Prediction of potential genes in microbial genomes Time: Fri May 27 06:18:59 2011 Seq name: gi|269838510|gb|ACXB01000001.1| Pediococcus acidilactici 7_4 cont1.1, whole genome shotgun sequence Length of sequence - 52161 bp Number of predicted genes - 45, with homology - 40 Number of transcription units - 25, operones - 15 average op.length - 2.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 49 - 101 10.8 1 1 Op 1 . - CDS 116 - 916 893 ## COG1387 Histidinol phosphatase and related hydrolases of the PHP family - Prom 952 - 1011 3.2 2 1 Op 2 . - CDS 1024 - 2463 1103 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase - Prom 2495 - 2554 6.7 - Term 2543 - 2584 6.0 3 2 Op 1 . - CDS 2591 - 3712 910 ## COG1215 Glycosyltransferases, probably involved in cell wall biogenesis 4 2 Op 2 . - CDS 3771 - 3920 191 ## 5 2 Op 3 . - CDS 3925 - 4428 579 ## PEPE_0104 hypothetical protein 6 2 Op 4 . - CDS 4425 - 5234 570 ## PEPE_0103 C-di-GMP-specific phosphodiesterase - Prom 5292 - 5351 5.6 - Term 5338 - 5381 10.1 7 3 Tu 1 . - CDS 5401 - 5721 424 ## COG0526 Thiol-disulfide isomerase and thioredoxins - Term 6144 - 6191 -0.4 8 4 Op 1 . - CDS 6274 - 7212 659 ## COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase 9 4 Op 2 . - CDS 7227 - 8171 987 ## COG1073 Hydrolases of the alpha/beta superfamily - Prom 8302 - 8361 76.5 + TRNA 8287 - 8359 80.0 # Ala CGC 0 0 - Term 8499 - 8548 9.4 10 5 Op 1 . - CDS 8577 - 9083 483 ## LVIS_2275 transcriptional regulator - Prom 9107 - 9166 6.3 - Term 9131 - 9171 3.2 11 5 Op 2 . - CDS 9172 - 9438 119 ## - Prom 9529 - 9588 2.5 12 6 Op 1 45/0.000 + CDS 9257 - 10177 391 ## PROTEIN SUPPORTED gi|225088774|ref|YP_002660041.1| ribosomal protein S16 13 6 Op 2 . + CDS 10198 - 10974 498 ## COG0842 ABC-type multidrug transport system, permease component + Term 11001 - 11043 9.2 + Prom 11460 - 11519 5.9 14 7 Tu 1 . + CDS 11554 - 13065 904 ## COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen + Term 13095 - 13145 12.3 + Prom 13278 - 13337 5.0 15 8 Tu 1 . + CDS 13417 - 14163 638 ## COG3201 Nicotinamide mononucleotide transporter + Term 14177 - 14241 10.1 16 9 Op 1 . - CDS 14936 - 15949 1128 ## COG3049 Penicillin V acylase and related amidases - Prom 15974 - 16033 3.1 17 9 Op 2 . - CDS 16044 - 17111 976 ## PEPE_0056 hypothetical protein 18 9 Op 3 . - CDS 17123 - 18325 943 ## COG2367 Beta-lactamase class A - Prom 18516 - 18575 6.3 + Prom 18517 - 18576 7.0 19 10 Op 1 . + CDS 18805 - 19827 844 ## gi|270289831|ref|ZP_06196057.1| predicted protein 20 10 Op 2 . + CDS 19877 - 20896 795 ## gi|270289832|ref|ZP_06196058.1| predicted protein + Term 20924 - 20970 6.3 + Prom 20917 - 20976 7.2 21 11 Op 1 8/0.000 + CDS 21089 - 21481 436 ## COG1725 Predicted transcriptional regulators 22 11 Op 2 . + CDS 21459 - 22172 197 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 23 11 Op 3 . + CDS 22165 - 22923 555 ## PEPE_0052 ABC transporter permease + Term 22951 - 23005 10.1 - Term 22942 - 22989 13.8 24 12 Op 1 . - CDS 23020 - 23892 1140 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase 25 12 Op 2 1/0.200 - CDS 23906 - 24655 909 ## COG4221 Short-chain alcohol dehydrogenase of unknown specificity 26 12 Op 3 . - CDS 24669 - 25205 393 ## COG0110 Acetyltransferase (isoleucine patch superfamily) - Prom 25238 - 25297 6.5 + Prom 25213 - 25272 6.2 27 13 Op 1 . + CDS 25330 - 26217 670 ## COG0583 Transcriptional regulator 28 13 Op 2 . + CDS 26272 - 26502 224 ## + Term 26544 - 26596 9.2 - Term 26732 - 26768 4.8 29 14 Tu 1 . - CDS 26819 - 27331 468 ## LAR_1705 hypothetical protein - Prom 27368 - 27427 5.1 - Term 27401 - 27442 0.1 30 15 Op 1 . - CDS 27464 - 27895 545 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins 31 15 Op 2 . - CDS 27895 - 29487 1742 ## COG1914 Mn2+ and Fe2+ transporters of the NRAMP family - Prom 29519 - 29578 4.5 32 16 Op 1 1/0.200 - CDS 29635 - 30315 502 ## COG1814 Uncharacterized membrane protein 33 16 Op 2 . - CDS 30330 - 31019 857 ## COG1814 Uncharacterized membrane protein - Prom 31067 - 31126 6.3 + Prom 31205 - 31264 5.3 34 17 Op 1 . + CDS 31416 - 31943 388 ## COG1286 Uncharacterized membrane protein, required for colicin V production 35 17 Op 2 . + CDS 31961 - 32194 337 ## PEPE_0041 hypothetical protein + Term 32259 - 32305 8.2 - Term 32069 - 32109 1.0 36 18 Tu 1 . - CDS 32198 - 32389 171 ## + Prom 32379 - 32438 5.0 37 19 Tu 1 . + CDS 32623 - 34413 1654 ## COG0584 Glycerophosphoryl diester phosphodiesterase + Term 34415 - 34463 14.4 - Term 34692 - 34740 12.4 38 20 Tu 1 . - CDS 34782 - 36053 1068 ## COG1301 Na+/H+-dicarboxylate symporters - Prom 36200 - 36259 7.2 + Prom 36153 - 36212 7.0 39 21 Tu 1 . + CDS 36241 - 36774 688 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Term 36791 - 36833 7.2 - Term 36855 - 36897 -0.7 40 22 Tu 1 . - CDS 36970 - 37254 325 ## PEPE_0527 transcriptional regulator - Term 37676 - 37732 14.3 41 23 Op 1 . - CDS 37813 - 48252 20587 ## COG5651 PPE-repeat proteins - Prom 48295 - 48354 1.7 42 23 Op 2 . - CDS 48444 - 48560 69 ## - Prom 48624 - 48683 3.9 43 24 Op 1 . - CDS 49302 - 49883 405 ## gi|270289852|ref|ZP_06196078.1| predicted protein 44 24 Op 2 . - CDS 49897 - 50736 485 ## PEPE_0117 hypothetical protein - Prom 50825 - 50884 6.4 - Term 50956 - 51011 17.6 45 25 Tu 1 . - CDS 51059 - 52159 1181 ## PEPE_0117 hypothetical protein Predicted protein(s) >gi|269838510|gb|ACXB01000001.1| GENE 1 116 - 916 893 266 aa, chain - ## HITS:1 COG:FN0428 KEGG:ns NR:ns ## COG: FN0428 COG1387 # Protein_GI_number: 19703770 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Histidinol phosphatase and related hydrolases of the PHP family # Organism: Fusobacterium nucleatum # 2 254 1 254 258 188 39.0 9e-48 MLYYDQHVHTDFSFDSDEKMENYLKVSGDDFVSTEHLEFNNPDADKKDSIPDYTGYVTEI ERLKKATGKRIYKGVEIGVSAGQIDRIKDYMAHHAFDLRLLSFHQNGEMDFQDEQVAHLD PLKVTQEYYQMMWQGINEYHDADVLAHFDYGVRRLNLTSGQFATTAGVLLTKIFKVAIEN NMAFELNTKSMYKYRNIGLYDYAIEIYKQLGGKRYTIGSDAHDVTNYENHFQDALAMLKA HDIHHVNVFRQGAMTVIPIDNVPEDL >gi|269838510|gb|ACXB01000001.1| GENE 2 1024 - 2463 1103 479 aa, chain - ## HITS:1 COG:L22116 KEGG:ns NR:ns ## COG: L22116 COG2723 # Protein_GI_number: 15672399 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Lactococcus lactis # 4 478 3 478 478 664 66.0 0 MTKLPKNFLWGGAVAAHQLEGAWQADGKGVSVADVMTAGTKDHPREITDGVVPGKNYPNH EGIDFYHRYKDDVKLFAELGIKAFRTSIAWTRIFPNGDDPEPNEAGLQFYDNLFDECLKY GIEPVVTLAHFEMPYHLVKKYNGFADRRVIDLFVRFAEVCFKRYRNKVKYWMTFNEINNQ TMYNNDFLMATNSGLIFKAGENREAAMYQAAHYELVASARAVKLGHEINPDFQIGCMINF TPLYPLNSAPNNVMLAERLMQRRYWFSDVHVNGVYPANIEAYLQRKGYRTDITEEDRQLL KEGTVDYVGFSYYSSYTVALPAGMDLDADELPLEKIVVDNPHVKTSDWGWSIDPVGLRYS LNWLTDRYHLPLFIVENGLGAYDKVTEDGQIHDPYRVAYLRAHIEEMEKAVELDGVDLMG YTPWGFIDLVSASTGQMSKRYGFIYVDKDDEGNGTLKRSKKDSFAWYQKVIQSNGEDLA >gi|269838510|gb|ACXB01000001.1| GENE 3 2591 - 3712 910 373 aa, chain - ## HITS:1 COG:L98542 KEGG:ns NR:ns ## COG: L98542 COG1215 # Protein_GI_number: 15672858 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases, probably involved in cell wall biogenesis # Organism: Lactococcus lactis # 1 373 66 440 442 491 62.0 1e-138 MIPAHNEEVMIEETITYLFEEINYDNFEVLVMDDGSTDQTAAILARLRERYPRLRTIKIK KNKGKAHAFNIGMYFSKGEYILSNDADTIPEPDALMKYMNFFLSDRDINTSAVTANMDVQ NRTKIIGKAQTVEFSSIVGVIKRSQTAVNDSMYAYSGANTMYKKDFLIDVGGFRQNRATE DISIAWDHQMIGAVPRFAPNIVFHMNVPESIRDLYRQRKRWAQGGTEVWLTNIKKFVRHP IKHRYQMSMFIDSTLSIIWSFFFVITAIIFAITMGGAYLNGHYDTVFHGFMMAFIFIAFE IIAGFFQLLAALLLDHHAAKLKYIIFAPLYMLFFWMINPITVVTTFIPALKTIFGLGSGT WVSPERKSLQNKK >gi|269838510|gb|ACXB01000001.1| GENE 4 3771 - 3920 191 49 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MAPIVFNNLFKGSFLATATNFVLLILCLYPVVGGVLLVYRLAILPIFES >gi|269838510|gb|ACXB01000001.1| GENE 5 3925 - 4428 579 167 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0104 NR:ns ## KEGG: PEPE_0104 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 4 164 6 166 167 239 70.0 2e-62 MKDKRQQLYTDPYFEKGHWWLKIWQTLVAILGWIGVIVPVVITATALWAQSDPRVPHLWT DPEGIFEIKFLAAVLLFSFAMAGLFAVSMTIIQNRRRERLAEQWPTFNPINQRKRESRLE KFMTDRFGDEEFRENVKYYEVEPEQNLDTDEIHRLYQKANLDDLNKE >gi|269838510|gb|ACXB01000001.1| GENE 6 4425 - 5234 570 269 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0103 NR:ns ## KEGG: PEPE_0103 # Name: not_defined # Def: C-di-GMP-specific phosphodiesterase # Organism: P.pentosaceus # Pathway: not_defined # 1 265 1 265 268 380 70.0 1e-104 MTLNQLEDFLFWLAILMAVLTVVIIGVYFWKTRYRGGNYLRDPHIPLRYFIQKQVDRHGR ITGYECLLRTQDAAGQWTLPQDFNSLPLRRVIDLLEDTFVSLPTEPVTLSIKLTYQQISS RDFEYFIRWAITKIEPMNLAVEISIKAMEKRVNRRLLRQQIQMGRNYGMQFAVNNVGSEL NDLKSIEWLLPEIDILKASMRSFRKEDPHEWLDLNLQFWNRLARKNHIKLVLVGIENAAD QALAEQLQIDARQGYLFGKPEDVHRGAEK >gi|269838510|gb|ACXB01000001.1| GENE 7 5401 - 5721 424 106 aa, chain - ## HITS:1 COG:L195348 KEGG:ns NR:ns ## COG: L195348 COG0526 # Protein_GI_number: 15672371 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Lactococcus lactis # 20 104 19 103 105 91 51.0 3e-19 MSNQANLTNEEIFDAIKTGKKMLFFTAGWCPDCAFIKPAMPEIMKKYDQYDWITVDRDDN LEVAQHFGIMGIPSFIALEDGKELARFGKGERHTPAEVEEFIQSIA >gi|269838510|gb|ACXB01000001.1| GENE 8 6274 - 7212 659 312 aa, chain - ## HITS:1 COG:BH1953 KEGG:ns NR:ns ## COG: BH1953 COG1597 # Protein_GI_number: 15614516 # Func_class: I Lipid transport and metabolism; R General function prediction only # Function: Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase # Organism: Bacillus halodurans # 3 298 2 287 295 135 31.0 1e-31 MKYYFIINKWAGARHSAETWQKMHHLLVQNQVEFDSVVTEYPRHAIELAQQFATSHRKGW IIVAFGGDGTLMEVLEGVQRVDATIPLGYIPAGSGNDFARAVGLSRDPYLALQQLIQTTQ PTILDVGAYQDRKEPVVHYFSNNVGIGFDASVVYQANQGQKIKLSKWHLESTAYISALLK TLVKQKGFPMSVTIDGKTRQFKNAFLVSITNIKYFGGGVGIAPQARLDDGKLDVVITEKL TLLRFIRLFAKLLKDGSHLAMPDVFFATGREVLVHSFAPEHGQVNGEDLPYQPFDLKVWT VKQSFWFTLQTK >gi|269838510|gb|ACXB01000001.1| GENE 9 7227 - 8171 987 314 aa, chain - ## HITS:1 COG:lin2180 KEGG:ns NR:ns ## COG: lin2180 COG1073 # Protein_GI_number: 16801245 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Listeria innocua # 51 311 55 317 319 199 37.0 4e-51 MKRSTKYVLAGLGAALVGVTAGMGIGGYASFLVGIKNTEKAKNRAIERSESEDNDALNLA WFNQQHPETVQMLSEDGLQLKASFIRQPQPTKHTVILAHGYHHARRQMIPYAKIFYELGY NVLMPDARSHGESEGNLIGFGWLDRRDYVRWVQRAVMLTNADEKIVLMGISMGAATVIAA AGEPDIASNVVAVIEDSSFNRLDQQFRHRLKRYYHLPPRELALIASLLTEKEAGYSFKEA DIEAQIKKVRVPIMFIHGEADRFVPIEMLDDLVEAAQVPSWVYLVNQADHVQALKADPKR YREEVAHFLEKFVK >gi|269838510|gb|ACXB01000001.1| GENE 10 8577 - 9083 483 168 aa, chain - ## HITS:1 COG:no KEGG:LVIS_2275 NR:ns ## KEGG: LVIS_2275 # Name: not_defined # Def: transcriptional regulator # Organism: L.brevis # Pathway: not_defined # 2 142 1 147 176 108 44.0 6e-23 MLDELVKKHQLAAKLFEFTALQNMADEQAERHLPVFKGQNKILVALSEGDNISQKELSQR LGISVQSIAEFIAKLLKKGYVTKQKSPTDGRVQLIKLTEKGKKEAKKSLFYIPEYLDYLN DDERAQLAAILDKMNNGIREDLKLHGIQNIGNRIRFSQLKRHIDEDLK >gi|269838510|gb|ACXB01000001.1| GENE 11 9172 - 9438 119 88 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MILSEPLVGFNKVVNIRRIVVFPAPLGPSKANTSPRLTLKKTCFTALWLPYVLFKLLISI AYLVLMINPPLMCLMIFRGPDEKYYKGT >gi|269838510|gb|ACXB01000001.1| GENE 12 9257 - 10177 391 306 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225088774|ref|YP_002660041.1| ribosomal protein S16 [gamma proteobacterium NOR5-3] # 1 298 11 304 312 155 33 6e-37 AIEINNLNKTYGNQSAVKQVFFKVKRGEVFALLGPNGAGKTTILRMLTTLLKPTSGSLRI MGHDVQAEPQTVRTFFGLTGQYASIDEDLSARENLTFFARLNGLSRQQAKQRTTELLEEF SLVNSADKAIAAFSGGMRRRLDLAVSLIARPQIIFLDEPTTGLDPRTRSQMWDTIRKLVA SGSTIVLTTQYLEEADALADRIAVIDHGKLVGLGTPDELKAQVGGEKLRLAVKNKLQAQQ ACQILTAITQEKVYQAGNEITAPLRDVNGLADILNQLRASNIEITTLAVEKPSLDDVFFA MTVGKN >gi|269838510|gb|ACXB01000001.1| GENE 13 10198 - 10974 498 258 aa, chain + ## HITS:1 COG:lin0979 KEGG:ns NR:ns ## COG: lin0979 COG0842 # Protein_GI_number: 16800048 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Listeria innocua # 12 257 4 248 250 112 30.0 1e-24 MFNTTTRKTNIIASTGTMTYRNLLKTLHNPDELLDVVVQPALFMLLFGYLFSGAIYGNVS SYLKILVPGILMQSLISAASGSATQISTDIHSGIYDRLKSLPIPQVAPLAGQLFADILRL IVAATAALSTGYLMGWRPEAGLGWLSMVIFLDIFLGWALSWIFALYGLVAKSPTLVESVS LMTMLVLVFLSNAFVPVKSLPRFMQILVTINPVSHVISANRAMLNAGYWPREAWIVLCAG IGIVAVFAPITVLVYKRK >gi|269838510|gb|ACXB01000001.1| GENE 14 11554 - 13065 904 503 aa, chain + ## HITS:1 COG:MA2369 KEGG:ns NR:ns ## COG: MA2369 COG2865 # Protein_GI_number: 20091201 # Func_class: K Transcription # Function: Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen # Organism: Methanosarcina acetivorans str.C2A # 10 390 13 367 510 74 25.0 5e-13 MNYQEKLPQEDEHIEYKEGLKNFPKEAWKTISAFENTDGGTLILGVKEYDKLRHKFQIVG VENPQQILDEFWSQNTNPQKINHSTITNNDITINEVNGAEIIEIKIHQASDQRKPIYLNN DINQSFIRNGSTDTKADKDSMKTLIRLSEDQLDTQVLRNYNLDDLDLKAVEDYKNELTAR ENYQMYKELDTVSFLKRIGVISKDYRDSGKEGITVGGLLFFGENNAILHTFPNFQLDYFD KSHPDQERWTTRISSIESNLNIYTFFKRVDTHLYNSYPNAFKLDEKGKRIDSFGSMIMAL REGLINMLMHADYFGDSPIVLNNLTNYYQFDNPGKMKIPSEDFFTTNNSKNRNAIISKLF LQAGYGERAGHGGEKIYESSVVNNYRAPEIKTDINSTHLTIWKVDYASSFSGKEVTPRER QIIKAIISSTSWTLTHKEIENITGFSRFKVDTAINSLIDKKIIEKLGVGRSTRYSIQTTN EQLLAQAQLMPEILRKALQRNDK >gi|269838510|gb|ACXB01000001.1| GENE 15 13417 - 14163 638 248 aa, chain + ## HITS:1 COG:L100822 KEGG:ns NR:ns ## COG: L100822 COG3201 # Protein_GI_number: 15672860 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinamide mononucleotide transporter # Organism: Lactococcus lactis # 22 247 5 232 243 86 27.0 3e-17 MQSTQDTELRYNPQSPMRVFNLHWYKDQMSGWMTSSYILLACGTLFLLATGLYHNFNALG ITSTIAGIIGFTCTLSITNGKPINGVLGFVSALMLIYVASITGNYSDVVMQTAYIFLLDI PVVLNKNWNSSEGLSPRLLTGKYIGQTVVTFIIFWVITYGLDTVILTSPRPVIDSLSATI GLTGAVLTVRRFRSSYYFWFAQSIMSITLWSVTAIAGHPVWVLFFTYCLYLLNDIIALAS SKWFHDRA >gi|269838510|gb|ACXB01000001.1| GENE 16 14936 - 15949 1128 337 aa, chain - ## HITS:1 COG:L86424 KEGG:ns NR:ns ## COG: L86424 COG3049 # Protein_GI_number: 15673817 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Penicillin V acylase and related amidases # Organism: Lactococcus lactis # 2 290 4 282 333 143 34.0 5e-34 MCTSIELTAENGAKFWGRTMDLAMTMFGEDGGAESVITIIPAEAKVASQLTDWTAKYTTM GVGVKGTPILFDGINEAGLAGDLQVLFESTADSLENLKRRGLTPLMNTEFVTYVLTHFKN VAEIREHYQEFGLADQATQVNGQAFTFPLHYNFVDESGDGVVLEPVENGAFKMYDSVGVV TNSPEYSWHTTNLRNYLGLTDVDVKDPRTYKNGVTLPPIEGGTGYGMAGLPGSYTSPARF VRSFTIANAMDDFAADRGIAQLYAAFRPVIIPEGIERKTADAPISDYTRYWSGYDLQKRA VYVQTGLGLAFTKQTLNANAQEISYTTIDRGDYVHEV >gi|269838510|gb|ACXB01000001.1| GENE 17 16044 - 17111 976 355 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0056 NR:ns ## KEGG: PEPE_0056 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 96 345 12 273 294 178 36.0 3e-43 MKFCTKCGTAIEPGDQFCTSCGTSVAQMQASEAPTDSAAEKEKVTEKPATTQETGFTTTS AASAATDLKVEKTTATASAPESDAVDETKAPTSATQAQEASTTAATTAKEAANDANSTTT SATIDKEKVSATVDQTKEYAKSYWNWLTTSVKHPFSYPETTNPLYGITTFVIFAIVSALI LIVSGRQTFNALDSKVKVSVIMENPFTFGVFLKFLAIFAVLFALMVLVGILVTQFLGAKG QTVTWFTYTNKLAHFVNYVLVLGLLALGMLFVAGPELVDEVTTDMPDILFRALLGMALAG LNLGFIATFFEEKLKFEFDRIYVAILAEAVLFIALYLGVEHLLIPAITQVGTSFN >gi|269838510|gb|ACXB01000001.1| GENE 18 17123 - 18325 943 400 aa, chain - ## HITS:1 COG:FN1584 KEGG:ns NR:ns ## COG: FN1584 COG2367 # Protein_GI_number: 19704905 # Func_class: V Defense mechanisms # Function: Beta-lactamase class A # Organism: Fusobacterium nucleatum # 163 375 15 236 264 115 32.0 2e-25 MFCQNCGTKNKPGAKFCRKCGTALRQPATQPTPVTSQTAPTIPQPAPKQSAPTEPSVTRE EHQAAVKRKKHTGWLWITAGIILAIGFVGFFIYKNNPTILSGVTHSDQAKVASSKSTSSV SSTPQKKTSSASTKKHLAFPKSTVEGTIRDAFGDISGDTAVYVSPVDSDTEVDFNDQPQR AASDIKLFVMIAAYQQVKDGELSLSDDYTLTDSDKVDGTGKLREMADGTKISIKDLIGYM MEDSDNTAANIMIRKLGGMAAVNHQIDKMGATDTKLERMLMDTDALEDGKDNYTSAKDLG TALKKIYNHQMVSRKYDEEMLTILKQNGNHTKLPHDLPTEATVYNKTGEFDDYGVENDAA IFGNQKGAFVIVVMSQDGQRDEQINAMNSFGSVMYKGLLE >gi|269838510|gb|ACXB01000001.1| GENE 19 18805 - 19827 844 340 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|270289831|ref|ZP_06196057.1| ## NR: gi|270289831|ref|ZP_06196057.1| predicted protein [Pediococcus acidilactici 7_4] # 1 340 16 355 355 659 100.0 0 MQKKTMLTALIALGFITPIISNTGASAATLNQSNPNASALIQKKFQGQPDSPKLSEKQLK VQDSDIETWMPNPTVRESVLDFLITLNYLPKGSTVNDITKDLLGSIKSRDRVPIEVNTFA GGQITPNLSEGLQYINPQTRVTIEIMDADDSQLMNLDFAQLHQNVDHWLIYIVNPEKSAN SKLMQKAIDTNLPNKENTQGDPGIYYVRGNLINNGSKLVPAPSKSIDISETLFPDISLTD DDFWKEIDRSKFQIHTMISTLITKNNFRVLNHDKYYSFKEGPEGNYAGTLAQTTDSISAM HDVADNPENYYAWLANAFVYKDGQHQRMAVGSIIYADYHK >gi|269838510|gb|ACXB01000001.1| GENE 20 19877 - 20896 795 339 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|270289832|ref|ZP_06196058.1| ## NR: gi|270289832|ref|ZP_06196058.1| predicted protein [Pediococcus acidilactici 7_4] # 1 339 4 342 342 647 100.0 0 MHKKTMLTALIALGFVTPIIVNSEISAAEINKNTQPAAELIQKMNDKQQDLPKLTEKQLK VQDSDIDTWMPNPTVRELLLGMLIKGNYLPAGSTVNEITKDLLGSVRNQETFYFEINAFK GGQITPNVSEGLQYFNPKAKVGLALVDANEAQIMQVNFAQLHQNVSQWGVYIINPEKIAN PQIARKVIDEKLPIKTDNARNMPTIQYMRANYSDSKSSVSPVLTESINISDTLSPTINLS SNDFWKENDPSLFTRHAMAGTLRNSDNLKRVGLFFSFRETSEGNFLGSLPEEIANSNIMK EVAQDPQDYYTEFRFNNIYDDGQHQDIHLSSEIYANFHK >gi|269838510|gb|ACXB01000001.1| GENE 21 21089 - 21481 436 130 aa, chain + ## HITS:1 COG:lin0743 KEGG:ns NR:ns ## COG: lin0743 COG1725 # Protein_GI_number: 16799818 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 1 114 1 114 125 79 35.0 2e-15 MDFDDKIPIYYQIKQYIYQEIIVGHFPPGSKIPAVRQFAVDLTVNVNTMQRALRELIQDG ILVSQRGKGNFVTEDQAILQNLRQTVVEKQLSQLYDHLLKLQIEPDEMVTYLSRYIAKRK DDEHGKSTEH >gi|269838510|gb|ACXB01000001.1| GENE 22 21459 - 22172 197 237 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 1 209 1 217 311 80 27 2e-14 MENLLNIKNLSYQRNLHSILKDLNLELPQGEIVGLLGANGAGKTTLMRLIAGSYIPRQGS IMINGDAQVVIRKKSVSFTEQVSSLSNNQRLFKIAEFYQQIYPDFDLSRFNHLLDTLNLK LDARLNQLSKGNQRKFVIAITLARQTDLYLLDEPFDGIDGMSRKKIISSIIGWKPENATI IISDHHVSDIANLLDEVVIVRDQRVIAQERADTIRETLGKDIESYYEDFYKEDVEYD >gi|269838510|gb|ACXB01000001.1| GENE 23 22165 - 22923 555 252 aa, chain + ## HITS:1 COG:no KEGG:PEPE_0052 NR:ns ## KEGG: PEPE_0052 # Name: not_defined # Def: ABC transporter permease # Organism: P.pentosaceus # Pathway: not_defined # 1 250 1 245 247 116 35.0 7e-25 MTKFFDLSKALFQEKFRLANQVLGFSALAAVVITLYEMVRIAAAPGALFATFESVLGLAS MLLYILLTVRNERVYTASTYRLIPVSNGKLYWANLITTFLSFAYFGLCSVIFALIFHWHM TIKAFVDGFSGSTFMLTVSIILTLIFAVLNFWALITLVHLLTEMISNFLPRAGQRISKII LVVVILYIFGRIVELISNVLILIAQHHTALLNANADLQFYLSPVYVLITLLIFSAINIYL LSSWVEAKPKNN >gi|269838510|gb|ACXB01000001.1| GENE 24 23020 - 23892 1140 290 aa, chain - ## HITS:1 COG:Cgl1021 KEGG:ns NR:ns ## COG: Cgl1021 COG0656 # Protein_GI_number: 19552271 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Corynebacterium glutamicum # 26 287 8 267 267 316 58.0 3e-86 MNIFEESFTLNNGVKIPKLALGTWEIPDDQVAEAVRQAVKIGYRHIDTAQAYGNERGVGE GVRTAGIKREDLFVNSKVAAEIKDYEGAKKSIDETLAKMKLDYLDMMIIHNPQPWVEVNQ SNDRHFAGNVEVWRALEDAMHAGKLRAIGVSSFEKEDLDNLTTHSDTKPMVNQILTHIGA TPEELINYSQASDIVVEAFSPIAHGAAMHNEAIKQMADKYKVSVPQLSIRYAWQLGLVVL PKTANPDHMRANAELDFEISDADMAALKQMHGMDYGDADIFPVFGGKMKG >gi|269838510|gb|ACXB01000001.1| GENE 25 23906 - 24655 909 249 aa, chain - ## HITS:1 COG:lin0452 KEGG:ns NR:ns ## COG: lin0452 COG4221 # Protein_GI_number: 16799528 # Func_class: R General function prediction only # Function: Short-chain alcohol dehydrogenase of unknown specificity # Organism: Listeria innocua # 1 247 1 246 248 204 47.0 9e-53 MSLQDKVVVIMGASSGIGAATARLLAERGAKLTLAARRLARLEEIKSAYPEASIETVEAD VTDMAAVQSVIDHTVAKFGRVDVLFNNAGIMPVNNLSELAHQEWQQMLDINVKGVLNGIA AALPVMRKQKFGHVISTSSVLGYEVLPGYAAYSGTKFAVRAIMEGLREEERQNGIKTTVI APGSVKTELFDSINNQEVRESLKAAQKQPGAEMMALEPEEIAQAVAFAIDTPKNMAVNEM VIRPTGQEI >gi|269838510|gb|ACXB01000001.1| GENE 26 24669 - 25205 393 178 aa, chain - ## HITS:1 COG:lin0451 KEGG:ns NR:ns ## COG: lin0451 COG0110 # Protein_GI_number: 16799527 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Listeria innocua # 1 176 11 186 189 161 44.0 5e-40 MESKLDLGTAAYSQVDEVVKTNQRLLQQLNTQEHSVAEIRQLVSQITNERIDDSTEIRLP FRTDFGRNLHIGKDVFINSGAMFVDLGGIYLGDHVLIGPNVTIASVNHRMEPQERRHLNL KSVYIHQNAWLGANVTVTPGVVIGENAVVAAGAVVTRNVPKNTVVAGVPARIIKKIKD >gi|269838510|gb|ACXB01000001.1| GENE 27 25330 - 26217 670 295 aa, chain + ## HITS:1 COG:lin0450 KEGG:ns NR:ns ## COG: lin0450 COG0583 # Protein_GI_number: 16799526 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 1 289 1 287 291 214 39.0 1e-55 MDIRVLRYFVTIAQELNMSRAAELLNVSQPALSRQIADLEDELGVKLFRREHRHLALTQE GHYLLGRAQQIVGLVNKTTYHLQKQDVISGTIEIGAGESSGITPLMETLHQIMRQYPEVR VNLRSGDYEDILAGLDAGLLEFGVLMGYHNLNNYNTLQLPEENRWGVLMRADAQLAEKDV IQPIDLVGRPLITSRQAAQRGTFQIWSGDLFDQLNFVGTYNLIFNGSLLVKTGAVIALTY DKLIDNYTTKNGLVFRPLAPEITEPNTLVWSKNHQLPNLNRLFLDTLQKEIANND >gi|269838510|gb|ACXB01000001.1| GENE 28 26272 - 26502 224 76 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MVQINCRTNVANQVVRASDHSACLVTAKPDSENKFYFHFYGNYHPSFAVTRTAQQDHLQV RTDGVTRRETFQVNFV >gi|269838510|gb|ACXB01000001.1| GENE 29 26819 - 27331 468 170 aa, chain - ## HITS:1 COG:no KEGG:LAR_1705 NR:ns ## KEGG: LAR_1705 # Name: not_defined # Def: hypothetical protein # Organism: L.reuteri_K # Pathway: not_defined # 1 169 20 187 187 142 48.0 6e-33 MLLFLVRKYRLSAVLSGYLLGTLLLVTASYLIGQTLSAFLPEWLLGVLGFLPIYLAIKDD DDEVNATQSGASAVGTVLVTYLSVCTGCNLAIFLPVLMHAQLAEFFVALLLILGLSAVAV LVINLLSKNSLVSQVMEKYGEKLMKVCYVLIGLYVFWDSGLVAHLIRLVG >gi|269838510|gb|ACXB01000001.1| GENE 30 27464 - 27895 545 143 aa, chain - ## HITS:1 COG:SPy1780 KEGG:ns NR:ns ## COG: SPy1780 COG0589 # Protein_GI_number: 15675620 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Streptococcus pyogenes M1 GAS # 1 143 19 162 168 65 29.0 4e-11 MAFDVKRILVGVDDSKDALLALDYAINLAKDANRELVIVSVLENDEMNVFQALDKDYIHG ERAELEQHILTYQKQAQDAGVTNVRCVVTEGDPGETIVEEVIPAVKPDLLVVGAESKKGI ARRFGSQAAYMAKYAPITVTVVR >gi|269838510|gb|ACXB01000001.1| GENE 31 27895 - 29487 1742 530 aa, chain - ## HITS:1 COG:L91569 KEGG:ns NR:ns ## COG: L91569 COG1914 # Protein_GI_number: 15673064 # Func_class: P Inorganic ion transport and metabolism # Function: Mn2+ and Fe2+ transporters of the NRAMP family # Organism: Lactococcus lactis # 10 309 7 306 314 460 79.0 1e-129 MSNEIKNPKKRRKLISYANGRSLEEINGTVKVPKNIGFWKTLFMYSGPGALVAVGYMDPG NWSTSITGGQNFQYMLMSIILISSLIAMLLQYMAAKLGIVSQMDLAQAIRARTSRALGIV LWILTELAIMATDIAEVIGAAIALYLLFHIPLVVAVFITVFDVLLLLLLTKIGFRKIEAI VVCLIMVILVVFVYQVALSNPSWGAVFGGLIPTTKAFATTPTVGGMTPLSGSLGIIGATV MPHNLYLHSAVSQTRKINHDDEEDVARTVRFSTWDSNIQLSFAFVVNALLLVMGVAVFKT GAVQDPSFFGLFHALNDTSTLSNGILIGVAKTGILSTLFAVALLASGQNSTITGTLTGQV IMEGFVHMRMPLWARRLITRLISVVPVLICVMLTSGKGSIQEHEALNNLMNNSQVFLAFA LPFSMVPLLMMTDSRVEMGDRFKNSWIVRILGWISVIFLTYLNLTGLPDSIAAFFGENAS AAEISMAHDIAYVLIVAVLALLAWTVIELYKGNKRYEIELAEKANAKEAA >gi|269838510|gb|ACXB01000001.1| GENE 32 29635 - 30315 502 226 aa, chain - ## HITS:1 COG:L104065 KEGG:ns NR:ns ## COG: L104065 COG1814 # Protein_GI_number: 15673456 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Lactococcus lactis # 1 226 1 225 226 223 53.0 2e-58 MKKKTKMSMDNKLNMLRAGVLGANDGILTVVGVLFSVVAATTNPFIIFIAGLSDLLSCAF SMSAGEYASVSSQRDTEKAAVGEEKLRLKADPEAEYELVANFYMEKGVTKETAHQIARSL MDSAPLKTAVDVRYDMDLDEYLTPWGAAISSLFSAALGGVFPLVAMTLAPSDFKMQATII ATVISVALTGFLSSELGNGLPKKAVIRNVIVGIITMFIHYYIGKLF >gi|269838510|gb|ACXB01000001.1| GENE 33 30330 - 31019 857 229 aa, chain - ## HITS:1 COG:L104745 KEGG:ns NR:ns ## COG: L104745 COG1814 # Protein_GI_number: 15673457 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Lactococcus lactis # 6 229 3 226 229 214 53.0 9e-56 MSKKAKQNTLAQKINVIRASVMGANDGILSVAGIVLGVAGATTNSFAIFISGISGMLAGT VSMAMGEYVSVNSQKDSQENAVNHQRQALEDDYQKELDFVAEKYAKTGIPEDLAQKAARE MMEKDALLTTVRERYGFDMHNFTSPYQAAIASMIAFSLGSLLPLLTITFAKHSIRVPLTV VSVVVALAITGYAAAAIGKAVRRRAVVRNVIAGLLTMGATYLIGSLFAR >gi|269838510|gb|ACXB01000001.1| GENE 34 31416 - 31943 388 175 aa, chain + ## HITS:1 COG:BH3108 KEGG:ns NR:ns ## COG: BH3108 COG1286 # Protein_GI_number: 15615670 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein, required for colicin V production # Organism: Bacillus halodurans # 2 165 1 175 179 81 31.0 7e-16 MLLSLILILILISAFFSGYRRGLVAEIIYLVGYLIVFAAAKNFTAPFAEFLSRTFGNGNH DPLTNLTTMNAVSFIFLMLVGWIAIRLIVRFSQMITWLPIIHQVNGLAGAVAGFVISYLI TFIVLSISQFVPNDFYQEQLSQSIVAQSILAKTPAISSKVINNYILDTPQTRDVL >gi|269838510|gb|ACXB01000001.1| GENE 35 31961 - 32194 337 77 aa, chain + ## HITS:1 COG:no KEGG:PEPE_0041 NR:ns ## KEGG: PEPE_0041 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 76 1 76 77 74 55.0 9e-13 MDLTIIKKYIATYLSSPTTRLTTVNTPRVGIKVVKGDEETFFYPNPEDKNAFFEEFDEHR YLHQYDAAKKAFTTQEL >gi|269838510|gb|ACXB01000001.1| GENE 36 32198 - 32389 171 63 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLFENEKVLKKSFDFNRAKTCAKSQFVPLNQKLTIMPNSGIMVNFQLMLANYPTFVPLSY RMD >gi|269838510|gb|ACXB01000001.1| GENE 37 32623 - 34413 1654 596 aa, chain + ## HITS:1 COG:L58914_2 KEGG:ns NR:ns ## COG: L58914_2 COG0584 # Protein_GI_number: 15673979 # Func_class: C Energy production and conversion # Function: Glycerophosphoryl diester phosphodiesterase # Organism: Lactococcus lactis # 349 592 1 243 249 258 50.0 3e-68 MASITKTYRFIFKHLLSYLSLFITSIVVIYAGIIPLFTLIGSIMLRLAGVRYLSNTNFVE VVTNHPFLDIGCLLLILAVIVAIYWQVTFLFLGIMQINQGKKLALNSLITLSFQRVRHTF GRAVGYLLIYCLIILPFGGLGISTPLLNKVRVPDFIINYFLYENRPLLLVLILLYLVTFY LGIRFFLALPLIILGRSTGHQAVQKSWRLTKLNFKTIVKQLGLLIVVNVGLSILGQALIL ALQALADHHLPASWDYWAASINLLLIELVLLLMSIALGTGSLMIMADQLKNQASFVISSR KLSNQLQRLSYQSGKHWWFKALAGVLFLGILGFNALYLNGFFTSTPLTISHRGVNAKNGV QNTIPALINTSRLHPDFIEMDLHETKDHQFVVMHDENLKQLTGVNKRPHDLTLRQITRLT ARENGTSAKVASFDDYLATAERLHQRLLVELKTTKRDSSNSITAFNKRYGKRLVANHDEV HSLDYDAVEKLKTLNPKLQVGYILPFNFIGVPQSKADFYTMEHSTLNNSFLITAQLTGRK VYAWTVNDRDVMAKLTFMGVNGIITDNLETLQRTIQQLNHHPNYVSRLLNFTVELG >gi|269838510|gb|ACXB01000001.1| GENE 38 34782 - 36053 1068 423 aa, chain - ## HITS:1 COG:PA5479 KEGG:ns NR:ns ## COG: PA5479 COG1301 # Protein_GI_number: 15600672 # Func_class: C Energy production and conversion # Function: Na+/H+-dicarboxylate symporters # Organism: Pseudomonas aeruginosa # 8 423 5 426 444 405 51.0 1e-112 MKKVRNWRLTLGWQILIGLILGVVLGASFYHNQVAITVMQNLGTMFIHMIQMIVLPIVVS CLTVGIAGMGDVSELGRVGLKTLIYFEVLTTIALIVGMIFANVFHPGTYIDIHSLQSTDI SSYVETAKAAKSNSGIWATLMNIIPTNIFSSLAEGNMMPVIFFSVLFGLGLTAIGKQGQI LIDALTAVQEVMFKVTNWIMHFSPIGVCALIGVTIAQMGIDALKPLGLFVLITYVAMLFF VLVVLGLVAKFHNINFFELLKVIKNELILAFSTASSEAALPKMIDKMQKYGVSQGIVSFV IPTGYTFNLDGSAIYQAIGALFLAQAYGIHLTLGHQITLLVVLMITSKGMAGVPGASFVV LLATVATIGVPMSGLTFIAGVDRIIDMGRTAVNVVGNSLAAIIMGKSEGEFDEEKHRKYV GNL >gi|269838510|gb|ACXB01000001.1| GENE 39 36241 - 36774 688 177 aa, chain + ## HITS:1 COG:L36177 KEGG:ns NR:ns ## COG: L36177 COG0454 # Protein_GI_number: 15674159 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Lactococcus lactis # 5 176 3 167 169 140 42.0 1e-33 MTTSYLRRATKADLPAILTIINEAKAYLKEQGINQWQAGYPTNQDIEKDIEQQISYVLMV DGQIAGTAALWPDNDVNYDDIQEGSWRGNPDDKYMSIHRIAISSKFRGQRLSEKMMQGLF TISSLLGYDEVRVDTHPLNKGMQKVITNNGFEYRGIIDFIDENEVDNKRFAYQLYLK >gi|269838510|gb|ACXB01000001.1| GENE 40 36970 - 37254 325 94 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0527 NR:ns ## KEGG: PEPE_0527 # Name: not_defined # Def: transcriptional regulator # Organism: P.pentosaceus # Pathway: not_defined # 1 94 1 94 94 142 93.0 4e-33 MSKIDEYIEKRSAQDADFAKQVEQEDINLGVAIKVRSLREDMGLTQREFAQVIGKPQSTV ARIENGNMNASTKMLSDIAKATKQRLTIQFEPVH >gi|269838510|gb|ACXB01000001.1| GENE 41 37813 - 48252 20587 3479 aa, chain - ## HITS:1 COG:MT2425 KEGG:ns NR:ns ## COG: MT2425 COG5651 # Protein_GI_number: 15841868 # Func_class: N Cell motility # Function: PPE-repeat proteins # Organism: Mycobacterium tuberculosis CDC1551 # 3169 3456 222 533 615 79 31.0 1e-13 MSKRKIWNVNEKKHYKMYKNGKQWFFAGMGIVAGLFGAGSTTIASADETPRGANLDLSKS KNLLATKTSATIPGSTSAANSQSTNSTHNSVTNSTSAAKQNAQTSASQAASKAGSASLSA SLKAAQDASASQQKASQSQAAAKAASQQKASEKTVKQSTTSSTKAKPASQTSTKGSQAAS TTKQDTASANQAKSASQGSQSKTDPQSKASTDASNNQSSQSLSAVKSATDSAKQSRSLEA AKQSLSISQSMVASMSKSTEKITSDSNDPEAPILHEDAYYDDADMDHPSSLIPAKDDWRD NDDVFTIAEPPKIPGYILDMTKTEIAFAMSGAHQPSNQARLDYENAFTAYAKTAGSIADL NAWIKNSDFYKKYLTGTDPESQIDAIQIAWYFTKHDSELNLEGHDVETSVGNPLEPKDAV VSITNADGSHPNLDEDLPGLTWIGYINWNQHGDYDVMLSYYDANSLQTVTTQITVHVTSL INLDGKDGTTYEGYPKDIGDFVKDTILNGKGEHVDIADADLSWDMREDNWNHAKDYPITI RFKDTTGEIIETQVTIHVLKNQSEISGKDATYTVGQGPHLTVDDLQPSGRNADGSLASGF EADFSHVDWDTAGKYTVEISFTDAVTKGKVSTTVTVTVDDNYGSMSTSASMSNKNDDDSR SASISDKNDSESTSTSNKHDDDSRSISTSISDKNDSESTSTSNKHDDDSRSISTSTSDKQ DSESTSTSNKNDDDSRSISTSTSDKNDSESASTSNKNDDDSRSISTSISDKDDSESTSTS NKNDDDSRSISTSTSDKNDNDSRSVSTSTSDKNDNDSRSVSASTSDKNDDDSRSRSESDK NNSESKSESDKNDSESKSESDKHDSESKSESDKHDSESRSISQSDKDDSESKSTSDKHDS ESKSESDKHDSESRSASKSDSQDSRDSQSRSTSQSDKDNSESKSASQSDKDDSESKSTSD KHDSESKSESDKHESESKSDSDKHESESRSISQSDKDDSESKSTSDKQESESKSASNSDN QNSQDSESRSISQSDKEESESKSTSDKHDSESKSESDKHDSESRSASKSDSQDSRDSQSR STSTSDKQESESKSASTSDKQESESKSTSDKQESESKSESDKHESESKSASDSDKHDSES RSASTSDNQNSQDSESRSISQSDKDDSESKSTSDKQESESKSASTSDHQDSQDSESRSIS QSDKEESESKSTSDKHESESISASNSDNQNSQDSESRSISQSDKEESESKSTSDKQDSES RSASKSDSQDSRDSQSRSTSASDKQDSESKSASTSDKQDSESKSTSDKQESESKSASTSD KQDSDSKSASNSDNQDSRDSESRSISQSDKDDSESKSTSDKQESESKSASTSDHQDSQDS ESRSISQSDKEESESKSTSDKHESESISASNSDNQNSQDSESRSISQSDKEESESKSTSD KQDSESRSASKSDSQDSRDSQSRSTSTSDKQDSESKSASTSDKQDSESKSASTSDKQDSD SKSASTSDNQDSRDSESRSISQSDKDESESKSTSDKHESESISASNSDNQDSRDSESRSI SQSDKDDSESKSTSDKQDSESRSASKSDSQDSRDSQSRSTSTSDKQDSESKSASTSDKQD SESKSASTSDKQDSDSKSASTSDNQDSRDSESRSISQSDKDESESKSTSDKHESESISAS ESDNQNSRDSESRSTSQSDKNDSDSKSASTSDNQDSRDSESRSISQSDKNDSDSKSTSTS DKQDSDSRSISQSDKNDSDSRSASTSDNQDSRDSESRSISQSDKDDSESRSTSDKHESES ISASESDNQNSRDSESRSISQSDKNDSDSKSASTSDNQDSRDSESRSTSQSDKNDSDSKS TSTSDKQDSDSRSISQSDKNDSDSRSASTSDNQDSRDSESRSISQSDKDDSESKSTSDKH ESESISASNSDNQNSRDSESRSISQSDKDDSDSKSTSDKQDSESKSTSDKLDSESRSAST SDNQDSRDSESRSISQSDKDDSESKSTSDKQDSESRSASNSDHQDSQDSESRSISQSDKE DSESRSTSDKHESESISASNSDNQNSRDSESRSASQSDKEESESRSASTSDNQDSRDSES RSASQSDKDDSESKSTSDKHESESISASESDNQNSRDSESRSASQSDKEESESRSASTSD NQDSRDSESRSISQSDKDESESKSTSDKHDSESISASDKEDSESRSTSDKNDSDSRSAST SDNQDSRDSESRSISQSDKDDSESKSTSDKHESESISASESDNQDSRDSESRSISQSDKD DSESKSTSDKQDSESRSASTSDNQDSRDSESRSISQSDKDDSESKSTSDKQESESRSAST SDNQDSRDSESRSISQSDKDDSESKSTSDKHDSESISASDKEDSESRSTSDKQDSESRSA STSDNQDSRDSESRSISQSDKEDSESRSASDKQDSESKSTSDKHESESISASESDNQNSR DSESRSISQSDKEDSESRSTSDKQDSESISASDKQDSESRSTSDKNDSDSRSASTSDNQD SRDSVSRSISQSDKEDSESRSTSDKQESESISASDKQDSESRSASDKQDSESRSTSDKNE SDSRSASTSDNQDSRDSESRSISQSDKEDSESRSTSDKQDSESISASESDNQNSRDSESR SISQSDKDDSRSVSESDKEDSESRSDSEKHESESISASESDNQNSRDSESRSISQSDKDD SDSRSASTSDNQNSRDSESRSISQSDKDDSRSVSESDKEDSESRSDSDKHESESISASES DNQNSRDSESRSISQSDKEDSESRSDSDKHESESISASESDNQNSRDSESRSISQSDKDD SDSRSASTSDNQDSRDSESRSISQSDKEDSESRSTSDKQDSRSVSESDKEDSESRSASDK LDSESRSASDKIDSDSRSASISDNQNSRDSESRSISQSDKEDSESRSDSDKHESESISAS TSDNQNSRDSESRSISQSDKEDSESRSASDKQDSESRSTSDKNDSDSRSASTSDNQDSRD SESRSISQSDKEDSESRSTSDKQDSRSVSESDKEDSESRSTSDKHESESISASISDNQNS RDSESRSISQSDKEDSDSRSASTSDNQDSRDSDSRSISQSDKEDSDSRSTSISDKQDSES RSASDKDDSESRSASDKQDSESRSASDKNDSESRSASDKHDSDSGSDSNNGGSNNGSGSD SNNGGSNNGSGSDSNNGGSNNGSDSDSNNGGSNNGSDSDSNNGGSNNGSDSDSNNGGSNN GSDSDSNNGGSNNGSDSDSNNGGSNNGSDSDSNNGGSDNGSGSDSNNDGSNNGSDSDSNN DGSNNGSDSDSNNDGSNNGSGSDSDNGGSNNGSGSDSNNGGSNNGAGDNSNNGSGNNNGT DQGNGSNGSGDGTWNGGAGNGTGNGTNGGNGNTGNGGAGLVDTGYQPGNGQGDGSVDLAQ DNGGNGANSSNGGTNSAERLPQTGEEDNASARAAGTVGLVGGLLGLFGLGKKRKRHDEE >gi|269838510|gb|ACXB01000001.1| GENE 42 48444 - 48560 69 38 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSETVITEKLRIMTKFLNDFCRRGTFASGPGIVRTGFG >gi|269838510|gb|ACXB01000001.1| GENE 43 49302 - 49883 405 193 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|270289852|ref|ZP_06196078.1| ## NR: gi|270289852|ref|ZP_06196078.1| predicted protein [Pediococcus acidilactici 7_4] # 1 193 1 193 193 357 100.0 2e-97 MGLNFKDHSGIWNNKKVKKSGIGALTVGIALLGLSIGQAQASIRAAPEHGWRPEMAHQVS KIGSMREQTSLAQNSSSLNAAIPDEVADPTFNVVREGDPVITGTGEPGAEINVLKDTPAG EPPLLIGNTTVDFLGRWLIDASQQDLCEGDVLFAYQGEGAQVKGTQTTVEAKQAEVPRPA VNAVKAGTQSITG >gi|269838510|gb|ACXB01000001.1| GENE 44 49897 - 50736 485 279 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0117 NR:ns ## KEGG: PEPE_0117 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 104 277 292 466 1676 102 37.0 1e-20 MYMGFKKYFSNGTDRKADNYPMVKRNRRWILASALMLAMFGAGVVQSHTSAKAATINAPR TENTVKVTGSVNAQRYDLSRRADNKTLIKKTSPTQKNNLANPALAKGNLNITGGAYYGLV KNGDGTYSGGLQFNYSGSGSSNYGAPNLVIQIPEPLRGLFEKINENGSWTKYFNGNGIFN TGPLGLIWTNKNEDFSYDGTNLILKTANASSLYGNKRITAFLNFNLGQAVNDFEEEIPDT TDYYLFKMALVDPESPINWDLIGDYAGSGELGTNHIMYR >gi|269838510|gb|ACXB01000001.1| GENE 45 51059 - 52159 1181 366 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0117 NR:ns ## KEGG: PEPE_0117 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 6 365 807 1156 1676 167 41.0 5e-40 TNGTTTVLPKPEELPAPTFDGVKEGDTTITGKGEAGDTVYVYVKGTNGSDDILIGHTTVG DDGTWSLATGRVNLYEGDQLYAYQTNGDQQSPNGTTVVQPRPEEVPAPTFAGVKEGDTTI KGQGEAGDTVYVYVKGTNGADDIIIGHTTVDSDGNWTLSTGRVSLFAGDELRAYQVRGDQ QGPEGSTIVKAKETVKAPGMNDVTEGDPAITGTGEPGATVNVTVGGQPLPPVTVGDDGKW SVDTSGVTLTPGDEVSATQTVDGNTSDATTTTVQPKKADIPAPGMNSIKPGAKVIKGTGT KGNTITVVKVDADGKTTPIGTATVDEFGKWTVNVPDDVVLAAGDTVQAVQTTPDGDSSDP TEVTVG Prediction of potential genes in microbial genomes Time: Fri May 27 06:22:40 2011 Seq name: gi|269838509|gb|ACXB01000002.1| Pediococcus acidilactici 7_4 cont1.2, whole genome shotgun sequence Length of sequence - 406533 bp Number of predicted genes - 386, with homology - 361 Number of transcription units - 211, operones - 90 average op.length - 2.9 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 3963 3534 ## PEPE_0117 hypothetical protein - Prom 4011 - 4070 10.5 - Term 4307 - 4354 9.4 2 2 Tu 1 . - CDS 4385 - 5023 609 ## COG1272 Predicted membrane protein, hemolysin III homolog - Prom 5052 - 5111 9.0 + Prom 5048 - 5107 3.8 3 3 Tu 1 . + CDS 5147 - 5599 363 ## PEPE_0036 BS_ykrK family protein + Term 5661 - 5716 14.3 - Term 5648 - 5708 17.1 4 4 Tu 1 . - CDS 5739 - 8939 2746 ## PEPE_0118 adhesion exoprotein - Prom 9131 - 9190 4.4 - Term 9414 - 9462 12.4 5 5 Tu 1 . - CDS 9507 - 9827 449 ## COG2076 Membrane transporters of cations and cationic drugs - Prom 9913 - 9972 2.6 - Term 9840 - 9897 13.1 6 6 Op 1 . - CDS 9976 - 10731 736 ## COG0789 Predicted transcriptional regulators 7 6 Op 2 . - CDS 10797 - 12440 1549 ## LVIS_2143 arylsulfate sulfotransferase - Prom 12474 - 12533 4.4 8 7 Tu 1 . - CDS 12770 - 13831 914 ## COG1404 Subtilisin-like serine proteases - Prom 13943 - 14002 7.2 - Term 13971 - 14016 7.4 9 8 Op 1 . - CDS 14066 - 14536 555 ## PEPE_0031 hypothetical protein 10 8 Op 2 . - CDS 14561 - 15805 1657 ## PEPE_0030 hypothetical protein - Prom 15842 - 15901 7.2 - Term 15892 - 15936 7.1 11 9 Op 1 3/0.023 - CDS 15987 - 17405 1537 ## COG0531 Amino acid transporters - Term 17430 - 17488 4.4 12 9 Op 2 2/0.068 - CDS 17505 - 18731 971 ## PROTEIN SUPPORTED gi|149020061|ref|ZP_01835035.1| 50S ribosomal protein L33 13 9 Op 3 8/0.000 - CDS 18784 - 19713 918 ## COG0549 Carbamate kinase 14 9 Op 4 . - CDS 19726 - 20727 1135 ## COG0078 Ornithine carbamoyltransferase - Prom 20935 - 20994 9.0 + Prom 20319 - 20378 2.5 15 10 Tu 1 . + CDS 20582 - 20854 166 ## + Prom 20861 - 20920 5.3 16 11 Tu 1 . + CDS 21040 - 21888 906 ## PEPE_1632 signal transduction protein + Term 21915 - 21950 1.1 - Term 22044 - 22090 5.1 17 12 Tu 1 . - CDS 22129 - 22677 550 ## COG0431 Predicted flavoprotein - Prom 22793 - 22852 4.2 - Term 22879 - 22923 6.6 18 13 Op 1 . - CDS 23042 - 24226 968 ## COG4552 Predicted acetyltransferase involved in intracellular survival and related acetyltransferases 19 13 Op 2 . - CDS 24248 - 24418 238 ## 20 13 Op 3 . - CDS 24421 - 25656 1148 ## COG1455 Phosphotransferase system cellobiose-specific component IIC - Prom 25708 - 25767 7.8 - Term 25681 - 25723 -0.9 21 14 Tu 1 . - CDS 25951 - 26517 306 ## COG1396 Predicted transcriptional regulators - Term 26770 - 26816 6.6 22 15 Op 1 36/0.000 - CDS 26904 - 27581 245 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 23 15 Op 2 . - CDS 27586 - 28644 921 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 24 15 Op 3 . - CDS 28647 - 29150 460 ## PEPE_0017 transcriptional regulator - Term 29163 - 29222 13.1 25 15 Op 4 . - CDS 29226 - 30716 872 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains 26 16 Tu 1 . - CDS 31070 - 31801 716 ## COG0730 Predicted permeases + Prom 31895 - 31954 4.9 27 17 Tu 1 . + CDS 32059 - 32427 404 ## PEPE_0014 hypothetical protein + Term 32444 - 32471 -0.9 - Term 32559 - 32608 9.2 28 18 Op 1 . - CDS 32701 - 33897 1291 ## COG0477 Permeases of the major facilitator superfamily - Prom 33921 - 33980 2.1 - Term 33917 - 33961 -0.1 29 18 Op 2 16/0.000 - CDS 33990 - 35387 1598 ## COG0305 Replicative DNA helicase 30 18 Op 3 9/0.000 - CDS 35437 - 35889 648 ## PROTEIN SUPPORTED gi|116491829|ref|YP_803564.1| 50S ribosomal protein L9P 31 18 Op 4 . - CDS 35895 - 37892 819 ## PROTEIN SUPPORTED gi|162447066|ref|YP_001620198.1| bipartite protein: signaling protein and ribosomal protein L9 - Prom 37919 - 37978 5.4 - Term 38025 - 38071 10.1 32 19 Op 1 21/0.000 - CDS 38105 - 38341 387 ## PROTEIN SUPPORTED gi|116491827|ref|YP_803562.1| SSU ribosomal protein S18P 33 19 Op 2 24/0.000 - CDS 38371 - 38892 584 ## COG0629 Single-stranded DNA-binding protein 34 19 Op 3 . - CDS 38929 - 39216 328 ## PROTEIN SUPPORTED gi|116619043|ref|YP_819414.1| ribosomal protein S6 - Prom 39303 - 39362 8.8 - Term 39334 - 39392 2.2 35 20 Op 1 24/0.000 - CDS 39402 - 41933 2262 ## COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit 36 20 Op 2 9/0.000 - CDS 41980 - 43926 2041 ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit 37 20 Op 3 9/0.000 - CDS 43930 - 45054 988 ## COG1195 Recombinational DNA repair ATPase (RecF pathway) 38 20 Op 4 6/0.000 - CDS 45055 - 45282 301 ## COG2501 Uncharacterized conserved protein - Prom 45303 - 45362 8.5 - Term 45796 - 45838 8.0 39 21 Op 1 16/0.000 - CDS 45879 - 47018 1248 ## COG0592 DNA polymerase sliding clamp subunit (PCNA homolog) - Prom 47065 - 47124 11.3 40 21 Op 2 . - CDS 47194 - 48534 1299 ## COG0593 ATPase involved in DNA replication initiation - Prom 48555 - 48614 6.6 + Prom 48900 - 48959 7.0 41 22 Tu 1 . + CDS 49053 - 49187 225 ## PROTEIN SUPPORTED gi|116493573|ref|YP_805308.1| 50S ribosomal protein L34P + Term 49191 - 49222 2.5 + Prom 49205 - 49264 6.7 42 23 Op 1 22/0.000 + CDS 49291 - 49650 391 ## COG0594 RNase P protein component 43 23 Op 2 10/0.000 + CDS 49650 - 50489 808 ## COG0706 Preprotein translocase subunit YidC + Term 50526 - 50573 10.9 + Prom 50529 - 50588 6.3 44 24 Op 1 11/0.000 + CDS 50746 - 52140 1495 ## COG0486 Predicted GTPase 45 24 Op 2 . + CDS 52156 - 54063 1609 ## COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division + Term 54199 - 54242 8.4 + Prom 54381 - 54440 7.5 46 25 Tu 1 . + CDS 54577 - 55206 438 ## COG3022 Uncharacterized protein conserved in bacteria + Term 55213 - 55267 4.3 + Prom 55229 - 55288 4.5 47 26 Op 1 . + CDS 55392 - 56132 594 ## COG2188 Transcriptional regulators 48 26 Op 2 . + CDS 56132 - 57457 1029 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases 49 26 Op 3 . + CDS 57454 - 58410 1029 ## COG1446 Asparaginase 50 26 Op 4 . + CDS 58429 - 58953 519 ## LSA1691 hypothetical protein 51 26 Op 5 . + CDS 58982 - 60295 1136 ## COG1455 Phosphotransferase system cellobiose-specific component IIC + Term 60296 - 60350 3.4 + Prom 60322 - 60381 5.0 52 27 Op 1 . + CDS 60494 - 61072 655 ## COG0681 Signal peptidase I + Term 61079 - 61120 8.1 53 27 Op 2 . + CDS 61144 - 61542 281 ## COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases + Term 61577 - 61630 4.2 54 28 Tu 1 . + CDS 61904 - 63370 927 ## COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes + Prom 63593 - 63652 6.0 55 29 Tu 1 . + CDS 63687 - 65066 1409 ## COG1757 Na+/H+ antiporter - Term 64828 - 64868 7.2 56 30 Op 1 . - CDS 65063 - 66028 684 ## PEPE_1837 lysophospholipase L1 related esterase 57 30 Op 2 . - CDS 66043 - 66609 418 ## PROTEIN SUPPORTED gi|157164512|ref|YP_001467500.1| 50S ribosomal protein L24 (BL23; 12 kDa DNA-binding protein; HPB12) 58 31 Tu 1 . - CDS 66762 - 68084 434 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 - Prom 68105 - 68164 1.6 + Prom 68465 - 68524 5.6 59 32 Op 1 . + CDS 68547 - 69077 653 ## PEPE_1834 saccharopine dehydrogenase related protein 60 32 Op 2 8/0.000 + CDS 69087 - 72650 2517 ## COG3857 ATP-dependent nuclease, subunit B 61 32 Op 3 . + CDS 72640 - 76356 3105 ## COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) + Term 76373 - 76423 2.1 + Prom 76686 - 76745 2.9 62 33 Tu 1 . + CDS 76893 - 77372 470 ## COG1576 Uncharacterized conserved protein + Term 77400 - 77442 4.2 - Term 77490 - 77534 9.1 63 34 Op 1 . - CDS 77589 - 78023 420 ## gi|270289915|ref|ZP_06196141.1| predicted protein 64 34 Op 2 . - CDS 78016 - 78225 331 ## COG1476 Predicted transcriptional regulators - Prom 78263 - 78322 8.9 + Prom 78592 - 78651 10.0 65 35 Op 1 2/0.068 + CDS 78763 - 80250 1237 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase + Prom 80263 - 80322 4.0 66 35 Op 2 7/0.000 + CDS 80346 - 81197 354 ## COG3711 Transcriptional antiterminator + Term 81226 - 81275 1.3 + Prom 81205 - 81264 5.1 67 35 Op 3 8/0.000 + CDS 81293 - 83131 1331 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific 68 35 Op 4 . + CDS 83151 - 84560 722 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase + Term 84567 - 84601 4.3 - Term 84549 - 84595 9.1 69 36 Tu 1 . - CDS 84667 - 84894 251 ## PEPE_1827 hypothetical protein - Prom 84974 - 85033 5.4 70 37 Tu 1 . + CDS 85064 - 85453 378 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Term 85529 - 85575 8.4 - Term 85518 - 85562 7.1 71 38 Op 1 . - CDS 85659 - 85853 242 ## gi|270289923|ref|ZP_06196149.1| predicted protein 72 38 Op 2 . - CDS 85935 - 86060 105 ## - Prom 86106 - 86165 4.2 73 39 Tu 1 . - CDS 86369 - 86617 57 ## gi|270289925|ref|ZP_06196151.1| predicted protein - Prom 86643 - 86702 1.6 - Term 86884 - 86925 -0.9 74 40 Op 1 . - CDS 87022 - 88209 1099 ## COG0282 Acetate kinase - Prom 88229 - 88288 4.0 - Term 88243 - 88279 -0.1 75 40 Op 2 . - CDS 88292 - 89662 1336 ## COG1012 NAD-dependent aldehyde dehydrogenases - Prom 89895 - 89954 6.2 - Term 89899 - 89937 3.3 76 41 Tu 1 . - CDS 89968 - 90390 587 ## COG1970 Large-conductance mechanosensitive channel - Prom 90523 - 90582 6.8 + Prom 90328 - 90387 4.9 77 42 Tu 1 . + CDS 90584 - 90778 91 ## - Term 90677 - 90723 7.3 78 43 Tu 1 . - CDS 90834 - 91154 363 ## COG2076 Membrane transporters of cations and cationic drugs - Prom 91181 - 91240 6.9 + Prom 91162 - 91221 6.8 79 44 Op 1 . + CDS 91398 - 92369 937 ## COG1609 Transcriptional regulators 80 44 Op 2 . + CDS 92430 - 92564 61 ## 81 44 Op 3 . + CDS 92579 - 92896 523 ## BCB4264_A2417 putative PTS system, cellobiose-specific IIB component 82 44 Op 4 1/0.205 + CDS 92886 - 94145 1335 ## COG1455 Phosphotransferase system cellobiose-specific component IIC 83 44 Op 5 . + CDS 94149 - 95243 960 ## COG3589 Uncharacterized conserved protein 84 44 Op 6 . + CDS 95264 - 95599 358 ## gi|270289934|ref|ZP_06196160.1| predicted protein + Term 95630 - 95672 6.5 + Prom 95689 - 95748 7.3 85 45 Tu 1 . + CDS 95815 - 97044 1113 ## COG3669 Alpha-L-fucosidase + Term 97066 - 97109 13.7 - Term 97048 - 97101 18.5 86 46 Op 1 . - CDS 97124 - 97501 500 ## COG3152 Predicted membrane protein 87 46 Op 2 . - CDS 97576 - 97881 252 ## gi|270289937|ref|ZP_06196163.1| predicted protein - Prom 97996 - 98055 8.6 88 47 Op 1 . + CDS 98311 - 99006 651 ## COG2315 Uncharacterized protein conserved in bacteria 89 47 Op 2 . + CDS 98999 - 99547 250 ## PROTEIN SUPPORTED gi|148360238|ref|YP_001251445.1| nucleotidyltransferase PLUS glutamate rich protein GrpB PLUS ribosomal protein alanine acetyltransferase 90 47 Op 3 . + CDS 99588 - 99869 307 ## COG3760 Uncharacterized conserved protein 91 47 Op 4 . + CDS 99866 - 100075 222 ## SGO_0838 YbaK/prolyl-tRNA synthetase associated domain-containing protein + Term 100105 - 100147 2.1 - Term 100227 - 100255 -0.0 92 48 Op 1 . - CDS 100285 - 100974 591 ## COG0693 Putative intracellular protease/amidase 93 48 Op 2 . - CDS 100977 - 101306 315 ## LSEI_1894 transcriptional regulator - Prom 101437 - 101496 8.0 + Prom 101368 - 101427 6.9 94 49 Op 1 . + CDS 101474 - 102505 986 ## COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases + Term 102518 - 102574 8.9 + Prom 102507 - 102566 3.1 95 49 Op 2 . + CDS 102593 - 102733 123 ## gi|227510766|ref|ZP_03940815.1| XRE family transcriptional regulator + Term 102801 - 102829 -0.9 96 50 Tu 1 . - CDS 102853 - 103575 324 ## gi|255974634|ref|ZP_05425220.1| conserved hypothetical protein - Prom 103669 - 103728 7.5 - TRNA 103900 - 103972 85.0 # Lys CTT 0 0 97 51 Tu 1 . + CDS 104367 - 105068 675 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain + Term 105110 - 105157 9.5 + Prom 105600 - 105659 6.7 98 52 Op 1 4/0.023 + CDS 105711 - 107498 1711 ## COG5002 Signal transduction histidine kinase 99 52 Op 2 4/0.023 + CDS 107498 - 108793 975 ## COG4863 Uncharacterized protein conserved in bacteria 100 52 Op 3 4/0.023 + CDS 108805 - 109719 879 ## COG4853 Uncharacterized protein conserved in bacteria 101 52 Op 4 3/0.023 + CDS 109762 - 110565 762 ## COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I + Prom 110578 - 110637 5.9 102 53 Tu 1 . + CDS 110683 - 111906 1110 ## COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain + Term 111968 - 112014 11.3 + Prom 111944 - 112003 6.8 103 54 Tu 1 . + CDS 112190 - 113299 1287 ## COG0381 UDP-N-acetylglucosamine 2-epimerase + Term 113458 - 113501 3.3 104 55 Tu 1 . - CDS 113322 - 113507 140 ## - Prom 113610 - 113669 3.8 + Prom 113738 - 113797 3.1 105 56 Op 1 . + CDS 113825 - 115246 1275 ## COG2211 Na+/melibiose symporter and related transporters 106 56 Op 2 . + CDS 115268 - 116821 1801 ## LVIS_0149 hypothetical protein 107 56 Op 3 3/0.023 + CDS 116845 - 118263 1001 ## COG1904 Glucuronate isomerase 108 56 Op 4 . + CDS 118288 - 119907 1492 ## COG0246 Mannitol-1-phosphate/altronate dehydrogenases 109 56 Op 5 3/0.023 + CDS 119925 - 120914 887 ## COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases 110 56 Op 6 . + CDS 120934 - 122478 1282 ## COG1070 Sugar (pentulose and hexulose) kinases + Term 122519 - 122570 14.0 + Prom 122580 - 122639 5.8 111 57 Tu 1 . + CDS 122672 - 123589 551 ## COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases + Term 123653 - 123706 2.5 112 58 Tu 1 . - CDS 123644 - 124516 681 ## LSA0541 XRE family DNA-binding protein - Prom 124545 - 124604 5.0 113 59 Tu 1 . + CDS 124590 - 124727 165 ## + Term 124782 - 124845 10.1 + Prom 124936 - 124995 5.6 114 60 Op 1 . + CDS 125033 - 125746 274 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 115 60 Op 2 . + CDS 125712 - 125903 191 ## gi|270289960|ref|ZP_06196186.1| ABC transporter 116 60 Op 3 . + CDS 125896 - 126660 610 ## EUBREC_3040 hypothetical protein 117 60 Op 4 . + CDS 126667 - 127386 182 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 118 60 Op 5 . + CDS 127407 - 128108 550 ## EF1334 AgrC domain-containing protein + Term 128245 - 128282 -1.0 119 61 Op 1 . - CDS 128135 - 129406 859 ## EF1335 sensor histidine kinase, putative 120 61 Op 2 . - CDS 129415 - 130122 654 ## COG3279 Response regulator of the LytR/AlgR family - Prom 130168 - 130227 9.2 121 62 Tu 1 . - CDS 130242 - 130613 286 ## COG0789 Predicted transcriptional regulators - Prom 130639 - 130698 7.6 + Prom 130664 - 130723 7.8 122 63 Tu 1 . + CDS 130760 - 131140 377 ## COG0599 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit + Term 131199 - 131240 8.4 - Term 131292 - 131338 -0.6 123 64 Tu 1 . - CDS 131394 - 132410 939 ## COG1609 Transcriptional regulators - Prom 132518 - 132577 7.2 + Prom 132469 - 132528 10.6 124 65 Tu 1 . + CDS 132584 - 133483 778 ## COG1023 Predicted 6-phosphogluconate dehydrogenase + Term 133682 - 133727 2.5 + Prom 133756 - 133815 11.2 125 66 Tu 1 . + CDS 133835 - 135631 2046 ## Bcer98_1097 hypothetical protein + Prom 135644 - 135703 6.2 126 67 Op 1 . + CDS 135747 - 135833 93 ## 127 67 Op 2 . + CDS 135826 - 136047 179 ## + Term 136078 - 136112 0.1 128 68 Tu 1 . - CDS 136102 - 136944 566 ## COG0500 SAM-dependent methyltransferases - Prom 137002 - 137061 5.0 + Prom 137032 - 137091 5.2 129 69 Op 1 . + CDS 137131 - 137451 365 ## PEPE_1781 ArsR family transcriptional regulator 130 69 Op 2 . + CDS 137521 - 140718 3480 ## COG1511 Predicted membrane protein + Term 140729 - 140768 5.7 + Prom 140738 - 140797 3.3 131 70 Tu 1 . + CDS 140851 - 141495 625 ## PEPE_1779 hypothetical protein + Term 141507 - 141553 12.0 - Term 141495 - 141541 12.0 132 71 Tu 1 . - CDS 141600 - 142328 655 ## COG2188 Transcriptional regulators - Prom 142398 - 142457 8.6 + Prom 142347 - 142406 9.4 133 72 Op 1 8/0.000 + CDS 142469 - 143842 917 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase 134 72 Op 2 . + CDS 143867 - 145213 1215 ## COG1455 Phosphotransferase system cellobiose-specific component IIC + Term 145221 - 145263 6.3 135 73 Op 1 . + CDS 145280 - 145387 59 ## 136 73 Op 2 1/0.205 + CDS 145436 - 146422 872 ## COG0095 Lipoate-protein ligase A 137 73 Op 3 28/0.000 + CDS 146434 - 147552 1081 ## COG1071 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit 138 73 Op 4 24/0.000 + CDS 147555 - 148535 1017 ## COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit 139 73 Op 5 30/0.000 + CDS 148528 - 150147 1812 ## COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes 140 73 Op 6 . + CDS 150150 - 151556 732 ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 + Term 151602 - 151651 -0.6 + Prom 151647 - 151706 3.1 141 74 Tu 1 . + CDS 151730 - 152755 832 ## COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases + Term 152796 - 152846 9.0 + Prom 152757 - 152816 2.1 142 75 Tu 1 . + CDS 152879 - 153094 76 ## - Term 153005 - 153061 10.1 143 76 Tu 1 . - CDS 153078 - 153581 552 ## COG4708 Predicted membrane protein - Prom 153677 - 153736 4.6 + Prom 153725 - 153784 4.5 144 77 Op 1 . + CDS 153835 - 154713 918 ## COG2017 Galactose mutarotase and related enzymes 145 77 Op 2 . + CDS 154789 - 156297 996 ## PEPE_1762 hypothetical protein + Term 156367 - 156413 11.4 - Term 156462 - 156501 -0.0 146 78 Tu 1 . - CDS 156569 - 156859 392 ## COG4841 Uncharacterized protein conserved in bacteria - Prom 156933 - 156992 5.4 147 79 Op 1 . + CDS 157374 - 157769 559 ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA 148 79 Op 2 . + CDS 157775 - 159802 1160 ## PEPE_1760 hypothetical protein 149 79 Op 3 13/0.000 + CDS 159823 - 160317 590 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 150 79 Op 4 13/0.000 + CDS 160338 - 161255 1168 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 151 79 Op 5 . + CDS 161239 - 162069 843 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID + Prom 162071 - 162130 2.3 152 80 Op 1 7/0.000 + CDS 162153 - 162887 911 ## COG2188 Transcriptional regulators 153 80 Op 2 9/0.000 + CDS 162911 - 164086 1245 ## COG2222 Predicted phosphosugar isomerases 154 80 Op 3 . + CDS 164097 - 165242 1270 ## COG1820 N-acetylglucosamine-6-phosphate deacetylase + Term 165270 - 165313 0.6 + Prom 165558 - 165617 7.4 155 81 Op 1 . + CDS 165834 - 166040 320 ## PEPE_1751 hypothetical protein 156 81 Op 2 . + CDS 166096 - 166323 406 ## PEPE_1750 hypothetical protein + Term 166336 - 166383 10.3 - Term 166324 - 166371 10.3 157 82 Op 1 2/0.068 - CDS 166458 - 167498 1032 ## COG2017 Galactose mutarotase and related enzymes 158 82 Op 2 2/0.068 - CDS 167509 - 168864 1655 ## COG0477 Permeases of the major facilitator superfamily - Prom 168931 - 168990 10.6 159 83 Tu 1 . - CDS 168995 - 170155 1090 ## COG1940 Transcriptional regulator/sugar kinase - Prom 170278 - 170337 7.2 + Prom 170288 - 170347 4.3 160 84 Op 1 11/0.000 + CDS 170416 - 171756 1292 ## COG2115 Xylose isomerase + Term 171775 - 171808 3.6 161 84 Op 2 . + CDS 171821 - 173326 1453 ## COG1070 Sugar (pentulose and hexulose) kinases + Prom 173346 - 173405 5.7 162 84 Op 3 . + CDS 173426 - 174337 708 ## COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain + Prom 174361 - 174420 5.2 163 85 Op 1 3/0.023 + CDS 174440 - 175900 1331 ## COG2211 Na+/melibiose symporter and related transporters 164 85 Op 2 . + CDS 175929 - 177545 1146 ## COG3507 Beta-xylosidase + Term 177555 - 177608 4.7 + Prom 177668 - 177727 4.8 165 86 Tu 1 . + CDS 177776 - 177988 260 ## PEPE_1749 hypothetical protein + Term 178023 - 178072 11.6 166 87 Op 1 6/0.000 + CDS 178434 - 179636 1045 ## COG2199 FOG: GGDEF domain 167 87 Op 2 . + CDS 179648 - 180376 590 ## COG2200 FOG: EAL domain + Term 180488 - 180532 3.1 - Term 180476 - 180519 -0.9 168 88 Tu 1 . - CDS 180544 - 181386 834 ## COG0702 Predicted nucleoside-diphosphate-sugar epimerases - Prom 181537 - 181596 5.3 + Prom 181534 - 181593 9.6 169 89 Tu 1 . + CDS 181649 - 182233 310 ## Shel_04470 transcriptional regulator, TetR family 170 90 Op 1 . - CDS 182353 - 182757 183 ## - Prom 182782 - 182841 6.7 - Term 182781 - 182823 4.1 171 90 Op 2 . - CDS 182850 - 184268 1659 ## COG4690 Dipeptidase - Prom 184293 - 184352 8.0 + Prom 184300 - 184359 7.4 172 91 Tu 1 . + CDS 184385 - 184993 403 ## COG2231 Uncharacterized protein related to Endonuclease III - Term 184964 - 185010 12.2 173 92 Op 1 36/0.000 - CDS 185082 - 186887 1527 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 174 92 Op 2 . - CDS 186900 - 187622 326 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) - Prom 187691 - 187750 5.4 + Prom 187655 - 187714 9.0 175 93 Tu 1 . + CDS 187824 - 188114 340 ## PEPE_1742 hypothetical protein 176 94 Tu 1 . - CDS 188111 - 188674 633 ## COG1611 Predicted Rossmann fold nucleotide-binding protein - Prom 188817 - 188876 6.4 + Prom 188793 - 188852 5.9 177 95 Tu 1 . + CDS 188979 - 190904 1431 ## COG1835 Predicted acyltransferases + Term 191006 - 191049 5.2 - Term 191130 - 191174 -0.5 178 96 Op 1 . - CDS 191221 - 191943 402 ## PEPE_1739 hypothetical protein 179 96 Op 2 . - CDS 191966 - 192175 235 ## PEPE_1738 hypothetical protein 180 96 Op 3 . - CDS 192240 - 192869 231 ## PROTEIN SUPPORTED gi|223039927|ref|ZP_03610210.1| ribosomal protein L22 - Prom 192946 - 193005 4.7 + Prom 192810 - 192869 3.1 181 97 Op 1 45/0.000 + CDS 193051 - 193932 245 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 182 97 Op 2 6/0.000 + CDS 193925 - 194683 457 ## COG0842 ABC-type multidrug transport system, permease component 183 97 Op 3 19/0.000 + CDS 194676 - 195776 664 ## COG4585 Signal transduction histidine kinase 184 97 Op 4 . + CDS 195780 - 196283 620 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain + Term 196519 - 196562 1.6 - Term 196377 - 196434 -0.0 185 98 Tu 1 . - CDS 196580 - 198052 1279 ## COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase - Prom 198204 - 198263 5.4 + Prom 197984 - 198043 5.6 186 99 Tu 1 . + CDS 198259 - 198795 562 ## PEPE_1730 hypothetical protein + Term 198935 - 198965 1.3 187 100 Tu 1 . - CDS 199002 - 199562 417 ## COG0791 Cell wall-associated hydrolases (invasion-associated proteins) - Prom 199623 - 199682 5.5 + Prom 199527 - 199586 3.9 188 101 Tu 1 . + CDS 199649 - 202000 2095 ## COG1199 Rad3-related DNA helicases + Term 202044 - 202089 3.2 + Prom 202063 - 202122 11.1 189 102 Tu 1 . + CDS 202165 - 203436 1604 ## COG1972 Nucleoside permease + Term 203465 - 203495 1.3 190 103 Tu 1 . - CDS 203367 - 203546 56 ## - Prom 203616 - 203675 5.2 + Prom 203443 - 203502 5.5 191 104 Tu 1 . + CDS 203537 - 204451 1124 ## COG1957 Inosine-uridine nucleoside N-ribohydrolase + Term 204502 - 204545 6.5 192 105 Tu 1 . - CDS 204554 - 205027 424 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - Prom 205210 - 205269 4.9 + Prom 205036 - 205095 6.1 193 106 Op 1 4/0.023 + CDS 205135 - 205866 664 ## COG0357 Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division 194 106 Op 2 1/0.205 + CDS 205876 - 206727 677 ## COG1475 Predicted transcriptional regulators 195 106 Op 3 4/0.023 + CDS 206741 - 206941 309 ## COG4481 Uncharacterized protein conserved in bacteria + Prom 207239 - 207298 4.8 196 107 Op 1 . + CDS 207357 - 208463 1448 ## COG0012 Predicted GTPase, probable translation factor 197 107 Op 2 . + CDS 208490 - 209188 708 ## COG4858 Uncharacterized membrane-bound protein conserved in bacteria 198 107 Op 3 . + CDS 209215 - 210357 1152 ## COG0516 IMP dehydrogenase/GMP reductase + Term 210391 - 210430 0.5 + Prom 210460 - 210519 5.0 199 108 Tu 1 . + CDS 210602 - 211096 371 ## COG0350 Methylated DNA-protein cysteine methyltransferase + Prom 211115 - 211174 3.2 200 109 Op 1 40/0.000 + CDS 211213 - 211902 806 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 201 109 Op 2 . + CDS 211922 - 213070 923 ## COG0642 Signal transduction histidine kinase + Term 213195 - 213241 10.9 + Prom 213303 - 213362 2.4 202 110 Tu 1 . + CDS 213382 - 214629 919 ## COG1686 D-alanyl-D-alanine carboxypeptidase + Prom 214757 - 214816 5.4 203 111 Op 1 . + CDS 214847 - 215635 770 ## COG1296 Predicted branched-chain amino acid permease (azaleucine resistance) 204 111 Op 2 . + CDS 215657 - 215989 358 ## PEPE_1713 hypothetical protein + Term 216015 - 216062 2.1 + Prom 215991 - 216050 11.1 205 112 Op 1 . + CDS 216264 - 217547 858 ## lp_2145 extracellular protein 206 112 Op 2 . + CDS 217548 - 218171 364 ## LVIS_0892 hypothetical protein 207 112 Op 3 . + CDS 218173 - 219513 865 ## COG1215 Glycosyltransferases, probably involved in cell wall biogenesis 208 112 Op 4 . + CDS 219515 - 219886 377 ## COG0720 6-pyruvoyl-tetrahydropterin synthase 209 112 Op 5 . + CDS 219905 - 221458 682 ## LCK_01280 integral membrane protein + Term 221540 - 221600 11.7 - Term 221535 - 221581 12.3 210 113 Tu 1 . - CDS 221630 - 222073 305 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - Prom 222104 - 222163 4.2 - Term 222406 - 222454 14.6 211 114 Tu 1 . - CDS 222495 - 223670 1077 ## COG2230 Cyclopropane fatty acid synthase and related methyltransferases - Prom 223698 - 223757 4.5 + Prom 223660 - 223719 6.7 212 115 Tu 1 . + CDS 223825 - 224715 729 ## PEPE_1711 lipoprotein + Term 224852 - 224911 17.2 + Prom 224814 - 224873 6.4 213 116 Op 1 . + CDS 224926 - 226212 1227 ## COG0148 Enolase + Prom 226214 - 226273 5.8 214 116 Op 2 . + CDS 226307 - 226996 794 ## COG0588 Phosphoglycerate mutase 1 + Term 227003 - 227075 11.1 - Term 227010 - 227045 2.6 215 117 Tu 1 . - CDS 227064 - 228017 708 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily - Prom 228069 - 228128 7.3 + Prom 227856 - 227915 3.8 216 118 Op 1 . + CDS 227944 - 228165 129 ## 217 118 Op 2 . + CDS 228172 - 229062 598 ## COG0583 Transcriptional regulator + Prom 229137 - 229196 6.0 218 119 Tu 1 . + CDS 229233 - 229922 677 ## COG3382 Uncharacterized conserved protein + Term 230020 - 230066 6.2 + Prom 230080 - 230139 6.0 219 120 Op 1 . + CDS 230200 - 231063 288 ## LAR_1792 hypothetical protein 220 120 Op 2 . + CDS 231066 - 232253 741 ## COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities + Term 232309 - 232355 15.2 - Term 232297 - 232343 14.4 221 121 Tu 1 . - CDS 232392 - 232868 450 ## COG1959 Predicted transcriptional regulator + Prom 232875 - 232934 4.2 222 122 Tu 1 . + CDS 232987 - 233841 828 ## COG0702 Predicted nucleoside-diphosphate-sugar epimerases + Term 233939 - 233972 0.4 223 123 Op 1 . - CDS 233952 - 234554 706 ## COG0406 Fructose-2,6-bisphosphatase 224 123 Op 2 . - CDS 234635 - 236497 1054 ## PEPE_1702 hypothetical protein - Prom 236737 - 236796 9.4 + Prom 236583 - 236642 8.9 225 124 Op 1 1/0.205 + CDS 236830 - 237909 851 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 226 124 Op 2 . + CDS 237909 - 239873 1325 ## COG1215 Glycosyltransferases, probably involved in cell wall biogenesis 227 124 Op 3 . + CDS 239904 - 241760 1197 ## PEPE_1702 hypothetical protein + Prom 241764 - 241823 5.4 228 124 Op 4 . + CDS 241843 - 242010 243 ## + Term 242136 - 242186 6.6 + Prom 242115 - 242174 3.9 229 125 Tu 1 . + CDS 242240 - 243583 1430 ## COG1914 Mn2+ and Fe2+ transporters of the NRAMP family + Term 243629 - 243668 8.2 + Prom 243784 - 243843 8.1 230 126 Op 1 13/0.000 + CDS 243865 - 244863 897 ## COG1609 Transcriptional regulators + Term 244930 - 244978 0.1 + Prom 244907 - 244966 8.9 231 126 Op 2 6/0.000 + CDS 244995 - 245900 1169 ## COG0524 Sugar kinases, ribokinase family 232 126 Op 3 1/0.205 + CDS 245918 - 246313 392 ## COG1869 ABC-type ribose transport system, auxiliary component + Term 246430 - 246470 6.6 + Prom 246344 - 246403 3.9 233 127 Tu 1 . + CDS 246480 - 247364 894 ## COG4975 Putative glucose uptake permease + Term 247405 - 247447 6.1 + Prom 247483 - 247542 6.0 234 128 Tu 1 . + CDS 247573 - 248736 1062 ## COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family + Term 248802 - 248842 5.9 + Prom 248922 - 248981 3.5 235 129 Op 1 9/0.000 + CDS 249026 - 249646 462 ## COG0583 Transcriptional regulator 236 129 Op 2 1/0.205 + CDS 249597 - 249911 133 ## COG0583 Transcriptional regulator + Term 249950 - 249995 6.0 237 130 Op 1 . + CDS 250001 - 250510 516 ## COG0716 Flavodoxins 238 130 Op 2 1/0.205 + CDS 250524 - 250940 430 ## COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain 239 130 Op 3 . + CDS 250942 - 251259 462 ## COG0599 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit + Term 251313 - 251361 8.2 - Term 251415 - 251460 10.1 240 131 Tu 1 . - CDS 251504 - 252211 629 ## COG0789 Predicted transcriptional regulators - Prom 252279 - 252338 8.2 + Prom 252592 - 252651 4.3 241 132 Op 1 . + CDS 252751 - 252873 69 ## 242 132 Op 2 2/0.068 + CDS 252897 - 253349 460 ## COG1846 Transcriptional regulators 243 132 Op 3 . + CDS 253361 - 253894 438 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Term 253942 - 253978 1.5 - Term 253760 - 253798 3.1 244 133 Tu 1 . - CDS 253891 - 254301 347 ## COG0242 N-formylmethionyl-tRNA deformylase - Prom 254544 - 254603 5.8 + Prom 254385 - 254444 2.2 245 134 Tu 1 . + CDS 254515 - 255228 861 ## COG0284 Orotidine-5'-phosphate decarboxylase + Term 255244 - 255285 1.3 - Term 255337 - 255383 6.3 246 135 Tu 1 . - CDS 255528 - 256337 696 ## COG0561 Predicted hydrolases of the HAD superfamily - Prom 256466 - 256525 7.5 + Prom 256326 - 256385 8.0 247 136 Op 1 . + CDS 256457 - 256582 176 ## 248 136 Op 2 . + CDS 256634 - 256726 60 ## + Prom 256730 - 256789 4.2 249 136 Op 3 . + CDS 256815 - 257771 917 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase + Term 257848 - 257911 7.6 + Prom 258146 - 258205 3.4 250 137 Op 1 . + CDS 258269 - 258523 434 ## COG2261 Predicted membrane protein 251 137 Op 2 . + CDS 258534 - 259079 612 ## PEPE_1671 hypothetical protein 252 137 Op 3 . + CDS 259129 - 259293 264 ## gi|270290084|ref|ZP_06196310.1| predicted protein 253 137 Op 4 . + CDS 259307 - 259429 115 ## 254 137 Op 5 . + CDS 259422 - 259838 618 ## COG1302 Uncharacterized protein conserved in bacteria 255 137 Op 6 . + CDS 259866 - 260300 560 ## COG1302 Uncharacterized protein conserved in bacteria + Term 260304 - 260374 17.5 - Term 260293 - 260357 13.7 256 138 Op 1 . - CDS 260363 - 260536 399 ## 257 138 Op 2 . - CDS 260536 - 261219 768 ## COG2249 Putative NADPH-quinone reductase (modulator of drug activity B) 258 138 Op 3 . - CDS 261222 - 261530 213 ## PEPE_1664 hypothetical protein 259 138 Op 4 . - CDS 261520 - 262230 740 ## COG2357 Uncharacterized protein conserved in bacteria - Prom 262263 - 262322 5.8 + Prom 262175 - 262234 5.4 260 139 Op 1 10/0.000 + CDS 262383 - 263375 839 ## COG2376 Dihydroxyacetone kinase 261 139 Op 2 9/0.000 + CDS 263395 - 263961 605 ## COG2376 Dihydroxyacetone kinase 262 139 Op 3 . + CDS 263961 - 264329 559 ## COG3412 Uncharacterized protein conserved in bacteria + Term 264364 - 264422 12.2 + Prom 264417 - 264476 8.6 263 140 Op 1 4/0.023 + CDS 264524 - 265123 481 ## COG1846 Transcriptional regulators 264 140 Op 2 . + CDS 265126 - 266904 229 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P + Term 267096 - 267137 9.3 - Term 267084 - 267125 9.3 265 141 Op 1 . - CDS 267246 - 268286 979 ## COG0673 Predicted dehydrogenases and related proteins - Term 268301 - 268340 7.4 266 141 Op 2 . - CDS 268407 - 269651 1382 ## COG2195 Di- and tripeptidases - Prom 269675 - 269734 6.0 + Prom 269626 - 269685 7.8 267 142 Op 1 24/0.000 + CDS 269882 - 271072 1148 ## COG1125 ABC-type proline/glycine betaine transport systems, ATPase components 268 142 Op 2 13/0.000 + CDS 271072 - 271707 705 ## COG1174 ABC-type proline/glycine betaine transport systems, permease component 269 142 Op 3 13/0.000 + CDS 271708 - 272634 675 ## COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) 270 142 Op 4 . + CDS 272634 - 273287 839 ## COG1174 ABC-type proline/glycine betaine transport systems, permease component + Term 273309 - 273344 5.1 + Prom 273470 - 273529 4.0 271 143 Op 1 . + CDS 273563 - 276268 2231 ## COG0474 Cation transport ATPase 272 143 Op 2 36/0.000 + CDS 276301 - 276723 500 ## COG1136 ABC-type antimicrobial peptide transport system, ATPase component 273 143 Op 3 . + CDS 276790 - 278238 176 ## PROTEIN SUPPORTED gi|163788031|ref|ZP_02182477.1| 50S ribosomal protein L9 + Term 278272 - 278307 5.1 + Prom 278308 - 278367 8.8 274 144 Op 1 4/0.023 + CDS 278396 - 279739 918 ## COG0402 Cytosine deaminase and related metal-dependent hydrolases 275 144 Op 2 . + CDS 279762 - 281087 285 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 + Term 281256 - 281314 2.4 + Prom 281107 - 281166 5.8 276 145 Tu 1 . + CDS 281377 - 283008 1592 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains + Prom 283059 - 283118 6.8 277 146 Tu 1 . + CDS 283162 - 283608 662 ## PEPE_1648 transcriptional regulator + Term 283622 - 283664 5.3 + Prom 283648 - 283707 8.8 278 147 Tu 1 . + CDS 283744 - 284655 1057 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily + Term 284725 - 284771 13.7 + Prom 284881 - 284940 7.4 279 148 Tu 1 . + CDS 285044 - 285469 422 ## COG0105 Nucleoside diphosphate kinase + Term 285510 - 285560 12.1 + Prom 285766 - 285825 7.9 280 149 Tu 1 . + CDS 285946 - 286368 553 ## COG0071 Molecular chaperone (small heat shock protein) + Term 286416 - 286457 6.1 - Term 286535 - 286574 -0.7 281 150 Tu 1 . - CDS 286687 - 287367 686 ## COG2200 FOG: EAL domain - Prom 287442 - 287501 7.7 + Prom 287404 - 287463 11.0 282 151 Op 1 . + CDS 287543 - 288889 1219 ## COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases 283 151 Op 2 . + CDS 288919 - 289473 495 ## COG0110 Acetyltransferase (isoleucine patch superfamily) + Prom 289562 - 289621 5.1 284 152 Op 1 . + CDS 289678 - 291246 1292 ## COG1292 Choline-glycine betaine transporter 285 152 Op 2 . + CDS 291318 - 291791 422 ## COG1854 LuxS protein involved in autoinducer AI2 synthesis + Term 291820 - 291860 1.4 + Prom 291874 - 291933 5.6 286 153 Tu 1 . + CDS 291964 - 293160 1092 ## COG0477 Permeases of the major facilitator superfamily + Term 293213 - 293260 7.6 + Prom 293299 - 293358 2.4 287 154 Tu 1 . + CDS 293389 - 293649 75 ## - Term 293430 - 293478 12.7 288 155 Tu 1 . - CDS 293576 - 295003 1428 ## COG2211 Na+/melibiose symporter and related transporters - Prom 295059 - 295118 7.2 + Prom 294995 - 295054 5.9 289 156 Tu 1 . + CDS 295289 - 297784 1736 ## COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases + Prom 297807 - 297866 5.5 290 157 Tu 1 . + CDS 297928 - 298482 542 ## PEPE_1634 hypothetical protein + Term 298501 - 298535 4.0 + Prom 298822 - 298881 3.4 291 158 Tu 1 . + CDS 298917 - 300719 2015 ## COG1164 Oligoendopeptidase F + Term 300749 - 300802 9.1 + Prom 300858 - 300917 8.4 292 159 Tu 1 . + CDS 300958 - 303081 1597 ## llmg_1503 surface protein + Term 303228 - 303277 5.9 - Term 303218 - 303262 6.1 293 160 Tu 1 . - CDS 303397 - 304248 451 ## PEPE_0070 hypothetical protein - Prom 304301 - 304360 4.9 294 161 Tu 1 . - CDS 304368 - 305234 643 ## PEPE_0070 hypothetical protein - Prom 305264 - 305323 1.6 - Term 305277 - 305321 1.1 295 162 Tu 1 . - CDS 305383 - 305982 387 ## PEPE_0069 hypothetical protein - Prom 306078 - 306137 8.3 + Prom 306144 - 306203 11.9 296 163 Op 1 . + CDS 306251 - 306763 329 ## LACR_1170 hypothetical protein 297 163 Op 2 . + CDS 306792 - 308249 1125 ## llmg_1503 surface protein + Term 308281 - 308324 8.4 298 164 Op 1 . - CDS 308564 - 309385 411 ## PEPE_0070 hypothetical protein 299 164 Op 2 . - CDS 309399 - 310130 708 ## PEPE_0069 hypothetical protein 300 165 Tu 1 . - CDS 310274 - 311035 439 ## PEPE_0070 hypothetical protein - Prom 311161 - 311220 4.5 + Prom 311042 - 311101 6.9 301 166 Tu 1 . + CDS 311152 - 311340 69 ## + Term 311351 - 311388 1.1 - Term 311734 - 311783 5.2 302 167 Op 1 . - CDS 311855 - 312712 488 ## PEPE_0070 hypothetical protein 303 167 Op 2 . - CDS 312725 - 313459 457 ## PEPE_0069 hypothetical protein 304 167 Op 3 . - CDS 313511 - 314362 424 ## PEPE_0070 hypothetical protein 305 167 Op 4 . - CDS 314394 - 315248 378 ## PEPE_0070 hypothetical protein 306 167 Op 5 . - CDS 315265 - 316008 643 ## PEPE_0069 hypothetical protein - Prom 316064 - 316123 9.0 + Prom 316197 - 316256 6.9 307 168 Tu 1 . + CDS 316296 - 318440 1442 ## llmg_1503 surface protein + Term 318502 - 318548 8.0 - Term 318549 - 318593 4.2 308 169 Op 1 4/0.023 - CDS 318673 - 319392 687 ## COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) 309 169 Op 2 5/0.023 - CDS 319407 - 321230 1981 ## COG0578 Glycerol-3-phosphate dehydrogenase 310 169 Op 3 . - CDS 321250 - 322764 1140 ## COG0554 Glycerol kinase - Prom 322792 - 322851 7.5 - Term 322964 - 323006 8.1 311 170 Tu 1 . - CDS 323031 - 323660 800 ## COG1011 Predicted hydrolase (HAD superfamily) - Prom 323691 - 323750 6.6 + Prom 323706 - 323765 4.8 312 171 Tu 1 . + CDS 323795 - 325318 1297 ## COG0038 Chloride channel protein EriC + Term 325339 - 325388 7.0 + Prom 325534 - 325593 4.8 313 172 Tu 1 . + CDS 325690 - 326604 957 ## COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) + Term 326646 - 326694 13.1 - Term 326799 - 326845 6.6 314 173 Tu 1 . - CDS 326886 - 327758 545 ## COG0583 Transcriptional regulator - Prom 327794 - 327853 6.5 + Prom 327769 - 327828 9.1 315 174 Op 1 1/0.205 + CDS 327895 - 329523 1984 ## COG0281 Malic enzyme 316 174 Op 2 . + CDS 329542 - 330930 1256 ## COG0114 Fumarase + Term 330964 - 331008 2.8 + Prom 330947 - 331006 3.4 317 175 Tu 1 . + CDS 331152 - 332123 999 ## COG0679 Predicted permeases + Term 332156 - 332206 12.1 - Term 332391 - 332438 9.6 318 176 Op 1 . - CDS 332515 - 332790 266 ## LGG_00390 hypothetical protein 319 176 Op 2 . - CDS 332806 - 333036 107 ## LCABL_04680 hypothetical protein 320 176 Op 3 . - CDS 333021 - 333164 90 ## - Prom 333185 - 333244 8.0 + Prom 333339 - 333398 5.6 321 177 Tu 1 . + CDS 333634 - 335544 1793 ## COG1193 Mismatch repair ATPase (MutS family) + Term 335586 - 335638 8.7 - Term 335659 - 335717 9.1 322 178 Tu 1 . - CDS 335755 - 336255 497 ## COG1881 Phospholipid-binding protein - Prom 336367 - 336426 4.2 + Prom 336206 - 336265 5.5 323 179 Op 1 . + CDS 336381 - 337151 567 ## COG0708 Exonuclease III 324 179 Op 2 . + CDS 337175 - 339202 1863 ## COG0272 NAD-dependent DNA ligase (contains BRCT domain type II) + Term 339272 - 339305 1.5 325 180 Tu 1 . - CDS 339213 - 339632 259 ## COG2246 Predicted membrane protein - Prom 339703 - 339762 6.8 + Prom 339542 - 339601 5.5 326 181 Tu 1 . + CDS 339731 - 340657 823 ## COG0463 Glycosyltransferases involved in cell wall biogenesis + Prom 340937 - 340996 6.6 327 182 Tu 1 . + CDS 341168 - 342415 548 ## PEPE_1605 hypothetical protein + Prom 342417 - 342476 13.8 328 183 Op 1 26/0.000 + CDS 342571 - 343386 709 ## COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component 329 183 Op 2 . + CDS 343402 - 344472 983 ## COG1134 ABC-type polysaccharide/polyol phosphate transport system, ATPase component 330 183 Op 3 . + CDS 344532 - 347063 1432 ## COG1887 Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC + Term 347086 - 347125 6.4 + Prom 347114 - 347173 8.5 331 184 Op 1 . + CDS 347256 - 348404 666 ## COG1680 Beta-lactamase class C and other penicillin binding proteins 332 184 Op 2 . + CDS 348477 - 349682 747 ## COG1887 Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC + Term 349823 - 349862 8.6 - Term 349811 - 349850 8.6 333 185 Op 1 . - CDS 349872 - 350636 826 ## PEPE_1596 hypothetical protein 334 185 Op 2 . - CDS 350636 - 352114 1157 ## COG0477 Permeases of the major facilitator superfamily - Prom 352189 - 352248 6.4 + Prom 352162 - 352221 9.2 335 186 Tu 1 . + CDS 352266 - 352718 413 ## PEPE_1594 transcriptional regulator + Term 352935 - 352976 3.1 336 187 Tu 1 . - CDS 352897 - 353094 123 ## + Prom 352871 - 352930 3.2 337 188 Tu 1 . + CDS 353021 - 353602 612 ## COG3601 Predicted membrane protein + Term 353646 - 353692 11.8 + Prom 353886 - 353945 4.9 338 189 Tu 1 . + CDS 354030 - 354554 386 ## COG1268 Uncharacterized conserved protein + Term 354593 - 354623 -0.3 + Prom 354707 - 354766 5.4 339 190 Op 1 . + CDS 354841 - 354990 70 ## 340 190 Op 2 6/0.000 + CDS 355005 - 356531 1707 ## COG1020 Non-ribosomal peptide synthetase modules and related proteins 341 190 Op 3 7/0.000 + CDS 356531 - 357733 722 ## COG1696 Predicted membrane protein involved in D-alanine export 342 190 Op 4 6/0.000 + CDS 357750 - 357992 356 ## COG0236 Acyl carrier protein 343 190 Op 5 . + CDS 357985 - 359271 953 ## COG3966 Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) + Prom 359367 - 359426 3.2 344 190 Op 6 . + CDS 359458 - 360288 673 ## COG1284 Uncharacterized conserved protein + Term 360335 - 360385 13.7 - Term 360445 - 360506 10.1 345 191 Tu 1 . - CDS 360523 - 362382 1379 ## PEPE_1585 FAD(NAD)-dependent oxidoreductase - Prom 362481 - 362540 8.7 + Prom 362553 - 362612 5.5 346 192 Tu 1 . + CDS 362641 - 363279 814 ## COG0546 Predicted phosphatases + Term 363342 - 363389 12.9 - Term 363330 - 363375 12.5 347 193 Tu 1 . - CDS 363392 - 363637 201 ## PEPE_1582 hypothetical protein - Prom 363735 - 363794 11.7 + Prom 363717 - 363776 5.7 348 194 Op 1 . + CDS 363897 - 364505 316 ## COG1266 Predicted metal-dependent membrane protease 349 194 Op 2 . + CDS 364524 - 365864 1410 ## COG0534 Na+-driven multidrug efflux pump 350 194 Op 3 . + CDS 365937 - 366479 557 ## PEPE_1579 hypothetical protein + Prom 366527 - 366586 8.1 351 195 Tu 1 . + CDS 366624 - 367151 458 ## PEPE_1578 hypothetical protein + Term 367181 - 367240 12.1 - Term 367244 - 367295 9.1 352 196 Tu 1 . - CDS 367340 - 368299 718 ## COG1940 Transcriptional regulator/sugar kinase - Prom 368319 - 368378 6.7 - Term 368936 - 368984 10.8 353 197 Op 1 3/0.023 - CDS 369028 - 369840 917 ## COG0561 Predicted hydrolases of the HAD superfamily 354 197 Op 2 . - CDS 369851 - 371191 1081 ## COG1078 HD superfamily phosphohydrolases - Prom 371297 - 371356 8.8 + Prom 371249 - 371308 7.6 355 198 Op 1 . + CDS 371350 - 371787 438 ## PEPE_1573 hypothetical protein 356 198 Op 2 5/0.023 + CDS 371832 - 372371 634 ## COG3343 DNA-directed RNA polymerase, delta subunit + Term 372463 - 372501 9.5 + Prom 372474 - 372533 5.5 357 199 Tu 1 . + CDS 372584 - 374188 1812 ## COG0504 CTP synthase (UTP-ammonia lyase) + Term 374213 - 374252 6.1 + Prom 374263 - 374322 6.6 358 200 Op 1 1/0.205 + CDS 374383 - 375654 1220 ## COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase 359 200 Op 2 9/0.000 + CDS 375682 - 376956 1125 ## COG1158 Transcription termination factor + Prom 376960 - 377019 5.1 360 200 Op 3 . + CDS 377057 - 377302 421 ## PROTEIN SUPPORTED gi|116493296|ref|YP_805031.1| 50S ribosomal protein L31P + Term 377321 - 377373 10.1 - Term 377317 - 377353 7.5 361 201 Tu 1 . - CDS 377398 - 378624 1190 ## COG0477 Permeases of the major facilitator superfamily - Prom 378667 - 378726 9.5 + Prom 378615 - 378674 9.0 362 202 Op 1 . + CDS 378706 - 379395 753 ## COG3764 Sortase (surface protein transpeptidase) 363 202 Op 2 3/0.023 + CDS 379467 - 380048 593 ## COG1704 Uncharacterized conserved protein 364 202 Op 3 . + CDS 380071 - 380967 1007 ## COG0501 Zn-dependent protease with chaperone function 365 202 Op 4 . + CDS 381015 - 381800 553 ## PEPE_1563 hypothetical protein + Prom 381933 - 381992 5.9 366 203 Tu 1 . + CDS 382021 - 383400 1450 ## COG0770 UDP-N-acetylmuramyl pentapeptide synthase + Term 383410 - 383441 1.5 + Prom 383701 - 383760 6.7 367 204 Tu 1 . + CDS 383848 - 385383 1857 ## COG0513 Superfamily II DNA and RNA helicases + Prom 385495 - 385554 4.1 368 205 Op 1 5/0.023 + CDS 385598 - 385951 328 ## COG0736 Phosphopantetheinyl transferase (holo-ACP synthase) 369 205 Op 2 . + CDS 385954 - 387081 904 ## COG0787 Alanine racemase 370 205 Op 3 . + CDS 387136 - 387384 343 ## PEPE_1558 hypothetical protein 371 205 Op 4 . + CDS 387413 - 387775 210 ## COG2337 Growth inhibitor + Term 387778 - 387812 1.7 - Term 387803 - 387848 10.5 372 206 Op 1 . - CDS 387872 - 388519 633 ## COG0517 FOG: CBS domain 373 206 Op 2 . - CDS 388575 - 389948 1450 ## COG1376 Uncharacterized protein conserved in bacteria - Prom 390009 - 390068 6.0 - Term 390126 - 390165 8.4 374 207 Tu 1 . - CDS 390183 - 391154 1056 ## COG0039 Malate/lactate dehydrogenases - Prom 391197 - 391256 7.2 + Prom 391156 - 391215 4.9 375 208 Op 1 7/0.000 + CDS 391397 - 391954 698 ## COG0193 Peptidyl-tRNA hydrolase 376 208 Op 2 2/0.068 + CDS 391965 - 395462 2995 ## COG1197 Transcription-repair coupling factor (superfamily II helicase) 377 208 Op 3 1/0.205 + CDS 395499 - 397055 1325 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid 378 208 Op 4 . + CDS 397052 - 397321 298 ## COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) 379 208 Op 5 . + CDS 397398 - 397766 409 ## PEPE_1549 septum formation initiator + Term 397822 - 397874 10.1 + Prom 397944 - 398003 8.2 380 209 Op 1 2/0.068 + CDS 398033 - 398494 339 ## PROTEIN SUPPORTED gi|218290661|ref|ZP_03494752.1| RNA binding S1 domain protein 381 209 Op 2 10/0.000 + CDS 398494 - 399867 1073 ## COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control 382 209 Op 3 11/0.000 + CDS 399857 - 400393 566 ## COG0634 Hypoxanthine-guanine phosphoribosyltransferase + Prom 400401 - 400460 4.1 383 209 Op 4 1/0.205 + CDS 400487 - 402571 1321 ## PROTEIN SUPPORTED gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 + Term 402580 - 402623 5.8 384 210 Tu 1 2/0.068 + CDS 402635 - 403513 888 ## COG1281 Disulfide bond chaperones of the HSP33 family + Prom 403525 - 403584 4.8 385 211 Op 1 3/0.023 + CDS 403606 - 404613 514 ## PROTEIN SUPPORTED gi|42631300|ref|ZP_00156838.1| COG0042: tRNA-dihydrouridine synthase 386 211 Op 2 . + CDS 404679 - 406175 1590 ## COG1190 Lysyl-tRNA synthetase (class II) + Term 406184 - 406232 9.8 Predicted protein(s) >gi|269838509|gb|ACXB01000002.1| GENE 1 3 - 3963 3534 1320 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0117 NR:ns ## KEGG: PEPE_0117 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 1301 1 1276 1676 549 37.0 1e-154 MNKNPKNHRDVVDSKIGNYKMYKVNKHWVFASALMLSMLGAGMMQTDTAAHADTVNEPQT EMVHKVAEAKEAQSAVVTPAKEATSASSAATKAATPAKEAQSTTQNGSAVKKEQSAAPSS AASSAAPTKAASSATDKSATSAATKTDSATKAEQKKADASNSAAKAEQKNDASANKNEQK TAKADSAASSSAAKPAADTKAQTNNSSAAKPADNSSASNSDASVKKEGVSTDEIGASGLD TNDQNDINNDAAAKAKADVDAKTDAKDVDKNQKVDKDKTAKDRNVRAGGSALEDGNLDIS GSAVSGLIDNGDGTYSGNLKLTYHGSAVVAQFGEQSNIGIKVPAELVDLFNRINATGDWT KYLTGNIKFTIDFIANITRNYTNDDISFDGTNLVFKNPAITDLGLKDTLANFNFNIGQAV TDFDLDIPDSNDNYLFEAALIEPSNIIDWHAIGDYAGRASLHTNHLMPHTDVLEAPFVEQ PVYDNQTTVTGTARPNAEITITLENGSTITDYADRNGNYSIEIPAQKAGGQISVIQTVNG KESPATIVTITEAPEVIDNPTINAPHAGSRTITGTGVAGDSIQVYAPGADGNYELIGTTL VLADGTWSMGIGSQFNLVEGEQIYAVQSKGNGKSDKVYATVLPEVVVDAPVIHDVTEGDK VITGTGKVGAEVVVRFGNGSHTEIGRAIVGADGTWTVDASHSVLNAGDLITATQTYDDVT SDEATVAVKAQEVVDAPVINDITEGDKVITGKGEAGDEIRVYFEDGDVQIGKTVIVRADG TWSVDASHYNLTEGTVVYAVQTRNNVDSEPVYSTVKGREEVAKPAINPITEGDKVITGTG VAGDEIRVYFQNGDAQIGQTVTVKADGTWEVDASLYNLTEGTIVYAIQSRGGMDSDKAYQ TVLPKPEEIPAPTFDNVREGASTITGRGEAGDTVYVYVKGTNGGDDILVGHATVRADGTW SVATGRVNVYEGDQLYAYQTNGDQQSSNGTTTVLPKQEEIPAPTFDEVREGASTITGRGE AGDTVYVYVKGTNGNDDILVGHATVKADGTWSLATGRVNLFEGDQLYAYQTNGDQQSSDG TTTVLPKPEELPAPTFDEVREGATTITGRGEAGDIVYVYVKGTNGSDDVLVGHATVKADG TWSVNTGRVSLYAGDQLYAYQTNGDQKSTNGTAVVLPKPEELPAPTFNDVKEGDTTITGK GEAGDTVYVYVKGTNGADDVLIGHTTVKADGTWSLATGRVNLYEGDQLYAYQTNGDQQST NGTTTVLPKPEELPAPTFNDVKEGDTTITGKGEAGDTVYVYVKGTNGADDVLIGHTTVKA >gi|269838509|gb|ACXB01000002.1| GENE 2 4385 - 5023 609 212 aa, chain - ## HITS:1 COG:lin1978 KEGG:ns NR:ns ## COG: lin1978 COG1272 # Protein_GI_number: 16801044 # Func_class: R General function prediction only # Function: Predicted membrane protein, hemolysin III homolog # Organism: Listeria innocua # 12 208 11 206 210 157 46.0 1e-38 MQKVQRSQVIYEIWNAITHGIAFVASLGLVALLIMKSISNGLPTRDTISLVIYGATLLAL YLASTLFHCLAFTKAKRIFQIIDHSNIFLLIAGTYTPYCIIFLDRRSGIIMLSAIWTMAI AGIITHILSKGRFQKVETTIYVVMGWLCLLAGKTLYANLSPLGFWLLVAGGVTFTVGAII YSFPKIPGLHLIWHFFVMAGTTLMFISIYVNI >gi|269838509|gb|ACXB01000002.1| GENE 3 5147 - 5599 363 150 aa, chain + ## HITS:1 COG:no KEGG:PEPE_0036 NR:ns ## KEGG: PEPE_0036 # Name: not_defined # Def: BS_ykrK family protein # Organism: P.pentosaceus # Pathway: not_defined # 1 149 1 149 152 195 69.0 4e-49 MNTEKYQQWLADFKQLRLPDYQQFPDLALYMDQVIQETNRYLTPILHAEVTKTMINSYVK MGLVPHPLKKKYTAEHLALIMMISVLKTSFSLDTIKSLLATDEVEDHFNEFVRIFNHEIE HLDEAVQSFSPLEMAIRAVLYKLILERKLS >gi|269838509|gb|ACXB01000002.1| GENE 4 5739 - 8939 2746 1066 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0118 NR:ns ## KEGG: PEPE_0118 # Name: not_defined # Def: adhesion exoprotein # Organism: P.pentosaceus # Pathway: not_defined # 522 1055 801 1357 3017 188 33.0 1e-45 MNSEIKKHYKMYKAGKRWIFCGLATLGLVVGLNTVDQHAFADTVTQTSPTTEQTNAKTPK SADADKPTPQVKDNTTEKQATKVQSNSVAVNVTTRSASQTENNKPKDVNNVSKTVAKADV KADSNSKVQLSIENQLTASTTEEPENAKNNFDEKDSVVDQASPETEQNDKATNQVSSDQD VSKKEDSKAKLTSTKDQQNKVDQKKITKSDVKKDAKSSSDNIAEGTFGTSDWILDNDGML HFKTGEFGVSDVGTYPWKNYTNDILNISFDGRVIANKYSASLFAGLNNLKKIYRLENFDV SDTTDFANIFKGDHSLEHIGDVSHWVTSKTNSVVGMFEGCYNLKELDVSTWDVSNLTNLY NLFDNCKALTKLDVSRWDVSNITSFMQTFGGCYRVTELDLANWNPANVTNMSTMFSGCGA VKLDLSHFDMSNVTDYFGMLNDMSNLRVLILSKNTKIKDADMSDPLGDANKRWIAVAGGT EDTPLGDRSYSSEELMTVYNGDMADTYVIDPYETVTDSKDVTQTIHYVNQNGDSVLPDHT QVRHYNREGKNNSNTGETTWGTWTIADGENAVFDAVESPTIPGYVPDMSIVSRQPIDDAI IEMGGQEVTVTYNPIELKGSVTYWDDDENKVVSTDNLNGHFDEDGYFIITVPSGYEIDPE NNPNGYTDGQTVHFTWSTTEGANDFTINLRHKHEAVDPTDPEANRTVTQTIRYVDQNGDT IAPNHTASRHYTRTGDKDLVTGKITWGTWNIANGENAYFDAVKSPDVQGYAPDMPMISKQ PIDEAMIEMGGQEITVTYNPIELKGSVTYWDDDENKLVSTDNLNGHFDEDGYFTITVPSG YEINPENNPNGYTDGQTVHFTWSTTEGANDFTINLRHKHEAVDPSDPEASRTVTQTIHYV DQNGNPIAPDHTASRHYTRTGDKDLVTGQITWSAWTIADGENGAFDAVESPDIPGYTPDM PMISRQPIDDAMIELGGQDITVTYSPVELKGSVTYWDDEENKVVSTSKLDKSANKDADFK IAVPSNYEIDPKNNPKGYVDGQTVHFTWSAKKGANDFTINLKPKLS >gi|269838509|gb|ACXB01000002.1| GENE 5 9507 - 9827 449 106 aa, chain - ## HITS:1 COG:L124677 KEGG:ns NR:ns ## COG: L124677 COG2076 # Protein_GI_number: 15672104 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane transporters of cations and cationic drugs # Organism: Lactococcus lactis # 1 105 12 116 117 104 64.0 4e-23 MTWIYLVVAGILEVVWATALKMSQGFSQLGASIVTVVGMVLSFVFLGLAVKHLPLSLAYP IWTGIGAVGSILVGVICFRDRLPAITWLFVALLVIGIVGIKVTSGK >gi|269838509|gb|ACXB01000002.1| GENE 6 9976 - 10731 736 251 aa, chain - ## HITS:1 COG:BH0408 KEGG:ns NR:ns ## COG: BH0408 COG0789 # Protein_GI_number: 15612971 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus halodurans # 4 233 5 230 255 118 34.0 1e-26 MYSIQDLAKLAGISSRTLRYYDQIGLLVPARRTESGTRWYAKAQVDDLQRILFFKTLGVS LATIREIMAQPLAAQIAALEAQRVRIAEKQRRLQDLDVAIASSIKMLRGVGKMSDSEKFN SLKAQRLAENESQFGQEIRQKYGEETVEVANRHYLALSEAQLQRVDELEKELGTLLREAL TQHSDATKAAIFTAHQEWLKIMVGKQYSLAYHQNLAQMYQADERFQKHYDELAGQKGAGQ LLSEVILAKLR >gi|269838509|gb|ACXB01000002.1| GENE 7 10797 - 12440 1549 547 aa, chain - ## HITS:1 COG:no KEGG:LVIS_2143 NR:ns ## KEGG: LVIS_2143 # Name: not_defined # Def: arylsulfate sulfotransferase # Organism: L.brevis # Pathway: not_defined # 34 547 48 566 567 472 54.0 1e-131 MKKIRGWLIAAALMVALVAVAGWEYTAHSKTDLLSEEQIIQNLGTKLVTENSTTALTKKY AKIVKDGNYDLKNPYIKVNPYKTSPLTALVYFKTPKKAQVSYTIEGKSDKTSITNSVKGY QTKHQLPIVGLYADYENTVKITVKYQSGKKETKTIKIKTGKLPKYLDQNDVKVTKNDKSK MQIGDNELTLVDRTAKQVYAMDADGQIRWYSTNWNQHMFEQLKNGHVMVLNKSSENGKYN LLTETDYLGRIYRQYSFDGTLGGNLSHEVTVIHHDIAELPNGNLLLTVSDGSKYTEDTVV ELNRKTGKIVRVLDFKQILPASMYQDSKQKASDGNIGTDWLHINALDYNSKTGKLLVSAR NQDLVMQLDYATGKIEWIFSGKDKNSWPAKYRDKVLSPTGNTKVTGGQHGVYLLSQKGNQ ETIMLYDNNIAVQNGDQKTSGKYSAATVYQIDQQKKTVTQQWSYGKSLGQANFTPIIGYA QRLANGNTLINFGYKNDGKESNVIEVDADGNQVFNATLSNNPADKTYAYRAYRIQFYPEN YHFDVTK >gi|269838509|gb|ACXB01000002.1| GENE 8 12770 - 13831 914 353 aa, chain - ## HITS:1 COG:BH2080 KEGG:ns NR:ns ## COG: BH2080 COG1404 # Protein_GI_number: 15614643 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Subtilisin-like serine proteases # Organism: Bacillus halodurans # 67 350 777 1051 1052 77 29.0 5e-14 MKRGNRSNLQVNAELLKDRKVRQRWLLASAVALSMLGAGTVVNMENASAATVGNNSTTTA ISQSSKVTSATALAAVSTSKAANKESAKNTEADTDVAAPVVYQPYAGDRTITGTGTPGNT IIVRDDLKNEIGRSVVDQDGNYSVEIKAEYELFVGETISVVQVDANGNESSPVNMKIAER VPAPILEQPYEGDRTVTGRGVPGYTVNIYDDLKNKIGSGKVDAYGTFRADIWFGYNLYQG ETITAVQQDLQGNESSPVKIKVKTKEDTVPKPYVNQPYVGDRTIEGIGEVGCTVEITNGH GDYFGSDIVDGNNRFSVTIPAEYELYEGEQIKAVQINANGDKSEETTITVLTR >gi|269838509|gb|ACXB01000002.1| GENE 9 14066 - 14536 555 156 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0031 NR:ns ## KEGG: PEPE_0031 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 3 156 2 155 155 175 71.0 4e-43 MKKKKWTIVGVIIAVLVIIGGGVYWNMSHAVAKKVPGNTYIYQGLSKDKSVYLTFAESGD HVVVSSNKADAAKAKQSTSSFDQQYKAQEKSATWSYKAEGGTLTLAEETKDGQVSQWQYN HILATNKKFTARSFTYQIAKAGQGQVKRKVVFEKVS >gi|269838509|gb|ACXB01000002.1| GENE 10 14561 - 15805 1657 414 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0030 NR:ns ## KEGG: PEPE_0030 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 414 1 429 429 208 55.0 3e-52 MNKKRVAGAALASALLFAPLTLQSATALADSFYTSQTNAERADITNWVANTSQEISNNLS SQHIDVNNLHGDQYVIQWGDTLSGISNATGISVAKLAYDNRIQNIDLIYAGDVLVLNRDG EVPSDWSYEGDGNYVAKTKVTINNFTDNSDHSVNIDVSPVSNKHIDNSDNSVKNEYESPK DPQSDADDKSASASSDNAAKESSEDADQLDETDFSDAIQDEIKDKLNLDDDQLTVDFTGK DADDESDDTDSADEDVDSDTDTDSDTDTDTLYDDDQSVSTGSDQLTEKNAKKLADKIVKQ LKEDDKDKDVTDADEIELTITADDDDFTFNLSLTSDDDSDSDDTADSDEDSSDADSESSD DEDTASSEDEDRNADEDADTDRDEDSDSQDNESDDEDGDQAVDTNADVEDDDVE >gi|269838509|gb|ACXB01000002.1| GENE 11 15987 - 17405 1537 472 aa, chain - ## HITS:1 COG:L94890 KEGG:ns NR:ns ## COG: L94890 COG0531 # Protein_GI_number: 15674017 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Lactococcus lactis # 2 464 4 479 490 333 41.0 3e-91 MENKNGIGRLGLTALIVSSCIGTGIFGITNTVAAAAAPGPALLSWVFVGIGFLLLVLSLN NLSEKRPDLEAGIFSYAGAGFGPLGEFISGWAYWLSAWLGNVAFATMLMSAIGTFIPTFK GGQNMPSIILAIIFCWALTLLVNRGVESASFVNTIGTFFKVIPLFLFIIITIIFFKGHMF TTDFWGNVANNFSKGTVTGSVFDQLKGTLSTLIWVFIGVEGASVMGHRAKTRSQAQQATI IGFIMLLAIYVMISIIPYGTLTRAQLASASQPALGNDLELIVGHWGAMIINVGLIISTVI SWLSWTMLPAETTMLIAKDKVMPSLWGRLNEKNAPTASLYITAILQTIFLFSLLFTSEAY NFAYSLASAAILFSYLFVGLYQMKYSHKHQEWGQFTIGLLSALFMLACMFLSGWQQMLLV SISFIPGFIIYYQAVREDHRELGGQEKAVMGLILLLSVVAIYLVANGTIVVA >gi|269838509|gb|ACXB01000002.1| GENE 12 17505 - 18731 971 408 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149020061|ref|ZP_01835035.1| 50S ribosomal protein L33 [Streptococcus pneumoniae SP23-BS72] # 5 407 6 409 409 378 48 1e-103 MTQAIHVTSEIGKLKTVMLHRPGREIENITPDYMERLLFDDIPYLPIAQEEHDFFAKTLR DQGIEVLYFSKLAAEALADEGVRHEFLERMIAESGYVAGATHDGLMEYLSAMDPQTMVDR IIEGVRASDINIAQPDLQSVSENTDWPFLMDPMPNAYFTRDPQASIGEGISINKMTFAAR KRESLITEYIIKYHPRFAGKVEVWRDRNHETHIEGGDELVLSDHVLAIGVSQRTTADAIE DITRQLFKDSNYDTVIAIGIPHNHAMMHLDTVFTMINHDQFTVHPAILDGDGHVDNWVLH PDQNGGITMEHHTDIKEVLKKALNKSEIDLIPTGNGDPIVAPREQWNDGSNTLAIAPGEV VTYDRNYVSNDLLRKHGILVHEVRSSELSRGRGGPRCMSCPIVREDVK >gi|269838509|gb|ACXB01000002.1| GENE 13 18784 - 19713 918 309 aa, chain - ## HITS:1 COG:SA1013 KEGG:ns NR:ns ## COG: SA1013 COG0549 # Protein_GI_number: 15926753 # Func_class: E Amino acid transport and metabolism # Function: Carbamate kinase # Organism: Staphylococcus aureus N315 # 1 309 1 310 310 392 63.0 1e-109 MTKMVVALGGNALGKSPEEQLKLVKNTASSLIGLMNGDNQVVISHGNGPQVGQINLGMNY AAEHGKTAAFPFPECGAMSQGYIGYHLQQSLQNEIHHRGMQKNVVTAITQIAVDKDDPAF EKPTKPVGDFYSKEQADQIASEKGYTFVEDAGRGYRQVVASPLPKKIIELNSIKTLIESG DLVIAGGGGGVPVIETDEGLKGVPAVIDKDRSSALLADNIDADQLIILTAVDYVYVNYNQ PDEKALTSLSVAEAQQYMDDDQFAAGSMLPKIQACLSFVKGHPERKAIITSLSGLNDALA GKLGTVIHE >gi|269838509|gb|ACXB01000002.1| GENE 14 19726 - 20727 1135 333 aa, chain - ## HITS:1 COG:SA1012 KEGG:ns NR:ns ## COG: SA1012 COG0078 # Protein_GI_number: 15926752 # Func_class: E Amino acid transport and metabolism # Function: Ornithine carbamoyltransferase # Organism: Staphylococcus aureus N315 # 4 333 3 332 333 512 73.0 1e-145 MAFNLRNRSFLTLADFNTREMEYMLNLAEDLKKAKYAGTEGKRLAGKNIALIFEKSSTRT RCAFEVGAKDEGAHVTYLGPSGSHIGYKESVKDTARVLGGMFDGIEYRGFSQRSAETLAE YSGVPVWNGLTDEDHPTQVLADFLTAKEVLKKEYKDIKFAFVGDGQDNVSNALMLGAAVM GMEYHVVTPKELEPTKEVLDQANEIAAKTGAKIVVTNDINSGVKGMDVIYTDVWVSMGEP DEMWQKRIDLLKPYQVNKAVMDATENPNAIFEHCLPAFHNTDTEVGKKIQEKFGLSEMEV TDEVFESDHSVVFQEAENRMHTIKAIMVATLGD >gi|269838509|gb|ACXB01000002.1| GENE 15 20582 - 20854 166 90 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFLPASRLPSVPAYFAFLRSSAKLSMYSISRVLKSARVKKLRLRKLNAIENILLKVTKYL YYTYNDSKRFHDTLGFNLKFHEIVLIRVLT >gi|269838509|gb|ACXB01000002.1| GENE 16 21040 - 21888 906 282 aa, chain + ## HITS:1 COG:no KEGG:PEPE_1632 NR:ns ## KEGG: PEPE_1632 # Name: not_defined # Def: signal transduction protein # Organism: P.pentosaceus # Pathway: Two-component system [PATH:ppe02020] # 1 277 1 277 281 327 59.0 4e-88 MNFYLFENDSRHTTTIRDLIEADFNNNLVGIGVSPAQAYDDLLQLRVDIMIISSNDPEVG IQLIKRLEQVQIKPHYIMISSAEDVATKEAAYHAGIDFFLEHPVSPVEFKHVTRLVASYC QQISKLSEIYNITSQVVTPFNRPQSEHRLQMDRVNAILRFLGIASETGNKEILKIIRIMV DQNISFSSIDFQRDLGLDEHEKKIVYQRIRRALRVGITNLAGMCNEYSENEILLEYANAL FEYQNVYIEIQKMRHEDVPNGQISLQHFFDGLLQESHGKLSI >gi|269838509|gb|ACXB01000002.1| GENE 17 22129 - 22677 550 182 aa, chain - ## HITS:1 COG:mlr0414 KEGG:ns NR:ns ## COG: mlr0414 COG0431 # Protein_GI_number: 13470646 # Func_class: R General function prediction only # Function: Predicted flavoprotein # Organism: Mesorhizobium loti # 4 179 5 181 192 140 43.0 1e-33 MTLKIGIMVGSLRKGSFNRLVAQTFEKLLPHEVEPVWIEVGDLPLYNEDLDTDNPPMAWQ NLRRAVQSVDGVMFFTPEYNRSVPAALKNAIDVGSRPMGQNVWDGKPALVVTVSPGGIGG FGANHHLRQSLTFVNMPVLQQPEAYIGNITQHMDGDQIDEATQKFFKQIVGAYLTFLQRF TN >gi|269838509|gb|ACXB01000002.1| GENE 18 23042 - 24226 968 394 aa, chain - ## HITS:1 COG:BH1812 KEGG:ns NR:ns ## COG: BH1812 COG4552 # Protein_GI_number: 15614375 # Func_class: R General function prediction only # Function: Predicted acetyltransferase involved in intracellular survival and related acetyltransferases # Organism: Bacillus halodurans # 6 394 6 386 386 154 28.0 4e-37 MDKLERLTKTDLNDFYQLYLYAFTNPDSAERRAFFDHRYQHSEKYGIKYDGRLGSGMLSI PFQVNFHGVKYKMNGIGDVMSYPEYGGHGAITKLMRQAFQDMLANKVALSYLAPFSYKFY RRFGYEEVFDQTIYRVKNTDLPRIRVDSQEGSMERLSLKDAIPYIKELYNNNPDSHNAGL VRADWWWDYLVLKHPHWQVGVYFDDLHSAAGYVIYEGINTTFYIQEIMYTNWESYQYLAR FICQHESMYFNFEYVSGDPVGRPDILQEPDTLNVEIKPYMMARIINLATFVQDYPFLGKV KSIRLAVTDQMIPENNGIWRLMVNSNGTSFEKISDNETNMADIRLSIQELTKAFLGYRSL GHLNRVGAIRGSYAAIAGLDNVLRKESPMLWDYF >gi|269838509|gb|ACXB01000002.1| GENE 19 24248 - 24418 238 56 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVKMLIKYGAAGAFLIMASAIILTKLPLSSWTVDRAMLAISLLIFLGLGVALKKHA >gi|269838509|gb|ACXB01000002.1| GENE 20 24421 - 25656 1148 411 aa, chain - ## HITS:1 COG:BS_licC KEGG:ns NR:ns ## COG: BS_licC COG1455 # Protein_GI_number: 16080909 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Bacillus subtilis # 1 407 1 433 452 253 35.0 6e-67 MNNFMNWVQSSLMPPLAKAGNNKYLVSIRNGLVLTLPAVISGSIFLIIANIPIPAWTNFM KPYMGAMGVAVNGSFGIISLLATIGIGYELAKALDLDAINGAGLSTMAFIVTSFNSKLTL DTDNFASSGLFTAIVCSFISVSILRLFVKKDWIIKLPKGVPAAVSQSFASLTPAFLILLF FWGLRVPLHFDINHFIQSIFHPLLFAMNSLPGIMFYTLLVSILWVAGIHGDMTLQGISDP IFLQFLAANGVAYAHHQTIPYITSLGFSSLFVNVGGTGATIMLVFWMLSSKSKAYRELGK VAFPSALFEINEPVIFGFPVVMNPITLIPFIVIPQVLTITTYLLMAVHLIRPAVMMVPWT MPPIIGPLMATGWDWRAGVWSAIELVIAGVLYYPFFKVAEKQMVQQELKEG >gi|269838509|gb|ACXB01000002.1| GENE 21 25951 - 26517 306 188 aa, chain - ## HITS:1 COG:L10283 KEGG:ns NR:ns ## COG: L10283 COG1396 # Protein_GI_number: 15671987 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Lactococcus lactis # 3 187 2 184 185 78 30.0 7e-15 MSIGPALQKVRQDRHLTQAEVASQLYVTRQTISRWEQGKTIPNIYALKDLAELYGVSIDE LTNTSLLNPVQEEGDPMKQVNWMALFGILWFNVLFTAGAVVAVIGTLVGLWVTMVAFIGA PLLLFVEWLAVMAYHLPWPESLTWYEVPLSLIFCGIGISMWPMAKNTTFYLANFFKKYVR YNLKAIYR >gi|269838509|gb|ACXB01000002.1| GENE 22 26904 - 27581 245 225 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 22 201 20 199 223 99 35 2e-19 MAAIEMNGINQIYGKGIAEVHVLHDIDFKAEAGTLSLIIGPSGSGKSTFLTIAGGLRTPT SGKVKVNGHDYQDSSRKALEKLRLNEIGFVLQNYHLLPFLTVKDQFKLVDKVKKDHNLSQ AELNDLLTQLGVEDLVDKYPTELSGGQQQRVAIARALYPDPSIILADEPTAALDSSRVKE VGKMFARLAHEHNKAVVIVTHDMRLKDYADQMFKINDGVLSAETL >gi|269838509|gb|ACXB01000002.1| GENE 23 27586 - 28644 921 352 aa, chain - ## HITS:1 COG:L130944 KEGG:ns NR:ns ## COG: L130944 COG0577 # Protein_GI_number: 15674237 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Lactococcus lactis # 1 351 2 357 357 255 40.0 8e-68 MFLALKEIKREKLRYSLIIGMIVLISYLIFILTSLALGLAHQNTDAINSWKINSVVLNQD ANVNLSQSLITDQQVKDQKLTKNDALIGQISVVAKEGKHEKISSSFVGIQNDQFIAKQLK LTSGHKIKHDHEVVVDDKFEQSGYKIGDKLKLNDADQTFKIVGFTHNAKLNIAPVIYGTL DDWRDLKRAMPQTKASAIVSKTNDLKVKKPLKTYTKKAFIQKLPGYSAQNMTFALMIGFL MAISLIVIAIFLYILTIQKLPNYAVLRAQGIPSRVIAWSTIAQSLVLVVSGIIIGTLLTI ATAAVLPPAVPMAFDVPMLSAVGVGLVITALLGALVPIRSVIKLDPVSVIGG >gi|269838509|gb|ACXB01000002.1| GENE 24 28647 - 29150 460 167 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0017 NR:ns ## KEGG: PEPE_0017 # Name: not_defined # Def: transcriptional regulator # Organism: P.pentosaceus # Pathway: not_defined # 1 167 1 167 167 196 58.0 4e-49 MPSETLVKLKPTKKAAIETALLSEFSRYPVAEAQVARIVKDAGISRGAFYNYFADLIDAY RYIYQVAMRDIHQSLHVPTARGPALVTTVRDFVENAHSSKYYELLQMHFRHNEAYVAHWI APVHPGGERQWAQQTLVHDTLRGAIVEPETAEARLAQLTKILKILEE >gi|269838509|gb|ACXB01000002.1| GENE 25 29226 - 30716 872 496 aa, chain - ## HITS:1 COG:CAC0528 KEGG:ns NR:ns ## COG: CAC0528 COG0488 # Protein_GI_number: 15893818 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Clostridium acetobutylicum # 1 492 1 492 492 383 39.0 1e-106 MGIIQIKNLSYSYDQQVSPLFEKVNLEIDARWKLGLIGRNGRGKTTLLKILRGQVPYQGQ VNTDLQFNYFPAKVLNPQAPLEKVLMEITQRDYSNFWEVEREMERIGLPNKLLARPYDEL SPGQRTKAQLAAMFANAGAFQLIDEPTNHLDDEGRQRLADYLKRKQGFIVVSHDRDFLNQ VIDHVIAIDRAQITSLHGNYTTWATERQREDERERRTKETLQKEVKQLSKAAHQKQNWSM ATEREKAGAPDKGFVGHKAAKIMKRATTIQARVEAKVADKQRLLKNIEIEAELQLNYNPP RLPVNASLLTVDQLVVSRGEGPLNQPISFTLKAEERIVLQGPNGVGKSTLIAAILGNPEL QTTGSVNLRNGLKVSYLPQAFDALSGDLASFAQAKGVELQDLLATLRKLGFEREMFTQRI EQMSMGQKRKVALARALCEPAHLYIWDEPLNYLDVITREQIQQLILRVRPPMLLIDHDQE FVRQVNTKLLEVKTRF >gi|269838509|gb|ACXB01000002.1| GENE 26 31070 - 31801 716 243 aa, chain - ## HITS:1 COG:ECs4801 KEGG:ns NR:ns ## COG: ECs4801 COG0730 # Protein_GI_number: 15834055 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Escherichia coli O157:H7 # 2 241 18 251 291 71 27.0 1e-12 MIILGVLLIAWLGALVRAVFGFGEALVSMPLLALLGYDLKTSTALIGAVGLLVALPATIR EWHRIDFRAVRRLVTGSLIGVPLGILLVKTLPASVVLHGLGLFLIVYGGYSLWRSHSGRV GKPHLVAKGYDYLAGMVSGALGSAYNSHGVPVAVYGMLKQWPAAHLRAILQAHFLCVGVL VVISHVAAGFWSLEAVKVLLMVIPGLVLTVPLGNWIVDRMAPARAIKFVYGALIIFGLLL MLK >gi|269838509|gb|ACXB01000002.1| GENE 27 32059 - 32427 404 122 aa, chain + ## HITS:1 COG:no KEGG:PEPE_0014 NR:ns ## KEGG: PEPE_0014 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 122 1 122 122 119 64.0 3e-26 MHTFTIVLIILIGLEHVGIMGLELLGSDRLIAKSFNLPLAEVERPHLRTALANQGLYNGF VALSLFLIIFIPGGTLLRGMAIGLLAGIFIIAAYGALTVAKRILWIQGAPALITMVLAMF FL >gi|269838509|gb|ACXB01000002.1| GENE 28 32701 - 33897 1291 398 aa, chain - ## HITS:1 COG:BS_yttB KEGG:ns NR:ns ## COG: BS_yttB COG0477 # Protein_GI_number: 16080087 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus subtilis # 6 357 5 354 397 218 36.0 1e-56 MRELKLKWLLLGVLIDSIAMSSVWPLTTIYMNQELGHSLVAAGVVLFLNSVASILGSFVA GKLYDKYDSYYLILGGIVFTWISFFTLIFFNGWPTYPIFLVLIGFGTGWIVALNNSMGTS IKSKDGRYVFNMLYFVQNLGVMLGTAIVGILFKHSVAPLFTIATVMFTVFFVVAFFTYRI PKEDQSVQSVQQTQDIQSKMPKVNFTIIMSFFVSLVIMWIFYQQWNSTVSIYMLKLHIPL RLYSFLWTVNGLFILIVQGLLSSRGGRLLKDPYHQVYLGIAFFMASFGILAVAHQYYHFV IAMIVLTVGEAIAFPSIPAIVNSLSPYDQKGKYQGLASAFPSAGRAMGPLVGSMIIESTS FVFLYSLGLFTILVVLVVIALIIESTKRKATLYDNNQE >gi|269838509|gb|ACXB01000002.1| GENE 29 33990 - 35387 1598 465 aa, chain - ## HITS:1 COG:lin0047 KEGG:ns NR:ns ## COG: lin0047 COG0305 # Protein_GI_number: 16799126 # Func_class: L Replication, recombination and repair # Function: Replicative DNA helicase # Organism: Listeria innocua # 1 456 1 441 450 525 61.0 1e-149 MDNGILENQTPPQNIEAEKAVLGAVFLNSDALIDAMEFVTADDFYKHAHQVIFKTMVELN DADEAIDALTVNNALEEHHQLEDAGGITYIAELAGSVPTAANVGYYAKIVQEKALLRKLI KTATSIATMGYTQENDVSEILDEAEREIMDVAENRNQTGFKPITDVLTSSMEEIDRLYQN DDEITGLPTGFKELDKITTGLHADELIILAARPAVGKTAFALNIAQNVGTKTDKAVAIFS LEMGAEQLVNRMLCAEGSIDANHLRTGQLNEEEWQNLVVAMGSLAKTNIYIDDTPGIKMS EIRAKCRRLAKEQGNLGLVVVDYLQLIEGSGENRQQEVSAISRQLKKLAKELGIPVIALS QLSRGVEQRQDKRPVMSDIRESGSIEQDADIVAFLYREDYYERDDGTNQQDQDQDPRDEE DQNVGPVEVIIEKNRSGARGTVNLLFIKSYNKFSSLAYMPEAGAH >gi|269838509|gb|ACXB01000002.1| GENE 30 35437 - 35889 648 150 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116491829|ref|YP_803564.1| 50S ribosomal protein L9P [Pediococcus pentosaceus ATCC 25745] # 1 150 1 150 150 254 86 4e-66 MKVIFMEDVKGKGKRGEVKNVPDGYAQNFLIKNGKAKAATKAAMSELKGQKKAEEKHEAE VLAEAQKLKQVLEADATVVEIKAKAGKDGRLFGSIPSKQIATALEQQFDIKIDKRKIELN EPIRSMGYTNVPVKLHQQVTAKIRVHVSEK >gi|269838509|gb|ACXB01000002.1| GENE 31 35895 - 37892 819 665 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|162447066|ref|YP_001620198.1| bipartite protein: signaling protein and ribosomal protein L9 [Acholeplasma laidlawii PG-8A] # 33 659 41 660 818 320 32 1e-107 MKLVDRLPAFIRNPRVGIVAVVITVLSLIGLGLAFYINPVIGVIMLGLVIVTGVFSVRTL NLISDETSKYIAELSFRVDQAEEDAMLSMPIGILIYSDQKRVEWVNPKLQHYFGDQKVLG HLLTEVDEDLAEVIDRHQDQEGLNRVEWKDRTFDVLVQKDERVAYFVDVTNYAQMENRFE NRQVVIGQIFIDNYDEITQAMTDSDVSNLNNFVTNQISSWAQSFGIYLRRVDDDHFFVIM YNETLQKVEEDSFKLLDTIREATSKQNSPVTLSIGIAYGDDNLNKLADVSQSNLDLALGR GGDQVVVKAEDEPARFYGGKTNPMEKRTRVRARMIGQAIQELMNQADQVFVMGHTRTDLD SLGSALGIRRIAQMNKKEAWIVLDQEGVHSDVKRLIDKLDEHEDIRDSIIDADQALELAN SQSLLVMVDHSKPSMTTSKELFEKLSDRTIIIDHHRRGTEFPENPVLVYIEPYASSTGEL ITEMFEYQSHDGDPIQPIEATAILAGIEVDTKSFTERTGTRTFDAASYLRSVGADEDLIR YLLKENVESYMQRNHLIDTVQFVDVKYAICVGEEDREYDPVIAAQAADSLLNISGVEASF VITRRSDDVVGISARSAGTENVQIIMEELGGGGHLAMAATQMKDVTVADAKDQLIALLQK DEEEE >gi|269838509|gb|ACXB01000002.1| GENE 32 38105 - 38341 387 78 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116491827|ref|YP_803562.1| SSU ribosomal protein S18P [Pediococcus pentosaceus ATCC 25745] # 1 78 1 78 78 153 98 8e-36 MAYQKRGGRRRRKVDYIAANHIEYIDYKDTELLKRFISERGKILPRRVSGTSAKNQRRLT IAIKRARIMGLLPFVAED >gi|269838509|gb|ACXB01000002.1| GENE 33 38371 - 38892 584 173 aa, chain - ## HITS:1 COG:BH4049 KEGG:ns NR:ns ## COG: BH4049 COG0629 # Protein_GI_number: 15616611 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-binding protein # Organism: Bacillus halodurans # 1 173 1 168 168 169 56.0 2e-42 MINRAVLVGRLTRDPELRYTSSGAAVVSFTVAVNRQFTNSQGEREADFINCVMWRKAAEN FANFTRKGSLVGIDGRIQTRSYENQQGQRVYVTEVVADNFSLLESRSASERRQENEGFNN GQSAPSQSSAGNPFDSGQANNNGAASQPNNSNPNDPFANGGQSIDISDDDLPF >gi|269838509|gb|ACXB01000002.1| GENE 34 38929 - 39216 328 95 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116619043|ref|YP_819414.1| ribosomal protein S6 [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] # 1 95 1 95 98 130 65 6e-29 MEKNYEITYIIAPNLDDAAKTALVERFDKILTDNGAEIVDSKDWSKRRFAYEIGGFNEGI YHVVNIKASDDKALNEFDRLSKIADGILRHMIVVR >gi|269838509|gb|ACXB01000002.1| GENE 35 39402 - 41933 2262 843 aa, chain - ## HITS:1 COG:SP1219 KEGG:ns NR:ns ## COG: SP1219 COG0188 # Protein_GI_number: 15901081 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit # Organism: Streptococcus pneumoniae TIGR4 # 9 823 6 822 822 1072 66.0 0 MPEDMSGRITDVNLSNQMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTP EKPYKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAA MRYTEARMSKITLEMLRDINKNTVDFQENYDGTEREPSVLPSRFPNLLVNGATGIAVGMT TNIPPHNLSEVIAAIHILMNNEDATTADLMEALPGPDFPTGGIVMGKSGIRKAYETGRGT IILRAKVDIETEKNGRERIVATELPYMVNKAKLIERIAELARDKRIEGITDVNDESDRDG LRVVIDVRRDVSASVVLNNLYKMTLMQTTFGFNMLAIVNGAPKVLSLKQILQYYLQHQEE VVRRRTEFDLKKAEARAHILEGLRIALDHIDEIIAIIRGSQTAEVAKDQLMNNYSLSSKQ AQAILDMRLVRLTGLEREKVEDEYRKVMAAIADYRDILAHTERIHEIIYNELLEIQEKFG DERRTELMVGEVLSLEDEDLIEEEDVMVTLTHNGYIKRMPTSEFKTQNRGGRGIQGMGVH EDDFIEHLVSTSTHDVLLFFTNAGKVYRMKGYEIPEYSRTAKGIPVINLLGIDSGESIQA VINIGRGNGDEDNEHRYLFFTTLQGVAKRTPVAEFMNIRSNGLKAINLKDGDEVINVVIT DGHQNIIIGTHNGYAISFKEGEVRSMGRSATGVRGIRLRENDYVVGSAVLAPESKVMVIT EKGYGKQTPAEEYPIKGRGGKGIKTANITEKNGPLAGLVTVEGNEDVMLITDRGVMIRFN VDNVSTTGRSTLGVHVIKTDENSKVATMAIVEEEKDDESEDSADTSTATNEAPSVSTETQ SEE >gi|269838509|gb|ACXB01000002.1| GENE 36 41980 - 43926 2041 648 aa, chain - ## HITS:1 COG:BS_gyrB KEGG:ns NR:ns ## COG: BS_gyrB COG0187 # Protein_GI_number: 16077074 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Bacillus subtilis # 15 648 8 638 638 837 67.0 0 MADEKETKAELAKEYDASQIQVLEGLEAVRKRPGMYIGSTSSQGLHHLVWEIIDNGIDEA LAGFANKIDVVVEKDNSITVSDNGRGIPVDIQKKTGKPALETVYTVLHAGGKFGGGGYKV SGGLHGVGASVVNALSTELDARVMRDGKIYYIDFEQGKVKTPMKVLGPTKNPDDHGTIVH FVPDPDIFQETTVFDINILRTRIRELAFLNKGLRITLRDMRPEKPTEDDFLYEGGIRHYV EYLNKGKEVIFPEPIYVEGITKGITVEVAMQYIEGYQSKLLTFTNNIHTYEGGTHEEGFK RALTRVINDYAKNNGILKENDDKLSGDDVREGLTAVVSVKHPDPQFEGQTKTKLGNSDAR TAVNEVFAETFSKFLLENPKVARQIVDKGTLAAKARIAAKRAREVTRKKSGLELNNLPGK LADNTSKDPEISELFIVEGDSAGGSAKAGRSRLTQAILPIRGKILNVEKATLDRVLANEE IRSLFTALGTGFGEDFDVTKANYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPMIDAGYV YIAQPPLYQVRQGKMIKYIDSDEELEAVLGQLSPSPKPVIQRYKGLGEMDAEQLWETTMN PENRRLLRVSADDLDAANGDFEMLMGDKVEPRRKFIEDNAVFVENLDI >gi|269838509|gb|ACXB01000002.1| GENE 37 43930 - 45054 988 374 aa, chain - ## HITS:1 COG:lin0005 KEGG:ns NR:ns ## COG: lin0005 COG1195 # Protein_GI_number: 16799084 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair ATPase (RecF pathway) # Organism: Listeria innocua # 1 371 1 370 370 382 53.0 1e-106 MYLKTLELHNFRNYADLSVEFGSGINVLLGENAQGKTNLLESIYFLALTRSHRTSNDRDL IGWKAKEARVLGTIQKEHTQTPVEIDISSKGKNAKVNHIEQGRLSQYVGQLNVILFAPED LSIVKGSPAVRRRFIDMEFGQMSSKYLYNSAQYRSVLKQRNQYLKQLQIDPKGDQVYLDV LSDQLAAYGAEIIFQRIQFLKKLEEWSQAVHEEISQGLEKLTFQYVSPLKKDETTSTETI YTALQELLKKHRQRELQQGKTLVGPHLDDVRFIVNGKNVSTFGSQGQQRTTALSVKLAEI DLMKEETGEYPVLLLDDVLSELDDSRQTHLLTAIQNKVQTFITTTSLSGVAQQLINEPHV FNIDHGVLTQNEEE >gi|269838509|gb|ACXB01000002.1| GENE 38 45055 - 45282 301 75 aa, chain - ## HITS:1 COG:BS_yaaA KEGG:ns NR:ns ## COG: BS_yaaA COG2501 # Protein_GI_number: 16077071 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 1 69 1 69 71 85 57.0 2e-17 MQKEIEINTPFITLGQLLKEEGIIGTGGQAKWYLREHTVLVNEEPDDRRGRKLYANDVIE VPDEGSFKITTKSGK >gi|269838509|gb|ACXB01000002.1| GENE 39 45879 - 47018 1248 379 aa, chain - ## HITS:1 COG:BS_dnaN KEGG:ns NR:ns ## COG: BS_dnaN COG0592 # Protein_GI_number: 16077070 # Func_class: L Replication, recombination and repair # Function: DNA polymerase sliding clamp subunit (PCNA homolog) # Organism: Bacillus subtilis # 1 379 1 378 378 310 46.0 3e-84 MKFTIARNTFIKKLNAVQRAISSKTTIPILTGLKIKAEADQLVLTGSNTDISIETTISVN DPDAELDIEQTGDIVLTARFFSDIVKKLPDNKMLVEVSDGFQTTITSGASEFKINGLDAN NFPHLPEVDSQTTITLQADVFSEMINETVIAVSNQESRPILTGIHFTIENNKLTAVATDS HRLSQRIINLPEAVKMPEDIIIPGKSLLELSRMLDEEIDTITLQISENQALFTFDETLFY TRLLEGLYPDTSRLIPKESTTAMEFEAPELLASIERASLLSHAGRNNVVKLTINAAAKKA IITGDSPEVGNVEEVVVTKDIQGEDLEISFNPDYLKDALRSFGHTAIKMEFTSPLRPFTL VPTEDQENFIQLITPVRTF >gi|269838509|gb|ACXB01000002.1| GENE 40 47194 - 48534 1299 446 aa, chain - ## HITS:1 COG:BH0001 KEGG:ns NR:ns ## COG: BH0001 COG0593 # Protein_GI_number: 15612564 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA replication initiation # Organism: Bacillus halodurans # 1 445 1 448 449 443 51.0 1e-124 MPNYIDLWNHIKNSFENDDSMSKASFGAWVDTAEPISLDNHVMKIKVLSNLHRDYWTKHL MEKFVEYAYQFTDQDITPEFVTEDEFKAQQAQKPQSTDKSSSFSTEDTQLNSRYTFDTFV IGSGNQMAHAAAMAVSDEPGVLYNPLFFYGGVGLGKTHLMHAIGHQLLENDPQTRVKYVT SEAFTNDFINSIQKNTTEEFHEKYRNVDLLLVDDVQFFADKEATQEEFFHTFEALYNAQK QIVLTSDRLPNEIPKLQERLVSRFKWGLSVDITPPDLETRIAILREKAQADNVEIPDETL DFIANRIDSNIRELEGAMARIQAYAQLQNAAITTDLAADALRSLNFGSNLSHVTIPIIQD KVAKYFHVSVADLKGKKRLKSIVIPRQIAMYLSRELTDNSLPKIGTEFGGKDHTTVIHSC DKIKAALETNSDLARQIDDLKSELKP >gi|269838509|gb|ACXB01000002.1| GENE 41 49053 - 49187 225 44 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|116493573|ref|YP_805308.1| 50S ribosomal protein L34P [Pediococcus pentosaceus ATCC 25745] # 1 44 1 44 44 91 100 5e-17 MKRTYQPKKRHRQRVHGFRKRMSTSNGRKVLARRRQKGRKVLSA >gi|269838509|gb|ACXB01000002.1| GENE 42 49291 - 49650 391 119 aa, chain + ## HITS:1 COG:L131443 KEGG:ns NR:ns ## COG: L131443 COG0594 # Protein_GI_number: 15672110 # Func_class: J Translation, ribosomal structure and biogenesis # Function: RNase P protein component # Organism: Lactococcus lactis # 1 117 3 117 117 108 48.0 3e-24 MRKSYRIKKEKEFQEVFETRNSFANKKFVVYVMDKPGQPHFRVGISVGKKIGNAVMRNYM KRRIRQSILEFKPLLRSDVDFLVIARPQASGLPMKEVKRQLEHVFKLAGLFASKQSEEE >gi|269838509|gb|ACXB01000002.1| GENE 43 49650 - 50489 808 279 aa, chain + ## HITS:1 COG:L131778 KEGG:ns NR:ns ## COG: L131778 COG0706 # Protein_GI_number: 15672111 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YidC # Organism: Lactococcus lactis # 23 275 21 268 269 251 53.0 1e-66 MKHLKRNLALLSVVALSFILTACSTAPITSHSTGFWDGVIVYNFSKFIIYLSKICGNNYG WGIIVFTVLIRIIILPLMIYQTKTSMKTAELQPKLKELQQKYSSRDVETQQKLREEQQKL YAEAGVNPMAGCLPLIIQLPVMYALYAAVSRTQVLKEGTFLWLQLNDKDPYYILPILAAF FTFLSTWLSMKAQPAGAQNGMTSAMTFGMPLIILITALNFPAAITLYWVVTNLFQVGQTL VIQNPFKIQKERQAKLQAEKAKRKAIEKAKRKAMKSKRK >gi|269838509|gb|ACXB01000002.1| GENE 44 50746 - 52140 1495 464 aa, chain + ## HITS:1 COG:lin2943 KEGG:ns NR:ns ## COG: lin2943 COG0486 # Protein_GI_number: 16802002 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Listeria innocua # 7 464 2 457 457 553 66.0 1e-157 MPSVSTEFDTIAAISTPPGEGGISIIRISGVNALKVASQIYRGKDLAKVASHTINYGHVV DPATDEEIDEVMVSVMRAPHTYTKEDVVEINCHGGIVATNRILQLILGLDARLAKPGEFT ERAFLNGRIDLSQAEAVMDLIRAKTDQSMKVALDQLDGNLSHLIKNLRQDILDVLAQVEV NIDYPEYDDVETMTTRLLKEKAIEVKAKVNQLLATAKQGKVLRDGLATAIIGHPNVGKSS ILNHLLHEDKAIVTDVAGTTRDVIEEYVNVQGVPLKLVDTAGIHETEDKVEKIGVDRSRK ALQQADLVILVLDSSVPLRDEDRQLLDQTANMQRIVVLNKTDLPTKINLNELQKYASEAE IIKSSAVAPLGTKDLEDRIAKLFFAGSIENSSNNVMVTNARHIGLLQQTVTALDSVLDGI EAGMPVDLVQIDMTRAWDLLGEITGDSYQDELLDQLFSQFCLGK >gi|269838509|gb|ACXB01000002.1| GENE 45 52156 - 54063 1609 635 aa, chain + ## HITS:1 COG:BS_gidA KEGG:ns NR:ns ## COG: BS_gidA COG0445 # Protein_GI_number: 16081153 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: NAD/FAD-utilizing enzyme apparently involved in cell division # Organism: Bacillus subtilis # 7 635 3 626 628 832 67.0 0 MLEVKQYDGRDYDVIVVGAGHAGSEAALAAARMGNKTLLMTINLDMVAFMPCNPSIGGPA KGIVVREIDALGGEMGRNIDKTYVQMRMLNTGKGPAVRALRAQADKHAYHAEMKKTIEAE PNLTLRQGIVDDLIVEDGVCKGVITNTGARYHAKSVVLTLGTAARGKIIIGELQYSSGPN NSQAALELTKNLTEKYHFELERFKTGTPPRVDGGTIHYAETEEQPGDEEPNHFSFQTPDS KYLELKNQLSCWLTYTNEKTHEIIRENLSRAPMFSGVIEGVGPRYCPSIEDKIVRFADKD RHQLFLEPEGRKTDEWYVQGLSTSMPEEVQQQILHSIKGLEDAEMMRPGYAIEYDVVAPY QLKNTLETKLIKNLYTAGQTNGTSGYEEAAGQGLIAGINAGRRALGQEPFTLKRSDAYIG VMIDDLVTKGTKEPYRLLTSRAEYRLILRHDNADLRLTEMGHDLGLVSEEEYAAFLQKKA DIQDELHRLEQIRIKPGQVKEFLESKGSHGLKDGVLAAEFLRRPEVTYADLLKFIPASEK QLDRRVVEQVEIEIKYAGYIKKAQERVDRLKKMEAKVIPDRIDYNAISGLATEGRQKLEK IRPTTIAQASRISGVTPADIAILSVYIQQGKIAKI >gi|269838509|gb|ACXB01000002.1| GENE 46 54577 - 55206 438 209 aa, chain + ## HITS:1 COG:CC3385 KEGG:ns NR:ns ## COG: CC3385 COG3022 # Protein_GI_number: 16127615 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Caulobacter vibrioides # 1 205 41 250 255 139 39.0 5e-33 MSLNELQQLWKCSDRLAAINYENTRRLDLLRNQTPAVLAYTGIQYQSLGADLMTSPQLNY LQDHLRILSGLYGILRPFDGIVPYRLEMQARLQIAGQQNLYDFWGAQIYHQLFKETEVVI NLASKEYARVIEPYLQADQQMVTCVFGELVNGKVRQKATKAKIARGEMVRFMAENEVQKV AQLKQFAQRGYQFCEELSSGRQLVFLSSN >gi|269838509|gb|ACXB01000002.1| GENE 47 55392 - 56132 594 246 aa, chain + ## HITS:1 COG:SPy1202 KEGG:ns NR:ns ## COG: SPy1202 COG2188 # Protein_GI_number: 15675167 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 8 234 16 236 241 110 33.0 3e-24 MPKTKFEKVAQSLVERIQQGIYSNMQRLPSEYQLADEYGVSRLTVRKAIERLVTAKILVK DPGKGTYIMSTNSSNKVESGRMGLQSFTEAAETYGKQSRTQVLDYQPLIQPDQRVEEKLN LRNNPQPEVDELVRRRFWDDDPMTIEDIVILHKYVANHQKNDFKHSLFQILAETVEIAYS NQEIEAIKVDEKLAKLLHVQEGDPILCVHSLTYTADGQPIFYDTSYYRADKYTFKTTLTR LEQGGK >gi|269838509|gb|ACXB01000002.1| GENE 48 56132 - 57457 1029 441 aa, chain + ## HITS:1 COG:CAC2723 KEGG:ns NR:ns ## COG: CAC2723 COG0624 # Protein_GI_number: 15895980 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Clostridium acetobutylicum # 16 436 13 465 465 217 30.0 3e-56 MVVNQEFKALIEAHYDEFLRDLAKVIEVQSVRGPAELHAPFGKGPRQVLTVAVKLADQYG FKTSIVNDAVAIAQWGPDTSDYIGIVGHLDVVAAGEGWQSDPFKLNIREDTLYGRGVLDN KGPIMAVLFGMHLLKERGFYPRKTLRIIFGSDEESGSADIPLYLKEQPAPEFGFTPDCKF PAVYGERGIVNYEIDTPIKLAALQQISTITGDQAKDHVPDQLTIEVQNQLIEVQGKRSPS NAPELGVNAIMLLAKAIKKRAELAPELVTYFDWLLDSFDQRYFGEGLGIDFQDEDSGKLM VTPYLLQKVEGGLKLSIAIRYPVTVTEEQVTAGLKKAILPGSELRVVRRIPGTMHDKNDP RIKQLSAVYTMVTGQDGTPVTTTGATYARAVPNTIAFGPSFPGQKGIAHKQDEWMTNHDL KLNMEIYMNAMVGLAKMEEKK >gi|269838509|gb|ACXB01000002.1| GENE 49 57454 - 58410 1029 318 aa, chain + ## HITS:1 COG:CC2359 KEGG:ns NR:ns ## COG: CC2359 COG1446 # Protein_GI_number: 16126598 # Func_class: E Amino acid transport and metabolism # Function: Asparaginase # Organism: Caulobacter vibrioides # 5 287 20 316 327 144 32.0 3e-34 MTNWATIATWRMAHDGVLKASEMLKENASAGDAVESLINVVEEYPYYKSVGYGGLPNEEG VVEMDAAFMDGDTLAQGAVGGIRHVLHAVSVARQLSHEHFNSFRVGEGATKYALVNGFEM RNMLTDRAKLRWQKRLKEIQEAQISPYDGHDTIGALTLAQSGSMAAATSTSGLFMKKAGR VGDSPLSGSGFYVDSEIGGAAATGLGEDIMKGCISYEIVRRMAEGETPQDACDHAVYPFV EKLKRRYGKAGEFSLVALNKNGEWGVATNVEFTFSVATATSAPQILIAHPAENQTTRIEP ITQEWLDAYEKRIKAPIK >gi|269838509|gb|ACXB01000002.1| GENE 50 58429 - 58953 519 174 aa, chain + ## HITS:1 COG:no KEGG:LSA1691 NR:ns ## KEGG: LSA1691 # Name: not_defined # Def: hypothetical protein # Organism: L.sakei # Pathway: not_defined # 1 174 2 175 175 219 64.0 3e-56 MKVIIILDQIQAGLGGKERADTPLGGKKVALGSAETTAKALAKVDGEVIGTFYCGTDYYR EHPELVQEKFTKMAAKMAADVVIIGPTYDYPEFSQMACELTAAFQKDTTIPALQATALEK NAAIIEQYKDHLLIVKMPKKGGTGLSVAIDHLVEGCVLAANREDLTAFKNQYCY >gi|269838509|gb|ACXB01000002.1| GENE 51 58982 - 60295 1136 437 aa, chain + ## HITS:1 COG:BS_licC KEGG:ns NR:ns ## COG: BS_licC COG1455 # Protein_GI_number: 16080909 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Bacillus subtilis # 5 423 8 434 452 312 38.0 1e-84 MQKKFEQVLMPLASKLGNNVVLKSLRDGFLIITPLIIVTSIFLLIGNFPIPGWESFWTRI LGEHWTEWFSAVSNSVFSFTGILSCMGIGYAYGKNRGLEAIHSAVVALVSFLILTPTSFT VGKTAVSAVQTMYVGPNGIFLGIFISIVSVEVYRFAVKHHWTIKMPEGVPPAVSQSFDAL IPSALVILLFFLIRIGFSISSFDTAYNFIYTLLQAPLKHVGNSLPSVLLYNFLASLLWVF GINGPTITNSVWSPIFFVLTQDNLKAFQNHLPLPHIYTQPFIDIFTTYGGGGSTLSLLIV MFAVCRSKRIRELGKLAILPGVFGINEPIIFGLPVVLNPIIAIPFIIVPVLNTFISGVVF TLGWVPRTNGVLLPWTTPPIISGWLATGSWTGSLLQLVEIILGIIIYYPFVKMLDHQYLK EEDIALGQDLDIDFDEV >gi|269838509|gb|ACXB01000002.1| GENE 52 60494 - 61072 655 192 aa, chain + ## HITS:1 COG:SPy1842 KEGG:ns NR:ns ## COG: SPy1842 COG0681 # Protein_GI_number: 15675668 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal peptidase I # Organism: Streptococcus pyogenes M1 GAS # 2 176 3 188 197 114 37.0 2e-25 MRFLRDWVLPIVVGLLIAFLVKTYLFQIVKVDGSSMQPNLQDSERVLVWKQAKIKRMSVI VFDAHGEDPAATQPVDYVKRVIGVPGDTISYKDGKLYVNDKEVPQKFIDEEQRTTGTGNW TLSSIANKYGWAKNPVKVPKDSYFVLGDHRSVSNDSRYWGFVKKSKVMGVVKVPFWSHDE KAKKNINDLAVE >gi|269838509|gb|ACXB01000002.1| GENE 53 61144 - 61542 281 132 aa, chain + ## HITS:1 COG:CAC1608 KEGG:ns NR:ns ## COG: CAC1608 COG0537 # Protein_GI_number: 15894886 # Func_class: F Nucleotide transport and metabolism; G Carbohydrate transport and metabolism; R General function prediction only # Function: Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases # Organism: Clostridium acetobutylicum # 6 111 5 112 122 108 49.0 2e-24 MKTDPNCVFCQKTEADYIVENELAASFLDFYPVSKGHTLIIPKRHVRQIWDVTAEERKAI WDLIEQNKAILDEKYHPDGYNVTINSGAAAGQSVFHCHIHLIPRYWSEDPQRKPVPAQYL IPNKRPQFKGMD >gi|269838509|gb|ACXB01000002.1| GENE 54 61904 - 63370 927 488 aa, chain + ## HITS:1 COG:lin2646 KEGG:ns NR:ns ## COG: lin2646 COG1502 # Protein_GI_number: 16801708 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes # Organism: Listeria innocua # 17 488 15 482 482 513 50.0 1e-145 MALQILKWIVDGILILNVAGALYTVFRQRRDIAATWAWLLVLCFLPLFGFVIYAFVGRKL PENKLFPLKSKTRLELDQIMEHQRKELKETTLTAADQVVKESAGMVQFFSRTDYAFLTRR NNVKIITDGHALFEDMFAEIKKAQKHIHVEFYTIYDDQIGNDLRKLLEQKAKEGVEVKVL WDSWGSMGTKRSFFKKLNELGGQAFPFLGTRSALTDFRLNFRDHRKIVVIDGKIGYVGGF NVGDQYLGRKEKFGYWRDTHLKIVGSGVYSLQSRFILDWNATDRAHPISEEFKPGSVYFP VAEVKGHTSLQIVSSGPDSDIEKIKMGYLKMINAAKKSIWIQSPYLIPDDSVLDALRLAA NSGIDVRIMVPCKPDHVFVYRATQYYAWQCAKWGIKVYYYNNGFLHAKTMVVDGKVSSVG SANLDFRSFKLNFEVNAFMYDENIAHQLEEIFLNDIENSSLQTVGIFNRQSRWLKFKQTF SRLLSPIL >gi|269838509|gb|ACXB01000002.1| GENE 55 63687 - 65066 1409 459 aa, chain + ## HITS:1 COG:NMB0536 KEGG:ns NR:ns ## COG: NMB0536 COG1757 # Protein_GI_number: 15676442 # Func_class: C Energy production and conversion # Function: Na+/H+ antiporter # Organism: Neisseria meningitidis MC58 # 8 453 14 458 459 268 36.0 2e-71 MQKVRTREASLVLIVMLAILGTGVIKWGLSPQTPVLLVLGLLTIWAKIRGFSWQAINDGI KSGIETGIIPIFIFILVGALISVWIAAGIIPTLMLVGFKMISVNWFIPSVFVVCALVGTA VGSAFTVMSTVGIAFFGMGMTMGINPALVAGAIISGAVFGDKCSPLSESTNLSAAVVDAD LFDHIRNLMWSTLPAFVGALILFAIFGAGDAQNADISKIQHTESVLQAHFATGWWVLIPI ILMFVCAWRRVPAVPTLFINIGVSVGLIWLEHPATSVQHLAKIIETGYVAHTGNLEVDQL LSRGGIASMMTTVSLIVVTLSLGGVLVHLGLINQVMEPIARVLNSDGKLILAVVLSAMGA NLLIGEQFLSVILPGKAFKATFKKAGLANVALSRALEDGGTVINYLVPWGVAATFAANTF HVATLDYLPFAFFSLLSPVFSILSGFTGIGLKRSKASSD >gi|269838509|gb|ACXB01000002.1| GENE 56 65063 - 66028 684 321 aa, chain - ## HITS:1 COG:no KEGG:PEPE_1837 NR:ns ## KEGG: PEPE_1837 # Name: not_defined # Def: lysophospholipase L1 related esterase # Organism: P.pentosaceus # Pathway: not_defined # 1 315 1 314 324 363 54.0 5e-99 MERLIPTSANGTIPNLYFIGRWVPKKFANRSVMYTTNLGAQVTFEVQNAASVILEWILPD LTIPQTVTIFVDDQPRLIELNEPCFELQLSSKSRHVVHLYFTGNTDQDEVWTSSAGLALA DVHPSAGGQMHAVKPAGPLVAWIGDSITAGCWVREKVPSRGYGADLNYAALVSRKLNWED YRVAYSAAGIIRYGTGGVPAAPRFINYVDYETPAPDFQPKFVFINLGTNDWQFDTSVFEM YFTAFMKEVQFKFNEAQIFVMIPLNQSHAKTIKAIAQTFNFTVIPTATWKYSTTDEVHPD VAGSQVLSRQLLDWLQIHGWV >gi|269838509|gb|ACXB01000002.1| GENE 57 66043 - 66609 418 188 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164512|ref|YP_001467500.1| 50S ribosomal protein L24 (BL23; 12 kDa DNA-binding protein; HPB12) [Campylobacter concisus 13826] # 7 183 4 179 185 165 44 2e-39 MENNFICTWARNASPLMQAYHANEWGQVSHDDRYMFEMLSLEGYQAGLSWNTILNKRAAF KESFANFKVAKVAQMTDADVEKLMQNPAILRHRGKLKATITNAQAFMQVQAEFGSFDKYI WQFVNGRQINDHIRIPEEIHAHTPLSAKISADLKQRGFKFVGPVIIYSFMQAIGLINDHE IECMYNPG >gi|269838509|gb|ACXB01000002.1| GENE 58 66762 - 68084 434 440 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 14 432 6 417 447 171 28 3e-41 MKTNDSYADAPITEITPQLTEGKAAVLGFQHLLAMYSGDVIVPLLIGGFLHFTAAQMTYL VSIDIFMCGIATLLQIRTTPLTGIGLPVVLGCAIQSVQPLERIGGGLGITAMYGAIIASG LFVILVAGLFSKIRGLFPPIVTGSIITVIGFTLIPVAFEDIGGGNPAAQSYGDPKNLLVG LVTVAVIVLINVWARGFMRSIAVLIGILVGTGIAALLGMVSFTPVLQASWFHFPRPFYFG VPTFNLSAILTMIMVTLTTMIESTGVFFALGDLVGKEITQTDLKRGYRAEGVAAILGGVF NTFPYSTFSENVGVLQLSGVKSRKPLYYAAGFLILLGLLPKAGAMATIIPSSVLGGAMLV MFGIVGIQGVRILQKVNFNQTKDILISALSIGMGLGSTVDPQIYRALPQACQMLLTNGIV VASITAVVLNLLFNGYDSSR >gi|269838509|gb|ACXB01000002.1| GENE 59 68547 - 69077 653 176 aa, chain + ## HITS:1 COG:no KEGG:PEPE_1834 NR:ns ## KEGG: PEPE_1834 # Name: not_defined # Def: saccharopine dehydrogenase related protein # Organism: P.pentosaceus # Pathway: not_defined # 1 174 1 178 180 171 57.0 8e-42 MKILAIGMDRPVSDVVAAELNALPEVKVTIAEVQEAMGSYDVLYVDLLHLGMDEEFETVV DRLEEQQLQVNKIVFLATAGMDNEIDPTWIEVQDVKELMLEVKYVAKLVDETELPYTIIR PVEVKSEVQNQGAEITPEGQPIPTAIVSERAVIKLVKQAILTEEYQNQSVGISNPN >gi|269838509|gb|ACXB01000002.1| GENE 60 69087 - 72650 2517 1187 aa, chain + ## HITS:1 COG:lin2369 KEGG:ns NR:ns ## COG: lin2369 COG3857 # Protein_GI_number: 16801432 # Func_class: L Replication, recombination and repair # Function: ATP-dependent nuclease, subunit B # Organism: Listeria innocua # 8 1181 11 1153 1157 484 28.0 1e-136 MPLKFMYGPASVDHLDAVAETIIELQQQQKQRKIYYLVPNHIKFQSEIQLLQKLREKSDS AGPVFAQKDIQILSISRLAWFFLRNSSIYQYPRLTNSSTSMLLYRIIVEHQDELLLFHNI DAQLGLIQEITSQLAEFKQGNVSPENLSQIIDQLAENEDPQLDLMAKLHDLNIIYTAYDE AIQQKFVDSSDILRALTDQLAKMDLHAQSFVISGFSNFTAEELNLIQTLIKANATVVIDL VMERNPLNEKLSENSLFFENEKLFFKINEWARENGIQVVSPRVVTKKRVNDDLRKLERYW VASTQGQLGLNGHEQNNSVEVLEFNSRYAEVEHVATAIRQMMTKDDRLNFSDFSVLTRHL SDYDTIIKPIFDQFDIPIFYDMQVAMKNHPLLELINALFDVQKRHFRYEDVMRLLKTGLL RPENDADPDGKDFVKSVQITENYVLRQGIYGSKWLQKAPWQYQRFNDVDMEQQTDEEREI NRRINEIKDYVVKTVNPFFNQLAVAENGAEAAKALYQFLMRNHVDQRLLAWRDQWIEDGN LAKAAEPEQTWETFVTMLDEFVDILGDQPFDSNNFIGLLNAGFENATYSQIPSTLDQVLI SESGMVQMMDRKVVFIIGATDRAMPEQIQDNDFLSQEGKAQVSDQLADDQFLKMSNERQM RQEPYLNYLTFMIGSQRLIFTYPKRGNDGTDFKLSPYVERIKAYFEIEVQCLPSRPAVDQ PLIQPFIGSKRSTLSHLVQYARSMKESKQPADVRWNLIYSILEAGRWHDLTERLMGSLSY KNVPRKLKPDIVTQLYGDKIYASVSKLEEFFRNEYSYFLKYGLKLQERETADLSPADTGQ YFHAAMDNLVKVITQADLNFNEVNQTQIKQVTKRVLENMRQDSQFDQFNSTYRMGYLRNQ LDRTVETMVTAIFKQLAQTRMRPIASEQMFGQIGLKEGLPALNFKVNGKQEVNVRGKIDR IDKINIEGQPYLGVVDYKSSTRKFDFADAYYGLAMQMLLYLDVVQQNRQRIDPHEQARLS SALYMIFQDPLLKATDLKVQDEDQLQQALFKKFSLNGFVLNNEELLKEIDKTVAETGKSA VYPFDFTKSGSLTKASLNNVVSETELQDLIKHAEEKVIEAGKRIFSGEVDLNPVQWPDRT TALEYSPYKEIMQFDAMLPENNYRVLEKLDKETVLRKIEEERKKNGN >gi|269838509|gb|ACXB01000002.1| GENE 61 72640 - 76356 3105 1238 aa, chain + ## HITS:1 COG:lin2368 KEGG:ns NR:ns ## COG: lin2368 COG1074 # Protein_GI_number: 16801431 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) # Organism: Listeria innocua # 6 1237 14 1229 1235 729 37.0 0 MATRTYTPSQQQAIDSSGHNILVSASAGSGKTSVLVERVIQKIINGEDVDRLLVVTFTEA AAAEMKERIRAAIMKKISEVKDADLQNHLSLQLGKLNNANISTLHAFCMAVIRNYYYVID LDPAFRIMDPTESELLKEQVWADLREELYESDEDGQFARLTRNFSNDRSDAGLQELMLDL FEFANANPDPEAWLTKIANNYEVQTDQVMEMDFVKQILAKIKTQLIQIYQTDLNLTERAI NGGEPLQKAAANFQAEVAGLKTVIDQFDQPNWDALQQAMVNFKFAQLPRGKKPEVQEFNL EAKPLRNEFKAEFNGLVERYFKLKNDQLIAIFKDAREIMLKLIEVQQQFSDRFLQEKLTR RSLDFSDLEHFALQILQNQSEEGQAVRRNFQEKFNEVIVDEYQDINPLQETILTAVARED PGNMFMVGDVKQSIYAFRMADPSLFISKSRRFKQSGQPDERIILAENFRSMQNVDDFTNL IFNQIMDQAVGEIAYDADAQLKFGAKYYPAEVQNDTEVLLFDDQQNENTADQEPGAIITD KNDGQLQMIAQRIKRLFADQTEVFDRDTQEMRPLKYSDIALLHSTGNNNLNIVDTFKKYG IPIEVSNAQDYFQTTEVSIMMALLKIIDNPYQDIPLAAVLRSPIVGLDENELAFLRISKK NGHYFESVLYFQNEFKIDYQNEFQANLKRKIDQFLAQLQHFRKLSQQCTLVDLLWEIYQE TGYLDYVGGMPDGPQRQNNLHALYDRAQSYEESSFKGLFQFVRFVEKMREKNKDLAENPV VTDTEAVKLMTIHSSKGLEFPIVFLIDADHGFNNSDTKGRYVLDRDAGMGITVKDFVHRL EVDTMQKNWIIDVRQRKMLAEELRVLYVALTRAQQKLIVTGALKAATPTLEKWAQAADTG ELLLPEAERGKAKNFLDWIGMAIMRVPSVMENYPEVSSRKLDSFAGVEVKLKVVNRADLL AGQRSDTGIEQGTPPTLEKMDVNSDINDADQIRAILNFKYHDIEATQTTAYQSVSEIKRV FDDPDKLEMDFSAVDRDQKIRPQKRFVTDQLMTPRFMSEVSQPKPTEIGTATHLILQQLD LREPVTQAVIKDKIRELVMNQVLEEAVAKRIRINSILDFFESELGQLMLAHPEQVHREEA FSLLLPAKGLFPNVVGNQDVLIHGIIDAYFELDGRVILLDYKTDFVLPGSPQQGIQKVID RYQGQVNLYAQALSNILGKPVNEKYLYLLSIGKLVEIQ >gi|269838509|gb|ACXB01000002.1| GENE 62 76893 - 77372 470 159 aa, chain + ## HITS:1 COG:lin0321 KEGG:ns NR:ns ## COG: lin0321 COG1576 # Protein_GI_number: 16799398 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 159 1 159 159 203 69.0 1e-52 MNIKIVGVGKLKEKYLKQGIAEYAKRLSKFCKFQIIEVPDEKAPESLSDAQMEMVKEKEG ERILAKIKDREYVFTLEIKGKERSSEELAEEIAKLTTYGHSNITFVIGGSLGLSPAVMKR ADTAISFGRFTLPHQLMRLVLTEQIYRAFMIQSGSPYHK >gi|269838509|gb|ACXB01000002.1| GENE 63 77589 - 78023 420 144 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|270289915|ref|ZP_06196141.1| ## NR: gi|270289915|ref|ZP_06196141.1| predicted protein [Pediococcus acidilactici 7_4] # 1 144 1 144 144 237 100.0 2e-61 MSRTQRLVHFDFWMNNFLILPLLIISLALSNLLPGLATFVIAFLITTVGGAIQRHHHQSM GVKYNQFFYPGDDEREQKIVYAILRSVTSWFIASCFILFLSLVFIPLFTLSAKTTIAFIG TGLAVIFLTANAIYYFLWFKYDPQ >gi|269838509|gb|ACXB01000002.1| GENE 64 78016 - 78225 331 69 aa, chain - ## HITS:1 COG:L126409 KEGG:ns NR:ns ## COG: L126409 COG1476 # Protein_GI_number: 15672309 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Lactococcus lactis # 1 66 1 66 97 72 59.0 3e-13 MKNSITRRRKHLKLSQAEVAQLAGVTRQTINAIENNKYDPSLSLAFELAHILNTTVDQLF MYSREVDHE >gi|269838509|gb|ACXB01000002.1| GENE 65 78763 - 80250 1237 495 aa, chain + ## HITS:1 COG:lin0288 KEGG:ns NR:ns ## COG: lin0288 COG2723 # Protein_GI_number: 16799365 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Listeria innocua # 6 494 1 485 486 596 59.0 1e-170 MVEELIKKTSRQMPDGFLWGGATAANQLEGGFNEGGKGLSVSDVYTFDSKRPKSEWTKQW LGMTHEQVAQAQDPNSKEFYPKRIGVDFYHHYKEDIKLFAEMGFKAFRMSIAWTRIFPNG DEKQPNEDGLNFYDAVFDELNKYNIEPVVSLSHYEMPLNLVTNYGGWTNRKVIDFFVKFA ETVFKRYRKKVKYWMTFNEINSVKHHPYVSVGVIEEGAKNIEQEKYQGAHHQFIASALAT KLCHEIIPGSKVGCMISYQMLLPYTCNPEDVQATVEAQRVSLFFSDVQAQGKYPAYTNRM FKEKNVHLKAEPNDAEILRKYPVDYVSFSYYMSSTVSAHPEKLEHAEGNLITGGIKNPYL KSSEWGWQIDPVSLRIALNQLYTRYQKPIFIAENGLGAKDQVDKNGKINDQYRIDYLREH IKQMKEALYDGVDLFGYTMWGCIDIVSASTSQMSKRYGFVYVDQDDDGKGTKQRLRKESF YWYKKVIGTNGEDLS >gi|269838509|gb|ACXB01000002.1| GENE 66 80346 - 81197 354 283 aa, chain + ## HITS:1 COG:lin2530 KEGG:ns NR:ns ## COG: lin2530 COG3711 # Protein_GI_number: 16801592 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Listeria innocua # 1 283 1 282 285 193 35.0 3e-49 MRIKSVINNNVVLVNTNDEDECVLVGRGIGFSKKPGEFVEEDRIQKKFLLADKGTMAKFS RILNEVTSEELLVTSKIISMARQELKVKLSESIYISLTDHIHYVIERYHQGKLMTNTFLW DIKRYYPKEFEVALKAVHLINKKFNIKLKDDEAGYIAFHFINATNDIGEDGNTALLTKLV HEIINIVSLNLDMVIDSSDISSYRFITHVKFFSQRLIKRMQSADETESDLFNLVRNKYEK SYKIVKKIDLFLNKEYQYSMSKNDQLYFMMHIHRLIAHEKLNK >gi|269838509|gb|ACXB01000002.1| GENE 67 81293 - 83131 1331 612 aa, chain + ## HITS:1 COG:BH0296_2 KEGG:ns NR:ns ## COG: BH0296_2 COG1263 # Protein_GI_number: 15612859 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Bacillus halodurans # 102 457 3 362 368 328 46.0 2e-89 MDYSVLGSNILKNIGGENNVQDLIHCATRLRFTLKNRSLANKEEVEELDGVITVVESGGQ FQVVIGNNVGYVFDAIMAMTGLGTATQSNTEENQDKGNLFDRFVDMISGIFSPILGLLAG