GLLKPGATIIEPTSGNTGIGLAMNAAAKGYKAILVMPDNMTKERINLLKAYGADVVLTPA AERMPGAIAKAVELQRGIPGSFIPQQFENKANPDIHRVTTALEILEQTDGRLDAFVASSG TGGTITGTGEVLRERIPGIEIYVVEPAGSPVLSGGEPGPHKLVGTSPGFVPKILNTDVYD EIVRVEDEDALRTTRELAAQEGILVGPSAGATVWTAIQVARKLGPGKRVLCIAPDTGERY LSMGIFGE >gi|333603965|gb|AFDH01000116.1| GENE 148 154340 - 155671 1251 443 aa, chain - ## HITS:1 COG:BS_yqgE KEGG:ns NR:ns ## COG: BS_yqgE COG0477 # Protein_GI_number: 16079556 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus subtilis # 41 441 3 404 430 269 36.0 8e-72 MQQDKYRGRSRLAGWLGADKESAAAQPWEHEADDPASAGQKKRPTIGRLDAQSALLLIEN MLFAAANALSGTFVSIYLWKAKSDFAMIGWFTLTHQLAMALTFWVAGKWVKEHNKMNCLR AGVVMSAVFYLLVLMLGLSSVNYIFLLGAVQGMASGFFWLAFNIVYFEVTSRETRDKFNG WAGLLGAGVGMLAPWISGLIIVHMAGTSGYRVIFSISLGIFVLGVAVSFFLKKRKIEGTY GWTYGFRHLRQGDTPWRPVCAALMAQGFREGVFGFMISLLVYIATTSEQKLGSYALVTSG VSFVSFWLVGRVLKPRYRSRGMLLGVLMVIAAILPFFWKVNYMTLLLFGIGTSLFLPLFT IPMTSSVFDLIGRDEESVKHREEFVILRELALNAGRILGTLLFIAVISQSTSPIVINTLL LVIGSAPFLSWLFMRKVLHPENS >gi|333603965|gb|AFDH01000116.1| GENE 149 155897 - 156415 339 172 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_5122 NR:ns ## KEGG: GYMC10_5122 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 8 168 4 187 187 125 41.0 8e-28 MNEEELKTVCPWCQTEIVWDPEIGPEEECPHCYNELSDYRSIRLGADEEDGDEPAEEVEL AAGPDDFLDWEEDAGYTNEYAEAVQNVLDTQEEAPECSACRELMLHGGRQVTAGTGYTPV IPGPVGRAFLNPGYKLNVFVCPSCFKVETFLAEEDREKLLAVLNPSKEQTDN >gi|333603965|gb|AFDH01000116.1| GENE 150 156436 - 156516 86 26 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKYLWGILFALAVLFMGLGVWYLMNH >gi|333603965|gb|AFDH01000116.1| GENE 151 156574 - 156993 328 139 aa, chain - ## HITS:1 COG:BH3105 KEGG:ns NR:ns ## COG: BH3105 COG3766 # Protein_GI_number: 15615667 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Bacillus halodurans # 20 136 16 132 135 142 64.0 1e-34 MYEEVNQLVSNPYLGALAYFSVAVVAVIVFLTIFEIVTKYNDWEEIKRGNVSVAMATGGK IFGICNLFRFAIENNDSLIRSLIWAGYGFLLLMAAYFIFEFLTPYFKIDEEIQKDNRAVG LLSLMISVSISYVVGACVP >gi|333603965|gb|AFDH01000116.1| GENE 152 157089 - 157763 927 224 aa, chain - ## HITS:1 COG:all2342 KEGG:ns NR:ns ## COG: all2342 COG1842 # Protein_GI_number: 17229834 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Phage shock protein A (IM30), suppresses sigma54-dependent transcription # Organism: Nostoc sp. PCC 7120 # 1 220 1 218 258 110 38.0 3e-24 MGIFKRLRDLTMASMNDLLDKAEDPVKMLNQFLRDMEQDIQEAEVAVAKQIAIEKKFKQQ YEEAEEMVGKRTEQAMKALEQGNEDLARRALEDKKEHQTRFDEMKRQYDIAKTNADQLRN QLAEMKDEFTKMKNKKDLLIARAEAAKAQKHINQAMSGFGTDNAAKGFDRMSEKVLQLEA EAQASGELRSKGKSLDDELDQLGKNDGIDDELAAMKAKLAEKKQ >gi|333603965|gb|AFDH01000116.1| GENE 153 157733 - 157852 59 39 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIETFLKVHRMKKYESYKSTIQTKAGGNSKWEFLKDLET >gi|333603965|gb|AFDH01000116.1| GENE 154 157886 - 160264 2612 792 aa, chain - ## HITS:1 COG:BH3106 KEGG:ns NR:ns ## COG: BH3106 COG1193 # Protein_GI_number: 15615668 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Bacillus halodurans # 10 792 3 785 785 770 52.0 0 MMRENALNTKTFNTMEFHKITHKLSSHAATSLGTAKAAEAKPSGDFEEVKLRLQATDEAF AVDRLKGGAPFGGIRDIRAAVHRARVGGMLNPSELLDIATTIYGGRRLRKFLETMDEQHP VPMLLSWAELLSDNKDTEDRIKSCIDDNAAVMDSASGELSRVRSELRTGEARVREKLEQM IRNPSVQKMLQDALVTMRGDRYVIPVKQEYRSSFGGMIHDQSASGATLFIEPEAVVTLNN RIRELKFKEEAEVEKILRMLTSQVAEIEEDLLSDVELLAQLDFTFAKAGLAREMKATLPK LNDRGFLKLKRARHPLIPLDKVVPIDLELGGSFTTIIVTGPNTGGKTVSLKTVGLLSLMA MSGLFVPAEEGSELCVFDGIFADIGDEQSIEQSLSTFSSHMTNIIGILRDMTPKSLVLLD ELGAGTDPAEGSALAISLLENIHRMGCRMIATTHYSELKAYAFERRGVINASMEFDVQTL SPTYRLLVGVPGRSNAFAIAERLGLPRAIIDKARGQVSDEDQRVETMIASLEENRLTAEA ERHSAEQIRRENEELRAALSAERAKLDEQRDKVLLKAEREAQDAIAKARREAEEIIADLR RLAKEEAGAIKDHKLIAARRRLDEAEPKLRKPGAKRPERSKAEVEPGDEVRVVSLGQKGH VVEIVNSSEVTVQLGIMKMKVNKTDLEVIKASPQKKPVQQVAATVKRTRDDNIRMEVDLR GTNVEEGIMELDRFLDESFLNNFAQVYVIHGKGTGVLRTGIQDYLRRHKHVKSFRIGAYN EGGTGVTVVELK >gi|333603965|gb|AFDH01000116.1| GENE 155 160522 - 160887 502 121 aa, chain + ## HITS:1 COG:no KEGG:PPE_01386 NR:ns ## KEGG: PPE_01386 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 1 108 1 108 119 124 74.0 1e-27 MRFLGHVIRFIVSALVLMVVSWIVPGFSVGGFVSALLLAIVIAVLAWIIESIFGRQITPF GRGIVGFLTSALVIWLSQFIVTGVHASVIGAILAALVVGIVDLFIPVSPFDRKDNRHKST H >gi|333603965|gb|AFDH01000116.1| GENE 156 161056 - 161424 467 122 aa, chain + ## HITS:1 COG:RSp1653 KEGG:ns NR:ns ## COG: RSp1653 COG1622 # Protein_GI_number: 17549872 # Func_class: C Energy production and conversion # Function: Heme/copper-type cytochrome/quinol oxidases, subunit 2 # Organism: Ralstonia solanacearum # 31 121 31 124 125 62 35.0 2e-10 MKKTAALLMALVLVFALAACGKKTDTAATDANATASQEITLQASNWKFDQAEYKVKKGEP LKINLDIKEGVHGVSIPDLKVSLDNNSKSKVVTPEKAGTYNILCSIPCGSGHSTMTAKLV VE >gi|333603965|gb|AFDH01000116.1| GENE 157 161635 - 162210 729 191 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MEQTLAAGSVVTTACIMAAACLGWFYVWIRRKQKAEGAALLQSVITALAVTFFFLLPLLI MFVCVYAALLSAGTFLPDSVWFQQSEDLLSLALLLIFAQTLLSIPVRLLLRMGALKGLGE FRKKIGMPIVPLQLSLTMLTFALGYLAAREWHLTSVELTESGLYYVSILPPLAAFGIFTL LRRRRGNHPGA >gi|333603965|gb|AFDH01000116.1| GENE 158 162426 - 162932 450 168 aa, chain - ## HITS:1 COG:BH3108 KEGG:ns NR:ns ## COG: BH3108 COG1286 # Protein_GI_number: 15615670 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein, required for colicin V production # Organism: Bacillus halodurans # 9 164 16 174 179 92 37.0 3e-19 MLVAGGLVLGYARGLISQLVSIAGLFIALYVAVRFYEPVATYLLQWLSLSSFSGYDKYEF LVKGLNLERYIANALSFALLFFLVKLALGIGGRTLNLIARLPGLHTVNRVTGALLGALEA FVIAAVAVHIMTILPSDYVQDRLGQSRFAPYILNDVMEWARKLWQRSM >gi|333603965|gb|AFDH01000116.1| GENE 159 162974 - 168196 5432 1740 aa, chain - ## HITS:1 COG:NMA0905 KEGG:ns NR:ns ## COG: NMA0905 COG3468 # Protein_GI_number: 15793871 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Type V secretory pathway, adhesin AidA # Organism: Neisseria meningitidis Z2491 # 723 1109 1006 1379 1773 65 29.0 1e-09 MNSEEKTKIIVDIYGNEYKLKAHNSPGYVRKVAAEVNDQMVQIAESYPRLDTYKIAVLAA VNLTDEKAKVEQRFSETENRLNDLQRALSKADAAVESARGQLERAQQEEQLRKAELAEAR EQGAKAAKRQQELTASLEQTKQRAEQNLRELNAAKEKAQQGAKREEQLKAELQQTRQNTE KLQREQASLKQQMEKDARQADQWKKELEQAAGQIKTLESKIGQAERDAESLLEQLEQEKT AAGQAREESAAALLQIQEAAEKEQTLRAELQLVKQRSEQVQRDLQASKERERQQNGQMEQ LRQELAEAAQREAAVRSEADQAKQDAEALLEELELEKAAAEENRLQAAAELERLAREQKH TDEQLRQLKDELELAKLEADESREREERLNADAQQAAEREEMLRSELQQAQRDAEALLEE AELEKAAAESLKEQLREAGEREQTQRTELALMKQRGEHMQRELAESKEQTAQREQNLREA ADQLEEIRDELEKSRKDAEALLEELEANKASAEEELRESTEALKAARLESKAVREAAENE KAAAETRLRNAEEALVTARREAEESLAAARLEAAEKLEALQKESAERLELAQLEAEEQLE ALRREAADLETARNAADAQLEALKRQSAEELELAQMEAEEKLEAARREASAKLTAAENEA ASRLLAAVREAEEIEAARKEAAAKLEEAQREAAAAREAFRQELEAARERAEQELLEAMEA AEQESEARKEAQQSQEAAEAKLREASEALRALDLKASGLEAEKEEAAARLEALERETSER MEALKREGAEELELAQLEAEEQLDAARREAAAELEESRREAAAKLQAAVREAQELESARK EAADKLAEAQREAEAARVAFRQELAAERVKAEQELLEAMEAAERETEARAEVQREKDNAE AKLRETSEALQAAERKAAELEAEKEASLAQLEALKRESADELELAQLEAEERLEAVRREA AAELKAAENAAAEKLLAAERRAEELQAARKETADKLEGVRREAEAAQEALRLELAEERER AELAQLEAEERLEALRKEAAAEREAAENTAAEKLLAAERKAEELESARKETAVQLEAARR EAEAAQEALRRELAEERERAEQDLLEAMEAAERETEARLAVQREKEAAEARIRETEQALA AVRQEAGELAASRSEAAEELAAARRDFAEQLEFAELEAAEKLQEAQREAAEKLASAQREA EAAHQRELAAERERAERELLETAGAAERDRAAREAAEMEKADALAKLRETSEALEAARQE AVQMRESAAKLVETLRAELTGARQDAEALLEDLEQDKSAADEELRKVSEALRAAQEEAAA AANAANAAKAAERDAEARAASVGEEMAVRLKAAEEREEALRGELEQARRDAEALLEDLEQ GQSTADERLREAEKALEEARLEVERAREDRAKLEVSLKEELTETLKQGELMLTQVAAARE KADKELASERGRSAQERLAAAELAAQLEGALKREETLRAELNQARQDAEALLEDLEQGQG AAAAKLQETAAVLEAAREAAVRELAAERDKSAEERQKAEELAEQLHAAVSGRDEAAAREA KLREELSQAKASGEALNAELTAALREVAATQQMAHEQVLQEQSIRRELDSSMQERRSLQE ELDAYRQLMDEQADQERASLGELGGLRGETEQLRQEVARITEELETEAKRSGLLRHQLEE LEQAHLQAEQGLKEMSRLHEQTSGRWDELQEEHRKLQDEYAKLQTEYNEWIQLVMEEPKG >gi|333603965|gb|AFDH01000116.1| GENE 160 168376 - 170826 2622 816 aa, chain - ## HITS:1 COG:BH3110_2 KEGG:ns NR:ns ## COG: BH3110_2 COG0072 # Protein_GI_number: 15615672 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Phenylalanyl-tRNA synthetase beta subunit # Organism: Bacillus halodurans # 155 815 4 656 657 579 49.0 1e-165 MKVSYQWLSEYVDVQGFTAEDLADKLTRSGIEVDIVESLNKGVSGVVVGFVKSKTKHPDA DKLNVCTVDVGTGEDLQIVCGAKNVDAGQKVPVAVIGAVLPGDFKIKRAKLRGVESQGMI CSAKELGMNDKLLPKEIQEGILVLPENTEIGKPVVDVLALSDNILELELTPNRSDCLSMI GTAYEIGAILGRPVKLPEEGRNVNVDFSTVKAEDKISVSIAAPEQCTHYAARLIEGVRVG TSPLWLQNRLMAAGIRPINNIVDVTNYVMLEYGQPLHAFDADQVAGGRIEVRLAAEGEKL VTLDDVERTLEPHMLLVTDGIKPIAVAGVMGGANSEVTESTTSILLESARFAGPSVRKTS RQLGLRSEASLRFEKEVNREAVIPALDRAAALLVLCAGGQVAQGIVQETVQTFSGVKIPL KLERVNTYLGTDLSLQQVKEIFDRLGLEYGLLEEGSLLVHVPGRRGDITRDVELIEEVAR LYGYDNIPTTLMTGVTTPGSLTREQSLRRTIRRLLTGSGLHEVITYTLGQRENAADYPGL YPEYAPIPLAMPMSEDRSALRTSLVPHLLEVVSYNRNRNNDDIAIFETGTVFLSKETALT AQPQEKRLLSIAMTGNWSGAHWGQKARKADFYDLKGVLERVISYLGVTIEFRSAQKEGFH PGRTAELFLLTPDGERRSIGYMGQLHPTLQKKRDLEDTYVLEAELDPLLQQADFEVDYRI LPRYPAVGRDMALVVDTAVPVGDLERLAAETAAELLESIRVFDIYTGERLGEGKKSVALA LVYRHPERTLQDEEVTETHARVVTALESAFGAELRK >gi|333603965|gb|AFDH01000116.1| GENE 161 170851 - 171885 1242 344 aa, chain - ## HITS:1 COG:BH3111 KEGG:ns NR:ns ## COG: BH3111 COG0016 # Protein_GI_number: 15615673 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Phenylalanyl-tRNA synthetase alpha subunit # Organism: Bacillus halodurans # 1 341 1 341 344 501 68.0 1e-141 MRERLEALKVQALQELAAVGSQQELNDLRVKYLGKKGPLTEILRGMGALSAEERPVIGQV ANDVRGAIEEVIAAKQEEYDRQETENRLRAETIDVSLPGRPSVQGAVHPLNKIVEEIEDI FIGMGFTVVEGPEVERDYYNFEALNLPKDHPARDMQDSFYITEELLLRTQTSPVQVRTME GRKGAVPIKIISPGKVYRRDDDDATHSHQFTQIEGLVIDKNIRMSDLKGTLLQFVRELYG PQTQIRLRPSFFPFTEPSAEVDVSCMMCGGEGCRTCKQTGWIEILGSGMVHPKVLEMSGY DPNEYSGFAFGLGAERVAMLKYGVEDIRNFYTNDLRFLKQFVHL >gi|333603965|gb|AFDH01000116.1| GENE 162 172333 - 172647 428 104 aa, chain - ## HITS:1 COG:BS_ykkD KEGG:ns NR:ns ## COG: BS_ykkD COG2076 # Protein_GI_number: 16078375 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane transporters of cations and cationic drugs # Organism: Bacillus subtilis # 1 104 2 105 105 101 55.0 4e-22 MAWAALILAGCSEIFGVLAMNKIARKKTIGAYALLFFGFGISFSLLSYAMESIPMGTAYA VWTGIGTCGGTLLGMFMFGESKDWRRILFIAMIISAAVGLKLLT >gi|333603965|gb|AFDH01000116.1| GENE 163 172647 - 172994 426 115 aa, chain - ## HITS:1 COG:BH0686 KEGG:ns NR:ns ## COG: BH0686 COG2076 # Protein_GI_number: 15613249 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane transporters of cations and cationic drugs # Organism: Bacillus halodurans # 1 111 1 111 114 93 47.0 9e-20 MNRNWFYVLAAGLLEIGWVSGLKHAHDAFTWILTGAAILLSFWVLLMATSRLPVGTVYAV FTGIGTAGTVLTETIVFGEPISWLKIVFILILLGGVIGLKITTKEPEEPAKGANS >gi|333603965|gb|AFDH01000116.1| GENE 164 173038 - 173607 693 189 aa, chain - ## HITS:1 COG:lin2193 KEGG:ns NR:ns ## COG: lin2193 COG1309 # Protein_GI_number: 16801258 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 5 187 4 191 194 115 34.0 4e-26 MNTPERIKAAALDLFASQGYEGTSMANIAEAVGIKTPSIYAHFKGKEELFLSVLQDASRG ELEFASSHLEAGGEALDRKLYKLLSHTRGKYEHNGSTKFWIRMMYFPPASVYRETIELSY AYLSRMEERLTSVFTEDCSAIGVDPDKAAAAFLCLMDGIIVELLYGTAESYDKRLEASWD VYWRGISHS >gi|333603965|gb|AFDH01000116.1| GENE 165 173646 - 173780 66 44 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSHFRFGIKRHFDFAFIFPLNEREYTVTDSGSDTVKYARGRLKR >gi|333603965|gb|AFDH01000116.1| GENE 166 173777 - 174718 989 313 aa, chain + ## HITS:1 COG:SMc01702 KEGG:ns NR:ns ## COG: SMc01702 COG0667 # Protein_GI_number: 15964217 # Func_class: C Energy production and conversion # Function: Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) # Organism: Sinorhizobium meliloti # 1 281 1 287 328 167 37.0 3e-41 MKYRTLGKTGLKVSVIGVGTWQFGGEWGQDFTQDEVDAVLDKAKELGINLIDTAECYGDH LSESFIGNYLSRRGREGWVVATKFGHHYHDRFKRDERFSAEDMIGQLDASLKALGVDYVD LYQFHSGTDSVFDNDALWTALDKQKQAGKILHIGTSIAKNDNLHQVAASTQVGSEAIQVV YNRLDRAPEESVFQSCLQQNLGVLARVPLASGYLSGKYKPGATFAATDTRHRHDPAETQR KLEEVQRIREHEVPEAMDMATWALAWCLKHDAVSAVIPGCKNVAQVESNAKAAAYLSDNH PQAWTEEAEASGA >gi|333603965|gb|AFDH01000116.1| GENE 167 175067 - 176056 959 329 aa, chain - ## HITS:1 COG:DR1093 KEGG:ns NR:ns ## COG: DR1093 COG0180 # Protein_GI_number: 15806113 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Tryptophanyl-tRNA synthetase # Organism: Deinococcus radiodurans # 4 324 25 348 351 318 52.0 7e-87 MERILTGDRVTGKLHLGHYAGSLKKRVELQHQMETFLLLADVQALTTHFEDPDLVRKHLR LVALDYLAAGIDPEKAVLCVQSLIPEIAELTVFYSMFVTVSSLRHNPTTKSEAEQRGYDD LYYGFLGYPVSQAADITFCKATLVPVGDDQIPHIEQTRKIVRRFNSLYQPVFEEPRALVG HTPRLIGLDGNGKMSKSLGNGIELDASAEEIRDKLKKAKTDPSRIRKDDPGHPGICPVFS YHEAFLAEEAPEIRESCERGSIGCTACKEKLAEGLNALLEPMRGRRAYYEAKPAEVDEIL QSGTAKARGIGRETMREVREAMRIDYFGR >gi|333603965|gb|AFDH01000116.1| GENE 168 176434 - 176976 571 180 aa, chain + ## HITS:1 COG:no KEGG:pE33L466_0421 NR:ns ## KEGG: pE33L466_0421 # Name: not_defined # Def: hypothetical protein # Organism: B.cereus_ZK # Pathway: not_defined # 1 180 85 260 260 116 37.0 4e-25 MKTKLGLLAAVSCLALTACGDYKEQASPLKQGGGADRSSAAEAPRFAASLAQEYSKEDTV QIGDAKIKVSKVEKFTEQGPETPNLPDGEFVVVTLNIENSGTKELPYNPYSFEMANSSGM TSDKVLASFSGETGLKYGELAPGGKVSGTLVFEQPKGDPKLQLLHKEDVRPDKAVKINLQ >gi|333603965|gb|AFDH01000116.1| GENE 169 177197 - 179155 2101 652 aa, chain - ## HITS:1 COG:no KEGG:Dred_3168 NR:ns ## KEGG: Dred_3168 # Name: not_defined # Def: hypothetical protein # Organism: D.reducens # Pathway: not_defined # 51 646 13 596 600 457 43.0 1e-127 MSGSFFTGKKGFLLVLVLVLLAGAGGGWYYYSSKWKAAVGGPLPAKQELTKVATADKLQD SYDVIVVGTDPEGVSAAVSASRSGLKTLLIEPRKRTVLGGLMTEGWLNSIDMNWDKTVST LPGKEPAYFNQGIFKEWYEKIEGHSFDVTTAANAFNKLVADEKNIDVSMDGYSVEPVLKQ EGAAQSVTGITVTKQDGTKQTIGTKTVIDATQDADFAAAAGVPFTIGREDIGDKKARMAV TAVFRLKNVTDDVWSKVAKRLNGDNDKDTGLDKMSAWGYGKEMAGYVPLNKQRMKMRGLN IGRQLDGTVLINALHIFDIDGLNAKSQQEGLEIAAKEIPNVVKYLKTFDEFKNVELDSIA PELYVRETRHMEGLYRLSVVDLLENRDQWDRIAFGSYPADIQRTSPNDNGAVVVHPTKYA VPFRSIVPQNVDGLLVVGRSASYDTLAHGSARVIPVGMAEGEAAGAAAKLAAEKGTTFRA MAESKSLIAELQKRLNDQGMDLKPYKLDEATFMKHKAYPGLKAAVSMGIAYGSYANAGFK ELDNPSNAQRMVNQMNSVRRMYAASFQGDPSAAVKGMEEPAKKTLTLQQASYTIALAAGL KVEAAEAQAALENGGLLSKATLGIIANKEKLSDGDVYMMLKDAVEKQAGVKF >gi|333603965|gb|AFDH01000116.1| GENE 170 179242 - 180465 1297 407 aa, chain - ## HITS:1 COG:no KEGG:Moth_2225 NR:ns ## KEGG: Moth_2225 # Name: not_defined # Def: hypothetical protein # Organism: M.thermoacetica # Pathway: not_defined # 7 379 15 383 399 212 36.0 3e-53 MNRKKRVWAALAVIFLLAAYVRIDFLRSVDHEMPHDSLNYDKMVRQLLETGVYAYNGETP NALVTPGYPLFLAAVYEMADYKEHDPLPWVRYIQALLSLAALGFVYRIARRFSGELTALI ALLIAAVYPPFVWANGAILTEVLAIFLLMGYLLAQIRVFETPSYGRAAAAGIWLGLTVLV RPEFLPLIAVAFAFQWLRDKEARKRTIRLFACSAAAVVLLLAPWWIRNAVTLHQWVATAT QENPFRAGTYPYNTFNDESLVDPAGKTEKELAIARLKAGFTTQPGLFIKWYTIGKMQYVY QSVYRGGGHQPYYPVIPFNANLLHRTLVLSGAIAVLAALRRWRETVTLLALAVIAMSLIR LGFVADYRYNVTMMPLIIILDCVLGWRAVMWWKGRRTQKTAVLNPIK >gi|333603965|gb|AFDH01000116.1| GENE 171 180624 - 181736 1192 370 aa, chain - ## HITS:1 COG:CAC0831 KEGG:ns NR:ns ## COG: CAC0831 COG0642 # Protein_GI_number: 15894118 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Clostridium acetobutylicum # 70 359 66 362 366 254 46.0 2e-67 MKNKFIHTVRWQFIFVFILSIVFAAGTVLLAYRVVKSIIGLSYYSGPLRWVVNNIGSTPV MVVVGGGLFLVYFFIFSRKIIGYLEEITQGVQEIAKGNLDYEIVARSTDELGEVAETINV MTRKLKKSIEEERKAERTKNELITGVSHDLRTPLTSILGYLELIETDRYKDEVELRYYTR IAFEKTKNLNKLIDYLFEYTSLPGEGIELEMKKVNIYGFLKQLAEEFVPILTKAGMTCRV TAEDDTLYIRADGRQLVRAYENLISNAIRYGSAGKVVDIKISRSGQEVVVEIVNYGEPIP ESDLPYIFERFYRAEKSRSSRTGGTGLGLAIAKSIIEMHGGVIAARSHRKQTVFETRLPL QPSRQPGTDS >gi|333603965|gb|AFDH01000116.1| GENE 172 181773 - 182465 886 230 aa, chain - ## HITS:1 COG:CAC0564 KEGG:ns NR:ns ## COG: CAC0564 COG0745 # Protein_GI_number: 15893854 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Clostridium acetobutylicum # 1 230 1 230 233 269 58.0 3e-72 MYGGTILLVDDETEITNLLEIYLKNEGYRLLKASDGAEALELLNENEVDLIILDVMMPRM DGIEACMKIREEKHMPIIMLSAKSQEIDKITGLSIGADDYVIKPFSPLEMLARVKSQLRR YRQLNSRPAKNENEILIEDLLINLGTHKVYVEGSEVRLTPREFAILQVLARSRGQVLSME QIYEAVWDEPFFESNNTVMVHIRKIREKIEKDPSRPQMIKTVWGIGYTIE >gi|333603965|gb|AFDH01000116.1| GENE 173 182657 - 183637 1285 326 aa, chain - ## HITS:1 COG:BS_yfiY KEGG:ns NR:ns ## COG: BS_yfiY COG0614 # Protein_GI_number: 16077911 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-hydroxamate transport system, periplasmic component # Organism: Bacillus subtilis # 47 323 36 321 325 310 56.0 3e-84 MKSAARKSYVLCLIVLAMALALAGCGKGNQASDGGAASPAPGDTAKQTIKVKHAMGETEV PAAPKRVVILTNEGTEALLALGIKPVGAVKSFTGNPWYDHIKADMDGVTVVGDEHQPNME AIISLKPDLIIGNKMRQEKVYAQLSAIAPTVFSETLRGEWKNNFSLYAEAVNKKADGEKL IADFDKRIEDFKSKAGDKLKEKVSVVRFMAGKTRIYLDDTFTGIIFKQIGIARTPVKAKD TFVEEITKERVPEVDSDRLFYFTYETGDGNGTKQEEAITKDPLWQNLNVVKNGKAQKVND VTWNTAGGVKAANLLLDDLYKFYDIK >gi|333603965|gb|AFDH01000116.1| GENE 174 183717 - 183908 105 63 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MPRGIAAPSVFLCVIAGVFILPSGLSSGIIQGTFPISERTRQAEEDFYMGKRIVLAEKRE VSG >gi|333603965|gb|AFDH01000116.1| GENE 175 184012 - 184806 961 264 aa, chain + ## HITS:1 COG:no KEGG:BCE_2249 NR:ns ## KEGG: BCE_2249 # Name: not_defined # Def: hypothetical protein # Organism: B.cereus_ATCC10987 # Pathway: not_defined # 4 263 8 266 268 228 50.0 2e-58 MTMLLLACLFTLIIHAAETSAYAFRLAGIRTAKLAVALSLAGMIVLISRTSNMVQGLMIS GIADKAGQTDPHLALAPFRFVLMSASVGTAVAIVLFPTLVSLSARMIAHFEVTGSIPSLL KATANVHGIKQARKHLRPPRLQMLSRLRIGGVPKRLVLLNVVVTAIYTVGVLAALYASAF SPDNKSQATMSSALINGIATIIMTLLIDPKVGLLTDRAMHGKASQEAVNKMFGLLMLSRL AGTILAQVLLVPATSFILWALTLF >gi|333603965|gb|AFDH01000116.1| GENE 176 185110 - 186303 1251 397 aa, chain + ## HITS:1 COG:BH3693 KEGG:ns NR:ns ## COG: BH3693 COG2311 # Protein_GI_number: 15616255 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Bacillus halodurans # 9 391 12 401 405 170 32.0 5e-42 MIGPSAGTERIIALDIIRGFALLGIFLVNMPTFSGSEFAVYHGADRWLRLLFDLFVQGKF YLIFSFLFGLGFYIFMSRAEQKGYGPGLFRRRLLVLLLIGFLHLALFWRGDILTLYAITG FLLPVFYRMKTETVRKWGLLLVLGYLLLILGLPALIIALVAYARGGIDPSLGGPLYTEAE AAASLHAFRTLSWPDWLAWHWRSEVWDSLSSQLSMLPVVLGMFLLGLAAGRSGLLHDVSA HRERWRKIRSRYLALSLPLLAAIAAIYAIGAETDLSLVTFFLVYTSGFTLAFVYIAGLAL LLENPVWQRRLRFLQPYGRMALTNYLSQTVLCVVLFLGFRLYGQVSLWQGTLLCLVVYPL QIAFSAFWLKRFRYGPAEWLWRKWTYGRLSPGRGQSR >gi|333603965|gb|AFDH01000116.1| GENE 177 186557 - 188209 1704 550 aa, chain - ## HITS:1 COG:BS_ycnJ_1 KEGG:ns NR:ns ## COG: BS_ycnJ_1 COG2372 # Protein_GI_number: 16077463 # Func_class: R General function prediction only # Function: Uncharacterized protein, homolog of Cu resistance protein CopC # Organism: Bacillus subtilis # 30 133 18 123 124 87 37.0 5e-17 MKGKVVKTARRALFTAGLLCLLVILGGLFPREAFAHAILTGTDPAPNSTLAQAPEQIQLT FNEPLEEGVYYIRVLDQSGAKVTDNAATMTKDRTGIVLQLPKLDDGLYVVSYHVISGDGH PVGGSYPLTVGNAAPAAQNGNTGGTTAGHNHNLGSSGVDGLIQYAARGLWYAAMLALTGW LLWRRSEFGRKLPQEVSAKWTLNLQRFYLVALLFVILTHVEALLGDGGLSQLGSLLTGTG IGISWLAALGLSLSGFVLLGRAAWLDYAWAAALLAVKALSGHAVTFPPVSASVAADFIHL GAAAVWVGGLTAAAAVYRNRREEFTSFLGRFSGAALGSIIALTVSGVVLTLLFLPSLDMI IYTQWGILMLVKVGVVVLVVGTAAFLRYTMKNKRDKATAKLYKVDFSFMLIILAVVGVLT YLSPAPPNEPLNWHEMGKSVHMTAEVSPKAPGTNTFKVTVWVLDTMGPPKHVQMNAQYEP KEEEEATLAPIQIPLELQENQEENWLEGYNMYTYYTQGPYLPLPGKCTLEVRIMDSNDDE AVYKKEFRLY >gi|333603965|gb|AFDH01000116.1| GENE 178 188260 - 188667 399 135 aa, chain - ## HITS:1 COG:SSO2148 KEGG:ns NR:ns ## COG: SSO2148 COG4911 # Protein_GI_number: 15898930 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Sulfolobus solfataricus # 5 134 11 119 127 69 32.0 2e-12 MAKRYFTVEEANGLLPAVQDQISGLKEIKKKFEDKYAELREKRQAVRRLGGKEAYDPLFE LECDLEFLQIEARGMIQHFYHQGIELKDIDSGLVDFPSILGGEEVLLCWRSGEERIGYYH SRQDGYTGRKPLPGD >gi|333603965|gb|AFDH01000116.1| GENE 179 188899 - 189774 914 291 aa, chain + ## HITS:1 COG:VNG6408G KEGG:ns NR:ns ## COG: VNG6408G COG0384 # Protein_GI_number: 16120293 # Func_class: R General function prediction only # Function: Predicted epimerase, PhzC/PhzF homolog # Organism: Halobacterium sp. NRC-1 # 3 291 1 294 299 241 44.0 1e-63 MSLSKQDFYIVDVFAEKKYAGNPLAVVICPEPLPNPDMQSIAREMNYSETTFLQPEPDAD GSYRVRIFTPNSELPFAGHPCLGTAWIIRHLYSPDAQEITLKVPAGNIPVTFGSDGVLWM EQLQPSFGSPISASAAAAVIGLETEEIDERYPAQVVSTGIPFLLIPVKTLASVRSAVYRS EAAAALPAEAAVPVMPFCPETYDTANGINARVFVDELGVPEDPATGSANGCLAAYLARYR YFGGPSVETAVEQGYEIGRPSLLYLRASEMNGRFAIHVGGRVFFTAQGQLV >gi|333603965|gb|AFDH01000116.1| GENE 180 189902 - 191635 1670 577 aa, chain - ## HITS:1 COG:PA4843 KEGG:ns NR:ns ## COG: PA4843 COG3706 # Protein_GI_number: 15600036 # Func_class: T Signal transduction mechanisms # Function: Response regulator containing a CheY-like receiver domain and a GGDEF domain # Organism: Pseudomonas aeruginosa # 152 438 251 536 542 147 34.0 4e-35 MNQPSSRGHGADAEGRDERLLKQGRRLFIKELAHQVAQMDDLLVIIASSPEVKDLQDMYR IVHMLKGSAPMFQFGRIGKIAEELVRVWEWTQSLHPSAALTADFTPLVNESVTHTSEYIR HLLMEHDVSVIELEVDEQKENGIVHTMGGKRRLLIIDDDDVLRTYLVRRLELDGYKVDEA SDVPSAKLLLRQQAYDLITLDLMMYPQSGYELFDFLKEDPTLKWVPLIVLSGRDDLSDKV RCFHLGADDYVTKPFQYEELAARIYGIVKRTKNFEELAFRDPLTAVFNRRYFDHQIQLEL ERVQRYPSAISLAFIDIDNFKRINDRHGHHTGDLVLQGLAHLLQTRMRSTDLVFRFGGEE FVVVMPGTGAEAAAESLRALLEVAHLQPIVSDEGEDYWITFSAGVSAWHPDLSIDEWILR ADQAMYRAKQDGKDRIYIEEETEAAPAGSEGSLRHRPKLLVVDDDKILRAIVVSGLQHLP LDIEEAADGEAAYERIREGGIDLCILDGIMPKMSGIELLERLNTEPPVTGTMCKVIMLSG RKKEESMDTLQKLGVHEYMTKPFSMVELEMNVKRLLD >gi|333603965|gb|AFDH01000116.1| GENE 181 191674 - 192051 399 125 aa, chain - ## HITS:1 COG:BS_resD KEGG:ns NR:ns ## COG: BS_resD COG0745 # Protein_GI_number: 16079369 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Bacillus subtilis # 2 122 5 121 240 97 44.0 4e-21 MNPYRILLADDEAALRFLLTETLSDEGYAITEVMDGKEAVAELVRERYDLVILDYMMPEK TGVEVCEWLRSEGGINREVPVILLTAKALDKDREKATAAGVSTYIVKPFSPLQLVDTVEA LIGGA >gi|333603965|gb|AFDH01000116.1| GENE 182 192251 - 192547 303 98 aa, chain - ## HITS:1 COG:no KEGG:Cbei_4075 NR:ns ## KEGG: Cbei_4075 # Name: not_defined # Def: hypothetical protein # Organism: C.beijerinckii # Pathway: not_defined # 1 95 1 94 103 95 55.0 5e-19 MSYKNGKDILPASLLKELQNYIQGEIIYVPKKEKKRAGWGENNGTRLIIERRNREIFRLY QNGSTVLELIQTFHLSEDSIRKIIGKTRERLKEAAATP Prediction of potential genes in microbial genomes Time: Sun Jul 17 10:34:30 2011 Seq name: gi|333603915|gb|AFDH01000117.1| Paenibacillus sp. HGF7 contig00029, whole genome shotgun sequence Length of sequence - 45673 bp Number of predicted genes - 46, with homology - 41 Number of transcription units - 32, operones - 9 average op.length - 2.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 1165 1189 ## COG0513 Superfamily II DNA and RNA helicases - Prom 1197 - 1256 5.1 - Term 1238 - 1286 5.1 2 2 Tu 1 . - CDS 1318 - 1899 686 ## COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog - Prom 1957 - 2016 5.1 3 3 Tu 1 . - CDS 2123 - 3040 1011 ## COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases - Prom 3264 - 3323 5.8 + Prom 3092 - 3151 5.5 4 4 Op 1 . + CDS 3181 - 3438 317 ## BMD_4995 hypothetical protein 5 4 Op 2 . + CDS 3496 - 3744 309 ## Bcell_2680 hypothetical protein + Term 3816 - 3851 1.1 - Term 3804 - 3839 1.1 6 5 Tu 1 . - CDS 3852 - 4628 214 ## PROTEIN SUPPORTED gi|163797523|ref|ZP_02191474.1| 50S ribosomal protein L9 - Prom 4661 - 4720 3.5 - Term 4893 - 4928 5.1 7 6 Tu 1 . - CDS 4962 - 5417 524 ## COG1406 Predicted inhibitor of MCP methylation, homolog of CheC - Prom 5534 - 5593 3.1 + Prom 5566 - 5625 3.9 8 7 Tu 1 . + CDS 5823 - 6602 816 ## COG0647 Predicted sugar phosphatases of the HAD superfamily + Term 6645 - 6699 0.7 + Prom 6732 - 6791 5.8 9 8 Op 1 . + CDS 6851 - 7753 882 ## COG0583 Transcriptional regulator 10 8 Op 2 . + CDS 7765 - 8571 909 ## COG1387 Histidinol phosphatase and related hydrolases of the PHP family + Term 8600 - 8641 7.7 - Term 8174 - 8208 -0.5 11 9 Tu 1 . - CDS 8446 - 8679 84 ## + Prom 9060 - 9119 6.1 12 10 Tu 1 . + CDS 9190 - 10170 999 ## COG1230 Co/Zn/Cd efflux system component + Term 10189 - 10229 10.5 + Prom 10216 - 10275 3.8 13 11 Tu 1 . + CDS 10314 - 11312 1083 ## COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases - Term 11367 - 11410 -1.0 14 12 Tu 1 . - CDS 11635 - 14010 1778 ## Pjdr2_3195 hyaluronate lyase (EC:4.2.2.1) - Term 14030 - 14072 4.2 15 13 Op 1 . - CDS 14092 - 14970 861 ## COG1737 Transcriptional regulators 16 13 Op 2 . - CDS 15048 - 16481 1065 ## COG3119 Arylsulfatase A and related enzymes 17 13 Op 3 38/0.000 - CDS 16525 - 17364 760 ## COG0395 ABC-type sugar transport system, permease component 18 13 Op 4 35/0.000 - CDS 17361 - 18278 911 ## COG1175 ABC-type sugar transport systems, permease components 19 13 Op 5 . - CDS 18262 - 19521 1370 ## COG1653 ABC-type sugar transport system, periplasmic component - Prom 19695 - 19754 8.0 - Term 19721 - 19762 10.2 20 14 Tu 1 . - CDS 19805 - 20689 986 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily - Prom 20759 - 20818 3.7 - Term 20766 - 20811 10.2 21 15 Op 1 36/0.000 - CDS 20844 - 21614 689 ## COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit 22 15 Op 2 8/0.000 - CDS 21617 - 23389 1803 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit 23 15 Op 3 . - CDS 23382 - 24059 645 ## COG2009 Succinate dehydrogenase/fumarate reductase, cytochrome b subunit - Prom 24242 - 24301 4.2 + Prom 24253 - 24312 8.4 24 16 Tu 1 . + CDS 24352 - 25251 876 ## COG0583 Transcriptional regulator + Term 25415 - 25460 5.1 + Prom 25424 - 25483 2.8 25 17 Tu 1 . + CDS 25603 - 25824 140 ## + Term 25826 - 25853 -0.9 - Term 25885 - 25919 3.0 26 18 Op 1 . - CDS 25958 - 27235 1575 ## COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain 27 18 Op 2 17/0.000 - CDS 27260 - 27922 890 ## COG0569 K+ transport systems, NAD-binding component 28 18 Op 3 . - CDS 27937 - 29280 1207 ## COG0168 Trk-type K+ transport systems, membrane components - Prom 29503 - 29562 3.9 29 19 Tu 1 . + CDS 29667 - 31325 1777 ## PPE_03874 hypothetical protein + Term 31359 - 31401 1.5 30 20 Op 1 4/0.000 - CDS 31537 - 33594 2224 ## COG0322 Nuclease subunit of the excinuclease complex - Prom 33660 - 33719 1.6 - Term 33640 - 33701 11.6 31 20 Op 2 . - CDS 33721 - 34035 342 ## COG0526 Thiol-disulfide isomerase and thioredoxins - Prom 34100 - 34159 9.4 + Prom 34188 - 34247 5.7 32 21 Op 1 . + CDS 34295 - 34441 218 ## + Term 34454 - 34502 13.4 33 21 Op 2 . + CDS 34635 - 35642 1165 ## COG0840 Methyl-accepting chemotaxis protein + Term 35723 - 35764 9.1 - Term 35705 - 35758 19.0 34 22 Op 1 8/0.000 - CDS 35784 - 36734 1266 ## COG1484 DNA replication protein 35 22 Op 2 . - CDS 36768 - 38276 1798 ## COG3611 Replication initiation/membrane attachment protein - Prom 38312 - 38371 5.6 36 23 Tu 1 . + CDS 38542 - 38766 339 ## COG1983 Putative stress-responsive transcriptional regulator + Term 38804 - 38856 12.1 - Term 38799 - 38833 7.0 37 24 Tu 1 . - CDS 38860 - 39123 462 ## Pjdr2_4831 hypothetical protein - Prom 39151 - 39210 4.4 + Prom 39208 - 39267 3.0 38 25 Tu 1 . + CDS 39317 - 40063 976 ## COG3253 Uncharacterized conserved protein + Term 40086 - 40132 14.2 39 26 Tu 1 . - CDS 40444 - 40722 355 ## Pjdr2_4833 hypothetical protein 40 27 Tu 1 . - CDS 40843 - 42009 1206 ## COG1252 NADH dehydrogenase, FAD-containing subunit - Prom 42185 - 42244 4.2 + Prom 42339 - 42398 5.6 41 28 Tu 1 . + CDS 42434 - 43438 1086 ## COG0492 Thioredoxin reductase 42 29 Tu 1 . + CDS 43540 - 43794 253 ## BBR47_47580 hypothetical protein 43 30 Tu 1 . - CDS 43835 - 43990 183 ## - Prom 44161 - 44220 2.8 44 31 Op 1 . + CDS 44433 - 44594 282 ## 45 31 Op 2 . + CDS 44661 - 45113 431 ## COG1970 Large-conductance mechanosensitive channel + Term 45252 - 45297 3.2 - Term 45236 - 45287 6.2 46 32 Tu 1 . - CDS 45299 - 45664 449 ## COG0316 Uncharacterized conserved protein Predicted protein(s) >gi|333603915|gb|AFDH01000117.1| GENE 1 1 - 1165 1189 388 aa, chain - ## HITS:1 COG:BH3348 KEGG:ns NR:ns ## COG: BH3348 COG0513 # Protein_GI_number: 15615910 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Bacillus halodurans # 3 375 2 374 389 266 39.0 4e-71 MYDNFEQLQIAPVWAEKLKERGIGRPTAVQAEAIPLILTGRDAIVQSQTGTGKTLAFLLP ALQRIDVNAKHVQAAIIVPTRELGMQILRVAEDLIGDGPIKCQALIGGAALARQVEKLKK GSPHLIIGTPGRINELIKARKLNVHHVSTLIVDEVDHVLELGSMKEVYSIFKALQRSSQS LFFSATIPAEIGQAAENLMNDPAEIRINPDQRTASTLEHLAFNCEARNKIDTLRRIIRLY EPPKAMVFVNATADVSEVVSKLQHLGLSVEALYGEAGKQQRANVMQSFREGKFQLLLATD VAARGLDIEEVTHVINLDMPLNAEYYLHRAGRTGRMGRSGTVISIVAPKERFIIDKFRKA LRISIDEKEMYEGRVVDAGQGPRSGFRG >gi|333603915|gb|AFDH01000117.1| GENE 2 1318 - 1899 686 193 aa, chain - ## HITS:1 COG:RSc1055 KEGG:ns NR:ns ## COG: RSc1055 COG1595 # Protein_GI_number: 17545774 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog # Organism: Ralstonia solanacearum # 17 185 18 187 199 70 29.0 2e-12 MSKYMIHLFTSNYFHLDKSLQEKIYKEFHVMVYPTIYFILQDHNLVEDIIQESFLRAIDK APQLKETEKYEGWLKKLTRNVTLNYLQKHKRNRNELDSEITLTLRETAPAYEAGSTPLEK EVELKIMQEAINHYVNQLSPAYRQILAMKVVHNMSYKEMAEEMNVTEGVIRQRLYRAREA IRQMLLEEWDFLR >gi|333603915|gb|AFDH01000117.1| GENE 3 2123 - 3040 1011 305 aa, chain - ## HITS:1 COG:BH3306 KEGG:ns NR:ns ## COG: BH3306 COG1506 # Protein_GI_number: 15615868 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidyl aminopeptidases/acylaminoacyl-peptidases # Organism: Bacillus halodurans # 37 294 3 260 265 209 43.0 5e-54 MSESIQSGKKISTLSPVTLSPAVRAAGNETGSLKDGQLLERELLSRHARNVSLYVVTYAA QGLRVKGYLAVPDHAEPLPAVVYCRGGIRGVGMVRIRRIVSMARRGYVVFAPFYRGNEGG EGREDFAGEDRYDVYHGLLMLRDLPEVASVPVSLIGFSRGALMALLAARDCEEVGPVVVW GGVSDLHDTYEERVDLRRMLKRVVGHPLKQADEYIRRSPARWADLIESPVLIVHGTADPQ VKISHAYKLAAALEHAGKDHTMLIYEGLEHRFPKEMDEVALDEVFRWMEQKRNEIEGKKS KKEGK >gi|333603915|gb|AFDH01000117.1| GENE 4 3181 - 3438 317 85 aa, chain + ## HITS:1 COG:no KEGG:BMD_4995 NR:ns ## KEGG: BMD_4995 # Name: not_defined # Def: hypothetical protein # Organism: B.megaterium_DSM319 # Pathway: not_defined # 1 85 1 85 85 79 45.0 5e-14 MSQEFENEFNALVSKAAELLTGDGSSEMTEKIKIWAVYQHLHKAMPALTNHWNGSHPDAK TQVRAIFEEIRDLNEQQKASRAKPE >gi|333603915|gb|AFDH01000117.1| GENE 5 3496 - 3744 309 82 aa, chain + ## HITS:1 COG:no KEGG:Bcell_2680 NR:ns ## KEGG: Bcell_2680 # Name: not_defined # Def: hypothetical protein # Organism: B.cellulosilyticus # Pathway: not_defined # 1 80 1 83 83 71 56.0 1e-11 MSKIAVEDSLSSVKQALQSSGYEVTSLNQADGASCVVISGLDQNVMGFADATTSASVINA HGLTDEEIVQEVGRTTGQNQGF >gi|333603915|gb|AFDH01000117.1| GENE 6 3852 - 4628 214 258 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163797523|ref|ZP_02191474.1| 50S ribosomal protein L9 [alpha proteobacterium BAL199] # 8 257 7 254 259 87 28 2e-16 MNIEGKVVVVTGASSGIGEQTARVLAQRGAVPVLMARSRDKLERLAAEIGGGCGVYRLDV QNTAEVNRVFAEVLAEYGRIDVLVNNAGFGVFERFLDAPLEQFEEMMDVNYMGIVRCTKA VLPAMVKSGSGHIVNIASMAGKIGSAKSSGYSATKHAVLGLTNSLRQELAGTGVRLSAVN PGPIDTPFFERADPTGNYVKNISWFMLKPERVAGAIIRAVEKEKAEIDLPFIAGIGTKLY SLFPRLLDKSAQRMLNKK >gi|333603915|gb|AFDH01000117.1| GENE 7 4962 - 5417 524 151 aa, chain - ## HITS:1 COG:TM1618 KEGG:ns NR:ns ## COG: TM1618 COG1406 # Protein_GI_number: 15644366 # Func_class: N Cell motility # Function: Predicted inhibitor of MCP methylation, homolog of CheC # Organism: Thermotoga maritima # 1 121 1 121 155 86 42.0 2e-17 MKAEYINPFLESARIVIEQVANVRPTTGKLSVKDIYFIERYVWIQIGMTGQMQGNIRFGF EESTALRMVSAMMGGFILTELDEMGHSAISELGNMISGNASTILYNQGIKVDITPPKVVT GDVHEVDALKALTVPLLMDGIGELDIQVLLA >gi|333603915|gb|AFDH01000117.1| GENE 8 5823 - 6602 816 259 aa, chain + ## HITS:1 COG:lin2500 KEGG:ns NR:ns ## COG: lin2500 COG0647 # Protein_GI_number: 16801562 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted sugar phosphatases of the HAD superfamily # Organism: Listeria innocua # 3 229 6 232 255 216 46.0 4e-56 MHGFLIDLDGTLYKGNEAIPGAKEFVELLNKNGLPYLLVTNNSSRSPEHVAGHLNGMGID VGPDRVYTTAMASVQYLLEHGSGNRVYCIGEEGLQSALLEAGFELTDKEPDYVVQGIDRQ LTYDKLASAVKHLLGGARYILTNPDHLLPSDSGLIPGAGSIGALIRTASGANPVVIGKPS PVIMNYALARLELQAKDTWVIGDNTATDIGGGISAGCRTALVLTGLATEANVREHISKSG NEPDLICRDLPHFWNSLMK >gi|333603915|gb|AFDH01000117.1| GENE 9 6851 - 7753 882 300 aa, chain + ## HITS:1 COG:all3953 KEGG:ns NR:ns ## COG: all3953 COG0583 # Protein_GI_number: 17231445 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Nostoc sp. PCC 7120 # 3 288 8 300 337 136 30.0 4e-32 MNLNQLETLITISKTMSFRKAGELLNLTQPAVSAQIRSLEEEFGTILIDRNQPVTLTDSG KLFLEHAERILRTVEDLKQRLADLSQTPQGHIHIGTTTSIAMQILPRVLFYFQDQFPLIK TTIHSMTSSQIMASVDNGSVDIGISYLYEKYPSLEASVLYYDTFELIVSTSHPLSRYSHI SIEKLRNLPFIMLSPETAGRRFVDQVFKTYDINPQIVMELSSSEEVKRMVELNLGAAIIS KLSVVNDLDHGTLKMLKVDELDITHPVGVVYKSGRYLNSAMHQFLQDLKGMPETQFLGSE >gi|333603915|gb|AFDH01000117.1| GENE 10 7765 - 8571 909 268 aa, chain + ## HITS:1 COG:DR0470 KEGG:ns NR:ns ## COG: DR0470 COG1387 # Protein_GI_number: 15805497 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Histidinol phosphatase and related hydrolases of the PHP family # Organism: Deinococcus radiodurans # 4 261 6 257 260 133 32.0 4e-31 MKFDLHTHNERCGHATGTIRHYVDAAVEAGLSVIGISDHSPYFYSEQDQLFPGIAMAKSA FAAYVEEVLGLKKEYAGKIEVLLGVESDFFPEHLDLYRSMYEKFPFDYIIGSVHLSGGVS IFNKNRWKGLDDAQHILHKETYYDLIQQSARAGLFQILGHIDAMKGFYPAFSDIPTPKVD ETLKVIADEDVAIEINTSGKTKTVGGWYPSDLILERALHYGVKVTFGSDSHVPQRVGDDF ELVSKRLKEIGFKEWCFFRNKERVLVTL >gi|333603915|gb|AFDH01000117.1| GENE 11 8446 - 8679 84 77 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGRLPADHPESQLPELKKTGRLTAGFSMSFYEMRRVLQGNENPLFIAEETPFFKPDFFQP LAYEFEVVANTLGNMRV >gi|333603915|gb|AFDH01000117.1| GENE 12 9190 - 10170 999 326 aa, chain + ## HITS:1 COG:SA0163 KEGG:ns NR:ns ## COG: SA0163 COG1230 # Protein_GI_number: 15925872 # Func_class: P Inorganic ion transport and metabolism # Function: Co/Zn/Cd efflux system component # Organism: Staphylococcus aureus N315 # 4 299 15 312 319 317 57.0 2e-86 MTDFHHLDHVKEQSTSKRTLWITLLLTLFFTIVEVVGGIMSNSLALLSDSAHMISDVIAL GLSMTAIYLASRKPNSRYTFGFLRFEIIASFLNGLALAVIAIGILIEGIKRFYEPQDIDF KLMLIISSIGFVVNLVLTLVLHRSMEEEENLNVQSALWHFIGDLLSSVGVIISAVIIYFT GMLWFDPLISIVISCIIFIGGSRIIKESFLILMESVPAKFNLEEIRRDIGNVEGVEDVHE MHLWAISTDHYSLTAHVFIDDKIQPFCIILAINETLKEKYGITHSTIQMEHAGIHPHGEY GREFLKHREEKHQEDSPAPVQKQAMT >gi|333603915|gb|AFDH01000117.1| GENE 13 10314 - 11312 1083 332 aa, chain + ## HITS:1 COG:alr2948 KEGG:ns NR:ns ## COG: alr2948 COG0604 # Protein_GI_number: 17230440 # Func_class: C Energy production and conversion; R General function prediction only # Function: NADPH:quinone reductase and related Zn-dependent oxidoreductases # Organism: Nostoc sp. PCC 7120 # 1 328 1 330 335 223 41.0 3e-58 MKAVLLETFGAPESFSIGEIPTPAVRPGHVLIRVAASGVNPIDARIRQGLMPNLAPPAPA VLHGDVAGTVEAVGEGVTKFRPGDEVYGFAGGFKGFGGALAEYMLADAELIARKPASLSM SEAAALPVVALTAWQGLFDRARLQPGQQVLVHAAAGGVGHIAIQLAKWGGADVFATASSD AKLDIASRLGADGVINYRTEPVEDYVRRCSDGGQGFGVVFDTVGKDNLDRSFAAARTGGH VVAIAARSTHDLSPLHAKGLTLHVVFTVLPLLTDVGRKHQGETLERLARLADEGHLRPLL DEQRFTFRDAAGAHRRLESGSAIGKVVLTNDL >gi|333603915|gb|AFDH01000117.1| GENE 14 11635 - 14010 1778 791 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_3195 NR:ns ## KEGG: Pjdr2_3195 # Name: not_defined # Def: hyaluronate lyase (EC:4.2.2.1) # Organism: Paenibacillus # Pathway: not_defined # 32 790 69 818 1401 636 44.0 0 MIHRLCAAKIGMVLLLVLLSGAAGFQPAQASDEFDSLRIKWKNLLTGGNYPAGDPDIAAQ VAVSAETAGGYWASLDKSAGRTFLWPDLADWSASKTMTASYNRLKSLAGAYSTPGSSLYG SAELGSDIVDGLDWMYSRIYNENKSQSDNWWDWQIGTPQALNDAAVLVYDLLGSVRLANY IAAVDKFVPDPTKRVNSTLTETGANRSDKAQVVTIRGILGKTGGKLAQGRDALSQIFLHV TDGDGFYRDGSFIQHTNIAYTASYGRVLLAGMSRLLYVLSGSSWQVTDANLGNVYNWVQD SFLPVIYKGAAMDMVRGRAISRQHQQDHEMGRDIVASVNRLSLSAPAAKQAELKSLVKAW VQQDTSFGSYYAGLPADDIIRLKSVLNDSAVSPAPAGQLTKIFPKMDRAVQRGPAFAFGI SMSSSRIARYESGGTENLRGWHTGDGMTYLYNGDLTQFSNDYWPTVNPYRLPGTTVDSGA LTDNQGNISTSAYNFVGGASSGNAAAVGMRFSGIGTDLTGRKSWFLLGDKVAALGTGISS ASGRKIETIVENRKLDSGGTNGFTVNGGAKPGQTGWSESMAGVRWAHLAGSTVNSDIGYY FPQLPSIDGLRETRTGSWRNINKDGPTTPVTNSFLSLAFNHGINPSNASYAYVLLPGRTA SQTLSYAENPDLVVLENSNDAQAVQDLSSHVIAANFWNNITKSVAVNGTDLLTSGKQALV VYTETSAEIEIAAADPTQTNTGSIPLQINRSASAVLAADAGVTVTQLSPVIKLNVNVNKA NGTTFKIRLQK >gi|333603915|gb|AFDH01000117.1| GENE 15 14092 - 14970 861 292 aa, chain - ## HITS:1 COG:CAC0191 KEGG:ns NR:ns ## COG: CAC0191 COG1737 # Protein_GI_number: 15893484 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Clostridium acetobutylicum # 4 279 3 278 283 179 35.0 8e-45 MIKGILTVIDETFDSLTAMEQRVARFILDHPQDMVHISVQKLAGLTQTSEATIVRLSRKF RCKGFKELKLRIAADLFVPARENAEFQQVNVGSPTGELMESVAHNSVKSIQDTLAILSAE VMDEAIEVLSRARKIALFGIGASAVVAEDFKHKTARINRWCEAGYSGDMQAIIAANLTAD DAALCISYTGENAEVLHAMRIAKRNGATVISLTQLGLNPIAEHSDIQLFTSTLEQNFRQG AMSSRIAQLYVIDLLYVGLVSRDYESSLASIEKTKRAVQSLHPGRESDSQNN >gi|333603915|gb|AFDH01000117.1| GENE 16 15048 - 16481 1065 477 aa, chain - ## HITS:1 COG:SMc00127 KEGG:ns NR:ns ## COG: SMc00127 COG3119 # Protein_GI_number: 15964702 # Func_class: P Inorganic ion transport and metabolism # Function: Arylsulfatase A and related enzymes # Organism: Sinorhizobium meliloti # 18 424 29 429 512 162 31.0 1e-39 MTDQQRWDTLGCYGNSVIETPNLDWLASEGTIFTNAYTPSPSCVPARASLLTGMDPWNTG VLGMGGGQGPMGGGFAHTLPGELSRAGYHTQGVGKMHFHPQRLLNGFHNTVLDESGRVES PGFVSDYKAWFDANKTGDYGITDHGIDWNSWMARPYHAPEFLHPTNWTVNRSIEFLEKRD PSRPFFLMTSFARPHSPYDAPSFYFDLYRGKKLPEPFMGDWAGRHNVPEDAAKPDAWRGV RSPEEIHRARAGYYGSIHHIDHQIGRLLFHLRKTGLLDETLIVFTSDHGDMLGDHHLWRK TYAYEGSSHIPLLLKLPGGGQETRLKKVEAPVVLQDLMPTLLEAAGAGIPDTVDGVSLLG LIRGEQAQRRFVHGEHSTCYAEEQEMQYVTDGEMKYIWFPRLNEEQLFDLRGDREETRDV SGCPEYREDLDMWRQRLIAVLESRNAGLTENGKLAPQAGRPYLVSPHYEKRMSLFRT >gi|333603915|gb|AFDH01000117.1| GENE 17 16525 - 17364 760 279 aa, chain - ## HITS:1 COG:lin0219 KEGG:ns NR:ns ## COG: lin0219 COG0395 # Protein_GI_number: 16799296 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Listeria innocua # 14 278 17 281 282 242 49.0 7e-64 MSRLEKRRVPFAKMVLHAVLIAGAAIMLLPFLWMLDTSLKTFAESMQAPPVLIPEKLRFD NYLEVFRETRFSRYYLNTLMVTAVKTAGQLLFCSLAAYAFATMSFPGKRVLFLLILSNMM IPQQIILIPAFVVMKQLGWLDTYYALIVPGLASAFGIFLLRQFFMSIPKEIGEAARIDGS SFFRIYRSIYLPLSKPGLAALAIFVIMASWNDFIWPLLFTSSDEMRVLSLAVSSFVGEFS TEYPLMMAAACMAVLPLLLLFLFFQKYFVQGIALTGIKS >gi|333603915|gb|AFDH01000117.1| GENE 18 17361 - 18278 911 305 aa, chain - ## HITS:1 COG:lin0218 KEGG:ns NR:ns ## COG: lin0218 COG1175 # Protein_GI_number: 16799295 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Listeria innocua # 22 304 12 292 292 219 44.0 5e-57 MNKTNRRSRAGGWAHYRIEAAWAYLFIAPAFLCLAIFHLFPAAASLVLSFTKWNGLTAPV FNGLLNYAALLKDKEFIQSILHTATFSIVTVPVSVVLATALAVLLNRKMKGVSLYRVIYF LPVVTMSTAVGMIWKWLYNAEFGPINYILGWLHLPQPNWISDPAYTMLSIMIVSVWSTVG YNMVILLAGLQGISGSYYEAARMDGASARYLFFGITLPLLSPSLFFVLMISVIHALQVFD LVFVMTGGNAALLEATRTVVYNMYDQGFVLFRMGYASAQAVVLFVLIFAMTLVQMALQRK WVHYQ >gi|333603915|gb|AFDH01000117.1| GENE 19 18262 - 19521 1370 419 aa, chain - ## HITS:1 COG:BH1864 KEGG:ns NR:ns ## COG: BH1864 COG1653 # Protein_GI_number: 15614427 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Bacillus halodurans # 1 413 12 437 461 136 27.0 8e-32 MTALTAVIAAGCSQEAESKVQSGKAGASSQAPITLNLAVWDEKLKDTLNQTIEIYKKTHS NVNVQITITPNKDYWTKMQTSLVGGAGPDILMMNGPNFYKFAALGLLTDLQPYIEKDKLD TAVFPEGITELYKYNKHSYGIPYYLGSLGLFYNKELFDQAKIPYPDETWDWEKLKANAAK LTDKEKKTYGYIAVNADQVGYYPLIYQAGGSVVSEDRTKSGLDLPETRKALEFMKSLMDE GISPSAQQQLDTEALQIFGSGKAAMYPGGSFDAYNLNRMLGGKLGVAPLPKGAKQGFYVH GSSWVINNKTKHPQETWDLLKVLAGKEGSGLLAKNGINFPAYTENVDLWAKSIPALDMNA FVSSLNHTAPYPVSKNTAEWQKALTEEVTGAFLGKKSVQEALQAAAQKMNGILANEQNQ >gi|333603915|gb|AFDH01000117.1| GENE 20 19805 - 20689 986 294 aa, chain - ## HITS:1 COG:BH1937 KEGG:ns NR:ns ## COG: BH1937 COG0697 # Protein_GI_number: 15614500 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Bacillus halodurans # 3 287 4 290 298 192 43.0 9e-49 MWKAIILVFLGACSYGMLSTFVKFAYDAGFKPGEVVGAQNLFGTLISLVLVLTLSRHKMK PGQWVPLLMVGLTTGSTGILYYNSLQTVPASIAIVLLFQFTWIGVILEAVLERKRPSRSK AVSLVLLLIGTGLASGVANLGSIDLPVVGVVLGLLSAVTYTGFIYFSGKVSTGVPAINRT LMMNMGGLLLVFVYHTPNFIWNGALGEGLWKYALLVGVFGIVIPTVCFNYGMPKLGTGLG SILGAAELPVAVVLSAAVLKESVSLVQWAGVLLILFGIAYPHLRRGKAGELKPT >gi|333603915|gb|AFDH01000117.1| GENE 21 20844 - 21614 689 256 aa, chain - ## HITS:1 COG:BH3091 KEGG:ns NR:ns ## COG: BH3091 COG0479 # Protein_GI_number: 15615653 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit # Organism: Bacillus halodurans # 13 255 6 248 251 399 76.0 1e-111 MAEAQTAVPSKTVKFIVTRQDSPESAPYKEEFEIPYRPNMNVISALMEVQRNPKKSDGGE TTPVCWESNCLEEVCGACSMIINGKARQACAALIDKLEQPIRVEPMRTFPVVRDLVIDRT RMFNALKKVKAWIPIDGTYDLGPGPRMAESKRQWAYELSKCMTCGVCLEVCPNVNEKTSF IGPAAVSQVRLFNSHPTGEMNKDERLDTLMEDGGIEGCGNSQNCVRSCPKGIPLTTSIAE MNKDTTKRLFKKWLGM >gi|333603915|gb|AFDH01000117.1| GENE 22 21617 - 23389 1803 590 aa, chain - ## HITS:1 COG:BH3092 KEGG:ns NR:ns ## COG: BH3092 COG1053 # Protein_GI_number: 15615654 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Bacillus halodurans # 1 582 1 584 589 1001 80.0 0 MANSKVIVVGGGLAGLMATIKAAEAGVPVQLFSLVPVKRSHSVCAQGGINGAVNTKGEGD STWEHFDDTVYGGDFLANQPPVKAMCDAAPGIIHLMDRMGVMFNRTPEGLLDFRRFGGTK YHRTAFAGATTGQQLLYALDEQVRRFETAGLVTKFEHWEFLGAVIDDDGVCRGIAAQDLR NMEVQTFSSDAVIMATGGPGIIFGKTTNSVINTGTAASAVYQQGVYYANGEFIQIHPTAI PGDDKLRLMSESARGEGGRVWTYKDGKPWYFLEEKYPAYGNLVPRDIATREIFHVCNDLK LGINGENMVYLDLSHKDPKELDVKLGGIIEIYEKFTGDDPRKLPMKIFPAVHYSMGGIWV DYNQMTNIPGLFAAGECDYSVHGANRLGANSLVSAIFGGMVAGPKAIEYIQGLDKHVEDM STAMFEREKQKHTDRYESLLKMDGKENAYVIHKELGELMTSNMTVVRYNKNLEATIVKIK EYKERFQNINMTDTARWNNQGVAFTRQLWNMLELSEAMTLGALLRNESRGAHYKPEFPER DDDNFLKTTKAKWAPEGPVIEYEDVDVSLIAPRKRDYTTDKKKKEKEGGH >gi|333603915|gb|AFDH01000117.1| GENE 23 23382 - 24059 645 225 aa, chain - ## HITS:1 COG:BH3093 KEGG:ns NR:ns ## COG: BH3093 COG2009 # Protein_GI_number: 15615655 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, cytochrome b subunit # Organism: Bacillus halodurans # 6 211 7 209 209 204 50.0 1e-52 MGKNSYFNRKLHSLLGVIPVGFFLIEHLLTNFEATKGPEAFVDQINWLNSLPLVLVLEIV GIWIPLLYHAVYGLYVAFTARNNVSRYGYFRNQMFLWQRITGVLTFLFVAWHFFETRFQV ALGNVEHERLGQTMHDIVSQPLLLTIYVIGVIAASFHFTNGMWSFLVSWGITVGPRAQRV SSYIWIGLFLVMSVMFIASLVAFKDPQFQELPVVSGMIGGVTSNG >gi|333603915|gb|AFDH01000117.1| GENE 24 24352 - 25251 876 299 aa, chain + ## HITS:1 COG:cynR KEGG:ns NR:ns ## COG: cynR COG0583 # Protein_GI_number: 16128323 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 3 290 5 286 299 117 29.0 4e-26 MEHLDVFAVVVEQASLNKASQVLNLSQPALSRKIMKLEEQLGVQLFSRKGKRLDLTRAGE IAYEYALEQRQGERRFLQTLYEYKTAGRHMSLTIGASLTTLQTTLPELVTMYLAEYPSTD MKALTGKTHEIVMMVKEKKVDIGLVASSIDQPGLACEPLFDDHLCLVLPQGHPYLDREEL SIADLNGLSMILFSKGTWYRVLTDELFHRFFIFPDVKMEIDSFEAIMRLVVTCQAATLLP KSYLHDHSSEQDGLCVRELPELMKTPRTTSLIFVKETHQNEAVAHFIRKAKAHFAGLSQ >gi|333603915|gb|AFDH01000117.1| GENE 25 25603 - 25824 140 73 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MDITPQEEIMIKALREAALPPLFMLIRIRNEISNDTVNVEESRRDVVVKTMEKYISPLWK DYHEGKNSQAKEE >gi|333603915|gb|AFDH01000117.1| GENE 26 25958 - 27235 1575 425 aa, chain - ## HITS:1 COG:BH4038 KEGG:ns NR:ns ## COG: BH4038 COG3263 # Protein_GI_number: 15616600 # Func_class: P Inorganic ion transport and metabolism # Function: NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain # Organism: Bacillus halodurans # 18 405 14 394 490 137 30.0 3e-32 MENALTQLIDYELYLFILIVVLGMLFGKLAGWLRLPDVALFLIAGMIFGQAFHWIAEPSS SLTNQFILVVGSTLILFDGGRNIRLSGLKHVWISVTLLSIPGVILTCAAVAAASHWFLGL PWLHALLLGAIISSTDPATLIPVFKQVRIRTKVRETVESESAFNDATGSILTFSLIAILL GTEHVSVASGAWQFVKTALGGLAVGAIIGYAGAFLTAHVKIGFLRDYATILMLAAALGSY LAGEHLGVSGFMATFTAGLIWGNSDVFKLHMEDKKQEMTHFSENVTVLMRMLIFILLGSQ VNFPLLLKYLWPSLGIIFVFMFIARPLVVLICALPDRKAKWTWREIVFMFWVRETGVIPA ALSGMVAGLGIAHADLIASVTFMAVLITILFQASTTAFVARKLGLEEDSGGEGAHGLPHA KPGPQ >gi|333603915|gb|AFDH01000117.1| GENE 27 27260 - 27922 890 220 aa, chain - ## HITS:1 COG:BH0597 KEGG:ns NR:ns ## COG: BH0597 COG0569 # Protein_GI_number: 15613160 # Func_class: P Inorganic ion transport and metabolism # Function: K+ transport systems, NAD-binding component # Organism: Bacillus halodurans # 5 219 4 218 218 223 52.0 2e-58 MAFIQYAVIGLGRFGSSLSQELTQLGHEVLGIDRDEEKVDEMSDKLTHTVVADATDEEVL RSLGVRNFDCAVVAIGDNIQASIMAAILLKELGVKTVVAKALTDQHAKVLEKIGVDRIIF PERDMGVRVAHQLVSPNLLDYIELSKNYTIAELVVSRRISGLTLKELDPRAKYGCSIVAI NKTDDVIIAPTAEDVLHEKDVMVVIGTKEQIDTFESRAIR >gi|333603915|gb|AFDH01000117.1| GENE 28 27937 - 29280 1207 447 aa, chain - ## HITS:1 COG:BS_yubG KEGG:ns NR:ns ## COG: BS_yubG COG0168 # Protein_GI_number: 16080162 # Func_class: P Inorganic ion transport and metabolism # Function: Trk-type K+ transport systems, membrane components # Organism: Bacillus subtilis # 1 447 8 445 445 351 48.0 2e-96 MLKKSRFTPPQILVLGFALIILIGSGLLMLPVSSTDGLPLPFIDALFTATSATCVTGLVV VDTGSHFTMFGQIVIISLIQIGGLGFMSMATLFAFILRKKISLRERLLLQEALNQGSMEG IVRLFRKVLIYSLSIEGIAAVLFTARWSMDLGFPKGLYYGIWHAVSFFNNAGFDLFGPIT GPFSSLTAYADDFITNVVTMALIVLGGIGFIVMSDVMDYRKTKRLTLHSKVVLSATSILI VTGALVIFIFEYSNSKTLGSLDFGGKILASFFQSVTPRTAGANTLDLASLRQATQFFMII LMFIGASPGSTGGGIKTTTFTMLVGAIVAMVRGKEDIVFFRNRLGKERILKAITLTMFAL FLVIFVTMLLSTTEDHEFLMILYEVTSAFGTVGLTLGLTTKLTVFGKVMIALTMFAGRLG PLTLAYALQPKAEKELYRYPEGKITIG >gi|333603915|gb|AFDH01000117.1| GENE 29 29667 - 31325 1777 552 aa, chain + ## HITS:1 COG:no KEGG:PPE_03874 NR:ns ## KEGG: PPE_03874 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 43 536 65 563 592 276 34.0 3e-72 MKKYGLDKPLLLLALTGFLLYAAVVFIYNTGAAPAGSDPYETAAYITKEQAAETAVAWLR QRQGADTVNGSGVVTGSGAPGTFVSYQSEKELSGYLTKEKLQTLYDKSYASRVPVDYYRV EVTEASPSVRKWIIDIHMTTKAVIGWSGIGGEAQAAVSAADAEKLAREAIARQGYEEAEF ERISPPAAKSGLLLFERRKEPVGDAKLTIGVKLDGTSVSSFTQSFRLPDAFTSWLEHQED TASMWTRISLWGNGLMALIALGYTVLKWRTVDFSRGVLLTAVYAVIYVMNNINMYPAYKA GGTLTSSGQEAMLSIVLINFVTLLMAAAVYFSFTAGDALWRREGKSVMPRWRDADFGSRV TRSMAQGYLLCLFLLGLQQVLFLVAEKGFGVWSVNDPMSSPRNMLQPALLPLMAWAAGIS EEATFRLLGIALFSRLLRFKWLAVLLPSLIWAAGHTAYPIYPVYTRLIEVTVLGLVFGYA FLRYGFLTALFAHTAMDSILMGLSLLTGEGLAAGTPALGLLYMALPAAVALALSWLHKLR FVIGSRRNRRPV >gi|333603915|gb|AFDH01000117.1| GENE 30 31537 - 33594 2224 685 aa, chain - ## HITS:1 COG:BH3097 KEGG:ns NR:ns ## COG: BH3097 COG0322 # Protein_GI_number: 15615659 # Func_class: L Replication, recombination and repair # Function: Nuclease subunit of the excinuclease complex # Organism: Bacillus halodurans # 19 675 2 589 591 705 56.0 0 MTEERGGEPLHRMTREESEEHIRNKLALLPDKSGCYLMKNAEGTIIYVGKAKVLKNRVRS YFTGSHDGKTQRLVSEIRDFEYIVTSSNIEALILECNLIKQHYPRYNVLLKDDKSFPYIK ITHEEHPRLEVTRKIVKDKGKYFGPYPNAFAAQETKKLLDRLYPLRKCKTIPDRVCLYYH LGQCLAPCEHDITRQQNDEMVQGIVRFLNGGHEQVKQELTSKMHAAAEDLNFERAKELRD LIVNIDAVMEKQKITTTDVVDRDIFGYVADKGWMCVQILYMRQGKLIERHVTMFPYYGDE YEDFITYVMQVYSENPALPKEIFLPGRSQQELPAESLSAGMEAAAGAAVRQAGEDGGSPE SLREAPEEAASPSPLAAEAEELAGSDSRSMPTTAEQKDVKEALESWLKVKVHFPQRGLKK QMVDMARDNARVGLEEKFRLIERDAQRTVLAVENLGSWLGTGPVTRIEAFDNSNIQGSDP VAAMVVFTDGKPDRKEYRKYKIKTVQGPDDYESMREVIRRRYERVLKENLALPDLIIVDG GKGQMSVAIDVLENELGLFVPVCGLSKDVKHKTAMLLAGDPAEVVPIPRDSQEFYLLQRI QDEVHRFAITFHRERRAKSMVVSQLDAIPGIGEKRRKLLLKHFGSVKKIKEAAVEDFRPL GIGEKLAAQILTALRGEQEQEEPSI >gi|333603915|gb|AFDH01000117.1| GENE 31 33721 - 34035 342 104 aa, chain - ## HITS:1 COG:BH3098 KEGG:ns NR:ns ## COG: BH3098 COG0526 # Protein_GI_number: 15615660 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Bacillus halodurans # 1 103 1 103 104 139 69.0 2e-33 MAIVNVTDQSFKGEVEGEGTVLVDFWAPWCGPCKMIAPVLEELAKEEESLKIAKVNVDDN PESASRFGVMSIPTLIVFKNGQPVDKVVGFQSKDALKNVLSRHQ >gi|333603915|gb|AFDH01000117.1| GENE 32 34295 - 34441 218 48 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSDPKHPELHLNEEPRNDLMDVALGFGGFFAVLMIIFIIGVIIKLVIG >gi|333603915|gb|AFDH01000117.1| GENE 33 34635 - 35642 1165 335 aa, chain + ## HITS:1 COG:BS_yhfV KEGG:ns NR:ns ## COG: BS_yhfV COG0840 # Protein_GI_number: 16078102 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Methyl-accepting chemotaxis protein # Organism: Bacillus subtilis # 2 335 25 394 432 124 27.0 2e-28 MIQLSDDRMKQVRFTGITENDLQLLKANEPAFKEIVEEVVEQLYEQIAAEPELRDLISRH STLERLKQTQADYFLSMASGVLNEQYIQNRLIVGRVHSRIGLTTEWYLGTYMLYLDLSLR HFKRVLPDGAWLEVVHALTKMFNLDSQLVLEAYEHDEKAKIQQLADDQATMLSGISKAVQ DLASMMVELSSSSQIVAETAVQTAESQDKSHQYLKDLEEEVGHIHAMGALMKEVSEQTHL LGLNAAIEAARAGDAGRGFEVVANEVRKLASRSRESLELIEDKLTAIRTILGTVHGESEQ TSIYARTQAASSQELSSFVQMVEQVAHDLERLKKK >gi|333603915|gb|AFDH01000117.1| GENE 34 35784 - 36734 1266 316 aa, chain - ## HITS:1 COG:BH3144 KEGG:ns NR:ns ## COG: BH3144 COG1484 # Protein_GI_number: 15615706 # Func_class: L Replication, recombination and repair # Function: DNA replication protein # Organism: Bacillus halodurans # 1 314 1 307 311 192 36.0 7e-49 MESLSDMLKQMPKSSWMQRAEEQAKQVLEDPLILKLRGQYPQLDDHTLKINMNRLYQYAR EHKNCLNCPGLERCPNDMQGHYTMLNVEDNGGRTYIHEEKTACRKFIAKQSQDAIRSRIR TFHIDEQALSREHTYTDILRTDMERAKAVDFLNDYVMRTTEEGLQKKGLYLQGSFGTGKT FLMCYMLYQLAKKGFTGAIVYMPDFAEDLKGMFGEPQKLKETIELLKETDLLVFDDIGAE NLNPWLRDHVLGAILNYRMNRKPTFFTSNYDLDALEKHFSFTNKDGDEEYKGQRIMDRVR PYVEVVTVDGYNKRGA >gi|333603915|gb|AFDH01000117.1| GENE 35 36768 - 38276 1798 502 aa, chain - ## HITS:1 COG:BH3145 KEGG:ns NR:ns ## COG: BH3145 COG3611 # Protein_GI_number: 15615707 # Func_class: L Replication, recombination and repair # Function: Replication initiation/membrane attachment protein # Organism: Bacillus halodurans # 14 457 13 425 485 82 24.0 2e-15 MRLTNLLHFTENHRFCVYRDFALSSLDYKMLSSIYQPMIGGYAVSLYHTLYQQVPSDKTG YAGLEQQRKLFLSLELDPGERSRKLFIEQSSKLEAVGLLQTSRIYMQDEDDYIYEYTLSC PLSPNEFFRNQHLTLLLRDKIGKFLLLSLRDELTMPEPAELAGADSENLSVPFYELFRLN TQVIDYELEQALYEASAGKQAAQALDVTTKGYAYADLITRYPRESFNRIYVENLKYKPET MISINMVARKYSLTLQETVRLLDEDGMFDEDGELQIDSLQYKANLYFRQGKKREEERERF LHRAEPGDAGDNTADSEEGTRSVEMQYYLEVPAFLQGAHNEHQYNSLLKNEPYTLVLQSF FTQGPVPNGVLDIFEKIDLNYKLKEEVINVLIHYIHIDKRSWAKSSIEAVASDMLGKQIA SFEQAVEYVRQRLQFRQQAAAKAAAAKASGGYAGKGKARTAGKQMKPQIPIVQNKGQTSR VTEEELEAMLRKAKKLDEMFNS >gi|333603915|gb|AFDH01000117.1| GENE 36 38542 - 38766 339 74 aa, chain + ## HITS:1 COG:lin2628 KEGG:ns NR:ns ## COG: lin2628 COG1983 # Protein_GI_number: 16801690 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Putative stress-responsive transcriptional regulator # Organism: Listeria innocua # 1 59 1 58 66 59 45.0 2e-09 MNKLFRSRTDRKLTGLCGGLAQLLGVDATIVRLIAVIGAVFSFGTFTLIYIVASLLVPKE PYAGYGYHDSYHTY >gi|333603915|gb|AFDH01000117.1| GENE 37 38860 - 39123 462 87 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_4831 NR:ns ## KEGG: Pjdr2_4831 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 1 87 1 95 95 67 48.0 2e-10 MIQLVIVIVLMFVLFFGLGFILNMLMKTTWFPVYAFVALIIGLSFYYSDKMTSITAVDIA PVIGGLIGAVVSGTTIRTLRIKGFKMF >gi|333603915|gb|AFDH01000117.1| GENE 38 39317 - 40063 976 248 aa, chain + ## HITS:1 COG:BH3825 KEGG:ns NR:ns ## COG: BH3825 COG3253 # Protein_GI_number: 15616387 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus halodurans # 1 237 13 250 261 339 68.0 2e-93 MSEAIETLEGWYALHDFRRMDWNAWKEASPEERKRAEDELRSFIGEWATIEDNKEGSTAL YSIVGQKADILFMQLRETLEELNDLETAFNKSAFAKYTIPVYSYVSVVELSSYMAKPGSD PMENPEVVARLKPTLPKAKHICFYPMNKRRQGSDNWYMLDLESRKAMMRSHGMIGRSYAG KVKQIITGSVGFDLWEWGVTLFADDALQFKKLVYEMRFDEVSARYGEFGDFYVGNLLDND RLGRLLDV >gi|333603915|gb|AFDH01000117.1| GENE 39 40444 - 40722 355 92 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_4833 NR:ns ## KEGG: Pjdr2_4833 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 1 92 1 86 86 85 65.0 5e-16 MRHCSVQVRGLLTRSELDRYNALIEVGHYLENQKEYGHVAVVQKEIDILILPAIERLKEK SRQRDRDTEDYLRRKAEMEAEMKRIAEEDDED >gi|333603915|gb|AFDH01000117.1| GENE 40 40843 - 42009 1206 388 aa, chain - ## HITS:1 COG:BS_yumB KEGG:ns NR:ns ## COG: BS_yumB COG1252 # Protein_GI_number: 16080263 # Func_class: C Energy production and conversion # Function: NADH dehydrogenase, FAD-containing subunit # Organism: Bacillus subtilis # 1 388 11 404 406 437 57.0 1e-122 MGAGYGGVVTSLRLQKLLNYNEADVTLVNKHDYHYITTHLHMPAAGTDKPDNARVNISSL IDEFKVDFVKSTVVQIRPGEKKVILEDGTLSYDFLVIGLGGEPETFGIPGLKEYAMTIRS INSVRHIREHIEYQFARFKQEPDRKELLTFVVGGAGFSGIEFVGELADRIPELCKEFDVD PALVHIYNIEAAPTALPGFDPELVEYAMRLLTDKGVTFKIATAIKECTPEGVLIAGDEFI KAGTVIWTGGIRGNHLLEDAGFETMRGRIKVDEFLRAPGYDNIFVTGDCSLVMNPEGRPY PPTAQIATQQGENCALNLVASIRGNALKEFAFVNRGTVASLGKGEAIGIVGTKKMKGGTA ALMKKVIDMRYLYTIGGLPLVVRKGKLR >gi|333603915|gb|AFDH01000117.1| GENE 41 42434 - 43438 1086 334 aa, chain + ## HITS:1 COG:BH3408 KEGG:ns NR:ns ## COG: BH3408 COG0492 # Protein_GI_number: 15615970 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Thioredoxin reductase # Organism: Bacillus halodurans # 7 332 3 329 330 436 64.0 1e-122 MSETEIQHDQVKDLIIIGGGPAGMFAAFYGGMRQASVTLIESMPQLGGQLAALYPEKHIY DVAGFPKVTAQELVNSLAVQMNHFPIHVCLEEKVLQVVKKEERLFEVITDKESHLGKAVI ITGGVGAFEPRRLELPEAARYEKTNLHYFVSDLNSFAGQKVLISGGGDSAVDWSLMLEPI AEQVTLIHRRDKFRAHEHSVEKLMNSRVNVVTPTEITGFEGDDAIRKVTLKHVKTGEETV LDVDAVVVNFGFVSSLGPIAEWGLQIENGSIVVDSRMETNVPGIFAAGDITTYPGKLKLI AVGFGEAPTAVNNAKVYLDPSAKLSPGHSSNMKF >gi|333603915|gb|AFDH01000117.1| GENE 42 43540 - 43794 253 84 aa, chain + ## HITS:1 COG:no KEGG:BBR47_47580 NR:ns ## KEGG: BBR47_47580 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 1 71 1 70 96 69 46.0 4e-11 MSTFCTVCNGMDELSAVCPHCGSGSASDCGRVNDYFGPYSPYRPIEDISMTNGYPDVTRS ECLHMLYCEACGASSVLAVSESLA >gi|333603915|gb|AFDH01000117.1| GENE 43 43835 - 43990 183 51 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRQISDETLVESYFKALDLELESEFVDLLLGEINRRHIVLEAYHSDEAALA >gi|333603915|gb|AFDH01000117.1| GENE 44 44433 - 44594 282 53 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MIVYDIVVNGEVKETIRPQKLRLKELYAYMLEQSKQMKMKYGENTRVLKRILY >gi|333603915|gb|AFDH01000117.1| GENE 45 44661 - 45113 431 150 aa, chain + ## HITS:1 COG:ECs4156 KEGG:ns NR:ns ## COG: ECs4156 COG1970 # Protein_GI_number: 15833410 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Large-conductance mechanosensitive channel # Organism: Escherichia coli O157:H7 # 8 120 1 118 136 118 55.0 3e-27 MENQPKKIQIIGEFKKFIMRGNVVDLAVGVIIGAAFNKIVTSLVNDILMPPIGLLLGKMD FKNLKLPLSGGVTINYGAFINNIIDFIIVSAVIFLMIRQMNKLRRKEEPQEEVKSEPTKE CPYCISEIAAKATRCPRCTSVLEPEALPQS >gi|333603915|gb|AFDH01000117.1| GENE 46 45299 - 45664 449 121 aa, chain - ## HITS:1 COG:BS_yutM KEGG:ns NR:ns ## COG: BS_yutM COG0316 # Protein_GI_number: 16080269 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 4 119 5 120 120 124 54.0 3e-29 MSLIKISEEATDKIKEMLAAEETPDLFLRVGVKEGGCSGFSYGMGFDNDQKEEDKVLDFS GLKVVVDPESAKYLYGVEIDYKDAGMGGGFTIDNPNAVASCGCGASFKVKGEEGKAEKCD D Prediction of potential genes in microbial genomes Time: Sun Jul 17 10:35:30 2011 Seq name: gi|333603902|gb|AFDH01000118.1| Paenibacillus sp. HGF7 contig00205, whole genome shotgun sequence Length of sequence - 8837 bp Number of predicted genes - 14, with homology - 5 Number of transcription units - 5, operones - 5 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 457 - 491 7.0 1 1 Op 1 . - CDS 498 - 950 216 ## 2 1 Op 2 . - CDS 964 - 2865 225 ## - Term 2867 - 2897 3.6 3 2 Op 1 . - CDS 2964 - 3176 69 ## 4 2 Op 2 . - CDS 3196 - 4056 519 ## COPRO5265_0075 anion ABC transporter, anion-binding protein 5 2 Op 3 . - CDS 4040 - 4636 238 ## Bcep18194_B2540 putative protein-S-isoprenylcysteine methyltransferase-like - Term 4846 - 4881 -0.9 6 3 Op 1 . - CDS 4979 - 5095 67 ## 7 3 Op 2 . - CDS 5149 - 5598 130 ## - Prom 5623 - 5682 4.6 8 4 Op 1 . - CDS 5701 - 6045 165 ## gi|319654630|ref|ZP_08008711.1| hypothetical protein HMPREF1013_05333 9 4 Op 2 . - CDS 6076 - 6519 138 ## SCAB_32881 hypothetical protein 10 5 Op 1 . - CDS 6774 - 7046 115 ## 11 5 Op 2 . - CDS 7080 - 7430 61 ## gi|322382456|ref|ZP_08056351.1| hypothetical protein PL1_2395 12 5 Op 3 . - CDS 7505 - 7633 189 ## 13 5 Op 4 . - CDS 7677 - 7865 98 ## 14 5 Op 5 . - CDS 7930 - 8415 273 ## - Prom 8462 - 8521 6.8 Predicted protein(s) >gi|333603902|gb|AFDH01000118.1| GENE 1 498 - 950 216 150 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MPFIFMWAAILLFGLLFGIEMDTGKVMKTRTVMQGGADAATLAGAMQNHQVVTKTDGSGA PVEFDFVLNTNSSPEDAAIQTWEKNKANWTSNVGQGTTPYLGRTSDQKGVTLQVLQTVDN TITQNVTNTLFKKPIQSEINVPVRSVSKIP >gi|333603902|gb|AFDH01000118.1| GENE 2 964 - 2865 225 633 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKKTIAFLQAFLLLILLIPVSSVSAASSSYVDDLFLKYFGNAKAGDMELTIKQQFDEIKK EYQYSNTEYLNKISGLFYNVSGTTGLDQKVKTRFSKLNTWNAVFFNGYEDKISAVIPFNN YNIEKSADWGDTDINNTGYALIPRNIFLIPDVANSIDPSSATKEQKNYQINWMMDKLNKL DENSFGVYRVDGRTNIAIARIASEMGGLFQSSEPYPYDKSKEATDPHGLMIFRMTPYPSF TKTEVLDKNLSVTYKAYGYVDHTNYVKLVNKSGKEKELRKFHVSVGASDFNKDGDWKDGT NVEFSESFNTRLEDIRSALGTGEMKLIMNDGFGRLTEKSITIPEAGAPNLKITTVKAVCD KNNQMTISVTVEGSAEVKSISTQLTIKADGRVLSTETITLTPGEPKIITKVLPCDNSKIV ETEVNPDKKHPENESNWDDNKKDTEVLKPTDPGQVSIDEKSLQMKFGKIPQPVRLTSSFT APVIVTNNSSKPKTTTLNFTMKGTMNQSYQIPHYTCGPQSCWTWYETKYRNLPLTISGKS PTLTVPAYGSVTWNVSSGLNYTISGGDPSAQYGMNLNVWGPGSEYGVPDSSARYFPEIKV TADNGSEYLNPTINMFIETNYGAQKPKPPVLTE >gi|333603902|gb|AFDH01000118.1| GENE 3 2964 - 3176 69 70 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSILGYALVVYLIIGFLIAVGITCYLVYKNRTDGMKITAEPNISLFIMAPFAFLYITFFW AFGIKFTNLD >gi|333603902|gb|AFDH01000118.1| GENE 4 3196 - 4056 519 286 aa, chain - ## HITS:1 COG:no KEGG:COPRO5265_0075 NR:ns ## KEGG: COPRO5265_0075 # Name: not_defined # Def: anion ABC transporter, anion-binding protein # Organism: C.proteolyticus # Pathway: not_defined # 34 147 290 401 401 104 47.0 4e-21 MKNPLKKLLITAVLSVSVFGVSNAQAANNYDVKVNVNGKIIQSDEPAYIKSEVGLTYVPV RFVSEALGATVDWADSSKTVLIDFRGHRVSIDVGSKTARVDSKTVTLEAPAEKDGERTFV PLRFVSETLGATVLWNNEDRIVDIAMPIVTPDPGKKPYETWTPDPENRKLADSFFPALKW DASAKKLKVHIPQFEGYRVVAKYIVPGKNQLLETNKDYSFEASSNFILDIAILKNGEGDI KETYTIYSTSADGNLASHNLPNNLGLVVLDARGNAVTLKAVFDGLK >gi|333603902|gb|AFDH01000118.1| GENE 5 4040 - 4636 238 198 aa, chain - ## HITS:1 COG:no KEGG:Bcep18194_B2540 NR:ns ## KEGG: Bcep18194_B2540 # Name: not_defined # Def: putative protein-S-isoprenylcysteine methyltransferase-like # Organism: Burkholderia_383 # Pathway: not_defined # 19 179 53 213 233 63 25.0 7e-09 MIQVVNILLGLWSVHQAWYATTLIQEFNIQVFAIMLFIFTEAVQGVLLIFAPAPKVKVRR PTNFVWVVLLLICVMEAGVNVVKSPLPHSPGFILILLGQILSFWAVISLGRMFGIFSEAR GICTSGPYKYLKHPMYVGYAFTYIGLALQTDSPKAWYFLLAAILIQVIRAYQESEALAKL RNKEKIIIQRSMPNEEST >gi|333603902|gb|AFDH01000118.1| GENE 6 4979 - 5095 67 38 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MELYYPDVEIILLLSHSLSHLSWDPYTATYMTLVVTRL >gi|333603902|gb|AFDH01000118.1| GENE 7 5149 - 5598 130 149 aa, chain - ## HITS:0 COG:no KEGG:no NR:no METNDFGIVIYGSTLSMLRKQAKLTFKTLSEKINISASYLNKLEKNRVKNPGIKIANQLA EFYQVPLSAISNIEVPLSINSNSNLDNSEDSLKRVDLIKELFMAEILLFKGKEIPTDKFV RAQMEMALEMGFAYVLSQQEERQSFDKEH >gi|333603902|gb|AFDH01000118.1| GENE 8 5701 - 6045 165 114 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|319654630|ref|ZP_08008711.1| ## NR: gi|319654630|ref|ZP_08008711.1| hypothetical protein HMPREF1013_05333 [Bacillus sp. 2_A_57_CT2] hypothetical protein HMPREF1013_05333 [Bacillus sp. 2_A_57_CT2] # 1 74 1 74 132 82 58.0 1e-14 MNKQVVLDVLNSLEVIERQGGEDPYILVANNEENLSKLVAVGIPLEKLACYGDEETFCIL SLAFGERYADEVKGWTLVRWGPIDDELRYRVLNHEGTAADAERLLRELEPHLFG >gi|333603902|gb|AFDH01000118.1| GENE 9 6076 - 6519 138 147 aa, chain - ## HITS:1 COG:no KEGG:SCAB_32881 NR:ns ## KEGG: SCAB_32881 # Name: not_defined # Def: hypothetical protein # Organism: S.scabiei # Pathway: not_defined # 11 134 63 187 259 101 47.0 8e-21 MLDSMRGSNPLFVTAPDVVGDASGTLDMFGHWEPVIHSYGLPVAFVLQDGQEKLCMPWGK LDAVFIGGSTEYKLGQEVRWLVREAKWRGKWVHMGRVNSIQRLSYARDIGCDSVDGTGYS RFPDSNIPEALSFLKYEQTTLTIDEAI >gi|333603902|gb|AFDH01000118.1| GENE 10 6774 - 7046 115 90 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNDINFCYRIEPAAEMAYNTDTGESAAAYCKISFGDVKKLPTSEDQAVMHKNVRNYVAQH INKDPIHVTPISFKEWVDNQEDEVSWEGQI >gi|333603902|gb|AFDH01000118.1| GENE 11 7080 - 7430 61 116 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|322382456|ref|ZP_08056351.1| ## NR: gi|322382456|ref|ZP_08056351.1| hypothetical protein PL1_2395 [Paenibacillus larvae subsp. larvae B-3650] hypothetical protein PL1_2395 [Paenibacillus larvae subsp. larvae B-3650] # 1 113 1 113 116 127 53.0 3e-28 MQQLINGLKKDILEMIQWQNANPDAAEVIKTAIRKYRNEIKRAIEDMQQPPFEVGDSVEL CSSSFEDSGLLNGDVGEVLEIKSASDSIGQKEWDVRVSWENGAEECWIGADNFTGF >gi|333603902|gb|AFDH01000118.1| GENE 12 7505 - 7633 189 42 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGMGPGKEKIKEALEVIKILIETDKADLAVQEINELLANDLQ >gi|333603902|gb|AFDH01000118.1| GENE 13 7677 - 7865 98 62 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGKNYGFVVVKEHYTQEDIHEIQCFCFTKDKAEEEQQRIQNEIDPAHNEWKVVINPFVEI VT >gi|333603902|gb|AFDH01000118.1| GENE 14 7930 - 8415 273 161 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MYSMNDIEQLQRLGSIEMANIELAREKFAHIKRVLSDVVMIEDGIHQHFIRTNDGTARLE RWLSDFMHQRDMLEEELAGKRHAIRQINGLLSPAGTVEKLRSTLTDAIDAMLTEYHTLNN FETHVPAVVLTLAQRKHYLEGEIAKFQADLDALPKEEQTKG Prediction of potential genes in microbial genomes Time: Sun Jul 17 10:37:23 2011 Seq name: gi|333603850|gb|AFDH01000119.1| Paenibacillus sp. HGF7 contig00032, whole genome shotgun sequence Length of sequence - 46615 bp Number of predicted genes - 48, with homology - 41 Number of transcription units - 31, operones - 12 average op.length - 2.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 946 539 ## PROTEIN SUPPORTED gi|229845805|ref|ZP_04465917.1| 50S ribosomal protein L31 - Prom 992 - 1051 6.2 + Prom 1019 - 1078 3.7 2 2 Tu 1 . + CDS 1126 - 1680 759 ## gi|167461878|ref|ZP_02326967.1| hypothetical protein Plarl_04880 + Term 1745 - 1779 0.5 3 3 Tu 1 . - CDS 1986 - 2141 103 ## 4 4 Tu 1 . - CDS 2322 - 2708 338 ## COG0736 Phosphopantetheinyl transferase (holo-ACP synthase) - Prom 2752 - 2811 1.5 - Term 2814 - 2854 9.7 5 5 Op 1 . - CDS 2923 - 3732 1036 ## COG0171 NAD synthase - Prom 3765 - 3824 2.9 - Term 3773 - 3828 14.6 6 5 Op 2 . - CDS 3864 - 6149 2458 ## COG3325 Chitinase - Prom 6174 - 6233 2.5 - Term 6580 - 6608 -1.0 7 6 Tu 1 . - CDS 6615 - 7049 498 ## Pjdr2_5145 protein of unknown function DUF1094 - Prom 7095 - 7154 7.7 8 7 Tu 1 . - CDS 7175 - 7300 222 ## - Prom 7411 - 7470 2.0 - Term 7545 - 7571 0.3 9 8 Op 1 . - CDS 7574 - 8272 925 ## COG1842 Phage shock protein A (IM30), suppresses sigma54-dependent transcription 10 8 Op 2 . - CDS 8275 - 8790 637 ## COG1983 Putative stress-responsive transcriptional regulator 11 8 Op 3 . - CDS 8794 - 9456 775 ## COG1842 Phage shock protein A (IM30), suppresses sigma54-dependent transcription 12 8 Op 4 . - CDS 9492 - 9767 431 ## gi|167464233|ref|ZP_02329322.1| hypothetical protein Plarl_17029 - Prom 9822 - 9881 3.1 + Prom 9781 - 9840 2.5 13 9 Tu 1 . + CDS 10012 - 11079 736 ## BcerKBAB4_0726 metallophosphoesterase + Prom 11224 - 11283 5.2 14 10 Tu 1 . + CDS 11314 - 12588 1463 ## COG2081 Predicted flavoproteins - Term 12886 - 12923 1.5 15 11 Tu 1 . - CDS 13120 - 13602 519 ## Pjdr2_5151 hypothetical protein 16 12 Op 1 7/0.000 - CDS 13712 - 14926 1448 ## COG4473 Predicted ABC-type exoprotein transport system, permease component 17 12 Op 2 . - CDS 14945 - 15643 244 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein - Prom 15710 - 15769 3.6 + Prom 15661 - 15720 4.7 18 13 Tu 1 . + CDS 15776 - 16090 305 ## Bache_0269 hypothetical protein + Term 16131 - 16178 12.7 + Prom 16194 - 16253 3.5 19 14 Tu 1 . + CDS 16290 - 17243 1076 ## COG0119 Isopropylmalate/homocitrate/citramalate synthases + Term 17249 - 17296 7.3 - Term 17198 - 17237 1.5 20 15 Tu 1 . - CDS 17249 - 17374 78 ## - Prom 17564 - 17623 3.8 + Prom 17259 - 17318 5.0 21 16 Tu 1 . + CDS 17414 - 19510 1522 ## + Term 19734 - 19790 16.1 22 17 Tu 1 . - CDS 20233 - 20445 88 ## - Prom 20519 - 20578 1.9 23 18 Op 1 18/0.000 + CDS 20518 - 20877 322 ## COG1780 Protein involved in ribonucleotide reduction 24 18 Op 2 24/0.000 + CDS 20864 - 22948 2327 ## COG0209 Ribonucleotide reductase, alpha subunit 25 18 Op 3 . + CDS 23168 - 24127 1339 ## COG0208 Ribonucleotide reductase, beta subunit + Term 24200 - 24243 11.2 - Term 24188 - 24231 11.2 26 19 Tu 1 . - CDS 24404 - 24811 379 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - Prom 24851 - 24910 6.8 - Term 25016 - 25056 9.7 27 20 Tu 1 . - CDS 25124 - 26497 1806 ## - Prom 26572 - 26631 3.7 28 21 Op 1 9/0.000 - CDS 26670 - 27887 1343 ## COG0842 ABC-type multidrug transport system, permease component 29 21 Op 2 15/0.000 - CDS 27877 - 29166 1657 ## COG0845 Membrane-fusion protein 30 21 Op 3 . - CDS 29233 - 29802 681 ## COG1309 Transcriptional regulator - Prom 29824 - 29883 3.5 + Prom 29808 - 29867 2.1 31 22 Op 1 40/0.000 + CDS 30035 - 30736 825 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 32 22 Op 2 . + CDS 30726 - 32093 1548 ## COG0642 Signal transduction histidine kinase + Term 32290 - 32327 7.2 - Term 32273 - 32318 12.4 33 23 Tu 1 . - CDS 32322 - 32822 512 ## Pjdr2_2268 hypothetical protein - Prom 32906 - 32965 3.8 + Prom 32894 - 32953 1.9 34 24 Op 1 . + CDS 32978 - 33205 59 ## BPUM_1003 spore germination protein PA 35 24 Op 2 . + CDS 33202 - 33624 214 ## Pjdr2_2266 spore germination protein + Term 33666 - 33700 7.3 36 25 Op 1 . + CDS 33721 - 34419 590 ## BL01319 spore germination protein 37 25 Op 2 . + CDS 34416 - 34598 172 ## Pjdr2_2264 hypothetical protein 38 25 Op 3 . + CDS 34602 - 35087 415 ## GYMC10_2454 spore germination protein GerPE + Term 35276 - 35313 -0.4 - Term 35007 - 35045 -0.9 39 26 Op 1 40/0.000 - CDS 35069 - 35767 954 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 40 26 Op 2 . - CDS 35764 - 37242 1571 ## COG0642 Signal transduction histidine kinase - Prom 37328 - 37387 3.4 - Term 37380 - 37421 6.0 41 27 Tu 1 . - CDS 37466 - 38206 638 ## gi|167461935|ref|ZP_02327024.1| hypothetical protein Plarl_05165 42 28 Op 1 . - CDS 38326 - 39303 1121 ## COG4586 ABC-type uncharacterized transport system, ATPase component 43 28 Op 2 . - CDS 39335 - 40255 996 ## COG1686 D-alanyl-D-alanine carboxypeptidase - Term 40299 - 40331 -0.5 44 29 Op 1 3/0.000 - CDS 40473 - 41267 1031 ## COG3694 ABC-type uncharacterized transport system, permease component 45 29 Op 2 . - CDS 41264 - 42040 652 ## COG4587 ABC-type uncharacterized transport system, permease component - Prom 42096 - 42155 6.3 + Prom 42094 - 42153 2.3 46 30 Op 1 . + CDS 42246 - 45362 2679 ## COG0642 Signal transduction histidine kinase 47 30 Op 2 . + CDS 45447 - 46046 759 ## PPE_02014 hypothetical protein + Term 46108 - 46167 16.4 48 31 Tu 1 . + CDS 46307 - 46613 275 ## Predicted protein(s) >gi|333603850|gb|AFDH01000119.1| GENE 1 2 - 946 539 315 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229845805|ref|ZP_04465917.1| 50S ribosomal protein L31 [Haemophilus influenzae 7P49H1] # 50 312 11 270 378 212 42 4e-54 MAELERQQERNEPVPAEEGQVPEKPKKTKSASKTDKTPPVEYPTEQKRFFSANLLAWYLI HRRDLPWRRSRNPYYIWISEVMLQQTRVDTVIPYFHRFVDLFPTVEALAVAPEDEVLKAW EGLGYYSRARNLQQAVREVHERYGGIVPDTKEDISSLRGVGPYTSGAILSIAYNKPEPAV DGNVMRVLSRYFLIEDDIAKPAARVGMERLARDLIPEGSAGDFNQALMELGAMVCTPRSP QCLTCPVMDHCSGRLAGREETLPVKSKAKPPKPERRLVALIEGEGQNAGRILIRQRPQEG LLARMWELPHVELPA >gi|333603850|gb|AFDH01000119.1| GENE 2 1126 - 1680 759 184 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|167461878|ref|ZP_02326967.1| ## NR: gi|167461878|ref|ZP_02326967.1| hypothetical protein Plarl_04880 [Paenibacillus larvae subsp. larvae BRL-230010] hypothetical protein PL1_3121 [Paenibacillus larvae subsp. larvae B-3650] hypothetical protein PL1_3121 [Paenibacillus larvae subsp. larvae B-3650] # 21 177 7 161 162 67 30.0 5e-10 MKEARTAPGRPAVIPSGFRWLAPYLAVWGIQGVVAAAVDFFQEWVDLDWLAQGIFAAAVL ASIVIWVKMRRKAGAAREGSISLVMLAFPAVMLIGAVAVLEYVQAVGPYFVALLRAFLLS VVFVLLGAAADRRLFWLGLWLFALTIVMALWYLGYSGVILQGMSGLSLLVCAWSLTRPLA PVTG >gi|333603850|gb|AFDH01000119.1| GENE 3 1986 - 2141 103 51 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKVRSRGKTRTVSERDCYRTASEMENYRTANEKTGSYRTVNEPESYNLALS >gi|333603850|gb|AFDH01000119.1| GENE 4 2322 - 2708 338 128 aa, chain - ## HITS:1 COG:BH0518 KEGG:ns NR:ns ## COG: BH0518 COG0736 # Protein_GI_number: 15613081 # Func_class: I Lipid transport and metabolism # Function: Phosphopantetheinyl transferase (holo-ACP synthase) # Organism: Bacillus halodurans # 1 127 1 116 119 97 44.0 7e-21 MIIGVGMDMVDIARVAGLLREESGDRFMRRILTEEEQQLAAGKRGRLAEFTAGRFAAKEA VVKALGCGIGRQAGFHDVSVLPDESGKPHCFLSEGARQRLGLGQDVVIHLSITHTDTMAA AYAVVERP >gi|333603850|gb|AFDH01000119.1| GENE 5 2923 - 3732 1036 269 aa, chain - ## HITS:1 COG:BS_nadE KEGG:ns NR:ns ## COG: BS_nadE COG0171 # Protein_GI_number: 16077382 # Func_class: H Coenzyme transport and metabolism # Function: NAD synthase # Organism: Bacillus subtilis # 1 263 1 260 272 211 45.0 1e-54 MSLQQEIIQELGVKPQIDVQEEIRRRVDFLKQYVKSAGVSGLLIAISGGIDSAVAAGLCK IATDELTEESGKEYKTVGVFQPYGTQEDIHDSYATAEAFNLKYRMETNIEEAVNEIALEV EFGLKNAGDSRHMSKEGKGNVKARTRMVVQYAIAFEMNLLVVGTDHASEAITGFFTKWGD GAVDITPLSSLNKRQVRALAAELGVPDSVLHKAPTAGLWEGQTDEKELGVSYEDNSDYLE GKAIDPAAAEKLEKHYMKTRHKRGRIPGI >gi|333603850|gb|AFDH01000119.1| GENE 6 3864 - 6149 2458 761 aa, chain - ## HITS:1 COG:BH0916_1 KEGG:ns NR:ns ## COG: BH0916_1 COG3325 # Protein_GI_number: 15613479 # Func_class: G Carbohydrate transport and metabolism # Function: Chitinase # Organism: Bacillus halodurans # 9 449 11 432 450 459 52.0 1e-129 MKSNKKIKMTWLGFFALLLALLPLFNTGAGRASAAEPAKIVGYFTSWGIYGRNYQVKDID GSKLTHLNYAFADICWGGVHGNNSTDSPNKQTWSCTDSHVPLQSKSVPNGTIVLGEPWAD VNTPYAGYTYEECDQKALCGNFAGLRDLKKKNPSLKTLISVGGWTWSNRFSDVAANATTR ETFANSAVEFIRTYGFDGVDLDWEYPVAGGLSGNTYSPADKQNYTLLLKKVREKLDAAGT ADGKKYLLTIASGASQKYANNTELSEIAKTVDWINIMTYDFHGGWEKSTNHNAALYPDPN DPSTGEIKKFNTSDAIDIYFQSGVPANKLVLGLPFYGKGWKGCPPGPNNDGQYQTCVGGW DGSVLPTGTWDDWASGNSGTFDYGDIMANYVNKNGFTRYWNDTTKTPYLFNPTSGTFISY EDTQSIAAKTAYIKSKGLAGAMFWETSSDCRTSPKFSCTTKLLDKVAADLLSPAVPDTQA PTAVTNLVSTGKTSTSVTLSWTAATDNVGVAGYEVSYGTTKVNVTGTTANITGLTANTAY TFTVKAKDAAGNVSAPASVTVTTDGGTTTPDTQAPTAVTNLVSTGKTSTSAALSWTAATD NVGVTGYDVTYGTKTVSTTATSLNVTDLTPNTAYTFTVKAKDAAGNISAPASVTVTTDPA TNPGSPVQPTFTVTSDWGTGYNFSFSIKNTGTTPITNWKLEFDYTGSITSVWDASIVSSA NNHFVIKGAGWNNTLQPGATVTFGGAGLVKAQPTNIVVTGS >gi|333603850|gb|AFDH01000119.1| GENE 7 6615 - 7049 498 144 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_5145 NR:ns ## KEGG: Pjdr2_5145 # Name: not_defined # Def: protein of unknown function DUF1094 # Organism: Paenibacillus # Pathway: not_defined # 1 144 1 144 144 226 72.0 3e-58 MVMSFDSYMRDMVQPMREDLTRIGVKELLTPEQAAETLENSEGTLLLVINSVCGCAAGQC RPGVAKALQNEVKPDHLYTVFAGQEKEATAKAREYLAPYPPSSPSIALFKDGQLVHFIQR HQIEDRSADMIAGDLTDAFEKYCK >gi|333603850|gb|AFDH01000119.1| GENE 8 7175 - 7300 222 41 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MAKSNNSKEQDIHEKENKQRKSTPSESGGDKKLNGPNFPAT >gi|333603850|gb|AFDH01000119.1| GENE 9 7574 - 8272 925 232 aa, chain - ## HITS:1 COG:BH1196 KEGG:ns NR:ns ## COG: BH1196 COG1842 # Protein_GI_number: 15613759 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Phage shock protein A (IM30), suppresses sigma54-dependent transcription # Organism: Bacillus halodurans # 3 182 2 179 220 96 42.0 3e-20 MGVFSRIKDMTKASIHEVLDKVEDPVVMLNQYIRDMEEEIAKAEVTVAKQIANERKLKQR LEESVRLSADREGRAAAALKDGEEQAARQALEEKLYHDEKIAEYTDLHEASKGHASELTQ QLHDMKDEYYKLRNKRNELVARTQLAKAKKQMAQVSYNGVIESGNASRGFQRIEEKIIQL EVEAEIARKPYVPASGYSSVSSYNPSDSAKQAKVDEQLQQLKNKIGGTKAEK >gi|333603850|gb|AFDH01000119.1| GENE 10 8275 - 8790 637 171 aa, chain - ## HITS:1 COG:BS_yvlC KEGG:ns NR:ns ## COG: BS_yvlC COG1983 # Protein_GI_number: 16080564 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Putative stress-responsive transcriptional regulator # Organism: Bacillus subtilis # 1 60 1 61 65 63 52.0 1e-10 MRKLYRSRTDKKVTGLCGGLAEVLNVDATLLRLLTVVAVFITSGSLILLYFIASFIVPKE PGFDPPRGPYGPGPYGGDSYGPYGNANNNNYGGSYGGNQAYNGWNGKEAKHGRQQSAAGS SFGAPKADNIDEMMKDIEKKAMQREIEELRGKLDRLEKQQKPTNNDSKGDV >gi|333603850|gb|AFDH01000119.1| GENE 11 8794 - 9456 775 220 aa, chain - ## HITS:1 COG:BS_yvqH KEGG:ns NR:ns ## COG: BS_yvqH COG1842 # Protein_GI_number: 16080365 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Phage shock protein A (IM30), suppresses sigma54-dependent transcription # Organism: Bacillus subtilis # 3 212 2 210 225 80 30.0 2e-15 MSILKRIRDITVATLNERLEESEDPIRLIDQYLSAKREQLMQSERLYQQCTAHASSLRQQ YLSALETKEKREQQAALALKAGEENMARLILHEKLQAEERSDQYRGLYEQAGQSAAELEE ELQTMRADYQEVLDKRGYYMARMESARLQQRLNSRLGYGDGSSSPRMFYRMEEHVSDMEM QAHVLRDLRRTTREGGSENSNPALEKELEALRRKINREES >gi|333603850|gb|AFDH01000119.1| GENE 12 9492 - 9767 431 91 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|167464233|ref|ZP_02329322.1| ## NR: gi|167464233|ref|ZP_02329322.1| hypothetical protein Plarl_17029 [Paenibacillus larvae subsp. larvae BRL-230010] # 2 90 6 94 96 79 61.0 1e-13 MGLAIVLIAFGAWLILGKLGIHLGPIMSYLIPIGMIVVGYFGIQRGSKLGWVIALLGIFA LLGKMTTLFIILIAVAMIAFGVSMLKGTSNS >gi|333603850|gb|AFDH01000119.1| GENE 13 10012 - 11079 736 355 aa, chain + ## HITS:1 COG:no KEGG:BcerKBAB4_0726 NR:ns ## KEGG: BcerKBAB4_0726 # Name: not_defined # Def: metallophosphoesterase # Organism: B.weihenstephanensis # Pathway: not_defined # 67 346 48 312 820 121 31.0 5e-26 MKHFQRAAAVFLACCTAVCLLPPGRQTVPAAEALLAAAPPQHSGQQAGAGADDGRTVSPV ETPRALLTFSVLSDIHIEAHDKLSQDLLRTALLDHAALAPDSGMMVLNGDLTDGNPADYN ALAAVLNAMPHPPLHATMGNHEYYRMWRTPFGSIDTSRLNPFWSTREAVGLFTRCFGYEK PYHAAEMAGYTFIFLSGEGYRDVVKDAREDAYLSAEQMNWLGRRLSEASRTHPGRPVFVF LHQPLVHTLKGSGQERGVTDYKAFRRVLTEYPQAVLFSGHSHYDWSLGGQAVPTGFLSVG SSSVRKVLDFHQKPVKPAKSESLLVQVYPDKLVIRVREHYSRSWIGTYVHELPPS >gi|333603850|gb|AFDH01000119.1| GENE 14 11314 - 12588 1463 424 aa, chain + ## HITS:1 COG:BH3279 KEGG:ns NR:ns ## COG: BH3279 COG2081 # Protein_GI_number: 15615841 # Func_class: R General function prediction only # Function: Predicted flavoproteins # Organism: Bacillus halodurans # 2 416 1 415 422 535 62.0 1e-151 MIYDVIIIGGGSAGLMAGVAASADGASVLLLDKGDKLGRKLGISGGGRCNVTNNKEMDEL IRHIPGNGRFLYSAFSHFNNQDIIAFFENLGIRLKEEDNGRMFPVSDKAKTVVDTLIRQV RGQGVTIRTHCSVDRVLYENGRTTGVRLQTGETLRGKCVIVASGGKSVPHTGSTGDGYAW AQAAGHTITELFPTEVPLTSAEPFIKSRELQGLSLRNAALTVWNAKGKKLITHQGDMIFT HFGISGPISLRCSQFVVKELRKSQKDSVELTIDLFPDRSTEEVYEQTLALAAAEPKRAIK NVLKGAVSERLIPLLLQKAELDEALTHANLPKQNWMELSKLLKAFPLRVNGTLSIEEAFV TGGGVNLKEIDPKTMESKLTEGLFFCGEVLDIHGYTGGYNITAAFATGYTAGKHAAMRAE EVTV >gi|333603850|gb|AFDH01000119.1| GENE 15 13120 - 13602 519 160 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_5151 NR:ns ## KEGG: Pjdr2_5151 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 1 116 1 106 131 61 37.0 9e-09 MSDTPIFFEFPQERDMRLAYDTLFELGYRPGVNASEGKSTLHIHVEGQDLASAMQIAQAH AGELIDAPPAAEVSYSEPEAYAAAYDLDTIRIPAHLIQDPEEDAPEGTLAAVHNGDGIGS VPDAYTDAAGAGADGSYEEPQRQFDPSDDDLDRFSAGIHL >gi|333603850|gb|AFDH01000119.1| GENE 16 13712 - 14926 1448 404 aa, chain - ## HITS:1 COG:BS_ythQ KEGG:ns NR:ns ## COG: BS_ythQ COG4473 # Protein_GI_number: 16080052 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Predicted ABC-type exoprotein transport system, permease component # Organism: Bacillus subtilis # 1 267 1 272 385 79 27.0 9e-15 MTPAKLFKRRLLDDWTYQYRILRTAVDWTVAVYLIVPALIFAFIYYSAWWRTPPEWFGYI PASLVAVFLYLFAWSGTVRFFIEEADQLFLVRSEGWMPAIKRRGLLYSLALQALTTALLA GALLPLLRAEGSGGALKLAALFLAVYAAKVNLGLLRQLAALAWAGWKRVAASIVLFAAGF LIYWACVQLILAGAAAGYLAGPLLLAAAVPLSRRRLRAAGAFYPDVQREREARLKLASLM LRGIVEGKKPRQLRAPLVLGRSQRVVRGTGASAVLADSLVKSVLRRPGQWKLYAQLTAVL AFAAWRLPGPMHVVLWAVAAFVLAYWMKSVARETLGASFFRMFAWSEISKQEALRKASFA LAVPGLALIGLVAGGSISLPLGIAALVLSVPAAYAAAFLVTIWY >gi|333603850|gb|AFDH01000119.1| GENE 17 14945 - 15643 244 232 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 13 221 14 235 311 98 29 6e-20 MEKATVHIKKAGYGDSGAILRDIDFRILEGQLIGLIGPNGAGKSTTIKSMLGLLKDVEGN IEFADGRASVAYVPEQPVLYEELTLWEHMELAAAAYGLERPVFEERAEALLAQFKLSGDR HRLPVAFSKGMQQKVMLIIGFLNRPSLYIVDEPFIGLDPRATKDFLELLRKERERGAGIL MSTHVLDTAERICDSFLLLSEGRIVAQGTLDEVRQESGLPDGTLFDCFHALV >gi|333603850|gb|AFDH01000119.1| GENE 18 15776 - 16090 305 104 aa, chain + ## HITS:1 COG:no KEGG:Bache_0269 NR:ns ## KEGG: Bache_0269 # Name: not_defined # Def: hypothetical protein # Organism: B.helcogenes # Pathway: not_defined # 5 104 58 169 169 63 38.0 2e-09 MHNHNSSDIDSNKSAAMSAYLIFCLPLMVARHSRFAMYHANQGLLLLLYAVFAHLLLGLL PGVENLLMPPLDISVFALAFIGIRNAHDGRMRPLPLIGKLVLVR >gi|333603850|gb|AFDH01000119.1| GENE 19 16290 - 17243 1076 317 aa, chain + ## HITS:1 COG:MT3575 KEGG:ns NR:ns ## COG: MT3575 COG0119 # Protein_GI_number: 15843081 # Func_class: E Amino acid transport and metabolism # Function: Isopropylmalate/homocitrate/citramalate synthases # Organism: Mycobacterium tuberculosis CDC1551 # 3 244 5 242 334 99 28.0 7e-21 MKHDQHKILDCTIRDGGLVNNWDFSVEFVQDMYRGLNAAGVEYMEIGYKNSAKLLKSDNA GPWRFLNEDFLREVIPTKNDTKLSALVDIGRVDENDILPREQSQLDLIRVASYIKDVDKG LQLVQKFHDMGYETTLNIMALSHVMENELNEAFELINKSPVDVVYVVDSYGSMNHKDIDY MVNKFQRLLPEKKLGLHMHNNMQLAFSNTVIGAEKGVEFLDTSVFGMGRAAGNCTTELLV SYLKNPRYDVRPVLDLIERHMVAMREKVEWGYIIPYMVAGTLNEHPRVAMAVRNTADKDK YVEFYDKLTTPETIANN >gi|333603850|gb|AFDH01000119.1| GENE 20 17249 - 17374 78 41 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MDHYTKPKFLRKLTKVNGKRRILKFPETEKQKDPFPEERIF >gi|333603850|gb|AFDH01000119.1| GENE 21 17414 - 19510 1522 698 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSAKTKHDAFEEFYTRASNLGPAAGTFFNNKAYLFYTNGNLLDLVCMETYLNDDKQEMVR VVKSPNKKKGPLGIEYLTKVAYGCDGVSGGWIPALAACAHEGVLYLFYADQRGALHQMTS QDGIEWSSALTLSERMRLRTDSRFAAVSAGTRLYLIGSGADGKLALNWTDDGGQTWERTE AREQRPAKDGKADEIGIADVTHTAACSYRDPGGEVRIMVGYIQRSRDTKSVIPRKKEALK TWLLHHEENAPPRKVNEPQSIAEDENVSHFAVVPGSIENGCTGSVLQMFVSGKIEKDIKA RRYEYSVPSGRWSSPIPRNWGHMSTPSGHHVDAFQFFKPTDEGHIQSEIWFTQTFDGSGR KKHLGIGRYRSDRLTLTDTLTNWANDDHLTFLGVVESPPPHVLNGSELKDSICSFRFKWS KEEQAAVSAKYKFGASLNFSGKVPVVGLGGELKIAYERTRSVTSEMKSIKEFSIELYPSA TKKTAAHLYIRPNITRLTYKLADWQKNDLAVQLSLFSVSDLSIEARKGKSLNTFPKQPDP NRIENYVQRFTALPDYADKQLSFSMPVNWSESMKIEENFIKVSKTITSVSNSVSVECKPA GKAPGDVFSIGVGSSFMYTYEVNVSTQFSSQMGCTVRYPNPRPGETDDISEVKLLMYVFY PDKNKTDRCYWIPQETKNQYPWCVAWSVDELVRQGSGQ >gi|333603850|gb|AFDH01000119.1| GENE 22 20233 - 20445 88 70 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKAAPCVTKSGSKFTVSFQPFRAPLTALQKGWLKPRVQAGCPAPRRKAEEGDSQARRLYV KNVRTPPYLP >gi|333603850|gb|AFDH01000119.1| GENE 23 20518 - 20877 322 119 aa, chain + ## HITS:1 COG:BS_ymaA KEGG:ns NR:ns ## COG: BS_ymaA COG1780 # Protein_GI_number: 16078800 # Func_class: F Nucleotide transport and metabolism # Function: Protein involved in ribonucleotide reduction # Organism: Bacillus subtilis # 3 116 4 118 130 127 54.0 7e-30 MLVVYDSRTGNVQRFINKLNLKAVRIEEDLTIQEPFVLVTYTTGFGQIPGKVLDFLKHHS SLLRGVAASGNQNWGQSFALSADRISSAYGVPVLAKFELSGTSSDVERFHKGVRHLEAY >gi|333603850|gb|AFDH01000119.1| GENE 24 20864 - 22948 2327 694 aa, chain + ## HITS:1 COG:SA0686 KEGG:ns NR:ns ## COG: SA0686 COG0209 # Protein_GI_number: 15926408 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, alpha subunit # Organism: Staphylococcus aureus N315 # 3 694 28 718 718 870 62.0 0 MKHIELNNELMIPGEDGFYRLEKDREALDAFLEEVQGQTVPFGSIKERYDYLIGEDFYEN VYEHYTLEQIEAIHETIRESGFKFQSYMAASKFYKDYALRTNDKKQVLESYEDRAAIVAL HLGEGDIGKAQRIAKAIIEQRVQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIQYVIG TCMQLSKIGGGVAVNMSKLRGRGEPIKGVEGAAKGIMPVMKLLEDAFSYADQMGQRRGSG AVYYSVFGWDIIEFLDCKKINADEKSRIQTLSIGLIVPQKFYELAEQNKPLHVFAPFSVY KEYGRHLDDMNIDDMYEELLANPNVKKKVVMSARDMLTKIAVIQLESGYPYIMNRSNANR GHALKDIGKVKMSNLCTEIFQLQETTEIGDYGQGDIIRRDISCNLASLNIVNVMETKSIR DSVHSGIEALTSVSDNTTVANAPGVVKANKELHSVGLGAMNLHGYLSKNRIAYESPEAKE FARAFFMAINFYSLEKSMEIARDRGITFADFERSEYAKGTYFAKYEEKDYRPESDKVKAL FEGMNLPSPEDWKVLKEQVMKHGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIETRTY ANSTTYYPMPYLSKENMFFYKSAYRMDPFKIIDLIAEIQEHVDQGISTVLHVNSDISTRE LARNYLYAAKKGLKSLYYTRTKRLTMEECLSCSV >gi|333603850|gb|AFDH01000119.1| GENE 25 23168 - 24127 1339 319 aa, chain + ## HITS:1 COG:BS_nrdF KEGG:ns NR:ns ## COG: BS_nrdF COG0208 # Protein_GI_number: 16078802 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, beta subunit # Organism: Bacillus subtilis # 3 317 7 323 329 360 60.0 2e-99 MKAVNWNKPDDDYTWSFWQQNVMQFWTEEEIPLSDDKMVWIEMSPDEQDVYKKVLGGLTL LDTLQGGVGMPRLVEHMDGLQRKAVLSFMGMMEQIHAKSYSSIFTTLASNEEIDGIFRWV EENGRLQQKADLINRYYNSIQSDKDLYLAMTASVYLESYLFYSGFFYPLYLAGQGKMTNS GEIIDLILRDESIHGLYVGTLAQELFASLSEADQQEAAEEQIKLLLELYEIEKLYTEELY TPLGLQDDVLRYVRYNANKALMNLGRDPYFPEEPVHPVVLNGIRTQTKQHDFFSKKGNGY VRALRVEPLSDDDFSFEGL >gi|333603850|gb|AFDH01000119.1| GENE 26 24404 - 24811 379 135 aa, chain - ## HITS:1 COG:MA0918 KEGG:ns NR:ns ## COG: MA0918 COG0454 # Protein_GI_number: 20089796 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Methanosarcina acetivorans str.C2A # 10 133 16 139 146 109 41.0 1e-24 MTFKIRTDLPAKADYYELFQSTGWNGDRIWTEDMLHEAVRNSWYVVTVYKGDRLVASGRM VSDGVIQCIICEMMVLPAYRNQGLGSKIMDRLLDYCKSKGIRWVQLACAKGKQGFYERYG FNERPAGAPGMGLFL >gi|333603850|gb|AFDH01000119.1| GENE 27 25124 - 26497 1806 457 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKKIIATLTASAFVFGMMPAAWAADTHSPYYEVKDGTLVQLHATTDKPLDKDEVRLPALE KVSKLTLDNVLERTLNNSYNMKLLYLKTAALGNKSSDLKDQSDNLYGGSFEGYKLPASPQ DYMTPEAMKKYQIDPTKATPDSFFWIGPVVETNTVLNKVIEGQGQMVNGINQILQAQREQ MKTTSHQLDTDMWNNLLQTDEAIEGIKLQVTAQYVQLLGSKKQIVLMHEYKGVAEKEMKR AQVLSDAGLASPEDVETARKAVNKIGDDIQTLENNYRLGLVQLCFDIGVEYSPDLLLEEP AAVSANVEPVVKKDTETLLANSFKLKMDHNGIDEAIWQQQNTVTKNTYGGQYQSVNTGIA YQKQEQTKAELVKKIYATYSDAENAYQTVLNEQRNLKDAQADVAKMKIRYENGFVSKHDF DKFSFKLQQAQTTLEGARLKYFALVRKAEAMDRGFIS >gi|333603850|gb|AFDH01000119.1| GENE 28 26670 - 27887 1343 405 aa, chain - ## HITS:1 COG:CAC3268 KEGG:ns NR:ns ## COG: CAC3268 COG0842 # Protein_GI_number: 15896513 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Clostridium acetobutylicum # 7 366 8 366 378 186 31.0 7e-47 MPLKVGSVIAEEWRQIFKDRRLMAILFLVPILYTTLFGSIYMQHKVTEMQTVVFDEDNSQ LSRQIVQAFDQSETFQVVNAYHSEAEVTEAISRGEAKVGVIIPKEFEARIKHGDVQPVMT LIDGANMMISNSATRAANEIVTTYSYGVSGKKLQQQGLQDEQVSSTFSAVPFRYRVLYNP TFNYSDFMIFGLAGAILQQVLLLGIALTITRDKEKGIWSRFAEWKKMPWRLAYAKSVPYF IVGMLNAVVVFTIMLFGFDLPMRGQILMALLLSACFNFAVLGIGYFISLFSSAQLGSTQI AMLIAVPSFMLSGYTWPFEAMPKALSILGHMLPLTYFLEGVRHVFVKGNGYDVIVKDCIA LVLTGLITYFAAFLLTRFAMFRKQKDEPASAGLPAVQPESSSLTV >gi|333603850|gb|AFDH01000119.1| GENE 29 27877 - 29166 1657 429 aa, chain - ## HITS:1 COG:alr1505 KEGG:ns NR:ns ## COG: alr1505 COG0845 # Protein_GI_number: 17228998 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-fusion protein # Organism: Nostoc sp. PCC 7120 # 49 425 92 428 504 80 25.0 7e-15 MKFVRPVVYVVMAGLIGGGTFLLSSKEAMSSTQNRPANLPTAYIEANQVAASFKAGGRVT EILVKEGDTVKKGQVLARIQSQEIEAKVAQAKAAVALSQGKIAEAKGAEATAQAKKQQGQ EAVTLTAETAEKQVKQAEAVVKAAQTKVDALKNGARPEEKKQAEIQLNATKEVFQTAEES YNRVKKMKEEGLVAQTDVDKAKVSYEEAKAKYEVAQQQYALAQQGPRVEEIQAAEAQLEQ AKAAVELAKANMDQVKIRQGDVNAAQASIQQAQGAVKSAQSGQQQAQAAQSEAETYLSYT ELLAPSDGIIISQSAQLGEMVGSGFPVFTMETSAETKWARFYLKETDAAGLKAGDTVTVK VTANGDAVTGKVSTVAPAADFAVKKATQNASDTDIRSFGVKVELPQLPESVLTGMTVQWE GKAGDTVAP >gi|333603850|gb|AFDH01000119.1| GENE 30 29233 - 29802 681 189 aa, chain - ## HITS:1 COG:BS_yhgD KEGG:ns NR:ns ## COG: BS_yhgD COG1309 # Protein_GI_number: 16078079 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus subtilis # 4 188 5 189 191 182 45.0 2e-46 MDQRRDNILDAAKKSFALFGYKGTTVDQIAKIASVGKGTLYLYFETKEDLLNEIVKSLIA EMRKLADASISKGGTIMEKLHSATYSILVYRKEHELLLKLSQEVAQFGTPAAQHALREIE EGVIGYIKQHLEIAVANGTIKPCDPEITAFVLVRMYLVLLVDWERKHPPLTNEQISDLIQ LYMMDGIAL >gi|333603850|gb|AFDH01000119.1| GENE 31 30035 - 30736 825 233 aa, chain + ## HITS:1 COG:BS_ykoG KEGG:ns NR:ns ## COG: BS_ykoG COG0745 # Protein_GI_number: 16078390 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Bacillus subtilis # 5 227 6 228 228 258 62.0 6e-69 MSSKILLVEDESKIARVLQLELQHEGYEVSLAEDGREGLDMALAEPWDLILLDIMLPELS GLEVLRRLRQQSAVPVILLTARDAVPDRVSGLDQGANDYVTKPFAIEELLARIRNLLRLT TQQSQAENEQILQAEDILMNLKSREVTRMGKSVELTPKEFDLLQYLLQHKGEVKSREDII SDVWGYDFVGDTNIVDVYIRYLRQKLEKNFPGKLIHTIRGVGYLIKGSGSDES >gi|333603850|gb|AFDH01000119.1| GENE 32 30726 - 32093 1548 455 aa, chain + ## HITS:1 COG:BH0373 KEGG:ns NR:ns ## COG: BH0373 COG0642 # Protein_GI_number: 15612936 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Bacillus halodurans # 1 454 1 448 459 259 35.0 7e-69 MSLKLRFALLQTSLLFLILLGVNFFIYYLFIENNSRNETQNIERKAAKLLLQENVVQHPE YWENPFLLKDFLVANELIRLIGPDSMVQKEIYTDETLLQRPAKFITASGTISKLVSTDNG FCLYVQVPVMENERQIASLEIARKLVTLNDNVQVLFLALFYTTLGALVLSVIIGYIYASL VFNPIHRLAQTMESIERSGTFRRLEIKSTRKKDEIAQLGQTFNEMIGRLEQHFEQQKQFL ADASHELRTPLTIIESYARLLKRWASNDPQIREEAIEAILSESVRLREMTKSLLTLADSD ERQRTEWQEFELRPLVQATAASIQLTFDREVRLDLPEEDTPLKMKGDPEKIRQLLIILLD NAIKYSQLPIDIIVREQPRHLQISVVDKGIGIEKEDIPQLFNRFYRVDKARSRKNGGVGL GLAIAENIVKLHAGTLKIQSEPDIGTEVHVRLPKD >gi|333603850|gb|AFDH01000119.1| GENE 33 32322 - 32822 512 166 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_2268 NR:ns ## KEGG: Pjdr2_2268 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 11 166 4 145 149 63 27.0 4e-09 MNQPDTSKWLKWEHVEKFLDQPQKYIENIKWIEGFVRDVFDRTLPPQMNADVQQTQTQPK AQQKGKERTPSQEPRETVNGDTFETHTDVFVRLKIPKREDPRSLQVLVKTSHVKILGLTD EPRKLIKLPSPVLPKTAKATYKEGVLQIQVRRRKYKDSYHEAYIEY >gi|333603850|gb|AFDH01000119.1| GENE 34 32978 - 33205 59 75 aa, chain + ## HITS:1 COG:no KEGG:BPUM_1003 NR:ns ## KEGG: BPUM_1003 # Name: gerPA # Def: spore germination protein PA # Organism: B.pumilus # Pathway: not_defined # 1 66 1 66 73 66 59.0 3e-10 MPAIVGNVKILTVGPSSVVQFGDCLVISPNSSSKSYAGAGSFNTGDLPHVFNAVSATNTN DSDAVEAEANKTATA >gi|333603850|gb|AFDH01000119.1| GENE 35 33202 - 33624 214 140 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_2266 NR:ns ## KEGG: Pjdr2_2266 # Name: not_defined # Def: spore germination protein # Organism: Paenibacillus # Pathway: not_defined # 1 54 1 54 67 77 77.0 2e-13 MSWTIHQTITIHQLRVDAVSNSSVLQVGSAGSIRALSNQYNTGGFTGPAPEVGKGPLAGF GGAAGGGLPGAAEGGGSPGKAGSAGPGASGKPAAAPGSTGAAEAAPGAGGLLGPGPHLQP PFPPWMPWRPPVCRGPSRGS >gi|333603850|gb|AFDH01000119.1| GENE 36 33721 - 34419 590 232 aa, chain + ## HITS:1 COG:no KEGG:BL01319 NR:ns ## KEGG: BL01319 # Name: gerPC # Def: spore germination protein # Organism: B.licheniformis # Pathway: not_defined # 17 220 7 188 201 82 32.0 1e-14 MYGYGPGDPNLYAYQLQQMWTHIQRQEARIAKLEETTAAMRGEIEELKRQRGIHIDRIEY KFDQLKVEQLDGTLTIGVSPSTVDEIEDFSVNGMDASFPGNGTPSSDGFSPNESREPEQT GEDRPAADEGAANRHLHNFLDREAMEELIELAAKRHLNIGADESRRVMDDLRQQIEARVR QYASSPDLLHTGGQEPPGNATWKLIEKTKADIRAGIRNYLAQYQEGKGDGHP >gi|333603850|gb|AFDH01000119.1| GENE 37 34416 - 34598 172 60 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_2264 NR:ns ## KEGG: Pjdr2_2264 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 3 58 2 57 73 65 64.0 6e-10 MKVDFYVENKCLQVGSVYIIGVSSSSTFLIGDTDSITASSMFDTPPESVIVGPLVPLPHT >gi|333603850|gb|AFDH01000119.1| GENE 38 34602 - 35087 415 161 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_2454 NR:ns ## KEGG: GYMC10_2454 # Name: not_defined # Def: spore germination protein GerPE # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 3 118 2 118 139 85 36.0 5e-16 MARRLVWLTQAKVLSVSSSAVFQIGDNGGIHTRFRALALQREIPVYLGDEGSFEAYSIFA RPHPEVLFPPEAEKTTRNLGTIQVGPVKVLGVSASSVMQVGGSGPVSLQSRIKHIRQFRP IGPYTNPTGTIAYTGSGENLAAESGPPEPGAPPSNPYGLNR >gi|333603850|gb|AFDH01000119.1| GENE 39 35069 - 35767 954 232 aa, chain - ## HITS:1 COG:CAC0321 KEGG:ns NR:ns ## COG: CAC0321 COG0745 # Protein_GI_number: 15893613 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Clostridium acetobutylicum # 6 231 3 229 230 306 66.0 3e-83 MKEGGRILIVEDDVSIAELERDYLELDGFTVDMEHHGETGLQRALVERYDLILLDVMLPG TDGFAICERIRVERDIPILMVSAKKEDLDKIRGFSLGADDYIIKPFSPGELVARVKAHLS RYERLKGQQDQDKDEIRIRGLVINRASRRVYVNGKEIPFTTKEFDLLTHLAMNPNRVFSK DQLFDHLWGMDAIGDISTVTVHIRKLREKIEPNPSDPAYIETIWGAGYRFKP >gi|333603850|gb|AFDH01000119.1| GENE 40 35764 - 37242 1571 492 aa, chain - ## HITS:1 COG:CAC0317 KEGG:ns NR:ns ## COG: CAC0317 COG0642 # Protein_GI_number: 15893609 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Clostridium acetobutylicum # 1 484 1 496 498 361 40.0 1e-99 MSIRTRLLLSYIAMLVIPLILVGLTVTGLYFMLIQDLKREYHIDLTHGNPLKEVAQMEDD NYNKIRRAIAMDPGSAGDPGQWKQWEALVERVNMGLIIRKDEQILYISPTMNHPDVLNSL PAFSYYSGLTDSQLENNYYLLRHHDFTFPDGGKGSIFVGTHDTIGKKYFIKYGLIFLAVL IAVLVLTNGMMTYLMSRSLITPIRALQRSAEHIKEGRLDIEVRPASSDEIGELAVSFEEM RRRLKQSIELQMQYEENRKQLISNISHDLKTPVTAIKGYVEGIMDGVTNSQAKFDRYLQT VYSKTVDIDRMIDELFLYSKLDLRKLPFQFEEADLTAYLKDCVEDMQFDMEKKGIRLTLE LSSEEPLPVVIDREKLRRVLTNITENAQKYRDKPEGHIRIFVLERPEFVVIGVHDNGQGI PSDVLPHIFDRFYRGDPSRSSQTGGSGLGLAIAKQIVEEHGGTIWANSRFGEGTTIQFTV RKNREEKGRMAT >gi|333603850|gb|AFDH01000119.1| GENE 41 37466 - 38206 638 246 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|167461935|ref|ZP_02327024.1| ## NR: gi|167461935|ref|ZP_02327024.1| hypothetical protein Plarl_05165 [Paenibacillus larvae subsp. larvae BRL-230010] # 1 244 1 243 243 232 43.0 2e-59 MTFTKLVDVFVPVTDLKRSAPWYEQVLGLRLLGRDDRHARLSFLEGTCLTLVQQADLNRY DEAPFNVNVYDAEKAYRIMIGSGVEIAEEPAPFHHMQCFKISDPDGNPIGIAGWREEAYA GTEGAIRLGGAFLPVRDLQRSVEWYESKLGALVLHRFAYKLPALDKEVEAVSFENINVCL FETPRFSALAHMAFTIGSTDPRNDFETLRSGGIKLSALTREFNRDRFGLLDPDENEIGVI GILQVN >gi|333603850|gb|AFDH01000119.1| GENE 42 38326 - 39303 1121 325 aa, chain - ## HITS:1 COG:SP0636 KEGG:ns NR:ns ## COG: SP0636 COG4586 # Protein_GI_number: 15900542 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, ATPase component # Organism: Streptococcus pneumoniae TIGR4 # 1 325 3 326 330 262 42.0 7e-70 MITATNLNKTFRTPVVRQGRMAGLRSLLSREYRSKTAVNDVNFTIGRGDFVGFIGPNGAG KSTTIKMLTGILHPTSGEVRISGLSPQRDRRRVVAKLGVVFGQRSQLWWDLPVRDSYEIL AAMYRVREEDLKRKLAELGELLGLGEFMDTPVRKLSLGQRMRADLAAAMLHDPDILFLDE PTIGLDVAAKQSIRGFLHTLNKEAGKTVLLTTHDMDDIEQLCERVIVINGGTIGYDGTVE GMRQRIGLPTIMTIRYRGACGFASGEADKEYPFRVTAAEKEKLVLEFNRTDIGPMEVLQL AGGWGEIADVHMQEPDFEDIVHRVY >gi|333603850|gb|AFDH01000119.1| GENE 43 39335 - 40255 996 306 aa, chain - ## HITS:1 COG:BH0021 KEGG:ns NR:ns ## COG: BH0021 COG1686 # Protein_GI_number: 15612584 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanyl-D-alanine carboxypeptidase # Organism: Bacillus halodurans # 1 291 1 301 444 188 38.0 1e-47 MKRIKRKVLLLAVLAAAGIWLWNERKHAEPDIQARSALLMEAGSGRVIYERNAEESLPPA SMSKMMTELIVYEEVKAGRASWEDRVTTSPYASEVTGAQIGLETGEKLALKDMLAAMAIV SANDAAVAVAEHLAGTEDEFVVKMNAKAKEIGLSDKTVFANASGLTRADLGPFAPKKNTG ETLLTAKDAAKLAVYLIREHPGILELTAKADYTLPGRFGTLKTTNRMLPFTKDSFSYAGV DGLKTGFTDQAGYCFTGTAVRDGKRLVSVVMGTETGEKRFEETRKLFNYGYGTSRSLTEW IKDVMR >gi|333603850|gb|AFDH01000119.1| GENE 44 40473 - 41267 1031 264 aa, chain - ## HITS:1 COG:SP0638 KEGG:ns NR:ns ## COG: SP0638 COG3694 # Protein_GI_number: 15900544 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 1 264 1 261 261 89 23.0 6e-18 MRNGLRMYVLLIRASMRSRMQYKFNFIFSSLMAALVNVAEFLMVALVLDRFGSVKGWSLH EVAYLYAVILLSKAIYRSLASDVHHLEKYLMSGDMDALLIRPLPVLFVLMTQNFRLLVGE FGQGLLVLAYAMTHMLRVGQIGWEAIPLTVIAIGSGALILFAIGLATASAGFWLTRIEEL QNVTEDAARSAAQYPLDVYPGWLRYILLTFLPVGLANYVPASVIIRHEYGGWALAAVTVM AFVFVLLAGRLWKLGISRYQSTGT >gi|333603850|gb|AFDH01000119.1| GENE 45 41264 - 42040 652 258 aa, chain - ## HITS:1 COG:DR0203 KEGG:ns NR:ns ## COG: DR0203 COG4587 # Protein_GI_number: 15805239 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Deinococcus radiodurans # 2 258 18 275 275 75 28.0 1e-13 MLFSVLARKAYARNLQYRGAHMIHNVSSFMFGFVYVSLWAGIGESHSLGEYGVQGMTAYI AFNQASLWLVLFITNGLGMEQSVRTGQIALDLMRPVPLFLHKMYREWGQIAYQFVYKFLP IYILYFFLFSIPVPGKLSVYGWTALSLLLAAYISICMNYLIGAAAMWTTESRWLYWVNYA FSMLLSGFFIPLEWLPAWLRQLSWLTPYPYLLYVPVSLFTERTTPAALPAALFWCVLFTG LCMMATGAMRKKLEVQGG >gi|333603850|gb|AFDH01000119.1| GENE 46 42246 - 45362 2679 1038 aa, chain + ## HITS:1 COG:alr2279_3 KEGG:ns NR:ns ## COG: alr2279_3 COG0642 # Protein_GI_number: 17229771 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Nostoc sp. PCC 7120 # 640 874 1 239 260 248 53.0 5e-65 MEITKDAKLKKAISEGGIYKSLFQHHPDAIYVMDTHGRYLDANPAAERISGYSREEFIQL GRETLFSEHAEQGRTHFERALRGETPHFEVEFCRKDGAVFHVETTYIPIVVDGEIVGVYG MGREITEQKAVLSKLEECETLYNLISENAGDIITFTNPQGICEYVSPSIYKLLGYEPGEI VGTPIGDYYITEEIKPGCSENPSEDADLLTGRFRHKEGHYLWFETTVKAVRSAEGKVEKI LGIGRDITERKKMEERIRASEKQYRLISENSLDFISRHSADEQAVYLYASPACRSLLGYE PEELIGTSAYDYFHPDDVFLVTEYLLANLAEVGIYTVSYRIRRKNGEYIWFESSSRYTYD ENSGTVQEIISISRDITERKAAENKLKVSEQRYKSLFDYNPSSVYSFDLEGNHVSLNANL ARMTGFSRKELLHHSFTSLIEPSLLEKTLAHFHNAKRGIPQNYETTLICKDASLIDVSVT NVPIIVDDEIVGVYGIANDITESKKYVKEIEHLSYQHSLILSSVSEGIYGLDRDGNVMFV NPAGASMLAYSQEELIGVNIHDSIHHTKADGSDYPHEDCPIHATMLDGLSRLVQEEVFWR KDGSSFLVEYRVNPLYDKGEIMGAVVVFTDITDEREIIRAKEIAEQAARAKSEFLAMMSH EIRTPMNGIMGMTDLLLDTSLDDEQRDYADIIRESSDALLQILNDILDFSKIDAGKMTLI TEPFDLHAVVKSTLELFAPKAAEKKLELISRIEPDVPHLYMGDASRVRQVLVNLVGNALK FTDSGSIVVSVESLAAVNSGPVLLGFSVADTGVGIPAGKLDHLFQSFSQLHPVLNRKYGG TGLGLSICKRLVELMGGTISVESTEGAGSVFRFTLPNAQIKKEETGEEQALGEEQQEWMI SRLNSRPAPLKILVVEDHPVNRQLFIKFLEKLGYGADIAENGMEAVEAVTSTEYDLVFMD LQMPVMDGLQATRLIRQLLPSGQNPVIIAVTASVRPADKEKCLESGMQDFISKPILFDEV KRVFSYWGRKNDRENRDE >gi|333603850|gb|AFDH01000119.1| GENE 47 45447 - 46046 759 199 aa, chain + ## HITS:1 COG:no KEGG:PPE_02014 NR:ns ## KEGG: PPE_02014 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 3 172 11 186 194 94 44.0 2e-18 MTRKARGVFQSSGDALRAIEALKEHGYRDEDISVLAKHREEFGPYTERQKIAGKEDTKAE KGAIGGAAIGSAAGLIAGIGLMAVPGIGPILAAGPLAAALSGAAIGAGAGGVTGALVGAG IPEEEIENYHSRVDRGDILIVVDTPEDKWELVNEILRENRDDNVTADERTKSGVYEATPH AVHDNPDLLSNQEDVNFRR >gi|333603850|gb|AFDH01000119.1| GENE 48 46307 - 46613 275 102 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MMKSIQQKSPLTQVRNGRTPDSVAAGHPAATQPRSGVPARGLLWGIALLAALLLAGWSAA AKPTAADAGRSDLAALLAAADGVLAPDAAVTLRYAAPLPAAA Prediction of potential genes in microbial genomes Time: Sun Jul 17 10:39:47 2011 Seq name: gi|333603848|gb|AFDH01000120.1| Paenibacillus sp. HGF7 contig00178, whole genome shotgun sequence Length of sequence - 1381 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 1379 1664 ## COG2770 FOG: HAMP domain Predicted protein(s) >gi|333603848|gb|AFDH01000120.1| GENE 1 2 - 1379 1664 459 aa, chain + ## HITS:1 COG:alr1121_1 KEGG:ns NR:ns ## COG: alr1121_1 COG2770 # Protein_GI_number: 17228616 # Func_class: T Signal transduction mechanisms # Function: FOG: HAMP domain # Organism: Nostoc sp. PCC 7120 # 1 459 342 800 1009 566 79.0 1e-161 SEVTRVAREVGTEGKLGGQADVKGVSGTWYDLTESVNDMASNLTNQVRNIAVVTTAVANG DLGKKITEEAQGEILELKNTINTMVDQLSTFGSEVTRVAREVGTEGILGGQADVKGVSGT WRDLTESVNYMATNLTNQVRNIAEVTTAVATGDLSKKIAVDAKGEILQLKSTINTMVDQL STFASEVTRVAREVSNDGKLGGRADVKGVSGTWKDLTDSVNYMASTLTDQVRNIAEVTTA VAKGDLSKQITVNATGEILELKNTINTMVDQLSTFASEVTRVAREVGTEGKLGGQANVKG VSGTWKDLTESVNDMASNLTNQVRNIAVVTTAVANGDLSKKITEDVQGEILELKNTINTM VDQLSTFASEVTRVAREVGTDGRLGGQAQVKGVAGTWKDLTESVNDMASNLTDQVRNIAD VTTAVAKGDLSLKITVDVKGEMLQLKSTINTMVDQLSNF Prediction of potential genes in microbial genomes Time: Sun Jul 17 10:39:52 2011 Seq name: gi|333603829|gb|AFDH01000121.1| Paenibacillus sp. HGF7 contig00230, whole genome shotgun sequence Length of sequence - 21751 bp Number of predicted genes - 19, with homology - 13 Number of transcription units - 13, operones - 4 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 394 - 456 64 ## - Prom 628 - 687 3.5 2 2 Op 1 3/0.000 - CDS 1682 - 3145 685 ## COG4219 Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component 3 2 Op 2 . - CDS 3142 - 3501 239 ## COG3682 Predicted transcriptional regulator - Prom 3538 - 3597 2.1 - Term 3582 - 3619 1.5 4 3 Op 1 . - CDS 3701 - 4084 199 ## Dtox_4041 hypothetical protein 5 3 Op 2 . - CDS 4081 - 4338 242 ## GWCH70_3018 hypothetical protein 6 3 Op 3 . - CDS 4412 - 4930 0 ## - Prom 5046 - 5105 2.4 - Term 5563 - 5613 5.0 7 4 Tu 1 . - CDS 5755 - 6117 385 ## lwe1734 hypothetical protein - Prom 6206 - 6265 6.3 - Term 6362 - 6403 -0.0 8 5 Op 1 . - CDS 6411 - 7337 339 ## 9 5 Op 2 . - CDS 7327 - 7866 323 ## COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog - Prom 8024 - 8083 3.5 - Term 8147 - 8198 8.0 10 6 Op 1 . - CDS 8332 - 9912 209 ## COG0778 Nitroreductase 11 6 Op 2 . - CDS 9966 - 11909 641 ## COG1944 Uncharacterized conserved protein 12 6 Op 3 . - CDS 11906 - 12967 221 ## GWCH70_0351 group-specific protein 13 7 Tu 1 . - CDS 14096 - 14293 68 ## - Prom 14392 - 14451 4.2 + Prom 13979 - 14038 4.3 14 8 Tu 1 . + CDS 14201 - 14317 98 ## + Term 14471 - 14511 -0.9 - Term 15637 - 15678 -0.9 15 9 Tu 1 . - CDS 15854 - 16138 129 ## GYMC10_2518 5'-nucleotidase (EC:3.1.3.5) - Prom 16228 - 16287 1.8 - Term 16611 - 16649 2.4 16 10 Tu 1 . - CDS 16894 - 17091 147 ## 17 11 Tu 1 . - CDS 17217 - 17561 89 ## Rvan_1483 hypothetical protein - Prom 17784 - 17843 3.8 + Prom 17941 - 18000 3.9 18 12 Tu 1 . + CDS 18047 - 18577 -8 ## pE33L466_0094 hypothetical protein + Term 18604 - 18657 8.1 19 13 Tu 1 . - CDS 19291 - 21750 1204 ## Pjdr2_0886 cell wall/surface repeat protein Predicted protein(s) >gi|333603829|gb|AFDH01000121.1| GENE 1 394 - 456 64 20 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MEKLESLKSLTLRRIQAKYY >gi|333603829|gb|AFDH01000121.1| GENE 2 1682 - 3145 685 487 aa, chain - ## HITS:1 COG:CAC3437 KEGG:ns NR:ns ## COG: CAC3437 COG4219 # Protein_GI_number: 15896678 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component # Organism: Clostridium acetobutylicum # 3 331 6 348 541 111 23.0 3e-24 MTSLFLTILNMSITASYVAIAVIITRFLLKRAPKIFSYLLWLAVAVRLVIPVSFTSSFSL LRLVQPQGRSGTGFMEFVPQDMGMQKHPVVDAGISGISHFINSTLPAAAPSSSANPMQII LWIASIIWVTGTFVLLLYSVLSYLKLRSRIQTATLVKDNIFETDRITTPFVCGFLKPRIY IPTGLSEHELSYILLHEETHIRRRDYWIKPVAFVILTVHWFNPLMWLSYALMSKDMEMSC DECVVDKMGDQIKGSYSTTLLSLAVRGSGLRTGSPLAFGEGNIKARIKNILAYRQPSSWI AIGSILVIAALVLGCAADPKPLSHSSQLSSQPLYSGYDMDMLMGNKTLYVGNHIKVGGLI GGMPRPSGLEGRGIELQTKAQPYGVTVYYVVNDDTVVLKDGTISGEAFYRNSVLLLSLID NVDWITYSIADPTSPNVDPAYSFTLTREKAEKMLGEDVRSYGKDQTSLRQLIDRLERLNF NETGSSV >gi|333603829|gb|AFDH01000121.1| GENE 3 3142 - 3501 239 119 aa, chain - ## HITS:1 COG:CAC3438 KEGG:ns NR:ns ## COG: CAC3438 COG3682 # Protein_GI_number: 15896679 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Clostridium acetobutylicum # 3 116 4 121 124 57 25.0 8e-09 MEPYKLFDAEYKFACLVWDHEPVNSTDLVKLSQTKLGWKKSTTYTVLRKLCERGILKNEG ATVTAIIKKTDAQKYESRTVVDKAFNGSLPQFLTAFLGEKKLSEKEAEELKRIIEEATR >gi|333603829|gb|AFDH01000121.1| GENE 4 3701 - 4084 199 127 aa, chain - ## HITS:1 COG:no KEGG:Dtox_4041 NR:ns ## KEGG: Dtox_4041 # Name: not_defined # Def: hypothetical protein # Organism: D.acetoxidans # Pathway: not_defined # 1 123 1 123 124 115 44.0 4e-25 MNIEVKYGLPFIEVVICYRGEQLHLKHVLLDTGSAGTIFSADVVDAIGVKVEPEDVLNKI RGVGGVEVVYSKYFDFVRTGEVSLEVFEVEIGEMNYGLEIDGILGFDFIQAAGLVINSKE LTVGAGV >gi|333603829|gb|AFDH01000121.1| GENE 5 4081 - 4338 242 85 aa, chain - ## HITS:1 COG:no KEGG:GWCH70_3018 NR:ns ## KEGG: GWCH70_3018 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_WCH70 # Pathway: not_defined # 1 83 1 84 86 67 38.0 2e-10 MRWEEVREQFPDEWVVCEALKSHSEDGYWLIDEVALIDRFDDSAVAMKRYYELHREQPYR EYGFFHTSREKLKLREKWAGVRGPR >gi|333603829|gb|AFDH01000121.1| GENE 6 4412 - 4930 0 172 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MEKITEDDVVRHYISLVTQECKDSYKGLELEDRIAEGALALIHAIRTYKVQYGCFEEYML LQLKFIMRDKNKEAWKARKLESLLSLDAPLFNNNSTFSALSNFLGSNSHDETVFEVNYFI ENLSIIEKRVVLHLIEDRDLIKISRHLGVSVSQIQHIIENIQNKVELYMNGY >gi|333603829|gb|AFDH01000121.1| GENE 7 5755 - 6117 385 120 aa, chain - ## HITS:1 COG:no KEGG:lwe1734 NR:ns ## KEGG: lwe1734 # Name: not_defined # Def: hypothetical protein # Organism: L.welshimeri # Pathway: not_defined # 3 118 72 187 189 120 51.0 2e-26 MNEKSWLVVQFPLKSVKGSQRDHWLKDKVTEYLGIFLSDAELGYVDGFDMGKCVSDPTAY ALNIFCVVTDEASGIALIKRVLREYRLDYTRIKIAAMPYENGDAYTLKYAYKKGVTDFSL >gi|333603829|gb|AFDH01000121.1| GENE 8 6411 - 7337 339 308 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNREKPNWAALVKASSVGRDVFTEQMKQTVLTRVEQNQRKKLKIPFIYMTAPLAGLLICL LLFPVFDSLPAVFQTMEKSIMGANGTSSEDIALHYEPAKELSAIPDTDKGIRGYTLSRLP LTSVHVKETVSIEGIGKYMDYIKSDEDSISYFGFQIFNHPGSTEDEFYEIGYGKMSEAKL QKSDAFGLMDLRLDGKCGPERRCVYWIALNQDEVVAYEQMDAWTIYEQDLDKDGVTEVVA STYAKEIYIYKNIKGQIQSVDVQAALKAGYGDAVTYNPDNQVFQITGKGGTKKYRYVTGA DMFRQVHE >gi|333603829|gb|AFDH01000121.1| GENE 9 7327 - 7866 323 179 aa, chain - ## HITS:1 COG:BS_sigW KEGG:ns NR:ns ## COG: BS_sigW COG1595 # Protein_GI_number: 16077241 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog # Organism: Bacillus subtilis # 1 175 4 187 187 79 27.0 3e-15 METEYLKYFQEVDNTELYNLMTQYGDDVWRYAYALTGNYEQSNDIAQEVFLKVHLKMSTF RGQSSFKTWLFSITRNIAINEMKSSYFRRILLFGNVKSTRTVQSAEVSYMANQAAADLRE IIMGLSRKLREVLILSLEHELTIQEIAELLHISEGTVKSRMSRARKEVEKRWGNLNHES >gi|333603829|gb|AFDH01000121.1| GENE 10 8332 - 9912 209 526 aa, chain - ## HITS:1 COG:all4884 KEGG:ns NR:ns ## COG: all4884 COG0778 # Protein_GI_number: 17232376 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Nostoc sp. PCC 7120 # 12 487 18 483 510 92 24.0 2e-18 MSLEAFLDNLHYDIDKTKPPDLAVDWEDGPLAYKLYRGLPVVPLSPEIPLTLEGGEAPMK PDLRRVGHFLWYVFGLTQLSQSVLASNSMVQTMGLLQMYRRFAPSGGALYPNELYVYLKI EELPAGVYHYDVAHHRLVLLREGNFDSYLAGAMGNRYDASACFGTVFVSTMFWKNFFKYN DFSYRLQGLDAGALIGQLLEVAKRFGFASGVYFRFLDRAVSYLLGISEQEESVYSVIPLS VEPAISWFANGNEGEGSVSAAELCRELPTVQHDHYVRSRRVNEFPMLIKMNEASLLESLR SIPRPGEKKIAHCGGHVVVLPYVKRLSYDLASVSRRRYSPDSDFRMSQVSQEQLALLLRE ATASFRYRNDLDGARENPVSRVSLYVCLYNVEGIPEGAYHYDSAAHALRSIRQGDHRLQL QEGMPSDNVNLFQVPLCFHIAGDKDHLATAMGYRGYRIQQMEAGMLLQRLLLAASAIGLG GHPLLGFDARLCDEIYKMTSQGLTSLIQIPIGSYRHSPRLTGGLHG >gi|333603829|gb|AFDH01000121.1| GENE 11 9966 - 11909 641 647 aa, chain - ## HITS:1 COG:MA0165 KEGG:ns NR:ns ## COG: MA0165 COG1944 # Protein_GI_number: 20089063 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Methanosarcina acetivorans str.C2A # 330 601 136 389 424 76 24.0 2e-13 MSAAVVIVGEGVLADCVCGELSTQFEVVRQSDFEAGVPEAADLVLVLNDAWNPYIHQKAE ELLQPAGIPWLRGFVSFGEGVIGPLVRPGTRGCSQCADTRRLMAGRERKEMLGLQQRLMT RGGVERDAWASRTGLLQVGHLLAVEARKVLQGQTVHSAERVFLINLKTLESTLHLVLPDP LCPVCSQLLDDSSAAADISLQPSPKISADSYRCRGMDELNKVLTQDYLDYRTGFLNGKMV DLKSPFADVSVNLPLLAEDVGTAGRTHSYAVSELTAILEGLERYCGLAPRSKRTVIRDSY RNLKDQAFDPVKVGEHTREQYAQPGAPYTPFNPDHPIDWVWGYSFLQERPILVPEQLAYY SMGCGHSFVFETSNGCALGGSLEEAIFYGILEVVERDSFLMTWYAQLPLPRLDLYSANDQ ELQLMIDRLRAVAGFDVHFFNSTMENGIPSVWGVAKNRKQTGVNLICAAGAHPDPVRAVK SAVHELAGMVQSLDEKLDTNRETYVRMFHDSSLVQQMEDHSLLYGLPQAQERLQFLLDDN RPLRTFEEEFKREARHADLTDDLKDLLKAFHRLNLDVIVVDVTAPEIMRNGLHCVKVLIP GMLPMTFGHHFTRLAGLERVLRVPVELGYAEKPLRLEDLNPHPHPFP >gi|333603829|gb|AFDH01000121.1| GENE 12 11906 - 12967 221 353 aa, chain - ## HITS:1 COG:no KEGG:GWCH70_0351 NR:ns ## KEGG: GWCH70_0351 # Name: not_defined # Def: group-specific protein # Organism: Geobacillus_WCH70 # Pathway: not_defined # 1 353 302 651 651 432 62.0 1e-120 MTGADDSEQNNRFFLLNLETLEGKWHSFLPHPLVTGLSAPEWIQDFDLQLKRRSNKSEHG LIPYFSRLTSAESGIFHVWEEGDLTQLPLSQCRVQAIDPLSEGPAGLLPDMICTDLTHEE ARREAGLAGIEAYVSRMAGLLVSMLPSHQGEEAGRIEPQEFIGIGAGEVVAEGICRGLQR CLEEVLGKQQASQLPLVSRVQLRTVEDKHCLFYLEALTTMKGAPVIALGEEVSGFPVVWV RTSDCWYRSVGLNVTLALRKALQQALLGAQNQPDGFKSQALEFSPVRLKEQAPLNLEIPA CEATSQPEVLQSALQVLNRNRKRLLVFDLAAEPFLKEEVAGVFGVVLREEGSR >gi|333603829|gb|AFDH01000121.1| GENE 13 14096 - 14293 68 65 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLLQLFQLFQVFQLFQLFQLFQLLQLLQVFQLSQLLQLSQLSPWRTIRYLLPISKYLCPI LLISL >gi|333603829|gb|AFDH01000121.1| GENE 14 14201 - 14317 98 38 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MEHLKQLEQLKQLEQLKQLKHLKQLKQLKKHKRADCSF >gi|333603829|gb|AFDH01000121.1| GENE 15 15854 - 16138 129 94 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_2518 NR:ns ## KEGG: GYMC10_2518 # Name: not_defined # Def: 5'-nucleotidase (EC:3.1.3.5) # Organism: Geobacillus_Y412MC10 # Pathway: Purine metabolism [PATH:gym00230]; Pyrimidine metabolism [PATH:gym00240]; Nicotinate and nicotinamide metabolism [PATH:gym00760]; Metabolic pathways [PATH:gym01100]; Biosynthesis of secondary metabolites [PATH:gym01110] # 1 94 113 206 310 108 53.0 7e-23 MNAFNASLFLSADPNDVRSAIEMGLPAAQVFPTGFIDDEKELELRIAFDFDGIIADDSAE GIYQALGMEGFHENERQKASEALPPGPLFKFLVK >gi|333603829|gb|AFDH01000121.1| GENE 16 16894 - 17091 147 65 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MQRILDETGAKESLEFICVLGKPMRGWEDSRKRVEDVAKLKSQDARVVLYSELIRNAMQA HIKVI >gi|333603829|gb|AFDH01000121.1| GENE 17 17217 - 17561 89 114 aa, chain - ## HITS:1 COG:no KEGG:Rvan_1483 NR:ns ## KEGG: Rvan_1483 # Name: not_defined # Def: hypothetical protein # Organism: R.vannielii # Pathway: not_defined # 16 114 417 515 664 95 47.0 6e-19 MTAESSEDRGTLSSHAVLAFESLRYRDNLDALDKISVENLQALSEVFGRLDDLEAFLYYQ IIKERIEVIRVLQDKVDANDLEKVIQEHFFNHLWLLDPSWERATDSDYMEERID >gi|333603829|gb|AFDH01000121.1| GENE 18 18047 - 18577 -8 176 aa, chain + ## HITS:1 COG:no KEGG:pE33L466_0094 NR:ns ## KEGG: pE33L466_0094 # Name: not_defined # Def: hypothetical protein # Organism: B.cereus_ZK # Pathway: not_defined # 62 170 3 109 117 67 35.0 2e-10 MGNLMRIEELDKLLKKSKLPFRYSLKDAEKILRDKYNTIEIDKEIVDDLKKDPLVNYDNI MKCYRVNDSKILSALFNDNERSMHAEIRQCNANEPISNSEITESELLWRDIQEGKFLQLV LESTDREYISSFTIQGLSEKMLDELIILKGIPPEEGYIGNPAYEFYLNVLHKNDLI >gi|333603829|gb|AFDH01000121.1| GENE 19 19291 - 21750 1204 819 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_0886 NR:ns ## KEGG: Pjdr2_0886 # Name: not_defined # Def: cell wall/surface repeat protein # Organism: Paenibacillus # Pathway: not_defined # 1 819 1525 2316 2316 711 62.0 0 SSPTLSAAASVSDGGVLSYQWYSNTANSTNSGTTIVGATSASYAAPTTPVGTTYYYVVVT NTNNSVSGTKTATATSSIAAVTVNIAPTYAIAPITNQTLTALTQGYAPGTQETKTIHVTN TGTSDISNLSATVSGNHASDFVITQPSATLINGAAPTSFTVKAKDGLPAGTYTATLTLSA THMTGVTFTVTQTVNLPNALANPQNLVATGGDREVTLNWDTVTGATYYNIYIATDSSQFS NASVVTVTSSTYHVQNLLNGTTYFFTVKAGNSGGMSGESNQANATPATVPAAPTNVSAVA GNGEATVTFTAPTDNGGSAITGYEVTASSGNVVVTGAASPIVITGLRNGTSYTFTVKAIN GVGKSVPSANTNAVIPQTPSSGSTGSNDTPSAPSTPTTPEKTNADVDILVNGKVENAGTV TRTQRNGQTLTTVFVDQKKLEDKLAAEGQNAVVAILVNHKSDVVVGSLNGQMVKNMEDKQ AVLEIKTDRATYTIPAQQININTLSEQVGKSVALQDIQVQIEIAAPTTDTVKVIENAAAK GTFTLVAPPLNFTVKGTYGDKTIEVSKFNAYVKRTIAIPDGVDPGKITTGIVVETDGTVR HVPTKIVVIGGKYYAQINSLTNSTYSLVWHPLEFRDVANHWAKQAVDDMGSRMVIDGTGN GMFSPDRDITRAEFAAVIVRGLGLKPENGATPFSDVKSTDWYSSVVNTAYAYDLISGFED GTFRPMDRITREQAMVVLSKAMTITRLKAERSVQSTDVILRPYGDTAAVSAWALSSVADN VQAGIVSGRSGNELAPKDYITRAEVSKIIQGLLQKSGLI Prediction of potential genes in microbial genomes Time: Sun Jul 17 10:41:06 2011 Seq name: gi|333603827|gb|AFDH01000122.1| Paenibacillus sp. HGF7 contig00050, whole genome shotgun sequence Length of sequence - 566 bp Number of predicted genes - 2, with homology - 0 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 149 - 364 70 ## 2 2 Tu 1 . + CDS 407 - 566 144 ## Predicted protein(s) >gi|333603827|gb|AFDH01000122.1| GENE 1 149 - 364 70 71 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVCRPENMRTYFSKRMVYVRIEKSLQGYADSIVSSMQHNWNKKPVAKLLLTWYINLADTD EPLKSKAGSES >gi|333603827|gb|AFDH01000122.1| GENE 2 407 - 566 144 53 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MENKTHSGNYKGTTHMNAENQDMEFANDTLELAEDKRAIRNKDKLLTQAPDAK Prediction of potential genes in microbial genomes Time: Sun Jul 17 10:41:19 2011 Seq name: gi|333603811|gb|AFDH01000123.1| Paenibacillus sp. HGF7 contig00098, whole genome shotgun sequence Length of sequence - 12604 bp Number of predicted genes - 15, with homology - 9 Number of transcription units - 11, operones - 2 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 229 - 288 5.1 1 1 Op 1 . + CDS 322 - 858 182 ## COG0563 Adenylate kinase and related kinases 2 1 Op 2 . + CDS 913 - 1278 443 ## BBR47_14300 hypothetical protein 3 2 Tu 1 . + CDS 1425 - 1790 104 ## 4 3 Tu 1 . + CDS 1915 - 2124 203 ## + Term 2259 - 2300 3.1 5 4 Tu 1 . + CDS 2753 - 3430 440 ## Pjdr2_5092 transcriptional regulator, MarR family + Prom 3443 - 3502 2.8 6 5 Op 1 . + CDS 3580 - 5028 1502 ## GYMC10_3608 hypothetical protein 7 5 Op 2 17/0.000 + CDS 5039 - 6115 1353 ## COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components 8 5 Op 3 24/0.000 + CDS 6395 - 7177 266 ## PROTEIN SUPPORTED gi|225088774|ref|YP_002660041.1| ribosomal protein S16 9 5 Op 4 . + CDS 7193 - 8050 938 ## COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component 10 6 Tu 1 . - CDS 8309 - 8566 82 ## - Prom 8644 - 8703 15.2 + Prom 8656 - 8715 8.5 11 7 Tu 1 . + CDS 8774 - 9934 39 ## gi|253575715|ref|ZP_04853050.1| predicted protein + Term 9973 - 10016 4.1 12 8 Tu 1 . + CDS 10439 - 10918 -109 ## + Term 10935 - 10975 1.1 + Prom 10957 - 11016 4.6 13 9 Tu 1 . + CDS 11072 - 11233 149 ## + Term 11401 - 11451 -0.5 - Term 11257 - 11297 5.0 14 10 Tu 1 . - CDS 11304 - 11399 74 ## - Prom 11469 - 11528 6.1 15 11 Tu 1 . + CDS 11750 - 12602 113 ## Plut_1824 hypothetical protein Predicted protein(s) >gi|333603811|gb|AFDH01000123.1| GENE 1 322 - 858 182 178 aa, chain + ## HITS:1 COG:lin1175 KEGG:ns NR:ns ## COG: lin1175 COG0563 # Protein_GI_number: 16800244 # Func_class: F Nucleotide transport and metabolism # Function: Adenylate kinase and related kinases # Organism: Listeria innocua # 3 157 2 155 176 107 37.0 2e-23 MKKIHIMGSVGSGKTTLARRLSAEWQLPFYELDNVVWKRTPSGDVRRTDEERDACLTEIV RADAWITEGAHCSGWVGSCLERADLIILVDTEYSTRLRRIITRFIRQKLGREKANYKPTW TIFRNMFRWNRQYETEGRAQIMELLEPYGVKLLVLKDTSQLDTLLLYEQGYQGKRENN >gi|333603811|gb|AFDH01000123.1| GENE 2 913 - 1278 443 121 aa, chain + ## HITS:1 COG:no KEGG:BBR47_14300 NR:ns ## KEGG: BBR47_14300 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 1 118 1 118 122 115 50.0 8e-25 MNITVDQRQNSKVAIISSENVVINSVNDALDLMADVHYNHGCDKVLLRKEQLTEDFFELR TKLAGDILQKYTNYSMKIAIVGEFGGYNSKSLNDFIYECNQGDKVFFKQTEAEALDALHG A >gi|333603811|gb|AFDH01000123.1| GENE 3 1425 - 1790 104 121 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MIKYNKLSLNELEDVVAFVESAWASYLKKFYEEKAFVFYMWGDYQIPAIRISVVSYYEGL GLPFGCIVNQVDDRKEVLIQYREKACFDGIPIRDSEDPNSVIDDEEENTYLLTVYARIIN G >gi|333603811|gb|AFDH01000123.1| GENE 4 1915 - 2124 203 69 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLINKDCMEIPWDLRSRIKQLDLSYYVSVVPYSKTTGWEDWGENYSYFKFESVEFPTVQS YSVNNRNAL >gi|333603811|gb|AFDH01000123.1| GENE 5 2753 - 3430 440 225 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_5092 NR:ns ## KEGG: Pjdr2_5092 # Name: not_defined # Def: transcriptional regulator, MarR family # Organism: Paenibacillus # Pathway: not_defined # 1 113 53 165 184 111 53.0 2e-23 MGELAEQLDFTSGAVTALCDKLEAGGFAVRKRSESDRRSVALDITDKGRELLRRNSGLSG HMIDILFGGFSQEELAHQIAFSRRLLEKLEGFAEAVLTYPGEDVEEVGETEADGPTEGVQ SPVAVEKADALQVSLLHSPAQPAVIAVSAGSPFKSARGAAADLELESARLSAKFGEESLA AAFTGNTASDTSSELRPESPTQPSADQPPASKPKTANHKKNFISY >gi|333603811|gb|AFDH01000123.1| GENE 6 3580 - 5028 1502 482 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_3608 NR:ns ## KEGG: GYMC10_3608 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 474 1 474 484 866 88.0 0 MGHPTIYPTGTTVYKPGKSWSGYTLYQAAETGALLIDMNGREVHLWKGLRGFPNKLLPGG YVFGSTAERDPKYGFQDEVNLVQVDWDGNIVWKFDRYQHIEDPGHEPQWMARQHHDYQRE GNPVGYYVPGQEPKVHSGNTIVLAHKNVNRPEISDKELLDDTILEVDWEGNVIWEWTTSD HFEELGFDEDARKALYNDPNTRFFGANAGDWMHINSASVLGPNKHYNAGDERFHPDNIIW DARETNIIAITDKKTGKIVWKLGPNYNTEETKHIGWIIGQHHAHLIPQGLPGAGNILIFD NGGWGGYGAPNPESPDGIKNARRDHSRILEINPITLEIEWQYTPTEAGFQAPLDSYRFYS PYISSAQRLPNGNTLITEGADGRIFEVTREHELVWEYISPYKNKRNSNMVYRAYRVPYEW VPQLELPEEVEIAPIDVADFRLPGAAARGAVTAVEVEGTVSYGEGALCVARTDEGQPEPE KG >gi|333603811|gb|AFDH01000123.1| GENE 7 5039 - 6115 1353 358 aa, chain + ## HITS:1 COG:BMEII0109 KEGG:ns NR:ns ## COG: BMEII0109 COG0715 # Protein_GI_number: 17988453 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components # Organism: Brucella melitensis # 27 304 4 266 319 68 29.0 1e-11 MRETADESKKAAGHVGLRQARHRHFARTLLALVLTATLLAVLAGCGKAAADPKQGGAAKL KLKIADISTNSIFRVAKSKGIFDKHGIDAELVSFATPAEGVNSLFIKQVDVAFGADFPLL NAVSKGDYAIFASSGTATDLSASEWKLFVRKDIKSAADLKGKKLSFSRGTFVPYLWDVYL GQNGVKLSEVKLIGQGGFDEAYVALKKGEIDGAWVYGAVLNEKFGALAEAHELTDMSKTP VRLGNGLIAPNELLKANKAGFVNFLKAIDEASAYAQAHQEESADIMYKEVKQPKEATLKD LPKNPWKIGFTDKAYNGYKEQKKYMVDNAIIEKDFDLKSKLYLDILREAFPDRVIEVK >gi|333603811|gb|AFDH01000123.1| GENE 8 6395 - 7177 266 260 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225088774|ref|YP_002660041.1| ribosomal protein S16 [gamma proteobacterium NOR5-3] # 1 234 1 230 312 107 32 6e-23 MSTEAAPKRNEIHIERLDKSYMQPSAGELHYIIQDVNLAVRGGEFFVLLGPSGCGKSTLL SLIAGFVSKTSGQVRVGDREVDRPGQDRAVVFQQADSSLFPWLTVRENVEFGLRMKRVPA AERREISDQYIALVGLKGHESKFPRELSGGMKQRVQLARVLSNDPAILLMDEPFGALDAM TRRTMQKELQRIWQETDKTVIFVTHDIQEALLLGGRIGIMSAGPSSNISHIYDVPLAYPR DLGSPEFYELYNRIQAHFDE >gi|333603811|gb|AFDH01000123.1| GENE 9 7193 - 8050 938 285 aa, chain + ## HITS:1 COG:BMEII0107 KEGG:ns NR:ns ## COG: BMEII0107 COG0600 # Protein_GI_number: 17988451 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type nitrate/sulfonate/bicarbonate transport system, permease component # Organism: Brucella melitensis # 37 271 10 243 246 142 36.0 8e-34 MNTNAITAKKTITSKPPITAASASKPLRKPWFKKTLLTLVFWIAGLLLWHGLSLVYGPEI LPGPILTAEGGYELLADGTLLQYIGISSYRVLLGWTLGSLIAIPVGLVIGKVDAIRAFAE PFLNFIRFIPPIAFITLFLVWFGIGETSKVVLILYATFFIVVLNTLTGVLAVEEDKIRSA RSMGASEWQIVLHVIIPSTVPYMFTGIRLAMGTSFMAIIGAEMIASNEGVGYLIWNSRLF FRTDWIFVGLICLGLMGFITDRAVALLGRKLLARYGVVGTVGGRR >gi|333603811|gb|AFDH01000123.1| GENE 10 8309 - 8566 82 85 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNKYTAYIFVSLLTILVPLIGLLYGLWDMTQPKVGPVGNGKIAGPSTVQLIVIISTILVG ILNLIIAIKMYFDHKKQSNFNHIFD >gi|333603811|gb|AFDH01000123.1| GENE 11 8774 - 9934 39 386 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|253575715|ref|ZP_04853050.1| ## NR: gi|253575715|ref|ZP_04853050.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14] predicted protein [Paenibacillus sp. oral taxon 786 str. D14] # 158 368 27 225 240 137 39.0 2e-30 MINKKSRKVVTVLSLVSLFCFTSLGPVSAESSQGASANLGKQEPISTVESYTIETYSDTL NAEGYFEKTGYEVVNAVTKIYVDEGRAIKSEVSSIEDFYDNQGNYIKTVIKNDKSANDFI TGKAKINNQNFVASSPLNDQSQLANVIKNNDTFEKETLDSSKEQAILKKLETNVSKLPKV QDKEVQGINLEQLNTIKQKISELQASKVTPKVSTCPSNSGGVESCGAYDNLYRHNIINGD FTAQVLGHAGEDSKYTRLHGNVGNNTAKASRLATFKQQINTYERYIVDDLEASTFWEVVG WASALASYVLLVQGFLTGPVGWVAVVSSYANALLVFIGFTSTSYATVSRLQISKNAAAQL NNAKTTHYNMLNLGDANYGSDYVSGF >gi|333603811|gb|AFDH01000123.1| GENE 12 10439 - 10918 -109 159 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MVYQPGRKIDFKPTYKGGDRMKILKYLFLSLNSLLSFYAGWWAYEMVLWLVWEQTISEGD LRAVQYWAGIAYLIILVPLYLLICSYVRSRIKPRFVRILLYPIGCAVIFVLPTLFIFAAF GGGNLFSAEAFLFYVFFISSGVVFGLGYALSMFLSLGKF >gi|333603811|gb|AFDH01000123.1| GENE 13 11072 - 11233 149 53 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKLMLSGIFVFLLIDFMGNTMGIKLYLLEAILPLLGIVLFVSGLFVKSGRDSR >gi|333603811|gb|AFDH01000123.1| GENE 14 11304 - 11399 74 31 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MEFKKTRKSCSFKVEPRIIIMLLLLIYKLFN >gi|333603811|gb|AFDH01000123.1| GENE 15 11750 - 12602 113 284 aa, chain + ## HITS:1 COG:no KEGG:Plut_1824 NR:ns ## KEGG: Plut_1824 # Name: not_defined # Def: hypothetical protein # Organism: P.luteolum # Pathway: not_defined # 2 284 68 351 627 202 35.0 1e-50 MYTAQQTEVPKKLKEDIFDCLNSQKTGIEVSDISEIILCHTSSNIPAGKTNNLYEVCSNK GILLKILGIDELASDIYNRFHGIARDFLGVPISTEQIFDLREFVMAYDSNGMAAPLSTTF QMRKQETVDILEKIEQSKVTILTGPAGVGKTRLALECCEKYATENKYRLFCIQSNRLPIY EDLKIFLNKPDNYLLFIDDGNQISGLNHVLQYLTKAKQGYEIKIVITVRDYAKYSIVQEA RNFTKPEVYGIGVFKDEEIKELLKENLQILNTNYLNKIVRIAEG Prediction of potential genes in microbial genomes Time: Sun Jul 17 10:42:41 2011 Seq name: gi|333603776|gb|AFDH01000124.1| Paenibacillus sp. HGF7 contig00108, whole genome shotgun sequence Length of sequence - 32696 bp Number of predicted genes - 31, with homology - 24 Number of transcription units - 21, operones - 7 average op.length - 2.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 519 482 ## COG1408 Predicted phosphohydrolases 2 2 Tu 1 . + CDS 672 - 854 231 ## + Term 976 - 1008 4.6 - Term 956 - 1005 12.1 3 3 Tu 1 . - CDS 1026 - 2333 1496 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase - Prom 2371 - 2430 9.2 + Prom 2133 - 2192 3.4 4 4 Tu 1 . + CDS 2299 - 2535 91 ## - Term 2414 - 2448 7.4 5 5 Op 1 . - CDS 2617 - 2943 389 ## 6 5 Op 2 . - CDS 3033 - 5279 1643 ## GYMC10_3817 hypothetical protein + Prom 5588 - 5647 3.2 7 6 Tu 1 . + CDS 5667 - 7370 946 ## COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs 8 7 Op 1 . + CDS 7479 - 8939 1549 ## COG0281 Malic enzyme 9 7 Op 2 . + CDS 8982 - 9461 377 ## PROTEIN SUPPORTED gi|15902812|ref|NP_358362.1| hypothetical protein spr0768 + Term 9533 - 9572 8.0 + Prom 9538 - 9597 6.3 10 8 Tu 1 . + CDS 9725 - 10126 353 ## - Term 10145 - 10182 3.6 11 9 Tu 1 . - CDS 10226 - 10483 202 ## - Prom 10503 - 10562 1.6 12 10 Tu 1 . + CDS 10681 - 11946 1356 ## Dfer_1270 L-alanine-DL-glutamate epimerase-like protein 13 11 Tu 1 . - CDS 11973 - 12644 717 ## BAA_3181 hypothetical protein - Prom 12670 - 12729 4.3 14 12 Tu 1 . - CDS 12789 - 13604 826 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) - Prom 13627 - 13686 1.7 + Prom 13579 - 13638 3.9 15 13 Op 1 . + CDS 13847 - 14416 277 ## COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 16 13 Op 2 . + CDS 14413 - 15870 763 ## 17 13 Op 3 . + CDS 15909 - 16034 168 ## + Term 16090 - 16147 12.2 - Term 16084 - 16123 9.1 18 14 Op 1 . - CDS 16136 - 17389 1356 ## COG0477 Permeases of the major facilitator superfamily 19 14 Op 2 . - CDS 17414 - 18205 825 ## COG0688 Phosphatidylserine decarboxylase - Prom 18390 - 18449 3.3 + Prom 18206 - 18265 3.1 20 15 Tu 1 . + CDS 18419 - 18721 358 ## gi|126652999|ref|ZP_01725139.1| group-specific protein + Prom 18724 - 18783 4.8 21 16 Op 1 10/0.000 + CDS 18839 - 19150 309 ## COG3162 Predicted membrane protein 22 16 Op 2 . + CDS 19187 - 20716 1899 ## COG4147 Predicted symporter + Term 20742 - 20794 20.4 - Term 20734 - 20778 14.5 23 17 Tu 1 . - CDS 20802 - 22256 1730 ## COG0833 Amino acid transporters + Prom 22559 - 22618 6.0 24 18 Tu 1 . + CDS 22772 - 23374 576 ## COG1954 Glycerol-3-phosphate responsive antiterminator (mRNA-binding) + Term 23569 - 23610 -0.1 + Prom 23420 - 23479 3.1 25 19 Op 1 . + CDS 23686 - 24513 916 ## COG0647 Predicted sugar phosphatases of the HAD superfamily 26 19 Op 2 35/0.000 + CDS 24607 - 25929 1707 ## COG1653 ABC-type sugar transport system, periplasmic component + Term 25950 - 25993 7.3 27 19 Op 3 38/0.000 + CDS 26021 - 26911 989 ## COG1175 ABC-type sugar transport systems, permease components 28 19 Op 4 . + CDS 26941 - 27849 1200 ## COG0395 ABC-type sugar transport system, permease component + Term 27894 - 27926 1.9 29 20 Op 1 1/0.333 + CDS 28285 - 28620 302 ## COG1376 Uncharacterized protein conserved in bacteria 30 20 Op 2 . + CDS 28637 - 29785 1005 ## COG0438 Glycosyltransferase + Term 29801 - 29836 3.0 + Prom 29821 - 29880 3.1 31 21 Tu 1 . + CDS 29908 - 32695 2318 ## PPE_03474 hypothetical protein Predicted protein(s) >gi|333603776|gb|AFDH01000124.1| GENE 1 1 - 519 482 172 aa, chain + ## HITS:1 COG:BS_ykoQ KEGG:ns NR:ns ## COG: BS_ykoQ COG1408 # Protein_GI_number: 16078402 # Func_class: R General function prediction only # Function: Predicted phosphohydrolases # Organism: Bacillus subtilis # 17 172 111 270 270 108 37.0 7e-24 KVEKVLKAVASRGIPAFAVLGNHDHRLDSAGMMKLNAILDEAGVALLNNRSADLGAFQFV GVDDLGTGHSRIGKAFRHTEAHKPVVVLTHDPNLVLRLKRPFTYLMAGHFHGMQFHVPFL FRFIRKGELAARGITKGLHETSYGRYYISKGIGQAGPNARFMIRSEVTVHEL >gi|333603776|gb|AFDH01000124.1| GENE 2 672 - 854 231 60 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MEEKSNCKIRRSGLVRELDGPSAVLEIEGRTVRVPAGKIADGTAAGTPVQWNGTLWIPFK >gi|333603776|gb|AFDH01000124.1| GENE 3 1026 - 2333 1496 435 aa, chain - ## HITS:1 COG:SA1749 KEGG:ns NR:ns ## COG: SA1749 COG0436 # Protein_GI_number: 15927510 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Staphylococcus aureus N315 # 1 429 1 427 428 384 44.0 1e-106 MNPLAKQLNETIEKENAYVYEMLSSLGKQIYFPKVGILSQSAEAKTKAGKYNATIGTAIE KGQPMHLKVIQDTLSAYDPKDLYEYAPPAGKPGLRTAWRKKMLEENPSLSNKTFGNPIVT NALTHGLSIAADLFVEAGDRVIIPDKNWENYELTFGIRRGAEIVTYPLYNEDNTFNSAGL RERLLAQKDKGKAFVVLNFPNNPTGYTPGAEEGRQIVSVIREAAEAGINVVAVTDDAYFA LFFENSLQESLFGQLADLHDRVLAVKVDGATKEEYVWGFRVGFITYAGKNEALLSALEQK TLGIIRATISSCSHPSQTFVLHALNSPEFNAQKQEKFEIMKGRANKVKALLDSGKYGDSW DYYPFNSGYFMCLKLKTVDAEALRQRLLEVYGVGTIALSETDLRVAFSCIDEENIEELFD LIYQGVRDLETVSAK >gi|333603776|gb|AFDH01000124.1| GENE 4 2299 - 2535 91 78 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MVSFNCLARGFIPLHPSGVMEIHFSHYYSTSYRNASLRYLKKTAPGIRKPFEPARTGNKA PEKRAESARETSSVLPKE >gi|333603776|gb|AFDH01000124.1| GENE 5 2617 - 2943 389 108 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MEANIELLRHLAQIHRPVDSDADDIWHYMILNMEEDALDPPALQAVASALESETNQGIGF REIQFERVLEHPELVEMEYYETNLVCPRESLAAHIRKILLLYDAGMEA >gi|333603776|gb|AFDH01000124.1| GENE 6 3033 - 5279 1643 748 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_3817 NR:ns ## KEGG: GYMC10_3817 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 27 450 16 437 689 233 35.0 2e-59 MPGLRLTIRTALDRFRTHWKKRAVQAPRLFAFYSILSWLGLAFLCLSLPFMKDSRTLLVQ ALASFYVLWQLWIVCRSKTVGWSAYTAFFIIGTWIVAPLNTLFIQLVFLPFDPAVYAVWN ASLVSPLTEELMKLAPLLLFLWGSRKATSLSLADFALIGGATGAGLQFLEEYWMRLHASL EPAGSAAVSPDSAMSWNLFHFLPSLEQGLASPWAGHTAATALCALGLGIAIRLRRVIGKA AYALPVFLLVWVAADHAVHNGTQATWLNGFHMTLGGGAYTKVLFIVLLIGAVAYDYADLN RMRKGLTLFRSENLIEPFRELYRSLSMLPEGAKRYVSLLRFYRIRRRLAFTLLYGKKDAK RSLGNLQDEMKTLNKAAVPVLLAAGFLLLSAAGWTGGLAAAAGSSPGGNACVSCLYAPTA AWWSGQSAAAKGVLLLGTAFLFTSFFPLWGAVSDTLAGDFKARRKHAGRLQPGEILPLLG AFTPRMAAAAGLRRLLDLLAGLEAGKKPSAPSEPAASSGAQEQPSAAQSAEAPSAAESAA DASFGADDTAGAAGAASSGTVPERRHRFTTERTRQTVHQGKQAYLPAGTRYGGGWTIRGL HNWNGFIDAVRRDRLTVVRTEELPENGIRRAVIRRQGTDPLTGETFTSLTYGKTFYPKHY NDSEIDRLGEDALNKAILHNRLQSQNDHLGRLQAYTFREEVVGPDGKIIGVQGRVLPDTE GNLTEIIDHFPYNHRQTVSFRRLSADQD >gi|333603776|gb|AFDH01000124.1| GENE 7 5667 - 7370 946 567 aa, chain + ## HITS:1 COG:mlr6174 KEGG:ns NR:ns ## COG: mlr6174 COG1167 # Protein_GI_number: 13475156 # Func_class: K Transcription; E Amino acid transport and metabolism # Function: Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs # Organism: Mesorhizobium loti # 107 562 1 486 489 204 33.0 5e-52 MKILIPFNHYAQLFPHKNTALYRALRESIVEGRLESGSKLPSSRELAEVYGISRGLVMQV YEMLMSEGYIEGKPGKGTFVAYRSDQAAGTGSSSDEPLLLSAWGRLLMEPGGGGARRREE GSGASAGNKEDSREQEYGGAERRPGGVPAGYAEASGVEPAEASGVKAADAGTARRTAALA SPPGRADETRSRSAASWSADPHTPAGPGSVVFELSGTDSSAFPRQAWNRCLHEQVRSAAF LESPLRDPQGDYSLRSAIALHLRRSRSIDADPDCVAIVNGSMQAIALTMQLLVGPGDEVV VESPGYSGAVRAAAAAGGVPVDAPVDGQGIIPQPWNARLLFVTPGRQFPTGAVLPLKRRQ ELLRWAKERGAVIIEDDYDTEFRYAGRPLEPLKALDREGRVLFVGTFSRTMYAGLRLGYA VLPPSLVEPFRRAKQHYEPLTTGMMEQRALAAFMNSGAYERHLRRMQRVYGEKAALLRSG LTALDPAFEWMPSEAGLHIFGWWKGGAEAYRRFAAECAERGVFWRDAGQHVRCGGRPAAC FGFGHLSREEIGRGIAVMTEVLRETFL >gi|333603776|gb|AFDH01000124.1| GENE 8 7479 - 8939 1549 486 aa, chain + ## HITS:1 COG:alr4596 KEGG:ns NR:ns ## COG: alr4596 COG0281 # Protein_GI_number: 17232088 # Func_class: C Energy production and conversion # Function: Malic enzyme # Organism: Nostoc sp. PCC 7120 # 9 465 11 462 463 442 52.0 1e-124 MAGFTGGTSIILRLEMMKERTNFGQIATTIGDAGGDVVAIDVNRSTKTVTVRDITVKVSD QNQTDAIVKALNELDGVKVINVSDQTFLLHLGGKIETTAKIPIKNRDDLSRVYTPGVANV CMAIHEDPSKAFSLTIKRNTVAVVSDGTAVLGLGNIGPEAAMPVMEGKAMLFKQFAGVDA FPICLNTQDPEEIISIVKAISPAFGGINLEDISSPRCFEIENRLIEELDIPVFHDDQHGT AVVLLAGMLNAVKVAGKKLEDCKVIVCGIGAAGIACTKILLAAGVKNVIGVDRQGALVRG ESYPYESWQWYAENTNPNEEKGHLSDVIEGADIFVGLSGPGVLKVEDVKKMAADPIVFAM ANPTPEIAPEEAEPYVRVMATGRSDYPNQINNVLCFPGLFRGLLDCRATRVNEQMKLAAA KAIASVVSEEELNELYIIPSVFNKQVVKKVREAVIAAAYETGVARRKSADIRSDEAAQSA DGAGML >gi|333603776|gb|AFDH01000124.1| GENE 9 8982 - 9461 377 159 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15902812|ref|NP_358362.1| hypothetical protein spr0768 [Streptococcus pneumoniae R6] # 11 155 6 150 165 149 49 2e-35 MFHTETYGGTREEQYTLVIAQLKALIEGETSRIANLANASALLGQFLRDINWVGFYLFEG EQLVLGPFQGLPACVRIPLGRGVCGTAAQKRETLVVEDVERFPGHIACDAASRSEIVVPL VKDGELLGVLDIDSPNLARFDETDRVMLERFVTELAAQL >gi|333603776|gb|AFDH01000124.1| GENE 10 9725 - 10126 353 133 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKTIEIRNPLLPLLAGSVFSAFMFATLMIQSWEQSAYLKPLTVLGLLFALFTAGYVLFDL IESRHVEFEGRVTDYNNGRLSLKTREGKVKRYKLPSREIPPGENEELLEPGNQVKATVTK RTGQLLTLEVLSG >gi|333603776|gb|AFDH01000124.1| GENE 11 10226 - 10483 202 85 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRTRPIYLFYGGMSLLMTVIYTVQFISGMPEVYKQRTGPLGNAEHFENLFSKGLPCAVLA LVMTFFYLILYLADRPKKEPDQEPG >gi|333603776|gb|AFDH01000124.1| GENE 12 10681 - 11946 1356 421 aa, chain + ## HITS:1 COG:no KEGG:Dfer_1270 NR:ns ## KEGG: Dfer_1270 # Name: not_defined # Def: L-alanine-DL-glutamate epimerase-like protein # Organism: D.fermentans # Pathway: not_defined # 2 419 45 463 468 337 39.0 7e-91 MLTITESNLRADREPLLHPFGFKGGQLTELWQPIVTLTSESGHKGTGVGVQSPLWSDANL MASLGEQGANELMYKFAEETVKSLSGASFGHPMELFEELYARPSQSWFARQGHPDVRPTY VLNALAAVDFAAWVLYAREREIYRFSDLLPGEYRSLGEQKTEAVAAVPAIAYGTDDGEIT GLLEQGCTVLKIKLGSGGDDMIDWDSRRLRHIHELTQAYLQTSPAPAEVSYYLDLNGRYA AKDDLLRLLEDADRSGSLPHVILVEEPFLDGREISVEDVPARIAGDESIQSESDARYYMD LGYGALALKPAAKSMSLSLKVAALAAERGVPCFCADLTANPLLVEWTRVLAAHLRPLPGM AYGLIESNGGQNYRGWDRLVSYHPAAGAGWTRTRGGLFELGEAFYAESGGVFRPSSYYEN R >gi|333603776|gb|AFDH01000124.1| GENE 13 11973 - 12644 717 223 aa, chain - ## HITS:1 COG:no KEGG:BAA_3181 NR:ns ## KEGG: BAA_3181 # Name: not_defined # Def: hypothetical protein # Organism: B.anthracis_A0248 # Pathway: not_defined # 1 219 1 220 225 192 43.0 1e-47 MKRKLGCYHAHYSNIEHIEKALGSYDIELVHFVDPGLDRIKNDSDFTEELALNKIKSTLD WLASCHVDAILITCTYFTAHLPENFSCPVPIIKIDDPLFHKILQLNRPSVLVFTNPSTVE GTMEQLHKFAAAAGQEIQVEPVLLENTFQLVMQGKKNDYIEAVSRGLFHAIEDHPRKTVF AAQLSMVPAAQRVGRESDAFLGNHLDALPGYLKDILSLEAVGR >gi|333603776|gb|AFDH01000124.1| GENE 14 12789 - 13604 826 271 aa, chain - ## HITS:1 COG:CAC2688 KEGG:ns NR:ns ## COG: CAC2688 COG0596 # Protein_GI_number: 15895946 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Clostridium acetobutylicum # 1 268 1 268 271 317 55.0 2e-86 MGIYIPAEQGINLYVEDLNPGGGGKTILFIHGWPLNHTIFEYQFDQLPKAGYRCIGVDLR GFGKSDRPWGGYSYDRMADDIRRVIETLRLEGIILAGFSMGGAVAIRYMARHGGFGVSKL ALFAPAAPLFTKRPDFPYGNSIEELNHLIEGTYTDRPKMLEDLGGRFFARYVSAPLQNWF HGIALSSSGHATAMGAALLRDEDLRPDLPKISVPTVIFQGAQDLICPYPLAQATQAGIKG SELVPFAYSGHGLFYCEMGKFNRELMRFAGS >gi|333603776|gb|AFDH01000124.1| GENE 15 13847 - 14416 277 189 aa, chain + ## HITS:1 COG:CAC1766 KEGG:ns NR:ns ## COG: CAC1766 COG1595 # Protein_GI_number: 15895043 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog # Organism: Clostridium acetobutylicum # 1 187 1 185 185 108 34.0 8e-24 MGKSEEWLARGMSEQDPAALEALMDLYASNIYGLVHRILQGAVSREDIEECVSDVFAAAW NRTSEYEPRRGTYKTWLLILAKYKALDYRRRLRPENRLGKMLAETELTAETDTEQIVLDR EMQEEFLALIDRLEDKDRIIFYRRYYYYESVEEIAAAMGLTAKAVENRLYRARKKLKEQM KTVRKEGIS >gi|333603776|gb|AFDH01000124.1| GENE 16 14413 - 15870 763 485 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKKREEREWFGLLDEITADLAENHIPDLDTAEFPLEKDPDRLTAIKQRTFEKIAVISPGT KTKTANCPSSGGELAPAVSPVRRTGTSRPKLLRRYALLAALAALLLTGGVLAGAQPEVAA QMRRVLQYLPGFAGVADSEKTEQRVEYVQPLPTTHKIGKGQLEIRGLSIGEKNSTVTLVG TGLPRASEVTLRNGLGEKYVFRRATMTGAEGGWTGFYSYEGRIEVTGNTTLIAEGRELPL KLVAPREVEQVTDLGPTAEHSGIRLTAVSAAVDDRKMKLTILPQLPGEVKINSYGFNSFY KEVPSAKFFNPGTGEEIPFTQDETFPNPSEIYWERGKESEGGAKLVIPALVLTRSYDQPA VIRLPVPERGNVEVNRTFDLFGFPVKVSRVERILKGAKIDGDGEAGEDSIRIWFELHGDE QAAETLYEFPPSLLNGGAVWHRNEQTDRMEWMLLSVQPGQKEYELKVSSLNSQVRGPWEF SVDQP >gi|333603776|gb|AFDH01000124.1| GENE 17 15909 - 16034 168 41 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKKVLLRIAKIAGTVAAIAIGAYYLLTLAAFVILALNEWTG >gi|333603776|gb|AFDH01000124.1| GENE 18 16136 - 17389 1356 417 aa, chain - ## HITS:1 COG:BS_yfnC KEGG:ns NR:ns ## COG: BS_yfnC COG0477 # Protein_GI_number: 16077799 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus subtilis # 24 415 18 409 409 373 52.0 1e-103 MASQATVNAGTARPSAGIPTSKPTVYKVLLAISLVHLFNDSIQSVIPAIYPILKDSMTLS YAQIGWISFYFNLTASIMQPVIGMYTDRKPKPYMLPLGMASTFLGMLLLAFAPSYAFVLL AVSLVGLGSAAFHPQGSKVAHLAAGSRKGLAQSIFQVGGNAGQSLAPLLTKWIFIPLGQF GSIWFTLVAGAAMLVQTFIARWYKGVIEAGAVTAKKTVQRAMDPTKRNKIATAIVVLVFL VFIRSWYSAAMTSYYAFYLRDVVGTTIDQAQIYIFLFLAAGALGTFFGGPLADRFGQRTV IFVSMCGAAPLAALIPYVGLGWATVLLVLTGFIVFSSFSVTVVYAQTLIPGKVGMVSGLI TGFAFGMGGIGALVLGNLIDAHGISLIMKLSSLLPILGILTLFLPSDRKLREWSAEV >gi|333603776|gb|AFDH01000124.1| GENE 19 17414 - 18205 825 263 aa, chain - ## HITS:1 COG:BH1311 KEGG:ns NR:ns ## COG: BH1311 COG0688 # Protein_GI_number: 15613874 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine decarboxylase # Organism: Bacillus halodurans # 2 257 3 256 259 194 43.0 1e-49 MKPLFRLMTELSSRKWISRMTGSFSKSPLSRSLIPWFAKSYGIPVEEAEKAIGEYATLNE FFTRRLKPGLRPVDTDPAALVSPVDAVITGYGPVEAGRMLSVKGQDYTVEELLNRSPRTI NYEKGFFMVLYLSPTDYHRIHSPVTGEILEKEHVPGKVYPVNEFGLRHMTRVLSRNERLI TVMEHEAGEIAVVKVGALNVSSIQYVEGLPSHLQAGDDLAYFEFGSTVVLVTENGILTPR SDLQVGSKVRMGERIGTLKQSTH >gi|333603776|gb|AFDH01000124.1| GENE 20 18419 - 18721 358 100 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|126652999|ref|ZP_01725139.1| ## NR: gi|126652999|ref|ZP_01725139.1| group-specific protein [Bacillus sp. B14905] group-specific protein [Bacillus sp. B14905] # 1 88 1 88 98 66 37.0 7e-10 MSGLVWGTVVVVPWLLVWLQNKVAGAKFIIDALAYAALVLFSGITGVTVAEILVNNTVFM TSVHKVFLNPLFLGSGGWLGLYALQLLIVEGIFSGRIKKR >gi|333603776|gb|AFDH01000124.1| GENE 21 18839 - 19150 309 103 aa, chain + ## HITS:1 COG:BS_ywcB KEGG:ns NR:ns ## COG: BS_ywcB COG3162 # Protein_GI_number: 16080874 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Bacillus subtilis # 9 103 5 99 102 104 58.0 5e-23 MKKRAKELNYTEIAQSSQFQTLLKRKRQFILPLSLFFFAFYFTLPILTSYTTVLNAPAFG SVSWAWVFAFAQFIMTWVLCILYSRRAAKFDVMVQQIRQQMKG >gi|333603776|gb|AFDH01000124.1| GENE 22 19187 - 20716 1899 509 aa, chain + ## HITS:1 COG:BS_ywcA KEGG:ns NR:ns ## COG: BS_ywcA COG4147 # Protein_GI_number: 16080875 # Func_class: R General function prediction only # Function: Predicted symporter # Organism: Bacillus subtilis # 20 505 25 510 516 642 78.0 0 MTAFWLFLGIVAITLLITYFAAKKTNSTDEFYTAGGGLTGWQNGLAIAGDYMSAASFLGI AGTIALAGFDGFFYSIGFLVAYLVVLYLVAEPLRNLGKYTVADMIAARFNEKKIRGVAAL NTITISTFYMIAQLVGAGALIKLLLGLDFTTSVLIVGLLMTVYVVFGGMTATSWVQIVKA VLLMGGTFILSIVVFSKFNFSVTEMFDQLKAVTPLKEKFLDPGNKYKIPLDTLSLNLALV LGTAGLPHILIRFFTVKDAPTARSSVVYATWIIGIFYVLTLFLGFGAAAFVGYDNIIAED KGGNMAAPLLARALGGDFFFAFIAAVAFATILAVVTGLVLSAASAFAHDFYSHIVRKGKA TESEQMKVARWASVGVSILSIILSLAASKLNVAFLVSVAFAIAASSNLPVILFTVFWRRF NTAGAVTGMLVGLVSSLVLVALSPSVWSPEAGKAIFVGTPLFPLTNPGIISIPLGFLGAI LGTVLSKKKSSDAKFDEIVVKANVGNINM >gi|333603776|gb|AFDH01000124.1| GENE 23 20802 - 22256 1730 484 aa, chain - ## HITS:1 COG:lin0791 KEGG:ns NR:ns ## COG: lin0791 COG0833 # Protein_GI_number: 16799865 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Listeria innocua # 12 483 8 484 486 620 66.0 1e-177 MKQPNSGSETTELKRGLKARHLTMISLGGSIGTGLFLASGGAIHSAGPGGALIAYAAIGI MVYFLMTSLGELSAYMPVSGSFSTYASRFVDPALGFALGWNYWFNWAITIAAELSAATLI MKFWLPDSPSILWSLLFLVLMFSLNYMSVRGYGESEYWFALIKIVTVIVFITVGILMIFG IIGGESVGFSNFTLGDAPVSGGFMAVLGVFMAAGFSFQGTELVGVAAGESENPRENVPKA IRTIFWRILLFYIFAIFIIGLLIPYTSDNLISGDVENIAISPFTLVFEKAGLAFAASVMN AVILTSVLSAGNSGMYASTRMIWTLAREGKAPRFLGRLDKRGVPVVALIATAAVGMFAFL ASMFGDGVVYIWLLNASGMCGFIAWLGIAVSHYRFRRAYKAQGRDLRDLPYLAKWFPFGP IFALVVCIVVILGQNYSAISESGVDWAGLIASYIGIPLFLIVWIAYKVKKKTKVLRLEEC RFDD >gi|333603776|gb|AFDH01000124.1| GENE 24 22772 - 23374 576 200 aa, chain + ## HITS:1 COG:TM1431 KEGG:ns NR:ns ## COG: TM1431 COG1954 # Protein_GI_number: 15644182 # Func_class: K Transcription # Function: Glycerol-3-phosphate responsive antiterminator (mRNA-binding) # Organism: Thermotoga maritima # 7 185 16 192 195 142 43.0 4e-34 MDKGIGNLGPRRIIAAVRHSEDLKLACASDLPVVFLLVGDLFTVQDYVKQVIDSGKKVFL HVDFIAGLGSDPIIIKYLAEKVRPTGIISTKTHLIKHAKKNGLAAVQRLFLIDSAALENG IANVQQSGPDAVEIMPGLIPRVITEVSERLSVPVIAGGLIHHHEEIETALQAGAAAVSMG SRALWVKETKRPRKDEAVVR >gi|333603776|gb|AFDH01000124.1| GENE 25 23686 - 24513 916 275 aa, chain + ## HITS:1 COG:VNG0719G KEGG:ns NR:ns ## COG: VNG0719G COG0647 # Protein_GI_number: 15789896 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted sugar phosphatases of the HAD superfamily # Organism: Halobacterium sp. NRC-1 # 10 258 29 277 288 159 40.0 5e-39 MRGLTEWNDAEAYFFDLDGTIFLGGRLLPGAAELLRSLEEAGKTVGFLTNTTTQTAADCG RRLRGLGLAVRDEQVVTAAAAAAAYLAEQAPQARVLAVGEEALIAELDARNIRVVRTPLE ATHVVVGMDRRFDYAKLHAASRALRSGAELIACNPDTFCPVEGDELPDTGAMTAAIEAAS GVRASVVAGKPSLHYAQVALRRARKTADRCVMVGDRLETDIRLGLASGMRTALVLTGAAT LEEVRAGTVMPDWIVPTLEAFTKPSDEEIFNIPIT >gi|333603776|gb|AFDH01000124.1| GENE 26 24607 - 25929 1707 440 aa, chain + ## HITS:1 COG:TM1120 KEGG:ns NR:ns ## COG: TM1120 COG1653 # Protein_GI_number: 15643877 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Thermotoga maritima # 44 440 19 433 436 207 33.0 3e-53 MRTIAKMSVLTLLTASLMAGCAKPQAETSASTTPGAGTDKPKEKTELTFYYPIAVGGPLT ATIEAMAADFTKENPDITVKPVYTGSYADTTVKTQAGVQGKTPPDVAVNLSTELYSLLDM NAIIPLDEFIAKEDKSWLSDFYPAFLANSQTGGKTYSVPFQRSTIVLYYNKDMFKEAGLD PNKPPTTWEEMAEYGKKLKKEGRWGLEIPVSGFAYWMMQTFSLQNGKNLMSEDGKKVFFD TKENAEGLQFWADMARKDKIMPEGVTEWATVPSDFIAGKTAMMYHTTGNLTNVKKNAKFD FGVTFLPQKKSYGSPTGGGNFYIFKDIDKKKQEAAWKFVKFMTEPERAAKWSIETGYVGV RKSAYETDVMKKYVAEFPPALVARDQLQYAAAELSTHNNGKVSKALSDQLQAVLTGAAEP AAALKKAQEEADKALAPFNK >gi|333603776|gb|AFDH01000124.1| GENE 27 26021 - 26911 989 296 aa, chain + ## HITS:1 COG:AGpA78 KEGG:ns NR:ns ## COG: AGpA78 COG1175 # Protein_GI_number: 16119287 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 15 295 42 321 323 175 34.0 9e-44 MTGKVAVWKENGFAWLLLLPSLVFLILFTFYPMLKTLILSFYQADLATPQPIFAGLDNYK HMAEDAVFWKVLRNNVWFALGTVPTAIALALVMAAFANKALRAKGFVRTAFFYPNMIPMI AIANVWLFIYTPQYGLLSRAMGWLGQSQAVNILGSQDTVMWAMIAMIVWKEAGYLMIFYL AGLQNIPKDLYESAEMDGVGRWTVFRKITFPLLMPTTLFVMIVALTNSFKLVDHLFIMTK GGPDNASNLLLFYIYDTAFSFWDQGLASALTMVMIVLLMALAALQYFGLDKNIHYR >gi|333603776|gb|AFDH01000124.1| GENE 28 26941 - 27849 1200 302 aa, chain + ## HITS:1 COG:lin0761 KEGG:ns NR:ns ## COG: lin0761 COG0395 # Protein_GI_number: 16799835 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Listeria innocua # 45 302 19 291 291 165 34.0 1e-40 MTSTTAGTAAPEASRRDGTAKPASARRRLFARGPLTLDFWLNALMFLVALVWIVPLVWML WTAFRPKDSVINPTLSWDFTLEHFRHVWSAAPFGLYYGNTLLITGGILVVQLLTVTMAAF AFARLNFKGKEFVFMLFLVQIMIPADVLVFPNYNVLKELSLLDTKLGIMLPYFASAFGIF LLRQMFKTIPPELDEAAVMEGCTKWQILWRIYVPLARPSYVAFALVSVSYHWNNFLWPLI VTNSVENRPLTVGLAIFAQSFETGAQWAEVSAATLIVIAPLLAGFLLFQRQFMNSFMQSG IK >gi|333603776|gb|AFDH01000124.1| GENE 29 28285 - 28620 302 111 aa, chain + ## HITS:1 COG:BS_ykuD KEGG:ns NR:ns ## COG: BS_ykuD COG1376 # Protein_GI_number: 16078468 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 110 54 163 164 124 54.0 4e-29 MAYRIDINTSTFVLTLSDDGNTVNTYPVGVGKVGTSTPEGTFTIVNKEPNPGGPFGVLWM GLSKKHYGIHGTNDPSSIGKRSSHGCIRMQNKDVLALSRVVPIGTVVRIHP >gi|333603776|gb|AFDH01000124.1| GENE 30 28637 - 29785 1005 382 aa, chain + ## HITS:1 COG:BS_ytxN KEGG:ns NR:ns ## COG: BS_ytxN COG0438 # Protein_GI_number: 16080143 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Bacillus subtilis # 6 379 3 374 377 179 30.0 5e-45 MNISSIAIVSPGSFAVPSGTSSSVEHVVERLADRLSEAAQVTVLGRRTRRRPAREQIGGV TYVRPSYKSGLSYIEAVYRKLKPMKPDLIQVENRPRFVRYLRKRMKRATICLGLQSITFI SKPHIGRKEVAECLRCADLIFVNSEYLRQEVIRRAPSVANKVMVNPLGADPSIFAPRMFH EEARQEMLASLGLSGRKVIVFAGRLMPMKGVEQLLRAMPAVFAAHPDAALLVIGGAGYGS TRQTAYVRKLKRLAAPYPDHIRFIPYVSHDAIPAWFRLADVVAVPSMRIEAFGLVNVEAM SSGVPVVATRVGGIPEIVLHETTGLLVPLQSVEAELAQAISRLLADDELRRQMGQRCLER VAELYTWEKMAERQRAFYDLLP >gi|333603776|gb|AFDH01000124.1| GENE 31 29908 - 32695 2318 929 aa, chain + ## HITS:1 COG:no KEGG:PPE_03474 NR:ns ## KEGG: PPE_03474 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 205 921 113 829 2074 347 38.0 2e-93 MKKKKNPAGGAQRPASSKYNASMNELRWLDEDPKKKKEREDAVISKAEAEALRKAERPKP QGLLRAKAEGAAGGGKHTESDGKGIAKASASAAQEKSAIKSVAAELVQDEDIYAGEEMPE DFEESLLVHDTAEDHSISEEDDDEAVVASDVPEALEAPAAPEARKVPEVPKTLEAQKAPE DIGNSNRQAQPDTVKTGKNGSPLLLLSERKEERGSEGVVYTDDIVEAAVTGEKIASRAID ESKMKPNSIGTRSLQDFSVERSKLADGSVTSEKLAPGAVLREHLAYGIVNGDHIQIRSIT SDKIADKSITVEKLADGTIDAAKFAPYSIQSHHLAEASITPELLEDQAVTSDKIKSGAVQ SRHLGNYVINSAKLAEDAITTEKLRHEAVTGEKIAPASISASHLVSGTVSGDKLSAGAVN AVHLAKGSVGDQHIGGGVIGSEHLKPGSVTREKLAPGAVDSAQLAEEAVGFRELAKKSVR PEHLADGSVLSVHIAEGEIRSSHIGSAQITEELIENGAIKSLKIGRRAVESRHIDEGAVL TSHLANQAVTTSKLATESVSTDKLTDYAVSTAKLNDSSVTSKKLARGAVESEHIQPFSIQ SVHIANNAITAAKIAEQSVNGSHLKEGAVSGVHLASSAVEGRHLAAGSVKQQHLAKGVVT SETLASGAVTGDALSEGAVTRETLAEGAVTTEALASGAVTSKALASGSVTSEALASGAVT REALAAGSVTNEKLAVDSVTSKALVAGAVTNKALAAGSVTSEALAAGSVTSEALTAGAVT RDALAEGAVTRDVLASGAVTRDALANGSVTSEALAEDAVTSEALASGAVTSKALAAGAVT SGALGKGAVTREALAYGAVTSEALAEGAVTSEALAAGAVTSEELAYGAVTSEALAEGAVT REALAAGAVTSEALAYGSVTSESAGGRIG Prediction of potential genes in microbial genomes Time: Sun Jul 17 10:44:52 2011 Seq name: gi|333603670|gb|AFDH01000125.1| Paenibacillus sp. HGF7 contig00073, whole genome shotgun sequence Length of sequence - 108444 bp Number of predicted genes - 108, with homology - 102 Number of transcription units - 59, operones - 22 average op.length - 3.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 35 - 88 19.3 1 1 Op 1 . - CDS 139 - 1089 232 ## COG0642 Signal transduction histidine kinase 2 1 Op 2 . - CDS 1503 - 2177 375 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 2386 - 2445 6.3 - Term 2388 - 2442 14.0 3 2 Op 1 3/0.364 - CDS 2474 - 3343 535 ## COG0840 Methyl-accepting chemotaxis protein 4 2 Op 2 . - CDS 3361 - 4815 1021 ## COG1012 NAD-dependent aldehyde dehydrogenases - Prom 4843 - 4902 4.1 - Term 4955 - 4996 9.1 5 3 Tu 1 . - CDS 5036 - 6577 1419 ## PPE_03278 hypothetical protein 6 4 Op 1 1/0.455 - CDS 6682 - 7638 824 ## COG0524 Sugar kinases, ribokinase family 7 4 Op 2 1/0.455 - CDS 7638 - 8939 1317 ## COG1486 Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases 8 4 Op 3 38/0.000 - CDS 8962 - 9786 842 ## COG0395 ABC-type sugar transport system, permease component 9 4 Op 4 35/0.000 - CDS 9802 - 10737 798 ## COG1175 ABC-type sugar transport systems, permease components 10 4 Op 5 . - CDS 10754 - 12046 1038 ## COG1653 ABC-type sugar transport system, periplasmic component - Prom 12093 - 12152 7.2 + Prom 12118 - 12177 6.9 11 5 Tu 1 . + CDS 12281 - 13324 845 ## COG1609 Transcriptional regulators + Term 13373 - 13418 5.2 + Prom 13489 - 13548 6.3 12 6 Op 1 1/0.455 + CDS 13596 - 14390 468 ## COG1349 Transcriptional regulators of sugar metabolism 13 6 Op 2 . + CDS 14380 - 15525 546 ## COG1820 N-acetylglucosamine-6-phosphate deacetylase + Prom 15528 - 15587 1.9 14 7 Op 1 . + CDS 15619 - 16785 460 ## COG4188 Predicted dienelactone hydrolase 15 7 Op 2 . + CDS 16797 - 17075 248 ## GYMC10_6233 platelet-activating factor acetylhydrolase plasma/intracellular isoform II 16 8 Tu 1 . + CDS 17181 - 17954 440 ## gi|154497235|ref|ZP_02035931.1| hypothetical protein BACCAP_01528 - Term 18054 - 18093 8.1 17 9 Tu 1 . - CDS 18110 - 19135 853 ## COG3397 Uncharacterized protein conserved in bacteria - Prom 19266 - 19325 5.5 - Term 19306 - 19348 0.8 18 10 Op 1 35/0.000 - CDS 19491 - 21227 253 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 19 10 Op 2 1/0.455 - CDS 21196 - 23028 1452 ## COG1132 ABC-type multidrug transport system, ATPase and permease components 20 10 Op 3 8/0.000 - CDS 23070 - 23414 394 ## COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component 21 10 Op 4 3/0.364 - CDS 23420 - 24031 389 ## COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component - Prom 24119 - 24178 6.7 - Term 24162 - 24203 7.9 22 11 Tu 1 . - CDS 24225 - 25208 444 ## COG2207 AraC-type DNA-binding domain-containing proteins - Prom 25282 - 25341 6.2 - Term 25319 - 25365 4.0 23 12 Op 1 . - CDS 25386 - 26264 530 ## GYMC10_2788 hypothetical protein 24 12 Op 2 . - CDS 26261 - 27049 415 ## GYMC10_2788 hypothetical protein - Prom 27106 - 27165 6.3 25 13 Tu 1 . - CDS 27227 - 28006 451 ## COG0500 SAM-dependent methyltransferases + Prom 28506 - 28565 3.5 26 14 Tu 1 . + CDS 28663 - 29886 450 ## COG4886 Leucine-rich repeat (LRR) protein 27 15 Tu 1 . - CDS 29899 - 30342 382 ## GYMC10_2773 cell wall assembly/cell proliferation coordinating protein, KNR4-like protein 28 16 Tu 1 . - CDS 30447 - 31622 1041 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - Prom 31658 - 31717 5.6 29 17 Op 1 . - CDS 31821 - 32843 472 ## COG1680 Beta-lactamase class C and other penicillin binding proteins 30 17 Op 2 . - CDS 32882 - 33706 576 ## COG0789 Predicted transcriptional regulators + Prom 33801 - 33860 7.0 31 18 Tu 1 . + CDS 33913 - 34269 316 ## COG1733 Predicted transcriptional regulators + Term 34294 - 34334 2.1 - Term 34282 - 34320 6.3 32 19 Tu 1 . - CDS 34348 - 34767 180 ## COG2249 Putative NADPH-quinone reductase (modulator of drug activity B) - Term 35041 - 35083 7.2 33 20 Tu 1 . - CDS 35122 - 36024 890 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - Prom 36175 - 36234 7.8 - Term 36178 - 36214 2.3 34 21 Tu 1 . - CDS 36237 - 36716 296 ## COG1335 Amidases related to nicotinamidase - Prom 36748 - 36807 2.4 35 22 Tu 1 . - CDS 36821 - 37405 238 ## COG1309 Transcriptional regulator 36 23 Tu 1 . + CDS 37337 - 37816 88 ## COG2124 Cytochrome P450 + Term 37863 - 37897 -0.7 - Term 37940 - 37995 14.3 37 24 Tu 1 . - CDS 38073 - 39521 779 ## COG0753 Catalase - Prom 39581 - 39640 2.5 - Term 39676 - 39713 8.0 38 25 Op 1 5/0.273 - CDS 39767 - 40276 649 ## COG3832 Uncharacterized conserved protein 39 25 Op 2 . - CDS 40312 - 40650 327 ## COG0640 Predicted transcriptional regulators - Prom 40722 - 40781 6.1 + Prom 40874 - 40933 5.8 40 26 Tu 1 . + CDS 41037 - 41414 327 ## PPE_03823 hypothetical protein 41 27 Op 1 . - CDS 41544 - 42332 603 ## BMQ_pBM70018 hypothetical protein 42 27 Op 2 . - CDS 42333 - 43235 344 ## PROTEIN SUPPORTED gi|225084369|ref|YP_002657150.1| ribosomal protein S16 43 27 Op 3 . - CDS 43232 - 43471 242 ## BCA_3385 hypothetical protein - Prom 43505 - 43564 7.3 + Prom 43511 - 43570 6.7 44 28 Op 1 . + CDS 43620 - 43817 85 ## BCAH187_A3321 hypothetical protein 45 28 Op 2 . + CDS 43826 - 44158 358 ## BMQ_pBM70015 hypothetical protein 46 29 Op 1 . - CDS 44280 - 45257 233 ## BPUM_0760 hypothetical protein 47 29 Op 2 . - CDS 45267 - 45449 155 ## - Prom 45490 - 45549 2.9 48 30 Tu 1 . - CDS 45611 - 46366 335 ## COG0730 Predicted permeases - Prom 46456 - 46515 4.7 49 31 Op 1 1/0.455 - CDS 46726 - 47784 504 ## COG2072 Predicted flavoprotein involved in K+ transport 50 31 Op 2 . - CDS 47821 - 48330 367 ## COG1309 Transcriptional regulator 51 32 Tu 1 . + CDS 48668 - 49219 -191 ## COG0386 Glutathione peroxidase + Prom 49235 - 49294 4.5 52 33 Tu 1 . + CDS 49367 - 50080 514 ## COG0637 Predicted phosphatase/phosphohexomutase + Term 50100 - 50141 5.0 - Term 50080 - 50132 13.2 53 34 Op 1 . - CDS 50253 - 50564 329 ## Pjdr2_2926 hypothetical protein 54 34 Op 2 1/0.455 - CDS 50629 - 51858 871 ## COG0738 Fucose permease 55 34 Op 3 . - CDS 51862 - 52890 640 ## COG1940 Transcriptional regulator/sugar kinase - Prom 52936 - 52995 7.8 + Prom 53456 - 53515 1.8 56 35 Tu 1 . + CDS 53560 - 54186 59 ## COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component + Prom 55117 - 55176 2.3 57 36 Op 1 . + CDS 55308 - 55997 170 ## COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component 58 36 Op 2 . + CDS 56095 - 57150 798 ## COG0492 Thioredoxin reductase + Term 57268 - 57304 3.3 - Term 57474 - 57499 -0.5 59 37 Tu 1 . - CDS 57500 - 58168 514 ## BMD_3778 transcriptional regulator - Prom 58353 - 58412 3.4 + Prom 58198 - 58257 2.6 60 38 Tu 1 . + CDS 58345 - 58968 512 ## COG1971 Predicted membrane protein + Term 59021 - 59053 1.5 61 39 Tu 1 . - CDS 59552 - 59974 84 ## BcerKBAB4_2408 hypothetical protein - Term 59995 - 60037 -0.5 62 40 Tu 1 . - CDS 60121 - 60234 63 ## - Term 60273 - 60302 1.4 63 41 Op 1 . - CDS 60357 - 60872 339 ## COG1309 Transcriptional regulator - Prom 60903 - 60962 6.1 64 41 Op 2 . - CDS 60971 - 61942 432 ## BL02711 kinase-like protein - Prom 61978 - 62037 10.4 + Prom 61937 - 61996 5.5 65 42 Tu 1 . + CDS 62126 - 63313 644 ## COG0477 Permeases of the major facilitator superfamily + Term 63345 - 63395 12.1 - Term 63339 - 63378 9.3 66 43 Op 1 . - CDS 63424 - 65808 1940 ## COG0142 Geranylgeranyl pyrophosphate synthase - Prom 65843 - 65902 3.1 67 43 Op 2 . - CDS 65983 - 67689 1027 ## COG1132 ABC-type multidrug transport system, ATPase and permease components - Prom 67821 - 67880 3.8 68 44 Tu 1 . + CDS 68000 - 68497 423 ## GYMC10_4987 DinB family protein + Term 68553 - 68609 10.4 + Prom 68684 - 68743 6.2 69 45 Tu 1 . + CDS 68860 - 69540 546 ## COG0491 Zn-dependent hydrolases, including glyoxylases - Term 69565 - 69591 -1.0 70 46 Tu 1 . - CDS 69747 - 70316 154 ## COG1309 Transcriptional regulator - Prom 70341 - 70400 4.2 + Prom 70376 - 70435 3.6 71 47 Tu 1 . + CDS 70489 - 71469 566 ## COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases + Term 71657 - 71726 15.7 - Term 71653 - 71704 8.2 72 48 Op 1 . - CDS 71725 - 72075 355 ## Pjdr2_0938 hypothetical protein 73 48 Op 2 4/0.273 - CDS 72089 - 72523 172 ## COG3795 Uncharacterized protein conserved in bacteria 74 49 Op 1 4/0.273 - CDS 72632 - 73897 803 ## COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain 75 49 Op 2 . - CDS 73894 - 74328 589 ## COG3795 Uncharacterized protein conserved in bacteria 76 50 Op 1 . - CDS 74443 - 74508 61 ## 77 50 Op 2 8/0.000 - CDS 74560 - 75372 585 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) - Prom 75616 - 75675 6.3 - Term 75647 - 75685 5.5 78 50 Op 3 . - CDS 75716 - 76984 1252 ## COG0477 Permeases of the major facilitator superfamily - Prom 77060 - 77119 3.8 - Term 77087 - 77140 6.2 79 51 Op 1 35/0.000 - CDS 77143 - 79164 207 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 80 51 Op 2 . - CDS 79179 - 80936 238 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 81 51 Op 3 . - CDS 80982 - 82496 1372 ## COG2303 Choline dehydrogenase and related flavoproteins 82 51 Op 4 . - CDS 82535 - 82783 318 ## gi|70720854|dbj|BAE07078.1| BtrV 83 51 Op 5 . - CDS 82800 - 83441 551 ## CDR20291_1709 putative phosphoglycerate mutase 84 51 Op 6 . - CDS 83480 - 84496 773 ## COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases 85 51 Op 7 . - CDS 84533 - 85819 819 ## COG0019 Diaminopimelate decarboxylase 86 51 Op 8 . - CDS 85847 - 87106 738 ## Ccel_2510 hypothetical protein 87 51 Op 9 . - CDS 87103 - 87366 306 ## gi|70720849|dbj|BAE07073.1| possible carrier protein 88 51 Op 10 . - CDS 87435 - 88343 593 ## Dd1591_3651 hypothetical protein 89 51 Op 11 . - CDS 88324 - 88743 320 ## COG2105 Uncharacterized conserved protein 90 51 Op 12 10/0.000 - CDS 88811 - 89509 495 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 91 51 Op 13 . - CDS 89521 - 90570 927 ## COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases 92 51 Op 14 . - CDS 90594 - 91421 484 ## ANT_00330 hypothetical protein 93 51 Op 15 . - CDS 91424 - 92530 795 ## COG0337 3-dehydroquinate synthetase 94 51 Op 16 . - CDS 92532 - 93830 1096 ## COG0001 Glutamate-1-semialdehyde aminotransferase 95 51 Op 17 . - CDS 93872 - 97546 2309 ## plu4149 hypothetical protein 96 51 Op 18 . - CDS 97593 - 99407 704 ## gi|70720840|dbj|BAE07064.1| BtrL 97 51 Op 19 . - CDS 99397 - 100635 794 ## COG0438 Glycosyltransferase 98 51 Op 20 . - CDS 100654 - 101406 503 ## Despr_0915 radical SAM domain-containing protein 99 51 Op 21 . - CDS 101436 - 102692 532 ## COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis - Prom 102764 - 102823 7.7 100 52 Tu 1 . - CDS 103114 - 103182 59 ## - Term 103292 - 103319 -0.1 101 53 Tu 1 . - CDS 103404 - 104465 966 ## GYMC10_4996 putative aminotransferase - Prom 104511 - 104570 4.5 - Term 104539 - 104580 1.7 102 54 Op 1 . - CDS 104589 - 105206 498 ## COG2249 Putative NADPH-quinone reductase (modulator of drug activity B) 103 54 Op 2 . - CDS 105253 - 105906 608 ## COG1309 Transcriptional regulator - Prom 105939 - 105998 7.6 + Prom 105886 - 105945 6.7 104 55 Tu 1 . + CDS 105969 - 106163 85 ## + Term 106227 - 106267 -0.3 + Prom 106235 - 106294 5.3 105 56 Tu 1 . + CDS 106316 - 106861 472 ## GYMC10_2306 hypothetical protein + Term 107039 - 107068 -0.9 - Term 107083 - 107110 -0.8 106 57 Tu 1 . - CDS 107121 - 107705 584 ## COG4430 Uncharacterized protein conserved in bacteria - Prom 107745 - 107804 3.7 + Prom 107535 - 107594 6.3 107 58 Tu 1 . + CDS 107815 - 107973 105 ## 108 59 Tu 1 . - CDS 108076 - 108444 274 ## COG4767 Glycopeptide antibiotics resistance protein Predicted protein(s) >gi|333603670|gb|AFDH01000125.1| GENE 1 139 - 1089 232 316 aa, chain - ## HITS:1 COG:lin2727 KEGG:ns NR:ns ## COG: lin2727 COG0642 # Protein_GI_number: 16801788 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 17 310 165 457 459 223 39.0 4e-58 MFLETLAPPSATFVARWGIIFATSSLIAGSLLILVASIFLVRPIKKLTKATKRIAAGDFN VKLNIKQSSELGTLARSFEDMMHDLKQLEQMRREFVTNVSHEVQSPLTSISGYASALKQV GLSDHERSRYLDIIIAEAKRMSKMSDSLLKLSLLESQSRQLRLTTRSLDEQIRRVIVALQ PQWNARRLQFELDLDTIQVTADHELLNQVWTNIIGNSIKFSEDGGMINVSIGQDIKNVTV RISDTGIGIPLDDQKRIFERFFKADRSHSRKVDGSGMGLAIVKQIVSLHQGDIRVESELG QGTTFIVALPITTPTD >gi|333603670|gb|AFDH01000125.1| GENE 2 1503 - 2177 375 224 aa, chain - ## HITS:1 COG:lin2728 KEGG:ns NR:ns ## COG: lin2728 COG0745 # Protein_GI_number: 16801789 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Listeria innocua # 1 221 1 222 225 228 50.0 7e-60 MPTILVADDDANIRELVCLFLRNDGFATAEAADGKEALTVYASTHIDLVVLDIMMPIMDG WTLCKELRRANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVKALLKRY RIGSTQTIQFGNVILDRQTYKVVRGSESLTLPLKEFELLYKLAGTPGQVYTRGQLIDQIW GIDYAGDDRTIDVHIKRLRERFATTPDFRIETVRGLGYRLEVCE >gi|333603670|gb|AFDH01000125.1| GENE 3 2474 - 3343 535 289 aa, chain - ## HITS:1 COG:BH1006 KEGG:ns NR:ns ## COG: BH1006 COG0840 # Protein_GI_number: 15613569 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Methyl-accepting chemotaxis protein # Organism: Bacillus halodurans # 6 282 9 285 288 349 71.0 3e-96 MNIETEGQTQHELIRAFVKVAPLLKNLTNDDITIGIYDTEKLIVNIPGNTFSLNVSPGDP LMEGDIVTNAIRNNTALSAVVPKELFGFPLAARAIPLHDEQGRVIGGVGMGTSLEKANKL FEMAESFSAIVEQTTASIGDISQSVSNLTDRVTDVTNQMKDVSSSAQQIGKISTVVKEIS DQSNMLGLNAAIEAARAGEVGRGFSVVADEIRKLATSSKENVDQINGITKNIQELLLRLN HTFSDINTLTDTQSGAIHEFSATIQEISIKAEELAQVAEETLYSKENSQ >gi|333603670|gb|AFDH01000125.1| GENE 4 3361 - 4815 1021 484 aa, chain - ## HITS:1 COG:BH1005 KEGG:ns NR:ns ## COG: BH1005 COG1012 # Protein_GI_number: 15613568 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Bacillus halodurans # 4 484 5 485 485 769 76.0 0 MDYQLLGKQFIDGEWRDGRSGKALPDINPYNDAVITTFQIANVADIDNAYQAAYKAKLEW DKVNPYRKRDILENAVTYIEAHEEEITSLIIQELGGTRLKAAFEIGLVKNMVKEAATFPL RMEGKILPSVEDGKENRLYRIPAGVVGVISPFNFPFFLSMKSVAPALGAGNGVVLKPHED SPITGGTLIGKIFEEAGVPKGLLNVVVTDIKEIGDAFVEHPIPRIISFTGSTKVGSYIGQ LAVKNFKKPLLELGGNSAFIILEDADIDYAVQAATFSRFTHQGQICMSANRILVQKTIYP DFVDQFKEKVSTLTTGDPSDLQTIIGPVINNRQAETLEKLIARGIEQGAAVLVQGKITGR MVEPTVLVNVKPDMDVAQDELFGPVVCIIPFETEEEAVEIANDTRFGLSGAIHTSNLERG VEMAKKIHTGMIHVNDVTINDEPIVAFGGEKQSGLGRLNGEWSLDEFTTLKWISVNYGQR KFPY >gi|333603670|gb|AFDH01000125.1| GENE 5 5036 - 6577 1419 513 aa, chain - ## HITS:1 COG:no KEGG:PPE_03278 NR:ns ## KEGG: PPE_03278 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 2 513 3 511 511 668 72.0 0 MQFGKTLITGLSLAVLGLGLGIAQSPSVSASGTDYYVAANGSDSNPGTLSSPWKTLQHAA DQAGPGSTVYVRGGVYNEKLKITKSGSAQQGPITFASYNSEAAVIDGTGLAVSGTEGLID LADASYVNIQGFEVRNFTTAKSNVMPVGIYVHGAGGFINLSGNKVHAIKNTAAPTGTDLL GRDAHGIAVYGTKAPQSIHDLTIDGNELYNLVLGSSESLVLNGNVDTFAVTNNTIHDNDN IGIDVIGFEGKAPDASYDQARNGVIRGNRVYNISSNNNPSYGKKLPNNSNSAGGIYVDGG KDNLIERNYSYGNDIGIEIASEHAGKATSRITVRSNMIYNNRLTGLAMGGYDKKRGATVN CVIVNNTFYKNDSLGDGSGQLYVQYDTQNNVIKNNIFVAGTSDVLIYNEYTKNSGNIVDY NLYFAPGGSANAAWTWKNVTYNGFAAYKKGTGNDAHSLFADPSFVNAASSDFHLRPGSPA IDAGSTEPDIIGSLDIDGDPRVRGAAVNIGADE >gi|333603670|gb|AFDH01000125.1| GENE 6 6682 - 7638 824 318 aa, chain - ## HITS:1 COG:PAB0280 KEGG:ns NR:ns ## COG: PAB0280 COG0524 # Protein_GI_number: 14520634 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Pyrococcus abyssi # 11 275 5 247 293 98 29.0 2e-20 MHTASTRKPVVVVAGELNADIIVSGRDVIPEWNREKIIDGFQTVLGSSSAITACALASLG IDVRFVGVAGQDDLGAYCIGELQRMGVNTDGVTVLPDVKTGVTLSFTTPSDRGLLTYPGS IPMLVPEYIPESILREADHLHFGSYYLQDGMRLHWKKLFKEARTRGTRTSFDAGWDVRNE WDSEGIRSLLEETDLFMPSEEEALHIFAADRIADIREKLGSAAGRVAVKQGSKGASLLAP DGSVATAGPCRVSPRDTTGAGDCFNAGIIYGSLHGLQGEELLQYGNACGALSTLGVGGTG NLPTTAAVGRLLKEQSTA >gi|333603670|gb|AFDH01000125.1| GENE 7 7638 - 8939 1317 433 aa, chain - ## HITS:1 COG:BS_melA KEGG:ns NR:ns ## COG: BS_melA COG1486 # Protein_GI_number: 16080082 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases # Organism: Bacillus subtilis # 1 433 1 432 432 308 38.0 1e-83 MTKISIIGAGSAFTQEIATDILLIEGIEGGTLALVDIDGERLEIARKLVARIIEQTGKKW NVIASTDRREVIGGSRFVINQIEVGGLQTVRYEYEIPLKYGVNQCIGDTLGPGGLFKTLR TLPTWMDIVRDIEDLCPDATILNYTNPMSAVTLLTSRITTLPVVGLCHSIQNTSRQLSKY AGVPYEQMQWKAGGINHMSWFVELTHEGQDLYPLLREKIQDPELLKKDPVRFDAMKYLGA FVSESSGHFSEYIPYYRKRQSLIDRHCSSGYNGATGYYADNWPIWRKENDEKIIEQLDGK QPLELEPSNEYAAIIIEGMLKNEPKVIYGNVPNNGLITNLTTDGIVEVACMIDRNGIHPC YFGSLPEHLAALCRSNMAFFELAVGAVLHKDKEMARHALMVDPLSAAVCSLEEIGEMFEE LYEAERDFVPVLK >gi|333603670|gb|AFDH01000125.1| GENE 8 8962 - 9786 842 274 aa, chain - ## HITS:1 COG:lin1843 KEGG:ns NR:ns ## COG: lin1843 COG0395 # Protein_GI_number: 16800910 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Listeria innocua # 2 274 5 276 276 209 41.0 4e-54 MQRRNRWLDGAILTVLAAAGCAMLLPYLWMVLSSLKSNMEIVSGSHTLFPQEASLEGYRT VLLDAPFVRWLLNSAVTSVVITAATLFTSALAGYIFAKHEFRGKRILFLLILATMMIPFQ VVMIPTYLITAKLGLVNHLLAIILPNLVSSYGVFLAKQFIEDIPQDLLDAARIDGAGELR LMVRIIAPLIFPMLSALGIFTFMNSWNNYLWPLIVLDDTRKMTVPLALVYFNGTHTVNYN VVMSAAVLITVPVIIVFLIFQKQFIKGLTMTGMK >gi|333603670|gb|AFDH01000125.1| GENE 9 9802 - 10737 798 311 aa, chain - ## HITS:1 COG:XF2447 KEGG:ns NR:ns ## COG: XF2447 COG1175 # Protein_GI_number: 15839038 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Xylella fastidiosa 9a5c # 35 306 14 288 293 175 36.0 1e-43 MNLEPAAGRTRKIPPAAQHKGRKNARAFVYLSLIPILLLFGAFAFLPIGWSLGLSLFKYN PLSSNTIFVGMANYVRMLEDSVFLKSLWVTVKFVVVAVAVNIAVTLLIAVAIQRLQAGWL RNLMRTVFFLPTIAPLAGTAIVWSTMFNYNHGLFNMLLEKLHMAPVQWLSDPHYALYSVI IMTLWADIGYNIVLFIAGIDSIPGLYYEAALLDGANRWHSFRYLTLPLLRRTMLFVSVTT VVSYFQAFAQFQIMTKGEPFNETRVIALHIYEMAFSNSNMGYASAMATVFLMIILAVTVL QLKWGRTDWEH >gi|333603670|gb|AFDH01000125.1| GENE 10 10754 - 12046 1038 430 aa, chain - ## HITS:1 COG:AGl1009 KEGG:ns NR:ns ## COG: AGl1009 COG1653 # Protein_GI_number: 15890622 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 40 422 29 405 410 101 26.0 3e-21 MKKVRFFSFISLLFAMIIVSSCTNDKETTADNSANPDGKVKLVFWSHQEDAFMNAYKNLI AAYQAKHPEVEIDYQSFPYDVYPQKLKASFIAKNPPDIAEMFGTWVPVYTENGLLAEIPD GERLRDGYYKAPLGGYTWNGKLYGLPLEFNIENGGMLIHPQMLKEKGIAGPPSTWEELVE SARKLTVRDGKGIKVKGFDFVSGDNITFTFLSMILQQNGKYWGENDHVNFRTPEAKKAME ALISLIKDDKVADLTTFGGELDTSDYFFQGSSAMTYRGPWSIAAGLNTYKAEDFEYVPVP SFTGNPPLYAAESGWGLVASQKSKQRKAAVDFIEFVSSNENLLQWNLSTFTVPAKKEVAE NPEFLKANPFMKTSLDILTLGEWIGPITDRDYFFKVINDHFQLMASGQETVDAGLSGIEK SINDNQDQHK >gi|333603670|gb|AFDH01000125.1| GENE 11 12281 - 13324 845 347 aa, chain + ## HITS:1 COG:VCA0132 KEGG:ns NR:ns ## COG: VCA0132 COG1609 # Protein_GI_number: 15600903 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Vibrio cholerae # 1 313 1 311 334 156 29.0 5e-38 MPTLKDIADRVGVSISTVSRVLADDTSRASHSKTRRKIWDAAQELGYTVKLPSHDPVKRI GCIVSTMQGRRYHPYFSVIFEGIEKELSLHGYQIAFTYTQEDLQKPEILQQVIHKDQIGG LIIIEGIEKQLYDYIRKHVEHIIGIDVSDPDIPTISYDRVEAARTAVQHLTDQGHKDILF IGGTGLSGEFQREKRYRGYKLALEQAGLAVKPQYVLNAEWEPDQAYRLVLNYMDEHRGHL PTAVFAASDIMAMAAMRAISEKGYQIPQDFVIIGFDDNEPSRYTVPPLSTIHIPTFEIGS VAARTLLQEMQTPYPLPVKILLPFQPLFRQSSDRRLQKLQDENNATR >gi|333603670|gb|AFDH01000125.1| GENE 12 13596 - 14390 468 264 aa, chain + ## HITS:1 COG:BS_glcR KEGG:ns NR:ns ## COG: BS_glcR COG1349 # Protein_GI_number: 16080683 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Bacillus subtilis # 1 254 1 255 258 200 43.0 3e-51 MYQEERLLKILDYINKHHAMSVMDICSLLNVSRDTARRDIVKLVQEGVVIRTHGGVALPQ LQKEIATYQERLIDETDSKRKIGKLAAKLVQDHETVILDVSTTVQSAAEQISAKHITAVT HSIDIVGILSGREDLQVYVLGGYLHAKNRLLYGPSVIEKLRELRADKAFIGATAIRADGL YFPYEEDVAVKKEMARRSDQVIVVADSTKFTNKSVYRLDFDFVDILITDQEVPFAIREVL HTKNITLIQCEEKDKYEEEYKDES >gi|333603670|gb|AFDH01000125.1| GENE 13 14380 - 15525 546 381 aa, chain + ## HITS:1 COG:lin2213 KEGG:ns NR:ns ## COG: lin2213 COG1820 # Protein_GI_number: 16801278 # Func_class: G Carbohydrate transport and metabolism # Function: N-acetylglucosamine-6-phosphate deacetylase # Organism: Listeria innocua # 3 378 1 377 380 488 64.0 1e-138 MSLKILHNVNVVQEDNSCMSATLWIRDGMIERIESSLSALPDGDYEFMDGQGHLLIPGMI DVHIHGANGFDMMDGSETSIQEVSRACAATGCTSFLVTSVSSTIEALIAMIRSVKRVAGH EAGAKIAGLHLEGPYLNPKRKGMQNERFLRHPDLTEMKEIFDEADGLIKMVTIAPELPGG MELVSFLKERGVIIAVAHSDATYEEAKQAFEAGASHVTHCFNGMRPIHHRDPGLVVAAFE QEHVSLQAIVDGIHLHPAIVRMMHRLKGPDGMVLITDALQAMGLGDGKYMFGGHPVTVSE GVARLEDGTLASSTVTMNEALRLTVDTGISLTDAVKMASSSPARLLGLAAKGKISAGFDA DLVLLDEQFQVQWTMIKGSIV >gi|333603670|gb|AFDH01000125.1| GENE 14 15619 - 16785 460 388 aa, chain + ## HITS:1 COG:BH0727 KEGG:ns NR:ns ## COG: BH0727 COG4188 # Protein_GI_number: 15613290 # Func_class: R General function prediction only # Function: Predicted dienelactone hydrolase # Organism: Bacillus halodurans # 1 364 1 360 450 187 33.0 3e-47 MRLFEVLLIGSNLVLLTVLLFMRNRKIALGAGLAAVCALSVHLIQEGYRWQLAPAYFAAV ILFILVAIRIYRNPKSVKPRKKTRYIGYSIVAVLLSFSVFLAQAMPILVLPRPGGEAAVG TRIFHFTDFTRQESYPNVPKNDRELMVRVWYPAKPQSGKGELLFPEDPAQFRTYKENFSG VFKVPAFILDYWKYTRGYSHLNAELLPASAPYPVVLISHGMGTGSVLHVSQAENLASHGF IVAAIDHTYSTAATLFPDGRITGFETKTPADDFYTYAKEVGAVWAADIQFVLSEMEQLNQ DPKSSLKGMMDVNHTGIMGHSFGGATAFNATYYNDKIKAGIDMDGTLYDLEDKGQMPKPF MFLNSDKRSMLSAAIKTMRFRAVSGHNW >gi|333603670|gb|AFDH01000125.1| GENE 15 16797 - 17075 248 92 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_6233 NR:ns ## KEGG: GYMC10_6233 # Name: not_defined # Def: platelet-activating factor acetylhydrolase plasma/intracellular isoform II # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 84 410 493 501 90 47.0 2e-17 MMDSVGAHNGQVIHIRGTDHFNYTDLQFYTPMLKYTGMTGSINGYRGADIVNSYVLDFFT KHLKEKGGQLLDDAPHPQYPEIEFQKATLAAE >gi|333603670|gb|AFDH01000125.1| GENE 16 17181 - 17954 440 257 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|154497235|ref|ZP_02035931.1| ## NR: gi|154497235|ref|ZP_02035931.1| hypothetical protein BACCAP_01528 [Bacteroides capillosus ATCC 29799] hypothetical protein BACCAP_01528 [Bacteroides capillosus ATCC 29799] # 10 256 68 309 310 156 35.0 1e-36 MSGLAFYESSPIPQPASPQILQQAPSASPTGIRKFLTYNGYRYAFVDDGAPFKFTGTEPV KSLGTLVVDLNRETGKNTEDSDVEKDYAATFAVGGELYEIPAYPSHFRIAVRYEQNFYLA EIVAKVNDSAITAKDYLDMSNLKEHVQDIHILNHAGNDILKKMTDPVSVKSIIEGLYAAK TADLTNRDFKGIAEAQSQGKSYQLKFNLTDGTSMAMYIIPEFKIVSMGDAYYQLPDRFLD QSGDTFKNLKQDALPLY >gi|333603670|gb|AFDH01000125.1| GENE 17 18110 - 19135 853 341 aa, chain - ## HITS:1 COG:BH1303_1 KEGG:ns NR:ns ## COG: BH1303_1 COG3397 # Protein_GI_number: 15613866 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 23 182 19 178 178 184 55.0 3e-46 MNLALPNHALLHKLVAACGMLLMLALLMVLFPETSSAHGYLDVPASRGLLCKNNVNTDCG GASYEPQSAEAGKGFPNGGPGDGHIASAGNTFPKLDEQTSTRWSKVPMKAGPQAFKWQLN AAHATTTFKYFITKPGWNPNAPLTRASFDLTPFCQVDLNGASPSNYYTTNCNVPERTGYQ VILAIWEVSGAPTAYVNVADVDFGGGSALPAPTNLASTAVTDNSVSLSWASIAGAASYQV YRDNVAVGTTTSTSYTNTGLSSGTSYSFTVTAIDSSGKASPSSSVVTVKTTGGSTTTYPA WSATTVYVGGNKVSYNGVNYEAKWWTQGETPTGTNVWKVIP >gi|333603670|gb|AFDH01000125.1| GENE 18 19491 - 21227 253 578 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 338 558 134 355 398 102 33 1e-20 MDLLRNITAGNPRALIKPVFYTTLANLIGIIPFALLVEAARLIFEPFASPGATLQAERLW WVCGGMAASLVLMYVSEVPAYRSQFRQAYSAAAEGRTRLAEHLRKLPLGFLNKRDPGDLA NMMMGDFTMVEHGISHLVPQMIGALVMPVLAIAGLSFLDWRMALALFAAFPLAVALVMLT SGIQHKLGANHMRAKIDAANRLQEYLNGIRVIKAYNVTGESFTRLTLSFRELMRQSIRIE GLLGPIVLSAIACIRAGLTFMIMVGVHLLLGGSLDLVVFVSFLIVGTRIYDPLTAALVNY AEFRYHEQAGERIVRLLQEPVMPGKSQPPAAYDIELEQVTFGYNRQTVLSEVNLFIPAGT FTALVGPSGSGKSTVLRLIARFYDPVGGKVLLGGENIRDMEPEALLSKVSMVFQDVYLFQ DTIAGNIRFGRNNATMEEIEEAARQACCHDFIMKLPNGYDTLVGEGGSTISGGEKQRISI ARALLKDAPIVLLDEATASLDPENEAVIQQAIDRLVQGKTVIVIAHRLKTVRSADNIVVL DNGSIVEQGSHSNLLAAKGLYARLWDIQQQTDTWKMIE >gi|333603670|gb|AFDH01000125.1| GENE 19 21196 - 23028 1452 610 aa, chain - ## HITS:1 COG:FN0614 KEGG:ns NR:ns ## COG: FN0614 COG1132 # Protein_GI_number: 19703949 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Fusobacterium nucleatum # 1 581 8 575 578 370 37.0 1e-102 MSNKSGVARLLQIAEEKRGLLVVSGILSALSAIGQLIPYISVYFILKELLAHAAHPAEAD GMFMVRWGIIALLGLIGSLVLMYAGGLISHIAAFRILYGLRIKLSSHIGKLPLGWLNGTS TGAVKKTLEQNVEKVETFVAHQLPDLVHVAVTTLLMITVMFYLNVWLAFACIVPILVGFG VQIILMTGPETKKNVKKYHDALERLNSSAIQYVRGMPAVKVFGQTVHSFRKFYADMIYYR DYCVKFTDQFQNGFLIFKVILVSFAAFVLPVGVFLLSRDPGNVAFASVLLFFLVMAPGVS APMFKIMYLMSTLRDIGEGVERIDRLLAEKPIPEPERPVKPDQYDVTFDKVSFSYEAKAG SGEALSNISFIAAQGQVTALVGPSGAGKSTVANLVPRFWDVNQGAIRIGGVDVRDMSVTD LMDTVAFVFQETFLFYDTVYNNIAVGRPGAAAEDVYAAARAAQCHEFIGRLPQGYETRIG EGGVYLSGGEEQRIAVARSILKNAPVLVLDEATAFADPENENEMQLALKELIRGKTVLVI AHRLHVIRDADQILVLSGGRLTEQGKHDELVAAGGLYARMWHTYTDSEKWHIGMKKEATD DGFTAQHHGR >gi|333603670|gb|AFDH01000125.1| GENE 20 23070 - 23414 394 114 aa, chain - ## HITS:1 COG:BH0990 KEGG:ns NR:ns ## COG: BH0990 COG0614 # Protein_GI_number: 15613553 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-hydroxamate transport system, periplasmic component # Organism: Bacillus halodurans # 7 112 221 324 327 76 32.0 1e-14 MFSGKEFTSFNRSRMGVFYEDLALTPVEAFKQGGNFNLEGLAEADPDYLFVVNNYVQPVA GGVMASMKDNPIWNRLKAVKNNHVFVLDDSSVIGPMPLGKIVAIDEIMKAMSGQ >gi|333603670|gb|AFDH01000125.1| GENE 21 23420 - 24031 389 203 aa, chain - ## HITS:1 COG:BH0990 KEGG:ns NR:ns ## COG: BH0990 COG0614 # Protein_GI_number: 15613553 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-hydroxamate transport system, periplasmic component # Organism: Bacillus halodurans # 15 201 16 207 327 106 31.0 2e-23 MIRSRITLPFWAAALCILLLTGCSHAEKTVSPEAGSPSSGPAAQTTGEKGAFPRTIQHAK GSLVIDKKPEKVATPYIVYLDYLTVLGEPPHASQGMDMIGSFPNLKKRLEGKQVMDLGRE PSMEKLLAASPDLIISEDENKFTEYNKIAPTVIIPHSEDWKAQLRIIAKIIGAEEKAESV IADYEKKRPNTKKSWRQNEERRS >gi|333603670|gb|AFDH01000125.1| GENE 22 24225 - 25208 444 327 aa, chain - ## HITS:1 COG:all2621 KEGG:ns NR:ns ## COG: all2621 COG2207 # Protein_GI_number: 17230113 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Nostoc sp. PCC 7120 # 166 322 10 166 175 142 43.0 6e-34 MTESVHDNVNQFFDQMDFFYRSLNRTENMERSDSTGEGFALRIVPRPELIIVLTNCTLYK NKQVNFRFDIPMVELSICLEGEGVGQVNGFEIPLCPNTVNLGLMGHGAGEFCFAGGRSLV TASIYIPVSSFNHYLENIAQGKTADFHRLLGSKSFHQYRQAINPAMLQLVRQLIHMPFSQ AIRNIHMECKVLELLSLSFQQLLFENDPGPSSFSMTRSELEKIRRAREILLERMECPPSL LELSRIAGLNDFKLKAGFKKVYGTTVFGYLREQRLEKAKQLLQSGRFRVGEAAAYVGYTN SSYFADAFRKHYGVNPGEFMRSSSTVF >gi|333603670|gb|AFDH01000125.1| GENE 23 25386 - 26264 530 292 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_2788 NR:ns ## KEGG: GYMC10_2788 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 289 260 548 551 459 75.0 1e-128 MILKYEPSYSRTTGLAMLDCAIELGSARAKRLTVEGSGTYAKEDVCFRDEVAECTANDVF AEVTLVIKRETEESYGRALWFLTRLLSLGFPKSYQIKLKSGLKQGLPIKGLAKSGTHRFF AQALEYPNLHPLLEEYARAAMEPFEWYADTEGEKNCMPGSYAVFGLGLADRAYFPLVEDY MGKIDAEHQSVQNHFTVALAERHGVNAETIPTLVKCMLHSTDSMKLKIKADMEDDTHLRV LLEQVRGLQSYEVAHINYLIWGGTDKLKKMAAKEEGDRRQRLSELLQLAGHQ >gi|333603670|gb|AFDH01000125.1| GENE 24 26261 - 27049 415 262 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_2788 NR:ns ## KEGG: GYMC10_2788 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 241 1 238 551 325 65.0 1e-87 MDLTLETILDEMKRQIDKWAAYISDKDADQIVKRTSLQVGIHDYALLEYANGRTNVSDNN LDFTVPGAAARRGNSAETLTEEQVRERIVPELAAYIGQTLDALTPALIDYHFTFTGKFRT REGEVRVRIYEYVNETKKKQLLERISFYIEKKLEAGKYPTKPLETFFLSRHLLDERLFPN MDVGRIISLFEKIQQVNKGNKHLAEHRNYLTVALRNWAEDQWLPRYFDQAGTQFQKQYKK KARLGWKIPSRVRSSLSFMPQS >gi|333603670|gb|AFDH01000125.1| GENE 25 27227 - 28006 451 259 aa, chain - ## HITS:1 COG:BH2887 KEGG:ns NR:ns ## COG: BH2887 COG0500 # Protein_GI_number: 15615450 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Bacillus halodurans # 2 256 5 260 261 207 40.0 1e-53 MSSELSNNHRNPKVYPEHPDVGVKPGAEALALLQPRTGERILDVGCGNGDLTAEIAAAGA VPTGIDLSEEMVRKARQKYPELNFQVKDVCQYRTDVRFDAVFSNAAVHWIKDAPAVARTI WLALREGGRFVAEFAGRGNVAALTTAMEQELEARGYAWAGRSPWYFPTIGEYASLLEQTG FRVMLAQHFDKPTPLKGDIGVRKWLDSFADYFFRDVTLADKASIYRAIEAKVKPHLVREG QWMMDTSRLRIVAVKESLD >gi|333603670|gb|AFDH01000125.1| GENE 26 28663 - 29886 450 407 aa, chain + ## HITS:1 COG:lin0354_1 KEGG:ns NR:ns ## COG: lin0354_1 COG4886 # Protein_GI_number: 16799431 # Func_class: S Function unknown # Function: Leucine-rich repeat (LRR) protein # Organism: Listeria innocua # 50 226 115 291 292 130 42.0 4e-30 MDITQDFMDERFKTYVLDHFSENPGRIQTGDVEGIVSLQLTNLQFSSLKGLEHFTSLEEL DCSFNNLTELDISQNAHLKRLECKRNNLHLLDTSHNSKLKELSCSNNEIYSLDLTANVQL EAVDCSFNRLRNLDVSRNPMITKLICCWNMISDLHVEQNPNLQELNCSYNSLFNLELKRN ASLMYLDCGSNYLIELIIQDGAGLVKIRCNNNHLKQLDVSQCPVLESLRCFQNHLTSLDL SHNPLLNELYCSENKLPELHTRCNPMLKRLDYADNLIVEPDHTVKGMGTFQYDSSFCSYQ TALRYKDKELSVRADVPAKADMKRLSPVIRKTWERLDQLHEQAADLIARTHPDEDVTELV LSELVFDKDAAFRIGYDAGESPAGQLYIYAVFTRKHELNSQLVYETY >gi|333603670|gb|AFDH01000125.1| GENE 27 29899 - 30342 382 147 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_2773 NR:ns ## KEGG: GYMC10_2773 # Name: not_defined # Def: cell wall assembly/cell proliferation coordinating protein, KNR4-like protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 147 8 154 154 233 76.0 1e-60 MKKALMDRLKAFLHREDNSTLAGSPASQQEIAHAQQQLGVTFHEDYVHFIRTFGGAYAGL AVYAFSNGSSLGNETVIDLTLGYREQFKELPLAEVLRTGYVISMDGSGNPIIIDQSGQVI FCDHDTGEIKLLADSFEALIEEHFYEW >gi|333603670|gb|AFDH01000125.1| GENE 28 30447 - 31622 1041 391 aa, chain - ## HITS:1 COG:lin2278 KEGG:ns NR:ns ## COG: lin2278 COG1028 # Protein_GI_number: 16801342 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Listeria innocua # 2 196 3 197 253 233 64.0 3e-61 MRLEGKVAVVTGAASGMGKAIAELYANEGAKVVVSDLNVEGAEAVAAGIKANGGEATAVK TNVADLNDIHAMIDTAVTKYGTLDILVNNAGIMDNMAAAGDVDDDRWDLIFDINTKGVMR AIRKSIPIFLEKGKGVIINTASTGGFSGAHAGAAYTASKHAVIGLTKNTAFMYAQKGIRC NAIAPGATMTNIASTITNSMNETDLRVIKTKKALHQALLALLKTQSLEAITVSALCREAA VNRGTFYLHYTDIGALFDEHLHFLLQDLEDSYNEPYRHVVHVNPSELDPSTIRIFHHVKK FQSFYEIVFEKKSPLAYYYSLLAKIKSLMRTNSQVYPLGDRDLSLLVAYQANAIMGLLLQ WSEDGFARSPEYMNEQLTYFLRKPDKGSFSE >gi|333603670|gb|AFDH01000125.1| GENE 29 31821 - 32843 472 340 aa, chain - ## HITS:1 COG:lin1811 KEGG:ns NR:ns ## COG: lin1811 COG1680 # Protein_GI_number: 16800879 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Listeria innocua # 21 330 7 316 323 307 47.0 2e-83 MQKNDWPTAEWQAADPALVRLDPEKLAELEPVIRSEYSNINGVVIVRNGAIACESYYNGY GPDDTHHVASVTKSILSALIGIAIDTGFIKHVDQKVLDFFPEYVPDAADSQKREITLRHL LTMTAPYPFEDWHEPLDKMCMQPDWVKYTLDMLGQKGEIGTFKYSTAGAHLLSSILTRST GKSAREFANERLFRPIGMKEIPDYEMESFGFEDLFGKKVRGWVQDPNRISTGGWGLTLTP RDMARFGLLYLNRGLWNHHPIISGTWVNESTAMNANNYGYLWWLREEDGVYAYSAMGDGG NVICCIPEKDLVLAIASEFVAHPRDRWTLIKDHVIPAVLD >gi|333603670|gb|AFDH01000125.1| GENE 30 32882 - 33706 576 274 aa, chain - ## HITS:1 COG:BH3496_1 KEGG:ns NR:ns ## COG: BH3496_1 COG0789 # Protein_GI_number: 15616058 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus halodurans # 4 99 7 99 117 78 45.0 2e-14 MLSIGEFSKICEVSTKTLRYYDEIGLLHPDEINPENGYRYYSIRQLKKMLLINRLKSYHF SLEEIKAMLEMEGDQSEEKLCSALHRKRKEIQEKLTAFEYTLNQISTDILNVQKGIPIMS HLDRIEVELVETQPMNILYTRQMMSRDDFIRGYENYFGKLYEKIAVEKLTLLGTPMTIYH SSEYNPAGNDTEFAIPVGEFVKGTRDLPGGLCAKSVLEGAYSELTTVYARLMEWIENEGY RLVRSPYEVYVTDPTQAEDSDDIVTEVYFPVKKK >gi|333603670|gb|AFDH01000125.1| GENE 31 33913 - 34269 316 118 aa, chain + ## HITS:1 COG:FN1232 KEGG:ns NR:ns ## COG: FN1232 COG1733 # Protein_GI_number: 19704567 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Fusobacterium nucleatum # 3 109 4 111 113 155 69.0 2e-38 MRETCVPSGVALKDTGFGYTLSLIGGKYKMIIMYWLAENKVMRHNELKRSIGSISFKTLS VMLKEMEADGLILRKEFPQVPPKVEYSLSERGLSLLPLLNMMCEWGENNLPDPQAVQR >gi|333603670|gb|AFDH01000125.1| GENE 32 34348 - 34767 180 139 aa, chain - ## HITS:1 COG:FN1233 KEGG:ns NR:ns ## COG: FN1233 COG2249 # Protein_GI_number: 19704568 # Func_class: R General function prediction only # Function: Putative NADPH-quinone reductase (modulator of drug activity B) # Organism: Fusobacterium nucleatum # 1 108 53 160 180 145 57.0 3e-35 MEREQQLIESHGNLVLQFPVYWFNCPPLLKKWLDDVLAYGWAYGSNGDKLRNRKAALAVS VGIKEEDYREEGKYRYTLEQLLTPFETTFRYCHADYRSFYAYYGTETEPGENEPGAENEP PANNLDKSAQKYVSFIDHL >gi|333603670|gb|AFDH01000125.1| GENE 33 35122 - 36024 890 300 aa, chain - ## HITS:1 COG:ECs3887 KEGG:ns NR:ns ## COG: ECs3887 COG1028 # Protein_GI_number: 15833141 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Escherichia coli O157:H7 # 9 296 4 290 294 333 61.0 2e-91 MPEQDQYKVQDPTAQYPKPTPEWKQKQPEPGLQKKMTPVPDAGETSYRGTGRLTGRKAVV TGADSGIGRAAAIAFAREGADVLLSYLPEEEADAQEVVKLIEEAGRKAIAFPGDLKDEQY CEQLIATAVDKLGGIDILANVAGMQQFVENIADLTTEQFDATFKTNVYSLFWLCKAAVRH MKPGGSIINTSSIQAYKPSPILLDYATTKSAINTFSKALAQQVASKGIRVNVVAPGPVWT PLQVAGGQPTEKLAEFGTNTPLGRPGQPAEMAPAFVFLASQESSYISGETLNANGGTPTP >gi|333603670|gb|AFDH01000125.1| GENE 34 36237 - 36716 296 159 aa, chain - ## HITS:1 COG:MK0504 KEGG:ns NR:ns ## COG: MK0504 COG1335 # Protein_GI_number: 20093942 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Amidases related to nicotinamidase # Organism: Methanopyrus kandleri AV19 # 4 136 3 152 177 57 29.0 1e-08 MNIALLIVDMQMDFLQDRPVATASAYINHTAQILRSGGHQVIHIQDVEEAGTISPERLEF IPEIQVEKDDLVVKKTFSNAFWRTDLEQILLDRQIGLVVIAGFDAGNCVLFTYNGAIERG FKAAILQNGILSAKEDLIALTYRDRHVISYPVIEFMVQS >gi|333603670|gb|AFDH01000125.1| GENE 35 36821 - 37405 238 194 aa, chain - ## HITS:1 COG:RSc0635 KEGG:ns NR:ns ## COG: RSc0635 COG1309 # Protein_GI_number: 17545354 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Ralstonia solanacearum # 1 167 29 193 216 73 30.0 3e-13 MRERKKRQAQAAIEEAALRLFQQKGYEQTSIQDIADAVTMSPRTFFRYYASKEEVLSGLI HTIQSDGVRTLMHVASTASPHTALREVFGYLAGRYQEQRSNLYIRHQIAMQTPPMASLFL YALLETEPAICEAVCSRLEPARDRNEMRFLVAVYMAALRVSLEEWLEHEESRDLVSLLYS HLDCFSTEPKRTDE >gi|333603670|gb|AFDH01000125.1| GENE 36 37337 - 37816 88 159 aa, chain + ## HITS:1 COG:BS_cypA KEGG:ns NR:ns ## COG: BS_cypA COG2124 # Protein_GI_number: 16079727 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Cytochrome P450 # Organism: Bacillus subtilis # 29 159 280 410 410 117 43.0 1e-26 MLKKPERRFFNGSLCLTFLAFPQASDLSLVPSAVEELLRFNGPATIAGPRFATEDLKLAG QAIRKGDIVIPVLKSANRDENQFTQPEELDITRTIHRHLAFGQGIHMCLGAPLARVEGDI AFTTLLRRLPNLRLSVPRESVAWSFTLSSQGITSLPVAF >gi|333603670|gb|AFDH01000125.1| GENE 37 38073 - 39521 779 482 aa, chain - ## HITS:1 COG:BH1306 KEGG:ns NR:ns ## COG: BH1306 COG0753 # Protein_GI_number: 15613869 # Func_class: P Inorganic ion transport and metabolism # Function: Catalase # Organism: Bacillus halodurans # 51 479 33 501 533 300 36.0 4e-81 MEGNNGRFQSDATSPRSGSPQRSSAQHVPREEPPRGHIPAQGAGNIPAAFHSQTVGERGP VLEQDNILHETLETFVHTKIIERPVHVKGSGAFGYFQNVHSMAAYTKLCFLQSPGQQVPV TVRFSLAVSNKGTPDTSRNVRGFSTKFYTEQGVFDLLCNHIPVFSVRDAIRFPEFVQAFL PSPVNNLIDPERMWSFVARAPESTHFLVRLYSDAGTVKSFRHIPGHSVNTYVWRNAQGVR TYVKYHWIPFAGVQVIDRHEAARLSENPDLAGQDLFDTLAAGNTVEYGLHVQLMNPDDEA KLPFDPLDDTKVWDERQYPLVPVGRLVLNRNPDNYMDQVEKIAFSPSNLLDGAELSDDKL LQGRANIYWDSQRRRLGPDFRKIPVNHQENWSPDSLVTSGSGRYVEGRLVRTDLPEPDNF TQAGQYYRALPPVQQEHLVDNLSADLAGISQGTQSIVLNYLYHASAELGERVARHIQMQT KG >gi|333603670|gb|AFDH01000125.1| GENE 38 39767 - 40276 649 169 aa, chain - ## HITS:1 COG:BH0695 KEGG:ns NR:ns ## COG: BH0695 COG3832 # Protein_GI_number: 15613258 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus halodurans # 1 169 1 169 169 221 62.0 5e-58 MTNPITSKVEDKTLTLERVFKAPRELVFEAFSQAEHLKLWWGPRGWSIPVCSIDFRVGGV WHYCMKCEDKNQGEFYGMESWGKAVYSEIQAPEKIVYTDYFSDAEGGIAETMPTTVCTLT FTEVEGGTKVVSRGEYATAEGLKQVLDMGMLQGITETWDRLGEHLESIQ >gi|333603670|gb|AFDH01000125.1| GENE 39 40312 - 40650 327 112 aa, chain - ## HITS:1 COG:BH0694 KEGG:ns NR:ns ## COG: BH0694 COG0640 # Protein_GI_number: 15613257 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus halodurans # 1 105 1 105 109 123 63.0 7e-29 MDARVMSALAEPNRLLILELLRECPLTVGEIAERLQMRQPQASKHLRVLSEAGLVKAQAD ANRRIYSLQPDPFRELDEWLESYRVIWEERFDRLDDYLQKLQGRETGEDRQD >gi|333603670|gb|AFDH01000125.1| GENE 40 41037 - 41414 327 125 aa, chain + ## HITS:1 COG:no KEGG:PPE_03823 NR:ns ## KEGG: PPE_03823 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 1 125 1 125 125 103 52.0 3e-21 MPFSTGLITNTRDVGTASSNIVMNVRNLDTTNPVTVTVQVFASVNSTTFYTAYLVTYVVP ANSYNVREFFIAGNVSYEVQINTASVATPNALLSVFGIDGFGNLVTDQRILQSELSVISS LSPIM >gi|333603670|gb|AFDH01000125.1| GENE 41 41544 - 42332 603 262 aa, chain - ## HITS:1 COG:no KEGG:BMQ_pBM70018 NR:ns ## KEGG: BMQ_pBM70018 # Name: not_defined # Def: hypothetical protein # Organism: B.megaterium_QM_B1551 # Pathway: not_defined # 1 262 1 262 262 300 64.0 3e-80 MNTFYVLVKKEGVQMIRELKVIWLPVVFILLGMTQPIVTHYLPSILGTLGSGKGITIDPI MAAQKGGEVLAGTLGSQFDQLGLIILAVSMMGMIQSEKANGMLAFILTRPVTVRTYLAGK IITHYLMAAFSVAMGYFVSYVYVHFLFTKVPFFQMMTALLLYLVWICFVTSFITMLSTLF NSQSMIALTAIVLLIGSRIMAGISPIVDLINPASMSKLAMELLIAGSMPSREMEHTLVTL VWITLILFVTNYWISGKKINSD >gi|333603670|gb|AFDH01000125.1| GENE 42 42333 - 43235 344 300 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|225084369|ref|YP_002657150.1| ribosomal protein S16 [gamma proteobacterium NOR51-B] # 3 298 9 305 309 137 29 3e-31 MKLEIKHVKKAYKDKIAVNDFSMELSTGECVGLIGPNGAGKSTLLKMITDMIKPDEGEVL LNGNKIAQMKREIGYLPQYPNFYHWMTARETLAFMGQLSGLQKEELIHSIPEILAKVGLR EVGNSKVGTFSGGMKQRLGIAQALLHKPALIVMDEPVSALDPIGRREVVNLIRDIKQDTT IILSTHILSDAEEICERFVMISNGIKIEDTTIAELFARSNKNKLSIQCTAKDLKWIDVAK KLPYVREIEVTGNRIDIEVENIQTDKNRVLENALVHEVDIVKFEIHTDTLEEIFLQLVVK >gi|333603670|gb|AFDH01000125.1| GENE 43 43232 - 43471 242 79 aa, chain - ## HITS:1 COG:no KEGG:BCA_3385 NR:ns ## KEGG: BCA_3385 # Name: not_defined # Def: hypothetical protein # Organism: B.cereus_03BB102 # Pathway: not_defined # 1 79 1 79 79 99 69.0 3e-20 MQLHYGFDELKEIDFMAFIPMLLPFLAIGTLLVLIALIDLYRHRTTRKSVLLWTCIILFV HTLGPILYFVLGRKDDVKL >gi|333603670|gb|AFDH01000125.1| GENE 44 43620 - 43817 85 65 aa, chain + ## HITS:1 COG:no KEGG:BCAH187_A3321 NR:ns ## KEGG: BCAH187_A3321 # Name: not_defined # Def: hypothetical protein # Organism: B.cereus_AH187 # Pathway: not_defined # 1 65 1 65 180 94 76.0 2e-18 MANKAEILMHPVRMKISQVLMRNKDTGLTSLEMVKIIKDVPQATLYRHIQVMSDAGILRV LKEKK >gi|333603670|gb|AFDH01000125.1| GENE 45 43826 - 44158 358 110 aa, chain + ## HITS:1 COG:no KEGG:BMQ_pBM70015 NR:ns ## KEGG: BMQ_pBM70015 # Name: not_defined # Def: hypothetical protein # Organism: B.megaterium_QM_B1551 # Pathway: not_defined # 2 109 71 180 181 138 69.0 7e-32 MEKYYVLNELEAKLNVEEWKKASHEKKLDYVSYYQLSLMTQYQTYLKKIEEQNTREDGAT FSLVEMKLDEEQFSQFQNELNELMTKYYHSAGKDTNAPVRTIAFTIIPDA >gi|333603670|gb|AFDH01000125.1| GENE 46 44280 - 45257 233 325 aa, chain - ## HITS:1 COG:no KEGG:BPUM_0760 NR:ns ## KEGG: BPUM_0760 # Name: not_defined # Def: hypothetical protein # Organism: B.pumilus # Pathway: not_defined # 47 318 2 274 394 172 32.0 2e-41 MEQIRKLKEREAPLETSVSELIELYDELIESAEKKAAWDPVPTCTRVHFVVGYSFAGSIK AALKQLNWSGTHKVITLSENYAIGPIHGLDSYEGRKARRDWFQDHITEPFEVCDDPEEDY GQLLERVNKIPEQAKVIVWTSRNACEQTGMLHAFRLLSGRSNSLALYDACTICEELDNRP NATISYRHSGEIPSDKLQAALVRMDDSSFLKDADKARLEQEWQTISKQSGALRIWRDGAV TEVPDDYYDMYLLDKLDKLRPASDSRYLKAARLIGEAMGCCEQYIGDAYFEFRLRQLIYE GILEIKGVPSSMRRYSVRRKKLSSN >gi|333603670|gb|AFDH01000125.1| GENE 47 45267 - 45449 155 60 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNDETNKEILKELRNLNEKIDHLIAAKGLSAPLKLLAVFIGFAVIGPIVVVILSALLNLF >gi|333603670|gb|AFDH01000125.1| GENE 48 45611 - 46366 335 251 aa, chain - ## HITS:1 COG:ECs4801 KEGG:ns NR:ns ## COG: ECs4801 COG0730 # Protein_GI_number: 15834055 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Escherichia coli O157:H7 # 4 245 17 251 291 95 32.0 7e-20 MTFSLIALVVAAVFVGAFMKSMFGFGEAIVSMPLLALLPVPLQTSVSLIGLAGLTVALLT VFSGWRHVERPVLIRLAVSTVIGIPFGLIMLHLIPAIVITSALGIFLIIFGCYSLLKKLL SRKIGRPLLHNRGWVLPFGFASGVLGSAYNFNGVPVVVYGTLRRWNPDRFRGTLQAHFLI SGLLVVTGHALGGLWTADALVLYAYSLPAILAATGLGVLLNKRISAENFERYLFMIIIAL GILLILPSGSN >gi|333603670|gb|AFDH01000125.1| GENE 49 46726 - 47784 504 352 aa, chain - ## HITS:1 COG:BH3677 KEGG:ns NR:ns ## COG: BH3677 COG2072 # Protein_GI_number: 15616239 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted flavoprotein involved in K+ transport # Organism: Bacillus halodurans # 1 346 1 347 350 350 48.0 2e-96 MNHVEVIIIGGGQAGLAMGYLLKRKGVTFFILDAHKRTGDSWRSRYDSLTLFTPRMYSSL PGMKFPGVPEGLPAKDETADYLEAYAKAFALPIRHQTNVYSLTKHEFGFKIETGQETFTA RQVLVATGPFQEPVIPDFAKKLPKEIVQLHSSSYKNESQLADGPVLVVGGGNSGAQIAVE LSDRRPVTISVSRPMHFKPMQLFGRNIFWYFETFGLLKANAESPLGSWLKKQPEQVYGTE LKSLLKKRIVSLKQRAIDADSAEILFKDKSRMKVSTVIWATGFRNAYPWIDIPEAVDVNG KPIHRSGVSKVKGLYYLGLPWQSCRGSALLGWMGRDAEHLAEVIEQHAERSG >gi|333603670|gb|AFDH01000125.1| GENE 50 47821 - 48330 367 169 aa, chain - ## HITS:1 COG:BS_yvkB KEGG:ns NR:ns ## COG: BS_yvkB COG1309 # Protein_GI_number: 16080573 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus subtilis # 2 165 25 186 189 97 34.0 2e-20 MTTRAIAKAAGVNESTIFRHFVNKQGILDALVDRYSYVPGIHQVFDSLMGELQSDLTHVA RAYQEFMKHNGEMVLIGLRETGQFPELDEKTAAIPIQLKELLVDYLTRMYENGVIQRTDF EASAMTFIWMNLGYFISASLYGQKITLVKVEDFLQFGVRTFAQGLLKGH >gi|333603670|gb|AFDH01000125.1| GENE 51 48668 - 49219 -191 183 aa, chain + ## HITS:1 COG:CAC1571 KEGG:ns NR:ns ## COG: CAC1571 COG0386 # Protein_GI_number: 15894849 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutathione peroxidase # Organism: Clostridium acetobutylicum # 1 181 1 181 181 194 49.0 1e-49 MSIYDFQVNTINGNLIELSIYRGKVLLIVNTASRCSYSRQFAGLQKLYESHNERDFEILC FPCNQFNEKEPGSNSEVQEYCESNFGVTFPLFEKMEVRGQKTHPLFQFLTEQAPFHGFNT QTSDGQKMQNFLQEKYPDLYAGDGIKWNFTKFLIDQNGQLYGRYETTTEPFEIEPIIKSL LLK >gi|333603670|gb|AFDH01000125.1| GENE 52 49367 - 50080 514 237 aa, chain + ## HITS:1 COG:CAC0632 KEGG:ns NR:ns ## COG: CAC0632 COG0637 # Protein_GI_number: 15893920 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Clostridium acetobutylicum # 14 221 2 210 215 174 43.0 9e-44 MKDLNKSEWKAASIKAVLFDMDGVLIDSEPIYFDIERSSFDHFGVPVSEEDHHSFVGVTL ESMWEQILDKHRIPFALEQVLTYHKDNVMTILSGHTELTAMPQAERWLSWLKEKQIPVAV ASSSPRPLIELIMDKTGLGRYLDVRVSGEEVNHGKPAPDIFLHAAGLLGVEPSSCLVIED SRNGVIAAKSAGMRCIGLQNPGSGNQDLSLADHRVSSFEELWALKDSLPFAPLSSLT >gi|333603670|gb|AFDH01000125.1| GENE 53 50253 - 50564 329 103 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_2926 NR:ns ## KEGG: Pjdr2_2926 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 1 102 1 101 102 127 66.0 1e-28 MSQRYRITRAFQENGNSAKTISLEECKQLFSSKADFTYTTVFTVNGATSMSIEGDFFMWS YDEDTKIPFRHYEGDIYVSGTNKVVIPLVIEIASELGADVQEE >gi|333603670|gb|AFDH01000125.1| GENE 54 50629 - 51858 871 409 aa, chain - ## HITS:1 COG:YOL137w KEGG:ns NR:ns ## COG: YOL137w COG0738 # Protein_GI_number: 6324435 # Func_class: G Carbohydrate transport and metabolism # Function: Fucose permease # Organism: Saccharomyces cerevisiae # 11 275 86 361 497 65 25.0 2e-10 MATFFLLIIYMAFISLGLPDSLLGSAWPVMQTDLGAPLETAGLLFMTVTAGTIVSSMASG TLLKWFGTGKLTLISCIMTACALLGFAAAPSLVWLMICAIPLGLGGGAVDAGLNNYVAAH YKAHHMSWLHCFWGVGATLGPIIMAQFISGPDSWRDGYLTVAGIQFALVILLFVTLPLWN RVARNNHAALGKETEDPHGAGDEHSESSIKPLQIRGVKLALVTFLFYSGAEATIGLWGSS FLVSMKELPAAVGAQWVSLYYAGITVGRMVTGFITFKVSNRTLIRCGQITALAGAALLIL PLPPVFSLAGFMITGLGLAPIYPCMLHETPVRFGRKHSQSIMGYQMAVAYVGSTFMPPLL GFLASLFGIGVFPFYIVLSAAAMLLFSEKLNVFLTARKNALKNNTTFTG >gi|333603670|gb|AFDH01000125.1| GENE 55 51862 - 52890 640 342 aa, chain - ## HITS:1 COG:lin0520 KEGG:ns NR:ns ## COG: lin0520 COG1940 # Protein_GI_number: 16799595 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulator/sugar kinase # Organism: Listeria innocua # 12 337 7 325 334 103 25.0 7e-22 MSELPPTSNDSMKKAILRSIRAALLELGSATKVELSHKLGISFPTVSKFLTQMAKDGEIF STGLDGSSGGRRAERYAYNPDCMLGLALFLEKTETNYTIFNCSGDIKEYGQTSGVLTGPI PGLTDQIGRIIAKYPKIRSIAVGVPGAVNNGRIIYIPGYEQFHQFDLKSYFEERFSIPVA VENDMNAAILGYHLKGTQTDNPTLIYLNFGQNGPGAGILVNGDVVRGSTFFSGEVSFVPQ YDDRNFLQALEREAGSEEEALREKEIDAVSRLIASFTAILNPHAIIFCVNEVSGSLLNLI ASRSAAYIPEEHLPELCTSDWKQDYLNGLQHLGLDLMMWEKR >gi|333603670|gb|AFDH01000125.1| GENE 56 53560 - 54186 59 208 aa, chain + ## HITS:1 COG:lin2073 KEGG:ns NR:ns ## COG: lin2073 COG0614 # Protein_GI_number: 16801139 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-hydroxamate transport system, periplasmic component # Organism: Listeria innocua # 2 180 102 283 313 90 34.0 1e-18 MILSLKPDLIINSYHNADAEKNKAFSKIAPTIPFNPALPYAERVKEMGNIFGQQEKAAQL IAKFETQSKEMFDKLQLADGETATVFYQLGKTLYVMGNRSLGAVIYGENGFAIPPAVRKN IIDQKGVSFVKVSEEVLPEFAGDHLFVLVQDNGESKTESDQLLQSPIWKTLPAVQKGNVY VVSAEWNTDGLLALEQLFKELPQWMRRP >gi|333603670|gb|AFDH01000125.1| GENE 57 55308 - 55997 170 229 aa, chain + ## HITS:1 COG:lin2073 KEGG:ns NR:ns ## COG: lin2073 COG0614 # Protein_GI_number: 16801139 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-hydroxamate transport system, periplasmic component # Organism: Listeria innocua # 3 170 79 247 313 81 29.0 1e-15 MKDNVIYHNKLRNIQNIGYWADPDKIAQLQPELLLLSYFHPEQDLQKLDAIAPTVILNSK FRLFERLRYIAKLFERSKAAEKWITTYEDKVRLVRRQLANAYVAGETAAVYLKLGAKLYV MGHSGFAATLYESLGFRPSAKVMHLIEQGQSWIEIQQHQMNHFAGDRNFILASPLELQTV VAHRPQIEAIAELTPGKIHFMDATWNYEDPITRGRLLEVLPYIFKKKIM >gi|333603670|gb|AFDH01000125.1| GENE 58 56095 - 57150 798 351 aa, chain + ## HITS:1 COG:BS_ycgT KEGG:ns NR:ns ## COG: BS_ycgT COG0492 # Protein_GI_number: 16077396 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Thioredoxin reductase # Organism: Bacillus subtilis # 1 339 1 333 336 350 51.0 2e-96 MTQALELYDITIVGGGPAGLYAAFYSGMRDLKTKLIEAKEELGGRLLIYPEKMIWDVGGV TPIRCEHLIQQMIQQAHTFDPTIVLGQQISGLERLEDGTMLLTAVTGEQHHTRTLVLALG YGVLKMAKLDIEGAERYEVTNLHYTVQELESFHGKRVLISGGGDSAVDWANALEPIAASV TVVHRRERFGGHEKNVKRMKESSVDVRTPYAVDRLHGNVSGDAIEAVSIARVNAEGFLME ETEQLVIDAVIVNHGLRGDFGSIVDWGMDMGQWNINVNEKLATNLPGIFVAGDTANYPSK VNLIAGAFTDAVLAVNSAKLYLEPAAAKTAYVSSHNAKFKERNKALGMTDA >gi|333603670|gb|AFDH01000125.1| GENE 59 57500 - 58168 514 222 aa, chain - ## HITS:1 COG:no KEGG:BMD_3778 NR:ns ## KEGG: BMD_3778 # Name: not_defined # Def: transcriptional regulator # Organism: B.megaterium_DSM319 # Pathway: not_defined # 21 215 19 213 213 202 52.0 6e-51 MEALDPPKESTIGELIKVQLKKQSLSMRKLSSLCGMDTATISRIVNGKQEPKLIHLKLFS EYLDLSLDRLIEASGYRVNPGKQTGHSHIYHSLGMLLELFGDSSVSDLKATTGRIEQELA KYELYAQTEEGHRLICREFDTKLAQVNGVGPLIDQLKEMYTLYSAKSSSETHQAILGSAL LYFILSADIIPDYLFPIGYVDDAMAVHLVLDRLSQRGFPHKL >gi|333603670|gb|AFDH01000125.1| GENE 60 58345 - 58968 512 207 aa, chain + ## HITS:1 COG:CAC0130 KEGG:ns NR:ns ## COG: CAC0130 COG1971 # Protein_GI_number: 15893426 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Clostridium acetobutylicum # 1 207 1 199 200 88 31.0 1e-17 MAWLLILGFAISSSLDNLGVGISYGIRKIRIGILSNLIVAAVCFLFSYTGIWFGKWISSV LPGMLPVLLGAFSLFFIGIRIILMATPGKEPEIAPSQSNRNGLRGILQNPEQVDRDNSKH IGIAESFILGIALSANALTNGLSAGLLGLSPFAISLTAAFGSFLTVWLGVWLGGKVAGIR IGSFTLGQFGTLVSGMMLLVIAANSLL >gi|333603670|gb|AFDH01000125.1| GENE 61 59552 - 59974 84 140 aa, chain - ## HITS:1 COG:no KEGG:BcerKBAB4_2408 NR:ns ## KEGG: BcerKBAB4_2408 # Name: not_defined # Def: hypothetical protein # Organism: B.weihenstephanensis # Pathway: not_defined # 1 140 1 140 140 153 57.0 2e-36 MKLVMTLSTVSILALISILHIYWAYGGRWGIGAAIPSKAGEYKPAFKPGKSGTLFVAVLL LMVCFILLMQGGYIDQFPANPLSRTGCIVCASVFFLRAVGDFRHIGFFKKVKHTVFARND TWLYSPLCLYVALTCTILLF >gi|333603670|gb|AFDH01000125.1| GENE 62 60121 - 60234 63 37 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNILYLIMAIMIMLLGILHIYITPLRRSPVYWIIFAM >gi|333603670|gb|AFDH01000125.1| GENE 63 60357 - 60872 339 171 aa, chain - ## HITS:1 COG:all3728 KEGG:ns NR:ns ## COG: all3728 COG1309 # Protein_GI_number: 17231220 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Nostoc sp. PCC 7120 # 1 151 14 167 192 95 35.0 3e-20 MQVTREDWVKAGLNKLGEAGIHEVRVEVLAKALKISKGSFYHYFRDRKELLDSMLDYWED HATKRIIRNVEQDNSSLEQLLNLSINNRDKKMEIGIYAWAKHDPIVASRLVDIEEQRIHF ISVLYQKRGLTHSEAADRSRLTYLTYVGWMTRFESNTNFDIVKMFEILLKL >gi|333603670|gb|AFDH01000125.1| GENE 64 60971 - 61942 432 323 aa, chain - ## HITS:1 COG:no KEGG:BL02711 NR:ns ## KEGG: BL02711 # Name: not_defined # Def: kinase-like protein # Organism: B.licheniformis # Pathway: not_defined # 11 319 4 309 315 293 46.0 8e-78 METESLKLARLTKLVTEHYHLEPISISRQQGGWASLAYRIETPSNTTYFLKEYEKKRSST PKLTARLDKYIPVTCWLNENTDLAGKIPVPLKTQSGEYVCENADGIFLLYEYIHGETIGE KALNQAQIEQLTHILAELHKVGNSIPVPAEHLTEDFHVPFMNALNETMAARHLPPRLRSA IKPYENVLFEHLSILQELSSKLAGRMLPLRWCHTDIHPWNMMQSDHQLILIDWEGLKLAP VEADLMFLTDETYFHDFFALYKKIHPSYIIDEEALRFYKIRRLLEDIWEFTEQFLYDEQS EPEKEGTLKQLIHELDALKRWGR >gi|333603670|gb|AFDH01000125.1| GENE 65 62126 - 63313 644 395 aa, chain + ## HITS:1 COG:lin2916 KEGG:ns NR:ns ## COG: lin2916 COG0477 # Protein_GI_number: 16801975 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 3 388 7 389 396 325 51.0 1e-88 MLTKKISTPSILLFIILVGFPQISETIYTPSLPDIADHLQVSRNLIQLTLSIYFLGFALG VFCWGRLSDSIGRRPALLWGILVYGLGSLGCYLSGTAEWLLVSRFVQAFGASTGSVVTQT ILRESIDGAKRHAVFAQISAALAFTPAIGPLIGGWVDQALGFRAVFLTLVIMSAAVFAYT FAALPETKGAVTTNIKIRSVFRRMIGDRKLWAFGFLIGATNGLLFSYYAESPFIFMEYFR LTPGEFGIFGILVALSSILGALLSKKLLTRFTAEKIIVAGTVLSAVGAACMTAIVLYKAS PSAIFLILLAVCIFIFLLGIGMAIPNCLSLALVRYSDVLGTAGAIFGLGYYILVSLITSG MSYLHNDSLLTMPLYFLVLSLIMVFVSKKLQLPVK >gi|333603670|gb|AFDH01000125.1| GENE 66 63424 - 65808 1940 794 aa, chain - ## HITS:1 COG:SA1352 KEGG:ns NR:ns ## COG: SA1352 COG0142 # Protein_GI_number: 15927102 # Func_class: H Coenzyme transport and metabolism # Function: Geranylgeranyl pyrophosphate synthase # Organism: Staphylococcus aureus N315 # 513 794 11 293 293 150 37.0 1e-35 MNQTFTGQPETWYRLAEQRAAQYFTSLYEQVKEKSYVPVLTEDIRVWKKDHIPPFSLFPF LSRRKRRPDSRDYSRYIQWLRYTGKLDDYLDRSISYIYLRDLGQALDAPATQKKVLGLIG DIKNQLMDSGKADGGDQPNYISWAGLYRWAQKEGIETAAIWLITKLKNVSSRIPKEMNAE QAQRKLLKIILGVILHVDDDMDDETPPDERSRRLDEAIRLGYSYGLTYPFIDDLLDSGIL TDLEKEQFTGMIRNALLTGSVPELGDWSDNNRTLLEFVHAELRDAFQSIQAYQRPETLRT FYEQSYVFFHSQELDRIKDLSCESYTNEELYVPIILKSSSSRLIVRSVLSADADEGFDNR TFYYGIYNQLADDFADMFDDRKDGAVTPYTYYLKYRDRRPDLINPYELYWTVISHLIHNV YRSDAKTREVILDRAINGLKRCRERLGADKYNEIMEIFASGDPEFNRLVQTMVSKADDVD FFDKLLRDQVVTVLQNNRREKEAFSDTIRTVRDQINSFLHISKPHGMPGMKEALIDAANY SLEGSGKRIRPILTWVMGVNEYGLKAEEIVPLLRSLEYMHTASLIFDDLPSQDNASTRRG RPTLHQVHNIATAELTGLYLIQKATQEQTSLDRFPAKSVLALIRYSAEKTEEMCMGQAMD LQARGKALTLEQLNRICFYKTGIAFEAALVMPAILAEVPAPEMEALKKFAYHAGIAFQIK DDLLDAEGNLDVLGKPAGKDIENNNSTFVTILGEDGAGKEMWEHYCLATETLKEIPRNTA FLKHLLTYIVGRDH >gi|333603670|gb|AFDH01000125.1| GENE 67 65983 - 67689 1027 568 aa, chain - ## HITS:1 COG:DR2379 KEGG:ns NR:ns ## COG: DR2379 COG1132 # Protein_GI_number: 15807369 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Deinococcus radiodurans # 3 565 22 585 588 568 51.0 1e-161 MTYYKPYKKVLFADLIFAALASMCALAFPMLVHFMTSSAISEEGIAAALLVKMIAVFLFL MAVEYGSGFYTDYYGHAMGAAMEADMRNDLFRHVQSLPFSFHDKTATGQLMSRATHDLFN ISELAHHGPEDLVISFVRIAGSALILWLLNPVLAMTLLAILPFMVLFAYNYSIKVKEALK RNNERIGDLNAQLEDSLAGVRVVQSFANEEIETAKFKASNELFLGSRKKGYKAEALFFNG LTSFMSLMNIAVVVAGALLISNNMLLLTELITFLLYINTITDPVKRLVNFTQNLQNGAAG FERFVEILSIKPDITDSEDAVTLNRVRGKIRFENVGFRYSGDHSPVFSHLNLTVFPGETV ALVGSSGVGKTTLCRLIPRFYDPCEGHVYVDDLNIKDVELKSLRSQIGIVQQDVYLFAGT VRDNIRYGKPDATEEEIIAAAKLAHAHEFITGLPGAYEAFVGQRGSKLSGGQKQRISIAR VILRNPAILIFDEATSALDNESEKIIQHRLETLARNRTALIIAHRLSTIRNADRIVVLTE QGIAEEGTHETLMRQGGTYAKLNNMQSN >gi|333603670|gb|AFDH01000125.1| GENE 68 68000 - 68497 423 165 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_4987 NR:ns ## KEGG: GYMC10_4987 # Name: not_defined # Def: DinB family protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 