SGVLKGLLALGVSLGMNAKDGTYIILNAAADSMFYFLPIILAVSAARKFKANQYIAIALA GSLVYPAIVTAYTEGTKLTFLGIPVILSQYSSTVIPAILAIWVMSKLQHFFEAKFHESVR NLLTPFLCLVIMVPLTLLVVGPVSTYASGLLASCYLWIYNVSPLISGAVMGAGWQIFVIF GLHWGFVPVMLNNISAFHRDTLGAMVGPAVAAQTGAALGVFFKTHKTKMKGLSLSAFISG LFGITEPAVYGVNLKLKRPFIIGIISGGIGGAIAGASGAAALAVATRSILTIPVYMGHGF LGYVVGYFGAMLLALTLTLIFGVEEQDSDKENISEETTLIKKDTLLSPVSGQVKPLSTVN DPTFSSGAMGAGFSVDPSEDAIYAPADAEVTMLFPTKHAIGLRTDSGAEILIHIGIDTVK LNGEGFAALVKTGDHVKRGEKLIEFDRKKIRDQGFDSTVVVVVTNTDSYLDILNQHENED VETGKEVLSLMI >gi|269838509|gb|ACXB01000002.1| GENE 68 83151 - 84560 722 469 aa, chain + ## HITS:1 COG:BS_bglH KEGG:ns NR:ns ## COG: BS_bglH COG2723 # Protein_GI_number: 16080977 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Bacillus subtilis # 2 467 20 481 481 485 51.0 1e-137 MFPKDFLWGGAIAANQAEGAWDVDEKGIALSDVIRGGIIKGKPDQYIYPDKYYPSHEAID FYHRYHEDLKLMAGMGFNCFRTSIAWSRIFPTGEETQPNEKGLAYYREMFTTMKELKMKP VVTISHYETPLHLVNKYNGWESKKLIPLFERYCKVLFENFGDLVPYWMTFNEMNNVHTIP FAAAAIRLHGEENHQLQQKYQAAHNMFVANAKAVKLAKRIMPKAHMGIMLSLSGAVLYPA TTKPDDVLATMNLQRRSLFFADVQLQGKYPRYFERICKEHHLNLDRTQEELQLINDYTSD FLGFSYYRSSVYAAGESQKGGTGGLLGLENKYLKKSDWGWPIDPQGLRYLCNILEDRYHK PMFIVENGLGAEDKISDDGKIYDSYRIEYLKDHLKVIDEAIKDGCEIIGYTWWGPIDIVS AGTGEMKKRYGFIYVDKDNNGNGTLKRMKKESYNVYKEIISTNGKSLYK >gi|269838509|gb|ACXB01000002.1| GENE 69 84667 - 84894 251 75 aa, chain - ## HITS:1 COG:no KEGG:PEPE_1827 NR:ns ## KEGG: PEPE_1827 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 74 1 74 75 82 56.0 3e-15 MTFAISRFFWVAATIFNVILGAIGAVLPIMPGTPFFILAFFCLKKASPELHQRIVHTKLM VWLETKFPLLEHWLH >gi|269838509|gb|ACXB01000002.1| GENE 70 85064 - 85453 378 129 aa, chain + ## HITS:1 COG:CAC1468 KEGG:ns NR:ns ## COG: CAC1468 COG0454 # Protein_GI_number: 15894747 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Clostridium acetobutylicum # 1 127 14 142 142 85 33.0 2e-17 MAIWLDGNLSAHHFVDPQYWKQNQGAVEAAMRQATVYVAEDERCIRGFAGLQENYLAGIF VSADVQGQGIGGRLVTQLQHDYSELSLAVYDQNPAAIRFYLSHNFQTIKRQIDEATQQPE LIMQWRQGL >gi|269838509|gb|ACXB01000002.1| GENE 71 85659 - 85853 242 64 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|270289923|ref|ZP_06196149.1| ## NR: gi|270289923|ref|ZP_06196149.1| predicted protein [Pediococcus acidilactici 7_4] # 1 64 24 87 87 97 98.0 2e-19 MTVGFLMAIFNLLFFAAIRFVKNRVFDVAYFSLDWVSVLYWPILASTACFILVFLLGSVR VKAA >gi|269838509|gb|ACXB01000002.1| GENE 72 85935 - 86060 105 41 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MQRVRSLTGVFLVLLIYLGPTLIIVAGNMISLTIMERNIAN >gi|269838509|gb|ACXB01000002.1| GENE 73 86369 - 86617 57 82 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|270289925|ref|ZP_06196151.1| ## NR: gi|270289925|ref|ZP_06196151.1| predicted protein [Pediococcus acidilactici 7_4] # 1 82 15 96 96 145 98.0 5e-34 MALPLAQEMYHLIQNEAGKTYIPSVVINYQLNSFCAVWGLTSIITYVSSFLYSYRTLMKM KNTKQHRFLKILKTVFSASWLC >gi|269838509|gb|ACXB01000002.1| GENE 74 87022 - 88209 1099 395 aa, chain - ## HITS:1 COG:BS_ackA KEGG:ns NR:ns ## COG: BS_ackA COG0282 # Protein_GI_number: 16079999 # Func_class: C Energy production and conversion # Function: Acetate kinase # Organism: Bacillus subtilis # 1 394 1 394 395 407 50.0 1e-113 MLKELVINAGSSTLKWKLFSMPDEQILASGLVDRIDLPASVFTAQQPGQEKYRITQDNIT YDLAATMVLSYLKDQGVVEHLHEISGIGHRVVAGGEYFKDSVLVDNEVLAQIKELSQYAP LHNPIEARYIEIFMQLLPKARQVAVFDTSLYAEMPKVNYLYPIPYEYYTEYGVRKYGAHG TSHRYVAQRAAEMLGRPLEDLKLITCHLGSGSSITAFDQGQVIDTSMGFTPLGGVMMATR AGDLDASLVAFLAEKLEISVEEVVDILNQKSGLLGISQLSPDQRDLEEAAPTNPQAQLAL DMFINRVVRFIGSYVAELGGLDAIVFTAGCGENAIEVRQKIADQLDYFGLAVDASRNDVR GKERKTSPDNAAVDVLVVPTNEELMIVRDVQRLAN >gi|269838509|gb|ACXB01000002.1| GENE 75 88292 - 89662 1336 456 aa, chain - ## HITS:1 COG:STM4519 KEGG:ns NR:ns ## COG: STM4519 COG1012 # Protein_GI_number: 16767763 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Salmonella typhimurium LT2 # 1 454 1 453 456 442 51.0 1e-124 MAYQSVNPYTGKLIQTYPSTTDQEVEVALKNADEFYQLAKTQPIEKRAEKLQLIADTFRE NLDDYARLITTNMGMLFTEAQAEVKKTIEFAEYYAQNAAKLLEDTPYNDVPGVRAHVKYQ SIGAILLVEPWNFPYTQIMRVFAPNFMVGNPVLLKDPSIIPDCSDAFATVTQKAGIPTGA FKNLLINYDQVNTIIADPRVQGVALTGSEGAGKKIAAEAGANLKKSTMELGGTDVFIVTE DADLGQAIKVGAKARLTNAGQVCTSAKRFIINSKVYDQFLDGLIAEFAKRKIGDPQDPKT TLAPLSSKSAQEKLQKQVDMAIAGGAELLWGDNTPFEGPGASFHPLILSGMQPDNPMYDQ ELFGPVAQVYKVDSDEEAIELANASQHGLGGTVFTGDLDRAEKLASQIETGQVAINQMLT SHASLPFGGVKLSGYGRELSDLGIREFVNAKTIIDG >gi|269838509|gb|ACXB01000002.1| GENE 76 89968 - 90390 587 140 aa, chain - ## HITS:1 COG:L153973 KEGG:ns NR:ns ## COG: L153973 COG1970 # Protein_GI_number: 15674083 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Large-conductance mechanosensitive channel # Organism: Lactococcus lactis # 1 123 1 121 122 118 57.0 3e-27 MLKEFKEFVSRGNVLDLAVGVIIGGAFTSIVKALVNYLINPLIGLFVGGIDFSDWSFKVA GATFKFGSFINAVINFLIIAFVVFIIVKTVNKFVPKKAEEEENTDEVDNSEIYLKEIRDA LIKDPDLLEQVREQSSSSEK >gi|269838509|gb|ACXB01000002.1| GENE 77 90584 - 90778 91 64 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLFMDEKILKKSFWCFTFNKTKTCAKSQLVPLNQKSTIMPNSGIMVDFQLMLANYPTLVP LSLD >gi|269838509|gb|ACXB01000002.1| GENE 78 90834 - 91154 363 106 aa, chain - ## HITS:1 COG:BS_ebrB KEGG:ns NR:ns ## COG: BS_ebrB COG2076 # Protein_GI_number: 16078792 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane transporters of cations and cationic drugs # Organism: Bacillus subtilis # 2 101 3 102 117 75 43.0 2e-14 MGYMYLSFAIVGELIGDNLLKASAGFTRPVYGISALLSYGICFYFFSLSLKTINLNIAYA VWAGIGILLTAVIAFLFWKEPINLGNILGIFFIIVGVVILSFYGEN >gi|269838509|gb|ACXB01000002.1| GENE 79 91398 - 92369 937 323 aa, chain + ## HITS:1 COG:BH3692 KEGG:ns NR:ns ## COG: BH3692 COG1609 # Protein_GI_number: 15616254 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus halodurans # 1 304 1 312 337 164 30.0 3e-40 MATVKDVALRAGVSLGSVSNYLNGKRLKPKTASRIKKAMDELDYHQNIIASGLKKNKSMS IGIVVNSLTDFFSMSIVSEIENYVENYGYSIIICDCREDKQRFEEKIEFLLNRSIDAIVV FHQDESSPMLEKVVEQAVPIVAIDAPIHGIQSDVVLVNNYESSREGVVDLINRGYQKIGI ISGQPRNYISRERQGGYEDALREHDLPINQQYIWQGNYTIQSGVEGATRLLTKHPEIEAL FVINYYMSLGALKALRQNFSKRHVEMLVFDHFFVNDIFYPSISSIEQPVATIGKTAGRLL IERLVKGKEGNYETIYCKNSLRT >gi|269838509|gb|ACXB01000002.1| GENE 80 92430 - 92564 61 44 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFLKALALFRGACYYFGENETIQKKVVMYSIGFYFYPKNETFQI >gi|269838509|gb|ACXB01000002.1| GENE 81 92579 - 92896 523 105 aa, chain + ## HITS:1 COG:no KEGG:BCB4264_A2417 NR:ns ## KEGG: BCB4264_A2417 # Name: not_defined # Def: putative PTS system, cellobiose-specific IIB component # Organism: B.cereus_B4264 # Pathway: Phosphotransferase system (PTS) [PATH:bcb02060] # 1 99 1 98 101 70 37.0 1e-11 MNILLACGGGMSSSILAEALSKEAQNNGVTWEVNESSIDRVEDDLQEKDYQIVLLAPQVS FRKKYIAGLAEEKGAKLVLIPMTMYTPAKAKELFQLVNKEADHEL >gi|269838509|gb|ACXB01000002.1| GENE 82 92886 - 94145 1335 419 aa, chain + ## HITS:1 COG:BS_ywbA KEGG:ns NR:ns ## COG: BS_ywbA COG1455 # Protein_GI_number: 16080890 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Bacillus subtilis # 11 415 17 433 444 247 36.0 3e-65 MNFDTISEKMGAVANNRYLTAIRDGMAVIIPVSIIGSFFTILLNLPIDAWKAFIQPYASM LSIPMYYSISLMAVYCVFSITSSLCKFYDLDPVSTSVLAEMSFFILAIVPNVLSAKTAGM EPGTYLPLANMGAQGLFTAILCAIFSVEVVRFFYKKNLIIKMPEGVPSAVGKSFSALMPG VVIIVVSFVLKEILKLDVNGILTWIFSPIGYFGHDTFLSAVIPVFLITIIWLFGVHGMVI ATPILYPYWYANLNANTDAIAHGGAPVHFMTEQFFQWFVWVGGAGATLSLAILLAFFSKA KFSKTMGAVTIIPAIFNINEPLIFGIPIIMNPYFAVPFVLAPTAMAAVTYLAMKLHMVAY TTAVAPWTLPGPIGAWMATGFDWRAIVLCIVNILISMVIYWPFFKAYDKNQLKLEKVDD >gi|269838509|gb|ACXB01000002.1| GENE 83 94149 - 95243 960 364 aa, chain + ## HITS:1 COG:lin1829 KEGG:ns NR:ns ## COG: lin1829 COG3589 # Protein_GI_number: 16800896 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 2 360 4 359 361 306 43.0 6e-83 MFGISVYPSKQSTAECVTYIDKAADLGYQRLFTSLIELEGDPEETIARFKTVIHHAKQRK MWVSLDVNPSLFQKLNVSYDDLSFFKDLGADILRLDMSFDGMPESLMTYNEHDLTIEVNI SNDTGNVANILTYRPLKSKIIGCHNFYPQRYTGLDTEYFLQTTQKYKEMGLRTAAFVSSN VATQGPHPYNAGLPTLEIHRGRPIVEQVQYLNSTKLIDDVIIGNACASDEELAQVAKLNQ QLPEFLIQFTPGTTELEKQIILNNLHFNRGDINSYAIRSTFVKLKYRQVNIPVNNAKHQL TRGMVTIGNDDFGQYKAEVNIVKQPMENADELKNVVATIVPNNQALIDFIQPWDKFKFID ADKF >gi|269838509|gb|ACXB01000002.1| GENE 84 95264 - 95599 358 111 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|270289934|ref|ZP_06196160.1| ## NR: gi|270289934|ref|ZP_06196160.1| predicted protein [Pediococcus acidilactici 7_4] # 1 111 1 111 111 186 100.0 5e-46 MEGLEEICFEIISHSGQAKGLLMEAVTDSRAEHPDYSAIETMLKDARDELKVAQKAHLKV LSDFAQSGQGDAVNPLYIHAEDQMMSAEIFLDLLSELITTNKELQEIKQQL >gi|269838509|gb|ACXB01000002.1| GENE 85 95815 - 97044 1113 409 aa, chain + ## HITS:1 COG:SP2146 KEGG:ns NR:ns ## COG: SP2146 COG3669 # Protein_GI_number: 15901959 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-L-fucosidase # Organism: Streptococcus pneumoniae TIGR4 # 14 283 23 305 559 85 28.0 1e-16 MVEDKILNFEKMGLGLFIHWGLYAHFAEGEWAQNILEVPNYSQAFTHFNPDPKKIRQWVT LAKQNGFKYIVLTAKHHDGFCLFDTKGISEFDSMHTPFKADVIKIFVDECHRQGIAPFLY FATYDWHNPKYTADFPGYLAELRQLIRLLATNYGEIGGFWFDGNWDKPNADWQTDQLYSE IRQLQPQAMITNNTGLEQQGVNQGEAVDVLTFERGNPQNIKHEQHGRYFAAETSMTLNRH WGNAENDLDYVAARQLIEQICQSRKVGANLLINIGPQFDGSIDLPSQALLELVGKWMRVN GTAITATANETHPTYIAENNDKNFIKGDYLFVTGLQNIGNHNVVLGGEQAQEIIFQGQMP QRKIKRIVWLDNGQSVDFQQSSDELKILADSFRYGTHLVVRVAQITFVD >gi|269838509|gb|ACXB01000002.1| GENE 86 97124 - 97501 500 125 aa, chain - ## HITS:1 COG:VCA0927 KEGG:ns NR:ns ## COG: VCA0927 COG3152 # Protein_GI_number: 15601681 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Vibrio cholerae # 1 121 4 111 116 63 34.0 8e-11 MVTAYKKFWNNLFDFSGTAKRAEYWWPVIINYIIGGLAVSIITKLMGHPIDDIYNWRDLS TNVVVQIVTLIVWVGTLSLKFRRLHDTDRSGWWVLIDLIPLIGTIWFFILMILPSKPNRW DGQRA >gi|269838509|gb|ACXB01000002.1| GENE 87 97576 - 97881 252 101 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|270289937|ref|ZP_06196163.1| ## NR: gi|270289937|ref|ZP_06196163.1| predicted protein [Pediococcus acidilactici 7_4] # 1 101 1 101 101 144 100.0 1e-33 MPLFACFLDFLALGTYFIQLNHPSNPIYVVGTVIQIIITIGLLLIAIGYRGPRFTAWRPA GYSYLTIRYGIIIMSLVINGLVLFLYGLNLSGINSVIFTDF >gi|269838509|gb|ACXB01000002.1| GENE 88 98311 - 99006 651 231 aa, chain + ## HITS:1 COG:SPy1552 KEGG:ns NR:ns ## COG: SPy1552 COG2315 # Protein_GI_number: 15675448 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 110 226 237 353 359 100 35.0 2e-21 MEIEDEILGNLKPVKQRLLKYGFQEKDGQLVFTKKIIDGDFSVKISIAPTGQVTGHIFDL AFGDEYTNFRAKYVAGEFAGKVRETYVALLKSIADQCFTFDDHAHVGQKWIVPANPKYFD VGKAFRENSTIIWKQTSNIKVNDLVYLYVTSPISAIRYKCLAVEVNIPQNYQDANIKMNK AMRIHLIRKYDKTQFALPVLKQYGVTTVRGPRHMPKQLTHYMQVQEGDGDE >gi|269838509|gb|ACXB01000002.1| GENE 89 98999 - 99547 250 182 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148360238|ref|YP_001251445.1| nucleotidyltransferase PLUS glutamate rich protein GrpB PLUS ribosomal protein alanine acetyltransferase [Legionella pneumophila str. Corby] # 12 170 168 334 601 100 38 6e-20 MSNSLSDLSLEELWQLFPIQLVAPRPKWQTWYAEEERRLKHLLPANAAISHVGSTAIANI WAKPIVDILVEAPHANHATIKEILEQNDYICMAQRENRSDFNKGYLPQGFAERVFHLHLR VPGDNDEIYFRDYLNNHPEIAHQYEELKLALWKPYEHDRDGYTAAKTEFVKKYTQLARRG KA >gi|269838509|gb|ACXB01000002.1| GENE 90 99588 - 99869 307 93 aa, chain + ## HITS:1 COG:L89201 KEGG:ns NR:ns ## COG: L89201 COG3760 # Protein_GI_number: 15674012 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 7 90 7 90 163 87 45.0 7e-18 MEASQLVQAKLTELNIPFEIVNHPPATTTAEADSYIKGISGVRTKSMFLTNRRKSAYYLL IMDDQKHLDMHKFAEIVGEKRLHLASSASLIKK >gi|269838509|gb|ACXB01000002.1| GENE 91 99866 - 100075 222 69 aa, chain + ## HITS:1 COG:no KEGG:SGO_0838 NR:ns ## KEGG: SGO_0838 # Name: not_defined # Def: YbaK/prolyl-tRNA synthetase associated domain-containing protein # Organism: S.gordonii # Pathway: not_defined # 1 69 94 162 162 100 66.0 1e-20 MKLAPGIVSPFGLLNNAERDVQVYFDKDIVDEQRMSFHPNTKEQTIFLATTDLFKFIEAV GFVYRVVEL >gi|269838509|gb|ACXB01000002.1| GENE 92 100285 - 100974 591 229 aa, chain - ## HITS:1 COG:BMEII1016 KEGG:ns NR:ns ## COG: BMEII1016 COG0693 # Protein_GI_number: 17989361 # Func_class: R General function prediction only # Function: Putative intracellular protease/amidase # Organism: Brucella melitensis # 2 224 3 228 235 188 43.0 9e-48 MQKVLVVLTNVDHYQGTTDLTGLWLGEAAEFVDEMTQVGIEVDYVSPQGGFVPLDPRSMK YADSAILKIYESADFKKRALTASLAPQDVNPADYSAIYYTGGHGVMWDFPDNSELQKIAM AIYRHHGYISSVCHGIAGLLNLKENGQYLINGKNITGFTTSEEILAGKKSVVPFLNKKAA EDHGAHFRQKLAYRKYAIQDGRLITGQNPFSVRAVAKKLIVALKNPAAL >gi|269838509|gb|ACXB01000002.1| GENE 93 100977 - 101306 315 109 aa, chain - ## HITS:1 COG:no KEGG:LSEI_1894 NR:ns ## KEGG: LSEI_1894 # Name: not_defined # Def: transcriptional regulator # Organism: L.casei # Pathway: not_defined # 1 108 1 108 110 126 58.0 3e-28 MDNLNQIKTEFSNLSDFLIAIGDEKRQAIIMALLAENACQGLRASELTSVTKLSRPAVSH HLKILREAHLIKYQRVGTKNYYYLSHQIKEIEQLQNLLIHISDCINEGD >gi|269838509|gb|ACXB01000002.1| GENE 94 101474 - 102505 986 343 aa, chain + ## HITS:1 COG:AGpA656 KEGG:ns NR:ns ## COG: AGpA656 COG0604 # Protein_GI_number: 16119675 # Func_class: C Energy production and conversion; R General function prediction only # Function: NADPH:quinone reductase and related Zn-dependent oxidoreductases # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 18 333 40 355 359 263 44.0 4e-70 MKKQNLVAEINQYGQSEVNLVERAIPEVQNSDILVEVVAVSVNPVDLKIIEGKLKLILKY KMPLKVGSDFSGKVVKVGSNVKNYQVGDYVYGRVQKDRMGTFTNYLVVDEGDLALKPQNL TFEEAASLPLVALTSYQVLHEAMQIKPGDRVLIQAGSGGIGTVAIQLAKLAGAEVATTTS TKNVAFVKELGADHVIDYRKENFAEKLSDYDYVFDTLGGQNLENAFKVVKPSGKVVTISG IPDAKFARSYGLPRWKQALFAIASRKITKLARQAKADYSFWFMRPDGKMLAQITQLVEEN KLKPIIDSTFTFNQIQAALDYSRKGHARGKIVIDINQDLSKEK >gi|269838509|gb|ACXB01000002.1| GENE 95 102593 - 102733 123 46 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227510766|ref|ZP_03940815.1| ## NR: gi|227510766|ref|ZP_03940815.1| XRE family transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 45 1 45 245 68 71.0 1e-10 MEFSKVLKKRRKELQITQQALADRLFVTRQTVLRWENGLSYPNLEG >gi|269838509|gb|ACXB01000002.1| GENE 96 102853 - 103575 324 240 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|255974634|ref|ZP_05425220.1| ## NR: gi|255974634|ref|ZP_05425220.1| conserved hypothetical protein [Enterococcus faecalis T2] # 2 186 78 263 365 69 27.0 2e-10 MIKDYILIVVFSIIPTVVKINSVENQSIIKHYLLSSFTLTGILAFITDTYNFSIIGELIL NITLILLVIFQVVSEEQDITSVKAFCNFCLFILLLFTITHSFLELIKDLDSRDTFLILLD YFSDFIFWTLNIPLLFAWQYIGQFDVMENFLSTKKTARSLFKHFIELFFKKIKYSSLSFD KHIITNIQIGGLGKRCYLITVNNSFQKKDINTMLLLFKIGSVDACIYRKNHVPKVLPLTR >gi|269838509|gb|ACXB01000002.1| GENE 97 104367 - 105068 675 233 aa, chain + ## HITS:1 COG:lin0315 KEGG:ns NR:ns ## COG: lin0315 COG0745 # Protein_GI_number: 16799392 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Listeria innocua # 3 233 5 237 237 326 73.0 2e-89 MPKILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALEKVESEEPDLILLDLMLPKIDG LEVARQVRAKHNIPIIMVTAKDSELDKVVGLELGADDYVTKPFSNRELVARVKANLRRQD QFQQSNEEVKNNIKIGPLVINSDSYSVTRDGAQLDLTHREFELLHYLAQHTDQVMTREHL LQTVWGYDYFGDVRTVDVTVRRLREKIEETPSNPQILVTRRGVGYYLRNPETD >gi|269838509|gb|ACXB01000002.1| GENE 98 105711 - 107498 1711 595 aa, chain + ## HITS:1 COG:lin0316 KEGG:ns NR:ns ## COG: lin0316 COG5002 # Protein_GI_number: 16799393 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 1 595 20 610 610 501 45.0 1e-141 MLLVVTLEVVGVIFVRQLETQNLSQFKSQVQLQPYVENEISAQLERSNTKKANDQIADII GNINNQNITEIRVIDAKGVIRGTSNNADRSMVGQKTTDRNVKDVIYNTRSYQQISYNKTN NTRYFISVVPLINTSGATNNLTGVVYIRANLESVYQNVNNITLIFVVAALIAITIGLFLA VLIARAITRPIEEMRQRTMQIARGDYSGQVQIYGDDELGQLAAAVNDLSVRVEESQELTE SERRRLDSVLGYMTDGVLATDRRGRITIVNEMATDFLNLENDQIVGKSILDILDLRGSVT LRDLLENQDPEVLDLSNDEQDLILHASFALIQRESGFISGLVCVLHDVTEQQKIDQDRKR FVSNVSHELRTPLTSMKSYIEALVDGAWKDPNVAPNFLKVTQEETDRMMRMINDLLNLSR MDLGTARLDKEYVNLNELFNHILDRFDMILKNGEKSEKNYTIKRDFTRRDIWVEVDTDKI QQVLDNIMNNAIKYSPDGGVITCRLVETHNHVIMSITDQGLGIPKEAISHVFDRFYRVDK ARSRAQGGTGLGLAISKEVVQMHGGRIWVESREGEGSTFYISLPYEPFEEGDAWE >gi|269838509|gb|ACXB01000002.1| GENE 99 107498 - 108793 975 431 aa, chain + ## HITS:1 COG:SA0019 KEGG:ns NR:ns ## COG: SA0019 COG4863 # Protein_GI_number: 15925725 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 10 428 16 449 453 62 20.0 2e-09 MKDTKTRRIIRHALLAILAIMSISLSWLIWTNPARYGGSHHIANEKVQSNQVKRDMSDVI LPTQIIYTNHDKQQLVNNSKKNLPKMTVAEISKWRLESSTRVSRGNKERFMDYATMDRSV MLKYPSNITTQIFNGVYDQKLNSNYEISQVVINLDKRNEFFLLNDKTYDVYQIKVSRQNL KNLRQLVQGNDQVYAVKETVMNHRLINDYYKAPAVPYNGFLINEESSSVFTANLLTNTDA DSIDTKKTKDGVVYVTNDNTKRLLVRNNGQVTFNNAGGNGGGNSLNDNIEKSFLQMKQLG VQADTNVRYFDFQLAKRQAEFRDYVAGFPIFNEDGLGTIKVARQSNELTTSFSIYNLQVP VPSKGGTKQLPTTEEVLNQLSYQGINPKDIKDIEIGYQWAGKVAANTTIELEPTWYVNYR GEWTAYQNLAS >gi|269838509|gb|ACXB01000002.1| GENE 100 108805 - 109719 879 304 aa, chain + ## HITS:1 COG:lin0318 KEGG:ns NR:ns ## COG: lin0318 COG4853 # Protein_GI_number: 16799395 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 243 1 240 279 88 24.0 2e-17 MDFKRIEVIFIVVFAILNAYLFGSYWQYQMESGTVTSSNTSASTSILKEMRNDQITYMPL SNKKKEGYYAQSKVDTSLKGDIKHLTGQNARVVDNKLYSTITDPFTIDPQDPQKALDRFL KDRENVIAGTQYQYNANLSSDTQVVYTQMIDQRPVYSKDGQLIFYVNTSNQVTGYVQGHL VAKKQLREESELISQSRAVTLLYQYNEIPNSSKIEWANLGYTRLLSTDEGAVYVPTWVIG IKNKNSANIEVKRINAFSGVLIKKDGQTPVKKAKTTDKAAAADASGTSTGSAEDGTASTN STNA >gi|269838509|gb|ACXB01000002.1| GENE 101 109762 - 110565 762 267 aa, chain + ## HITS:1 COG:L582 KEGG:ns NR:ns ## COG: L582 COG1235 # Protein_GI_number: 15672377 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily I # Organism: Lactococcus lactis # 3 264 4 267 270 326 61.0 3e-89 MSEEGLKVSVLSSGSTGNVTYIETPEHKVLVDAGLSGKKIAGLMESVGRDIHEVDSLFVT HEHSDHIQSVGVLARKYGINVYANRGTWDAIKNKVGKIPTEQKYIFDPNTTKSLDDLDIE SFAVSHDAAEPQFYEFHHAGKSFVILTDTGYVSDRVAGTIRNADGYLFEVNHDTEMLRMG GYPWPLKQRIMGDHGHLSNEDGANALMDVIGNRTKKIYLGHLSLHNNMKELAHLTVSSMM QNHDLAVGHDFEILDTDHEKADPLALI >gi|269838509|gb|ACXB01000002.1| GENE 102 110683 - 111906 1110 407 aa, chain + ## HITS:1 COG:lin0320 KEGG:ns NR:ns ## COG: lin0320 COG0265 # Protein_GI_number: 16799397 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain # Organism: Listeria innocua # 41 406 151 498 499 273 48.0 4e-73 MKNNKIIITAAIAGLLGGGVAYGGASFVQNRMEATTTAVPTGSNKSGETQTSNVKVNVSS QSSKAFSTVKDSVVSVINLQKENTGDTDNILNSIFGGSESSSSKSSSDKLQTASEGSGVI YKKSGDTAYIVTNNHVVSGSNSLEVIMSNGKKLPAKIVGTDSVTDLAVLKINSAPVTTVA SFGDSDNIKVGETALAIGSPLGSEYATSLTQGIISAKKRTIETSNSNGQGTGEATVIQTD AAINAGNSGGPLINLAGQVIGINSMKLSSSGSSTSVEGMGFAIPSNEVVSVIDELVKNGK INRPALGVTLVDLTAISSDQQKSILKLPSSVTGGSVIMSVDSGPAKTAGLKKYDVVTKVD GKSIKDTAELREALYKHKVGDTVKIGYYHSGKYKTTDVKLTKTASTN >gi|269838509|gb|ACXB01000002.1| GENE 103 112190 - 113299 1287 369 aa, chain + ## HITS:1 COG:BS_yvyH KEGG:ns NR:ns ## COG: BS_yvyH COG0381 # Protein_GI_number: 16080619 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine 2-epimerase # Organism: Bacillus subtilis # 1 364 1 363 380 451 60.0 1e-126 MKKIKVMSIFGTRPEAIKMAPVVKAMAHDEHFAPITVVTGQHREMLDQVLKIFKIKPDYD LNIMQKDQTLSSITSKVLLGMDKILQEDRPDLILVHGDTTTTFSAGLSAFYHQIPVGHVE AGLRTWNKYSPFPEELNRQMTDVLTDLYFAPTTTSRDNLLRENHPENQIFVTGNTAIDAL KDTVSENYHNEILEEISEDHRIILVTMHRRENQGEPMQRVFKAIRQVVDETPDVEVIFPV HLNPKVQQMAETELGNDPRIKLVAPLDVLDFHNIAARSYLIMTDSGGVQEEAPSLGKPVL VLRDTTERPEGVAAGTLKLVGTDPQAVKEQMNALLNDPAKYAEMAQAQNPYGDGHAAARI LDAIAKTIK >gi|269838509|gb|ACXB01000002.1| GENE 104 113322 - 113507 140 61 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLYPLQKSLSFLSGGLSIINNLVVSQRLIGIFYLILEYFSVKESYFSFVIASLTTFQKAF S >gi|269838509|gb|ACXB01000002.1| GENE 105 113825 - 115246 1275 473 aa, chain + ## HITS:1 COG:CAC0694 KEGG:ns NR:ns ## COG: CAC0694 COG2211 # Protein_GI_number: 15893982 # Func_class: G Carbohydrate transport and metabolism # Function: Na+/melibiose symporter and related transporters # Organism: Clostridium acetobutylicum # 21 464 2 442 449 409 51.0 1e-114 MADSVHSSAPDHEVLLNDSTKRIPKSQQIAYGFGDMGNGFMFDLGQAYLTKFWIDGTGIA AGVVGAIFAFTKIFDAVMDPIVGAAIDNRKRGKHGKFRPIMMGSAVILAIMTVVTFTMPS GLTMTQKITYALVTYMIWGVFYSLTNDPYGSLASVMSRNLEDRSFMSTTRQIGSVAAQLI AGVAFIPLMQLTSGGHPLHGYTISAAIFGVMGVLGFLVCFLGTRENLHIKRDEDAKKEGM KDYFKVVFTNGPLGALVLMTLFTISAMNTNNQMMVFYAQYNLGNIGLQPIINFIMMGSSV AGVFMVPYLTKHFGQKKTAIVSLFIGAVANAINFFLPTNLYTFILFVTIGYVALAIPNGI TWAMVSNVIDYGEWHSGTRKEGITYAAFNFSRKIAQSIAALVSSGLLAITGYVANHTQTG SALNGIKIAMTLYPAICLALAGVILLFLFKLDDDKFNRISNDLDHGRWEKGTL >gi|269838509|gb|ACXB01000002.1| GENE 106 115268 - 116821 1801 517 aa, chain + ## HITS:1 COG:no KEGG:LVIS_0149 NR:ns ## KEGG: LVIS_0149 # Name: not_defined # Def: hypothetical protein # Organism: L.brevis # Pathway: not_defined # 1 516 1 523 526 634 62.0 1e-180 MALENLLLDVKKLIENPDADVDEGIYRPSVQIDRRNVYFIYREGIKKSLVVYEDARKARD FQADETLVDDDYVLLKGPLNFFNNQALAKRFAWIKPSSRHGHKYTLGLGDRLGIASNAHL KLLKGRGIFPVLAQQSIRELLLSNRTFTDVIEAASWSVFEEGYRDGWGADGDHVKNAYEI DYAVRSGATMITLDLTEKTHTEYLAYSDEDLDAKYNELAPEIREKFEKKYLNHRFELGNG DVVEFSPRDLKEAVLAFNEGVLFAEWVNEKFVKPYALDFEVSVDETPVSTTPAQHYFFAN ELADAGITPETLAPRFYGEFQKAIDYIGDLDRFEKDFGEHEAIAEKFGYKLSVHSGSDKL SAYPVIARLANQHGWHVKTAGTNWLEALRVVAHEDPQFMLELYKFSYDNLDDVKDFYVFN AQTDGKAPKPEDLTEKDVNMLLVDDDARQVLHTMYGSTLGYTENYQYVYRDRLFDILLHH ADEYDKYLSLHMAEHVDLLQGIETTKQAVLDKYEPQD >gi|269838509|gb|ACXB01000002.1| GENE 107 116845 - 118263 1001 472 aa, chain + ## HITS:1 COG:L0019 KEGG:ns NR:ns ## COG: L0019 COG1904 # Protein_GI_number: 15673610 # Func_class: G Carbohydrate transport and metabolism # Function: Glucuronate isomerase # Organism: Lactococcus lactis # 1 471 1 465 472 595 59.0 1e-170 MKLLDKDFLLENEMAKTLFHDYAEKMPIIDYHCHLSPQAIYENKNYPNISRIWLNEGTYG DHYKWRLMRPNGVSEDLITGDGDEYQKFLAWADTIEHAYGNPLYEWTHLELRRFFGIDEP LTVKSAPQIWEKANQLLATDDFKPRNLIKNSNVKLVATTDDPASDLHYHKLLQDEEAESG FKTVPAMRPDKLMQIEKPGFGEYLQTLAKAAGITINSFQDLAKALRQRFEFFKDMGSRLS DHSLPSYHFVELSEAELDQILTKAADGATLTERERDGYTTALLEVLMKLNNEFDWVMQFH INSLRDANKPMYEKLGPDTGFDSMGTQPDIVDGIQKLMTKMSAEGVVPKMIFYSLNPNDW MELATLMQSFQGQTKQRIQLGAAWWFNDTAEGMDEQLRVFAQQSLLPNFVGMLTDSRSFL SYPRHEYFRRVLCNFFGRLVAQGRVPDDAEILGKVVQNIAYNNAHEYFGFFD >gi|269838509|gb|ACXB01000002.1| GENE 108 118288 - 119907 1492 539 aa, chain + ## HITS:1 COG:L0241 KEGG:ns NR:ns ## COG: L0241 COG0246 # Protein_GI_number: 15673614 # Func_class: G Carbohydrate transport and metabolism # Function: Mannitol-1-phosphate/altronate dehydrogenases # Organism: Lactococcus lactis # 1 537 1 539 544 592 54.0 1e-169 MVKLSDNYITHRAEFEKAGIKVPTYDHDAVAQKGVTQPRWIHFGGGNLFRAFHAAIADEL IEQGELDAGLLVVDTFSKEVVERVYHDNHNQVLRVVTKADGTLESAVFGSVADAVFDSAE APSQELRKAFENQSLQLVTFSITEKGYALTDGEGNLTASVAEDVAAGPENPVNNIARLTS LLYDRFNHGQLPLALLSTDNFSQNGDRLKKSVLTIAKGWAANQLVEDEFLDYLQNPDKVS FPLSMIDRITPNPAKAVGESLEAQGVENMTPFKASYGAMLASFANTEEAHYLVVEDAFPN GRPALEKAGVIVTDRATVNDVDEMKVTTCLNPLHTALAIFGSLLDYHSISEEMKNADLVD LIKQIGYVEGLPVVKDPKVINPKAFIDEVVEKRLPNPYIPDTPQRIATDTSQKMAVRYGV TIQHYLADPTLKVTDLKFIPLTIAAWLRYLLALDDKGQAFEPSPDPLMDYLKEQLQGIQL GENANLQAQIKPILANQKLFGVDLVESGLAELIEADLAEMLQGPGAVAQTLHQKLNQVN >gi|269838509|gb|ACXB01000002.1| GENE 109 119925 - 120914 887 329 aa, chain + ## HITS:1 COG:mll3875 KEGG:ns NR:ns ## COG: mll3875 COG0111 # Protein_GI_number: 13473319 # Func_class: H Coenzyme transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoglycerate dehydrogenase and related dehydrogenases # Organism: Mesorhizobium loti # 41 299 35 288 533 143 37.0 4e-34 MAKYRIAVVNSSSFGQVFKEHWQALEKIGEVKRFMLPTDIDGKSLAEKLQGFNVVVASVT PNFNQEFFDNKDELLLISRHGIGYNNVDLAAAKAHGTKVTIVSPLVERNAVAENALANLM ALVRQTVPAGDAIKADHYEDRARFMGNQFSGKTFGVIGAGNIGSRVAELFGIFGGPVLIN DPDPKAPEGWLENNNVQRVSLDELLERADYISLNASLNDDDYHLIDAAALKKVKKGVYFV NHARGALIDENAMLAAVEAGQVGGYAADTMEVEPVRADHPFLKNEHFLITPHTSAYTYEC LHGMGEKCVSDVQNIVNERPLVRELTAKL >gi|269838509|gb|ACXB01000002.1| GENE 110 120934 - 122478 1282 514 aa, chain + ## HITS:1 COG:SA2294 KEGG:ns NR:ns ## COG: SA2294 COG1070 # Protein_GI_number: 15928085 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar (pentulose and hexulose) kinases # Organism: Staphylococcus aureus N315 # 1 514 1 510 517 486 45.0 1e-137 MKYIIGMDIGTTSTKAVLFDLKGRIVQVAHQLYPIIRENVDSAEEDPDVIYDATVAVLQQ VIQAAHFDAAQDQLLAISLSAQQHSIMGVDDEFNPVTKLAIWADNRAEKYADQAKRDGSG LALYQRTGVPTHPMAPYYKLQWYKHEAPARFKQAKYWLGIKSYIIWKYFGQFLEEQPMAA ATGLFNTREMQWDVAALQQLGLQASQLPQVVEATHQVHGLNPQLAKQIGIPAQTPFVMGS SDGVATTIGVGAVRKGQIAIDIGTSAAVRTMVDEPQFDPKGRIYCYPVLPGKWIIGGPIN NGGVVLRWARDQFFNAEKSTAELLNQDPYDLLTKIAGEAPAGSKGLLFHPFLGGERAPIW SGNARGSFFGLTQTHTRAHMLRAILEGIVYNLFTVNLALEEVMPKGDRQILATGGFAHSE LWKHILADVFEEPVKVPKSVEGGCMGAMVIAQISLGLAKDLTKVEDFLVKDAVNTYEPNP ANFRAYRDLMPIYIRLSRELAGEYDSIAEYQRTH >gi|269838509|gb|ACXB01000002.1| GENE 111 122672 - 123589 551 305 aa, chain + ## HITS:1 COG:lin0622 KEGG:ns NR:ns ## COG: lin0622 COG0604 # Protein_GI_number: 16799697 # Func_class: C Energy production and conversion; R General function prediction only # Function: NADPH:quinone reductase and related Zn-dependent oxidoreductases # Organism: Listeria innocua # 17 230 1 215 313 83 30.0 6e-16 MNKLPNNQIKRAQDVMMKAIIQHDYRGIDTLTVEDHLLEPMTPLSVIVKNQYVPVLPYDW MTEDGKLKDIRPVKLPMVIGYGFAGVVERVGILRNKNLIGKKVIGANLSGAAKEYINSQI PPLLFEVPENVALKDAATIIGGADAALHAVKTTHASARDVVLVTGASGGVGSYLIQLLKQ RGALVVAIGHPNNFDFLKEVGADYVVSYKSSLALQLKKVPTINKVVDTVGEGEILRQISN ATGALEILSLSMTNFSSLKTNQSFKFSHGTVGIQGYRDLLNLMAQKKFALIFKKYISIAK LKKLN >gi|269838509|gb|ACXB01000002.1| GENE 112 123644 - 124516 681 290 aa, chain - ## HITS:1 COG:no KEGG:LSA0541 NR:ns ## KEGG: LSA0541 # Name: not_defined # Def: XRE family DNA-binding protein # Organism: L.sakei # Pathway: not_defined # 8 285 4 281 284 221 45.0 2e-56 MSLPYEQDAIMTKSLGQKIAAERKRSHLTQKQLAQDICSQPMISSIEKGAYIPNAFLLAK LCQRLNISLDNAVLSNYPQIDGFESFNKQIQSLCNQHAYHDLLKYLSSSPIISSLYKNTD FQIFYYYQGVAEYQAHHDAQSGLKVLQLADTYRATTAKQLTSLDILVLSGIAFLQVETNA VSAGMDTFKFLLTRIKERRFTKYDENINIFFYLYGLSLFRNSHYHQSLEIVSAGIDWTTA NSSTYMLSDLFFLLSETYNILKHPTKAQDALQKSQLLEDIFKVKTFKSLK >gi|269838509|gb|ACXB01000002.1| GENE 113 124590 - 124727 165 45 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFVLKLRDLLETFFELYIGLWSIRAILIIILVLLLLVWLKKKGIL >gi|269838509|gb|ACXB01000002.1| GENE 114 125033 - 125746 274 237 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 1 230 1 228 311 110 29 1e-22 MINVLNIRSVSKAYKHGQVCANEKISIKFVPGEITALVGHNGAGKTTLLKQIIGIIRPDE GTITYQGHSFINEPEIARESIGMMPQFNFPLSGVTAKQSIMAGLRIRGVDRINSKKLTSR IIKELKIEEWQDVPGEKLSGGLQRLVSFAMTVAVPLPIIMLDEPTNDVDPVRRVLMWEYL RKLANRGCIVIIVTHNLLEVERYADRLLLLDHGKLVRDELAKTTSLNGLSNSFKGND >gi|269838509|gb|ACXB01000002.1| GENE 115 125712 - 125903 191 63 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|270289960|ref|ZP_06196186.1| ## NR: gi|270289960|ref|ZP_06196186.1| ABC transporter [Pediococcus acidilactici 7_4] # 1 63 1 63 63 125 100.0 8e-28 MDFPTALKVTIDEENLKYHFYLKNDQVGPAITWVTKKVKNGEIARYNLGPRPLNEMYKEA THG >gi|269838509|gb|ACXB01000002.1| GENE 116 125896 - 126660 610 254 aa, chain + ## HITS:1 COG:no KEGG:EUBREC_3040 NR:ns ## KEGG: EUBREC_3040 # Name: not_defined # Def: hypothetical protein # Organism: E.rectale # Pathway: ABC transporters [PATH:ere02010] # 20 253 20 253 254 224 55.0 3e-57 MDKNANRFIKNQRLGRSFWGLVCWSLLRHKYLLPTFSIVQAFLSLAIIYGLALLIPDIQT TEAIYLSSGAVVIGMIGVGCVLVAQIVNSAKQTGVVVYQCTLPVKRYEIVFADLIIWGLA SVPGIVMAGIAAYWRFHLNLTISPLSIAVVGLVQATMILIGFSIAYWLPTNMVSVATQVI MIGGLLFSPITYPEDRLPEWLTTAYGVLPFVPASKLIRTTMFQIGSFKFADLLAVLVWMV AAFGCSNRALNKRG >gi|269838509|gb|ACXB01000002.1| GENE 117 126667 - 127386 182 239 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 4 209 2 217 245 74 26 5e-12 MTTLQIKNLKKKIGSRQVIDIKESNFQSQKIYGIVGPNGTGKTTFLKCVCGLLTPDEGEI YINGKRTTNKNRGEFLRLMGSVFAQSDSIFDLSVNELLEEHYYFFDLPRPKNWQVLLNKV GLNVDPAMKIGEMSLGMRQRFLLSIAISHQPQILILDEPFNGLDPDGVAQTKQIIRDFAQ QNLVMVTSHSFGDLANVVTDVVVMEKGKMGQSESLATINKRFADGLLGFYHKELAQFNG >gi|269838509|gb|ACXB01000002.1| GENE 118 127407 - 128108 550 233 aa, chain + ## HITS:1 COG:no KEGG:EF1334 NR:ns ## KEGG: EF1334 # Name: not_defined # Def: AgrC domain-containing protein # Organism: E.faecalis # Pathway: not_defined # 5 217 17 227 243 82 29.0 9e-15 MKHLKFEFNKVKRYLMPLFYITVATQTAALYFFAMVGRFDHDETNSIMMSYAGIAGLASV ITLCVMAIYGAVLASKFIVRDYIGLNKNKTYLLPVNRKELFNAKVASLSLAVLISEVLGL VVADLIFVLTEMLFPLVSESVTSHLGSLGVSAMVCVCFTASIILLASFVGIYRSSSISVV VTSVVLVVLLGNVLTRMMVSFSLLSILCALLIVLLTISAKSMMANLIDHGEAE >gi|269838509|gb|ACXB01000002.1| GENE 119 128135 - 129406 859 423 aa, chain - ## HITS:1 COG:no KEGG:EF1335 NR:ns ## KEGG: EF1335 # Name: not_defined # Def: sensor histidine kinase, putative # Organism: E.faecalis # Pathway: not_defined # 6 422 9 427 436 182 29.0 2e-44 MIGSLLGFIAYAFLINFFFSDGLAQFRLTPQTILTVALLCLTVALNMLFSPQNMVPYANI VVIIALIMTLAAQYAVSFKEAIFLAGIFLATTILSEALVFFFFQNFSIIDPSHHYLFDVV TTSIANVIEMLFVLGMKVLFFKYHAYSQTLTIPLMAALTSIPVISIVVLLSFLITCVQKQ IALDAYQILIIFGITYVNLCVLYLYSSLTKHMKKISQISLQNKAMQAEMKYIAEVKKTQS TIRRIRHDLKNRNLVLMGLLDQHKITEAKNYLAKSFDQLAKTSTFYTNDPVLNYLLNEKN ALAQANHIDFQIHALISKQISLDNDILSVLIGNLIDNAIEANQRLNAGVSRYINLTIKQF KKDLLIEISNPYDDAEKKTRAHRQTEGLGLKNIKSIIEHYNGLYKQKTTNSTYSVSIMLL NIV >gi|269838509|gb|ACXB01000002.1| GENE 120 129415 - 130122 654 235 aa, chain - ## HITS:1 COG:CAC1581 KEGG:ns NR:ns ## COG: CAC1581 COG3279 # Protein_GI_number: 15894859 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Response regulator of the LytR/AlgR family # Organism: Clostridium acetobutylicum # 1 204 1 206 234 87 29.0 2e-17 MLNVAICDDEPQMATAVENILAKYNPALFTISTYYNPAKLAKDLDRLTFDFFILDIELSH QSGIGLAKIIRKYDYNVPIIFLTNYSEYMEDVFQVQTFDYILKPASPANLFPVLDKVIKY LNIDTGHFSFSSNRIVHNLKLSDIVFFEKQRRQVIIHTKSAIFTTNMTTSAILEQIDADF VQVHNSYIINTLYIEEVSSTFVILNYAGNSAEIPVSRKFRSIARDQILERLKSRI >gi|269838509|gb|ACXB01000002.1| GENE 121 130242 - 130613 286 123 aa, chain - ## HITS:1 COG:lin0806 KEGG:ns NR:ns ## COG: lin0806 COG0789 # Protein_GI_number: 16799880 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 1 120 1 120 123 113 52.0 8e-26 MNYSIGQFSKVCGLSIDTLRYYEKEKIIFSKRTSNNRRYYTDQDVAWVQFVLRLKQTGMS IKKMKLYAQLRYVGDETIPARTKILFDQLAILHANLKETEQHIEFVEDKIQTYLATLTNR TTI >gi|269838509|gb|ACXB01000002.1| GENE 122 130760 - 131140 377 126 aa, chain + ## HITS:1 COG:L35675 KEGG:ns NR:ns ## COG: L35675 COG0599 # Protein_GI_number: 15673958 # Func_class: S Function unknown # Function: Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit # Organism: Lactococcus lactis # 10 124 7 121 122 128 57.0 2e-30 MEKSKRFIDGLRKLSEVDNLAGQEVIASLAGLTEDVGKYIVEFAFGEIYQRKGLSLKQRE MITISCLLAQGGSESQLEVHINGSLNVGLTEKEIIETFIQAIPYVGFPRVLNAIKVAKLV FKHRGK >gi|269838509|gb|ACXB01000002.1| GENE 123 131394 - 132410 939 338 aa, chain - ## HITS:1 COG:BS_yjmH KEGG:ns NR:ns ## COG: BS_yjmH COG1609 # Protein_GI_number: 16078302 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 10 315 3 310 333 219 40.0 5e-57 MTNNSSKRTTIIDIASHLGISHTTVSRALNGSPKVKETTRRKIVEAAHQLGYVPNQNARG LNQGRTYTIGLFFTDLQNGTSGLFLTSIILNIREQLPENYVLSINSINDHDRLSFFDGVV VVSQSVKDEEFINNLVQMKIPVVVLNRKTQIQPVYNYWLDNYSAAREMTTHALQAGHRNV ALIRGSLDYASTQERSQGYFAAIQEWDAAHPTKLFAHPPIEGEYTAKGGCRAMEELLARP NFPDYVFIENDDMAIGALHAINTHPNLKHPVSVSGFDDMDIATYTSPSLTTVHSPITEMT ALGIATLKHLLTNDELDDDIPFKKCFKMPIIYRESLRK >gi|269838509|gb|ACXB01000002.1| GENE 124 132584 - 133483 778 299 aa, chain + ## HITS:1 COG:L53699 KEGG:ns NR:ns ## COG: L53699 COG1023 # Protein_GI_number: 15674167 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted 6-phosphogluconate dehydrogenase # Organism: Lactococcus lactis # 1 299 2 302 302 367 59.0 1e-101 MEIGLVGLGKMGINLAQNMLRHQHKVVGFDLNNALVEKAIGYGATGAASLAEMVQKMTAP RVVWVMVPAGKPTDVTIAQLGDLLEAGDYLIDGGNTFWKDSLRHNRLISEKGIHYFDAGS SGGWRGALNGGNFMIGGDDAAAFETIRPLFEDISQEDGYLYTGKAGSGHYLKMVHNGIEY GMMAAIGEGFEVLEASQFDYDNEAVAKLWNHGSVVRSWLIELAQDAFSKDPHLAEIAGRM HSNGEGQWTVEEAMDRHVPTPVIYAAVAERYRSMQDDTFTGKVVAALRNEFGGHAVDKK >gi|269838509|gb|ACXB01000002.1| GENE 125 133835 - 135631 2046 598 aa, chain + ## HITS:1 COG:no KEGG:Bcer98_1097 NR:ns ## KEGG: Bcer98_1097 # Name: not_defined # Def: hypothetical protein # Organism: B.cereus_NVH # Pathway: not_defined # 186 574 272 624 743 105 27.0 7e-21 MKYTKYTVLAMSALTLGTVGAKVTHAAHTNQHAVSAANSQEANAKKATDAVHALFANKEY TKLASGVTSAKVDAAEALVHKYVLTYKDSQLLLSLCNSARHKLSDSSDDASAIKAAEKVV DALFTDRTHAKLATGVTAEKIEAAVKTIEKNVPHSNSNYQRLMSLCDRAKSFSRASNNDS NTKNDIQKATDAVNALFADGSHTKLAKGVTTEKIEAAQKLVDKIPTSNPNYVELRNLCTK AKNLLNTAIKNDVKVATKAVTALFADSSHTKLAKDVTAEKIEAAQKLVDKIPTNNENYQR LNDLCQKAKKLLAENNDPAVKEAEKAVFALFSDEAHTKLAKGVTAEKIEAAQKLVEKNVS QSNNNYQMLMTLCRKAKILLDNANTEDKIREAEEAVYALFADSSLSSVADSTNSAKVEAA KDLVAKNVSVANPNFSRLWNLCLKAERLLEASGTIRPASSEGEQEAIDAIKALFSDDTYT KLSDKANSAMLKKANALFVKYVKPGNSNFTVLYKLYQKAERLLESSNDIRPAASKEEQAV IDAVNALFTDGTHTKLAAGVDRDKINEAKSMIAKYLTFDNRNTMILYNLCAKALELLN >gi|269838509|gb|ACXB01000002.1| GENE 126 135747 - 135833 93 28 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MGIYSILVYGMYIIVLKEYNLTGYINSE >gi|269838509|gb|ACXB01000002.1| GENE 127 135826 - 136047 179 73 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNSVLSRKESDDLRKWITRGDLVAFGGTVVTMFLVSKVDFMHVHEGWKFLTTLLTFVVLD SVCTWWIDTPTAK >gi|269838509|gb|ACXB01000002.1| GENE 128 136102 - 136944 566 280 aa, chain - ## HITS:1 COG:BS_yxjB KEGG:ns NR:ns ## COG: BS_yxjB COG0500 # Protein_GI_number: 16080952 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Bacillus subtilis # 15 276 7 279 282 170 34.0 3e-42 MNKIELTSQFIQQHLNQFQCPVCQGAFASAETGTVACENQHTFNVAKKGSLFFLSHPVKT EYTDEMLRYRHQFLTAGFFDPMLEQVRKLLAGGLILDAGCGEGTTTKWLADHSRGDLVGL DISKPAINIASAGVALENQPLFMVGDLARLPFADHRLDAIVNILSPANYQEFDRTLAPDG VLVKVIPGNHYLQELRHLVYPEGPHATYNNTPVKKHFIEHYPQAKFSTIRYEFPLDQPLF TALFNMTPLTWQAQENREQLLQRPLNSITAEFEIAVVHHF >gi|269838509|gb|ACXB01000002.1| GENE 129 137131 - 137451 365 106 aa, chain + ## HITS:1 COG:no KEGG:PEPE_1781 NR:ns ## KEGG: PEPE_1781 # Name: not_defined # Def: ArsR family transcriptional regulator # Organism: P.pentosaceus # Pathway: not_defined # 1 105 1 105 106 145 82.0 6e-34 MVEHSKALAAFKKNIPLLDALSDERRQQIMITLGESEKGLTVGELTKIIGLSQPAVSHHL KQLKDLKLVSVRKKGTSNIYQLTIGQALDQVQKLVDILRNDKKLFN >gi|269838509|gb|ACXB01000002.1| GENE 130 137521 - 140718 3480 1065 aa, chain + ## HITS:1 COG:lin2460 KEGG:ns NR:ns ## COG: lin2460 COG1511 # Protein_GI_number: 16801522 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 1 1064 3 926 927 561 37.0 1e-159 MVRKEWKFIRNNKLILISVLAIIFIPFLYSIFFLKSVWDPYGDTKNLPVAVVNLDQPVKY QGQRLAVGDEMVDNLKHNHQLGWHFVSAKKAKEGMKDKKYYTVVTIPKDFSANAATVTDK NPKKMQLKYSTNASLNYIGKVISDVGTEKLNSEVREQVTKSYATAMFDQVKTAGKGFKQA SDGAKKLKDGAVQLNDGTKTYTAGVSQLHDGIATMAVSVKPLQAGVAQLADGSSQLTNGL DQLNGKTGALSSGVSQLANGSGQVTTGAVALSKGLNELQQKSGALVTGVSQLNNGALQLK VKVPQYVNGVYQLNDGIQELNAKTGQLVGGIKQLSSGAGALSAGVKQYTDGVSAGAGQLQ GGVAKLANDTKDMPSSINALHNGIADIAKSSKQLADANGKISTGLGQVADQVSANDISKQ AAALKQQMASIQTQLVALNKATAGQTNGGNAAQSINNQLSEIKSEVGSLANSSKTTTSTS GGVSQATINSKIDGAGLSAEDAAKAKSALAGVANGSQNKTTSQTVDTNKIASIQKKITDV QGQVTKLNDLANKQAEINKQVTSLTASFQKLAAGANELTGNSDDMKQLAATLKKLAAGSQ EVTTNLQALSSGSNTVAGKVGEFAGSASELTDGVAQLDSGAKSLASQTNKNSKDVKKLVS GSQELSSSLAMLDKQTPTLQSKIGQLAAGSNQISAGTGALAGGINQLSNGISAASSQMPT LVSGVSLLANGGNQLAAGSSQVTGGLNTLNGQVPALVSGVAQLDNGGHQLNTGIQTLNSS TGTLINGVNQLNTGAAELDANSGALLDATKQISDGNGELSSKLADGAKQVNSVPLTDKTA NMFAAPTKLKHTNYSYVPNYGHALAPYVLSLALYVGAIVFNFAYPIRKVSERGGTPTQWF LSKVSVGTVVALGMALVETTIMMIAGIHVDHVGQFYMTAIMISLASMYIVMFLSMAFDNP GRFVAMILLMLQLGGSGGTFPMEVTNHFYNVIHPFLPLTYSILSFRQAITSGLGDGTFEQ AMGALLLFAVIALALLWFSMNQLQKHHLENKSQLDDNQKLQEVER >gi|269838509|gb|ACXB01000002.1| GENE 131 140851 - 141495 625 214 aa, chain + ## HITS:1 COG:no KEGG:PEPE_1779 NR:ns ## KEGG: PEPE_1779 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 201 1 204 211 211 60.0 1e-53 MKHMKKGSRWPVNPVVWVIVALLVILGGYKFFYPNHVEPEHTTARQSSSTKVIDVEEGSS SAKKATTKKHKHKSSKDKLWTKKQDAKLAAFISDWQQTMGQSYTGTNSGSSVTFQGVTLP DYLSTGTVYVNQQPVTMKWTTNKKDGSNYQVVAAYAGTQYLYLFTFHQQTPEVLVTSQAA SDGVNFKVTENAQLVNGFQNIVNGQSESTNSSQQ >gi|269838509|gb|ACXB01000002.1| GENE 132 141600 - 142328 655 242 aa, chain - ## HITS:1 COG:lin0901 KEGG:ns NR:ns ## COG: lin0901 COG2188 # Protein_GI_number: 16799974 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 18 229 13 224 237 140 38.0 2e-33 MVSDKCINTRKFRKLCAKKIMNHELQPGVMLPDQNQLAKEFNTTRITISKAIQILIIEGL VYSKRGAGTFVRKDVQFNNDFNTDVDKPLGTTMTHPNKKVTSKHIHLTARIATKDEQEHL LLEDGETVYVIKRTRLIDGKPFSYEQTIMPTKIATITKEILQKSVYEYLQKEHHLEFAGS HRQIMARKVSDEDVHFLGEKKGDPILVISQVNYLVDGTPFEYSESHFPYQNSVVSADIKL EH >gi|269838509|gb|ACXB01000002.1| GENE 133 142469 - 143842 917 457 aa, chain + ## HITS:1 COG:L32812 KEGG:ns NR:ns ## COG: L32812 COG2723 # Protein_GI_number: 15672801 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Lactococcus lactis # 1 457 1 453 453 510 54.0 1e-144 MQAKLPDGFLWGNSTSSMQTEGGAHEGGKGPSVYDTYKATAETSDWDVAIDNYHHYEEDL DLMAQQGMNCYRFQISWSRVNPQGDGEFNEEGIRYYDNLINALLKRGIQPMICLYHFDMP LHLAKQYNGFLSRHVVDAFVRFGKKMVDRFSDRVKLWITFNEQNLYSQTEAFRIAGYLNG DRTDEELQRIAHHVMTAHVQVANYLHEHSDAKIGGMLAFVETYPNSSLPEDVFAARQIDE YLNRNLLDVWVNGHYSTEVSTYIERHHFDIDFTDQDRQEFAKLKSDFIAFSYYASNVVDA TKIPAGTMPNRYLDYGAVANPHLTATEWGWNIDPLGFRDVLTKTYNAYGIPMFPIENGIG YREEFHGQMIQDDYRIAYHRDHLRALMAAVNDDGVAVLGYLGWGLIDIPSSAGNMEKRYG MVYVNRGNHELRDLKRVPKKSYYWFAKVIKSNGADLD >gi|269838509|gb|ACXB01000002.1| GENE 134 143867 - 145213 1215 448 aa, chain + ## HITS:1 COG:SP2022 KEGG:ns NR:ns ## COG: SP2022 COG1455 # Protein_GI_number: 15901843 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Streptococcus pneumoniae TIGR4 # 13 444 1 430 431 379 46.0 1e-105 MGDSKSGSINDRMQNSKFIAKFTEISVKVGNWVYLRSLRDAFAVILPMFIVAGIGVLLNN VVFTWFLKGDLLAKFQVVGNAIVNGTLNVAGILVAPMIGYMLAKNKGFNNPIAAAAMSLA SIFILMPNSIQLGTVASGGAKMATVTGGLSYLNTGTQGMFGGIFVGLIATGIFIKLASVK RLQIHLGENVPPAVAASFSVLLPAILLMSFFAIIAALLAGFFNADLINLIKTWIQEPLRG FNTSIVGYCVIYTLANFLFGLGIHQTVLSGTLLDPLVLVNMNENMTAYAHHQEIPNIITT SFVSNYTLVGGSGSTIALIIAILIFSKVKSSRQIAGLSLAPGIFNINEPMIFGFPIVFNL PMIVPFVLFPTIGSLIGYFATLWGWVSRTVVLVPWTTPPLIGPYLSTAGDWRSVILQLIV IIIGVFLYLPFLKISEQAARIQAEENRD >gi|269838509|gb|ACXB01000002.1| GENE 135 145280 - 145387 59 35 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MPFVHFKKLNSWDKACCLNILIRKNRPQNSECVLL >gi|269838509|gb|ACXB01000002.1| GENE 136 145436 - 146422 872 328 aa, chain + ## HITS:1 COG:L64373 KEGG:ns NR:ns ## COG: L64373 COG0095 # Protein_GI_number: 15672045 # Func_class: H Coenzyme transport and metabolism # Function: Lipoate-protein ligase A # Organism: Lactococcus lactis # 1 328 1 328 333 430 62.0 1e-120 MRYVTYLGTDAYTNIATDTWILNNLHADEPIFALWQNNNAVIVGKNQNTFGEVNQEFIDQ HQIEVVRRVTGGGAVYHDLGNLNFTLFVPLDSSANTDFKQFSEPVLKALHNLGIPAEATG RNDLVVNGKKISGVAQRYAKGYLMHHGTLLFDSNVDTMVRALNVADEKFISKAAKSVRSR VGMIKEAAPEGLTLQDFWEAVQYELTDHGRDSEILLTPEQKQEIIRLTADQFSTWDWNYG QSPNFNFKNHAKYDGGIIEVQVQVEGGVIQDINFTGDFLMLRDWRDIKDQFIGLPFEADQ IRPVFEKNQDQQYFGTISVDELTQLFEA >gi|269838509|gb|ACXB01000002.1| GENE 137 146434 - 147552 1081 372 aa, chain + ## HITS:1 COG:L0033 KEGG:ns NR:ns ## COG: L0033 COG1071 # Protein_GI_number: 15672044 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit # Organism: Lactococcus lactis # 6 372 3 374 374 490 65.0 1e-138 MAIKDDNKKILDFDLQMEDQDQSFPMLQVLNNDGEIVDEDALKRAGLSDDQMVELMKQMV FSRILHERSSKLSKQGRLGFYAPTIGEEASQIASNYAFEKGDWLFPGYRDIPQLIMKGWP IYKAFLWSRGHFEGNEFEDVNGWFPQIIIGAQYVEAAGAALGLKKRNKPNVAYAYTGDGG TSQGDFYEGMNFAGAYHAPAVFFAQNNGYAISTPRSVQTKAPHLAAKGWAAGLPSFVVDG MDPIAMYLAAKEARKWAVDGNGPVFIETITNRLGPHSMSGDDPLRYRTQEDIDNWTKREP LIRFRKYLTDRDLWSEDIENDWADIVNSQIDDAVKQADGIAKQKISDFIEQTLEVPGQAA QDQINKFRGEGK >gi|269838509|gb|ACXB01000002.1| GENE 138 147555 - 148535 1017 326 aa, chain + ## HITS:1 COG:L0034 KEGG:ns NR:ns ## COG: L0034 COG0022 # Protein_GI_number: 15672043 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit # Organism: Lactococcus lactis # 1 326 1 326 326 468 70.0 1e-132 MAKKTYIQAITEAQDLALANDENVIIFGEDVGKNGGVFRATDGLQEKYGEDRVFNTPLAE SGIGGLAIGLTTQDYRPIMEIQFFGFVYEVMDSIAGQMARGRFRFHGTRKFPIVVRSPYG GGTKTPEMHADSLEGLMAQTPGLRVVMPATPADAKGLLLSSIESDDPVIFLENLRLYRSI RGEVPEGYYTTPLDKANVVREGKDVTVVTYGGMVHTSLAAAEDLAKEGIDVEVIDLRTVS PLDLDTIGKSIEKTGRVVVAQEAQRQAGIGAMVMSEISERFIMSLDAPIGRVAAPDSVYP FALAENEWLPKEDDVIDKIKEVVNFD >gi|269838509|gb|ACXB01000002.1| GENE 139 148528 - 150147 1812 539 aa, chain + ## HITS:1 COG:L0035 KEGG:ns NR:ns ## COG: L0035 COG0508 # Protein_GI_number: 15672042 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes # Organism: Lactococcus lactis # 1 539 1 532 532 535 57.0 1e-152 MTEIFKMPDIGEGMAEGEIANWLVKVGDDVKADDAVAEVQNDKLLQEILSPYSGKVTKLF VDAGTVVKVGEPLIEFDGDGTGGGADSKDNAADAAPAADKGSDNAPSSDAEIFNMPDIGE GMAEGEIANWLVKVGDEVKEDDPVAEVQNDKLMQEILSPYSGKVTKLFVDAGTMVKVGEP LIEFNGDGSGAGSGNAAPAASAAPAKENAAPVNNDEPTKVGTAVASNGQVLAMPSVREYA RKHDIDLMQVPATGRHGHITMADVKNFSGGAAPAAPKAAENAASAPSAAPAAEAPKPAPA KPAPVKAGRVPLSPIRKAISRNLTQRVQTVPHVTIMDEVEVSKLMELRDQFKEQTKAKGY KLTYMPFVAKALAAAARKYPELSATIDDETQEIVYYEETNVGFAVDTDQGLFVPNVKNTA SKSIMQVAQEIDDLAIRGRDGKLKPAELQGGTVTISNIGSESGSGFFTPITNPGESSILG IGRIRKTPIVNEDGELAVGNTLKLSLSFDHRLIDGALAQKIMNELKALLGNPAYMLMEV >gi|269838509|gb|ACXB01000002.1| GENE 140 150150 - 151556 732 468 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 11 468 5 458 458 286 34 8e-76 MVVGTQAIDVDTLIIGSGPGGYVAAIRAAELGQKVVIVERDFIGGICLNVGCIPSKALIQ AGHLYATLQHGNPFGVTVGESKLDFAKTQDWKQHQVVEKLTGGVEMLLKKHKVEIVRGEA YFNDNETVNVIDGDDSHIYRFKKALIATGSRPVEIPHFKFSGRVIDSTGALNLKSVPEHL IIIGGGVIGAELAGAYMNLGSKITIIEGLDHILNGFDGELIQPVLNNFKKNGVDIITEAT AVEANQTDKDVTVTYEVDGTTKKVTGDYCLVSVGRRPNTDQIGLNNTDVKLDKRGLIEVS DSMQTSVKHIYAIGDVVAGPALAHKASYEAKVAAAAMSGEDAHDKHYVIPAVAYTNIEVA TVGETPQTVAEKKLDAKSSKFPFAASGRAMTMDQTEGFIRLVTDNPTGAIIGAQIVGPEA SDLISELTLAIENGITIRDIELTIHPHPTLGEEIMDAAEVAAGLPIHI >gi|269838509|gb|ACXB01000002.1| GENE 141 151730 - 152755 832 341 aa, chain + ## HITS:1 COG:BH0738 KEGG:ns NR:ns ## COG: BH0738 COG0604 # Protein_GI_number: 15613301 # Func_class: C Energy production and conversion; R General function prediction only # Function: NADPH:quinone reductase and related Zn-dependent oxidoreductases # Organism: Bacillus halodurans # 5 341 1 337 339 353 51.0 3e-97 MSEKMWAIGFKESLPIEEADSLVEFTTDRPEPSGHDLLVKVSAVSVNPIDIAVRKGQSEP LQEPRVLGFDAVGTVVSKGKEVTLFENGDRVFYAGSFKRAGSDSEYQLVDERIVGHAPQQ MDDVHAAAMPLTSLTAWEALFEQLQIDPEDPKKNAGKTLLIINGAGGVGSVATQLAHLAG LRVIASASRPETIQWCLDHGADQTVNHRKDLVMEVRNLGVQHVDYILELHNIDAQWEAMV ELIKPGGRIASITSTKKPVNLTDLKRKSVTFAWEWMFAKSYYGTEDLVSQHENLEKIAKL LDEGKLKSTMTKELHPMNVENIKKAHQLVESQKMMGKVVVK >gi|269838509|gb|ACXB01000002.1| GENE 142 152879 - 153094 76 71 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLQRIVRIKALIVFFAISALIWLAGGSWGTEPVSIALALPLPTNLTTKKRRILNRGHFAF LLPKFLISYVY >gi|269838509|gb|ACXB01000002.1| GENE 143 153078 - 153581 552 167 aa, chain - ## HITS:1 COG:L2611 KEGG:ns NR:ns ## COG: L2611 COG4708 # Protein_GI_number: 15672777 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 4 162 24 189 190 99 39.0 3e-21 MSTKMNVREIVISAIVAALYVAITFVFSAVSFGPLQFRVAEILNCLVVYDRRYIWGVSLG VLIANLQSSLGIIDITWGTLTTLITLSVVIIAIRKLTDNRVKLALTVIITTILMGFLVAL ELTYILKVPFFYTWATVSLGEFGVMFIGAFVMYALGKSIDLSLNKRS >gi|269838509|gb|ACXB01000002.1| GENE 144 153835 - 154713 918 292 aa, chain + ## HITS:1 COG:L74167 KEGG:ns NR:ns ## COG: L74167 COG2017 # Protein_GI_number: 15673611 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose mutarotase and related enzymes # Organism: Lactococcus lactis # 1 291 5 290 297 213 40.0 3e-55 MIKLKNRYLTVEIDNMGAQLTHVIDQPSGYDYIWNGQAWQRHAPILFPAIGKSNQDSYVL EGQTYSMPQHGFARDFDWQKVSQSETTAKLELKANEQTKRMFPFDFTLQVEYELKDHQLL TTYYVINHDERRMPYALGSHPAFNVPIDNDGIFENYHLTFSPHQKRIQRLGVNPVPFRDG KKAPWEAIKNSELALNHEMFNDGLIILDAKKIDSVVLGSTQTAHEVKLNFKDFPYLTLWT MENRAEQFLCIEPFAGLPDQAAEEPTDWKNKKGNNLLEPQETQTFTYSIEFK >gi|269838509|gb|ACXB01000002.1| GENE 145 154789 - 156297 996 502 aa, chain + ## HITS:1 COG:no KEGG:PEPE_1762 NR:ns ## KEGG: PEPE_1762 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 502 1 502 502 593 54.0 1e-168 MQDYQLQVDQIFSDNMILPFGKPFQISGLATAGATVKTTIGTQVARAIVRKDGTWDCQFR PFTNYRTSFEVKIEVQNHQLKLENVRFGQVLLIAGQSNVGFRMSQDQNFTEAQTSIPATP ITYYNVPQPAFVYEDGEVKEYQSRATHWHQVKKSNLGHVSAVGYYAAQEMARQDPKMPVG IVCCTRDGASAGTWVSETSLRKDKLLAKRVVEPFLSHIEKITDADFKADIERYHQTVKRH NRLMYNFMKSNPEVPIGEALNIVGQTPWPPPKTPDSYLRPGALFNAMVRKIRHFRFSQLV WYQGETDADQPEIYDRLLQTLINDWRATLADVSLPVYVVQLPKYADVKRHAWAKIRQQQL KVAQRLADTYLISIADTGEYYNPHPTAKMAAGQRIGRILAGRDYQATPQLGWLSLEAEQT CFHFWYVKELHATQPPLIEGYVQQKWQAVPAEIKGTDLRVHFPLGTTQARYGYSNAPTLT LFNEIGDPVSPFVVDLTTQELI >gi|269838509|gb|ACXB01000002.1| GENE 146 156569 - 156859 392 96 aa, chain - ## HITS:1 COG:BS_yneR KEGG:ns NR:ns ## COG: BS_yneR COG4841 # Protein_GI_number: 16078867 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 91 1 88 95 60 38.0 8e-10 MKFSVTSEAAQWFIKELDLKPGGAVKIFTKIYGGIPTVYPSFFLGIAPGNKNDESTAKTV VDDITFYIESGNEWIVDNHDLTVEYNGQDVDYRFSD >gi|269838509|gb|ACXB01000002.1| GENE 147 157374 - 157769 559 131 aa, chain + ## HITS:1 COG:SP0064 KEGG:ns NR:ns ## COG: SP0064 COG2893 # Protein_GI_number: 15900009 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Streptococcus pneumoniae TIGR4 # 3 131 5 127 134 87 41.0 6e-18 MRLLLMSHGNMAIETLKSAEMILGHIDNMKAIGLQPNQGPEDLQKAAEEFINDNPNQDKT MVAVDLLGGTPSNVVVRLMAKYPDLEVVSGLNLPMVIGFANQVMMGMDVDKQSLISEAQN GVVDVNAKLNG >gi|269838509|gb|ACXB01000002.1| GENE 148 157775 - 159802 1160 675 aa, chain + ## HITS:1 COG:no KEGG:PEPE_1760 NR:ns ## KEGG: PEPE_1760 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 673 1 674 674 1016 71.0 0 MAKTYQYSLRFAIDPYNWDTVKEAKLIDFCKQGQIDNVVFFINPEELNQGHPTLAQVREH WLPTIKSVAERLAKMGITTSLNPWTTLMHSDRGHRVPPELGFDTMVDYLGHASASIACPQ DDRWVNYITAIYAEYAKLKPKELWLEDDFRHYNHTPIKLACFCDRHMALYSEMLEKPISR EAFVAKMLQPGEPTPERIVYLSVARAEMKRVAAKIAAAVHQVSPATRLGLMSSFPEWHAV EGRDWDGLLDNLADGHPRVSRPHLPAYNEISPLKYSRAFERFTRVTTELVGENSDIYPEL ESYMYSPFVKSKAFTKLQLESTQMVGASGILLNLFDMMGNGIDETYDYARLLAESKPLMN LGMQHRLKQNHLAGVKVLFSPDAVFNLKTTVGKDPEELLPQEYSWLELLGTLGIACKPEK WTLQSHFTDEVLAVSGQFFNNLTDRQITELLENNVVLIDGPSVQILIDRGLGKLVYANQV ELKKARTGYQSYEQIDGMTIDGIQNPRVTMLQHTGDYYQVGYEPAASVQIISNAYNENAK KLGPVMALVNQRTLILPMNTDPKYGWESQYYSIKEKLFKRILNQITNLDYVIEMPGTKLT AVADQMVLSNFTIDDQAQIQLHLTKAKANQHWKLYFHEGAQLQSMEVTASPDSNGMLTIP YRLKGLETVILLAEF >gi|269838509|gb|ACXB01000002.1| GENE 149 159823 - 160317 590 164 aa, chain + ## HITS:1 COG:SP0061 KEGG:ns NR:ns ## COG: SP0061 COG3444 # Protein_GI_number: 15900006 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Streptococcus pneumoniae TIGR4 # 1 158 1 158 158 185 62.0 3e-47 MTITAVRIDGRLIHGQVANLWTTKLGVTRIMVIDDQVAASDIEKAGLKLARPAGVDLSVL PEKVAADHINRGGYDSQKVFIVVKRPQILLDLVNDGVKLEAINVGNMSQTDETTQLTNSI NVVQEDVDAFNALHEKGIKLTQQMVPGDQANDFMEILKKFKPKN >gi|269838509|gb|ACXB01000002.1| GENE 150 160338 - 161255 1168 305 aa, chain + ## HITS:1 COG:SP0062 KEGG:ns NR:ns ## COG: SP0062 COG3715 # Protein_GI_number: 15900007 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Streptococcus pneumoniae TIGR4 # 5 305 2 301 301 273 48.0 3e-73 MGSGIAIWQVIILTIYSMWQIMDELTVQTSLSQPIWAGIVAGLVMGDLKTGLLIGGSLQL TVLGVGTFGGASKIDANSGTVLATAFAIGTGMKAEVAVAALGVPVASLMIQTDILARFAN TFFQHRIDKMIDEENYKGIERNFLYGYLPWTLSRGIPVFLALAFGGPFVRTAVDYMNTNL SWLSNGLATAGALLPAVGFAILLRYLPVKKHWPYLILGFVITAMLSTLYANISTLGTTIA GMNAKFTTVFANLPMLGIALIGFALAAMQYNRSVKEQNMVAAAPKSADNATDLDEQDGEI HGDEL >gi|269838509|gb|ACXB01000002.1| GENE 151 161239 - 162069 843 276 aa, chain + ## HITS:1 COG:SP0063 KEGG:ns NR:ns ## COG: SP0063 COG3716 # Protein_GI_number: 15900008 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Streptococcus pneumoniae TIGR4 # 11 270 6 265 271 299 57.0 3e-81 MATNSKNKVTYKLNDKDFKQMNIRNILFNQVGWNYERMQGSSYLYLILPQLRKMYGDHTP ELKKMMKMQNQFFNTSNFFNTIIEGIDMALEEKEGVDSLETVAGIKAGLMGPFAAIGDSI FAALVPAIMGAIAANMAVQGNAFGAILWMLVNFVIMWFRWIQLKFAYKQGVSLVNEMQGQ LNALTDAATLLGVYVVGALAATMVNTQVTLVAHLGKMTVNFQDKIDMIMPKLVPALIVGA IYWMLGKKRMTSTKAIFIVIIVAVVLSALGVIGKAA >gi|269838509|gb|ACXB01000002.1| GENE 152 162153 - 162887 911 244 aa, chain + ## HITS:1 COG:SPy0715 KEGG:ns NR:ns ## COG: SPy0715 COG2188 # Protein_GI_number: 15674773 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 7 242 3 236 240 169 42.0 5e-42 MEFKYNEKRPVYSQLVDVLRKEIKNNYQPNDKLLSEREIMRKYAVSRNTVRGALSELENI GYIYRQRGKGTFVANMIDYTQKIGDEYSFTEQMKSMGRKPETRILEMYQRDADEYFSQKL KVPVGTCLIKLKRLRLADGQPIMIDRTYLPQAKFPNLSRDDLELKQRSLYAIFLEDYGEK VKVADERLSVGIISDEDAKLLNVASNTAGFLARRTTYNHKNEIIEYTISSARGDQFVYNI KYRH >gi|269838509|gb|ACXB01000002.1| GENE 153 162911 - 164086 1245 391 aa, chain + ## HITS:1 COG:SPy0716 KEGG:ns NR:ns ## COG: SPy0716 COG2222 # Protein_GI_number: 15674774 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted phosphosugar isomerases # Organism: Streptococcus pyogenes M1 GAS # 1 389 1 389 399 401 50.0 1e-111 MFNKTDDELTKMGAVITTREIQQEPELWEEAWQNYQATKATITEFLEKIENEFNEPVRVI FTGAGSSAYVGDTAAPYLTENGDRKRFRFEAIDTTKIVSTPKQYLEKDTPTLLVSFARSG NSPESVATVDIAEKYVRYLYQLTITCAPEGKLAQHAQSDENNLVLMQPARSNDKGFAMTG SFSCMLLTALLVFDVKHTDDQKESYVKAISKMGHEVIDRVDEIQKIVDTDFERIVYLGSG ALGGLTRETQLKVLELTAGQKATVFDTSMGFRHGPKSFVNEKTLLFDFVSNEAYTRQYDV DILDEVAGDEIAPVVMGVGVKSDNNFAGANFTFANGNDQIPDGYMAFPDVMFGQTVALLS SIKVNNTPDTPSATGTVNRVVKGVTIHDFKG >gi|269838509|gb|ACXB01000002.1| GENE 154 164097 - 165242 1270 381 aa, chain + ## HITS:1 COG:SP2056 KEGG:ns NR:ns ## COG: SP2056 COG1820 # Protein_GI_number: 15901876 # Func_class: G Carbohydrate transport and metabolism # Function: N-acetylglucosamine-6-phosphate deacetylase # Organism: Streptococcus pneumoniae TIGR4 # 1 380 1 381 383 420 55.0 1e-117 MEYYIHAAKFFLGSNVEMGGYLPVIDGKFGRYQKEKPTGKIVDYGDQWIAPGLVDTHIHG LLNHDVMDADAEGIDAMSKGLLECGVTSWLPTTLTASSDQLKQVVQTISDHVDDFEGAKV QGIHFEGPYYTEKHKGAQNPKYFENPSVDEFHAWQSAAQGMIRKISIAPERDRAVEFTAK ISSEGVVVALGHSDATFDQAKACVEAGATMFTHTFNGMSGLNHREPGMAGAAMSLDGVTD ELICDGHHVNPYVVKILMQTKTYQNVALVTDCMKAGLMPDGDYILGEFPVKVANGTARLT DGSDSLAGSILLLKDAVKNVVDWNVATPEQAITMASANAADSAGVGDQCGHILPGRDADF IVLDHELNLNKTYLDGVKVFG >gi|269838509|gb|ACXB01000002.1| GENE 155 165834 - 166040 320 68 aa, chain + ## HITS:1 COG:no KEGG:PEPE_1751 NR:ns ## KEGG: PEPE_1751 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 67 1 67 69 65 61.0 5e-10 MQKTWLKTGINFTMEGAGHDKKVRRSFANVDKDVSAVQVEELARALEMLLEDEVTEAQVV TTEQVTLN >gi|269838509|gb|ACXB01000002.1| GENE 156 166096 - 166323 406 75 aa, chain + ## HITS:1 COG:no KEGG:PEPE_1750 NR:ns ## KEGG: PEPE_1750 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 73 1 73 74 94 71.0 8e-19 MKQLDLEFLNAAGKTQHLKLKYAKQDLDEGTVRLAMEKMIDTKLFQKEGQLLYVTPKAAQ YVETLHEPIFDDNKL >gi|269838509|gb|ACXB01000002.1| GENE 157 166458 - 167498 1032 346 aa, chain - ## HITS:1 COG:lin2619 KEGG:ns NR:ns ## COG: lin2619 COG2017 # Protein_GI_number: 16801681 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose mutarotase and related enzymes # Organism: Listeria innocua # 1 344 4 350 353 199 34.0 7e-51 MKVNIDDFDEYQGKSVKKITLANDRQVQISLLSQGALWHEFLVPSSATCSNDNLILNFAH TADYYQNPFYLGMSIGRTGGRISKGSFTQGEQLIQLPQNEGANNLHGGPRGFHSYNWSFD TQTKTDSASVTFENSIKAESDGYPGDLKVTITYTLNNLNQVIIQYHGQAFDQPVLFNPTN HVYFNLTGNADILDHELRLNSHERLAVDQQKLPTGEFKATAGTPFDFSHFKPLASCINGL QDTTEKGLDDVYVVDNEVPAPAAVLRAPTANRQVEIYSARKGLVVFTANSFTADMPLTNG AGHPYQGIALETQTLPDSVHHTNFGNIVLPAHQVVDYQTVYQYSEI >gi|269838509|gb|ACXB01000002.1| GENE 158 167509 - 168864 1655 451 aa, chain - ## HITS:1 COG:L140856 KEGG:ns NR:ns ## COG: L140856 COG0477 # Protein_GI_number: 15673485 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 1 428 1 433 433 489 62.0 1e-138 MKKVSASFIYFFGALGGLLFGYDTGVISGAILFIEKQMHLDAWQQGWVVSAVLLGAMLGS VIIGPSSDRFGRKKLLLLSAIIFFLGSIGSAFAAGFWTLILSRIILGMAVGAASALIPTY LAELAPAEKRGTVSSLFQLMVMTGILIAYITNYTFSGMYTGWRWMLGFAAIPSALLFLGG LVLPESPRFLVKTGDTKEAKHVLGQMNNHNQAVVDKELVQIQEQAKLEKGGLKELFSQFV RPALIIAIGLTIFQQVMGCNTVLYYAPTIFTDAGFGVNAALIAHIGIGIFNVIVTAVAVA IMDKIDRRKMLFWGGFFMGISLLVMSYGLKYSHSSFTAAVIAVVAMTVYIAVFSATWGPV MWVMIGEIFPLNIRGLGNSFGSFVNWTANAVVSLTFPSLLNMFGKGSLFIGYAALCFLAM WFVYAKVFETRNRSLEDIEAELRKNDKRVED >gi|269838509|gb|ACXB01000002.1| GENE 159 168995 - 170155 1090 386 aa, chain - ## HITS:1 COG:SA0041 KEGG:ns NR:ns ## COG: SA0041 COG1940 # Protein_GI_number: 15925748 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulator/sugar kinase # Organism: Staphylococcus aureus N315 # 14 385 4 375 376 204 32.0 2e-52 MAKSINQDAMRDLNLKLMLQFLFNHPKTSRIEIANNLKLNKSTISSLYATLNRMGYVREI GHGDSSRSGGRRPILIKFNRHYGYTVSFELGHHHLRMMTNWLTGEKISFYSIPVIDKDIY EIVEIMKERIRSISIPTAEHQLMGISVAINGIVDHNQIIDSPFIDMQNVDLAQSLTEFHV PVFIENEANLAAIATRDYMTDHKFKNLIALDVHNGIGAGIIINDRLYHGQLGRAGEIGRS LFFPGFASSPTMKIEKLYSEDAIIKKFGQLKRTPYVDRQQFLEYYRADDQVAIKIMNEFT EAVVYLLFNVSQIFSPELVSLQSRIIGEIPQLMTKIIRKYEELAGANSPTKIQLSQMIED APLYGGASLLTHHLLGLEHYHLQMKI >gi|269838509|gb|ACXB01000002.1| GENE 160 170416 - 171756 1292 446 aa, chain + ## HITS:1 COG:TM1667 KEGG:ns NR:ns ## COG: TM1667 COG2115 # Protein_GI_number: 15644415 # Func_class: G Carbohydrate transport and metabolism # Function: Xylose isomerase # Organism: Thermotoga maritima # 23 446 23 442 444 506 56.0 1e-143 MSLFDRKKMEYVGNQAGLKAGNGFHYYNPDEVIHGKKMSEWLKFSVAYWHTMDQRLVDPF GDGTAQRPWDNIKDPMEQALAKVDYMFDFLDKMNIEYFAFHDRDLAPEGETLRETNANLD KVVDKIVEKMQETGKKVLWNTSSLFTNPRFVAGGATAPFADILAYSAAQIKHSLEIAKRV NSRNYVFWGGREGYESLLNTDMKLEQDHIAKFFRMAKDYANEIGYTGQFLLEPKPKEPTS HQYDTDAATTIAFLKTYGLDKDFKLNLEGNHAYLAGHTYEHEVRVARDAGLLGSLDANMG DKLIGWDIDEFPNDVMEATLVMYEMLKNGGLPTGGLNFDAKPRRQSFTMEDLFLAHTAGM DTYAAGLRVAAKLLEDHVLDSVIEDRYSSFKSGIGADFENGKVDFTDFENYIIDKPQSEL IAATKSGHLEQLKATINNYMFTVLGK >gi|269838509|gb|ACXB01000002.1| GENE 161 171821 - 173326 1453 501 aa, chain + ## HITS:1 COG:BH2756 KEGG:ns NR:ns ## COG: BH2756 COG1070 # Protein_GI_number: 15615319 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar (pentulose and hexulose) kinases # Organism: Bacillus halodurans # 1 497 1 497 498 592 57.0 1e-169 MQVVLGVDLGTSAVKVSAVDQAGKIVAQQSKEYPLSQPEPGYSEQNPEDWVMGTTVAIKR LIEVDKIKPTDIKGISYSGQMHGLVLLDDHHQVLRPAILWNDTRTTQQCKEILDVMGKDF IKITRNVPLEGFTLPKLLWIKEHEPQIFEEAATFLLPKDYVRYRMTGKIAMEYSDAAGTV MLDEENRKWSSQIAEAFQLPMEIFPPLIESIGFAGKISETYASFSGLSTDTQVFGGAADN AAGAIGAGILNTNQVLSSIGTSGVVLKYEDNAKVDYQGALHFFNHAIPNKYYTMGVTLAA GYSLSWFKKRFSNDNSFTDFVNAAKKSTVGANGLLFTPYIVGERTPYPDSDIRGSFIGID GTHRKEDFTRAVLEGIVFSFRDIMRIFAEKGSNFDTVVSIGGGAKSALWLQIQADIFNKK VVTLKNEQGPGLGAAMIAAVGVGWFDSLNECAERFVAYDQTYLPNAQNVKKYDELYNLYK KVYGQTAEISHGLMNYRREML >gi|269838509|gb|ACXB01000002.1| GENE 162 173426 - 174337 708 303 aa, chain + ## HITS:1 COG:BH1123 KEGG:ns NR:ns ## COG: BH1123 COG4753 # Protein_GI_number: 15613686 # Func_class: T Signal transduction mechanisms # Function: Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain # Organism: Bacillus halodurans # 179 282 421 521 526 65 35.0 1e-10 MEKFIPIPVVDASLYVFGGHMRTVPGGWSFFEQKHQAFELMCVIDGYQTTEINQSVSYSY GPGDVIIIAPGTLHKNWNANQFNDLTYITFHFSFENIRLESEIIRNLANTVIYAKSKLAQ ESLKTAKEIVRYSELGKQGELGKDEVNIKIQLIMLNYLYDLSKFIENHPVHCSNRFSERE AEVARQIAILIENNIGNPEKFNTFQDICNEIKISDGYGYRTFKKVYGMTPLHYVEKQRYR KAKLLLSYLDYSVEDVAEMVGVTNSSMFSKSFKKWSGQTPRDYRKQLGKKRVVRSLKDSG YFE >gi|269838509|gb|ACXB01000002.1| GENE 163 174440 - 175900 1331 486 aa, chain + ## HITS:1 COG:L0233 KEGG:ns NR:ns ## COG: L0233 COG2211 # Protein_GI_number: 15673488 # Func_class: G Carbohydrate transport and metabolism # Function: Na+/melibiose symporter and related transporters # Organism: Lactococcus lactis # 7 483 8 485 490 489 53.0 1e-138 MASNNDVAKDEFAKLSWKERVSYGAGDLAQNLIFGTVGSMLLFYLTTVFGISATVGATIF LIVRWVNVFWDPWVGAVVDRSHFKKGKYRPFILYFGIPLTICAALLFFPIEAVRGNVIYA FGSYLATALIYSFVNIPYGALNASLTRDNDEVSALTTVRMTEANIGNLMVYTFLPLFIQL ASPDKQLKDIGLFGIKLNLGDYTSPHAGGAYFSVMAIYMIIGFALLLCTYFGVKERVLPT QEETDAVKYSDLFAEIKRNKPLQVLGMFFLIGFTFMFFGNTVWPFYMQYNVGHPEWMASI NLIGSIPGIFLVFLWPIVRRKIGKKQFFYIFLTLFIVGQIILWVWQMPQFRNATALGYLG RFLQQWGITSATGYMWSLVPEVVSYGEYQSKKRVAGIINAIMGLFFKIGLALGGIIPGYI NAFFHFDGTKAVQNSSSLMGIQWSMIWIPIGLAVVAMWIMSRYPLSDLDVKQINLEIDQR KTQGEL >gi|269838509|gb|ACXB01000002.1| GENE 164 175929 - 177545 1146 538 aa, chain + ## HITS:1 COG:L0234 KEGG:ns NR:ns ## COG: L0234 COG3507 # Protein_GI_number: 15673487 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-xylosidase # Organism: Lactococcus lactis # 3 537 4 538 559 868 78.0 0 MKIVNPVLPGFNADPSMIRVGDTYYIANSTFEWFPGVRLHESKDMVHWQLLPSPLSTTTL LDMKGNPASGGIWAPDLSYADGKFWLVYTDVKVTEGAFKDMTNYLTTATDIRGPWSDPIK LNGVGFDASLFHDQDGRKYLVQQTWDHREYHHPFDGITLTELDVTTMKLKPETARTIYRG TEVKLVEGPHLYQKDGYYYLFAAEGGTVFTHQEVVARSKTLDANSFETEPDGPFITNFDT PDMEIQKQGHGALVNTPSGEWYYASLCARPWNHTNESRHDPRGWSTLGRETAIQKVEWDD QGWPRIVGGHGGQVEVEAPKDAILSAGSADHSRHDEFDQPALDLDWNTLRVPFTAKMGHT GKGYLELVGRGSLASNFDVSMIAQRWQAFNFTAETKVKFDPFSYQQMAGLTNFYNDKHWS WVFITRDESRGKVIEVAENNHGNYTSYLKDHAVKLPDDIDEVWLRTQVEKQIYYYEYSFD GQEWHRIPVELDAAVLSDDYVLQTYGGFFTGAFVGLAAVDYSGYEVPAQFGYFDYQEK >gi|269838509|gb|ACXB01000002.1| GENE 165 177776 - 177988 260 70 aa, chain + ## HITS:1 COG:no KEGG:PEPE_1749 NR:ns ## KEGG: PEPE_1749 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 70 1 70 70 84 78.0 1e-15 MAETLKTQLLDKQMKEVFDWSDDSTPVRDAMWNHVMDSNGHNTVKTIAEAKKWESMSDAD LKKTAEDMLK >gi|269838509|gb|ACXB01000002.1| GENE 166 178434 - 179636 1045 400 aa, chain + ## HITS:1 COG:aq_689_2 KEGG:ns NR:ns ## COG: aq_689_2 COG2199 # Protein_GI_number: 15606095 # Func_class: T Signal transduction mechanisms # Function: FOG: GGDEF domain # Organism: Aquifex aeolicus # 213 385 2 170 176 105 31.0 2e-22 MPFSMVVSPIGQWFARFFSFNTLIIAAITIGVLCILTLVSYGIDRFFSRYETNTVVYEEI SWFVSLAIAMLFLQATFVALHADIDSSQLGWQYSNAQFIILFYCLYIVHRKTVLWFNMGL PIYIYGLAIIRHQTQFNILNLLAMLLLIAVIWVIYRNSDWLIDSAWYYGTQFLFGVAWWS ILKGIRTMTVSQVLLLTFEFMMMMTIVHFGNIEIRAMVKRYMKLEKDNGYDFLTGVRNRR TFNEVVNEVFEVYSNNDLPVAMVMFDIDHFKLFNDQYGHQVGDNVLKYVAQLFSDELFER KTNAQLFRVGGEEFTIIFRNRTSAEAAPIVKTIRDILVKKTFEVKDDLNVRVTVSIGVTD LKKSDQSAKDFYKRVDKYLYQAKNNSRNSMSVEGDVSSLS >gi|269838509|gb|ACXB01000002.1| GENE 167 179648 - 180376 590 242 aa, chain + ## HITS:1 COG:lin0158 KEGG:ns NR:ns ## COG: lin0158 COG2200 # Protein_GI_number: 16799235 # Func_class: T Signal transduction mechanisms # Function: FOG: EAL domain # Organism: Listeria innocua # 9 236 1 229 232 117 30.0 2e-26 MAELEAAVVKLCFYEQPIFAVDNEDTEGKLQEYELLLREAGEDNKFPAALFKEYIRNNES NRIFCNWMANELKELVKNKPNQYFSFNIDPQQLLYPSTIEALKALIPYQKTLMVEITEAI PSKRYFDQYYNNSMIEPIKQVHDLGFRIAIDDVSSGMNSFNIVREYGKYIDRIKLSLLQL RNVSKDLVQETVMLWRSMAIDNQIDLIIEGIDNLSVSDWLVDNSIKLQQGYYWGRPQAIE KN >gi|269838509|gb|ACXB01000002.1| GENE 168 180544 - 181386 834 280 aa, chain - ## HITS:1 COG:L29875 KEGG:ns NR:ns ## COG: L29875 COG0702 # Protein_GI_number: 15674152 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Predicted nucleoside-diphosphate-sugar epimerases # Organism: Lactococcus lactis # 1 280 1 280 281 189 40.0 3e-48 MNIMVTGATGEYGNYALQYLEKVMPKSNLYALVRNPQNATKIEQMGINVRISDYANLDSL LSAFHGIDRLLFVSTSIPKIQKNVVDAAKVNGITYIAYTSIYRPELNKFGLELNHRQTEK WIEESGIRHTFLRNDWYLEVNQAMFNLAAQTQQFPLLNKSGILSYALKREYAEAGAKIIL ADNYGPVANLAGKPFTYQQLAEATESALGQKLNIQSVSKDQFNSIMRQAKISPQFQQAVA LYQEYSLDPQNGAAEANSSEFENILGHPLTSLPNAIKSLL >gi|269838509|gb|ACXB01000002.1| GENE 169 181649 - 182233 310 194 aa, chain + ## HITS:1 COG:no KEGG:Shel_04470 NR:ns ## KEGG: Shel_04470 # Name: not_defined # Def: transcriptional regulator, TetR family # Organism: S.heliotrinireducens # Pathway: not_defined # 3 180 2 180 189 143 43.0 4e-33 MTLKNQTKLLFAKKIEEMLESMSLEQVRIVELCKRAGTIPQTFYYHFRDKYELVAWIFLY DFSVVYGDRSPNYTKNRIIENLKQIEKRRTFYLKAYMDQSQNSINRYIQNFNVQIAITAV KNSRDGEEPTEMEINQIKYHSYGMMGLFAEWLAGTSKLTIEKLAEFQYECTPDFLKQAYK EHPFQRSKLFKEDF >gi|269838509|gb|ACXB01000002.1| GENE 170 182353 - 182757 183 134 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNKLTTIALSLLVIIFSFFTIQDLLVASPVVKDGITAAIFLVLAILSFEDNSTGQIDSVH ENHLNHLSDHKTLVFIEWFSFCMFWIFISIYQLVNSNLIIGVIAFTCLCYWTIINITKIV IYLFLLKNDATSHK >gi|269838509|gb|ACXB01000002.1| GENE 171 182850 - 184268 1659 472 aa, chain - ## HITS:1 COG:L324 KEGG:ns NR:ns ## COG: L324 COG4690 # Protein_GI_number: 15673540 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidase # Organism: Lactococcus lactis # 5 469 10 473 474 359 42.0 6e-99 MTEKACTTVLVGKKASIDGSTMVARNDDTFLPLAPHRFYMHPAESGVDETIVSSQNGFTA KLPANGYRHSAVPNIDPDRDGIYDESGFNEKNVAMSATESVYGNPKTLAYDPLVPNGLAE DTMPTMVLPYIDSARMGVEYLGKLIAKYGSPEGNGVIFSDKDDVWYMEIVTGHHWVAQRI PDDSYAVAANQVAIQQVDFNDPDNFMWSEGIQEFVEKYHLNPDHEGWNFRHIFGTDTEKD RHYNTPRVWYGQLYLNPEIEQDPQSSELPFIRQASRKITVEDVGNILSSHYNETKYDPFG HGDDKDRLKFRPISMNRTQNSHVLQIRNDVPEDRSAIFWLNFGVPAFSPYVPFFNNATDT DPSYSATKQTMNLDDAYWMYRAVGSVVEGHYSQFIQKNVDYVTASKEFLRGRVAEIDRQA AELSGEELTKFLTEANHQTVAAMKERTMKHFNDLLATGLTLSKLTFNMDKNL >gi|269838509|gb|ACXB01000002.1| GENE 172 184385 - 184993 403 202 aa, chain + ## HITS:1 COG:SA0565 KEGG:ns NR:ns ## COG: SA0565 COG2231 # Protein_GI_number: 15926286 # Func_class: L Replication, recombination and repair # Function: Uncharacterized protein related to Endonuclease III # Organism: Staphylococcus aureus N315 # 6 192 7 191 211 130 39.0 1e-30 MQVKTIYQTMYARMGKQPWLEEWQETPWEVVYGGILVQNTSWRNVVPSLNNLKLNFNFNP KLILELSDEELQQNVRPSGFYTRKAAAIKNILQWAKGYDFSVSRIQNLTSSQLRAELLAL HGIGPETADYVMMYAFEHAGFIADKYSRRLFERMGCPLPKGYEATKKMVEKELDLTSEQW KNFHAMIVNDGKKRVEENGHYV >gi|269838509|gb|ACXB01000002.1| GENE 173 185082 - 186887 1527 601 aa, chain - ## HITS:1 COG:CAC0227 KEGG:ns NR:ns ## COG: CAC0227 COG0577 # Protein_GI_number: 15893519 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Clostridium acetobutylicum # 2 592 3 628 634 132 22.0 1e-30 MLLRLALSNIKNHLRDYVVLLTGLVMSSAIFYMFANLATNEGFIKANATFKYASPVFIFG EVLLVIITFVYVMYANSFLLNMRLHDYGLFMMLGAKKRRVGSLMVFETMTVGIIATVLGL LLGVGLTGGISQLLFHRFGLEIHNFNPIYFKAILVTVLLYLILFFIAALFNLQSLVRKPV LKLLKQTDTVDRIKINPIGLLFSGVAGIVLVGIGYYALAKIVDLQLSAIPIALVTIVVGS FLIFRSSMTLIIHWLKNSGFAQRKLNTFTLSQIMFRIRDYNKILTITSLLFALALGAITV GAAFNREIDSTAQLQSSFTLALNNPTAKEKRLVKQLKNAEVVSYDQKFANSHVYYNEDQF EQHPFYTIKYNPSTDHPADAKRVKISLSDLKNNASRSIDFIGLGGSKIDTTPQFYSTSEF NQLNGEKGTVSVITVKDIGINRDVLQKLNDLQTKAHPQPEEFTMGVGAFKAYLLASGIYG GLEFIGYFLGIAFLAMLASCLMFKILSGTRQDTVRYNLLNKIGTRRSLMKKSINREIFIL FALPGILGIIDVWFGLQMFKPLLHDPYYNIQYLTIFFVVVYLAYYLLTTWIYKLIVLPKK K >gi|269838509|gb|ACXB01000002.1| GENE 174 186900 - 187622 326 240 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 194 7 199 223 130 37 1e-28 AENLWGKNERQYEALKGINFDVQTGEFVGIMGASGSGKTTLLNMLATLDKPTSGQVLINQ QDVTRLKGNQIADFRSKEIGFIFQDFNLLETLTAEENIALPLSLQGVRRSAIKQAVHAVA ETLSIQDLLRKYPTELSGGQKQRVAAARAIVHQPALLLGDEPTGALDSNSAREMLELLTD INQKQGVSVLLVTHDPFSASFCQRILFIKDGVIGQELRRNGTSRSEFYQEILEKLGTFEQ >gi|269838509|gb|ACXB01000002.1| GENE 175 187824 - 188114 340 96 aa, chain + ## HITS:1 COG:no KEGG:PEPE_1742 NR:ns ## KEGG: PEPE_1742 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 95 1 95 96 85 71.0 4e-16 MTHTVGIILTMLYGGFLIYSALRIEAQVETWIMAANIIVGALMLLNFIQPWLGIAGLILV LPVSLVNGQLIFFNINWPHFVVRVIVTILLVVSLLA >gi|269838509|gb|ACXB01000002.1| GENE 176 188111 - 188674 633 187 aa, chain - ## HITS:1 COG:FN0535 KEGG:ns NR:ns ## COG: FN0535 COG1611 # Protein_GI_number: 19703870 # Func_class: R General function prediction only # Function: Predicted Rossmann fold nucleotide-binding protein # Organism: Fusobacterium nucleatum # 2 187 4 189 192 186 46.0 2e-47 MKKIAVFCGAAEGESPRYTAAAQQLGKYLANHQMGLVYGGGKYGLMGQIATAVLESGGYV EGIIPQNLADRGASYSAISKLEVVENMPVRKQRMMELADGFVALPGGPGTLEEIAEVYSW SLIGENAKPCALYNVAHYYDALQEFYDRMVKNGFLAKPAREKLLFSDSLDEIFQFINSYT PPTIRQY >gi|269838509|gb|ACXB01000002.1| GENE 177 188979 - 190904 1431 641 aa, chain + ## HITS:1 COG:L158566 KEGG:ns NR:ns ## COG: L158566 COG1835 # Protein_GI_number: 15674089 # Func_class: I Lipid transport and metabolism # Function: Predicted acyltransferases # Organism: Lactococcus lactis # 17 636 2 600 605 406 38.0 1e-113 MKEFDEVSLEYKNTGARRYITGFDGLRVLALLGVIFYHLMPYKVPGGYLGVPIFFTVSGY LITDIFIQEWDRTGKIKLGAFYLRRLRRLYPTLVVVLVASTAYMTIFAHNLLSHIRSIIL TNLTFVYNWWLVGHGQSYFDRYNGESPFTHLWYLSVLGQYYFIWPLLLIVLLKIYTHRRV QVAGILFSLSVISAMIMAILYHPDTVNRVYYGTDTRVAPFLIGAALAFIWPSTRLKKNLD LHKNAVANIIGLIIMALMITSFFTMPGTSVWPYYGGIFIFSVLSVLMIAIIAHPAFIWNR ALTNPVFKWLGSRSYGIYMYQLPVMVFYEQKVTNIAAHPVLNTIAPLVIILVLSELSYRF VEIPLAQFDYRHLGRFLKEMFDIESGFKWRHVGVAAVLFVTFVAIFGAVTAPEKVSQKTD DLQAKLAKNSKATDRKNAVALKKQKEAQKDHAKSKDKHVKLTKKEKAIAQKYHLTDQEMG AAKSIPLTGVGDSVLEDTGADLQEIFPTAFMSAKVGRQVDEAPGLLTSMKKQGQLSDNVL INLGANGPVNAKQIDAIEKVVGKHRKLFWVNVHVPTQTWEGSVNQTLNKATKKYDNLQII DWNGPAKNQPGWFYGDHVHPNPEGSKEYASLVAKAIIKAVQ >gi|269838509|gb|ACXB01000002.1| GENE 178 191221 - 191943 402 240 aa, chain - ## HITS:1 COG:no KEGG:PEPE_1739 NR:ns ## KEGG: PEPE_1739 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 239 1 240 242 343 72.0 2e-93 MKIQDARRRFFWLTISIIINSAANALTIATGMGSAVWTASAVNIAHWVTHSTDPAVANHV MGTVLVIYGVAVAFLAMLLTQRMDWTRFVRNILFVVPFSYLVQWFVPLFRDFLRIGELQA NFSHPYQLALDIIIDIFGLFWVATAVSLYQRANLIMHPNDDLSYILRFKYLHGRASASQW ASYVPPLVMTVLSLIANHQVWSFGFGTVWAFVTQGYVQGWADEHVAPSFKHHFVLQKPRG >gi|269838509|gb|ACXB01000002.1| GENE 179 191966 - 192175 235 69 aa, chain - ## HITS:1 COG:no KEGG:PEPE_1738 NR:ns ## KEGG: PEPE_1738 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 4 66 3 65 69 82 61.0 4e-15 MTKEHYLNKRRQQELLPLVAFEITATFLAYKDILTASSFRHGNRTLWLLVALIQPIGPWL YFTFGQKSE >gi|269838509|gb|ACXB01000002.1| GENE 180 192240 - 192869 231 209 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|223039927|ref|ZP_03610210.1| ribosomal protein L22 [Campylobacter rectus RM3267] # 9 204 9 195 208 93 30 1e-17 MEDFMEQQITQFINDFGYLAIVLLIALENLLPPIPSEIILTFTGFMTLTSKLTLWGSVIA ATVGAVIGALLLYVIGRYLNPERLHWLVASRLGRGLRLKDSDITKAQSFFQRHGFKTIFF GRFVPVIRSLISIPAGMAKMPGLLFVLLTTVATLIWNLVLILLGRAAGSAWAEVSAMVDT YASVVAILLAGILLIGGLVYYFKRIRTKA >gi|269838509|gb|ACXB01000002.1| GENE 181 193051 - 193932 245 293 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 22 289 21 305 311 99 27 2e-19 MKNTTLVEVHELKFNYSSKMVLRGVNLTIPTGEIIGLIGENGAGKTTLLKLLLGILHSQS GAIQWNKVAKPEVNTMFQNNLKLVGVTVRDLLQLTAAQYRNPRPVADVMEELALSSFAKR PLSRLSGGQLRKVAFGLTLVSNAQLLFLDEPTVGMDVNARQIFWRKIEQMRVQGKTVLIT SHYLAEIQEVADRILILKAGKIKFNGTLAELQRGYLTSQISFVTNLPKARFQGLSNVKQV LVKGQQVTLDTTDSDQTLRALAPWLNQLNNVKITAASLENIFTAMTKEDDRHE >gi|269838509|gb|ACXB01000002.1| GENE 182 193925 - 194683 457 252 aa, chain + ## HITS:1 COG:BS_yvfS KEGG:ns NR:ns ## COG: BS_yvfS COG0842 # Protein_GI_number: 16080461 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Bacillus subtilis # 1 236 1 235 245 102 26.0 5e-22 MNKLWEQLKFDGKRLVFRNPSFLIMSLGMPAFFYWLFTKLFTNPATNNREFAGSYLGSMM VYSLLITLLMGMSTALIRDRNEGLTVFLKLNHHRLDNYYASFLLWNTLKNFMAMGILGTV AAYLNAITLDPVQWLTLLGLILVGQIPIMLLAGLLANVKRQETLGMLMNLVTFPLAIVSG LWWPLEAMPEWVQNIGRHLPTYFLNRTIGQVINHAKINWSSVVGISEWILIMALVTAGVA QLFTKRSSAINA >gi|269838509|gb|ACXB01000002.1| GENE 183 194676 - 195776 664 366 aa, chain + ## HITS:1 COG:BS_yvfT KEGG:ns NR:ns ## COG: BS_yvfT COG4585 # Protein_GI_number: 16080460 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Bacillus subtilis # 140 359 99 317 328 121 32.0 2e-27 MRSFKETLKKIKWETYIWLMYLPFSAAFYLPARSWTDYFWLLMMGAFLIVYILVTEVPKW RRVTIPLELLITGSFAVLSFNFYMIIFTAWQVAFILSTMPRRYFGWFLISYYVFLGLGII RSVQTNPIAGVEYTINALGLIFPVLSPIMSYGFARSVQIRKQMSQNNRRLENLIRRGERD RIARDLHDTLGQSFSMITVKTELAQKLLEKAPERVPDELRDIAKTSRANLQLVRQIVADL HQQTLSEVLLEQGKNLAQARIFMFTEHEEAASKWPTEVQNCIAAVIVEAVTNVIRHSRAS QVWIKFNQVGENYHLEVQDNGHAKRLTRENANGITGMLQRVREQNGEFQIFSNSIGTLVQ VHLSKE >gi|269838509|gb|ACXB01000002.1| GENE 184 195780 - 196283 620 167 aa, chain + ## HITS:1 COG:BS_yocG KEGG:ns NR:ns ## COG: BS_yocG COG2197 # Protein_GI_number: 16078980 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Bacillus subtilis # 1 165 1 162 199 158 53.0 4e-39 MITLFLAEDQSMLNSALSQLLDLEDNLKVVGTASDGQMAWEMIQKQSPDVAILDIEMPRI TGLAVAQRIHEEKLPTRVVILTTFARQTYFEQAVQAQVAAYLLKDSPSEELIGAINQVMT GKTIYDPALVQSVLSAEQSPLTKRETEVLKVAASGMPTKEIAQQLFE >gi|269838509|gb|ACXB01000002.1| GENE 185 196580 - 198052 1279 490 aa, chain - ## HITS:1 COG:BS_yfjO KEGG:ns NR:ns ## COG: BS_yfjO COG2265 # Protein_GI_number: 16077869 # Func_class: J Translation, ribosomal structure and biogenesis # Function: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase # Organism: Bacillus subtilis # 36 490 11 465 466 452 48.0 1e-127 MNNKKNFKTSKSRSQSRTNSKQNNRHYYHNPKSAQQIAEGQVIPLKIKRLGINGEGIGYY QRTICFIKGALPGEKVLATITEVHPRYLTGVLHQIKKASPDRVTPIDAYADEVGGFELEH FAYPAQLEFKRDVIRQALTKFRPAGYQDYELRPTIGMDDPVAYRNKAQFQIRRLADGRIG AGLYKEGTHELVDLATCSVQHPLTMKIIRAAVALFTKYDVDIYDEHHNEGELKTLVVRVA QATQETQVVFITNTPQLSHATEIIDELSTQFPEIVSFMQNINPGRQSLIWGDQTVKLRGQ DTIREELDGLSFNLSARAFFQLNPQQTVTLYDEARKALSITPNSRIVDAYSGVGTIGLSL ASEAKEIRGMDTIADAITDANENARLNSITNARYEVGSAEKLLPKWLKEGFQPDGIVVDP PRVGLDRRLIDAILKSAPKHFAYVSCNPSTLARDLVPLVKKYRVEYIQSIDMFPQTARVE AVVKLTLRNA >gi|269838509|gb|ACXB01000002.1| GENE 186 198259 - 198795 562 178 aa, chain + ## HITS:1 COG:no KEGG:PEPE_1730 NR:ns ## KEGG: PEPE_1730 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 178 1 175 175 223 76.0 2e-57 MAKDIEADEYATGSDVVEKIERIGSLATLGNWAKEMERSGHKFQHDGRGRRIYSEEDIQI LEKMNELLGEKNTLKQAVQATLGVSSSSDEDDEEVEDEQDQVEGDSVPMVMDESMKRFIT AQSQDMADLKKLLTKVVEQNQSYHEENAKLAKKIDDLVEKNQKALEQPKKGWWKRHFG >gi|269838509|gb|ACXB01000002.1| GENE 187 199002 - 199562 417 186 aa, chain - ## HITS:1 COG:lin0412_2 KEGG:ns NR:ns ## COG: lin0412_2 COG0791 # Protein_GI_number: 16799489 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell wall-associated hydrolases (invasion-associated proteins) # Organism: Listeria innocua # 52 182 1 128 132 116 42.0 3e-26 MNYRSILFTTAIATMGAFSLGHSPVSAHSLPANSPLLTASISETPQPKVSQSFSAASAAP AAFNQLETVLNQHLGQPFAWGATGPTAFDCSGLTQFAFRQALGLNLNRTAEQQFQQAQRI DATAVRPGDLVFFSYNHGQTIDHVGIVVNGNHLMIDAQNRGVIRESYATPWWQPFIAGYG RVLTNQ >gi|269838509|gb|ACXB01000002.1| GENE 188 199649 - 202000 2095 783 aa, chain + ## HITS:1 COG:lin0195 KEGG:ns NR:ns ## COG: lin0195 COG1199 # Protein_GI_number: 16799272 # Func_class: K Transcription; L Replication, recombination and repair # Function: Rad3-related DNA helicases # Organism: Listeria innocua # 1 782 1 777 779 669 43.0 0 MVPTKIGIRQLVEFILRSGDLNPTANSQNTALKGAQIHRRLQKKRGADYEKEYAVKRVVE VAGTELTVEGRADGVVIGDELFIEEIKTSDPTYDELSENTKTLYWSQAKVYGAILSQDLD YEQVTIQLTYYQRPTDDVLEQQQTFSRQELSEFFDELINEYQEWVRRQRDWRSVRNQSAQ KLAFPFSEYRAGQRELAVAVYKTILTEQRLFVEAPTGTGKTISTLFPSIKAIGEAKMERI FYLTAKQSTQHVAEEALELMAEGGLKLKSITLTAKDKIIFPEEVGVNPENNPYMLGYYDR VKDGIQDVLDHENQLTKEVIQKYAKKHTLDPFEFSLDLSLFCDLIIGDYNYLFDPRVYLQ RYFSNVDKGNFFLIDEAHNLVSRSREMYSAEINTDQVVKAQELFETSGHDVDSSTVKRWL NRLGNELTIIQNTFEKENKEALVDYQPLGPLENVMLKFNEAVREWLPKQPDGDLTDQILS VFFACSVYLKIAEYYDESYRIIIKKTEVGINVQEQILDPSPYLDASLKKGRGAVFFSATL SPVDYYQETLGSSDALSLRMDSPFEQRQQNILITDYIDTRFANREESLPQIVASIDMLVS AKAGNYLIFCPSYAYLDQIASAFRVLRPEVQVEQQNNQMSPEDRTAFLDKFRTPSATTLV GFAVLGGIFSEGIDLTDEQLIGVGIVSVGLPGLNVERNLLRDYFDEKNGHGFEYAYQLPG MNHVLQAAGRLIRTKRDRGNVVLMDQRFAGYRYLKLFPKHWSNYRQISSIFDLKKAVNGF WQR >gi|269838509|gb|ACXB01000002.1| GENE 189 202165 - 203436 1604 423 aa, chain + ## HITS:1 COG:SA0600 KEGG:ns NR:ns ## COG: SA0600 COG1972 # Protein_GI_number: 15926322 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside permease # Organism: Staphylococcus aureus N315 # 1 423 1 409 409 381 51.0 1e-105 MYLAVNVIGIIVFLGVAVLFSKDRKHIDWKSVGIMVVINIVLAWFLVNSTVGINAVKAAA DGFKGLVDISYKGISFALADWVDVKQMNFVTSALLPILMIVPLFDILTYIGVLPWIIKWV GKGLSFITRQPKFESFFAVEMMFLGNTEALAVSGLQLRQMKSARLVTIAMMSMSCVTASI LGSYLLMMPGQYIIAAVPINIINAIIVTTVLNPVSVTEEEDTIAKIGSSADTGATTETIE SGSEEVAEETVAKKPAREPFFSFLGDSILGAGRLILIITANVIAFVALAALIDALLGKIN PALSLENILGVIMFPFAWLLGFDPSHAFQMAQYMGTKLVTNEFVVMGKVSPILKHFTPHF LATLTVFLTSFANFSTTGMIIGAFKGLVDREKNDVISKNVGYMLLSGILVSLLSAGFIGV FVW >gi|269838509|gb|ACXB01000002.1| GENE 190 203367 - 203546 56 59 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLSFNYLPRFYESVLITILKKDELRVHLFSFFSFELVYQTNTPMNPADSKETKIPESNM >gi|269838509|gb|ACXB01000002.1| GENE 191 203537 - 204451 1124 304 aa, chain + ## HITS:1 COG:STM0051 KEGG:ns NR:ns ## COG: STM0051 COG1957 # Protein_GI_number: 16763441 # Func_class: F Nucleotide transport and metabolism # Function: Inosine-uridine nucleoside N-ribohydrolase # Organism: Salmonella typhimurium LT2 # 5 299 7 301 306 252 46.0 5e-67 MTTKIIMDTDPGIDDAAAISVAINNPEIELELITTVAGNVTVDKTTKNALKLVKFFNADV PVASGAEQPLLKPFEDAARVHGESGMPGYDFGEEPAEVPANNAVEVLYQTIMANDDPITL VPTGSYTNIALLLKEHPDVKGKIKKIVAMGGAIGMGNMTSAAEFNVFTDPHAAEIVYQSG IPVVMVGLDVTMKALLTPETIATIKTLGKPGEMLGAIFTHYYEGNEGGIPMHDVNTLAYI LNPEMYQTEAYWVDVVTEGPAIGETVADIRGAYHDGKTNAEVCVDIDAAAFNKWFIAEVK KMRA >gi|269838509|gb|ACXB01000002.1| GENE 192 204554 - 205027 424 157 aa, chain - ## HITS:1 COG:BS_yvbK KEGG:ns NR:ns ## COG: BS_yvbK COG0454 # Protein_GI_number: 16080442 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Bacillus subtilis # 16 154 19 155 155 99 40.0 3e-21 MQPTIRPVSAFTPQHYDLLLLADPSLKSIASYLSRSTAFEMVADQRLIGLVVVRPLTNQT AEIMNLAITPKFQRQHFASRLLEFVIEHAPKTGIQNLRIMTGSTSFTQLYLYQKLGFRCV KVLTDHFVNSAYYPEPIYENNLRLRDAIVLERDLLSD >gi|269838509|gb|ACXB01000002.1| GENE 193 205135 - 205866 664 243 aa, chain + ## HITS:1 COG:lin2934 KEGG:ns NR:ns ## COG: lin2934 COG0357 # Protein_GI_number: 16801993 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division # Organism: Listeria innocua # 1 240 1 237 238 295 64.0 5e-80 MNPEEFRQALAERGRTVSDHQMWQFDTYYKRLVETNEHVNLTAITDEKEVYLKHFYDSVT PLLEAPQFFTPGIALCDVGAGAGFPSLPMKILLPELKVTIVDSLNKRIKFLQALVDELGL TDVELVHDRAETFGAKKSAYRASFALVTARAVARLSVLSELCLPLVKQGGHFIALKAAHT EQELAIGRQAIAVLGGKLLEDRQFALPVTGDERHLVVIEKKKETPNKYPRKPGTPSKDPI GEK >gi|269838509|gb|ACXB01000002.1| GENE 194 205876 - 206727 677 283 aa, chain + ## HITS:1 COG:lin2922 KEGG:ns NR:ns ## COG: lin2922 COG1475 # Protein_GI_number: 16801981 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 17 283 22 281 283 221 47.0 9e-58 MNEKQLEIQLNVPENASYQMVEVDKIRPNPFQPRRIFDKKKLAELADSIRESGIFQPLVL RQPIAAIERYEIIAGERRYRASIIAGLTKVPAIIRDFSDETTREAAIVENLQREDLSPLE EAEAYQAMIKELGLTQAQVSERLGKSRPYIANYLRLLGLPTSVKELLQSGKISMGQARTL LAVKQERQLEKLAQRTVQEGLTVRQLESIVNQINATKAPKAESKTAQQRKSPFIREIENQ LAERLGTKTLVVAHSKQKGKIEINYESMSDLNRILELLHISLD >gi|269838509|gb|ACXB01000002.1| GENE 195 206741 - 206941 309 66 aa, chain + ## HITS:1 COG:BH4052 KEGG:ns NR:ns ## COG: BH4052 COG4481 # Protein_GI_number: 15616614 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 2 57 4 59 65 77 67.0 6e-15 MEYDLHNVVQMKKNHACGTNRWEIIRLGMDIKMKCLGCRHIVMLKRREFEQKLKKVIAEM PDEDER >gi|269838509|gb|ACXB01000002.1| GENE 196 207357 - 208463 1448 368 aa, chain + ## HITS:1 COG:L0161 KEGG:ns NR:ns ## COG: L0161 COG0012 # Protein_GI_number: 15671988 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted GTPase, probable translation factor # Organism: Lactococcus lactis # 1 368 1 371 371 471 68.0 1e-132 MSLTAGIVGLPNVGKSTLFNAITKAGAEMANYPFATIDPNVGMVEVPDARLARIQEIIPA KKIVHTTFEFTDIAGIVKGASKGEGLGNKFLENIRQVDAIVHVVRAFDDDNITTVSGKVD PIEDIETINMELSLADLESVEKRLAKVQRAAKGRDKDALAELAVLEKLHPVLEAGKPARA VEFDEAEMPIVKGLFLLTTKPVLYVANIAEDDMADPESSKYFKEIKDYVAEVDPDAQVLG ISAETEQEIAELEDDEKAEFLEAEGIEEPGLNRLIQASYNLLGLQTFFTAGGKETRAWTF KKGMTAPQTAGIIHSDFERGFIRAETVSFDDLDKYGSMQAVREAGRLRLEGKDYHVQDGD IIEFRFNV >gi|269838509|gb|ACXB01000002.1| GENE 197 208490 - 209188 708 232 aa, chain + ## HITS:1 COG:SPy1828 KEGG:ns NR:ns ## COG: SPy1828 COG4858 # Protein_GI_number: 15675655 # Func_class: S Function unknown # Function: Uncharacterized membrane-bound protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 24 227 5 209 218 103 32.0 3e-22 MSEEPRNAGAQQRHPHPEHQQSTELTKRNADFMHRLRKELQASKLSDEQRQAALIDTETQ LLEGQKTGTTAKQLFGTPTDRFKAIVEGPKKAKMEAQSNNIWLRAADNGLIFMALFAAMY ALMMLIQPKSVQAAPGPAGILAIILTSAVGGFGIAYIYRLIGNRKKRPSLWKQAGITVLA VILWIIFYTAFGALPPVINPMLPLAGYIVLAVAAFAGRWYLRRKFHIVGGLL >gi|269838509|gb|ACXB01000002.1| GENE 198 209215 - 210357 1152 380 aa, chain + ## HITS:1 COG:SPy2206_3 KEGG:ns NR:ns ## COG: SPy2206_3 COG0516 # Protein_GI_number: 15675939 # Func_class: F Nucleotide transport and metabolism # Function: IMP dehydrogenase/GMP reductase # Organism: Streptococcus pyogenes M1 GAS # 101 378 6 283 286 404 78.0 1e-112 MSNWNNKFTKQGLTFDDVLLIPGESHVLPNEADITTQLADNLKLNIPIISAGMDTVTESA MGIAMARQGGLGVIHKNMSADQQAAEVRKVKTADVDFDDNPKAAVDDQDRLLIAAAVGVT SDTFERAEALIEAGVDAIVIDTAHGHSAGVLRKIAEIREHFPDQTLIAGNVATAEGTRAL FEAGVDVVKVGIGPGSICTTRVVAGVGVPQITAIYDAAGVAREYGKQIIADGGIKFSGDI VKALVAGGNAVMLGSMLSGTDETPGSIIEDGGKKYKAYRGMGSVGAMEKGSADRYFQGGV NEANKLVPEGIEARVEYKGSVAAIIFQMLGGLRSGMGYVGAATIPDLAEKAQFIQITNAG LVESHPHDVQMTKLAPNYHK >gi|269838509|gb|ACXB01000002.1| GENE 199 210602 - 211096 371 164 aa, chain + ## HITS:1 COG:BS_adaB KEGG:ns NR:ns ## COG: BS_adaB COG0350 # Protein_GI_number: 16077250 # Func_class: L Replication, recombination and repair # Function: Methylated DNA-protein cysteine methyltransferase # Organism: Bacillus subtilis # 3 160 8 168 179 129 40.0 2e-30 MEIYYTSLTSGTARYYLGSTAAGLAFVGTPNAELTEIYQFYSTATLIQDETANLPAKQQL AEYLQGTRRQFDLSLDMENGTDLQRSVWQALLKIPRGTTLSYSELAQQIDRPGAVRAVAT AVARNPLLIVVPCHRVTLKSGQLGQYRGGSPIKQRLLKLEGACL >gi|269838509|gb|ACXB01000002.1| GENE 200 211213 - 211902 806 229 aa, chain + ## HITS:1 COG:lin2516 KEGG:ns NR:ns ## COG: lin2516 COG0745 # Protein_GI_number: 16801578 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Listeria innocua # 3 226 5 229 231 222 53.0 4e-58 MKILVVDDDKEIVELLDIYIKNEGYEPVSAYNGKEALTKLHTDPDIKLMILDIMMPEMDG MQVVREVRKDSELPILMLSAKTDDMDKIKGLLTGADDYVTKPFNPLEIMARVKSLLRRSE KDVTDDAPEILDIGPLTINSDSHEVKTLAGKAVQLTALEFGILYLLASHPNRVFSADEIF ERVWQQESVISAKTVMVHVSHLRDKIEEATGGEKVIETVWGVGYKVVAH >gi|269838509|gb|ACXB01000002.1| GENE 201 211922 - 213070 923 382 aa, chain + ## HITS:1 COG:lin2515 KEGG:ns NR:ns ## COG: lin2515 COG0642 # Protein_GI_number: 16801577 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 68 369 88 379 380 187 36.0 4e-47 MKLTGREKYELFGEGIITIILLLLLNLSVFILIDGALKTNPALSNAIFLVKNSIRIGGIQ IWSYQNIFIAIMFLADLGVLYWRLERRYKQMQLRHIIAELHYIANGHFDHRIPFELSGDH QRVVDSVNSLVDSVISSMEEERALKQSKDDLITNVSHDLRTPLTSIIGYLRLIEDHQYQS TDDILKYTHTAYLKSVQMKSLVEDLFEYTKVSQSNPKLNYNKIHVDSMLQQLAASFELEA KQKGFVITSTCVPEDLEMMGDAEKIGRVFNNLITNALKYGAGGKHIYLNAHQINDTVIFE VANDGQKVPAQALGKLFDRFYRVEESRSKATGGTGLGLAIAQSIVEMHNGTIEAHSNDKR TSFIIQLPLKQPVRGAQPTSKY >gi|269838509|gb|ACXB01000002.1| GENE 202 213382 - 214629 919 415 aa, chain + ## HITS:1 COG:SPy0292 KEGG:ns NR:ns ## COG: SPy0292 COG1686 # Protein_GI_number: 15674465 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanyl-D-alanine carboxypeptidase # Organism: Streptococcus pyogenes M1 GAS # 24 378 16 369 410 205 37.0 1e-52 MKKVLLVIATLLLFATGVTPAAAATQTSSLVNPEITAKSALAIDSETGQVLYEKHADQVL PIASMSKVLSAYLIMKSVQSGKMRWDQPVKINADIAKISENSELTNVPLTAGKAYTVKNL LDASLIYSANAAIIALGKAQAGSSRKFVDEMRATVRSWGIKDAKLYNAAGLLENQVGAEK YPNSPKNAENQMSANDMAVVIQHVLKEFPEILQITKIQKLDFDTGSGKVTMINHNELLPG GAQYDHQYQLDGLKTGTSLAAGEDFVATGKVNQRRIISVVLGAKTDHRFTDTKAIWQALM TNLTVVKTNLKNQASVVMDSAKQRQVKLQLAQPLAYWKAKKGGQMPKLDQVKLKSAKTKA PVDKNQVIATGRLAGASLSFLPNKSTRKVQLKPVHDVQKASWWVRLGRTISGWFH >gi|269838509|gb|ACXB01000002.1| GENE 203 214847 - 215635 770 262 aa, chain + ## HITS:1 COG:lin1480 KEGG:ns NR:ns ## COG: lin1480 COG1296 # Protein_GI_number: 16800548 # Func_class: E Amino acid transport and metabolism # Function: Predicted branched-chain amino acid permease (azaleucine resistance) # Organism: Listeria innocua # 5 227 4 233 235 80 26.0 3e-15 MEQVETKARWKETFKVAWPLCLSYTPIGLACGILLHAAGFNTLLTGLVSLVIFSGGAQFL IAQMLTVNAPILTIVLMLFFLELRYALLGSSLSKYLQGESHTSIFTFALSLNDENYAVNY LKFATDKNWTPNDARQVEHWSLLFWTVANVIGSLIGSVLKINLTVVDFALTALFIYMIVM QVKSRLSLVICIFSGVLAAVCMIVTKSTLGLVISTLLASFTGFLTEELLVKKRPTSMWLQ AIGSRKGGPIIEKIDKKESDIL >gi|269838509|gb|ACXB01000002.1| GENE 204 215657 - 215989 358 110 aa, chain + ## HITS:1 COG:no KEGG:PEPE_1713 NR:ns ## KEGG: PEPE_1713 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 110 1 110 110 149 92.0 2e-35 MEYSSFDHLLIIILGFFVAFAPRYLPLLFFSKRQIPDWFNDWMKYVPISLFTALVVKGIF ISSDYTLITSGNLALILGALVVIIIAYWTRSMAVSVIVGLVTVMILTLII >gi|269838509|gb|ACXB01000002.1| GENE 205 216264 - 217547 858 427 aa, chain + ## HITS:1 COG:no KEGG:lp_2145 NR:ns ## KEGG: lp_2145 # Name: not_defined # Def: extracellular protein # Organism: L.plantarum # Pathway: not_defined # 228 422 253 422 433 65 33.0 4e-09 MKKKLLTSTLLGVGTLILFSGGITPPVVNAATAPTNETNQATTNKAAQKITVTNVGNQIR LLVNTGTSNASLPNFFTIDYNQQQIKFNLSSIKDGAVTITENNQVVGNGEISARGTNLKA SIDVNKTTMKAEGTKSAIVKIGNQQATTNIVNKTTSTATSKAIADKTGSSTKAKDESNTK QAKSTKVINKDDQNTTDPVHQVFHENSSKRKESIKRTPNSYVNGALNIKIDGNFSDWDNV EKSPMVINGDNDNIKYAALVADDQNIYFYVMMHPVLSGGYTSFQPSGYDLTIGGKEFWIS FNNNQTVNLDVGQKQAVSMNIYSSDGSVDLSNQAVVAKQNIDQKMGDGSTVKGTGYVFEC AVPFSKLKGISNTSGQTITLKNSNLWNGELTTTGGSTGPILLASTGVAIAGWSVYQFTRR KRKLGLK >gi|269838509|gb|ACXB01000002.1| GENE 206 217548 - 218171 364 207 aa, chain + ## HITS:1 COG:no KEGG:LVIS_0892 NR:ns ## KEGG: LVIS_0892 # Name: not_defined # Def: hypothetical protein # Organism: L.brevis # Pathway: not_defined # 1 191 1 191 199 219 65.0 4e-56 MNIYLIIGIVIWLYSLSILKRAHLSAFHFIVGSGGLFFVLMAISDPYWVWFFTHAVINGV KVITNPFKICAVMSQYGMVNIFNTLAPVNMSIDYECSGIIETAAFVSLVVFLPLYNRHER LFFSLLGMVWIYVANIIRLLVVIVIVHFGGGPVFFLAHSIIGRIVFYVLVIILYYEVFTY SQLSRSLYRSFKGKVRQINVKIKGKQH >gi|269838509|gb|ACXB01000002.1| GENE 207 218173 - 219513 865 446 aa, chain + ## HITS:1 COG:CAC2589 KEGG:ns NR:ns ## COG: CAC2589 COG1215 # Protein_GI_number: 15895849 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases, probably involved in cell wall biogenesis # Organism: Clostridium acetobutylicum # 1 440 1 442 456 390 45.0 1e-108 MEYWLNLTLFKMGFWLTWALIPIVVEIIPAIISVIRLLIKTLRTKKLEMPDKMPMITVIV PVYNSEETLYNCIRSIHDSTYPTDLIQVILADNQSTDGSFEVYARAQNKFTDMHMQLIHT AKGKASALNSAIYTSIGTYIINIDSDGILEKNALMNMVLQFENDYDVSALTGTILPQKEM IKETKGWGRRLLQKNEYFEYAQAFLSGRTIEANNNQLFTMSGAFSAFRKDALLSTFMYNT QTIGEDTDMTFQIRDRLKRKVAICANAIFYVEPIPGLGKLYTQRQRWQRGEIEVIHDSAA DISMKNFFKNFLIRRMIIDHTFLFPKMIWLCASIVLLFFRYSPIMMGMSYLVIYLLYILV AMLNFGCICLLLREFKEEKHFYKSLWWVSFTLPLYNFMCYLIRFVGTVNGMTNASAWNLP TMDSEKKKIKSVVKEDWQTLQQHWRK >gi|269838509|gb|ACXB01000002.1| GENE 208 219515 - 219886 377 123 aa, chain + ## HITS:1 COG:CAC2526 KEGG:ns NR:ns ## COG: CAC2526 COG0720 # Protein_GI_number: 15895790 # Func_class: H Coenzyme transport and metabolism # Function: 6-pyruvoyl-tetrahydropterin synthase # Organism: Clostridium acetobutylicum # 7 120 5 118 118 89 37.0 2e-18 MPLVHTYKIKSYVNASHAMRWKDGEGKQHNHTWEVVCEIKSKDDHMIVFRDIEKKIQDVL GSFSGQFLNELPYFKEINPTVENVTIWLFDLLSSILEELSAKLVRIEVGESPTRSYVISD IDD >gi|269838509|gb|ACXB01000002.1| GENE 209 219905 - 221458 682 517 aa, chain + ## HITS:1 COG:no KEGG:LCK_01280 NR:ns ## KEGG: LCK_01280 # Name: not_defined # Def: integral membrane protein # Organism: L.citreum # Pathway: not_defined # 12 510 16 515 521 385 42.0 1e-105 MKKIFQYGNGLLMGLFSVLFFATLLFAITSPNLVLGDNPKTGAGTTMVTTTGIIIVMAIV VTWLTSGHFKRWTHQVFVVHKKITVSILLAFTILWQISFVLNVHPPIGFDVGAIHEALHK PISPELTGYFSLNYNNLPLLLVQHFFATILHSTKWLTFDLLTLLWVDLSALMNVLSVWVI DARKVVAAVYIHIGWLIFFPMIIVSYSDTWVLPLVSGYFLCYCLMRKNEFSWWVRILAAI GFGVTASAAYFIKPSAIVGVIAIGLGEILFQFKKDPKESANSLENWGILVITILALGSSY WGFNHVVQNQNYVVYHKDRQIPAVHFISMGVSGDGGYNPKDALKMAEFKTKRQRAEYSKK VLFHRLKQKGVVGYTKFLVKKHRNNTADGTFAWVKEGHFINENPIPKGKGWAGQLRQFVY LYGKRLGDFRFWAQAWWVIWLILIAFGWRNQCRTNQVMRLTILGGFLYLLIFEGGRSRYL IQFLPAYLILASLVYDQSILFFKHVYYWANGIPKKDS >gi|269838509|gb|ACXB01000002.1| GENE 210 221630 - 222073 305 147 aa, chain - ## HITS:1 COG:L170990 KEGG:ns NR:ns ## COG: L170990 COG0454 # Protein_GI_number: 15672558 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Lactococcus lactis # 1 145 1 145 147 155 55.0 3e-38 MKIVEINAPSPKLIQDLLVVWESSVKATHLFLSNDEIQKIKGYIPEALTSVAHLIVVEND HAHPVGFMGINDHFLEMLFISNDYRGKGLGKQLLEYGITNYAVNKLDVNEQNPLAKGFYE HMGFTVYQRSELDGQGNHYPILHMQKD >gi|269838509|gb|ACXB01000002.1| GENE 211 222495 - 223670 1077 391 aa, chain - ## HITS:1 COG:CAC0877 KEGG:ns NR:ns ## COG: CAC0877 COG2230 # Protein_GI_number: 15894164 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cyclopropane fatty acid synthase and related methyltransferases # Organism: Clostridium acetobutylicum # 4 390 5 391 391 388 49.0 1e-107 MLEKQFYKTFLKRSFNIPIKVNYWDGSSAVYGTGEPQATITFKKAIPIKSITKNASIALG EAYMDGTITVDGNLQKLITSAYENADSFFHNKKFIHFLPKQGHGEKESKEDVQNHYDIGN DFYKLWLDPTMTYSCAYFESDQDSLETAQMNKVRHIIRKLNPQPGKTLLDIGCGWGTLML TAAKEFNLKVVGVTLSQEQYDLVNQRIQEEGLSGVAEVRLQDYRELGDEKFDYITSVGMF EHVGKENLGIYFDNVAKYLKDDGVALIHGITRQQGGANNGWLNKWIFPGGYVPGLVENIE HIVNSGLQIDDMEPLRRHYQRTTEIWDANFNKHRDEVREMFDEKFVRMWDLYLQACAASF ESGNIDVIQYLLTKGASGRVLPMTRDYMYEK >gi|269838509|gb|ACXB01000002.1| GENE 212 223825 - 224715 729 296 aa, chain + ## HITS:1 COG:no KEGG:PEPE_1711 NR:ns ## KEGG: PEPE_1711 # Name: not_defined # Def: lipoprotein # Organism: P.pentosaceus # Pathway: not_defined # 1 280 1 282 301 257 57.0 5e-67 MKKWIWAVLIFLVAGVVGGYSVAHYHENELQYQRNITNGQTAIAQKNYAAAKNYFSRALT KKKNDREATNLLDQTRQFTRAESEFKSNEFTSARLDYQNVLKISDGSRTLKERSQARIKL IKKIRANFKKFSKQLKKAKKLNAAWDFYASNAQLDLLLSNEEFNKGYYETLHDQALTLQR FNNAGIVADQGAFNSDTTPDNNQGAENKSIKPKVKPRYEGPTTTKPAVPKKKPKDSSSKA ASKDQPSNKESSDKPDSDDSTNSSSETSSSGSSKPSQTEKEAENAMVEGPSASSQK >gi|269838509|gb|ACXB01000002.1| GENE 213 224926 - 226212 1227 428 aa, chain + ## HITS:1 COG:L0008 KEGG:ns NR:ns ## COG: L0008 COG0148 # Protein_GI_number: 15672258 # Func_class: G Carbohydrate transport and metabolism # Function: Enolase # Organism: Lactococcus lactis # 1 422 1 421 422 541 65.0 1e-154 MTLVIENVKAREIFDSRGNPTVEVDVTLSNGIMGRAAVPSGASTGEKEAVELRDGGKRLS GKGVLKAISNVNNNIAVALKGVDPFNQANVDQIMIDLDGTNNKRKLGANAILGVSMATAR AAANALHIPLYRYLGGTDLELPQTFHNVINGGEHANNQIDIQEFMITPVERTSFREGFEK IVNTYHALKKIIADAGYSTGLGDEGGFAPDLPSSEDALKILHEAIVKAGYVPGKEVAIAF DAAASYFYNRETKNYDFEGRTYTPQELGEYYGKLLNEFPEIISIEDPYGEEDWDNFSKFT SEYGQRVQIVADDPVCTNPRLIREAIKKGMANSILIKLNQIGTVTETLEAIRVARKNGYT TMMSHRSGETADTFVADFTVATNAAQLKAGAPARSERVEKYNQLLRIEEELGKAGTRLAH FPNQIDLD >gi|269838509|gb|ACXB01000002.1| GENE 214 226307 - 226996 794 229 aa, chain + ## HITS:1 COG:SP1655 KEGG:ns NR:ns ## COG: SP1655 COG0588 # Protein_GI_number: 15901490 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoglycerate mutase 1 # Organism: Streptococcus pneumoniae TIGR4 # 1 228 1 228 230 306 66.0 2e-83 MAKLVLIRHGQSEWNLSNQFTGWVDVDLSDEGVKQAKNAGKLIKEAGLEFDQAYTSVLTR AIKTLHYALEESDQLWIPETKTWRLNERHYGALQGQNKAKAAEKWGDEQVHIWRRSYDVL PPLLDASDEGSAANDRRYANLDPRIIPGGENLKVTLERVIPFWEDEIAPKLLDNKNVIIA AHGNSLRALSKYIENISDEDIMNLEMATGEPVVYDFNDKLEVQSKTKLN >gi|269838509|gb|ACXB01000002.1| GENE 215 227064 - 228017 708 317 aa, chain - ## HITS:1 COG:BS_yrdR KEGG:ns NR:ns ## COG: BS_yrdR COG0697 # Protein_GI_number: 16079715 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Bacillus subtilis # 7 316 8 321 321 228 40.0 8e-60 MTRKYALGLLLCLISVLSWGGMFPIMEPALKVMDPFYFTLFRYGSVAIIFALILFITEGA HAFKTEGHVFKLWVFGTAAFAGFSFLVFLGQQLAGASGSIIASVMMAIQPLLGVLVAWIY RGIKPTLASLVSMIVAAIGVFMVVTKGDFAVLFSGQNTLLAVTLILLGALCWVIYTAGGA DFPGWSILRYSTLTALLGVCSVIIALTIATILGWLHFPSLNQIAEVHSALIYMVTFAGVI AVFTWNLGNRIITPINGILFMNLVPITSFIIKIVNGYQVSLFEVAGCIITITALVGNNLY NRYKAKQSDTTELTSTH >gi|269838509|gb|ACXB01000002.1| GENE 216 227944 - 228165 129 73 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MGNIPPHESTDIKHSNSPSAYFLVIIILLHLLEKLINIYLPYEWILTLYNLFKNKRNGIW YYKFKEYSVLKWR >gi|269838509|gb|ACXB01000002.1| GENE 217 228172 - 229062 598 296 aa, chain + ## HITS:1 COG:BS_gltR KEGG:ns NR:ns ## COG: BS_gltR COG0583 # Protein_GI_number: 16079720 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus subtilis # 7 251 1 239 296 83 24.0 4e-16 MIGNDALNLELLYIFVKVSELKSINQSSVYLSLTQPAISKKIKQLEEYYEQELFIRSSKG MALTPIGQRVYLEAKQLISQVEGLRNAIRQKETKVNELRLGTLDSISSYLYPNFFVKSLN TFKSTTITNRIDELIEPFNRGSLDVIFMDSAFKDEINGIYSEKEVDEEPYFLVYSKDNSL INLDKESIDPCALQKMDLLMYPKYCPIHQRLIRVYQDLQINPPKIVEIDYGESMIAMVAN SNYITVLPKSIAINKVTADISRLKMKEFEVTFTRKISLFSRDAHVTEMVNRMMKEY >gi|269838509|gb|ACXB01000002.1| GENE 218 229233 - 229922 677 229 aa, chain + ## HITS:1 COG:CAP0113 KEGG:ns NR:ns ## COG: CAP0113 COG3382 # Protein_GI_number: 15004816 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Clostridium acetobutylicum # 1 219 1 217 235 219 46.0 4e-57 MQPLIVDDQIWELFPEAQFQVLVAHGIDNHLVAMQTEHYQAMLDNAVKEAQKFITDDVFR NNPVISEWRDAFTKFKKKKGARSSIEALLKRVSQGKSLSPINPLVDIYNSISLEFGVPCG SEDLQKMDGTMHLGVAKGGESFRPLGVEEDEPALPGEVIYYDQTGAICRCFNWREAQRTM LTDETTDAVLVIEAVNADQAQRAQQAAEELQQRIKTELGVDAERMVLKK >gi|269838509|gb|ACXB01000002.1| GENE 219 230200 - 231063 288 287 aa, chain + ## HITS:1 COG:no KEGG:LAR_1792 NR:ns ## KEGG: LAR_1792 # Name: not_defined # Def: hypothetical protein # Organism: L.reuteri_K # Pathway: not_defined # 1 278 1 278 280 394 66.0 1e-108 MQKINENYFEGERSLFNARDLIIEQATFGEGESPLKESQNIELIDTVFKWKYPLWYAKHV KGERIILETMARSGIWYTNDIELNDSTLQAPKLFRVCNQVKLNNIHFSDAQETLWKCNQV TMKNVQANGDYFGMNSTNLYIDHLDLVGNYCFDGAKNVEVHNSRLVSKDAFWNCENVTIY DSIISGEYLAWNTKNLTLINCTIESEQGLCYVDDLKMINCRVLRTNLAFEYCRNIDAEIT TDVMSIKNPISGNIRVASVGEIIMDDPTIDPQNTVITQTTTRLPKGA >gi|269838509|gb|ACXB01000002.1| GENE 220 231066 - 232253 741 395 aa, chain + ## HITS:1 COG:BS_patB KEGG:ns NR:ns ## COG: BS_patB COG1168 # Protein_GI_number: 16080196 # Func_class: E Amino acid transport and metabolism # Function: Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities # Organism: Bacillus subtilis # 3 385 2 387 387 311 41.0 2e-84 MSDFDQIINRTKTNSIKWHVAKNELPMWIADMDFKTSPAIVQALQEKVRDGIFGYEEIPP AYFNAVANWYERVHGFRPDPAWMTFATGVVPALSSAVRRLTAVGDNVLVQAPVYNIFYNS IVNNGRHVVSSDLLYDENKHVYHVDWDDLEAKLSDPLTNMMILCNPHNPIGLIWSRETLT RLAQLCQQYHVKIFSDEIHGDLTFNQTGYTPMFSLPAELIQNLVAAVSPSKTFNVAAMHA ATVLVPNKNLRAQINRGLNSEELAEPNLVAIPGTIAAYEKGLPWLQELKEYLVENRELVR NFISQEVGPRVALVEGQATYLIWIDVSQVTNDSAKLAKFIRKETGLILSAGSVYGGNGNH FLRMNVACPKERLQDGLQRLKKGLTAWQAQAKRRM >gi|269838509|gb|ACXB01000002.1| GENE 221 232392 - 232868 450 158 aa, chain - ## HITS:1 COG:lin0458 KEGG:ns NR:ns ## COG: lin0458 COG1959 # Protein_GI_number: 16799534 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Listeria innocua # 1 156 1 155 155 159 53.0 2e-39 MKYSMRFSDTIHVLAYIAILHDTAPLTSQAIAASVETNPSNIRRIMASLKKAGLIKTTVG KPQPALTRAPEQISLLDIFNSLDEADTNLIQVDPKTNPDCVVGGNIQDALNAQYAHFQKV VQDEMAKTTLADVIQDIATNEIKKRPESQGLMANYLKS >gi|269838509|gb|ACXB01000002.1| GENE 222 232987 - 233841 828 284 aa, chain + ## HITS:1 COG:lin0459 KEGG:ns NR:ns ## COG: lin0459 COG0702 # Protein_GI_number: 16799535 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Predicted nucleoside-diphosphate-sugar epimerases # Organism: Listeria innocua # 1 283 1 280 281 320 61.0 2e-87 MNILVTGATGNFGGYALKVLQDLVPEDNLYGLARTEEKGAKLKEAGFKVRIGDYTDSASL QKAFEGIDRLLFVSSTTDGDRQAQHRDVVEAAKAAGVSYIAYTSFGKATESTSPLAADHR FTEQLIEESGIAHTFLRNNWYLENEAAFLAAGAKGGKFIYAGGNGQAGWALRREYAEVAA RAVSGKFDFPEILELGGQLRTYEDLGAALRGATGKDLEVISADEATAAKNLVENAGVPQN VAELLVSFQQIVKSGALAVQPDDFEKYLGKPLTPMVDAIKEVLG >gi|269838509|gb|ACXB01000002.1| GENE 223 233952 - 234554 706 200 aa, chain - ## HITS:1 COG:CAC1385 KEGG:ns NR:ns ## COG: CAC1385 COG0406 # Protein_GI_number: 15894664 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Clostridium acetobutylicum # 3 167 4 161 191 78 31.0 9e-15 MLLTIVRHSTSQDNGRGLVSGARSDVGLSPAGIEYAKEVSQNYDWHQFDHVFCSPMLRAK QTAKILLGDDAALTYDPRITEMDFGDWDGVSEKLIYDKHPEVFDRLGMFNAKYADYAPHS ESYAALVARVSGFVEDLKQQFADQSVLLICHGMTTRAIFAAIFNVDVAEFGIVQNVTLNQ IHLDEKDHFKPRLNCYNNRV >gi|269838509|gb|ACXB01000002.1| GENE 224 234635 - 236497 1054 620 aa, chain - ## HITS:1 COG:no KEGG:PEPE_1702 NR:ns ## KEGG: PEPE_1702 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 615 1 615 617 816 68.0 0 MNLWGALFFVLSQIGFAGILRMAGIDKYLSWITSIVVQTLLLYILAMVGLLSFGIRSVVF VGCLFFLLRLIFIVLQIGKLPFEGIHYFDVWMVVIGLTMLHTLSQSILIHYDNYSHWAII VKYLLTQGHLPIAGDSIISFTSYPPATALWITEFISWVGFNDGTMLVAQFLLIWASLYAL FAVLRDRTRSMNGFFLCFIIAIINVFNIAIRMNNLLVDFVLPVVTAAGFAGIYAERKHPL WQCSITALFSAELLLVKNSGTMYVVMLVAYLLYSLATNREGPRWQRWFRSLALSAFIAVI GFLPFFWWNQHVHNTFTTISKHQISAQAYQQQLHHEGNAVVIKIGHRFLDQILNWHALST RGVLLINAALLIGWIVITFLVHHKNPLLKTLFAIDVSFLIYYASVFAMYLVSMPYAEAIQ LDGLERYLSSMVILNLLLGAMVLAVVMDQAMFEQRIGRRGVRSFKNVFTKNLYQLTALVL MIFSTILMFSEINGIEYNNTLGKEQLPVQLKQIAQPSMTYNHRKILLVDPHTNDVNNYYA GYVGRYYFFSDKVVGQENFMMDPATFKKTVAAYQYVALPEWHRTFTVMLQKTYHQSYKTG LYRVTSRGLRRVQKITPVKN >gi|269838509|gb|ACXB01000002.1| GENE 225 236830 - 237909 851 359 aa, chain + ## HITS:1 COG:FN1094 KEGG:ns NR:ns ## COG: FN1094 COG0463 # Protein_GI_number: 19704429 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Fusobacterium nucleatum # 1 355 1 360 360 229 37.0 9e-60 MKAYGILIPALNPDEKLLDLIQELLESSVPVQALVVVDDGSDQQAQPIFQRLADMEDERI HILHHEVNRGKGAALKTGFKYILENFPQIQGIATMDADGQHPVDALAACIHQFEKHPQDL IIGARQFTNQIPWRSQFGNVLTRKLVRMLTRQNISDTQTGLRVIPRSYVRQLLSFPGERF EFEFDMLLRARKFQVKITEQPIPTIYLDGNKSSHFRMVRDSVAIYARFLKFAMSGLISFL VDVGLFELMIVLMGKELLGERIIVATIVSRLLSAMVNYTLNHRVVFGKQGRQTVIKYGGL FIIQMFASGYLTDLVTGWLPHSQGSIAPLIAKIVVDFTLFIISYQIQRDLIFKEKRGAD >gi|269838509|gb|ACXB01000002.1| GENE 226 237909 - 239873 1325 654 aa, chain + ## HITS:1 COG:CAC1561 KEGG:ns NR:ns ## COG: CAC1561 COG1215 # Protein_GI_number: 15894839 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases, probably involved in cell wall biogenesis # Organism: Clostridium acetobutylicum # 5 645 10 634 769 397 36.0 1e-110 MPKIKKISYILAIVLSVLYLLWRVFFTIPWHAHLFTLIFALMLVGSEIVSNFTAYVLIVF RLIRQKKPVDFKIPDFDDRQPLPAIDVIIVTHNEEVALLRKTVNAAKFMKYPDPKLVNVV LADDGNRPEVRQLAKEYHANYVTMEENKHAKAGNINNALEQLHAPLFAIFDADMVPFSNF LMESVPFFTENFAELQEDPDHTVPLGFVQTPQSFYNADIFQFNLFLQDAVVNEQDFFSRD VNVLNGANGHALFTGSNAVFLREAVDKVGGFPTDTITEDFELGTKINSEGYKSLATVEPV SSGITPVDMKSVIKQRTRWARGVIQSCRNLHIFLNPKINLINRIILINTWLYWWSFLRRL IYIAAPILYALFKVQVVNANFWVLMIVWAPGYFLLHFVLGDASSNIRNERWGEIQETFFA PYLFLPVLLESIGIHAKKFKVTDKKVQFSWRDKLYIIPYLILWSLTLIAIIKFNWGKWGS EIIVGSVITFWLVMHFINLSFCLFISMKRDIHRRSERFIRHAKGRMQLANGKWADFKTRD VSDGGFSFELDDDQNQLEMGTETTGIIYYKNYPIHFKSKVVRVVDTEPKWYGVTVNIEDR KDQDYYLELTYDGENKFLSKEQDNWLTPFDQLHLNVILRLKELERSATRFMRRS >gi|269838509|gb|ACXB01000002.1| GENE 227 239904 - 241760 1197 618 aa, chain + ## HITS:1 COG:no KEGG:PEPE_1702 NR:ns ## KEGG: PEPE_1702 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 616 1 615 617 828 67.0 0 MSFFGLVVFMMAQLGYTGLIRMTGVNKYMSWITAMVVQTLALYFLAMVNFLEFGLKAVVI VGCIGLVVRVGLISFNRGKLPFEGIHYFDFWMLFLGIMMGRTLYFSPLIHYDNYSHWAVM VKFLLFQGHLPAGGETLISFTSYPPAAALWITEFVSWVGFSEGAMLVGQFLLIWAGLYAL FAALRDRSRTMTAFFLCFIIAISNVFNIAIRMNNLLVDFVLPVLAAAAFAGIYSYRRHPW LQCVTAGIFSAELLLIKNSGTMYVVMIGCYLMYSLTTNYSVGKHWLRIRFASWRTALTMG LSYLPFFWWNQHVHNTFHAVTKHQISAQAYQSQLNHESSAVMGRISHQFIHQILTLNSLS TRGVLLINIGLIVAWVVIGLILHKRTPLLKVLLAIDLSFVVYYVSVLAMYLVSMPYKEAI HLDGLERYLSSMVVLNLFLAALAIAIAMDRAMFVQEIQKRGVRSFSSLITKNIYQFTTLA LMIFSTILMISEIDGVEYNNAHSQEALPVQLPQIAKQTTKYNHQKVLLVDPHQDDVASYY AGYVGKYYFFSDNLVAREDFMMSPTDFKKLVQSYQYIALPEWHRTFTVMLQKTYHQDYRT GLFRVTPEGLVKVRQVKP >gi|269838509|gb|ACXB01000002.1| GENE 228 241843 - 242010 243 55 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MDWRRKIREILLFVLITTGMSWWVADFFPHQFQFNWGIIVVVNLMFAIVVLTRKR >gi|269838509|gb|ACXB01000002.1| GENE 229 242240 - 243583 1430 447 aa, chain + ## HITS:1 COG:SA0956 KEGG:ns NR:ns ## COG: SA0956 COG1914 # Protein_GI_number: 15926690 # Func_class: P Inorganic ion transport and metabolism # Function: Mn2+ and Fe2+ transporters of the NRAMP family # Organism: Staphylococcus aureus N315 # 12 443 13 445 450 463 57.0 1e-130 MSEKLDEVDNKSLDEINGSIKVPKNAGFFKTLMAYTGPGILIAVGYMDPGNWITSIAGGA QFKYTLLSVILISSLIAMLLQAMSARLGIVTGKDLAQLTRERTSKRVGFMLWVVAELAIM ATDIAEIIGSGIALELLFHIPLIIGILITAADVLILLLLMRLGFRKIEAIVATLVMVILI VFAYEVFLSDPSISGIIKGYVPAPVILQNNSMLYLSLGIVGATVMPHDLYLGSSISQTRE IDRRDRKNVAQAIRFSTIDSNMQLFLAFIVNSLLLILGAALFYGTDSSLGRFVDLFNALS DNQIVGAIASPMLSMLFAVALLASGQSSTITGTLSGQIIMEGFIRLRVPLWVQRLVTRLL SVAPVLIFAIYYHGDEAKIENLLTFSQVFLSVALPFAVIPLVMYTSSKKLMGEFANRQWV KWCAWIATIILILLNIYLILQTLGIVK >gi|269838509|gb|ACXB01000002.1| GENE 230 243865 - 244863 897 332 aa, chain + ## HITS:1 COG:lin2102 KEGG:ns NR:ns ## COG: lin2102 COG1609 # Protein_GI_number: 16801168 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 7 332 4 334 336 250 35.0 2e-66 MNKKKVTIKDVAKAAGVSVTTVSQSLNGNGSRFSPRTIKRIQRAKEKLGYEPDYFAQRMI MKKSKMIGVLVPDITNPFFNSLVRGIENVLYQYDFMTMLCNADMDQGKEDRYLTELTHRG VDGFIIASSSISNEAIQKILRGEKFPFIVLDQKKSEGISDAVLTDDFSGGQQAAQHLWDL GHRQVAVVMPENATENIQNRLRGFQTVFGEDEIVRVDAELSKKSGRKAAQAVINSPATAI FAVNDQIALGLYLGLADQGCRIPEDYSVIGYDNIDMCEYVVPQLTTIAQPIFELGQTTAK MLIDRIEKPNKQWEEELLPVQLVKRFSTARLN >gi|269838509|gb|ACXB01000002.1| GENE 231 244995 - 245900 1169 301 aa, chain + ## HITS:1 COG:SA0258 KEGG:ns NR:ns ## COG: SA0258 COG0524 # Protein_GI_number: 15925971 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Staphylococcus aureus N315 # 4 301 5 302 304 249 48.0 3e-66 MSTVTIIGSINLDRTIRVKQMPKPGETMHTKEIFSAGGGKGANQAVAAKRSEAKTNFIGA VGNDDAGRAMLDLLEHEDIDLSGVTTLDNQATGQAYIVVDDAGENEIMLHAGANMAFTPD YVASKADVIKNSDFVIAQFETGLEATTKAFEIAHEAGVKTILNPAPAIEKVPDDLLAVTD MIIPNETETEILTGIEVTDEASMVKAAKALHDQGIKAVLITIGSKGTFYSVNGETGIVPA FKVKAVDTTSAGDTFIGAMSTVLNPDFSNLKDAILYGNKASSLTVQRFGAQPSIPYKKEL N >gi|269838509|gb|ACXB01000002.1| GENE 232 245918 - 246313 392 131 aa, chain + ## HITS:1 COG:SA0259 KEGG:ns NR:ns ## COG: SA0259 COG1869 # Protein_GI_number: 15925972 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type ribose transport system, auxiliary component # Organism: Staphylococcus aureus N315 # 1 131 1 134 134 124 53.0 4e-29 MKKTKVINSDISRVIAQMGHFDKLSIGDAGMPVPAGTEKIDLAVDNGIPSFTQVLLNVLE ELEVQRIYLAEEIKTENPKMLESIQEIMPNVPVTFIPHSEMKQDLNNCRAFIRTGEMTPY SNIILESGVVF >gi|269838509|gb|ACXB01000002.1| GENE 233 246480 - 247364 894 294 aa, chain + ## HITS:1 COG:SA0260 KEGG:ns NR:ns ## COG: SA0260 COG4975 # Protein_GI_number: 15925973 # Func_class: G Carbohydrate transport and metabolism # Function: Putative glucose uptake permease # Organism: Staphylococcus aureus N315 # 1 294 1 292 293 323 66.0 3e-88 MNATAILIGLGPLIGWGLFPTLASKIGGRPVDQIVGTAFGTFIFALVVAMVNGLSLPTGW NLVLTIASGIGWASAEIITFKSFAMIGSSRAMPITTAFQLLGASLWGVIALGNWPGITAK IVGGIALIMIIFGASLTVWSEHKTKENSKLITQAVGWLAVGEIGYWVYSAAPQATPVDGM HAFLPQAIGMVIVGVVYAVFLSMKGEKSALTEAVSYKQIISGFFFAFAALTYLISAQPNM NGLATGFILSQTSVVLATLTGIWFLGQKKTPKEMAVTIAGLVLILVAATITVMI >gi|269838509|gb|ACXB01000002.1| GENE 234 247573 - 248736 1062 387 aa, chain + ## HITS:1 COG:BS_yqiG KEGG:ns NR:ns ## COG: BS_yqiG COG1902 # Protein_GI_number: 16079477 # Func_class: C Energy production and conversion # Function: NADH:flavin oxidoreductases, Old Yellow Enzyme family # Organism: Bacillus subtilis # 6 339 8 339 372 297 46.0 2e-80 MVSYKFLQPYTFKNGAQVKNRVVIPPMTIQSSLEDGSVSRDDLFYAGLRAGGVGMFISPV ANVTGDGKGFEGELSVADDRFIPGLAKLAATMKKGGTKAILQIFHAGRMSNSKVLRGTQP VSASAVAAPREGMETPRELSEIEIEQIIKAFGEATRRAIQAGFDGVEIHGANTYLIQQFF SPHSNRRTDHWGGSVEKRMNFGLAVVQAAHRAVAKYAGDHFMLGYRISPEEIEEPGIRLA DTLQFIDELADQPLDYLHVSMGNVWRKSLNDDSEKRPTILRIKKQVHNRLPIIGVGSVET PADAEKVMDEGIDFVALGRESLREPQWVEKVARGHEDAIRYQVDPDALDELGLNPALMDF LDQIGTDLRFIGADREKKSGDSVVFDR >gi|269838509|gb|ACXB01000002.1| GENE 235 249026 - 249646 462 206 aa, chain + ## HITS:1 COG:L0215 KEGG:ns NR:ns ## COG: L0215 COG0583 # Protein_GI_number: 15673858 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Lactococcus lactis # 1 197 1 197 292 181 49.0 6e-46 MEIRTLKYFWTIAEEGTISGAAETLHITQPTLSRQLRELENELGTALFIRGRRKLQLTEA GLFLKTRAEEILQLTQQTSREFENRRKQLFSGHVAIGCVEADNSDTLALILEDFVQDYPQ VTFTIYSGTSDDITTRLDKGLLDVAILLKPIETEKYGEITLPRTERWGLLVAKDSFLARK KSYSSNRFMGDAIIHCEAARSPAVAC >gi|269838509|gb|ACXB01000002.1| GENE 236 249597 - 249911 133 104 aa, chain + ## HITS:1 COG:L0215 KEGG:ns NR:ns ## COG: L0215 COG0583 # Protein_GI_number: 15673858 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Lactococcus lactis # 3 100 193 290 292 82 39.0 1e-16 MPLFIARRPEVQQLLAEWSGIAYNQLRIVGNFNLSFNILALVKRQVGHAFGIEGAISQTN PDGIKFLPLDPEIKTNCVLVWRKERRHSPVVNQFIDYFRDAFKA >gi|269838509|gb|ACXB01000002.1| GENE 237 250001 - 250510 516 169 aa, chain + ## HITS:1 COG:MA0407 KEGG:ns NR:ns ## COG: MA0407 COG0716 # Protein_GI_number: 20089301 # Func_class: C Energy production and conversion # Function: Flavodoxins # Organism: Methanosarcina acetivorans str.C2A # 3 169 11 178 179 103 31.0 1e-22 MTVIYFSHVGEHWINGRPVQQDVGNTQFLAEQIAQVLGESPVRIVPEEFYPQEYEELVEK IRVERQTGRLPAIAKPHEIEVNDRLLIGYPIWFGTIPNVVKNFLQQLKNPPQVTYPFCTN EGSGMGNSENELRQILPLTKLEPGLAIRGSRVQQSTTAISHWLKQLNLI >gi|269838509|gb|ACXB01000002.1| GENE 238 250524 - 250940 430 138 aa, chain + ## HITS:1 COG:L178204 KEGG:ns NR:ns ## COG: L178204 COG1917 # Protein_GI_number: 15673516 # Func_class: S Function unknown # Function: Uncharacterized conserved protein, contains double-stranded beta-helix domain # Organism: Lactococcus lactis # 1 131 1 130 133 175 66.0 2e-44 MKNEEVKNGVIFPIGAKNEAYAQFFTGQSYLQNLVADSAVNVGVGNVTFEPGCRNNWHIH HNGFQILLVTGGEGWYQEEGAPAQHLEPGDVVVTHDGIKHWHGATKDSWFEHIAITAGTP EWLEPVSDEQYAAVEEDE >gi|269838509|gb|ACXB01000002.1| GENE 239 250942 - 251259 462 105 aa, chain + ## HITS:1 COG:L178933 KEGG:ns NR:ns ## COG: L178933 COG0599 # Protein_GI_number: 15673518 # Func_class: S Function unknown # Function: Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit # Organism: Lactococcus lactis # 3 103 2 102 102 140 63.0 7e-34 MAKKQTAGREQLGDLAPKFAELNDDVLFGEVWSRESQLSARDRSMITCASLLTQGAFPQL EAHMKMAKTNGVTKDEMVELVTHLAFYAGWPKAWSAFGLVKKIFD >gi|269838509|gb|ACXB01000002.1| GENE 240 251504 - 252211 629 235 aa, chain - ## HITS:1 COG:SPy1863 KEGG:ns NR:ns ## COG: SPy1863 COG0789 # Protein_GI_number: 15675682 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 4 235 5 236 245 144 34.0 1e-34 MANYSTGELAKKVGVSIRTVQYYDRRQLLSPAKLSEAGRRVYTDHELEQLELITFLKSLG LSLNNIKELLNSPNFDEVLQTLLNQEELQLKQKIKQQEDTLKTIGEIKHWLTDQIPITPN SFIGIEESIRRRRSLTRKRSALFVFGALIDILEILAIWYGISSSNWWAVVVAFCPIIVAV AIAVYAYYRSVEYVCPQCEAYFKPAFGEFFWAKHSPKTRWLGCPNCDYEGYCVEI >gi|269838509|gb|ACXB01000002.1| GENE 241 252751 - 252873 69 40 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MWTIIGQLAVYFLQQRFAHNGNETDDLKLIEGQIVRALRK >gi|269838509|gb|ACXB01000002.1| GENE 242 252897 - 253349 460 150 aa, chain + ## HITS:1 COG:BH3077 KEGG:ns NR:ns ## COG: BH3077 COG1846 # Protein_GI_number: 15615639 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus halodurans # 1 150 1 150 150 179 63.0 1e-45 MEDILRVIGSIARELDSIANVEFKEINLTKGQFLYLARVCENPGIIQGELAELLRVDRTT AARALRKLEDQGLISRQFTADNQKIKRLYPTEKGRSVYPIIKRENEYSNATALQGLSEEE VKQVRNLLLRVEKNVNADWHYVKNGNHRDY >gi|269838509|gb|ACXB01000002.1| GENE 243 253361 - 253894 438 177 aa, chain + ## HITS:1 COG:BS_paiA KEGG:ns NR:ns ## COG: BS_paiA COG0454 # Protein_GI_number: 16080268 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Bacillus subtilis # 1 169 1 169 172 159 47.0 3e-39 MTIEVQPIRERDLANLRRISIETFGATFGLYNAEADLQQHYQRAYNVEQLHQELLNPESQ FFFAKIDDEIAGYLKINVGDAQSEPMGAQVLEVERIYVRPSFQRRGVGTCLIKQAEQLAY AAHKTQIWLGVWENNKKAQHFYQMQGFKQVGDHRFQLGKSEQRDLILMKPVNNISEG >gi|269838509|gb|ACXB01000002.1| GENE 244 253891 - 254301 347 136 aa, chain - ## HITS:1 COG:SP1549 KEGG:ns NR:ns ## COG: SP1549 COG0242 # Protein_GI_number: 15901392 # Func_class: J Translation, ribosomal structure and biogenesis # Function: N-formylmethionyl-tRNA deformylase # Organism: Streptococcus pneumoniae TIGR4 # 1 136 1 136 136 135 50.0 2e-32 MQKNIVRDQNFLSQKSVPATRADLPTALDLVDTLAANADRAVGLAANMIGVKKQIIAVSI GVMNIAMLNPKLTKKSHPYQAKEGCLSLAGERSTTRYKEIEVQYQDLNFKKQTQHFSGWI AEIIQHEIDHCAGVLI >gi|269838509|gb|ACXB01000002.1| GENE 245 254515 - 255228 861 237 aa, chain + ## HITS:1 COG:lin1946 KEGG:ns NR:ns ## COG: lin1946 COG0284 # Protein_GI_number: 16801012 # Func_class: F Nucleotide transport and metabolism # Function: Orotidine-5'-phosphate decarboxylase # Organism: Listeria innocua # 1 233 1 229 233 218 51.0 6e-57 MKTPVMIALDFESVEELQSFLKQFPSHLKLTVKIGMELFYGQGPQIVRNLRQKGHAVFLD LKLHDIPNTVEKAMFQLGKLGIQYTTIHALGGKPMIQAAKRGLMAGARATKDPAPKLLAV TELTSISERQLQEEQNVPLKMNEQVQKLAQLAENAGADGVICSPHEVAQLKPVLPADFLY VTPGIRMPDAKKDDQQRVMTPAEAQKAGSSALVVGRPITKAADPVVAYQRIVESMQD >gi|269838509|gb|ACXB01000002.1| GENE 246 255528 - 256337 696 269 aa, chain - ## HITS:1 COG:lin0440 KEGG:ns NR:ns ## COG: lin0440 COG0561 # Protein_GI_number: 16799517 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Listeria innocua # 2 269 5 264 270 137 30.0 3e-32 MIATDMDQTFLNNQNTYNKDRFKELFNEMQRQKIHFVAASGSQHERLRALFTPYANQMDF ISQNGSIIYSGDQLLDVEQLPVPLVQQTIDTIFENFNDDEVMINVCGLTSSYIDQTTPQE IVDFLHQFYKEIRLVKNLRNFAQTGITDPVVKIAVSFADSADLPGKVQNLRQKLDPQLTS LSSGFNTELIGFSHVDKASALKHLMANYRVTPAELVTFGDNENDLKMLQMTPNGYAMKSG YPIVKEVTQHQTRFDNDHDGVLDVIESLL >gi|269838509|gb|ACXB01000002.1| GENE 247 256457 - 256582 176 41 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKKNKFFKTSSVLEIVGGSLNLVGGALILAAGIVGLAKPRK >gi|269838509|gb|ACXB01000002.1| GENE 248 256634 - 256726 60 30 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLLFSVLSVSMMSKNAKVDIKVVKFGGGAR >gi|269838509|gb|ACXB01000002.1| GENE 249 256815 - 257771 917 318 aa, chain + ## HITS:1 COG:CAC1958 KEGG:ns NR:ns ## COG: CAC1958 COG0656 # Protein_GI_number: 15895230 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Clostridium acetobutylicum # 2 275 6 262 274 85 23.0 1e-16 MALTELVNGTKLPKQIISTALGVSRLHDALWSGYRHFYEEIKDTDDDNEDPYAHFPMTKE PHGDIAVTLKMYRQPKLKRKNLYITVNFAKKVNDKPSFEEAIEDAFQTMKFDYFDALLLD QAVFGNDDELMTELWHSLEKLYEKGCIGALGVANFSIEQVEKLRKKASVAPMIFKTGYFP MSLNDDIYDYCQQNHLQIMADFPFLDYSFVDLPTMGKIASKYRVENDELMCQYAHQRHIM PIIKKFWVLHAHNPLEQNYKITINDLHRLERLDNASNEDWLPLKDYGIFKIFQSRAIDHD RMERSGEEHYSGFSPFVF >gi|269838509|gb|ACXB01000002.1| GENE 250 258269 - 258523 434 84 aa, chain + ## HITS:1 COG:SPy1265 KEGG:ns NR:ns ## COG: SPy1265 COG2261 # Protein_GI_number: 15675224 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pyogenes M1 GAS # 2 78 1 77 82 66 62.0 1e-11 MLGWIWSLIIGGIIGAIAGALTSRDLPAGWLGNIVAGLVGAWLGQSLLGSWGPSLAGMAL IPSILGAVILVVIVSIIFGMRKKG >gi|269838509|gb|ACXB01000002.1| GENE 251 258534 - 259079 612 181 aa, chain + ## HITS:1 COG:no KEGG:PEPE_1671 NR:ns ## KEGG: PEPE_1671 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 181 1 181 181 234 69.0 1e-60 MNRTSKSLLSLMAVITLLLTLWFIATEVYIPYLTDFFETLRTSNAQVMEVIAIVFSILVA LFALVMLGIALMSRTSEKDLKLQDGHGNLTVPKKSMEQIINKAVAEDHHVGNIDTKVRVR SKDHLQAKVSVEDLSNDNYRVNARDIQRSVQESVQRHLGMKSDVKVQIIPRQHSKKSLKV V >gi|269838509|gb|ACXB01000002.1| GENE 252 259129 - 259293 264 54 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|270290084|ref|ZP_06196310.1| ## NR: gi|270290084|ref|ZP_06196310.1| predicted protein [Pediococcus acidilactici 7_4] # 1 54 12 65 65 77 100.0 2e-13 MIFGIIWVTIGFGSAVLVGLLALIGFLLGKYGRSLLSQLISEVMSALNMDRKQS >gi|269838509|gb|ACXB01000002.1| GENE 253 259307 - 259429 115 40 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MAKKTDKNKPLRSLMGLMVVSSLWFVWKNRRKFKEALNHG >gi|269838509|gb|ACXB01000002.1| GENE 254 259422 - 259838 618 138 aa, chain + ## HITS:1 COG:SA1984 KEGG:ns NR:ns ## COG: SA1984 COG1302 # Protein_GI_number: 15927762 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 8 123 39 154 169 94 41.0 6e-20 MDKPRIAQTSLSFDEGVIEKIAGLASRKVDGILSFDGGFFDNITDKIRNKVDPTQGIKAE VGEKQVSLEMNAKVEYGYDIREIFTQVCDVISEEVERLTGLKVIELNFHVSDVLSKKEWK EQNNRKSNSDLAPRPEAK >gi|269838509|gb|ACXB01000002.1| GENE 255 259866 - 260300 560 144 aa, chain + ## HITS:1 COG:SA1984 KEGG:ns NR:ns ## COG: SA1984 COG1302 # Protein_GI_number: 15927762 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 2 133 25 154 169 79 38.0 2e-15 MENKIAKSENKMAKPETKLTFDDEVLAKIAGKTANGVDGVLSLEGNIFEKVTDRISKGDD PTTGVNVDVDDENHSVSLKMDAILEYGKNAQAIFDKMIDKITSAVKEITNMEVSEIKLNV KDVLTREEWAEKNNKDRQQRDDKH >gi|269838509|gb|ACXB01000002.1| GENE 256 260363 - 260536 399 57 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MDQTETAWLLEQARQLAQQATTYQQKAFYVALGDLIREQQKRADQLENELDGRMWEH >gi|269838509|gb|ACXB01000002.1| GENE 257 260536 - 261219 768 227 aa, chain - ## HITS:1 COG:BS_yrkL KEGG:ns NR:ns ## COG: BS_yrkL COG2249 # Protein_GI_number: 16079700 # Func_class: R General function prediction only # Function: Putative NADPH-quinone reductase (modulator of drug activity B) # Organism: Bacillus subtilis # 1 151 1 157 174 126 43.0 3e-29 MKTLVVVAHPKLASSTTQPFFKAAVEDFTTVTWHPLHAEFDVTQEQQLLTEHDRIIFQFP LYWYGAPGLLKNWLDQVLTVRFATGNRYALADKELGLVVTAGEAAADFQAGGAEQYTMSE LMRPFEALAHKLRMRYLPVLAVHQFLYLTPEAQQRLLVRYQQYVNNPNFEHFAGQVAWFS DQLQHQITKADSASATLNQVLESLENRQSELDDLAWNLSMLKKEEDS >gi|269838509|gb|ACXB01000002.1| GENE 258 261222 - 261530 213 102 aa, chain - ## HITS:1 COG:no KEGG:PEPE_1664 NR:ns ## KEGG: PEPE_1664 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 101 1 101 103 129 60.0 3e-29 MKNKYPVTRYYGVPLELDSSGNYRFKSTIKIHAWRNGKHTRGHFQKPGQLFLTENNQLVM IVATEKMNFSQRHSLAPIQRFTKESIAPDMLATAQQVFHEED >gi|269838509|gb|ACXB01000002.1| GENE 259 261520 - 262230 740 236 aa, chain - ## HITS:1 COG:SA2297 KEGG:ns NR:ns ## COG: SA2297 COG2357 # Protein_GI_number: 15928088 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 23 228 28 230 230 180 48.0 2e-45 MILERNNMFNIRQINDDLERVIGPERVTELRNLMRYYRLCQSAVNEVGTKLENLDGEYEN EYNHNPIHHMEQRMKSVDSLFNKMKKKHLPKTIAAVENNIFDIGGIRVITNYISDVYTIK ENLISQDDVTLLKVKDYIRDPKPSGYRSLHLVVKVPVFLSTGPVETPVEIQIRTVGMDMW ASLEHKLRYKTNVPSAKVADFADRLVDDANTIYKVEQNLQTIYRELSEPGVFKNEE >gi|269838509|gb|ACXB01000002.1| GENE 260 262383 - 263375 839 330 aa, chain + ## HITS:1 COG:L45677 KEGG:ns NR:ns ## COG: L45677 COG2376 # Protein_GI_number: 15672230 # Func_class: G Carbohydrate transport and metabolism # Function: Dihydroxyacetone kinase # Organism: Lactococcus lactis # 15 330 1 315 316 415 65.0 1e-116 MKKIINDPKQVVEEMLQGMVKSYPDYLKRIPETGVVYRTDLAKIAGKVGIVSGGGSGHEP AHAGFVGAGMLSAAVCGEVFTSPTPDQIFEAIKQVNSGAGVFLVIKNYSGDVMNFEMAQD MAEMEEIPVKSIVVDDDVAVENSTYTQGRRGVAGTILMHKILGAAADQGASLDEIADLAT AVLPNLKTVAVALSGATVPEVGKPGFVLADDEIEYGVGIHGEPGYRREKLQPSKKLANEL IEKLRSEFRFRKGDAVAVLVNGMGATPLMEQYVFMNDVLDQLAEEGLRVRFSKVGNLMTS LDMAGVSLTILKIKDDWVDKLNYATHTIAW >gi|269838509|gb|ACXB01000002.1| GENE 261 263395 - 263961 605 188 aa, chain + ## HITS:1 COG:L46694 KEGG:ns NR:ns ## COG: L46694 COG2376 # Protein_GI_number: 15672231 # Func_class: G Carbohydrate transport and metabolism # Function: Dihydroxyacetone kinase # Organism: Lactococcus lactis # 1 187 1 192 192 191 51.0 8e-49 MLTVEDVKKWMEKFNQEVQAQHAYLSELDTPIGDGDHGNNMARGMNAVMEALDGKDFPDL PAIFKTIAMSLISKVGGASGPLFGTAFIEMAKANTGDVHELLVAATAGVQKRGKAILGEK TMVDVWEPISEKATFTAEDVDRAVESTKPMIAKKGRASYLGERSVGHLDPGAVSTGYLLK TLLAVEAK >gi|269838509|gb|ACXB01000002.1| GENE 262 263961 - 264329 559 122 aa, chain + ## HITS:1 COG:L47257 KEGG:ns NR:ns ## COG: L47257 COG3412 # Protein_GI_number: 15672232 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 1 122 1 122 123 124 50.0 4e-29 MEYGIVIVSHVAEIAQGVQRLIKQVAQDVPVTTAGGLANGEVGTEMQRIMQAFDDNEADK LLAFYDLGSAKMNLEMAMEMTAKEVKLYDTALVESAYTAAALLQVNTKIDDVEEQLQDLK IK >gi|269838509|gb|ACXB01000002.1| GENE 263 264524 - 265123 481 199 aa, chain + ## HITS:1 COG:L114370 KEGG:ns NR:ns ## COG: L114370 COG1846 # Protein_GI_number: 15672690 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Lactococcus lactis # 4 150 6 163 291 71 31.0 8e-13 MHKDEILDNLMKITHQPFLVFANRVEEKTDNTFETLKLLAKEENVTAGRISEYLDIKPSS VTQIIKKLEQAGTVVREKSPSDSRVTIIKITDKGTESLKTHESIGGTLKDVLFKDFSDDE LTNLADYLKRMVENMDGDEFKEKFSEVFSNDRRWEQFGKMSPHFERAREQMLRHNHFGRM RPGDFRGFGGFDDWKKGRR >gi|269838509|gb|ACXB01000002.1| GENE 264 265126 - 266904 229 592 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 353 575 135 354 398 92 28 2e-17 MAANARFNDSIRKDRTKFNFRQFFGLIKKTSPKYLLLVLGVILLAISSGVQVYVPKLAST LVNNFTKGVDYSLLAKVVLLFVASAIFSAIGGTILGIFGENVIQNLRKTLWERLTLLKVS YFDTVKAGEISSRLVNDTNQVKQLLAVTFPQTLASIITVVGTVYMMIRMDWHMTLAMVIA VPVVVILMIPVMAFGTKVGHVRQDALALFNGIVSETLSEIRLVKTSNAENQAQEHADKEI NRLFKIGKKEAVFDAAMQPIMMMVFMSMIFGLLAYGIHRIAIGVMSIGTLMSFLMYLFNL IGALPIIATLFSEMAKASGSTRRVEELLEEVPEDFNHGEMLDLADKDLTVEHVDFAYADA PEEEVLKDISFEAKPNQVIAFAGPSGGGKSTIFSLLERFYEPTHGEIKFNNTNIQDIRLT NYRKQIGFVSQDSAMMAGTIRDNLTYGLDDDFTDEQLWEVLDLAYARKFVEEMPSQLDTE VGERGVKISGGQRQRIAIARAFLRNPKILMLDEATASLDSESEMKVQDALANLMRGRTTL VIAHRLSTIVDSDQIYFVENGQITGSGTHQELVASHPMYAKYVNEQFKVATA >gi|269838509|gb|ACXB01000002.1| GENE 265 267246 - 268286 979 346 aa, chain - ## HITS:1 COG:L63684 KEGG:ns NR:ns ## COG: L63684 COG0673 # Protein_GI_number: 15672247 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Lactococcus lactis # 3 337 23 357 357 325 50.0 1e-88 MSLTMAIIGFGKSANRYHIPYIKERDIKIKYIYNHRRHPEKEQGFYDPNTIFTDDLEQVL NDPEVQLVTVCTPPATHFEYGKSALEHGKNVLIEKPFVANQAEAKELFALADAKKLLAMP YQNRRFDSDYLTLKKVIERGYVGRPLLLESHFDKYRPDDSLHEGSQVDGQFYGLGVHMLD QILGLFGKPQTVNYDIRAIQNPASSVDDFYETQLFYDNFKATVVSNPLAARPYPRFLLHG TNGTYVKYDIDQQENDLKLGIMPGDDHFGIDAPSQFGVVKYKNQNGDWIEKQIPTINGDY GRVYDSIAATLTNGDPKLVSNEQALWNMEILEAGIAEKGPHLYQMK >gi|269838509|gb|ACXB01000002.1| GENE 266 268407 - 269651 1382 414 aa, chain - ## HITS:1 COG:L60596 KEGG:ns NR:ns ## COG: L60596 COG2195 # Protein_GI_number: 15673792 # Func_class: E Amino acid transport and metabolism # Function: Di- and tripeptidases # Organism: Lactococcus lactis # 3 411 2 410 413 512 63.0 1e-145 MAKYETLLPRFLRYVKVNTRSNPNSSTVPTDPKEVEFLKTLAKELEEVGVVDVHTQPSSG YVVGTLPANDDGNTPVIGYISHVDTADFNAENIQPQVHKNYDGESDIDLSGDGKWVLKPS VFPSLKKYAGHDLVTTDGLTLLGADDKSGVADIMTMLDYYKEHPEVKHGEIRIGFAPDEE TGTGADHFDAKDFNTKYAYTVDGGPLGELEYETFNAAQATIEIQGNEVHTAVAKGLMVNA LQVGIDYHNQLPEHDRPEETEDREGFYHLFKMTGTPDHAQLVYIIRDHDRQKFEERKQTM KDIAEKMNAEFGEDRVNVEVHDQYYNMREILEKDMTPVNIAKKAMENLDIKPDIYPVRGG TDGSKISFMGIPTPNLFAGGENMHSRYEYVSVQTMERAVDLLLEINRINTEENN >gi|269838509|gb|ACXB01000002.1| GENE 267 269882 - 271072 1148 396 aa, chain + ## HITS:1 COG:lin1467 KEGG:ns NR:ns ## COG: lin1467 COG1125 # Protein_GI_number: 16800535 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, ATPase components # Organism: Listeria innocua # 2 394 1 397 397 462 60.0 1e-130 MLLEMSHLSKVYPGNKVAVDDFNLNVEKGEFICFIGTSGSGKTTTMRMINRMLKQTSGTI KINGQDIAKMDPVKLRRKIGYVIQNIGLMPHMTIRENITLVPKLLKWPEEKRNERAKEMI KLVDLPEEYLDRYPSQLSGGQQQRIGVVRALAADQDIILMDEPFGALDPITREDLQDLVK DLQERLGKTFIFVTHDMDEALRLSSRIVVMTGGKQVQVDTPENILRHPANDFVANLIGQD RLIQAKPSITTVGQVANKPASIAIDQPVVRALDIMHSRRVDTLLVTDAEERLKGIVSIEK VDEYYHSGKTVGEIMDPRVFYVNEDSIIRDTVDRILKRGFRNVPVVDKKGRLTGIVTRAT LVDVVYDALFTDDSIVADGNNSSQTTKESTKKDGDQ >gi|269838509|gb|ACXB01000002.1| GENE 268 271072 - 271707 705 211 aa, chain + ## HITS:1 COG:lin1466 KEGG:ns NR:ns ## COG: lin1466 COG1174 # Protein_GI_number: 16800534 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, permease component # Organism: Listeria innocua # 1 209 4 212 218 226 60.0 3e-59 MINFLNQYGADILSKTGQHIYISAVALALGIIVAVPLGMLLTRAPKISGAVIGLASVMQT IPALALLAIMIPIFGIGSTPAIVALFIYSLLPILRNTYLGLTSVDPALIDAAKGMGMNSF QRMWKVELQLALPVIMAGVRLSATYVIAWTALASYIGAGGLGDLIFNGLNLYRSDLILGG SIPVIILALVADFLLGKLEAKLTPKTTQEVG >gi|269838509|gb|ACXB01000002.1| GENE 269 271708 - 272634 675 308 aa, chain + ## HITS:1 COG:BS_opuCC KEGG:ns NR:ns ## COG: BS_opuCC COG1732 # Protein_GI_number: 16080434 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) # Organism: Bacillus subtilis # 14 304 13 303 303 325 53.0 7e-89 MLKKLLKLILPLGVLTVMLSSCGWPGLNGTSGDTVRIAAQNTTEQQIMGAMIQQLIEHDT NLNAEVINNLGSGTVSFQAQKRDEADLTSIRFSGTDYQTILHGPQGKSPQAVNDYVNKEF DRRYDMTYFPTYGFADTYQFMVTQDFAKKHHIETVSDLKKIAPKMKVGIDQTWLSRKGDG YEDFKKRYGFQFGHVYPMQMGLLYNALASNKMDAVLGYSTDGRVRSYHLKLLKDDRQFFP PYSASVVVNNKALKKYPQLAPVLHKLDGKISLETMQELNYQVDNNLKEPSVVASEFLKAH HYFEGGKH >gi|269838509|gb|ACXB01000002.1| GENE 270 272634 - 273287 839 217 aa, chain + ## HITS:1 COG:BS_opuCD KEGG:ns NR:ns ## COG: BS_opuCD COG1174 # Protein_GI_number: 16080433 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, permease component # Organism: Bacillus subtilis # 4 212 1 209 229 245 68.0 4e-65 MQSMNIWQQLFYYFSHNGMYVLSEFSRHFLISIYGVILAAIVGIPIGIFIAKNRKISDWV IGLANVIQTIPSLAMLSILMLGLGLGVSTVIVTVFLYALLPIIKNTYTGMLNVNDAYLDA GKGMGMTKLQVLWMIEIPLSLSVILAGIRNAMVLAIGITAIGTFVGAGGLGDIIIRGTNA TNGGAIILAGALPTALMAIIVDLVLGALENRLRRRTL >gi|269838509|gb|ACXB01000002.1| GENE 271 273563 - 276268 2231 901 aa, chain + ## HITS:1 COG:YPO0451 KEGG:ns NR:ns ## COG: YPO0451 COG0474 # Protein_GI_number: 16120780 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Yersinia pestis # 15 896 11 902 908 692 41.0 0 MHTKSTSDDYGAGHSPSPHFYRLTTAEVAQILRTDPEAGLTATEAQRRLSVDGPNALTEK KTSNLTRFLKQFNNSIIYILIVAAIATFMLREYSDSIVIGMVVIINALIGYFQEVKASSA VDKIKQLLQVEATVVRDGQRLDVPAEDLVAGDLVFLEAGDHVPADLRIVDADNLKIQEAA LTGEADSVLKTPTALKEETPLGDRANSAFASTAVTNGSGLGIVVATAEQTEIGQISSSVK TVKSKTTPLMREINGLGKYISYGIVIVAMLVGIYGYLTKIYSLPVLVIALITMIVGSLPE GLPASTSVVLAMGINKMTKQNAIVKSLPAVETLGSVNVIATDKTGTLTKNEMTVESVVTK QHEFEVTGTGYQPEGTVCLNGQPVQLAEHPDLQKLILAGYYANDTELTQTDGQWQINGEP TDGAFLTLANKAFQQRVPEWTEVDMIPFDSDYRYIAELSQSATGEKLIYVKGSPDKLFEM VKDDPDFNLTEWYDRVSQIAQKGQRVVAVAYKKAPAEQTTLTHADLQNGMQFLGVAGIID PPREETIAALHDMRDAGVKVKMITGDHPETATAIAQKLGLDDQIRAITGAEIDRLDDETL RKVIQNYNVFARTTPNNKLRIVEAYQANGLVTAMTGDGVNDAPALKRADIGIAMGIKGTD VAKESADMILTDDNFATLSKAIREGRRVYDNIKKTIRFLLPTSFAEGLIVLLSIISQQEL PLVPTQLLWINMVSAITIQFAFLFEPAEEGIMQRRPRPAGRAFLNRADVIQIIYVSILIA GLGMVGFDWLRGQGISELVASTVTVNIIVFGKIFYLFNIRTPKPALSTDVFRNWHIFWII GVLLVLQLGLTYLPFMQAIFSTAAMSGMQWLIPVVAGIVVLVVTEVDKYFHPGHFKQVHA D >gi|269838509|gb|ACXB01000002.1| GENE 272 276301 - 276723 500 140 aa, chain + ## HITS:1 COG:L119891_1 KEGG:ns NR:ns ## COG: L119891_1 COG1136 # Protein_GI_number: 15672696 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, ATPase component # Organism: Lactococcus lactis # 1 136 1 136 290 182 66.0 2e-46 MSLLEVQNVHKSYYLGDEEFKVLKGINLKFDRGEFVSILGESGGGKSTLMNIIGGLDHQY EGDVVYNGQSLHSAKPKVLDAYRRENIGFIFQSFNLISHLNILDNVLVSLEMTSLSHAQR VARAKELLTRVGLKEHAETS >gi|269838509|gb|ACXB01000002.1| GENE 273 276790 - 278238 176 482 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163788031|ref|ZP_02182477.1| 50S ribosomal protein L9 [Flavobacteriales bacterium ALC-1] # 285 482 221 413 413 72 25 2e-11 MIIADEPTGALDSQNTQEVLEILASIAKDGKLVIAVTHSQEVADFGTRVVHLDDGVIHGE ANLRDPYPVPATEKGFQPKHLTFGDALQMALKHMGYNLKRNLLIIFGASIGIFSVILMLG LGNGVTGYMNDQISSQINPTAVQVSKNATPEQMQDGQGITMADADYRRFQKMDHVKSVER GYYLQSAKVVKEKKSTTLQVLQTWNKTERVNDIKYGHLPHANEILLDKASAKKLDKHYKN VVGKKVTIFVTTVDDQKRPVQLQKEVTVSGVITSGTSAINYNTLKGMFTDQKLSFSPNFL TVNVDQVTNVKDVQNKIKGYKHQVKGKQRATYAITGVGAILDSLNTYIMLAFYVLAGIAG ISLLVSAIMIIVVLYISVAERTKEIGILRAIGARRKDIRNLFVSEAFFLGLFSSVLGSVL ALLAQWGANQLSQKYIDFAIIGITPGYITFGVIISVVITLLAAFTPSRKASKLDPVEALA TE >gi|269838509|gb|ACXB01000002.1| GENE 274 278396 - 279739 918 447 aa, chain + ## HITS:1 COG:SPCC1672.03c KEGG:ns NR:ns ## COG: SPCC1672.03c COG0402 # Protein_GI_number: 19075374 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Schizosaccharomyces pombe # 26 445 31 445 527 229 34.0 8e-60 MGIINYKKIIKGSFFSAESTQKVNFVKDALVVIDEKGMIDDIVLPKEVKYRDLLVKARTA KKLIELADDEYLLPGFIDLHIHAPQWPQAGMALDKPLNEWLDEYTFPLEAKYQDTDFARK SYHHLVRNLVNNGTTTALYFGTIHEAANLVLAEECNQLGQRAFIGQVVMDNPEQTPAYYR NASTKTAINSTVNFIEKIQEKFSKAPIFPVVTPRFIPSCLDETLLELGKLARERNLLIQS HCSESDWEHGYVMDRFGKSDAKVLQEMDLLTDRSIMAHGTLLGEDDLAIFQQTHAAIAHC PISNAYFGNAVLPVRKILEKITVGLGSDISGGFSASIYRNIQQAIISARMLEDGVDNRVA AEQRGVANSRISAAQAFYMATVNGARALHIPAGQIKRGCYADLQIVRDGLAEVSSTAPTD IFSRLMYQTNPDDISKVLIAGNLVSQK >gi|269838509|gb|ACXB01000002.1| GENE 275 279762 - 281087 285 441 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 24 435 19 418 447 114 25 5e-24 MEEKHSNLFIGPDDKIGNGEASLLGLQHVLAMDVYVPPVILAMMLSMSFSEKMGLLQVAF LAAGIGTIIQTAVFMKMPISQGPSFVPLTAASGIVLASGGLQKGMATLLGALIVGAILLV LLGMSGVFYKIIQTLVPALVGGTIITCVGLSLIPTALNSNIFQASGNINQNIILAGITAV TLLISISISIHFPSLQRIFRTGAIIIALLAGTVAATMMGRFDWSTVKQAAWFSLPQGTVF HYGITFSPTAILTFIIIYAILTTETTGTWFAMGAVTNHQITNKQWNRGLIGEGISCLIAA LLGSTPVTGYSTNAGIISITGVASKRVFISAGIWFIVLGFFTKISAFLSAIPAPVIGGVF AIICVTIMLNGLRVIRNLQEKDGDIYVIGIPIVLTFALVLIPTTVVKEAPQMVQYLLGSP IAVAAMVAIILNLVMSTGKNK >gi|269838509|gb|ACXB01000002.1| GENE 276 281377 - 283008 1592 543 aa, chain + ## HITS:1 COG:BS_ykpA KEGG:ns NR:ns ## COG: BS_ykpA COG0488 # Protein_GI_number: 16078507 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Bacillus subtilis # 1 542 1 540 540 706 61.0 0 MITVTDMSMQFSDRKLYSDVNLKFTPGNCYGIIGANGAGKSTFLKILEGKLQPTSGNVSI SPNERMSSLNQDHYAFEEFTVMDTVIQGHQKLYQVMQEKDALYAKPDFSDEDGMKAAELE AEFAEMDGWNAEAEASQLLQQLGIGEELHYSKMSELTEGQRIKVLLGQALFGKPDILILD EPTNGLDPQSISWLENFLADFPNIVIVVSHDRHFLNSVCTMMCDVDYGKIELFVGNYDFW MESSALAKRLAENANAKKEEQIKQLQEFVARFSANASKSKQATARKKQLEKITLDDIKPS SRKYPFIRFNPARELGNDLVRVDKVSKSIDGVKILDNITFTIRPGEKAAILSRNDLATTV MMQILAGELEPDEGSVTWGQTTERSYIPRDINPYFTDENLDILEWLRQYADKEESDNTFL RGFLGKMLFSGEDVLKHVTKLSGGEKVRCMISKMMLSKANVLLLDDPTNHLDLESITALN EGLTEFKSSIIMTSHDHEFIQTTADHIIEVSDRGVVERADTTYDEFLKHDVVQQQVQQLY TDK >gi|269838509|gb|ACXB01000002.1| GENE 277 283162 - 283608 662 148 aa, chain + ## HITS:1 COG:no KEGG:PEPE_1648 NR:ns ## KEGG: PEPE_1648 # Name: not_defined # Def: transcriptional regulator # Organism: P.pentosaceus # Pathway: not_defined # 1 147 1 147 147 193 72.0 1e-48 MEQADISFIAQAYNKSIKLIGTLLESKISDPQVSFDMFMIMHIIEQSGSEPITLSEIAET QEVTKSAISRKVGTLLDLGLIEQKSDRVDRRKKYLTLTNRGREMYWKNDKIFKEMLDDVA KRYGKDDFLKTLEHINKIVEVIKDTMDN >gi|269838509|gb|ACXB01000002.1| GENE 278 283744 - 284655 1057 303 aa, chain + ## HITS:1 COG:L124727 KEGG:ns NR:ns ## COG: L124727 COG0697 # Protein_GI_number: 15672884 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Lactococcus lactis # 8 298 16 306 310 166 36.0 4e-41 MENNLTNKQVGKGIFWALIASCMWGISGTVLQVISQGESIPASWFLSARTSGAGVLLLII SFIKYQMHIFDVFKSLRTVLWLFAYAIFGLMANLLTFYMSVQEGNASAATILQYLSPLFI VLGSLIFKHERPMRSDLIAFVIAMLGVFLAITHGNIHSLAISNSALIWGILSGVTAAFYV VLPKPITKDHSPMIVLGWALIIGGILFNIHQPVWVNTPEITTRLVLSMATVILVGTILPF WALLHSLNFAPSAVVSILDAVQPVVTFVLSLLFLNLKFNITELIGSILVIVAITIIQKFR SEP >gi|269838509|gb|ACXB01000002.1| GENE 279 285044 - 285469 422 141 aa, chain + ## HITS:1 COG:Cgl2319 KEGG:ns NR:ns ## COG: Cgl2319 COG0105 # Protein_GI_number: 19553569 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside diphosphate kinase # Organism: Corynebacterium glutamicum # 4 138 3 134 136 139 53.0 2e-33 MSEERTLILIKPDGVQCGHVGHVLSRIENRRYELKALKMINATKEQLRQHYSQLVDKPYY PGIEEFMTSGPLVAIIAEGDEIIETFRKMAGPTNPSEAMPGTIRGDFARAWGPGPIKNVV HSSDSRESAEKEIKIWFPERN >gi|269838509|gb|ACXB01000002.1| GENE 280 285946 - 286368 553 140 aa, chain + ## HITS:1 COG:TM0374 KEGG:ns NR:ns ## COG: TM0374 COG0071 # Protein_GI_number: 15643142 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone (small heat shock protein) # Organism: Thermotoga maritima # 5 140 2 144 147 67 31.0 5e-12 MANEMMNRRNDMWDPFFDRLARGFFNDSWNATPTSLKTDVSESDKDYNVKIDVPGIDKKD IKLNYQDGVLNVEVKKDSFADHEDKEHNVTMTERNYGIMHRSYSLPGVKASDIKAKVNNG VLSITLPKTNDDSSSGIEIE >gi|269838509|gb|ACXB01000002.1| GENE 281 286687 - 287367 686 226 aa, chain - ## HITS:1 COG:lin0158 KEGG:ns NR:ns ## COG: lin0158 COG2200 # Protein_GI_number: 16799235 # Func_class: T Signal transduction mechanisms # Function: FOG: EAL domain # Organism: Listeria innocua # 2 215 3 229 232 62 23.0 7e-10 MFRFFIQPQLNTVAQSVLGYELLIKQYRDGAWRMPKSFSAIPAKTMADTLIATVKELSLK VGSVSVNVDRHQIQDQHLIHALIMAQAVLRPVKLVIELIEDAVNPAVTNQELIPTVQNLN DLGIQFCLDDVGSGINTWPEIKSLLPYTSELKYALQNYKEHLSETNAEHHVAFWQKIAAE HKMRFILEGIEDDQDDAWADRMKIDLRQGYYYGKPALMKIYDSDPD >gi|269838509|gb|ACXB01000002.1| GENE 282 287543 - 288889 1219 448 aa, chain + ## HITS:1 COG:TP0921 KEGG:ns NR:ns ## COG: TP0921 COG0446 # Protein_GI_number: 15639906 # Func_class: R General function prediction only # Function: Uncharacterized NAD(FAD)-dependent dehydrogenases # Organism: Treponema pallidum # 1 438 1 440 445 265 33.0 1e-70 MKVAIIGCTHAGTAAVREIIRQDPTTEVNIYERNDNISFLSCGIALYLNGRVKQLEDMFY DSAEDIRTENIHVNLRHDVIRINRQKKELMVQDMDDFTVKREKYDKIIMCTGSMVSLPPI KGVNHARVMLCKNYEQAQLLHEKVKDARRVALVGGGYVNVELAESLVDTNHEVTLFQSHE DILNNYVDTPLSAKVIKLLNDHHVKVETNSKVASFTDKVSELLITTADGREFATDVAVVS TGFVPVTDLLRGEVKMDRRGAIITNEYGQSSDPDIYVAGDLRTIHYNPTNTPEYIPLATN AVRQGTLAGINIFGNQWPEMGAQGTSAIALFGHTLAMSGLTYQRALNAGIDANYVLFEDN YRPEFMPSTTKITSIMVYEKKSLRILGAQFYSKHDVSQSANLISLAIQNQNTLKELAFVD MLFQPYYDRPFNFINLAAQAGLRKIGLL >gi|269838509|gb|ACXB01000002.1| GENE 283 288919 - 289473 495 184 aa, chain + ## HITS:1 COG:lin0669 KEGG:ns NR:ns ## COG: lin0669 COG0110 # Protein_GI_number: 16799744 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Listeria innocua # 3 184 2 183 187 206 51.0 3e-53 MSKTERAKMTAGEPYQQFDPELIERRKFIRQRIQQLNQEVDNERRNQGFKKLLGDVGDDF FVESDFKFDYGWNIHIGNHFYGNYDMTFLDTCSITIGEHCYFGPNVGLYTPIHPLDPVQR NADVEMGAPITIGDSCWFGGRVTVLPGVTLGNNVVVGAGSVVTKSFGDNVVIAGNPARII KTID >gi|269838509|gb|ACXB01000002.1| GENE 284 289678 - 291246 1292 522 aa, chain + ## HITS:1 COG:SA2408 KEGG:ns NR:ns ## COG: SA2408 COG1292 # Protein_GI_number: 15928201 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Choline-glycine betaine transporter # Organism: Staphylococcus aureus N315 # 17 477 32 499 540 267 31.0 3e-71 MVLFGIVSIILIIGGPAVQQLMNALLSFVTSKYEWMYISIYVINFVFFLFLIFSKYGKIR FGKADPDHDFSGFQWGSMVFATAIDASILMLSASDPLQYLQHPAFGAKPLSKAAFAYANV VGEFNWGPMAWMMFGTATIAIGYTMYVKKIPVRRLSTVIPVLRGDQLYKKVLRQLIDFLV VFGIMGGIGSSIGMEIPVIARVLSIIVGIKDTLYLKLFLFFILLILFSLTVYAGLNKGIK KLSAWHIYLAIIFLAIVLLVGPTKFLIGSEGQTLKLMGQHFTALSFNKANAGTNGFAQHQ TLFYWGWWLAYMPVMGLFIARISHGKTIRQIIIGMMTYGVGGCLSFYAVLGGYALWLQQS GTLNIVHILNTQGQAAVQAALITTLPMSKLMLILFCVSCFIFLATTISSSAFIVSSFTSL DLSNGRQPSRWNRMTWVIVFIFFSLGIVIVGGFEVVQAICTVAGFPLIFVCALLLYSIYK DVTSYAPMQAKVPSYLPVVHLRPMQRLVFNHLLLHNLGQDDF >gi|269838509|gb|ACXB01000002.1| GENE 285 291318 - 291791 422 157 aa, chain + ## HITS:1 COG:SPy1642 KEGG:ns NR:ns ## COG: SPy1642 COG1854 # Protein_GI_number: 15675515 # Func_class: T Signal transduction mechanisms # Function: LuxS protein involved in autoinducer AI2 synthesis # Organism: Streptococcus pyogenes M1 GAS # 4 157 7 160 160 242 71.0 2e-64 MAKVESFELDHTKVKAPYVRLIAVEEGSKGDQISNFDLRLVQPNENAIPTAGLHTIEHLL AGLMRDRMDGIIDCSPFGCRTGFHLIVWGTPTTTEVAKALKGSLEAIADDIKWEDVPGTD IYSCGNYRDHSLFSAKEWAKKILADGISDQPFERNVV >gi|269838509|gb|ACXB01000002.1| GENE 286 291964 - 293160 1092 398 aa, chain + ## HITS:1 COG:L125116 KEGG:ns NR:ns ## COG: L125116 COG0477 # Protein_GI_number: 15672105 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 4 379 2 370 387 266 44.0 5e-71 MDAKNKKTLWILIAGNLLICLGIGLVIPVTPFIKNYYHYSTTQMGIMTSLFAFSQFIASP LVGRLSDRIGRKPLIVAGLFLYAVSEVIFALSNSLIWFNVSRVIGGLSAALFVPTSMALA ADVTTPAQRARVIGWISAAFSGGLILGPGIGGVLANISYKTPFWAAAALGLISTIFTYAV MPKMEVIREIAHEEHDDEPQAVKKTGALRDVLTAPLIILFTMIFVAAFGLQGFESIYSIY VNQVFNFGLGTIALVLTFNGIFSLILQVFIFDWLVRKMGEVNLIGACFLIGAIFVFWITQ AHTQIEVIIATLVVFSAFDILRPAITTLLTKEGKNNQGLINGLNMSLTSVGNVIGPILAG MLMDYNTHIPYLLVALILFISYGITFAVKCVMKHEAQY >gi|269838509|gb|ACXB01000002.1| GENE 287 293389 - 293649 75 86 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MRDCDTYSTPQLFPINQNKAPIAFYAFGALTFNGFITMLIAKMCSSLQGSAVNQISRLIW LILKPYPKASALYFLHAILPASLHFP >gi|269838509|gb|ACXB01000002.1| GENE 288 293576 - 295003 1428 475 aa, chain - ## HITS:1 COG:CAC0694 KEGG:ns NR:ns ## COG: CAC0694 COG2211 # Protein_GI_number: 15893982 # Func_class: G Carbohydrate transport and metabolism # Function: Na+/melibiose symporter and related transporters # Organism: Clostridium acetobutylicum # 15 460 4 442 449 197 32.0 5e-50 MDKTQKTVTIDAAPFNIKDKVGYMFGDIGNNFSFNVVNSFLMIFYTNVLGLTGAQVGILF LIARFVDAFADITVGRLVDNSKLHKSGRFKPWMSRMQYPLLIFLVLLFVPVVKDWALPVR LVFVFITYLGWGIFYSCVNIPYGSMAAAISSDPNDKTSLSTFRALGSALGSAITSYIIPL FIYIGATQKISGTRFFWVVVVCAFLGWGCYELTIHLTTERIRTEKSAKVPLSRLVQGMFE NKALIVLVLIDIMIVINQNLSGTMISYLFNDYFKDKAAMSIALIFNFATVILLAPFSNFL TKRFGRKETSIVALLFGALMYGILLVVHTQSTSFYLIMLFFGSLGAGMFNLMVWAFITDV IDNHEVLTGVREDGIVYGVNSFARKVAQAIAGGFGGFMLTFIGYQSSTGGGAEQSVTVIH RIYNLATGIPTVCLSVAALLLLFFYPLNKKRVTENARKLEELHEENRVRKPSGKA >gi|269838509|gb|ACXB01000002.1| GENE 289 295289 - 297784 1736 831 aa, chain + ## HITS:1 COG:YPO0848 KEGG:ns NR:ns ## COG: YPO0848 COG1501 # Protein_GI_number: 16121156 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-glucosidases, family 31 of glycosyl hydrolases # Organism: Yersinia pestis # 1 777 2 780 792 539 38.0 1e-153 MKTSTKVLEINNQNDFLDVITNGARFRIYLLDENIIRIKGTFADDFAPEQSYALVKTAWA DATDELFGDERQRVSPISITVTELADHYCVTNGKYVLNIFKEPFYFEIVDENGRVVHQDL PNRAFVKDDFGREYHYSRMGDTNKFYGFGEKSGKLNKFKRRMRMHNTDSLGWNAQKSDPL YKMIPFYIDFDPAKQVASGLFYNTARDSVFDMDCEHSNYWLQYSYFQCDGGDLDVFFIGG PTIKKVVEHYTDLTGKSAMVPMASFGYMGSTMFYTELAEHADDAIIDFVETCKQNDIPCD GFFLSSGYTSGKDGKRYVFNWNKKRFPDPQKFVAELKARGVLLAPNIKPGMLTTHPLAKN FQQKAAYVKTADGQASQTDQFWGGSAYFVDFTSADGRAAWKTEMKKALISLGITSIWNDN NEYEINDNQAQVDAEGLHRTIGEVKPVMSTMMAKAAQEAINEAAPDQRPYLINRAGFAGI QRYAQTWAGDNYTSWTNLKYNIPTILGMGLSGVANQGCDIGGFDGPLPEPELFVRWVQNG IFQPRFSIHSCNTDNTVTEPWTYPAYTHYVRDAIKLRYSLIPYFYALLDEAATVGSPIMR PLVYEFQEDPQVAEESFEFMLGPALLVANVVEPQQTTKAIYLPKGARWFDLHTHQYYDGG QTITVPVDLSSIPMFLRSGGILPTSPGLHNIHNEPVEKLRILVEPSEAGKFTLYEDDGIS NDYQTGDLLRTHIQVTPGSQGVTLDFQREGSYATKVKELELVVGCPTVAPVAVMIAGNEV PRYLNAARFATAVEGWYYSGETKQTTIRFANPDAVKFSVAINFSVKDLISI >gi|269838509|gb|ACXB01000002.1| GENE 290 297928 - 298482 542 184 aa, chain + ## HITS:1 COG:no KEGG:PEPE_1634 NR:ns ## KEGG: PEPE_1634 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 166 1 144 155 140 43.0 2e-32 MLNKFSRYADLKQVALTLIEMDAVPNVELRLAQIIARGIDDTFIPENVNPEEIDEYLRTR ALHFWFYPSMHMNKVVPKLAREVADKWEIQQGDKPMLEACLETVMSYYPDAADYKVDSTL VTSDEIDPYQTHPIDTNLGIYLASNPATEGLATIDGFDVAKINGYLNSQGIPGIPGVRLK RSRA >gi|269838509|gb|ACXB01000002.1| GENE 291 298917 - 300719 2015 600 aa, chain + ## HITS:1 COG:BH2856 KEGG:ns NR:ns ## COG: BH2856 COG1164 # Protein_GI_number: 15615419 # Func_class: E Amino acid transport and metabolism # Function: Oligoendopeptidase F # Organism: Bacillus halodurans # 1 599 1 598 598 426 39.0 1e-119 MAKKQPTRAEVPVDLTWNVADIFATETDFHDAITAVKSQIEDIQKLAQKGIQNAHDLLAA TKLLYESEEAVLKIYGYAARVNDGDTADPHGNDLLNQALLVLNKWEAAVAFYDPAITSLS TEQLDQFLKTEPALKQYEFNLRRVQAQAAHTLTPSEEKLLAQLQPAIDDAAEISAKLDDA DLDFGMIKDENGEEVQLTNATASEFALSPSQEMRMKASRQVAKAYRSMRNTFAAALRSHV HAQNIMAEIRHFKSAREMNLSDQKIPETVYDTLIETTHEHLDLMHDYYAFRKSFLGLKDM YQFDRHVPLVADAKLSLSFEEGKKATMAALAPLGKDYQAHLQTEFDQRWIDVAENKGKRS GGYEDDVYGVHPYILLNWNDIYDSTSTLAHESGHALQSVYTDQAQPFWYSQYPIFIAEIA STLNESLLNHYMLEKHADDPQIKAFILTQDVDNFIGTVYRQTLFAEFEHFIYTEDAKGTT LTPDLMAQKFNGLFKTYNGAAVSDLPWKDDTWAQIPHFYYDYYVYQYATSKAIATALADD IINQKPGAVERYKEFLSAGASDYPVEIVKRAGIDVTKRDYLDQAFVDFGDKVKELKELLK >gi|269838509|gb|ACXB01000002.1| GENE 292 300958 - 303081 1597 707 aa, chain + ## HITS:1 COG:no KEGG:llmg_1503 NR:ns ## KEGG: llmg_1503 # Name: not_defined # Def: surface protein # Organism: L.lactis_MG1363 # Pathway: not_defined # 22 703 30 706 730 620 52.0 1e-176 MTNNLRYIIRKCLVIAGAIIATLLITTQLAMAAQTTGDKNVRGVAFEWGNSTWVLADDGE LISAGGDIGQAPPLHDVLSNNGIEPGQVKSIEFAKTTSAHDITGLLGYLPNLQKISKLGN LNYSGSAEQMFREDMALTEADLNDFDTSKITSMKYMFLKTGFKTMDLSNFNTSHVTDMLG MFDSTYYLNKLDLRNFNTSKVKIMTFMFYKSNISEVYLDSFDTSNVTDMMQMFYYDNNLT KLDLSNFNTSNVSIMEEMFEGTTNLKTVNMSNWDTSKVTNMNRMFSNVGVEKLNLTSFTI NKDTITTNMFVESNNLKQLILGKKSQLKSNMNIPDVPTTDGYTGHWQNVGTGTVDEPAGN HVWTSTELMSNFDAPTMGDDTFVWQRKPATINIGETTDYKNDPVLSKYVPTAVDPLHPYR YNVVLNNDYPFYTKVEDGQTKKDNVANLGDKSGATVYSQAEMPATYTYATGKRAGQATKF IKVSFDGNQWYWVDQHALNLDLKSRYPAVNDEGIALIDDQFLGSTNTYGIISGDFNSQMI DNAYNPDGQIIYQSFAKESDFANEKDPAQALKAFNDNLDRATKSWNDALGEKVFIKATDT DKRVTLKVVANPQGAGSATLSGNTGIDASLVEKGALDPDGENYDINVLFITMRHELGHSL GLNHTSNGQYYGMPDGYRMNIDDDAMNAILVYDKYSFYPYSQKNRYP >gi|269838509|gb|ACXB01000002.1| GENE 293 303397 - 304248 451 283 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0070 NR:ns ## KEGG: PEPE_0070 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 2 277 1 264 265 169 36.0 1e-40 MLDKVHVYKLIEHRIWMLITRTSSVSYPMAITLDGGDKDSIEAFFAVVFHENGRLEIPTK VGFIPNEYGSWDFDENTQEIIFVNSKDQSEIRASLPEPLPYGDNVIAIKLKNGSPDSTAE TLFVNAPHLNHPKITHQQISSRQVLLVPRKEFSFSLYKKLRWSGISVKLVDCEQGLLSFL HEAYEYLANHPRIENVVISRKNRLFIKFAQGYQLAFLNNQGLVSFDYLSGSRQVVMEFLI VVLTENNLRLFDEANSRDEETMLQDILNKQFYQRYKLIDLPNP >gi|269838509|gb|ACXB01000002.1| GENE 294 304368 - 305234 643 288 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0070 NR:ns ## KEGG: PEPE_0070 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 2 284 1 264 265 156 28.0 9e-37 MLNQETIKALLCHRYWFFRFTEADAPYESRPGVMFLGGNIDDQCSYFIIEFRENGRIKFP TNLGYHPTDYHSWIFDEEKQEIIIISEDGRLEKHLQPPKKGYYGGNVITINPEDAGNSDN IEFFINLDHYNAWNVTQRTLGGESVVFVAESQFNRTLTQHFARRAYSVHLVENYTNLMGF LKEVCEYIMEHPHVKNVIIAPNGDGNIPIEFPKEIDHVLFANNTKKSTSFSFDYCAGKRS IMVELLLTIIGEDSKRLLNPDDHRSEEDALRNTITNIFASRYEVGSGM >gi|269838509|gb|ACXB01000002.1| GENE 295 305383 - 305982 387 199 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0069 NR:ns ## KEGG: PEPE_0069 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 194 1 193 243 224 57.0 1e-57 MQVEPNVVITEFIINMDNVYHNFDNTNLDVAKQVSEQTESLAKFNVPFYVLTNSPDQVKD DGNFHIVNVDLFQHYPGLTIFFHRLLMAFDFLQAHPEIEKAVITDASDVTMLNYPFDNMK DGTLYMCDQWDIMGDSDVLSYNDSPRFIKKFIAENQLLPTVNMGIIAGSRSILIEYLGII FKIIAESSLKVQQGTLLPD >gi|269838509|gb|ACXB01000002.1| GENE 296 306251 - 306763 329 170 aa, chain + ## HITS:1 COG:no KEGG:LACR_1170 NR:ns ## KEGG: LACR_1170 # Name: not_defined # Def: hypothetical protein # Organism: L.lactis_SK11 # Pathway: not_defined # 39 158 40 160 809 103 47.0 3e-21 MACKRIFIWKVCFVIIVSFFSGLLFLTHLSKAAETNLATKNVKANSFVWGKAEVVLANDG ELIVASGDIDSSPALHDVLNSNGIDPKTIKSIEFTQPTSAIGTFNMFGYLPNLQKIIGLD KLKYSGTAGGMFRDDTSLESINFNNFDTSEIFDMGYMFLNSGQRIGFIFI >gi|269838509|gb|ACXB01000002.1| GENE 297 306792 - 308249 1125 485 aa, chain + ## HITS:1 COG:no KEGG:llmg_1503 NR:ns ## KEGG: llmg_1503 # Name: not_defined # Def: surface protein # Organism: L.lactis_MG1363 # Pathway: not_defined # 1 466 236 729 730 466 51.0 1e-130 MFDNTQSLTTLDLTGFDTSKNTSMKYMFFGAGVKELDLSSFDINNTDTSDMFTNARMLRQ LTVGKKSQLRENMNIPDVPTSDGYTGHWQNVGNGTVDDPAGSHVWTSTELMSNFDAPTMG DDTFVWQRKPATINIGETTDYKNDPVLSKYVPTAVDPLHPYRYNVVLNNDYPFYTKVEDG QTKKDNVANLGDKSGTTVYSQAEMPATYTYATGKRAGQATKFIKVSFDGNQWYWVDQHAL NLDLKSRYPAVNKQGVGLIGDQFLGSTNTYGNYDMDVNSQMIDNAYNPDGQIIYQSFAKE SDFTAEKDPTQALKAFNDNLDRAAKSWNDALGQSVLIKATDTNKKVTLKVIANPKDAGSA TLSGNTGIDAGLVKWALDPNDQYYEINLLFITMRHELGHSLGLDHTSNGQYYGMPDGYQF SIDDDVMNAILHHYENGHPNTQKTITKEDVSAIKLILSNHNFENPQPQTKKVVTTKQIDR AVSKP >gi|269838509|gb|ACXB01000002.1| GENE 298 308564 - 309385 411 273 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0070 NR:ns ## KEGG: PEPE_0070 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 2 266 1 264 265 223 40.0 6e-57 MLNKEEVKDLICNRFWKYREITPKKTFTTLFIGTKAGSGMLALCFRRNGRITFPTNVAFE PDEYRYWDFDEDTQEIVFLNNQNQISRRAKLPVRWFGGGFKMQLISDKNEVFSHEPHVDK YAIKKRIIGGTHMFFCPRSVYEFELFQDLAFLNFDIKLINAKNSIIDFFNEVYRYLIVHP QLEEVVISQVGQPIVELSEEEKILFANKDNQPSYKYFSGERALVLELLTVVLSENNKRLL NRDDYRNEEEMLQDIILNKFANRYEIAEVFAPK >gi|269838509|gb|ACXB01000002.1| GENE 299 309399 - 310130 708 243 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0069 NR:ns ## KEGG: PEPE_0069 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 243 1 243 243 297 62.0 2e-79 MKVEKNIVISEFIVNMYDPHYGQDNSHVDIPAKTKTQAESLSQFHVPYYVLTNSESQESD TGAHIVHMDLFSHYPNLTLYFHRILMAFEFLQKHPEIEKAALTDAGDVTMLNYPFDKVEE GILYMGDESFYIFATPVITWHKDLQCIEDFIRENGLLPTLNLGVMVGTRAVLIEYLGIMV KLITDAQLKISQGDDAYQLSDVEMAISNYVAYKYFGERLIHGREVTTIMDGYQEPSSAWF KHK >gi|269838509|gb|ACXB01000002.1| GENE 300 310274 - 311035 439 253 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0070 NR:ns ## KEGG: PEPE_0070 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 248 16 262 265 179 35.0 1e-43 MYNIVTDNNDFVLVFIGRGPTDGFLAIQFEPDGRITFPNNLAFVPQEYAHWDFDEEKQEI LLIGTNGQISARGKLPVNWLNDSLKIQLFDGKDGIFISDTRIDAQQTTNRVLGGKNMYFT PRQSFNMELFHDISRENFNLKVLDYQGSILNFFDKIYEYLAQHPQLEKVVIAKDGQPVVK LPEENQLVFLEDDQRPSFTYFAGNRARIMELLILILSENNKRLLNLDDHRTEDELLLDTL NKQYQDRFTLAHI >gi|269838509|gb|ACXB01000002.1| GENE 301 311152 - 311340 69 62 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSDSFKYKLRVTTRKTSGVRVPSIPLIATTRKYNHSKSYTMFSIVVILRRVYEMKKSFKV IV >gi|269838509|gb|ACXB01000002.1| GENE 302 311855 - 312712 488 285 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0070 NR:ns ## KEGG: PEPE_0070 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 3 282 1 263 265 163 33.0 7e-39 MILDKNEVKDLICNRLWFFQFVLKEKLYDIHAGILSLKIDPDDEFSYLTLKFGENGKIDF PTRLGFIPSDYYKWDFDVDTQEVVILSKDGQAEKRLQLPQKEFYYNVDTMVFNKDDKGNS KNVEFLLNFPHYDAFEIRNPTIAGQTMIFIPRDHFKQGVTQHFARRGYPVYPVDHQNDLT EFLQEIMECLMDQPRLTNVIISRNATSELDINLPKELNHVLLASSEITTAFDYCAGSRAV VMELLTTVITENNKRQLSPDDNRTVNELLGEVLHNKFINRCEYLQ >gi|269838509|gb|ACXB01000002.1| GENE 303 312725 - 313459 457 244 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0069 NR:ns ## KEGG: PEPE_0069 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 244 1 243 243 278 57.0 1e-73 MQVEPNVVITEFIINMDNVYHDYDNTNLDVSERVKEQAQSLAEHDVPFYVLTNSPDQAVD KDKFHIVNIELFQHYSGISIFFYRLLMAYDFLQAHPEIEKAALTDASDVTMLNYPFDNIQ DDTLYMGDEWGLLGDTWIINTNNSPYFIKKFIAEHQMLPTVNMGLIIGTRAILLEFLGII LKLITESSLKIQQGDESAALGKYDMEIGNYVAYRYFADRLVHGREVSTILQGFQSTSSAW FKHK >gi|269838509|gb|ACXB01000002.1| GENE 304 313511 - 314362 424 283 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0070 NR:ns ## KEGG: PEPE_0070 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 2 277 1 264 265 180 37.0 5e-44 MVNKIQAYQLIRNRLWILQHRAHKSAAPEVITFAKEEDDSFVGFFSVIFHENGELEVPTN VGFVPKEYGKWDFDETSQKIIFVGTDGKPKIRASLPEKLPYGSDTSALKLQLSSSDNDSE NMFINDPHLDHFAITKRTNKTYRTFFIPRTAFDYPLFGLLRWNGFNVKIIDHAKKTLDFF NGVYEYLVLHPQIEDVVISRQNIPKTAFSTEHKLAFQSKQNQVSFDYLSGKRAAIIEFLV MVLSEDNLRQFGVGDQRDDETMLYNVINTYFSGRYDLIELSNL >gi|269838509|gb|ACXB01000002.1| GENE 305 314394 - 315248 378 284 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0070 NR:ns ## KEGG: PEPE_0070 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 2 277 1 264 265 179 37.0 1e-43 MLDKAQVYQLVRNRIWILQYRKSKFNQPVLLTLIGNKELSDEIFFCIIFHENGRLEVPTT VGFVPAEYGSWDFDEKTQEILFISKDGQFQTVASLPESLPYGDKLVAMQIKTPLPNDARI RMFVNDPHLDHFAITKRSVENHQTYFIPRENFEYSLFGKLRWLGFNVKIIDHGEKLLNFF NEIYEYLIRHPQIEDIVISSNNVSETIFTAERTLAFRKEHNQAAFDYLSGKRTVIIEFLV MVLSENNLRLFNDNVQHDDVTMLQNLLTTKFEDRYKLIDIPNFN >gi|269838509|gb|ACXB01000002.1| GENE 306 315265 - 316008 643 247 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0069 NR:ns ## KEGG: PEPE_0069 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 247 1 243 243 296 62.0 4e-79 MQVEPNVVISEFFTQMDDLLHHEDTSDIDISSKVAKQTESLARFQVPYYVLTNEPSQEKK GNLNIIHVDLDNIYRSYPDMTLYFYRIFMAFYFLQAHPEIEKAVLTDAGDVTMLNYPFDN IKDNTLYMGDETTFLFYSWLVINDENPQYIKDFIFENANSLPTLNLGVMAGTRATLIEYL GIMVKLITEAKLKFKKGNKDYQIGHYEMAISNYVAYKYFSDRLVHGREVSSLFFGYQKHS SAWFKHK >gi|269838509|gb|ACXB01000002.1| GENE 307 316296 - 318440 1442 714 aa, chain + ## HITS:1 COG:no KEGG:llmg_1503 NR:ns ## KEGG: llmg_1503 # Name: not_defined # Def: surface protein # Organism: L.lactis_MG1363 # Pathway: not_defined # 26 696 34 729 730 610 50.0 1e-173 MKQKSSVIVESFVLIFFAIIFILFFTTSARAAADSNVRGNAITWGDSYWTLANSGELILA NGEIGHAPALNKVLEDNGIDPKTVKSIEFTKPTSANSIVGMFGHLPNLQSIEGLDKLAYS GNAAQMFRGDSAIRSVDFNKFNTSKITNMTYMFWGAGFENLDLQNFNTSNVTSLYGMFNG TSNLRTLNVSNFDTGKVNSMDYLFYGSGIVELDLSGWNTSNVTSMIQMFYNCRNLDSVNV TSFDTTKVTSMYEMFSGAALTKLDLSSFKIEQIETTKMFSNARNLKQLKLGKKSQLSSDM QLPEVPSTGMYTGHWQNVGVGTVDEPMGDHIWTSAELLKNFDAVTMGNDTFIWQKRASSK INTGTVSDYATDEMLTKYVSTASKPLRPYRYNVVLNNSYHFYTKVEDGQSENENQADLGD RTGATVYNQAEMPVQYTEGDRDGEKTKYVKVSFDGEKWYWVDQHALNLDLKSQYPKVNGE GAALLDDIFLGSTATFGFGGSSDRVNSQMIDNAFNSEGKIIYKSFAKESDFTTEDDQNKA LKAFNDNLDRAAKSWNDAIGATILVKSSTTNERVSLRVGANAAGAGSQTLSGNTGIDSKL VEHALDPNSKNYEINLLFITMRHELGHSLGLEHSSNGQYYGMPDGYRFAIDDDVMNALLV YGSSNDYYPYTQKVITKNDVNAIKLILANHNFENPQPETKITNFTKKVDRAIEK >gi|269838509|gb|ACXB01000002.1| GENE 308 318673 - 319392 687 239 aa, chain - ## HITS:1 COG:lin1574 KEGG:ns NR:ns ## COG: lin1574 COG0580 # Protein_GI_number: 16800642 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) # Organism: Listeria innocua # 1 238 2 239 272 280 62.0 2e-75 METSLWMQLVGEFVGTFILILLGDGVVAGVTLKKSKAEGAGWIAISLGWGLAVTLGVYTS AFLSPAHLNPAVTLGMAMAGKFAWANVIPYCVAQTLGGILGGVCVWIHYYPHWQVTKNAD DIRGIFATGPAIRNYAMNFISEVIGTFVLVFALLAFTRGNFTDGLNPIVVGILITAIGLS LGGTTGYAINPARDLGPRIAHAILPIANKGNSDWAYSWVPVFGPMIGGALGALLFNVLP >gi|269838509|gb|ACXB01000002.1| GENE 309 319407 - 321230 1981 607 aa, chain - ## HITS:1 COG:SP2185 KEGG:ns NR:ns ## COG: SP2185 COG0578 # Protein_GI_number: 15901992 # Func_class: C Energy production and conversion # Function: Glycerol-3-phosphate dehydrogenase # Organism: Streptococcus pneumoniae TIGR4 # 1 607 1 607 608 712 59.0 0 MSFSLLSRRQDIERLKNETLDLLTIGGGITGAGVAIQASAMGMNNGLIEMQDFAEGTSSR STKLVHGGIRYLKNFDVEVVSDTVKERAVVQGIAPHIPRPDPMLLPIYDEPGSTFNMFSV KVAMNLYDQLAGVTDPKYTNYTISKEEVLQREPQLNPDKLMGGGVYLDYRNNDARLVIEN IKKAHENGGLMVSHVKAQHILHDENGNVNGVNVKDLLTGEEFDIHARLVINTTGPWSDFI REMDDQLEVTPQMRPTKGVHLVVDRSRLNVPQPTYFDSGQQDGRMVFAIPREGKTYFGTT DTDYQGDFLHPRVEQADVDYLLKTINDRYPEAEITIDDVEASWAGLRPLIASNGSSDYNG GNSGKITAQSFDEVIAIVDKYEKQLVSREDVEDVLNHLESTLSENKPNPSAVSRGSSLDV AQDGLITLAGGKITDYRKMAAGAIALIAKLLKQRFNRNFNSIDSKHLQVSGGDIDPQNVD ATLSFFAKQGIESGLSKPEAEKIANLFGSNAARVFSQIGRLPAAPGLSLAETISLHYSME EEMTLTPVDYLLRRTNHLLFHHDAIADLQQGVVDEMARYFSWSAEQKQQHSQELQDVIAE AHLDYLR >gi|269838509|gb|ACXB01000002.1| GENE 310 321250 - 322764 1140 504 aa, chain - ## HITS:1 COG:L0014 KEGG:ns NR:ns ## COG: L0014 COG0554 # Protein_GI_number: 15673228 # Func_class: C Energy production and conversion # Function: Glycerol kinase # Organism: Lactococcus lactis # 5 497 6 498 498 775 74.0 0 MADKYILAIDEGTTSTRAIIFDHAGRKVADAQREFTQYFPKPGWVEHNANEIWNAVSSTI ANAFIDSGIKPSQISGIGITNQRETTVIWDKKTGLPIYNAIVWQSRQTADIADQLIKDGY GDLIHQKTGLVTDAYFSATKIRWILDHINGAQERAERGELLFGTIDTWLVWKLTDGAVHV TDYSNASRTMLYNIHELKWDSEILQLLNIPEAILPEVKPNSMVYGKTKDYHFYGSEVPIA GMAGDQQAALFGQLAFEPGMVKNTYGTGAFTVMNIGEQPQLSDNNLLTTIGYGINGKVYY ALEGSIFVAGSAIQWLRDGMQLFKKASDSEAAALASQNENEVYVVPAFTGLGAPYWDSDA PGAVFGITRGTTKEDFIKATLQSLAYQSRDVLDTMKRDSGIDIPAMRVDGGASNNNYLMQ FQADILGIEIHRAHDLETTALGAAFLAGLAVGYWQDLDELKAEYQPGKIFKPQMGEEERR DLYQGWQEAVAATRNFKHQPRKAN >gi|269838509|gb|ACXB01000002.1| GENE 311 323031 - 323660 800 209 aa, chain - ## HITS:1 COG:CAC1776 KEGG:ns NR:ns ## COG: CAC1776 COG1011 # Protein_GI_number: 15895052 # Func_class: R General function prediction only # Function: Predicted hydrolase (HAD superfamily) # Organism: Clostridium acetobutylicum # 1 193 1 194 217 103 28.0 2e-22 MKKVVSFAGFDTLFNVQPFYEAVGRIGNCYDIDEKKVRDTYRQKERALMQQGEFMKYSKL MEVALNETAEELNFTIDPSDFSDVLIAHTVMEPFPDAPTALYNIKEKGYETVLLTNHSKD LIQANVVKLEHNFDQIITAEDVQAYKPNARFFAYVAQQLGDVDEHVHIAVDPTKDIQPAQ AAGWQVIQIDRQDDNAKVASLMDAVDQLG >gi|269838509|gb|ACXB01000002.1| GENE 312 323795 - 325318 1297 507 aa, chain + ## HITS:1 COG:SP1157 KEGG:ns NR:ns ## COG: SP1157 COG0038 # Protein_GI_number: 15901022 # Func_class: P Inorganic ion transport and metabolism # Function: Chloride channel protein EriC # Organism: Streptococcus pneumoniae TIGR4 # 30 483 42 499 516 307 45.0 3e-83 MHLKIEDTRLSTLLNSVVVGGLIGLIVSIFRLAIEKLLIFFQQLYQNFSTDWQWIVLLNL ILAVGVGWLVKTTPDISGSGIPQIEGQLSGEYEEQWWPVLWKKFVGGILAIGSGLMLGRE GPSIQLGAAVGQGWSETLRYRGSQRRVLIAGGAAAGLSAAFNAPIASTLFVLEEIYHNFS TLVWISALTSAVVANFISLTFFGLTPVLAIVYPHALPLNLYWHLLVLGILLGLFGRLYQI CTLKLKTWYGKIKFLPRWLDSLVPFILIIPVGWGWPSYLGGGNTLITTIAAQNPVFVTLL ILLVIRFVFSMVSYGSGLPGGIFLPILTLGAVSGALYVSIMAHWGLIDARYLPNFVIYAM AGYFASIGKAPFTAILLITEMVGSLQHLMPLAVVALVAYIVLDLLGGEPIYESLLHQLVP DILAEPQGRQERVEVFVKEGSQFDGAAVRNAQWPAHSLLISIQRGPRAIVPSGDTVIKAG DTLVVTLQHGNRKYVEEYIKQRAEVPG >gi|269838509|gb|ACXB01000002.1| GENE 313 325690 - 326604 957 304 aa, chain + ## HITS:1 COG:BS_iolS KEGG:ns NR:ns ## COG: BS_iolS COG0667 # Protein_GI_number: 16081029 # Func_class: C Energy production and conversion # Function: Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) # Organism: Bacillus subtilis # 6 302 5 309 310 293 47.0 3e-79 MANLVRIGKSDVETTALGLGTNKVGGHNLFPNLKDEDGYAVVRKALDEGIQLLDTAFIYG KGRSEEIIGDVLQDYDRSKVVLATKAAQDPLHDYQPNNDPEFLTLQIDAALRRLKTDYID IFYIHFPDETTNKYEAINALVKARKEGKIKAIGVSNFSLAQIKEANVEDVIDVVEDDYSL VHRDAEKELFPYLAEHQISFVPYFPLASGILTGKYTKKDHERFDQYSEAQFNQIIEATEK VRQIAEAKQATVAQVILAWYLKNPAISVVIPGARKPEQVESNAKATEIELNEQEYKEIDE WFKN >gi|269838509|gb|ACXB01000002.1| GENE 314 326886 - 327758 545 290 aa, chain - ## HITS:1 COG:CAC1588 KEGG:ns NR:ns ## COG: CAC1588 COG0583 # Protein_GI_number: 15894866 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Clostridium acetobutylicum # 1 290 1 288 293 172 31.0 7e-43 MNTKDLKYFHSLVKNKNFSTVAEEFNVSQPTISMAIRRLEDTFQTTLFTRDQGRHHLSVT LSGQQLDEHVQAILDHLTVAQNSIKNINTKKLILGLPPIMTKYFFPRIAKRLTEQNLLKA IVPVEKGSAELEEMLLAGTLDMSLMGAIEKQFNENLAYQHLGNDHFVAIVGSQSPFFSRD KIWFSELKNESFITFDSNFVHAEALRNFSNITNFRPNVVYQSNDSQVIQEMVAQNVGVGF IVNSAVIKRPDVRVLPFFDEEQPLFYMNLVQRKDRILSPYQQRIADLIRE >gi|269838509|gb|ACXB01000002.1| GENE 315 327895 - 329523 1984 542 aa, chain + ## HITS:1 COG:L121483 KEGG:ns NR:ns ## COG: L121483 COG0281 # Protein_GI_number: 15672882 # Func_class: C Energy production and conversion # Function: Malic enzyme # Organism: Lactococcus lactis # 4 542 2 540 540 708 64.0 0 MTEKAMSILNNPYLNKGTAFTKAERDQLGLNGLIPPYIQTLDEQVAQTYAQFQTKANDLE KRLFLMQIFNENRVLFYKLFSEHVVEFMPIVYDPTIADTIENYSELYVQSQNATFLSIDD PDNMETALKNAADGRDIRLIVVTDAEGILGIGDWGTNGVDISVGKLMVYTAAAGIDPSQV LPVVLDVGTNNEKLLKDPMYLGNRHERIKGDRYFEFVDQFVQTAENLFPNMYLHFEDFGR DHAAKILNKYKDRYVIFNDDIQGTGIITLAGILGALNISKQKITDQVYLSFGAGTAGAGI LSRIYAEMVENGLSEEEAKKHFYMVDKQGLLFDDDETLTPEQKPFARKRSEFENPEELTD LLSVVKAVHPTIMVGTSTKPGAFTEEVVREMAAHTERPIIFPLSNPTKLAEAKAEDLLKW TDGRALIATGIPVDDIEYNGVTYQIGQANNALVYPGLGLGVIASTAKVLNDTMISKAAHS LGGIVDVSKPGAAVLPPVSKLSEFSQTVAEGIAQSAVDQGLTKETITDVKKAVADTRWTP EY >gi|269838509|gb|ACXB01000002.1| GENE 316 329542 - 330930 1256 462 aa, chain + ## HITS:1 COG:lin2328 KEGG:ns NR:ns ## COG: lin2328 COG0114 # Protein_GI_number: 16801392 # Func_class: C Energy production and conversion # Function: Fumarase # Organism: Listeria innocua # 5 456 3 454 455 479 57.0 1e-135 MADYRIEEDTLGKVKVPQQALWGAQTERSRHNFAAGPLMPVEVIRALINVKKAAAGVNNR FGLLPTEKTRLIQKASDQLLALDDATLMQDFPLRVFQTGSGTQTNMNVNEVIVHVAQQID SDLALLPNDDVNKSQSSNDDFPTAMNIAASQAINHLLPVIKNLITTLAEKQRQYWDVVKI GRTHLQDATPLTFGQEISGWVSTLEHDLDYLAKLKDTLLELPIGGTAVGTGLNAPAGYDL EMVNELSKVYDLRFMTQNKFFGLSAHSGIGAVHGAVKTLAADLLKIANDIRFLASGPRAG YGELTIPANEPGSSIMPGKVNPTQAEALTMAATQVMGNDVTINVAASQGNFEMNVYKPVI IFNFLDSVNLLSGVVAQFTEKMVAGIEINADRMLDLVEQSLMTVTALSPHIGYHQAAEIA QLASRKGLSLKQAALKSGLVNEADFDRWVDPLKMTNNKRESE >gi|269838509|gb|ACXB01000002.1| GENE 317 331152 - 332123 999 323 aa, chain + ## HITS:1 COG:CAC0366 KEGG:ns NR:ns ## COG: CAC0366 COG0679 # Protein_GI_number: 15893657 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Clostridium acetobutylicum # 9 321 5 300 301 73 21.0 7e-13 MAAFITSVESIITILLMMALGFGLRGMGWFDDHFSGSISKLIMNVALPASIFVSVMKYLT LPKLVSLSSGLIYSFGGVIIGYIIAWITVKLLKVRPGRRGLFMNTVVNANTIFIGLPLNI ALFGSQSLAYFLVYYVTNTVSTWAFGVFLIANDDPTKQKGDQGTERKVNWKKLLPPPLLG FIVAIIWLVLGLPVPSWAGNTLSYVGNLVTPLSLIYIGIVLYDAGLKSIHFDRDTVFALL GRFVLSPLVITGLILLGAHTGHVLPTMEMQTLIVQAAAPGLAVMPILANESHGDVKYATN LVTTSTILFIVVVPIVMTLIQFI >gi|269838509|gb|ACXB01000002.1| GENE 318 332515 - 332790 266 91 aa, chain - ## HITS:1 COG:no KEGG:LGG_00390 NR:ns ## KEGG: LGG_00390 # Name: aroE # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 84 10 93 95 87 51.0 1e-16 MATWNELRKKVTKNIPTEELNLIETLTYLQERRIKLNITQKELGKRIGMAQSRIAKIESL DSTPSLETLNRYAHGLGLEIKLTLKPFLHNQ >gi|269838509|gb|ACXB01000002.1| GENE 319 332806 - 333036 107 76 aa, chain - ## HITS:1 COG:no KEGG:LCABL_04680 NR:ns ## KEGG: LCABL_04680 # Name: not_defined # Def: hypothetical protein # Organism: L.casei_BL23 # Pathway: not_defined # 1 75 44 118 122 93 61.0 2e-18 MLQDLGPLLKEPQVKFIKGYKHPLMELRPQPERIFYASWNKNRYILLHHYSKKKNRTDPR EVHIAINRLDDWLQRH >gi|269838509|gb|ACXB01000002.1| GENE 320 333021 - 333164 90 47 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MYEIDFYFDSNGKSPVSDYIVALSKSHQKNDRAILKKLFTSLICYKI >gi|269838509|gb|ACXB01000002.1| GENE 321 333634 - 335544 1793 636 aa, chain + ## HITS:1 COG:CAP0099 KEGG:ns NR:ns ## COG: CAP0099 COG1193 # Protein_GI_number: 15004802 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Clostridium acetobutylicum # 3 627 2 625 629 467 40.0 1e-131 MFDQALFKKLQFDRVKRGVIAKAVGDFSKEKLKNMPIESNLASIRVKQQETKEARIIIES GQYIPLLGLKQINRLMNKIDKGVILTPAELIEFADFLRSNRMLKKFFEKNRYQTPTLYKY SQALSKFTTTEDHIYQKVDDYEVLDDASRDLRKARRQFKTIKDEIQDKLMKFLRSPKNKP MIQDVLIVEKQGSITVPIKASYKFKVPGTIVDQSSNGQTVYIELDLVAKLNEKRAFQKAV IESESYQILAELTSELSEQRTSILNAIDAVTMFDIIFARAKYSREYDGITPQINQAERIN IIQGRHPFLVGTPVPLDFQLGKDYRGLIITGANAGGKTIVMKTVGLLTLMAMVGLQVPAQ AGTELAVFDQLFVDIGDEQNIENQLSTFSAHMKNIAKIVQKAGRNTLVLLDELGSGTDPN EGAGLAIAILEDLYRKGALIVATTHYGEIKNFTKKHADFTPAAMKFDRETLTPKYVLQVG EVGDSQALWIAQKMRLPKALIQRAGKYITNQAKYATKKIQFPKLAKTDQLPDKAENEMRY QKGDQVYLTELKKVGLVYEDHGDDTVAVFVEHGFQNVLRKRTRLKMAADKLYPVDYDLES LFTDFHQRKMRKDLERGSKKAQKQLDKMARARRNKN >gi|269838509|gb|ACXB01000002.1| GENE 322 335755 - 336255 497 166 aa, chain - ## HITS:1 COG:SA0840 KEGG:ns NR:ns ## COG: SA0840 COG1881 # Protein_GI_number: 15926569 # Func_class: R General function prediction only # Function: Phospholipid-binding protein # Organism: Staphylococcus aureus N315 # 1 165 1 169 171 136 42.0 2e-32 MKINVALSNGYLPDRFGKYAPAADKLHDLPIRSFPIEISELPTDTAALALTLIDYDAVPV AGFPWIHWIATDIAVTNLIPENASALENEITQGKNSYVSKFLDVDDPAIFEHYSGPKPPT DHEYTLTVYALKEPTNLPKGFYLNDLMRKTEALALDSAQIKIPSRG >gi|269838509|gb|ACXB01000002.1| GENE 323 336381 - 337151 567 256 aa, chain + ## HITS:1 COG:lin1894 KEGG:ns NR:ns ## COG: lin1894 COG0708 # Protein_GI_number: 16800960 # Func_class: L Replication, recombination and repair # Function: Exonuclease III # Organism: Listeria innocua # 6 256 1 251 251 389 71.0 1e-108 MGGTVLKLISWNVNGLRAAVKHGFLDVFNELDADIFCVQETKLQEGQIDLDLPGYHQYWN YAEKKGYSGTAVFTKREPVAVSYGLGIPEFDQEGRVITLEYEEFFLVTCYTPNSQPELRR LDYRMNWDDAFRAYVKQLADTKPVIFCGDLNVAHEEIDLKNDRTNHHNAGFTDEERQKFT ELLQSGFTDTYRYFYPDKEGVYSWWSYRFNARANNAGWRIDYFVTSQALDKQLADAKIHT EIFGSDHCPIELDLNL >gi|269838509|gb|ACXB01000002.1| GENE 324 337175 - 339202 1863 675 aa, chain + ## HITS:1 COG:BH0649 KEGG:ns NR:ns ## COG: BH0649 COG0272 # Protein_GI_number: 15613212 # Func_class: L Replication, recombination and repair # Function: NAD-dependent DNA ligase (contains BRCT domain type II) # Organism: Bacillus halodurans # 10 675 1 669 669 656 51.0 0 MSLPKPIEKMNLTEANELAEQLREKLDRWSELYYTKDAPEVEDYVYDENYADLQALEQAF PEIASPDSITQRVGGEVLAGFTKVTHTEPMLSMGDVFSKEELAEFDQRIQKNVGHPVDYN VELKIDGLAISLVYEDGKLVQGSTRGDGNIGEDITKNLKTIKSVPQTLSRPLSLEVRGEC YMPKAAFAKLNEQQSAAGKSVFANPRNAAAGSLRQLNTQITKARELDTFIYTLVEPEVLG VQTQHEAIQAMAELGFNTNPTQTVCHSLDEVWDYIERYEGQRDDLPYGIDGIVLKVNDLG LQAELGHTVKVPRWEIAYKFPPEEEATVVRDIEWSVGRTGVVTPTAVMDPVQLAGTTVSR ATLNNVDQLTAKDVRIGDTVLLHKAGDIIPEITRVVLDKRPADVADLTIPNQCPSCGKEL VHLNGEVALRCINPDCPAQIVARLEHFGSRNAMNIMGLGPKQIQQLYAKGFIHHFDDLYK LTADQLSQLDGFKEKRVNNLLEAIDRSRQNSLERLVNGLGIQGVGTKMARTLAEAFGSMD RLMEASVEEFDAVDTVGETLANNLATFFQSEAARNMIDELKAVDVNMEYLGAQPSEAPEN YFNGKKVVLTGKLEHFTRNELKEKLLNLGADVAGSVSKKTDVLIAGADAGSKLTKAQDLG VEVIDEATALEKLEQ >gi|269838509|gb|ACXB01000002.1| GENE 325 339213 - 339632 259 139 aa, chain - ## HITS:1 COG:lin2694 KEGG:ns NR:ns ## COG: lin2694 COG2246 # Protein_GI_number: 16801755 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 11 136 20 145 145 80 42.0 8e-16 MIKQLFKKYKSLISYLFWGVVTTLVNIVVFAVLVDQLHIFYQVSNVIAWFVSVLVAYVSN KLWVFNSHTSTASALFAEALRFFLMRAATLVLDIVILYVGISLLHGNDIFVKIIDNVVVI ISNYAFSKLVVFRTKKKWE >gi|269838509|gb|ACXB01000002.1| GENE 326 339731 - 340657 823 308 aa, chain + ## HITS:1 COG:SP1606 KEGG:ns NR:ns ## COG: SP1606 COG0463 # Protein_GI_number: 15901446 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Streptococcus pneumoniae TIGR4 # 4 307 2 305 320 316 51.0 4e-86 MKKLSVIVPAYNEEETVELFYDAFAKVETQMDVEPELIFVDDGSKDKTLVEIKKLQKLHE EIHYISFSRNFGKEAALYAGLQKASGELVAVMDIDLQDPPELLPQMVKMIEEGEYDSVAT RRKDRDGESRVRSFFARQFYKWINKVSSLELVDGARDFRVMTRQMVDSVLSMRERERFSK GLFNWVGFNTYYISYENRERAAGKTSWSFWGLMKYAIEGFVSFSTAPLSFVTSAGIATCV LAVLGALAVIVRAIIFPHTSAFGWPSLVVIILFFSGVQLLSLGIIGRYIAEVYLEVKDRP VYIVREEK >gi|269838509|gb|ACXB01000002.1| GENE 327 341168 - 342415 548 415 aa, chain + ## HITS:1 COG:no KEGG:PEPE_1605 NR:ns ## KEGG: PEPE_1605 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 404 162 565 578 369 45.0 1e-101 MPLVVLMGINLLNNDLKTVKIVQLAMVVSLIIQIHVLSAVISVLVLMIFFVVAVLKNRNK WDLFLRCVGAGVLSLVLTFNVWGPMLEIYSSNNLYTPFKTVLSESAINISTGDADFRHIG LVISVLFVLQIAYYCLYHSDMSFINRIVTGIGIFMLVISSNVFPWELVDRKLPFLKSLLQ FPIRFEGMAFILLILGLSLTLSSVKNEDVQKMALSFFMMAAIFGLIQTNRSMQLKSEIWN SKNPVSDTTNMQFQTKDPKAIRNAFRGRNLKKGLEILQKPNTDYVSAPNTNKKTEHPYYQ YDKDFLSTDRKVNKTVKSDQLLVTWIANEDNSTTKLPITVYKNSVLKLNGHSIKPKQITF DPLNVPSIKTDKKGKNTLSLRYSSRFMNKYFLWGVYAIWGVLLLQALKNFLKRIR >gi|269838509|gb|ACXB01000002.1| GENE 328 342571 - 343386 709 271 aa, chain + ## HITS:1 COG:lin1062 KEGG:ns NR:ns ## COG: lin1062 COG1682 # Protein_GI_number: 16800131 # Func_class: G Carbohydrate transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: ABC-type polysaccharide/polyol phosphate export systems, permease component # Organism: Listeria innocua # 1 271 1 267 267 234 48.0 2e-61 MNAMFQIIKDQFLNFKIIRRMAKYDDRATYQSHYLGLAWEFLNPLIQIGIYYLVFGVALK RGDPAPGVPYLPWMVLGIAPWLYMNKTTLDASRSVYQQVGLVSKMKFPVSVLPSIKIYGN LYSYWTMMAFGVFLMFTNGIYVSISWIQFIYYFICMIALMFAVGIFNSTVSVLIRDWHIT LQSILRMLFYMSGVLFNFTTSNFPAFLVRLLELNPFYYVLNGMRESLLNKGWIWQQPNVN LTIVFWLFVLIVMIVGSYLHNKFRSHFVDLI >gi|269838509|gb|ACXB01000002.1| GENE 329 343402 - 344472 983 356 aa, chain + ## HITS:1 COG:lin1063 KEGG:ns NR:ns ## COG: lin1063 COG1134 # Protein_GI_number: 16800132 # Func_class: G Carbohydrate transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: ABC-type polysaccharide/polyol phosphate transport system, ATPase component # Organism: Listeria innocua # 1 263 1 263 335 316 58.0 6e-86 MNPEYKVEVKNVTKEYDLYKTKSDQLKNFFSLGKVDVPHFWSLKGVSLSIKAGETLGIIG INGSGKSTLSNIISGIIPQTTGSVEVRGDTSIIAIGAGLKRNLTGAENIRLKGLMQGLSI QEIEDLKSSIIDFADIGNFIDQPVKDYSTGMRSRLGFAIAVHINPDIIIIDEALSVGDDT FYQKCVNKIIEFKKQGKTIIFVSHSLGQVEKICDRVAWMHYGDLREIGDTKEIVDHYRTF SKDFKKKSSAERREYQANKKQEQADFDIEEYKRTLIEQTSENEQVNKAKAEKIVNKAMYG QILPEKMTTSTKAVLWCAILLMAFFCLVNISGHSITNSVQHPTTLLHPTHRVITKG >gi|269838509|gb|ACXB01000002.1| GENE 330 344532 - 347063 1432 843 aa, chain + ## HITS:1 COG:L146188 KEGG:ns NR:ns ## COG: L146188 COG1887 # Protein_GI_number: 15672903 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC # Organism: Lactococcus lactis # 33 672 9 651 807 266 29.0 2e-70 MGSKLKDFKKRVKFLARPIKEYVSNSRVRENAYYYHQLKKNSIKKNSVLLESYHAVSMTG NVYAIFTELAKSKPDYDFYWVYAVDKDPMMECLKKEFPDNKLHFVKHESKEYYRLLASCE LLINDTSFMPYFIKQKGQTYVNTWHGTPLKTLGLDIKGSGWADHKNIQRNLLQVDKLLMP NKFTADRLITSHDLNGILPAQVYVTGNARVDLSFDDAKKIRQKYQLGEKKIVLFAPTWKK DIEDTTVEDLQQLINQMQSLQQKVGEGYKVLLKTHYFVYDFFVKEGFGDQVLPNWIDTNE LLSAVDILITDYSSIFFDFLPLKRPVYFYIPDKEAYAKARGFYMDLDTLPGLVSENLDEI GVALAGNQSVYLQEYATKYEKFWQKYLYLDDGKARKRAVKAIFDQEGRDAISYESGKKKI MMYAGGFYNNGITISAINLSNYIDYDKYELIFWDFSKINAEKAGNIMRVNPKAHFIYKFS NTIRDLSDTYNQNWIYRQGANTKFGSMKKYQKQIAYEVRRILGNFEPDVVIDFGGYNKTF TAITAVAPFKRKVVYLHNDMLGEYNKVINGKYKHRWNLKVTFSMYNYFDEIVSVSESVND QNKQNLKPWIRDLSKMVYVNNVVDAEGVLEQKQLVHEQLEGLQKSRYDQQYRIVFDESVN WGGILTEKSFIKPAEDKINFINVARLSPEKNQINLIKAFGKIVAKNKQVHLYIVGNGPLR RQLEDLIYDLGLSEYISLTGYVSKPAMLTELTDCFILPSNYEGQGLSIIEAMLLEKPIIG TDVPGIHSVISGTAGLLVENTIDGIAKGMDKFINGEIKASNFNHKKYNDEALQQFYSIVI GNQ >gi|269838509|gb|ACXB01000002.1| GENE 331 347256 - 348404 666 382 aa, chain + ## HITS:1 COG:lin0544 KEGG:ns NR:ns ## COG: lin0544 COG1680 # Protein_GI_number: 16799619 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Listeria innocua # 60 373 95 398 398 102 26.0 2e-21 MSKKLINKLVIGGLIVLALIIVWGQASTYLKKPAATEKNNHLAIPRATHSTERGRLQQAL SPTGFSGSAILVKNNQIVDSYTAGVEDNEGGKKNRLTTAYEIDSLQKSLTAGLVMTLVNR HEIALTDRLNQYITGIPGSAEITIRQLLDMTSGLSLPKLKYKGDSLSRKQYLKILRENVK FQPQKYGKWNYQPVNYVLLSMILEKVTGDSYQQLFAERYTSKLNLQQTVFATDTTGYDTA KGYYLKKQGDEVKQVLQKPNLATVESELGTGQVYMSVADYYKTLAKLLNGGLLGKPTVQT LYRPANGAQVKYHGGLYTNHQNYYSANGYGYGFEDHIRISLDGKQALIVFSNHQSSKTSE PPVKLAVDKLTNQYFKIAQINE >gi|269838509|gb|ACXB01000002.1| GENE 332 348477 - 349682 747 401 aa, chain + ## HITS:1 COG:BS_tagF_2 KEGG:ns NR:ns ## COG: BS_tagF_2 COG1887 # Protein_GI_number: 16080625 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC # Organism: Bacillus subtilis # 25 391 19 383 387 363 49.0 1e-100 MDLITILRKVKRRLLTYAFKINYRPAKRPTVIFESFGGRQISDSPLAIYKEIKKEYPDYR LIWVVNKQLVEEGFPNGERYDYVIRGSFKWVRTIEKAHVWVENARLPRWVKKPAHVKILQ TWHGTPLKKLGLDIAQVTMPGTTTEKYHENFVHEANRWDALISPNAYSTKIFRQAFGYQN EILEIGYPRNDELAQPNAAKIRQLKEKLGIPLDKKVVLYAPTYRDNQFFTKGKYAFSLPF DLAKLRDALGEDTILLLRMHYLIANAVDLTGVEDFAIDVSNYPDVADLYLAADVLVTDYS SVFFDYAYLKRPIVFFPYDYETYRDELRGFYLDYQKDLPGKIVYNEGELTHELAQLTKQT QQQPSFQFEQFYARFCAIHAGNAAAQATNWVSQQLQAYEAK >gi|269838509|gb|ACXB01000002.1| GENE 333 349872 - 350636 826 254 aa, chain - ## HITS:1 COG:no KEGG:PEPE_1596 NR:ns ## KEGG: PEPE_1596 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 254 1 254 254 291 73.0 1e-77 MIIFLLILAVIATFVSMTLIPKPVVRYICTAISAIVVVGSVALLVMNDREHFGMKKITET TTQTVYSVSPSKQMPMLLYKNIGTDGKERVYVYKKDADKKKTSHTELEKTTNRVKTTNDD QARLEKKTTRWVYKNDTYRLWFGIAGNDREVSHRVNTFYVPKNWPTLSTTEAAKLQKLVK QNQASMKKDATKYVKAKVTATVKNTLKAALQKNPRMSPAEQKKLTDQTTAEATKKFSAEY QAQMMQKLIEQAKK >gi|269838509|gb|ACXB01000002.1| GENE 334 350636 - 352114 1157 492 aa, chain - ## HITS:1 COG:lin2733 KEGG:ns NR:ns ## COG: lin2733 COG0477 # Protein_GI_number: 16801794 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 6 477 11 482 493 483 55.0 1e-136 MTQAFDAHGKPYKRSLLILVLLIGSFCTVLNQTILTTAFPTLMKAFDISTSTVQWLTTGF LMVNGIMIPISAWLTSRIPSKRLYLSAMTIFLIGTTFCYVAPSFSVLLAGRLIQALGVGI TMPLLQTMMLTIFPANQRGSAMGLAGLVVGVAPAIGPTLSGWVIDNYHWRTLFGMIIPIV IVVLIAGFFFMKDVLKTEHTQLDWISAALSTIGFGSLLFGFSEVGDKGWTDSLVVATLII GAIFVILFEARQLRSKNPFLDLRVLKIPEFSISTTLSSVSMIAMVGAEMVLPLYIQTVRG ESAFHSGLTLLPGALMMGVLSPITGRLFDRIGARRLATTGMFLLTIGTLPFAFITRTTPM LYIIVLYAIRMAGISMAMMPVTTAGMNSLPFDKMGHGTAINNTLRQVASSMGTAILVSVL TNVTNNQMPAKHLLKAEPLAYKDQAFNATISGYHASFWIAVAFSALGLIIAFFVSNRSGS SAEVQPQAGGEK >gi|269838509|gb|ACXB01000002.1| GENE 335 352266 - 352718 413 150 aa, chain + ## HITS:1 COG:no KEGG:PEPE_1594 NR:ns ## KEGG: PEPE_1594 # Name: not_defined # Def: transcriptional regulator # Organism: P.pentosaceus # Pathway: not_defined # 1 150 1 152 152 182 59.0 2e-45 MGNPSDRVDMLKRIIASESLLLSIGDVAKAIDVSPRQLRYWEKKGYVKTNVSESGQRKYT YPALIQAGNIAHYLNKGYTLAMAAKKVENNRKLMKMLRIFLQSRVNKGYEIENGYEIDLG EVKNLPAEEHLLIDVMQDGESYFKIKKTND >gi|269838509|gb|ACXB01000002.1| GENE 336 352897 - 353094 123 65 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKINTNEMAASIATITILLTLETLMLLPPLESEHLLGNLFPQKNAVARVRGNSVKNRIKK FSARQ >gi|269838509|gb|ACXB01000002.1| GENE 337 353021 - 353602 612 193 aa, chain + ## HITS:1 COG:lin2059 KEGG:ns NR:ns ## COG: lin2059 COG3601 # Protein_GI_number: 16801125 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 10 184 10 178 203 104 38.0 1e-22 MSVSKVNKMVIVAMLAAISFVLIFIDFPILPGFSFLKIDFADVPVLIGTVLFGPVWGMAT AGLAGLLDIIVRDSNPAGALGAVANWMAAVAYVLPIYSFLKRTEDQPHHQAVMALVKGVL LGTALMTVVMSVANLFVLLPLYMKLASFQINISTLNMVLYGILPFNILKGIIVGAVIGLL YFRLMPIVRRGEK >gi|269838509|gb|ACXB01000002.1| GENE 338 354030 - 354554 386 174 aa, chain + ## HITS:1 COG:L24031 KEGG:ns NR:ns ## COG: L24031 COG1268 # Protein_GI_number: 15673763 # Func_class: R General function prediction only # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 6 172 8 178 189 115 40.0 6e-26 MRLDARSITKMALLLAIIIGLGLVPNLPIGLIPVPITVQNIGILLVGLILTPGEAAITIG AFLLLALVGIPVLTGMRGGVAVFMGPTGGYLLGYLVGAVLLAWWTSHGRQDWFGLFAKVA IIAVLVIDLLGIVGFAINMRMAFFKAVLANAIFIPGDVIKSALVALIGRRLKIK >gi|269838509|gb|ACXB01000002.1| GENE 339 354841 - 354990 70 49 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MIGFLKNLWQHDSVKFITRTVFYFLVFVILLYLYGYSGMSGGTFIYNEF >gi|269838509|gb|ACXB01000002.1| GENE 340 355005 - 356531 1707 508 aa, chain + ## HITS:1 COG:SPy1312 KEGG:ns NR:ns ## COG: SPy1312 COG1020 # Protein_GI_number: 15675261 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Non-ribosomal peptide synthetase modules and related proteins # Organism: Streptococcus pyogenes M1 GAS # 4 508 2 511 512 513 48.0 1e-145 MQKVTNVIEKIDSIAQEHPDWIAYDYLGNTHTYGELKAFSDNLAAYILEQNIMEQAPIMI YGGQTFEMVAAFLGAVKSGHAYVPIDRHSNPERLTMINEIAHPGMCIAIEDLPVSLDDLP ILEGQELSDVFADSQSVKLDQAVTGDENYYIIFTSGTTGKPKGVQISHNNLLSFVNWQMD QFDLPDRPVTLSQPPYSFDLSVMDLYATLVLGGTLKAVPKTVTDNFKELFEILPTLGLNV WVSTPSFMDVCLLQPTFDADHYPALSRFLFCGEELSHATAQALKQRFPEARIFNTYGPTE STVAVSAIEITDDVLEQNDRLPIGRLKPDTGGYIIDMDNNVVKAGNEGELVIYGPAVSKG YINNPTKTNEVFFKYEGHPAYKTGDLVVMDQDGVLYYRGRTDFQIKLHGYRIELEEVNHY LNNDPLIKAGIAVPKYGKDQKVAQLVAYVIPATDEYDSQIKLTVAIKDSLKANMMEYMVP NRFIFVEELPQTANGKIDIKSMIARVNS >gi|269838509|gb|ACXB01000002.1| GENE 341 356531 - 357733 722 400 aa, chain + ## HITS:1 COG:SP2175 KEGG:ns NR:ns ## COG: SP2175 COG1696 # Protein_GI_number: 15901985 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted membrane protein involved in D-alanine export # Organism: Streptococcus pneumoniae TIGR4 # 6 399 12 413 413 362 49.0 1e-100 MWTATPYENPTYFFMLAIALVPIVIGMLRGRRFHWYELLVSFFFLLLTFGGPKWQQGIAL IGYLIFQVILVSLYNRYRKQHNATGVFVGAVILAILPLAVVKMTPLLQSGNSSLIGFLGI SYLTFKAVQTIMEIRDGVLKDYDPWFFLQFLAFFPTISSGPIDRYRRFKKDYLNVPERGH YLDLLEKGVHYLFLGFVYKFMLSYVFGSLLLPRVQHIALQTDGLSWGLLGVMYVYSFYLF FDFAGYSLFAVAISYFMGVETPMNFKQPFKSHNIKEFWNRWHITLSFWFRDYVYMRLVFF FMKHKTFKSPKTTANVTYVLNMLLMGFWHGETWYYILYGLIHGVALVINDWWLGFKKKNP GRLPHNRWTEALSIFITFNFVCFTFLVFSGFLDKLFFVKY >gi|269838509|gb|ACXB01000002.1| GENE 342 357750 - 357992 356 80 aa, chain + ## HITS:1 COG:SP2174 KEGG:ns NR:ns ## COG: SP2174 COG0236 # Protein_GI_number: 15901984 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl carrier protein # Organism: Streptococcus pneumoniae TIGR4 # 1 77 1 77 79 77 53.0 8e-15 MDVKETVLNILTDLIGTDVSNSMDDNLFDAGLLDSMGTVQLLLQLQTELGIEVPVSEFER SEWDTPNKIIAKVKELQARG >gi|269838509|gb|ACXB01000002.1| GENE 343 357985 - 359271 953 428 aa, chain + ## HITS:1 COG:SPy1309 KEGG:ns NR:ns ## COG: SPy1309 COG3966 # Protein_GI_number: 15675258 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) # Organism: Streptococcus pyogenes M1 GAS # 1 417 1 413 416 315 40.0 7e-86 MAKRLWMIFGPVLAAALILIGLLFSPFKINKINSAVEQKAATALSPDTLKGDAVKRAALE NGNYVPFFGSSELSRFDLAHPSVMAEKYDWDFRPFLLGAPGTQSLTHYFEMQGINPQLKN KKAVFVISPQWFVRKGADPHAFAFYFSQLQAVNFLENQTGKPSERYAAKRLLTMLDDRSN STNRQVINALDRVANGQQVTSGQRTYLKYYKRLLAHEDQLFSPLSLQGTNQDHINRQVEA LPNSPSDGMIQQALTRQAKRQTSNNQFGIQNQFYNKRLKKRIAAFEGMQKHYDYTRSPEF ADFQLILDQFAKNHTQVLFIIPPVNQKWADYVGLSQEMLRGFDKKINYQLQSQGFNQILD LSRDGGKKYFMQDTIHLGWYGWYVVDQNVKNFVDQPSQSTHYQIKHQFFDEDWQQLKPSD LKTYIKNN >gi|269838509|gb|ACXB01000002.1| GENE 344 359458 - 360288 673 276 aa, chain + ## HITS:1 COG:lin2652 KEGG:ns NR:ns ## COG: lin2652 COG1284 # Protein_GI_number: 16801713 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 11 273 19 282 287 132 29.0 1e-30 MREKSFRLVNQFAIMLVALEVLAISINMFYAPHNVAAGGATGISILLEDAFGWNRALIVF IINVAMLIASYFTLGKQTTARITVGSLLLPVCMAVTPSLSLVSDRTLAVIVGGALYAIGV ALLYQIDASSGGTTVPPLILKKYFNFKTSVSLLVLDTIVCLMNIFSSGMEAFILALFSSV ITLLVMNYIETGIDRKKSVYIMSSRLSEVEEIISESLDQSYTSLNVQGGFSGDNRRMLML VVENAEYHRIIERIREIDPKAFILTTNVAEIHGGQY >gi|269838509|gb|ACXB01000002.1| GENE 345 360523 - 362382 1379 619 aa, chain - ## HITS:1 COG:no KEGG:PEPE_1585 NR:ns ## KEGG: PEPE_1585 # Name: not_defined # Def: FAD(NAD)-dependent oxidoreductase # Organism: P.pentosaceus # Pathway: not_defined # 1 616 1 616 621 878 67.0 0 MKIALIGAGPRNLMALERLVCWGISTNYSANVEISLFDPFGIGGRVWNPDQNHELKMNSL AEKITLFTDQSIEMAGPVHEGPSLLDWALANGRSFIEERQYHHQKLLLNELANLNKHSYS SRALFGIYQQWFYEQIINHLPDNFSVTPRSEWVTNVKKDAQQYTVITQDAAYNVDVVSAA LGEGNNPLSKEERQLQDFAAAHQLKYVPIAYPAEMDIDDVAASDHVIIRGLGLSFIDYLA ELTERRGGTFHRDEHGNLTYTRSGDEPTIYASSRRGLPYHARGLDQKAVGETFPRYFLSD QYVDDLVRQHQVISGEEFINRIQWDVELTYYVTLAQNSYPEIDLTAFEADLAASTKGFKK ILDNYGIAAKDRLNWEEWKNPIPKDVNDAASFTQFIKTYLQQDVDLANEGNLTAPFTSAI EKLRELRTNIRKVVTYRLISADDYVEQVLKHFNSLNSFLAVGPPAFRIEQILALIKSGIL TLIGPDMRVETSDDQFMTYSNRLADHQQYFGNVLIEGRLPQPNAANNTNPLVNNLLQQGL ARIFTLQLRDGSSYQTGALDVTDDTAELIDQNGNVVPHFFVWGLPTEKRHWLTNGAPIPG VNDVRLRIADRIAAQIFAK >gi|269838509|gb|ACXB01000002.1| GENE 346 362641 - 363279 814 212 aa, chain + ## HITS:1 COG:lin2878 KEGG:ns NR:ns ## COG: lin2878 COG0546 # Protein_GI_number: 16801938 # Func_class: R General function prediction only # Function: Predicted phosphatases # Organism: Listeria innocua # 1 209 1 203 203 119 35.0 3e-27 MYKVVLFDLDNTLLKTEDASVAALSYALKQDGVTVTPEAIISLMGIPGLEMAKQLGAPNP EKTIAIFNEQIGKEVDLIKPYDGIGAMFTGLHELGVEYGIVTSKLKRVFDDEMKHFPKIQ QIKRVVFSDDTQKHKPNPDPILFGIKKYFAEMDLKDVLYVGDSLFDMQAAHAAGVDFANA GWGAIPTNDFSEAEYVLQKPEQLLDIVQRSKK >gi|269838509|gb|ACXB01000002.1| GENE 347 363392 - 363637 201 81 aa, chain - ## HITS:1 COG:no KEGG:PEPE_1582 NR:ns ## KEGG: PEPE_1582 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 81 1 81 83 125 72.0 6e-28 MIINDPNMREYLEVQLIGHENNKIKARTRTGEYIFVYPTARQARDPLFWQCLKDIINNKL WLPITKQFHHLLENDWLVPSM >gi|269838509|gb|ACXB01000002.1| GENE 348 363897 - 364505 316 202 aa, chain + ## HITS:1 COG:SP2116 KEGG:ns NR:ns ## COG: SP2116 COG1266 # Protein_GI_number: 15901931 # Func_class: R General function prediction only # Function: Predicted metal-dependent membrane protease # Organism: Streptococcus pneumoniae TIGR4 # 30 202 39 208 213 59 29.0 5e-09 MDQVISLPQIAAMHIHDSHPVVHVLLVVVYTLTTLAVVIFLVQFYRYKVRKNHSDFANYP LNSKHFRIMLLMVGLWFIFMLLQTWYVTYFNIGTSENQSAIEQLLRDTPIWTWVDAVLVA PVIEELIFRGLFFEFFFTKDSRLVRIIGVVVNGALFGGLHDLGASFPIYAIMGMLLAITY LWTKDIKYSITLHIINNFISFL >gi|269838509|gb|ACXB01000002.1| GENE 349 364524 - 365864 1410 446 aa, chain + ## HITS:1 COG:L170983 KEGG:ns NR:ns ## COG: L170983 COG0534 # Protein_GI_number: 15672149 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Lactococcus lactis # 5 442 4 441 446 332 44.0 7e-91 MDSILTKGSPIKGIILFSIPLLLGNIFQQIYTLSDTLIVGRVVGVQALAAVGATSGLTFL IIGFAQGMTTGLSIITAQHYGAGDLRAVKQSFATSIWICGGLVLLLTPLSVWATRPLLRL MQTPANIIDGAAIFLSIIFGGLVATMFFNLFSNMLRALGNSRLPLIFLVIACIINVVLDI ILIVFMHVGIAGAGIATVTAQLISCFLCWFYIKARVPALSLEWREITTNWTLIKEQIRIG LPMGFQASIIAIGSIILQISLNHLGSSAIAAYTAAGKVDQLATQPMMSLGITMATFTAQN FGAKQYKRILKGIRQALTTSISYGFVMGILIILNSRTLVNLFIGNSEQHITNLAHQYFVI VSMSYFLLAILFIVRYTLQGFGKSMAPTLAGVAELLSRMLVGILVVPAFGFIGACTANPL AWLGSNLVLIWSYVQVVRQLRREPEA >gi|269838509|gb|ACXB01000002.1| GENE 350 365937 - 366479 557 180 aa, chain + ## HITS:1 COG:no KEGG:PEPE_1579 NR:ns ## KEGG: PEPE_1579 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 173 1 173 176 236 67.0 3e-61 MIFTYDVLKDVISTGKPIIINEQSQIQKLMADKIAAIKFVSKIKNEHEYYCFLELNPGKG IVFSSDGNTFDGFSVFQIPLSEFYFDVDVDKGIIGIEDGVGNETDFLDLFTGPSIGEFSR KYHHASDEEIMHGNTYEMTDRYLGDYLGFEGEDAQKLNLTLLRFLMAVYFDQNPASKPVK >gi|269838509|gb|ACXB01000002.1| GENE 351 366624 - 367151 458 175 aa, chain + ## HITS:1 COG:no KEGG:PEPE_1578 NR:ns ## KEGG: PEPE_1578 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 175 1 175 175 252 75.0 4e-66 MIFKYDVLSKVMQEDKTIEINKDSCIKKIAGLNGVEYDVRSSNRHDYFVFLPLNDDEGLV ISTDNHTELGFELLRTPKKEFFLSINTNINLVDYYDGPGTQTDFPDVLEQEELDQNYNHC YGASDQALKETKLYQQVDNCVSKYLRVDAKLEEKLNLVIMRLAFLAHSQRQHAVA >gi|269838509|gb|ACXB01000002.1| GENE 352 367340 - 368299 718 319 aa, chain - ## HITS:1 COG:L118696 KEGG:ns NR:ns ## COG: L118696 COG1940 # Protein_GI_number: 15673470 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulator/sugar kinase # Organism: Lactococcus lactis # 7 294 4 279 293 120 29.0 4e-27 MNNTEQLSIAVNESAIRYALFSDQGELKVRKSVPTPTDNIDNFLKAIYHIVEENQKNIYG IGISVPGQVDQADGIIYQGGSLPLLHGLSLGKIIAARYDLPVAMQSVGICAATAAHWNGN LRNIHNGAALILDDGVGAGIILNDRIFTGNHLEAGALGMILANPQTDNPSPSQIMFNACS ATKMVQKIGNVLQLSDPNDDTKVFKAIENGEVNARELFNEYCRNVAYMIANTQAVLDLNK YVICGRISTQSILVPEINHQLQVIRDSFSLLKETLHMPNVETSVFKQDTDLYGAYYFALS QFDFKKLQEDAAQDTSLPN >gi|269838509|gb|ACXB01000002.1| GENE 353 369028 - 369840 917 270 aa, chain - ## HITS:1 COG:SPy0617 KEGG:ns NR:ns ## COG: SPy0617 COG0561 # Protein_GI_number: 15674695 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Streptococcus pyogenes M1 GAS # 1 269 1 269 269 254 49.0 1e-67 MSIKLVAIDLDGTLLNDNKQLTEENIAAINAASKMGVNIVLCTGRPITGIQRYLAQLELQ NEREYAITYNGGLAQTINGEILIKHTLSFQDYLAAEAFSRQVGVHFHVDGKNHIYTANKN ISQYTVGESFLVEMGLRYRSVEEMNPDLEMPKVMFIDDPKVLSKARDQIFNRFQDEFSVV QSEPYFIELMPKNVSKGNAVKELAERLHLSLDQVMAIGDQGNDLSMIKTAGIGVAMENGI DEVKENAQFITANNNESGVAKAIRKFVINK >gi|269838509|gb|ACXB01000002.1| GENE 354 369851 - 371191 1081 446 aa, chain - ## HITS:1 COG:SPy0621 KEGG:ns NR:ns ## COG: SPy0621 COG1078 # Protein_GI_number: 15674697 # Func_class: R General function prediction only # Function: HD superfamily phosphohydrolases # Organism: Streptococcus pyogenes M1 GAS # 11 443 3 427 433 506 58.0 1e-143 MALKNQRLPMEKVFRDPIHDYVYVQDQVILDLINTKEFQRLRRIHQLGTTSFVFHGAEHT RFSHSLGCYEVARRIVENFERNYLSKNPNDGLWRKEERLVTLCAALLHDIGHGAYSHTFE HIFHTNHEQITTQIITDPTTEVNQVLRQISPDFPTQVAAVISHDYPNPQVVQLISSQIDA DRMDYLLRDSYYTGTNYGTFDLTRILRVMRPYSKGIAFQISGIHAVEDFIVSRFQMYVQV YFHSVSRSMEVILGHLLARAHQLYLDSATPWQQAPQFLMPFFNKQFTLNDYLKLDDGVLN TYFLQWEDSEDPILNDLANRFLNRTPFKSARISNQTRALLPELKQLVAAAGFDAEYYTAE NDSYDLPYDAYDPTSQKPRTQIELMQADGSLVELSTASDLVRAISGKVSSDERFYFPKEM LTSNTENLFSATFEAFQSHIKNGIIN >gi|269838509|gb|ACXB01000002.1| GENE 355 371350 - 371787 438 145 aa, chain + ## HITS:1 COG:no KEGG:PEPE_1573 NR:ns ## KEGG: PEPE_1573 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 2 145 3 146 146 233 79.0 1e-60 MALDNGIPIAIHLETFIEQEGEKNHLVFDEPGQVFQMGNSIYLRYQEVDEKSGQKIPVTM KIDGEGTVLLTRAAENEMRLRFASGKRIEARYRTPYGLFPIETVTPLLDVQLQNEPLAGQ VNIDYQLLAGKQLIGNYKIRLQFTA >gi|269838509|gb|ACXB01000002.1| GENE 356 371832 - 372371 634 179 aa, chain + ## HITS:1 COG:SPy1895 KEGG:ns NR:ns ## COG: SPy1895 COG3343 # Protein_GI_number: 15675708 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, delta subunit # Organism: Streptococcus pyogenes M1 GAS # 1 138 1 135 191 113 57.0 2e-25 MELEIFKGQNKDELSMIEVAHAILAKNGEPMAFVDLANAVQNYLEKTDEEFRNRLSQFYT DLNIDGSFISLGENTWGLRTWYPFESIDEALIHTEEDEDEDRPVRKKRKRVNAFLADAAD DDDVIDYDADDPEDEDVTAADDADADDPTYEDLSSDDDNDTLPDGIEGQLTELNDDEEE >gi|269838509|gb|ACXB01000002.1| GENE 357 372584 - 374188 1812 534 aa, chain + ## HITS:1 COG:SP0494 KEGG:ns NR:ns ## COG: SP0494 COG0504 # Protein_GI_number: 15900408 # Func_class: F Nucleotide transport and metabolism # Function: CTP synthase (UTP-ammonia lyase) # Organism: Streptococcus pneumoniae TIGR4 # 2 530 3 530 535 800 72.0 0 MTKYIFVTGGVVSSLGKGIVAASLARLLKNRGLKVTIQKFDPYINVDPGTMSPYQHGEVF VTDDGTETDLDLGHYERFIDINLNKYSNVTTGKIYSEVLRKERHGDYLGATVQVIPHITD AIKEKIMRAGTVTDSDIVITEIGGTVGDIESLPFLEAIRQMRSQAGAQNVFYIHTTLVPY LKAAGEMKTKPTQHSVKELRGLGIQPNMLVVRTEEDITDSMRSKIAAFCDVEPEAVIESK DVASLYEIPLNLKRQKMDEIVVKHFGLDVPEADMAKWADLVDHVNNRLDHTINIALAGKY VALQDAYISVNEALKHAGYVVNADIKITKFDSEKITKENVAELMAGQDGIIVPGGFGDRG IEGMIDAIQYARENDVPFLGICLGMQMASVEFARNVLGYQDANSAEMNPNTPHNIIDLMA DQEDVEDLGGTQRLGLYPCKLKEGTVAARAYDNQELIQERHRHRFEFNNQYRAEMEAKGL VFSGTSPDNHLVEVIEIPDKRFFVASQYHPEFLSRPQRPEGLFKAFIAAANQSK >gi|269838509|gb|ACXB01000002.1| GENE 358 374383 - 375654 1220 423 aa, chain + ## HITS:1 COG:L113067 KEGG:ns NR:ns ## COG: L113067 COG0766 # Protein_GI_number: 15672294 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine enolpyruvyl transferase # Organism: Lactococcus lactis # 1 417 1 418 421 420 53.0 1e-117 MKKMIIKGGQRLTGEVSIGGAKNSTVALIPAAILADTPVRFDSVPDILDVHNLMIILESM NVHSTFKDGVMEIDPTEIVENPLPSKAIKSLRASYYFMGSLLGRFKRSTVTFPGGDNIGP RPIDQHIKGFKALGANVTEDEDTVYISAYERGLHGAHIFLDVVSVGATINVILAAVKAQG VTTIENAAREPEIIDLAMFLNNMGAKIRGAGTDVIRIEGVDKLVSTATHTIIPDRIEAGT YLSLAAAVGDGILVNNIIPEHLESFTSKMIELGVDLKIDGDKIYVPKVEKMRGIEVNTNP FPGFATDLQQPLTASLLKAQGRSVVNDHIYPERVKHVSELQKMGANIQHADGVIYVDYTD QLYGANVEAGEIRAGACLMIAAFMADGTTTITKADNILRGYDSLVKKLTKLGAEVEITAD QSL >gi|269838509|gb|ACXB01000002.1| GENE 359 375682 - 376956 1125 424 aa, chain + ## HITS:1 COG:BS_rho KEGG:ns NR:ns ## COG: BS_rho COG1158 # Protein_GI_number: 16080761 # Func_class: K Transcription # Function: Transcription termination factor # Organism: Bacillus subtilis # 3 411 2 409 427 555 66.0 1e-158 MDKFLTMNDLQEMTLKEIYNLAREYKISYYSQMNKKELSLAVLRAQAKKQSFVEMEGVLD IIGNEGYGFLRPINYGSSQEDIYISASQITRFGLRNGDLVGGEARHPRPGERYYGLMRVT SVNNKDPEEAKQRPHFPALTPIYPNQQLTLATTPDVLSTRLVDLFAPIGFGQRGLVVAPP KAGKTTLLKAIANGISKNHPNAKLIVLLIDERPEEVTDLERSIDGEVVYSTFDQEPRNHT RVSELVLQRAMRLVEDKQDVVILLDSITRLTRAYNLVTAPSGRTLSGGVDPASFYKPKKF FGAARNIEEGGSLTIIGTALVDTGSRMDDVIYEEFKGTGNSELVLSRNLAERRVFPALDI RQSGTRKEELMISRDVLEQLWNIRRSMRGDALEYTEQILQLMKNTKNNDEFIANLKNLNF GKKS >gi|269838509|gb|ACXB01000002.1| GENE 360 377057 - 377302 421 81 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|116493296|ref|YP_805031.1| 50S ribosomal protein L31P [Pediococcus pentosaceus ATCC 25745] # 1 81 1 81 81 166 96 9e-40 MKKGIHPDYHPVVFQDSATGFKFLSGSTASSSETIKWEDGNEYPLIRVEITSDSHPFYTG RQKFQQADGTVAKFNKKYGLA >gi|269838509|gb|ACXB01000002.1| GENE 361 377398 - 378624 1190 408 aa, chain - ## HITS:1 COG:lin2884 KEGG:ns NR:ns ## COG: lin2884 COG0477 # Protein_GI_number: 16801944 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 14 403 2 390 402 397 53.0 1e-110 MFSHREGRARKKREPWQQNLFVLWFGTFIAGIAFSEIMPFLSLYVNTLGNFSKSQLSLYS GLTYSSTFLVLAIISPIWGKIADKRGRKLMILRASLGMAFVLGAMGLVQNVYQLIGLRLL QGVFAGYISNANALIATETPKEKSGYALGFLSTGPVSGSLLGPLVGGALASIFSYRITFF ITGALLLIVFFLSLFLVHEHFVPIESTEGSLTAKDVVHKLNRPQAVFGMFITTMIIQASN NSIAPIISLYVKELMHNGAGVTMVAGLIAAIPGIANMLAAPRLGELGDRIGTEKILSVAF LFAMVLYVPMAFVPSVFWLGVFRFFIGISDGAMLPAVQSILSKRTPPEVTGRIFSWNQSF QALGNMIGPLLGSAVSGLFDYNAVFIATSVLVLINFLLFRWLNGRSVA >gi|269838509|gb|ACXB01000002.1| GENE 362 378706 - 379395 753 229 aa, chain + ## HITS:1 COG:L125196 KEGG:ns NR:ns ## COG: L125196 COG3764 # Protein_GI_number: 15673095 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sortase (surface protein transpeptidase) # Organism: Lactococcus lactis # 8 229 53 283 287 152 37.0 5e-37 MNSKLKKWLSSIALTLVVIFSLALIFNRQIKTWMVSQYNPTVSEQVVTKNEKKKADFNFS KVKSLDWKTVVKARASEKRIKVIGEIAYPEVGIHLPIGKGVDNLTLALAAGTLKENEKMG KGNYALAGHHMIDKKVLFGPLYWKAKVGQKVYLTDEKNIYEYQVTTRKFIKATDVQVIDD VKDQKLLTLVTCDATGAGRLMIRGKLVKEMKHQEAPASVQKLFSRQFNR >gi|269838509|gb|ACXB01000002.1| GENE 363 379467 - 380048 593 193 aa, chain + ## HITS:1 COG:SP1284 KEGG:ns NR:ns ## COG: SP1284 COG1704 # Protein_GI_number: 15901144 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 1 191 1 181 186 207 57.0 7e-54 MSGMVIGIIIVAILVVAIVLMYNGLVKARTYTQESWSQINVQLKRRNDLIPNLVNTVKGY ATHEKETLSKVVELRNQLVDQTKVAEPSTAQRQAAMQTSNQLSDTLKSIFALSENYPDLK ANQEFNKLMEELTNTENKIAYSRQLYNSSVASYNIKLQSFPSNLVAGIGGFKAVDYLQVP EEETAAPKVSFDK >gi|269838509|gb|ACXB01000002.1| GENE 364 380071 - 380967 1007 298 aa, chain + ## HITS:1 COG:SPy0331 KEGG:ns NR:ns ## COG: SPy0331 COG0501 # Protein_GI_number: 15674492 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Zn-dependent protease with chaperone function # Organism: Streptococcus pyogenes M1 GAS # 1 298 1 298 298 314 57.0 2e-85 MLYQQIASNKRKTVYVMVGFAILVLLIGASVGYVFYNSASAGVVMAAIIAAVYMGLMISN STNVVMRMNHATEISEADHPELWHIVEDMALVGKVPMPKVYIVDDPSPNAFATGNNPQNA AVAVTTGILARLNREEMEGVIGHEISHIRNYDIRLSTIALALSAAVSLLVNWGMHAFWWG GGRRRDSDDDEDSSLRAILMLLALVLVILGPIATSIAQLALSRNREYLADASSVELTRNP LGLINALKKISASEPMQEADPSSAALYIADPFKKKRSLAHLFDTHPPIEDRIARLEKM >gi|269838509|gb|ACXB01000002.1| GENE 365 381015 - 381800 553 261 aa, chain + ## HITS:1 COG:no KEGG:PEPE_1563 NR:ns ## KEGG: PEPE_1563 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 2 261 1 260 260 426 81.0 1e-118 MLRDDYIFVHLESIVNLIYSRGITAKDFLSGILQVPTNILLLNREVSDDVPIDNHTFLNE INDAKTISQYLLDPHSSKNWIDFSQAEALSELTPNDIANLLYMGHMKSHLDTPFSYKLQN DYVYLEVGTNQVKTYYRRLKNFYAVLNRSVIRHAEQTYNEHRLVFRRVNHFSELPASMVR QLIPVLGEGVIFAFDQAIEQDHELRVPILIASESNLAPTLRSKESLYNQAQQIAVLKYNL RNQDWHFIITNPKAFDAEALY >gi|269838509|gb|ACXB01000002.1| GENE 366 382021 - 383400 1450 459 aa, chain + ## HITS:1 COG:SPy1420 KEGG:ns NR:ns ## COG: SPy1420 COG0770 # Protein_GI_number: 15675337 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide synthase # Organism: Streptococcus pyogenes M1 GAS # 1 458 1 452 463 343 41.0 4e-94 MKMQLSEIARALGVDEYPDQWNEVSVTSVQFDSRQLTPGSLFVPIKGQRDGHQFIEQAIQ AGAVATLWAKDHEDTRPADLPSIEVEDPLAALQKLAKYYLDKINPKVVAITGSNGKTTTK DMTAAVLATEFNVVKTEANFNNEIGVPITILGMNANTEVLVVELGMDRPGQLHFLSELVQ PDIAVITMIGEAHIEFFKTRDRIADAKMEITDGLKEDGCFIYDGDEPLLAERAKAVDVEQ RMFGMKNENDVFASDVAGTDTETSFKTNLDPEVEVKLPIIGEYNVKNALAAITVGDRYHV GVADSARALADFNLTKNRTEWLKGRQGERILSDVYNSNPTAAKAVLNSFAHTKKTGRRFV VLGDMLELGENADQMHAQLADSLNPAQFEEVFLVGQHMRALGKRLVDEEIYPAEAVHLYD ANELPQLTTDLQQMIKADDCVLLKASHGIHLEKVVEQLK >gi|269838509|gb|ACXB01000002.1| GENE 367 383848 - 385383 1857 511 aa, chain + ## HITS:1 COG:lin0859 KEGG:ns NR:ns ## COG: lin0859 COG0513 # Protein_GI_number: 16799933 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Listeria innocua # 2 440 3 440 516 522 59.0 1e-148 MKFTELGLEEDILKAVLDNGYDEPTPIQAETIPDVLAGKDIIGQAQTGTGKTAAFGLPIL QNVDLDNPNIQAIIVSPTRELAAQTQAEIFKLGKYKRAKVQVVYGGADIRRQINALKSHP QIVVGTPGRLLDHIGRHTIRLDHVKTLVLDEADDMLDMGFLPDIEKIIEQTPSERQTLLF SATMPAPIKKIGVKFMTDPKQVTVKSKELTADLVDQYYIRSKEFEKFDMLTRIIDVQSPK LAVVFGRTKRRVDEVAKGLVARGYNAAGIHGDLTQQRRMNILHQFRDGQLDILVATDVAA RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGAHGTSVTFVTNWEMDYLRDVERLTKK RLLPLKPPTEEEAFIGRAVMAEQNVQELVKKTDVDKFGEQADRLLEQYDARTLVAALLND ETKADASEIKVKITPERPLPRKKSGNHKSGGYRGGRRHGGGNGYRRNGNGGKWNDRKNGH RRDRDDRHAGSNHRQDNNKGGNKRHFVIKEK >gi|269838509|gb|ACXB01000002.1| GENE 368 385598 - 385951 328 117 aa, chain + ## HITS:1 COG:BS_ydcB KEGG:ns NR:ns ## COG: BS_ydcB COG0736 # Protein_GI_number: 16077529 # Func_class: I Lipid transport and metabolism # Function: Phosphopantetheinyl transferase (holo-ACP synthase) # Organism: Bacillus subtilis # 1 115 1 117 121 100 43.0 5e-22 MIYGIGIDITNIDRFKALHNPTSFIKKVLTDKEQAELAGKSGQRAYEFLAGHFSVKESYS KAYGTGLGKKLNFQDIEVEYDDNGRPVISNHPFAGVAHVSISHSKHHVVTQVILEGD >gi|269838509|gb|ACXB01000002.1| GENE 369 385954 - 387081 904 375 aa, chain + ## HITS:1 COG:lin0885 KEGG:ns NR:ns ## COG: lin0885 COG0787 # Protein_GI_number: 16799958 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Alanine racemase # Organism: Listeria innocua # 1 370 1 368 368 364 47.0 1e-100 MVEGWHRASRLVVDAAAIRQNVKKEIERLDPQSELFAVIKADAYGHGLIPVARYTEQAGA TGFCVAILDEALTLREAGFAEPILVLGITNVKWAALAAEKNVSLTVGDVEWLTKAAPQLT AEHPLKVHLALDTGMGRIGFQESDGLNQAAELLIKDPRFVFEGVFTHFATADEKDPTYFN LQVDRFHKLVDTLPEKPRYVHVSNTATSLWHAACNGNLIRFGVGIYGMNPSGTVLEPPYD LQPAMTLESRLSFSKLLKKGRSVSYGATYTAEQDEWIGTIPIGYADGYPRCLQGFHVLVD GHFCEIVGRVCMDQLMIRLPHEYPAGTPVILAGQSQGKSISMTDIADYVGTINYEITCGF TERLPRVYKNNDIVK >gi|269838509|gb|ACXB01000002.1| GENE 370 387136 - 387384 343 82 aa, chain + ## HITS:1 COG:no KEGG:PEPE_1558 NR:ns ## KEGG: PEPE_1558 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 76 1 76 79 92 63.0 4e-18 MSNQLRDISVEKEIYCEMFEVEPTGVSDQLIHAFFERHAAEHLELLKAGYQQMADINAKI TQDFTSCEAACEEHVFNVLSSD >gi|269838509|gb|ACXB01000002.1| GENE 371 387413 - 387775 210 120 aa, chain + ## HITS:1 COG:BH0522 KEGG:ns NR:ns ## COG: BH0522 COG2337 # Protein_GI_number: 15613085 # Func_class: T Signal transduction mechanisms # Function: Growth inhibitor # Organism: Bacillus halodurans # 6 117 3 114 116 147 67.0 7e-36 MDESKVKRGDLFYADLSPVVGSEQGGMRPVLVIQNNVGNHYSPTVIIAAITTRITKPKMP THVAIRAGEAGNPRASVILMEQIRTIDKQRLHDRIGRLDGQKMKLVNEALKVSLGLVANT >gi|269838509|gb|ACXB01000002.1| GENE 372 387872 - 388519 633 215 aa, chain - ## HITS:1 COG:lin0562 KEGG:ns NR:ns ## COG: lin0562 COG0517 # Protein_GI_number: 16799637 # Func_class: R General function prediction only # Function: FOG: CBS domain # Organism: Listeria innocua # 1 210 1 210 211 239 54.0 4e-63 MLLKSMVKPKQRLTTVQEDATLEEALKILEDSGFRCVPILDKTGRLFRGNIYKMHIYRHK SRGGSMQDPVTSLLKNATKYINLSAAFFTVFFTIKDLPYITVLDDNNYFYGILTHARLLD ALSQSWNTNVGSYVITVVSSDERGDLATSAKIITKYTSIASVITLDSNEDELIHRTLFTL PAGVPPKKLQRIISNLERKGFKVPEVEDLQSHRLA >gi|269838509|gb|ACXB01000002.1| GENE 373 388575 - 389948 1450 457 aa, chain - ## HITS:1 COG:CAC0747 KEGG:ns NR:ns ## COG: CAC0747 COG1376 # Protein_GI_number: 15894034 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 1 457 1 465 466 201 29.0 2e-51 MQQRKHQHQQPHHSKIAITIGAVVILGLGYAGMAYHYKSSSTFMPNTTVAGTNVGGKNAT QAQQLIEKHLSNQKLNLTANGKVVKKVSLADAGLNSTSRQSITSAIKSQNPWTWPLQLMD VANAADTPSVNLDQAGTKKLNAYAQTAADQLNQKLNSNTNSTGHVVSPEILAQQIQASTA KGAHELDLKNTYYSKKNNAAQVKLQRIQAENEKITYDVNGNTVVIPQATLKSWLKVKTDA QGQQKLSVDQSKVKAYLADLNQKYATYGADVTFNSTKRGTQTVKDGIFGWSINTTADAAN LSTNILKGASFTQKATIVGSGQSLKKGELGTTYVEVDKTNQHMWYYKDGKLQISTDVVTG KPSGGNTTPTGVFYVWNKQRNATLRGKNDDGSNYASPVNYWMPIDYTGVGLHDASWQPKF GGDWYKTHGSHGCVNTPPATMKKLFEAVPVGTPVVVF >gi|269838509|gb|ACXB01000002.1| GENE 374 390183 - 391154 1056 323 aa, chain - ## HITS:1 COG:lin0242 KEGG:ns NR:ns ## COG: lin0242 COG0039 # Protein_GI_number: 16799319 # Func_class: C Energy production and conversion # Function: Malate/lactate dehydrogenases # Organism: Listeria innocua # 4 317 1 312 313 382 60.0 1e-106 MSNIQNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTVGDALDLEDATPFTA PKNIYSGEYSDCKDADLVVITAGAPQKPGETRLDLVNKNLNILSTIVKPVVDSGFDGIFL VAANPVDILTYATWKFSGFPKEKVIGSGISLDTARLRVALGKKFNVSPESVDAYILGEHG DSEFAAFSSATIGTKPLLEIAKEEGVSTDELAEIEDSVRNKAYEIINKKGATFYGVGTAL MRISKAILRDENAVLPVGAYMDGEYGLNDIYIGTPAVINGQGLNRVIEAPLSDDEKKKMT DSATTLKKVLTDGLNALAEKQDK >gi|269838509|gb|ACXB01000002.1| GENE 375 391397 - 391954 698 185 aa, chain + ## HITS:1 COG:BS_spoVC KEGG:ns NR:ns ## COG: BS_spoVC COG0193 # Protein_GI_number: 16077121 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Peptidyl-tRNA hydrolase # Organism: Bacillus subtilis # 1 185 1 185 188 204 55.0 7e-53 MKMIVGLGNIGKEYDQTRHNTGFMVVDALAKKYGVDHFKIHHEAMVGEFFSNGEKVLLVK PTTYMNDSGRAVRPLMDYYDLALTDLIVVYDDMDMPVGKIRLRQKGSAGGHNGIKSLIAH LGTEKFRRLRVGIEHPAHQKVVDYVLGRFTKEQKADFEIGVQNAIAALDDWLVGAEFSQL MNQYN >gi|269838509|gb|ACXB01000002.1| GENE 376 391965 - 395462 2995 1165 aa, chain + ## HITS:1 COG:BS_mfd KEGG:ns NR:ns ## COG: BS_mfd COG1197 # Protein_GI_number: 16077123 # Func_class: L Replication, recombination and repair; K Transcription # Function: Transcription-repair coupling factor (superfamily II helicase) # Organism: Bacillus subtilis # 26 1163 28 1168 1177 1112 50.0 0 MNIEKIFADTKAVVEVTSNLGAQTRQLVTGLLEPAKQLFLNALLQKQNQPILVVTDSLAH AERLYNELAEGQLDLQAYWFPAEEIIAAEVATSSPNYRTARVRFLNALANQQRGIYVTSA SGFRRMVPAAADVKQAQLEISVGEEYDPQQLIQQLVQLGYQRVEQVEKKSEFAVRGSIVD IFPLNQDVPVRVDFFDVEVDSLRTFDQNNQRSIENITQTKILPATDLIVTEEQFHQGIAK LQKQVHQARKRLDEDNQELLQQNIAEVTERWQKHQIIPEDVIYTKQLYAKPNSLLDYLAD GVLVVDDYPRILDAELDIQKNEASWIVDQLKNNVLLDNDPLGLEIRQLIRQKKQPQIFLS MFQKGMGRLKFDQLTEITTRAVQEFFGQMPVLKGEVERWMSRHATVLIFANSKERQSKIA STLRDFEIESRIVQADRIVTGAVNIIGQSFSQGFEMPDAKMVVLTEKELFAKVRKKRPRQ QHIENAERLKSYTELKPGDFVVHVNHGIGKYLGMTTMEVDGVHQDYLTIQYQGSGQLFIP VTQLNLVQKYVAAEGKRPKINRLGGSDWAKTKQHVASKIEDIADDLIELYAKREAEKGFA FPPDDDLQLQFENDFPYTETPDQLRSIKEVKEDMEKPRPMDRLLVGDVGYGKTEVALRAA FKAIEGGKQVAILVPTTILAQQHFDTMNDRFGDYPITTAMLSRFQTNAQIKEALAGLKDG TIDIVVGTHRLLSKDVHFKDLGLLVIDEEQRFGVKHKERIKALRSQVDVLTLTATPIPRT LNMSMIGVRDLSVIETPPTNRYPIQTYVVEENAGIIREGIMREIRRDGQVFFLHNRVQDI EKVVAQIEALVPEARVAYIHGQMTEKQLEDILFDFIEGEYDVLVTTTIIETGIDIPNANT LFVENADHMGLSQLYQLRGRIGRSSRVAYAYFLYQKDRVLTELGEKRLEAIKDFTELGSG FKIAMRDLSIRGAGNLLGKQQHGFIDSVGYDLYSQMLADAVKQKQGKKVPKRSDSEIDLE IEAFLPSTYIEDSQQKIEFYKRLRQVDSTDGLMDVVDDLIDRFGEYPTEVANLIQITELK LHADAAQVEKIERKNGNLFITLTPAASQKISGENVFAALSVTKLRATVAESNDKMHIKLV IQPQMTQQDWFEQLMSYVKKLAEYL >gi|269838509|gb|ACXB01000002.1| GENE 377 395499 - 397055 1325 518 aa, chain + ## HITS:1 COG:lin0247 KEGG:ns NR:ns ## COG: lin0247 COG2244 # Protein_GI_number: 16799324 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Listeria innocua # 1 510 10 520 529 253 34.0 8e-67 MRGAFILSVAAIIAKVLSAVYRIPLQNLVGNTGFYVYQQIYPIYGIGMTFALNGYPNFIS KIIAEEPDEKRKLVLGQYSIMILTVLSATVFLILVGGAQPIAQAMGDRQLAPMLRVVATM FLLMPFLATGRGYYQGIYNVIPTAKSQVVEQVVRVSIIILVAIITVQQDWSVYKMGAYAM ASSTVAAVAASWFFIPVIRKIMHEGTANFQWSVFKDLGKRFVVEGGLICLLSAMIILLQL VDSFTVKNNLVAAGMLPDAAKALKGVYDRAQPLVQVGTVIATAFATTLLPSLTEALQKRD SGAFYRSATSLIRVAVAISSAASVGMIALMPFINRLLFGSFAGSGALAIYNLSVILAALI FVNNSVLQSMGRLKMTFWAIAAGLCVKVICNGWAVRHWSITGASWITVLSLVIIAGAMSW ALPVRLLKRVYLENHFLLKLLIGNAVMFGVVQLITGFLRVLVSSDSRGAALLITAVAALI GALTWLSFVLINRVFTLREWLTIPFGKKIIRTIQRMVK >gi|269838509|gb|ACXB01000002.1| GENE 378 397052 - 397321 298 89 aa, chain + ## HITS:1 COG:L1001 KEGG:ns NR:ns ## COG: L1001 COG1188 # Protein_GI_number: 15671997 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) # Organism: Lactococcus lactis # 1 81 17 97 105 88 66.0 4e-18 MRLDKFLKVSRIIKRRALAKEVADQGRILINDKVAKSSSNVVPNDQVEIRFGNKTLVIRV EQLLDTTKKDDAERMYTIISENYQQDFRK >gi|269838509|gb|ACXB01000002.1| GENE 379 397398 - 397766 409 122 aa, chain + ## HITS:1 COG:no KEGG:PEPE_1549 NR:ns ## KEGG: PEPE_1549 # Name: not_defined # Def: septum formation initiator # Organism: P.pentosaceus # Pathway: not_defined # 9 122 5 118 118 138 72.0 6e-32 MANNQHHQKKNNSKMSYRTATGAPNPYARARKKRALVILGVFAAVAAVFLFQIVHAKVSR NSVNAKLAVESARYTKMKDENAQLKDKVKQMNDENYLEKLIRAKYFYTKKGETVYNLPND AK >gi|269838509|gb|ACXB01000002.1| GENE 380 398033 - 398494 339 153 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|218290661|ref|ZP_03494752.1| RNA binding S1 domain protein [Alicyclobacillus acidocaldarius LAA1] # 1 152 1 133 134 135 50 3e-30 MSIEVGTKVDGKVSGITNFGAFVDLGEHRSGLVHISEVSDSFVKDIHSVLKVGDSVTVKV LSIADDGKIALSIRKAVERPAQAAPKKSHEYHHSRDDRQFNHQSNHQAKQHHSNANESFD QMLSGFLKDSESRLSMLKKNTDGKRGGRGGRRN >gi|269838509|gb|ACXB01000002.1| GENE 381 398494 - 399867 1073 457 aa, chain + ## HITS:1 COG:lin0251_1 KEGG:ns NR:ns ## COG: lin0251_1 COG0037 # Protein_GI_number: 16799328 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Predicted ATPase of the PP-loop superfamily implicated in cell cycle control # Organism: Listeria innocua # 22 448 24 460 469 188 30.0 2e-47 MISLRALGEKIVDHYQLNQAPVIVAVSTGVDSTVLINALLAATNLAENRLIIAHVNHQLR SQSVQEEDFLRQWCAKRRLMFVSTKWPRELHPDTGVEAAARRFRYDFFAKVMQRYNATTL LTAHNATEQAESFLMQVVRGGWLSQLRGTPEERSFATGRLVRPFLKISKPTLVALAQENH LTWFEDETNQQDDYLRNRVRNQLLPALQAENPRVVEHIGQYQTEITEQDQLIKEISRQKL AQLRQGSQYQLPKFKAESRLWQKQLLKQLVSESCPAVAIGQNKLDEVLEFINQTNLAQGS IDLGNDYVLEITYDLLQIIKKKTVKSEQAKKHMVTLNKWLTLDEGTQFRISDRSVAGPVA GAMVLSDNQLKQPLFVRQATPQDRLRLKNGKYKTVRRELIDQKVPREQRANFWAVVDGDQ RVLWVLGLRQAWLAEPYLATQTQYILEYRTGGRPHGQ >gi|269838509|gb|ACXB01000002.1| GENE 382 399857 - 400393 566 178 aa, chain + ## HITS:1 COG:lin0251_2 KEGG:ns NR:ns ## COG: lin0251_2 COG0634 # Protein_GI_number: 16799328 # Func_class: F Nucleotide transport and metabolism # Function: Hypoxanthine-guanine phosphoribosyltransferase # Organism: Listeria innocua # 1 177 1 177 179 215 60.0 3e-56 MDNDIAKVLYSEADIKEACQRLGKQLTKDYAGKRPLILSVLTGAMFFTTDVVREFDGYAQ IDFIDVSSYNGGTQSSGKVELITDISEDVSGRDVLIIEDIVDTGRTLRYVMDLLYSRNAK SVKICSFLDKPAGRDVEATADYVGFTVPNEFVVGYGLDYQGYYRNLPYVGVLKPEIYK >gi|269838509|gb|ACXB01000002.1| GENE 383 400487 - 402571 1321 694 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 [Rickettsia canadensis str. McKiel] # 58 670 22 635 636 513 47 1e-144 MKNNRNGLFKNSLFYIVVFLSIMGIIAAVVGKGGNNQTSTISSSEFISQLKKDNVKSFDI QPSNGVYKITGKYRSAQEDDTATGLFPGTVSSSKVTGFQTSVLQNDSTVSQITKTASSDG VKVSTKEEESSSFWVQLLVTGLPLIFFIFIFYMMMGQAGQGGAGKGVMNFGKSKVKPADK SANKVRFSDVAGEEEEKQELVEVVEFLKDPRKFVQLGARIPAGVLLEGPPGTGKTLLAKA VAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFDQAKKNAPSIIFIDEIDAVGRRRGNGT GGGHDEREQTLNQLLVEMDGFTGNEGVIVMAATNRSDVLDPALLRPGRFDRKILVGRPDV NGREAILHVHAKNKPIASDVDLAEIAKQTPGFVGADLENLLNEAALLAARRNKKVIDAAD LDEAEDRVIAGPAKKNAVVSKKERQTVAYHEAGHTIVGLVLNDARVVHKVTIVPRGRAGG YAIMLPREDQMLMSKKDAMEQIAGLMGGRAAEEIIFNQQSSGASNDFEQATQIARSMVMQ YGMSDKIGQVELAAPGQSYYGESGPAYSEKTAATIDEEIRRFTTEGYEQARKIIQEHREQ HKIIAEALLKYETLDEKQILSLFKTGKMPEKKSDTEFPSEKAATFEEAKRELERKEAERH EQAANSVKESNAKDNEDTTVYYPNDEDHDDGSTN >gi|269838509|gb|ACXB01000002.1| GENE 384 402635 - 403513 888 292 aa, chain + ## HITS:1 COG:SA0470 KEGG:ns NR:ns ## COG: SA0470 COG1281 # Protein_GI_number: 15926189 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Disulfide bond chaperones of the HSP33 family # Organism: Staphylococcus aureus N315 # 3 290 4 290 293 306 49.0 3e-83 MSDYLIKSIVNDGMFRAYAVNTTNLVQEAQQRHDSWSAATAALGRSLTATLLLSSSVLKG KEKLTVKINGGGPVGTIVVDGNAKGTVKGYLQHPHVSLPLKEDHHIDVGQAVGNQGVMAV TKDMGLGDPFTGQVGLVSGEIGDDFTYYLAQSEQIPSAVGVSVFVNPDETVGVAGGFLIQ VMPDATDDAIDRLQTRLKEIPLISEMLRNGKTPEEILNDIFKDDQVKILDKMDVKFECDC SKERFAQSLASLPTEELQEMIDKDQGAQAVCRFCGNQYQFSEADLQKIIDEK >gi|269838509|gb|ACXB01000002.1| GENE 385 403606 - 404613 514 335 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|42631300|ref|ZP_00156838.1| COG0042: tRNA-dihydrouridine synthase [Haemophilus influenzae R2866] # 1 322 23 343 353 202 35 2e-50 GEKMEWKIGDITIPNQLVVAPMAGVTNTAFRVICKQFGAGLVVCEMISDRGIIYGNKKTL SMMQVDPNEHPMSIQIFGGTKETLVEAAKFVDQNTEADIIDINMGCPVNKVVNTDAGARW LLDPNKVYEMVSYVTDAVKKPVTVKMRTGWDDKHIYAVENALAAQRAGAAALAMHGRTRK QMYTGHADWDILKEVASQLHIPFMGNGDVRTPQDAKRMLDEVGADAVMIGRAVLGNPWEL QKVAAYLNDGTLIDEPTPAEKIKIAKEHLHGLVELKGENIGPREFRGQAAYYLKGVPHSA RTKVALNAAETEQEMIDIFDRFIEKLDSRMSRVAK >gi|269838509|gb|ACXB01000002.1| GENE 386 404679 - 406175 1590 498 aa, chain + ## HITS:1 COG:SP0713 KEGG:ns NR:ns ## COG: SP0713 COG1190 # Protein_GI_number: 15900610 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Lysyl-tRNA synthetase (class II) # Organism: Streptococcus pneumoniae TIGR4 # 9 495 4 491 491 667 67.0 0 MGEKQQPSMNDQLRVRREKMQELRDKGIDPFGHRFERTHLAAQLHEKYGDMSKEEIEEQG VVATVAGRMVSKRGKGKVGFADLKDRSGKIQLYVRKDELGEDVYKIFKRADLGDFLGVTG DVMKTDMGELTIKVTSLTFLSKALRPLPDKFHGLQNVEQIYRQRYLDLIANDESMERFRK RTKIVSAIRRYLDDHGFAEVETPVLHTQAGGASARPFITHHNALDIDLYLRIALELHLKR LIVGGMERVYEIGRVFRNEGIDTRHNPEFTMLETYVAYYDFHDVMDETEGILKAAVNAVS DDGKITYQGTELDLNQDFERLHMVDAIKKYAGVDFWPEMSVEEARKLADEHGVKYESWWT VGHIINEFFEDKVQDQLKQPVFIYGHPVEISPLAKKNADDPRFTDRFELYILGNEYGNAF TELNDPIDQRQRFEAQVAEREAGNEEAEGIDEDYIEALEYGMPPTGGLGIGIDRLVMLLT DAPSIRDVLLFPTMRPID Prediction of potential genes in microbial genomes Time: Fri May 27 06:30:32 2011 Seq name: gi|269838508|gb|ACXB01000003.1| Pediococcus acidilactici 7_4 cont1.3, whole genome shotgun sequence Length of sequence - 1940 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 73 - 132 7.4 1 1 Op 1 . + CDS 181 - 1041 806 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase 2 1 Op 2 . + CDS 1063 - 1939 562 ## COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases Predicted protein(s) >gi|269838508|gb|ACXB01000003.1| GENE 1 181 - 1041 806 286 aa, chain + ## HITS:1 COG:YPO2805 KEGG:ns NR:ns ## COG: YPO2805 COG0656 # Protein_GI_number: 16123003 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Yersinia pestis # 1 281 15 295 297 327 55.0 2e-89 MKYVELNDGNQMPQLGFGVFQVSDLNQAEQAVSDALDTGYRLIDTAAAYGNEEAVGVAIK KSGIDRKEIFVTSKLWVDHFTYEKAQQGIDESLTKLGLDYIDLYLLHQPYGDVAGAWRAL IEAKEAGKIKSIGVSNFAPDQLMNLELMSEVKPAVNQIEVSPWYQESEAVDFAQAQNVQV EAWAPFAEGKHNIFSNETIAEIGQKYGKSNGQIILRWLLQRGIVVIPKSVHKTRMAENIN VFDFELSDDDMQKMNSLDKNESQFFDHRDPKAIESIFGESLKALRK >gi|269838508|gb|ACXB01000003.1| GENE 2 1063 - 1939 562 292 aa, chain + ## HITS:1 COG:L190278 KEGG:ns NR:ns ## COG: L190278 COG1063 # Protein_GI_number: 15673531 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Threonine dehydrogenase and related Zn-dependent dehydrogenases # Organism: Lactococcus lactis # 1 292 1 293 348 337 58.0 2e-92 MKAAVFIEPGKVEVKEVLKPQIDGKNQAIIRIVRASVCGSDLWWYRGISERQTDTLIGHE AIGVVEETSADVDNIKVGDFVVVPFTHGCGHCVACLNGFEGNCLNQKPGNNGGYQAEFMK YEPANSGLVKIPGKPDDYPDEQLASFQTLSDVMATGYHAAVSAEVQKGSTVAVIGDGAVG LCGVIGAKLLGASKIILLSHHKNRAELGKTFGATDIVDGRGDEAIEDVLKLTKENAGADA VLECVGATSAIEQAGQIARPGAVIGRVGVPQTEPRSNQLFWKNVGLRGGIAS Prediction of potential genes in microbial genomes Time: Fri May 27 06:30:37 2011 Seq name: gi|269838507|gb|ACXB01000004.1| Pediococcus acidilactici 7_4 cont1.4, whole genome shotgun sequence Length of sequence - 17920 bp Number of predicted genes - 19, with homology - 18 Number of transcription units - 6, operones - 2 average op.length - 7.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 54 - 113 2.4 1 1 Tu 1 . + CDS 144 - 785 562 ## COG0702 Predicted nucleoside-diphosphate-sugar epimerases + Term 828 - 877 -0.6 + Prom 798 - 857 8.0 2 2 Tu 1 . + CDS 944 - 1504 462 ## COG3548 Predicted integral membrane protein + Term 1708 - 1740 -0.8 + Prom 1591 - 1650 7.1 3 3 Tu 1 . + CDS 1881 - 2078 217 ## PEPE_0120 hypothetical protein + Term 2191 - 2231 -0.7 + Prom 2763 - 2822 11.5 4 4 Op 1 . + CDS 2856 - 3587 588 ## gi|270290215|ref|ZP_06196440.1| predicted protein 5 4 Op 2 . + CDS 3587 - 4264 504 ## SCAB_12061 hypothetical protein 6 4 Op 3 . + CDS 4265 - 5596 864 ## COG0477 Permeases of the major facilitator superfamily 7 4 Op 4 . + CDS 5583 - 6557 462 ## COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases 8 4 Op 5 . + CDS 6611 - 6946 316 ## COG0599 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit 9 4 Op 6 . + CDS 6965 - 7087 58 ## 10 4 Op 7 . + CDS 7023 - 7454 287 ## COG1959 Predicted transcriptional regulator + Term 7624 - 7679 -0.8 + Prom 8153 - 8212 7.2 11 5 Op 1 8/0.000 + CDS 8410 - 9273 697 ## COG1161 Predicted GTPases 12 5 Op 2 2/0.000 + CDS 9260 - 10027 891 ## COG0164 Ribonuclease HII 13 5 Op 3 13/0.000 + CDS 10073 - 10942 762 ## COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake + Prom 11023 - 11082 6.3 14 5 Op 4 1/1.000 + CDS 11115 - 13187 1523 ## COG0550 Topoisomerase IA 15 5 Op 5 4/0.000 + CDS 13259 - 14164 707 ## COG4974 Site-specific recombinase XerD 16 5 Op 6 24/0.000 + CDS 14185 - 14739 582 ## COG5405 ATP-dependent protease HslVU (ClpYQ), peptidase subunit 17 5 Op 7 . + CDS 14743 - 16155 1225 ## PROTEIN SUPPORTED gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 18 5 Op 8 . + CDS 16168 - 17052 794 ## COG2017 Galactose mutarotase and related enzymes + Term 17063 - 17102 3.0 - Term 17045 - 17095 8.8 19 6 Tu 1 . - CDS 17098 - 17709 629 ## COG0344 Predicted membrane protein - Prom 17791 - 17850 7.2 Predicted protein(s) >gi|269838507|gb|ACXB01000004.1| GENE 1 144 - 785 562 213 aa, chain + ## HITS:1 COG:XF1747 KEGG:ns NR:ns ## COG: XF1747 COG0702 # Protein_GI_number: 15838348 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Predicted nucleoside-diphosphate-sugar epimerases # Organism: Xylella fastidiosa 9a5c # 1 213 1 212 213 120 32.0 1e-27 MTKYAILAATGQIGQLTTQYLFDNSSADLVLFGHDVEQRLKDFDGNRVSFVNGDLKDPDA LETALKDVDAVFLAYVATPDIINPLIKVMDNSGVNRLVVMSVPDVYEEVAGPFQAWYREH TGLVWKTNYVDTVNAVENSDLDYVILRTTWLYNDASKTEVTVTKKGEPFKSAQITREAVA NFAAELLTDQLDYHRESLGIGEPDTEWTKPSFY >gi|269838507|gb|ACXB01000004.1| GENE 2 944 - 1504 462 186 aa, chain + ## HITS:1 COG:L142704 KEGG:ns NR:ns ## COG: L142704 COG3548 # Protein_GI_number: 15672127 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Lactococcus lactis # 1 183 1 180 183 75 34.0 7e-14 MSKERLTAFEDAILAIIMTILVLELRKPSEITLQGFWSLHANFFAYALSFFWIGTMWVSH HNNWQHVQKINLNTVMLTLVLLFLASLFPYTTSIVSDHFSNVTAQVFYGIIIILISLLNV VISVNLGKLNPKAHFGLLYTIPTRIVYLDLLFKVLGLILAVTIYPPAMMISIFCASSLLL LSFNRA >gi|269838507|gb|ACXB01000004.1| GENE 3 1881 - 2078 217 65 aa, chain + ## HITS:1 COG:no KEGG:PEPE_0120 NR:ns ## KEGG: PEPE_0120 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 64 1 64 81 85 67.0 7e-16 METLTGVITSDIKSISYSPILFYFRLTDRNDKNYNLLLHRHALNFFLQAKMGSMVEVQVL KNKRG >gi|269838507|gb|ACXB01000004.1| GENE 4 2856 - 3587 588 243 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|270290215|ref|ZP_06196440.1| ## NR: gi|270290215|ref|ZP_06196440.1| predicted protein [Pediococcus acidilactici 7_4] # 1 243 1 243 243 446 100.0 1e-124 MTLNTDINLARKFILTLDDQHKNQQGYIYVNSKNDLDLFFYSLKGLFTTDTDETIDQEFK EFENRRINSVLKEMITNRDQILSCYEDMPLIIDEENVGEMTRFQVKKESVHKKEQKNVMI KKLLANESNELNIFIGNSSETSEISLDHIHRGHVEAIYLSEICRQAGMETLNQKIGNNAT YYISQEVKKYQNKVNREEDVIVETLPIIGTKKRGFGLCLYSLFQNHEICMSGYYLVAYSR GTE >gi|269838507|gb|ACXB01000004.1| GENE 5 3587 - 4264 504 225 aa, chain + ## HITS:1 COG:no KEGG:SCAB_12061 NR:ns ## KEGG: SCAB_12061 # Name: not_defined # Def: hypothetical protein # Organism: S.scabiei # Pathway: not_defined # 2 216 9 221 234 147 38.0 4e-34 MLELIAVDIDGVLLEDTFSPVLYRLTQKFHVAYTKELENNTFSQKRKNAALYLKQALNLP KDTSLDQVLNMYFEERTRYLADEGHDNPILDGVEIFVKQLSELGTALICYGGLPYNQINE RFLPILEKFDRYICTNDFRPGLNEIVKNIYHLKYDEVLFIDDVNRVAKEAKKYKIPFIGM PADNDWGFQKEEMEETQVKYIVGTVKDITPAFLENVINDQKIWSE >gi|269838507|gb|ACXB01000004.1| GENE 6 4265 - 5596 864 443 aa, chain + ## HITS:1 COG:L127813 KEGG:ns NR:ns ## COG: L127813 COG0477 # Protein_GI_number: 15673857 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 1 441 1 441 442 248 36.0 3e-65 MKNKIIMFLALIGAFLTVLDTGILYTGTVKLAQDLSLSASQLSWVQVAYVLTYAGFMLLG GKLGDLYGRKRFFIFSLILFAIGSLAVGLSTNAAMIISFRAVQGVGAAILQPTCLAIITD TFDGDELQKVIGYYAAVIGAGAAVGIAFGGFCAAFVSWRLGFLINAPLSVVMSIIAFKTL TNTRKQPGKLDWIGTILSVLAMSSLSYGIAGSPKPILTLIASLVLWVVFIISQTKVSQPT MPLIIFKNSKRVGSYIGSLLFSAAGVIFWFYIPQFMQEQMHYSAFVSAIGMIPMSILLFF VALKSQSIVRRFSNNKVLILGLILVLISALGMAFLNNATNYWLIFPFTLTFGTGFALALT PLTASSMAKITPNIRGAASGVYNTTRQFGAALGLAWGLAVTSGISETSHIFKNVMMLAAF LIVIGILCVCALVLKKENNNEIC >gi|269838507|gb|ACXB01000004.1| GENE 7 5583 - 6557 462 324 aa, chain + ## HITS:1 COG:AGpA656 KEGG:ns NR:ns ## COG: AGpA656 COG0604 # Protein_GI_number: 16119675 # Func_class: C Energy production and conversion; R General function prediction only # Function: NADPH:quinone reductase and related Zn-dependent oxidoreductases # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 16 320 40 355 359 138 29.0 2e-32 MKSVKYIGGTIPSKSLIFTDIPKPKIKARQILVRVKFSTLNVIDFERFKHPNKMSIFAKI INFVQKKNMPLGGEISGIVAEIGSEVSGFQVGDEVYGSTTGVLQYGGWAEYVICESNMLV LKPRNLSFEAAAALPLSGQTAIGAVKAASIKTGDKVLLYGSSGGVGLYTLQILKAIGTEV TAVCSGRNIKNAWHYQADYVINYEVQDFDEYTNNYQIIISVNGYQKIGKFLNHLKFKGSY LVVGNVKQLIRASIRRLTNKRIKTYSFALNNGNGQFLRDLNQLVLKGEVVPYIDRTFSIR KINDAINYVITQHTKGKVVILMDF >gi|269838507|gb|ACXB01000004.1| GENE 8 6611 - 6946 316 111 aa, chain + ## HITS:1 COG:L35675 KEGG:ns NR:ns ## COG: L35675 COG0599 # Protein_GI_number: 15673958 # Func_class: S Function unknown # Function: Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit # Organism: Lactococcus lactis # 18 104 32 118 122 79 37.0 2e-15 MGKEGEQTLNNFGRDFEDIGKYIIEFVFADLGTRGILKTREREMITIVSLISQGDTASQL KMHYKSALKAGMDKKELIEVILQCIPHVGFPKVLNAVQIAQGVLNQSEYEN >gi|269838507|gb|ACXB01000004.1| GENE 9 6965 - 7087 58 40 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLYCYGRVKNELNYRKLVNYGVLFWFFSIIGDFVLYQVKN >gi|269838507|gb|ACXB01000004.1| GENE 10 7023 - 7454 287 143 aa, chain + ## HITS:1 COG:lin0640 KEGG:ns NR:ns ## COG: lin0640 COG1959 # Protein_GI_number: 16799715 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Listeria innocua # 1 143 1 132 138 57 28.0 7e-09 MAYSFGFSQSLEILFYIKLKTEMEEEKYLTIQQISKKTNIPIPSLKRLVGLLKKSDFLAS KKGLNGGLALAKSADRIRLYDVFTAIEGTTPLFKQYDNFDVSAFKHKKEVTYMLIESKKI FENAEQSMLDELKKKTLADLFVE >gi|269838507|gb|ACXB01000004.1| GENE 11 8410 - 9273 697 287 aa, chain + ## HITS:1 COG:L128951 KEGG:ns NR:ns ## COG: L128951 COG1161 # Protein_GI_number: 15673276 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Lactococcus lactis # 3 278 2 277 282 305 53.0 6e-83 MPIIQWYPGHMAKAIRQVEEKLKLVDVVFELVDARIPVSSRNPMIESVIKDKPHLLILTK ADLADPQETQRWLEYFRKNGDHAVALNSKEPSTEKIILKHTRAILANKLENWESRGIKKT EIKSMCIGIPNVGKSTLLNHLVNKKVAITGDRPGVTKKQQWLKSRQGLYLLDTPGILWPK FEDQSVGSKLAFTGAIKDNLYANDDVALFGLQIFSEKYRNGLIERYHLTDEDFDQPLPEL LLLITQKLGMRDDYDRASQRILLDARKGKLGRFNLDFVEELNDRGDD >gi|269838507|gb|ACXB01000004.1| GENE 12 9260 - 10027 891 255 aa, chain + ## HITS:1 COG:SP1156 KEGG:ns NR:ns ## COG: SP1156 COG0164 # Protein_GI_number: 15901021 # Func_class: L Replication, recombination and repair # Function: Ribonuclease HII # Organism: Streptococcus pneumoniae TIGR4 # 1 253 1 253 259 250 51.0 2e-66 MATIKEIKERLVTVQDVNDPYFLDLADDSRAGVQKLLRQKEKALQKVAEQRLAFQKRFSL ENELWQSGKQFVAGIDEVGRGCLAGPVVTAAVVLDSHFDLVEVNDSKQLSLKLRESLYAQ ILSEAVSVGIGVRSNQQIDQMGILNATKAAMNDAISHLNVTPEHLLIDAVQVPTSIPKTV MYKGDAKSISIAAASIVAKVYRDHLMRSYNKIYPGYGFDQNVGYGTKQHLEGLKELGITP LHRLTFEPVPEFVRQ >gi|269838507|gb|ACXB01000004.1| GENE 13 10073 - 10942 762 289 aa, chain + ## HITS:1 COG:lin1313 KEGG:ns NR:ns ## COG: lin1313 COG0758 # Protein_GI_number: 16800381 # Func_class: L Replication, recombination and repair; U Intracellular trafficking, secretion, and vesicular transport # Function: Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake # Organism: Listeria innocua # 4 284 6 280 286 202 41.0 7e-52 MELRDFLIRIKIGTTFGIKKQSQIYQTVRDQPELSISEWVHTSPLIADEQRSDLVNYLHS SKLKRKIHENEQNGGILTIADPAYPDILREIYCPPTVLFYRGRLDLLQEPRMIAIVGARN MTRYGMATVKKLVPGLLEHQLVTVSGLARGVDAMTHQATVDGAGKTIAVIGNGLDVTYPK QNAVLQDQVQQTGLLLSEYAQGARPLRHHFVERNRIIAGLAQATCIIEAKQKSGSLITAS LALGENRNVLAVPGSIFSENSRGTNELIAAGARPLISLNDVLEEVGLQR >gi|269838507|gb|ACXB01000004.1| GENE 14 11115 - 13187 1523 690 aa, chain + ## HITS:1 COG:SPy1164_1 KEGG:ns NR:ns ## COG: SPy1164_1 COG0550 # Protein_GI_number: 15675140 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Streptococcus pyogenes M1 GAS # 7 572 27 589 589 730 66.0 0 MPTTKKNLVIVESPSKAKTIEKYLGRSYKVVASLGHIRDLPKSKMGVDIENDYEPHYISI RGKGDTIKNLRKEAKKAKKVYLASDPDREGEAIAWHLSYLLGLDPKDKNRVVFNEITKDA VKNAFKTPRSIDTTLVDAQQARRILDRLVGYSISPLLWQKVKKGLSAGRVQSIALSLIIK REKEIDAFKPEEYWSIDSEFKKGRSKFKASFYGMHHKKMKLPNNEKVQEVLKNIDPKGDF DITEVKRRERKRYPAAAFTTSSMQQEANKTLNFRTRKTMMTAQQLYEGINIGKEGTVGLI TYMRTDSTRISEVAKHETSLFIHDQYGAEYAATKPRKGKMPEGAQDAHEAIRPSSVKRTP EQIKEYLNNDQFKLYKLIWARFVASQMTPEVSDTMTVTIEQNDVQYRANGSKTKFEGFTK VYKTNKDKDNVLPNLAEGDQVKLVNNNPNQHFTQPPARYTEAALIKALEENGVGRPSTYA PTLDTIQRRYYVKLVSRRFEPTELGEIVNEIIYDFFPDIVNIDFTAGLEKDLDSIEEGKE NWIKVVDRYYKPFAKELEKAQGQIEKIQIKDEPAGFNCEICGAPMVVKMGRYGKFFACSR FPDCRNTQAIVKEIGVTCPQCHKGQIIERKSKRGRVFYGCSRYPDCEFVSWDKPIARECP VCHSFLIEKKIKGGKQIVCPNHDYEEEPQK >gi|269838507|gb|ACXB01000004.1| GENE 15 13259 - 14164 707 301 aa, chain + ## HITS:1 COG:lin1316 KEGG:ns NR:ns ## COG: lin1316 COG4974 # Protein_GI_number: 16800384 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinase XerD # Organism: Listeria innocua # 5 298 9 300 300 292 51.0 4e-79 MDWIEQFKRYLTVERQYSDKTVTAYLEDLQEFQKFLQTTGNKPELLAVDRFDANVFMSYL FDQNLKRTSISRKVSSLRAFYRFLIKNDVIAKNPFEFVQLKKHADHLPRFFYEKEMNQLF DTVYQDQGPLHLRNAALLEVLYGTGMRVSECTNLRWTDIDFSMQTILVLGKGNKERYVPF GRYAKHALEDYHQNEWTSLLEKYHQTHQYVFVNHYGQPITVAGVEYVLNQIIKNSSLNGK IHPHMLRHSFATAMLNNGADLRTVQELLGHASLSTTQIYTHVTKEKLQESYRKFFPRSTK S >gi|269838507|gb|ACXB01000004.1| GENE 16 14185 - 14739 582 184 aa, chain + ## HITS:1 COG:BH2464 KEGG:ns NR:ns ## COG: BH2464 COG5405 # Protein_GI_number: 15615027 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ATP-dependent protease HslVU (ClpYQ), peptidase subunit # Organism: Bacillus halodurans # 1 176 1 176 180 221 64.0 8e-58 MPVKFDATTIIAINHNGENAMAGDGQVTMGEKFIMKGTARKVRRIYDGKVIVGFAGSVAD AFNLEEKFEKKLSEYSGNLQRASVELAKIWRGDQQLQKLEAMLIVMDQKEMYLVSGSGEV IAPDDGILAIGSGGNFALAAAKALKQHAKDMTAKEIAKTAINVAGDIDIFTNHNVIALDF KEDN >gi|269838507|gb|ACXB01000004.1| GENE 17 14743 - 16155 1225 470 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 [Bacillus selenitireducens MLS10] # 2 470 4 466 466 476 54 1e-134 MLKENLTPQEIVNQLDEFVIGQKSAKRAVAVALRNRYRRLQLSADMQEDITPKNLLMIGP TGVGKTEIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMVRDLVENAVHLEEERAFKD VRMEAAKNADHRIVELLVPVPEDPKQNSAVDFQNMMNMFTQMQQGKTPTDFQPSGQNVPD DIKEKRMDTASKLAKGLLENEMVTIEMDDPKQNNNNNMMNQMGIDLNESLSGLLPKKKIS RTVPVREAREILIKEESDKLVNHGDLYHNAIQRAENTGIIFIDEIDKITGSGQNTSSDVS RQGVQRDILPIVEGSQVNTKYGLVDTSHILFIGSGAFHESKPSDLIAELQGRFPIRVELN DLSKDDFVKILTEPKNALVKQYIALIGTDNVKVTFTIEAIERIAEIAEQVNHETENIGAR RLHTILEKLLEDILFEGPSMEMGEVTITEKYVDSKIGSIAGNKDLSEFIL >gi|269838507|gb|ACXB01000004.1| GENE 18 16168 - 17052 794 294 aa, chain + ## HITS:1 COG:CAC3032 KEGG:ns NR:ns ## COG: CAC3032 COG2017 # Protein_GI_number: 15896283 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose mutarotase and related enzymes # Organism: Clostridium acetobutylicum # 1 292 1 295 298 195 37.0 9e-50 MAAVLKNKFLTVTIDELGAELTSVKSNDYQIEYVWQADPQIWGRHAPVLFPFVGRLKDDQ FKVNGMRYPMGQHGFARDMRFTVISASDEQVVMELKSNAETREKFPFDFDLRLHFELHDH ELTERYEVHNPAEKDGLWFAIGGHPGFNLNLGDPRIGMAESQMRIAPKKVFKQIPLQAPY TDPKHLQDLDATQPIALSHELFAEDALILDLQRKSTTVMLENSVNDHGVALTVEDAPYLG IWSPYPAEGDFVCLEPWWGIADTVDFNGELSEKLGMNQLAAGETFNQSFTISFF >gi|269838507|gb|ACXB01000004.1| GENE 19 17098 - 17709 629 203 aa, chain - ## HITS:1 COG:L5517 KEGG:ns NR:ns ## COG: L5517 COG0344 # Protein_GI_number: 15672960 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 1 195 1 205 213 162 48.0 5e-40 MLKILIMLVIAYLLGSIPSGVLVAKHFNKDLHKEGSGNTGTTNTFRVLGVKPGLLVLLMD LLKGTLATLQPIVFHVTTVNPLIIGLAAILGHTFSVFDEFRGGKAVATSAGMLLAYNPSY FIIACCLFVGFIYISSMVSFSSIVSAILLVIISFFYHDWVLSVVAIGLTSFIIYRHRSNI SRILSGNENLVPFGIYYRLKHKG Prediction of potential genes in microbial genomes Time: Fri May 27 06:31:11 2011 Seq name: gi|269838506|gb|ACXB01000005.1| Pediococcus acidilactici 7_4 cont1.5, whole genome shotgun sequence Length of sequence - 46755 bp Number of predicted genes - 44, with homology - 42 Number of transcription units - 23, operones - 9 average op.length - 3.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 24/0.000 + CDS 2 - 2035 1940 ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit 2 1 Op 2 . + CDS 2054 - 4507 2109 ## COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit + Term 4513 - 4551 -0.9 + Prom 4510 - 4569 2.5 3 2 Op 1 . + CDS 4603 - 5589 798 ## COG0583 Transcriptional regulator 4 2 Op 2 . + CDS 5582 - 6514 1114 ## COG1227 Inorganic pyrophosphatase/exopolyphosphatase + Term 6635 - 6677 9.5 - Term 6621 - 6665 6.1 5 3 Tu 1 . - CDS 6738 - 7538 560 ## LVIS_0817 transcriptional regulator - Prom 7576 - 7635 5.9 6 4 Op 1 . + CDS 7634 - 7933 248 ## COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase 7 4 Op 2 . + CDS 7915 - 8952 575 ## COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase + Prom 9001 - 9060 7.5 8 5 Tu 1 . + CDS 9204 - 11735 1574 ## COG0178 Excinuclease ATPase subunit + Prom 11822 - 11881 6.2 9 6 Op 1 6/0.000 + CDS 11910 - 13202 1397 ## COG2610 H+/gluconate symporter and related permeases 10 6 Op 2 . + CDS 13218 - 14372 1444 ## COG1929 Glycerate kinase + Term 14486 - 14543 3.3 + Prom 14388 - 14447 5.6 11 7 Op 1 5/0.000 + CDS 14566 - 15018 466 ## COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase 12 7 Op 2 . + CDS 15022 - 15537 356 ## COG0225 Peptide methionine sulfoxide reductase - Term 15537 - 15599 12.9 13 8 Tu 1 . - CDS 15600 - 17102 1648 ## COG0531 Amino acid transporters - Prom 17149 - 17208 11.1 + Prom 17417 - 17476 5.6 14 9 Op 1 17/0.000 + CDS 17504 - 17869 165 ## PROTEIN SUPPORTED gi|148994682|ref|ZP_01823786.1| 50S ribosomal protein L13 15 9 Op 2 2/0.000 + CDS 17850 - 18371 293 ## PROTEIN SUPPORTED gi|148994682|ref|ZP_01823786.1| 50S ribosomal protein L13 16 9 Op 3 2/0.000 + CDS 18331 - 18924 480 ## COG0302 GTP cyclohydrolase I 17 9 Op 4 . + CDS 18917 - 19582 693 ## COG0285 Folylpolyglutamate synthase 18 9 Op 5 . + CDS 19609 - 20220 348 ## COG0285 Folylpolyglutamate synthase 19 9 Op 6 . + CDS 20201 - 20797 210 ## PROTEIN SUPPORTED gi|74313511|ref|YP_311930.1| putative deoxyribonucleotide triphosphate pyrophosphatase 20 9 Op 7 . + CDS 20809 - 21939 1039 ## COG0294 Dihydropteroate synthase and related enzymes + Term 21997 - 22042 4.3 + Prom 22367 - 22426 4.0 21 10 Tu 1 . + CDS 22454 - 22561 140 ## + Term 22586 - 22631 8.3 - Term 22574 - 22619 8.3 22 11 Tu 1 . - CDS 22629 - 23198 597 ## COG2249 Putative NADPH-quinone reductase (modulator of drug activity B) - Prom 23348 - 23407 7.3 23 12 Tu 1 . - CDS 23535 - 24710 1113 ## COG0477 Permeases of the major facilitator superfamily - Prom 24926 - 24985 7.0 - Term 24916 - 24971 4.1 24 13 Tu 1 . - CDS 25044 - 25292 75 ## - Prom 25497 - 25556 5.8 + Prom 25346 - 25405 4.8 25 14 Tu 1 . + CDS 25425 - 28082 1628 ## COG0474 Cation transport ATPase + Prom 28138 - 28197 8.3 26 15 Tu 1 . + CDS 28233 - 29258 784 ## COG1316 Transcriptional regulator + Term 29359 - 29394 -0.5 - Term 29663 - 29720 1.0 27 16 Tu 1 . - CDS 29742 - 31253 1316 ## COG1288 Predicted membrane protein - Prom 31297 - 31356 5.6 28 17 Tu 1 . - CDS 31373 - 31648 204 ## gi|270290254|ref|ZP_06196479.1| predicted protein - Prom 31732 - 31791 4.8 + Prom 31586 - 31645 7.0 29 18 Tu 1 . + CDS 31811 - 32743 889 ## COG1609 Transcriptional regulators + Term 32788 - 32834 9.8 - Term 32772 - 32826 17.3 30 19 Tu 1 . - CDS 32933 - 33289 229 ## PEPE_0950 hypothetical protein - Prom 33418 - 33477 8.8 + Prom 33353 - 33412 6.3 31 20 Op 1 . + CDS 33472 - 33873 266 ## gi|270290257|ref|ZP_06196482.1| predicted protein 32 20 Op 2 . + CDS 33873 - 34223 207 ## COG0239 Integral membrane protein possibly involved in chromosome condensation - Term 34136 - 34182 6.6 33 21 Op 1 . - CDS 34229 - 35092 706 ## COG1307 Uncharacterized protein conserved in bacteria - Prom 35117 - 35176 1.8 34 21 Op 2 . - CDS 35178 - 35588 430 ## PEPE_0946 transcriptional regulator - Prom 35628 - 35687 7.0 + Prom 35632 - 35691 9.3 35 22 Tu 1 . + CDS 35722 - 37437 1012 ## COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP + Term 37484 - 37520 -0.8 - Term 37360 - 37396 -0.6 36 23 Op 1 24/0.000 - CDS 37560 - 40019 1923 ## COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ) 37 23 Op 2 . - CDS 40021 - 41106 1104 ## COG0505 Carbamoylphosphate synthase small subunit 38 23 Op 3 4/0.000 - CDS 41135 - 41668 654 ## COG2065 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase 39 23 Op 4 15/0.000 - CDS 41749 - 42657 805 ## COG0564 Pseudouridylate synthases, 23S RNA-specific 40 23 Op 5 . - CDS 42667 - 43119 427 ## COG0597 Lipoprotein signal peptidase 41 23 Op 6 . - CDS 43132 - 44799 1854 ## COG2759 Formyltetrahydrofolate synthetase 42 23 Op 7 . - CDS 44806 - 45189 222 ## PEPE_0938 pore-forming protein 43 23 Op 8 . - CDS 45189 - 46295 892 ## COG0665 Glycine/D-amino acid oxidases (deaminating) 44 23 Op 9 . - CDS 46305 - 46748 340 ## COG0116 Predicted N6-adenine-specific DNA methylase Predicted protein(s) >gi|269838506|gb|ACXB01000005.1| GENE 1 2 - 2035 1940 677 aa, chain + ## HITS:1 COG:lin1325 KEGG:ns NR:ns ## COG: lin1325 COG0187 # Protein_GI_number: 16800393 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Listeria innocua # 2 651 3 650 655 889 69.0 0 GKTTYDDSSIQVLEGLEAVRKRPGMYIGSTDGRGLHHLVYEIVDNAVDEALAGYGKEINV TIRSDNSITVVDHGRGMPVGMHKSGKPTAEVIFTVLHAGGKFGQGGYKTSGGLHGVGASV VNALSEKLTVEIVRDKMKYEENFVNGGHPVGTLKKVGKTKESNGTTVTFKPDPTIFTTTV FNFNTLAVRLRESAFLLKGVKITLTDERAGHEQAEEYLYEEGIKEFVEYLNEDKDTLGNI MYFDGSKHGIEVEIAGQYNDGYSETVLSFVNNVRTKDGGTHEVGMRSGWTKAFNEFARKV GLLKEKDKNLEGSDVREGLSAVISIRVPEELLEFEGQTKEKLGTPEARPIVEAVVSEQLG FFLMENGEFAQQLVRKAINARDARVAARKARDESRTGKRRKKQDRILSGKLTPAQSKNAK KNELFLVEGDSAGGSAKQGRNRKFQAILPLRGKVLNTEKAKLQDIVKNEEINTIIYTIGA GVGPEFKVEDSNYDKVIIMTDADTDGAHIQTLLLTFFYKYMRPMIDAGKIYIALPPLYKL QKGANKKTKIEYAWTDEELEEVSKKMGRGFSLQRFKGLGEMNADQLWETTMNPDTRTLVR VRIDDDTLAERRVTTLMGDKVEPRRKWIESNVSFTLEEDGSLLDNEAVKAEHESKPTTPK GKENETFEELKLDLENN >gi|269838506|gb|ACXB01000005.1| GENE 2 2054 - 4507 2109 817 aa, chain + ## HITS:1 COG:lin1326 KEGG:ns NR:ns ## COG: lin1326 COG0188 # Protein_GI_number: 16800394 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit # Organism: Listeria innocua # 1 806 1 804 818 863 58.0 0 MADNQSKIQELALEDIMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNKDGNTHD KAFRKSAKSVGNVMGNFHPHGDSSIYEALVRMSQNWKLRVPLIEMHGNNGSIDNDPPAAM RYTEARLSQAAEEMLQDIDKETVDMVLNFDDTEYEPTVLPARFPNLLVNGATGISAGYAT EIPPHNIGEVIDAVLYTIKHPDPSLEKLMEFVKGPDFPTGGIVQGRDGLKQAYKTGRGRV VVRSRTAIEQLRGSKQQIRITEIPYEVNKAQLVKKIDEIRVMKKIDGIAEVRDESDREGL SIAIELKKDVDAQGVLNYLLKNTDLQVSYNFNMVAINKLRPERMGLKPIIQAYVDFQKEV ITKRTQFNLQKAEARLHIVDGLIKALSILDQVIKTIRGSKDKKDAKHNLVERFDFSEKQA ESIVSLQLYRLTNTDVTELKTEAQQLNESIAEFNQILNDPAKLSRVLSAELRKVKKQYAT PRLSEIQDEIEEIKIDRTVTVPEEQVMVLVSQAGYLKRSSLRSYKASADEDGLKDGDQPV FKHELSTLDHLLMFTNKGNLIYRPVYEITEARWKDTGEHVSQTIGLADDEIILKAYDVKN FKQPINFLIATDDGYIKQTALQDLKPGRTYRKKAITYAKLKKQGAKVVNVVQVDPKTAPA TILLASEHGYGLRYDLVEIPTVGPRAAGVKSMDLRDDQVANFVLVNDEDQIGLITNRGSF KRMKVSEISVTSRARRGVQILRELKKEPHRVVDIAVVNEHQAFEVLTSRGLVHDILPMEH PLNERYSNGSFVIDIDSEGNPLSMRLKTLDPAVNEAK >gi|269838506|gb|ACXB01000005.1| GENE 3 4603 - 5589 798 328 aa, chain + ## HITS:1 COG:BS_ywbI KEGG:ns NR:ns ## COG: BS_ywbI COG0583 # Protein_GI_number: 16080882 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus subtilis # 12 304 4 292 301 113 25.0 6e-25 MRTKQEKIFSSKALTYFLQLSDTMNYTQAAQILGITQPALTQQIKKLEHTIGAPLFYSVG KKLRLTDAGYTMLSASHEINRVLNNATDEIQQSSNASQGEISIGILSSIETQIFEDFIAH YYQKEPGIKIIVHMLTRKEIWENLENNKVDLAIMYLPDDSIKNWKPYQSRKITSESLVFI HHDEKIARQKRIKLQKTINYNWVTYPEEFYLDGVIKEAYKNALVNRPHSVACFTTPDQIR HFVNATDVVTALPESYVMAHPRKKGVFTAKLDPVISFDLDFVFRRDKDSIPRIESFLNEF EAYLAKKGYTERLEEITNNRLKEHSDND >gi|269838506|gb|ACXB01000005.1| GENE 4 5582 - 6514 1114 310 aa, chain + ## HITS:1 COG:BS_yybQ KEGG:ns NR:ns ## COG: BS_yybQ COG1227 # Protein_GI_number: 16081107 # Func_class: C Energy production and conversion # Function: Inorganic pyrophosphatase/exopolyphosphatase # Organism: Bacillus subtilis # 1 308 1 306 309 309 57.0 4e-84 MTKQLIFGHSNPDTDAIVAAKAFAYYQTQMGVKDVEAVALGNPNPETEYVLNHFNEPAPR VVETVANEVDSVMLVDHNEKQQSAQDVDQVTVTAVVDHHRIANFETAQPLFYRAEPVGCT STILTKMFKEAGIEIPAKIAGLMLSAIISDTLLLKSPTTTDDDRKAVETLAKIADVNVEE YGLAMLKAGTDLSSKSELELVDGDAKSFDMGGKKVRIGQVNTVDLDDVFAREDALVKTME DENQKNGYDMFLLLATNILTSDSRLLVVGEPKEMVEKAFDVKLSDHNIADLPGVVSRKKQ VVPPLMKAFE >gi|269838506|gb|ACXB01000005.1| GENE 5 6738 - 7538 560 266 aa, chain - ## HITS:1 COG:no KEGG:LVIS_0817 NR:ns ## KEGG: LVIS_0817 # Name: not_defined # Def: transcriptional regulator # Organism: L.brevis # Pathway: not_defined # 1 265 1 267 267 185 36.0 1e-45 MLKISEMAKLADTTRRTLIFYDEKDVFKPARKTSTGYRYYTYDQLYDLMFIRGLRSLDIP LDKIKKIKNTNEATSELLATQKQIDQKLSELIKIKKIINKRLEKNNCLKLENLYQPIIKE HNQLFFWCSPQSISCTAEEVAEMFSKFYKELDDLAVVNTGKSGFLTNLSLKDPNGYDEAS FRIIKENDLAKRSAVMPMIERPSGKYVSICIENTLKGIHKGLNQLKIFCTQNNLKTNEYL WQINASDDLVENGASKYGWLEYSIIN >gi|269838506|gb|ACXB01000005.1| GENE 6 7634 - 7933 248 99 aa, chain + ## HITS:1 COG:CAC0326 KEGG:ns NR:ns ## COG: CAC0326 COG2256 # Protein_GI_number: 15893618 # Func_class: L Replication, recombination and repair # Function: ATPase related to the helicase subunit of the Holliday junction resolvase # Organism: Clostridium acetobutylicum # 3 94 5 95 443 113 58.0 1e-25 MRQGSLFENKFNNTPLANRVRPSNLDEFVGQEHLLGPGKILREIIENDQLSSMIFWGPPG VGKTTLAQIIANKTNSKFLTFSAVDSSISKIKKLCNKLN >gi|269838506|gb|ACXB01000005.1| GENE 7 7915 - 8952 575 345 aa, chain + ## HITS:1 COG:CAC0326 KEGG:ns NR:ns ## COG: CAC0326 COG2256 # Protein_GI_number: 15893618 # Func_class: L Replication, recombination and repair # Function: ATPase related to the helicase subunit of the Holliday junction resolvase # Organism: Clostridium acetobutylicum # 1 338 96 433 443 447 63.0 1e-125 MQQAELDREIGQKTLVFVDEIHRFNKSQQDAFLPYVEKGSIILIGATTENPSFEVNSALL SRCKVFVLKPLEQGDLVKLIQNVISNSQAFDNQKIKIEENQINAIANFADGDARKALNIL EMAVLNGKKQGEAITITKDDLGQLISRKFVLYDKNGEEHYNIISALHKSMRNSDVDAAIY WLSRMLEGGEDPLYIARRLVRFASEDVGLADPNALNITINVFQACQFLGMPECDVHLVEA VTYLSLAPKSNAVYKARLAAAKDVKKTANDPVPLQLRNAPTKLMKDLGYGTGYELAHNAK DKLTTMETMPPSVAGNEYYIPTEEGKEGRFKERLKQIKDWHRRHD >gi|269838506|gb|ACXB01000005.1| GENE 8 9204 - 11735 1574 843 aa, chain + ## HITS:1 COG:DRA0188 KEGG:ns NR:ns ## COG: DRA0188 COG0178 # Protein_GI_number: 15807854 # Func_class: L Replication, recombination and repair # Function: Excinuclease ATPase subunit # Organism: Deinococcus radiodurans # 11 830 96 917 922 498 35.0 1e-140 MENQAVLPTQINVRGGRVHNLKNIDVDIPLHQFVAISGLSGSGKSSLAMGILYEEGSRRY LEALSTYTRRRIKLGSQADVTSVEHIPSALALRQRPSVPSERATVGTMSETLNVIRLIFS RLGSPVCPNGHRVKPSLAIAQAMSESGDAMGRITCPVCGVAFYVPSAEQFSFNSDGACER CQGTGKVRQLDEDKLIGDPNLSVADGAVASWHLPGRNFMPKVAEQAGVRINVPYKELTAK EKDFILNGPQKKYRMDFRSGTGRVFHDFNALYENAHQAVLESAKTSKSERAQARISQFFN YSTCPVCHGSRLKPELMQQTTGGKNIAEVSDLALGDLNSWMEKVLAELPADMQKMADSLF AEFSHNLRPLLDLGLDYLTLSRNGNSLSTGELQRIQLARTLRTKTTGVLYVLDEPSIGLH PDNVSGLLKVFRELVDQGNSLVVVDHNLAVIRAADQIIEIGPGSGQEGGYILNQGTPAEL AEDPDSLIGPYLKGTAMIHVRKINKQEPAKLIDFTVKDYYNLQNVRAEIPVNRLTTVTGF SGAGKTSLILDSLVPAITAQSQKRSLPKQVTQLKTPLKKVVSVNAEPIGKSVRSTVATYT NIMNNLRKLYASQPVAKKRKYTASYFSYNNKQGACPTCGGTGSITLDIQFLPDMQQVCPT CHGERYNPEIQQIKWHGLSIVDTLNLDVKSAITVFKDETKIQQDLQNLMEVGLGYLHLGE NTPSLSGGEAQRLKLVKHLNQQQSNTLFVFDEPTIGLHPLDVRVLLQVMQRLLDRQATII VITHDLDLMVNADYLIDLGPTGGQNGGKLVATGQPGELIKDPQSLTTQYLANYWRRFKNT AKD >gi|269838506|gb|ACXB01000005.1| GENE 9 11910 - 13202 1397 430 aa, chain + ## HITS:1 COG:CAC2835 KEGG:ns NR:ns ## COG: CAC2835 COG2610 # Protein_GI_number: 15896090 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism # Function: H+/gluconate symporter and related permeases # Organism: Clostridium acetobutylicum # 1 377 1 374 384 317 55.0 3e-86 MHLLPWWAALVGLAVAIILILKKLNPVYSLMLGAILGCLLGGAGLSQTINVLIQGSQSVM GTVLRVIAAGMLAGVMMESGAADVIAKTIVNKLGDQLALFSLALATMVITGVGVFIPVAV LIVAPIALEVGQRMHISKLALLVALSGGGKAGNIISPNPNSIAAAKGFGVNLSQIMIADF IPSVVGLIVAVLVASFLKHRGSAVLDTDIANLTKPKQPTELPSLATALVTPILAIVLLLL NPLSSLLHIHGLTNLNLDATYVLPFAAVVGTLAMRKGRQLKAYAQSGIARMTDVVMILIG AGMIGALITTSSLPNKIIELIKISHVSGVFLAPLAGILMAAATASTSTGVILATGSFSKA ILGFGVSPLGAAAMVHTGATVIDHLPHGNYFHVTANAMHMEIKERSRSIIYETLVGLSMT IVATVMYGFF >gi|269838506|gb|ACXB01000005.1| GENE 10 13218 - 14372 1444 384 aa, chain + ## HITS:1 COG:CAC2834 KEGG:ns NR:ns ## COG: CAC2834 COG1929 # Protein_GI_number: 15896089 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerate kinase # Organism: Clostridium acetobutylicum # 4 380 7 380 380 355 54.0 6e-98 MKFVIAPDSFKNGMTAKQAANAIKTGLKRIFPEATYTLVPMADGGEGTVQSLVDATKGRL LTAEVTGPLGKPVNATYGILGDQHTGVIEMSQASGIQYVTKTTRNPLKATTFGTGELILK ALDQGVDRLIIGIGGSATNDGGAGMAQALGAELLDDSGQAIQLGGGNLNQLKQIKVNQID PRIKKTEIIIASDVTNPLIGKQGASAVFGPQKGATPEMVQLLDQNLTHYAKVLQRDLGLD LANRPGAGAAGGLGAGLVAFTNATMKKGIDIVIEYSGLKNKAQNADYVFTGEGGIDFQTK YGKTPYGVALTTKAVAPDAPVIVIAGNVGKGIDELYADNAIDAIFTSVSGVKSLREALAT GPHDVAQVAENIARLIKKGIGSVK >gi|269838506|gb|ACXB01000005.1| GENE 11 14566 - 15018 466 150 aa, chain + ## HITS:1 COG:SPy1055 KEGG:ns NR:ns ## COG: SPy1055 COG0229 # Protein_GI_number: 15675047 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Conserved domain frequently associated with peptide methionine sulfoxide reductase # Organism: Streptococcus pyogenes M1 GAS # 10 148 6 144 145 186 61.0 2e-47 MENKKLSKAELKEKLSPEEYAVTQEAATERPFSGRYDNFYEKGVYVDVVSGEPLFSSTAK YDAHCGWPAFSQPIDPQLVSEHRDQSWGMERVEVRSKQADSHLGHVFLDGPQEAGGVRYC INSAALKFIPYDELEEHHLGYLKKIFDKEG >gi|269838506|gb|ACXB01000005.1| GENE 12 15022 - 15537 356 171 aa, chain + ## HITS:1 COG:SPy0466 KEGG:ns NR:ns ## COG: SPy0466 COG0225 # Protein_GI_number: 15674584 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptide methionine sulfoxide reductase # Organism: Streptococcus pyogenes M1 GAS # 5 170 4 168 169 223 66.0 1e-58 MTSTAIFAGGCFWCMVEPFETQPGILNVVSGYTGGHVPNPTYEQVASHTTGHTEAVQITF DPEIISYRELVEIYWQQTDPTDAMGQFQDRGDSYRPVIYVNSEEQCQVALASRKALAESG RFDEPIVTTIEDAQPFYPAEEEHQQFYKKNPRRYQIEEAGGRSQFKQTHWQ >gi|269838506|gb|ACXB01000005.1| GENE 13 15600 - 17102 1648 500 aa, chain - ## HITS:1 COG:ECs5137 KEGG:ns NR:ns ## COG: ECs5137 COG0531 # Protein_GI_number: 15834391 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Escherichia coli O157:H7 # 6 489 20 496 514 451 50.0 1e-126 MGEQKKKLSLGALVLMIFTTIFGFGNTPTAFQQMGYGAIFWYILGAILFFIPAGLMFAEY GATFKEAKGGLYSWLEQSIGEKWAFIATFMWLASWIIWMVMIAQKIWITLATIISGHDTT GSWSLFGMNSTMTIGLLAILWVVFVTWAASRGINTLAKVSSLGGLAVMAMNVILLLASVF ILIANHGHLAQPINHLSDFATSPSAQFQNPIAMISFVIYAIFAYGGLESMGGITDSLDKP EKTFPKGVMIGGIVIAVGYSFAIFLWGVSANWHTVILEQKANLGNITYVMMQNLGLELGK AMGLSSSAAVALGTAFSRFSGLGMLLAYVGSFFVLSYSPLKSFILGSPKELWPKKMTELN KNGMPANSMWLQAIVVSVFIAGISILASITHKEATFFYNVLTSMSNVSTTLPYIFLVGAF PFFKAKKDLDRPFEVYRSRPWMLTIVTVVLITVGVGIVFTAISPFISGDLFTGLWTVAGP LFFGLIAWAFLVRREKNKNI >gi|269838506|gb|ACXB01000005.1| GENE 14 17504 - 17869 165 121 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148994682|ref|ZP_01823786.1| 50S ribosomal protein L13 [Streptococcus pneumoniae SP9-BS68] # 1 115 1 115 278 68 28 1e-39 MGKIRINNMQFYTYNGVLPEEKKLGQKIEIDAELTYPIEERVKHDDLTETVSYSAVYKTV EEFVLTHNYDLIESVANHLLELILREYPSLQAVRLKIRKYSVPINGHFDNVEIEVSGQQN G >gi|269838506|gb|ACXB01000005.1| GENE 15 17850 - 18371 293 173 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148994682|ref|ZP_01823786.1| 50S ribosomal protein L13 [Streptococcus pneumoniae SP9-BS68] # 2 151 115 267 278 117 42 1e-39 MVNRMVNTAYLSIGSNIGDRKKNLELAIEKLNQVAQVSRLSHIYETEPVGGVKQDDFLNM AIQVKTSKSAYELLDDLHAIEKALKRKRIIHWGPRTIDLDILFFNNDHVSSPELTLPHPE IPNRRFVLIPMLEVSQDDPKLHQAIQALLDATSDKNMVRIYDSGSENIEPTQN >gi|269838506|gb|ACXB01000005.1| GENE 16 18331 - 18924 480 197 aa, chain + ## HITS:1 COG:BS_mtrA KEGG:ns NR:ns ## COG: BS_mtrA COG0302 # Protein_GI_number: 16079335 # Func_class: H Coenzyme transport and metabolism # Function: GTP cyclohydrolase I # Organism: Bacillus subtilis # 5 196 1 190 190 191 47.0 1e-48 MIQEVKTLNLPKIEKAVSDLLEGIGEDPQREGLVETPKRVAKAYAEIFAGLNHQATDFTD YKIFHVDEEPEMVLVQKIPFYSVCEHHLLPFFGNVNVAYVPKDGKVIGISKIPRLVDFVV KRPGMQEKVTTQISTELANILDPQGVAVTVSARHLCMEMRGINQSNLFTYTSKMTGVFKT DQALRANFFQQVGQQNA >gi|269838506|gb|ACXB01000005.1| GENE 17 18917 - 19582 693 221 aa, chain + ## HITS:1 COG:CAC2398 KEGG:ns NR:ns ## COG: CAC2398 COG0285 # Protein_GI_number: 15895664 # Func_class: H Coenzyme transport and metabolism # Function: Folylpolyglutamate synthase # Organism: Clostridium acetobutylicum # 6 209 3 207 431 132 38.0 5e-31 MPKTAYEELIRKLNHNMLVSHQDRIPLLKTVLAALGHPDLNYRIIHLAGTNGKGSTGAML AKSLENAGYRVGHFSSPAMIDQREQIQINGSMIEKEAFVALYEKIAQKLPQTITPASISI FEWFTLIMLEYFAENGVEWAIIEAGLGGENDATNIIEHPAAVVFTHIDYDHVQILGDTLE QIAQNKAGIIKKDATVFIAPKQTQQVRTILEKRRFKNGPLR >gi|269838506|gb|ACXB01000005.1| GENE 18 19609 - 20220 348 203 aa, chain + ## HITS:1 COG:CAC2398 KEGG:ns NR:ns ## COG: CAC2398 COG0285 # Protein_GI_number: 15895664 # Func_class: H Coenzyme transport and metabolism # Function: Folylpolyglutamate synthase # Organism: Clostridium acetobutylicum # 27 194 257 425 431 78 30.0 1e-14 MIKRSITGFKVSLHAKTTNIAATPFKLLGDYQIDNLTTVVTVYEWLFNQQVINDWQPLIE MMQHIQIPGRFQVLQRDPLVILDGAHNVDGTQALIKGLSNLNANHKLFFILGFLKDKDYS GMLHLYAKAADRIFAVQPDNPSRALRPTTIQTVLGNKVVGSYRDLYTALQQALTLADADT TIVVTGSFYLIKELEVPNVSNAN >gi|269838506|gb|ACXB01000005.1| GENE 19 20201 - 20797 210 198 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|74313511|ref|YP_311930.1| putative deoxyribonucleotide triphosphate pyrophosphatase [Shigella sonnei Ss046] # 9 195 5 193 197 85 33 5e-16 MFPMPTNFIIASNNRNKTRELIQIFEWFGQQAISYQSLLGRVDFPKEGTTSYSENALTKA NWIAQKLPGKWIVADDTGMMLKACPQSLGITTSRDLHMDQTTDSALNQQILKMVANQSRK VTMQSTLVAVNQPHVLKATGKFVGQISAEPRGNNGKSFDLILEVPGKNATLAELPNDEKI PLLHRTKAVQNLLDSYFI >gi|269838506|gb|ACXB01000005.1| GENE 20 20809 - 21939 1039 376 aa, chain + ## HITS:1 COG:L0176 KEGG:ns NR:ns ## COG: L0176 COG0294 # Protein_GI_number: 15673137 # Func_class: H Coenzyme transport and metabolism # Function: Dihydropteroate synthase and related enzymes # Organism: Lactococcus lactis # 77 367 60 353 357 190 37.0 3e-48 MEIYEQHLQFSSQLENKIWDDLLNRQRYLALKIIADDAAKLKLLAKLLDQMDLIHTAEGL RVDLLLPRVNLALFKEKLTEIFSDPSLDQQMDDLIQKYQVSWQAGRFDFNLTERPVIYGI LNVTPDSFYDGGWYQSETAILKRVSEMVDAGVDVIEVGGQTTRPGFVEIPPEEELKRVTQ VLDLIQKNFSQVAVAIDTYKYAVMERVIDYVDIINDVNAFTDDQRKLALMRNSNVGLLTM HSARNKDYDNLTAEMKTFFEENIATLVQNGININRIALDQGIGYAKKADGYQDYAMMKNI DQFNYLNRPMMIAISRKGFGAKLFGLPKEDRLPVTLVAEAYMYLHGGRILRVHDITETVQ LAKMLDVIQNGYWFGS >gi|269838506|gb|ACXB01000005.1| GENE 21 22454 - 22561 140 35 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MPGIITGALIFLGLSYLVFFGAQVYFKVKTGHWNR >gi|269838506|gb|ACXB01000005.1| GENE 22 22629 - 23198 597 189 aa, chain - ## HITS:1 COG:BH2748 KEGG:ns NR:ns ## COG: BH2748 COG2249 # Protein_GI_number: 15615311 # Func_class: R General function prediction only # Function: Putative NADPH-quinone reductase (modulator of drug activity B) # Organism: Bacillus halodurans # 4 187 5 186 198 100 36.0 1e-21 MKTIIYVHPWEGSFNHAILESVKKKFGPKHEDYQVIDLYKDQFNPTFSAEELSMFNAGDT PYLKVKEYQKMIKDSSELVFIFPIWWFYLPGILKGFFDKVMLKKFAYQVDEQGTWTGLLT NIKKVTVITTASMTKEILKASGDPIQGLFINGTLGSVGITPDKVSWLHFGNVETASPEEH TAFLEKILD >gi|269838506|gb|ACXB01000005.1| GENE 23 23535 - 24710 1113 391 aa, chain - ## HITS:1 COG:lin2916 KEGG:ns NR:ns ## COG: lin2916 COG0477 # Protein_GI_number: 16801975 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 2 379 3 383 396 249 38.0 7e-66 MKNVQKQVPSLMIIIALVGFPQISESIFTPVLPALSANLNVADRTGQLVMSTYFVAFAAG VLFWGKRSDVKGRKPAMLEGLLVYLVGNVGLFFAPNFIVMIFFRLIQSFGASVGSVVTQT IMRESFSGSKGAKVFANVGAALALSPAIGPLLGGYAQTYFGYRSVFGVLIAIAVSLIIYT GARLPETNPAIGVKGPEISLIAVVRRLFTDHNVLAYGLLISGINGILFSFYAEAPFIFID HFRFSPVQYGIIGIIIALSSIIGAIMVNKLVLIWSPTKIIKLGLIFSLFGGLFMFLTVLQ DSVIGFITGTFIVFLGLYTVLPLSLNLALVGYEKIIGVASGIFSFAYYLVISFLTYLISV FHTGWVGILPIYIFIVVGIMSLVYWLSFNKQ >gi|269838506|gb|ACXB01000005.1| GENE 24 25044 - 25292 75 82 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSFSTIQRKNFPILATLRKALNSTIPVLPISVSRHFWAAAYVCIGASPNKCIQLKQSTLL WFHHTLYLQIKLTQTKHLTNYL >gi|269838506|gb|ACXB01000005.1| GENE 25 25425 - 28082 1628 885 aa, chain + ## HITS:1 COG:L85514 KEGG:ns NR:ns ## COG: L85514 COG0474 # Protein_GI_number: 15673239 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Lactococcus lactis # 15 881 28 906 910 859 51.0 0 MKNVGKTNLKPNYEKFAKASIRELFKDFNITTTGLRQTQVQKMRNKFGPNKLTDNAKKSI IRTILGAYITPFTIVLICIGLVSFITDVVLAPPGERNYLGSGIIFGMVIISGTMTLIQSL RSTKAVEQLKTMIKSVTTVKRANGIQKIPVDHVVCGDIVQLSVGDMVPADIRLIKSKDLL VSEASLTGESYPVEKNHLQSKKTVKSETDYENLIFMGSYVTNGQAEGLVIATGNQTLFGG IAHSASITSTETNFDLGIRKTSYLFIKFTVIMTTIIFLINGLTKGDWLEALLFGLSVAVG LTPEMLPMIVTTNLVKGATKMAKGGTIIKNLKAIQNLGAIDVLCTDKTGTLTQNQFSLNH YLNWKGTTDEETLKWAYLNSRYQTGFNNPLDQAVIDAAKPEVKAQAANYQKVDEIPFDFE RRRMTVILKDQSQRHYELITKGAVEEMLEITNTVYSAGSLIPLTIEIKHEILRQVSQLNQ ADLRVVAVAHKRLATAPNTCSVEDETNLSFIGILSFLDFPKPTAKQALSALKSKGITIKV LTGDNAIVTKAICQQVGLRVTGIVSGENIDHLTDQELGPVVTQNNVFIKLTPQNKRRIIK ALRKNKHTVGFLGDGINDVPAIKEADVGISVNSAVDVVKETADVILTESDLVILKHGILI GREVFGNIMKYIKATASSNFGNMFSVLIASIFLPFLPMLPLQILLLNFIYDLSCMSIPWD TMDKDYLERHKKWQVNSISKFMVWFGPTSSIFDITTYLLMFFVICPAIVGGDFIHLTHPN QMYFIALFQSGWFIESLWSQTMVLHALRTDKIPFIQSSASAVLTIITSLSIVIGTVIPFT PIGKSLGLTAVPGSYWIWLVVTIFSYLALATIVKSTYIRRYKGFI >gi|269838506|gb|ACXB01000005.1| GENE 26 28233 - 29258 784 341 aa, chain + ## HITS:1 COG:SP1942 KEGG:ns NR:ns ## COG: SP1942 COG1316 # Protein_GI_number: 15901766 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Streptococcus pneumoniae TIGR4 # 4 297 3 310 338 169 35.0 7e-42 MRAKKVFGYVATIVLVLSVIGVLVFKFYEYKAFKTIKTSTSSVSNKINQQKPFSVLLLGV DTGSDGRIDRGLSDSMMVATLNPRTKQTLLYSVPRDSLAEIKTNHAKKDVQKINAAYEIG KAPVAKKTVSAFLGMPLDYSVTIDMGALKELVDFVGGVTVKTDIVVSFDGQTIPKGTHHL NGEKALAYTRMRYQDPRGDYGRQLRQQEVLMQIVHKLQSPQYMFRIPTLMNKLGSHISTD LTTQQIEKLISHYHQCTKHVVTKQLVGREAWINGSSYQVIDTASLQSASDQLRKNLGLTS KKLHNTETKLNELNTDFFSNPNSTTYNTVGLDTTYYTDNTY >gi|269838506|gb|ACXB01000005.1| GENE 27 29742 - 31253 1316 503 aa, chain - ## HITS:1 COG:SP2152 KEGG:ns NR:ns ## COG: SP2152 COG1288 # Protein_GI_number: 15901964 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 7 497 9 494 503 480 53.0 1e-135 MNKKFKFKMPSAYTVLVFIIIMIGILTWFIPSGHYVMDKAGRIIAGTYQQTGYRPQGIWD ICMAPIIGMIGNKYTDGAISISLFILVIGGFLGVVNKTEALDKGINQIVYKLQGREKALI IILMILFSLGGTTFGMGEETIAFYPLLIPVMMKVGFDSLTAVGIALIGTQIGCLASTVNP FATGVASQTINISMGDGLFSRILLLVLFDVISITFVYRYATKIKKDPTKSLVYGQREADQ KRFLQGFDENQAAETEKLTKAQKRVLFIFCLTFVLMIIALIPWSSINPNFTFWDQSVKWL TGIPFLGKLLGTDIVPFGSWYFNEITMLFIVMSVVIMFVTHMKESEFIEAFMNGMSELLS VAIIVAVARGIQVIMNDAAITDTVLHWGEMGLKSLPKTVFIILTYLFYIPMSFLIPSTSG LASATMGILGPMANFAHVAESTVVTAFQAASGWVNLVTPTSGIVVGALGIAHVNITVWWK WMAKLMVVLLIATCVYLAVLAII >gi|269838506|gb|ACXB01000005.1| GENE 28 31373 - 31648 204 91 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|270290254|ref|ZP_06196479.1| ## NR: gi|270290254|ref|ZP_06196479.1| predicted protein [Pediococcus acidilactici 7_4] # 1 91 1 91 91 156 100.0 4e-37 MYTYFEVIVGSHSQMYYANLKCHNGYLVISSTSKFNCSIKLSDIIYVTQSDFLGTKVYSF NYQGTQLKFFENGLGIGEYLRNQFKGVLVKL >gi|269838506|gb|ACXB01000005.1| GENE 29 31811 - 32743 889 310 aa, chain + ## HITS:1 COG:lin2880 KEGG:ns NR:ns ## COG: lin2880 COG1609 # Protein_GI_number: 16801940 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 1 310 1 315 318 211 37.0 2e-54 MTNIRDIAKKSGYSASTVSRFLNQTGYVSQSAKQAIQQVIDELDYVPNALARDLSKGKSN TIGIVIPQMQHPFFTELINGIMDTAFAADYHVSVLESRYDEQLEEKYLEKLHRKAFDALI FTSHKLPLARLAAYQKYGPVICCEDPGVTPIAAAYVLRKKTYVAAFNWIKKNRYSKIAIT LSRPYQLSATSKVTLQAYRDVFETFPDDQLIFEGVDSHPVAYQAASRIAQIHPDFIFGNI DDVIAGVYQYYIDNQLKLPKMMGQENQISGKLLKIPTIDHHLRQLGQAAGRLAISGDVRQ IAIESDLIIR >gi|269838506|gb|ACXB01000005.1| GENE 30 32933 - 33289 229 118 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0950 NR:ns ## KEGG: PEPE_0950 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 118 1 118 118 119 65.0 3e-26 MSTIEFLHSIVWILVGMICAYGLTIDQFQQTLIAQYSSRVLYIFVILTGLFNVVHTVAMS PLLVWIQFILEIITIGLFDFLLTYKRNKRGFKSNFVILLIFAFAITSLLAVVIQYFYG >gi|269838506|gb|ACXB01000005.1| GENE 31 33472 - 33873 266 133 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|270290257|ref|ZP_06196482.1| ## NR: gi|270290257|ref|ZP_06196482.1| predicted protein [Pediococcus acidilactici 7_4] # 1 133 1 133 133 201 100.0 2e-50 MFKKSVSVALFGAIGGALRLLLQSFFHHGATAFPLDLIIINLLGSFLLGILTGGLLTALE TSDFINVGLTTGLMGGFTTFSTFILSSDKLLVHLQWINGGSFMILSLLLGVLCAYAGQIG GKQILHHYRKEWE >gi|269838506|gb|ACXB01000005.1| GENE 32 33873 - 34223 207 116 aa, chain + ## HITS:1 COG:lin2187 KEGG:ns NR:ns ## COG: lin2187 COG0239 # Protein_GI_number: 16801252 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Integral membrane protein possibly involved in chromosome condensation # Organism: Listeria innocua # 1 116 3 116 118 57 35.0 6e-09 MSLLIVSLGSALGALFRFWATTFINRQALSESFPWSTFLINMLACFLIGYLTSVITSPLT QILLTSGVLGGFSTFSTFANEVVTLFKQPNTKKLAVLYALASLLGGLLLAALGSQL >gi|269838506|gb|ACXB01000005.1| GENE 33 34229 - 35092 706 287 aa, chain - ## HITS:1 COG:lin2658 KEGG:ns NR:ns ## COG: lin2658 COG1307 # Protein_GI_number: 16801719 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 2 282 4 282 283 273 49.0 2e-73 MKTAIVTDSTCYLTDKEIEENNITVVPIPVIIDGKSYKEGVDITTEEFYERLRTSQSFPS TSQPPLGEMIELYQDLAKQGYENIISIHLASTISGLVASLKSLEGTIDGVNLVVYDSQLT IRLMGVLALEAARMAKEDADINDIIARLDFLRSTFDEYFVVDDLQNLVRGGRLSNASAFV GSLLKIKPILTFNAKHEIVAFEKVRSRKKAMARVEKLFAEAYKSVDYPLRAVVIHANDEK SAIKWRESLKEKYPSLPIDISYFGPVIGTHLGEKAIALAWLIDYTKK >gi|269838506|gb|ACXB01000005.1| GENE 34 35178 - 35588 430 136 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0946 NR:ns ## KEGG: PEPE_0946 # Name: not_defined # Def: transcriptional regulator # Organism: P.pentosaceus # Pathway: not_defined # 1 136 1 136 136 120 48.0 1e-26 MQASLTALEQIAHIRNNYLKKYCHEMTGTVADWKMVNYVNDARLTTLNLVELSGLDKSTV SRQLKHAIQHNFLQKQSNEIDQRKSTFTITDKGDTLRTYVNQKMAEFDRHLFDNWSEEES AMFQILINRVLKNALK >gi|269838506|gb|ACXB01000005.1| GENE 35 35722 - 37437 1012 571 aa, chain + ## HITS:1 COG:lin1943 KEGG:ns NR:ns ## COG: lin1943 COG1293 # Protein_GI_number: 16801009 # Func_class: K Transcription # Function: Predicted RNA-binding protein homologous to eukaryotic snRNP # Organism: Listeria innocua # 1 567 1 568 570 465 45.0 1e-130 MAFDGLFTHAMVNELRSLESGRVAKIYQPYQSELVLTIRANRKNVPLLISSHPNYARVQV TNQALSNPATPSNFVMSLRKHLEGAILKSVKQLDNDRIINFYFSHRNDIGDEEDVILSVE IMGRRSNVILYLGSSQKIIDTIKHISADQNRYRMLVPGAQYITPPAQELLNPFTDSNQQT WDNLLRDYPNYEVLAKQIQATFQGFGKENALELAYRLINGQTPATVVHEFLDCFNTGPKG FIYESQAKKLSYSAIQPTLTADQPNLQAFNSLSEMLDQYYFEKVQRDRVQQRGHQLIRVV RNELKKNRKKLKKLQNTMAQTQYADSYRIKGEVLTTYLSQIKRGMTFVELPNFYDQNQPI TIKLSNQLSPSQNAQKYFKKYQKEKNAVKYVSEQIAQTESEIAFLDNIETQIDLAKPEDL AEIKIELENEGYLRKQRNPKKRVKNVISKPEQFISSDQTPILVGKNDAQNDRLTLKTAKK DYYWLHAKDIPGSHVIIESSQPSEQTLIEAATIAAYYSKGKNSANVPVDYVPVKNIRKPN GAKPGFVIYEGQRTLKVTPQITVVQKLMQKK >gi|269838506|gb|ACXB01000005.1| GENE 36 37560 - 40019 1923 819 aa, chain - ## HITS:1 COG:SPy0835 KEGG:ns NR:ns ## COG: SPy0835 COG0458 # Protein_GI_number: 15674870 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase large subunit (split gene in MJ) # Organism: Streptococcus pyogenes M1 GAS # 7 665 8 666 1058 447 34.0 1e-125 MARFHARNVLIIGNGPTQIGRDTESEAAAAQIVEIFAQKGRNLFYVTNDANSVIPQLDVP INFIVTELTVNNLIQILREHEIDVILPVVGNTGGLQLAEQLNESGILKELNIRTMGVTTT TIHNINNPELMNKVLRHIKEPIIPTTVVENEKNAVMFAKRVGFPVLIKPIASLTKTNRIK CDNEHQLQEVLETAFKVSTTNQVAVEKSVVGYKEIEMTVIRDAEGSKLLINGAEDLNPIG VHSGDSIIFSPTQTLTDTEFQELRASALKITEVLKIKGVCHVQYALDPTNGKYFVTRINP FFDRTTAFAARATGYPVATVVAEILLGKNLREIELTGVQKHDALALIEPTLDHIAVRFPT WSFASFKNADQELNTKMKSTGAVMSFGRSAEEALQKAIRSVDSTTAAEQAALDESQLSEA QLINVLIHERAGEVYYLLEALRRGYTVDELAEMTHIDAFYFYKLQHLIKVEKRLKAHHFD AEALREAKYFGFGDTQIAHLWRTTPSAVRKFRTETAKVFPTYKGVEPTAGEFPYLTNTYY STFEDEDEAVQISGKKVLVLGTANSQVGTNSAAEYTTFQTLRRCKALGYKVILINNNPNA ITFNQQLADKVYLEPLTVENCLNIIQREKPDKVLAQGKWQIVTQLTEQNIEIAQIPLSRT TRSENIGADYMAVISKINGRTHLFGIIGVDQNRLFSFAENSVVDQQLDTSAIDEEANQIE HDGIFSVMLKKEASALKVISCVPVAIQDLPFLSLAFNQDFAGMITEITLTGTFQIEEHPV RMARYHYEHVYPYKQFGLTQPQRAPYSLAIGAKLEQADS >gi|269838506|gb|ACXB01000005.1| GENE 37 40021 - 41106 1104 361 aa, chain - ## HITS:1 COG:SPy0833 KEGG:ns NR:ns ## COG: SPy0833 COG0505 # Protein_GI_number: 15674869 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase small subunit # Organism: Streptococcus pyogenes M1 GAS # 1 357 1 354 360 369 48.0 1e-102 MADRYLILEDGSVFKGKAFGSRATTFGEVVFNTVMTGYQQVITNQIYHNQIIVFSQPTIG AVGIDRSSYESVDPTCKGVIVRDVADVSINRRRRLSLDEYLKRQNIPGISGIDTRALIKK LRTNGKMKGSIIDPVKDLEHAFDQLRAIVLTNQQVNQVSTPKPFPNPGNGKNVVVIDLGL KYGILRQLNQRDCNVTVLTYSATADTIFSLDPDGVIISTGPGNPNDLPAEVIEMIQTVQR NNIPLFAIGLGHEAFAIANGCQISELTSEHHGANHPILSVITDEIMYASHGQGYTVDPAT VNRKDLIVTHYDMIDHSIQGLRHRDFPAFSVQFFPDSSPGPREATEMFDEFMEMMTTRGG R >gi|269838506|gb|ACXB01000005.1| GENE 38 41135 - 41668 654 177 aa, chain - ## HITS:1 COG:lin1954 KEGG:ns NR:ns ## COG: lin1954 COG2065 # Protein_GI_number: 16801020 # Func_class: F Nucleotide transport and metabolism # Function: Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase # Organism: Listeria innocua # 5 177 7 180 183 185 56.0 4e-47 MEKEIMDAMAMKRALTRITYEIIERNKGVEDIVLIGIKTRGVYIAKRIAERLKQLENIDI PVGELDIAEYRDDQRDGAGKRPTKTNANLSKIDLKDKKVILIDDVLYTGRTIRAAMDAIM DINRPAQISLAVLVDRGHRELPIRADFVGKNIPTAQNEKINVSVREIDDEDVVLLTN >gi|269838506|gb|ACXB01000005.1| GENE 39 41749 - 42657 805 302 aa, chain - ## HITS:1 COG:SP0929 KEGG:ns NR:ns ## COG: SP0929 COG0564 # Protein_GI_number: 15900809 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthases, 23S RNA-specific # Organism: Streptococcus pneumoniae TIGR4 # 10 298 6 294 295 350 61.0 3e-96 MKEINFTIEESAKGRLDKVIAENVADLTRSQVQSLIKKGQILVNDVPTTNRYQVKPNDQV IIKLPDPVAIDVQPEKMDLDIVYEDDDVIVVNKPQGMVVHPAPGHDHGTLVNGLLAHTPL ATINGELRPGIVHRIDKDTSGLLMVAKNDQALVSLSKQLKDKTNQRKYWAIVHGNIKEDT GTINAPIGRSKKDRKKMAINEEGRPAVTHFKVLERFGEYTLIECQLETGRTHQIRVHLKY IGHPVAGDPLYGPRKTLKGNGQFLHAKLLGFKHPRTGEEMVFEVDPPAIFQATLKKLRAI SD >gi|269838506|gb|ACXB01000005.1| GENE 40 42667 - 43119 427 150 aa, chain - ## HITS:1 COG:SPy0826 KEGG:ns NR:ns ## COG: SPy0826 COG0597 # Protein_GI_number: 15674864 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Lipoprotein signal peptidase # Organism: Streptococcus pyogenes M1 GAS # 1 145 1 147 152 116 47.0 2e-26 MKYTAYIFGLILLIADQAFKFFISHTIPLGAVLPLIPGALSLTNLRNDGAAWSILAGSQL LFTLITIVALFVLGYLLITQHNHVWYRWGLSLMISGTLGNFIDRIRLKYVVDMFQVDWFN FPIFNIADSCLTIGVLILMIAIMRDNRIEG >gi|269838506|gb|ACXB01000005.1| GENE 41 43132 - 44799 1854 555 aa, chain - ## HITS:1 COG:lin1990 KEGG:ns NR:ns ## COG: lin1990 COG2759 # Protein_GI_number: 16801056 # Func_class: F Nucleotide transport and metabolism # Function: Formyltetrahydrofolate synthetase # Organism: Listeria innocua # 2 555 7 560 560 650 60.0 0 MNDIEISQNAEMLPIQEIAQQAGFNEKTVEPYGRYKAKIDIFAEDEEAAQLGKLVLVTSI NPTPAGEGKSTVTVGLGDALNEMTGSAMVALREPSQGPVMGMKGGATGGGYSQVVPMDEI NLHFTGDMHALTAANNTLAALIDNHIQQGNQLNIDPRTIVWRRCLDINDRALRNIVIGMG GRFSGVPREDHFDITVASELMAILCLAESLTDLKKRINRILIAKNYAGEPIFVRDLKVGG AITALLKDALKPNLVQTLGHTPALIHGGPFANIAHGCNSVLATKTALKHADYTITEAGFG ADLGAEKFLDIKTPVLGKEPDAIVIVATVRALKYNGGAKLADLQNEDLVALEKGFVNLQR HIKNMQRYQVPVVVSINRFTSDTDQEIAELKQLVEQTGVQAVVTDAWAKGGAGCKELAHA VITATDTNSDVTMQPLYDVAAPIQDKVKAIVQKMYGGAEVQYSATALKKIKECEQNGWDK LPICMAKTQYSFTDDPKQLGAPTGFTMHVNDINIRLGAGFLVVLTGKVLTMPGLPKQPAA LNIDVNDKGEITGLF >gi|269838506|gb|ACXB01000005.1| GENE 42 44806 - 45189 222 127 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0938 NR:ns ## KEGG: PEPE_0938 # Name: not_defined # Def: pore-forming protein # Organism: P.pentosaceus # Pathway: not_defined # 1 127 1 127 128 167 71.0 2e-40 MKKVESFYYQPDFLNNIISWCWTFLILIVGVIFWLEVTTFNWITAVFFALFVMVISIQTV SRRVEVIGSEVIINRVFKSNFTVLSIANIEDITRGKISIGFQYDHKRYKLLMRRRSVNRL YEILTKE >gi|269838506|gb|ACXB01000005.1| GENE 43 45189 - 46295 892 368 aa, chain - ## HITS:1 COG:SP1608 KEGG:ns NR:ns ## COG: SP1608 COG0665 # Protein_GI_number: 15901448 # Func_class: E Amino acid transport and metabolism # Function: Glycine/D-amino acid oxidases (deaminating) # Organism: Streptococcus pneumoniae TIGR4 # 2 364 3 362 367 269 43.0 8e-72 MKIAVIGNGIVGATFVSEMLERFPENQIVQFDGIKGTATTASAGIIAPWLSKRRNQKWYH LARLGAEYLNQLAQKYEMPADVYYQSGVIYTRDQADKLSELYQLAQTRIKQAPQMGEFEI VDHQTIQKEFNFIQTKNDGLYVKGGARIDGRQFINFLQKRNQGKFEFRHDVAQLKREGSH VLVNGEHFDLVILACGAWLKQTLAPLGVEALIRPQKGQLIEVTLPEHARMADKAPVLMPE GERDFIPTNQGTLLIGATHENDQGFDLQVSSQIVEDLLASGQRVIPGLTQAMVKSVRVGT RAYTADFAPFFGYLPEFPEIMVASGLGSSGLTTGPIIGKLLVDLVADPQRDVTSLTKPVG DYVKLGGI >gi|269838506|gb|ACXB01000005.1| GENE 44 46305 - 46748 340 147 aa, chain - ## HITS:1 COG:SPy1644 KEGG:ns NR:ns ## COG: SPy1644 COG0116 # Protein_GI_number: 15675517 # Func_class: L Replication, recombination and repair # Function: Predicted N6-adenine-specific DNA methylase # Organism: Streptococcus pyogenes M1 GAS # 3 145 236 378 384 174 55.0 3e-44 MADKELVERIRAEADEKADYDVELDITGYDIDGKMVEIANKNAEEAGLAGIINFKQQAVK DFKTEQKNGVMIGNPPYGQRLSDQKAAREIYRQLGTVTRPLVTWSKYFITSDLDFEKYYG QSATKKRKLYNGALRTDYFQFWGKRER Prediction of potential genes in microbial genomes Time: Fri May 27 06:31:47 2011 Seq name: gi|269838505|gb|ACXB01000006.1| Pediococcus acidilactici 7_4 cont1.6, whole genome shotgun sequence Length of sequence - 6447 bp Number of predicted genes - 7, with homology - 6 Number of transcription units - 3, operones - 2 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 3/0.000 - CDS 3 - 684 503 ## COG0116 Predicted N6-adenine-specific DNA methylase - Prom 709 - 768 6.9 2 1 Op 2 6/0.000 - CDS 1168 - 1509 357 ## COG3599 Cell division initiation protein 3 1 Op 3 . - CDS 1585 - 2001 427 ## COG4474 Uncharacterized protein conserved in bacteria 4 1 Op 4 . - CDS 2031 - 2135 79 ## - Prom 2256 - 2315 5.4 + Prom 2192 - 2251 6.0 5 2 Op 1 7/0.000 + CDS 2292 - 2891 411 ## COG3331 Penicillin-binding protein-related factor A, putative recombinase 6 2 Op 2 . + CDS 2925 - 5246 1985 ## COG0744 Membrane carboxypeptidase (penicillin-binding protein) + Term 5290 - 5343 15.5 - Term 5476 - 5522 3.3 7 3 Tu 1 . - CDS 5655 - 6329 544 ## lp_1194 transposase, fragment (putative) - Prom 6352 - 6411 5.7 Predicted protein(s) >gi|269838505|gb|ACXB01000006.1| GENE 1 3 - 684 503 227 aa, chain - ## HITS:1 COG:lin2000 KEGG:ns NR:ns ## COG: lin2000 COG0116 # Protein_GI_number: 16801066 # Func_class: L Replication, recombination and repair # Function: Predicted N6-adenine-specific DNA methylase # Organism: Listeria innocua # 1 227 1 227 382 300 63.0 1e-81 MKNYKLLATMASGLESLTKNELKDLGYDVQTENGRVRFEGTFEDVIRTNLWLRTADRIKI IVGEFKAVTFDELFEQVKALPWDELIPINGAFPVNGKSKKSQLHSVPDVQAITKKAIVEK LREVYHWRNQLPETGAKYGLEVSIDKDHVLITLDTTGDSLFKRGYRLYKGSAPLKETMAA ALVMLTNWHADKPLVDPFCGSGTIPIEAALIGQNIAPGFNRSFACES >gi|269838505|gb|ACXB01000006.1| GENE 2 1168 - 1509 357 113 aa, chain - ## HITS:1 COG:lin2002 KEGG:ns NR:ns ## COG: lin2002 COG3599 # Protein_GI_number: 16801068 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division initiation protein # Organism: Listeria innocua # 5 106 9 112 113 93 50.0 9e-20 MDNINFTPKDILQKEFKPKMRGYDPADVDTFLDSVIKDYENFGKEIERLKDENERLSDKV DELGKQVSAGATVEESAPVSGATNVDVLKRLSNLERRVFGAQLEDNGNDSHRI >gi|269838505|gb|ACXB01000006.1| GENE 3 1585 - 2001 427 138 aa, chain - ## HITS:1 COG:BS_ypsA KEGG:ns NR:ns ## COG: BS_ypsA COG4474 # Protein_GI_number: 16079277 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 6 126 51 171 180 80 35.0 8e-16 MIAGPQLGTEQWGLMLANELKKDYPELQTAMMAPFADFGQQWKSEKQEQLAALKAKVDFY GQVSDLPYKNPQQLKNYQSFMLEHTDEALLLYDSEREGKTKYDLTAIQRYQNQNAYDLTT IDFYDLEDEANAYAENQE >gi|269838505|gb|ACXB01000006.1| GENE 4 2031 - 2135 79 34 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSRLWLTGYRSYELGIFSDSDPKLKVIKFALKIG >gi|269838505|gb|ACXB01000006.1| GENE 5 2292 - 2891 411 199 aa, chain + ## HITS:1 COG:lin2005 KEGG:ns NR:ns ## COG: lin2005 COG3331 # Protein_GI_number: 16801071 # Func_class: R General function prediction only # Function: Penicillin-binding protein-related factor A, putative recombinase # Organism: Listeria innocua # 1 198 1 199 201 211 50.0 8e-55 MKFNYPTGSTLNNHPSVDRPQKQSVPIYGKRGMSLEEELNESNRYYLSRGIAVVHKKPTP IQIVKVDYPKRSAARIKEAYFSKASTTDYNGVYKGKYIDFDAKETTNTTSFPLSNFHEHQ ITHMEQCQKVGGVCFTIVKFVKLDKIFLLPATDLFKFWKNIKNGGRKSIPLSVFEQNGYE INYQINPLIPYLEAVDQII >gi|269838505|gb|ACXB01000006.1| GENE 6 2925 - 5246 1985 773 aa, chain + ## HITS:1 COG:lin2006 KEGG:ns NR:ns ## COG: lin2006 COG0744 # Protein_GI_number: 16801072 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase (penicillin-binding protein) # Organism: Listeria innocua # 9 663 3 652 826 462 41.0 1e-129 MNSRNDNHEQPLRRTQHSQMQRSHTNKRGPSSWIKKLLLAAVGFLVALIVFGGGLFMYYA QSAPKITEAQLSSDNATVIYDKDGKVLTRLGSQNREYVKKEEIPKTLKHAIVSIEDRRFY KNNGIDPVRIVGAALANFTGSSLGLQGASTLTQQLVKLSVFSTDASDRTLKVKAQEAWLA LQVDKKYSKDQILEFYINKVYMGNGVYGMETAAKYYFGKSLDKLDLAQLALLAGMPQSPT NYDPISNPKYAKSRRDTVLEAMVKNKEISRQQADQAENESIQSGLTDTHETTSESTKKNK IIDPYVKEVLTDLKDKGFDTTKGGLKVYTNMDYAAQKKLYELANDDQTVNFNDDEIQVGA TMVDNKTGKIVAMLGGRKTGDVTYGLNRAVQTDRSSGSTAKPLMDYGPAFEYLKWPTYRK VKDIPFTYPGTNTKLYDFDHQFKGTMTVRDALIQSRNVPAIRTLQDVGISKASDFMEGLG ITSKDGYTLSNGIGLYISTLQEAAAYAAFANGGIYHKPTYIHKVVTNDGKIYKYKSKGSR AMSKATAFLMTSILKGVTTDSNGSGRAANLPGINMASKTGTVAYSKKATEAYDIPSNASS DSWMTGYTKDYSLSVWTGFDHPNSTTGYLTQEQTNLAQYLWKYMIYYMAQYSSNADWSMP SSVGKKGENEYYQIGADYDDTGKSDDYAKNNKRSYSSIFSSSSSSNSSSKSSSSDEDKDD DHDEQSQKDDDSSSSESSSSSSSVSSSEPSSSETPSSSATSPSTESASVSSSN >gi|269838505|gb|ACXB01000006.1| GENE 7 5655 - 6329 544 224 aa, chain - ## HITS:1 COG:no KEGG:lp_1194 NR:ns ## KEGG: lp_1194 # Name: not_defined # Def: transposase, fragment (putative) # Organism: L.plantarum # Pathway: not_defined # 110 224 1 115 115 154 73.0 2e-36 MSRSKYTALEKLNFINEFNQSNINQRAFAKYHGLRRSTFKDWLIRYETFGIKGLMEVKKN NKYSTDFKYTAVMAYLNGEGTLSELMSKFRLRSCKQLIDWINKYNEDKTLTATPFRKKVP VMSRKTTFEERIEIVEWITKGKHSYAEAAEHFKVSYQQVRSWVIKAQTGGYESLADNRGH RKPTTELTETDKLKRENRQLKAQLAEKKILEEFVKKYMELQRRG Prediction of potential genes in microbial genomes Time: Fri May 27 06:32:04 2011 Seq name: gi|269838504|gb|ACXB01000007.1| Pediococcus acidilactici 7_4 cont1.7, whole genome shotgun sequence Length of sequence - 31456 bp Number of predicted genes - 31, with homology - 28 Number of transcription units - 19, operones - 7 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 18 - 734 658 ## COG3935 Putative primosome component and related proteins 2 1 Op 2 . - CDS 749 - 1240 477 ## PEPE_0929 hypothetical protein 3 1 Op 3 . - CDS 1271 - 4054 2042 ## COG1199 Rad3-related DNA helicases - Prom 4081 - 4140 7.0 + Prom 4092 - 4151 4.2 4 2 Op 1 5/0.111 + CDS 4173 - 5093 915 ## COG1577 Mevalonate kinase 5 2 Op 2 5/0.111 + CDS 5109 - 6104 680 ## COG3407 Mevalonate pyrophosphate decarboxylase 6 2 Op 3 3/0.111 + CDS 6119 - 7201 948 ## COG1577 Mevalonate kinase 7 2 Op 4 . + CDS 7210 - 8193 718 ## COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases - Term 8188 - 8257 7.4 8 3 Tu 1 . - CDS 8266 - 9648 1065 ## COG0144 tRNA and rRNA cytosine-C5-methylases - Prom 9779 - 9838 7.0 + Prom 9634 - 9693 8.1 9 4 Tu 1 . + CDS 9813 - 10625 808 ## COG0561 Predicted hydrolases of the HAD superfamily - Term 10621 - 10688 9.2 10 5 Tu 1 . - CDS 10706 - 10894 365 ## COG1942 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog - Prom 10919 - 10978 8.9 + Prom 10939 - 10998 5.7 11 6 Tu 1 . + CDS 11079 - 12509 1032 ## COG4690 Dipeptidase + Term 12515 - 12558 10.1 - Term 12502 - 12544 6.1 12 7 Tu 1 . - CDS 12568 - 14406 1689 ## COG0481 Membrane GTPase LepA - Prom 14530 - 14589 6.9 + Prom 14474 - 14533 8.5 13 8 Tu 1 . + CDS 14585 - 15274 367 ## + Term 15287 - 15331 5.2 - Term 15395 - 15453 3.1 14 9 Op 1 . - CDS 15481 - 16653 943 ## COG3250 Beta-galactosidase/beta-glucuronidase 15 9 Op 2 . - CDS 16733 - 18556 1221 ## COG3250 Beta-galactosidase/beta-glucuronidase 16 9 Op 3 . - CDS 18575 - 20029 1363 ## COG0531 Amino acid transporters - Prom 20070 - 20129 7.5 + Prom 20021 - 20080 7.8 17 10 Op 1 . + CDS 20167 - 21009 642 ## COG2207 AraC-type DNA-binding domain-containing proteins + Term 21026 - 21058 -0.9 + Prom 21031 - 21090 7.7 18 10 Op 2 . + CDS 21114 - 21677 537 ## COG1611 Predicted Rossmann fold nucleotide-binding protein + Term 21702 - 21759 7.1 - Term 21688 - 21745 10.1 19 11 Op 1 . - CDS 21779 - 22519 227 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 20 11 Op 2 . - CDS 22519 - 22740 352 ## PEPE_0902 hypothetical protein 21 11 Op 3 . - CDS 22765 - 23247 500 ## COG4708 Predicted membrane protein - Prom 23484 - 23543 7.4 22 12 Op 1 2/0.111 - CDS 23561 - 24517 651 ## COG1893 Ketopantoate reductase 23 12 Op 2 . - CDS 24514 - 25728 774 ## COG0477 Permeases of the major facilitator superfamily - Prom 25769 - 25828 8.1 + Prom 25733 - 25792 5.3 24 13 Tu 1 . + CDS 25859 - 26749 698 ## COG0583 Transcriptional regulator - Term 26579 - 26605 0.1 25 14 Tu 1 . - CDS 26746 - 27417 314 ## SLGD_00208 membrane spanning protein - Prom 27437 - 27496 2.6 26 15 Op 1 . - CDS 27529 - 28284 352 ## SH2303 hypothetical protein 27 15 Op 2 . - CDS 28284 - 29162 685 ## COG1131 ABC-type multidrug transport system, ATPase component - Prom 29202 - 29261 7.4 - Term 29265 - 29319 17.1 28 16 Tu 1 . - CDS 29479 - 29628 63 ## - Prom 29662 - 29721 3.6 + Prom 29608 - 29667 7.3 29 17 Tu 1 . + CDS 29835 - 30065 354 ## COG2155 Uncharacterized conserved protein + Term 30172 - 30234 9.2 30 18 Tu 1 . + CDS 30452 - 30925 455 ## COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) - Term 30928 - 30989 1.3 31 19 Tu 1 . - CDS 31087 - 31455 333 ## Predicted protein(s) >gi|269838504|gb|ACXB01000007.1| GENE 1 18 - 734 658 238 aa, chain - ## HITS:1 COG:BH1697 KEGG:ns NR:ns ## COG: BH1697 COG3935 # Protein_GI_number: 15614260 # Func_class: L Replication, recombination and