165 1 165 165 286 86.0 2e-76 MDKQLIIGDAAHELAHTRRILERLPEEHMSWKPHEKSMTLGGLATHLINLLNWQIAIFQY PEFDLSTVALRREPLEKRADILEEFDANVDRFQKLLAECDERTLGEEWTLRNGSHVILRE PRAIALRTFGVSHMVHHRAQLGVYLRLLDIPVPGFYGPSADDEAR >gi|333603670|gb|AFDH01000125.1| GENE 69 68860 - 69540 546 226 aa, chain + ## HITS:1 COG:CAC1386 KEGG:ns NR:ns ## COG: CAC1386 COG0491 # Protein_GI_number: 15894665 # Func_class: R General function prediction only # Function: Zn-dependent hydrolases, including glyoxylases # Organism: Clostridium acetobutylicum # 3 224 23 243 243 165 41.0 7e-41 MTIHPVILFDQESWTLIDTGMPGSAPAILELARQAGTGELPLRSIVLTHQDIDHIGGLPG ILAATGGSAPVLAHPGDEDAINGTQPMLKMTPERLAGFLEQVPADVREQFERTFLNPQRP NVDRTLADGETLPYGGGLTVIHTPGHTPGHVSLYHSPSKTLIAGDAMIAKNGELSGPNPT VTPNMEQALESLKKFAAFDIDRVICYHGGLVQGGVNESIARVARQS >gi|333603670|gb|AFDH01000125.1| GENE 70 69747 - 70316 154 189 aa, chain - ## HITS:1 COG:lin2279 KEGG:ns NR:ns ## COG: lin2279 COG1309 # Protein_GI_number: 16801343 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 1 169 1 175 187 79 29.0 3e-15 MDRRIQKSRQAIMDAFMRLMSEKDFESMTINQIAEEANVNRGTVYLHFADKYDLRDQCVE AQLNQLQLSCMPEEGLVLLTSKTALLRTFEYLEQHASFYSIMLTSKGSAVFRNQLETMFR QSLSMVSISLDRELNRDITVQFLISAGVGLLEWWITRSMPYPPSVMVEQYWKLLNRFQLQ MFEENSVLE >gi|333603670|gb|AFDH01000125.1| GENE 71 70489 - 71469 566 326 aa, chain + ## HITS:1 COG:lin0622 KEGG:ns NR:ns ## COG: lin0622 COG0604 # Protein_GI_number: 16799697 # Func_class: C Energy production and conversion; R General function prediction only # Function: NADPH:quinone reductase and related Zn-dependent oxidoreductases # Organism: Listeria innocua # 1 324 1 312 313 209 38.0 7e-54 MKAIALTSFGIPEVLEELEVPIPTITNTQVLIEMRVSSINPADILLRNGAILKSPMADKF PAQLPLVLGNEVAGIVKEVGEKVRHFKPGDRVMGMVPMGSYMDYVAVEEDHLALIPESLS FEEAGAAPAVALTAWQALFEHGRLQPGQRILVQAGAGGVGHAAVQLAKQHGAYVIATARD YNHDFVKGLGADEVFDYTKVDFATQITEPVDLVLDSAMDQSTFGTGLPGDIGKKNYSVIK DGGTYISLVAFAINQYPKVRDIDAYYFQARPNRPDFESVVRHMKENKLSIYIDETYPFTA QGLLKAYRKSEEMPKRGKIVLSKNMV >gi|333603670|gb|AFDH01000125.1| GENE 72 71725 - 72075 355 116 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_0938 NR:ns ## KEGG: Pjdr2_0938 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 6 116 4 114 114 139 63.0 4e-32 MTPTNQEVTDFIEALKEQWQKELSAGLREVVRQAIPDVAERIQYKKPHFLKNGKYAAVIS TSKDAVSFTIFNATDLQLPEGMFDGPPERKTLKLRKGETFDSGLLVPLVVQASSAL >gi|333603670|gb|AFDH01000125.1| GENE 73 72089 - 72523 172 144 aa, chain - ## HITS:1 COG:RSp0637 KEGG:ns NR:ns ## COG: RSp0637 COG3795 # Protein_GI_number: 17548858 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Ralstonia solanacearum # 1 120 1 118 143 79 38.0 2e-15 MRFMLIVKATSYSEAGVKPGREYAEAVAAYRKSLAEAGVLLAAEELRPSSSGIRIGYSPN GEEPEFEAGPFQTGQGLLAGYTLIEVNSEQEAVNWARQMPVPPGLGTFGIEVRELTEQSN RAKEPMNRALEADLKNQLDMLKHT >gi|333603670|gb|AFDH01000125.1| GENE 74 72632 - 73897 803 421 aa, chain - ## HITS:1 COG:RSp0636 KEGG:ns NR:ns ## COG: RSp0636 COG4941 # Protein_GI_number: 17548857 # Func_class: K Transcription # Function: Predicted RNA polymerase sigma factor containing a TPR repeat domain # Organism: Ralstonia solanacearum # 7 418 9 423 424 454 64.0 1e-127 MTQSSAHRTIDAIWRIESAKLIAGLTRMVRDVGLAEDLAQDALVIALEKWPLSGIPDNPG AWLMTTAKRRAIDLLRRTKVRDRKYAEMAQRMDLYTEEDLNPTLDGEIGDDLLRLIFMTC HPVLSQEARVALTLRLLCGLTTDEIARSFLAAESTVAQRIVRAKKTLSTEKIPFEVPAGE ALKERLSAVLEVIYLMFNEGYSATSGEDWIRPLLCQEALRLGRVLAEIAPGEGEVHGLVA LMEIQSSRFRTRIGAAGEPVLLMDQNRAQWDRLLIRRGLAALERSRKLGRPLGPYALQAA ISACHAEALNAAETDWIRIAALYEALSRAAPSPIVELNRAVAIAMAFGPAFGLQIVDELS GEPALKGYHLLPSVRGDLLVKLGRLGEARAEFERAASMTRNARERDLLLSRAAECRTDTA E >gi|333603670|gb|AFDH01000125.1| GENE 75 73894 - 74328 589 144 aa, chain - ## HITS:1 COG:PA1354 KEGG:ns NR:ns ## COG: PA1354 COG3795 # Protein_GI_number: 15596551 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Pseudomonas aeruginosa # 1 121 1 118 141 126 58.0 1e-29 MRFMMIVKATTDSEAGAMPSQELIEAMQKYNEELVKAGVLLAADGLQPSSSGIRISYPEP GGKPKVVDGPFTEAKEMIAGYTLIEVKTREEAIEWAMRMPDPHGYGQGEIELRQVFEVED LMSNPETAEKEKSLRRQVEEQKKA >gi|333603670|gb|AFDH01000125.1| GENE 76 74443 - 74508 61 21 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTYISEWQELDLLPPKTSNQS >gi|333603670|gb|AFDH01000125.1| GENE 77 74560 - 75372 585 270 aa, chain - ## HITS:1 COG:mlr2176 KEGG:ns NR:ns ## COG: mlr2176 COG0596 # Protein_GI_number: 13472017 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Mesorhizobium loti # 4 269 1 261 262 215 46.0 7e-56 MDSVISKDGTKIVYDKTGQGPALILVTGAFSYRKFPGQVQLAELLSGQFTVYNYDRRGRG DSGDKQPYAIEREIEDLQAVIDEAGGSAFVWGLSSGAVLALQAAASGAGIAKLALHEPPF VVDPADRKPPHNFTAHVSELIAAGRRAEAIKYFMAQGMGAPSFVVGMMKLMPSVWSNLMA VAHTLPYDAALLDGYMEGTPLPAELWRSVTLPVLVLEGTESPAGLRHGAQALAHALPNAR LLSKKGLGHTKKLPAKLISTELSAFFTGKQ >gi|333603670|gb|AFDH01000125.1| GENE 78 75716 - 76984 1252 422 aa, chain - ## HITS:1 COG:lin1824 KEGG:ns NR:ns ## COG: lin1824 COG0477 # Protein_GI_number: 16800891 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 1 418 1 417 419 225 32.0 1e-58 MNWLKWDLNLKIRLTGDTVFNLLFWMYFPFITLFFSEAFGKSVASVLMAVPPIFSLAGGL FGGFLSDRLGRRPAMLLGAFMQASMFAVFALSSSHWLDYFAYIGIGLGGAIYNPASSAMV ADVTPPKDRRMVYATFVTGRNIGAVFGPALGSVFFFQYRQELLWTCTAVTLLYSLAILLM IKETLPAAAGAARQSMRLSGIWKEQVSSYGVIFRDKLFALYIAAGVLVTIAFMQLDMYLA VYVTEYVPAQKLLTLRDWSLALNSSQAFGLILGLNGLLFVLCVMPVTKWFETWPERNVLI LSSLLFGAGMFMFGFTTQIGLLLIFTVIFTIGELSRSPVTESFISKYAPDHARGRYMGAS GLQFSIGRLIAPVTVLFSAWFPPLVVFGFIFLVTILSSLLYIRLFKMLPASYYDHQREAD AV >gi|333603670|gb|AFDH01000125.1| GENE 79 77143 - 79164 207 673 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 429 650 2 226 245 84 26 2e-15 MNVGKKLFKYVLYYKKSFIGALCLLLLMVAAELSGPLIAKQLIDQHILGIEKPWYETREP GENAVPYKGKYYKRGDYFHEQEEKGQEVRILQVQRQFVFVPEAVKVDGERLVQGEQLIIK RNAETGAYPADILSTRDLFLFYEPELGKIVHLILLYFGFVGAASLLEYGQTYALQVSSNR VIQKMRVDVLKQIHRIPIPYFDRIPAGRIVSCVTNDTEAVKELFVTVLRNFFTGAVYITG ILTALFILDVRLALICTLIIPALAGWIYLYQKFASKYSQTIRSTLSDINGLINETIQCMP VIRAFSRQRTVRQEFEDKNVRYFTYSNKLLTLKALTSNNLVTVLRSLALAAIIWYFGGAG LSHQSVFTFGMIYAFVEYVERLFQPLVGMVNQLAQLNHSLVSAERVFRLMEEEGSDVVDE ETPRMKGDVKFENVSFAYSDDHYVLRDISFEAKQGQTIAFVGHTGSGKSSIMNVLLRFYE LQKGTVTIDGHNIQTLSRQQVRKQIGIVLQEPFLFTGNIASNISLDNPAISRELIEDSLR AVGAQRVLQHLPNGLDEPVIEKGSTLSVGQKQLISFARALAYNTPVLILDEATSNIDTET EGMIQSALEVLKKGRTTFVIAHRLSTIHHADLILVMDRGQIAERGNHDELMRQRGIYYQM YQLQMRDRANVPV >gi|333603670|gb|AFDH01000125.1| GENE 80 79179 - 80936 238 585 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 299 565 88 353 398 96 29 6e-19 MIVIVSVLVRLGWFFKEHKIRYTLAVLILVLVNGVEMLPPLLLGSALDHIQQNTLTPASL AQYIGFILGLSVVIYTLNYAWMFQLHGGANRLQLKMRSRLMSHLLKMTPPFFEKYRTGDL MARATNDIKSIGETSGSGILTLVDSCLFSVTILITMGLFIDWNLMLVTILPLPLIAAVIT FFGKYLHRRFTIAQDAFGALNDQVLETITGIRVVRAYVREEANQKNFETMAEDLFRKNVA IARVEALFEPTIRMLIGISYLIGLGYGTYLVFQQRISLGELITFNVYLGMLIWPMYAIGE LINIMQRGSASLDRLDEIMNYPPDVRDGEDLEEDIALPHTLQFHRVSFRYPSSQSDNLKD ITLHINRGQTIGIVGRTGSGKTTLLRQLLREYPADRGEITVSGISLERIRLEAWNQWIGY VPQEQLLFSKTVKENVRFGKENSTDQEVFRALELASFMQDIHTLPDGVDTLVGERGVSLS GGQKQRIAFARAIISEPEMLLLDDALSAVDAKTEASIIANLIAERKGRTTLISTHRLSAV EHSDFIVVMDQGRIVQCGTHLQLIACHGWYKEQYESQKLQMNLLK >gi|333603670|gb|AFDH01000125.1| GENE 81 80982 - 82496 1372 504 aa, chain - ## HITS:1 COG:AGl1138 KEGG:ns NR:ns ## COG: AGl1138 COG2303 # Protein_GI_number: 15890686 # Func_class: E Amino acid transport and metabolism # Function: Choline dehydrogenase and related flavoproteins # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 6 502 14 505 527 160 27.0 5e-39 MTKQFDVCVIGSGAGGSVVSKYLAEKGLEVVIVEQGELIEPGTNIDSVMSHAEKAYARES DGTWGDNGYPWSASAVGGGTIFYAGISFRYKDVDFDAREYVAPDALDPQWPIRYSDLDPY YNKIEQWLGVSGDLNADPFKNRAGTGSLRTAHSYSQQGALIDQAGKELGLHPFPTPLAVN TTDHNGYPGCDNLTSCTDYACPIGAKADSFTRILKPVLKLEHVTLMKNTKALAFHQTDPS VIDSLECLDLGTKERFRIRAKQFVLAGNAIQSAALVLRSTNKWWPDGVGNKSGLVGSGLS FKNSEYVSGWVDNHPYEQLNEPLKGLYSTVSITDYYQDPHCHSGLGGLIYEANPWTYYGH EGSGMYVQLECIIADQPMVTNKVRLSNDKEATGVPKIVLDYQTHEWDKRRLSFMIERAGE ILTAMGAKQVQCNPSYYYLGSAHLHGTCRAGTDELTSVVDKFGRFHTIDNLFAADGSFMP FAGGVNPTLTIQANALRIAENMSV >gi|333603670|gb|AFDH01000125.1| GENE 82 82535 - 82783 318 82 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|70720854|dbj|BAE07078.1| ## NR: gi|70720854|dbj|BAE07078.1| BtrV [Bacillus circulans] # 1 82 1 82 82 150 95.0 2e-35 MDNKERNGLYQVIYAISGVTGEDGDELVETFKQGPMEVDKRDFFEIIQRVESLFDCTLDM NLEGPYLIHADEIATKITKLNV >gi|333603670|gb|AFDH01000125.1| GENE 83 82800 - 83441 551 213 aa, chain - ## HITS:1 COG:no KEGG:CDR20291_1709 NR:ns ## KEGG: CDR20291_1709 # Name: not_defined # Def: putative phosphoglycerate mutase # Organism: C.difficile_R20291 # Pathway: Glycolysis / Gluconeogenesis [PATH:cdl00010]; Methane metabolism [PATH:cdl00680]; Metabolic pathways [PATH:cdl01100]; Biosynthesis of secondary metabolites [PATH:cdl01110]; Microbial metabolism in diverse environments [PATH:cdl01120] # 5 210 7 202 213 69 29.0 9e-11 MRLILIRHAQAHCNILEDDALMDAYDPHCELTEAGIGQAVKLRDEYPVSLTPSVIYSSPL KRARETAAIFQGRFPAVPFIEDERLSELKAPESFIPPITQGQWDLYLEQRIRSPHLEIVK GLESLDVQRERIERFYKDLFRKYAEEACNIVIFTHAFSIQLSILFFLGLGNEQLLQWQIK ASNTAMHIIHYDPTSSSFLLESLNNRSHLQTTG >gi|333603670|gb|AFDH01000125.1| GENE 84 83480 - 84496 773 338 aa, chain - ## HITS:1 COG:BS_ygcA KEGG:ns NR:ns ## COG: BS_ygcA COG2141 # Protein_GI_number: 16077951 # Func_class: C Energy production and conversion # Function: Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases # Organism: Bacillus subtilis # 28 330 34 344 378 119 29.0 1e-26 MDTIQYYCQIPGVNHYAAKKEFMENSVKIAQLSDAYGIVGSLSFFNHSVLDPWAVSSVIM QHTERHVPLIALQPYMYPPYTAAKLIQSFTYLYNRRIDLNMITGAVTGELQQTGGYIDHS SRYKKLYEYVQVLRLLLESDSPVSFKGDYYELNNLEFKPSLPDKQLFPRIFMSGSSEEGL ETGLQAADFVVTHPGPLEHFKHHFSEKVQGSPVQSAIRIEIIARETAEEAWKAAHARYPG NRQGTIQLRMKKNSESSWQRTLAELALASETYDEVFWMGGYMNGGIYSPVLVGDYEQVAA YLNEYYKLGVKAVLLGSMYSEEDFIHFSRVKEGISNPV >gi|333603670|gb|AFDH01000125.1| GENE 85 84533 - 85819 819 428 aa, chain - ## HITS:1 COG:AGc3079 KEGG:ns NR:ns ## COG: AGc3079 COG0019 # Protein_GI_number: 15888979 # Func_class: E Amino acid transport and metabolism # Function: Diaminopimelate decarboxylase # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 17 405 57 440 440 270 38.0 4e-72 MNLDQAEITALTKRFETPFYLYDGDFIETHYRQLRSRTNPAIQFYLSLKANNNIHLAKLF RQWGLGVEVASAGELALARHAGFSAENIIFSGPGKKRSELEIAVKSGIYCIIAESVEELF YIEELAEKENKTARVAIRINPDKSFGSTAIKMGGVPRQFGTDESMLDAVIDVIRSLQFTK FIGIHVYTGTQNLNTDSIIESMKYTVDLGRSLYERYGIVCEFINLGGGFGVPYFSHEKAL DIGRITQTISDYVQEARDSLFPQTTFIIESGRYLLAQAAVYVTEVLYRKSSKGETFVIVD GGMHHHAASTFRGRSMRSNYPMECIPVRENSGRRELEKVTITGPLCTPEDCVGKDVHVPA LYPGDLVCVLNSGAYGLSFSPVHFLGHPTPIEILKRNGSYELIRRKGTADDIVATQLQTE SNLLFVDK >gi|333603670|gb|AFDH01000125.1| GENE 86 85847 - 87106 738 419 aa, chain - ## HITS:1 COG:no KEGG:Ccel_2510 NR:ns ## KEGG: Ccel_2510 # Name: not_defined # Def: hypothetical protein # Organism: C.cellulolyticum # Pathway: not_defined # 13 361 16 385 450 144 29.0 8e-33 MKFTHPLDYYRLNGKQILWYMNIGEDQDSQASNYFPSVKDPQSEKIVVQQEQQLLFLARP QDTVFFHTMPEQAFLDYWKERRLSLPSIICCDELSQVPDLARYTVIPFIVSDHLLELKRR YPHMDILAPDLAVCREINHKFNTRRLMEKNGFNVTTGYFCSDIESLEHAYDQLISAGFSK CVLKVPYGSSGKGLKVIDNERNFRFLLNYIRNRQTNVDLLLEGWHPHRLSLTSQLFISEY EVHLLAVTEQIVDPNGVYKGTNFTPALSQTEAAEYREEILRAGELIRQMGYTGVLGIDSI IDTNGELIPVIEINARLTQVTYILPLVIEQKKRYEFVESRVLVFNSRADLNYEDYVNDLS EVTRDLPVEIDLYNFCKASGAFKNTYKLFVLVSAHNSEQLKKARSLLDELNTKMTTAVH >gi|333603670|gb|AFDH01000125.1| GENE 87 87103 - 87366 306 87 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|70720849|dbj|BAE07073.1| ## NR: gi|70720849|dbj|BAE07073.1| possible carrier protein [Bacillus circulans] putative acyl carrier protein [Bacillus circulans] # 1 87 1 87 87 122 94.0 1e-26 MSLETQENVRTAQIVSCVNEILQTKESITPETDLFLLGLDSVTAVNLIVSLESQFGITFN DDELIVENFSTVRKITEHVTDKLEGTL >gi|333603670|gb|AFDH01000125.1| GENE 88 87435 - 88343 593 302 aa, chain - ## HITS:1 COG:no KEGG:Dd1591_3651 NR:ns ## KEGG: Dd1591_3651 # Name: not_defined # Def: hypothetical protein # Organism: D.zeae # Pathway: not_defined # 6 299 13 310 312 79 25.0 2e-13 MCLTRYDEKFFDCRKSQIIAYLDSKRVPVIPLFYNSYQSTAEIYRQIFIENKSKWKYSEP SFSDDDLLRKGIMPVRTSFPDFSQALDCLKDLLARHKLVFVWGDEYYLPYRKEAFHAIHS THSLVVTGYDGENKAYYVEDWDGLYGYLPAAHLEAAFDSLSGQMRTLLVLELNDEEMREN KEEDLALFRQWLQAFEDDYIFYDRVLLDMRDYEENRLISMDHGLRLIAASRHVFSKFLHY IEDAPEEVGLLIRNHQLANHIATIVRRYMIAKQIDWDGAACKIQQLREQEDDFMRKLKSR YG >gi|333603670|gb|AFDH01000125.1| GENE 89 88324 - 88743 320 139 aa, chain - ## HITS:1 COG:all3282 KEGG:ns NR:ns ## COG: all3282 COG2105 # Protein_GI_number: 17230774 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Nostoc sp. PCC 7120 # 3 105 13 118 155 64 35.0 7e-11 MPKLFVYGTLREGENNHKYMKEATLLSRKASITGSLVDTGNGYPGLLLDNQLVAGEWYEV SEETLKRIDELEEYFGPGDTRNLFDRIECQVNESGGTHLGWTYVYNRDDYLETRFSDWKQ YRLQHASGIEEKQDVPHSL >gi|333603670|gb|AFDH01000125.1| GENE 90 88811 - 89509 495 232 aa, chain - ## HITS:1 COG:all0352 KEGG:ns NR:ns ## COG: all0352 COG1028 # Protein_GI_number: 17227848 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Nostoc sp. PCC 7120 # 2 203 7 215 248 100 33.0 2e-21 MIVLITGANRGLGLSLCEVFLERGHHVLAGVRNMNRAEQLLPLKTKYKEELSIIPVDVSS QDSIRQAYSLITAVTPKLDAIINNAAREGIRCKMIQEVDIADFEETWKTNVLGPMAIIKY LKPMMESSAVKSILNISSEAGSISELPLKTYGYCISKAALNMFTRMLERELKPENFKVLA VHPGWMKTEMGGEDAPYEPGEIARHLYERLTESLGNEVDFNIVDHLGNRMPL >gi|333603670|gb|AFDH01000125.1| GENE 91 89521 - 90570 927 349 aa, chain - ## HITS:1 COG:lin2969 KEGG:ns NR:ns ## COG: lin2969 COG1063 # Protein_GI_number: 16802027 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Threonine dehydrogenase and related Zn-dependent dehydrogenases # Organism: Listeria innocua # 1 347 1 349 350 145 30.0 1e-34 MEILTYTGPSRLIVETAEELPLKSGECRIQSLYSGISHGTEMGAYRGIAPYFTRDMDSET RLFEDLAEEHKVKYPIRSCEDDAWFIGYSNVGKIIEVGADVEGFSVGDIVFSHGRHQTIV CKHHKKIFKLPQKLEPELGIFYTNLMTAYNAVLDTRIKIGDVVVVSGLGVVGQLIAQLAK LSGATVVGVDPLENRLNIAREVEIDHVFNPNRTDVAKEIREITNNRGADAVFEVSGHSTA LNQAIRIAAPDTVITAVGWYQGGQSVLNLSEEFHQNRITIRASQTLGIDPSISHMYNDAR RRNIGKDLLLKLKLRNLISHRIPFGDAPKAYEMIDKHPHEVLQVVLTYS >gi|333603670|gb|AFDH01000125.1| GENE 92 90594 - 91421 484 275 aa, chain - ## HITS:1 COG:no KEGG:ANT_00330 NR:ns ## KEGG: ANT_00330 # Name: not_defined # Def: hypothetical protein # Organism: A.thermophila # Pathway: not_defined # 8 263 7 245 246 80 30.0 6e-14 MNQDKRAFMFISPHFDDVILSCASTLMELVNQGHTCKVLTVFGGCPSVRFQPGEIARQYA AEDLGLFEDEIEGDHLSILVARRLQEDQQAFRHLAGVQVEVLSFPDAIYRENKGQPYYRT EEDLFGLPDKQDEDIFLPKIEKYLQSCDLARKFTWVFPAISKHVDHQLLTKAGLRLMSQG YPVLFYSEFPYWQQYNEFLQDGWRQLELRNSVYTPVKRAAVLEYKTQLLGLFGEEAETKI NNGDILSEAELFWIQGTDTQVWRVFRAISSEPLQT >gi|333603670|gb|AFDH01000125.1| GENE 93 91424 - 92530 795 368 aa, chain - ## HITS:1 COG:HI0208 KEGG:ns NR:ns ## COG: HI0208 COG0337 # Protein_GI_number: 16272171 # Func_class: E Amino acid transport and metabolism # Function: 3-dehydroquinate synthetase # Organism: Haemophilus influenzae # 1 365 1 356 362 157 32.0 3e-38 MTTTQICFADRCFNFSFGEQVLESIESYIPRDEFDQYIVISDSGVPDSIVHHAAEYFGKL APVHILRFQGGEEYKTLSTVTNLQEQAIALGANRRTAIVAVGGGLTGNVAGVAAGMMFRG IALIHVPTTFLAASDSVLSIKQAVNLTSGKNLVGFYYPPRFVFADTRILSESPPRQVKAG MCELVKNMLILENDNKEFTEDDLNSTNVYSPKQLETFINFCISAKMSVLSEDIYEKKKGL IFEYGHTIGHAIELAEQGGITHGEAIAVGMIYAAKIANRMNLMSEHDVSAHYWLLNKIGA LQDIPLKSDPDSIFHYLIHDNKRGYIKLDEDNLGMILLSGVGKPAVYNQSLLTPVRKTLI KEVIREGL >gi|333603670|gb|AFDH01000125.1| GENE 94 92532 - 93830 1096 432 aa, chain - ## HITS:1 COG:BMEII0192 KEGG:ns NR:ns ## COG: BMEII0192 COG0001 # Protein_GI_number: 17988536 # Func_class: H Coenzyme transport and metabolism # Function: Glutamate-1-semialdehyde aminotransferase # Organism: Brucella melitensis # 34 387 44 411 411 102 26.0 2e-21 MKQDLVENSEKLLAVLGTHIDSPVDPFRNERVMFSRGSGAYLFDYNGGNYIDLMNGKGSI ILGHNDPHLNAALRNFLEQDREIVTGPSKPIVELAERIKKDSALPDAKVSFYATGTAACR AAVYAARDYSGKKIVLSSGYHGWDPMWRQQGALLEPNEDGVIEFYFIPELLERALTAHKD QVALVLFSPDYTYLSASTIERILGICRAHGVLVCCDDVKQGYRHRQGSSLEMVTAEKADM YVFSKGLSNGHRISCLVSTDEIMAETKEHTYTAYYQMLPILSSLETLKKMETGKGYDLIR FYGHALTGNLKELFAQSALPIEVNGSSIFQLVFGDEELEEAFYREAFNQGLILFEGDNQS LSLCMDKDVQVDLLRRFANVTDVLSEQFKHLRGKEVTTEQTFRTAWNMIDGASDLLPYEK QLKLLDNLIGGG >gi|333603670|gb|AFDH01000125.1| GENE 95 93872 - 97546 2309 1224 aa, chain - ## HITS:1 COG:no KEGG:plu4149 NR:ns ## KEGG: plu4149 # Name: not_defined # Def: hypothetical protein # Organism: P.luminescens # Pathway: not_defined # 7 518 4 508 1227 219 32.0 8e-55 MNSFGIKCERLLELRNNKTFTAHIPPLYPIDPTAAVEFLEQYSGTEEELPGRLAQYMEQR EPSRFDQIKKVCGDLPWIVRSSGEEDLNETTNAGAYLSLVCERRDSFYEVLAQVMLSGST EHARNQNRRFVNRHLHDHEPIPVFVQPLVQSEHTGHPVPYDATPYVKGEDLQTIIGLLKN LHSTMPDYALDCEWVGDSDFGTISMTSLTELVDGNLTGQIAFGFDLFSTQHVKANNSVRY LLSGDELNLWQGHIFQEVNMQSLFLVQTRPAKNYRLFQHVYELSASSKKELEKDAALCLD AKEFISQGGKPFFGKFIKAVTLNEAWNAYLQYTSKDVKEDIAAILVEFGTRTEHAGIMFN QVGIPVIRIEITLIPESMNYIVLDPFSLQCRLYSHNKEVKALQYETREIIPLPDNCILVQ DREEKQQREAMAVSADEHFNEALNKPFFSEKTKQHLTANSAYPDYSFIFHGEEGVRSPSY YANEAERLTAETVDAFLKSREWPEASANYFLALFHAKNLLKDRNIAAYFERKPEDRGRSN ETLVYWKVLRIHHLLAKCSSRDRETLLERVRSEMNVNSAVIELRLDVLFLFEQYLDALCI YSKREEEALIQNFIGILSSVKDEDLPIVLDLARNGIFNAGHLCQFLKQAIENRHLFDLYR NYSLVSKEFAILPYDLSVIGRFPYFNEVFVDLNNEMNKYESLGELSSSIFHTVVETYDKS AKEILLSVIDDGSPSYYQAYLRLLTEWLGLIRQFDKNEQVIQTFLDWIGVQEDRQAEIED YFLEEIHWKTRIQEAEAVIAEDLSLTNLHQLHNVLHQWSLYLVPASNGAHMPLFVKEMVA FAQSFSEQENRLLRMQKDFFEIELAMCTHKAGFMFYKHSVSVEFSEPPSVHDDEIARLSA FASFMNKCNDWFEAYRFRTHYEKVAGTWTCYMTVKSSEDGALQQSDYKTIFHIIRFVLDS SYDFSHNPLSAVEDLTAQFNDPEWKDIFRKLVNYRVHFDDEGQFINLKLFAMSTFFTYLC LSPSLRSRLLSLYREGFDRMVGELAVLEDGMARAGHYSEWLEHYESATYTALFLAAIYPL ETVGKLEALHDRRLTYDIVSRNLLKHKDAANKVIETLPSWDKALQSSVTDKLLHYCPAKF FKTVSSVNEVAKELSKRSKSFKRAKQVLLNAYADSLEPDILQQFTDDLQYVPYAGTEAQN QRLDKCLTDSGKKRYDIQKEILYI >gi|333603670|gb|AFDH01000125.1| GENE 96 97593 - 99407 704 604 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|70720840|dbj|BAE07064.1| ## NR: gi|70720840|dbj|BAE07064.1| BtrL [Bacillus circulans] putative biosynthetic protein [Bacillus circulans] # 1 604 1 604 604 1149 91.0 0 MKDNPISLFHELESYVRGSKDRLHRYMYACILEQRLADLLLLSRCGVHPEDRDRLAVRLA SQRSLCVQAASDIAEGTQEAGGSTPAWPDYKAAKSSVTQKRPELLSLIKVMQELRTPECS GYDLCDLEVCREDALHWLRVHADPSSPPVLIGVRTGGAFYAPLWASVLKQRWGNEALYHT VRALRKPSDPGASLYLPEELSMLPEAIKSDTDIVILEDQPHTGGTVLELAGRLSVKYRLN KPVWVSSPGRLFKIENGRLAKCSDRIPLNTATRKRIWQMLGNSEEVVEFLLPKLGLSDAR PADLEAVPYKSVPHWNDPMYRREVPFRINPKKTPLFIRRKSTNEPVVFAKFIGKDLFGDF QFHQLKKFEKYSSDILAYQDGYVMTKYEPGLREMRDMFVNMPSAVTGEICQIISGYWKTL LDSCQVSGGHPVHPLADHWQAHLGEMEDFIGRKLPYDLDWFEQSLHTEWTSSAHVYTSLP YANRYGHWKARLSAGKRLKTYRFHIDSTWGGTSSIEVELASFLLENRVRPDDFRLLVNQV KKEAESLTIGAVTDALPIACILQVANLLKQAKGESRLPKGLILSEAMQSFEYLQAMKPKL SDVR >gi|333603670|gb|AFDH01000125.1| GENE 97 99397 - 100635 794 412 aa, chain - ## HITS:1 COG:MA0798 KEGG:ns NR:ns ## COG: MA0798 COG0438 # Protein_GI_number: 20089682 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Methanosarcina acetivorans str.C2A # 21 353 14 318 376 101 27.0 3e-21 MNILRLTPHYYFETTEWPSRFDPMGGMQVQITNLTEWLADQGVMQDVLTTGIPGIPRTLQ LRERLTVHSVRFMTLPFKSSQTGTVFLDQSWFMGAVKWIVLNGKKKNYDAIHVHASGVVW PLLAGMFAQKYLKKPLILTIHCSRIFTYKPMNKWDQFVHDFVKSVELKSIKLSHKAVVLT DKRLDSYNRLLEDSSKMTAISDCIGSNHLSHSIDCPFCSRLKTELLGKKTVLFLGRIAHE KGWATFVSVAKELADKIGDLQFIVCGDGPQREAMEEQIKAANLQNQFRITGFISHKFVSC YLHHAQLFLLPSHHEEFGGSLIEAAIAGVPIISTNNGGPADIFTHGETAILTDPSDVLGI ADEAYKILTNDSVAESLRLHSRPEVVSKFLPHCVYPNYLNLYASKEAAVHEG >gi|333603670|gb|AFDH01000125.1| GENE 98 100654 - 101406 503 250 aa, chain - ## HITS:1 COG:no KEGG:Despr_0915 NR:ns ## KEGG: Despr_0915 # Name: not_defined # Def: radical SAM domain-containing protein # Organism: D.propionicus # Pathway: not_defined # 4 235 36 271 287 143 34.0 6e-33 MDKLFSMIEVEVNSQCNRTCWYCPNSVSQRKENGEMDPALYKTLMEQLSSLDFAGRISFH FYGEPLLCKNLDLFVGMTSEYIPRARPIIYTNGDFLTEKRLQTLTELGIQKFIVTQHAGA KHKFRGVYDQLAGADKEKVVYLDHSDLILSNRGGILDNIPQASKANMSCMVPSNLAVVTV LGNVLPCFEDFNQKMVMGNISEHHISDIWNNDKFTSFRKMLKEGHRGKSDLCKNCNNVSV QTEDQYDYVL >gi|333603670|gb|AFDH01000125.1| GENE 99 101436 - 102692 532 418 aa, chain - ## HITS:1 COG:PAB0774 KEGG:ns NR:ns ## COG: PAB0774 COG0399 # Protein_GI_number: 14521367 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis # Organism: Pyrococcus abyssi # 47 351 35 319 366 199 37.0 1e-50 MTIPFDQWPEWPQHSDRTRQNIEEVFQSNRWAISGYWTGEESMERKFAKAFADFNGVPYC VPTTSGSTALMLALEALGIGEGDEVIVPSLTWIATATAVLNVNALPVFVDVEADTYCIDP QLIKSAITDKTKAIIPVHLFGSMANMDEINEIAQEHNLFVIEDCAQSHGSVWNNQRAGTI GDIGAFSCQQGKVLTAGEGGIIVTKNPRFFELIQQLRADSRVYCDDSSELMHGDMQLVKK GDIQGSNYCLSEFQSAILLDQLQELDDKNAIREKNAMFLNDALSKIDGIKVMKRPPQVSR QTYYGYVFRFDPVKFGGLNADEFCEILREKLHMGTFYLHPPYLPVHKNPLFCPWTKNRYL KSVRKTEAYWRGLHYPVSERASEQSIVIHHAILLAEPSHLSLLVDAVAELARKFCVTH >gi|333603670|gb|AFDH01000125.1| GENE 100 103114 - 103182 59 22 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRAIGSIRFLSEMNLSNGISRI >gi|333603670|gb|AFDH01000125.1| GENE 101 103404 - 104465 966 353 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_4996 NR:ns ## KEGG: GYMC10_4996 # Name: not_defined # Def: putative aminotransferase # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 353 1 353 353 537 72.0 1e-151 MSTEPNTAGWDAIDKEFVKLYGDQEPKHYGTLISYALGGPDPLDGISAYKTDEPAPHWHF VTFGFSELYDKESDHPEESGYGFELTFRLDRGAEEEEPPAWAINLLQNMGRYVFNSGNIF RSGDYMDANGPICLGSDTRLTALAFIQDPELPAIDTPNGRVEFIQMVGITRDELEAMQTW NTLGMLSACLPYMPHYITNLSRDSLLKVEAVSEAAEKGMREDGSNTGFLFVDQLAWEPGK KGWLNKTPAALTLGAKQAGIIGKLLQGRILKGKDLTLVGPEVRVIFKAGEKPECVAGDGE VRIILDEKAAGELSRGLMPKESVLEIPSLQGTVIRIVKTNIKDSEGNVVEVIG >gi|333603670|gb|AFDH01000125.1| GENE 102 104589 - 105206 498 205 aa, chain - ## HITS:1 COG:BS_ydeQ KEGG:ns NR:ns ## COG: BS_ydeQ COG2249 # Protein_GI_number: 16077597 # Func_class: R General function prediction only # Function: Putative NADPH-quinone reductase (modulator of drug activity B) # Organism: Bacillus subtilis # 9 198 4 192 197 200 50.0 2e-51 MVKESDVCLKTLVVVAHPNLQQSRVNKRWVEELRKHSGEVTVHDLYGAYPEKVLDIGREQ ALLAECERLVLQFPLQWYSTPPLLKQWLDEVFTTAWLFGPGGKAVAGKELLLAVSIGGAE ETYEAGGLIGYTISELTRPLQAFANQIGMTMLPHFKFHGANQAADEQIESSAERYVRHIL TPELDPRIARQRMLNEMKQKMQATL >gi|333603670|gb|AFDH01000125.1| GENE 103 105253 - 105906 608 217 aa, chain - ## HITS:1 COG:BH0987 KEGG:ns NR:ns ## COG: BH0987 COG1309 # Protein_GI_number: 15613550 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus halodurans # 4 175 3 173 203 60 25.0 3e-09 MSPRTKEQNEAIRNQRKQEVLQAAIQVYVEKGYAAAEMGDIADRAGLAHGLVYYYFKNKK ALFRELYETMMEESKHFTKTYFEQKGSVSDLFESYARVVCERVRVDPVIPRFYMRISLDV HHLYTPEEFSPFSWVKSFLQEMTQAIEKGIGEGTIRPGNSDLMARQFWGAVSQGMNYLDQ ARQEWMANGMPETEKKEQWEKALNQVAESSVSILRLR >gi|333603670|gb|AFDH01000125.1| GENE 104 105969 - 106163 85 64 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSTGVRLDKHTPDYRQALGYQVYGPLFRMCGGYFSESRLSDMNFSFASSDTGSLNVSPFG FAAA >gi|333603670|gb|AFDH01000125.1| GENE 105 106316 - 106861 472 181 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_2306 NR:ns ## KEGG: GYMC10_2306 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 181 39 218 218 213 55.0 4e-54 MPTTQALSDFLKEQPQNKIGAVAAFIESHVRENWQEILVKENDRLLKAYAEAGDPAYGTY LNLLFLPVHRQLSEAGLRPEPRLPGNFDISREWGRNPDQSDQERWMWSTLHPIEGPPVGT IVTITYHDHTRFRIPRRPGIIALTETSQQDIVEALSRLSSDFKQALEFSVEYENYLRSLE Q >gi|333603670|gb|AFDH01000125.1| GENE 106 107121 - 107705 584 194 aa, chain - ## HITS:1 COG:SMc04166 KEGG:ns NR:ns ## COG: SMc04166 COG4430 # Protein_GI_number: 15965748 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Sinorhizobium meliloti # 1 194 1 194 199 159 41.0 3e-39 MSKKAPELPVLCFENQEAFEIWLESNHEASPGVLLQIAKKNTRLVTVSYQEALESALCYG WIDSQKKTFDDQSWLQRFTPRGAGSIWSKVNKDKAEQLIADARMKPGGFKAIEDAKRSGQ WDKAYEPQSSGAAPEDFAARLELNAQAKAFYDTLNKQNKFAIHFRIQNVKKQETREKRIL QFIEMLERGEKIYP >gi|333603670|gb|AFDH01000125.1| GENE 107 107815 - 107973 105 52 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MAAGKGTPKPGQVRYDEIDPPIESDTAIITLEHQFVSQAARNFKKLLIDSLH >gi|333603670|gb|AFDH01000125.1| GENE 108 108076 - 108444 274 122 aa, chain - ## HITS:1 COG:CAC1444 KEGG:ns NR:ns ## COG: CAC1444 COG4767 # Protein_GI_number: 15894723 # Func_class: V Defense mechanisms # Function: Glycopeptide antibiotics resistance protein # Organism: Clostridium acetobutylicum # 2 81 100 179 326 63 40.0 1e-10 ALLFRCKFVPFMVCFLASITFLEMLQMLTRLGAFDINDIVINTLGAAVGFWAQRLVPGSR DSLQGMVRLVLMTIILSAGTVAAVGGMNDSLEKGRGSYLFKPLESPSHSVVLDHDVQPRR AE Prediction of potential genes in microbial genomes Time: Sun Jul 17 10:47:58 2011 Seq name: gi|333603668|gb|AFDH01000126.1| Paenibacillus sp. HGF7 contig00271, whole genome shotgun sequence Length of sequence - 533 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 532 268 ## COG1020 Non-ribosomal peptide synthetase modules and related proteins Predicted protein(s) >gi|333603668|gb|AFDH01000126.1| GENE 1 1 - 532 268 177 aa, chain - ## HITS:1 COG:BS_ppsC_2 KEGG:ns NR:ns ## COG: BS_ppsC_2 COG1020 # Protein_GI_number: 16078893 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Non-ribosomal peptide synthetase modules and related proteins # Organism: Bacillus subtilis # 19 177 1031 1195 1505 127 43.0 8e-30 TVEAISYAAQKSALAEQYEQAEVSGIVPLTPIVREFASWNLPKPHHFNQDMLMEIELEEE KQLREVLDALTAHHDMLRSVYREGQLEIVKVSDSKAYELKVYDYSEEQAATELMEAACTD LHSSIHLEEGPLVKAAMFRTAAGNLLFLGIHHLVVDGVSWRILQEDISTAVRQVKEG Prediction of potential genes in microbial genomes Time: Sun Jul 17 10:48:02 2011 Seq name: gi|333603647|gb|AFDH01000127.1| Paenibacillus sp. HGF7 contig00219, whole genome shotgun sequence Length of sequence - 19348 bp Number of predicted genes - 20, with homology - 8 Number of transcription units - 13, operones - 4 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 216 - 257 3.0 1 1 Tu 1 . - CDS 347 - 1024 117 ## COG0739 Membrane proteins related to metalloendopeptidases - Prom 1204 - 1263 2.9 2 2 Op 1 . - CDS 2085 - 2738 130 ## 3 2 Op 2 . - CDS 2752 - 4863 728 ## Dred_0966 hypothetical protein 4 2 Op 3 . - CDS 4875 - 5609 201 ## - Term 5621 - 5651 4.3 5 3 Op 1 . - CDS 5662 - 5985 268 ## 6 3 Op 2 . - CDS 6007 - 6207 144 ## 7 3 Op 3 . - CDS 6231 - 6701 294 ## Swol_0133 hypothetical protein 8 3 Op 4 . - CDS 6720 - 7679 295 ## - Prom 7769 - 7828 5.7 9 4 Tu 1 . - CDS 8580 - 9248 137 ## COG2200 FOG: EAL domain - Term 10360 - 10397 0.1 10 5 Tu 1 . - CDS 10533 - 10913 279 ## - Term 10935 - 10979 8.0 11 6 Op 1 . - CDS 10994 - 11188 172 ## 12 6 Op 2 . - CDS 11230 - 11439 299 ## - Prom 11512 - 11571 2.6 - Term 11860 - 11903 -0.6 13 7 Tu 1 . - CDS 11915 - 12130 72 ## - Prom 12329 - 12388 3.6 14 8 Op 1 . - CDS 12815 - 13663 328 ## Aaci_0581 hypothetical protein 15 8 Op 2 . - CDS 13660 - 14862 99 ## COG4962 Flp pilus assembly protein, ATPase CpaF - Prom 14980 - 15039 3.0 16 9 Tu 1 . - CDS 15143 - 15856 409 ## gi|218290612|ref|ZP_03494714.1| SAF domain protein - Prom 16099 - 16158 4.5 17 10 Tu 1 . - CDS 16703 - 16927 59 ## - Prom 17085 - 17144 2.0 18 11 Tu 1 . - CDS 17399 - 17926 -62 ## Aaci_0577 hypothetical protein + Prom 17966 - 18025 1.7 19 12 Tu 1 . + CDS 18170 - 18247 68 ## + Prom 18419 - 18478 4.5 20 13 Tu 1 . + CDS 18545 - 18805 109 ## + Term 18871 - 18920 5.1 Predicted protein(s) >gi|333603647|gb|AFDH01000127.1| GENE 1 347 - 1024 117 225 aa, chain - ## HITS:1 COG:AGc3364 KEGG:ns NR:ns ## COG: AGc3364 COG0739 # Protein_GI_number: 15889135 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane proteins related to metalloendopeptidases # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 41 213 260 423 432 100 35.0 3e-21 MNELKSLSVISQYKGYGVDADGDGLADPWSVKDAIFSAAKYLAANGAASGKLDQAVKAYN HSQEYVDKVLTFANSFIQGNSVPVSIDGTVWPLPQGEYITSKYRIRWGKMHTGIDLAAGG DSTGKTIVAFSKGVVTYSGVKGGYGNCIIIDHGGGMTTLYGHMLQPGIAAGTQVQPGTPI GLVGDTGNSNGAHLHFEVRLNDTPVDPLPYVIGFKPKILDNVSRD >gi|333603647|gb|AFDH01000127.1| GENE 2 2085 - 2738 130 217 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKIQRSLSVFGLLELNFLIVILSFSFVLIAQFFPVFYYLLAPLLGYNILTIFHVWRCKAA ARRQGLQHYYLVPVATPLARLVLRKKYALPKNAIIFAIHVQDRNKSVYASVDTRSLLTRI NRDLQAGLEGLKELNEKTNQPVILIGSTFVAIGSRTKRILREKADFTELDSALLAFSSKL ISFFNQDYFKRKAAVDREANLCWKTYIIHFHLPSLNN >gi|333603647|gb|AFDH01000127.1| GENE 3 2752 - 4863 728 703 aa, chain - ## HITS:1 COG:no KEGG:Dred_0966 NR:ns ## KEGG: Dred_0966 # Name: not_defined # Def: hypothetical protein # Organism: D.reducens # Pathway: not_defined # 24 636 21 635 691 89 22.0 6e-16 MKKIHILLPFVFVLFLNYATVISAQGTEIYSDSFTNVDKVDTAKTTAIVNTAEGWVEAWH PPQSAVIDSSEQNGNLDNVVVATESGIMWYSLDKATGSLKANQAKSANSIRNALAVSMVP ETDSYFIFDDAGNIKHLQFDGSGMVHNPLMSISGLKNLVTVTAVNESTVAAAESDGTIKA YTFDTATGTMVENPALKFSTGLTDIVGVHNIPGTYNFVVTTRSGKSYEYDFDPIQGYKIN ASRTIIHDSQTIVASGIAGQADIISLLDPNKANAYVFDGSANSMTKYGLLSADPLQKAIA VSLPNETTQLIASSEGSVNVYQLDGATNRMVSNPFLEIKGLTFVKSYAPQSSMESKAFMA PSAKTMFQLLPSETNDPGTSIQYSMSVDGGNSFTPVQPNDWFHLPEDSATPIMGPFVVKA TLISGAKDKTARLTDLKLNAYYDVTPPTAPGKPFASPNPSYQITTPIHWEPASDILAAPS DGASGIKNYQFRSSIDGGKTWSEWVNTNSNSPNYNFSVPPDSAAVYHLQVRAVDAAGNIG PESLVGEAYINTKPVQIVPNPAGHLVTVNKIIEPSEGQSFPTDQVRVRVKAGGEVLYSIK TSGQVQSVRVIYSDGNTQDLQPEHPTTDYTDTNTWSGYYYPSSDSMIPLSMPQGTNIDIV KFELVASDGSTIKKSTDLHSDLLTIEGSLAGTVNGQMKAKLSN >gi|333603647|gb|AFDH01000127.1| GENE 4 4875 - 5609 201 244 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTWNYILKISIVLVIALVGYNLFDYLQKKPIEQVTSSYLKDITSGNKEAALKNLTGEAFL LVSQQNSQADELKSVNYKNVEIKGPIGQLDADVETTRNKLSQRYYFFKKDGNWLISQVVA LPTDITRSLPDIRAFRSKLAPDQESVITHYIQQIADGHVSEAAKELVGQAQIKAAAAPDS LPKQEIKLEEITSLGKTTNDTVLVKTKQRIEGVVSQTQTNLFALVQVNNGWKIADVKLLS REKN >gi|333603647|gb|AFDH01000127.1| GENE 5 5662 - 5985 268 107 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKYEFRAAVTESGWVEELWFGEKYYKKEFVPIDEGYQPLNGGWDDLEDELPDSLLDALEE HDMYYILLELKEAREGLSDDWVYRKKNCLGSIYIRIPKKDKLFKFFS >gi|333603647|gb|AFDH01000127.1| GENE 6 6007 - 6207 144 66 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTIEFSKLHEDQLIEHDGWIISKQEAEELILSGSVKTELYTVEQICIEAILQDDIEGFNP LLRIEY >gi|333603647|gb|AFDH01000127.1| GENE 7 6231 - 6701 294 156 aa, chain - ## HITS:1 COG:no KEGG:Swol_0133 NR:ns ## KEGG: Swol_0133 # Name: not_defined # Def: hypothetical protein # Organism: S.wolfei # Pathway: not_defined # 28 151 616 740 741 119 48.0 3e-26 MLKNSLMALALLLCFLAAPSNSSAAAGTDQVAIFKIGNGKYNINGQTIQDVAPYIKNDRT YLPLRFVAYSLGIGDNSIYWDQDTQTVYLSRNDKVVAVKIGANLMVVGQQSVVIDAPAEI SMDRTMLPIRLIAEAFDCQVVWDNENQQAIILNSQS >gi|333603647|gb|AFDH01000127.1| GENE 8 6720 - 7679 295 319 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTGSDFYRRWDYKYLTPLPPKGVRANVNSASDKVNIMWNAQYMAQGYKVYRNGILLGTTT VTNFQDNGVEPGQTYNYSITTTNPGGESAGEHLNFYVPKPEVTRTLEAAEAAKAAAEAAK AAAQSVAGDISYIKNTQLVNIEGSLRDSSGNTIISITKNIQSALNSGGSIYSALRDGKGT TLEAARDAVEAAKKAEDAAKQGEKNIKDTITEGNKNLNDKIDNIQTLLPPTLTKVSGYNR ATATSSTTFNVSLDFSNASEFRYQVDGGAWSSWTSLASYNASGYFSINVSSAGAHTVNVQ LRNKADGATATGSMTFFKL >gi|333603647|gb|AFDH01000127.1| GENE 9 8580 - 9248 137 222 aa, chain - ## HITS:1 COG:VC1592 KEGG:ns NR:ns ## COG: VC1592 COG2200 # Protein_GI_number: 15641600 # Func_class: T Signal transduction mechanisms # Function: FOG: EAL domain # Organism: Vibrio cholerae # 8 213 24 241 284 85 29.0 6e-17 MNVIETKFQPIIDVLNNTTLGYESTIKGRNGDTAQNLFSQAADHNFVLDLDRHAIELSFR DGQSLLQDNEYLFVNLHPKTLEKGLEQLSKFPTENVIWEITEQTSITSTIRRQIEILCSM GFQFALDDYGTRNSNLDMLLHDWLDPKFIKLDKEFTASLEFPRTSSIITSLVSLCEDTGI GLIVEGVESEKQLLQLRELGVRYMQGFHLGYPRPAKEVRLRN >gi|333603647|gb|AFDH01000127.1| GENE 10 10533 - 10913 279 126 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVVGATVTKDILINSHAIHAARASAIYTNTYNPNTNKYIADELAEEIGKIFPVSSTTITY DGPPVIPSSVGIKELRININRSDGSYITLSYAYGMPMPASGLLDRIGYVQTTPIPLNNSF SYQREW >gi|333603647|gb|AFDH01000127.1| GENE 11 10994 - 11188 172 64 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLKAIKMLNQKQTDKLHWDAVMQLAIVGLVLFVLVKNEPNVANMATSSITALQGTLTSFL TATF >gi|333603647|gb|AFDH01000127.1| GENE 12 11230 - 11439 299 69 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKKGITYLMILIGLIITGFFVYVMLQTGFSVVSLIGAIVGLVLILLQVKKLKDSSEEDED EDEEDEDDF >gi|333603647|gb|AFDH01000127.1| GENE 13 11915 - 12130 72 71 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTILREQLDRQISEEAHRIDEFIEERSENVKPKLLSLATLTFLFSVSLAGYFVFAYLKQN WNSGGGFFFGL >gi|333603647|gb|AFDH01000127.1| GENE 14 12815 - 13663 328 282 aa, chain - ## HITS:1 COG:no KEGG:Aaci_0581 NR:ns ## KEGG: Aaci_0581 # Name: not_defined # Def: hypothetical protein # Organism: A.acidocaldarius # Pathway: not_defined # 64 280 60 275 278 127 30.0 6e-28 MIILLTMLLCVISFSFWHWLKTLPERRAAAATGSGLNEEDITESFKKIPIPGGSKTWKKI IPGIVAAIIGLLFCIFVIHKPAAFGIVFGGLLPYLATQLLQGFKARTYRKDVKSALEFAA AVFGAKGSVEEWIHEAIPRLEGPLKLDFQQGSIQNRRDNTPITVFLENLMKKSPDQFFRW ALAGILSNYKSSGNQEEFINEVMNELVSQERFERKMNHERQNSMKLMVAILMFPVMLFML FQDTVEGILKVNITANFVLLLGLIGFVGLFLLAMRLTKTEMQ >gi|333603647|gb|AFDH01000127.1| GENE 15 13660 - 14862 99 400 aa, chain - ## HITS:1 COG:mlr6483 KEGG:ns NR:ns ## COG: mlr6483 COG4962 # Protein_GI_number: 13475420 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Flp pilus assembly protein, ATPase CpaF # Organism: Mesorhizobium loti # 1 383 108 448 461 123 28.0 6e-28 MGPAQPLWEKKNVSDIQIFVPQDNSEKQIITYMEGKRKTYTGKGFRDFEHARNWVNHHLS RIGLRFDLAAVQMDGTFPNGERIHIIFGPCGYSTDKNGEYKFVRCMIITIRRFVASFTLE SLTEKSEMTYELPSISVANPYNELSFKRRSVYAQRSNQGGGMADRATVAFLEIMIALGKN HIVCGGTGTGKTTLANALTGKIPSSEVLLILEESPEMQPQRESGCIRVYERKESNFRLED ALKGALRMFPDRIFVAELRDQIAYVFLQAVQSGHDGSSTTVHASSCLSGVDRIIDMAAGH NSAPDRELLRNIIFDRVDTILHASREGGERFFDEIIQLRPDGTTHTVMRFVQVGVNDSQD PVGYFEFNGPTDEFVEEMIRMGYGIPESWGWEVEARGYVE >gi|333603647|gb|AFDH01000127.1| GENE 16 15143 - 15856 409 237 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|218290612|ref|ZP_03494714.1| ## NR: gi|218290612|ref|ZP_03494714.1| SAF domain protein [Alicyclobacillus acidocaldarius LAA1] SAF domain protein [Alicyclobacillus acidocaldarius LAA1] # 10 234 19 240 267 63 23.0 8e-09 MLKSKTFIGWLLAIAIVGFVLGLFILNTTQKISNLVPTYVAIKDIPVDTVIEEKDFEKVL WPKSYIPEDAIKDPKEAAGKFTYTTILKGQVIKNAAVSDAKTMREVVRKFGLDYVGMAIP IENTDLPIEHVKAGDTVDIIGTFNETKKEGGQEIITKYVAENVPVTAVVPTGNKVMIAVG KAQAKDVARNLAAGKIKVLLNPNSYGDTQHLYQSNQGGGSILDPVPPATEKANGNDK >gi|333603647|gb|AFDH01000127.1| GENE 17 16703 - 16927 59 74 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MYRLSLIRKPIKGCRNLHRQSMRLGLDSQEEDVVMHQKNSTQIMIMKNMIKNGSMQSERV QEKNPCILLLLVNN >gi|333603647|gb|AFDH01000127.1| GENE 18 17399 - 17926 -62 175 aa, chain - ## HITS:1 COG:no KEGG:Aaci_0577 NR:ns ## KEGG: Aaci_0577 # Name: not_defined # Def: hypothetical protein # Organism: A.acidocaldarius # Pathway: not_defined # 64 175 229 345 349 74 38.0 2e-12 MAAAMDALLIEGNESSTLSKWISDACPRAEALDNRSSKSSGVLADCPLSGHELDLVANSQ RTIVVDMGTRTDSDIWKKAKVKVQVLTPDPQFTGFIDDATKILNRVPEGFSVNPDKIFNQ RVDLVIPEMGRDVLYALYSKEPWIIQQPEEVKARWRSLLGIKNTVEIQKELVQEW >gi|333603647|gb|AFDH01000127.1| GENE 19 18170 - 18247 68 25 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSMLELVTIDCPNNWNIVIYCKLAN >gi|333603647|gb|AFDH01000127.1| GENE 20 18545 - 18805 109 86 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MYQTEKSLSQGTFTACVMKRTNTPIQVITTPASAIEMPCQRFFAYKGPAGWTYPLNGINL TSKTPNLNSLGPNPQTSSLTGILKRN Prediction of potential genes in microbial genomes Time: Sun Jul 17 10:50:10 2011 Seq name: gi|333603617|gb|AFDH01000128.1| Paenibacillus sp. HGF7 contig00066, whole genome shotgun sequence Length of sequence - 25839 bp Number of predicted genes - 30, with homology - 18 Number of transcription units - 22, operones - 8 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 490 - 531 1.5 1 1 Op 1 . - CDS 638 - 1087 153 ## 2 1 Op 2 . - CDS 1068 - 1355 92 ## gi|304403722|ref|ZP_07385384.1| conserved hypothetical protein - Prom 1483 - 1542 8.0 3 2 Tu 1 . - CDS 2027 - 2908 246 ## Bcer98_1799 adenylyltransferase - Term 3229 - 3283 4.7 4 3 Tu 1 . - CDS 3297 - 5609 2112 ## COG3227 Zinc metalloprotease (elastase) - Prom 5835 - 5894 8.8 5 4 Op 1 . - CDS 5990 - 6247 159 ## 6 4 Op 2 . - CDS 6307 - 6786 57 ## CHU_0189 hypothetical protein - Prom 6812 - 6871 5.2 7 5 Op 1 . - CDS 6920 - 7408 152 ## Athe_0358 hypothetical protein 8 5 Op 2 . - CDS 7486 - 8151 367 ## - Prom 8368 - 8427 4.2 9 6 Tu 1 . - CDS 8708 - 8935 177 ## - Prom 9031 - 9090 5.2 + Prom 9283 - 9342 2.9 10 7 Tu 1 . + CDS 9438 - 9518 69 ## + Prom 9571 - 9630 2.2 11 8 Tu 1 . + CDS 9712 - 9801 62 ## + Term 10004 - 10046 2.7 12 9 Tu 1 . - CDS 9974 - 10300 112 ## - Prom 10365 - 10424 4.4 13 10 Op 1 . - CDS 10512 - 11066 299 ## gi|238927287|ref|ZP_04659047.1| hypothetical protein HMPREF0908_1187 14 10 Op 2 . - CDS 11099 - 11335 75 ## - Prom 11370 - 11429 4.3 15 11 Tu 1 . - CDS 11475 - 12203 230 ## - Prom 12448 - 12507 8.3 - Term 12479 - 12514 4.4 16 12 Tu 1 . - CDS 12523 - 13011 158 ## Athe_0358 hypothetical protein - Prom 13143 - 13202 4.2 - Term 13237 - 13279 1.8 17 13 Tu 1 . - CDS 13280 - 13507 245 ## gi|153876355|ref|ZP_02003721.1| conserved hypothetical protein - Prom 13738 - 13797 5.3 + Prom 13382 - 13441 9.0 18 14 Tu 1 . + CDS 13613 - 13687 69 ## - Term 14501 - 14534 -0.4 19 15 Tu 1 . - CDS 14559 - 15074 152 ## Sterm_0447 hypothetical protein - Term 15344 - 15382 5.1 20 16 Tu 1 . - CDS 15501 - 15737 61 ## - Term 16070 - 16107 8.0 21 17 Op 1 . - CDS 16108 - 16395 298 ## 22 17 Op 2 . - CDS 16405 - 16641 136 ## gi|332975506|gb|EGK12396.1| hypothetical protein HMPREF9374_1463 - Prom 16692 - 16751 3.5 23 18 Op 1 . - CDS 16838 - 17545 208 ## PROTEIN SUPPORTED gi|170017674|ref|YP_001728593.1| acetyltransferase 24 18 Op 2 . - CDS 17610 - 19058 1314 ## COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs - Prom 19095 - 19154 3.9 + Prom 19081 - 19140 4.6 25 19 Tu 1 . + CDS 19169 - 20347 1163 ## BBR47_51500 hypothetical protein + Term 20487 - 20540 10.1 - Term 20482 - 20520 4.2 26 20 Op 1 . - CDS 20703 - 21317 579 ## PPE_04785 hypothetical protein 27 20 Op 2 . - CDS 21383 - 22330 986 ## COG2378 Predicted transcriptional regulator - Prom 22503 - 22562 2.6 - Term 22416 - 22472 5.4 28 21 Op 1 . - CDS 22609 - 23841 965 ## COG0681 Signal peptidase I 29 21 Op 2 . - CDS 23822 - 24367 420 ## COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog - Term 24406 - 24435 -0.3 30 22 Tu 1 . - CDS 24487 - 25554 800 ## COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase - Prom 25615 - 25674 9.3 Predicted protein(s) >gi|333603617|gb|AFDH01000128.1| GENE 1 638 - 1087 153 149 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIHFSFKTNEESYALCYEIVECMMREFTIEESEAVCRINLQWSDMDFLDEDDIRYHETPD DWAYIIYYGHSSRWWARKNDPTLKPKPIHENANKGPIKWTFVPRGQESFIIKKALIDILL DPYSKEAEKDDAAIDLANILKMKKQLLSC >gi|333603617|gb|AFDH01000128.1| GENE 2 1068 - 1355 92 95 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|304403722|ref|ZP_07385384.1| ## NR: gi|304403722|ref|ZP_07385384.1| conserved hypothetical protein [Paenibacillus curdlanolyticus YK9] conserved hypothetical protein [Paenibacillus curdlanolyticus YK9] # 2 84 3 86 95 82 52.0 1e-14 MERTPKERLCWLLRLYKDKEIEAETFCDEFHLTYNHDLDDKLTETERVLFREIAAVAARF SPFEEDHQKYPGVYFTTEDVERVVERGMLDDSFFF >gi|333603617|gb|AFDH01000128.1| GENE 3 2027 - 2908 246 293 aa, chain - ## HITS:1 COG:no KEGG:Bcer98_1799 NR:ns ## KEGG: Bcer98_1799 # Name: not_defined # Def: adenylyltransferase # Organism: B.cereus_NVH # Pathway: not_defined # 1 293 1 293 293 423 69.0 1e-117 MRTEKEMFDLIEETARKDERIRAVYMNGSRTNSNVPKDIFQDFDIVYVVTETASFINDAY WIHTFGDLLMLQEPDKNDQSVGMDMDFTRSYGYLMLFKDGNRIDLRIETKESMLERYGGD KLTVPLLDKDDCLPIIPAPSDIDYQIKKPSEQLYRVCCNNFWWCLQNVAKGIWRDELPYA KQMFEQVIRPRLDEMIAWWVGTKNDFQVSIGKMGKYLKIYLPEPYWDMYKETYSDSTYEN MWNSVFRACELFRILARHVAEHFGFTYEIKDETNMIQYLMQVRELPGDAKGIF >gi|333603617|gb|AFDH01000128.1| GENE 4 3297 - 5609 2112 770 aa, chain - ## HITS:1 COG:BS_nprB KEGG:ns NR:ns ## COG: BS_nprB COG3227 # Protein_GI_number: 16078174 # Func_class: E Amino acid transport and metabolism # Function: Zinc metalloprotease (elastase) # Organism: Bacillus subtilis # 50 525 54 537 538 399 43.0 1e-110 MKKSLSVIVLSTIMALSAIPVGAASGNSASGSPADLAAPRFIGEKWIAPQGASLEAKVWA YLNAKKGILNLTGDAEQSIRITDQATDAETGTQHVRLKQYIQGIPVFGTDQTLHFDKQGN VSAYLGSTVADNGQQSLTAIAPKISAEKAIAIANKDMEKRIGKLGAQQREQQAELNFYPV NGQNVLVYITEVNVLDPSPQRETYFIDAATGKIVNQYGMLDHATGTGVGVLGDTKTFTTT QSGTQYVMQDTTRGGGIVTYSAGNTQSLPGTLMRDTDNVWTDPAAVDAHAYAAVVYDYFK NNFNRDSLDGRGMAIKSTVHYGSRYNNAFWNGTQIAYGDGDGTTFRAFSGDLDVIGHELT HGITEKTAGLIYQGESGALNESISDVFGNTIQGKNWLIGDDIYTPSIPGDALRSMENPTL FNQPDHYSNIYRGSDDNGGVHTNSGIPNKAFYLLAQGGTHRGVSVTGIGRGDAAKIVYKA LTYYLTSTSNFAAMRQAAISSATDLFGANSAQVNSVKAAYAAVGIGSPPPAQDTQAPTAP ANLVSTGKTSSSVTLSWSASTDNVGVTGYDVYRGSVLAASVSGTSATVSGLSPSTAYTFT VKAKDAAGNVSPASSPVTVTTSSSTDPTDTQPPTAPGNLVSTAKTSSSVSLSWSASTDNV GVAGYDVYNGSTLAATVTGTSATVSGLQGGTSYTFTVKARDAAGNVSPASNAVTVVTDTG SGAAAWAAYTTYQVNDLVTYQGKTYRALQGHTAMPGWEPANVPALWAVVS >gi|333603617|gb|AFDH01000128.1| GENE 5 5990 - 6247 159 85 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTVNFYNIQEIINEWNPIEIEPLLDDEYTLEIRYIIEFINEQKTDLTLHALRDKINEVFS KTFERYYTQSEQTLEIARKIMNLCL >gi|333603617|gb|AFDH01000128.1| GENE 6 6307 - 6786 57 159 aa, chain - ## HITS:1 COG:no KEGG:CHU_0189 NR:ns ## KEGG: CHU_0189 # Name: not_defined # Def: hypothetical protein # Organism: C.hutchinsonii # Pathway: not_defined # 81 140 8 69 94 73 50.0 2e-12 MNHLINWWGIDREDPEFHKLPETLQSEILQFDEPQRDAMDEDYDSLICVGLRTKYLGVTN EYLSKRISEQLNSNQTVVGLQEELFACPCCEFKTLPVKGEYDICPVCFWEDDGTTAPAFY SSPNHMTLTQAQKNFLEFGAMSESSLMHLDRDRFERYGK >gi|333603617|gb|AFDH01000128.1| GENE 7 6920 - 7408 152 162 aa, chain - ## HITS:1 COG:no KEGG:Athe_0358 NR:ns ## KEGG: Athe_0358 # Name: not_defined # Def: hypothetical protein # Organism: A.thermophilum # Pathway: not_defined # 2 159 46 204 211 125 41.0 7e-28 MTEEFKELRVLKRTRKSPKDGDIFVMEPKENLFYFGKVINAHVESKNPFFSGWYLVYLYN IPSGTKEIPSSLDPNHLLIPPMVINKQGWLKGYFETIGSEGVTEEEKSIDYGFWDFTREK FYSLSGEVLKNNPKIFTGYGLISYGGIGRCIHRLLSGQPHNL >gi|333603617|gb|AFDH01000128.1| GENE 8 7486 - 8151 367 221 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MEYAETVKSINHLYTYKIFDEQIYHKVQNLFSNLSVIDAAGIFGDLSNEAIFGLYLVLDD LKTTNEAKEHIIYKYYGLKIKEQANETVEGSLVEQILKDYKKTSFLALESLIVKLLKEDR LSENHFEKLKRSFDSKMIEKEIYSNRIRSKIKGKFPLSESELLKLFEYENYKLIEDALAQ ELIERSALPLFRLPNKGDKNKNIKTVLFNKATKLNSSCPNK >gi|333603617|gb|AFDH01000128.1| GENE 9 8708 - 8935 177 75 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVKPIDTVRVKDLTVLGDPKLANYGQMRDYCENFSYEFRGGHVYGIIGECGSGGWVLSYF FNGEGKSAERDLIPE >gi|333603617|gb|AFDH01000128.1| GENE 10 9438 - 9518 69 26 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLQGHKTHNQMALPDKFLQQVLQGFL >gi|333603617|gb|AFDH01000128.1| GENE 11 9712 - 9801 62 29 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MWKIVLNPSFAIHILTELYIFNSTFILSQ >gi|333603617|gb|AFDH01000128.1| GENE 12 9974 - 10300 112 108 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTKDTLLDLSKTLNTEYEIGIWLETRDFLERQDLTTFSIKYTDGQYNLVIKLKEFSLDAA KTVFISLVRFIEYRSTFYVREDTQDAIQYFLLSSLDSKKAFLFHIVFE >gi|333603617|gb|AFDH01000128.1| GENE 13 10512 - 11066 299 184 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|238927287|ref|ZP_04659047.1| ## NR: gi|238927287|ref|ZP_04659047.1| hypothetical protein HMPREF0908_1187 [Selenomonas flueggei ATCC 43531] hypothetical protein HMPREF0908_1187 [Selenomonas flueggei ATCC 43531] # 1 181 1 181 182 63 28.0 6e-09 MFEINYRIITEIDHWRNCNLEQIDKEGGIEGFFQLVFNNEEYGYYHNRDLAEGEEGFDLI STWFDNLMEVCLHLEASKYVALKDIETYNTWIEFIPKEDQISVSLMKSDPSISEFIILKP LSCTSYPEWKDILIPKEEFKSIVIQRTKEFIDELLEINKLFIQSQEVSSLLDLLSKINNT TIKD >gi|333603617|gb|AFDH01000128.1| GENE 14 11099 - 11335 75 78 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MHGDNDDLQEDMFFVRYPNNYALDVGWYLGTQSFLIFIVRNLNWDEPVLRKECFTYSELE ANVIQLSDWLKQLNKDFL >gi|333603617|gb|AFDH01000128.1| GENE 15 11475 - 12203 230 242 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRRSKKIILVLISFIVFVLFSLVYYVSEGSPIERYKFKKEVDSYIQEKFSQNIVTENIKY SFKNDLYWILAHPENNKELSFEISQSWNDRGLWDDFLTASWRFEVNQELESFVKSVYAQK GTASINLGKTISVVDKYSTIPYGEVPSYQDIKQELKDSIIYIHIDRAFKKESIEDEYDKV YKVIQFIKAKGYKFEQISFSYKGEQKDSPGKTFEFNSLDKVNSQDDIVKFELLSRENSSD LE >gi|333603617|gb|AFDH01000128.1| GENE 16 12523 - 13011 158 162 aa, chain - ## HITS:1 COG:no KEGG:Athe_0358 NR:ns ## KEGG: Athe_0358 # Name: not_defined # Def: hypothetical protein # Organism: A.thermophilum # Pathway: not_defined # 2 159 46 204 211 116 38.0 3e-25 MTEEFTELRVLKRTRKNPQDGDIFVMEPKENLFYFGKVINDSVESKNPFFKGWYLVYLYN TPSDTKQIPDNLDPNNLLIPPMVINKQGWLKGYFETIGSEIVTDEEKSIDFGFWDMTREK FYSLSGEVLKKKPEIFTTYGLISYGGIGRGIHRLLSGQPHNL >gi|333603617|gb|AFDH01000128.1| GENE 17 13280 - 13507 245 75 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|153876355|ref|ZP_02003721.1| ## NR: gi|153876355|ref|ZP_02003721.1| conserved hypothetical protein [Beggiatoa sp. PS] conserved hypothetical protein [Beggiatoa sp. PS] # 1 68 1 70 123 65 51.0 1e-09 MKTVFLLQHSYEINQIEYTKTIGIYSTRDKAQDVINKYKELPGFKEYPEDFYIDEYHVDK NEWQEGFLGSSAFED >gi|333603617|gb|AFDH01000128.1| GENE 18 13613 - 13687 69 24 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLYDFTKGKLGSTTFTLDFIALPI >gi|333603617|gb|AFDH01000128.1| GENE 19 14559 - 15074 152 171 aa, chain - ## HITS:1 COG:no KEGG:Sterm_0447 NR:ns ## KEGG: Sterm_0447 # Name: not_defined # Def: hypothetical protein # Organism: S.termitidis # Pathway: not_defined # 1 157 1 150 164 83 35.0 3e-15 MCLEEIKSVIQNNFLSNVYVTGVVLPSERDDELAEFVPYRSYLFFEFDDQLVKVEAIEQY SKISIAITPTLIVRVEVEDVIPTKSSISDIIFDNSLIDNKVSKIEMFNMQVNSNEIICDA LRLSITNKTNKQELFLDPQFFGINIGGFGVEEIWRYNLPEGYESKLTIIEF >gi|333603617|gb|AFDH01000128.1| GENE 20 15501 - 15737 61 78 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSDHSLTYPGNLIDRAVLPGTDVQSSVYGNVYLNGFAKTLGAPFTVTPAAPIPVFRTSNF SRMERHQNSKRDICQRSN >gi|333603617|gb|AFDH01000128.1| GENE 21 16108 - 16395 298 95 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MQLKGIIFSTEEMEEIELLKELCENMTVDGVEIVCFKVLSDLLNNRVRFEDISKEVLQIT QLQMNDYVHFWSDIDWYDSRMVESVSMKFGKLLGN >gi|333603617|gb|AFDH01000128.1| GENE 22 16405 - 16641 136 78 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|332975506|gb|EGK12396.1| ## NR: gi|332975506|gb|EGK12396.1| hypothetical protein HMPREF9374_1463 [Desmospora sp. 8437] # 1 76 124 198 209 68 44.0 2e-10 MAVFRCDCGKNLSNSRCPNDIELILFTDFEWEDIQEKVHEGADIYDAEPKYDVWRCPECL RVYVFKGVSLLYQYKLEK >gi|333603617|gb|AFDH01000128.1| GENE 23 16838 - 17545 208 235 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|170017674|ref|YP_001728593.1| acetyltransferase [Leuconostoc citreum KM20] # 66 229 3 163 166 84 28 5e-16 MEDLKAMNESMNEPVKESVSEPVNRAVNDPVNGVGNTEPDRQKSDGPNKAGVPVPVRFLE GEKVYLRPVDTGDTETYFQQLFQPQTRKLTGTQKHFTRNQIERYIEGKAQDTSSILLLIA LTETDEVIGDIALQDIDSYNRSAGIRISIDSSRNQGKGCGTEALNLMLDYGFGIVNLHRI ELNVFAYNERALHVYEKIGFKKEGVQKEALYYNHKYHDSILMALLEHEYRELHGL >gi|333603617|gb|AFDH01000128.1| GENE 24 17610 - 19058 1314 482 aa, chain - ## HITS:1 COG:BH0578 KEGG:ns NR:ns ## COG: BH0578 COG1167 # Protein_GI_number: 15613141 # Func_class: K Transcription; E Amino acid transport and metabolism # Function: Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs # Organism: Bacillus halodurans # 5 475 6 469 469 362 41.0 1e-100 MIGYPKLDERDPQPLYMQLYVHIKTGIIRGEIAEHTRLPSIRKLAGFLGLSTTPVESAYH QLLSEGYIASRPKSGYYVEKLPEPYGKLGSLPVAAPLPVQEEEPHAARKRKFRYDFHLSR NDFTAFPYGTWKKLANEMLAPDNENLLFFGDPRGERGLREQIARYLRQMRGVECSPAQVV VGADQFNLGVILSQILKRYGARLAIENPGYPLIPSIFGRTGYEILPVPLEADGIDIGRLH ATGARLVTVTPSHQFPRGMVMPVSKRLKLLQWARDTDGFILEDDYDGEFRYHGRPVPAMQ ALVPGAPVIYLGGFGQIMAPALCVSYMVLPDKLVPLFDALRREMMFEQSASRLHQHTLAL FMERGYLEKHVRRMRKLYRKKHDRLTAAVGRIFGSRAAVIGRDAGFHIVLRVRDDRPEAE LLRLAEAAGVHVSSAAFYWPGTVPPEGEKDFMVGFSGIAEEDIEPGIRKLKEAWFGDANL SS >gi|333603617|gb|AFDH01000128.1| GENE 25 19169 - 20347 1163 392 aa, chain + ## HITS:1 COG:no KEGG:BBR47_51500 NR:ns ## KEGG: BBR47_51500 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 1 392 1 392 392 488 59.0 1e-136 MNQCTLYISIKGYEKITEAIRTAFGDKQVQISPDGNQITVVDKKFFSKTTVTFSLMTLEG NPGEFEPMIRGMYGFFSQIETPHEHIQAKVLKQISALNAAVGIVSSKEIDPETMNRILEA ASRVHAVLFLPTGQLLNPEGRVVLSAQGESEVEDFTVTVSTDLIDAHIQSSPSAEARKER NMALLAEQGVPVIEHLPVIDGDEFAAIRTKEEIAARAAALCMIAMYGADLAEGADIKEAR EFIEGVIELYGASPFFTEKERAFLESDSPDPTDAVQFAWMYECYWVLLWSLGYVEELGYP DSVCDVQAAVDALRLAGNFDTFHEQAIVRSKADILEEADRIYRYDWACVDARIKGNPAPA GLDGGVVMERHRALNWLVRYMDAEWDDVSTDT >gi|333603617|gb|AFDH01000128.1| GENE 26 20703 - 21317 579 204 aa, chain - ## HITS:1 COG:no KEGG:PPE_04785 NR:ns ## KEGG: PPE_04785 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 23 191 1 167 173 186 56.0 7e-46 MQTNQNQNQNQNQNQNQNQNQNLNTLDALNRFEQLAETYIQELENYSLEELTRKPDEEQW SLGQMYVHLIKSALYRHLPIMEACRSSSGSDGMDEKTERGVEAFANGGYPPIRIQVPPSK EYTPLQPESKEQLSDGLRDVIRAMRAIQPVLADIPPAHTVEHPGFGGLNAVEWFSLVEMH YRHHLRQKERLDAFLRETKEAAEA >gi|333603617|gb|AFDH01000128.1| GENE 27 21383 - 22330 986 315 aa, chain - ## HITS:1 COG:FN1249 KEGG:ns NR:ns ## COG: FN1249 COG2378 # Protein_GI_number: 19704584 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Fusobacterium nucleatum # 3 315 17 312 314 114 26.0 3e-25 MNKTDRMLAIILRLQRKGTQRAEDLAAAFETSVRTIYRDMQALCEAGVPVVGAPGQGYSL VEGYFLPPVSFTAEEAVTLLLGIEFVEQQFDEASRTQAGAARAKLEAVLPERVRRESQRH REGMKLLAGLGSAAGNGTAALALLRGAVLQERTVRFAYAAKDAAMPGGERLTVREADPYG LVYVNSAWMLIAFCRLRQEIRHFRLSRISELALLETTFEKPEEFDLQSYKPADDRQGQVR LLFRRELANRVREMNYYYIEETQNVEQGLLVTLKVRSPEEILHWVLSWGAGVEVLEPESL RVRLREEIRRMAKRY >gi|333603617|gb|AFDH01000128.1| GENE 28 22609 - 23841 965 410 aa, chain - ## HITS:1 COG:lin1308 KEGG:ns NR:ns ## COG: lin1308 COG0681 # Protein_GI_number: 16800376 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal peptidase I # Organism: Listeria innocua # 169 285 82 188 188 61 35.0 4e-09 MRKTEIETDPFELSGRPFNKPMFGMESMDAVERKVWNGGGPEAGRPANRRKRLYLAGTAL TALLVCCAVLFMGPLGDKANGTIRDLTTPQNPQRVEAKEGLILVDDYSMSMAGQKMEYYS GGYGRLVVDPRFKTVQQFRRGDVLYYRLPAIPGFTPNPEISGSDSQTARVIGLPGEKITI EKGRVYVNGKKLDTFYGKMKTVGLDEAAYLKNMEASGRKDACPPDCVKDTKNYFNTNMTE TTVPDGSLFVLGDFWAKSHDSREFGALAQGNIQGKVLGYDEAGTRSPSQIFASGNLWFTG IPGKLGILNGQILTSPPNKIVWHFWGAREEFEGKNLRIEGIHTSDGVKKPVLLQEDGSVI WEYEWGPAYGPLNGADASLPSLIKLDESGQWRLDIYLGGKFFASMFVNAE >gi|333603617|gb|AFDH01000128.1| GENE 29 23822 - 24367 420 181 aa, chain - ## HITS:1 COG:MT1259 KEGG:ns NR:ns ## COG: MT1259 COG1595 # Protein_GI_number: 15840665 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog # Organism: Mycobacterium tuberculosis CDC1551 # 20 164 87 234 257 82 33.0 5e-16 MDDEYLKYVSELHPSDLRTLMEQHGEDVWNYAYFLTKKRDLADDIAQDVFVKAFRSVSSF RGECSVKTWLLKITRNTAYSYRRKAFFRRVILADYVRGESPSAESEFLERHLADEAWKIV LELPAHYREVLVLQSMHGMSVTEIAAALEISEGTVKSRIHRARRKAAQLAKGGFRYEENG N >gi|333603617|gb|AFDH01000128.1| GENE 30 24487 - 25554 800 355 aa, chain - ## HITS:1 COG:BS_gapB KEGG:ns NR:ns ## COG: BS_gapB COG0057 # Protein_GI_number: 16079954 # Func_class: G Carbohydrate transport and metabolism # Function: Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase # Organism: Bacillus subtilis # 10 332 5 326 340 364 53.0 1e-100 MSQAAGIRGIGISGMGRIGRLVVRKMFSDKGQTSPLKAINTIYPAETLAHLLKYDSVHGR WNADVKIADGCLVINGQSIQLTYEREPENILWGQMGIDLVIDATGKFNDRPGSQRHLAAG ASRVLITAPGKQMDFTVVMGVNDHLYDPIKHTLVSAASCTTNCVAPVLHILDQAFGVQNG WMSTVHSYTSDQKHLDNPHNDLRRARACTESIVPTTTGVGKALTDVLPHLAAHVQGVSLR VPTQDVSLVDLTVKVSRTASLDDVKAAFRKAAEGAMSPYVAYSDEPLVSVDYVGCPNSAV VDGLSLMAMGDQIKVLAWYDNEWAYACRVVELAGLMRDKAKADQSRDAEVSRMFA Prediction of potential genes in microbial genomes Time: Sun Jul 17 10:52:32 2011 Seq name: gi|333603595|gb|AFDH01000129.1| Paenibacillus sp. HGF7 contig00188, whole genome shotgun sequence Length of sequence - 23234 bp Number of predicted genes - 20, with homology - 20 Number of transcription units - 11, operones - 5 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 57 - 881 664 ## COG0095 Lipoate-protein ligase A - Prom 948 - 1007 5.4 + Prom 900 - 959 3.0 2 2 Tu 1 . + CDS 1174 - 2478 678 ## COG0642 Signal transduction histidine kinase - Term 2215 - 2251 -0.6 3 3 Tu 1 . - CDS 2466 - 4487 1452 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 - Prom 4517 - 4576 2.6 - Term 4567 - 4615 11.1 4 4 Tu 1 . - CDS 4623 - 6773 2059 ## COG0840 Methyl-accepting chemotaxis protein - Prom 6917 - 6976 10.6 - Term 6940 - 6977 3.1 5 5 Op 1 13/0.000 - CDS 6988 - 8274 1282 ## COG0826 Collagenase and related proteases 6 5 Op 2 . - CDS 8286 - 9218 827 ## COG0826 Collagenase and related proteases 7 5 Op 3 . - CDS 9232 - 10278 1080 ## COG1559 Predicted periplasmic solute-binding protein - Term 10344 - 10377 2.1 8 6 Op 1 . - CDS 10396 - 10692 294 ## gi|167462227|ref|ZP_02327316.1| hypothetical protein Plarl_06670 9 6 Op 2 . - CDS 10689 - 10991 432 ## Pjdr2_4343 protein of unknown function DUF1292 10 6 Op 3 6/0.000 - CDS 11004 - 11414 370 ## COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) 11 6 Op 4 4/0.000 - CDS 11467 - 11727 404 ## COG4472 Uncharacterized protein conserved in bacteria 12 6 Op 5 . - CDS 11842 - 14469 2716 ## COG0013 Alanyl-tRNA synthetase - Prom 14537 - 14596 2.3 13 7 Op 1 . - CDS 15011 - 15544 312 ## Pjdr2_4262 hypothetical protein 14 7 Op 2 . - CDS 15528 - 17780 2129 ## COG1132 ABC-type multidrug transport system, ATPase and permease components - Prom 17823 - 17882 1.9 15 8 Tu 1 . - CDS 17965 - 19035 1139 ## COG0628 Predicted permease - Prom 19197 - 19256 3.8 - Term 19164 - 19226 0.4 16 9 Op 1 . - CDS 19272 - 19469 195 ## Pjdr2_4355 hypothetical protein 17 9 Op 2 . - CDS 19484 - 20011 347 ## COG3881 Uncharacterized protein conserved in bacteria - Term 20014 - 20055 2.7 18 10 Op 1 13/0.000 - CDS 20069 - 21211 785 ## COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes 19 10 Op 2 . - CDS 21228 - 21647 401 ## COG1959 Predicted transcriptional regulator - Prom 21737 - 21796 4.1 + Prom 21777 - 21836 4.4 20 11 Tu 1 . + CDS 21896 - 22978 1102 ## COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain Predicted protein(s) >gi|333603595|gb|AFDH01000129.1| GENE 1 57 - 881 664 274 aa, chain - ## HITS:1 COG:BH3822 KEGG:ns NR:ns ## COG: BH3822 COG0095 # Protein_GI_number: 15616384 # Func_class: H Coenzyme transport and metabolism # Function: Lipoate-protein ligase A # Organism: Bacillus halodurans # 28 221 31 225 278 146 39.0 4e-35 MESLPLLPENITLLDRSGDLEADLLFPFALEELLIRKVGEGADPIVHLWRHPQGLVLGLR DSRLPQAPQAAVRIGREGRAVIVRNSGGAAVPLDPGVVNVTLITPKPVGKIDFHDDFETM YRFLGGVLADWNTGVAKGEIAGSYCPGDFDLSVGGRKFCGIAQRRQARALSVQAFVVVEG TGAEKAAVARSFYDEAGQGAAPDSYPDVEPGRMTSLAEYAGAGLTSPAFCRLTGEWLARQ TRVRAADYREFAADEDIAAMMRTMRERYGFKAAD >gi|333603595|gb|AFDH01000129.1| GENE 2 1174 - 2478 678 434 aa, chain + ## HITS:1 COG:BS_kinB KEGG:ns NR:ns ## COG: BS_kinB COG0642 # Protein_GI_number: 16080197 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Bacillus subtilis # 3 418 14 424 429 167 31.0 3e-41 MSISFHEVLFNVLIACSPVIVSPFFDESNPLSKKSYKPMMTLVSILAALACATFPYSSGS GIKQSLFMIPLVSSFVHGGLLPALAVSASLLLLHGFVFPASLPTDAVFLLICACFAGLYI KFHKTGGRFSAFLCPVLLSAGLGFVFMAFQIFFHRKNQLPLAPDFFSFHAFSILLHGISM AIVIYLSEFIRESRVSRLESQRAEKLNVLSELAASVAHEIRNPMTVARGFLQILSQTEVN EEKKKMYTSMAIEEMDRVQQIITSYLAFAKPQAEITEPVSVSVIIVSLVQRIQGYAGSSK VQLETHAPPSLWITANAEKLIQCLVNLSRNGIEAMPEGGRLRIEAYPEPKSVCISIEDTG IGMDAEEIARLGSPFYSTKQKGTGLSVMVAFRIIETFSGKVQVTSVPGRGTRVLVTLPQA AKPPQFAPAQDQFG >gi|333603595|gb|AFDH01000129.1| GENE 3 2466 - 4487 1452 673 aa, chain - ## HITS:1 COG:BS_yrrR KEGG:ns NR:ns ## COG: BS_yrrR COG0768 # Protein_GI_number: 16079785 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Bacillus subtilis # 86 645 28 554 584 262 30.0 1e-69 MGKELRGTAGKEKTDAGTGIWLEGIGINGINGGNGGNGSSSNSSRDVGSRSINRIDGSKT DPRRKLLLLLGLTAILALLAARLFWIQVLRPHRFSSYEVDLVKNSVLQRQKSIVLDTGRG DMYDRNLKPLTGKTIRTAIIFPVHPDYTGSAEQLRKVSGAFGVTADDWKVFVKQVKEPLL WTGSLTIPDGGKNVGQWASSKSGESVKEPLELTPSQIALLEGSGLSYVQVTDYKTRYPDH PAAAQVIGYIGQNPERISGLYARELAAGHLTLTSEIGVSGLEKTFESRLRGIGERTLSVF TDAGKRPLDALSARLISPDQSRYPLQLMTTLDSGIQRSIEERMTRRGITKGAVVVLDAAN ADIVAMASKPSFHPGEINAIDGDWANLGVKAAAPGSIFKTVVAAAALEKGVVKPDETFDC HGAWGKYGFTCWKKEGHGKLTFEEGFAQSCNIVFGEVMRRVDSDELETYARNLGLLAPVG WKGSLTGGAAVAQLDGEEGGQLFGAQTPRDDEGVRLQTAIGQRDVQVTPLQAANLVVTVL HRGKARAPRLVKEVRFRDGLTLDSFPPKFLPGAKEFLSPRATSELLREMRLVVRSGTAGQ LNAAKWPLAGKTGTAQVQSGPHETVNQWFIGYGPVDAPRYAVAVVIREAAPEAPSEAVPL AREIMDMLADQPN >gi|333603595|gb|AFDH01000129.1| GENE 4 4623 - 6773 2059 716 aa, chain - ## HITS:1 COG:CAC0805 KEGG:ns NR:ns ## COG: CAC0805 COG0840 # Protein_GI_number: 15894092 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Methyl-accepting chemotaxis protein # Organism: Clostridium acetobutylicum # 70 716 32 668 668 212 25.0 2e-54 MNKKLTQTATQLRERFQKKQAPSGGAPKPGGSGGGFLSSSMGLSNPAKSVGMKLFLIFIV SILFFVLTVGITSYQLSKSVVRGKVSEASKQTMIQASQKLDLLFGGFEDLTMQMMLDADL QRLLDTRNEVKEGTYEQLEVTRKITEKVNSYLFSNKSIKSMTLLKTDGHMINSNGASLNA TTEEITKTDWFQAVSKTSGQPLWLDTKPKGYFSGEPSVAMGRYLNSTSTSTPIAMLLMEI PTSILEKELGLIQLGDDSTMYISDASNKLIYAKDQELLAKPSPVTISEEKQKTDAGDFLS SDKQTQNVYSKFAGTGWFLVGSMPVGELVKDANVIFNLTLVIALAAAVIAALIGIFVARM IGRPLAGLAGLMKQGAQGNLKVRANLKSRDEIGMLGENFDMMMEQITTLVRQTNESAQEV LNTASEVANASKITATSAKEIAVATDEISGGAAGLASESERGNELTHHIGEKMKQVMSAN LEMGTAASGVRSSGEQGTKYMEELMDKTGQTEVMTRSMVEKVDNLKESTRSIRKILEMLH NLTKQTNILSLNATIEAARAGTAGRGFMVVADEIRKLADQSKQSIDVVAQITETIQREID ETVHVLHQAYPLFNQQIGAVKEADGIFAQVQNHMSQFIERLNAVTESISELDQSQAVLSD AMTNVSAVAEESLATSEEVASLSSEQLSISQNLVKLSDRLENLSNSLKDTLSKFTL >gi|333603595|gb|AFDH01000129.1| GENE 5 6988 - 8274 1282 428 aa, chain - ## HITS:1 COG:BH1274 KEGG:ns NR:ns ## COG: BH1274 COG0826 # Protein_GI_number: 15613837 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Collagenase and related proteases # Organism: Bacillus halodurans # 3 428 1 420 420 543 59.0 1e-154 MSMAAAVNERARGRRVRLDKPELLAPAGSLEKLKFAVHYGADAVYIGGQKYGLRSNADNF TFEEMREGVEFANRYGAKVFVATNIYAHNEDIEGIEEYLRELQEAGISAIIAADPIIMDT ARRVAPKLEVHLSTQQSVMNWQTVQFWKEEGIERVVLAREASMGDIDEIKRHVDIEIEAF IHGAMCSSYSGRCVLSNHFTDRDSNRGGCCQSCRWKYDLYAKGAPLSDPLAPDFPLYGEE EDAFMMSAKDLCMIEHISDMIESGVDSFKIEGRMKSIHYVATVVNAYRQAIDSYFENPAA YEVKPLWRDEINKAANRPLNTGFFYEAPGPEDHIFGPEDKAASYDFVGVVMEYDEKTGTA VIQQRNYFKPGTEVEFFGPGGTHFKQRVDVIRDEEGAELDAARHPLQLIRIQTEKPVKPL DMMRKRTR >gi|333603595|gb|AFDH01000129.1| GENE 6 8286 - 9218 827 310 aa, chain - ## HITS:1 COG:BH1273 KEGG:ns NR:ns ## COG: BH1273 COG0826 # Protein_GI_number: 15613836 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Collagenase and related proteases # Organism: Bacillus halodurans # 2 310 1 309 309 279 44.0 5e-75 MISKPELLITAGTVEEAKRFIQAGADAVLIGEAAFGMRLPGDVTIQDLEELVPYVHAKGA KVYAAVNNVFDNEALPEVEKYLAAISAIGVDGAVYGDPAILRMVNKAEFKLPLHWNAEMT TTNYATANYWASRGAVRAVLARELNLEETLEFKRHAKLEVQVQVHGLTNIYHSRRSLVAN YVEHLGKDANSVDRSMDNGLFLIEQERQEERYPIYEDSNGTHVMSSDDICMLEDLHELLK GSIDSLKIEGLLKSAEYNETVVRAYRQVIDAYCADPDSYKFNDEMLEPIRRLQDPSRELS FGFFYKEQVY >gi|333603595|gb|AFDH01000129.1| GENE 7 9232 - 10278 1080 348 aa, chain - ## HITS:1 COG:lin1534 KEGG:ns NR:ns ## COG: lin1534 COG1559 # Protein_GI_number: 16800602 # Func_class: R General function prediction only # Function: Predicted periplasmic solute-binding protein # Organism: Listeria innocua # 17 346 26 355 356 203 36.0 4e-52 MTGLLVIVLLLAGCAAAAAYYIRGELQPTSASDKETKVEIVSGDGVKNIASKLEKEGLIR NASVFMYYLKWKNEGGRFQAGEYVMKPGIGTDEIIAMLNNGQTAKANRLTIPEGYTVTQI ADKVGQHKGMEASAFVKAAEAYKPAEGEELLAGIPADTKLKHRLEGYLFPDTYNIPKDAT EQKLITLMVDQLDKRLQSLPADWKDKLKASGLTFHQMMTIASLIEREVVVDEERPLVASV IYNRLKIKQPLQIDATVQYALGKQKERLLESDLKIESPYNTYKNPGLPPGPIASPSLASI EAALYPAESKYFYYVTKKDGSQGHLFGETYAQHLANIEKSKQTEKNAK >gi|333603595|gb|AFDH01000129.1| GENE 8 10396 - 10692 294 98 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|167462227|ref|ZP_02327316.1| ## NR: gi|167462227|ref|ZP_02327316.1| hypothetical protein Plarl_06670 [Paenibacillus larvae subsp. larvae BRL-230010] # 1 97 1 97 98 88 55.0 1e-16 MSVKQTNELRSSFGDDIILFDEQDESTVFRILTEILHEDRHYAVLQSEEMKKEGEVSVFR VSRDSEGTLELETIEDDEEWETVSELYDELTFPEHDEP >gi|333603595|gb|AFDH01000129.1| GENE 9 10689 - 10991 432 100 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_4343 NR:ns ## KEGG: Pjdr2_4343 # Name: not_defined # Def: protein of unknown function DUF1292 # Organism: Paenibacillus # Pathway: not_defined # 4 98 3 96 97 76 76.0 4e-13 MAKEEDFQQEEAEIIYIPDDEGNEEEFEVVMKFEVDGSDKKYMMVVPVEGDEESDEVYAF RYEEDENGDDLKLYTIEDEEEWNIVEETFNTLIAEEEEEA >gi|333603595|gb|AFDH01000129.1| GENE 10 11004 - 11414 370 136 aa, chain - ## HITS:1 COG:BH1269 KEGG:ns NR:ns ## COG: BH1269 COG0816 # Protein_GI_number: 15613832 # Func_class: L Replication, recombination and repair # Function: Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) # Organism: Bacillus halodurans # 1 136 1 138 140 160 60.0 5e-40 MRTMGLDYGDKTIGVAVSDLLGLTAQGIEVIRRASPQHDLDHLRRLIGEYEVTEIVVGLP KNMNGSIGPRGELCQEFAAQLTETFNLPVRMWDERLTTVSATRTLLEADVSRKKRKQVVD KIAAVLILQGYMDSKR >gi|333603595|gb|AFDH01000129.1| GENE 11 11467 - 11727 404 86 aa, chain - ## HITS:1 COG:BH1268 KEGG:ns NR:ns ## COG: BH1268 COG4472 # Protein_GI_number: 15613831 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 1 86 1 86 90 117 69.0 6e-27 MDFMDKTVKFNVKADEIETSPKEVLLTVYDALQEKGYNPINQIVGYLLSGDPAYIPRHNN ARSLIRKRERDELIEELVRSYLKEHK >gi|333603595|gb|AFDH01000129.1| GENE 12 11842 - 14469 2716 875 aa, chain - ## HITS:1 COG:BS_alaS KEGG:ns NR:ns ## COG: BS_alaS COG0013 # Protein_GI_number: 16079794 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Alanyl-tRNA synthetase # Organism: Bacillus subtilis # 1 870 4 874 878 1140 65.0 0 MKASEIRSKWLEFFASKGHKIEPSSSLVPHNDPSLLWINAGMAPLKPYFDGRVVPENPRI VNAQKCIRTNDIENVGKTRRHHTFFEMLGNFSIGDYFKEEAITWAWEFLTDPKWIGFDPE RLSVTVYPEDTEAFEFWNKKIGLPEARIYKLDENFWDIGEGPCGPCTEIFYDRGDKYGDL NDPECWPGGENERFLEVWNLVFSQFNHNKDGSYTPLPNKNIDTGAGLERFASILQDVDSN FDTDLFQPIIEATCRIAGVKYKENEEFDVALKVIADHVRTVAFAVGDGVLPTNEGRGYVI RRLLRRAVRYGKVLGMDKPFLYQLVPVVGEIMGVYYNEVVEKREFIEKIIRIEEERFHET LSDGLAILAGMVESTRAAGGRAISGPDAFKLYDTYGFPVDLTEDFANEQGLAVDREGFEA AMEEQRERARSNRSKSGSMKVQGGALSEFTDKSEFVGYTELVVPAKVLAIVHDNEFVDAA GTGETCQIILDRTPFYAESGGQVADRGVIAGDGVRAAVLEVGKAPHGQHVHSVTVEQGIL RTGDSVTAQVSGELRGDTVKNHTATHLLHKALKEVLGTHVNQAGSLVEPDRLRFDFSHFG GITPEELQDVERRVNAQIWANTPVDISLRGIDEAKAMGAMALFGEKYGDIVRVVRVGDYS LELCGGCHVLSTGEIGLFKIVSESGIGSGIRRIEAVTSRQAYEYVDGQLQLLRDAAGVLK ANTADVPKRLDSTLQQMKELARENESLRAKLGRIEAGALEGRLKEVAGVPVLAAQVSASD MDSLRGIVDEMKAKLGSAVIVLGAVAGDKVNLVAAVTPDLIAKGLHAGKLIKETAAKCGG GGGGRPDMAQAGGKDPSKLQEALDGVEALVAGQIS >gi|333603595|gb|AFDH01000129.1| GENE 13 15011 - 15544 312 177 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_4262 NR:ns ## KEGG: Pjdr2_4262 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 14 177 2 165 165 134 41.0 2e-30 MPNPYESGGFPEGGDPFDILLLEADKCRFQRTEGGLLLLSCDGRDHEEVLVFRTFPFSEP DRYISIRTKEGEEIGIIADLRQLDDASRQELEKELHLRYLLPRVEAIRSIRQKTSGWQWD IVTQFGPERLQLPNLHEHVFRQGEDRLLLVDTGERRLEVASIRKLDPASFKQLRKIF >gi|333603595|gb|AFDH01000129.1| GENE 14 15528 - 17780 2129 750 aa, chain - ## HITS:1 COG:BS_ygaD KEGG:ns NR:ns ## COG: BS_ygaD COG1132 # Protein_GI_number: 16077935 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Bacillus subtilis # 166 734 12 586 589 416 38.0 1e-116 MALKEPPATAEELPTELLRSLGAKPAASARADMDESGRPDDRWLVVGAGQIGVYASGGAC LRRFAPEAVRSLRTQDAPQGGGCLIADTDAGPVVLVRYTGACAKGLEAAVHAANLLLETG GFDPTGGAGGERAGLCALCGEAAPGQDHDCTAGDKTERSSPGRRRVLTRLLAYTRPYRGR MVLAALFLIIAVLLELAPPLVTKIIVDDVLHPGGMAETLLIWVAALLGARLVLSALQIAR GFIGVKVGAAMMNDIRRETFEALTEQSLSFYDRRQTSQFIGRLNQDTDSMRQFLTEGVIW VASQVLTVAAILSMMLALSWKLTLVVLLPTPLLLAGVWILWPRVRQLWYKQWRALNALQT LVGDSLQGIRVVKAFGREKSEQARYGEANREMMTQTVRMEGLWQAATPLFMLVTGAGGII VWYYGGLQVLDGGLTLGTLMAFTVYLTMFFGPLQWFTQAISWTNRAVSAAERVFEIMDTP REVSDTADAVTPGRLEGSVSLDRVTYGYEKHKPVLKDISLEVKPGEMIGFVGHSGAGKST LIHLICRFYDPDRGRILIDGIPLKKLSQESLRAQIGVVLQETFLFDGTIAENIAYAKPEA SPLEIMRAAKIANAHDFIVAMSDGYDTRVGERGHRLSGGEKQRIAIARAILHDPRILILD EATASVDTETERLIQEAVSRLVRGRTTFAIAHRLSTLRSADRLAVIDKGRIAETGTHEQL MEQEGIYWKLVKAQTETALIRERDTSAEPV >gi|333603595|gb|AFDH01000129.1| GENE 15 17965 - 19035 1139 356 aa, chain - ## HITS:1 COG:BS_yrrI KEGG:ns NR:ns ## COG: BS_yrrI COG0628 # Protein_GI_number: 16079795 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Bacillus subtilis # 17 347 16 347 353 220 40.0 3e-57 MNSIFKNGWFAGLIYTLLGLLVLFFLLQIRPILGSVFHFLKAVLTPFLIAMIISYVLNPV VNLLSTRKVPRTFAVLLIYAVFLTSLTVIFMNVTPMFVKQLGELNEHMPEMTIRAQSLVD GMKNSQLLPDTVRSGIHDAIFKLQKNLSLKISDTIHGIGGTINMLLTAFIVPFLAFYMLK DFQLIEKTVLAIVPKSRRRQVVKVLVDIDTALGNYIRGQFLVCVIVGVLAYIGYWAIGMP YALLLAGLVAVFNIIPYLGPFFGAAPAVIMAATVSVKMLLLVIVVNTIVQILEGNVISPQ VVGRTLHMHPLLIIFALLVGGEVAGIPGLILAVPFFAVLKVVLQHLFLYYIHRRTV >gi|333603595|gb|AFDH01000129.1| GENE 16 19272 - 19469 195 65 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_4355 NR:ns ## KEGG: Pjdr2_4355 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 1 63 1 63 65 124 95.0 2e-27 MMRCPNCSSKDIGKIGSHQFYCWGCFIELAVNGEKMSVYQVEEDGTLSSLDDLFFEEEMP QIHAQ >gi|333603595|gb|AFDH01000129.1| GENE 17 19484 - 20011 347 175 aa, chain - ## HITS:1 COG:BH1264 KEGG:ns NR:ns ## COG: BH1264 COG3881 # Protein_GI_number: 15613827 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 1 160 1 157 157 93 33.0 2e-19 MRKARDIIGLPIFCLSTGKRAGTVRDVLFDNEWTILGVLLDAQHWYSSCRYIPAGEITAC GQDAVTIADMKSVRSYAEAESLGLIPLNGGKHKLKELPVITANGQQLGTIEDVYLLEQLG TKIIGFELSEGFVSDLMEGRKWLPMPVSLTIGEDAVIVPLNSRLEAEEIFVSKEE >gi|333603595|gb|AFDH01000129.1| GENE 18 20069 - 21211 785 380 aa, chain - ## HITS:1 COG:BH1260 KEGG:ns NR:ns ## COG: BH1260 COG1104 # Protein_GI_number: 15613823 # Func_class: E Amino acid transport and metabolism # Function: Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes # Organism: Bacillus halodurans # 3 379 4 379 386 404 52.0 1e-112 MGIYLDHAATTPLHPEVLEAMMPYYTDYFGNPSSIHSYGRAAKTALDRSRSAFSAAIGCS PADLLFTSGGTESNNTALYGVVETFGGRRAHVITTQIEHHAVLHPAERLARMGCDVTFLP VDMTGLIRIEDLEEAIRPETVLISVMYVNNEVGTIQPIEEIGRLARSHGIAFHVDAVQAL GKLPIDLSVLPVDLMSFSAHKINGPKGIGALFASRKLQLAPQVLGGSQERKKRAGTENVA GVVGFTKALEIYNNNNKEYNIQTSEYRQHMERIFLEELGPDGFVVNGNPDVSAPHIFNVS FPGSHTETLLMNLDLEGIAAASGSACSSGSLELSHVLRAMDLPESVCKSAVRFSFGFGNS IDQIETAARKTATIVKRIRR >gi|333603595|gb|AFDH01000129.1| GENE 19 21228 - 21647 401 139 aa, chain - ## HITS:1 COG:BH1259 KEGG:ns NR:ns ## COG: BH1259 COG1959 # Protein_GI_number: 15613822 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Bacillus halodurans # 1 139 1 139 139 202 72.0 2e-52 MKISTKGRYGLTIMMELAARFGEGPTSLKSIAEKHQLSEHYLEQLVAPLRNAGLVKSIRG AYGGYILSKNAEEITAGEVIRVLEGPISPVDFTEEDDPAKRDLWIRIRDSIAEVLDSTTL ASLISYQEEGKRDSYMFYI >gi|333603595|gb|AFDH01000129.1| GENE 20 21896 - 22978 1102 360 aa, chain + ## HITS:1 COG:BH1261 KEGG:ns NR:ns ## COG: BH1261 COG0482 # Protein_GI_number: 15613824 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain # Organism: Bacillus halodurans # 3 358 8 361 371 526 71.0 1e-149 MSKQRVILGMSGGVDSSVAALQLKEQGYDVIGVFMKNWDDTDEFGHCTAEEDAEDVRRVC DQIDIPFYTVNFEKEYSEKVFQYFLDEYKSGRTPNPDVMCNREIKFGEFLQKGLDLGADF IATGHYARLEERDGEFVLLRGNDSNKDQTYFLHALNQYQLSKAMFPIGHMPKPQVREIAA AAGLATAKKKDSTGVCFIGERNFKEFLSQYLPAQPGDIQTLDGEVKGRHDGLMYYTLGQR QGLGIGGSGTGEPWFVADKDLERNILYVVQGDKHPRLYSKGLSATDVNWISTRKPQGEFA CTAKFRYRQPDQGVTVTLGENRAAEVVFHEPQKAITPGQSVVFYDGEICLGGGIIDKVHR Prediction of potential genes in microbial genomes Time: Sun Jul 17 10:52:50 2011 Seq name: gi|333603592|gb|AFDH01000130.1| Paenibacillus sp. HGF7 contig00251, whole genome shotgun sequence Length of sequence - 14804 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 7/0.000 - CDS 2 - 12731 11537 ## COG1020 Non-ribosomal peptide synthetase modules and related proteins - Term 12755 - 12815 12.4 2 1 Op 2 . - CDS 12821 - 14803 1858 ## COG1020 Non-ribosomal peptide synthetase modules and related proteins Predicted protein(s) >gi|333603592|gb|AFDH01000130.1| GENE 1 2 - 12731 11537 4243 aa, chain - ## HITS:1 COG:BS_ppsA_2 KEGG:ns NR:ns ## COG: BS_ppsA_2 COG1020 # Protein_GI_number: 16078895 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Non-ribosomal peptide synthetase modules and related proteins # Organism: Bacillus subtilis # 2350 3887 1 1507 1516 1018 38.0 0 MAFEKEILFWNEKFSGEDGSLTLLPYSKAPSHAAPSVLSVSGTLSGGAAQRVIQMSKGVP LAAYMILLAGVQVLLYRYTGDSAVLVGMPVVKKAQETRRPINHTVILKNRIGDESTFKSV LNELKVSLPEAIRHQQIPFLKMTEKLELQYADGVPVVNTLVSLNELHGTDVGGNVVCDCL FQFRLEDGSIHLQIFYNENLYHAGFMTGVVDHLDRLLAGGLNNLDQEAAGAAMLSPEEER RLVHAFNETETDYESEKTIHGLIEEQAARVPEATAVVFEQERLTYRELNERANRLARTLR AKGVQPDQLVGLMAGRSMDMVVGILAVLKAGGAYVPIDPEYPEERIRYLLEDSGAKLLLT QRRLLDRVPYAGTVLALDDEHSYSADGTNLEPVNGPDHLAYVIYTSGTTGKPKGVMVEHH GLVSLKNMFRHTLGITGSDRVVQFASLSFDASCWEVFKALFFGAALYIPTADTILDYQLF ERYMDENGITAAILPPTYAAYLNPDHMRGLQKLITGGSAVSAEFVQQWKDKVRYFNAYGP TEASIVTAVWAAEPNDTGLKSVPIGRPIHNHKIYIVDKHGQPVPEGVAGELCIAGVGLAR GYLNRPELTAEKFVDNPFASGERMYRTGDSARWLPDGNIEYMGRIDHQVKIRGYRIETGE IEEQLLKIPSVQETIVIAREEESGLQLCAYVAGDQSLTVSDLRAALSQNLPGYMIPAHFV QLPRMPLTPNGKIDRKALPAPQGNALGGGEYVAPRNEAEQALADVWKAVLNTERVGVTDH FFELGGDSIKSIQVSSRLHQAGYKLEIRDLFKYPTIAQLSLHVKPVARTVDQGEVTGAAV LTPIQQWFFEREFADTHHFNQSVLLHRKDGFDETALRKVLQKLTEHHDALRMAFRKTEHG YTAWNRGIGEGEMYSLEISDFREAANPGDAVEAKANEIQSGIGLGDGPLVKAGLFRCADG DHLLIAVHHAVVDGVSWRILMEDIALGYEQAGKGEDIRFPAKTDSYLAWSGQLAAYAQSP DMENERAYWQGVERTPVPPLPKDTDAEDSLQRDSESLFAVLTRDETELLLKRVHRAYNTE MNDILIAALGTAVQKWSGHDRVLLNLEGHGREFIGTDIDITRTIGWFTSKFPVVLEPESG KDLSHQIKAVKESLRRIPNKGIGYGVCRYLSEKTDGLVWGAEPEINFNYLGQFDDDLQNN EMGLSPYLGGSPASDRQARSFVLDINGMVLDGSLSLDLSYSRKQFHRATIEKLVSLLEQS LREIIAHCAAKERTELTPSDVQFKGLSVTDMERIAEDTAPIGEIENIYTLTPMQKGMWFH SAMDPQTGAYFEQARFTLLGELDVDVFSKSWAELAARHVVLRTNFYSGAGAEPLQIVYRD KPVGFEYEDLLHLDSAGRTAYTDKKAEEDRLRGFDLERDALVRVTVLRTDEQRYHVMLSF QHILMDGWCLPQLTQELFETYSAYIRNVKPERIASADYDQYIEWLEKQDEESASRYWSGY LEGYDGQTELPKKTDAKSGSFLPEHVVCELGKSLSERMERAAKQQHVTLNTLLQSAWGVV LQKINGTGDAVFGSVVSGRPAEIPGIEEMIGLFINTVPVRVTSEADTSFADVMVKVQEQA LESGRYDYYPLYEIQARSSQKQDLIHHIIAFENYPMDEQMQQAGGSQTGGLAITDVEMAE QTNYDFNMTVVPGEAIEIRFDYNAGVFAKADVERLRGQLLHVLEQVVNDPRVKVGDLELA TAAEKTQIIKAFNDTTTDFPRDKTLHQLFEEQAERIPDAVAVVFEQKELTYRELNERANR LARTLRGEEVGRDCLVGIVVDRSIEMIVGIMAVLKAGGAYVPIDPEYPEERIRYLIEDSG ARVMLTQRHLQERVPVQSAVIVLDDEGAYHPDGSELERINESADLACVIYTSGTTGKPKG NLVSHRNIIRIARNTNYVEITEQDRVLQLSSYSFDGSISDIFGALVNGAGLVLIPREIML EIGQLAELIERERITVSLITTAFFNVLVDVNVDCLRHMRAILFGGERVSVGHVRKAVAHL GPGKIIHLYGPSESTVYATYYVVNEVAEDAVNVPIGRPISNTTAYIVDARNNLQPIGVAG ELCVAGEGLVRGYLNRPELTAEKFVDNPFVPGERMYRTGDVARWLPDGTIEYVGRMDDQV KIRGFRIELGEIEAQLLKVESIRKATVIARETASGDKQLCAYFTADGELQASRLRSALSR ELPGYMIPSYFVQLEEMPLTTNGKVDRRALPAPELSLQEGTEHTAPRTPLEADLAAIWQG VLGLEKVGVKENFFELGGHSLRATTLVSRIRKELHVDFPLKDVFVYSTVEEMAQAIANLT RLSFSSIPKAEESEYYPLSSAQKRLFILQQLEGADQSYNMPGALLLEGALDRYRFEEAFR GLIARHETLRTGFGIINGEAVQRIYSGADFSVEHIRASEEEAGEDVQKFIRPFDLAAPPL LRVGLIELAEDRHILMFDMHHIVSDGVSMDVLVEEFVRLYSGEELEPLHIQYKDYAVWQQ SEAQKEQLKRQEAYWLDVFRGELPVLELPTDFARPAVQSYEGQTLEFVVDAQKSEALKRL AAESGSTLYMVLLAAYTVLLHKYTAQEDLVVGTSIAGRTHGDVQPLIGMFVNTLAIRNYP AAGKTFLSYLQEVKETTLGAYEHQNYPFEELVEKVQTARDLSRNPIFDTMFSLQNLENKE FELEGLKLTSYPSEYGMAKFDLSLDVVEESGGLECSLEYATSLYKKETVERMSQHFEQLL GAIAEKPEAKIADLDLLTPSEKEQLFEAFNPAMSELPQVQTFHRLFEEQAIRTPDALAVV YEDKQLSYRELNERANRLAGTLRAGGVGRESIVGILAERSVELLVGVIAVWKAGGAYVPL DPDYPADRIRFMLEDSGATVLLTQTSLRESAEAWLEAKETALCAILCLDDEKSYSGNGEN AAVGVVMEGSVNGVADESAESARVSADQGDGAALGSTADSGSDGIPYETQPHDLAYVIYT SGTTGRPKGVMIEHGSLVNTAAAYRREYRLDRFPVRLLQLASFSFDVFVGDIARTLYNGG TMVIVPKDDRIDPARLHGWIQEQRITVFESTPALIVPFMEHVAQHELDMSSMELLITSSD SCSVGDYRVLQERFGSQFRIINSYGVTEAAIDSSFYDEPLAKLPETGSVPIGKAWLNARF YIVDAHLNPVPVGVLGELCIGGPGVARGYLNRPDLTEEKFVDSPFVAGERLYRTGDLARW TADGNVDFIGRIDHQAKIRGYRIETGEVESQLLQADGVREAVVIVREDGSGQKALCAYFT AGGELAASSLRSALAQELPGYMIPSYFIRMERIPLTPNGKVDRKALPAPEAGTDGGAEYI APRTPLEAKLAAIWQDVLGLQKEIGIRDNFFDLGGHSLRATTLVGKVHKELNVDLPLRDV FRHSTVEEMAAAIARMERQEHVSIPLAEEQDHYPQSSAQKRLYILNQLEGAELSYNMPGA LLLEGALDQNRFEEAFRRLIERHETLRTGFEMVNGEAVQRVYAAVDFFVEHFSAAEEEAA ETVRDFVRPFDLAKPPLLRVGLVEIAAERHVLLFDMHHIVSDGVSMDVLVEEFVRLYSGE ALEPLRIQYKDYAVWQQSETQKEQLKRQEAYWLDVFRGELPVLELPTDYARPAVQSYEGR TLEYFLDAQKSDALKQLAAETGTTLYMVLFAAYTVMLHKYTGQEDLVVGTPIAGRNHGDV EPLIGMFINTLAIRSYPAAEKTFLSYLQEVKETTLGAYEHQNYPFEELVEKVQVARDLSR NPIFDTMFTLQNTDNKDFELEGLRLTSYPSDSAMAKFDLSLDVMEDSGGLDYSFEYSTAL YKKETVERMAQHFEQLLGAIAEKPEAKIADLDLVTPSEKEQLLEAFNPAMSELPQVQTFH RLFEEQAVRTPDAAAVVYTDKQLSYRELNERANRLAGMLRAGGVGRESIVGILAERSVEL LVGVIAVWKAGGAYVPLDPDYPADRIRFMLEDSGATVLLTQTSLREGAEAWLEAKETALR AILCLDDEKSYSGDGENAAIGVVLEGSVNGGADESAESARVSAGHGDSAALGSTADSGSD GSLSASGTPDGVPAETRPHDLAYVIYTSGTTGRPKGVMIEHGSLVNTAAAYRREYRLDRF PVRLLQLASFSFDVFVGDIARTLYNGGTMVIVPKDDRIDPARLHGWIQEQQITVFESTPA LIVPFMEHVAENALDMSSMELLITSSDSCSVGDYRVLQERFGS >gi|333603592|gb|AFDH01000130.1| GENE 2 12821 - 14803 1858 660 aa, chain - ## HITS:1 COG:all1695_1 KEGG:ns NR:ns ## COG: all1695_1 COG1020 # Protein_GI_number: 17229187 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Non-ribosomal peptide synthetase modules and related proteins # Organism: Nostoc sp. PCC 7120 # 1 648 409 1074 1224 448 37.0 1e-125 YRTGDLARWTADGNVDFIGRIDHQAKIRGYRIETGEVESQLLQADGVREAVVIVREDGSG QKALCAYFTAGGELAASRLRSALAQELPGYMIPSYFIRLERIPLTPNGKVDRKALPAPEA GADGGAEYIAPRTPLEAKLAAIWQDVLGLQKEIGIRDNFFDLGGHSLRATTLVGKVHKEL NVDLPLRDVFRHSTIEEMAQTIAGLEHREHTAIPVLEKRAHYPLSSVQKRLYIQHQMEGA ELSYNMSGLMVLKGELDRGRFEAALRGLIGRHEILRTAFEMVDGEPAQVIYPEVNFVLEY RQSDEEGSREIAAQFVRVFDLEQPPLLRVGLIGLERNRHILMFDIHHLVSDGVSTGILID DLLRMYTGDNLLPLRIQYKDFASWQQSEAQSERLKKQEAYWLDVLDGELPRLELATDFAR PAVRSYEGDVLDFAIDKQQSEALRQIADDNGATLYMVFLAAYTVLLHKYSGQEDIIVGTP VSGRTHADTEPLIGMFVNTLAIRNYPSGEKMFLSYLDEIKETMLGAYENQDYPFEELVEK VQAARDLSRHPIFDSVFVMETREDRISRFGELTVEPYIEAQTVAKFDLTLEVTHEEEGMS GHFEYATKLFTRNMIDNFAEDFLTILSKICEQPHVLLKDLSLNGSSEQEEDLLEAIDIVF Prediction of potential genes in microbial genomes Time: Sun Jul 17 10:52:51 2011 Seq name: gi|333603591|gb|AFDH01000131.1| Paenibacillus sp. HGF7 contig00053, whole genome shotgun sequence Length of sequence - 2911 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - LSU_RRNA 1 - 1632 95.0 # EF451155 [D:45016..47943] # 23S ribosomal RNA # Paenibacillus polymyxa # Bacteria; Firmicutes; Bacillales; Paenibacillaceae; Paenibacillus. - LSU_RRNA 1707 - 2514 93.0 # EF451155 [D:45016..47943] # 23S ribosomal RNA # Paenibacillus polymyxa # Bacteria; Firmicutes; Bacillales; Paenibacillaceae; Paenibacillus. Prediction of potential genes in microbial genomes Time: Sun Jul 17 10:53:12 2011 Seq name: gi|333603525|gb|AFDH01000132.1| Paenibacillus sp. HGF7 contig00026, whole genome shotgun sequence Length of sequence - 73607 bp Number of predicted genes - 62, with homology - 58 Number of transcription units - 32, operones - 13 average op.length - 3.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 64 - 123 4.1 1 1 Op 1 8/0.125 + CDS 166 - 1785 933 ## COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component + Prom 1795 - 1854 4.1 2 1 Op 2 . + CDS 1875 - 2891 846 ## COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component + Term 2987 - 3023 2.3 - Term 3157 - 3211 13.3 3 2 Op 1 2/0.500 - CDS 3303 - 3500 293 ## COG3251 Uncharacterized protein conserved in bacteria 4 2 Op 2 . - CDS 3484 - 10743 5850 ## COG1020 Non-ribosomal peptide synthetase modules and related proteins 5 2 Op 3 5/0.250 - CDS 10743 - 11816 806 ## COG1535 Isochorismate hydrolase 6 2 Op 4 6/0.250 - CDS 11888 - 13600 1320 ## COG1021 Peptide arylation enzymes 7 2 Op 5 1/0.500 - CDS 13597 - 14922 1120 ## COG1169 Isochorismate synthase 8 2 Op 6 1/0.500 - CDS 14946 - 15755 776 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 9 2 Op 7 . - CDS 15811 - 16677 625 ## COG2819 Predicted hydrolase of the alpha/beta superfamily - Prom 16741 - 16800 3.8 - Term 16824 - 16871 8.2 10 3 Op 1 8/0.125 - CDS 16876 - 17871 916 ## COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component 11 3 Op 2 . - CDS 17916 - 19142 1010 ## COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component - Prom 19197 - 19256 8.4 12 4 Tu 1 . - CDS 19261 - 21765 2237 ## GYMC10_2566 KWG repeat protein - Prom 21792 - 21851 2.1 - Term 21983 - 22025 9.2 13 5 Op 1 . - CDS 22062 - 23825 1644 ## COG2376 Dihydroxyacetone kinase - Term 23843 - 23875 0.5 14 5 Op 2 . - CDS 23924 - 24349 385 ## Phep_1783 activator of HSP90 ATPase 1 family protein - Prom 24483 - 24542 4.5 15 6 Tu 1 . + CDS 24647 - 24757 153 ## 16 7 Tu 1 . + CDS 24927 - 25049 152 ## + Term 25104 - 25139 4.0 - Term 25091 - 25126 4.0 17 8 Op 1 . - CDS 25129 - 25593 143 ## Exig_1326 hypothetical protein 18 8 Op 2 . - CDS 25640 - 27481 1321 ## COG4533 ABC-type uncharacterized transport system, periplasmic component - Prom 27503 - 27562 4.3 + Prom 27522 - 27581 7.4 19 9 Tu 1 . + CDS 27607 - 28851 1379 ## COG0477 Permeases of the major facilitator superfamily + Term 28935 - 28991 13.4 - Term 28923 - 28979 17.2 20 10 Tu 1 . - CDS 29019 - 29588 567 ## COG0693 Putative intracellular protease/amidase - Prom 29778 - 29837 7.4 - Term 29874 - 29918 5.6 21 11 Op 1 . - CDS 29950 - 31173 750 ## COG1972 Nucleoside permease 22 11 Op 2 . - CDS 31178 - 32101 623 ## COG0524 Sugar kinases, ribokinase family 23 11 Op 3 . - CDS 32170 - 33528 1030 ## COG3069 C4-dicarboxylate transporter 24 11 Op 4 . - CDS 33558 - 34481 756 ## COG1957 Inosine-uridine nucleoside N-ribohydrolase - Prom 34514 - 34573 3.7 + Prom 34622 - 34681 8.9 25 12 Tu 1 . + CDS 34851 - 35711 431 ## COG1609 Transcriptional regulators - Term 35805 - 35852 3.3 26 13 Tu 1 . - CDS 35984 - 36874 402 ## COG0583 Transcriptional regulator - Prom 36923 - 36982 7.4 + Prom 36848 - 36907 8.2 27 14 Tu 1 . + CDS 36974 - 37903 540 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily + Term 38108 - 38144 1.3 + Prom 37972 - 38031 4.5 28 15 Tu 1 . + CDS 38259 - 38786 -78 ## GWCH70_0340 hypothetical protein - Term 38926 - 38962 4.5 29 16 Op 1 . - CDS 39003 - 39551 -11 ## 30 16 Op 2 . - CDS 39591 - 40067 172 ## Aave_2132 hypothetical protein - Prom 40093 - 40152 4.1 + Prom 40094 - 40153 3.1 31 17 Tu 1 . + CDS 40203 - 40844 4 ## COG0406 Fructose-2,6-bisphosphatase + Term 40852 - 40892 8.0 - Term 40843 - 40871 3.0 32 18 Tu 1 . - CDS 40972 - 41922 181 ## COG0820 Predicted Fe-S-cluster redox enzyme 33 19 Tu 1 . - CDS 42875 - 43339 406 ## COG2764 Uncharacterized protein conserved in bacteria - Prom 43468 - 43527 6.6 + Prom 43234 - 43293 6.4 34 20 Op 1 . + CDS 43439 - 44350 160 ## COG2378 Predicted transcriptional regulator + Prom 44364 - 44423 4.1 35 20 Op 2 . + CDS 44447 - 45265 109 ## COG0789 Predicted transcriptional regulators 36 20 Op 3 . + CDS 45287 - 46462 639 ## COG2814 Arabinose efflux permease 37 21 Tu 1 . - CDS 46590 - 47159 9 ## PPE_00839 hypothetical protein - Prom 47403 - 47462 4.7 - Term 47510 - 47543 0.0 38 22 Tu 1 . - CDS 47566 - 49101 204 ## Cthe_1113 SecC motif-containing protein - Prom 49179 - 49238 6.1 - Term 49537 - 49583 5.9 39 23 Tu 1 . - CDS 49631 - 49816 140 ## ECP_1922 endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases; region: ENDO3c; cl11430 - Prom 50039 - 50098 6.7 40 24 Op 1 2/0.500 - CDS 51706 - 52185 -23 ## COG3344 Retron-type reverse transcriptase 41 24 Op 2 . - CDS 52205 - 52456 148 ## COG3344 Retron-type reverse transcriptase - Prom 52700 - 52759 5.3 - Term 52935 - 52978 -0.6 42 25 Tu 1 . - CDS 53183 - 53797 -152 ## bgla_1g27130 hypothetical protein - Term 54395 - 54435 2.1 43 26 Op 1 2/0.500 - CDS 54534 - 55721 711 ## COG0477 Permeases of the major facilitator superfamily 44 26 Op 2 17/0.000 - CDS 55763 - 56506 377 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 45 26 Op 3 44/0.000 - CDS 56493 - 57314 352 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 46 26 Op 4 49/0.000 - CDS 57322 - 58215 430 ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 47 26 Op 5 38/0.000 - CDS 58215 - 59177 524 ## COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 48 26 Op 6 2/0.500 - CDS 59207 - 60775 1081 ## COG0747 ABC-type dipeptide transport system, periplasmic component 49 26 Op 7 . - CDS 60837 - 61550 136 ## COG4408 Uncharacterized protein conserved in bacteria 50 26 Op 8 4/0.250 - CDS 61576 - 62154 224 ## COG4408 Uncharacterized protein conserved in bacteria 51 26 Op 9 2/0.500 - CDS 62182 - 62976 340 ## COG0500 SAM-dependent methyltransferases 52 26 Op 10 . - CDS 63004 - 63837 359 ## COG0253 Diaminopimelate epimerase - Prom 63920 - 63979 8.6 - Term 64075 - 64109 4.3 53 27 Tu 1 . - CDS 64129 - 64731 528 ## COG0110 Acetyltransferase (isoleucine patch superfamily) - Prom 64814 - 64873 5.2 54 28 Op 1 . + CDS 64779 - 64961 88 ## 55 28 Op 2 . + CDS 64958 - 67198 2098 ## COG2133 Glucose/sorbosone dehydrogenases + Term 67214 - 67262 5.4 - Term 67205 - 67246 4.3 56 29 Tu 1 . - CDS 67321 - 68064 409 ## GYMC10_2951 hypothetical protein - Prom 68189 - 68248 2.8 + Prom 68104 - 68163 3.7 57 30 Tu 1 . + CDS 68204 - 69088 709 ## COG1357 Uncharacterized low-complexity proteins + Term 69283 - 69337 7.1 + Prom 69277 - 69336 4.1 58 31 Op 1 . + CDS 69510 - 70085 272 ## COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog + Prom 70121 - 70180 2.7 59 31 Op 2 . + CDS 70207 - 71130 529 ## GYMC10_2896 hypothetical protein + Term 71178 - 71237 6.8 - Term 71274 - 71318 -0.7 60 32 Op 1 . - CDS 71336 - 72037 567 ## Dtox_0451 methyltransferase type 11 61 32 Op 2 . - CDS 72070 - 72933 505 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily 62 32 Op 3 . - CDS 72953 - 73606 476 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 Predicted protein(s) >gi|333603525|gb|AFDH01000132.1| GENE 1 166 - 1785 933 539 aa, chain + ## HITS:1 COG:lin2073 KEGG:ns NR:ns ## COG: lin2073 COG0614 # Protein_GI_number: 16801139 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-hydroxamate transport system, periplasmic component # Organism: Listeria innocua # 324 532 100 309 313 94 27.0 7e-19 MTDISSPHTEPVSTAHLFYIPFRITEVDSQVKELGRSERTGCSRIFVVLGGSGVLRIHEE PYEVSRGSIYLCDDFQKLDVTSHGLLKGVLIEYRRLGTADPDTGVLQCPEPLHGCPEKLL RQADELQKLWREPKLGGPFRIQQLFIELMNGLYEELASRERTGRSWLKQSVSFMEAHFVE DLTRDQLAERANVSPEHFSRAFRKYTGRTFNEYLTLLRIRGAQKRILTGSPDLNTLAHEI GYKEGAYLSRKFKESVGVSPTVYRGKSKRIAALNQNYTAILTALGITPELGVYTGWTEKI AGGPEIPEGQKFNPYGRTSASFYEAVAAARPDIIISYDTEEENRSLLPLAPVLELPFKTM SWREQFRMIADIVNKRREAEEWLALYDKRLIPINRQLDRQLGSRGTAAVWEIGPDKAYGF GSSHGRSCQILYDDIGFRPPERMLEQGLSWRGYVETSVEAIVQYAADHIFITSLPCDSHG RQRLMRLFRSPEWLALDAVRRRRVYLLDQPELFFGFDPLSSLEQLRILMNVLTPDHKFT >gi|333603525|gb|AFDH01000132.1| GENE 2 1875 - 2891 846 338 aa, chain + ## HITS:1 COG:lin2073 KEGG:ns NR:ns ## COG: lin2073 COG0614 # Protein_GI_number: 16801139 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-hydroxamate transport system, periplasmic component # Organism: Listeria innocua # 75 336 44 312 313 188 36.0 1e-47 MFSHQRFARYRLQAAATAFLLLAAVILSGCGGREDSAAGNTVSGTMNVQASDVSGNGTGT TKEAKFKKVSTVKGEIQIPARPQRIVAEEYLGSLIALNVIPAGAPGLTLNNYYYKKALNG VADTGTYGKPSVERIAGLEPDLIITGNAETYEQLSKIAPTLVIPYGTLKNAREELEYFGT LLGKETEAKSWLADYDRRIAAAKSKVDAVLPANASFSIMESSDKNIWVYGDNFGRGGQPV YQALGRKPPAAISDELMKKQWAEISAEMLGRYAGDYIIVTANNKTAEDFRTDPVWSTLPA VKNGKLYVWPEERSWYYDPLAVLSQTEELAEWLVKTGK >gi|333603525|gb|AFDH01000132.1| GENE 3 3303 - 3500 293 65 aa, chain - ## HITS:1 COG:Rv2377c KEGG:ns NR:ns ## COG: Rv2377c COG3251 # Protein_GI_number: 15609514 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Mycobacterium tuberculosis H37Rv # 3 65 4 66 71 79 57.0 2e-15 MGNPFDDQSGSFRVLVNVEGQYSLWPAFIRTPDGWTAVLEEGTHQECLDYIESSWTDMRP ASLRE >gi|333603525|gb|AFDH01000132.1| GENE 4 3484 - 10743 5850 2419 aa, chain - ## HITS:1 COG:BS_dhbF KEGG:ns NR:ns ## COG: BS_dhbF COG1020 # Protein_GI_number: 16080249 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Non-ribosomal peptide synthetase modules and related proteins # Organism: Bacillus subtilis # 6 1296 7 1278 1278 1200 49.0 0 MIESALRLPLSGAQQGIWYAHQMDAQRSVYNTAEWLEIHGNINEELLEQALRLTVQEAKW LHARFGEDGDGPWQELGPETDWALLKIDVSRMNHPHAEAEAWMRQDLQKPVELAEGPLFT QALIRLASDRWCWYQRIHHILIDAYGYALLHRRASQIYTALASGRPVPPHNFGSPEQVLR EEETYRASGQHGQDRAYWLDKLADAPDSSVMGRGGNSPDGSPLRQSGRLAAAASRVLTES AAEAGCSWAEAVLAAAAAYVHRMTGSADIRLGLPLMNRLGSSALNVPGMVMNVLPLCLTV KPETSWGDLRLQVAAELRKLRRHQRYRQHDLVRDLGLLGERRRLYGPMINIIPFVETPSF ASAGTVRHSIYAGPADDLSLHIYEASDGDGLQIDFDANPGIYSEQELSGHRRRFLSFLES AAFADPDTPAGLLDTLLPSEKDLLLNRWIDTACDVPGDSPAELIRRRAELSPHAAAVLCG GRTLTYAELDRQAAVLGAELRRLGIGPERLVAIALPRSEAAVVSILAVLRLGAAYMPVDP DYPAERIAYMLDDAQPACLLTDTESMRSLPDTGNVSLLLLDELGKGDRAESPGSTPKTGD HADAECHPLRPSPLHPAYVIYTSGSTGRPKGVPVTYGGLANLLDAMQRKFRLQEGDSFLS VTTIAFDISVMEILLPLIGGACLDIASRELILEPGALARRIRSTGASIMQATPTLWQSLV SARPGRLDGLRVIAGGEALPLSLQLALQELGCEVHNQYGPTETAIYSTAAALPGGSMIKP PIGPPIANTRTYILDAGLQPVPPGAEGELYIAGAGVARGYLNKPVQTAERFVADPWGEPG SRMYRTGDLARWLPDGSIDYLGRADHQVKLRGFRIELGEIESRIAGQPGIAQAVVVVRED RPGERRLTAYVVPEELHEPDHAQLKNQLQQELPEYMVPLVWVTLASLPLTPNKKVDRKAL PVPQMSGTAKEASARTPHEELLCQVFAEVLGLSSVGIDDDFFRLGGHSLLAGRAVLRIRE TTGVDVRLSGIFEAPTVRELAQLLGRKGTPIPPVVPAAPGVAVPLSRAQRRLWFLYRLEG PSFTYNIPLVCTLSGKLDRQALKQALLDVTGRHEPLRTVFPETPDGMPQIRIMDREAAAD MFVFQVVPAAGLEGDDWQESLDREVRHGFELSSEIPLKAVLFEREEEEYVLLLIVHHIAA DGWSLSVITSDLSAAYAARIAGRDPSFSDTPVRYGDFTLWQEKLLEEEGEPQSLMGSQLA YWKEALRGLPEELPLPADHPRPSVSGQAGGVIPFRIGEELHAQLLELAAEGKASLFMVLH AALAALLSRLGGGEDIPVGSPAAGRPDEATGSLVGMFINTLVLRADLSGQPTFRELLARV RYTDLSAYENQELPFERLVEALSPARSRSRHPLFQIMLVLQNTPATRLDLPGIVSKLELR GTGSSKFDLTFELTEHRRSDGEPCGIEGLLEYSADLYLPNTAEAFTRRFLKLLEQAAAQP DQPVGRISVLLEEERLALTAKLKPEAAEQTIAGGKLSASGRTLTELFEGQAALRPDAPAV VYGTQTLSYRQLNERANRIARLLMEEGAGPEQFVALALPRSADLPAAVLGVLKTGAAYLP LDPDYPADRLAYMLEDAGPSILVTSADAAAGLPEGSGLKVVVLGDFYCEERLRRLPDSDP EPALRAGRHNALHPAYLIYTSGSTGRPKGVVIPHENVIRLMESTEEWFGFDETDTWTLFH SYAFDFSVWELWGALLYGGKLVVVPFSVSRSPSEFLDLLEEQGVTVLNQTPSAFYQLIQA DREQSERASALSLKHVIFGGEALDPGKLEEWYSRHPDHFPRLVNMYGITETTVHVSYYPL DRRSAEAGSGSVIGVPIPDLDVYVLDDNLEPVPFGVSGEMYVSGAGLARGYWQKPELSAQ RFVADPFGTPGSRMYRTGDLAKRFADGSLEYLGRADQQVKLRGFRIEPGEIEAVLEKHPA VAQAAVVLREDQPGDKRLAAYIVPAQSGEVPDTGMIRLHASAALPDHMVPSGIVVLDSLP LTVNGKLDRKALPAPVYASANGSRSPRTPQEEVLCGLFAETLGLEDVGIDDGFFELGGHS MLAVRLMSRIREVWGKDPGIGLLFETPTVAGLAARLEEDTGDGALEMLLPLRSNGSGAPL FCVHPAGGLSWCYAGLMKHLNPDVPIYGLQARGIAGPDRLPQTLGEMTEDYIRCIRTVQP AGPYRLLGWSLGGNVAHAMAVQLQKEGESVEFLAMLDAYPSHYLPLRGEPDEEEALTALL ALGGYDPDSIGDEPLTMETAIEILRGDNSALASLSVETIRQLRVTYENSVKILAAYVPEK YEGDLLFFHSTIIPDWFDPIDPDMWIPYVGGQIERHDIECRHKDLCQPGPLSIIGRMLAG KLSSANMKEGEGSFHGQSV >gi|333603525|gb|AFDH01000132.1| GENE 5 10743 - 11816 806 357 aa, chain - ## HITS:1 COG:BS_dhbB_1 KEGG:ns NR:ns ## COG: BS_dhbB_1 COG1535 # Protein_GI_number: 16080250 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Isochorismate hydrolase # Organism: Bacillus subtilis # 1 226 1 225 232 289 60.0 7e-78 MAIPSVQSYPMPTAEDLPVNRVSWTPDPSRAAFLIHDMQQYFMACFEPGQSPGVELTEHI RLLANRCRELGVPVIYSAQPGAQTPEQRRLLQDFWGSGIGPDPREQQIIAELEPGDNDIR LTKWRYSAFQKTDLAEQLKAMGRDQLIIVGIYAHIGCLMTACEAFMRDIEAFMVSDALAD FSREKHDLALEYAAERCAFTLTTEQLLAQWAKETPEGVNFGQAEAGAVSNAAGSLNGAAA GIAETAAADGPTDGPEATGAPDPYAFALSALRQQVAGLLRERPDAIGDEDNLPEYWGLDS IRIMTLAERWRSLGASVTFAELAEEPTLLAWSRLLASRTVTFVPNGDYYDAAARGER >gi|333603525|gb|AFDH01000132.1| GENE 6 11888 - 13600 1320 570 aa, chain - ## HITS:1 COG:BS_dhbE KEGG:ns NR:ns ## COG: BS_dhbE COG1021 # Protein_GI_number: 16080251 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Peptide arylation enzymes # Organism: Bacillus subtilis # 1 569 1 538 539 714 64.0 0 MSEDYPYWPDEFVRKYREAGCWRGETFGGMLRERAAAHGDRTAIVGGEARVSYAELDLNA DRLAAGLKRLGIRKGDRVVVQLPNVPVFFDVIFALFRLGALPVFALPLHRRSEIVHIASY SEAAAYITIDKYAGFDYRTLASEVKAEVPGLRHVLVAGNPGDHLSLEETYVHEIPAIPGK LHPLQVDRSEGQASDGPEDQPDTRDAGPAPGDTAFLQLSGGSTGLPKLIPRTHDDYIYSL RRSAEVCGLDGGSVYLAALPVAHNFPLSSPGALGTLYAGGTVVLARSGSPDEVFPLIRKE KCTIAAVVPPLALVWLEAARTRGENLHPLQVLQVGGAKFSEEAAKRVKPELGCTLQQVFG MAEGLVNYTRLDDAESVITGTQGRPMSPLDEVLILDDEDRPAAPGTIGHLLTRGPYTIRG YYKAPEHNARSFTPDGFYRTGDLARLTPEGNLVVEGRAKDQINRGGDKVGTEEVENHLLA HPAVRDAAIVAMPDDFLGERSCAFILSRDPHTGGDELRSFLRRRGLAAYKIPDRFEFIDS FPQTGVGKVSKKDLRQRIGALLLEEAGVKS >gi|333603525|gb|AFDH01000132.1| GENE 7 13597 - 14922 1120 441 aa, chain - ## HITS:1 COG:BS_dhbC KEGG:ns NR:ns ## COG: BS_dhbC COG1169 # Protein_GI_number: 16080252 # Func_class: H Coenzyme transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Isochorismate synthase # Organism: Bacillus subtilis # 15 429 15 396 398 339 49.0 8e-93 MMLGQKEKLLSPADLLDKYSEGSAFYFGSPRQTLLAEGELVRLSVDGKGEDLERLPRRVA DLLTGVRAGNAAEPVIVGAIPFTVNSGVRPELFVPLQTLWAGPLPESEEALAEIAGDTDR PVFAGEAAGGTFNIVSFPTESDYEAAVRKGLEQLRSGKLRKVVLSRSLRLENCPPVQTGR LLRRLAAGNTRGYTFAVPLRGQQSAAAGSGHSAGQGQGAAPASGAHTLIGASPELLVARS GQLVTANPLAGSAARSSDPAEDKRRADALLLSAKDRHEHAVVVEAVASALRPYCRKLDVP AEPSVIGTKTMWHLSTKVTGELMEPAASSLELAVAMHPTPAVCGTPTGPARTAIRELESF DRRYFTGMVGWCDAAGDGEWAVTIRCAEIGEDAVTLYAGAGIVEGSDPAAELAETSSKLK TLLLAMGMDPETGSGGGGKSV >gi|333603525|gb|AFDH01000132.1| GENE 8 14946 - 15755 776 269 aa, chain - ## HITS:1 COG:BS_dhbA KEGG:ns NR:ns ## COG: BS_dhbA COG1028 # Protein_GI_number: 16080253 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Bacillus subtilis # 13 268 5 260 261 253 59.0 2e-67 MKESPFAGAPYTGISGKVAVVTGAAQGIGEAAAAVLAGLGAVIAAVDLQGEKVERSAEAL ASSGASAAAYAADVSDSRSVEEVIARIEREQGPVDILVHAAGVLQHGTGVTLGDEEWERT FAVNTTGAFYVCRSVISRMSKRRRGSIVLIGSNAGTVPRYGMSAYAASKAAAAMMLKCLG LEHAAEGIRCNIVSPGSTDTPMQRGMWEDESGEFKTISGSPELYKLGIPLGKLATPEDIA WAAAFLSSDQAGHITLHDIRIDGGATLGR >gi|333603525|gb|AFDH01000132.1| GENE 9 15811 - 16677 625 288 aa, chain - ## HITS:1 COG:BS_yuiI KEGG:ns NR:ns ## COG: BS_yuiI COG2819 # Protein_GI_number: 16080254 # Func_class: R General function prediction only # Function: Predicted hydrolase of the alpha/beta superfamily # Organism: Bacillus subtilis # 6 288 29 306 314 250 47.0 2e-66 MVSRVETPRRTFQGETAYGGVEIPNTEQRVMRSSRTNLSYRIMTALPPGPPPATGYPVFY VLDGNSVFATVAEALRVQCRRPEVTGVKAALVVGIGYPTDEPFHPQRYFDYTPEKTAKYT RKPDGTVLPEQGGAAAFLDFIQEELKPVIAREYPVDITNQTIMGHSLGGLFVLHTLFTRP EYFRTYIAGSPSIHWNREWLDVREKLFTAALDAGSLQRSSGIRALIAMGELENAHPSGNY GMAKEMAARLSNMESRGLSVQWHSFEDEGHVSVLPGLVSRGLRFASRP >gi|333603525|gb|AFDH01000132.1| GENE 10 16876 - 17871 916 331 aa, chain - ## HITS:1 COG:alr2583 KEGG:ns NR:ns ## COG: alr2583 COG0614 # Protein_GI_number: 17230075 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-hydroxamate transport system, periplasmic component # Organism: Nostoc sp. PCC 7120 # 53 329 55 326 328 113 28.0 5e-25 MRNSFLNKIVTVKVLAVICTALMLTACGANPNAGSADGKAGDTSASAAPIGAAGGQERTF TDEFGHTVKVPASPKRVFAPYLEDSLTKLGVTPIAQWSAGGQGNSYLKEKLSQVPKLDFS SGAPSPEVVTELQPDLIILQTESYASNGVYEKYSKIAPTYVFKNASSDPASSLSKIGELL GKTEEAKQALQAHDKKVQEAKAKLQQAAPGKKAAVIRFASRGVSLMGGKYLAGAVVHDKL GFGMSKLVDGKNSAAISLEVLPDLDVDYIFMMNQYGQGTERMKEITESPFWKKIPAVQAG HAYEVNSEYWLGSGMIADEMMIDDVVKLIAK >gi|333603525|gb|AFDH01000132.1| GENE 11 17916 - 19142 1010 408 aa, chain - ## HITS:1 COG:BS_ybbB_2 KEGG:ns NR:ns ## COG: BS_ybbB_2 COG0614 # Protein_GI_number: 16077232 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-hydroxamate transport system, periplasmic component # Organism: Bacillus subtilis # 126 392 3 266 266 150 32.0 6e-36 MKPSKSAARIEGRGERAAATRPYLTDIRVYMDSHYHEQLTVRQLAERVHVSPKYFVDLFK KTFGQSAMDYLTDLRINRAKRYLSEPEPLLLREIAQRVGYKDEYYFSRKFKKEVGMSPTE FARSSKHRIAAWSPDMTGYLIALGLTPLAAPLDPKWTAHYYYSYRKKIRYALKLTDPYIT GTFEENADLMARLRPDAVVAGDGLSDEQQDTIRKIAPALFVPTSRELGWREYLRLVAVFL KRTDEAEQWIRGYDKLADEARIQSEGALGDDRILIVRLYGKGLYSYTNRGMEDVLFKDLN LRQVSPGKQSSPIRPEDIKALDPSRILVLVCPESESRAYWLALQHSPEWKTIGAVRSGSI YPISADPWLEYSPVAVARMLDEAMLLFTGKCPNAFLDHVHGGSPPADL >gi|333603525|gb|AFDH01000132.1| GENE 12 19261 - 21765 2237 834 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_2566 NR:ns ## KEGG: GYMC10_2566 # Name: not_defined # Def: KWG repeat protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 834 1 835 835 1084 63.0 0 MPADEMQVTSLVSGFLPQGAELMTIEKPSPHTAIHSPDLTGDGIPEIAAVYRLNGEMYLL VLTYRDGVWQKAAAVKGTGYAVTLLSSAPVLRAGLDNLLVGWQIGSIWSKLSVYEWTPEG LTDAAPADMSYSYIEVGDMPGLAGRDGKAEVALWTHDTGKAYSVQVLRWSNGAFVPAPDV YPYYFPRVVRYYEEMTRRHPDYTFYWYYLADAQYRAGLPEAALVSVRKALSFPNPFPSRD KLLELRLNILAALGRSPQARMPALFPASLKTTSGLKWGYIDSEGRLAIRPMYEDAADFQR NGLAVVGRNGKYGLIDRSARFVAPPVYDSINPFSGRRAVVIDSEGFKLIDEKGKVLTGRA YPFIANMEDGRAVFYVTGGGSGDTGTSRYGYLDAQGREVIPAQYEEANDFHDDRAVVKIR DSDYALISPDGRKLASYPYAYVGPHGDGLLAFQQTSGGKYGYIDERGKVVIAPSFTVGLP FHDGRAVVSTSEDYKWTYGVIDKAGRYVIKPAYNDIRDLGEKRFALGRALDPEQPFLGSV YAIADWNGALLSDFLYDEVSDFKGGLASVAGAEQTYFINRSGKPAPGYPRVEGSGSLTLE RGGLIKAYTDRRLAYLNRAGKVIWHQNTVISLTPPYSVREEKYKPNRDYLVYYPQVEGMK DETAQRSVNTKLKEWSQVKPVPGDRKLDYSYSGDFEVAFYKEKLLELELTGYKYPFGAAH GMPSKTYAILNLENGRMYALKDLFKPGSDYVRILSGIVGRQIKEDPQYAYVFTDSYTGIK PDQPFYVTENALHLYFFPYDIGPYAAGFPTFTVPFARIGAIVDREGEFWKAFHA >gi|333603525|gb|AFDH01000132.1| GENE 13 22062 - 23825 1644 587 aa, chain - ## HITS:1 COG:FN1840 KEGG:ns NR:ns ## COG: FN1840 COG2376 # Protein_GI_number: 19705145 # Func_class: G Carbohydrate transport and metabolism # Function: Dihydroxyacetone kinase # Organism: Fusobacterium nucleatum # 1 329 5 332 332 311 49.0 3e-84 MKKMMNKPENLVKEMCSGFVLAHPNLELDRKYTIIRKKTIRPDKVTLISGGGSGHEPAHA GFVGKGMLDAAVCGDVFASPSQIQVYQAIRSTASRKGTLLIIKNYSGDIMNFKNAAHLSG EDGIQVDFVKVDDDIAVEDSLYTVGRRGVAGTVLVHKIAGAAAEAGMSLEQVKQAAQKAV DRTKSIGFALSSCTVPAKGSPTFSMEENEMEYGVGIHGEPGIRRERVLTADDLARRMVAE LLQSLPEDEDNPPEVAVLVNGFGGTPLQELYLLNHSVQRELASRNVAVYKVFVGNYMTSI DMEGASLTLMKLDDELKNLLRAECDTPALTVREYTEPASFAEVVPAEEALGDKPVSFSVV TPEESAVIHNGRVSLDNMIYLIDTMSEIIIENEVPFCELDAHAGDGDFGMSVAKGFRQLK TEWNELTDGASDIGSFLDACSLIIMEHCGGASGPIWGSAFRAAGRSVRGKAGLDAADIAE MLQAAVKGIQDTGERSFGRGAAVGDKTLIDALVPYADSWEASASAGTDLKLAGAAAAEAA VEGAKKTEAIVARMGRAGTVGERSIGYPDAGAHALGVIFTGLAQALK >gi|333603525|gb|AFDH01000132.1| GENE 14 23924 - 24349 385 141 aa, chain - ## HITS:1 COG:no KEGG:Phep_1783 NR:ns ## KEGG: Phep_1783 # Name: not_defined # Def: activator of HSP90 ATPase 