repair # Function: Putative primosome component and related proteins # Organism: Bacillus halodurans # 4 219 5 223 233 122 31.0 6e-28 MQDVLLKLLQDGNTSIPNFLLDNYAKLGMTNNEFLLYLQIKKEQSRGNGFPPMDKLATSL GIDSQTLFATIQSLQDKKMLEIKQRRDGQGQLTDFYDFSLFYQKLIALLDGKATQEVATQ TQEKTNSIYDQIQVEFGRALSPIEIETIAQWVDTDHFSPELIRLALKEAVLNQAYNLKYM DRILLNWQQRNLTTAAQVESSLKQRPHGEAENSSKATKNKASNVYIPLIKLTDNQDNK >gi|269838504|gb|ACXB01000007.1| GENE 2 749 - 1240 477 163 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0929 NR:ns ## KEGG: PEPE_0929 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 163 1 163 163 194 64.0 1e-48 MKKGRLKHPFLLITFIVLATIIGSAVIIFNEINQPIRGDTRVAKTIALDNTDLTKVDRVT RFVYNQTEYTVSGAKKDGTNIFVVIADHGKKITVYPQSAGVSEQAAIKTVEQDSALKEIT SSRFGIVKKRPVWMISYINQKDHLVIKLIDFKTGQEIKRVSTY >gi|269838504|gb|ACXB01000007.1| GENE 3 1271 - 4054 2042 927 aa, chain - ## HITS:1 COG:BH1691_2 KEGG:ns NR:ns ## COG: BH1691_2 COG1199 # Protein_GI_number: 15614254 # Func_class: K Transcription; L Replication, recombination and repair # Function: Rad3-related DNA helicases # Organism: Bacillus halodurans # 255 918 35 708 716 264 29.0 7e-70 MKKTRYAVVDLETTGTGSVEESRIIQIGCAFIEGDQITETYQTKINPQMTIPKRISRLTG ITDQQVRQAPKFADVADKIYQKLAGTVFVAHNVNFDFPFLNRELVRSGYPELDLKAIDTV TLSQVLFSRTRGYRLRDLTNYLHIEHDDPHSADSDAVATAHLFLKIKAALSELPIVTLEQ LVKLGDQLPLQTATILEAALQKSKRHPNKLPDDLLVVDGLAIKRPAPLNTGEEVNVKKEA YPQTKRSKIKLYNKTLKWRKSQATLMNYVYQQFSQENEERNIVVEAPTGMGKTLGYLLPL SYVGRQRARKVVISVPTTVLQNQVLKVGKEQLNPLLRYPRQFAVLKGSSNYLNLDLFAKK IATPTGLSKDSRLLAMKILVWLTTTETGDFDEINYHVGFGNSIDQFRHAGATVLSAQSPF YSYDFYRRAKTKLKFADFIITNHAYLAHHSAKFNVQERAPYLVIDEAQHFAQELANLNQQ YLDLNELMMEAHRLVSRLLMNHHDNLMRSVMKHPLAGFHIRRFVNSLEKINRLISQIQGN LYEHFVQRQKVELVENQPAEIAIDEATIQQLNQNEFNALTQELANTFIEFDTLDRYFKQH DLGSVTNEAWRQIGAFQGNLTKFYDAIRDLKNDSAQSYYWITLGPNHDAGSIRIGRGVVN PGEFYQKEIVPAFAQILLIGGTLFVGNHRDYFLDKYALTKENAIIRSFNTGVNFAKQLDF EVLDSSFTLDPDTSPKAYERFLANAIVELTEDVNRQTLVLFNSLDTIEKVYTRMMQEHPE RSRKILAQGVHGSRAKIIREFNDEDNAILLGAASFWEGIDFPGDRLEYLIVTRLPFRSPG DKLVQLAAKRARNPFRQFTLPDALLTFKQGLGRVIRNSDDTGAVVMLDNRIMKRRYGKQF IHQLPNGVEAHYGKIDEIKTRVADFFK >gi|269838504|gb|ACXB01000007.1| GENE 4 4173 - 5093 915 306 aa, chain + ## HITS:1 COG:L7866 KEGG:ns NR:ns ## COG: L7866 COG1577 # Protein_GI_number: 15672386 # Func_class: I Lipid transport and metabolism # Function: Mevalonate kinase # Organism: Lactococcus lactis # 8 303 11 307 310 231 42.0 2e-60 MKEVIKTSNAKIILMGEHSVVYNQPAIALPIRNVKTTVKIQSIPGDIQIRSRYFNGFLND IHSNLLGIKQLINQTLTTLGKPHYGLLLDIDSQIPAERGMGSSASTAVAIVRAMYAFFDR PLTKNKLLKAVNISEKIIHGNPSGLDSATASADRPIWFKRDGTIKALPINFNGYLVISDS GIKGKTGEAVDIVKNKLRIDNDSRLLIEKLGELTSQTATALKDNDSLALGDIMNNAQACL RQLGVSHPAVEKLIQAANQSGALGSKLTGGGLGGCVISLVSDAQAAENVSAQLRKAGATA TWIEKL >gi|269838504|gb|ACXB01000007.1| GENE 5 5109 - 6104 680 331 aa, chain + ## HITS:1 COG:lin0011 KEGG:ns NR:ns ## COG: lin0011 COG3407 # Protein_GI_number: 16799090 # Func_class: I Lipid transport and metabolism # Function: Mevalonate pyrophosphate decarboxylase # Organism: Listeria innocua # 8 303 18 313 339 239 49.0 4e-63 MKTTDKKRGFARAHTNIALIKYWGKVDSELIIPANDSVSLTLDEFYTDTVVNFSEDYKVN EFWLNGNLMPYKHMARINRVIDAVKEEYDYPGFAKIRSFNHVPTSAGLASSASGMAALAG AAADALGDEHDLTNISRIARLGSGSASRSVFGGIVHWHRGSDHESSFVEQVVNEKDIDLN MVTVVVNSHQKSIKSTNGMQRTVETSPFYPTWVSESNRMVPEMLAAVKKNDFTKIGELAE HSAMMMHATTLAAIPAFTYFQPDTLKVIRLVTQLRKEHGIECYYTIDAGPNVKVLCQNKD ILAIRNFLKNYFEERQLVIARPGSGIKFSKN >gi|269838504|gb|ACXB01000007.1| GENE 6 6119 - 7201 948 360 aa, chain + ## HITS:1 COG:SA0549 KEGG:ns NR:ns ## COG: SA0549 COG1577 # Protein_GI_number: 15926270 # Func_class: I Lipid transport and metabolism # Function: Mevalonate kinase # Organism: Staphylococcus aureus N315 # 1 354 1 355 358 297 42.0 3e-80 MITQKAPGKLYVAGEYAIVEPGNSAVLVAVNQFITASIEPSELTFGNIISKQYHDNVVSW RRKGGQLVVDNRDNPYHYILAAISITEELAVLMHRQLRTYNLYINSDLDSSDGKKYGLGS SAAVTVATIKALAKFYQIPLTKKLLFKLASIAHLDVQGNGSLGDIAASVYGGWIAYRSFN REWLNSMRRTKDLGTILRTPWPELKIELLTPPADLKLLIGWTGSPASTSDLVDQVATTSY QETDSYHEFLANSAECLRKMIEGFKNGDSQLIKQQITANRLLLQQLSLLSGVSIETPALT SLCDIAEQFGGAAKSSGAGGGDCGIVITEENDNTEKIINEWQKEDIQPLDLDVHDIDELS >gi|269838504|gb|ACXB01000007.1| GENE 7 7210 - 8193 718 327 aa, chain + ## HITS:1 COG:lin1420 KEGG:ns NR:ns ## COG: lin1420 COG1304 # Protein_GI_number: 16800488 # Func_class: C Energy production and conversion # Function: L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases # Organism: Listeria innocua # 4 326 8 334 358 268 44.0 1e-71 MKNIQSHRKDEHVSLAEKFYQPVASAGFTEIKLRPNALPEMGIDDVSLQTKLAGLPIEVP FFIQAMTGGSPTTAKLNRRLATIARETGLAMAVGSQSVALKYPELADTFQVVRNENPHGL ILANLGADASVAAAKKAVAMLDADVLQLHINVAQELVMPEGDRSFNYLEQIKAIQAAVSA PVVIKAVGAGMTRADALRLQSVGVRYIDVGGKGGTNFVQIENARRSEKDFAFLTDLGLTT VESLKEVNGLGLSVTATGGIRTPADVIKSIALGADNVGVAGYFLHQLLHHDDQEIIDLIE RWKYQLRCLMVLLGVTKLADLSERQLR >gi|269838504|gb|ACXB01000007.1| GENE 8 8266 - 9648 1065 460 aa, chain - ## HITS:1 COG:SP1402_1 KEGG:ns NR:ns ## COG: SP1402_1 COG0144 # Protein_GI_number: 15901256 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA and rRNA cytosine-C5-methylases # Organism: Streptococcus pneumoniae TIGR4 # 1 292 1 279 280 339 56.0 8e-93 MRLPDGFKEKYQKLLGEEAQPFLASFDQAVEKGFRVNPLKGAAKLHDHSIDQPISYSDWG YYGKVNGKTIDHQNGLVYSQEPSAMLVGEIAHPQPGQKVLDLCAAPGGKTTYLASFMAQE GLLVTNEINRGRAKVLAENVERFGIQNAVILNESPDRLVKKFNGYFDLIVVDAPCSGEGM FRKDPEAIEYWSLEYPEECARRQREILKSAMQLLAPNGNLVYSTCTFAPEEDEQIIAWLL ENYPDLKMEPVARTENMDAGRPEWANGNPELAKAIRLFPHHFKGEGHFIAKLSNHAEAAT PQPKGKRKKKGRASDISLDREQQRLWQDFANQFLVNPQSFAKDHLIVHNQRLYYQTVPVD LSGLRIVKPGLELGEFKKRRFEPSLGLLMALRKADIQQVVEITPEQWQKYVHGEEIATEA AGKGWVALAVDDIIVGPGKLVQGKVKNFYPKGLRINFAVK >gi|269838504|gb|ACXB01000007.1| GENE 9 9813 - 10625 808 270 aa, chain + ## HITS:1 COG:SPy1737 KEGG:ns NR:ns ## COG: SPy1737 COG0561 # Protein_GI_number: 15675586 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Streptococcus pyogenes M1 GAS # 1 264 1 267 270 200 40.0 2e-51 MQQKLITLDLDGTTLNNHSQLSPLTIKTLQKATRAGHLVSIVTGRPYRMARDIYDQLQLT TPMANFNGALTHIPHQKWDGEYSMTINKAVVYDLMRHKDDYGIKLLAVENKHSFFADHAA PATFDFFPHEISDDQVLTEESLRGNPTSITILVEPNSAQFVKNQLLYHYRDYINVGVWGG PHSVLEIVSKGIQKAKAVDYLARYYHIDRQNIIAFGDEHNDAEMLDYVGRGVAMRNATAQ IKSIANDITEFDNEHDGVAKYLSEYLDLAN >gi|269838504|gb|ACXB01000007.1| GENE 10 10706 - 10894 365 62 aa, chain - ## HITS:1 COG:SAS044 KEGG:ns NR:ns ## COG: SAS044 COG1942 # Protein_GI_number: 15926943 # Func_class: R General function prediction only # Function: Uncharacterized protein, 4-oxalocrotonate tautomerase homolog # Organism: Staphylococcus aureus N315 # 1 61 2 62 62 63 54.0 1e-10 MPLIHIDLIEGRSEDQLRGLVKDVTAAVVKNTGAPAEHVHVVLNEMQKNRYSVAGVLKSD EK >gi|269838504|gb|ACXB01000007.1| GENE 11 11079 - 12509 1032 476 aa, chain + ## HITS:1 COG:L324 KEGG:ns NR:ns ## COG: L324 COG4690 # Protein_GI_number: 15673540 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidase # Organism: Lactococcus lactis # 5 473 6 473 474 337 39.0 2e-92 MTITQKYSACTSFLAGKLATADGSTMIARNEDAKSAWPKHFVVHPHHVSTADERTFKSND NGFTTKLPEVRGKYTATPEWTAEFGLFEEDGINEYGVAMSATESAYTNERVLGFDPLVKD GLGEEAMVTVTLPYVHSAREGVQYLAKLIEENGTNETNGILFADADEVWYMETAGGHQWV AQRIPDDCYAVVANQLSIQEIDFDDPDHFMFKADIREFVAQHHLNPNPASFNFREIFGVN DLSDEYYNTPRVWEGQRILNPEIKQSPTSHDLPFIRRASRLIQVEDVQQILSSHYEGTPY NPVGTGTETEKHQFRPISLPATQESHILQIKPDLPIEIGGIHWLAMGVAAQSVYVPFFAG MSSTPEMYHHGEKIYSADSAYWVFKLASVLTDAHYQQFIKALNDTRSKVNVAMKNKLHEY ETQATQIDRQELTPLLNQAGTEISDIAIKAYQALTAELITKSTDLSPLYFAHNPEL >gi|269838504|gb|ACXB01000007.1| GENE 12 12568 - 14406 1689 612 aa, chain - ## HITS:1 COG:SP1200 KEGG:ns NR:ns ## COG: SP1200 COG0481 # Protein_GI_number: 15901063 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane GTPase LepA # Organism: Streptococcus pneumoniae TIGR4 # 5 608 4 607 607 892 73.0 0 MNEYKDLKDRQAHIRNFSIVAHIDHGKSTLADRILELTDTVAKRDMQNQLLDTMDLERER GITIKLNAVELHYTAKDGEKYIFHLIDTPGHVDFSYEVSRSLAACEGAVLVVDAAQGVEA QTLANVYLAIDDDLEIVPVINKIDLPAADPKRVQDEIENVIGLDASDAVMASAKQGIGIE ELLEQIVEKVPAPDGDLDAPLQALIFDSKYDDYRGVVLSVRLFEGMVKPGDTIKLMNSGA TYEVNEVGVNSPNPLKREYLMAGDVGYITASIKDIKDTRVGDTVTLLNNPAAKPLEGYRE MNPMVYSGLYPTDNAKYNDLREALEKLQLNDAALEFEPESSQALGFGFRCGFLGLLHMDV IQERLEREFNLDLITTAPSVTYRVELTDGSEISVENPSEMPDASNIKNIKEPYVNADIMV PNDYVGAVMELAQYRRGIFNTMDYIDENRVDVKYELPLSEIIFDFFDKLKSSTHGYASLD YELGEYKVSNLVKIDILLNGDRVDALSFIAHRDFAQQRGNEITASLKEIIPRRNFEIPVQ AAIGNKIIARTNIRAYRKDVTARIHTGDPDRRAKLLEKQKRGKKRMKSVGKVEVPQEAFM TVLKTDTESKGK >gi|269838504|gb|ACXB01000007.1| GENE 13 14585 - 15274 367 229 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MAENEQKVTQTQSSSKETTSSPAASSHATQNNNNHNSNQNHQSSSQPRQSQPSSSAPAQS HASSRPASSAPSSSAKSSSRPAERQSQTNHNGNWRWQSHEYNFGNQNQAPSSSTVDDEST DESSKESSEKSKSAKHSSSSKAHKAKKSKIITTVESDTSHSSGIEYNEHHGGLWTALILL IIIVGGYLFWRKKHPRTATAPSEHRGKRRFRPNLNFFVKPVGRHGKRRR >gi|269838504|gb|ACXB01000007.1| GENE 14 15481 - 16653 943 390 aa, chain - ## HITS:1 COG:ECs3958 KEGG:ns NR:ns ## COG: ECs3958 COG3250 # Protein_GI_number: 15833212 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase/beta-glucuronidase # Organism: Escherichia coli O157:H7 # 22 385 655 1027 1042 183 30.0 5e-46 MADDQLLTSGRISLPSIPARQTQEIQLLDELPLAGEPGATYYLNLSYRLRRNTSFAPAGF ELATAQFVLPIQSSRILVSPRGTLQVSEGATTLKISGNNFTVTLDTVCGQLIDYQKDGQK LLKRGPQFTFWRAPTSNDMEIVTEMKQRQFLHLEHEVVRDFSWQASEQEAVVRVKTMHGT TNSAWHFDCQYEYRILATGDILFKLNGTPDGKLDMTPDMLPRLGVDLRLNPDLAQVRYFG RGPRENYVDSREAGLLGVYTTDVDSLFTNYVVPQANGNHLDTKWASLTDERGQGMLFSNP SGINFSASYYEQRDLDEAKHTIDLKKRDYVVLNLDYQQNALGSFSCGQWQLEKYRTKVTD FELSFRMTGFNQKEVRDTVLAREELVDEFD >gi|269838504|gb|ACXB01000007.1| GENE 15 16733 - 18556 1221 607 aa, chain - ## HITS:1 COG:ECs3958 KEGG:ns NR:ns ## COG: ECs3958 COG3250 # Protein_GI_number: 15833212 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase/beta-glucuronidase # Organism: Escherichia coli O157:H7 # 1 597 13 609 1042 544 46.0 1e-154 MKQWENYQVDGINRMAPRAHFNSYPTRERALIGENRYTQAFKNLNGVWKFMFLPAPEYSP ENFFASDFDTTTMDEITVPGNWQRQGYGKMHYSDLWYNFPIDPPYVPTENPTGIYKRTFE VGAEFKDQTIILRFCGVDSAYKVWVNGQMVGYSKGARNEAEFDITDLVYLHEVNDLSVQV YQWSDGTYLEDQDMWWLSGIYRDVELLGVPKNGIQDFQVTANLLHDYQDGDLQITATLRK EAGQTVQVELLDEKQNVLYTATNQPQGTQVKFETQIPHVKPWSAELPHLYTVLMTVKHAE QVIEVIPQTVGFRSIEVVGDTFLVNGVAIKLKGVNRHDYNPRNGRVVSEAEIEKDIILMK QFNINAIRTSHYPDAYYFYDLCDRYGMYVIDETDLECHGFELTEKYDWISDDPQWGTSFV NRLIRMIARDRNHPSIIFWSLGNESSFGCNFRKMAEVAKEMDPTRLVHYEGDFDAEVVDV YSTMYTWLEHPTRKLLMKDVIKNAKKPHILCEYGHAMGNGPGNLKEYQDLFYAHDKLQGG FIWEWFDHGIESYTEDGRKYYRYGGDFGDDPTNGDFCIDGLLMPDRTPSPGLYEYKKSNR AGNHRKS >gi|269838504|gb|ACXB01000007.1| GENE 16 18575 - 20029 1363 484 aa, chain - ## HITS:1 COG:ECs3960 KEGG:ns NR:ns ## COG: ECs3960 COG0531 # Protein_GI_number: 15833214 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Escherichia coli O157:H7 # 2 477 3 457 477 331 40.0 2e-90 MNNSRERLGPVALMLMTFSAVFAFPSIVNNSIQIGLATIPGYIFGSVFYFLPFILMIAEF ASANAENESGIHSWLASVLGERWAFLGAWSYFFVNLFFFCSLLPNTLIYASYSFVGKNVF EGSHGTKVIAIISVILFWIMTWVCIKGVSWISKVTNFAGSARLFMGVAFVILAFIVVFGF GKAPAQDFTLKSITPKFNWTFFMTMAWILQAVGGGESIGVYIKDVKGGNKTFVKTMIGAT VIVGIMYILGAVAVGLVVPTEVLKGNFSNGIFDIFKILGNYFNIPGGVMVRLVGVILCLG SLGSLALWTAAPVKVFFSEIPEGVFGKWLVRTNEEGNPTNALIVQGIIVTTLLIVPALGI GSMDSFLETLINMTASTSLLPVLFLLIAYIQLRWKKDDMPRSFKLGHRAFGITVGIFLLL TFIFVFFMSTVPDPHLIMQEIHGALPKGTASPIGMLVYNVVGLIVFMGFAWICWYRYERK QRLN >gi|269838504|gb|ACXB01000007.1| GENE 17 20167 - 21009 642 280 aa, chain + ## HITS:1 COG:SP1899 KEGG:ns NR:ns ## COG: SP1899 COG2207 # Protein_GI_number: 15901726 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Streptococcus pneumoniae TIGR4 # 28 275 20 275 286 97 25.0 2e-20 MNNQFTEDVSILVDNDPLSAEFHIYEVGYEKCQPTKPFEYIPIDYWVLHYVMDGKGYFSA GNSDLQHLSAGDTFLLPANCPNIYYPDKADPWTYVWVGISGELTAKYLAQIGLSRRNFVI NASIDKTKEMLFNHVYQAFKDKQNFQSLSAVYSLLDYLQQENHANNPVNQGKQIFDKILL YVDENFASGLTISQIAANNNVDRSYLYKLFQRYLGKKPSQYVHQLKLQKACSLLRKSSLN ITQISQECGFSSSAYFTNVFAKEMNSTPLKYRNRFIRARN >gi|269838504|gb|ACXB01000007.1| GENE 18 21114 - 21677 537 187 aa, chain + ## HITS:1 COG:BH2746 KEGG:ns NR:ns ## COG: BH2746 COG1611 # Protein_GI_number: 15615309 # Func_class: R General function prediction only # Function: Predicted Rossmann fold nucleotide-binding protein # Organism: Bacillus halodurans # 1 172 1 170 190 130 37.0 1e-30 MKITVFCGSRPGNHPNFKEVAYNIGTTLAQKNVELVYGGSTSGTMGAISQGVLDHGGKVT GIYPEGLFEDELPRKNTTSFITTKTMAKRKELLINKGDAYLVLPGGLGTLEEVSQLLSDM AIGLIPLKKVGILNINGYYDHLISLLDNFVDTAFMESIYRKQLVVTDDYQKLVTAILATT DSAEISA >gi|269838504|gb|ACXB01000007.1| GENE 19 21779 - 22519 227 246 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 12 241 6 238 242 92 28 4e-18 MSQITEFTDCQVVVTGSNSGIGLAQAQAFLEQGALVWGFDQNIDQMDQIQKQYPNHFKFT QVDLSDPLAVTKALQPLERIDILLNTAGMLDDYLPIEDTSLTLWQRILNNNVTSMFNVTK TALPKMKHSGVIINMASIAGMVAGGGGIAYTASKHAIVGFTKQLAMDCAPKGIRVNGIAP GCIDTPMNAKDFADGGEIAKAVAQEVPVKRWAKPTEVASVTLFLASQAASYLQGVIIPVD GGWVAK >gi|269838504|gb|ACXB01000007.1| GENE 20 22519 - 22740 352 73 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0902 NR:ns ## KEGG: PEPE_0902 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 73 1 73 73 126 82.0 2e-28 MTFEKILPILKQGGKAIRQQWNGDEEFVIVVENQTFAGVPVTPYMLIKTTSEGYSSFAPT VCDVLADDWQVVE >gi|269838504|gb|ACXB01000007.1| GENE 21 22765 - 23247 500 160 aa, chain - ## HITS:1 COG:lin0860 KEGG:ns NR:ns ## COG: lin0860 COG4708 # Protein_GI_number: 16799934 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 8 158 6 157 162 77 32.0 1e-14 MSKINRNIAATGVVAALYVAITLIFAPISYGVVQLRLSEMFNHLAAFNKRYIFAVTLGVL IVNIFSPLGVVDMIFGTAGTLIGTTLTYFTARNIGAKPLKFLIATLCQLPGMFLVDLEMH LYMNLPLFPTYWVLALGEIASMAIGAVIIYLITKKINLYE >gi|269838504|gb|ACXB01000007.1| GENE 22 23561 - 24517 651 318 aa, chain - ## HITS:1 COG:STM2573 KEGG:ns NR:ns ## COG: STM2573 COG1893 # Protein_GI_number: 16765893 # Func_class: H Coenzyme transport and metabolism # Function: Ketopantoate reductase # Organism: Salmonella typhimurium LT2 # 1 304 1 303 305 301 50.0 2e-81 MKVAIAGAGAMGCRFGAMLAEAGVQVTLIDQWQEHIQTINESGLRVENEQGTQNYHIPAL FPEQATGRFDLVIVFTKAMQMTDFLHKIIPIIDEQTTLLCLSNGFGNEETLRQFVSADQI LIGVTLWSSELLGPGQIKATGKGRIDFQAVSSDFAPAKLTTVLNLLNEAGLQASLVKNVH ESIWRKAGFNSVINPLSALLDCNVAEFGQLNYGTQLTDLILEEINAVAQAEGIPFSVRII KQMLEAQFNPQASGQHYPSMHQDLNKQRLTEIDFLNGYIVKLGRKHQLATPVNQMITGLI HSKEQLGQLGGSLTDRKI >gi|269838504|gb|ACXB01000007.1| GENE 23 24514 - 25728 774 404 aa, chain - ## HITS:1 COG:STM2574 KEGG:ns NR:ns ## COG: STM2574 COG0477 # Protein_GI_number: 16765894 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Salmonella typhimurium LT2 # 1 396 1 397 398 469 66.0 1e-132 MKQNLNRWVMLTAHVLINFVLGGVYAFSFFKTPLIAQYHWDPAVLSLAFSINMGIIPLPM IWGGALIDRGHGKLAIVLGGVLFSIGFILSGFVKTLPLLLLTYGLIAGIGSGLAFTGNLN NAIKFFPDKRGLASGCVLAGVGVGTLLCTALAQFFLTKMNISQSLFWLGMVYLVVIFVVQ FFIRSAPAKDSKQLVASKMEQNWRGMLKDRRFWLMFWIMAFGVFSGMVISSSSAQIGMGA YGLTAGAVVVSGVSIANSVGRLIWGTVSDWLGEYHTLALVYALMALFMVLLLLGKGNTIL FYVCALGIGFCYAGVLAVFPSITSANFGLRNQGLNYAFIYFGFAIGAVVAPYVTAAFFKY THSFAIVFIIAMGLLVLGVLAIYLLKAWAKEALQRIEQKGVKKL >gi|269838504|gb|ACXB01000007.1| GENE 24 25859 - 26749 698 296 aa, chain + ## HITS:1 COG:STM2575 KEGG:ns NR:ns ## COG: STM2575 COG0583 # Protein_GI_number: 16765895 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Salmonella typhimurium LT2 # 1 289 1 289 308 156 32.0 4e-38 MNLRQLEYFLVLSEELNYHQAAERLFIAQPTLSVQMSNLQREIGQPLFLKVGRHIMLTNA GLILQSHARKILRQVRATKQALQPRSEPASIKIGLSGTHLLTPLLKTFQKINPHTSFTLR ENTSASTLKQLLNAEINFGIAFLPIHNPAINYRYLFTDEIIAVTTKTGPYHTLENITLTQ LTKVPLIVLDPQFAIRQTLDQLFLNQHLSPQYLVEVTSYSACISALSQLTGIALVTRSFF ETQKAGHADLKVISVEEPGLKQALALVFPADIPPSPKTTILMDQIQKYYLTKEQPS >gi|269838504|gb|ACXB01000007.1| GENE 25 26746 - 27417 314 223 aa, chain - ## HITS:1 COG:no KEGG:SLGD_00208 NR:ns ## KEGG: SLGD_00208 # Name: not_defined # Def: membrane spanning protein # Organism: S.lugdunensis # Pathway: ABC transporters [PATH:slg02010] # 5 222 40 254 255 77 26.0 5e-13 MSFDDAISAPWLVMSSFGIDEIAPLIMILVAATFFSSEFKQRTILTMLAKTPSRKDVYLA KLTVVGLCDVAIHGFAVIMTLILNFALPKFRLDLFKPYLYHQSLLTNVLTMTLVDILVTM FLVSILFLISCSITENAVVLAISLGVFFMGQIVPPGIQFLPQQYLHWLRWNPLNMMLLPL QYANYPVYHDMSHLSTLQLGVATAGYAIVFAVLGYQIFRRRHY >gi|269838504|gb|ACXB01000007.1| GENE 26 27529 - 28284 352 251 aa, chain - ## HITS:1 COG:no KEGG:SH2303 NR:ns ## KEGG: SH2303 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: ABC transporters [PATH:sha02010] # 1 244 1 251 256 74 24.0 4e-12 MRSSLQQEFYKFIHRRGYWGGIVALWLLMAVSVWLEGTTFDSVAQSYDWGRWAAMVMSIL VATDFGGEYENETIDTLFYKNTSRGGVFLAKLLVLLGYVLILSLAGGIFTMVIQATHAPS TLTWDLVVNHQSLWNAALLTGLGASGMVALITVLTIGVTCLTRSKIVAMGFSFVLIFTGP TLAGALPKIIDGPWIKWNPLNMLQLASQVANPALKSVTKLSTAQLAWGTTIYAVIFTMLS YLFFSWGQRSK >gi|269838504|gb|ACXB01000007.1| GENE 27 28284 - 29162 685 292 aa, chain - ## HITS:1 COG:SA2302 KEGG:ns NR:ns ## COG: SA2302 COG1131 # Protein_GI_number: 15928093 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Staphylococcus aureus N315 # 1 211 3 213 231 180 48.0 2e-45 MLEVNQLDVFIGRKQIIKGASFQVGDGEIVGLIGPNGAGKTTIMKTILALTKFKGQVLVN HQTVTSNHHQALLKVGALIEHPALYPYMTGRQNLALYAQSEVEIDELAHALEMETYIDTR AKGYSLGMKQKLGIALALLNHPDLVILDEPMNGLDVEATILVRNLILRMAQKGTAFLISS HILSELERVVSNVVLINKGKILLTDSLKNFQRGNSRYYQITTDNLFASYELLESHGVVSE LQKDYLKINAPDLQAAEKLLVENEQYLLTVAPEKLTFEQQVVKSLRSRQEVR >gi|269838504|gb|ACXB01000007.1| GENE 28 29479 - 29628 63 49 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MQDIPKVVRVALLPSLFLRVEFADGAVRYWRSAINKTELDLLKKSWKPA >gi|269838504|gb|ACXB01000007.1| GENE 29 29835 - 30065 354 76 aa, chain + ## HITS:1 COG:BH3345 KEGG:ns NR:ns ## COG: BH3345 COG2155 # Protein_GI_number: 15615907 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus halodurans # 1 60 1 60 75 68 51.0 3e-12 MKALDLTALILVIVGGINWLLVGLFQFDLVATLFGGQTAIISKIVYILVGLSALYSLKFL GMLSHRPEDDARYNNR >gi|269838504|gb|ACXB01000007.1| GENE 30 30452 - 30925 455 157 aa, chain + ## HITS:1 COG:L173469 KEGG:ns NR:ns ## COG: L173469 COG3476 # Protein_GI_number: 15672561 # Func_class: T Signal transduction mechanisms # Function: Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) # Organism: Lactococcus lactis # 11 157 12 160 160 129 55.0 2e-30 MTKRNPNWILLIASIIVVELVGSLSGILSGDIKAIYNNLTLPPLAPPDFIFGIVWPILYL MIGIVGYLILRDRTNARQNNLILFISQLVLNFIWSIIFFGASNRWISFLIIIVLDALVIW CVKKFWQTSKLAASLMVPYLIWILFATYLTLGTAILN >gi|269838504|gb|ACXB01000007.1| GENE 31 31087 - 31455 333 122 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MQDKLKRSANEFIIANRVKNDYETVCLIESIKTLTSKIELQIVQMREHIKLATVQLHEAR GEFQEYYARLNSLTNSTEIEKKTKEQKQSLDHYYFAELNLNIKRLEMEVGQIRAANKVFI NS Prediction of potential genes in microbial genomes Time: Fri May 27 06:33:15 2011 Seq name: gi|269838503|gb|ACXB01000008.1| Pediococcus acidilactici 7_4 cont1.8, whole genome shotgun sequence Length of sequence - 103370 bp Number of predicted genes - 117, with homology - 113 Number of transcription units - 40, operones - 25 average op.length - 4.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 13 - 264 123 ## gi|255972479|ref|ZP_05423065.1| predicted protein 2 1 Op 2 . - CDS 278 - 784 212 ## gi|256762812|ref|ZP_05503392.1| predicted protein 3 1 Op 3 . - CDS 793 - 1557 117 ## gi|255972479|ref|ZP_05423065.1| predicted protein - Prom 1754 - 1813 5.5 - Term 1760 - 1827 14.2 4 2 Op 1 31/0.000 - CDS 1843 - 2967 1200 ## COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain - Term 3005 - 3041 7.3 5 2 Op 2 29/0.000 - CDS 3061 - 4917 2259 ## COG0443 Molecular chaperone 6 2 Op 3 21/0.000 - CDS 4944 - 5546 772 ## COG0576 Molecular chaperone GrpE (heat shock protein) 7 2 Op 4 . - CDS 5557 - 6597 1070 ## COG1420 Transcriptional regulator of heat shock gene - Prom 6643 - 6702 5.0 8 3 Op 1 12/0.000 - CDS 6705 - 7652 593 ## PROTEIN SUPPORTED gi|163762565|ref|ZP_02169630.1| ribosomal protein S2 9 3 Op 2 . - CDS 7653 - 8555 871 ## COG0130 Pseudouridine synthase 10 3 Op 3 . - CDS 8567 - 8755 83 ## 11 3 Op 4 32/0.000 - CDS 8748 - 9098 448 ## COG0858 Ribosome-binding factor A 12 3 Op 5 10/0.000 - CDS 9115 - 11748 2703 ## COG0532 Translation initiation factor 2 (IF-2; GTPase) 13 3 Op 6 8/0.000 - CDS 11761 - 12060 194 ## PROTEIN SUPPORTED gi|167465396|ref|ZP_02330485.1| L7Ae family ribosomal protein 14 3 Op 7 22/0.000 - CDS 12060 - 12356 386 ## COG2740 Predicted nucleic-acid-binding protein implicated in transcription termination 15 3 Op 8 32/0.000 - CDS 12378 - 13544 750 ## PROTEIN SUPPORTED gi|17988250|ref|NP_540884.1| transcription elongation factor NusA 16 3 Op 9 4/0.143 - CDS 13558 - 14034 319 ## COG0779 Uncharacterized protein conserved in bacteria - Prom 14069 - 14128 3.1 - Term 14057 - 14092 5.1 17 4 Tu 1 . - CDS 14156 - 18466 3550 ## COG2176 DNA polymerase III, alpha subunit (gram-positive type) - Prom 18510 - 18569 3.9 - Term 18553 - 18583 1.0 18 5 Op 1 7/0.000 - CDS 18602 - 20317 1584 ## COG0442 Prolyl-tRNA synthetase 19 5 Op 2 . - CDS 20346 - 20789 498 ## COG0750 Predicted membrane-associated Zn-dependent proteases 1 20 5 Op 3 12/0.000 - CDS 20737 - 21609 701 ## COG0750 Predicted membrane-associated Zn-dependent proteases 1 21 5 Op 4 32/0.000 - CDS 21630 - 22415 805 ## COG0575 CDP-diglyceride synthetase 22 5 Op 5 19/0.000 - CDS 22426 - 23175 832 ## COG0020 Undecaprenyl pyrophosphate synthase - Prom 23198 - 23257 7.4 - Term 23239 - 23285 4.0 23 6 Op 1 33/0.000 - CDS 23307 - 23867 802 ## COG0233 Ribosome recycling factor 24 6 Op 2 24/0.000 - CDS 23869 - 24591 762 ## COG0528 Uridylate kinase - Prom 24656 - 24715 5.2 - Term 24694 - 24729 1.5 25 6 Op 3 38/0.000 - CDS 24750 - 25628 567 ## PROTEIN SUPPORTED gi|42631241|ref|ZP_00156779.1| COG0264: Translation elongation factor Ts - Prom 25659 - 25718 5.9 26 6 Op 4 . - CDS 25744 - 26529 1330 ## PROTEIN SUPPORTED gi|1350975|sp|P49668|RS2_PEDAC RecName: Full=30S ribosomal protein S2 gi|897795|emb|CAA50276.1| 30S ribosomal protein - Term 26643 - 26691 -1.0 27 7 Op 1 . - CDS 26692 - 27687 1134 ## COG1052 Lactate dehydrogenase and related dehydrogenases 28 7 Op 2 6/0.000 - CDS 27731 - 28027 304 ## COG2827 Predicted endonuclease containing a URI domain 29 7 Op 3 . - CDS 28011 - 28763 498 ## COG4123 Predicted O-methyltransferase - Prom 28786 - 28845 3.6 + Prom 28750 - 28809 4.5 30 8 Tu 1 . + CDS 28840 - 29487 337 ## COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase + Term 29517 - 29556 -1.0 - Term 29464 - 29494 1.0 31 9 Op 1 . - CDS 29499 - 29720 254 ## COG3763 Uncharacterized protein conserved in bacteria 32 9 Op 2 . - CDS 29790 - 30038 368 ## PEPE_0871 hypothetical protein - Prom 30109 - 30168 8.5 + Prom 30065 - 30124 6.1 33 10 Op 1 . + CDS 30145 - 30774 526 ## COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases) 34 10 Op 2 . + CDS 30855 - 31061 121 ## 35 10 Op 3 . + CDS 31009 - 31464 464 ## PEPE_0869 hypothetical protein + Term 31486 - 31532 11.3 - Term 31474 - 31520 11.3 36 11 Tu 1 . - CDS 31566 - 32735 1253 ## COG3425 3-hydroxy-3-methylglutaryl CoA synthase - Prom 32916 - 32975 8.9 + Prom 33206 - 33265 6.2 37 12 Tu 1 . + CDS 33433 - 34122 677 ## LACR_2273 hypothetical protein + Term 34330 - 34363 3.0 - Term 34317 - 34351 3.2 38 13 Op 1 . - CDS 34389 - 35147 797 ## COG0623 Enoyl-[acyl-carrier-protein] reductase (NADH) 39 13 Op 2 10/0.000 - CDS 35164 - 35931 634 ## COG0825 Acetyl-CoA carboxylase alpha subunit 40 13 Op 3 4/0.143 - CDS 35948 - 36772 770 ## COG0777 Acetyl-CoA carboxylase beta subunit 41 13 Op 4 4/0.143 - CDS 36762 - 38129 1400 ## COG0439 Biotin carboxylase 42 13 Op 5 4/0.143 - CDS 38146 - 38556 394 ## COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases 43 13 Op 6 4/0.143 - CDS 38569 - 38994 613 ## COG0511 Biotin carboxyl carrier protein 44 13 Op 7 11/0.000 - CDS 38999 - 40225 1394 ## COG0304 3-oxoacyl-(acyl-carrier-protein) synthase 45 13 Op 8 26/0.000 - CDS 40241 - 40969 219 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 - Prom 40990 - 41049 2.0 - Term 40980 - 41024 9.3 46 14 Op 1 . - CDS 41054 - 41998 861 ## COG0331 (acyl-carrier-protein) S-malonyltransferase 47 14 Op 2 . - CDS 42025 - 42261 431 ## PEPE_0856 acyl carrier protein 48 14 Op 3 . - CDS 42288 - 43247 929 ## COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III 49 14 Op 4 . - CDS 43260 - 43709 461 ## COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases - Prom 43795 - 43854 8.7 + Prom 43962 - 44021 4.6 50 15 Op 1 . + CDS 44082 - 44438 237 ## COG1416 Uncharacterized conserved protein 51 15 Op 2 . + CDS 44460 - 44786 428 ## COG0393 Uncharacterized conserved protein + Term 44807 - 44854 5.2 - Term 44999 - 45056 7.1 52 16 Tu 1 . - CDS 45192 - 45422 233 ## LSA1873 hypothetical protein - Term 45457 - 45500 6.8 53 17 Tu 1 . - CDS 45538 - 45909 545 ## PROTEIN SUPPORTED gi|116492617|ref|YP_804352.1| 50S ribosomal protein L19 - Prom 45947 - 46006 1.9 54 18 Op 1 4/0.143 - CDS 46025 - 46780 791 ## COG0390 ABC-type uncharacterized transport system, permease component 55 18 Op 2 . - CDS 46764 - 47429 225 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) - Prom 47458 - 47517 7.0 56 19 Op 1 30/0.000 - CDS 47611 - 48348 596 ## COG0336 tRNA-(guanine-N1)-methyltransferase 57 19 Op 2 12/0.000 - CDS 48348 - 48863 504 ## COG0806 RimM protein, required for 16S rRNA processing - Term 48872 - 48924 15.1 58 20 Op 1 23/0.000 - CDS 48940 - 49212 442 ## PROTEIN SUPPORTED gi|116492614|ref|YP_804349.1| 30S ribosomal protein S16 - Prom 49238 - 49297 7.4 59 20 Op 2 8/0.000 - CDS 49325 - 50758 1444 ## COG0541 Signal recognition particle GTPase 60 20 Op 3 7/0.000 - CDS 50775 - 51116 351 ## COG2739 Uncharacterized protein conserved in bacteria 61 20 Op 4 10/0.000 - CDS 51122 - 52279 1274 ## COG0552 Signal recognition particle GTPase 62 20 Op 5 6/0.000 - CDS 52280 - 55834 3114 ## COG1196 Chromosome segregation ATPases 63 20 Op 6 7/0.000 - CDS 55844 - 56542 500 ## COG0571 dsRNA-specific ribonuclease - Prom 56583 - 56642 4.0 - Term 56580 - 56633 10.5 64 21 Op 1 3/0.143 - CDS 56644 - 56886 348 ## COG0236 Acyl carrier protein 65 21 Op 2 . - CDS 56928 - 57971 1173 ## COG0416 Fatty acid/phospholipid biosynthesis enzyme 66 21 Op 3 4/0.143 - CDS 58005 - 60011 1792 ## COG1200 RecG-like helicase - Prom 60035 - 60094 2.0 67 22 Op 1 9/0.000 - CDS 60134 - 61816 1791 ## COG1461 Predicted kinase related to dihydroxyacetone kinase 68 22 Op 2 . - CDS 61842 - 62204 412 ## COG1302 Uncharacterized protein conserved in bacteria - Prom 62298 - 62357 5.0 69 23 Tu 1 . + CDS 62501 - 62686 306 ## PROTEIN SUPPORTED gi|116492603|ref|YP_804338.1| 50S ribosomal protein L28P + Term 62716 - 62767 11.5 - Term 62702 - 62755 8.1 70 24 Op 1 6/0.000 - CDS 62770 - 63411 628 ## COG1564 Thiamine pyrophosphokinase 71 24 Op 2 10/0.000 - CDS 63411 - 64058 910 ## COG0036 Pentose-5-phosphate-3-epimerase 72 24 Op 3 7/0.000 - CDS 64055 - 64984 533 ## COG1162 Predicted GTPases 73 24 Op 4 17/0.000 - CDS 64997 - 66520 1171 ## COG0515 Serine/threonine protein kinase 74 24 Op 5 3/0.143 - CDS 66520 - 67263 644 ## COG0631 Serine/threonine protein phosphatase 75 24 Op 6 20/0.000 - CDS 67273 - 68607 1000 ## COG0144 tRNA and rRNA cytosine-C5-methylases 76 24 Op 7 4/0.143 - CDS 68588 - 69553 863 ## COG0223 Methionyl-tRNA formyltransferase 77 24 Op 8 5/0.143 - CDS 69575 - 71995 1723 ## COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase 78 24 Op 9 10/0.000 - CDS 72009 - 73199 998 ## COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase - Prom 73220 - 73279 2.6 - Term 73263 - 73328 12.4 79 25 Op 1 25/0.000 - CDS 73390 - 73599 379 ## COG1758 DNA-directed RNA polymerase, subunit K/omega 80 25 Op 2 . - CDS 73601 - 74215 699 ## COG0194 Guanylate kinase - Prom 74244 - 74303 5.6 + Prom 74216 - 74275 3.9 81 26 Tu 1 . + CDS 74389 - 74736 312 ## PEPE_0824 hypothetical protein + Term 74909 - 74953 5.1 - Term 74635 - 74696 -0.9 82 27 Tu 1 . - CDS 74863 - 75096 171 ## - Prom 75150 - 75209 4.6 83 28 Op 1 8/0.000 - CDS 75261 - 76940 1782 ## COG0497 ATPase involved in DNA repair 84 28 Op 2 6/0.000 - CDS 76952 - 77410 340 ## COG1438 Arginine repressor 85 28 Op 3 3/0.143 - CDS 77419 - 78237 966 ## COG1189 Predicted rRNA methylase 86 28 Op 4 22/0.000 - CDS 78251 - 79135 714 ## COG0142 Geranylgeranyl pyrophosphate synthase 87 28 Op 5 14/0.000 - CDS 79128 - 79364 355 ## COG1722 Exonuclease VII small subunit 88 28 Op 6 7/0.000 - CDS 79364 - 80707 1353 ## COG1570 Exonuclease VII, large subunit 89 28 Op 7 4/0.143 - CDS 80707 - 81558 679 ## COG0190 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase - Prom 81590 - 81649 7.9 - Term 81625 - 81669 7.1 90 29 Op 1 10/0.000 - CDS 81678 - 82040 438 ## COG0781 Transcription termination factor 91 29 Op 2 4/0.143 - CDS 82079 - 82510 542 ## COG1302 Uncharacterized protein conserved in bacteria 92 29 Op 3 . - CDS 82530 - 83093 764 ## COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) - Prom 83115 - 83174 6.1 - Term 83155 - 83194 6.2 93 30 Op 1 14/0.000 - CDS 83210 - 83497 492 ## PROTEIN SUPPORTED gi|116492580|ref|YP_804315.1| 50S ribosomal protein L27 94 30 Op 2 14/0.000 - CDS 83522 - 83848 425 ## PROTEIN SUPPORTED gi|116492579|ref|YP_804314.1| ribosomal protein 95 30 Op 3 . - CDS 83871 - 84179 479 ## PROTEIN SUPPORTED gi|116492578|ref|YP_804313.1| 50S ribosomal protein L21P 96 31 Tu 1 . - CDS 84310 - 84939 583 ## COG1309 Transcriptional regulator - Prom 85189 - 85248 9.1 - Term 85333 - 85378 7.3 97 32 Tu 1 . - CDS 85481 - 85993 547 ## PEPE_0809 hypothetical protein - Prom 86096 - 86155 8.2 - TRNA 86158 - 86231 80.0 # Arg TCT 0 0 - Term 86298 - 86344 7.0 98 33 Tu 1 . - CDS 86351 - 86578 313 ## PEPE_0743 hypothetical protein - Prom 86633 - 86692 4.4 - Term 86597 - 86629 -0.9 99 34 Op 1 . - CDS 86721 - 87260 534 ## PEPE_0742 dUTPase 100 34 Op 2 . - CDS 87274 - 88206 775 ## PEPE_0741 hypothetical protein 101 34 Op 3 . - CDS 88199 - 89074 850 ## PEPE_0740 hypothetical protein - Prom 89197 - 89256 7.6 - Term 89221 - 89277 13.5 102 35 Op 1 5/0.143 - CDS 89400 - 90740 1135 ## COG0174 Glutamine synthetase 103 35 Op 2 3/0.143 - CDS 90771 - 91136 462 ## COG0789 Predicted transcriptional regulators 104 35 Op 3 . - CDS 91216 - 92475 1409 ## COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance 105 35 Op 4 . - CDS 92472 - 93389 717 ## COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase 106 35 Op 5 . - CDS 93391 - 94125 489 ## COG0584 Glycerophosphoryl diester phosphodiesterase + Prom 94124 - 94183 3.7 107 36 Tu 1 . + CDS 94207 - 94383 273 ## PEPE_0734 hypothetical protein + Term 94425 - 94483 11.5 - Term 94421 - 94465 9.3 108 37 Op 1 2/0.286 - CDS 94469 - 94888 521 ## COG0607 Rhodanese-related sulfurtransferase 109 37 Op 2 5/0.143 - CDS 94917 - 95879 1037 ## PROTEIN SUPPORTED gi|116517028|ref|YP_816079.1| glucokinase 110 37 Op 3 3/0.143 - CDS 95879 - 96109 269 ## COG4483 Uncharacterized protein conserved in bacteria 111 37 Op 4 4/0.143 - CDS 96142 - 96831 507 ## COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid) 112 37 Op 5 . - CDS 96833 - 97411 684 ## COG0212 5-formyltetrahydrofolate cyclo-ligase 113 37 Op 6 . - CDS 97491 - 97640 267 ## PROTEIN SUPPORTED gi|116492496|ref|YP_804231.1| 50S ribosomal protein L33 - Prom 97666 - 97725 7.3 114 38 Tu 1 . - CDS 97743 - 99833 2315 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 - Prom 99862 - 99921 6.6 + Prom 99822 - 99881 3.8 115 39 Tu 1 . + CDS 99970 - 102585 1574 ## COG4485 Predicted membrane protein + Term 102608 - 102651 0.0 - Term 102666 - 102726 13.9 116 40 Op 1 . - CDS 102753 - 103238 713 ## COG0782 Transcription elongation factor 117 40 Op 2 . - CDS 103255 - 103368 56 ## Predicted protein(s) >gi|269838503|gb|ACXB01000008.1| GENE 1 13 - 264 123 83 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|255972479|ref|ZP_05423065.1| ## NR: gi|255972479|ref|ZP_05423065.1| predicted protein [Enterococcus faecalis T1] # 1 69 434 502 640 65 47.0 9e-10 MISVTFWLVFLLGGSIAGVTRIVDVIIGGSVAILILLIFPAKSNDDFAENLEDWGKVAGY ILLYMSNEEKLSDLKKRTLILYI >gi|269838503|gb|ACXB01000008.1| GENE 2 278 - 784 212 168 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256762812|ref|ZP_05503392.1| ## NR: gi|256762812|ref|ZP_05503392.1| predicted protein [Enterococcus faecalis T3] # 3 162 262 422 640 105 36.0 1e-21 MQLLQGMNVPQPAKLENADSEIQQVISILNTKQERARTFSKRSFSLANEIKTLKKMVSTT SNTTLRFASRLALTGLVCYVLSLAMDQFMIMPLEKHSFWIPLSGCLMVMPGVHDTLGKSS ARAFGSLFGACLGVLLFSILFPSQINNKLLYAVVSTILIILFFDHQKI >gi|269838503|gb|ACXB01000008.1| GENE 3 793 - 1557 117 254 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|255972479|ref|ZP_05423065.1| ## NR: gi|255972479|ref|ZP_05423065.1| predicted protein [Enterococcus faecalis T1] # 1 239 1 240 640 172 37.0 2e-41 MNKKIARYLLIWLKSTWLYSKPVWNFVSLSDWLLLSVAVLITNSIGFLLSDIWNATFILM NVGCFFGTIVCLMPRHDEPLINAIKGIAFIGLGGVVGILFSGFPLLLAIVITGGLFLTGI TYSFSINTFLRYLFCVLAVMATAGLKIGVSTANMFLGLLSFITGMAIVALIFCLYNKRLN ISLPMTASLYSQLVLISNNKKANYFEERTKVLEAVEIMPRIYQVRDPWVFQVVKSADKIL TRITWNKNKKIPRH >gi|269838503|gb|ACXB01000008.1| GENE 4 1843 - 2967 1200 374 aa, chain - ## HITS:1 COG:L0272 KEGG:ns NR:ns ## COG: L0272 COG0484 # Protein_GI_number: 15674206 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: DnaJ-class molecular chaperone with C-terminal Zn finger domain # Organism: Lactococcus lactis # 6 372 5 378 379 436 68.0 1e-122 MAGSKDYYDILGVSRDASEDEIKKAYRRLSKKYHPDINKEPGAEQKFKDINEAYDVLGDA QKRAQYDQFGSADGNAGFGGGGFGDQGGFGGFGGGFDDIFSSFFGGGQRQAANQPRQGED LQYQMTLKFEEAIFGKKSTIKYSREAECKTCGGSGAKPGTSPETCHKCHGTGSIQVTQNT PLGRMVRQQVCDVCNGTGKEIKEKCPTCGGTGHTKQEHEVKVSVPAGVEDGQQMRLQGQG EAGYNGGPYGDLYIIFQVQPSKIYEREGSEIYYDQSISFVQAALGDEIEVPTVHGKVKLK IPAGTQTGTNFRLKGKGAPRLRGNGNGDQHVHVKVKVPKKLNAGQKEALKLFAKASGEHP SGNGKGGFFDKFMN >gi|269838503|gb|ACXB01000008.1| GENE 5 3061 - 4917 2259 618 aa, chain - ## HITS:1 COG:BS_dnaK KEGG:ns NR:ns ## COG: BS_dnaK COG0443 # Protein_GI_number: 16079601 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone # Organism: Bacillus subtilis # 4 618 2 611 611 808 75.0 0 MASNKIIGIDLGTTNSAVAVMDGDKPKIITNPEGARTTPSVVAFKNGETQVGEVAKRQAI TNPNTISSIKRHIGEAGYKVTVDGKSYTPQEVSAMILSYIKKFAEDYLGEEVDQAVITVP AYFDDSQRQATKDAGKIAGLEVKRIINEPTASALAYGLDKSDKDEKILVYDLGGGTFDVS ILELGDGVFQVLSTNGDTHLGGDDFDQKIIDWLVEGFKEENGIDLSKDKMALQRLKDAAE KAKKDLSGVSEAQISLPFISAGEAGPLHLEKTLTRAQFDQLTADLVAKTKVPVDNALKDA GLSASDIDQVILNGGSTRIPAVQEAVKNWTGKEPNHSINPDEAVALGAAVQGGVLTGDVK DVVLLDVTPLSLGIETMGGVFTKLIDRNTTIPTSKSQIFSTAADNQPAVDIHVLQGERPM AADNKTLGRFQLTDIPAAPRGVPQIEVKFDIDKNGIVNVSAKDKGTGKEQKITIKSSSGL SDEEIDRMMKEAKENEEADRKRKEEVDLRNEVDQLIFTTDKTLKELEGKVSEDEIKKAKD AKEALEKAQKDNNLEEMKAKKDDLSKIVQDLSVKLYQQAQQAQGQADGAQGNDQNTGNND DNTVNGDFEEVDPDKDNK >gi|269838503|gb|ACXB01000008.1| GENE 6 4944 - 5546 772 200 aa, chain - ## HITS:1 COG:SP0516 KEGG:ns NR:ns ## COG: SP0516 COG0576 # Protein_GI_number: 15900430 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone GrpE (heat shock protein) # Organism: Streptococcus pneumoniae TIGR4 # 44 198 20 172 174 130 54.0 1e-30 MAKEDEKAKSASTEAKVEEESKGADKQAKATSQDEKNNQKDSAKDSKQTTLDPAEIEKIT AERDELSDKYIRAQAEIVNMRRRNEKEQASLLKYDGQKLAKAILPALDNLERALTVEAEH SEQLLKGVEMVQKDLLKALKENNIAEIEADGQKFDPNLHQAVQTVPADDDHPADTVVKVF QKGYILKDRVLRPAMVVVAQ >gi|269838503|gb|ACXB01000008.1| GENE 7 5557 - 6597 1070 346 aa, chain - ## HITS:1 COG:lin1512 KEGG:ns NR:ns ## COG: lin1512 COG1420 # Protein_GI_number: 16800580 # Func_class: K Transcription # Function: Transcriptional regulator of heat shock gene # Organism: Listeria innocua # 1 341 1 341 345 250 38.0 4e-66 MLTDRELLILEEIVQEYTENGKPIGSKTVMNNLPIKVSSATIRNDMAKLEDLGLIEKTHS SSGRVPSLMGYRYYVDHLLRPEEVDQTEALQIQRGLATHFQEVDDIVRTSAEMLSNLTHY TALTLKPEQKGATLDGFRMVPLGGNQVMLILVSSNGDVTSQQFSIPHEMNGETLERVVRI MNDRLVGKTLSQVYYHLRTDIPQVVEKYLQSDAGVLDVFQDIVTRSTRDRYFVGGKLNVL NFSKNVDVNSLRGLLTLFNENEQINGLLGNKRSDLDVKIGDELSNALLKDFSLITATYDV GSRGKGLIAILGPTSMQYSKTLGLINTFRYQLSHRMLQYYKHLDDS >gi|269838503|gb|ACXB01000008.1| GENE 8 6705 - 7652 593 315 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762565|ref|ZP_02169630.1| ribosomal protein S2 [Bacillus selenitireducens MLS10] # 1 315 1 315 317 233 40 4e-60 MQIIKIHHPYDKKMIPEEKVVLALGFFDGMHRGHQAVIQKAREIANAKGLALAAMTFDHH ASVVFPKPQHRFSALSYLTSVSRKAELMEATGVDILYVVNFTSAFGSLTPQEFVDQYMVG LNAEVVVAGFDYTFGPVATANMDTLPEIAQHRFEVVKVPKIIAQGQKIGSTAIRNAVADG EIDEANRYLGYPFETNGLVVHGEARGRTLGFPTANIVSNPNQITPGIGIYVVEIKIADKW YQGMASVGRNVVFGDGRPVTTEINILDFNQEIYGETVRVKWHHRLRGEVKFASVDALIAQ LHQDEADTRAFFKKR >gi|269838503|gb|ACXB01000008.1| GENE 9 7653 - 8555 871 300 aa, chain - ## HITS:1 COG:BH2410 KEGG:ns NR:ns ## COG: BH2410 COG0130 # Protein_GI_number: 15614973 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridine synthase # Organism: Bacillus halodurans # 1 297 3 299 304 263 47.0 2e-70 MDGIIPINKERGMTSHDVVAKVRGILRTKKVGHSGTLDPSVDGVLPVCVGRATKVVDYLM RFGKTYQGSITLGLATTTEDLDGEVVERQPLSKPLTDAQIDAALKQMTGELTQIPPMYSA VKVNGRKLYEYARAGETVERPKRKIQVYQFKQIRPTEFDEEKGEQTIYFEVQCGKGTYVR TLAVDFGRQFGLPAVMSDLTRTSSGGFELKECVTLAELEQARDEDRVESDVLHPIDHALA KFEAIEITDSEWQLVQNGGFLKRALTEPIVAVKYKGKIQALYQYDESRQVYRPEKMLLVR >gi|269838503|gb|ACXB01000008.1| GENE 10 8567 - 8755 83 62 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTKLKEQSWTGTFPASKQLMGTIPGRMVALFKLVGDTDWDEHFVFHGIYCKILKKSKFAR EM >gi|269838503|gb|ACXB01000008.1| GENE 11 8748 - 9098 448 116 aa, chain - ## HITS:1 COG:SPy1719 KEGG:ns NR:ns ## COG: SPy1719 COG0858 # Protein_GI_number: 15675570 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome-binding factor A # Organism: Streptococcus pyogenes M1 GAS # 5 114 6 115 118 124 58.0 6e-29 MARQYRADRLSQEIEKEVSDILRRRVRDPRVQGVTITGVDVTGDLQQAKIYYSILSDKAS DDEKTRKGLEKASGLIRKELGSRLSIYKTPELIFERDHSVQYGEKIDQLINKLNRD >gi|269838503|gb|ACXB01000008.1| GENE 12 9115 - 11748 2703 877 aa, chain - ## HITS:1 COG:SPy1721 KEGG:ns NR:ns ## COG: SPy1721 COG0532 # Protein_GI_number: 15675571 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation initiation factor 2 (IF-2; GTPase) # Organism: Streptococcus pyogenes M1 GAS # 1 874 1 950 953 764 50.0 0 MGKKRIYELAKEINVSSKEIIEKAQADGLDIKNHMSTLDADSEKHLREAFKKNAGSEKPA EKRTPKFRSSKTGKTVVKKSGQPNKNGAKGIQRLKSNTNDNKNTDHTKEEKRQSNNRTRD NRNHNQNHNQNRNRNQNNGQNRPKREQSERQDKQKAIRASVAEAARMAAQANREIAHEKP QPAHKKHVRNNAERPQEHKRSNQNHSNTTPQTNKRPVVAEAVAAPEASKERTNNNKNYGS KNGNRFNNNRGNNRPFNKENRKNKKKNRKAKRDGRLKESQKKVVTARKEKPLPKVLEYSE GINVAEIAKKIHREPAEIIKKLFMMGVMVNQNQSLDNDTVELLAADYGIEAQQKVEVDIS DIDKMFEDEQKNTDHLENRPPVVTIMGHVDHGKTTLLDKLRHSHITEGEAGGITQGIGAY QLKHDDKLITFLDTPGHAAFTEMRARGADVTDITILVVAADDGVMPQTIEAINHAKAAEV PIIVAVNKIDKPGANPNHVMEQLTEYGLIPESWGGDTIFVEISAKFGKNLDELLDMILLQ AEVLELKANPEQNAAGSVIEAQLDPGKGSIATVLVQQGTMHVGDPVVIGNTFGRVRTMTN EHGRRVKEATPSTPVEITGLNDVPEAGDRFVVFDDEKSARAAGEERAKRAQMEERKRNNH VTLDNLFDSLKEGEMKKVDIIIKADVQGSVEALADSLQKIDVEGVRVNIIHKAVGAINES DVTLAAASNAIIIGFNVRPTAQAKQMADSEDVEIRLHQVIYKAIEEVESAMKGMLEPVYE EEVIGQVEVRETYKVSRIGTIAGGYVTEGFITRDAGVRLIRDGVVIYDGKLGSLRRFKDD VKEVKRGFDLGLTIEKYNDIKVGDVIEAYRMKEVPVE >gi|269838503|gb|ACXB01000008.1| GENE 13 11761 - 12060 194 99 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|167465396|ref|ZP_02330485.1| L7Ae family ribosomal protein [Paenibacillus larvae subsp. larvae BRL-230010] # 1 91 1 92 108 79 44 7e-14 MKPAVQQYLGLMRRSGNLTTGQELVLNLIRSKKARLVLLAEDIGESSRKRIIDKCHFYEI PVVVAGSKAEISAAIGQSRSVVATTNKGFAEGFLKRLNE >gi|269838503|gb|ACXB01000008.1| GENE 14 12060 - 12356 386 98 aa, chain - ## HITS:1 COG:L175136 KEGG:ns NR:ns ## COG: L175136 COG2740 # Protein_GI_number: 15672747 # Func_class: K Transcription # Function: Predicted nucleic-acid-binding protein implicated in transcription termination # Organism: Lactococcus lactis # 1 94 1 94 108 110 59.0 8e-25 MKTRKIPMRKDIVTNQMFPKRELVRVVKNKENEVSIDPTGKAAGRGAYIGLDVEIAKKAK QKRIFDRTFQVKIDDQFYDDLIAYVDHQQARKELFGDK >gi|269838503|gb|ACXB01000008.1| GENE 15 12378 - 13544 750 388 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|17988250|ref|NP_540884.1| transcription elongation factor NusA [Brucella melitensis 16M] # 4 346 9 350 537 293 46 2e-78 MSKEMVTALANLEKEKGIKQSVVIEALEAALVSAYKRNYGQAQNVEVEFNERKGDIHVYA VKKVVEEVEDDQLQVSLADALQINRAYELDDEIRFEVTPKNFGRIAAQTAKQVIMQRVRE AEREVIYEKYSQYLDEMVTGEVVRRDNRYVYVDLGGVEAVMSKQDQIPGEQYEPHDHIKV YVTKVEYSGRGPQIFVSRSHEGLLKRLFEQEIPEIYDGTVEIMSVAREAGDRAKVAVRSN NPDIDAVGTCVGPRGQRIQTIVNELHGENMDVIEWEDDDAEFISNALNPAEVIDVLFNEE EENSCIVIVPDYQLSLAIGKRGQNARLAAKLTNYKIDIKSETDAAEFVEEDDDEEVADSA TEIESSADESTVDENVLESESNDDSDEE >gi|269838503|gb|ACXB01000008.1| GENE 16 13558 - 14034 319 158 aa, chain - ## HITS:1 COG:SP0552 KEGG:ns NR:ns ## COG: SP0552 COG0779 # Protein_GI_number: 15900464 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 3 158 5 159 159 150 48.0 6e-37 MSSNVVEKITELARPVIESHDFQLVEVEFVKEGQGWFLRFYIDKVGGINIEECAMVSDEL SELLDQQDPDPIPQAYFLEVSSPGAERPLKTKEDLAAAVGEYIHISLYASINKQKVFEGY LKSFENDELVLDYLDKTRHKELKVAYNQVAFARLAIKI >gi|269838503|gb|ACXB01000008.1| GENE 17 14156 - 18466 3550 1436 aa, chain - ## HITS:1 COG:lin1357 KEGG:ns NR:ns ## COG: lin1357 COG2176 # Protein_GI_number: 16800425 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit (gram-positive type) # Organism: Listeria innocua # 5 1436 8 1444 1444 1748 59.0 0 MSLSENEQFKILLKQIDWSAPPAVGEGLIKNLTVHANSKRWFFNFEWDDILPYDQFAEFD ERLKHTFKPIANVDYQISTRANTITKEQVAGYWDWIIKHSGIQSSLLQVLCDKAVPDFQD QVLTVKVDNEISQNLLSEEALRTIGQKYQQAGFPQFKIQVAIDNDGAEQRLAQYHEEKIK RDKEIVQKATEAIKKAEKKKATEKKAAPQFNGKVQIGKPISDQEQVTQLRDINQEERSVT IEGYIFDVEVKTLRSERQLLIFKVTDYTSSITIKKFSRNESDEQLFAAVKQGLWVRVRGS VQEDSFMKDLTMNAYDVTQISHAEREDTADEKRVELHLHTNMSTMDATNSISDFVSQAAK WGHPAIAVTDHAGLQAFPEAYAAGKKSGVKPLFGVEANLVDDGVPIAYNSAHRTLKGGKY VIFDVETTGLSAIYDKVIELSAVKMENGNVIDEFEEFIDPGFPLSETTINLTSITNEMVR GSLSEKEVFTKFREFYEDAIIVGHNVTFDIGFMNTGYLRHGMEEIKNPIIDTLTLARFLY PTLKGYRLNTLAKKFNVALEHHHRAIYDAETTGHLCYLFLKDAEERYGIEYHDQLNDHMT ENDAYKHARPNHAVLIAKTQAGLKNLFKLVSLSNVKYFYRVPRIPRSELERLREGIIVGS ACSSGEVFTAMAQKGYVEARDRAKFYDYLEVMPKPVYQPLIDQEIVSDTNKLEEIIGNIV KLGKDLDIPVVATGDVHYLNPQDAIYRKILINSQGGANPLNRTELPDVHFRTTDEMLEAF RFLGEETAHQIVVENPNQIADSIDDISPVKDKLYTPKMPGAEDRIKQLAMDQAHALYGKE LPEIVSERLDKELTSIIGNGFSVIYLIAQRLVHKSNKDGYLVGSRGSVGSSFVATMSGIT EVNPLPPHYRCPNCQYSHFYTKGEYGSGYDLPDKKCPECGTLMIGDGQDIPFETFLGFKG DKVPDIDLNFSGDYQPIAHNYMQVLFGKNNVFRAGTIGTVADKTAYGYVKAYERDTNQHL RGAEIERLAKGATGVKRTTGQHPAGILIVPDYMDIYDFSPIQYPADDQTAAWETTHFDFH SIHDNILKMDILGHDDPTMIRKLQDLSGIDPQTIPTDDPGVMKIFSGPEVLGVTEEQIKS KTGTLGIPEFGTRFVRGMLEETHPTTYSELLQISGLSHGTDVWLGNAEELIKAGTITLKD VIGCRDNIMMDLIHYGLDSQSSFKIMESVRKGKGIPEGYEEKMRAANVPDWYIESCGKIK YMFPRAHASAYVLMALRIAYFKVYYPLVYYAAYFTVRADDFDIVAMSRGKESLKNRMQEI NDKGNEASAKEKNLLTVLELANEMVERGFNFKMIDLEKSDAEEWLIDGDSLIAPFNALPG LGLNVAKQIVAARADKPFLSKEDLAKRGHVSQTLIDFMTENNVLAGLPDENQLSLF >gi|269838503|gb|ACXB01000008.1| GENE 18 18602 - 20317 1584 571 aa, chain - ## HITS:1 COG:lin1356 KEGG:ns NR:ns ## COG: lin1356 COG0442 # Protein_GI_number: 16800424 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Prolyl-tRNA synthetase # Organism: Listeria innocua # 1 567 1 565 568 672 56.0 0 MKQSKILIPTVKEVPNDAEVLSHKMMLRAGYIRQISAGMYAYLPMAYKVMEKIKRIIREE MTAIDAVEMLTPAVLPAELWKKSGRYETYGQELYKFKNRHDRDFILGPTHEETMTTLIRD EVKSYKKLPLTLYQIQMKYRDEDRPRYGLLRGREFLMSDAYSFHADEETLDESFRAFEKA YQNIFDRCGLKYREIVGDAGAMGGHDSKEFSAIASIGEDTIAYSEESDYAANLEMASSVY EDLQMHENPAEIEKVATGDAHSIDEVAKELGVDDGRLIKTMVLMADDQPVLALLRGNDQL NEVKLTNLLHVDELREATEEEVTRLTGAHFGNLGPVFDKRPEDIQIVADKYVEQMVNSVV GANEDGYHYTNVNVGRDFDVDQFADIRTVKEGELAPDGKGKLKFTKGIEIGHIFKIGTKY SKALDATVLDQNGRAIPVIMGCYGIGVSRLLSAVSEQLADENGLVWPKNIAPFDVHVIPV NAKNDEQMQVADQINTELVAAGYDVLIDDRKERAGVKFADSDLIGIPLRVTVGKKASEGI VEVKLRQTGETVEVKLAELKNTVEILLNQAQ >gi|269838503|gb|ACXB01000008.1| GENE 19 20346 - 20789 498 147 aa, chain - ## HITS:1 COG:SPy1963 KEGG:ns NR:ns ## COG: SPy1963 COG0750 # Protein_GI_number: 15675761 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted membrane-associated Zn-dependent proteases 1 # Organism: Streptococcus pyogenes M1 GAS # 5 147 277 419 419 146 49.0 2e-35 MVKKKVGMIGIQSSMTTNLGSRIMYGFTGTWQMTKALFSALAQMLHGFSLNDLGGPVAIY ATTSKATQQGFNAVLYILGFLSLNLGIVNLLPIPALDGGKILLNLIEVVRRKPMKMETEN MITLVGFGFLMLLMLLVTWNDIQRYFF >gi|269838503|gb|ACXB01000008.1| GENE 20 20737 - 21609 701 290 aa, chain - ## HITS:1 COG:SPy1963 KEGG:ns NR:ns ## COG: SPy1963 COG0750 # Protein_GI_number: 15675761 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted membrane-associated Zn-dependent proteases 1 # Organism: Streptococcus pyogenes M1 GAS # 15 270 14 273 419 251 50.0 1e-66 MITTVITFLIVFCILVIVHEYGHFLAAKKSGILVREFSVGMGPKIVDLKRRGTTFTLRIL PIGGYVRMAGLDEEDEELKAGQPVVLTTNSAGVVTTINTSEKFRSAVGVPLIVTKFDLQD ALFIEGYENGDEGAAKRFAVDHDATIVEKDGTEVRIAPRDVQFQSASVWRRLLTNFAGPF NNFILAIVVFALMGILQGAVPSNSNQVQVIDNGVAQKAGVRNNDRIVAVDGQKTQNWSAI SKAVSSHPKQSITLKLQKNGKTRSVRVTPKVVNNGQKKGRNDWDSIINDH >gi|269838503|gb|ACXB01000008.1| GENE 21 21630 - 22415 805 261 aa, chain - ## HITS:1 COG:lin1353 KEGG:ns NR:ns ## COG: lin1353 COG0575 # Protein_GI_number: 16800421 # Func_class: I Lipid transport and metabolism # Function: CDP-diglyceride synthetase # Organism: Listeria innocua # 1 261 1 262 262 206 46.0 4e-53 MKQRVITAVVALIIFIPIILLGGPFIEIAALVLAGVAMSEVLIMKKILLVSPEAILSILG TLFLVAPKTWLHSLPSQINTSAIFMVFAIALMIRTVFSKNRFNFDDAGILTLTMLYIGVG FNLFVQARTIGLGMILYLLLTVWCTDSGAYLIGRKLGKRKLAPQISPNKTWEGSIGGTVV AVIVGVIFSLLGAINHGVVATVLFSFVLSIAGQMGDLIESALKRFYGVKDSGKILPGHGG ILDRFDSLLLVLPMAYLFGLL >gi|269838503|gb|ACXB01000008.1| GENE 22 22426 - 23175 832 249 aa, chain - ## HITS:1 COG:lin1352 KEGG:ns NR:ns ## COG: lin1352 COG0020 # Protein_GI_number: 16800420 # Func_class: I Lipid transport and metabolism # Function: Undecaprenyl pyrophosphate synthase # Organism: Listeria innocua # 15 247 23 252 252 294 59.0 1e-79 MKANQQSKITLNENIPNHVAIIMDGNGRWAQRRFMPRVAGHKRGMEVVKTITKAASSLGV KVLTLYAFSTENWKRPQDEVSFLMKLPITFFDTFVPELIEQGVRVKVTGNIEGLPQATQD AVNRAISDTAHGTKMILNFALNYGSRDELTQMTRSIAQQVANGEIVPEAIDEQLIARNLQ TSFLGDLADPDLLIRTSGEERISNFLLWQIAYSELVFTDTLWPDFNEQTFMEMIKEYQKR DRRFGAIKK >gi|269838503|gb|ACXB01000008.1| GENE 23 23307 - 23867 802 186 aa, chain - ## HITS:1 COG:lin1351 KEGG:ns NR:ns ## COG: lin1351 COG0233 # Protein_GI_number: 16800419 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome recycling factor # Organism: Listeria innocua # 3 185 2 184 185 196 61.0 2e-50 MANNEILKTAEEKMHKAHQALERDLGSIRAGRANASLLDRVTVDYYGAPTPLNQMASISI PEPRVLLITPYDKSVLNDIEQALLVADLGINPANDGSAIRLVIPQLTEETRKELAKDVKA EGEKGKVAIRNVRREAMEALKKAHKNGDYNDDEFHDLEKQAQDITDKAIKKVEEIVANKE KEVLEG >gi|269838503|gb|ACXB01000008.1| GENE 24 23869 - 24591 762 240 aa, chain - ## HITS:1 COG:SP0944 KEGG:ns NR:ns ## COG: SP0944 COG0528 # Protein_GI_number: 15900823 # Func_class: F Nucleotide transport and metabolism # Function: Uridylate kinase # Organism: Streptococcus pneumoniae TIGR4 # 1 237 3 239 247 331 70.0 9e-91 MSEVKYKRVIMKLSGEALAGEKGTGINPPVIQKVAEELRDVHDLGVQIAIVVGGGNMWRG ETGEELGMERVQADYIGMLGTVMNALALQDSLESLGVPTRVQTSIEMRQIAEPYIRRKAV RHLEKNRIVIFAAGTGSPYFSTDTTSALRAAEIGAEAILMAKNGVDGIYSADPNVDPNAV KFESLTHMDIIDKGLHVMDTTASSLSMENDIPLVVFNLNQPGNIKKVVAGENIGTTVRGE >gi|269838503|gb|ACXB01000008.1| GENE 25 24750 - 25628 567 292 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42631241|ref|ZP_00156779.1| COG0264: Translation elongation factor Ts [Haemophilus influenzae R2866] # 1 291 1 280 283 223 45 4e-57 MASISAKQVKELRDKIGVGMMDAKKALVASDGDMDKAVDFLREKGIAKAAKKSDRVAAEG LADVEMHDNTAAIVEVNSETDFVASNDRFIDLVKEIASQVALEKPASVEDALKLKSPKGT LNDDIIEATQVIGEKISLRRFATLEKSENEHFGAYLHMGGKIAALVLLEGADEETAKDVA MHVAAINPKYVNRDEVPSDVLDHEREVLTKEAEGEGKPANIIEKMVEGRLNKFLAEVSLD DQEFVKDPDQTVAKYVASKGGKVKSFIRYEVGEGIEKQTVDFAEEVRKEMGQ >gi|269838503|gb|ACXB01000008.1| GENE 26 25744 - 26529 1330 261 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|1350975|sp|P49668|RS2_PEDAC RecName: Full=30S ribosomal protein S2 # 1 261 1 261 261 516 99 1e-145 MSVISMKQLLEAGVHFGHQTRRWNPKMKPFIFTERNGIYIIDLQKTVKLIDNAYNFVKDV AANDGVVLFVGTKKQAQTAIEEEAKRAGQFYVNHRWLGGTLTNWNTIQKRIKRLKDLKKM EEDGTFDRLPKKEVALLNKQKDKLEKFLGGIEDMPHIPDVLFVVDPRKEQIAIKEAQKLN IPVVAMVDTNTDPDQVDVIIPSNDDAIRAIRLITSKMADAVVEGRQGEDDEAVQQEEVAE GVSKDSLEDLKKTVEEGSNEE >gi|269838503|gb|ACXB01000008.1| GENE 27 26692 - 27687 1134 331 aa, chain - ## HITS:1 COG:SA2346 KEGG:ns NR:ns ## COG: SA2346 COG1052 # Protein_GI_number: 15928138 # Func_class: C Energy production and conversion; H Coenzyme transport and metabolism; R General function prediction only # Function: Lactate dehydrogenase and related dehydrogenases # Organism: Staphylococcus aureus N315 # 2 328 3 331 332 246 38.0 4e-65 MKIIAYGIRDDEKPYLDEWVTKNHIEVKAVPDLLDSSNIDLAKDYDGVVAYQQKPYTADL FDKMHEFGIHAFSLRNVGVDNVPTDALKKNDIKISNVPAYSPRAIAELSVTQLLALLRKI PEFEYKMAHGDYRWEPDIGLELNQMTVGVIGTGRIGRAAIDIFKGFGAKVIAYDVFRNPA LEKEGMYVDTLEELYQQANVITLHVPALKDNYHMLDEKAFGQMQDGTFILNFARGTLIDT PALLKALDSGKVAGAALDTYENEVGIFDVDHGDQPIDDPVFNDLMSRRNVMITPHAAFYT RPAVKNMVQIALDNNRDLIEKNSSKNEVKFD >gi|269838503|gb|ACXB01000008.1| GENE 28 27731 - 28027 304 98 aa, chain - ## HITS:1 COG:L1889726 KEGG:ns NR:ns ## COG: L1889726 COG2827 # Protein_GI_number: 15673803 # Func_class: L Replication, recombination and repair # Function: Predicted endonuclease containing a URI domain # Organism: Lactococcus lactis # 7 89 2 83 104 83 52.0 8e-17 MEAPSENGFYFYVLWCADQTLYTGYTVNLKQRVARHNSGQGAKYTRVPKRRPVQLLYYES FENQHDAMSAEYFFKKQSRKEKLKYLKNNGVIVTTFSH >gi|269838503|gb|ACXB01000008.1| GENE 29 28011 - 28763 498 250 aa, chain - ## HITS:1 COG:SP1536 KEGG:ns NR:ns ## COG: SP1536 COG4123 # Protein_GI_number: 15901380 # Func_class: R General function prediction only # Function: Predicted O-methyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 2 248 4 249 249 233 50.0 2e-61 MEVKLNADERIDQLYRDNIQIIQSPSVFSFSLDAVLLANFAEVKQSSKAQIVDLCAGNGA VGLFLSKKTNGHVTMVEIQSRLAEMAERSILLNDLGERYRVLNLPLADSLGTIKTDSVDS IVCNPPYFPNHPDSKKNPNQFLAIARHEITTSLNEILETSQKMLKMNGKLFMVHRPDRLP EIINDFTQNRLAPKRIQFVHSHEGDEANMVLIEAIKDGRPNGVRILPPIITYDGLEYSPT VKEMLYGSTK >gi|269838503|gb|ACXB01000008.1| GENE 30 28840 - 29487 337 215 aa, chain + ## HITS:1 COG:SP1624 KEGG:ns NR:ns ## COG: SP1624 COG0204 # Protein_GI_number: 15901460 # Func_class: I Lipid transport and metabolism # Function: 1-acyl-sn-glycerol-3-phosphate acyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 194 1 196 249 202 50.0 3e-52 MLYTFIKHLVSGLLTLINGRPQFHHKDRLPSGSYVLVAPHRTWLDPVLYALAAYPKRFSF MAKKELFQNRFLKWLITKLNAFPVDRQNPGPSAIKVPVKILKKGELSTIIFPSGTRHSQE LKNGAFVIAKLANVPIVPAVYQGPLSFKALFSRRKVQINFGEPIVIDRKTRMNDENLAQL EKDLNAAFAALDRELDPTFQYVDMAEPSHTKKASK >gi|269838503|gb|ACXB01000008.1| GENE 31 29499 - 29720 254 73 aa, chain - ## HITS:1 COG:lin1344 KEGG:ns NR:ns ## COG: lin1344 COG3763 # Protein_GI_number: 16800412 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 5 67 3 65 79 66 69.0 1e-11 MSTGIWIMIVIIAVLVGAIGGFFFARRYMENYLKNNPPINEDMLRTMMLQMGQKPSQKKL HQMMTAMKNQSKK >gi|269838503|gb|ACXB01000008.1| GENE 32 29790 - 30038 368 82 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0871 NR:ns ## KEGG: PEPE_0871 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 82 1 82 82 81 89.0 7e-15 MADQEMQKLIKRINELAKKAKEEGLTELETIERKELRQKYLKRFRESFRSQIEMMKIFDK DGKEVTPEKVKKVQRKKGLRDD >gi|269838503|gb|ACXB01000008.1| GENE 33 30145 - 30774 526 209 aa, chain + ## HITS:1 COG:lin1340 KEGG:ns NR:ns ## COG: lin1340 COG1974 # Protein_GI_number: 16800408 # Func_class: K Transcription; T Signal transduction mechanisms # Function: SOS-response transcriptional repressors (RecA-mediated autopeptidases) # Organism: Listeria innocua # 5 205 3 201 204 238 59.0 6e-63 MIKNLSTKQLNVLEYIYQTVQTQGYPPTVREIGKAIGLSSTSTVHGHIDRLQKNGYLEKD PTKPRALEITAQGLEALGIQENGEQIPVLGVVTAGEPILAVEEATDFFPVPPEFKNESSD LFMLTIRGESMINAGILSGDQVIVRKQSTADNGEIVIAMTDENEATCKRFFKETDHIRLQ PENDTMSPIILDNVTILGKVVGLFRSDIY >gi|269838503|gb|ACXB01000008.1| GENE 34 30855 - 31061 121 68 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLYVLVLASIALILSLFKLHSSIRSRESIFGAIILFIIPLALVIFSGNQVIHEKPSTAAS TASSHLAD >gi|269838503|gb|ACXB01000008.1| GENE 35 31009 - 31464 464 151 aa, chain + ## HITS:1 COG:no KEGG:PEPE_0869 NR:ns ## KEGG: PEPE_0869 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 20 145 69 194 199 93 42.0 3e-18 MKNRLQLLAQLVHIWLTKKSKEASIKDDKFEKMNSDSQAASQQAAKERNITASLKKNLKS LGDLTFNADQKVFVVTPTDANSKKAFSAWVKDSRTIDKDSYAGLKKQFTGLSKSLKKELG SGYTVKLLQPDSNRALLVVKDGKIVEDALAS >gi|269838503|gb|ACXB01000008.1| GENE 36 31566 - 32735 1253 389 aa, chain - ## HITS:1 COG:lin1454 KEGG:ns NR:ns ## COG: lin1454 COG3425 # Protein_GI_number: 16800522 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxy-3-methylglutaryl CoA synthase # Organism: Listeria innocua # 1 387 1 388 388 382 49.0 1e-106 MNIGIDKISFFTSDLYLPMDDLAKARNEDPNKYLIGIGQSKQAVIRNSQDAVTLAANAAW QILDEKERQSIDLILFGTESGVDNSKSAAVYLQSLLEINAQASGVELKQACFGLTAGIQL AMGHIALHPQSRILLVGADIARYGIKTAGEPTQGGGAVAMIMSANPRILKINPESAHLTK DIMDFWRPLYRSEALVDGHYSSQEFIDFFQSTFQQYSAKTGQGLNDFAALIFHLPYTKMG LKALRSVLEEAPDDQIAEGLLARFEDSRQLNREVGNLYTGSLYLSLLSLLQARSLREGDQ IGLFSYGSGAEGEFYTGEVVQGYERMLDTSVSEQLRQRKPVSVTEYEEIYRSFMAAQPSD FVTDYQNDPARFALKGQKDQQRQYVERKD >gi|269838503|gb|ACXB01000008.1| GENE 37 33433 - 34122 677 229 aa, chain + ## HITS:1 COG:no KEGG:LACR_2273 NR:ns ## KEGG: LACR_2273 # Name: not_defined # Def: hypothetical protein # Organism: L.lactis_SK11 # Pathway: not_defined # 111 229 308 436 436 80 43.0 4e-14 MKKESTGFWGCVGIVILFFLLIKFWYIIIIGLGIWAIYHYREPIMDFYHRKPLIALVIGF FSVILLITGIAIAETPSSDTNSSKTEKVAKSSDDSDENIDESDEDDFDGDVDDSSSDNDV DDESDNLEETSSDEDYDTDEAISKSDTDSVTSSDDNESSNEVSSSSIEEVSSTQEGDWTV AGPGMVFVSDSNLYYSRVKNPGNFQYVSQQDADSAGAHRAPRGNEYARP >gi|269838503|gb|ACXB01000008.1| GENE 38 34389 - 35147 797 252 aa, chain - ## HITS:1 COG:L161132 KEGG:ns NR:ns ## COG: L161132 COG0623 # Protein_GI_number: 15672548 # Func_class: I Lipid transport and metabolism # Function: Enoyl-[acyl-carrier-protein] reductase (NADH) # Organism: Lactococcus lactis # 5 251 3 249 250 278 58.0 7e-75 MEGILSGKTIIVMGVANKNSIAWGCTQAIINQGGRVILTYQNDRIKKSLSKFVAPDVPLV ECDVAEDENIEAAFDKIKAEYGEVDGIIHAIAFADKETLEGGVINTKKAGYNLAQDVSAY SLIAVSRYGAKIMKNSGSIVTLTYFGSTRAIPNYNMMGIAKAALESSVRYLASDLGEQHI RVNAISAGAIKTLAVTGIKKHRDLLKESQSRTVDGENVTTDEVGNVAAFLVSDLATGVTG DVIYVDKGVHLV >gi|269838503|gb|ACXB01000008.1| GENE 39 35164 - 35931 634 255 aa, chain - ## HITS:1 COG:L0190 KEGG:ns NR:ns ## COG: L0190 COG0825 # Protein_GI_number: 15672762 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA carboxylase alpha subunit # Organism: Lactococcus lactis # 3 255 15 260 260 269 54.0 4e-72 MTKTAYETVMAARAKEKVATEDLINNIFTDFTEFHGDRQLSDDPAIIGGIARLNGLPVTV IGTQKGKNTAENIERHFGTVEPEGYRKAIRLMKQAEKFKRPVITFVNTPGAYPGMDAEYH GQGSAIAQCLMVGMELRVPYISVIVGEGGSGGALALATADRVWMFENSIYSVLSPEGYAS IVWKDAKRVADAAEELKLTPEILLTEGIIDKIIPEVVDQESTKVLKNMLVSEVESLRQFS ADELVEQRHERFSKF >gi|269838503|gb|ACXB01000008.1| GENE 40 35948 - 36772 770 274 aa, chain - ## HITS:1 COG:CAC3569 KEGG:ns NR:ns ## COG: CAC3569 COG0777 # Protein_GI_number: 15896803 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA carboxylase beta subunit # Organism: Clostridium acetobutylicum # 14 273 23 285 285 283 53.0 3e-76 MKSKFSLPTQEEIVKRLKKIPEGLWRECPECHEKYYYRHAGSLEVCPKCGYGMRIGARKR IKMVCDEFEEWDKALTTDPQNADPKYRQKLANGIKQTRVNESVLTGKGKIGNFSVAIAVM DSRFIMGSLGQVTGQKIAHLFQKATQERLPVIIFTASGGARMQDGIYSLMQMAKVSDEVA RHSAEGLLYIAVLTDPTTGGVTASYAMQADIILAEPKTLIGFAGRRVIEQTINQKPPKDF QKAETLLRNGFLDAIVERKDLKSYLNNLLSLHAE >gi|269838503|gb|ACXB01000008.1| GENE 41 36762 - 38129 1400 455 aa, chain - ## HITS:1 COG:SP0425 KEGG:ns NR:ns ## COG: SP0425 COG0439 # Protein_GI_number: 15900344 # Func_class: I Lipid transport and metabolism # Function: Biotin carboxylase # Organism: Streptococcus pneumoniae TIGR4 # 1 454 1 455 455 488 54.0 1e-137 MFQKVLVANRGEIAVQIIRSLHELDIQAVAVYSTADENSLFVRLADEAVCIGGPQPAESY LNTFNIVNAAILTGCDAIHPGYGFLSENAEFARLCEESNLKFIGPSYQTIELMGNKSRAR ETMISANVPVIPGSNGMVRDLENAMVVAEQIGYPVMLKAADGGGGKGIRRINSPDELKKA YQAAQREAQTSFGNADLYLEKIIENAKHIEMQVIADQYGHYVFLPERDCSLQRTNQKVIE ETPCAVISHTERETLGEIVVRAAKAIKYYNTGTIEFLMDQDHHFYFMEMNTRLQVEHTVT EEVTGIELIKEQIKIAEGQKLSFSQFDVNILGHAIECRINAEDPSNNFMPSAGKIDHLFL PVGTMGVRIDSGITQGSLIPPFYDSMIAKMIVKMPTRQEAIVKMRRVLKEFEIAGVKCNK TFLEALLVDKGFEKAKFSTKYIENNFLKEWLNNEK >gi|269838503|gb|ACXB01000008.1| GENE 42 38146 - 38556 394 136 aa, chain - ## HITS:1 COG:BH3735 KEGG:ns NR:ns ## COG: BH3735 COG0764 # Protein_GI_number: 15616297 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases # Organism: Bacillus halodurans # 3 135 6 139 140 112 48.0 2e-25 MVNVQDIIPQRPPFQLIDQLINLEDGKKAVAQKQVTINEWFFGHQSELFMPEPLLIEALA QTGACALLSAPEFAGKNAFFGGIKPAIFNQRVVPGNELTLTVELTKLKRQIGTGHGVIEN ERHEVVCEADLTFIVG >gi|269838503|gb|ACXB01000008.1| GENE 43 38569 - 38994 613 141 aa, chain - ## HITS:1 COG:slr0435 KEGG:ns NR:ns ## COG: slr0435 COG0511 # Protein_GI_number: 16331454 # Func_class: I Lipid transport and metabolism # Function: Biotin carboxyl carrier protein # Organism: Synechocystis # 5 139 7 153 154 85 36.0 3e-17 MEEIDLDKLLTKLDQSSFTSFEIHDGDFNLKVKKEAVAVNQPVMQNNPPVAEAAPSVPES EPLAEIKAPFVGVVYFAPAEGEDPYIQEGSTVKKGDTVALIEAMKMFNEVHSPIEGEVVE ILVDNGSMVEYDQPIARIREK >gi|269838503|gb|ACXB01000008.1| GENE 44 38999 - 40225 1394 408 aa, chain - ## HITS:1 COG:L0186 KEGG:ns NR:ns ## COG: L0186 COG0304 # Protein_GI_number: 15672757 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: 3-oxoacyl-(acyl-carrier-protein) synthase # Organism: Lactococcus lactis # 1 408 1 405 409 387 54.0 1e-107 MTRRVVVTGMGALTPLGNSRDAFIEGLNESKVGIDQITHFDAEPTGITVAGEVKDFNATE RLERKIAKRMDPFSQYALYTAVEAMEQADFKDGEVDPEQMGVIYGSGIGGLTTIQEQVIK MNTKGPKRVSPLFVTNSITNMAAGNISMYFNAKNTSQAIVTACASANNAIGNAFHHIKNG YADVMITGGAESSINEIGIAGFAALTALSTATDRLRASIPFDKERNGFVMGEGAATLVLE EYEHAKARGAKILAEIVGYGMTSDAFHMTQPDPDGRGAIRAMEMALQEGGLTPADVDYIN AHGTSTHANDSAESKAIAKVFADNDHYQVSSTKSMTGHLLGAAGAIEAVATIAALQNDVM PVNVGLQVKDPEVNIPLVTEDSRRTKVHAAISNSFGFGGHNAVLAFKR >gi|269838503|gb|ACXB01000008.1| GENE 45 40241 - 40969 219 242 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 3 238 1 238 242 89 28 9e-17 MDIKDKVAVVTGGTKGIGLAIAKDLAQQGAKVFITARRAVEDEALQNELNDLGITFKNLD IRADEAVGTLLNELNEEQGHVDIVINNAGITRDKLLSRMSVEDFEEVIATNLVGTFSVTK YAMKIMQKQRSGNIVNISSISGTHGNVGQANYSASKAGIVGLTKTTAREGLLRNIRCNAI APGMIETAMTGKLSDKVRAKTEEMIPMHRFGQPEEIAMAVSFLLKNDYITGQVLTVDGGL TL >gi|269838503|gb|ACXB01000008.1| GENE 46 41054 - 41998 861 314 aa, chain - ## HITS:1 COG:SP0420 KEGG:ns NR:ns ## COG: SP0420 COG0331 # Protein_GI_number: 15900339 # Func_class: I Lipid transport and metabolism # Function: (acyl-carrier-protein) S-malonyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 286 1 291 306 202 39.0 7e-52 MVKAAYLFSGQGQQFAGMGQDFYKTEPAYRALVDEASQILDQDFADPAVMDDPVNTQLAI VIFSLGVERILRQEKLRAEKFVGLSLGEYSALLAAGSFSLADGLAVIGDRARYMSEAGKQ NPGQMVAVLNAEPSVIDEALADAREVGDVFPANYNTPKQTVFGGNAEGIERFSAALKAAG VKRVVPIKMPVASHTPYMMPASARLAERLANVPVQEPQIPVISNTLKAPFTVSNLKETLA KQLTHPTYFTDCLNSLNVDELDCLIEVGPGKALSGFAKKTLKKAELPIFNVDRVENLNKL REFLVTKQAKEPVI >gi|269838503|gb|ACXB01000008.1| GENE 47 42025 - 42261 431 78 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0856 NR:ns ## KEGG: PEPE_0856 # Name: not_defined # Def: acyl carrier protein # Organism: P.pentosaceus # Pathway: not_defined # 1 78 1 78 79 74 88.0 9e-13 MTKEEVFAKVQEVIADQLEKDASKITMETSFSEDLEADSLDIFEVVDQLEDEFDIDIDTD ENMDTVGKLVDYIIENQD >gi|269838503|gb|ACXB01000008.1| GENE 48 42288 - 43247 929 319 aa, chain - ## HITS:1 COG:L0182 KEGG:ns NR:ns ## COG: L0182 COG0332 # Protein_GI_number: 15672753 # Func_class: I Lipid transport and metabolism # Function: 3-oxoacyl-[acyl-carrier-protein] synthase III # Organism: Lactococcus lactis # 4 319 5 325 325 265 44.0 7e-71 MGLKIIDSAKYSPERIITNDELAQTLDTSDEWISKRTGIKQRHRIDEETNAVMATRVAED LLAKTNTAPEEVDLIVVATMSPDYQTPSVAAQVQGALKASRAMAFDISAACSGFVYGMSV VNQMLQSPNYHKALLIGSEALSRLLDWQDRSTAVLFGDSAAGVLVENDPASSASLIAERL TTYGDLGEYLTAGNVAALTDSTQSYFFQMNGRKVYEFATNRVPESIQAVLQAAEIDARDV KYFLLHQANARIIKSVAKRLELPIEKFPINIADYGNTAAASEPLLLAELMQEHKIQRGDI IVFSGFGGGLTIGTNVIKF >gi|269838503|gb|ACXB01000008.1| GENE 49 43260 - 43709 461 149 aa, chain - ## HITS:1 COG:L160425 KEGG:ns NR:ns ## COG: L160425 COG0764 # Protein_GI_number: 15672547 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases # Organism: Lactococcus lactis # 4 141 7 143 151 169 63.0 1e-42 MSILNAAEIMELIPNRYPILFMDYVDELEPGKSIIATKNVTINEEFFQGHFPGNPVMPGV LIIESLAQAASILILKSEEFAGKTAYLGAINNAKFRQIVRPGDVLKLHVEMIKKKRNMGV VETFATVGEKKVCQAQLTFIVGATDQPKA >gi|269838503|gb|ACXB01000008.1| GENE 50 44082 - 44438 237 118 aa, chain + ## HITS:1 COG:DR0054 KEGG:ns NR:ns ## COG: DR0054 COG1416 # Protein_GI_number: 15805095 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Deinococcus radiodurans # 9 118 4 111 111 61 33.0 4e-10 MRKADSLLMKIIIHIDEIEKWPMVLSNLAHLNEHYVNSDDVIELLVNGPAVVDLQTTQAR SASIQFALQPQNQLAVCQNSLDQRQINPGSLISAAKVVPSGVVELVEKQSAGYAYLRP >gi|269838503|gb|ACXB01000008.1| GENE 51 44460 - 44786 428 108 aa, chain + ## HITS:1 COG:Ta0182 KEGG:ns NR:ns ## COG: Ta0182 COG0393 # Protein_GI_number: 16081336 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Thermoplasma acidophilum # 1 103 15 118 133 95 47.0 3e-20 MEEMLVTTTEHIPGKEYQVLGEVFGLTAQSKNLVRNIGAGLKNIVGGEIKDYTKMLDESR HIAVQRLRENAAEMGADAVVMMRFDSGSIGSDMQSVAAYGTAVKFIQA >gi|269838503|gb|ACXB01000008.1| GENE 52 45192 - 45422 233 76 aa, chain - ## HITS:1 COG:no KEGG:LSA1873 NR:ns ## KEGG: LSA1873 # Name: not_defined # Def: hypothetical protein # Organism: L.sakei # Pathway: not_defined # 4 75 82 153 195 65 48.0 5e-10 MVKKKSLDYRLAAAVYGTPLWGAFMTDLVAINESKSDNVVSGEAEVKALESHLDQLGVSS RAVLVGLGDKTAATLR >gi|269838503|gb|ACXB01000008.1| GENE 53 45538 - 45909 545 123 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116492617|ref|YP_804352.1| 50S ribosomal protein L19 [Pediococcus pentosaceus ATCC 25745] # 1 117 1 117 119 214 90 1e-54 MNELINKITKEQLRDDIPEFRAGDTVRVHAKVVEGNRERIQMFEGVVIKRHGSGISATYT VRKISNGIGVERTFPLHSPRVAKIDVVRYGRVRRAKLYYLRALHGKAARIKEDRRKANAM KNK >gi|269838503|gb|ACXB01000008.1| GENE 54 46025 - 46780 791 251 aa, chain - ## HITS:1 COG:ECs0554 KEGG:ns NR:ns ## COG: ECs0554 COG0390 # Protein_GI_number: 15829808 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Escherichia coli O157:H7 # 9 250 19 260 268 233 54.0 2e-61 MNLIVSPLALSFAIILVIIALGINLHEKIGLEKDMVVGVVRAVIQLTVVGYVLTYVIKVD RVWLTILMVLIIIFNAALNAKKRADKIPHAFFISLLAISVATVTTICLLVLARAIKFTPS QIVPISGMIASNTMVAIGLCYRSMNQTFKDQRQGVLERLALGANLKQASRAIVQSSIKTG MSPTIDSAKTVGIVSLPGMMSGLIFAGVDPTKAILYQIMVTFMLLAATSIGSVIACYMAY PLFYNDDLQLK >gi|269838503|gb|ACXB01000008.1| GENE 55 46764 - 47429 225 221 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 212 1 219 223 91 31 2e-17 MTKIFSVRNLNYVVNGTRILNSIDFDAELGDYVTIIGPSGSGKSTFLKILATLLTPTSGT IMYHGEDQLAIPKIEYRKEVSYCFQQPTLFGETVRDNLAFPFEIRNHPFNADKAVRSLEQ VDLTARFLDKPIVDLSGGEKQRVALVRNLLFPPKVLLLDEVTTGLDVDTKAIVHQLIEKM NQKSKITVLAITHDEAEIGLAHRLVTVENGRIVGERHELNR >gi|269838503|gb|ACXB01000008.1| GENE 56 47611 - 48348 596 245 aa, chain - ## HITS:1 COG:lin1906 KEGG:ns NR:ns ## COG: lin1906 COG0336 # Protein_GI_number: 16800972 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA-(guanine-N1)-methyltransferase # Organism: Listeria innocua # 1 239 1 240 245 313 64.0 2e-85 MKIDILTLFPKMVEVPLHESIVGKAIESGKLGVEVTDFREYSTNKHKNVDDYPYGGGAGM LLTPQPIFDAMEHVKSQNQQSAGRVILVDPGGKRFDQAMAEDFAKEEHLTFICGHYEGYD ERIKTLVDDEVSLGDFVITGGELAALTMIDATVRLLPDVLGNDESAEDDSFSTGLLEFPQ YTRPADFRGLKVPEILLSGNHGKIDEWRRTMALKKTLERRPDLLKTARLTAEDQKILREL QTPDI >gi|269838503|gb|ACXB01000008.1| GENE 57 48348 - 48863 504 171 aa, chain - ## HITS:1 COG:SP0778 KEGG:ns NR:ns ## COG: SP0778 COG0806 # Protein_GI_number: 15900672 # Func_class: J Translation, ribosomal structure and biogenesis # Function: RimM protein, required for 16S rRNA processing # Organism: Streptococcus pneumoniae TIGR4 # 1 171 1 169 172 164 52.0 6e-41 MNYYNVAKIVNTRGLRGELKVIAYTDFPEERFQAGTELQLFKDANATTPTQAVTVQSAKP FKGMWLIQLAGLDSINEVEKFKGMMLKIAEDQLQELADGEFYQHKIIGLTVIEDGQTLGK VKEILSYGPNDVWVVERPGKKDLLLPYLNDVVLKVDLDKSIVEVAVPEGLD >gi|269838503|gb|ACXB01000008.1| GENE 58 48940 - 49212 442 90 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116492614|ref|YP_804349.1| 30S ribosomal protein S16 [Pediococcus pentosaceus ATCC 25745] # 1 90 1 90 90 174 93 1e-42 MSVKIRLKRMGSKKRPFYRIVVADSRSPRDGRFIAQVGTYNPLVEPVAVKLEEEEIMNWL NNGAQPSDTVKNILSKAGIMKKYHEAKYTK >gi|269838503|gb|ACXB01000008.1| GENE 59 49325 - 50758 1444 477 aa, chain - ## HITS:1 COG:SP1287 KEGG:ns NR:ns ## COG: SP1287 COG0541 # Protein_GI_number: 15901147 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal recognition particle GTPase # Organism: Streptococcus pneumoniae TIGR4 # 1 443 1 443 523 551 66.0 1e-157 MAFEGLTERLQKTFNNLRKKGKVTEADLRDTMREIRLALLEADVNFTVVKKFVKTVREQA LGSDILEGLNPAQQIVKLVNDELVKMMGTEASPLNQAPKIPTVIMMAGLQGAGKTTTTGK LALKLKNEKKARPLLIAADVYRPAAIDQLVQVGEQIDVPVYQEGTDVSPVEIVRHGLEQA AENKNDYVFIDTAGRLQIDEKLMQELADIKDLAHPDEILLVVDAMTGQNAVNTAEGFNDK LDVTGVILTKLDGDTRGGAALSIRAVTGKPIKFVGQGEKMEDLDVFHPDRMASRILGMGD MLTLIEKTQKEFDEKQAAEMSQKIRENTFDFNDFLDQMNQVQSMGPIEDIVKMIPGMANN PALKNINVDPKDIEHTKAIVYSMTKQERENPDILNPSRRRRIAAGSGRPVVEVNRMIKQF NQMKKMMNQMSKGNFGPMEGMFGNGIKGKLSKMAMNSMVKRNKKNKKKRMKKNKKRK >gi|269838503|gb|ACXB01000008.1| GENE 60 50775 - 51116 351 113 aa, chain - ## HITS:1 COG:SPy1201 KEGG:ns NR:ns ## COG: SPy1201 COG2739 # Protein_GI_number: 15675166 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 1 107 4 106 113 96 57.0 1e-20 MEIEKNNRVNSLLEFYEQLLTPKQKEYITLYYADDYSLGEISEEFHVSRQAVYDNIKRTV KILEKYEQQLHLLRNFEARNAKFDRIQAYVAKKYPEDTQLKRFLADLEQSEEE >gi|269838503|gb|ACXB01000008.1| GENE 61 51122 - 52279 1274 385 aa, chain - ## HITS:1 COG:lin1917 KEGG:ns NR:ns ## COG: lin1917 COG0552 # Protein_GI_number: 16800983 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal recognition particle GTPase # Organism: Listeria innocua # 79 384 21 325 328 331 59.0 1e-90 MAWFFGKKKKKAKEAEKKVEPSTPVSQPEVEASPDKVKEAPTNTTPVKEPESKPEPTPAK EVSSAAPVNEEPQLNEAEKYDRGLERSRKSFGQKLSALFTNFSGVDDDFYDDLEETLIEA DVGFDTALEISEEVREEIEFENVSDPEKISQLIVRRLVDLYTRNGSAEDNHLVFSKEGPT VFLFVGVNGVGKTTSIGKMAARFKARGRKVLLAACDTFRAGAIQQLEEWANRDGVDIVTG KEKSDPAAVAFEAVKKAKAENYDLVFIDTAGRLQNKVNLMKELDKIKRVISREIPDAPQE SLLVLDSTTGQNALTQAKAFLETTNVTGIILTKLDGTAKGGIVLAIRNQLHLAVKYVGLG EKVEDLSPFNPEEYVRGLFKGLLDE >gi|269838503|gb|ACXB01000008.1| GENE 62 52280 - 55834 3114 1184 aa, chain - ## HITS:1 COG:lin1918 KEGG:ns NR:ns ## COG: lin1918 COG1196 # Protein_GI_number: 16800984 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Chromosome segregation ATPases # Organism: Listeria innocua # 1 1176 1 1180 1186 647 38.0 0 MKLRTIEISGFKSFADHTKIDFKDGITGIVGPNGSGKSNIIEAIRWVMGETSAKSLRGGK MPDVIFSGTQKRKPLSRAAVSIVFDNSDHFLDSKFDEVMISRRLFRNGESQYELNHQECR LKDILNLFIDTGLGRESLSVISQGKIEEIFNSKPEDRRAIIEEAAGVLEYKQDKRRAESE LEKTSGYLERVNDLIVELQKQVEPLEEQAAVAKDYLQQKKRFDRLEQTRLVRTITRNSDL QKRWAKEAEVKQTEAHQLENKLNELVKQRDRLKEQVNQQSKQKDDLQAELVRLNRLEQQL AGEHDLQIERRKYFEQEQSRLTEQIEQVQEQIDAGQQDLKDLEQLTADLNRQIKKTKQAL QLLTDDHQEQKKADLQAQIEDFRAQYVDHLQKLTSLKNQYSFSQQDQKRDEQQRLKVELN LARFNKELQELQTKLAELNQAVANTTEIFQKQTGKLQELTQRRNRLSQEYEEARQQWLDG SDIVHRATSKLEALTSLKNEHTGFYQGVRAVLQQRERFPGLVGPVADVIEVPEQYTVAIE TALGSQIQNVVVDTDQTAKSIIEFLKKQRQGRVTFLPRNTLQARTIRSEMLTQVHSLAGF CGVASDLIKVANVDRVVSQHLLGTTLIADNLDHALQISQRIQRRYRVITLAGDVVGVGGT MTGGTMKHGRQGLLQQDQEIKRLQTQIAEMKQKLAIKERHVQELLAQGKQVQGEIAKLTE TQRTSEQSKVKAENQVSLTKERIAELERRIKATNFELTQLSPVDDAIQKLPAQISELEAK IQDLKDQTAEKQKQLALFDNDAEARQEQRAELQIKLAKLNEQYSQKEQQFQTARQTQIDL QDRLEETRRQLVQLQEEQSSSAKSQTQAVNLVDVQKRLKQREEAMTNLQTEWQKAQVAQD RVIADYELTQKQCSEAQSQVQEAQNTLALVESKIELAADQLNDDYQQTFESAQAVVDQSL DDEQLRRELKLLRRGLDELGTVNLGAIAEYERVSTRYNFLKDQKEDLSSSKQQLEQSIAE IDQEASQRFKQTFDQVAEEFGQVFVKMFGGGHAELELTDPDNLLTTGIEIKAQPPGKKLQ RLSLLSGGEKSLTAITLLFAILQVKPVPFCILDEVEAAFDDANVDRFAKYLRTFQDTTQF IVITHRKGTMMEADVLYGVTMQESGVSKMVSVSVDEIERREQVG >gi|269838503|gb|ACXB01000008.1| GENE 63 55844 - 56542 500 232 aa, chain - ## HITS:1 COG:lin1919 KEGG:ns NR:ns ## COG: lin1919 COG0571 # Protein_GI_number: 16800985 # Func_class: K Transcription # Function: dsRNA-specific ribonuclease # Organism: Listeria innocua # 7 231 5 229 229 240 52.0 2e-63 MLKDLEDDLSEMFDIHFTKHELLDEAFTQASYVNEHPHQGLKFYERIEFLGDAVLQLVVS EYLYKRYPEMPQGKLTRLRAAMVCEASFSDFAKECHFDRYIRLGKGEEKSGARQRPSLLC DIFESFIGALYLDQGRQAVEKFVRQVIFPKLDEGRFDHIIDHKSELQELLQRNGEVEINY ELISETGPDNDLVFTVQVSAANQVLAKGSGHSKKAAEQNAANKALQKLRNRN >gi|269838503|gb|ACXB01000008.1| GENE 64 56644 - 56886 348 80 aa, chain - ## HITS:1 COG:SA1075 KEGG:ns NR:ns ## COG: SA1075 COG0236 # Protein_GI_number: 15926815 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl carrier protein # Organism: Staphylococcus aureus N315 # 5 76 2 73 77 62 56.0 2e-10 MSKEEIFNKIAAILADRFELDADQITEKLNFKEDLNADSIDIVEFVLELEDTFGAEISDE DAEKLTTVADAVNYISEHQS >gi|269838503|gb|ACXB01000008.1| GENE 65 56928 - 57971 1173 347 aa, chain - ## HITS:1 COG:SPy0022 KEGG:ns NR:ns ## COG: SPy0022 COG0416 # Protein_GI_number: 15674266 # Func_class: I Lipid transport and metabolism # Function: Fatty acid/phospholipid biosynthesis enzyme # Organism: Streptococcus pyogenes M1 GAS # 2 328 3 327 335 357 57.0 2e-98 MKIAVDAMGGDNAPEQIVKGVAAAREALPDVEFILYGKKDEITKYMDDFRNVQIVHTDEV ITMEDEPVRAVRRKKQSSMVLAAQAVKEGNADAIFSAGNTGALLAAGLFVIGRIKGVDRP GMTTTLPSLQGPHDNFTMLDVGANAESKAKNLHDFAILGNFYSANVMHITNPRIALLNNG TEYDKGDRVHKEAYQLLNDDSSLNFVGNVESRELLNGAADVVVTDGFTGNAVLKNTEGTA LSMLKLVKDTILNSGVKGKMGGLLLKSAFSQIKDRMDYSKHGGAVLLGVKAPVVKAHGSS NANQVKNALIQVHEIVDSKLVKNLAEYFDMHVKCIQQDEVDKPRENN >gi|269838503|gb|ACXB01000008.1| GENE 66 58005 - 60011 1792 668 aa, chain - ## HITS:1 COG:lin1925 KEGG:ns NR:ns ## COG: lin1925 COG1200 # Protein_GI_number: 16800991 # Func_class: L Replication, recombination and repair; K Transcription # Function: RecG-like helicase # Organism: Listeria innocua # 4 668 12 682 682 678 50.0 0 MQVLAGVGPKRAQALQELGIQTIEDLITYYPFRYEDLAAKKPQEVADQQKVTFQGIVATA PTIARFGRHKVRVNFRLLVENSSVMVTFFNQPWIKKQLEANQEVAIYGKWDANRQSLTGI KIITEEQGMEAVYPANKHIRQATIQQLVEAALNEYAEQVQDVIPEALIEKYRLMHRLAMI KALHFPGDEQITKQARRTAMFEEFLVFQMGLQVVKSRDRVEKGTKIDYQIQLVREFIQQL PFELTGAQKRVTNEILANLKSAWHMNRLLQGDVGSGKTVVAAIAMYATITSGHQAALMAP TEILAEQHANNLIKFFANFDVKIGLLVGGMRKKVRNELLEAVKAGEIDIVIGTHALIQDD VEFKNLGLAIIDEQHRFGVNQRQKLRQKGANPDILAMTATPIPRTLAITAYGDMDVSIID QLPAGRKPVVTKWLKKGEWDKVLALMEHEFKKGRQAFVVAPLIEESEVMDLQNAMTLYEE LKDFFGQRYAIGILHGKMDGAEKDQIMADFKAGKYAGLVSTTVIEVGVDVPNATLMVIQD ADRFGLAQLHQLRGRIGRGQQQAYCLLVADPKNAVGKQRMQIMVETNNGFRIAEADLKMR GQGDLFGQQQSGVPEFKVGDPVVDLGALQTAQLEAAKIVNQPDWQSQPAFQNLAKYLNQV MQIEQGLD >gi|269838503|gb|ACXB01000008.1| GENE 67 60134 - 61816 1791 560 aa, chain - ## HITS:1 COG:SPy1885 KEGG:ns NR:ns ## COG: SPy1885 COG1461 # Protein_GI_number: 15675702 # Func_class: R General function prediction only # Function: Predicted kinase related to dihydroxyacetone kinase # Organism: Streptococcus pyogenes M1 GAS # 8 560 4 554 554 536 52.0 1e-152 MEAIETLVTNEVFDQMVQASADRLKMNADFINSLNVFPVPDGDTGTNMSLSLESGAKYEA NDASEEVGHLAGSLAKGLLMGARGNSGVILSQIFRGFAKSVEGKESLDAKDLADAVANGA KTAYKAVMKPTEGTILTVVREAAKAGNEAALTSDNLAEVMQAIDTAAQAALKKTTELLPV LKEVGVVDSGGQGLVFVFDAFNDVLNGKDVSEYQHEPDVTEINEMVEAKHHQSVQGKINP EDIKYGYCTQMMVRIGKGLQVSQEFDYDTFYNYLAKLGDSLLVINDDEVVKVHVHTEHPG DVLSWGQQFGDLTKIKIDNMRWQQEEIIEQDDSLTAPEPKEAPETAVIAISSGDGISKLF NSLGVTHIISGGQTMNPSTADIAAMINNSGAKQAIVLPNNKNIFLAAEQAVEVAEIPTKI VHSRTISQGMAAMLEFDPEAELDENASAMEDNLDTVKSGQVTVAVRDTKLDGRQIRKDDY MGMIDGKIVNTAANLMEATTEMVKLMLDEDSEIVTIIYGKDANQKQADELEQAILAIDED LEIEIHEGDQPVYPFLISVE >gi|269838503|gb|ACXB01000008.1| GENE 68 61842 - 62204 412 120 aa, chain - ## HITS:1 COG:BH2499 KEGG:ns NR:ns ## COG: BH2499 COG1302 # Protein_GI_number: 15615062 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 1 116 1 116 120 133 60.0 1e-31 MAVKIKTKNGTIEVSNDVIATVVGSAATDNYGVVGMASKNQIRDNINEILKRENYARGVV IKQEDNGVAIDVYIIVGYGTKISEISKNVQSKVKYNLESMLGISANSVNVFVQGVKALSD >gi|269838503|gb|ACXB01000008.1| GENE 69 62501 - 62686 306 61 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|116492603|ref|YP_804338.1| 50S ribosomal protein L28P [Pediococcus pentosaceus ATCC 25745] # 1 61 1 61 61 122 96 7e-27 MAKDFVTGKRTSFGNTRSHALNHSRRSWKPNLQKVRILVDGKPKRVWVSARALKSGKVTR V >gi|269838503|gb|ACXB01000008.1| GENE 70 62770 - 63411 628 213 aa, chain - ## HITS:1 COG:L76216 KEGG:ns NR:ns ## COG: L76216 COG1564 # Protein_GI_number: 15673806 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine pyrophosphokinase # Organism: Lactococcus lactis # 1 213 1 207 211 144 39.0 2e-34 MKIFNLLVGGDPANLPENWQELDGEWVGVDRGALRLVNEQLKGSLAIGDFDSVSEAEFAK VAAGFDRMVKLNPIKDDTDTEAALAKVLNIDDHAQVRILGVSGGRIDHLLANVLMVLEAR FRRFAEQITLIDRQNRITFFNSGKHTIKKEAGFKYLSFIPLTPIDALTLDDEKYQLHNHM VPNARAYVSNEFIGSTATVYLSNGLIAVIQSKD >gi|269838503|gb|ACXB01000008.1| GENE 71 63411 - 64058 910 215 aa, chain - ## HITS:1 COG:SPy0264 KEGG:ns NR:ns ## COG: SPy0264 COG0036 # Protein_GI_number: 15674444 # Func_class: G Carbohydrate transport and metabolism # Function: Pentose-5-phosphate-3-epimerase # Organism: Streptococcus pyogenes M1 GAS # 2 211 4 215 220 229 52.0 3e-60 MIKVAPSILSADPANLMKDVEQVQGADYLHVDVMDGSFVPNLSFGLNTVKGLAQDCDIKL DVHLMIQNPENYVEQFAQAGASIIGVHVESTQHIARAIQLIKQAGAQAEVVVNPGTPLTE LEELLPEVDQVLIMSVNPGFGGQKFLESSISKVKRLSALRQARGLEFDIEIDGGISDQNV KQVYDAGVDVAVAGSYIFNAPDYTKQVQTLKDLTK >gi|269838503|gb|ACXB01000008.1| GENE 72 64055 - 64984 533 309 aa, chain - ## HITS:1 COG:SPy0263 KEGG:ns NR:ns ## COG: SPy0263 COG1162 # Protein_GI_number: 15674443 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Streptococcus pyogenes M1 GAS # 4 297 3 285 290 292 50.0 5e-79 MHTGQIIQLLAGFYDVLTEQHEVIRTRARGNFRNQQTKPLVGDVVDFKENSDQTGYITSI HPRKNELVRPPLANIDQAVVVTAATQPDFSANLLDRQLVALAEKKISAVIYFSKTDLLDN EAYQDLKQIADYYQKIGYQVVFPVRQKDDADVKALRKLFAERLTIFMGQTGAGKSTLLNR IDPDLNIQTGEVSQALNRGKHTTRKVSLMNIDGGLVADTPGFSSYAVFEMADMELKECFL EIKQIGQNCRFRECLHLNEPGCAVKAAVENGEILASRYANYEQFMGLIRSQKPDYKRKGY QKKDRRKKK >gi|269838503|gb|ACXB01000008.1| GENE 73 64997 - 66520 1171 507 aa, chain - ## HITS:1 COG:lin1934_1 KEGG:ns NR:ns ## COG: lin1934_1 COG0515 # Protein_GI_number: 16801000 # Func_class: R General function prediction only; T Signal transduction mechanisms; K Transcription; L Replication, recombination and repair # Function: Serine/threonine protein kinase # Organism: Listeria innocua # 1 304 1 309 342 343 56.0 4e-94 MTPNQTLNGRYKIIRPVGEGGMASVYLAHDLILDRDVAVKLVRFDMQDDASAVRRFQREA LSATELVHPNIVSVYDIGEEHGMNYLVMEYVEGKDLKRYIKDEFPLPLPQVVNLMGQILC GVQAAHRHGIIHRDLKPQNVLIDKHGNAKITDFGIAIANQQSSFTRTNTVIGSVQYLSPE QVRGHVATQQSDIYSLGIILFEMLTGKVPFEGETAVSIAIKHYQDQLPLVTDFNHQIPQA LENVVLKATAKNPTDRYKNVAEMALDLKTTLSPQRAQESKFVEDSLTEHTIVLDQKAINR QLDEPDSEQTRSIKMQVNEKLKSIKKNHQPAAKTEEMHRPKHRHPLRRRAAFMAFAILAF ILGILIAFKLSSPQVVRVPNLHGLTQNQATTKLSKENLGVGKITKVADDKTGYNKVVKTL PENGKAVQEGIKVNVVISKGPNSFDVDNYVGSDYPSTKRQLEAKGFTIKKKEVVTNRFDN NRIISQDVVAGQVVVPRLTTITFTIAK >gi|269838503|gb|ACXB01000008.1| GENE 74 66520 - 67263 644 247 aa, chain - ## HITS:1 COG:BS_yloO KEGG:ns NR:ns ## COG: BS_yloO COG0631 # Protein_GI_number: 16078639 # Func_class: T Signal transduction mechanisms # Function: Serine/threonine protein phosphatase # Organism: Bacillus subtilis # 1 241 1 242 254 189 44.0 3e-48 MKYAYLSDKGKVRKTNQDYVGIFKSDSESILTIVADGVGGNRGGDIASEMAVSHIGYLFE TSDINTVEDAKNWLTHQLAIENRKILQASKHYKNLNGMGTTIVLALFINDQVVVANLGDS RCYIYNQRAGLRQLSTDHSLVNELLKTGRITPEEARNHPQKNVITKTLGISEQAEAEIKV FNVAAGDILLLCTDGLTNLVRNDVIQQILGDQQSLEAKTRKLVDLANHAGGFDNVTVLIV ETEMGAS >gi|269838503|gb|ACXB01000008.1| GENE 75 67273 - 68607 1000 444 aa, chain - ## HITS:1 COG:BS_yloM KEGG:ns NR:ns ## COG: BS_yloM COG0144 # Protein_GI_number: 16078637 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA and rRNA cytosine-C5-methylases # Organism: Bacillus subtilis # 5 442 3 445 447 332 42.0 1e-90 MTELKNNPRDLAVDALESIDEGAYSNLELNQVIQDADLSEVDKHLLTELVYGVLQHRLTI DFYLANFLQRPEQTPRWVINLLRTAIFQMEFLDRVPTFAIFNETIEIAKRRGSDGVRKMV TGVLRSYQRQGTPSLDSIPDLTQRLATEYSVASWIVDQLLYELGEDKCRKILDSINRPAH LSVRMNPIQRSTAAIRQSLSEEYDVQESLLATDGLRLQNGPGLAQSASFQAGEVIAQDES AMLVGETMQLATGQKVLDACAAPGGKTTQLAQKVGPDGQVIAWDIYESRTRLIQQNARRM HLTNIVTEVHDATTPCPELKEEFDCILVDAPCSGIGLLRRKPETRYLKSKKDSSDLHRVQ LDILDNVASMLKVGGILTYSTCTMLRKENQMTIDEFLTQHPEFELLKTQTDKKVKADRTD LSLNIYPDDFGSDGFFIANMKKVK >gi|269838503|gb|ACXB01000008.1| GENE 76 68588 - 69553 863 321 aa, chain - ## HITS:1 COG:SPy1628 KEGG:ns NR:ns ## COG: SPy1628 COG0223 # Protein_GI_number: 15675504 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA formyltransferase # Organism: Streptococcus pyogenes M1 GAS # 1 313 1 309 311 345 56.0 6e-95 MKSIIFMGTPQFSAPILQSLIDHPDYNVIGVVTQPDRRVGRKHVLTPSPVKQVATKHDIK VYQPEKLSGSPEMEELINLNADLIVTAAFGQFLPMKLINSVKIAAINVHASLLPKYRGGA PVHYAIMNGDAETGVTIIYMVKKMDAGDMLAQAKMPITDQDDVGSMFEKLSILGRDTLLE TLPKLINGEITPVAQDEEQVSFSPNIAPEQEAVDINLPARLVDAKVRGLRPFPVAYVIME GQRTKLWKTTVVDQSTDLAPGQVVEKTKHELLVATGDHGVISILELQPAGKQKMSITDYL NGVGDNLHPGKQIIDNDGIEK >gi|269838503|gb|ACXB01000008.1| GENE 77 69575 - 71995 1723 806 aa, chain - ## HITS:1 COG:lin1938 KEGG:ns NR:ns ## COG: lin1938 COG1198 # Protein_GI_number: 16801004 # Func_class: L Replication, recombination and repair # Function: Primosomal protein N' (replication factor Y) - superfamily II helicase # Organism: Listeria innocua # 7 806 7 797 797 766 48.0 0 MTKKFDVIVNVPALQTNTPFTYRADAAIENDIKIGSRVIVPFGQAGRPVQGFVIGENRQG SPMELKNIISLLEPEPFLNQELIDLSAWLADKTFSFRVTCLNAMLPNLVKINTKRFVKVN RQRIDPQRVVEVLGEQQVVDLKVNELDYPQQRQLNQWVKDGSVTLEYATENSARKKMINW IWPLVDAEQITQITKTVRPNARQQLKLLQLIPEISVKEGLSQTSLIKDYQISRGTVDHAV EQGWLKRDLVEQYRDPFAQSDLQTDQELNLNDEQASAFKKISDAVQNRRAKPILLEGVTG SGKTEVYLQSISQVLNQGRTAILMVPEISLTPLMVNRVRARFGDQVAVLHSALSDGEKFD EWRRIMRNEVKVVVGARSAVFAPLHNLGIIIMDEEHSETYKQTDAPRYHARDVAIYRAQN ANCPVVLGSATPALESRARAERGVYDFIQIHKRANQQALPAIRVIDMRRHLGDGFNENFS APMVNAIQERLLKHEQVVLMLNRRGFSSFVMCRDCGFVLKCPNCDVSLTMHLDTHSMQCH YCGHEEPIPRKCQNCGSDKIRFFGTGTQKVEQQLQQILPQARVLRMDVDTTRRKGAHERL LARFGNHDADILLGTQMIAKGLDFPEVTLVGVLNADTSLELPDLRASERTFQLLTQVAGR AGRAQKAGEVLIQTFNPDHYAIKLAQKQDYEDFFQKEMYLRHLGKYPPYYFTVLINVAAS DEATAQKNAYEVLNKIQPQLSSQAIVLGPTPKSVSKIKQKYYYQILIKYQKEPRLHDALL KVLNESQEKFRHGVRITIDADPQNFM >gi|269838503|gb|ACXB01000008.1| GENE 78 72009 - 73199 998 396 aa, chain - ## HITS:1 COG:PA5320 KEGG:ns NR:ns ## COG: PA5320 COG0452 # Protein_GI_number: 15600513 # Func_class: H Coenzyme transport and metabolism # Function: Phosphopantothenoylcysteine synthetase/decarboxylase # Organism: Pseudomonas aeruginosa # 2 395 8 399 402 291 43.0 2e-78 MKILFVITGGIAEYKVVEAVRYQVKAGNAVKVVMTKMAEEFVAPLTFATLTNEPVYDDFK SDLGKPVAHVALADWADQVVVAPATANFIAKMALGIADDFASTVVLASSAKKRVLPAMNV NMWQNPAVQRNLTQLKADGVEILEPVVGELAEGYSGKGRFPSAEVVNQFISQPVSSSQQL AGYKVVVTAGGTREAIDPVRFIGNRSSGKMGFALAQQAAAAGATVTLITGPTNLSLDTNS KIKRIDIEDVAELKAALDQELKNADVLIMAAAVSDYRVAKVSTHKLKKHDFKNGLQLELV ENPDILATLDRPDRLKYVVGFAAETDDLLENATGKMQRKGLNMVVANDVGNPEIGFNVDD NAVTILRPDQRAKVIAKQSKVKIAEAILKIVSEELK >gi|269838503|gb|ACXB01000008.1| GENE 79 73390 - 73599 379 69 aa, chain - ## HITS:1 COG:lin1940 KEGG:ns NR:ns ## COG: lin1940 COG1758 # Protein_GI_number: 16801006 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, subunit K/omega # Organism: Listeria innocua # 2 67 1 67 67 57 50.0 6e-09 MILYPSVDKLLERVDSRYSLIMLASKRAHQLDEGAPELLDHYSSHKNVGKALEEIVAGDV VIDPNEKDL >gi|269838503|gb|ACXB01000008.1| GENE 80 73601 - 74215 699 204 aa, chain - ## HITS:1 COG:SP1738 KEGG:ns NR:ns ## COG: SP1738 COG0194 # Protein_GI_number: 15901570 # Func_class: F Nucleotide transport and metabolism # Function: Guanylate kinase # Organism: Streptococcus pneumoniae TIGR4 # 1 201 1 201 208 252 64.0 4e-67 MAKRGMLIVLSGPSGVGKGTVRKAIFDQGGNDFQYSVSMTTRKPREGEVNGEDYYFVSKA EFEKNIEEGQMLEYAKYVDNYYGTPLKYVNQTLDSGRDVFLEIEVNGARQVREKMPDGVF LFLTPPDLMELKQRIINRGTEDIETINKRMEKAVDEIKTMHDYDYAIVNDKVENAVESIK NIIKGEHLRVSRVYPEYQEMLGEL >gi|269838503|gb|ACXB01000008.1| GENE 81 74389 - 74736 312 115 aa, chain + ## HITS:1 COG:no KEGG:PEPE_0824 NR:ns ## KEGG: PEPE_0824 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 5 115 1 111 111 98 50.0 7e-20 MEAIMESRKLSPLKLFNFSLAAIRSTYESLFVVPEDRGLNIVDQAMSLTQINDTIAFAIQ NQVPVQMQINLTASRVVELRGHLLLNRSGRLCIQDQNSNTTQTLEDAEIRSIALI >gi|269838503|gb|ACXB01000008.1| GENE 82 74863 - 75096 171 77 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MPGFKYTALEKLDFINEFKLRWLERHRILKAYQVLIKLVKNGIEYFNQQQEMASFLMNTG MKPFNKLPNFILFCLST >gi|269838503|gb|ACXB01000008.1| GENE 83 75261 - 76940 1782 559 aa, chain - ## HITS:1 COG:L0264 KEGG:ns NR:ns ## COG: L0264 COG0497 # Protein_GI_number: 15672842 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA repair # Organism: Lactococcus lactis # 1 552 1 553 555 462 47.0 1e-130 MLLELSIKDFAIIEKLDASFRQGMTVLTGETGAGKSIIIDAVGLLAGGRGSVDFVRTGAD KAVLQGVFDIAEIANTKTVLEELGIEPTNDLVITRELLKTGRSVCRVNGTIVNLNSLKKI GQTLIDIHGQNEHQELMDSDKHLRLLEQFDYAAVADTKQRYQAAFKAYTKLNRRLNQSLK NEHEWNQRVDMLQFQVDEIKAANLIEGEDEELEKRRDQLVNFQSISDALATSFQVLESEE GVSATDQIGNVMQEMQGIADYDEEYEQIADEVQNAYYSLEDVTNRVRSAIDSMEWNPAEL DEVEQRLETIRQLKKKYGNSITEILKYLSRIENELAEMTGAGQNLDDLAVEVEKRLQETK QLGTQLTNLRQKMALKLEQAVRDQLAGLYMEKTQFKVQFNSKKVPELDGLDDVEFLIQPN PGEDLKPLAKIASGGELSRIMLALKTIFARNEGVTSIIFDEVDTGVSGRVAQAIADKIHE ISNHSQVLCISHLPQVAARADYQLHVAKKVVKGRTMTNLTALDDEGRVNEIAKMLAGVDL TELSLEHARELLQMEHEQA >gi|269838503|gb|ACXB01000008.1| GENE 84 76952 - 77410 340 152 aa, chain - ## HITS:1 COG:BH2777 KEGG:ns NR:ns ## COG: BH2777 COG1438 # Protein_GI_number: 15615340 # Func_class: K Transcription # Function: Arginine repressor # Organism: Bacillus halodurans # 1 136 1 136 149 105 39.0 3e-23 MRKNQRHALIKQIINNHQVGRQEDIVEILQKQGIQVTQATISRDIKELQLVKVATVDGRL RYALPKTDSSQIEQRFFNLLATSLITIKAQDQLVYIDLKPGNGPSVAATLKQVNYSFVFA VIADDDGVLVVCKDNERAIQLRKRITKAIAYT >gi|269838503|gb|ACXB01000008.1| GENE 85 77419 - 78237 966 272 aa, chain - ## HITS:1 COG:lin1403 KEGG:ns NR:ns ## COG: lin1403 COG1189 # Protein_GI_number: 16800471 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted rRNA methylase # Organism: Listeria innocua # 1 271 3 273 274 325 62.0 8e-89 MAKERVDVLLVKQGLFDTREKAKRAVMAGEILGDNEERLDKPGVKIDPNTKLHLKGKPMP YVSRGGLKLAKALDVFDIDVSGLVVLDIGSSTGGFTDVMLQNGAKLSYALDVGTNQLVWK LREDPRVVVMENTNFRYSKLADFTSGQPEFASIDVSFISLKLILPVLKQILKTGGSVVSL IKPQFEAGREKVGKHGIVRDRKVHEEVLKNVLTMANAEGFDVLGLDYSPIKGGEGNIEFL AWLSSADAELGSISSKVNINEVIDRAYSNLNS >gi|269838503|gb|ACXB01000008.1| GENE 86 78251 - 79135 714 294 aa, chain - ## HITS:1 COG:L80459 KEGG:ns NR:ns ## COG: L80459 COG0142 # Protein_GI_number: 15672839 # Func_class: H Coenzyme transport and metabolism # Function: Geranylgeranyl pyrophosphate synthase # Organism: Lactococcus lactis # 16 276 8 267 285 196 44.0 3e-50 MNKEFNEFVRRSTPLINDHFAELMEKVEKHQPQLARMMAYSFNAGGKRVRPLILLAILEV LGEPINPDVLTVAVALEAVHTYSLIHDDLPAMDNDDLRRGRPTSHKQFGEAEAILTGDAL LTIAFQWLAATGFTAEVKATVIGDLAQAAGPEGMIAGQLQDIEGNHQRYTIEQLKKLHEL KTGQMLIFPAKAALHIAKCETTVATAILRFVQNFGLAFQIHDDIIDVTESSVELGKTAGK DQALNKNTYVNLLGLDSAKERLSTVLNACEEALIPLVERGYEVSLLRGFLAYLK >gi|269838503|gb|ACXB01000008.1| GENE 87 79128 - 79364 355 78 aa, chain - ## HITS:1 COG:SPy1499 KEGG:ns NR:ns ## COG: SPy1499 COG1722 # Protein_GI_number: 15675403 # Func_class: L Replication, recombination and repair # Function: Exonuclease VII small subunit # Organism: Streptococcus pyogenes M1 GAS # 1 70 1 70 71 58 64.0 3e-09 MEKEKTFEENLQELQDVVNNLEQGDIPLEKALSEFQKGIQLSSQLQDTLKNAEKTLTKVM KDNGEESDLDLETDETNE >gi|269838503|gb|ACXB01000008.1| GENE 88 79364 - 80707 1353 447 aa, chain - ## HITS:1 COG:SP1207 KEGG:ns NR:ns ## COG: SP1207 COG1570 # Protein_GI_number: 15901070 # Func_class: L Replication, recombination and repair # Function: Exonuclease VII, large subunit # Organism: Streptococcus pneumoniae TIGR4 # 4 446 2 445 446 369 48.0 1e-102 MTNDQYLTVSALTQYIKRKFDVDPYLHRVYVVGEISNFRLRVNGHQYFSIKDEQAKINVI MFKSAFAKVKFQPEEGMRVIVSGRISVYPGNGSYQLYVDSMQPDGVGALYQAYEQLKAKL DKEGLFKAPKQAIPRFPKKIAVVTSRSGAVIRDIITTVKRRYPIVQLVLFPVAVQGNEAA PNIAAQIKFINTLPDFDTIILGRGGGSIEDLWPFNEEVVARAIFESRIPTISSVGHETDT TIADLVADVRAATPTAAAELATPVLTDVLTDLQKTELRVINAFKNILKIKQQQARQLENS YIFQEPQRLYEGYVQNVDQLTERLRNAQKQYLADRSAELVKLQHRLLVNNPQNQVDLATQ KVGYLREQLLSVITRRFTQSQTQMQKLVAALDNLSPLRIMSRGYTYVTKDEQVVNSVEKL SVNDAIKLNFSDGSADAIIKTINNEEK >gi|269838503|gb|ACXB01000008.1| GENE 89 80707 - 81558 679 283 aa, chain - ## HITS:1 COG:SP0825 KEGG:ns NR:ns ## COG: SP0825 COG0190 # Protein_GI_number: 15900713 # Func_class: H Coenzyme transport and metabolism # Function: 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase # Organism: Streptococcus pneumoniae TIGR4 # 1 275 1 274 285 308 61.0 7e-84 MGQIIDGKALAAEIDLQTKAEVMQLKERGIVPHLAVVLVGDDPASHIYVRNKKRRAEKLG IQSTVCQFPSSVTEATLLKEIDRLNRDTSVHAILVQMPLPPQIDEFKVTLAIDPRKDADG FHPVNMGRLLQNKTDRTPVACTPRGIMQMLHKYKINPEGKKAVVIGRSMIVGKPMAALLL NANATVTVAHSHTKNLSELTKQADILVVATGIAHFIKADQVKDGAVVIDVGMNRDQNGKL TGDVDFAEVSPKASFITPVPKGVGPMTITMLMRQTTDLTKWSI >gi|269838503|gb|ACXB01000008.1| GENE 90 81678 - 82040 438 120 aa, chain - ## HITS:1 COG:BS_yqhZ KEGG:ns NR:ns ## COG: BS_yqhZ COG0781 # Protein_GI_number: 16079488 # Func_class: K Transcription # Function: Transcription termination factor # Organism: Bacillus subtilis # 19 120 26 127 131 86 44.0 1e-17 MIFAQSVNPDADPEELKKQVLEEFHETDVADPFLDNLVTGVQENVSSINETIGKELKAGW TVNRLANPDRVILQIGTYEIKHTEVPNNVAINEALELAKKYTDEKARKFINGVLSNVAKD >gi|269838503|gb|ACXB01000008.1| GENE 91 82079 - 82510 542 143 aa, chain - ## HITS:1 COG:BH2786 KEGG:ns NR:ns ## COG: BH2786 COG1302 # Protein_GI_number: 15615349 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 1 120 1 120 132 76 35.0 1e-14 MADTKYLELKDSSSKSGGIAIAPDVVESIAGITVDQIDGVHLISNNISKGFNTILGRDAV GAGTKLIEDERGLVIRVNVMLDFGVSVPQVATKIQDRIQQQLLFMTGIVIDEVNVVVSGM VPDKTTSDIDPNDIFSENNGDQK >gi|269838503|gb|ACXB01000008.1| GENE 92 82530 - 83093 764 187 aa, chain - ## HITS:1 COG:lin1392 KEGG:ns NR:ns ## COG: lin1392 COG0231 # Protein_GI_number: 16800460 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) # Organism: Listeria innocua # 4 187 2 185 185 246 63.0 1e-65 MSTISTSDFHNGLTIEVEDNIWRIVEFQHVKPGKGSAFVRTKLKNLRTGAVQEKTFRAGE KMEQANIETRKMQYLYNDGANYVFMDNNTYEQVEIPEERLEEEKNYLIENMEVSISFFGS ETLGVELPKNIALKVESTEPSIKGNTASGGSKPATMETGLVVQVPFFVNEGDTLNINTQD GTYISRA >gi|269838503|gb|ACXB01000008.1| GENE 93 83210 - 83497 492 95 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116492580|ref|YP_804315.1| 50S ribosomal protein L27 [Pediococcus pentosaceus ATCC 25745] # 1 95 1 95 95 194 97 2e-48 MEMNLQFFSHHKGGGSTSNGRDSAGRRLGTKRADGQAAKAGMILYRQRGTHIYPGVNVGR GNDDTLFALADGIVRFERKGRDKRQVSVYPVADAE >gi|269838503|gb|ACXB01000008.1| GENE 94 83522 - 83848 425 108 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116492579|ref|YP_804314.1| ribosomal protein [Pediococcus pentosaceus ATCC 25745] # 1 108 1 108 108 168 75 1e-40 MIQAWIYREADRISGFKLTGHADAGEYGKDIVCAAVSVLAINTVNSIEQIASVMPLVDSD DDNGGFLSVNVPESKDREAEQKAQVLLASFELGLRDISKTYDKYLVMN >gi|269838503|gb|ACXB01000008.1| GENE 95 83871 - 84179 479 102 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116492578|ref|YP_804313.1| 50S ribosomal protein L21P [Pediococcus pentosaceus ATCC 25745] # 1 102 1 102 102 189 92 6e-47 MYAIIKTGGKQLKVEEGQSVYVEKLNAAEGEKVTFDQVLFVGGESAKIGSPVVEGASVAG TVEKQGKQKKITTFKYKAKKGQHTKKGHRQPYTKVKIDSINA >gi|269838503|gb|ACXB01000008.1| GENE 96 84310 - 84939 583 209 aa, chain - ## HITS:1 COG:lin2279 KEGG:ns NR:ns ## COG: lin2279 COG1309 # Protein_GI_number: 16801343 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 4 196 2 186 187 73 27.0 3e-13 MKNDPRIIKTINKLEKAFVMLLKTYDVSDINVRQISDEAGVTRGAFYSHFSDKKEFLEFT MESLIQELLKPSLKDSADYVEETKHENAHQANVLSLTEIFNHVAENYQAYTVVMGSDRLP SFNQTLKKRLMEEFEKFADYYDDEIDLGGFPFEVLSSFYVNGIVGMIKVWLEKGMMYTPH YMANAAKQVLDSKESVKANNLKLTDFFVV >gi|269838503|gb|ACXB01000008.1| GENE 97 85481 - 85993 547 170 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0809 NR:ns ## KEGG: PEPE_0809 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 170 1 170 170 220 67.0 1e-56 MKKFFAILLSLIMVTVVLGACTHNKVYGTVVVTPEKYKQISADKTMIEDSIKGLEKFNSE NPESEQKVIKTLNTLIKKGQRHLNKQDRAQFKQLLGDTPTGVKGIVKNAYDHQRGFDDDL SERIRNNMLKAIKLLPHGVTKHQDEQNKIYKQMLKDTQADRKLYRIGGNE >gi|269838503|gb|ACXB01000008.1| GENE 98 86351 - 86578 313 75 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0743 NR:ns ## KEGG: PEPE_0743 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 75 1 75 75 118 81.0 5e-26 MTYTDIYGFKHENATIVSKKDEFRRVFIIEDEKHRRFECLKEHPESTHKGSAHWKLSSKD TPPDNYWDVFETSDK >gi|269838503|gb|ACXB01000008.1| GENE 99 86721 - 87260 534 179 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0742 NR:ns ## KEGG: PEPE_0742 # Name: not_defined # Def: dUTPase # Organism: P.pentosaceus # Pathway: not_defined # 1 179 1 179 179 291 82.0 5e-78 MDWAKMLQASVNLDRDIRIKHNLQNSLADRIQEAYISLDVELAEIANAAEWFKVWKTHRG KRDGELSVHQTVLNEFVDAIDFFLLMANLNQWNHLIVIGDEQLANYQSDQRDLDLSLMYL NIKKMLFSTYSYNRGTDFQHAWHLFIKFGIQGLGFTPEELEKAYFAKNQINYQRQENNY >gi|269838503|gb|ACXB01000008.1| GENE 100 87274 - 88206 775 310 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0741 NR:ns ## KEGG: PEPE_0741 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 12 310 9 305 305 273 49.0 4e-72 MDKQKTQQTNTKANNEFKQNMLKVQDELNEGLKKGQHYAELMQVLTTTTDPEELLSATRQ LASFEVDTAAVVFPKKFAASDYYLIFMSRLLELNGLTNQFRSVMTEAGGHPVMHHQWPGT EQTFRFEKNGEHLAYVEQTSHQIIFRLDLEKQTMSFDTETINNLYFLSGSETDPQSALKK QVASFIKFGQLLEKDYNFQVDFNMFDARNEKTYVFEGTGLDSSILDELFVSAAQNHYILY NADEFLGAFLRLKSNVMLTIFEMSASDHQWAMRVQDQEEQYSLFDVLKDYAFLNDWYVNN IGDLKLKMIL >gi|269838503|gb|ACXB01000008.1| GENE 101 88199 - 89074 850 291 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0740 NR:ns ## KEGG: PEPE_0740 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 291 1 291 291 327 68.0 2e-88 MADERKNHGQSSGEILISQLRVKDQYINDLAQAIDQHDDLQVYQLLEPVRYREEIDQGFD LKYGEHPFELVRDQRAELAHYLSDNLIDYLIQKFPFFYYREVEKGQFIVFFGNWWDRRQI GTLDSLNIELALDEDKLSQLEKALQAEEAGESLNGDQIAELSADNVRLQKLIDGQAELEK KKEELLQQQSDLAEKGGLFESAKVKEERQQLKDDLAKVEEEIQTANQAPSKIREQQKQIL ALSKEDTMLGLETAALKKSFTSFKEFHELTQSLYHNYLMDLLDEGQVKSNG >gi|269838503|gb|ACXB01000008.1| GENE 102 89400 - 90740 1135 446 aa, chain - ## HITS:1 COG:SA1150 KEGG:ns NR:ns ## COG: SA1150 COG0174 # Protein_GI_number: 15926892 # Func_class: E Amino acid transport and metabolism # Function: Glutamine synthetase # Organism: Staphylococcus aureus N315 # 1 446 1 446 446 672 68.0 0 MAKKNYTPADIRQMAKDNNVQFLRLMFTDLFGVIKNVEVPISQLDKLLENKLMFDGSSID GFVRIEESDMYLYPDLSTWMVFPWGSEHGKVARIICEVYTSDRKPFAGDPRNNLIRALQD MKDEGFTDFNIGPEPEFFLLKLDENGKPTTHLNDQGSYFDLAPVDLGENCRRDIVLELEN MGFDVEASHHEVAPGQHEIDFKYADALTAADNIQTFKLVVKTVARKYNLHATFMPKPLDG INGSGMHLNMSLFNKEGNAFYDEKGELQLSQKAYWFLGGLLKHARSYTAVCNPIVNSYKR LVPGYEAPVYVAWSGSNRSPLIRVPSSKGLSTRFEVRSVDPSANPYLAIAAVLEAGLDGI RNQIEPDDSVDRNIYRMNVQERHEEHIQDLPSTLHNALKEFEKDDVMRKALGDHIFQSFL EAKKLEWASYRQEVTQWERDQYLEMF >gi|269838503|gb|ACXB01000008.1| GENE 103 90771 - 91136 462 121 aa, chain - ## HITS:1 COG:SP0501 KEGG:ns NR:ns ## COG: SP0501 COG0789 # Protein_GI_number: 15900415 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 1 114 1 114 118 125 55.0 2e-29 MSEKELRRSLSVLPIGTVMKLTSLTARQIRYYEQHQLVFPDRSEGNRRLFSLNDVDRLLE IKDYLADGLNIAEVKEQFARQAEARKRSISDSQMRKILRDELLQTGRLTDDDGPTFPIKR I >gi|269838503|gb|ACXB01000008.1| GENE 104 91216 - 92475 1409 419 aa, chain - ## HITS:1 COG:lin1335 KEGG:ns NR:ns ## COG: lin1335 COG4100 # Protein_GI_number: 16800403 # Func_class: P Inorganic ion transport and metabolism # Function: Cystathionine beta-lyase family protein involved in aluminum resistance # Organism: Listeria innocua # 11 417 3 408 408 461 55.0 1e-130 MKSWKDQYKPEVQKLITEVEQQIQPKLNEIDDQVTYNQQKVLNAFQKERVAEENLNGATG YGYNDMGRDALDQVYADVFQTEDALVRPQFVSGTHTISTAFFGMLRPNDKLLYLTGMPYD TIQEVIGITGEAGRGSLKDFQIDFDYVPLLADGKVDFEGMQSKLTPDVKVVAIQRSRGYD SRASFTVTEIEAMVKQVRKVAPDVTIFVDNCYGEFSETIEPTEVGVDVMVGSLIKNAGGG IAQTGGYVVGRRDLIEKIASRLTNVGSGKEEGATLENLRRMFQGFFMAPAVTGAAIKGAI FESAILEKCGLQVDPKWNDARTDLIQTINFGKPEPMIKFAKQIQKNSPIDSYVDPEPSVM AGYEDKVIMAAGTFVQGASIEFSADGPLRAPYTLYLQGGLTYAHVKVAIAKAVEATFFN >gi|269838503|gb|ACXB01000008.1| GENE 105 92472 - 93389 717 305 aa, chain - ## HITS:1 COG:lin1332 KEGG:ns NR:ns ## COG: lin1332 COG0324 # Protein_GI_number: 16800400 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA delta(2)-isopentenylpyrophosphate transferase # Organism: Listeria innocua # 4 282 6 282 305 279 53.0 4e-75 MQKVLAIVGPTAVGKTSLSVELAKRWNGEIISGDSMQVYQRLDIGTAKITPEEMQGIPHH LINVRTVQEHFTAADFKNAASQLIKEINGRNRLPIIVGGTGFYLQALLNDLQLGTANEDR QQVEKVRAALNQQEDDALWQQLKKVDPASYVNIDLNNRRRVIRALEVYQTTGQKFSEQTK SRGELAYDAFLIGLNTERAKLYERINQRVEIMLEQGLEAEARWLFKQPEVPQAVKGIGYR EWPAYFAGEQPYSTTVAQIQKDSRHYAKRQLTWFRNQMDVNWFDIIQKPDEKQIINQEIE EWLVK >gi|269838503|gb|ACXB01000008.1| GENE 106 93391 - 94125 489 244 aa, chain - ## HITS:1 COG:L1007 KEGG:ns NR:ns ## COG: L1007 COG0584 # Protein_GI_number: 15672046 # Func_class: C Energy production and conversion # Function: Glycerophosphoryl diester phosphodiesterase # Organism: Lactococcus lactis # 3 242 34 277 281 216 47.0 2e-56 MLTQVIAHRGSKGVRPENTLAAFKKAIEEGADGIETDVHLSKDGEMVIIHDETVDRTTNG TGRVFDHTLAELKQLSAGGSFSGRYQNEKIPTLQEVVDLLIAERYTGIFNLELKTDKFKY PGIEQKVFSFFKDLDYPFELVYSSFNPETLVTMHTLQPDVEMASLFKFNAKAARKLTHRK VIQNWHPSMAWVRGHRFLLGKRRLRPWTINVESDLRFCFQKGFLGVITDYPTRALQVRAT IQGG >gi|269838503|gb|ACXB01000008.1| GENE 107 94207 - 94383 273 58 aa, chain + ## HITS:1 COG:no KEGG:PEPE_0734 NR:ns ## KEGG: PEPE_0734 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 58 1 58 58 66 77.0 3e-10 MGKFVKGFLFGSVSTLGAIAGAVYTFHKVVVEPVEEIENRAEENRRRAERKRHAAQNG >gi|269838503|gb|ACXB01000008.1| GENE 108 94469 - 94888 521 139 aa, chain - ## HITS:1 COG:lin1388 KEGG:ns NR:ns ## COG: lin1388 COG0607 # Protein_GI_number: 16800456 # Func_class: P Inorganic ion transport and metabolism # Function: Rhodanese-related sulfurtransferase # Organism: Listeria innocua # 28 135 17 124 126 122 60.0 2e-28 MVAAAASNSSGFWINTVIIILIIAYLLYQLYMYWKRGKIATQLDNEAFRAGMRKAQVIDV REKKEFDAGHILGARNIPYSQMKSRTQELRPDLPVYLYDQGRTFSGRAAMLLSKRGFKQL YILKYGYQRWDGKTKKAKY >gi|269838503|gb|ACXB01000008.1| GENE 109 94917 - 95879 1037 320 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116517028|ref|YP_816079.1| glucokinase [Streptococcus pneumoniae D39] # 1 315 1 316 319 404 63 1e-111 MERKLIGVDLGGTTIKFAILTEDGEIQQKWSVETNVLDEGSHIVPDIIESINHHIDLYKM SKDQFIGIGMGTPGTVDRQRGTVIGAFNLNWKETQNVKEEIEKGTGIKFAIDNDANVAGL GERWKGAGENGDDVAFVTLGTGIGGGLIAGGQLLHGKAGAAGEIGHVTVDPEGYLCTCGK RGCLEQYASATGVVHVARDMAEEFSGDSELKRQTDDGQDITSKLVFDLAKEGDVLALRVV DRVCYMLGLALGNLANTLNPESIVIGGGVSAAGEFLLDRVRDNFEKFAFSTVRSSTQLKL ARLGNDAGVIGAASLARVFA >gi|269838503|gb|ACXB01000008.1| GENE 110 95879 - 96109 269 76 aa, chain - ## HITS:1 COG:SPy1530 KEGG:ns NR:ns ## COG: SPy1530 COG4483 # Protein_GI_number: 15675429 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 1 62 1 62 67 76 61.0 1e-14 MKTLYDVQQLLKQFGVFVYVGKRKWDIELMSIELKNLYKAGVIDQPTFVKAQLVLRHEHH IEEVRDHKQKNGGFLD >gi|269838503|gb|ACXB01000008.1| GENE 111 96142 - 96831 507 229 aa, chain - ## HITS:1 COG:RSp1525 KEGG:ns NR:ns ## COG: RSp1525 COG0705 # Protein_GI_number: 17549744 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein (homolog of Drosophila rhomboid) # Organism: Ralstonia solanacearum # 15 192 205 387 569 112 36.0 4e-25 MDKTKINLKNFFAGPFMTITLVALNVLVYLWLTLAGGSTDLTVLVTHGAMVPAMIKDGAG WASLFTSMFVHIGFEHLLFNMITLYFIGRLLEQVIGHGRFLLIYLLSGIFANVVSLAFAA PNSISAGASGAIFGIIGVWIMMAEQYRNYPFLAGMGRQMLIFSALGIVSGMFGTNIDIFA HLGGLVAGFLLGYGFSFPNLGKVPLKKRLGSGVLLLILLGVFVKLAFTL >gi|269838503|gb|ACXB01000008.1| GENE 112 96833 - 97411 684 192 aa, chain - ## HITS:1 COG:aq_1731 KEGG:ns NR:ns ## COG: aq_1731 COG0212 # Protein_GI_number: 15606807 # Func_class: H Coenzyme transport and metabolism # Function: 5-formyltetrahydrofolate cyclo-ligase # Organism: Aquifex aeolicus # 1 185 1 179 186 90 32.0 1e-18 MDKKQFRQRQIERLRQLSPDVKAKLEEQIMERFFEQTAVSTAKNVAITLSQKFELNTAPI IRSLQERKISVLVPKTFENRRMEFVPLTSETQLAPQAFGILEPVGGVPVAPTALDLIVVP GLAYEQTGGNRLGFGGGYYDRYLKRAPQAHKIVLAFNQQVYPAAHWPVDQFDVTMDLIIT EQGVQFKNERIR >gi|269838503|gb|ACXB01000008.1| GENE 113 97491 - 97640 267 49 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116492496|ref|YP_804231.1| 50S ribosomal protein L33 [Pediococcus pentosaceus ATCC 25745] # 1 49 1 49 49 107 97 2e-22 MRVHITLECTECHNRQYLSSKNKRNNPDRLELNKYCPRERKVTLHKETK >gi|269838503|gb|ACXB01000008.1| GENE 114 97743 - 99833 2315 696 aa, chain - ## HITS:1 COG:lin1477 KEGG:ns NR:ns ## COG: lin1477 COG0768 # Protein_GI_number: 16800545 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Listeria innocua # 12 692 17 713 721 417 38.0 1e-116 MKNPKKKFRRQKSELPFRLNLIFFGVFALLLLLIGQLGYLQILYGSKLQAEVNRSDNMVE TENVQRGMIYDSTGKVLVGNKAHQAVSYTKNMNVLPQDMYDVANKLSKYLTVEKNDLTST DIANYLLADSKNSKAYAQKIPNRENLSSKALQEKEIAAVKKDHVELTARQKNAARIYKTI SGAYQLSTVYIKETDLTSEELSQIGEHLSEMPGVKITTSWTRNYPAGDDVKSFAGTVSSS KVGLPSDEVNTLLAEGYARNDRVGQSYLEKRYEPVLKGTKSQTSVEVSSGNQVVKRVQKY AGKKGDNLVLSINSKFQEEVQKIMKEASQNAGGESTGGYAVVMNPKTGAVIALAGVDRDP STGKITDNALGTINEPIVMGSVVKGAMVSGALMDGVITPKDNTMIDKPIKLAGTGSKSSW FNSTGSANMPVDVSTALEVSSNSYMMQLAMKEGGFKYKEGAGLAGMNPTVFNKMRGYFEQ FGLGVKTGIDIPGESAGYKGPSSAADIGKALDLSFGNYDAYTTIQIAQYMSTIANGGYRI APHVVEQIRSSRSNGKLGAVQSTTTPQVLNYIDMSKEEKKMVTDGLYKVVHGTNKYKTGG PLASISPGISAKTGTAQTTTNGKSTVTLSLASFAPSNDPQVVVALALPGLSTSSEADNMN AAKKIYEAYWKDVQSKSSLENPTKATKESAAQNLNG >gi|269838503|gb|ACXB01000008.1| GENE 115 99970 - 102585 1574 871 aa, chain + ## HITS:1 COG:L48341 KEGG:ns NR:ns ## COG: L48341 COG4485 # Protein_GI_number: 15672817 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 3 857 4 861 883 223 25.0 1e-57 MQINNQKRDLLLSSCIPALVLLTYFIYRGFAPFGSSSLLTVDMGQQYVAFYEYFRQTILG HPGQLFYSFSNGLGSDMFGTWAYYLLSPTNLILLFFKKESITTGILIVTLVKYALAGLTA ALYLHHLARSLGRNPNRLSVAGFATSYSLMAFSIANQLNLFWLDAPILLPLIIMGIDQII ADRKLKLFVISMTAMVIINYYFAYMIGIFTVMYFLWRSPRLNWRKAWSFVQAWLAVGIFS AVTWMPTLWALLHGKANYTENALQWKFEYNPLKMVLKLFPGTFSFKQMSEGLPNIYVGMV ILIAVIAYFFNRQIKLSQRLSSLAITAIFLLSFCWSPLDLLWHAMQFPWWYAYRFSFIFS FWMMILAFWGMLYPLQNKLLAPLVTSLLGLCLILLAGIQFLPKSQDFLSNDQLILGGILF IAALLLWVGLQSTKSNPALRSIMLGLMVLDVGINAVWSLNRISYVSQSEFQTYSVAARKA LRQIQKHPADFQRIGTNYFRAKNDPIQLGFNSGASFNSNLETNSLEAMADLGQPTTSGNI TYMNGTLLSDAFLDFRSWSLVDAQPKKNPFLTRSVRHDILQRYDYFDKTRYANNYRNPYA ISLGTMTSQPVTNQLPAYRPLEYQNTIMTALGGQSKVNLFDDLTSTAQIYYSNVSTSADV RNAVLNKQKLNKGASVTFEVVPQTDDPLYITAGSQMNYHNADIFVNNQRITEDIDYDHPI VLSVADHSRGKRVRIQIVLKKSTLLVSDFGIYQLDFAKFKQLDHVAQNNQLTDVQANGNV VTGKLKATTKRPYLFTSIPYSPGWHLKVDGHAVATQKVANHFLGSADKISSGTHQWKLTY YPPLLGMGTTITLLGWLGLLIKLWWQKSRRK >gi|269838503|gb|ACXB01000008.1| GENE 116 102753 - 103238 713 161 aa, chain - ## HITS:1 COG:lin1531 KEGG:ns NR:ns ## COG: lin1531 COG0782 # Protein_GI_number: 16800599 # Func_class: K Transcription # Function: Transcription elongation factor # Organism: Listeria innocua # 1 160 1 160 160 172 65.0 3e-43 MADEKRYPMTLDGKQKLEEELETLKTETRPQVIEQIKIARSFGDLSENSEYESAKDEQSM VESRINTIEHMLHYAEIIDDEAIDSNEVSLGRVVEFQELPDEEPEEYTIVGAAEADPMSG KISNDSPIAKGLLGKKVGDVVTIATPGGDMKVKILTVKSAE >gi|269838503|gb|ACXB01000008.1| GENE 117 103255 - 103368 56 37 aa, chain - ## HITS:0 COG:no KEGG:no NR:no ADLIVPEGGENSVAIDLLVTKVRDILAHAGRDRQYNK Prediction of potential genes in microbial genomes Time: Fri May 27 06:35:27 2011 Seq name: gi|269838502|gb|ACXB01000009.1| Pediococcus acidilactici 7_4 cont1.9, whole genome shotgun sequence Length of sequence - 176197 bp Number of predicted genes - 159, with homology - 156 Number of transcription units - 70, operones - 44 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 2 - 542 637 ## COG0572 Uridine kinase 2 1 Op 2 . - CDS 558 - 1724 1306 ## COG1559 Predicted periplasmic solute-binding protein - Prom 1748 - 1807 3.9 3 2 Op 1 40/0.000 - CDS 1809 - 4241 2434 ## COG0072 Phenylalanyl-tRNA synthetase beta subunit 4 2 Op 2 1/0.333 - CDS 4248 - 5294 1238 ## COG0016 Phenylalanyl-tRNA synthetase alpha subunit - Prom 5412 - 5471 6.8 - Term 5310 - 5343 2.0 5 3 Op 1 . - CDS 5576 - 5908 267 ## COG1733 Predicted transcriptional regulators 6 3 Op 2 1/0.333 - CDS 5926 - 6435 540 ## COG1418 Predicted HD superfamily hydrolase - Prom 6461 - 6520 5.8 7 3 Op 3 . - CDS 6533 - 7303 803 ## COG0566 rRNA methylases - Prom 7339 - 7398 7.1 + Prom 7304 - 7363 6.6 8 4 Op 1 2/0.250 + CDS 7460 - 7732 294 ## COG1254 Acylphosphatases + Prom 7737 - 7796 4.0 9 4 Op 2 . + CDS 7821 - 8789 743 ## COG0706 Preprotein translocase subunit YidC + Term 8837 - 8882 13.1 - Term 8879 - 8917 -0.2 10 5 Op 1 . - CDS 8975 - 10936 1251 ## lp_3471 alpha-L-rhamnosidase (putative) (EC:3.2.1.40) 11 5 Op 2 10/0.000 - CDS 10949 - 12202 1052 ## COG0477 Permeases of the major facilitator superfamily - Prom 12263 - 12322 3.5 - Term 12396 - 12446 16.2 12 6 Op 1 40/0.000 - CDS 12461 - 13936 1305 ## COG0642 Signal transduction histidine kinase 13 6 Op 2 2/0.250 - CDS 13938 - 14624 678 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 14644 - 14703 6.1 - Term 14875 - 14921 7.4 14 7 Tu 1 . - CDS 15020 - 16438 1703 ## COG0362 6-phosphogluconate dehydrogenase - Prom 16472 - 16531 7.5 - Term 16507 - 16561 6.4 15 8 Op 1 20/0.000 - CDS 16566 - 16748 329 ## PROTEIN SUPPORTED gi|116492480|ref|YP_804215.1| 50S ribosomal protein L32 16 8 Op 2 . - CDS 16800 - 17339 421 ## COG1399 Predicted metal-binding, possibly nucleic acid-binding protein 17 8 Op 3 3/0.167 - CDS 17376 - 18491 902 ## COG1323 Predicted nucleotidyltransferase 18 8 Op 4 6/0.083 - CDS 18496 - 19236 600 ## COG0500 SAM-dependent methyltransferases 19 8 Op 5 6/0.083 - CDS 19236 - 19592 437 ## COG0799 Uncharacterized homolog of plant Iojap protein 20 8 Op 6 9/0.000 - CDS 19604 - 20212 833 ## COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism 21 8 Op 7 7/0.083 - CDS 20205 - 20846 732 ## COG1057 Nicotinic acid mononucleotide adenylyltransferase 22 8 Op 8 2/0.250 - CDS 20864 - 21175 240 ## PROTEIN SUPPORTED gi|170016752|ref|YP_001727671.1| RNA-binding protein 23 8 Op 9 6/0.083 - CDS 21224 - 22333 881 ## COG1161 Predicted GTPases 24 8 Op 10 . - CDS 22336 - 22860 525 ## COG2179 Predicted hydrolase of the HAD superfamily - Prom 22885 - 22944 7.3 - Term 23032 - 23085 8.6 25 9 Op 1 . - CDS 23110 - 23463 588 ## PROTEIN SUPPORTED gi|116492469|ref|YP_804204.1| 50S ribosomal protein L20 26 9 Op 2 . - CDS 23517 - 23717 330 ## PROTEIN SUPPORTED gi|116492468|ref|YP_804203.1| 50S ribosomal protein L35P 27 9 Op 3 . - CDS 23742 - 24242 420 ## PROTEIN SUPPORTED gi|163801060|ref|ZP_02194960.1| 50S ribosomal protein L35 - Term 24369 - 24401 -0.3 28 10 Op 1 23/0.000 - CDS 24467 - 25195 886 ## COG1346 Putative effector of murein hydrolase 29 10 Op 2 2/0.250 - CDS 25195 - 25605 528 ## COG1380 Putative effector of murein hydrolase LrgA - Prom 25786 - 25845 5.8 - Term 25820 - 25865 -0.7 30 11 Op 1 9/0.000 - CDS 25893 - 26627 824 ## COG3279 Response regulator of the LytR/AlgR family 31 11 Op 2 . - CDS 26627 - 28372 1148 ## COG3275 Putative regulator of cell autolysis - Prom 28406 - 28465 3.9 - Term 28469 - 28518 13.1 32 12 Tu 1 . - CDS 28534 - 30477 1918 ## COG0441 Threonyl-tRNA synthetase - Prom 30497 - 30556 9.2 - Term 30504 - 30539 6.0 33 13 Op 1 8/0.000 - CDS 30774 - 31703 852 ## COG1484 DNA replication protein 34 13 Op 2 6/0.083 - CDS 31707 - 33095 1225 ## COG3611 Replication initiation/membrane attachment protein 35 13 Op 3 1/0.333 - CDS 33095 - 33571 545 ## COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains 36 13 Op 4 4/0.125 - CDS 33573 - 34157 568 ## COG0237 Dephospho-CoA kinase 37 13 Op 5 4/0.125 - CDS 34186 - 35025 613 ## COG0266 Formamidopyrimidine-DNA glycosylase 38 13 Op 6 . - CDS 35041 - 37698 2275 ## COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains - Prom 37719 - 37778 4.0 - Term 37727 - 37771 6.5 39 14 Op 1 . - CDS 37797 - 38561 617 ## COG0670 Integral membrane protein, interacts with FtsH 40 14 Op 2 3/0.167 - CDS 38582 - 39913 1511 ## COG0773 UDP-N-acetylmuramate-alanine ligase 41 14 Op 3 3/0.167 - CDS 39942 - 42020 1582 ## COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins 42 14 Op 4 . - CDS 42037 - 42672 650 ## COG0073 EMAP domain - Prom 42715 - 42774 4.2 + Prom 42581 - 42640 4.3 43 15 Tu 1 . + CDS 42754 - 43080 307 ## COG5584 Predicted small secreted protein + Term 43104 - 43137 5.1 - Term 43090 - 43124 5.3 44 16 Op 1 . - CDS 43159 - 43797 593 ## COG0220 Predicted S-adenosylmethionine-dependent methyltransferase 45 16 Op 2 7/0.083 - CDS 43809 - 45008 799 ## COG4473 Predicted ABC-type exoprotein transport system, permease component 46 16 Op 3 . - CDS 45001 - 45738 261 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein - Prom 45820 - 45879 3.3 + Prom 45695 - 45754 3.9 47 17 Op 1 . + CDS 45881 - 46312 485 ## COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases 48 17 Op 2 . + CDS 46314 - 46676 302 ## PEPE_0678 hypothetical protein + Prom 46684 - 46743 6.4 49 18 Tu 1 . + CDS 46783 - 47676 1156 ## COG0760 Parvulin-like peptidyl-prolyl isomerase + Term 47731 - 47775 4.4 - Term 47793 - 47853 17.1 50 19 Op 1 3/0.167 - CDS 47906 - 48853 991 ## COG3481 Predicted HD-superfamily hydrolase 51 19 Op 2 5/0.125 - CDS 48869 - 51436 2386 ## COG4717 Uncharacterized conserved protein 52 19 Op 3 2/0.250 - CDS 51439 - 52650 917 ## COG0420 DNA repair exonuclease - Prom 52752 - 52811 4.8 - Term 52778 - 52826 -0.4 53 20 Op 1 . - CDS 52827 - 53171 480 ## COG3679 Uncharacterized conserved protein 54 20 Op 2 . - CDS 53235 - 55382 1839 ## COG0744 Membrane carboxypeptidase (penicillin-binding protein) - Prom 55413 - 55472 2.6 55 21 Op 1 . - CDS 55595 - 56059 495 ## COG1438 Arginine repressor 56 21 Op 2 . - CDS 56079 - 56750 545 ## COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases - Prom 56868 - 56927 8.2 - Term 56947 - 56978 2.5 57 22 Op 1 . - CDS 57008 - 58696 1643 ## COG0018 Arginyl-tRNA synthetase - Prom 58867 - 58926 6.8 - Term 58711 - 58752 7.2 58 22 Op 2 . - CDS 58944 - 59804 786 ## COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) - Prom 60016 - 60075 74.0 + TRNA 59999 - 60069 64.8 # Gly CCC 0 0 - Term 60309 - 60345 6.7 59 23 Op 1 . - CDS 60387 - 61040 400 ## FMG_1604 Crp/FNR family transcriptional regulator 60 23 Op 2 11/0.000 - CDS 61064 - 62875 1573 ## COG0526 Thiol-disulfide isomerase and thioredoxins 61 23 Op 3 . - CDS 62887 - 64074 1077 ## COG0492 Thioredoxin reductase 62 23 Op 4 . - CDS 64067 - 65539 1366 ## COG1757 Na+/H+ antiporter - Prom 65658 - 65717 6.4 - Term 65673 - 65706 2.5 63 24 Op 1 . - CDS 65777 - 66073 245 ## LSEI_1048 hypothetical protein 64 24 Op 2 . - CDS 66075 - 66320 205 ## PEPE_0120 hypothetical protein - Prom 66344 - 66403 7.5 - Term 66408 - 66453 9.2 65 25 Tu 1 . - CDS 66541 - 67986 1432 ## COG0531 Amino acid transporters - Prom 68031 - 68090 7.9 + Prom 68053 - 68112 10.1 66 26 Tu 1 . + CDS 68285 - 68623 456 ## COG1396 Predicted transcriptional regulators + Term 68684 - 68728 11.5 - Term 68670 - 68716 7.1 67 27 Op 1 4/0.125 - CDS 68921 - 70384 1263 ## COG4468 Galactose-1-phosphate uridyltransferase 68 27 Op 2 2/0.250 - CDS 70399 - 71388 1073 ## COG1087 UDP-glucose 4-epimerase 69 27 Op 3 . - CDS 71444 - 72607 1266 ## COG0153 Galactokinase - Prom 72642 - 72701 6.5 + Prom 72794 - 72853 6.0 70 28 Op 1 . + CDS 72887 - 74767 1177 ## COG3250 Beta-galactosidase/beta-glucuronidase 71 28 Op 2 . + CDS 74751 - 75710 814 ## COG3250 Beta-galactosidase/beta-glucuronidase + Term 75747 - 75791 10.0 - Term 75868 - 75909 3.3 72 29 Tu 1 . - CDS 75923 - 77866 1708 ## COG2211 Na+/melibiose symporter and related transporters - Prom 77953 - 78012 7.7 - Term 78123 - 78182 14.1 73 30 Op 1 . - CDS 78288 - 79316 310 ## PROTEIN SUPPORTED gi|15900011|ref|NP_344615.1| aldose 1-epimerase - Prom 79351 - 79410 9.8 - Term 79395 - 79454 6.2 74 30 Op 2 1/0.333 - CDS 79477 - 80472 797 ## COG1609 Transcriptional regulators - Prom 80626 - 80685 6.5 - Term 80635 - 80679 4.2 75 31 Op 1 1/0.333 - CDS 80718 - 82832 1680 ## COG3711 Transcriptional antiterminator - Term 82848 - 82890 1.7 76 31 Op 2 13/0.000 - CDS 82901 - 83617 715 ## COG0176 Transaldolase 77 31 Op 3 . - CDS 83617 - 85593 1870 ## COG0021 Transketolase 78 31 Op 4 11/0.000 - CDS 85617 - 86975 1508 ## COG3037 Uncharacterized protein conserved in bacteria 79 31 Op 5 13/0.000 - CDS 87000 - 87296 180 ## PROTEIN SUPPORTED gi|148984431|ref|ZP_01817719.1| PTS system, IIB component, putative 80 31 Op 6 . - CDS 87293 - 87745 483 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) - Prom 87771 - 87830 7.6 - Term 87862 - 87892 1.2 81 32 Op 1 3/0.167 - CDS 87899 - 88750 520 ## COG1262 Uncharacterized conserved protein 82 32 Op 2 . - CDS 88760 - 90217 737 ## COG3119 Arylsulfatase A and related enzymes 83 32 Op 3 13/0.000 - CDS 90232 - 91050 451 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 84 32 Op 4 . - CDS 91037 - 91858 632 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC - Prom 91905 - 91964 7.6 + Prom 91935 - 91994 10.6 85 33 Tu 1 . + CDS 92020 - 93006 637 ## COG1609 Transcriptional regulators + Term 93018 - 93081 12.2 - Term 93006 - 93068 12.0 86 34 Tu 1 . - CDS 93072 - 93788 477 ## EF0454 hypothetical protein - Prom 93894 - 93953 12.7 + Prom 93890 - 93949 5.7 87 35 Tu 1 . + CDS 94087 - 94689 260 ## COG3464 Transposase and inactivated derivatives + Prom 95042 - 95101 2.0 88 36 Tu 1 . + CDS 95178 - 95381 70 ## gi|270290498|ref|ZP_06196723.1| transposase - Term 95306 - 95352 6.2 89 37 Op 1 2/0.250 - CDS 95460 - 97415 1468 ## COG3533 Uncharacterized protein conserved in bacteria 90 37 Op 2 . - CDS 97438 - 98844 883 ## COG2211 Na+/melibiose symporter and related transporters - Prom 98973 - 99032 9.7 + Prom 98930 - 98989 9.9 91 38 Op 1 . + CDS 99121 - 100080 290 ## COG2207 AraC-type DNA-binding domain-containing proteins 92 38 Op 2 . + CDS 100077 - 100274 190 ## + Term 100417 - 100460 8.6 - Term 100400 - 100454 14.6 93 39 Op 1 5/0.125 - CDS 100534 - 101838 1160 ## COG3538 Uncharacterized conserved protein 94 39 Op 2 . - CDS 101844 - 104477 1645 ## COG0383 Alpha-mannosidase 95 39 Op 3 . - CDS 104506 - 105843 1000 ## COG1455 Phosphotransferase system cellobiose-specific component IIC + Prom 105836 - 105895 5.4 96 40 Tu 1 . + CDS 106012 - 106725 517 ## COG2188 Transcriptional regulators + Term 106735 - 106791 12.0 - Term 106728 - 106771 3.2 97 41 Op 1 4/0.125 - CDS 106794 - 107213 349 ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA 98 41 Op 2 13/0.000 - CDS 107228 - 108025 431 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 99 41 Op 3 13/0.000 - CDS 108015 - 108815 618 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 100 41 Op 4 . - CDS 108842 - 110062 995 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB - Prom 110240 - 110299 8.8 - Term 110458 - 110501 2.0 101 42 Op 1 . - CDS 110527 - 111822 881 ## COG0477 Permeases of the major facilitator superfamily 102 42 Op 2 . - CDS 111832 - 114066 1234 ## PEPE_0550 pyridine nucleotide-disulphide oxidoreductase - Prom 114122 - 114181 4.7 + Prom 114093 - 114152 6.2 103 43 Tu 1 . + CDS 114176 - 114928 641 ## COG2207 AraC-type DNA-binding domain-containing proteins - Term 114926 - 114983 11.2 104 44 Op 1 1/0.333 - CDS 115001 - 115861 325 ## PROTEIN SUPPORTED gi|116517028|ref|YP_816079.1| glucokinase 105 44 Op 2 1/0.333 - CDS 115862 - 117247 1149 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase 106 44 Op 3 . - CDS 117247 - 118062 546 ## COG1737 Transcriptional regulators 107 44 Op 4 1/0.333 - CDS 118067 - 120682 1803 ## COG0383 Alpha-mannosidase - Prom 120705 - 120764 2.9 - Term 120710 - 120748 4.0 108 45 Op 1 7/0.083 - CDS 120767 - 121213 404 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) 109 45 Op 2 . - CDS 121238 - 122749 1804 ## COG1299 Phosphotransferase system, fructose-specific IIC component - Prom 122822 - 122881 4.8 - Term 122902 - 122941 6.1 110 46 Op 1 5/0.125 - CDS 122960 - 123778 907 ## COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases 111 46 Op 2 1/0.333 - CDS 123803 - 125074 1152 ## COG4806 L-rhamnose isomerase 112 46 Op 3 4/0.125 - CDS 125098 - 125412 440 ## COG3254 Uncharacterized conserved protein 113 46 Op 4 6/0.083 - CDS 125428 - 126885 1413 ## COG1070 Sugar (pentulose and hexulose) kinases 114 46 Op 5 . - CDS 126911 - 128176 1228 ## COG0477 Permeases of the major facilitator superfamily - Prom 128423 - 128482 6.0 + Prom 128196 - 128255 7.0 115 47 Tu 1 . + CDS 128295 - 129269 659 ## COG2207 AraC-type DNA-binding domain-containing proteins + Prom 129327 - 129386 5.2 116 48 Tu 1 . + CDS 129421 - 130542 966 ## COG1062 Zn-dependent alcohol dehydrogenases, class III + Term 130572 - 130614 4.0 - Term 130552 - 130606 10.0 117 49 Op 1 . - CDS 130628 - 131266 261 ## PEPE_1706 hypothetical protein - Prom 131313 - 131372 4.2 - Term 131299 - 131340 5.2 118 49 Op 2 . - CDS 131445 - 132041 573 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs - Prom 132184 - 132243 7.4 + Prom 132216 - 132275 6.0 119 50 Tu 1 . + CDS 132436 - 133605 1131 ## COG1454 Alcohol dehydrogenase, class IV - Term 133611 - 133661 8.1 120 51 Op 1 1/0.333 - CDS 133684 - 133944 366 ## COG1937 Uncharacterized protein conserved in bacteria 121 51 Op 2 3/0.167 - CDS 133945 - 134238 264 ## COG0607 Rhodanese-related sulfurtransferase 122 51 Op 3 3/0.167 - CDS 134225 - 135889 1216 ## COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases 123 51 Op 4 . - CDS 135891 - 136202 193 ## COG0607 Rhodanese-related sulfurtransferase - Prom 136303 - 136362 4.7 - Term 136326 - 136367 7.7 124 52 Op 1 . - CDS 136436 - 137020 336 ## COG2249 Putative NADPH-quinone reductase (modulator of drug activity B) 125 52 Op 2 . - CDS 137020 - 137559 425 ## LJ0242 hypothetical protein - Prom 137600 - 137659 6.2 - Term 137628 - 137679 14.2 126 53 Op 1 . - CDS 137734 - 138171 375 ## COG4154 Fucose dissimilation pathway protein FucU 127 53 Op 2 21/0.000 - CDS 138174 - 138554 258 ## COG0477 Permeases of the major facilitator superfamily 128 53 Op 3 6/0.083 - CDS 138563 - 139510 760 ## COG0477 Permeases of the major facilitator superfamily 129 53 Op 4 4/0.125 - CDS 139513 - 141015 1253 ## COG1070 Sugar (pentulose and hexulose) kinases 130 53 Op 5 . - CDS 141029 - 142816 1523 ## COG2407 L-fucose isomerase and related proteins - Prom 142874 - 142933 3.6 - Term 142986 - 143012 1.0 131 54 Tu 1 . - CDS 143033 - 143788 594 ## COG1349 Transcriptional regulators of sugar metabolism - Prom 143947 - 144006 6.3 + Prom 143873 - 143932 5.0 132 55 Tu 1 . + CDS 143974 - 144549 645 ## COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases + Term 144740 - 144777 2.5 133 56 Tu 1 . - CDS 144858 - 145760 478 ## COG3325 Chitinase - Prom 145913 - 145972 6.8 + Prom 145891 - 145950 6.0 134 57 Op 1 . + CDS 145995 - 147311 1002 ## COG1455 Phosphotransferase system cellobiose-specific component IIC 135 57 Op 2 . + CDS 147327 - 148604 839 ## COG3669 Alpha-L-fucosidase - Term 148604 - 148656 1.1 136 58 Op 1 . - CDS 148723 - 150300 1200 ## lp_3473 alpha-L-rhamnosidase (putative) (EC:3.2.1.40) 137 58 Op 2 . - CDS 150307 - 151572 1081 ## COG0477 Permeases of the major facilitator superfamily - Prom 151682 - 151741 9.1 + Prom 151575 - 151634 6.8 138 59 Tu 1 . + CDS 151692 - 152684 666 ## COG2207 AraC-type DNA-binding domain-containing proteins + Term 152695 - 152742 9.5 - Term 152677 - 152738 14.6 139 60 Op 1 . - CDS 152822 - 154249 1522 ## COG4690 Dipeptidase 140 60 Op 2 . - CDS 154274 - 154627 374 ## PEPE_0169 hypothetical protein 141 60 Op 3 . - CDS 154620 - 156554 2092 ## COG1297 Predicted membrane protein - Prom 156615 - 156674 7.1 + Prom 156388 - 156447 7.0 142 61 Tu 1 . + CDS 156615 - 156782 146 ## + Term 156800 - 156849 3.0 - Term 156675 - 156720 0.3 143 62 Tu 1 . - CDS 156737 - 158080 1461 ## COG0531 Amino acid transporters - Prom 158107 - 158166 8.3 144 63 Tu 1 . + CDS 158062 - 158247 64 ## - Term 158113 - 158151 7.6 145 64 Op 1 1/0.333 - CDS 158188 - 159240 1272 ## COG1171 Threonine dehydratase 146 64 Op 2 . - CDS 159290 - 160396 1250 ## COG0686 Alanine dehydrogenase - Prom 160519 - 160578 6.3 - Term 160734 - 160782 13.7 147 65 Op 1 5/0.125 - CDS 160806 - 162230 1644 ## COG2160 L-arabinose isomerase 148 65 Op 2 3/0.167 - CDS 162264 - 162992 808 ## COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases 149 65 Op 3 6/0.083 - CDS 163007 - 164602 1534 ## COG1070 Sugar (pentulose and hexulose) kinases 150 65 Op 4 4/0.125 - CDS 164622 - 165992 1526 ## COG0477 Permeases of the major facilitator superfamily - Prom 166044 - 166103 6.1 - Term 166120 - 166164 12.5 151 66 Tu 1 . - CDS 166189 - 167160 1039 ## COG1609 Transcriptional regulators - Prom 167297 - 167356 7.3 + Prom 167374 - 167433 6.0 152 67 Tu 1 . + CDS 167469 - 168500 998 ## COG2017 Galactose mutarotase and related enzymes + Term 168518 - 168565 11.2 + Prom 168719 - 168778 6.1 153 68 Op 1 . + CDS 168808 - 169656 866 ## LC705_00065 hypothetical protein 154 68 Op 2 . + CDS 169660 - 170106 328 ## LC705_00064 hypothetical protein 155 68 Op 3 . + CDS 170124 - 171422 983 ## COG0402 Cytosine deaminase and related metal-dependent hydrolases + Term 171463 - 171504 -0.4 - Term 171553 - 171599 6.6 156 69 Op 1 7/0.083 - CDS 171654 - 173087 1473 ## COG1299 Phosphotransferase system, fructose-specific IIC component 157 69 Op 2 5/0.125 - CDS 173113 - 173565 540 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) 158 69 Op 3 . - CDS 173569 - 175488 1237 ## COG3711 Transcriptional antiterminator - Prom 175634 - 175693 8.9 - Term 175643 - 175686 9.6 159 70 Tu 1 . - CDS 175708 - 176121 208 ## PEPE_1706 hypothetical protein Predicted protein(s) >gi|269838502|gb|ACXB01000009.1| GENE 1 2 - 542 637 180 aa, chain - ## HITS:1 COG:BH1275 KEGG:ns NR:ns ## COG: BH1275 COG0572 # Protein_GI_number: 15613838 # Func_class: F Nucleotide transport and metabolism # Function: Uridine kinase # Organism: Bacillus halodurans # 7 180 5 178 211 215 64.0 3e-56 MSTKNSPIIIGVTGGSGSGKTTVSKKILEQLDGHSISIIQQDSYYKDQAGMTMEERRAVN YDHPLAFDSDLLYQHLKMLKQRQAIDVPVYDYTISTRSPEVIHQEPTDVVILEGILILSD ERIRDMLDIKVYVDTDDDIRIIRRIERDTQERGRSLESIITQYLTGVKPMYHQFIEPTKR >gi|269838502|gb|ACXB01000009.1| GENE 2 558 - 1724 1306 388 aa, chain - ## HITS:1 COG:SPy0348 KEGG:ns NR:ns ## COG: SPy0348 COG1559 # Protein_GI_number: 15674503 # Func_class: R General function prediction only # Function: Predicted periplasmic solute-binding protein # Organism: Streptococcus pyogenes M1 GAS # 12 383 142 518 524 252 39.0 7e-67 MNNNSNDSNQSRRRRTDNSHANKNSHQIIKWVISILAVVIIITTFMGYRYYSSSLKPLNP QSNKQIEVNIPIGSTAREVGSILEKKQVVKSGAVFNYYTKKQKLNNFQAGYYVLKPSMTL KQIATKLEKGGAAEPIALNGPRILIKEGENIDQIADSIAKDSKYFTKKDFLKLMKDESFI KQLAKKYPKLLGSAMDAQGVRYRLEGYLFPANYSVSKDTSLKDVVTQMVAKEDAVLQPYY GKIKEKGLTVQQTLSIASLVEMEGSKASDRTKIAGVFLNRIKQGETLGSDVSTRYAVKKS ATENLTASDLANPSPYNTRVSTGYMPGPVDNPGENSILSVINADTKDGYLYFFAVTKKTG GHKVGDVLFYKDFDQFNNDVAKYNPEGK >gi|269838502|gb|ACXB01000009.1| GENE 3 1809 - 4241 2434 810 aa, chain - ## HITS:1 COG:SP0581_2 KEGG:ns NR:ns ## COG: SP0581_2 COG0072 # Protein_GI_number: 15900491 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Phenylalanyl-tRNA synthetase beta subunit # Organism: Streptococcus pneumoniae TIGR4 # 152 810 2 655 655 553 45.0 1e-157 MKLSYQWLSKYLDLSNIEPQDLAEKIERTAVEVDSVTRLDYKLKKIVVGHTLEVVDHPDS DHLHICQVDVGEEEPIQIVCGAPNIAADQDVIVALHGSRIKDNVKIKRSKMRGVPSNGMI CALQEIGFPDSVVPKKYVDGIYVFPADSNVHPGDSVMEVLGMNDDVIDTSVTPNRGDMFS MNGNAHEIAAILDQTAQFEAVPEVTSVTDAKLSDQIKVEIADDQLAPVYKMRGIDQVKVT DSPFWLQTLLMKVGIRPINNVVDVTNYVMLKYGQPLHAYDLDQLQGKTVGVAKAEADTSF TTLDGEERQLRDEDLVVTADGQPIALAGVMGGLTSEVEPTTSRVVLEAAIFDPIKVRKTA RFHNLHSEASMRFERGIDYGAVTDALNEAVALINEFGKGQAYPDEVVGAATTKEPAKVAI TLAKINRVLGTTLTISEVEAIFARLGFAVTTDENAETFEVTVPVRRWDIHLQADLLEEIA RIYGYDNLPVTLPTGAPTVGQLTEKQKIMRNSRQILEGLGLTQAMSYGLTTVAKSQNFLK QTTEPVKVAWPMTLDHEALRMNLVSGLLDDVAYNHARFVDDVALYEQGRVFYSVEGQAQP REVEHLAGAITGSLQATTWNQPQQNVSFFDAKGIVEKYLQNMALEGQIKYVADQDRKGMH PGRTADIYLDDQLIGFVGQVHPTTAQEYKINETYVFELNLSKIIDAPKQMQHYEVISKYP AITRDVALLVAEEVTNEQVLDVIQGTKQKYLTDVKLFDVYAGNHLDAGTKSLAYQLTYQD RNATLQEDTVNQEFAKVVEQLETQLGATIR >gi|269838502|gb|ACXB01000009.1| GENE 4 4248 - 5294 1238 348 aa, chain - ## HITS:1 COG:BS_pheS KEGG:ns NR:ns ## COG: BS_pheS COG0016 # Protein_GI_number: 16079916 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Phenylalanyl-tRNA synthetase alpha subunit # Organism: Bacillus subtilis # 3 346 1 343 344 475 64.0 1e-134 MGLQDKLKELEEKGLQEIKVTDELSKLNKIRVNLLGKKGPLTEILRGMRDLSKEERPKVG QYANQIRDNLKEQIEARKAELEQAALDRQLASETLDVTLPGSPVRQGQPHVIQQIIDNLE DLFLGMGYQIVEGPEVELDRYNFEMLNLPKDHPARDMQDTFYLTDEVLMRSQTSPVQART MEKHDFSKGPLKMISPGVVYRRDTDDATHSHQFHQIEGLVIDKNITMGDLKGTLITMAKE LFGDRFEVRLRPSYFPFTEPSVEADVTCFNCMGKGCSVCKNTGWIEVLGAGMVHPNVLKM AGVDPEEYGGFAFGLGPDRFAMLRYGVDDIRNFYLNDVRFLSQFDKRG >gi|269838502|gb|ACXB01000009.1| GENE 5 5576 - 5908 267 110 aa, chain - ## HITS:1 COG:BH0508 KEGG:ns NR:ns ## COG: BH0508 COG1733 # Protein_GI_number: 15613071 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus halodurans # 14 109 6 101 102 92 47.0 2e-19 MQNVHQKTPTDFELCPKFEHLFDILGKKWNGLILEVLASAGPQRFRDLSRSVTKCSDRVL VERLKNLEEEGLVERCTYQDSSLIEYRLTEEGEGLRPVLEAAHKFADCWY >gi|269838502|gb|ACXB01000009.1| GENE 6 5926 - 6435 540 169 aa, chain - ## HITS:1 COG:L179243 KEGG:ns NR:ns ## COG: L179243 COG1418 # Protein_GI_number: 15673720 # Func_class: R General function prediction only # Function: Predicted HD superfamily hydrolase # Organism: Lactococcus lactis # 6 145 8 146 170 162 60.0 3e-40 MKVLDWENDAQYLDLVGDLLETDEVQRLKNYTQHHNGTRLDHCIRVSYESYLLAKKFHLD VRSTARAGLLHDLFYYDWRTTKFTLGTHAFIHPRVALRNAEKITTLNDKEKDIILKHMWG ATIARPKYAESSIVSLVDDAQAVSEYTDHVRKNLRLKLLEYKNKVIKLI >gi|269838502|gb|ACXB01000009.1| GENE 7 6533 - 7303 803 256 aa, chain - ## HITS:1 COG:lin1181 KEGG:ns NR:ns ## COG: lin1181 COG0566 # Protein_GI_number: 16800250 # Func_class: J Translation, ribosomal structure and biogenesis # Function: rRNA methylases # Organism: Listeria innocua # 2 254 1 250 252 199 41.0 4e-51 MLEKISSVKNSKVKEWVKLKTNNGRKKYRRFFLEGRHPVETALVEERQYEYLIVEEGFDL ASLEANVDEDKLIVVTKEVSKHIADTVHEQGIFLIGYVEDAVYEMPNDTTGQWLLLDNVQ DPGNIGTMVRTADAAGFTGVIFGSGTADFYNPKILRAMQGSQYHLQLKRLNLQKWIEACH QAHQAVYGSILDEHAQSYRDIDAPKDFSLIMGNEGNGMSPELVKATDCNLYIPIKGNAES LNVAVAAGVLMFGLVS >gi|269838502|gb|ACXB01000009.1| GENE 8 7460 - 7732 294 90 aa, chain + ## HITS:1 COG:lin1418 KEGG:ns NR:ns ## COG: lin1418 COG1254 # Protein_GI_number: 16800486 # Func_class: C Energy production and conversion # Function: Acylphosphatases # Organism: Listeria innocua # 6 90 8 93 93 70 44.0 1e-12 MQAVHMHVVGRVQGVGFRFMTKHLADQLKITGWVKNSLDGSVEIEAQGPNEILKQFIQGV KASPSPSGRVDKLVVKEIPSFQAREFLVKY >gi|269838502|gb|ACXB01000009.1| GENE 9 7821 - 8789 743 322 aa, chain + ## HITS:1 COG:SPy0351 KEGG:ns NR:ns ## COG: SPy0351 COG0706 # Protein_GI_number: 15674505 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YidC # Organism: Streptococcus pyogenes M1 GAS # 4 319 5 305 307 235 41.0 7e-62 MKKIKRISTISLIAGLGLVLSGCVQRDSHGRPYGFIYDNLAVPMQHFMDYLSHLVGGSYG LAIILITFVVRLILLPLMVNQSRKATVQQEKMSYIQPQLKVLQERNQTAKTPEEKAAVSQ EMMALYRDNNISMTGGIGCLPLLIQFPVFAALYAAIQYSPELHQGIFLGIDLSKSSLLLS IISFLVYLLQGWLGTLGVPEEQRKTMRSMMVISPLMILFFTFSTPAGLGLYFAVGGVFAC IQTLLINFYRPRIRAQIHEEMKKNPPKIIKPAGPVDLDNADASDAVKPTETAPQTATTKT TTNSTKKNVNHQRNAGKQRHHH >gi|269838502|gb|ACXB01000009.1| GENE 10 8975 - 10936 1251 653 aa, chain - ## HITS:1 COG:no KEGG:lp_3471 NR:ns ## KEGG: lp_3471 # Name: ram1 # Def: alpha-L-rhamnosidase (putative) (EC:3.2.1.40) # Organism: L.plantarum # Pathway: not_defined # 3 652 6 652 652 779 55.0 0 MNQTYWIWYPGDFAIHQGMLQNFSREERGMQWPAYWYLEDCYRNVKFLKTYQLKNATSFM VRSHQPGYVTVNEQKYSLNEPINLTAGEQQIVIYVFSAKDLPCVYVAGAEIYSDASWVAS NYIQERPVGWSAMFTSNTDDPNQIPYRCRETFPKQIVERAGGKLIDFGREINATVRFTKL SHPIQVCYGESVAEALDTVNCYYQQRDVRENEELPKRAFRYLFISDYPDGQLEAVATQID LPMQNHGIFKSDDPLLNQIWQVSLRTFKLCSDLFFIDGIKRDRWIWGGDAYQDNFINQYS FFNEEVDRRTILALRGHDEVRQHINTIVDYSLLWIINIYNHYEMSGDRNFLQMIMPRMEK MMDYLLAQTNSLGFIIGRPQDWIFVDWSPIDKEGPVAAEQMFLLQALKAMTVTKKVLGKT ADAQHYQQRFDQLKQNVWKYFWDEASGAFIDSYESKRRHVTRHANILAVLFAVADRRQQQ LILERVLLNDRVKALTTPYFKFFEQDALCKLGQYDQVYQTIKEYWGAMVEKGATTVWEEY DPQESGDAQYAMYGDPFGKSLCHAWGASPVYLLGRYFFGLRPTQAGYATFEIQPHLAYFQ KLHGQLPIKDGLVHFKVNRGQLTITCDRNGGTVISQGKRIPLLANQPVVIPIA >gi|269838502|gb|ACXB01000009.1| GENE 11 10949 - 12202 1052 417 aa, chain - ## HITS:1 COG:SSO1305 KEGG:ns NR:ns ## COG: SSO1305 COG0477 # Protein_GI_number: 15898146 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Sulfolobus solfataricus # 8 382 15 400 463 148 26.0 2e-35 MGEQVTPKMDRKTFSLVLVAGTASYLDSSLLVSLGVALPIWTRIMHLSPLLSGLISTLLT LMVALGAVVGGWLADRFGRVRVFNLDILFVAVGAIIIAFAPNLPILLTGTIVAGIASGAD LPTSLAVISERTSDAMYGRAITITQIFWTVGILLSQFLGFLTSAMTVGSVRVIFSVIALV ALVNWSVRVFSPKFKRVEDSLVDDQKATFNSQNGQQRVKLGEILKNPAYLKILVALTMFY LFWNLPANTWGSFVNYFLVTVSHRTQAFATLVALIANVFNLASNSIYVKVADTKYRYPVM EGAILIGAVSFFCAGVWSDVWWAFAIAYVCYSATNTLCGEPIYKIWTQTFYPVEVRASIT GFSYGFVRLCTAIFSLFTPTLMAWSVQNFLWIIFACALISGVFAIGIVQMLRHRKTR >gi|269838502|gb|ACXB01000009.1| GENE 12 12461 - 13936 1305 491 aa, chain - ## HITS:1 COG:lin1415 KEGG:ns NR:ns ## COG: lin1415 COG0642 # Protein_GI_number: 16800483 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 12 483 12 479 483 295 37.0 1e-79 MLKQAIRNQRVSLKWKWAIGTGVGVLIIFGLFSFFLFKILTGSLYSVERHNVENTISQVN DRLRSAQVINYQTTNIFRPNFNEKSTEHQHRVFDDNLLANLTRKDLAVTIYDLNGKTVFS NQRNPLQMKKVSHRVVKHQKYHGQKIIVGQAPIINRNKQKIGYVEVVNLLRDYGRNYHRL IWLFGLTSLLVFMIISIFGYGLASYLLRPMRSINVTMRELEKDPQTESRVPVLNTNDELE DLSQQFNSMIDRMQRYIDQQRQFVEDVSHELRTPVAVVEGHLKMLKRWGKDDPQVLEESI ESSLEETQRMKSLVSEMLDLTRADQIEINYPNEKTNVARLVNQVFNDFKMIHPEFQFTMD NELIGEPIVQIYRNHLEQILVILLDNAVKYSRERKEIHLSIANTKQFVEIAVQDFGEGIS EKDLKLVFNRFYRIDKARSRDQGGNGLGLSIAKKLIEEYHGTISLESSVGSGSVFKIELP ILQNPGYDQNY >gi|269838502|gb|ACXB01000009.1| GENE 13 13938 - 14624 678 228 aa, chain - ## HITS:1 COG:lin1414 KEGG:ns NR:ns ## COG: lin1414 COG0745 # Protein_GI_number: 16800482 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Listeria innocua # 1 228 1 226 226 285 72.0 7e-77 MSKILIIEDEKSLARFVELELQHEGYETEVQGNGRTGLEAALSEDFDAILLDLMLPEING IEVCRRIRREKITPIIMMTARDSIIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRQVD LEEQDTSFHQTTVEFKDIVIEKENRVVKRNNEVINLTKREYELLLLLMENVNVVQSRETL LSKVWGLEDGVETNVVDVYIRYLRNKIDVAGQPSYIQTVRGTGYVMRT >gi|269838502|gb|ACXB01000009.1| GENE 14 15020 - 16438 1703 472 aa, chain - ## HITS:1 COG:L0046 KEGG:ns NR:ns ## COG: L0046 COG0362 # Protein_GI_number: 15672604 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphogluconate dehydrogenase # Organism: Lactococcus lactis # 1 471 1 471 472 705 72.0 0 MDKPQIGVIGMAVMGKNLALNIESRGYTVAIYNRTAAKTKQVMEDHSDKKLVPSYTIEDF VNSLEKPRRIMMMVKAGKPTDAVIAELLPLLDKGDVLIDGGNTYFEDTMRRNKQLDESGI NFIGTGVSGGELGALQGPSMMPGGQKEAYDLVAPIFEQIAAKAKDGEPCVTYIGPNGAGH YVKMVHNGIEYGDEQLIDESYDLMRKMVGLSVEEIADIFAEWNKGELDSYLIDITADILT RKDDLGSDKPIVDMIMDKGGNKGTGKWSSQNALELGVPQSLITESVYARYISVLKDERVA ASKELTGPNPKLDVDKQEIVEKIRQALYFSKIMSYAQGFEQMRVASKHYDWNLNFGEIAK IWRAGCIIRAQFLQNITDAFDKNPELSNLLMDDYFQEIAKKYQDAVREVVALAVKAGIPV PAFSAAVAYYDSYRSEVLPANLLQAQRDYFGAHTYERVDRDGIFHYSWYEEQ >gi|269838502|gb|ACXB01000009.1| GENE 15 16566 - 16748 329 60 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116492480|ref|YP_804215.1| 50S ribosomal protein L32 [Pediococcus pentosaceus ATCC 25745] # 1 60 1 60 60 131 100 2e-29 MAVPARRTSKTRKRNRRGHIKLTTPGLAPCPNCGELRVSHRVCPSCGYYNGKQVIDVKAN >gi|269838502|gb|ACXB01000009.1| GENE 16 16800 - 17339 421 179 aa, chain - ## HITS:1 COG:L39365 KEGG:ns NR:ns ## COG: L39365 COG1399 # Protein_GI_number: 15673577 # Func_class: R General function prediction only # Function: Predicted metal-binding, possibly nucleic acid-binding protein # Organism: Lactococcus lactis # 1 165 1 164 176 90 33.0 2e-18 MEWYFTELRKHKEPFQFDETMDLEQSLIERFPDVVLKCSPINFKGTVTNDRDSVMIDAEI SCDLTVPSSRSLTPVHLKLDFFVNEIYVDSASLIDTFPQEEVVMLVKDDVIDVDKLVEDN VVLQVPMQVLTPDEEQKGTMPSGAEWQVVSEVAAESEQDKQVDPRLAKLKDLLKDNSDQ >gi|269838502|gb|ACXB01000009.1| GENE 17 17376 - 18491 902 371 aa, chain - ## HITS:1 COG:lin2155 KEGG:ns NR:ns ## COG: lin2155 COG1323 # Protein_GI_number: 16801221 # Func_class: R General function prediction only # Function: Predicted nucleotidyltransferase # Organism: Listeria innocua # 1 351 1 376 391 201 35.0 2e-51 MRACAVIAEFNPFHNGHQYLLKTARKTSQADVMIVIMSGNFVQRGEPALINKWERAAVAL QSGADLVVEMPTEYAVAAARDFAQAGVQIAQWLRADALAFGCETPGLDFQAQSRLLDRTF SEQDYNQSFASQLFAESSLSRSNDILGVNYAYWQLRLAPKLTLLPVERLQAGHLDQEIKG TIASATAIRQSIQRNDAQYQQAVPDRMKKVLERQKPVDWQAFWPFLEYRLKTTSAKELRQ IRGINEGIENRILAQAAQSSSFMELMTNLKTKRYSYTSLQRKLTAILLNLRVLSPLQKTR LLAVNAQGQAYLREHDFRGVLMTKVTKADFTASYQLTKRADELYQMVAPYEWGRTPILEK NVKEKTLTKKS >gi|269838502|gb|ACXB01000009.1| GENE 18 18496 - 19236 600 246 aa, chain - ## HITS:1 COG:L28696 KEGG:ns NR:ns ## COG: L28696 COG0500 # Protein_GI_number: 15672211 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Lactococcus lactis # 1 246 2 244 244 194 41.0 1e-49 MIYQSFAVLYDQLFDEEQYQNWFEYTKQQVDLNQTHEWLELACGAGRLAVKLAKQRQKVT GFDLSSEMLALAEQHAYSAKVPLELVQGNMLDLAELPTYDVISCYADSFCYLANEIELLT AFTQVHDHLKEGGQFIFDVITPYQTGEVYPGYMFNYQDDQQAFLWTSYAGEDQYHVEHDL TFFTKQDPTSEAFYRTEETHFERTYELDTYVGLLQKAGFSVVKYFADFGNAPVDEQTTRW FFSCRR >gi|269838502|gb|ACXB01000009.1| GENE 19 19236 - 19592 437 118 aa, chain - ## HITS:1 COG:lin1521 KEGG:ns NR:ns ## COG: lin1521 COG0799 # Protein_GI_number: 16800589 # Func_class: S Function unknown # Function: Uncharacterized homolog of plant Iojap protein # Organism: Listeria innocua # 1 113 1 113 118 117 53.0 4e-27 MDNKQSLELVVKAADSKRAEGIIALDVHEISTLADYFVITSADSNRQVAAIADAIIEKAK ENDVEIRRIEGYRAAEWILIDLGDIVINVFQTDQRKFYNLEKLWSEAKNVEIADWITE >gi|269838502|gb|ACXB01000009.1| GENE 20 19604 - 20212 833 202 aa, chain - ## HITS:1 COG:SPy0309 KEGG:ns NR:ns ## COG: SPy0309 COG1713 # Protein_GI_number: 15674476 # Func_class: H Coenzyme transport and metabolism # Function: Predicted HD superfamily hydrolase involved in NAD metabolism # Organism: Streptococcus pyogenes M1 GAS # 6 202 1 196 197 175 44.0 6e-44 MSKVELTYENNYIPMNREELVAAVQKSVQGPRFDHILRVEQKAIELAKQNDADVEKASIA ALLHDYAKNRPDSEFIGYINKLQLDPILLDYGNAIWHGVVGAEIVKNELKIQDEEILNAI RRHTVGAPYMTLIDQIVFMADYIEDGRDFDWVQQARIITEQSLPKGVALQMKNTLAYLVA NNRPVFPATIDSYNAWIAKLND >gi|269838502|gb|ACXB01000009.1| GENE 21 20205 - 20846 732 213 aa, chain - ## HITS:1 COG:SP1747 KEGG:ns NR:ns ## COG: SP1747 COG1057 # Protein_GI_number: 15901579 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinic acid mononucleotide adenylyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 17 212 14 209 209 215 52.0 4e-56 MISTNSKSVSGVQVEVVEEPLTQAKGKKIGILGGTFNPPHLAHLMIAEQVASQLGLDKIL FVPDYLPPHVDKKEAIAAEHRVEMVRLAIQGNPNFDLDLIEINRGGTSYSYDTVKALKEM HPENDYYFIIGGDMVNYLPTWHEIDKLARMVHFVGVDRPEYERDAKYPIIWVDTPHFDLS STMIREKVNKGCSIKYLVPDAVEDYIREHHLYE >gi|269838502|gb|ACXB01000009.1| GENE 22 20864 - 21175 240 103 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|170016752|ref|YP_001727671.1| RNA-binding protein [Leuconostoc citreum KM20] # 1 103 2 104 104 97 46 5e-19 MKLRGKQKRYLRAQAHHLRPVFSVGKNGLTKSWLAQLGGALDNHELLKINLQQNTDVTTA EVKEFIEQQTDIQVVQTIGHVLVLFKVSADPDKREISENVQKI >gi|269838502|gb|ACXB01000009.1| GENE 23 21224 - 22333 881 369 aa, chain - ## HITS:1 COG:SPy0306 KEGG:ns NR:ns ## COG: SPy0306 COG1161 # Protein_GI_number: 15674473 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Streptococcus pyogenes M1 GAS # 4 369 2 372 372 474 59.0 1e-134 MNEEEIRCIGCGATLQTEDAQLPGYTPASALKKGLESGQLYCQRCFRLRHYNEIAPVSIS DDDFRKLLSQISDSDSLVVYVVDMFDFNGSLIPGLHRFVGDNPVLLVGNKADVFPKSIKR HRMREWLRQQAKANGIEPVDVMITSAKQRPAVEQLFDKIEQLRGGRDVYVVGVTNVGKST LINSLIALRNGIKDVITTSRFPGTTLDRIEIPFDDHSKMIDTPGIVHNDQMAHVLTTEDL KYISPKKTIKPRVYQLGDEQTLFAGALARFDYENSTGSVTAYFDNNLMIHRTKLANADHF YEKHAGELLTPPAAENLANLPELARHHFKIEEDSDVVFEGLGWIAVPAGSVVTAWAPKGI SVVIRRALI >gi|269838502|gb|ACXB01000009.1| GENE 24 22336 - 22860 525 174 aa, chain - ## HITS:1 COG:SPy0305 KEGG:ns NR:ns ## COG: SPy0305 COG2179 # Protein_GI_number: 15674472 # Func_class: R General function prediction only # Function: Predicted hydrolase of the HAD superfamily # Organism: Streptococcus pyogenes M1 GAS # 4 171 25 192 194 191 53.0 5e-49 MNIFKPTWMIERIYNLSAKDLKAKGITTVLTDLDNTLIAWNNPDGTPELKRWISELKREG IRVIVVSNNSHSRVSKAVAGFGLEFDARALKPLTVGIKRVLRQYRLKKAETIMVGDQLLT DMVAANLSGVRGVLVKPLIETDAWNTKLNRFLELFIKRSLKKKYPELVWHKELL >gi|269838502|gb|ACXB01000009.1| GENE 25 23110 - 23463 588 117 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116492469|ref|YP_804204.1| 50S ribosomal protein L20 [Pediococcus pentosaceus ATCC 25745] # 1 117 1 117 117 231 100 2e-59 MPRVKGGTVTRRRRKRVLKLAKGYRGAKHIQFKVAKDQVMKSGLYAFRDRRNRKGEFRRL WIARINAAARMNGLSYSKLMHGLKEAGIDMNRKMLADLAVNDADAFKALAEEAKKAL >gi|269838502|gb|ACXB01000009.1| GENE 26 23517 - 23717 330 66 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116492468|ref|YP_804203.1| 50S ribosomal protein L35P [Pediococcus pentosaceus ATCC 25745] # 1 65 1 65 65 131 98 2e-29 MPKMKTNRAAAKRFKKTANGGLKSANAFTSHRFHGKTKKQRRQLRGTDMMDSTNVKRYKK LLSNIK >gi|269838502|gb|ACXB01000009.1| GENE 27 23742 - 24242 420 166 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163801060|ref|ZP_02194960.1| 50S ribosomal protein L35 [Vibrio campbellii AND4] # 1 162 1 163 166 166 50 6e-40 MVNETIRAREVRLIGVNGDQLGVKSKAEAIQIAEEANLDVVVVSPKAKPPVAKIMDYGKY RFEQQKKKREARKKQKTVSIKEIRLSPTIDTNDFNTKLKNAKKFLGKGDKVRVSIRFKGR AITHKDIGRKVLERMAEETSDIARIEARPKMDGRSMFLVLAPNADK >gi|269838502|gb|ACXB01000009.1| GENE 28 24467 - 25195 886 242 aa, chain - ## HITS:1 COG:BS_ysbB KEGG:ns NR:ns ## COG: BS_ysbB COG1346 # Protein_GI_number: 16079942 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative effector of murein hydrolase # Organism: Bacillus subtilis # 7 240 6 228 231 166 46.0 4e-41 MDAALATPFTGIFISLVVYLIGMWLFKVSKGFFLFTPLLVGMVLGIVILVLWGKGIGSTT VAVYKKYYLPGGNMIFWFLNPATVAFAIPLYRRNDIFKKYWVDVFLTLFVGGFISLFGIH MVSKLMGLSRVSIAAMLPQAATTAIAMPIAKGIGGDPAITAMVCIINAVIIYALAEFLIK IFKLKNISKVGTGLGLGVSGHTVGSAKAVQLGSIEGAMASVAVVIVSLAMDILVPIYVNL FM >gi|269838502|gb|ACXB01000009.1| GENE 29 25195 - 25605 528 136 aa, chain - ## HITS:1 COG:SA0252 KEGG:ns NR:ns ## COG: SA0252 COG1380 # Protein_GI_number: 15925965 # Func_class: R General function prediction only # Function: Putative effector of murein hydrolase LrgA # Organism: Staphylococcus aureus N315 # 15 132 16 131 145 65 35.0 2e-11 MKKDQEKKKTPILVQMAIFAAILFVSQIISQLFPANIVVPTPLIGMIILYILLATHIVKL EQVEKFGDFMIGLIAFLFVPSGIQLAGSLDLMKREGLQDIIVVVISIIILLVVIAYVGAF FIRIHQKITGKKGDDE >gi|269838502|gb|ACXB01000009.1| GENE 30 25893 - 26627 824 244 aa, chain - ## HITS:1 COG:SA0251 KEGG:ns NR:ns ## COG: SA0251 COG3279 # Protein_GI_number: 15925964 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Response regulator of the LytR/AlgR family # Organism: Staphylococcus aureus N315 # 1 243 1 245 246 171 38.0 2e-42 MKVLIVDDEPLARQELNYLLEENTIVDQVAEADGVVEADQYVANEHPDLVFLDIKLEDGN GMALAKKWKKMAVSPYVIFATAYDQYALDAFSAEAVDYVLKPFEQSRINEALDRIKKLLD RQQRDTANYQQKYLNPRLSITNEERTIVIKKNNIIYLEAQGGTVIIHVANLPLVTSKQPL RKLLAELDPQKFLQVHRSYVVNLDSVFELQPSFNHTYQLTLSNGIKIPVSRSYVNETKRH LGMK >gi|269838502|gb|ACXB01000009.1| GENE 31 26627 - 28372 1148 581 aa, chain - ## HITS:1 COG:SA0250 KEGG:ns NR:ns ## COG: SA0250 COG3275 # Protein_GI_number: 15925963 # Func_class: T Signal transduction mechanisms # Function: Putative regulator of cell autolysis # Organism: Staphylococcus aureus N315 # 1 581 1 584 584 487 45.0 1e-137 MLNLTLLMIERVGLIIILAFFLVNFPPFRKLLFRQDGAAKFQLIIIFAFFTITANLIGIE LSPDNSIHFNPLLLRIPAGYSVANIRILTVTVSGIIGGPMVGGVVGAVAGVHRVLQESLT NDALFYIPSSILIGILSGWFSNQKQHRFATMKPWHGFLIGLLMETIQMTFILIFSPTGWR LVRYIAIPMITVSALGTSVFLSIVALYFRQEVDVQATQTRSVLQLALKTLPAFRQGLNYK SAQEVANLMLKYTNFDAIGITDKQKILAFVGAGSDHHIAGQPIRTDLSLKAIQSGEVQIA NNFHEINCSEPKCPLHSAIVVPLFIKEQIIGSLKVYYKEQWRLSPVEIQLGMGLGEILAM QIMLGDMERQTELVKDAEIKSLHAQVNPHFFFNAINTIVAVMRQDSEKARELLIQLSTYF RANLMGSREVVIPLSQEFKHVRAYLSLEQARFPGRYRVLFSNAVSENALVPPFTIQILVE NAVRHAFNPKMKDQQIKVGVSQVANALKIVVADNGHGIDPHILKQLGHQVVDSQSGSGTA LQNLTARFAGLYGEAANLDIQSSSEGTTITVKIPFQEGKQK >gi|269838502|gb|ACXB01000009.1| GENE 32 28534 - 30477 1918 647 aa, chain - ## HITS:1 COG:SPy0517 KEGG:ns NR:ns ## COG: SPy0517 COG0441 # Protein_GI_number: 15674621 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Threonyl-tRNA synthetase # Organism: Streptococcus pyogenes M1 GAS # 4 647 2 644 647 788 59.0 0 MAEIKIEFPDGSVKPFGAGVTVLEIAKSIGTSLAKNAVAGKVNDELVNLDQPLDQDGKVE IITKDSEDGQLVNWNSAALVLTSAIKSIYPEIRIGEIGNIEHGFYADTDKEGQQISVDEL PAIEDKMKDMIQAKVALSHEMLSVEDALAKVDSDPYQAKLVKKNAKDGKVNVYDVDGSLI VSDCVALPDASGLKAIKLLSVAGAYWEGKSSNPMLQRIYGTSFFNQKDLDAELARQKEAR ERDHRVIGNDLDLFFVDPEVGAGLPYWMPNGATIRRTIERYIIDKEVQHGYQHVYTPVLM NLDAYKTSGHWQHYREDMFPPMDMGDGEMLELRPMNCPSHIQVYKHHIRSYRELPLRIAE LGMMHRYEKSGALSGLQRVREMTLNDGHTFVAPDQIQEEFKKVLQLMVEVYRDFDITDYT FRLSYRDPENTEKYFDDDEMWNHSQSMLKAAMDDLGLDYVEAEGEAAFYGPKLDVQTKTA LGNEETLSTIQLDFMLPKQFDLHYVGADGEEHRPVMIHRGLVSTMERFTAYLIEMYKGAF PTWLAPKQVTIIPVKDDLHGEYADKLREQMADQDIRVEVDHRNEKMGYKIREAQTQKIPY ILVVGDNEMDSNAVSVRRYGEDDSQTVSVDQFMQDIKADIDSYSRKN >gi|269838502|gb|ACXB01000009.1| GENE 33 30774 - 31703 852 309 aa, chain - ## HITS:1 COG:lin1595 KEGG:ns NR:ns ## COG: lin1595 COG1484 # Protein_GI_number: 16800663 # Func_class: L Replication, recombination and repair # Function: DNA replication protein # Organism: Listeria innocua # 1 307 1 306 307 229 39.0 7e-60 MENIREAIEGLMNKRKLDQRFQSVMKTVYQDPEVVAFCQTHQAELTTEALERGAAKLYEF VNERRKIARHEPSFLPGYEPQLVLSNHLIDIEYVPTKEMTMRRQAAQRQALVKSISMPKM IRRADFSDYYHEPDRNIALSKTMDFVAAYDQAPDQFHRGLYLTGSFGVGKTYLMGAMANE LAKHNYSTTIVHFPSLAVELKNTIGDSKEIQSKLDAVKQAPILVIDDIGADSISAWVRDD ILGVILEYRMQEELPTFFTSNFSMEQLEKEHLTVNQRGEAEPLKAKRLMERIKFLSEEVT LIGKNHRQG >gi|269838502|gb|ACXB01000009.1| GENE 34 31707 - 33095 1225 462 aa, chain - ## HITS:1 COG:BH3145 KEGG:ns NR:ns ## COG: BH3145 COG3611 # Protein_GI_number: 15615707 # Func_class: L Replication, recombination and repair # Function: Replication initiation/membrane attachment protein # Organism: Bacillus halodurans # 1 430 1 441 485 153 27.0 5e-37 MTEPMGNLAPNDSFIVNTDRQMTDYESRALTALYRPLLSSDAYSLAMTLWELSEEATVLN EQFTHTILLNWLGIDLPAIMEARGRLEALGLLKTFRKQVDNRALFLYVLQAPADPITFFK DDTLSALLLGAVGENEFERLSRRLIKRQVEHADFYDVSKNLGDYFQIGSSVVDKPRPISA VQKQIQPDEPQTDSETLNNNFDFNLLTQMLSTSFVDRQSLEENRHLIMVEQTIYGITESE MAELIKSATNFQDNRIDSRTLKTRIAQKYANANQQGAKKTASSAAMPTSPTKLNLEGLTA EEQTVIKSTYALAPVDFIDQIKQETGGFTTTAERRVITGIVETGQLPVSVVNFLIFYVLV DQGRATLNKNLVEAIANEWIKNGVKTPQKALEFVRERQAKKQKQATKSYGRRKPVVQRET LPDWAKKDAKTTTNNANDSQAVPTTAEINAKLKKLRERRKEE >gi|269838502|gb|ACXB01000009.1| GENE 35 33095 - 33571 545 158 aa, chain - ## HITS:1 COG:lin1597 KEGG:ns NR:ns ## COG: lin1597 COG1327 # Protein_GI_number: 16800665 # Func_class: K Transcription # Function: Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains # Organism: Listeria innocua # 1 153 1 153 154 183 61.0 1e-46 MKCPHCGNNGSRVVDSRPTDEGRVIRRRRECEDCGFRFTTFERVEATPLLVIKKNGSREE FDRDKILKGIVRAAEKRPVKMEQMTDIVDKVENKIRSLGESEVSSQVIGEYVMNILVDLD EIAYIRFASVYRQFKDMNVFLNELQDMVKKDEEEKDHK >gi|269838502|gb|ACXB01000009.1| GENE 36 33573 - 34157 568 194 aa, chain - ## HITS:1 COG:lin1598 KEGG:ns NR:ns ## COG: lin1598 COG0237 # Protein_GI_number: 16800666 # Func_class: H Coenzyme transport and metabolism # Function: Dephospho-CoA kinase # Organism: Listeria innocua # 2 178 14 193 200 133 44.0 3e-31 MGKSTISNFLRDKGIPIVDADEIAHAVLEFKAVKVQLVKAFGTPILNEQKQVDRKQLGKI VFGESKKLGELNQIVQPVIRQEIIRQLKSFTTEPVVVLDAPVLFEQGYETLVDCIMVVST TPAEQLRRLMERDHLTREDAQKRIDAQMPIEIKQKKADVTIDSSGSIEATQKQVIEWLVK QNLLQTSGKTGEVK >gi|269838502|gb|ACXB01000009.1| GENE 37 34186 - 35025 613 279 aa, chain - ## HITS:1 COG:lin1599 KEGG:ns NR:ns ## COG: lin1599 COG0266 # Protein_GI_number: 16800667 # Func_class: L Replication, recombination and repair # Function: Formamidopyrimidine-DNA glycosylase # Organism: Listeria innocua # 1 272 1 272 273 258 46.0 7e-69 MPELPEVETVRRGLVGLVEGRTIQRVVVRYPKMVTPEADQFAAELKNKTIETIRRRGKYL IFDFSNQLSMVSHLRMEGKYAVVDRDQPYNKHDHVIFELDDGQDLRYNDTRKFGRMVLTP TGQEMQVGGLKTIGPEPTPETLTLDYLTKALRSRKRVMKSFLLDQSLIAGLGNIYADEVL WLSKIHPQRRSNSLTDAEIKLLRESIFAELNEAIAAKGTTVFSYLDATGHAGSFQNQLHV YHRQGLPCPRCQTPIEQIKVAQRSTHFCPHCQVLTPEND >gi|269838502|gb|ACXB01000009.1| GENE 38 35041 - 37698 2275 885 aa, chain - ## HITS:1 COG:lin1600_2 KEGG:ns NR:ns ## COG: lin1600_2 COG0749 # Protein_GI_number: 16800668 # Func_class: L Replication, recombination and repair # Function: DNA polymerase I - 3'-5' exonuclease and polymerase domains # Organism: Listeria innocua # 326 885 2 559 559 596 55.0 1e-170 MAKDKLLLIDGNSIAFRSFFALHNSLEKFKNPDGLHTNAIFGFNKMLDSILKQYQPTAAL VAFDAGKTTFRTEMYDDYKGGRSKTPPELSEQMPYIKQLLTGYGIKTYELPNYEADDIIG TLSLAAERDNYEVVVVTGDRDLTQLSSAETTVAVTKKGVSEVEEYTPRHVKEKLGITPEQ IIDLKGLAGDTSDNYPGVTKVGEKTALKLLKQFGTIENLYDNLDDLKPSKMKEHLIEDRD AAFTSKTLATIKRDAPVEIGLADLKYDGKNITFLQEFYQKMKFRTFLAALQQNKPTGEKV SEKLAYHVLTKDTLPDFTKWGKEINFYLEMPEKNYHLSEFCGFAIGTDKELWVSDDVELL REPALSEILANQKVVVNVFDGKRTYVGLHRLGVTLNSINYDILLQSYLLDTNDNSNDLGQ LAHEHDIEDIKTDAEVYGTGAKRAVPAKDVLLEHLAHKIDVIGELGRRLQEELINNQQAD LYWKIELPLSIVLAKMEISGIKVDRERLGAMQSELTERLSELESQIHQEAGEEFNINSPK QLGHILFEKLEFPVIKKTKTGYSTAVNVLEKLRGYSPIIDHILDYRTIAKIKSTYVDGLL KVIHSTDQKVHTTYQQTLTQTGRLSSTDPNLQNIPIRIEEGKKIRQAFVPSHEGWHILSS DYSQIELRVLAHITGDHHLQEAFKKDEDIHSSTAVRIFGLKDASEVTPNIRRQAKAVNFG IVYGISDYGLSQNIGISRKDAKRFIDTYFKEYPGVKKYVDGSVETAREKGYVETIAHRRR YLPDIHASNFSVRSFAERTAMNTPIQGSAADIIKIAMINMQNELEKRQLKTRMLLQVHDE LIFEVPDEEMSVIKELVPKVMDSAIKLDVPLKVETSWGNNWYDAK >gi|269838502|gb|ACXB01000009.1| GENE 39 37797 - 38561 617 254 aa, chain - ## HITS:1 COG:RC0189 KEGG:ns NR:ns ## COG: RC0189 COG0670 # Protein_GI_number: 15892112 # Func_class: R General function prediction only # Function: Integral membrane protein, interacts with FtsH # Organism: Rickettsia conorii # 35 254 20 236 236 110 36.0 3e-24 MIDSLLIAFLLQYGKDLNGGINLDQQPRVINNTIGLNRFLTKMYGWMAAAVAFSGIIAYL GATVWRPAVMTFLSQGRMGIWLIFIALFLFMIFGQKTALQNPTVSFLMLFAFSGFFGITL SSVFMLFSIGTIAGAFFSAAAVFVVMSVIGLTTKRDLSRLGTHLLAALIAMVVVSVINLF FLHSSAVTFFFSLIGIVIFAGLSMFDTASMKNLYLSYGDRVSETGLAIQGAFSLYLDFIN LFQYFLTIFGWSRD >gi|269838502|gb|ACXB01000009.1| GENE 40 38582 - 39913 1511 443 aa, chain - ## HITS:1 COG:BS_murC KEGG:ns NR:ns ## COG: BS_murC COG0773 # Protein_GI_number: 16080031 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate-alanine ligase # Organism: Bacillus subtilis # 10 437 2 428 432 502 57.0 1e-142 MGVVKVDKDTIYYFIGIKGSGMSSLALILHDEGYQVEGSDVDGYVFTQDGLAAAGIKVLP FNPDNLREGLTVIAGNAFTDDHPEIKRAREMGLKVVRYHEFLGQLLAAYTSIGVAGTHGK TSTTGLLAHVLGGVDKTSYLIGDGTGKGVPDARFFVFEADEYRRHFIAYHPDYMIMTNVD FDHPDYYKDLADVESAFQQAASQVKKGLFAWGEDTSLRKLHADVPVYYYGTADNDDFQAK NIVRTTTGSEFDVEHRGEPIGHFKINLFGEHNVLNTLAVIAVAYFEKIDLALVQKELLSY QGVKRRFSKSTVGDNILIDDYAHHPSEIKATLDAARQEFPDKKIVAVFQPHTYTRTAALL DGFAKSLSLADQVVLTEIFGSVREANGKVSSQDLANLIGHDTKIIHEDDLSALADQHNAV LVFMGAGDILKYEDAYKALVKEK >gi|269838502|gb|ACXB01000009.1| GENE 41 39942 - 42020 1582 692 aa, chain - ## HITS:1 COG:BS_ytpT KEGG:ns NR:ns ## COG: BS_ytpT COG1674 # Protein_GI_number: 16080032 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: DNA segregation ATPase FtsK/SpoIIIE and related proteins # Organism: Bacillus subtilis # 132 684 103 693 702 499 50.0 1e-141 MVKYDGPAFFRKKGLKMDDHSVRKPTDSAKRLKSDHPFTPAIQQKLAQTQAPDTEASDLK STVRSSARLESDSTNSVDSRPVRRFRLPISNYELTRRPLPRLNQAKRQLTSRQELNDPVL DESAASDSNTTTSREEQSHSLASAAPGAPETKSVTQSTASSAAIPPASAQQLDERAKTAS GTSKSFTQPVEVPKKVTNPKQTAWEPARSVKEPQIPVAQETTKQMLGYHFPSLDLLPDPV VQNGDEDQWVADQAQRLDDALNAFEVTAKVVNWTVGPTVTQFEIELGRGVKVNKITNLTD DLKLQLAARDIRIEAPIPGKNTVGIEIPNPHPRPVPLSEIIKSPVFQESKSPLTVALGVD LFGKPQVYDLRKMPHGLIAGATGSGKSVFINSVLVSLLYKATPQMLKLLLIDPKAVEMAP YNRLPHLLAPVVSDPQAAAAALKWVTNEMDQRYERLAAAGARNLEQFNEKARRAGDDANQ MPYIVVIIDELADLMMISAAEVQDYIVRITQKARAAGIHLLIATQRPSVDVVTGLIKNNI PTRVAFMVSSQVDSRTILDQSGAERLLGRGDMLFLGNGKSNPVRLQGAFISDAIDDIADF VREQAAPHYAFNPTELKEKSAELNSTDELMDDVLEYIAQEDTISTSKLQRVFSIGYNRAA TIIDQLEESGYISASRGSKPREVFYHPEENDD >gi|269838502|gb|ACXB01000009.1| GENE 42 42037 - 42672 650 211 aa, chain - ## HITS:1 COG:SP1910 KEGG:ns NR:ns ## COG: SP1910 COG0073 # Protein_GI_number: 15901735 # Func_class: R General function prediction only # Function: EMAP domain # Organism: Streptococcus pneumoniae TIGR4 # 2 205 1 204 208 178 47.0 8e-45 MLVASYNPKTMGDILITMVNPDAEKQAVEQKDNVVRIFDADSNVTTGYNFLEVSNVLPEL DGHGSVTLTAAQVTKLNEQLRQAGFADELVADESPKFVVGYVKTVKPHPDSDHLQITETE VDNGETLQIVSGSPNMKADIKVVVAKVGAMMPDGMIIWPGELRGVSSDGMIASGRELHLK NAPQKKGALILPDNFEVGTAFDFAKGNHIFD >gi|269838502|gb|ACXB01000009.1| GENE 43 42754 - 43080 307 108 aa, chain + ## HITS:1 COG:lin1653 KEGG:ns NR:ns ## COG: lin1653 COG5584 # Protein_GI_number: 16800721 # Func_class: S Function unknown # Function: Predicted small secreted protein # Organism: Listeria innocua # 41 106 36 101 103 72 48.0 2e-13 MSSKTSALTALTITALASFAVGTLVATQIKGHRKVRPQAALARVRRSFEEEGPVEGAWIE SKPSPLNRHGLKASVYYGGITKYENNELIQYEFIADAYTGTIIDIYRR >gi|269838502|gb|ACXB01000009.1| GENE 44 43159 - 43797 593 212 aa, chain - ## HITS:1 COG:L156302 KEGG:ns NR:ns ## COG: L156302 COG0220 # Protein_GI_number: 15672731 # Func_class: R General function prediction only # Function: Predicted S-adenosylmethionine-dependent methyltransferase # Organism: Lactococcus lactis # 1 212 1 213 217 251 58.0 9e-67 MRVRNKPWAPKLIAEHPEMVVENGQAYKGKWHERFAKQQPLWIEVGTGKGQFIINMAKKY PQYNFIGIEIQKTVVAIALKNALAEELPNLQFLHADGAELTDYFADGEVDQLFLNFSDPW PKTRHEKRRLTYKSFLKVYEQILVEHGKLEFKTDNQGLFEYSLTSLNNYGMIFEGVWLDL HNSPENEDNVETEYEHKFSEKGQPIYKLVAHF >gi|269838502|gb|ACXB01000009.1| GENE 45 43809 - 45008 799 399 aa, chain - ## HITS:1 COG:lin2317 KEGG:ns NR:ns ## COG: lin2317 COG4473 # Protein_GI_number: 16801381 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Predicted ABC-type exoprotein transport system, permease component # Organism: Listeria innocua # 4 365 10 374 407 129 27.0 8e-30 MSELWQQRAKAYQSEILKYLKYVLNDHLVLALLFFGGGLGLAYANWLKTLQPLPNYGLIL VTVVSFLLTLPGQPVLLFKNADSVFLMSQEKNISAYLRKSLRRTLISVLIPVGIGSLLLF PLLALAYHQLFLVVGVILTVILGSFTNVLIRYQGCYFAGPRWDRKITLLIDAIIISLIIR FPLIAAMLMLGWLVLEWQRLNHLMESGSFNWQAAIDAEQKRMGRLYRFFSLFTTVKNLPV KAKRRRYADGLVKFLAGKSSIFSYLYSIMIVRSGDLGSLMIRLLIVGMLIVAYSDQEWLK LMVGALTTYLIVIQLVDVYRPVQANSMVQVYPVDAEMAQKGLLSVLKRIILLSAILLTLA GCVTNWSFSFLGWAIVVQAITAWLLSRWLVPRYIKKINR >gi|269838502|gb|ACXB01000009.1| GENE 46 45001 - 45738 261 245 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 18 225 21 228 311 105 30 2e-21 MTLKIEHLTGGYTQTPVIRDINLEVHEGELVGLIGLNGAGKSTTINHVIGLLQPMQGTIS LNNIQLRQQPAAYKSQLAYIPEMPVLYDELTLKEHLELTIKAYDLDEKAAWKNAMELLEK FRLANKLEWFPANFSKGMRQKVMIVCAFMTDAQLFVIDEPFLGLDPLAIDDLLGIINEKK KQGAAVLMSTHVLDTAEKYCDRFALLNEGQLKAVGTLDDFQTQFNAPTASLNDIYLSIAK GERHE >gi|269838502|gb|ACXB01000009.1| GENE 47 45881 - 46312 485 143 aa, chain + ## HITS:1 COG:lin2319 KEGG:ns NR:ns ## COG: lin2319 COG0537 # Protein_GI_number: 16801383 # Func_class: F Nucleotide transport and metabolism; G Carbohydrate transport and metabolism; R General function prediction only # Function: Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases # Organism: Listeria innocua # 3 137 2 135 140 157 52.0 7e-39 MDENCVFCKIITGDIPSYTVYEDDVVKAFLDISQGTPGHTLVIPKKHVPDIFSYDPQFAA DVFSRIPKIARAVRDSNPDIKGMNIINNNGKIAYQSVFHSHFHLVPRYTDHDDFGMRFVD NSSHYDEAQLTKIQNQIKDNLGE >gi|269838502|gb|ACXB01000009.1| GENE 48 46314 - 46676 302 120 aa, chain + ## HITS:1 COG:no KEGG:PEPE_0678 NR:ns ## KEGG: PEPE_0678 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 3 120 4 121 121 120 50.0 1e-26 MAKNKRHPWLKGIVGSWVGWQTVKYVSQHPHFLRDLKHSVKNYAQAISDFGDALQSLRLN TAQMKVEIKKSEKTFNEIQQSVDRFQYKLEPRMAKISELQNHLSNELNQVQKEVVAKKRK >gi|269838502|gb|ACXB01000009.1| GENE 49 46783 - 47676 1156 297 aa, chain + ## HITS:1 COG:lin2322 KEGG:ns NR:ns ## COG: lin2322 COG0760 # Protein_GI_number: 16801386 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Parvulin-like peptidyl-prolyl isomerase # Organism: Listeria innocua # 2 294 3 290 291 160 38.0 4e-39 MKKVLLGFASIAMAFTLAACGSKTVATTSGGKITQDEYYSSLKDTSNGKQVLQEMIVNKV LEKQYGDKVTKKVVDKQYNAYKDQYGSSFKDILASNGMTEASLRKQIRSNALLKEAVKDN DKISSSDLKKEWKSYQPKVTVAQILVSKKSTAEDVIKQLNDGKDFAKLAKKYSTDSSSKN KGGKIAPFDDTNTTLDSDFKDAAFKLDEGKYTTKPVKTQYGYQVIKMLDKPAKGKMSDHT KELKERIWNKDMSDAPTLRKVITKVLKKGNVTIKDKDLKNVLDEYLGNSSSSSTSSK >gi|269838502|gb|ACXB01000009.1| GENE 50 47906 - 48853 991 315 aa, chain - ## HITS:1 COG:SPy0267 KEGG:ns NR:ns ## COG: SPy0267 COG3481 # Protein_GI_number: 15674447 # Func_class: R General function prediction only # Function: Predicted HD-superfamily hydrolase # Organism: Streptococcus pyogenes M1 GAS # 4 312 2 310 312 340 50.0 2e-93 MTKKLIDFQNDEEMELFVLIKNAEKRVTKTGKDFISLVFQDRSGEIRGNYWDATATDFEQ FQSGRVVLLKGKRETYKGAPQVKIMAMRLATEEEPADPTAYTEKAPVSVTELREAFAQLV FEISNPDWNRVVRYLLKKYDQQFFDFPAAKSNHHAFEGGLAFHTLSIVKLAKAVAQQYEN IDQSLLIAGAILHDLGKTIELSGPVATQYTVEGNLLGHIVIIDEEVVEAAQALKIDPNGE SLVILRHLLVSHHGLREYGSPIEPHMLEAVVLHSLDDLDAQIQMVSGALKNTDEGHFSER IFGMNGRRFYKPETK >gi|269838502|gb|ACXB01000009.1| GENE 51 48869 - 51436 2386 855 aa, chain - ## HITS:1 COG:lin2324 KEGG:ns NR:ns ## COG: lin2324 COG4717 # Protein_GI_number: 16801388 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 297 1 290 908 96 28.0 2e-19 MKIKRIEIYGFGKWQNVTFDLQNDLQVFYGLNEAGKSTLRQFIYSVFFGFAQGRGSNKYL KYVPKKGRGSAGYGGAVEIDYQNHPYRIERVKGKNGGTVTIKDLLDQSTVTNDFLSEMLG PIDQHTYERLLGFNQSDLDDFNDLGNRDDLRRHILRMGAVGSEEWIQFEKDLKKDADKMH TASSRTRELDKKIKHYEKAKQHLQDDRDQLPDYQSAKALEDQNRAELQEIRQQISQLSKQ TSHQQKLLDAWSNYQKITTLRQRVQKASKADLQLDLGQISRLADQIRKVEENCQRTQQKL QNLPPLAQKADDLDQLMDLQAKLPVAKVNRDELDKAQQQQTELTNQLAELQENNSVDLGS VEPMDSATLKQVKQLLQEQAQAAAKVNQLRSVPSRQTASTNKSTNGNLIWGVGVVLAAVD FFLPVNAIIKLILLAVIILGAYAVVKQVDQPAQPADNATDDLQTAETNGRKIDEKLRQIG GQTGFDVVPATEWVFLQNEVVSYQQLGQRLAELKQRQAVLREKLADFWQTAKPILQIDEA QPQPSLNELTKWVTERIQQIQQQQSQVQTQKILTQNLAEQQAELKQLRTKFAQFAIPPLD DHFDEWLAQLTETQKQAVRLRDLEKTVDPAIQTELQKYPELTELQAQQSKLTAELQQLKA QEQALVDERTQRIGELTGLKNQIDILNEQQALAEEETELKDLIDEWLTLQLGAKWVDETL GVATKGRLPLIIQQANEYFAKITNQRYHQIEFDNDDAIHVVDQNGQAYELGELSKGTLEQ LYISIRFAFMQAFADTVDLPIIIDDAFVAFDDQRLAETFGLLKQIAQQTQIIYFSAKKEV YQLVDQRNVVDLNEK >gi|269838502|gb|ACXB01000009.1| GENE 52 51439 - 52650 917 403 aa, chain - ## HITS:1 COG:lin2325 KEGG:ns NR:ns ## COG: lin2325 COG0420 # Protein_GI_number: 16801389 # Func_class: L Replication, recombination and repair # Function: DNA repair exonuclease # Organism: Listeria innocua # 1 371 4 387 411 206 32.0 7e-53 MKFMHVADVHLGSPFRGLKNIPERLRKVVVNSTKSAFAKLVQTAIEQRVDFVCIVGDLFD NPSPDIDTLSFAVDQLDILNQAKIPVFLSYGNHDYLNAKIPTTIFPENVTIFGPEVETKK LTTTDGTIVGLTGFSYAKRAEVTSRIEEYPTNDGQFDFQIGLLHGSMDGLHASEARYAPF TLSQLLDKNYDYWALGHIHKRQILHEDPVIAYAGNTQGRHINEPGAKGASLVTLESNQKA KVEFVRSDVVEWQSLTVAVEEGADFQSVLGNILQKANTITSPSFKLMSVSLAGSNHLAPE VLEELSNGLGLSQLQKQLDSAEEWVYRILLKVDEQTPVFSELDRTYWQQAAEQVFTPKTV QKQLGRLMELDFIAEAYQADFNPEELRERVEIMLQQRNALGDD >gi|269838502|gb|ACXB01000009.1| GENE 53 52827 - 53171 480 114 aa, chain - ## HITS:1 COG:lin2326 KEGG:ns NR:ns ## COG: lin2326 COG3679 # Protein_GI_number: 16801390 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 112 1 112 117 76 38.0 1e-14 MTVNIYDTANKMEQELRLTNEYQNLKQSFEKVQQDENASALYKKFQDIQSSLQQKQMNGE ELTEDEIKKVHEVAGEIEKVDLIKDLMDKERSLNQLINDVNQIIMKPIQELYQG >gi|269838502|gb|ACXB01000009.1| GENE 54 53235 - 55382 1839 715 aa, chain - ## HITS:1 COG:lin2331 KEGG:ns NR:ns ## COG: lin2331 COG0744 # Protein_GI_number: 16801394 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase (penicillin-binding protein) # Organism: Listeria innocua # 8 704 12 701 714 586 46.0 1e-167 MENFWNTIKVFLQKIGGFFSWIWQKIHPFLHKYWHRYQLTRWIIVIVLAVIFVTSAVLTY QAKTANVKNLKAALSQPTLVYDKHNEKAGSLYSQKGTWVDLDKISPNVQNAVIATEDRNF YKEYGFSVKGIARAFVMYGMNKVLGRNYISGGGSTLTQQLVKNAFLSQQQTFTRKAKELF LSIEVENVYTKKDILAMYLNNAYFGNGVWGVQDASERYFGESAAELTVPQAAVLAGMLTN PSAYNPDDHPKNALSRRNVVLNLMAETGKISDSQAKSYAQTPIVTSNNYSNEDGYKYPYY FDAVIDEAINRYGLTESDIMNRGYKIYTYLDQGSQAGMQDTFDNANNFPSNATDGTKVQA ASVAVNADDGGVEAIVGGRGEHVFRGYNRATQIKRQPGSTLKPIAVYAPALASGYRYSSI LEDKLQSYGTNHYKPENYNNQYSGKIPMYQALEQSKNAPAVWLLNKIGVDKGYDYVKKFG LNPSEGDKNLAMALGGLTKGVSPIQLASAYTAFANDGNMSKPRFIRKIVDASGKTIVNNT PEKKRVISKKVANEMTSMMLGVYGDSAGTGYGAEPSGYTIAGKTGSTEADTSGNSEATRD KWMVGYTKDVVVATWEGFDDTNKDHHLENITGVGMNSMFKAEMSEILPNTKGTSFQVKSA SSLANNNGNSNAGNLWDNIEDGTSSIKDSISKGASGVKEKAGELFKDAKKFIMGQ >gi|269838502|gb|ACXB01000009.1| GENE 55 55595 - 56059 495 154 aa, chain - ## HITS:1 COG:TM0371 KEGG:ns NR:ns ## COG: TM0371 COG1438 # Protein_GI_number: 15643139 # Func_class: K Transcription # Function: Arginine repressor # Organism: Thermotoga maritima # 1 151 3 152 152 81 34.0 7e-16 MKKDVRREKILDLINEKPISTQLELLQALADAGIKTTQATLSRDIKEMHLVKQADITGAL TYRVMDSKEQIEPDNSPIREIFQESVTKITQVQFINIVKTEPNHGNRVAAVIDDADIEEI RGTLAGFDTLVIFSADVDEATVLNQKLNALMQTN >gi|269838502|gb|ACXB01000009.1| GENE 56 56079 - 56750 545 223 aa, chain - ## HITS:1 COG:SPy1548 KEGG:ns NR:ns ## COG: SPy1548 COG0664 # Protein_GI_number: 15675445 # Func_class: T Signal transduction mechanisms # Function: cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases # Organism: Streptococcus pyogenes M1 GAS # 6 223 2 216 226 93 25.0 2e-19 MISPTIQTEIKKFYMAQPDFGNLPMQELDRLSEATRFKRVHRGQWIFDQGDELSNVYFLK EGHVKVTAMNAEGDLTYLSFLTPQAIFPLRGILNGEEYCYNSIAITDLEVYIVPVTEIRR VIIHNYACLVSFIQRMERLVERTTSLIEQTTSSNATQRVCQVLSGLKAEYGQKRGAVRQI PFQILLKDLAVLSGTTTETVTTVVKQLQQQNKIRYNRKLISFI >gi|269838502|gb|ACXB01000009.1| GENE 57 57008 - 58696 1643 562 aa, chain - ## HITS:1 COG:L0344 KEGG:ns NR:ns ## COG: L0344 COG0018 # Protein_GI_number: 15674020 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Arginyl-tRNA synthetase # Organism: Lactococcus lactis # 1 562 1 564 564 695 63.0 0 MDYKNQVVAALKPVLNEYLSDSEIYEKIEVPKESKLGDLAFPTFTLAKVLRKAPQMIAQD LVEKIDQSDFEKVEVAGPYINFFLDKQAFGEEVLRTVLDQKSAYGDNDDGQNGNVPIDMS SPNIAKPISMGHLRSTVIGNSLALIMEKNGYHPIKINHLGDWGTQFGKLITAYKLWGSEE DVKADPINKLLEYYVRFHKEDKEKPELDDIARDWFKKLEDGDEEATNLWKWFREVSLQSF KQIYDKLGITFDSYKGEAFYNDKMDEIVQILEDKDLLKESRGAQVVDLEKYNLNPALIKK TDGATLYITRDLAAALYRYRTYNFVQSLYVVGAEQTNHFKQLKAVLKEMGYDWSDDIHHI QFGLITLNGKKLSTRSGRVVLLDEVLNDAVTLAKKQINEKNPDLANADTVAKEVGVGAVV FHDLKNERTNSFDFNLEDVVRFEGETGPYVQYSRARAESILRKADTEVTTDQLKITDANA WDTLKALQEFPSVVQRAAAQYEPSVIAKYALSLAKSFNKYYANSRILADDAEKPARLALV KSVSLVLEEALRLLGVKAPDEM >gi|269838502|gb|ACXB01000009.1| GENE 58 58944 - 59804 786 286 aa, chain - ## HITS:1 COG:ML0458 KEGG:ns NR:ns ## COG: ML0458 COG0667 # Protein_GI_number: 15827148 # Func_class: C Energy production and conversion # Function: Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) # Organism: Mycobacterium leprae # 6 279 26 296 301 284 51.0 1e-76 MIKQTFEFDDELRVNRLGYGTMQLPGHGVWGPSADEANAVAVAKRVLDSEVNFIDTADAY GPFYANLYLKEALRDYQGPHKMIASKVGFTRQGPDVWTVVGDPNYLRQQVELNLWSLGLD SIDLMQLHRVDPRFSIEEQVGVLADMQKEGKIKHIGLSQVSVEEIKRAQAIAKIASVQNR YNLIDRRDEAVLDYAESQHMAFIPWFPLATGKLASDQNSILNQIAQNHLATPSQIALAWL LQRSEVILPIPGTSNIKHFESNIQAAYITLAPNEFEALNQLAGKVN >gi|269838502|gb|ACXB01000009.1| GENE 59 60387 - 61040 400 217 aa, chain - ## HITS:1 COG:no KEGG:FMG_1604 NR:ns ## KEGG: FMG_1604 # Name: not_defined # Def: Crp/FNR family transcriptional regulator # Organism: F.magna # Pathway: not_defined # 38 195 43 193 216 79 29.0 9e-14 MEQRDFVKSILQHPLIRNHCRIEEYKRNIIVKTPGTLITEIGIVLKGYLKAIIYSRCGKE MCETIFGPNSIVLEYLHFSGDKRSTYNLGSINQCQICWIPIENFSKVVLEDPEFSKMYIR QLAKRGLENQRLITCLGYKTVRERIAYWIISGGNSAMESTEATELEFPVSQEVFSEILHV TRSSLNQELQKMSADGLFAVKRNVLKNIDYAKLVNEI >gi|269838502|gb|ACXB01000009.1| GENE 60 61064 - 62875 1573 603 aa, chain - ## HITS:1 COG:Cgl3031 KEGG:ns NR:ns ## COG: Cgl3031 COG0526 # Protein_GI_number: 19554281 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Corynebacterium glutamicum # 500 602 7 107 107 70 38.0 1e-11 MGQPSVFPHGTTIYKPEKCFNGYTIVPLINDGVLLFDMNGNEIRRWNVHAMPPKLFKGGY VMGSSGNRHPDYGMQDGVNLIEIDYDGNIVWEFDKLEKIDDPGRDHRWMARSHHDFQREG NPVGYYVPGQEAKPLSGNTLILGHQTIHNPKISDKRLLDEIMYEVDWQGNIVWQWSINEH FDELGFDEAAKNVLFRDPNMRSSDGGVGDYLHVNCMSYLGPNKWYDAGDERFKPTNIIFD SREANILAILDKDTGKIVWRIGPDFNASPELKKLGWIIGQHHLHMIPRGLPGEGNLLVFD NGGWAGYGLPNPASPIGTKNATRDYSRIIEFDPTTLKVVWEVTPKDFGHAIPVDASKFYS PYVSSAQRLPNGNTLIDEGSDGRLIEITNEKEIVWEWISPYYSHTEPGQPKNNMIYRAYR YPYDYVPQEPVPEEVAIEPIDNPTYRVPGAGKLGAKKVIDVEGTLPYYADVALCVATDDE DDTINKEKVFDVDKDFFAPLTAANFDEAVLGNQEKPVLVLFGAERCVHCKALHPVLEEAL KEDFADDFIIHYVDVDAETKLAEQHKIAGIPVVAIFKDGKELQRFNGERDYDDVCDFLED ALK >gi|269838502|gb|ACXB01000009.1| GENE 61 62887 - 64074 1077 395 aa, chain - ## HITS:1 COG:TM0869 KEGG:ns NR:ns ## COG: TM0869 COG0492 # Protein_GI_number: 15643632 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Thioredoxin reductase # Organism: Thermotoga maritima # 1 305 14 315 317 242 43.0 1e-63 MRKEYDVLIVGGGPGGLTAAIYAGRAELKTLLIEKSGYGGRITETAEVKNYPGVELDSGN HLMETFKKHAEDAESVELKRTTVTKVQPVEDGFIVSTKRRGDFTAKTVILDLGTVPRELN ISGEKEFVGQGVSYCATCDAEFFKDQEIFVVGAGDQAIEESEYLAKFAKKINIVVLHDGG ILDCNEVAAKNIKNNPKVSFIWNSTLAEIKGGEKVEEVVVKNVKTGALTTHTTKGVFFFI GMTPQTSLVKGLVEMNGHGYIHVNEKQETNLPGLYAIGDCTDNYLKQVITACGDGACAVV AAERYLTEEKQLAQILNDFDAKVAFIFFNPYESQDIDQATKFENALVEKYKVYRQDVSHQ TVLFNQLKLNHTVVAALYEHGQLTKIINSIEELEK >gi|269838502|gb|ACXB01000009.1| GENE 62 64067 - 65539 1366 490 aa, chain - ## HITS:1 COG:YPO0624 KEGG:ns NR:ns ## COG: YPO0624 COG1757 # Protein_GI_number: 16120950 # Func_class: C Energy production and conversion # Function: Na+/H+ antiporter # Organism: Yersinia pestis # 15 464 8 456 483 198 28.0 2e-50 MDSLKGGEQGYAIEFYGGKKMGMVPIVVYIIISAGLAIFFQVYSMKGLAVASVIGLFADF FFVKEKAKYWKVIIKGLTQFGNSKLIFTFILIGLFTKLLTVGNIGSGFVWLSTQLGITGS GFVVFTFIASTIISMGTGAPIAAVFAVVPIFYPPGIMLGAKAAVLVGAILSGVFFGDAMS PSSQVINTTIDTQHDKQTHKPADLQAVMKARSPYLVGVALLSAILFYMSGATGAVINPAK LAIINQNADGKGLFMLIPIVILLVISFIKKDLFLGLSYATVIGLILGVVLGNFQMRDILM TNRQHELLGILTTGTFSMTDIIISSILLFGMIAVAVESGCLDMLCEWILKKKVIQSPMGA ELVLVLSIGVINILLSGCVLPAILLFSNVADQIGQSANISPNKRSYLLTGAATTVTAIIP VNSAFVMGAVTLINQINVTGYGKVAVNPFEIFASSYYCILLTLVCFLWVFKREKQNNTEK VGIKGVSRNA >gi|269838502|gb|ACXB01000009.1| GENE 63 65777 - 66073 245 98 aa, chain - ## HITS:1 COG:no KEGG:LSEI_1048 NR:ns ## KEGG: LSEI_1048 # Name: not_defined # Def: hypothetical protein # Organism: L.casei # Pathway: not_defined # 1 98 1 96 106 63 36.0 2e-09 MNADARVILQRIQRYFKKIPNTYYAINIVDDRFDDCYNFFFIVHKKNSRPHSIPLRRVTP YDLESLKEVVREVRKVYQLTIKYTGFTTEQIRWLQSPK >gi|269838502|gb|ACXB01000009.1| GENE 64 66075 - 66320 205 81 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0120 NR:ns ## KEGG: PEPE_0120 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 81 1 81 81 95 61.0 7e-19 MQKLSGIITSSIKIISYSPLLMRFQLTDRRQQKYNMLIHTHALRFFQEARPGSALTALVR PNQRGQMVVRQFTVFNAEVLV >gi|269838502|gb|ACXB01000009.1| GENE 65 66541 - 67986 1432 481 aa, chain - ## HITS:1 COG:L119780 KEGG:ns NR:ns ## COG: L119780 COG0531 # Protein_GI_number: 15673092 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Lactococcus lactis # 6 479 2 476 488 543 61.0 1e-154 METMGNNRNFRWYNIALISFTAVWGLNNVVNNFANQGLVVIVSWILIMALYFIPYTLMVG QLGATFQDAEGGVSSWMKELSTSRWAYLAAWTYWIVHVPYLAQKPQAILIGFSWLFQSNG NFVNQTPSYVVQALSLVIFLIFLWMATKGVTTLNRVGSIAGIGMFTMSILFIILGLAAPF IAHSSIATAHMDQVSTYMPKFNFNYFTTISMLVFAVGGAEKISPYVNKTRNPSKEFPLGM ILLAIMVALSAVLGSFAMGMIFDADHIPNDLMANGSYTAFQILGNYFHVGNLLTWIFAIS NILSTSAALAISVDAPLRIFLNDADKNFVPASLRRKNKNGIAINGYKLTGILVSIIIIVP ALGIGGMNDLYNWLMNLNSVVMPMRYLWVFVAYMLLSKQIKKFNSDYVFVKNSKIGFAFG LWCFLFTAFACILGVIPKIDYAANPTTWWFQLAMNIITPFVLIALGVIMPMIAKRQVKEE L >gi|269838502|gb|ACXB01000009.1| GENE 66 68285 - 68623 456 112 aa, chain + ## HITS:1 COG:lin2607 KEGG:ns NR:ns ## COG: lin2607 COG1396 # Protein_GI_number: 16801669 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 1 83 1 84 107 57 40.0 6e-09 MDLVDRIKLTAKLKKNWNLKTTAQHAGIGVNSIYRWKTQAPRADKLLQVAEALDVSLDYL MGRSEDSQIQNHPVSMTIEEAVDGIRYFTGEPVTDFKRRGLKAIAKAYLRKD >gi|269838502|gb|ACXB01000009.1| GENE 67 68921 - 70384 1263 487 aa, chain - ## HITS:1 COG:SP1829 KEGG:ns NR:ns ## COG: SP1829 COG4468 # Protein_GI_number: 15901658 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose-1-phosphate uridyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 4 485 5 488 491 548 56.0 1e-156 MNSLEQFVQAVIDSPSQYTNLDHIYVYNRVLGLVGEGESAEAVDGQLTSLVDALVKTAIQ NGKIEDTQSDKSILADQLMDLVTPLPSVLNQLFWDKYQVSPKAATDYFFKLSKDNDYIKT RAIAKNVSFPAKTDFGQLEITINLSKPEKDPKAIAAARNQPQNGYPLCQLCMQNEGYLGR LGYPSRSNHRIIRMTVGGETWGFQYSPYAYFNEHSIFLDQVHRPMVINRQTFANLLEIVK QLPHYFVGSNADLPIVGGSMLSHEHYQGGRHVFPMMKAPVARTIELGVNGVEAGIVKWPM STIRLTSKDPVALTDAAVKIHNTWMNYSDESVDVRAYTDGTRHHTTTPITYKDGENYVMD VVLRDNQTSAAFPDGIFHPHQDVQHIKKENIGLIEVMGRAILPARLKTELVEVEKYLLNQ DNQMAEMHKTWADQLKETKSITPANVTEVVNTAVGNVFARVLADAGVFKWDEAGKAAFAR FISAVKQ >gi|269838502|gb|ACXB01000009.1| GENE 68 70399 - 71388 1073 329 aa, chain - ## HITS:1 COG:lin2620 KEGG:ns NR:ns ## COG: lin2620 COG1087 # Protein_GI_number: 16801682 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose 4-epimerase # Organism: Listeria innocua # 1 327 2 328 328 460 67.0 1e-129 MAVLVLGGAGYIGSHAVDQLITKGYDVAVVDNLVTGHRAAVNDQARFYEGDIRDTEFMDS VFTKEDVEGVIHFAAFSVVPESMKNPLKYFDNNTAGMVKLLEVMAKHGVKRIVFSSTAAT YGEPKRVPIQESDPQVPTNPYGESKLAMEKIMHWSDIADGIKFVALRYFNVAGAKPDGSI GEDHHPETHIVPIILQVAAGERDQLQIFGGDYPTADGTNVRDYVHVVDLANAHILALEYL KQGHDSDVFNLGSSTGFSNKQMLDAAREVTGKEIPAVMAPRRAGDPSTLVAASEKARKVL GWQPQYDDVKEIIKTAWNWKVSHPKGYND >gi|269838502|gb|ACXB01000009.1| GENE 69 71444 - 72607 1266 387 aa, chain - ## HITS:1 COG:SP1853 KEGG:ns NR:ns ## COG: SP1853 COG0153 # Protein_GI_number: 15901681 # Func_class: G Carbohydrate transport and metabolism # Function: Galactokinase # Organism: Streptococcus pneumoniae TIGR4 # 6 387 10 391 392 460 61.0 1e-129 MNATDLKKEFSEIFDTKPERVFFSPGRINLIGEHTDYNGGHVFPCAITIGTYGVYAPRTD STVRMYSANIPDSGVVTFDVNNLEYDKAAGWTNYPKGMMNELVKTGAKFDHGFDLYVHGN MPDGAGLSSSASIELLTGAILNTAFNLGVSQLDLVKIGQKCENNYVGVNSGIMDQFAVGM GKQEQAILLDTNTLDYSYAPVKLGNHVIVIMNTNKRRELADSKYNERRSECEEALRRLQT KLDINSLGDLTNDEFDEAAYLINDETLIKRARHAVSENQRTIRAAKALADDDLKTFGDLV TASHVSLHFDYEVTGKELDTLAEAAWKQPGVLGARMTGAGFGGCGIAIVEKDQVEAFKEN VGKIYRDKIGYDADFYIAEVADGPKEL >gi|269838502|gb|ACXB01000009.1| GENE 70 72887 - 74767 1177 626 aa, chain + ## HITS:1 COG:BH2723 KEGG:ns NR:ns ## COG: BH2723 COG3250 # Protein_GI_number: 15615286 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase/beta-glucuronidase # Organism: Bacillus halodurans # 2 622 4 614 1014 627 49.0 1e-179 MQANLQWLDDPEVFRVNQLPAHSDHHYYRNLAELNRGSSFVKSLNGTWQFHFASTPSERP LQFYSPNFDDADFDTIQVPGHIELAGYSQIQYINTLYPWEGKIYRRPPYTLNQDQLEPGL FSDASDNSVGSYLKKFDLDDSFKNHRVIIQFQGVEEALYVWLNGHFIGYAEDSFTPSEFD LTPYVQDRDNLLAVRVYKRSTASFIEDQDMYRFSGIFRDVNLLALPDAHIVDLDLKPEVN ADFKSGILTVKATVSGTNATLELSVTDQDQQLLATQTQTGTGKVSFKKIAFNSLKLWSPT SPTLYQLLIKVYDDQHQLLEVVPYQFGFRKVELREDKVIYVNNHRLILNGVNRHEWNAHS GRVISLDDMRKDIQIMLDNNINAVRTCHYPDQLPWYHLCDEAGLYVMAENNLESHGSWQK MGAVEPSYNVPGDNPHWLAAVVDRARSNYEWFKNHPSIIFWSLGNESFAGEDIAAMQAFY KEHDSSRLVHYEGVVRAPEFRDRISDVESRMYETPANIARYLENNPDKPFLNCEYMHDMG NSLGGMQSYNDLIDQYPMYQGGFIWDFIDQALLVHDPVTNQEVLRYGGDFDERHSDYEFS GDGLLFADRTPKPAMQEVKYYYGLHK >gi|269838502|gb|ACXB01000009.1| GENE 71 74751 - 75710 814 319 aa, chain + ## HITS:1 COG:BH2723 KEGG:ns NR:ns ## COG: BH2723 COG3250 # Protein_GI_number: 15615286 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase/beta-glucuronidase # Organism: Bacillus halodurans # 8 318 728 1012 1014 147 33.0 2e-35 MDYTNNQLHVIYGDGSLGVAGPNFHYLFSYERGGLESLVVDNKEWLYRTPTPLFWRATTD NDRGNGFDVKAAQWYAADRFTTCQKIELAVDGQALQPLPIAPFNNRYTNREYANEVALTY HLVTPTVPSTSVTIAYTVTSDGNINVAVHFTGRADLPELPAFGLRFIMPTTATSFDYTGL SGETYPDRLAGATHGHFHVAGLPVTPYLVPQECGMHMQTSQLTVTRSATQNNVDPDSQPF SLTFSQTKKPFAFSCLPYTAAELENATHIEELPLPRRTVLSIYGAVRGVGGIDSWGADVE QNYHIPADQDIDFDFNIHF >gi|269838502|gb|ACXB01000009.1| GENE 72 75923 - 77866 1708 647 aa, chain - ## HITS:1 COG:STM4299 KEGG:ns NR:ns ## COG: STM4299 COG2211 # Protein_GI_number: 16767549 # Func_class: G Carbohydrate transport and metabolism # Function: Na+/melibiose symporter and related transporters # Organism: Salmonella typhimurium LT2 # 13 484 5 465 476 166 26.0 1e-40 MDAEVKQSKGRKITSRLAYSFGAFGHDAFYATLSTYFIMFVTSHLFDKSSGAQGTKMIAY ITMIIAVLRFVELAIDPLIGNAIDNTNSRWGHFKPWIVIGGTIGSVVLALLFTSLGGLNT SNPILYLIVFAILYITMDIFYSFKDVGFWSMIPAISFDSAEREKTATYARVGSNIGQNIV GVVVMPIVLMFSTKANSGQGDNRGWMAFGIIIAAVALISAFAVAIGTKENDSELRKNTEK TTFKEVFKVLARNDQLMWLSLTYGIYTAGMAITNSLELYYFTYILGDASKFTLLGSLNAI IGVFAVLAFPPLAKKFSRRKVFFLAISVMVIALAMFAFAGQSLPMILTAAVLFYIPQPLI FLVVLMVLSDSVEYGQLKFGHRDESLTLSVRPLLDKLGGAISNGVVGLTAVWAGMTAGAT AGDVTSHGQAIFKLMMLGVPAVMILTGAFIFFKKVKLDEKMHAQIVDELEKTWSKHLETD ETPAEIETNSEVTIYHSPVAGKLISLDEVADKTFASGNMGKGFAIQPTDGRVLAPFDGEV VATFPTRHAIGLRSDQGILTLIHIGIGTVNMRGTGFVQYVEEGDHVKQGEELIEFWQPAI KKAGLDDTVMVVITNKEMPEFEYLKDMGNLVQDNENVLKLSNTELPD >gi|269838502|gb|ACXB01000009.1| GENE 73 78288 - 79316 310 342 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15900011|ref|NP_344615.1| aldose 1-epimerase [Streptococcus pneumoniae TIGR4] # 5 337 6 341 345 124 28 4e-27 METKKEVFDQFEGQDVMRYTLINDQQTRISVLSYGGTWQEFVVNENGVERPLIWGLDSMA DYQRVGYCLCQSVGRVAGRIGGAKFKIDGQEYQVDMNEQTHSLHGGNHGFNTLNFAGKFS EDANSVSVVLSKHIKATDDNYPGNLDVEIKFTLDNQNQVTITFTGDTDAATLFNPTNHVY WNTTDDRKSLGKQWLQITSAAHLEFDQEKVPTGKKIAVKDTAYDFNQPKSVEKALQQLKN ENGGIEFDDAYEVNPSATTPIAMIGDTDGKRQIKLYSDRNGLVVYTANPFDPDKEAAHEY NALATEAQTLPDAINHSDFGDVILRPGQPITNTIRYQYERLG >gi|269838502|gb|ACXB01000009.1| GENE 74 79477 - 80472 797 331 aa, chain - ## HITS:1 COG:SP1854 KEGG:ns NR:ns ## COG: SP1854 COG1609 # Protein_GI_number: 15901682 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 3 330 2 331 335 273 44.0 3e-73 MAATLKDIADRVGVSLATVSRVLNKDTSLSVGNETRQRILDAAEALHYSKNKRHTNSTAR KRLAIVQWYSETEEQDDLYYMSIRMGIEQRGQDNQFEVTRIFQNNLQELGPDFDAVIAVG KFSEPQVKELAAVTGNLVFVDDDQFATGFDSVITDFQLATERVVDYFWQRGIKDIGIIHG AEMTTDHKLTVTDRRMLGFQAAMEKRGAFEPKFVFEGDYTSDSGFKMMQKAIDTLGDQLP TAFFVANDPMAAGALKALQANGIEVPKRVKIFSFNNTSLATYVYPELSAVNVDTELMGAT AVNLVMSRLTGRTTTQRVELDTKLVERASTK >gi|269838502|gb|ACXB01000009.1| GENE 75 80718 - 82832 1680 704 aa, chain - ## HITS:1 COG:lin2801_1 KEGG:ns NR:ns ## COG: lin2801_1 COG3711 # Protein_GI_number: 16801862 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Listeria innocua # 5 538 1 528 544 164 26.0 6e-40 MGEYMLELNNSETKVLEALLKNNVLYSIKDLATETKLSNRAIYYNVANLSKKLMVNNIEP PRNIRGRGYYLPEESKRLLKNNYYSDKLLILDAHSRRIFLIFLMLTESSFNTLAKMAEIL EVSRNTIVHDQKIITVFLKKYHLTVIGNRKGHFISGNEVDIRYFLQNNSVKIATVLAEVS KQKGDFDEIRSIMNLRSVIESWLESIEQRSFLNFTDDGKKHLENFYMLVLNRILRGHILQ SGEMFTSGMDYHHLQKQNEFMMAKELLTKLGLDLRAKYEEEIYFLESMLLGTPKNEIGFS GESDVKNTLKKVTKEIVDNFKKLSGMNSNNESQLLNDLYTHLVSTFYRVKYNHQYRDGLV TQIKGKYFNVYTYTKMSLQPFEKLNVGHLNENEISLIAIYFGSQMVRQAKQGTVLLVCSA GLGTSRLLKEEILAHFPDVNVIGPITKSEYNNIQTDDYPLIITTTPLNSQPSNKVILLSP ILTQRDLILLQKLFVERGILQTNSKFNENKFAALMDVINDTAIIRDPVKLSEGIKEILAT DTEKRQKIIKNTYPKLSELITKDTTSFVDGQELNWQAAIELAAKPLSKNNQISHTYVEAM INNVIQNGPYINIGRMVAFAHAKTEDGVNSLGMSLLHLKEPISLVDKQHPIKLVFVLAAV DQESHVNAMAELAALLRDEEKLDRLLDAKNFEEIAQIIRSVENS >gi|269838502|gb|ACXB01000009.1| GENE 76 82901 - 83617 715 238 aa, chain - ## HITS:1 COG:SA1599 KEGG:ns NR:ns ## COG: SA1599 COG0176 # Protein_GI_number: 15927355 # Func_class: G Carbohydrate transport and metabolism # Function: Transaldolase # Organism: Staphylococcus aureus N315 # 6 238 4 237 237 217 49.0 1e-56 MDVNDLTIKVYEDGAEIEKMRAASQQAFVKGFTTNPSLLKQAGVTDYLAFARQAVAEFPE QEFSFEVFSNEPQEMLREAQILHDLGPRVYVKVPIITTTGESTADVIKELSAAHINLNIT AITTVEQVEVAERNLAPGTHNLISIFVGRVADAGIDPHHLIESSVEITKSHPEASLLWAS TREVYNVFEAQQMGVDIITVPPALITKLSKTGKAALEISVDTVKGFQRDIEESGLSIL >gi|269838502|gb|ACXB01000009.1| GENE 77 83617 - 85593 1870 658 aa, chain - ## HITS:1 COG:BS_tkt KEGG:ns NR:ns ## COG: BS_tkt COG0021 # Protein_GI_number: 16078852 # Func_class: G Carbohydrate transport and metabolism # Function: Transketolase # Organism: Bacillus subtilis # 9 650 8 663 667 657 51.0 0 MFTKKDIDAVNAIRFLSADMIEKAQSGHPGLPIDAAPMAYTLWEKFLQFNPQDPKWINRD RFVLSAGHGSAMLYSLLHLNGFDLPLTELKKFRKLGSRTPGHPEYGMTAGVDATTGPLGQ GLGMAVGMAMAERHLAALVNRPGYPVFNHFTYALVGDGDLMEGVSQEAINIAGQKQLNKL IVLYDSNDVSLDGPLSLSADENVAQRFKAANWNYQKVTDGNDLAGLQQALQQAQTSDRPT LIEVKTIIGYGTPESGTNKVHGNALGKANLAAMRQFYHWQAAPFEIAPEIYQHYQEQVAK KQTAYQAWQTMFQEYQTEFPEVYRQFQDARLDTTKLNLDDPAWQEPMATRTSNSKIMQQV ADQNVQLWGGSADLYSSNNTHLDDSKAFDALHPEQRNVYFGVREFGMATAVNGINLHGNT RAFGSTFFVFSDYLKAAIRLAAIQQIPAVYIFTHDSIAVGEDGPTHEPIEQLAGLRSIPN VTVIRPADAHEVLGAWQKIGQITDQPTVLVLTRQKVPLLAQTQTDKVAFGGYTLSPAATA NPDGILVATGSEVALALQAQQKLAQEKLNVAVVSMPSVELFQAQSSDYQAQVLPPNVKVK IGLEMGSRNGLATVASAVIGIDHFGASGNGTEVVQQAGFTVDNIVEQFKAKLAEAEVK >gi|269838502|gb|ACXB01000009.1| GENE 78 85617 - 86975 1508 452 aa, chain - ## HITS:1 COG:SP2129 KEGG:ns NR:ns ## COG: SP2129 COG3037 # Protein_GI_number: 15901943 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 4 443 1 440 448 402 54.0 1e-112 MKAILNLFVAIATQPAILVALIAMTGLLLQKKKATEVVQGTIKTFAGFLVLIGGSGILSN SLAPFASMFQSALHVQGVVPSNEAVVAIALVKYGSTTALIMLVGMIINILLARFTRFKYI FLTGQAMLYVSCLTAVILISANLGNGWQTVILGGIFEGTLLTITPALCQPFMRKITGGDT VAMGHTGNIGYATAGLVGKIFGNKEKSTEDLNIPKGLSFLRDSTVSITLLMGIVYIALAI VAGPHFVETKLSGGTNYIIYALVQAGTFAAGFVVVLQGVRMILAEIVPAFQGIAKSLVPN SKPALDVPIIFPYAPNAVLIGFFVSFIVGILSMFVMIAMKTTVIIPGVVGHFFCGAAAAI YGNSEGGRRGAILGATVNGLIISWLPLLILPVLGSLKLAASTFADTDYLVPGILLGKLGS LGTMAVVTGIILFFLIVLVTSVILNQRDKTSD >gi|269838502|gb|ACXB01000009.1| GENE 79 87000 - 87296 180 98 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148984431|ref|ZP_01817719.1| PTS system, IIB component, putative [Streptococcus pneumoniae SP3-BS71] # 1 95 2 93 94 73 42 4e-12 MKILAVCQSGLGSSFMVQMNIQQILSDEKVDKEIQVDHADVGSVTADAADYFFVETTLKS ALGSLPEDKIILLNSLINQDEIREKVNEILDKNNIQHG >gi|269838502|gb|ACXB01000009.1| GENE 80 87293 - 87745 483 150 aa, chain - ## HITS:1 COG:YPO2569 KEGG:ns NR:ns ## COG: YPO2569 COG1762 # Protein_GI_number: 16122787 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Yersinia pestis # 1 144 1 144 147 101 40.0 5e-22 MLNELLTKDTIQYRDIDHLNWQEAIKVAAMPLIKNGSILPRYVESMIKISLKEGPYFNIG PEVVLAHARPTDGSNGIALALLKTKKDVCLINDQHPAKLWFVLAANDNQSHLMVIKELMQ LLTDKKRVDLLLNAENKQSIEKIIVEGVGK >gi|269838502|gb|ACXB01000009.1| GENE 81 87899 - 88750 520 283 aa, chain - ## HITS:1 COG:SMb20334 KEGG:ns NR:ns ## COG: SMb20334 COG1262 # Protein_GI_number: 16264068 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Sinorhizobium meliloti # 6 280 4 300 303 208 42.0 7e-54 MDYQKISGETFKMGTNKGGFPEDFEGPQELVTVTNFEIAKTAVTNREFGQFVKETNYKTV AETKGNSFVFQAFIPQAKQSQYLHPTGAPWWLVVPGASWRHPFGPDSDIEDILDHPVVHV GLEDAIAFCEWAGAKLPTEAQWECAARSGSTTEYPWGDELVVDKKYHANTWQGKFPWEND ALDGFVGTAPVKSFAPNANGLYQMIGNVWEWCRNPRYVPLLDFNQRVYELKSSDKLKGEF AIRGGSFLCHCSYCNRYRVAARNGADYQSTSSHLGFRCIKEDY >gi|269838502|gb|ACXB01000009.1| GENE 82 88760 - 90217 737 485 aa, chain - ## HITS:1 COG:mlr3684 KEGG:ns NR:ns ## COG: mlr3684 COG3119 # Protein_GI_number: 13473175 # Func_class: P Inorganic ion transport and metabolism # Function: Arylsulfatase A and related enzymes # Organism: Mesorhizobium loti # 7 457 7 491 522 132 26.0 1e-30 MKRSNGKPNVIMIVVDQMRADALSFNDVKHFASTPTLDMMASEGYNFENAYSPVPSCVPA RAALLTGMDQETSGRVGYEDEVPWNFTNTTPKVFKEMGYQTEAIGKMHVFPSRKRMGYEH VLLHDGYLHVDRKYTKPYGSQFEYADDYLAFLKDHLGNNADLNDDGMNCNSWEARPWMLE ESEHPTNWVVSESIKFLQRRDPTAPFLLKMSFEKPHAPLNPPKYYFDMYMERLPKHIDLH IGNWEKESNEMPNIYALKGCLKEDDQRRMVAAYLGLITHIDHQISRFLTALKEFGEDKNT IIWFVSDHGDQLGEHYLFRKGYPYQGSIRIPSFIYDPGNLIAGHKHKIKQLVKIQDIFPS IVDLALDEKVHTDGKSVKQLLFGCYEGWRTEIHGEHSLGEDSSQYLLTDKWKLIWFSVRD EYQLFNVEKDPNEKENLVNMDSYATIVAVLKQKLIGYLQDREEGFVKNGELRPISLDKVK ATLSK >gi|269838502|gb|ACXB01000009.1| GENE 83 90232 - 91050 451 272 aa, chain - ## HITS:1 COG:lin0023 KEGG:ns NR:ns ## COG: lin0023 COG3716 # Protein_GI_number: 16799102 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Listeria innocua # 7 270 14 275 275 246 47.0 2e-65 MMKSNVKELTAQDLKQVNLRYMFGGQLGWNYERMMNVAYVHAIYPALIKLYGDDPQKLKE MFQMEMQFYNTSPFLSAIITGVDLTLQNEKGSDSKEAVAAIKTGLMGPFAAVGDSLFGAV IPTIFGSLAAYMGLKGNAAGVIIWLIASIGILALRYFELPFAYKEGKKLVSGVGNFLNNL TESATLLGVLVIGGLIPTVVNVIVPFRLTIGAKSFSLQKELLDQIIPAMVPIILVGLAYW LLGRKNMNSTRVIWFFLILSIILYSLNLLAVG >gi|269838502|gb|ACXB01000009.1| GENE 84 91037 - 91858 632 273 aa, chain - ## HITS:1 COG:lin0022 KEGG:ns NR:ns ## COG: lin0022 COG3715 # Protein_GI_number: 16799101 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Listeria innocua # 4 240 2 238 267 235 55.0 7e-62 MVANLSITQISLLTIFAALCGIDPYISGLQLSKPVIAGFFAGVIMGGIKTGLIIGATLQL MVLGVGTFGGSSIPDFASGAIIGTALGVVSGKGIQFAIGISVPVGLLLVQLDILARFCNV YFAHRVDKHIENEEFQKINTEAWLSLLPIGLSRALPVGISLFFGNSVVNTVLKYAPAWLM GGLKLAGAVLPVVGIAILLHYLPVGKFFAYLMIGYLLAAYFNMPMMGIALAGTACAMLHF NNIKQQQKQDGLHQVQPKISPTEGLEEIIGDEI >gi|269838502|gb|ACXB01000009.1| GENE 85 92020 - 93006 637 328 aa, chain + ## HITS:1 COG:SP1854 KEGG:ns NR:ns ## COG: SP1854 COG1609 # Protein_GI_number: 15901682 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 1 327 1 331 335 222 36.0 7e-58 MVTMRDIAKKADVSVGTVSRVLNSDTTLQISPKTRERILTIAEKNNYTNQRDKSQAKKGK IIITGWYTKKVKISDLYFRSLRWNIEMTLKNQNYEIIRTFFNEQDLDVKGADGIIAIGHF DQKSLEQLQEAKIPLVIVNQDTLSYEISCVTADYFTPVQKIIEHFLKNKFTKIGMIEATS KTEINASPDPRAQAFRNIMIAKGLLDEEFIFSGDFSTESGYQLMKSAIRKFPSALPSAFF VCSDTMAIGAMKALQEEQIRIPDDVSIVGFGDLEVGRYLTPSLSTVQLATQQMGTSAANL LLNQINGLQTYPVNIVTATKLLFRESSK >gi|269838502|gb|ACXB01000009.1| GENE 86 93072 - 93788 477 238 aa, chain - ## HITS:1 COG:no KEGG:EF0454 NR:ns ## KEGG: EF0454 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 232 23 254 259 166 45.0 7e-40 MGGGILIKPLFDFVGHDSVAAISFYSAIAVFTMAVVSTFKQIKDGTQLNWNFANWIAGGA AVGGMFGNSLLNFLLQLFPNERHVTMIQIVLTILSIFFSLGVTTRKKANFRLAGNYWYCF SGLILGICASFLGIGGGPINVALLILLFNIPLKEATVYSICIILFSQGFKLINITMTGDF SSINFYQLIFIIPAAILGGYLGALFSKFMLTKYVAMLFQIMLLIVVIINVYNYLQLLD >gi|269838502|gb|ACXB01000009.1| GENE 87 94087 - 94689 260 200 aa, chain + ## HITS:1 COG:FN0275 KEGG:ns NR:ns ## COG: FN0275 COG3464 # Protein_GI_number: 19703620 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Fusobacterium nucleatum # 34 184 44 197 317 74 27.0 9e-14 MSYKGVIQDNLTKSDPNLEIKSVMEEKEVYRVIGKLTYQLTSCTYCHTRSIVKNEFKTVY IRDIPFNGKSVILQIDKQRFLCKACHLSIIAQTNLIKKHAQLTQRLKFSIINYLAKNLSV DNIVQKLNVSPVSVNRIDTDLHDQWAHPKATLTEHLSIDEVRTTQHQMSFLAINAESGAL VTLLIAFPKILSIILNDVTH >gi|269838502|gb|ACXB01000009.1| GENE 88 95178 - 95381 70 67 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|270290498|ref|ZP_06196723.1| ## NR: gi|270290498|ref|ZP_06196723.1| transposase [Pediococcus acidilactici 7_4] # 1 67 54 120 120 128 100.0 9e-29 MRSPLSNGRIEGVIRKIKQINRTAYGYRNWQHLRDRVFIEFSFKTKKGNQFVAKRNDFLN SFYPHLF >gi|269838502|gb|ACXB01000009.1| GENE 89 95460 - 97415 1468 651 aa, chain - ## HITS:1 COG:ECs4459 KEGG:ns NR:ns ## COG: ECs4459 COG3533 # Protein_GI_number: 15833713 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 6 650 8 649 656 536 41.0 1e-152 MSINILKRVKVTSKFWEKYRKLVVKEVLPYQWKVMNDEADISIAEDPQNNGQDKNSHAIA NLKIAAGKMTGHHYGFPFQDTDVYKWLEAAAYSFSYKNNPDLKKITDSLVDLIEEAQDED GYLSTFFQIDAPERKFKRLQQSHELYTMGHYIEAGVAYYESTGNKKALTIATKMADCINK NFGLGEGKIPGYDGHPEIELALVRLYEVTQDSKYLKLSRYFLKQRGTNPEFFDKQIESDG IERDIINNMRDFPREYYQAAEPIKDQKTADGHAVRVVYLCTGMAYVARYTGDKELLDACN RLWNDIVKRRMYITGGIGSTTTGESFTYDYDLPNDTIYGETCASVGMAFFAKQMLNIKAK GEYADILEKELFNGALSGMSLDGKHFFYVNPLEADPEASRKNPGKSHVLTHRADWFGCAC CPANLARLITSIDKYIYTLDGDTILSHQFIANRAEFENGISIVQNNNYPWDGDIHYVIKD PKNISFRLGIRIPSWSKNNINIVLNGKKVILEVEDGFVYLDIEKDTQIDVDLDMSVKFMQ SSNRVSQNINKLAVQRGPIIYAAEEVDNDGPLWNFQIETKASPVCKYEDQLLSGVETISV KAIKLKIDSVDSPLYRELDCDTKKMETLLKLVPYYSWANRAEGQMMVWINR >gi|269838502|gb|ACXB01000009.1| GENE 90 97438 - 98844 883 468 aa, chain - ## HITS:1 COG:STM0042 KEGG:ns NR:ns ## COG: STM0042 COG2211 # Protein_GI_number: 16763432 # Func_class: G Carbohydrate transport and metabolism # Function: Na+/melibiose symporter and related transporters # Organism: Salmonella typhimurium LT2 # 22 456 16 452 457 330 41.0 3e-90 MNINKVDRNVESAHQMMVNDHLPFHRKLTYGFTDMAGNLLYTLVGSYMLYFFTNVFGLDV GIAGILLLLGRFIDALGAPIMGVLVDHTHSKYGKNRPWFLWMALPFTISIWLLFTTPALN ETMKIIYAGAMYIIAELTYTALSTPITSVLPNLTSDSNERTSANSLRMVLGNVGNFFAVT FIIPLATFFGQGNDRKGWSMAVGLYAIVAFVFIMIAFLDMREKKIGEEKIVTIRESLKAT KQNWPWVLIVLANLALWTAYSARNAALPYYFQYNLGDKGLISLFNGFSIIQIIGMASVPF VVKFLNKWGTTILMLGITMIGQIWIGMAGSNVTMGLIGWCLACIGSGSAMTMFFSMVGDT VDFGEWKTGIRANGFLTAMGASFCIQMGSGIGSFIAARILAQFGFTASHAIQTSTSLTGI NLTFIWVPVVIYALSIVCMIFYRKWEKHEPIVNKDLAERHAAESAQEV >gi|269838502|gb|ACXB01000009.1| GENE 91 99121 - 100080 290 319 aa, chain + ## HITS:1 COG:ECs4457 KEGG:ns NR:ns ## COG: ECs4457 COG2207 # Protein_GI_number: 15833711 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Escherichia coli O157:H7 # 37 288 34 271 271 80 23.0 5e-15 MKFLTFTIENSVLFYKGGEFVSNVPWCHKPMYHKGDYEIIICIKGPIYIRVENDEYTLND HGVLVLPPFKKFEGYKDSPPGIDFYWIHFFSQNKEKTIDTTATKVVQIIKERVPNIRSVM LPINFKLVDERYILVLVHQILSIRDDISFIDERDYLTSSLLIYLFKNFIGHYEHNSEITK INYIKEWIRANISDNLTVAEIAESVHLNSDYLTRLFKKCTGMTTLQYLNSLKIEVASLLL VRTEMPIKQVAFESYFNNSKVFARKFKSETGLSPSEYRRSYNRIHHNNPQVDPQIPIPKR IEDSINYIPENGDLLEENQ >gi|269838502|gb|ACXB01000009.1| GENE 92 100077 - 100274 190 65 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKFFNIIFAGQSIISWILQATFILLAWKVANHEIPNNLNTIIGATLLMIIIYVSLAHDSK TRSNK >gi|269838502|gb|ACXB01000009.1| GENE 93 100534 - 101838 1160 434 aa, chain - ## HITS:1 COG:L133416 KEGG:ns NR:ns ## COG: L133416 COG3538 # Protein_GI_number: 15673481 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 34 432 31 430 431 400 47.0 1e-111 MEEHMFIDQTKLIKQVRNYAEKISLTNAKTTAMFKNAIIDTISNTVEVQDDRVFIATGDI PAMWLRDSTFQVLPYLSISEDIPDLKGLIHGVINQQLDYVNHDSYANAFNKTASGAHFNP DHSNVRISDLVWERKFEIDSLCAPLLLAVRLYEDTGYAQHFTDYFWQTVDLIVDTFIKEQ HHEHSEYFFERDVGPASDTLSNAGRGTRIGYTGMVWSGFRPSDDACKYGYFVPGNMMIVT VIEHLLKIMKEQRIDDAALSTKMNRLANEVRNGIERYGVVELPDGARIFAYEVDGLGNYN LMDDANVPSLLAIPFIGYTDERDAVYVNTRKFVLSSNNPYYYQGTILSGIGSPHTPQNYV WPIALAMEGLTTSNLNLITTKLNVISQTDANTNQCHEGIDVNNPDKYTREWFSWANMTFC QLAFHYLKLKGELV >gi|269838502|gb|ACXB01000009.1| GENE 94 101844 - 104477 1645 877 aa, chain - ## HITS:1 COG:ybgG KEGG:ns NR:ns ## COG: ybgG COG0383 # Protein_GI_number: 16128707 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-mannosidase # Organism: Escherichia coli K12 # 1 864 4 871 877 420 31.0 1e-117 MKKVYAVAHTHWDFEWYFSRQEARVQFIFHMDDVFKALAENKLEYYMLDGQMAIVDDYLK TCPEKRATLEKYVKAGRLFVGPWYTQIDEMVTSGESAVRNLRLGLKASRKLGKSTKVGYL PDSFGQSKDMPKIYNGFGIKDAVFWRGLPADQKVRYFYWTSEDGSKVLTANIKNGYYAGV DLVEKDNFKELMQNISTDTNVEDLVLPIGGDQRAVDFNLKKRLKLANRELAGEYEIIESN YPEYFKALEQNGVLPELSGEFIDPSVSKIHRGIYSSRYDLKQIYGELEQLMIYQVEPLSA ISRQQGMEVKQGLIDEIWQTIAKGQAHDSSGGSNSDKTNRDIYNRAVEAQQLARSLKDYL LRKLSVSVKNGDDLFLWNPLPMSVDEVRELEVSTTTPSFEIISQDGKIDFDLIEQKQCNA ATLRRNPAEMDNEYYYVSRIAMRVQIKATDWTSFRIKEGTTGKEILAASVTNEIQNEKYQ IEFENGQLNITDKLNHCTYTNALSFEDGGDEGDTYDYSPAYKDWIINLGFANATITTKAG KQTQIMLLEGTWHVPYDLQERAAKKSNGAITYRIKLQLDQGGDLIKFKMNVNNQVLDHRL RLVMNTGVKAQNTFADTQFGVAQRPVIDPKMDNWQAIGYREEPTALRPMLHFANVHDREK SFSFITAGMREFQAIGDQFDKLAVTLFRGVGFLGRPDLKRRPGDASGLVMKSVATPDSQL MGEQSFQGAIVITHDWDPRQLQCMHLQVSQSGLYYQRQVINRFTTPLQYFAVNELANKVK HRPIVKINNLKVTLSSFQTSVDQTGYELRLYNPTQQTVANPGNLQFTQNVNVSLMDLKGD VQQTVANAVKNYSLPKLKPGEIRTIGLFPIGEIIGGD >gi|269838502|gb|ACXB01000009.1| GENE 95 104506 - 105843 1000 445 aa, chain - ## HITS:1 COG:lin2832 KEGG:ns NR:ns ## COG: lin2832 COG1455 # Protein_GI_number: 16801892 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Listeria innocua # 25 444 25 428 435 174 31.0 4e-43 MKFKLESIQEPLLKVSSWVERNTILQAIKNAFVRTIPFTVVGSFSNLIKMQIDALIKAKH LDNVILTNISNLFGYLGTATLGIVALIVVFSSAYSYAVELKRDSRNDNLNPIIATLLALA AYFVMVPNNVNFLDTKAKVIEGFSTSFFSYEGMFTGLIVGMISVALFAKFARSKFTIKMP GNVPQNVFDSFLSLIPISEVLLVFGALRIVIQSLGYVSLVQMISEVLIKPLLTVGTGLPA IIIVILLEQILWFLGLHGFNIVWGVVSAFWLPLFLQNVAEFAKTQSFAGISIAPNTMTNV YAMIGGSGATFGLIIAMLIFTRKGEKEREVAKLALIPGCFGINEPVIFGLPIVLNPLMFI PWILVPIINAVIAYVVTAIGWVVPLVVLNSGNEPIFISTWVLGAFHFSPVVLTFVLVVLD VFLYAPFVIINQRHERAVADQELAV >gi|269838502|gb|ACXB01000009.1| GENE 96 106012 - 106725 517 237 aa, chain + ## HITS:1 COG:lin0901 KEGG:ns NR:ns ## COG: lin0901 COG2188 # Protein_GI_number: 16799974 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 1 237 1 237 237 137 36.0 1e-32 MFRYREVYSDIKRDILTNHYRAGHALPTQDELANKYDISRITLKKSIHLLEEEGLVFSKQ GSGTFVRQRMNNQSGELLPLDLPVGVTYSHRDQKITSKILYFDARLPSKEEQKNLQIKGN EPVYEIKRLRLINGEKYSFEHTLMPVSIAPLDEKIIQGSIYDYLGSKAKLQLTDAQRIVY AEAADEEAASILGVKAASPLFVIKQTAYDQRGRAFEYSISKFIGDQSQFVLDVHLNK >gi|269838502|gb|ACXB01000009.1| GENE 97 106794 - 107213 349 139 aa, chain - ## HITS:1 COG:ECs4014 KEGG:ns NR:ns ## COG: ECs4014 COG2893 # Protein_GI_number: 15833268 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Escherichia coli O157:H7 # 1 100 1 103 144 75 37.0 3e-14 MIKTIITGHGNFATGLKSALELLSGEHKEIMAIDFTETMSEKDLAVELENVSKGNVAILY FTDFAGGTPFKEAAKISVLNKKIEVVSGCNLNALLESIFKEYDSVKAYAQDLVKITKDTA KLADFSEPISTKNFAEDGI >gi|269838502|gb|ACXB01000009.1| GENE 98 107228 - 108025 431 265 aa, chain - ## HITS:1 COG:agaD KEGG:ns NR:ns ## COG: agaD COG3716 # Protein_GI_number: 16131032 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Escherichia coli K12 # 12 265 4 263 263 308 59.0 1e-83 MESRGNHGNIQKVTNKDITKLAIRSSLLQAAFSYERMQAGGWAWAQVPIWKKIFGNDKKG LADAMADNMEFINTSPPLVSILMGLLTSLEEKRVDRQTIRGLKNGLFGPMAGIGDAIYWF TLMPIVGGIAASFASKGNILGPILFFIVYLAIFLCRIPFAHLGYNLGVKAIDVIQDNSEI IARVATIMGLTVIGALISSYVSLSLSVKIGTVSLQKDFLDKIFPNILPLGFTFFLYWLLK KKVSPIVLIAVVFVLCILCSFFNIM >gi|269838502|gb|ACXB01000009.1| GENE 99 108015 - 108815 618 266 aa, chain - ## HITS:1 COG:agaC KEGG:ns NR:ns ## COG: agaC COG3715 # Protein_GI_number: 16131031 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Escherichia coli K12 # 3 266 4 267 267 246 52.0 3e-65 MSITLTQGLMLSIFAVIAGLDSWLEVLYIFRPIISCTVAGFILGVPTLGIIAGGLTELTF AGLTPAGGTQPPNPAVCGIMTVVIAYTAEVAPATAVGLSLPFAMLMQYILLMCYSLFSVF MPVMDKAAANADTKKFGSIPYLIMTIVGILFFVVIFLSAYAAQGPMQALVKAMPLWLIHG FELSGSALPAVGFAMLLKVLLRVEYLPFLLLGFVVASFINFSNVLPAAVVGVIFAMIEFF RDKKNKKLQQQIDAIKAADGGEEDGI >gi|269838502|gb|ACXB01000009.1| GENE 100 108842 - 110062 995 406 aa, chain - ## HITS:1 COG:agaB KEGG:ns NR:ns ## COG: agaB COG3444 # Protein_GI_number: 16131030 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Escherichia coli K12 # 249 404 1 156 158 187 62.0 3e-47 MRKQPFWQYKQISEELIQQIESGEFAIKSKLPSEKELCNQYDVSRITVRKALAELEEKGY ITRRQGQGSFVKKRDAYADSEVSFIDNNSEDLRRLGHSVYIELHEFSILADGEEPNIRKL MKAKNSDYLYRINQVYISDRKPIIQRETFIIFEDFPMITSAELENAEIIPLLTRKFNLNP NLLHHEIDTEVESIPPRLHGIPSAAPRESYVKAITTYENEDNRITYMSTAISPASSHVFF VRHKEEHTMTEPHILLTRIDNRLVHGQVGVTWTKTLGANLILVANDEVATDDLQQKLMKS TADSSGAQIRFFSLQKTINVIQKAADRQKIFIVVKTPEDALTLIDGGVPIKELNVGNMHF APGKEEITKKVYVDQNDKNTLTEIVQKGVNVYIQDVPGDHKTKINF >gi|269838502|gb|ACXB01000009.1| GENE 101 110527 - 111822 881 431 aa, chain - ## HITS:1 COG:dgoT KEGG:ns NR:ns ## COG: dgoT COG0477 # Protein_GI_number: 16131559 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 15 428 29 442 445 417 48.0 1e-116 MAPLEKSKRLSINMRYVILAFVFINIVINYMDRTNVSIAMPELSKEIGLSTVQQGLIFSA FGWIYAAMQIPGGILLDKFGSRIMYFISLFGWSLVTVFQAFISGFGQLMGLRLGVGFFEA PVMPANNRAISYWFPEDERGTAIGIYSSAQFLGLAFSTPILYGIHNSIGWRGLFVVTGVV GIIWSIIWYIFYSDPDKSRFVGQDELKYIKAGGAITDDDLKNVDKHKVKLNSQNIKQLFS RRLIGIYIGQFAISGTFWFFLTWFPTYLTKAKHVNFLQSGFLSSIPYLAAFCGVILAGFI SDQLIKKGRSASLARKAPVITGLLLTLLILGANFVSNPALIILFMSIAFFGNGLATITWV FVTALAPKHLIGLAGGIFNGCGALSSIVIPVVIGILVSNGDFSSALVFIAAIALLGALSY IFVVGKIELKD >gi|269838502|gb|ACXB01000009.1| GENE 102 111832 - 114066 1234 744 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0550 NR:ns ## KEGG: PEPE_0550 # Name: not_defined # Def: pyridine nucleotide-disulphide oxidoreductase # Organism: P.pentosaceus # Pathway: not_defined # 1 744 4 747 747 1112 71.0 0 MLEENVTADITVIGGGLAGVCAAIAAARLNHKVTLVQNRGVLGGNSSSEIRVWVAGTTKH GVNRYARETGIMGELFVENQYRNPEGNPYLWDALLMEKVKEESNIRLFLNTEIMTVKMQD HQKIESISGFMSGSERLITFKSSHFIDCSGDGIVAFLAGAKFRLGRESRVEFNESLAPLH EDKTTLGSTLFFYTKDLGRPVKYVKPSFARDITKTSIIKNRIIKKEDNGCAYWWIEWGGE LDVLHDNEKIRDELQAIVYGIWDYIKNSGNYDADNLTLEWIGSVPGKREYRRFEGDYTLK QTDIEEQVLFKDRIGFGGWSIDLHPASGVYNDSVGAQHSVPDGIYHIPYRILYSKNINNL FLAGRDVSTSHVAFGTVRVMATCAVMGQAAGTAAAIAVKHNANPRDVYLHYLKEYQQTLL REDGAILGIKNQDEHDLARQADITSTSTLTEINTYVANAEPYRLTKAAAFTIPVDPQVNQ LDIFLSTEKATSLIVKWYSTGNPQNYIPDTLIGKQKIKIDKGFNGWQEVKVNYKPSHAQN LFVVIEKNEDCILYLGNQEFAGVLSYVNNPIAELNQPELHDYSRKSPLLYWTNQLINRRN FVFRVKQTNAFQPTKIINGYVRPYGGPNMWVTNFNGQPEAIELSWKGLQNMKQINLTFND DVNEDIINLHHHRTYFDEVPELVKAFNLYYWKNGSWKRWWSVDQNRQRHLVKEFEQPIQT NKLKLELLQTNGSQQFSLFEVRVY >gi|269838502|gb|ACXB01000009.1| GENE 103 114176 - 114928 641 250 aa, chain + ## HITS:1 COG:BS_ybbB_1 KEGG:ns NR:ns ## COG: BS_ybbB_1 COG2207 # Protein_GI_number: 16077232 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Bacillus subtilis # 158 246 175 263 263 79 37.0 8e-15 MSVETAGYAYWQNKPRFQLSADVDSQYVMYIIEKGACWYHFNNHEGVAKANDVLVVPPYT NFQRKMLLTMTFHFVRLTSDTDIPHSMIGNHHYSTSRFTENCSMLKKTNFSFHPRAQIVR NHIVNDFMITKIMTYFQPAPKNIRHRNQTITAAINLMHQDLTLSISKIASQVGLNAAYFS KTFKKVTGESPISFYTKIKLKKVQSLLITTDLSLTEIADTTGFNDSFYLSRVFSRYLNCS PSEFRKNHII >gi|269838502|gb|ACXB01000009.1| GENE 104 115001 - 115861 325 286 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116517028|ref|YP_816079.1| glucokinase [Streptococcus pneumoniae D39] # 1 281 1 314 319 129 29 7e-29 LMKNLITIDVGGTSIKYGLWHEEDQRLSDQGQVATPAKLTDFYQVLQTISAKFTNVAGVG MSIPGAVDQNTGVIGGISALPYIHNFPIQKELEVKLGLPVAMENDANCAALAEVALGAAK DMQNVLFVVIGTGVGGAVVVDRKIVHGHQLYGGEFGMMLGLDNQQLSTVGTAVKVAERYN AQKGTQWTGQQVFELATKGDQLAITEVQKMYANLAHVIYNIQFSTDPEAIIIGGGISANR EFINGLNQTLSDLVGQLNGIPLTPQVIAAQMHNDANLVGAAYNFYH >gi|269838502|gb|ACXB01000009.1| GENE 105 115862 - 117247 1149 461 aa, chain - ## HITS:1 COG:lin0583 KEGG:ns NR:ns ## COG: lin0583 COG2723 # Protein_GI_number: 16799658 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Listeria innocua # 2 457 4 462 464 527 54.0 1e-149 MQFPENFLWGAAASAPQTEGHSLEDGKSATTWDKWFAMNPEKFNEGQGPENTSNVYEEYP NDVQIMEDLHLNSYRTSIAWARLLPDGKTLNIAAVKFYRQYFQELINHGVHPIINLFHFD MPWWLMEKGGWETREAVDAFYFYAKTAFEQFGDLITDWVTFNEPIVHIEMGYLYGFHYPA VVDFKKAIQVGYHTLMAHVMAVKAFRETNISGGKIGIILNVTPAYARSGDKADQIAKETA DLLLSRSFLDPAVLGEVPSELIDLVKKHQMLPETKESDRKLIAEYTVDFIGINYYQPLRV KAPEEPNFPAQNTDDLFTNYEWPERRINPYRGWEIYPEALYDVAMMMKERYHNIPWYVSE NGMGVADERRYADANGKIDDQYRIDFIKEHLTQLHRAITEGSNCFGYHLWTFVDCWSWLN GYRNRYGLVSVDLDNHYQRTIKKSGYWYRNLIKQNGFSVED >gi|269838502|gb|ACXB01000009.1| GENE 106 117247 - 118062 546 271 aa, chain - ## HITS:1 COG:SP1674 KEGG:ns NR:ns ## COG: SP1674 COG1737 # Protein_GI_number: 15901509 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 7 252 5 255 283 107 27.0 2e-23 MSESMSNLILMIESKREQFTDVDQIIANYFVAHQEVRDINGLAKKLAVSPSSITRFSHKI GLSNYKELVFLYKEYLGSLNRKVSRISSDVVDSYRAIAQRTSDRYDEQTVQLFCERIFKN RIIFFWGLGFNSFVGLDFEFRFARFGKIVQHFSDQQSISLNANFLKKGDTLLISSISAKD KSILKSIETAKARGAHILLITANHESAYLPYCDGVMYTASFSPEESLGNISPQVPALIDL DIIYSKYIDLHQHDLSQWAKSENILKNWRKS >gi|269838502|gb|ACXB01000009.1| GENE 107 118067 - 120682 1803 871 aa, chain - ## HITS:1 COG:ybgG KEGG:ns NR:ns ## COG: ybgG COG0383 # Protein_GI_number: 16128707 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-mannosidase # Organism: Escherichia coli K12 # 1 724 4 735 877 430 33.0 1e-120 MKKIHVIHHTHWDFEWYFTRDEALIQFVYHMDEVFAALQAQKVDYYLLDGQMSILDDYLD AYPEKSKEIKKWVNAGRLFIGPWYTQTDELIITGESIVRNLSLGMKMAQRLGGAQPIGYL PDSFGQGADMPKIYNGMNIKNAVFWRGLPKEKTANREFIWKSEDGSQVSVANIKNGYFVG VGLIEDDDAKNMMTTVVQGASVDDVPLPVGGDQRYVDFNLKERISFYNQQLDDAKLVESN YVKYFQDLKQHQNELDQVTGEFIDPSVSKIHRSIYSSRYDQKYLNDKVERRMIYQVEPLM AMAERAGIPYKKALLEKIWKLIVRNHAHDSAGGCNSDKTNRMILARLVEADQLSYSVVDY LTRKITESDVNYGENTITFFNTLPYPITKRVKFQLSLKNPAFKLMKDDQKITVDVEKVTK EYHGQIKRDTSAYRDDDFYYKIDCSARINLPALQWQSFDVVASEAVPALLENTTDKSISD NHFKIEWVDGKLNLTNLNDQTLVEDFMYIEDGGDEGDTYDYSPAYKNQVYRLDFKDAAVT TRKGRVTSQLILQGTWAVPVDLAARAENLRNQQINYQLELELDGSGRINHELQIHNEAKD HRMRVINRTNIYAKASYADTGFGYIERPVVDPHLKDWQAIGYHEEPTAIFPMIHYVNVHD DERSVSFLTKGIKEYQITGAQNDRVALTLFRSVGYLGRPDLLRRPGVASGNQFTYIPTPD SQLQKEMHFKWATYISKQFDPAEISKEFMEYAVTNPNYQAQDLNQFTNTLKYFVMHPLKN TIKAQPFFELVDRRITFSSLTKSIDGTADLIRVVNLNKQKVQIDQLINLDKQYYINETDF SGRIRKDLGYAASIEKISFQPGEVKTFKIAR >gi|269838502|gb|ACXB01000009.1| GENE 108 120767 - 121213 404 148 aa, chain - ## HITS:1 COG:SP1619 KEGG:ns NR:ns ## COG: SP1619 COG1762 # Protein_GI_number: 15901456 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Streptococcus pneumoniae TIGR4 # 4 142 5 146 149 83 34.0 2e-16 MDANVFSKANILFDHDSQTQEEAFHAIAEHVNKLGYADSVDSFFTGLMNREKETTTGFKN GIAIPHSNDASVKRPGLFVIKFDHQIEWNALDKKPVQVAIALSIPQEGSKEHLRLLSKIA RKLMDEDFTKIILENDDPDILAQAINEI >gi|269838502|gb|ACXB01000009.1| GENE 109 121238 - 122749 1804 503 aa, chain - ## HITS:1 COG:VC1826_3 KEGG:ns NR:ns ## COG: VC1826_3 COG1299 # Protein_GI_number: 15641828 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, fructose-specific IIC component # Organism: Vibrio cholerae # 129 484 7 341 359 210 38.0 7e-54 MQKSNKGPMKIVAVTACAAGIAHTYMAAESIEKAAKARGDQVKVETDGAMGAENVLTEAD IQAADLVIVAADIKIDPIRFTGKRLYVTDSNEAIDDGAALIENAIAKAEVFGKKGTKVGK IKIGNDHKKNGFFTHVMTGISYMIPMVISAGLILTIANLYAFQRDSAGRIVKWGFDNHTQ MGLLMSNLFQVGQVGFKLMIPLFAGFVAMSIADKPAMAPAMIGAYIANDAELLHAKAGGG FIAALLVAFIVGYFVKALKKIKWPKIIQPIVPIMIIPVIATLFISLVVFYLIGSPIAAGM DGLYSWLNWINAHSTSAPIILGAIIGAMMGFDLGGPVNKTALIFGTAVFTDTMAKYGPTH ANFVPQTAAQAAISVAPLGVWLASVIWKKKFSKDEKAAAGAALGMGLVGVTEGAIPFVAA DPIRMIIANVCGSAVAGGLVSLTGCKFYGGIGSPLGTFIGYIEQPVPFITWILCVCVGIA VTAVIIGFTRSDAVIEAAKAVED >gi|269838502|gb|ACXB01000009.1| GENE 110 122960 - 123778 907 272 aa, chain - ## HITS:1 COG:lin2979 KEGG:ns NR:ns ## COG: lin2979 COG0235 # Protein_GI_number: 16802037 # Func_class: G Carbohydrate transport and metabolism # Function: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases # Organism: Listeria innocua # 4 272 6 273 273 337 54.0 2e-92 MKFIDSQYVKEMKQTTMNLYQHGWDERNGGNVSLRLTTEEVRAFSDVTETLRTVAIDFDA SELAGKYYLVTGTGRYFKNITEYPERDMGLIQINPDGQSVAIKWGFNDGGQPTSEFPAHL MSHLARLKQDPEQRVIMHCHPTNLIAMTFTLPLSEKLLSRTLWQMHPESIVVFPEGVGVI PYMCPGTTAIGEATATKMADHHVVVWPHHGVFAAGDSLDETYGLVETVEKSALVYTAIQA QGGQMFQKITDQDFRDLAQRFGLSLREEYLED >gi|269838502|gb|ACXB01000009.1| GENE 111 123803 - 125074 1152 423 aa, chain - ## HITS:1 COG:lin2980 KEGG:ns NR:ns ## COG: lin2980 COG4806 # Protein_GI_number: 16802038 # Func_class: G Carbohydrate transport and metabolism # Function: L-rhamnose isomerase # Organism: Listeria innocua # 1 420 1 420 420 554 62.0 1e-157 MTKASEVENAYKVAQARYAEIGVDTEAMLAKLAKIKLSVHCWQGDDIHGFVNPEQELTGG IGVSGDYPGMARTPDQLTGDLSEALSLIPGSHKVALHTLYAVTNQKKDFDEIGPEDFKYW VDWAKEAGVGLDMNPTFFSHPMVKHNFTLASPEKDVRDFWIKVGQQSRAIANYFGEELGQ QSVNNFWIPDGFKDNPIDKLNPRLRLVESLDKIFAKSYDEKNTIEAVEGKLFGTGIESYT VGSHLFYNNYAISRGKLWTIDAGHWHPTEDVSDKFSAFLPFGKGLMLHVSRPVRWDSDHV VIFDDALIRIMRSLVRDQELDRTNIGLDFFDATINRVAAWVIGARATQKALLQALLTPID DLKEAELNYDFTKRLAVTEELKSYPFGAVWDEFCLRNDVPVGTDWLANIREYEQKVQFPR DQK >gi|269838502|gb|ACXB01000009.1| GENE 112 125098 - 125412 440 104 aa, chain - ## HITS:1 COG:lin2978 KEGG:ns NR:ns ## COG: lin2978 COG3254 # Protein_GI_number: 16802036 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 103 1 103 104 126 62.0 8e-30 MIRIGQVMYLHKDAYAEYEKRHAELWPEMKAALKEHGAHNYSIYLNEKTGQTFAYLEVPD VAKYNEIAQTAICKKWWAYMKPLMETNPDNSPVTTDLKEVFHLD >gi|269838502|gb|ACXB01000009.1| GENE 113 125428 - 126885 1413 485 aa, chain - ## HITS:1 COG:lin2981 KEGG:ns NR:ns ## COG: lin2981 COG1070 # Protein_GI_number: 16802039 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar (pentulose and hexulose) kinases # Organism: Listeria innocua # 1 481 1 480 483 571 58.0 1e-162 MKTYVAVDIGASSGRLMLAQPTADGRLTLEEVHRFTNGFKLKDGHDRWDIDHLIHEILVG LTKVKARGINAIELGIDTWAVDYVLVGFDGQKLEDPISYRDRRTSQAITELTSELPKEYI YEKTGIQFQDFNTLYQLYKTDRALLAKTDKIMMIPDYIGYVLTGNAVTEITNASTTQMLN LRVGLFDKDLLAKVNVSPDQFPRLVESGTVLGNLGHKWHRQFDLPETEVITVATHDTASA VVGTPGQGDRWAFLSSGTWSLLGTELNVPENGLAAFHENYTNEWGAYGTYRFLKNIMGLW IAQCVRHELADEVSFGELAKQAEAVRPFQQFIDINDPRFVNPANMAAELQNYCRETQQLV PETPGELFQAIYSNLSLYYANELQKLDQILNYHIERLNIVGGGSNVALMNQLTSTLANVE VIAGPSEATAIGNVLVQMIATDAVENINAGRQLIGKSFKLKHYYPETGKYGDILQQYQQF IASQI >gi|269838502|gb|ACXB01000009.1| GENE 114 126911 - 128176 1228 421 aa, chain - ## HITS:1 COG:lin2982 KEGG:ns NR:ns ## COG: lin2982 COG0477 # Protein_GI_number: 16802040 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 1 421 1 422 422 549 71.0 1e-156 MSEEQGSVKSTIAVSITNFLDSGSIVAGASGLTFWTKELGLSSFQVGLLGALSANAFGSA IGALIGGHLSDKFGRKVIYTYDMLVYMLGTAIIAFSINFPMLLTGFLITGIAVGAGVPAS WTYISETSGSTDRAKNIGISQFAWSMGPAIIFIAGTILAPIGLLGNRLLFVFLTIVAFIA WRLQSKLEESQVFEEQKQAEKDSGITSHPYKDLFSNMVNIKSLLFLIGVYMFWNLVAGAM GFFMPYVYETVGGLTNMQANLLQAVLWILTALGTYVGFAKFGDRANHRIFYFVGAAMAAA SWIVLTYAGMNWTSLWLFVILWGVSAGIGAQAWYALWATELFPTRYRAGSQGVMFFVVRG SAGIWSIIFPTILTSMGFKAAGTFMIALLIVSLVIGTVWTPHTRGKSLEQISKERYGNDQ D >gi|269838502|gb|ACXB01000009.1| GENE 115 128295 - 129269 659 324 aa, chain + ## HITS:1 COG:lin2983 KEGG:ns NR:ns ## COG: lin2983 COG2207 # Protein_GI_number: 16802041 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Listeria innocua # 9 324 8 323 326 208 37.0 1e-53 MNPRALHMLSQTNIVEEKQKIKRSFVEDMPSYVLQTGELSDDKIQILNNNLFKNRDVYIS RHNRYAPYPAHSHTFFEMNYMLQGHATEIVNDQRIELQTGDLLLLDIGAKHQIAALGDHD ILVNILFKRQVISINLLNDIRRSNSILHDFLIDRAIDDATGTKNFLLFKHKSGHEIPNVL DKIIEEYYLKRDFSNSIIKSYLQILFVLLVRHYPLDIGQHPTKQQILVTKILKQIAENYQ TIRLDDLARKYKYSKNYLGNLFKEVTGKTFTQAVTQQRLIQARNLISSTNLPITEIMHQI GITNKTFFYKKYEEFYHGKPGDDR >gi|269838502|gb|ACXB01000009.1| GENE 116 129421 - 130542 966 373 aa, chain + ## HITS:1 COG:BH2011 KEGG:ns NR:ns ## COG: BH2011 COG1062 # Protein_GI_number: 15614574 # Func_class: C Energy production and conversion # Function: Zn-dependent alcohol dehydrogenases, class III # Organism: Bacillus halodurans # 1 363 1 360 366 322 47.0 6e-88 MKIKAAVVEKQNADFTIKDDIELAPMGADDIQVHMVASGICHSDEALRVGDAVIDYPIIL GHEGAGIVEKVGPEVTQFKPGDHVVLSFYACGNCDNCLKGIPTQCRNYAANNLSGVRPDG SDHFTENGEHVADMFDQSSFTTTTVVRERNAVKVDDELDLRKLGPLGCGYVTGSGTVLNT LKPRPGDTIAVFGTGAVGLAAMMAGKISGCTKVIGIDIVDSRLELAKELGATDVINSRNV DVVEEVKKLTNDRGVNWAVDTTGITQVMEQSIQVLTQGGTTATIAVTPNHIDLDTWNDLC VDDKKIVGVNMGDSIPQIDIPRLIEFYKAGMFDFDKTEKFFKFEDIKEANEASRSGEVIK PVLIIDPDYVPGK >gi|269838502|gb|ACXB01000009.1| GENE 117 130628 - 131266 261 212 aa, chain - ## HITS:1 COG:no KEGG:PEPE_1706 NR:ns ## KEGG: PEPE_1706 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 211 1 211 217 250 57.0 2e-65 MRIRVDITGKRFGKLVAQYPVRSPKTGKLQWHCQCDCGRVTNVDLQHLKTGNTKSCGYCT KVRYDLTGKRFGRLVVTGRTNRKSTSGNYYWACQCDCGRKVDAESYLLRHGKVRSCGCLR KEKSAERLKNNRKISAQMGAKDAFRDPNGNPIQSVVTSSRNQSGVVGVSFNSSGNKWVAR MMVNGKMVLNESYDEFNDAVAARREAELKYLK >gi|269838502|gb|ACXB01000009.1| GENE 118 131445 - 132041 573 198 aa, chain - ## HITS:1 COG:pli0059 KEGG:ns NR:ns ## COG: pli0059 COG1961 # Protein_GI_number: 18450341 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Listeria innocua # 1 195 1 197 199 126 39.0 3e-29 MKYGYARVSSKDQNLARQLARLKEVGVNRIYKEKISGAINERPELAKVLDVLKPGDELYV LEMERLGRNNKFLTHIFMEVYLREAKLIILDLPTFDDIDDENMRNFLQNIFIETKKFQAE SERQRIRIRQRQGIELAKKRGVYKGRPVLYGPDVKNPNRRKIYFDIRDDLAAGKSIMAIK RKLGVSRTLIYRIKSEMS >gi|269838502|gb|ACXB01000009.1| GENE 119 132436 - 133605 1131 389 aa, chain + ## HITS:1 COG:MA2630 KEGG:ns NR:ns ## COG: MA2630 COG1454 # Protein_GI_number: 20091453 # Func_class: C Energy production and conversion # Function: Alcohol dehydrogenase, class IV # Organism: Methanosarcina acetivorans str.C2A # 5 385 21 399 400 329 47.0 5e-90 MKENFDFLMPSVNFFGAGVINKIGERAKMVNMKKPLLVTDRFLKKMENGPVEQTISSLKE AQVDFAIYDGVEPNPKVRNIKEAKQVYLDNHCDGIITVGGGSAHDTGKGTGIILTNGDDI TKLAGIETLDNPLPPLIAVNTTAGTASELTRHCVITNEETHLKFVVVSWRNVPLVSFNDP KLMLGVPPKLTAATGMDTFVQAIEPYVSTNHNDITDGQCLQAIRLVEESLREAVANGENL EARTKMVEAEMLGGMAFNNADLGYVHAMAHQLGGQYDAPHGVCCAVLLPIVERFNIIACP ERFADLAVAMGENIDGLSVREAADKAIDAMQQLNDDVGIPRSIKDLGADPKDFELMAENA LKDGNAFSNPRKATKEQIVALFQAAYDAK >gi|269838502|gb|ACXB01000009.1| GENE 120 133684 - 133944 366 86 aa, chain - ## HITS:1 COG:SA0081 KEGG:ns NR:ns ## COG: SA0081 COG1937 # Protein_GI_number: 15925789 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 5 85 4 84 86 65 41.0 3e-11 MATCDQQILNRLKRAEGQIRGIQKMITDGKECSEIIPQLNAVKSSVDRIKGIMVAENLKD CLENPANDKETQDEKIARAIEMIVKK >gi|269838502|gb|ACXB01000009.1| GENE 121 133945 - 134238 264 97 aa, chain - ## HITS:1 COG:L193291 KEGG:ns NR:ns ## COG: L193291 COG0607 # Protein_GI_number: 15672766 # Func_class: P Inorganic ion transport and metabolism # Function: Rhodanese-related sulfurtransferase # Organism: Lactococcus lactis # 1 97 26 120 125 90 45.0 6e-19 MKSIKAKDLMKKIENKKVNVIDVRESFEFGMGHVPSAKNFPLSTLQDTAKSLDKNQTYYV ICQSGARSANACGYLDQLGFDIINVEGGMNAWQGDID >gi|269838502|gb|ACXB01000009.1| GENE 122 134225 - 135889 1216 554 aa, chain - ## HITS:1 COG:L194050_1 KEGG:ns NR:ns ## COG: L194050_1 COG0446 # Protein_GI_number: 15672768 # Func_class: R General function prediction only # Function: Uncharacterized NAD(FAD)-dependent dehydrogenases # Organism: Lactococcus lactis # 3 457 4 456 456 533 60.0 1e-151 MSKVVIVGGVAGGMSAATRLRRLAEDAEIIVFEKGPYVSFANCGLPYHLSGTIPERTSLM VQSPEALWARFRIDARPNHEVISIHPQEKIVEVQHRGKVFQESYDELILATGASAIIPQI EGLAQAKNVHTLRNIPDMDEILNQLEQGVQNATIVGAGFIGVEMVENLHKRGIHVTLVEK ATHVLPNLDAEMAAFVEEELLKNNVDLQLSKAVAEIKDNGTRLVLDDGTQINSDLTILSV GVQPNSVLAENAGLQLGLKKGIMVDENYETSVKHVYAVGDVAVTKQQITNEPALIPLASP ANRQGRQVADVLAGLRRVNRGNIGTAIVQAFNLSAASTGLNEQTARQKFANVLVAHVSGT DHATYYPNSQAMWLKLIFDGKTGQIYGAQAVGANGVDKRIDVLATAIKGNLSVFDLPELE LTYAPPFGTAKDVVNMGGYVATNLVEGLSKNIQWHELSAELAKGKQLLDLRDPKEIVRDG RIKGATNIPLNQLREHTNLLDPHQEYVLYCQSGLRSYVGERILRQKGFKVENLDGAFGLY KTIMKEEVEQVEKY >gi|269838502|gb|ACXB01000009.1| GENE 123 135891 - 136202 193 103 aa, chain - ## HITS:1 COG:L193718 KEGG:ns NR:ns ## COG: L193718 COG0607 # Protein_GI_number: 15672767 # Func_class: P Inorganic ion transport and metabolism # Function: Rhodanese-related sulfurtransferase # Organism: Lactococcus lactis # 18 101 19 102 102 74 45.0 4e-14 MKLPFWGHNTINISAIAERKEDFELIDVRTPVEFRSGHINYAKNVPLDKINRFSGRKDQP VYVICQSGMRSKRAAKFLRIQGYNAKSVRGGMNQWNGPVRKGK >gi|269838502|gb|ACXB01000009.1| GENE 124 136436 - 137020 336 194 aa, chain - ## HITS:1 COG:mll1286 KEGG:ns NR:ns ## COG: mll1286 COG2249 # Protein_GI_number: 13471345 # Func_class: R General function prediction only # Function: Putative NADPH-quinone reductase (modulator of drug activity B) # Organism: Mesorhizobium loti # 1 139 1 139 195 111 37.0 8e-25 MKTIIVYCHPYPHSFNHAILEAVCDNLKTKKVDFRIIDLYAEDFDPVYSKEELALYHEGG TVDPLVKKYLALLKGADTIIFITPIWWNSIPGMLKGFIDKVMKEGENLSHTISKRGVKGG LTNIKHCYVLTTSTSPTLYIKYLNGNAVQRIFIKQTLKQLGFRHGHWQNFGLVSNSTQTR RENYLFRVRQQNFK >gi|269838502|gb|ACXB01000009.1| GENE 125 137020 - 137559 425 179 aa, chain - ## HITS:1 COG:no KEGG:LJ0242 NR:ns ## KEGG: LJ0242 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 5 178 3 176 177 144 47.0 2e-33 MIKNTDEKIIDETIKFIRDNDYQQLSLRKISKKAGLTTGAFYKHFKNKDELFYKTSVKLS EQIFEEIDVNQEEAASEQLLQIAKKFCQLFQTKTKIMNFLFFNPSLIKIYQESSKEFPFL KISQNLAYQINTGPLDNEQFFNQIWAFIQGYALLIKNQVTTYDSQLIETTLKQFIGEKI >gi|269838502|gb|ACXB01000009.1| GENE 126 137734 - 138171 375 145 aa, chain - ## HITS:1 COG:SP2165 KEGG:ns NR:ns ## COG: SP2165 COG4154 # Protein_GI_number: 15901975 # Func_class: G Carbohydrate transport and metabolism # Function: Fucose dissimilation pathway protein FucU # Organism: Streptococcus pneumoniae TIGR4 # 1 145 1 141 147 159 57.0 2e-39 MLNRVPKNLSPELIKTLMEMGHGDEILLADANYPAVSNNKKIIRADGLMIPELLDSILKL MPLDSYSDYQAIFMQVVPGDQNVPNGAPPIWEKYRDSIGKSFKNYTVKQIERSAFYEYSH QCFAIVQTGEKALYGNLILRKGVVM >gi|269838502|gb|ACXB01000009.1| GENE 127 138174 - 138554 258 126 aa, chain - ## HITS:1 COG:BS_ywtG KEGG:ns NR:ns ## COG: BS_ywtG COG0477 # Protein_GI_number: 16080636 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus subtilis # 22 117 340 436 457 68 38.0 2e-12 MGGQVLPAIALCIWSDNVIIAVISIFLYVFMFGFGLGPVFWSYVPEILPLKARALGMGVI TFTQYLLNAIFSLIFPICLSIVGINIFYFFAFLSAFSVWYIHKYVLETKGRSLEEIEAYW EARKKE >gi|269838502|gb|ACXB01000009.1| GENE 128 138563 - 139510 760 315 aa, chain - ## HITS:1 COG:BS_ywtG KEGG:ns NR:ns ## COG: BS_ywtG COG0477 # Protein_GI_number: 16080636 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus subtilis # 15 313 9 305 457 206 42.0 6e-53 MEENLSTKPKTKGIVYLFAILGGFAGLLYGYDSGAISLALPSITTAFGLDSVQKGLVVSF LLFGALPSIVVFTALEKKIERRNVLIVAGVVFLAGSLLSAIATGTVFLMMARFVLGIAAG IANMYGLIYLSELAPAHIRGLMSSLYQLSVNVGILVAYAVGAYNLPQDDWRWTLGLGVVP ALILTIGMVMSPQSPRWLIRDGKVERARKVLTKVRFTSTEVESEIKDIQNSLKTKEAGLS ELFGTFRPALTLLIILTIFQVFTGINAAVYYAPEIFHNLGMANSSIVADFGVGIALVVST FVSLPFIDKLGRKNY >gi|269838502|gb|ACXB01000009.1| GENE 129 139513 - 141015 1253 500 aa, chain - ## HITS:1 COG:SP2167 KEGG:ns NR:ns ## COG: SP2167 COG1070 # Protein_GI_number: 15901977 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar (pentulose and hexulose) kinases # Organism: Streptococcus pneumoniae TIGR4 # 6 455 4 443 467 281 36.0 2e-75 MEKVNVIAVDLGASSGRVISGQFDGKQIKLKEQYRFSNHPVEINDRLNWDYLKIFQEVKR GLALTMRDLGHLDSLSVDTWGVDYGLLTKEGEVLFAPHCYRDSRTSPYEAEFAERLPAKQ LFRMTGNAPDRINTNLQVFADLQRAPFLKRTVDQLLMMPSLIEYFFSGIKQNEFTIASTT GLLDVRTKNWNTKVLNRLEIPAEWFADVVIGGANLGPIRQAISEEIKVSAEMRVISGVGH DTAAALMALPLNEAERKQTAFISCGTWSIVGLQNDQPIISEAAFEMGLTNEGCFDGSNRV LKNITGLWVIQELQKEWTYTGAEISFAKMQNEAAKAYSINSFIDLADVRFAEPRQMEEKI VAFLKETHQTLPKNRGQLIRAVLESLAFSYRQVIEKLEKLTGTTLQKVHMFGGGIQNQLL VQLTADFTQRKVVTGPVEASVLGNVVAQLKVLGKITDPVKLDVLANTVDVQDFNPTEIPG LEQKYAQFMRILAANNTEGK >gi|269838502|gb|ACXB01000009.1| GENE 130 141029 - 142816 1523 595 aa, chain - ## HITS:1 COG:SP2158 KEGG:ns NR:ns ## COG: SP2158 COG2407 # Protein_GI_number: 15901968 # Func_class: G Carbohydrate transport and metabolism # Function: L-fucose isomerase and related proteins # Organism: Streptococcus pneumoniae TIGR4 # 4 595 2 588 588 867 69.0 0 MLKINYPKIGIRPTIDGRRKGIRESLETQTMDMAKAVAELLESKLFYPDGTPVKTVISDS TIGGVKEAAASKEKFDKENVCGTITVTPCWCYGSETMDMTADIPHAIWGFNGTERPGAVY LAAVLAAHAQKGIPAFGIYGADVCDADDKSIPDDVAKKLIRFAKGILAVGIMRNKSYLSI GNVAMGIGGSMVNADFFQNYLGMRNEYVDMTEIVRRWDEGIYDKEEFEKAMKWAEKHTPI GPDLYNSDDPNRFTDKEKKAQLADCVKMAIIARDLMEGNPKLAEKGFVEEADGHNAIAAG FQGQRQWTDHFPNGDYMEAFLNSQFDWNGIHAPHVFATENDSLNGASMLLNYLLTNTPQI FADVRTFWSPEAIKRVTGTELTGLGKDGFLHLSNSGAQTLDATGEEKVDGNPAIKPFWQV TKDEAKRSLEKTRWIPANIGYFRGGGFSSNYLTKGGSQGMPVTMSRINLVKGVGPVLQIA EGYAIDLPEQVFNVINERTDKGWPSTFFAPILTGHGAFKSVYDVMDNWGANHGAISYGHI GADLITLASMLRIPVNMHNVSEDKIFRPRVWSLIGTENQEAADFNACQTLGPLYK >gi|269838502|gb|ACXB01000009.1| GENE 131 143033 - 143788 594 251 aa, chain - ## HITS:1 COG:mlr5371 KEGG:ns NR:ns ## COG: mlr5371 COG1349 # Protein_GI_number: 13474478 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Mesorhizobium loti # 1 238 1 238 258 122 31.0 7e-28 MFKNERFLTILDLLQKKKVMRIKDLQKELFASDSTIRRDLIALEKMGKVTRKFGRVELVK ADNIELSFLFRQQENSESKKYIAEIASTFLGDNEAIFVDSSSTTSFLASFFEGLTNLVVV TNSLKLAIKLDEIPAVKTFIAGGRLRSGTGSILGDISLDFFSDFRADLVFLSCSSINAND VYMSSEEQSGVKRRMMENAESKILLCDHSKFNVKGYYRLCDVNDFDVIIMDQQPPEEIMA VWSHKNVEVLY >gi|269838502|gb|ACXB01000009.1| GENE 132 143974 - 144549 645 191 aa, chain + ## HITS:1 COG:lin2198 KEGG:ns NR:ns ## COG: lin2198 COG0235 # Protein_GI_number: 16801263 # Func_class: G Carbohydrate transport and metabolism # Function: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases # Organism: Listeria innocua # 3 191 1 184 216 171 47.0 8e-43 MKMMFEEERIDLAHTVQKMFDRKNTNVAGGNMSIKVFDQKMHPYIIMTPTFMSETYYSEL HAAQILVIDEETGEKIDGVGDVTREINMHKEAYKAHPGIRCVYHSHAEESMFWATAGLDM PNVTEATRELGQIKVLPFAPATSQALADIVFKNLQAIGDKAMENVFLLNSHGVVITTTDL HVAARILETLE >gi|269838502|gb|ACXB01000009.1| GENE 133 144858 - 145760 478 300 aa, chain - ## HITS:1 COG:BH0916_1 KEGG:ns NR:ns ## COG: BH0916_1 COG3325 # Protein_GI_number: 15613479 # Func_class: G Carbohydrate transport and metabolism # Function: Chitinase # Organism: Bacillus halodurans # 5 298 135 445 450 152 31.0 8e-37 MDKGAHFKQIATIKQHFPNLKVNISIGGWGAEGFSDAVLNADSRNKFATNIINFIQQYGI DGVDFDWEYPGSALGGIKSRTQDAENFYAFLKVLRKKLTNCSDEYEISAAIAGDPSLLTS LINGEKLSIAEYLDYLNVMTYDLRGSWTNITGHQTNLFPYDAIEGELSIDTTVKYLIAKQ VPTDKIVIGSAAYSRDWRGVDQQAPSPVGALAKEKGTQTTPYQKISQLIAQKPQCYFWDE KAKAPYYFDEQVFRSFDDEKSMESKVKYVQQQRLGGLMLWELSLDPQNQLISAATNALDK >gi|269838502|gb|ACXB01000009.1| GENE 134 145995 - 147311 1002 438 aa, chain + ## HITS:1 COG:lin0033 KEGG:ns NR:ns ## COG: lin0033 COG1455 # Protein_GI_number: 16799112 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Listeria innocua # 14 435 19 431 452 288 37.0 1e-77 MLTKYITKWLIPVATKVSESRHLVAIRDAFIDIMPIIMVNSLFILLNSLVFTNATVVKAF PYATKLVDIGTMVNQGTMGIMTILVSFLIGYRLTNFYIANGRIDSKEVNPLHAGILSLAT TLIMFPLYNDVIPVGATKPVQVAGIYAQTLTSSGGMFVGIIAALLSTELLVWISSKKKFQ IKMPDSVPPAVAQSFNTLIPESLVIILFAILTFTYTQIAGQNVPQLITDVISLPLQVALE SPLGLFVVQILTQILWFFGLHGQNIVSSVTSPSMLVAIQQNIDAFNAGHAVPNIVTNPWI GMYTLLGGTGAILPFLIAIFWGSKRKDYRNVAKLGLLPSFFNISEPIMFGMPVVMNPFFA VPFLFVPIINLAIAYPLTALGLVAKSVVIPPWTLPPILTAWVTTAGDLPATLLSAFLFIL DIFLYLPFVIASNRSKKI >gi|269838502|gb|ACXB01000009.1| GENE 135 147327 - 148604 839 425 aa, chain + ## HITS:1 COG:TM0306 KEGG:ns NR:ns ## COG: TM0306 COG3669 # Protein_GI_number: 15643075 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-L-fucosidase # Organism: Thermotoga maritima # 31 352 22 358 449 139 31.0 1e-32 MKKIRQDIVENQKTAVEEYASLTNSQKQQLRWFQDQKIGVIFHWGLYSAAGIVESWQLSK EDTWARKKPWRNDLTTLRHDYWNLAKAFNPAKFDPEKWATEVQKAGFRYAIFTTKHHDGF NMYATQQSDFNVTHYTGKDLFHEFAKSLTAHNVAVGAYYSKADWHCPYYWTPGSDPRGRY ASYDPLSNPQLWKKFNDFVKKQLLEITRNYGKIDILWLDGGWVNSEHHEFLDMDRIVSQI KQTQPQILVVDRTIGGKHEDYVTPERKIPDVIPHKVWESNLPLAKNWGYVPNDVYKTFPE ILHYLVKIVSLGGNVILGIGPKPDGTLPTPALKLIRQLGKWLATYGGGIYGTRALPNLKQ TNWYFTAKDHFLYAFAEKKYFRPQDLQLGIFTTHVLNRQDLFTQNPDDPILGLKITMDKN VTELI >gi|269838502|gb|ACXB01000009.1| GENE 136 148723 - 150300 1200 525 aa, chain - ## HITS:1 COG:no KEGG:lp_3473 NR:ns ## KEGG: lp_3473 # Name: ram2 # Def: alpha-L-rhamnosidase (putative) (EC:3.2.1.40) # Organism: L.plantarum # Pathway: not_defined # 1 524 4 527 528 646 60.0 0 MAFTFQINDDVEFNHDKQLLKKADDNIPELAKRVVTPVQVVETMIDKNLLDNVGTKKVAD ATQLSQMKFGRDDRLILDFGNHYVGHFTIRIKSVGSPMDAPLTLKLKFAELPTELNQDSQ DYQGWLSRSWMQEETVHLDELPANLYLPRRYSFRYVEIKVVDTSPKWQVSFFEPALIAES AAQGAPTPFHTDDKLLQKIDQVGLKTLADCMQDVFEDGPKRDRRLWIGDLRLQALADYQT YDNQTLIKRCLYLFGALAAKDGRIPANVFVKPTYTPDDTFLLDYSLFFVSILDDYFQHTD DYTVLEDLYPVAKKQIDYVMKNMVQSNGKIVFDEDYPVFVDWSNEFNKDTAGVAIMIYAL KQFIHLSRLQKLDTIDYYQKELAQITNYAKQNLYNEERGLFISGPDHEINIASQVWMVLA QVMTPEENHQLMSNAVKKLFPIKGIATPYMYHHVTQALFEAGLTDAGIQLLKDYWGKMIE LGADTFWEAFDPNDPSYSPYGSAMVNSYCHAWSCTPVYLMRKYLS >gi|269838502|gb|ACXB01000009.1| GENE 137 150307 - 151572 1081 421 aa, chain - ## HITS:1 COG:SSO1305 KEGG:ns NR:ns ## COG: SSO1305 COG0477 # Protein_GI_number: 15898146 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Sulfolobus solfataricus # 17 400 25 411 463 109 26.0 1e-23 MQNQSDNLVKKYRPLAIAAGIGSILGSGIIVGLSATITVWQQGLALSNTQVGVISGALTF AIAMGSLVAGWLTKNWGLTRSFNWLNLGYAVGALICVLANSYGFLLTGVIIAGLASGADL PVSLTIISHDVPDDKATARLVSFTQVFWQIGVFFSYGCAFVVSKMTGATGARIVFTILAV CAAITFIWRTFSGRFKEFHREANQRIDQMQSPITSESGSLFKILRQNHQYGLFFIWIMIF YCCWNLLANTFGQFQTFTLVQAHASQSFATGAGLVLNVVALIASISFASVAGSRYRNKFF VVGSVIELLAMLGLALSSHALWPIVIAIGFYNLGNNIAGEAMYKVWTQESFPIDSRASVQ GFISGFSRFLCGIFAFITPTLVLPSHIRMTMFGFAGIVAVCLIAGLVMIRLQKKYQINVE E >gi|269838502|gb|ACXB01000009.1| GENE 138 151692 - 152684 666 330 aa, chain + ## HITS:1 COG:lin2983 KEGG:ns NR:ns ## COG: lin2983 COG2207 # Protein_GI_number: 16802041 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Listeria innocua # 47 321 47 325 326 123 31.0 6e-28 MDFITLDKKIRSLNYVENTQRKNHANYNYMKLNFKESPIPKMPKYNFFKHGDLTIVKGNR FSYVPAHTHDFIELNYMYSGSCIQSLNNEQFEFTEGQLLLMDKNTVQKIGYTGENDVIIN ILLKNSLTITKILDLLSGQSNAVTDFLQNCNLKTTNHNFMIFDLPAQSLSRSLIMDLLFV AFESAHKNNNQVLKLLFSTLITQLPPLVSHHHLNFAADNNAELLAILKYIEQYYSTTNLQ YTSKHFGYNMNYLSNKIKAATGQTFKELIEQRRLYAAQELLFQTNLSLDQISLRIGYKNP SSLNRLFKKYVNTTPINYKNELIKNRDDLY >gi|269838502|gb|ACXB01000009.1| GENE 139 152822 - 154249 1522 475 aa, chain - ## HITS:1 COG:L324 KEGG:ns NR:ns ## COG: L324 COG4690 # Protein_GI_number: 15673540 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidase # Organism: Lactococcus lactis # 9 472 10 473 474 372 43.0 1e-103 MTDRIEMSACTSVMVGKQASLDGATYISRNEDRLVAIHPKRFLVQPAVSGRQEIYKSPYN GLTVPLPESGYRYTSTPNADESEGPNEEDGFNEKNVGESATESVYANERVLAYDPFVKNG LAEDSMTTLVLPFIDSARDGVRYLGELVKKYGSAEGNGVQFNDADEVWYMEIVTGHQWVA VRIPDDCYAVAANQIAIEDIDFNDPDNYMWADGIQEFVEKHGLNPDEDRWNFRHIFGTDT EKDHHYNTPRVWFAQRYLNPEIEQDPESPDLPFIRKASRKISVEDIQYILKSHYNETKYD PLGSGSEHDRKTYRAISLSRTANSHILQMRNSHENEAAGVQWIGFGVPSFCPHVPFFTNA NDTDVSYRELPEEMSLDSAYWLYETLAMVVESHYAEFIQDDLDYQKELSQWARTKIEEVD QVAKKMSGKELTKYLTEQNHLIAQHYNKETKKLLAKLTKQGAELSKLTFKMDPNL >gi|269838502|gb|ACXB01000009.1| GENE 140 154274 - 154627 374 117 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0169 NR:ns ## KEGG: PEPE_0169 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 6 117 8 119 120 147 68.0 8e-35 MSKSPKLTDADLKELVFKKNPRVNYKVEGEQVTIIRAQNHWIQQFLRKLHFKIPEFTYLD LDEYGSFVFQQIDGQRSAYEIGQNLGERFEEANDYLYSRLLLYLKQLEVNEQIIERV >gi|269838502|gb|ACXB01000009.1| GENE 141 154620 - 156554 2092 644 aa, chain - ## HITS:1 COG:VNG6268C KEGG:ns NR:ns ## COG: VNG6268C COG1297 # Protein_GI_number: 16120189 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Halobacterium sp. NRC-1 # 30 597 40 612 655 181 26.0 4e-45 MAQNVSKKDYGGNGRSKYVPYVTKKGHGGSIAILIMGIILAVIFGASTAYSGMKAGLTVA AGIPGSIIGSGLVSLFAKKKGILGKNILQGMSSGGEAIASGMIYVLPAIILIGGHVNFFT GVMVGALAVMFAIGSASLVQNYLIVEEHGRLAYPESMAITEALVASESGGDSLKFLGVGF GIGGLITLFTSQVFGWVNSMITFTGNSFYRWKMSTEVNPMLAGIGFVVGLEVAMTMFAGS ILSNFAVVPLVSYFAQMAGSGAHVWNDAALSISQMSVDDVAGSYVKYIGAGMMLCGGIIG AVKLIPVIWTSIKKVLNARNSTTEDKNAFGLIALLASVIAIFIAGFIISGSVVVALLGGV LTLVLSLLFVIVSARLAGTIGCSNEPVSGMTIASLVIMTLAFVLMGWTTKNYTEILLLFG VFIVTTVSVGGGYMQTQKVNYMIGGSNKEMMKYYMIAGFVGVLTVIGTTVLLEPQLRITG SNPPFGLPQANLIATLTSGIMSGDLPWIMIIVGIVMALVFWMLDLPIMTVALGFYLPIST TSIILVGALLKLLINKTTKDKELRDKRVQSGVSLSSGLIAGGSIIGLVGIIFHVTGLLGN SAPSGFLASNAMGLILLAAMAGAIIIPLYMIKKSENQGKAEERE >gi|269838502|gb|ACXB01000009.1| GENE 142 156615 - 156782 146 55 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFNNSASTYSYQVALLPNHCLLKKAESLPDWDSFLPFQTQNYFSLLKFSGYLFFK >gi|269838502|gb|ACXB01000009.1| GENE 143 156737 - 158080 1461 447 aa, chain - ## HITS:1 COG:SA1270 KEGG:ns NR:ns ## COG: SA1270 COG0531 # Protein_GI_number: 15927018 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Staphylococcus aureus N315 # 4 438 3 437 440 485 63.0 1e-137 MNDNSTSLKKTIGFFPALATVMGTVIGTGVFFKAAAVTEYTGTVSMALFAWLLGGLISIC AGLTGAELAAMFPETGGLTRYIEHTYGHFWGFLAGWAQAIIYFPANVAAIAIAFGTQFTN LFNLSQTWIVPVAIITALSLLLVNCISAKFGGWVTSVALVVKLIPLAVIVLLGFFHSSSV NFSLFPVVAGPHRAFWTALGNGLLATMFAYDGWIHVGNIAGEMKNPRKDLPKAIALGIGL IMVVYLLVNAVFLYIAPVNHVAGNLNIASDVAKVIFGGIGGKFVTIGILISVYGGLNGYT MTGMRIPYVMGKEHKLPFGDVFAKLNEAGVPWAAGVIQYLIACLMMLSGQFDAITNMLIF VIWFFYCMAFVAVFILRKRTPNANRPYKVPLYPVIPAIALVGGVFILVNTLFTQFTTTAI GIVATAVGVIFYYYLKNKYPENFKSEK >gi|269838502|gb|ACXB01000009.1| GENE 144 158062 - 158247 64 61 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MYYYHSLIITPHCSNFNYFKKGTLQFMQHPLDFQSAIACLIILSNPSFVCINWGEEVINN L >gi|269838502|gb|ACXB01000009.1| GENE 145 158188 - 159240 1272 350 aa, chain - ## HITS:1 COG:SA1271 KEGG:ns NR:ns ## COG: SA1271 COG1171 # Protein_GI_number: 15927019 # Func_class: E Amino acid transport and metabolism # Function: Threonine dehydratase # Organism: Staphylococcus aureus N315 # 8 350 4 346 346 395 62.0 1e-110 MKNNEPRNEVVAQTYDLLNLDQIEEARKVIGKYARRTPLVQSMFLSNNVAHADVYLKLEN MQLTGSFKFRGANNKINHLSDEEKKHGVITASAGNHAQGVALTGKLSGIDTTVVMPDEAP QMKRDATRGYGAEVDIHGATFDDAHDWMHERAEKEGKTIVDPFNDSLVCAGQGTIGLEIL EDLVDVETIIVPVGGGGLISGIATAVKSINPSIHVVGVQSENVHGMKASVDAGKIVKHHD DFTLADGTDVAVPGDITYGIVSKLVDEIVLVSEEEISKAMKDLMQRTKIVAEGAGALPTA ALEAGKIDKKWIEGKKVVALVSGGNVDLQRVSQIIDHFFSPVDTHKAGIG >gi|269838502|gb|ACXB01000009.1| GENE 146 159290 - 160396 1250 368 aa, chain - ## HITS:1 COG:SA1272 KEGG:ns NR:ns ## COG: SA1272 COG0686 # Protein_GI_number: 15927020 # Func_class: E Amino acid transport and metabolism # Function: Alanine dehydrogenase # Organism: Staphylococcus aureus N315 # 1 366 1 367 372 459 68.0 1e-129 MQIAVIKEQKEGEGRVAATPENVQKMVDAGNEVLVEKDAGIGAGFSNEEFEKAGGKIVSH EDAWKAELCIKVKEPDAEEYQYFDKGKIIWGFQHLASSKPTVEAMMKAGVTAIGGETIVK DGKLELLAPMSQIAGRRSVIMGAYYLEAQHQGEGILVSGIPGVIPAGHVVIFGGGNAATG AADTALGLGCSVVIIELNDDRIAQLEEQYKGKDVRVVKSNEENLAKEIKDADIFVSTILI PGSKPPKLVKEYMVKSMKKGSVIADIAIDQGGTVETIDHPTTIDDPVFIKDGVIHYAVPN QPGAVPRTATMALAAGNLDYILEIADKGIEGAIKEDKALASGVNLYEGKVTNKGLADSLD LPYTELDV >gi|269838502|gb|ACXB01000009.1| GENE 147 160806 - 162230 1644 474 aa, chain - ## HITS:1 COG:CAC1346 KEGG:ns NR:ns ## COG: CAC1346 COG2160 # Protein_GI_number: 15894625 # Func_class: G Carbohydrate transport and metabolism # Function: L-arabinose isomerase # Organism: Clostridium acetobutylicum # 1 473 1 473 488 561 57.0 1e-159 MKKMQDYEFWFITGSQFLYGEETLRSVEKDAREIVDKLNESKNLPYPVKFKLVATTAENI TQVMKDANYNDKVAGVITWMHTFSPAKNWIRGTKLLQKPLLHLATQFLNHIPYDTIDFDY MNLNQSAHGDREYAFINARLRKNNKIITGYWGDEDIQKQIAKWMDAAVGYNESFGIKVVT FADKMRNVAVTDGDKIEAQIKFGWTVDYWGVADLVEEVNAVAEDDINNKYEEMKKEYNFV EGENSSEKFEHNTKYQIREYFALKKFMDDRGYTAFTTNFEDLAGLEQLPGLAVQMLMAEG YGFAGEGDWKTAALDRLMKIIAHNQHTAFMEDYTLDLRKGHEAILGSHMLEVDPTLASDT PRVEVHPLDIGGKDDPARFVFTGMEGDAVDVTMADYGDEFKLMSYDVQGNKPEKETPHLP VAKQLWTPKQGWKKGAEGWLTLGGGHHTVLSFNVDAEQLQDLSNMFGLTYVNIK >gi|269838502|gb|ACXB01000009.1| GENE 148 162264 - 162992 808 242 aa, chain - ## HITS:1 COG:CAC1341 KEGG:ns NR:ns ## COG: CAC1341 COG0235 # Protein_GI_number: 15894620 # Func_class: G Carbohydrate transport and metabolism # Function: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases # Organism: Clostridium acetobutylicum # 1 230 1 230 233 311 66.0 6e-85 MLEKLKQEVYEANMQLPKLDLVTFTWGNVSGIDREKGLFVIKPSGVSYEEMKPEDMVVVN LKGEVVEGDMNPSSDTPTHTVLYNEFPDIGGIVHTHSPWAVSFAAAEIDVPALSTTHADT FYGDVPVTPALTKQEIEEAYEENTGKVIVREFKERNLDHNAVPAVLVSQHGPFTWGATPD KAVYNAKVLEVAAEIDYHALQMTRRNIEVPQYLLDKHYYRKHGKNAYYGQNNAKSKEHAQ RK >gi|269838502|gb|ACXB01000009.1| GENE 149 163007 - 164602 1534 531 aa, chain - ## HITS:1 COG:CAC1344 KEGG:ns NR:ns ## COG: CAC1344 COG1070 # Protein_GI_number: 15894623 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar (pentulose and hexulose) kinases # Organism: Clostridium acetobutylicum # 9 529 10 531 534 622 56.0 1e-178 MNIVEISNQIEQGNVALGIELGSTRIKTVLITNDYKTIASGSFVWENQYKDNIWTYSLED VWKGIQTSYSKMAAEVKSKYHKPLTKIKSIGISAMMHGYLAFDQSGDLLVPFRTWRNNIT EESAAKLTEAFNFNIPQRWTIAHLYQAILNGEDHVENLDFVTTLAGYVHWKLSGEKVLGV GDASGVFPIDEQTGNYSENMLATFANLPEVKPFNWDIKRVLPSVKKAGENAGQLSAQGAK LLDITGNLQAGSLMAPPEGDAGTGMVGTNSVRKRTGNISVGTSAFSMVVLEKPLKSVHRD IDVVMTPDGAAVAMVHVNNCSSDINAWAQIFNEFATRLGINLTPDKLYEALFLEAAKADH DLGGLVNYSYQSGENITNIKAGRPLFVRKPDSHFNLPNFMQTQLYSAFAPLKIGMDILSK EENIKTDVMIAQGGLFRTAVIAQQVLSDALNTPITVMSNAGEGGPWGMAILAMYAADNQG QSLRDYLDYNVFNNPESMTLSPEPEGVAAYNEFTKHYEAGLPVEARAGEVI >gi|269838502|gb|ACXB01000009.1| GENE 150 164622 - 165992 1526 456 aa, chain - ## HITS:1 COG:CAC1345 KEGG:ns NR:ns ## COG: CAC1345 COG0477 # Protein_GI_number: 15894624 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Clostridium acetobutylicum # 5 450 3 439 455 308 43.0 2e-83 MGKEKKIPSGFIYFFGSFGGILFGYDIGVMTGALPFLQHDWNLYGDAGVIGWITSAVMFG AIFGGALAGNLSDRLGRRKMILISSLIFVIGSLLSALSPHDGQIYLIIVRIFLGLAVGAA SALVPAYMSEMAPARLRGRLSGINQTMIVSGMLLSYIVDFLLKDLPETMAWRLMLGLAAV PAIILYFGVLRLPESPRFLVKSNDVEAARRTLTYIRNEAEVEPELKTIQETAAEEASANE KSSFAQLLNGKYRYLVIAGVGVAAFQQFQGANAIFYYIPLIVEKATGNAASSALMWPIIQ GIILVLGSLVFLWIADKFKRRTLLTMGGTIMGLSFILPAILNMFIKDMNPMMIVVFLCIY VAFYSFTWAPLTWVIVGEIFPLAIRGKASGVASSFNWIGSFLVGLLFPIMTANMPQEAVF AIFGIICLLGVLFIRTRVPETKGHSLEEIEEQGLRK >gi|269838502|gb|ACXB01000009.1| GENE 151 166189 - 167160 1039 323 aa, chain - ## HITS:1 COG:BS_araR KEGG:ns NR:ns ## COG: BS_araR COG1609 # Protein_GI_number: 16080450 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 1 323 61 383 384 259 40.0 3e-69 MSRYTIRRAVGDLENDHYIYRVQGGGMFVDDWQKYVNQKVENKVIGVITTHIAEYIFPYI ITGIDRLISSRGYSILISNTQNDPARERKSVQKMMDSNLSGLIVEPTQSALGNPNRDLYE KIKESKLPTVFINAHYPELDFPYAEMADTRAEKIITNKLISMGHQKILGVFKVDDQQGVH RMNGFIKAYKEHQDLVYQSEIVMYQTSDNMRSVFTKIEQILSRSPNERPTAIICYHDQIA IQVMALARSLGLRMPDDISIFGFDNYKLSKYMSPQLSSVEHPKEKLGRDAAKMIFDMIDG KTDIQNKIYEPEIIYRESIKELS >gi|269838502|gb|ACXB01000009.1| GENE 152 167469 - 168500 998 343 aa, chain + ## HITS:1 COG:BH2755 KEGG:ns NR:ns ## COG: BH2755 COG2017 # Protein_GI_number: 15615318 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose mutarotase and related enzymes # Organism: Bacillus halodurans # 1 339 1 345 348 199 33.0 5e-51 MHIDILKFDQFRGHQVEKIRLTNDHNVSVGVLTMGAILNEFSVPQADGRKNLVLSFDQTK KYYDNPFYIGMAIGRTAGRIKDGTMPLAKGAVHLPPNENNNTHHGGPHGFFDYLWDYHLQ KGEDFLSVTFTHQIKESDDGYPGNIAVAITFKLTNDDQVIITYQGTADQPTLFNPTCHAY FNLSNHDHVLNHQLTIASAQYLAVDQQKVPTGEFLATASTAYDFRQPVKLQDAIAALQST PEKGLDDIFKINENAAPIAKLQDLDSKDALEIYSKRNGLVVYTANALDETLSFTRGPGRP QMGIAMEAQTLPDTHNHPGFGDITLSANEPQSYTITYRYLKGN >gi|269838502|gb|ACXB01000009.1| GENE 153 168808 - 169656 866 282 aa, chain + ## HITS:1 COG:no KEGG:LC705_00065 NR:ns ## KEGG: LC705_00065 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 8 269 3 264 280 313 66.0 3e-84 MKRSVNDYSSLWQRIKNEKKIYLISLVLVLIADGIGEVTLKIGNGVIIFFPVFYAIILGI MLGPQVLKIIRPVETTAAGKLVLVGICPFIVKLGITAGANLHLILNAGPALLLHGFGSLL GPILALPIAMLLGLHRETIGACSSLNREYHLAVINNAYGAESAESNGSLALYIVGGMIGA IYFGIMASLIASTGWFTPQALGMASGVGAGIFMASASASLANAFPAHAAVITTMASASNT IAGITGIYITMWLALPLTEKYYDLLCKIFRLQTQRHLKLNRG >gi|269838502|gb|ACXB01000009.1| GENE 154 169660 - 170106 328 148 aa, chain + ## HITS:1 COG:no KEGG:LC705_00064 NR:ns ## KEGG: LC705_00064 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 148 1 148 148 168 67.0 6e-41 MRYREWTFLLIVCGIGTGLANWIGYGISFQKSLNGIFALTVITLLAVLCVKYLPLKLPLI AYCSILGLLGAAPFSPVHAWLISSANAIEFAAPFTIVGSFAGIAISDQLQRFVSQGWKYV IVGVLVMTGTFLGSCLWDSLTLGLTKLL >gi|269838502|gb|ACXB01000009.1| GENE 155 170124 - 171422 983 432 aa, chain + ## HITS:1 COG:MA1276 KEGG:ns NR:ns ## COG: MA1276 COG0402 # Protein_GI_number: 20090140 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Methanosarcina acetivorans str.C2A # 1 429 11 433 442 187 31.0 4e-47 MSDILIKNATILKQAGQINTKQSILIHDGHIQQVGDFPCPIKFTGEIIDGADRLYLPGLI DSHLHTGQQLLRGRVLDAKPVIWTRVMLPFESQLTASEMKLSAELAALEMITSGTTGFVE AGSYHMESAAEVYARSGLRGALTASTMDDPQLPASIKMSAREAVAQTTQLYQQFHYQGRL QVYYSLRALTACSDELIDLAAEAAQTHHTFLTAHMNEYPTEILNIIQRTGLRPYEWLAKR HLLNDHFLGAHSLFLSTQERKLIKKYQVKLCHCPFSNAGKGIPVTPELLQNQISVGLGTD GAAHGGLSLWNEIKIFRSLMVATHGLRLRQPNVMPAAQIFQMLLEGGAAALNHAGQLGKI QPGYKADLIAIDLDQPHLYPSDNWQNTLLECVNANDVTDTMVDGQFLMRNRQVLTLDQER MMAEARNYACPL >gi|269838502|gb|ACXB01000009.1| GENE 156 171654 - 173087 1473 477 aa, chain - ## HITS:1 COG:VC1826_3 KEGG:ns NR:ns ## COG: VC1826_3 COG1299 # Protein_GI_number: 15641828 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, fructose-specific IIC component # Organism: Vibrio cholerae # 130 465 14 347 359 246 45.0 5e-65 MKKIVGVTKCPVGIAHTYMAAEKLKAAAEAAGYEAKVETQGASGTENPLTQAEIDAADYV ILAVDVAIDGMERFNGKKVLFSKTSAAIKDSAALVEKVTDAPVYYAGKTSAASTQTTDNA KGQNPAIKQLLNGVSHMIPFVVVGGLFIALSIALGGHPTANAGMVVTPGTIWSSMNQIGT LGFTLMIPILAGFTAHAIAGRAALAPAMIGAMVANSPDILGTKAGTGFLGAILVGFAAGY LVKWMNSWPIPKNLRSVMPIFVIPLLGTAIISAAFIYLLGGPISALMTLLQNMLDTLSAS PSTSVLLGLILGAMVAIDMGGPINKVAFLFGVASITAGNPMIMGAVACSVSVPPLSSGLA TLIRPDLNVNEEERSAGISAMLMALIGITEGAIPLATTRPGQVFPGIIIGSAVAGATGMI FKITDAVPHGGPIVGVLGATNNLGLFIIAILTGTAVSVLIIAILKIRAGKKAAKQLS >gi|269838502|gb|ACXB01000009.1| GENE 157 173113 - 173565 540 150 aa, chain - ## HITS:1 COG:VC2531 KEGG:ns NR:ns ## COG: VC2531 COG1762 # Protein_GI_number: 15642526 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Vibrio cholerae # 19 146 21 148 148 81 36.0 5e-16 MDSDVKCAAFIDVKVAPQKEAALATTAELLANQWSIDGKELYASFVNREAESSTGFGDGI AIPHAKVSGLEAPVVGILTYADPVEWAAIDEQPVSLAIALIVPTKADQVHLRLLSKLARK LVDHDYAERLRRSAHDAAQLTKQVQQALTE >gi|269838502|gb|ACXB01000009.1| GENE 158 173569 - 175488 1237 639 aa, chain - ## HITS:1 COG:lin0445_1 KEGG:ns NR:ns ## COG: lin0445_1 COG3711 # Protein_GI_number: 16799522 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Listeria innocua # 3 479 4 491 508 208 28.0 3e-53 MHDREAEIVEFLIHHGVVHYEQIAKATKLSKRSIANYLDIIENDAQPFNLKLTRKPNVGI YLNGQLRNKQDFLAALKLHSGFTSKEARIRYLLTKLLDADRSYTLNELADDLYVSRSTLE SDFKQIREFFNEHHVKIKRGANGIAIRASGEQRERLMAKILKTYWGQNISVIQDANGQIA STLKLPDYLLNFFPADLVQAVLAGITDFMVTSRLELTDYDLQSLAIHLIINTDDKVTNDV ESLGPDLIPETSQLLNAIKKQRTINFSATGLQRVNRYLEVIVARQKNSYQASDVAQTEKQ YYQFLLDKLAELEPDEVLLRDLAIHLATAVDRLKKGIVIDNPYTDEIKMNLPIAFDVAIQ LGEAIETQYPVQLHDAELGYLALHFEAFFERCHLHAPIETVVVSSAGVGASQLLAQRLEE RFNNSLKVTRILDLATVMKTNLSEKMVVSTIPIYGLKQPVILVSPLLPPEDIQQINHAII SLTKNNHSNSFFNLLDPQLIQIDSVKKSYVTVLEEIVGSLTKQNILVNNPKILEMLVERE KMSSTALNAVAIPHIAPNYVQKSAIALWLVPQGVQWLGNTVYVVIFLALTREQVAASREV YQILNRMVENTAFCQQLAQVATASEAMEHIQKFIQKEGD >gi|269838502|gb|ACXB01000009.1| GENE 159 175708 - 176121 208 137 aa, chain - ## HITS:1 COG:no KEGG:PEPE_1706 NR:ns ## KEGG: PEPE_1706 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 5 133 83 211 217 163 62.0 2e-39 MTEHRNANRNILWLCRCTCGRIVEEDGYNLRHGVVKSCGCLRKESSATRIRQIKATKTNI GNREAFKDEYGNPIQAIKIGKRNTSGVIGVSYDKKNQKWVARLMIKGTLVLNNSFADFES AIAARKTAESKYLKKLI Prediction of potential genes in microbial genomes Time: Fri May 27 06:36:49 2011 Seq name: gi|269838501|gb|ACXB01000010.1| Pediococcus acidilactici 7_4 cont1.10, whole genome shotgun sequence Length of sequence - 4869 bp Number of predicted genes - 6, with homology - 5 Number of transcription units - 3, operones - 2 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 281 - 340 5.0 1 1 Tu 1 . + CDS 441 - 605 68 ## - Term 543 - 585 1.0 2 2 Op 1 2/0.000 - CDS 645 - 1562 1210 ## COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase 3 2 Op 2 . - CDS 1577 - 2821 1242 ## COG0591 Na+/proline symporter 4 2 Op 3 . - CDS 2818 - 3084 292 ## COG0591 Na+/proline symporter - Prom 3275 - 3334 3.4 - Term 3217 - 3257 -0.9 5 3 Op 1 . - CDS 3338 - 4069 648 ## lp_3566 hypothetical protein 6 3 Op 2 . - CDS 4050 - 4868 683 ## COG1940 Transcriptional regulator/sugar kinase Predicted protein(s) >gi|269838501|gb|ACXB01000010.1| GENE 1 441 - 605 68 54 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNRFLFKDFCHSPLFLCACGLACITCFDFYSSKKVFKNVKSKKVTFPFTYISTN >gi|269838501|gb|ACXB01000010.1| GENE 2 645 - 1562 1210 305 aa, chain - ## HITS:1 COG:SPy0257 KEGG:ns NR:ns ## COG: SPy0257 COG0329 # Protein_GI_number: 15674437 # Func_class: E Amino acid transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: Dihydrodipicolinate synthase/N-acetylneuraminate lyase # Organism: Streptococcus pyogenes M1 GAS # 4 289 3 288 304 333 57.0 3e-91 MTKNLDKYKGIIPAFYACYDDEGNVSPERVQKLAKYYLGKGVKGLYVGGSSGECIYQTVE ERKLVLENVMKAVGGQMTIIAHVAAPSTRDSIELAKHAEKLGVDALAAIPPIYFVLPEPA IEAYWTSIMEATNLDFIIYNIPQTTGYALSENLFKKMMTKEQVIGVKNSSMPVMDINMWK LRAPKENIIFNGPDEQFVGGRVMGADAGIGGTYGVYPELLLEADRCVREGELDKALEIQL CVNDLISQLTSFKGNLYDVMKLILAQRGVAVGRARYPLPHVEESEMDRVTEVRENIDKAI EKYVG >gi|269838501|gb|ACXB01000010.1| GENE 3 1577 - 2821 1242 414 aa, chain - ## HITS:1 COG:SA0303 KEGG:ns NR:ns ## COG: SA0303 COG0591 # Protein_GI_number: 15926016 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Na+/proline symporter # Organism: Staphylococcus aureus N315 # 2 408 89 498 510 368 52.0 1e-101 MITPVLIKYYIPFFSKLRVTTAYEYLEFRFNPFLRVFSSILFVLFHIGRIAIVIYLPTVA LQSIININPYLIASLITILCIIYTYHGGMEGVIWSDVIQGILLLVGAVLIIFFAVQGTHG GLQTVAQDAVNKGKILTKADFVWSVTKSTVPIILLGQIFNTLYQYTASQDVVQRYTTSTD NKHIAKSIWTNALLSLITIPLFYGMGTVIYSFYQHGGSLPSGFNTSALVPYFVLTEIPAG VAGLIIAAIFAASQATIASSLNSTAACLVTDIQKRFMKDKSDRMSMRITRLSILICGIFG LLVTLVLIKLHSSDMIDTYLSLFGLFGVPIAGIFALGIVSQRANGFGATLGMIVTTAICY FIQTHGINALFVSVVGFLGAMILGYIFSFLKPGHQHDITGLTFKTIDQKVNLKN >gi|269838501|gb|ACXB01000010.1| GENE 4 2818 - 3084 292 88 aa, chain - ## HITS:1 COG:SA0303 KEGG:ns NR:ns ## COG: SA0303 COG0591 # Protein_GI_number: 15926016 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Na+/proline symporter # Organism: Staphylococcus aureus N315 # 1 87 1 86 510 96 58.0 9e-21 MVKQGFGVLNWLVLIAYLIIMLVIGLSFSKKSSKNSEEFFKASTSNVPAWAVGFSIFATT LSAITYMSTPEKSFLTNWAYAFGNLAIF >gi|269838501|gb|ACXB01000010.1| GENE 5 3338 - 4069 648 243 aa, chain - ## HITS:1 COG:no KEGG:lp_3566 NR:ns ## KEGG: lp_3566 # Name: not_defined # Def: hypothetical protein # Organism: L.plantarum # Pathway: not_defined # 3 227 2 227 243 206 46.0 5e-52 MKKVSINTAVFLNQLENGRSQSECLKQLIGKPIAAIEARGEFFQEDRRDLELATIQRLCK ENDWQFYYSIPEALFTEGQLNENIFDYLTMAKEFQIQRLKISLGDCQNTPASRLAKLQKA LRAYSGVVTVENQPNQDGQLEFFKDNLIKLLALVPELGYTFDSGNWYWIKEDPQRAFDSL KKWITVFHLKDIADLTTVRLGEGATNWQSMVQALNSEVPVFLEYGVATDEELDEEIQKVN LIL >gi|269838501|gb|ACXB01000010.1| GENE 6 4050 - 4868 683 272 aa, chain - ## HITS:1 COG:SA0305 KEGG:ns NR:ns ## COG: SA0305 COG1940 # Protein_GI_number: 15926018 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulator/sugar kinase # Organism: Staphylococcus aureus N315 # 3 255 26 285 286 162 39.0 7e-40 FTDTGKVNTEQNRNGHILKTLLQISQTIQERIELAGIGVSTAGIVGRDGSIQYAGPTIPN YIGTPIKTSLAAQANLSVSVVNDVDAALLGEVFTGQLVNQDVYCMALGTGIGGAHYRNGK IISGAHGQGNSVGYTLFDPQTNTNYEQRASTLVLERQLADKGVTVIDAFEKAKQGQATYE SIIERWANEVARGIAEVVVLFDPDYIVIGGAVSAQGQYLIDLFNKQLPVLLPLDFNRTTL KIAQQGNQAQLIGAIVPFLKKNKEKVNEKSID Prediction of potential genes in microbial genomes Time: Fri May 27 06:37:26 2011 Seq name: gi|269838500|gb|ACXB01000011.1| Pediococcus acidilactici 7_4 cont1.11, whole genome shotgun sequence Length of sequence - 94937 bp Number of predicted genes - 102, with homology - 96 Number of transcription units - 53, operones - 22 average op.length - 3.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 4/0.091 - CDS 148 - 1197 722 ## COG0392 Predicted integral membrane protein 2 1 Op 2 25/0.000 - CDS 1242 - 2258 815 ## COG0438 Glycosyltransferase 3 1 Op 3 1/0.273 - CDS 2289 - 3476 989 ## COG0438 Glycosyltransferase - Prom 3497 - 3556 3.0 4 2 Tu 1 . - CDS 3562 - 4335 543 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) - Term 4350 - 4390 6.1 5 3 Op 1 25/0.000 - CDS 4408 - 6132 1852 ## COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) 6 3 Op 2 . - CDS 6132 - 6398 386 ## COG1925 Phosphotransferase system, HPr-related proteins - Prom 6476 - 6535 6.0 7 4 Tu 1 . - CDS 6541 - 6729 249 ## PEPE_0608 hypothetical protein - Prom 6917 - 6976 5.8 + Prom 6706 - 6765 7.3 8 5 Tu 1 . + CDS 6945 - 9152 1637 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 + Term 9170 - 9232 10.1 - Term 9331 - 9379 11.5 9 6 Tu 1 . - CDS 9422 - 10399 872 ## COG0516 IMP dehydrogenase/GMP reductase - Prom 10471 - 10530 4.2 - TRNA 10708 - 10781 75.1 # Arg CCT 0 0 10 7 Tu 1 . - CDS 11018 - 11272 315 ## PEPE_0593 hypothetical protein - Prom 11455 - 11514 7.0 - Term 11494 - 11543 8.0 11 8 Op 1 . - CDS 11555 - 11791 358 ## PEPE_0592 hypothetical protein 12 8 Op 2 . - CDS 11803 - 12834 1150 ## COG1316 Transcriptional regulator - Prom 12857 - 12916 4.1 13 9 Op 1 1/0.273 - CDS 12928 - 14244 1051 ## COG0513 Superfamily II DNA and RNA helicases 14 9 Op 2 . - CDS 14251 - 15258 1156 ## COG0673 Predicted dehydrogenases and related proteins - Prom 15282 - 15341 8.2 15 10 Tu 1 . + CDS 15569 - 15949 544 ## PEPE_0588 hypothetical protein - Term 15905 - 15960 7.4 16 11 Tu 1 . - CDS 15990 - 16757 811 ## COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase) - Prom 16819 - 16878 6.7 + Prom 16752 - 16811 6.5 17 12 Op 1 . + CDS 16876 - 18198 1209 ## COG0531 Amino acid transporters 18 12 Op 2 . + CDS 18232 - 18759 430 ## PEPE_0583 glycopeptide antibiotics resistance protein + Term 18819 - 18863 13.3 - Term 18866 - 18921 7.2 19 13 Op 1 2/0.091 - CDS 18951 - 20876 1812 ## COG2217 Cation transport ATPase 20 13 Op 2 . - CDS 20876 - 21148 404 ## COG4633 Uncharacterized protein conserved in bacteria 21 13 Op 3 1/0.273 - CDS 21167 - 21538 385 ## COG4633 Uncharacterized protein conserved in bacteria 22 13 Op 4 . - CDS 21542 - 21997 359 ## COG3682 Predicted transcriptional regulator - Prom 22037 - 22096 7.0 + Prom 21996 - 22055 6.1 23 14 Op 1 . + CDS 22150 - 23061 964 ## LBA1082 hypothetical protein 24 14 Op 2 . + CDS 23061 - 23906 775 ## LC705_01164 DNA-entry nuclease + Prom 24116 - 24175 5.0 25 15 Op 1 . + CDS 24248 - 24553 189 ## gi|270290595|ref|ZP_06196819.1| predicted protein 26 15 Op 2 . + CDS 24577 - 25146 266 ## gi|270290596|ref|ZP_06196820.1| predicted protein + Term 25174 - 25210 -0.6 - Term 25201 - 25239 7.0 27 16 Op 1 . - CDS 25272 - 26276 720 ## COG2222 Predicted phosphosugar isomerases 28 16 Op 2 . - CDS 26304 - 27020 755 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 29 16 Op 3 . - CDS 27030 - 27128 139 ## 30 16 Op 4 13/0.000 - CDS 27182 - 27904 199 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 31 16 Op 5 9/0.000 - CDS 27925 - 28395 516 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 32 16 Op 6 1/0.273 - CDS 28420 - 28848 346 ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA - Prom 28870 - 28929 5.1 - Term 28894 - 28944 13.8 33 17 Op 1 . - CDS 28964 - 29692 671 ## COG2188 Transcriptional regulators 34 17 Op 2 . - CDS 29694 - 30167 294 ## gi|270290603|ref|ZP_06196827.1| predicted protein - Prom 30361 - 30420 7.0 - Term 30487 - 30524 -0.9 35 18 Tu 1 . - CDS 30533 - 31486 384 ## COG3274 Uncharacterized protein conserved in bacteria 36 19 Op 1 1/0.273 - CDS 31596 - 33011 856 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid 37 19 Op 2 5/0.000 - CDS 33014 - 34135 1278 ## COG0562 UDP-galactopyranose mutase 38 19 Op 3 . - CDS 34163 - 35080 176 ## COG1216 Predicted glycosyltransferases 39 19 Op 4 . - CDS 35105 - 36262 292 ## COG1887 Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC 40 19 Op 5 . - CDS 36293 - 37138 193 ## LJ1031 hypothetical protein - Prom 37237 - 37296 12.7 41 20 Op 1 . - CDS 37600 - 38760 721 ## COG1887 Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC 42 20 Op 2 . - CDS 38750 - 39676 479 ## COG1216 Predicted glycosyltransferases 43 20 Op 3 . - CDS 39748 - 40164 276 ## COG2148 Sugar transferases involved in lipopolysaccharide synthesis - Prom 40338 - 40397 8.7 44 21 Op 1 3/0.091 - CDS 40415 - 41203 734 ## COG4464 Capsular polysaccharide biosynthesis protein 45 21 Op 2 5/0.000 - CDS 41206 - 41952 652 ## COG0489 ATPases involved in chromosome partitioning 46 21 Op 3 . - CDS 41962 - 42744 467 ## COG3944 Capsular polysaccharide biosynthesis protein 47 21 Op 4 . - CDS 42760 - 43881 892 ## COG1680 Beta-lactamase class C and other penicillin binding proteins - Prom 43909 - 43968 7.9 - Term 44036 - 44074 4.4 48 22 Tu 1 . - CDS 44117 - 44521 392 ## COG0615 Cytidylyltransferase - Prom 44550 - 44609 6.9 - Term 44585 - 44636 7.2 49 23 Tu 1 . - CDS 44693 - 45406 696 ## PEPE_0563 Zn-dependent protease - Prom 45482 - 45541 5.2 50 24 Tu 1 . - CDS 45543 - 47297 1653 ## COG0514 Superfamily II DNA helicase - Prom 47324 - 47383 5.7 51 25 Tu 1 . + CDS 47625 - 47756 91 ## - Term 47724 - 47763 6.5 52 26 Op 1 1/0.273 - CDS 47798 - 48475 653 ## COG0819 Putative transcription activator 53 26 Op 2 11/0.000 - CDS 48457 - 49137 770 ## COG0352 Thiamine monophosphate synthase 54 26 Op 3 12/0.000 - CDS 49127 - 49948 859 ## COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase 55 26 Op 4 . - CDS 49954 - 50748 655 ## COG2145 Hydroxyethylthiazole kinase, sugar kinase family - Prom 50775 - 50834 2.7 + Prom 50981 - 51040 5.4 56 27 Tu 1 . + CDS 51143 - 51367 439 ## gi|270290623|ref|ZP_06196847.1| hypothetical protein HMPREF9024_00807 + Term 51376 - 51402 -1.0 - Term 51586 - 51631 2.1 57 28 Tu 1 . - CDS 51693 - 52292 610 ## COG3397 Uncharacterized protein conserved in bacteria - Prom 52317 - 52376 9.8 - Term 52571 - 52625 1.5 58 29 Op 1 . - CDS 52666 - 53451 714 ## COG3548 Predicted integral membrane protein 59 29 Op 2 . - CDS 53476 - 54288 667 ## COG3475 LPS biosynthesis protein - Prom 54311 - 54370 7.1 + Prom 54333 - 54392 5.0 60 30 Tu 1 . + CDS 54412 - 54558 199 ## + Term 54604 - 54652 4.9 + Prom 55467 - 55526 5.4 61 31 Tu 1 . + CDS 55552 - 56205 435 ## gi|270290627|ref|ZP_06196851.1| conserved hypothetical protein + Prom 56262 - 56321 2.2 62 32 Tu 1 . + CDS 56341 - 56553 83 ## - Term 56514 - 56560 12.4 63 33 Tu 1 . - CDS 56600 - 57637 993 ## COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases - Prom 57668 - 57727 8.4 + Prom 57654 - 57713 10.9 64 34 Tu 1 . + CDS 57738 - 59288 848 ## LCK_00908 aspartate/tyrosine/aromatic aminotransferase + Term 59442 - 59488 3.1 + Prom 59433 - 59492 6.6 65 35 Tu 1 . + CDS 59552 - 60013 286 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - Term 59980 - 60018 -0.9 66 36 Op 1 . - CDS 60024 - 60959 1054 ## COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases 67 36 Op 2 . - CDS 60940 - 61050 58 ## - Prom 61094 - 61153 2.4 + Prom 61118 - 61177 5.2 68 37 Tu 1 . + CDS 61372 - 62514 1099 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases + Term 62551 - 62601 14.1 - Term 62546 - 62582 0.4 69 38 Op 1 . - CDS 62598 - 62930 344 ## COG1694 Predicted pyrophosphatase 70 38 Op 2 . - CDS 62994 - 63857 371 ## gi|270290634|ref|ZP_06196858.1| predicted protein - Prom 63890 - 63949 2.5 + Prom 64148 - 64207 6.8 71 39 Tu 1 . + CDS 64247 - 64870 626 ## COG2095 Multiple antibiotic transporter + Term 64897 - 64947 4.5 - Term 64885 - 64935 6.6 72 40 Op 1 . - CDS 64958 - 66139 778 ## COG2814 Arabinose efflux permease 73 40 Op 2 . - CDS 66179 - 67219 1221 ## COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases - Prom 67367 - 67426 6.8 + Prom 67326 - 67385 5.8 74 41 Tu 1 . + CDS 67407 - 68270 654 ## COG0583 Transcriptional regulator + Term 68399 - 68445 -0.4 - Term 68345 - 68375 0.4 75 42 Op 1 6/0.000 - CDS 68465 - 69871 1122 ## COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component 76 42 Op 2 19/0.000 - CDS 69864 - 70304 331 ## COG0822 NifU homolog involved in Fe-S cluster formation 77 42 Op 3 24/0.000 - CDS 70301 - 71476 1076 ## COG0520 Selenocysteine lyase 78 42 Op 4 41/0.000 - CDS 71478 - 72539 528 ## COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component 79 42 Op 5 . - CDS 72520 - 73296 186 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 80 42 Op 6 12/0.000 - CDS 73311 - 73898 293 ## COG0602 Organic radical activating enzymes 81 42 Op 7 . - CDS 73909 - 76059 1591 ## COG1328 Oxygen-sensitive ribonucleoside-triphosphate reductase - Prom 76107 - 76166 2.7 - Term 76496 - 76543 10.1 82 43 Tu 1 . - CDS 76583 - 77323 855 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - Prom 77367 - 77426 3.8 + Prom 77690 - 77749 4.9 83 44 Op 1 4/0.091 + CDS 77772 - 78347 547 ## COG4721 Predicted membrane protein 84 44 Op 2 . + CDS 78358 - 79785 1167 ## COG1122 ABC-type cobalt transport system, ATPase component 85 44 Op 3 . + CDS 79769 - 80422 572 ## LEUM_0766 ABC-type cobalt transport system, permease component CbiQ related transporter + Term 80494 - 80541 6.1 - Term 80481 - 80529 8.1 86 45 Tu 1 . - CDS 80585 - 80887 408 ## COG0607 Rhodanese-related sulfurtransferase - Prom 80922 - 80981 3.4 + Prom 80872 - 80931 6.8 87 46 Tu 1 . + CDS 81020 - 82399 1107 ## COG4690 Dipeptidase - Term 82417 - 82482 12.3 88 47 Tu 1 . - CDS 82499 - 83890 1459 ## COG0017 Aspartyl/asparaginyl-tRNA synthetases + Prom 84239 - 84298 7.8 89 48 Tu 1 . + CDS 84329 - 84562 216 ## + Term 84571 - 84616 5.1 + Prom 84588 - 84647 5.3 90 49 Tu 1 . + CDS 84767 - 85555 241 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 + Term 85577 - 85621 8.2 - Term 85630 - 85674 9.8 91 50 Op 1 . - CDS 85745 - 86269 572 ## COG1695 Predicted transcriptional regulators 92 50 Op 2 . - CDS 86291 - 86827 768 ## COG3479 Phenolic acid decarboxylase - Prom 86973 - 87032 5.1 - Term 86973 - 87013 5.0 93 51 Op 1 2/0.091 - CDS 87078 - 87485 503 ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA 94 51 Op 2 3/0.091 - CDS 87502 - 88497 1131 ## COG2222 Predicted phosphosugar isomerases 95 51 Op 3 3/0.091 - CDS 88522 - 89598 798 ## COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains 96 51 Op 4 13/0.000 - CDS 89620 - 90441 922 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 97 51 Op 5 13/0.000 - CDS 90422 - 91252 707 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 98 51 Op 6 1/0.273 - CDS 91269 - 91742 418 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 99 51 Op 7 1/0.273 - CDS 91760 - 92452 745 ## COG2188 Transcriptional regulators 100 51 Op 8 . - CDS 92454 - 93179 565 ## COG2188 Transcriptional regulators - Prom 93294 - 93353 8.5 - Term 93340 - 93379 1.6 101 52 Tu 1 . - CDS 93494 - 94174 618 ## COG1011 Predicted hydrolase (HAD superfamily) - Prom 94197 - 94256 5.2 + Prom 94217 - 94276 5.5 102 53 Tu 1 . + CDS 94337 - 94876 408 ## PEPE_0481 hypothetical protein Predicted protein(s) >gi|269838500|gb|ACXB01000011.1| GENE 1 148 - 1197 722 349 aa, chain - ## HITS:1 COG:lin2698 KEGG:ns NR:ns ## COG: lin2698 COG0392 # Protein_GI_number: 16801759 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Listeria innocua # 11 333 25 346 357 206 37.0 4e-53 MILAGLVIFGYSLRGVNLHQVSHDILNLNVGWLLVALLCIILYLGFEAVATKVLVESNGD RLSWKDAIRIPLIEQLFNGLTPFSSGGQPAQLVALMQSGIEGGRASSVLLMKFVVFQSMV VLNFIFSLLIGFQYLEDKIKFLSWFVLFGFLIHLAVIIGLLMIMYWHNFTKKMFDLIFIP IKRFTKPERYLRWKTSIDAKVDTFYLESVRMKSQWRLLAKVALLTFLQLLFYYLIPYFIL LALGKTHVHLIMVTCLHVLIFMVISLFPIPGGAGGAEYGFSVIFAQFVGNSSKLVLAMII WRLLTYYFGMFAGMFATVIKPNRINRIVPKKRANKLVFLFFFKKSLDLI >gi|269838500|gb|ACXB01000011.1| GENE 2 1242 - 2258 815 338 aa, chain - ## HITS:1 COG:lin2699 KEGG:ns NR:ns ## COG: lin2699 COG0438 # Protein_GI_number: 16801760 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Listeria innocua # 3 337 2 338 341 370 54.0 1e-102 MPIKVNMFSSASKVKGQGVGSAYEELIRLLKTHFPKEIDLSINRYTQADISHYHTIDPQF FVSTFTKKRGVKVGYVHFLPETIEGSLKIPQPFRWLFYKYIIAFYKRMDQIVVVNPTFID QLVKYGIKREIITYIPNFVRKDEFYQYDAEQRRQVREQLGVQDRFTILGIGQVQERKGVK DFIKLAQQHPEMYFIWAGGFSFGRLTDGYADLKKVVDNPPANLKFTGIVDRNKLVEYYNA ADLFLLPSYNELFPMSVLEAFSCGTPVMLRDLDLYHSIIKGYYIAADNYAEMDQKLSALV KNPAQLRGYQQRADQASAEYSEDHLAEIWLNYYSSLLK >gi|269838500|gb|ACXB01000011.1| GENE 3 2289 - 3476 989 395 aa, chain - ## HITS:1 COG:SPy0516 KEGG:ns NR:ns ## COG: SPy0516 COG0438 # Protein_GI_number: 15674620 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Streptococcus pyogenes M1 GAS # 1 374 1 376 444 360 49.0 2e-99 MNIGLFTDTYFPQVSGVATSIKTLRDQLEKQGHQVYIFTTTDPKVDTNVYERNVFRFTSI PFVSFTDRRIAISGFIRATQIAKELNLDIVHTQTEFSLGWMGKFVAKALKIPVIHTYHTM YEDYLHYVANGKLLKPYHVKQMTRAFCYHIDGIVAPSERVQRTIQRYGIQVPTRIIPTGV NLEQYQKDSNPQQCREALGYDAKTPVLLSLSRLAYEKNIQEVIDCFPAILKEVPDAQLLI VGDGPARTSLENQVHDLGLEKHVKFTGEINNDQVYRYYQAADLFVSASDSESQGLTYIEA MASHLKVVAKSGPYTDELLDDPSLGKVFDTEAQLVQAIKRYIEHPDEFNDPRPREKKLYE ISADYFGKRIVDYYNSAISAHADLEHGSKKESELE >gi|269838500|gb|ACXB01000011.1| GENE 4 3562 - 4335 543 257 aa, chain - ## HITS:1 COG:L34494 KEGG:ns NR:ns ## COG: L34494 COG0596 # Protein_GI_number: 15672802 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Lactococcus lactis # 21 257 24 261 267 124 33.0 2e-28 MEFILKTGETIYYEDQGEGIPILFLTGFGGNTEIWSGQVNFFLQHGYRVIRLDYLNHGRS DRVDYDLKIGDLADEVLQLVDALELKEPIGIGNSMGAAVLWNILSIRGWDFVSKAIFVDQ SPRMMNDDQWHYGFKNLNEANFEQLMSEPILRPAYRRIEGYVYKNSKAIDSKYPFSQPKN RSLVKGHARKDWRPVLRAATKPVLFILGEKSPFFNPQMGDALKQLNPRIQVEVMPNVGHI PMAEEPAQFNQLVLRFL >gi|269838500|gb|ACXB01000011.1| GENE 5 4408 - 6132 1852 574 aa, chain - ## HITS:1 COG:lin1002 KEGG:ns NR:ns ## COG: lin1002 COG1080 # Protein_GI_number: 16800071 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) # Organism: Listeria innocua # 1 569 1 568 572 748 67.0 0 MTGTLKGIAASDGIAIAKAYLMVDPDLSFEKKTITDVDAEINRLHDALEQSKKELTLIKA KAAENLGAEEAEVFEAHLTILSDPELIGNIEDKIKNDTINAEEATKEVTDNFIAMFEAMT DNAYMQERAADIRDVTKRLMSHLLGVELPNPALIDSEVIIVAHDLTPSDTAQLDRRYVKG FITDIGGRTSHSAIMSRTLEIPAVVGSEKATTSVKQGDMMIVDGLTGDALINPSDDEIKE YEQKSADFKAQKAEWEKLKNERTVSKDGVHFDLAANIGTPDDLQGVLDNGGEAVGLFRSE FLYMNASELPSEDQQFEAYKKVVEGMNGKQVVVRTMDIGGDKDLPYLPLPEEMNPFLGYR AIRISLDRTDLFRTQLRALLRASAYGKLAIMFPMIATVAEFKKARAIYDDERQKMIDAGT KVGEIQVGMMMEIPAAAMIADKLAKYVDFFSIGTNDLIQYSFAADRGNEKVSYLYQPYNP SLLRLIKQTIDASHAEGKWTGMCGEMAGDQIAVPILMGLGLDEFSMSATSILKTRSLMKK LSTDDMKKLAEKAITEAETNKDVIKLVEETVNNK >gi|269838500|gb|ACXB01000011.1| GENE 6 6132 - 6398 386 88 aa, chain - ## HITS:1 COG:L120335 KEGG:ns NR:ns ## COG: L120335 COG1925 # Protein_GI_number: 15672099 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, HPr-related proteins # Organism: Lactococcus lactis # 1 88 1 88 88 110 71.0 4e-25 MEKRDFHVIAETGIHARPATLLVQAASKFNSDIQLTYKDKSVNLKSIMGVMSLGVGQGAD VTISADGDDEADAIAALEDTMKKEGLSE >gi|269838500|gb|ACXB01000011.1| GENE 7 6541 - 6729 249 62 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0608 NR:ns ## KEGG: PEPE_0608 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 62 1 62 62 80 67.0 2e-14 MRDYLKLLNDLKDGVLDELTITAEEFQEFQPVFMDFPERKQLIGEAQRGGTITYRYENNK KQ >gi|269838500|gb|ACXB01000011.1| GENE 8 6945 - 9152 1637 735 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 93 707 143 785 815 635 50 0.0 MLCQNCHKNEATIHLYTNVNGRRTEVNLCQNCYQLLKNQQLNNNNGNGGARMAQDPFGFG NLDDIFRAMQGGNVSRPEDMYGQQVPPTQAGRGGGNNPNGGNGSSLLGQYGLNLTDLAKQ GKIDPVIGRDKEIERVIEILNRRTKNNPVLIGEAGVGKTAVVEGLAQRIVEGSVPQKLLN KQIIRLDVVSLVQGTGIRGQFEQRMQELMKEVQNNPDLIVFIDEIHEIVGAGNAEGGMDA GNVLKPALARGDFQLVGATTLKEFRDIEKDAALARRLQPVQVDEPSEEEAIKILKGIQKK YEDYHHVHYTDDAIVAAVKLSKRYIQDRYLPDKAIDLLDEAGSKKNLTINVADPETIQKK IDEAEAEKKKALESEDYEKAAYYRDQVSKLEKNKDGATNKEDEPTITAEDMEKIIESKTD IPVGDLQKQEQEQLQNLASNLKAHVIGQDEAVDKISRAIRRNRIGLNGTGRPIGSFLFVG PTGVGKTELAKQLADQLFGSKDAMIRFDMSEYMEPHSISKLIGSPPGYVGYEEAGQLTEQ VRRHPYSLILLDEVEKAHPDVMHMFLQILDDGRLTDSQGRTVSFKDTIIIMTSNAGSGDV EADVGFGAAMQGKTHSVLDKLGNYFKPEFLNRFDDIVEFHALTKDNLMQIVDLMIADVNK MLATQGLHVNVTKPVEERLVELGYDPKMGARPLRRVIQEQIEDRIADFYLDHPSEKQLIA RIKDDKIEVAPDDKK >gi|269838500|gb|ACXB01000011.1| GENE 9 9422 - 10399 872 325 aa, chain - ## HITS:1 COG:jhp0790 KEGG:ns NR:ns ## COG: jhp0790 COG0516 # Protein_GI_number: 15611857 # Func_class: F Nucleotide transport and metabolism # Function: IMP dehydrogenase/GMP reductase # Organism: Helicobacter pylori J99 # 1 325 1 325 325 523 76.0 1e-148 MKVFDYEDIQLIPAKCVVRSRSECDPTVELGKHTFKLPVVPANMQTIINEEIAEKLAADG YFYIMHRFEPETRLAFVKKMKAKGLISSISVGVKDGEYDFIDELAAKNLVPDYITIDVAH GHAQTVIDMIHYIKEKLPESFVIAGNVGTPEGVRELESAGADATKIGIGPGKVCITKLKT GFGTGGWQLSALRWCAKVARKPLIADGGIRNHGDIAKSIRFGATMVMIGSLFAGHIESPG ETKVEDGVTYKEYFGSASQYQKGEAKNVEGKKIWIHQRGHLADTLKAMQEDLQSAVSYAG GRDLESIRKVDYVIVKNSIFNGDIL >gi|269838500|gb|ACXB01000011.1| GENE 10 11018 - 11272 315 84 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0593 NR:ns ## KEGG: PEPE_0593 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 6 81 4 79 82 115 82.0 5e-25 MSKNLKIDLNTDELIGSREASLMWGKQKDYVRTIYNKYPERFPTGTIRKFGKQLIVTREG MESVTGIKYEDLDKKNIEKAKLPR >gi|269838500|gb|ACXB01000011.1| GENE 11 11555 - 11791 358 78 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0592 NR:ns ## KEGG: PEPE_0592 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 8 77 10 79 79 109 90.0 3e-23 MADKEKVDEKKPFDVGDEVTVKKTDLLPTGFAGTVGKVYENSILIEIDPASVANSRSEEL HDLHGRVVVRMSEATKKA >gi|269838500|gb|ACXB01000011.1| GENE 12 11803 - 12834 1150 343 aa, chain - ## HITS:1 COG:BS_lytR KEGG:ns NR:ns ## COG: BS_lytR COG1316 # Protein_GI_number: 16080618 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus subtilis # 1 309 1 304 306 185 36.0 1e-46 MRRERRRASHTVRNTILIVIAVILLGGIFYGVRKYQNVKNAVDSTYSSAGIKKQRNTADL VANEKPISILLMGTDTGALGRSYKGRTDSMMVVTINPKTNKTTITSIPRDLGVTIPGYEE KSPSKINAAYAFGKAGTAIRAVQSVFNIPIDYYVLVNMGGMQKVVDEVGGVDITPTLSFT YDGYTFKKGVKTHMDGKKALAYSRMRYDDPQNDYGRQTRQRAVLTAILGKSSSVSALLNK DFIDSIANETQTDFTFGNLVDLAKNYRAASKNIEETHAQGSGQMVNGQSMEIVSHTELQR VTDFIRKGLGLKHAETGTAALSANGAANVSNSQVESENINAGN >gi|269838500|gb|ACXB01000011.1| GENE 13 12928 - 14244 1051 438 aa, chain - ## HITS:1 COG:lin1833 KEGG:ns NR:ns ## COG: lin1833 COG0513 # Protein_GI_number: 16800900 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Listeria innocua # 4 419 9 425 442 243 36.0 6e-64 MNDLFQQHFQEKGFKQPTLIQERVAEPLRAGETVLGLSPTGSGKTLAFALPLLEKVIPGN GPQLLVLAPSQELAIQTTDVFREWASLINLKTTSITGGANVQRQIERLKKKKPEIIVGTP GRVLTLINERRLKVKEIQSLVIDEADEILTGEALEDVRQIEDQLPSDVQLSFFSATNDLA IDDLQTWFGVTPQVIDVRAEDQTRGAVQHGWLTASPKNKPQILRQLSRVKKFQGLVFFNH VATMEKITALLKHEGVKVGKIAGHQVQIDRAAAMRRFKKKELSLLMVTDVAARGLDIENL PAVINYDIPRDATTYTHRVGRTGRMGQAGFVISLGDDHDIRNLKKILRELDQPAEKLAIA NRQIMTATKARQVAEQVADEKQTSAPVAEEAPQKAPLRDVKTRKAATKVSPVASSKPKKK GKKKHLKRKGKPRAKKSN >gi|269838500|gb|ACXB01000011.1| GENE 14 14251 - 15258 1156 335 aa, chain - ## HITS:1 COG:lin1837 KEGG:ns NR:ns ## COG: lin1837 COG0673 # Protein_GI_number: 16800904 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Listeria innocua # 2 332 1 327 327 265 45.0 9e-71 MIKFGIIGTNWITQQYVDAAHASKEWKLTAVYSRTLEKAHEFGDKNGATMFYDQIADMVN DDEIDAVYIASPNSLHFAQAKQVLEAGKVAVVEKPIVANPTEWMALDKILKAHPQAKLFE AARHIHEPNFKAITQKIAEMDEIQGATLTYAKYSSRFDSYLSGNEPNIFSLKFAGGALQD LGVYLAYDAMVWFGMPDEVAYFNQKLRTGADGKGVAILRYPEYDVVLNIGKNVNSEIGSE IYGLKDTIIMDNAAELNRVEYLNASGDKELISTAPDENPMIAEATDFARVINDPDDPQNQ RDYQEWLTLSRNVNKLLYNLRQNGKIYFTNEKEED >gi|269838500|gb|ACXB01000011.1| GENE 15 15569 - 15949 544 126 aa, chain + ## HITS:1 COG:no KEGG:PEPE_0588 NR:ns ## KEGG: PEPE_0588 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 119 1 119 120 178 74.0 5e-44 MNWQKTALGDLFSLIRFDSKKTDKTEETVSPFFFAGTWLYHEPNTNREHELKILPNYDVY LDGKLLKTVVEDLDSYRITFIDRFGYHLVVKANEYRPISVYDEANNETYAIVDAEKEPEN RPEKED >gi|269838500|gb|ACXB01000011.1| GENE 16 15990 - 16757 811 255 aa, chain - ## HITS:1 COG:SMb21091 KEGG:ns NR:ns ## COG: SMb21091 COG3757 # Protein_GI_number: 16264418 