1 family protein # Organism: P.heparinus # Pathway: not_defined # 6 141 10 144 144 89 33.0 4e-17 MAKEISRIKIGAPAGNVWDALTRPELVKQWQYGSELVTDWRPGSEIRFRNEWEGQVFEQW GTVQEIVPDRLIRYTLFAPRPGLEDRSENYFVMSYLLEDDGDWTTLTIEKTDNRPEAGSG VTEDDEVSPVLSALKKLVEGN >gi|333603525|gb|AFDH01000132.1| GENE 15 24647 - 24757 153 36 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNEAQPYLEAVRQRYPELPLDTAEKSEPGKTTTFGS >gi|333603525|gb|AFDH01000132.1| GENE 16 24927 - 25049 152 40 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLSRIIFYKGTFALQEALFGVGNGVPEALESGLETLEALE >gi|333603525|gb|AFDH01000132.1| GENE 17 25129 - 25593 143 154 aa, chain - ## HITS:1 COG:no KEGG:Exig_1326 NR:ns ## KEGG: Exig_1326 # Name: not_defined # Def: hypothetical protein # Organism: E.sibiricum # Pathway: not_defined # 1 136 1 139 170 107 43.0 1e-22 MKKFRGKKRYFRNLWKKVNSFYLEPDNESWFDFWHFHLDFYGIGEHSLKLRREHIKVHLA LYHILLKRLERIEKPSQSWICIHEQDAGLDAVYIHTPNPNGDNFPHKLESIDWHYKLPNT FKDLIDLEQFNVGYYKSDDGNIYFIQSKEQDINL >gi|333603525|gb|AFDH01000132.1| GENE 18 25640 - 27481 1321 613 aa, chain - ## HITS:1 COG:lin2150 KEGG:ns NR:ns ## COG: lin2150 COG4533 # Protein_GI_number: 16801216 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, periplasmic component # Organism: Listeria innocua # 7 604 5 576 590 244 28.0 3e-64 MQTVLPFLELRLFFRDREHQKPFPVTVDELAGIWHCTPRYVKLIVRTLCEQGWIDWQPGR GRGNKSKLTLVLDSDELLLEEVRRRTEQGEVHEAMELMNRFGGPAVKDRFMDWISEGIGF STAGVPDSPQETLCMPVFRSITTLDPGLVYYAFDCHMARQLFNTLVEYDEEQRLVIPCIA HSWESSADAREWTFYLRKNILFHHGRELTAEDVMFTLNRLRHDQGRYDSGWMFRDIERMD APDWKTVVIRLREPNYLFLRFLCTIAAAIVPEDVVRRDEAAFGEMPVGTGPFRVECRNEG RCVLEAFPAHFRGRAHLDRVEVLIFPREESGRLKEPDWTSIMTSHGETSGARREALVSGG RGWRNMETMFSCSSMLVFNQRKNGPHNHPLFREAFHHILDREALIADLKGERLCPAGGFH PQEDMGKREGAFYPVKSRSEIMALLEKSGYAGEVLELVTYSHHEEDACWIQARARTFGVC IEIRVRNAEEWSDRASLQRYDCQLYGIVLGGDEVRELEVYLQNNFFAALWDRATEEVVFR ETAAILREPGEAARRERFAQLERWIRQTHAILFLVHKTTNTAFHQSVRGVRINSYGWVDF YHIWFNKGAAALS >gi|333603525|gb|AFDH01000132.1| GENE 19 27607 - 28851 1379 414 aa, chain + ## HITS:1 COG:BS_yqjV KEGG:ns NR:ns ## COG: BS_yqjV COG0477 # Protein_GI_number: 16079430 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus subtilis # 15 392 8 388 410 236 36.0 9e-62 MKAKTTKRFRIPSFHPVAWGVIIGTFLSRTGFFMTIPFLGIYLGKVKGIDPATIGAILAV SLFVGTLGSFAGGALSDRLGRYPVMIASMAAWSLVFIGFAFADATWLFFVLSALNGLFRN VFEPAARALLADVTPAESRAEVFNARYFAINIGGAVGPLIGLKLGVGGTSSLLPFLVSAA IYAVYAALLVVFMFSFRHLLQSRDEPGATVKQMMKIVFSDKVFLYLLLGNFFVAGAYSHL DTTLSQYIGHDRVAVYSSLFVVNTLCVLVLQYPLTRFMKRYTSLTSLKTGCLLFGAGLFG FGLFENTALLFLSMIVFTMGEILCFVVGDVLIGEIAPERLRGAYYGASGFAFLGQSLCAW IGGLLLQGLGFGQGPVIFGILTLLAFAAFPFFHRGQQLRENPAGAKTSELSESC >gi|333603525|gb|AFDH01000132.1| GENE 20 29019 - 29588 567 189 aa, chain - ## HITS:1 COG:CC1780 KEGG:ns NR:ns ## COG: CC1780 COG0693 # Protein_GI_number: 16126024 # Func_class: R General function prediction only # Function: Putative intracellular protease/amidase # Organism: Caulobacter vibrioides # 2 183 47 228 267 88 37.0 8e-18 MRMGFVLFDGMTALDFIGFYEAVTWMGILKAKENVTWELGADKTEVTDDRGMTVKIHRVK PDLSEYDLIFIPGGLSTRRLRSDTEFISWIKTAAPVPYKVSVCTGSLLLGAAGFLEGRRA TTNPSAYGLLAPYCAEVVKNRLVRDGDIFTGGGVSASLDLGLYVVESLTDAAFAKEVQAK MHYPYYTSP >gi|333603525|gb|AFDH01000132.1| GENE 21 29950 - 31173 750 407 aa, chain - ## HITS:1 COG:BH1446 KEGG:ns NR:ns ## COG: BH1446 COG1972 # Protein_GI_number: 15614009 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside permease # Organism: Bacillus halodurans # 1 406 1 405 406 351 49.0 1e-96 MSILWGLVGCMVILGIAYLMSDHKKKINYRTVIVGLGIQLVFGYIVLKWDTGKQILEVVS TGFTNLFHYGYEGLSFVFGSLADKTQATGNIFAIRVAMLAVFITPLIGILYRFGIMQFFM RVVGGGLGKLLKTSRAESLAAAGNIFLGLQEIPIMIKPYMKFLTRSEMFAIMVGGLASVA GGIMVAYAALGIPIAYLLSASLMSAPAGLIIAKIMIPETDRPIEAGSRELEEEDSETKDN LINIISKGASAGMRMAVQIIAMLIAFVSMVALLNGLLGWVGSWFGYGDLSLQMILGWLFA PLAFVIGVPWSEATITGSFLGQKFVMNEMIAFGSFAKEMEHLSPKTIAIVSFALCGFANI GSMGILLGSMRSLAPERSTEVGRLAFKAVIAASLANLLSGTIAGMFM >gi|333603525|gb|AFDH01000132.1| GENE 22 31178 - 32101 623 307 aa, chain - ## HITS:1 COG:SA0258 KEGG:ns NR:ns ## COG: SA0258 COG0524 # Protein_GI_number: 15925971 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Staphylococcus aureus N315 # 3 306 4 304 304 207 38.0 3e-53 MKKICILGSINMDSSLLLESLPHEGETIFATGKLVGPGGKGFNQAVSAARLGASVHFIGK VGADEYGKQLVSTLQQEGIHTEHVGVNPDLPTGEALILFSSSGSNMIVVSAGSNMGITTQ DIEESREIIKLSDVILAQFEVPIEVIQHIFTIAKEEGKVTVLNPAPAKAIPPTLLQVTDF LIPNESEMHMITGCDTNSEQDMVQGAETLLKQGVGCVIVTLGDRGSLICHRDGNLSIPAE KVSAIDTTAAGDSFIGSFCTKLRRQERKQLGHVAEAVKFASRFSSIVVQRKGAFQSIPYA YELAEMS >gi|333603525|gb|AFDH01000132.1| GENE 23 32170 - 33528 1030 452 aa, chain - ## HITS:1 COG:VCA0665 KEGG:ns NR:ns ## COG: VCA0665 COG3069 # Protein_GI_number: 15601423 # Func_class: C Energy production and conversion # Function: C4-dicarboxylate transporter # Organism: Vibrio cholerae # 1 450 5 454 459 235 37.0 1e-61 MTELIFGLIVVVLAGWMISKKVNATVVLFVAGIVLLYGAVFMGHSVLPAEAATGSRWFDP MKSITNNFISNLGNIGMTIMVLFGFSSYMTKIGANEVTVQTLMKPLSGIKSVYVLVPVIF VVGNLLSLVVPSASSLAILLMATLYPVLKRIGMSGLTAGAVIATTATIIPTPLGADNVIA AQTLGIDLMEYVMKYHAVISIPTLILMTFAHYFWQKYMDKKHPETDTIDESKLGTLREDL PPTYYGFLPILPLVLITVFGIFVKSIKIGLVEITFISLIVAVIVEMIRKRKIQQVFEELM VFFRGMGDGLAMVVSLLVAASLLVDGLKALGIVDMLTDSVKDLNGAGMILMFAFSGITAL IGLISGGGLAVFYASVGLLPDIAQNVGIDGAMLSIPMQLIANLVRSVSPVAACIIVVCSI IQKSPMAVIKRTSVPIIVGIISTLVLSYVMFS >gi|333603525|gb|AFDH01000132.1| GENE 24 33558 - 34481 756 307 aa, chain - ## HITS:1 COG:STM0051 KEGG:ns NR:ns ## COG: STM0051 COG1957 # Protein_GI_number: 16763441 # Func_class: F Nucleotide transport and metabolism # Function: Inosine-uridine nucleoside N-ribohydrolase # Organism: Salmonella typhimurium LT2 # 8 306 7 305 306 323 55.0 3e-88 MSVRKTPIIIDTDPGIDDAVAIGVALHHESLDVKLLTTVAGNVSVDKTTQNALKLIEFFG TGTPVARGAKQPLCMPYEDSSHIHGESGMGGYEFPEPTTNIHAEHAVHAIRETIMRSEEK ITLVPIGPLTNIALFLAMYPELKSRIERIVLMGGSASAGNHTQTAEYNIYADPEAAKMVF ASGLDITMVGLDVTRKATLTPDNVVKIRDLNETGNMLYSMFQHYRGGSLKTGLKMHDLCA IAYIVKPELFKTQKYFVDVENAGVYTVGTTIVDQNNRYNKEPNVNVCLDIDVDTFRTWAI ECIAKAK >gi|333603525|gb|AFDH01000132.1| GENE 25 34851 - 35711 431 286 aa, chain + ## HITS:1 COG:BH3727 KEGG:ns NR:ns ## COG: BH3727 COG1609 # Protein_GI_number: 15616289 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus halodurans # 2 286 43 325 331 280 47.0 2e-75 MLNYVPNDVARSLSKKSTKTIALFVPDITNPFFNELALAVEKVTQLYGYTTILCNTNESA KIERQYIQNLKQKYIDGFIMATNTLTEEEIDQLDIPMVAVDRSSSPVVPTVTSKNREGAH LAVQALLQQGCNKIAHIRGPKGLWIAEERCQGYLDLVENMSWFTPKLIANGNFQLKEAAE AVKKLFKEHPDIDGVFAGNDLMAIGTLRALQEHGIRVPDQVQIIGYDGISLAEMVFPELS TVSQSIYEMGMLAARILIKKIEQIHLDEENHQLEVKLIQRGTTRHG >gi|333603525|gb|AFDH01000132.1| GENE 26 35984 - 36874 402 296 aa, chain - ## HITS:1 COG:BS_yvbU KEGG:ns NR:ns ## COG: BS_yvbU COG0583 # Protein_GI_number: 16080452 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus subtilis # 1 289 1 289 292 309 51.0 4e-84 MTHSQLMLFVKIVETGSFTKAGEQLNMTQPAVSRAISALESELGVTLMIRDRKSGVILTD IGLRLLAIFRDILHGYNKVEQEVTAEKGFEVGTVRVGAFPIVSAHFLPKILRVIGEKHPG LTFELYEGTTDEIKKWLDSRTIDVGWIIPPINELETIPFFRDELCLLLRDDHPLQSRPTI HITDLDNEPMIVCRGGFVTPIYELFQQFGTTLRAKYDGHNINTALSLIQEGLGVSIVSKT SLSLSALPPNVRIRTIDPQPFREIHLAVPSLKEAPHGVKLFLQTARELYLSGDPNR >gi|333603525|gb|AFDH01000132.1| GENE 27 36974 - 37903 540 309 aa, chain + ## HITS:1 COG:BS_yvbV KEGG:ns NR:ns ## COG: BS_yvbV COG0697 # Protein_GI_number: 16080453 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Bacillus subtilis # 2 290 3 291 305 280 58.0 2e-75 MQLSRTLTFILLTFLVMMWGVNWPLSKYALEFAPPLLFAGLRIFIGGLILLLFALPRYRK LNMKHTWNIYLISALLNIILFFGFQTFGLNMMPAGLFSTIVFMQPVLLGIGAWLWLGESM TGFKIIGLILGFIGVAVISINDGSGNISSAGILLGLASTITWTFGTIYMKKTSTRVDAIW LTTLQMIFGGIVLLVAGTTVENWTDIVWNQPFISTLSVIAIFCTALTWLVFFLLVRSGEA GKIGSFNFLVPLIAIVISVLFLGETITPKMVVGLILILIGVALVNLKLKSLQKRDKKHTG NMKTRRDHV >gi|333603525|gb|AFDH01000132.1| GENE 28 38259 - 38786 -78 175 aa, chain + ## HITS:1 COG:no KEGG:GWCH70_0340 NR:ns ## KEGG: GWCH70_0340 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_WCH70 # Pathway: not_defined # 53 174 15 112 112 77 39.0 2e-13 MQRTTRPTYNPSNRPTSAQTNRTASGQSRAASPQVNRDTVSQAGRAGSQSGSTGNVKVVV CRKCKSPQIVANKRGYSFAKMFKTLGWMALLPLLFLVVTVAGSYMVWTNVKLGSGGGSSV NGGFFESLTTIIGILCWISFTLSLPVSILVGFVGRSEIVNGCMNCGFKWKPAKRK >gi|333603525|gb|AFDH01000132.1| GENE 29 39003 - 39551 -11 182 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKEPSEQLIEMLGHPYSPKNVQALLQSFGIKRMPPANSYFNDDIIWSVKTSIRIDLYRAP KINDLTGLNYTKEDGWIIGAIHFLAPGSDDRIKTPFPGNLPKGITMRSTPDESIKAYGQP ELDEECEWPGFSGRILAWRKPGINIAINYADSEIGSRMISCTACLIGCIGAWRNDNPEVF AP >gi|333603525|gb|AFDH01000132.1| GENE 30 39591 - 40067 172 158 aa, chain - ## HITS:1 COG:no KEGG:Aave_2132 NR:ns ## KEGG: Aave_2132 # Name: not_defined # Def: hypothetical protein # Organism: A.avenae # Pathway: not_defined # 1 158 1 156 156 157 49.0 1e-37 MNPLDYIEYLGHSSIYPPLVDQLSRDKITWRPNVRRNLNTTYFVSGEGLVLHFDIGDENN GIIKKSEGDYIFDELTMTIMEENKKHGKYVGQIPYGLLQNDSRSQIEAKLGTPTRRAEEL DNYYLDGLVWTAAFEGERFQFLKLAVPTNGKRKYGLCP >gi|333603525|gb|AFDH01000132.1| GENE 31 40203 - 40844 4 213 aa, chain + ## HITS:1 COG:L152977 KEGG:ns NR:ns ## COG: L152977 COG0406 # Protein_GI_number: 15673696 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Lactococcus lactis # 18 193 2 174 189 92 32.0 4e-19 MRKTYFAVEKEKKEFMKTCVYMVRHGESPKMEGNERTRGLTLKGESDAQIVAQLLKDEGI DTFISSPYKRAILTLEGLARSLGKEMIIIEELKEIVFIGDDKILPDTEVYPLVKKMFSDP DFSLPGGESFTNCQNRVVTIFKNIISEYKGQKVAIGTHGAVMTMMMGYFDPRFDLDFLLK TSKPDIYKMEFDEGMLTSTARLWRVSLPEPKGQ >gi|333603525|gb|AFDH01000132.1| GENE 32 40972 - 41922 181 316 aa, chain - ## HITS:1 COG:Cgl1973 KEGG:ns NR:ns ## COG: Cgl1973 COG0820 # Protein_GI_number: 19553223 # Func_class: R General function prediction only # Function: Predicted Fe-S-cluster redox enzyme # Organism: Corynebacterium glutamicum # 1 316 43 364 366 197 39.0 2e-50 MDAIFKHNVGEYERMTMLPQFLRDELTRMLGPNVCSIVPVKELTSKQVNKVLFAIAGDER VEAVRLTYERGWKSYCISTQCGCGFGCRFCATGTIGLKRNLTADEITDQLLHFRLNGHVL DSVSFMGMGEALANPYVFDAVTILTDPHLFGLGHRRITISTIGLLPGIDKLTREFPQVNL TFSLHSPFDDQRSELMPINDRFPLYDVLKALDRHIEHTGRKVYIAYILLRGVNDSAAHAE AVAELLRGRGPVEHLYHVNLIPFNSTEVTPDNYQQSEPNRIKAFVRILKSKGISVTVRTQ FGSDINAACGQLYRSE >gi|333603525|gb|AFDH01000132.1| GENE 33 42875 - 43339 406 154 aa, chain - ## HITS:1 COG:CAC3689 KEGG:ns NR:ns ## COG: CAC3689 COG2764 # Protein_GI_number: 15896921 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 1 139 1 134 137 105 38.0 5e-23 MAAIVYLNLDGNAEQAIEFYSEALSATEVKKVKFGDIPQDPNYPMPENELNMIMESSIEF AGGKIMMSDILPSMKAITGELVKGNNILISLVMDDKKKLEEYFTNLSVGGYVIMPLSNTP WSSCFGMLVDKFGVNWKFNSDADKFLDNVIASKQ >gi|333603525|gb|AFDH01000132.1| GENE 34 43439 - 44350 160 303 aa, chain + ## HITS:1 COG:lin0395 KEGG:ns NR:ns ## COG: lin0395 COG2378 # Protein_GI_number: 16799472 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Listeria innocua # 3 302 2 305 306 210 38.0 3e-54 MEKVERLLSIIMILLKKKIVSTNEFAQLFNVSKRTILRDMETLSLSNIPIYSIHGVHGGY GIMDEYKVDKRLLSSSDLENILTALGGLEQILISEEVELTIKKIEAMVSPLAPKSSIQLS FYDWEGRSEIIQTLRTCQESILKRRLVSFDYIDKNGTATNRIVEPYQLHFSETSWYLKGF CLHRMSNRTFKLSRIDHLHMDEQTFSPRDDLLEQEREASYQPQLVAIQALISPSIKDQFI ERYGRKSIENYSSECLLATIYVPQNSTGFQFLASFGTNLKIVEPKTYVEDFRNYLNKMMD IYS >gi|333603525|gb|AFDH01000132.1| GENE 35 44447 - 45265 109 272 aa, chain + ## HITS:1 COG:all0345_1 KEGG:ns NR:ns ## COG: all0345_1 COG0789 # Protein_GI_number: 17227841 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Nostoc sp. PCC 7120 # 1 113 21 133 135 125 57.0 7e-29 MFKISEFSRLSKVTLKTLRYYDQIGILKPRKVDHDTGYRYYSADQLLELNRILIYKELGF TLPQITQLLHEDITLENIQGMFKLKKSEIQQLIDTEQAKLARIEERMQLIEREGQVETGQ EIRIKAEDARQFLFLQAHGKEEDIPHLFHTFNPLLTKEIRQLAQGPQVVLWKEIDGKEDE FEFVIGYFLTCELPLSPDPFQLRTLPPEPMMATMAFRSDSNFACTACVDLAKWIEKNNYQ IKENEPGREIYYPLSTKEDAQLMEIQIPISHR >gi|333603525|gb|AFDH01000132.1| GENE 36 45287 - 46462 639 391 aa, chain + ## HITS:1 COG:BS_ybcL KEGG:ns NR:ns ## COG: BS_ybcL COG2814 # Protein_GI_number: 16077257 # Func_class: G Carbohydrate transport and metabolism # Function: Arabinose efflux permease # Organism: Bacillus subtilis # 1 377 1 377 390 232 36.0 1e-60 MKNNRIIYVLALAAFLIGTIEYIITGVIEMIAADLGVSTSEAGLLVTVFALSAAIVAPIL IALTINVDRKKLLMAALSVFIASNGLMFVNLSYETVLWVRIIQGASGGITTVVAMAVATR LVEKERRGNAIGIILMGLSSSLVLGVPIGTFFSEMFGWRVLFIGIGLLSVLPLLIIYKKV PSIKEEEKVTLRMQLSILRNSKILTALVITLFYVGGYSTLFTYITPFLQATSSLSITEIS GVLFLAGICSFVGSRVGGQLADAKGSKFTICLGLLLQGATLLLFTLADVNLFVLILVLMI FMLATWSISPAQQLYLVTLAPRNPDIALSVNTSFIQFGFALGSGLGGLVISRTSVLYLNW LGLVAVGIALLLAILLFKKMSSGIAAPIGTK >gi|333603525|gb|AFDH01000132.1| GENE 37 46590 - 47159 9 189 aa, chain - ## HITS:1 COG:no KEGG:PPE_00839 NR:ns ## KEGG: PPE_00839 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 1 189 1 189 189 301 85.0 1e-80 MSWSKLKQNLESFLCPALDRRVEYRATSYRYLPDKAGDCYITVDKKNVLNMNDATNLIRW YQTELEIKNDPDIQIPISNEEIEAARITTKGTVPEDRLKVIVRNRKSSEYAKELLSAQAS LSKSNFIAVANKFLTTSIEESLESHDILLNILALVDRRVGKKRILNMSEKMKLKHPIVQY FYELRRSTL >gi|333603525|gb|AFDH01000132.1| GENE 38 47566 - 49101 204 511 aa, chain - ## HITS:1 COG:no KEGG:Cthe_1113 NR:ns ## KEGG: Cthe_1113 # Name: not_defined # Def: SecC motif-containing protein # Organism: C.thermocellum # Pathway: not_defined # 208 467 284 548 618 76 28.0 3e-12 MDNTRYVFENRDKRVSPKLVNRLFYLYKKNSVIKNNTKIKNRSNELKWLRKKFVKIVNYY CMEQFNQKEEQEDIHMSLRNFHSQNFINYHFDYPNTSWFQYLRALEINSKVIDTIFIKDN LTTLEIEKGLLICILYDFIYQACRKNILNDLLYEKEKYKFESFLTSFSVQQFSKVLRRFG IKEKEFINRFFPILRNENEVTLSYPTDKYYREEFSLGICHKDRIFFPRSNFILDEFWNYI LEHEEMKGGKGKRGRKDDFVEEYTIMLLKDFFGKESVYNNLYDENGDEQDIIVLYGEYTL CFECKSEVLKEPFRDSNKSDTRMKQNFDRVIQKAYIQGWRVKNNINNKNSKYYNSDKKYS RKIILDLCEQDHTKVLKICITINNYLNLSNRVNKYLEFKDDDKDYPWVVDIFSLEHIFNK VRAINRDEKYFINYVQDRIKSYLGVQALGAEELECFGYYLRYGKFNNALDGWFMTNLGNG YTTFVLDYIPSPEINLMQLYFLELASITEQD >gi|333603525|gb|AFDH01000132.1| GENE 39 49631 - 49816 140 61 aa, chain - ## HITS:1 COG:no KEGG:ECP_1922 NR:ns ## KEGG: ECP_1922 # Name: not_defined # Def: endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases; region: ENDO3c; cl11430 # Organism: E.coli_536 # Pathway: not_defined # 2 56 332 386 390 65 61.0 5e-10 MNIHTASLDELEAVLDINRNMAKEIVKMRVAKGRLSLDDISTIKGVGAKTISKIQDTVSF D >gi|333603525|gb|AFDH01000132.1| GENE 40 51706 - 52185 -23 159 aa, chain - ## HITS:1 COG:SA2010 KEGG:ns NR:ns ## COG: SA2010 COG3344 # Protein_GI_number: 15927789 # Func_class: L Replication, recombination and repair # Function: Retron-type reverse transcriptase # Organism: Staphylococcus aureus N315 # 1 151 130 280 338 111 41.0 5e-25 MFYHHGYTKELSYTLAALTTYNGSLPQGAPTSPYISNILCQRMDKRLLALAKKMNADYSR YADDITMSGDENVRQYIETIKSIIINEGFDINYKKLRLQTDNNMQEVTGLIVNEDVKVKR KYKKRLEQHIYYCKKFGVYSHLKKLNLKVNHILKNTYMV >gi|333603525|gb|AFDH01000132.1| GENE 41 52205 - 52456 148 83 aa, chain - ## HITS:1 COG:MA2102 KEGG:ns NR:ns ## COG: MA2102 COG3344 # Protein_GI_number: 20090946 # Func_class: L Replication, recombination and repair # Function: Retron-type reverse transcriptase # Organism: Methanosarcina acetivorans str.C2A # 2 80 76 154 563 66 43.0 1e-11 MNSNKFYKEYQIAKSNGSLRTISTPSYNMKTIQRWVLDNVLSSFAIHSNAFGFVKGRNIK DNALLHTKKKVVLNIDIKIFSYY >gi|333603525|gb|AFDH01000132.1| GENE 42 53183 - 53797 -152 204 aa, chain - ## HITS:1 COG:no KEGG:bgla_1g27130 NR:ns ## KEGG: bgla_1g27130 # Name: not_defined # Def: hypothetical protein # Organism: B.gladioli # Pathway: not_defined # 30 176 163 314 321 63 29.0 5e-09 MLLKEVIKENGIELYKDTIKVGLDQIDDDITTLIFFDDISGSGGTIVSFLKENESELIGR KIIIRLIVITETAHEVIDKYLANQTELDVTVIAEFKYDKVFKNHKFLNDSHRLLINDFEE TIWGKGNNNVMGFRDSQLLVGFSHNIPNNTISSFWYHTDFSGKREEWNSLFKRYTQLNRK NKKKTRSNQNLSVKREGGGSKIGL >gi|333603525|gb|AFDH01000132.1| GENE 43 54534 - 55721 711 395 aa, chain - ## HITS:1 COG:BH2079 KEGG:ns NR:ns ## COG: BH2079 COG0477 # Protein_GI_number: 15614642 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus halodurans # 1 393 2 392 392 501 71.0 1e-141 MRGALSWPFLRLYMLTLLYFSANSILNVIIPLKGESLGATNTTIGIIMGAYLFTTMFFRP WAGHLIHKHGPIKVLRTILVINGVALLLYTFTGLGGYFAARMLQGVCTAFFSMALQLGII DALPDKDRSQGISMYSLCASMPNIMGPLLALGMWHTADSRYFTAAMITIAILTGVVGYSA RMEKKEAEPAAGQPGPGATMLHSFGHLVKNPHLFKCSVLMLTASLVFGAVTTFIPLYAMQ IESGNAAIYLMIQATAVVAARFALRKKIPSDGKWHSSFMIVIMLILAAGAQCVSFSAAGG TVFFYVGAGLTGIAQALLYPTLTTYLTFVLPQHDRNVLLGLFIATADLGVSLGGVVMGPV ADLSSYSFMYLICAILGLSMIFFAYDRRKIFARSR >gi|333603525|gb|AFDH01000132.1| GENE 44 55763 - 56506 377 247 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 1 238 11 251 329 149 39 3e-35 MLRVKGVGKSYKTGGLFSAKKQNVLADISFECGQGECLGIIGESGSGKSTLGRLIIGIEE PDQGTVLFEGKRIGARNARRGNISAVFQDYTSSINPFYTVEQAIMEPLKLQNKARKEASG KIDLLLHQVGLDSSYRTKYPHELSGGEAQRVCIARAVSTEPKCILLDEAISSLDGSVQIH VLELLKRLREIYGMGYIFITHDIQAAAYICDRVVFMRQGQIEETVNIAHLKDVQSAYARK LLQMIIT >gi|333603525|gb|AFDH01000132.1| GENE 45 56493 - 57314 352 273 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 21 253 38 264 329 140 33 3e-32 MNSLEVKNLKVWDHLTGEVMIPNSSFHVKQGSCLAIVGESGSGKSLTCRAVMRLTKANIR QSGDILFGGVNLSELPEKEMRKRRGKQLCMILQNGMRAFDPSCVVGVHLKETLAEHFGWS RDEITAKMKKAMESVRLQDPIAVMNKYPHQLSGGMLQRVMIALAIVLEPDLVIADEPTTA LDTISQFEVVEQLAQLRKRMGCSMIFISHDLGIVRKLADEVLVMKEGEVVERGPTPAIFS DARHEYTRYLVSSKLSLHHHFRNLMGGVSHAEG >gi|333603525|gb|AFDH01000132.1| GENE 46 57322 - 58215 430 297 aa, chain - ## HITS:1 COG:BH2076 KEGG:ns NR:ns ## COG: BH2076 COG1173 # Protein_GI_number: 15614639 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Bacillus halodurans # 1 276 1 276 293 380 72.0 1e-105 MERFKRIVKDKPAVLSLFILVTTMAAGIFAPLIAPHAPGEVHMELRFAGPSLEYLLGNDH LGRCVLSRLIYGIRPSVLWVMAALILTVGIGAFFGFIAGYFRGRTDAVVMRICDVMLSFP GYVMILAVIGIVGVGFENILIAFVCTKWAWFARVIRTSVMQYAEADYVKFSKALGAGSVQ IMVKHIVPVSLPDIAVLSSSSFGSMILQLSGFSFLGLGVQAPNAEWGMMLNEAREVMFSK PELMLAPGLAIVLVVSAVNFLSDALQAALDPKLRTSDPKPQGQTAAAGTAIQGNGVA >gi|333603525|gb|AFDH01000132.1| GENE 47 58215 - 59177 524 320 aa, chain - ## HITS:1 COG:BH2075 KEGG:ns NR:ns ## COG: BH2075 COG0601 # Protein_GI_number: 15614638 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Bacillus halodurans # 11 320 1 310 310 437 74.0 1e-122 MVPCAKKEMAMGSYILKRALLSLPLLVIISFLTFVLNHLSPLDPAEVVLHAQGVPNITEE LIAETKGALGLDQPFLTRYFNWLVSCLQLDFGHSYVTGKPVWSLLGPAFLNTLKLTLVSM AAIIVLSIVLGVICAWKEGKRVDKSVRGVSFLLTSMPSYWLASLMAWYFSVHLDLLPTSG MDSFKSYLLPVTVITISYTGIYFRIVRSSMIGQLNEDYVLYGRASGLPERKITMHILRNS LQVAISVFCMAIPIILGSTVVVENLFAWPGLGTLSVKSILSRDFPIIQAYVLVLAAAFVL FNTLSDMILAAMNPKLRKGM >gi|333603525|gb|AFDH01000132.1| GENE 48 59207 - 60775 1081 522 aa, chain - ## HITS:1 COG:BH2074 KEGG:ns NR:ns ## COG: BH2074 COG0747 # Protein_GI_number: 15614637 # Func_class: E Amino acid transport and metabolism # Function: ABC-type dipeptide transport system, periplasmic component # Organism: Bacillus halodurans # 38 522 1 486 486 736 75.0 0 MISIALLAGCAGEKKANTGSTERSKELVYATAKDINDMNPHLYTGSMPAQGMVYESLVEN TEDGIKPLLAESWETSKDGKTYTFHLRKDVTFHDGEPFNAEAVKKNIEAVQKNASKHSWI KLSAKIVSCNVPDEFTVELNLSEPYYPTLLELSMTRPYVFISPKNFVNGETKDGVSGYNG TGPYKLTEHKTDQYATFEANENYWAGAPKVKKVTAKVLPAGEMTFLALQKGEVNFIFTDD RGADSIDVEAMNRLVQSDDFQLVRSKAMNTKMIVANSSKSGPVHEKAVREAIWYSIDRET VSKQIFSGMETAAYTLFSSNVPYADVDLKKRGYDPETAKKILEEAGWSLESGKAVRTKDG NPLAMKLYYDVNSSSQKTQAEFLQHTLTTMGAKLDLIGEESSSIAKRRATGDYDLLFNQT WGLAYDPQSTIAAFTAEGSYLHTTRGIPKAAELYKKIDDVMVSADEKTRRSLYAEILTLV HDESVFIPITNGSVTVLAPKNLKGISFKQTQYELLFERMYFE >gi|333603525|gb|AFDH01000132.1| GENE 49 60837 - 61550 136 237 aa, chain - ## HITS:1 COG:BH2073 KEGG:ns NR:ns ## COG: BH2073 COG4408 # Protein_GI_number: 15614636 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 1 231 202 431 436 320 70.0 2e-87 MGSPLEAETRNSSLYVHPPLFMNDFSLNVLFGEAAPKKFVYKMFPEGPITPGLIRDMVAC WKEMTAIIRKLNIDGLNLLKFMTDDNYPVRPESLSRHEIENFLHFETIHQEYLVYIRYTS LLIDPFSEPDQDGKYFDFSAVPIRQIFVNHEGYWDIPRMPKEDYYRIKIIQGIARYVDSS CPTIDTFIATYERKIEEAARHRLQGELLSDAFTVQSFEEDLKRIRSEIEIRPGSKNI >gi|333603525|gb|AFDH01000132.1| GENE 50 61576 - 62154 224 192 aa, chain - ## HITS:1 COG:BH2073 KEGG:ns NR:ns ## COG: BH2073 COG4408 # Protein_GI_number: 15614636 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 1 172 1 172 436 229 61.0 2e-60 MGDFQRVLVLGTGPASIQLAVLLKKVADCRVGIAGRKSVRSEHFFAALKQSNRRIRADIQ NEKHRRLQGECVIDDVFHGYESITGRWDTVILSVTADAYIGVLQQIHERLLRQVRCVVLI SPTFGSNSLIRHYMTDIRADAEIISFSTYLGDTRWRHDKPSDQVITTGIKKKSVHWLDEG SIRSCDEASYVV >gi|333603525|gb|AFDH01000132.1| GENE 51 62182 - 62976 340 264 aa, chain - ## HITS:1 COG:BH2072 KEGG:ns NR:ns ## COG: BH2072 COG0500 # Protein_GI_number: 15614635 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Bacillus halodurans # 5 264 5 264 264 306 60.0 2e-83 MHKDEQFLQTLTGFQAKFTHFTDRYEGTAQRSAELEAILDDYSAFITNEANEESWEQLNR QDPGHMSRLVEDLRKTSAFCVAIMEKYRAWKLLNGDAERTEYFRNIESCIEKEFGSFQVT ADSKVLLVGSGSFPMTPLYIAKQTGAEVVGIDIDREAVELGRRVVEELGSGLKIRLENVF AEHLDGIQEVTHIIFSSTVANKYELLDQLDRLTNRHVIVAMRYGGGLKSLFNYPMQEVNR RKWSLVETVLRPGHVFDIALYQKA >gi|333603525|gb|AFDH01000132.1| GENE 52 63004 - 63837 359 277 aa, chain - ## HITS:1 COG:BH2071 KEGG:ns NR:ns ## COG: BH2071 COG0253 # Protein_GI_number: 15614634 # Func_class: E Amino acid transport and metabolism # Function: Diaminopimelate epimerase # Organism: Bacillus halodurans # 1 277 1 277 277 377 64.0 1e-104 MKHEIDFVKCNPTQNMTILVRTNHLAEDYKPIAAKMMSYDSVYAEQVGFIEKPGNYEADA NLRMAGGEFCGNACMALAAFLASEKGMNPDDFMEIVLEASGTEQLVTCQVQKVKEEYVCR LAMPVPKKIDRKTIKFEGDDLDIVTVRYPDFLHIVIEVDHFNETVRNRAEALAKLLGATS EAKVIGILLFKSHSDELAPLIYVPPLDSLIWERGCGSGTASLGAFLSWKHKGTVSAQIKQ PGGTITVMAEWEEDEVTSLSIEGSVGIVAQGRAFVDV >gi|333603525|gb|AFDH01000132.1| GENE 53 64129 - 64731 528 200 aa, chain - ## HITS:1 COG:MA0513 KEGG:ns NR:ns ## COG: MA0513 COG0110 # Protein_GI_number: 20089402 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Methanosarcina acetivorans str.C2A # 7 194 9 197 199 216 51.0 2e-56 MTDPKPMTEKQKMLAGKPYKAFGEELLLERQHAKEVLFDYNALRPGEVEKRNELLRALLG RTGKVFFIEPPFRCDYGYNISLGENFYANYNLTVLDCNRVTIGNNVLIGPNVSVFTAGHA IHPEPRANEVEYALPISIGNNVWIGGGAILNPGVSIGDNTIIGSGSVVTKDVPANVIAAG NPCRVLRPITEDDRNQFREA >gi|333603525|gb|AFDH01000132.1| GENE 54 64779 - 64961 88 60 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFTVRAKTLSVYISYIPFTGIYGKMNYESISALTFESERRIAFVYKQTLSAIPNQKDVWE >gi|333603525|gb|AFDH01000132.1| GENE 55 64958 - 67198 2098 746 aa, chain + ## HITS:1 COG:SMa0564 KEGG:ns NR:ns ## COG: SMa0564 COG2133 # Protein_GI_number: 16262748 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose/sorbosone dehydrogenases # Organism: Sinorhizobium meliloti # 407 743 40 353 356 207 40.0 7e-53 MIMHCKQVALSLCFCLLLALIPVPGTAKAESVPAPWKQQNIGSPALAGSASYDPGAGRFE VSGSGTDIWGKSDQFNFVYQPWTGDGSIIALVSSQTNTHDFAKAGITIRETLKPDSKHAD LLLTPSNGFTFQYRTETGGASESEKIASTSPAWVKLERKGNVIRGYVSNNGLNWGDLGTL TLKMNASVFVGLAVSSHNTSKLSTATFTNVTVNAAGDVFPPTEPTNVQARSVTDTSAEIA WTASLDDVGVTGYDLYKDDVLTQANVAGISYTFTGLKPATTYRFTVKARDAAGNSSAASA PLSVTTTSGSDTESPAAPAGLASSSKTSTSVQLTWTAATDNVGVYAYDIFTDGKLAGSTD KTSFNVTGLAANTSYSFTVKARDLAGNVSPASKALSVKTNPASSEPYTPEVVASNLETPW AVDFAPDGRIFFTERNSGRVRVIVNGQLKSAPVITLGSPFYYMPKSEGGLLGLALDPDFA NNHYMYIYHSYKTSDNKVANRVVRLIESNNTAKIDKVLITNLPGAVYHNGGRLKIGPDKK LYFSDGNYGNKDDTLTYLGGKIFRLNLDGTIPSDNPFGASSPIYSRGHRNPQGLAWQPGT NRLFESEHGESSKDEINFIQPGAHYGWPQYEGGNQNQPGITPPLLYASGTTWAPSGITFV TKGPWAGNLLVTNLKGKQIIRMTVKEQNGKPVIDSGSLNYLYVNKYGRIRDIVEAPDGSL YFVTSNNGDKNGDGSPDKLVRLAPNF >gi|333603525|gb|AFDH01000132.1| GENE 56 67321 - 68064 409 247 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_2951 NR:ns ## KEGG: GYMC10_2951 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 243 1 244 245 280 59.0 4e-74 MPFTFAHPVAVMPWWNKTTLPVSALIIGCMSPDFEYFVRFRAAGVWSHHGAGIVFFNLPM ILMLFLLFETVVRPALYDYLPGRFPYRWRREGAIPASFKGWFTVAVLGLAGTGTHLIWDQ FTHKGAWLVNHISFLGGTITAGSLEVPVYKAAQHGSTLIGLIGTAWWIHRHLRVPAEERS RVSSAPFWFTVLVLFVLIFAIAAVFVVDGKGLALLSQLVVPAISSLMLAVLLACLFFGKS VSRTGRS >gi|333603525|gb|AFDH01000132.1| GENE 57 68204 - 69088 709 294 aa, chain + ## HITS:1 COG:BS_yybG KEGG:ns NR:ns ## COG: BS_yybG COG1357 # Protein_GI_number: 16081117 # Func_class: S Function unknown # Function: Uncharacterized low-complexity proteins # Organism: Bacillus subtilis # 19 286 15 278 279 353 63.0 2e-97 MSQPDENPETVSYKNPQALLSDCEKCFGLCCVALPYAASADFAKDKDAGQPCPNLQQDFR CGIHTGLRRQGFKGCTVFDCFGAGQKVSQVTYAGEDWRRVPGSAKQMFEVFPVMRQLHEL LWYLSEALTLQPARSVHGELRTALDETERLTFLAPEALLELDVVAHRGKVNELLLRTSEL VRADAASRRKGGTQRRKIGRGADLMGAKLKGADLSGANLRGAYLIAADLRNADLRGADLI GADFRDADLGGADLRGSLFLTQAQLNAAKGDARTKIPAALVHPSHWSAAGHGTQ >gi|333603525|gb|AFDH01000132.1| GENE 58 69510 - 70085 272 191 aa, chain + ## HITS:1 COG:BS_sigW KEGG:ns NR:ns ## COG: BS_sigW COG1595 # Protein_GI_number: 16077241 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog # Organism: Bacillus subtilis # 10 180 9 187 187 83 30.0 2e-16 MQSEYMYQLLTKMKDGDRQAFHALYDATYQNVYRTVSFLVDHRQDREDVMNEIYMQMWTS LANYDTNRPFHFWLHGLVIRQVQRFRVKSWRRFRIFERIRAFSREESHWDEPAVLMDGTN RMISQAIQKLTDKQRTVIVLRFFHDYTLEEIATLLDIPLGTVKSRYHAGLQALRKNVWNL PPERMEKINDY >gi|333603525|gb|AFDH01000132.1| GENE 59 70207 - 71130 529 307 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_2896 NR:ns ## KEGG: GYMC10_2896 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 307 1 307 307 432 78.0 1e-120 MKKRLIGGIVAAAILIPTAAYAAPTLIEMLTRTPMTAEQVKVDEVGKAALEKLYHAFPET KSFEIIEASSVQGVQTSIILQEKGGTGKKITLHTNAVTGAIEHVIQENWEPKEKPLTALT DQEIKSKTDVLIDKLYGSIKQYEFAMEQMENPDQKTFMLNYSKKGSKTPFYQVFVQGNTI SASLIGGETAPSTIQVEGFFSRDGKPDYFADDFLNDAKLFSLLKISPTELKQELAKGKSV VEVASSKQVSKQQVIDVIAKTQVDGQIQGEKNGDVPPGNRSIEQMLKAIEPKVLQVIEHK NETPSKK >gi|333603525|gb|AFDH01000132.1| GENE 60 71336 - 72037 567 233 aa, chain - ## HITS:1 COG:no KEGG:Dtox_0451 NR:ns ## KEGG: Dtox_0451 # Name: not_defined # Def: methyltransferase type 11 # Organism: D.acetoxidans # Pathway: not_defined # 1 228 2 229 230 262 55.0 9e-69 MNQDVLYDVWWKHHEEGDQGMENDHIPHWKRVLSFIPEEDLSQCSVLDFGCNQGGFLRLL YEQRPFKEGIGTDLARRSVEVANSRKGDLPIQYVATAEPEQFEGRFDLAFSLAVLYLIPD LGEHARKMKKALKPGGVYYATFADYSENPSLPYIQERINSNASIPMQEHTLDHIAEMFFQ EGFRVGIRRMIPTWYLDLSPGKRWYQRVADHLQYAYEQAYVLRFEAPDDQESK >gi|333603525|gb|AFDH01000132.1| GENE 61 72070 - 72933 505 287 aa, chain - ## HITS:1 COG:PA4834 KEGG:ns NR:ns ## COG: PA4834 COG0697 # Protein_GI_number: 15600027 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Pseudomonas aeruginosa # 1 272 6 278 284 261 57.0 1e-69 MKNGILLSLLSSLVFSVMNALVKGISSTIPAAEIAFFRGLVGTLLILILMRYSGVAFSRK GIPMLAVRGLSGGLYMLAFFYTLSNIPLTDASLLAQLAPIFVAMLSVLILKEKLSRRGAV VFPVILAGALLLMKLHEYSSYSVYALVGLLSAFFSAAASISIRYLSRTHPSYEIVFYFVA TSMLVAIPFMWDSFVIPDARETVMLVIIGLVSLLGQLFLTKAFTHENAIIVQVVSYFGLF LNVLFGYLFWNEVPDLLTVAGGVLIVAGCMILCGGNRQSSPKTKLRI >gi|333603525|gb|AFDH01000132.1| GENE 62 72953 - 73606 476 217 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 1 213 59 264 329 187 43 1e-46 CGKSTVAKLLLALERPDAGDVIFDGVSLNALTGRALRLVRKDIQAVFQNPASSLNSRLPI WRSIVEPFDNFQSHDLSEFAGRGQSRRDTAAKLLEMVGLERTLGDRYPHELSGGQRQRVA IARAILLKPRLLICDEPTSSLDITVQSQILNLLKQLRQELGMSCLFISHDIAVIQRMCSR ILVMKEGRIMDRFPVDQLCSEERHPYTRQLVSAFMRE Prediction of potential genes in microbial genomes Time: Sun Jul 17 10:54:48 2011 Seq name: gi|333603475|gb|AFDH01000133.1| Paenibacillus sp. HGF7 contig00057, whole genome shotgun sequence Length of sequence - 48996 bp Number of predicted genes - 46, with homology - 41 Number of transcription units - 25, operones - 11 average op.length - 2.9 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 1 - 198 137 ## 2 1 Op 2 . + CDS 246 - 1445 1204 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase + Term 1611 - 1650 6.4 + Prom 1598 - 1657 6.5 3 2 Tu 1 . + CDS 1753 - 5946 3308 ## COG0587 DNA polymerase III, alpha subunit + Prom 6083 - 6142 1.8 4 3 Tu 1 . + CDS 6179 - 6574 523 ## COG1267 Phosphatidylglycerophosphatase A and related proteins + Prom 6840 - 6899 3.9 5 4 Op 1 . + CDS 7010 - 7198 193 ## GYMC10_4935 hypothetical protein 6 4 Op 2 10/0.000 + CDS 7283 - 8149 793 ## COG0777 Acetyl-CoA carboxylase beta subunit 7 4 Op 3 . + CDS 8139 - 9113 877 ## COG0825 Acetyl-CoA carboxylase alpha subunit 8 4 Op 4 . + CDS 9106 - 10866 1829 ## COG0469 Pyruvate kinase + Term 10885 - 10925 8.0 9 5 Op 1 . + CDS 10977 - 11408 457 ## COG0824 Predicted thioesterase 10 5 Op 2 . + CDS 11412 - 11807 367 ## COG3030 Protein affecting phage T7 exclusion by the F plasmid + Term 11822 - 11869 7.2 - Term 11805 - 11862 19.3 11 6 Op 1 . - CDS 11898 - 13016 1381 ## COG0628 Predicted permease - Prom 13085 - 13144 4.5 12 6 Op 2 . - CDS 13206 - 14249 803 ## COG1619 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF - Prom 14355 - 14414 4.3 + Prom 14220 - 14279 2.2 13 7 Tu 1 . + CDS 14477 - 16609 2096 ## COG0855 Polyphosphate kinase + Term 16765 - 16813 3.4 14 8 Tu 1 . - CDS 15362 - 18103 604 ## COG0248 Exopolyphosphatase - Prom 18184 - 18243 3.5 15 9 Tu 1 . - CDS 18255 - 18437 74 ## - Prom 18614 - 18673 3.2 + Prom 18271 - 18330 5.0 16 10 Tu 1 4/0.143 + CDS 18379 - 19491 1033 ## COG0372 Citrate synthase + Term 19553 - 19577 -1.0 17 11 Tu 1 2/0.286 + CDS 19640 - 20938 1363 ## COG0538 Isocitrate dehydrogenases + Term 20962 - 20989 1.5 18 12 Tu 1 . + CDS 21095 - 22039 1095 ## COG0039 Malate/lactate dehydrogenases + Term 22082 - 22108 1.0 19 13 Tu 1 . + CDS 22138 - 22563 518 ## GYMC10_4925 hypothetical protein + Term 22660 - 22710 -1.0 - Term 22534 - 22576 -0.9 20 14 Op 1 . - CDS 22625 - 23206 597 ## COG1896 Predicted hydrolases of HD superfamily 21 14 Op 2 . - CDS 23208 - 24389 1207 ## COG0726 Predicted xylanase/chitin deacetylase - Prom 24459 - 24518 5.6 + Prom 24400 - 24459 7.7 22 15 Tu 1 . + CDS 24542 - 26125 432 ## PROTEIN SUPPORTED gi|169634422|ref|YP_001708158.1| fumarate hydratase + Term 26210 - 26255 -0.9 + Prom 26295 - 26354 4.8 23 16 Op 1 40/0.000 + CDS 26445 - 28244 2023 ## COG0642 Signal transduction histidine kinase + Prom 28275 - 28334 7.3 24 16 Op 2 . + CDS 28360 - 29091 857 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain + Term 29098 - 29132 0.7 25 17 Tu 1 . - CDS 29583 - 30404 850 ## COG2207 AraC-type DNA-binding domain-containing proteins - Prom 30497 - 30556 5.3 + Prom 30481 - 30540 6.5 26 18 Tu 1 . + CDS 30659 - 31750 1099 ## COG0673 Predicted dehydrogenases and related proteins + Term 31783 - 31815 5.4 - Term 31822 - 31856 -0.6 27 19 Tu 1 . - CDS 31957 - 32019 154 ## - Prom 32099 - 32158 6.7 - Term 32101 - 32144 6.9 28 20 Op 1 . - CDS 32201 - 32335 163 ## 29 20 Op 2 31/0.000 - CDS 32343 - 33368 1346 ## COG1294 Cytochrome bd-type quinol oxidase, subunit 2 30 20 Op 3 . - CDS 33365 - 34720 1802 ## COG1271 Cytochrome bd-type quinol oxidase, subunit 1 31 20 Op 4 . - CDS 34799 - 34918 171 ## - Prom 34959 - 35018 6.0 - Term 35044 - 35103 11.1 32 21 Op 1 . - CDS 35113 - 35967 814 ## gi|304408124|ref|ZP_07389773.1| hypothetical protein PaecuDRAFT_4451 33 21 Op 2 40/0.000 - CDS 35996 - 37522 1232 ## COG0642 Signal transduction histidine kinase 34 21 Op 3 . - CDS 37519 - 38205 867 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain + Prom 38461 - 38520 5.0 35 22 Op 1 4/0.143 + CDS 38550 - 40931 2157 ## COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family 36 22 Op 2 7/0.000 + CDS 40928 - 41908 843 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 37 22 Op 3 1/0.571 + CDS 41901 - 42380 255 ## COG2246 Predicted membrane protein 38 22 Op 4 . + CDS 42377 - 43288 1079 ## COG1210 UDP-glucose pyrophosphorylase 39 22 Op 5 . + CDS 43384 - 44382 788 ## BMQ_3951 hypothetical protein + Prom 44409 - 44468 5.7 40 23 Op 1 . + CDS 44595 - 44951 125 ## CLL_A0317 putative erythrocyte membrane protein 1 41 23 Op 2 . + CDS 44975 - 45190 185 ## gi|261368614|ref|ZP_05981497.1| conserved hypothetical protein + Term 45367 - 45422 0.8 - Term 45200 - 45239 2.4 42 24 Op 1 2/0.286 - CDS 45259 - 45801 398 ## COG4675 Microcystin-dependent protein 43 24 Op 2 2/0.286 - CDS 45820 - 46320 410 ## COG4675 Microcystin-dependent protein 44 24 Op 3 1/0.571 - CDS 46351 - 46851 431 ## COG4675 Microcystin-dependent protein 45 24 Op 4 . - CDS 46848 - 47333 350 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - Prom 47392 - 47451 4.9 + Prom 47393 - 47452 8.6 46 25 Tu 1 . + CDS 47607 - 48996 1003 ## Gura_0797 hypothetical protein Predicted protein(s) >gi|333603475|gb|AFDH01000133.1| GENE 1 1 - 198 137 65 aa, chain + ## HITS:0 COG:no KEGG:no NR:no GSGLSARRITEWLAERYVYIRHFDSPLLEDKIRISIGTEEENLKLLTLLKELLNRPEDET APSED >gi|333603475|gb|AFDH01000133.1| GENE 2 246 - 1445 1204 399 aa, chain + ## HITS:1 COG:BS_yhdR KEGG:ns NR:ns ## COG: BS_yhdR COG0436 # Protein_GI_number: 16078022 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Bacillus subtilis # 7 398 4 392 393 478 58.0 1e-135 MTSPAKGAISEKLAGQLEKGSWIRKLFDEGKRLIDIYGADEVYDFSLGNPVVEPPEAFLK ALADTVNSGELGKHQYIPNQGLPSARQKVADYLNGRYGGSVKPEHIVMTVGAGGGLNVVL KSILNPGDEVILLTPYFVEYDYYADNHGGVAVHVPLADDFSVDTERVARAITERTRAIII NTPGNPTGTLLTQDNLNELGKVLAEGEKKHGGLIYMVYDDPYSQLVYDAVPPNPFAAYGR TILVSSFSKDLGIAGERLGYVAVDASADDAQLLAQAFVFSNRTLGFVNAPVMMQRVITRM DTLAVEQQEYRKRRDLMVGVLQEAGYEFTVPQGGFFIFPKAPIADDVEFCLKAVQEHRLL IVPGSGFGRGGHFRLSYSVPIKQIERSGKVFKALLDSYR >gi|333603475|gb|AFDH01000133.1| GENE 3 1753 - 5946 3308 1397 aa, chain + ## HITS:1 COG:CAC0516 KEGG:ns NR:ns ## COG: CAC0516 COG0587 # Protein_GI_number: 15893807 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit # Organism: Clostridium acetobutylicum # 4 819 11 825 1167 833 48.0 0 MNSFIHLHVHSEYSLLDGAARIQDLVETASQLGMKSLALTDHGVMYGAVPFYKACRAKGI KPILGCEAYFTEGTIRTKGTRQEQPIYHLILLAKNMQGYQNLMKLCSVGHLEGFHYKPRI DHDHLARYSEGLVCLSACLGGEVSQHLLHDRKEQAKAAAERYRSIFGEDFYLEIQDHGSI EQKKVMQGMIELSRETGIPLVATNDVHYVREQDHVVQDVLLCIGTGKTVDDPQRLKFETS QLYLKSEDDMRKLFAHVPEALDNTLLVAEKCELVLNFDQSILPKFKPIPEGLGAGEYLRE LCTEGLARRYENQPGWNDLQGEYRQTLETRLSYELGVIESMGFSDYFLIVWDFIRFSHEH GIMTGPGRGSSAGSLVAYVLRITDVDPIRYKLLFERFLNPERITMPDIDIDFNDERRDEV IDYVVAKYGQEHVAQIITFGTMAAKAAVRDVGRVLNVPYNEVDRAAKMIPGQLGMTLEAA LKVNPDLKDLAEKQPKTAELLNMAKRVEGMPRHASTHAAGVVISREPLTHYVPLQEGTGQ TPLTQYSMEHLEAIGLLKMDFLGLRTLSIIERTLKSIEEQEGIKLDLAKLDMDNDPLTYE LLEKGETTGIFQMESPGVRKVLRDLKPSGFEDIVSVIALYRPGPMEFIPRYIECKHGLTQ PQIPHEALVPILKDTYGIIVYQEQIMQIASAMAGFSLGEADLLRRAVSKKKREVLDEQRA HFVEGSVGLGYKEEEANGVYDMIVRFADYGFPRAHATAYGVLAFQTAYLKAHYPRHFMAS MLTAVVGNHRKTAEYVDECRRMKLEVLPPDVNESGVNFTPVAPKASLPAAEGAGEGHGGT DNGDKGLEGAAVTAGSGHSKGEDGGSGDSGESAKSDAGASPAGKGAIRFGLAAIKNVGTN AIEAILKERREKPYESLLDFCRRVDLRVCNKRVIESLIQGGALDGFPGHRAQFVAMLDDT VEAAVKWRKERDDLQLHLFGFVEEPNWEVEIPEVARLSRTQQLEYERELLGLYISGHPLD DHQELLQELEADPLHYLQDYADNSEVIVAGMVVSSKTIVTKKGQPMAFMDLEDRIARVEV VLFPEAWKKHAPLVQKGSVVLVKAKLQLQDEDPPKLLAEAVAAPDDPAVRRWQRRPLRPG GQSASGGSAPRGAGAAPQGGRAGERGAAAGNARSGQPGGSPGAGSGANVSPGAGTRPGGE GGAQAGVSGSARPADGSSRADAASGRAQAPGRAAGSARSSSVVRETRRGAAGYGAGEPGP AAGEARSGQDGGPGPGGEATAHAGSSGRAADRGSAAPQRSSAAKSADEPRRPAAQGTPAG ASRQRVYVKIAAHLEEPHNLVKLQELLQLHAGPLEVALFYERTQRLLALSGQYRVKPSPE LFRSIEQLMGKDCVKVK >gi|333603475|gb|AFDH01000133.1| GENE 4 6179 - 6574 523 131 aa, chain + ## HITS:1 COG:BS_yutG KEGG:ns NR:ns ## COG: BS_yutG COG1267 # Protein_GI_number: 16080281 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylglycerophosphatase A and related proteins # Organism: Bacillus subtilis # 1 108 55 163 166 127 57.0 5e-30 MLAKREVQYTLMTGIALDELAERKLLPEPLQSILEADEPLYGVDETLALGIVHVYGMIGL TSFGYLDKQKIGVIRDLNDHQREIHVFLDDLVAGLAAAASARIAHQNKPVSTYFEELCET GETGVDTKEPA >gi|333603475|gb|AFDH01000133.1| GENE 5 7010 - 7198 193 62 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_4935 NR:ns ## KEGG: GYMC10_4935 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 61 1 61 62 83 75.0 3e-15 MWTVIYIAPTAKIAERIKQRLSEEGFLVQIRAISMTKNQFEIVVPEGEVEEVQEVLNTIL HR >gi|333603475|gb|AFDH01000133.1| GENE 6 7283 - 8149 793 288 aa, chain + ## HITS:1 COG:BH3166 KEGG:ns NR:ns ## COG: BH3166 COG0777 # Protein_GI_number: 15615728 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA carboxylase beta subunit # Organism: Bacillus halodurans # 1 278 1 279 282 354 61.0 1e-97 MLKDLFQKRKYATIPSEKAKRDIPEGLMNKCPRCGTIQYSKELEKNLKVCTSCNYHYKLN AMERMTMTLDEGRLFEYDENMISEDPLGFPDYENKITKAKDKTGLKDAIVTGEGTIGGYP VVFGAMSFDFMGGSLGSVVGEKLTRAIESAIQKKYPLILFSTSGGARMQESILSLMQMAK TSAAIQKLDSEGGLFVSVITDPTFGGVSASFAMLGDIIIAEPAASFGFTGRRVIEQTIKQ KLPDNFQTAEFNLLRGQVDKVVARKDMRTTLIKLLDMHVMKGDANYGG >gi|333603475|gb|AFDH01000133.1| GENE 7 8139 - 9113 877 324 aa, chain + ## HITS:1 COG:lin1607 KEGG:ns NR:ns ## COG: lin1607 COG0825 # Protein_GI_number: 16800675 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA carboxylase alpha subunit # Organism: Listeria innocua # 1 315 1 315 318 388 62.0 1e-108 MAGELSFEQPLTELRSKIDELKRFGEEKKIDFTDEIRRLEERYAELQQELYSTMSASEKM QLARHPQRPTTIDYIERIFTDFVELHGDRLYGDDLAIIGGVAKLDGLPVTVVGHQKGKDT KDNIARNFGCPHPEGFRKALRLMKQADKFGRPVITFIDTKGAFPGNAAEERGQGEAIARN LLVMAGLRVPVVCVVIGEGGSGGALALGVGNRVLMLENAIYSVISPEGAASILYNDASKS LHAAEAMKITAKDIAELGVIDSIVSEPQGGAHRDLELQSANIKAAVLEHMQPLLAMSEEE LKEDRYLKFRQIGRYTFTQEGNHA >gi|333603475|gb|AFDH01000133.1| GENE 8 9106 - 10866 1829 586 aa, chain + ## HITS:1 COG:BH3163_1 KEGG:ns NR:ns ## COG: BH3163_1 COG0469 # Protein_GI_number: 15615725 # Func_class: G Carbohydrate transport and metabolism # Function: Pyruvate kinase # Organism: Bacillus halodurans # 1 475 1 473 473 592 67.0 1e-169 MRKTKIVCTIGPASESKENLKKLVTAGMNVMRLNFSHGDFEEHGGRINNLRAACEELGGR NVSILLDTKGPEIRLGKLKEEPIELAAGEMITLTTEEILGDRERVSVTYEGLAEDVKPGD TILIDDGLIGLTVEAVQGNDIKCRIVNSGPIKSKKGVNVPGVSISLPGITEKDANDIVFG IEQGIDFIAASFVRKASDVLEIRELLERHNASHIQIISKIENQEGVDNLDEILEVSDGLM VARGDLGVEIPPEDVPVVQKQMIKKCNLVGKPVITATMMLDSMQRNPRPTRAEASDVANA VFDGSDAIMLSGETAAGKYPVEAVETMSRIAQRAEAALEYREIFLRQAHALQTTVTESIS QSVANAALELDAKAIVTATESGYTARMVSKYRPKAPIVAVTRNPQVMRRLNLVWGVQPVL LHGDAQTTDELFEQAVDGSIREGYVDLGDIVVITAGVPIGSSGTTNLMKVHQVGEMIAKG TGIGTQHAKGIVVTAETAEEAISKMKDGAILVTNTTDKEYMPAIERAAGLITDVGGITSH AAVVALSLGIPVIVGVDRALDLIKDDMEITLFPEVGIVYSGRARVL >gi|333603475|gb|AFDH01000133.1| GENE 9 10977 - 11408 457 143 aa, chain + ## HITS:1 COG:DR0902 KEGG:ns NR:ns ## COG: DR0902 COG0824 # Protein_GI_number: 15805927 # Func_class: R General function prediction only # Function: Predicted thioesterase # Organism: Deinococcus radiodurans # 16 135 13 137 142 96 44.0 1e-20 MPNEATNEREWFPYGVRVRYQETDQMGVVYHANYLTWLEIARTEYIRDRGFPYKRMEELG LLLPVVGAELKYVRPARYDDELTILTRVTSYTTVKLEFEYEVRRGEELLVTGITRHAWVN LSWKPVRIDKEVPELYEWLQRGG >gi|333603475|gb|AFDH01000133.1| GENE 10 11412 - 11807 367 131 aa, chain + ## HITS:1 COG:BH3162 KEGG:ns NR:ns ## COG: BH3162 COG3030 # Protein_GI_number: 15615724 # Func_class: R General function prediction only # Function: Protein affecting phage T7 exclusion by the F plasmid # Organism: Bacillus halodurans # 1 131 1 131 131 95 45.0 2e-20 MLRIALAVFIIVPVLEIACIIGMAHLIGGWMTFGLILLTGLLGALIVRKEASRFLPYARN QLSMGQNPSDSVLDSVCVFVGGLLLIVPGFLTDLAGLLLVLPFTRSLFKMGLLVLLQKLM RNGRFMFINRR >gi|333603475|gb|AFDH01000133.1| GENE 11 11898 - 13016 1381 372 aa, chain - ## HITS:1 COG:BH0463 KEGG:ns NR:ns ## COG: BH0463 COG0628 # Protein_GI_number: 15613026 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Bacillus halodurans # 1 365 1 367 372 213 41.0 4e-55 MFNPYLLHKIFRGALVLLCLVAGWLLLRYVSPLIYPFIIGWLLAYVLNPIVNMLQRKAKM PRWLSATLVILLLIAITVTAMTLLVTKVIVELGTLAENLQSMINGWKDQATGFLNSAWFQ GIVGQLNDFMRANNLDLSSNLSSVTGTIADFSSNALKYIVNSLIHIIQSLPNIATVSIIV LMATFFISKDWYRLVMRYTVLVPETVRKATRLISSDLQKALFGFMRAQLILISLTTVAVI IGLVILRVDFAVTIGLLIGLCDLMPYLGTGAVLVPWIIYCFFKGNLFLGIGLSVLYGLIV IVRQIMEPKVLASSVGLDPLAALIALFVGLKLFGVVGLILGPVLMVVLTAVYKANVFHDI ARYIKNGPAANT >gi|333603475|gb|AFDH01000133.1| GENE 12 13206 - 14249 803 347 aa, chain - ## HITS:1 COG:BH0726 KEGG:ns NR:ns ## COG: BH0726 COG1619 # Protein_GI_number: 15613289 # Func_class: V Defense mechanisms # Function: Uncharacterized proteins, homologs of microcin C7 resistance protein MccF # Organism: Bacillus halodurans # 5 346 2 336 338 305 43.0 1e-82 MKKRIVYPQPLKKGGRIAVTAPSSGVEEPLHHLLKASKEALENSGYRILEGQTIRTNDKC VSTGKEERARELQSFLLDDTVAAVIPPWGGEFLMDILPLLDWNLLKANRKPKWVLGYSDI STFMFAYTLLTGHATAHGTNYIDMSSGQLDGTSARWEAVLSTAEGETVEQASSEKFQSAW DFSKPGFQLDTPTSWKILGSEDDPAYEISLEGRLLGGCMDTLSILAGTPYAPVRPFVRSY CREEGVLWYLESCEMNAADIYRHLWQMKQCGWFEHAKGILIGRPAGYGPVKNFALQDALH HVFDGLGIPVLYDLDIGHVPPQLTLVNGAFAKVKASGGAGNVKMSFV >gi|333603475|gb|AFDH01000133.1| GENE 13 14477 - 16609 2096 710 aa, chain + ## HITS:1 COG:BH1392 KEGG:ns NR:ns ## COG: BH1392 COG0855 # Protein_GI_number: 15613955 # Func_class: P Inorganic ion transport and metabolism # Function: Polyphosphate kinase # Organism: Bacillus halodurans # 27 693 20 690 705 636 50.0 0 MQISGSWGFVENNQKPEGVKSNDCYKYVNRDLSWIEFNRRVLEEAQDPTAPLLERAKFLS IVSSNLDEFMSVRVAGILDQMKAGYHKKDFTGYTPSGLLKRLLKRANRMVADQYKAFRDL TRQLAREGIFFPSYDELNSTQQKEMDTYFHEIVFPVLTPMAVDQSRPFPLVHTQSNYLAV VLESCVPTDLRTYFAIVRVPLNLGRLVRVPVRTNSKKLEFIRMEELIKHHIESLFSGYKP IAVNGFRLTRNADLTLNEEGAEDLLEEIEKELKQRRWGAPVRLEVEKGIHPYALELLRDE FEIGEGCFEIDGPIDLTYLIKLPQLVGGRAHLYYPALEQVYAEEFEHTDDFFEVIRERDV LLYHPYECFDTVADFILQASDDPFVLAIKMTLYRVSGNSPLIGALARAAESGKQVTVVVE LKARFDEERNIAWARKLEKSGCHVVYGLVGLKTHAKITLVVRQEQESLRRYVHVGTGNYN DNTAKLYTDVGLFTSHQVMGEDASALFNEMTGYSSPHDWQAFIVAPADMKTRLIELIERE GRHALAGKPARIVAKMNSLSNQEVVDALYEASQAGVKIDLIVRGVCVLRPGVADLSENIT VRSIVDRFLEHSRLYWFENGGSPDVYLSSADWMTRNLTRRIELMCPVRDEELQQSVINLL ELCLRDNVKARFLQPGGNYIRAAENGPKVRSQFDAMTINRWKVRKREYTR >gi|333603475|gb|AFDH01000133.1| GENE 14 15362 - 18103 604 913 aa, chain - ## HITS:1 COG:BH1393 KEGG:ns NR:ns ## COG: BH1393 COG0248 # Protein_GI_number: 15613956 # Func_class: F Nucleotide transport and metabolism; P Inorganic ion transport and metabolism # Function: Exopolyphosphatase # Organism: Bacillus halodurans # 1 414 1 417 518 253 34.0 1e-66 MNSSRYAIIDIGSNSVRLVIYEVTPPGAYRILHETKETARLSERIGEDGAMTHDGILSVV PLLRRFKRICGAYSVDSVKAAATAAIRNAANAEDIARELAERSGIVIDILSGEEEARLGF QGVVSTLDVRDGFIVDIGGGSTEITLFLDRKRVNSVSFPFGAVTAAREYTPGGIVRPERI EALKALVRDTIDLHPWIREHAELPLISLGGAGRALAKLNQKRVDYPLPVMHNYELEENDL QNYMDLLPSLPVEKRKKLDGLSKGRADIIVAGVVLLHSVYRQTAASRIIVSSAGLRDGLF YETAMPDRLPITDVLEFSVENMLKLHTPLPHDHLRRAAAHAAALYDVLADSAPELQPRHR SLLHAAALLQRIGYTVSSYQHWRHTFHLITESRIDGLTHREIVLCALIATFKNKTGPVSR RFLTQACWTGPMKTSRPSSALFSAWPPPWITARTGTSPNWTCVPFRASCTCICSAKSRTR RKSERSKKPRRRPENTGPLPRIFTLPHFPPINSHRIELASHLRPVFSRPDIIPSGLQETG FYIIPQTQFKQIDHTLLQLLIPDGAHQFNPPRQVAGHPVGARQVDVGTASVLEPVQSRML QKTVDDTPHGDVFAQIRNAGTKDTDSSHDEVDLHARLRSLVQRVHHFLVRERVHLGHDTG RLARKRVASFSFDKLDKPRLHVRGGDDKRLPVMRRRIAGHFVEQGRSVFAHHLVARKQTH IRVQLGRVVVVIAGSDMDVSPEAFLLLPDDQRDFGMGLESDQTIHDVAPRLFQLPGPGDI PLLVKTGFKLDDDRHLLARFGRSGQRPDERRIAADAIQRHFDGKHKGIVGSLQNKIRHRI EALVRMIKKHIPFPDHLEKIVRMLKLFGVNLFQGGVVQMRAPADQLRELDQIGQIDRAVD FETAFSDFKLVPQ >gi|333603475|gb|AFDH01000133.1| GENE 15 18255 - 18437 74 60 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MELIDDVVATIPSKPLVAVMETSPYFTGLTKTAVAFLLIIKDFDHYVKQKPIKLHYQYNK >gi|333603475|gb|AFDH01000133.1| GENE 16 18379 - 19491 1033 370 aa, chain + ## HITS:1 COG:BH3160 KEGG:ns NR:ns ## COG: BH3160 COG0372 # Protein_GI_number: 15615722 # Func_class: C Energy production and conversion # Function: Citrate synthase # Organism: Bacillus halodurans # 1 370 1 371 372 509 69.0 1e-144 MTATKGLEGIVATTSSISSIVDGVLTYRGLDIDDLAENASFEEVIYLLWFGKLPNQAELD QLRSDLNASSSIPDQVLEQIKLYPSDTNAMAALRTAVSALALYDKEANEMSRESNVRKAI KLQAQIPTIIAAFARIRGGKEPLASKGYPSLAANFLYMLTGEEPDETAITALDKALVLHA DHELNASTFAARVTVATLTDIYSGITSAIGTLKGPLHGGANEAVMAMLEEIGEVENVVPY INKKLENKEKIMGFGHRVYKNGDPRAKHLQEMSQQLTESTGLGKWYQMSIQIDELITSLK GLKPNVDFYSASVYTSLKIPRDLFTPIFAISRASGWTAHILEQYDNNRLIRPRAEYTGPT NQKYIPIEER >gi|333603475|gb|AFDH01000133.1| GENE 17 19640 - 20938 1363 432 aa, chain + ## HITS:1 COG:BS_citC KEGG:ns NR:ns ## COG: BS_citC COG0538 # Protein_GI_number: 16079965 # Func_class: C Energy production and conversion # Function: Isocitrate dehydrogenases # Organism: Bacillus subtilis # 12 431 3 422 423 688 79.0 0 MPKFENYALPTEGQAITIENGKLNVPNNPIIPFIEGDGTGPDIWAASQRVLDAAVEKAYK GEKKIAWYEVFAGEKAFNTYNSWLPNDTLEAIREYIVAIKGPLTTPVGGGIRSLNVALRQ ELDLYTCLRPVRYFNGVPSPVKHPELVDMVIFRENTEDIYAGIEYQEGSAEVKKVIEFLQ NEMGANKIRFPETSGIGIKPVSKEGSERLIRAAIEYAIKHGRKSVTLVHKGNIMKFTEGA FKNWGYALAEKEFGDKVFTWTEYDRIKEEKGTDAANQAQKEAEEAGKIVVKDAIADIALQ QVLTRPTDFEVIATLNLNGDYLSDALAAQVGGIGIAPGANINYMTGHAIFEATHGTAPKY AGLDVVNPGSVILSGVMMLEHLGWQEAANLIYKGIESAIDAKTVTYDFARLMDGATKIKC SEFGDEIIKHMG >gi|333603475|gb|AFDH01000133.1| GENE 18 21095 - 22039 1095 314 aa, chain + ## HITS:1 COG:BS_citH KEGG:ns NR:ns ## COG: BS_citH COG0039 # Protein_GI_number: 16079964 # Func_class: C Energy production and conversion # Function: Malate/lactate dehydrogenases # Organism: Bacillus subtilis # 1 312 1 312 312 444 71.0 1e-124 MAIRRNKITVVGAGFTGATTALMLAQKELGDVVLVDIPQLENPTKGKALDMMEASPVQGF DSNIVGTSSYEDAAGSDIVIITAGIARKPGMSRDDLVNTNAGIVRSVCENVKTHCPDSIV IILSNPVDAMTYVAYEALGFEKNRVIGQSGVLDTARYCTFIAQELNVSVEDVRGFVLGGH GDDMVPLVRYSNVGGIPIEKLIPSERIEAIVQRTRTGGGEIVNLLGNGSAYYAPAASLVQ MAEAILKDKKRIIPAIALLQGEYGYENLFMGVPTLLGAGGIEKVFELELTGEEKTALDKS ADSVRNVIKVVTGA >gi|333603475|gb|AFDH01000133.1| GENE 19 22138 - 22563 518 141 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_4925 NR:ns ## KEGG: GYMC10_4925 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 12 112 6 106 141 69 40.0 5e-11 MGRIVLFLQTLLFLHVTGAITLGFYLLLPLLLHSSLKQTEDARLGQLRLIRHLNRIGQYI LLAQLATGGYLLSLGTYSTAWMTAVITLFIGVGAAGGMLGVALRRVINGRAEAMRQAFWY SAAAELAFVLLLVLKKFPQIL >gi|333603475|gb|AFDH01000133.1| GENE 20 22625 - 23206 597 193 aa, chain - ## HITS:1 COG:VC1978 KEGG:ns NR:ns ## COG: VC1978 COG1896 # Protein_GI_number: 15641980 # Func_class: R General function prediction only # Function: Predicted hydrolases of HD superfamily # Organism: Vibrio cholerae # 2 192 42 233 233 184 46.0 7e-47 MDHHFFAYLYRMRYIERWSLMRSTVRENVAEHSFHVSLLTHVLCTIGNEVFGRSWPTDRV VSMALFHDATEVITGDIPTPVKHHNPHILRNFRELEQLAADKLVQMIPDELRHAYEPLIL GPSDPELARIVKAADLLDAYLKCTAELSAGNREFGTAKKQIEQSITELNMPEVEYFLTRL APSLEKTLDELSD >gi|333603475|gb|AFDH01000133.1| GENE 21 23208 - 24389 1207 393 aa, chain - ## HITS:1 COG:SA2461 KEGG:ns NR:ns ## COG: SA2461 COG0726 # Protein_GI_number: 15928254 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted xylanase/chitin deacetylase # Organism: Staphylococcus aureus N315 # 39 259 62 269 290 107 27.0 4e-23 MYKRLLSALLLAVFGLSALLIPTGADRYKLWYRDQVAVLMYHHIHDQDTSSSTITSKLFR DQMNYLLAKGYHFITLQEFKQYLAGASVPDNAVLVTFDDGYESVYSHAYPVLKELKIPAV NFIITETLADPKATMIPSMSKEELTRMSHETNFIENQCHTNASHRKLDSGEAALVGRETV NGVQETDEQYRSRIYNDAAACASNLSPLQELPVDTVAYPYGIIADEGAEMYSKAGFRYGF TIIPQMATRDADRMHIPRINAGSPWITPERLHTTLKRRAVAQPQTSGSVLLSDAVDRLGG TVTDDGQSVTIRSDDRVFSGSVGSRRFKTAASVVELSEPVRREHGELVISLSDLQRLLGR EVTYNRSTGQIYWRQEPRILTSQDSKSHQGGTP >gi|333603475|gb|AFDH01000133.1| GENE 22 24542 - 26125 432 527 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169634422|ref|YP_001708158.1| fumarate hydratase [Acinetobacter baumannii SDF] # 5 512 11 491 508 171 28 1e-41 MQHFLQSVYDLIVETSTNLPADVRRAIRNAQSLEDKGTRAALSLSTIAQNIEMAETNVSP ICQDTGMPTFIIHCPVGADQITMKRQIREAVAQATKDSKLRTNSVDSLTGANTGDNLGPG TPVIHFEQWERDDIEVKLILKGGGCENKNIQYSLPAEIPGLGKAGRDLDGIRKCVMHSVY QAQGQGCSAGVIGVGIGGDRTTGYELAKHQLFRSLDDVNPNEDLRKLEDYVMENANKLGI GTMGFGGQVTLLGCKAGVMNRLPASFFVSIAYNCWAYRRQGVVLNAQTGEIQDWVYERGS DQPMNEAAQPVAAAEASQPEAVAAAPDADESDERREIVLQTPISEEQIRQLKVGDVVIIN GMMHTGRDALHKYLMDHDSPVDLNGAAIYHCGPVMSQDQAGNWKVRAAGPTTSIREEPYQ GDIIKKFGIRAVIGKGGMGPKTLAALKEHGGVYLNAIGGAAQYYARCFKKVEGVDFMEFG IPEAMWHLQTEGFAAIVTMDSHGNSLHADVEKNSLQKLEQFKEPVFA >gi|333603475|gb|AFDH01000133.1| GENE 23 26445 - 28244 2023 599 aa, chain + ## HITS:1 COG:lin2643 KEGG:ns NR:ns ## COG: lin2643 COG0642 # Protein_GI_number: 16801705 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 1 595 1 588 591 410 40.0 1e-114 MLKFRARLTLILMLMIGVSMLIAGIFMAKLLEDSHIKELESNLVRELRVIEMTGDWNKAG DLAFLVPYYTSQTKRLKEFTDARVTYIREDGKVLGDSDENPEELDNHAGRSEIQQANREG VGYAIRYSDTLKRNMLYAAIPVQTAGEEKTGYLRLAISLEQVENTIRHLWLFLLIGLGIL FLIAGATSYRIAKGLTRPIENITNVAKQITNRNYKARVETKSLDEVGQLGQAINRMADSL HMQMNRILENEGRLKGVLENMGSGILMVDRDQRIVLVNRSAEDILGFSSNELYGKKYDEA KQQFELTRLIQECIETNEHIREEIIFYYPSERILEINLSPISQADGEWSGALVVLHDITA MRRLERMRSEFVANVSHELKTPIAAVKGFSETLLAGALDDKETARSFLQIIFDESERLNR LVGDILELSKIESKRIPLQLSPTHLQSIIQKSLHMMEAEADKKKIALSMNVDEALFLEAD EDRLRQILINLMANGINYTPEGGRVSVAAELAGSGTEGEDERIRISIKDTGIGIPKKDLP RIFERFYRVDKARSRSSGGTGLGLSIVKHLVEMHHGTIRVESEVGYGTEFIIELPVIHP >gi|333603475|gb|AFDH01000133.1| GENE 24 28360 - 29091 857 243 aa, chain + ## HITS:1 COG:BH3157 KEGG:ns NR:ns ## COG: BH3157 COG0745 # Protein_GI_number: 15615719 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Bacillus halodurans # 5 235 1 232 239 218 46.0 1e-56 MGDTMSQKILVIEDEPTLARLLSYNLTQEGYETKVVDHGGDGLQAAMQQPYDLIILDIML PGLNGFEVLSKLRQKGNATPVVILTARNAEEEVVQGLKHGADDYITKPFGVAELLARVAA VLRRTQADEPGGEGKKSTDKVIAVGDLQIFPEKYEVYLGEESIPLRPKEFEVLLYLVQRP GVVITRDDLMNIVWGFDYIGGQRTVDVHVSSLRKKLEMNQQSVQIESIRGVGYKLVAHQG RKV >gi|333603475|gb|AFDH01000133.1| GENE 25 29583 - 30404 850 273 aa, chain - ## HITS:1 COG:lin2267 KEGG:ns NR:ns ## COG: lin2267 COG2207 # Protein_GI_number: 16801331 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Listeria innocua # 17 268 30 288 292 87 24.0 2e-17 MRVFQARRDDERMSPWHYHKEVEMLAIVEGELDVYLENERVSLKAGDVVLIGSSELHRDR SSADTTLVYYVFQFDLEHYFDESGIAYLRYFSETQSALSKLNYIFRENPAIRDEVFACIR NIYTEYAGKKVGYEIAISILVKQIVLSLLRSDEKRLLDYGNSADLIRLKPVFEYIDRNID GKVYVDEASKAANISYYYFVKYFKKVLGISFLDYVNFKKIKKAEKILLTQDISVAQVGEQ IGMPNMAHFYKTFKKINHCSPHEFRKKMLEWNR >gi|333603475|gb|AFDH01000133.1| GENE 26 30659 - 31750 1099 363 aa, chain + ## HITS:1 COG:lin2266 KEGG:ns NR:ns ## COG: lin2266 COG0673 # Protein_GI_number: 16801330 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Listeria innocua # 6 360 4 358 358 539 70.0 1e-153 MSQKYRIGIIGCGGIANGKHLPSLAKLPNVELVAFCDIVIERAEKAKEQYGSGDACVYQD YRELLKDSSLDIVHVCTPNDSHADITIDALEAGKHVMCEKPMAKTSVDARRMVDAAKRTG KKLTIGYNNRFRSDSQYLKKLCEDGELGEVYFAKAHAIRRRAVPTWGVFLDEEKQGGGPL IDIGTHALDLTLWMMDNYKPKVVLGTSYHKLSHRANAANAWGPWDPAKFTVEDSAFGMIT MENGATIMLESSWALNTLEVDEAKCTLSGTEGGADMKDGLRINGEKNSRLYTQNIELSSG GVAFYEGASENAPDLEMRMWIDAIENDKDPVVTPEQALVVSEILEAIYESAKTGKAVYLN EEK >gi|333603475|gb|AFDH01000133.1| GENE 27 31957 - 32019 154 20 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MYYEEDREPFEDDTADEKEE >gi|333603475|gb|AFDH01000133.1| GENE 28 32201 - 32335 163 44 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MEHFMIMYAPPIVVAVSLLFLFLWTPRAKDVTDEPEGDRPQRMR >gi|333603475|gb|AFDH01000133.1| GENE 29 32343 - 33368 1346 341 aa, chain - ## HITS:1 COG:BH3974 KEGG:ns NR:ns ## COG: BH3974 COG1294 # Protein_GI_number: 15616536 # Func_class: C Energy production and conversion # Function: Cytochrome bd-type quinol oxidase, subunit 2 # Organism: Bacillus halodurans # 1 338 1 338 338 291 54.0 1e-78 MNLELLGITVLWVFLFGYLIVASIDFGAGFFSYYSVVTGSKNITHRIIERYLSPVWEVTN VFLVFFYIGLVGFFPETARYYGTALLVPGSLALILLALRGSYYAFSTYGSKDNQWYMLIY GATGLLIPAALSTVLAISEGGLIVETAGQITLDWSALLGSVYTWSVVLIAIVSVLYISAM FLAYYAHKAKDKAAFEIVRGYALFWSVPTILASVLVFFAISRHNPEHFTKMLDLAWMFVI SFLCFLIAVYAVWKKRHLGLGFTFVLLQFAFAFFGYGASHLPYILYPYITIHENFTNPAM GTALIIAFIAGLLILIPSLVLLMRLFLFDASYVQGNRDKKG >gi|333603475|gb|AFDH01000133.1| GENE 30 33365 - 34720 1802 451 aa, chain - ## HITS:1 COG:BH3975 KEGG:ns NR:ns ## COG: BH3975 COG1271 # Protein_GI_number: 15616537 # Func_class: C Energy production and conversion # Function: Cytochrome bd-type quinol oxidase, subunit 1 # Organism: Bacillus halodurans # 1 447 1 446 448 483 60.0 1e-136 MFHYDPVLYSRILTEVTLAFHIIFATIGVGVPVMIALAEWTGIRKNDRYYTLLARRWARG FVITVAIGVVTGTAIGLQLSLLWPSFMEIAGQAIALPLFMETFAFFVEAIFLGIYLYTWD RFKPKRHLMLLIPVAIGSSASAFFITTVNAFMNTPQGFTLENGKITNVDPIAAMFNPATP TKVSHVLASAYMTCAFILAAIAAFSLLRRKGDRLYAKKALKLTLSAGLVFALATAAIGDL SGKFLAAYQPEKLAAAEWHFETQTKAPLVFGGILTEDKEIKYGLKIPYALSILAGSNPGF EVKGLDQIPDELEPPLYVHYFFDGMVTIGMFTIVIAALYLWLSRSKRASKPAPRWLLRVI VACGPLSMLGIWLGWFYAEVGRQPWILRGYMKVAEAATTSAHVDKMLLLFCLLYLVLGLT AIKVLSKLFKNNDVADELIAFGVFEKRGPLE >gi|333603475|gb|AFDH01000133.1| GENE 31 34799 - 34918 171 39 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MYRGGESMKPFKRQEKRLMILMFVVAAVMLLSFLRRLFA >gi|333603475|gb|AFDH01000133.1| GENE 32 35113 - 35967 814 284 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|304408124|ref|ZP_07389773.1| ## NR: gi|304408124|ref|ZP_07389773.1| hypothetical protein PaecuDRAFT_4451 [Paenibacillus curdlanolyticus YK9] hypothetical protein PaecuDRAFT_4451 [Paenibacillus curdlanolyticus YK9] # 1 281 1 270 275 263 56.0 2e-68 MVYAFTIQPGIYHAFEDEAEQIEQCKEWGLLSGKATKTKAFFYKGNGLNVPCTIVGYTDR MTAVIEFDNKQQHCIHPSYLKEMQAANYGQRQWSSSENATEADASEGNDAAGNAEPAGEV PADSAAETTAAAIPQKQAAAEPALTSQTEAEPGQAAVSADRDKPDAESEAVDAPKAKAKK EKAPKLQLPEEKVKMTAKVQDFTTVPNHFSDNDDEVIIYENVTIVEPETDIGTAWSSHSA TLKKLELEVGDTITFEAKIVAKKLTRYPVPYKINNPAKIQKVQE >gi|333603475|gb|AFDH01000133.1| GENE 33 35996 - 37522 1232 508 aa, chain - ## HITS:1 COG:CAC2760 KEGG:ns NR:ns ## COG: CAC2760 COG0642 # Protein_GI_number: 15896016 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Clostridium acetobutylicum # 126 498 111 482 482 263 38.0 8e-70 MKQGRPLTRAARLLAPRSLQFQLLSRSLYILAALLVLVGALQSIWMKNFLYRNRAETMSI QLNGLPRDLLDHSSLLPERRGKNEEVQPGSERPRGPVLFLPDTSLAYIAPDGTFTDLTKE SGMISPQLPAEEYTAVREEMAPRRPVSYKIVQDAVGTEQLVVFRPAERSGSFGGIIQMGT GTAQLQAVVLQQLWIYGALIVLALAGGLALNIPVLRRTLQPLNKMVEAVEQTDAGNLNER FPETQGQLEIDSLAKSFNGMLQRLETSFIAERDAKEQMRRFIADASHELRTPLTSIHGFL EVLLRGAADNPKQLYAALTSMHGESTRIKKLVEDLLTLAKLDRAPQLQLSDTRLDRLLLE MEPHLRMLAGTRTVHIDLTAGISGTFDPDKMKQVILNLFHNAVQHTDPETGVITVILSAD RDGIALKVKDNGPGIPEEHAAHVFERFYRSDSSRTRKHGGAGLGLSITKSIVEAHGGTIS VRSREGAGSTFVLTFPEIGEINGGKMLK >gi|333603475|gb|AFDH01000133.1| GENE 34 37519 - 38205 867 228 aa, chain - ## HITS:1 COG:CAC2759 KEGG:ns NR:ns ## COG: CAC2759 COG0745 # Protein_GI_number: 15896015 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Clostridium acetobutylicum # 6 225 8 226 228 249 58.0 3e-66 MKNGKDIRILLVDDEPHILQFLEFGLVNEGFEIKTAPDGMSAINLVREFQPHVVVLDVMM PGMDGFEVCRLLKKNGSNIAVIMLTAKDEVEDRVKGLTIGADDYLVKPFSFEELLARIEA RLRNQFPGVFREIAIGPFRIDDPRKEIIFGERSLELSPTEYELLKFLVVNHGIVLSKTKI LDKVWGYDFGGEENIVEVYIRSLRDKLGDKEHRLIRTLRGAGYRLDWS >gi|333603475|gb|AFDH01000133.1| GENE 35 38550 - 40931 2157 793 aa, chain + ## HITS:1 COG:BS_ykcB KEGG:ns NR:ns ## COG: BS_ykcB COG1807 # Protein_GI_number: 16078353 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family # Organism: Bacillus subtilis # 22 566 21 555 716 478 52.0 1e-134 MISTKRFRVDLPLVFILLLGVFLNTYNIWLDTYANTYYTTAVASMLQNFHNFFFGSLDSA GSVTVDKPPVTFWIQTVSACIFGLHGWSVILPQALAGVGSILLIYLLVKPSFGAAAARIA ALVMACTPVAVAVSRTNNIDSMLVFTLLLGTWFLFRAVKRNSVFSLLGAFALIGLGFNMK MLQAYMILPAFVLFYLFAFKSTWKKKAGVLSGAIALMLMISVSWAVIVDSIPASERPYIG SSETNSVLELAFGYNGVSRLTGNQGGGPGGGGDRGGMPMGERRAADDGANAGGGMTPGAA GSDSGSAGTTGGQSAAGSDPLPGGSGASGGSAAVPGGADGGGMPGAPGADGQGQPPGFGS GGPGGGSGGMFGTGEKGPLRLFQSALSGQASWMIPFAAVASVALLAGLRRNNFTRKHKES LFWLAWLLPGMAFFSVAGFFHHYYLIMLAPPIAALAGAGWSEMWSAYRGKSGWLSWLLPA AVAVTAAFQVFIMAPYNGTIGSGWTYGVGLTGAAAALVLIALKFRTTRFSYAAAVAGLLV LLIGPSYWAATPITYGLNSMIPQAGPSGGNDRGAMGQGPGGGMMPGDGSRDGAGSGSQNE DGASQGTDPGALEAGNGNGPDASADGTGTGSETDRSAGGWGAPGAMDGGMGGRSVNEALL AYMKAHIGSTTYLFATSDYNTAAPYIIDKGEKVVTLGGFSGNDPVYTTAQLEDMVKTGKL KYFLISEGGGGRGGNAELAQWLAQHGKKISSEEWQSGSAQTQTGTSAANGGEGGRGGSMT LYEVTIEDGGNAS >gi|333603475|gb|AFDH01000133.1| GENE 36 40928 - 41908 843 326 aa, chain + ## HITS:1 COG:BS_ykcC KEGG:ns NR:ns ## COG: BS_ykcC COG0463 # Protein_GI_number: 16078354 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Bacillus subtilis # 1 314 1 314 323 461 68.0 1e-130 MTQKVKYSIIIPMYNEEAVIQETYRRLKVVMSGTSETYELIFINDGSRDRSAEIIKEYAT WDETVKLIDFSRNFGHQIAITAGMDYASGDAVIIIDADLQDPPELILQMIEKWKEGFEVI YAKRVKRSGETLFKKWSASLFYRVLRASTDINIPVDTGDFRLMDRKVCDEMRKLPENNRF VRGLVSWVGFRQTAIEYERDERLAGVTKYPLKRMIKLSLDGITSFSYKPLKLAGYLGVLL SGSGFLYLLYVVYLALFTDATLKGWPSVVGIMLIFNGFVLLMLGILGEYIGRIYDETKGR PLYIVRECHGLQKQEGPMPKRLAGYE >gi|333603475|gb|AFDH01000133.1| GENE 37 41901 - 42380 255 159 aa, chain + ## HITS:1 COG:BS_yngA KEGG:ns NR:ns ## COG: BS_yngA COG2246 # Protein_GI_number: 16078878 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Bacillus subtilis # 21 148 11 137 148 87 37.0 7e-18 MSNSGNLSKQSGPGGLSSPDRLGSRGNRLLPLVKFGLVGLLNTGVDFAAFLLLTEAGVPY LTAQVIAFLLGVLNSYFLNRSWTFRSRTGRGTREIARFFLINLISLAVSTVLLQWAHSGL GWPLVTGKLGATFASSWINYAGSRYWVFRLPTPTGSEKS >gi|333603475|gb|AFDH01000133.1| GENE 38 42377 - 43288 1079 303 aa, chain + ## HITS:1 COG:BS_yngB KEGG:ns NR:ns ## COG: BS_yngB COG1210 # Protein_GI_number: 16078879 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose pyrophosphorylase # Organism: Bacillus subtilis # 3 292 5 294 297 364 64.0 1e-100 MTIKKAVIPAAGLGTRFLPATKAQPKEMLPIVDKPAIQYIVEEAVQSGIESIIIVTGRNK KSIEDHFDRSVELEQTLSEKGKMKLLKEVQAISEMAKIHFIRQKEPLGLGHAILCAKQFI GSEPFAVLLGDDIMVSDPPALRQMIHLYEETGRQVIGVKPVPDSEVDKYGIIDSAGGRNR IHRVAGLVEKPSLGSAPSNVAVMGRYILEPTIFPILENIEKGAGGEYQLTDALHEIAKRE ELLALELAGNRYDIGDKLGYLKAVLEIGLNREELAAQLLPYLKNLVYQQEAEAWKLQRER RRA >gi|333603475|gb|AFDH01000133.1| GENE 39 43384 - 44382 788 332 aa, chain + ## HITS:1 COG:no KEGG:BMQ_3951 NR:ns ## KEGG: BMQ_3951 # Name: not_defined # Def: hypothetical protein # Organism: B.megaterium_QM_B1551 # Pathway: not_defined # 1 325 1 291 294 253 44.0 1e-65 MKKITLVKLMLDLAMALTLVLLFNKRVFGGLTFHEIAGLAISFALLTHILLNLQWVKKVT LRIMDRSLPGKTRFGYLLNVLLLVTMTFIIISGILISEVVFRGIRLGEERWFKMAHISIS YLVLVLIGVHVGMHWQWVIQVTGRIFSGKAPGKAGAAAAKIAAAAIVAFGAYEMYATNFL ARVEGVGSVFGITTASSPMQEGGGRQRPQNAAAGESGQPPGGFDGERQSSSTGDTSGAGE PSGEGQGAGGQDRGAPQGGGGLGAERAAGPGGFHPGEGRGGVGFASPNPLGVIAVYSAMM GVFVAVTYYTEKRGRRRKHAGSGTAQSRPKVV >gi|333603475|gb|AFDH01000133.1| GENE 40 44595 - 44951 125 118 aa, chain + ## HITS:1 COG:no KEGG:CLL_A0317 NR:ns ## KEGG: CLL_A0317 # Name: not_defined # Def: putative erythrocyte membrane protein 1 # Organism: C.botulinum_B_Eklund # Pathway: not_defined # 1 111 1 101 106 93 45.0 3e-18 MTIKHLLLELYCSQTWSNARAVATPSFCKNGVGDPGYHCLDNHCKHIGFTYAPHEIAYTG AHGEVPDSDAWIGFGGEMIPADADETRILELKKIWEEVCRKKIHEAYEEYLKLLGNQP >gi|333603475|gb|AFDH01000133.1| GENE 41 44975 - 45190 185 71 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|261368614|ref|ZP_05981497.1| ## NR: gi|261368614|ref|ZP_05981497.1| conserved hypothetical protein [Subdoligranulum variabile DSM 15176] conserved hypothetical protein [Subdoligranulum variabile DSM 15176] # 4 67 5 69 73 67 52.0 3e-10 MLTVFLLQHSYEWNQIESTKVIGIYSSKDKADAVIEKYKELPGFKEFPDDFYIDAYQVDE NEWTEGFMFEL >gi|333603475|gb|AFDH01000133.1| GENE 42 45259 - 45801 398 180 aa, chain - ## HITS:1 COG:mll4441 KEGG:ns NR:ns ## COG: mll4441 COG4675 # Protein_GI_number: 13473743 # Func_class: S Function unknown # Function: Microcystin-dependent protein # Organism: Mesorhizobium loti # 1 179 1 171 172 156 47.0 2e-38 MADAYLGEIRIFAGNYAPRDWAFCNGQLMQVRQYTALFAILGTQYGGDGKTTFALPNLMG KAPMHQGAGQGLTPRVVGQSVGSPTETLLTTEIPSHTHVPQSVNAVGSDTNPTGNFWAQS PAEGRPGREKQRNLYDPTPTVQMSPVNLSVTGGSQPHNNMQPFLAMNFIICLSGEFPPKQ >gi|333603475|gb|AFDH01000133.1| GENE 43 45820 - 46320 410 166 aa, chain - ## HITS:1 COG:mll4442 KEGG:ns NR:ns ## COG: mll4442 COG4675 # Protein_GI_number: 13473744 # Func_class: S Function unknown # Function: Microcystin-dependent protein # Organism: Mesorhizobium loti # 1 166 1 169 169 154 47.0 7e-38 MSEPFVGEIRLFANNYAPRGWAFCEGQTLPINGYQALYSLIGTVYGGDGRTNFQLPDLRG RVPIHVSPTNPLGQSAGEAAHTLTVNEMPAHTHQVSASGNPGSTFAPAANVWADETALYE PLSDPTVPMNAGTISVAGQSQPHNNMQPYLVANYAIALVGIYPSRS >gi|333603475|gb|AFDH01000133.1| GENE 44 46351 - 46851 431 166 aa, chain - ## HITS:1 COG:mll4442 KEGG:ns NR:ns ## COG: mll4442 COG4675 # Protein_GI_number: 13473744 # Func_class: S Function unknown # Function: Microcystin-dependent protein # Organism: Mesorhizobium loti # 1 165 1 168 169 158 50.0 5e-39 MSESYLGEIRMFGGNYPPQGWALCNGQILSIAENEALYALLGTTYGGDGQTTFGLPDLQG RIPVHPTQGYIRGSKAGTETVTLTQSQLPQHTHIPYATASPATANSPANNTWATAITQNY ATSGTTTPMNPQTLSSVGGNQPHDNVMPSAVITFIISLYGVFPPQP >gi|333603475|gb|AFDH01000133.1| GENE 45 46848 - 47333 350 161 aa, chain - ## HITS:1 COG:RSc0120 KEGG:ns NR:ns ## COG: RSc0120 COG0454 # Protein_GI_number: 17544839 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Ralstonia solanacearum # 8 150 18 159 164 109 38.0 2e-24 MLKKMSEPEDQPFLFELYCSSRMAEVQAWGWDEATLRSFLDMQYSAQSGSYRQQYPEAES YIVCQDGQRAGRILIHRTPHCIRIVDITLLPQFHNQGLGTKLLQTFMQEAREQNLPLRLS VLRTGRALALYERLGFHNAGENDMYLAMEWNHETCKEGDSS >gi|333603475|gb|AFDH01000133.1| GENE 46 47607 - 48996 1003 463 aa, chain + ## HITS:1 COG:no KEGG:Gura_0797 NR:ns ## KEGG: Gura_0797 # Name: not_defined # Def: hypothetical protein # Organism: G.uraniumreducens # Pathway: not_defined # 20 264 892 1134 1140 156 46.0 2e-36 MRELGKTGFWGRFLRIALVFLLVAGTGGAGNWIGRAEAAGTWDNVPNNAGTDLNQVAYGN GKWVAVGNLGTIMTSSDGLSWSKTTIALSSAVGVTYAGSQWIVTGAGGKIATSPDAVTWT VRSTGTSANLSAAAYNGTVWVIAGYSGVILSSPDGIAWTPRTSGTAANFYSVTYGGGLFA AVGSAGTIRTSPDGITWTTRSGSPEDLMGVNYGAGQFVAGGSNQRVLTSSDGITWTPRTV SVAGMNLYGIAYGANKFVAVGDTGGGPGAIASSPDGITWSAEKTGLGDFLNHVGFANGRF ITVGGAGAMLTQYNTFSTNANLSNLTLSAGTLSPAFASGTSGYTADVSYGTVSINVTPTV ADGTATVKLNGSTVASGSPSPVSLNVGANTVTVLVTAQDGTTKKTYTVSVTRAASTNADL NNLTLSGTALAPGFASGTTSYTASVANNVTSVDVTPTLANGTA Prediction of potential genes in microbial genomes Time: Sun Jul 17 10:56:10 2011 Seq name: gi|333603388|gb|AFDH01000134.1| Paenibacillus sp. HGF7 contig00016, whole genome shotgun sequence Length of sequence - 35784 bp Number of predicted genes - 36, with homology - 32 Number of transcription units - 25, operones - 6 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 144 - 1277 825 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - Prom 1305 - 1364 5.9 + Prom 1431 - 1490 3.5 2 2 Tu 1 . + CDS 1513 - 2418 756 ## COG1090 Predicted nucleoside-diphosphate sugar epimerase + Term 2453 - 2484 5.5 - Term 2437 - 2476 9.8 3 3 Tu 1 . - CDS 2482 - 2703 153 ## PPE_01677 hypothetical protein + Prom 2644 - 2703 2.3 4 4 Tu 1 . + CDS 2754 - 3548 525 ## COG0346 Lactoylglutathione lyase and related lyases 5 5 Op 1 . + CDS 3692 - 3787 75 ## 6 5 Op 2 . + CDS 3867 - 4613 1019 ## COG0024 Methionine aminopeptidase + Prom 4637 - 4696 4.6 7 6 Tu 1 . + CDS 4791 - 5897 1332 ## COG0628 Predicted permease + Term 5926 - 5962 6.5 + Prom 5929 - 5988 3.5 8 7 Tu 1 . + CDS 6034 - 6588 943 ## COG0681 Signal peptidase I + Term 6601 - 6658 9.1 + Prom 6642 - 6701 6.7 9 8 Tu 1 . + CDS 6799 - 6978 271 ## + Term 6995 - 7041 2.5 + Prom 6985 - 7044 2.1 10 9 Op 1 . + CDS 7170 - 7256 63 ## 11 9 Op 2 . + CDS 7292 - 7495 332 ## GYMC10_2898 hypothetical protein + Term 7722 - 7766 1.1 - Term 7555 - 7586 -0.9 12 10 Tu 1 . - CDS 7741 - 7974 282 ## PPE_01675 hypothetical protein 13 11 Tu 1 . - CDS 8212 - 8727 361 ## Pjdr2_1010 hypothetical protein - Prom 8755 - 8814 8.5 - Term 8891 - 8924 6.8 14 12 Op 1 . - CDS 8982 - 9188 95 ## BBR47_32090 hypothetical protein 15 12 Op 2 . - CDS 9287 - 10489 1098 ## COG2866 Predicted carboxypeptidase - Term 10606 - 10640 -0.2 16 13 Tu 1 . - CDS 10699 - 11508 824 ## COG0796 Glutamate racemase - Prom 11587 - 11646 3.8 - Term 11616 - 11659 10.4 17 14 Tu 1 . - CDS 11715 - 12758 907 ## COG0726 Predicted xylanase/chitin deacetylase - Prom 12785 - 12844 2.6 + Prom 12730 - 12789 3.6 18 15 Tu 1 . + CDS 12918 - 14375 1074 ## BL01689 hypothetical protein + Term 14425 - 14461 10.3 - Term 14411 - 14451 13.6 19 16 Op 1 1/0.000 - CDS 14599 - 15792 1090 ## COG1835 Predicted acyltransferases 20 16 Op 2 16/0.000 - CDS 15810 - 16856 1222 ## COG0673 Predicted dehydrogenases and related proteins 21 16 Op 3 1/0.000 - CDS 17288 - 18136 897 ## COG1082 Sugar phosphate isomerases/epimerases 22 16 Op 4 38/0.000 - CDS 18214 - 19086 962 ## COG0395 ABC-type sugar transport system, permease component 23 16 Op 5 35/0.000 - CDS 19129 - 20073 1095 ## COG1175 ABC-type sugar transport systems, permease components 24 16 Op 6 . - CDS 20256 - 21521 1556 ## COG1653 ABC-type sugar transport system, periplasmic component - Prom 21660 - 21719 6.7 - Term 21829 - 21872 2.2 25 17 Tu 1 . - CDS 21884 - 23185 1433 ## COG1486 Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases - Prom 23224 - 23283 2.8 26 18 Tu 1 . - CDS 23331 - 23765 524 ## COG1495 Disulfide bond formation protein DsbB - Prom 23804 - 23863 6.6 + Prom 23763 - 23822 3.9 27 19 Tu 1 . + CDS 23870 - 24730 735 ## COG2207 AraC-type DNA-binding domain-containing proteins 28 20 Tu 1 . + CDS 25245 - 25820 327 ## PROTEIN SUPPORTED gi|149909270|ref|ZP_01897926.1| Ribosomal-protein-alanine acetyltransferase (Acetylating enzyme forN-terminal of ribosomal protein S5) + Term 26019 - 26062 9.0 - Term 26007 - 26050 12.5 29 21 Op 1 14/0.000 - CDS 26067 - 27380 1825 ## COG1653 ABC-type sugar transport system, periplasmic component 30 21 Op 2 38/0.000 - CDS 27556 - 28392 1119 ## COG0395 ABC-type sugar transport system, permease component 31 21 Op 3 . - CDS 28389 - 29273 1071 ## COG1175 ABC-type sugar transport systems, permease components - Prom 29341 - 29400 4.4 + Prom 29282 - 29341 6.8 32 22 Op 1 7/0.000 + CDS 29513 - 31330 1755 ## COG2972 Predicted signal transduction protein with a C-terminal ATPase domain 33 22 Op 2 . + CDS 31327 - 32952 1862 ## COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain + Term 33047 - 33091 13.6 - Term 33038 - 33075 11.5 34 23 Tu 1 . - CDS 33092 - 33433 530 ## GYMC10_4639 general stress protein 35 24 Tu 1 . - CDS 33897 - 34418 406 ## - Prom 34488 - 34547 4.7 - Term 34547 - 34595 5.2 36 25 Tu 1 . - CDS 34610 - 35680 1107 ## COG2603 Predicted ATPase - Prom 35710 - 35769 1.7 Predicted protein(s) >gi|333603388|gb|AFDH01000134.1| GENE 1 144 - 1277 825 377 aa, chain - ## HITS:1 COG:BH0386 KEGG:ns NR:ns ## COG: BH0386 COG0454 # Protein_GI_number: 15612949 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Bacillus halodurans # 12 160 1 149 294 125 42.0 9e-29 MIAIRKLSECTLDQAVQVWNDGFSGYFVDMTTNPGAYMTRQAYEQLSPQHSIVAFDGEQP VGFVLNGIRMAGGRKISWNGGTGVIPAYRGQGVGRKLIEASLDIYREEGVDTATIEAFAD NAPAIALYESVGYVTRDTVLVLRKAGGAAGVGPSEGTGESRGALGDALPPAAAETDAAAV RAGGSAHASGGSAARQADAPEEGRRGHGALSAAEAGQPDGGRSAGRAKAAAARHNDAAGR YTLRHGTARDAGLLPFYPALGAWRGHWASLPAGESLIMLEDGKPAGYALYMRVYEASGKL AGVTLYQCEASPDNRDPETMLRTLLETVLDGYGEVSFSASHIPSSRTDLIRLLEERGFET AHEMVWMTRDMTEEGRA >gi|333603388|gb|AFDH01000134.1| GENE 2 1513 - 2418 756 301 aa, chain + ## HITS:1 COG:slr1223 KEGG:ns NR:ns ## COG: slr1223 COG1090 # Protein_GI_number: 16330099 # Func_class: R General function prediction only # Function: Predicted nucleoside-diphosphate sugar epimerase # Organism: Synechocystis # 1 297 33 339 339 240 42.0 3e-63 MRIAISGGTGFIGGHLIAHFKKRGDELILISRSASGHAYAGVQTVTWSEIEHNPRYLEGT DAWINLAGSTINQRWSETAKRQILSSRLKTTAAVASTLKALQNKPPVVVNASAMAIYGTS ETHTYDEFSPVRADDFLAEVVKEWEEAADRIPAERIVKIRTGLVLGTDGGAFPKMALPFK FGAGGRIGSGSQWMSWIHIADMVALIDACIRNEDISGPVNATAPHPVRNREFAQTLGSVL RRPHVLPVPAFALKLVLGELSMLLLEGQRVLPRKLLEHEFQFRYPTLEEALLELTGAERP A >gi|333603388|gb|AFDH01000134.1| GENE 3 2482 - 2703 153 73 aa, chain - ## HITS:1 COG:no KEGG:PPE_01677 NR:ns ## KEGG: PPE_01677 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 1 73 1 73 73 108 67.0 1e-22 MANDIRICDKCKHMRVKTALPKLQKLASDAEVKVGCKSYCGPCARYAFVFINGRYIKAPT EDEAIEHAKKFVK >gi|333603388|gb|AFDH01000134.1| GENE 4 2754 - 3548 525 264 aa, chain + ## HITS:1 COG:BS_yndN KEGG:ns NR:ns ## COG: BS_yndN COG0346 # Protein_GI_number: 16078847 # Func_class: E Amino acid transport and metabolism # Function: Lactoylglutathione lyase and related lyases # Organism: Bacillus subtilis # 123 263 3 143 144 188 63.0 8e-48 MRNVEVIDPDAVEQRLIFLQQDVNILIGRNDYIVIRLCIETKRIVSVIAVVVAYLDADQK TLVLFFLQFEFQNFSCVARNFDVHSVVTSPEKLSFFLLTFIVKKASPEINKKSQAGGGKA VTIRGINHLLVSVSDLERSIRFYREVLGARLLVQGRSLAYFDLGGLWLALNTERDIPRNE IRQSYTHLAFTVDEKDLPALEAKLAACGALLPGRERDSRDKSSLYFEDPDGHKFEFHTGT LQDRLDYYRAEKGHMRFFGDPTAD >gi|333603388|gb|AFDH01000134.1| GENE 5 3692 - 3787 75 31 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MEFGLSYGLWEAFQATLTFIGMSIAHNGVFF >gi|333603388|gb|AFDH01000134.1| GENE 6 3867 - 4613 1019 248 aa, chain + ## HITS:1 COG:lin1821 KEGG:ns NR:ns ## COG: lin1821 COG0024 # Protein_GI_number: 16800888 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionine aminopeptidase # Organism: Listeria innocua # 1 248 1 248 252 338 61.0 6e-93 MVTIKTKDEIEKMHRAGKLLAACHREIAKMIRPGVTTWEIDQFTEQFLHENGATPEQKGY KGYQYATCASVNDVICHGFPKKEPLNNGDIVTIDMVVNLDGWLADSAWSYAVGTVSEEAG NLLETTKESLYKGIEQAVIGNRIGDIAHAIQVFAEERGYSVVRDFTGHGIGQKMHEEPQV PHYGPAGRGTRLKDGMVLTIEPMLNTGMYFATVDLDGWTARTVDGSLSAQYEHTIAITQD GPLILTAQ >gi|333603388|gb|AFDH01000134.1| GENE 7 4791 - 5897 1332 368 aa, chain + ## HITS:1 COG:BH0463 KEGG:ns NR:ns ## COG: BH0463 COG0628 # Protein_GI_number: 15613026 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Bacillus halodurans # 98 337 100 339 372 91 27.0 3e-18 MISFYKRYYKTILDIGLIVLTVFLFMKLFSFIYAIATPIFWAFVIFAMIEPLARFLHRRG LKKMLATTISTLLFVLVILAVFTGAGFLFTSQIDNLVTVLPKYTQMLQEQITKRTIDLQN SIEALPPDVIEKSREIANQMATKATSFATNFLKTLLNFLTSGVMGLVTSFSTFMLNFVVG VILAFFLSLEIDWWKKNAREKTPKTFRKAFDFLRENVIKGIVSYLKSQLILISITFVMVL VSLMILGVDNAFTISLLAAFFDVLPLLGVSTLFVPWIVYHFIAGSTMMGIWLTVVLAVVV LVRQVLEPKITGESLGVSAFTMLSFMIISLSLFGVAGVILSPILIILIKALYDQGYLRKW IRTPEDEY >gi|333603388|gb|AFDH01000134.1| GENE 8 6034 - 6588 943 184 aa, chain + ## HITS:1 COG:SA0826 KEGG:ns NR:ns ## COG: SA0826 COG0681 # Protein_GI_number: 15926554 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal peptidase I # Organism: Staphylococcus aureus N315 # 6 179 3 168 191 101 34.0 6e-22 MNKVAKEIGGWALSLGIAFVIALVIGIFGIQPTKVLGHSMDPTLSDQERIYVSKLSHTLG YEPDYGDIVIIDSRVNRERTLKDDIMEHPLFSLLSGKVDDNLYVKRVIGKAGDKLQFKDN KVYRNGQPLDEPYLNETMLYESNEEITVPAGHVFVMGDNRNNSKDSRDIGPVPLDHVLGI KING >gi|333603388|gb|AFDH01000134.1| GENE 9 6799 - 6978 271 59 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNPNLHIPQGDETILVEMTVKEAMALSGEKFHSDHKVETEAIKKVKKSLENRLISGVSQ >gi|333603388|gb|AFDH01000134.1| GENE 10 7170 - 7256 63 28 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSHKQQGHARQNTTTRTSDRKNGNGKSK >gi|333603388|gb|AFDH01000134.1| GENE 11 7292 - 7495 332 67 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_2898 NR:ns ## KEGG: GYMC10_2898 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 61 1 60 60 62 62.0 4e-09 MIENLESNYDCAHAGLDLHQLKEELNDLRISMIPGSLVHSEKVNRLENQIRFIENKCSIH HGDSHSL >gi|333603388|gb|AFDH01000134.1| GENE 12 7741 - 7974 282 77 aa, chain - ## HITS:1 COG:no KEGG:PPE_01675 NR:ns ## KEGG: PPE_01675 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 2 75 4 77 88 95 66.0 5e-19 MKKLLSLRHWGHVFKRAGKLLMSPQVPIGSKLLFVVPALLYWVLPDVLPFMPIDDIAVTM MLANWFTGWMERKYPQA >gi|333603388|gb|AFDH01000134.1| GENE 13 8212 - 8727 361 171 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_1010 NR:ns ## KEGG: Pjdr2_1010 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 3 168 4 156 156 83 33.0 3e-15 MSGILPLDQFKELEREEQIRLINQWKEDYSVGEITSAWKLNNAATYYTILKKLNIYNDTV RTSNKFMGYTNYRSQSRSLERPSEPSDFRRLPESVQAENRPAVSAPALSISDNFRYNVNG TYPAEEVAQILERLSLFLKIRSHVPVNVELNIRFGDSDAVTSELQSGEPHS >gi|333603388|gb|AFDH01000134.1| GENE 14 8982 - 9188 95 68 aa, chain - ## HITS:1 COG:no KEGG:BBR47_32090 NR:ns ## KEGG: BBR47_32090 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 20 66 18 64 65 65 72.0 9e-10 MAGKSGKAKGKKVESSGRAQYTMRIVESSTCASCKQQCARGLRYLEQMSRPGALGTGVPC ILTRRKLT >gi|333603388|gb|AFDH01000134.1| GENE 15 9287 - 10489 1098 400 aa, chain - ## HITS:1 COG:BH1603 KEGG:ns NR:ns ## COG: BH1603 COG2866 # Protein_GI_number: 15614166 # Func_class: E Amino acid transport and metabolism # Function: Predicted carboxypeptidase # Organism: Bacillus halodurans # 55 400 3 351 355 267 39.0 3e-71 MPFRHVVQQGETLQRIARLYAVNSVSLKAANPQLSLHEYVIPGQMILIPAKLDHQYTVQP GDAWESVSLRFGLSGEELWKANTFLDPAVLRPGVTIDVPAVRDRSVVRTDEEYGYPEMLR DLTLLKERYPFLEETCIGHSVLGRNIPAVRIGTGSREIQVNASFHANEWITSLAAVKFLE EYAEAVRQSGDLHGSDAAALFRETSLWIVPMVNPDGVELVLGGVYPAHPLFDSLHEWNGG SFDFRRWKANINGVDLNDQFPAFWEEERARRAVPGPGPRDYTGEAPLTEPEAIAVAEFTR SRSFRHVVALHTQGREIYWNYRDYEPDDAEFLALKLQQASGFKSVKLRGSDAGFKDWFIY EFRRPGFTVELGSGINPLPLEQFPALYEETARLLVRALAL >gi|333603388|gb|AFDH01000134.1| GENE 16 10699 - 11508 824 269 aa, chain - ## HITS:1 COG:BS_racE KEGG:ns NR:ns ## COG: BS_racE COG0796 # Protein_GI_number: 16079891 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glutamate racemase # Organism: Bacillus subtilis # 1 256 2 258 272 281 54.0 6e-76 MQQAIAILDSGVGGLTVVKEVMRQLPQEKVIYFGDTARTPYGPRPADEVLTFTNQLVDYL IQFNPKMIVIACNTATAVALEQIRDRLDIPVLGVISPGARAAIKTTRSGIVGVIGTEGTI RSKAYEQALKTISPTIQVHSLACPALVPLVERGLYFSEEAVDTVRDSLQPLLDKPMDCLI LGCTHYPFLTEAIARVVDPEVTLISSADETAREISTILYHRGMLATTKDIPVHQFFCSGD AEMFHHITGSWLREQLLGTPVVWQVPTFV >gi|333603388|gb|AFDH01000134.1| GENE 17 11715 - 12758 907 347 aa, chain - ## HITS:1 COG:BH0895 KEGG:ns NR:ns ## COG: BH0895 COG0726 # Protein_GI_number: 15613458 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted xylanase/chitin deacetylase # Organism: Bacillus halodurans # 160 339 69 249 264 159 39.0 8e-39 MKKTAAASAVLLLSGILAAGCAGNSNVSNSGSPVQSPAATAGASASPTTASSPAPEKTPA GSPKPSASPSASAAPGDSPAPSSAVKASPSAAPSAAPSAKPSASPGTAKPSPQPKGESGA SRQALSWYYMKKPKGQVPDFPKETKSFTAKEKAVWVGQGKNVYLTIDNGGPMGDTAKLLK TLKENNVKANFFISGNNVKAHPDFIKQLVADGHLVANHTMTHKDMNTLSDEQVRKEITDF EKLYKNITGQDVVKYFRFPYGKYSTHLLDLTSDMGYTSVFWSTAMRDWEPRANGAEDPYN DIMNNLHPGNIILMHQGSKENMEALDRILKDVKKAGYSFGLVSEIKR >gi|333603388|gb|AFDH01000134.1| GENE 18 12918 - 14375 1074 485 aa, chain + ## HITS:1 COG:no KEGG:BL01689 NR:ns ## KEGG: BL01689 # Name: ycdC # Def: hypothetical protein # Organism: B.licheniformis # Pathway: not_defined # 1 480 1 458 465 226 34.0 2e-57 MLIDELKQKAAVTGSVPAHFNLIIEDIHEPEDGETEVLFVWQEPSGESGISVTLDAAGRL LSYSVDEELCKEAAPIGEEALRERARSFFLSQRPEAADRFLLTESRFGERSVFFQWAQTA LDLPLPQTGAFMRLTLSGEVTSFTYKGTAASPPLPASLAQPERLRQQLAETVRMSLAIVK LIPALYAGGDDRLRLVYQPEPGYRRFDAATGLAQGTEAEAEEEHEAYKAYELSPEETDDS LGSLEELIGISTYPLVRDRERDMDENLKGIVWHAADREENPADLSLDGYFRRRMEDTVKA TADKDTGRLRSFIWMIRRPGKLALSYEECLERADAFLRKAMHDWLQVPGLAFYLQEKSDE DAGSESEGQLRYFFTWQLRYEDVPLYLQFVTLCVNASTGYVDRFSGTDWNPEEIRNLAPA AKLNADEAHRLYVEAVDFKLEWERDYDAETPEGAYNLLYTPILKGSGRSRIAFIDAANGE FVTQA >gi|333603388|gb|AFDH01000134.1| GENE 19 14599 - 15792 1090 397 aa, chain - ## HITS:1 COG:MA3638 KEGG:ns NR:ns ## COG: MA3638 COG1835 # Protein_GI_number: 20092438 # Func_class: I Lipid transport and metabolism # Function: Predicted acyltransferases # Organism: Methanosarcina acetivorans str.C2A # 5 394 19 410 425 208 36.0 2e-53 MNEPKITYLDGLRGAAALVVVFAHFLQVFLPSMFEARPQVSHFAFDQWIPRTPLNLLFNG NFAVCLFFVLSGFVLSRRFFRYRKRSIVTAALLKRYFRLAVPAFCSLLLAFAVMKLDWNF YEEARGYTRATMPDPYTTVPSFAALLEQGFVHTFFEYGMAYNPVLWTMTYELFGSFLVYG LLLAFGMSRFRFILYAAGVWLFRDSYYLGFVLGMLLSDLSAVSGRNLIALRPGAIPAVLA LLGLFLGSVPYVGWQGTVYAWLPLGPDGFPGVVAYRTAGAALVLLALLNSPSGQKLFAGR PMAYLGKLSFSLYLVHFAVLCSFSCLLFLRLDGWLPYGLNILVTTLVSLPLIFALAHLMY RLIDEPVVSLLSRVRFAARSRRNTDAAARHAGTEADL >gi|333603388|gb|AFDH01000134.1| GENE 20 15810 - 16856 1222 348 aa, chain - ## HITS:1 COG:BH2165 KEGG:ns NR:ns ## COG: BH2165 COG0673 # Protein_GI_number: 15614728 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Bacillus halodurans # 3 347 6 347 348 221 35.0 1e-57 MSIRVGVIGTGSIAHMFHLKHYKDHPDVELTAVADIDKDRADRTAAEYGTASYASAEEML NAERLDAVSICTFNDSHVALSLLALERGLDVLVEKPMAMNRDEALRLRDKAAGSDRLVMV GMSHRYRADAQALQGMVASGGLGSIYYAKTKILRQRGVPEGWFTDSRYSGGGPLMDIGVH VLDLAWWMMGCPQPESVTGKLFRKIAPYSTKGIAAYTAHSDINKSEGVYDVEDLGTAFIT FTNGAVLTVEASWAVNGSQDDAVKVELYGTQGGGSLEPLSVFTEVNGFPVEHKLSVPSVD YYKAEIAHFIDCVKTRRQPLSDAAQGCEVVGMLEAIRHSSESGELIRL >gi|333603388|gb|AFDH01000134.1| GENE 21 17288 - 18136 897 282 aa, chain - ## HITS:1 COG:CC1300 KEGG:ns NR:ns ## COG: CC1300 COG1082 # Protein_GI_number: 16125549 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar phosphate isomerases/epimerases # Organism: Caulobacter vibrioides # 34 262 39 272 299 62 30.0 8e-10 MKISLSMWSVHAYWYGGKWDVTDFLRFAAGTKAEGVELLSVFWKDRERELPEIDRVLDEL GLEVACFCACNNFVTADAEERAAQLREVKEAVDMAVHFGAPVVRVFSGDRPDETMPVDEG MGYVLEGLKAAAAYAEEKGKVLCLENHGLFAGRSDQVLEIIREVGSPALLSTFDTGNFLL VGEDPSAAVQKLRGRVGHVHVKDFLRTEPGAEGSINALDGTPYAGRIAGEGDVDLSYIFR ELAASGYDGWLTVEFEGLEEPAEGSVKALDYVHEQVELLKRE >gi|333603388|gb|AFDH01000134.1| GENE 22 18214 - 19086 962 290 aa, chain - ## HITS:1 COG:SMb20969 KEGG:ns NR:ns ## COG: SMb20969 COG0395 # Protein_GI_number: 16264842 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Sinorhizobium meliloti # 20 288 1 270 270 204 39.0 1e-52 MPGTPAGMPKNRRRRPLLVLRRTILPHAALSLLGLIFLFPFIWLLLTSLKNPSEIFQVPP AFFPEKWQWSNYGNAIGSIPFFLYMGNTLLLCAVNIVGQLFSAPLVAYSITKIPWRGRGI IFSLVVATMILPAQVQMIPVYIIFAKLGWINTFLPLTIGSFFGAPFYIFLLRQFMMGIPG ELCEAAKMDGASELRTYGQIIVPLLKPPLMTIALFTFVGTYTDFMGPLIYLNDNTKWTIT VGLQGFLQDHGAQWELLMAASAIFTIPMVVLYFFGQKYFMKAGSTLSGFK >gi|333603388|gb|AFDH01000134.1| GENE 23 19129 - 20073 1095 314 aa, chain - ## HITS:1 COG:BS_yesP KEGG:ns NR:ns ## COG: BS_yesP COG1175 # Protein_GI_number: 16077765 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Bacillus subtilis # 15 311 11 304 309 227 44.0 2e-59 MSADTLNARAGRPARSRKARRDFWVGTAFALPWIVGFLAFTVYPFFGSLYFSFTSYDLFN SPQWVGLQNYMEILKDETFYKSLRNTFFMAFISMPIGLLSSLLIALLLNVKVKGIAFYRT VYYLPAVIPVVASAILWTWLLNPDYGLINMLLRSLHLPDPAWLLDPRYTKPSLILMGLWG SGAGSLIFLAALQGIPQQFYEAASIDGASVWRRFWHITLPGLSPVLLFQLIMGLIGSFQI FTESFILTGGNQGGALGGPDHSLMFYAVYLYQTAFMYLKMGYASALAWILFVIVVLMTVL VLKTSARWVYYGGD >gi|333603388|gb|AFDH01000134.1| GENE 24 20256 - 21521 1556 421 aa, chain - ## HITS:1 COG:lin0762 KEGG:ns NR:ns ## COG: lin0762 COG1653 # Protein_GI_number: 16799836 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Listeria innocua # 1 410 1 402 417 129 27.0 8e-30 MRKFTAGMLAAVMASAAALSGCSAVGGGGKTELNFWYGWTGPEAEALEKLIKEFNDTHDG IKVKGLSQSDYQKQLTAITGGNPPDIASQFGQNVASWGVKGAMIPLDEYIKKDQVDLADF IPSALSTSQYEGKTYAIPIAMHFSMLYYNKDLLKEAGFDGPPKTIAELKTYAEKLSVVQE GGRLDRLGLWPGADAYTFTQVFGGKFWDPDKKEVTPDDPGFKQAILLSKELWDKYGTENL DRFSASLGKYQSSQNPFFSGKYAMALDGEWLPTFIKQYAPGLNYGIAPIPYSEDKPELKN AGSIATSVFYIPKGAKHPDQSWTFLKWLTEKQQMVKFTAALGNLPTRLSSLDDKTYDSVP GFKEYTEYAKSPNLKSFPTLPFMNEYMDEITKKYNDILRGKVGVDEGLKQIKDKIQPLVG K >gi|333603388|gb|AFDH01000134.1| GENE 25 21884 - 23185 1433 433 aa, chain - ## HITS:1 COG:BH2228 KEGG:ns NR:ns ## COG: BH2228 COG1486 # Protein_GI_number: 15614791 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases # Organism: Bacillus halodurans # 1 431 1 433 434 695 73.0 0 MSKITFMGAGSTVFAKNILGDCMVTEALQGYELALFDIDGERLRDSETMLNHIKNTVGST CRIKAYSDRKEALRGAKVVINAIQVGGYDPCTIMDFEIPKKYGLRQTIADTVGIGGIFRN LRTIPVVLDFARDIREVCPDAWFFNYTNPMAVLTNVLNTHGGVKTVGLCHSVQACVPSMF RHLGIDPEGVQSKIAGINHMAWLLEVTKDGKDLYPEIKRLAKEKQKEKHHDMVRFELMFR FGYYVTESSEHNAEYHPYFIKRNYPELIDEFNIPLDEYPRRCVNQIERWKNLRAELVNNP QLEHKRSGEYASYMIEAMETNVPYKMGGNVMNTGLITNLPKEACVEVPCLVDASGITPTY IGDLPPQLAALNRTNINTQLLTIEAAATRKKEHIYHAALLDPHTSAELSIDDIVALCDEL IEAHGDWLPAYTS >gi|333603388|gb|AFDH01000134.1| GENE 26 23331 - 23765 524 144 aa, chain - ## HITS:1 COG:BH1941 KEGG:ns NR:ns ## COG: BH1941 COG1495 # Protein_GI_number: 15614504 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Disulfide bond formation protein DsbB # Organism: Bacillus halodurans # 10 131 7 128 137 127 54.0 5e-30 MKSNSFLKNNALHMAWAISVVATLGSLYFSEIMDFTPCKLCWYQRILMYPLVLILGIAAT RKDNKQVIYALPFSVWGMGISLYHYLMQKTPLFKEAASKCGIVACDQDYIDWLGFITIPL LAFTAFTLITVILGLLWVQMRKER >gi|333603388|gb|AFDH01000134.1| GENE 27 23870 - 24730 735 286 aa, chain + ## HITS:1 COG:BH2229 KEGG:ns NR:ns ## COG: BH2229 COG2207 # Protein_GI_number: 15614792 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Bacillus halodurans # 9 277 8 278 287 227 41.0 2e-59 MLKPFHSVSVNPYNGKGELFVLFAGYGQTAPCHEVGPQMLDYYLIHTVESGKGRFSCLGK EYDLGPGDTFVIFPGEVVTYASDKRDPWRYRWIGFKGSSADDLLIRLGITAQRPVVHAEG LPRLPVFLRRAERALREAGPACDLQAEGELRLLLARLASHTDVPRRRGEETDAGRQQIDR AVRWLQLQYAQPVTIEQLAQHMGYHRTYLSKLFRQHTGLTPTQFLLKIRMERAKLLMTEG STIEQIAYSVGFSDPLYFSKQFKKWFGCTPSEYRTKHGRLAYDCSR >gi|333603388|gb|AFDH01000134.1| GENE 28 25245 - 25820 327 191 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149909270|ref|ZP_01897926.1| Ribosomal-protein-alanine acetyltransferase (Acetylating enzyme forN-terminal of ribosomal protein S5) [Moritella sp. PE36] # 6 190 1 185 192 130 38 1e-29 MNRISLLSPGGRFETGRLYLRLLAPEDAPALLDYRQRNRAEHAPWEPVRGEAFFTAEAQQ AAIRGFEDESATDRAYSFGVFHQPDGLLIGTVRLSHIGRGPFQNAYVGYSIDAAHGGRGL MTEALRECLRIAFGPLGLHRVQAAIIPRNERSLRVAEKCGFVRIGLSPRYLNIAGVWEDH ILFALTSEDFG >gi|333603388|gb|AFDH01000134.1| GENE 29 26067 - 27380 1825 437 aa, chain - ## HITS:1 COG:Cgl2408 KEGG:ns NR:ns ## COG: Cgl2408 COG1653 # Protein_GI_number: 19553658 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Corynebacterium glutamicum # 34 437 17 439 443 142 27.0 1e-33 MTRNKKWIAVGLTTALVGGLLAGCGNKDQGQGGASPSGSPAAGGEKKNVTLKMFQFKVEI AEALSKLIAEYEKETGVKIEVQTVGGGADYGAALKAKFNSGDKPDIFNNGGNSDLDVWQE HLEDLSDQPWVKDLAQGAGDPISKDGKIYGMPVGLEGYGYIYNKDLFQKAGITELPKTLT QLEDAAKKLQAAGTTPFVNGYGEWWVLGNHFVNVPFANQPDPDKFIKGLNDGSQKIPGNA VFDNWVKLFDLTLKYGNKNPLQTDYNTQVTEFATGKAAMTQQGNWTQVQISKTNPNINIG FLPMPISDDAAANDKLLVGVPNNWVINKNSPNKDEAKKFLNWLVTSDMGKKYITNEFKFI PAFKTISVDEKVVGPLAADIMKYAKDGKTLSWNWFKFPGGEATSKKFGDTMQGYVGKQIS KDQMLQDFQKAWDSLKK >gi|333603388|gb|AFDH01000134.1| GENE 30 27556 - 28392 1119 278 aa, chain - ## HITS:1 COG:Cgl2406 KEGG:ns NR:ns ## COG: Cgl2406 COG0395 # Protein_GI_number: 19553656 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Corynebacterium glutamicum # 9 278 31 304 304 197 42.0 2e-50 MSSGSKYTSRTFILEVLTALLGILFLVPFYFVLVNSFKPFAELLQNTASLPKSFSLDNYS RVVDIIHFPQVMGNSLMITVLSNIGLVIFASMSAYRFVRKPTKLNNLLFLLFVAAMVIPF QSIMIPLVKVANNLGLMDSRLGLVVCYFGFGVSLNVFLFHGFIKSIPKEIEESATVDGCG WFSIFWRIVFPLLKPIAVTVILLNSLWIWNDYLLPSLVLTNTKLHTIPLATYAFFGQYTK QWDLAMAALTLGVLPIIIFFLLLQKHIIEGITAGSVKG >gi|333603388|gb|AFDH01000134.1| GENE 31 28389 - 29273 1071 294 aa, chain - ## HITS:1 COG:Cgl2407 KEGG:ns NR:ns ## COG: Cgl2407 COG1175 # Protein_GI_number: 19553657 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Corynebacterium glutamicum # 15 294 11 281 281 191 41.0 2e-48 MTTRSKTHDGLQQWVFVGPALLFFTLIVVVPFLMSLYYAFTEWNGVSEGVKFIGLDNFKR IIFEDTDFHNAFWFTIRFSAAMIILTNLVGFVLALLLTKAFKTRNVLRTVFFMPNVIGGL LLGFIWQFIFVKGFASIGEMTGISFFNLPWLGDAPTAFWGIVIVSVWQGAGYLMVIYIAA LANVPKDLMEAATIDGAGKWQLLRSVTMPLIMPAFTVCLFLTISWAFKMFDLNLSLTKGG PFNSTESVALNIYQEAFRNNRLGLGTAKALIFFFVVALISLIQVSYTKRKEVES >gi|333603388|gb|AFDH01000134.1| GENE 32 29513 - 31330 1755 605 aa, chain + ## HITS:1 COG:BH1122 KEGG:ns NR:ns ## COG: BH1122 COG2972 # Protein_GI_number: 15613685 # Func_class: T Signal transduction mechanisms # Function: Predicted signal transduction protein with a C-terminal ATPase domain # Organism: Bacillus halodurans # 276 596 262 568 586 150 29.0 8e-36 MRSRLRNKLIAFILAATILPIATSILVSHFYTQSKLEDKAIRDNLNLIHQGKLNLDTYLQ SVEQNMKLLYHNTVMMEILENRTDNFFSESRLFLTEQEILRSMQTLKYASQDVRQVYLYV EQARKSYLLSENRLVRTDQGAAPFKPDIRREESRITPPHPMSAYGKQFFIYSSGDVFTYQ TALTNIVDNIPLGSLSLDFSPDTIKAICDELYTKGSEELYIIGPSGEIMYQAHPDPEGSK KPVPWLQELKKSAAQAERGYFRSEDASYNGIHIYESIHAPGGSWLLVKGVPDSVLYKSQR ELTGIWTLVGVIFLGLATVVTIYVSLRMTAPISALIGYMNKIESGNMNVDIRVKADDELG VLARRFRSMMHTINELILREYKLEVANKTNELKALQAQINPHFINNALQSIAARSLQKGD REVYSLISSLGKMMRYSMKTEETIVPLKSEWDYAKSYIKLQKQRFRDQFEAEMELEPGLE SILVPKMVIQPLVENYFKHGFDGSRSDNIVRIVCRSSDNRSLLHIEVSDNGLGIGENELT ALRADLEACMAEMGEPGSHIGLANVLSRLKLYYREQTTMEIDRGEDVGFRVLLTLPIMQE EGEPE >gi|333603388|gb|AFDH01000134.1| GENE 33 31327 - 32952 1862 541 aa, chain + ## HITS:1 COG:BH1123 KEGG:ns NR:ns ## COG: BH1123 COG4753 # Protein_GI_number: 15613686 # Func_class: T Signal transduction mechanisms # Function: Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain # Organism: Bacillus halodurans # 2 534 3 526 526 151 24.0 3e-36 MKALIIDDEAHVRETIRLLVDWQQYGITEVLEASSGEEGIRLMGAEKPQLVFTDIMMPGL TGLDVLSRIAESGVPIKAIVISGYDDFTYVRSALQFGSFDYLLKPIDEEELEEAVGRAVA AWRSEENERTQRLQSETKANLYKPMLADKSFVQLLLDPEQYPLHAETLEREFGIGRDQKQ VLAAVVSLQPLDARLQAKFESAMDLLLFAVTNICSEFMSKSNLGLAFRHWHRHAAVLLFF DRFHQAGAILEEINAGLYAALRGNFHLGYGTVQPFPSGIQRTFHEAETALQLRNLREQDI FLHPYHVRRQALGTLQAPLAAREDELTLAVRMNDLAGIRRVLEQWELQIRKLPYIHTRQL EMWWQEFTLLHSRLLLENEVDEDGEEQLGTADDLSFCLPLDEHGKPDLAIWTKRMESILT GIAQFLLRGDRNSVIRSIEKYVRLHYREQILLDDLSERFHLSPSHISRSFKTEFGENLSD YVTRLRINKAKLLLADPELKINTVAEAVGYQDEKYFSRAFKKSEGISPNLFRKRNACPAV D >gi|333603388|gb|AFDH01000134.1| GENE 34 33092 - 33433 530 113 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_4639 NR:ns ## KEGG: GYMC10_4639 # Name: not_defined # Def: general stress protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 6 100 4 95 120 63 46.0 2e-09 MANSTRTKDLVFGALFGSVVGAVTALLFAPKSGKELRSDIAVQAANVSEKTQEIARTVGE KTSELVGKAKEVTLNATEGIRSFKSGEGQIPGKLAAEEIAASEAAQDLVILGK >gi|333603388|gb|AFDH01000134.1| GENE 35 33897 - 34418 406 173 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTWIELSAVCAAIAFAVLVWQAVLALQAFRQSLIRLEEALGQSRLRLEETADRTAELLQE TRELAAETRSHLRTARSVLDGAAKFGAALHEGAEAVGGAASALAESVLKVQQAVHTRQNR IVEAADWTAAGIELWRRWQNSRNEAAAGSSAPSPDSGAPSPDPRGKGVSPGGL >gi|333603388|gb|AFDH01000134.1| GENE 36 34610 - 35680 1107 356 aa, chain - ## HITS:1 COG:Cj0500 KEGG:ns NR:ns ## COG: Cj0500 COG2603 # Protein_GI_number: 15791864 # Func_class: R General function prediction only # Function: Predicted ATPase # Organism: Campylobacter jejuni # 9 309 6 300 332 133 30.0 5e-31 MFRDITVEQLLELQEQRGIQLIDVRSEGEFEEFTIPGSRNIPVFDNGERKEVGTIYKQVS VQAAKEKGLEIFSAKLPSFIKQFEEIPGQKAVFCWRGGMRSKTAATVTSLMGIQMYRLSG GIRSYRKWTHEKLETFEFKPVCVVIGGPTGSGKTELLQKLKEAGYPVLDLETMAQHRGSI FGQIGLRPSNQKTFESRLVHELMEVNEQPFVLVEAESKRVGKVVMPDFLFNAKETGIPLF LDIPMERRVANIVADYQPSLHKEECIDAYQLIKKRIHSPIAAAIEQYLKEDRFGEAVALM LEHYYDPRYAHAAQNYEQETVTLQAADTDEAFRLVTAQLKERFPGYRPKVQSSNAV Prediction of potential genes in microbial genomes Time: Sun Jul 17 10:56:56 2011 Seq name: gi|333603384|gb|AFDH01000135.1| Paenibacillus sp. HGF7 contig00138, whole genome shotgun sequence Length of sequence - 2218 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 18/0.000 + CDS 59 - 1063 540 ## COG0477 Permeases of the major facilitator superfamily + Prom 1177 - 1236 5.2 2 1 Op 2 . + CDS 1263 - 1736 275 ## COG1846 Transcriptional regulators Predicted protein(s) >gi|333603384|gb|AFDH01000135.1| GENE 1 59 - 1063 540 334 aa, chain + ## HITS:1 COG:lin2977 KEGG:ns NR:ns ## COG: lin2977 COG0477 # Protein_GI_number: 16802035 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 1 310 138 451 470 103 27.0 5e-22 MYGATQGIAATAGQIIGGLLLRMNLWDLDWRAVFLISVLLGTLILALIPFIPESSTPDRA GLDWIGAGLAAAGLLMLVYPLVQGQRQGWPAGLVVSLLLSAPVLVLFAWYERRLLRRGRL PFMNVDLFRHKVFTLGILVVLLLMSSQGAFFLVAAYMLQLGLHFSALQAGLVIGSMGMGY FLASLFSSRVAAKLGAHVLTVGSILTTAGYLLLSWAVRTTGVSSDIGVWIPALAVLGIGQ GFVAAPLTNIVLAKIRTTDIGSASGVMTTSIQIASTIGIALIGIVWLSALGAHTDSISAY PDAFNICLYVLAAATALILPLALMLARRTGARRS >gi|333603384|gb|AFDH01000135.1| GENE 2 1263 - 1736 275 157 aa, chain + ## HITS:1 COG:CAC0763 KEGG:ns NR:ns ## COG: CAC0763 COG1846 # Protein_GI_number: 15894050 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Clostridium acetobutylicum # 1 157 1 157 157 198 75.0 4e-51 MNKEEQVVMGFRDLFNKLVWLNKGKMEKSLKGYKPSEVHCIEYIERNVDSNVTKLAESFY MTRGAISKITKQLLKKGLIESYRKPDNKKEIYFRLTEQGKVIYKIHEDLHKEFQERDKAV FEQVTEEQFDSMLSFVEKYSRHLEAEIKKRGLDIKAE Prediction of potential genes in microbial genomes Time: Sun Jul 17 10:57:09 2011 Seq name: gi|333603211|gb|AFDH01000136.1| Paenibacillus sp. HGF7 contig00008, whole genome shotgun sequence Length of sequence - 38767 bp Number of predicted genes - 43, with homology - 41 Number of transcription units - 5, operones - 4 average op.length - 10.