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lyzozyme M1 (1,4-beta-N-acetylmuramidase) # Organism: Sinorhizobium meliloti # 53 255 123 330 336 69 27.0 6e-12 MKQDLRAAQRPRFAKAAIKRQRRLILSIVVALALLIAGGWGIFWHVQRQEQQTLSPYSIR GCVIDQADGIVNFQDLAKQKVKFVYLNATTGATYFDDSFNTNYDRLRATNLKVGVVHNFS FERSAVKQLQYISRKVKSNTGQLPVVIRVSYYGEDTAEKVDWKKQGPILADLVRRLANYY GQPVVIKTTPEIRQRLYPKYVKQSQFWLEAEKVQKADRHVEFVEYDDQRTLKTDRREIEL PVSYFNGGRQEWQKY >gi|269838500|gb|ACXB01000011.1| GENE 17 16876 - 18198 1209 440 aa, chain + ## HITS:1 COG:SA1270 KEGG:ns NR:ns ## COG: SA1270 COG0531 # Protein_GI_number: 15927018 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Staphylococcus aureus N315 # 4 432 2 431 440 421 58.0 1e-117 MNNSKPKQLQKNIGLFAAFSTVMGTVIGAGVFFKVASVTASTQSAGLSLLAWLAGGILTI CGGLTSAELAAAIPVTGGAIKYLEASYGKLTGFLMGWAQTLIYFPANIAALSIIFSTQLI NLLHLSNGLLVPIAMLCGASVTGVNLLGAKYGARLQSVALIAKLIPLIVIVIWGLGSSSP VHLSLLPANSHFSQTLTGFSGGLLATLFAYDGWLGIGAIAGEMKNPKRDLPLAIGLGLTG IMVVYLVINFIFLRTLPIHELAGNLNAASVAATHLLGNLGGKLVTIGILISVYGALNGYT MTGIRVPYAMALENSLPFSRALKRLSRTSVPYVAGLLQLVIALLMISVGSFDLLTDMLIF VMWIFNVLIFYAVIKLRRTQPELERPYRVPLYPLLPIVAILGGTFVLVMTIINQPVLAIT GIIITLLGIPVFLATNRANR >gi|269838500|gb|ACXB01000011.1| GENE 18 18232 - 18759 430 175 aa, chain + ## HITS:1 COG:no KEGG:PEPE_0583 NR:ns ## KEGG: PEPE_0583 # Name: not_defined # Def: glycopeptide antibiotics resistance protein # Organism: P.pentosaceus # Pathway: not_defined # 1 171 1 171 173 248 74.0 6e-65 MFIIKYIPFLGLALIILIGCLIAYERRPSLDRAIVFGSLAVYLVCVAWLLFTPGQYFFDP YAYYARYFYWHHAKIIYYPSALRSMGSYMNIVMTIPAGVYLGILFHRHLNWLTVILCAGL VGIFNESNQLILDMIINIQRTVDITDVLTNAAGVVIGYLAFYCLVRPWLKNTSFA >gi|269838500|gb|ACXB01000011.1| GENE 19 18951 - 20876 1812 641 aa, chain - ## HITS:1 COG:SP0729 KEGG:ns NR:ns ## COG: SP0729 COG2217 # Protein_GI_number: 15900626 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Streptococcus pneumoniae TIGR4 # 1 634 18 659 660 721 61.0 0 MKITTRFWISLIFSLPMLVEMILKPWGFMLPGGHWTMLALTTVVMALSARPFAQSAWASF KKHHSNMDTLVAIGTATAYFYSIYAMITGQAVFFESAAFVTTFVLLGQVFEEKMRNNASE AVEKLVNLQAKEAEVLRDGKYVKVPLSEVAVGDQIRVRPGEKIAVDGVIESGSSTIDESM VTGESMPVTKKVGDHVIGSTINNTGTFVFKASKVGNDTMLAQIVELVKKAQNSHAPIQNL TDRVSDIFVPVVLILAIATFLVWYVFLGATLAHALIFAVSVVVIACPCALGLATPTALMV GTGRGAKMGILIKNGEVLEKVNEVKTIIFDKTGTVTNGTPEVTDVIGDRDQVLRVAASLE QSSEHPLATAITKAAQKADIAPATVTNFTAVEGKGVKAQLNGKTALVGNEKLLDDLAIDE QWQDAMMDLQKAAKTVVVVALDNRVIGLIAIQDAPKPTSKAAIAELKAQGLQPVMLTGDN HVVAKAIARQVGIDTVIAEVLPRDKAERVKNFQKAGKVAFVGDGINDAPALSIADVGIAM GSGTDIAIESGGIVLVKNDLRDVAKALELSRKTFNRIKLNLFWAFIYNVLGIPVAAGVFY LAGIILSPELAGLAMAFSSLSVVTSSVLLNRAKIAPKSATA >gi|269838500|gb|ACXB01000011.1| GENE 20 20876 - 21148 404 90 aa, chain - ## HITS:1 COG:SP0728 KEGG:ns NR:ns ## COG: SP0728 COG4633 # Protein_GI_number: 15900625 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 2 90 35 123 123 75 40.0 3e-14 MKEQTQVVNVTVAGGYQPAEVHFQKGIPAQINFRRTSPQGCLDVVHSSQLGFEEQLPIDE TKSVTINTDHAGEFSFSCGMDMFSGKVVIE >gi|269838500|gb|ACXB01000011.1| GENE 21 21167 - 21538 385 123 aa, chain - ## HITS:1 COG:SP0728 KEGG:ns NR:ns ## COG: SP0728 COG4633 # Protein_GI_number: 15900625 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 1 123 1 123 123 125 49.0 1e-29 MTRLIVLIVGLALIGFIVWWFFGKHEAQSEVAEVTGDTQTVDVEVNGGYSPEKIVLKKGV PAVLNFTRKDPSSCLDRVVFADFGINQALPQNQTVPIKIDTSKAGEYPWACGMDMFHGKV EVK >gi|269838500|gb|ACXB01000011.1| GENE 22 21542 - 21997 359 151 aa, chain - ## HITS:1 COG:SPy1717 KEGG:ns NR:ns ## COG: SPy1717 COG3682 # Protein_GI_number: 15675568 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Streptococcus pyogenes M1 GAS # 7 137 3 133 144 90 34.0 1e-18 MENTATELSGAEWEIMRIVWTLGEAKSTEIVHLMQQSKKWTASTIKTLLRRLVAKGALRT ERLGRKFIYHPTIAEKQAMEATTTELFAHMCNMKKGQVITNLVAQTTLSKQDISNLQELL QQKASTAPAKVECNCLPETDCDETCTIKEGD >gi|269838500|gb|ACXB01000011.1| GENE 23 22150 - 23061 964 303 aa, chain + ## HITS:1 COG:no KEGG:LBA1082 NR:ns ## KEGG: LBA1082 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 136 303 63 226 226 92 38.0 2e-17 MPKYLKWGLIILFFPISLSYYAYRWSKDHLWAKSNYPRVFSGLTVWAIWLMLLVIAQSTS FANAVSLLGFAGLISFVIALIIDLFHKKSARPAIVPVILSAILFVGAVQFTPDTESSSSA AQVESTHVVHKVARSDQKDYQAAKAKHAALVAQLKKVKHENATLASEKAEATTAIATSKA KREEASSRSAAASEAAASRAESESKAAAASSKKAAQAQQKAAAAQSRAAAQQSRQAARQQ SAAQASDDEGDTYTGTAQDIIGNVNSHIYHVPGQAGYHMNSANAVHFHSEAEAQAAGYRK ALR >gi|269838500|gb|ACXB01000011.1| GENE 24 23061 - 23906 775 281 aa, chain + ## HITS:1 COG:no KEGG:LC705_01164 NR:ns ## KEGG: LC705_01164 # Name: laaO # Def: DNA-entry nuclease # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 3 278 1 281 283 292 58.0 1e-77 MKLKAKLLLVVVPFLMGSVVYHPTPTVQAKTVVKYTHPHRKATRKLQKENRELKQKIAKA QAKNDRLTKQLNHKKKQLHQSAATKQTDTANLAKLNYAGQQEVVVNHNQPKFSKADLSID KGAWQRYGNLDHLNRATAANAMLNQSLMPTAKREPLTVNPTGWHNKRIASGWLYNRSHLI GYQLTGQNNNLKNLMTGTRSLNSPEMLAHEMDIAYYLKQDPKHYVRYRVTPIFNGNDLLA RGVQMEAQSIGDNDIHFNVFIFNVQDGVKLNYADGTSSVEK >gi|269838500|gb|ACXB01000011.1| GENE 25 24248 - 24553 189 101 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|270290595|ref|ZP_06196819.1| ## NR: gi|270290595|ref|ZP_06196819.1| predicted protein [Pediococcus acidilactici 7_4] # 1 101 104 204 204 187 100.0 2e-46 MTLKKENYGMEVISVKPDENIGGFKVRIKEGEVIKEPYNNRYHSLKYTEHTLTKLSKKYS NYDTDIFKYSSIELDLVTPNHSDKLLLMIEKGKIVYNSKHR >gi|269838500|gb|ACXB01000011.1| GENE 26 24577 - 25146 266 189 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|270290596|ref|ZP_06196820.1| ## NR: gi|270290596|ref|ZP_06196820.1| predicted protein [Pediococcus acidilactici 7_4] # 1 189 1 189 189 293 100.0 5e-78 MLIDELIPGGNLALFTALVGVLVFLLKNKFYSLINPIIVNKNSVYIFLYVVLVFGLIVLI IIYTLSLIEVVRTIRIDLKVYNLDIIRHCWIYIFALIFISGIITFVWGLVLIITETKSIL TYEFREFPTANIELVKEKEKVFLIKELSSGDFLAVRNNTELKDRQFFFIEKKALETGTKI TYEKFKSLN >gi|269838500|gb|ACXB01000011.1| GENE 27 25272 - 26276 720 334 aa, chain - ## HITS:1 COG:FN0627 KEGG:ns NR:ns ## COG: FN0627 COG2222 # Protein_GI_number: 19703962 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted phosphosugar isomerases # Organism: Fusobacterium nucleatum # 1 334 2 336 336 118 27.0 2e-26 MYLNSEEFLSNFQKAINELDHVTQVAEDLKKHEVKQIFFTGCGGAFTKFVDLKPLMFKSL SVPFLIVSPEELSTSYLREIDAETLIIAGTKTGETKELISTLNKIKNIQTECRIISFIGD DGSTLEGQGLISDRIRSIDTDVNLIELGWLLQNLTSHNSLEELTNKKEQLVKAGAQIVEG IEALIPKSLGKVNNTNLDELQMWVGSGRLWGEVCCYANYLMEEIQRIKAQAVHSNEFFHG PFEIIDEHQSVNVVVNSDSNREHDLRVVDFVKNFAKDPLIIDMNSFKFEGLDEEMKSFVE SYALNHYFDTLYNMYSVKTGRTAATRRYYRLLNY >gi|269838500|gb|ACXB01000011.1| GENE 28 26304 - 27020 755 238 aa, chain - ## HITS:1 COG:lin2108 KEGG:ns NR:ns ## COG: lin2108 COG3716 # Protein_GI_number: 16801174 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Listeria innocua # 1 237 36 273 273 228 49.0 8e-60 MGFAYSMKGVINKLYHNQADRQAAIKRHLEFFNCTSATSPFIAGVLTSMEEKNSMDPNFD AQSINSMKTGLMGPLSGIGDSVFWGSLRIIASGIGISLAQKGSVLGPLLFILIYNIPNLL VRYYGTIWGYELGSSFVDKMAGGLMNAITYAINILGNTVIGAMVASMVVINIPLKISSGK NPETVQSILNSIMPDLMPLAATFLVAWLLKKKHVKMVWILLAILVISVLGAFLGFLKP >gi|269838500|gb|ACXB01000011.1| GENE 29 27030 - 27128 139 32 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MISNPGNKKITKKDLKGVFWRSMPMEASFNYE >gi|269838500|gb|ACXB01000011.1| GENE 30 27182 - 27904 199 240 aa, chain - ## HITS:1 COG:STM4537 KEGG:ns NR:ns ## COG: STM4537 COG3715 # Protein_GI_number: 16767781 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Salmonella typhimurium LT2 # 10 216 9 216 259 153 43.0 3e-37 MILQIIGIFIISLIANMQDFLGSSFIGRPVVTGFLVGLVFGDVTQGLIIGATLELAFMGL MGVGATVPPDEIIGGILATALALKNGYGVSVALTLVLPIATLGLLVKNLLYVVIFPAMAH RADKLASQGEVNKAADMHLWASITRVVMMTIVTTASFALGSGLVSDFVKLIPKALVDGIT ITTEILPAVGFAMLINMSFSKKSCSVFLSWVCMCCLSKTRYGCCLNHWCNCCWNHVLNYG >gi|269838500|gb|ACXB01000011.1| GENE 31 27925 - 28395 516 156 aa, chain - ## HITS:1 COG:STM4536 KEGG:ns NR:ns ## COG: STM4536 COG3444 # Protein_GI_number: 16767780 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Salmonella typhimurium LT2 # 1 147 1 147 153 157 53.0 6e-39 MIVMTRIDYRLLHGQVAFAWTNNLSANAILIANDSVAKDNFRKKTLQLAKPDSAKLIFKS IEDSAKAIASGVTDKYRVFIVVENIHDAYRLAKKVPQIKLIDLGLSDQKEGSKNIAKSVY VTPEESGLLTELESNGIQVLVKQAPGDPDIEFSTLI >gi|269838500|gb|ACXB01000011.1| GENE 32 28420 - 28848 346 142 aa, chain - ## HITS:1 COG:STM4535 KEGG:ns NR:ns ## COG: STM4535 COG2893 # Protein_GI_number: 16767779 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Salmonella typhimurium LT2 # 4 103 6 105 140 73 40.0 9e-14 MEVVLASHSYLAKGMYETVSLIMGEQTHLHYLTAYVEEGVDFKDQLVALTKSIKNEQIIF VSDVIGGSVNNELVNFVKSNCNYFLVSGMNLPFILELLTYTNELKNESVNQVIDNLKTTV DVGRAGLKVVELDDDPISEEDF >gi|269838500|gb|ACXB01000011.1| GENE 33 28964 - 29692 671 242 aa, chain - ## HITS:1 COG:SMc02340 KEGG:ns NR:ns ## COG: SMc02340 COG2188 # Protein_GI_number: 15966321 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Sinorhizobium meliloti # 5 242 11 242 244 68 25.0 8e-12 MKKYLYMEAKEKIMDLIANGTFSTESKIWDERTFATKLGYSRATIKNAIDALVTDNILEK RRGDGTYLLENDKERALEIGDDAPNSFTQIMRIGKKNAVSYVESFKMIYENQKLSAIFSY DYDKFYELVRTRQVDGNVIAVQKSYIPFDKFKDAHRYDFGQMSLYDYMDFKKNKPIDFKT KIEARPLRDNDLIASKIGLDLIEDGYVLYFEYKGYNEKGKLMEYTKSWYNPEFVSYKIEV ER >gi|269838500|gb|ACXB01000011.1| GENE 34 29694 - 30167 294 157 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|270290603|ref|ZP_06196827.1| ## NR: gi|270290603|ref|ZP_06196827.1| predicted protein [Pediococcus acidilactici 7_4] # 1 157 1 157 157 269 100.0 4e-71 MEIVNLKKYLTPLERPSQDVRIDVELGSQQTISGSGFYEAIFKRDVEKLHKRLFKIKKEG QLVSVVSSLIPDDVMTSEQLRIATDVEESVDLDNNVDRVTYDIMLTWPNDEEHSLFDNQQ ELQQILLKKVTIKNKERVIRYEEEAMLPDRFSLQKGK >gi|269838500|gb|ACXB01000011.1| GENE 35 30533 - 31486 384 317 aa, chain - ## HITS:1 COG:YPO2592 KEGG:ns NR:ns ## COG: YPO2592 COG3274 # Protein_GI_number: 16122805 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Yersinia pestis # 21 317 40 321 321 70 27.0 5e-12 MPFFYSNQTFKIGNFSIISEILYYAGTAAVPLFFMANGFFLINRSKMSYRYIYTKIGLIL VPVFGWNAILYLTKLLLGKNQENYLIIVGKSFLQRGFFFQFWFLGALIIMLLLIPIFNSI IKRSIKLFSVIMLLCLLISWGFDLYNHFSGQMPIQKSVIQTFRLWTWNSYYMAGGLIGFY YRRDGFSKIKKWIGYVLGITSVLMLIYSILNLRLVKTPFAEYNYDNVLIFFWINFIFLCC VFIPRFSTTQTKIIESISKYSFGIYIVHVIVLKIFEKFLGTSCIFINLVTIIGVFASSWI ITYVMAKIPYLNKLVVF >gi|269838500|gb|ACXB01000011.1| GENE 36 31596 - 33011 856 471 aa, chain - ## HITS:1 COG:SA0127 KEGG:ns NR:ns ## COG: SA0127 COG2244 # Protein_GI_number: 15925836 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Staphylococcus aureus N315 # 5 458 8 460 476 206 29.0 6e-53 MQVVKNYLYNAAYQVFILLVPLITTPYLARVLGPTGVGINAYTNSIIQYFILFGSIGVNL YGNRQIAYVRDDKDKLTKTFYEIFLMRVMTIILAYAAFLILLMFTGSYHTYYFAQSVSII AAAFDISWFFMGMENFGVTVLRNFIVKILTLVSIFTFVKSYSDLYIYILILSLSLLIGNL TLFPNLGRYIGKVDFKQLKIWRHLKPSLVLFVPQIATQIYLVVNKTMLGSMTSVQSAGYF DQSDKMIKMVLAVVTATGTVMLPHVANAFMKGEVEKTKEFLYNSFSFVTAMSVPMMFGVA AVAPKFVPLFFTDKFLAVVPLMMLESVVILLIAWSNALGTQYLLPTNQNGAYTKSVIIGA IVNIVINIPFILVWGALGATLSTVLSELAVTAYQLFVVREQIKYHSLFADTCKYLFAGLI MFIIVFLLDRKLSNSWTMLVVEVLVGIVIYVVLLIILRVKVIKDAKNMIKR >gi|269838500|gb|ACXB01000011.1| GENE 37 33014 - 34135 1278 373 aa, chain - ## HITS:1 COG:Cj1439c KEGG:ns NR:ns ## COG: Cj1439c COG0562 # Protein_GI_number: 15792757 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-galactopyranose mutase # Organism: Campylobacter jejuni # 1 373 1 366 368 426 58.0 1e-119 MQEYLIVGSGLFGSVFAHEAAKRGHKVKVIEKRDHVAGNIYTKEVEGIQVHQYGAHIFHT SMKKIWDYVNQFADFNNYINTVIANYNGEIYSMPFNMYTFNKLWGVITPDEAKAKIEEQK KSVKLDGKPKNLEEQAISLVGPDVYRKLVKGYTEKQWGQSATDLPSFIIRRLPVRFTYDN NYFNDPYQGIPIGGYTQIIEKMLDHELIEVETGVDFFDHKEEYLNSGAKIIFTGMIDQFF DYELGELEYRSLRFETEVMDVDDYQGNAVVNYTDAETPYTRVIEHKHFEFGKGNKGKTVV THEYPKTWKRGDEPYYPVNNKRNKELYTKYVELAKEKAPSVLFGGRLGQYRYYNMDQTIM AALQTVEHEFGEK >gi|269838500|gb|ACXB01000011.1| GENE 38 34163 - 35080 176 305 aa, chain - ## HITS:1 COG:MTH343 KEGG:ns NR:ns ## COG: MTH343 COG1216 # Protein_GI_number: 15678371 # Func_class: R General function prediction only # Function: Predicted glycosyltransferases # Organism: Methanothermobacter thermautotrophicus # 1 275 1 301 328 135 31.0 8e-32 MKFGNVIVTFNRKELLLEAINSLLRQSVYIDKIVIVDNHSTDGTYDFLEKSGVLVDKRID YYYLRENIGGSGGFEYGMRKAMQYDLDWITLSDDDAIYEENYFSYIEDEITRNKDISIFT GTVKLEDGRIQNTHRRIISNWNTLSYRMISESSYNKNFYVDLFTFVGATISTKLIRKIGY PEKDFFIWWDDLEYSLRARNYTKILNVSKAVVLHKTKIVSMDFSKKYKADWREYYGWRNR IVTLRKHSKNRLVINLFLIAWMVKRYARLVKPFYKHNRLHLVKLYTRAFYDAYTKHLGIN NHYKP >gi|269838500|gb|ACXB01000011.1| GENE 39 35105 - 36262 292 385 aa, chain - ## HITS:1 COG:L151480 KEGG:ns NR:ns ## COG: L151480 COG1887 # Protein_GI_number: 15672908 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC # Organism: Lactococcus lactis # 24 383 18 392 395 201 32.0 2e-51 MKKKFIFLIKHNDLLKAVFVSLGSFILKVMGLFVRTDNNLVLLVANNGNGMSGSPGAMFS YMKDKAQYAHLNFVWAVNDPEKYSGKKLNVIKFDSIGYFITALKAKYWITDINIERSLKF KKSNTKYLNTWHGVALKRIGNDDKNSGRYDYSNIDYLCVSGVHDKKVFSSALNARSSAFL ETGMPRNDSLFNVSQTEIKKIKSDLGLPEDKKLILYAPTWRDSTNNGKDFDLKIPIDFKK WEKLLKDEYIVLIRAHDRTTKLLNLQYNDFLRNFSHYEPLNNLLLVTDVLITDYSSILFD YSLLKKPFICYCYDYDEYKKSRGFYFDPEVVYPGGVLKEEAEVLDRLKNFKFNQTESDFK KINNLFMGYTKGNATEVCVKKLFDR >gi|269838500|gb|ACXB01000011.1| GENE 40 36293 - 37138 193 281 aa, chain - ## HITS:1 COG:no KEGG:LJ1031 NR:ns ## KEGG: LJ1031 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 1 252 137 390 411 87 30.0 5e-16 MLNVVKPSGVLNINWGADIVASNYYYLYYQWQHDAVVFGHSIFRNIGIFCEAPMFSLNLS TAFMLDYLITDRRTFKRFFVYLLTFLTTVSVTGIMLFLIVIVLDKFFEYVRDSFIKKRFR VGIVLFPLMAIIAFFIAYHLLVNKLSSASGSSRMQDYITGFKAWQLHPFLGNGFNDISAR ISFSSFWRLARSQTGYTNSIMTVLSEGGIYLFIAYLTTFLYVFKLAIKKRNYKLIIFVMM WIYLFLTTTFAHTMLMISFLAVVFSLIISKNQVKDHPFNYK >gi|269838500|gb|ACXB01000011.1| GENE 41 37600 - 38760 721 386 aa, chain - ## HITS:1 COG:lin1074 KEGG:ns NR:ns ## COG: lin1074 COG1887 # Protein_GI_number: 16800143 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC # Organism: Listeria innocua # 10 386 3 384 384 166 29.0 5e-41 MKTKEYLKILIKYIILFLMSFTRIIPVNKKRFFFSNYFGKSGFGDNLKYIAEELHERDSS FEIFWAVEKNYVGNFPDYVKVVKNGSLAWLLAVITSKYWIDNERKHLYVYKKPQQFYLQT WHGGVALKQIELDAVESYPEKASYIVERKHDNKIANAFISNSDFCTNMYRNAFNYQGDIW QIGYPRNDILIKNDNQEARRKVIEYFSLAKDSMTVLYAPTYRKDKNVDVYDLDFREISAA FESKYGKKCVFLVRLHPNLVSKAGLIKYNSKIINASEYDDIQELMVASDVLITDYSNVMF EFSYQKKPCFLYAPDFEEYLQDRELYFEYNTLPYPIAFDNQQLINNIENFNNDKYEHKVS ELLESINITEKGNASKVTVDKLLSVK >gi|269838500|gb|ACXB01000011.1| GENE 42 38750 - 39676 479 308 aa, chain - ## HITS:1 COG:MTH343 KEGG:ns NR:ns ## COG: MTH343 COG1216 # Protein_GI_number: 15678371 # Func_class: R General function prediction only # Function: Predicted glycosyltransferases # Organism: Methanothermobacter thermautotrophicus # 8 294 2 314 328 116 28.0 5e-26 MENRLEKKVLAIVVTYNRSFLLEECIQNLLNSVYKCDILIVDNASTDNTQECVKKYLIHE RVQYINTGSNLGGAGGFNFALKYAYQFDYDYFWLMDDDTMVDPEALSNLINVTYKTNDNF GFLSSFAKYTDGSACKMNIPTLSKKWYGDSFFIESCVKIEQATFVGFLLSKKILEKFGLP IKDFFIWADDSEFSSRIALQVPSYLVLNSTVTHKMKNNGDANFRVFMKEDSDRLDRYFYS FRNRFYIAKKRGYYQAIKFSCKLLVMAVLTLFMAKENRLKRERIIFKGFFEGLQFNPKVE FVGEKNED >gi|269838500|gb|ACXB01000011.1| GENE 43 39748 - 40164 276 138 aa, chain - ## HITS:1 COG:CAC3073 KEGG:ns NR:ns ## COG: CAC3073 COG2148 # Protein_GI_number: 15896324 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sugar transferases involved in lipopolysaccharide synthesis # Organism: Clostridium acetobutylicum # 1 137 85 221 222 143 50.0 1e-34 MIVDADKKLEDLLEKNEVDGAMFKMKHDPRITKVGRFTRKHSLDELPQLWNVLIGDMALV GPRPPLEREVAEYSEYDRQRLAVKPGCTGLWQVSGRNDVDFDGMVDLDLNYIEHSGILLD IFILLRTVGIVFKPNGAY >gi|269838500|gb|ACXB01000011.1| GENE 44 40415 - 41203 734 262 aa, chain - ## HITS:1 COG:BH3667 KEGG:ns NR:ns ## COG: BH3667 COG4464 # Protein_GI_number: 15616229 # Func_class: G Carbohydrate transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: Capsular polysaccharide biosynthesis protein # Organism: Bacillus halodurans # 3 240 1 238 255 208 42.0 7e-54 MGLIDLHCHILPGVDDGAKDLPMALDMAREAVKQGISHILLTPHHMDGMYTNHKKDVIAK TNAFQAELDKAGIPLTVFPGQEVHLTGELLDAIDQDDILFMDEAGKYLLLEFPHSGIPEY AEDMVFELIARGITPVLAHPERNHGFQKNPDRLYDFIEMGCLSQLTSSSYLGVFGNHVEE LTQRFIDANLGFIFASDAHNFKGRRFLMRDAFNKLTKKTTERKATSFNYNAKAIVNGDSI ATDDILHVSEVKKRKKKRFWLF >gi|269838500|gb|ACXB01000011.1| GENE 45 41206 - 41952 652 248 aa, chain - ## HITS:1 COG:BH3668 KEGG:ns NR:ns ## COG: BH3668 COG0489 # Protein_GI_number: 15616230 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Bacillus halodurans # 20 236 17 231 235 214 51.0 1e-55 MFFKKKRKLDNESLKNGIGLITYNDPTSTIAEQFRTVRTNIQFSSVDKQLKSIVFTSSAP SEGKSTVSNNVAVTWADQGKSVLIVDADMRRPTVHRTFRTSNAIGLSNLLAGTGSLDDAI HSTVVENLSVMPSGPIPPNPSELLGSPKMVNLLGVLTTKFDLVIIDAPPVNTVTDAQVLA ARADGTVLVVPQGIADKAGVRHAKQMLETVQANILGAILNRASAEKSTGYYGGYYGGYYG GYYGTDDK >gi|269838500|gb|ACXB01000011.1| GENE 46 41962 - 42744 467 260 aa, chain - ## HITS:1 COG:BS_ywqC KEGG:ns NR:ns ## COG: BS_ywqC COG3944 # Protein_GI_number: 16080679 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Capsular polysaccharide biosynthesis protein # Organism: Bacillus subtilis # 7 230 3 223 248 125 38.0 6e-29 METAETQQISIGQIVAILRKHIGLIFASTLVMTLLATLTTFFVMTPKYAATTQILVNRKL SDNMLGAQYQQNQADVQMISTYKDIIKSPTVLKDANSKLKGLPGYKSGVDNLKDSLSIDS QQNSQVFSITAKSTNPDTAAKEANTVATVFKKKVVRIMSIDNVSIVSKASADDDPVSPKV KINILAGLVLGFLIGVAFAFLRELSDRTVTSEEFLTEELGLKGLGIISEIDENEIRRKIS PKIGGNDHRVDGETRMRRRV >gi|269838500|gb|ACXB01000011.1| GENE 47 42760 - 43881 892 373 aa, chain - ## HITS:1 COG:lin0544 KEGG:ns NR:ns ## COG: lin0544 COG1680 # Protein_GI_number: 16799619 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Listeria innocua # 64 372 85 396 398 63 21.0 6e-10 MKKTLTWLGVTVGSLVVFAGAGFGLTLVNKDSLATHFIEKYTGSKSDSASSSGTTSSLSD LLKVSKSSNLDSILNNGEYNGSAALNTGKKILVSSRGYGNHANKITMARDSRFVMGKIQD VVNNAVIMHLIDTGKVKLNDKLSKYNKDVAGADLITVKEVMNQTSGLSAADFSATGSAKD LIKKVNADAAYDSASEGTYSESRVNTILQAAIIQKATGQSYRSVIQDLLDQLELEQTTFG LKNKTVDYYESGDSLNGTKVSLDDLDTKAINRLGKDQLVSSPSDMAQLFNYLFNSDYVAP ATLDKVFKDAKGGHAAGFAVDGDSLSLAQSIAGGCNRVEWNLKDQTGTFLFSNYVNGEDN LATISTNMFDYLR >gi|269838500|gb|ACXB01000011.1| GENE 48 44117 - 44521 392 134 aa, chain - ## HITS:1 COG:lin1076 KEGG:ns NR:ns ## COG: lin1076 COG0615 # Protein_GI_number: 16800145 # Func_class: M Cell wall/membrane/envelope biogenesis; I Lipid transport and metabolism # Function: Cytidylyltransferase # Organism: Listeria innocua # 1 126 1 126 127 181 72.0 2e-46 MKKVITYGTFDLLHKGHVRLLKRARELGDHLTVCVSTDEFNAVKGKKAYTPYEDRKHILE AIKYVDEVIPERGWSQKINDVKENDIDIFVMGDDWKGKFDFLKDYCKVIYLPRTEGISTT KIKRDLGLRDYKKE >gi|269838500|gb|ACXB01000011.1| GENE 49 44693 - 45406 696 237 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0563 NR:ns ## KEGG: PEPE_0563 # Name: not_defined # Def: Zn-dependent protease # Organism: P.pentosaceus # Pathway: not_defined # 16 231 16 231 233 274 61.0 2e-72 MRFRTFWGWLLIFGIAAWLIKSDVVTIPAGVQQTFRTGINKVATSLDSVIDSNWNFNQNK ATKADQTSGKATPVESVVKGKNLSKTYYYSFAPNTPENVQKVFQQAIKQYNQTGIVDLEP GPMHNWLNHVTLGVYQKAMPEKQDRTIELGVGGPDVIEQQGVVSRIANHASAKLNIYYDR SISQSVVLHELGHALGLDHSQSLTSIMYPIDRGQQGLSEEDLNGLRSIYGKQTDENE >gi|269838500|gb|ACXB01000011.1| GENE 50 45543 - 47297 1653 584 aa, chain - ## HITS:1 COG:lin2900 KEGG:ns NR:ns ## COG: lin2900 COG0514 # Protein_GI_number: 16801959 # Func_class: L Replication, recombination and repair # Function: Superfamily II DNA helicase # Organism: Listeria innocua # 4 584 6 588 590 659 57.0 0 MDPQTVLKSNFGYDTFRPGQARVIDAVLHRQNVLAIMPTGGGKSLCYQIPALMQSGLTLV VSPLISLMKDQVDTLVDNGIPATFINSTLDYMEINERFAAARNRQVKLLYISPERLDSDY FDQLASLPIDLLAIDEAHCISQWGHDFRPSYLNLTDLVQHLPTRPTIIALTATATPRVAS DIKERLGITEQVQTGFARENLAFKVVKNQDSDRFLMDYLKLNQDQSGIIYASTVKEVERL HRILTKKKFNVTMYHGQLSKAERRQNQEDFLFDRVPVMIATNAFGMGIDKSNVRFVIHDQ IPGSIEAYYQEAGRAGRDGLPSEAILLYKLRDVQIQHYYIESSERDEESKEVEYQKLQAM SQYGNTQMCLQRYILNYFHEDGPDCGYCGNCLDTREAQDITVETQQVLSCMHRMGERFGK EMVALVLTGSQNQRVKQFHFEKLSTYGLMKQKTKKQVTELIDYLVASGIIAMEGGQYPVL KNTAAGLDILRGKQRVTRKVAIRAEKSLPTNDALFEELRQLRRDLAEEQHVPPFVIFSDK TLRDMCAVLPETMDEMLDVKGIGENKLAKYGEQFLKVLQNYQEA >gi|269838500|gb|ACXB01000011.1| GENE 51 47625 - 47756 91 43 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MELIAGWAVDSKIGLTGEDWWLEFILAMPQRTHPTKKAEIRHA >gi|269838500|gb|ACXB01000011.1| GENE 52 47798 - 48475 653 225 aa, chain - ## HITS:1 COG:BH2679 KEGG:ns NR:ns ## COG: BH2679 COG0819 # Protein_GI_number: 15615242 # Func_class: K Transcription # Function: Putative transcription activator # Organism: Bacillus halodurans # 2 222 3 222 224 124 33.0 1e-28 MFSEEIKQAAQPILHDIQQHPFVQGIQAGKVPSAALAVYVEQDTCFLNAFAKVFAGALVK SQTKERMCFFSEQIQYSLADESAAHQILCDIAGIELTEHQHAEPRPLTALYTEHLFTAVR EGDLLDIAAVVLPCPWTYNEISQAIVENAAPDNPFLPWIEFYQGAEEEAGDDSVTQLFAM LDEAAPKLSAQRKEEITHRFLRSCELEYDFWEQAYSQKDWKYQWK >gi|269838500|gb|ACXB01000011.1| GENE 53 48457 - 49137 770 226 aa, chain - ## HITS:1 COG:L0201 KEGG:ns NR:ns ## COG: L0201 COG0352 # Protein_GI_number: 15673244 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine monophosphate synthase # Organism: Lactococcus lactis # 8 214 8 214 215 151 37.0 1e-36 MKFNPTMLQAYFIAGTQDVASKTDFLPTVERIVQAGATAFQFRNKGAVKTASRDEVVELA RACHQITQKYQIPLFIDDDVDLALTVGAEGIHVGQKDERITSVLERVGDQMIVGLSCNTA AQITAANQLNGVDYLGTGTVYETNSKADAGNALGVDKLRELVQMSKFPVVAIGGITLKRV AETVATGAAGIAAISMFIQMTDPAQQIAEIKATIAQVGGAACSPKK >gi|269838500|gb|ACXB01000011.1| GENE 54 49127 - 49948 859 273 aa, chain - ## HITS:1 COG:PM1261 KEGG:ns NR:ns ## COG: PM1261 COG0351 # Protein_GI_number: 15603126 # Func_class: H Coenzyme transport and metabolism # Function: Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase # Organism: Pasteurella multocida # 10 268 8 267 273 252 49.0 5e-67 MDTKKPAQVLTIAGTDSGGGAGIQADLKTMQERQVFGTCVVVAVTAQNTLGVTDVAVMPR HIIDHQFAALAEDLDIKAAKTGMMANSAVVDAVVENYQKYDFGPLVVDPVMIAKGGAKLL SDEAIEAVRTRLLPLAYLITPNLPEAEKLAGMPIKNNADAKVAAARLQELGAQNVLIKGG HFSDSAESRDYVLFADGSELELASPRYETSNTHGTGDTISSVIVSEIAKGKSLKQALQIG KAFINAAISDGIQVGHGHGPLNHWAYREVENEI >gi|269838500|gb|ACXB01000011.1| GENE 55 49954 - 50748 655 264 aa, chain - ## HITS:1 COG:lin0341 KEGG:ns NR:ns ## COG: lin0341 COG2145 # Protein_GI_number: 16799418 # Func_class: H Coenzyme transport and metabolism # Function: Hydroxyethylthiazole kinase, sugar kinase family # Organism: Listeria innocua # 2 264 3 264 269 178 39.0 1e-44 MDLQGIKRIREVNPVVVNYANFVTPFLVANGLNAVGASPIMSEEESEAEELVRLASAVTI NLGAVRREGWADIETLCQAANDQQKSLVLDPVAVGATQYRQQLNFRLLKKYHFDVIRGNL GEIAVLAGIDWQTRGIDAGNGDGDAHQVVKACAQKYHNVVIASGATDYISDGTRVVEIHN QTRLLPAVVGSGDLLSSLAAAFCAVEPNPLQAAINASLTLLCAGERVAEKLHDQYLPGSF LNGLMDELANITVAQVEERMKVEE >gi|269838500|gb|ACXB01000011.1| GENE 56 51143 - 51367 439 74 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|270290623|ref|ZP_06196847.1| ## NR: gi|270290623|ref|ZP_06196847.1| hypothetical protein HMPREF9024_00807 [Pediococcus acidilactici 7_4] # 1 74 1 74 74 67 100.0 4e-10 MDKDRMENTKDKVAGKVHEGAGKLTGDKKEESKGKAQNMAGKVKDKLADVKDSAAGAMEE LKDKLDKKDDKDHE >gi|269838500|gb|ACXB01000011.1| GENE 57 51693 - 52292 610 199 aa, chain - ## HITS:1 COG:lin2611_1 KEGG:ns NR:ns ## COG: lin2611_1 COG3397 # Protein_GI_number: 16801673 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 6 198 2 191 294 172 49.0 3e-43 MVKSSNRFIRYVLVVASIVVVVLGLGAIKASAHGFVTNPGGRAYLGSSQFPGKPLNENIG PVMYEPQSIEAPKNTFIDGKIASAGISKFSQLDEQTADRWYKTPIKSGPLDVTWHLTAPH STSTWDYYITKPGWDPNKPLKFSDFKKIASFDDHGATPGTEVTHKVNIPDQKGYHVILSV WNIANTANAFYQVSDVNIQ >gi|269838500|gb|ACXB01000011.1| GENE 58 52666 - 53451 714 261 aa, chain - ## HITS:1 COG:L111003 KEGG:ns NR:ns ## COG: L111003 COG3548 # Protein_GI_number: 15672091 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Lactococcus lactis # 1 181 125 303 331 100 26.0 3e-21 MKERMDAFSDAVIAIIITIMVLELPLPQHDALSEYLQFGKSIGIFFISFCFVANIWYQHA MLFKDSDTMNDRVFVKEFTFLAFLSLTPIFTKVIIYDTNRTTVMAYGVLTMIVSILFMWL SYEVIKQKYTSHHEMRQIFHKIYDNHNNFLGFASVLILVLAYFYPKWAVVIYLAIPVFSF VVTRHDYTDFQDVTELPEAEQDQFLSANNVDLHDLRKKQREIMKRYRGHGRKRNNPELQA ELRKLFQSYPDLAKRNRHQRE >gi|269838500|gb|ACXB01000011.1| GENE 59 53476 - 54288 667 270 aa, chain - ## HITS:1 COG:SP1273 KEGG:ns NR:ns ## COG: SP1273 COG3475 # Protein_GI_number: 15901133 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: LPS biosynthesis protein # Organism: Streptococcus pneumoniae TIGR4 # 4 258 6 258 267 132 32.0 5e-31 MSQIEELHRVQLQMLQVVTNICDKYDIKYMLIGGTLLGAIRHDGFIPWDDDVDLGMTREN YDKFATVAPVEFQHNHYFMQTADTDPNFAFSYMKILDTNTYIEEKNNVNDARKGIFIDIF PFDKVPRQPEIRQAVYNRFKIADTAILLRLGYNVIKTPFRKDPKDKSLDLFMSVAKLKER RENIMRLYNHEPFHHYKNYASQYAYDKEVLSQRELTELTKHKFENLEVAIPKHYDKILTR MYGDYMELPPEKNRVAKHIDVVIIDGKHVE >gi|269838500|gb|ACXB01000011.1| GENE 60 54412 - 54558 199 48 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKPTQNNLLGYLLKNLQNSELVERLLRNLQGQQLAYRPIPIENDKKRR >gi|269838500|gb|ACXB01000011.1| GENE 61 55552 - 56205 435 217 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|270290627|ref|ZP_06196851.1| ## NR: gi|270290627|ref|ZP_06196851.1| conserved hypothetical protein [Pediococcus acidilactici 7_4] # 1 217 1 217 217 455 100.0 1e-127 MKYKCLILDHDDTAVDSTRYIHYPSFVAALKELRPEAPVLTLNEFVNYCFNPGFNKLCTD IIKFTPEEQSRQQEIWRQYNRERIAKFFPGFPELIKQFKEQGGIITVVSHSESAMVKSDY MRACGFEPDAVYGWELGKDKIKPNPYPVLQILNHFRLQPKEALILDDSRLGLEMANKCNV PFAAAGWSPKNLTIQKWMRENSPLYFDHLNKLVRYIE >gi|269838500|gb|ACXB01000011.1| GENE 62 56341 - 56553 83 70 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MVTFELLNTFAINLLPAKQSYYLVNKYMNPESVQSCFASTTSTPTKITDTPQRRLIALNQ INRQLSLFRR >gi|269838500|gb|ACXB01000011.1| GENE 63 56600 - 57637 993 345 aa, chain - ## HITS:1 COG:L190278 KEGG:ns NR:ns ## COG: L190278 COG1063 # Protein_GI_number: 15673531 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Threonine dehydrogenase and related Zn-dependent dehydrogenases # Organism: Lactococcus lactis # 1 345 1 347 348 420 60.0 1e-117 MKATVFMEPGKVEVQEIEKPTLKKPTDAVIKVLRACVCGSDLWFFRGISEHDHGSAVGHE AIGIVEEVGSDVHNVSVGDFVIVPFTHGCGRCPACLAGFDGDCYNREPGNNAYQSEYVRY ANANWGLVKIPGQPADYSDEMLNNFLTLSDVMATGYHAAFTAEVKPGDTVVVMGDGAVGL CGVISAKLRGAKRIIAMSRHADRQRLALEFGATDIVEERGDEAVAKVMEITDNHGADAVL ECVGTEQSVDTATKVGRPGAIVGRVGIPQNPEMDTNALFRRNIGLRGGIAAVTTHDRNGL LQAVLDGKINPGKVFTQRFKLDDVQAAYEAMDQRKAIKSLLIVSE >gi|269838500|gb|ACXB01000011.1| GENE 64 57738 - 59288 848 516 aa, chain + ## HITS:1 COG:no KEGG:LCK_00908 NR:ns ## KEGG: LCK_00908 # Name: not_defined # Def: aspartate/tyrosine/aromatic aminotransferase # Organism: L.citreum # Pathway: not_defined # 17 506 19 493 541 120 26.0 2e-25 MPYCKGILLKEIMPLRNNSEILNLFIKAHGMTLKKLELDDLMLFLDFLYQYKFPALESYF FFDTIAQPPINDEFDMLHTDENYLLNIDFKDNRNLTKKRSVDLDTLYSKIIKKFARQFRL LKTISNNRSIINITLIFNDQSIEIYKYDPDNTNLVKINVKELFSVLSSIRTGNPNNEILK LDANDFVISPIKDTQKFINNNYWLTQIQNDIVEEITKNLGNPLAYGIQGTAGAGKTMIAF DIAKNLCRNNKVLYVFTGSKRDGHRSLEQYFTNLTIMDAKNFANCNLTDYDVIIVDEAQR SFRNVRVQIDNGLQLIKHRLLKRLIILFDTRQTISKYDMGQAIANLLTGRAIQKKLPETV RINEYIFEFIQQLFDKSYNTKKEINGNTISPFIDFSYFTSENSAIDWIESKKEEGYIFIQ SVPELNHSRMTPDTSITTEVIGEDIDKVVVLIDENYFYKYNSESKKNELKNKLEGTNHYN PVSNLYIAATRAKNKLAIAILNNKEVLEALANKIFN >gi|269838500|gb|ACXB01000011.1| GENE 65 59552 - 60013 286 153 aa, chain + ## HITS:1 COG:L50174 KEGG:ns NR:ns ## COG: L50174 COG0454 # Protein_GI_number: 15672030 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Lactococcus lactis # 2 150 1 149 149 132 44.0 4e-31 MMQIRPYTSDDLSSVYKLFVDTIHIINLKDYNTSQIKAWSNININELNKKMLSTNSKVIT ENNNILGFANIDDTGYIDMFYIHADYQGVGLGSLLLNSLENDVDVKLFSVHASITARPFF EQRGYQVKHQNRVHVRGRKFINYTMTKLAKHKT >gi|269838500|gb|ACXB01000011.1| GENE 66 60024 - 60959 1054 311 aa, chain - ## HITS:1 COG:lin0622 KEGG:ns NR:ns ## COG: lin0622 COG0604 # Protein_GI_number: 16799697 # Func_class: C Energy production and conversion; R General function prediction only # Function: NADPH:quinone reductase and related Zn-dependent oxidoreductases # Organism: Listeria innocua # 1 309 1 310 313 314 54.0 2e-85 MKAITIREYGDVNQLHEEELAIPQIADDEVLVKIKNTSINPIDWKARMGLLKQMYDWQFP VVLGWDLSGVITKVGKDVKDFKVGDEVFARPDIYKDGTKGTYAEYAAVKEDKLALKPANV SFEEAAAIPLAGLTAWQVIVDRLKVQKGDKVLIQAGAGGVGIFAIQIAKHLGAYVATTAS AKNAEFLKGLGADEVIDYHEHKIEDVLQDYDAVFDTIDALDEGLAILKPTGKLVTIAGHP TQQQQEAQPSATAWWLQPNGKQLAELGDLVAKGEVKVIIDSTFPLTEDGLRATHERSQTN HARGKIVINVG >gi|269838500|gb|ACXB01000011.1| GENE 67 60940 - 61050 58 36 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSIFYTTYFLQEVQCKTYLKNKLHSLRRNDDESNHD >gi|269838500|gb|ACXB01000011.1| GENE 68 61372 - 62514 1099 380 aa, chain + ## HITS:1 COG:SA1814 KEGG:ns NR:ns ## COG: SA1814 COG0624 # Protein_GI_number: 15927582 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Staphylococcus aureus N315 # 6 380 7 406 407 286 40.0 5e-77 MLSENQEYLKILADLIKIKSVNDHELEVAEYLKDLFQKNDIHSEILPIKGQRANLVAEIG SGAPVLAVSGHMDVVDPGNLAAWDSDPFTMTEKDGKLFGRGITDMKAGLAALVIAMIELK KQGLPKKGTIRLLATAGEEVGEEGSAAFYRDHYMEDADGLLIAEPSSTYGTTSEQKGSFD IKFTSKGTSVHSSTPEKGYNALVPLMQLLNEANEYFETIPAGEMGPVRFNIDVLNGGNQI NSIPDSATALINVRTIPEYDNDQVAKKIETLVKTYNDAGAQISTEIIMNEFPIATSPSNQ LVKTIQSIGKEYAGREIVVAASPGITDASNLAKDKPNDFPFAVYGPGDGSQHQVNESLPK KMYLDFIEIYQKLFMEFLEK >gi|269838500|gb|ACXB01000011.1| GENE 69 62598 - 62930 344 110 aa, chain - ## HITS:1 COG:BS_yvdC KEGG:ns NR:ns ## COG: BS_yvdC COG1694 # Protein_GI_number: 16080518 # Func_class: R General function prediction only # Function: Predicted pyrophosphatase # Organism: Bacillus subtilis # 1 106 1 106 106 87 37.0 8e-18 MRVNQHQEWLVNFYQKRNWYQLSPFVRLNFLTEEVGELSRAIRAIKIGRDHPGEPQPNAE QLRDNLTEELADVLDQLLIISSKFDIAPETLLKYSEDKLQARFKDALEEE >gi|269838500|gb|ACXB01000011.1| GENE 70 62994 - 63857 371 287 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|270290634|ref|ZP_06196858.1| ## NR: gi|270290634|ref|ZP_06196858.1| predicted protein [Pediococcus acidilactici 7_4] # 1 287 1 287 287 565 100.0 1e-159 MKKSKRIFLKLKASFDLLSFSLGICIAGVIPGYIMSLTLLKNVEWGSVAEWLGAFGSIGA IGIVIWQVQRNKKDIEESISLDKKEKIEMSRPRLYLGLREIFNENEVIYRTSGYKHVKNV DALTRIIIDSGKNKQVDFIAGNSYPLLNIFYIKNIIEKRISNCIIQIKYQCDYGKEYGEY KECFSIPVLRADEAIILVPYPASLNIECQLVEARIFFHTVANEKGCATFKMDEKNKISNT PVIVYEKKENNNTLDNVVDKIIFPDTSEFVTNWTQVSTHKKHLISKN >gi|269838500|gb|ACXB01000011.1| GENE 71 64247 - 64870 626 207 aa, chain + ## HITS:1 COG:BS_yvbG KEGG:ns NR:ns ## COG: BS_yvbG COG2095 # Protein_GI_number: 16080438 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Multiple antibiotic transporter # Organism: Bacillus subtilis # 11 205 10 206 211 114 40.0 2e-25 MHLVQAFLLSFTAFFAIMNPFANLPMFVSLTADNSRKEINAIARLAFIVATVIVVLFAFL GNYIFTIFGINLAALRIMGGIILGLIGYHMIQGNVSPIQHDPEKSVKDSVNSSNTNVAIS PLAMPILAGPGTIATTMNLASGTNPFIVVAAFVVLAVIAYFIFIYGEQIMDKLGNNIMNV ITKLMGLILATIGVKMLIVGVQAAFHL >gi|269838500|gb|ACXB01000011.1| GENE 72 64958 - 66139 778 393 aa, chain - ## HITS:1 COG:STM0257 KEGG:ns NR:ns ## COG: STM0257 COG2814 # Protein_GI_number: 16763640 # Func_class: G Carbohydrate transport and metabolism # Function: Arabinose efflux permease # Organism: Salmonella typhimurium LT2 # 6 383 3 382 391 117 25.0 3e-26 MKNKKLLIFTLAFGTFSILNTEVGILGILPLIGSRFGVSVATAGLFVSLFALVIAVFGSI MPVALKRFDRKKVMLLTLLLFTLANVIGGMVTSFNLALFFRLLPAILHPVYCSLAFTIAA ETADNGQASKAVSRVMVGVSAGTVLGTPLTTLIANNISYSAAMYFFALVNFVALVLNFVV LPSFKNGEDSVEESANANTTGVLKRGSLWVSGLGTILIGSTLFIVYGYVSDLLTQLSSFS STQLSISLFVFGLMSMVGNTIAGNLLSKAPRKLVSMYPFLLMAVYLLVAFFESHTLMMFP VIVLWGMIYGIGNNIQQYLISAALPDALDLANGLFISLGNVGTSLGTSLGGVLLSSVGLG MLPIGGISILILTFIVVLVRNRMLRRELNEVEY >gi|269838500|gb|ACXB01000011.1| GENE 73 66179 - 67219 1221 346 aa, chain - ## HITS:1 COG:SP1855 KEGG:ns NR:ns ## COG: SP1855 COG1063 # Protein_GI_number: 15901683 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Threonine dehydrogenase and related Zn-dependent dehydrogenases # Organism: Streptococcus pneumoniae TIGR4 # 1 344 1 344 345 390 55.0 1e-108 MKFADFEGAGKIEIKDVAKPKLQASDDVIIKVLRTCVCGSDMWAYKGLEEQGHENDGHEV LGIVEEAGKDITTVQPGDFVIAPFTHGCGHCRACLAGYEGTCANHPLQDNFSSGYQAEFV RYQHAEWSLVKVPGKPGDYSEGMLKSFLTLADVMATGYHAARVAHVQPGDTVVVLGDGAV GLCAIIAAKLRGAKKIVSTSRYTEKEALAREFGATDNVAERGAKGVEEILAITNGGADAV LECVGNAQSNKEAMQIVRPGAYIGRVGLPHGAELNPEEIFYKNVTVAGGPASVTTYDKEI LLKAVLDGQINPGKVFDKTYSLDEINAAYQAMADHQAIKSYVVVAD >gi|269838500|gb|ACXB01000011.1| GENE 74 67407 - 68270 654 287 aa, chain + ## HITS:1 COG:VC1588 KEGG:ns NR:ns ## COG: VC1588 COG0583 # Protein_GI_number: 15641596 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Vibrio cholerae # 1 134 1 143 293 62 27.0 8e-10 MVEFYLLEELVAFAQCGTLAKAAEQLGLTQPALTHSMKNLEEILGVQLFIRRPNRLSLTE TGKYAAREAQKLIVANQKFTDKVQFFEQNQAIITIGANAPGPLIVVRSLQESNVTIKDEH IMDNYSHVLLEEQVTCLIINEQLETDQITSIYLGTENMSINLSNDSPLLKITKLSFNDLK NRTILSPKEIGFWRKIYQENIANGKFIFQGESSEYSELLNYSSIPFFTTNLTKLDPHWGG NLPTNRVIKPLTDKAAHQPFYICFLKRNKNRLLPLIDKVQSQWAEVD >gi|269838500|gb|ACXB01000011.1| GENE 75 68465 - 69871 1122 468 aa, chain - ## HITS:1 COG:SP0871 KEGG:ns NR:ns ## COG: SP0871 COG0719 # Protein_GI_number: 15900754 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, permease component # Organism: Streptococcus pneumoniae TIGR4 # 3 468 7 470 470 617 62.0 1e-176 MDEVSPTQPGNFKDEWGPMDDVQPVFSTGVGINEETIQAISRAKHEPQWMLDLRLQAYQI YQSMPMPSFGPDLSEIDLNEIKYFQRATDHIARNWEDVPDEIKTTFERIGVPEAERKYLA GSAAQYESEAVYHNLKQDLESQGIIFMDTDSALKQHPELVRQYFGKLIAASDNKFAALNT AVWSGGTFLYVPKNVHADVPIQSYFRINAGRTGQFERTLIIVDEGGSVNYVEGCTAPNYA EDSLHAAVVEVFVKKDACCCYTTIQNWSTNVYSLETKRAQAEANSTMEWVDGNLGSKVTM KYPSIYLTGAGATGSMLSIAAAGANMHQDTGAKMIHLAPNTHSTIVSKAICHNGGRADYR GLIKYTKAAKRAKSHVECDTILMDQDSASDTFPVNDIETSDGTIEHEAHVSKISEAQLYY LKSRGLDEATASQLIIMGFLEPFTKQLPMEYAVELDRLIKFQMEGSIG >gi|269838500|gb|ACXB01000011.1| GENE 76 69864 - 70304 331 146 aa, chain - ## HITS:1 COG:lin2507 KEGG:ns NR:ns ## COG: lin2507 COG0822 # Protein_GI_number: 16801569 # Func_class: C Energy production and conversion # Function: NifU homolog involved in Fe-S cluster formation # Organism: Listeria innocua # 4 140 6 143 147 116 39.0 2e-26 MNNLQELYQKIILNHAKNPVGYGTVPHANCVGALRNPECGDEITVYAEVDAQRIQQLGFT GTGCVISMASASMMVAQLNGRTLADARQLWENFQNLVLQKDCDSDQLGDLAAFASLHQFP TRVRCGTLAWHALAEGLKEKGEVFDG >gi|269838500|gb|ACXB01000011.1| GENE 77 70301 - 71476 1076 391 aa, chain - ## HITS:1 COG:lin2508 KEGG:ns NR:ns ## COG: lin2508 COG0520 # Protein_GI_number: 16801570 # Func_class: E Amino acid transport and metabolism # Function: Selenocysteine lyase # Organism: Listeria innocua # 5 384 21 400 408 379 46.0 1e-105 MTDYQSLTYLDNAATTPMPEEVLAVIDDYYRFNKVNVHRGIYQLAGRVTSAYEAVREQIA QWLHAPQPESVVFTSGTTDALNQVAFGYAQPRLQPGDEIIVSVLEHHSNLVPWQRVAAQT GAHLRMVGMDSQGNLDYAQLAEFINARTKVVALTMVSNVLGTVVDVAKVAQLVHQYDGIL VVDAAQAVAHLPIDVTVMDADFLAFSGHKMFGPTGIGVLYGKLARLEEMEPVRFGGEMVD LVTPTSATFQPLPIRLEAGTPNVAGVLGLGAAVKYLEKQDFAAIQKHEARLMQFLLTELQ EVPGVKIYGSLDYQQRVGAVSFNVGKHHAHDVATILDASGVAVRAGHLCAEPLMQALNVS SVVRASFTFENQVADLQRLVDAVEQVGRILS >gi|269838500|gb|ACXB01000011.1| GENE 78 71478 - 72539 528 353 aa, chain - ## HITS:1 COG:SP0868 KEGG:ns NR:ns ## COG: SP0868 COG0719 # Protein_GI_number: 15900751 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, permease component # Organism: Streptococcus pneumoniae TIGR4 # 76 341 123 393 420 129 30.0 6e-30 MAIPLNKTATASYPRILGIRYDPAAFTLPDSTRAAWDWEANAEALQAINAAGGTVRRING ATAELSGLPQLLASTDNQFVQQHLQNQLQGVVISLPDHAEISPALNLTLRTESAFPVEWT VWFDLGVHSRLTTKLTLDLAGEVQQSNCLIGGALADESNLTLITDTQSHQATRSLLLGDF VSARDANLDWSLWPQTKGQLLGDLNVTLAGTGSRATLNLARYGYQDDWVGIRGQIKHLGQ HTFSRINMRGVLYENSRVNFTSIGQIDHGASDADADQESRLMTVEPHAKGSVNPVLVIDE NDVRAGHAASVGQYDEDALYYLQSRGLPMATAKQILIDNFMEPIWRLRNGEVG >gi|269838500|gb|ACXB01000011.1| GENE 79 72520 - 73296 186 258 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 4 230 2 224 245 76 30 6e-13 MSKLEIKNLKVNAGDERILNGVNLQINPGEIHALMGPNGTGKSTLSETIMGNPLYEIVDG QIWLDGQDITEMNVDERARAGVFLAMQYPMEVAGISNADFIHAALNARNQGQPVAVLPFL KQLRANMEFLEINPEYADRGLNADFSGGEKKRNEILQMMMLRPEMAILDEIDSGLDIDAL KIVAKGINAMRSTTFSCLMVTHYQRLLNYVVPDVVHIMMDGRIVKSGGPELATDLEKTGY AELEETLGSETSHGDSLE >gi|269838500|gb|ACXB01000011.1| GENE 80 73311 - 73898 293 195 aa, chain - ## HITS:1 COG:lin0306 KEGG:ns NR:ns ## COG: lin0306 COG0602 # Protein_GI_number: 16799383 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Organic radical activating enzymes # Organism: Listeria innocua # 12 191 3 182 183 268 67.0 3e-72 MVRQRRVRSPRNPQPQEWLAKDRSLEYIADYKPFNMVDGEGIRCSLYVSGCLFNCPGCYN KAAQNFHYGRPYSQELEDQIIEDMGQSYVQGLTLLGGEPFLNTQVCLRLVRRVRQEFGHD KDIWSWTGYTWDELMQESYDKLELLSELDILVDGRFLEAKKDLTLQFRGSSNQRIIDVPK SLAANQVVIWDKLLR >gi|269838500|gb|ACXB01000011.1| GENE 81 73909 - 76059 1591 716 aa, chain - ## HITS:1 COG:SP0202 KEGG:ns NR:ns ## COG: SP0202 COG1328 # Protein_GI_number: 15900138 # Func_class: F Nucleotide transport and metabolism # Function: Oxygen-sensitive ribonucleoside-triphosphate reductase # Organism: Streptococcus pneumoniae TIGR4 # 18 715 33 721 735 954 64.0 0 MINSQAIATDAWTELRQKQVVKANGERMQFYPYKIALVVDQLTTDEVERQKITQAILEQL TQMASPLTVEQIRAVFKVILHDYQRDDLWEKYAEYRQADEAKWQAAIDPQNKLSQLFDGR DTVVHENANKDSNIFSTRRDLTAGMVGKSFGLTMMPQTVAKAHLRGDIHFHDLDYSPLTS MTNCCLIDFKSMLANGFKIGNAEVESPKSIQTATAQMSQIIANVASSQYGGCSSDRTDEM LAPYAKLNYEKHLKEAEKWVLPEQRETFAKEKTKKDIYDAMQALEYEVNTLFSSNGQTPF TTVGFGLGTSWIEREIQKAILKVRIKGLGKQHRTAIFPKLVFSIKRGINLNPEDPNYDIK QLAVECATKRMYPDVLMYDKIVELTGNFKAPMGCRSFLQAWKNADGEEVNSGRMNLGVVT VNLPRIAIEAQGDREVFWEIMEDRVALAKKALLFRIKRCRDTQPQNAPILYKHGAFGTRL KDGDDVDQLFNHRRATISLGYIGLYEVGTAFFGPDWEDNQEAHDFTVSIVKYLYEQCLAW EKEYGYHFSVYSTPAESLTDTFCEDDVEKFGKIKDITDKEYYTNSFHYDVRKNPTPFEKL TFEEEYPKYAAGGFIHYCEYPNLKQNPAALEAVWTWAYDHVGYLGTNASIDHCYKCGFDG DFKPTARGFECPQCGNRDPKTCDVVKRTCGYLGNPMIRPMVHGRHKEISSRVKNME >gi|269838500|gb|ACXB01000011.1| GENE 82 76583 - 77323 855 246 aa, chain - ## HITS:1 COG:CC0246 KEGG:ns NR:ns ## COG: CC0246 COG1028 # Protein_GI_number: 16124501 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Caulobacter vibrioides # 3 245 7 260 261 182 44.0 7e-46 MSRLDGKVAIITGGVKGFGLACAKLFVREGAKVVITDVDVAGASEALQEIGEDKAVFVKQ DVAVEDNWEPVFRTAIDKFEKVDILVNNAGILAFDDAENIELDEWHKILSINLDGIMLGV KYGIRHMKEKGGSIINMASIAGLIGISNLYAYNASKGGVRLLTKSAALYCAEKHYPIRIN SVHPGYAHTPMVDAYPEMRADLEKLHPVGRLGTAEEIANMVLYLASDESSFSTGSEFVVD GGYTAQ >gi|269838500|gb|ACXB01000011.1| GENE 83 77772 - 78347 547 191 aa, chain + ## HITS:1 COG:SP0719 KEGG:ns NR:ns ## COG: SP0719 COG4721 # Protein_GI_number: 15900616 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 10 181 5 176 186 110 37.0 2e-24 MNTKKANWNYSLRDVVFIVLIAIFCGVIFFATNLSYSFLTAGLAAVGLGPLANDLLLGLW MIAGPLGIMLTRKIGSSIIAETLGGLVEMLLGGQFGAGAILSGLIQGIGNELGFTFTGYR HYDKLALFLSTVTSTIITFGWSLAQEGYAAYRPSFLIVLFIARFISIGFFCGVLVAWINR LVERSGIMRRK >gi|269838500|gb|ACXB01000011.1| GENE 84 78358 - 79785 1167 475 aa, chain + ## HITS:1 COG:BS_ykoD KEGG:ns NR:ns ## COG: BS_ykoD COG1122 # Protein_GI_number: 16078387 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, ATPase component # Organism: Bacillus subtilis # 2 444 6 481 490 223 31.0 8e-58 MEKVTINNLTFKYRQATQPILKQLNFHLTAGSFNVLYGPSGGGKSTLLRIIAGLYPHFAG TIIQGTVKLEEKDVTAWQPAELTQKLALLFQNPREQFAMDQVEKEFIFTLENLAIPADEI DDLITQALSQVGIAHLRHRQLATLSGGELQKVALAITLATGSDLILLDEPFANVDLKSRK ALIKLLKKLQAQEGKTILIADHDLNDYAKICDHLYQLDHQQVSLITDPQPIFARYQVTTR TAFPIPNANAAAILKLQDFGIENGGRYLLQAVQTSFPKQHLILLTGENGSGKSTLFEAIA RLHPYQGKLFYENRPLSQFNARTWAKTATVVFQDSEMQFLKMTVTEEIDLSLQHAREPQY WTADRIQDWLERLNLAGLQDQIVYQLSGGQKKKLQILTMLILGNPLVLLDEPLAGLDLAS VRVVMQLIQKAAQVQKQTIVMISHQLTGLPEFFDYHLALTDHQLIYQEELNGFIS >gi|269838500|gb|ACXB01000011.1| GENE 85 79769 - 80422 572 217 aa, chain + ## HITS:1 COG:no KEGG:LEUM_0766 NR:ns ## KEGG: LEUM_0766 # Name: not_defined # Def: ABC-type cobalt transport system, permease component CbiQ related transporter # Organism: L.mesenteroides # Pathway: ABC transporters [PATH:lme02010] # 1 216 1 213 213 177 47.0 2e-43 MDSSVKFILILAISFEIAFVKSVPINLVIIIGGLAYLLWKRIAVRKLGLLLVIPLLPAVA TWISFYLNGTGNAVRTAWIMATRVYAYIVLGGAFSFTATVESLLGSLEQNWHLPTKFVYG SLGAFYFIPRVKTAVQQIKTAAMMRGEVLHVWSPTIFFKAILLSLRWSDNLAIAMHSHGF SENQTRTHYQTYAIPRWNWGVAVGTFLALQVLVWYFR >gi|269838500|gb|ACXB01000011.1| GENE 86 80585 - 80887 408 100 aa, chain - ## HITS:1 COG:BH2813 KEGG:ns NR:ns ## COG: BH2813 COG0607 # Protein_GI_number: 15615376 # Func_class: P Inorganic ion transport and metabolism # Function: Rhodanese-related sulfurtransferase # Organism: Bacillus halodurans # 2 99 27 124 125 89 44.0 2e-18 MVKTIAMEDFYQKYPLTNAVLLDVREPDEFAAGHVVGARNFPLSQLSTRLSELDPATPYY VICRSGRRSANACGVLEVQGFDATNVAGGMLAWPGKVEKD >gi|269838500|gb|ACXB01000011.1| GENE 87 81020 - 82399 1107 459 aa, chain + ## HITS:1 COG:L48417 KEGG:ns NR:ns ## COG: L48417 COG4690 # Protein_GI_number: 15672234 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidase # Organism: Lactococcus lactis # 4 459 2 459 459 550 57.0 1e-156 MLKTCTTILVGKNASLTGSTLIARNEDGADDSNAQRFVVVTPEDQPQPYHSVHSDLTIPL PDNPLRYTATPDADPTYGIWGAGGINSKNTAMTATETITTNARVLSVDPLVEKGLGEEDF LTLVLPYIESAKAGVLRLGKLLEEYGTYESNGIAFADREEIWYMETIGGHHWAAIRIPDD AYAIAPNRWNITDFDFNSADCLASADLPEFIAKNQLNPDHEGLNLRHIFGSATIKDRYYN NPRAWYVHQFLDDNFVGEPTDQDLPFINRATKKISVEDLKFLLSSHYQETPYDPYGKTVP KKHFRPIGINRNLETHILELRNQVPDEIAGIHWLAFGPNTFNAMVPFYSNVTDTPTCYRD TPTVVNTNYMYWISRVLALIGDGNFALYQDLQDNFAQTVLQNMLRMQKETDRQATPTEKT LTSANQAMADFILAQATKLLNDAINLGSRNMKLRFSLGD >gi|269838500|gb|ACXB01000011.1| GENE 88 82499 - 83890 1459 463 aa, chain - ## HITS:1 COG:CAC3260 KEGG:ns NR:ns ## COG: CAC3260 COG0017 # Protein_GI_number: 15896505 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Aspartyl/asparaginyl-tRNA synthetases # Organism: Clostridium acetobutylicum # 1 463 1 463 463 616 63.0 1e-176 MENTLVKSLYAQATHDEDVSVEVTGWLKTLRSSKKISFLEINDGSCIKNVQVIMENGLEN YEEIKKAPIYTTLKVVGTVVDTPKAKQPFEIHATEIEVLGNSDSDYPLQKKHHTPEFLRE QAHLRPRTNTFYAVFRIRSLAAFAIHEFLQKNNFVYVNTPLITSSDTEGAGEMFKVTTLD LNNVPKNEEGKVDSTKDFFKQPTNLTVSGQLNAEAFALAFRDVYTFGPAFRAEDSHTTRH AAEFWMVEPEMAFANLQDVINVSEDMLKYVINYLLENASDEIDFLNQNVDQELRARLEAT RDADFAQITYTEAIDKLLAADQEFENKVEWGIDLQTEHERYLSEKVYQKPVFITDYPRDI KAFYMRENEDHKTVAAVDLLVPGIGELIGGSQREERLAKLNEKIKEFNLDPEEYKWYLEL RKYGETEHSGFGIGFERLLMYVTGVENIRDVIPFPRTPGNASF >gi|269838500|gb|ACXB01000011.1| GENE 89 84329 - 84562 216 77 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MISFVLLLAICLILATVYVTWLKNDRNLHLDWHSPLLIPKVFGFGVTFNPNDFFGLSMII IIILLILLPLIQSLHLF >gi|269838500|gb|ACXB01000011.1| GENE 90 84767 - 85555 241 262 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 9 249 4 238 242 97 30 2e-19 MLYKDLNGKVAVITGGSKGIGSAIAERFGQEGMHVVINYNSDKDGANAVRDQINAAGGEG VVVQADVSTEEGVNRLVDMAVDQFGDLDVWVNNAGMENQQPTAELSFESWKRVLDVNLNG VFLGSKAAINYFLSHDKPGNIINMSSVHEKIPWPTFAHYAASKGGVKLFNETIAMEYADR HIRVNAIGPGAINTPINAKKFADPEQLKTTTSMIPMQRIGDPEEVAAAAAWLASAESSYV TGITLFVDGGMTLYPSFQGGKG >gi|269838500|gb|ACXB01000011.1| GENE 91 85745 - 86269 572 174 aa, chain - ## HITS:1 COG:BS_yfiO KEGG:ns NR:ns ## COG: BS_yfiO COG1695 # Protein_GI_number: 16077901 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus subtilis # 5 170 2 173 182 97 35.0 8e-21 MPRPRVLPYIVLGLLNKNGVMSGKDMIAEFKNEISEFWTVSHSQLYPELQRMTDEGQIEV VDDEQNRKVINYAITPKGQTDLREWLATPITAKNDELTSLKMYFIADRHDPLLQQILKQA ADLHEQKVAHLKQRQKLLFEEPSAIEENYGHYLILSRAVEREASHLAWLKKHIE >gi|269838500|gb|ACXB01000011.1| GENE 92 86291 - 86827 768 178 aa, chain - ## HITS:1 COG:L193734 KEGG:ns NR:ns ## COG: L193734 COG3479 # Protein_GI_number: 15673912 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Phenolic acid decarboxylase # Organism: Lactococcus lactis # 3 176 2 175 177 286 79.0 2e-77 MEKQFKTLEDFLGTHFIYTYDNGWEYEWYAKNDHTVDYRIHGGMVAGRWVKDQEADIVML TEGVYKITWTEPTGTDVALDFMPNEGKLHGTIFFPKWVEEHPEITVTFQNEHIDLMEESR EKYETYPKLVVPEFAKISYMGDAGQNNEDVISEEPYDGITSDIRNGKYFDENYKRINK >gi|269838500|gb|ACXB01000011.1| GENE 93 87078 - 87485 503 135 aa, chain - ## HITS:1 COG:lin2105 KEGG:ns NR:ns ## COG: lin2105 COG2893 # Protein_GI_number: 16801171 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Listeria innocua # 1 134 1 136 138 107 38.0 7e-24 MTSVLICMHGKSATAMRDSAEMICGKQEKCAAVDFKMGQDLADFKAQLKKEIAELDGSPI CLTDLKGGTPFNTLVTLTKDFPDLKIITGTNIPMLLQLFVYRTQFDKADLVKELLSAGQK GIFQYTMVAQGDEEF >gi|269838500|gb|ACXB01000011.1| GENE 94 87502 - 88497 1131 331 aa, chain - ## HITS:1 COG:lin2106 KEGG:ns NR:ns ## COG: lin2106 COG2222 # Protein_GI_number: 16801172 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted phosphosugar isomerases # Organism: Listeria innocua # 1 331 1 331 331 515 70.0 1e-146 MRKFNKQQLVAGMQGALKLRSEINQLIDQIADQGYRNVCWLGIGGTYASSMQAVVHMKEK SEIETFYQNAAEYLTTGNRRITDQTLVITSSVTGNTKEVVDAVKQIKAAGATILGFIDRA EADLASLVTHCISYPENEQLKFFMVADRLMYLKGEFPEYEEFYSEMDQHFAEDIANIEEG ADKFAQEFAQQHHDDDIHYFVGAGNQWGATYSYAMCYWEEQHWIRTRAVEAAEFFHGMFE VVDRDTPVTVYVGEDSQRSLSERVAKFLPEICGNYTIIDTKDYDLPGFSEKFRGTLSPFV FHAINNRIDVNIEHINRHPMDIRRYYRALDY >gi|269838500|gb|ACXB01000011.1| GENE 95 88522 - 89598 798 358 aa, chain - ## HITS:1 COG:lin2107 KEGG:ns NR:ns ## COG: lin2107 COG0449 # Protein_GI_number: 16801173 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains # Organism: Listeria innocua # 1 358 1 354 354 330 48.0 2e-90 MKSINDYVHLEPKLYQQVLDNVEKLFLKPLNQWDLSKFKRVMIYATGSSSNAAFGALPLM SKILGMPIQVEEPSISENYLMNIENDTLCLAISQGGHSYSVVKLVERLQKNQKMVVALTS EKDSPLARVSNRVLEMGIPVEEMPYVSAGYSVTILDLILIALVLSKKFGKISAEEDEKYW QLIQEITKKLPQVIKQSDQWVEKHVDDFSNAQRITFIGYGAAYGVAREGETKFTEAVRNN AWGKELEEYMHGPYLGLHSEDIIVFIEPNGKLADRAQLLRKFLKQHVNHVYTIYANQVNL STLTTGDLAFEIATDELLAALFLTVPIHLMAYRLSQIKGVDLEHSAYPDFDQITASKI >gi|269838500|gb|ACXB01000011.1| GENE 96 89620 - 90441 922 273 aa, chain - ## HITS:1 COG:lin2108 KEGG:ns NR:ns ## COG: lin2108 COG3716 # Protein_GI_number: 16801174 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Listeria innocua # 1 272 1 272 273 422 78.0 1e-118 MKMKSSKLLTKKDLMATFWRSFTMEWAWNYERQSNLGYSYAMTPALKKIYQNREDKLKNS FKRHLEFFNVTPWLSTFPLGISIAMEEQNALNDDFDEDSINNIKIALMGPLSGIGDSFFW GTLRVIATGIGTSLAFQGNILGPLLFLLIFNIPAIIARYYGLFIGYNIGASFIDRVQKTG LMDKLTYGASVLGLGVVGAMVATMVTLKMPMKIGTGADATSVQKIFDGIVPGILPLLFTL FIFWLDKKGWKAQYILLLIAAIGIFGAWSGLLG >gi|269838500|gb|ACXB01000011.1| GENE 97 90422 - 91252 707 276 aa, chain - ## HITS:1 COG:lin2109 KEGG:ns NR:ns ## COG: lin2109 COG3715 # Protein_GI_number: 16801175 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Listeria innocua # 1 276 1 272 272 338 73.0 6e-93 MSAYLTALLLALIAMLGNGEYFLGSSMLSRPLVMCTLAGLIMGNVQQGIIMGATLELAFV GSFSIGASIPPEIISGSVLGTAFAIGAGKSTAVALTLGIPIASLVLVIKNLCFIFILPYF VHKADHYAEQGNSKGLDRMNLLGGFFSINLPIGLVVGVSYLLGSPVIKSFLAVIPQFIIN GLGIATGLLPAYGFALLLKMMVNKNNITFFILGFALAVYMKIPVTGVAIFGACLALILTG YSAFKDKFHAEPAAVSGNSTTNSGQNGGIDYEDEEF >gi|269838500|gb|ACXB01000011.1| GENE 98 91269 - 91742 418 157 aa, chain - ## HITS:1 COG:lin2110 KEGG:ns NR:ns ## COG: lin2110 COG3444 # Protein_GI_number: 16801176 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Listeria innocua # 1 154 1 154 155 203 70.0 9e-53 MIKLVRVDHRLLHGQVAVSWFNSLGANTILVANDAVASDDFRKSAIRLAKPDNAKLVMKS IEDSIKAINSGVTDKYKMLVVVESVADASKLIQETDGKIGELNLGGTKPREGTINYSKTI NLTNDEGAQLTQLQQSGVDVYIQQVPSEERQEFKKID >gi|269838500|gb|ACXB01000011.1| GENE 99 91760 - 92452 745 230 aa, chain - ## HITS:1 COG:lin2111 KEGG:ns NR:ns ## COG: lin2111 COG2188 # Protein_GI_number: 16801177 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 3 230 7 233 233 182 44.0 6e-46 MTLFKEIYADIKRKIENGVYKKGGVLPNEGELQKIYQVSRTTVRKAVEQLVEEKQVVRKK GVGLFVAPGISKQNILDMTGIIKTSTGLEPEKTQIKESYLRKAGVYYSKIFGIKENELIY YLSFLVFSEGERTYEKLILPLDYFPGFDPEILKVTAIIEAVNTGKMSVQDVYQDFQLTEA TDEDCKQLEVATDFPVFKITNTFLDDRARVVAIEYKLQSALDTKYSIDFD >gi|269838500|gb|ACXB01000011.1| GENE 100 92454 - 93179 565 241 aa, chain - ## HITS:1 COG:lin2112 KEGG:ns NR:ns ## COG: lin2112 COG2188 # Protein_GI_number: 16801178 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 1 240 1 242 243 157 39.0 2e-38 MEYKDISSSTVTEELLREMIMELKDGDQLPSQRELAEKLQVSRNAVKYALARLQKEGDIR VKNRQGIRVNKKIDVNLLGMRLLSSELGESNEQIQQLSAKVINTPNSLESFFESTTKRTL ELKRLRLYKNQPFSFEIAYLDAQRFEKLVDFDFNNYSLYKALKENYGVQPTYGYETITCV LADESLRRTLQVEEGKPLYQVDSFNYEENDIPVEHTVQYLIGSNFKYHFKAKNIFDYQED L >gi|269838500|gb|ACXB01000011.1| GENE 101 93494 - 94174 618 226 aa, chain - ## HITS:1 COG:SP1171 KEGG:ns NR:ns ## COG: SP1171 COG1011 # Protein_GI_number: 15901036 # Func_class: R General function prediction only # Function: Predicted hydrolase (HAD superfamily) # Organism: Streptococcus pneumoniae TIGR4 # 3 225 4 227 237 139 36.0 6e-33 MLKYAIFDLDDTLLDFKKGERIKATEVLRKYGVQDLTTGLATYTKINQQVWEAIEQGAPR DQVLKTRFSKTFAALGVDGDGVAAELEYRQRLATSYYQFEGAQALLRDLKSAGIRLMVGT NGVKKTQLSRLAGSKLDQYFIDCFISEDVGYAKPDERFFAPIKHKYADMSFQNTAMVGDR LQSDILGANQAGLKSIWYNPQQIAVDAPIKPTAVAHSYDQLRELML >gi|269838500|gb|ACXB01000011.1| GENE 102 94337 - 94876 408 179 aa, chain + ## HITS:1 COG:no KEGG:PEPE_0481 NR:ns ## KEGG: PEPE_0481 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 178 1 178 178 170 51.0 2e-41 MAKAKKFKRPRIFSKSNLTVVVLAILGFQTYPNFTNQQLDIHSNTDSYGEENASNETTLI ENQIADSFNGRLPFQVNFTDSQIIIRVPKLNLFDFTQLYALNMVHILKKIQGDTLPRSLK KIRLSVGDQTQVFSISAIKEANFSTEKIKEFSQEQWGQISKQTYQDYYQNYVLPKITRK Prediction of potential genes in microbial genomes Time: Fri May 27 06:39:57 2011 Seq name: gi|269838499|gb|ACXB01000012.1| Pediococcus acidilactici 7_4 cont1.12, whole genome shotgun sequence Length of sequence - 113829 bp Number of predicted genes - 102, with homology - 101 Number of transcription units - 46, operones - 26 average op.length - 3.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 100 - 1776 1364 ## COG4716 Myosin-crossreactive antigen - Prom 1881 - 1940 7.9 - Term 1913 - 1958 9.1 2 2 Op 1 . - CDS 2011 - 2331 430 ## PEPE_0479 hypothetical protein - Prom 2486 - 2545 4.5 - Term 2504 - 2548 1.0 3 2 Op 2 5/0.000 - CDS 2579 - 4396 2233 ## COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains - Prom 4455 - 4514 10.5 - Term 4580 - 4626 7.4 4 3 Op 1 6/0.000 - CDS 4653 - 6014 1462 ## COG1109 Phosphomannomutase - Prom 6068 - 6127 3.8 5 3 Op 2 7/0.000 - CDS 6140 - 7039 643 ## COG4856 Uncharacterized protein conserved in bacteria 6 3 Op 3 . - CDS 7040 - 7891 731 ## COG1624 Uncharacterized conserved protein - Prom 7916 - 7975 4.0 7 4 Op 1 . - CDS 8059 - 8958 774 ## COG0812 UDP-N-acetylmuramate dehydrogenase 8 4 Op 2 . - CDS 9023 - 9940 603 ## COG0673 Predicted dehydrogenases and related proteins - Prom 9984 - 10043 5.8 + Prom 9929 - 9988 6.5 9 5 Tu 1 . + CDS 10014 - 10550 401 ## COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases + Term 10578 - 10615 6.2 10 6 Op 1 3/0.143 - CDS 10543 - 11049 174 ## PROTEIN SUPPORTED gi|228000081|ref|ZP_04047083.1| acetyltransferase, ribosomal protein N-acetylase 11 6 Op 2 . - CDS 11039 - 11512 453 ## COG0802 Predicted ATPase or kinase 12 6 Op 3 . - CDS 11513 - 12205 507 ## COG0692 Uracil DNA glycosylase - Prom 12232 - 12291 5.3 + Prom 12231 - 12290 7.3 13 7 Op 1 . + CDS 12316 - 13188 816 ## COG0561 Predicted hydrolases of the HAD superfamily 14 7 Op 2 . + CDS 13208 - 13696 374 ## PEPE_0467 hypothetical protein 15 7 Op 3 . + CDS 13765 - 14325 712 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Term 14364 - 14422 7.1 - Term 14352 - 14408 7.3 16 8 Op 1 10/0.000 - CDS 14445 - 14912 624 ## COG0691 tmRNA-binding protein 17 8 Op 2 6/0.000 - CDS 14928 - 17279 1490 ## PROTEIN SUPPORTED gi|15894003|ref|NP_347352.1| fused ribonuclease/ribosomal protein S1 - Prom 17363 - 17422 3.0 - Term 17362 - 17398 -0.8 18 8 Op 3 2/0.143 - CDS 17424 - 17660 226 ## COG1314 Preprotein translocase subunit SecG - Prom 17692 - 17751 8.1 - Term 17726 - 17773 10.3 19 9 Op 1 . - CDS 17790 - 19112 1562 ## COG0148 Enolase 20 9 Op 2 13/0.000 - CDS 19181 - 19936 809 ## COG0149 Triosephosphate isomerase - Prom 19956 - 20015 2.9 21 9 Op 3 26/0.000 - CDS 20021 - 21223 1282 ## COG0126 3-phosphoglycerate kinase - Prom 21249 - 21308 4.6 - Term 21261 - 21302 11.1 22 10 Op 1 5/0.000 - CDS 21352 - 22374 829 ## COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase 23 10 Op 2 2/0.143 - CDS 22442 - 23458 666 ## COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain - Prom 23588 - 23647 8.7 - Term 23531 - 23579 1.5 24 10 Op 3 . - CDS 23659 - 24984 873 ## COG1508 DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog - Prom 25076 - 25135 74.5 + TRNA 25059 - 25130 49.5 # Arg CCG 0 0 + Prom 25418 - 25477 5.2 25 11 Tu 1 . + CDS 25528 - 26121 668 ## COG0740 Protease subunit of ATP-dependent Clp proteases + Term 26145 - 26199 13.8 - Term 26139 - 26182 10.2 26 12 Op 1 . - CDS 26198 - 26473 276 ## PEPE_0454 hypothetical protein - Term 26493 - 26538 7.1 27 12 Op 2 . - CDS 26575 - 29382 2936 ## COG1705 Muramidase (flagellum-specific) - Prom 29486 - 29545 6.9 - Term 29515 - 29575 0.4 28 13 Op 1 12/0.000 - CDS 29651 - 30580 762 ## COG1481 Uncharacterized protein conserved in bacteria 29 13 Op 2 12/0.000 - CDS 30592 - 31593 946 ## COG0391 Uncharacterized conserved protein 30 13 Op 3 . - CDS 31590 - 32477 695 ## COG1660 Predicted P-loop-containing kinase - Prom 32505 - 32564 4.9 - Term 32599 - 32646 6.3 31 14 Op 1 7/0.000 - CDS 32663 - 35506 2289 ## COG0178 Excinuclease ATPase subunit 32 14 Op 2 . - CDS 35519 - 37522 1971 ## COG0556 Helicase subunit of the DNA excision repair complex - Prom 37583 - 37642 3.6 33 15 Tu 1 . - CDS 37654 - 38283 712 ## COG1896 Predicted hydrolases of HD superfamily - Prom 38312 - 38371 6.5 - Term 38610 - 38657 12.0 34 16 Tu 1 . - CDS 38700 - 40424 2161 ## COG1109 Phosphomannomutase - Prom 40522 - 40581 10.3 - Term 40582 - 40632 17.0 35 17 Tu 1 . - CDS 40670 - 41593 602 ## PROTEIN SUPPORTED gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 - Prom 41616 - 41675 3.3 - Term 41717 - 41765 7.1 36 18 Op 1 3/0.143 - CDS 41784 - 42659 1008 ## COG1210 UDP-glucose pyrophosphorylase 37 18 Op 2 . - CDS 42682 - 43698 1209 ## COG0240 Glycerol-3-phosphate dehydrogenase - Term 43732 - 43773 -0.6 38 18 Op 3 10/0.000 - CDS 43775 - 44620 757 ## COG0682 Prolipoprotein diacylglyceryltransferase 39 18 Op 4 2/0.143 - CDS 44633 - 45571 926 ## COG1493 Serine kinase of the HPr protein, regulates carbohydrate metabolism 40 18 Op 5 . - CDS 45587 - 45946 351 ## COG1950 Predicted membrane protein 41 18 Op 6 . - CDS 45965 - 46279 320 ## PEPE_0439 putative stress-responsive transcriptional regulator - Prom 46306 - 46365 8.3 - Term 46423 - 46474 5.1 42 19 Op 1 32/0.000 - CDS 46478 - 47140 675 ## COG0704 Phosphate uptake regulator 43 19 Op 2 7/0.000 - CDS 47153 - 47911 324 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 44 19 Op 3 41/0.000 - CDS 47924 - 48721 281 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 45 19 Op 4 38/0.000 - CDS 48735 - 49622 837 ## COG0581 ABC-type phosphate transport system, permease component 46 19 Op 5 39/0.000 - CDS 49619 - 50533 721 ## COG0573 ABC-type phosphate transport system, permease component 47 19 Op 6 9/0.000 - CDS 50526 - 51407 904 ## COG0226 ABC-type phosphate transport system, periplasmic component - Prom 51486 - 51545 5.7 - Term 51580 - 51613 4.5 48 20 Op 1 40/0.000 - CDS 51635 - 53023 1226 ## COG0642 Signal transduction histidine kinase 49 20 Op 2 . - CDS 52995 - 53699 619 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 50 20 Op 3 6/0.000 - CDS 53711 - 54709 841 ## COG1186 Protein chain release factor B - Prom 54819 - 54878 2.5 51 20 Op 4 7/0.000 - CDS 54905 - 57268 2593 ## COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase) - Prom 57355 - 57414 6.0 - Term 57351 - 57392 6.6 52 21 Op 1 6/0.000 - CDS 57417 - 57971 872 ## PROTEIN SUPPORTED gi|116492230|ref|YP_803965.1| SSU ribosomal protein S30P / sigma 54 modulation protein - Prom 58011 - 58070 2.2 53 21 Op 2 6/0.000 - CDS 58100 - 58774 380 ## COG1040 Predicted amidophosphoribosyltransferases 54 21 Op 3 . - CDS 58771 - 60090 555 ## COG4098 Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) - Prom 60118 - 60177 5.0 + Prom 59942 - 60001 6.9 55 22 Tu 1 . + CDS 60122 - 60760 616 ## COG1739 Uncharacterized conserved protein + Term 60851 - 60890 2.4 - Term 60583 - 60628 2.7 56 23 Tu 1 . - CDS 60828 - 62003 1140 ## COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase - Prom 62099 - 62158 5.3 - Term 62176 - 62217 11.3 57 24 Tu 1 . - CDS 62225 - 64057 1725 ## COG0531 Amino acid transporters - Prom 64145 - 64204 7.2 - Term 64232 - 64270 8.6 58 25 Op 1 41/0.000 - CDS 64357 - 65979 1622 ## PROTEIN SUPPORTED gi|167855908|ref|ZP_02478658.1| 50S ribosomal protein L28 59 25 Op 2 . - CDS 66002 - 66286 301 ## COG0234 Co-chaperonin GroES (HSP10) - Prom 66360 - 66419 6.0 + Prom 66260 - 66319 5.6 60 26 Tu 1 . + CDS 66476 - 67123 571 ## COG1266 Predicted metal-dependent membrane protease + Term 67133 - 67180 8.4 61 27 Op 1 . - CDS 68539 - 69210 597 ## LSL_0100 CRISPR-associated Csn2 family protein 62 27 Op 2 4/0.000 - CDS 69207 - 69512 232 ## COG3512 Uncharacterized protein conserved in bacteria 63 27 Op 3 . - CDS 69490 - 70395 758 ## COG1518 Uncharacterized protein predicted to be involved in DNA repair - Prom 70470 - 70529 4.0 - Term 70554 - 70596 5.9 64 28 Op 1 . - CDS 70613 - 70858 162 ## LSL_0096 hypothetical protein - Prom 70945 - 71004 2.4 65 28 Op 2 . - CDS 71018 - 74707 3416 ## COG3513 Uncharacterized protein conserved in bacteria - Prom 74876 - 74935 6.5 + Prom 74642 - 74701 6.7 66 29 Tu 1 . + CDS 74891 - 75466 524 ## PEPE_0418 hypothetical protein + Term 75542 - 75595 17.1 - Term 75594 - 75648 7.6 67 30 Op 1 1/0.286 - CDS 75691 - 78225 2438 ## COG0308 Aminopeptidase N 68 30 Op 2 . - CDS 78252 - 79661 1470 ## COG0477 Permeases of the major facilitator superfamily - Prom 79778 - 79837 6.2 - Term 79782 - 79824 5.4 69 31 Tu 1 . - CDS 79854 - 80498 735 ## COG0702 Predicted nucleoside-diphosphate-sugar epimerases - Prom 80698 - 80757 10.5 + Prom 80804 - 80863 7.9 70 32 Op 1 . + CDS 80972 - 81721 610 ## gi|270290734|ref|ZP_06196958.1| predicted protein 71 32 Op 2 . + CDS 81786 - 82223 492 ## gi|270290735|ref|ZP_06196959.1| predicted protein + Term 82268 - 82326 11.5 - Term 82263 - 82304 6.2 72 33 Op 1 . - CDS 82333 - 82737 402 ## gi|270290736|ref|ZP_06196960.1| predicted protein 73 33 Op 2 . - CDS 82756 - 83778 721 ## LAR_1493 hypothetical protein 74 33 Op 3 . - CDS 83793 - 84377 528 ## gi|270290738|ref|ZP_06196962.1| predicted protein 75 33 Op 4 . - CDS 84414 - 87077 2980 ## GALLO_0271 putative transposon related peptidoglycan linked protein (LPXTG motif) - Prom 87220 - 87279 9.4 + Prom 87094 - 87153 5.5 76 34 Tu 1 . + CDS 87325 - 87630 352 ## COG1396 Predicted transcriptional regulators + Term 87674 - 87710 1.7 - Term 87768 - 87809 5.4 77 35 Op 1 . - CDS 87837 - 89390 1486 ## COG0519 GMP synthase, PP-ATPase domain/subunit - Term 89428 - 89462 -0.3 78 35 Op 2 . - CDS 89463 - 91379 1499 ## COG2217 Cation transport ATPase 79 35 Op 3 . - CDS 91372 - 91917 531 ## COG0783 DNA-binding ferritin-like protein (oxidative damage protectant) 80 35 Op 4 . - CDS 91917 - 92147 337 ## COG2608 Copper chaperone - Prom 92171 - 92230 4.9 + Prom 92103 - 92162 6.6 81 36 Tu 1 . + CDS 92270 - 92947 666 ## COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases + Term 93023 - 93070 1.7 - Term 93004 - 93067 14.0 82 37 Tu 1 . - CDS 93098 - 94483 1232 ## COG1823 Predicted Na+/dicarboxylate symporter - Prom 94667 - 94726 5.5 - Term 95041 - 95087 9.6 83 38 Op 1 . - CDS 95210 - 96127 889 ## COG1072 Panthothenate kinase 84 38 Op 2 3/0.143 - CDS 96163 - 96867 810 ## COG3527 Alpha-acetolactate decarboxylase 85 38 Op 3 . - CDS 96896 - 98572 1432 ## COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] - Prom 98607 - 98666 4.0 86 39 Tu 1 . - CDS 98710 - 101007 2105 ## COG3973 Superfamily I DNA and RNA helicases - Prom 101033 - 101092 9.6 + Prom 101047 - 101106 6.4 87 40 Op 1 . + CDS 101147 - 101794 636 ## COG0406 Fructose-2,6-bisphosphatase 88 40 Op 2 . + CDS 101840 - 103471 1361 ## COG0531 Amino acid transporters 89 40 Op 3 . + CDS 103476 - 104156 427 ## COG0406 Fructose-2,6-bisphosphatase + Term 104168 - 104217 10.1 + Prom 104311 - 104370 8.5 90 41 Tu 1 . + CDS 104402 - 105694 544 ## PROTEIN SUPPORTED gi|149914878|ref|ZP_01903407.1| 30S ribosomal protein S2 + Term 105721 - 105775 14.3 - Term 105603 - 105652 4.7 91 42 Op 1 17/0.000 - CDS 105785 - 106438 761 ## COG0765 ABC-type amino acid transport system, permease component 92 42 Op 2 31/0.000 - CDS 106438 - 107088 547 ## COG0765 ABC-type amino acid transport system, permease component 93 42 Op 3 16/0.000 - CDS 107085 - 107918 811 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 94 42 Op 4 . - CDS 107931 - 108671 507 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 - Prom 108739 - 108798 5.2 - Term 108752 - 108794 6.1 95 43 Op 1 . - CDS 108814 - 109629 818 ## PEPE_0388 hypothetical protein 96 43 Op 2 . - CDS 109676 - 110188 564 ## gi|270290760|ref|ZP_06196984.1| predicted protein 97 43 Op 3 . - CDS 110190 - 110300 58 ## 98 43 Op 4 . - CDS 110315 - 110761 407 ## COG0735 Fe2+/Zn2+ uptake regulation proteins 99 43 Op 5 . - CDS 110822 - 111391 440 ## COG0194 Guanylate kinase + Prom 111382 - 111441 7.9 100 44 Tu 1 . + CDS 111512 - 111688 310 ## PEPE_0384 hypothetical protein + Term 111717 - 111772 13.3 - Term 111712 - 111753 10.7 101 45 Tu 1 . - CDS 111790 - 112206 500 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes - Prom 112232 - 112291 7.9 + Prom 112188 - 112247 7.3 102 46 Tu 1 . + CDS 112360 - 113748 1436 ## COG0531 Amino acid transporters Predicted protein(s) >gi|269838499|gb|ACXB01000012.1| GENE 1 100 - 1776 1364 558 aa, chain - ## HITS:1 COG:lin0483 KEGG:ns NR:ns ## COG: lin0483 COG4716 # Protein_GI_number: 16799558 # Func_class: S Function unknown # Function: Myosin-crossreactive antigen # Organism: Listeria innocua # 2 558 49 566 566 498 48.0 1e-140 MRKAFMIGTGVANLAAGVYLIRDGGWSGNQITMFGLDKHGANDGAAVVDYETEYGNQRLS NDRGFLAKGGRMLNEETYENLWDVLRSVPSLDHPGQSVTDDILNFDHAHPTHDVARLMDK RNGIRNNGGADDYSHMQFNNQDRKLLTKLMMMPESQEAKLNDVSIAEWFKDSPHIFTTNF WYMWETTFAFKKESSAMELRRYMNRMILEFSRINTLEGVTRTPYNQYESIILPMRKYLSD HGVTFINNRKITAFQFKDTPLRDDIIVTGLEYEDVGENKQTGTIPVDENDLVFDINGAIT DSSSIGDFNTPIKENMEYAPSAALWKQATEHFYNLGNPDKFFNDRAQSEWMSFTVTTKNH YLVNQISRITQQEPGNALNTWVDSNNLLSIVVHHQPHFHAQKENETVFWGYFMFPRKNGD YVDKPVIEMTGKEMLQELLGHLAEVDQATDSIVYHEEEIMDSIVNVIPVYMPYASALFNT RAVGDRPEVVPKHSKNLAFVSQFAEMPFDMVFTEQYSFRAAQRAVYHFLGIPEEKTTPVH HYEKNPKVLLKATRTMFR >gi|269838499|gb|ACXB01000012.1| GENE 2 2011 - 2331 430 106 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0479 NR:ns ## KEGG: PEPE_0479 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 103 1 103 103 177 95.0 7e-44 MKSNETFTLIQEITRLDGTKYIEIGNMMMNGRAELAAERGYIKSVRIMQLNISHSQHVIN YEKYIGERYEMPDENMTSWEEWQKDDRIMKDFNAILHENHISANKE >gi|269838499|gb|ACXB01000012.1| GENE 3 2579 - 4396 2233 605 aa, chain - ## HITS:1 COG:SP0266 KEGG:ns NR:ns ## COG: SP0266 COG0449 # Protein_GI_number: 15900200 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains # Organism: Streptococcus pneumoniae TIGR4 # 1 605 1 602 602 644 55.0 0 MCGIVGVTGRADTTKLLVNGLKKLEYRGYDSAGIYVNNGQGKDYLVKAQGKIQNLEAQLS DDVNGSAGIGHTRWATHGIPSVANAHPHFSADNRFYLVHNGVIQNFKELKQTYLADVPFQ SDTDTEVVVQLVDHFAKEGLSTMDAFKKTLSLLKDSSYAFVLMDREMPDTLFVAKNKSPL LIGVGDDFNVVCSDALAMINVTKRFVELHDGDVVKITPDKVELFDADGQAIQREPFEVDI DQSDADKGTYPYYMLKEIDEQPAVIRRIEEKYLDSKGAVRFDKAMLDKLNQAGKIYIVGA GTSYHAGLVGKKLLERFAKVPTEVVLASEFAYDDPIIEKDAFFIFLSQSGETADSRQVLV RVNDEWQKPSLTITNVANSTLAREAEFSATLEAGPEIAVASTKAYTAQIAVEALLAVAMG RMKQINAATDFDIAGQLSMVANAIQTVVDEKAAIEQLAKDTLLKARNTFYIGRGLDYAVA LEASLKLKEISYIQAEGFAAGELKHGTIALIEEGTPVIGIITQGKTADHTRSNLEEVISR GAQVITFASQSLAKNTDDVILPDVDEMLMPLVSVIAAQLLAYYACLQRGYNVDQPRNLAK SVTVE >gi|269838499|gb|ACXB01000012.1| GENE 4 4653 - 6014 1462 453 aa, chain - ## HITS:1 COG:BS_ybbT KEGG:ns NR:ns ## COG: BS_ybbT COG1109 # Protein_GI_number: 16077245 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Bacillus subtilis # 4 453 3 448 448 582 66.0 1e-166 MKLKYFGTDGVRGIANETLTPELAFQLGRTGGYVLTKHAKDADQRPRVLVSRDTRVSGQL LKHALISGLLSVGIEVMDMGIVTTPGVAYLVRKQEADAGVMITASHNPVEDNGIKFFGSD GYKLSDELEAEIEVLLDAEKDNLPRPSAKGLGSVTDYPEGGLNYTAFLEQTIPDDLEGLH IAVDAANGATSGYVSQIFADLNTEFETMATNPDGLNINAGVGSTHPEALAKFVVEKGADM GVAFDGDGDRCIAVDEKGNIVDGDKIMYICGKFLSERGRLKEDTVVTTVMSNLGMYKALE KHGMHSVKTQVGDRYVVEEMLKDGYNLGGEQSGHIIFLDHNTTGDGMLTAIQLMYVVKQT GKKLSELAAEVTTYPQKLVNVRVQDKKLALENQAIKDIIKKVEDEMAGEGRVLVRPSGTE DLLRVMAEAPTEEAVNQYVDRIVAVVKSEVGVD >gi|269838499|gb|ACXB01000012.1| GENE 5 6140 - 7039 643 299 aa, chain - ## HITS:1 COG:SPy1037 KEGG:ns NR:ns ## COG: SPy1037 COG4856 # Protein_GI_number: 15675034 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 1 236 1 233 318 82 27.0 1e-15 MKKFFTKNFSYRLIALVLALLLFAYVKTDHLTSTRVSGTDANQNKTALMSTKTATITMPV DLDVDSSKYVVSGYQERVKITLTGSSAMITTLTNTRNFKVYLALQDYAPGKHTVKYQVEG LGKDIRYRIQPEKSKITIAHRKTKKFEIRYRYDTNMVKKGYTMGNVKTSVTTVQATGSAS EIDRISQVVADVNVPSDTAEDVSARSVLQALDSNGNIVNVVLTPQSINVTIPVSKVKTEK AKESSEASSQATSSSSSSEKSASSAPSSSSEESSSSSASSDESSSVDDTSSDGNPQLQQ >gi|269838499|gb|ACXB01000012.1| GENE 6 7040 - 7891 731 283 aa, chain - ## HITS:1 COG:BS_ybbP KEGG:ns NR:ns ## COG: BS_ybbP COG1624 # Protein_GI_number: 16077243 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 16 245 14 244 273 309 64.0 4e-84 MNINWSQLLTWSDVINIIDVLVVWFVIYELIMLLRGTKAVQLFRGIIVIIIIMAGSWYIG LSTVYWIMNQVINWGVIAMVIIFQPEIRRGLEHLGRGSIFAKNHSQKEAEEKMIQALDKA IQYMAKRRIGALISIQMETGLDDYIETGIPLDADVSGELLINIFIPNTPLHDGAVIIKNG KIAVAAAYLPLSQSNLIPKELGTRHRAAVGMSEVTDALTIVVSEETGEVSIMKDGELLRD MSQESYLRYFRTQLITSDEGPTPFFTSVTENISAFFKGKRGRH >gi|269838499|gb|ACXB01000012.1| GENE 7 8059 - 8958 774 299 aa, chain - ## HITS:1 COG:L173881 KEGG:ns NR:ns ## COG: L173881 COG0812 # Protein_GI_number: 15673144 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate dehydrogenase # Organism: Lactococcus lactis # 10 298 11 299 299 339 58.0 4e-93 MDQSITAAFPEIKVYKDEPLSKYTNTQTGGPADLLVFPKSVTETKQLMIWAKETATPLTV IGNASNLIVRDGGIRGLVLILTKMDNIQVNGNTVIAEAGAALIQATEVAYQSGLTGFEFA AGIPGSVGGAIFMNAGAYGGEISEIVESAEVLTPDGQIKRLNNHELDFGYRHSSVQDYHD VVISASFKLRPGDQTKIRARMDELNRLRASKQPLEYPSCGSVFKRPTGYFTGKLIHEAGL QGFTIGGAQVSKKHAGFIINIGNATATDYLDVIHHVQATVFKQFGVKLETEVRIIGEEK >gi|269838499|gb|ACXB01000012.1| GENE 8 9023 - 9940 603 305 aa, chain - ## HITS:1 COG:lin1972 KEGG:ns NR:ns ## COG: lin1972 COG0673 # Protein_GI_number: 16801038 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Listeria innocua # 1 302 1 300 301 197 36.0 2e-50 MIKVGVIGLGNIAQKAYLPVDSQLQDRFEWYLVSRQAEKLQYLQKKYGFQHGTTRMDDLF EENVQAVFIHTATSTHYAIIKKFLQHGVHVYVDKPISENLAEVKELYQIAAEQHVLLTCG FNRRFAPLHHALGQLGTPHLVRATKSRVMENQSPQFAVYDLMIHVIDLVQFLMGSSKVEY VDGRLREQDGQLVWAEVELTNGDASGVAQIDLRAGANTEVAEVVSDHGVARVENLQTLTH DHDGKRTIQSTPDWQKMLVTRGFAPLIEAFLRAVENDGPNPVAPASVIKSHTLCDRLIQS MKVIK >gi|269838499|gb|ACXB01000012.1| GENE 9 10014 - 10550 401 178 aa, chain + ## HITS:1 COG:CAC0738 KEGG:ns NR:ns ## COG: CAC0738 COG0847 # Protein_GI_number: 15894025 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases # Organism: Clostridium acetobutylicum # 1 171 1 170 306 130 40.0 9e-31 MNFVAIDFETAAPARASACSIALTVVQNDQITDELYSLINPETKFHWRNVQVHGIHEADV QDAPTFPELWPILQPFFTPDQLVVAHNANFDNSVLKKTLERYELNRLPYQTLDTLRTSRS FFPNYPNHKLNTLCDNLGIELEHHHNALDDSLACANILLYEKKQFGADAISSFIRKVS >gi|269838499|gb|ACXB01000012.1| GENE 10 10543 - 11049 174 168 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|228000081|ref|ZP_04047083.1| acetyltransferase, ribosomal protein N-acetylase [Brachyspira murdochii DSM 12563] # 10 145 4 140 166 71 32 2e-11 MANREDEVYLTEGTPEDAQAIVRLIDQLETETDSIEFDPTIHQLELKLVQQNLALIQQSP TNFLLLAKLGDAPIGLLTIVETDAKKGQAELGVGVLEKYWHNGIGTLLVDEALYWAKNYS SLSTIWLDVLTDNEPDIHLYEKMGFTTKKAPIKDDQGRSLKRMARKLS >gi|269838499|gb|ACXB01000012.1| GENE 11 11039 - 11512 453 157 aa, chain - ## HITS:1 COG:lin2184 KEGG:ns NR:ns ## COG: lin2184 COG0802 # Protein_GI_number: 16801249 # Func_class: R General function prediction only # Function: Predicted ATPase or kinase # Organism: Listeria innocua # 6 146 7 146 153 148 52.0 4e-36 MQTYQLRNEEMTIEFGKMIGKLLHPNDVVVLDGDLGVGKTTLTKGIAQALGIKRYVKSPT YTIIHEYHDGRMPLYHIDAYRLEDGNADDIGLEEYFESDGVTVIEWAQFIKEYLPEEYLK IGLDRNHDNTQRFLTIEPNGERYQQFEKFLEDQINGQ >gi|269838499|gb|ACXB01000012.1| GENE 12 11513 - 12205 507 230 aa, chain - ## HITS:1 COG:BH3850 KEGG:ns NR:ns ## COG: BH3850 COG0692 # Protein_GI_number: 15616412 # Func_class: L Replication, recombination and repair # Function: Uracil DNA glycosylase # Organism: Bacillus halodurans # 3 223 2 222 224 291 62.0 6e-79 MKTIIHNDWQKVLESEFEKDYYANLHQFLKQEYATQNIHPDMYHIFQAFEWTPFSEVKVV ILGQDPYHGPHQAHGLSFSVRPGVPVPPSLQNIYKELQDDLGVKPVQHGYLKKWADQGVL LLNSVLTVRNGQAFSHQGHGWERLTDTAIKRLSGREKPVIFILWGRAARDKIKLIDQSRN IIIQSAHPSPLSAYRGFFGSKPFSKTNAALEAMGEKPIDWQLPEHVEEEK >gi|269838499|gb|ACXB01000012.1| GENE 13 12316 - 13188 816 290 aa, chain + ## HITS:1 COG:lin0668 KEGG:ns NR:ns ## COG: lin0668 COG0561 # Protein_GI_number: 16799743 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Listeria innocua # 1 288 1 287 288 201 37.0 2e-51 MISVIASDMDGTLLNEEMQISPGNAAAIKKAQDAGVHFVVATGREYREAKPLLETYGLSV PLITLNGAAIFDTEGKILDEVPITKPNAQLIMHQLEKRGLYYEITTNQGVVSNSRTRRIE TVSHLLETVNPDTPFKLAVAMSSARVELMNIRYVDNYQVLLDDPKIQILKLVAFGQNGQK GLQPVREAIQQQVDVAISSSFENNIEINSPRAQKGLAVQNFADQLGIPMSQVMTIGDNLN DASMLRVAGVSYAMGNAIPEIKRLANHLTVTNNEDGVGKAILEQLAENQQ >gi|269838499|gb|ACXB01000012.1| GENE 14 13208 - 13696 374 162 aa, chain + ## HITS:1 COG:no KEGG:PEPE_0467 NR:ns ## KEGG: PEPE_0467 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 158 1 158 200 269 79.0 2e-71 MQRFYLKSQGLENKGATTVSDENHNSKYLLVGKWGIKRDALSVYDMQGQLRAELKQIAVG LLPKFKLFLNNHEVGTVTTPVGFIRGLLYVHNLRWIIIGDTVTCHFKVFHGLTKILEVNR VQINGSAYIELNVFVESNTPLFICLAAILDRWIQKRPPTSGA >gi|269838499|gb|ACXB01000012.1| GENE 15 13765 - 14325 712 186 aa, chain + ## HITS:1 COG:lin0816 KEGG:ns NR:ns ## COG: lin0816 COG0454 # Protein_GI_number: 16799890 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Listeria innocua # 3 184 2 185 185 108 36.0 8e-24 MQITKATTEDMPQVVELLKIILDEMELPFYLKNDPQEVTKLFVATFQSPLYQEAADVVVA KMDNQVAGVAFGYPGANEEKLKDEFQNHFAQVALAPQPIYEEAEADDDEWYLDSLVVNPD FQNHGIGTKLLNALPEYAKARDLKMVGLLVDDLNPDAERLYRRIGFQLDHRQIVSGHHYQ HLKKEV >gi|269838499|gb|ACXB01000012.1| GENE 16 14445 - 14912 624 155 aa, chain - ## HITS:1 COG:SPy0504 KEGG:ns NR:ns ## COG: SPy0504 COG0691 # Protein_GI_number: 15674609 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: tmRNA-binding protein # Organism: Streptococcus pyogenes M1 GAS # 12 154 9 151 155 169 66.0 2e-42 MAKKPQVKDQALAQNKKARHDYSILSTMEAGIALTGTEIKSVRERRITLRDGFVQIRHGE AILMNVQISEYLQGNQFNHDPLRNRKLLLHKKEIQKLQEASQNKGITIVPLKVYLKHGFA KVLIGVAKGKHEYDKRETLKKRDQQREIERALKNR >gi|269838499|gb|ACXB01000012.1| GENE 17 14928 - 17279 1490 783 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15894003|ref|NP_347352.1| fused ribonuclease/ribosomal protein S1 [Clostridium acetobutylicum ATCC 824] # 6 731 3 715 730 578 42 1e-164 MESSKLQASIINYLERRPTQKFTAEELFKGLSLEKASVFNELVKELTSLERSHKVEITAD DKFKIARPQNQLLVHGTFRANDRGFGFVAVEDDEIPDIYISEEHTAYALNLDEVDVKIVR PSKKGDDRGPEGIVKKITKRHLTQAVGVFEFAPDPAHNVLGHINLKDKKMSNYEFDVLEG GIHPEDGAVITAQVTQYPKPNAPKLIAGVAEKTIGYRDDPGVDILEIVYQHELPTEFPDD VKEEIAQIPDHVTEAEKQGRVDLTNEVVVTIDGDDSKDFDDAVGLQKLDNGNYRLLVNIA DVSHYVKEGSPLDKEAYRRSTSVYLTDRVIPMLPRKLSNGICSLNPNVERLAMTCEMEIS PDGEVLSHKIYPSVIESNARMTYNDVNKILEARDKKTIERYQDLVPMFEMMGKLHKLLLK RRKQRGAIEFDDNEAQIIVDENGHPIDIKVRERGTSERMIESFMLAANETVAEHYYDAHV PFLYRVHETPDSERMLTFFEFLSTFGHVVKGSTKDLKPKMLQSVLKKVAGTREEAMISVM LLRSMRQAKYDARSLGHFGLAAKYYTHFTSPIRRYPDLFVHRLIRHYAEDGTGKDAQEKY ADIIPEIAEHTSQLERRAIDTERDVDSMKKAEYMGDHIGEQFNAMVSSVMKFGLFVELEN TIEGLIHISTMKDDYYEYVENQMALVGRNTHRTFQIGLPVAVKLMRVEKDQAEVDFELLH PEKTPTSEIKLPPRQSFNRNKGGQRNGNRNRRQNGQRSNNSNNKPFYKDKNVKRFSKNTS HKK >gi|269838499|gb|ACXB01000012.1| GENE 18 17424 - 17660 226 78 aa, chain - ## HITS:1 COG:L0338 KEGG:ns NR:ns ## COG: L0338 COG1314 # Protein_GI_number: 15672923 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecG # Organism: Lactococcus lactis # 1 76 5 80 82 64 43.0 5e-11 MYSLLMTILLILSVVIIIAVMMQPAKTDNAMSSLTGGAGDLFSKQKSRGFEAFMQRVTAV LLFLFFAITIAMVYVSAH >gi|269838499|gb|ACXB01000012.1| GENE 19 17790 - 19112 1562 440 aa, chain - ## HITS:1 COG:SP1128 KEGG:ns NR:ns ## COG: SP1128 COG0148 # Protein_GI_number: 15900994 # Func_class: G Carbohydrate transport and metabolism # Function: Enolase # Organism: Streptococcus pneumoniae TIGR4 # 1 429 1 432 434 595 71.0 1e-170 MSLITDIYAREVLDSRGNPTVEVEVYTEDGGFGRGIVPSGASTGEHEAVELRDGDKNRYE GKGVEKAVANVNGPIAKEIVGFEVTDQIAIDKAMIKLDGTPNKGKLGANAILGVSLAVAR AAADELQIPLYNYIGGSNAHVLPTPMMNVINGGAHSDNKVDFQEFMIMPVGAPSVKEAIR MGSETFHALKSLLAADGKATSVGDEGGFAPDFANNEEPLQYLIKAIEKAGYKPGKDVAIA VDVAASELWNDDDKKYKLRWSTGEEFTTEEFVKYLEGLVNKYPIISIEDPIDENNWEDWA SITKELGKKVQLVGDDFFVTNTEYLAKGIKMGAANSILIKVNQIGTLTETMEAIEMAKEA GYTAIVSHRSGETEDTTIADLVVATNAGQIKTGSMSRTDRIAKYNQLMRIEDQLEGVAEY KGIHSFYNLSAQAREDITNK >gi|269838499|gb|ACXB01000012.1| GENE 20 19181 - 19936 809 251 aa, chain - ## HITS:1 COG:SP1574 KEGG:ns NR:ns ## COG: SP1574 COG0149 # Protein_GI_number: 15901416 # Func_class: G Carbohydrate transport and metabolism # Function: Triosephosphate isomerase # Organism: Streptococcus pneumoniae TIGR4 # 2 249 3 250 252 323 64.0 1e-88 MRTPIIAGNWKMNKNPQETQEFLEGIKGKLPDASVVESVIAAPAIDLNTLVQFSKDEQLK TAAENCYFEDEGAFTGETSPKALSEMGVNYVVIGHSERRQYFKETDEDINKKAKAIFKNN MKPIICCGETLEQREAGETNEWVAGQVTNALKDLSAEQVANTVIAYEPIWAIGTGKTASS DQAQEVCHVIRETVAKLYDQTVADKVRIQYGGSVKPANIAELMSKEDIDGGLVGGASLDP ESFLQLVNYQG >gi|269838499|gb|ACXB01000012.1| GENE 21 20021 - 21223 1282 400 aa, chain - ## HITS:1 COG:lin2552 KEGG:ns NR:ns ## COG: lin2552 COG0126 # Protein_GI_number: 16801614 # Func_class: G Carbohydrate transport and metabolism # Function: 3-phosphoglycerate kinase # Organism: Listeria innocua # 1 400 1 396 396 510 68.0 1e-144 MAKLTVSDLDVKGKKVLMRVDFNVPVKNGVIGDDNRIVAALPTIKYIIENGGKAILFSHL GRIKKEEDKKELTLRPVAQRLSDLLGKPVTFVPVTRGAQLEDAVNGLNDGDVLLFENTRF EDLDGKKESGNDPELGKYWASLGDMFVNDAFGTAHRSHASNVGVATAMKAEGKKVAAGFL MEKEIKFLGEAVDDPKHPFVAILGGAKVSDKIGVIDHLLDKADKVIIGGGMTYTFYAAKG MSIGNSLVEADKIDVAKEILAKGGDKIVLPVDSVVAEKFDNDVPHKVVEGDIPDGYMALD IGPKSVAEFKDVLKDAKTVVWNGPMGVFEMSNYAKGTLEVGKFLGTLSDATTIVGGGDST AAVKQLGVGDQLTHISTGGGASLEYLEGKELPGIAAISNK >gi|269838499|gb|ACXB01000012.1| GENE 22 21352 - 22374 829 340 aa, chain - ## HITS:1 COG:ECs2022 KEGG:ns NR:ns ## COG: ECs2022 COG0057 # Protein_GI_number: 15831276 # Func_class: G Carbohydrate transport and metabolism # Function: Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase # Organism: Escherichia coli O157:H7 # 4 340 3 333 333 449 69.0 1e-126 MTVKIGINGFGRIGRLAFRRIHELGAKSNDIEVVAINDLTSPALLAHLLKYDSTHGTFPG EVSATDDAIVVDGKKYHVYAEPQAQNIPWVKEDGVDFVLECTGFYTSKEKSQAHLDAGAK RVLISAPAGSDLKTVVYNVNDDVLTADDRIVSAGSCTTNCLAPMAYFLNKEFGVEVGTMT TIHAYTSTQMILDGPVRGGNFRAARTAAANTIPHSTGAAKAIGLVIPELNGKLQGHAQRV PVVDGSLTELVSILDKDVTAEEVNAAIKKHTEGNESFGWNEDEIVSSDIIGTTYGSIFDP TQTEVTKAGDKQLVKTVAWYDNEYGFTCQMVRTLLKFATL >gi|269838499|gb|ACXB01000012.1| GENE 23 22442 - 23458 666 338 aa, chain - ## HITS:1 COG:lin2554 KEGG:ns NR:ns ## COG: lin2554 COG2390 # Protein_GI_number: 16801616 # Func_class: K Transcription # Function: Transcriptional regulator, contains sigma factor-related N-terminal domain # Organism: Listeria innocua # 1 337 5 341 348 283 43.0 4e-76 MDLLESVVPGLISEFLQRFDILKSIDLLAPVGRRVLSEHLHLSERVLRSQTDVLKSQGLL KTSPAGMSLSDEGRRVMNGLEPVANRFLGLTSQEKQLAERLNIERCFIVRGDQAESPVVS KQLGIVLNDALAKLLPEGNNTIVVMGGSTMASVATRLKPELSQHRQLIFVPGRGGIGESV SKQANSVAATMAKQTAGEAKSLYIPEQLSESTYHPLLNEPTVRPVLDLIVHAGVAIHGIG RADAMAQRRGVNSEIKSYLRKARAVGEAFGSFYNKEGRILYQVHRIGLQLQDVQHFNHVF AVAGGHDKAQAIESYMKIAPHQTILITDEGAANVILKK >gi|269838499|gb|ACXB01000012.1| GENE 24 23659 - 24984 873 441 aa, chain - ## HITS:1 COG:lin2555 KEGG:ns NR:ns ## COG: lin2555 COG1508 # Protein_GI_number: 16801617 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog # Organism: Listeria innocua # 20 438 18 447 447 283 38.0 7e-76 MVMKQGFTQNQTQQQKQVQRLAMTQTLQQSIQMLQYNAEELQNFLKQKEMDNPLITVEVA EERPLSKVSKNSDTHETFMNQIASDTEQSLFDYLLDQVHLTMRDTPLRKLVLFLLDYVDQ NGYLRITKDEIKQKTQADDIAIMDAITLLQQLDPPGVGARTLQESLMLQTENDEGSPEIA YMVLEESFDDLVDRNWEKIAQRYDITLAEVQEVFDYVRTLTPNPGAGFGKQDRGYITPDL IFKLENGEPRLIQSKASRPRVSFSQEYFEQLRKKADDEVSSYVNEKKREYDWIAKSLTQR QDTILRVGKIIFERQQDFFLQKSKELSPLMLRDVANKLHLHESTVSRAVNGKYIATPFGT FELRSFFSNAVNQTSDVSADAAKLKIKEIIDQEDKEKPISDAKIEKQLKAQGVTISRRTV AKYREALGIPSSSKRKRYLEK >gi|269838499|gb|ACXB01000012.1| GENE 25 25528 - 26121 668 197 aa, chain + ## HITS:1 COG:lin2612 KEGG:ns NR:ns ## COG: lin2612 COG0740 # Protein_GI_number: 16801674 # Func_class: O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Protease subunit of ATP-dependent Clp proteases # Organism: Listeria innocua # 1 197 1 197 198 276 71.0 2e-74 MNLVPTVIEQSSRGERAYDIYSRLLKDRIIMLSGPIDDDLANSIISQLLFLDAQDSEKDI YLYINSPGGVVTAGLAIYDTMNFIKADVQTIVMGMAASMASVLASSGTKGKRFALPHSEV MIHQPSGGAQGQQTEIEIAAEQILKTRKELNKILAENSGQPLEKINLDTERDNYLSAQDA VDYGLIDGIMEKNASLK >gi|269838499|gb|ACXB01000012.1| GENE 26 26198 - 26473 276 91 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0454 NR:ns ## KEGG: PEPE_0454 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 90 1 89 90 118 71.0 6e-26 MKYKEYQFVQLWDGRMGTIIKTLSSGGYLIEDNFWGWLEMKSKEDPEHYIFPNADVERRF SALEEEIEGEARMAEEWYEFRYKVMVSGLGN >gi|269838499|gb|ACXB01000012.1| GENE 27 26575 - 29382 2936 935 aa, chain - ## HITS:1 COG:lin1064_1 KEGG:ns NR:ns ## COG: lin1064_1 COG1705 # Protein_GI_number: 16800133 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Muramidase (flagellum-specific) # Organism: Listeria innocua # 775 927 48 201 201 86 33.0 2e-16 MEIKKHYKMFKSGKKWAFASIATASLGLVALNTNAEKAHADSDAQANTNSASQLDQQTKT APVNEKQVTLAKPATVKASSAAVTAQSAAPAPSAAQSAAKVNADSTAKADQHSAAAKVGT KATTSSAVKPAKEAASANAVKAAPASSAAKKVSTSVASSAAPSSAASKTVTSAAVKDSAA KEAVSSAANVKSSSAAAKTSVNSSAVSEAAKKDAKAEKTAEKKTDNSSKDYTIDNTYRLA DNEGSDQKTNNKIIVAHAVGQYSSARDVAIYEKREWDSSETYVQYIVGDGGRVYAVGEEG YVAWGAGKWANENAPVQVELAQTYSDSQFKKDYQTYVNLLRDSAKKWNIPTTLDSDEYTG IKSHVWVTEHVWGNHVDPYGYLGTHGITKEQFAHDLAYGFDNDAANDNQNNNQNDNHQND NQNNQNNNHQNDSSNNHGNQNNQSYHVGDKVTIKNSASHWATGQSIYNGVKGHTYKIIQT NGHKLLLDQVISWINDGDVYKAGSNSGSSNNHNNNHTTNNADIKVGTVVTINNNASHWAT GQSIYSGVKGKSYKVIQTNGNRLLLDKVISWINKGDVHVPGSNSNNNNSGNQNHNNGNNH NNNGNTESIHVGSKVTINNNAKRWATGQNIYSGVKGKTYTVIQMNGSRLLLDKVISWINK GDVHLPGSNGSQNNNNNNNNHANNNDGTIRVGTNVTIKPSAKRWATGQNIYYGVKGKTYK VIQMNGNRLLLDKVISWINKGDVYVPGSSNNNNSNSNNNHNNNGSNYHFTNQNWTAAQTN FVNSIASDVMNVCQNNHLYASVAMAQAVVESAYGASTLAQEAHNLFGIKADSTWHGATYT KNTQEVINGRVVTISAAFRKYDSFKDSIADYAKKLESRPQYANAFSNHAHNYVESVKAIK AGGYATAPTYVSSIVNCINNYGFYKLDGLNSAISL >gi|269838499|gb|ACXB01000012.1| GENE 28 29651 - 30580 762 309 aa, chain - ## HITS:1 COG:lin2615 KEGG:ns NR:ns ## COG: lin2615 COG1481 # Protein_GI_number: 16801677 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 309 1 309 323 358 59.0 8e-99 MSYASEVKKELTSLEVHEHNAKAELMALIRMNGSIGINNRQLVLNTQTENPAIARRIYSL LKNFYHLEAELSVRRKMKLKKNNLYIVRLRTGAQQLLNDLSILKDDFQINETVPEGLLST ESELRSYLRGAFLAGGSVNNPETSRYHLEIYSLYEAHNQMIADWINQYHLNARTTERRSG YIVYLKEAEHIADFLQLIGATNSMLKFEDVRIMRDMRNSVNRLVNCENANMNKVANASMK QINNIQYIDEVVGLDELPPKLRDIAKTRLAHREVSLKELGELVPGGPISKSGVNHRLRKI NQYAEKLRA >gi|269838499|gb|ACXB01000012.1| GENE 29 30592 - 31593 946 333 aa, chain - ## HITS:1 COG:SP1565 KEGG:ns NR:ns ## COG: SP1565 COG0391 # Protein_GI_number: 15901408 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 4 324 1 320 325 348 55.0 6e-96 MSKIKGPKIVVIGGGTGLPVILNELHKRNADVTAIVTVADDGGSSGIIRDYVNVVPPGDI RNVMVALSDMPPELKDIFQYRFKSEDNFLAGHAIGNLIIAALSEMRGGIDPAIRELSQML QIEGHIYPASAEPLVLHAKFTDGTSLAGESEITAAHKDVKQVWVENNPWSEHKKPRAVPE ALEAIEAADEIILGPGSLFTSILPNLMIEDIRKAVLATQAEIVYICNIMTQKGETIGFTD ADHVHVLNQHLGRNFVDTVLVNTEKVPESYMDFNRYDEVSKQVIHNFKGLREQGVRVISD NFLKLRDGGAFHDGEKVVDELMHICSNPIKKQA >gi|269838499|gb|ACXB01000012.1| GENE 30 31590 - 32477 695 295 aa, chain - ## HITS:1 COG:SP1566 KEGG:ns NR:ns ## COG: SP1566 COG1660 # Protein_GI_number: 15901409 # Func_class: R General function prediction only # Function: Predicted P-loop-containing kinase # Organism: Streptococcus pneumoniae TIGR4 # 3 295 4 296 296 377 60.0 1e-104 MNESLKLVVVTGMSGAGKTVAMQSFEDMGFFCVDNMPLALLPKFWELIKENGNITKVALA VDLRSDAFYEQVVTMLTDTQALSGINRDILFLDATNEELIARYKETRRAHPLAMDGRVAD GIRKERELLAPIKSEAQLVIDTSNLTPRELRSKIFNQFSTNKTVPKFHIEVVSFGYKYGL PIDADITMDVRFLPNPYYVPELKNQVGTDQPVYDYVMNQPATEKFYQAYLKLLMDIMPGY QQEGKSNLTIAIGCTGGQHRSVAIAERLGNDLAKHYVTHISHRDVNKRKETVNRS >gi|269838499|gb|ACXB01000012.1| GENE 31 32663 - 35506 2289 947 aa, chain - ## HITS:1 COG:SPy1825 KEGG:ns NR:ns ## COG: SPy1825 COG0178 # Protein_GI_number: 15675653 # Func_class: L Replication, recombination and repair # Function: Excinuclease ATPase subunit # Organism: Streptococcus pyogenes M1 GAS # 2 940 1 942 942 1452 75.0 0 MVNDKIIIHGARAHNLKNIDVTIPKNKLVVVTGLSGSGKSSLAFDTLYAEGQRRYVESLS AYARQFLGQMDKPDVDSIDGLSPAISIDQKTTSKNPRSTVGTVTEINDYLRLLWARVGTP VCPNDGTIITSQTVEQMVDRVMELSERTKVQIISPIVRAKKGQHKKVFASIKREGFVRVR VDGETMDVEEVPELEKSKAHSIDVVIDRIVVKEGIHSRLFDSFEAALRLSKGYATADAIG GDPILFSEHYACPICGFTVGELEPRLFSFNAPFGACPDCDGLGVKLEVDMDLVVPDQDKT LREGALAPWNPISSQYYPKLLEQAAESFGIDMDTPFKDLPKDARQLILYGSKGKQFHFHY ENDFGGVRDVDTEFEGVINNVNRRYQETNSDFTRDQMRSYMRELTCQTCHGYRLNRKARA VKIAGQHIGEVSELPIDRCTAFFEKLNFSEQDTVIATPILKEIRDRLNFLRNVGLEYLTL SRSARTLSGGEAQRIRLATQIGSNLSGVLYILDEPSIGLHQRDNDRLISSLKKMRDLGNT LIVVEHDEDTMRAADYLIDIGPGAGENGGEVMAAGTPKQVERSRKSLTGQYLAGKKSIPV PTERRDGNGLAIQLKGVQENNLKNIDVKFPLGKFIAVTGVSGSGKSTLVNMVLKRVLAQK LNRNSEKPGKYKSVSGIKNIEKVINIDQTPIGRTPRSNPATYTSVFDDIRGLFAQTNEAK LRGYTKGRFSFNVKGGRCEACKGDGILKIEMNFLPDVYVPCEVCHGTRYNSETLEVKYKG KNIAEVLDMTVEEAAKFFAPIPKIARKLQTIIDVGLGYVHLGQSATTLSGGEAQRMKLAA ELHKKANGKNFYILDEPTTGLHTDDIKRLLDVLQRLVDNGNTVLVIEHNLDVIKTADHLI DLGPEGGDGGGQIVATGTPEEIAEVAESYTGQYLKPVLERDRKLQKK >gi|269838499|gb|ACXB01000012.1| GENE 32 35519 - 37522 1971 667 aa, chain - ## HITS:1 COG:SP1238 KEGG:ns NR:ns ## COG: SP1238 COG0556 # Protein_GI_number: 15901100 # Func_class: L Replication, recombination and repair # Function: Helicase subunit of the DNA excision repair complex # Organism: Streptococcus pneumoniae TIGR4 # 1 664 1 660 662 946 72.0 0 MIEREENRQFELVSKYQPTGDQPTAIKQLVDGIQKGEKEQILLGATGTGKTFTISNVIQQ VNKPTLILSHNKTLAGQLYGEFKQFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSI NDEIDELRHSATSSLLERNDVIVVASVSSIFGLGDPREYRDQALSLRVGQEIDRNQLLRE LVDIQYERNDIDFQRGRFRVHGDVVEIFPAANEAHSIRVEFFGDEIDRMREMDALTGEII GDRDHITIFPATHFMTNEDRMEHAIEGIEAELKDRLVELEGQGKLLEAQRLKQRTTYDIE MLREMGYTNGIENYSRHMDGRKPGEPPYTLLDFFPDDFLLVVDESHVTMPQVRGMYNGDR ARKQQLIDYGFRLPSALDNRPLKLEEFEKHVHQVVYMSATPGDYETARTDHVVQQIIRPT GLLDPTIEVRPIMGQMDDLLGEINQRVEKDERVFVTTLTKKMAEDLTDYLKDMGIKVAYL HSDVKTLERTRIIRNLRLGKYDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNTRSMI QVAGRAARNEHGHVIMYADHVTQSMKETIDETARRRSIQEAYNKEHGITPHTIKKDIRSL ISATTETEDTGEKDDFLDVDFADMDRKDQKEMIESLEDQMRAAAKELDFERAANLRDTVL ELKAQID >gi|269838499|gb|ACXB01000012.1| GENE 33 37654 - 38283 712 209 aa, chain - ## HITS:1 COG:lin2634 KEGG:ns NR:ns ## COG: lin2634 COG1896 # Protein_GI_number: 16801696 # Func_class: R General function prediction only # Function: Predicted hydrolases of HD superfamily # Organism: Listeria innocua # 1 207 1 207 215 264 63.0 7e-71 MGMHQFFKSLSNLETIYRAPGFFKYQKHSVAEHSFKVAEIAQFLGDVEEHAGNQINWRLL YEKSLNHDYNERFIGDIKTPVKYATADLRKMLANVEDSMKDNFIKNEIPAEFQAAYERRL SEGKDDTIEGQILAVADKIDLLYESFGEIQKGNPEDVYTDIYKESLTTIVKYKDMPSVQY FLEKVLPELLNEEFTDQLKLEKISRTIIQ >gi|269838499|gb|ACXB01000012.1| GENE 34 38700 - 40424 2161 574 aa, chain - ## HITS:1 COG:SPy1224 KEGG:ns NR:ns ## COG: SPy1224 COG1109 # Protein_GI_number: 15675188 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Streptococcus pyogenes M1 GAS # 1 573 1 571 572 627 53.0 1e-179 MNWEDSVKEWQDFAYLDFNLKQELKELAKDPQALKEAFYAPMEFGTAGMRGVMGPGINRM NIYTVRQATEGLANFMDTLTPEDKQRGVAISFDSRYHSQEFALEAAGVLGNHNIPTFVFD SMRPTPELSFTVRELDTYAGIMITASHNPKQYNGYKIYGPDGGQMPPMESDRITEYIRKV TDIFGVKALTQGQLREKGLMTLIGEDIDQKYLAQVKTVSINHDLIKKYGADMKLIYSPLH GTGKVVGGRALENAGFKDYTMVPKQAIADPEFGTTPFPNPEFAQTFDLAIELGKKQQADL LIATDPDADRLGAAVRLPNGDYKLLTGNQIAAVMLEYILTAHDEAGDLPKNAAAVKSIVS SELATRIAEAHGVEMIDVLTGFKYIADQIKHYEETNEHTFMFGFEESYGYLVRPFVRDKD AIQGIVLLAEIAAYYRSKGQTLYDGVQNLFTTYGYHEEKTISKDFPGVDGKAKMAAIMEK VREERPDHFDDVAVVETQDFLSQTKYADNGETSPIELPKADVLKFKLADGSWIAIRPSGT EPKIKFYIGAVGESEEATLKKIENYEKAIDGLIN >gi|269838499|gb|ACXB01000012.1| GENE 35 40670 - 41593 602 307 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 [Streptococcus pneumoniae SP6-BS73] # 5 306 2 306 306 236 42 4e-61 MAKQYDVIVIGAGPAGMTAALYASRANLSVLMLDRGIYGGQMNNTAAIENYPGFKSILGP DLAKEMYESSTQFGAEYAYGSVESIRDDGTTKLVKTDMGEEFIGKAIIIGTGSEYKKLGV PGEEDFSGRGVSYCAVCDGAFFKGMHLIVVGGGDSAIEEGIYLTQLASKVTVIHRRDQLR AQKISQDRAFANPKMEFIWNSNVTEIVGDDKVTGVKVKNNQTGEDSFIEAAGVFIYVGVK PMTAPFKDLGILDENGWIPTDTLMHTKVPGIFAVGDVRKKNLRQVATAVGEGGTAGQQAY EYIQSLS >gi|269838499|gb|ACXB01000012.1| GENE 36 41784 - 42659 1008 291 aa, chain - ## HITS:1 COG:SPy0224 KEGG:ns NR:ns ## COG: SPy0224 COG1210 # Protein_GI_number: 15674413 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose pyrophosphorylase # Organism: Streptococcus pyogenes M1 GAS # 1 291 1 295 299 407 71.0 1e-113 MTKVRKAIIPAAGLGTRFLPVTKASPKEMLPIVDKPTIQYIVEEARKSGIEDILIITGKG KRAIEDHFDAVPELEANLKAKGKKQMLKMVEETTGLNMYFKRQSHPRGLGDAVLTAKTFV GNEPFVVMLGDDLMEDKVPLTKQLVDSFEDTGASTLAVLPVPHEEVSKYGVIDPSEEVEK GLYNVSKFVEKPAVDEAPSNLAIIGRYVLTPEIFNILENQKPGEGNEIQLTDAIDTLNKK QRVFAKVFNGDRYDVGNKFGFLKTNIEYGLKHPETKDELKAYIKELAKTLK >gi|269838499|gb|ACXB01000012.1| GENE 37 42682 - 43698 1209 338 aa, chain - ## HITS:1 COG:SP2091 KEGG:ns NR:ns ## COG: SP2091 COG0240 # Protein_GI_number: 15901906 # Func_class: C Energy production and conversion # Function: Glycerol-3-phosphate dehydrogenase # Organism: Streptococcus pneumoniae TIGR4 # 3 338 4 336 338 397 61.0 1e-110 MAKKVAVLGAGSWGSILANMLVQNGNDVVAWTNMEAQAQELNDQHTNEHYVPGFKYDERL VATTDLEFALKDADAVLFVVPTKVMRLVAQQMVAVLEKTKQQPVIIHASKGLELGTHKRL SEVLEEEIPSQYRKAIVVLSGPSHAEEVAKQDLTLVTAASADLASAEMVQKLFMNHYFRV YTNDDIIGVEMGAALKNVIAIGAGALHGLGYGDDAKAALITRGLAEISRLGVAFGAKPLT FIGLSGVGDLIVTATSVHSRNWRAGNELGQGMQLQEVIDTMGMVIEGIPSTKAAYELAQQ KHIEMPITEAIYDVLYNDKGVKEVIDDLMHRDGKSELE >gi|269838499|gb|ACXB01000012.1| GENE 38 43775 - 44620 757 281 aa, chain - ## HITS:1 COG:lin2625 KEGG:ns NR:ns ## COG: lin2625 COG0682 # Protein_GI_number: 16801687 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Prolipoprotein diacylglyceryltransferase # Organism: Listeria innocua # 1 265 1 263 277 293 58.0 3e-79 MNLSVGALNPIAFSWGSLQVHWYGIIIASAVVLATILAVREARRRRVDPDRIYDLILWSL PVAIISARAYYVIFEWGYYQNHLSEIIRVWDGGIAIYGALIGAGIVVYLFCRYYWIPVWL MLDIIAPVLIMAQGIGRWGNFMNQEAFGRVTSLAFLQSLHLPHFIIQQMWINGAFRQPTF LYESVWDILGFIVLMSLRHVPKLFKQGEIFLSYVIWYSFGRFFVEGMRTDSLMLLGIRVS QWLSVVLFMGAIGLLIWRRTRVQNPVPDYLDGNQFAPKDLE >gi|269838499|gb|ACXB01000012.1| GENE 39 44633 - 45571 926 312 aa, chain - ## HITS:1 COG:lin2626 KEGG:ns NR:ns ## COG: lin2626 COG1493 # Protein_GI_number: 16801688 # Func_class: T Signal transduction mechanisms # Function: Serine kinase of the HPr protein, regulates carbohydrate metabolism # Organism: Listeria innocua # 1 310 1 308 312 358 58.0 9e-99 MADSVSITELVKKIRLDVFYGEDLLDKKQVTVSDISRPGLELTNYFKFYPRERIQLFGQT EISYAKDSMTSADRTVVYSQMADKQTPAFVISRGLPVPKELIKAAKDNGVPILTSTLPTS RLLSNMTNYLEDRLAERDSVHGELVEIYGLGVLITGDSGIGKSETALDLIKRGHRLIADD RVDIYQQDEQTLIGEAPQILRHLLEIRGVGIIDVMNLFGASSVKNSTDINLIVHLQNWDK ETHFDRLGNGEQTRHFFDLDIPKITIPVRVGRNLGDIIEAAAMNFRAKNMGYDATKVFDQ NLNALIKDNSQA >gi|269838499|gb|ACXB01000012.1| GENE 40 45587 - 45946 351 119 aa, chain - ## HITS:1 COG:BH3591 KEGG:ns NR:ns ## COG: BH3591 COG1950 # Protein_GI_number: 15616153 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Bacillus halodurans # 7 111 7 107 119 62 43.0 1e-10 MRFWQRVLVNGILFVALTGFFQNSGNFYVSNIWIALAASLVLAILNASVRPVLQIISLPI TLLTLGFFSIVINALMLTFTSALVGPANFYFSSFGMTMLISVILSICNMIISNHFSNRY >gi|269838499|gb|ACXB01000012.1| GENE 41 45965 - 46279 320 104 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0439 NR:ns ## KEGG: PEPE_0439 # Name: not_defined # Def: putative stress-responsive transcriptional regulator # Organism: P.pentosaceus # Pathway: not_defined # 6 104 4 104 104 120 57.0 1e-26 MKSGFKSKFTKSNDRFVAGVCGGIAEHFGWDKSLTRIIALVLILLSHGLLLIPYFILAWY MPSQNTGFFQQFANWTGFSGKAPGQKQSRQRKEIKDAEVHDVDE >gi|269838499|gb|ACXB01000012.1| GENE 42 46478 - 47140 675 220 aa, chain - ## HITS:1 COG:SPy1240 KEGG:ns NR:ns ## COG: SPy1240 COG0704 # Protein_GI_number: 15675200 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate uptake regulator # Organism: Streptococcus pyogenes M1 GAS # 5 216 6 217 217 171 43.0 8e-43 MQGIFKEELKRLLERFTEMGLDVGEQIYQATKSFIDHDRELAQSVIEHDEKVNVAEVRLE DQAINLMALQQPVANDFRQVIVVLKASSELERIGDHAVGIAKETIRIKGHQRDAIIEAEI AEMTHLIRGMLDATIDAYVKDDGRLAKEIIDANHQIETSFKKIRQSIASKMKNDAKVVTG GTGYLMVASYLERIGDHVINVVEWIMYNQTGKITELSGDN >gi|269838499|gb|ACXB01000012.1| GENE 43 47153 - 47911 324 252 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 5 248 1 240 245 129 36 6e-29 MSNNVVTAEDVRLSYGETEALHGINLNLPQNQITALIGPSGSGKSTFLRCLNRMNDLIPE VRVTGTIRVAGQDIYDAQTDEADLRRRVGMVFQQPNPFPFSVYDNVTYGLRLAGITDPKV LAERVETSLKQAAVWQETKDHLKSNALSFSGGQQQRICIARVLAVQPEIILLDEPTSALD PISAGKVEESLVALKENYTLAVVTHNMQQASRISDQTAFFLNGQLIEAGPTAKLFLNPDQ TATSDYLNGKFG >gi|269838499|gb|ACXB01000012.1| GENE 44 47924 - 48721 281 265 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 30 261 11 240 245 112 31 6e-24 MQTNVNESSILRFPTNREIALETHDLQVFYGEKQALFDASLQFPRYSITALIGASGSGKS TYLRSLNRMNDGIARVTGSITYRGLDINTNNVDIYQMRRRIGMVFQRPNPFAKSIERNIT FPLREHGVKDSAQLAEVTETSLRQAALWDEVHDRLNASALALSGGQQQRLCIARALAMNP DILLLDEPASALDPVSTAKIETTLRELKKRYTIIIVTHSMEQASRLSDYTAFMHLGKIVE FDTTKNIFTNPREKLTEDYISGNFG >gi|269838499|gb|ACXB01000012.1| GENE 45 48735 - 49622 837 295 aa, chain - ## HITS:1 COG:lin2640 KEGG:ns NR:ns ## COG: lin2640 COG0581 # Protein_GI_number: 16801702 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, permease component # Organism: Listeria innocua # 1 294 1 294 294 358 65.0 6e-99 MKAKRIDRIATGVIYAMVGLVVLILIGLLGFILATGLPHVSWRFLTSSAAAFSAGDGIGD QLFNSFYLLVLTLILSLPIALGAAIYLNEYAPQNKITEIMRIMIEVLSSLPSVVVGLFGF LLFVVQFQLGFSILSGAIALTLFNLPLLTRSIENALAGVPNLQREAGLALGISRWHTITK VILPAALPGILTGVILSAGRVFGEAAALIFTAGQSAPSLNYADWNPLSSTSPLNIFRPAE TLAVHIWKINTEGIMPDASQVSAGASAVLIIVILIFNFSARRLGNWVYRRITASR >gi|269838499|gb|ACXB01000012.1| GENE 46 49619 - 50533 721 304 aa, chain - ## HITS:1 COG:lin2641 KEGG:ns NR:ns ## COG: lin2641 COG0573 # Protein_GI_number: 16801703 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, permease component # Organism: Listeria innocua # 6 304 6 307 307 317 62.0 1e-86 MIDEIQKELTQKSPAARQDQLGKLIARICVGVIMLVVLAILFMITSKGLATFSENKISVG DFFTKTIWNPTAKPTPLVGALPMIVGSFAVTLGSALLAAPLAMATAIFMVEIANKRRRGL LQAVIELLVGIPSVVYGFVGLTVVVPALRSIFGGTGFGILAGALVLLVMILPTVTAMYVD SLQAVPRHYREASLALGATRWQTISKVVVRASLPGLLTAIIFGMARAFGEALAVQMVIGN AAVLPKDVLTPAATLTSVLTTGIGNTVLDTLPNNALWSLALVLLIMSLFFNLLIRMIGKK GAFK >gi|269838499|gb|ACXB01000012.1| GENE 47 50526 - 51407 904 293 aa, chain - ## HITS:1 COG:lin2642 KEGG:ns NR:ns ## COG: lin2642 COG0226 # Protein_GI_number: 16801704 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, periplasmic component # Organism: Listeria innocua # 25 288 39 302 302 303 59.0 2e-82 MNKWLKLLLSCGLILGIGLLAGCQNKDATQKVTIVGSTALQPLVEKAAADYQVNHPQAQI TVQGGGSGTGLGQVQQGAVQIGNSDVYAGQQDGIRASQLKDHQVAVVGIAPVINKDVGIK NLSMTELQKIFTGKITNWKQVGGPDEKIVIINRAQGSGIRKTFEQTVLPHGGAVNAQEQD ANGTVQKVVQATPGAISYLSFSYFNKQLQPIAIDGVQPTAENVQTNRWKIWSYEHMYTQL KTNSATRDFLKYMTSQTVQKNLVSDLGYISIHDMQVKRTMNGKVIPIRGEQND >gi|269838499|gb|ACXB01000012.1| GENE 48 51635 - 53023 1226 462 aa, chain - ## HITS:1 COG:lin2643 KEGG:ns NR:ns ## COG: lin2643 COG0642 # Protein_GI_number: 16801705 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 105 452 229 582 591 178 35.0 2e-44 MSSSQKKGIRKTIQFGLASLIGNAFMAFLVYKLIVKENPRVTRVDMTLMIAVILLITVIE VIVFWSNQKNIIERQHQFRINLEETIKGNKVPKIYLDPDDPFYKLSKAVNEISKHERHQI HELTNQQNELKAIMDNLPVGVLVINRHRELQVANTYAINRLGITALDIPHPYTLDVRNQE LRNLVDQVFQSRQSVTKTLELEDGGQSHIFETNVVYSPKVHHKFEIIVLLYDVTESVRSK RIEQDFVNNASHELRTPITSIAGFAETLLEGAKDDPETLDNFLNIIKSESDKLVRLADDI LTMSQVKNEPKNWKKVNLYAYVEQQFHMLQNNLQEMQLTVENKIPETTMETVVENDLFQI TKNLITNAISYNRHGGKIKVEYASHHDSWELSVSDTGIGIPLDQSERVFERFYRVNNAVK GGTGLGLAIVKEAVVDMGGSVRIESDDDDSGTTVVVRFKRRV >gi|269838499|gb|ACXB01000012.1| GENE 49 52995 - 53699 619 234 aa, chain - ## HITS:1 COG:SA1516 KEGG:ns NR:ns ## COG: SA1516 COG0745 # Protein_GI_number: 15927271 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Staphylococcus aureus N315 # 1 228 1 228 234 226 48.0 3e-59 MAMTILVVDDEPAIVTLLTYNLKQANYQVISVDNGVDAVKEVQRGRVDFVIMDLMLPQLD GVEATKQIRKFNEQIPIIMLTAKSSEVDKILGLELGADDYLTKPFSPQELISRIKAILRR TNRVVDLKKIVPELPVTGVTIDFKRLTVQKNEQPVALTPNEFRLLKFLFQNSNQVLSRDQ ILEQVWGYEYGGQTRIVDMHISHLRDKLEDDPKHPRLIKTIRGFGYEFFTKEGH >gi|269838499|gb|ACXB01000012.1| GENE 50 53711 - 54709 841 332 aa, chain - ## HITS:1 COG:lin2653 KEGG:ns NR:ns ## COG: lin2653 COG1186 # Protein_GI_number: 16801714 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor B # Organism: Listeria innocua # 1 326 1 326 327 427 64.0 1e-119 MAEPDFWNDQEKAQKIINETNVLKAKYDNFKNLTDHVENLEVTLELLEMEADPDVQAEFE DELSQTAKLLRDYRLGLLLNGKYDANNAILEIHPGAGGTESQDWGSMLLRMYTRWAEQHQ FKVQIEDYQAGEVAGISSVTIRVMGHNAYGYLRSEKGVHRLVRLSPFDSAGRRHTSFASV DVMPELDDSVEVNINPDDLRVDVYRSSGAGGQHINKTSSAVRITHLPTGIVVASQAERSQ LQNRVTAMNMLKAKLFELEEQKKAEEKAKLEGTQLEIGWGSQIRSYVFHPYSMVKDHRTN LETANVQGVMDGDLDDFINAYLQWKLQKRNPK >gi|269838499|gb|ACXB01000012.1| GENE 51 54905 - 57268 2593 787 aa, chain - ## HITS:1 COG:SPy1805 KEGG:ns NR:ns ## COG: SPy1805 COG0653 # Protein_GI_number: 15675639 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecA (ATPase, RNA helicase) # Organism: Streptococcus pyogenes M1 GAS # 1 783 1 783 839 1011 67.0 0 MANILKKWVESDAREIKRLGKKADKIDALKDEMAQLSDEELKAKTPEFKERLKNGETLDD ILIEAFAVAREGAKRVLGLFPFRVQLIGGMVLHGGNIAEMKTGEGKTLTATLPVYLNALG GEGVHVVTVNEYLAERDSTEMGELYKWLGLTVGVNTAEMSPDEKREAYNCDITYSTNSEI GFDYLRDNMVVYKEDMVQRPLNFALIDEVDSVLIDEARTPLIISGQTEPSVTLYQRADRF VKTLTDGDYTIDWESKSISLTENGIRRGEKYFNTDNLYDVENSALNHHIDQALRANYIMT KDKDYVVSDDGEVLIVDSFTGRVMEGRRFSDGLHQAIEAKEHVEIQDGSKTMANITYQNL FRMYKKLSGMTGTAQTEAEEFREIYNMEVVSVPTNRPVVRDDRPDLLYPTLESKFKAVVK EIKKLHTKGQPVLVGTVAVETSEYLSRLLDRERIPHVVLNAKNHAREAEIVANAGQKGAV TIATNMAGRGTDIKLGPGVVELGGLAVIGTERHESRRIDNQLRGRSGRQGDVGMSQFYLS LEDDLMIRFGSERIKDLLSRMKVADEDAVIQSRLISRQVESAQKRVEGNNYDARKNVLQY DDVMRAQREVIYAERQQVIMEEHSLKDVLMPMVYRTIDRVVDAHTAKTKKSYDLDTIVEF ARTTLVNENDINIEDLEGKSANEIKDYLKQLADQMYKQKEDALYAPEQILEFEKVVILRV VDQHWTDHIDAMDQLRQSVGLRGYGQLNPLVEYQQEGYRMFNEMVTDIEYETTRLFMKSE IRQNLER >gi|269838499|gb|ACXB01000012.1| GENE 52 57417 - 57971 872 184 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116492230|ref|YP_803965.1| SSU ribosomal protein S30P / sigma 54 modulation protein [Pediococcus pentosaceus ATCC 25745] # 1 184 1 184 184 340 91 2e-92 MLDFNVRGENIEVTESIRDYVEKRIGKIEKYFDQGANPKAHVNLKVYQDRTAKVEVTIPL PYLVLRAEETSPDLYASVDLVTDKLERQIRKYKTKINRKSRETGYKGVEIPQEDAREDEE EASEFDIVRTKQVSLKPMGAEEAILQMDMLGHNFFIYEDADTGSVDIVYRRHDGRYGLIE SANE >gi|269838499|gb|ACXB01000012.1| GENE 53 58100 - 58774 380 224 aa, chain - ## HITS:1 COG:L0319 KEGG:ns NR:ns ## COG: L0319 COG1040 # Protein_GI_number: 15673071 # Func_class: R General function prediction only # Function: Predicted amidophosphoribosyltransferases # Organism: Lactococcus lactis # 1 224 1 216 216 123 35.0 2e-28 MNRCLLCNRMLNRRVDLSFILSFQRAQPQLLCHHCRNQLVNLQERKVCVSCGRLANQLQC PDCQKWNDQFNNQALFQYNAFMKEFFQRYKFQGDYWLRKAFCNDFINFIQSLVKEDEHLV PIPVDQGTIRVRGFNQVAGLIEGLEFEPVLISQRSKQARHQFQRSRRERLQRENPFRVVE PNKVAGAKWVIIDDIYTTGVTVRQAGRELSKHGARQVRSITLCR >gi|269838499|gb|ACXB01000012.1| GENE 54 58771 - 60090 555 439 aa, chain - ## HITS:1 COG:SP2208 KEGG:ns NR:ns ## COG: SP2208 COG4098 # Protein_GI_number: 15902015 # Func_class: L Replication, recombination and repair # Function: Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) # Organism: Streptococcus pneumoniae TIGR4 # 4 436 2 430 432 322 42.0 1e-87 MEAKIKEKYYGRLVPVNQAEATDPTINYFPAVIVKKRRIQCQRCGATTKLKEGSLPSQQY YCRHCINLGRMSTLVKLGNLPEPNHFPVGRSYLKWQGQLTPDQQRCANEIISSIKQQTDR LLWAVTGAGKTEMLFPGINFALKKALRVAIASPRIDVVLELHPRIQAAFPEIAIALLHGH TSTPYTYTQLVLCTTHQLLRFYHAFDVLIIDEVDSFPFAMNPALHYAAHQARKECGTTIY LTATPDGQLLKESRAHRLPTSYLTRRFHGHPLPEIKMVSGCNWQKLIHRQRLPERLRQFL MAQVKAQRQFLVFVPRIDQLSSVLQAIQKQFPELNLATVYAEDPDRIEKVSAMREGQLTG LITTTILERGVTFPGIDVAVLGADDEIFSMAALVQIAGRVGRSPKRPTGTVLFICQMLTR RIKRAQRQIKFMNQQAFQQ >gi|269838499|gb|ACXB01000012.1| GENE 55 60122 - 60760 616 212 aa, chain + ## HITS:1 COG:SP2209 KEGG:ns NR:ns ## COG: SP2209 COG1739 # Protein_GI_number: 15902016 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 6 208 5 207 211 182 46.0 5e-46 MKLILSVKEPVTTEQDIKKSRFISRIIPVQTEEEAQTKLQDIREIEVKATHNCFAYVLGD HQDIQRASDDGEPSGTAGAPILEVLKRENLTNVLVVVTRYFGGIKLGAGGLIRAYGSSTS LAVQSATLMESVDQKLLAITIDYQNNDQLTYYLEQHQITQVNHEYTTQVITTVAVDQDQV ADLKAELTGLFSGNVSFKDGGQQRVQVPYHPQ >gi|269838499|gb|ACXB01000012.1| GENE 56 60828 - 62003 1140 391 aa, chain - ## HITS:1 COG:L35751 KEGG:ns NR:ns ## COG: L35751 COG0472 # Protein_GI_number: 15673776 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase # Organism: Lactococcus lactis # 1 352 12 387 443 342 51.0 7e-94 MRFEIVVSLFATMIISAILTPFVRRIAFKIGAVDKPNARRVNKVPMPTMGGLAIFLAFNF SLFFLLRNQIPNPQFYGIFFGECIIMLTGIIDDIFELKPSQKMIGILLAALAVYWFAEVQ MTTLTLPFIGIVHLGWLSLPITLLWIAAITNAINLLDGLDGLATGVTIIALFTTGFTGLF FLPSTNIYIVIMIFTLVAAEVGFLPYNFFPARIYLGDTGALFIGFMIAVFSLSGLKNATF ISVLIPVMILGVPLTDTIYAILRRLLNKQSIAHADKRHLHHRLMQMGLTHRQTVLVIYGI SMIFSFIALLYPLSTLWGSVLLTIGILVGIELFVEAIGLVGENRTPMLSWIKRLVRTTTS KTASNEFKEEDTLKDRVRSRSERHQQKKHHD >gi|269838499|gb|ACXB01000012.1| GENE 57 62225 - 64057 1725 610 aa, chain - ## HITS:1 COG:lin2235 KEGG:ns NR:ns ## COG: lin2235 COG0531 # Protein_GI_number: 16801300 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Listeria innocua # 1 610 1 606 607 654 56.0 0 MFSYLKRILIGKPLKTLDESGQALTKFKALALLSSDALSSIAYGTEEILSVLIVLSAAAT WYSIPIAAIVLVLLFAITVSYRQIIKAYPSGGGAYVVASKNWGTSAGLVAGGSLLVDYML TVAVSVTSGTEAITSAIPALQKYHVAIAVLIVLGIMALNLRGLRESASFLTIPVYLFVVV ISIMIIVGLYNIVTGQVTYHAAAAIGSTVPGMTFVLFMRALSSGSSSLTGVEAISNAVPN FKKPRRKNAAATLAIMSLILASFFAGITFLAYYSGITPMSSQTVLSQIGVTVFGHGIFYY ILQLSTALILAVAANTGFSAFPMLAYNLAKDKFMPHAYMDRGDRLGYSNGIISLAAGAIV LILIFGGQTGLLIPLYAIGVFVPFTLSQSGMIVHWKREGGAHWWINASANLLGALLSAVL VVCLLFLHFSNVWPYFVVMPLLLRMFYKIRKHYDEVADQLRVVEKGKVNLHDYDGSTVIV LVSNVTQVTSGAINYARSIGDYVIAMHVSFDANPEKEHKTAMEFKAEYPDVRFIDIHSSY RSITNPTLRFCDVIAKRAAERNYTTTVLVPQFVPRKPWQNILHNQTGLRLRAALNSRENI IVSTYNYHLK >gi|269838499|gb|ACXB01000012.1| GENE 58 64357 - 65979 1622 540 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|167855908|ref|ZP_02478658.1| 50S ribosomal protein L28 [Haemophilus parasuis 29755] # 2 539 3 543 547 629 59 1e-179 MAKEIKFSEDARTKMLKGVDKLADTVKSTIGPKGRNVVLEQSYGSPTITNDGVTIAKSIE LEDHFENMGAKLVSEVASKTNDIAGDGTTTATVLTQAIVNEGMKNVTAGANPVGIRRGIE KATEKAVAALHNMSHEVKTKDDIAQIASISSANPEVGKLIADAMEKVGNDGVITIEESRG VDTTLDVVEGMQFDRGYMSQYMVTDNDKMEANLDNPYILITDKKIANIQDILPLLQSVVE QSRSLLIIADDITGEALPTLVLNKMRGTFNVVAVKAPGFGDRRKEQLEDIAILTGGTVIT DDLGLNLKDVTIEQLGQANKVTVTKDDTTIVEGSGSQEQIAERVAMIKQQISETTSDFDK EKLQERLAKLAGGVAVIRVGAATETELKEKKYRIEDALNATRAAVEEGFVPGGGTALVNV IASLEDLDAEGDELTGINIVRRALEEPVRQIAENAGEEGSVIVTKLKTQKDGVGYNAATD EWVDMIEAGIVDPTKVTRSALQNAASVSALLLTTEAVVADLPEEKPAAPAAPNPGMGGMM >gi|269838499|gb|ACXB01000012.1| GENE 59 66002 - 66286 301 94 aa, chain - ## HITS:1 COG:lin2175 KEGG:ns NR:ns ## COG: lin2175 COG0234 # Protein_GI_number: 16801240 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Co-chaperonin GroES (HSP10) # Organism: Listeria innocua # 1 92 1 92 94 101 58.0 3e-22 MLKPLGDRVILEAKDEEEQTVGGIVLASNAKEKSQTGKVVAVGNGRVLDDGKTLPMNVKV GDTVVYDKYAGTEVTYEDQKYLVVHEKDLVAVVE >gi|269838499|gb|ACXB01000012.1| GENE 60 66476 - 67123 571 215 aa, chain + ## HITS:1 COG:SA1838 KEGG:ns NR:ns ## COG: SA1838 COG1266 # Protein_GI_number: 15927606 # Func_class: R General function prediction only # Function: Predicted metal-dependent membrane protease # Organism: Staphylococcus aureus N315 # 6 211 6 222 247 90 34.0 2e-18 MKISKSSLLTLITYLAIFLLPSVINLFVRLGASFIWVETIDYLVGAALLVVINLKNNEIN QIETRRIPFFRAIAWGIIGTALVIVLQFVVSYVTFILGQNPASANTATLVTLAKINPFFV LAITVGAPIMEELVFRKVLFGNLSTLFGMRSNLGLTIMAIISSLAFAFMHNDSHIFLYAA IGLLFCWLYHKTGRIQTSMIAHILMNGLVVLPLVM >gi|269838499|gb|ACXB01000012.1| GENE 61 68539 - 69210 597 223 aa, chain - ## HITS:1 COG:no KEGG:LSL_0100 NR:ns ## KEGG: LSL_0100 # Name: not_defined # Def: CRISPR-associated Csn2 family protein # Organism: L.salivarius # Pathway: not_defined # 1 222 1 223 223 155 39.0 8e-37 MKLTYRTHEPVEIKPQAITVLGTNNSTVYTDLVNGMQERNELILAFDENYKELDISKVFD WIGDVGTQDLVIQKYLTKIERVFAEGLVDEQRNQIHDQVNQLFNTVAEQLFMLDLPISVN YDFDLKKLLKYCGVHFDLLSVGNPYGIIEAILKIHEECAINSCVVLTNVAHYLTATQIGE LTQLVSQTNQALLLIEFTEIGNQEAYGNSEFYYIDNDFVDWHQ >gi|269838499|gb|ACXB01000012.1| GENE 62 69207 - 69512 232 101 aa, chain - ## HITS:1 COG:SPy1048 KEGG:ns NR:ns ## COG: SPy1048 COG3512 # Protein_GI_number: 15675043 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 1 101 6 106 113 89 43.0 2e-18 MRLMIMFDLPVETAVQRKQYRQFRKTLINEGFLMIQYSVYVRVCVNKKSATFMENRIKTY LPENGTIQALTLTEKQYNDMHFLVGERVKDVRNTSDRTVIL >gi|269838499|gb|ACXB01000012.1| GENE 63 69490 - 70395 758 301 aa, chain - ## HITS:1 COG:SPy1047 KEGG:ns NR:ns ## COG: SPy1047 COG1518 # Protein_GI_number: 15675042 # Func_class: L Replication, recombination and repair # Function: Uncharacterized protein predicted to be involved in DNA repair # Organism: Streptococcus pyogenes M1 GAS # 2 275 3 277 289 179 36.0 4e-45 MGWRSVIITQHAKLSYSAHAMIVQTNDGINQIPVDDVSLLLISTTQAVITTALISELSKK NVKIVFTDEAREPISEIYGYYPANRTAQLLREQVNWDLQLQQILWTKLVANKIINQINVL NLLDHSTDELVMELEKLELNDLTNREAAVAHKYFPLLFESGFTRRDGSVINAALNYGYSI LLSVVNQEIVANGYVTYLGIHHDSEENQFNLASDLMEPFRPVVDCWVANQKFNQLTPDIK YGLVELLSLELKYNGKKTILRNAITEHVRNCLKYLAGKANSFTIEMELSDEVPNNAINDN V >gi|269838499|gb|ACXB01000012.1| GENE 64 70613 - 70858 162 81 aa, chain - ## HITS:1 COG:no KEGG:LSL_0096 NR:ns ## KEGG: LSL_0096 # Name: not_defined # Def: hypothetical protein # Organism: L.salivarius # Pathway: not_defined # 1 81 65 145 146 67 43.0 1e-10 MPAETKYEGRKVVAHGKREMILEILKGLHANASFGNLKPIGFATPFGQMQAQNGIELSEN TVLIHQSPSGLFEHKIKLSDL >gi|269838499|gb|ACXB01000012.1| GENE 65 71018 - 74707 3416 1229 aa, chain - ## HITS:1 COG:lin2744 KEGG:ns NR:ns ## COG: lin2744 COG3513 # Protein_GI_number: 16801805 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 4 1176 3 1178 1334 523 33.0 1e-148 MGDRKYNLGLDIGTSSIGFAAVDENNQPIRVKGKTAIGVRLFEEGKTAADRRGFRTTRRR LSRRRWRINLLNEIFDAHLAEVDPTFLARLKESNRSNLDPKKSFQGSLLFPERKDYQFYE EYPTIYHLRKALMEKDRKFDIREIYLAVHHIIKYRGNFLNGTPMRSFKVENIELNTLFDQ LNQLYAEIVPDNELAFDLAQVADVKDVLSSTTIYKMDKKKQLVKMMLLPASNKALQSENK KIVTQFVNAILNYKFKLDVLLQVETDADWSLKLNDEGADDKLEEFTGDLDENRLEIIDLL QRLHNWFSLNEITKDGNSLSAAMVEKYENHHHHLGLLKKVIENHPDAKKAKALKETYTAY VGKTDDKTQNQDDFYKAVEKNLDDSPDAKGIKRLIQLDQFMPKQRTGQNGAIPHQLHQQE LDQIIEKQSKYYPFLAEPNPNVKRRKDAPYKLDELIAFKIPYYVGPLVTPEEQAQNKENV FAWMKRKAAGPITPWNFDEKVDRMESANRFIRRMTTKDTYLFGEDVLPAESMIYQKFVVL NELNNLKINGRHLSLKDKQDVYNDLFKQQKTVSIKALQNYYVTKKKAATAPTVGGLADPK KFLSSLSTYIDFKNMFGERVNDPQFQEDLEQIVEWSTIFEDRGIFKAKLQALGWLSEKQI QQLVAKRYKGWGRLSKKLLTGLKNAEGYSILDEMWRSTENFMQIQSRPEFAALIQQANEK QFEGNDPDNVWENIENILGDAYTSPQNKKAIRQVVKVVQDIEKAVGNPPEKIAIEFTREA AANPQRTQSRLRTLEKLYESAEEVVDAGLTAELAEFKENKHVLSDKYYLYFTQLGRDVYT GDTISLDKLNDYDVDHILPQSFIKDDSLDNRVLTIRAVNNGKSDNVPAKMFGKKMGSFWR HLLDNGMISKRKYNNLITDPDNISKYAQKGFINRQLVETSQVIKLTANILNGIYDKDTEI IEVPAKMNSQMRKMFDLVKVREVNDYHHAFDAYLTIFIGNYLYKCYPKLRPYFVYDNFKK FGNKEDIGHKRFNFLGKIEREKKVVAPETGEILWSNVAPNETIKQIKKVYNYKFMIVSRE ITTRRAELFNQTVYPKNYRGKLIPIKEDRPTDLYGGYSGNTDAYLAIVALEDKKKGKYFK VVGIPTRAAAKLEKLKQQDSQQYLQALHEVIAPQFTKSTKKGIKKTEFEIVLDKVHYRQL VQDGPVKMMLGSSTYKYNAKQLVLSEKAL >gi|269838499|gb|ACXB01000012.1| GENE 66 74891 - 75466 524 191 aa, chain + ## HITS:1 COG:no KEGG:PEPE_0418 NR:ns ## KEGG: PEPE_0418 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 186 1 200 208 106 50.0 5e-22 MKKIASIAILAVLPLTLASCGNHSTSNSDTSSNSSKTEKVAKSSSKSSASKDAKSSSADK ATSSSASANSSKDSTNSSSNSNSASSSTSSATDSSSSADNQMSRSDLTKAEKKNGNRPLA DEKIQNEQAAVALLTEKYGNQNWKVAFSSIGKSSPIYFHITSPKHGSYYVYANGDVQSAD GDLSNHQIVNK >gi|269838499|gb|ACXB01000012.1| GENE 67 75691 - 78225 2438 844 aa, chain - ## HITS:1 COG:L102360 KEGG:ns NR:ns ## COG: L102360 COG0308 # Protein_GI_number: 15672287 # Func_class: E Amino acid transport and metabolism # Function: Aminopeptidase N # Organism: Lactococcus lactis # 4 841 3 841 846 851 50.0 0 MANIERFYTKFHPTNYQIKLAISRETKEIKGTTTITGEALSSQIDIHQKDLQIEELRVDG TAGDFTIDQAAEAIHVKLPHTGTVTLEIKYTTKLTDTMMGIYPSYYEVNGETKQLVGTQF ETTFARQAFPCVDEPEAKATFDLAIKFDEHPGEVVLSNMPETKVEDGYHYFARTVKMSTY LIAFAFGDLQSKQTKTKSGVQVGVFATKAHQPQELDFALDIAKRAIEFYEDFYQTPYPLP HSWQLALPDFSAGAMENWGLVTYREAYLLLDPKNTTLRTKQVVATVIAHELAHQWFGDLV TMQWWDDLWLNESFANMMEYVAVDALEPDWQIWELFQNSEAGAALQRDATDGVQSVHVQV NDPAEIDALFDGAIVYAKGARMLVMVRALIGDDALRQGLQKYFASHQYGNATGNDLWQAL GEAANMPIGDIMHTWLDQPGYPVVTAQVENGDLVLEQQQFFIGEGQAQQRQWQIPLNGNY AEVPALLQTKTLNLGNYQDLRDRNQQPFRLNVGNSSHFIVRYDQRLLDDILADWEQLTAI DQLQLLQDLRLLAEGKQISYAEIVPLLPRFAKTDSALVTEMLYRVANDLKKFVAPQSSAE KQLKKFFGELSQAPAQRLGWQAAASETNDDQLMRPMVLKAALYAENPAVTAQAHQLFEEN EAQLPKLPAAIRSLVIRNEVEHFGSPELFARLLKEYQRTSDASYKSDLCQALTATPSLPL IQQLVQQFENAQVIKPQDLRAWFRGVLANPQGQGPAWNWIRDEWQWLEDTVGGDMEFATY ITVIAGIFQTPTRLAEFKAFFEPKLATPGLTREITMDIKVIETRVALIETERDAVQAAVA QAIK >gi|269838499|gb|ACXB01000012.1| GENE 68 78252 - 79661 1470 469 aa, chain - ## HITS:1 COG:L180636 KEGG:ns NR:ns ## COG: L180636 COG0477 # Protein_GI_number: 15673521 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 15 459 22 455 457 270 38.0 3e-72 MEAQNTRHTNPMIVVAVVALMSFMGILTETSMNVTFPALMKEFHVPLNTVQWVTAGYLLM AALVMLTSAYMKRRFTNRQLFTAAAILFSSGDLICGLATNFWVLLAGRLIQAGCVGLCTP LMVNIILDVVPQHKLGTYIGMANLIILVAPALGPTFGGAVVAFNSWRMIFWSTLPVALVL MLLGMKVIKQYAPTDQHYAFDWTRFLLLGMALVSLIVGLNALGEMQLGTFVGLLIVSIGL TILFVKRSHTATKALFSLQVFKQPAFLYSFLPYIMLQFANVGINFLLPNYVQDVFQATSL VGGLILLPGSLFNGFGQPLYGWLLDRFGGKVPLYTGDILFTLALVGLMCWGPQLGVVGIT IAYLIFAIGRSMAFGNSVAYGLKHIDKEFQNDANALYNTGQQVTGAIGTTVLALLMGSVK RPGYTHAQNVSAGSQLAFILLVIFGCVIFVFFHHLVNLKNLPEDKGVDL >gi|269838499|gb|ACXB01000012.1| GENE 69 79854 - 80498 735 214 aa, chain - ## HITS:1 COG:L119013 KEGG:ns NR:ns ## COG: L119013 COG0702 # Protein_GI_number: 15673091 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Predicted nucleoside-diphosphate-sugar epimerases # Organism: Lactococcus lactis # 3 214 2 211 211 150 41.0 1e-36 MAKIFIAGGSGRVATALIKNLVADGNEVVAGARHSENVVEMDHVNAVKLDLHDGVDAIAD LMKGSDAVYFTAGSRGADLLQTDAMGAVKTMQAAEKLGIKRYVMLSSLYTLESERKWHEG GLADLLDYTTAKFFADNYLVHDTDLDYTIVQPTSLTEEAGSGQIYIGKELPQKTNPIPDV ARVLADVLKQPNTVKKVFMMSSGSQAIDQALANV >gi|269838499|gb|ACXB01000012.1| GENE 70 80972 - 81721 610 249 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|270290734|ref|ZP_06196958.1| ## NR: gi|270290734|ref|ZP_06196958.1| predicted protein [Pediococcus acidilactici 7_4] # 1 249 1 249 249 455 100.0 1e-126 MKKSYTLVALLTIPLMLGSCGSQAKTTQSSSVTSKTNKVAKQSQSSSSTTTEKTRKHSTQ NIAVKTRDKEKVAVMLFQMCYPDDDIMQEINFGIWQNDGGNFVGNGGPVCIVSYQIEGNN VKYSRKANKHYPPFKTISLAELEQRYYSTPAQVKQVDDIIVKIHQGQKNPQSFDSTHGKV HLTTDAEAIAYATKKQGDQGWTVHVKNVEGNNTYWSLDNADGKNIGLKSDGTFASDTDGD GSYNVPAGW >gi|269838499|gb|ACXB01000012.1| GENE 71 81786 - 82223 492 145 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|270290735|ref|ZP_06196959.1| ## NR: gi|270290735|ref|ZP_06196959.1| predicted protein [Pediococcus acidilactici 7_4] # 1 145 1 145 145 270 100.0 2e-71 MDKLKETLNGKNGKTIKLVGVIAIVLCVFFAFKTLNNPARDFNGHSYYVVTESEKPESYD DAKNDSEGYVRFHDDGTTSGFLASGDWKIKDHKMYIHFDAEEETGSESEDDDYVDLSAKT KINGHVAFPEKDSSGEISGWWAQAK >gi|269838499|gb|ACXB01000012.1| GENE 72 82333 - 82737 402 134 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|270290736|ref|ZP_06196960.1| ## NR: gi|270290736|ref|ZP_06196960.1| predicted protein [Pediococcus acidilactici 7_4] # 1 134 1 134 134 236 100.0 4e-61 MDSKLKNWVESKNLSKKQIIEILVGIILVIGVIFALMPKGLNGTYELSKNYVVGKDTDTI VFSGKNYKETITTIDTGLFGGSGSKEVKRYSGTYKVTDREVTFSGDFPHSATAKLSKDKR VLTLQDGDQYVKKD >gi|269838499|gb|ACXB01000012.1| GENE 73 82756 - 83778 721 340 aa, chain - ## HITS:1 COG:no KEGG:LAR_1493 NR:ns ## KEGG: LAR_1493 # Name: not_defined # Def: hypothetical protein # Organism: L.reuteri_K # Pathway: not_defined # 175 338 32 195 200 159 53.0 1e-37 MKKTFIFLTTICAMMMLAACGKQSSKSNDTQSQSTQSSVATSKSSSKSSQKPVKKHEDAA MNFEEIKSGNYSSLMGEWNLVKATAKNEDVTSSTQANLKVSKTNLTDGQITMNSAGIKDS NGNHDLIFQEKQGTLVASLTDEDDAAINYLVTFYPKGGSSEYGDGNKNLIVIWTSNNSYT EVFEQNSSNSEQGKKSSFMPKEKTKSSSLWNASKDEKLSSFIDKWSVTMDQDYDKYDGVN DIETSTGTTYPRDLSNVTVNGQSSSIGWSKDGKGDYEYNVVAIYNHDGDVPPLPNHITYF FAYHNGEPVVLVDQSRDGTPDLTETQNAQLNAGFNRIAEN >gi|269838499|gb|ACXB01000012.1| GENE 74 83793 - 84377 528 194 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|270290738|ref|ZP_06196962.1| ## NR: gi|270290738|ref|ZP_06196962.1| predicted protein [Pediococcus acidilactici 7_4] # 1 194 1 194 194 355 100.0 7e-97 MTKEEILDYLMNKRNETAAVANAEQILNEAQNKLQKDKKKFHKLMIAAWVLAAIYGYGEY RGDALICVLFALGLFGFKYLMYIAPDNEKVQNAQAELQKEMNDPIYQNGRKGFPEKFYNY WDALRLWNLVNENRARDLQDAFNILENQHFQESQMQIQAEIKSLQEDIAASSHRAAVNSG IAAASTTISAITRK >gi|269838499|gb|ACXB01000012.1| GENE 75 84414 - 87077 2980 887 aa, chain - ## HITS:1 COG:no KEGG:GALLO_0271 NR:ns ## KEGG: GALLO_0271 # Name: not_defined # Def: putative transposon related peptidoglycan linked protein (LPXTG motif) # Organism: S.gallolyticus # Pathway: not_defined # 27 705 22 705 855 129 27.0 6e-28 MSNKSNLTVLSTTLAATGAVVVGAGTTAHADTVKAPAPEQVQTVKAQNQKLDDDINQAQS DVDNAQKNADQTQNAANNAKQTADDSQNKADAAADHANQAQDDLNDAESNEQAAQDKADH ATDDAINQAQNDVNDQKKQNDQANQDVEDAQNNVNHAQDNVNNAKSNVNQAQNDANQADD AVSKAQDNVNDAQADLDKGNHAQADLDQAQDDLNHAQDNASKAQAGANQADQAQNDAAQK ANDAKQHADDAAKAQNDAQHKADAANKAQDDAQKALDDAKSHQANPNQVLLSREYIDALN AYQNANPNDADYQDILDRLLAATKQEWEINGGYVSNAHDQAIKINSQADLDKYINELNQY AQELINNVRDQFGTENVQISNGSEDLGQAIGNAYTKNNWDIANGHDFNTNNQIARDHGLT QLSDQDIAIVAGKVLGESWNMSLDDFKKALYDAMQAFLFNDEEWDHATSIAGIRYGAQGH NVWMGIGWSQLTPTDTPVAGQTLINAIFNFVYDYTIQDESKFDTTPIKSDVPSQSTIDQL ENDLKTKQADANAANQALATAKANNAKAQAALNAANAALNAAKANQAKAHANLTQAQAAV KDAKAAVTAAQHALDEANANHAAKQKALDDAKAKLANAKANQAQKHAILNDANAKLAKAN NALADAQAKLAAAQAVLAAGQQALADKEAKLNDLKNADKALADAKAAVEAAQKAYDDAKT AANQAQIEADGDQVVYEHLQALADKAVKALADAKARLAQLEHQRDINDAIDGVDNGSKGS DESHDVNTNHNGSNTSNGINSSDTSNTWDDPTVLNNSAMSNDSSKIVTPAMVAARAMSNR SRSQVIKASILPQTGETNNNEGSMIGLALLSLLGAFGLAKTSRRRMH >gi|269838499|gb|ACXB01000012.1| GENE 76 87325 - 87630 352 101 aa, chain + ## HITS:1 COG:L80045 KEGG:ns NR:ns ## COG: L80045 COG1396 # Protein_GI_number: 15674195 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Lactococcus lactis # 1 97 1 97 102 80 43.0 6e-16 MNITSFNTRLKSARKLKHFTQLDLANRLDVSKGTVSAYEQGLSYPSLETLVKICNILDTS ADYLLGISDDLTFKMGGLTDEQTESILQFISLIEKANETLQ >gi|269838499|gb|ACXB01000012.1| GENE 77 87837 - 89390 1486 517 aa, chain - ## HITS:1 COG:SP1445_2 KEGG:ns NR:ns ## COG: SP1445_2 COG0519 # Protein_GI_number: 15901295 # Func_class: F Nucleotide transport and metabolism # Function: GMP synthase, PP-ATPase domain/subunit # Organism: Streptococcus pneumoniae TIGR4 # 202 517 1 316 316 540 82.0 1e-153 MANTDLSNFDKIIVLDFGSQYNQLITRRIREFGVYSELLSHKITAEEIKQINPKGIIFSG GPNSVYDDDAFRVDPEIYQLGIPILGICYGMQLMAYNLGGRVESADNREYGHADINVTDD QAALFKGLPATQTVWMSHGDLVREVPAGFKTVATSANCPIASMADDDRKFYGVQFHAEVR NTQYGNDILRHFAFDVCQAQANWSMNDFIDMQVEKIREEVGDRKVLLGLSGGVDSSVVGV LLNKAIGDQLVCIFVDHGLLRKGEAKQVMDSLEGKFGLNIIKVDAQDRFLSKLAGVTDPE QKRKIIGNEFIEVFNDEAQKLKGIDFLAQGTLYTDVIESGTDTAQTIKSHHNVGGLPEDM HFELIEPLRTLFKDEARDLGEKLGMPEDLVWRQPFPGPGLGIRVLGEITEDKLQIVRDSD LILREEIKNAGLDRDIWQYFTVLPGIRSVGVMGDGRTYDYTVGIRAVNSIDGMTADFARI PWDVLQKISVRIVNEVDHVNRVVYDITSKPPATVEWE >gi|269838499|gb|ACXB01000012.1| GENE 78 89463 - 91379 1499 638 aa, chain - ## HITS:1 COG:L63697 KEGG:ns NR:ns ## COG: L63697 COG2217 # Protein_GI_number: 15673984 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Lactococcus lactis # 2 625 1 621 625 515 45.0 1e-146 MIKMQRWFTRFANPLLGVAALLTAVGWLLHHSGSFPEAAGMAYGIATLVAGMPILLKAIG ALRARMASIELLVSIAVLGALIIGELEEAAMVTFLFGLGNYLERRTLKQTHRALANLTEM QPTQALLVSEGQTRTVAIDDVEVGDQLLVRIGDQVPVDGRVVTGTAAVDEAAITGEARVV NKTPTDQVYTGTIVENGQMVVEAQKVGEETTFGKIIELVEEAQDNQAPVSRFIDQFARYY TPLVLVLALLTQLVTQDFRLAITILVLACPGALVIGTPVSNVAGIGRGAQSGILIKGGQV IDQLAKVRTILMDKTGTITTGKPTVQSFYQYSQQDWLAVAAQLEKQTNHPLAVAVVEFYE QRTGQPVQNHDIAITTVKGIGVTATWHGHQVKLGSPRILEPSAQKLSNKQTADLQKLREN GQSVILMIVDGALVLTMGLSDQVRPGVASALKQLRQTGVTNQWMVTGDQLKVAQSVAHTV GITQVKAGQLPNEKAQFLKELQASGQPVLFVGDGINDSPAIAQAAVGIAMGSGTDVAIET SDVVLINPDFKNVVFARQIAQATLRNMMENVGIAVGTVALLMLGVSLGWVNMASGMFFHE VSILVVIFNAMRLLKLKRPAWENFSTKTGGESPSSETI >gi|269838499|gb|ACXB01000012.1| GENE 79 91372 - 91917 531 181 aa, chain - ## HITS:1 COG:lin0942 KEGG:ns NR:ns ## COG: lin0942 COG0783 # Protein_GI_number: 16800011 # Func_class: P Inorganic ion transport and metabolism # Function: DNA-binding ferritin-like protein (oxidative damage protectant) # Organism: Listeria innocua # 30 172 14 156 156 60 26.0 2e-09 MAKSIEERYLAEQKQAEIDHHQPTAGAMADHVLANLRVLTNKLVQAAWYVKGPSYFADRE YLLQLQATLNHDIVQLGDQLRAVGEKPASVTAEFSEYSMLTEDPRIKYYSTEAILAGLVA DCQTSLMFIQRAVALANQESKFPLANYLIELNGQFDRASQKLQARLGKEPREGLEEDDED D >gi|269838499|gb|ACXB01000012.1| GENE 80 91917 - 92147 337 76 aa, chain - ## HITS:1 COG:L134080 KEGG:ns NR:ns ## COG: L134080 COG2608 # Protein_GI_number: 15674047 # Func_class: P Inorganic ion transport and metabolism # Function: Copper chaperone # Organism: Lactococcus lactis # 1 74 1 75 75 67 53.0 7e-12 MTKVILQLDTLTCPSCMTKIQGALTKLAGVQNVKVLFNASKVKALVDDRLDSADLKRTVE ELGYQVKSVKTKEVIE >gi|269838499|gb|ACXB01000012.1| GENE 81 92270 - 92947 666 225 aa, chain + ## HITS:1 COG:L0239 KEGG:ns NR:ns ## COG: L0239 COG0664 # Protein_GI_number: 15673985 # Func_class: T Signal transduction mechanisms # Function: cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases # Organism: Lactococcus lactis # 5 221 3 217 222 124 32.0 1e-28 MATLVNAHHCVPLVPIFKNLTPAQSQQIEAIVRHRHVPAQQILYQAGDAVDALTIVAKGQ VKVVRLAENGKEHLLYLLQSGDINGEAALFNQLEHHSTATTLTPTTVCTIARADFQQLLT RNPQIAVNVMNTLGNRLLSLEAQATKTNTESVAERLADYLVETSASLQANPFTLPLKNKD LATLLGTTPETISRYLKRWESHHLVKKLPGHQLQILDAAGLTLIE >gi|269838499|gb|ACXB01000012.1| GENE 82 93098 - 94483 1232 461 aa, chain - ## HITS:1 COG:HI1154 KEGG:ns NR:ns ## COG: HI1154 COG1823 # Protein_GI_number: 16273079 # Func_class: R General function prediction only # Function: Predicted Na+/dicarboxylate symporter # Organism: Haemophilus influenzae # 5 442 1 436 440 338 47.0 1e-92 MNDLMIWATVGIAGVILLVLALLQRKNVSFNKLVLIGLVLGLSFGAITQAIFGSTSKVVA TAVDWIGIVGNGYISLLQMLVIPLIVISLISAFTKLGDTKNLGKIARNVLTVLLTTTAIA AFIGVITVIAFNLQGASFVKGTASKDNLAFLQQHQHALSELTVPQKIVSFLPQNIFEDLA GTRATSTIAVVIFSLIVGLAYIWLKEHYPNDALAFERGTDILDKLISRMVRLVINLTPYG IFSLMAKTIAVNSIKTIVSLAYFIVAVYVALLLVLVVHTVILLLTHTNPIEYYKKVWPTL IFAFTSRNSAGTLPMNVEVQTKQLGINKAIADFSASLGLSIGQNGCAGIYPAMIASITAP VVGINIVSVKFILTLIIIVTISSFGVAGSGGGATFAALIVLGTLNLPVGIMGIVLAIDPI IDMGRTLVNVNDSILAGLVTAKRSDMFNEDVFNGKEKIEQA >gi|269838499|gb|ACXB01000012.1| GENE 83 95210 - 96127 889 305 aa, chain - ## HITS:1 COG:L66222 KEGG:ns NR:ns ## COG: L66222 COG1072 # Protein_GI_number: 15673426 # Func_class: H Coenzyme transport and metabolism # Function: Panthothenate kinase # Organism: Lactococcus lactis # 6 304 4 304 306 308 53.0 1e-83 MQAQGYFTFDRTAWQNLSNRAELPLTQQQLADIKALNDRISLEDVQDVYVPLVRLLQKKY ADFEKWNRDKLDFLQIPVKKTPFIVGISGSVAVGKSTTARLLQVLLSNWFSDLKTQLITT DGFLYPNAELKRRHLMSRKGFPESYNMKELIHFLNAVKTGQKQIKVPKYSHQVYDVIKDE YDVIDQPDILIVEGINVLQLPANETIYVSDFFDWSIYVDAEADLIEKWFLERFGVLLDTA FHDPSNYYYQYAQMPREEAFAYAKKIWRDIDLKNLKEYILPTRFRADMILHKTEGHVMDN ILVRV >gi|269838499|gb|ACXB01000012.1| GENE 84 96163 - 96867 810 234 aa, chain - ## HITS:1 COG:SA2394 KEGG:ns NR:ns ## COG: SA2394 COG3527 # Protein_GI_number: 15928187 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Alpha-acetolactate decarboxylase # Organism: Staphylococcus aureus N315 # 4 234 5 234 234 164 38.0 1e-40 MAKLFQHGTLAMLVDGLFGGTLTAEALLEHGDFGIGTAEGLDGEVIILDGVAYQALADGS VRILEPEAMLPFADVNQADFEGHVVLPEIEMAEVDATLAKELSYQNTFVAIKISGLFSRV QTRVVKGQQRPYPTLSETAAKQQIFDAQNIKGTVVGYYSPKLFHGASVAGMHLHFIDDQH QFGGHLLDFRADQVKLSWQILDGIDLSLPIKDSEFMKHQASDVRDIQQSIAESE >gi|269838499|gb|ACXB01000012.1| GENE 85 96896 - 98572 1432 558 aa, chain - ## HITS:1 COG:lin2114 KEGG:ns NR:ns ## COG: lin2114 COG0028 # Protein_GI_number: 16801180 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] # Organism: Listeria innocua # 7 558 16 563 564 698 62.0 0 MIQSSYTGADSILDSLINHDVEYIFGIPGAKIDLLFEQLEHSNRARKPRLIITRHEQNAA FMAAAVGRITGKPGVVLTTSGPGVGNLATGLVTATAEGDPVLAIGGQVPRNDLLRLTHQS MRNADLFEPITKYSVEVQEPENISEVLANAYRAAESSKQGASFVSFPQDVVNAPVSTRPI QPLKKPILGPASPDEIKKLAEAIKNAQLPVLLLGMRASSPEVTQAVRQLVKESDLPVVET FQGAGIISHDLEDHFYGRVGLFRNQPGDKLLKHSDLVITVGYDAIEYEPRNWNAEGDGKI LVIDDSPSEIDHNFEPEKELVGDIAQTINLLTPHLAGYQISNDGEQYLEQLREQQNQQDL PPEAESDTQRIHPLSLISALQYRVDDEMTVSVDVGSFYIWMARHFRSYQPRHLLFSNGMQ TLGVALPWAISAALLRPGHKSVSVSGDGGFLFSAQELETAVRENLDIVHIIWNDGHYDMV KFQEELKYGKAAGVNFGPVDFVKLAESYGAKGLRVDGPADLGKKLDEAFQTKGPVVVDIP VDYRDNVKLGQSLLPDQL >gi|269838499|gb|ACXB01000012.1| GENE 86 98710 - 101007 2105 765 aa, chain - ## HITS:1 COG:BS_yvgS KEGG:ns NR:ns ## COG: BS_yvgS COG3973 # Protein_GI_number: 16080398 # Func_class: R General function prediction only # Function: Superfamily I DNA and RNA helicases # Organism: Bacillus subtilis # 3 762 5 771 774 517 38.0 1e-146 MADEIFKYEEKHLAEVLDKVDIAMDKAQKDAKNAENDRGAIQDNFYNDVRINTSSYSGMM DTAISIRQQQQLLEERENSWQHATKRIKTLKQMQKRPYFARIDFHEEGEKNDETIYIGLG SFSDTPDHFLIYDWRAPISSVYYDGKMGHVEYATPDGQQSVDLKLKRQFTIEDGKLISVY DTDETIGDQMLLNALGSQSDVKMKSIVSTIQREQNQIIRNTSADLLFVQGAAGSGKTAAI LQRVAFLLYRYRGKLTAGQVIMFSPNQLFNDYVDQVLPELGEQNMVQMTYYQFARRRIPN LDVENLQQRFDKQLTDAERKIDQFKGSLQFFKALTRYAQHLGKGGMRFRNIMFKEKPFAS REKIKEIYYSFNDTYSLSNRIDGTRETLIRMLNQKVGSELRTKWVEEAVQNLSQEEIHEL FKNKPREFKDNDEEFKFLARQIVVKELKPVRNAIMRNRFLSINAQYVHMLRTLPKWYKLE KIGVTEAQWQAHVEKLVENLKNRQLTMVDTSAYLYLYDLITGKRGDRSMRYVFIDEIQDY NAFQLAYLRYNFPKAKFTLLGDLNQSIYANETSKTLLAELSTMFDPEKTKVVQLAKSYRS TQPITDFTKEILEEGEAIEAFNRQGELPRVAVTQDQATMLKTVRAQLERDRQDHETTAII GRSLAECEQITEQLQAAGEKVTLIRTENQRLVEGTLVVPSFLAKGLEFDSVIVWDANAEN YQSHRDEQLLYTICSRAMHRLLVVAMGQLSPLIAKIPKSLYQTIN >gi|269838499|gb|ACXB01000012.1| GENE 87 101147 - 101794 636 215 aa, chain + ## HITS:1 COG:lin0907 KEGG:ns NR:ns ## COG: lin0907 COG0406 # Protein_GI_number: 16799979 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Listeria innocua # 2 215 3 216 224 141 39.0 1e-33 MKQLKLYFVRHGQTIFNKYNRMQGWSDSPLTEKGYADAHQAGVRLSDTKFDAVYASDTTR AMNTARAILAENKHTTAEIQAKTEFREEFYGYFEGNDSAQTWFEVLMPISGKRSFHEFLE ERPIAETKDAIKAADPFHDAENNAEFWERINRGFNDLLATANDGDQILIVSHGTTIRSIA AKADPELDITWGPKNGSITRFTLDEDGIHLIEYNN >gi|269838499|gb|ACXB01000012.1| GENE 88 101840 - 103471 1361 543 aa, chain + ## HITS:1 COG:ycaM KEGG:ns NR:ns ## COG: ycaM COG0531 # Protein_GI_number: 16128866 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Escherichia coli K12 # 7 473 68 534 540 317 36.0 6e-86 MENSPLDAKKRYISWPVVALMDFVTVIGFDDLIYNFHNQGLAIVSTWVLMILLFVWPYEM MVGQLGGTFNEDGGGLASWVRATNGDLAGYIVAFFYWIAGLPYVVDVANSVVVSISWLVK GNGDLQSYMPTIAFALFTAVVFLVFIWFQHFFRNRSLEILSTLGGGAMFVMTILFVVMTV AALMHGRHIATQPFNARAFIPKIDGHFLSTFGLLIFAINGAELAAPYVKEMKDGKRDFPK AMMMLLLMTIFLTVFGSFSLAVFFNAHHLPYDLKMNGSYYAFQALGKEFGIGDTLMYIFA VSQALYMFAQLAVILDASTRIFLSDVAMKYLPKSLGKLNSDGLPINGYWLTTGIVSLVLF LSNWLPSINDMFNWLLNINGIVSPFVTSFVFFAFMRIRQKSKEFHSDYVFIKNDVLAWLV GAWCFVITIVFSLLGVRPTDATPGTALYDKELALNIIIPVIFIALSALLPYMAWVERNHL KKTSRASYPFAILTFIVGAYLVIKGHYSADVWSGVIAWGIIVVATLAVYFLFFNIFRKSF KKA >gi|269838499|gb|ACXB01000012.1| GENE 89 103476 - 104156 427 226 aa, chain + ## HITS:1 COG:lin0907 KEGG:ns NR:ns ## COG: lin0907 COG0406 # Protein_GI_number: 16799979 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Listeria innocua # 2 204 3 203 224 120 35.0 3e-27 MKTVNYYFVRHGQTLFNRYRHLQGWSDSPLTEKGVHDAQQAGDFLADVDFAHAYCSDTTR AIKTARFINQRNHHPLPEKTIEPIAAFREQFFGYFEGANSVETEFKLYQQHSTIEPTLNA MTALHGIKAAIDVWKNVDPFHDAESYTEITTRLQQGLDYTFDQANDGDNVLVVSHGTLIR ILTSMFNPEIDVSHSPRNGSVTKLKLRDQDGVVEYFGRVSPAPGNS >gi|269838499|gb|ACXB01000012.1| GENE 90 104402 - 105694 544 430 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149914878|ref|ZP_01903407.1| 30S ribosomal protein S2 [Roseobacter sp. AzwK-3b] # 25 408 30 411 425 214 36 2e-54 MNEEINEEPIIIAGLELPGVNLDYAMAELKSLASANHMRVMDQLTQKLERPNAATYFGKG KIEELTQVAAAREVETLVVNDELTPSQLSNLEKETQLRVIDRTGLILEIFANRARSKEAR LQVELAKLQYQLPRLRTSATQRLDQQTAGNTGGGFTNRGAGETKLELNRRTIRNRINHIN QELKEMSTSANVQRQRRDKKDIPSVALVGYTNTGKSTTMNGLISMYGRNEDKQVFEKDML FATLDTSVRKLTFPDQKELILSDTVGFVSNLPHQLVKAFRSTLSEAAKADLLVQVVDVSD PHYREMMQTTADTLQEIGVTDVPMIYAFNKADRAGIAYPTLDGTELTYSAKQLQSLEMLT SLIKKQVFKNYVRADFLIPFDEGQVVNFLNGNADVKKTSYTDQGTKITAELKDSDYQRLA QYVVQPEDQI >gi|269838499|gb|ACXB01000012.1| GENE 91 105785 - 106438 761 217 aa, chain - ## HITS:1 COG:BS_glnP KEGG:ns NR:ns ## COG: BS_glnP COG0765 # Protein_GI_number: 16079799 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Bacillus subtilis # 4 213 3 214 218 195 54.0 6e-50 MHAFMEAYSAVNLAFLLKGLWITIEVSVISIIFSYVLGGILGLIRYLNVRYLSALVGVVI DVIRNLPLLLMFFFVYFGLPNLGIRLGILPSSILALTVFESAMIAEIIRGGIVSIDKGQM EGARANGLSYWQAMRYIILPQAQVRMIPALVSQFISLIKDTSLATIIMLPEMMYHAQIIY GQNTNYIIPMFVALAGMYFVVCYTLSIISRKLEQKLA >gi|269838499|gb|ACXB01000012.1| GENE 92 106438 - 107088 547 216 aa, chain - ## HITS:1 COG:BS_glnM KEGG:ns NR:ns ## COG: BS_glnM COG0765 # Protein_GI_number: 16079798 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Bacillus subtilis # 2 213 3 214 216 193 53.0 2e-49 MINILTNHSAELFSGLGQTLLCSLIALFFSLVIGSLFAIMEVLPSRLARTIGRIYVEVVR NIPLLVVTMFFYIVIPRYIPAVNGFTAGTIGLTIYTSAFIAETVRAGIQSVSGGQMEAAR SNGMTFSQAMRYIVLPQAFKIVIPPLGNQFINLVKNSSVLAFVAGFDLMYVGNDIASTTF DTINSYLVVGVLYLIITMPLSYYMRYLEKRTNRGVA >gi|269838499|gb|ACXB01000012.1| GENE 93 107085 - 107918 811 277 aa, chain - ## HITS:1 COG:BS_glnH KEGG:ns NR:ns ## COG: BS_glnH COG0834 # Protein_GI_number: 16079797 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Bacillus subtilis # 1 269 1 272 273 248 47.0 1e-65 MRRRFKMLFLGLTAVLFLGILGGCTKQEAKQRDAWQTAQQTKTLTWGVKADTKLFGLMDV KDSQIKGFDIDIAKALTKQMLGKDAQAEFVQVTSQTRIPLLKNGNLDAVIATMTITKDRQ KVVDFSDSYFDAGQSLLVPKDSKIHSVRDLNHPGTKVIGVVGANSVSNVKKFAPKAQVIQ LQDYAQALTALKSGQGAALTTDNGILFGMAVDNPQFKVVGKAFTKEPYGIAINQNQPALK KHLNQALEEIIANGEYNRLIKKWFGDIPGFNYREVER >gi|269838499|gb|ACXB01000012.1| GENE 94 107931 - 108671 507 246 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 3 243 1 242 245 199 42 4e-50 MSMIEFHNVEKYYGKFHALTDVNLTIEKGETVVLIGPSGSGKSTLIRTVNGLESIDGGQL IVNGFDLANRQTNINKIRREVGMVFQHFNLYDNKSVLENIMLAPRVVLKRPEEQNRQLAM ELLDRVGLAEKADSMPAMLSGGQKQRIAIARSLAMQPKCILFDEPTSALDPEMIDDVLNV MKQIARDSAMTMVVVTHEMGFAREVGDRVIFMDGGRILEDDRKEEFFDGQPSNERARQFL SKIIKH >gi|269838499|gb|ACXB01000012.1| GENE 95 108814 - 109629 818 271 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0388 NR:ns ## KEGG: PEPE_0388 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 