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 5/0.000 - CDS 3 - 966 851 ## COG2176 DNA polymerase III, alpha subunit (gram-positive type) - Term 1022 - 1070 5.8 2 1 Op 2 7/0.000 - CDS 1084 - 2532 1316 ## COG0442 Prolyl-tRNA synthetase 3 1 Op 3 17/0.000 - CDS 2642 - 3892 1095 ## COG0750 Predicted membrane-associated Zn-dependent proteases 1 - Prom 3953 - 4012 6.6 - Term 4031 - 4071 4.1 4 2 Op 1 15/0.000 - CDS 4092 - 5237 945 ## COG0743 1-deoxy-D-xylulose 5-phosphate reductoisomerase 5 2 Op 2 32/0.000 - CDS 5295 - 6092 777 ## COG0575 CDP-diglyceride synthetase 6 2 Op 3 19/0.000 - CDS 6117 - 6887 565 ## COG0020 Undecaprenyl pyrophosphate synthase - Term 6907 - 6936 -0.5 7 2 Op 4 33/0.000 - CDS 6951 - 7505 642 ## COG0233 Ribosome recycling factor 8 2 Op 5 24/0.000 - CDS 7510 - 8235 632 ## COG0528 Uridylate kinase - Term 8294 - 8324 2.0 9 2 Op 6 38/0.000 - CDS 8344 - 9000 256 ## PROTEIN SUPPORTED gi|42631241|ref|ZP_00156779.1| COG0264: Translation elongation factor Ts - Prom 9021 - 9080 4.0 10 2 Op 7 . - CDS 9102 - 9800 1119 ## PROTEIN SUPPORTED gi|169191065|ref|ZP_02850938.1| ribosomal protein S2 - Prom 9935 - 9994 5.7 - Term 10051 - 10086 2.0 11 3 Op 1 . - CDS 10093 - 10605 535 ## gi|322382361|ref|ZP_08056268.1| hypothetical protein PL1_2641 12 3 Op 2 . - CDS 10592 - 11233 468 ## PPE_01915 hypothetical protein 13 3 Op 3 . - CDS 11265 - 11585 260 ## 14 3 Op 4 2/0.000 - CDS 11637 - 13049 1385 ## COG1315 Predicted polymerase, most proteins contain PALM domain, HD hydrolase domain and Zn-ribbon domain 15 3 Op 5 . - CDS 13079 - 13861 810 ## COG1191 DNA-directed RNA polymerase specialized sigma subunit 16 3 Op 6 . - CDS 13877 - 14293 254 ## PPSC2_c2116 protein 17 3 Op 7 8/0.000 - CDS 14296 - 14790 407 ## COG1871 Chemotaxis protein; stimulates methylation of MCP proteins 18 3 Op 8 1/0.000 - CDS 14768 - 15406 642 ## COG1776 Chemotaxis protein CheC, inhibitor of MCP methylation 19 3 Op 9 20/0.000 - CDS 15411 - 15872 525 ## COG0835 Chemotaxis signal transduction protein 20 3 Op 10 12/0.000 - CDS 15896 - 17968 2061 ## COG0643 Chemotaxis protein histidine kinase and related kinases 21 3 Op 11 2/0.000 - CDS 18005 - 19168 714 ## COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain 22 3 Op 12 12/0.000 - CDS 19205 - 20101 832 ## COG0455 ATPases involved in chromosome partitioning 23 3 Op 13 10/0.000 - CDS 20094 - 21869 1481 ## COG1419 Flagellar GTP-binding protein 24 3 Op 14 13/0.000 - CDS 21866 - 23899 2260 ## COG1298 Flagellar biosynthesis pathway, component FlhA 25 3 Op 15 10/0.000 - CDS 23915 - 25012 1000 ## COG1377 Flagellar biosynthesis pathway, component FlhB 26 3 Op 16 17/0.000 - CDS 25041 - 25733 831 ## COG1684 Flagellar biosynthesis pathway, component FliR 27 3 Op 17 16/0.000 - CDS 25845 - 26114 373 ## COG1987 Flagellar biosynthesis pathway, component FliQ 28 3 Op 18 6/0.000 - CDS 26140 - 26916 824 ## COG1338 Flagellar biosynthesis pathway, component FliP 29 3 Op 19 2/0.000 - CDS 26903 - 27547 531 ## COG3190 Flagellar biogenesis protein 30 3 Op 20 4/0.000 - CDS 27582 - 27944 483 ## COG0784 FOG: CheY-like receiver 31 3 Op 21 9/0.000 - CDS 27971 - 29254 1089 ## COG1776 Chemotaxis protein CheC, inhibitor of MCP methylation 32 3 Op 22 . - CDS 29244 - 30242 821 ## COG1868 Flagellar motor switch protein 33 3 Op 23 . - CDS 30284 - 30706 293 ## PPSC2_c2099 flagellar basal body-associated protein FliL 34 3 Op 24 . - CDS 30730 - 30933 235 ## 35 3 Op 25 . - CDS 31014 - 31844 748 ## COG4786 Flagellar basal body rod protein 36 4 Tu 1 . - CDS 31966 - 32187 217 ## GYMC10_4183 flagellar operon protein 37 5 Op 1 . - CDS 32337 - 32798 489 ## COG1843 Flagellar hook capping protein 38 5 Op 2 . - CDS 32843 - 34240 998 ## GYMC10_4185 flagellar hook-length control protein 39 5 Op 3 . - CDS 34271 - 35173 969 ## COG3334 Uncharacterized conserved protein 40 5 Op 4 . - CDS 35198 - 35644 438 ## GYMC10_4187 flagellar export protein FliJ 41 5 Op 5 13/0.000 - CDS 35652 - 36977 1064 ## COG1157 Flagellar biosynthesis/type III secretory pathway ATPase 42 5 Op 6 15/0.000 - CDS 36974 - 37807 705 ## COG1317 Flagellar biosynthesis/type III secretory pathway protein 43 5 Op 7 . - CDS 37800 - 38717 683 ## COG1536 Flagellar motor switch protein Predicted protein(s) >gi|333603211|gb|AFDH01000136.1| GENE 1 3 - 966 851 321 aa, chain - ## HITS:1 COG:BH2418 KEGG:ns NR:ns ## COG: BH2418 COG2176 # Protein_GI_number: 15614981 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit (gram-positive type) # Organism: Bacillus halodurans # 7 319 8 317 1433 181 33.0 1e-45 MSQTPDKRQRFELLMKQADIPHEMSTVHFADGYIDKVEISRKNREWTFHLVKQELVPQDV YRSFCRNVQEKFAHIAKTRFVIHMENAEPGRLVEEYWSLFLEWVQREAVTVNGWLSKAKT EVQGNQLTLILLDQIGFELAKKKNMDNWVKSFFQDYFKTEFTVKYALNEKSTEEFERFAQ QIVEEEKLVTQEIMQSIEQELQASAIPDADVRLMVGYDIKDAPVPIQDIVEEEKKVTIQG AVFNLEVKELRNGSTLYSFNVTDYTDSIMLKSFGKTKEDVRILNLLSNGCWIRARGRVEY DRFMMVPELVMIPSDINEVLP >gi|333603211|gb|AFDH01000136.1| GENE 2 1084 - 2532 1316 482 aa, chain - ## HITS:1 COG:ML1553 KEGG:ns NR:ns ## COG: ML1553 COG0442 # Protein_GI_number: 15827816 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Prolyl-tRNA synthetase # Organism: Mycobacterium leprae # 9 482 6 480 480 496 51.0 1e-140 MSKDKQFVREITPQGEDFSQWYIDVIKKADLMSYSPVRGCMVFKPDGYEIWENIQRELDK RFKETGHRNAYFPLFIPESFFQKEKEHVEGFNPELPWVTEAGGEKLEERLAIRPTSETMI GHMYAEWINSYRDLPLLINQWANVVRWEKRTLPFLRTTEFLWQEGHTAHEDEEDARRETM QMLEIYRDFAENFLAMPVIIGQKTPSEKFAGAVDTFSIEAMMKDGKAVQAGTSHYLGTNF AVAFDIKYLNRENQHQFVHTTSWGVSTRLIGATIMAHGDDRGLALPPKVAPTQVIMIPIG PPKTREQVVARTDELFDELKQAGVRVRVDDRADLSPGWKFNEYEMRGVPIRVELGPRDME NGQIVLVSRITGEKKIVQQVNFVQEVQQLLEEIHQEMFNRAKQHLEEHLIAVDTLDEFKQ YLETNRGFALAGWCGSEACEAQVKEEAGATSRNIPFSPRESKETCLVCGDKAKHTVVFGK SY >gi|333603211|gb|AFDH01000136.1| GENE 3 2642 - 3892 1095 416 aa, chain - ## HITS:1 COG:BH2420 KEGG:ns NR:ns ## COG: BH2420 COG0750 # Protein_GI_number: 15614983 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted membrane-associated Zn-dependent proteases 1 # Organism: Bacillus halodurans # 4 413 1 418 420 340 46.0 2e-93 MGSIETGLKIVLMFFVLVTIHEWGHFYFAKRAGILVREFAIGFGPKLFSYKKGETRYTLR LLPFGGYVRMAGEDPEIVQIQDGQTIAVKLNKDNQVTKLYLDQLDQRANVIQGAVQQIDL EKDLFVKLEVGDEQVRYPVQPDALMVTRGVETQIAPLDRQFGSKTVGQRFLSILMGPVMN FLLAAVLFLTLVIMQGVPTNVKVDKLEPGRPSEKAGLMAGDIIVSVNQETIGDNREKFMK VVGSSPNQKMNWVIQRSGVEKKIEITPDENGKVGVYITGDKRSASFGETLKGTYNYVSTS TVGILDGFKKLVLGQFKMDDLGGPVRIVQVTGEFASHGSESYIYWVALLSLYLGLFNLLP FPALDGSRLVFLAIEAVRGKPVDPNRESMVHFIGFAMLMLLMVAVTYNDILRLIKS >gi|333603211|gb|AFDH01000136.1| GENE 4 4092 - 5237 945 381 aa, chain - ## HITS:1 COG:BH2421 KEGG:ns NR:ns ## COG: BH2421 COG0743 # Protein_GI_number: 15614984 # Func_class: I Lipid transport and metabolism # Function: 1-deoxy-D-xylulose 5-phosphate reductoisomerase # Organism: Bacillus halodurans # 19 374 1 357 365 443 61.0 1e-124 MNKRIAILGSTGSIGTQTLDVIAHHPDQFTVEALAGGRNVELLAEQIRRFKPKLASVATR ELADRLSALVPAGTRILFGEEGLLETAAGTDADFVVTAVVGNQGLEPTIAAIEAGKTIGL ANKEPLVSAGHLVTEAAKRKGVRLLPIDSEHSAIFQCLNGERREEIRKITITASGGSFRD RSRAELEGVTVEQALNHPNWSMGAKITIDSATMVNKGLEVMEAHWLFDLPYDQIGVLLHP ESIIHSYVEFKDSSIIAQLGNPDMRVPIQYALSYPNRLLSPAKSLDLAEIATLNFRPMDF DRFPCLRMAYESGRTGGTAPTVFNAANEQAVAKFLQGEIPFLRIETIIEECLQRHSVMSS PQIGDILEADRWARETASLLG >gi|333603211|gb|AFDH01000136.1| GENE 5 5295 - 6092 777 265 aa, chain - ## HITS:1 COG:BH2422 KEGG:ns NR:ns ## COG: BH2422 COG0575 # Protein_GI_number: 15614985 # Func_class: I Lipid transport and metabolism # Function: CDP-diglyceride synthetase # Organism: Bacillus halodurans # 1 263 1 264 264 178 41.0 1e-44 MKQRILTGAIAGAGFLGLLAVGGNWFAALIVLMAIIGFDEYVRMNKLKDHRITWLVGMIA LILLTLPWEMHRFTYELNEVGLIWGAAFVLMAATVLSKNKITIDMVSLLFLGVVYIGVGF HYMIMTRWIPEHGLFWTLLIFVCIWATDSGAYFVGSKFGKHLLWPVISPKKSVEGALGGV LIAIVAGLCFSLARPELLSPARAVLIGVVIAVSGQLGDLMQSAYKRVKGIKDTGTILPGH GGILDRVDSWLIVFPLVHWLALIPS >gi|333603211|gb|AFDH01000136.1| GENE 6 6117 - 6887 565 256 aa, chain - ## HITS:1 COG:BS_yluA KEGG:ns NR:ns ## COG: BS_yluA COG0020 # Protein_GI_number: 16078716 # Func_class: I Lipid transport and metabolism # Function: Undecaprenyl pyrophosphate synthase # Organism: Bacillus subtilis # 1 256 1 260 260 301 55.0 9e-82 MFNQLKKWLGNESAQDEKSPHLELDNVPSHIAIIMDGNGRWAKQRGLPRVAGHHSGMKNV KKITIAADSIGVKVLTMYAFSTENWKRPKEEVEFLMKLPQEFFPLEIEELIERNVRIRMT GWKESLPDYTLNAIEDAIERTKNNTGLILNFALNYGGRKELLAGVQDVLRDVQEGKLRPE ELSEETFSSYMLTSGLPDPDLLIRTSGELRLSNFLLWQLAYSELWFTEAYWPEFSEEHFY RAVAEYQRRARRYGGL >gi|333603211|gb|AFDH01000136.1| GENE 7 6951 - 7505 642 184 aa, chain - ## HITS:1 COG:BH2424 KEGG:ns NR:ns ## COG: BH2424 COG0233 # Protein_GI_number: 15614987 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome recycling factor # Organism: Bacillus halodurans # 1 184 1 185 185 197 63.0 9e-51 MPQSIKKNAEERMSKAIDALKRDLATLRAGRANPALLDKIQVEYYGAMTPVNQLANISTP DSRTLIIQPWDKSSMGAIEKAILKSELGLTPANDGTVIRLVIPPLTEERRSELVKLTRKY GEEAKVAIRNIRRDANDDIKKQEKNGISEDESRRHQDDIQKFTDKFTAEVEKVLTGKEKE IMEV >gi|333603211|gb|AFDH01000136.1| GENE 8 7510 - 8235 632 241 aa, chain - ## HITS:1 COG:lin1350 KEGG:ns NR:ns ## COG: lin1350 COG0528 # Protein_GI_number: 16800418 # Func_class: F Nucleotide transport and metabolism # Function: Uridylate kinase # Organism: Listeria innocua # 1 239 1 240 242 338 74.0 7e-93 MERPLYKRVILKLSGEALAGQQGFGIESDIISSIALQVKDVVDLGVEVAIVVGGGNIWRG IAGSAKGIDRATADYMGMLATVMNSLAMQDALENIGVPTRVQSSISMQQVAEPYIRRRAI RHLEKGRVVIFAAGTGNPYFSTDTTAALRAAEIEAEVILMAKNKVDGVYSADPFKDETAE KYETLTYLEVLNKNLGVMDSTASSLCMDNNIPLIVFSITENGNIKRVVLGEKIGTIVKGS V >gi|333603211|gb|AFDH01000136.1| GENE 9 8344 - 9000 256 218 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42631241|ref|ZP_00156779.1| COG0264: Translation elongation factor Ts [Haemophilus influenzae R2866] # 31 218 105 283 283 103 34 2e-21 MAVTAAMVKELREKTGAGMLDCKKALDEANGDLTKASEILREKGLAAAASKAGRAATEGV VESYIHAGGRIGVLVEVNCETDFVAKTDNFRDFVKGIAMQIAAANPSYVRREEVPTEELD KEKEILRNQALNEGKPAHIVDKMVEGRISKYYEEICLMEQSYIKDPDKTVSVLLNEMIST IGENISIRRFARFELGEGLEKKVDNFVEEVMAQAKGNA >gi|333603211|gb|AFDH01000136.1| GENE 10 9102 - 9800 1119 232 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169191065|ref|ZP_02850938.1| ribosomal protein S2 [Paenibacillus sp. JDR-2] # 1 232 1 232 232 435 92 1e-121 MAVISMKQLLEAGVHFGHQTRRWNPKMDKYIFTERNGIYIIDLQKTVKKVEEAYNFVKSV SAENGTIMFVGTKKQAQDSVKEEAERCGMFYINQRWLGGTLTNFQTIQKRINRLKELEKM EQDGTFELLPKKEVIILNKEKDRLDKFLGGIKGMKGLPSALFIIDPRKERIAVAEARKLG IPIVGIVDTNCDPDEIDYVIPGNDDAIRAVKLLTGKMADAVIEANQGEQTTA >gi|333603211|gb|AFDH01000136.1| GENE 11 10093 - 10605 535 170 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|322382361|ref|ZP_08056268.1| ## NR: gi|322382361|ref|ZP_08056268.1| hypothetical protein PL1_2641 [Paenibacillus larvae subsp. larvae B-3650] hypothetical protein PL1_2641 [Paenibacillus larvae subsp. larvae B-3650] # 1 169 1 163 163 106 40.0 6e-22 MKVNKTLLAGIGIGMIAGSALLQLMISAAQPVQPLSQNSAVSIEQMDMNKLKTEAGKYYQ VFDKNQPVFTKEQHEQELQKQLEAEKAKPPSAQPAPSAQPQITAVYIAPGMKSSQVAKIV SVSGLVESQEQFEQAMAAKAATGKIKSGVHKFTGKPTLDEIIQNLTSKPE >gi|333603211|gb|AFDH01000136.1| GENE 12 10592 - 11233 468 213 aa, chain - ## HITS:1 COG:no KEGG:PPE_01915 NR:ns ## KEGG: PPE_01915 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 2 206 3 207 210 80 30.0 3e-14 MEPWQMIVLLGLVIVVFAGVIPRSAAKRGGQGPSAQLVKELEESMAHFASDLELQNQALI DLFKETQREHKLEVAKLTARLEVLERRSMDGSGAAVQAGRQSAPDLSRQGSRSTEPHVYA EPAVQTHGSALPTPRLTQTEEFAAADAAASVQSQEAPRTEPELSVRARYAALFELHDQGR STEQIAKQLGMNKGEVMLIMQLAKREGHSDESK >gi|333603211|gb|AFDH01000136.1| GENE 13 11265 - 11585 260 106 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MDMKPVDLQFAVHKNDQAGIRQQQLNHKPEMDQVLLGAENEKNAEHNRKASEKIGESEEA QIRKEGRQNGGQGGRGRQQKKAPPSQEAEPPKAVHPFKGSHIDLSL >gi|333603211|gb|AFDH01000136.1| GENE 14 11637 - 13049 1385 470 aa, chain - ## HITS:1 COG:BH2430 KEGG:ns NR:ns ## COG: BH2430 COG1315 # Protein_GI_number: 15614993 # Func_class: L Replication, recombination and repair # Function: Predicted polymerase, most proteins contain PALM domain, HD hydrolase domain and Zn-ribbon domain # Organism: Bacillus halodurans # 6 466 3 459 460 241 32.0 3e-63 MDRILELDQIIRISVTDDKLTSLLKFADVGDDFTVTFDELQGLARANSIVHGLDTEALLR IAIDPQPYLLAETVIAQGTRPVNGTDGYVDYLYGRNNDTHKPVETEDGRVDLKEVSTLNN IRKGQIIGKKVPPTEGTPGKAVTGESLPAREGKEARFKLGKNVVTDNEENAIYAAIDGLV TYTDRNKVNVFPVYEVNGDVDYRTGNIDFVGTVVIRGNVSPGFKIKASGDIRIVGGVEAA ELEASGSVEITAGIVGRNKAVIRAGKNVKSSFIQDATVEAADTITVSQSILHSTIRAGKT VACNGPKGLIVGGTVQAGEKVIARTIGNSLSNATAIEVGVLPELRNELIQLRSQLKALAD NQSKTDKALILLDQLAASGQLGPDKVALRIKLNHTKRQAGEEQRELRERIFEMEKSLEDS ERSSVEVISTVYGGAKIVIGRYTKFIKDPMSHVVFQLVAGDIGHSAYMPK >gi|333603211|gb|AFDH01000136.1| GENE 15 13079 - 13861 810 260 aa, chain - ## HITS:1 COG:BS_sigD KEGG:ns NR:ns ## COG: BS_sigD COG1191 # Protein_GI_number: 16078710 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit # Organism: Bacillus subtilis # 14 252 12 251 254 208 47.0 7e-54 MIDKKPNLAHFDTWRQWKQGGSREAKQTLIETYLPLVEYVSGRLAIGLPKNVSKEDLGSF GIMGLIDAVEKFDYERGLQFETYASWRIRGAIIDGLRQGDWVPRSVREKAKKIEEAYQKL EQKYLRTVTDEEISDYLQVTEDEFQHMLQEIAVTSICSIDEPIREEESETRLSLLVDERA KNPEFTVNEFYLKETLARAIEKLTEKERIVVSLFYFEELSLSEIAEVMSLSPSRISQLHS KAMLRLRGVLSRYKVQLFEK >gi|333603211|gb|AFDH01000136.1| GENE 16 13877 - 14293 254 138 aa, chain - ## HITS:1 COG:no KEGG:PPSC2_c2116 NR:ns ## KEGG: PPSC2_c2116 # Name: not_defined # Def: protein # Organism: P.polymyxa_SC2 # Pathway: not_defined # 3 138 4 137 137 78 33.0 1e-13 MAGTIRWNFIVGAVSFVLTFLLSLGSNVWLTTLLRSVYSFVILFAVTFGFRFIMGLLLSA KSPAVNETAAAAAEGPSPNKNLGQHLDLTTPDETAQKTADGVDREEAEFAPLLPTKLVTR KQPDTEQSVRALRQMSEE >gi|333603211|gb|AFDH01000136.1| GENE 17 14296 - 14790 407 164 aa, chain - ## HITS:1 COG:BH2433 KEGG:ns NR:ns ## COG: BH2433 COG1871 # Protein_GI_number: 15614996 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Chemotaxis protein; stimulates methylation of MCP proteins # Organism: Bacillus halodurans # 6 164 4 162 162 158 51.0 4e-39 MNQQTIIKVGMADLNVGMPGGVLKTTGLGSCVGLTLFDDFAKVGGMAHVMLPTSEIAREG TVNIAKYADTAIPELIDRMTRLGASINRMEAKLAGGAQMFAFAGGGDTMRIGPRNVEACK EMLVRYKIRVKGEDTGQNYGRTIELNCDTGVLTIRSVQHGLKDL >gi|333603211|gb|AFDH01000136.1| GENE 18 14768 - 15406 642 212 aa, chain - ## HITS:1 COG:BH2434 KEGG:ns NR:ns ## COG: BH2434 COG1776 # Protein_GI_number: 15614997 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Chemotaxis protein CheC, inhibitor of MCP methylation # Organism: Bacillus halodurans # 1 207 1 209 209 215 55.0 5e-56 MDTFRQLADYQLDVLKEIGNIGAGHAATALSTLLDKPVDMLVPKVMVLPFEEIPEIVGGA EEVVLAIFLRVVGDAPGNMFFILNLESAKRMLFSLIGMELSDSGEYTELEISALNEIGNI LAGSYLSSLADFTRLSMFPTVPSLAIDMAGAILSYGLLQFGEMGDQALLIDTKFLEGNEE VQGNFFLIPDPETFGKLFAALGVEAHESTDDH >gi|333603211|gb|AFDH01000136.1| GENE 19 15411 - 15872 525 153 aa, chain - ## HITS:1 COG:BH2969 KEGG:ns NR:ns ## COG: BH2969 COG0835 # Protein_GI_number: 15615531 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Chemotaxis signal transduction protein # Organism: Bacillus halodurans # 4 144 11 150 155 150 53.0 8e-37 MAEDKKIIVFALAHEEYGVEVDKVKTIERMQPMTRVPKTPAFVKGVINLRGVVVPVIDLR SRFGLPETPYSDNTRVIIVAVNELEVGLIVDSANDVIDLNEDNIENPPEVVGGIKAKYLH GIAKIGEDRLLVLMNLEQVLNRDEVIQLEKIEA >gi|333603211|gb|AFDH01000136.1| GENE 20 15896 - 17968 2061 690 aa, chain - ## HITS:1 COG:BH2970 KEGG:ns NR:ns ## COG: BH2970 COG0643 # Protein_GI_number: 15615532 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Chemotaxis protein histidine kinase and related kinases # Organism: Bacillus halodurans # 1 690 1 682 682 662 54.0 0 MELNQYLSMFIDESKEHLQALNDNMLSLENSPDNIDIVHNIFRSAHTLKGMSATMGFEDL ASLTHEMENVLDLVRNLKLKMDPFIFDSLFQSLDALDSMVEDIVQGGTGKADVTAIVTAL KSIVSGDYLKSAPSAGGAGAEGKEESVIALDQFQLSVLQQSIDANMQVFYVEVTVREDCV LKAARAYMVFEILERSGEVIKATPSVQEIEQEKFDRTFSVYYIANVGKADLEKEISNVSE IEHVQIIVLDRETLDEMTGSGAAQAEVRAGEAQAAAAAAPAPAAKAAPAKETGGAAKPAA AAGGGPVGTRTIRVDIERLDSLMNLFSELLIDRVRLEQLASEIKRNELTETVEHMARVSS DLQNIVLKLRMVPVDTVFNRFPRMIRDIAKSLDKKVDLVITGAETELDRTVIDEIGDPLV HLLRNAVDHGLETVTQRVAKGKSESGTVHLRAYHSGNNVFIEIEDNGNGINREKVLATAV KKGIVAPEMADKMSNSDIDQLLFASGFSTADVISDISGRGVGLDVVKTKIHSLGGHIHVE SNPGSGSIFSIKLPLTLSIISAMLVKIGSEKYAIPLSSIVETALIQQAQIRSVQGNRMID FRGSMIPLVSLSSVLDIPDYSEADETETEVVVVRKGEKMAALMVEEFIGQQEIVLKTLGK YFTKLFAISGATILGDGQVALILDTNELIK >gi|333603211|gb|AFDH01000136.1| GENE 21 18005 - 19168 714 387 aa, chain - ## HITS:1 COG:BH2435 KEGG:ns NR:ns ## COG: BH2435 COG2201 # Protein_GI_number: 15614998 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain # Organism: Bacillus halodurans # 5 379 6 343 346 287 44.0 3e-77 MEPYRILVVDDSVFMRKIITDLIEEDPNFRVVAVAKNGAEAVVKTQELKPHAVTMDIEMP EMNGLEALERIMAATPTPVIMLSSLTMSGAVETIRALELGAIDFIRKPSGSISLDLFKVK QLLHEKLRIAVKTRMQPQPRIEPAKRPERFVQPSAPFVRPSAAEIPKRTAAATQETGKPA SGVGTGSSKGFRDLVAIGTSTGGPRALQKVLSGLPADFPAPVLIVQHMPPNFTKSLSQRL NDQCAVRVVEAEEAQVLEPGTAYVAPGGLHMTVVRADDKKYRISLSKSEPVSGHRPSVDK LFQSLLPLKELTRHAVIMTGMGSDGARTIGELRKDGAATTIAESEETCVVYGMPRVAVEN GAAMFVLPLGDIAPKLVERVTDKNGSR >gi|333603211|gb|AFDH01000136.1| GENE 22 19205 - 20101 832 298 aa, chain - ## HITS:1 COG:BH2436 KEGG:ns NR:ns ## COG: BH2436 COG0455 # Protein_GI_number: 15614999 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Bacillus halodurans # 1 279 1 268 288 227 41.0 3e-59 MSDQAQELRKLIRLRHEKDTPSPGSALTGQPERKTRIITVTSGKGGVGKSNFTLNFALCL QARGYKTLIFDADIGFANIDVLMGISSKANLLHLIKGEKTIGELVQTGPKGLQFIAGGSG LYDLVRLSDSEADSFTDQIQELGGMADFILFDTGAGLSKETQRFIAAAQETLVVTTPEPT SITDAYALIKMVRNEDPDVAFKLVVNRAAHSREAKETAEKIAMVARRFLSVELQTLGFVE DDQHVSRAVKEQTPFTIAYPNSPAAKSMNVLVDQFLGQQPKADSTGGFKGFLSRLIGR >gi|333603211|gb|AFDH01000136.1| GENE 23 20094 - 21869 1481 591 aa, chain - ## HITS:1 COG:BH2437 KEGG:ns NR:ns ## COG: BH2437 COG1419 # Protein_GI_number: 15615000 # Func_class: N Cell motility # Function: Flagellar GTP-binding protein # Organism: Bacillus halodurans # 304 585 83 369 375 217 45.0 5e-56 MRVKRYIVDSMPDALHKIRTDLGKDAVILSTKEVKTGGFLGLFGKKRIEVIAALEEGQAG SGKNALEGGAQARPSSKAAAAAAVTAVAKARQEEAEKSADQPRTNKEQELRQREFAELLL RQSALQNEAVPTYGTGAAEELTARETSLLKKEETLHVKTGSETSAVSADGQSSSAVRGAG SDQHEVPGQRSSQPSPAVLDRPSGSPAAEEALPVIPQRPPAAAAAAYAQARPAAAEQRQS LPAQAGPLVPPKAEAPAEPAAAAPQSGGFADEQAEALRAALASSRAEAAAEAAAAQSAAR EDLMLAELQHLKTMMAGLARPSAQPQLPPVWGRLEEHLLAQEVQPDLVRQLIESARRDLA ASADEAEARQAAEAVRKRMLALFPPPQGKPISADSKIVHIVGPTGVGKTTTIAKLAADQV LKQRRKVGLITSDTYRIAAIEQLRTYANILDVPVEVVFSPADLTRALHNLREADVIFMDT AGRNFRNEMYVSELNTLIRHQGPSETVLVLSLTSKYSDMKAITANFSKFKVDKVLFTKMD ETYSYGAMLNLLDEFPIRLSYVTDGQNVPDDIMVADENRIVDAVLEGYSYE >gi|333603211|gb|AFDH01000136.1| GENE 24 21866 - 23899 2260 677 aa, chain - ## HITS:1 COG:BH2438 KEGG:ns NR:ns ## COG: BH2438 COG1298 # Protein_GI_number: 15615001 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar biosynthesis pathway, component FlhA # Organism: Bacillus halodurans # 1 676 1 675 677 774 64.0 0 MKPKDLVVLIGVIGIILMMVVPIPTALLDFLLIINITISLMIILVGMNTQEALQFSIFPA LLLVTTLFRLALNVSTARNILAHAEAGAVVETFGNFVAAGNIVVGFIVFLILVIVQFIVI TKGSERVAEVAARFTLDAMPGKQMSIDADLNAGMINEQQARERRRKVEREADFYGAMDGA SKFVKGDAIAGIIILLINLVGGLIIGISMKGMSFGEAGHTYSILTIGDGLVSQIPALLIS TASGIIVTRASSEGTFSNDIVGQLTAYPKLLYIVAGTIAFLGIFTPIHWYTTIPIAVLLV FAARKMQQNLNRKQVEEEQMVEEQQIEEVRSPESVISLLQVDPIEFEFGYGLIPLADAQQ GGDLLDRIILIRRQCALELGIVVPVIRIRDNIQLRPNEYIIKIKGNTVAGGELLLNHYLA MSPGFEDESVTGIETTEPAFGLPALWIDEMTKERAELSGYTVVDPPSVVATHLTEIIKKH AHELLGRQETKTLIDNVREAYPALVDDLIPNVLSIGDVQKVLVKLLREKISVRDLVTILE TLADYGPYSKDPDILTEYVRQSLSRQITLQYSSPQDSLRVITVGPGLEKKIADSVQQTDQ GSYLAIDPSSSQVIYHKLGEQVSKMVQSGHQPVILASPTIRMYLRQLLERTMQDIPVLSY SELEPSVEIQSMGVVNL >gi|333603211|gb|AFDH01000136.1| GENE 25 23915 - 25012 1000 365 aa, chain - ## HITS:1 COG:BS_flhB KEGG:ns NR:ns ## COG: BS_flhB COG1377 # Protein_GI_number: 16078701 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar biosynthesis pathway, component FlhB # Organism: Bacillus subtilis # 4 362 1 359 360 360 51.0 2e-99 MEPLRLKLDLQLFSQEKTEPATPKKRQDARKKGQVAKSMELPAAFILFFSFLSFYMIGGF MKERLMDLFSGTLRHDLLMDVTMANVRMLFYRLLIHFLVMLAPIMILTMVIALAGNYLQI GILFTGDPLKMKLSKLNPIEGFKKIFSMRSAVDFLKSMLKMSVIGIVVYMTLWDEKTQLL SLSHVPLEKSLHYIWSLTLMLGMKIALILVVLALFDYLYQKYEFEKSIRMSKQDIKDEYK KMEGDPLIKGKIREKQRRMAMQRMMQEIPTADVIITNPTHFAVAIRYDSANMQAPKVVAK GTDHVALKIREIAKEHGIMIMENKPLARALYAQVDLEESIPGDLFQAVAEVLAYVYKIKG KVKNA >gi|333603211|gb|AFDH01000136.1| GENE 26 25041 - 25733 831 230 aa, chain - ## HITS:1 COG:BS_fliR KEGG:ns NR:ns ## COG: BS_fliR COG1684 # Protein_GI_number: 16078700 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar biosynthesis pathway, component FliR # Organism: Bacillus subtilis # 3 223 38 257 259 153 41.0 2e-37 MFKIGLALFLTLIVTAAQGTSQLVPMDAQYVLLVIREIIVGLLLGFIAYLFFTAVQIAGS FIDMQIGLGMANVIDPMSGTTVPLMGNLKYMLAMLLLLSFNGHHFMLQGIMNSYEWIPLS NNLFAQLYGGQITEFLVKTFSSVFSLSMQLAAPVVAAMFLTDLGLGLLTRVAPQFNIFVV GVPLKIIIGFFLIALLMPELIGLFHQLFDRMFEAMQKLLNLVAGKALETP >gi|333603211|gb|AFDH01000136.1| GENE 27 25845 - 26114 373 89 aa, chain - ## HITS:1 COG:BS_fliQ KEGG:ns NR:ns ## COG: BS_fliQ COG1987 # Protein_GI_number: 16078699 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar biosynthesis pathway, component FliQ # Organism: Bacillus subtilis # 1 89 1 89 89 90 64.0 6e-19 MSSQFIIKLAGEAVYTVLKASAPMLVIALAVGLIISIFQATTQIQEQTLAFVPKIVAVLL SVLIFGPWILNTLVDFTFNLFNNLHQYIG >gi|333603211|gb|AFDH01000136.1| GENE 28 26140 - 26916 824 258 aa, chain - ## HITS:1 COG:BS_fliP KEGG:ns NR:ns ## COG: BS_fliP COG1338 # Protein_GI_number: 16078698 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar biosynthesis pathway, component FliP # Organism: Bacillus subtilis # 41 256 6 221 221 250 68.0 2e-66 MSKNKGTLIILLALLVFMGWAGNTAYAAPDPQNPIPGISFNVDSGSGASGASSTISVILL LTVLSLAPSFLILMTSFTRIVIVLGFVRTSLGTQQMPPNQVLIGLALFLTLFIMAPTLGQ INDTAVQPYMKGELNQTQALQKASVPIKQFMWNHTRPKDLKLFLDYTKAEAPKGVEDTPL TALVPAYAISELKTAFQMGFMIFIPFLVIDMVIASTLMAMGMMMLPPVMISLPFKILLFI LVDGWYLVVKSLLLSYST >gi|333603211|gb|AFDH01000136.1| GENE 29 26903 - 27547 531 214 aa, chain - ## HITS:1 COG:BH2443 KEGG:ns NR:ns ## COG: BH2443 COG3190 # Protein_GI_number: 15615006 # Func_class: N Cell motility # Function: Flagellar biogenesis protein # Organism: Bacillus halodurans # 58 204 71 227 228 80 30.0 3e-15 MKKQAGKLLLATAGLIVQLPFWTSVCFGAPELGDNTGPGSGTGETGSIDSIVMIGKVIFF LLLIIGLFYGIMKMLSKKSGFRFGRAMQSLGGVPLGQNKSIQVVEIGDSLYIVGVGDNIQ LLEKIADAGEAARLKEQITAQTRAATEFITVGKWLEKIRKKPGENNVVEEEELSPNFHQV FQDKLQNVAQRNKSVEEWLQEENEQDRLKSNEQK >gi|333603211|gb|AFDH01000136.1| GENE 30 27582 - 27944 483 120 aa, chain - ## HITS:1 COG:BH2444 KEGG:ns NR:ns ## COG: BH2444 COG0784 # Protein_GI_number: 15615007 # Func_class: T Signal transduction mechanisms # Function: FOG: CheY-like receiver # Organism: Bacillus halodurans # 1 120 1 120 121 178 85.0 2e-45 MGNRILIVDDAAFMRMMIRDILTKNGYEVVGEGNDGVQAVEKFKELRPDLVTMDITMPEM DGINALKEIKKIDPNAKVIMCSAMGQQAMVIDAIQAGAKDFIVKPFQADRVIEAIKKTMG >gi|333603211|gb|AFDH01000136.1| GENE 31 27971 - 29254 1089 427 aa, chain - ## HITS:1 COG:BH2445_1 KEGG:ns NR:ns ## COG: BH2445_1 COG1776 # Protein_GI_number: 15615008 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Chemotaxis protein CheC, inhibitor of MCP methylation # Organism: Bacillus halodurans # 5 296 4 289 289 259 51.0 9e-69 MTSKDYLSQEEIDALLKQAVDERSDDNPSSSHSSNIDDYLSSLEQDALGEIGNITFGSAA TALSTLLGKKVDITTPKVSCIPRVQLVNEFPKPHVAVHVNYVDGFDGINLLVIKTRDAQV IADLMMGGDGHVEGDELSEIHVSAVQEAMNQMMGSSATSMSTIFNRFVNISPPGIDILNL SNGEGKLPNEDVFIKISFRLTIGDLIDSTIMQLLPVDFSKEMVHILMGGGSEEVYEETAA AVSEEVPPAVTNQVQADTNAQAYQQPVPEPPYTNPAEAPYTNPSMGGNPMPMNQPPAQQS YAQQPMNHAPQGGNYGGMNRNVNVQPVQFSNLQQGGYNQTDDTNLNLLLDIPLKVTVELG RTQKVIKDILELSQGSIIELDKLAGEPVDILVNNKLIAKGEVVVIDENFGVRVTDIVSQW DRIQKIQ >gi|333603211|gb|AFDH01000136.1| GENE 32 29244 - 30242 821 332 aa, chain - ## HITS:1 COG:BH2446 KEGG:ns NR:ns ## COG: BH2446 COG1868 # Protein_GI_number: 15615009 # Func_class: N Cell motility # Function: Flagellar motor switch protein # Organism: Bacillus halodurans # 1 329 1 329 330 397 62.0 1e-110 MVDVMSQNEIDALLAALSSGEMDAEELKKEDTQRKVRLYDFKRAVRFSKDHIRSLTRIHE NFARYLTTYFSAQLRTFVQINVVQVEQLPYDEFIRSIPKMTILNIFEAEPLEGRMVLEVH PNVAYAMLDRLLGGVGVSPQKIAALTEIETIVMERIFSRAFESLQEAWKTIIDLSPRLEA LETNPQFMQIVSPNETIALISLSTKIGDTTGMINLCIPHVVIEPIMPRLSVHHWFVSQKK SRAPEEVEILQDRLTQAKLPIIAELGESQITIHEFLNLQSGDVITLNKPVNEPLHIKVGE KLKFTGSAGTTKSKMAVQIGEIVNEGAEEHDE >gi|333603211|gb|AFDH01000136.1| GENE 33 30284 - 30706 293 140 aa, chain - ## HITS:1 COG:no KEGG:PPSC2_c2099 NR:ns ## KEGG: PPSC2_c2099 # Name: not_defined # Def: flagellar basal body-associated protein FliL # Organism: P.polymyxa_SC2 # Pathway: not_defined # 2 139 8 154 157 72 36.0 5e-12 MLVSILVAITLVLTAAFVLWTVMDNKSESAGEEKAQTSAEIKENTVIMKDITTNLASQGS FVKISLAFELENKKAKTDFENLIDSRIKGTIIRTLSDMNSDQISGSKGQDNLTNTLISKL NPLLNEGKIRRINITDIVLE >gi|333603211|gb|AFDH01000136.1| GENE 34 30730 - 30933 235 67 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNGKPLVINALMIEMMEETPDTVITLINGKKIMVLEQEAVVTEMVEQFLKRIGAVQATIK SANTEGL >gi|333603211|gb|AFDH01000136.1| GENE 35 31014 - 31844 748 276 aa, chain - ## HITS:1 COG:BH2449 KEGG:ns NR:ns ## COG: BH2449 COG4786 # Protein_GI_number: 15615012 # Func_class: N Cell motility # Function: Flagellar basal body rod protein # Organism: Bacillus halodurans # 1 276 1 263 263 254 57.0 1e-67 MLRSMYSGISGMRGFQTKLDVIGNNISNVNTVGFKKGRVMFQDILSQTVAGVTAPDGAGT QGGVNAKQVGLGVGTAAIDTIHTGGSAMTTNVPTDLRIDGNGFFAVGSAAMGDVPTYYTR AGNFTVDADNFIVNPDGLYLLSTAGEPIQLDAAATKFSISQDGKIVQVINGVPEVSDYNI AVVKFANPGGLTKAGGNLYEYSPNAAMEPITDLTEWTPANEATGTGSIIAGQLEMSNVDL TEEFSEMIVSQRGFQANSRIITTSDEILQEIVNLKR >gi|333603211|gb|AFDH01000136.1| GENE 36 31966 - 32187 217 73 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_4183 NR:ns ## KEGG: GYMC10_4183 # Name: not_defined # Def: flagellar operon protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 73 57 129 129 87 57.0 2e-16 MKQRGIQIDNEQLAKLENAIDKAAAKGAKDTLMVLGGTALIVNVPNRTVITALDGAKLQD QVFTQIDSAVIIS >gi|333603211|gb|AFDH01000136.1| GENE 37 32337 - 32798 489 153 aa, chain - ## HITS:1 COG:BH2451 KEGG:ns NR:ns ## COG: BH2451 COG1843 # Protein_GI_number: 15615014 # Func_class: N Cell motility # Function: Flagellar hook capping protein # Organism: Bacillus halodurans # 8 120 1 118 171 86 42.0 2e-17 MAELWGDLTKTGSTTNTASAASKAKEKKDGSILGKDDFLKILITQLQNQDPMQPMQDKEF VAQMAQFTSVEQLSNMASEMKLLRSSLGFTSSLIGKDISWMGKTDSGETVMKNGVVESII VRDGVQYATVDGKEVKLEEVLKIENQKPAVPAP >gi|333603211|gb|AFDH01000136.1| GENE 38 32843 - 34240 998 465 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_4185 NR:ns ## KEGG: GYMC10_4185 # Name: not_defined # Def: flagellar hook-length control protein # Organism: Geobacillus_Y412MC10 # Pathway: Flagellar assembly [PATH:gym02040] # 22 456 17 442 448 93 27.0 2e-17 MEMPVASTPSSTPSAGSTAVKAGTAKTTTAAATLAGNGKSDAGTFQEVMNGQLQKEAGEE NAGSVDSILAGLLQVIPFLPAPVQEALSDMEGQTGTEGMADLLLSTIQSSPELFSKLSQS DAMQQWANDASALLQLLSGTQQTGLQAIQLDSGDASLKLQKTILDLTAMLKQQPDHPLLQ QLSAEFKQLVETALPSLVNQQLAGATGKATAKAAETELTLPTSATDSKLDAAEPVMTVTK TGSVKASLELLAARTGVWNSVRQAAHETVDAVQTSTTPASENEPAANGLTGLQEGMKTTL PEQAAKAAAPTISAQNFAQELSQFMVKRMSLKMGNGFSEAKLSLRPQHLGTIDVVLTMQN GQLVAQFTADTALGKELLESQLAHLRQSLHSQGVQVDKMEVGQNTMSSTMFQDSRQQQSS QQFLQQRGGGGNQDSSEELTEWNEELKILEETRKAALGNSFETSA >gi|333603211|gb|AFDH01000136.1| GENE 39 34271 - 35173 969 300 aa, chain - ## HITS:1 COG:BS_ylxF KEGG:ns NR:ns ## COG: BS_ylxF COG3334 # Protein_GI_number: 16078689 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 12 195 9 193 213 65 29.0 1e-10 MEEAGTESSSGGKLERFLVWFLIPFVFTAVLLGVLLSVFDYDVMKTVQRTLNKIPIVGEM IPLPKEDAQSTPAAKGTEEDAVKTKTKEVEQLNSKVQELKTELDKADQTSAQKDKTILDL KQQKAELEDKELAKQDEEYDKKVRELASVYAKMMPSKAAQIIQNLSPQETILVLNAMKTD ERVKVLEKMDPKKAADASIALKDLTTSQDQKIAALQDRLVLQQKPDSAQKKMTSAELSQT FASMDASKAAKVLSDMYGKNSAQVLTILREMDTSKRAALMGEIAGISKETAASITGNLVP >gi|333603211|gb|AFDH01000136.1| GENE 40 35198 - 35644 438 148 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_4187 NR:ns ## KEGG: GYMC10_4187 # Name: not_defined # Def: flagellar export protein FliJ # Organism: Geobacillus_Y412MC10 # Pathway: Flagellar assembly [PATH:gym02040] # 1 141 1 141 147 110 49.0 2e-23 MKFQYAFQQIVNLKNNERSQAEWNLSTAIGNLNHEESSLQELIRLKNEAQEKMLETSMRP VSMLEIRQLQSYVDHIEHLIARKRHDVSKAQRHVNHNRDLLNDKMVDEKVWTKARDKALE QFTGFVLKKEQEALDEIASNRHIRLSYQ >gi|333603211|gb|AFDH01000136.1| GENE 41 35652 - 36977 1064 441 aa, chain - ## HITS:1 COG:BH2455 KEGG:ns NR:ns ## COG: BH2455 COG1157 # Protein_GI_number: 15615018 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar biosynthesis/type III secretory pathway ATPase # Organism: Bacillus halodurans # 7 441 2 436 437 546 62.0 1e-155 MSQGSPNAGKYVDFLRQLDPVRVNGKVTQVIGLTVESEGPDVSIGELCHIYPHKSNQPLM AEVVGFRGNKVILMPLGELEAIGPGCDVVGTGKPLTVQVGHELLGKVLNGLGQPLDGSFL PSRMAHVSTNNVPSNPLSRPRVQEPLGVGVRAIDGLLTVGKGQRVGIFAGSGVGKSTLLG MIARNTSADVNVIALIGERGREVLEFVEKDLGPEGLARSVVIVATSDQPAMVRIKGAFIA TSIAEYFRDRGMNVMLMMDSVTRFAMAQREVGLAVGEPPATRGYTPSVFALLPKLLERSG TGLKGSITAFYTVLVDGDDMNEPIADAVRGILDGHIVLDRNIANKGQYPAINVLASVSRV MKEIVTQEQLDAASHLKRMLSVYKDSEDLINLGAYQRGSNQEIDISLQYMDEILDFVKQK TNEKVTLEEAQQRLIDHFSLG >gi|333603211|gb|AFDH01000136.1| GENE 42 36974 - 37807 705 277 aa, chain - ## HITS:1 COG:BH2456 KEGG:ns NR:ns ## COG: BH2456 COG1317 # Protein_GI_number: 15615019 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar biosynthesis/type III secretory pathway protein # Organism: Bacillus halodurans # 43 256 41 246 266 82 28.0 7e-16 MSNVLKPFHYAPADETNAYRVPVKPIYTPQAELPEDEPRFTPEEEAQLSEAESLKRHILE DAESFAQTHMQQAIQEVSELKEQTEAEIEAWWMQRREEDEQHQEQARTTGYETGYQEGLN QARQDVSQQYDEMLSEARQVLQQAYQVKQQVIQEAEPFLIELSCSIAEKIISKQLTVSPE WMIETIRSVLVRRKESGTITLCVAPRYFAYIQDAREELLSAIDSQAELEIIPDASVQDEG CVVRSTFGSIDARIDTQLHEIKLALQRIALHGEGDES >gi|333603211|gb|AFDH01000136.1| GENE 43 37800 - 38717 683 305 aa, chain - ## HITS:1 COG:BH2457 KEGG:ns NR:ns ## COG: BH2457 COG1536 # Protein_GI_number: 15615020 # Func_class: N Cell motility # Function: Flagellar motor switch protein # Organism: Bacillus halodurans # 1 305 31 335 335 403 76.0 1e-112 MREDEIEQLTLEIANVRKVDALEKESILSEFHQICRAQEYISQGGIAYAKEILEKALGSN KAVDIINRLTANLQVRPFDFARKADPAQILNFIQNENSQTIALVLSYLQAEQASIILSSL PQEKQADVAKRIALMDSTSPEVISQVERVLEQKLSATVTQDYTSAGGISSIVQILNGVDR GTERTILDSLEIQDPELAEEIKKRMFVFEDIVNVDNRSIQRIVRDIENADLQLALKVASE EVREAIFRNMSKRMAETFKEEMEFMGPVRLRDVEEAQTRIVSTIRRLEESGEIIIARGGG DDIIV Prediction of potential genes in microbial genomes Time: Sun Jul 17 10:57:50 2011 Seq name: gi|333603207|gb|AFDH01000137.1| Paenibacillus sp. HGF7 contig00110, whole genome shotgun sequence Length of sequence - 1167 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 14 - 598 408 ## COG1309 Transcriptional regulator - Prom 689 - 748 5.1 + Prom 612 - 671 6.6 2 2 Tu 1 . + CDS 758 - 1166 297 ## COG0477 Permeases of the major facilitator superfamily Predicted protein(s) >gi|333603207|gb|AFDH01000137.1| GENE 1 14 - 598 408 194 aa, chain - ## HITS:1 COG:all7523 KEGG:ns NR:ns ## COG: all7523 COG1309 # Protein_GI_number: 17158659 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Nostoc sp. PCC 7120 # 2 184 4 186 190 117 33.0 1e-26 MQKESARDRILRVASELFYMEGIRAVGIDRIIKESGVAKASFYRSFATKDDLAVAYLESR DELKVEKLEKLRQLYPNSPKEQLDTLIRDVTEQMGMPDYRGCPFLNAAVEFPDPDHPAHI KLLGIQRSFWSRVLELAREGGARQPEELTAQLRMLYDGFVMKSYLDRTEFDPEYFRKAAE LLLEKQLAPDNQRG >gi|333603207|gb|AFDH01000137.1| GENE 2 758 - 1166 297 136 aa, chain + ## HITS:1 COG:PA1262 KEGG:ns NR:ns ## COG: PA1262 COG0477 # Protein_GI_number: 15596459 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Pseudomonas aeruginosa # 29 136 17 120 480 87 47.0 6e-18 MPNTLSDASAQVARTRDPVSKGDGRRSRLMLPALLLPVFMAVANVFIVNVATPSIQKGLG ASFADVQFMLTGYTLTFAVLLIIGARLGDRFGRRRMLFIGVALFTIASLLCGLSAHVTLL IASRVVQGVGAALFMP Prediction of potential genes in microbial genomes Time: Sun Jul 17 10:59:58 2011 Seq name: gi|333603045|gb|AFDH01000138.1| Paenibacillus sp. HGF7 contig00042, whole genome shotgun sequence Length of sequence - 26015 bp Number of predicted genes - 43, with homology - 43 Number of transcription units - 7, operones - 2 average op.length - 19.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 2 - 61 4.7 1 1 Tu 1 . + CDS 92 - 1282 1478 ## PROTEIN SUPPORTED gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 + Term 1354 - 1395 7.1 + Prom 1524 - 1583 4.6 2 2 Op 1 40/0.000 + CDS 1715 - 2023 495 ## PROTEIN SUPPORTED gi|192813593|ref|ZP_03042253.1| ribosomal protein S10 3 2 Op 2 58/0.000 + CDS 2069 - 2692 892 ## PROTEIN SUPPORTED gi|169190345|ref|ZP_02850317.1| ribosomal protein L3 4 2 Op 3 61/0.000 + CDS 2709 - 3335 918 ## PROTEIN SUPPORTED gi|167463901|ref|ZP_02328990.1| 50S ribosomal protein L4 5 2 Op 4 61/0.000 + CDS 3332 - 3622 427 ## PROTEIN SUPPORTED gi|167463900|ref|ZP_02328989.1| 50S ribosomal protein L23 6 2 Op 5 60/0.000 + CDS 3653 - 4483 1311 ## PROTEIN SUPPORTED gi|192813589|ref|ZP_03042249.1| ribosomal protein L2 7 2 Op 6 59/0.000 + CDS 4532 - 4810 466 ## PROTEIN SUPPORTED gi|169190341|ref|ZP_02850313.1| ribosomal protein S19 8 2 Op 7 61/0.000 + CDS 4841 - 5173 481 ## PROTEIN SUPPORTED gi|167465558|ref|ZP_02330647.1| 50S ribosomal protein L22 9 2 Op 8 50/0.000 + CDS 5187 - 5849 1024 ## PROTEIN SUPPORTED gi|167465559|ref|ZP_02330648.1| 30S ribosomal protein S3 10 2 Op 9 50/0.000 + CDS 5852 - 6286 712 ## PROTEIN SUPPORTED gi|167465560|ref|ZP_02330649.1| 50S ribosomal protein L16 11 2 Op 10 50/0.000 + CDS 6276 - 6473 299 ## PROTEIN SUPPORTED gi|167465561|ref|ZP_02330650.1| 50S ribosomal protein L29 12 2 Op 11 50/0.000 + CDS 6500 - 6763 424 ## PROTEIN SUPPORTED gi|167465562|ref|ZP_02330651.1| 30S ribosomal protein S17 13 2 Op 12 57/0.000 + CDS 6796 - 7164 578 ## PROTEIN SUPPORTED gi|167465563|ref|ZP_02330652.1| 50S ribosomal protein L14 14 2 Op 13 48/0.000 + CDS 7266 - 7619 548 ## PROTEIN SUPPORTED gi|167465564|ref|ZP_02330653.1| 50S ribosomal protein L24 15 2 Op 14 4/0.000 + CDS 7649 - 8191 867 ## PROTEIN SUPPORTED gi|167465565|ref|ZP_02330654.1| 50S ribosomal protein L5 16 2 Op 15 . + CDS 8285 - 8470 311 ## PROTEIN SUPPORTED gi|167465566|ref|ZP_02330655.1| 30S ribosomal protein S14 17 2 Op 16 55/0.000 + CDS 8503 - 8901 623 ## PROTEIN SUPPORTED gi|167465567|ref|ZP_02330656.1| SSU ribosomal protein S8P 18 2 Op 17 46/0.000 + CDS 8931 - 9473 773 ## PROTEIN SUPPORTED gi|169190330|ref|ZP_02850302.1| ribosomal protein L6 19 2 Op 18 56/0.000 + CDS 9526 - 9891 516 ## PROTEIN SUPPORTED gi|167465569|ref|ZP_02330658.1| 50S ribosomal protein L18 20 2 Op 19 50/0.000 + CDS 9920 - 10417 780 ## PROTEIN SUPPORTED gi|169190328|ref|ZP_02850300.1| ribosomal protein S5 21 2 Op 20 48/0.000 + CDS 10429 - 10614 221 ## PROTEIN SUPPORTED gi|192813575|ref|ZP_03042235.1| ribosomal protein L30 22 2 Op 21 53/0.000 + CDS 10646 - 11086 683 ## PROTEIN SUPPORTED gi|167465211|ref|ZP_02330300.1| 50S ribosomal protein L15 23 2 Op 22 28/0.000 + CDS 11086 - 12393 878 ## PROTEIN SUPPORTED gi|163796899|ref|ZP_02190856.1| 30S ribosomal protein S11 + Term 12394 - 12454 1.3 24 2 Op 23 12/0.000 + CDS 12479 - 13132 279 ## COG0563 Adenylate kinase and related kinases 25 2 Op 24 1/0.000 + CDS 13165 - 13881 413 ## COG0024 Methionine aminopeptidase 26 2 Op 25 2/0.000 + CDS 13891 - 14202 142 ## COG2163 Ribosomal protein L14E/L6E/L27E 27 2 Op 26 2/0.000 + CDS 14206 - 14424 293 ## PROTEIN SUPPORTED gi|15900168|ref|NP_344772.1| translation initiation factor IF-1 28 2 Op 27 . + CDS 14513 - 14626 201 ## PROTEIN SUPPORTED gi|56961956|ref|YP_173678.1| 50S ribosomal protein L36 29 2 Op 28 48/0.000 + CDS 14647 - 15015 556 ## PROTEIN SUPPORTED gi|169190319|ref|ZP_02850291.1| ribosomal protein S13 30 2 Op 29 32/0.000 + CDS 15037 - 15432 649 ## PROTEIN SUPPORTED gi|169190318|ref|ZP_02850290.1| ribosomal protein S11 + Prom 15447 - 15506 3.0 31 2 Op 30 50/0.000 + CDS 15555 - 16499 727 ## COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD subunit 32 2 Op 31 4/0.000 + CDS 16524 - 16886 537 ## PROTEIN SUPPORTED gi|192814010|ref|ZP_03042661.1| ribosomal protein L17 33 2 Op 32 7/0.000 + CDS 17010 - 17780 269 ## COG0101 Pseudouridylate synthase + Prom 17872 - 17931 1.9 34 2 Op 33 59/0.000 + CDS 17955 - 18392 646 ## PROTEIN SUPPORTED gi|192814012|ref|ZP_03042663.1| ribosomal protein L13 35 2 Op 34 . + CDS 18413 - 18805 625 ## PROTEIN SUPPORTED gi|192814013|ref|ZP_03042664.1| ribosomal protein S9 + Term 18815 - 18880 17.1 + Prom 18965 - 19024 11.9 36 3 Op 1 2/0.000 + CDS 19075 - 19767 488 ## COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes 37 3 Op 2 . + CDS 19811 - 20992 636 ## COG2046 ATP sulfurylase (sulfate adenylyltransferase) 38 3 Op 3 2/0.000 + CDS 21060 - 21818 614 ## COG0860 N-acetylmuramoyl-L-alanine amidase 39 3 Op 4 . + CDS 21870 - 22979 914 ## COG0489 ATPases involved in chromosome partitioning - Term 22961 - 22996 6.7 40 4 Tu 1 . - CDS 23001 - 23825 514 ## GYMC10_5709 spore germination protein - Prom 23857 - 23916 2.0 41 5 Tu 1 . - CDS 23963 - 24745 642 ## COG0726 Predicted xylanase/chitin deacetylase + Prom 24558 - 24617 3.8 42 6 Tu 1 . + CDS 24846 - 25457 481 ## COG1300 Uncharacterized membrane protein + Term 25520 - 25575 8.1 + Prom 25460 - 25519 2.4 43 7 Tu 1 . + CDS 25607 - 25840 196 ## Pjdr2_5639 hypothetical protein Predicted protein(s) >gi|333603045|gb|AFDH01000138.1| GENE 1 92 - 1282 1478 396 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 [marine gamma proteobacterium HTCC2080] # 1 394 1 405 407 573 71 1e-163 MAKAKFERNKPHVNIGTIGHVDHGKTTLTAAITNVLSKRYGGSAVAFDQIDKAPEERERG ITISTAHVEYETPNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHI LLSRQVGVPYIVVFMNKCDMVEDEELLELVEMEIRDLLSEYEFPGDDTPIIRGSAREALQ NPDGEWADKIIELFEQVDTYIPTPERETDKPFLMPVEDVFSITGRGTVATGRVERGTVKV QDEVEIVGIAEETRKCVVTGVEMFRKLLDSAQAGDNIGALLRGVDRKDIERGQVLSKPGS VKPHTNFSAQIYVLTKEEGGRHKPFFTGYRPQFYFRTTDVTGIIALPEGTEMVMPGDNIT VTVELINPIAIEQGTKFAIREGGRTVGAGAVATISK >gi|333603045|gb|AFDH01000138.1| GENE 2 1715 - 2023 495 102 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|192813593|ref|ZP_03042253.1| ribosomal protein S10 [Geobacillus sp. Y412MC10] # 1 102 1 102 102 195 96 3e-49 MAKQKIRIRLKAYDHRVIDQSAEKIVETAKRSGASVSGPIPLPTEKQIITILRAVHKYKD SREQFEQRTHKRLIDIVNPTPQTVDALMRLDLPSGVDIEIKL >gi|333603045|gb|AFDH01000138.1| GENE 3 2069 - 2692 892 207 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169190345|ref|ZP_02850317.1| ribosomal protein L3 [Paenibacillus sp. JDR-2] # 1 206 1 206 207 348 81 3e-95 MKGILGKKLGMTQVFTPEGNVVPVTVIQAGPCVVLQKKDVDNDGYESIQIGFADKKEKNA IKPEIGHAKKANTAPKRYVKEFRGVALGEYEVGQELKADLFSEGEFVDVSGTSKGKGFQG VIKRHNQHTGPMSHGSRYHRGPGSMGSISANRVMKGKKLPGHMGSETVTLQNLQVIKVDA ERNVILVKGSIPGPRNSYVSVKSAVKK >gi|333603045|gb|AFDH01000138.1| GENE 4 2709 - 3335 918 208 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167463901|ref|ZP_02328990.1| 50S ribosomal protein L4 [Paenibacillus larvae subsp. larvae BRL-230010] # 1 208 1 208 208 358 86 3e-98 MPKVALYNVSGTQVGEVELSDVVFGIEPHVHALHEAVLLQQASVRQGTHKVKGRSEVRGG GRKPWKQKGTGRARQGSIRAPQWKGGGVVFGPTPRSYGYKLPKKVRRLAIKSALSSKVID NDIIVLDQLQMNAPKTKEFVAILKNLNVERKALVVAASYEDNVALSARNIPGVKFVVADG INVLDVMVHDKLIITKDAVQKVEEVLAQ >gi|333603045|gb|AFDH01000138.1| GENE 5 3332 - 3622 427 96 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167463900|ref|ZP_02328989.1| 50S ribosomal protein L23 [Paenibacillus larvae subsp. larvae BRL-230010] # 1 96 1 96 96 169 86 2e-41 MKNPRDIIKRPVITERSTEMMADKKYVFEVEIRANKTEIKQAIEQIFKVKVSSVNTLRMP AKPKRQGRHSGYTSEWKKAIVTLSADSKELEFFETV >gi|333603045|gb|AFDH01000138.1| GENE 6 3653 - 4483 1311 276 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|192813589|ref|ZP_03042249.1| ribosomal protein L2 [Geobacillus sp. Y412MC10] # 1 276 1 276 276 509 89 1e-144 MPIKKYKPTSPARRAMSVSSFEEITTSIPEKSLLAPLSKQAGRNNQGKITTRHQGGGHKR KYRIIDFKRNKDGIPGRVATIEYDPNRSANIALIHYADGEKRYIIAPKGLKVDDQIQSGL GSDIKVGNALALENIPVGTVIHNIELKPGKGGQLVRAAGTEAQLLGKEDVYVTIRLSSGE VRKVLKGCRATIGSVGNGDHELVKIGKAGRNRWLGKRPEVRGVVMNPNDHPHGGGEGRAP IGRKSPLSPWGKPTLGYKTRKKGKASDKYIVRRRTK >gi|333603045|gb|AFDH01000138.1| GENE 7 4532 - 4810 466 92 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169190341|ref|ZP_02850313.1| ribosomal protein S19 [Paenibacillus sp. JDR-2] # 1 92 1 92 92 184 92 7e-46 MGRSLKKGPFIDGHLMKKVEELNESSKKTVIKTWSRRSTIFPQFVGHTIAVYDGRKHVPV YVTEDMVGHKLGEFAPTRTYKGHDDDKKTGKR >gi|333603045|gb|AFDH01000138.1| GENE 8 4841 - 5173 481 110 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167465558|ref|ZP_02330647.1| 50S ribosomal protein L22 [Paenibacillus larvae subsp. larvae BRL-230010] # 1 110 1 110 110 189 86 1e-47 MQAKAAAKFVRIAPRKVQLVIDLIRGKQVGDAVAILRHTPKSASPIVEKVLNSAIANAEH NYSMDPNKLVISEVYVNHGPIMKRFRPRAMGRASRINKRTSHITVVVSEK >gi|333603045|gb|AFDH01000138.1| GENE 9 5187 - 5849 1024 220 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167465559|ref|ZP_02330648.1| 30S ribosomal protein S3 [Paenibacillus larvae subsp. larvae BRL-230010] # 1 220 1 220 220 399 89 1e-110 MGQKVSPVGLRIGIIRDWESKWYAEKDFGDLLMEDVKIREYLKNKLKDSAVSHIDIERAA NRVNVTIHTAKPGMVIGKGGAEVENIRNYIANMTGKKVHINIAEVKNPELDAVLVAESIA QQLERRVSFRRAMKQAMQRTQRAGAKGIKVSTSGRLGGAEIARTEGYSEGTVPLHTLRAD IDYGTAEAHTTYGRIGVKVWIYRGEVLPTAKKKAQSEGGN >gi|333603045|gb|AFDH01000138.1| GENE 10 5852 - 6286 712 144 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167465560|ref|ZP_02330649.1| 50S ribosomal protein L16 [Paenibacillus larvae subsp. larvae BRL-230010] # 1 144 1 144 144 278 93 2e-74 MLVPKRVKHRKEHRGKMRGRAKGGTEVVFGEYGLQALEPAWITNRQIEAARIAMTRYIKR GGKVWIKIFPSKPITQKPLEVRMGSGKGNVEKWVSVVKPGKVMFELAGVSEEVAREAMRL AMHKLPVKCKFVKKEEVGGEAHEG >gi|333603045|gb|AFDH01000138.1| GENE 11 6276 - 6473 299 65 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167465561|ref|ZP_02330650.1| 50S ribosomal protein L29 [Paenibacillus larvae subsp. larvae BRL-230010] # 1 65 1 65 65 119 92 2e-26 MKASEFRNLTTAEIEQRINGFKEELFNLRFQLATGQLDNPVQIQKLRKEIARAKTVLRER ELGIG >gi|333603045|gb|AFDH01000138.1| GENE 12 6500 - 6763 424 87 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167465562|ref|ZP_02330651.1| 30S ribosomal protein S17 [Paenibacillus larvae subsp. larvae BRL-230010] # 1 87 1 87 87 167 95 5e-41 MAERNERKVQTGKVVSDKMDKTIVVAVETYKKHDLYHKRIKYTKKFKAHDENNEAQIGDT VKIMETRPLSKDKRFRLVEIVEKAVIV >gi|333603045|gb|AFDH01000138.1| GENE 13 6796 - 7164 578 122 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167465563|ref|ZP_02330652.1| 50S ribosomal protein L14 [Paenibacillus larvae subsp. larvae BRL-230010] # 1 122 1 122 122 227 94 7e-59 MIQPLSRLKVADNSGAKQLMCIRVLGGTGRRVGNIGDLIICSVKEATPGGVVKKGDVVKA VIVRTKSGARRKDGSYITFDENAAVIVKDDKSPRGTRIFGPVARELRDKDFMKIVSLAPE VI >gi|333603045|gb|AFDH01000138.1| GENE 14 7266 - 7619 548 117 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167465564|ref|ZP_02330653.1| 50S ribosomal protein L24 [Paenibacillus larvae subsp. larvae BRL-230010] # 1 117 1 117 117 215 87 2e-55 MPRTKKRLESHNHKLHVKKDDTVFVISGKDKGKKGRVLAAYPRENRVLVEGVNMIKKHAK PSQQNPQGGIITQEAAIHASNVMLVDPKSGKPTRVGYKVLENGTKVRIAKKSGEAID >gi|333603045|gb|AFDH01000138.1| GENE 15 7649 - 8191 867 180 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167465565|ref|ZP_02330654.1| 50S ribosomal protein L5 [Paenibacillus larvae subsp. larvae BRL-230010] # 1 180 1 180 180 338 93 2e-92 MAARMKDRFLNEITPALMQKFNYTTVMQVPKIEKVVINMGVGEAVSNSKVLDSAVEDLQK IAGQKPVITRAKKSIAGFKLRENMPIGVKVTLRGQRMYQFLDKLFNVSLPRVRDFRGVSS KAFDGRGNYTLGLKEQLIFPEIEYDQIDKVRGMDIVIVTTAKTDEEARELLTQLGMPFVK >gi|333603045|gb|AFDH01000138.1| GENE 16 8285 - 8470 311 61 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167465566|ref|ZP_02330655.1| 30S ribosomal protein S14 [Paenibacillus larvae subsp. larvae BRL-230010] # 1 61 1 61 61 124 91 6e-28 MAKTSMKIKQQRPPKFKVQAYTRCERCGRPHSVLRKFKICRICFRELAYKGQIPGVRKAS W >gi|333603045|gb|AFDH01000138.1| GENE 17 8503 - 8901 623 132 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167465567|ref|ZP_02330656.1| SSU ribosomal protein S8P [Paenibacillus larvae subsp. larvae BRL-230010] # 1 132 1 132 132 244 91 4e-64 MVMSDPIADMLTRIRNANIVRHETVEIPASKIKKEIAEILKNEGFIRDAEFVEDNKQGII RLFLKYGPNNERVITGLKRISKPGLRVYTKSQEIPRVLGGLGIAIISTSGGVMTDKDARQ AKSGGEVLCYVW >gi|333603045|gb|AFDH01000138.1| GENE 18 8931 - 9473 773 180 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169190330|ref|ZP_02850302.1| ribosomal protein L6 [Paenibacillus sp. JDR-2] # 1 180 1 180 180 302 80 2e-81 MSRIGRKPITVPSGVDVKLENTTITVKGPKGTLSRELHKDMKVSVQDNVITVERPSDHKL HRSLHGTTRSVLNNMVTGVTQGFEKNLELVGVGYRANKTGNKLVLNVGYSHPVEINPEGG IEFDVPSNTKVIVKGIDKELVGATAAKIRAVREPEPYKGKGIKYEGERIIRKEGKAGKKK >gi|333603045|gb|AFDH01000138.1| GENE 19 9526 - 9891 516 121 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167465569|ref|ZP_02330658.1| 50S ribosomal protein L18 [Paenibacillus larvae subsp. larvae BRL-230010] # 1 121 1 122 122 203 83 1e-51 MITKGDKNKARLKRHLRVRKKIQGTTARPRLNIFRSEKHMYAQIIDDVNGVTVASASTQD KELKEVSNGGNVEAARKVGELVANRAKEKGVSQVVFDRGGYLYHGRVQALAEAAREAGLE F >gi|333603045|gb|AFDH01000138.1| GENE 20 9920 - 10417 780 165 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169190328|ref|ZP_02850300.1| ribosomal protein S5 [Paenibacillus sp. JDR-2] # 1 165 1 165 165 305 93 3e-82 MRVDPNTLELTEKVVHINRVAKVVKGGRRFSFSALVVVGDGNGYVGAGIGKASEVPDAIR KGIEDAKKNLVHVPIVGTTIPHLVTGHFGAGRVLLKPASEGTGVIAGGPVRAVLELAGVG DILTKSLGSSNSMNMVNATLEGLSRLKKAEEVAKLRGKTVEELMG >gi|333603045|gb|AFDH01000138.1| GENE 21 10429 - 10614 221 61 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|192813575|ref|ZP_03042235.1| ribosomal protein L30 [Geobacillus sp. Y412MC10] # 1 60 1 60 61 89 71 2e-17 MSKLQITLKRSLIGRPETQKKTVQALGLRKLNHSVVQSDNEAIRGMINQVSHLIEVKEIQ A >gi|333603045|gb|AFDH01000138.1| GENE 22 10646 - 11086 683 146 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167465211|ref|ZP_02330300.1| 50S ribosomal protein L15 [Paenibacillus larvae subsp. larvae BRL-230010] # 1 146 1 146 146 267 89 5e-71 MKLHELSSAEGARHTRKRLGRGVGSGLGKTSGRGHKGQNARSGGGVRPGFEGGQNPLYRR LPKRGFVNPTRKEFAIVNLEDLNKFEAGTEVTPELLMETGVVKSPKDGIKILGNGELTVK LTVKANKFSQSAVDKIQAAGGQSEVI >gi|333603045|gb|AFDH01000138.1| GENE 23 11086 - 12393 878 435 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163796899|ref|ZP_02190856.1| 30S ribosomal protein S11 [alpha proteobacterium BAL199] # 10 435 19 439 447 342 44 1e-93 MFRTLSNIFKVEDLRKRIIFTLLVLIIYRIGAFIPVPNINAELLKLQDQANQNSVFGLLN TFSGGALFQFSIFSMSIFPYITASIIVQLLSMDVVPRLTQWAKEGEVGRKKSAQLTRYLT VVLGVIQAYGYAIMFNNSFQGLVINPSFATYSLIAIVLTAGTMFLMWLGEQITEKGIGNG ISIIIFAGIVAAIPTGISQIYQTQFANAGDALFLNILKIVLILIVVVAIIVGVIYVQQGV RKIPVQYAKRVVGRKMYGGQSTHIPMKVNAAGVIPVIFAVSLLQFPTIIAGFWAGNPFAD WIIRNLSINNSAPIALALYVLLIVGFTYFYTFVQINPVQMADQMKKNGGYIPGVRPGKPT SSYLTRVMSRITLSGAFFLAFISILPMIFGALAGLPTSVRIGGTSLLILVGVALETLKTV ESQLIKRHYKGFINK >gi|333603045|gb|AFDH01000138.1| GENE 24 12479 - 13132 279 217 aa, chain + ## HITS:1 COG:BS_adk KEGG:ns NR:ns ## COG: BS_adk COG0563 # Protein_GI_number: 16077205 # Func_class: F Nucleotide transport and metabolism # Function: Adenylate kinase and related kinases # Organism: Bacillus subtilis # 1 214 1 214 217 266 61.0 2e-71 MNVLFMGPPGAGKGTQAEKIVSEFQIPHISTGDAFRLAMSQGTPLGIEAKSYVDQGKLVP DEITNGIVRERLQQPDCDKGFLLDGFPRTIAQAEALDEILQSLGKRIDHVINLKVDRSFL LARLTGRRICKSCGATYHVIFNPPKQEGVCDKCSGELYQRSDDTEEKVGTRLDEYTSKTA PLLEYYQKRNVLREVDGEQDIEDVTSQISSLLRGHSE >gi|333603045|gb|AFDH01000138.1| GENE 25 13165 - 13881 413 238 aa, chain + ## HITS:1 COG:BS_map KEGG:ns NR:ns ## COG: BS_map COG0024 # Protein_GI_number: 16077206 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionine aminopeptidase # Organism: Bacillus subtilis # 1 236 13 248 248 354 72.0 8e-98 MREAGRIVAETHKLMAESVRPGITTKDLDKIAEEYIRSQGAIPSFKGYNGFSGSICTSVN EELVHGIPGSRKLVEGDVISIDIGAQYKGYHGDSAWTYGVGEISETAKKLLEVTERSLFA GLAEAKPDARLYTISHAIQQVIEDAGFSVVREYVGHGIGTELHEDPQIPNYGIRDKGPRL KPGMVLAIEPMVNVGQRFVKTLEDDWTVVTVDNSLCAHFEHTIAITADGYEILTQLKA >gi|333603045|gb|AFDH01000138.1| GENE 26 13891 - 14202 142 103 aa, chain + ## HITS:1 COG:BH0157 KEGG:ns NR:ns ## COG: BH0157 COG2163 # Protein_GI_number: 15612720 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosomal protein L14E/L6E/L27E # Organism: Bacillus halodurans # 1 92 1 92 102 89 52.0 1e-18 MVDQEQLPQPGQIVKILRGKDQGQYAIIIRAEDSRFVWIADGDKRRFDQPKKKNVQHLQL QSKISGEVSRSLTESSRVTNAKLRHAVKKFIDSLQSEADEKGE >gi|333603045|gb|AFDH01000138.1| GENE 27 14206 - 14424 293 72 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15900168|ref|NP_344772.1| translation initiation factor IF-1 [Streptococcus pneumoniae TIGR4] # 1 72 1 72 72 117 77 8e-26 MAKEDVIEVEGTVIEPLPNAMFKVELENGHKILAHVSGKIRMHFIRILPGDKVTVELSPY DLTRGRITYRFK >gi|333603045|gb|AFDH01000138.1| GENE 28 14513 - 14626 201 37 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|56961956|ref|YP_173678.1| 50S ribosomal protein L36 [Bacillus clausii KSM-K16] # 1 37 1 37 37 82 100 4e-15 MKVRPSVKPICEKCKVIRRKGNVMVICENPKHKQKQG >gi|333603045|gb|AFDH01000138.1| GENE 29 14647 - 15015 556 122 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169190319|ref|ZP_02850291.1| ribosomal protein S13 [Paenibacillus sp. JDR-2] # 1 122 1 122 122 218 86 2e-56 MARIAGVDLPRDKRVEIALTYIFGIGKTTSQKVLSQTGVDASTRVRDLTEEEVSKIREVI DKTIKVEGDLRREIALNIKRLVEIGCYRGIRHRRGLPVRGQRTKTNARTRKGPRRTVANK KK >gi|333603045|gb|AFDH01000138.1| GENE 30 15037 - 15432 649 131 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169190318|ref|ZP_02850290.1| ribosomal protein S11 [Paenibacillus sp. JDR-2] # 1 131 1 131 131 254 94 4e-67 MAKPKKVVRTKRRDRKNIESGVAHIRSTFNNTIVTITDPHGNALSWASAGNLGFKGSRKS TPFAAQMAAESAARAAMEHGLKVVEVMVKGPGAGREAAIRSLQAAGLEVNLIKDVTPIPH NGCRPPKRRRV >gi|333603045|gb|AFDH01000138.1| GENE 31 15555 - 16499 727 314 aa, chain + ## HITS:1 COG:BH0162 KEGG:ns NR:ns ## COG: BH0162 COG0202 # Protein_GI_number: 15612725 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, alpha subunit/40 kD subunit # Organism: Bacillus halodurans # 1 314 1 314 314 469 82.0 1e-132 MIEIEKPKIETVSLSEDGAYGKFVVEPLERGYGTTLGNSLRRILLSSLPGAAVSSVQIDG VLHEFSTIPGVMEDVTEIILNLKGLSLKIHSDEEKVLEIDAEGEGRITAADIRGDSDVEI LNPDLHIATLSSDSRLHMRIHANRGRGYVPADKNKRDEQLIGVIPVDSIYTPITRVNYTV ENTRVGQVTNYDKLTLEVWSDGSIRPEEAVSLGAKILTEHLMLFVGLTDEAKDAEIMVEK EEDKKEKVLEMTIEELDLSVRSYNCLKRAGINTVQELITKTEEDMMKVRNLGRKSLEEVQ EKLEELGLGLRTEE >gi|333603045|gb|AFDH01000138.1| GENE 32 16524 - 16886 537 120 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|192814010|ref|ZP_03042661.1| ribosomal protein L17 [Geobacillus sp. Y412MC10] # 1 120 1 121 121 211 90 4e-54 MAYQKLGRDSSARKALFRDLVTDLFINERIQTTEAKAKEVRSIAEKLITLAKRGDLHARR QVAAFVRRETAGDQDAIQKLFSELATRYAERPGGYTRILKLGPRRGDAAPMVYLELVDRA >gi|333603045|gb|AFDH01000138.1| GENE 33 17010 - 17780 269 256 aa, chain + ## HITS:1 COG:BH0167 KEGG:ns NR:ns ## COG: BH0167 COG0101 # Protein_GI_number: 15612730 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthase # Organism: Bacillus halodurans # 1 248 1 239 263 242 49.0 5e-64 MRNIRITVSYDGTSYSGFQTQPHGNTVQDYLERAIRMLSGETVKITSSGRTDAGVHARAQ VINFTTASQIPAERWCLALNSRLPKDIVALRADEVPLSFHARKSAKRKTYSYTIRTARIP DTFQRRYQFHHPNPLDVDAMRDALAAILGTHDFSSFCSVKTVAESRIRTIYDAWIVEETD QMSVEPNQPGQLRFYFTGSGFLYNMVRILVGTLIQIGEGKRPAEEMAAILRGRNRALAGP TAEAHGLMLWNVEYAE >gi|333603045|gb|AFDH01000138.1| GENE 34 17955 - 18392 646 145 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|192814012|ref|ZP_03042663.1| ribosomal protein L13 [Geobacillus sp. Y412MC10] # 1 145 1 145 145 253 78 9e-67 MRTTYMAKPNEVERKWYIIDATGKTLGRLASEAASIIRGKHKPQFTPHVDSGDFVIIINA EKIHLTGNKLQDKKYYRHSMHPGGLKVTTAQDMLNKKPERVLEFAIHGMLPKTRLGNSMK LKLKVYAGAEHPHQAQQPEVWELRG >gi|333603045|gb|AFDH01000138.1| GENE 35 18413 - 18805 625 130 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|192814013|ref|ZP_03042664.1| ribosomal protein S9 [Geobacillus sp. Y412MC10] # 1 130 1 130 130 245 93 2e-64 MAQVQYYGTGRRKHSVARVRLVPGEGRIIINKRDLNEYFGLETLKLIVKQPLTLTETIGK YDVLVLANGGGMSGQAGAIRHGISRALLKADPEFRGSLKRAGFLTRDPRMKERKKYGLKA ARRAPQFSKR >gi|333603045|gb|AFDH01000138.1| GENE 36 19075 - 19767 488 230 aa, chain + ## HITS:1 COG:BH1486 KEGG:ns NR:ns ## COG: BH1486 COG0175 # Protein_GI_number: 15614049 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes # Organism: Bacillus halodurans # 10 230 9 231 231 224 46.0 9e-59 MNLFEKEALVNKAAEEFENQSPEELIRWAVNTFPSITLACSFGAEDVVLVDMLHKVSPET DIFYLDTNVHFQETYNTRDRLEDHYQKSFIQVLPKLTLEEQAAQYGAELWLSAPNECCNI RKVDPLTDILKNYDAWITGIRRDQAPTRANAKKVEYDVKFGLVKFNPLAGWTSDDVWDYI RSNGIIYNALHDQNFPSIGCSHCTNPVAPGEDPRAGRWAGNDKTECGLHK >gi|333603045|gb|AFDH01000138.1| GENE 37 19811 - 20992 636 393 aa, chain + ## HITS:1 COG:BH1487 KEGG:ns NR:ns ## COG: BH1487 COG2046 # Protein_GI_number: 15614050 # Func_class: P Inorganic ion transport and metabolism # Function: ATP sulfurylase (sulfate adenylyltransferase) # Organism: Bacillus halodurans # 7 388 6 379 381 516 64.0 1e-146 MPSSIAPHGGTLINRLITGSEREQLLAAAGDLPQIRINNWAISDLDLIGVGAFSPLTGFL NEEDYHSVVERMRLADGTVWSIPVTLAVEEAVAEELAVGTQAALVGEEDGVVYGLIDVTS IYKADQQLEARQVFKTDDKEHPGVQKLLSRPSTYIGGPVQVLNRPKPAKFEDFYYDPAET RRIFAEKNWRTIVGFQTRNPVHRAHEYIQKSAMEIVDALFLNPLVGETKSDDISADVRMK SYFVLLENYYPSDRAFLGVFPAAMRYAGPREAIFHALVRKNYGCTHFIVGRDHAGVGDYY GTYEAQEIFSNFTPEEIGITPLFFEHSFYCTKCGNMASSKTCPHDKADHLHLSGTKVRAL LRDGQCPPQEFTRPEVAKVLIDGMSEPVGTSAQ >gi|333603045|gb|AFDH01000138.1| GENE 38 21060 - 21818 614 252 aa, chain + ## HITS:1 COG:BH0239 KEGG:ns NR:ns ## COG: BH0239 COG0860 # Protein_GI_number: 15612802 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: N-acetylmuramoyl-L-alanine amidase # Organism: Bacillus halodurans # 24 247 11 233 238 243 53.0 3e-64 MRRPRKRFVVWLTWDSGIKIIMAALLVMLMAFMYTYELPSTRTWSEWSMPLSGKTIALDA GHGGPDGGAISQSGVIEKDINLAITLYLRDYLQQAGAMVVMTRETDTDLAQEGTKGLSRR KTEDLLSRAEFINGKKADLFISVHLNSIPSDKWRGAQTFYYPNHPDNATLSTLIQNELKK NLENTERVAKKADTGVYLLKTLKMPSALVEVGFLSNPEESRLLADDKYQKKVAASVYQAI LRYFSGEKVRSS >gi|333603045|gb|AFDH01000138.1| GENE 39 21870 - 22979 914 369 aa, chain + ## HITS:1 COG:BS_ybaL KEGG:ns NR:ns ## COG: BS_ybaL COG0489 # Protein_GI_number: 16077222 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Bacillus subtilis # 1 362 1 344 352 372 50.0 1e-103 MVTKELIRQSLQPITDPTYGASIVELNFVKDVVIKENRVSLTCVLSVTDESYKASIKERI ESALSQIGAEGVHIRFREITDYEKNQLSAYEDASEAGSVETADTNAGTGQEAAPLLNPDS PVNFIAVASGKGGVGKSTVTANLAVALARLGKRVGIMDADIYGFSIPDMMGIEEQPQLVN NRIIPVQKFGVKVISMGFFVEDNSPVIWRGPMLGKMLHNFFHEVDWGELDYLLLDLPPGT GDIALDIHQLLPQSKEILVTTPHATAAFVAARAGAMAVHTKHEIIGVVENMAYYECSKCG EKDYVFGRGGGGMLAEQLHTQLLAQIPLGAPDNHISEPDYSPSVYKEDSTTGQLYLELAR SVVQQTQKD >gi|333603045|gb|AFDH01000138.1| GENE 40 23001 - 23825 514 274 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_5709 NR:ns ## KEGG: GYMC10_5709 # Name: not_defined # Def: spore germination protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 12 199 13 198 235 134 41.0 3e-30 MNRKTVRYVPALVAVILLASCSSDNSSQGSSSSQGNYKETKSMVLDILKSDEGRAAIDKA ARSGLSSAGSGNSSVSMLTDGQKLQMQTAVKDVLTSTESSKFVRDMMKDPRFAGDFAKAV STQNKQLHKDLMKDPEYQKQLLQVMKNPEYQQLMMELTRTTQYRQQMMNVIQESFQSPLF QAQMLTIMRKVMEEGIVPKGAGGQSQGGQGGKGGQGGGQGGKGGQGSGGEGGQQGQGDQK SKQDQGQEGDQGDQGQDEKESPNKKGKKDQDSEY >gi|333603045|gb|AFDH01000138.1| GENE 41 23963 - 24745 642 260 aa, chain - ## HITS:1 COG:BH0243 KEGG:ns NR:ns ## COG: BH0243 COG0726 # Protein_GI_number: 15612806 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted xylanase/chitin deacetylase # Organism: Bacillus halodurans # 1 252 1 253 253 260 48.0 2e-69 MSHFYVFNGKKIKQAVFIGVAVVFAAGIVYSERGNMAVFSSGGPAAIYNVKTEKKQIALT FDISWGETRTDPILDVLEQKGIKNATFFLSSPWSKSHPDIVNRIIKNGYEIGSHGHKHVN YSSLGDEEIRKQIQTADGVLKEFTGKSPNLIRMPNGDFDKRVLGIADQLGYKVIQWDTDS LDWKNPGVETIINRVVSKAHPGDIVLLHASDSCKQTHEALPAIIDQLKSKGYEFVTVTEL MKQAQTENKAVEEQSFKQVY >gi|333603045|gb|AFDH01000138.1| GENE 42 24846 - 25457 481 203 aa, chain + ## HITS:1 COG:AF0624 KEGG:ns NR:ns ## COG: AF0624 COG1300 # Protein_GI_number: 11498232 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Archaeoglobus fulgidus # 47 197 37 178 185 86 40.0 3e-17 MKWRELFKHFGEMKHYLIASVLVFAAGLVLGTMYPDRFQAFLDQQMKGLEKISELVKGKE NLNLWLFIVIFLNNAIKSLMFVYLGLFFGILPLMVLLVNGMLLGYVIQYQMEAQSLAYVL KGILPHGILEIPAIIVACAYGLRLGILVIKMIGGLFSSKRSGNAAAEFKRVMRLTRPLIL LVVGTLLLAAVVESTVTLWLLKG >gi|333603045|gb|AFDH01000138.1| GENE 43 25607 - 25840 196 77 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_5639 NR:ns ## KEGG: Pjdr2_5639 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 2 69 1 68 73 91 75.0 1e-17 MMLGFLFNDRECRELDYVLRKELDEMLFDLNDKRMDEEIKKAIESRYKVIFRMYARLASP REISKYARNRVQHQKKS Prediction of potential genes in microbial genomes Time: Sun Jul 17 11:00:20 2011 Seq name: gi|333603011|gb|AFDH01000139.1| Paenibacillus sp. HGF7 contig00003, whole genome shotgun sequence Length of sequence - 32941 bp Number of predicted genes - 35, with homology - 33 Number of transcription units - 13, operones - 8 average op.length - 3.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) + TRNA 22 - 112 66.6 # Ser GCT 0 0 + TRNA 120 - 196 87.2 # Met CAT 0 0 + TRNA 211 - 286 94.8 # Val TAC 0 0 + 5S_RRNA 217 - 271 94.0 # AF302131 [D:490..741] # 5S ribosomal RNA # Streptococcus agalactiae # Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus. + TRNA 302 - 378 69.6 # Asp GTC 0 0 + TRNA 408 - 483 92.9 # Phe GAA 0 0 + TRNA 526 - 611 74.3 # Tyr GTA 0 0 + TRNA 622 - 694 89.5 # Lys TTT 0 0 - Term 771 - 820 -0.3 1 1 Tu 1 . - CDS 935 - 1243 217 ## COG0011 Uncharacterized conserved protein 2 2 Tu 1 . + CDS 1291 - 1506 77 ## - Term 1379 - 1417 1.2 3 3 Op 1 . - CDS 1576 - 3156 1000 ## COG2303 Choline dehydrogenase and related flavoproteins 4 3 Op 2 . - CDS 3132 - 3728 135 ## BBR47_04880 hypothetical protein 5 3 Op 3 . - CDS 3734 - 4126 393 ## BBR47_04870 hypothetical protein - Prom 4180 - 4239 2.4 + Prom 4139 - 4198 3.8 6 4 Tu 1 . + CDS 4385 - 5332 884 ## COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase + Prom 5350 - 5409 3.9 7 5 Op 1 4/0.000 + CDS 5455 - 6570 1078 ## COG2508 Regulator of polyketide synthase expression + Term 6577 - 6619 -0.7 + Prom 6573 - 6632 2.5 8 5 Op 2 . + CDS 6673 - 7797 976 ## COG3839 ABC-type sugar transport systems, ATPase components + Term 7814 - 7847 2.1 + Prom 7826 - 7885 2.8 9 6 Op 1 10/0.000 + CDS 7987 - 8928 967 ## COG1493 Serine kinase of the HPr protein, regulates carbohydrate metabolism 10 6 Op 2 1/0.000 + CDS 8979 - 9911 1004 ## COG0682 Prolipoprotein diacylglyceryltransferase 11 6 Op 3 3/0.000 + CDS 9947 - 10600 719 ## COG0546 Predicted phosphatases 12 6 Op 4 . + CDS 10597 - 11181 408 ## COG0110 Acetyltransferase (isoleucine patch superfamily) + Prom 11232 - 11291 5.2 13 7 Op 1 11/0.000 + CDS 11372 - 12595 1172 ## COG3705 ATP phosphoribosyltransferase involved in histidine biosynthesis 14 7 Op 2 18/0.000 + CDS 12817 - 13452 495 ## COG0040 ATP phosphoribosyltransferase 15 7 Op 3 6/0.000 + CDS 13544 - 14833 1366 ## COG0141 Histidinol dehydrogenase 16 7 Op 4 18/0.000 + CDS 14826 - 15542 654 ## COG0131 Imidazoleglycerol-phosphate dehydratase 17 7 Op 5 25/0.000 + CDS 15545 - 16162 642 ## COG0118 Glutamine amidotransferase 18 7 Op 6 23/0.000 + CDS 16205 - 16930 838 ## COG0106 Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase 19 7 Op 7 24/0.000 + CDS 17028 - 17786 772 ## COG0107 Imidazoleglycerol-phosphate synthase 20 7 Op 8 . + CDS 17783 - 18460 741 ## COG0139 Phosphoribosyl-AMP cyclohydrolase + Term 18684 - 18724 3.1 + Prom 18554 - 18613 4.5 21 8 Op 1 . + CDS 18780 - 19730 826 ## COG0462 Phosphoribosylpyrophosphate synthetase 22 8 Op 2 3/0.000 + CDS 19803 - 21554 1470 ## COG0457 FOG: TPR repeat + Prom 21556 - 21615 4.8 23 8 Op 3 1/0.000 + CDS 21687 - 22634 885 ## PROTEIN SUPPORTED gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 + Term 22656 - 22709 6.2 + Prom 22684 - 22743 4.3 24 9 Op 1 . + CDS 22807 - 23754 576 ## PROTEIN SUPPORTED gi|116517028|ref|YP_816079.1| glucokinase 25 9 Op 2 12/0.000 + CDS 23822 - 24709 759 ## COG1660 Predicted P-loop-containing kinase 26 9 Op 3 12/0.000 + CDS 24722 - 25708 823 ## COG0391 Uncharacterized conserved protein 27 9 Op 4 . + CDS 25715 - 25912 283 ## COG1481 Uncharacterized protein conserved in bacteria 28 9 Op 5 2/0.000 + CDS 25872 - 26657 508 ## COG1481 Uncharacterized protein conserved in bacteria + Prom 26659 - 26718 3.1 29 9 Op 6 . + CDS 26927 - 27196 273 ## COG1925 Phosphotransferase system, HPr-related proteins + Term 27201 - 27240 4.3 + Prom 27224 - 27283 3.4 30 10 Tu 1 . + CDS 27348 - 29105 2023 ## Deima_1047 copper amine oxidase-like domain-containing protein + Term 29135 - 29188 14.0 - Term 29121 - 29178 11.9 31 11 Tu 1 . - CDS 29189 - 29791 718 ## COG0740 Protease subunit of ATP-dependent Clp proteases - Prom 29846 - 29905 6.3 + Prom 29774 - 29833 3.6 32 12 Op 1 . + CDS 29951 - 30064 152 ## 33 12 Op 2 . + CDS 30147 - 30797 230 ## PROTEIN SUPPORTED gi|223039927|ref|ZP_03610210.1| ribosomal protein L22 + Term 30821 - 30870 -0.4 - TRNA 30871 - 30942 54.4 # Arg CCG 0 0 + Prom 31038 - 31097 8.1 34 13 Op 1 5/0.000 + CDS 31184 - 32212 1165 ## COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain 35 13 Op 2 . + CDS 32264 - 32939 538 ## COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase Predicted protein(s) >gi|333603011|gb|AFDH01000139.1| GENE 1 935 - 1243 217 102 aa, chain - ## HITS:1 COG:CAC2786 KEGG:ns NR:ns ## COG: CAC2786 COG0011 # Protein_GI_number: 15896041 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Clostridium acetobutylicum # 1 99 1 100 100 112 60.0 2e-25 MAIAEITVVPIGTSSTSLSEYVAHLQKVLDNQPLHYELTPMSTIIEGPLDQLMEVILKLH ESPFENGAQRVSTSIKIDDRRDKTASMQQKLQSVADKLERLQ >gi|333603011|gb|AFDH01000139.1| GENE 2 1291 - 1506 77 71 aa, chain + ## HITS:0 COG:no KEGG:no NR:no METMPGGYLLLGKGGSAWVTISAFVTRKGKLRQTPDQRLPHRVPSRGALGRYKRYQELGQ VQPAYEFRAFS >gi|333603011|gb|AFDH01000139.1| GENE 3 1576 - 3156 1000 526 aa, chain - ## HITS:1 COG:VNG1035C KEGG:ns NR:ns ## COG: VNG1035C COG2303 # Protein_GI_number: 15790141 # Func_class: E Amino acid transport and metabolism # Function: Choline dehydrogenase and related flavoproteins # Organism: Halobacterium sp. NRC-1 # 14 525 6 529 529 242 35.0 1e-63 MGGETGTMKWNTQSETVDVVIIGAGAAGGVLAQELSEAGLQVVVVEAGPLRDPQRDFASD ELSMQCLGWQDTRLVDGEHPLAMGHNNSGWGVGGGTQHFTGVFLRFHESDFKTRSIDGVG EDWPIHYKDLEPYYSRIEKEIAVSGPRHFPWGNFRGPYPYPERDPLSPNAYLFQRGCESL GIRSVTAPLAILSAPFEGRPPCINRGFCQQGCMPNAKFSTLIQHIPKAVQAGATVLTDSR VTQIETGPDGRASGVLFMKNGVEYRQKAKLVIVSAYAVETPRLLLNSANSRHPDGLANSS GWVGKALMTHSSHDVYAKFEEEVRLYKGTPVLATTQEFYESDRSRGFARGYSLHAHGTRP LAFAQGIVKTGEFPIWGAPLREAMLDYNYYGRATLVGEVLPQEHNCVTLSREKDAFGLPR AKVSFSFGENDTNLIEHAVSNMKSILQAAGGTPEFVVPDTAHLMGGCRMGSDPSRSVTNS FGQTHDIPNLFVCDASLFVTSSGVNPTNTVMALAARTADYIVSEII >gi|333603011|gb|AFDH01000139.1| GENE 4 3132 - 3728 135 198 aa, chain - ## HITS:1 COG:no KEGG:BBR47_04880 NR:ns ## KEGG: BBR47_04880 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 1 195 1 195 200 164 42.0 2e-39 MRKMPKYPSFDVMKEQNHWDPHTRSIVSSRMRRRREYRLLTLLEAEQLRSVCSLLVADDR SEILTYVLEHIDDTLCGQKEEGQRGPDTPPQSDLIRKGLEALETMSHGFHARPFQQLSPA EQKELLTNVAEVRLPLRGDWPDAVQKAFFNRLLALTVEAYYSHPQIWSEIGYAGPAYPRG YIRADRGHLDPWEAKPER >gi|333603011|gb|AFDH01000139.1| GENE 5 3734 - 4126 393 130 aa, chain - ## HITS:1 COG:no KEGG:BBR47_04870 NR:ns ## KEGG: BBR47_04870 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 2 128 1 128 129 98 44.0 9e-20 MIWNTWTLDRSVILFTAFAYLVIAAQVTLSHYRQNFHRKVMLVPVITAPLYFLVGLLAVL LNRPWFLHLFHMGMWLGILTGLYGLSLHTRGVGKRVGSYAFRNFLIGPPVLMPLLYSALG VLGLIAVYGR >gi|333603011|gb|AFDH01000139.1| GENE 6 4385 - 5332 884 315 aa, chain + ## HITS:1 COG:lin0958 KEGG:ns NR:ns ## COG: lin0958 COG0472 # Protein_GI_number: 16800027 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase # Organism: Listeria innocua # 16 312 15 304 351 190 42.0 4e-48 MHYLIPMLTSFILVALLVPVMKRIAVKAGFVDRPSTRKIHAAPIPLLGGVAIYIACAAAI LLFSRNGNLSYAVLIGGTVLMLTGLTDDWFKTRSKDFPVWPRLIIYIAVSAVPLLFGIQI IGVSNLHFSGMIFFPVWLVWLGTMAWIFGITNMINFIDGVDGLASGIVTIASLALLVAAL VKRQEDSALIAGILVGACLAFLAFNFYPAKIFMGDAGAIFLGYTIAVVAVDGAFKSATFI SLLVPVLALGVPILDTVIVFTRRLLKGGGLHRADKLHTHHSLMQWGLSQTQTVSFLYLVG ALFSLLSIIVVLMGV >gi|333603011|gb|AFDH01000139.1| GENE 7 5455 - 6570 1078 371 aa, chain + ## HITS:1 COG:CAC3236 KEGG:ns NR:ns ## COG: CAC3236 COG2508 # Protein_GI_number: 15896482 # Func_class: T Signal transduction mechanisms; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Regulator of polyketide synthase expression # Organism: Clostridium acetobutylicum # 302 369 245 312 312 70 42.0 6e-12 MDWERLKEQLESIGKGPVRLIAKTPEEWETLTRNAGKNNGDRQALNKSSMLIGKDVYFLL GREGNQVHALSIPAGNMAGDERHLVEWLIESAQPEKRQSGTLLLEEEKKLSALREWLLQH AETDSQAEVPDTISSQAGLYSTKIPFLLYGDYSSNVRASYRELKRLLETFFDAEIILIPL LDKEWLILAPDYLLTVGQEDKTDAQEESTEQMLDALASGLHDMLATEWVGESHLGVHYPI QPAQTLLASMLSLRSTIMLGRLYNVTNNIHTPWHLQMEKLLHPIPDSEKHQFLEHVLKDY SMDAETQSTLESFFALDCNVSETAKKLYIHRNTLLYRLDKFKNETGLDVRTFHDAVLVKL ALVLYKVTKRK >gi|333603011|gb|AFDH01000139.1| GENE 8 6673 - 7797 976 374 aa, chain + ## HITS:1 COG:BH1140 KEGG:ns NR:ns ## COG: BH1140 COG3839 # Protein_GI_number: 15613703 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, ATPase components # Organism: Bacillus halodurans # 1 366 1 360 365 474 66.0 1e-133 MAGVRLNHIVKRYPGNQEATVKDFHLDIQDKEFLVLVGASGCGKSTTLRMIAGLEEISEG ELYIGDRLVNDVAPKDRDIAMVFQSYALYPHMNVYQNMAFGLKLRKFKKADIDARVREAA KILDIEHLLDRKPKALSGGQRQRVALGRAIVREPQVFLMDEPLSNLDAKLRVQMRAEISK LHKRLGVTIIYVTHDQTEAMTMGSRIVVMDKGIIQQAASPEEIYNFPVNMFVAGFIGSPS MNFVNGSLSDQGGELHFKAKGVDVVIPQGKAQVLRDKGYASKEVILGIRPEDIHDEPVFL EASAKTVVNALIEVSENLGHEMQVHLAGIGEGTVVARVDGRSGLKDGANVKLALDMNKVH FFDKETTNSILLNS >gi|333603011|gb|AFDH01000139.1| GENE 9 7987 - 8928 967 313 aa, chain + ## HITS:1 COG:BS_yvoB KEGG:ns NR:ns ## COG: BS_yvoB COG1493 # Protein_GI_number: 16080553 # Func_class: T Signal transduction mechanisms # Function: Serine kinase of the HPr protein, regulates carbohydrate metabolism # Organism: Bacillus subtilis # 4 307 3 305 310 397 65.0 1e-110 MGKKVRVSELVEHYNLEVICGEDGLKRTVTVADLYRPGLEMAGYFNYHPQERVQLLGRTE MSFFETLDETVRLHRAEQLCASEETPCIIVTRGLDIPAELVEEAKKHQLPVLRSQVATTI LASRLTNFLENKLAPSTTIHGVLVDVYGVGMLITGGSGIGKSETALELVKRGHRLVADDA VEIRQTADYMLYGNAPDLIRHLLEIRGVGIINVMTLFGAGAVRNVKKISVVARLETWQQD KQYDRLGLDEETTRIIETDVPLITIPVRPGRNLAVIVEVAAMNYRLKRMGFNAALQFTNK LTETLAEDLDDMD >gi|333603011|gb|AFDH01000139.1| GENE 10 8979 - 9911 1004 310 aa, chain + ## HITS:1 COG:BS_lgt KEGG:ns NR:ns ## COG: BS_lgt COG0682 # Protein_GI_number: 16080552 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Prolipoprotein diacylglyceryltransferase # Organism: Bacillus subtilis # 2 294 8 269 269 278 51.0 1e-74 MLNPVAFKLGPISVHWYGIILGMAALIGLLLVIREGKRFKLQPEFFMDLLLIGVPSAIVA ARIYYVAFQWENYKNNLGEIIAIWKGGIAIYGALIGAIIAALIYVRRKGYSFWRIADICA PGLIIGQMIGRWGNFVNQEAHGGPVSESFLRNTLHLPDWIVNQMNIEGIFYHPTFLYESV WNFVGLLLLFWLRRRPFLRAGELFMSYFIWYSLGRFFIEGLRTDSLDFTGPAWLASLLNG LWSPMSLLFGEAGTMTYGGNIRISQLLAVLIIIAAIIIIVLRRRMGYAKTKYSDPIEKIG GTPASANTSH >gi|333603011|gb|AFDH01000139.1| GENE 11 9947 - 10600 719 217 aa, chain + ## HITS:1 COG:BS_yvoE KEGG:ns NR:ns ## COG: BS_yvoE COG0546 # Protein_GI_number: 16080550 # Func_class: R General function prediction only # Function: Predicted phosphatases # Organism: Bacillus subtilis # 4 212 8 215 216 174 42.0 2e-43 MKHTVLFDLDGTILDTNELIIQSFLHALEGKTPELFTRDNIIPHMGRPLIEQLQFFSGLD EVTDLLTLYRSYNLKHHDELVRPFPYVKEVLAKLHAYGVKIGVVTSKIRLTTMLGLELCE LLPYIQSIVTVDDVTNAKPDPEGIRKALHELGSTAEEAVMVGDSHYDIEAAKAAGVEAVA VNWSLKGQAYLEQYHPEHMIADMRELYMIFGITEESV >gi|333603011|gb|AFDH01000139.1| GENE 12 10597 - 11181 408 194 aa, chain + ## HITS:1 COG:BH3586 KEGG:ns NR:ns ## COG: BH3586 COG0110 # Protein_GI_number: 15616148 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Bacillus halodurans # 2 163 3 164 166 233 69.0 2e-61 MRKTDRYPVDGPNALWQIYRTVSKWKAVKNFVWIQISRYCPSLPVKNWIYRRMLGMEVGE HTAFALMVMVDVFFPEKIKIGRNSIIGYNTTILAHEYLTKEYRLGEVRIGSNVMVGANTT ILPGVTIGDGAVIGAGSVVHKDVEPYSFVAGNPLQVIRTGTPDSAEARTFGASAEISGPE SASGNSTNPNSSSS >gi|333603011|gb|AFDH01000139.1| GENE 13 11372 - 12595 1172 407 aa, chain + ## HITS:1 COG:BH3584 KEGG:ns NR:ns ## COG: BH3584 COG3705 # Protein_GI_number: 15616146 # Func_class: E Amino acid transport and metabolism # Function: ATP phosphoribosyltransferase involved in histidine biosynthesis # Organism: Bacillus halodurans # 1 369 1 369 397 323 45.0 4e-88 MSKPKVFEKPTGFKDLLPESVARIREIEFSVLDCMERWGYRQIVTPTLEFYDTVGMASSI EDRKQFKLLDRNGKTLVLRSDMTAPIARVVSSLLRDEPLPLRLSYHGNVFRAMEEEAGRD SEFLQTGVELVGDPSAEADAEVVALAIASLQAAGVKAFKFALGHVGFLHGLFGETLKDHP EAQEELKSCLLARDYVGYRTAIRRMGVDEARRGELESILRLRGGKDICEQALSVTSDPTA QAAIAHLCEVWNVLEAYGVSEHVLIDLTMIGNFSYYTGLTFEGYAADLGFPLCSGGRYDN LLAQFGRPAPATGFALKTNRILEAAGDAVRKQQERVLIVYGESRRGEALGKARELRTLPG KVVVTRHAGNGTGSCASWDPAALHELGQGRYRYEGNVYSEILLYLTD >gi|333603011|gb|AFDH01000139.1| GENE 14 12817 - 13452 495 211 aa, chain + ## HITS:1 COG:BS_hisG KEGG:ns NR:ns ## COG: BS_hisG COG0040 # Protein_GI_number: 16080545 # Func_class: E Amino acid transport and metabolism # Function: ATP phosphoribosyltransferase # Organism: Bacillus subtilis # 1 207 1 207 213 256 62.0 3e-68 MQEMLKVAMPKGRIYKQAFKLFRRAGLPMPEDSGDDSRRLIVTFPEANMEFILAKPVDVP TYVEYGVADIGVVGKDVLMEENRNVYELLDLGIARCRMSVIALPDWQPVLNPRVATKYPR VASQYFRERGQQVEVIKLNGSIELAPLIGLADRIVDMVETGQTLKENGLVEYEEIFPITS RLIANRVSYRMKNDRIQQLCDALQTTIALPE >gi|333603011|gb|AFDH01000139.1| GENE 15 13544 - 14833 1366 429 aa, chain + ## HITS:1 COG:BH3582 KEGG:ns NR:ns ## COG: BH3582 COG0141 # Protein_GI_number: 15616144 # Func_class: E Amino acid transport and metabolism # Function: Histidinol dehydrogenase # Organism: Bacillus halodurans # 1 424 1 423 424 489 63.0 1e-138 MKIVPAEEFKLAREVDYGTAEQNDAVKSIIAAVRSEGDAALRRLSKEFDGVDLHELRVDE AEIEAAYDRVDAEFLKALRQAAANIRAFHEKQKRVSWMDLQDNGSLLGQIIRPLQRVGLY VPGGKAAYPSSVLMNAIPAVVAGVPEIVMVTPPATAGEEGINPHILVAAAEAGVREIYRI GGAQAVAALAYGTDTIRAVDKIVGPGNIYVALAKRAVFGVVDIDMIAGPTDIVVLADEAA DPEYIAADLLAQAEHDELSPAILVTPSRELAEQVRGEVERQLQALPRKAIAEVSTANKGA IVLVGDLDEGIRVVNAIAPEHAELLVDDPFAVLPRIENAGAIFLGAYSPEPVGDYFAGPN HVLPTNGTARFSSPLNVDDFIKKSSVISYSKEALLANGEQIMTLARNEGFEGHARAIQVR LQKEGNFHG >gi|333603011|gb|AFDH01000139.1| GENE 16 14826 - 15542 654 238 aa, chain + ## HITS:1 COG:BS_hisB KEGG:ns NR:ns ## COG: BS_hisB COG0131 # Protein_GI_number: 16080543 # Func_class: E Amino acid transport and metabolism # Function: Imidazoleglycerol-phosphate dehydratase # Organism: Bacillus subtilis # 46 238 2 194 194 315 76.0 6e-86 MAEQVDKNAKQAGLEGRYSGGSVNADAVDTGAGEGLSVTEPVSRARVSSVARKTNETDIE LSFGVDGTGVSELETDVPFLNHMLDLFAKHGQFDLKVQARGDVDIDDHHTVEDIGICLGQ TLREALGDKKGIKRYASVFIPMDEALAQVIIDVSNRPHFEYRAEYPSQQVGSFTTELVHE FLWKFALEARITLHVIVHYGRNTHHMVEAVFKALGRALDEATSIDPRVKGVPSTKGVL >gi|333603011|gb|AFDH01000139.1| GENE 17 15545 - 16162 642 205 aa, chain + ## HITS:1 COG:BH3580 KEGG:ns NR:ns ## COG: BH3580 COG0118 # Protein_GI_number: 15616142 # Func_class: E Amino acid transport and metabolism # Function: Glutamine amidotransferase # Organism: Bacillus halodurans # 1 203 1 210 214 233 56.0 2e-61 MIAIIDYGMGNLHSVSKAVERLGCESTVTSDPEILAEADGLILPGVGAFGDAMEQLRSLG LDRLLREQTTQGKPLLGICLGMQLLFTSSEEYGEHEGLNLLPGQVVRFQGDYKVPHMGWN RLEFKQGSPLLEGLEEGHVYFVHSYHVKPERQEDLLAVTDYHQPVTAVVGRGSVFGMQFH PEKSGELGMRLLQNFVGLCQSKVGV >gi|333603011|gb|AFDH01000139.1| GENE 18 16205 - 16930 838 241 aa, chain + ## HITS:1 COG:BH3579 KEGG:ns NR:ns ## COG: BH3579 COG0106 # Protein_GI_number: 15616141 # Func_class: E Amino acid transport and metabolism # Function: Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase # Organism: Bacillus halodurans # 3 239 4 241 244 289 63.0 3e-78 MSFIIYPAIDIRDGKCVRLVQGDYNQETVYNENPLEVAQAWEAQGGQWIHLVDLDGAKAG RPVNDKLIGEIARTVKVPVQVGGGLRTEEDVDRLLSLGVSRVILGTAAIEDRAFVQSLLA KHGENVAIGLDARDGFVATRGWLETSSVKAEDLAVQLAEHGAKTFIFTDISRDGMMGGPN VEAIVRLAKVSGRTVIASGGVSRPEDLERLAAEAANGVGGAIVGKALYTGSIRLEEALKL V >gi|333603011|gb|AFDH01000139.1| GENE 19 17028 - 17786 772 252 aa, chain + ## HITS:1 COG:aq_181 KEGG:ns NR:ns ## COG: aq_181 COG0107 # Protein_GI_number: 15605750 # Func_class: E Amino acid transport and metabolism # Function: Imidazoleglycerol-phosphate synthase # Organism: Aquifex aeolicus # 1 252 1 250 253 327 64.0 1e-89 MLAKRIIPCLDVKDGRVVKGVNFVNLRDAGDPVELASIYDREGADELVFLDISASVEGRA TMVEVVKKTAGEITIPFTVGGGISTTDDMKHLLRAGADKIGINTAAVKNPQLVSDGARKF GSQCIVVAIDAKFNPAWGEWEVYTHGGRTASGIRAVEWAKRMETAGAGELLLTSMDADGT KDGFDLALTKAVSGFVGIPVIASGGAGNEEHFYEVFTEGRADAGLAATIFHYKELTVQGV KESLKNKGVEIR >gi|333603011|gb|AFDH01000139.1| GENE 20 17783 - 18460 741 225 aa, chain + ## HITS:1 COG:BH3577_1 KEGG:ns NR:ns ## COG: BH3577_1 COG0139 # Protein_GI_number: 15616139 # Func_class: E Amino acid transport and metabolism # Function: Phosphoribosyl-AMP cyclohydrolase # Organism: Bacillus halodurans # 4 103 1 100 117 156 67.0 3e-38 MTGIQLDSIRYDSQGLVPAIVQDAISKDVLMLAYMNKESLEKTVATGTTWFWSRSRQELW NKGATSGHTQRVVSLRYDCDADTLLVLAEQTGPACHTGSYTCFGSEIPVAGADSAETGEP AAVTASADRFGILSRLESVIASREAERPEGAYTTYLFEKGIDKILKKVGEETAEVIIAAK NRDHDELRYETSDLIFHLMVLLRESKLPLDDVMAELERRHMSKSK >gi|333603011|gb|AFDH01000139.1| GENE 21 18780 - 19730 826 316 aa, chain + ## HITS:1 COG:BS_prs KEGG:ns NR:ns ## COG: BS_prs COG0462 # Protein_GI_number: 16077119 # Func_class: F Nucleotide transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoribosylpyrophosphate synthetase # Organism: Bacillus subtilis # 5 311 9 316 317 330 51.0 2e-90 MDLNNIKIFSGSSNPKLAQSICDDLGVPLGKIKLSRFKSGEIYCLYEEGVRNCDVFLVQT FSHPINEHLMELLVMMDAAKRASARTINLILPYYGYSRQERKAAPREPISAKLVADLVSA AGANRVITIDLHAPAIQGFFDIPVDHLTALDLISDYITKKNIVDPVIVSPDAGRATTAER LANILDAPFAMMFKKRPAHNEAVVTHVIGDVKGRTPIIIEDLIDTGTTIVNVVEGLKERG ANDIYVCATHAVFSGPALQRLDHPNIREVVITDSLAIPDDHAERFKVLSVAPLLSHAVRI VSDGGSLSSLFKYGGV >gi|333603011|gb|AFDH01000139.1| GENE 22 19803 - 21554 1470 583 aa, chain + ## HITS:1 COG:BH3572 KEGG:ns NR:ns ## COG: BH3572 COG0457 # Protein_GI_number: 15616134 # Func_class: R General function prediction only # Function: FOG: TPR repeat # Organism: Bacillus halodurans # 14 322 11 321 358 194 35.0 3e-49 MEKKKRVSVKPEPKIIPISMDATFFFERAVQSLDRFHYDKALKYFRRAVEYEYDNPVNHC NLAGVLSELGKYEESNDILKDVLDRIDPSMTECYFYMANNYANMDQYEQAEGALVRYLEN DTNGHYLEEAEEMLDFLSYELERPAKLKTIKSREGLYEHDQARLLLEEGKFAEAVRVLEE LVEEHGDFLAARNNLALAYYYTGHFQKSLDAIVEVLNIDPGNLHALCNMAIFYQHLGRKE ELAELMGTLRKTYPFQQEHVFKLATTMGILGDHEKAYQLFRRVSRSNDSGLDPCVYHYAA VAACNIGRFQEARVLWNQVDKLENGSEIARFYLEQLNRRSDDRPLSLSYHYNLPFEEQFR QLEQSPESIPDQIAKDPLVRSSFFWALRHGDVETKLQVLQTFVYIGDNEVKEALIEFIGD PKEDDYLKKVAIFVLRTIGVEEPLKAHLDGAVKTVENSVHTTDLPKWEPKWQTVMETAHR HMHQRYDMIQQHDLQTLWVEYLSRVYPSVPRITKVEGWSAALEYLVAKMHRRSISYHEVA SRYHTTVSTVSKNVKLIDEACGLKEKMDAILPKLWNVEKKGRD >gi|333603011|gb|AFDH01000139.1| GENE 23 21687 - 22634 885 315 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 [Streptococcus pneumoniae SP6-BS73] # 1 304 1 304 306 345 56 2e-94 MYKTIVVGTGPSGLTAAIYLARANLNPLVIEGPEPGGQLTTTTEVENFPGFPEGIMGPEL MANMRKQAERFGAEFKTGWVNSVELTERPFKLNVEGLGEIETESLIISTGASAKLLGITN ERENIGRGVSTCATCDGFFFRGKKIIVVGGGDSAMEEANFLTRFASEVRLVHRRSELRAS KIMQDRARENEKITWSLNSTPLEVVAGDKGVTGLKVLNNETGAEEVLETDGIFVAIGHTP NTKFLGGQITTDETGYILVKPGTTETNIPGVFACGDVQDLKYRQAITAAGSGCMAALDCE KFLEGHMVHDWSQSL >gi|333603011|gb|AFDH01000139.1| GENE 24 22807 - 23754 576 315 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|116517028|ref|YP_816079.1| glucokinase [Streptococcus pneumoniae D39] # 1 314 1 318 319 226 41 1e-58 MTQRIYVGVDLGGTSIKVGLCDEEGKLIQTYEGPTGAEHGPDFVLDRIVEYVHRIVDESP YEWEQVAGIGAGIAGFMDIPTGFVELSPNLGWRNVAVKKTLEEKLGKTVKIDNDANVAAL GEAWGGAGRGIPNLVCYTLGTGVGGGIIINGKIYQGFNGMAGELGHMSVVPDIEAIACNC GQSGCLETVSSATGIVRMANDAKERGDRTSLALIEKITAKDVFDAAKSGDEVAVRIVNRA AYYIGKSMAAVAVTVNPQRFIIGGGVSKAGEILFNPIRETFRKLTPERAYTGVEIVPATL GNNAGIVGAAGLNLH >gi|333603011|gb|AFDH01000139.1| GENE 25 23822 - 24709 759 295 aa, chain + ## HITS:1 COG:BH3569 KEGG:ns NR:ns ## COG: BH3569 COG1660 # Protein_GI_number: 15616131 # Func_class: R General function prediction only # Function: Predicted P-loop-containing kinase # Organism: Bacillus halodurans # 5 294 4 293 295 372 62.0 1e-103 MEESKAAAKLVIITGMSGAGKTIAVQSLEDLGFFCVDNLPPVLIPKFAELIEQSHGKIGK VALVIDLRGREFFTALQESLRSIKEDYTLTYEILFLDATDSTLVQRYKESRRRHPLAPND APLEGILLERKLLEELKGHASQVIDTSALKPAQLKQKIASRFTNMGSGGISINVISFGFK YGIPIDADLIFDVRFLPNPHYVETLRPNTGQDADVYDYVMKWNETQEFLTKLLDMLHFLV PQYKKEGKSQVVVGIGCTGGKHRSVAIAEYLGKVMGNSETEIVRVNHRDAERDRP >gi|333603011|gb|AFDH01000139.1| GENE 26 24722 - 25708 823 328 aa, chain + ## HITS:1 COG:BS_yvcK KEGG:ns NR:ns ## COG: BS_yvcK COG0391 # Protein_GI_number: 16080529 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 11 321 19 330 331 357 57.0 3e-98 MSKVYRPADIPRIVVIGGGTGLSVMLRGLKQKPLDITAIVTVADDGGSSGILRSELQIPP PGDIRNVLTALADVEPLLSEMLQYRFPAGTGLAGHSLGNLILAAMKDITGDFVTGIREMS RVFAVRGRVLPASRQELYLRALMEDGTIVEGESKIPLAGGRIKRVMLEPADIEPLEEAIE AIREADAILCGPGSLYTSILPNLLVPGIAEEILKSDAVKMFICNVMTQPGETDDYSVGDH LTAIHNHIGHHLFDYVIVNNGEIPPQVQNKYAEKGAKAVHLDLDEVTKRGYRVIADKLVL FRTYLRHDADKLSEHIYQIVESWMLRKR >gi|333603011|gb|AFDH01000139.1| GENE 27 25715 - 25912 283 65 aa, chain + ## HITS:1 COG:BS_yvcL KEGG:ns NR:ns ## COG: BS_yvcL COG1481 # Protein_GI_number: 16080528 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 63 1 63 316 84 69.0 4e-17 MSFAAQTKKELTLIEAEDCCEKAELSALIRMNGSVQLTNQRVILDISTENAAIARRIYSL LKKAV >gi|333603011|gb|AFDH01000139.1| GENE 28 25872 - 26657 508 261 aa, chain + ## HITS:1 COG:BH3567 KEGG:ns NR:ns ## COG: BH3567 COG1481 # Protein_GI_number: 15616129 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 5 257 58 311 320 337 66.0 1e-92 MPGGFTLCLKKRYKLHTELLVRKKMRLKKNNVYIVRVPNQVQELLSDLYIVSEGFQFTPG IDKSIVKTNCCRRAYLRGAFLAGGSVNNPEGSSYHLEIASMYEEHCQALCQLANRFDLNA RCIERKKGFVFYIKEGERIIEFLSIIGAHQALLRFEDVRIMKDMRNSVNRIVNCETANLN KTIGAAVRQIDNIRLIEREVGLESLPEKLREVAEIRVKHPDLNLKEVGDMLKGSVSKSGV NHRLRKIDELADKIRNGAAIR >gi|333603011|gb|AFDH01000139.1| GENE 29 26927 - 27196 273 89 aa, chain + ## HITS:1 COG:BH3566 KEGG:ns NR:ns ## COG: BH3566 COG1925 # Protein_GI_number: 15616128 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, HPr-related proteins # Organism: Bacillus halodurans # 1 84 1 84 84 92 64.0 1e-19 MSRRPVVVKLKTGLHARPAALFVQEANKFSSEIFVEKDEKKVNAKSIMGIMSLAISTGTE IYISAEGSDAEQAVNALVTLVSKEELENQ >gi|333603011|gb|AFDH01000139.1| GENE 30 27348 - 29105 2023 585 aa, chain + ## HITS:1 COG:no KEGG:Deima_1047 NR:ns ## KEGG: Deima_1047 # Name: not_defined # Def: copper amine oxidase-like domain-containing protein # Organism: D.maricopensis # Pathway: not_defined # 9 579 6 553 571 248 29.0 4e-64 MIQWKKEVSLLMALVLFAAFLMPIQARAISSSSSLIVLYLDNKQAFVNEDQVELESPATI IKDKTFVPAKFIGDSLGFPVTWDNAARTITMQPPGYNIVLSSDLKKAYINGEEVPFDSVA AIVKGKLLVKLTWVADYMGAKYTYYHESRKVEIVYVPKPEGIYDNGANNSNPVAKFTTHK EKYRLGETVKYIDLCYDPDAEGIAKYEWTGKQDAFFKPGSYPVSLKVYDRHGHVSKVFTK NVIVEDIPLVSEAEYPVYHNEIGSFYKLSWDTLTSHFYNLPMLPKEATNVPGRKLLVSDS PEEFTEPGILYQDMINGKGRLYADHINGTKNKVTFAIMATNTTDKPVTVKTTNKGEVWPS VYANLIGSEASVDFLLGNTYNEKLTIPPHDTLVYRQLPDFYPGQGVNLFYDLETSGEVQF SFLAADELTNTTLSESKLLGFTGHVRGSFDVSEVNWNIDASSFTKASKLVIGDGKTDPFV DGYDVMRKENVKNGGNYGVVYKIHADKPRKMAIMLLARGGVFKGPIKINGEIQSIPYSGV ITAFDGMQILHRTTGTEKSLDIEFTPPAGSAFPIDLIFYPLADLD >gi|333603011|gb|AFDH01000139.1| GENE 31 29189 - 29791 718 200 aa, chain - ## HITS:1 COG:BH3564 KEGG:ns NR:ns ## COG: BH3564 COG0740 # Protein_GI_number: 15616126 # Func_class: O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Protease subunit of ATP-dependent Clp proteases # Organism: Bacillus halodurans # 1 193 1 193 194 304 79.0 7e-83 MSFIPMVVEPDARGERAYDIYSRLLKDRIIFLGTPVNDQVANAIIAQLLFLDAQDPDKDI HLYINSPGGSITAGMAIYDTMQFIKSDVSTICVGMAASMGAFLLAAGAKGKRYALPNSEV MIHQPLGGAEGQATDIEIRARRILKMRENLNKILAERTGQPLERIDKDTDRDYFMSAAEA SAYGLIDKVIEKTTEGGKEA >gi|333603011|gb|AFDH01000139.1| GENE 32 29951 - 30064 152 37 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MHPQSPLYVKVVKKSTGYTHKLTEGLVPATTKVQFPN >gi|333603011|gb|AFDH01000139.1| GENE 33 30147 - 30797 230 216 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|223039927|ref|ZP_03610210.1| ribosomal protein L22 [Campylobacter rectus RM3267] # 1 198 6 203 208 93 25 2e-18 MEWISDLFAQYGYLVLFLGLFAESVALPFPGELAMMISGHMVHVNTFNMAGVMGVSFAGA FAGTIFTYVLGRKLGTPFFDKYGRYVLLNPDRLLKIKKWFDKYGDKIILVSYFVPGLRHF TGYVSGILKIRLKTFLIFNGLSGVLWVFTYVMVGFLFGTKIQQLLHVIAQYSTIAIIIAA IALTGFLVVKRNKEAVLGWLRARYAGIQKMFMGSAE >gi|333603011|gb|AFDH01000139.1| GENE 34 31184 - 32212 1165 342 aa, chain + ## HITS:1 COG:BH3561 KEGG:ns NR:ns ## COG: BH3561 COG2390 # Protein_GI_number: 15616123 # Func_class: K Transcription # Function: Transcriptional regulator, contains sigma factor-related N-terminal domain # Organism: Bacillus halodurans # 1 338 1 338 339 305 46.0 7e-83 MRDILDVQKQLLPDLLEVLNKRYTVLQHIFLLGSVGRRTLAGALDMTERVLRSEVEFLKG QGLIETETSGMRISESGRELLEKLQPLIKEMLGLNELEKRIRDHFRLEQVVVVPGDSDSS LFAKKELGRAAALMLRKHVTKHDVIAVTGGSTMAEVAEHLSTTSALKGSLFVPARGGLGE SVELQANMIASKMAKKTGGQYRLLHVPDHLREEAYQSLIQEPNIQEMMDVVRSSRIVIHG IGDAIVMAQRRKVDSETIDSLRGEGALAEAFGYYFNPEGKVVHKMPTVGLRLEDIQHCEV VIGVAGGKSKGAAVASVLKYGQEDILVTDEAAAVEMLNYTLS >gi|333603011|gb|AFDH01000139.1| GENE 35 32264 - 32939 538 225 aa, chain + ## HITS:1 COG:BS_gap KEGG:ns NR:ns ## COG: BS_gap COG0057 # Protein_GI_number: 16080447 # Func_class: G Carbohydrate transport and metabolism # Function: Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase # Organism: Bacillus subtilis # 2 225 3 226 335 334 76.0 9e-92 MVKVGINGFGRIGRNVFRAALNNAEVEIVAINDLTDVSTLAHLLKYDTTHGRLNATVEAG EGELKVNGKSIKVFAERDPGNLPWAEYGVEIVVESTGIFTDKAKAESHLKGGAKKVIISA PATNEDITVVMGVNEEKYDPSAHTVISNASCTTNCLAPFAKVLDEKFGIVKGMMTTVHSY TNDQQVLDLPHKDLRRARAAAENIIPSTTGAAKAVSLVLPQLKGK Prediction of potential genes in microbial genomes Time: Sun Jul 17 11:01:07 2011 Seq name: gi|333602609|gb|AFDH01000140.1| Paenibacillus sp. HGF7 contig00121, whole genome shotgun sequence Length of sequence - 68848 bp Number of predicted genes - 61, with homology - 59 Number of transcription units - 32, operones - 14 average op.length - 3.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 5/0.000 - CDS 3 - 2205 1218 ## COG1305 Transglutaminase-like enzymes, putative cysteine proteases 2 1 Op 2 23/0.000 - CDS 2192 - 4027 806 ## COG1721 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) 3 1 Op 3 . - CDS 4040 - 5020 885 ## COG0714 MoxR-like ATPases 4 1 Op 4 . - CDS 5093 - 6463 1200 ## COG0726 Predicted xylanase/chitin deacetylase - Term 6536 - 6573 6.0 5 2 Tu 1 . - CDS 6611 - 7381 767 ## COG3541 Predicted nucleotidyltransferase - Prom 7519 - 7578 2.5 + Prom 7308 - 7367 4.6 6 3 Tu 1 . + CDS 7544 - 8704 1183 ## COG0673 Predicted dehydrogenases and related proteins + Term 8758 - 8813 -0.9 7 4 Tu 1 . - CDS 8886 - 9350 573 ## COG1225 Peroxiredoxin - Prom 9386 - 9445 4.8 - Term 9437 - 9475 8.3 8 5 Tu 1 . - CDS 9522 - 10259 936 ## GYMC10_0772 hypothetical protein - Prom 10299 - 10358 3.5 9 6 Op 1 3/0.000 - CDS 10412 - 11197 909 ## COG3694 ABC-type uncharacterized transport system, permease component 10 6 Op 2 5/0.000 - CDS 11201 - 11995 901 ## COG4587 ABC-type uncharacterized transport system, permease component 11 6 Op 3 . - CDS 11988 - 13070 1180 ## COG4586 ABC-type uncharacterized transport system, ATPase component - Prom 13188 - 13247 4.9 + Prom 13111 - 13170 3.8 12 7 Tu 1 . + CDS 13384 - 14454 933 ## COG1316 Transcriptional regulator + Term 14462 - 14509 13.1 13 8 Tu 1 . + CDS 14579 - 15889 1386 ## COG0001 Glutamate-1-semialdehyde aminotransferase - Term 16138 - 16179 7.1 14 9 Op 1 7/0.000 - CDS 16192 - 17958 1830 ## COG2972 Predicted signal transduction protein with a C-terminal ATPase domain 15 9 Op 2 2/0.000 - CDS 18001 - 19572 1601 ## COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain - Prom 19605 - 19664 2.2 - Term 19589 - 19625 5.0 16 9 Op 3 14/0.000 - CDS 19666 - 21306 1785 ## COG1653 ABC-type sugar transport system, periplasmic component - Prom 21326 - 21385 2.9 17 9 Op 4 7/0.000 - CDS 21397 - 22293 1030 ## COG0395 ABC-type sugar transport system, permease component 18 9 Op 5 . - CDS 22319 - 23287 806 ## COG4209 ABC-type polysaccharide transport system, permease component - Prom 23383 - 23442 5.5 - Term 23402 - 23457 14.1 19 10 Op 1 . - CDS 23499 - 24518 1017 ## COG0502 Biotin synthase and related enzymes - Prom 24558 - 24617 6.2 - Term 24715 - 24758 10.1 20 10 Op 2 . - CDS 24791 - 25549 817 ## COG1082 Sugar phosphate isomerases/epimerases - Prom 25630 - 25689 2.6 + Prom 25603 - 25662 5.0 21 11 Tu 1 . + CDS 25721 - 26614 780 ## COG2207 AraC-type DNA-binding domain-containing proteins + Term 26650 - 26691 10.3 - Term 26624 - 26689 18.5 22 12 Op 1 . - CDS 26875 - 27498 731 ## - Prom 27520 - 27579 2.4 - Term 27541 - 27580 8.2 23 12 Op 2 . - CDS 27662 - 28522 1068 ## COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family - Prom 28544 - 28603 2.1 - Term 28561 - 28600 -1.0 24 13 Op 1 . - CDS 28666 - 29160 235 ## GYMC10_5345 hypothetical protein 25 13 Op 2 . - CDS 29160 - 29987 774 ## GYMC10_5347 hypothetical protein - Prom 30023 - 30082 4.6 - Term 30065 - 30131 3.5 26 14 Tu 1 . - CDS 30195 - 30971 1021 ## COG0623 Enoyl-[acyl-carrier-protein] reductase (NADH) - Prom 31004 - 31063 3.4 27 15 Tu 1 . - CDS 31193 - 32194 843 ## COG4294 UV damage repair endonuclease - Prom 32272 - 32331 4.7 - Term 32301 - 32360 2.9 28 16 Tu 1 . - CDS 32407 - 32730 289 ## GYMC10_0869 hypothetical protein - Prom 32766 - 32825 1.9 29 17 Op 1 . - CDS 32895 - 34061 1276 ## COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes 30 17 Op 2 . - CDS 34068 - 35090 920 ## GYMC10_0867 hypothetical protein - Prom 35153 - 35212 7.1 + Prom 35188 - 35247 9.0 31 18 Tu 1 . + CDS 35358 - 38066 2771 ## COG1048 Aconitase A + Term 38100 - 38129 2.1 - Term 38666 - 38713 0.7 32 19 Tu 1 . - CDS 38722 - 39678 1051 ## COG0053 Predicted Co/Zn/Cd cation transporters - Prom 39702 - 39761 1.7 - Term 39883 - 39920 4.1 33 20 Tu 1 . - CDS 40108 - 40848 698 ## COG1414 Transcriptional regulator - Prom 41059 - 41118 8.3 + Prom 40854 - 40913 5.6 34 21 Op 1 . + CDS 41146 - 42159 932 ## COG1073 Hydrolases of the alpha/beta superfamily 35 21 Op 2 . + CDS 42228 - 44042 351 ## PROTEIN SUPPORTED gi|15900660|ref|NP_345264.1| superoxide dismutase, manganese-dependent + Term 44118 - 44163 3.6 - Term 44106 - 44151 -0.2 36 22 Tu 1 . - CDS 44312 - 45097 797 ## COG1349 Transcriptional regulators of sugar metabolism - Prom 45135 - 45194 4.1 37 23 Op 1 . - CDS 45324 - 46508 1222 ## COG1748 Saccharopine dehydrogenase and related proteins 38 23 Op 2 2/0.000 - CDS 46574 - 47731 1091 ## COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase 39 23 Op 3 . - CDS 47745 - 48587 752 ## COG0637 Predicted phosphatase/phosphohexomutase 40 24 Op 1 17/0.000 - CDS 48708 - 50468 1940 ## COG1178 ABC-type Fe3+ transport system, permease component 41 24 Op 2 7/0.000 - CDS 50487 - 51530 921 ## COG3842 ABC-type spermidine/putrescine transport systems, ATPase components 42 24 Op 3 . - CDS 51602 - 52708 1238 ## COG1840 ABC-type Fe3+ transport system, periplasmic component - Prom 52830 - 52889 7.4 - Term 52865 - 52926 10.5 43 25 Op 1 . - CDS 53043 - 53630 714 ## COG0302 GTP cyclohydrolase I 44 25 Op 2 . - CDS 53620 - 54228 484 ## COG1309 Transcriptional regulator - Term 54260 - 54304 5.2 45 26 Op 1 . - CDS 54322 - 54564 314 ## Pjdr2_0807 hypothetical protein 46 26 Op 2 . - CDS 54643 - 55296 747 ## COG2206 HD-GYP domain 47 26 Op 3 . - CDS 55332 - 55673 414 ## BBR47_21830 hypothetical protein 48 26 Op 4 1/0.000 - CDS 55670 - 56266 541 ## COG0350 Methylated DNA-protein cysteine methyltransferase 49 26 Op 5 . - CDS 56340 - 57587 1052 ## COG1600 Uncharacterized Fe-S protein 50 27 Tu 1 . - CDS 57740 - 58123 250 ## COG0681 Signal peptidase I - Prom 58211 - 58270 1.9 51 28 Tu 1 . - CDS 58350 - 58901 615 ## COG3557 Uncharacterized domain/protein associated with RNAses G and E - Prom 58980 - 59039 2.1 - Term 59096 - 59155 3.1 52 29 Tu 1 . - CDS 59182 - 59613 298 ## COG0456 Acetyltransferases - Prom 59648 - 59707 7.1 - Term 59880 - 59915 6.5 53 30 Op 1 1/0.000 - CDS 59996 - 61318 1423 ## COG1486 Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases 54 30 Op 2 . - CDS 61341 - 62303 1185 ## COG2971 Predicted N-acetylglucosamine kinase 55 30 Op 3 6/0.000 - CDS 62357 - 63385 851 ## COG1609 Transcriptional regulators 56 30 Op 4 14/0.000 - CDS 63449 - 64828 1642 ## COG1653 ABC-type sugar transport system, periplasmic component 57 30 Op 5 38/0.000 - CDS 64860 - 65744 956 ## COG0395 ABC-type sugar transport system, permease component 58 30 Op 6 . - CDS 65741 - 66634 891 ## COG1175 ABC-type sugar transport systems, permease components - Prom 66661 - 66720 4.9 + Prom 66946 - 67005 1.8 59 31 Op 1 . + CDS 67052 - 67240 320 ## + Prom 67243 - 67302 4.7 60 31 Op 2 . + CDS 67335 - 67949 637 ## PROTEIN SUPPORTED gi|15900660|ref|NP_345264.1| superoxide dismutase, manganese-dependent + Term 67965 - 68011 16.3 61 32 Tu 1 . - CDS 68316 - 68846 480 ## GYMC10_0847 A/G-specific adenine glycosylase Predicted protein(s) >gi|333602609|gb|AFDH01000140.1| GENE 1 3 - 2205 1218 734 aa, chain - ## HITS:1 COG:lin0469 KEGG:ns NR:ns ## COG: lin0469 COG1305 # Protein_GI_number: 16799545 # Func_class: E Amino acid transport and metabolism # Function: Transglutaminase-like enzymes, putative cysteine proteases # Organism: Listeria innocua # 298 404 238 328 721 63 37.0 2e-09 MQSVKKPLISPYKAADSGTYSDRNQAAGRLAENEKQGEISWVRDAALTVIWYMLLLEWLS PLALGSAEFQPFGITPYAVMFGYFLLISAGVRSFTLLWTLKLAGIAAVSGYQFQKELFPF GPWPVRLWETFLTDLDYMASGQLGALSGLTESLLFLFGAAAFISASHQLLLHRQNGAWFA AATGGYLMLLQVGLGIDTTPGLIRTGALGLLLLAGLTVPRLRRQFGIAATGRGGSLPWMG ISVLAAAVFYAAGTWAAGEAGSAAKMKPLSLSAAADKWAALTRGHTGSGADQANGSSSSL RISGYGTDDSVLGGALISDNRVVFTARTPVLAYWRGEAKSVYDGRGWSQPSGTLRPAFPA LPGQTESAGRDAFSTGGASPAEAKAGAAADNGQPAEGSNTASADRKASDAAAVKGPYTQE VTGISGQLGMQLFAGGEVLKLEEAKNISGQSVKPETLWLNNESGKVALPVTDDPLQSYRV TVKPFAFGSGWSMPDPGPQASTFMPVSDAEIRSGLRSSGLGAGNGGDGRGNRAVDKNASG MGTAGGGSGSSNRGGNASGTGTTDDYSGAANGSPGAGGTNVSGRGSAGEHSDTVSGSETN AGSVSRPGPEANGANADRTGSAGEQSGTADSSEVNAAADIPISAAGGNGSRSETVGAEAG SPGRNTQAPAAHAEPEPAELGAYLQLPDRLPQRVRDLAERVTAGSGQDRLAAALALERYL RTEYRYSMDKPTLP >gi|333602609|gb|AFDH01000140.1| GENE 2 2192 - 4027 806 611 aa, chain - ## HITS:1 COG:BH0605 KEGG:ns NR:ns ## COG: BH0605 COG1721 # Protein_GI_number: 15613168 # Func_class: R General function prediction only # Function: Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) # Organism: Bacillus halodurans # 46 223 55 232 385 71 29.0 5e-12 MKTWLNLAGTVAGAVGAHVLYLAAGGLAPLIIECLLWANAVSGASVLFFTLNGAEVSRRL GAPRLFAGQNAEVKLEVTQRSLLPVCWMVVREHWVHEGREESSCKSLLCFPWTAPTFSLS YSLEDVGRGQYVLERTELLCGDLFGLFTKRRVVKTEAAFTVYPAPESFGLRGVPGTESES RGKPSRHLRTTGVSAGIRVYAEGDPMSWIDWKATARTGSLQTQVHSGMVKPSRIIVLDTE PGCGGADTGCECVHSAGKGAKGGKSASSAKKGKNGRKGWNGTSRESDRSGESGQGEKLGS LTGTLVPNSADRNYPARTDGHPQADRRLAFGKSKHIRGKHSASGPCGLGQAMLEKRIRLA AYAVLEPDTGTGGIVTGTSFRERAVLAQSAQPYSFPGFQGVSSFNPDNGASAPVASAPLE LLAAVRGETGKGIHMLRKEHASRGPGVTLLYLTSRLDEALIVCAMELLAARRPLQIVYVS QSPMLTSQEQKRLSVLREAGVEAACFAATEDRAAEASAAGYGQSAKNSGSAVNKRTFFMK KHKAKRMKVPASADNSARIQEMERVGSNAYPGVVSRSSGSADFFNEHSSVPHRIAGDQEK PKEGGAEDAIG >gi|333602609|gb|AFDH01000140.1| GENE 3 4040 - 5020 885 326 aa, chain - ## HITS:1 COG:lin0471 KEGG:ns NR:ns ## COG: lin0471 COG0714 # Protein_GI_number: 16799547 # Func_class: R General function prediction only # Function: MoxR-like ATPases # Organism: Listeria innocua # 11 319 4 312 315 313 51.0 2e-85 MISNRTFLFDQPHTLLQKVVDQVAKVVVGKRDVIEKSVIAMLCGGHVLLEDVPGVGKTLL VRSLAATVGCGCKRIQCTPDLMPSDITGVSVFRPQTAAFEFRPGPIMNPVVLADELNRAL PRTQAAFLEAMEERSVTVDGVTYELPKPFLLLATQNPLDHEGTYPIPEAQLDRFLMKLSL GYPEHGDEVGMLEQQLQRRSPDSLRPVLLQEEWVQLQNEAATVNVDESLREYIVSLAGAT RRHPDLRLGASPRASAALMRAAQARALMQGRRYVVPDDIKCLAVPVFAHRLLPSTDALIG GRTPQAAVEAAVASVPIPVLRFAAVR >gi|333602609|gb|AFDH01000140.1| GENE 4 5093 - 6463 1200 456 aa, chain - ## HITS:1 COG:alr1793 KEGG:ns NR:ns ## COG: alr1793 COG0726 # Protein_GI_number: 17229285 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted xylanase/chitin deacetylase # Organism: Nostoc sp. PCC 7120 # 67 262 98 290 290 129 37.0 1e-29 MLKTKLSHFRFTRIVLILLLIFVVFPSVQPAYRAYAAEADGDPAESIYEALISGQKVASD RPYAVPDKPTVYLTFDDGPSKYTPEVLDILRKEGISATFFVVGEHVEENPKMVKRIVSEG HALGNHSYDHTYKKLYSDYKGFWKQVEQTDRAIEKAAGFRTGLMRAPGGTAENFDAFYFY YMKEAGYTLFDWDIDSEDSKRTGVPAAEIIRSIRKAPLKHELTVLFHDGTGHKETVKALP EVIRYFRDKGYAFARLDDQVKPAQFPVRKAGRWHRSAPGEAEFARTAAAMRDWAATATAS GGRTTVPSGEEAAVGAGSIRPRQAEPQLPLTLIVDGRRTVLPPEQALFREERLEVPLRVL AQQMGAKVSWDQATSTAGVDYGFTRLDYNLRDYTLSVRLWAGVTAVYHLPNMRLLDGSLY VPLRKTVELLGSDILDYHADESGREVTISGGTALFS >gi|333602609|gb|AFDH01000140.1| GENE 5 6611 - 7381 767 256 aa, chain - ## HITS:1 COG:BS_ycgL KEGG:ns NR:ns ## COG: BS_ycgL COG3541 # Protein_GI_number: 16077388 # Func_class: R General function prediction only # Function: Predicted nucleotidyltransferase # Organism: Bacillus subtilis # 1 256 1 256 260 269 54.0 3e-72 MEAVIREKLKEIEENEQVKVLFAIESGSRAWGFPSRDSDYDVRFVYVRRPEWYLSIDDKR DVIEVPINEMLDINGWDIRKALKLFRKSNPPLMEWLISDIVYQEAYGFKEEMLRLRSEVF SPKASLHHYLSMAKGNFREYLQRDQVRIKKYFYVLRPILACKWIEENDTNPPILFQELVD RLLPESGLKDQINELLRRKIAGEELDLEARVEEIHAFIGREIEHLTKVAAASTAELTDPT PLLDDVYRRYLTLVWK >gi|333602609|gb|AFDH01000140.1| GENE 6 7544 - 8704 1183 386 aa, chain + ## HITS:1 COG:CC1630 KEGG:ns NR:ns ## COG: CC1630 COG0673 # Protein_GI_number: 16125876 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Caulobacter vibrioides # 57 346 67 338 376 141 29.0 2e-33 MGDIKVGVIGTGFSAMAHIEALQRVPSVQVVAIASSRLSHAEEAAARYRIPMYYGDAMEL IQDPDIDVVHNCTPNHLHYTFNKAALLAGKHVLSEKPLSVTVEESDELQKLAREKGLVAG VAFIYRHYPLVEEIKQQIASRTYGKPHYVLGGYLQDWLLYETDYNWRMDSRLNGPSRAVA DIGSHWCDTVQYVLGTRIVSVFADLGIVHPVRYKPKDERATFTNAAPKPEDCERVEVDTE DFGSILVRFEDGTKGVFCISQVSPGRKNKLYFEISAEKGALRWDQEEANRLWIGSRDVPN QIQMRDASLMSSQAASITHYPGGHEEGWPDALKNLLLDYYSLIGKRRARQTDETSSKFAT FNQACGIMRIVEAVLQSHERQRWVDV >gi|333602609|gb|AFDH01000140.1| GENE 7 8886 - 9350 573 154 aa, chain - ## HITS:1 COG:BH0948 KEGG:ns NR:ns ## COG: BH0948 COG1225 # Protein_GI_number: 15613511 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peroxiredoxin # Organism: Bacillus halodurans # 6 154 4 152 154 223 69.0 1e-58 MSINTGHQAPDFELPANNGQQVKLSDFKGKKVVLYFYPKDMTPACTTQACDFRDKHTEFE SLNAVILGVSTDSLKRHEKFIDKYSLPFLLLADEDHAVAEIYGVWKEKSMYGKTFMGIER STFLIDEEGILIKEWRKVKVKGHIEEALAYLKEN >gi|333602609|gb|AFDH01000140.1| GENE 8 9522 - 10259 936 245 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_0772 NR:ns ## KEGG: GYMC10_0772 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 245 1 257 257 98 35.0 2e-19 MNKTRSKLMVSTLAAALLLGGGAALSSQVFAADSTDSGQASTQQSAPFKHDGKDRKPFGQ FGGPGSYLKDAAAVLGLEENALITELKAGKSLAQLAEAKGISQADLVKKLVEASTKEIDA KVTEGKIDSTKATELKANLEQRIEKAVMVTGMQNFKGGKHGREGGFVDQEKLAAILGITK EELKTQQEAGKTVAEIASAKGITREQLLEKLKTELTPSLEKFIDAKKGDKPQKKNQKQAQ TEQAE >gi|333602609|gb|AFDH01000140.1| GENE 9 10412 - 11197 909 261 aa, chain - ## HITS:1 COG:SP0638 KEGG:ns NR:ns ## COG: SP0638 COG3694 # Protein_GI_number: 15900544 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 3 261 4 261 261 139 33.0 5e-33 MFYLSLILDYLKNYLKTRLTYRSDFWIEVVSDLLFNGLNLVFILVVFQQTALLGDWNRDQ ILFIYGFFMIPYGLFSTIFNLWNFSERYIVKGEMDRILTRPAHSLWQVMLENMDPASLFS ALAGLVVMIYSWGQLDLPVHWSDPLVMLMMVVSGLLIYGGIYVSLSALAFFSDSPTGIMP LIWNIQNYGRYPVTIYNKLLRGVLTWILPFAFVGFYPAAYFLDPLNWKGFALLTPVVGIV FITIGLSVWNIGVKRYRGAGS >gi|333602609|gb|AFDH01000140.1| GENE 10 11201 - 11995 901 264 aa, chain - ## HITS:1 COG:SPy0519 KEGG:ns NR:ns ## COG: SPy0519 COG4587 # Protein_GI_number: 15674623 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Streptococcus pyogenes M1 GAS # 2 264 5 272 272 112 29.0 7e-25 MYKAYVELIRIRFITMLAYRVNYYSGILVYALNIGSYYFLWKAIYGSQETLGGQTLGQMT TYIVVSWMSRAFYFNNLDREIANEIRDGSVAIQFIRPYNYVVYKMMQGLGEGLFRFLLFT TPGLVIVSLLFPVELPTDISLWLVYLLMLLFAFLINSQINIMTGLSAFFLENSEGMMRMK RVAVDLFSGLILPITMFPGWTAKLLQWLPFQAITYLPGSVITGKMTGSAVWQAVSIQVIW FVALLVPIAFMWHKARTRLFVQGG >gi|333602609|gb|AFDH01000140.1| GENE 11 11988 - 13070 1180 360 aa, chain - ## HITS:1 COG:SP0636 KEGG:ns NR:ns ## COG: SP0636 COG4586 # Protein_GI_number: 15900542 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, ATPase component # Organism: Streptococcus pneumoniae TIGR4 # 1 329 1 327 330 301 49.0 1e-81 MPAIEVRDLRKEFRVQKSRSGLKGAFRDLFDREYNQVTAVKDISFEIPEGEICGYIGENG AGKSTTIKMLTGILVPTSGHLQVNGYIPYKEREAFVKGIGVVFGQRSQLWWDIGVIESFQ LLKKVYRVPENDFKARLDELSDRLQLGELLSRPVRKLSLGQRMRCELAASLLHNPAIVFL DEPTIGLDIVVKTEIREFLKSLNQRYGTTILLTTHDLQDIEALCSRVIMLDDGRIIYDGG LDQLKETWGKGKEVVLQFNDPVPLESLKLLTEGLDVTWEQDSSLDAHVFIPQRSANVSDV LARIVGVVRIADIRILETNTDDIVREIYKSGSAEVRKPSAPEAGEPGSGAEEDKGAVPHV >gi|333602609|gb|AFDH01000140.1| GENE 12 13384 - 14454 933 356 aa, chain + ## HITS:1 COG:lin0463 KEGG:ns NR:ns ## COG: lin0463 COG1316 # Protein_GI_number: 16799539 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 6 293 25 295 309 166 34.0 4e-41 MLIVGIVFALICTAGYFAYSIYSFADNINNKDAIQGFDKKYQGDDYKPPVWEGTGRVNVL LLGADSRGVENGEPPRSDTLMIASIDPVTKKASLMSILRDTWVKIPGNDEGRINSAFTIG GPNLAMKTVSELTGIPIQYYLYTDFKGFIALVDAIGGIDLEVEKDMKYTDAADGHVFDIN LKKGMQHLDGQTALQYVRFRHDAQSDYARTERQRKFLTAVADKMQSTQSILKLPSILKSM EPYINTNLSFGDMLKLGSLAFDARAKGIQSIQLPPENLLIERRIGGAQVLSVDKTKLKRY LDDVFDGMADVPGTGTGTGTDTGTGSGPGSSSSGGSSGSSTSGTAGTSGANKNTRQ >gi|333602609|gb|AFDH01000140.1| GENE 13 14579 - 15889 1386 436 aa, chain + ## HITS:1 COG:BH0943 KEGG:ns NR:ns ## COG: BH0943 COG0001 # Protein_GI_number: 15613506 # Func_class: H Coenzyme transport and metabolism # Function: Glutamate-1-semialdehyde aminotransferase # Organism: Bacillus halodurans # 1 436 1 429 437 615 69.0 1e-176 MNHTRSEKLHEEALQHIVGGVNSPSRSFKAVGGGAPVFMKRAEGAYFWDEDDNRYIDYLA AYGPIITGHAHPHVTEAIVRAARSGTLYGTPTELEITFARMLKEAIPSLDKVRFVNSGTE AVMTTIRVARAYTGRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPASIAKEVI TVPFNDIPALEEALARWGGDIAAVMVEPIVGNFGMVMPKPGFLEGLCAAARANGSLVIYD EVITAFRFHYGTTQTYAGLNSRPEEIEPDLTALGKIIGGGLPIGAYGGRKEVMEQVAPLG PAYQAGTMAGNPASISAGIACLEVLRQPGTYERLEQLGAKLADGLRESASRHGVALTVNR IAGAISTHFCDHPVTNYDEAQDTDGERFGRFFRLMLERGINLAPSKYEAWFLTTAHTDED VARTLQAADEAFRLLG >gi|333602609|gb|AFDH01000140.1| GENE 14 16192 - 17958 1830 588 aa, chain - ## HITS:1 COG:BH2110 KEGG:ns NR:ns ## COG: BH2110 COG2972 # Protein_GI_number: 15614673 # Func_class: T Signal transduction mechanisms # Function: Predicted signal transduction protein with a C-terminal ATPase domain # Organism: Bacillus halodurans # 15 583 16 581 585 152 23.0 2e-36 MKPEERRRFVPFGYKLMLSYALCILVPVIIVGSFAVSTLVKSVREQAESSVQGTMRQIRD NIQYKIEDTRRLTNMIYVDTTLAKHLKHYEEGWVSYDATTSYLLPKMMQTIQSSSLRLWL SVYLHNETLPEVYYNHENIDPLMTVGKLYELYHMNRIENADWYKSFPPERYGTTMQWRQI EDDAKFGRLSLLRRIVDTTNGVELREIGFIRVTAHLQDLFESVDYTKVGEGSAIYIVGPQ GDILYSSAADPNMTGKTWNESWTRNHLVLRQPLEGLEWSVVSLVPTAIMEKDADKVRMLT AIVCLISVLVIFFVGWMFSRFFSKRVTKIVSVLHAFREGEFRKRMAYEGRDEFAQIAAAL NDMGQHTEGLIREVYLTNLQKKEAELESLQAQINPHFLYNTLSSISRLARFGDIDKLHRM VIGLAKFYRLTLNDGRTFIPLSKELEQVQAYVDIQSIKYGDRMEVLFDIQPEVNRYDTVK LIVQPFIENALQHAWCGDHIHIRISGEIIGGDIHLKIIDDGNGIPQDRFRKLFDPLDEVE