269 12 281 284 357 67.0 2e-97 MGMISVKSKLKNQIYTITAFVGNWYLLYIGIRFIQNGAYTRGLLLLAIFLIFLYFSIMNI YYYFTNKQAPFDISPILEKYIGGTPEEVREKEEFRRRLTRVERQSRQVASPGGVFDQKAL LPATIVSSARQQKNIEQIAEKMIQSGMVFMDYGGRTDEELRAEMPAQQTETYAIGDLGVA IPYAEVQLVAGKPTVVAGMNQMEAVPVGEITKVGLSSYQAAKAENHLYLANAFLIGGEKK VRGRSGMIVENEPYRLKINIAYKRRQTSLSK >gi|269838499|gb|ACXB01000012.1| GENE 96 109676 - 110188 564 170 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|270290760|ref|ZP_06196984.1| ## NR: gi|270290760|ref|ZP_06196984.1| predicted protein [Pediococcus acidilactici 7_4] # 1 170 12 181 181 130 100.0 4e-29 MAYRTPPFLTPIAIVTMIIALSATNVIVNKATNTSEGAPVRSSKVVESSEPEKKPSSDDE HSKDKSEESSSSSEESSKPSEDTSSSGETSQPTDDQTQDNSSSKTTKDSTGNDKASSGAN DEDQTTTDSSGDASSGSGAAASQGQASSQQDTNQQAAVQKATTTDTNTGQ >gi|269838499|gb|ACXB01000012.1| GENE 97 110190 - 110300 58 36 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLTLSDKILKLLQTWGSFAYLSAFFWYANVWKYGGR >gi|269838499|gb|ACXB01000012.1| GENE 98 110315 - 110761 407 148 aa, chain - ## HITS:1 COG:BS_zur KEGG:ns NR:ns ## COG: BS_zur COG0735 # Protein_GI_number: 16079565 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+/Zn2+ uptake regulation proteins # Organism: Bacillus subtilis # 9 142 6 135 145 111 41.0 4e-25 MDKSPIAIAVKILKANGYKITRQRQSLLELLAQSGDRYLELTELDRLMRLQFPKMSHNTI YRNVKEFAALGIVEENQNENDGKTEVKLDCNEQHAHHHHFICNQCGKVQELKMCPLSFFS DQLPGAEITGHHFELYGICAECAKKVHA >gi|269838499|gb|ACXB01000012.1| GENE 99 110822 - 111391 440 189 aa, chain - ## HITS:1 COG:Cj1177c KEGG:ns NR:ns ## COG: Cj1177c COG0194 # Protein_GI_number: 15792501 # Func_class: F Nucleotide transport and metabolism # Function: Guanylate kinase # Organism: Campylobacter jejuni # 4 186 7 191 207 68 26.0 7e-12 MNKIIVIAGPTGSGKTTVADYLNQRYGVVKVITHTTRPQRTNEKQGVDYYFETADSFDQN HYLEQVQYAHYRYGSSYEGLTQAWQKNPIACIVLDTAGAITYQQKLGDQVEILFLRVQKE ATLKQRLLKRGDSMDSITKRINSPEYRRDMELPSELQGKATVIDNDDWQATKQKLDAFYL QVKKQTLDV >gi|269838499|gb|ACXB01000012.1| GENE 100 111512 - 111688 310 58 aa, chain + ## HITS:1 COG:no KEGG:PEPE_0384 NR:ns ## KEGG: PEPE_0384 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 58 1 58 58 90 91.0 2e-17 MQFKKYSTAWYSIALDTEKQVFIANDKAQPEFQATGVTIEEAIQNLQSLEENSFSKLA >gi|269838499|gb|ACXB01000012.1| GENE 101 111790 - 112206 500 138 aa, chain - ## HITS:1 COG:CT771 KEGG:ns NR:ns ## COG: CT771 COG0494 # Protein_GI_number: 15605504 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Chlamydia trachomatis # 32 134 39 144 150 58 33.0 2e-09 MALELDGGAVVYQMRAKEPYYLLLKSATSGFWGFPKGHLENTESALEAAEREIREETGII ATVDDRFYDVLNYRVGENDKKVTLFTAKVPEDTVVRLQKEEISMAAWLDYAAARKRLTYL NLKQALDNADQYIRKAEQ >gi|269838499|gb|ACXB01000012.1| GENE 102 112360 - 113748 1436 462 aa, chain + ## HITS:1 COG:lin0648 KEGG:ns NR:ns ## COG: lin0648 COG0531 # Protein_GI_number: 16799723 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Listeria innocua # 5 460 2 460 463 486 56.0 1e-137 MQLKHNIFRKESLANYLKVDSQFEKTLGAKDLLALGIGAVIGTGIFILPGTVAALKAGPS ITLSFVIAALVCALAGMCYAEFAASIPVAGSAYSYGTIIYGELLGWLLGWALILEYVLAV AAVSTGWSAYFGSLIKGFGGHLPAAIAGPFDPQHGTYINLFAVIIVLLIGFLLNRGFKSS IRINNLMVFVKIAIILIFIGVGIFYVKPSNWQPYFPFGIHGTLAGASTVFFAYLGFDTVS ASAAEVKNPAKNMPIGIIGTLIVATIFYVAVAVVLTGMVPYNELNVANPVSFALQLVHQN WIAGLLSVGALAGMTTMMISMIYGSSRLVYATGRDGLLPRLLGQLEGPHRSPKNALIVVT IFIALLGGFVPLDQLTNLVNMGTLFAFGLISLGVIPLRRRTDIPGNGFKVPGYPVIPIIS VIACVYLISTLSLETWIGSAIWFAIGLIIYFSYGMRHSKLAE Prediction of potential genes in microbial genomes Time: Fri May 27 06:42:25 2011 Seq name: gi|269838498|gb|ACXB01000013.1| Pediococcus acidilactici 7_4 cont1.13, whole genome shotgun sequence Length of sequence - 174286 bp Number of predicted genes - 168, with homology - 165 Number of transcription units - 85, operones - 41 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 1/0.135 - CDS 24 - 1835 1566 ## COG1001 Adenine deaminase 2 1 Op 2 . - CDS 1819 - 3171 1489 ## COG2252 Permeases - Prom 3207 - 3266 5.3 + Prom 3240 - 3299 6.2 3 2 Op 1 . + CDS 3344 - 4357 1103 ## COG1816 Adenosine deaminase + Prom 4359 - 4418 2.6 4 2 Op 2 . + CDS 4441 - 6897 2014 ## PEPE_0380 x-prolyl-dipeptidyl aminopeptidase (EC:3.4.14.11) + Term 6985 - 7018 0.7 5 3 Tu 1 . - CDS 6842 - 7624 507 ## COG0340 Biotin-(acetyl-CoA carboxylase) ligase - Prom 7644 - 7703 4.2 + Prom 7620 - 7679 8.5 6 4 Op 1 . + CDS 7809 - 8723 838 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) + Term 8736 - 8775 3.0 + Prom 8801 - 8860 5.4 7 4 Op 2 . + CDS 8889 - 9740 987 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase + Term 9767 - 9811 8.4 - Term 9750 - 9805 16.6 8 5 Tu 1 . - CDS 9820 - 11367 1423 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains - Prom 11430 - 11489 7.1 + Prom 11340 - 11399 5.0 9 6 Tu 1 . + CDS 11486 - 11860 203 ## PROTEIN SUPPORTED gi|154175150|ref|YP_001408716.1| 30S ribosomal protein S15 + Term 12027 - 12067 8.1 - Term 12014 - 12055 9.1 10 7 Op 1 . - CDS 12081 - 12863 834 ## COG0024 Methionine aminopeptidase 11 7 Op 2 . - CDS 12904 - 13770 772 ## COG1307 Uncharacterized protein conserved in bacteria 12 7 Op 3 . - CDS 13751 - 14080 266 ## COG0526 Thiol-disulfide isomerase and thioredoxins 13 7 Op 4 . - CDS 14121 - 14855 683 ## COG0861 Membrane protein TerC, possibly involved in tellurium resistance - Prom 14882 - 14941 5.8 + Prom 14839 - 14898 8.1 14 8 Tu 1 . + CDS 14965 - 15903 717 ## COG0598 Mg2+ and Co2+ transporters + Term 16041 - 16083 4.0 - Term 16240 - 16288 11.7 15 9 Op 1 3/0.027 - CDS 16302 - 17066 742 ## COG5438 Predicted multitransmembrane protein 16 9 Op 2 . - CDS 17059 - 18168 903 ## COG5438 Predicted multitransmembrane protein 17 9 Op 3 . - CDS 18168 - 18599 577 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - Prom 18629 - 18688 7.2 + Prom 18639 - 18698 8.0 18 10 Tu 1 . + CDS 18787 - 20943 2007 ## COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily + Term 20959 - 21006 10.1 - Term 21270 - 21320 13.0 19 11 Tu 1 . - CDS 21364 - 22347 194 ## PROTEIN SUPPORTED gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 - Prom 22482 - 22541 7.8 + Prom 22408 - 22467 6.2 20 12 Op 1 . + CDS 22508 - 23464 1136 ## COG1957 Inosine-uridine nucleoside N-ribohydrolase + Term 23486 - 23519 -0.3 + Prom 23470 - 23529 5.6 21 12 Op 2 . + CDS 23556 - 25532 1494 ## COG0025 NhaP-type Na+/H+ and K+/H+ antiporters 22 12 Op 3 . + CDS 25496 - 25669 81 ## + Term 25829 - 25863 -0.5 - Term 25524 - 25577 4.1 23 13 Tu 1 . - CDS 25652 - 26584 748 ## COG1073 Hydrolases of the alpha/beta superfamily - Prom 26604 - 26663 4.0 + Prom 26563 - 26622 5.1 24 14 Op 1 . + CDS 26759 - 27178 332 ## PEPE_0362 XRE family transcriptional regulator 25 14 Op 2 . + CDS 27182 - 28033 616 ## PEPE_0361 SAM-dependent methyltransferase + Term 28056 - 28099 10.2 + Prom 28286 - 28345 5.5 26 15 Tu 1 . + CDS 28372 - 29016 609 ## COG0586 Uncharacterized membrane-associated protein 27 16 Op 1 . - CDS 29051 - 29281 275 ## 28 16 Op 2 . - CDS 29268 - 29942 697 ## COG1376 Uncharacterized protein conserved in bacteria 29 16 Op 3 . - CDS 29956 - 30420 592 ## PEPE_0357 hypothetical protein - Prom 30446 - 30505 5.6 + Prom 30410 - 30469 6.3 30 17 Tu 1 . + CDS 30546 - 31409 958 ## COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases + Term 31434 - 31479 5.2 - Term 31418 - 31470 12.2 31 18 Tu 1 . - CDS 31482 - 32372 788 ## COG0583 Transcriptional regulator - Prom 32406 - 32465 6.5 + Prom 32348 - 32407 6.8 32 19 Tu 1 . + CDS 32490 - 33227 904 ## COG1811 Uncharacterized membrane protein, possible Na+ channel or pump + Term 33270 - 33325 12.1 - Term 33258 - 33313 12.1 33 20 Tu 1 . - CDS 33392 - 34264 1047 ## COG1940 Transcriptional regulator/sugar kinase - Prom 34449 - 34508 7.9 + Prom 34402 - 34461 4.4 34 21 Op 1 . + CDS 34488 - 34949 435 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins + Term 34967 - 35000 2.2 35 21 Op 2 . + CDS 35015 - 35929 474 ## PROTEIN SUPPORTED gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit 36 21 Op 3 . + CDS 36092 - 36547 349 ## COG1051 ADP-ribose pyrophosphatase + Term 36597 - 36662 8.2 - Term 36583 - 36649 10.0 37 22 Op 1 . - CDS 36669 - 39032 2263 ## COG3957 Phosphoketolase - Prom 39076 - 39135 10.6 - Term 39146 - 39184 -0.2 38 22 Op 2 . - CDS 39270 - 39992 704 ## COG2188 Transcriptional regulators - Prom 40018 - 40077 6.4 + Prom 39946 - 40005 5.3 39 23 Tu 1 . + CDS 40101 - 40604 547 ## COG2606 Uncharacterized conserved protein + Term 40607 - 40665 11.2 - Term 40444 - 40493 0.5 40 24 Op 1 . - CDS 40657 - 41832 679 ## COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities 41 24 Op 2 3/0.027 - CDS 41873 - 42250 496 ## COG2190 Phosphotransferase system IIA components 42 24 Op 3 3/0.027 - CDS 42247 - 43914 1495 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific - Prom 43943 - 44002 2.8 43 24 Op 4 . - CDS 44004 - 44753 624 ## COG1737 Transcriptional regulators - Prom 44836 - 44895 7.3 - Term 45158 - 45204 9.3 44 25 Tu 1 . - CDS 45246 - 45776 491 ## PEPE_0350 BS_ykrK family protein - Prom 45799 - 45858 7.3 + Prom 45839 - 45898 6.5 45 26 Tu 1 . + CDS 45924 - 46250 516 ## PEPE_0349 hypothetical protein + Term 46306 - 46352 13.4 - Term 46350 - 46387 -0.9 46 27 Tu 1 . - CDS 46426 - 47364 1143 ## COG4989 Predicted oxidoreductase - Prom 47540 - 47599 8.3 + Prom 47497 - 47556 5.4 47 28 Tu 1 . + CDS 47587 - 48972 1266 ## COG1253 Hemolysins and related proteins containing CBS domains + Term 48989 - 49020 2.1 - Term 48976 - 49007 2.1 48 29 Op 1 4/0.027 - CDS 49033 - 50643 1345 ## COG3559 Putative exporter of polyketide antibiotics 49 29 Op 2 . - CDS 50633 - 51565 777 ## COG1131 ABC-type multidrug transport system, ATPase component - Prom 51599 - 51658 4.3 - Term 51844 - 51892 11.7 50 30 Tu 1 . - CDS 51934 - 52758 490 ## COG0561 Predicted hydrolases of the HAD superfamily - Prom 52868 - 52927 6.9 + Prom 52801 - 52860 6.8 51 31 Op 1 . + CDS 52913 - 53386 536 ## COG1780 Protein involved in ribonucleotide reduction 52 31 Op 2 . + CDS 53401 - 54192 728 ## COG2365 Protein tyrosine/serine phosphatase + Term 54275 - 54323 3.9 + Prom 54214 - 54273 5.4 53 32 Op 1 . + CDS 54475 - 55254 568 ## COG2365 Protein tyrosine/serine phosphatase 54 32 Op 2 . + CDS 55334 - 55795 502 ## COG4405 Uncharacterized protein conserved in bacteria - Term 55727 - 55763 -0.1 55 33 Op 1 4/0.027 - CDS 55868 - 56770 738 ## COG1295 Predicted membrane protein 56 33 Op 2 . - CDS 56783 - 58219 997 ## COG0477 Permeases of the major facilitator superfamily - Prom 58244 - 58303 5.9 + Prom 58224 - 58283 5.2 57 34 Tu 1 . + CDS 58376 - 58834 366 ## COG0735 Fe2+/Zn2+ uptake regulation proteins + Term 58874 - 58927 7.0 - Term 58855 - 58919 12.8 58 35 Op 1 21/0.000 - CDS 58986 - 59957 1228 ## COG0280 Phosphotransacetylase 59 35 Op 2 1/0.135 - CDS 59961 - 61160 1161 ## COG0282 Acetate kinase - Term 61410 - 61451 8.3 60 36 Tu 1 . - CDS 61554 - 62267 799 ## COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase - Prom 62296 - 62355 10.4 + Prom 62261 - 62320 8.6 61 37 Tu 1 . + CDS 62486 - 62716 393 ## PEPE_0330 hypothetical protein + Term 62727 - 62759 1.5 - Term 63100 - 63146 6.6 62 38 Tu 1 . - CDS 63222 - 63518 339 ## COG0346 Lactoylglutathione lyase and related lyases - Prom 63693 - 63752 5.3 + Prom 63583 - 63642 7.6 63 39 Op 1 . + CDS 63750 - 65189 1229 ## COG0477 Permeases of the major facilitator superfamily 64 39 Op 2 . + CDS 65283 - 65690 574 ## PEPE_0325 hypothetical protein + Term 65756 - 65802 12.3 - Term 65737 - 65796 13.7 65 40 Op 1 . - CDS 65798 - 67180 1236 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit 66 40 Op 2 . - CDS 67194 - 68105 796 ## COG0167 Dihydroorotate dehydrogenase 67 40 Op 3 24/0.000 - CDS 68117 - 71290 2758 ## COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ) 68 40 Op 4 7/0.027 - CDS 71293 - 72378 805 ## COG0505 Carbamoylphosphate synthase small subunit 69 40 Op 5 15/0.000 - CDS 72375 - 73667 1152 ## COG0044 Dihydroorotase and related cyclic amidohydrolases 70 40 Op 6 . - CDS 73672 - 74592 861 ## COG0540 Aspartate carbamoyltransferase, catalytic chain - Prom 74614 - 74673 4.8 - Term 74610 - 74657 5.4 71 41 Tu 1 . - CDS 74715 - 75368 584 ## COG0461 Orotate phosphoribosyltransferase - Prom 75531 - 75590 6.4 72 42 Op 1 . - CDS 75796 - 76620 595 ## COG0561 Predicted hydrolases of the HAD superfamily 73 42 Op 2 . - CDS 76642 - 76971 502 ## PEPE_0310 hypothetical protein - Prom 77000 - 77059 6.8 + Prom 76952 - 77011 6.0 74 43 Tu 1 . + CDS 77055 - 77996 172 ## PROTEIN SUPPORTED gi|163794676|ref|ZP_02188646.1| 50S ribosomal protein L13 + Term 78038 - 78085 12.7 - Term 78373 - 78415 -1.0 75 44 Tu 1 . - CDS 78491 - 79516 1000 ## COG2855 Predicted membrane protein - Prom 79614 - 79673 8.5 + Prom 79590 - 79649 7.8 76 45 Tu 1 . + CDS 79677 - 80531 689 ## COG0583 Transcriptional regulator + Prom 80572 - 80631 5.5 77 46 Op 1 . + CDS 80670 - 80855 291 ## PEPE_0306 hypothetical protein 78 46 Op 2 . + CDS 80967 - 81488 544 ## PEPE_0305 hypothetical protein + Term 81508 - 81559 8.0 - Term 81496 - 81547 11.0 79 47 Tu 1 . - CDS 81567 - 82325 734 ## COG0328 Ribonuclease HI - Prom 82427 - 82486 6.2 - Term 82509 - 82555 3.3 80 48 Tu 1 . - CDS 82646 - 83953 1452 ## COG2252 Permeases - Prom 83995 - 84054 8.1 - Term 84115 - 84161 9.1 81 49 Tu 1 . - CDS 84225 - 85232 424 ## COG2502 Asparagine synthetase A - Term 85684 - 85729 11.2 82 50 Op 1 . - CDS 85780 - 87693 2194 ## COG3590 Predicted metalloendopeptidase 83 50 Op 2 . - CDS 87745 - 88716 1106 ## COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D - Prom 88809 - 88868 8.1 + Prom 88744 - 88803 8.3 84 51 Tu 1 . + CDS 88825 - 89583 641 ## COG1226 Kef-type K+ transport systems, predicted NAD-binding component + Term 89584 - 89629 6.0 - Term 89571 - 89618 8.0 85 52 Tu 1 . - CDS 89638 - 90291 897 ## COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) - Prom 90336 - 90395 7.5 + Prom 90264 - 90323 4.9 86 53 Op 1 . + CDS 90463 - 90885 495 ## PEPE_0298 hypothetical protein + Term 90954 - 90989 0.4 + Prom 90898 - 90957 6.4 87 53 Op 2 . + CDS 91117 - 91455 327 ## PEPE_0297 hypothetical protein + Term 91496 - 91554 13.6 88 54 Tu 1 . - CDS 92435 - 93523 641 ## PEPE_0296 hypothetical protein - Prom 93591 - 93650 4.9 - Term 93639 - 93676 3.0 89 55 Tu 1 . - CDS 93714 - 94691 1053 ## COG0462 Phosphoribosylpyrophosphate synthetase - Prom 94847 - 94906 6.5 + Prom 94866 - 94925 9.3 90 56 Tu 1 . + CDS 94987 - 96489 1245 ## COG0554 Glycerol kinase 91 57 Op 1 . - CDS 96555 - 97244 684 ## LSA1836 putative metal ion ABC transporter, membrane-spanning subunit 92 57 Op 2 34/0.000 - CDS 97237 - 98883 1548 ## COG1122 ABC-type cobalt transport system, ATPase component 93 57 Op 3 . - CDS 98865 - 99788 441 ## COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters - Prom 99944 - 100003 5.2 + Prom 99925 - 99984 7.4 94 58 Tu 1 . + CDS 100057 - 101163 883 ## COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain + Term 101184 - 101241 -0.9 95 59 Tu 1 . - CDS 101266 - 102459 991 ## COG3007 Uncharacterized paraquat-inducible protein B - Prom 102497 - 102556 6.6 - Term 102559 - 102598 4.5 96 60 Op 1 . - CDS 102645 - 103433 284 ## COG2365 Protein tyrosine/serine phosphatase 97 60 Op 2 . - CDS 103460 - 104050 275 ## COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family 98 60 Op 3 . - CDS 104122 - 104484 188 ## COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family 99 60 Op 4 . - CDS 104498 - 104842 515 ## COG4810 Ethanolamine utilization protein 100 60 Op 5 . - CDS 104858 - 106045 1053 ## COG0282 Acetate kinase 101 60 Op 6 6/0.027 - CDS 106069 - 107190 971 ## COG1454 Alcohol dehydrogenase, class IV 102 60 Op 7 2/0.027 - CDS 107194 - 108627 1826 ## PROTEIN SUPPORTED gi|148544941|ref|YP_001272311.1| 50S ribosomal protein L29P 103 60 Op 8 . - CDS 108629 - 109108 554 ## COG3193 Uncharacterized protein, possibly involved in utilization of glycolate and propanediol - Prom 109140 - 109199 3.0 104 61 Op 1 . - CDS 109218 - 109607 220 ## COG2096 Uncharacterized conserved protein 105 61 Op 2 2/0.027 - CDS 109625 - 109795 232 ## COG2096 Uncharacterized conserved protein 106 61 Op 3 . - CDS 109810 - 110076 285 ## COG4576 Carbon dioxide concentrating mechanism/carboxysome shell protein 107 61 Op 4 . - CDS 110061 - 110567 471 ## LVIS_1607 propanediol utilization protein 108 61 Op 5 2/0.027 - CDS 110590 - 111216 540 ## COG4869 Propanediol utilization protein 109 61 Op 6 5/0.027 - CDS 111247 - 111522 442 ## COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein 110 61 Op 7 . - CDS 111550 - 112023 494 ## COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein 111 61 Op 8 . - CDS 112024 - 112380 339 ## LVIS_1611 diol dehydratase medium subunit 112 61 Op 9 . - CDS 112381 - 114216 2034 ## LVIS_1612 propanediol utilization ATPase 113 61 Op 10 1/0.135 - CDS 114228 - 114758 480 ## COG4910 Propanediol dehydratase, small subunit 114 61 Op 11 . - CDS 114770 - 115498 681 ## COG4909 Propanediol dehydratase, large subunit 115 61 Op 12 2/0.027 - CDS 115517 - 117193 1605 ## COG4909 Propanediol dehydratase, large subunit 116 61 Op 13 4/0.027 - CDS 117215 - 117937 660 ## COG4816 Ethanolamine utilization protein 117 61 Op 14 . - CDS 117994 - 118272 510 ## COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein - Prom 118433 - 118492 5.6 - Term 118533 - 118579 12.2 118 62 Op 1 . - CDS 118591 - 119046 534 ## COG4917 Ethanolamine utilization protein 119 62 Op 2 . - CDS 119060 - 119518 483 ## LVIS_1981 hypothetical protein 120 62 Op 3 . - CDS 119535 - 120626 1134 ## LVIS_1982 hypothetical protein - Prom 120681 - 120740 4.4 - Term 120805 - 120845 8.1 121 63 Op 1 . - CDS 120871 - 121845 646 ## COG1609 Transcriptional regulators 122 63 Op 2 . - CDS 121873 - 123996 1696 ## COG3345 Alpha-galactosidase 123 63 Op 3 . - CDS 124013 - 125365 755 ## COG2211 Na+/melibiose symporter and related transporters - Prom 125399 - 125458 4.6 - Term 125600 - 125644 8.2 124 64 Op 1 . - CDS 125658 - 127064 1434 ## COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) 125 64 Op 2 . - CDS 127073 - 127909 798 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins - Prom 128028 - 128087 7.6 - Term 128150 - 128200 11.3 126 65 Op 1 42/0.000 - CDS 128242 - 129030 890 ## COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components 127 65 Op 2 25/0.000 - CDS 129023 - 129703 178 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 128 65 Op 3 . - CDS 129703 - 130596 719 ## COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin - Prom 130632 - 130691 7.1 + Prom 130575 - 130634 3.6 129 66 Tu 1 . + CDS 130738 - 131325 643 ## PROTEIN SUPPORTED gi|148988990|ref|ZP_01820390.1| hypothetical protein CGSSp6BS73_02415 + Term 131426 - 131458 3.2 - Term 131405 - 131454 9.9 130 67 Op 1 . - CDS 131466 - 133007 1540 ## COG1288 Predicted membrane protein - Prom 133066 - 133125 2.1 131 67 Op 2 1/0.135 - CDS 133127 - 133837 700 ## COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases 132 67 Op 3 7/0.027 - CDS 133906 - 135333 1432 ## COG0531 Amino acid transporters - Prom 135502 - 135561 6.7 - Term 136129 - 136170 6.5 133 68 Op 1 6/0.027 - CDS 136197 - 136973 258 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 134 68 Op 2 1/0.135 - CDS 137007 - 138350 1347 ## COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases - Prom 138506 - 138565 4.0 - Term 138510 - 138563 3.2 135 69 Op 1 1/0.135 - CDS 138594 - 139355 767 ## COG1737 Transcriptional regulators 136 69 Op 2 2/0.027 - CDS 139416 - 140870 1217 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase 137 69 Op 3 8/0.027 - CDS 140883 - 141206 469 ## COG1447 Phosphotransferase system cellobiose-specific component IIA - Term 141220 - 141256 -1.0 138 69 Op 4 . - CDS 141280 - 141591 418 ## COG1440 Phosphotransferase system cellobiose-specific component IIB - Prom 141651 - 141710 11.6 + Prom 141602 - 141661 7.8 139 70 Tu 1 . + CDS 141747 - 142442 439 ## COG2188 Transcriptional regulators + Term 142664 - 142707 5.1 + Prom 142565 - 142624 3.7 140 71 Op 1 9/0.027 + CDS 142760 - 143755 907 ## COG2984 ABC-type uncharacterized transport system, periplasmic component 141 71 Op 2 13/0.027 + CDS 143752 - 144672 959 ## COG4120 ABC-type uncharacterized transport system, permease component 142 71 Op 3 . + CDS 144665 - 145423 193 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 + Prom 145454 - 145513 6.8 143 72 Tu 1 . + CDS 145557 - 146432 608 ## COG4814 Uncharacterized protein with an alpha/beta hydrolase fold + Term 146517 - 146580 10.5 - Term 146620 - 146666 9.5 144 73 Tu 1 . - CDS 146732 - 148168 1388 ## COG0477 Permeases of the major facilitator superfamily - Prom 148357 - 148416 5.3 - Term 148312 - 148352 5.1 145 74 Op 1 3/0.027 - CDS 148423 - 148875 546 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins 146 74 Op 2 . - CDS 148890 - 149369 513 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins - Prom 149391 - 149450 3.9 147 75 Op 1 . - CDS 149508 - 150020 361 ## COG1309 Transcriptional regulator 148 75 Op 2 2/0.027 - CDS 150030 - 150881 717 ## COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase - Prom 150908 - 150967 9.7 - Term 151085 - 151126 8.1 149 76 Tu 1 . - CDS 151229 - 151534 283 ## COG4466 Uncharacterized protein conserved in bacteria - Prom 151580 - 151639 8.0 150 77 Op 1 7/0.027 - CDS 151661 - 152554 899 ## COG0030 Dimethyladenosine transferase (rRNA methylation) 151 77 Op 2 3/0.027 - CDS 152551 - 153120 521 ## COG1658 Small primase-like proteins (Toprim domain) 152 77 Op 3 8/0.027 - CDS 153095 - 153877 781 ## COG0084 Mg-dependent DNase - Prom 154092 - 154151 2.7 - Term 154062 - 154110 10.3 153 78 Tu 1 . - CDS 154158 - 156182 1858 ## COG0143 Methionyl-tRNA synthetase - Prom 156214 - 156273 3.4 154 79 Op 1 . - CDS 156472 - 157110 327 ## COG1801 Uncharacterized conserved protein - Term 157123 - 157176 4.1 155 79 Op 2 . - CDS 157189 - 157854 581 ## PEPE_0264 hypothetical protein + Prom 157634 - 157693 4.1 156 80 Op 1 . + CDS 157742 - 157975 146 ## 157 80 Op 2 . + CDS 157997 - 158188 221 ## PEPE_0262 putative stress-responsive transcriptional regulator + Term 158209 - 158247 5.3 - Term 158290 - 158332 3.5 158 81 Op 1 . - CDS 158352 - 159308 902 ## PEPE_0259 hypothetical protein 159 81 Op 2 . - CDS 159301 - 160527 1245 ## COG1257 Hydroxymethylglutaryl-CoA reductase 160 81 Op 3 . - CDS 160524 - 161462 885 ## COG0248 Exopolyphosphatase - Prom 161493 - 161552 7.0 - Term 161920 - 161970 13.7 161 82 Tu 1 . - CDS 162010 - 163032 1088 ## COG0180 Tryptophanyl-tRNA synthetase - Prom 163056 - 163115 8.6 162 83 Tu 1 . + CDS 163380 - 165665 1894 ## COG3973 Superfamily I DNA and RNA helicases + Term 165679 - 165727 7.0 - Term 165915 - 165960 8.2 163 84 Op 1 . - CDS 166037 - 167197 286 ## PROTEIN SUPPORTED gi|229845962|ref|ZP_04466074.1| 30S ribosomal protein S2 164 84 Op 2 1/0.135 - CDS 167227 - 168564 1276 ## COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes 165 84 Op 3 12/0.027 - CDS 168588 - 169553 790 ## COG1125 ABC-type proline/glycine betaine transport systems, ATPase components 166 84 Op 4 . - CDS 169550 - 171082 1272 ## COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) - Prom 171104 - 171163 3.3 - Term 171119 - 171167 10.1 167 85 Op 1 6/0.027 - CDS 171174 - 172409 1190 ## COG0402 Cytosine deaminase and related metal-dependent hydrolases 168 85 Op 2 . - CDS 172399 - 173763 1450 ## COG1457 Purine-cytosine permease and related proteins - TRNA 173933 - 174006 72.9 # Thr GGT 0 0 Predicted protein(s) >gi|269838498|gb|ACXB01000013.1| GENE 1 24 - 1835 1566 603 aa, chain - ## HITS:1 COG:SMa1718 KEGG:ns NR:ns ## COG: SMa1718 COG1001 # Protein_GI_number: 16263397 # Func_class: F Nucleotide transport and metabolism # Function: Adenine deaminase # Organism: Sinorhizobium meliloti # 24 598 11 586 600 555 49.0 1e-158 MYLKLKQTGADMDTTTELEKYIDAGAAEIPADLVIENGTLINVDTAEYYRADVAIYKGRI VAVDKDVSDYVGEHTRHVDATDQYLAPGLIDGHIHVECSKMSMTRFARAVVPKGTTSIVS GLDEYISVIGLAGLDEIFAEIDQLPLKVFWGVPYKTPYTIPQSTVAYNVNAQDHQKFQPQ ERSYGVWETVREAVQTKDKDTLSAVLTAQKLHKPIFGCSPMAKGKDLNQFLMTRVRVDHE SYSHEEFLEKARKGIHTIIRESSVTKFLAENVKAITEGAPGVARHTSFCTDDITARDILE KGHVDHLVRLAIKAGISPMTAIQMATLNSAEAYHIDDQVGSIAPGKEADILLIDQPGTFN IETVISKGVVVVERQAEQLEFVPPKRSVEITNSVKCAEITAESFKYQVDQPTGMATVRSI KSVGPFVRKSRKVDLKIKDGCILPDAKRDVALVSVVERYGINHQHSRGFISGWGLQSGAI ATSASPDDNNIVVAGMDEADMALAVNELVKHGGGQVVVNKGEVLALLELPVAGIVTDLQP NELARKEVELKNAANQLGCKLPDPLFYLSFLPITAIPDLAITDGGNVDYTKLEYFDPILD LTK >gi|269838498|gb|ACXB01000013.1| GENE 2 1819 - 3171 1489 450 aa, chain - ## HITS:1 COG:BH0608 KEGG:ns NR:ns ## COG: BH0608 COG2252 # Protein_GI_number: 15613171 # Func_class: R General function prediction only # Function: Permeases # Organism: Bacillus halodurans # 15 445 1 433 434 383 54.0 1e-106 MQKANDQILADDNMLEKVFHLSGHGTTIKREMLAGLTTFVSMAYILFVNPSILGAAGMDK GAVFTATALSAILGSALMAFLANYPIAVAPGLGDNAFFTFSVVLGMGISWQKAMAGVFVA SVLFTILSFLKVREVVINAIPKDLKLAMAAGIGIFIAFVGLQGGGLVTASKTSLVEIGSL TVPTTWLTIFGIFVIAILMAKRVPGSIFIGLVSTALLGLITGLIKMPASIISLAPSMKPT FGVGVYHLSSMVDPQMWAVVLIFLLVAFFDTAGTLIGLAQQAGIMKDNKMPRIGQALVAD SVSMLAGSVMGTTPTAAYVESSAGIAVGGKTGLTSLTVAVLFGFSMLFSPLLTVVTNQVT APALIVVGVLMASALREIEWDKFEIAMPAFLTVIGMPLTYNISYGIAFGFLTYPILMVAA GRRKEINYIMWAMLVIFIVLLYILNIVPKA >gi|269838498|gb|ACXB01000013.1| GENE 3 3344 - 4357 1103 337 aa, chain + ## HITS:1 COG:SPBC1683.02 KEGG:ns NR:ns ## COG: SPBC1683.02 COG1816 # Protein_GI_number: 19111850 # Func_class: F Nucleotide transport and metabolism # Function: Adenosine deaminase # Organism: Schizosaccharomyces pombe # 6 336 5 337 339 340 50.0 2e-93 MDKITKEFIQGLPKAELHLHIEGTLEPQLKLKLAKRNHVDIGQNTVEEVQKTYQYDDLAS FLAVYYPAMNVLQTEADFYDLAFDYLKRAAQNNVRHVEIFFDPQAHTSRGISFATVINGL YRATVDARALNIDAGLIMCFLRDFSKESARKTLAEALKYQDKIIGIGLDSDEHNNPPLKF ARQFEDAAAAGLHRTVHCDIDQKDSIEHIRQALEIMEVERIDHGTNIVEDPDLVDLVAKR GIGLTSCPLSNSFVSPEMKGQEVLELLSKNVKVSIHSDDPAYFGGYISDNYTAIASQFKL TKPQIIQLARNSFESSWISDQQKEIYLNELNNYVNSN >gi|269838498|gb|ACXB01000013.1| GENE 4 4441 - 6897 2014 818 aa, chain + ## HITS:1 COG:no KEGG:PEPE_0380 NR:ns ## KEGG: PEPE_0380 # Name: not_defined # Def: x-prolyl-dipeptidyl aminopeptidase (EC:3.4.14.11) # Organism: P.pentosaceus # Pathway: not_defined # 1 812 1 812 812 1269 80.0 0 MKNNQFGRIDVDQDEEITELKAIHFIDQDLIADPKAQFEDFLRRSFLISNQESTFQQKLG NLLATPNQTAADFFASAEPLTLDIFYLIALQLLQFESGIDFSVIDPQAATAKINLPRLAL DALETSADVAHAWYSILTAHTKNGETYLDHLTQQGYFTPFYATTTAPLFFNGKAQAVFDP HQIIREVVYVEAPLDTDHDGKRDLLKAEILRPAQTEQGYKAPVLYTASPYNQGTNDHWGE QVTHNVDVPLTEKTVNHLTREDVTAKPYDPELPPERQVKGQAEHACEHFAREQPYTLNNY FLTRGFAVVYAAGIGTRDSEGLRDTGSVAETISTTAIIEWLAGNRRAFTNKTDNIEIKAN WSNHKIAMTGRSYLGTLATAAATTGVEGLETIISEAAISSWYDYYRDGGLVAAPDTFQGE DMDVLAAEVFSRQKDLGDALKVRSKFDQVLNRINHDQDRQSGNYSRYWDSRNYLNQAKNI KADLILVHGLNDWNVKPRNVANLWNAVRDLPINKKIILHQGQHIYINNFRSIDFTDMMNL WLSYKLFGVENNAPEVLPNVIIQDNVEPETWHTYPDWQDADDEVREFTLQAKTLVDAALP TKNEAASFKDVLDPEVFEMYKNNLTQWHTDLLNTEHATNGKNQMRDNRLIFKSAQLDHDW YIDGAAEVKVNVAVNKPFGMLSFQLVDFGDARRLNVTPSLIQPRSLSGSYDWRTDDLREF TQQKSVTPWKMISKGHINLQNRTNNYRVDKVVPNQFYDVTLQLQPTFYHLPAGHQLGLVI YATDFETTIRGNQDLQYSLQLNQSHLKVRLANVISDRS >gi|269838498|gb|ACXB01000013.1| GENE 5 6842 - 7624 507 260 aa, chain - ## HITS:1 COG:L0191_2 KEGG:ns NR:ns ## COG: L0191_2 COG0340 # Protein_GI_number: 15673762 # Func_class: H Coenzyme transport and metabolism # Function: Biotin-(acetyl-CoA carboxylase) ligase # Organism: Lactococcus lactis # 16 250 1 239 242 88 28.0 1e-17 MQINVARLQNEFPDEKIEYFDQVGSTNDVAFTRVQQNPGIAGMVVANQQTAGRGTNQRQF YSPTSGIYCSIYLPLAPATVLHPGRVTANVGVIVAEAVHRVFGQPLGIKWVNDLYLHDQK VGGILCEAVSNDDNQLIGLVLGMGLNILTTTFPQTMLRTGGPIVEQANATQVTDLLIKIN QAIQKKRQTLASDAINPKYLDLSILQDQWVIIDQVASRLTGKVTGVTPENELLVNDGHQL RTVTNGRILRWQAEPLNDFD >gi|269838498|gb|ACXB01000013.1| GENE 6 7809 - 8723 838 304 aa, chain + ## HITS:1 COG:Ta0830 KEGG:ns NR:ns ## COG: Ta0830 COG0596 # Protein_GI_number: 16081888 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Thermoplasma acidophilum # 29 294 31 289 293 142 32.0 1e-33 MKQGTTILTLDNGYHLWSHTDGTNDSIHLLALHGGPGGNHEYWENFHDELLKQGLDVQVH YYDQLGSWYSDQPDYSDPEIAEKYLSYDYFLDEVEEVRQKLGIDHFYLIGQSWGGALTMM YALKYGEHLKGAIISSMVDNIDEYLEHQDAIRDEALAPEDAQFMRDCEKSGDWDNERYQK LVDVLNAGYVDRKQPVAIRHLVPTMATPVYNAFQGDNEFVVTGKLKEWDVRDQIHNIKVP TLLTFGEHETMPLKSAQRMAEVIPNAKLVTTPDGGHHHMIDNAPVYFKHLADYLREVEAG TFNK >gi|269838498|gb|ACXB01000013.1| GENE 7 8889 - 9740 987 283 aa, chain + ## HITS:1 COG:L66233 KEGG:ns NR:ns ## COG: L66233 COG0656 # Protein_GI_number: 15672250 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Lactococcus lactis # 4 283 3 281 281 375 64.0 1e-104 MNKLTDTYTLNNGVKIPVIGFGTWQSKDGEEAYQAVKAALDAGYRHIDTAAAYGNEESVG KAIKDSGVAREDLFVTSKLWNEDHGYEATKKALDLSLQKLGLDYLDLYLIHWPNPVKFRD EWQQKNAESWRAMEEALEAGKVRAIGVSNFRPHHLDELLKTAKVTPAVNQIFLNPSDTED EVVAYNKEHGILSEAYSPLGTGKIFSIPELKEIAEKYHKSVAQVVIRWSLQHGFLPLPKS VHAERIQQNTEVFDFELSADDMKTIDGFHGQAGAPTDPDTATF >gi|269838498|gb|ACXB01000013.1| GENE 8 9820 - 11367 1423 515 aa, chain - ## HITS:1 COG:CAC3339 KEGG:ns NR:ns ## COG: CAC3339 COG0488 # Protein_GI_number: 15896582 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Clostridium acetobutylicum # 1 510 1 512 518 410 43.0 1e-114 MSLLSVEHLSHGFADKELYEDASFELNKEDHMGIVGQNGAGKSTLIKILTGETLPDKGRI VWQNKVTYGYLDQYADIPQNDTLYEFLTTAYADLFKQRDLMEKYYAEYAENLDDKLLEKA GRIQENLDANNFYEIDTEINRVMTGLGLDDIGKDHIVSEMSGGQRSKIILAKLLLQDPDV LILDEPTNYLDTAHINWLADYLNGFEGAFMVVSHDYEFLQKVTNCICDVSFNKITKYRGD FQSAMRQKEARQEAQLKAYEKQQVVIEKAENFIRKNKAGQRSTMAKSREKMLNRMDKIDP PSENLKGHFDFPYLDTGSQNAVAVNKLAVGYGKKQLLEPVTFSMVAGEKVAFSGFNGAGK STLIKSILGLIPALGGEAHFSPSAKVNYFSQELVWDNPDLTPLQTIQEKYPTMLPKTIRT KLAKCGINAADTQKPMHQLSGGEQTKVKLALMELIESNFLIMDEPTNHLDDETKQALSEA LQRFKGNLIVVSHESSFYNSWIDKVINVEKLRLDR >gi|269838498|gb|ACXB01000013.1| GENE 9 11486 - 11860 203 124 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|154175150|ref|YP_001408716.1| 30S ribosomal protein S15 [Campylobacter curvus 525.92] # 1 124 1 129 130 82 37 9e-15 MNIREIDHITLTVADVARSERFYHEVFDMPILTDAPYPGVRAGKQRIYFTTKETKPAIAP AQPTSGSIALSLVAKNPMNEIVNHLKSYFVEIVDEPKQRQGTHGKVQSLLIKDPDGNVVE VANY >gi|269838498|gb|ACXB01000013.1| GENE 10 12081 - 12863 834 260 aa, chain - ## HITS:1 COG:lin1821 KEGG:ns NR:ns ## COG: lin1821 COG0024 # Protein_GI_number: 16800888 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionine aminopeptidase # Organism: Listeria innocua # 1 251 1 248 252 315 61.0 7e-86 MITLKSEREIEGMRKAGAVLAGMHIGLRDVIKPGISSWDIEKFALRYLDEHGAVPEEKGF EGYEYATCVSVNNEVCHGFPRKDLILKEGDLVKVDTVVSVDGYMADSCWAFAVGEVSDEV KKLMEVTKKALYLGIDQAVEGNRIGDIGHAIQTYVEDEMGYGDVREFVGHGIQPTMHEDP MVPGYGEAGHGPRLRNGMTITIEPMVNTGSWQCDTSAPDGWTVTTMDGSLSCQYEHTLVV TPDGPKILTSQDPVGDAKYL >gi|269838498|gb|ACXB01000013.1| GENE 11 12904 - 13770 772 288 aa, chain - ## HITS:1 COG:BH3627 KEGG:ns NR:ns ## COG: BH3627 COG1307 # Protein_GI_number: 15616189 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 6 284 2 279 283 136 29.0 4e-32 MKMNQSKTAIVIDSSANLDPAIARKYNITVVNQPIMFGKHVYHENVDIDADEFYRMLKLE KYHPTTSQIPIKEMQRVFAELAAKGYKAALCIGLSGGLSGFINSLSASVPVIKELQVYPY DSGSILAGQSNAAILAANLLDSGVDIHEVLRQLRKYRSQTEVYLAVNNVKELQISGNIAS RTSLVSSFFGMRPILTINRQGRLEMVGKERKIKNAMEAISEIFAQQVVDYRHLTVTVVDA DDVDRSIQWQSELKVQYPGLHVESCPIGPYVGTYTGSKAIGLIWSPKL >gi|269838498|gb|ACXB01000013.1| GENE 12 13751 - 14080 266 109 aa, chain - ## HITS:1 COG:BH3098 KEGG:ns NR:ns ## COG: BH3098 COG0526 # Protein_GI_number: 15615660 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Bacillus halodurans # 5 103 6 104 104 117 51.0 6e-27 MAATVTSENLAEVTKDGLTIVDFWAPWCGPCKMMEPILENLEQSYGDQVHFGKLNVDHNQ ELAQSFKVMSIPSLVLFKDGKAIEKVTGVYPEAKLAKYIEKKINENESK >gi|269838498|gb|ACXB01000013.1| GENE 13 14121 - 14855 683 244 aa, chain - ## HITS:1 COG:CAC1415 KEGG:ns NR:ns ## COG: CAC1415 COG0861 # Protein_GI_number: 15894694 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane protein TerC, possibly involved in tellurium resistance # Organism: Clostridium acetobutylicum # 4 241 7 238 246 181 45.0 1e-45 MNILTNLYGPFFDLNNWKTVLESSSDWLVILSLVMIECLLSVDNAVVLATQTQVLGDKVE REKSLFYGLWGAYLFRFLVIGIGTYLIHLWEIKIIGALYLAYLVFRYFDKRKRGRRTRKL VKPRGKISLFWRVVIQIEFMDIVFSIDSVLASLAISSNPVIVLLGGLIGILAMRGIAEVI MKLMHRIPELETMAYVLIGIIALKLFLSIPAIDIEINSGIFAGIVVLAFLITIAIHYLRK SVRK >gi|269838498|gb|ACXB01000013.1| GENE 14 14965 - 15903 717 312 aa, chain + ## HITS:1 COG:lin0568 KEGG:ns NR:ns ## COG: lin0568 COG0598 # Protein_GI_number: 16799643 # Func_class: P Inorganic ion transport and metabolism # Function: Mg2+ and Co2+ transporters # Organism: Listeria innocua # 11 296 12 288 301 132 32.0 6e-31 MLKVSKTVNDFSLIQVSNPSTLELQTLVKTYHATSETLSYAIDPNERARAEIDEENNSFL IIFHALSSLYNAGIQTEPAAFLFLPKALVIFTHDSTHYVNKIMDRNLKTLLRKTLNKPVQ LNSSLMVNAVFNTIYELTMRFNDAVSRINYDRQAIQDKFKTRLNHSGIQSMLQLETSLIY LLTSLKSNTSLLNSMMRLPNLNLTKAQRNRLEEIIIESEQSQEMAQLSSDIIEQVSKSYS DILDNNLNNTMKFLTILSIVLAVPNIVFGFFGQNVKLPLADQGWSWLVTLEISSLLILIV YLIVNWSNFFKK >gi|269838498|gb|ACXB01000013.1| GENE 15 16302 - 17066 742 254 aa, chain - ## HITS:1 COG:L17781 KEGG:ns NR:ns ## COG: L17781 COG5438 # Protein_GI_number: 15672790 # Func_class: S Function unknown # Function: Predicted multitransmembrane protein # Organism: Lactococcus lactis # 24 244 23 243 253 152 41.0 4e-37 MVSATLILMIILAVLMVIVGGATGLRAFLSIILNFAVLFVNIALISWGFPALTVTIISSL VILAITIFMGSDDDQITQNAFYSSVLVLVVLIGLILIIHPHLMIQGFGNENNEDLEGMSL LIGIKFSDVITSTMIISSLGAVAEASIAVSTGIQELIETTPDLDLTKLFSHGYEIGKEII GTALNTLFFGFFGSFLGLFIWYVKLNYRFSEFFNNKIFAAEFSMILIGFIGVISAVPLTA WVTQLRVRKNSGSL >gi|269838498|gb|ACXB01000013.1| GENE 16 17059 - 18168 903 369 aa, chain - ## HITS:1 COG:SA0428 KEGG:ns NR:ns ## COG: SA0428 COG5438 # Protein_GI_number: 15926147 # Func_class: S Function unknown # Function: Predicted multitransmembrane protein # Organism: Staphylococcus aureus N315 # 7 359 15 362 370 200 31.0 4e-51 MRWKSQIGLILVVILTGLLVVGLVQHDDVIYRTPLGRIERVTNLKKVPQTDNFNNHDYRA KQRLQIKILNGKRRGQTVSVKNEYSGSQATDLKYRPGQTVLLHFNGTGQRVKGATILDLK RDVAITILVVIAVGLLILMRRTGIHAIVSVLLNMVLFFIAVEIDVQESGYAVLAIFSVVA VLFSAITLALVLGWNKKMMVSLLTTLAGTFSAMLIGGLVFSLTGNGGLHFETMEYVTQNP EPLFLAETVLGSLGAVMDESTDIIVSLAKLRKENPQISMKQLWISGRNIGKTIMGPLLNV LFMIFMADTFSMMVLYLRNGNSWQYAFEMNMQLGFVQSLISGIGIVLTVPIASWLTGVFF KNKGVPTNG >gi|269838498|gb|ACXB01000013.1| GENE 17 18168 - 18599 577 143 aa, chain - ## HITS:1 COG:SA0906 KEGG:ns NR:ns ## COG: SA0906 COG0454 # Protein_GI_number: 15926640 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Staphylococcus aureus N315 # 16 143 13 140 144 82 35.0 2e-16 MEAKMVKGATGPIYMDALALRRQVFVEEQGIDPALEFGADEDFYTYFVGYEDDTPVVTAR TRRTEPNTWTVQRVATTKESRRHGLAQELFEYIETQGRQAGIEKIRLHAQATAEPFYFAL NYERTGGPEMEAGLLHYWMEKKL >gi|269838498|gb|ACXB01000013.1| GENE 18 18787 - 20943 2007 718 aa, chain + ## HITS:1 COG:SPy0807 KEGG:ns NR:ns ## COG: SPy0807 COG1368 # Protein_GI_number: 15674849 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily # Organism: Streptococcus pyogenes M1 GAS # 8 692 25 708 736 612 49.0 1e-175 MKSLKSRIDTRFGFFILISVLFWLKTLFAYFTDISLGVSGIFQWIILLINPIATTLLIFG LALYVRPKRAFYWTAMLLDLANTVLLYLNVIYFREFSDFMTVNTMLGYSKVNQGLSASSM SLTNFHDIFYWLDLLVIFLLLVLKKIKMDPHPLPKKFGFQITSVGILFFAFNLMLAEMDR PQLITRTFDRSYVVKYMGIDAFTAYDGVQLERNIKMRSEAKKSELTSIEKYVKQHYAKPS DVSFGKAKGKNVIIIHLESFQQFLIDDKVEGQTVTPFLNSIYHSKSTYSFSNFFHQVGQG KTSDAENMLETSTFGTPQGSLFAQLGSDQTFQAAPAILKQHGNYTSAVFHGNTASFWNRN NTYKNMGYENFFSASDFDVSGDKSTTYGLKDKLLFKDSVKYLQHLQQPFYAKYITVSNHI PYTLDAEDSDFKTPDTGDATVDGYFKTANYLDQSIEEFFNFLKKSGLYDNSMIVLYGDHY GISNSSNKALAKTFAQDPNHFKQFGDNPTENWNSWDNAQLQRVPLMIHIPGMKDGGIQNQ YGGEIDVLPTLLHLLGISNKNYIQFGTDLLSKQHSQIVAFRNNDFVTPTYSSIGNTLYDQ NGNEITDPSDAFLKKVKKDRKAAHKQLEMSDSLNEKNLLRFYKNPDFKKVNSADYNYSDG LDKAIKIEDKLKLKSTSMYSRNQDKSLEDLYKTDAPEVNHKSTSENRIKITNPDSNGS >gi|269838498|gb|ACXB01000013.1| GENE 19 21364 - 22347 194 327 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 [Streptococcus pneumoniae SP6-BS73] # 4 304 1 295 306 79 25 1e-13 MTEIYDITIVGGGPAGLFAGFYAGMRTAKTQIIESLAQVGGQAAALYPEKVIYDVGGYAG VKAADLAKSLEKQTRLVNVPIRLNETVVNITPNGELYDVETTKAKYQSRAILLATGNGAF NPRKLAVKGLEKLEGDKIFYHVPELAQFKDQDVLVAGGGDSAIDVALMLEKVAHQVSLVH RREQFRGLELSVQRLKESSVEILTPFLIHDVREEAAGVTVDLKEVGTEELTTRKFNQVVV NYGFTSSNKIIKQWDVELEQAHQMFAVDNLMKTNLPNVYAIGDGIEYQGKLRLIATAFGE GPIAVDQIMKKLYPGKRGPVHSTSMFK >gi|269838498|gb|ACXB01000013.1| GENE 20 22508 - 23464 1136 318 aa, chain + ## HITS:1 COG:Cgl1931 KEGG:ns NR:ns ## COG: Cgl1931 COG1957 # Protein_GI_number: 19553181 # Func_class: F Nucleotide transport and metabolism # Function: Inosine-uridine nucleoside N-ribohydrolase # Organism: Corynebacterium glutamicum # 3 309 2 306 316 340 57.0 2e-93 MASKKMILDLDTGIDDAMAIAYALAAPDVDLIGIISTYGNVLTPDAGINSLKILELLGHT DIPVFLGDEHSQTTDHFEVMPISAQIHGKNGIGEVDLPTPQRKLEEQSGIDFLIEAAHQY NSDLILVPTGPLTNLAAAIRKDPEITDLIGKVTLMGGALTVPGNVSPVAEANINQDPHAA NEVFTRQKNLTMVGLDVTLRTLLTKKETQQWRDLGTNAGRKFADIVDYYIDVYKITSPHL GGCALHDPLAVGVALDPSLVQTLALNMFVDTTDAMWGRTIGDPARLTDPEPNVNVAINVD ADRYLQRFMEYLTNLFSK >gi|269838498|gb|ACXB01000013.1| GENE 21 23556 - 25532 1494 658 aa, chain + ## HITS:1 COG:BS_yvgP KEGG:ns NR:ns ## COG: BS_yvgP COG0025 # Protein_GI_number: 16080395 # Func_class: P Inorganic ion transport and metabolism # Function: NhaP-type Na+/H+ and K+/H+ antiporters # Organism: Bacillus subtilis # 1 647 1 662 670 269 29.0 1e-71 MDVLFFILTLMLAVIVANILDSRIKFLPRAIVQILVGLLLSFVPNFNHFVLEPEIFMLAI IAPLMFHDGANTDINKLKLTLGNTFSLAVGLALTTILGVGYLSYLMLPHIPLALAFALAA IITPTDAVAVSSVTDNLEIPPDAMLNLKNESLFNDASGIVAFDLALTAFQTGHFSPLISI FDYLYVFLGGLIIGWIIGWAFLRLQFLLIESNIDDANIVVPINLIKPFAIYLAAELCGTS GILAAVAAGLVQSTQTPFLRLTSTKIQIVSKTTTENLNELLNGFVFILLGVSLPTVIYDI VNNSRQVASLTDLVLIGIVLYVTMIVIRYVWVSLRLASIRIRPQERFLNRFLIAINGIHG TITLAMAFSIPLVFKKAAFPFRNDLIFIAATVIVLSLCVPSIILPLVLPKKTVSYSADDI SKYRQQMINYAIQQVKDANEDPIETQAVIATLQSQESMFQRPKRRTIFKLLQKCFSLEEQ LLQEMVDQGEISSKLQTLYERMTFFQSYQLRQSLFYQILYRIKYSLIRLKHRLRHKAVHV NNQAIKRKIKIARDDIANVEAKIIPRILEELHNQITEENQAEVHWIESYYRERHRRLQNN KQANRIQDELFISAFQNEYNFIQNQLSKQNISRELANLLYEQVANDEWIYMQNDYIYA >gi|269838498|gb|ACXB01000013.1| GENE 22 25496 - 25669 81 57 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MDLHAKRLHLRVKKVLKGLSFKTILLRLFFFLQIYSHFVWVRSFQHPLLKNLLNVLF >gi|269838498|gb|ACXB01000013.1| GENE 23 25652 - 26584 748 310 aa, chain - ## HITS:1 COG:SPy1892 KEGG:ns NR:ns ## COG: SPy1892 COG1073 # Protein_GI_number: 15675706 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Streptococcus pyogenes M1 GAS # 6 308 8 305 308 298 50.0 1e-80 MKKFWKWLLVVLAVLLVVDLGAGMYFFHVAEVRGTKSFIKNDGKITKNDPLRTQKLWYQR VKKEKWTMKSASGNLKLEAYYIPAAHPTNKTVILAHGFLQNKDGEGAPAAMFHDLGYNVL APDDRAHGNSEGKLIGYGWLDRRDYIKWMNKLLREKGEHQKLVMYGVSMGGATTMMISGE PDVPHQVKAYIEDCGYTSVEDEITYQAKSMYHLPKWPLVPTVSLISKVRAGYSYGEASAM KQLEKNHQPMMFIHGGKDDFVPTKMIDQLYAATKGPKEKYVVKDAGHAKAMQTDYQQYRD RVKKFLEKNV >gi|269838498|gb|ACXB01000013.1| GENE 24 26759 - 27178 332 139 aa, chain + ## HITS:1 COG:no KEGG:PEPE_0362 NR:ns ## KEGG: PEPE_0362 # Name: not_defined # Def: XRE family transcriptional regulator # Organism: P.pentosaceus # Pathway: not_defined # 1 139 1 139 140 239 84.0 3e-62 MFPERLRALRHGKHITLEVLAQELNELFPDENPNTANQIGNWERGIRTPSYLEVKKLAEY FDVSMDYLCGRSALNAYDLSKLFLSGRQLSFDHKTLSSDDRYEVFQLINGYFHGKKRRPI NSSTEQEELDLNWQKRNDD >gi|269838498|gb|ACXB01000013.1| GENE 25 27182 - 28033 616 283 aa, chain + ## HITS:1 COG:no KEGG:PEPE_0361 NR:ns ## KEGG: PEPE_0361 # Name: not_defined # Def: SAM-dependent methyltransferase # Organism: P.pentosaceus # Pathway: not_defined # 1 283 1 283 283 393 72.0 1e-108 MNPKKLKKLRRQLKKAQTTQSSDRYLRQLTNYRNLFKDYGSIVFLINQVLESERLIRQNL LPQQLPLLELPDDVQEQIFNRLKERFPLGDPRGDRLWEKLTRELPKLDKLLRSYRDFLEE RYGMWAYISAPLINDLAAYLAGRPTLEIMAGNGYISHGLRMKDQPVIATDSLAWQSENET GRHLVTEVEPLDALAAIEKYGPQVDYVIMAWAPDGLDIDVQVLKKLRSLPNQPLLICIGE QNGATNSNEFWQIAQLVEPQAAAKLNQHFQPFDLIHDQVYLIK >gi|269838498|gb|ACXB01000013.1| GENE 26 28372 - 29016 609 214 aa, chain + ## HITS:1 COG:STM2367 KEGG:ns NR:ns ## COG: STM2367 COG0586 # Protein_GI_number: 16765694 # Func_class: S Function unknown # Function: Uncharacterized membrane-associated protein # Organism: Salmonella typhimurium LT2 # 1 204 3 211 219 118 33.0 8e-27 MLNLIWGFLIHPLSYLTPLTTQLNQWVYLILFIWIFLETAFIFFSFLPGQSVLFLTGTIA STAPAHLNIFLLLLTFIAAATTGAMVKYWYGVNLESKNKIAQKISDSPQLDQTQKLFDKN TKKSLVFSRFIPFVGLFVPIIAGTTQMDWRRFNKLNFAGVLLWVLTCCFAGYFFGRTAFV RQYFTLIFLMLIFVPFMIELIWRKIKGRVQTDAT >gi|269838498|gb|ACXB01000013.1| GENE 27 29051 - 29281 275 76 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKYIKMIQEWLHRPRHFIVEVGWGLGLLLGLLLVVKIIGRLVLHTTFIGFGAILGVMVLY LVIIFGLRALEIKLRK >gi|269838498|gb|ACXB01000013.1| GENE 28 29268 - 29942 697 224 aa, chain - ## HITS:1 COG:BS_yciB KEGG:ns NR:ns ## COG: BS_yciB COG1376 # Protein_GI_number: 16077404 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 65 223 35 193 194 147 44.0 1e-35 MKRRFELIIGLAIVLFVGAVFTSARAYQKQVRHDAKVELQKSAKQKALPKSSAKDTGLAG GEAPTAETAKASAKTKMNPVNWKKSSQKNEYPDLDKHPQAYLKVSIAKQRVYVMDGKKVL YTMYASTGSKDSPTPTGTFHIQKERGDFFYNAASKEGAKYWVSFKDHGIYLFHTVPTDKN GKFIPKEAQQLGKEAQSHGCVRLSVPDAKWIYKNVPEGMKVEIH >gi|269838498|gb|ACXB01000013.1| GENE 29 29956 - 30420 592 154 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0357 NR:ns ## KEGG: PEPE_0357 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 147 1 147 156 192 70.0 2e-48 MKILANDVIQTLKAGDFASQTFKIGKATLKKADGTGADEAFNYLKTAVNQHGIAEAVINV NKDVVIKLQSNVINLPLLYPAAVEKLTEADQEYDLNVYTVIEAEKINSSHLRIDQIGTAD DLLNDNPDLHLNFRDWVKEQFERLDQPAAKSTTE >gi|269838498|gb|ACXB01000013.1| GENE 30 30546 - 31409 958 287 aa, chain + ## HITS:1 COG:L81616 KEGG:ns NR:ns ## COG: L81616 COG2084 # Protein_GI_number: 15674197 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases # Organism: Lactococcus lactis # 2 286 3 286 293 316 53.0 3e-86 MKIGFIGTGVMGTGIINNLLKHHHQVFVYNRTKAHAQEVIDHGAIWVDSPAQLTTQAPIV ITMVGFPQDVKEIYFGENGIFTTLKADQLVVDMTTSSPTLAEEIGHRAEEIGALALDTPV SGGDIGAKNATLTVMAGGHQEAFKKMEPLFPEISQAANYFGDFGTGQHAKMANQIMIAGT MTGLTEMLVYAKAANLDLQKVLDTVSHGSADNWSLDNYVPRILKDDYTPGFFAKHFLKDL NITLTEAKRMHIDLPATRLATQLYDNLVNAQGLGDDGTQALVKLWWK >gi|269838498|gb|ACXB01000013.1| GENE 31 31482 - 32372 788 296 aa, chain - ## HITS:1 COG:CAC1481 KEGG:ns NR:ns ## COG: CAC1481 COG0583 # Protein_GI_number: 15894760 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Clostridium acetobutylicum # 1 291 1 292 292 171 33.0 2e-42 MDTKKLTTLVDLAETQSYSETAERLFLSQSTVSKHIMALEKEWDVKLFSRAHRQVQLTAA GKKILPAVQQLLRQEKELQTTVAIANANHAQTLVIHGIASIAQYQAFNIITKFTSQYPNV KLKFSEAEVPDLNEDLKRQDVDVIFTRIYEDNDPRYDTIVNETDHYVVLVPKNSLLAQAK QLSIEMIKDQQLLLLRNTITVANPLNEVLKRSLVTPRIVYEGQRIDLILEMLNQGMGVSV VMNKSFDLTGFDNVKAVPLVPEICSRLVFLKRRDRTAPVVNLFWDFAKREIEQAKE >gi|269838498|gb|ACXB01000013.1| GENE 32 32490 - 33227 904 245 aa, chain + ## HITS:1 COG:CAC1482 KEGG:ns NR:ns ## COG: CAC1482 COG1811 # Protein_GI_number: 15894761 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein, possible Na+ channel or pump # Organism: Clostridium acetobutylicum # 1 245 1 242 242 227 55.0 1e-59 MPIGIIVNVSAIFFGGIIGALSGGAMSERFKEGLNMAFGICSMTMGIYAIAPMKNLAAVI FAVIIGTGLGLLFRLGVLINRGAENMQRLISRLLPSNKTGNGSWDKITYDANLVTVIVLF CASGTGIYGSLIEGMSGDPSILISKAILDFFTAMIFAANLGYVVSLIAIPLLIILTALLL AAHVIFPLTTPDMILDFKAGGGVLMLASGFRIIQVKMFPTADMIPIMIVIMPISWLWTNV ILPLL >gi|269838498|gb|ACXB01000013.1| GENE 33 33392 - 34264 1047 290 aa, chain - ## HITS:1 COG:SP1721 KEGG:ns NR:ns ## COG: SP1721 COG1940 # Protein_GI_number: 15901554 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulator/sugar kinase # Organism: Streptococcus pneumoniae TIGR4 # 2 287 4 293 295 347 56.0 1e-95 MLLGSIEAGGTKFVCAVGNENYQVQDQTQFPTTTPEETLQRTVDYFKKFDIAALSIASFG PIEIRHSSPKYGYVTTTPKPGWADTDFVGYIKKEFDIPIFWTTDVNGSAYGEYVMATLAN EKINSLTYYTIGTGVGAGAIVNGHLIGGIGHPEMGHVLVKRHPDDLDFKGVCPYHGDCLE GLVAGPTFEARLGVKGAEVPHSDPVWDIMAYYTAQAAIQTTLMLRPGKIVFGGGVTNPDF LEKVRKSFKELLNGYVQVPDLDKYLVMPEVANNGSATLGNFALAEKLLEV >gi|269838498|gb|ACXB01000013.1| GENE 34 34488 - 34949 435 153 aa, chain + ## HITS:1 COG:lin1615 KEGG:ns NR:ns ## COG: lin1615 COG0589 # Protein_GI_number: 16800683 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Listeria innocua # 1 146 1 144 152 109 43.0 2e-24 MLQQYKNILAPVDGSKMTEVVVDRAIEVAKRNNTHLDILNVLEVNQFSDTYGGAVSGDVI YKLSEDVQHRLEELKKRAEDAGVTDVSIHIRFGNPKPVIAREFPKDHKNELIMIGSTGLN ALERLMVGSVATYVSRNAVCDVLVVKPEKKAKK >gi|269838498|gb|ACXB01000013.1| GENE 35 35015 - 35929 474 304 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit [Lactobacillus helveticus DPC 4571] # 5 286 3 279 285 187 40 3e-46 MTWTYHIKLDQSYSPQTLRELLQKTWWLSRKVVHFLRTERRVLVNQRYQPVSTVVRTGDL ISLTFKESDFSTPLPPFDPDSSQSPDVLFENDDLLVVNKPAGIKTHANQPHELGSMINFL QAYFAKKDSNAYNVHRLDQWTSGALLVAKNPVVVPILSRQISQKLIQRTYLCVVEGHLKS RSGTITLPIGLDPHDQRKRQINGPGAQPATTHYQVVREFVERSLLRVQLATGRTHQIRVH LAALGHPIVGDPLYNSLADGAPMRLHSWQVKFPLPFSQSWQTVTAPVPNYFGISLAEPAF DVGD >gi|269838498|gb|ACXB01000013.1| GENE 36 36092 - 36547 349 151 aa, chain + ## HITS:1 COG:BS_yjhB KEGG:ns NR:ns ## COG: BS_yjhB COG1051 # Protein_GI_number: 16078284 # Func_class: F Nucleotide transport and metabolism # Function: ADP-ribose pyrophosphatase # Organism: Bacillus subtilis # 3 144 16 158 170 132 44.0 3e-31 MQVTTVAELFKDEAGYPTPKVDVRAFIRQKNQVLLVENSHGEWALPGGFAEIGWTLKENV IKEVHEETGLTVNTATLRAVYDTSLRKDVPQTFQYYKFIFACTVESGEFVKNSETVAMQW FDKDQLPPLSMKRTTPEQIAQLFDSVDLHVD >gi|269838498|gb|ACXB01000013.1| GENE 37 36669 - 39032 2263 787 aa, chain - ## HITS:1 COG:CAC1343 KEGG:ns NR:ns ## COG: CAC1343 COG3957 # Protein_GI_number: 15894622 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoketolase # Organism: Clostridium acetobutylicum # 9 783 18 794 796 976 58.0 0 MTDYSSKAYFDKLEKFWRAANYLSVGQLYLKDNPLLKRDVKASDVKVHPIGHWGTIPGQN YIYAHLNRVINKYGVNMFYIEGPGHGGQVMVSTSYLDGSYTEAYPAITQDEEGMKKLFKQ FSWPGGVASHAAPVTPGSIHEGGELGYSLSHGVGAILDNPDQIAAVVIGDGEAETGPLAT SWNHNRFINPITDGAVLPILDINGYKLSNPTLTSRMTDEELAEFFHSQHWDPYFVEGDDS EAMDPKMAEVMDKAIEKIQEIQKNARENHDESLPYWPVIVFRSPKGWTGPKTWDGKVIEG TFRAHQIPIPVDQNNMEHVDALVDWMKSYKPEELFDEDGHIDQDILDFVPKGDKRMAANP ITNGGVHPTDLNLPDFRQYAVDTSKRGLNMKQDMLVWSDYLRDVVTKNPKNFRMFGPDET MSNRLYGLFEVTNRQWMDSVKKDWDEAVAPEGRILDAQLSEHSAEGWLEAYTLTGRHGIF TSYEAFLRVVDSMLTQHFKWLRKASELDWRRDYPSLNIVSTSTSFQQDHNGYTHQDPGIL THLAEKKPEFIREYLPADANSLLAISPLVMNDRGKVNLIIASKQPRPQFYSMAEAEMLAN NGLGIIDWASTTNGEEPDVVIAAAGTEPNMESLAAINILHDRFPELKIRFINVIDLLKLQ SPKVNPNGLSDEEFDRYFTKDKPVIFAFHGFEDLIRSIFFDRHNHNLHVHGYREEGDITT PFDMRVLNELDRFHLAQDVINSIPEFNEKGADFAQEMDNILARHHEYIRDHGDDLPEVKD WVWKDVK >gi|269838498|gb|ACXB01000013.1| GENE 38 39270 - 39992 704 240 aa, chain - ## HITS:1 COG:BS_ydhQ KEGG:ns NR:ns ## COG: BS_ydhQ COG2188 # Protein_GI_number: 16077652 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 6 230 4 225 237 123 32.0 3e-28 MKDLIYRKIIHDLKKRIFNNEFPSMRLPDERSLTAEYNVSRSSVKRALSSMAQEGIVFKK RGSGTFINPLYLKSQSSFNYEGSNIGITDSLKSNGKKQGIKVLDFSVIPATKSMKTDLFL NDGDFVYKIRRLRLLDEEPIMIETGYIPIKIAPELSKAIVEKSIFNYLEDAKGQQVTRSY MSIQVAPSNQEDQELLGLTANEPVGIMSGIFFMDDGTPFEISNMRIHYRHMNYSTFVSVD >gi|269838498|gb|ACXB01000013.1| GENE 39 40101 - 40604 547 167 aa, chain + ## HITS:1 COG:L115671 KEGG:ns NR:ns ## COG: L115671 COG2606 # Protein_GI_number: 15672298 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 6 167 3 158 158 150 51.0 1e-36 MSKKKKKGKLSKTLVEQILDKHKIEYQQFVFPTYQDGDVKQLNVDHIGIDDHVIYKTLAL TGSQTGPLVGVIPVDEHLSYKKLAKLSGNKKVGMIPLKNLVATTGYEHGANTPIGIYETK GFPIYISEIAKGQGTIIVSSGKIGRSVQLKATDLADLVHGTFGDITE >gi|269838498|gb|ACXB01000013.1| GENE 40 40657 - 41832 679 391 aa, chain - ## HITS:1 COG:malY KEGG:ns NR:ns ## COG: malY COG1168 # Protein_GI_number: 16129580 # Func_class: E Amino acid transport and metabolism # Function: Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities # Organism: Escherichia coli K12 # 1 388 1 388 390 365 45.0 1e-100 MINFDEVINRKGTYCTQWDYVQDRFGKADLLPFTISDTDFAVPPSVNEAIQKRIQHPIYG YTRWNHSDFKQATQHWFQKRFGLKVDGEWIVYSPSVIYSISQLLQIKSKPGEGVVMQTPA YDAFFKTIHANQRKLVENPLRYQNGQYTIDFANLEEKLADPNNQIMLLCSPHNPTGRVWT TTELQKMVQLCEKYHVFIIADEIHMDVVRKNVRHQNILKYVEQNAALLTSGTKTFNFPGL IFSYLLIPDPELRTQFNYALKNKDGLSSCSILGMEATMAAYKNGSAWVDELNEYVEANVE LVRTYLKQHLSQVKLVESEATYLLWLDVTDLPLSMETIQKYCVEVGKVAIMGGGIYGGNG KQFLRLNVGCPKTKVQDGLERLQQSITAALQ >gi|269838498|gb|ACXB01000013.1| GENE 41 41873 - 42250 496 125 aa, chain - ## HITS:1 COG:L146642 KEGG:ns NR:ns ## COG: L146642 COG2190 # Protein_GI_number: 15673114 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIA components # Organism: Lactococcus lactis # 1 124 72 195 195 114 51.0 4e-26 MIGQGAAIQPTDGQVVSPVDGVVTTVFPTKHAIGIKATNGMEILIHLGIDTVKLDGKPFE TKVAVDEQVKGGDLLATADWQMVADAGLATVTPVVVTNFAEYTNVGTITKGMVEKNTPII EVESA >gi|269838498|gb|ACXB01000013.1| GENE 42 42247 - 43914 1495 555 aa, chain - ## HITS:1 COG:malX_1 KEGG:ns NR:ns ## COG: malX_1 COG1263 # Protein_GI_number: 16129579 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Escherichia coli K12 # 2 444 3 449 450 472 55.0 1e-133 MSKGKKRIALGGFFQELGKTFMLPVALMAFMGLLLGLGSSFSSPTTIDAFPFLGNSILQV VFKYMSAIGGFAFNNLAVMFAMAIPLGLAKKEKGVAAFSGFVGYMVMNLAINFYLGLTNQ LADADAMQKAGQSLVLGVQTIEMGVLGGIITGIIVYNLNKKYCTIQLPDSFAFFGGARFV PIITSLVMAVVGIILPIIWPVFAFLINGVGALIHGAGPFGPMLFFSGERLLLPFGLHHIL VATIRFTQAGGTMLIDGHQVSGALNIFYSELQNHLPISHSATQFLSQGKMPAFMFGLPGA ALAMYHTAKPENRAKIKGLLISGFIATFITGITEPIEFLFLFISPFLWLFHVFMTGFGAL VVSLLGVNIGNTDGGVLDFLIFGVMQGTQTKWYLIPIVGIFWFLAYYFTFKKFILWRDLR TPGREVATEPEYTDAEIRTSGNAGGYDIPGILKALGGKSNIVTLDNCITRLRLIVKDGSI INDEELQKLGALGVVHLDDTSVQVIIGTKVTTVRNGLDALLEGAEPEAKKFQIGAPLAGK AVPLTEVPDAVFQLE >gi|269838498|gb|ACXB01000013.1| GENE 43 44004 - 44753 624 249 aa, chain - ## HITS:1 COG:lin2909 KEGG:ns NR:ns ## COG: lin2909 COG1737 # Protein_GI_number: 16801968 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 13 234 9 236 244 82 26.0 9e-16 MKFAIRAQNLEYKLTETEENIVEYILVHQAEVINMKIVTLAERFFTVPNTITRFCRKLGY GGFTELKVELRHELLEKQTGNQQLALIEENFGLVDEKREIKLAKLLQKARLVNFYAQDQT HLIAELGVECFQVLDSKFQLLGYEKEVLSRINNGAGDVFFFISISGETPAIVNLAKKAKE RGHQVVSLTNLSNNSLSAIADVAIYCLTEVTYIAGIEVTDKTPMFVILQSLFQRYLELCK ITPKKTETL >gi|269838498|gb|ACXB01000013.1| GENE 44 45246 - 45776 491 176 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0350 NR:ns ## KEGG: PEPE_0350 # Name: not_defined # Def: BS_ykrK family protein # Organism: P.pentosaceus # Pathway: not_defined # 1 176 1 176 176 295 88.0 4e-79 MSNYKEYQRWLELVSRVELPHWDDLPNFDLYMDQVVALMTEYTGPLGLEAVTPAMINNYV KNKVIVAPAKKKYQVMQIADILLLTLLKQSFSIQEIRSGIDRVTASEYPKQAYDRFIDLL NKKISLIGKSRPDRHAENLTDQLLEAASDMVVDQLETNQLVKIVKNSKSHEPTKIK >gi|269838498|gb|ACXB01000013.1| GENE 45 45924 - 46250 516 108 aa, chain + ## HITS:1 COG:no KEGG:PEPE_0349 NR:ns ## KEGG: PEPE_0349 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 107 1 107 110 168 85.0 6e-41 MFDPTKKRKVAEEVKEQFPSEVIKGLWDTLKQMKKDQIVVTPVIAFAFSDDFTDDEIYVM GLQNSGAVAKEYTIKYSGSKNFLGKGTIVVVQDKPKNITMKISDVNKQ >gi|269838498|gb|ACXB01000013.1| GENE 46 46426 - 47364 1143 312 aa, chain - ## HITS:1 COG:lin0643 KEGG:ns NR:ns ## COG: lin0643 COG4989 # Protein_GI_number: 16799718 # Func_class: R General function prediction only # Function: Predicted oxidoreductase # Organism: Listeria innocua # 1 312 1 305 305 360 56.0 1e-99 MKQINVGGMHASNVALGIMRMDALSDEKAAEVIDAAVDAGINYIDSADLYGHGASSAKFK AGLKLAKASRDELYIQSKGGIVSENDGDIPYGNRYNFSKQHLIAAVDGELQRLGVDYLDS FLLHRPDPLMEPAEIAEAFDELQTAGKVRHFGVSNFNPMQIELLQKYLQQKLIINQLQFG IMHTGMIDFGMHTNMTDDRSVNHDGQILEYSRIHDMTIQAWSPYQYGFFDGVFIDNPKFP ELNKKMQEIADIYGVTKNAIATAWILRHPAQFQVLLGTMNPQRIKESAAGSDVELTGQEW YDIYYAAGNDLP >gi|269838498|gb|ACXB01000013.1| GENE 47 47587 - 48972 1266 461 aa, chain + ## HITS:1 COG:lin2334 KEGG:ns NR:ns ## COG: lin2334 COG1253 # Protein_GI_number: 16801397 # Func_class: R General function prediction only # Function: Hemolysins and related proteins containing CBS domains # Organism: Listeria innocua # 10 440 7 430 434 255 34.0 1e-67 MDSGQIVSNLIVILITFILAYFFVAAEFALVQTRPSALEEAEKEATSARKRKKYRLAMRM VSRLNEYLSTTQVGTSICGIILGWIGESTVEYFVVELFGATHMVNSASLHIVGAVIGVLL LTYLEVVITEIVPKNISIDIPLKVLMWVVTPLHYFHTAFYPFVWLLNASANGIVRLMGMQ PADENSEIFSQAEILNLSKNAVSGGELDKNDYVYMQRAFDFNDKVAKDIMIDRTQLVVLD VDSTVDDALRQYLQSRFSRFPVVANNDKDKILGYIYNYDIIRQSQVDGNIKVSKLLRNII TVPETLALQDVLEQMIKKQVPISVVVDEYGGTSGIITDKDIYEEVFGNINDEIDDVSGDY IHKEADGYFKVSGKMTVYDFERYFGIDVPDFEEEDVVTLGGYVIDHNPEIKVHEHVRIQN YDFEVLDNENAHIDWFLVHKLKPEELADVPPVVPEVDHFTD >gi|269838498|gb|ACXB01000013.1| GENE 48 49033 - 50643 1345 536 aa, chain - ## HITS:1 COG:BH1004 KEGG:ns NR:ns ## COG: BH1004 COG3559 # Protein_GI_number: 15613567 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative exporter of polyketide antibiotics # Organism: Bacillus halodurans # 16 536 17 533 534 281 34.0 2e-75 MKNKMKGYGLLTALNLRRDRLNIGVWVLVLAGLMASVAFKFETLYGTRQAISSIKATLNT PAMQAFFGTFDTPLKTSGDLFATEMLVFMAIAMIAMNIYFAIRATRGEEDQGLTELVVAH DVGNWSIIMAALTELFIINAVTGVLYSLAIQFSSMAGVNANGAWLIGLSLAAGGLLFGMV GLLMAQVFDNARSATIASYMILGVMYVARMFTDLKNPAQTWWVPLGWIEKIEAFHDNNWT PVFLTFSLGMLIGLAVLAVNQSRDVGAGMFQGSVGRARAARTLQGPITLIEKLQRHSNWI WLFSLFILGGMLGSIFDTVGDILKSNPTMQLVMQKSAIHSANHQILLNFISIIGMIMAVL GTIPAVMSVNKLHGDQQRGYLENVYAKAVSRNRLLTGYVANGVEIGVLGFAVGLLGVDVA GNWVLTQGDIGFAAYVKTFIAFAPTIILTVGLAVCFNGIAPKLNGITWLYLGYAFFTSYL GGLLKLPTWTKQLTGLGWTKMVPLDKVNYSYVFVLIALGLLLMVIGYWGFNRRDLS >gi|269838498|gb|ACXB01000013.1| GENE 49 50633 - 51565 777 310 aa, chain - ## HITS:1 COG:L192192 KEGG:ns NR:ns ## COG: L192192 COG1131 # Protein_GI_number: 15672947 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Lactococcus lactis # 5 297 3 292 292 357 57.0 1e-98 MNAKKVLDVQQIQKNFGKVQALRNVTFQVNRGEVFGFIGPNGAGKTTTIRVILGIIKASA GKATMFDQDVWQNRVAIHRRLAYVPGDVYLWPNLTGGEIIDLFLKMNGEKHSKRTDELIE RFDLDPKKKARTYSKGNRQKVALIAAFSQNAECYIFDEPTSGLDPLMEEVFQEEVLKLKN EGKAILLSSHILSEVERMCDRIAIIREGIIIEQGTLDEMRHLTRTQITVATKDAAETVKN IPGVHAFEVDQRNPKKISFSVDTDAISKVMRILTEKNILAIQSTPPTLEDLFLRYYKQDA NQRKVIDHEK >gi|269838498|gb|ACXB01000013.1| GENE 50 51934 - 52758 490 274 aa, chain - ## HITS:1 COG:lin0029 KEGG:ns NR:ns ## COG: lin0029 COG0561 # Protein_GI_number: 16799108 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Listeria innocua # 4 274 1 268 269 147 33.0 3e-35 MKVVKPHLVFMDIDGTLIDNHQNVLPATKQVIERLQREGVVFYIATGRMLSLAKLIQKKI NDDVEIIASNGSVYQKGNHIHQEHLGWNALKEIYQITMDLGLSTNFFTTEMTYYTNKKPW RLSRLARVRVMADKMGNRGFEKIQDLDHLQQLSSQIINGITIDDEPSARLQEAKERLMAT KLLAVSSSSPNNLELIPRRISKATAVRAIMDKYQIPVERTLAFGNDMNDLEMIRAVGTGV AMGNSPELLKKEADAVTESNLENGIGKFLERYFN >gi|269838498|gb|ACXB01000013.1| GENE 51 52913 - 53386 536 157 aa, chain + ## HITS:1 COG:SP0158 KEGG:ns NR:ns ## COG: SP0158 COG1780 # Protein_GI_number: 15900096 # Func_class: F Nucleotide transport and metabolism # Function: Protein involved in ribonucleotide reduction # Organism: Streptococcus pneumoniae TIGR4 # 5 154 4 153 156 137 44.0 6e-33 MKNEIHLLYISIAGNTQSFVDDLSDYAEKMHQQDPKNPLIFAKEITDETEFADEEIPYFA FVPTYLDGGNGIDNGVKELMTNVLGEYIAYHHNRELCLGVVGSGNRNFNEQYCLTARRYA RDYGFEMIDDYELRGTTKDCERIYANMAERVEEEINV >gi|269838498|gb|ACXB01000013.1| GENE 52 53401 - 54192 728 263 aa, chain + ## HITS:1 COG:lin1914 KEGG:ns NR:ns ## COG: lin1914 COG2365 # Protein_GI_number: 16800980 # Func_class: T Signal transduction mechanisms # Function: Protein tyrosine/serine phosphatase # Organism: Listeria innocua # 12 262 51 297 298 148 37.0 8e-36 MERARLLPIATGLNFRELGGYKTLDGKTIKWNKIVRSGRLSGLSQTDLDFLANYPIKYDV DFRSPEEKSQAPDQVPAGAKYTFDPVFPVDETQSTKQTSDLQRKMNYDPTSGLVEMRRVY RDVINQSHAQKAYRKFFDVLLANSDEDSALLFHCTAGKDRTGMGAIFFLSALNVDEDTIR ADYLLTNRAIKPRIDNLVMDLKLQNKNSAFIQSAKALQSVNISYYNSAMEAIKKLSGSTQ NYLKEYLHLTDHDLADLRKIYLE >gi|269838498|gb|ACXB01000013.1| GENE 53 54475 - 55254 568 259 aa, chain + ## HITS:1 COG:lin1914 KEGG:ns NR:ns ## COG: lin1914 COG2365 # Protein_GI_number: 16800980 # Func_class: T Signal transduction mechanisms # Function: Protein tyrosine/serine phosphatase # Organism: Listeria innocua # 1 258 40 297 298 119 30.0 4e-27 MKPERILDLPHAVNLRELGGYQNINNQTIKWRKLLRSGELSRLNEHDGAVLADYGLKYDI DLRSPSEVTWSPDRVPTDIIVRSYPVYPIHDGETSDIPVNQHLQYQSHVEAMYDPYLVMV LNEHARLAFRQMFIDLLANDQENESLLFHCAAGKDRTGVAGMLIMAALQVPYSTIREDYL LTNLVYSRRDPDELRKQIANRHANQLIQKMNSVFSVAASSLDRTHQLIIDRFGNWDHYFK EALELSETDLQDLRRLYLE >gi|269838498|gb|ACXB01000013.1| GENE 54 55334 - 55795 502 153 aa, chain + ## HITS:1 COG:lin2984 KEGG:ns NR:ns ## COG: lin2984 COG4405 # Protein_GI_number: 16802042 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 5 152 8 153 153 89 34.0 2e-18 MATPVEAIWQAFTEQSGVKGDRFQTRWFGPQDQPAEIDRLNNLILKGQKRATTKPLAYYS AEQEAIPQAGDYFVLLDGQMKPVAVIKTVVSELIPFLRVSAEHAYNEGEGDRSLEDWRER SLHKFERLMANYDNQFSTDDPVVTELFEVVYRR >gi|269838498|gb|ACXB01000013.1| GENE 55 55868 - 56770 738 300 aa, chain - ## HITS:1 COG:lin1818 KEGG:ns NR:ns ## COG: lin1818 COG1295 # Protein_GI_number: 16800885 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 20 271 24 275 289 149 32.0 6e-36 MTFKVFLRKSETFLKALLKRFNEAEVVNNSIVLAYYLLLSFFPLVMLLGTLLPLFQIRVN TVLEYIETAVPETIYNITEPIVKDFLGSGNGELFSFSLVMTVFSASQAVAAFQRTVNRAY GVAKYQNPIINRVVSFFLTVVIIAIMAVLVFLFSFGQTLVSYLTPILNLPTHLFALVGQL KWPVTIVGLFVGLSLLYYLVPNAKIRFKYVIPGTVFATIGTMVLSQVFSFYLRIFARSVT SYKTLGTFIAIMFWLNFSAMIIMFGGVLNATWQELREGKIIETAGSLRKVVGKYKINIHK >gi|269838498|gb|ACXB01000013.1| GENE 56 56783 - 58219 997 478 aa, chain - ## HITS:1 COG:lin2733 KEGG:ns NR:ns ## COG: lin2733 COG0477 # Protein_GI_number: 16801794 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 19 464 23 477 493 78 22.0 3e-14 MKELQRLRSQLSSADYHHVIVLILGMLTMLVGEFSTALPIAEILRNFNSGGTTVQLVNIL PLAILALMYPLGPVWLQKRTVTTLFRDSLKVFIIGTVIIGLAYTLPLMLVGRIIQAVGCG MMLPMFATLVSALLPEDSRFSDFNQLEDIITGVATITALLLTGMSFLILHAWQWANLLVI LGSLIVYGMANEIEIDLEAQKYSIEWVNFGLSGGFLLLIGGMVLLTKTGLALASWWRWFF LLSALICLALYVRREWQVKNPLIDFRGLLDVRYLRAVLLQGIGAASFASLLVIGVLYLRQ GLHYATWAIGVSLIPGIVVRLLVHHGTIPLLKNVSTIKRIRMATGIMMLGWGCLTIFSTY LNLLLFVILTMLIEAGHGLLIQVGKQLNQRPRSRRLINMADIFAGQFKLMATSLILTVLS VVLQNVTESWSFSGLPGQLSSLAGYRAAFLVFFIITILSWLVTMIAGRNYNLSKHIVK >gi|269838498|gb|ACXB01000013.1| GENE 57 58376 - 58834 366 152 aa, chain + ## HITS:1 COG:BS_perR KEGG:ns NR:ns ## COG: BS_perR COG0735 # Protein_GI_number: 16077938 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+/Zn2+ uptake regulation proteins # Organism: Bacillus subtilis # 1 146 1 142 145 131 42.0 4e-31 MAKNTIDEAIEHLRKKHIRITPQRRLVLEYLIQKRNHPTVETIFHALNSKTPNLSLATIY NTLKLLVDQGLVIELTSGEDGIHYDYYGHPHFHVICTNCGKIIDVDYPDYAADLAKIDRV AATKTGFDIIANHVEVEGLCPDCKKQGTMGTK >gi|269838498|gb|ACXB01000013.1| GENE 58 58986 - 59957 1228 323 aa, chain - ## HITS:1 COG:L107797 KEGG:ns NR:ns ## COG: L107797 COG0280 # Protein_GI_number: 15673641 # Func_class: C Energy production and conversion # Function: Phosphotransacetylase # Organism: Lactococcus lactis # 1 323 1 324 326 362 60.0 1e-100 MNLFETFKNKVKEQKRTLVLPEGEDQRVLGAAVRLADEELAKVIVLGSKENIQALAQKDH LDLANLQIIDPAEYPADEKQVMVDKLVERRKGKNTPEQAIKMLEDVNYFGTMLVYLGKAD AMVSGAAHATSDTVRPALQIIKTKPGMRRISGAFLMQRGDERYVFGDSAINIDPDADTLA EIAIQSAETARSIGIDPKVALLSFSTKGSAAGEMVDKVVEATKLAKERDPKTPIDGELQF DAAFVPEVGATKAPESDVAGHANVFIFPELQSGNIGYKIAQRLGGFEALGPVLQGLNAPI SDLSRGASEEDVYKVSIVTLAQA >gi|269838498|gb|ACXB01000013.1| GENE 59 59961 - 61160 1161 399 aa, chain - ## HITS:1 COG:BS_ackA KEGG:ns NR:ns ## COG: BS_ackA COG0282 # Protein_GI_number: 16079999 # Func_class: C Energy production and conversion # Function: Acetate kinase # Organism: Bacillus subtilis # 1 396 1 395 395 447 56.0 1e-125 MEKIIAINAGSSTLKFKLFEMPEEKVISSGAVDRIGIPGSNFTIKTADGHKTKIEQPIKN HEEAVDLLLQQLLKLDIIKDYHEITGVGHRVVAGGEIFQDSALINDQVLKDIEDLKEYAP LHNPANATGIRAFKKILPDITSVAVFDTSFHGTLPEKNYLYSIPYEYYEKYGARKYGAHG TSHRYVAGQAAKLMQKPLEDLKLITLHLGAGSSITAIKDGKSFDTSMGFTPLAGITMATR SGDIDVSLVVYLMEKLNIKDPRKMLEILNEKSGLLGLSQLSPDLRDILDAADDGNHRAEV AVDILVNDIVKYIGSYATEMGGLDGIVFTAGIGENSVPIRQKVVNRLGIFNAKLDDGLNQ QRGERFINQADSAIKIMVIPTNEELAIAREVERFKKMED >gi|269838498|gb|ACXB01000013.1| GENE 60 61554 - 62267 799 237 aa, chain - ## HITS:1 COG:L14408 KEGG:ns NR:ns ## COG: L14408 COG0363 # Protein_GI_number: 15673555 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase # Organism: Lactococcus lactis # 1 234 1 234 235 324 70.0 8e-89 MKVIIVKNDVEGGKEGYKVFADAKKNGAKTFGLATGSTPITTYQEIIKSDLDFSDSISIN LDEYVGLPADSDQSYNYFMHKNLFDAKPFKHSYLPNGRAKDIEAEAKHYDEIIAENPIDL QILGIGRNGHIGFNEPGTPADSTTHKVALTQSTIDANARFFEHEEDVPRFAISMGLASIM QSKHILMEAYGEDKADAIKGMIEGPVTTDLPASLLQNHDNVTVIVDEAAASKLSGKY >gi|269838498|gb|ACXB01000013.1| GENE 61 62486 - 62716 393 76 aa, chain + ## HITS:1 COG:no KEGG:PEPE_0330 NR:ns ## KEGG: PEPE_0330 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 76 1 76 76 104 78.0 9e-22 MSETIFFNPGDSIGNFHDYNEAVRKGHLYKQKQRLDDELVVVNNKDKNEEYAIFYVRDRQ PNQDKNNASYDVRKKI >gi|269838498|gb|ACXB01000013.1| GENE 62 63222 - 63518 339 98 aa, chain - ## HITS:1 COG:CAC0249 KEGG:ns NR:ns ## COG: CAC0249 COG0346 # Protein_GI_number: 15893541 # Func_class: E Amino acid transport and metabolism # Function: Lactoylglutathione lyase and related lyases # Organism: Clostridium acetobutylicum # 2 98 30 126 126 110 54.0 5e-25 MQVVQETKRSDKQDVKLDLRFGDLMVELFIKPTAPKRLTYPEAAGLRHLCFKTEDIAADV AELKAKGIRVEPIREDELNQRKMTFFFDPDDLPIELHK >gi|269838498|gb|ACXB01000013.1| GENE 63 63750 - 65189 1229 479 aa, chain + ## HITS:1 COG:L184516 KEGG:ns NR:ns ## COG: L184516 COG0477 # Protein_GI_number: 15672362 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 17 475 8 467 467 356 46.0 5e-98 MNEAVTSAFKNKKTLILIALGIFTFMSTLDGSIVNIAMPIMSKEMNISLSRIEWVVSIYL IVISALLMFFGRLGDVIGKSKVFRIGTAIFILGSLLAGINLGLAFLLFARAVQAIGAAMT MSNSFGITTSTFPIEQRGRAMGVIGTFVALGAVAGPAIGGLILNYLTWNYIFWINVPIGI IAVLIGVKSLPHDQPLAANAPIDWTGAIEFAICIITFFFAILRGQERGYLNPLILGALLI AIISFILFIHTENHRRHPLLDLSIFQYADFTLGLIAALLVFINGFFYNVLMPYYLVNARG LSSGVAGTLLSIIPLTMVIFGPVGGFLSDKFGGAKITVIGVTLLLISQFLIMGFNLQTPY WFFIFASIVTGMGTGLFQSPNNASVMSAVPHNRLGIAGSVNALARNLGMILGVTISTSAL FLLMSAKAHTSLTTYPHGNDQLFIFGMHFSFAISAGLLAIADIIVIRRWLITRRKTLEA >gi|269838498|gb|ACXB01000013.1| GENE 64 65283 - 65690 574 135 aa, chain + ## HITS:1 COG:no KEGG:PEPE_0325 NR:ns ## KEGG: PEPE_0325 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 135 1 135 135 153 60.0 2e-36 MEINITQSAQEYLSTKNIGQRHVFLALDDGSSKFSKLGGSCSIGNKFQLVVADNEDADYA EPVENNAGLQLTTGHDEPTYLGEGLTLDYKMGLLSLRDNSGIIDNAVTVTNFVPQDDGDG KQLKKDMQELGNRIC >gi|269838498|gb|ACXB01000013.1| GENE 65 65798 - 67180 1236 460 aa, chain - ## HITS:1 COG:lin0374 KEGG:ns NR:ns ## COG: lin0374 COG1053 # Protein_GI_number: 16799451 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Listeria innocua # 13 452 59 496 506 395 45.0 1e-110 MTQSQSIQSIAAENQFDTVIVGAGSAGLVSALALAEAGKRVIVLEKMAKPGGNSIRASSG MNAAKTVVQEHAGIKDTYESFFEDTYRGGGRKNNVDMLRYFTSHAAEAVDWLKEHGIVLD DLTLTGGMSVKRAHRPSSAPAIGGYLIHHLVDDLTQKQVPILCQTKVVNIMRMESGDFQL IAENQAGDRQTLRSATVILATGGFSASQDLIAYYRPDLLHYRTTNQPGATGDGLRLAQQL GAQLIDMAEVQVHPTVYQDSARTFLIGETVRGEGAILVNHQGRRFVNELATRKEVTAAIN AQSPANAFLIFNQALINRVVAVQFYDQIGLVTHGATLAELADQLEIPQAALDTTMATWQT VVHQQHDAEFGRTTGLVDDFATGPFAAIPVAPAVHYTMGGVKVNVETQVLDDQQQPIAGL YAAGETVGGLHGNNRLGGNSIAETVVFGLAAARQIENYQV >gi|269838498|gb|ACXB01000013.1| GENE 66 67194 - 68105 796 303 aa, chain - ## HITS:1 COG:L182555 KEGG:ns NR:ns ## COG: L182555 COG0167 # Protein_GI_number: 15673328 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotate dehydrogenase # Organism: Lactococcus lactis # 3 303 6 308 311 311 51.0 1e-84 MQRLETEIAGVTLKNPVMNASGTAAYGQSLAEKMDLNELGALVIKSTTQTPRAGNPWPTT AETSAGWLNAVGLKNPGIDHVLSEELPWLANNFPTLPIVGSVAGNIFEEYVTVAHRMASA PNVKLIEVNVSCPNVKKGGIAFGTEPQMVRELTQAIKAQVDCPVLVKLTPAVTAIEPLVL AAEAGGADGLVMINTLMGMEIDLHTRKPHLSNGTGGLSGKAIHPLAVRMVHQARQVTDLP IIGVGGVFTPADALELMVAGAQAIQIGSASYGNPRACHDVITELPAAMDRYGFERIADFK VKN >gi|269838498|gb|ACXB01000013.1| GENE 67 68117 - 71290 2758 1057 aa, chain - ## HITS:1 COG:SP1275 KEGG:ns NR:ns ## COG: SP1275 COG0458 # Protein_GI_number: 15901135 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase large subunit (split gene in MJ) # Organism: Streptococcus pneumoniae TIGR4 # 1 1054 1 1055 1058 1393 66.0 0 MPKRTDLNKILVIGSGPIIIGQAAEFDYSGTQACLSLKELGYQTVLVNSNPATIMTDTDV ADKVYIEPLTRQFVSQIIRKERPDAILPTLGGQQGLNMAMELAESGILKELNIELLGTKL DAIDQAEDRERFRSLMKELGEPVPDSAIATTVAEAVDFAKQSGFPVIVRPAFTMGGTGGG IVNDETELRKIAANGLTLSPVTQVLIEQSIAGMKEIEFEVMRDHADNAIVVCNMENFDPV GIHTGDSIVYAPVQTLSDREVQELRDAALRIIRALKIEGGCNVQFALDPVQNRYYVIEVN PRVSRSSALASKATGYPIAKVAAKIAVGLQLDEILNPVTGSTYAEFEPALDYVVCKIPRW PFDKFANADRRLGTQMKATGEVMAVGRTVEEATQKAVRSLDIDVAELHDERLANLNDTEL LAGIKVARDDRLFYLYEALRRGESLTKLAQLTKISVYFLDKLLHIYEIETALQDHPFATE WLTDAKYYGFADTTIARLWQTTADRVREFRQQTGIQPVYKMIDTCAGEFASSTPYYYSTY EFENESQVSEKPSILVLGSGPIRIGQGVEFDYATVHSIQAIRQMGYEAIVVNNNPETVST DFSMSDKLYFEPLTVEEVLNVIELEQPKGVIVQFGGQTAINLAEALADHGVPVLGTAVED VNRAEDRDEFNQLITENQFRQPEGRTATTVPAAITAANQIGYPVVVRPSYVLGGRAMEIV HNQAELENYMHTAVQVSHQHPVLIDQYLVGTECEVDVVSDGHDVVIPGIMEHIERSGVHS GDSMAVYPAQTLSTTVQNQIVEIATKLARCLRCVGLMNVQFIVHDEQVYVIEVNPRASRT IPLISKVTDLPLARIATKAILGQSIREQGLTPGLHRPGKLIHVKAPVFSFTKLNDVDSLL GPEMKSTGEVMGSDRTLAKALYKALEGAKLHLPDHGKVLLTVRNTDKEEVVGLAKRFWDL GYQLVATEGTAAVLKQNGLPVETVEKLTESTQILNEIKQHEIRTVINTIADDPDSANDGI KIRQTALTYGVPLFTALDTVDAILQVLEAQAFTTVHL >gi|269838498|gb|ACXB01000013.1| GENE 68 71293 - 72378 805 361 aa, chain - ## HITS:1 COG:L43866 KEGG:ns NR:ns ## COG: L43866 COG0505 # Protein_GI_number: 15673583 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase small subunit # Organism: Lactococcus lactis # 2 356 3 357 357 481 62.0 1e-135 MKRYLVLEDGTVYPGTAIGANQERIGELVFNTGMSGYQESLTDQSYNGEILMFTYPLIGN YGINRDDWESIRSSCAGVVVHEVARRASHWQMKMTFEEFLIQQELPGISGIDTRAVTRHI REHGAMKAALVNEVRDGLVEQIQQFKSNAHPIEQSATPRPYPNPATGRKVVVVDFGLKYS ILRELARRNCNVMVLPYDADAQTVLANNPDGVLLSNGPGDPEAVPDGVLQMIRTVEKQVP VFGICMGHQLFARANGARTMKLKFGHRGFNHPVRNLATGRIDLTSQNHGYAVDRASVAAT DLTITHEEINDESVEGLRHEKYPAFSVQFHPDAAPGPHDAVGLFDQFMRLIDQRKKIMEV R >gi|269838498|gb|ACXB01000013.1| GENE 69 72375 - 73667 1152 430 aa, chain - ## HITS:1 COG:SA1044 KEGG:ns NR:ns ## COG: SA1044 COG0044 # Protein_GI_number: 15926784 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotase and related cyclic amidohydrolases # Organism: Staphylococcus aureus N315 # 4 424 3 421 424 409 50.0 1e-114 MRTLIKNGRVVSNGRLQKADVLVEDQQISAIAPQLAETTVAERIIDAQNQLVLPGLVDVH VHFRDPGLTEKEDVTTGSQAALRGGYTTVLTMPNVNPVPDDPTRLAKMIAHNQQVGRVHI GQYAAVTKNRTSDQLVDFAALKEAGAVAFSNDGNGVQSAQTMYRAMQALQKIDLPLAAHV EDESLMQHGVMNAGARAQELGLPGIDELAETAQLARDLEIARKTGVHYHVCHVSTARSVE LIRRAQRDGVWVTAEVAPHHLFLDEQMITKDNPMLKMNPPLRRLADRQALLAGLLDGTIS MVATDHAPHTDADKAGSMKTAAFGITGLETAFALLYTKLVKPGICSVGQLINWMSTNPAQ AFRLREAGNLTAGAVADLTIVDVDHEYEIDVAAMASKGHNSPLIGQRVYGQPQLTMVAGQ IKFERRGISK >gi|269838498|gb|ACXB01000013.1| GENE 70 73672 - 74592 861 306 aa, chain - ## HITS:1 COG:L45002 KEGG:ns NR:ns ## COG: L45002 COG0540 # Protein_GI_number: 15673584 # Func_class: F Nucleotide transport and metabolism # Function: Aspartate carbamoyltransferase, catalytic chain # Organism: Lactococcus lactis # 1 300 8 307 310 320 52.0 2e-87 MNMHDLTTVENFNEADVLHKIKLAEEFKKGKKVQLKRPVYAMNLFFENSTRTHTSFEMAE QRLGMKMLEFEVQTSSVSKGETLLDTVKTIDAIRTDVAVIRHPQNDYYEPILDENLDISI VNAGDGSGQHPSQSLLDMMTIYEEFGRFAGLKVAITGDIAHSRVARSNAMLLNKLGAQVY FAGPEEWMAEDLADYGTYRPIDELVDQVDVMMLLRIQKERIQDRDNLRMEVQDYLTNYGL TKQRAERMQPHAIIMHPAPVNRGIEIESKLVECQRSRIFKQMTNGMYMRMAILTDVLNAK NLVMGA >gi|269838498|gb|ACXB01000013.1| GENE 71 74715 - 75368 584 217 aa, chain - ## HITS:1 COG:BS_pyrE KEGG:ns NR:ns ## COG: BS_pyrE COG0461 # Protein_GI_number: 16078620 # Func_class: F Nucleotide transport and metabolism # Function: Orotate phosphoribosyltransferase # Organism: Bacillus subtilis # 10 207 11 208 216 194 47.0 1e-49 MTETQTQAAIIQQLLELQAIQVKPDAPFTYASGIKSPIYTDLRMTISKPALRKQIATGLS ELIRQFYPTATVIGGVATAGIPHAAWVAEELGLPLIYVRSKPKDHGAGKQIEGALQAADQ VVLIDDLISTGGSVLKAGKAVRQTPAQLLGVASIFSYQLPDARQNFTAEETQLHSLIDYH QLIDYLATQQQLTPAQLDSARTWHQDPWQWDATTTIK >gi|269838498|gb|ACXB01000013.1| GENE 72 75796 - 76620 595 274 aa, chain - ## HITS:1 COG:STM0867 KEGG:ns NR:ns ## COG: STM0867 COG0561 # Protein_GI_number: 16764229 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Salmonella typhimurium LT2 # 4 272 3 266 271 146 35.0 4e-35 MTEIRLIASDIDGTFLNDQREFDRPRFQAQLDELSRRQIKFVVASGNQLAHCQEVFAGIE GDLTFVAEDGALTVEQGKVLDDNPLKPALLRDALDYLMSTPEFAEAKLILSTRQQAFTNM VPSDADWKDSAYFYQHLTPVAKLTAVNEPIYKIDIHWSGLTDVRPQAEQLQNALGDDLGC VMSGLGGMDVTMPHVTKAYGLTQLQNLWQISMDETMAFGDTQNDEAMLQHARLGYAMKNA EPEAKKATKLITKLDNNHSGVLDMIERLLAGEIK >gi|269838498|gb|ACXB01000013.1| GENE 73 76642 - 76971 502 109 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0310 NR:ns ## KEGG: PEPE_0310 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 109 1 109 109 141 63.0 7e-33 MAIIQVPHDLIEVRVKKEQLKEQGQTVAEEQLIEQAIQDNAQHLLDDILDGHYFTCKLEN DELVVYDVINAPTGKVAPRGTSFTEDFAQDADGLWDYLDKQLSKIAGGR >gi|269838498|gb|ACXB01000013.1| GENE 74 77055 - 77996 172 313 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163794676|ref|ZP_02188646.1| 50S ribosomal protein L13 [alpha proteobacterium BAL199] # 3 312 2 309 312 70 25 4e-11 MSEILLQSIQGVLVIIIMVAVGYYLASRHWFNEDSKKLLAKLVTQVALPPYMITSITKDF TKAELFKLLPNLWYPVLSMFILMGLAWLIVRLIHVNPRHQGLFTSMFFNSNTVFVGLPIN LAIFGERSLPYVLVYYMANTTIFWTLGVYFIQRDQQRQTQISLKSTLQKIFSAPLLGFMI GIVLIVLNIHLPSFLSSSFTYLGGLTIPLSMLFIGVSVYDAGLRNMRFQKDNLGVLLGRF VFAPSLMALLVMPSSMPLIMKQVFILQSCMPVMTNAPVVAKLYDADADFASIMVTESTLL SLIMVPVMMWIMG >gi|269838498|gb|ACXB01000013.1| GENE 75 78491 - 79516 1000 341 aa, chain - ## HITS:1 COG:lin2251 KEGG:ns NR:ns ## COG: lin2251 COG2855 # Protein_GI_number: 16801315 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 4 332 5 323 335 203 40.0 3e-52 MAKLVKEKSFWTAIGVTLLCALAGSLLAQLPYFSLIGALVISLVLGMLVQFSPRVVEKSK KGTGFISNKFLRLGIILLGFKLNLIDLAHAGVKTILLAVLIVGLTILVLYNLARKFNVES NLAMLVASGTGICGAAAVMGISPQIQVPADQEEQKREDEVMAIAVVAILGTVFTFIEIGL KSWLHLTPTQFGVVAGGSLHEIAHAVATGGAGGPVSLDTAIITKLSRVLLLAPVALIIGF WHRRRNEVNVANQTKGKLPIPWFMGGFILASVVGTFLPLGAGVLAGLVKLAYIFLGMAMA ALGMSVNFRVILKRGKGPFAAATIGSVLLLIFVIMASKWFF >gi|269838498|gb|ACXB01000013.1| GENE 76 79677 - 80531 689 284 aa, chain + ## HITS:1 COG:aq_638 KEGG:ns NR:ns ## COG: aq_638 COG0583 # Protein_GI_number: 15606065 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Aquifex aeolicus # 1 284 1 292 303 100 25.0 2e-21 MIDNRYATFALLSKNKSYTKTAKELFITQPAVSQQVKSLENELQLKLVEYRHPHLSITPA GQALARFIETTQHQENQLVQRLQHPAKATTLRVGVTHSVSIFMAPQLLRKWHDRYTHIQC TVANTRTILSQIDTGKLNIGILEGNFDKSLYSSQTITTEDFVAVTRASSPLAQRSSLTLT DLLDESLLLRENGSGTRKVFEDWASAFNVKKDDFAQVIEFGSSGGIVNLLQSLGVSFMYR SLVKPQLADQSLVTLPIKGLDISRPIAMVYAKNSFFENEYRQLL >gi|269838498|gb|ACXB01000013.1| GENE 77 80670 - 80855 291 61 aa, chain + ## HITS:1 COG:no KEGG:PEPE_0306 NR:ns ## KEGG: PEPE_0306 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 61 1 61 63 87 81.0 2e-16 MNGVTEFAEKIINFQKKNNLTDADVAFGTHLSVEKIHRIKENSYTPTDDDLKRITDFMKT K >gi|269838498|gb|ACXB01000013.1| GENE 78 80967 - 81488 544 173 aa, chain + ## HITS:1 COG:no KEGG:PEPE_0305 NR:ns ## KEGG: PEPE_0305 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 167 1 167 172 132 41.0 6e-30 MKKFEFYHPILTNQYSLDWLTKTKVKDIFALRSRPQIAQQEHRPADQELTDTVAYVNQVM RQVMNNRALVWGITRRADQQFIGIAGLTEFADHPQQATIQFTLSNETLQVAAMTEVLKRL IIFAFQELELSQINGAVDQENVSQIQVLKEAGFSLVKTTGTIQHYQLSSTNKF >gi|269838498|gb|ACXB01000013.1| GENE 79 81567 - 82325 734 252 aa, chain - ## HITS:1 COG:DR0899 KEGG:ns NR:ns ## COG: DR0899 COG0328 # Protein_GI_number: 15805924 # Func_class: L Replication, recombination and repair # Function: Ribonuclease HI # Organism: Deinococcus radiodurans # 68 228 27 167 179 96 37.0 4e-20 MAKQKYYVVKIGKQPGIYRTWAETEAQVKGFSGASYKSFGTLEEAEQWQAGKEVTEAKSA KKAIPQKQPQIPQKDPQVPTDRILLYTDGGSRNTGTVKGGHVRQADLAAWAYLLKKDDQE YSQSGGEFGATNNRMELTALWRGLETALAKVGKDAPITVISDSKYILNAITKKWLAGWQR RGWKKSTGDPVANQELWQQIAKLLPQFTDLQFLWTKGHATNQGNIFVDHKLNKMMDYMEE KGMVPVDDKLPK >gi|269838498|gb|ACXB01000013.1| GENE 80 82646 - 83953 1452 435 aa, chain - ## HITS:1 COG:BH0608 KEGG:ns NR:ns ## COG: BH0608 COG2252 # Protein_GI_number: 15613171 # Func_class: R General function prediction only # Function: Permeases # Organism: Bacillus halodurans # 6 434 3 433 434 409 56.0 1e-114 MKNIAKYFQFEQLKTNFKTEIIAGITTYISMVYIMFVNPNVLGASGMDKGAIFTATALAS AIGCFLMGILANYPIASAPALGINAFFAYSVVIGMKVPWQTALAGVFVASLIFLLITIFK LRELIINAIPADLKHAISAGIGMFVAFLGLSQGGLVVANPDTMVGLGSFTTPTTWITVFG LVITIILMVRRVPGAIFFGMVLTTLFGMVTGVIHAPTHLLAAAPSLKPTFLTAVSHVGDI NTLQLWVVVLTFLLVTFFDTAGTLVGLATQAGFMKDNKMPRVGKALMSDSTAMLTGSLLG TSPVGAFVESSAGIAVGGRSGFTVVITGIMFILGIFFSPLLTVVTSQVTAPALIIVGVLM AQQTREINWDRLEIAIPAFLIIIGMPLTYSISDGMALGIISYPIAMIAAKRGKEVHPLMY GLFFVFIGFIAILNV >gi|269838498|gb|ACXB01000013.1| GENE 81 84225 - 85232 424 335 aa, chain - ## HITS:1 COG:FN0776 KEGG:ns NR:ns ## COG: FN0776 COG2502 # Protein_GI_number: 19704111 # Func_class: E Amino acid transport and metabolism # Function: Asparagine synthetase A # Organism: Fusobacterium nucleatum # 9 335 3 327 327 382 56.0 1e-106 MHLIIPEKYEPKLSVRETQRAIRFIRETFQDEFGKEMNLSRVSAPMFVDHSTGLNDDLNG TESPVSFTMQDLPNHKIEIVHSLAKWKRMTLSRNDFDLHEGIYTNMNAIRKDEDLDNLHS IYVDQWDWEKIIAKEERTTAVLKEHVRKIFKVIKHMEHEVWYKYPQAVYHLPDKIHFVTT QELEDRWPEKSPEEREKAITQELGCVFLMKIGGPLKSGKRHDGRAPDYDDWNLNGDILFW YAPLQCVLELSSMGIRVDEDALRRQLKMANAEDRSQLPFHKALLNEELPYTIGGGIGQSR LCLLLLGKAHVGEVQASIWPQAMVEQCKNAGIQLL >gi|269838498|gb|ACXB01000013.1| GENE 82 85780 - 87693 2194 637 aa, chain - ## HITS:1 COG:L49741 KEGG:ns NR:ns ## COG: L49741 COG3590 # Protein_GI_number: 15673785 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted metalloendopeptidase # Organism: Lactococcus lactis # 3 637 2 627 627 543 44.0 1e-154 MTSSVKEDFYDAVNGEWLKTAKIPDDHSSTGGFMDLVDGVDKQLMKDFAEMRNHEVEPDT PELAEFIKFYEMAADFQQRDADGVAPLLPYLAQIEKLQNWDDVNANLKELFYNGVDLPVD IGIEPDLKGDGADKRNVLWAGGVSLILPDKTYYDADNPNGPQLMKIFTEMMNQLLVKIGK SPEEAHEIVEQAKRFDASLAPYRKNSEELSDVAKLYNPMEFTQFADKVQSIDVKKLVQEL LGTQPEQIIVTEPRFYENLNQVANDETFADFKSWAYVNMVRSLTGYLSEEFRQIGGMYGR ALSGQKVSMPQEKSAFYLARRTFSQVVGEYYGHRYFGEAAKKDVHEMVVAMINVYEKRLA NSDWLGEATKQKAITKLRSLKILVGYPDELKPVYKKLKTKTAAQGGSLVENVQNFSRIFL EDQLAKYGKKVDRSEWHMSADTVNAYYSPEGNLICFPAAILQAPFYSLKQTASQNYGGIG AVMAHEISHAFDPNGALFDEYGNMDNWWTQADLDHFHELSEAMVQEFDGLPFAGGKVNGK LVVTENVADDGGLSAALEATKDTDDANLEEFFTNWARIWRTKATPEREQLLLAIDVHAPS KLRANVQVQNFQEFYDTFDVEPGDGMYMAPEKRVQIW >gi|269838498|gb|ACXB01000013.1| GENE 83 87745 - 88716 1106 323 aa, chain - ## HITS:1 COG:SP1998 KEGG:ns NR:ns ## COG: SP1998 COG0252 # Protein_GI_number: 15901821 # Func_class: E Amino acid transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D # Organism: Streptococcus pneumoniae TIGR4 # 2 318 3 318 320 320 51.0 2e-87 MKKILALHTGGTISMSASNDKVKTNEENPLLDTQFINENIDLANEVVLNKPSEHITPEDM LVIKKRVKKAIDNDECDGIVITHGTDTLEETAYFLDLTIPSVIPIVLTGAMRSSNELGSD GVYNFQSAILTAASDEATGKGVLVVMNDEIHTARFVTKTHTTNVDTFRTPTFGPLGIVYK RDIRFFQALISQQVCDIDELVSGVYLVKAYAGIPGAIFETLDRPETKGIVIEGLGAGNLP VEVVEPIQKLIKKGIPVVMVSRCYNGLAEPIYDYVGGGIDLERMGVIFCQGLNGQKARIK LQVGLSNHMNGKEIARYMHDAVS >gi|269838498|gb|ACXB01000013.1| GENE 84 88825 - 89583 641 252 aa, chain + ## HITS:1 COG:CAC1317 KEGG:ns NR:ns ## COG: CAC1317 COG1226 # Protein_GI_number: 15894597 # Func_class: P Inorganic ion transport and metabolism # Function: Kef-type K+ transport systems, predicted NAD-binding component # Organism: Clostridium acetobutylicum # 49 244 47 242 256 115 35.0 7e-26 MTKTKINWQLSYDIGIAGIALFSFLIVVGSFLDPHAIRLSAPPLAHLLNVLLLLYTIDFF YRLASSRHWQRFLFDNTFDLLSLIPLHPAFAIFRIGRVWRLIRHHHLLWRFGLDGKLSKT VHRFVYSSGFLNLFTASMFILVLSSLMYSIVEKVPYPSALWWAITTATTVGYGDISPATN VGKFIAAFLMIAGVGFIGLLTSTITGFFTSQTTDANKDDFSRLFEKIDQLDHKVDHLQRE LNLERKKNRHKK >gi|269838498|gb|ACXB01000013.1| GENE 85 89638 - 90291 897 217 aa, chain - ## HITS:1 COG:SP1778 KEGG:ns NR:ns ## COG: SP1778 COG0580 # Protein_GI_number: 15901607 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) # Organism: Streptococcus pneumoniae TIGR4 # 1 210 1 215 222 158 48.0 7e-39 MRKYISELIGTFVLVFVGTAAVTIAHANVVGIGLAFGLAVTIMAYSVGAISGGHFNPAVT LGMWINKRISGADAVYYVIFQFIGAVLASGMVKYFLSAMGASTANLGQTDFTKISAFPAL VTEALVTFLFVLVILFVTSKQYGNASFAGLIIGLTLALMIIATLNLTGGSLNPARSFGPA ILVGGSALSHFWVYVVAPLVGGAVAAVVAKALGSETE >gi|269838498|gb|ACXB01000013.1| GENE 86 90463 - 90885 495 140 aa, chain + ## HITS:1 COG:no KEGG:PEPE_0298 NR:ns ## KEGG: PEPE_0298 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 139 1 139 139 226 84.0 2e-58 MANFDVNIIDQPTAKAMLVEFKSQRQDNVPVLKHPGHYILPDYKLTRQRKAFKIRKHTYL TKKFRSYVALDSANGHTLWMRNFGSLSEAVFWLETGMKIGDTDTDARFSYKKWKAAHEED IEKLKDELRAKSKAKEAKKG >gi|269838498|gb|ACXB01000013.1| GENE 87 91117 - 91455 327 112 aa, chain + ## HITS:1 COG:no KEGG:PEPE_0297 NR:ns ## KEGG: PEPE_0297 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 112 1 112 112 119 61.0 5e-26 MSTENKFLSSLSYFSIFFLPIIFPIIVMVLTSNVQYAPAHRHAITAFWLHLIPVILLPLG FGLGILATAHSFTGNHFPTTSLVLFLIVGLMGIAALALFIYNIYKGVKIWVE >gi|269838498|gb|ACXB01000013.1| GENE 88 92435 - 93523 641 362 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0296 NR:ns ## KEGG: PEPE_0296 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 362 1 349 353 197 34.0 5e-49 MKFCLNCGEELPEKAHFCPNCGAKIETASSESSRLSRAELHKNRQETPLDDLKESADTKP KEEPTISRARRKSSASTDLKEGALTTLQWIGGNWLTALLVLLVIGTFFYWLSKMVGVVLL VVAVVAAFFYAQRVGAGDRSADQAVKATLQKGGEAGRQVWQKLQMALLKKRGKKDFTTPT AEQNSDPTEAEAAEATAEPKSMKEGASSGINNPKPTTGTDVRKGKQRWTLKNKFIMGIAI ITGMAAYWAPFASAPTAGYNVKTSLMSILKTLGDDQLAHFLWVIPALLLLGALLQFHWLT KWASYLNLLWYGMMFFLIYQNEAQLVGLGNMFNGVRWGWGGYLIVACSIILLLMHSRTRT RK >gi|269838498|gb|ACXB01000013.1| GENE 89 93714 - 94691 1053 325 aa, chain - ## HITS:1 COG:BS_prs KEGG:ns NR:ns ## COG: BS_prs COG0462 # Protein_GI_number: 16077119 # Func_class: F Nucleotide transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoribosylpyrophosphate synthetase # Organism: Bacillus subtilis # 1 318 1 317 317 450 72.0 1e-126 MSEHYSDPKLKIFALNSNKPLAEKIAKAVGVELGKTSVDRFRDGEIRINIEESIRGDEVY IIQSTSAPVNDNLMEMLIMIDALKRASAKTINIVIPYYGYARQDRKARSREPITAKLVAN MIERAGATRIIALDLHAAQIQGFFDIPLDHLMGAPLLADHFIERGLNENAVVVSPDHGGV TRARKLAEFLKAPIAIIDKRRPRANVAEVMNIIGEVKGKRCIMIDDMIDTAGTITLGAQA LIDAGATEVYASCTHPVLSGPAIERIQNSPIKELIVTDSIQLPEEKKIDKITSISVGPLI GEAIRLIHEDKPVSPLFNNRFSTEH >gi|269838498|gb|ACXB01000013.1| GENE 90 94987 - 96489 1245 500 aa, chain + ## HITS:1 COG:SP2186 KEGG:ns NR:ns ## COG: SP2186 COG0554 # Protein_GI_number: 15901993 # Func_class: C Energy production and conversion # Function: Glycerol kinase # Organism: Streptococcus pneumoniae TIGR4 # 2 500 3 502 502 554 52.0 1e-157 MKQKYILSIDAGTSVVKTVIFNHASSEVVSFSRELSQESPHQGWYEQSPEDIWKKVYSSM ANALIVSGISPKQIAGIGITNQRETTIIWNKRTGKPIYNAIMWRSRQTNEITDSWNLSNY KDLVKNSTGLVLDSYFSASKIRWILDHVPHAQQQAENGELLFGTVETWLLWKLTNGHAHV TDYTNASRTMFFNIRTLDWDEELLKALNIPIQLMPEVRSNSEIFGYTIGSAFFNCSVPIA GMIGDQQSSLVGQLAFHRGAISATYGTGAFITVNTGENMVHSENNLLTTVSFGLDKKIYY GLEGNIFVAGTAVTWLQDSLEMIKDPLHSAAVASQSTNDNLYVVTSFNGMGAPYWDEKVQ GAVFGMTDKTTKADFVRATLQSIAYRSKDVILAMQEDMQAELQTVYTDGSMAKNDFLMQF EADILGVDVNRSETTDIKALGVAFLAGLAVGFWEDLTEIKKLRHPITKFQPVYTAKKRER LYRRWQRAVLASQIFSKENE >gi|269838498|gb|ACXB01000013.1| GENE 91 96555 - 97244 684 229 aa, chain - ## HITS:1 COG:no KEGG:LSA1836 NR:ns ## KEGG: LSA1836 # Name: not_defined # Def: putative metal ion ABC transporter, membrane-spanning subunit # Organism: L.sakei # Pathway: not_defined # 6 229 8 231 231 256 61.0 6e-67 MNKQMTGITFLIAIVIFLVFLTFVTALQGQHFLLFSFICLIASVIPFYWKFESSALKARE VVFLAVLIAIAAVSRVPFAIIPNVQPTSFVIITAGAVLGPESGFIIGSTVALTSNMFLGQ GPWTPWQMFAWGMMGMTAGLLKNTPLVNHKYAMVLFGFVWGFVFGWIMDLWYLVAYINPL NFKAMLLTFLGTGYFDLLHALSNVFFLLIFYNSWKKTITRFKIKYGLLD >gi|269838498|gb|ACXB01000013.1| GENE 92 97237 - 98883 1548 548 aa, chain - ## HITS:1 COG:MA1747 KEGG:ns NR:ns ## COG: MA1747 COG1122 # Protein_GI_number: 20090599 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, ATPase component # Organism: Methanosarcina acetivorans str.C2A # 4 508 11 530 614 254 30.0 3e-67 MEILQVKDLFFKYALAKRDNLKNINLNVNQGDFMLIIGDSGSGKTTLLKQLKKELWPVGE RRGAVKFKHQSLSTLSPIESARRIGMVFQNPDDQIVMDTVIQELAFSLENVGEDSENIQR KIAEMVSFFGFQDILYASVNELSGGQKQLVNLAAVLILQPELLLLDEPTAQLDPIATKEF ISLLQRVHDELGVTIMISEHQLDELLPLANRLCIMEEGKLTFTGNVEEGVQHAVQDQKMA EFIPEVPRLFLAENLIATSSKDTVPLTVVAGKRFIDYHGIKFQQRKRIIPSPSGDPALKI EHVDFKYGRNSPLILNDLGLTVQRGEWLSIVGRNGTGKSTLLKCLMGMEKARRGKITVFN RKLAKWESGQLYRMVGYLSQNPADHFSYDTVLEELVNRAKQLGSAEPQEIAESMLTRLKI NSLKNKNPHDTSGGEQQLIALGIILIAHPQILLLDEPTKGLDPLRKRSLGKLLQKLQKAG MTIITTSHDMSFSATYATRCAMLFDGKITSTADPYSFFAKNFFYTTPINRMVRDQLPTAL VWRELSHE >gi|269838498|gb|ACXB01000013.1| GENE 93 98865 - 99788 441 307 aa, chain - ## HITS:1 COG:SA2019 KEGG:ns NR:ns ## COG: SA2019 COG0619 # Protein_GI_number: 15927800 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, permease component CbiQ and related transporters # Organism: Staphylococcus aureus N315 # 22 251 20 260 268 64 24.0 3e-10 MKEQPLKSNTNQRNSTLEFERLNPSIIFAYYLLLIMITVLFNSPIILMIEFTAVLGLLIQ VSDMMSALKTLKATGIMALFIIIINPLTNHNGAHLLTSFHGLTITKEALLYGFLMALSLT NVILLFASYNKLMTNNKFMFLFGKILPRLSLLTIIVMRFIPLFLKRFKNISQIQKLRGIN VDQGSVRQRTKALMQLMQVLLVDACYNAFQTADSMTARGFGSTKRSNYQRYRMTRRDITY AGILASGGIVLIGEAIRRIGVIQIYPSLQMNWGTWQEEGLLIGTVALICGLPMVVELKEE LWWKFYK >gi|269838498|gb|ACXB01000013.1| GENE 94 100057 - 101163 883 368 aa, chain + ## HITS:1 COG:BH3679 KEGG:ns NR:ns ## COG: BH3679 COG4753 # Protein_GI_number: 15616241 # Func_class: T Signal transduction mechanisms # Function: Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain # Organism: Bacillus halodurans # 110 272 93 254 257 90 31.0 5e-18 MLSALNQTHDDRYTPDSYTKLANSLNAFYEITQIDVLFYSFTGVLVYRGDIITDNKVVQK TLDPEHFGKSIIFPIILNNQVWGFTMCSSAKSSNHRIQVSKEYLSNLFNSHFANRQDLTA QVLEPLTDEQLTKINYLSTLLQLKSSANNVLPIATAEDPQVRTSTEKFEAIRSIKEATNY ICENLTSQLTLSTVAEHVFLSPSYLSRIFKKYMDINFINYINQQKIAHAQRELILSRKPI NLISNIAGFSQTSYFTKIFKKITGTTPSKYRKENAAISKIYTIHHTLDWPENASVFDVSK AFFTKQNLDYYYESANGYLYVNSIGDLTDANEKSGWIFTVDGRQPTNSADLISTKGVSVV QWMYVDFR >gi|269838498|gb|ACXB01000013.1| GENE 95 101266 - 102459 991 397 aa, chain - ## HITS:1 COG:CAC0462 KEGG:ns NR:ns ## COG: CAC0462 COG3007 # Protein_GI_number: 15893753 # Func_class: S Function unknown # Function: Uncharacterized paraquat-inducible protein B # Organism: Clostridium acetobutylicum # 1 397 1 398 398 339 46.0 5e-93 MKVKPKIVGNVIKSVNPYGCRQAVLNQINYVKSKGKYAGPKKVLILGGSSSYGLATRITT AFGSGADTINVAYEREPKSPEQLGSAGWYNSIFFKQFAEQAGLIAQNFIGDAYSDIMKQR VIEYIKNEFGGKIDLLVYSLAAPKRNDPRSEKVWRSVLKPIDQSMTGENIDLEHERLFTE TIAPATPEEIQGTAKVMGGEDWEWWIQALKEAHVLADDFKTVLYSYIGPQMTYPFYHEGT LGVAKTQAERSAERINQELKPLQGRALVCVSTVVTTKASVVIPIMPKYMIALYKVMTDEA THETPIMHKDRVYREMIYGKHPIYDPKGRLRADHYELRPSTQAKTAALYQQINADNFKSP MTGYAQFRKEFLNTAGFAVDGLENDEFEFSDLLNLKP >gi|269838498|gb|ACXB01000013.1| GENE 96 102645 - 103433 284 262 aa, chain - ## HITS:1 COG:lin1914 KEGG:ns NR:ns ## COG: lin1914 COG2365 # Protein_GI_number: 16800980 # Func_class: T Signal transduction mechanisms # Function: Protein tyrosine/serine phosphatase # Organism: Listeria innocua # 7 261 46 297 298 135 30.0 8e-32 MCSKRILNLSGGFNFRDLGGYPAANAHRVKWCKLVRSGYLSDLTDQDLQKLVDYGINLVI DLRSKSEVQSFPDRLNSHIKYINLPIFQDDQTESGASLKRIYQLYARSNQGGFQKMMRSY RKLITDPHAQQAYHHFFELLEKYGRNGGILFHCSAGKDRTGMCTMLLLAALGVDDKVIRE DYLLTNPASKARIEWRRNEAKKMHLGRNFVQSVEDLASVRDEYYDQLVGMLNYQYGGIPQ YLKNEIQLTKAQRQNLRKIYLD >gi|269838498|gb|ACXB01000013.1| GENE 97 103460 - 104050 275 196 aa, chain - ## HITS:1 COG:BS_yqiG KEGG:ns NR:ns ## COG: BS_yqiG COG1902 # Protein_GI_number: 16079477 # Func_class: C Energy production and conversion # Function: NADH:flavin oxidoreductases, Old Yellow Enzyme family # Organism: Bacillus subtilis # 1 173 159 335 372 119 38.0 5e-27 MAAGFDGVEIHGANGFLPQQFLSSNANHRQDQFGGSLANRFRFVKLLIQRLQATVSQFGN QTFVLGYRLSPEEYEDGGLKLGETLQLAQLLEQLGIDYLSLSLRDFMVTPRTFDTQVPIV KLFNAAVDLPIMVAGQINDANKLKQAQELSSLIGIGRPLVKDPNWLTKINSGKSTANGLA LTASEIGVAQSVYQVL >gi|269838498|gb|ACXB01000013.1| GENE 98 104122 - 104484 188 120 aa, chain - ## HITS:1 COG:SA0817 KEGG:ns NR:ns ## COG: SA0817 COG1902 # Protein_GI_number: 15926545 # Func_class: C Energy production and conversion # Function: NADH:flavin oxidoreductases, Old Yellow Enzyme family # Organism: Staphylococcus aureus N315 # 4 116 18 130 375 76 36.0 1e-14 MDKLNLKNRFVLPPLDMRMALFDGTVSLNDLEFHRQRSQSVGMDVVGSAFISTEGNTALG SISISRDEDVEGLSKLAKVIQRNHAKAIIQLVHAGRLASPQAIFEKKHLLPARLQIPGPS >gi|269838498|gb|ACXB01000013.1| GENE 99 104498 - 104842 515 114 aa, chain - ## HITS:1 COG:lin1108 KEGG:ns NR:ns ## COG: lin1108 COG4810 # Protein_GI_number: 16800177 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine utilization protein # Organism: Listeria innocua # 3 114 5 116 116 147 67.0 5e-36 MIEDKARMIQEYVPGKQVTLAHIVANPTEDIYEKLGIQTPKNALGILTITPSEASIIAGD VATKSSNVTLGFIDRFSGSVVVVGEVSEVESALRKVIKTLHELLGFDIPTITRT >gi|269838498|gb|ACXB01000013.1| GENE 100 104858 - 106045 1053 395 aa, chain - ## HITS:1 COG:BS_ackA KEGG:ns NR:ns ## COG: BS_ackA COG0282 # Protein_GI_number: 16079999 # Func_class: C Energy production and conversion # Function: Acetate kinase # Organism: Bacillus subtilis # 4 393 3 395 395 419 51.0 1e-117 MSKKILSINSGSSSLKFKLYQMPEEEVLASGQVDRIGIANSTFDYTVHGKATQNRVPMKS HDEAIKAVINMLLTSGVIEDKSEIVGVGHRVSHGGRYYDRPVLVNEDVKKRIAELSVLSP LHNPVNLIGIKNFEKLLPAAQEVAVFDTSFHHTMPEEAYMYALPYEYYEKYGIRRYGFHG PSHEYVSERATELFGEERTSKMITCHLGNGSSLCAIKDGKSINTSMGFTPLAGLVMGSRS GDVDPEILPFIEEELHLGSEEVREMLNKCSGLLGLSGVSSDVRDVEKAANEGNRRAQLAI KVFVHQIQHYIGAYAADLNGLDTLVFTAGIGEHSITMRKAICEKLGYLGVKIDDHKNQNG ELSIEAADSKIKVAVIPTDEEIIIARDVMRVAEFN >gi|269838498|gb|ACXB01000013.1| GENE 101 106069 - 107190 971 373 aa, chain - ## HITS:1 COG:lin1130 KEGG:ns NR:ns ## COG: lin1130 COG1454 # Protein_GI_number: 16800199 # Func_class: C Energy production and conversion # Function: Alcohol dehydrogenase, class IV # Organism: Listeria innocua # 1 372 1 372 372 325 46.0 9e-89 MERIAIPTQIYSGTDSLKQLGKLNQEHILMVCDAFLPGTPTLDEIKGNINSSNQVTVFSD VKPDPPLKNIMQGVNEYLKNVPTVMIGIGGGSAIDTGKAIRFFGEKLSGKCIKEFIAIPT TSGTGSEVTNTAVISDPENHQKFPIMEDYLIPDVALLDPQLVMTAPNSVTAFSGLDVLTH ALEAVVAQDANTITDALAEKSASVIINNLVECYQHGDNEAARKIVHEASCAAGAAFNNAG LGICHSIAHQLGANFHIPHGLANAMLLPYVVEYNATHSQLALHKYAMVARKAGLASSGMG DRVAVRKLQSQIKQMARKMNCPATLTAFGIDTKAALEATDQIVASAKLDGTFPGNPVVPT DEDLAEIYKKIIK >gi|269838498|gb|ACXB01000013.1| GENE 102 107194 - 108627 1826 477 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148544941|ref|YP_001272311.1| 50S ribosomal protein L29P [Lactobacillus reuteri DSM 20016] # 1 475 1 476 477 707 73 0.0 MEIQNLEEDIRRILSEELKKSGTSQTASTSDAGQNGIFKTVDEAIAAAKAAEDVYIDKTL AFREKVLTAIREGFRPYIEKMAKDIKDETGMGTVEAKIAKLNNALYNTPGTEILQPEAET GDGGLVMYEYAPFGVIGAVGPSTNPSETVIANAIMMLAGGNTLYFGAHPGAKKITRWTIE KLNELVYEATGMKNLVVSIEEPSIESVQEMMQHPDIAMLSITGGPAVVHQALVSGKKAVG AGAGNPPAIVDATANVALAAHNIVDSASFDNNILCTAEKEVVVESSVKDELIKKMQEEGA FLVTNASDIDKLAEMTIGKNGAPDRQFVGKDATYILDKAGIAYTGTPKLIILEAQKDHPL VTTEMLMPIVPVVSCPTFDQVLATAVEVEQGLHHTASIHSENLPNINRAAHRMNTSIFVV NGATYVGTGVGANGAHAGASALTIATPTGEGTATAKTFTRRRRLNSPEAFSLRSWEA >gi|269838498|gb|ACXB01000013.1| GENE 103 108629 - 109108 554 159 aa, chain - ## HITS:1 COG:STM2050_2 KEGG:ns NR:ns ## COG: STM2050_2 COG3193 # Protein_GI_number: 16765380 # Func_class: R General function prediction only # Function: Uncharacterized protein, possibly involved in utilization of glycolate and propanediol # Organism: Salmonella typhimurium LT2 # 30 151 23 144 153 93 47.0 1e-19 MNEEQINNIVKEIITKQGDQLGNLFDRQKMQRVFDAAVAKANELNVGVTMCIMDAATVVQ MLYHMPNANLVSSELAPKKAWSAIAMKEPTKDISKDIQPGAPLYQMETMLNGKLVSFPGG IPLEIGGKIVGAIGISGGLVEEDQAICEAAVEEFMKESK >gi|269838498|gb|ACXB01000013.1| GENE 104 109218 - 109607 220 129 aa, chain - ## HITS:1 COG:lin1128_1 KEGG:ns NR:ns ## COG: lin1128_1 COG2096 # Protein_GI_number: 16800197 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 122 64 184 190 117 53.0 5e-27 MFFLQGEIATLDTQKFLKNSVTIEEQDVLDLEKVIDEYTVKLPPVKSFILPGSSLAGAQL HVCRTVCRRAERRFVQFASETTVRPVLEKYVNRLSDFFYILARSEDYEDYLAKVTEEVIK RYRAYFTEN >gi|269838498|gb|ACXB01000013.1| GENE 105 109625 - 109795 232 56 aa, chain - ## HITS:1 COG:lin1128_1 KEGG:ns NR:ns ## COG: lin1128_1 COG2096 # Protein_GI_number: 16800197 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 54 1 54 190 68 64.0 3e-12 MPIYTKGGDKGSTSLYDGKRVHKDSLRVETYGTFDELNANISVADKLCLSKKIKKS >gi|269838498|gb|ACXB01000013.1| GENE 106 109810 - 110076 285 88 aa, chain - ## HITS:1 COG:lin1127 KEGG:ns NR:ns ## COG: lin1127 COG4576 # Protein_GI_number: 16800196 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; C Energy production and conversion # Function: Carbon dioxide concentrating mechanism/carboxysome shell protein # Organism: Listeria innocua # 1 88 3 87 87 86 61.0 9e-18 MAKVVGSVVSTQKDKSLVGRKLMIVRAIDSQGQPVRPEEVAVDSVGAGIGEYVLLVRGAG ARIANHADKNFRDVSDCAIVGIIDSFDK >gi|269838498|gb|ACXB01000013.1| GENE 107 110061 - 110567 471 168 aa, chain - ## HITS:1 COG:no KEGG:LVIS_1607 NR:ns ## KEGG: LVIS_1607 # Name: not_defined # Def: propanediol utilization protein # Organism: L.brevis # Pathway: not_defined # 1 167 7 173 173 167 47.0 1e-40 MDPIVAQVIEKLKQRNAQSAEITYSKSNDVPSTGIFVDNANLVLKQVSIELIADLFHLDQ SNRWVTWILQGLDYDVNFQLNVSYHALNFIPLVMIRDWPIMFVVNGEHPVYAFYPTIITR EMLAGIPDKAVVVVTNVQNITAGAEEISSQKDLKIQVRTDENCIWQKL >gi|269838498|gb|ACXB01000013.1| GENE 108 110590 - 111216 540 208 aa, chain - ## HITS:1 COG:STM2047 KEGG:ns NR:ns ## COG: STM2047 COG4869 # Protein_GI_number: 16765377 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Propanediol utilization protein # Organism: Salmonella typhimurium LT2 # 1 206 1 207 210 182 48.0 5e-46 MDEEQLRQLIRKIIKEETDPNRIRIGVSNHHIHLTDEDFATLFPGQEMTVYKPLYQHEEF ASNQFADIVGPQGTIKHVRILGPNRAHSQVEIARSETFELGIDAPIRLSGHLEGAPSVKL VTKDGEVEVQGVIVAKRHIHMSLEDAARFGVKLGDTVSVEINSDERRTIFDDVICRPRKD FLLEMHIDTDEANAANVNANTFGRIIKK >gi|269838498|gb|ACXB01000013.1| GENE 109 111247 - 111522 442 91 aa, chain - ## HITS:1 COG:lin1123 KEGG:ns NR:ns ## COG: lin1123 COG4577 # Protein_GI_number: 16800192 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; C Energy production and conversion # Function: Carbon dioxide concentrating mechanism/carboxysome shell protein # Organism: Listeria innocua # 1 88 1 88 91 102 77.0 1e-22 MNNALGLIETKGLVASIEAADAMVKAANVQMIGQEKIGSGLVTIMVRGDVGAVKASVDAG VAAAENIGEVVSSYVIPRPHAEVERILPSTK >gi|269838498|gb|ACXB01000013.1| GENE 110 111550 - 112023 494 157 aa, chain - ## HITS:1 COG:lin1122 KEGG:ns NR:ns ## COG: lin1122 COG4577 # Protein_GI_number: 16800191 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; C Energy production and conversion # Function: Carbon dioxide concentrating mechanism/carboxysome shell protein # Organism: Listeria innocua # 2 81 3 84 145 57 35.0 9e-09 MKTLGYLEVKGLTNAIVSADKMLKTADVELKNISNTRGSGWVTVAIVGDVAAVSVAIAMA KEMMGENYVSSTVLANPAEGIEKLNRTDLLLEPTVRKANEANSEPLNVEPTRPTEKLEPQ KPAKSEKSKATSKTKKESNSKKETNSSTKKRKKQSKK >gi|269838498|gb|ACXB01000013.1| GENE 111 112024 - 112380 339 118 aa, chain - ## HITS:1 COG:no KEGG:LVIS_1611 NR:ns ## KEGG: LVIS_1611 # Name: not_defined # Def: diol dehydratase medium subunit # Organism: L.brevis # Pathway: not_defined # 2 114 4 117 117 118 57.0 7e-26 MSMEKPSIVIAMREDNEDTTELTQLLYGIEEEEIPFSFKTMAFDNPVERAYQGALFSRLS VGIAFDDKSVIVHYKNLPKSEPLFKVEKDNSVNLRILGANAARLVKGVPFKRLNKVVN >gi|269838498|gb|ACXB01000013.1| GENE 112 112381 - 114216 2034 611 aa, chain - ## HITS:1 COG:no KEGG:LVIS_1612 NR:ns ## KEGG: LVIS_1612 # Name: not_defined # Def: propanediol utilization ATPase # Organism: L.brevis # Pathway: not_defined # 1 608 1 608 616 937 82.0 0 MKRVIGVDIGNSSTEVALAEVSNRGDVKFINSGISATTGIKGTKQNLIGIKKSVAQVLAK TQLTLDDIDLIRINEATPVIGDVAMETISETIITESTMIGHNPNTPGGVGIGSGYTVNLL QLLQEKDRQKKYIVVVPKEVDFADAARLINLYSKAGYQITAAILQNDDGVLIDNRLDHKI PIVDEVALIEKVPLGMLAAVEVADKGKVISQLSNPYGIATLFGLNSDETKNIVPVSRALI GNRSAVVIKTPAGDVKARVIPAGRINIQGDHGSESVGVSAGADAIMDKITSFDRITNITG EAGTNVGGMLEKVRQTMADLTGKQNKEIAIQDLLAVDTSVPIKVQGGLAGEFSTEQAVGI AAMVKSDRLQMQRIADLIQNDLHVPVEIGGAEAEAAILGALTTPGTTKPIAILDLGAGST DASIIDQNNQITAIHLAGAGDMTTMMINSELGINDTYLAEDIKKYPLAKVENLFQIRHED GTVQFFDEPLPADIFARVVVIKPNGYIPVPGNLSIEKIKHVRQSAKRKVFVTNAQRALRH VSPTGNIRDIPFVVIVGGSALDFEIPQLVTDALSHYNLVAGRGNIRSIEGPRNAVATGLI LSYANQLRSVM >gi|269838498|gb|ACXB01000013.1| GENE 113 114228 - 114758 480 176 aa, chain - ## HITS:1 COG:lin1119 KEGG:ns NR:ns ## COG: lin1119 COG4910 # Protein_GI_number: 16800188 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Propanediol dehydratase, small subunit # Organism: Listeria innocua # 28 176 23 170 170 162 56.0 4e-40 MSEIDDLVAKIMSQMGDQAPKNTSKTRTSTPSQMATHETPLTTKDYPLYSKHPELVHSPS GSNLDDLNIDNVLKGAVKPKDLRITAETLRLQGQVAVDSGRDAIQKNFQRAAELTAIPDE RLLEMYNALRPYRSTKQELLDIAKELRDQYNAKICADWFEEAAEFYETRKKLKGDN >gi|269838498|gb|ACXB01000013.1| GENE 114 114770 - 115498 681 242 aa, chain - ## HITS:1 COG:mll6722 KEGG:ns NR:ns ## COG: mll6722 COG4909 # Protein_GI_number: 13475607 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Propanediol dehydratase, large subunit # Organism: Mesorhizobium loti # 65 239 574 749 756 125 44.0 5e-29 MSQTIDESILRKIIREVLAENQNMDTPISFKDESTSSTPNTQPKTESEDRSTISRPVTEK KLDWFKHVGKAKPGFSKDEVVIGVAPAFAEVLEKNMTGLPHKDILRQVIAGIEEEGLKAR VVKIYRTSDVSFCGAEADKLSGSGIAVAIQSKGTAIIHQKDQEPLSNLELFPQAPVLDLD TYRAIGKNAAEYAKGMSPNPVPTVNDQMARVAYQAISALMHIKETKQVEPGRPAEEIEVN FD >gi|269838498|gb|ACXB01000013.1| GENE 115 115517 - 117193 1605 558 aa, chain - ## HITS:1 COG:lin1117 KEGG:ns NR:ns ## COG: lin1117 COG4909 # Protein_GI_number: 16800186 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Propanediol dehydratase, large subunit # Organism: Listeria innocua # 3 556 2 553 554 806 71.0 0 MKRQKRFEELEKRPIHEDGFIKEWPDEGLVAMMGPNDPKPSIKIENGVVTELDEKKRADF DLIDLYIAKYGIKLENAEKVMAMDSTQIAHMLVDPNVSRKDIIAITTAMTPAKAEEVISK LNFGEMIMATQKMRPRRTPATQSHVTNIRDNPVLIAADAADAALRGFPEQETTTAVARYA PLNAISLMVGAQTGRPGVLTQCSVEEATELNLGMRGFTGYAETISVYGTDRVFTDGDDTP WSKGFLASCYASRGLKMRFTSGSGSEAMMGYTEGKSMLYLEARCIFITKASGVQGLQNGG VSCIGIPGAVPSGIRSVMGENLLCMMLDLECASGNDQAFSHSDMRRTERLLGQFIAGTDY VSSGYSSTPNYDNTFAGSNTDAMDYDDYYIMERDLMINGGIHPVSEEEVIKGRNKAARAL QAVFDELGLPKVTDEEVEAATYANTSKDMPERNMVEDMKAAQELLDRGITAVDIIKALYT RGFKDVAEAVLNLQKQKVCGDFLQTSSIFDKDWNIISAVNDANDYQGPGTGYRLDEDKEE WERIKNVPFAIDPGNMKF >gi|269838498|gb|ACXB01000013.1| GENE 116 117215 - 117937 660 240 aa, chain - ## HITS:1 COG:lin1116 KEGG:ns NR:ns ## COG: lin1116 COG4816 # Protein_GI_number: 16800185 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine utilization protein # Organism: Listeria innocua # 13 239 44 267 267 274 66.0 1e-73 MNNFFNSTSTVPEYVGSSEIGDTIGMCIPSVDAMLLDELHVSTREYSVIGILSSRTGAGP QIMAMDEAVKATNTEVLDIELPRDTKGGAGHGVLILIGGSDPSDVRQAINVALDNLSRTF GDVYNTPAGHLELQFTASASGAVHTAFGAPLGKAYGLICGAPSGIGVVMADTAIKTAGVD VLSFASPSHGTSFSNEGIVHISGDSGAVRQAVMAGRAVGLKLLGQLAGTEPKNDFPSYIK >gi|269838498|gb|ACXB01000013.1| GENE 117 117994 - 118272 510 92 aa, chain - ## HITS:1 COG:lin1123 KEGG:ns NR:ns ## COG: lin1123 COG4577 # Protein_GI_number: 16800192 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; C Energy production and conversion # Function: Carbon dioxide concentrating mechanism/carboxysome shell protein # Organism: Listeria innocua # 3 90 2 89 91 100 75.0 5e-22 MEHEALGLIETKGLVASIEAADAMVKAANVDLIGQEKIGHGLVTVMVRGDVGAVKASVDA GVTAAEEIGEVLSSYVIPRPHADVENILPKKE >gi|269838498|gb|ACXB01000013.1| GENE 118 118591 - 119046 534 151 aa, chain - ## HITS:1 COG:lin1109 KEGG:ns NR:ns ## COG: lin1109 COG4917 # Protein_GI_number: 16800178 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine utilization protein # Organism: Listeria innocua # 1 137 5 141 143 135 41.0 3e-32 MFIGPIGCGKTTLLQRINHLEMHYNKTQSIEFYNNIIDTPGEYIEHRRMYTNLATTAMDA GVIVLMQSAVDSRIVFPEAFGTMFARPLVGVVTKIDLAEDDAQINLVKQRLKSAGAKRVF TLSAVANQNVNDLVDFLRKTREQEMEANKPD >gi|269838498|gb|ACXB01000013.1| GENE 119 119060 - 119518 483 152 aa, chain - ## HITS:1 COG:no KEGG:LVIS_1981 NR:ns ## KEGG: LVIS_1981 # Name: not_defined # Def: hypothetical protein # Organism: L.brevis # Pathway: not_defined # 63 147 148 230 235 66 48.0 2e-10 MKRKWFPLLVAVFLIIGVAIGFGGILHSKNSNNDDLGFSNAKVDPDKVQVTVETDLKRPK KNQQILFDKQIKYQKGMTAFSALKKVAGKQVGYQNGATVYVNRIGKYTENDVHSGTGWKY YVNNGKDIAKAANLKTLKAGDHLYWRFVDGYK >gi|269838498|gb|ACXB01000013.1| GENE 120 119535 - 120626 1134 363 aa, chain - ## HITS:1 COG:no KEGG:LVIS_1982 NR:ns ## KEGG: LVIS_1982 # Name: not_defined # Def: hypothetical protein # Organism: L.brevis # Pathway: not_defined # 22 363 24 349 349 219 50.0 1e-55 MLKSIKYSAAVAAVALLLGGTVSASAASFTTASKTEQKDQTEKVFTYAKNNLLKKNQDLA KDMDSGKTSKAKLFDKKAYPGVGASDGYQDLLVGLKRQGYKFTDHDKQLVKKNLIVSKKS TPKQLANAIIGLQAVGFNPKAYKTNGEKLNLVKMLYQNKKVLNKKTTTNEQAQVLVALKS NKKFKAPKKAKFTVKKLSNKLAKKQIKVTNHKSKNYKNDGGWAYNDDAASVDADTTAMTL NALEMSKSKNKTVKKAITKGRHYLKVNVNKDGGFGMDGKSNANSNAEVITALSMNKKAFK KINQVKLNDKQENSTLKNTLSFVKEDGSIKDAYDQTMGVGQVLVALSAYHNGKYANNGVY QFK >gi|269838498|gb|ACXB01000013.1| GENE 121 120871 - 121845 646 324 aa, chain - ## HITS:1 COG:CAC0360 KEGG:ns NR:ns ## COG: CAC0360 COG1609 # Protein_GI_number: 15893651 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Clostridium acetobutylicum # 4 324 2 324 328 137 27.0 3e-32 MSKVTIKELARITGWSVATISRALNDKDGISVGKKEKIKKLAKELGYHPNQNARSIKLGK SKTIGVIVSSLSDVFSADVMSGIEAAANERNFKMLFVGVDEDFQREREAIDNYLESQVDG LIIAPCMTPFDYTKLLQGTPTVFIDRDPSDATVKFNSVCLDNVNGAETLVTDLINKGARR IGLLNTVVSYSASLRERGYRQALKMAGIKFDPGTVVYSWNNKKNVEQMTRQLVVNQHCDA LFLADNSILIPALRKCQEYDYQKIVFGVVDDCDWYDLLKFPVSSIKQPSYEMGIEALKLL AKLIEGKIKNSSSIRLDGTLISRK >gi|269838498|gb|ACXB01000013.1| GENE 122 121873 - 123996 1696 707 aa, chain - ## HITS:1 COG:BH2223 KEGG:ns NR:ns ## COG: BH2223 COG3345 # Protein_GI_number: 15614786 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-galactosidase # Organism: Bacillus halodurans # 88 616 125 633 748 98 23.0 4e-20 MKQIEVQSKLGQVNILIKSEKVYLAYLGEKRSLDEEWLKIVSNNELASFKLTEINITGEE DHLHVMGKGAKQSGTAGGENLIYLSHTIEENDEGKLLTIVQQHQKLRLQVKTYFQLYDES TVIRVWKKVINCGEDPIGIEEISSLSLSGILQQDFYPGDYTKNILLYLAHNGWTAEAQWT KKYLSEYGLVYMADGMKEEASSKRISVTNNSSWSCSEYSPQGILHNKKTNQTAIWQIENN GAWHFEIEDTDNGGLLNIQLSGPEEYDNNWWKNLSAGESFTSVIVAYTQTNGNFENGIAE MTKYRRVTRRANDDNQKLPVIFNDYMNGLMGNPTTENEIPLIDAAYKIGAEYYVIDCGWY DSGDWWDTVGEWKQSLVRFPNGITELMDYIREKGMVPGLWLEIEVMGINAKLAKELPDNW FFMRHGKRVKDIGRYHLDFRNPAVREYATSVVDRLVNEYHLGYIKMDYNTPTGIGTDLDS DSMGEGLLEHNRAYLKWIDSIFEKYPELIIENCGSGGLRHDHAMLSRHSIQSLTDQTDYV RNGAIASVGASVMTPEQCAVWSYPLKRGDEEEVIYNMINSMLGRIHQSGYLNLLTNKRLD LVSEAIAVYKGYRSKINHALPIWPSGLGRIDDSNISYGLQVDDEILLAVEHSTGKPAVHL DLTPYGNYSSVEMIYPHNHDMKYNLVNGVLSLSFDHDNMARLFRLKK >gi|269838498|gb|ACXB01000013.1| GENE 123 124013 - 125365 755 450 aa, chain - ## HITS:1 COG:STM0042 KEGG:ns NR:ns ## COG: STM0042 COG2211 # Protein_GI_number: 16763432 # Func_class: G Carbohydrate transport and metabolism # Function: Na+/melibiose symporter and related transporters # Organism: Salmonella typhimurium LT2 # 5 448 7 452 457 416 49.0 1e-116 MESVDSKPKDSDAKLSFIERFSYGQLDAAGQLVFCVISSYLLYFYTDVVQLPVAAAGLIL LVARLFDGIDAPVWGTLIDLTHSKYGRARPYLLWLILPFTSSAILMFWSPNLSVNARIIY CGITYVITGILYTGLNTPLTAILPLLTRDIDERVVLNSWRMTGSQTAVLFVNAFTLPLVA FFGHGNDKIGFRYLMIIFAITGCIMTIFSFYHLRERVEVKTEKIHFKDSIKALKGNWPWV IVFISNFFWWIANTERSTTLVYYFTYYIGDKLLVSVFNAVGIVQLLGMISVPFLSKKFTR QQIWIVSLLMAIIGQVIMWIGGKSIAILMIGWIIGNIGSGTALSLVFVAVGTAVEYGTWK TGITSAGLLTALGTSFCLKVGSGVAGFVPSTIMDKFGYVANHAQTANSLLGISLSFNLVT IIAFTLALIPILFYKKFESMEKMISQTINK >gi|269838498|gb|ACXB01000013.1| GENE 124 125658 - 127064 1434 468 aa, chain - ## HITS:1 COG:lin0237 KEGG:ns NR:ns ## COG: lin0237 COG1207 # Protein_GI_number: 16799314 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) # Organism: Listeria innocua # 3 452 4 453 457 528 58.0 1e-150 MVKSTIILAAGQGTRMKSKLYKVLHPVCGKAMVDHVLTQVEKTDMDHVVTVIGHGAEKVR ELLGDRTEYAVQKEQLGTGHAVLQAEDILGDKDGITMIVSGDTPLFTAKTFENLFEYHRQ KGAAATILTARTDNPFSYGRIVRNDLGVVDKIVEQKDATREEAEITEINTGVYCFDNQKL FKALHQVKNDNAQGEYYLPDVIGIMKAAGEIVAAYEMDDFSESMGVNDRVALSKATKVMQ QRINEVHMRNGVTIVDPENTYIDYGIEIGADTVIEPGVQLQGQTKIGSDCVIGAHSKIVD STIEDRVTVTSSQIEQAIMHHDSNIGPNSHLRPKAEIGEFVHVGNYCEVKNAKLGARTKM GHLSYVGDADVGTDINIGCGVVFVNYDGINKHHTTVGDYSFIGSNANIVAPVKLADHSYV AAGSTITGDVNQYEMGIARGRQVNKEGYFKKLPVYEAALEAEKENQRD >gi|269838498|gb|ACXB01000013.1| GENE 125 127073 - 127909 798 278 aa, chain - ## HITS:1 COG:lin0231 KEGG:ns NR:ns ## COG: lin0231 COG0503 # Protein_GI_number: 16799308 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Listeria innocua # 1 268 1 270 272 293 54.0 3e-79 MKLKRSERLIDMTNYLINHPRTLITSGFFVKRYSSAKSSISEDLSIMKSTLAKRQLGTIE ITNGAAGGIKYLPGIGKAEAQKVIQDLTEQLSDPDRKLPGGYLYMSDLLGHPDTLRAIGR MLASEYVFSDVDAVMTVETKGIPLAQAVANYLNVPFIIVRHESVITEGSTISVNYVSRSS ERIQKMELSKRSLQRGMKVLIVDDFMKGGGTVHAMVDLLKEFEAELIGISVLAEGTYKGQ RAIEDFTSLLNVDTSQAGQVQIKAGNYFERNFKEDTKE >gi|269838498|gb|ACXB01000013.1| GENE 126 128242 - 129030 890 262 aa, chain - ## HITS:1 COG:BH1395 KEGG:ns NR:ns ## COG: BH1395 COG1108 # Protein_GI_number: 15613958 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Mn2+/Zn2+ transport systems, permease components # Organism: Bacillus halodurans # 2 234 6 247 287 102 37.0 7e-22 MFSFEFMQNAYIAGTFIAIICGIMGVYVVGRNMSFLSHMLSEIGFSGAAFGIFMGWQALT GMLLFTIVSSILIGKMSVQASRRESAISAVSSLFLGLGILFLSISNKNVSYATNILFGSV IGIGRSEVRQVLLLTIVALAFILLMYRPLKFDSFDHVGASVKGIHTNFISIIFLVVLALS VSMAAQIVGSLLIFVLLTLPAAAAKIVAKTVSGMMLFAVGAALVGVWLGLYLGYVTSWPV SFFIALIECTVYFSAMLLGRKD >gi|269838498|gb|ACXB01000013.1| GENE 127 129023 - 129703 178 226 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 1 189 1 194 311 73 28 7e-12 MTETLVQVHDLTVEFPGQKLFNHLSFNIDRGEFLSVIGENGVGKTTLIRTLLHQVKPTHG EIKFRSAVNIGYVPQFRNIDRDYPLSIRDFVALNLQESRLPWLSKKERQQLDKILQETGL VEIQNTRMGRASGGQKQRAYLAQALVDQPDLLILDESTASLDSVRKYELFDLVQHFNRRH GLTVLSITHDFDLMKKYSDKYLLLKEDRYALGEVSDIHSEEDLPNV >gi|269838498|gb|ACXB01000013.1| GENE 128 129703 - 130596 719 297 aa, chain - ## HITS:1 COG:ML0337 KEGG:ns NR:ns ## COG: ML0337 COG0803 # Protein_GI_number: 15827093 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface adhesin # Organism: Mycobacterium leprae # 7 289 3 291 302 144 29.0 2e-34 MRGKRSWLAGLVLLLAGVFLLGGCTATKPKHSDKVQVVSSLNFYGDVAKKVGGKYVKVTN IIQNAATDPHDFEPTTKTAKLMVDADLVIENGMGTDAWMQRITPHKKGLQVINLGHLMNK KNGENPHLWYDLATMERLANQVAKQLSKKDPQHRVFYQRNAQKYVKSLQPIQKKIDEIKQ QSSGKKVAVTEPVYDYTLRELGYQISDRKFALAIENETDPSPKTVESLQQDLKQRRVEFI VNNQQTGNKVIDEVLKMAKKHHVPVINVTETMPDGKSYQEWMVSQLNQISKIIRGKD >gi|269838498|gb|ACXB01000013.1| GENE 129 130738 - 131325 643 195 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148988990|ref|ZP_01820390.1| hypothetical protein CGSSp6BS73_02415 [Streptococcus pneumoniae SP6-BS73] # 11 192 11 192 192 252 61 9e-66 MDYQMPFFKEIMQDPQNAIFTEKGWHPIYMLNPQARILIVGQAPGKRVQDTEIIWNDKSG DRLRDWMGISRETFYNSGKIAVLPMDFYYPGKGKSGDIPPRKAVAEKWHPQMVAAMPNIQ LTLLIGAYSQRYYLKTTPKTTTTELVKNYQSFLPKYFPLVHPSPRNNIWLARNPWFEEQV VPDLKRRVAAILQDS >gi|269838498|gb|ACXB01000013.1| GENE 130 131466 - 133007 1540 513 aa, chain - ## HITS:1 COG:SA1014 KEGG:ns NR:ns ## COG: SA1014 COG1288 # Protein_GI_number: 15926754 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 3 513 8 517 518 751 75.0 0 MLTKGKQRFKLKMPGAFVILFILTIVAVVATWVVPSGSYAKLAYNQANSSLQVKQPNGQV EKVPATQKELDKLGVKINIQKFTSGSINQEISIPNTYERLKQHPAGVDQITSSMVNGTIE AVDIMVFIFVLGGLIGVVRASGAFESGLLALTKKTKGHEFLLIFLVATLMVLGGTLCGIE EEAVAFYPILVPVFIAMGYDSIVCVGAIFLASSIGTAFSTINPFSVVIASNAAGISFTEG LPWRAFGCVVAALFVIGYLYWYSKKVKQNPAASYSYEDRNEFNQKWSVINNDEQQAAFTL RKKIVLALFVAGFPLMVWGVMTQGWWFPKMAASFLAFAILIMILTATGKNGIGEKGVVDA FVNGASSLVGVSLIIGLARGINLILNQGMISDTILDFSSSLVAHMSGPVFIIVMLFIYFV LGFIVPSSSGLAVLSMPILAPLADTVQIPRFVVVTAYQFGQYAMLFLAPTGLVMATLQML DMKYSHWFKFVWPVVVFLLVFGGGILVAQVLMY >gi|269838498|gb|ACXB01000013.1| GENE 131 133127 - 133837 700 236 aa, chain - ## HITS:1 COG:SPy1548 KEGG:ns NR:ns ## COG: SPy1548 COG0664 # Protein_GI_number: 15675445 # Func_class: T Signal transduction mechanisms # Function: cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases # Organism: Streptococcus pyogenes M1 GAS # 8 225 2 215 226 118 28.0 7e-27 MTNEQDSIRDNPKKYLKTKPEFSDFTDAELQQLINQMHVKQFPKGQVLFDQSDDRENLYF VIKGLVRAERTDANDKFTFYTYVKADLAFPYRGMFTECYYPYTAQAMTDIEIVYFPMSVF ESLLRQNNAALVKVVKEMSSIISESEDQIQQLVTPSARQRIVQALKTFEADLGQLQPDGS SKIPYPLRIKELAVMSGTSRETAGQIVKYLVEQNLIDYEHKRFVFKPEFFQDEDDD >gi|269838498|gb|ACXB01000013.1| GENE 132 133906 - 135333 1432 475 aa, chain - ## HITS:1 COG:L94890 KEGG:ns NR:ns ## COG: L94890 COG0531 # Protein_GI_number: 15674017 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Lactococcus lactis # 8 465 7 476 490 374 44.0 1e-103 MSEKKPPKKIGLLPLCALVISSSIGGGVFGLPSDLARAAAPGPVIIAWLIVGFGILMLAL SLNNLLLKEPKLEGMFSYAQKGFGPFAGFISGWGYWLSAWLGNVAFATMMMSALGYFFPV FKSGQNLPSILLASVLLWCLTYFVSQGIEGAAIINMVVTIGKLVPLFVFIVTAIILFDGH LFTQAFWDNVGSHFVVSDVMQQIKNCTMVMMWVFVGIEGASTLSARAQKKSTAGKATMFG LISLLAIYMLISILPYGYLTRTQLADLHQPALLYVFAQMVGPWGGYLIGIGLIVSILGAW LSWTMLPAETILLMAKQKLLPKYFGKVNRHNAPTFALVMTAFLVQGFLFTLLFTSRAYNF AYSLCTASIIVCYILVAAYQIKYSYQHLNVKGNRAQLMIGVFALVFEVVGIWMAGIEYLL LCLIAYLPGIYFYGKARQENGCAVRLSHKEKLVTGLLTAGALLSVGLMFTGGISL >gi|269838498|gb|ACXB01000013.1| GENE 133 136197 - 136973 258 258 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 3 253 2 238 242 103 30 4e-21 MNKSKVAMVTGAAQGIGKAIALRLAQDGFAVGVADLKAAAAQQVADEINDRGQTAIAVEV DVANRDDVFKAVSQVSDQLGGFDVLVNNAGLGPTTPIETITPEQFDKVYHVNVAGPLWGI QAAVAQFEKLSHGGKIINATSQAGVVGNPNLALYSGTKFAIRGITQVAARDLADKGITVN AYAPGIVKTPMMMDIAHQVGQNAGKDDEWGMQQFAKDITLKRLSEPEDVAAAVAFLAGPD SNYVTGQTIIVDGGMQFQ >gi|269838498|gb|ACXB01000013.1| GENE 134 137007 - 138350 1347 447 aa, chain - ## HITS:1 COG:SPy1150 KEGG:ns NR:ns ## COG: SPy1150 COG0446 # Protein_GI_number: 15675127 # Func_class: R General function prediction only # Function: Uncharacterized NAD(FAD)-dependent dehydrogenases # Organism: Streptococcus pyogenes M1 GAS # 2 439 3 454 456 312 37.0 7e-85 MKIAIVGCTHAGTFAAQQILTEHPDYDVTVYERNDNLSFLSCGIALWVGNHVSDPKKMFY SSPEALTELGATMKMKHDVLDIDPDTKTLKVKNLATNEEFTDTYDKLVMTTGSSPVIPPI DGIDNERIKLCKNWNDAAELKRIDDNVKSVVVIGAGYIGAELAEQYAITGREVTLIDGLP NVLAKNFDLEISDRVAKDYTDHGVKLAMNEMVQGFSGTDQITVKTDKGSYTADYAILCVG FRPHTSLLKNKVDMLKNGAIITDEYMQTSNPDIFAAGDASVVHYNPTGKDDYIPLATNAV RQGILIGHNIEKPTVKYLGTQASSAVALFGKTLASTGLTEGGAQARGVEVDSVTLEQDYR PEFMLTTTPILMRLVWDPKTRVVLGGAFYSDYDCAQSANTISLAIQNKMTIDDLSMVDMF FQPNYDQPLNYINALAMAAVAKADSKK >gi|269838498|gb|ACXB01000013.1| GENE 135 138594 - 139355 767 253 aa, chain - ## HITS:1 COG:BH0181 KEGG:ns NR:ns ## COG: BH0181 COG1737 # Protein_GI_number: 15612744 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus halodurans # 1 241 1 239 241 160 36.0 3e-39 MFSYERIQTLNQLEMFVYKYVAGHLEECKTMTIRDLSAKSHVSSTTVLRFLKKMGYEGFS DFKYALRHHDKPDRFGQVEQEWGPIAQFLTQANLPKYRQKISAVAQLFLKAHTRLFLGMG SSSSLAQYGARVLSNYGLFSLAIMDPYQPQPIEGRDYTKTLIMFLSVSGESDAILRQANY YRQNGATTVAVTANHLSTLARVCDHCLAYDIPEKKVGTLDFTSQVPVVYVLEQIGQRCGE LMKNNKVTTKVKK >gi|269838498|gb|ACXB01000013.1| GENE 136 139416 - 140870 1217 484 aa, chain - ## HITS:1 COG:SP0303 KEGG:ns NR:ns ## COG: SP0303 COG2723 # Protein_GI_number: 15900236 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Streptococcus pneumoniae TIGR4 # 11 481 7 477 478 656 66.0 0 MTEKNYRMPAGFLWGGAVAAHQFEGGWQADGKGVSIADVMTAGNKDTPRKVTDGVVDGEI YPNHWGIDFYHHYREDIALFAEMGFKCFRTSIAWTRIFPNGDETEPNEAGLKFYDDVFDE LLKHDIQPIITLSHFEMPYHLVKEYGGWTNRKLIDFFVRFAKTVMERYRGKVKYWMTFNE INNQADYDDPHPLLQNSGLLVTKTTPDKEALMYQAAHNEMVASAKVVKLAHEIDPDYQVG AMIAMCPIYPLTAKPADIMKAERAMQTRYYYGDVQANGEYPAWLLKYWQRRNISVDISDE DRKILAQGTVDYIGFSYYMSFTTKANDDDSDYAYRESTDLVDNPYVAKSDWGWQIDPIGL RYSMNWMQDRWHKPQFIVENGFGAYDQKTADGQVHDDYRIKYFHDHILEMEKAVVLDGVD LIGYTPWGCIDLISASTGEMAKRYGFIYVDQDDAGHGSLARSKKDSFAWYQKVIASNGAN LTTN >gi|269838498|gb|ACXB01000013.1| GENE 137 140883 - 141206 469 107 aa, chain - ## HITS:1 COG:lin1830 KEGG:ns NR:ns ## COG: lin1830 COG1447 # Protein_GI_number: 16800897 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIA # Organism: Listeria innocua # 9 102 5 98 100 97 60.0 6e-21 MAEQEQDMQAIMGLIINGGNAKSSAFEAINAAKEGDFKRADEKLKESDGFLTEAHNAQTG MLTEEANGNHAKVTLLTVHSQDHIMNAITFRDLAGEIVDLYKKLAEK >gi|269838498|gb|ACXB01000013.1| GENE 138 141280 - 141591 418 103 aa, chain - ## HITS:1 COG:lin2831 KEGG:ns NR:ns ## COG: lin2831 COG1440 # Protein_GI_number: 16801891 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIB # Organism: Listeria innocua # 4 101 2 100 101 97 61.0 4e-21 MAEKTIMLVCAAGMSTSLLVSKMQKAAEAEGVDAEIFATAASDADNKLSEKSPDILMLGP QVRYLEDNFKKKLDIPVEVIDMQDYGMMNGEKVLKEALSAMGN >gi|269838498|gb|ACXB01000013.1| GENE 139 141747 - 142442 439 231 aa, chain + ## HITS:1 COG:SA0254 KEGG:ns NR:ns ## COG: SA0254 COG2188 # Protein_GI_number: 15925967 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Staphylococcus aureus N315 # 2 224 4 229 234 97 29.0 2e-20 MYTFIANDLIYKINHHQFKVKLPTEYELMQKYSVSRNTIRKAIDIISQKGLVRRVQGSGY YINNIGADTDRIVNLTMGVSEGFNHQKLTSRVVTFDRMIADRAMANEFGCEDGDELYRII RYRYRKNQPYILEYAYYERNEVPFLPVDVLHESILEFIKAEYDVTVDSSDQYVGIEPLSP EAASITGFPQGDRYITLYQSHYRKNNVLFNFSKTYYLDCRTRFYFHAINQS >gi|269838498|gb|ACXB01000013.1| GENE 140 142760 - 143755 907 331 aa, chain + ## HITS:1 COG:SP1069 KEGG:ns NR:ns ## COG: SP1069 COG2984 # Protein_GI_number: 15900938 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, periplasmic component # Organism: Streptococcus pneumoniae TIGR4 # 21 323 38 339 344 232 40.0 6e-61 MKRMLSFIVIIFAFLGFAFFKEGNSTNQASQTTKKIGILQLMDQPALKQIQRGVYAGLKQ TGFTEGKNLKVDYQNAQGNQSNLKTMSEKFENEGVDLSIGITTPAALALANTTSTTPVIM SGITDPKGARLMTNLKHPTTNVTGVSDQAPLAQQLQLIQQLMPHLHTLGIIYTSSDNSAV TQYHQFKKLAQKAGINLKAYSIANSNDLNQVSQSMVQAVDAVYVPTDNTIAGAMSTLVKN TNAANVPVFPAVDSMVKNGGIATYSVNQYKLGVLTGKMAGRILKGEKVRENPVEYLKRGD LTINLKQAQQMGIKIPNNLLQKAQKEGVIYK >gi|269838498|gb|ACXB01000013.1| GENE 141 143752 - 144672 959 306 aa, chain + ## HITS:1 COG:SP1070 KEGG:ns NR:ns ## COG: SP1070 COG4120 # Protein_GI_number: 15900939 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 3 285 1 280 288 272 56.0 6e-73 MNLITSAIGQGLLWGLLGVGLFLTFRILDFPDMTVEGTFPLGAAVSVTAITHGVDPLLAT VLAFGVGMLAGLTTGLLYTKGKIPILLAGILVMTACYSINLRIMGTSNVSLLGHHTLFSG AFLTALPPFFDSVLLGLLIITVVVALLALFLQTELGQAFIATGDNEKMAKSLGIHTDQMK NLGLMVSNGLIAVSGALIAQSDGYSDVNMGIGIIVIGLASIIIGEVVFGELTMNQRLVAV VCGSIIYRFVLLLVLKAGFNTNDLNLISSLVLALCLMLPTLRQKLRLSNIVRRGLSPISQ ERDSNE >gi|269838498|gb|ACXB01000013.1| GENE 142 144665 - 145423 193 252 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 25 234 15 219 245 79 28 1e-13 MNNQVILELKNVSVYANRHTSEEIQILKNINLKVYQNDFITLLGSNGAGKSTLFNVIAGN LAVDEGQILLAGKDITHLSEEKRTRYISRVFQDPKLGTAPRMTVAENLLLATKRGQRRGL RPRRLNQHTAEFKQITASMPNQLSNRLKTPTGSLSGGQRQALSFLMATIKRPEILLLDEH TAALDPKTSTELMVATQERITADHLTALMITHQLSDAVKYGNRLLVLRNGQITQDLNAEE KAQADLRELSIY >gi|269838498|gb|ACXB01000013.1| GENE 143 145557 - 146432 608 291 aa, chain + ## HITS:1 COG:SA1990 KEGG:ns NR:ns ## COG: SA1990 COG4814 # Protein_GI_number: 15927768 # Func_class: R General function prediction only # Function: Uncharacterized protein with an alpha/beta hydrolase fold # Organism: Staphylococcus aureus N315 # 1 290 1 289 289 186 38.0 4e-47 MKKILLVLLGLLIIATGIVYLTGPHRSSTTAKYVQSTTPTLFVHGWGSSFHAEEKMVDAA RQAGVTNTVVRADVAKNGQVTFNHSIPADAINPIVEVNLADNKLTANNDHEDYVSGYHRG GEYIKQVVVALEKQHHYHSINLVGHSMGNLEIINYLNDNLHNAKLPQVAHLVAIAGHYNG LMGEKKSEQANVNQATGKPSWMAPAYRELLNLRKNFPTSTAVLNIYGDLDDGSHSDEAVP VNSAKSLKYLVSPRAKSYTELEIHGKNAQHSKLHNNARVNRALIKFLWQKK >gi|269838498|gb|ACXB01000013.1| GENE 144 146732 - 148168 1388 478 aa, chain - ## HITS:1 COG:BS_lmrB KEGG:ns NR:ns ## COG: BS_lmrB COG0477 # Protein_GI_number: 16077336 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus subtilis # 20 474 16 476 479 350 46.0 4e-96 MKQNENNGMMQARVPVAHPMIVMASMMIGAFVGMFSETSLNIALPQLMSHLNVAAGTIQW LVTGYMLVIGIVLPFSSLISKWFTTRQIIIFGLLAFIVGAVVSALSTAFPMLLAGRMIQG IATGLILPMMFTVAMQVFPPYKLGAAMGMCALVIMFAPAIGPTLTGLILAKLSWNWIFWA FVPFLVIALLFAIFGLKNVGELTKPKVDVLSLLESIIGFSGIVMGVSFASEQGWASPLVL GSLIVGIIVLALYVKRQLALAEPVLNLKIFAIPAFRTGAVLVMLDFGIILSAMYLLPMYI QRGLLLPVALTGIIMLPGGIINALVSAVAGRLYDKVGAKTPVRLGLIIALVGAVMLIFTT THTSIAYLIAAHVILMVGAPLAMSPAQTYALNSLQGAQSGDGSTIMNTMQQIVGAIATAL ATSLLGIGQAAYQNHHGSGHLSAAFTNGTHYGFYFTIALIVVGLLASLRITTAKDVEK >gi|269838498|gb|ACXB01000013.1| GENE 145 148423 - 148875 546 150 aa, chain - ## HITS:1 COG:SA1532 KEGG:ns NR:ns ## COG: SA1532 COG0589 # Protein_GI_number: 15927287 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Staphylococcus aureus N315 # 12 150 4 143 166 77 32.0 8e-15 MSSTRELNPRRFSQILVGVDDSPDAQLAFRFAMNRAKQDDAELDLVTVIEENDINIYQAL DKNFITQKRAELEKHLQDYRKIALEFGIKKVQTYIAEGEAGETIVKNVIPRVNPDLLVIG SSSKTGMAKYFGSQASYMAKYAPISVLVVR >gi|269838498|gb|ACXB01000013.1| GENE 146 148890 - 149369 513 159 aa, chain - ## HITS:1 COG:SA1532 KEGG:ns NR:ns ## COG: SA1532 COG0589 # Protein_GI_number: 15927287 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Staphylococcus aureus N315 # 1 149 1 145 166 101 37.0 6e-22 MLEYKKILVPIDGSANSEWALKKAISVAQRNHGHLDVVTVIQSSRFMDIYGHMGTNMNYV EVSLLRAKEYVDNIKEQIQQKYHFTDIDVYVEAGDPKTVVATDLPEKLGTDLIMIGSTGL NALQRTLLGSVADYVVRIAPVDVLLVCTKMDNFTIAKEV >gi|269838498|gb|ACXB01000013.1| GENE 147 149508 - 150020 361 170 aa, chain - ## HITS:1 COG:CAC0723 KEGG:ns NR:ns ## COG: CAC0723 COG1309 # Protein_GI_number: 15894010 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Clostridium acetobutylicum # 7 169 14 179 185 60 25.0 2e-09 MANHEATKKKIVDGLFELLKDNELASISVSNICQTASVSRMSYYRSFKSKDQIIDYKIDQ IFTEFFNYLMTRPNHDISAFLEAYFAVCRKNAYYIGILIDADLNDRLYNKLHFYLTDLIE KGIFKLRTDIPVMWVNFAAGGLSQMVVQWVKDGLVQTNQEMVMVAHRFLR >gi|269838498|gb|ACXB01000013.1| GENE 148 150030 - 150881 717 283 aa, chain - ## HITS:1 COG:BH0061 KEGG:ns NR:ns ## COG: BH0061 COG1947 # Protein_GI_number: 15612624 # Func_class: I Lipid transport and metabolism # Function: 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase # Organism: Bacillus halodurans # 1 283 1 282 287 287 50.0 1e-77 MEITEKAPAKLNLFLDTPFNHPDGLPEWNMIMTSVDLADYVKIESIPGRTGIKVRTNTGF LPNDSRNLAYQAARVLQEKYQIRARVNIEIRKHIPVAAGLGGGSSDAAAVLRGLNQLWDL KLNNEELAKIGLTIDSDVPFCVYGHTAHVLGKGEKVIPLKKLPPMWVVIAKPKLSVSTPH IISKIEHQTLQHSNIKLMLDAIEHEDYDSICRYMGNVLEQVTGKEHPEVLKIKDKIKQFG ADAAQMSGTGPTVFGICSKSTRAKHIVNSLKGFCHEVYLVRIL >gi|269838498|gb|ACXB01000013.1| GENE 149 151229 - 151534 283 101 aa, chain - ## HITS:1 COG:lin0228 KEGG:ns NR:ns ## COG: lin0228 COG4466 # Protein_GI_number: 16799305 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 79 1 79 85 87 59.0 6e-18 MPITLATIKDKLDNRIGEELLVVAQAGRKKVTKRRGRLHMTYPAVFVVDLDQDENSFERV SYSYTDILTRNIKLNFDDETDGEEAAEDIEDEEDEAEFDAE >gi|269838498|gb|ACXB01000013.1| GENE 150 151661 - 152554 899 297 aa, chain - ## HITS:1 COG:SP1985 KEGG:ns NR:ns ## COG: SP1985 COG0030 # Protein_GI_number: 15901808 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Dimethyladenosine transferase (rRNA methylation) # Organism: Streptococcus pneumoniae TIGR4 # 16 294 1 279 279 291 51.0 9e-79 MKNQIEIGNPTRTRAILEKYGLSAKKSLGQNFLTDPNVLVNIVDAAEINDGDDVIEVGPG IGSLTEQIAKRAHQVLAFEIDQNLIPVLDETLAPYDNITIINEDVLKVNVNEVVAEHFDG QHPIKLVANLPYYITTPILKSFMASSLPIAKMVVMMQKEVADRLTAQPGDKEYGSLSVVV QYRMQTQVEFTVPARVFVPQPKVDSAIVSLTPRKDWPVYPADDRDFFKTVHGCFMHRRKN LWNNMQGLYGKAPETKEKIQSVLDELEIDPHIRPERLTVVDFINLHNQIQTVGLKRK >gi|269838498|gb|ACXB01000013.1| GENE 151 152551 - 153120 521 189 aa, chain - ## HITS:1 COG:BS_yabF KEGG:ns NR:ns ## COG: BS_yabF COG1658 # Protein_GI_number: 16077109 # Func_class: L Replication, recombination and repair # Function: Small primase-like proteins (Toprim domain) # Organism: Bacillus subtilis # 7 184 2 179 186 185 57.0 5e-47 MGLKMKKIKEVIVVEGKDDTKRISLAVNADTLETRGSALSEETIEQIQQLQETRGVIVFT DPDFSGEKIRKTIAAEVPNVKHAFLKRSDAVPDHKGSLGVEHASPEAIRHALEHLYTEDD EALPQISQDDLMEAGLIVGKEAKKRRIKLGEILGIGYVNAKQLPKRLQLFQVAKSDFEQA VQQIDGGKV >gi|269838498|gb|ACXB01000013.1| GENE 152 153095 - 153877 781 260 aa, chain - ## HITS:1 COG:L87336 KEGG:ns NR:ns ## COG: L87336 COG0084 # Protein_GI_number: 15672669 # Func_class: L Replication, recombination and repair # Function: Mg-dependent DNase # Organism: Lactococcus lactis # 1 256 1 256 257 263 50.0 2e-70 MKIFDSHTHLNDEAFWGNEQTYLDHARKLGVKATAQVGSNTVLNQRALELAEKYPHTYAI VGWHPEDAKDFHESERATLLEQLKNPKVVALGEIGLDYHWDTSPQKTQRRVFTEQIQIAQ ERNLPIAIHNRDAMEDTYEILKNASTHPIKGVMHSFNGNVAWMEKFLELGLNISFSGVAS FKKTKEVHEAVRQVPLERIMVETDAPYLAPEPLRGKQNEPAYALYVLEALARHRDMDPDE LAKATFENTCKLYGIENEEN >gi|269838498|gb|ACXB01000013.1| GENE 153 154158 - 156182 1858 674 aa, chain - ## HITS:1 COG:lin0216_1 KEGG:ns NR:ns ## COG: lin0216_1 COG0143 # Protein_GI_number: 16799293 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA synthetase # Organism: Listeria innocua # 3 539 4 540 549 733 65.0 0 MAENNTYYITTPIYYPSGKLHIGNSYTTIACDAEARFQRLQGKDVFFLTGTDEHGLKIEQ KAEALHTTPQAYVDDMAKGIKELWKLLEISNDKFIRTTDEAHEKSVQYIFQKLLDQGDIY LGEYEGWYSVSDEEYFTESQLAEVYRDENGKVIGGKAPSGNEVELVKEESYFFKMSKYAD WLLDYYEKHPDFIQPASRMHEMINNFIKPGLEDLAVTRTSFKWGVPVKNDPKHVIYVWID ALSNYITALGYGSDDDSLFKRYWPANVHMVGKEIVRFHTIYWPIMLHALGLEMPKQIYGH GWLLMKDDKMSKSKGNVIYPETIVEKYGLDALRYYLLKAMPYSNDGNFTPEDFVSKINFD LANDLGNLLNRTVAMINKYEGGVIPTFQSGVNEVDADLEKVAAETIKNYQELMESMHFSD ALAEVWKLVSRSNKYIDETTPWILARNDDEESKQKLASVMNHLAESLRIIAILIQPVMTQ SPAKIFGQLGLDPATMELQGLHFGEIPAGTKVVEKGTPIFPRLDIEKEAAFLKGQMTQSD KKKGRAAMAEANQAKATEENVNEAKKEIRIEAFDKVELRVAEILEAGHVEGADRLLKFKL DAGDEEPRQILSGIAQWYPNPEELVGKKVVIVANLKPRKMRGEISQGMILSTERDGQVNV VMVDEKHENGDVLG >gi|269838498|gb|ACXB01000013.1| GENE 154 156472 - 157110 327 212 aa, chain - ## HITS:1 COG:lin2505 KEGG:ns NR:ns ## COG: lin2505 COG1801 # Protein_GI_number: 16801567 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 209 2 205 281 182 44.0 5e-46 MIEIGLSTWTDHPALSTEGKDKATLTEYAGHFPLVEVDSSFYATPSLSNVVNWQHQVPEQ FRFIFKANQAMTLHDGVVDEDYLTTERRMVFTDFYKVMQPLVKANQLAAVLFQFPPSFRC ELKNIRYLFEVRQMMGQLPIAVEFRNASWFTDAVTEDTLSYLQRLKMINVTVDEPFDGNQ GMPFVLQVTSAKQAFFRLHGRNASGWFSSGKN >gi|269838498|gb|ACXB01000013.1| GENE 155 157189 - 157854 581 221 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0264 NR:ns ## KEGG: PEPE_0264 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 221 1 221 221 214 55.0 3e-54 MSEKGWRITANIAGILSLLAVFLFMFRMLVGKIDFWTILFFSLIVVGAVAYALIHMILKI RWLTPSKESVTEQVSETREFVGLFMSILVVFACAIGFSFFSKTAAGEAAGTILFGATLIT IVAKIYDIWRLTNAKTQGRQMVGHDPIWPLSQAEKIGCGLFLIGILGMWLWAPLLAVSYA GLLIFLIKPIRHRVEGRWLDVLLMTINLVMVLLSTLLVVFK >gi|269838498|gb|ACXB01000013.1| GENE 156 157742 - 157975 146 77 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MVQKSILPTNMRNMNKNTANNESIPAMFAVILQPFSLIFKCLQFYTWNQYLIILPFNFLP SYRDSSFAFFLPKCYIM >gi|269838498|gb|ACXB01000013.1| GENE 157 157997 - 158188 221 63 aa, chain + ## HITS:1 COG:no KEGG:PEPE_0262 NR:ns ## KEGG: PEPE_0262 # Name: not_defined # Def: putative stress-responsive transcriptional regulator # Organism: P.pentosaceus # Pathway: not_defined # 1 62 1 62 62 85 67.0 4e-16 MNKRLYKSSTDRVISGVIGGFAETYNVDANLLRIIYTAITVFSGFFPGLIIYLVAMVVVP EKS >gi|269838498|gb|ACXB01000013.1| GENE 158 158352 - 159308 902 318 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0259 NR:ns ## KEGG: PEPE_0259 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 318 1 318 318 489 77.0 1e-137 MSNVEVNDQVKSLLEAVNATFPGEVRLSFGDQQAGFVRHDQAQQFHEPGKMLIKVDDITA PNYTASHELIHLLMVLKGFPQLYFGLTTGEKETDQQLMFLITELYDVIAHEVVVDEQRRH DLIDEQVEAEFLKGIQDAVEPETDGKVDGFSAIRLIMMMDAINFYGDHLSDYEAQLTADY PTTFATAQKMMAELNQRSITSPFDLHRKVVKAFTMVDQQLQDWGLPELHALEFATLGSVF SERQLRLSVKQLFQIYHSELHEKAQDTRAFVGLGIGDQQNAFVVPTPKDKPSDEYFRELY AKNVKDFFDEIKMPYTTR >gi|269838498|gb|ACXB01000013.1| GENE 159 159301 - 160527 1245 408 aa, chain - ## HITS:1 COG:SP1726 KEGG:ns NR:ns ## COG: SP1726 COG1257 # Protein_GI_number: 15901559 # Func_class: I Lipid transport and metabolism # Function: Hydroxymethylglutaryl-CoA reductase # Organism: Streptococcus pneumoniae TIGR4 # 4 402 7 423 424 303 46.0 5e-82 MIEGYHRLSRQAQLELLSEVTGVGVATLAKLPIDAVRQQQIENYLTDFRVPEGIAVNFKV NGREHVVPMVTEEPSVIAAASNGAKLVCQAGGFQAHSKRLMRGQLLMNTKTSIEVSQWVV DHQKHLLEVANAAHPSMQKRGGGALKIMPRPLSATQLSVDLLVDTKEAMGANTINTMLEA LKTEFEMEGIAVEMAILSNLADQALTTVTCTIPETVIDSAVAQKIADASEFAQIDPYRAA THNKGIMNGIDAVVMATGNDWRAIESGAHAFAARDGQYRGLSTWQIVDQQLQGQLVVPLP VATVGGSIGINEQAQLNLELLQIDSANQLAEVIGAVGLAQNLAALKAIVTEGIQHGHMRL QAKSLLLEHGLPATKLNEAVPRLLKEPRIDSAHAQKIIEQMRKKDLDE >gi|269838498|gb|ACXB01000013.1| GENE 160 160524 - 161462 885 312 aa, chain - ## HITS:1 COG:CAC0621 KEGG:ns NR:ns ## COG: CAC0621 COG0248 # Protein_GI_number: 15893909 # Func_class: F Nucleotide transport and metabolism; P Inorganic ion transport and metabolism # Function: Exopolyphosphatase # Organism: Clostridium acetobutylicum # 1 299 1 298 499 171 31.0 2e-42 MKNLVIVDLGSNSVRMAINSITDEGTFREIRRVKEDSRISEGMGRERLLRPQAINRTIEA LHRFKAIYEEYPRIEVRGITTAAVRMARNQKDFLKRVQRETGIKLEVLSGDDEAYYDYLG VINSLEVKDCLVLDTGGASCELIDVHNGKARNMISIPIGAVSLSERFHLSNVIRGDNLFS AEMFVNKQLRDVWWIMDAFNKPVVLLGGANRTLARINRCRQKIARVNNIHGYRLKTEAIN RTFRSLITRNLENRKKIAGLETARADIIVGGVLPLVMLLQMIDSDRVIFSESGVREGIIS EYINQHVKGVNL >gi|269838498|gb|ACXB01000013.1| GENE 161 162010 - 163032 1088 340 aa, chain - ## HITS:1 COG:SP2229 KEGG:ns NR:ns ## COG: SP2229 COG0180 # Protein_GI_number: 15902033 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Tryptophanyl-tRNA synthetase # Organism: Streptococcus pneumoniae TIGR4 # 4 338 3 340 341 469 69.0 1e-132 MTAKKVILTGDRPTGKLHIGHYVGSLKNRVQLQNTGNYDTFIMIADMQALTDNARDPEKI RNSLIQVALDYLAVGIDPAKSTIFVQSQIPALSELTQHYMNLVSVSRLERNPTVKTEIKQ KAFGQSIPAGFLTYPVSQAADITAFKADTVPVGDDQEPMLEQTREIVRSFNNIYGKDVLV EPEGYFPPKGMGRIPGLDGNAKMSKSLNNAIYLADDADTIQKKVMSMYTDPQHIRVEDPG HIEGNTVFTYLDIFDPDKEKVQELKDHYQAGGLGDVKIKRYLNEVLQAELKPIRERRESY AADLAGVYQILEEGSQKANAIANQTLSEVREAIGLNYFKK >gi|269838498|gb|ACXB01000013.1| GENE 162 163380 - 165665 1894 761 aa, chain + ## HITS:1 COG:BS_yvgS KEGG:ns NR:ns ## COG: BS_yvgS COG3973 # Protein_GI_number: 16080398 # Func_class: R General function prediction only # Function: Superfamily I DNA and RNA helicases # Organism: Bacillus subtilis # 3 751 7 772 774 446 35.0 1e-125 MDEQQQEQQRVDFVVDQIGAQKKRTEDLYEKAHHETSKVEKNYSQNAKVNLIEADDRIET EAEIQQQKGLVARAVENEAILKRQINSLTELQDSPYFGRIDIQDPDETTPESLYIGVASF ADQDGDFLIYDWRAPISSIYYNGTLGKVKYETPAGPMETELTKKRQFTISHGEITHMFDT NETVGDELLQQALGEQNDEYMRNIVATIQKEQNDIIRDVQSDLLVVQGVAGSGKTSAILQ RIAFLLYHSRASLDADEIVLFSPNKLYSRYISDVLPSLGERNMRQLTLAEFLNRRLEGLN VQSLFDRFENQVSQTAEEQRIISFKESQRYIELIQQYEDQLTPENIKFTDINYQGAPFFK KEQIREIFASFPASMSNRERILRTKNQLVKLLKARIDQEVSADWVQTQLDQISDEKYHEI VGRRHFNSFDEENYFIGRHLVTKAFEIIDDAIFNNYFIDVYAQYADFLRQLPSSEIDGAA AATTFNNDIELHHVRLEDAAPLMMLRDLITGSGTNRKFQYVFIDEMQDYSVAQLMYLKHA FPKAKFTLLGDSEQALFKDVTKPAALLEKLKDAFAVHRANLITLNRSYRSTAEITKFAAA LLPDGDKIQPFSRHGKLPEITVTDTLSEAITAVKQICQAELQDYGTVAILTKNMQESTQV AEWLHDLKPSLLTDGDRSLPKGIVVLPIYLAKGLEFDSVIAYNVSEQNYPEKLWRGTLYT IASRAMHHLNLVSIGKVSEIITQMKEEGFSIKRVWNSSGKL >gi|269838498|gb|ACXB01000013.1| GENE 163 166037 - 167197 286 386 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229845962|ref|ZP_04466074.1| 30S ribosomal protein S2 [Haemophilus influenzae 7P49H1] # 2 382 8 388 618 114 25 2e-24 MEFVGVLVLILGLTLLAGHFAQRIGIPAVVGQLLVGIVLGPGVLGVIHSNEITAVFSEIG VIILMFLAGLESDLKMLKRYIKPALVVAVMGVILPIALVGGASLIFGVSPMEALFIGVIF SATSVSISVEVLKEYQTLNTKEGATILGAAVADDILGVLLLGVMIALTSSSGGSKTSLGG ALFYQVLFFIAVYVIGKWLVPMLMRAADRLYITAARPVMSIIICLGLAWLADVAGLSGAI GAFFAGVAVSLTDENDELNESIEPIGYAVFIPVFFVSVGLSMSFAGLQSVIGLIITLTVL ATLTKLLGCGAGAYLSGFDVTSSGVIGAGMISRGEMALITLQIGYGEHLMSETYYSAIVL VIVLVTLIAPFILKDAIKYNKRAMAR >gi|269838498|gb|ACXB01000013.1| GENE 164 167227 - 168564 1276 445 aa, chain - ## HITS:1 COG:lin1472 KEGG:ns NR:ns ## COG: lin1472 COG1249 # Protein_GI_number: 16800540 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes # Organism: Listeria innocua # 4 444 6 445 446 360 42.0 4e-99 MEKFDVVIIGAGPAGLGLAYDLKQAGQAVAVVEENRWGGTCPNRGCDPKKVLMAAVEAKL RSHHLVGKGLENEPEIDWPSLMRFKETFTEPVSSSSRQGLVDAGITVLDGHAEFVDQHTL KVGEQRVESSQFVIATGQRPGRLSKIENEALMQTSTDFLAMPELPKRIALVGGGYIAFEL AAIANAAGAEVHVIHHNDRPLKQFPAKSVKQFMEQLTKQGVQFHLNIDVTAIEKSAEGMT LRDDHQFSLPVDQVFVTAGRVPNMDTLNLEQAGVETAKNGIMVDDHLKTTASNIYAMGDV VAKAQPKLTPVAGFEAQYLAQLLTRQSSAAIAYPVIPTVVYGVPQLAKAGVEVATAQKDS QRYEVKDLDLTNWFTYRRIQDPDARATVVVDRQSQQVVGVVTMSSEAEHVINDLTWLINH GGSLSELQRQIFAYPTEASDLEYLR >gi|269838498|gb|ACXB01000013.1| GENE 165 168588 - 169553 790 321 aa, chain - ## HITS:1 COG:lin1460 KEGG:ns NR:ns ## COG: lin1460 COG1125 # Protein_GI_number: 16800528 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, ATPase components # Organism: Listeria innocua # 5 317 1 317 327 284 46.0 2e-76 MSKTMIEFRHVKKIFGGRTVIDDLSFTVKEGEIFVLVGTSGSGKTTTLKMINQLFVQTAG DILFNGQRIKDYDLRNLRLEIGYVLQQIALFPTMTVEQNISLIPEMKRVDKEEVKRRVTQ LLEDVDLDPERYRKRYPRELSGGEQQRIGILRALAAQPPVVLFDEPFSALDPLVRAQLQD LVLKLHQKFKNTIVFVTHDMDEALKLGDRIGVMKDGKLLQVATPKEIAQNPANEFVENFF SATVGKNLYQTEVEKVVRTGFGVSAPSTTEKLPVIPRTASLDEVFQQLAEHPILQVVDEH GQTTGWVDRPSLFKYLSETVH >gi|269838498|gb|ACXB01000013.1| GENE 166 169550 - 171082 1272 510 aa, chain - ## HITS:1 COG:lin1461_2 KEGG:ns NR:ns ## COG: lin1461_2 COG1732 # Protein_GI_number: 16800529 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) # Organism: Listeria innocua # 209 505 6 299 299 302 53.0 1e-81 MKDLVQTFAEQKSDLWQALLQHLGISLVALVLAIVIAMPLAIWATRHRKIAEILLQITGV LQTIPSLALLGLLIPLVGIGSVPAIIALVVYALLPIFQNTYVGITEIDPSLEEAADAFGM QPLQKLFRVELPTAMPVIISGIRTGLVLIIGTATLAALIGAGGLGNFILLGINRNDPALI LVGAISSALLAIGLSALLNVLQRWSVKKITISLAILVVAVSGATVAKILTPPTETITIAG KLGSEPDILINMYKDLIEEEAPHTKVTLKQNFGETSFLFNALKADKIDIYPEFSGTVLET LVKDAPSQRLSAAQTYATGRKLLAQQYQMDYLKPMRYQNTYALVVKKDFAKQHHLENISD LSRIENQLHGGMTLEFINRKDGWKGIQKAYGLEFPVKSMQASLRYSAIKNGQINVADAYS TDSQIRQLGLQVLKDDQHVFPPYQGAPLMKKSFAKKHPQVVRALNRLAGKITEAEMQEMN YQVNVQKRSAQQVAHDYLVNKGLLKGAERK >gi|269838498|gb|ACXB01000013.1| GENE 167 171174 - 172409 1190 411 aa, chain - ## HITS:1 COG:STM3334 KEGG:ns NR:ns ## COG: STM3334 COG0402 # Protein_GI_number: 16766629 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Salmonella typhimurium LT2 # 17 406 22 411 426 483 58.0 1e-136 MLIKGVYIENAKEPKDVRVEGGVFQEIAPNLTPHESEEVIEAQGKLLLPPFVDSHVHLDA TLTAGDPEWNESGTLFDGIRIWAERKKSLTKKDVKTRALQTLKRQAQHGIQYVRSHVDTT DPNFTALEALLEVKDEVKDFMELQLVAFPQEGIWSFPNGKQLLKQAVAMGVDVIGGIPHF EFNRDYGVASLKYIVELAEKYDKLVDVHCDEIDDPNSRHLEVLATLAYESGLKKRVTASH TTAMGSYNDAYVYKLMRLLEMSEINMVSNPLINIHLGGRFDTYPKRRGLTRVKELLEHHV NVSFGEDDVKDPWYPMGDGNMLDSVHMGIHAAQLMGYSQIMDSYNLTTNNGAKTLNVEDH YGIAVGKPANCLIFNADNFYDELNERKELLYSIHQGKVIVQTQPAQIKTNF >gi|269838498|gb|ACXB01000013.1| GENE 168 172399 - 173763 1450 454 aa, chain - ## HITS:1 COG:PH1159 KEGG:ns NR:ns ## COG: PH1159 COG1457 # Protein_GI_number: 14590986 # Func_class: F Nucleotide transport and metabolism # Function: Purine-cytosine permease and related proteins # Organism: Pyrococcus horikoshii # 15 422 10 380 422 125 24.0 2e-28 MDSKYRVESIKKQYRHMTYWDMFATWIGANANNGTWFIGGIIAACGFWGGIKALLIASSI SYIFLMMVGYMGTKTGVSTMALSRASFGIRGSIIPSLVNLTQFVGWTAVNTFIAATSVSY ILHSFWGWPIYGQPGGNLGLIVGIVVMSILHLLSIVAGQRSIQIIERIGIILVIIFVIWE SVVVFHDVSFSQIAHWQVPHHLKMDQGTAMDTLAAFNLAWVTAGADFTRFTKKVNTATTA PFLGANLGVFGFAFIGLSATISIAVSSGVYDPNNSDPSTIANRLGLGVIAMIVIMLTSMT ANAVNIQAAGSALNNMFSKLSLKQSLLITTIIATVVTFIPVFYGSFLTTFTAFLDYVGMV LGPIISIMVVDYFLIAKQRYAAKDLGDPHGPYWYHKGIHWTAFGLWIFGVLIYSALQRVS FVQKYTGATFLVMILIGCLYWGIMQLEKGKHNAN Prediction of potential genes in microbial genomes Time: Fri May 27 06:49:54 2011 Seq name: gi|269838497|gb|ACXB01000014.1| Pediococcus acidilactici 7_4 cont1.14, whole genome shotgun sequence Length of sequence - 315355 bp Number of predicted genes - 329, with homology - 312 Number of transcription units - 139, operones - 78 average op.length - 3.