SGYGIRNVDQRIKLHFGKKYGVSLASRPGIGTAVLLRIPTYKHKKNQG >gi|333602609|gb|AFDH01000140.1| GENE 15 18001 - 19572 1601 523 aa, chain - ## HITS:1 COG:BH1910 KEGG:ns NR:ns ## COG: BH1910 COG4753 # Protein_GI_number: 15614473 # Func_class: T Signal transduction mechanisms # Function: Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain # Organism: Bacillus halodurans # 1 523 1 498 506 166 26.0 1e-40 MYNVLLADDEILDLEGMQTFIPWERLGLHVVGAVNNGFDAVRVMEQEKVDILVTDVRMPS MTGLELARKALERHTGLRVIFVSGHQDFGYVKEALSLKACSYVLKPMDDNELIQSLETII GDLNREQKRRKTERAFEQMRPIVHNEYVFRLLEGTAGRQELDDLLTEEGLEPIRYPIRAA VLETDDLSWKLNPYTAKERQDMLNDFGGQIMDLCRPRGITHMCRITKQRLGLLVTADEKG TKELQEVIAYVKEHFPFTITIGLGNPADDPSALQESYREALAALDAKMFYGKAKIIETRE IPKEEIADAKQLEFRLDALFTAMVQYDLVGIHDEIDRLFNVAVCLRSRFTIHNFATYLIV KLDGYLQTRNEQLFTLLGMELQNLDILLQFETIEDIRSWMRRMLFEISEKLNMGNQSKNR KLIRDMMEYIKERLQENVTLRDVADRFSFSPNYLGHVFKEETGQNFSDYVIALRMEKAKE LLGDPTLKIYEVADRIGYRYLPYFSRQFKETFGMTPMQFRRNH >gi|333602609|gb|AFDH01000140.1| GENE 16 19666 - 21306 1785 546 aa, chain - ## HITS:1 COG:BH2111 KEGG:ns NR:ns ## COG: BH2111 COG1653 # Protein_GI_number: 15614674 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Bacillus halodurans # 6 401 3 402 561 99 28.0 2e-20 MAKWKKGVSLTLITVLSSIAVLSGCSSDGKPAASDSGKQGTTQSTGVKFGEQQLDISFYG NYDWFTMPVWGQDLATKWVKENKKVNVTGVPNGGNSEQKFNTLMASKELPDVIWLERGAQ VEKLRAAGMLVSFDEYLDKYPNLKKWAGEATLNMLRSSDGKLYQFPNWYTQRPAGNAGYM INLKIYKELGEPKLETYDDLYAYLKQVKAKYPEVTPFDSGVQAQNVEIMYPGFANDHPVT NISMRAVPEGNELKSIFADPVYRESLTYSSKLFREKLITQDVLTQTKDQIDEKVNNGKVA VMAASSVTEFGSKGTTALQTKDPSHPGYQMIWPVHKEGVDKTKVFPGHYATLGWNVNVIT KSAKNPEAIFAFLDWMTGEEGQRVMFWGPEGEYWQGVDEKGTPKFTDKYYSDATGRAKLM DSLVNLQWVGNTTYIDTAKTDIELKLPPEKQSWETRNQTQVAWKTVFNRTEFVNLDPPSN TEEGMVQQRIKDIFTESRAKALFAKSDAEVTSILDKAEKDAQAAGYAKLLKYQTERWQEN KKKIGK >gi|333602609|gb|AFDH01000140.1| GENE 17 21397 - 22293 1030 298 aa, chain - ## HITS:1 COG:BH1912 KEGG:ns NR:ns ## COG: BH1912 COG0395 # Protein_GI_number: 15614475 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Bacillus halodurans # 2 297 1 296 297 234 41.0 1e-61 MLRASFGDRFMTVVIYTLLILLAFITLYPFWNSVVISFNSGKDTMLGGITFWPREFTLEN YNVVFEDKRIIQGFLITVSRTVMGTILGILATSIFAYGMSRRDLVFRKYYMVMAVVTMYF TGGLIPSFLLIRGLGLMDTFWVMILPVLINVWNMIIFMTFFRSIPAGLEEAAKLDGCSTW SVFFRIVLPLSGPVIATLGLFTAVQHWNEWFLPSIYLNNTDLYPVQTLLRQILNSNIMSE QLANLDSAALTQLSKMQSITTKSLSMATMVVSTLPVMLIYPFVQKYFSKGVMIGSLKE >gi|333602609|gb|AFDH01000140.1| GENE 18 22319 - 23287 806 322 aa, chain - ## HITS:1 COG:BH2112 KEGG:ns NR:ns ## COG: BH2112 COG4209 # Protein_GI_number: 15614675 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type polysaccharide transport system, permease component # Organism: Bacillus halodurans # 20 320 39 334 337 258 45.0 8e-69 MAQVAVETSVSKEAKSPSIWKRFFKQWDIQLMVLPGIVFLLIFHYIPMYGVLTAFKDYDL FNGFFGSPWVGLKHFKMFFESPDFPRVMRNTIMISLFKLLIAFPAPIILALMLNEVRNKF FKNVVQTVTYLPHFLSWVVVAGFVTSFLSTDNGSLNIAMQKLSMIDEPINFLAIPEYFWT ILISTGIWKDIGFGSIVYLAAIAGIDPALYESASIDGASRFKQIYLITLPCIFPVIIIFL ILAIGSLMNAGANGGYEDILLLSANPVLREYSDVLDTFVYRTGIQNQLFSYATAVGLFKA VISIVLLSGANLLARRTGQSLW >gi|333602609|gb|AFDH01000140.1| GENE 19 23499 - 24518 1017 339 aa, chain - ## HITS:1 COG:BH1748 KEGG:ns NR:ns ## COG: BH1748 COG0502 # Protein_GI_number: 15614311 # Func_class: H Coenzyme transport and metabolism # Function: Biotin synthase and related enzymes # Organism: Bacillus halodurans # 17 335 3 321 333 442 64.0 1e-124 MHTEQQTAGGTGILPRWEHYADKALRGEKLEMEEALTVLRADDDELLPLMQAAFRVRKHY YGRKVKLNLIINAKSGLCPEDCGYCSQSIVSKAPITKYPLLEKDVLIEGARKALEMKVGT YCIVASGRGPTNRELDQVVEAVQTIKGEMPLKICACLGILSDEQAVRLKEAGVDRYNHNL NTSASHFAKITSTHTYDDRVRTVEQAKRAGMSPCSGIIAGMGESEEELAEMAFALRELDA DSIPVNFLNPIPGTPLAEQRSLNPRQCLKILALMRLICPSKEIRIAGGREVNLKSLQPLG LYAANSIFLGDYLTTEGQEAGEDHRMLEDLGFEIELCAL >gi|333602609|gb|AFDH01000140.1| GENE 20 24791 - 25549 817 252 aa, chain - ## HITS:1 COG:BH3346 KEGG:ns NR:ns ## COG: BH3346 COG1082 # Protein_GI_number: 15615908 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar phosphate isomerases/epimerases # Organism: Bacillus halodurans # 6 249 5 239 241 154 34.0 2e-37 MTKIGIGVQLYTLRSETEKDFRGSLRKVAELGYEGVEFAGYGGLSPRELSELLKELNLTS VGSHVGIHRLQENLDEEIEMNVAIGSKYVACPGWFPPERTEEGFREIVEILKESSRRFAE HGIAFGYHNHSFEFEEKIGDQTMFDAFFSALPQNELFVELDVCWAHNAGFDPIGVMKQYA GRTPLLHVKDLRKEDGKLLTVELGTGEVDLKPVLAAAEEIGTKWFIVEQDECQNPPFESI AASREWLRQNYR >gi|333602609|gb|AFDH01000140.1| GENE 21 25721 - 26614 780 297 aa, chain + ## HITS:1 COG:BH0711 KEGG:ns NR:ns ## COG: BH0711 COG2207 # Protein_GI_number: 15613274 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Bacillus halodurans # 15 281 1 252 263 221 42.0 2e-57 MTGIQDPASAVKDEVHILSAGYSVHRKPFVSNQRDGIEYYLLRLQTEGTCQVWQEGRYVT AEPGDLLLYRPGDAYELRIGSQHETLPPDADTVYSGDYYLMCSGSWMDAWWERFKRPGII RVGLDDSWLNIWREIFRERRRLHDNLQEIGDYLVRVLCLSLDRVIGDLADLGSFPQKPRF SYMVQRMKTYIEQNASEAFTLQDLADHVGLSTSRAGHLFRETFGQSVMDYAIEVRISMAC ERIRFGAMTLEQAAESCGFHSYSYFHRTFRARMGLSPREYRDGKLGSLEKPQEHGVT >gi|333602609|gb|AFDH01000140.1| GENE 22 26875 - 27498 731 207 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNRRKWMIGLILLCLAAGIYAVIRFNIDPTLAPEDIKLRARVVPAAEKPAEVPSQASAAA AYATVVEVELESTGGKALKQEGYSYKVYPYVQNGTVAAWEPAPDALGKGQKPESYAFGPD AVTMPRALEMIERLTGASTNEEEAKKAGMSGGFVYTGETFPAKVRYYAKEAGAGTDANDG RTYILFSYHEKKWGKDVSWVKAVKVAP >gi|333602609|gb|AFDH01000140.1| GENE 23 27662 - 28522 1068 286 aa, chain - ## HITS:1 COG:PM0315 KEGG:ns NR:ns ## COG: PM0315 COG0483 # Protein_GI_number: 15602180 # Func_class: G Carbohydrate transport and metabolism # Function: Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family # Organism: Pasteurella multocida # 19 279 7 258 267 193 41.0 4e-49 MTTVNQEPYRVGGKSFTAVAINTAAKAGEWIKSRVGEIRRVDVKYSPHDLVTEVDKGSEK MIRNLILTHFPHHAFLGEEGVEPGPEASAAALDNVSDAEYLWIVDPIDGTTNFIHGFPFF SVSIALAYKGEVIVGVVYDPMRDELFVAEKGKGAYLKAAKLGVSDESALSESLVGTGFPA DREGALPINLAGINALMPKVRNLRNAGSAALHLAYVAAGRLSGFYEIGLNAWDIAAGALL VQESGGRVTDTAGQPYTLGVRNVMATNGLIHDELQNELQQAGATGL >gi|333602609|gb|AFDH01000140.1| GENE 24 28666 - 29160 235 164 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_5345 NR:ns ## KEGG: GYMC10_5345 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: Protein export [PATH:gym03060] # 17 126 4 114 145 63 34.0 2e-09 MGGEVHSRLGSEGLGAEALVVRRALELKGRVEIPSRGTSMRPLIREGSVCTFVQASAADL RRGDIVLFQGEEGGLIAHRLIRRGGEGPQAPLLCKGDANIGFDPPVPAAKVLARLETISR EGRVSSRLSPGFRIWGRIMTAFPVLSRGFRLASRVAGRLRGQKN >gi|333602609|gb|AFDH01000140.1| GENE 25 29160 - 29987 774 275 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_5347 NR:ns ## KEGG: GYMC10_5347 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 8 269 8 263 263 201 40.0 3e-50 MTRFLTRIGNERIGIETDSPVLGEWLRESFDRGFGDDGEEPRLRLNIKGGYGVPFVDFDV AAEKRGGKVIYTRADYRIEADEDLKSASVAVQDEFALKHALMNVYSAFLIRNGLGLLMHS SCAVQDGRGYLFAGPSGAGKSTAALLSRPRVLLSDEATVIALPEAGPDGGAEALAYNSPF RSDSRWDIGDGVPAAPLEGMYVLRQSEEVRTEPMKAADALPIVMSQVFFWTTGAEETRTV MQLCMRFLERVPVHELFFQKNDLFWNVIAPRKAGV >gi|333602609|gb|AFDH01000140.1| GENE 26 30195 - 30971 1021 258 aa, chain - ## HITS:1 COG:BS_yjbW KEGG:ns NR:ns ## COG: BS_yjbW COG0623 # Protein_GI_number: 16078237 # Func_class: I Lipid transport and metabolism # Function: Enoyl-[acyl-carrier-protein] reductase (NADH) # Organism: Bacillus subtilis # 7 257 16 268 269 303 62.0 2e-82 MTTSGLLNGKNILVMGVANDRSIAWAIAQSLAAQGARLAFTYESERVEERVRKLAGNIPD SLILPCNVTVDEDLVRLADTLKGEFGVLHGVVHSIAFARTEELEGMFVDTSRDGYALAQD ISAFSLVAVSKHMYPLMTEGGSIMTMTYLGAERVMRNYNVMGVAKAALEASVRYLAADLG QHGIRVNGISAGPIRTLAAKGIKDFNSILHQVEEKAPLRKTTETAEVGDTAMFLMSHLSR GITGEIIHVDGGYNIVGA >gi|333602609|gb|AFDH01000140.1| GENE 27 31193 - 32194 843 333 aa, chain - ## HITS:1 COG:BH2597 KEGG:ns NR:ns ## COG: BH2597 COG4294 # Protein_GI_number: 15615160 # Func_class: L Replication, recombination and repair # Function: UV damage repair endonuclease # Organism: Bacillus halodurans # 1 331 1 321 322 273 44.0 5e-73 MIVRLGYVAMSTEVKNASPSKTMTATLFGQLNDREAAVRKLERIGAENLHNTLRLLRHNR AYDIKVYRYSSKLIPLLGHDMLEGWDPIPALAEEFKEVGDYAKLHGMRTSFHPDHFTVLS TPRKDVLLKSYADLERHAAMLEAMGLGEDAKLNIHVGGTYGDKPKAAKRFLAHFADLNES ARRRLTLENDDKTFTARETLEICEKVGVPMVLDVHHHQVNNEGEDILELWPRIQATWEGQ LCVSLPDSADQPLPPKIHVSSPKNDKDIRSHADYVEAGPLLEFFRGIAGITPRLDVMIEA KMKDAALFRLMKDLEPEKDVDILTEASVQINVP >gi|333602609|gb|AFDH01000140.1| GENE 28 32407 - 32730 289 107 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_0869 NR:ns ## KEGG: GYMC10_0869 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 105 1 105 105 157 78.0 9e-38 MGFQTEFNSVCKFKSEQELYELLEYGRCKMRKSGFRVYPTGQKVIAYSPANEAVAIVKIS ASIAEITFQGDEVTLVEMDLVRKLTEEEARVQTALAHEMFFGEQGSQ >gi|333602609|gb|AFDH01000140.1| GENE 29 32895 - 34061 1276 388 aa, chain - ## HITS:1 COG:BS_ddlA KEGG:ns NR:ns ## COG: BS_ddlA COG1181 # Protein_GI_number: 16077523 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanine-D-alanine ligase and related ATP-grasp enzymes # Organism: Bacillus subtilis # 19 386 1 353 354 401 55.0 1e-111 MIEIRRRGNMSRKLRIGLIYGGKSGEHEVSLQTAHAVIGALDASKYEITPFYITKQGEWR RGAALNGRVERKELLAFDASEGEAAGAALAPFFSGLTSQAGGVMAEVAAAGEAARTEAVD VVLPLLHGTFGEDGTIQGLLEMANIPYVGAGVLASAVGMDKVAMKKMFAQEGLPQCVYRH FTRSQWEKDQPFFLMETEISIGYPCFIKPANLGSSVGISKARNRQELIEAVEYAFQFDRK VIVEEFVDAREIEVAILGNEEPLASVPGEIVSSSEFYDYKAKYVDGKSTMVIPADLPEET AAQIQELAVQAFQSIDGSGLSRVDFFLTRTDGQIYINEINTMPGFTPFSMYPLLWKESGK PYAELLDDLIRLALERHAAKQQIKYTVE >gi|333602609|gb|AFDH01000140.1| GENE 30 34068 - 35090 920 340 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_0867 NR:ns ## KEGG: GYMC10_0867 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 3 336 11 338 340 255 45.0 2e-66 MSWKTALYDYLHARNTAETEASAGVLANVVEDERFSRETDARYHRLIESRKERGVKALRG EMRLKLQHVHEHEEGVTADVECQRQFFYEQGGRERKECIVIRERVGLIRKGSRWIIAQIS ARESEREKTRQSYSWLAEEGIYTPEGEISSSQPYLNYSILNHVGTYPESRKKLYDRDKAV KYADTWWNRYNPAFIEFEVDCTSYVSQCLFAGGTPMNYTGKRGAGWWYAGKQGSREFWSY SWAVAQALQLYVPASRRGLSGTLVSSAAELRPGDFISYDWDGDGRFQHNTFVTALDASGM PLVNAHTVSSKHRYWDYKDSYAWTDKTRYAFVRVSDEMDG >gi|333602609|gb|AFDH01000140.1| GENE 31 35358 - 38066 2771 902 aa, chain + ## HITS:1 COG:BS_citB KEGG:ns NR:ns ## COG: BS_citB COG1048 # Protein_GI_number: 16078863 # Func_class: C Energy production and conversion # Function: Aconitase A # Organism: Bacillus subtilis # 4 901 10 906 909 1139 62.0 0 MPQKDAFNVRKQLTVGGKSYHYYSLQDLQQQFAGISKLPFSIKVLLEAAIRQYDGRAITD EHVKQIATWGDENADHNKEIPFIPARIVLQDFTGVPVVVDLAAMRDTVARAGGDPKRINP LVPVDLVIDHSVMVDAFGNGMALETNMELEFERNEERYRFLRWAQTAFDNFRAVPPATGI VHQVNLEYLASVAATKTVDGETTVYPDSLVGTDSHTTMINGLGIVGWGVGGIEAEAGMLG QPLYFVTPEVIGFKLTGRLAEGATATDLALTVTQTLRKKGVVGKFVEFFGPGLDDLVLSD RATVANMAPEYGATVGFFPVDNSTLEYLRNTGRSEEQIALVEAYYKAQGMFRTKDSEEPI YSDVIEIDLSTVVPSLAGPKRPQDRVELTAMKESFNDILRTPVDKGGYGLSDEKIAEEVE VKYADGRTAKMSTGAVVIAAITSCTNTSNPNVMLGAGLLAKKAVERGLKTPAYVKTSLTP GSLVVTDYLEKANLLKPLEDLGFFVAGYGCATCIGNSGPLPDEVSQAVADNDMTVAAVLS GNRNFEGRVHAQVKANYLASPPLVVAYALAGNVNIDLTKDPIGYGTNNEPVYLKDIWPSN KEIEEAVATAVTAEAFREKYKDVFRANERWNQIAVPEGELYEWDKNSTYIQEPPFFQNLG QSLDDIKDVRGAKTLALLADSVTTDHISPAGNIKVDSPAGKYLIEHGVDKKDFNSYGSRR GNHEVMMRGTFANIRIRNQVAPGTEGGVTTYLPTGEVMSIYDASMNYQDKNTSLVVIAGK EYGTGSSRDWAAKGTLLLGVKAVIAESFERIHRSNLVGMGVLPLQFLEGQGWKTLGLTGR ETIEISGLSNDVQPGEQVTVTATREDGTSFEFKAIVRLDSMVDVDYYRNGGILQTVLRQM MY >gi|333602609|gb|AFDH01000140.1| GENE 32 38722 - 39678 1051 318 aa, chain - ## HITS:1 COG:BS_ydfM KEGG:ns NR:ns ## COG: BS_ydfM COG0053 # Protein_GI_number: 16077614 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted Co/Zn/Cd cation transporters # Organism: Bacillus subtilis # 2 294 6 297 297 230 41.0 2e-60 MEQRKSMIAIWISLISNVVLTGIKLVVGWLFGSQVLIADGIHNAGDVIATATAYSSMRIS NRPADHDHPYGHGKAEVLGSGAVALLLGAAAIYMGYHAVMALLEPPGEAHVLALVAAVIS LVWKQWLYVYTMRLGRAANSKGLIATAYDHLADVYASIAASAGIALALAGDYFDIPFLAY GDPAAGIIVSFLVIKLAYTMGTEAVNILMETNVEDAKLQQYKEIIESFPDVKRIDRLRAR EHGHYILVDARIGIMGTLTIQQGHDIGRSIKEAIRAKHPEVDEVLVHLNPWYPDEEHNPD AGRIPHSKAAANPVNGKK >gi|333602609|gb|AFDH01000140.1| GENE 33 40108 - 40848 698 246 aa, chain - ## HITS:1 COG:BH2137 KEGG:ns NR:ns ## COG: BH2137 COG1414 # Protein_GI_number: 15614700 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus halodurans # 8 245 2 246 251 126 31.0 4e-29 MEEAKSTVRAVERALDVLLCYTDATELTLTEISSKVSLHKSTVYRLLASLEAKGFLVRES DGDKYRLGFSIWELAAHMSQSDDPGMILLPEMERLRDQVNETISLYVRDGRERVRVQAVQ SNHAIRRVAPIGARMPLFVGASSKILLAFGEAEVQEQAMLEAELAGILREPFLQQLHETR KAGYATSVEEREPGAAALAAPVFNRAGKLVAALAVSGPSNRLTLEAMLEQAPVVMEAARR MGTMLR >gi|333602609|gb|AFDH01000140.1| GENE 34 41146 - 42159 932 337 aa, chain + ## HITS:1 COG:BH1308 KEGG:ns NR:ns ## COG: BH1308 COG1073 # Protein_GI_number: 15613871 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Bacillus halodurans # 14 322 6 316 321 130 29.0 3e-30 MSMHPVNSTPLQPAPLDHIPVKSFSRRKKAVLLSLLCFFVLCSSLILGFHGFIAWTLARP TIAPLSSNPAKAVGLPYQNVTFPSSNGSSTLSGWYIPTAQASSQTVIFSHGYGGNREELW VPIYSLAKKLHDSGYNVLMFDYGYVHPENDRIVTAGIQESKELLGAVNYIKEKGSERVYV WGFSMGAGTALQAALQTKDIDGMILDSTFLLNPDTLYHNMKQYVNIPKFPSLPLVRVFFP LLNGVNMNQIPYQAVTTHEYPMPIYFIHGDEDERAPHEIAEQVYKNQHNVFSNYWVLPTG KHELIYSAKPDEYITRTFGFLKTISRPQLSESGFVEM >gi|333602609|gb|AFDH01000140.1| GENE 35 42228 - 44042 351 604 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15900660|ref|NP_345264.1| superoxide dismutase, manganese-dependent [Streptococcus pneumoniae TIGR4] # 405 593 5 197 201 139 40 3e-32 MLSVYGSLMPLRILEEIRFWKTQEKEHTVVIRELVPALEPAYVQALKEWEEVFAKTEAAA VQWVEWAIRTQNPTDPFLQQQLRQLIDVSTKQSVQFIEFLQIVEKESKPVSSNPVVKTVI EHIIRESEYFLGTLKGLETAQKGSPYGTGSWGFGVPGQWPPGAHSSLGGYAGQAGDGPGA FGAPGSPGGAPGAWGAPGAWGAPGAWGAPGYYGPGGVILPGAGFGRSENNPDGHDLPGTS IGGAGSSLEGVSTPGPGGGGAGPGTGPGQYGIYSVPVPGHDSDGPDPVGYPGYTPPGYSS GSPGFPVPQGVGPTPGTGVPPGFGVGVPGPPASYTPGPSAYPGAGIGPVGPEGPWDTRTE GDRPPLSDMAAQSGAAPPPAHASGQGQTVPALSPYKPVPIGGHKLPPLPYAYNALEPHID EATMREHHDKHHKAYVDDLNKAEQMLAKARDSGDFDLVKHWERELAFNGAGHYLHTIFWN IMKPNGGGKAYGPIAAEINKSFGSFDRFKKQFTEAAKKVEGGGWAILVWSPRSHRLEILQ AEKHQNLSQWDVIPLLVLDVWEHAYYLKHKSNRAKYIEDWWKVVNWDHVNERFEPVSKLT WLPY >gi|333602609|gb|AFDH01000140.1| GENE 36 44312 - 45097 797 261 aa, chain - ## HITS:1 COG:BS_glcR KEGG:ns NR:ns ## COG: BS_glcR COG1349 # Protein_GI_number: 16080683 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Bacillus subtilis # 6 239 4 230 258 132 35.0 6e-31 MSLVGEERKEHILHLLNLHNKVRTHELVEHFEVSSETIRRYLEELEQENKLKRVYGGAVK FDLMREEPSPFNREVTKAEEKKRIGRAAAAMVRDNDVIVIDDGTTTLQMINYLANTRNLT VLTPSVPALSLLIEYKNKEMFSGDIYFIGGKINAKHYRASGSVAESMMESFYVDKAFVAV DGLHPQSGLTSYDAERGLLVRKFMEHAAQTVALMDHTKNGKTHFYKISDLKEIHAVICDT EHPPEWNGDFEAIDTKWIVAE >gi|333602609|gb|AFDH01000140.1| GENE 37 45324 - 46508 1222 394 aa, chain - ## HITS:1 COG:SP0919 KEGG:ns NR:ns ## COG: SP0919 COG1748 # Protein_GI_number: 15900799 # Func_class: E Amino acid transport and metabolism # Function: Saccharopine dehydrogenase and related proteins # Organism: Streptococcus pneumoniae TIGR4 # 90 377 122 407 419 63 23.0 9e-10 MKVFCLGGAGRICREAILDLVQYSVFEQITVADFNEEEGRKVVRELNDPRVEFIKVNVYD KETTVAQMRGYDIVMDGTAITLNGLSTACIAEAGCHGINLNGFGDEDASAALFERYGKTC VPGFGMTPGVTQMMAMHAASQLDTVDTVRVSHGSYRPIAFSRSITETTTYEYDPNLPGRV VYENGQFIQVPPFARPREIRLPEPYGTSVQYIIPHAETKTLAKALAKKEVRLIEVRGTWP QPNMRLVKALYEYGFMRNDKIRVNGAEIGIMDCISEYLYHSREGAETELYGYALHIEVTG VKNGVPMRLTLTHTHPASDGSVPGWEGLRAYTRNVGIPMAIAAVMIAEGRVNGAGILTPE EAFEPQAVFAELEKRGIRIHQATEVLMEREPVQA >gi|333602609|gb|AFDH01000140.1| GENE 38 46574 - 47731 1091 385 aa, chain - ## HITS:1 COG:VCA0604 KEGG:ns NR:ns ## COG: VCA0604 COG0075 # Protein_GI_number: 15601362 # Func_class: E Amino acid transport and metabolism # Function: Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase # Organism: Vibrio cholerae # 14 369 3 358 367 448 59.0 1e-126 MVQTDTMYSAMPDNEYLLLTPGPLTTTKRVKAAMLRDWCTWDRDYNGLVQDIRARLVALG AGRAEGYTCVPMQGSGTFCVESVIGSVIPPGGKLAVLTNGAYGDRIAQMARVLGIETAVL DSGELSPVSPGELEELLRRDETITHVAVVHSETTTGMLNPIAEVGAAAKKYGKTFIVDAM SSFGGIEMDMSELNIDFLISSANKCIQGVPGFGFVLARTEELKRCEGQARSLSLDLYDQW NTMERQSGKWRFTSPTHVVRAFHEALKELEDEGGIKARCERYTENQRTLAEGMEAIGFRP LLDPSVQSPFITSFYYPDSSDFTFLAFYEELKKNGFVIYPGKISAAQTFRIGSIGDIHPA DMQRLVRTIADVTGGAAVTKDAARN >gi|333602609|gb|AFDH01000140.1| GENE 39 47745 - 48587 752 280 aa, chain - ## HITS:1 COG:VCA0606 KEGG:ns NR:ns ## COG: VCA0606 COG0637 # Protein_GI_number: 15601364 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Vibrio cholerae # 2 261 6 267 271 225 43.0 8e-59 MIKAVIMDWAGTTVDYGCFAPLNVFIEIFRRKGIEITQEEARGPMGLLKWDHIREITKMP RVADLWEQKFGSRPDDRDVDTLYADFEPLLFASLRNHCEPIPGAVELMGRLRERGIKIGS TTGYTEEMMDIVVEEAGRRGYRPDVLVTPTEMPAGRPYPWMIYENCIRLGVYPLHHVVKV GDTLSDIREGLNAGVWTVGIVLGSSELGMSEAEVSACPPEELKRRCEEVRERFYEAGAHY VIESVGKLDAVLELIEARLKADAVAPAGTAVSAPEGVRHA >gi|333602609|gb|AFDH01000140.1| GENE 40 48708 - 50468 1940 586 aa, chain - ## HITS:1 COG:SMb21542 KEGG:ns NR:ns ## COG: SMb21542 COG1178 # Protein_GI_number: 16264731 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+ transport system, permease component # Organism: Sinorhizobium meliloti # 72 585 163 669 680 481 48.0 1e-135 MMIVRRVQSAARDVRSSLKRTGGRVRRRHGKEERMQQALIALMIAVLAVTVLLPLIGLFS KAFYDKTGQFAGLENFVVYFTTPALLRSLLHTLNVSLLTTVISVSLAFLYAYALTRTDIK GRTLFRYIALLPLFAPTMMHGIGLIYLFGNQGLVTTGLFGLLPAGLDIGLYGPVGIVLAE VAYTFPQAMMIILVSLAVTDNRLYEAAETLGAGKWRTFLSVTLPSVKYGVISALFVCFTM SFTDFGAPKIVGGNYNVLATDIYKQVIGQQNMTMGAAVGILLTLPAILAFAVDRFVERRQ KALVSSKSVPYRIQKGSWRNAVFYVICSLIGGAILLLLGAVIFASVIKVWPYDLSFTWNH FDFTSVAGEGLAPFWNSMQAALYTALIGTAVTFIFAYLIEKVRHWHALRQFAYFLSILPL ALPGMVIGLAFIFFFNRPDNPLNGIYGTIWIVVLANIVHFYAVPFITATASLKKLDKEFE TVSASMRVPFYRTFARVTVPMSLPAVLEMFVYYFVNSMVTVSAVVFLYSADFKLASVAIV NMDDAGDTAPAAAMSVLILLTNIVVRIGYEQLTKVMRNRASAWQRK >gi|333602609|gb|AFDH01000140.1| GENE 41 50487 - 51530 921 347 aa, chain - ## HITS:1 COG:VCA0602 KEGG:ns NR:ns ## COG: VCA0602 COG3842 # Protein_GI_number: 15601360 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport systems, ATPase components # Organism: Vibrio cholerae # 1 340 30 384 403 313 51.0 5e-85 MNQAHLSIRGIRKTFGSFTALDSISLDVRKNEFVCLLGPSGCGKTTLLRIIAGLEHPDTG AISAGGKDITALPPAQRNFGMVFQSYALFPNMTAAQNIAFGLKSRRLGKRDIAEKVRESL DLVDLWEMRDKYPSQLSGGQQQRIALARAVALSPDFLLLDEPLSALDAKVRHKLRGEIRA LQEKIGVTTIMVTHDQEEALTMADRIVVMNNAEVAQIGTPREVYERPASPFVADFIGAIN FLDGAELQERGLRGAGMMAVRPEHIGAEEPGSRGGIPAVVRGIEFRGPFYHVMLDVLDSS GEPLGRPMTIHVSAQHYQQLGLEKNKKLSLRLPEERLIAFEPQAAAK >gi|333602609|gb|AFDH01000140.1| GENE 42 51602 - 52708 1238 368 aa, chain - ## HITS:1 COG:SMb21540 KEGG:ns NR:ns ## COG: SMb21540 COG1840 # Protein_GI_number: 16264729 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+ transport system, periplasmic component # Organism: Sinorhizobium meliloti # 44 368 17 340 340 328 53.0 8e-90 MKKTASFCLTLLMAISLLAGCGKSGSEAGAATKPPEKAGGNEGSSQSGALKGDLTVYTAL EDDQIKAYLESFKKTNPDVKVNIVRDSTGIITAKLLAEKDNPQADVVWGVAATSLLVLDQ NGMVEGYSPKGIERVSPMFKSTGTTAKWVGIDAWETAFIVNTKELEKKKLPVPKTYQDLI KPEYKGMIVMPNPASSGTGFFDVTGWQQLYGKGPSWEFMDKLHNNIAVYTHSGSKPAKMA AAGEYPIGISFGYRGIQEKKKGAPVEVVFPQEGSGWDVEANALMKKAAIKPEAKAFLDWA ISDEAMKAYNKNYAIISVNDGSGTIPEGYSKDPLSQLIKYDLNDAAKNRDGILKEWEKRY NAKSEPKS >gi|333602609|gb|AFDH01000140.1| GENE 43 53043 - 53630 714 195 aa, chain - ## HITS:1 COG:BH1646 KEGG:ns NR:ns ## COG: BH1646 COG0302 # Protein_GI_number: 15614209 # Func_class: H Coenzyme transport and metabolism # Function: GTP cyclohydrolase I # Organism: Bacillus halodurans # 14 195 5 187 188 226 61.0 3e-59 MPAKEYKNTKVADNREQIEGHIREILRLIGENPEREGLLDTPARVTRMYEEIFAGYEADF RDVLGVTFDEQHEELVIIKDIVYYSQCEHHMAPFFGKIHVGYIPSGKIAGLSKFARLVEA ITRKLQVQERITSQIANTLDEVLEPHGIMVVVEGEHLCMCSRGVKKPGSKTVTSAVRGSF RTDSALRAEFLSLIK >gi|333602609|gb|AFDH01000140.1| GENE 44 53620 - 54228 484 202 aa, chain - ## HITS:1 COG:RSc1201 KEGG:ns NR:ns ## COG: RSc1201 COG1309 # Protein_GI_number: 17545920 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Ralstonia solanacearum # 5 177 20 190 209 82 34.0 5e-16 MPSNKDKIIAAAMELFHEQGFQATGLEEILSRCGVVKSNFYYHFKSKEELGRQVIQQKIA LMEEQIFGPSLDNRALGPKERLGRLFRLMQVSAEEHDCRRGCYIGNLVLELGDRYEELRR LLVDFLEDIENRIEACLQEGAANQEINLHGMKARETAVALTALLQGGMLLGKAHRSSFAL QYGGKLVKHIIGNGSEGEQHAG >gi|333602609|gb|AFDH01000140.1| GENE 45 54322 - 54564 314 80 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_0807 NR:ns ## KEGG: Pjdr2_0807 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 1 71 1 71 71 89 77.0 5e-17 MWQIIIPILTLIAGLVGGFFIGVFYLRKQLESMQNNPEMIQKMAKQMGYNMNKQQMNKVQ TMMKNQNLTSKKPNKNARSK >gi|333602609|gb|AFDH01000140.1| GENE 46 54643 - 55296 747 217 aa, chain - ## HITS:1 COG:CAC0277 KEGG:ns NR:ns ## COG: CAC0277 COG2206 # Protein_GI_number: 15893569 # Func_class: T Signal transduction mechanisms # Function: HD-GYP domain # Organism: Clostridium acetobutylicum # 2 189 141 337 372 129 37.0 4e-30 MYLHALNVCMISTLIGINMNLNPQQLKELAIGALLHDVGKLDRITDDEAKDDRLHHTWRG FELLKAKREYSLLIAHVAFQHHETPDGLGKPRRLLGEQIHLYAKIVSAANTYDNLLQGSG LDAGLLPHVAIEHMMAMAGTKLDRDILIHFLRTVSVYPTGISVRLSTRETGVVVGQHRGL PGRPVVRIIKQGGGKEYDVKEMDLAKHTTLFIEHVLA >gi|333602609|gb|AFDH01000140.1| GENE 47 55332 - 55673 414 113 aa, chain - ## HITS:1 COG:no KEGG:BBR47_21830 NR:ns ## KEGG: BBR47_21830 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 1 111 1 111 353 102 45.0 4e-21 MKYVPIDSIEPGQYLGKTIFTASGAVMLAEGVQLTVYMINTLRRIGVSMLYIQDQETDDI EIPEVVSEETKRIVIRQMLDTFDSIRSGKDFNTRHMSKNVDTLLDEILKTRTF >gi|333602609|gb|AFDH01000140.1| GENE 48 55670 - 56266 541 198 aa, chain - ## HITS:1 COG:BH1021 KEGG:ns NR:ns ## COG: BH1021 COG0350 # Protein_GI_number: 15613584 # Func_class: L Replication, recombination and repair # Function: Methylated DNA-protein cysteine methyltransferase # Organism: Bacillus halodurans # 21 181 9 169 175 164 50.0 1e-40 MDDSGRGTVTTAGESVYIETDTLDSLIGPLLLARTKTGLCAIEFGSGPEAVRKLEQWTDR WIPGGTLVPSPGGFREIREQLAEYFSGQRRSFDLAFDLRGTEFQLRVWKALLSVPYGATA SYKDIAAAIGSPQAVRAVGGANNRNPVPIVIPCHRIIGAGGQLVGYGGGLPVKTALLELE GWSPADVRHTSKNREWKA >gi|333602609|gb|AFDH01000140.1| GENE 49 56340 - 57587 1052 415 aa, chain - ## HITS:1 COG:BH1020 KEGG:ns NR:ns ## COG: BH1020 COG1600 # Protein_GI_number: 15613583 # Func_class: C Energy production and conversion # Function: Uncharacterized Fe-S protein # Organism: Bacillus halodurans # 16 381 6 371 391 482 61.0 1e-136 MRITLADASERELLLLKQEIIQAAPSLGIDKIGFASAEPFHDLKDILLRHREKGYESGFE EPDIDKRVNPDRSFEGVKSIIAIAVAYPSKLVNPPRSEAGAYRGMLARAAWGDDYHLVLR DRLKRLGAFLEERVDDVRFMDMVDTGALVDRAVAERAGIGWVGKNCAVITPEWGSWVYLG ELLTNLPFPADTPIMDQCGECRICIDACPTGALVGPGQLNSSRCISFITQTKGTIPDEFK EKIGNRLYGCDTCQIVCPVNKGKNWTHHEDLQPDHEVVKPLLIPLLTMGNREFKERFGRS SAAWRGRKPIQRNAVLALGNFKDRSAVPVLASLLKDDPRPELRATAAWSLGKIGGEAALE AVLRAQRSERDEGVLAELDKAARKLGGLSPSGGDPAAPEAGGPQADGAGTAPAAE >gi|333602609|gb|AFDH01000140.1| GENE 50 57740 - 58123 250 127 aa, chain - ## HITS:1 COG:DR1321 KEGG:ns NR:ns ## COG: DR1321 COG0681 # Protein_GI_number: 15806339 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal peptidase I # Organism: Deinococcus radiodurans # 11 121 76 193 203 83 38.0 1e-16 MNKTAAWTGSFSRGDVVVLKEPDGTDMEKTHPYLVKRIVAAAGDRLEITDGRVFVNGEEL KEPYTDERIGDGDYGPLTVGKGYCFVMGDNRRSGASLDSRSFGPAAVSLLIGRAEWIVWP SDALKGL >gi|333602609|gb|AFDH01000140.1| GENE 51 58350 - 58901 615 183 aa, chain - ## HITS:1 COG:L196206 KEGG:ns NR:ns ## COG: L196206 COG3557 # Protein_GI_number: 15672951 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Uncharacterized domain/protein associated with RNAses G and E # Organism: Lactococcus lactis # 5 177 8 176 176 118 36.0 8e-27 MESFEHFVIKSFKHDGHLHRMWLENWKVPQHELHPEHQRENMNVFINNQTKIQEADGKEW TSRIPGVSFFIPGEWYNIVALLEEGGVRYYCNVASPFYRAGNVITYIDYDLDVIRMAGGD VHVVDREEYEQHKALYRYPPLVESKVKAGLDALLKRIGKQGAPFGDESVRRYYQLWKDRE TEA >gi|333602609|gb|AFDH01000140.1| GENE 52 59182 - 59613 298 143 aa, chain - ## HITS:1 COG:ECs3305 KEGG:ns NR:ns ## COG: ECs3305 COG0456 # Protein_GI_number: 15832559 # Func_class: R General function prediction only # Function: Acetyltransferases # Organism: Escherichia coli O157:H7 # 1 135 38 172 178 76 31.0 1e-14 MRVRSFRLSDYSSISGLLQEALSDPCYKETMQAFAKQLSWDGELVLVAEEQDELVGMVIG TIDDNKGYYYRLAVAPGHRRKGIGKALIEGMKQRFMQRKVKRILVTVDHHNELVLPVYES AGYNHSDFTRTANRLSIVKKASM >gi|333602609|gb|AFDH01000140.1| GENE 53 59996 - 61318 1423 440 aa, chain - ## HITS:1 COG:BS_licH KEGG:ns NR:ns ## COG: BS_licH COG1486 # Protein_GI_number: 16080907 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases # Organism: Bacillus subtilis # 1 436 1 441 442 525 56.0 1e-148 MDKSLKIVVIGGGSSYTPEIVEGFILNYDKLPIREIWLVDIPQGEWKLNIVGSLAKRMVE KSGLPIQVHLTLDRREALPGADFVSTQMRVGMLEARAWDESIPLKYGVIGQETTGPGGMM KAFRTIPVLLDICRDMEELCPDAWLLNFTNPAGMVTEAISKHSSIKSIGLCNAPIGMHKW LMKEYDVPASSIYTEFVGLNHLHWITQITVDGESKLEELVGSGSGYSAKNVPQMEWNASF IRGLGAVPSYYLKYFYLKDEMLEEQIEASKKDGTRAEVVKRVEDELFELYKDPDLAEKPK QLEKRGGAYYSEAAVNLMCSLYNDSRDIQTLNVRNDGILDFLPKESSIEVNCVVTRQGPI PLSVTRVPEAVKGLIHAVKTYEILAIEAAVTGDRSIALQALAHHPLISSVNTAEKMLDEM LEQNRAYLPNFFPAAEHSNV >gi|333602609|gb|AFDH01000140.1| GENE 54 61341 - 62303 1185 320 aa, chain - ## HITS:1 COG:TM1280 KEGG:ns NR:ns ## COG: TM1280 COG2971 # Protein_GI_number: 15644036 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted N-acetylglucosamine kinase # Organism: Thermotoga maritima # 4 315 6 312 322 120 29.0 5e-27 MNYYLGMDAGGSKTYAVIADETGRVVGTGRSGMGNHQIHHDRAAASIGGAVDEALREAGL TKADIAFAYFGLAGADREIDFRILRKLLEPIGFANWDLACDTIVAMRAGTTKPYGVVAIC GSGVNCSGMNRQGEAYQCGGFTYTFGDFGGGGGLAVEAFRSVVRAWDGRGEQTLLTGLVL ELLGYETVGDMFHEFLDHNKSVPLELAKLLFTAAGQGDQVARDILKEQGEEIGLSVKAIV NKLGMAEEEFDVVLAGSVLMRGNGDYVEKYIVDAAKKAAPASTIRRLDAEPVVGSVLLAM ERGGLTVSEEVSEKLKQLKM >gi|333602609|gb|AFDH01000140.1| GENE 55 62357 - 63385 851 342 aa, chain - ## HITS:1 COG:BH2219 KEGG:ns NR:ns ## COG: BH2219 COG1609 # Protein_GI_number: 15614782 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus halodurans # 1 330 1 328 335 190 35.0 4e-48 MKISIFDVAKRAGVSVVTVSRVLNDSPTVRENNRQKVRQAIKELDYRPNSAARSLARGKT GVIGLTLTTLQDSLFDGIVKCVNDALKEHGYFLALSIGPDTSDSDWGEGSNFLYQEDRVD GIIVLSPLKEENDVLELKRKKIPFVLVDNQQEDMSASVVNVDNYMGGLEATRHLLSLGHT KIAHIAGPELYRSARERKRGYIDAMAEAGHPPFLLVDSDFDIRSGFDIAKSWLAEGERPT AVFAADDFIALGVIEAFRDAGLHVPRDLSVIGYDDQAFSSAIHPRLTTVCQPSEGMAQEA VKLLLKIVNGTQKRNASVKLEPKLIVRESTASPDGRTLEIDR >gi|333602609|gb|AFDH01000140.1| GENE 56 63449 - 64828 1642 459 aa, chain - ## HITS:1 COG:BH1864 KEGG:ns NR:ns ## COG: BH1864 COG1653 # Protein_GI_number: 15614427 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Bacillus halodurans # 3 453 1 437 461 120 26.0 6e-27 MWMTRKPYHMTLAAVLAASVTLAGCSGGDKKTEGTGGSGKSGETVTITHYTQDAPDKAYV EQLIPEFEKKFPNIKVKVVKAPYEQFESKLQSMVAAGNSPDVTSHWGDAGFAEYYNKGLV RDITDLLKEDSFKPSDYGISDHLMDIYKVNGKTYGIPVYSYVSVLVYNKDMFDKAGIPYP PSDYEDKSWTFEKMQEYAKKLTKISKNLNDTQYGIDWGWSERDMRPLYFGASTYPEETFT KNGGNPEVSKFNSPEVKDAYRTLFDMMHKDKSMIDPVTTKAVAGEGGDPFAAGKVAMSVG GAWLLAGSNDFGFKVGVAAVPAGKNEKARDVLFVDPLFILKDSKHPKEALEWIKFQLSKE TQEKAVELSGGTPPANSQAGEKYFSYFQNIDPKDLKNVYEGGLKYGVESWNHMIPGYAEL NTIIKNEMEPIENGKKSVDEVMPDLEKHINDVLAKRQKK >gi|333602609|gb|AFDH01000140.1| GENE 57 64860 - 65744 956 294 aa, chain - ## HITS:1 COG:BH1119 KEGG:ns NR:ns ## COG: BH1119 COG0395 # Protein_GI_number: 15613682 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Bacillus halodurans # 22 294 4 281 281 195 41.0 1e-49 MSSAVPTQPARAYKPSRLKAGRRTWFDWFVFAMLIVLSVLMILPSVHMLSTAFKTRAESL RFPPTILPDKFVTENFKKLFELDFLNWYQNSLLIGIMTVIGTVLSSALVAYGFSRYRAKG KDALFAFLLATMMLPYPAVMIPQFILFKELGWIDTFLPLIVPAFLGSAYFIFLLRQFYTS LSNELFEAAKVDGCSELRQWWSIALPLSGPALATVAIFSFIWSWNDLLGQVLYLNSTEKF TLPIGMAGMVSSTTRPPSWNVVMAASLLALVPILVLFSVAQRYFVQSIVLTGVK >gi|333602609|gb|AFDH01000140.1| GENE 58 65741 - 66634 891 297 aa, chain - ## HITS:1 COG:lin0760 KEGG:ns NR:ns ## COG: lin0760 COG1175 # Protein_GI_number: 16799834 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Listeria innocua # 1 286 4 291 296 228 44.0 1e-59 MRTKTARHQTLWFYIFISPWLIGAVLFALYPIVSSAYYSFTEYDIVNPPKWVGFQNYVDL FHDDIFWISIWATVRYTLLSVPIQLGLSLLFALLLNQKIPFKGFFRTVMYFPSMISGVAM ALIWMWIFNPQSGLLNQGLSLLGLPGPLWLFDEKWAIFALVLMSLWTVGGGMVIFLAGLQ SVPPSLYEAAELDGVTRLRSFWHITLPMISPVFLFQLIMGLIESFQVFTQAFIMTKGGPN YSTMFYVYYLYQNAFKNFKMGYASAMAWLLLIVVMVLALLIMKGSKRFVHYEGGDGV >gi|333602609|gb|AFDH01000140.1| GENE 59 67052 - 67240 320 62 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MPQQEKRHLHELSSLDASAWDEEELSYHHSVMSELSPWLNAQGTAIHAQVIREIERRREN TV >gi|333602609|gb|AFDH01000140.1| GENE 60 67335 - 67949 637 204 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15900660|ref|NP_345264.1| superoxide dismutase, manganese-dependent [Streptococcus pneumoniae TIGR4] # 1 203 1 201 201 249 58 2e-65 MAHQLPALPYPNNALEPHIDATTMEIHHDRHHNTYVTNLNAALEGHADLQNKSLEDLISD LNSIPEAIRTAVRNNGGGHANHSLFWETIAPNAGGQPTGALAQAIDSELGGFDKFKEDFA KAATTRFGSGWAWLALGKDGQLKVYSLPNQDSPLFEGDTPLLGLDVWEHAYYLKYQNKRP DYISAFWNVVNWDAVNKRYEAAKK >gi|333602609|gb|AFDH01000140.1| GENE 61 68316 - 68846 480 176 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_0847 NR:ns ## KEGG: GYMC10_0847 # Name: not_defined # Def: A/G-specific adenine glycosylase # Organism: Geobacillus_Y412MC10 # Pathway: Base excision repair [PATH:gym03410] # 12 166 228 379 382 72 36.0 7e-12 ASGGARGSLAAAEPPGPEGGPGLLLAAADEAAASSAGADRSAEAQPAVGSAAAGPEAPAK RGRRGKAAAAGSEAPAAWPGDAHSMEQLRIALAEEEHVDVLPQGWIADTNHTFSHLYWDM KVYRCRLGGQGGAPAGQLPYRYRWMSPEELERYAFPNVFLRVLKMYAEEQGVWEGK Prediction of potential genes in microbial genomes Time: Sun Jul 17 11:01:55 2011 Seq name: gi|333602588|gb|AFDH01000141.1| Paenibacillus sp. HGF7 contig00265, whole genome shotgun sequence Length of sequence - 588 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 506 298 ## COG1020 Non-ribosomal peptide synthetase modules and related proteins Predicted protein(s) >gi|333602588|gb|AFDH01000141.1| GENE 1 2 - 506 298 168 aa, chain - ## HITS:1 COG:BS_ppsC_2 KEGG:ns NR:ns ## COG: BS_ppsC_2 COG1020 # Protein_GI_number: 16078893 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Non-ribosomal peptide synthetase modules and related proteins # Organism: Bacillus subtilis # 1 167 846 1012 1505 179 48.0 2e-45 MDDQVKIRGFRIELGEVENALRQLEGIQDAAIIVRDTHDGEKALFAYLISKDIVQLQAVR RDLEEVLPAYMVPAYMMQIEQLPVTRNGKLDKRALPEITAVSEKEYTAPKNELEAQLCTI FSEVLGVERVGTQDSFFELGGDSIKAIRIVSKLRSAGYHIAIKDIMQK Prediction of potential genes in microbial genomes Time: Sun Jul 17 11:02:05 2011 Seq name: gi|333602556|gb|AFDH01000142.1| Paenibacillus sp. HGF7 contig00064, whole genome shotgun sequence Length of sequence - 29020 bp Number of predicted genes - 30, with homology - 28 Number of transcription units - 16, operones - 8 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 40/0.000 + CDS 62 - 820 626 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 2 1 Op 2 . + CDS 817 - 2565 1536 ## COG0642 Signal transduction histidine kinase - Term 2821 - 2852 0.5 3 2 Tu 1 . - CDS 2886 - 4193 1609 ## COG2233 Xanthine/uracil permeases - Prom 4257 - 4316 7.9 + Prom 4352 - 4411 5.7 4 3 Tu 1 . + CDS 4458 - 5441 967 ## COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III 5 4 Op 1 . - CDS 5644 - 6096 387 ## 6 4 Op 2 . - CDS 6093 - 6422 318 ## PPSC2_c4311 protein 7 5 Tu 1 . - CDS 6552 - 6842 388 ## gi|253575621|ref|ZP_04852957.1| conserved hypothetical protein - Prom 6879 - 6938 2.1 - Term 6891 - 6926 -0.5 8 6 Op 1 . - CDS 6979 - 8241 964 ## GYMC10_1457 glycosyl transferase family 2 9 6 Op 2 . - CDS 8222 - 8866 593 ## GYMC10_1456 glycosyl transferase family 2 10 7 Op 1 . - CDS 9289 - 9897 547 ## PPE_03817 hypothetical protein 11 7 Op 2 . - CDS 9926 - 10555 508 ## PPE_03817 hypothetical protein + Prom 10539 - 10598 4.0 12 8 Op 1 . + CDS 10730 - 11125 497 ## PPE_03819 hypothetical protein + Prom 11146 - 11205 2.2 13 8 Op 2 . + CDS 11234 - 11698 544 ## Pjdr2_4163 hypothetical protein + Term 11718 - 11756 9.4 - Term 11770 - 11800 1.1 14 9 Tu 1 . - CDS 11911 - 13134 1244 ## COG0438 Glycosyltransferase - Prom 13229 - 13288 3.3 + Prom 13229 - 13288 2.9 15 10 Tu 1 . + CDS 13399 - 14310 648 ## COG0451 Nucleoside-diphosphate-sugar epimerases + Term 14500 - 14550 14.3 - Term 14487 - 14536 14.1 16 11 Op 1 . - CDS 14556 - 15596 921 ## Dhaf_0891 glycosyl transferase group 1 17 11 Op 2 . - CDS 15652 - 15834 248 ## 18 11 Op 3 . - CDS 15866 - 17092 1142 ## COG0438 Glycosyltransferase - Prom 17252 - 17311 2.2 + Prom 17204 - 17263 2.8 19 12 Tu 1 . + CDS 17292 - 17645 402 ## gi|315646703|ref|ZP_07899819.1| hypothetical protein PVOR_15024 + Term 17679 - 17713 2.1 - Term 17667 - 17700 1.1 20 13 Tu 1 . - CDS 17780 - 18151 417 ## PPE_03823 hypothetical protein - Term 18200 - 18236 4.5 21 14 Op 1 . - CDS 18301 - 19521 961 ## PPE_03821 hypothetical protein 22 14 Op 2 . - CDS 19547 - 20845 1041 ## PPE_03822 hypothetical protein 23 15 Tu 1 . + CDS 20980 - 22176 873 ## COG0463 Glycosyltransferases involved in cell wall biogenesis + Term 22230 - 22264 8.3 - Term 22218 - 22252 8.3 24 16 Op 1 26/0.000 - CDS 22256 - 23338 840 ## COG0438 Glycosyltransferase 25 16 Op 2 11/0.000 - CDS 23383 - 24126 612 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 26 16 Op 3 12/0.000 - CDS 24158 - 25003 676 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 27 16 Op 4 1/0.750 - CDS 25041 - 26048 820 ## COG0451 Nucleoside-diphosphate-sugar epimerases 28 16 Op 5 2/0.500 - CDS 26033 - 26875 899 ## COG1091 dTDP-4-dehydrorhamnose reductase 29 16 Op 6 3/0.500 - CDS 26872 - 27858 1081 ## COG1086 Predicted nucleoside-diphosphate sugar epimerases 30 16 Op 7 . - CDS 27848 - 28942 1160 ## COG0381 UDP-N-acetylglucosamine 2-epimerase Predicted protein(s) >gi|333602556|gb|AFDH01000142.1| GENE 1 62 - 820 626 252 aa, chain + ## HITS:1 COG:BH3426 KEGG:ns NR:ns ## COG: BH3426 COG0745 # Protein_GI_number: 15615988 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Bacillus halodurans # 1 242 1 237 241 270 60.0 1e-72 MKEARLLIVDDEPALLHMLEKVLAKEGFTRINTVSTAEEALEACKRQTYDLIVLDVMLPG KSGFDICPLLRAETDAPILFLTARGSDLDKLTGFALGGDDYVTKPFNPLEVAARVKARLR RNVRTAPEAGGPGAAYSSAEETPEHYDYGRFQVHVQAGELRVQGQSLPCPALVFQLLVFL CRHPNRIFSKQQLYEQVWGTDSYGDDNTVMVHIHRIRERIEENPGDPRFLVTVRGLGYKL VRPAAPQEVRVP >gi|333602556|gb|AFDH01000142.1| GENE 2 817 - 2565 1536 582 aa, chain + ## HITS:1 COG:BS_yvrG KEGG:ns NR:ns ## COG: BS_yvrG COG0642 # Protein_GI_number: 16080374 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Bacillus subtilis # 8 580 1 568 573 317 32.0 3e-86 MTVRKRLILRFVIQLVTVSGFILLLIGGAVAYMLTGMAKLEMNRDFSKAGMSMLVQSVRT ENGKLIFDEALLDKTLRFGGWLQAVDETGAVIQSYGTPADVPAQYEPGQFIDYWTGNKPF PYSLFLWIEEKDGRTYTLLYGKRSTENVLLDEILAAGPPGDKQPEIPASIRERLDRSGAV LQLLDRSGKELASYNRPDSIPAVYTLQDLALRRQYSERYGFASASRSLEDGRTWIVHAPA RGAEQNVFPATEAQVMLTAFVGLAAGLLVLLVGAAFWYGHRFGTPIVHILAWLHRLSRGE YTEPGAAKGRSGSRRRDGRLKRRYRLYGDVMQSMEHLSGALSSAEEAREHLERTRDEWIS GISHDLKTPLASIKGYAHMLETPHYTWTEREIREFAAIIKDKADFMDELIGDLSLTFRLS NGERPQAAEQTELNEFVRRCILGVVNDAEFAHANVSFEPEKEALVRSVDRQALRRILDNL VANAVRHNPSSTQIRVILQEAPEGAASSPRGFTLRVEDNGVGMDKQTLGKLFDRYYRGTN TEGTTRGTGLGMAIARQLALRLGGSIAAESEPGRGTAVTVTL >gi|333602556|gb|AFDH01000142.1| GENE 3 2886 - 4193 1609 435 aa, chain - ## HITS:1 COG:BS_ywdJ KEGG:ns NR:ns ## COG: BS_ywdJ COG2233 # Protein_GI_number: 16080845 # Func_class: F Nucleotide transport and metabolism # Function: Xanthine/uracil permeases # Organism: Bacillus subtilis # 1 426 1 429 460 286 41.0 6e-77 MKLFFSTIQWLAFILAGSLVAPLAVGNALHLPPADIATFMQRTFLLIGVSALLQTLFGHK LPMMEGPAGLWWGIFVVYAGLISSGALALADGLRQLEMGMLLTGALFLLLGALGWIGKIR KLFTPLVTGTYLLILVAQLSGSFMKGLLGIGYLQDAVDSRVALPAFAVLLLSMLLPRTRS RFLRNYSILLSLLTGWVLFMLLGIAPDVPASDAAFALPGIFEWGLPQWDAGILPTSVLIG LLLLANLIASIQVVEKVSGDKNAAAAPVNYNRTSLMMGVSTALGGLFSAMGCVPISGTAG FILTTGLVQRLPFVLASAGMVLISLFPPVTAIFTSLPMPVGYAVIFVPFASMIGLALREY HSLKGGDRDYFIIGVSLMIGIGSLFVPASAIAQLPGLIRTVANNGLVLGMLVCIVLEQFF LYRERSARKKDATAM >gi|333602556|gb|AFDH01000142.1| GENE 4 4458 - 5441 967 327 aa, chain + ## HITS:1 COG:BH0764 KEGG:ns NR:ns ## COG: BH0764 COG0332 # Protein_GI_number: 15613327 # Func_class: I Lipid transport and metabolism # Function: 3-oxoacyl-[acyl-carrier-protein] synthase III # Organism: Bacillus halodurans # 3 326 4 325 332 405 59.0 1e-113 MNSKARISAVGSYVPEKRLTNSDLERLVETNDEWIVQRTGMRERRIAAPGEYTSHMCISA IDNMIAEYGVSLEDVDLILTATNTPDLPFPTVSCLVQAHFGIPSTGALDLNATCAGFVYA LHTANAFITAGLHRKILVLGADHMSAITDYTDRTTCILLGDGAGAALVEAAEGGAPGAFL GHHLGSDGTGGVHLYRSGLADRLGEKILEGAGKLVQNGREVYKFAAGTVPKGVSALLDSA GMAMSEVDWFIPHSANLRIIESVCERMDFPVEKTLYSLEYYGNTSAATIPLSLHMGLKEG KIKPGDLLLLYGFGGGLVHGGLLVRWG >gi|333602556|gb|AFDH01000142.1| GENE 5 5644 - 6096 387 150 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNPRLTEDAWKLEMLQALARSQRAMMRVTEAAAALPVAAVPDAGSSCGESGTAGVNQPAD LLLPPEEFPGGRRPDSAASGLLQTLAAYHFVLQRKIDLLLQPRRRRSKTAAKPWLNTRQR VRSGTRALVCPGGEEPGGNAEGAAASAPAG >gi|333602556|gb|AFDH01000142.1| GENE 6 6093 - 6422 318 109 aa, chain - ## HITS:1 COG:no KEGG:PPSC2_c4311 NR:ns ## KEGG: PPSC2_c4311 # Name: not_defined # Def: protein # Organism: P.polymyxa_SC2 # Pathway: not_defined # 1 93 1 93 110 72 37.0 6e-12 MSREVSYVRILQSVAQMQVSIASILEAKAAEAEKSKAWICSHLTAQQFATHQDQVQQPLE VHDGLIELIEAMTRMEQSLGKHLQIVIGEQENQGGGMGDYSDLLGGGNK >gi|333602556|gb|AFDH01000142.1| GENE 7 6552 - 6842 388 96 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|253575621|ref|ZP_04852957.1| ## NR: gi|253575621|ref|ZP_04852957.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786 str. D14] conserved hypothetical protein [Paenibacillus sp. oral taxon 786 str. D14] # 1 94 1 94 95 63 35.0 5e-09 MEREKDTLVRHISRSHLELAKILHYKSEVAAHMAGLIGQIPDKNPAFADIETLMNQSVNV TRNVTSYLSSLADLEEALATNLGLAVKELESREEHE >gi|333602556|gb|AFDH01000142.1| GENE 8 6979 - 8241 964 420 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_1457 NR:ns ## KEGG: GYMC10_1457 # Name: not_defined # Def: glycosyl transferase family 2 # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 113 394 84 351 356 128 33.0 6e-28 MKRMTTKKKPSGTARGQKPRSRMRTRSGNPGKTGAKTKAGTSLKGRRIAELAAAGRRLGG LLAAGLPVRSASVDGDEAGSCRTDEAAARRQMNDLWARHGGVLNGLNPAGPEYAAAASAF AQGYCERAGLPDKGWFPFPSDQRVSAVILLHGSGPEAFAVQDSPLLRLLGELERLALHEV ILASRDEAVTPQLVQSFAAPRLGAEVKLVGAGGVSAGTVSGGGEERPAAAEAAEGDILVF LDASVSSAAEEIAALAGAIARGSDAALCGISAQLPLFHKRPPEVMAKQFVNYALGRRDLQ ADSLTVLPHALSRQAVTKLGAELAHPAKAHGAALIEGLAVSSVRLSGGDTRSARGVRPFA WLDRSRASDHLEALGLAMERLGPRLFYPDNWRRRGYAAGADSPGIAEEPTVSGDFSRESI >gi|333602556|gb|AFDH01000142.1| GENE 9 8222 - 8866 593 214 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_1456 NR:ns ## KEGG: GYMC10_1456 # Name: not_defined # Def: glycosyl transferase family 2 # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 2 182 75 255 279 196 55.0 7e-49 MNGSTDGSRRIVEKMGPRMIAFDTALGHDVGRAVGARAARGDIVLFTDGDIVIPAAKLSA FVKAVENGADVAMNTYIGPVKRDSVHRVVLAKHALTAMLDRPDLAGTSLTTIPHALSRRA ISDIGAEALAVPPKALALALRKGLNVKAAVYAAVGAKNPRRRKSAGSDPVGDLILGDHLE ALHAWIEAAAFSEGAAEPLPTEIGKEGADEADDD >gi|333602556|gb|AFDH01000142.1| GENE 10 9289 - 9897 547 202 aa, chain - ## HITS:1 COG:no KEGG:PPE_03817 NR:ns ## KEGG: PPE_03817 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 1 201 1 206 215 193 45.0 3e-48 MDLSGIAGKYDLIYSLGENCTPSIQLKRMNLRSYSGVFDWMISELEDISGVLENRFQGFM ELPNLKAIGVDYAGGNFLVKDRKSRIISAHDFPQNQNHIFHLASYPEFRSRLDRRIYRTL HYLTYGKRLLFVRTNASYEEARELERVLNGLVNYDYRVLVINHSNADGITDLQWPLPRTC AVGCYSINPDCWDTLFKDVSLG >gi|333602556|gb|AFDH01000142.1| GENE 11 9926 - 10555 508 209 aa, chain - ## HITS:1 COG:no KEGG:PPE_03817 NR:ns ## KEGG: PPE_03817 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 1 208 1 206 215 254 58.0 2e-66 MRLQDLAGSYDSVFSLGQNCLPAIQMEKHGLRSSAGVLDWMMSDSLADVNRLLGRRFDGF MELAHMSVVEPVTLQPNYQVKDSAYGVISVHDFPVNRNSPEHLFTYGEFKEKLNRRINRF LKKLSEEKRILFIRMHGTYEETAELEQVLNGLVTHEYKILLVEYEQVPGLVELDWPLPHT CAVQVPYADIWNFNSDRWWDTFFADISLK >gi|333602556|gb|AFDH01000142.1| GENE 12 10730 - 11125 497 131 aa, chain + ## HITS:1 COG:no KEGG:PPE_03819 NR:ns ## KEGG: PPE_03819 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 1 127 1 128 140 89 38.0 5e-17 MYKYYQKVEIDPHTHALPLQAGDQEVFLCPLYLYGITPGSRILFKVSIAWSNPVTYDIGE LEINIRRDHPGGPVVESSEDSRFRGGTAKMEGEDEGGAAEIAVYYLTVRSPGGKALIEGP IVFEGFVLEEN >gi|333602556|gb|AFDH01000142.1| GENE 13 11234 - 11698 544 154 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_4163 NR:ns ## KEGG: Pjdr2_4163 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 3 151 4 150 152 68 37.0 1e-10 MATILDYQTNDALIGGGSLPFPVTNPLLGGVELEVATINLTPAATTNLLRFEGTIGWQPD LLLATPLLPILQVRIRVGSPTGTVIYETDDSALIGTGVLTTITDNILTVSFQHSIQASVV PAGSQSYFLTVAVRGLGSISIRGPVHFGAFVIAP >gi|333602556|gb|AFDH01000142.1| GENE 14 11911 - 13134 1244 407 aa, chain - ## HITS:1 COG:BH3380 KEGG:ns NR:ns ## COG: BH3380 COG0438 # Protein_GI_number: 15615942 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Bacillus halodurans # 2 400 1 392 452 246 36.0 6e-65 MLATYWPIPHIGGVWPFMLQLKNRLENWGHQVDLMGNGPDEPKYYIYGTGQKVMKDDLMH MLQAKLNRNTLPVLHQDPLVRRVEMDRYCMELAAASFGLQQYDVIHAQDVIASLALNRVR PPSTGLVASLHGSLAREIKILLDEDGRLDSETLRPLAHLYYRTLEYHGAMAAEKAVTASH WLKNVLSREYGVPAGHIEVSPYGFDMEPFARKLAAGTPLVRPEGKKLIVCPARLETIKGI HFLIGALANLKQRRSDWLCWLIGDGDKRDELIAQVQAAGLEGDVLFLGHREDVPAILALS DIFVHPSVQDNQPFAVMEAQTAGKPAVVSNAGGLPEMVEHGETGFVSMVGDTDTLAYHLE LLLADDELRLKMGEAARLSGCERWSLDRMTEHFVKAYLEAGHSRGRF >gi|333602556|gb|AFDH01000142.1| GENE 15 13399 - 14310 648 303 aa, chain + ## HITS:1 COG:CAC2334 KEGG:ns NR:ns ## COG: CAC2334 COG0451 # Protein_GI_number: 15895601 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Clostridium acetobutylicum # 1 301 1 301 301 266 41.0 3e-71 MKALVTGGAGFIGSHLAQALADGGHEVHVLDNLSSGRAEWVPGQAVLHVLELNSPELHEL VERIRPEVVFHLAAQADVQRSIADPAFDAQVNITGTVSLLDACRKSAVRRFVFASTSGVY GDSVHEKLTEDIPAAPISYYGQSKLAAEGYIRIFHKLYGLPYTILRYGNVYGPRQTPKGE GGVVAVFLQQLRRGQPITIHGDGGQTRDFVYVRDVVEANLAAAASTGCGLYHVSTGRSTT IRQLAELIRETRSAPVPVLFGEARPGDIRHSCLDNRRIREELGWSPRYRIADGLRETCAA FLP >gi|333602556|gb|AFDH01000142.1| GENE 16 14556 - 15596 921 346 aa, chain - ## HITS:1 COG:no KEGG:Dhaf_0891 NR:ns ## KEGG: Dhaf_0891 # Name: not_defined # Def: glycosyl transferase group 1 # Organism: D.hafniense_DCB-2 # Pathway: not_defined # 1 337 1 324 332 154 31.0 4e-36 MRLVFPILTLNFGGAQRMLAEITNGLADRGYDVTIVMPAHAEVKFDIRARIVRGRHSITL DADDIPPGDVVISNFYTTVPACVEASARDRSVHARFSLCYEPTFLPDDHITFPTYHTTPH LIVLSEWQQKLIELNHGIRGHIVPIGLGPFMQNLNLRESTPPAVKISAVVRNSEGGIAWH RDQDYLVSQLAFVKHHYPDTEINLICPPDEFHTAPSLQRLRDTGSFQFCLPNNDEELRYL YNKTDIYVSSSLYDSGSLPGLEAMRCGAALVTTYSGGNADYARHERNCLLSYRYQNRLAA DIVRLIHDKELRARLALQGQYDSYQWPWARSVDAFAQAIHDIWNSR >gi|333602556|gb|AFDH01000142.1| GENE 17 15652 - 15834 248 60 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSEKVYVMGDLYNSLFSVQVSNPEYLVDYKLWNQIRAGLPDNYRMPDPVIQHILNSHPNG >gi|333602556|gb|AFDH01000142.1| GENE 18 15866 - 17092 1142 408 aa, chain - ## HITS:1 COG:BH3380 KEGG:ns NR:ns ## COG: BH3380 COG0438 # Protein_GI_number: 15615942 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Bacillus halodurans # 5 404 1 395 452 214 32.0 2e-55 MKILLATYWRLPHLGGVWPLMVKMKEKLEALGHEVDVFGNSEDESVFHMPFSGRVFHKEA VRPFLEKKISPELYPVLHSSSWLSHFEMNTLCMELAAAYFGLEQYDVIHTQDVLATRSFR RVKSPRTGLVASLHGSVAHEIKLHLVENNVNLGESLIWRFQSAIEHLGATSSDITIASSQ WLKRLLTTEYSVPEQQVEVFQYGYATGDFYAQMESSATPIYKPPGKKAIIFTGRLIPIKG VSLLIEAVGLLRTVRDDFVCWIVGEGDLEAELNRQCTELGLLDTVQFLGRRSDVPYLLAQ SDIFVQPSYVDNQPLSLIEAQLAGKPSVVSDATGVPEMVEHGRTGLIFPSGNSQQLFTHL YTLLENTAMREAMGREAGQWGAVHWSMDLMVQRLLDVYGRAIAKAAQA >gi|333602556|gb|AFDH01000142.1| GENE 19 17292 - 17645 402 117 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315646703|ref|ZP_07899819.1| ## NR: gi|315646703|ref|ZP_07899819.1| hypothetical protein PVOR_15024 [Paenibacillus vortex V453] hypothetical protein PVOR_15024 [Paenibacillus vortex V453] # 1 115 1 111 111 79 38.0 9e-14 MSIYLFDAYEFGPYDSRYIQCFDLVFQNIAQRHFDVLIQGYQGQNRFLLGLYHLDPAPLP GSIAHLPTVYNHNRPFTLHIHTNLTNPYPLTMAMYAKNEGVLVATFTTNELTVIDPL >gi|333602556|gb|AFDH01000142.1| GENE 20 17780 - 18151 417 123 aa, chain - ## HITS:1 COG:no KEGG:PPE_03823 NR:ns ## KEGG: PPE_03823 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 1 122 1 121 125 111 56.0 8e-24 MAFTTGMLINTRDFGTASANAAVIINNEDAVNTAQIAVEIFYTLSTGVAKTPLYFQTYTV PPKFVDIRTFFISGVLAYEVQIAVVAPQPGLVVASVFGLDTFNNIVPAHRVLQSELTPIP ALG >gi|333602556|gb|AFDH01000142.1| GENE 21 18301 - 19521 961 406 aa, chain - ## HITS:1 COG:no KEGG:PPE_03821 NR:ns ## KEGG: PPE_03821 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 1 406 1 406 408 363 53.0 8e-99 MANSQVSPAGTLAQTPSVAANYLTALNIVASATDFTTGAARVAVYRSVDQGISWGPLILP LPAGYIGGESNVVAYGFPNIFIVASHVFDAAGNGSIAVYTSTDNGITFGSPVIAAQGFTT FINNVQVNAVFDNSQVSTYQGSVYLVYVHQFNTDFVGGSVIFFQRSLDNGQTWLRPALVS PDADFVTRGDVVAGLTGIVYVAYISLTPFTRFEVSRSLDGGATFQTPVIVSPVTLVPSVL PVTGYGFEVPTGANIAVDNSALSTSGTLYAVWQDNRQGYADVFLSRSFDQGLTWTAPVSV TSAPAGTQNFFPSIDVSPKSGLVTILYYSNQIDGFDLDTYVAISADGGATFFNRRESTAS SNPNAGSATPVPSIGNYTDISTIPPFGFIGVWTDTRTGAQAIFSGN >gi|333602556|gb|AFDH01000142.1| GENE 22 19547 - 20845 1041 432 aa, chain - ## HITS:1 COG:no KEGG:PPE_03822 NR:ns ## KEGG: PPE_03822 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 27 431 4 407 413 469 59.0 1e-130 MSIAETNLRHTLEYKIIRIRQEAPMPNFQVNASGNPKQEPSIAVNLLDANIMIATATDFT LGPPLTGVYRSQDAGVNWTNSFLPLPPGFTGAEAAFAAYGFPNLFLIVAHVFPGNSSGTI AAYRSTDNGLSFSAPIIVNPGYGTFINNDWTKVFFDNSQSSPFLGNAYVTYNRQYNVDSG GFSVAAFQRSLDGGVTWEAPLVLSNVRRDTERADIGIDLQGGLHFGWIDTTSAQPAFFVR RSLDGGATFGSPILVSDVTLVPNVLPVPGYGFRVLNFSNVMADTALVSPGRGNIYAVWQD NRQGYADVYLSRSADQGLTWNTPIPITDSPAGAQNFFPAITVSPKTGTITVIYYTNRLNG FDLDVYAAQSRDGGSTFTNIRVTTTSFNPNGDSPVPVPLIGDYIDVDTVPPDNFYGVWTD TRTGSQVTWGGF >gi|333602556|gb|AFDH01000142.1| GENE 23 20980 - 22176 873 398 aa, chain + ## HITS:1 COG:RP446 KEGG:ns NR:ns ## COG: RP446 COG0463 # Protein_GI_number: 15604311 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Rickettsia prowazekii # 2 251 5 234 280 117 33.0 5e-26 MSDVGIVMPVYLQRPSYLQEAIETILNQTYADFRFIIVIDGVSEQMGPQIRQLTAHDTRV EIVENERNLGVSASLNRGFRRLFEDPDIRYVTWVSSDNRTHPYFIELLRHELAHAPKEVG LVYSCFREIDADGLPLRDEAFQEEFRRYQNKPKEELLDVCIVGVSFMYKSCYARKIGGYH MEPVEDYEYWLRLSHLCELRYIPVELVEYRVDSDFSISAKLKGSVEQHRRWRHAFRLTKK QARERQSIPLETTVYLPVADASGSLPDRLDHLLDQYYSNFQVVVVDVTPERASTGLLHGI RDPLLSTRFFPGMPPIEAVHTCLKKLATPFAAIAYRERDFEYMDLQVLTTALRSAPEGAY SVCYNGDRSDLAYRFDPRAGMPSTELFRSAKLKELLLR >gi|333602556|gb|AFDH01000142.1| GENE 24 22256 - 23338 840 360 aa, chain - ## HITS:1 COG:BH3382 KEGG:ns NR:ns ## COG: BH3382 COG0438 # Protein_GI_number: 15615944 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Bacillus halodurans # 1 353 1 354 356 270 38.0 2e-72 MKLLFVFYIPSGGMETLNRQRVIALKKIGITCSLLYLHEGTGMQNLDGVPVYVTKDEKEI TELVNRERFEAVIISTVAELILPLRSSGYTGKIIYEAQGLGSVEEAEFILKRIIPLLTLH ADAVLYPRTPHLIRMFETYYARMKRFSFHNCIDMESFRFERHPVAPVPIIGWVGRIEPNK NWRSFLEVGRLFKTRGRPVEIRMYVDNTLGSEEGEFRKLVADYELGSRLTVLANLPHKEM ARQYSVIGDSGGVLLSTSRVEGFGYAVLEAMCCRCPVVSTDSDGVRSFIADRVTGRFYPH DDHEEAFRQISELMDNVPLREEIRFRASRHAAEQFSPGLYARQFSCMLGALGIGLVKQHG >gi|333602556|gb|AFDH01000142.1| GENE 25 23383 - 24126 612 247 aa, chain - ## HITS:1 COG:RP339 KEGG:ns NR:ns ## COG: RP339 COG0463 # Protein_GI_number: 15604207 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Rickettsia prowazekii # 3 210 8 213 318 137 41.0 2e-32 MPPRVSIIIPFYNCAYVDQAIVSALSQTYPDREIIVVDDGSTLHQDKITPYLPWIHYLGK ANGGTASALNHGIRHASGDYIAWLSSDDRFHPHKLAVQLNGLASANADISFTNYEIVDEH GRVLYAPNFPTDPGNTQYFNTSTKLYTYMLQYNPINGCTVLMHKNLFHRYGYFDETCKYT QDLEMWLRLAAAGVRIEFVNEKLTQYRLHGEMGSRNHQPAIQREVDRLRAHYNPLLAARI ASLGAGG >gi|333602556|gb|AFDH01000142.1| GENE 26 24158 - 25003 676 281 aa, chain - ## HITS:1 COG:RP339 KEGG:ns NR:ns ## COG: RP339 COG0463 # Protein_GI_number: 15604207 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Rickettsia prowazekii # 3 248 8 254 318 135 33.0 9e-32 MLPKVTVVIPFYNCPYVDQAVSSVLNQTYTNIELIVVDDGSTLHKEKLEPYMDRLIYIGK ENGGAASALNMGFALATGDYVAWLSSDDLFYPDKIGRQVQFMLERSSIFSHTAFDQIDEA GAVTQANVASRYRYPHEFTRAFLSICPVNGCTVMMRRDLFGAVGYFDETLRYTQDYEFWI RVLLTGFPLDFLDAPLTLYRLHGGMGTMLYQPAIWEEVLSVRSRYRPYLLRYSRSQRRLL SGRRHPALRPRKRPAARPRKRPANTLKSRKVKAGKGVKKRR >gi|333602556|gb|AFDH01000142.1| GENE 27 25041 - 26048 820 335 aa, chain - ## HITS:1 COG:PA5454 KEGG:ns NR:ns ## COG: PA5454 COG0451 # Protein_GI_number: 15600647 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Pseudomonas aeruginosa # 106 325 54 290 304 99 30.0 9e-21 MPRILITGAGGFTGRAACDYFVSKGYEVAAVVRNAGAAHVKPGNGEAPVVPDRADASGVP PGSNGPSAAQESESAKPGTGMPAGKLYSCDLTRQEDVKALVAETGPDWVLHLAGRNSVAE SWKDPAAFLQANVMASVYLLEALRTRPGTRVLVAGSMLGAAEPGEPLPHPYGFSKMLLLY AARSWHRWFSQQIMVALPSNLIGPGPSGGICGLLARKIVALEKGGPPEPFRLSSLGEERD YLDVRDAVTAYETILGHGEPGAVYRIGSDRLRPLGEIVSVFRSLTPAALPLEVENKPRPE PARPMDVSALKALGWSARIPFETSLSDALDYYRRN >gi|333602556|gb|AFDH01000142.1| GENE 28 26033 - 26875 899 280 aa, chain - ## HITS:1 COG:RC0456 KEGG:ns NR:ns ## COG: RC0456 COG1091 # Protein_GI_number: 15892379 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-4-dehydrorhamnose reductase # Organism: Rickettsia conorii # 1 272 1 283 284 178 38.0 8e-45 MKLLVTGGQGMAGHVMVRYLRRLPGFQVAYTTRDGSDREGLLADARDTVRIRGIIETFRP DAVINCIGVLNQFAEADPVNAYRVNGIFPHDLAEAALGAGGRLIHISTDCVFSGRHGDHT EDDVPDGTSVYGRSKALGEVREAPHLTVRTSIIGPEIRESGIGLLHWFLSREGEVGGYTR AYWNGVTTLELAKFVEHALQRPELTGLVHLTAPVKVSKYELLNLFRKQFGRTDIEVRKNA SVRLNRTLKNTRSDLNYAIPGYETMLKELDEWMCAQCLES >gi|333602556|gb|AFDH01000142.1| GENE 29 26872 - 27858 1081 328 aa, chain - ## HITS:1 COG:CAC2194 KEGG:ns NR:ns ## COG: CAC2194 COG1086 # Protein_GI_number: 15895462 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Predicted nucleoside-diphosphate sugar epimerases # Organism: Clostridium acetobutylicum # 2 327 4 340 340 245 42.0 1e-64 MFRNTRILVTGGTGSWGYELIRQLLPQEPKEIIVFSRNESTQVAMQRSFEDNRLSFCIGD IRDREALIRATEEVDYVFHLAALKHVPVCEEQPYEALKTNVVGTQYVIEAAIENKVKKVI YISTDKAANPSNFYGMTKAIGEKLIVQANLLRTDTKFVCVRGGNVLGTNGSVIHLFHKQI HEKNQISITDKAMTRFFLTLEEAISLLFKASEESVGGEIFVMTMPTCKILDLADVLIEAS GKTGVAIVETGTRPGEKIHEILLTEFESQTTVLYDEVYLVILPTLEIPGLKDHYAPYPKA EISSFSSKDNVMEKEAIRALLVKGGFLA >gi|333602556|gb|AFDH01000142.1| GENE 30 27848 - 28942 1160 364 aa, chain - ## HITS:1 COG:SA0150 KEGG:ns NR:ns ## COG: SA0150 COG0381 # Protein_GI_number: 15925859 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine 2-epimerase # Organism: Staphylococcus aureus N315 # 1 356 4 360 374 308 43.0 1e-83 MKIVTLLGTRPEIIRLSLIMRKLDELAEKHVVVHTGQNFTYTLSDVFFRELGLRQPDHVL QDRQQSLGAQLATMFGELETILNTERPDRVLLLGDTNSALGAVLAERMGIPVIHMEAGNR CYDLTVPEEKNRRIIDAVSTINMPYTKQSKEHLVREGVPSQRIVRTGNPIYEVLRHYSGQ IEQSDVLERLNLTPGGYFAATIHRAENVDHPVHLREIMNGLSGVAERFGKRILCSLHPRT KSRLEAEDSLSIHPLVEFHEPFGFFDFVKLEKNADCVLTDSGTVQEECCIFHVPTVTVRR TTERPETIDCGSNVVSGLDAKRIVSAAGLMTRMPREWECPEGYLDTDVSAKVVKYVLGGN LHVS Prediction of potential genes in microbial genomes Time: Sun Jul 17 11:04:10 2011 Seq name: gi|333602071|gb|AFDH01000143.1| Paenibacillus sp. HGF7 contig00012, whole genome shotgun sequence Length of sequence - 174319 bp Number of predicted genes - 153, with homology - 136 Number of transcription units - 67, operones - 28 average op.length - 4.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 7 - 345 226 ## + Term 360 - 407 6.3 - Term 353 - 389 8.1 2 2 Tu 1 . - CDS 412 - 3051 2605 ## COG0826 Collagenase and related proteases - Prom 3151 - 3210 5.2 - Term 3308 - 3345 6.0 3 3 Tu 1 . - CDS 3384 - 5456 2231 ## COG3325 Chitinase - Prom 5682 - 5741 2.4 4 4 Tu 1 . + CDS 6262 - 7647 1451 ## COG0423 Glycyl-tRNA synthetase (class II) + Term 7736 - 7804 14.7 - Term 7733 - 7779 12.0 5 5 Tu 1 . - CDS 7809 - 9953 2293 ## COG0840 Methyl-accepting chemotaxis protein - Prom 9978 - 10037 5.0 + Prom 10003 - 10062 4.1 6 6 Tu 1 . + CDS 10132 - 13353 3064 ## SRU_1158 FG-GAP repeat-containing protein + Term 13388 - 13444 5.0 7 7 Op 1 . + CDS 13477 - 13728 271 ## 8 7 Op 2 . + CDS 13733 - 14926 970 ## COG0172 Seryl-tRNA synthetase 9 7 Op 3 . + CDS 14938 - 15843 859 ## 10 7 Op 4 . + CDS 15807 - 15917 127 ## 11 7 Op 5 . + CDS 15997 - 17148 1073 ## COG1696 Predicted membrane protein involved in D-alanine export + Prom 17207 - 17266 6.8 12 8 Tu 1 . + CDS 17303 - 18271 1003 ## COG1082 Sugar phosphate isomerases/epimerases + Term 18288 - 18323 5.1 - Term 18268 - 18319 11.5 13 9 Tu 1 . - CDS 18350 - 18550 205 ## - Prom 18696 - 18755 6.7 + Prom 18680 - 18739 5.7 14 10 Tu 1 . + CDS 18855 - 20471 1395 ## COG0155 Sulfite reductase, beta subunit (hemoprotein) + Term 20584 - 20637 17.4 - Term 20642 - 20694 12.2 15 11 Tu 1 . - CDS 20742 - 23633 2218 ## COG0178 Excinuclease ATPase subunit - Prom 23803 - 23862 4.2 - Term 23896 - 23929 1.1 16 12 Op 1 . - CDS 24014 - 24091 69 ## 17 12 Op 2 . - CDS 24102 - 26099 1719 ## COG0556 Helicase subunit of the DNA excision repair complex - Prom 26268 - 26327 11.4 + Prom 26241 - 26300 9.0 18 13 Op 1 19/0.000 + CDS 26390 - 27190 1019 ## COG1291 Flagellar motor component 19 13 Op 2 . + CDS 27174 - 28001 771 ## COG1360 Flagellar motor protein + Term 28071 - 28113 8.3 - Term 28109 - 28149 0.6 20 14 Op 1 2/0.000 - CDS 28250 - 29539 952 ## COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain - Prom 29595 - 29654 3.9 21 14 Op 2 1/0.000 - CDS 29715 - 31169 1615 ## COG0793 Periplasmic protease 22 14 Op 3 2/0.000 - CDS 31265 - 32521 1074 ## COG0739 Membrane proteins related to metalloendopeptidases 23 14 Op 4 28/0.000 - CDS 32566 - 33468 816 ## COG2177 Cell division protein 24 14 Op 5 . - CDS 33473 - 34159 350 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) - Prom 34209 - 34268 3.8 + Prom 34195 - 34254 2.8 25 15 Tu 1 . + CDS 34418 - 35860 671 ## COG2720 Uncharacterized vancomycin resistance protein - Term 35834 - 35868 -0.9 26 16 Op 1 16/0.000 - CDS 35988 - 37403 1401 ## COG0165 Argininosuccinate lyase - Term 37423 - 37452 3.5 27 16 Op 2 1/0.000 - CDS 37503 - 38741 1422 ## COG0137 Argininosuccinate synthase 28 16 Op 3 9/0.000 - CDS 38774 - 39730 1018 ## COG0078 Ornithine carbamoyltransferase 29 16 Op 4 13/0.000 - CDS 39796 - 40986 1185 ## COG4992 Ornithine/acetylornithine aminotransferase 30 16 Op 5 10/0.000 - CDS 41028 - 41813 783 ## COG0548 Acetylglutamate kinase 31 16 Op 6 11/0.000 - CDS 41859 - 43085 1383 ## COG1364 N-acetylglutamate synthase (N-acetylornithine aminotransferase) - Prom 43105 - 43164 4.3 32 16 Op 7 . - CDS 43172 - 44221 934 ## COG0002 Acetylglutamate semialdehyde dehydrogenase - Prom 44253 - 44312 9.4 - Term 44322 - 44381 6.2 33 17 Tu 1 . - CDS 44471 - 45355 932 ## COG1284 Uncharacterized conserved protein - Prom 45464 - 45523 4.9 - Term 45885 - 45933 2.1 34 18 Tu 1 . - CDS 45939 - 46940 913 ## COG1186 Protein chain release factor B - Prom 47136 - 47195 4.5 - Term 47167 - 47213 13.0 35 19 Tu 1 . - CDS 47250 - 49754 2604 ## COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase) - Prom 49968 - 50027 6.1 - Term 50148 - 50182 3.1 36 20 Tu 1 . - CDS 50248 - 50796 536 ## PROTEIN SUPPORTED gi|30023223|ref|NP_834854.1| sigma (54) modulation protein / SSU ribosomal protein S30P - Prom 50817 - 50876 6.4 - Term 50905 - 50942 6.2 37 21 Op 1 3/0.000 - CDS 50994 - 51191 215 ## COG1278 Cold shock proteins - Prom 51237 - 51296 6.5 38 21 Op 2 . - CDS 51436 - 52194 451 ## COG0500 SAM-dependent methyltransferases 39 21 Op 3 . - CDS 52260 - 52682 112 ## - Prom 52899 - 52958 3.9 40 22 Tu 1 . - CDS 54044 - 54697 277 ## Ccel_0103 hypothetical protein - Term 54874 - 54910 -0.6 41 23 Tu 1 . - CDS 55147 - 55278 99 ## - Prom 55418 - 55477 4.6 42 24 Tu 1 . - CDS 55732 - 56190 -34 ## COG0463 Glycosyltransferases involved in cell wall biogenesis - Prom 56362 - 56421 5.1 - Term 56416 - 56454 8.6 43 25 Op 1 . - CDS 56462 - 60145 553 ## COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain 44 25 Op 2 . - CDS 60153 - 60326 122 ## - Prom 60409 - 60468 3.5 45 26 Op 1 15/0.000 - CDS 60496 - 60888 282 ## COG1516 Flagellin-specific chaperone FliS 46 26 Op 2 . - CDS 60930 - 61631 218 ## COG1345 Flagellar capping protein - Prom 61746 - 61805 2.4 + Prom 61584 - 61643 3.3 47 27 Tu 1 . + CDS 61775 - 61852 63 ## + Prom 62496 - 62555 4.1 48 28 Tu 1 . + CDS 62677 - 62775 56 ## - Term 62805 - 62840 6.3 49 29 Op 1 2/0.000 - CDS 62852 - 63673 333 ## COG1344 Flagellin and related hook-associated proteins 50 29 Op 2 5/0.000 - CDS 63839 - 64066 268 ## COG1551 Carbon storage regulator (could also regulate swarming and quorum sensing) 51 29 Op 3 . - CDS 64068 - 64499 292 ## COG1699 Uncharacterized protein conserved in bacteria - Term 64510 - 64555 5.5 52 30 Op 1 . - CDS 64563 - 65135 363 ## BBR47_53380 hypothetical protein 53 30 Op 2 21/0.000 - CDS 65148 - 66059 303 ## COG1344 Flagellin and related hook-associated proteins 54 30 Op 3 . - CDS 66073 - 67638 1277 ## COG1256 Flagellar hook-associated protein 55 30 Op 4 . - CDS 67690 - 68190 438 ## PPE_04414 hypothetical protein 56 30 Op 5 . - CDS 68216 - 68479 346 ## PPE_04415 negative regulator of flagellin synthesis (anti-sigma-D factor) - Prom 68536 - 68595 3.2 - Term 68544 - 68582 2.1 57 31 Tu 1 . - CDS 68624 - 69034 190 ## PPE_04416 hypothetical protein - Prom 69073 - 69132 5.0 58 32 Tu 1 . - CDS 69171 - 69686 214 ## COG1040 Predicted amidophosphoribosyltransferases - Term 69775 - 69816 -0.7 59 33 Tu 1 . - CDS 70017 - 71567 620 ## COG4098 Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) - Prom 71633 - 71692 2.6 - Term 72199 - 72242 1.5 60 34 Op 1 . - CDS 72345 - 72737 244 ## gi|322382402|ref|ZP_08056305.1| hypothetical protein PL1_3024 61 34 Op 2 19/0.000 - CDS 72788 - 73513 697 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 62 34 Op 3 . - CDS 73485 - 74672 889 ## COG4585 Signal transduction histidine kinase 63 34 Op 4 . - CDS 74761 - 77379 2016 ## GYMC10_5883 copper amine oxidase domain protein - Prom 77553 - 77612 4.3 - Term 77766 - 77819 12.2 64 35 Op 1 . - CDS 77860 - 79062 695 ## COG0192 S-adenosylmethionine synthetase - Prom 79099 - 79158 2.1 - Term 79111 - 79150 4.3 65 35 Op 2 . - CDS 79215 - 79493 210 ## GYMC10_5885 small acid-soluble spore protein alpha/beta type - Prom 79594 - 79653 6.8 - Term 79640 - 79685 12.1 66 36 Op 1 . - CDS 79724 - 80305 341 ## PPE_04430 hypothetical protein - Term 80320 - 80346 -1.0 67 36 Op 2 . - CDS 80366 - 83407 1170 ## Pjdr2_0596 S-layer domain protein - Term 83778 - 83816 7.6 68 37 Tu 1 . - CDS 83832 - 87701 3293 ## GYMC10_5889 S-layer domain protein - Prom 87814 - 87873 4.5 - Term 87882 - 87915 3.1 69 38 Tu 1 . - CDS 87967 - 89079 854 ## COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase - Prom 89123 - 89182 4.6 70 39 Op 1 . - CDS 89198 - 89977 718 ## COG1922 Teichoic acid biosynthesis proteins 71 39 Op 2 . - CDS 89993 - 91141 1109 ## COG2327 Uncharacterized conserved protein 72 39 Op 3 . - CDS 91105 - 93168 1551 ## GYMC10_5893 hypothetical protein - Term 93205 - 93253 1.2 73 40 Op 1 . - CDS 93268 - 94962 1676 ## COG1109 Phosphomannomutase 74 40 Op 2 . - CDS 95008 - 95436 465 ## COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases - Prom 95541 - 95600 2.5 - Term 95488 - 95540 1.3 75 41 Tu 1 . - CDS 95638 - 96192 193 ## PROTEIN SUPPORTED gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase - Prom 96248 - 96307 4.0 - Term 96275 - 96301 -1.0 76 42 Op 1 . - CDS 96309 - 96572 186 ## gi|322383078|ref|ZP_08056905.1| hypothetical protein PL1_1927 77 42 Op 2 8/0.000 - CDS 96596 - 97465 1053 ## COG4786 Flagellar basal body rod protein 78 42 Op 3 2/0.000 - CDS 97542 - 98360 720 ## COG4786 Flagellar basal body rod protein 79 42 Op 4 . - CDS 98370 - 99371 883 ## COG1077 Actin-like ATPase involved in cell morphogenesis - Prom 99441 - 99500 4.2 80 43 Tu 1 . - CDS 99539 - 99829 320 ## PPSC2_c4949 sporulation transcriptional regulator spoiiid - Prom 99921 - 99980 2.3 + Prom 99813 - 99872 3.1 81 44 Tu 1 . + CDS 99892 - 99996 73 ## + Term 100046 - 100091 2.1 - Term 99975 - 100013 7.1 82 45 Op 1 . - CDS 100028 - 100774 777 ## COG0739 Membrane proteins related to metalloendopeptidases 83 45 Op 2 3/0.000 - CDS 100852 - 101892 862 ## COG2385 Sporulation protein and related proteins - Prom 102000 - 102059 2.0 - Term 102025 - 102073 11.1 84 46 Op 1 2/0.000 - CDS 102118 - 103440 1061 ## COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase 85 46 Op 2 . - CDS 103606 - 103857 305 ## COG4836 Predicted membrane protein 86 46 Op 3 . - CDS 103862 - 106414 1944 ## COG1404 Subtilisin-like serine proteases - Prom 106441 - 106500 8.1 - Term 106488 - 106537 12.0 87 47 Op 1 22/0.000 - CDS 106551 - 108065 1251 ## COG1007 NADH:ubiquinone oxidoreductase subunit 2 (chain N) 88 47 Op 2 30/0.000 - CDS 108069 - 109697 1711 ## COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M) 89 47 Op 3 26/0.000 - CDS 109687 - 111561 1575 ## COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit 90 47 Op 4 30/0.000 - CDS 111644 - 111955 405 ## COG0713 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) 91 47 Op 5 28/0.000 - CDS 111957 - 112487 730 ## COG0839 NADH:ubiquinone oxidoreductase subunit 6 (chain J) 92 47 Op 6 31/0.000 - CDS 112480 - 112932 516 ## COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) 93 47 Op 7 8/0.000 - CDS 112978 - 113985 1069 ## COG1005 NADH:ubiquinone oxidoreductase subunit 1 (chain H) 94 47 Op 8 22/0.000 - CDS 113985 - 115082 1107 ## COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit 7 95 47 Op 9 34/0.000 - CDS 115087 - 116058 621 ## COG0852 NADH:ubiquinone oxidoreductase 27 kD subunit 96 47 Op 10 30/0.000 - CDS 116055 - 116573 498 ## PROTEIN SUPPORTED gi|154175216|ref|YP_001407461.1| NADH dehydrogenase subunit B 97 47 Op 11 . - CDS 116558 - 116923 245 ## PROTEIN SUPPORTED gi|154175415|ref|YP_001407462.1| NADH dehydrogenase subunit A - Prom 117031 - 117090 10.5 - Term 117061 - 117108 10.2 98 48 Op 1 42/0.000 - CDS 117113 - 117517 302 ## COG0355 F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) 99 48 Op 2 42/0.000 - CDS 117665 - 119074 992 ## COG0055 F0F1-type ATP synthase, beta subunit 100 48 Op 3 42/0.000 - CDS 119119 - 119982 676 ## COG0224 F0F1-type ATP synthase, gamma subunit 101 48 Op 4 41/0.000 - CDS 120031 - 121545 1121 ## COG0056 F0F1-type ATP synthase, alpha subunit 102 48 Op 5 38/0.000 - CDS 121562 - 122110 355 ## COG0712 F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) 103 48 Op 6 37/0.000 - CDS 122107 - 122592 496 ## COG0711 F0F1-type ATP synthase, subunit b 104 48 Op 7 40/0.000 - CDS 122703 - 122915 269 ## COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K 105 48 Op 8 . - CDS 123022 - 123801 734 ## COG0356 F0F1-type ATP synthase, subunit a 106 48 Op 9 . - CDS 123828 - 124196 242 ## Pjdr2_5825 ATP synthase I 107 48 Op 10 . - CDS 124189 - 124422 238 ## gi|167463127|ref|ZP_02328216.1| hypothetical protein Plarl_11291 - Prom 124443 - 124502 5.2 108 49 Op 1 2/0.000 - CDS 124620 - 125756 925 ## COG0381 UDP-N-acetylglucosamine 2-epimerase 109 49 Op 2 5/0.000 - CDS 125781 - 126410 635 ## COG0035 Uracil phosphoribosyltransferase - Prom 126470 - 126529 5.9 - Term 126601 - 126632 0.9 110 49 Op 3 3/0.000 - CDS 126650 - 127900 1302 ## COG0112 Glycine/serine hydroxymethyltransferase - Prom 127930 - 127989 2.1 111 49 Op 4 2/0.000 - CDS 128004 - 128663 535 ## COG4475 Uncharacterized protein conserved in bacteria 112 49 Op 5 2/0.000 - CDS 128693 - 129151 536 ## COG0698 Ribose 5-phosphate isomerase RpiB - Term 129428 - 129470 -0.5 113 49 Op 6 2/0.000 - CDS 129499 - 130080 407 ## COG0394 Protein-tyrosine-phosphatase 114 49 Op 7 2/0.000 - CDS 130165 - 130737 723 ## COG1971 Predicted membrane protein - Prom 130849 - 130908 4.1 - Term 130931 - 130957 1.0 115 49 Op 8 . - CDS 130979 - 132064 971 ## COG0009 Putative translation factor (SUA5) 116 49 Op 9 . - CDS 132094 - 132804 716 ## Pjdr2_5840 stage II sporulation protein R - Prom 132946 - 133005 3.4 117 50 Op 1 32/0.000 - CDS 133470 - 134372 176 ## PROTEIN SUPPORTED gi|225082709|ref|YP_002653927.1| protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific 118 50 Op 2 . - CDS 134380 - 135450 1150 ## COG0216 Protein chain release factor A - Prom 135510 - 135569 2.1 119 51 Tu 1 . - CDS 135666 - 136766 1329 ## COG0012 Predicted GTPase, probable translation factor - Prom 136808 - 136867 10.8 - Term 136907 - 136950 2.5 120 52 Tu 1 . - CDS 137040 - 137495 414 ## - Prom 137583 - 137642 5.9 - Term 137597 - 137647 4.1 121 53 Tu 1 . - CDS 137681 - 139108 1401 ## COG1113 Gamma-aminobutyrate permease and related permeases + Prom 139328 - 139387 5.3 122 54 Op 1 1/0.000 + CDS 139461 - 140687 1150 ## COG2508 Regulator of polyketide synthase expression + Prom 140737 - 140796 1.7 123 54 Op 2 . + CDS 140825 - 141958 1478 ## COG0686 Alanine dehydrogenase + Term 142014 - 142040 1.7 124 55 Tu 1 . + CDS 142114 - 143316 971 ## COG0787 Alanine racemase + Term 143380 - 143421 3.2 125 56 Tu 1 . + CDS 143913 - 144446 489 ## COG0590 Cytosine/adenosine deaminases + Term 144455 - 144487 2.4 + TRNA 144528 - 144601 76.0 # Arg CCT 0 0 + Prom 144911 - 144970 4.7 126 57 Tu 1 . + CDS 145058 - 145159 61 ## + Term 145255 - 145298 1.1 + Prom 145166 - 145225 3.2 127 58 Op 1 . + CDS 145327 - 146211 566 ## COG1830 DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes 128 58 Op 2 . + CDS 146208 - 146969 579 ## COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold 129 58 Op 3 . + CDS 146997 - 148346 582 ## COG1541 Coenzyme F390 synthetase 130 58 Op 4 . + CDS 148365 - 149654 1317 ## COG1465 Predicted alternative 3-dehydroquinate synthase 131 58 Op 5 . + CDS 149720 - 150949 820 ## COG1541 Coenzyme F390 synthetase + Term 151000 - 151040 6.0 - Term 150982 - 151031 11.4 132 59 Tu 1 . - CDS 151054 - 153210 1646 ## COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain - Prom 153260 - 153319 7.7 - Term 153331 - 153371 6.3 133 60 Tu 1 . - CDS 153407 - 155395 1903 ## Dred_3110 hypothetical protein - Term 155555 - 155586 3.4 134 61 Tu 1 . - CDS 155631 - 157178 216 ## PROTEIN SUPPORTED gi|163764795|ref|ZP_02171848.1| ribosomal protein L30 - Prom 157211 - 157270 6.0 - Term 157318 - 157348 3.0 135 62 Tu 1 . - CDS 157363 - 157587 89 ## - Prom 157679 - 157738 2.9 - TRNA 157395 - 157471 91.8 # Pro CGG 0 0 136 63 Op 1 . + CDS 157658 - 158527 870 ## COG1131 ABC-type multidrug transport system, ATPase component 137 63 Op 2 . + CDS 158520 - 160730 1610 ## Btus_2086 hypothetical protein 138 63 Op 3 . + CDS 160727 - 161443 549 ## Btus_2085 hypothetical protein 139 63 Op 4 . + CDS 161487 - 162104 441 ## COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 140 63 Op 5 . + CDS 162097 - 162933 666 ## GYMC10_5591 hypothetical protein 141 63 Op 6 . + CDS 162930 - 163772 647 ## COG1131 ABC-type multidrug transport system, ATPase component 142 64 Op 1 . + CDS 163944 - 164468 559 ## COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 143 64 Op 2 . + CDS 164465 - 165013 325 ## Bcell_0857 hypothetical protein 144 64 Op 3 . + CDS 165003 - 166145 871 ## Pjdr2_0122 hypothetical protein + Term 166163 - 166199 4.2 145 65 Tu 1 . - CDS 166247 - 166828 433 ## COG0526 Thiol-disulfide isomerase and thioredoxins - Prom 166898 - 166957 3.3 - Term 166923 - 166962 6.8 146 66 Op 1 . - CDS 167210 - 167359 101 ## 147 66 Op 2 . - CDS 167402 - 167548 101 ## 148 66 Op 3 . - CDS 167580 - 167930 417 ## GYMC10_0080 hypothetical protein - Prom 168115 - 168174 1.8 - TRNA 168139 - 168228 70.5 # Ser TGA 0 0 - Term 168249 - 168292 0.1 149 67 Op 1 2/0.000 - CDS 168311 - 169594 1338 ## COG0172 Seryl-tRNA synthetase - Term 169619 - 169669 6.0 150 67 Op 2 16/0.000 - CDS 169684 - 170256 506 ## COG0311 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis 151 67 Op 3 2/0.000 - CDS 170286 - 171167 874 ## COG0214 Pyridoxine biosynthesis enzyme - Prom 171220 - 171279 4.6 152 67 Op 4 2/0.000 - CDS 171283 - 172575 1057 ## COG1686 D-alanyl-D-alanine carboxypeptidase - Prom 172606 - 172665 5.9 - Term 172628 - 172670 11.1 153 67 Op 5 . - CDS 172693 - 174150 1014 ## COG0516 IMP dehydrogenase/GMP reductase - Prom 174183 - 174242 5.7 Predicted protein(s) >gi|333602071|gb|AFDH01000143.1| GENE 1 7 - 345 226 112 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MANKQIVSPDNRLQLLKLTDMGDSYAVSLKLSGLDSSWDNMNYTTWDSWKDAHGNTVEVS NHTSSRTLGEDPESNASLESFTIPKKDYGGVLTTTLHEWPNPLREPYRIRIK >gi|333602071|gb|AFDH01000143.1| GENE 2 412 - 3051 2605 879 aa, chain - ## HITS:1 COG:all1741 KEGG:ns NR:ns ## COG: all1741 COG0826 # Protein_GI_number: 17229233 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Collagenase and related proteases # Organism: Nostoc sp. PCC 7120 # 3 869 12 859 865 753 44.0 0 MRSLRREDIELLAPAGDWDCLRAAVANGANAIFFGVEKFNARARAHNFKMDELSDIMSFL HLYGVKGFLTFNILVFEDELRDAKELIEACVDAGVDAVIVQDLGLVKMIRDISPDFPIHG STQMTITSPEAVEFTKPFDIERVVLGRENNLKQIKTIGDQAKLPMEVFVHGALCVSYSGQ CLTSEMWGGRSANRGECAQACRLPYDLIVDGEPKPMGDVAYLLSPKDLAAIELVPQLIEA GVTSFKIEGRLKSPEYVANVVSKYRRAIDAYFDGKDAKPSKEDIRELQQSFSRGFTSGFL EGTNNKKLVDGTFPKSRGVFLGRVKQVLRDAVICEIEAPLKRGDGIVFDAGDPTKKEEGG RVYDLRRKGVKMEGEAEGGLIEIVPGRNDVDLGRVRVGDRIWKTSDPALDKRLRQTYETE KPYRTFPVHLRVTGAVGQPLKTWWSDPSSNHSVFVESEALLEAALKRPLGEEVLAEQLGR LGGTIFELAGLDVQLSGDVIVPMRELNALRRRAVELLEAERQKPRRYMKREVDAYADEQL LQAPVSAEERRVSGRTDAAPAHTVDAAGKTADGTGAAGGQAAQPYGVRLTALCRGIEQVL AAVETDVDMIYADFEFIKQFPAAVEAAHAAGKKIALATPRIHMPGETGYFRNILKLRPDA VLIRNTGAMYFFMKYRAENPEEYQPELIGDFSLNIANHKTASLFVDAGCSMVTPSYDLNI QQMVDMLSRTDTSKMEMVIQQHMPMFHTEHCVYCTFMSEGTDFTNCGRPCEDHRASLQDR IGMSHPVRVDEGCRNTVYNAIEQSGAEYLNHFLELGVRSYRVEFLEESPEKVKEVLDLYR RAIRGNITGTQVWKTLKATNQLGVTRGQLVKWGRVDTME >gi|333602071|gb|AFDH01000143.1| GENE 3 3384 - 5456 2231 690 aa, chain - ## HITS:1 COG:BH0916_1 KEGG:ns NR:ns ## COG: BH0916_1 COG3325 # Protein_GI_number: 15613479 # Func_class: G Carbohydrate transport and metabolism # Function: Chitinase # Organism: Bacillus halodurans # 251 690 25 450 450 370 45.0 1e-102 MNGKAKRGLAFALVVLLLLVSLPLTALGASEWAPGTAYKKGEIVSYSGTLYECVQPHTAL QGWEPPNVPALWKKSTAVPDTQAPTAPTGLNAGTVTGNSAALSWTASTDNIGVSGYEVYN GTTLAGTSTTTSYTVTGLQPNTSYTFTVKAKDAAGNVSAASAAVTVKTAAPDTQAPTAPT NVKAGNVTANSVALSWTAATDNVGVTSYDVYNGTALAGSTSSTSYTVTGLQANTAYTFTV KAKDAAGNASPASAAVTATTTTQPTGSNEIIGYFPSWTSYNTPSFTPANVDATKVSAINY AFLDICWNGRHGNPSNDPENPNAQTWPCQDGNGAANNAPNGSIVLGDPYVDDVGEGGGYE SLKKLAQLKTKNPKLKLFFSVGGWTWSNQFSNTAADATARQNFATSAVSLLRQYNFDGID IDWEYPNAIGVPCASGQTCQRSADKANYILLLQTLRQQLDTAGQKDGKQYYITIASGANS TFVADAGGTSNWITQAANYLDWINIMTYDFHGPWDTSSNHVAPLYNDPSDPSGTPQFNVD SAVKIYLNKGVPASKITVGEPFYGYGWNGCNAGAKGDGLYQSCSGSSNTGSDGSTFNFSY LQNKGYLTKDASGKYTVGGLGFTRYWNDVTKTPYLYNPTSKIFITYEDEASIHAKNEYAK SKGLRGVMFWELEADSNKTLQTVVSNDLPH >gi|333602071|gb|AFDH01000143.1| GENE 4 6262 - 7647 1451 461 aa, chain + ## HITS:1 COG:SA1394 KEGG:ns NR:ns ## COG: SA1394 COG0423 # Protein_GI_number: 15927145 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glycyl-tRNA synthetase (class II) # Organism: Staphylococcus aureus N315 # 1 461 1 463 463 702 70.0 0 MSVNMDQIVALAKHRGFIFPGSEIYGGLANTWDYGPLGVELKNNVKRAWWKKFVQESPYN VGLDAAILMNPQAWVASGHVGNFNDPMIDCKQCKARHRADKIIENALDAKGIELVVDGLS FDQMKALMDEHEIACPDCGSRDFTDIRQFNLMFKTFQGVTESSSNVVYMRPETAQGIFVN FKNVQRTMRKKLPFGIGQIGKSFRNEITPGNFTFRTREFEQMELEFFCKPGEDMKWFEYW RAYCRDWLLNLGVKEASIRLRDHSDDELSHYSNATTDIEYRFPFGWGELWGIADRTDYDL KQHMEHSGEDFNYVDQEAGNEKYVPYCIEPSLGADRVTLAFLIDAFEEQKLEGDDSRTVL HLHPALAPFKAAIFPLSKKLSEGAQAIFSDLAKSFMVDYDDTGSIGKRYRRHDEIGTPFC ITYDFESEQDGQVTVRDRDTMEQTRMPISELKAFIESKIQF >gi|333602071|gb|AFDH01000143.1| GENE 5 7809 - 9953 2293 714 aa, chain - ## HITS:1 COG:CAC0805 KEGG:ns NR:ns ## COG: CAC0805 COG0840 # Protein_GI_number: 15894092 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Methyl-accepting chemotaxis protein # Organism: Clostridium acetobutylicum # 232 714 182 668 668 201 27.0 5e-51 MSNKWSEKIAGGWRSAVKKIQNLAPAKTAAGGPSGPGGGGNSIPALKAVGTKLFVIFFLS ILIAVLIVGTLSYQTSSSVVEEEVSKAAQQTVIQTGEKLDFLFRTYEKMSLDIMIDKTVG ASVDQLARPNISDSDVAIARMNLDSNLKKYSQTDENLAGIYIIPVTEKGVPTGYGQEKLI QENTALIKSVKDGDGKAIWFDSKINGYFTQLSFPTFGVARVMKNDYGQGNYMVLLEIKTD YLYNQLSGVHVGQTGRIEAMNAKQQLMVTEKSDMIGKEAQVKLEGQLQDQGRTKADVSGE PNLIVYTKSKQTGWLIYGFAPLDEITEKANGIFVLTVWVAIISALLAVVVGWLMSRMIGK PLVELGHLMNEGEKGNLAVRTLFTQRQDEIGQVGKSFNGMMSKITDLVNQTNRSADSVLE TARELTDASKKTALSAREIATATEDIAGGATSLAVAAENGNDLTSQISEQMKYVIEKNIR MSIATSEVQQMSERGIEQMDELTQKTLQSEQMTHSLVDRVDTLKQSTSSIRKILDVLTKI TAQTNILSLNASIEAARAGAAGKGFMVVAGEIRNLADQSRESIVNVAQITEEIQREMDAT VEALSAAYPLFREQTESVKEANQMFSSVKNEMDNLLIQLDEVSTSINDLNESQMTLADAM ANVSAVAEQSSATSEEVASLSSEQQSVSEGLVRLSGKLEDVSSQLSESLTKFKV >gi|333602071|gb|AFDH01000143.1| GENE 6 10132 - 13353 3064 1073 aa, chain + ## HITS:1 COG:no KEGG:SRU_1158 NR:ns ## KEGG: SRU_1158 # Name: not_defined # Def: FG-GAP repeat-containing protein # Organism: S.ruber # Pathway: not_defined # 429 681 374 603 619 88 32.0 2e-15 MARIIYKNRGMNLSKKRTAIAVFCLAALLLAVGAAAFLTGKKEQVRLLYATGGDRYDTAA FEQFRQSLAANLELERKPMDEVSARKLQSYDAVVPDPELANIPDNGYIQKLQDYVQNGGH LLLDNAFASKFPADFLGAYQTQLIAPPQAKPQFQYPAVPVNAQGMQEVIKLFSDNFFKRE TMDNLPGFYWGYGLDPSTAQPLVTLNGQALVAVNKVGEGTVLLSSTFLPNRYFITGYDLQ SGMDPTQGFGSLAAKYDQQRSLKPGTAFFDKKDLKLEPYFNFAFSAANAQFRTEFVTYVS KETFGYSVTKVLGPYGRPAMSYQNHFEAMPAFKDKEAIQWAELTKKYNQIPSFSLVRSAF YWGQWKESVSVHLNGGSNEKPQFSGESPASYYSSGMHLQSEEGAIRLAEYPDYKSLADPV EGPHRLVPAFADINGDGKEDLLAGSSDGYVYVYPNLGPKPEAYERDPAPGGLKLPDVYGK PEKLLLTSGQPLKTGPHASVHAVDWNADGKIDLLVSDATGAVQIALGQGGGRFAPLTALQ DPSGPIKVPGPAIAAAGDLRGQGFPDLVVGDADGKVRVYRAPQAGALRLSAGAVVADVGA KYAAPSVRDMDGDGRADLVVGSNEGDLRVFRQESGGTFTAQGSVNGATLNQMGTNALVGG HNSVPVWHDVNHDGVVDLIVGQLEFGSPVPVDSPAFPYKAELQEFLQYTKQNHLELYPHI YVHNFVSDAQEKQEIALHKQAFEKLGLPWTMPGTNQHTWRINFPDRLQTLRNENEQGIWF NFGFTPSHTPTEPRLGTDYIWGLPFLLTKDKSGSDQPMLIYTPAPVLRKTGESSTVDIYD SYIKRDMPIDYFEHIEYHFPARVGELEDFASFLDDIRNQYDYNFMTETQMARSFLTTLTT QVTVKRTWADYIMDEVKDRISGKGLHLSLTIGADTSAVPKQAAEYANTPGVVVEKGEKYA PYSLAAKSDVYTERSGKLYLGLAREAQLHIGKPAGEAHIVRANVPFELDTHESGTWKLNL QAAGLQQIKIYSPDGLTIPGNQADIKLEQDAATGMYTLTRYGDKTTISLSLKK >gi|333602071|gb|AFDH01000143.1| GENE 7 13477 - 13728 271 83 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MEEIIKQLEEHIRSRYEIEEDDDDFGVDVHLFDYGFIDSMGATALIAHIEQTYGIQVTNQ DLMLYPMNTVREIAQFISTKTGR >gi|333602071|gb|AFDH01000143.1| GENE 8 13733 - 14926 970 397 aa, chain + ## HITS:1 COG:MJ1077 KEGG:ns NR:ns ## COG: MJ1077 COG0172 # Protein_GI_number: 15669265 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Seryl-tRNA synthetase # Organism: Methanococcus jannaschii # 104 381 215 496 521 127 26.0 3e-29 MECKISLERLSESQHGQVKYASAFVDEHIQEISLEDGHLRIVHTSPNGDEAIRERVERLI ERFSKGDFGFKENILFRNEVSVPYSGDIIRELVESKSIKVLEPGLFIFREPFSSLMRFLD YSFVTKIANRFQVKEESYPAVIHSETLNKTNHFTSFPEHIHFLTHLREDLDVIESFSDSI RATGGWKDELPLDLNATMPKPKFTMNPSTCYHCYEGLQGETLEGDGIVVTAVAKCHRFES KNHTDFGRLLDFSMREIIFVGKPDFVKENRLKSIEYIKELAVEWEVDSLLEIANDPFFTN DFQVKASFQRNQEMKYELRLTIPYLDKSIACSSVNFHSNTFGNAFDIKVGKRAAVTGCVG FGIERWAFAFLAQYGMNEANWPASFREQYHAWQQKSL >gi|333602071|gb|AFDH01000143.1| GENE 9 14938 - 15843 859 301 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNILAFFKKNSFVLGLLLIFVVAEALVMWWNPLETSRRFGKDDFTKTLYHHGWSRSGAVF YGNSSVTGAYIEEKSAAKLVEMGLSYGKLTDLQQILQRGLYSVKDELVIGIDVHTLLDKM ETDYRFPWNKPWYKPYVYAYRADFLDAGKELVRNLAFQGSLAYEPRWIDKELYHGYATED AMTKGWARYEKDYNWMTLKDMQDNLDALQWVLDDAKEKGIPLRVVWMPFRQDHVKPPYTA AMKQEVNARLKAADVPVLDLMDRYAPKYFHDLVHLNREEGAPLFTKEVDEWLLSLRKPSK S >gi|333602071|gb|AFDH01000143.1| GENE 10 15807 - 15917 127 36 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MAAFFKKTFEILIYVGMLYLVLVYFTGQGLFIYEGF >gi|333602071|gb|AFDH01000143.1| GENE 11 15997 - 17148 1073 383 aa, chain + ## HITS:1 COG:PA3548 KEGG:ns NR:ns ## COG: PA3548 COG1696 # Protein_GI_number: 15598744 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted membrane protein involved in D-alanine export # Organism: Pseudomonas aeruginosa # 107 379 121 389 520 132 30.0 1e-30 MFYLNMNALLAMCGMVFVLMATRKWPQNKRILMLLFNLGFLFLWSGKLFAFYIAYTLLNY IFFVYLCRTPVWRKFAFALFILANIGAVILFHMLGKQGSVSLLADGVMTLGIMFNVLKII DALYFAYFFGKDGQAKVIDYVNYILFIPTFTSGPILKFRDFMADVKVPYKVDAPQFEAGV KRIVLGLFKKVVVVVWMTDLFNKVMDQELHTHQSLFLMIWFYLMIYMDFSGYSDIAVGFG RLMGFTIPENFKKPFLSPTLTQFWRNWHATLGDWFRDHIFIFFSRKTPSKLMTAGLSIFI MTLMGLWHGFSWLFLIYGVYHGVIIAIENLLGKTTVIRRKVSKPYFYMRCLLTQALVVAA IIINLNNPDVVLRVYKGLFHLPF >gi|333602071|gb|AFDH01000143.1| GENE 12 17303 - 18271 1003 322 aa, chain + ## HITS:1 COG:BH1249 KEGG:ns NR:ns ## COG: BH1249 COG1082 # Protein_GI_number: 15613812 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar phosphate isomerases/epimerases # Organism: Bacillus halodurans # 1 321 1 321 322 412 60.0 1e-115 MKLGVFAVLFGQKPLEEALDYIAEKGLEAVEIGTGGYPGNAHCKPEELLADESKLKAFKH AFDSRGLTISALSCHGNPLHPQKAVAKQFHDDFIRTLELAEKLEVPVVNGFSGCPGDHED AKYPNWPVAPWPNDFQEILDWQWTNKVIPYWTETGKFASDRGVKIALELHGGFSVHTPGT LLRLREAAGEVIGANLDPSHMWWQGIDPVQAVQILGRENAIHHFHAKDTSIDPINVNKHG ITDMQSYSLMLDRAWQFRTVGYGHDMKTWADIISALRLVGYDYVVSIEHEDGLMSVNEGF TKAVENLQQILIKEPLGDMWWV >gi|333602071|gb|AFDH01000143.1| GENE 13 18350 - 18550 205 66 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLFAEEAAQASSFSGFDPFVIIFTILIAIGLVRLFAAKRKNVFAIAFALVSLAVFLFMDF VMIKGW >gi|333602071|gb|AFDH01000143.1| GENE 14 18855 - 20471 1395 538 aa, chain + ## HITS:1 COG:alr0607 KEGG:ns NR:ns ## COG: alr0607 COG0155 # Protein_GI_number: 17228103 # Func_class: P Inorganic ion transport and metabolism # Function: Sulfite reductase, beta subunit (hemoprotein) # Organism: Nostoc sp. PCC 7120 # 12 501 10 519 536 367 40.0 1e-101 MAYQPIWAQDTSKLNKMELVKLQKDGLDVIRTIIEKYALEGYDSIPEDDMNLFKWAGVYQ QKPKDGHFMMRVRINSGVLTSAQARALAGIAEDYGRNLVDVTTRQAIQFHWLTVENLPDI FKRLEEVGLYSYEACGDCPRTIVGNPLAGIDPDELMDTTALVNEVNDFFLMNKDFSNLPR KYKMSISSNVYNSAHAEINCLGFTPAVKIIDGEEVLGFHAWVGGGLSAKPHLAKQLDLFV RPEEVLKVATGVTVIFRDFGYREKRHHARLKFLVADWGPEKFLEKLIELIGPMPTRGEEK VAGWTAAYFDGVHPQKQDGYSYVGLNVPVGRLNAEELRELARISDQYGQGTIRTTMSQNI ILSDIPNDRVDDVLQETVLQRLTPFPKRFMSRTVSCTGNEFCNLAIVETKERARRVAEYL DANVDLDEEVRIHFIGCPNACGQKQIADIGLQGTLVKTPDGPVDAFDIAVGGILGPGAQF NTGLKGRVKGDDVGPVLAELIRFYKENRSPEETFHQFFLRVGAPAFQAKLTEILTVAS >gi|333602071|gb|AFDH01000143.1| GENE 15 20742 - 23633 2218 963 aa, chain - ## HITS:1 COG:BH3594 KEGG:ns NR:ns ## COG: BH3594 COG0178 # Protein_GI_number: 15616156 # Func_class: L Replication, recombination and repair # Function: Excinuclease ATPase subunit # Organism: Bacillus halodurans # 1 948 1 946 957 1473 74.0 0 MATENIVIKGARAHNLKNIDVTIPRDKFVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLS AYARQFLGQMDKPDVDSIEGLSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLLFARIGKP HCPVHGIEITSQTVEQMVDRVMEYPERTKLQILAPLVSGRKGEHTKLLADIQKQGFVRVR VNGEIMDLSDKITLEKNKKHNIEVVVDRIVVKDDIQSRLADSLETALKLSEGRIIVDIID QEELLFSQNLACPECGFSIDELSPRMFSFNSPFGACPECDGLGSQMIVDPDLLVSDPNKT INQGAFEAWAGSTSTYYPQFLAAVCSHYQIPMDVPVSELSQEQFKIILYGTDGQRVRFRY QNEFGTVKDAYVPFEGIVRNLERRYRDTFSDGIREHIEAYMSSKPCPKCKGQRLKPETLA VTVGGTNIAHATELSIGDAQNWFEGLDGGLSEKERTIAHLILKEIKARLGFLVNVGLDYL TLHRAAGTLSGGEAQRIRLATQIGSSLMGVLYILDEPSIGLHQRDNTRLIQTLEHMRNLG NTLIVVEHDEDTMMASDYIIDIGPGAGIHGGQIIAQGTPEEIMNNDNSLTGQYLSGKKFI PIPAERRKPNGKWLEIKGAKENNLRNVSVKFPLGVFTCVTGVSGSGKSTLINEILYKTLA RDLNKAKVRPGLYREMKGLEHVDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDLFASTTE AKIRGYKKGRFSFNVKGGRCEACRGDGIIKIEMHFLPDVYVPCEICKGKRYNRETLEVNY KGKSISDILDMTIEDACEFFENIPRIHRKLYTLLDVGLGYMKLGQPGTTLSGGEAQRVKL AAELYRRSTGKTIYILDEPTTGLHIHDIDRLLKVLHRLVENGDSVLVIEHNLDVIKTADY LIDLGPEGGNRGGEIVAAGTPEAVVKVEGSYTGQYLKPILDRDRKRSDDYAERAKELLED AVS >gi|333602071|gb|AFDH01000143.1| GENE 16 24014 - 24091 69 25 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRHRQAGEQKGILPVCLLISGPIGA >gi|333602071|gb|AFDH01000143.1| GENE 17 24102 - 26099 1719 665 aa, chain - ## HITS:1 COG:BH3595 KEGG:ns NR:ns ## COG: BH3595 COG0556 # Protein_GI_number: 15616157 # Func_class: L Replication, recombination and repair # Function: Helicase subunit of the DNA excision repair complex # Organism: Bacillus halodurans # 8 665 2 660 660 986 76.0 0 MSEIIKSTNKFELVSDFSPQGDQPSAIQELVKSIQNGTRHQTLLGATGTGKTFTAAQVIA QLNRPTLIIAHNKTLAAQLCSEFQEFFPNNAVSYFVSYYDYYQPEAYIASSDTYIEKDSS INEEIDKLRHSATSSLFERRDVIIIASVSCIYGLGSPAEYGSLLLSLRTGMEKSRNEILH RLVDIQYQRNDMNFVRGTFRVRGDVIEIFPASRSEQAVRVELFGDEIERITEIDVLTGEI LGERDHIAIFPASHFVTKEDTMKRALVNIERELEERLEELRGKGKLLEAQRLEQRTRYDI EMMAEMGFCSGIENYSGPLTFRERGATPYTLLDYFPDDMLVMVDESHVTLPQIRAMYNGD RARKEVLVEHGFRLPSALDNRPLQFEEFERKVNQIVYISATPGPYELEHCPEMVQQIIRP TGLLDPIIEVRPTKGQIDDLIGEIQDRIAKDERVLVTTLTKKMSEDLTDYFKEIGIKVRY LHSDIKTLERMQILRDLRLGTFHVLVGINLLREGLDLPEVSLVAILDADKEGFLRAERSL IQTIGRAARNADGRVIMYGDKITDSMDKAIKETERRRTIQEAYNIEHGITPQTIAKKIRD VIEATKVAEEKTEYLAEVKTGKMSKKDRAAVIERLEAEMKDAAKSLQFERAAELRDALLE LKAEG >gi|333602071|gb|AFDH01000143.1| GENE 18 26390 - 27190 1019 266 aa, chain + ## HITS:1 COG:PA1460 KEGG:ns NR:ns ## COG: PA1460 COG1291 # Protein_GI_number: 15596657 # Func_class: N Cell motility # Function: Flagellar motor component # Organism: Pseudomonas aeruginosa # 1 245 1 245 246 208 47.0 8e-54 MDLATLLGLILGLGALIGGYMWDGGHLTSLLVPSAMLIVFGGTFGAVAVSFPVATLKKIP KALGIAFKQTQRDTTATIDEIVDMASIARREGVLALEQRAQEHPNPFLRDGLMMVVDGTD PELTRQILELEMDSIEHRNDGMSKMFEAAGGYSPTMGIIGTVLGLIHVLGNLSDPSTLGP AIAVAFSATLYGVMFANVVYLPIGNKIKLRGKEQISEMELMLEGILALQAGENPQLIRKK LASFVHEKNADKQSSGEAGAVLAEER >gi|333602071|gb|AFDH01000143.1| GENE 19 27174 - 28001 771 275 aa, chain + ## HITS:1 COG:CAC0305 KEGG:ns NR:ns ## COG: CAC0305 COG1360 # Protein_GI_number: 15893597 # Func_class: N Cell motility # Function: Flagellar motor protein # Organism: Clostridium acetobutylicum # 6 259 4 256 256 159 38.0 6e-39 MRKRGKKQEEHVNHERWLITYSDLITLLLVFFIVMYAMSKVDMNKYETMAKALNSQFMKN ESLLPQGSGISGTIIPTASDGTKPKKDTSAEEAAKKEQQLKDMLQAIQAYIKENNLEAKV SASDTPRGIAITLNDLFLFDLGKADLKPAAYPVLEKLATLLPTLSNRVSIEGHTDNIPIS SGSAYKDNWGLSFARSLSVLRYFTNTAKLSDDHLMATAYADTVPKMPNTSEENRAKNRRV EIVVLREFQNDEQQPQPQKEAPPAAVAEAAPAKAN >gi|333602071|gb|AFDH01000143.1| GENE 20 28250 - 29539 952 429 aa, chain - ## HITS:1 COG:lin2645 KEGG:ns NR:ns ## COG: lin2645 COG0265 # Protein_GI_number: 16801707 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain # Organism: Listeria innocua # 1 392 1 387 391 159 28.0 1e-38 MDIIAEIAGRFLTAFGRLWLNPFTYIGLLLVLLQYRKQIQFERKLFATRLHSLIGETWRT YLWGWVAGLGVSVVMLFVGVSLQADTILLLWGLSVAMILIRIRFLCLAYSVGLLGILQVV LAGLPAPGGGGFWSSVAAVVRNADVPSLLALVAVLHAAEALLIRSQGARMASPMFYEGKR GKIVGGYQLQGFWPVPLFLAVPVQAGTGAVDFPWSPLFTGDALMAGWSLLAFPAMIGFTE LTMTRLPKEKVGRSSAMLLVYAAVLFLSALLAQVWSPFTVVAAVLGIVLHEAVIWYGRWE EAQRSPCFINQPRGLKILAVVPGSPAAELGLRPGELVHKVNGVRVHSKTELHQAIQVSSA YCKLEIVDMEGEIRFHKRAVFAGEHHQLGIVICPDQDAVYYVEIRQLPLLTYFTRKLTGL LTKRSEEIL >gi|333602071|gb|AFDH01000143.1| GENE 21 29715 - 31169 1615 484 aa, chain - ## HITS:1 COG:BS_yvjB KEGG:ns NR:ns ## COG: BS_yvjB COG0793 # Protein_GI_number: 16080577 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic protease # Organism: Bacillus subtilis # 26 478 22 477 480 399 50.0 1e-111 MQFKGRTVIAFVLLGMFASSILTLTFTGRNLLPLGSKSVGASATAGSSGLSSQDVGKIAK TYQLIENKYLNKVDHDKIMNGAINGMLESLEDPYTVYMDSNEAKQFSESINSSFEGIGAE VTSEDGKIKVVSPIKGSPAEKAGIMANDVIVSVNGEKLDGLTVNQAVVKIRGQKGTQAKL EILRQGSTEPVQVVVVRDEIDIETVFGEMLEGGIGKIEIRQFSANTTEHFQQELKKLETQ GMKGLVIDVRNDPGGLLNVVIDIVEPFVPKGKPIVQIENREGKREATTSKDGSKKYPVVV LTNKGSASASEILAGAFKEAVGSKTVGETTFGKGTVQETYVKEMGDGSNIKMTVYKWLTP DGNWIHKKGIEPDIAVEQPAFFKASILSKKDTLKPDSNSDDVKNLQLMLTGVGYEPGRTD GYYSSKTADAVKAFQKSSGLPVTGNVDAATAKKLESAVLEAVKLPKNDNQLKAAVKELQT QLSK >gi|333602071|gb|AFDH01000143.1| GENE 22 31265 - 32521 1074 418 aa, chain - ## HITS:1 COG:TM0409 KEGG:ns NR:ns ## COG: TM0409 COG0739 # Protein_GI_number: 15643175 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane proteins related to metalloendopeptidases # Organism: Thermotoga maritima # 299 416 140 254 271 113 48.0 6e-25 MKKRLMPLVVALGISTTLLPYAVANGASNSAKIDQEISNMKKMKSAAEQKAKDVQNQLTQ VQQEKQETAKDIETLMDQLDSATAKLSGLNVQIENTTEDLEDNAKQLDEAEKRVETRDEL LKKRMRIMYENGSVSYLEVVLNSTSFSDFIDRMSALKSIVGQDKEILEANKKDRALVAEK KQQIEKQLAYVKNLYAQTEDLKQDLLVKEKAKEVKIASLSAEQQHLEEISSDQEQAIMEY AKKESQLQAKKAADAKAAAAAAAAAAKNSSSSGSSGIGGGPATGSGGSMGYPLPKRVSLS SGYGGRVDPINGSFAGHTGIDMPSPQGTDIYAAESGTVLVASEWSGYGNCVIIDHGGGVW TLYGHIRNGGIKVSKGQSVKRGEKIAEVGSTGRSTGNHLHFEVRINSKPVNPSSYIGY >gi|333602071|gb|AFDH01000143.1| GENE 23 32566 - 33468 816 300 aa, chain - ## HITS:1 COG:BS_ftsX KEGG:ns NR:ns ## COG: BS_ftsX COG2177 # Protein_GI_number: 16080578 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division protein # Organism: Bacillus subtilis # 1 300 5 296 296 252 44.0 7e-67 MARHLREGFRNIIRNGWMTFASISSITISLFILGLFLLLSLNVNYVADQIEKQVEIRVYM DLNITEDQTNQLKQELNALPEVQKVTFVSKEQGLEDLRNRLGEEGKGFLEGFEGDENPLP PAFKVEVKDPRQVAGVADKINGLNEGKEPKPIGSVKYGQGTVENMFKITQIVRNVGLVLV ALLAFTSVFLIANTIKLTIVARRREISIMKLVGATNAFIRWPFFIEGALLGIGGSAIPVA VLLYGYNKLVESSKSDLSMVFIKLKPFAEISYVIAGLLLCLGFLIGIWGSIISVRKFLKV >gi|333602071|gb|AFDH01000143.1| GENE 24 33473 - 34159 350 228 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 213 4 217 223 139 33 8e-32 MIEMQDVWKTYPNGTHALRGIDVKVDRNEFVYIVGPSGAGKSTFMKMIYREEKPTKGQIF VNGFNIEKLKQRKIPYVRRNIGVIFQDYRLLPKMTVYENISFAMEVIEAPKKLIKKRTME VLDLVHLKDKANSLPGQLSGGEQQRIAIARAIVNNPAVIVADEPTGNLDPETSWGIMKLL EEINFRGTTIMMATHNKEIVNTMRKRVIAIENGIIARDELRGEYGYEE >gi|333602071|gb|AFDH01000143.1| GENE 25 34418 - 35860 671 480 aa, chain + ## HITS:1 COG:BH1596 KEGG:ns NR:ns ## COG: BH1596 COG2720 # Protein_GI_number: 15614159 # Func_class: V Defense mechanisms # Function: Uncharacterized vancomycin resistance protein # Organism: Bacillus halodurans # 152 370 95 301 305 120 34.0 4e-27 MKPVKRVLTTIATVLPLAAVIALGSIAFYGSRPAFPEQFTVSGWKVGGMAYADFPGQLSR QVALLNSVPVQLVSDRKEVPSRSQKLQDLGLRIDDRELQTLLHDLTEGNLLDRARNRWKL RHYQANIGLFIEADQLEKKLRILWPDIYAVQPVSAQRIVTPDDRVQYKAGQPALRIDASR LKADIERQIRQIDPRRAENPLSIQVPFRLQEPEVTEKMLRDQHVDRLITQFSTPLNQSSP GRKHNVRSTAATLHEVILKPGEIFDYAPIIEQTGVKFGFREAPVILNGKLVPGVGGGICQ VSTTLYNAVLRAGLEIVERRNHSLPISYAPLGQDATFSTGFINFRFRNDTKAHLLIRTEM SDTALTIKLFGSIPSDTTYEIMSNTVETIQPPVKYVHNSGLRAGEQVELSPGKQGFVVDT YRIKKQGGKEVSREKISRDRYTPQARVVASNTGVLKPPADSAPPQKNVIEDGVTQNGKTP >gi|333602071|gb|AFDH01000143.1| GENE 26 35988 - 37403 1401 471 aa, chain - ## HITS:1 COG:BH3186 KEGG:ns NR:ns ## COG: BH3186 COG0165 # Protein_GI_number: 15615748 # Func_class: E Amino acid transport and metabolism # Function: Argininosuccinate lyase # Organism: Bacillus halodurans # 1 456 1 456 458 637 67.0 0 MSKLWGGRFTKQTDQLVEEYTASITFDKELAEEDIQGSLAHVTMLGKCGILPQEDVETIK DGLNRVLGMIRRGELEYTIANEDIHMNIEKTLIDEIGPVGGKLHTGRSRNDQVATDMHLY LRGRVVEFVSLLQKLQEALLTQAKANLDTIVPGYTHLQRAQPILFAHHLMAYVSMFQRDI ERLQDSYKRINVLPLGAGALAGTTFPIDRHFVAEQLGFEGVYENSLDAVSDRDFILEFLA NASFIMMHLSRFCEELVMWSSTEFNFVELDDAFCTGSSIMPQKKNPDVAELVRGKTGRVY GNLFGLMTVLKALPLAYNKDMQEDKEGMLDTVRTLQGALQLFAPMISTMKVNKARMRQAV NQDFSNATDIADYLVNKGLPFRQAHEVIGKTVLYCIQEGKFLLDLSMEEFNKFSELFGDD IYEVLQPEQVVNARNVYGGTASSQVEGAISRAEKNLEVTVNWVDSKLDKSK >gi|333602071|gb|AFDH01000143.1| GENE 27 37503 - 38741 1422 412 aa, chain - ## HITS:1 COG:PA3525 KEGG:ns NR:ns ## COG: PA3525 COG0137 # Protein_GI_number: 15598721 # Func_class: E Amino acid transport and metabolism # Function: Argininosuccinate synthase # Organism: Pseudomonas aeruginosa # 4 404 5 398 405 481 57.0 1e-135 MAKEKIVLAYSGGLDTSVILAWLKETYDAEIIAFTADIGQKDELDGLEEKALATGASKVY IDDLREEFASDFIYPMFQSGALYEGQYLLGTSIARPLIAKRMVEIARAEGATAIAHGATG KGNDQVRFELTAAALAPEIGVIAPWRLEAFREQFPGRAEMIAYAEKHGIQVQATASKPYS TDRNLLHISFESGMLEDPWFDASADSNRDMYVLSVSPEDAPDQPEYIELEFEQGNAVAIN GEKLNPLQMMETLNELGGKHGIGRIDMVENRFVGMKSRGVYETPGGTILFAAHRRIESLT MDREVMHLRDSLISKYSTLVYNGFWFAPERLAIQALVTESQKNVSGTVRMKLYKGNVIAA GVKSPVSLYNPNIATMEADPTQAYDQGDAAGFIRLNALRLKVSSGVEQQSGK >gi|333602071|gb|AFDH01000143.1| GENE 28 38774 - 39730 1018 318 aa, chain - ## HITS:1 COG:PH0726 KEGG:ns NR:ns ## COG: PH0726 COG0078 # Protein_GI_number: 14590603 # Func_class: E Amino acid transport and metabolism # Function: Ornithine carbamoyltransferase # Organism: Pyrococcus horikoshii # 9 318 1 310 317 401 60.0 1e-112 MSSTVQEEMQQQLKGRDFLGLVDYTPAELNHLITLARDLKAKQKAGEAHQLLKGKTLGMI FEKSSTRTRVSFEVGMFQLGGQALFLSKNDIQLGRGETVSDTAQTLSRYLDGIMIRTFAH RNVVDLARAATIPVINGLTDFSHPCQALTDYMTIQEHKGRLEGLKIAYVGDGNNMVHSLL VGAAKLGLNITVAAPEGYTPDEELVRSSREFASQSGGSVLVTQDPKEAVADADVIYTDVW ASMGFEAEQQERERAFSGYQVNEELARYAKKDYLFLHCLPAHRGEEVSEGVIDGPNSFVF DQAENRLHAQKAVMASIM >gi|333602071|gb|AFDH01000143.1| GENE 29 39796 - 40986 1185 396 aa, chain - ## HITS:1 COG:BH2897 KEGG:ns NR:ns ## COG: BH2897 COG4992 # Protein_GI_number: 15615460 # Func_class: E Amino acid transport and metabolism # Function: Ornithine/acetylornithine aminotransferase # Organism: Bacillus halodurans # 6 387 2 377 384 394 51.0 1e-109 MVQQASSLFPTYARFPITLVKGEGSRLWDDQGKEYIDLMAGLAVTNLGHAPEVVKEKLVA QLDQLWHVSNLFHIPNQEKLAKLLTDNSCADAVFFCSTGAEANEAAIKLARRYSQKVLGE NRYEIITFHQSFHGRTLATLTATGQEKVQEGFHPLPEGFVYADYNDLASVEKLISERTCA VMLEMVQAEGGVIPADPAFVKALAELCKERGLLLIVDEIQTGMGRTGKLFAYEHYGIEPD IFTLAKGLGSGFPIGAMLGNAKVAPAFSAGSHGSTFGGTPIATAAAIATVEYMLSEKIPQ RAAELGEWTVKTLREKLAGNPIVEEVRGEGLLIGIVCKQPAAELIAEIHEAGVLVVSAGP QVVRLLPSLVIPKEDLQKGLDVVCDVLARKASALVQ >gi|333602071|gb|AFDH01000143.1| GENE 30 41028 - 41813 783 261 aa, chain - ## HITS:1 COG:BH2898 KEGG:ns NR:ns ## COG: BH2898 COG0548 # Protein_GI_number: 15615461 # Func_class: E Amino acid transport and metabolism # Function: Acetylglutamate kinase # Organism: Bacillus halodurans # 5 241 6 236 260 203 48.0 3e-52 MESFVMKCGGSTLAALPDSFFTDLKQLQDRGIVPVIVHGGGPAISETLNQLSIASEFVGG LRKTSEAVLDVVEMVLAGRINKEIVRRIQLSGGKALGLSGVDGRLITARPVENTSEVGLV GDVTDVNAELIQGVVGMGYMPVIAPIGLGGDGNQRYNINADTAAGAVASRIGTDRLIVVT DVPGIMKVEDGVKRVLPTVTIADIEAMIESGDIYGGMIPKVRAAIQCIQGDVREVVIVDG SVPGILSSVLDGAQAGTRIIR >gi|333602071|gb|AFDH01000143.1| GENE 31 41859 - 43085 1383 408 aa, chain - ## HITS:1 COG:BH2899 KEGG:ns NR:ns ## COG: BH2899 COG1364 # Protein_GI_number: 15615462 # Func_class: E Amino acid transport and metabolism # Function: N-acetylglutamate synthase (N-acetylornithine aminotransferase) # Organism: Bacillus halodurans # 13 408 16 411 411 434 60.0 1e-121 MTLLGRFTVVPDGTVTTPQGFRAGGLHCGLKKTERNDLGAIVCDVPAAVAAVYTLNAFQA APLRVTQESIAAGGRLQAMLVNSGNANACTGEQGLADARAMRDALARRLGIAEELVGVTS TGVIGELLPMTKVLAGIDALPEKVHAAGGEDFSQAILTTDLVKKVICVRVNIGGREVHIA GAAKGSGMIHPNMATMLGFVTTDANIEGKHLQQLLGEATDSTFNMITVDGDTSTNDMVVV MASGLAGGEALQPGQADWEDFAAAFRYVSEHLAKAIARDGEGATKLIEVNVHGAASQEAA RAIAKTVVGSSLVKTACFGADANWGRIIAAVGRAGQPVNTETVDVSLGGIAVLKQSKPVA FDEDRAEAYLKGDIVQIDVHLNMSESGATAWGCDLTYDYVRINAAYRT >gi|333602071|gb|AFDH01000143.1| GENE 32 43172 - 44221 934 349 aa, chain - ## HITS:1 COG:BS_argC KEGG:ns NR:ns ## COG: BS_argC COG0002 # Protein_GI_number: 16078184 # Func_class: E Amino acid transport and metabolism # Function: Acetylglutamate semialdehyde dehydrogenase # Organism: Bacillus subtilis # 5 349 1 346 346 374 51.0 1e-103 MTEHVRAAIVGSTGYGGVELIRLLLGHPAVTITSVISSSSAGTPISDGFPHLNSIIHDSL DAVDVSLIASKADVVFLATPAGVAAKLAPQMLEAGLKVIDLSGDFRLKTPEIYTQWYKRE GASQEDLDKAVFGLCEIYGEQVPGKEFISNPGCYPTATLLGLVPAVKAGWIDPSTIIVDA KSGISGAGRGLGLGVHYAEANENLSAYKLNRHQHIPEIEQVLSDAAGREVIITFSTHLVP MTRGIMATCYAQLNGKHDTREFIEMYRNFYEGRRFVRIREEGKWPATKEVWGSNYCDIGF AVDERTNRVTVVSVIDNVMKGAAGQAVQNLNLMLGWDETTGLQLTPVYP >gi|333602071|gb|AFDH01000143.1| GENE 33 44471 - 45355 932 294 aa, chain - ## HITS:1 COG:lin2652 KEGG:ns NR:ns ## COG: lin2652 COG1284 # Protein_GI_number: 16801713 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 7 290 4 285 287 271 52.0 9e-73 MAMAKGKRRKARLVLNSPQQKVYEYAMLLIGCLIISISFNVFLNPNQVASGGVSGLSTII QQTLGWQPALTQWGLNIPLFLLGLWLLDRSYSLKAVVGSIVLPLCVMLTSHLPTLTHNIL LATIYGGMVLGLGIGIVFRGRGSTGGFSISSQILHKYSGLSLGVSVAVFDGMVILLAGLF FGPEKALYALIGLFVTTKTIDIVQVGLNTSKVAYIISNDPEKLREAILHDLDRGLTQLTG AGGYTGDARLVLMVVVSQSEVSKLKALVQSIDPQAFIILSNANEVLGEGFKRAV >gi|333602071|gb|AFDH01000143.1| GENE 34 45939 - 46940 913 333 aa, chain - ## HITS:1 COG:BS_prfB KEGG:ns NR:ns ## COG: BS_prfB COG1186 # Protein_GI_number: 16080582 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor B # Organism: Bacillus subtilis # 2 328 39 365 366 472 70.0 1e-133 MKMAAPDFWDDNEKAQKIIGELNAIKSVVDQFQALNNEYEDLDVMAQLADEENDEDMAAE LADGLKGVLRKLEDFQLQLLLNQPYDRLNAILELHPGAGGTESQDWAEMLLRMYRRWAEK RDFKVEVLDYLPGDEAGVKSVTLLIKGYNAYGYLKAEKGVHRLVRISPFDASGRRHTSFV SCDVVPEIEDDVEVDIRTEDLKIDTYRASGAGGQHINTTDSAVRITHLPTGVVVTCQTER SQIKNRERAMKHLRSKLYEKKIEEQEKHLAEIRGEQSDIAWGSQIRSYVFHPYSMVKDHR TTEETGNVGAVMDGDLDPFIDAYLRLQIQKKEE >gi|333602071|gb|AFDH01000143.1| GENE 35 47250 - 49754 2604 834 aa, chain - ## HITS:1 COG:BH3606 KEGG:ns NR:ns ## COG: BH3606 COG0653 # Protein_GI_number: 15616168 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecA (ATPase, RNA helicase) # Organism: Bacillus halodurans # 1 833 1 837 838 1104 67.0 0 MLGLVKKMFGDSNEREIKRYWKAVDAINGLEPEISALSDEQLKGKTVEFRERLEKGEDLD DLLPEAFAVVREASKRVLGKRHYDVQLIGGMVLHEGKIAEMRTGEGKTLVGTLPVYLNAL AGKGVHVVTVNDYLAQRDSGEMGQIYDFLGMTVGVNLHDLSHEQKQGAYACDVTYGTNNE YGFDYLRDNMVLYKEQMVQRPLYFAVIDEVDSILVDEARTPLIISGQAAKSTDLYYAADR FVSKLEAEKDYTVDIKVRSVSLTEQGVEKAEKAFGIENLFDHQNVTLNHHVTQALKARVI MRRDVDYVVQDDEVLIVDEFTGRLMTGRRYSEGLHQAIEAKEQLQVQNESMTLATITFQN YFRMYRKLAGMTGTAKTEEEEFKKIYGLDVIIVPTNRPMIRKDMPDVVYKTEMGKFKAVV EEIVERYKNKQPVLVGTVSIENSELLSEMLKKKGVQHKVLNAKYHAEEAEIVSRAGQAGA VTIATNMAGRGTDIMLGDQVHEIGGLHIIGTERHESRRIDNQLRGRAGRQGDPGSSQFYL SLGDELMKRFGAENIMAMMDRLGMEEDQPIESKLITRAIESAQKRVEGNNFDMRKVVLQY DDVMNQQREIIYKQRREVLESENIREIVETMLRSSIERIVNAHCSESQIPEEWDLQAVVD YVNNNFLSEDALNSKDIWGKEIDEIIEFIDEKVKEKYNEREEQIGAEFMREFEKVVVLRA VDSKWMDHIDAMDQLRQGIHLRAYGGTDPLREYQFEGFEMFHEMVDSIQEEVATYIMKAH VESNLERQAVAEGQAVDPKVESAGKQPIVKEEQIGRNDPCPCGSGKKYKQCHGA >gi|333602071|gb|AFDH01000143.1| GENE 36 50248 - 50796 536 182 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|30023223|ref|NP_834854.1| sigma (54) modulation protein / SSU ribosomal protein S30P [Bacillus cereus ATCC 14579] # 1 179 1 178 180 211 61 2e-53 MKFTVRGDHLEITAALREYVEKKLSRLEKYFEAPLNSEGFVTLSVVKNIHTVEVTIPLQG VLLRAENKDQDMYAAIDLVVDKLERQVRKHKTKMNRKIRLEGNKRELSKLESQVLTMDEE EEDYELVRTKRFTLKPMDIDEAILQMNMVGHDFFVFSNMDTEQVNVVYKRDDGRYGLIEP AI >gi|333602071|gb|AFDH01000143.1| GENE 37 50994 - 51191 215 65 aa, chain - ## HITS:1 COG:BH3610 KEGG:ns NR:ns ## COG: BH3610 COG1278 # Protein_GI_number: 15616172 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Bacillus halodurans # 1 65 1 65 65 108 90.0 2e-24 MQGKVKWFNAEKGYGFIEREDGGDVFVHFSAIQTDGFKTLEEGQAVEFDIVEGARGPQAA NVNKL >gi|333602071|gb|AFDH01000143.1| GENE 38 51436 - 52194 451 252 aa, chain - ## HITS:1 COG:alr5229 KEGG:ns NR:ns ## COG: alr5229 COG0500 # Protein_GI_number: 17232721 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Nostoc sp. PCC 7120 # 18 211 70 267 286 80 31.0 2e-15 MMVKLAYNAVITIPSNDLSLMPTLVTTGMFEVPLTKYFLTQLKPGYTVVDVGANIGYFTV LAAKVVGNTGKVIGYEADPNTAAVLKDNLAMNWLTENVTVINKAVYSDNKTLQFRSSERF HGYSSWKEKPKDDNLIDHYTIRDVEAVSLDNELQELDTIDLVKIDIEGGEYHAFLGMKKL IQDRKIKKITFEWNKAMLGADEGPFLDLINDLITNRGARLTLLDKEGEVVETTLKDLAAF EFYPFVLLEFQN >gi|333602071|gb|AFDH01000143.1| GENE 39 52260 - 52682 112 140 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKQMKCYTKVKGGDVQHLPYYQAYIYFLEEQYEAALNQFIQFYQETDSISTQSVYVKWIV LCLIELQRDPQALDILNDMFKRSIDNSDLLYMYYLLNVMSGKSKEDLTQILTAISLLDDA VAYPEFFTNIEHLIFERNNI >gi|333602071|gb|AFDH01000143.1| GENE 40 54044 - 54697 277 217 aa, chain - ## HITS:1 COG:no KEGG:Ccel_0103 NR:ns ## KEGG: Ccel_0103 # Name: not_defined # Def: hypothetical protein # Organism: C.cellulolyticum # Pathway: not_defined # 1 217 202 414 414 160 36.0 5e-38 MLLGLFINALQKDIDENKGHTIPNVINSYKEKLLDTDYLGSIEKIQVNLELQLQVLFELI KSRIEMGISSERYQLTFNEMMEGLKINQEKYTLNSFKFNYEENFKNFYSPYMNTKEYIME NYIVNYLFNILFPVLSEENDSLFLGYAIISTIYAMLKVHLVGVSGKYQGLNDDVVLRTIQ SFAKIIEHNATYITSIIEELKRNNYYSLAHISLMVKD >gi|333602071|gb|AFDH01000143.1| GENE 41 55147 - 55278 99 43 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKQLALMPEYMKNLNVLVGNVKILVAQVGQYHWIRKHLRAIKK >gi|333602071|gb|AFDH01000143.1| GENE 42 55732 - 56190 -34 152 aa, chain - ## HITS:1 COG:lin0696 KEGG:ns NR:ns ## COG: lin0696 COG0463 # Protein_GI_number: 16799771 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Listeria innocua # 3 150 72 219 637 67 31.0 8e-12 MIKIATQPIILMIDADERVLPNQEESFRDTCNLLFDDHDKIGRVTILNEQENKETLKSSI SRIFKNSSSFSYAGAIHEQIQSESSNTTYFQSGITLEHKGYLNSSLIAKDKYERNLSLLF NELKNARNGSYINFQIGRTYYVMGENKKLLII >gi|333602071|gb|AFDH01000143.1| GENE 43 56462 - 60145 553 1227 aa, chain - ## HITS:1 COG:MA0247 KEGG:ns NR:ns ## COG: MA0247 COG2304 # Protein_GI_number: 20089145 # Func_class: R General function prediction only # Function: Uncharacterized protein containing a von Willebrand factor type A (vWA) domain # Organism: Methanosarcina acetivorans str.C2A # 1 230 11 225 589 72 31.0 7e-12 MVRTINLFLSLLLVFAILPAYSAMASADEIVRVTKTLNPTQILEGGESTVTLNIQGSDSV NVVKPNDIILIIDRSGSMDPKNNNGEDKMTNAKNSATGFIDLLDFTKHRVGVVDFASDVK FKDLSSNPADVKSYISGIKASGGTNTKLAIEKARELLRGHRTEAQPVILLLTDGEATEPA PVDNARKLALEQANGAKSEGIVFYTIALLKQNENPNTSAPNLLMKDMATTAQHHHFVLGS VGLAEIYRAIVEEIGMASAYDVTVKDSVAPEFEIVPGSYKDNIPQPTVVGNTLTWTFNEL KKETLTFNYKIRHKTGERVGHLSVGSADIDVTFKDYLGTPHQTKVPNPSIDVMYPAPQIT SLVEDKGLVQGGETVTIHGANFRANPKVTFGNTAVSSVQFIDSTKLIVIAPPGPQGIAEV KVTNTDGQFANYSYNYYANPEIISIVPKQGKLSGGNEVVITGKYFMNGATVKFGEHDATV KAATYEQIKVTAPAGTAAGFVDVTIINPDGTSVTSTNAYEYLEAPVVLGIQPAVGLTTGG DTVTITGEHFKSGAIVKFNQSVVPTEFVSATELRITTPSWAKAESVDVVVINTDKQEAVL GKGYTYNYPAPVITSVTPNAGPAAGGDFVNITGENFFADSKVLFKDKVVSYTFIDKQHLR VRAPQWTQEEKVDITVKNPDGQSATAKEAYSYTLPEVFELLSVVPNSGLLAGGNTISIQG KNFDNNLSVYLDGAKVTFTLISSEKINIIAPKRLVTGKVDVKIVDMYKREATLKEAYEYL APPPPPAPVVTSVDPAEVVRTSGEFMLINGDNFQDGAVLWLNDRKITSISFVNSKQLRLR APSWDKEEFVDVKVVNPDNQSGTLAAGLHFINPPADPAPVISSLSPDTGEMPGGYFVTIN GQSFKNGAKVFFGNKEVSVSFLGATQLRVRAPQWEVEATINLKVMNPDGQEVSSPFTYIR PALGPAPEITSVTPEQVLITGGTFVTINGEHFAAQSVVKVGNQQVVTTFVSDKQLRIRVP VWPRAERVDITVTNVDGQIATRTGGLEYILPPPPVISSLTPNHMVIDANEFVVIDGANFQ TGSKVFFGDKEVLATFISDKQLRMRAPVWSKAETVSIKVVNPDGQATLLQAGFTFDPKPM KPAPTITTISPNSGPKSGGDFTYINGSNFVSGAKVSFNNGAPFDVTFLSANQIRFRAPSS AKLGPVDVKVINPDGQTVTLTGGYTYQ >gi|333602071|gb|AFDH01000143.1| GENE 44 60153 - 60326 122 57 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MHDEITQALELEKKTLEKQIVAIEKRKTLQMFILNKHLTSMMLFLWILKTKSEGVAL >gi|333602071|gb|AFDH01000143.1| GENE 45 60496 - 60888 282 130 aa, chain - ## HITS:1 COG:BH3613 KEGG:ns NR:ns ## COG: BH3613 COG1516 # Protein_GI_number: 15616175 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport; O Posttranslational modification, protein turnover, chaperones # Function: Flagellin-specific chaperone FliS # Organism: Bacillus halodurans # 7 118 8 119 133 65 36.0 3e-11 MQNAKQQQYLKVRVETASPGELTLLLYQEMVKLLLQAKQLYSQSQYEDMNQSLYKVKTIL GELIVTLDMKYDISKNLSNLYMFYNQYIAEFIIKKDENMLNEVLDFARGMVDTWKQALLS LKTSGSQINA >gi|333602071|gb|AFDH01000143.1| GENE 46 60930 - 61631 218 233 aa, chain - ## HITS:1 COG:BS_fliD KEGG:ns NR:ns ## COG: BS_fliD COG1345 # Protein_GI_number: 16080587 # Func_class: N Cell motility # Function: Flagellar capping protein # Organism: Bacillus subtilis # 3 232 284 496 498 114 34.0 1e-25 MKQYNELVDKFSEATTAKKNRAYQPLTSEEKEAMTDSQITLWEKKAREGDLYNDGLLKDT LASMRSALNIPLEGITDPPDPKSQLRLLSQIGINVINDFRENGKLEIDEKKLQEAINTRF DEVKVLFTKSSDTPNDTPENMKKRKSELGFADRLYETIGAQLTKFTKKIGSGSIEALDES VLGKQLKDFSKRETDLERKLLDIENRYYKKFGAMEKALQKLNSQGSWISSQLR >gi|333602071|gb|AFDH01000143.1| GENE 47 61775 - 61852 63 25 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLNLALVHSVVYLFRIHLQMYHWHL >gi|333602071|gb|AFDH01000143.1| GENE 48 62677 - 62775 56 32 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MGFVVESASIKPETVEAEITFNNGAREPGIEL >gi|333602071|gb|AFDH01000143.1| GENE 49 62852 - 63673 333 273 aa, chain - ## HITS:1 COG:BH3616 KEGG:ns NR:ns ## COG: BH3616 COG1344 # Protein_GI_number: 15616178 # Func_class: N Cell motility # Function: Flagellin and related hook-associated proteins # Organism: Bacillus halodurans # 1 273 1 272 272 234 58.0 2e-61 MRINHNISSYNAQRQLSTNNSAQSKSLEKLSSGFRINRAADDAAGLAISEKMRNQIRGLE QASKNALDGISLIQTAEGALNETHAMLQRMGELFTQAANEVLTTADTAKIKTEVDALSDQ ITSIADQTQFNTKKLLNGSTTTLNFQVGANEGETISLTLEKMDAGTLKVGKGDFAALDTN ANAGKNVTAVQDAINKVSETRSNLGAVQNRLEHTINNLGTTAENLQAAESRIRDVDMAKE MSEFTKNGILQQAATAMLAQANQQPQGVLQLLR >gi|333602071|gb|AFDH01000143.1| GENE 50 63839 - 64066 268 75 aa, chain - ## HITS:1 COG:YPO3304 KEGG:ns NR:ns ## COG: YPO3304 COG1551 # Protein_GI_number: 16123457 # Func_class: T Signal transduction mechanisms # Function: Carbon storage regulator (could also regulate swarming and quorum sensing) # Organism: Yersinia pestis # 1 54 1 54 61 65 59.0 2e-11 MLILSRLKGEKIIIGQDIVLTVLDVAGDQVRIGIEAPKDIPIHREEIYKAIQAENQAAVK MDLNAASLLKAVKGK >gi|333602071|gb|AFDH01000143.1| GENE 51 64068 - 64499 292 143 aa, chain - ## HITS:1 COG:BS_yviF KEGG:ns NR:ns ## COG: BS_yviF COG1699 # Protein_GI_number: 16080591 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 138 1 138 143 94 35.0 8e-20 MIVQSTRFGEIDVSDEQLITFEAGIFGFETNRRYALLQLDNGDPTFHVLQSLSDADLAFV IAEPFLFEPAYEFELPKAVSEQLEIKNEGDTQVFGIVSVRAKDNVTMNLKAPIILNKKRN KAAQVILESTNYPIRYSLIKGGA >gi|333602071|gb|AFDH01000143.1| GENE 52 64563 - 65135 363 190 aa, chain - ## HITS:1 COG:no KEGG:BBR47_53380 NR:ns ## KEGG: BBR47_53380 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 1 190 1 192 192 98 33.0 1e-19 MQIPRIQISQQYAKIGLSTTEGKLSIEQPKAELNLQQDNTKVSMETEKSNLEIDSTRAWS ALGSSKLIEMRDFIAQSAFDISMQNIAEIAQNGDRMMEITNHSNAFADIARQNAFKDRPV QVTAEPSYDNVDIQYAPSVIHTTVQDGKITFDPKLNSPRIQYEAAKLEAYVTQKNAISFS IVGGKWDASI >gi|333602071|gb|AFDH01000143.1| GENE 53 65148 - 66059 303 303 aa, chain - ## HITS:1 COG:BS_flgL KEGG:ns NR:ns ## COG: BS_flgL COG1344 # Protein_GI_number: 16080593 # Func_class: N Cell motility # Function: Flagellin and related hook-associated proteins # Organism: Bacillus subtilis # 1 303 1 298 298 161 32.0 1e-39 MRITQNMMSSSMMKNLQTNYNRLDKYQEQLLTQQKINRPSDDPVGISSSLRYRGEIGMTD QFSENAKDADSWMNFSDTVMNEAVKILQTVSEKAVQGATESNNPEARKILGQEIDELYKQ MVAIGNSQFKGKYIFNGQTTDQKPFSDDPANTSYSLDEGIMRYQIGAGIYVDVNSLGKDV FGPFQDPADPTKAANVFKVLDNLKAALNGDNTAGIEKSIKEIQTTMDQVLFAQADVGARQ NRLQFTTDRLEDLTLNYTDLQSKIEDVNVPKTITDLKTAESIFQASLDTMGRIIRPSLLD FLR >gi|333602071|gb|AFDH01000143.1| GENE 54 66073 - 67638 1277 521 aa, chain - ## HITS:1 COG:BH3621 KEGG:ns NR:ns ## COG: BH3621 COG1256 # Protein_GI_number: 15616183 # Func_class: N Cell motility # Function: Flagellar hook-associated protein # Organism: Bacillus halodurans # 3 521 4 556 556 261 34.0 2e-69 MRSTFHGLELGKRGVIAQQVALNTTGHNITNANTPGYSRQVAQMVAARPLEYPSVTNSTS PGQLGMGVEVNAIQRIRDIYFDVEYRNQNSLMNESKVISETLGNIEGVVNEPSNNGLAKN ITEFWKAWQTLSKNPSTEDLAARSAVVQQAMAMADSFNSMANQFATMGNNITERINVKVS EANSYVTEISDLTKQIKHIESGGDNANDLRDKRDYLVDQLSKLGNVKVTETSQTYQITFG TKQVIDDLNSDSIVQADVAGVTSGEIFGYVQSRDTFIAEYTKQIDLMANTLATGKIEVTL PAGSILPKGMTPPAGAKMDPANPRKLAADAKVTVDGLNGLHRLGYTLEDPATNGKDFFVT SDGSGKFTAENIRVNPDIAKDLKKIAASLRIETVSKPPAAPTDKVVQSNGDLALLIGGLA EKTFDFGGTALTASSTYGGYYEAVMSQLGVQTDHAKKMLENGELLTDHADSLRQSISGVS PDEETANLIKFQHAYNASARVITVVDEMLDKLINGTGVVGR >gi|333602071|gb|AFDH01000143.1| GENE 55 67690 - 68190 438 166 aa, chain - ## HITS:1 COG:no KEGG:PPE_04414 NR:ns ## KEGG: PPE_04414 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 1 166 1 166 166 102 35.0 6e-21 MSVSEIVNVLNRIIECHQELRELGTRKREAILQNSIEELSAIVQKESKAVKEIQELDQRR VVKINEYMVTRCYKTNPFITVGELVKLVFKAEEKQQLMDCQERLLKEIRELKELNALNQQ LVEQSLGFIDLSLDLLTATPEQDAIYANPTQQGQAKRKNAYFDTRA >gi|333602071|gb|AFDH01000143.1| GENE 56 68216 - 68479 346 87 aa, chain - ## HITS:1 COG:no KEGG:PPE_04415 NR:ns ## KEGG: PPE_04415 # Name: not_defined # Def: negative regulator of flagellin synthesis (anti-sigma-D factor) # Organism: P.polymyxa # Pathway: Flagellar assembly [PATH:ppy02040] # 1 87 1 86 91 73 54.0 4e-12 MKINDSHRIGNVNPYAKHKEQFQTAAADKRNRPKDEVQISTEAKELLGAAGDENRMRRVE ELKQQVKSGTYHVEAGKIAEKLLPYLK >gi|333602071|gb|AFDH01000143.1| GENE 57 68624 - 69034 190 136 aa, chain - ## HITS:1 COG:no KEGG:PPE_04416 NR:ns ## KEGG: PPE_04416 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 1 115 1 115 136 135 56.0 5e-31 MNVQNCPRCGKLFVKGFAETCPACVKDIEAQYVACADYLRQNRKCDLQELHEETEVPMRQ IIRFIREGRISIADSPNLTYPCEVCGNPIREHTMCDSCRQRLVRDVNQMMDEGKNSANAE KDAHHFRITDRLKDRH >gi|333602071|gb|AFDH01000143.1| GENE 58 69171 - 69686 214 171 aa, chain - ## HITS:1 COG:DR1389 KEGG:ns NR:ns ## COG: DR1389 COG1040 # Protein_GI_number: 15806406 # Func_class: R General function prediction only # Function: Predicted amidophosphoribosyltransferases # Organism: Deinococcus radiodurans # 51 156 114 204 219 68 40.0 4e-12 MKEWLASYKYRGNERLLPLFSGMMVHAYHQLIKELVAAGHEGSGFHCISYVPMNVSRLAE RGFNQAEAMAVELGRRLSLPVMPLLERSRHTAKQSFKSRGERLNDLQGAFKLLEEATGSI ARLQEGAAGQGWPIRVLLLDDVYTTGSTLNQCAETITQSLPVEVYGLMWAR >gi|333602071|gb|AFDH01000143.1| GENE 59 70017 - 71567 620 516 aa, chain - ## HITS:1 COG:BS_comFA KEGG:ns NR:ns ## COG: BS_comFA COG4098 # Protein_GI_number: 16080600 # Func_class: L Replication, recombination and repair # Function: Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) # Organism: Bacillus subtilis # 20 510 42 458 463 269 35.0 1e-71 MAELLENSVWKAYIQLAYLNGDITLTNGLQSNQMRKFPAFWRRQTTYSCKRCGSGKLHFT PCYHCGTDCAYCEECLTMGRVRSCTLLIEGVKGNYKGEEDVYRWPGDVKESPRGNRYPKN STRESAFDPTLEVYLTPWGLSPAQTAASKEALAFLSSTSPPGSKDAAGKAGLPRSGGDLD AGEKGGKTALSFLIWAVTGAGKTEMIFPLLQYELAHGRKVAIATPRRDVVLELQPRLMRA FEGRSIVTLYGGGSQTWENGDITIATTHQLMRFAHAFDAVIIDEIDAFPYLNSAALEFAA RKALAPGGRYVLLSATPPRALQREAASGRLPHVTVPVRFHRHPLPVPKRVPVPPLRRILR SGALPQTLRARLEGSLERGAQLFVFVPEIKLVDPLVGLLQGLWPDKVIAGTSSKDRERSV KVTDFRGKVTDILVTTTILERGVTVPKTDVFILDADSSLFNEAALVQMAGRAGRSKDDPR GLVFFAGLENTVSQTGAIRQIKKMNRTARKRGYLLN >gi|333602071|gb|AFDH01000143.1| GENE 60 72345 - 72737 244 130 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|322382402|ref|ZP_08056305.1| ## NR: gi|322382402|ref|ZP_08056305.1| hypothetical protein PL1_3024 [Paenibacillus larvae subsp. larvae B-3650] hypothetical protein PL1_3024 [Paenibacillus larvae subsp. larvae B-3650] # 1 130 7 138 139 93 38.0 4e-18 MWTGLMLFVGSYIFCVCMLHALKRPNEEVRSYHLLLVTKDNQLHIEWYIRSLFFLARFSG KSLTVSVIDEGSTDDTLRIAEKLSRSYELKIRTVLPESSWEEWASSPERDNLVVMHVSNQ KQLVKLPLFE >gi|333602071|gb|AFDH01000143.1| GENE 61 72788 - 73513 697 241 aa, chain - ## HITS:1 COG:BH3628 KEGG:ns NR:ns ## COG: BH3628 COG2197 # Protein_GI_number: 15616190 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Bacillus halodurans # 3 241 2 235 236 238 54.0 7e-63 MDNQGSPKRNVRLILADDHQLFREGLKRIINMEDDMEVIGECGDGIQVIELCNEMQPDVV LMDINMPLENGVVATERLKLIFPDVKVIILSIHDDESYVFETLRKGASGYLLKDMEAEAL INAIRSVVAGHAYIHPKVTGKLINQLRRMTYLDDNGVMGSGNGVQESGLKYIHVPTSPLT KREAEVLRLMAEGKSNKLIGEFLYISEKTVKNHVSSILQKMEVDDRTQAVIIAIKNGWVT L >gi|333602071|gb|AFDH01000143.1| GENE 62 73485 - 74672 889 395 aa, chain - ## HITS:1 COG:BH3629 KEGG:ns NR:ns ## COG: BH3629 COG4585 # Protein_GI_number: 15616191 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Bacillus halodurans # 6 368 7 364 377 257 42.0 3e-68 MQVDALDRVIKNAIEVMESSKYQVFEICESARGERESLLRELSQVKDEVTQTIELVDNLE RGYKRARIRLTEVSRDFARYRENDIKTAYEAAISLQLQLTVSREKENHLKERRNDIQQRI KNVDKQLERAEMIVSQMNVVLEYLSGDLNQVTRILESAKNRQLLGLKIILAQEDERKRMA REIHDGVAQTMANVVLRTEIAERMVTKQEYTAAKEELIDLKSQLRCGLEEVRKMIFNLRP MALDDLGLIPTVRKFVQDFEDKTQVHTKLEISGKETRLPSGMEVAIFRLIQETFSNILKH AHATFVTLELSFQEDLVSIFINDNGIGFNVDLTEHKIAKGNNFGIIGMRERLKLLEGDMA IYSEKDVGTKITMLIPIRAENKEEIGNGQPGESQA >gi|333602071|gb|AFDH01000143.1| GENE 63 74761 - 77379 2016 872 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_5883 NR:ns ## KEGG: GYMC10_5883 # Name: not_defined # Def: copper amine oxidase domain protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 11 872 23 899 900 644 42.0 0 MRFTNKLWRSTLAFVVAFQVVVSLPVPTFAADPTVTLKSESILTSGAVMKKYVWNFTRNN KKVSATANVVEVDLTNPYVKLDVIAGKNNQFTDKQTVATMAKAAGAVAAVNGDFFNTQAE GVPLGPQITNGQIMSTPSNKMSGLYAFGITKDNKPVIDLFAFQGAVKAKDGTSFELGGIN KTYYWYDDGTHSHTDGLFMYTDAWGQVDRSNDGKSVPTEVLVQDGIIKQIAPDTVIKVEP PKNGYILRAAGKSAQFVKEHLKVGDPLTADYAFINQRTGTAYANDAFKTMIGGHSILVDG AKATSFSRDVSSLGGYRSRTGVGYSQDMKKAYLVTADKNDNSAGMSLQEFQRFLIQIGAY KAMNLDGGGSTQMVERPLGTNNIQLAHVTEYGTQRAVVNALGVFSTAPKGQAKGFTMKGD TELFLNEKATFTFSGYDEYYNPIVSDSVQPTWSVSNNLGKFDGNAFIPTSFGSGKITATT SAGSSNLDVKVIRRADISSMKVSKASGQGLVAGGSYNLSVTATTKSGKTKEISPASLEWE VLGVKGEVKNGVLKVDSLEGSKNAQVIARYDGYSSMLNIPLGNESMWYNLDDKSILTTSE SFPAEVSTKLSIVKNESGNNSLQLAYDFTKGSGNKASYAVFNNTGAQLYGYPQTINLKVK GDESQNWLRAEVIDADGKKELVELAKNINWQGWKSISANLSGLNLKYPLTLRSIYVVNPE QGQDERALQGKIELDDISFSYPNYDTPSGSLNKVTLQIGNQMATVNGKSYWLEQAPINDR GNTLVPTRFVSEALGAKVLWDQEALRATVVKDGNIVDMWNNELDLITNGKRVTAEVPPRI MNNLTMVPLRLLTETLGWKVTWNQAEQIVNLQ >gi|333602071|gb|AFDH01000143.1| GENE 64 77860 - 79062 695 400 aa, chain - ## HITS:1 COG:BH3300 KEGG:ns NR:ns ## COG: BH3300 COG0192 # Protein_GI_number: 15615862 # Func_class: H Coenzyme transport and metabolism # Function: S-adenosylmethionine synthetase # Organism: Bacillus halodurans # 1 399 1 399 399 649 80.0 0 MALERGRRLFTSESVTEGHPDKICDQISDAVLDAFLENDPNARVACEVSVATGLVLVIGE ITSRSEYVDIQAIARKTIKDIGYTRAKYGFDYQTCAVLTSLNEQSPDIAQGVDQALEARE GQMSDAEIEAIGAGDQGLMFGYATNETPELMPLPISMAHQLSRRLTEVRKNGTLEYLRPD GKTQVTVEYDGDKPVRVDAIVVSTQHSEEVTLEQIQKDIKEHVIKPIVPEQFLDENTNYF INPTGRFVIGGPQGDAGLTGRKIIVDTYGGYARHGGGAFSGKDPTKVDRSGAYAARYVAK NLVAAGLAEKCEVQLAYAIGVAKPVSISIDTFGTGKVSEEKLVELIRKHFDLRPAGIIKQ LDLRRPIYKQTAAYGHFGRNDLDVPWERTDKAELLKAEAL >gi|333602071|gb|AFDH01000143.1| GENE 65 79215 - 79493 210 92 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_5885 NR:ns ## KEGG: GYMC10_5885 # Name: not_defined # Def: small acid-soluble spore protein alpha/beta type # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 2 90 4 92 95 80 52.0 2e-14 MSKNNNKVVPESHKALDLLKYEIAAEMGLPVGKQALGSLDLSTEFASELGSIPATSIKED YWGHISSRDSGAVGGAITSRLIRKAEEVLFTL >gi|333602071|gb|AFDH01000143.1| GENE 66 79724 - 80305 341 193 aa, chain - ## HITS:1 COG:no KEGG:PPE_04430 NR:ns ## KEGG: PPE_04430 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 14 184 21 190 190 98 40.0 2e-19 MRYTRGILSTIGLGVLLIGIPNVRAAAPTPGSADDPVVTKSYLEQYVQGLGGSVGTGGGS NSLTESKIKEIIAQEIAKLPTNNGGGGTSSTGQGNAMKVVTLKAGQTILADAGSELIVRN GKTLAVSNDDNGIPDVTAGKDLAAGTVVQNNHLLIFPRDGRGVKPDLKETADVYVMVRGG YVVQNADGSKVPQ >gi|333602071|gb|AFDH01000143.1| GENE 67 80366 - 83407 1170 1013 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_0596 NR:ns ## KEGG: Pjdr2_0596 # Name: not_defined # Def: S-layer domain protein # Organism: Paenibacillus # Pathway: not_defined # 26 234 1 211 327 211 60.0 1e-52 MSNMSSRIPNHSQNPKDIQGGDKKVMKKSLSVILSTAMALSVFSSVAFAAKADDFTDLKD LDAATKAKFDEMIQAGIFDGVETNRFGLNDKMNRAQFAKVAALVFNLKSSATTSSFDDVK SSDPANGYALPYIEAIYNAKITDGYAEGKFNPAGDVTKEQLAAFLIRGLGKDAEAKAKPG VSDKTVSDWAKGYVQLAQELKLFETPAGQPFNGTSPATRDLLVTSSYAAKQQIVPDKVSV AEAKATGVQKVEVKLNGPVDTAKAKLELKKGSTVVATTTEWAADKKSAVLTLSDNVKIGE ATYTVVLSGLEANAIDKASVEFQGVKEEIKSLEFVNASDTIAQSAKARVKLVAKNQYGEK SSLNSSGFTANTPGFDSNLTKDSDGFLVLTINTKNATGGSTPGVTIVPVYVYDNDSRVTV SKNFKLGVQPFVTKVELGDVKYASGKTALNSKGDTATISLTQYDQYGNPVAYDDTDAIVN VFTNVQPYVQEIKSEYGDFDNNNFGEVRVSLTGAVDKSGEYTINVYAGGSSATKKVSVNS AKVANKVEFGEYDDVIASRDTNKYIPVNAYDEQGNKLSVDDLVNDTNLARIRVSGSGVDV ATKLVKSGEHKGKIQITSVTAPENATAVVTLSITEPGVNDYKTKQFKINKARVADALKIK DEAATKIYSEAGKTVESEFKFEVLDQYGKKLDQIKGGPVVENGKSVSYAVYFEADVVTAP ENLSVTAKDARANLTVGGDGVRLTDFTAFNKGFKFVANGAPKGKISFTAKLQKNSGDGWK DASSNATRSIEAIDKNADLIYSVTEVKDLFAAKDSGLLTTDQKQPTSSAVAKSIKVTAKD GAGDKVAIPENRIETVTSSTYEVAVADVANGKGYVLGNKAGTSKISVYYKDIKDNYKTVT YDVTVRNEAVKVDKMTAEETYTGAADKTYAYEYMDLKVVDQYGVEYKEAKISEYDNLLGV RYILEEATNDSNTATGASVNSKTGQITVGSATKLTVRATAASGVSKTIYLTIE >gi|333602071|gb|AFDH01000143.1| GENE 68 83832 - 87701 3293 1289 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_5889 NR:ns ## KEGG: GYMC10_5889 # Name: not_defined # Def: S-layer domain protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 1284 21 1228 1232 294 25.0 2e-77 MKKHTRKWFSVLVLFSMLISLLPPLTAYAASTISITNMYNQTVNFGTDKEAPQDYNNVTR VTRNPFTLKASISNISDSQISSIYYEIMNVNTKQVTVEKSHKPTQTGANEITFSNITLSE GLNRIIVKMGDTNTLSSAPGWIYYTPTTNLTDFTVNNAGLVDGKIYPVDRGNIKLGVTAV DIKAKASNANEVKAYETGSTVPKIGILNRTEGMVYFRGGDAAAGCGSTGEICLKAGDNRI VFDSSNDSNSYQTEKRFVYDNGQPFAFGVEMGVTSAGTTQSLLDKPNFDVKELTLKTSLK VDYDSTGALRQNRVDVLINGQQVAAGLDLNTPSSSVGGAVKKFTPNSTFTRANEYAAYDL VLDLNVAGLTDWTAARNPQTIQFIFKDATGSAGQGESSYTFNYTNPNEAGILDVSMVTGK DAATNTNIYTSLTESATTEVNELPVEMKIKANGHTAKIKVFLDGKEFAEVANPSNNEFIY KLENITDGQKNIKFVPVDASGTLVENGSRQYTIQINNAPYIIANQIASPGNTGITLRDVK QLTCGSDVACLSGKAVNYLPTGAGNKVELYVNDKMIELQASDFDANRQFKFDLARLGTKY GITPAQLFSEGANQIKFFMYVNNSLISKAIYNVNLITAEAPEIVLFVPNEDSVGKSKFPK AQKPDMYATNERTVQLNGKFFNTTNAGNVTVSLNVYSKDKDGNPRADYHVWNSVSGSSTN VSGGFFTGMPSSGVEFRTNAIKLPEKGEMTFQFTVTNQANMSVSKTVTIAREPLPYVVKK PVLIENEKHEYQANINSNFYTIVIDAEKADSVTFGKETASKQTLNENGLDVDRFSYEVRD LKAGKNTIKFTVNRGTSKTNGTIVLYNTNTPVVGAEYLDGMTSNFNVFNGDVKLKFDKDT KLMRFKPTFDNNQYITADRKVYFGIADTVDGRVDKINNPFSSDYAKSLLARKGKGDNFSA ASKLFYIDSGTIPEKASGQSTEDYLQNALRGRGMEPFDLKNNFYTRSVDQTVVPTKRGTL TLKFDQAIRDDAGKYISVFFFDTYEQYNTLTGRGWVNLGGVVDVKSNTVTVPFEKFGYYQ VMYMDKGFDDVTGHPWARNELETLFSKGIMNSKTNYSFSPNEPISRGEFATMLVRIFDLP LNYSGTPTFIDVFKVENLYGLYDFKYIETAARAGIVRGTAGNRFSPDSSLTRQDASVMIA RAADLKLGTDNKKILAGLQKTFTDANIIDYYAQPAVEAVVKAKLIEGKPNVLIEGQKKET VRFDPLETFTRAEAAIVAIRVMKQQGKLK >gi|333602071|gb|AFDH01000143.1| GENE 69 87967 - 89079 854 370 aa, chain - ## HITS:1 COG:BS_tagO KEGG:ns NR:ns ## COG: BS_tagO COG0472 # Protein_GI_number: 16080606 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase # Organism: Bacillus subtilis # 6 359 10 355 358 266 46.0 3e-71 MYGLYVLGFVVSCLFALLLTPLVKRFAFWVGAIDKPNHRKVHTRIMARMGGVAIFLAFVG AYFVISPALSDVNGNAALALVLGGFVIVLTGALDDRFELSPRWKLLGQFVAACIVVACGL KINEFNVPFGGHFSLPDYVSMPLTVLWIVGVSNAVNLIDGLDGLSAGVSGIGTGTILVLA LLTPFSDAFTVILLCTILLGSISGFLFYNFHPAKIFMGDSGALFLGFALATLSILGFKVS VVLSLLTPIMILGVPLSDTFFAIMRRFLNKKPISEADKNHLHHCLLQLGFSHRTTVLIIY GIAAMFGAVAIILNNYTDSAWLTVLIVVILLFVLVVGAEAIGIISSSQKPVIRFLQKLLF KPSVNSRLPK >gi|333602071|gb|AFDH01000143.1| GENE 70 89198 - 89977 718 259 aa, chain - ## HITS:1 COG:TM0818 KEGG:ns NR:ns ## COG: TM0818 COG1922 # Protein_GI_number: 15643581 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Teichoic acid biosynthesis proteins # Organism: Thermotoga maritima # 14 249 35 269 274 158 34.0 1e-38 MTANANANASVPIVRIYGVPVSKMNMKDTVKYLTGAIESRIPHQIITANPIMIMSALEDP AYMEMMRRVELIVPDGAGLVWAAGYVGQPVAERVPGIDLIHELMRAGEPRRWKVYLLGTT SDTIQAAAAKLARDYPLIDIVGFRDGYFGEAEDRQVVDSIRQLQPDILLVGRSSSTQEPW ISKYKRDLDVPVIMGVGGSFDVLAGKLKRAPKIFQKLKLEWFYRLLQEPSRFGRMLALPK FAWKVIRDKENVLKTDENH >gi|333602071|gb|AFDH01000143.1| GENE 71 89993 - 91141 1109 382 aa, chain - ## HITS:1 COG:alr4509 KEGG:ns NR:ns ## COG: alr4509 COG2327 # Protein_GI_number: 17232001 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Nostoc sp. PCC 7120 # 11 327 2 292 349 156 33.0 7e-38 MGREIGHKSKRLVVSGYYGFDNSGDEAVLQSILFALKEQGETAGIHIEPVVLSANPQRTR EMYGVEACHRMKVPDLFRAIKSSDGLISGGGSLLQDATSSRTIPYYLLVLKLAQWMRKPT FIYSQGIGPVNNPRFFSWIRSTFKKCAMITVRDQESAALIGRMGVPASSVSVVPDPVMGL PLRGEAASGKAGTAADASGETGRVPVVGVSVRFWNADRSELDALAEALRAVMDRRRVEVR LLPFHLPSDEEASAYVAERLSPAGEGGDVRIVRGVTHPQDMLAEVSACDVLVGMRLHSLI YAASQFVPMVGVSYDPKIDQFLARLGMKAAASTQSFDAAAVAAEIGRLLDGRREWAEGKQ AAIDRLKKEAQLPAQQIMQFYR >gi|333602071|gb|AFDH01000143.1| GENE 72 91105 - 93168 1551 687 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_5893 NR:ns ## KEGG: GYMC10_5893 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 678 1 667 672 575 45.0 1e-162 MVHRYTAANRLLRKLLWWLVIIGLLASLPLAFFREQTEKSANQVEFVFDYRDLLEMADVR PNPQGFVSEQLQAMKKAGIGSLSVYESTLSELRLSRRIEVFSSKDATSLTQKPISPNENF TYILFTDPASESQIKPMIETAFNKLGVKTSPWSFKNQTGMIIEMNMEEANMKPMDPDPIA LQMMKDEGFRIVVRLGNKREFVTNEMDALLAKLYKMGARRIIIDGDYAPGYSDDPEQVTL HKMGILLKKYDMGLANIEMLKQPQKGFGSLAKDTDYNVVRLHSFTEKDGEKLTENLTKED QEARIQQTADRFVLAVKDRNIRMIFLNGRAVKNLDKAAILTPLDGLYESLSGKDGAIKRI EDAGFKVEPAKQFDYTYNAYQNVARFFTLIGGVSLIVLLIGYFVPEAILALFIIGLLGAA GLFLKSPDLYAQGLALACAISAPSIAVIEAIRSIQSGRAAKAKSAVLYALGLLIKTTLIS LIGVVYLVGLLNHISYFLVLQQFRGVSLLHLLPIAIVGLYLLFFRETLNYRERGERVKKL LFTNISVLWIIAAAAGAGVIYYYLSRTGNEGQTSAIERYLRSFLENTLGVRPRNKEFMLA HPLFLLGAYLSVKYRNAVYLLLIGVVGQLSIVDTFAHLHTPLEISGIRITYGIVFGAMIG LVLIAVWEIASRSWKAWAAKSGTRANG >gi|333602071|gb|AFDH01000143.1| GENE 73 93268 - 94962 1676 564 aa, chain - ## HITS:1 COG:BH1106 KEGG:ns NR:ns ## COG: BH1106 COG1109 # Protein_GI_number: 15613669 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Bacillus halodurans # 8 558 7 570 578 584 52.0 1e-166 MTRVQNLYEKWLQDPSIDEETKKELQSIAGQDKEIEDRFYKDLEFGTGGLRGVIGAGTNR MNLYTVGKATQALAEFALKNGGAHPSVVIAYDSRHQSPEFALEAALVLAGNGVKAYVFES LRPTPELSFAVRELKASAGIVVTASHNPPEYNGYKVYGADGGQLVPHDAEQVLANIQKIK GFDSVRKISRSEAEEKGLLEWLGGEMDEKYYAAVTSVSQHPDVIKQTSGDFRIVYTPLHG TGNKPVREALKRIGFEQVRVVKEQEQPDSNFSTVKSPNPEEREAFTLALRDAKEWDADII VGTDPDADRMGAVVKDDKGEYFVLTGNQSGAIIVNYLLGSLKERGQLPSNGVVIKTIVTS EMGAVIAESYGAKVINTLTGFKYIGEKMTEFESTGEHQFLFGYEESYGYLAGTYARDKDA VVAAMLICEAAAYYKSQGKTLYDVLQELYRQHGFFLEKLESKTLKGKDGVEQIGRMMEDW RNNPPVSIEGVEVAEVEDYSRGINGLPKENVLKFKLKDGSWFCLRPSGTEPKIKFYFAVK GTTGDEAAKQLEGLVRFVLGRVEQ >gi|333602071|gb|AFDH01000143.1| GENE 74 95008 - 95436 465 142 aa, chain - ## HITS:1 COG:lin2668 KEGG:ns NR:ns ## COG: lin2668 COG0764 # Protein_GI_number: 16801729 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases # Organism: Listeria innocua # 1 141 1 141 144 184 63.0 3e-47 MLDNKQIQEIIPHRYPFLLVDRILEVEDGVRAVGLKNVTANEPFFQGHFPGYPVMPGVLI LEALAQVGAFAILNVEANRGKIGLLAGVDGFRFRRQVTPGDTLTLEVKITRLKGTIGKGQ ATAKVGEELVAEGEIMFALANA >gi|333602071|gb|AFDH01000143.1| GENE 75 95638 - 96192 193 184 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase [Cryptobacterium curtum DSM 15641] # 5 184 484 687 904 79 30 1e-13 MNLPNLLTISRFFLIPVYLYIFYAGYTKLAFLVVVLAGITDIADGYIARKRNLVTQMGIM LDPLADKLMMIAVIISLLSSGMIPWLAAAAFFIRDIGMIAGSAFFHFRGKQTLPANAMGK LTTVLYYLAVLLILFHVPYATEYLAAVILFSFVTSIIYVAQFNTVNRKTRRLSTEEISPV KKGS >gi|333602071|gb|AFDH01000143.1| GENE 76 96309 - 96572 186 87 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|322383078|ref|ZP_08056905.1| ## NR: gi|322383078|ref|ZP_08056905.1| hypothetical protein PL1_1927 [Paenibacillus larvae subsp. larvae B-3650] hypothetical protein PL1_1927 [Paenibacillus larvae subsp. larvae B-3650] # 7 85 95 176 178 77 47.0 3e-13 MSMEEESKETETASSTQAKEPDTGKPGGTSRSAGALRVLKKLRVPLIFLGALIVGLWIGY SGIGGQPTLDIFRISTWKHLFDLVFAD >gi|333602071|gb|AFDH01000143.1| GENE 77 96596 - 97465 1053 289 aa, chain - ## HITS:1 COG:BH3737 KEGG:ns NR:ns ## COG: BH3737 COG4786 # Protein_GI_number: 15616299 # Func_class: N Cell motility # Function: Flagellar basal body rod protein # Organism: Bacillus halodurans # 1 288 1 279 280 143 39.0 5e-34 MNNSIINASVTMQGLQQKLDVLANNMANVNTVGYKKKEASFENVLTNTMNQPQGFMKTGR MTSLGFPQGWGAKLVGLQNIMTQGSLKPTDEPFDLAIEGDGLFEVTIPGSNTPAWTRDGA LKLSAYNKVDPATGNVTKAMGLATKDGYFVKDTASNQPIEIAIDPADPTLQNSRVRVDEQ GRVVVYNEANPASTGRQVGQIKLVKVINPQLLGEADGNYFRLPANVAQNNVFAANTDGVT VKQGFLEQSNVDLQQEMSELVMIQRAFQLNSRAISSADTMMGLANNLRG >gi|333602071|gb|AFDH01000143.1| GENE 78 97542 - 98360 720 272 aa, chain - ## HITS:1 COG:BH3738 KEGG:ns NR:ns ## COG: BH3738 COG4786 # Protein_GI_number: 15616300 # Func_class: N Cell motility # Function: Flagellar basal body rod protein # Organism: Bacillus halodurans # 1 272 1 273 274 153 35.0 4e-37 MLRGLYTAASGLTMQQRKHDTVTNNIANLNTPGFKQETTSARSFPEVLISRIRGGEAGDG TVVNVGRMNTGVFAEETARLMAQGPLQQTGNPLDYALVSDIQVNGLKFDNGGKAVGPDGT VVYQPEALFVVENPQVAGERHYTRNGKFTVDAEGFVANADGYRLVAANGQTVRYDPANPP IPLVMKVQNPNVLLPEGNGLFTVGANDEGQVVALAAGDQVEVRKGFVERSNVDPTQAMVD MTTAARAYEANQKMVQFYDRSMDKLVNDVGRV >gi|333602071|gb|AFDH01000143.1| GENE 79 98370 - 99371 883 333 aa, chain - ## HITS:1 COG:BH3739 KEGG:ns NR:ns ## COG: BH3739 COG1077 # Protein_GI_number: 15616301 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Actin-like ATPase involved in cell morphogenesis # Organism: Bacillus halodurans # 1 331 1 331 334 470 72.0 1e-132 MLSKDIGIDLGTANVLIHVKGRGVVLDEPSVVAIESDTKRVLAVGEEARRMVGRTPGNIV AIRPLREGVIADFEITEAMLKHFISKVGGKSWYSHPRILICAPTNITSVEQKAIREAAER SGAREVFMEEEPKAAAIGAGMDIYQPSGNMVVDIGGGTTDVAVLSMGDVVTSSSIKIAGD KFDTAITKYIKNKYKLLIGERTSEDIKVQIGTVQADSVQNEMDIRGRDMVSGLPLTITIR SSEVQEALWDPISSIVTAAKSVLERTPPELSADIIDRGVILTGGGAMLHGLDQLLADELK VPVLIAEDPMHCVVKGTGIMLDNLDKVTKRKFV >gi|333602071|gb|AFDH01000143.1| GENE 80 99539 - 99829 320 96 aa, chain - ## HITS:1 COG:no KEGG:PPSC2_c4949 NR:ns ## KEGG: PPSC2_c4949 # Name: not_defined # Def: sporulation transcriptional regulator spoiiid # Organism: P.polymyxa_SC2 # Pathway: not_defined # 1 82 1 82 95 132 93.0 4e-30 MHDYIKERTIKIGTCIVETRNTVRTIAKEFGVSKSTVHKDLTERLPEINPELANQVKTIL EYHKSIRHLRGGEATKIKYRKTKPVKSAEPLVTVKS >gi|333602071|gb|AFDH01000143.1| GENE 81 99892 - 99996 73 34 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFPPLTSYFRPIILTDKVKASPPDVFRMQAKKDG >gi|333602071|gb|AFDH01000143.1| GENE 82 100028 - 100774 777 248 aa, chain - ## HITS:1 COG:BS_spoIIQ KEGG:ns NR:ns ## COG: BS_spoIIQ COG0739 # Protein_GI_number: 16080708 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane proteins related to metalloendopeptidases # Organism: Bacillus subtilis # 30 238 15 216 283 144 41.0 1e-34 MRDGKQEFQNKEEAPQTVTGAGNVPNSAWKRFLAKKWVFPATYVAAAAIILTLMWVYQDA VKKPVATNTPADSVQSDKPAGETANKDNAVPVGAKTESIQWPVKDRSQVTISLPSYDSKG SNEAKQAAMIEYGDTITPHVGVDLVRADKQAFDVSAALSGKVTAVDKNPVVGNLVEITHD NGLVTVYQSLGEVKVAKGAAVKQGDVIAQAGRNELEKDQGVHLHFEVRKAEDGTAELPEQ LLPEFKPQ >gi|333602071|gb|AFDH01000143.1| GENE 83 100852 - 101892 862 346 aa, chain - ## HITS:1 COG:BS_spoIID KEGG:ns NR:ns ## COG: BS_spoIID COG2385 # Protein_GI_number: 16080728 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Sporulation protein and related proteins # Organism: Bacillus subtilis # 33 346 34 342 343 252 47.0 7e-67 MNFKRRSKLKQPALLWTGIAVSGLLLVTVLLPAVVVKQQTGTFADPHDTEAVSSSAGMVM VPVYLSKQKQIQTVSLEQYVKGVVAAEMPAEFSEEALKAQAIAARTYIVRRILTGDFSNV PVKEAWVTDTIQHQAYLTDDQLQKQWTGKAYESNSKKIDAAVKATADLILTYEGKPIQAT FFSTSNGYTEDVRNVWGSDVPYLKSVSSPWDEKLSPKFKQTVTLSYKDILQKMGLPASSS LNLGSIKVLERTESKRVKTAMIAGKAFTGKEIREKLGLNSTDFEAALSGSDWTFTVKGYG HGVGMSQWGANGMAKEGKKAAEIASYYYPGAKLTSASTLLNKKTQK >gi|333602071|gb|AFDH01000143.1| GENE 84 102118 - 103440 1061 440 aa, chain - ## HITS:1 COG:BH3749 KEGG:ns NR:ns ## COG: BH3749 COG0766 # Protein_GI_number: 15616311 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine enolpyruvyl transferase # Organism: Bacillus halodurans # 1 425 1 425 440 540 66.0 1e-153 MSKIIVRGGRKLAGKIKVNGAKNAVLPIIAASILAAEGESVIHDAPPLDDVLVINKVLRS LGLQLSYHNHSVKVNAQAIETCEASYELVRKMRASFLVMGPLLARLGKARISLPGGCAIG TRPIDQHLKGFEAMGAEIELGQGYIEARVEKRLKGAKIYLDVASVGATENIMMAATLAEG TTIIENAAKEPEIVDLANYLNAMGAVVRGAGTGVIRIEGVEKMKGAVHSVIPDRIEAGTY MIAAAITRSELYVEGAIGDHLRPVISKLQEMGVHVEEDENGILVRADKPLRAADIKTLPY PGFPTDMQSQMMALQLVADGTSLVTETVFENRFMHVDEFMLMNASIKVDGRTAVVSGSNK LKGAKVCATDLRAGAALILAALVAEGETEITGLHHIDRGYVDITSALRSVGADIQRVVPQ EEEQEIPQEIGLFAVQPTWA >gi|333602071|gb|AFDH01000143.1| GENE 85 103606 - 103857 305 83 aa, chain - ## HITS:1 COG:BH3751 KEGG:ns NR:ns ## COG: BH3751 COG4836 # Protein_GI_number: 15616313 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Bacillus halodurans # 13 83 6 76 77 63 50.0 9e-11 MSNMEELTTVVPQMPLINIVVYLAAVGLSWWALQQFRFDVLLKQPRSPAAKMLQVFMSIG LGYLVASFFLKYLEWSVGLNGIF >gi|333602071|gb|AFDH01000143.1| GENE 86 103862 - 106414 1944 850 aa, chain - ## HITS:1 COG:BH1491 KEGG:ns NR:ns ## COG: BH1491 COG1404 # Protein_GI_number: 15614054 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Subtilisin-like serine proteases # Organism: Bacillus halodurans # 42 312 313 583 588 172 38.0 2e-42 MNRKFRYKWMYGWLGIVLLVWTVGISNVQAYPVSSDPLRVKQTYLDDIHMDEGWAQAGDS DEPVIVAVVDTGVDLTHPDLEGRLVPGANLLNPQEKPQDDNGHGTNVAGIIAAKMNNDKG IAGIAPNAKIMPIKALEADGTGGETKLGEGIRYAVDHGAKIVVLSLGLNKYSSFMAGTVR YAEERGVLLVAASGNEGGSVKYPAAYPTVLGVGGMTSARLADDRSNYGPDLDLVAPWQVY TTAKGGGYESKEGTSMAAPQVAGAAALLWGRAPYLEPWQLRELIKQTAEDLESPGWDATT GFGLLRVDRLMKEPLLSDRFEPNDDSGHAPMLPVHTLIHADFSSGKDTDWFTLDSPYDGF VKLVLKTSDASPVSIRYFRDNKEAEEVFTTDPQNPVVTLPVQKGKSKIAASLLDPGRAGA VLYTLQTDFQIYQDAFEDNDHQYKATSLPARSQIVKGTFHQENDQDWFMISFKKSGTLRL KTSVDTARIDPVVLIQKKGEKSTTFDQFGEGATEATPLMNVTPGDYYIRISNVKDNTQPV MGEYTLSVDYTPKLIDPNEPNNKPYQATTLTLHEDRPGVIESASDLDWFQFRLEQESLVQ LKFGSLQRGCDMAFTLYDHTLKELDSKSSEGSAENLVLDRRLPAGLYYIKLQSDRAATQQ MYQLNAAAQPLVAGFSDIHGHWAEKAIADLASRHVIDGDGSYKFYPDLPITRAQAAVMLA NGFRLDKNRPVDYPDLSSSHWAYDSIARTTMAGYMDGYEDGHFRPDQPLTRMEMTQVIAN TMQMAGKYRGRSPFLDVNDRYWGVGILKQMSGDGWIRGFPDGTYRPDNQATRAEFAALLS RFSNVFGRKR >gi|333602071|gb|AFDH01000143.1| GENE 87 106551 - 108065 1251 504 aa, chain - ## HITS:1 COG:all4883 KEGG:ns NR:ns ## COG: all4883 COG1007 # Protein_GI_number: 17232375 # Func_class: C Energy production and conversion # Function: NADH:ubiquinone oxidoreductase subunit 2 (chain N) # Organism: Nostoc sp. PCC 7120 # 14 455 15 443 520 243 38.0 5e-64 MEPIRIHVQDLTHLLPEMTLVITAILLSVLDLFLPKGVNRKWIGWLSLAGIAVSIAFVIA QLNPGQGIVLLNESYRVDDFGNLLKLAFLGGTALIILMSLGSVEDGEIPHVGEYYYFLLP AVLGAMVMASSADLITLFVGLELLSITSYVLVAMKKKNTRSNEGAFKYVILGGISSAVIL YGMSFLYGIAGTTNLGAIQAAIVAGYESYKPLLYVSFFLLLAGFGFKIAAAPFHSWAPDV YQGAPTPVAAFLAVISKGAAFAILFRVFYVLLALGQFGDEGLQKDIFLALSVVAATAMIW GNTVALRQKNVKRLLAYSGIANAGYLLVPLAVHINLVQVDNFSKFFFYLTAYILMNIGAF AVLLIIERSTGDEEIKGFAGLYYRAPWTSAAAVILLLSLAGIPVSAGFFGKLYVLFGTMQ AHLYWLGAVMMITSVISFYYYFGIIRQMFMRADLEDRPVSVPVPLGITLWICAGLTLLLG LVPGYLLAYIDRIFSLTRDLLILS >gi|333602071|gb|AFDH01000143.1| GENE 88 108069 - 109697 1711 542 aa, chain - ## HITS:1 COG:mll1354 KEGG:ns NR:ns ## COG: mll1354 COG1008 # Protein_GI_number: 13471394 # Func_class: C Energy production and conversion # Function: NADH:ubiquinone oxidoreductase subunit 4 (chain M) # Organism: Mesorhizobium loti # 5 526 6 481 501 287 35.0 3e-77 MSANLLSLIVFSPLLGVLVLLFLPKENKKALQAVCMAATGIPLLLSIWLYAAYSNGASGM QFKEQLDWIRIPLNKEGIEGLASFYWTVQYHLAVDGLSMPLVFLTALVFTMAALASIYIK KRWKAYSIWLLLLEVGVFGVFTSQDLFLFFLFFEVTLVPMFFLIGIWGRVDREKAAGRFL IYNGLGSAIMLVAFVILVTTAGISQQITGNQLTVFYSGDIQTIVHNLLQDPAALVNQVSP NPQAENPFFLSGGMKTALLVMLLIAFGIKLPIFPFHTWMLKVHTEAPPPVVMIHSGILLK MGAYGLIRFGILLFPAQAQDWAWVLALLGVINILYGALLAFVQNEFRLVLAYSSISHMGI VLLGLAAFNPIGMQGAIFQLVSHGLISALMFLLVGSIYERTSTTELGKLGGLAKSMPFLS AILLVGGLASLGLPGLSGFVSELLAFIGLFGSARILAIIGAVGIILTAAYVLRGVMKMTY GPLPERYKGLPDARFIEAVPMIALVAFILLLGVYPGILSEPLQQTVNGFHQTIHSLAGKI GG >gi|333602071|gb|AFDH01000143.1| GENE 89 109687 - 111561 1575 624 aa, chain - ## HITS:1 COG:alr3956 KEGG:ns NR:ns ## COG: alr3956 COG1009 # Protein_GI_number: 17231448 # Func_class: C Energy production and conversion; P Inorganic ion transport and metabolism # Function: NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit # Organism: Nostoc sp. PCC 7120 # 2 613 1 691 696 426 41.0 1e-119 MISVYSQYAWLIPLFPLLAYVLITASGRSARRTGLYLSTAAIFASFVVALLILIERLGKG VQDYTWNGFQWLRVGDFAVSLGFEVNNLNAIMLIVVTLVSLLVHIYSIGYMKDDERVHVF FSYIALFSFSMLGLVISVNLVEFYLFWELVGVCSFLLIGFWYTKPEAKAAAKKAFIVTRI GDFGLFIGILLLFWSMPGHALDFNSVQNAFTSGQVESSAATWIALLFFMGAMGKSGQFPL HTWLPDAMEGPTPISALIHAATMVAAGVYLVARTFDVFLASDTAMQVVAYVGGFTAIFAA TIGTAQNDIKRILAYSTVSQLGYMMMALGVSATYTTGIFHLFTHAFFKALLFLGAGSVIH AVHTQDITKMGGIGGRMKITAWTFAIGTLALSGIPPFSGFWSKDAILSQAYETNSLLFWV GIVGAFFTALYMARLFFLVFWGKPRSGQEVHESPVSMTLPLLLLAVPAALAGFLYTPWSG WFGDWLTGRTEEEAVHAGVMLLSTAAGVLGLVLGYLLYARKPGSFVFSAKFPWLYNLVSR KYYIDEIYQTVIVLPLRGIGYLLQAVDTFIVDGVVRLVAVAAVGLGRTGSRLQNGQVQTY GVITLLGLLVLILAVAGRRFIHVG >gi|333602071|gb|AFDH01000143.1| GENE 90 111644 - 111955 405 103 aa, chain - ## HITS:1 COG:MA1503 KEGG:ns NR:ns ## COG: MA1503 COG0713 # Protein_GI_number: 20090362 # Func_class: C Energy production and conversion # Function: NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) # Organism: Methanosarcina acetivorans str.C2A # 1 102 1 101 102 75 51.0 2e-14 MTSVVTPYLTLAAILFCIGLYGALSKRNGVIVLLSIELMLNAVNLNLVAFAKMGAQPALT GQVFSLFTITVAAAEAAVGVAILIALYRNKGTGNVDEMNSMKH >gi|333602071|gb|AFDH01000143.1| GENE 91 111957 - 112487 730 176 aa, chain - ## HITS:1 COG:alr0225 KEGG:ns NR:ns ## COG: alr0225 COG0839 # Protein_GI_number: 17227721 # Func_class: C Energy production and conversion # Function: NADH:ubiquinone oxidoreductase subunit 6 (chain J) # Organism: Nostoc sp. PCC 7120 # 17 174 12 169 202 90 34.0 1e-18 MFSGLGSFLSQGENWWFLLFAICAIGGAIYMITFTKVVHMVLSVAFTFVSLAGLYVLLEA EFVGFVQILIYAGAISILMIFGIMMTNHRAEEKAKSGPVQKILLGIGSLGLFGNLFYAIQ NTTFPSASGSLQTGQDNTLEIGKLLYNEYVIPFEIMSVLLTVAFIGAIVVAKREED >gi|333602071|gb|AFDH01000143.1| GENE 92 112480 - 112932 516 150 aa, chain - ## HITS:1 COG:sll0520 KEGG:ns NR:ns ## COG: sll0520 COG1143 # Protein_GI_number: 16332085 # Func_class: C Energy production and conversion # Function: Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) # Organism: Synechocystis # 6 122 25 139 193 93 41.0 1e-19 MKGLIKGLGVTLKTMTQKKVTYAYPDVPLQMPDRFRGIQHFEPDKCIVCNMCAKVCPTEC ITLTGKPNPDPDKKGKIIDTYDINFEICILCDLCTEVCPTEAIVMTNHFELSAYSRDELF KDMQWLTDNNTLVRKENNSALPKGGAKKDV >gi|333602071|gb|AFDH01000143.1| GENE 93 112978 - 113985 1069 335 aa, chain - ## HITS:1 COG:RP796 KEGG:ns NR:ns ## COG: RP796 COG1005 # Protein_GI_number: 15604628 # Func_class: C Energy production and conversion # Function: NADH:ubiquinone oxidoreductase subunit 1 (chain H) # Organism: Rickettsia prowazekii # 32 328 30 327 339 278 54.0 1e-74 MLDLVGQPLTWTTGLIFAAYGVVLLLIILGFVTYAIYFERKVIGWMQGRYGPNRVGPLGL LQTVADVFKLLIKEDTIPRKADRELFILAPVLTFIPAFVVVATIPFTANLIHADLDVGLL YYVALSGISTLGMILGGWASNNKYALLGGMRSAAQMISYEVPLVISVIGVIMMTGTLNLH KIVEAQGDNFWNWNFLPQIVGFIVFVIAGVSELNRTPFDLPEAESELVAGYHVEYSGFRF AFFMLAEYVYVFAIASLTTVLFLGGWHAPFAFLTFIPGIVWFLLKFSFIVFFFFWIRATL PRIRIDQLMGLGWKVLLPLALLNIFITALYMGLTG >gi|333602071|gb|AFDH01000143.1| GENE 94 113985 - 115082 1107 365 aa, chain - ## HITS:1 COG:SMa1529 KEGG:ns NR:ns ## COG: SMa1529 COG0649 # Protein_GI_number: 16263284 # Func_class: C Energy production and conversion # Function: NADH:ubiquinone oxidoreductase 49 kD subunit 7 # Organism: Sinorhizobium meliloti # 2 364 15 403 404 379 46.0 1e-105 MLRTEELLLNVGPQHPSTHGVFRIIVKLDGEIIREAIPVMGYLHRGTEKLAENLNYTQII PYTDRMDYVSAMTNNYVLVNAVERMLGLQIPERAEYLRILVMELQRIASHLVWWGTYLLD IGAMSPFLYAFRDREMIIDFFNELCGARLTYNYMRVGGVKWDAPEGWLDKIRAFIPYMKS KLEEYDRLVSGNEIFLARIKGVGRYDADTAIAYGLSGANLRCTGVKWDLRKDQPYCIYDR FDFDVPVGTNGDCYDRYLIRMEEIVQSLRIIEQALDQIPEGDTMGKAPRVIKPPEGDIYA PIESPRGEIGCFIMSKGRPEPFRLKFRRPSFVNLQILPKLLVGETMTNLITILGGIDIVV GEVDG >gi|333602071|gb|AFDH01000143.1| GENE 95 115087 - 116058 621 323 aa, chain - ## HITS:1 COG:Ta0968 KEGG:ns NR:ns ## COG: Ta0968 COG0852 # Protein_GI_number: 16082010 # Func_class: C Energy production and conversion # Function: NADH:ubiquinone oxidoreductase 27 kD subunit # Organism: Thermoplasma acidophilum # 225 317 34 125 150 97 50.0 3e-20 MTDKEKENPQETDIRSKPTKSDEKLEANTIEYKEKQGILSKEEKDELHTSLESTGSAGDG TAPRVPSPEQSASAAGTGESAPETPASGAAQRPDANRAAARSTAAAEAGGTAAAAVSGAA PTEGAAAEDGGDKAKVAAEARAARAAARAAKTAAPAEDAPPKPPSPNQPLLDRLVEILKG EVAENAVDEAFINEIDGHRPFVVIHGEHWVRAAEVFLQHEELQCGYLRSVSGVDLGSQLE VVYHLLSIPLRKEYGVRVRTEREAPSVPSVASVWPTADWNEREIYDLLGIDFPGHPNLTR IMMPDEWVGHPLRKDYEAYDPEV >gi|333602071|gb|AFDH01000143.1| GENE 96 116055 - 116573 498 172 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|154175216|ref|YP_001407461.1| NADH dehydrogenase subunit B [Campylobacter curvus 525.92] # 20 163 16 158 170 196 61 6e-49 MDFNLESITPEDRAELDRNVFMTTLEQVKAWARSNSLWPLTFGLACCAIEMMGTGASHYD LDRFGVIFRTSPRQSDVMIVAGTVTKKMAPLLRRLYDQMPEPKWVIAMGSCATAGGPYVK SYAVVKGVDQVVPVDVYIPGCPPNPAALIYGINKLQEKIRYEAKTGKQVTNL >gi|333602071|gb|AFDH01000143.1| GENE 97 116558 - 116923 245 121 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|154175415|ref|YP_001407462.1| NADH dehydrogenase subunit A [Campylobacter curvus 525.92] # 2 121 10 128 129 99 38 1e-19 MYAVKYVIVAIFVALGILLPVAALTIGRWLRPNKPNEDKATTYESGNEPVGEGQVRFNIR YYLFALMFVIFDVETVFLYPWAVAYNKLGLFALVEMCIFVLLLGVGLLYAWKKKVLQWTS I >gi|333602071|gb|AFDH01000143.1| GENE 98 117113 - 117517 302 134 aa, chain - ## HITS:1 COG:BH3753 KEGG:ns NR:ns ## COG: BH3753 COG0355 # Protein_GI_number: 15616315 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) # Organism: Bacillus halodurans # 1 130 1 130 133 130 55.0 5e-31 MSTFLLEIVTPERIVYTQNVHMVSVDGIEGQLGILPNHIPFVTPLKIAPATIKFENGKQE TVALNGGFMEVRKDKVVILAESAELPGDIDIERAKSAKERAEKRLTGKKDEADFQRAELA LKRALNRIGVYEHK >gi|333602071|gb|AFDH01000143.1| GENE 99 117665 - 119074 992 469 aa, chain - ## HITS:1 COG:BH3754 KEGG:ns NR:ns ## COG: BH3754 COG0055 # Protein_GI_number: 15616316 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, beta subunit # Organism: Bacillus halodurans # 1 469 1 470 470 675 72.0 0 MSKGRVVQVLGPVVDIEFERGHLPEILNAIKIQKTAQSADQENSEVTVEVAVHLGDNQVR CVAMSSTDGLVRGMAAIDSGAAISVPVGPATLGRVYNVLGDPIDGKGPADRTLTSPIHKQ APEYVNLTTQAEMLETGIKVIDLLAPYMKGGKIGLFGGAGVGKTVTMQELIHNIAQEHGG ISVFAGVGERTREGNDLYHEMSDSGVIAKTAMVFGQMNEPPGARLRVALSGLTMAEYFRD EEGRDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTTKGSVT SIQAIYVPADDYTDPAPATAFAHLDATTNLERAIAAKGIFPAVDPLASSSRILTPQVVGE EHYEVAQGVKRLLQRYKELQDIIAILGMDELSEEDRVAVNRARRVERFLSQPLHVAEAFN GMPGLYCPVKETVRSFRELLDGKHDDLPEAAFVNVGSIDEAVEKARTMV >gi|333602071|gb|AFDH01000143.1| GENE 100 119119 - 119982 676 287 aa, chain - ## HITS:1 COG:BS_atpG KEGG:ns NR:ns ## COG: BS_atpG COG0224 # Protein_GI_number: 16080735 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, gamma subunit # Organism: Bacillus subtilis # 5 286 4 286 287 312 61.0 4e-85 MAKGIREIKRQIKSKQNTRQITKAMEMVAASKLKRAQNNAEASRPYADKIREVVFSVAAG SKGVQHPMLQVREVKRTGYLVLTSDRGLAGGFNANVLRKALNAIRERHKSTDEYAVFVVG RKGKDFFKRRNIPVFDEVSGLSDSPTFADIKQLASSAVQNFIDGNYDELYVYYNQFHNAI TQTPVEKKLLPLEQPESGSSAVSSYEYEPSAEGVLEVLLPKYAETVIFSAVLESKASEFG ARMTAMGSATKNATKMIAELTLSYNRARQAAITQEISEIVAGANALN >gi|333602071|gb|AFDH01000143.1| GENE 101 120031 - 121545 1121 504 aa, chain - ## HITS:1 COG:BH3756 KEGG:ns NR:ns ## COG: BH3756 COG0056 # Protein_GI_number: 15616318 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, alpha subunit # Organism: Bacillus halodurans # 1 504 1 502 502 757 75.0 0 MSIRPDEISTLIKQQIENYTADLQVVEVGTVITIGDGIARVHGLENVMAGELLEFANGVV GMAQNLEENNVGIIILGPYSDIREGDQVKRTGRIMQVPVGEALLGRVVNALGMPIDGKGP IEASGYRPVESAAPGVMARKSVHEPMQTGIKAIDALVPIGRGQRELIIGDRQTGKTAIAI DTIINQKGNGVKCIYVAIGQKQSTVSNVVDTLRRNGALDYTIVVTASASEPAPLLFLAPY SGCAMGEYFMYKGEHVLIVYDDLSKQAAAYRELSLLLRRPPGREAYPGDVFYLHSRLLER AAKLNDELGGGSITALPFIETQASDVSAYIPTNVISITDGQIFLESDLFYSGQRPAINVG ISVSRVGSSAQVKAMKKVAGTLKTDLAQYRELAAFSQFGSDLDKATVSRLNRGERTLEIL KQGINEPMPFEKQVISIYAATKGFLDELPVKDITRYEKEFLAYLDANKPEIASSIRDTKD LTSDTEKALVAAIETFLKGFSVSE >gi|333602071|gb|AFDH01000143.1| GENE 102 121562 - 122110 355 182 aa, chain - ## HITS:1 COG:BS_atpH KEGG:ns NR:ns ## COG: BS_atpH COG0712 # Protein_GI_number: 16080737 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) # Organism: Bacillus subtilis # 1 176 1 176 181 125 39.0 3e-29 MSDIVVAKRYAKALFEAAKEQNTVAQVETELTEIVQTIQDHAELRSVLDHPNIDVPAKRQ LLSNIFADRISPLVMNTIKLLIDRRRQSLLPIVLSDFVQISNESLGQADATIYTALPLSE VQVKEIADNFSRMTGKQIRVQTVVDPSLLGGITVRIGDRLYDGSLAGKLERLEKSLKQAQ AM >gi|333602071|gb|AFDH01000143.1| GENE 103 122107 - 122592 496 161 aa, chain - ## HITS:1 COG:BH3758 KEGG:ns NR:ns ## COG: BH3758 COG0711 # Protein_GI_number: 15616320 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit b # Organism: Bacillus halodurans # 4 158 5 159 162 117 47.0 1e-26 MSWNWESFVFALVAFGILYWVLSKYAFGPLLATMEERRKLIADQMNSADASRVQAEQMLE EQKQVIQEARKEAYQMIEQAKLTSSKQAEEIVDKAKGEADRVKEEAVREIESEKNKAVAA LRGQVSAMSVMIASKIIEKQVDEKSQEELVNHYLNEVGGSK >gi|333602071|gb|AFDH01000143.1| GENE 104 122703 - 122915 269 70 aa, chain - ## HITS:1 COG:SA1910 KEGG:ns NR:ns ## COG: SA1910 COG0636 # Protein_GI_number: 15927682 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K # Organism: Staphylococcus aureus N315 # 1 68 1 68 70 68 72.0 2e-12 MEFLAAALAIGLGALGAGIGNGLIVSKTVEGIARQPELRGTLQTTMFIGVGIVEVVPIIG VVLGFLIFFK >gi|333602071|gb|AFDH01000143.1| GENE 105 123022 - 123801 734 259 aa, chain - ## HITS:1 COG:BS_atpB KEGG:ns NR:ns ## COG: BS_atpB COG0356 # Protein_GI_number: 16080740 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit a # Organism: Bacillus subtilis # 12 255 12 242 244 177 43.0 2e-44 MHEFPVLHFENGIDIDISTFLAIIVSCVVVLVLALLSVRNLSVDKPSKLQNFMEWVVEFV HNTIASTMPLSKAKSYISLGLTLIMFIFVSNLLGLPFGIVTDHHNGFTLFGQQVLTDARI HELEAAGKHASVAWWKSPTADLSVTSALALMVFVMTNTLGLTQNTKHYLKHYFEPFWFFL PLNIIKELSKPLTLALRLFANIFAGEVLISTIMMLGVVGIPLLAVWQGFSIFVGAIQAFL FTILTMVYISQATVHHEDH >gi|333602071|gb|AFDH01000143.1| GENE 106 123828 - 124196 242 122 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_5825 NR:ns ## KEGG: Pjdr2_5825 # Name: not_defined # Def: ATP synthase I # Organism: Paenibacillus # Pathway: not_defined # 1 118 1 120 136 69 34.0 3e-11 MNDLLKKAMRIALLLLAACLLVWALVPSVRTVVAGLSVGAVASGINALLLQRRVDLIGKT VAERGAQRMSLGFLSRLATVLLAVMIALKFPQHLDIASTIIGCFLVPFILLLVGILSRPH KP >gi|333602071|gb|AFDH01000143.1| GENE 107 124189 - 124422 238 77 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|167463127|ref|ZP_02328216.1| ## NR: gi|167463127|ref|ZP_02328216.1| hypothetical protein Plarl_11291 [Paenibacillus larvae subsp. larvae BRL-230010] # 1 77 1 77 77 85 54.0 1e-15 MKNKGNRDNPWRAAGLVGALGLDIAICTLLGYFAANFAVQRFGGPRSWIVAGVMLGLFAG IASVIMLLKKFLEEPDE >gi|333602071|gb|AFDH01000143.1| GENE 108 124620 - 125756 925 378 aa, chain - ## HITS:1 COG:BS_yvyH KEGG:ns NR:ns ## COG: BS_yvyH COG0381 # Protein_GI_number: 16080619 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine 2-epimerase # Organism: Bacillus subtilis # 1 378 1 377 380 478 61.0 1e-134 MKRLKVITIFGTRPEAIKMAPLILELQKHPEQIESLVAVTAQHRQMLDQVLELFNIQPDF DLNVMKDRQTLNEVTIRVLQGLEPVFREAKPDLILVHGDTLTTFLASYAAFLQQIKVGHV EAGLRTWNKMSPYPEEMNRQLTGVLADLHFAPTQLSAGNLRKENKSEDTIYVTGNTVTDV FQYTVKKDFHHPVLDWAEGKRLILMTAHRREAQGEPHRQIFNAVKRIADEFEDVAIVYPV HPSPAVKEPAYEILGNHPRIKLIDPLDVFEFHNIYPHTYMILTDSGGMQEEAPSFGIPTL VLRDTTERPEGVETGNLEMVGTDGEKVYERARALLTDPQTYDRMKDAVNPYGDGQASRRI VQGILHHFGYKTEKPDSF >gi|333602071|gb|AFDH01000143.1| GENE 109 125781 - 126410 635 209 aa, chain - ## HITS:1 COG:BS_upp KEGG:ns NR:ns ## COG: BS_upp COG0035 # Protein_GI_number: 16080742 # Func_class: F Nucleotide transport and metabolism # Function: Uracil phosphoribosyltransferase # Organism: Bacillus subtilis # 1 209 1 209 209 321 72.0 7e-88 MSKVFICDHPLIQHKLTYIRDVNTKTKDFRELVDEVATLMAYEITRNIQLENIQVKTPVA TADCRIISGRMLGIIPILRAGLGMVDGILNLIPAAKVGHIGLYRDPETLQPVEYYVKLPT DVQERELIVVDPMLATGGSANLAITALKNRGCVQIKLMCLIAAPEGIEAVQKEHPDIDIY VAAIDDYLNDHGYIIPGLGDAGDRLFGTK >gi|333602071|gb|AFDH01000143.1| GENE 110 126650 - 127900 1302 416 aa, chain - ## HITS:1 COG:BS_glyA KEGG:ns NR:ns ## COG: BS_glyA COG0112 # Protein_GI_number: 16080743 # Func_class: E Amino acid transport and metabolism # Function: Glycine/serine hydroxymethyltransferase # Organism: Bacillus subtilis # 2 416 1 415 415 607 71.0 1e-173 MVEFLRKQDPKIVEAMNLELGRQRDKIELIASENFVSQAVLEAMGTVLTNKYAEGYPSKR YYGGCEYVDIVEDIARDRAKELFGAEHANVQPHSGAQANMAVYLAALKPGDTVLGMNLAH GGHLTHGSPVNASGILYNFVAYGVSEQDSRIDYDDVRKAAFKHRPRMIVAGASAYPRIID FEKLGQIADEVGALFMVDMAHIAGLVAAGLHPNPVPHAHFVTTTTHKTLRGPRGGLILCR KPWAAAIDKAVFPGSQGGPLMHIIAAKAVALGEALQADFKTYGKNVIDNAKALAEGLTAE GINLVSGGTDNHLILIDLRSLNITGKDAEHLLDEVGVTVNKNAIPFDPTSPFVTSGIRMG TPAATSRGMDTEAMKQIAKIIALTLKNPSDSAVHEQARGLVKEVTSKFPLYTGLEY >gi|333602071|gb|AFDH01000143.1| GENE 111 128004 - 128663 535 219 aa, chain - ## HITS:1 COG:BS_ywlG KEGG:ns NR:ns ## COG: BS_ywlG COG4475 # Protein_GI_number: 16080744 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 29 187 21 178 180 174 59.0 1e-43 MNDGEKAWLDGIGPAVEANFRALIEAGGLKRGQIVVFGTSTSEVRGQRIGTSGTPEAAER IFAAAVRVAEEHGLRLAFQCCEHLNRALVVEEALLEQDSRLEPVNVVPVPKAGGSMAAHA YRHLVRACVVEEIAAHAGIDIGDTLIGMHLRRVAVPVRPPVKRVGEAHVTMAYTRPKLIG GQRAVYEAASESPGIPVLVGAVAPARTSPGSAADSGACE >gi|333602071|gb|AFDH01000143.1| GENE 112 128693 - 129151 536 152 aa, chain - ## HITS:1 COG:BS_ywlF KEGG:ns NR:ns ## COG: BS_ywlF COG0698 # Protein_GI_number: 16080745 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose 5-phosphate isomerase RpiB # Organism: Bacillus subtilis # 1 148 1 148 149 190 61.0 9e-49 MKIAIGADHAGYRLKDVIVPYLESLGHEVKDVGCNCEQSVDYPDYAVPVCDMVLNGQADK GILICGTGIGMTIAANKMPGIRCALVHDMFSAKATREHNDTNVLAMGERVIGPGVAQEIV KIWIETEFSHGERHENRLNKVKLLEEKNTIHP >gi|333602071|gb|AFDH01000143.1| GENE 113 129499 - 130080 407 193 aa, chain - ## HITS:1 COG:BS_ywlE KEGG:ns NR:ns ## COG: BS_ywlE COG0394 # Protein_GI_number: 16080746 # Func_class: T Signal transduction mechanisms # Function: Protein-tyrosine-phosphatase # Organism: Bacillus subtilis # 4 193 3 149 150 103 33.0 2e-22 MKQILFVCTGNTCRSPLAEGILRHMAQQDNLEVHIRSAGVFASDGSPISRQSSSVLREKG CEASISSSLLRSADVDWADLILTMTQDHKRAVIQRFPQAADKTHTLKEFVEDDPKVVTAA AEWEKLIAEVQVKHALSEEITIEERTRLIHLEKQLPDYDISDPYGGSLELYRHTAEEIEE ALVKLVQKLKESR >gi|333602071|gb|AFDH01000143.1| GENE 114 130165 - 130737 723 190 aa, chain - ## HITS:1 COG:BS_ywlD KEGG:ns NR:ns ## COG: BS_ywlD COG1971 # Protein_GI_number: 16080747 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Bacillus subtilis # 7 190 1 183 185 124 50.0 9e-29 MAALAGVSPFVWGQLVTIFIMAIALGFDAFSLGIGIGMRGIRLLHILKISIVIGLFHILM PLLGMYAGHYLGSLLGQVAVAAGGGLLILLGSHMIYSSFRGEDSNAFDHRTFWGMVLFAL SVSVDSFSVGVSLGIFATDVVLTVLLFGLLGGGMSILGLMLGRHVGSWIGEYGEALGGVI LLLFGLKFLL >gi|333602071|gb|AFDH01000143.1| GENE 115 130979 - 132064 971 361 aa, chain - ## HITS:1 COG:BS_ywlC KEGG:ns NR:ns ## COG: BS_ywlC COG0009 # Protein_GI_number: 16080748 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation factor (SUA5) # Organism: Bacillus subtilis # 17 360 11 346 346 328 54.0 1e-89 MTTTKLWQIHDEAGTGTGTRETADKAIAEAAGLLVQGETVAFPTETVYGLGADATNSAAV EGIYRAKGRPSDNPLIVHIADRSQMDAFAEGAPAEPLRRLMDAFWPGPLTVIVPVRAGAV SPLVTAGLSTVGVRIPDHPVALALLRAAGCPVAAPSANSSGRPSPTMAEHVADDLGGRIG GIVDGGPTGVGVESTVVEWASGAVYILRPGGVTAEQLREALSDVPVREPVRTGEPAGTPR APGMKYAHYAPKGSMRVVLGDDPEAVAEWMRRDLDAAKTRGERTGVLTYDERRGLHHADA VISSGRLAEPETIARGLYAALRQFDREGATYILAEGCPDTGIGRAVMNRLLKAAGQEVIR V >gi|333602071|gb|AFDH01000143.1| GENE 116 132094 - 132804 716 236 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_5840 NR:ns ## KEGG: Pjdr2_5840 # Name: not_defined # Def: stage II sporulation protein R # Organism: Paenibacillus # Pathway: not_defined # 4 235 11 250 250 219 46.0 9e-56 MVIRKSYKHLFYTFFALAIMMMSWEGTRSNAALAEGAIPDQSIRLRILANSDKPEDQAIK RLVRDAIVAQMNEWVTGPHSIDEARQIVRQNLPVLEKVVRDTLTSRGLGGLPYTVELGQV PFPTKMYGNRVYPAGDYEALRVSLGEGKGQNWWCVLFPPLCFVDGVSGEAVAQAAPAEDG GEGPGEAKTAGMQKKTADAPAEGSAAAATAGGDTEVKFFLWELLQGIIGFFLNLFR >gi|333602071|gb|AFDH01000143.1| GENE 117 133470 - 134372 176 300 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|225082709|ref|YP_002653927.1| protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific [marine gamma proteobacterium HTCC2148] # 54 258 62 261 305 72 28 1e-11 MNRLIYQAGMSIREAYTQASSFFKERQIQDAAICAEILLQHVLGLSRTEFFFRMEEPFPA AHAEQWGEVVERKAAGEPVQYITGEQEFYGLTLRVTDAVLIPRPETELLVEEILREGSRL FPQGAPLLADIGTGSGAIPVSLLHARPDWRAAACDLSPEALEVAKGNAERCGVGERIAFC EGDLLLPCVERGLPVDILVSNPPYIPAGDSPSLQPEVRDYEPHLALFGGEDGLDLYRRLA GQIPLLPKQPRLVGLEVGIHQAEAVADLLRAAGEWSEIRFVKDLAGIDRHVIAIQDPSEA >gi|333602071|gb|AFDH01000143.1| GENE 118 134380 - 135450 1150 356 aa, chain - ## HITS:1 COG:BS_prfA KEGG:ns NR:ns ## COG: BS_prfA COG0216 # Protein_GI_number: 16080754 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor A # Organism: Bacillus subtilis # 1 355 1 355 356 447 67.0 1e-125 MLDRLQALADRYEKLSELLCDPDVTSDTKKLREFSKEQSDLQEAYDAYVEYKDVLEQLDA AKAMQAEKLDDEMRDLVKMEIEELSGRKDELEERLTVLMLPKDPNDDKNVIVEIRGAAGG DEAALFAGDLYRMYSKFADAQGWKTEVLEANLNDLGGFKEIIFMINGKGAYSKMKYESGA HRVQRIPVTESGGRIHTSTSTVGVMPEMEEIDIEIKDSDIRVDTFCSSGAGGQSVNTTKS AVRVLHVPTGIMATCQDGKSQNDNKAKALQVLRARIYDVKRQEEEAKYAGERKSKVGTGD RSERIRTYNFPQSRVTDHRIGLTLHKLDTILNGDMDEIVNALTMTAQAELLEKGEQ >gi|333602071|gb|AFDH01000143.1| GENE 119 135666 - 136766 1329 366 aa, chain - ## HITS:1 COG:BH4051 KEGG:ns NR:ns ## COG: BH4051 COG0012 # Protein_GI_number: 15616613 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted GTPase, probable translation factor # Organism: Bacillus halodurans # 1 366 1 366 366 527 72.0 1e-149 MALKAGIVGLPNVGKSTLFNAITQAGAESANYPFCTIDPNVGVVEVPDERLQKLADIVNP NRIVPTAFEFVDIAGLVKGASKGEGLGNKFLANIREVDAIVHVVRCFVDENITHVSGKVD PISDIETINLELILADLDSVEKRIDRSRKNMKGGNKQYAAEVECFEKIKEALYNDQPARS VELTDEERVLVRDLHLLTMKPVLYAANVSEAEVADGDNNPYVQKVREFAAQEGAEVVAIS AKVESEIAELEGEDKEMFLEELGLQESGLDRLIKAAYKLLGLYTYFTAGVQEVRAWTIRK GTKAPQAAAVIHTDFERGFIRAEVVSYEDLTATGSMNAAKEKGQLRLEGKEYIVQDGDVM HFRFNV >gi|333602071|gb|AFDH01000143.1| GENE 120 137040 - 137495 414 151 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSANREAMGQKQFAKGHFLFILGTCLLSLLLGILYTPIWGGETAFSIQFIAHEIVAEPRG LKLWAYLSIGLGAILLAGLVGLIRPGKACGLSCIVLAGIAGVLVLIQLPPVFLWGMVLPV DAAAWVPILLHGTALFVGLCAAGLLKGLKYK >gi|333602071|gb|AFDH01000143.1| GENE 121 137681 - 139108 1401 475 aa, chain - ## HITS:1 COG:BS_ytnA KEGG:ns NR:ns ## COG: BS_ytnA COG1113 # Protein_GI_number: 16080105 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Bacillus subtilis # 4 456 2 454 463 647 72.0 0 MSKKTQPNELQRGLEQRHITLMSLGAAIGVGLFLGSASAIKLAGPGILLAYALGGLIIFF IMRALGEMAIENPVAGSFSRYARNHISPLFGYLTGWNYWFLWIITCMAEITAVGIYMEYW FPGTPRWLWALGALILMSAINLIAVKAYGEFEFWFALIKIVTIIGMIVIGAGMIFFGLGN GGIAVGFSNLWSHGGFLPNGVTGLLLSFQMVMFAYLGVEMIGVTAGEAQNPEKTLAKAID TVFWRILIFYIGALVVIMSIYPWDEIGKAGSPFVMTFEKIGIPGAAGIINFVVLTAALSS CNSGIFSTGRMLFNLAQQGEAPDSFRKVSKSGVPGKAIVVSAIALLIGVILNYIVPEKVF AWVTSIATFGAVWTWAMILISQMRYRKKLSPDQVRNLKYKMPLAPYTSYISLAFLVLVIV LLGFSEDTRVALIVGPIWLIALVVVYYSRGYHRKNALPEKNSDSAGISINPQSEL >gi|333602071|gb|AFDH01000143.1| GENE 122 139461 - 140687 1150 408 aa, chain + ## HITS:1 COG:BS_yukF KEGG:ns NR:ns ## COG: BS_yukF COG2508 # Protein_GI_number: 16080243 # Func_class: T Signal transduction mechanisms; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Regulator of polyketide synthase expression # Organism: Bacillus subtilis # 1 404 14 416 434 354 45.0 1e-97 MSNELNPFDRSFESLEALADTISEVLGCAITIEDANHRLIAYSTHEAQTDPVRIATIVGR RVPEKVIASLWREGFIQQLMKSEDPVPIKALDDVKLGRRIAISIRNNREVLGYIWVLEDA RLLEEADFLQLKHASRAAKTKLLQLQQQKRKEQEGFEDFFWQLLTGHISSGDAVRQKSDK LGIPLMDCFQVMVVEFDSDISEQRAQQIRYLISTTQRIRIALHIVDRTQLVLLGTSSSRN QFAADSSEFLRLFAQQMKDRFGVSPGQTAIGNIYEDYGLVEKSYREALSVLQVKRQFPQE TKRFVHYRDLGFYRFLPLMAEENRIHAHTNPSLLKLRQYDREHNGNLLHTLEIFLLQDSN VKDAADALHVHTNTLNYRLKRISEIGNIDLKDMDQKVSLYLDLKSEKL >gi|333602071|gb|AFDH01000143.1| GENE 123 140825 - 141958 1478 377 aa, chain + ## HITS:1 COG:BH2329 KEGG:ns NR:ns ## COG: BH2329 COG0686 # Protein_GI_number: 15614892 # Func_class: E Amino acid transport and metabolism # Function: Alanine dehydrogenase # Organism: Bacillus halodurans # 1 377 1 377 378 530 76.0 1e-150 MRIGVPKEIKNNENRVAVTPSGVVAFVKAGHEVLVEKNAGIGSGFTNEEYLTAGASLIDQ AADVWAGADMIMKVKEPLASEYEYFREGLILFTYLHLAAEPELAKALTAKGVTAIAYETV EVNRTLPLLTPMSEVAGRMSAQIGAQFLEKPHGGKGILLAGVPGVQRGKVTVIGGGVVGT NAAKLAVGLGADVTIIDLSPERLRQLDDLFGNQVNTLMSNPLNIAEAVAASDLVIGAVLI PGAKAPKLVSEAMIASMKPGSVVVDVAVDQGGIIETVDKITTHDNPTYVKHGVVHYAVAN MPGAVPRTSTLALTNVTLPYALQIAGKGVLQAVKDNAALQLGVNVAGGSITYEAVARDLG YEYVPVGKALDKISVSS >gi|333602071|gb|AFDH01000143.1| GENE 124 142114 - 143316 971 400 aa, chain + ## HITS:1 COG:BH0520 KEGG:ns NR:ns ## COG: BH0520 COG0787 # Protein_GI_number: 15613083 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Alanine racemase # Organism: Bacillus halodurans # 6 390 5 388 388 322 45.0 9e-88 MHPASYRDTWAEISLDAIEHNARTFKKNLQRDCKLMAVVKADGYGHGAYETARAALRAGA EYLAVALLDEALELRAAGITEPLLVLGYTPPRSVKKAVRAGVTLTVFTADVLEAVGAAAA VSSRTPARIHLKVDTGMTRIGVRTAEEALSFARQAIQTPGVALEGIFTHFATADSADDTF TREQFRRFMDIVDHLSDDGIDIPLRHCCNSAATMQYPDMHLDMVRVGISLYGLLPSVASE RDTHPLKPAMQFKTRLVQVKDVEIGTPVSYGSTFVAERPTRIGTIPAGYADGLSRSLSNR GDMLLHGRRVRIAGRVCMDQTMLDITDVENTEEGDLVTIFGKSGDAFLHVDEIAELMDTI NYEVVCLIGKRVPRVYLHKGKPAASVNNLIGEIPAQDSPS >gi|333602071|gb|AFDH01000143.1| GENE 125 143913 - 144446 489 177 aa, chain + ## HITS:1 COG:BH0033 KEGG:ns NR:ns ## COG: BH0033 COG0590 # Protein_GI_number: 15612596 # Func_class: F Nucleotide transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: Cytosine/adenosine deaminases # Organism: Bacillus halodurans # 14 169 1 156 159 193 60.0 1e-49 METVQFDHDSHNPIQAEHEKWMREAMLEADKAKALMEVPIGAVIVRGGEIIGRGHNLRET SLDPTAHAEIIAIREASEKLGAWRLLDCRLYVTLEPCPMCAGAIVQSRVPQVIYGTPDPK AGCAGTLMNLLQEERFNHCVDVISGVLQPECASQLTDFFRELRRRAKEAKKALPAEE >gi|333602071|gb|AFDH01000143.1| GENE 126 145058 - 145159 61 33 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MVMDLYVSIYISSISNLLAYFLFSPLSSGLFVL >gi|333602071|gb|AFDH01000143.1| GENE 127 145327 - 146211 566 294 aa, chain + ## HITS:1 COG:MA0439 KEGG:ns NR:ns ## COG: MA0439 COG1830 # Protein_GI_number: 20089331 # Func_class: G Carbohydrate transport and metabolism # Function: DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes # Organism: Methanosarcina acetivorans str.C2A # 1 259 4 259 267 167 34.0 2e-41 MSKLLRLSKIFHPKSGRAFMLPVDHGTTYGPLNGISSMPALLRMANRFRLQAIIAHKGAI RRALESSESPWGTEFILHLSASTQMSPDMSNKQIVSTVRHGLQIGAIGLSVHINLGVPQE HEMLRDLGLVCDEAYAWGLPVLAMMNVPEEDLSGGAAATNKIAHAVRIAGELGADLVKVQ TPVTPQRAAEAVAAFNIPVLMAGGSSVGDKLAFFRGIREMLDAGGKGLCIGRNLFEDSRP DDMCRALGDLVHKDCSAEEAYETYLAASSRMPLITKQTDPGIAAVQFDPWEEYA >gi|333602071|gb|AFDH01000143.1| GENE 128 146208 - 146969 579 253 aa, chain + ## HITS:1 COG:PAB0058 KEGG:ns NR:ns ## COG: PAB0058 COG2159 # Protein_GI_number: 14520316 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase of the TIM-barrel fold # Organism: Pyrococcus abyssi # 53 229 49 221 248 117 40.0 3e-26 MIIDGHAHISRQDYSSPERLLDDMKSAGIDKAVLVPGGMLDVRRMTRYITGEEKPILTDP PNDTVLDIIREYPDKFYGICCINPNDGAPAALASLEKAYRDGFKGLKLSPLVHQISLMGD VVKELAALCGDYGIPFYTHLVIQATANTAALGSLAEAFPGTNFVIGHMGFGPLDIDAIEL AARRENVYLETSTGNPLAIQTAVKLAGPDKLMFGSEFPLSDPFVEKVKIDRLSISDADKE TILHHTISRLLGL >gi|333602071|gb|AFDH01000143.1| GENE 129 146997 - 148346 582 449 aa, chain + ## HITS:1 COG:AF1671 KEGG:ns NR:ns ## COG: AF1671 COG1541 # Protein_GI_number: 11499261 # Func_class: H Coenzyme transport and metabolism # Function: Coenzyme F390 synthetase # Organism: Archaeoglobus fulgidus # 37 447 6 428 433 196 32.0 1e-49 MAVTARSQMELMSGQKAADRFEPHVRWLNSLTERGMSVENLSQAEVDAYHRRALRSLLQF VYETNEFYKQRMDITGLTPEEASNPALFAQLPFLTKEDLRNDPRCIICSPDLAHIHTSTG TTGGKPIFIGHTLNDLYRLDTAPRYPSLMQNTRNTVVGNALPYEMSSSGLSFHRVFQYMQ DCCVLPVGKGGAYSHPDKALECMLAWDMQTLIIAPSYAVTLAEHAQKLGMDLHRDFNLQH LFLTGEGASPALRERIERIWNTPVTTWYGSLEVGLIGIECLEHQGYHLAEGHIYTEIVHP VTGEPQAPGTVGEVVLTTLMRDGMPIIRYKTGDLGCIEEGPCPCGCRLRRLQLRGRMGDQ LALNSGNFSPLYLEQHLLQIGGTGNWYQFIVENGELSILVEASDSSVDRAELLTEIKLRI EASIQQSCDVQVVDYVERDAGKARRVIRL >gi|333602071|gb|AFDH01000143.1| GENE 130 148365 - 149654 1317 429 aa, chain + ## HITS:1 COG:MJ1249 KEGG:ns NR:ns ## COG: MJ1249 COG1465 # Protein_GI_number: 15669434 # Func_class: E Amino acid transport and metabolism # Function: Predicted alternative 3-dehydroquinate synthase # Organism: Methanococcus jannaschii # 156 429 90 361 361 194 41.0 4e-49 MSKALKETPDINPKAPNDSTTQPTEKPAEAKASGTATPVSSLNQAKNKPIAPVRSKYAWF DISSLTAPEQWGAIVQALPHQKFTGVVANEQQVKQLPPTLDKITYVEGTPSPDKLAALNE AYNIIILEPSVIGSSWFRRNREAITCKIGTSVNVTDPESLQLAVAMTHEVSLLIVEFRDD TKIPLEIVLADAQNFGTEVVMKVRDDIEAKVVFGVLECGADGVLIASGDLGQVYAVGEVI TSTGQKGGQPLQKLTIVRTEHVGMGDRACIDLTSYLGLDEGVLLGSFSCGGILACSETHP LPYMPTRPFRINAGSLHTYVLAPDNRTWYLSDLRSGMEVLVVSTSGKARRVSVGRVKIER RPLLYIEARAEDGTTLNVIMQEDWHVRVFGTEGQPINITTLKPGDQVLGYTMDPGRHVGV KVDELIIEQ >gi|333602071|gb|AFDH01000143.1| GENE 131 149720 - 150949 820 409 aa, chain + ## HITS:1 COG:MTH1855 KEGG:ns NR:ns ## COG: MTH1855 COG1541 # Protein_GI_number: 15679843 # Func_class: H Coenzyme transport and metabolism # Function: Coenzyme F390 synthetase # Organism: Methanothermobacter thermautotrophicus # 13 337 32 358 433 150 33.0 5e-36 MSVKFTALMERLEQSPFYRKHLSAEEREIRDISRIGELPLTTKDHLREAGPWNLLAVPPE EVCQYFETFGTTGLPASAWYTVRDLEAGGRQIGDSGLRLRPGDRLLNRFPYALSLPAHLV QQAARQAGACVLPASSRNTMTPYPRIIELLRKLNVTVMTGLPREMEILAATARLHDLGCR EDFPHLRAIGVAGELLAESRRKKIEELWGVPVYNLYGSTETANIAAMCEHGILHVAEDDF FVEVLQEDLSAAVEPGGGKGLAVITTLTHEGSPLLRYLNGDVISLEKVNCPCGRSGRRLT HYGRQLDRLEVAGRILEPADIHDAVYSLPDLPDAWKVTPAQDGLHFTFEWQGKDAGVLTR FASILTERLQLPVVVEPGEPGALFDRRLLVERQVSTKPLYIVKPAEVML >gi|333602071|gb|AFDH01000143.1| GENE 132 151054 - 153210 1646 718 aa, chain - ## HITS:1 COG:RSc1545 KEGG:ns NR:ns ## COG: RSc1545 COG5001 # Protein_GI_number: 17546264 # Func_class: T Signal transduction mechanisms # Function: Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain # Organism: Ralstonia solanacearum # 107 704 155 754 776 292 33.0 1e-78 MRQLRSSPVYRHIIRNGKAYLLTLLVLTIVNNLFSVGQDHMIKVFIFLTTVLSAVFLRKS VVLQHILASIAYITLFTLLHNIDYFKLPSIMYTLLLLYAFLLPGLWVPTIVGAGFLLFLL TYSSTVQFDYLRANLVGVVFNTVVYAALSYFFRQMIIERDRLKESENRYRSLIEICPEPI VVQQKGKLVYANPAAVQSLGAEDVNKLLGRSALRFLHPESRKNALEHVNEVLEKGASARM EQRYVRLDGQVRSCELVLVATNYGGKPACMSIGKDITERKKAEEKINHMAYHDTLTGLPN RSYLNECLYMAIERAGQTGSQLAVLFLDLDRFKNINDTVGHIYGDLLLRQVAERLQACLG TSDTVFRHSGDEFVILLEGVTEEGVRVQAQTVLDQFKQPFQLHGHEVYTTTSIGISIYPQ DGMDRDVLIKHADMAMYLSKENGKNNYQFYRVHNNRLARKLKLENGLRRALEKQLFTLHY QPQINLASGEIVGMEALIRWMDPELGVVTPGEFIPIAEETGLIVPIGKWVLHTACHQYKQ WREAGLPEIRLAVNISVRQFQDKQLVSTIQSVLEEFDMNPAHLELEITESIMQNLDQSLV ILTALKKIGVKLSIDDFGTGYSSLFLLDKLPIDHIKIDRTFIEEITFNANTEAIVRTIID MGRHLKFQLIGEGIEHERQIHFLQEHQCTIGQGFFISPPLPSEKAGELLSRKQPFVQV >gi|333602071|gb|AFDH01000143.1| GENE 133 153407 - 155395 1903 662 aa, chain - ## HITS:1 COG:no KEGG:Dred_3110 NR:ns ## KEGG: Dred_3110 # Name: not_defined # Def: hypothetical protein # Organism: D.reducens # Pathway: not_defined # 66 651 43 653 672 460 42.0 1e-127 MTQTTDSRKKESQSRTYPRKGMGLISAFSFLLLISLSWWAWSAWKGTDTVKPGQSQSVKK VASIKAPESEYDVIVAGTDPEGITAAVSAARNGQKTLLVENRDRDVLGGLFTEGWLNSLD NSFAPNEEGKSDAGKFLNEGIFLEWRKGIEGTSFDVTTAANAFYDLVRKEKKIDLLMHAK SFTPMVNGSQTVTGLNITTADGKEHKVNARAVIDATQDGDVAAAAGVPFTIGRQDLGDDK SLMAVTLVFRLKGMTEEIWQQMKKNGENDPHLLRGMGADAMSGWGYSAMWDYKSTNPERV RMRGLNIGRQNDGSILINALQIFGVNPLDPASVKEGMEIGRAELPHVLDYMKKEFPELAP LELDGSAPELYVRETRHMIGEYRLTMVDALDNRDQWDKIAYGSYNLDIQSTDAKYRGDIV LKPSQYAIPFRALVPQKINGLLVVGRSASFDSLPHGSARTVPVGMASGQAAGAAAAVAAK NKVSFRELSLSKPMVTELQETLVKQGVRLEPYKFAAPTYTKHKAYEGLKAAVSLGIAAGG EKNEFQLDEPSNPRRFANHFNTMKTVLGRTYPKAVSGSADAAVKGLTKPGDIALTWDQAA WTISQAVGAKVRRSESAAYVLEQKLVEPATFEAIENKSKLTNGEAYMLLRDVLKAQAGVV YR >gi|333602071|gb|AFDH01000143.1| GENE 134 155631 - 157178 216 515 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764795|ref|ZP_02171848.1| ribosomal protein L30 [Bacillus selenitireducens MLS10] # 348 511 162 332 336 87 35 3e-16 MRTRTGKMLIGGFLTAALLASGLGGNGYKAAAASQTSPSYKSAFKDTKGHWAEETIRWAY EHKMTDGYADGTFRPDKAVTEPEFLALLLRAYNKVGSGTAAGSQWFDPYYTKAAIYSWPL LKNTTSPYLRGDAARLIAATQGNLLSTKEAVQRLLDQGLSQGKTDGSENGFRPDDALTRA EALKFLQNLLGVQSDLVAVAYSEIPNNSGSAGGAAPGGTVAVLDNSGSNGSPKTESLGAR HFMIEGAAVGDTEADLTKRLGQPARKDTGGSGLTWYIYNTMDYKHYLQAGIKNGQVAALY TVTGNWTEANGVTPAMNEETVRQKMAGAKAVSDSGKGAVSFESGGVNVSFYFDANDSGKL IGMLVQDTSMSAAKSSSGTLASRSADQRIAYEKQTFDLTNAIRVRHGKAPFEWDEPIAST ARKHSEDMAVNGYFDHTNKQGLSPFDRMEKDGLKFRSAAENIAAGYSGPIEVVNGWMNSS GHRKNIMGDTTRLGVGVYFGGSMNVYYTQNFYTPR >gi|333602071|gb|AFDH01000143.1| GENE 135 157363 - 157587 89 74 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MDGRVIASFLPIILRKRSIELFCRCAIIFSIELIYFRVIETWLSLVERLLREQEVAGSNP VVSTIISPMNWLIL >gi|333602071|gb|AFDH01000143.1| GENE 136 157658 - 158527 870 289 aa, chain + ## HITS:1 COG:CC3566 KEGG:ns NR:ns ## COG: CC3566 COG1131 # Protein_GI_number: 16127796 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Caulobacter vibrioides # 1 287 1 289 294 240 45.0 2e-63 MIEIRNLSKQYKNHPALTGVNLEIGQEMFGLLGPNGAGKTTLMRILSTLLEPTEGTVRVG GLNLLSDAEHIRKITGYLPQYFHLYPQLTAYEFLDYVAVMKGIKSARERKSQIGEILQQV NLTDKARAKIKTFSGGMKQRLGIAQALLGDPRVLIVDEPTAGLDPEERVRFRNLLNRSSL SRTVLLSTHIVADIESSCSRVAVLHRGRVAFAGSLAGLQECAEGLVWEAELSEREFAAYE PHEVVTARRTDHGMLCRIVSATPPAENAAAVKPTLEDGYLALIGGDRRA >gi|333602071|gb|AFDH01000143.1| GENE 137 158520 - 160730 1610 736 aa, chain + ## HITS:1 COG:no KEGG:Btus_2086 NR:ns ## KEGG: Btus_2086 # Name: not_defined # Def: hypothetical protein # Organism: B.tusciae # Pathway: not_defined # 1 730 1 706 710 346 32.0 3e-93 MHRWLRAFSLELRLLRSNPVLLVLPVLFGAWMVYSLSGIAPPVSQDLYLYVYDFHKVKHT LTLGAAMLLGILLIRRDTAKTAYEWTAGLPVSPAVLFSVKYAAGLLYLSLFTAAMAVVYV CFALHYGIGRPIMLRELSFFAVQYEWSYMVTLALAMLLAISIRNRIVYLIGFCAWVFGTF FIDQFIIERLGILELRVLKPFHLSGITLDSFYANEAWGPWIKERETWLARWFVLSFTLVL LTVCVTILKWVRPSGTRARWAGALILFTVLSAGSYYTYVGFWTPHFAAYREQLRNAPTES VYNQRAITQFTVSSYKMELAPASSDGLRASVEVSLRPADLPQGDVSFTLHDYFHVEQLLL DNQPVSFTRHGNLVSVESRHFDSSKSSQTLTFNYESKGINWTYGPQQGEQIISFVMDPYL YLPNSAAWYPLPNNGPLYLTDERKKGLFYGGPQPLAQPADFDVTFKGFSNLIYGSITEKQ GAARIQHFEQKGVKHLTFIAGNLIQFSDPKGSLKLQTTPGNRLEADLFWKDMLRMKAYYE ALLQTNLSAVRNIVYLSYGNLISPDSRQSAVAGSSYYINESRNHNLDDYQRIRTTYALLF GDDSYQSSYAEVSKDANGNTDETVKPSIFMEIRAAFLYLYYRDGLQLTEEQIRSVQFSDQ FLPKDRMTGDRGLGQQIKNHILLQVREALDADKTEEVKKVLASFYKKGLSAPDAPFRYPV VTLDDWNREWAKVFGS >gi|333602071|gb|AFDH01000143.1| GENE 138 160727 - 161443 549 238 aa, chain + ## HITS:1 COG:no KEGG:Btus_2085 NR:ns ## KEGG: Btus_2085 # Name: not_defined # Def: hypothetical protein # Organism: B.tusciae # Pathway: not_defined # 1 233 1 224 230 72 27.0 1e-11 MSLWLQDLRGFKSMWGLPPLLYVLMLGCAIWSSDPEQPGNALFYGELAFYPLVVMLCAAL FHRELGGPMEIYATFPQSLTGMAARKGLILLAVCTGYQAAWFTAYQAKFGAVTTLVYSYG PAGKSSIRTLHSFMPLLLQMLPALLFIAVLTLTVMLTVKKLYAGLFAGLALWMLDILSHG SWLPYFTIYTVHIQEQSKEIPDLFLPNRLVLLSAALVLTVILNYTVHDRSRWIVSEEE >gi|333602071|gb|AFDH01000143.1| GENE 139 161487 - 162104 441 205 aa, chain + ## HITS:1 COG:CC2751 KEGG:ns NR:ns ## COG: CC2751 COG1595 # Protein_GI_number: 16126983 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog # Organism: Caulobacter vibrioides # 4 177 9 179 186 74 31.0 1e-13 MLTDEELAQAMARGDQAAFEAFVHRYHAPLQHYLERTLHDPRKAEDLVQEVFVRLLKQLQ QQKIPDHIRPWMYRVALNLCRDYWKSLAYRNEQQLTAEPPEAQDTQPSVVEIYERQEARK EIIGALRSLPEVQKEIVILRFFHDLKLQEITEVLQIPLSTTKTHLYSGLRKLKALLGPKA GSLTDTGGGRKENRGKPTKEGTPYV >gi|333602071|gb|AFDH01000143.1| GENE 140 162097 - 162933 666 278 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_5591 NR:ns ## KEGG: GYMC10_5591 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 229 1 233 280 100 30.0 7e-20 MYEPDDKELDQLEKDTAVLLNGYLVKTPDRIDTANLLGRLQSHFDAIRENSPGTTRPEHS ADLRPSLWKLCRHQLFMYNKWFWLLSLLLFAMLLLLNSPYTIAGSLPGRSSYSLAFPLLL VCGFLYQYRSWNEGMRMIESVTPYPPALLMFSRLIVLLVTNAVLGLIGSLYTFATMSYSR SWMTLPFLFDWIAPLLLVTGLTAYFMMKRGMLSAIMAALTGWGVELFMEEWLRRELTGPD WNRALILQAVLIAAGVLFLLSAYRKSLRLTSVQGWRSA >gi|333602071|gb|AFDH01000143.1| GENE 141 162930 - 163772 647 280 aa, chain + ## HITS:1 COG:CC3566 KEGG:ns NR:ns ## COG: CC3566 COG1131 # Protein_GI_number: 16127796 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Caulobacter vibrioides # 1 278 1 292 294 117 30.0 2e-26 MIRLNQLVRLYEGHIRLHVDQLTLAPGLILLVGKNGAGKSTLLRLLATADFPDGGEISYL EGTVKEQLPQIRSRIGYVPTDVELHEDMTPIRLMNYMCLLKGADPSQGEQLMRELHLEDV KRKRIGSLSQGMKQRLAIGQALLGSPRYLLLDEPLNYLDSIERKTVIRLLYRHARGSIVL IAAHELNEWQEADQLLWLNAGKPEFYGTPGAWRQVPLGVWQGILPRADACPFDEACVMIR KLVGDHIEWRVFSRECPAPGFVQVPLTTEDAYFIRSRRLL >gi|333602071|gb|AFDH01000143.1| GENE 142 163944 - 164468 559 174 aa, chain + ## HITS:1 COG:mll8140 KEGG:ns NR:ns ## COG: mll8140 COG1595 # Protein_GI_number: 13476734 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog # Organism: Mesorhizobium loti # 2 171 8 178 208 82 28.0 3e-16 MLAGDEEAFREVVRTYRNYVFQIVFSVVRHPKDAEDVMQEVFLKMYTSLPQTEVKGLKAW ISRVAVNKAIDYKRKAYRQRETATDGMEEAMPPPSLSGSDTEDPLLSKELQALVMRKLEE LPENYRDVIIAFYYEDKSYQQIADEQEVTVQTIKSKLYRAKQWIKQHWKEEEFE >gi|333602071|gb|AFDH01000143.1| GENE 143 164465 - 165013 325 182 aa, chain + ## HITS:1 COG:no KEGG:Bcell_0857 NR:ns ## KEGG: Bcell_0857 # Name: not_defined # Def: hypothetical protein # Organism: B.cellulosilyticus # Pathway: not_defined # 1 164 1 137 141 62 27.0 8e-09 MSHRSRDEWKLYIAGEITDDRQRGLWEDHLYECDLCLELYTECLEFLSPALPLPDEADTE RMIDQILARSGSLPVVQEAAPMAAQKQEEPEESLDRTEAKKHRKARSPRRTALTHYAIAA AATFLLMTTGVFGRMTDQFSLVHTEQKKPLATPVSDKLMEQTFAFFDSLHAQKPKGGHPL EP >gi|333602071|gb|AFDH01000143.1| GENE 144 165003 - 166145 871 380 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_0122 NR:ns ## KEGG: Pjdr2_0122 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 4 380 3 360 382 273 42.0 7e-72 MNPRSNTVALLLSFIPGLGHLYLKRIFRAFLYGAGFFGPVALAFLIVVDGHGSKDYAVLL LLFAAACWVVNMVDMFITLGSRPSYPPPGYHEYGNLGHDLGHGHSHGPGPGAVPEFNPAL YEWQRREERRKIILASFIPGLGHYMLGMMYRGLSAMTFFIGAAIVIFFGASLTHTGEFLF FLLALPVLWIYILFDAVRQLEKKQAGMELTDRTFFDDFSESRQEGRRSKTIATVLAVFPG AAHLYLGLQMRGLQIMAGFLFSIYIMDVLRLSLFLFLIPIFWFYSFFDALQLISRQEFGY VEDKPIFKGIKRHQRKIGFLIILVGLYYLTNEVLLDVLRRYYPDWHWPYSISSYFQTFIV ALVLIGGGLTLLFNSPNRKS >gi|333602071|gb|AFDH01000143.1| GENE 145 166247 - 166828 433 193 aa, chain - ## HITS:1 COG:SMc02350 KEGG:ns NR:ns ## COG: SMc02350 COG0526 # Protein_GI_number: 15966330 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Sinorhizobium meliloti # 4 189 8 195 195 128 37.0 6e-30 MGFTLGIGDGARDFRLQGTDGNIYTLDSFRHAKALVVFFTCNHCPYVLGSEEITRRTAEQ FTEQGVAFVAINSNSSQTNPEDSFENMVERMEEKKFPWVYLHDKGQEVALAYGALRTPHF FVFNDRRKLVYTGRGVDNPRETANMTVNNLQEALEAISAGKPVPIPVTNPIGCNVKWEGR DKHWMPEEACDLV >gi|333602071|gb|AFDH01000143.1| GENE 146 167210 - 167359 101 49 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSKPKAQPVGDNVTQEERERYNTPANEPLSGSKKAKKRNHSRQNQGEGS >gi|333602071|gb|AFDH01000143.1| GENE 147 167402 - 167548 101 48 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTRQRTRDKNLQNVAKDLNKSAVNSHDAQQIQQQTNDRRHQDALNHEE >gi|333602071|gb|AFDH01000143.1| GENE 148 167580 - 167930 417 116 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_0080 NR:ns ## KEGG: GYMC10_0080 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 9 115 6 112 113 130 61.0 2e-29 MMIKTEKPSVERDQLAKAWMEELPNTLPESDHARVWPDEADPQAIRIHITNAGRTHYTFD FKCTYVDSREVKVELVDVERDDVHADETSEIIQGLVKDYVRHIHECAQVLQELTHA >gi|333602071|gb|AFDH01000143.1| GENE 149 168311 - 169594 1338 427 aa, chain - ## HITS:1 COG:lin2890 KEGG:ns NR:ns ## COG: lin2890 COG0172 # Protein_GI_number: 16801950 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Seryl-tRNA synthetase # Organism: Listeria innocua # 1 421 1 420 427 591 70.0 1e-169 MFDIKLIRTDIETVQTAMKNRGGKQLEEVTRIAELDVKRRELLQEVEQLKNRRNTVSQEV AMRKKAKEDADDLIAEMKGVGDRIKELDEELRTLEVELNHLLLSIPNVPHESVPVGATEE DNIEIRRNGNVPEFGFEAKAHWDLATDLGILDFEAAGKVTGSRFVFYKGLGARLERALMN FMMDLHSTEHGYEEMLPPYIVNRDSLTGTGQLPKFEEDVFHIENSEYFLIPTAEVPVTNY HRDDILAAEQLPRKFVAFSACFRSEAGAAGRDTRGLIRQHQFNKVELVKLVKPEESYEEL EELTHNAERVLQLLKLPYRVLTLCTGDIGFTSAKTYDLEVWLPSSEAYREISSCSNFEDF QARRANIRFRRDAKAKPEFVHTLNGSGLAIGRTVAAILENYQQEDGSVTVPEVLVPYMNG VTVLRKN >gi|333602071|gb|AFDH01000143.1| GENE 150 169684 - 170256 506 190 aa, chain - ## HITS:1 COG:BH0023 KEGG:ns NR:ns ## COG: BH0023 COG0311 # Protein_GI_number: 15612586 # Func_class: H Coenzyme transport and metabolism # Function: Predicted glutamine amidotransferase involved in pyridoxine biosynthesis # Organism: Bacillus halodurans # 1 190 2 191 196 241 63.0 6e-64 MKVGVLALQGAVAEHIRLIEAVGGEGVVVKRTEQLAELDGLIIPGGESTTIGKLMRRYGF IEAIQDFSDQGKAVFGTCAGLIVIADKIAGQEEAHLGLMDMTVQRNAFGRQQESFETDLP VKGIDRPVRAVFIRAPLIDQVGNGVDVLSEYNGQIVAARQGHLLAASFHPELTDDSSMHA YFLDMIRETR >gi|333602071|gb|AFDH01000143.1| GENE 151 170286 - 171167 874 293 aa, chain - ## HITS:1 COG:BH0022 KEGG:ns NR:ns ## COG: BH0022 COG0214 # Protein_GI_number: 15612585 # Func_class: H Coenzyme transport and metabolism # Function: Pyridoxine biosynthesis enzyme # Organism: Bacillus halodurans # 1 293 2 294 298 450 81.0 1e-126 METGTSRVKRGMAEMQKGGVIMDVMNAEQAKVAEAAGASAVMALERVPSDIRAAGGVARM ADPTVLEEVMKVVSIPVMAKARIGHIVEARVLEALGADYIDESEVLTPADEVFHIDKKDF TVPFVCGAKDIGEALRRINEGASMLRTKGEPGTGNIVEAVRHMRLIQSQIRKIQSLAKDE LYAEAKNLGAPYDLVLYIHENGKLPVVNFAAGGVATPSDAALMMELGADGVFVGSGIFKS DSPEKFARAIVEATTHYKDYKLIAEVSKNLGAPMKGIEISKLHASERMQDRGW >gi|333602071|gb|AFDH01000143.1| GENE 152 171283 - 172575 1057 430 aa, chain - ## HITS:1 COG:BH0021 KEGG:ns NR:ns ## COG: BH0021 COG1686 # Protein_GI_number: 15612584 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanyl-D-alanine carboxypeptidase # Organism: Bacillus halodurans # 11 430 13 443 444 276 38.0 7e-74 MKKFGFWKRKVSLALVFAMLQVSFLHIFAVTALAADGEPELDVSSAILMEASTGQILFEK NADQVLPPASMSKMMTEYLVMEAIHNGKLKWEDTATASKYAASVIGSGQLIAEGETLTIK DLFYAMSIYSSNDASIVLAEKLGGSEEGFAKLMNDKARELGMSDKAQFINATGLSRADIK ENAPKSIQGETVMSAKDVAILARHLVTEHKEVLEYTKVPSKKLRESDKSPMINYNWMLEG NSSNVNFKKYAYQGLDGLKTGHTDEAKYCFTGTAERNGMRLISVVMGAKTEPERFNQTRK VLDYGFTNFEFKTLAKAGTALDAQKTVPITKGVELEAPAVLKNDVAFAVKKGTADTKLET KVDLLAADKLVAPLKKGDKLGTATLSFGKNSETVDLVAENDMEKASWFRMMMRAIKNLFA DLFNGVKGLF >gi|333602071|gb|AFDH01000143.1| GENE 153 172693 - 174150 1014 485 aa, chain - ## HITS:1 COG:BH0020_3 KEGG:ns NR:ns ## COG: BH0020_3 COG0516 # Protein_GI_number: 15612583 # Func_class: F Nucleotide transport and metabolism # Function: IMP dehydrogenase/GMP reductase # Organism: Bacillus halodurans # 204 485 1 282 282 421 73.0 1e-117 MWDAKFAKEGLTFDDVLLVPRKSNVFGKEIDVSTKLAPKVKLNIPLLSSAMDTVTEAALA IAIAREGGIGIIHKNMSIEQQAGEVDRVKRSESGVITNPFHLTPQHHVYDAEALMAKFRI SGVPIVDENKKLVGILTNRDLRFVHDYSIKIEEVMTKENLVTAPVGTTLEQAEGILQQHK IEKLPLVDDSFVLKGLITIKDIEKAIQFPNAGKDEFGRLLCGAAVGVSKDVMERAAALVE AGADVLVVDSAHGHHINILETVRKLRNQYPELPLIAGNVATGDGTRDLIEAGASIVKVGI GPGSICTTRVIAGIGVPQITAIYDCASVAREYNVPIIADGGIKYSGDVVKAIAAGASAVM LGSLFAGTEESPGESEIYQGRRFKVYRGMGSLGAMKEGSKDRYFQENETKLVPEGIEGRV AYKGPLADTIYQLVGGLRSGMGYCGAPDIDTLINDTTFVRISGAGLRESHPHDVQITKEA PNYSM Prediction of potential genes in microbial genomes Time: Sun Jul 17 11:08:45 2011 Seq name: gi|333601932|gb|AFDH01000144.1| Paenibacillus sp. HGF7 contig00153, whole genome shotgun sequence Length of sequence - 62086 bp Number of predicted genes - 59, with homology - 54 Number of transcription units - 24, operones - 11 average op.length - 4.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 40 - 264 74 ## + Term 432 - 469 1.6 + Prom 829 - 888 7.1 2 2 Tu 1 . + CDS 1107 - 1349 64 ## - Term 1471 - 1515 -0.8 3 3 Tu 1 . - CDS 1581 - 1727 213 ## gi|322381729|ref|ZP_08055686.1| RNA binding-like protein + Prom 1779 - 1838 2.0 4 4 Tu 1 . + CDS 1927 - 2412 224 ## GYMC10_4978 hypothetical protein + Term 2419 - 2455 5.1 - Term 2403 - 2447 11.0 5 5 Op 1 . - CDS 2592 - 4487 1665 ## COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 6 5 Op 2 . - CDS 4484 - 5974 1296 ## COG0642 Signal transduction histidine kinase - Prom 6126 - 6185 2.8 - Term 6160 - 6193 4.1 7 6 Tu 1 . - CDS 6194 - 6562 537 ## COG2363 Uncharacterized small membrane protein - Prom 6597 - 6656 2.2 8 7 Tu 1 . - CDS 6684 - 6989 449 ## gi|304405714|ref|ZP_07387372.1| hypothetical protein PaecuDRAFT_2037 - Prom 7043 - 7102 2.3 - Term 7074 - 7132 14.9 9 8 Op 1 18/0.000 - CDS 7141 - 8652 1782 ## COG0477 Permeases of the major facilitator superfamily 10 8 Op 2 5/0.000 - CDS 8627 - 9097 543 ## COG1846 Transcriptional regulators - Prom 9145 - 9204 6.2 11 8 Op 3 2/0.333 - CDS 9379 - 10134 205 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 12 8 Op 4 . - CDS 10164 - 10913 862 ## COG1349 Transcriptional regulators of sugar metabolism 13 8 Op 5 . - CDS 10952 - 11782 941 ## COG3717 5-keto 4-deoxyuronate isomerase - Prom 12010 - 12069 5.1 - Term 12009 - 12061 17.1 14 9 Op 1 . - CDS 12189 - 12653 383 ## GYMC10_3474 hypothetical protein 15 9 Op 2 . - CDS 12743 - 12922 90 ## COG2259 Predicted membrane protein 16 9 Op 3 . - CDS 12922 - 13209 174 ## COG2259 Predicted membrane protein - Prom 13299 - 13358 5.2 - Term 13413 - 13447 3.1 17 10 Op 1 . - CDS 13593 - 14918 365 ## PPSC2_c0600 protein 18 10 Op 2 . - CDS 14938 - 15447 123 ## COG1515 Deoxyinosine 3'endonuclease (endonuclease V) - Prom 15473 - 15532 4.3 19 11 Op 1 . - CDS 15582 - 16346 288 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 20 11 Op 2 . - CDS 16350 - 18608 852 ## pE33L466_0065 ABC transporter permease 21 11 Op 3 11/0.000 - CDS 18653 - 19951 744 ## COG0477 Permeases of the major facilitator superfamily 22 11 Op 4 . - CDS 19944 - 20594 445 ## COG1309 Transcriptional regulator - Prom 20651 - 20710 4.8 23 12 Op 1 . - CDS 20967 - 21338 363 ## ABC1019 hypothetical protein 24 12 Op 2 . - CDS 21364 - 22017 596 ## COG0546 Predicted phosphatases 25 12 Op 3 . - CDS 22051 - 22470 331 ## Pjdr2_5864 hypothetical protein 26 12 Op 4 . - CDS 22503 - 22682 131 ## - Prom 22726 - 22785 6.1 - Term 22757 - 22798 9.3 27 13 Tu 1 . - CDS 22806 - 24707 2182 ## COG1409 Predicted phosphohydrolases - Prom 24862 - 24921 4.0 28 14 Tu 1 . - CDS 24926 - 25528 586 ## COG1954 Glycerol-3-phosphate responsive antiterminator (mRNA-binding) 29 15 Op 1 . - CDS 25672 - 26463 979 ## COG0647 Predicted sugar phosphatases of the HAD superfamily 30 15 Op 2 . - CDS 26498 - 27247 789 ## COG1234 Metal-dependent hydrolases of the beta-lactamase superfamily III 31 15 Op 3 38/0.000 - CDS 27261 - 28073 1196 ## COG0395 ABC-type sugar transport system, permease component 32 15 Op 4 35/0.000 - CDS 28095 - 28991 1141 ## COG1175 ABC-type sugar transport systems, permease components - Term 29030 - 29070 4.8 33 15 Op 5 . - CDS 29144 - 30460 1396 ## COG1653 ABC-type sugar transport system, periplasmic component - Prom 30690 - 30749 6.7 + Prom 30754 - 30813 2.0 34 16 Tu 1 . + CDS 30839 - 31486 303 ## PROTEIN SUPPORTED gi|163738189|ref|ZP_02145605.1| 50S ribosomal protein L19 + Term 31488 - 31533 12.1 - Term 31479 - 31516 3.3 35 17 Op 1 . - CDS 31636 - 32433 594 ## COG0726 Predicted xylanase/chitin deacetylase 36 17 Op 2 1/0.333 - CDS 32448 - 33449 693 ## COG0491 Zn-dependent hydrolases, including glyoxylases 37 17 Op 3 . - CDS 33490 - 34935 1038 ## COG1012 NAD-dependent aldehyde dehydrogenases 38 17 Op 4 . - CDS 34945 - 36906 901 ## GYMC10_3038 hypothetical protein 39 17 Op 5 . - CDS 36934 - 37932 842 ## Ccel_2391 hypothetical protein 40 17 Op 6 . - CDS 37966 - 38979 806 ## BCG9842_B3389 hypothetical protein 41 17 Op 7 . - CDS 39047 - 40291 1226 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase 42 17 Op 8 . - CDS 40359 - 43247 2588 ## COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 43 17 Op 9 . - CDS 43249 - 43968 607 ## COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases 44 17 Op 10 . - CDS 44010 - 44267 360 ## gi|304404896|ref|ZP_07386556.1| conserved hypothetical protein 45 17 Op 11 . - CDS 44298 - 45572 1127 ## COG0475 Kef-type K+ transport systems, membrane components 46 17 Op 12 . - CDS 45594 - 47288 1450 ## PFL_3606 halogenase PrnC 47 17 Op 13 . - CDS 47330 - 47581 449 ## 48 17 Op 14 . - CDS 47597 - 48556 768 ## Dd1591_3651 hypothetical protein - Prom 48580 - 48639 3.1 - Term 48769 - 48798 0.4 49 18 Tu 1 . - CDS 48818 - 50137 1235 ## COG0477 Permeases of the major facilitator superfamily - Prom 50251 - 50310 4.7 + Prom 50066 - 50125 2.6 50 19 Tu 1 . + CDS 50286 - 51749 1028 ## COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs + Term 51892 - 51930 5.1 51 20 Tu 1 . + CDS 52009 - 52887 881 ## BALH_2879 phosphohydrolase + Term 53054 - 53081 -0.8 - Term 52997 - 53045 16.3 52 21 Op 1 . - CDS 53238 - 54146 968 ## COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) - Term 54190 - 54232 6.1 53 21 Op 2 . - CDS 54268 - 54561 338 ## Pjdr2_2705 stress responsive alpha-beta barrel domain protein - Prom 54587 - 54646 4.9 + Prom 54551 - 54610 4.3 54 22 Op 1 6/0.000 + CDS 54760 - 55920 1180 ## COG2718 Uncharacterized conserved protein 55 22 Op 2 . + CDS 55917 - 57347 1444 ## COG2719 Uncharacterized conserved protein + Term 57394 - 57444 3.3 56 23 Tu 1 . + CDS 58067 - 58204 100 ## + Term 58212 - 58262 3.3 - Term 58394 - 58446 11.1 57 24 Op 1 . - CDS 58481 - 59302 905 ## COG1524 Uncharacterized proteins of the AP superfamily 58 24 Op 2 . - CDS 59356 - 60417 1074 ## COG3325 Chitinase 59 24 Op 3 . - CDS 60433 - 62079 1128 ## GYMC10_6047 transglutaminase domain protein Predicted protein(s) >gi|333601932|gb|AFDH01000144.1| GENE 1 40 - 264 74 74 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSKSSIIIPHWIYQIYNYNGVYIHYGEKEAVRQAVAIHSKGKQVYGKAYPSKFQMLWQLE YYKIEKENATYIAV >gi|333601932|gb|AFDH01000144.1| GENE 2 1107 - 1349 64 80 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFLVQEKGKNDAREETEYLVTNTTEPMIVIDSYKDYFILAPVDIKNKTFTPQYKLLKQSK DTPDLPTFEKKKIGPLKPKE >gi|333601932|gb|AFDH01000144.1| GENE 3 1581 - 1727 213 48 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|322381729|ref|ZP_08055686.1| ## NR: gi|322381729|ref|ZP_08055686.1| RNA binding-like protein [Paenibacillus larvae subsp. larvae B-3650] RNA binding-like protein [Paenibacillus larvae subsp. larvae B-3650] # 1 40 1 40 103 67 80.0 3e-10 MMKVEPIELDGNTAIAIEVKLPKTTLLVVTTDKGYIMCGAQFIPYFTG >gi|333601932|gb|AFDH01000144.1| GENE 4 1927 - 2412 224 161 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_4978 NR:ns ## KEGG: GYMC10_4978 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 160 24 182 183 99 40.0 5e-20 MEEETNGLALQKLLQVLNNANFTDFTIEQGIELGKLIALNTPSSGTSSTAASSHAAVSDG SPSSSEKQPASAPASKTGSSAPPAASASNQHRPQVEDQLRKMIKDNTLIRLSVVKGAGIR LSLPCRVLNFDEESGNVTVYHVDEKKVYLFKLNEIDNMSLH >gi|333601932|gb|AFDH01000144.1| GENE 5 2592 - 4487 1665 631 aa, chain - ## HITS:1 COG:RSc1545 KEGG:ns NR:ns ## COG: RSc1545 COG5001 # Protein_GI_number: 17546264 # Func_class: T Signal transduction mechanisms # Function: Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain # Organism: Ralstonia solanacearum # 71 613 216 754 776 301 34.0 3e-81 MIPVLLGGYAAVIVIGSVLLRAYAVWICLGASAVLAGALYTFNKRGNPAASGQEGLTALD NRPVDPPIADESSRLLDTLFDYSPNAISVTDEHGKLTRVSRTMERLLGATNEQLVGNSFG AYVSDEHQDKLKQRYGELRTGTPQLFDIPVLHRSGYRIDLSATGVPLETQGASRRFLFMF QDITERRRADEQFRHMAYYDDMTGLPNRRLFKEQLTEALLLAESHHQRVAVMYVDIDGFK LFNDCFGYDYGDMLLLQVAERFTRCISDNDFIARTEGDEFAFFYTGIQGREQALQLASRL LSVLEEPFMLEQYELHVTASIGISLLSREREDADTLMKHANMAVTRAKENGKSDIQIFNS EMRSVSLQKLQLENDLRRAITNNEFVLHYQPQVEIESGQIVGMEALIRWNHPQKGFIPPG DFIPFAEQSGLIVPISEWVLHEACQQNQTWQDAGLPKVPVSVNLSSRQFLQHNLKAKVDQ VLQHTGLAPQFLELEITESMTMDVEHAIASLLELKQLGVQVSIDDFGTGYSSLSYLKRFP VDRLKIDRSFVRDIMEDPSDAAIVATIISMTRHLNLKVIAEGVETEEQLSFLHRNQCHEV QGYWFSPPLTADKMGSMLRRITCSAGRLKEA >gi|333601932|gb|AFDH01000144.1| GENE 6 4484 - 5974 1296 496 aa, chain - ## HITS:1 COG:BS_ykrQ_3 KEGG:ns NR:ns ## COG: BS_ykrQ_3 COG0642 # Protein_GI_number: 16078417 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Bacillus subtilis # 251 495 13 255 258 220 46.0 6e-57 MYKSFSPDEDNESGFIAPAMIPVFAYAFKEALIGMAVVNQQGDILEVNEVLCRMLGYTRR ELLGMNKDDIAYAAVGTEDWVSRWKELAATKRLQMEKRFRHKDGHWVWTMLNVSLLPGTD GSFVYYVQLQDLTGRKAMEEKLERSRQELGPLFEYNPDIVCIVDMQGHIVSINSTMRQVT GYETDELAGHPCKRFIFPGDLETAAELFEAAKNGRTRTGEFNVSRKDGSWITVEVNTLPI QVGSRVEGIYAIAKDVTRRRETEERLRTSEKLSAVGQLAAGVAHEIRNPLTALKGFTQFL QSGAEGKQEYYEIMMSELNRIDLILSELLMLAKPKASEFAWLNPELVIRHVLALLEAQAI LKNVEFLTNVDGSLSGMMGAENQLKQLFVNLLKNAIEAMPDGGLITIRLQEQADKRICFA IADQGSGIPQDLIDKIGVPFYTTKDQGSGLGMMVSRKIVEEHKGILQIESVMGEGTTVYV RLPINRESGEMEEKRK >gi|333601932|gb|AFDH01000144.1| GENE 7 6194 - 6562 537 122 aa, chain - ## HITS:1 COG:BH3828 KEGG:ns NR:ns ## COG: BH3828 COG2363 # Protein_GI_number: 15616390 # Func_class: S Function unknown # Function: Uncharacterized small membrane protein # Organism: Bacillus halodurans # 1 122 1 121 121 102 51.0 2e-22 MRLFMMLGSINMFLAVALGAFGAHMLKTKISADMLAVYQTGVQYHMIHAVGLIAIGLAAD RLTQNQSLVNASGWAILIGIILFSGSLYVLSLSGIKVLGAITPFGGVAFLAGWVMLAIAA MK >gi|333601932|gb|AFDH01000144.1| GENE 8 6684 - 6989 449 101 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|304405714|ref|ZP_07387372.1| ## NR: gi|304405714|ref|ZP_07387372.1| hypothetical protein PaecuDRAFT_2037 [Paenibacillus curdlanolyticus YK9] hypothetical protein PaecuDRAFT_2037 [Paenibacillus curdlanolyticus YK9] # 1 99 1 98 99 110 57.0 4e-23 MKCSICQWVKIVDMNNEALTQQLFVHGEIEGAALTVGASVVTHSLGLKKFEVVYDKREGI ESARFKVVDIEVDMLQHPFTTRAYLEPQVLIIGQHDVGETE >gi|333601932|gb|AFDH01000144.1| GENE 9 7141 - 8652 1782 503 aa, chain - ## HITS:1 COG:BS_yhcA KEGG:ns NR:ns ## COG: BS_yhcA COG0477 # Protein_GI_number: 16077966 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus subtilis # 17 477 19 507 532 452 50.0 1e-127 MSTEAPQFKRGPIVASLLIGAFVALLSQTFLNVALPGMMKDLQVSENTIQWLSNGYMLVS GVLVPISAFLIERFTTRKLFIAAVGLFTLGTIISGFAPGFELLLTGRLVQAAGAGVLMPL MSIVFLTIFPVEERGKAMGMMGVAMIFAPAIGPTLSGWIMEHYSWRALFYIIIPLSAFAL IFGAVSLKNVTRTSKPRLDILGVILSTLGFGGLLYGFSDAGKDGWDSTIVVTCLTVGAVS LILFIWRELVTEKPILEFRVFKFNMYSLTTVINVIVTMAMFSGMILLPLYLQNIRGFTPF ESGLLLLPGAILMGIMSPITGIIFDKVGARWLSVIGLLIMTVTTYEFSKLTIDTTYTTLI LLYTIRSFGMSMLMMPIQTAGMNQLPQRLNAHGSAMSQTLRNVAGAIGTALLVSLMTNAA KSHGAELVAAGGINPADKVKMAEIAQQSAVYGINHSFVVATWMTVAALVMAFFIRKVKPH VEIKHESVVIENKDVETVTVSSK >gi|333601932|gb|AFDH01000144.1| GENE 10 8627 - 9097 543 156 aa, chain - ## HITS:1 COG:lin1659 KEGG:ns NR:ns ## COG: lin1659 COG1846 # Protein_GI_number: 16800727 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 3 142 2 141 146 77 35.0 1e-14 MEEQDRIHRIFQSYREVNQAFFQVLMKAAQLYGLTPVQLLTLKNLKEHPLIGLGELSEYI LLGTSTTSGIVDRLVKAGLVSRERSETDRRSVTLKLTEKGLEQWNLVERDHMDRLYILAS VSEEDQRQLERINTQILEILQKVRDEETHEYRSTPI >gi|333601932|gb|AFDH01000144.1| GENE 11 9379 - 10134 205 251 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 9 246 4 238 242 83 29 2e-15 MNLFDLSGKKAVVTGAGRGLGATIAIGLAEAGADVALVTNRTPADDVKARVESFGRRAVT IQADVSDRSLLPGVIGQALEGLGGLDILVNNAGIIRRKPAAEHDYQDWQDVLDVNLNSVF TLCQLAGRHMIAQGSGKIINVASMLSFQGGINVPGYTSSKHAVAGLTKALANEWASKGIQ VNGIAPGYMSTDNTEALREDPVRSKQILERIPAARWGTSEDLIGPAVLLASRASDYMNGH ILCVDGGWMVR >gi|333601932|gb|AFDH01000144.1| GENE 12 10164 - 10913 862 249 aa, chain - ## HITS:1 COG:BH2168 KEGG:ns NR:ns ## COG: BH2168 COG1349 # Protein_GI_number: 15614731 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Bacillus halodurans # 1 232 1 236 259 174 43.0 1e-43 MLAAERHRTILEELESRKSVKVSELSDKFQVTEKTIREDLEKLEEKGLLKRTHGGAVPLP DEESLLPQIPNIKHVREKSAIAEYALTFIEPHDIIALDAGSTTLEIARKVKNMPLTVLTN DLLIIRELTAKDQIRLVVPGGYRHHNLLVGTDPDWVKKLNVHKLFLSATGIHPDYGLTIF TEELTRLKRVYMECAKTIYCVADHKKFGKGALITFAGLDEIDYLITDSGIGSETLSKYGE AVNILQAPL >gi|333601932|gb|AFDH01000144.1| GENE 13 10952 - 11782 941 276 aa, chain - ## HITS:1 COG:BH2166 KEGG:ns NR:ns ## COG: BH2166 COG3717 # Protein_GI_number: 15614729 # Func_class: G Carbohydrate transport and metabolism # Function: 5-keto 4-deoxyuronate isomerase # Organism: Bacillus halodurans # 1 276 1 276 276 365 60.0 1e-101 MEIRHTTNPTDFKTFTTERMRNDFLIENLFQEERISMVYTHYDRMVIGGAVPVKETLELE AADTLKTEYFLERREVGFLNIGGDAVITADGESFELGRLDALYVGKGNKKVTIASKDSSN PARVYFCSALAHAEIPSRKISIKEANPNHLGSLETSNERILNQYIHADGIQSCQLMMGVT QLKTGSVWNTMPAHIHDRRMEAYLYFDLKEDARVFHMMGEPSETRHLVVSNEQGVISPSW SIHSGAGTSNYSFIWAMAGENYTFKDMDMVPMNELK >gi|333601932|gb|AFDH01000144.1| GENE 14 12189 - 12653 383 154 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_3474 NR:ns ## KEGG: GYMC10_3474 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 154 1 154 154 269 92.0 3e-71 MSYIVDFKNVSTVGLESSPVAEALAGLRANEARYFMNKYKHEFTVVPAGESQENLDYVNR ILKEERDIAFAAKPLETSRFQVENIRFTYVFYEDGLALNVMYTVDDPKKRAVGFKLSEGM EVPQELEGKFKFARQKSKLAGTIRGSFFVIKGEY >gi|333601932|gb|AFDH01000144.1| GENE 15 12743 - 12922 90 59 aa, chain - ## HITS:1 COG:BH2085 KEGG:ns NR:ns ## COG: BH2085 COG2259 # Protein_GI_number: 15614648 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Bacillus halodurans # 1 44 97 140 140 82 86.0 2e-16 MTGAALSHAFANDYGDYGFHLILPLFYAALNIASWALRPKSRKMCKEVVKLSAAPSYNQ >gi|333601932|gb|AFDH01000144.1| GENE 16 12922 - 13209 174 95 aa, chain - ## HITS:1 COG:BH2085 KEGG:ns NR:ns ## COG: BH2085 COG2259 # Protein_GI_number: 15614648 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Bacillus halodurans # 1 86 1 86 140 111 65.0 3e-25 MSTIIGAKTTAKVVTQHRGKMIAYWTVTLLLAISITLSGIGQLMRYGGNVDLVTDIGFPL YITNILGSWKLLGVVAIIVPGFPRLKNGLTPVFSS >gi|333601932|gb|AFDH01000144.1| GENE 17 13593 - 14918 365 441 aa, chain - ## HITS:1 COG:no KEGG:PPSC2_c0600 NR:ns ## KEGG: PPSC2_c0600 # Name: not_defined # Def: protein # Organism: P.polymyxa_SC2 # Pathway: not_defined # 1 441 1 442 444 681 72.0 0 MLFWKKETQLDRIKNKLGKAMRKDTAFSVFGASSHKYRVYEKLTAKELADWQAKNQVTLP ESYTQFLTRVGNGGAGPYYGIYSIEKATSYTDSALTTKCVLHPGMTKEEWNHLTEPLIND EDISDLEYDAARDRVLGGMLCIGTQGCEYDMYLVIEGKHRGKIVYTSDFYPDRPFFFVYE DNFLDWYERWLDEIILDYDIAWFGSRMPGDENALIQVYQNAPNEEIKSKALDGMFKFKKI SQPTIDFLESVAEQRQNDRTTAIQLICKTSVDAGRGYLLELLHSDRNEDLLHALQILNWY GKSFDLAEFIKVIVQSLDRVHDPETLRHVGYVLESSGAITLQNFAPFLCHTDSNIQTAAI YATRDCNDKSESWEIIQRMFMGGGKEAVKNSIQYWGLIPHEKLLPYYKAAWPEYKSNPNF REKFMACLKELNLPDDYFEKE >gi|333601932|gb|AFDH01000144.1| GENE 18 14938 - 15447 123 169 aa, chain - ## HITS:1 COG:DR2162 KEGG:ns NR:ns ## COG: DR2162 COG1515 # Protein_GI_number: 15807156 # Func_class: L Replication, recombination and repair # Function: Deoxyinosine 3'endonuclease (endonuclease V) # Organism: Deinococcus radiodurans # 1 162 1 160 181 129 38.0 4e-30 MIIAVDVYYEENQAKSVGVIFQSWEDSKPLEVIISYTENPHEYETGFFYKRELPCIQELL NLTDINQIHTIVVDGYVYLNNEKKPGLGHYVYTDFSGKIPVIGVAKSAFHDNEAFVQKIY RGSSSKPLYITSIGMELAVAAEHIQSMYGEYRFPHLLKLLDKQTKEARL >gi|333601932|gb|AFDH01000144.1| GENE 19 15582 - 16346 288 254 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 6 227 1 220 245 115 30 6e-25 MNRKKLITGENIEKVYGQGGDRRKVLDGVSAHINEGEFVSVMGPSGSGKSTLMFAMSGMD RIDGGEVTFDGRDLSALREDELADLRRTQMGFVFQQPTLMKNMNILDNIILPSMRDNRRN VKTITEQARTLMKKVGIAELEKRDITQVSGGQLQRAGICRALMSNPQIIFGDEPTGALNQ EAAQAIMNLLSEINAAGTAIMLVTHDAKIAAKTERIMFMCDGKIVSEMRLPKYSVVDIED RMEKVMAKMREIGI >gi|333601932|gb|AFDH01000144.1| GENE 20 16350 - 18608 852 752 aa, chain - ## HITS:1 COG:no KEGG:pE33L466_0065 NR:ns ## KEGG: pE33L466_0065 # Name: not_defined # Def: ABC transporter permease # Organism: B.cereus_ZK # Pathway: not_defined # 1 751 21 771 772 1072 76.0 0 MIFVAAAAMLVSLSSMLVVNLTGAIDTLMTQAKTPHFLQMHSGELDRARFTAFADQNNKV DEFQVLEFLNVDGSRIVINGNSLVDNVQDNGFSTQSGKFDYLLDLDGNRITVSDGELYVP IGYMKDGTAKTGDTAVIGGKKLTVTGFLRDSQMNSLLASSKRFLVSEHDYAEIQSSGSTE YLIEFRLKDLSMLGAFKDDYTSAGLEANGPTITYPLFKMLNAISDGLMIAVILIVSVLVV AIAFMCIRFTLLATIESDYREIGVMKAIGLRVSDIKKIYLAKYAGIAAFGCMVGFALSFV FRGLLLENIRLYMGGSENSSLALLFGVISVVLVFLAIIGYVSSVLRRFRKISAAEAVRFG ISQDKSAGARRFTLSANRLLNANIFLGVKDVLARTSLYATMLAVLVIAAFIMIVPQNLHN TISSKSFITYMGIGNSDMRLDIQQKDHIAAKEAEVAKVMESDTSISRYAVLTTETFTARR QDGSEERLKIELGDHSIFPVKYSQGRGPAADNEIALSVMNADELGKKVGDVITLVIDGKA RDLTVCGMYSDITNGGKTAKAAITERSEDRVWSVIYAELSDEAVVDGKVREYAERFRFAK VSGIDEYVTQTFGSTISSVGKVSQIAIVMMLVISVLVTVLFMRMLVAKDRYSIAVMKSLG FTNSDLRIQYFARSVVVLIIGIVLGTLLANTLGEILSGAIISSFGASSFTFVVNPLSAYL LCPLMLIGSVLIATMIGTSGAGQITISGNIKE >gi|333601932|gb|AFDH01000144.1| GENE 21 18653 - 19951 744 432 aa, chain - ## HITS:1 COG:MA1161 KEGG:ns NR:ns ## COG: MA1161 COG0477 # Protein_GI_number: 20090027 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Methanosarcina acetivorans str.C2A # 2 427 3 429 443 369 45.0 1e-102 MNNPGGAFGKFILLWSGQLVSAIGSGLTSFGLGVYIYQQTGQASAMALVTLLAFMPSLLL SPVTGVLADRYDRRILMVLGDSLSAIGLVFILICLLNGEAQLWQICVGVTLSSVFSSLLD PSYKATVTDLLTEEQYTKASGFVQMAGSAKYLISPALAGFLLIVSDVKLLLIIDICTFFV TVASTLAVRRGLASKKSEQTGSFMREFKEGWRAVSSNRGVLVLVIMTSVMTFFLGFIETL TMPMILAFSDSSVLGTLETIIALGMLVSSVLIGMVRIKRNFVKILSLSLFWEGIFMAVFG LRENIILLGISGFLFFAMLPFVNTSLDFLVRTNIDKSVQGRAWSLIGLVSQLGFIVAYML SGVLADYVFTPLLIDGGELAGSVGRIIGTGSGRGTGLLIIIAGILLSVASVILYNLKSMK RLEDRGDVCTTG >gi|333601932|gb|AFDH01000144.1| GENE 22 19944 - 20594 445 216 aa, chain - ## HITS:1 COG:MA2782 KEGG:ns NR:ns ## COG: MA2782 COG1309 # Protein_GI_number: 20091605 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Methanosarcina acetivorans str.C2A # 2 195 3 191 201 114 35.0 1e-25 MRVVKEAEERRNEILDAADELFGQKGFDGTSTNDILVKVGIARGTLYHHFKSKEDIMDAL IERYSVNLIGAAQEVALDKSVPVIERILRVVMALNVNSDNGSGKEVMEHIHRPQNALMHQ KIQKVIISGVPPILTPIILEGIEQGLFNTPYPYECMEMVIVYANTIFDEDRADMTNEERT SRVLSFIFNIERLLGAESGSLMSVMQIFGKGRDGNE >gi|333601932|gb|AFDH01000144.1| GENE 23 20967 - 21338 363 123 aa, chain - ## HITS:1 COG:no KEGG:ABC1019 NR:ns ## KEGG: ABC1019 # Name: not_defined # Def: hypothetical protein # Organism: B.clausii # Pathway: not_defined # 1 122 1 121 121 166 67.0 3e-40 MTYQKALEAYIAATNTHDFSEVRKLLHPQAVYWFTDKSCTTPEQIRGYFENAWNLIREEV YSVRDVQWVAEGPQSAACIYTYLWEGYHKGEFVSGSGRGTNVFVKDAEGEWKLVHEHLSG AVQ >gi|333601932|gb|AFDH01000144.1| GENE 24 21364 - 22017 596 217 aa, chain - ## HITS:1 COG:BS_yvoE KEGG:ns NR:ns ## COG: BS_yvoE COG0546 # Protein_GI_number: 16080550 # Func_class: R General function prediction only # Function: Predicted phosphatases # Organism: Bacillus subtilis # 3 212 6 213 216 103 33.0 3e-22 MPIQAVLFDFDGTLADTLPLSFDAFRRVFETYENVTLSDEQITAKFGPTEDDIIRLNVSD ASKAPAAIEDYYSFYENHFHARVSMPRDIAHMLEDLSGQGVRMVIITGKSRRALDVSLNK LGIEKFFFSTVSGDEVDRPKPDPEGIFKALKLLGLSKEEAIFVGDSSADIKAGKSAGLWT IGAHWFETVQTALFSPEPDDVLTNVRDLVELVRQTRT >gi|333601932|gb|AFDH01000144.1| GENE 25 22051 - 22470 331 139 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_5864 NR:ns ## KEGG: Pjdr2_5864 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 15 135 15 135 140 65 35.0 8e-10 MIKKWNSTFFGTLGLTLLLSFLHGAGGELLFLSAYKYPAIVENSGLALAALSILYALPVY ACFRTKYWAALAFLLVLSPLGSLLFIFIGGLFFPVAEGDLGAGILGFITTGINLVSVVLG TLLGGLTNLMLHSRRMLNS >gi|333601932|gb|AFDH01000144.1| GENE 26 22503 - 22682 131 59 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLIAVGLLMLLAPGAVWTVKESWKSNDGTEPSDLYILSTRMGGGIFLLIGIAGIVVSWL >gi|333601932|gb|AFDH01000144.1| GENE 27 22806 - 24707 2182 633 aa, chain - ## HITS:1 COG:BS_yvnB KEGG:ns NR:ns ## COG: BS_yvnB COG1409 # Protein_GI_number: 16080557 # Func_class: R General function prediction only # Function: Predicted phosphohydrolases # Organism: Bacillus subtilis # 34 218 148 340 1289 74 26.0 5e-13 MRKSLRKKMAGALTLALAAAPLLLVSPPKAVQAAAVPKLLITELVPDTTNFASYDAFEYI EVYNNSAVQVDLQGYRFKAGSWNAQIAQSYKLGPWETGVVWTRRAEIAPLGKEAFNSYYS LSYASKYVPDSKLHIIENVGGLTNSGTQTVTILDPAGAEAVKATYTADDVAEGKTITYRY PAAGGTAMQKIAGLQAPTPGRLLAGQAPARPKQDNQAPQAPAGVTAIAGGGSAKLAWSAN PEADVFQYNIYQNGTLLYTVPASQHEFTAYSLIGNKPYTFQISAVDLSENESAKTSVTVT PSHQLITQEERAVNPKDSKYQSLWNISSDGPVVPGLKQDLVPQGMAYYQANNWLLTVAYL EDGRPATLTVTDASTNQYVKSIVLYNSDGTPYTGHAGGVAVSRDHVWIASEGALHQLRLS DVTGAQNNGEVSFIGSVPVPVDAAFNTFADGVLWVGEFYEAKSYPTDPSHKLVNRDGVQH YAWTAGYRLDPVTDTIRSDKWNGSADTPAVPDYLLSITEKIQGIAFMQNSIVLSQSYGRG NDSTLYRYNNPLQGPAHATGTVGGTSVPVWFLDGQSAKATNSKLTAVPMTEGIVPVGGDL FVLFESGANKYRYTTTYIMDRVLKINWNQWDQM >gi|333601932|gb|AFDH01000144.1| GENE 28 24926 - 25528 586 200 aa, chain - ## HITS:1 COG:BH1091 KEGG:ns NR:ns ## COG: BH1091 COG1954 # Protein_GI_number: 15613654 # Func_class: K Transcription # Function: Glycerol-3-phosphate responsive antiterminator (mRNA-binding) # Organism: Bacillus halodurans # 17 194 7 183 183 129 34.0 5e-30 MKETTERAQRVAYCLKKKPVITSLMNAEELPGILQTSSNIVFILKSDIFMIEGIVEKIRE AGKLSFVHFDLIEGIGKDKAGVAYMAEKIGIDGIVTTKNNIIAEGKKYGLITVQRLFVFD SVSLDNGIKMTKSSQPDAIEVLPGMVCSRIMKRIRAEVDVPVIAGGLMTDLEDFNAALGS GVIGISTSSKELWRWQDENR >gi|333601932|gb|AFDH01000144.1| GENE 29 25672 - 26463 979 263 aa, chain - ## HITS:1 COG:VNG0719G KEGG:ns NR:ns ## COG: VNG0719G COG0647 # Protein_GI_number: 15789896 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted sugar phosphatases of the HAD superfamily # Organism: Halobacterium sp. NRC-1 # 6 252 31 277 288 232 46.0 5e-61 MDHYAGYIFDLDGTIYLGDHAIEGAVETIHHLQSKGKKLLFLTNKTIESRENYVKKLDKF GVKIGMEQMLNPALVTIRYLQNHYPGEKVYVIGEPILKEEFLENGIRFADTPEETGVVVI SWDRDFHYNHLDFAYQAIKHGAEAIATHPDRTCPMPGGDVPDCGGMIGAIEGTTGKKVTR IMGKPSVMTALAALDILQVEAKDCLMTGDRLETDIRMGAEAGMSTALVLTGITSEADIAS AEFKPTYVVPSVHAIVKQGCSSQ >gi|333601932|gb|AFDH01000144.1| GENE 30 26498 - 27247 789 249 aa, chain - ## HITS:1 COG:MJ1502 KEGG:ns NR:ns ## COG: MJ1502 COG1234 # Protein_GI_number: 15669696 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily III # Organism: Methanococcus jannaschii # 1 228 11 295 324 77 25.0 2e-14 MELILMGTACASSGRDRDNTYLLVRDTSGSTLIDIGGNPLGKLKTLGLSTHEVKRVVFTH VHIDHIYGLPSLLWGMWIDGREDPLEIYCDESEKEWLQNWLELMKLTKWPIAFEISVQSF QWEKPALLWKEGETALSVFPSRHGVAAVGIQVECGGTVFVYSTDTMPNPLIRDMDRIDLL VHESTTAERSLAMHSTLRDIAGYYDWSKIGRGILVHLTDDEPYEDLLKEIPEPVSSKISL GRELERIPL >gi|333601932|gb|AFDH01000144.1| GENE 31 27261 - 28073 1196 270 aa, chain - ## HITS:1 COG:lin0761 KEGG:ns NR:ns ## COG: lin0761 COG0395 # Protein_GI_number: 16799835 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Listeria innocua # 10 270 19 291 291 164 34.0 2e-40 MHQVINRTIVILLAIAFLIPLVWTVFTSFTPSEEIITRANPFAIENPTFINYINAWKTIP FLQYYWNTIVIVVGILAVQLFTVTLAAYAFARLNFVGSGILFIIFLTQIMIPPDILIYPN YTIMKELNLVDTKLAIMLPYWASSFGVFQLRQTFKQIPLDLDEAARMDGCKWWQTLWYVY LPAAKPTYIAFGLISVSTHWSNFMWPLVVTNSVESRPLTVGIAIFAQSFETGAQWGTVTA ATLMVILPLLIGFFVFQRQFVDSFMHSGIK >gi|333601932|gb|AFDH01000144.1| GENE 32 28095 - 28991 1141 298 aa, chain - ## HITS:1 COG:AGpA78 KEGG:ns NR:ns ## COG: AGpA78 COG1175 # Protein_GI_number: 16119287 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 21 298 42 321 323 193 36.0 3e-49 MAQRTATIKSKFNWKENAFAYALLLPSLIFLALFTFYPTLKSIYLSFYSSNFESSTFVGL DQYKSVLQDEVFRKVIKNNILLAVGTVPTSIFLAIYMAIWVNNKLKGNGLLRAAFFYPTI IPMIAIANVWLFIYTPDYGLLDKFLGVFGIESPNWLGSPEWVMYAMMFMVIWKEAGYFMI FYLAGLQSLPKEVYEAAKMEGASPFQVFRKITFPLLMPTTTFVFIIAVTNSFKLVDHLYI MTKGGPDNGSNLLLYHIYETAFSFWDMGKASVLTVILLVILLAVSIFNYAYLDKKIHY >gi|333601932|gb|AFDH01000144.1| GENE 33 29144 - 30460 1396 438 aa, chain - ## HITS:1 COG:STM3557 KEGG:ns NR:ns ## COG: STM3557 COG1653 # Protein_GI_number: 16766843 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Salmonella typhimurium LT2 # 53 438 35 433 438 173 31.0 6e-43 MKKLMVLMIALAMLLSACGGGGGSTASTDNKGSVGDSGKPVELQFYFPVAVGGPITKIID GLAQDFEKENKDIKIKPVYGGSYQDTMTKVATAVQGNNSPDMAVLLSTDLYTLLSMKAIE DLTPRFSKDYFGNFYEAFLGNTKSGDTVWSVPFQRSTIVLYYNKDMFKEAGLDPEKAPKN WTELREAAAKLTKKDASGKVSQWGIEIPSTGYQYWMLQALSLQSGDNIMSNDGKQVFFNK PHVEEALQFYMDLGQKDNVMPNGAIEWATVPSDFISGKTAMMFHTTGNLTKVKTDAKFNF GVAFLPANKQFGSPTGGGNLYVFKNIPEERKKAAVKFIEFLTKPERVAQWSIDTGYVGTT KAAYETDQLKKYIESFPQAKVARDQLEYANSELSTYQNGQITKLFNDNIQAALLGKMTAK EALQKSQEAADGILKNFK >gi|333601932|gb|AFDH01000144.1| GENE 34 30839 - 31486 303 215 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163738189|ref|ZP_02145605.1| 50S ribosomal protein L19 [Phaeobacter gallaeciensis BS107] # 2 199 8 205 213 121 32 1e-26 MFSSEEREALYKIMYTRRDVRTFRSDPISDETVIKLLEAAHHAPSVGFMQPWNFILVTSD EIKERLAWAADKERRALAIHYEGERQDQFLNLKIEGLKQAPLTVCITCDPTRGGSHVLGR NSIPETDMMSVACAIQNLWLAACAEGLAAGWVSFYKKNDIRDILAIPPHIDPLALISIGY TDHYPAQPILETANWEKRRALDGLIYRETWGQRGN >gi|333601932|gb|AFDH01000144.1| GENE 35 31636 - 32433 594 265 aa, chain - ## HITS:1 COG:BH1917 KEGG:ns NR:ns ## COG: BH1917 COG0726 # Protein_GI_number: 15614480 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted xylanase/chitin deacetylase # Organism: Bacillus halodurans # 59 246 76 265 276 149 36.0 4e-36 MEANKIVDWAHLIGVIAEAGLTYASDSNDLKRYGVIKEAAQDMLSHYREPHEDLPRRVPN GENKIYLTFDDGPDPVYTPQILDLLKKYGITCTFFLMGERVREHPHIVKRILDEGHAIGN HTYTHPYMVLLNEKELNEELSRTDEAMRDAVGFAPVLFRPPYGLLNQGDIDLVRARGYEI MMWSEEFEMFDWSFPGVDNMVRLIEEKTEAGSIILLHDGGGNREETVRTVEKVVPLLLER GFHFASDYLEQSRNEHGHEAAGTAR >gi|333601932|gb|AFDH01000144.1| GENE 36 32448 - 33449 693 333 aa, chain - ## HITS:1 COG:AF0534 KEGG:ns NR:ns ## COG: AF0534 COG0491 # Protein_GI_number: 11498145 # Func_class: R General function prediction only # Function: Zn-dependent hydrolases, including glyoxylases # Organism: Archaeoglobus fulgidus # 3 323 1 317 319 123 28.0 4e-28 MELLKQETEDIVSVKLPVGSVLQWLNAYLIRGEDGYTLLDAGMPDEETFGLWQQAWRHLG ISPRDIRSIIITHHHVDHYGLAARLQDVTGASVRMTEACFLQASRIWSADSVYDEEVLEL FTRHGAPGHLLEVTAPELKHYVKSMTAHPDTEFIRAGDKLALGKSIFEAELVSGHAEGHL CLYDKQEQLVFCGDHVIPKMLPNLNFTLGFDENPLSSYFSSLKEHAELPVRKAYPGHMIP FRKYNARAADIAAQYRQRIDDILARMDKPMTAFELCCLVFFVPVNAEQLRFKLFEMLASL NYLQSLNLIETAEAGADGRLYYRRAPAHANRNP >gi|333601932|gb|AFDH01000144.1| GENE 37 33490 - 34935 1038 481 aa, chain - ## HITS:1 COG:BH2312 KEGG:ns NR:ns ## COG: BH2312 COG1012 # Protein_GI_number: 15614875 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Bacillus halodurans # 5 480 10 484 485 682 69.0 0 MTILLKNYISGSWQESSSSVTETVYNPANDGVIAQVPLSTRKDLDQAVQAAKAAFLPWKN TPVQKRARILFKYQQLLVEAWDELAALITRENGKSQQDAYMEVQRGVECVEFAAGIPSLM MGQITPDVGTGVETTMLRYPIGVVGGITPFNFPMMVPCWMFPMAIACGNTFILKPSERTP LLANRLAELFTEAGLPDGVFNIVHGAREVVNGILEHPEIKAVSFVGSQPVAEYVYKTAAQ HGKRVQALAGAKNHSIVMPDADEELAVKSIIESAFGSAGERCMACSVVVLVGGDRDGLKQ KLLAAADRLQIGNGEDKETELGPLIRQSHKDRTLDYLSSGEQEGAVLLRDGRKDGAASGA GYFLGPTVFGEVTPAMKIWQDEIFAPVLSIMQADSLEEAIAIANRSSFANGACIYTGQLG AVRQFREEIDAGMLGVNIGVPAPTALFPFSGYKNSFYGDLHVNGKDGLEFYTRKKVMTVK A >gi|333601932|gb|AFDH01000144.1| GENE 38 34945 - 36906 901 653 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_3038 NR:ns ## KEGG: GYMC10_3038 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 641 8 599 608 475 40.0 1e-132 MKYIGTEQAEASQHHGGLQPVPGVRHYQAIRACRLKPDLEGGPGWTFHNAPMLAFWRQRF YLQYITCPVEENHPPTRTMITSSTDGKEWTEPVIAFPSYVIPTGVYSGPDGADLPSGSLA VMHQRMGFYTAADGRLLTLGFYGISPVLSVMPNDGRGIGRVVREIYPDGSMGPIYFIRLN AHAGWNAGNTGYPSYTESRDEGFVEACRLLLQDRLATIQWWEEDQSEDGFYPLTGYKALS CYPLPGNKVAGIGKNGKYALSEDDGESWTETGEIDGLVTAGSKLWGQQTPDGKYALLYNP NPNNAYRWPLAAAVSEDGLHFDNLRLIGGEVPPRRYTGFYKFYGMNYVRGISAGNGTPEE DAIWVAYSMNKEDIWVARIPVPLEPDFHEDGDAATPPADTDTGGSILEGRVYGLPGSSIE TAQAAAPMPDTGGSGLVSAAEQTCEMPALSSSGLEDFDRWSIYRPKWSEIRLRVDSGLIL SSRDPYDYVKVEKTFTFPAGIQTDVTIGIRPLAIGPAPFTIELTDGRGETAGGLHWSTDG RISVLQEESDVFLQTYEEGTEYECVLSIDPENGRLRISINGIPAGNPFEYRAAKVGTVAF KVGERPFRVSLDTPLDGGDLSIPDEPLLPSAYCIRYVKLQSSRYSNRVQAERR >gi|333601932|gb|AFDH01000144.1| GENE 39 36934 - 37932 842 332 aa, chain - ## HITS:1 COG:no KEGG:Ccel_2391 NR:ns ## KEGG: Ccel_2391 # Name: not_defined # Def: hypothetical protein # Organism: C.cellulolyticum # Pathway: not_defined # 1 322 1 318 324 152 30.0 3e-35 MTYNQSLRPFNDFWMNCVSNTVYSIAVSNDSSYRTAAYLNHYTYQVATDSSFTYLTMDHP LKYQNEVFDTFIREWEPYFFRNPQAIGKEIGELLDSGQLPVVHVDLFHWIPNSLAWKQYH WYHYSLITGYDAERSVYRVLDDDINGFRDFEVPPERLQEAFLSSQTENNPAYQEPPCSLI RLKDRIPPYEFKLSDLSRHAERLIGELDNLQTEHLWEGTPEPDKFEESMTNGLVGVNIIE SRQAGNRLMLRYLLDAGFIREADFQTLDQELEELALGWFKAKNVFIKAKFSLKRRFNRDQ LLTLAVPLLYRERNFWSALLESTGAAALSKES >gi|333601932|gb|AFDH01000144.1| GENE 40 37966 - 38979 806 337 aa, chain - ## HITS:1 COG:no KEGG:BCG9842_B3389 NR:ns ## KEGG: BCG9842_B3389 # Name: not_defined # Def: hypothetical protein # Organism: B.cereus_G9842 # Pathway: not_defined # 4 326 2 322 330 131 30.0 4e-29 MKTGTKVLPVEIPPIHGRMYYAFPLSILGPAGSYMPWMLNNFIQLQAYSLTRTREEQVAE IRFYNADEPGCFSEVLTIVPEAAGKEQDIHRQAVEAIDRGQYVYAYVDKYYVADNPFHGK KHVVQEALIYGYDLEEQTFQILGFNKSRLFASSTVPFADIAKGIVHSPVTDVFLLRARED FNPEFQLDKVIPLLTQYVDSADKHTGLALPERSQLVFGLDVYKSAAESLRCILDREGAVV TNIAYLHILWEHKKVMGVRLQYMQEHGIAVHSGLDIVQEAYKQMEQELFNLRNKLLKYEL TQSARLIEQIIQSLDTMALKEKQVLELWLERLAMIPG >gi|333601932|gb|AFDH01000144.1| GENE 41 39047 - 40291 1226 414 aa, chain - ## HITS:1 COG:MJ1391 KEGG:ns NR:ns ## COG: MJ1391 COG0436 # Protein_GI_number: 15669581 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Methanococcus jannaschii # 4 410 1 413 418 508 61.0 1e-144 MLVLQDYIQKSFANRIGGDKFGKGNEVYKFEKIKRAKAQALKEKPGIPIIDMGLGEPDWM ADKEVVNVLSTEAAKRENRFYSDNGSFEFKEAAAAYMERIYGVKGLDPTTEINHCIGSKP ALAQIPAVFINPGDITLMTVPGYPVIGTHTQWLGGEVVKMPLLEENGYLPDLNALSDEVK KRAKLLYLNYPNNPTGAVATRAFYEEVVRFAKENEIIVVSDEAYAALTFDGEPPLSFLSV PGAKDVGVAIQSLSKAFNMTGWRLGFVAGNELVLKAFSYAKDNHDSGQFLAIQKAGIYCL NHPEITEATAAKYSRRHGLLAEALGSVGFKVRKPKATFYLYAQAPKGIEDGPRFDSAEDF SQYLITEKLISTVPWDDAGAYVRFSVTFEAEGEEEERALIDELKSRLHGLRYIW >gi|333601932|gb|AFDH01000144.1| GENE 42 40359 - 43247 2588 962 aa, chain - ## HITS:1 COG:BS_yhfL KEGG:ns NR:ns ## COG: BS_yhfL COG0318 # Protein_GI_number: 16078091 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II # Organism: Bacillus subtilis # 501 961 3 511 513 168 25.0 5e-41 MTNQLLTQEDVLSIFYNLKGREYVGSKFSKSPRPERHKNFEGPYTRLKTSVFNKTNEDML PKTGLSILEQVLLSSFSVTSVKFYGYQSEMLWSFPSAGGCYPVDVYVIVRSLDGVEPGIY YYSPLNTSLHKIACADSLFLLDEAILPQDQDADYYIMVSAVPWRSCWKYSHRGYRFSFID AGHVLANFQTIFHSLGVNFTTYTACKDQHIKTLLHLDSHEEPVGIIAVKQHETKPRAVQQ AYRGNYQSRCITTFDSGLSAFDWEPIRLYQEKVRQSLQHQQPSEDWTVRHHIPAEWNDYN EMLRLIIERRSSSSYLPVEIPRHDFIRLLEFVNSLGMPIRIFCVVHAVEGMIPGTYEFNG SELKMIKAGDFRARSTQLCFDQEFVHDSSVLFFFAIDKSQVNDKNFYTYQQRLVDMGILA QMIYLKSGELKLGYSAIGGYYDEEAKELFNLGENMDLLYSGTLGKDDVNSAFKVKMDRYY LNKPKDSEEVKGDSPAQNERIIDKLYEAVLKYGPKEAIRYADESYTYHQFWNQVEKTGAW IKQQIPKQYPVGISMKNCPNYLFAYYGLLLEGYIPMLIDHTFTQDEVDNLCSYYNIGSLL TLDGEGRIQVQLREESFDSFDEDEFANVATCRFSSGTTGRPKCLMFTHDAVINAGVNWAK ASGITSADNVQVTALFHNGLAFNTSLLAVFVSGACLFIAKQITPKSIWETVMKENISILV AFPVVYDLLNNSKYCKPEHSLRLCLSSAAPLHHAVKQAFLDKTGMEICDYYGIVEAGPCT FNNGSKEASLGTPVPGVDIRIVNEEGFAVADGESGIIQVRSSSMAKGYYKASFPFVISPD GYYQTTDRGFIEHNHLYINGRSSDMINVAGKKMDPLEVENVLLKLTGVQDVAVVGVMNER KTTEYPVAFVVLDPGVTIDDLIAHCQQYLAPFKLPQKFVTVDSIPRSGVGKIKRKELADS LS >gi|333601932|gb|AFDH01000144.1| GENE 43 43249 - 43968 607 239 aa, chain - ## HITS:1 COG:PA0224 KEGG:ns NR:ns ## COG: PA0224 COG0235 # Protein_GI_number: 15595421 # Func_class: G Carbohydrate transport and metabolism # Function: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases # Organism: Pseudomonas aeruginosa # 6 189 33 217 260 105 32.0 9e-23 MSQFIEEMVYASQILYLEGHNDINNGQISYRDPESGNIWIRKGFLGWEETTPDDFILIDS EGNRLKGEGHIPSEWPLHTETYKARADVNCIIHSHPPYSMIFSATDLDLRPVTHDATPIM NTQRFTLTTNTVTNPNIAAQVAESLGKSNTLLLKNHGLVAAGKTIPETVCWAAVLENACK LQLIAESTGVPYTWTEGHEIKMKSKIIFGATAIREYWAYWCRKADRHFNPHSKNHLVGV >gi|333601932|gb|AFDH01000144.1| GENE 44 44010 - 44267 360 85 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|304404896|ref|ZP_07386556.1| ## NR: gi|304404896|ref|ZP_07386556.1| conserved hypothetical protein [Paenibacillus curdlanolyticus YK9] conserved hypothetical protein [Paenibacillus curdlanolyticus YK9] # 1 85 1 85 87 71 50.0 2e-11 MNIQDKIKQFIMEASDGNVTPEDLERVGDDIGRLGLDSLAKIKIVVLLEEAYDIETEVEE ISPEVLNSISRLAEFIEQEVQKISV >gi|333601932|gb|AFDH01000144.1| GENE 45 44298 - 45572 1127 424 aa, chain - ## HITS:1 COG:CC1500 KEGG:ns NR:ns ## COG: CC1500 COG0475 # Protein_GI_number: 16125747 # Func_class: P Inorganic ion transport and metabolism # Function: Kef-type K+ transport systems, membrane components # Organism: Caulobacter vibrioides # 5 406 64 467 481 216 38.0 6e-56 MHLLLNVIVALILILTSARIMARVAVMLRFPSVIGEMVAGILLGPTCFMYFFPEISKSVF NADVGNAIYILSNFGLCLYMLLVGMEMKGIDRKSFRQAGLLASSGIIPPFLLGGGISLFL YASLAQQQITQLEFFLYMGVALSITSIPMLARILEEEKLLQSRFASLTLLAGSIDDVISW CILAVVIVMVQAKNMFSGISTLLYTVLFVLIVLFVVKPLMERFGAKVQKAGFLSHGGLAL VLLLTLGASFVTEYIGIYAVFGCFILGLAMPRSEVFLNEMNFKIRDITVVFFLPLYFAYS GMKTNLLDLFSADMLFPFLILLLFSILGKYGGCTLYMRKIGFSWREASAVGGLMNARGLM ELVVINIGMTYGIITPKLYAMLVLMALVTTALAMPIYYFSMGTKSRAASAVFPPKVQYRT EDGG >gi|333601932|gb|AFDH01000144.1| GENE 46 45594 - 47288 1450 564 aa, chain - ## HITS:1 COG:no KEGG:PFL_3606 NR:ns ## KEGG: PFL_3606 # Name: prnC # Def: halogenase PrnC # Organism: P.fluorescens # Pathway: Tetracycline biosynthesis [PATH:pfl00253]; Biosynthesis of secondary metabolites [PATH:pfl01110] # 10 547 14 550 567 501 44.0 1e-140 MEKTAGTAAHYDVIVIGAGIAGTILSAILARQQLNVLVIDAATHPRFVIGESMIPATSFM MRIMAERYDVPEIMHCSTLPFVQNHITSNSGTKRNFSFFYHREGEDQNPKESTQLPVPNI PYGPEAHLFRQDTDAYMMAVAIKYGAKVKQKTMISDIDIHEDGVNIKTTANEEFSAKYIV DASGFNSVLAKRLGLREEPSRMKTKSRSIFTHMVGVKPFDEITNKDEHKLPNRIHNGTLH HIFDGGWLWVIPFDNNAKSTSILCSVGLQYDLNRNPDNVSNKKPEEEFADFLEAYPDVKK QFENAKPVREWISSGGRLQYSASKVIGKRFCLLAHASAFIDPLFSRGLAITTETINSLAQ RLIDAVREDDFNEERFEPVSRIIQQSYDTNDRLVSCSYTAFRDFNLWNAWYRVWALGQAF TSLRLTQVLSKFYKERDLQILLDIEKAPFIGSLCVDFAEFQPLFEKVASTVEAVRDHGLS TEEATKRIYGYYEEVQSFIPEQYEFLNPERRFISKMDMLSLYEVVMWGAQQAPDTIRKLY FDIDESFLKGTKEPASNEVPVATV >gi|333601932|gb|AFDH01000144.1| GENE 47 47330 - 47581 449 83 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNPIEHKIREILTQADIAVDQIGSNDDMTTMGLNSLTLIKSMLEIIKFYDLEIDEESVEF YNIKTIQNMVDFVSANVAEKANA >gi|333601932|gb|AFDH01000144.1| GENE 48 47597 - 48556 768 319 aa, chain - ## HITS:1 COG:no KEGG:Dd1591_3651 NR:ns ## KEGG: Dd1591_3651 # Name: not_defined # Def: hypothetical protein # Organism: D.zeae # Pathway: not_defined # 7 310 13 308 312 70 20.0 1e-10 MKIIPRYDEDFFNCVESHYVSYWKAEGIPVEYMFYGALEDTGNVYEHFVAKRDNRWLFHD KKHVLDDIHHFGLTLRQERIETFQEAEPKIIEALDEGKIVFFFIDGYYFKHRTFTYLQKH EPHCMMISQLSHEGGKKWFIQDHSQPDFFDYYPHETVEKAYDDNPTEQFVKEIMIFDIDR ERAANPELDQIKAKFELWVHECRDDFKIYQQTIDFLEVNREDISKVEEELEAYQNAFFFL YSSRLLFSRFLDVMNIETSIRESLNESIQLTDRIRKLITNYKILGKISVPKITEACGKLY EIEPKMIQTLKEELLAQKI >gi|333601932|gb|AFDH01000144.1| GENE 49 48818 - 50137 1235 439 aa, chain - ## HITS:1 COG:BS_ycxA KEGG:ns NR:ns ## COG: BS_ycxA COG0477 # Protein_GI_number: 16077422 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus subtilis # 10 409 9 384 409 104 25.0 3e-22 MLFKEKKYAWFLLAFLWVFGFVGSLGRFVMAYYQKDISETLGVGRSFLGATWSTAIFIGA ISAPLGGWLIDKIGYKKVMIYTAIANLLSLAIVLLFRNPIGYFLGFGLITGIAGIGASAS YVLVANWFKHHRAKALMIIGSAGSLGLAVLTPVLVSNKSWLTWTTVYTVLFIISLAFIPL ILLIVRSNKEAPEEEAPAAPVQDSSSPTNKEPGEEQPPAPAEPVFSLKKMSEGFKSFMVY LTRPVMLVIMFALLTCGISMGTVEMNLMAIHQLAHVSDGMMSSSLSLLGLLELVGGVTFS FLLDYMPRVKALAYLYFFRIAGFAVLFFHFDYSPILFSLIFGATYLGAVPGGILVAGEAL NEGKKQIGLQTGILLLIHQLGGVVAAIAGGLNYDLANDYQFLIAVNVVFSLVASAGYFVL YRKGIGTKKAPVLTGEVGA >gi|333601932|gb|AFDH01000144.1| GENE 50 50286 - 51749 1028 487 aa, chain + ## HITS:1 COG:BH0432 KEGG:ns NR:ns ## COG: BH0432 COG1167 # Protein_GI_number: 15612995 # Func_class: K Transcription; E Amino acid transport and metabolism # Function: Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs # Organism: Bacillus halodurans # 1 484 1 479 482 315 35.0 2e-85 MNMRWKPRPYDHTPIFRQICTYFKEQILKGELSPGTRLPTERELALQLSVNRSTVSAAYE ELRATGLVYSVQGSGTRVSESLWETTVQTAPNWDHYLGRRFFNPNAAITDKIGEAASIPG IVNMIKGELSPDLMPLGLLGELAAQIDYTQAYSYFSDKRGEPSLRAVVSDFMKTRSGISA SPESILVTSGVKHSLQLISNTLLQPGDAVALEGPSYIYAMQVFSSSGIRMFPLPVDEHGL IPDELPRLVHKHNIRMVFTNPTYQNPTGTTLSPARRAKLIDLCEQLRLPLVEDDPYGLLH LSGSPPVPPLKASPEGDKIVIYLGTLSKISTPGMRTGWIVAPPPVIDKLAETKNRMGYSS SHSGERLAQLYMTSPSSVQSLISIREALTARRNTMLSTLQSELSPYVSVFGGNHNAPGGY YVWLKLNLPLEDKQLVDLAVKEGVMLWPGSIYGMKKGFFRLTYASIREHEIVEGIRRIRR VFEKAVL >gi|333601932|gb|AFDH01000144.1| GENE 51 52009 - 52887 881 292 aa, chain + ## HITS:1 COG:no KEGG:BALH_2879 NR:ns ## KEGG: BALH_2879 # Name: not_defined # Def: phosphohydrolase # Organism: B.thuringiensis_AlHakam # Pathway: not_defined # 35 225 75 274 433 91 31.0 4e-17 MPAGPGKLLASLWLLSDLHVTPYDSATSDKLKKALTDLVKPEHPGDALILGGDLTEYGSD NDYKQLKGVLSGFKLPPLYANMGNHDYYDIWIDGKGSFATETQPNGKTDAQSRQRFQAFM KTERPYGKFETGGIPVFLLSQEAYVQEKPDVGEGAWYSDAQLAWLKTELAKLEKHLPVLV MIHQPLPQEGSDGGTHRVIRANELRAILAPYPNVFVFSGHTHRDFTANHYTRHATFHWFS NSTVGRSRSKVLSQGMYIQVYEHEVRVRGREFSNASWIGAADWTVPLKKSAD >gi|333601932|gb|AFDH01000144.1| GENE 52 53238 - 54146 968 302 aa, chain - ## HITS:1 COG:BH1011 KEGG:ns NR:ns ## COG: BH1011 COG0667 # Protein_GI_number: 15613574 # Func_class: C Energy production and conversion # Function: Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) # Organism: Bacillus halodurans # 1 302 1 296 297 351 59.0 9e-97 MKKNRLGQSDLFISEVGLGCMSLGTEEKRAVELVRRALDLGVTFLDTADLYDEGRNEELV GKAVRGRRSEVVLATKVGNRRVPGQEGWTWDPSKAYIKSAVKDSLKRLRTDYIDLYQLHG GTLEDPIDETIEAFEELKEEGLIRHYGISSIRPNVIREYVKRSGIVSVMSQYSILDRRPE EEVLPLLEDKGISLIARGPVARGILTASGEEKAAQGYLDYSPEELPQVRRQLLEAAGPGR DPGHMAIRYALSHPAVAAVIPGASSLEQLAHNAEAAAAVPLSAEELEEIRRISKASRYAQ HR >gi|333601932|gb|AFDH01000144.1| GENE 53 54268 - 54561 338 97 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_2705 NR:ns ## KEGG: Pjdr2_2705 # Name: not_defined # Def: stress responsive alpha-beta barrel domain protein # Organism: Paenibacillus # Pathway: not_defined # 1 97 1 97 97 127 64.0 1e-28 MIDHIVLVKFGESTTQEQLQDVIARFKALKNHLSGVIDLQAGLNFSTNNQGYQLVLSVRF ENQEALEAYGPHPEHQAVAAYIREVGRVDSIVVDIRI >gi|333601932|gb|AFDH01000144.1| GENE 54 54760 - 55920 1180 386 aa, chain + ## HITS:1 COG:BS_yhbH KEGG:ns NR:ns ## COG: BS_yhbH COG2718 # Protein_GI_number: 16077963 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 6 382 9 386 392 507 64.0 1e-143 MTDSSFIVSREDWSLHRKGYQDQTRHQEKVRDAIKQNLPDIVSDESIILSNGKQVVKVPI RSLDEYRFRYNYQKSKHVGQGDGDSQVGDVLGVDPQPSSKGGKGEGAGDKPGEDYYEAEV SFEELQALLFEELELPFLQRKDKKNFAVKEVLFNDIRKKGIMSNIDKKKTILENLRRNAT QGDPGIHGISPDDLRFKTWNEVEKPHSNALILAMMDTSGSMGSFEKFIARSFFFWMTRFL RTKYEHVEIVFIAHHTEAREVTEEEFFTKGESGGTICSSAYQAALDIIDSRYPPEQYNIY PFHFSDGDNLTSDNERCVKLIGQLLERSNMFGYGEVNQYNRSSTLMSAYRNIHHPKFMHY IIREKSEVYKALRSFFTPRTEGGELI >gi|333601932|gb|AFDH01000144.1| GENE 55 55917 - 57347 1444 476 aa, chain + ## HITS:1 COG:BS_spoVR KEGG:ns NR:ns ## COG: BS_spoVR COG2719 # Protein_GI_number: 16078005 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 1 476 1 468 468 635 65.0 0 MTPDEIRQLEHAIAEITEVAEGFGLDFYPMRYEICPADIIYTFGAYGMPTRFSHWSFGKT FHKMKTQYDFGLSKIYELVINSDPCYAFLLDGNSLIQNKLIVAHVLAHCDFFKNNARFSR TNRNMVESMSATAERVRQYEIEYGTQRVEEFLDCVLAVQEHVDPSLTTPGRRKPEEQDDK ENDKLGRNGRPKTGYEDLWDLERQDPEPDEEESRPVRFPPKPEKDVLLFIEENAPHLEDW QRDIMTMMRDEMLYFWPQMETKIMNEGWASYWHQRILRELDLTEEETIEYSKLNSGVVQP SRHTLNPYYLGLKIFEDIEKRWDNPKEEEREKYGRRGGEGRNKIYEVREFDSDTSFIRNY MTKELVEDLDLYVFEKKGPEWKITDKTWKNIRDQLVYSRVNGGFPYLEVYDGDYQRNGEL YLRHSYEGVELDLKYVEKTLPYLYRLWGKPVYLQSVVEDKAVLFSYDGKKSHRKFM >gi|333601932|gb|AFDH01000144.1| GENE 56 58067 - 58204 100 45 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MIGYYSDINYASGNPLATVIPIAIAITGGILLLIGLLTIPRRQKK >gi|333601932|gb|AFDH01000144.1| GENE 57 58481 - 59302 905 273 aa, chain - ## HITS:1 COG:PA3251 KEGG:ns NR:ns ## COG: PA3251 COG1524 # Protein_GI_number: 15598447 # Func_class: R General function prediction only # Function: Uncharacterized proteins of the AP superfamily # Organism: Pseudomonas aeruginosa # 5 233 6 234 269 223 53.0 4e-58 MAKTIVLVLDGLRYDVMLSSMGYLNHLVEKSQAALYKVKSELPSLSRPLYEVLLTGTPSY INGITANHVVRLSRFPSVFHLARQQGLTTAAAAYHWVSELYNSALFDYVADRIQHDESKP IQHGMFYYEDSYPDSHLIGDAEYLRRTYDPDFLYVHPMNIDDAGHKFTSDSARYRGQALH MDGLLAVLLPVWMEQGYQILVTSDHGMNEDGHHGGTGDAERDVGLIAIGDRFTPGVYTDS YLPQLAIAPLICSLLDVPVSSHMSDIPVTGFRK >gi|333601932|gb|AFDH01000144.1| GENE 58 59356 - 60417 1074 353 aa, chain - ## HITS:1 COG:BH0916_1 KEGG:ns NR:ns ## COG: BH0916_1 COG3325 # Protein_GI_number: 15613479 # Func_class: G Carbohydrate transport and metabolism # Function: Chitinase # Organism: Bacillus halodurans # 48 338 135 441 450 224 39.0 1e-58 MSKPYVVAGYVADAGLPDVTGEDLGKLTHLNVAFGHVREDEIRIDHLAHLDELTRFKTVN PELVLLLSVGGWGAGGFSEAASTEEGRRRMAQSAVNILLAHPFDGIDLDWEYPCYSAAGI QSSPEDKRNFTLLLQTIREAIDEQGRKDGRRYLLTIAVGADQYYLDGTEMDQVHRYLDFL QVMTYDMRGGFQVLTGHHTNLYNSTGDLFRISTDTSINLYLGAGVPRDKIVVGAAFYSRQ WEKVPDTANGLHQIAGGSGGYGPDYTTLANDYINKNGYVRYWDEEAKAPYLFNGSSFITY DDEESLQHKCRYVEEKNLAGIMFWEYGCDKTRRLLDSLHQGMHKAVDSASKPF >gi|333601932|gb|AFDH01000144.1| GENE 59 60433 - 62079 1128 548 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_6047 NR:ns ## KEGG: GYMC10_6047 # Name: not_defined # Def: transglutaminase domain protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 3 540 351 865 872 501 50.0 1e-140 MVMTIRNAEEPSGTQDVDMVPPPEREGEALSAVTEEMLRVHQAREQEGAAVRKSFEDTFL GEQDAVKLAGELGLPPERVWDVLRKARGNSREIRDFLRERTAAYGVWPLRLLESMRDKDM LDTFRPTLDDHLLHALKWADAWEEDVFVPYILCPRVHFEMIGPYRRLFEEAFTAEEAAAY REDPSGLVRRFAAEFEVRDDLTNLPGRASAAGSFALKKGDRLSLDILLVAVCRSLGIPAR LHPNNQKPQFRQDGEWINAGWREREESKAQRGTLLLRQPGGDAHPGAAEPQAPGARSDSA ASEESAAAPAPEASYFQNLTVARLEEGLYRTIVFPHGKSDLYAEPLELEAGSYRLTTGTR LKDGTVLARFRYFTVVPGRQTKLTPTFRTAPSDVPVLGSVDGNTVFGSLEENGETRTLED LAGGRAVLAAWIEPEREPSKHLIRELTELSNLYAKAEAAVIMVVGDDRRTVSFDPARYGE LPAGTHFVRDEGYVSLDEFNAKRPLPDAGFPHVFVVDRKGQIRHTQSGYKVGSAREALQI FENLCEND Prediction of potential genes in microbial genomes Time: Sun Jul 17 11:10:59 2011 Seq name: gi|333601841|gb|AFDH01000145.1| Paenibacillus sp. HGF7 contig00048, whole genome shotgun sequence Length of sequence - 34342 bp Number of predicted genes - 36, with homology - 28 Number of transcription units - 13, operones - 6 average op.length - 4.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 36 - 80 10.1 1 1 Tu 1 . - CDS 235 - 1116 809 ## GYMC10_4387 oxidoreductase domain protein - Term 1217 - 1273 3.0 2 2 Op 1 16/0.000 - CDS 1399 - 1884 510 ## COG0262 Dihydrofolate reductase 3 2 Op 2 . - CDS 1995 - 2789 747 ## COG0207 Thymidylate synthase - Prom 2839 - 2898 5.9 - Term 2929 - 2973 4.4 4 3 Tu 1 . - CDS 3013 - 3870 1035 ## COG1082 Sugar phosphate isomerases/epimerases - Prom 3908 - 3967 4.4 + Prom 4002 - 4061 2.5 5 4 Op 1 . + CDS 4166 - 4381 265 ## 6 4 Op 2 . + CDS 4391 - 4639 256 ## + Term 4717 - 4759 6.2 - Term 4705 - 4745 9.6 7 5 Tu 1 . - CDS 4774 - 5844 1295 ## GYMC10_0082 hypothetical protein - Prom 5885 - 5944 7.6 8 6 Tu 1 . - CDS 6359 - 6475 186 ## - Prom 6520 - 6579 2.8 + Prom 6543 - 6602 4.7 9 7 Tu 1 . + CDS 6664 - 7512 1012 ## COG1876 D-alanyl-D-alanine carboxypeptidase + Term 7559 - 7606 10.6 - Term 7552 - 7590 7.5 10 8 Op 1 13/0.000 - CDS 7792 - 8544 569 ## COG1556 Uncharacterized conserved protein 11 8 Op 2 17/0.000 - CDS 8537 - 10048 1269 ## COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain 12 8 Op 3 . - CDS 10035 - 10778 706 ## COG0247 Fe-S oxidoreductase - Prom 10810 - 10869 1.9 - Term 10838 - 10891 1.1 13 9 Tu 1 . - CDS 10907 - 11668 735 ## COG1349 Transcriptional regulators of sugar metabolism - Prom 11764 - 11823 3.4 - Term 11877 - 11927 -0.6 14 10 Tu 1 . - CDS 12084 - 14153 2175 ## COG3347 Uncharacterized conserved protein - Prom 14215 - 14274 12.1 15 11 Op 1 . - CDS 14767 - 15615 993 ## COG1805 Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrB 16 11 Op 2 . - CDS 15628 - 16524 761 ## COG5377 Phage-related protein, predicted endonuclease 17 11 Op 3 . - CDS 16568 - 17572 747 ## Caci_6382 hypothetical protein 18 11 Op 4 . - CDS 17670 - 18308 573 ## COG2207 AraC-type DNA-binding domain-containing proteins - Prom 18525 - 18584 7.4 19 12 Op 1 . + CDS 18971 - 19531 494 ## COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases) 20 12 Op 2 . + CDS 19620 - 19838 121 ## - Term 19904 - 19966 7.8 21 13 Op 1 . - CDS 19975 - 20760 791 ## COG1805 Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrB 22 13 Op 2 . - CDS 20761 - 22491 1731 ## Acid345_0425 hypothetical protein 23 13 Op 3 . - CDS 22532 - 22795 376 ## 24 13 Op 4 11/0.000 - CDS 22810 - 23559 333 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 25 13 Op 5 . - CDS 23568 - 24836 952 ## COG0304 3-oxoacyl-(acyl-carrier-protein) synthase 26 13 Op 6 . - CDS 24873 - 25724 729 ## AMED_4043 3-oxoacyl-[acyl-carrier-protein] synthase II 27 13 Op 7 . - CDS 25738 - 26985 766 ## COG0304 3-oxoacyl-(acyl-carrier-protein) synthase 28 13 Op 8 . - CDS 26982 - 27833 825 ## 29 13 Op 9 . - CDS 27879 - 28583 754 ## COG2207 AraC-type DNA-binding domain-containing proteins 30 13 Op 10 . - CDS 28587 - 29678 812 ## COG3321 Polyketide synthase modules and related proteins 31 13 Op 11 . - CDS 29696 - 30058 397 ## 32 13 Op 12 . - CDS 30076 - 30828 673 ## COG0500 SAM-dependent methyltransferases 33 13 Op 13 . - CDS 30834 - 32159 1047 ## COG0161 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase 34 13 Op 14 . - CDS 32164 - 33480 1150 ## COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 35 13 Op 15 . - CDS 33507 - 33593 180 ## 36 13 Op 16 . - CDS 33614 - 34333 501 ## Kfla_5893 phytanoyl-CoA dioxygenase Predicted protein(s) >gi|333601841|gb|AFDH01000145.1| GENE 1 235 - 1116 809 293 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_4387 NR:ns ## KEGG: GYMC10_4387 # Name: not_defined # Def: oxidoreductase domain protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 293 7 298 305 327 56.0 3e-88 MIGLDTSHAVEFTKLLNDPGHPWHVPGGRVVIAYPGGSEDFELSRSRVGGFTEKLRGEYG VEIADSPAAVAAACDAILLESADGRVHAEQFRQIAPYGKPVFVDKPLAVSSRDAGEIAAL AVRHGVPLLSSSSLRFAEGLTEALGGSEKGAVTGADCFGPLALEPTQPGLFWYGIHMVEM LYAALGPGCVHVTAAAGESHEVVVGVWADGRIGTVRGSRQGSPAFGAVVHREGGSRAVDI SADAKPFYASLLERVMELFRGGEPAVGIRETLEVIRFIEAANESRETGRRVRL >gi|333601841|gb|AFDH01000145.1| GENE 2 1399 - 1884 510 161 aa, chain - ## HITS:1 COG:BH3450 KEGG:ns NR:ns ## COG: BH3450 COG0262 # Protein_GI_number: 15616012 # Func_class: H Coenzyme transport and metabolism # Function: Dihydrofolate reductase # Organism: Bacillus halodurans # 3 159 2 159 163 202 59.0 3e-52 MGISFIFAMDRNNAIGIDNKLPWHLPADLKYFKKMTTGHPILMGRKTYDSIGRPLPNREN IVLTRQSGFKAEGCTVVHTVEEVLERYTEGEVFVIGGTEVFLLFWPHVDKLYVTFIDDTF EADTFFPEIDPGEWTLVSDEPGIRDEKNPYDYTFRVYERAQ >gi|333601841|gb|AFDH01000145.1| GENE 3 1995 - 2789 747 264 aa, chain - ## HITS:1 COG:ECs3684 KEGG:ns NR:ns ## COG: ECs3684 COG0207 # Protein_GI_number: 15832938 # Func_class: F Nucleotide transport and metabolism # Function: Thymidylate synthase # Organism: Escherichia coli O157:H7 # 1 264 1 264 264 417 70.0 1e-117 MNKYLELLKDIKENGTRKEDRTGTGTISVFGRQMRMNLAEGFPLLTTKKLHMRSIIHELL WFLKGETNIHYLHDNGVTIWDEWADEDGNLGRVYGAQWRTWQAPDGRTIDQITRVIDQIK TNPDSRRHLVSAWNVAEVDEMALPPCHYAFQFYVADGKLSCMFQMRSVDTFLGLPFNLAS YALLTHMVAQQCDLEVGDLVWTGGDVHIYLNHLEQVEKQLAREPFPLPKLEIKRKPDSIF DYAYEDFEFVGYQSHPGIKAPIAI >gi|333601841|gb|AFDH01000145.1| GENE 4 3013 - 3870 1035 285 aa, chain - ## HITS:1 COG:TM0422 KEGG:ns NR:ns ## COG: TM0422 COG1082 # Protein_GI_number: 15643188 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar phosphate isomerases/epimerases # Organism: Thermotoga maritima # 128 265 130 271 304 60 31.0 5e-09 MKIGLSSYSLYRAIRAGELDYVSALDWIAANGGEHMEVVPLEIDFTREPQLVQSIKEKAK STGIELSNYAVGANFLTENEGAYQDEISRVKREVDVAAELGVKLMRHDVARHEDVSIRTF NANLGRMIEACRTIADYAAQYGITTSIENHGYLVQASDRVLTVVQGVARPNFKTTLDIGN FMCADENPVASVQKNLPFASIVHIKDFYLRPSYRNPGEGWFKTTAGNYLRGAIAGQGDID MWEVLRLVKRSGFDGYLSIEFEGMEECRQGSKIAMDNVRRIWAEV >gi|333601841|gb|AFDH01000145.1| GENE 5 4166 - 4381 265 71 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNNGPKKEYDLRRLAGFIFLPHGIILCLCGLFSQAATLWNPYMWWGSVMLLFSATFLFWT GFERQAEEETF >gi|333601841|gb|AFDH01000145.1| GENE 6 4391 - 4639 256 82 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MQYDWSSISRTVGFYRRHQVIPSIEEIEDTWQRAQDGSREAAIRFLDWRRHCLLAKTDEQ RAAMILVMNYSYKLFNRGSTSS >gi|333601841|gb|AFDH01000145.1| GENE 7 4774 - 5844 1295 356 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_0082 NR:ns ## KEGG: GYMC10_0082 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 1 351 1 355 361 230 42.0 6e-59 MNKKIWMSVLVLLLTFTVVLAGCGKKESPKTALEESYTAASTMNSADFNMNMTLNLDFPE SALKADPSLAMGANFLKNLDVTAKGVYQADPMQLEMTLEANLKGDMPMKISLPMVMTKDK MYVKVPNIPLLPIPKDTVGKYIVVDVNELNQTTDGKVNVNAIDVKKQQQFGQDAMKIFTT NFDEKTYFVDVDKKNAGLPESVDAKQVVKFQITNENLEPTIKTIVEKVAPQLLDLVSSDK YKDMLQVDPAEIEKAKKELAAGSSKEDTQKAIDELKKVLKINEFNILTAINKDKFPAYQE INANLDVTDEKQGTFKVGTKIKTEYSNINKKANLQPLPTDTLTIEQFSQKMQASGM >gi|333601841|gb|AFDH01000145.1| GENE 8 6359 - 6475 186 38 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MMIASLIIGLALAGLILWATIWITNKAYSRKWENPDED >gi|333601841|gb|AFDH01000145.1| GENE 9 6664 - 7512 1012 282 aa, chain + ## HITS:1 COG:BS_yodJ KEGG:ns NR:ns ## COG: BS_yodJ COG1876 # Protein_GI_number: 16079020 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanyl-D-alanine carboxypeptidase # Organism: Bacillus subtilis # 79 278 72 270 273 206 53.0 5e-53 MTPKKRITRLLILASAIALFAGCENSKETGGNSPAATSTPGTSAVTSPSASPSAAPGSTS KPTTSPTPASTSKGTGTGKGTDGAEQVAAKPESMTVLVNKQFKLPDTYKPSDLVYPDVNF VFAEKIEKRMMRKEAAGALENMFAAAKKDGTPLAGVSAYRSHSTQTTLFNRYVQKDGEAA AKKYSAVPGHSEHETGLAIDVAGSTGKCAAEDCFGGTPEAKWLEDHAHEYGFIIRYPKGK ESVTGYQYEPWHLRYVGTQMAKDIKTKNTTMEEYLNAVPVAK >gi|333601841|gb|AFDH01000145.1| GENE 10 7792 - 8544 569 250 aa, chain - ## HITS:1 COG:BH1834 KEGG:ns NR:ns ## COG: BH1834 COG1556 # Protein_GI_number: 15614397 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus halodurans # 18 249 3 229 230 114 35.0 2e-25 MSKSAADFLNRLEAESRRKQEAFLGGIASRLGRPRITERPARPFRGAPDFWNAVDLDEEA RIRLFMDNWRKAGGHAEKLASMEEAAAFVRQLIRDLEARRVIRQDQPELEAIAAVLKTAE GLDRLTVWNAEHVSDAEKEAGLADAAGADIGLVAADCAAAHTGTVVLMSSPRKGRSVSLL PAVLVAVVPASRMKMRLGEVLRPLDGLAAGVRPAGIHFISGPSRSADIENDLTIGVHGPG IVYALVVEDC >gi|333601841|gb|AFDH01000145.1| GENE 11 8537 - 10048 1269 503 aa, chain - ## HITS:1 COG:BS_yvfW KEGG:ns NR:ns ## COG: BS_yvfW COG1139 # Protein_GI_number: 16080457 # Func_class: C Energy production and conversion # Function: Uncharacterized conserved protein containing a ferredoxin-like domain # Organism: Bacillus subtilis # 1 466 1 465 479 444 48.0 1e-124 MSMSSGGGSVKDRAKIALNNDFLRKAVKFTTERLKTGKLNAAAEQGNWEEWRERGRQIRL HTIAHLDYYLGAFVENARAQGVHVHFAETAEEAVSITMEIARHQEAKSVVKSKSMVSEEI HINRALEELGIEAVETDLGEYIIQLAGEAPSHIIIPAIHKNRYQIAELLSEEAGETLPPD TGVLAGFVRRKLREKFLEADIGMTGCNFAVAETGSIVLFENEGNGRMVSTVPKTQITFMG MERIIPTLDDLEVMATLLPRSATGQKLTVYMSVISGPRREPDGDGPEEMHVIILDNGRSL QLGDPDFQELLNCIRCGACLNACPVYRHIGGHAYGGTYSGPIGAVLTPALNRNTAEWDDI AGASTLCGACYEACPVKIPLHDMLVYLRGRKVEKGHGDAAEKAGMSAFGYIMADAKRLRR VAALGRFGQRFVARGGVIKARIGPLKGWNTHRYAPALPPKTFREEWKSLAEEAAGSLPEM DADVKSRMERIIDARRKGDGRHE >gi|333601841|gb|AFDH01000145.1| GENE 12 10035 - 10778 706 247 aa, chain - ## HITS:1 COG:BS_yvfV KEGG:ns NR:ns ## COG: BS_yvfV COG0247 # Protein_GI_number: 16080458 # Func_class: C Energy production and conversion # Function: Fe-S oxidoreductase # Organism: Bacillus subtilis # 1 236 1 235 238 280 57.0 2e-75 MKVSLFITCLSDLVYPRVGQAMVRLLARYGIRVHFPEVQTCCGQPAFNSGYWDDARKSAR TLLEAFDDSDFVLSPSGSCTGMVQHYYPKLFQDDPELLAKAEALREKTYEFTQFLVGVLG VTDLGAVFPHRVTYHPSCHGTRLLGIKDEPASLLEHVRGLELVPLPHAEDCCGFGGTFAV KMSDISGAMVAEKSDHVLETEAEVLVGLDMGCLMNISGNLLHRGRPVKVMHLAELLEEGV RRADEHV >gi|333601841|gb|AFDH01000145.1| GENE 13 10907 - 11668 735 253 aa, chain - ## HITS:1 COG:BH1553 KEGG:ns NR:ns ## COG: BH1553 COG1349 # Protein_GI_number: 15614116 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Bacillus halodurans # 1 251 1 250 251 273 59.0 2e-73 MLVAERWQKILALVNERGSIRVTELSELCGVTEETIRRDLDKLESEGRLMRSHGGAVRVG ESQPEIPFKERETVHADLKRSIAREAVKHIRENDRIILDASTTAWYMAQILPDEPLTVLT NSIQVAVELSSKEKIQVVSTGGRLLPQSLSYAGPLAERSLDTYHVDKAFLSCKGVHTARG ISESSELQALVKAKMVAISDEVFLLADHSKFGLQSFAHVASWERIGHVITDSATSADSLE VLREKGVKVTRLS >gi|333601841|gb|AFDH01000145.1| GENE 14 12084 - 14153 2175 689 aa, chain - ## HITS:1 COG:BS_yuxG_1 KEGG:ns NR:ns ## COG: BS_yuxG_1 COG3347 # Protein_GI_number: 16080174 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 1 425 1 425 425 674 71.0 0 MTANLWDAEIAVGVKKGLDELVYRSNLLGFDRTVANWGGGNTSAKTTVTDFRGREIEVMW VKGSGSDLASMKAENFTGLRLDDIRPLMEREEMTDEEMVAYLGHCMVDSRHPRASIETLL HAFLPFKHVDHTHPDAIIALCCADNGKELAREIYGDRFVWVPYVRPGFTLSKMIAEGVRG NPAAELVLMEKHGLVTWGETSAACYKKTIEIISEAENFIESRMNRAALFGGAKYETLADS ARREILAQVLPVIRGAVGGERKMLLTADAGEDVLAFVNSREAQALSQVGAACPDHLVHTK MKPLYVDWNPAEADVPALIEALKSGIAAYKEAYEAYFERNRNEGDAMFEAAPRVILIPGL GMVNTGKSRAMAQVSGALYHRAIAVMRGATALGNFVSLSENESYNVEYWPLELYKLTLAP AEAEFSRKVAFITGGAGGIGGAAARELLKGGAHVVLADLNLEGAQTLAAELNRQYGQGRV IAAAVDVTREEQVAEAYKETVLAFGGVDIIVNNAGLATSSPFEDTTLKEWNLNMNVLGTG YFLVAREAFKIMKVQGTGGSMVFVGSKNSVYAGKNASAYSTAKAAEIHLARCVAAEGGAY GIRVNSVLPDAVLQGSAIWNSGWRSERAAAYGIEPDQLEEYYRKRTTLLVNVYPQDIAEA IAYFASSKSEKTTGCMLTVDGGVPAAFTR >gi|333601841|gb|AFDH01000145.1| GENE 15 14767 - 15615 993 282 aa, chain - ## HITS:1 COG:slr1442 KEGG:ns NR:ns ## COG: slr1442 COG1805 # Protein_GI_number: 16330146 # Func_class: C Energy production and conversion # Function: Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrB # Organism: Synechocystis # 77 254 78 255 285 90 34.0 4e-18 MRNEMNTHLRSVVSWRDYRIDPRYFILAFLSSFAIAGQVYLGFFQKWDAVFAAVVCTTGT EIILNRLKNKTWVFPLSALITGIGISLLLSSNQLWPYALTAVIAIALKYAIRFKGGHIFN PNNVAMVIMLYSLPQYAVSTPKQWTNGIGVMILILCLGIVVCYIANRLDAVLAFLGSFTL FAFVRHFFFGAPLFAALGPLMGASLQLFAFFMITDPKSTPATRSARIAFAFFVALLDAVF RINRIPNPQFYALFLVCLALIIPYRLWASRKTAPEPGLTASS >gi|333601841|gb|AFDH01000145.1| GENE 16 15628 - 16524 761 298 aa, chain - ## HITS:1 COG:BS_yqaJ KEGG:ns NR:ns ## COG: BS_yqaJ COG5377 # Protein_GI_number: 16079682 # Func_class: L Replication, recombination and repair # Function: Phage-related protein, predicted endonuclease # Organism: Bacillus subtilis # 3 297 6 319 319 200 38.0 3e-51 MCAKKLVNTRDLSYEEWLAWRRQGIGGSDAGAVYGADKWKTALEVYLDKTGELPPSEEKE AMKLGSKLKDFIAREFTDRTGHRVMRRNWIFQHPEHSFMLAGLDRWVIGSHAGLLCKSTG EFSKEEWENGRVPAKIDFQCQHYMAVTGADHWWVAVLIGGNKFRTVRLERSEERIKRLID REAVFWNEHVLRRRPPSFDGTDASSDLLNRLYPPPTSRNSSVRLTEEAEGWIGQYRQGAE EERAATLRKTEAENKLKGLLGEHEQGTVGNYKVEWKSINRKSDRFTPYRRFQISTISK >gi|333601841|gb|AFDH01000145.1| GENE 17 16568 - 17572 747 334 aa, chain - ## HITS:1 COG:no KEGG:Caci_6382 NR:ns ## KEGG: Caci_6382 # Name: not_defined # Def: hypothetical protein # Organism: C.acidiphila # Pathway: not_defined # 85 279 73 280 331 92 33.0 3e-17 MQVIAVAAGIGACLAVLAPFIYLKAFHRSIPKMVAKFPLTGNVHYDRKFPQILRAFLSGS NWALKPVLVMPKLRARLENRFEPFYKGFAYEGAGMGLGVKSALFLSGGRRFEAYIHQLSP GYLYQYYVGLGWYLTIRYGFRYRAYKRWIKQLDPRYAPIVFDGAGFMTALFHYKKNKQII QKFRHFPFPYQRVCYQGFGRCLWFLTEFDLQKTAAELENLPAEFRHDAYSGVGLAAAYSF FDQLAFAAHADKQIPEQYRPSFRQGLAFGWEARRLQDTVYWDEQLERYTYPVILKVTGFV DRVHEAVQLLGKDDTEADYYLRWMDTVRSLLKEE >gi|333601841|gb|AFDH01000145.1| GENE 18 17670 - 18308 573 212 aa, chain - ## HITS:1 COG:SMa0319 KEGG:ns NR:ns ## COG: SMa0319 COG2207 # Protein_GI_number: 16262625 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Sinorhizobium meliloti # 83 205 205 331 333 74 31.0 2e-13 MDLLVFVHKAEKCKDYLADLLLLSKKVKLTEFVDFNSALQLVKQAHYKLIVFLTFEPSFP KTWNVNELRINSPLLALAGADKISLSSLISLIDMVAQNEEVSHDNRLFAESLAYIDENIC ENDLNLEKVASQIYVSRCHYSRMFQKYVGTGFKEYVMNKRIQKAKLLLKRGEPVTDVCFS VGYNDLTHFGRIFKRKVGVNPSVYRLSKAASQ >gi|333601841|gb|AFDH01000145.1| GENE 19 18971 - 19531 494 186 aa, chain + ## HITS:1 COG:lin1340 KEGG:ns NR:ns ## COG: lin1340 COG1974 # Protein_GI_number: 16800408 # Func_class: K Transcription; T Signal transduction mechanisms # Function: SOS-response transcriptional repressors (RecA-mediated autopeptidases) # Organism: Listeria innocua # 63 184 80 202 204 137 58.0 1e-32 MYDVAEQLEEEDFVLLQTMAAHLANKNRAQTPGELYRSGKVRAASIQPGSELREASLSAE YYVRLPLIGKVTAGSPILAAENIEEYFSVPKNLVGQGKHFILRIQGESMINKGIENGDLV LVRQQSSADNGEVIVALIDGEEATVKTFFKESNRVRLQPANDRFQPLYPVNVSILGKVVS VLRDAE >gi|333601841|gb|AFDH01000145.1| GENE 20 19620 - 19838 121 72 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNGGLDLPSLDRFEVGLPDRQAEEPSQVTECAFDRCRSPIYAGEKNWDFDRDWFCSAACI ARHLGAEKRYVE >gi|333601841|gb|AFDH01000145.1| GENE 21 19975 - 20760 791 261 aa, chain - ## HITS:1 COG:slr1442 KEGG:ns NR:ns ## COG: slr1442 COG1805 # Protein_GI_number: 16330146 # Func_class: C Energy production and conversion # Function: Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrB # Organism: Synechocystis # 50 242 71 260 285 74 28.0 1e-13 MSKDPRLYILAFLLSFVAAGQLFLGFFQRWDSFFASVLTAVTLEFILVGWLKKKWAFPLS ALITGIGISLLLSSYAVWPYVLTAVLAVTIKQFVRLRGAHIFNPNNVAMVIMLIALPAYA VSTPKQWTNGIEVMSLIMILGLFAAYKAKRLDSVLAFIGGFSFFASIRVGFFGEPALYAF GPMMGASFQLFSFFMITDPKTTPPTRKARILFAFLIAFTDAWLRVNQITNSQFYASFLVT LLLGVPYRLLANKTGKTGIPV >gi|333601841|gb|AFDH01000145.1| GENE 22 20761 - 22491 1731 576 aa, chain - ## HITS:1 COG:no KEGG:Acid345_0425 NR:ns ## KEGG: Acid345_0425 # Name: not_defined # Def: hypothetical protein # Organism: A.bacterium # Pathway: not_defined # 67 573 63 556 569 237 33.0 1e-60 MQVKPLSKMLLAVSALLLTATGCGAGQNRTDFGFSLKETTQASGVKFTHSKPTFDSKVAN IMPWMASTGAGVFTADYDGDGFMDLYFVNSAKGSKNALFHNNGDGTFTETAESAGLADVN KDGISEAAVWFDYDNSGYPSLFVGSWGKSRLFHNNGNGTFTEVTDQAGVGYKGYVNKAIV LDYNKDGNLDLYLSCYFHEKNDLWNLTTTKIMHNDFERARNGGRNVLYRNNGDGTFTDVT AELGVGDTGWTLASGTWDVNNDGWPDIYNANDFGPDTLYLNEEGKKFTAVVQPRGIGDDT FKGMNVDFADIFHDGKPAMYVSNVSKSQYILEGNQLWHEKDGQFIDRGKEMGVNLAGFSW GARFMDLDNSGKSSLVVQTGFVSASKKKDYWFDLGTLATTPGNIVEDTKNWPAFADKSLS GYENKFLFYPQGNKFTDIAGQVGLDFVEDGRGISAVDIRNQGKLDLVFANQGGPARVYEN TVTNQNNWIKLDLIGTAPSSRDAIGARVTFEVNGVETVMEKDGANSFGGQSDPRLHFGLG KADKADKITVRWPSGRVEQFRDVPKNQILRLTEKKD >gi|333601841|gb|AFDH01000145.1| GENE 23 22532 - 22795 376 87 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNVKAVKSRIIEVTVSLLDSTEPMEELDADAFLRKPLPEIGIDSLAVLELVVTLEREFGV RMTEDDLGGIATLEDILTFITGRAGQS >gi|333601841|gb|AFDH01000145.1| GENE 24 22810 - 23559 333 249 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 11 246 4 238 242 132 37 2e-30 MATTTYSFTGKTILVTGGSRGIGRAVVKQLASAGARVVFTYSKDRQAAETLLDETGNDLS RVSCVQADFTDKLAVARMVANLLEEGPVHGVVNNAGILQDTPMYRMTDEQWDTVLQVNLT SLHIILKNLIRPLAASRGSVVNLSSVTGIAGAAGQTNYAASKAGVIGLTKALAKEAGPLG IRVNAVAPGFIGTDMLESIPARRKRDLEKDIPLRRLGTPEEAASAVLFLLSDAASYMNGA VLVVDGGLL >gi|333601841|gb|AFDH01000145.1| GENE 25 23568 - 24836 952 422 aa, chain - ## HITS:1 COG:CAC2008 KEGG:ns NR:ns ## COG: CAC2008 COG0304 # Protein_GI_number: 15895278 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: 3-oxoacyl-(acyl-carrier-protein) synthase # Organism: Clostridium acetobutylicum # 101 420 74 405 406 127 28.0 5e-29 MKNTSVLVTGTNMLCSLGMTNQEVWEAALSGSVPEPSRRSYPFPDGNRLEYPVFSLPDFD LSDWLDEKSVRWLAENHLLDDRDFCMLLLSIRQALDDASFRITGDSRIGLVIGHENLGAV KLTDKFIRYQDTAPQTDLAEKSPLFNEFRREFFNIQTFPYLFYLAQLLGVNGPGYVVNNA CASGLYALELGRMLIASGSADLVIVACSDYAHASEYLWLQEKGFVSGQMKIRPFDLHRDG SILGDGAGTIILESAEHAAGRPAEPLAVYRGGAFLQEHWHMTLPDVSRHSYASVITEAAG HGTAPEIDVIVPHGSGSTLWDRYEANEIHRAFGRLNRPVPAVTSFKGYFGHLLGASAMIE TVLLLHCMKKEILLRTLNYEQADPRVQLPVQTLTAHRKTASALKSVPAYGGFHAAVLFNK PD >gi|333601841|gb|AFDH01000145.1| GENE 26 24873 - 25724 729 283 aa, chain - ## HITS:1 COG:no KEGG:AMED_4043 NR:ns ## KEGG: AMED_4043 # Name: fabF # Def: 3-oxoacyl-[acyl-carrier-protein] synthase II # Organism: A.mediterranei # Pathway: not_defined # 54 196 61 200 369 67 36.0 6e-10 MPQFIYLSGCGYYMAPSFAAIVERPDSRPSAEDSAEDSAEDSDDETLSSRIEDEPEEAAR GLKGLKRHSRAVRLACLAIKEALQMASIPGHVPGGKRNDIGVVVGTNDANLEAIDRLQQE AETYGVNNTNPGLFPETVLNVIAGQASIYFGLGGPNVTISGGDFSSVKSLQYAADMLESG RASHVAVCIVRLLPPAVFEGSIRYRAARESVVALVLSRMPSGGDGLKLRVASGTDLPDAA ATRVTDEQLPAVLAVRLRSGELPSGTSVIYADAGPEGLLAVEF >gi|333601841|gb|AFDH01000145.1| GENE 27 25738 - 26985 766 415 aa, chain - ## HITS:1 COG:SMa0853 KEGG:ns NR:ns ## COG: SMa0853 COG0304 # Protein_GI_number: 16262919 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: 3-oxoacyl-(acyl-carrier-protein) synthase # Organism: Sinorhizobium meliloti # 20 406 6 402 402 248 38.0 2e-65 MNQAGYAPEERSRQAGQTAVVTGLGVVTSIGTDEASFWRNLLRGETGVKPITVFDVEKHT NRMGCQIDDIPLSEYAPDALQKSGRATRILMPAIEQALRNAGLDKPALSRCRVGLCVGTT MGDIDPLEGAIQGKRSEAFGGPHVITEQIGRLLGLRGPVWTFTNACAAGNFAIARAMDEI ASGRADVMIACGADSLSWVAFTGFSSLRAMAPDRCRPFDVRRKGLLLGEGAGVLVIESQA HAQARRIRPRAGLLGYGMSCDAHHITQPDPQGEGAVRAMRAALKMAAIPASAVDYVSLHG TGTQANDKMEAAALSAVFKETRLPAASSIKGHIGHTLGAASAIEAVMSVKCLEEGVAPPT LNLEQPDPACPVPVLMKEPAPGRYRTVLSNSYAFGGVNSSIVLSAVHGQRPENLE >gi|333601841|gb|AFDH01000145.1| GENE 28 26982 - 27833 825 283 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRKRWQFLLAVLIVAGLLTEFYYYWNRPYKLPPVSDGMRLAEYNLAFEKEKAAAGGQAQG SAEELQKKVAAEPDNLAYGNALRIAMGKEGRIDAFVSFMKSLEQPPARAKLQMALAYVDQ MQNESLGTASLGQISVHSIELMNEVLEKDPYDWLAHYARGINNLYWPVGLQRIDKSIQDL SFCLAVTKKFEQDHPFYMWTLAYTALGDALVKKGEVGDGMKIWKEGHQAHPDDPDLKERA QASKEQAVEIVVRERGMDQFQRPEPGISDLSPIWNPVKEGQDK >gi|333601841|gb|AFDH01000145.1| GENE 29 27879 - 28583 754 234 aa, chain - ## HITS:1 COG:CAC2818 KEGG:ns NR:ns ## COG: CAC2818 COG2207 # Protein_GI_number: 15896073 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Clostridium acetobutylicum # 129 224 181 275 279 73 37.0 3e-13 MIVFWDREAGRDAGDSDPADSHPLDSRDTPAAAYVADGLILHVGTAEDARRQATAGSCEA LVVLTENERVETGELPADASVPVYVFTKADKQSRFVIQLLFHYLASIQSHVFSRKTFAGT GPDTEMDWERVLKHIQDNLGTGELSLESVAKECYVCKWQFSKVFKKQFGITFRDYLIEQR IGEAKKLLVKGHSVTDACYAVGYGDMTHFGRIFRKKVGVSPSDYRKHYYSQFIL >gi|333601841|gb|AFDH01000145.1| GENE 30 28587 - 29678 812 363 aa, chain - ## HITS:1 COG:alr2680 KEGG:ns NR:ns ## COG: alr2680 COG3321 # Protein_GI_number: 17230172 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Polyketide synthase modules and related proteins # Organism: Nostoc sp. PCC 7120 # 87 288 1337 1540 2518 66 27.0 6e-11 MSGVTTVKTALFNETYHAAYEYVSDFTAFTLLNAMKAGGIDLNGPVRESRLLSQIACSEV NRPLLNWALHFLEQQEFVRKTTGPGGTAVLTLTAKGRDWTNPGNPFPAVHVAPSLKLIEY AGTFWLRAIRGEVQPQHRLFNREGIALWEVYFHNAHDLYAVHNQWAAEELADLIPAESCT ILELGTGFGSATRALLTEIRLRSKFVEEYTVSDASRLLAAKAGRMLEGELPPHKLRQLTL DINEVKSGGETYDFIYAVNVMHCAEDLALSLDALRRLLKPGGRIVLSECVREHYRSRLHQ EFIFSLLPDFKPVGGADGDTSCFGFLRPEDWWEVMQAAGFRDICVKMNEGPVRGAIITGS REG >gi|333601841|gb|AFDH01000145.1| GENE 31 29696 - 30058 397 120 aa, chain - ## HITS:0 COG:no KEGG:no NR:no METENKHKLIKWEEMNWEPGIYENTEMSYLYEDEQGRLCFLVKLHPGSFIPMHDHPRREF AYLIKGDLILNENEVMKEGDFLTAGLAESHDVRTENGALLYVFIDYHVIRQRIVEIETTS >gi|333601841|gb|AFDH01000145.1| GENE 32 30076 - 30828 673 250 aa, chain - ## HITS:1 COG:mlr6226 KEGG:ns NR:ns ## COG: mlr6226 COG0500 # Protein_GI_number: 13475202 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Mesorhizobium loti # 9 243 21 254 258 100 30.0 3e-21 MAAREHWHDFFGKDYLLFSEVILNEERTRFEIGQLLSLLNLPEGASILDLGCGQGRISVP LALRGYQVTGIDASDTLLDEARRRALASRAEAVFKSLDMRELDFADEFDAVLNLGTAFGY LENEEENQDILHRVYRALKPGGQLIQETENRDFKLLYSAKKTWDMMNGCPVWSQREFDSV TGRWNEEMTWFDNGELKSSRLNLRLYTAAELLHLHGNAGLDVKGIYGGFDLSPLTTSSPR MLLHLEKKTD >gi|333601841|gb|AFDH01000145.1| GENE 33 30834 - 32159 1047 441 aa, chain - ## HITS:1 COG:BMEI1757 KEGG:ns NR:ns ## COG: BMEI1757 COG0161 # Protein_GI_number: 17988040 # Func_class: H Coenzyme transport and metabolism # Function: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase # Organism: Brucella melitensis # 32 437 34 447 456 213 34.0 7e-55 MHKSYPVIHPFTWMPPSGTLTTDTWLEQVTCLERGDGSWVYDTQGKAYLYTTTAVPTVGL SNWRVIQAMKEQMERLSFASTCAQTHGLVEPLADKLLRLCGSRYAKVFFTNDGSGAVETA MRLIRQHFISRGEAKRDKFISFDGNFHGTTYGSGSVTHLGIREMFGRGLDDCLCAPAPNL YRPPGALSSPESAADFCLKELERLIGEAGPETIAAVLVEPIQAVNGVVLMPETFFSQIRT LTRQYGIAVISDEVTTGLGRTGHWSLSEKYGLEPDVLAVSKGLTGGYFPMGAVLMSSELD DSLFGSGGILLHGSTQCGHPVGCAAALEVLEIIEQDGLPDHAAVRGQGLLDDFADALAGH PNVGDIRGMGLMLALEFVKDKATKEPVDFEWGRRLSGHLHDEGILGNYFNGILLMYPPLN VSGEECDFLVHGVTRALRRMG >gi|333601841|gb|AFDH01000145.1| GENE 34 32164 - 33480 1150 438 aa, chain - ## HITS:1 COG:BS_yhfL KEGG:ns NR:ns ## COG: BS_yhfL COG0318 # Protein_GI_number: 16078091 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II # Organism: Bacillus subtilis # 81 432 152 504 513 160 33.0 7e-39 MLEIAGLAADPNRGQRTVAIDVSVGWRAIPLFLAALRQKVTLVPVDPAKNPGLTENVLSW IKPELYITPALLNEDGELLSVLKPVTASPREELRDVAVVLYTSGTTGRPKGVMLTYGNIW SNVGSILGYFKPAPEDRLYLFRPLTYASAFTGELLPSLFRGAAVYFRPPDTNPLSTMKSI QRDGITILGTTPTVAATFARFRKRFDFGSLRCLMLSGECLTVRQAELIAEAFPGAAVWNA YGLTEASPRISCLTEEGAFLNRKGCVGRPLEGVEVKVRAEDTEGRAAEEGEEGVLYVRGP NVMKGYYGDPAATSLKIKGGWLRTGDRAVIREGDIYILGRADSLIIRGGVNMDPSEIESE LMKLRGIKEALVFADYSEDRTRVHAWITCEQGVLMTQIRSTIIHEIKDSRLWPDVIEMKE ELPKTASGKLIRPIQSLR >gi|333601841|gb|AFDH01000145.1| GENE 35 33507 - 33593 180 28 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MQSYFSVSYLTILAYAQWMELMKSPTAE >gi|333601841|gb|AFDH01000145.1| GENE 36 33614 - 34333 501 239 aa, chain - ## HITS:1 COG:no KEGG:Kfla_5893 NR:ns ## KEGG: Kfla_5893 # Name: not_defined # Def: phytanoyl-CoA dioxygenase # Organism: K.flavida # Pathway: not_defined # 1 200 20 223 277 112 33.0 2e-23 MFSPDEAEEVKRALKEVWTRGIRSRTILQSLVFPLESLFPPLRNVHQSHEALRRFSLDSR AFGTAARLLGENALLVGTTGFYKCPGAKQLPLHQDNYDIGAEPAPGCAFWVSLDGASPEN GGLRMVPGSHRLGLLKPRAPGSRSTYGQSVPVPDRHTEVDLTTKPGDVVVFNGYTVHGSH ANRTRYGFRNSLVMHFVGESVRSLFVQNRELLNSAGDNIFRPVNKSHSVKRLFLNTDSD Prediction of potential genes in microbial genomes Time: Sun Jul 17 11:12:29 2011 Seq name: gi|333601826|gb|AFDH01000146.1| Paenibacillus sp. HGF7 contig00006, whole genome shotgun sequence Length of sequence - 9631 bp Number of predicted genes - 5, with homology - 5 Number of transcription units - 3, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 2/0.000 + CDS 1 - 759 720 ## COG1305 Transglutaminase-like enzymes, putative cysteine proteases 2 1 Op 2 2/0.000 + CDS 824 - 2368 1451 ## COG0519 GMP synthase, PP-ATPase domain/subunit + Term 2383 - 2425 5.3 3 1 Op 3 . + CDS 2828 - 4234 1814 ## COG2252 Permeases + Term 4252 - 4296 9.0 + Prom 4296 - 4355 8.8 4 2 Tu 1 . + CDS 4521 - 5798 556 ## BpOF4_21149 S-layer-like protein + Prom 6161 - 6220 3.8 5 3 Tu 1 . + CDS 6302 - 9382 1758 ## GYMC10_1435 Ig domain protein group 2 domain protein Predicted protein(s) >gi|333601826|gb|AFDH01000146.1| GENE 1 1 - 759 720 252 aa, chain + ## HITS:1 COG:lin0469 KEGG:ns NR:ns ## COG: lin0469 COG1305 # Protein_GI_number: 16799545 # Func_class: E Amino acid transport and metabolism # Function: Transglutaminase-like enzymes, putative cysteine proteases # Organism: Listeria innocua # 2 117 449 561 721 125 46.0 1e-28 AGEDFVDHFLFVDKLGYCDHFSSAMVVMLRAAGIPARWVKGFAPGEAGERGPDGSLAVTV RSRDAHSWAEAYIPGAGWLAFEPTPGFAAPSGAGAGAVPAAVSSPEEETAPADTAGPWAA ELLPALARAADSPAVRGLAALLALLGAAWLLQRFRPRRASKAPLRKSAALRRGTGSTALM ERLWLKVFRSHGRLAPQQTLREYVAGLAGLDPRRRRALEEFAALYEEVRYDCSGAGIIGK GRILELWKRIEG >gi|333601826|gb|AFDH01000146.1| GENE 2 824 - 2368 1451 514 aa, chain + ## HITS:1 COG:BH0607_2 KEGG:ns NR:ns ## COG: BH0607_2 COG0519 # Protein_GI_number: 15613170 # Func_class: F Nucleotide transport and metabolism # Function: GMP synthase, PP-ATPase domain/subunit # Organism: Bacillus halodurans # 200 514 1 315 315 541 81.0 1e-153 MDIQKSHELIVVLDFGGQYNQLIARRIRDLGVYSELLPYNTSADKIRELNPKGIVFSGGP VSVYGEGSPVVDPGVYDLGIPIMGICYGMQMIAHQLNGKVERAVTREYGKSEVEFQSHSR LAKNLDSKQVVWMSHGDHVCDLPEGFVLDASTETCPIAAMSHPDKNIVAVQFHPEVRHSA QGNEMIRNFIFDICGCTGDWSMESFIEDTIRDIREQVGDRKVLCALSGGVDSSVVAILIH KAIGDQLTCMFIDHGLLRKDEAESVMETFVGKFDMHVVKIDARDRFLGKLAGVSDPEQKR KIIGNEFIRVFEEESEQLGDFAFLAQGTLYTDIVESGTATAHTIKSHHNVGGLPEDMKFQ LVEPLKALFKDEVRKVGEECGLPGAIVWRQPFPGPGLAIRVLGEVTEEKLKIVRDSDAIL RDEIAKAGLDREIWQYFTALPNMKSVGVMGDARTYSYTVGIRAVTSIDGMTADWARIPWD VLEKISVRIVNEVDNVNRIVYDVTSKPPATIEWE >gi|333601826|gb|AFDH01000146.1| GENE 3 2828 - 4234 1814 468 aa, chain + ## HITS:1 COG:RSp1678 KEGG:ns NR:ns ## COG: RSp1678 COG2252 # Protein_GI_number: 17549897 # Func_class: R General function prediction only # Function: Permeases # Organism: Ralstonia solanacearum # 1 456 4 425 434 298 42.0 2e-80 MDRFFRLKENGSNVRTEIMAGITTFMAMAYVLVINPNILTAFGKTGMEWYPVFLATALAA GIFTIAMGLFVNFPVALAPGMGLNAYFATVVVSTASTNNPITWQMALTAVFISGIIFIIL TITRLRQMLLVAIPDGIKHAITVGIGLFITIVGLKNTGLMTIAAETVNDIPKGQFTPLKG FETVIELGSFKSPDVIMALIGLVLISILMVLRVRGAILFGILGTTIIALLMGYVDLSSLN NPQTPWIPDLGQLNFWEFDFAGIMGVGIVSVIVTFTFVEMFDTFGTLVGTANRAGIMKNK EEGNKRVGKAMFVDAFAVSGGAMLGTSTVTAYVESSAGVAEGGRTGLTSLTTGILFILAL FFAPIIALIPGSATGAALIVVGVLMMQSVRDIDFQDLVIGIPAFLTITFMPFTYSIANGI SLGIVGYVILAVISQLSSRVEKKHSIHWLMWVLFVLVIARYVFIGVSG >gi|333601826|gb|AFDH01000146.1| GENE 4 4521 - 5798 556 425 aa, chain + ## HITS:1 COG:no KEGG:BpOF4_21149 NR:ns ## KEGG: BpOF4_21149 # Name: not_defined # Def: S-layer-like protein # Organism: B.pseudofirmus # Pathway: not_defined # 39 384 23 360 408 216 38.0 2e-54 MVFLRKNKSIWGAALLFGTAALLLHEDAKADGLTTEIAAVVPVRSSSDVGGHWAESLIRK AAELNLIQGYSDGTFHPDGKITRAEFAAMLNRATKQKTDTTAAENSLSGLQNHWSQAEVN KLAVLGFIDQSDYKDGFSPDRELTRYEMIKWISSGLAQSEPSFKQALEDTKGTLLPTPET YEGGIVSDQIPYVALVKGTGIVDGFEDSTFRLAQATTRAEVSAILMRFMEVEGNKAEQYK GLNELREVGLTGSNLTTITKYKYGMDYNGVVRDFSFIRGKSISLRGGIGTMKINRVIAVD SDNDSNVSIYKPMFHENVEKYQRGKYILYSEIAVQSSVKDLTNLELGNSMGNGITSSTRL LGDNVTRFGLKTLSNRNNNELLNSSKDEFFWVSQVLQTTLPENRPSLSYSITADNKDFIM IYLSQ >gi|333601826|gb|AFDH01000146.1| GENE 5 6302 - 9382 1758 1026 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_1435 NR:ns ## KEGG: GYMC10_1435 # Name: not_defined # Def: Ig domain protein group 2 domain protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 149 1026 64 961 961 870 52.0 0 MDYIESDYKEFMKRPNGCSKVVVMYETPVDITWAGDIYEEKEITVVPDSSISVGQKVQLQ ANVKTKDWGANDWGKEYDVATRTTETTWKSEDETIATVNASGQVQGKKAGKVKVRATWDN GDYRISDVAEITVTTDPGLVINLPKPEFCTSDSSPQQAEAILTKPDGTSWPLQKHDKLTW TSSNPSIAVIDQTGKITLKAAGATEITAHFKDDLQHLDEKKSVTLTVKDCGSSGGGNPGT GNPQPPGGTNGCSPVINPPAKGLTQSGYSMDPQASAILRADRRGAETFNVLEGIPTSESL YANVQSLHYLFQNKFTNMTGEVTYSIPVTKTYVWTVPVPPPGVPIPMSQTVTQTMTVKRP YDYWQIDNLEIYRPGKARLSNYALGGYGGSVTLDANNYTPPVVTSTSKGDVSSHVQPSNC NSVNLGTGGGPPMNETGLFQAAAEAAVGANKVSNDLLVFDGVTLMDNRIHDAAAPLPKPI PQPARLGADTFYGTGYMISKTLANRQAQPTTGTIAYTLLPGNIKGGADRTFDIPGINPVT VHTPVIMVPSVSDDQAHNQKTSPAYDRSALILDRPFSVTLPTTGPHRGIPGYGIRDYAKY TRQKQVWFPFDTYDASMKFIPKHTWIDIPVGQLSATFYMPVWVDEGPYSVLFRSIAENAP VSFTTEPQANLTLINHVATDTVPVDVIGRLYDFKVTDIADYNWENVFRTAKGSAAHTGTK YWIGEKGIDGQPRPTGYPFILPIHPGSHPEEGYKNISVKTGYHIKFDLKTKGNMFGSEDG VRITPTFYFISNEDGKRQPVDLYYHADNKPFVRIGSPQDQEKRFVVLNDRLRNLSALELE QTARYLFDQAPGSFTNRAAFTADYIKKAAKPTWVGTYHWLILPQQVRTFIRETQNIPAGV DRARALASDQKWYGEYSLPAAVYAVPKGTDLAVYGRKQTLDDGSPVFLRNGYIVVNFNIE SIRGGDVNRAYLQYIHGPLNNQWQMEGGTGSVTDTKGQSFPVMDGDVVFYHGDLSSYDDF GSNGTH Prediction of potential genes in microbial genomes Time: Sun Jul 17 11:12:53 2011 Seq name: gi|333601825|gb|AFDH01000147.1| Paenibacillus sp. HGF7 contig00038, whole genome shotgun sequence Length of sequence - 1570 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - SSU_RRNA 14 - 1547 99.0 # AB021183 [D:1..1534] # 16S ribosomal RNA # Paenibacillus chitinolyticus # Bacteria; Firmicutes; Bacillales; Paenibacillaceae; Paenibacillus. Prediction of potential genes in microbial genomes Time: Sun Jul 17 11:13:13 2011 Seq name: gi|333601589|gb|AFDH01000148.1| Paenibacillus sp. HGF7 contig00228, whole genome shotgun sequence Length of sequence - 65783 bp Number of predicted genes - 58, with homology - 56 Number of transcription units - 28, operones - 13 average op.length - 3.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 162 - 200 4.2 1 1 Tu 1 . - CDS 212 - 1075 448 ## COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain - Prom 1104 - 1163 5.9 2 2 Tu 1 . + CDS 1238 - 2332 741 ## GYMC10_3694 glycosyl hydrolase family 88 + Prom 2649 - 2708 6.2 3 3 Tu 1 . + CDS 2745 - 3023 265 ## Pjdr2_0129 hypothetical protein + Term 3037 - 3086 6.7 + Prom 3342 - 3401 1.5 4 4 Op 1 25/0.000 + CDS 3469 - 4479 829 ## COG1622 Heme/copper-type cytochrome/quinol oxidases, subunit 2 5 4 Op 2 20/0.000 + CDS 4503 - 6473 1959 ## COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1 6 4 Op 3 16/0.000 + CDS 6474 - 7103 559 ## COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3 7 4 Op 4 . + CDS 7105 - 7449 444 ## COG3125 Heme/copper-type cytochrome/quinol oxidase, subunit 4 + Term 7459 - 7506 12.5 8 5 Tu 1 . + CDS 8715 - 10631 1565 ## COG0018 Arginyl-tRNA synthetase + Term 10768 - 10804 -1.0 9 6 Tu 1 . - CDS 10785 - 11723 815 ## COG1686 D-alanyl-D-alanine carboxypeptidase - Prom 11830 - 11889 5.3 - Term 11877 - 11913 7.1 10 7 Op 1 40/0.000 - CDS 11916 - 13052 1073 ## COG0642 Signal transduction histidine kinase 11 7 Op 2 . - CDS 13042 - 13737 715 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 13814 - 13873 7.3 - Term 13876 - 13913 6.0 12 8 Tu 1 . - CDS 13921 - 14889 889 ## COG0225 Peptide methionine sulfoxide reductase - Prom 14942 - 15001 4.4 + Prom 15017 - 15076 4.7 13 9 Tu 1 . + CDS 15121 - 15678 590 ## COG1051 ADP-ribose pyrophosphatase + Term 15857 - 15891 -0.7 14 10 Tu 1 . + CDS 16092 - 17609 1641 ## COG3325 Chitinase + Prom 17872 - 17931 3.8 15 11 Op 1 . + CDS 17972 - 19114 967 ## COG1408 Predicted phosphohydrolases 16 11 Op 2 . + CDS 19181 - 20173 928 ## COG2017 Galactose mutarotase and related enzymes 17 11 Op 3 . + CDS 20263 - 20949 742 ## Pjdr2_1819 hypothetical protein + Term 20968 - 21006 1.2 - Term 21017 - 21056 4.1 18 12 Op 1 . - CDS 21075 - 22004 762 ## COG2207 AraC-type DNA-binding domain-containing proteins 19 12 Op 2 . - CDS 22078 - 22806 430 ## COG1664 Integral membrane protein CcmA involved in cell shape determination 20 12 Op 3 . - CDS 22809 - 23441 475 ## BBR47_55250 hypothetical protein - Prom 23545 - 23604 3.9 + Prom 23519 - 23578 7.3 21 13 Op 1 21/0.000 + CDS 23724 - 24773 1214 ## COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components 22 13 Op 2 24/0.000 + CDS 24805 - 25608 886 ## COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component 23 13 Op 3 1/0.000 + CDS 25634 - 26560 722 ## COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component 24 13 Op 4 . + CDS 26472 - 27674 1042 ## COG1960 Acyl-CoA dehydrogenases + Term 27865 - 27902 8.0 + Prom 27931 - 27990 6.5 25 14 Op 1 19/0.000 + CDS 28204 - 29436 508 ## COG4585 Signal transduction histidine kinase 26 14 Op 2 1/0.000 + CDS 29426 - 30067 601 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain + Prom 30082 - 30141 3.1 27 14 Op 3 . + CDS 30176 - 32380 1372 ## COG2409 Predicted drug exporters of the RND superfamily + Prom 32513 - 32572 4.8 28 15 Tu 1 . + CDS 32596 - 32889 73 ## COG0386 Glutathione peroxidase 29 16 Tu 1 . - CDS 33192 - 33344 87 ## - Term 33707 - 33762 14.5 30 17 Op 1 35/0.000 - CDS 33787 - 35694 212 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 31 17 Op 2 . - CDS 35687 - 37432 236 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P - Prom 37460 - 37519 4.5 32 18 Tu 1 . - CDS 37955 - 39172 1068 ## COG1404 Subtilisin-like serine proteases - Prom 39266 - 39325 8.8 + Prom 39267 - 39326 3.4 33 19 Tu 1 . + CDS 39389 - 40636 1228 ## gi|304405699|ref|ZP_07387357.1| hypothetical protein PaecuDRAFT_2022 + Term 40658 - 40710 13.1 + Prom 40709 - 40768 3.1 34 20 Op 1 25/0.000 + CDS 40839 - 41096 386 ## COG1925 Phosphotransferase system, HPr-related proteins 35 20 Op 2 . + CDS 41105 - 42859 2003 ## COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) + Prom 42968 - 43027 2.8 36 21 Op 1 . + CDS 43057 - 44979 1484 ## COG3711 Transcriptional antiterminator 37 21 Op 2 . + CDS 44982 - 46121 1028 ## COG3964 Predicted amidohydrolase 38 21 Op 3 . + CDS 46105 - 46470 386 ## Tthe_1682 hypothetical protein 39 21 Op 4 . + CDS 46484 - 46846 485 ## Tthe_1681 hypothetical protein 40 21 Op 5 . + CDS 46850 - 47188 345 ## BBR47_31670 hypothetical protein + Term 47189 - 47215 -1.0 41 21 Op 6 . + CDS 47266 - 48051 832 ## BBR47_31660 hypothetical protein 42 21 Op 7 . + CDS 48053 - 48703 730 ## BBR47_31650 hypothetical protein 43 21 Op 8 . + CDS 48782 - 49882 1372 ## COG1921 Selenocysteine synthase [seryl-tRNASer selenium transferase] 44 21 Op 9 . + CDS 49927 - 50646 830 ## ABC1414 hypothetical protein + Term 50668 - 50712 10.2 + Prom 50871 - 50930 3.0 45 22 Op 1 . + CDS 50969 - 51622 670 ## COG1418 Predicted HD superfamily hydrolase + Prom 51674 - 51733 2.5 46 22 Op 2 . + CDS 51915 - 52148 222 ## COG3237 Uncharacterized protein conserved in bacteria + Term 52199 - 52237 7.8 - Term 52306 - 52341 -0.3 47 23 Tu 1 . - CDS 52351 - 53355 1034 ## PPE_04322 hypothetical protein + Prom 53652 - 53711 6.8 48 24 Op 1 7/0.000 + CDS 53746 - 54411 638 ## COG2059 Chromate transport protein ChrA 49 24 Op 2 . + CDS 54426 - 54962 652 ## COG2059 Chromate transport protein ChrA 50 24 Op 3 . + CDS 54955 - 56166 255 ## PROTEIN SUPPORTED gi|163762640|ref|ZP_02169704.1| ribosomal protein L33 51 24 Op 4 . + CDS 56269 - 57111 962 ## COG3386 Gluconolactonase + Term 57137 - 57192 14.4 - Term 57125 - 57180 17.0 52 25 Tu 1 . - CDS 57196 - 59295 1966 ## COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily - Prom 59381 - 59440 6.4 + Prom 59357 - 59416 5.6 53 26 Op 1 . + CDS 59506 - 59679 234 ## 54 26 Op 2 25/0.000 + CDS 59734 - 60204 582 ## COG1622 Heme/copper-type cytochrome/quinol oxidases, subunit 2 55 26 Op 3 . + CDS 60234 - 61907 1729 ## COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1 + Term 61924 - 61965 8.0 + Prom 61973 - 62032 5.4 56 27 Tu 1 . + CDS 62120 - 63298 966 ## COG0665 Glycine/D-amino acid oxidases (deaminating) + Term 63367 - 63397 1.1 + Prom 63306 - 63365 2.1 57 28 Op 1 9/0.000 + CDS 63413 - 64417 1068 ## COG0673 Predicted dehydrogenases and related proteins 58 28 Op 2 . + CDS 64410 - 65405 1179 ## COG0673 Predicted dehydrogenases and related proteins + Term 65437 - 65487 -0.8 Predicted protein(s) >gi|333601589|gb|AFDH01000148.1| GENE 1 212 - 1075 448 287 aa, chain - ## HITS:1 COG:BH3679 KEGG:ns NR:ns ## COG: BH3679 COG4753 # Protein_GI_number: 15616241 # Func_class: T Signal transduction mechanisms # Function: Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain # Organism: Bacillus halodurans # 182 285 150 253 257 85 39.0 9e-17 MRLDNYADLGRHPVQLSLYLNRSESFRDIFHAHQGIEILYVHRGNGRVMIGQELFEMKPG TLLYFKPFQLHTIRMTITEQQPYIRSMLLFDPAVLLRYTEPYPSLNSFLLHIWKHPFGDQ WVDVTDTDAMDKLFHFYKGEPQANRNTPAQSEKVLLDTLSLLHRIQAIFDKQSAVGRAGS ALRFSPSVVAILAWIEANYASEFRLTDLARHVHLTPNHVSYLFHRETGSTLTNYLTAKRL QQASFLLKTTNLSVREIGHRIGFSNFSYFCQLFKKHNGLTPAKYRMS >gi|333601589|gb|AFDH01000148.1| GENE 2 1238 - 2332 741 364 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_3694 NR:ns ## KEGG: GYMC10_3694 # Name: not_defined # Def: glycosyl hydrolase family 88 # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 6 364 15 397 397 464 60.0 1e-129 MNKEELWGSLYKKVNAMAQKMGNKSPHVAFDGVYDDMRIDWWTSGFWPGMLWIMHEMTGD PSFRERAWDWDANLEQCMVSNSNLHHDVGFQFLPTAVIKYKLTGDADARRRGIQAANFLA GRFNLAGRYLRAWNQDKTGWAIIDSCMNLSLLFWAAEEIQDPRFRHLAAAHADTVLEHFI REDGSVRHIVSFDPETGAFLEALGGQGHSPESGWSRGQAWALYGMANVYRYTGDMRYLHA AKRVAHYFLASLPEDAVPHWDFRTGNAEGEPRDTSAAACAASGLLEIAKHVASPERELYE RAAVRIMAALAGSYASFDDETEAILREGTGNKPAGQNVDVGLIYGDYFFVEAAAKLNGWQ GSIF >gi|333601589|gb|AFDH01000148.1| GENE 3 2745 - 3023 265 92 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_0129 NR:ns ## KEGG: Pjdr2_0129 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 1 87 1 91 102 88 49.0 9e-17 MTTKTLTVPQRQKNEREVGRLFTFMNMMAWSSLVIGIIMSLWNVFHFSDKNLTLMVGIGF MVGSVFIYTIGTAIHLVHERKFEQQENGEVTE >gi|333601589|gb|AFDH01000148.1| GENE 4 3469 - 4479 829 336 aa, chain + ## HITS:1 COG:BMEI1901 KEGG:ns NR:ns ## COG: BMEI1901 COG1622 # Protein_GI_number: 17988184 # Func_class: C Energy production and conversion # Function: Heme/copper-type cytochrome/quinol oxidases, subunit 2 # Organism: Brucella melitensis # 14 282 19 289 344 253 46.0 5e-67 MKKGNLFRRFSAVFMLVLMTVVSAGCKSPIVLDPKGPVGQQQMDLIVISTLLCLVIIVPV LVITFVIVWRYRDKPDRKAKYTPNWEHSTKLETIWWGIPILIILALGIVTVRYTHALEPS KPLAAEKEVKPITIQVTSLDWKWLFKYPEQGIATVNYVQFPEDVPVRFELTSDAPMNSFW IPQLGGQIYTMSGMAMKLNLMADEPGEYMGSGANFSGKDFGKMRFVAKATTQADFDSWVK EIKGSSPELTLDGYKKLAEPGVSEVQSFSKFPEGLFEKIVTRYSPSHNHGGFGAPVPAKP SAGTESGTSDKAAGNSSTEGSGAVKQEASAAHTGHE >gi|333601589|gb|AFDH01000148.1| GENE 5 4503 - 6473 1959 656 aa, chain + ## HITS:1 COG:BS_qoxB KEGG:ns NR:ns ## COG: BS_qoxB COG0843 # Protein_GI_number: 16080867 # Func_class: C Energy production and conversion # Function: Heme/copper-type cytochrome/quinol oxidases, subunit 1 # Organism: Bacillus subtilis # 12 649 8 644 649 776 62.0 0 MLDKIKDFASTFFVTGDPLIYGADVSIALATIAIIFVLTYFKKWTWLWREWLTTVDHKRV GIMYIIASILMLFRGGVDALLMRTQLAMPDMEFLQPEHYNQIFTTHGVIMILFMAMPLMF GLFNIAVPLQIGARDVAFPFLNALSFWLFFFGAMLFNMSFVIGGSPDAGWLAYPPLSELS HSPGVGQNFYIWGIQISGIGSLMTGINFIVTILKMRAPGMKLMKMPMFSWSVLSSCIAII FAFPILTVTLALLFLDRFMGAHFFTLDGGGNPMMYINLIWMWGHPEVYIVVLPAFGIFSE VVATFAKKKLFGYKSMVFAMMIISVLSFFTWAHHFFTMGSGANVNAFFAITTMIIAIPTG VKVFNWLFTMYRGKIRFDTPMLWTIGFIPCFIVGGMTGVLLSVAPADFQFHNSYFLIAHF HQVLIGGVAFGYFAGLYYWWPKIFGFKLNEKLGKWAFWLWNIGFYVCFMPQYFLGLDGMT RRLSTYGWDSGWYGLNLTSTIGGFLMGIGFIFQVWQIAHSIKFMERDTTGDPWDGRTLEW SIPSPAPLYNFATIPTASVQDPYWEEKQRLEQGGKPAPKAKLEPIHMPKNSAIPFIKSLC WFIAGFGFVFGWMFFAIPGMIGVAVCMLAHSFNYDTDYYIPVDEIERTEAAARGSV >gi|333601589|gb|AFDH01000148.1| GENE 6 6474 - 7103 559 209 aa, chain + ## HITS:1 COG:cyoC KEGG:ns NR:ns ## COG: cyoC COG1845 # Protein_GI_number: 16128415 # Func_class: C Energy production and conversion # Function: Heme/copper-type cytochrome/quinol oxidase, subunit 3 # Organism: Escherichia coli K12 # 11 209 6 204 204 204 53.0 1e-52 MAQASSPKKAMSHQHDHSHDDGHHDLESLRMFGFWIFLITDVILFGTLFATYIVLHGNTN GGPTPAELFEMPGIIAETFILLTSSFTSGLAVLAMNKGNRKGLIGWLAVTALLGASFITL EVTEFVKMVHEGATISTSGFLSGFFTLVGTHGIHVSVGLVWMIALMIQLSRHGINSVTRR KVNIISLYWHFLDVVWIFVFTFVYLMGVM >gi|333601589|gb|AFDH01000148.1| GENE 7 7105 - 7449 444 114 aa, chain + ## HITS:1 COG:BMEI1898 KEGG:ns NR:ns ## COG: BMEI1898 COG3125 # Protein_GI_number: 17988181 # Func_class: C Energy production and conversion # Function: Heme/copper-type cytochrome/quinol oxidase, subunit 4 # Organism: Brucella melitensis # 11 109 31 129 148 70 36.0 1e-12 MAQHTTHSGGAHDHEHHESHGSLKSYVIGFLLSIVLTIIPLVVILNKMVTGKAAILVLLI TAVLQFAVQLLFFMHLTDEKGPRYNLLTLILGLVILTTIVAGSIWIMTYNTVAH >gi|333601589|gb|AFDH01000148.1| GENE 8 8715 - 10631 1565 638 aa, chain + ## HITS:1 COG:PAB0469 KEGG:ns NR:ns ## COG: PAB0469 COG0018 # Protein_GI_number: 14520895 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Arginyl-tRNA synthetase # Organism: Pyrococcus abyssi # 4 638 3 625 625 305 33.0 2e-82 MISTQLSDEIERQVRKLLDETGTPWPAGIKVLVDKPAHPEHGEYSTNVAMLLAKTLKKSP LEIAKKLKMELEHSGIAEGIFSKVEAAPPGFLNFAIDWSAWMNRHREYSAYAGDGGKGKV MIEHTSINPNKSAHIGHLRNSCIGDTLARLLSRAGREVEIHNYIDDLGNQLADTVVGILH TKTEGKHVCFGDFCWDTYAKVNRMYKEEPGLQEERTRVLHELEEGTSSTAWIGRLTAEKI VREQLHEMKAFGIGYDVLVWESRIVAEGLWEAAFEHLQATEAFYKVEEGKLAGCWVLRHG GERSGEAEGASNPEPEAHQADKVLVRSNGILTYTAKDIAYHLWKFGLLSQDFTYMPFAEG VWSTDSQGYAMPYGRGETVINVIDYRQEYPQTMVKLALEALGYKEQAARLLHVSYGVVSL SPETAESLGVDTSAGKGSYAMSGRQGVGIKVAELLHVMEESIESKRSRQEGLSSREIAAA AIRYYLLKYHLQTEVVFDLRQATEVSGNSGVYLLYAYARAGSVLEKAAAGQMGSGKALME PPVPSVDGGALEPPERQLLKQIAYWTETMDAAVRQLAPNLICSYAFELSLLFNNFYGACP ILKGPVDRVELRVWLTWKFRETLGKALDVLGLPAPERM >gi|333601589|gb|AFDH01000148.1| GENE 9 10785 - 11723 815 312 aa, chain - ## HITS:1 COG:BH2877 KEGG:ns NR:ns ## COG: BH2877 COG1686 # Protein_GI_number: 15615440 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanyl-D-alanine carboxypeptidase # Organism: Bacillus halodurans # 44 303 33 276 395 149 34.0 6e-36 MKLKSTLLGLTAAVVALTLVSDPLHVIKPHAAAAISTLRSGLLGESGSPLTSSVEGEAAI LMDADTGKVLFEKQKDSRLYPASTTKIVSAMVALEKGGAKDRITVGDEIRLKTTGESTAG LWEGQRLSLEDLIAAMMLPSGNDAARTVARYIAEKDSGRKLSAEEGIAYFAGLMNEKAAA VGAKRSHFTNPHGLHDPKHYTTAGDMALLAREAMKNKVFRSIVDQPRHTVASAGHSQTFV NRNQLLQEGGAYYFKGVNGVKTGFTDEAGYCLVSSADLDGKNLITVVLRSSSGGVYTDTH ALLKLAVNKEAA >gi|333601589|gb|AFDH01000148.1| GENE 10 11916 - 13052 1073 378 aa, chain - ## HITS:1 COG:lin2515 KEGG:ns NR:ns ## COG: lin2515 COG0642 # Protein_GI_number: 16801577 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 63 360 84 377 380 237 43.0 3e-62 MKTNWSRALLYSLGSSLLVLLLIFLLGRTLFYSYLSERISLENILIWINYRIGYPEAYIQ AGLIIFLLFFIYFYRLEQRHRDKRTLAQIIENMQKITDGDFNHRVPAGGSGELGQLAVHV NRLVDRLKLSLEEERQAEQAKNDLITNVSHDLRTPLTSITGYLGLVDQDRYRDEVELRHY IGMAYEESQRLNQLVQDLFEYTRLRNKEMKLQLVKIDLVEMLHQIFSAFQLQLKEANMDT RMTFEQPRLYVLADGNKLRRVFENLITNAIKYGHDGAYLDVTGRIEGSEIVLSLTNYGES IPAPDLPRIFERFYRVEKSRTKHLGGSGIGLAIAKQIIDLHGGTIEAYSDPEETVFTVRL RTLNPDSPPPSSVRSGSF >gi|333601589|gb|AFDH01000148.1| GENE 11 13042 - 13737 715 231 aa, chain - ## HITS:1 COG:CAC0830 KEGG:ns NR:ns ## COG: CAC0830 COG0745 # Protein_GI_number: 15894117 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Clostridium acetobutylicum # 5 230 4 229 229 246 55.0 2e-65 MDKHILIVDDDDKIAQLIEIYLQNEGYTVYKADNGLTALEIMAAQTVHLVILDIMMPGMD GLQVCMKIREKQMTPILMISAKDGDLDKITGLMTGADDYVVKPFNPLELIARVKSLLRRA YFQAQASVPAEEHTTRIGSLLIDKQTHTVTANGRLVKLTPIEFGILSLLATHPGRVFSSE EIFEKIWKEKYFESTNSVTVHISRLRDKLEKEMEGEKLIHTIWGVGYKLEN >gi|333601589|gb|AFDH01000148.1| GENE 12 13921 - 14889 889 322 aa, chain - ## HITS:1 COG:BH1448 KEGG:ns NR:ns ## COG: BH1448 COG0225 # Protein_GI_number: 15614011 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptide methionine sulfoxide reductase # Organism: Bacillus halodurans # 10 177 8 175 179 255 72.0 9e-68 MSLENKSSELATFAGGCFWCMVKPFDEQPGILKVESGYTGGHLENPTYEQVCSDTTGHYE AVQITFDPAVFSYERLLQVFWQQIDPTDAGGQFNDRGQSYQTAIFYHSEEQKAAAEKSKS DLARSGRFDKPIATEILPAKPFYPAEEYHQGYYKKNPLRYKAYSVGSGRAAFLKNTWKDH AKDQDLKKRLTPMQYEVTQNSGTEPPFRNEFWDHKEEGLYVDIVSGEPLFSSLDKFDSSC GWPSFTQPLQGEQVTEHVDLTHNMVRTEVRSKEADSHLGHVFEDGPGPNGLRYCINSAAL RFIPKNKLEEEGYGDYLKLFSK >gi|333601589|gb|AFDH01000148.1| GENE 13 15121 - 15678 590 185 aa, chain + ## HITS:1 COG:APE2080 KEGG:ns NR:ns ## COG: APE2080 COG1051 # Protein_GI_number: 14601829 # Func_class: F Nucleotide transport and metabolism # Function: ADP-ribose pyrophosphatase # Organism: Aeropyrum pernix # 35 157 26 153 175 79 36.0 4e-15 MEANYCMTCGTPLETRDMDGTLRRACPACSFVHWGSYSAGVGALVMREDKLLLVRRAQEP GKGRWTNPGGFIEQLELIHETIAREVLEETGIEASVKKVVAFRDMPKSIHNIYIAFAMDY VSGEPVPDDHEVDAAGFYSLEEMETMNVAPFTRWLADVAWNGRGGGLVIDTDPVVPLDGY GLFRV >gi|333601589|gb|AFDH01000148.1| GENE 14 16092 - 17609 1641 505 aa, chain + ## HITS:1 COG:BH0916_1 KEGG:ns NR:ns ## COG: BH0916_1 COG3325 # Protein_GI_number: 15613479 # Func_class: G Carbohydrate transport and metabolism # Function: Chitinase # Organism: Bacillus halodurans # 146 503 40 445 450 380 47.0 1e-105 MKKWKPSLLTALTLGLALGAVPAMGASSAGDISIAYGSRVAVQQQKPVLQGDALTVPAEE LAKQLQLKLSPLKEDGTFTLSKTGVFIEMKLGSKEARVNNQLANLQAAPAKQGDTLYVPL RFVSEASRSLVEWDQARRMAIVSPTYKVVGYFTSWGKLKASEIDASKLTHINYAFANIVD GEVALSSPKDQEEAYPGACKGEDCAKFVSDFKELAKLKQANPHLQTLVSVGGWTWSGRFS DAALTEASRTKFADSAVRFIRENGFDGVDLDWEYPVTGGLETNVRRPEDRTNFTLLLHTI REKLEAAGREDGRHYLLTIASGANPNYVRDTELDKVAEAIDFVNIMTYDLHGSWEPTSNN NAALYYDPADPDPNAHRFYAEAAVNGHLNAGVPAKKLVLGIPFYGRSWGGCEAVNNGLYQ ACKGGDVVDWTEKPEGFQRYWNDRAKVPYLYNKQTGQFVSYEDEESIGYRAEFIKEKGLG GAMFWELNGDPDGKLLPRLAESLDR >gi|333601589|gb|AFDH01000148.1| GENE 15 17972 - 19114 967 380 aa, chain + ## HITS:1 COG:CAC3027 KEGG:ns NR:ns ## COG: CAC3027 COG1408 # Protein_GI_number: 15896279 # Func_class: R General function prediction only # Function: Predicted phosphohydrolases # Organism: Clostridium acetobutylicum # 15 376 21 390 392 218 31.0 2e-56 MKSRLVLLVLALLVYVGLNLYIGWHGERFLDFWGISVPAGIYWTLLAILALAYMLGRSPV VPGPPGRLLKVIGSYYFAVLEFAVILLPLGDLAAWLLKLAGFPPAVYFGGTGSVVLVILI VLLAKGYWNAWTPIVRTYRARVGKRAGRLRQLRVAVASDIHLGNIVGKRHLARLVKAVDA MKPDLILLPGDLIDDSIEPYIRNGMSEVMKRLQAKYGVYAVLGNHEYYGGHIEEHVRQME SIGIRVLRDETVSVEDAFYIAGRKDKTAESFETGGRMAVDQLLSGLDHSKPILLMDHQPY HFAKAAAAGADVLLCGHTHRGQFAPNHWITGRLFELDWGYMLKEKMHVVVSSGFGTWGPP IRIASRSEVIELILDFEEAE >gi|333601589|gb|AFDH01000148.1| GENE 16 19181 - 20173 928 330 aa, chain + ## HITS:1 COG:CAC0697 KEGG:ns NR:ns ## COG: CAC0697 COG2017 # Protein_GI_number: 15893985 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose mutarotase and related enzymes # Organism: Clostridium acetobutylicum # 15 330 18 338 340 220 33.0 3e-57 MTHNRAYESNYQGMKAVRLEWGAYEAVMLPDYGGNLIAFRDTDNGYRFLHEPAEEELESF KANPGIHGIPVLFPPNRYEDGKFPWNGKVLRFPINEEATGNHLHGFLHKIPWQVDEYGTT ESESFVSVSVRVDEAHEVYKFLPFRFTIRLRYSLSADGLAQHLFIRNEGGERMPCLLAFH TSVNAPFAPDASAKDYRVKLTIGKRWEMNDRMLPTGRQQALTREEEQLRDEGIYPFYEPL DNHYTVSARNGRNRMELTDTKRNVTLVYDVGTSYKQWMIWNHFGEEGFFCPEPQVNLVNA PNSPLPAEEIGLFGLDPGEIWEETGRLYVK >gi|333601589|gb|AFDH01000148.1| GENE 17 20263 - 20949 742 228 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_1819 NR:ns ## KEGG: Pjdr2_1819 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 25 221 8 205 208 157 44.0 2e-37 MTTPNESGDQPIEAQATEEEQLSPEEQAAKEQQEQQQQNEIIFAWYKHAEQVLKEQFSDY EVEGQVGQHPVFGPLFAYTVRQNDNSYSCGFFLNELVHTFQNKENPGLWMSSFFVDLIRS SDNRPLPAAPQSEEEAKELLDKYIVPHCAESVRSEFPEEQIYVDLEMHSEAGPVLEVGFP SIKEGNNTFALPLQFLMTLHLLNRDPADPLVQALYKIHEEHQQQAEHT >gi|333601589|gb|AFDH01000148.1| GENE 18 21075 - 22004 762 309 aa, chain - ## HITS:1 COG:BS_ybfP KEGG:ns NR:ns ## COG: BS_ybfP COG2207 # Protein_GI_number: 16077301 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Bacillus subtilis # 7 306 3 292 295 291 51.0 9e-79 MVQAVVYSETVNRTLSYIEAHLKEELNLEILAERAAFSMYHFHRIFQAQVGMPPADYIRR RRLSSAACSLLGTERRILDIALEYRFDSQESFTRSFKRMFLMTPGQYRSYYRTLTMQKES EAEMAEQTERINDLQGEPRGWMLTGTHSGDYEMGIDRLVVHHGKSSGYLRSLTERAFGFG TMMQMFKADAYSGTRLRLSGFVKTEQVNDWCGLWLRIDGKDHDVLGFDNMSGRPIRGTTD WSRYSLVLDVPKESVAIAFGVLLNGSGRVWIDSLQFDTVSLQVPVTNLEEIAALPDAPVN LNFEEEPGL >gi|333601589|gb|AFDH01000148.1| GENE 19 22078 - 22806 430 242 aa, chain - ## HITS:1 COG:CAP0036 KEGG:ns NR:ns ## COG: CAP0036 COG1664 # Protein_GI_number: 15004740 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Integral membrane protein CcmA involved in cell shape determination # Organism: Clostridium acetobutylicum # 9 231 6 230 242 161 44.0 1e-39 MEAQPNITNDLSISGSGSADGGRYRNARINGNGRIDGDLECRSYKSAGHSHVYGSLAARE VIIRGSGSVSGNVRSELVSVSGNGEFRGDVAGRQFKVNGSAGIGGSLTADTAVIRGSVQI NGDCEAEKFEAYGGFEVGGLLNAGIIDIRLFGPCRAREIGGESIQVKKNGFLNSLASLFG SKLTSLEAGIIEGDVIYLEHTSASVVRGRDVKIGPGCEIGRVEYTNTLYVDNHSTVAERQ QL >gi|333601589|gb|AFDH01000148.1| GENE 20 22809 - 23441 475 210 aa, chain - ## HITS:1 COG:no KEGG:BBR47_55250 NR:ns ## KEGG: BBR47_55250 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 5 205 8 208 210 224 56.0 1e-57 MTQELISKKDLLELTGISYGQLYRWKRKNLIPEAWFIRKSTFTGQETFFPKKEILVRIDN ILHQKDDLSLDELADRFSPRPSDLSMTKEELILHNIVSKVALDYFVRLSRDAEVWTFERI FAVYVLHTLLETGEISLEEGSGLIQLMTDQYPNMSDSDGELLFIRKMGVSTCFLKQGTGE IYLEKGVKVAARLQLSSSVEALKTKIWREA >gi|333601589|gb|AFDH01000148.1| GENE 21 23724 - 24773 1214 349 aa, chain + ## HITS:1 COG:PA3445 KEGG:ns NR:ns ## COG: PA3445 COG0715 # Protein_GI_number: 15598641 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components # Organism: Pseudomonas aeruginosa # 38 344 8 316 323 215 40.0 8e-56 MTTISGWLKRSARTKARLAALMLTAAVVLSACSSGGDKGAAATTPNEAKSAVSGDSKVVR IGYQKGNTLNILKEHGNLEKRLKEKNITVEWKVFAGGNFLLEALTAGSIDFGHAADGSGV FAQAGGKPFVYVGSDLPNPEGMGIVVHAGSPVKTVADLKGKKIAVAKGGNHHYLAVLALE KAGLKLDDVKFVFVKDASEGRALFETKQVDALGSWDPFFASVENDLSPVTLTDGTGYSPN RTFYYANETFAKGNAELIQTILEEIDVSDKWANTNKPEVVKQLTEALGIDQKAIERAVNR RTYGVENLSPEIIEPQQKLADTFHRIGLIGDKIHVAPLMPTQQAWAIGK >gi|333601589|gb|AFDH01000148.1| GENE 22 24805 - 25608 886 267 aa, chain + ## HITS:1 COG:AGl1398 KEGG:ns NR:ns ## COG: AGl1398 COG0600 # Protein_GI_number: 15890822 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type nitrate/sulfonate/bicarbonate transport system, permease component # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 23 266 16 259 260 274 59.0 1e-73 MSVSIQQADTRRRDTWAAALLPWLLPALILAGWHMAAVYGPVSQRLFPPPLEVARSGWKL LSSGQLTYHLGVSLGRAAAGFVIGGGIGLLLGAANGLFVTSYRMFDTSIQMIRNIPHLAL VPLVILWMGIDEGAKVFLVSLGVLFPVYVNTFHGIRSIDRGYLEMGGVYGLTSWQLFRHV ILPGALPSVFVGIRYGLGIMWLTLIVAETIATDKGIGYLALNAREFMQADIIILSILLYA LLGKLADVIAKWLEHTVLKWNVSYRKA >gi|333601589|gb|AFDH01000148.1| GENE 23 25634 - 26560 722 308 aa, chain + ## HITS:1 COG:YPO3627 KEGG:ns NR:ns ## COG: YPO3627 COG1116 # Protein_GI_number: 16123769 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component # Organism: Yersinia pestis # 39 277 10 248 271 258 59.0 8e-69 MSGWSQLAEEALYTEALAGDKRRAVSGDDAGQSGERLFGASVRLQGVHKSFGGKKVLHEL DLTIRPGQFIAVAGRSGSGKSTLLRLLAGLEKPAEGRIEIDGRPVSGIGRDITVMFQEAR LLPWKTVLDNVGIGLSGNWRPRALHVLGQVGLTDRAGDWPGVLSGGQKQRVALARALVRQ PKLLLLDEPLSALDALTRLEMQQLIGTLWQRHGFTTLLVTHDVSEAVRLADRILLIEDGK IALDADNPVPWPRDQANPEFAGLEKRVLERIMQTNGGTADESISVQLRPNSGRAGASRGD RPAGRHFA >gi|333601589|gb|AFDH01000148.1| GENE 24 26472 - 27674 1042 400 aa, chain + ## HITS:1 COG:BS_ydbM KEGG:ns NR:ns ## COG: BS_ydbM COG1960 # Protein_GI_number: 16077519 # Func_class: I Lipid transport and metabolism # Function: Acyl-CoA dehydrogenases # Organism: Bacillus subtilis # 8 386 4 378 381 328 47.0 1e-89 MNPSPFSFARTAEERERLEGIGRLADTLRDEAARADEENGFSYGAIDALKEARYPSLTVP AEYGGAGASLYEFVLLQERLAQGDAAIALGIGWHLGIVLELANQPAWQDKYEALCRDIAS RNLLINRAATEKGTGSPSRGGRPATTAADVKGGYLLNGRKTFTTLAPALDLVIVTASLEP DGSHGEFVFPVATEGVRIEPTWDMVGMRGTASHDLVLEDVLVPAEARVKHTRSEPSRPGP AAHPYLLHIPACYLGIALAARREAVSFAAAYRPNSLPHPILELPHIRQLIGEIELELSAA RHFLYAVAQRWESAPANPGAFAADLSAVKTFAVRTALTVVDKSMRIAGAHSLAMTHPLQR LYRDVRFGLHNPPMDDVTLKQLADRAERELLQPPEGTAEA >gi|333601589|gb|AFDH01000148.1| GENE 25 28204 - 29436 508 410 aa, chain + ## HITS:1 COG:CAC3430 KEGG:ns NR:ns ## COG: CAC3430 COG4585 # Protein_GI_number: 15896671 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Clostridium acetobutylicum # 23 400 11 387 397 230 34.0 4e-60 MKYKHPSQNGSKSMPVEMPNAWIDARNRTVVWLALVYFSIVLIQWTTRFQWIPSLFFTGL YLFHGSLYWHSDSFTKKHPWVYLVLQGLLVLWFVWFMPIAWTILILGLFPVLMGQSAVIY HQNTKVAFACIYYHILAFFIIVKVNELPALVVFAPLLLLLNLIVTSYTRMFQREVYGRVY TQNFLRDLESAHQKVEELTLANERQRIARDLHDTLAQGLAGVLMQIEAIDAHLSKSNVER AQQILRQCRETARKTLAEARSAIDGLRLRSSNAIEFSDSVREEADGFSSATGIPVELHVE LLPHISKLMTEHVLQIVKECLMNIARHAEASRIGISISRAEDRIVIEIRDNGKGFDPAAI GRQLGHYGLIGMKERVRILGGVLDISSASQQGTIVRLELPEKREEVKREL >gi|333601589|gb|AFDH01000148.1| GENE 26 29426 - 30067 601 213 aa, chain + ## HITS:1 COG:CAC3429 KEGG:ns NR:ns ## COG: CAC3429 COG2197 # Protein_GI_number: 15896670 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Clostridium acetobutylicum # 4 213 5 213 217 238 59.0 7e-63 MSCKIMIVDDHYVVREGLKLILETCDDYEVTGEAADGAAALRLLEELSPDVILMDLNMPV MGGLEMMEQMKERGIDIPVVILTTYNEDELMINGLALGAKGYLLKDTGRDHLFRTIDSAM RGETLLQPEITARVFAIKQTKETPVRSAGTAILSDKERIVLQAVVQGLRSKEIALDMGIS ERTVKAHLTSIYNKLGVDSRSQAVAIAVEQGYI >gi|333601589|gb|AFDH01000148.1| GENE 27 30176 - 32380 1372 734 aa, chain + ## HITS:1 COG:BS_ydfJ KEGG:ns NR:ns ## COG: BS_ydfJ COG2409 # Protein_GI_number: 16077610 # Func_class: R General function prediction only # Function: Predicted drug exporters of the RND superfamily # Organism: Bacillus subtilis # 1 720 1 709 724 649 50.0 0 MAKLLYRIGRWAAGKPKSVFIGGLAVLLITALMGLRMGAVFTGDMSIPGTKSEQAATVIG EKFHTSGAAENGTVQIIFKAPDGQTLETESMRQIVKQTLDAISKDESIASVASPYNAGTI SQTKEIGYANVTYRSQAEDVTEASKEMVLSSVEQARAHGVQTEIGGSVSFESLEIGGGSE IVGLAIAFLILIFMFRSILAAGFTIVTALIGLGIGIMGIIVASNYVDMSSVSLTLAVMLG LAVGIDYGLFIISRHRQNMSEGRSVHESIAIATGTAGSAVVFAGCTVIIALVGLAVTNIP FITMMGLAAALTVFTAVLVAIFIVPAVLGMLGERIRPKSAPDMPLKKPKPTANAESNAWG RFVQKFPLPTALAGILVLAFISLPALHLQTGLPDNSLKSEETTGRRGYELIAEGFGPGYQ AQLVVVMQAKTADHAKADIASAREALGKLDNVVMATEPVMSPDGDTAIITVLPGTGPHDL KTADLVYDVRKLSDETMRQNHVELMVTGSTAVNIDITDKLNQALPVFASLVVGLALILLV MVFRSILVPLKALLGYLLTLAATLGFVVFVVQDGHMAGLFGIPEPGPVLNFLPLLVAAIL FGLAMDYEVFLVSRMREKFIHSGDAKKAVLFGLKSSGSVVTAAGLIMISVFASFIFAEDT MIKSMGLALAFGILFDAFIVRMTIVPAVMTLMGRSAWYLPKWLNRILPNIDVEGESIVNK QEADGILQDRMMRS >gi|333601589|gb|AFDH01000148.1| GENE 28 32596 - 32889 73 97 aa, chain + ## HITS:1 COG:BS_bsaA KEGG:ns NR:ns ## COG: BS_bsaA COG0386 # Protein_GI_number: 16079249 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutathione peroxidase # Organism: Bacillus subtilis # 1 95 1 95 160 119 53.0 2e-27 MSIFDLQVNTITGKLITLSNYRGKVLLIVNTASRCSYSRQFAGLQRLYESHTEQGFEILG FPCNQFNEKEPGNNSEVQEYCESNFRVRFPLFEKMGG >gi|333601589|gb|AFDH01000148.1| GENE 29 33192 - 33344 87 50 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTSKQQLTTFQHKPSAQFFAVTYDTVPHVVCNGKFLGHTFRNGPFFVEYD >gi|333601589|gb|AFDH01000148.1| GENE 30 33787 - 35694 212 635 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 394 617 132 355 398 86 29 4e-16 MPNPKSPDAKAPRGSASAGSAGQNCAGAGQTADTAKNNGASEPKEGPRPGRLAAFKATLT YAKPHKLTFIGIFFCSLIAIIAELLQPYLVKIAIDDHLFGGSGAMRPLLIIGLFYLGLSV VNFAFTYVQNNLLQYAGQSIVASIRKNLFAHISKLSMSFFDRYPIGSLVTLESSDTETIS QFFTQVFLSLVRDGMTLVLIIVFMFQLDATLAWYSMLLLPVIAVIAVLFRSMLRKAYQET RAQLSRLIAYLAENLAGMSLIQTYNQQDEQFGRFSDRNGQYLKANLKEIRTNVLFNRSFD IFGNISVALLVWLGGLAFLGGSIEFGVLYAFITYIRQFFQPINQITQQWNTLQSASVSME RLWNILSTEPDVKEPADEDKTEVDWKKTAGKIDYNHVDFSYVEGSKVLRNLDLHIKPGEM IGIVGTTGAGKSSLISLLTRFYDVNAGSVTIDGTDIRRIPQDTLHRMIGLVQQEPYLYSG TILDNVRLFRQEISRDEVTAACKAVGAHPLITRLKDGYDTRLSERGSGLSAGERQLLSFA RILVFKPRILILDEATANLDSHTEQLVQKALSVVSEGRTALLIAHRLSTIMHADRIIVMK HGEIVEEGTHRQLLAKKGYYEELYRHSQGMQAIGS >gi|333601589|gb|AFDH01000148.1| GENE 31 35687 - 37432 236 581 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 322 562 115 353 398 95 29 7e-19 MGSQRLLRNYVKANLGLYSVGVAFIILSNVVQSFFPRVLGEFTDDLQLKVATSHTVASYG MQLLGIGVAYGVLFGIGQYTNARLGRRFEYATRQKLFRHFSTLSEHYFSRHGVGKLLSYV MNDVTAVRESISNGVNQTTNAIFFILSAFVMMSFSSIPFGLIALSLAPMAFIPFIVVFLG PRIRSRSLEVQESLATMTESAEEQFGGIRVTKTFAAEEIAYERFGRNVDAIREKQLRLVR MSSLFQSLLPLMGSFSMIIAILAGGYMTLHGQITLGSFVSLTFYLRMMMTPLQQIGNVIN MMQRSRASLERLNHLLAVKPDIREEAKAEQLENGAGELDIRGLSFRYPGSDRRALEAIDL KVEPGRTLGIIGRTGSGKTTLVKLLLRIYDPPAGTIFIAGHDIRRVTLESLRSQIAYVPQ DGFLFSTTIRDNIAFSRRDAADDEMQQAAREAQIYSSITELPRGFETKLGERGITLSGGQ RQRASLARGFMKQAPILILDDSVSAVDAVTETNIVRQIRAAHRDKTTLIIAHRISAVKHA DEIVVLDEGRIVQRGTHKELLARPGLYASLYQIQEEGTRHA >gi|333601589|gb|AFDH01000148.1| GENE 32 37955 - 39172 1068 405 aa, chain - ## HITS:1 COG:BH1491 KEGG:ns NR:ns ## COG: BH1491 COG1404 # Protein_GI_number: 15614054 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Subtilisin-like serine proteases # Organism: Bacillus halodurans # 91 405 285 584 588 221 38.0 2e-57 MTTLITVLAFIAAAAVVFFIFHQKELPKEPHQPCQLIVKFKPDTPEEFIAKLHKKYKCKV LETCSTLGHQVLFTKQPLRKTIKRYEKHEVLEYAELNYRYQAFESAPSGGKKQGKGQSSS DVNVFAIPNDPYFSLYQYGPQKISAPSAWDVAQSASSVVIAVLDTGVELTHPDLAAHLVP GYDYVDNDSNPSDGNGHGTHVAGIAAAVTNNGIGIAGVAPLASIQPVRVLDNSGSGTVSN ISNAIIYASFFGAKVINLSLGSPYSSTTLQYALDYAWGKGSVIVASAGNDGSTTPNYPAA YSTVISVASTDSADNISSFSNRGSWVQVAAPGTTILSTFPGSSYAYLSGTSMSAPHVSGV AALLAGQGRTNAQIRDAILFNADPIFGTGTYWVYGRVNADRAVRS >gi|333601589|gb|AFDH01000148.1| GENE 33 39389 - 40636 1228 415 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|304405699|ref|ZP_07387357.1| ## NR: gi|304405699|ref|ZP_07387357.1| hypothetical protein PaecuDRAFT_2022 [Paenibacillus curdlanolyticus YK9] hypothetical protein PaecuDRAFT_2022 [Paenibacillus curdlanolyticus YK9] # 1 386 1 387 391 303 48.0 2e-80 MSTNIRKMLIMNFVSSIIFIYIGIFVNLYIWQANTSIFEISWFNMVMFFGWGFSFVLGAK LLYHRTIRLLLALSAFGGAAAFIMLTFLTLENRILWIALIGFPVGLMWGFYTVAQNLSVS FSGKGTEIASFFAANNLIASILSMVIPIISAQFIGWFGYESSFVLMFVFLIVMLVFSATM PRIALPRTETPGLGFWRQLQWKRVFGDRHSVWLILSILAGGVFLQFQNLFTLVFTFTVTQ DKLLIALLNLLYTGAAFLGLILYRKFKWNDQFCLWLGVLLLSAGFVIAMFPLKPLLILSN VLTAFGMFFFAMIWNAQQFQCIEDYAPGRKAAFLIWRESMLVGMRIVLLVFIMSLDKLEG WLYISIIGVTLVSLISIPVVQAKAVRLMADGRKKREGAEPLREEGNPPRPPTFSA >gi|333601589|gb|AFDH01000148.1| GENE 34 40839 - 41096 386 85 aa, chain + ## HITS:1 COG:CC0448_2 KEGG:ns NR:ns ## COG: CC0448_2 COG1925 # Protein_GI_number: 16124703 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, HPr-related proteins # Organism: Caulobacter vibrioides # 12 81 3 72 112 62 44.0 2e-10 MEKEFSVQNPLGIHSRPAGALMKKAKAFTCDITIAKGDKSVNAKSIVGLLSLEMRYGDKV TVKASGEQEEEAVNELGTMLESVLE >gi|333601589|gb|AFDH01000148.1| GENE 35 41105 - 42859 2003 584 aa, chain + ## HITS:1 COG:BH3073 KEGG:ns NR:ns ## COG: BH3073 COG1080 # Protein_GI_number: 15615635 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) # Organism: Bacillus halodurans # 10 571 5 564 572 566 51.0 1e-161 MIEERETASVKGIAAAPGYAMGKAHLWQPQAEKAPRRTLAEEETAAEVARLEEKTREALD ELQCLKEETALKLGEAHAEIFETHMLLLEDDDFVGAAADAVRSERLNAEAAVEDAAKALV ELFENMSDAYMRERASDIRDVAGRLQRLLRGESAGDMGGGGEAVVLFAHDLTPSDTARLD RSRIAGFVTAVGGRTSHSAIMARSLEIPAVVGMGAGAARVQPGDYVIVDGGEGTVHINPD AGLLELYRSKQVRYEERRSRLGAYIGRPTETADGHHVELAANIGSPQDAQAARDGGAEGI GLYRTEFLYMGRDTMPTEEEQFLAYKIVAEMFAGQPVVIRTLDIGGDKELPYLSLPKEAN PFLGYRAIRLCLDRKDLFLTQLRAILRASAYGNVKIMYPMISNIEELRQANAVLADAKAG LDAEGIKYAQDIEVGIMIEVPAAGMAADQLAREADFFSIGTNDLVQYMMAADRMNETIAH LSEPFNPGVLRLIRHVIRAAHEKGRWVGMCGEMAGSVIAIPLLLGMGLDEFSMGSGSVAT ARALMHKLNRSELSLLADEALELDTAEEIRRHIISRVPAVAEWL >gi|333601589|gb|AFDH01000148.1| GENE 36 43057 - 44979 1484 640 aa, chain + ## HITS:1 COG:BS_yjdC_1 KEGG:ns NR:ns ## COG: BS_yjdC_1 COG3711 # Protein_GI_number: 16078265 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Bacillus subtilis # 21 520 23 499 510 145 28.0 2e-34 MTLTTRSRALLKKIVYSHSPLRIKECAEEFQVSERTVKYDLESIRLWLQQEQIELLSKPS RGIWIDCSDTDRIHLLEKLDAVGEHVFLNQQGRMRHMLIDLLLLDGYLTIGELVVKHDVS RNTVQADLALADQLLADSGLTLNRTRHGIRVSGSEMRRRAVLEHVIQDLLDGNDMFQIVQ GVVQERRPHLHFSKLLEWFLQPVRDLDRVFEDVGSLVREIREKTQLLLTDNAIIGVFIRL CIVIQRQRPAEEQPAADSGERPAAFDQRTLAGYHLSISDLFRQKLTGLFAELELPLSEEN IRYVSLPAIGLIPPLLEARDEEGAQLPDAFAVTKKLIDKVSESVHVRFRKDPDLMQHLHA HIADKLNKYSYGVAEPNPLLQEILRSYRTMFETVRSACGEVFSPYGILLSDSDIAYIVLH FQAAFERRQEVQRYRALVVCGTGRGTSKLLKTVIENEIKTLQVAAFCSVMEFDKQVVGDF DLVISIFPIEAHVPVVVVNPIPDKNDFKSIRLRLETLEKHGGAEGASAGRSSSLQRPELS YLEQKFQDIIWRGFELSRAIRTRFAPYLNEERLEGLTLHLLFMMNRIAFDTAYIQTGSAP SAEGAEGELAEELKMLLSEHRIHATEGEVMAILRYFERSA >gi|333601589|gb|AFDH01000148.1| GENE 37 44982 - 46121 1028 379 aa, chain + ## HITS:1 COG:STM4445 KEGG:ns NR:ns ## COG: STM4445 COG3964 # Protein_GI_number: 16767691 # Func_class: R General function prediction only # Function: Predicted amidohydrolase # Organism: Salmonella typhimurium LT2 # 4 371 3 361 377 261 42.0 1e-69 MKADLLIHGGTVIDPSTGISGAFDVAVSGGKITGVFKPGTAAIEAGQTLDASGSYVSPGF IDIHTHIYEGVPAMGVAPDRVGIDQGVTTVVDAGSSGAANFDDFVRRSIEPSKSRVYAWL NISAPGLVEGRSELADLTKLDPKEVLAVIDRNRDRIIGIKARMSGSVVKTSGIRPLQIAK DTAREAGLPVMVHIGNAPPQLGDVLDLLEAGDVVTHAFHGKAGGILSPDGGPIPQAVRAL ERGVLFDVGHGSSSFSFDTMVKAKELGIDPYSISTDLYLENLERGPVYSLALTMTKLLAM GYSLEQVVAWSTVAPAKAIQRENEIGTLREGAEADITVFRLVQEPVSLTDSEGKTVQYDQ QLLPQYTLRAGAIHHVQRK >gi|333601589|gb|AFDH01000148.1| GENE 38 46105 - 46470 386 121 aa, chain + ## HITS:1 COG:no KEGG:Tthe_1682 NR:ns ## KEGG: Tthe_1682 # Name: not_defined # Def: hypothetical protein # Organism: T.thermosaccharolyticum # Pathway: not_defined # 3 118 7 122 124 77 37.0 2e-13 MYNVNEVLEEIPQKTETSPEKLEVVKDLLTKLRPMSQEIGLSIPHTKAVIIGIHLLAFLR RVDQDEYLPEIEPEMFEEISAESIDLSKRLFSDYNMPPQRKLDDAEVFFLAVHFEAAKTN L >gi|333601589|gb|AFDH01000148.1| GENE 39 46484 - 46846 485 120 aa, chain + ## HITS:1 COG:no KEGG:Tthe_1681 NR:ns ## KEGG: Tthe_1681 # Name: not_defined # Def: hypothetical protein # Organism: T.thermosaccharolyticum # Pathway: not_defined # 1 116 1 116 125 162 80.0 3e-39 MEKVKVVIGDRLGKGQNVAKGVEAAGGVAIVIPGVGADMKLGDMMNKENADFGISFCGSG GAGAVTANTKYKYPMEFGMRSIDAGVTAIREGKKVLGFGFMDVEELGRRLTEEYIKKNGR >gi|333601589|gb|AFDH01000148.1| GENE 40 46850 - 47188 345 112 aa, chain + ## HITS:1 COG:no KEGG:BBR47_31670 NR:ns ## KEGG: BBR47_31670 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 1 112 1 112 112 77 36.0 2e-13 MFQEKPLTLVVSGMSETKQGAFQQALTRMKSQISKETSDVLLQIEPQDVEVVSAHLTQYS EKFLGFLFPRTRTRYEVTLRITVKLKYVNLSEVEFTENKENLSKYQRLLHMR >gi|333601589|gb|AFDH01000148.1| GENE 41 47266 - 48051 832 261 aa, chain + ## HITS:1 COG:no KEGG:BBR47_31660 NR:ns ## KEGG: BBR47_31660 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 1 261 1 261 262 383 81.0 1e-105 MNTLMIVFESIIIGLLVGFGVGAGAARMFHAPNVQGMGAFRTFGELNACEGDAVAHFSFG LGFLFNAWASVVGAGALTQDVDHRIIPHWSAAALLSRNKKLEETLHDPRKMAWAGAIIGA VVVALLNSTAAAIPASLQSVATKVLVPAANWLINPIMPIVFWTAAMDAGKRTGVWATMLG GFSHLVMGNAVPGIVLGILIGKGVDDSGWNRITKTMLVAVILLFIFSGFFRAFDVALLKS MSLTTPQWLIDLHAFFGSVVK >gi|333601589|gb|AFDH01000148.1| GENE 42 48053 - 48703 730 216 aa, chain + ## HITS:1 COG:no KEGG:BBR47_31650 NR:ns ## KEGG: BBR47_31650 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 7 216 23 232 232 265 88.0 1e-69 MENNLQKGFWYSEWAFVLFVACLSSGIFAGTHLYYVYHVGAFNDIAIVAMLEAGLKGGSY GAAAAFGASFLFARILEAPLVGILDIGGSLQTGIGIGVPALMLGAGMTAPLTNFPLALLT GAVLGVAVGAVIVLIRKFTINASNSTFGADVMMGAGNASGRYLGPLIVISAVMASIPVGI GATIGAAIFYYYKKPIAGGAIIGAMILGAIFPIVTK >gi|333601589|gb|AFDH01000148.1| GENE 43 48782 - 49882 1372 366 aa, chain + ## HITS:1 COG:STM4446 KEGG:ns NR:ns ## COG: STM4446 COG1921 # Protein_GI_number: 16767692 # Func_class: E Amino acid transport and metabolism # Function: Selenocysteine synthase [seryl-tRNASer selenium transferase] # Organism: Salmonella typhimurium LT2 # 2 364 3 366 372 266 42.0 4e-71 MSIFERYGCKQVINASGKMTALGASAVHKDVAAAVAEAAMDYVDISELMVQAGKVIAEVT GAEDGCPTTGAAGGIAISVAAVIAGTSLSLIERIPLTDGLRNEIVIQKGHSVHFGASIPQ MIAIGGGKVVEVGQANHVEKDHIAEAVTDKTAALLYVKSHHAVQKGMQSIETMAAIAKDK GIPLIVDAAAEEDFRKYVAMGVEIVVYSGGKALEGPTSGFICGRADLMVACRAQYKGVGR PMKIGKEGIIGLLTALRRYDNRPDESQQQRERMEWLIAELKDVPGVKGAITQDEAGRAIY RAQLTIDAKAAGKTAYELIKELESGSPAVYTRNHYSNLGIISVDPRPLLEGQERVIAQRI KEILQA >gi|333601589|gb|AFDH01000148.1| GENE 44 49927 - 50646 830 239 aa, chain + ## HITS:1 COG:no KEGG:ABC1414 NR:ns ## KEGG: ABC1414 # Name: not_defined # Def: hypothetical protein # Organism: B.clausii # Pathway: not_defined # 8 235 7 233 238 267 60.0 3e-70 MAQPTIKLNVLAKTAENAKQIVEAAEGRVYVGLMVKNFPSVDEAVKTVEEFQAAGVPVSV GLGAGDPAMWSKVVDVSVRTKPAHVNQVFPAAGYTLGAMRAVGSEDTLVNALITPSGTAG QVRIATGPTSVSFENDTISCEAAAAMLAEIGVHSVKFYPIGGTQHLDELAAMVKASVAQG IKIFEPTGGIDIDTIGKVVEVCAENGAEIIIPHVYTSIIDSATGLTRIEDVKELLRAIS >gi|333601589|gb|AFDH01000148.1| GENE 45 50969 - 51622 670 217 aa, chain + ## HITS:1 COG:BH2835 KEGG:ns NR:ns ## COG: BH2835 COG1418 # Protein_GI_number: 15615398 # Func_class: R General function prediction only # Function: Predicted HD superfamily hydrolase # Organism: Bacillus halodurans # 1 212 1 212 215 249 58.0 2e-66 MELQTVLEKAYQLAGEKLKDEPTGHDWWHIHRVTRLAKLIAKKENADEFVCEMAALLHDL IDEKLVDDKKKETEKLAAWLADNEVPGEAVRHILDIIGTLSFQGGTGTKMSTLEGRIVQD ADRLDAIGAIGIARTFVYAGARGSLIYDPHLEPRSEMTAEQYREGKSTAINHFYEKLLKL KELMNTETGRQLAEERHEFMEQYLVRFYSEWNLGKGL >gi|333601589|gb|AFDH01000148.1| GENE 46 51915 - 52148 222 77 aa, chain + ## HITS:1 COG:STM4240 KEGG:ns NR:ns ## COG: STM4240 COG3237 # Protein_GI_number: 16767490 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 63 2 64 70 59 57.0 2e-09 MDNNVFKGKWKQLKGEAQKQWGKLTDDDMDVINGEKDKLVGKLQERYGHTKDAAEDEYHR WSSNYRDEAPADADRRI >gi|333601589|gb|AFDH01000148.1| GENE 47 52351 - 53355 1034 334 aa, chain - ## HITS:1 COG:no KEGG:PPE_04322 NR:ns ## KEGG: PPE_04322 # Name: not_defined # Def: hypothetical protein # Organism: P.polymyxa # Pathway: not_defined # 6 280 7 283 290 218 40.0 3e-55 MNKHLTGVLALLLTLALLPFQHASAKEAEPWTDQTLIAHAMGGISGETLTNSYEAFLINY EKGHRLFEVDLNLTSDGQLAARHDWLRYLSDRLQPTLPDHLKDGPVTLAEFKRHKILNKY TPLDLDLLLQLLEQYPDAYIVTDTKSEDPEVVQKQFQLIVQQAKAVNPALLERIVPELYE IDMINQVKKIYDFPNYFFSIYMTSYSEKEIISLVKKNNIKAVAMPVERATSTMIGGLSSL GVPVYVHTVNELKEINKLKKIGVHGFYTDFLSYREVSPDSAAAKTQTAVKAASAGPAGDQ ANSVVQAGEKPAAGAPKETLMQKLASLVIQVFEK >gi|333601589|gb|AFDH01000148.1| GENE 48 53746 - 54411 638 221 aa, chain + ## HITS:1 COG:FN0712 KEGG:ns NR:ns ## COG: FN0712 COG2059 # Protein_GI_number: 19704047 # Func_class: P Inorganic ion transport and metabolism # Function: Chromate transport protein ChrA # Organism: Fusobacterium nucleatum # 11 183 6 178 186 93 30.0 4e-19 MKFSAARLKLLLQLFGSFARIGPVSFGGGFAMLPILEREIVLRRRWLDEDEFGEVISVSG VAPGGVGVNAAAFIGYKLGSVPGMLAAVFGMMLPTFVLVLILAIGFSAFRQYPKVIAAME GIQMAVLALIAYAGLKLLRSSVFDGASLFVFAGSIAALLLTGIHPLLVMLLGVTAGCVLV LAKGHFGFAVRFEPKKRRRERSADPAVPRYPELECYFGEGI >gi|333601589|gb|AFDH01000148.1| GENE 49 54426 - 54962 652 178 aa, chain + ## HITS:1 COG:FN0713 KEGG:ns NR:ns ## COG: FN0713 COG2059 # Protein_GI_number: 19704048 # Func_class: P Inorganic ion transport and metabolism # Function: Chromate transport protein ChrA # Organism: Fusobacterium nucleatum # 5 177 6 173 176 84 31.0 2e-16 MLITLFWTFLKIGILSFGGGFAMIPAIQHEVELQGWLTPEQFSEAVAISGMAPGPLATNC AIYIGKMTMGLPGAAAAVLGMVLPSVVLIAAVARFFYAIRTHRTVKTVFYGLRPVVAALV VVAALRLGFTYFRAEWWTWKTGVSAAIFLLALLGLTRYRMHPLSVILLSALVGVAIYG >gi|333601589|gb|AFDH01000148.1| GENE 50 54955 - 56166 255 403 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163762640|ref|ZP_02169704.1| ribosomal protein L33 [Bacillus selenitireducens MLS10] # 85 402 7 319 323 102 27 4e-21 MVNSPISERIGNRKQKELFELIRQGGTVSKIELLEESGLTVSTLTRLLDELCAQGLIAES GHGPSTGGRRPVLYRIQADYGCAFGVDISRTLSRLVLTDMQMKVLESRTWEMKEGLTPDV LLASVADEAEAMLQRRDFSPGHVLGMGVGAVGPVNREEGVILNPRYFPTPGWNGVPVRNM LEERLGLPVLLDNGANTALLAESWSRQKRSFRHMLYVHLGVGLRSSMLSEGKLIYGAVDM EGSIGQMIIQTDGVAPRSQEGNYGALESYASIYAVEREIRARLKQGRPSVLSALGSPDAI TFREIVQALHSRDPLAVEVITQAAVYFGIGLANLLNMLHPEKVVLGGPLISTNDLFFYTA TQTAIKKTYYYPDYQVLFSKGSFGEEALAIGAAGLVIRQLSAI >gi|333601589|gb|AFDH01000148.1| GENE 51 56269 - 57111 962 280 aa, chain + ## HITS:1 COG:CC0820 KEGG:ns NR:ns ## COG: CC0820 COG3386 # Protein_GI_number: 16125073 # Func_class: G Carbohydrate transport and metabolism # Function: Gluconolactonase # Organism: Caulobacter vibrioides # 104 258 97 256 289 101 35.0 2e-21 MEKLFTSSVFTPPHGFTGGIEGPACDAQGNLYAVNYAKEGTIGKVTPAGQSSVFVELPNG SIGNGIRFTRAGEMLIADYKNHNVLKVDMVTKAVTVWAHGPGMNQPNDIAISANDIVFAS DPNWSNNTGSIWRVTPGNVTLLESGMGTANGIEVSPDGKKLYVNESVQRRIWVYDLTEAG AISNKRLFIEFPDFGLDGMRCDSQGNLYSTRFGKGTVLKISPQGNILQEVVLHGKNCTNL TFGGPDGRTVYVTVADNGNVEKFRTDAPGRCRVLSGVVTS >gi|333601589|gb|AFDH01000148.1| GENE 52 57196 - 59295 1966 699 aa, chain - ## HITS:1 COG:SMc00195 KEGG:ns NR:ns ## COG: SMc00195 COG1368 # Protein_GI_number: 15965601 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily # Organism: Sinorhizobium meliloti # 55 590 78 627 639 283 32.0 6e-76 MQKGIHFIARRLHLFVWPLLLVVFIEFLNRGGVMAALSWVKHSPGEMVLNYLLTFCLFLV FTALTGRSRIAFWIVAAFMLICGLISGIKFKILGVPLLPWDLFLSSETTDIVQYLNGLFD KTIVIGIIVFLAASVALLYFVPWTHSRFRWKENIVLGVLGVALACAVYFDKPVPIKSALH ISTIPWNQADNYHVNGFMLSTVMNIEQIIIDAPQGYSQGNMDNFVKRVERRTNVDPNVKP NIIVILGEAFWDPTRMKNVTFSEDPVPFIHHLQQNYSSGYMLSPQFGGGTANVEFEVLSG NSIRFLPEGAIAYNQYMNRRVDSLASILARQGYQTTAINPFHNWFFNSRNVYQNFGFSKF ISQEYFEPEYNGPYLADKAVMNKIIEQVDSTSGPDFVFANTMENHAPFTPDKFKQNTIKA SGNFPEETKGMIETLAQGVHNTDAALKMLVEHYEKKGEPTIIMLFGDHLPAMGNNFQAYK DTGYLKDDDDSAAVLDKMYTLPVVVWDNYLPKHQDKLDMSASFLGPYLLNLAQREGTPYT DYLFSLSKKFPMIPPRNHYDRMKLTEQDVTEYRMLQYDVLFGEQYSFNGFRDKIINPKYT LGFGEMTIDNVSPLHQSTAGGSSGDSSVEISGKNFAPGCVVYLNDKALKTTYESRQSLSA IVPKDAAEPGKPVNLQVKVIDSKNLPIQTTPVKQVNELK >gi|333601589|gb|AFDH01000148.1| GENE 53 59506 - 59679 234 57 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MAKLAPAKEKQDIKPAPQSGANEKEPELKGAFASVMILGAFILITWFGVFALYLIRS >gi|333601589|gb|AFDH01000148.1| GENE 54 59734 - 60204 582 156 aa, chain + ## HITS:1 COG:BH0740 KEGG:ns NR:ns ## COG: BH0740 COG1622 # Protein_GI_number: 15613303 # Func_class: C Energy production and conversion # Function: Heme/copper-type cytochrome/quinol oxidases, subunit 2 # Organism: Bacillus halodurans # 1 155 1 154 157 160 48.0 7e-40 MHIHRLEKIWIVFGISMLIVFLSVIGVSAFAMGMNPPTGHAHTIDPAKVDLTPPFDQPGL KKVGENEYEAVMTAFAFGYKPDKMEIPAGATVHFMITSKDVVHGFEIPGTNVNMMVLPGE VNHLTYKFDKPGSYLVLCNEYCGGAHEWMKTTIVVN >gi|333601589|gb|AFDH01000148.1| GENE 55 60234 - 61907 1729 557 aa, chain + ## HITS:1 COG:BH0739 KEGG:ns NR:ns ## COG: BH0739 COG0843 # Protein_GI_number: 15613302 # Func_class: C Energy production and conversion # Function: Heme/copper-type cytochrome/quinol oxidases, subunit 1 # Organism: Bacillus halodurans # 20 557 22 564 564 540 57.0 1e-153 MNGTDMQPARQAAAAFNPKDCKLVLAHILFAFGALLLGGIAGVLQGLVRGGMIKLPAGIG YYQLLTAHGVLMALIFTTFFIIGFLYSGISKTLGGELLPLPRRLAWLGFGLMAGGTALGT VFILLNKASVLYTFYAPLKASPYFYIALTMVVVGSWMSGFGIFINYRYWKRTHKGQLSPL FAFMAVITMLLWQVATIGVAAEVLLQLIPWSFGWVDTVNVLLSRTLFWYFGHPLVYFWLL PAYICWYTIIPKVIGGKIFSDALARLSFILFLLFSIPVGFHHQLTEPGISSFWKFLQVIL TFMVIVPSLMTAFSLFATFETTGRAKGAKGLFGWFKFLPWKDVRFFAPFMGMLIFIPAGA GGIINASNQMNQVVHNTLWVTGHFHLTVATSVALTFFGITYWLIPAITGRQLTQRLHKLG IWQTILWCVGMFFMSGSMHTVGLLGSPRRTAYTTYENHPDTVLWMPYHVAMAIGGMILFV AVLLMIYNVVALMRSPKGETEYPIAEVRDASEPTPKLFERWGLWLGVTAVLILVAYTIPV AQMMGGDTPGSIPFVTW >gi|333601589|gb|AFDH01000148.1| GENE 56 62120 - 63298 966 392 aa, chain + ## HITS:1 COG:mlr3020 KEGG:ns NR:ns ## COG: mlr3020 COG0665 # Protein_GI_number: 13472653 # Func_class: E Amino acid transport and metabolism # Function: Glycine/D-amino acid oxidases (deaminating) # Organism: Mesorhizobium loti # 1 378 27 403 403 226 35.0 9e-59 MEEDIECEVLVIGSGMSGAMSAYMLTKAGFDTVLVDSREIAGGSTMANTGLIQFFNDKTL TSCIHTYGEENGVAFYKLCEEAVRTLGRICEEEGIDAQFQRRKSLYMASTEADVPMLEEE YRTLNKYGFEVEYLQPSDIADKFSFTKPGAILASGDAAINPYACVNGLIEVSAASGMRVY ARTEIDSRLETANGTVFYTKERRRIQAKYAVYSTGYETQEMKRNRNAKLLTSYAIATQPV GEFPGWYKECMIWETARPYLYMRTTADGRIIVGGEDEDMLPEEERINRLAVKTDILLDKA KALFPELDLRAEFSWAAVFGETHDGYPLIGVQDGFPNSMFSLVYGGNGTVYSVLGAEMIV NRLQGLTHPGERLFRFDRPRHTPPASEVKHVG >gi|333601589|gb|AFDH01000148.1| GENE 57 63413 - 64417 1068 334 aa, chain + ## HITS:1 COG:MTH875 KEGG:ns NR:ns ## COG: MTH875 COG0673 # Protein_GI_number: 15678895 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Methanothermobacter thermautotrophicus # 1 325 4 314 318 176 34.0 5e-44 MKVAVVGCGTMGTVHGTDYHRLPGVELTGVCDLDRETARDLAGQVQTKAYFSFEDMMAEA EIDVVSIALPTNLHKEYVMKAADLGKHVICEKPIALTLEDAEEMIAYCHKKGVRLFIGHV VRFFPEYADLKRKLEAGVTGEPGVAHLKRVGSHPGTVKDWYNDFDKSHGVIMDMMIHDID FARWAYGEVQEVFALNRRSEEQDYALVTLRFAGGAIANLEGHWGYPGAFATAAEFAGKAG IIRLNSRETDSLKLLRSSAAPVGARGVQVPKSPSYQDPYYYELKHFLACIREDKEPLVSA EDALRALEIVLAALESARTGQPVRLPLKGGAAHA >gi|333601589|gb|AFDH01000148.1| GENE 58 64410 - 65405 1179 331 aa, chain + ## HITS:1 COG:PAB1139 KEGG:ns NR:ns ## COG: PAB1139 COG0673 # Protein_GI_number: 14521934 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Pyrococcus abyssi # 4 325 2 331 335 180 34.0 3e-45 MRKLKIGMISFAHGHAFSYFDALNAMPEVEVAGIADEQKDRVAKITETYGISYYSTAEEL LRTDLDAVVICSENSRHAELTIASAKAGKHILCEKPLGISTAEMEEMITVCRDHGVQLMT AFPCRYIPAVVQAKEAVDRGEIGEIIAIKGTNRGSMPGGWFVDKKLSGGGAVFDHTVHVM DLMRWFLGSDVREVFAYADTRFHELDIDDAGMVHVRFENGVFAVLDPSWSRSKTFPTWGD VTLEITGTKGVISIDSFAQKNEVFSDVTGKAQWSYWGDNMDEYMIRGFVDALLGGKPVPV TGEDGLKAAAVGLAAYESAQAGKPVVLSSFL