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 76 - 450 192 ## PROTEIN SUPPORTED gi|116511722|ref|YP_808938.1| RNA-binding protein - Prom 472 - 531 7.3 + Prom 422 - 481 5.7 2 2 Tu 1 . + CDS 639 - 1286 186 ## PROTEIN SUPPORTED gi|154175107|ref|YP_001408238.1| ribosomal protein L22 + Term 1408 - 1447 0.2 3 3 Tu 1 . - CDS 1313 - 1684 264 ## PEPE_1226 hypothetical protein - Prom 1740 - 1799 3.6 4 4 Op 1 1/0.167 - CDS 1930 - 2703 885 ## COG0647 Predicted sugar phosphatases of the HAD superfamily 5 4 Op 2 . - CDS 2703 - 3236 482 ## COG4470 Uncharacterized protein conserved in bacteria - Prom 3258 - 3317 5.0 6 5 Tu 1 . - CDS 3336 - 3944 478 ## COG4186 Predicted phosphoesterase or phosphohydrolase - Prom 3998 - 4057 4.1 - Term 4042 - 4082 9.0 7 6 Op 1 . - CDS 4143 - 5147 843 ## COG0827 Adenine-specific DNA methylase 8 6 Op 2 . - CDS 5164 - 5487 265 ## PEPE_1232 hypothetical protein 9 6 Op 3 . - CDS 5447 - 5881 407 ## PEPE_1233 hypothetical protein - Prom 5949 - 6008 3.9 10 7 Op 1 . - CDS 6028 - 6474 428 ## PEPE_1235 hypothetical protein 11 7 Op 2 6/0.000 - CDS 6458 - 6766 288 ## COG4537 Competence protein ComGC 12 7 Op 3 24/0.000 - CDS 6766 - 7797 680 ## COG1459 Type II secretory pathway, component PulF 13 7 Op 4 . - CDS 7751 - 8713 680 ## COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB - Prom 8804 - 8863 4.9 - Term 8838 - 8888 15.1 14 8 Op 1 . - CDS 9010 - 9921 1157 ## COG0524 Sugar kinases, ribokinase family - Prom 9947 - 10006 5.0 - Term 10011 - 10052 7.1 15 8 Op 2 . - CDS 10065 - 10802 975 ## COG0217 Uncharacterized conserved protein - Prom 10847 - 10906 5.9 16 9 Op 1 . - CDS 11019 - 12452 1451 ## COG2132 Putative multicopper oxidases 17 9 Op 2 . - CDS 12449 - 12622 170 ## - Prom 12645 - 12704 9.3 - Term 12760 - 12796 4.1 18 10 Tu 1 . - CDS 12865 - 13422 757 ## COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) - Prom 13618 - 13677 7.3 + Prom 13400 - 13459 6.1 19 11 Tu 1 . + CDS 13499 - 13573 87 ## - Term 13619 - 13673 7.4 20 12 Op 1 . - CDS 13710 - 14264 610 ## COG1335 Amidases related to nicotinamidase 21 12 Op 2 . - CDS 14297 - 15598 1238 ## COG0015 Adenylosuccinate lyase - Prom 15632 - 15691 8.2 + Prom 15691 - 15750 5.5 22 13 Tu 1 . + CDS 15781 - 17073 1356 ## COG0104 Adenylosuccinate synthase + Term 17118 - 17164 4.1 - Term 17105 - 17152 8.1 23 14 Op 1 . - CDS 17162 - 17956 689 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 24 14 Op 2 . - CDS 17979 - 18818 835 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase - Prom 18846 - 18905 8.7 + Prom 18853 - 18912 6.0 25 15 Tu 1 . + CDS 18946 - 19314 226 ## COG1733 Predicted transcriptional regulators + Term 19338 - 19384 11.3 - Term 19320 - 19379 17.0 26 16 Tu 1 . - CDS 19423 - 20163 762 ## PEPE_1248 hypothetical protein - Prom 20397 - 20456 7.5 + Prom 20384 - 20443 8.9 27 17 Tu 1 . + CDS 20518 - 21249 994 ## COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) + Term 21278 - 21346 13.4 - Term 21340 - 21386 6.0 28 18 Tu 1 . - CDS 21508 - 22509 1238 ## COG1609 Transcriptional regulators - Prom 22733 - 22792 2.7 + Prom 22477 - 22536 8.4 29 19 Tu 1 . + CDS 22673 - 23767 1054 ## COG0006 Xaa-Pro aminopeptidase + Term 23799 - 23850 13.6 - Term 23787 - 23838 14.3 30 20 Op 1 . - CDS 23866 - 24216 549 ## PEPE_1253 hypothetical protein 31 20 Op 2 . - CDS 24221 - 24640 529 ## COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain + Prom 24676 - 24735 4.8 32 21 Tu 1 . + CDS 24764 - 25609 655 ## COG0668 Small-conductance mechanosensitive channel + Term 25682 - 25715 -1.0 - Term 25710 - 25751 5.2 33 22 Op 1 3/0.000 - CDS 25760 - 26353 353 ## PROTEIN SUPPORTED gi|71274727|ref|ZP_00651015.1| Ham1-like protein 34 22 Op 2 . - CDS 26363 - 27160 499 ## COG0796 Glutamate racemase - Prom 27191 - 27250 5.9 - Term 27295 - 27341 9.2 35 23 Tu 1 . - CDS 27410 - 29809 2213 ## COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase - Term 30197 - 30264 16.1 36 24 Op 1 3/0.000 - CDS 30300 - 30611 388 ## COG0526 Thiol-disulfide isomerase and thioredoxins - Prom 30649 - 30708 7.7 37 24 Op 2 . - CDS 30710 - 33067 2247 ## COG1193 Mismatch repair ATPase (MutS family) - Term 33087 - 33139 3.4 38 25 Op 1 7/0.000 - CDS 33164 - 33445 499 ## COG3906 Uncharacterized protein conserved in bacteria 39 25 Op 2 6/0.000 - CDS 33455 - 33895 509 ## COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) 40 25 Op 3 . - CDS 33895 - 34176 347 ## COG4472 Uncharacterized protein conserved in bacteria - Prom 34201 - 34260 4.8 41 26 Tu 1 . - CDS 34390 - 34566 77 ## 42 27 Tu 1 . + CDS 34556 - 34666 70 ## + Term 34856 - 34897 3.2 43 28 Tu 1 . - CDS 34635 - 37280 2824 ## COG0013 Alanyl-tRNA synthetase - Prom 37305 - 37364 3.9 44 29 Tu 1 . - CDS 37552 - 38913 1114 ## COG0513 Superfamily II DNA and RNA helicases - Prom 39045 - 39104 2.1 - Term 38999 - 39045 9.3 45 30 Op 1 . - CDS 39170 - 40105 765 ## PROTEIN SUPPORTED gi|149007035|ref|ZP_01830704.1| 50S ribosomal protein L31 type B 46 30 Op 2 . - CDS 40186 - 41310 1025 ## COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair 47 30 Op 3 . - CDS 41332 - 42819 1358 ## COG0364 Glucose-6-phosphate 1-dehydrogenase - Prom 42988 - 43047 4.3 48 31 Op 1 15/0.000 - CDS 43050 - 43433 505 ## COG1862 Preprotein translocase subunit YajC 49 31 Op 2 17/0.000 - CDS 43498 - 44640 886 ## COG0343 Queuine/archaeosine tRNA-ribosyltransferase 50 31 Op 3 4/0.000 - CDS 44660 - 45694 1086 ## COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) 51 31 Op 4 29/0.000 - CDS 45707 - 46720 902 ## COG2255 Holliday junction resolvasome, helicase subunit 52 31 Op 5 1/0.167 - CDS 46731 - 47318 684 ## COG0632 Holliday junction resolvasome, DNA-binding subunit 53 31 Op 6 6/0.000 - CDS 47364 - 49286 1463 ## COG0323 DNA mismatch repair enzyme (predicted ATPase) 54 31 Op 7 . - CDS 49298 - 51820 1997 ## COG0249 Mismatch repair ATPase (MutS family) 55 31 Op 8 . - CDS 51759 - 51887 181 ## - Prom 51936 - 51995 10.5 - Term 51942 - 51989 1.6 56 32 Op 1 . - CDS 52012 - 53571 1586 ## COG1418 Predicted HD superfamily hydrolase - Prom 53592 - 53651 2.8 57 32 Op 2 . - CDS 53669 - 53827 93 ## 58 32 Op 3 . - CDS 53840 - 54895 1234 ## COG0468 RecA/RadA recombinase 59 32 Op 4 . - CDS 54911 - 55000 65 ## 60 32 Op 5 4/0.000 - CDS 55066 - 56307 272 ## PROTEIN SUPPORTED gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase - Prom 56348 - 56407 3.9 61 32 Op 6 5/0.000 - CDS 56445 - 57026 286 ## PROTEIN SUPPORTED gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase 62 32 Op 7 1/0.167 - CDS 57039 - 57917 878 ## COG1426 Uncharacterized protein conserved in bacteria 63 32 Op 8 4/0.000 - CDS 57960 - 58685 823 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 64 32 Op 9 14/0.000 - CDS 58702 - 59994 1064 ## COG0612 Predicted Zn-dependent peptidases 65 32 Op 10 . - CDS 59994 - 61253 1099 ## COG0612 Predicted Zn-dependent peptidases - Prom 61280 - 61339 5.3 - Term 61281 - 61326 12.3 66 33 Op 1 1/0.167 - CDS 61414 - 62841 1335 ## COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes - Term 62877 - 62914 6.4 67 33 Op 2 16/0.000 - CDS 62924 - 63709 624 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 68 33 Op 3 34/0.000 - CDS 63743 - 64378 382 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 69 33 Op 4 . - CDS 64396 - 65046 656 ## COG0765 ABC-type amino acid transport system, permease component - Prom 65236 - 65295 6.6 70 34 Op 1 . - CDS 65545 - 66090 501 ## PEPE_1287 rod shape-determining protein MreD 71 34 Op 2 . - CDS 66100 - 66945 933 ## COG1792 Cell shape-determining protein - Prom 66965 - 67024 4.4 72 35 Op 1 . - CDS 67034 - 67702 510 ## COG2003 DNA repair proteins 73 35 Op 2 8/0.000 - CDS 67745 - 69019 975 ## COG0285 Folylpolyglutamate synthase - Prom 69065 - 69124 2.3 - Term 69040 - 69087 9.3 74 35 Op 3 . - CDS 69178 - 71841 2579 ## COG0525 Valyl-tRNA synthetase - Prom 71942 - 72001 1.7 - Term 72064 - 72113 0.5 75 36 Tu 1 . - CDS 72140 - 72631 524 ## COG2077 Peroxiredoxin 76 37 Op 1 7/0.000 - CDS 72801 - 74018 1194 ## COG0301 Thiamine biosynthesis ATP pyrophosphatase 77 37 Op 2 3/0.000 - CDS 74031 - 75185 1185 ## COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes - Prom 75253 - 75312 6.7 - Term 75319 - 75361 10.1 78 37 Op 3 . - CDS 75421 - 77130 1912 ## COG4477 Negative regulator of septation ring formation - Prom 77215 - 77274 10.8 + Prom 77155 - 77214 5.8 79 38 Op 1 . + CDS 77294 - 77779 304 ## PROTEIN SUPPORTED gi|15902812|ref|NP_358362.1| hypothetical protein spr0768 + Term 77805 - 77847 -1.0 80 38 Op 2 . + CDS 77853 - 77942 54 ## PROTEIN SUPPORTED gi|229552047|ref|ZP_04440772.1| ribosomal protein S4 81 38 Op 3 . + CDS 77962 - 78570 991 ## PROTEIN SUPPORTED gi|116493045|ref|YP_804780.1| 30S ribosomal protein S4 + Term 78571 - 78610 6.1 82 39 Tu 1 . + CDS 78628 - 79905 1065 ## COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase + Term 80124 - 80154 1.0 + Prom 80085 - 80144 2.1 83 40 Op 1 . + CDS 80172 - 80450 258 ## 84 40 Op 2 . + CDS 80517 - 80972 610 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins + Term 81064 - 81123 7.8 - Term 81149 - 81196 14.1 85 41 Op 1 . - CDS 81272 - 81835 257 ## PROTEIN SUPPORTED gi|157164512|ref|YP_001467500.1| 50S ribosomal protein L24 (BL23; 12 kDa DNA-binding protein; HPB12) 86 41 Op 2 . - CDS 81882 - 82937 1357 ## COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes - Prom 83002 - 83061 7.0 87 42 Tu 1 . - CDS 83065 - 84039 501 ## PROTEIN SUPPORTED gi|170016569|ref|YP_001727488.1| ribosomal protein S2 - Prom 84065 - 84124 4.8 + Prom 84130 - 84189 6.2 88 43 Tu 1 . + CDS 84218 - 85642 1492 ## COG0531 Amino acid transporters + Term 85754 - 85803 15.2 - Term 85860 - 85919 -0.1 89 44 Op 1 . - CDS 85957 - 86721 600 ## COG5523 Predicted integral membrane protein 90 44 Op 2 . - CDS 86729 - 87517 700 ## PEPE_1306 ABC transporter, permease protein 91 44 Op 3 8/0.000 - CDS 87510 - 88376 196 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 92 44 Op 4 . - CDS 88373 - 88744 448 ## COG1725 Predicted transcriptional regulators - Prom 88790 - 88849 6.0 - Term 89013 - 89074 2.1 93 45 Op 1 22/0.000 - CDS 89128 - 89943 517 ## COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen 94 45 Op 2 32/0.000 - CDS 89954 - 90634 672 ## COG2011 ABC-type metal ion transport system, permease component 95 45 Op 3 . - CDS 90624 - 91661 1088 ## COG1135 ABC-type metal ion transport system, ATPase component - Term 91841 - 91880 -0.6 96 46 Op 1 . - CDS 92089 - 93303 1229 ## COG0772 Bacterial cell division membrane protein 97 46 Op 2 . - CDS 93319 - 93540 277 ## PEPE_1313 hypothetical protein 98 46 Op 3 . - CDS 93549 - 93788 205 ## COG0759 Uncharacterized conserved protein 99 46 Op 4 . - CDS 93820 - 94041 305 ## PEPE_1315 hypothetical protein - Prom 94066 - 94125 7.5 100 47 Op 1 42/0.000 - CDS 94249 - 94668 541 ## COG0355 F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) 101 47 Op 2 42/0.000 - CDS 94680 - 96089 1498 ## COG0055 F0F1-type ATP synthase, beta subunit 102 47 Op 3 42/0.000 - CDS 96113 - 97036 833 ## COG0224 F0F1-type ATP synthase, gamma subunit 103 47 Op 4 41/0.000 - CDS 97074 - 98591 1590 ## COG0056 F0F1-type ATP synthase, alpha subunit 104 47 Op 5 38/0.000 - CDS 98621 - 99163 628 ## COG0712 F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) 105 47 Op 6 . - CDS 99160 - 99681 781 ## COG0711 F0F1-type ATP synthase, subunit b 106 47 Op 7 . - CDS 99727 - 99939 352 ## lp_2369 F0F1 ATP synthase subunit C (EC:3.6.3.14) 107 47 Op 8 . - CDS 99972 - 100688 456 ## COG0356 F0F1-type ATP synthase, subunit a - Prom 100732 - 100791 5.7 - Term 100762 - 100796 1.1 108 48 Op 1 36/0.000 - CDS 100929 - 103532 1750 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 109 48 Op 2 . - CDS 103542 - 104243 317 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) - Prom 104275 - 104334 4.8 + Prom 104234 - 104293 7.7 110 49 Tu 1 . + CDS 104528 - 104638 66 ## - Term 104492 - 104535 8.5 111 50 Op 1 5/0.000 - CDS 104600 - 105229 730 ## COG0035 Uracil phosphoribosyltransferase 112 50 Op 2 1/0.167 - CDS 105299 - 106531 1280 ## COG0112 Glycine/serine hydroxymethyltransferase 113 50 Op 3 10/0.000 - CDS 106544 - 107566 921 ## COG0009 Putative translation factor (SUA5) 114 50 Op 4 32/0.000 - CDS 107568 - 108425 399 ## PROTEIN SUPPORTED gi|225874212|ref|YP_002755671.1| ribosomal protein L11 methyltransferase 115 50 Op 5 3/0.000 - CDS 108418 - 109497 1226 ## COG0216 Protein chain release factor A 116 50 Op 6 . - CDS 109501 - 110085 524 ## COG1435 Thymidine kinase - Prom 110114 - 110173 7.9 + Prom 110114 - 110173 7.6 117 51 Op 1 10/0.000 + CDS 110412 - 111758 1111 ## COG0769 UDP-N-acetylmuramyl tripeptide synthase 118 51 Op 2 . + CDS 111761 - 112465 702 ## COG3442 Predicted glutamine amidotransferase + Term 112481 - 112530 6.2 - Term 112469 - 112518 6.2 119 52 Op 1 . - CDS 112549 - 113517 952 ## COG1482 Phosphomannose isomerase 120 52 Op 2 . - CDS 113585 - 114589 786 ## COG1680 Beta-lactamase class C and other penicillin binding proteins - Prom 114754 - 114813 7.0 - Term 114739 - 114793 16.6 121 53 Op 1 35/0.000 - CDS 114934 - 116805 229 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 122 53 Op 2 . - CDS 116798 - 118537 196 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 123 53 Op 3 . - CDS 118541 - 119197 536 ## COG1309 Transcriptional regulator - Prom 119230 - 119289 7.3 124 54 Op 1 . + CDS 119308 - 119649 374 ## PEPE_1339 hypothetical protein 125 54 Op 2 . + CDS 119663 - 120127 456 ## COG0782 Transcription elongation factor + Term 120206 - 120272 30.0 + TRNA 120188 - 120260 59.2 # Glu CTC 0 0 + TRNA 120266 - 120341 68.6 # Gln CTG 0 0 - Term 120390 - 120441 7.2 126 55 Tu 1 . - CDS 120457 - 121422 836 ## PEPE_0917 beta-lactamase class A - Prom 121496 - 121555 1.9 127 56 Tu 1 . - CDS 122060 - 122347 254 ## COG0431 Predicted flavoprotein - Prom 122398 - 122457 6.1 + Prom 122452 - 122511 6.5 128 57 Tu 1 . + CDS 122736 - 123251 456 ## COG4732 Predicted membrane protein + Term 123260 - 123305 2.2 - Term 123241 - 123297 15.9 129 58 Op 1 . - CDS 123318 - 124670 1534 ## COG0166 Glucose-6-phosphate isomerase - Prom 124697 - 124756 10.3 - Term 124878 - 124916 2.0 130 58 Op 2 . - CDS 124939 - 125808 948 ## COG4975 Putative glucose uptake permease - Prom 125857 - 125916 9.2 + Prom 125869 - 125928 11.1 131 59 Tu 1 . + CDS 126094 - 126957 1214 ## COG0191 Fructose/tagatose bisphosphate aldolase + Term 126979 - 127014 3.3 - Term 126897 - 126951 2.7 132 60 Op 1 40/0.000 - CDS 127155 - 128597 1232 ## COG0642 Signal transduction histidine kinase 133 60 Op 2 . - CDS 128601 - 129323 719 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Term 129719 - 129765 11.4 134 61 Op 1 . - CDS 129983 - 130525 416 ## LCABL_22770 hypothetical protein - Prom 130547 - 130606 1.9 - Term 130631 - 130679 14.2 135 61 Op 2 . - CDS 130728 - 131408 761 ## PEPE_1355 aggregation promoting factor-like surface protein - Prom 131473 - 131532 4.3 - Term 131531 - 131576 2.8 136 62 Tu 1 . - CDS 131646 - 132290 723 ## PEPE_1356 hypothetical protein - Term 132613 - 132666 8.2 137 63 Tu 1 . - CDS 132755 - 133744 614 ## COG0657 Esterase/lipase - Term 133944 - 133992 6.0 138 64 Tu 1 2/0.100 - CDS 134063 - 135415 1470 ## COG2610 H+/gluconate symporter and related permeases - Prom 135488 - 135547 3.6 - Term 135458 - 135515 8.0 139 65 Op 1 1/0.167 - CDS 135597 - 137159 1823 ## COG1070 Sugar (pentulose and hexulose) kinases 140 65 Op 2 . - CDS 137172 - 138074 1102 ## COG1023 Predicted 6-phosphogluconate dehydrogenase - Prom 138109 - 138168 8.3 + Prom 138050 - 138109 5.7 141 66 Tu 1 . + CDS 138225 - 139067 889 ## COG1737 Transcriptional regulators + Term 139121 - 139167 3.5 - Term 139202 - 139245 -0.7 142 67 Tu 1 . - CDS 139302 - 139538 329 ## gi|227508470|ref|ZP_03938519.1| hypothetical protein HMPREF0496_0633 - Prom 139570 - 139629 8.6 143 68 Op 1 . - CDS 139664 - 140512 912 ## PEPE_0068 hypothetical protein 144 68 Op 2 . - CDS 140502 - 141947 1226 ## COG0438 Glycosyltransferase 145 68 Op 3 . - CDS 141987 - 142796 540 ## PEPE_0066 hypothetical protein 146 68 Op 4 . - CDS 142786 - 144384 815 ## PEPE_0065 hypothetical protein 147 68 Op 5 . - CDS 144371 - 144514 73 ## PEPE_0064 hypothetical protein 148 68 Op 6 . - CDS 144511 - 146037 776 ## PEPE_0064 hypothetical protein 149 68 Op 7 . - CDS 146057 - 146977 289 ## PROTEIN SUPPORTED gi|163796899|ref|ZP_02190856.1| 30S ribosomal protein S11 150 68 Op 8 . - CDS 146869 - 147291 328 ## PEPE_0063 protein translocase subunit SecY/sec61 alpha 151 68 Op 9 . - CDS 147288 - 149657 2173 ## COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase) - Prom 149716 - 149775 7.4 152 69 Tu 1 . - CDS 150151 - 150240 62 ## - Prom 150268 - 150327 4.5 153 70 Op 1 . - CDS 150352 - 151155 395 ## PEPE_0070 hypothetical protein 154 70 Op 2 . - CDS 151167 - 151901 433 ## PEPE_0069 hypothetical protein - Prom 152016 - 152075 7.6 - Term 152087 - 152128 8.1 155 71 Op 1 5/0.000 - CDS 152143 - 152505 398 ## COG4272 Predicted membrane protein 156 71 Op 2 . - CDS 152506 - 153351 964 ## COG0730 Predicted permeases - Prom 153404 - 153463 7.8 - Term 153415 - 153463 12.1 157 72 Tu 1 . - CDS 153516 - 155684 2118 ## COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily - Prom 155719 - 155778 4.7 158 73 Tu 1 . - CDS 155788 - 157356 1545 ## COG4108 Peptide chain release factor RF-3 - Term 157369 - 157413 6.1 159 74 Op 1 1/0.167 - CDS 157423 - 157827 482 ## COG0615 Cytidylyltransferase 160 74 Op 2 . - CDS 157903 - 159033 1160 ## COG0628 Predicted permease - Term 159073 - 159109 3.1 161 75 Op 1 2/0.100 - CDS 159113 - 159667 521 ## COG3557 Uncharacterized domain/protein associated with RNAses G and E 162 75 Op 2 . - CDS 159760 - 160575 739 ## COG2137 Uncharacterized protein conserved in bacteria + Prom 160541 - 160600 8.2 163 76 Tu 1 . + CDS 160628 - 161086 732 ## COG0716 Flavodoxins + Term 161104 - 161147 9.3 - Term 161218 - 161277 11.5 164 77 Tu 1 . - CDS 161287 - 161913 633 ## COG3153 Predicted acetyltransferase - Prom 162039 - 162098 3.8 - Term 162059 - 162103 -0.6 165 78 Op 1 . - CDS 162124 - 162726 310 ## DSY0717 hypothetical protein 166 78 Op 2 . - CDS 162748 - 163635 725 ## COG1715 Restriction endonuclease - Prom 163706 - 163765 6.8 + Prom 163611 - 163670 8.4 167 79 Tu 1 . + CDS 163855 - 164175 345 ## COG2076 Membrane transporters of cations and cationic drugs + Term 164191 - 164246 11.5 - Term 164186 - 164227 2.5 168 80 Tu 1 . - CDS 164305 - 165672 1289 ## COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase - Prom 165812 - 165871 4.4 169 81 Op 1 2/0.100 - CDS 165946 - 166944 1052 ## COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase 170 81 Op 2 21/0.000 - CDS 166972 - 168399 1460 ## COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) 171 81 Op 3 31/0.000 - CDS 168399 - 169859 439 ## PROTEIN SUPPORTED gi|163737840|ref|ZP_02145257.1| 30S ribosomal protein S4 172 81 Op 4 1/0.167 - CDS 169859 - 170173 456 ## COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit 173 81 Op 5 . - CDS 170193 - 171350 975 ## COG4851 Protein involved in sex pheromone biosynthesis 174 81 Op 6 . - CDS 171426 - 173699 2194 ## COG0210 Superfamily I DNA and RNA helicases - Term 173747 - 173776 0.5 175 82 Op 1 . - CDS 173790 - 174929 1109 ## COG0026 Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) 176 82 Op 2 . - CDS 174963 - 175535 716 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins 177 82 Op 3 . - CDS 175557 - 176198 467 ## COG1705 Muramidase (flagellum-specific) - Prom 176229 - 176288 3.8 178 83 Tu 1 . - CDS 176299 - 176907 707 ## COG4684 Predicted membrane protein - Prom 176934 - 176993 6.3 + Prom 177233 - 177292 5.5 179 84 Op 1 1/0.167 + CDS 177325 - 179124 1540 ## COG1061 DNA or RNA helicases of superfamily II 180 84 Op 2 . + CDS 179152 - 180171 569 ## COG1061 DNA or RNA helicases of superfamily II 181 84 Op 3 . + CDS 180218 - 181336 908 ## LSA0827 lipoprotein precursor + Term 181373 - 181417 8.3 - Term 181361 - 181405 3.5 182 85 Tu 1 . - CDS 181601 - 181858 308 ## PEPE_1383 hypothetical protein - Prom 181894 - 181953 4.3 + Prom 181926 - 181985 3.2 183 86 Tu 1 . + CDS 182014 - 182223 189 ## PEPE_1384 XRE family transcriptional regulator + Term 182414 - 182456 8.1 - Term 182610 - 182659 5.2 184 87 Op 1 . - CDS 182785 - 182988 269 ## 185 87 Op 2 1/0.167 - CDS 183020 - 184321 1118 ## COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair - Prom 184353 - 184412 5.3 - Term 184381 - 184425 8.3 186 88 Op 1 . - CDS 184467 - 185843 970 ## COG0531 Amino acid transporters 187 88 Op 2 . - CDS 185855 - 186955 1067 ## COG0686 Alanine dehydrogenase - Prom 186991 - 187050 5.3 - Term 187202 - 187250 8.0 188 89 Tu 1 . - CDS 187276 - 187494 298 ## lp_0126 stress-responsive transcription regulator (putative) - Prom 187628 - 187687 5.6 - Term 187761 - 187795 4.0 189 90 Op 1 59/0.000 - CDS 187821 - 188213 658 ## PROTEIN SUPPORTED gi|116493130|ref|YP_804865.1| SSU ribosomal protein S9P 190 90 Op 2 7/0.000 - CDS 188228 - 188671 695 ## PROTEIN SUPPORTED gi|116493131|ref|YP_804866.1| 50S ribosomal protein L13 - Prom 188703 - 188762 2.2 191 90 Op 3 8/0.000 - CDS 188797 - 189543 703 ## COG0101 Pseudouridylate synthase 192 90 Op 4 34/0.000 - CDS 189551 - 190345 575 ## COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters 193 90 Op 5 15/0.000 - CDS 190338 - 191207 421 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 194 90 Op 6 6/0.000 - CDS 191177 - 192019 766 ## COG1122 ABC-type cobalt transport system, ATPase component - Prom 192044 - 192103 6.4 - Term 192080 - 192111 -0.7 195 90 Op 7 50/0.000 - CDS 192199 - 192582 617 ## PROTEIN SUPPORTED gi|116493136|ref|YP_804871.1| 50S ribosomal protein L17P 196 90 Op 8 32/0.000 - CDS 192604 - 193548 782 ## COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD subunit 197 90 Op 9 48/0.000 - CDS 193632 - 194021 647 ## PROTEIN SUPPORTED gi|116493138|ref|YP_804873.1| 30S ribosomal protein S11 198 90 Op 10 . - CDS 194042 - 194407 593 ## PROTEIN SUPPORTED gi|116493139|ref|YP_804874.1| 30S ribosomal protein S13 199 90 Op 11 . - CDS 194433 - 194552 211 ## PROTEIN SUPPORTED gi|116334246|ref|YP_795773.1| 50S ribosomal protein L36 200 90 Op 12 6/0.000 - CDS 194580 - 194798 306 ## PROTEIN SUPPORTED gi|15900168|ref|NP_344772.1| translation initiation factor IF-1 - Prom 194878 - 194937 5.6 - Term 194836 - 194872 3.0 201 90 Op 13 28/0.000 - CDS 194951 - 195610 586 ## COG0563 Adenylate kinase and related kinases 202 90 Op 14 53/0.000 - CDS 195642 - 196940 735 ## PROTEIN SUPPORTED gi|163796899|ref|ZP_02190856.1| 30S ribosomal protein S11 203 90 Op 15 48/0.000 - CDS 196940 - 197374 661 ## PROTEIN SUPPORTED gi|116493144|ref|YP_804879.1| 50S ribosomal protein L15P 204 90 Op 16 50/0.000 - CDS 197401 - 197583 286 ## PROTEIN SUPPORTED gi|116493145|ref|YP_804880.1| 50S ribosomal protein L30 205 90 Op 17 56/0.000 - CDS 197597 - 198100 800 ## PROTEIN SUPPORTED gi|116493146|ref|YP_804881.1| 30S ribosomal protein S5 206 90 Op 18 46/0.000 - CDS 198122 - 198478 570 ## PROTEIN SUPPORTED gi|116493147|ref|YP_804882.1| 50S ribosomal protein L18 207 90 Op 19 55/0.000 - CDS 198531 - 199067 861 ## PROTEIN SUPPORTED gi|116493148|ref|YP_804883.1| 50S ribosomal protein L6 208 90 Op 20 4/0.000 - CDS 199094 - 199492 650 ## PROTEIN SUPPORTED gi|116493149|ref|YP_804884.1| 30S ribosomal protein S8 209 90 Op 21 . - CDS 199526 - 199711 325 ## PROTEIN SUPPORTED gi|116493150|ref|YP_804885.1| SSU ribosomal protein S14P 210 90 Op 22 48/0.000 - CDS 199730 - 200272 867 ## PROTEIN SUPPORTED gi|116493151|ref|YP_804886.1| 50S ribosomal protein L5 211 90 Op 23 57/0.000 - CDS 200300 - 200611 506 ## PROTEIN SUPPORTED gi|116493152|ref|YP_804887.1| 50S ribosomal protein L24P 212 90 Op 24 50/0.000 - CDS 200645 - 201013 596 ## PROTEIN SUPPORTED gi|116493153|ref|YP_804888.1| 50S ribosomal protein L14P 213 90 Op 25 50/0.000 - CDS 201060 - 201326 431 ## PROTEIN SUPPORTED gi|116493154|ref|YP_804889.1| SSU ribosomal protein S17P 214 90 Op 26 50/0.000 - CDS 201353 - 201547 314 ## PROTEIN SUPPORTED gi|116493155|ref|YP_804890.1| 50S ribosomal protein L29 215 90 Op 27 50/0.000 - CDS 201537 - 201971 729 ## PROTEIN SUPPORTED gi|116493156|ref|YP_804891.1| 50S ribosomal protein L16 216 90 Op 28 61/0.000 - CDS 201974 - 202645 1088 ## PROTEIN SUPPORTED gi|116493157|ref|YP_804892.1| SSU ribosomal protein S3P 217 90 Op 29 59/0.000 - CDS 202658 - 203005 512 ## PROTEIN SUPPORTED gi|227896774|ref|ZP_04014579.1| 50S ribosomal protein L22 218 90 Op 30 60/0.000 - CDS 203018 - 203299 477 ## PROTEIN SUPPORTED gi|116493159|ref|YP_804894.1| SSU ribosomal protein S19P 219 90 Op 31 61/0.000 - CDS 203326 - 204174 1402 ## PROTEIN SUPPORTED gi|116493160|ref|YP_804895.1| 50S ribosomal protein L2 220 90 Op 32 61/0.000 - CDS 204194 - 204481 446 ## PROTEIN SUPPORTED gi|116493161|ref|YP_804896.1| 50S ribosomal protein L23P 221 90 Op 33 58/0.000 - CDS 204481 - 205104 1000 ## PROTEIN SUPPORTED gi|116493162|ref|YP_804897.1| 50S ribosomal protein L4P 222 90 Op 34 40/0.000 - CDS 205122 - 205760 1020 ## PROTEIN SUPPORTED gi|116493163|ref|YP_804898.1| 50S ribosomal protein L3P 223 90 Op 35 4/0.000 - CDS 205788 - 206096 512 ## PROTEIN SUPPORTED gi|116493164|ref|YP_804899.1| 30S ribosomal protein S10 - Prom 206259 - 206318 5.8 - Term 206312 - 206369 13.6 224 91 Op 1 51/0.000 - CDS 206381 - 208474 2320 ## COG0480 Translation elongation factors (GTPases) - Prom 208525 - 208584 4.6 - Term 208549 - 208583 1.3 225 91 Op 2 56/0.000 - CDS 208593 - 209063 786 ## PROTEIN SUPPORTED gi|116493166|ref|YP_804901.1| 30S ribosomal protein S7 226 91 Op 3 . - CDS 209079 - 209492 700 ## PROTEIN SUPPORTED gi|116493167|ref|YP_804902.1| 30S ribosomal protein S12 - Prom 209520 - 209579 9.1 + Prom 209471 - 209530 5.6 227 92 Op 1 . + CDS 209773 - 210483 338 ## SUN_1839 type 4 prepilin peptidase 228 92 Op 2 . + CDS 210512 - 211459 1055 ## COG1957 Inosine-uridine nucleoside N-ribohydrolase + Term 211486 - 211530 10.7 - Term 211474 - 211518 13.2 229 93 Op 1 58/0.000 - CDS 211534 - 215175 3302 ## COG0086 DNA-directed RNA polymerase, beta' subunit/160 kD subunit 230 93 Op 2 . - CDS 215206 - 218805 3695 ## COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit - Prom 218833 - 218892 6.4 - Term 218881 - 218928 8.0 231 94 Op 1 3/0.000 - CDS 219034 - 221505 2332 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 232 94 Op 2 . - CDS 221532 - 221996 357 ## PROTEIN SUPPORTED gi|163764774|ref|ZP_02171828.1| ribosomal protein L14 - Prom 222029 - 222088 8.0 233 95 Tu 1 . - CDS 222234 - 224039 1868 ## COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] - Prom 224253 - 224312 7.5 - TRNA 224374 - 224447 83.0 # Pro CGG 0 0 - TRNA 224517 - 224590 70.8 # Arg ACG 0 0 - TRNA 224786 - 224859 69.2 # Arg ACG 0 0 - TRNA 224876 - 224947 79.2 # Gly GCC 0 0 - TRNA 224952 - 225024 90.1 # Thr TGT 0 0 - TRNA 225035 - 225116 64.2 # Leu TAG 0 0 - Term 224866 - 224907 1.1 234 96 Tu 1 . - CDS 225080 - 225208 96 ## - Prom 225242 - 225301 8.3 - TRNA 225151 - 225223 87.2 # Val TAC 0 0 - Term 225358 - 225406 10.4 235 97 Tu 1 . - CDS 225463 - 226743 1423 ## COG0172 Seryl-tRNA synthetase - Prom 226956 - 227015 4.1 - Term 226760 - 226813 13.9 236 98 Op 1 . - CDS 227026 - 227658 601 ## COG1428 Deoxynucleoside kinases 237 98 Op 2 . - CDS 227735 - 229198 1311 ## COG0833 Amino acid transporters - Prom 229242 - 229301 5.8 - Term 229241 - 229294 7.0 238 99 Op 1 . - CDS 229357 - 229464 96 ## 239 99 Op 2 . - CDS 229516 - 230022 515 ## PROTEIN SUPPORTED gi|116493177|ref|YP_804912.1| acetyltransferase - Prom 230089 - 230148 9.1 + Prom 230017 - 230076 5.7 240 100 Tu 1 . + CDS 230124 - 230918 719 ## COG0657 Esterase/lipase + Prom 230994 - 231053 7.7 241 101 Tu 1 . + CDS 231085 - 232335 1049 ## COG1316 Transcriptional regulator - Term 232262 - 232309 6.4 242 102 Op 1 . - CDS 232313 - 232453 60 ## 243 102 Op 2 12/0.000 - CDS 232516 - 232974 520 ## COG3610 Uncharacterized conserved protein 244 102 Op 3 . - CDS 232993 - 233736 589 ## COG2966 Uncharacterized conserved protein - Prom 233757 - 233816 9.2 245 103 Tu 1 . - CDS 233885 - 234085 304 ## COG1278 Cold shock proteins - Prom 234206 - 234265 7.3 - Term 234237 - 234277 -0.1 246 104 Tu 1 . - CDS 234295 - 235197 887 ## COG1230 Co/Zn/Cd efflux system component - Prom 235301 - 235360 5.9 - Term 235279 - 235338 13.5 247 105 Op 1 . - CDS 235426 - 236106 636 ## COG0671 Membrane-associated phospholipid phosphatase 248 105 Op 2 . - CDS 236119 - 236778 734 ## COG1418 Predicted HD superfamily hydrolase 249 105 Op 3 . - CDS 236775 - 238337 1503 ## COG1418 Predicted HD superfamily hydrolase - Prom 238365 - 238424 5.3 250 106 Op 1 . - CDS 238485 - 238916 373 ## PEPE_1449 hypothetical protein 251 106 Op 2 . - CDS 238952 - 239830 293 ## PROTEIN SUPPORTED gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit - Prom 239866 - 239925 5.0 + Prom 239890 - 239949 5.7 252 107 Op 1 . + CDS 240120 - 240674 490 ## PEPE_1451 hypothetical protein 253 107 Op 2 . + CDS 240746 - 240892 258 ## + Term 240903 - 240937 6.2 - Term 240891 - 240925 6.2 254 108 Tu 1 . - CDS 240997 - 242325 372 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 - Prom 242364 - 242423 4.7 + Prom 242440 - 242499 8.0 255 109 Tu 1 . + CDS 242525 - 243931 1580 ## COG4690 Dipeptidase + Term 243955 - 244008 8.2 - Term 243950 - 243991 3.5 256 110 Op 1 9/0.000 - CDS 244093 - 245331 1078 ## COG1668 ABC-type Na+ efflux pump, permease component 257 110 Op 2 . - CDS 245333 - 245923 430 ## COG4152 ABC-type uncharacterized transport system, ATPase component 258 110 Op 3 . - CDS 245889 - 246224 425 ## COG4152 ABC-type uncharacterized transport system, ATPase component - Prom 246365 - 246424 5.7 - Term 246312 - 246356 6.1 259 111 Tu 1 . - CDS 246427 - 246771 418 ## LJ1411 hypothetical protein - Prom 246993 - 247052 11.6 - Term 247540 - 247581 10.1 260 112 Tu 1 . - CDS 247616 - 249541 1927 ## JDM1_2245 cell surface protein precursor - Prom 249588 - 249647 9.8 + Prom 250002 - 250061 6.8 261 113 Op 1 . + CDS 250184 - 250636 539 ## gi|270291167|ref|ZP_06197390.1| predicted protein 262 113 Op 2 . + CDS 250652 - 251845 1145 ## STER_0131 hypothetical protein + Term 251861 - 251908 6.3 + Prom 251928 - 251987 6.7 263 114 Tu 1 . + CDS 252012 - 252659 767 ## LEGAS_1682 hypothetical protein + Term 252694 - 252737 5.2 - Term 252901 - 252947 3.0 264 115 Op 1 . - CDS 252955 - 253599 806 ## COG2344 AT-rich DNA-binding protein 265 115 Op 2 . - CDS 253614 - 254591 857 ## COG1680 Beta-lactamase class C and other penicillin binding proteins 266 115 Op 3 9/0.000 - CDS 254607 - 255644 708 ## PROTEIN SUPPORTED gi|227425790|ref|ZP_03908856.1| SSU ribosomal protein S18P alanine acetyltransferase 267 115 Op 4 20/0.000 - CDS 255631 - 256227 314 ## PROTEIN SUPPORTED gi|227894610|ref|ZP_04012415.1| ribosomal protein ala-acetyltransferase 268 115 Op 5 . - CDS 256208 - 256936 255 ## PROTEIN SUPPORTED gi|238855674|ref|ZP_04645973.1| ribosomal protein ala-acetyltransferase - Prom 256964 - 257023 5.7 - Term 256994 - 257045 15.6 269 116 Op 1 . - CDS 257099 - 258091 952 ## COG1087 UDP-glucose 4-epimerase 270 116 Op 2 . - CDS 258136 - 258873 551 ## COG3884 Acyl-ACP thioesterase 271 116 Op 3 2/0.100 - CDS 258907 - 259779 692 ## COG0313 Predicted methyltransferases 272 116 Op 4 1/0.167 - CDS 259781 - 260128 343 ## COG4467 Uncharacterized protein conserved in bacteria 273 116 Op 5 2/0.100 - CDS 260133 - 261143 751 ## COG0470 ATPase involved in DNA replication 274 116 Op 6 4/0.000 - CDS 261150 - 261485 478 ## COG3870 Uncharacterized protein conserved in bacteria 275 116 Op 7 1/0.167 - CDS 261501 - 262130 769 ## COG0125 Thymidylate kinase - Prom 262166 - 262225 7.6 - Term 262448 - 262494 9.0 276 117 Op 1 23/0.000 - CDS 262555 - 263154 518 ## COG0353 Recombinational DNA repair protein (RecF pathway) 277 117 Op 2 30/0.000 - CDS 263178 - 263492 507 ## COG0718 Uncharacterized protein conserved in bacteria 278 117 Op 3 2/0.100 - CDS 263508 - 265244 1856 ## COG2812 DNA polymerase III, gamma/tau subunits - Term 265267 - 265309 9.0 279 118 Op 1 . - CDS 265459 - 265908 262 ## COG0590 Cytosine/adenosine deaminases 280 118 Op 2 . - CDS 265937 - 266542 553 ## COG2813 16S RNA G1207 methylase RsmC - Prom 266562 - 266621 11.8 + Prom 266558 - 266617 9.5 281 119 Tu 1 2/0.100 + CDS 266764 - 266994 274 ## COG0695 Glutaredoxin and related proteins + Term 267027 - 267063 3.1 + Prom 267007 - 267066 8.1 282 120 Op 1 24/0.000 + CDS 267087 - 269252 1930 ## COG0209 Ribonucleotide reductase, alpha subunit 283 120 Op 2 . + CDS 269271 - 270224 985 ## COG0208 Ribonucleotide reductase, beta subunit + Term 270266 - 270307 11.1 + Prom 270299 - 270358 4.6 284 121 Tu 1 . + CDS 270453 - 270566 92 ## - Term 270500 - 270565 6.2 285 122 Op 1 47/0.000 - CDS 270576 - 270941 556 ## PROTEIN SUPPORTED gi|116493228|ref|YP_804963.1| 50S ribosomal protein L12P 286 122 Op 2 43/0.000 - CDS 270987 - 271493 753 ## PROTEIN SUPPORTED gi|116493229|ref|YP_804964.1| 50S ribosomal protein L10P - Prom 271514 - 271573 6.1 - Term 271521 - 271563 4.0 287 123 Op 1 55/0.000 - CDS 271693 - 272382 1118 ## PROTEIN SUPPORTED gi|116493230|ref|YP_804965.1| 50S ribosomal protein L1 288 123 Op 2 45/0.000 - CDS 272474 - 272899 681 ## PROTEIN SUPPORTED gi|116495732|ref|YP_807466.1| 50S ribosomal protein L11 - Prom 272962 - 273021 5.5 289 123 Op 3 . - CDS 273028 - 273573 691 ## COG0250 Transcription antiterminator - Prom 273600 - 273659 7.0 - Term 273607 - 273648 -0.7 290 124 Op 1 . - CDS 273667 - 273837 230 ## PEPE_1495 protein translocase subunit SecE/sec61 gamma 291 124 Op 2 . - CDS 273850 - 273999 249 ## PROTEIN SUPPORTED gi|116493234|ref|YP_804969.1| 50S ribosomal protein L33 292 124 Op 3 . - CDS 274053 - 274634 466 ## PEPE_1497 ComX - Prom 274672 - 274731 5.9 - Term 274719 - 274760 7.4 293 125 Op 1 7/0.000 - CDS 274771 - 275526 636 ## PROTEIN SUPPORTED gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 294 125 Op 2 8/0.000 - CDS 275519 - 275932 330 ## PROTEIN SUPPORTED gi|163764762|ref|ZP_02171816.1| ribosomal protein S13 295 125 Op 3 1/0.167 - CDS 275925 - 277343 1467 ## COG0215 Cysteinyl-tRNA synthetase - Prom 277437 - 277496 5.1 - Term 277403 - 277462 8.2 296 126 Tu 1 1/0.167 - CDS 277500 - 278987 1446 ## COG0008 Glutamyl- and glutaminyl-tRNA synthetases - Prom 279019 - 279078 6.2 - Term 279045 - 279086 5.3 297 127 Op 1 . - CDS 279112 - 280278 818 ## PROTEIN SUPPORTED gi|163764768|ref|ZP_02171822.1| ribosomal protein S5 298 127 Op 2 1/0.167 - CDS 280376 - 281746 1279 ## COG1066 Predicted ATP-dependent serine protease - Prom 281774 - 281833 3.4 299 127 Op 3 . - CDS 281840 - 282376 545 ## COG0756 dUTPase - Prom 282564 - 282623 4.2 + Prom 282356 - 282415 2.3 300 128 Op 1 . + CDS 282505 - 282828 346 ## PEPE_1505 acetyltransferase 301 128 Op 2 . + CDS 282839 - 283525 748 ## COG0120 Ribose 5-phosphate isomerase 302 128 Op 3 . + CDS 283574 - 284920 1220 ## COG3579 Aminopeptidase C + Term 285111 - 285154 9.2 - Term 285234 - 285274 -0.5 303 129 Op 1 . - CDS 285340 - 286011 482 ## COG0588 Phosphoglycerate mutase 1 304 129 Op 2 10/0.000 - CDS 286035 - 286802 774 ## COG0825 Acetyl-CoA carboxylase alpha subunit 305 129 Op 3 4/0.000 - CDS 286804 - 287586 589 ## COG0777 Acetyl-CoA carboxylase beta subunit 306 129 Op 4 . - CDS 287589 - 288884 1187 ## COG0439 Biotin carboxylase 307 129 Op 5 . - CDS 288886 - 289263 435 ## lp_0589 acetyl-CoA carboxylase, biotin carboxyl carrier protein (EC:6.4.1.2) 308 129 Op 6 . - CDS 289273 - 290241 1074 ## COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III - Prom 290270 - 290329 8.0 + Prom 290221 - 290280 9.1 309 130 Tu 1 . + CDS 290470 - 290931 560 ## PEPE_1512 hypothetical protein + Term 291041 - 291089 7.2 310 131 Op 1 . - CDS 290945 - 291118 127 ## 311 131 Op 2 . - CDS 291133 - 291633 609 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 312 131 Op 3 . - CDS 291654 - 294584 2378 ## COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain - Prom 294629 - 294688 4.5 - Term 294836 - 294882 11.1 313 132 Op 1 4/0.000 - CDS 294926 - 295306 270 ## COG4687 Uncharacterized protein conserved in bacteria - Prom 295334 - 295393 7.6 - Term 295373 - 295406 1.1 314 132 Op 2 13/0.000 - CDS 295425 - 296336 1108 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 315 132 Op 3 13/0.000 - CDS 296354 - 297160 941 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 316 132 Op 4 . - CDS 297181 - 298161 1050 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB - Prom 298195 - 298254 10.4 - TRNA 298629 - 298714 58.9 # Leu AAG 0 0 - Term 298710 - 298762 8.0 317 133 Op 1 6/0.000 - CDS 298786 - 299238 137 ## COG3091 Uncharacterized protein conserved in bacteria 318 133 Op 2 . - CDS 299235 - 301409 1653 ## PROTEIN SUPPORTED gi|51894064|ref|YP_076755.1| ribosomal protein S1-like protein - Prom 301429 - 301488 2.1 - Term 301438 - 301475 6.2 319 134 Op 1 . - CDS 301530 - 301964 436 ## PEPE_1522 hypothetical protein 320 134 Op 2 . - CDS 301966 - 304635 2498 ## COG0474 Cation transport ATPase - Prom 304800 - 304859 6.5 - Term 304665 - 304722 16.6 321 135 Op 1 5/0.000 - CDS 304861 - 305679 836 ## COG0171 NAD synthase 322 135 Op 2 . - CDS 305699 - 307162 1326 ## COG1488 Nicotinic acid phosphoribosyltransferase - Prom 307187 - 307246 6.1 + Prom 307170 - 307229 8.6 323 136 Tu 1 . + CDS 307289 - 308011 551 ## COG1922 Teichoic acid biosynthesis proteins + Term 308029 - 308078 12.1 - Term 308007 - 308072 1.4 324 137 Op 1 2/0.100 - CDS 308119 - 308820 594 ## COG2188 Transcriptional regulators 325 137 Op 2 . - CDS 308848 - 309990 1275 ## COG1820 N-acetylglucosamine-6-phosphate deacetylase 326 137 Op 3 . - CDS 310058 - 310846 970 ## COG0345 Pyrroline-5-carboxylate reductase - Prom 310873 - 310932 7.6 - Term 311113 - 311145 -0.9 327 138 Tu 1 . - CDS 311297 - 312268 859 ## COG1064 Zn-dependent alcohol dehydrogenases - Prom 312365 - 312424 5.8 - TRNA 312497 - 312571 68.6 # Gln TTG 0 0 - TRNA 312575 - 312660 75.5 # Tyr GTA 0 0 328 139 Op 1 . - CDS 312748 - 313548 499 ## COG1409 Predicted phosphohydrolases - Prom 313580 - 313639 6.3 - Term 313590 - 313628 6.3 329 139 Op 2 . - CDS 313647 - 315113 1541 ## COG3104 Dipeptide/tripeptide permease - Prom 315140 - 315199 5.3 - TRNA 315224 - 315296 74.1 # Thr CGT 0 0 Predicted protein(s) >gi|269838497|gb|ACXB01000014.1| GENE 1 76 - 450 192 124 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116511722|ref|YP_808938.1| RNA-binding protein [Lactococcus lactis subsp. cremoris SK11] # 3 121 7 126 143 78 37 3e-13 MYKLGEILEVKIVGIRDYGLFIQDKKGRKGLIHVSECDNQYIRNMHHTFDIGEKVQAVVM EDDGNRRFALSIRALKETKGNLSKYPRPINFYVNHKHFWTKSHYDAGFKPLAEHLEGWKA EKLK >gi|269838497|gb|ACXB01000014.1| GENE 2 639 - 1286 186 215 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|154175107|ref|YP_001408238.1| ribosomal protein L22 [Campylobacter curvus 525.92] # 1 212 1 198 199 76 31 1e-12 MQTLIDFVLHIDEHLVTIVNNFGNYSYLILFAIIFIETGAVILPFLPGDSLLFAATALSA KPEYGLNVWAFIILFSLAALLGDSLNFFLGKHVGMALRRHPFFGKFISDEKMDEAQQFFE KHGNISITLARFMPIIRTFAPFVAAGANMPYRSFIRYNIVGNFAWVAVCCGAGYFFGNIP FVKEHFSLVVIGIIVVSLIPAIISFIKSKSKKQVD >gi|269838497|gb|ACXB01000014.1| GENE 3 1313 - 1684 264 123 aa, chain - ## HITS:1 COG:no KEGG:PEPE_1226 NR:ns ## KEGG: PEPE_1226 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 121 87 207 208 101 43.0 1e-20 MAAVKNLFLLNSITLVLAIGGLLLIWHRIFREKQEWQMLRFFQIAIVVTPLIIFFLAVDF NRYFIIFHQVFFRDNYWIFDPKTDPIINVLTDRFFALSFALIGILFEMYMIFFYRIIKKQ VLT >gi|269838497|gb|ACXB01000014.1| GENE 4 1930 - 2703 885 257 aa, chain - ## HITS:1 COG:SP1407 KEGG:ns NR:ns ## COG: SP1407 COG0647 # Protein_GI_number: 15901261 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted sugar phosphatases of the HAD superfamily # Organism: Streptococcus pneumoniae TIGR4 # 5 256 3 252 257 271 53.0 1e-72 MIENYGGYMIDLDGTMYRGKEKIPAAKRFVERLQEKQIPFLFVTNNTTKTPEDVAKNLTE NHDIKVKPENVYSAALATADYLDGIADKDHRKVYIIGEIGLKRAILAKGFEMEEDHPDYV VAGLDYDVTYHKFEVATLAVKKGAKFIGTNADTNLPNERGLVPGAGSVIALLERSTQQRA FYIGKPETIIMEKALKVMGLPKDQVVMVGDNYMTDISAGINFGMDTLLVYTGVSTPELVA KQAVKPTHEINSFDEWQ >gi|269838497|gb|ACXB01000014.1| GENE 5 2703 - 3236 482 177 aa, chain - ## HITS:1 COG:lin2501 KEGG:ns NR:ns ## COG: lin2501 COG4470 # Protein_GI_number: 16801563 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 28 115 3 91 91 92 50.0 3e-19 MNKKTNEELAEMRRPVVNRVVQVNTDEVLINDHEYRLEKNYRDAFDEELMAERFVGLLSR YDFIVGDIGSGQLRLKGFFADEEKVPNELKISRFEDYLFEICSFGCPYFILRNMQVNERS KRRWIKEWHRAETKHKAKRPVSKKAKSRKPVAKRRNEVVGTGKKKRQKTFKIREKKK >gi|269838497|gb|ACXB01000014.1| GENE 6 3336 - 3944 478 202 aa, chain - ## HITS:1 COG:SMb20398 KEGG:ns NR:ns ## COG: SMb20398 COG4186 # Protein_GI_number: 16264132 # Func_class: R General function prediction only # Function: Predicted phosphoesterase or phosphohydrolase # Organism: Sinorhizobium meliloti # 1 165 1 146 164 69 32.0 3e-12 MNFFTADTHFFHKELLKDHDFAPRDFTNINAMHEAIIKNWNQRVTDRDVVYHLGDIALNF VRPEKKAHEEVYELLKRLNGRLVLIKGNHDSRSLFKYLSKHNYLVNGKPKFEFHSVGTII KMNHRQLIMSHYPIMLGIVQQVINLHGHIHHYSVNIKENINVGVDTPEKDYLDYRIPFGA PFSESDIEQMIDGKRIDFKKRR >gi|269838497|gb|ACXB01000014.1| GENE 7 4143 - 5147 843 334 aa, chain - ## HITS:1 COG:BS_ytxK KEGG:ns NR:ns ## COG: BS_ytxK COG0827 # Protein_GI_number: 16080000 # Func_class: L Replication, recombination and repair # Function: Adenine-specific DNA methylase # Organism: Bacillus subtilis # 1 331 1 327 329 227 36.0 2e-59 MDTEKIEKIYRVFKESAELLQKNLDVDFLDAFIETGDNLITGEIQVEDGKPDQATVQKLK QVYADFNWQEYEPEELRKAIQLVMIQANRVERIQANHQFTPEAIGMLFNYIIENLPLSQD QVSIFDPAVGTGNLLSTILNYFQDHQVKFNGTGIDNDDTMLAIASMSFIFEHLKVDLYHQ DSIDNLLVKNADIVVSDLPVGYYPIDERTVGFETRSSEGHSFVHHLLIEQSMKAVRPGGF GVYLVPSNLFQTEEAKKLLAFFHDKIYLQAILNLPSKMFKDAKAQKSILILQKVGQNAKQ ADQVLLGEFPDFKEQKEMVAFLKDFKKWAQKSLK >gi|269838497|gb|ACXB01000014.1| GENE 8 5164 - 5487 265 107 aa, chain - ## HITS:1 COG:no KEGG:PEPE_1232 NR:ns ## KEGG: PEPE_1232 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 10 107 7 104 104 107 62.0 1e-22 MRTRLFHQPKKKASAMITALFVLTFMAGINLFLNDQARQTILRLKNEQATTQVKILANQF LLRYREKEIKKLTNKKLGTVELNQDQNLTVKLKKGNTVKVRFNESGY >gi|269838497|gb|ACXB01000014.1| GENE 9 5447 - 5881 407 144 aa, chain - ## HITS:1 COG:no KEGG:PEPE_1233 NR:ns ## KEGG: PEPE_1233 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 142 1 143 144 136 53.0 2e-31 MNSGKNYKYGFTLAEAILALLIMVLIVNLTIMAVKATKHKAEADFEDKITEVVQDLESKR HDFRLKEVRPNRLILYSEVQKKRYELEYYSRKNMLRYTPGHMPLMPGVRAVSFKRVGNLV QIKMKVYGGNYSAYAFIPPAEKES >gi|269838497|gb|ACXB01000014.1| GENE 10 6028 - 6474 428 148 aa, chain - ## HITS:1 COG:no KEGG:PEPE_1235 NR:ns ## KEGG: PEPE_1235 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 30 146 1 117 119 133 52.0 2e-30 MLAVADVRKAGFTLLESIVVLLITCSTIGMGLVNFRGAHSEQQEKIFFKRFEMGWQEMER LAMYEGCQGSVIFIKDDHSVMFHWQHGRERHSKYLDLPPNLEPYTDRTIRIGRDGIVTPT TVILQENGQNKYRLAAQLGWGVYEITRV >gi|269838497|gb|ACXB01000014.1| GENE 11 6458 - 6766 288 102 aa, chain - ## HITS:1 COG:BH2827 KEGG:ns NR:ns ## COG: BH2827 COG4537 # Protein_GI_number: 15615390 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Competence protein ComGC # Organism: Bacillus halodurans # 6 78 8 80 102 62 42.0 2e-10 MKNRIKKAFTLIEMTVVLFIISLLILIILPNVTSQKHNARNIQGDALTEVVQTQVDLYEN EYNHLPESLDDLKEKGYLSDKQMDQVNRDGIKVDSSGHVSRS >gi|269838497|gb|ACXB01000014.1| GENE 12 6766 - 7797 680 343 aa, chain - ## HITS:1 COG:L0314 KEGG:ns NR:ns ## COG: L0314 COG1459 # Protein_GI_number: 15674104 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, component PulF # Organism: Lactococcus lactis # 16 339 31 353 357 118 26.0 2e-26 MAKLPTKYIRTTSTGKIPLADQAFIFSTMVDLLKMGISLRKSVDFIRIMRPSIAKPMQNV IEQLQRGQSFSAAFQPYVSTNIYYQLAIADQHGGLVRTLNTIAQIFTSQERQRKKLRSVI QYPLFLLLFLGLMMVGMRIYIMPELADWNRGTKSWDSQLIKAGWAAVFLVALAALGYYFW KFKRSSITNQVNLLCRLPIIGPLYQNYCHYYLLANLSFLIANGMSVGSICKYLNQLDSKS LLHQIGRKVEHSIANGRQVDQIIQKAVYLPTELSLLIQKGSQKDALATEIYALSMMKYKS LISRIERLILVVQPILFGIIGIVIVIMYWNLLMPMYNSIKEVS >gi|269838497|gb|ACXB01000014.1| GENE 13 7751 - 8713 680 320 aa, chain - ## HITS:1 COG:SP2053 KEGG:ns NR:ns ## COG: SP2053 COG2804 # Protein_GI_number: 15901873 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB # Organism: Streptococcus pneumoniae TIGR4 # 21 311 20 302 313 198 39.0 1e-50 MDITNQLSRIMQESIVHHDSDLFIMPRNDKYQVLYRNVQGYRKSTHIEQREAEQIMSYIK YRADMSISERRRPQSGAMTWLAADGQVVNLRISTVGDFLDRPSMVVRFIYELKQQREILD PVSLQDIEAAARLRGMIVFSGPTGSGKTTLIYEIAKKLSGSKLVMSIEDPVEIQENNFLQ LQVNEKSGMTYQALLKSGLRNRPDIFIIGEIRDSKTAEIAVQAALSGHLVLTTLHCKSSE GVWDRLLELGVQEDYLKEALTATIYQRIIPIKNGSIRILAEMKSFHPLLKTKSPRWQTKL EEWKNSGQITNEVYQDYQYG >gi|269838497|gb|ACXB01000014.1| GENE 14 9010 - 9921 1157 303 aa, chain - ## HITS:1 COG:SA0258 KEGG:ns NR:ns ## COG: SA0258 COG0524 # Protein_GI_number: 15925971 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Staphylococcus aureus N315 # 1 301 1 301 304 253 50.0 2e-67 MTNKVVVLGSLNVDRILQMDRVPEPGETLALNNQDMAGGGKGANQAIAAARSGAQTSFIG RVGADENGKFMLQQLVNSGVTTDLVAVDEDAGTGQAFVMVEKSGENRILIYGGANAQLSA TDVKKAQTQIAAADLMVAQLETPVETTQFVFQMAKELGVKTILNPAPAVAKLPAELLKNT DVITPNETEVEILTGIAVTDEAAMLKAAQRLHDLGVATVIITLGSKGVFYDDGVQHGIVP AFKVRAVDTTAAGDTFLGALSSELNPDLSNLKTAIEYGNKASSLAVQKMGAQPSIPTRKD ILK >gi|269838497|gb|ACXB01000014.1| GENE 15 10065 - 10802 975 245 aa, chain - ## HITS:1 COG:lin1570 KEGG:ns NR:ns ## COG: lin1570 COG0217 # Protein_GI_number: 16800638 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 238 1 238 241 283 61.0 2e-76 MSGHSKWHNIQGRKNAQDAKRGKIFQRISREIYVAVKAGGPDPSANPQLRLMMDKARAAN MPKDNIKRAIDKGSGTGGANYEEITYEGYGPAGTAIIVSALTDNKNRTAAAVRSAFTHHG GSLGATGSVSYMFDRKGYIVIKREGLDKDEDQMMEDAIEAGADDVQTSDEVFEIYTDPKE FAAVRDALEAKGYDLANAELTMIPETETQVPADKVKQYTGLIDELENNDDVSEVYEAAVL PDDAE >gi|269838497|gb|ACXB01000014.1| GENE 16 11019 - 12452 1451 477 aa, chain - ## HITS:1 COG:yacK KEGG:ns NR:ns ## COG: yacK COG2132 # Protein_GI_number: 16128116 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Putative multicopper oxidases # Organism: Escherichia coli K12 # 27 454 29 511 516 261 35.0 2e-69 MITKYLYDENAYDYHDGGYRPLKKAPGEEHPLNVPAFLKPDRIEGNEIYYTVTAQAGETK ILPGKPTHTWGYNGSILGPAIQFETGKTYHVTLKNELDEVTTFHWHGLNIVGPYEDGGPH APVYPHGERKITFTVDQPAANIWLHPHPCPETARQVWNGLAAPVIITDGHEQSLKLPRRW GVNDFPVVLQDRSYHDNQLDYKADYDVDGTLGDYALVNGTVNPVVNVTKPIVRLRFLNGS NRREWRLHFADYHPFTQIGSDGGLLPEAVEMDRIMLTCAERADVLVNFSDYQPGQEVILQ TDDFNLIKFKIGDIKKENMLLPSPLAEIPALSVDENTPVFKTVMSGMDDQVRLDGKLFDM QRIDTRQQVDQTQIWEVSNTNDMEGGMIHPFHIHGCQFQLIDRNGHAVNPNEHGWKDTIG VNPNETVRIKVKFTKLGIFMYHCHILEHEDTGMMAQIEIFDPDHPIEYHLMPMNHKM >gi|269838497|gb|ACXB01000014.1| GENE 17 12449 - 12622 170 57 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIKSKIGSVFFVLLYVYLFYLVATNQMMPAMYVMAGGMLLESVICLIHNFKMGGKSK >gi|269838497|gb|ACXB01000014.1| GENE 18 12865 - 13422 757 185 aa, chain - ## HITS:1 COG:SPy1821 KEGG:ns NR:ns ## COG: SPy1821 COG0231 # Protein_GI_number: 15675650 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) # Organism: Streptococcus pyogenes M1 GAS # 1 185 1 185 185 246 69.0 1e-65 MVEAINLKAGMTFIKDGKLIKVLETNHHKPGKGNTVMQMKLYDVRSGATVQTTMRPTEKV EQAIVDTKEAQYLYRQDDTAIFMDTETYEQYELPISSIEQEMKYLLENTEVKINFYGDEV IGITLPTTVELKVVETSPSIKGATVTGSGKPATMETGLVVNVPDFVQEGETLIINTEKGT YTKRA >gi|269838497|gb|ACXB01000014.1| GENE 19 13499 - 13573 87 24 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLRMIFRVKLICALRDLLFISILA >gi|269838497|gb|ACXB01000014.1| GENE 20 13710 - 14264 610 184 aa, chain - ## HITS:1 COG:BS_yueJ KEGG:ns NR:ns ## COG: BS_yueJ COG1335 # Protein_GI_number: 16080227 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Amidases related to nicotinamidase # Organism: Bacillus subtilis # 5 183 3 181 183 202 51.0 2e-52 MGANEALLIIDYTNDFVATNGALTTGKVGQAIEPALIKAANRELREGGWVMLPTDLHVEK DPYHPETKLFDAHNLEGSWGRELYGQLKDWYELNQDNPRVRQFAKTRYSSFAGTDLDIRL RERHVDTLRLAGVCTDICVLHTAVDAYDLGYQLIIDPTTVATFTEHGQEWALSHFKNALG ATIE >gi|269838497|gb|ACXB01000014.1| GENE 21 14297 - 15598 1238 433 aa, chain - ## HITS:1 COG:SPy0036 KEGG:ns NR:ns ## COG: SPy0036 COG0015 # Protein_GI_number: 15674278 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate lyase # Organism: Streptococcus pyogenes M1 GAS # 1 430 1 430 430 522 60.0 1e-148 MIDRYTRPEMQKIWNRQAQFDSWLEVEIAVVKAWNKVGKVPDEDLALIEKNARFDIDRID EIESQTHHDVIAFTRAVSESLGEERKWIHYGLTSTDVVDTAQSLRIKAANKIIAADLEKL QATLKEMATKYKDLITVGRTHGIHAEPTTIGLKFLRWYSEINRNIERFKQARQHIEVGKI SGAVGTFANITPQIEEWVCEMLGIRHQEISTQILPRDLHAEYLSVLALIASQIEEMATEI RHLQRTEVNEMREGFAKGQKGSSAMPHKRNPIGSENVSGLSRVVRGEMVTAFENMNLWHE RDISHSSAERVILPDATSLVDYVLNRMNRILNNLVINEDEIKKDLEMTHGLIFSQQVMLK LIDKGWTREEAYDTVQPIAMEVWNTGQHFMDLLLKDSKIKTTLSDEEVKSIFNYRYHLKN VDAIYQRCGINVE >gi|269838497|gb|ACXB01000014.1| GENE 22 15781 - 17073 1356 430 aa, chain + ## HITS:1 COG:SPy0160 KEGG:ns NR:ns ## COG: SPy0160 COG0104 # Protein_GI_number: 15674367 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate synthase # Organism: Streptococcus pyogenes M1 GAS # 1 429 1 427 430 521 57.0 1e-147 MTATVVIGSQWGDEGKGKIIDFLGQNADVTVRYSGGDNAGHSLVVNDQKLALRLIPSGIL APNSICIIGNGTVVNPHTLLDEIKELNQAGVNTDHLRISDRAHIIFPYHILQDQQQERDR SKNGEKIGTTNKGIGPAYMDKMQRIGIRAVDLLDAEGLKEKIAFNLAQKQRVLDDDLWEQ LPSVDELTKQYAEYGQILKDYITDTSYLINTKLHEQKRVLFEGAQGTMLDIDHGTYPFVT SSNPTAGGAATGSGIGVTKIKHVIGVCKAYVSRVGEGPFPTEQINEIGDRIREVAHEYGT VTHRPRRIGWFDGVLMKYVADVNGLTDLVVNCLDVLSGFDEVKICTGYQTDHGVINYYPA SEKELENLTPIYETLPGWQEDLTQMQSYDELPANAKNYLKKIEEITGVQVSAFSIGPDRE QTVVVNDMWD >gi|269838497|gb|ACXB01000014.1| GENE 23 17162 - 17956 689 264 aa, chain - ## HITS:1 COG:BS_yvaG KEGG:ns NR:ns ## COG: BS_yvaG COG1028 # Protein_GI_number: 16080412 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Bacillus subtilis # 1 264 1 264 264 283 54.0 3e-76 MELHLDGKLALITGSTKGIGKAIAMEMAREGTNVIINGRRAADVQKVVDEIKTQFPKTHP QGAPFDITDDKSRQVLFEKFPEVDILVNNMGIFGTMEYWDIDDETWERYFRTNVLAGNAL AKFYMLHMLKQDFGRVIFIASEEAVMPSGEMPQYSMTKTMNLSLAKSLSNLTVGTHVTVN TVMPGSTLTEGVQKMLTEMYQDSGIPEEQWEADFMKNHRSRSQIQRLIRPAEIGRFVTFV ASPDSSSFSGEALRIDGGLVPTIF >gi|269838497|gb|ACXB01000014.1| GENE 24 17979 - 18818 835 279 aa, chain - ## HITS:1 COG:L132617 KEGG:ns NR:ns ## COG: L132617 COG0656 # Protein_GI_number: 15672315 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Lactococcus lactis # 9 279 1 272 272 324 63.0 1e-88 MIKSLDDRVTLNNGTTMPGLGMGVFQIPNEQTAQVVTEGIKAGYRLIDTAQVYGNEAGTG AGIKAGLAATGLKREDLFITSKVWNDHLSYDETLRAFQDSLAKLDLDYLDLYLIHWPGQD AFRDSWKALEKLYHDGKIKAIGVSNFQISHLKELAEFAEVMPVVNQVETHPKLSQTELIE FATVHNLKIQAWSPLMQGKILDNPVLSEIAQNHQKSVAQIILRWDIQRDVLLVVKSVKLA RIKSNAEVFDFELTAAEMAKINELNENLRVGPDPDTFNF >gi|269838497|gb|ACXB01000014.1| GENE 25 18946 - 19314 226 122 aa, chain + ## HITS:1 COG:L133547 KEGG:ns NR:ns ## COG: L133547 COG1733 # Protein_GI_number: 15672316 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Lactococcus lactis # 3 114 2 113 115 172 76.0 2e-43 MEKKIYNIGVEATMDVIGGKWKPIILCNLRHGKQRPSELRRQISGISQKMLTQELRELER DHIVNRKTYNVIPPKVEYSLSDYGQTLSTLLDQLCSWGEMHVQTLQKNGVAVELNCADTL AE >gi|269838497|gb|ACXB01000014.1| GENE 26 19423 - 20163 762 246 aa, chain - ## HITS:1 COG:no KEGG:PEPE_1248 NR:ns ## KEGG: PEPE_1248 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 241 1 241 247 211 50.0 2e-53 MILFGLFFFGAVSAKQTVFNANYVQQQIEKSSAAEVINQQLDTQLQQAGINQSNLIPDDL VNDELKTMVQQFYDGQQVHIDENIITNAINQSTQATGAFQQTVNAMVVSKVVAVFNSQLD TQKLSRYAGQVQKLSRIDQTVIWVSGVGLVLTLAYALLRKRLLSTISSTLLVVGGFVAII CGIGYVSNVLSNLPIQYPVVKQIVQTAGQDLLVREFTIALGLFLVGVVLAVFGKGFTTIR KGLKRR >gi|269838497|gb|ACXB01000014.1| GENE 27 20518 - 21249 994 243 aa, chain + ## HITS:1 COG:CAC0770 KEGG:ns NR:ns ## COG: CAC0770 COG0580 # Protein_GI_number: 15894057 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) # Organism: Clostridium acetobutylicum # 1 242 1 242 242 269 59.0 4e-72 MEYSFFAKLAAEFLGTAILVILGNGSVANVELKGTKGNGSDWLVIAVGYGCGVMVPALMF GTVSGAQINPAFTIGLAVSGMFSWSQVIPFIIAQMLGAIIGQLVVYWAYLPHYDQTTDPE SILGTFGTIDASDSLWNGFVNEFVGSFILFFGATAFTHAPYFKENMSSVFIALGFLVGTL VASLGGATGPALNPARDLGPRLVHAILPIKHKGSSQWNYAPIPVIAPILAGICAVALYKG IFL >gi|269838497|gb|ACXB01000014.1| GENE 28 21508 - 22509 1238 333 aa, chain - ## HITS:1 COG:SP1999 KEGG:ns NR:ns ## COG: SP1999 COG1609 # Protein_GI_number: 15901822 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 2 333 3 333 336 350 56.0 2e-96 MSKQTITIYDVAREAGVSMATVSRVVNGNPNVKPDTRKKVNEVIERLDYHPNAVARGLAS KKSTTIGVILPDITEMFFAALARGIDDIASMYKYNIILENSDEDVDKKVEVLENLLAKQV DGVIYMGNAIDDRLREALKSARTPVVFAGSVDDKHALPSVSIDNEAAVYESVRKLIENKN KKVAFVSGPLSQPVNGKFRIEGYKRALAESNIDFDESLVFETTNTYEDGIKLASQIASSD ITAAFVANDRLAVGLLNGLQDLNVKVPEEFEIMTSNNTNLTKMVRPQISSIGHPMYDTGA VAMRLLTKLMNKEEVEERNITLPFDMVFRQSTK >gi|269838497|gb|ACXB01000014.1| GENE 29 22673 - 23767 1054 364 aa, chain + ## HITS:1 COG:SP1591 KEGG:ns NR:ns ## COG: SP1591 COG0006 # Protein_GI_number: 15901433 # Func_class: E Amino acid transport and metabolism # Function: Xaa-Pro aminopeptidase # Organism: Streptococcus pneumoniae TIGR4 # 1 364 1 359 360 379 52.0 1e-105 MSQLEKVQKWVADHRLDVAYISNFESIKYLTGFGSDPIERVLALFVFPDQDPFLFAPALE VEAIKDTGWKFPVYGYLDHEQPFHLIANYIRERNANPVHWGIEEDNLTVDRYEVLRSEFP NAKFEANLTPVFEKLRMVKTADEIEKLKAAGAEADFAFQVGFDAVAAGKTEAEVAAELEY ALKKRGVMEMSFDTLIQAGAHAAEPHGATAMNKIENNELILFDLGTVHDGYISDASRTVA LGQLSDKQADIYKVCLEAQLTAQDYAKPGITAASLDKVARDIIDKAGYGEYFIHRLGHGM GMGEHEFPSIMEGNDLVLEEGMCFSIEPGIYIPGFAGVRIEDCVHITKDGCEPFTHTSKE LKYL >gi|269838497|gb|ACXB01000014.1| GENE 30 23866 - 24216 549 116 aa, chain - ## HITS:1 COG:no KEGG:PEPE_1253 NR:ns ## KEGG: PEPE_1253 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 116 1 116 116 130 72.0 2e-29 MSKSSFLLGVIVGGAAATAAAIKLTDTTPTELKEAAMKKVDGFMEANDFDMASLKEQAAA SVDELKQRGMDLANRANEKFNGDDEIAEEEDVILDKMATAPYEKPTEVFMPHKLED >gi|269838497|gb|ACXB01000014.1| GENE 31 24221 - 24640 529 139 aa, chain - ## HITS:1 COG:L6768 KEGG:ns NR:ns ## COG: L6768 COG4768 # Protein_GI_number: 15672602 # Func_class: R General function prediction only # Function: Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain # Organism: Lactococcus lactis # 4 136 2 133 139 90 47.0 5e-19 MTGGGIAAIIAAIALLILVLFIGLVLVNASKTLAEINRSLAIITRDVDLISHEAEGIMAN ANELLEDVNGKVATIDPLFQAVADLSESTSDLNQATRRLAGKVNHTAKTKKTGKVATAMN VGKGAVNLYKNRQKNKQEG >gi|269838497|gb|ACXB01000014.1| GENE 32 24764 - 25609 655 281 aa, chain + ## HITS:1 COG:SPy1897 KEGG:ns NR:ns ## COG: SPy1897 COG0668 # Protein_GI_number: 15675710 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Small-conductance mechanosensitive channel # Organism: Streptococcus pyogenes M1 GAS # 26 195 16 186 281 149 45.0 7e-36 MPQTLLIGAAFQPLQRELSRIDWSQIGANFLKHFLQIILISIIFWVINRIGKHLINKSFG PYQAPEKQSARSQTIFVVVRNIFKYSVMFFYVYTILSNLGVPVGTLVAGAGILSVAIGLG TQGLVSDVINGLTILIEGQLRVGDSVTIQSIDGTVVSIGLRTIELRALDGTLHYLPNRSI TTISNHSQENQNITIFLRIKDPFRIDEAKDLLQDQLPKAKHHTTKLKAGIVIQAPVAEKS HGYLGVQISTKVAPGYQAAMQTMILDRTLKILREAQIEVEN >gi|269838497|gb|ACXB01000014.1| GENE 33 25760 - 26353 353 197 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|71274727|ref|ZP_00651015.1| Ham1-like protein [Xylella fastidiosa Dixon] # 1 189 1 191 200 140 43 6e-32 MSNQILIATKNEGKLKEFKQIFTAKGIEVLSLKDVDEDVDVQENGLTFEENARLKADSYA KTIGIPVLADDSGLEIDALNGRPGIFSARYAGDHNDAANNAKVLTELGGVPDEKRTATFH TTVVVRKPDGTELVANGNLRGRILSVPRGDNGFGYDPLFYVEEKQKTLAQMTREEKNQIS HRALAIQDLLTKFDKFW >gi|269838497|gb|ACXB01000014.1| GENE 34 26363 - 27160 499 265 aa, chain - ## HITS:1 COG:L0120 KEGG:ns NR:ns ## COG: L0120 COG0796 # Protein_GI_number: 15673264 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glutamate racemase # Organism: Lactococcus lactis # 1 253 1 252 271 228 44.0 1e-59 MDNRPIGFMDSGVGGLTVVKAAKELMPNEAVVFIGDEARVPYGPRPTAEVIKFSQQMADF LVKKDVKALVIACNTATNAAFQILSTTLPIPVIGVIQPGAQAAVATTRNNRIGVIATEGT IKSQAYSTALAALAPQTEVFPVACQSFVELAEHNQLTTPEALQVIDQQLVGLKNQGIDTL VLGCTHFPLLAKGIQTAVGDRVKLVDPGVAAVQQLKDVLERQGLLREATSTPDEQYFATA NIASFRTIAQSFLAPDIQVNLAKID >gi|269838497|gb|ACXB01000014.1| GENE 35 27410 - 29809 2213 799 aa, chain - ## HITS:1 COG:PAE2423 KEGG:ns NR:ns ## COG: PAE2423 COG0574 # Protein_GI_number: 18313335 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate synthase/pyruvate phosphate dikinase # Organism: Pyrobaculum aerophilum # 9 785 4 781 811 698 46.0 0 MSSRENANVLWFDELHREDVNLVGGKSSSLGEMTSAMDVPVPYGFATTARAYRYFMEQTG LNDQVNELLESIQDYENSEELHSVCEQIRNLIVNATMPADLAKDIEQAYADLAKKVDQDA PFVAIRSSATAEDLPNASFAGQQETYLNIKGGADVVNRVQLCYSSLFTDRATYYRHKQHF PHEKVALSAAVQMMVFSKASGIMFSVNVADGDDSKIVIDAIYGLGEYVVLGKVTPDHFVI DKETMKIVEKNIIKQPIQLVRVADGGTVEEKVPEELQGQPVLSDSQVIELAGYAKAIEEH YGCYMDMEFALDANTDRLWIVQARPETVWSQRKAADHADEEDVDVVKEADAEVAVRGLPA SPGLASGVVHVIDNPKDIDQFKQGEVLVTVMTSPDWVPAMKKATAIITNDGGMTCHAAIV SREMQIPCIVGTKSKNLAATDALKTGDVVTIDAKNGVVYHGKVASMLKKAASAQQEGNQM VAAETFAPTATRVMMNLGDPELVEKYSSLPADGIGLMREEFLWTTYIHEHPLYLIEQGHP EKVVNMLAEGIAKVTRTMAPRPVVLRLSDFKSSEYRKLKGGDKYEPHEPADLLGWRGASR YYDPKYVDAFKLELAAIKKVRNEFGLKNLNVMIPFVRTVDEAQKVTEIMQNEGLVRSADF KVYMMAEIPSNIILADQFNQFIDGYSIGSNDLAMLILGCDRNNDTVARLFDERNLAVKRA IHHLIEAAHKDGKTVSICGQAPSEFPEFTNFLIQSGIDYVSVNPDMVKETKRNVAHFEQR IMLDKATGRGIQDPTDYDW >gi|269838497|gb|ACXB01000014.1| GENE 36 30300 - 30611 388 103 aa, chain - ## HITS:1 COG:lin1196 KEGG:ns NR:ns ## COG: lin1196 COG0526 # Protein_GI_number: 16800265 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Listeria innocua # 1 103 1 103 103 139 59.0 1e-33 MVEAITDANFEEKTGTGVTLTDFWATWCGPCRMQSPVVEQLADEMGDQVNFTKMDVDQNP ETARKFGIMSIPTLMVKKDGAVVDTIVGYHSKEQLAKILNQYL >gi|269838497|gb|ACXB01000014.1| GENE 37 30710 - 33067 2247 785 aa, chain - ## HITS:1 COG:lin1195 KEGG:ns NR:ns ## COG: lin1195 COG1193 # Protein_GI_number: 16800264 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Listeria innocua # 1 785 1 785 785 646 48.0 0 MNSKILEVLEYEKVKNAVKQFIATENGAKELRQLVPMTDSAKVQNALKETLDAVNIYRVK SGIPIPRLEDIDEPLQRLKIDATLNGREIAQIGRVLRATREVINFFADLPDTEVTVETLN GVVDQLETIPEIEERLNSSIEGNGHLLNSASSELRRIRAAITRVEGEIRQRMEKFTRGSQ AKYLSEPIVTIRSERYVIPVRADSRSRFGGVVHDQSSSGQTLYVEPEAVVDLNNQLRQEQ VAEVHEEQRILQELSALIAPYADTLKDNSKVLGHLDLLNAKAQYAHKLKATEPQISTNNR INLRQARHPLIDPKKVVPNDIRLGGEYSTLVITGPNTGGKTITLKTVGLLQLMAQSGIFI PANENSTVRVFEEIFADIGDEQSIEQNLSTFSSHMDNTIHILEHLNERSLALFDELGAGT DPKEGAALAIAILDRVRQRGAVSITTTHYPELKTYGYERSGTINASMEFDVDTLQPTYKL LLGIPGQSNAFEISRRLGLDEDIITQARGLVDQDSQDLNNMIKDLTTRQKRAQKLNEQVQ TLLSQTEEYNDTLVKGVERLSQQRDRLLESAKESANQIVNDSRSEADQIIKRLRRLEKSA GNFKENDLIEAKSKLNALHQDTNLKRNKVLRKAKEAQKLHVNDEVIVLTYGQRGELLRQV DAHHWEVQMGILKMKVATDELEKVKPERTTKPASHNVVHRTKSAGVKTSLDLRGKRYEEA LTETDRYIDAALLAGYDEVTIIHGKGTGALRSGITKYLKQNRRIKSFEYAPANAGGNGAT IVHLR >gi|269838497|gb|ACXB01000014.1| GENE 38 33164 - 33445 499 93 aa, chain - ## HITS:1 COG:BS_yrzB KEGG:ns NR:ns ## COG: BS_yrzB COG3906 # Protein_GI_number: 16079792 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 93 1 91 93 79 58.0 2e-15 MDNEEQKITLVDEHGNEELYNVLFTFDSEDYGRSYVLLYPAEAENDEEVDIQAYAFEPDE NHDLGEGELIPIESDEEWDMVEEVLNTFLGDQD >gi|269838497|gb|ACXB01000014.1| GENE 39 33455 - 33895 509 146 aa, chain - ## HITS:1 COG:SPy2113 KEGG:ns NR:ns ## COG: SPy2113 COG0816 # Protein_GI_number: 15675863 # Func_class: L Replication, recombination and repair # Function: Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) # Organism: Streptococcus pyogenes M1 GAS # 1 136 1 136 139 195 70.0 3e-50 MRLMGMDVGSRTVGIAVSDQLGWTAQGVEIIPINEDEGEFGISRVKELVSQYEVAGFVIG LPKNMNNTEGPRVEAARNYGKLLTETFGLPIDFQDERLTTVEAERMLIEQADTSRSKRKK VIDKLAASLILENYLNGHGKLIDKLK >gi|269838497|gb|ACXB01000014.1| GENE 40 33895 - 34176 347 93 aa, chain - ## HITS:1 COG:lin1538 KEGG:ns NR:ns ## COG: lin1538 COG4472 # Protein_GI_number: 16800606 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 89 1 90 90 102 61.0 2e-22 MGKLDETMFFDFGDNKPNDVRGTLKTVYDALEEKGYNPIDQIVGYLISGDPAYIPRLNDA RNLIRKHQRDEIIEELVRYYLADQVAGGKKDKN >gi|269838497|gb|ACXB01000014.1| GENE 41 34390 - 34566 77 58 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLFKDEKVLKKLFWWFDFNRAKNQFIPLNQKLTMMPNLGIMVNFCSQTTRLLSHSQFF >gi|269838497|gb|ACXB01000014.1| GENE 42 34556 - 34666 70 36 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKSIFLFFPLSTLLVMLQILLLVGFKIIYLGSLAIR >gi|269838497|gb|ACXB01000014.1| GENE 43 34635 - 37280 2824 881 aa, chain - ## HITS:1 COG:lin1539 KEGG:ns NR:ns ## COG: lin1539 COG0013 # Protein_GI_number: 16800607 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Alanyl-tRNA synthetase # Organism: Listeria innocua # 1 879 1 877 879 1025 59.0 0 MERKSSSEIRRMYLDFFKSKGHVVEPSASLIPKDDPTLLWVNSGVATMKKYFDGSVVPEV PRLTSSQKSIRTNDIENVGHTARHHTLFEMLGNFSVGDYFKEEAIHWAWELLTSKEWFDM DPEKLYVTVYPKDEEAKKIWLETGVDPSHIVEAEDNFWDIGEGPSGPDSEIFYDRGEEFN NLADDDPENYPGGENERWLEIWNIVFSQFNHKPDGTYEPLPHKNIDTGMGLERVVSVFQD APTNFETDLFLPIIHEVEKLSGKKYGVDKNDDVSFKVIADHARAITFAIGDGAIPSNEGR GYVIRRLLRRAVMHGKKLNINKPFLYQMVPVVGKIMEDYYPEVLADKDYIEKVIKSEEDR FNETLTDGLELLNSIIADTKADHSKVISGKDAFRLFDTYGFPLELAKEYAEDQGMEIDEA GFADEMQKQKERARSARSNAKSMGVQSDLLTDLKTPSEYVGYDTLKVDAAVLKDIIQDDQ LTDTVNPGEARVLFDVTPFYAEMGGQVADQGVIEDADGNVVAEVVDVQHAPNGQNLHTIK AKREMHAGESFTLIVDRAFHLKVEKNHTATHLLDQALRDVLGEHTHQAGSLVEPGYLRFD FTHFGQVTDEDLQKVEEIINDKIYDEIPVTTVETDLETGKKMGAIALFDDKYGKKVRVVS VGDYSREFCGGTHVKNTNEIGLFKIVSESGVGAGVRRIEAVTSQAALEFLNGEEALLQKA AGLLKSAQVKDVPAKVEQLQAQVKDLNQTINQLEAKIAQAEVANIYDQVQEINGIRLITA EVQVSGMDQLRQMADDWKTKDQSDVLVLGAKIGEKANLIAAVKDPFVKEGLKAGDLIKAI APKVNGGGGGRPNMAQAGGSAPEKINEALKAASEWLETQGK >gi|269838497|gb|ACXB01000014.1| GENE 44 37552 - 38913 1114 453 aa, chain - ## HITS:1 COG:SPy1659 KEGG:ns NR:ns ## COG: SPy1659 COG0513 # Protein_GI_number: 15675529 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Streptococcus pyogenes M1 GAS # 4 447 3 446 447 484 57.0 1e-136 MNEFQKFNLKPFLMQALDQIGFVKPTPVQERVIPLIAEGQSVVGQSQTGSGKTHAFLLPI FNQIDPAKNAIQAVITTPSRELAYQIYEAAKQLAAASETPIEIGNYVGGTDKKRQIAKLE HHQPAIVIGTPGRVLDLLQARALNFRQVRYLVIDEADMTLDMGFLSAVDQIAASMPENLQ MLVFSATIPQQLNVFLQKYMEHPAIEEIPVATTISPTIKNILISTKSQDKNNLIYQLLTM GEPYLALVFTNTKERADELTNYLKSQGLPVAKIHGGIPPRERKRIMKDIHRLRYQYVVAT DLAARGIDIEGVSLVINDDIPTDLEFFIHRVGRTGRNGLPGTAITLYMPNEEAEVAEVEK MGVKFIPQQLRNHELVDTYDRQRRQTRRLSQKKLDPTLVGLVKKKKKKVKPGYKRRIKKA ISEKAIRDRRMEQHQAVREAKKAKMRQSRSKRR >gi|269838497|gb|ACXB01000014.1| GENE 45 39170 - 40105 765 311 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149007035|ref|ZP_01830704.1| 50S ribosomal protein L31 type B [Streptococcus pneumoniae SP18-BS74] # 1 311 1 309 311 299 48 1e-79 MDTQEKILAQIKKYNRIVIHRHQRPDPDAIGSQVGLAKILQASFPHKQIKVVGKQIDGLS WLGQMDDVDNDFFDDALVIVIDTANAPRIDDRRFDQGAYLIKIDHHPNDEPFGDLMWVKE AASSSSELVYDFYNQFKSELVLPQDAASDLYAGIVGDTGRFMYSATSAHTHEVVAGLMAT GFDMVKVNQILDEIPVSVAHLSAYLYDHLTISERGAAHLVLTKEILEKFDLKDAGTAGIV PLPGHIAQVQCWAIFVEQDDHSFRVRLRSKGPVINELAKRHHGGGHPLASGAKAADRDEV TQIVKELEELV >gi|269838497|gb|ACXB01000014.1| GENE 46 40186 - 41310 1025 374 aa, chain - ## HITS:1 COG:SPy1846 KEGG:ns NR:ns ## COG: SPy1846 COG0389 # Protein_GI_number: 15675671 # Func_class: L Replication, recombination and repair # Function: Nucleotidyltransferase/DNA polymerase involved in DNA repair # Organism: Streptococcus pyogenes M1 GAS # 8 369 5 364 364 372 50.0 1e-103 MANQVSTPLIIDDSRKIIHVDMDAFYASIEMRDHPEFRTKPLVVARDPRKTGGHGVVATA NYVARQSGVHSAMPAAKALELCPQAVFKTPDFEKYRAVSDQIHHVFHEFTDKIETVALDE AYLDVTDDKKGMQDAVLIAHEIQKRIFNHTQLTCSTGISYNKFLAKMASEYAKPVGVAII EKDDVGAFLKEMPIEQFRGVGKKTIPKMHELGVFKGADLLKLSENDLIHHFGKFGYTLYR RVRGQDDRPVAYQRERKSIGKEETYGKPLVTENEVDQRLHLIAKKLAQAVTKRQKHGKTL VLKLRYSDFETLTKRITRPEFLPTDSETYYFYAKQIFDEIADFSRGIRLLGITITNLSDQ SFQEVSLPLFKHED >gi|269838497|gb|ACXB01000014.1| GENE 47 41332 - 42819 1358 495 aa, chain - ## HITS:1 COG:L0044 KEGG:ns NR:ns ## COG: L0044 COG0364 # Protein_GI_number: 15674202 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose-6-phosphate 1-dehydrogenase # Organism: Lactococcus lactis # 2 493 4 491 503 552 53.0 1e-157 MEQKALFIIFGGTGDLAYRKLYPALFNLYEKGYLKENFAVIGTARRPWSNDHYHEVVMSA IEDSGRDAGRTNSELPRKFASHFYYQSHNVDDAEHYVALRNLADQLDEKYQLNGNRIFYL AMAPRFFGTIAGHLKDQKLLTEGSGFNRLIIEKPFGRDYQSAKELNDSISGSFDEEQIFR IDHYLGKEPIQSIAGLRFGNALFNSLWNKEHIDNIQITLAESLGVEERAGYYETAGAMRD MLQNHIMQIVSLLTMERPEVFDSKHLQDKKIEALENIQTYSKEEAAQNFVRGQYGEDAAH TQLAYREEEGTADDSSIETFVAGKLITHNPSLDGVPIYVRTGKRLAKKSTQINVVFKNDD QNIFNSDPNQKLETNVLTLHIEPDQGFTLQFNTKKGNQGYQLSPVHLRYRKSASEKAKTP DAYESLIRDALMGNKTNFAHWHEVRKAWQIVDVIRQVWDAETPDFPNYASGSMGPQAADD LLDRDGRQWIFNPQK >gi|269838497|gb|ACXB01000014.1| GENE 48 43050 - 43433 505 127 aa, chain - ## HITS:1 COG:lin1564 KEGG:ns NR:ns ## COG: lin1564 COG1862 # Protein_GI_number: 16800632 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YajC # Organism: Listeria innocua # 9 119 2 110 110 81 41.0 4e-16 MLLAAANGGFGMSTIVFFILIFGLMYFMMIRPQRKQQQKRQEMMNQLNVGDEVVTIGRLH GVVDSIDNEAKTVTLDCDGIYLVFDRMAIMRVEKKQNVAPASTTEPTNADTTDTTDDEKS DSTTEEK >gi|269838497|gb|ACXB01000014.1| GENE 49 43498 - 44640 886 380 aa, chain - ## HITS:1 COG:SPy0203 KEGG:ns NR:ns ## COG: SPy0203 COG0343 # Protein_GI_number: 15674403 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Queuine/archaeosine tRNA-ribosyltransferase # Organism: Streptococcus pyogenes M1 GAS # 5 380 6 380 380 646 77.0 0 MEPAIKYRLIKKDKHTGARLGEIITPHGTFPTPIFMPVGTQATVKAMSPEELEDLGADII LSNTYHLWVRPGEDIVKEAGGLHQFMNWHKGILTDSGGFQVFSLAKLRDITEEGVHFRNE INGAKMFLSPEKAIQIENDLGPDIMMSLDECPPFFESYDYVKHSVARTSRWAERGLKAHR NPGTQGLFGIIQGAGFEDLRRQSAHDLVSMDFPGYSIGGLSVGESKAEMNRVLEFTTPLI PENKPRYLMGVGSPDALIDGVIRGVDMFDCVLPTRIARNGTCMTSHGRLVVKNAKYARDF TPIDDQCHCYTCRNFTRAYVRHLLKTDETFGLRLTSIHNVYFLVHLMKDVRQAIMDDNLL EFRQNFFDEYGYGKENSKNF >gi|269838497|gb|ACXB01000014.1| GENE 50 44660 - 45694 1086 344 aa, chain - ## HITS:1 COG:SP1416 KEGG:ns NR:ns ## COG: SP1416 COG0809 # Protein_GI_number: 15901270 # Func_class: J Translation, ribosomal structure and biogenesis # Function: S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) # Organism: Streptococcus pneumoniae TIGR4 # 3 343 1 341 342 530 72.0 1e-150 MTLTTEDFNYDLPHELIAQTPIKKRDASRMLVLDHKTGEMADKHFYDIVDQLNPGDAIVM NDSRVMPARIYGVKEETGGHLEVLLLHNIEGDRWETLVKPARRAKVGTKITFGDGSLTAT VKKELDHGGREIEFEYDGIFMEILEKLGEMPLPPYIKEKLDDPERYQTVYSKEPGSAAAP TAGLHWTKELLQKVQDKGVKLVYLTLHVGLGTFRPVDEENIEDHKMHSEFYRLSEESAAT LNEVRKNGGRIIATGTTSIRTLETIGTKFNGEIKPDSGWTDIFIKPGYEWKVVDAFITNF HLPKSTLVMLVAAFTGRETILNAYKHAVEEKYRFFSFGDAMFIK >gi|269838497|gb|ACXB01000014.1| GENE 51 45707 - 46720 902 337 aa, chain - ## HITS:1 COG:lin1567 KEGG:ns NR:ns ## COG: lin1567 COG2255 # Protein_GI_number: 16800635 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, helicase subunit # Organism: Listeria innocua # 3 330 2 329 335 429 66.0 1e-120 MDDERITSSAVQGAQEEANEQSLRPQNLRQYIGQAQIKHELSVYIEAAKKREEALDHVLL YGPPGLGKTTLAMVIANEMAVQIRTTSGPAIEKPGDLVALLNELQPGDILFIDEIHRLPK VVEEMLYSAMEDFFVDIVVGQGPTAHPIHFPLPPFTLIGATTRAGLLSAPLRDRFGIVEH MNYYTEDDLANIVKRSAEIFKTNIDDQGAHEIARRSRGTPRISNRLLKRVRDFAEVENDA HIDRTLVQTSLKLLQVDDRGLDQTDKKVLTTMIELYGGGPVGLTTIAANIGEEPDTISEM YEPYLLQIGFLKRTPRGRMVTERAYAHLGLENLYMNK >gi|269838497|gb|ACXB01000014.1| GENE 52 46731 - 47318 684 195 aa, chain - ## HITS:1 COG:L0266 KEGG:ns NR:ns ## COG: L0266 COG0632 # Protein_GI_number: 15674189 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, DNA-binding subunit # Organism: Lactococcus lactis # 1 194 1 197 197 183 50.0 2e-46 MYEYLNGVVVDINPAYIVIDVNGVGYLVNVANPYSFKPDEKQKVYVHQAVSETENTLYGF KKYVDKELFLNLLKVKGIGPKSALAILANDDHQGFIRAVNNDDVNYLKKFPKIGPKAAKQ IILDLKGKITSNEPSGPLFEMPTTTNNTLDEAIEALAALGYSERELKKITPKLDELSNQT TDQYISAGLKLLMKG >gi|269838497|gb|ACXB01000014.1| GENE 53 47364 - 49286 1463 640 aa, chain - ## HITS:1 COG:SPy2121 KEGG:ns NR:ns ## COG: SPy2121 COG0323 # Protein_GI_number: 15675871 # Func_class: L Replication, recombination and repair # Function: DNA mismatch repair enzyme (predicted ATPase) # Organism: Streptococcus pyogenes M1 GAS # 1 633 1 653 660 613 49.0 1e-175 MAKIQELSDILADQIAAGEVVERPASVVKELVENAIDAGSSRIDILLAESGLKMIRVIDN GSGIEGSQVETAFKRHATSKITSRADLFRVGTLGFRGEALPSIASIADVKMTSSTAEGPG QFVHYRGGELIEHREAQSRQGTDITVSDLFFNTPARLKYLKSLATELSKITDIINRIALS YPEIAFSLQNDERQLMRTSGQGNVQQVLANIYGTHNAQKMLDIHGESVDFRIDGYVSLPE FTRANRSYITILVNGRYIKNFHISKAIIEGYGSKLMVGRYPVAVINIQTDPLLVDVNVHP SKLEVRISEENTLTELISKTIFDRLADQNLIPDAVDNLKKKRISKPAGEQLDLTETVLSG SFGKPTPTESAAVEEDDSTAALHPSVAATKPIIISTRQDLQSDRIAEFKEKYADSTTPVT KNENTEGEEKTPSTSRFPALTYIGQMHGTYLFAEADDGLYIIDQHAAQERINYEYYRVQI GQVSDDQQDLLVPIYLDYSTTDTLRIKEKQSVLEACGLYLEEFGRNTFIVRHHPTWFKKG QEEDTVKEMVDYVLNDRNMTVAKFREATAIMMSCKRAIKANHHLDDLQAKQLLKDLAKVE NPFNCPHGRPVLVHFSTTDMEKMFKRIQDPHNTNLIDEDL >gi|269838497|gb|ACXB01000014.1| GENE 54 49298 - 51820 1997 840 aa, chain - ## HITS:1 COG:lin1440 KEGG:ns NR:ns ## COG: lin1440 COG0249 # Protein_GI_number: 16800508 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Listeria innocua # 3 838 22 859 860 873 53.0 0 MLFLFYRIGDFYELFYDDAIKGSQLLELTLTARSKNADDPIPMCGVPHHAAQNYIDILVD QGYKVAICEQMEDPKAAKGMVKREVIQLVTPGTTTDQKAEDAKENNYLTAVSFDAATKKY GFAYTDLSTGELKVAILDDIESVVNEAVGLRTREIVADQYFVEHFGERFKELNILVSQQN DVEISAELSYLIQNLTSPIAVQVVKQLLMYVQVTQKRNLAHMQKAIAYEPSFYLRMDHAS KYNLELTRLIRTGKKQGTLLWLLDETKTAMGGRLLKQWLDRPLIRKDAINARQSRVQVLL EHFFERSNLQEELTKVYDLERLAGRVAFGNVNGRDLIQLKTSLLQIPKIRHVLAELDDPV FDEALTRLDPVSEIADLIEAAIDEDAPISVTEGNVIKDGYNPKLDEYRDAMRNGKKWIAD LQAQERQATGIKNLKIGYNKVFGYYIEVTRANLASVPEGRYERKQTLTNAERFITPELKE KERIILEAEQKSTDLEYELFKKIRETIKEQIERLQNLAKQVAELDVLQSFAVVSEEYQFV KPTMTESHEIEIKAGRHPVVEKVMGHQSYVPNDILMNQDTEILLITGPNMSGKSTYMRQL ALTVIMAQMGCFVPAEEANRALKDGTANSLILFDEIGRGTATYDGMALAQSIIEFIHQNV HAKTLFSTHYHELTALDQTLTRLKNVHVGAVEQDGNLVFLHKMEDGPADKSYGIHVAKLA GMPDSLLARASVILEQLENENQGDAAKLTASETPQPVFTASQAAETQPADQSGAEESSVT SSSREVVEEQMALFDTTPAQKKTNQLQTQVVEQLTNLNLMDMTPMEVMNQLYKWQKKLRK >gi|269838497|gb|ACXB01000014.1| GENE 55 51759 - 51887 181 42 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MPQKTSDTPMMRQYMEIKKQYPDAFFILPDRGFLRVVLRRRH >gi|269838497|gb|ACXB01000014.1| GENE 56 52012 - 53571 1586 519 aa, chain - ## HITS:1 COG:lin1436 KEGG:ns NR:ns ## COG: lin1436 COG1418 # Protein_GI_number: 16800504 # Func_class: R General function prediction only # Function: Predicted HD superfamily hydrolase # Organism: Listeria innocua # 6 519 7 520 520 523 61.0 1e-148 MVIYYIILAIIAIVVGYCAGYIMHKRFIEKQTADASNSADLIIENARQQAETERREKLLE AKDESHRYRAQVEKELKERRAELQKQEDRLLQREDVLDRKDSSFEKRENSLERKEQKLAA DQKLIDEQQQKASSLVEERQQELERVSNLTQEDAKSLIISEVKAKLEKERALIIKESLED AQNQADETARKVIAQAIQRSAADMASETTITVVSLPNDDMKGRIIGREGRNIRNFENVTG VDLIIDDTPEAVVLSSFDPIRREIAHIALEKLIQDGRIHPARIEEMVEKAKKELDDTIRK TGEQAVFELGIHSMNPELIKLIGQLRYRTSYGQNVLNHSIEVANLAGVLAAELGEDVTVA KRAGLLHDIGKAVQHETDTSHVELGVELAKKYKESAVVVDAIASHRNNNEANHVISVLVA AADSISAARPGARSDTLQSYIHRLEKLEQIANQFDGVKKSYAIQAGREVRVIVKPTKIND LKAVMLTHQIRKAIEKQLEYAGKIKVTIVREVRAVDFAK >gi|269838497|gb|ACXB01000014.1| GENE 57 53669 - 53827 93 52 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGRKEVGIVPASFSTLSVIGKDLFKLIIYQTLKGVPSFRKASTNQRWALKTY >gi|269838497|gb|ACXB01000014.1| GENE 58 53840 - 54895 1234 351 aa, chain - ## HITS:1 COG:lin1435 KEGG:ns NR:ns ## COG: lin1435 COG0468 # Protein_GI_number: 16800503 # Func_class: L Replication, recombination and repair # Function: RecA/RadA recombinase # Organism: Listeria innocua # 3 338 2 340 348 483 74.0 1e-136 MADERKEALNKALKKIEKNFGKGSIMRMGDAVDTQISTIPSGSLALDDALGVGGYPKGRI VEIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYATNLGVNIDDLLLSQPDT GEEGLAIADALVSSGAIDLVVIDSVAALVPRAEIDGEMGDAHVGLQARMMSQALRKLSGS INKTKTIALFINQIREKVGIMFGNPETTPGGRALKFYATIRLEVRRAEQIKDGSDVIGNR VKIKVVKNKVAPPFKRAEVDIMYGEGISQTGEMIDMAVEKDIVGKSGSWYSYGEERIGQG RENAKKYMEDHPDVRAEVLAKVREAYGMVADPASEVKEDSKQDDQAELDLK >gi|269838497|gb|ACXB01000014.1| GENE 59 54911 - 55000 65 29 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVKGDFGIILNFNQLEASALTGNVQYKTH >gi|269838497|gb|ACXB01000014.1| GENE 60 55066 - 56307 272 413 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase [Cryptobacterium curtum DSM 15641] # 256 407 747 898 904 109 41 1e-22 MKAEIISVGTEILLGEITDTNAVYLSQQLAQLGIDVYHQATVGDNSTTMKETLEIASKRS DLVITIGGLGPTEDDITKPTLAAFLGEELVVDDRALEKVREHFTKQGRPITPNNERQALL LKGSRPVKNPNGLAIGLFATTPTTDYLVLPGPPSEFRPMVNQEVLPLLKERYSLDKTIQS KTLHFVGVGEADLATRVDDVIRRQSNPTIALYFKPTDVTIRLTAKADSKDEAEQMLEKTK AEILARAGDYYYAEGEQVAFPDFVVQELIKRKLTLTAAESLTGGAFQNQLVKTAGTSAVF SGGFVTYSDEVKTSLLGVRPETIAQYTVVSRPVAEEMARGAQKQLGTDLAISFTGVAGPE GLEGHAPGDVWIGLALPDGSTVAKGFHFSGNREKIRHLAVMNGFRMIWEQVVK >gi|269838497|gb|ACXB01000014.1| GENE 61 56445 - 57026 286 193 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase [Cryptobacterium curtum DSM 15641] # 5 181 484 661 904 114 37 3e-24 MNLPNKLTVFRIILIPIFIILTVMPEVGGSVWWLGTPIAITKIWGAVVFAVASITDFLDG QIARRQHLVTNFGKFADPIADKMLVMSAFIILVSMKMAPAWVVAIIVCRELAVSGLRLII VENEGEVLAAAMPGKIKTFSQMFAIIFLLLNNLFANYLHFGPGTVLLYVCLFFTIYSGID YFYQNRSIFADSF >gi|269838497|gb|ACXB01000014.1| GENE 62 57039 - 57917 878 292 aa, chain - ## HITS:1 COG:lin1432 KEGG:ns NR:ns ## COG: lin1432 COG1426 # Protein_GI_number: 16800500 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 9 229 4 229 311 63 26.0 3e-10 MGTKKYKVIGMRLQDARLKKGWTLDEVQLKLQISKRYLMALEAGEDDDLPGDYYTQSLIK QYANLLGVEVGNRHLENEPESIKEWRRTHGEVTSRAQKELQQKPSVLSGLIHQHPWLMGI ILVGVIWLLVWTAFSEMANRYPSQLVAQKNPTVIDKTKKSHHKTNASKTKSTHPSAKKQS KQTTTKPKIEKVNDSADNLRVTLPDEQKHATLKLKTGDNQSWNSLTATAPQAATVAQGVM EAHQTQHFKLKKGYTYVLKIGNTIGLKGSIGGRKMPDPATGVTVRSVTLVVN >gi|269838497|gb|ACXB01000014.1| GENE 63 57960 - 58685 823 241 aa, chain - ## HITS:1 COG:lin1431 KEGG:ns NR:ns ## COG: lin1431 COG1028 # Protein_GI_number: 16800499 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Listeria innocua # 1 239 5 241 243 217 46.0 1e-56 MKFALVCGASGNIGMAISRRLAKQGWSLYLHYHQHAATVEELVRELQRQYPKQDFLMVQA DFRNEAAAEEIDAQIFSLDAIVFAQGTTIYQLFDEFDGTQLENLWLEHLKVPLLVIKKLV SKLAEGGHGRIVFIGSVYGAVGSAMEVPYSMLKGAMSSFVNAYAKEVASLGITVNVVAPG AVQTQMNANFAEDEIEAISEEIPVGRFAKPDEIAYLVETVLAETASYLTGQTIYVDGGWQ K >gi|269838497|gb|ACXB01000014.1| GENE 64 58702 - 59994 1064 430 aa, chain - ## HITS:1 COG:lin1430 KEGG:ns NR:ns ## COG: lin1430 COG0612 # Protein_GI_number: 16800498 # Func_class: R General function prediction only # Function: Predicted Zn-dependent peptidases # Organism: Listeria innocua # 13 430 11 427 428 308 41.0 1e-83 MQIKEKAYSVFDERLFSATLANGLQINILPKADFQKTYAVFTTNLGSMDRNFRVGEQKLQ IPAGTAHFLEHKLFEKADYDAFQIFARNGADSNAFTSYSKTSYLFSATSRLKENLTTLLD FVQDPYFSSASVAKEQGIIGQEIQMYNDDVDWQLYMGMMRNLFPKQALSEDIVGTSTSIA QITPELLYKVHQVFYHPQNMHLFVTGNLDPQMVVDWVEENQRQKQFTEFVQPVNLQKAEQ KILPVVEQSSAVCLANRPKVMLGIRNNRYLPAPGLERLKYLLTLDLGLYLLLSSSSKNYL KLYDEGLLDDTFGYDLNNERDELFLTMGGDSDHPQQLAAALKEILRQGLTDTPELAADFA LAKKEMYGRCIARMNSLEAIANSFEGALYGNATIFDEAQMFKEISLTEVIEALGQFVSEQ VISSFEIKPK >gi|269838497|gb|ACXB01000014.1| GENE 65 59994 - 61253 1099 419 aa, chain - ## HITS:1 COG:L32666 KEGG:ns NR:ns ## COG: L32666 COG0612 # Protein_GI_number: 15673955 # Func_class: R General function prediction only # Function: Predicted Zn-dependent peptidases # Organism: Lactococcus lactis # 13 416 4 404 418 224 34.0 2e-58 MDVQMRPGVQALIVPSKKFKTVRIDVHFLKNATVAELAPRTLVANLLETSTQRYVNQIQF THALSAMYGASFGVGAGKKGNLHDIGFSITVANDHYTGGQSLVRMAIEFLNEVISHPLAN NGRFDEQTFARQKTNLINYVDSATEDKQFWASQQLRKLAFGANRIQGVPSYGRRADLQNL QNEQVYATYLSMLRHDLVHISVSGDVDEQKVLEDLAILELPERKVRLGSVITKFNSLPKP RHRVANQAVQQARLNLAYDIPATVVSDNFHAAVVFNALFGGSPQSKLFLNVREKASLAYY ASSSLDLYNGLLTVQTGIEASNYAQAKQIIQQQIVDLQAGQFTESDLTSIKAGLRSDYLA GLDLQRTIHRRGLNEYLLGFHRPAEQWLNDLDRVGAAQIVEIARQLKPRAEFFLNGDND >gi|269838497|gb|ACXB01000014.1| GENE 66 61414 - 62841 1335 475 aa, chain - ## HITS:1 COG:lin2646 KEGG:ns NR:ns ## COG: lin2646 COG1502 # Protein_GI_number: 16801708 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes # Organism: Listeria innocua # 12 475 15 482 482 452 45.0 1e-127 MLLASVVGYLLNLLFAFGIALMEKRDISAAWAWLLVIVLLPGIGLIIYLFFGWKLSQRQI FNLKAQKHLGISDMADHQKQSTQNRVSLSTTLENDLVTMFLNTDDAILTSQNDLQILTDS QAKFKKLFQDLRGAQHHINIEYFTIYDDDLGHQLREILVKKAREGVRVRVLYDLFGSKGA KQKFFRPLIAAGGEVTPFMRSKFGYYSFRINFRNHRKIVVIDGSIGYIGGFNVGDQYLGK NRRFGNWRDTHLRLVGSVVLQLQSRFFMDWNASVTDPKLTFSLNYFPQTALEKKLPMQIV SSGPENDIQKIKQGYIKMIMGAKHSIWIETPYFIPDDALMEALLIALRSGIQVWMVIPKM PDHPFVYRATEYYAKQLLAAGARVFAYQKGFMHAKTIVVDQSITSVGSANWDIRSFKLNF EANAFIYDAKVAQKMIAIMKQDVKDAHELDEQYFASQSRWKKFRQLASRMIAPIL >gi|269838497|gb|ACXB01000014.1| GENE 67 62924 - 63709 624 261 aa, chain - ## HITS:1 COG:lin1849 KEGG:ns NR:ns ## COG: lin1849 COG0834 # Protein_GI_number: 16800916 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Listeria innocua # 1 260 10 264 271 258 48.0 7e-69 MACALLIPGLAGCGKTAQNNPQPSSWKSIQAKHHVVIGLDDSFVPMGFRQKNGKLAGYDI DLARAVFKQYGIKVDFQTIDWSMNVTELRNQTVDLIWNGLTITDERQRAMAFSEPYLVNQ QVLVVKKSQHIHSPQDMTGKTLGVQSGSSGAQDIDRFPKLLKQRIKKHTPVLYDTFNNAF IDLKADRIQGLLIDSVYANYYLQHLPNPGDYRVIKSGMPNEYFAVGIKKGNQEVKQKIDQ GIEHLRKTGELQRINQKWFGK >gi|269838497|gb|ACXB01000014.1| GENE 68 63743 - 64378 382 211 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 205 1 210 245 151 37 3e-35 MLELKNISKSYNGRTIIDNLNLQIQDGHILTIVGPSGAGKTTLLRCISGLEKIDSGSFLL DGKPFNPFETRDSESVIGVVFQDFQLFPNLSVIENITLAPMNVLHLSEREALQRVEEIID RLSLAKIINQYPYQLSGGQKQRVAIARALAMNPRILCYDEPTSALDPELRDEVSRMILDL KQNQITQVIITHDIEFAEKIADETLTVKPVN >gi|269838497|gb|ACXB01000014.1| GENE 69 64396 - 65046 656 216 aa, chain - ## HITS:1 COG:lin1851 KEGG:ns NR:ns ## COG: lin1851 COG0765 # Protein_GI_number: 16800918 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Listeria innocua # 4 216 1 213 213 233 61.0 2e-61 MFNIQYISEILPSLLSGAAMTLQVFIWTIIGSLILGVFLALGLVSKFKPLQYIISAYVWL MRGTPLLLQLIFVFYGLPTVGIVFPRYEAALFAFILNYAAYFAEIFRGGLQSVDKGQYEA GRVLQMTYWQTTKKVVLPQVAKIVLPSIGNEVINLVKDSSLVYVIGIGDLLRAGNVAAAR DVTLVPFILVGIMYLILTGICTFFLRKVEKHYSYFR >gi|269838497|gb|ACXB01000014.1| GENE 70 65545 - 66090 501 181 aa, chain - ## HITS:1 COG:no KEGG:PEPE_1287 NR:ns ## KEGG: PEPE_1287 # Name: not_defined # Def: rod shape-determining protein MreD # Organism: P.pentosaceus # Pathway: not_defined # 1 180 1 180 181 213 77.0 3e-54 MLQSAKLKYLFPIILFGTFFLDGALNQIFSAVLFQYPYSMICNLTLMWFVMGIFFEGESQ INFTLWAFVIGIVFDWYYTGVFGVNTFIIPLVVMFVREVRLYVNTSFLIVMVLDTLAMAL YNVLFYAVFQAIHLANVSASFFIGYSFFPTIILNLALFVVLYYPIKTFFRRTRGTNYRSF G >gi|269838497|gb|ACXB01000014.1| GENE 71 66100 - 66945 933 281 aa, chain - ## HITS:1 COG:BH3030 KEGG:ns NR:ns ## COG: BH3030 COG1792 # Protein_GI_number: 15615592 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell shape-determining protein # Organism: Bacillus halodurans # 1 277 1 275 293 158 30.0 9e-39 MHKFFSNRKLVLTVICAIIAAGLITGSLALGKKDKTPAVQKLGNDLFGAVSRVIAIPAHG MQTLSTNLNNFVATYEENERLRQDIDKLSATHAENKSLKEENRELKQLVGLKNSMTDYSL TPAIVLTRSPSSWQDLVTVNKGTANGVKKNQPVLAGNGLVGRVVEANYSTSKVELISDNN ESANRFAIQVQAKDGNYVNGIITGYDKKTNEIIMGQVTEDKDVAVGSQVITSGLGGVTPK GLYVGKVAKVSKEDYGLANEIRIKPAAKLSNVNDVYIAKLD >gi|269838497|gb|ACXB01000014.1| GENE 72 67034 - 67702 510 222 aa, chain - ## HITS:1 COG:BS_ysxA KEGG:ns NR:ns ## COG: BS_ysxA COG2003 # Protein_GI_number: 16079856 # Func_class: L Replication, recombination and repair # Function: DNA repair proteins # Organism: Bacillus subtilis # 3 219 15 231 231 136 36.0 3e-32 MLLKDGAREKLTKIGAENLTNAELLRAFLSCCGQEQAVNRLSQEFWDQVGDIVGYSLLTQ RERQTIFSQLPAESLALEAAIELGRRVQRQPIHLLGKVLGSAQIGNLMVARFQKNPQEHL VLLCLDTKNQIKQERVIFKGGLNSAEVHPREIMAEVLRYSSNGFILVHNHPSGNVEPSMN DVAFTKKMKKIGDLMGIRLIDHLIVGDQTYWSAAENRVLNDC >gi|269838497|gb|ACXB01000014.1| GENE 73 67745 - 69019 975 424 aa, chain - ## HITS:1 COG:BS_folC KEGG:ns NR:ns ## COG: BS_folC COG0285 # Protein_GI_number: 16079860 # Func_class: H Coenzyme transport and metabolism # Function: Folylpolyglutamate synthase # Organism: Bacillus subtilis # 3 423 5 430 430 347 43.0 3e-95 MNYEEALAFVHGRPRLRKAPTLKRMRQFLTELGNPQTKIQAVHVAGTNGKGSTIAFLTSL LGQEGRQVGTFTSPFITRFNERIAVNGQPISDEAVANLVTQVRPVVEKMDQTELGGPLEF EIVTAMMFLYFAQHPVDVVLVEVGIGGLYDSTNVFTPLVSVITNVGWDHMALLGNTLPEI AQQKAGIIKPHVPVVTGVQVPEALTVIKRVANEQHAPLMVLDDDFKLTGDPADFESNDCH VSNIKSGLLGVYQLKNLAVAIQAAVVLSRQRGWKLSADQIRRASLQARWPGRMEIMQQAP LVVLDGAHNLPGVQALKQSLQTYWQDRPIHILAAILDDKLFQPMIDELLTIPNAQLTLTN FQNPLHRQVVQPAELVANEARQINYEANWRTALRQLIKQANPRDVVIITGSLYFVSEVRP LFKK >gi|269838497|gb|ACXB01000014.1| GENE 74 69178 - 71841 2579 887 aa, chain - ## HITS:1 COG:BS_valS KEGG:ns NR:ns ## COG: BS_valS COG0525 # Protein_GI_number: 16079861 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Valyl-tRNA synthetase # Organism: Bacillus subtilis # 2 884 3 879 880 1181 63.0 0 MTKEVEMSTKYEPQKVEQGRYQEWVEKGLFKPNGDKKAKPYSIVIPPPNVTGKLHLGHAW DTTLQDMLIRQKRMQGYDTVWVPGMDHAGIATQAKVEAKLREQGVSRYDLGRDKFIDKVW EWKDEYADTIHQQWAKMGLSLDYGRERFTLDEGLSKAVRKVFVTLYNEGLIYRGEYIINW DPQARTALSDIEVEHQDDQGAFYHVKYFFADPDFTFNGKNYIEIATTRPETMFGDVAIAV HPSDERYQDLVGKEVILPLQGRHLPIIADQYVDPEFGTGMVKITPAHDPNDFQVGNRHNL ERINTMNDDASMNENAGKYEGLDRFEARKAMVKDLEDQGYMIKIDPIVHSVGHSERTGVQ VESRLSTQWFVKMDKLAKMALVNQDTDDKVNFIPERFEHTFKQWMENAHDWVISRQLWWG HQIPAWYHKETGEVYVGEEAPKDVENWEQDPDVLDTWFSSALWPFTTMGWPDENAADFKR YFPTSTLVTGYDIIFFWVARMIFQSLKFTGKRPFKDVLLHGLIRDEQGRKMSKSLGNGID PMDVIDKYGADALRWFLSNGSTAGQDLRFSYTKMDAAWNFINKIWNASRYVIMNLDQVDK PQLPALNELNLADRWILSRLNHTVEQVTHFFDVYDFGEAGRALYTFIWDDFCDWYIEMSK EILNGDDQTAQVNTQNVLAYVLDQTLRLLHPVMPFATEKIWLSMPHEGESLVTAAYPVSH PELTDEAAEEGMSHLIELIKAVRNIRSEAGAPMSSPVDLLIKTDNEALVKLFNENRDYID RFCHPAEFELGATVEAPKLSMSAVITDGEIYIPLAELVDLDEEIARLEKEEQKYEQEVNR VVKKLQNEKFVNNAPAAVVEEQRTKKTDYEGKLAATRRRLADIRSGK >gi|269838497|gb|ACXB01000014.1| GENE 75 72140 - 72631 524 163 aa, chain - ## HITS:1 COG:BS_ytgI KEGG:ns NR:ns ## COG: BS_ytgI COG2077 # Protein_GI_number: 16080001 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peroxiredoxin # Organism: Bacillus subtilis # 2 163 3 165 167 133 42.0 2e-31 MEILRGGQKVELVGNPPEVGDQLPKFKVFTAKGAKVKTRDLLGKPLLLSVVPDLNTRVCS IQTKAFNQQADNYPEVRFVTISNNLPQDQANWCAAEGVNNLEVLSDHELSFGYEMKLYIP NAGYLARSIFIADASGKIVYREIVPELHSEPNYEAALEVIKQM >gi|269838497|gb|ACXB01000014.1| GENE 76 72801 - 74018 1194 405 aa, chain - ## HITS:1 COG:L183112 KEGG:ns NR:ns ## COG: L183112 COG0301 # Protein_GI_number: 15672361 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine biosynthesis ATP pyrophosphatase # Organism: Lactococcus lactis # 3 405 5 406 406 464 58.0 1e-130 MEYTEIMVRYGELSTKGKNRKDFIARLGGNIRKSLKDFEQVVVHPNRDRTHVTLNGASSA AVIARLKRVFGIQNLSPMLKVEKSMEAVQEGALAMMKEQLKPQMTFKINTRRSDKDFPIN TDTMNRELGGFILENFPESQVKMKNPDITLRVEIRSNGIFLTSEVIDGAGGLPVGTAGKG MMMLSGGIDSPVAAYLGMKRGVEMEMVHFFSPPYTSEQALAKAKELSGKLAAYSGNVQFL QVPFAEIQETIKEKCPEGYLMTIQRRMMLRLTVALAQKRGGLAIFNGESLGQVASQTMES MMAINDVTTMPIIRPVVSMDKNEIIEIAKEIDTYDLSIMPFEDCCTIFAPPAPKTRPDLE KARYYESKIDVEGLMKRALDGVQVTNIHAGEEFLNQNEEVFAELL >gi|269838497|gb|ACXB01000014.1| GENE 77 74031 - 75185 1185 384 aa, chain - ## HITS:1 COG:L122222 KEGG:ns NR:ns ## COG: L122222 COG1104 # Protein_GI_number: 15672519 # Func_class: E Amino acid transport and metabolism # Function: Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes # Organism: Lactococcus lactis # 1 381 1 380 381 440 57.0 1e-123 MIYFDNSATTQVDKTVLETYQKVSNQIWGNPSSLHNMGETAFNLLEQSRKQIADLLNVQP HEIFFTSGGTEGDNWVIKGTAIEKRAYGKHLITTTVEHPAVQNTMAQLEQLGFDVTYLPV DDEGRISIQDLKDAIRPDTILVSIMAVNNEIGTVQPLTEVAEVLKDYPKIHFHVDAVQGI GKGIQSAIMNDRVDFVTFSGHKFHAPRGVGFIYARQGRRIAPLMTGGGQEKNLRSGTENL PAIAAMAKALRLLLTDEKQKVAHQAQVKQAIYDHVTSFDKVVTFSKCDAGFAPHILCFAI KGVRGETIVHAFESHDIYISTTSACSSKKQQASSTLTAMNVDQQISTSAVRVSLDSANTM EEAERFNKVFDQLYQDFSKINQNA >gi|269838497|gb|ACXB01000014.1| GENE 78 75421 - 77130 1912 569 aa, chain - ## HITS:1 COG:SPy0728 KEGG:ns NR:ns ## COG: SPy0728 COG4477 # Protein_GI_number: 15674783 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Negative regulator of septation ring formation # Organism: Streptococcus pyogenes M1 GAS # 1 566 5 570 574 206 25.0 1e-52 MIIVLISVIVVAILVYLGIVAYQRYLLKQVDELLNRKADISESPIRQKLMEVSSMNLTGS SAVGLDNIRNDYQEIIDHRLPEVEDIANHSRQNINDMKIFEARKDITTVSETLDAIEEET KRLNDQLDNIQRIDQEQRDAVKVLRMKYQEIGKQLLDQNLSLGPSIDLLEEKLSRLNDDF DTFNQTVDAGDHEKAEGQLKKLKASTSEIEAEIKAIPSLYDELTNLFPSQIEEVRDGYDQ LINHNYAFENDTVKDEIKAIKAKINDNLETLSNLRLDAVRANNKAIEIRIDELYDILQTE IDARKSVEHNFNVITRFLDHAEKQNKVLLSEIARLDQSYVLNDDQLNLGQVLEGQLNDIR NEHDRDTERITNQPVVYSEIVERLKEENEQLTEIEDRQAALNSELQEMVDSEKDARTRLQ QYDNEIHNIKRHVETLNLPGIPEGYMDYFFVVSDEIEKVGSDMNQVRINMGMINRELDMV STDIQTLIKKTSDLTDDAAISEAAIQYANRYRHTDEEVAAASQQAQKLFDKDHRYNESLS VISKALDKVEPGAIENITENYYQQKKTEY >gi|269838497|gb|ACXB01000014.1| GENE 79 77294 - 77779 304 161 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15902812|ref|NP_358362.1| hypothetical protein spr0768 [Streptococcus pneumoniae R6] # 11 150 15 152 165 121 44 3e-26 MSKTIAPIIIDQIDALLTDEPHPIANLANAAALLYSEISDLNWAGFYLYDANADELILGP FQGKVACMHIQNGRGVCGTALKQQSTLRVANVHEFPDHIACDSASNSEIVIPLMVEKQPI GVLDIDSPSLNRFSATDEQVLNDFVATLMKHIDKSVLRALN >gi|269838497|gb|ACXB01000014.1| GENE 80 77853 - 77942 54 29 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229552047|ref|ZP_04440772.1| ribosomal protein S4 [Lactobacillus rhamnosus LMS2-1] # 1 29 3 30 239 25 51 7e-86 VPLAAAKVKITEQSARILNPHLFILLQQK >gi|269838497|gb|ACXB01000014.1| GENE 81 77962 - 78570 991 202 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|116493045|ref|YP_804780.1| 30S ribosomal protein S4 [Pediococcus pentosaceus ATCC 25745] # 1 202 1 202 202 386 95 1e-106 MSRYTGPSWKVSRRLGISLSGTGKELARRPYAPGDHGQNNRRKISEYGMQLREKQKLRMM YGLTERQFANLFDRASKMREGVPGTNFMILLERRLDNMVYRLGLATTRRQARQLVNHGHI TVDGKRVDIPSYEVEIGQVIGVREKSKDLKIINEAVEAVVGRPQFVQFDADKLEGSLVRL PERDELEAEIDDSLIVEYYNKL >gi|269838497|gb|ACXB01000014.1| GENE 82 78628 - 79905 1065 425 aa, chain + ## HITS:1 COG:lin1549 KEGG:ns NR:ns ## COG: lin1549 COG2256 # Protein_GI_number: 16800617 # Func_class: L Replication, recombination and repair # Function: ATPase related to the helicase subunit of the Holliday junction resolvase # Organism: Listeria innocua # 1 421 3 423 427 572 68.0 1e-163 MQPLAYRMRPRTLEEVVGQKHLVGPGKIISRMVKAKRLSSMILYGPPGTGKTSIASAIAG STKYAFRMLNAATDSKKQLQIVAEEAKMSGTVVLLLDEIHRLDKTKQDFLLPHLESGQII LIGATTENPYININPAIRSRTQIFEVKPLTPADIKEAVEMALQDSQRGLGDLPLQMDENA LQFVSEATGGDLRSALNAVELAARSTSPSDDDKIHLTLEILQECLQKRALTQDKDGDAHY DVISAFQKSIRGSDTDAALHYMARLLESGDLKSVIRRLLVIAYEDIGLANPPVCQRTVAA VTAAEHIGLPEARIPLANAVIELCVSPKSNAAITAIDNALGDIRDGKIGEVPDHLRDAHY QGAKALGRGTDYLYPHNYQNDWVPQQYLPDQLKNATYLEAKGNSPFESKIYEQYQNLKKS QKSGL >gi|269838497|gb|ACXB01000014.1| GENE 83 80172 - 80450 258 92 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLIPGLMVIFSLIIFYIGNYLYRHQHRDFMLFKPTSNSLLSSSLRIIGILLMIVSMLTLI AGISSSTPLIVAGLVLGIVSTTGTLLFLLKFL >gi|269838497|gb|ACXB01000014.1| GENE 84 80517 - 80972 610 151 aa, chain + ## HITS:1 COG:lin1615 KEGG:ns NR:ns ## COG: lin1615 COG0589 # Protein_GI_number: 16800683 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Listeria innocua # 1 150 1 149 152 155 55.0 3e-38 MAQQYKHILVPVDGSKEAELAFRKAVAVAKRNDGAELHLLHVIDTRAFQNISNFDNAMVE QVTETAKKTLDRYVEEAKNDGLENIAYSIEYGTPKAVISQDVPKELHTDLIMIGATGLNA VERLLIGSVTEYVTRTATCDVLVVRTSLENN >gi|269838497|gb|ACXB01000014.1| GENE 85 81272 - 81835 257 187 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164512|ref|YP_001467500.1| 50S ribosomal protein L24 (BL23; 12 kDa DNA-binding protein; HPB12) [Campylobacter concisus 13826] # 5 180 4 179 185 103 32 8e-21 MRESCQWATVSPVLKKYHDQVWGRSVFTDQALFESLTRQVFQSGLKMQMVLAKLPEMAPV MDDWQIEAISRYSEAKVQQLLQDPLMIKNERKVRSVIHNARIIQQMAQHKQSFSDWLWAQ VGFVPLDLQQRTNTKVLVQHPVAKRVCQEMKAQGFEFVGPRNVSFFLQDAGLLNGHWVNC EYYQKWN >gi|269838497|gb|ACXB01000014.1| GENE 86 81882 - 82937 1357 351 aa, chain - ## HITS:1 COG:PA4201 KEGG:ns NR:ns ## COG: PA4201 COG1181 # Protein_GI_number: 15599396 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanine-D-alanine ligase and related ATP-grasp enzymes # Organism: Pseudomonas aeruginosa # 1 338 6 330 346 228 39.0 1e-59 MKIAVLAGGKSTERNVSLSSGSKITDALRAKGHEATMIDLFLGYDLQEGQTVEDVFETSN TDSDYEIQTDVLTDADIEKLRTDGTVGLFGKNVLEILRAADFVFLALHGGDGENGKVQAV LDLNDIKYTGSGTLASGIAMDKAISKEIMLYNDIKTARFVVLHEEDGIHPQLDFGFPVVV KPNSGGSSVGTMIVHDEEELADSLRDAYRFDDEIIVEEFITGREFSLGVVNEQAMPAIEI VVNDGWYDYEHKFKTGTTTQFITPPDIDEEVHDEMKRVAVKTMKVLGMTNYGRVDFLVND QGVYVIEANNLPGMTPLSLLPQEAEAAGISYEDLCESIILGKQKLYQEAEK >gi|269838497|gb|ACXB01000014.1| GENE 87 83065 - 84039 501 324 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|170016569|ref|YP_001727488.1| ribosomal protein S2 [Leuconostoc citreum KM20] # 1 322 1 327 329 197 33 4e-49 MDAIETTRQKLSHLRVRLQQGKIFASLGRSVGAIIDAANENQTVKPVTLPDDQDGIEELL QRIRAALGKGKLEELSDADLDLMLQHLGSPNPIIRDKGVFYLFNDLIQNQVLTKAQMVRT FDRLTSDQVLFAHINEKENDAAFLRSFAVMMLASLIYIDRAGAAFIDHARKNKLVEQLAI YIMLENDTRGFVANQGWVHAYTHIGNVLDELASDEELLRADKILLMATVIEKFRRLTTPL IYGEPTRLAVYFADQLLEDDVYQQFLLIELREWRRALASTQVRETQAMWNAIFNRQRLLQ AMMLNSNMAKAVVEYLEDSNDFTI >gi|269838497|gb|ACXB01000014.1| GENE 88 84218 - 85642 1492 474 aa, chain + ## HITS:1 COG:SA2396 KEGG:ns NR:ns ## COG: SA2396 COG0531 # Protein_GI_number: 15928189 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Staphylococcus aureus N315 # 1 472 1 471 482 638 73.0 0 MSSFIKKFIHKEDPSQYEDKDANLVRTLTVKDFLSLGVGTIVSTTIFTLPGVVAAEHAGP AVVLSFLAAAVVAGLVAFAYAEMASAMPFAGSAYSWINVIFGEGFGWIAGWALLAEYFIA VAFVASGLSANFRGLISTVGLKLPAALANPLGTNGGIIDIVALIVILLVAILLACGTSEA ARIENALVVLKVLAIILFIIVGVTSVHLSNYVPFIPHPRVLPDGSHFGGWSGIYAGVSMI FLSYIGFDSIAANAGEAKDPQKTMPRGILGSLAIAVTLFVAVALVLVGMFHYSNYANNAE PVGWALRTAGHPAVASLVQAIAVIGMFTALIGMMMAGSRLLYSFGRDGMLPKWLGKLNRH QLPNQALLFLTVTGIIIGSLFPFAFLAQLISAGTLIAFMFVTLGIYALRPREGKDIAVPS FKMPFYPVLPALAFLGTLAVFWGLDYQAKLYSLIWFAIGLVVYLAYGARNSRIK >gi|269838497|gb|ACXB01000014.1| GENE 89 85957 - 86721 600 254 aa, chain - ## HITS:1 COG:lin0656 KEGG:ns NR:ns ## COG: lin0656 COG5523 # Protein_GI_number: 16799731 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Listeria innocua # 92 213 48 164 345 69 35.0 6e-12 MNDFTSIKALKKRTLDTYQGNWMAAIKANILPIISAAFTSFMIMTFIGIAVVVFTQTDPA ALRQATNYDQAASVNSAYSGTGMARDFLSMAIATFFMVGIQYGTLDWLRNRTRIPSWGAP FQTFTRKYFTSTLAIFLFEFIFLTLWSFLFVIPAIIKFYSYSQSYLLYKDAQERQLTDQF EFVTFITFSRRLMNGYKARFLLLQLSLLGWFILSVLTFGIGFLWYIPYRNGVYTAFYEDL VEKRGKQVVPEIFA >gi|269838497|gb|ACXB01000014.1| GENE 90 86729 - 87517 700 262 aa, chain - ## HITS:1 COG:no KEGG:PEPE_1306 NR:ns ## KEGG: PEPE_1306 # Name: not_defined # Def: ABC transporter, permease protein # Organism: P.pentosaceus # Pathway: not_defined # 1 262 1 262 262 195 44.0 1e-48 MNKIAAVVKYDLSNYLRLVLIAYAWIIGLMLGVPTIIHVIGKGFTGTAETIGAQLTTLSF GAIFVNLVLIFYCGFLTYERFAFLIQNGVSRRTGWIAKLISLLVLAGVAIIYGLLANMLS LMGDQSKNVSFYWSLYGHFYKNGVLNILSMILTNLIFLLLVAAGGMMLGALFALLNRRQQ RAILVGIPLVLIVIFTIIGRMVSEKVITWERIDNFIRFVMGDTGPMGHLNPVVPSIIMLV LMLACLAISRWLNVRLRLKRGE >gi|269838497|gb|ACXB01000014.1| GENE 91 87510 - 88376 196 288 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 4 241 5 248 305 80 28 9e-14 MKGIEVRQVTKTFDHHLVLNGIGLTLEPNKIYGLLGRNGAGKSTLLNLLVNRIRPDEGEI KLDNELIGDNDRQLGKLFLMSEVDLYPKNIRVKDIFKWSANFYGSFDSELAHSLSKQFGL KESMLFHHLSTGYRTITKLIVALSVPAEYVFLDEPVLGLDANHRELFYNALVESYAEKPR TFVIATHLIEEFAKLIEHVMVMDQGRIVVDDETETVLANAYTISGPVQAVDQYTAGLNVI GSDRLARIKANYVYGPLNDRPIPDEINIDPMDLQTLFINLTNGGETHE >gi|269838497|gb|ACXB01000014.1| GENE 92 88373 - 88744 448 123 aa, chain - ## HITS:1 COG:BH3492 KEGG:ns NR:ns ## COG: BH3492 COG1725 # Protein_GI_number: 15616054 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus halodurans # 1 119 1 119 129 100 42.0 5e-22 MHFNFNSSEPIYLQVAQQIEDAIFTGGFKEGEQIPSTTEISKEFHINPATVLKGMNQLVA RNLLEKHRGVGMFVVPGASKQITLDRQQNFYQKYVVGVVKEAIRLNITETELKKLIEQGY QSL >gi|269838497|gb|ACXB01000014.1| GENE 93 89128 - 89943 517 271 aa, chain - ## HITS:1 COG:SA0771 KEGG:ns NR:ns ## COG: SA0771 COG1464 # Protein_GI_number: 15926499 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface antigen # Organism: Staphylococcus aureus N315 # 5 271 3 273 273 229 46.0 5e-60 MKRNKLIFLVSGLAIILLLAGCGKKSANTQKITIGASAVPHTEILKHIQPALKKEGVELD IKTFQDYVLPNKALASGNIDANYFQHGPFLKEWNEKNHGHLVSAGAVHLEPIAVYSKKYN SLKELPKHAKILVSNNVSDYGRVLQIFRDAGLITLKKGTDLTKAKFSDIAKNPKQLQFKT GYEPKIMPQLLKNKQGSAEVINSNYAVQAHLNPQKDAIATEKSASPYSNIVAIRPDEKNR SAIKKLMKELKSKSTQKWIKKHFKGAVAPVE >gi|269838497|gb|ACXB01000014.1| GENE 94 89954 - 90634 672 226 aa, chain - ## HITS:1 COG:BH3480 KEGG:ns NR:ns ## COG: BH3480 COG2011 # Protein_GI_number: 15616042 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, permease component # Organism: Bacillus halodurans # 13 224 7 218 218 197 55.0 1e-50 MNSSILDFSTVDWNEMGQATWETIWVTLVAVIFTAVLGLLIGLLLFETRNSKNWGIRLIN WLVSFLVNVFRSIPYIILIVILIPVTNVLVHTIVGPTAALPSLILAAAPFFGRLVEIAFR EIDSGVLEAAAAMGAKKSTIIFKVLLPESMPALVSGLTVTAISLVGYTAMAGAIGAGGLG ALAYNNGFLQYNGAIILVATVLIVLFVFALQWTGDWLVKKIDKRLV >gi|269838497|gb|ACXB01000014.1| GENE 95 90624 - 91661 1088 345 aa, chain - ## HITS:1 COG:BS_yusC KEGG:ns NR:ns ## COG: BS_yusC COG1135 # Protein_GI_number: 16080327 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, ATPase component # Organism: Bacillus subtilis # 1 343 1 340 341 379 54.0 1e-105 MIEFKNVSKTFSTKTGPVTAIEDVNLAIPNGQIFGIIGYSGAGKTTLIRMLNGLEKPTTG EVKINDVVINQLTGAALAQQRHKIGMIFQHFNLLWSRTVKANIMFPLEIAGVSRPQREQK VRELIELVGLTGKEDRYPSELSGGQKQRVGIARALANDPEILLSDEATSALDPETTDEVL DLLLEIKRKRKITIVLITHEMHVIRKICDQVAVLDGGKIIEDGAVLDVFKHPQQALTKRF ITAETDPTPQDTEIILDELVDQNPNGRVVRLTFHGDQAKLPIVSEMVHEFPEVALNIIAG NIKQTQEGSIGSLYVQLTGPQSQLDGAVSFLRKLRVETEVVSDEQ >gi|269838497|gb|ACXB01000014.1| GENE 96 92089 - 93303 1229 404 aa, chain - ## HITS:1 COG:L115706 KEGG:ns NR:ns ## COG: L115706 COG0772 # Protein_GI_number: 15672878 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Lactococcus lactis # 15 389 13 387 414 356 50.0 4e-98 MERNDSRVARKDDSSRIDYGIIFPVLMLAIIGLASIYVAATHDTSATSVFRQVFSQLIWY LLGVGIVVVLMQFDADQLWWLAPIAYGAGIVLLILVLFLYSRSYAANTGAKSWFAFGGFT FQPSEVMKPAYILMMARVITVYNHRVKNRTIQSDWRLIGTMALWTLPIPILLLLQHDFGT MLVFIAIFIGLVVVSGVTWRILIPSFVGMVVLGSTTLMLVALPWGQALLQKIGFESYQFA RVDNWLHPSSDTTNSGYQLWQSMKAIGSGQLFGKGFNVSNVNVPVRESDMIFSVIGENFG FIGSIVLIGLYFLLIYKILQVIFDTKNEFYAYVATGVIMMILFHVFENIGMNIGLLPLTG IPLPFVSAGGSALIGNMIGIGLIMSMRYHYYSYSKASIEENADF >gi|269838497|gb|ACXB01000014.1| GENE 97 93319 - 93540 277 73 aa, chain - ## HITS:1 COG:no KEGG:PEPE_1313 NR:ns ## KEGG: PEPE_1313 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 73 1 73 73 95 73.0 7e-19 MSRKEKKFAIEVKETNNNGTTVNEVYVNQRMIGQISQVNDKNWVASNQSGEMRVKSIDEG IQWIIAEFNLHSL >gi|269838497|gb|ACXB01000014.1| GENE 98 93549 - 93788 205 79 aa, chain - ## HITS:1 COG:L122982 KEGG:ns NR:ns ## COG: L122982 COG0759 # Protein_GI_number: 15673654 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 3 71 9 77 88 101 66.0 4e-22 MLVRGYQRVISPLFPPSCRYYPTCSNYMVGALKRFGALQGTLMGIARILRCNPFVRGGYD PVPDQFSLKRNSKNSAERK >gi|269838497|gb|ACXB01000014.1| GENE 99 93820 - 94041 305 73 aa, chain - ## HITS:1 COG:no KEGG:PEPE_1315 NR:ns ## KEGG: PEPE_1315 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 73 2 74 74 82 73.0 6e-15 MGIQAIITLISYLFFILLAFWCIQAIPFHKFMGRFESQAKMLIVLLSIALGYTVASFFLG LITAIQNLTFLVR >gi|269838497|gb|ACXB01000014.1| GENE 100 94249 - 94668 541 139 aa, chain - ## HITS:1 COG:SPy0761 KEGG:ns NR:ns ## COG: SPy0761 COG0355 # Protein_GI_number: 15674809 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) # Organism: Streptococcus pyogenes M1 GAS # 7 138 4 137 138 115 51.0 3e-26 MAENSVLTVSIVTPDGQIYNDDQVTMLVVNTREGELGILPNHVPVIATLAIDEVRIKHDK AEDVVAVNGGFVEFSDNTATIVADTAENQADIDVARAESAKKRAEATIRKAQQAHDNSEL RRAQIHLRRAINRINVSKH >gi|269838497|gb|ACXB01000014.1| GENE 101 94680 - 96089 1498 469 aa, chain - ## HITS:1 COG:SPy0760 KEGG:ns NR:ns ## COG: SPy0760 COG0055 # Protein_GI_number: 15674808 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, beta subunit # Organism: Streptococcus pyogenes M1 GAS # 1 464 1 466 468 704 78.0 0 MSTGKVVQVIGPVIDVEFPLDEEIPTINNALKIKKADGTILVSEVTLELGDGVVRTIAMD GTEGLQRGLEVEDTGDSIKVPVGDETLGRVFNVLGETIDGGKELGPDIKRDPIHRDPPEY DELNPSTEILETGIKVIDLLAPYIRGGKIGLFGGAGVGKTVLIQELIHNIAQEHNGISVF TGVGERTREGNDLYFEMKESGVLERTAMVYGQMNEPPGARMRVALTGLTIAEHFRDVEGQ DVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATEMGQLQERITSTKKGSVTSIQA VYVPADDYTDPAPATTFAHLDATTNLERSLTQQGIYPAVDPLASTSTALDPEIVGEEHYE VASEVQHVLQRYKELQDIISILGMDELSDEEKTVVARARRIQLFLSQDFSVAAQFTGLPG HYVKLEDTIAGFKGILEGKYDDLPEEAFRLVGSIDDVVEKAKKLTATED >gi|269838497|gb|ACXB01000014.1| GENE 102 96113 - 97036 833 307 aa, chain - ## HITS:1 COG:L8105 KEGG:ns NR:ns ## COG: L8105 COG0224 # Protein_GI_number: 15673747 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, gamma subunit # Organism: Lactococcus lactis # 1 306 1 289 289 270 51.0 3e-72 MAISEQDVKRRIDSTKKTSQITTAMQMVSTAKLSQIQKHTVGYQVYAQKVESIVAHLAKS HLMNAGVAGKASSDQAISAADLLVQRPVKKTGYLVITSDRGLVGSYNSSVIKQTNDFMKE HGHDGGDDAIILAVGSTGADFYKNRPQKVGYEYRGVSDVPTFNEVREIVTTVTKMYKDGE FDELYVCYNHFVNRLSNSFHVTKLLPIGGEELVNDGKHETITAEYETEPSPEVLLQEILP QYAESLVYGAILDAKTAEHAASSSAMRTASDNASDLIADLELQYNRARQSAITTEITEIT GGQAALE >gi|269838497|gb|ACXB01000014.1| GENE 103 97074 - 98591 1590 505 aa, chain - ## HITS:1 COG:SPy0758 KEGG:ns NR:ns ## COG: SPy0758 COG0056 # Protein_GI_number: 15674806 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, alpha subunit # Organism: Streptococcus pyogenes M1 GAS # 1 497 1 497 502 776 77.0 0 MSIKAEEISALIKQQLENYQAELNVEETGTVTYVGDGIARAHGLDNALSGELLEFSNGVY GMVQNLESNDVGIVIMGNYDEIHEGDTVKRTGRIMEVPVGDALIGRVVNPLGEPLDGKGA IKTDKTRPVEHKAPGVMQRKSVDQPLQTGIKAIDSLVPIGRGQRELIIGDRKTGKTALAI DTILNQKNEDMICIYVAIGQKESTVRTQVETLRRYGAMDYTIVVSAGPSEPAPLLYLAPY AGAAMGEEFMYNGKHVLIVYDDLSKQADAYRELSLILRRPPGREAYPGDIFYTHSRLLER AAKLSDDLGGGSMTALPFVETKAGDVSAYIPTNVISITDGQVFLDSDYFHSGVRPAIDAG TSVSRVGGDAQIKAMKKVSGTLRLDLASYRELESFAQFGSDLDKATQAKLARGRRTVEVL KQPLHKPLPVEDQVLILYALTHGFLDKVPVDDIQRFQDELFDYVASNNKELTDEIRETKQ LPDTEKMDAAIKAFAEHFQPTKEAK >gi|269838497|gb|ACXB01000014.1| GENE 104 98621 - 99163 628 180 aa, chain - ## HITS:1 COG:BS_atpH KEGG:ns NR:ns ## COG: BS_atpH COG0712 # Protein_GI_number: 16080737 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) # Organism: Bacillus subtilis # 3 180 1 178 181 84 28.0 1e-16 MSLDKTTIAKRYSKALFDVVAEQNQIDQVRDELKQIQQIFDDNEGLGKMLTDKGLKDDQK RSIMALLTKDASKYVGNLIKMAFDYGRMDDLTAIIAEFNRLCDADASVVRAKVISAIPLS DEQLQKMAENFAKRLKVSKVILDSEVDNSIIGGAIIKTDGLIYDGSIQTQINQIRQRLVG >gi|269838497|gb|ACXB01000014.1| GENE 105 99160 - 99681 781 173 aa, chain - ## HITS:1 COG:lin2677 KEGG:ns NR:ns ## COG: lin2677 COG0711 # Protein_GI_number: 16801738 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit b # Organism: Listeria innocua # 12 173 9 170 170 113 41.0 2e-25 MFSHMILGAAQGSTLYVGDMLFYAILFVVLMALIAKFAWGPVNAMLKERADRISNDIESA EQAKKEAQKLAEQRKEALDNSHAEATTIINNAKNSGAKERELIVGNAQAEAKSLKDKAKQ DIEQERADALKSAQDDIASLSIEIASKVIKKELDENSQKELIDSYIEGLGESK >gi|269838497|gb|ACXB01000014.1| GENE 106 99727 - 99939 352 70 aa, chain - ## HITS:1 COG:no KEGG:lp_2369 NR:ns ## KEGG: lp_2369 # Name: atpE # Def: F0F1 ATP synthase subunit C (EC:3.6.3.14) # Organism: L.plantarum # Pathway: Oxidative phosphorylation [PATH:lpl00190]; Metabolic pathways [PATH:lpl01100] # 1 70 1 70 70 80 81.0 2e-14 MGAIAAGIAMFGAAIGGGIGDGIVIAKMLEGMARQPELSGQLRTTMFIGVGLVEAMPILA FVISLLVMNK >gi|269838497|gb|ACXB01000014.1| GENE 107 99972 - 100688 456 238 aa, chain - ## HITS:1 COG:lin2679 KEGG:ns NR:ns ## COG: lin2679 COG0356 # Protein_GI_number: 16801740 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit a # Organism: Listeria innocua # 4 238 3 237 238 203 48.0 3e-52 MGGESISTFQFLGLTFSTANVISGLVAAIIVFAVVFAFSRNLKLKPTGKQNALEWVIDFT NGILRSSVDETETRNFGLYAFTLFLFIFVANQLGLFLQIAWNDVTYLRSPTADPIVTLTL SLITMMIAHYSGVAKFGFKSYFERTYLSPFKVWLPIGVFTEFIDFLTLGLRIFGVIFAGE MLLKMIGGIAFSGGILNMVIAIPLALIWQGFSVFLGSIQAFVFVTLTTVYISHKVEDE >gi|269838497|gb|ACXB01000014.1| GENE 108 100929 - 103532 1750 867 aa, chain - ## HITS:1 COG:L111162 KEGG:ns NR:ns ## COG: L111162 COG0577 # Protein_GI_number: 15673086 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Lactococcus lactis # 3 867 11 896 896 406 29.0 1e-112 MIKLLLRTIKNSLGRFIAISLIIMLGTLIFVGVKATGPALNDSLQATVVKHHLSDLEILS SQGFTETELKTVRQVPGAQVEGVLLQNVLGGKNRDAIALYGYQKNNLQNQLILKQGRLPR NQHEIILDQQARLRGGYKIGDYFNLEKNPQLKYQKYRIVGFADSPQYVDHSTRGASNLGT GKVTYFAYVSHLAFRSSVYSGMQVYFPELQNQKMFSNKYERAVKRKTAQVRRQLTPAVKK RRQSLTKNALTQIEQGKQRLAQSRQKLVAAQQVLKQQGLTVASAMRTLQRQEAKLQQQRR QLDQQAQRIKKALQPSLLYQTRQDLPGFTGYGESSQRIAAIANVFPLFFFLLAGLITFTT VTRMVEEQRGQMGTLKALGYGKGAIVFQYVAYAGLAGISGTAVGAVLGNQLIPRIVLAMY QEYVVEIVKIPVDWRAIALAALLTLLVTIGAATLVSLREVRTSPAALLRPRAPRAAHKIL LERVPGLWRRLRFFQKISYRNLSRAKLRGLMTILGIAGGTALILTGFGIASSIKEAGNQQ FQNVLRYDAVVRARQPKDLTSVQNSLERSAATRATLPVYTAVVQVNQRQKTVRDVTLTVP KNPGQFDQFVRLRDYQSNHSIGLPTRGVVVSPKVARILHVQVGDQIKMRVPNQKTVRVRI AKVVTNYAGNVIYASPSAYQRAFSHAPNFASVLVKTDHQPSARLTKRWMSDNDKILGISL MADQAEMIQKMTKQLGPIVMIFIGLSAILSFVVLYNLNNINIAERLYELSTIKVLGFYNR EVTLYVARESIILAIIGILAGFGLGNLLTGYVIRQAETNNVIFPLTIKPFAYLVAVLLMV IFNLVVVYITHRKLQKIDMVAALKSND >gi|269838497|gb|ACXB01000014.1| GENE 109 103542 - 104243 317 233 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 18 198 17 200 223 126 41 9e-28 MAYIEVQHEFKIYQMGDNQIVANRDVNFTIEQGQIAVILGPSGAGKSTVLNMLGGMDSPT KGSINVAGTDIAQFNDRQLTKYRRNDVGFIFQFYNLIPNLTTTENVELATALVNDGLDPV TVLRDVGLVERLDNFPAQLSGGEQQRLAIARALAKNPKLLLCDEPTGALDYQTGKQILQL LHDASRKFKKTVIIITHNSAIAKMADRVIQINDAQVRSIVDNPQPAPVEEIEW >gi|269838497|gb|ACXB01000014.1| GENE 110 104528 - 104638 66 36 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNRFLFKDFCHSSLTVGYKIQRTYLFSTKQAVTGVT >gi|269838497|gb|ACXB01000014.1| GENE 111 104600 - 105229 730 209 aa, chain - ## HITS:1 COG:SPy0392 KEGG:ns NR:ns ## COG: SPy0392 COG0035 # Protein_GI_number: 15674535 # Func_class: F Nucleotide transport and metabolism # Function: Uracil phosphoribosyltransferase # Organism: Streptococcus pyogenes M1 GAS # 1 209 1 209 209 323 73.0 1e-88 MGKFEVLDHPLIQHKLTLIRDKNCSTKEFREIVNEISTLMAYEVSRDMPLEDVEIETPIG KSIQKQISGKKVAIVPILRAGLGMVDGMAELLPVARIGHIGMYRDEETLKPTEYFVKLPS DISERQVFVVDPMLATGGSAIMAVDALKKRGARDIRFCSLVAAPEGVKALEEAHPDIDIY TAALDEKLNEDGYIVPGLGDAGDRLFGTK >gi|269838497|gb|ACXB01000014.1| GENE 112 105299 - 106531 1280 410 aa, chain - ## HITS:1 COG:L0082 KEGG:ns NR:ns ## COG: L0082 COG0112 # Protein_GI_number: 15672583 # Func_class: E Amino acid transport and metabolism # Function: Glycine/serine hydroxymethyltransferase # Organism: Lactococcus lactis # 2 409 7 415 415 534 66.0 1e-151 MNYQEQDPQLWAAIDREADRQQHNIELIASENIVSAAVRTAQGSVLTNKYAEGYPGRRYY GGCEYIDQVEQLAIDRAKELFGAEYANVQPHSGSQANAAAYAAFIKPGDKILGMDLNAGG HLTHGAKVSFSGTFYESVTYGIDPQTERLDYEQIRQIALKERPQMIVAGASAYSRIIDWQ KFREIADEVGAFLMVDMAHIAGLVAVGLHPSPVGIADVVTTTTHKTLRGPRGGMILSQAK YAKQINFAVFPQNQGGPLEHVIAAKAVALGEALRPEFKDYQAQVIKNAQAMAEVFENEPD LHVVTGGTDNHLMTVDLTQTGHNGKEIQDLLDTVYITLNKEAIPDEKLSPFKTSGIRIGT PAVTTRGFNEADSRKVAELIIRAIHHVDEPEVLAQIKQEVFDLTDQYPLS >gi|269838497|gb|ACXB01000014.1| GENE 113 106544 - 107566 921 340 aa, chain - ## HITS:1 COG:lin2685 KEGG:ns NR:ns ## COG: lin2685 COG0009 # Protein_GI_number: 16801746 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation factor (SUA5) # Organism: Listeria innocua # 6 338 12 345 345 281 47.0 2e-75 MSEIFQSENLADAAAAIQRGDLVAFPTETVYGLGADATNPDAVKKVYQAKGRPSDNPLIV HVTGPAQVAEFAEIDAQSKQLMDTFWPGPLTIILPIKLHALDPVVTGGLTTAAFRNPDTP LTLKLIEQAGVPLVGPSANTSGKPSPTKPAHVMHDLDGKIAGVLDGGETKIGVESTVLDM SGTVPSVLRPGAVTPEDLTPILGEVQTDHHKVGKDEVPKAPGMKYKHYAPNAQVYIVKDA QWSKVADWVAQHAQQPVGVLATSAIFDSTKLIDFDNVDFISLGEDARTASHHLFDGLRTF DGNPQIKVIFAQAFDPTGIGAAYMNRLQKSAGNTYFDEIN >gi|269838497|gb|ACXB01000014.1| GENE 114 107568 - 108425 399 285 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|225874212|ref|YP_002755671.1| ribosomal protein L11 methyltransferase [Acidobacterium capsulatum ATCC 51196] # 28 280 41 289 294 158 40 3e-37 MNNPTYFEALKWASLLIQEHHGDENAPELIMMDRMEWNRTELLVHYRQQLRLDQWQQFQK DVQRAVNGEPVQYITNKANFYGREFYVDSRVLIPRVETEELVEHILNAHPQLNQSLRVLD IGTGSGNIAITLKLERPDWQVTAVDIASEALAVAQQNAHQQEAVVDFRQGSLFDAVKGER FDIIVSNPPYIAENERDVMDQSVIEYEPDKALFAPDDGLFWYKQIGRQLANHLTNAGQLW CEFGYHQGAKLKQYFSELPGVKDVDVLQDLSGHDRILWVRGGSVI >gi|269838497|gb|ACXB01000014.1| GENE 115 108418 - 109497 1226 359 aa, chain - ## HITS:1 COG:L0373 KEGG:ns NR:ns ## COG: L0373 COG0216 # Protein_GI_number: 15672577 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor A # Organism: Lactococcus lactis # 3 356 1 355 357 415 61.0 1e-116 MDIMDKVQAVADRYDELSELLADPEVLADSQRYQELSKEEGEIRETVEKYREYRKVVDSI AENEELQREKLDPEMDSLVKAELADLRDQKEKLEEEIKVLMLPKDPNDDKNIIMEIHGAA GGDEASLFAADLYNMYTRYAESQGWKVQIVDENATDVGGFKEIVLMISGDKVYSKLKYEN GAHRVQRVPVTESAGRVHTSTATVGVMPEAEDVDIEIDPKDIRTDVYRSSGAGGQHINKT SSAVRMTHLPTGIVVAMQDERSQQQNREKAMRILKARVYDYYQSQEEDAYNEERKNAVGT GDRSERIRTYNFPQNRVTDHRIGLTLNKLDRVMNGELNEIIEALILDDQAKKMEALRNE >gi|269838497|gb|ACXB01000014.1| GENE 116 109501 - 110085 524 194 aa, chain - ## HITS:1 COG:SPy1140 KEGG:ns NR:ns ## COG: SPy1140 COG1435 # Protein_GI_number: 15675117 # Func_class: F Nucleotide transport and metabolism # Function: Thymidine kinase # Organism: Streptococcus pyogenes M1 GAS # 1 189 1 189 189 279 69.0 2e-75 MAQLFFHYGAMNSGKSIEILKVAHNYEEQDKQVVLMTSGIDTRTGVGEISSRIGLRRDAF PIFDDTDIYAGIKQAETNPACVLIDEAQFLKKHHVLELAKVVDELGIPVMTFGLKNDFRN ELFEGSKYLLLYADKIVEMKTICWFCKHKALMNLRVHNGKPVYEGEQVQIGGNESYYPVC RRHYFNPLIEEMRN >gi|269838497|gb|ACXB01000014.1| GENE 117 110412 - 111758 1111 448 aa, chain + ## HITS:1 COG:L114717 KEGG:ns NR:ns ## COG: L114717 COG0769 # Protein_GI_number: 15673088 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl tripeptide synthase # Organism: Lactococcus lactis # 1 444 1 444 449 479 52.0 1e-135 MSFRSSIAKMAGKSSYWFLHTFRSGGSSLPGKITTKIDPTILKDLGQNYDVIVITGTNGK TLTTALTVKVLRQKYEHVLTNPTGSNMEQGIVTTFLTDHRSKNGKNIAVLEVDEANVIKV TQYIKPIAFVFTNIFRDQMDRYGEIYTTYQKILDGVKLAPEATIIANGDMPIFNSVDLPN PILYYGFNNQADGEMKADPNTDGVVCPRCEHIIHYKFISYSNQGKYYCPHCGWHRPELNF QLTQITKLTPNYSKFFIDASNFTLHIGGLYNVYNALAAYSVGKFMGVPTSQIQKALNDPD ERVFGRQEQINVDGKELTIVLVKNPVGLNQVIDMVGTETEPFSFVGLLNANYADGIDTSW IWDGNFEKLAQMNIQQYITGGERYKDITFRLKVAGVTDDQLWTYDNLPDAIANIKRLPTT RVYVFATYTAMLQLRKQLISDGYIKEGV >gi|269838497|gb|ACXB01000014.1| GENE 118 111761 - 112465 702 234 aa, chain + ## HITS:1 COG:SPy1034 KEGG:ns NR:ns ## COG: SPy1034 COG3442 # Protein_GI_number: 15675031 # Func_class: R General function prediction only # Function: Predicted glutamine amidotransferase # Organism: Streptococcus pyogenes M1 GAS # 3 220 16 233 263 272 62.0 4e-73 MKYELKVAHLYGDLLNTYGDNGNLLALNYYAKMMDTKLDIQIVSLDDQFVAKDWDIVFFG GGQDYEQTIVSRDLQNKKAELTSYIEDGGPLLAICGGYQLLGHYYVGANGEKISGIGALD HYTLSQDDNRFIGDIVIKNQETGETYHGFENHNGKTYLGKDERPLGKVVTGNGNNGEDES EGVIYKNVYGSYFHGPILTRNGNLAKRILLTALHRRYPDADLSAQEALKIEPTF >gi|269838497|gb|ACXB01000014.1| GENE 119 112549 - 113517 952 322 aa, chain - ## HITS:1 COG:L179409 KEGG:ns NR:ns ## COG: L179409 COG1482 # Protein_GI_number: 15672751 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannose isomerase # Organism: Lactococcus lactis # 1 320 1 315 315 404 63.0 1e-112 MSEPLFLNPVFHEKIWGGDHLKTKFGYDIPSDHIGECWAISAHPHGPAAIANGEFKGMTL DQLWDQHREQFGNAKGEVFPLLTKILDANQDLSVQVHPDDAYAAEHEHELGKTECWYIIS AEPGAELYYGHNAQTREELADWINHGKWDELFRKVPVKAGEFYYVPSGTIHALGKGIMVL ETQQSSDTTYRLYDFDRVDKTTGKKRELHLQQSIDVTNVPHHDPQLNITNEQVGDAQVTT FVQPPVSKYFSVKRVELHDGSAEFNREGLYTLVSVLDGEGTLTVDGQDYPIKKGQHFILP NPVKQWRYQGNLELIVSEPGEE >gi|269838497|gb|ACXB01000014.1| GENE 120 113585 - 114589 786 334 aa, chain - ## HITS:1 COG:L114054 KEGG:ns NR:ns ## COG: L114054 COG1680 # Protein_GI_number: 15674027 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Lactococcus lactis # 9 315 10 298 328 173 35.0 4e-43 MSFEKTRALIAEILERQIIPGVDYTLIQHGKVKYTVTQGTETGAPGARKLTEGRYFDLAS LTKVMGTVPLILRLAAEKQLELDESVSTYLPEIKDTRVTIRHLLTHTSGVTAWIDHRDDL SASQLREAIYAQVSFGTKFNQEIEYNDYNYLLLGFIAEKITHLPVQKAIQQLVLMPWQLT QSTFNPDPFQTVPTGIRNGVLLRGQVHDPKAASLGAHAASAGLFATKADVVKFTQKMLAP QNELFGFNQQQDFLNNQTANPALQRSWGWAFVCRNADQVVLRHSGFTGTFILWDRMTQNA LVLLSNRLYPEPNLEFLDYRQQIYQTFAAEDKLK >gi|269838497|gb|ACXB01000014.1| GENE 121 114934 - 116805 229 623 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 339 597 222 502 563 92 27 1e-17 MAKPTKPVNAPRPGRHGGPGGVIEKPQNFWKSAVRLAKYLSPWMFGFIVVLILAALSTLL QIRAPKVLGEATTEIFKGVMKGAMRMKMGMPVHHFPVNFDKVFQILVTVGILYGLSAAFS FIQQVVMTRVSQKAVAQLRSDFKDKMQKLPISYYDTHSNGDIMSRMTNDMDNISSTLQQS LTQLVTSALQFVGVLYMMLTISWKLTLVAVATVPLSLIVVTIVAPKSQRYFKSQQKHLGL MNDQVEETYAGHTVIKTYNHEQKAIEDFEKENVKYYRSAWKAQFISGLIMPLMNFVKNLG YLMVAVLGGVQVAHGRLSLGNVQAFLQYTQQFSQPITQVANIANTLQMTMASAERVFEVL DQPEMEETHTDVAKVDTSAKVIIDDVDFRYVPDKPLIRNFNLRVEPGEMVAIVGPTGAGK TTIINLLERFYDVNSGTIYLDGEDTRNMSRNELRKHIAMVLQDTWLFTGTIRENIKYGRE GATDEEMYAAAKAAHADGFIRQLPDGYDTVLNEAASNISQGQRQLLTIARAFLADPDILI LDEATSSVDTRTEVLIQKAMNRLLKNRTSFVVAHRLSTIRNAQNIVVMNHGQIVETGNHD GLMAQNGFYADLYNSQFASGEVI >gi|269838497|gb|ACXB01000014.1| GENE 122 116798 - 118537 196 579 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 339 578 28 272 329 80 27 9e-14 MWKILKKRLSWGAVLIGTVFLVVQIVGDLILPNITSDIINNGVAKNNIDYIWNSGFKMLG VSLIGLIGAAVNVYFAATQAQKVGNKLRSSLFKKISFMSNYEFERFGEASLITRTTNDVI QIQNVVVMILRMMLMSPIMLVGAGFMAYQKQSELTGVFLVALPVLAIFVGLVMYFAVPLF KGLQKKIDRINLVFREGLTGVRVIRAFNQDQFEQDRFADANHDYMRTGIKVFTIVSFMFP IMTLIMSGTNIGIVWYGAHLIADRTMEVGNLVAFMTYATQILMSFMMLSMVFVMIPRASA SAARINEVLETQNSVNDQAKTTDLPAQPATTLAYKNVEFRYPGAERLSIDNANFQAKAGD TVAIIGGTGSGKTTLISLLPRLFDVTAGKVELDGVDIRQLSQHVLHDQIAFAQQKAVLFK GTIRENMRYGNPKATDEEIWHALEVAQATEFISRDGDGLDTFVEQNGDNFSGGQKQRLSI ARTLVKKAQVYVFDDSFSALDFKTDANLRKALREDPEIKKGIVIIVAQRIATVADADLIL VLDGGKVVGQGTHAELKANNETYREIIDSQIKKGDQANG >gi|269838497|gb|ACXB01000014.1| GENE 123 118541 - 119197 536 218 aa, chain - ## HITS:1 COG:L53789 KEGG:ns NR:ns ## COG: L53789 COG1309 # Protein_GI_number: 15672643 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Lactococcus lactis # 1 129 1 139 189 77 34.0 1e-14 MPKQTFFNLKDEKQRRIIAAARREFSHHPLYESSINNIIKEAKIPRGSFYQYFEDIADLY GYYFSLILEDIQARLIDEVHQNHGDIFAAVRKYAGVFLEEILAGEHRDFYRNFFLGANAS IRARENHHPGTGFNVFHSKRMRELRSQLREVVDWDQLKVTSQKDQAMIQQLIMMIFFHAF ASYFIHAGETDEEPATVQKEIEHNLDWLEYGVRRTEEK >gi|269838497|gb|ACXB01000014.1| GENE 124 119308 - 119649 374 113 aa, chain + ## HITS:1 COG:no KEGG:PEPE_1339 NR:ns ## KEGG: PEPE_1339 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 113 1 113 113 172 76.0 3e-42 MATNSDSLYNVLYRIDNKPEMAQINPLGYRNVLNMTFPDSTPVANPEVYFPDNSLLVDRF ADDFVAKNGALLGRFLAKTEALDHGLDSVWVTTSHIVDQHEYMIELTFESSPM >gi|269838497|gb|ACXB01000014.1| GENE 125 119663 - 120127 456 154 aa, chain + ## HITS:1 COG:SMc01218 KEGG:ns NR:ns ## COG: SMc01218 COG0782 # Protein_GI_number: 15965326 # Func_class: K Transcription # Function: Transcription elongation factor # Organism: Sinorhizobium meliloti # 6 153 5 155 158 100 41.0 1e-21 MQPQFVPMTKTGYQKIQQEIADLKKTRPGLIKALADARALGDLSENAEYSAAKRDLRRME GRLRYLERQINYSKIVENTDRTKIDLGSNVTLRFLDDDFTVTYEIVGKHEADVAQQKVSY QSPLGAALLHHHLHDVVTVNAPDEQYQVEILAIN >gi|269838497|gb|ACXB01000014.1| GENE 126 120457 - 121422 836 321 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0917 NR:ns ## KEGG: PEPE_0917 # Name: not_defined # Def: beta-lactamase class A # Organism: P.pentosaceus # Pathway: not_defined # 61 314 71 316 317 269 54.0 1e-70 MNQNWQKPSPRLNWTRFYSMVTILVLITSVVGLEMLRVSAHQEVAQSQSPRGPVNKKGSA KHQPATNPQVPMKKAVNKATAKGFAEQLRPFLANTNAKVAVAVYSKRDHQLYEATNTKQT TFPSASIIKTDFLVELLHQRHQKASALTTGEQNATVQMIENSDNDAATSIYNDIGSARGL GQLFNNLKMTNSTALASGWALTPTTPRDQIKVLNKIFYENGYISNKSKAYTKNLMANVAD DQDWGISAGSEYAWLKNGWKQMPNGHWIVNSVGYLGKGENSCTIAIMSEDNPSLESGEAL LEKLSQQVGVQLKIAGAERKA >gi|269838497|gb|ACXB01000014.1| GENE 127 122060 - 122347 254 95 aa, chain - ## HITS:1 COG:SP1471 KEGG:ns NR:ns ## COG: SP1471 COG0431 # Protein_GI_number: 15901321 # Func_class: R General function prediction only # Function: Predicted flavoprotein # Organism: Streptococcus pneumoniae TIGR4 # 4 77 86 158 201 74 51.0 5e-14 MKQLVAIWGLTHGIHRILDKSLIITAAAYGNLGASRAYTQLRKILGASELKARILPSTEF LLENSPQVFDERGDLIDQTKNVQQLNHAHQAMKQN >gi|269838497|gb|ACXB01000014.1| GENE 128 122736 - 123251 456 171 aa, chain + ## HITS:1 COG:SP0723 KEGG:ns NR:ns ## COG: SP0723 COG4732 # Protein_GI_number: 15900620 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 8 166 10 168 174 156 54.0 2e-38 MQNKTTLRLAIAALLIAIDVVTSPLFRIEGMAPMSSVLNVIIGCLVGPFYAFAITLMTGI IRMLILGIPPLALTGAVFGGVLSALFYRWTNRVGGAWLGEIIGTGIIGSLLSYPVMILFT GSSNGLYWFIYTPRFLAATLFGGLVGTILTKILLKSPRFLRYQQLFSKLKL >gi|269838497|gb|ACXB01000014.1| GENE 129 123318 - 124670 1534 450 aa, chain - ## HITS:1 COG:SP2070 KEGG:ns NR:ns ## COG: SP2070 COG0166 # Protein_GI_number: 15901889 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose-6-phosphate isomerase # Organism: Streptococcus pneumoniae TIGR4 # 1 449 1 449 449 620 69.0 1e-177 MAHISFDSSNVADFVHENELAEIRPMVTAADELVRKGTGAGSDFRGWLDLPSNYDKEEFA RIKKAAEKIREDSEVFVAIGIGGSYLGARAAIDFLNNTFYNMLTKEQRNGAPQVIFAGNS ISSTYLADVLNLIGDRDFSINVISKSGTTTEPAIAFRVLKEKLIAKYGEEEAKKRIYATT DRAKGALKTEADAEGYEEFVVPDDIGGRFSVLSAVGLLPIAVAGGDIDQLMKGAEDASKE YTDADVNKNDAYKYAALRNILYRKGYTTELLENYEPTLQYFGEWWKQLMGESEGKDQKGI YPSSANFSTDLHSLGQYIQEGRRDLMETVINVEKPNHDIDIPKEAENLDGLRYLEGRTMD EVNKKAYQGVTLAHNDGGVPVMTLNIPDQTAYTLGYMIYFFEAAVAVSGYLNGINPFNQP GVEAYKSNMFALLGKPGYEDKTEELNARLK >gi|269838497|gb|ACXB01000014.1| GENE 130 124939 - 125808 948 289 aa, chain - ## HITS:1 COG:SPy2205 KEGG:ns NR:ns ## COG: SPy2205 COG4975 # Protein_GI_number: 15675938 # Func_class: G Carbohydrate transport and metabolism # Function: Putative glucose uptake permease # Organism: Streptococcus pyogenes M1 GAS # 13 289 4 276 277 202 44.0 5e-52 MNILLALVPAIMWGSIGLVSGRLGGSASQQTLGMTMGAVIFSLVTLVIYQPTLNGKIWIA GLISGLFWAVGQFNQFSSMKHIGVSKTVPISTGLQLAGNALAGVLIWHEWTSGNMIMVGT IAVIALIVGAALTSLKDKSDSTTENDDENMPAGIQALTISTIGYIGYTVIVRFANVDAKA IIFPQAVGMLLGAFLFVFFAKETDQIAKKPTFLNITTGLIWGIGNIFMFLAIPSVGLAIS YSLAQAGIVISTFGSIWLLGERKTHREMQFVIIGSILIIIGETLLATLK >gi|269838497|gb|ACXB01000014.1| GENE 131 126094 - 126957 1214 287 aa, chain + ## HITS:1 COG:SP0605 KEGG:ns NR:ns ## COG: SP0605 COG0191 # Protein_GI_number: 15900513 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose/tagatose bisphosphate aldolase # Organism: Streptococcus pneumoniae TIGR4 # 1 283 1 289 293 323 59.0 3e-88 MSFINGTETFAAARKGHYAVGAFNTNNLEWTRAILAAGQETHTPILIQSSMGAAKYMGGY KAVKNLVESEVESMGITVPVIMHLDHGNYEAAKEAIAAGYSSVMFDGHDLDFEDNLVKTK EIVALAHAQGISVEAEVGSIGGEEDGIVGAGELADVEEAKTLAATGVDYLAVGIGNIHGV YPENWKGLNFDRLQELADAIDTPLVLHGGSGIPKEQIVKAISMGISKVNVNTEQQIAWSE AVRKYYEEDNDKKPKGFDPRKVLASGTEAIKNTVKERIEWFNTPSMW >gi|269838497|gb|ACXB01000014.1| GENE 132 127155 - 128597 1232 480 aa, chain - ## HITS:1 COG:BS_yclK KEGG:ns NR:ns ## COG: BS_yclK COG0642 # Protein_GI_number: 16077444 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Bacillus subtilis # 1 480 4 473 473 301 36.0 2e-81 MKLFFQQMMAFLAVTVATLLIVGLVFIQFTRDSVYRTKWHSLQEYADSIFQQSVVLDPQD SSVTTVRVDQLMGMERLLNNQHIHFTIYTENGERVSYPNDNTATQISKKQRKELNKGNIL RQESRMAVGQVKHRITMTELKKPYFDRQGKLVCVIAVGSPLARVQADIQQVQKNLLVTFG LAILVAIVASYFLSRYMVRRIQQIRQAAHRVTEGDFEVQLDPGRQDEIGELSADFNLMTK SLKESNDEIKRQEERRRAFMADAAHEMRTPLTTINGLLEGLEYDAIPEDSKEESIRLMQR ETKRLIRLVNDNLDYERIRTNKIKLDCQMVNLKQAVLRVVEQLGKKAEKENDQLIVEMNS DVVVYADPDRLIQILFNIVQNGIQFTQNGQITVRAQNASDGTNIQISDNGIGMTEDQIKN IWERYYKADASRIQTKGESGLGMAIVHELVQIHGGKIEVSSAPGRGTTFKLHFPKASEDQ >gi|269838497|gb|ACXB01000014.1| GENE 133 128601 - 129323 719 240 aa, chain - ## HITS:1 COG:lin1542 KEGG:ns NR:ns ## COG: lin1542 COG0745 # Protein_GI_number: 16800610 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Listeria innocua # 1 236 1 228 228 241 54.0 1e-63 MQILMIEDNKSVSDMMGMFFKKEKWKVTFAYDGVKALEIFKADPQQWDIVLLDLNLPGKD GMEVAAELRRTSRTVPLIMLTARDSESDQVLGLEMGADEYITKPFSPITLIARIKALHRR VLMNKHNSNAEQQAGKFDVRTAHLKISTATREVYLDGKLISDLTPKEFDLLKTLAQKPMQ VFSREQLLQMVWDYEYYGDERTVDAHIKKLRQKLEAVGPQVVQTVWGVGYKFDDSKIDEG >gi|269838497|gb|ACXB01000014.1| GENE 134 129983 - 130525 416 180 aa, chain - ## HITS:1 COG:no KEGG:LCABL_22770 NR:ns ## KEGG: LCABL_22770 # Name: not_defined # Def: hypothetical protein # Organism: L.casei_BL23 # Pathway: not_defined # 1 173 2 174 188 169 47.0 6e-41 MDKEYGVKLAYYESLLENSYAEAVAQLKEKYGMVEDDYFREKSYERFLNGKIKFPEKGNF SKTALGLYCHHINENHHEHLADLEWIKKYQYSFELQQKEQLVYCDLFEHLLLQALIMKET GNQFGETEFRVVLAPDVINFYSRKLEPKTKWKKVIKQRAFLPSEETEQLLDKVMGFLGTV >gi|269838497|gb|ACXB01000014.1| GENE 135 130728 - 131408 761 226 aa, chain - ## HITS:1 COG:no KEGG:PEPE_1355 NR:ns ## KEGG: PEPE_1355 # Name: not_defined # Def: aggregation promoting factor-like surface protein # Organism: P.pentosaceus # Pathway: not_defined # 1 226 1 225 225 207 70.0 2e-52 MSIKSKISKMSIALLSGAAIGAAMITTSGSASADEIYTVKSGDTLSEISYSFGLNGDYNT IAKANNIADVNVIYVGQKLKITNDGDIKQATNKDVQQLPEVKQNTNAAGASQAQTTQTQA QTQTSQAPVQKAAPVRQASTTNNNRSYSSNATGNEAAAKAWIAARESGGSYTARNGQYVG KYQLSSSYLNGDYSAANQERVADNYVKSRYGSWSAAKNAWVSQGWY >gi|269838497|gb|ACXB01000014.1| GENE 136 131646 - 132290 723 214 aa, chain - ## HITS:1 COG:no KEGG:PEPE_1356 NR:ns ## KEGG: PEPE_1356 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 214 1 228 228 195 66.0 1e-48 MSIKSKFSKLSIALLAGAAIGATAITSGSANADEIYTVKSGDTLSEISYAFNLNGNYDAI AQANHIKDVNFITVGQKLVIKDNGSIQKATKSEIKSLPEVDKDTNAAAATKQATPAKTAT PKATSTKTASYSGNSSVSSVANEMASRTGVSAAKWQQIIMRESGGNANVSNASSGAYGLF QLLGHGEHAGMSVAEQINMATNVYNAQGLSAWGE >gi|269838497|gb|ACXB01000014.1| GENE 137 132755 - 133744 614 329 aa, chain - ## HITS:1 COG:SA0610 KEGG:ns NR:ns ## COG: SA0610 COG0657 # Protein_GI_number: 15926332 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Staphylococcus aureus N315 # 38 310 37 302 347 154 34.0 2e-37 MKLFKRIIKYLLILIGGAGLAIAIAINVSPRPFVFFLNHAAKDEAAIRPRAYQGYRDQIS IKKDVRYSSQSAKNTMDIFYKKDNRTKPTIIWAHGGAFVAGDKSGTTYWATKMAANGYNV VSINYTLAPDRQYPTQVNQMREAIQFVHRNYAKQLNVQKVVVGGDSAGAHIASQVIAAQC NHQLATAINYHHLRDVKIVGGLLYCGPYDIKQMVNKKHVDTMTKLFVNQVGWAYLGDKDW KSSAKGRLVSTVNYVNKQFPPIFITDGNNGSFEAQGKELYHKLREEGVATQALFFGKGRK VNHEYQFDLDSRAGKECFENTQDFLKNLD >gi|269838497|gb|ACXB01000014.1| GENE 138 134063 - 135415 1470 450 aa, chain - ## HITS:1 COG:BS_yojA KEGG:ns NR:ns ## COG: BS_yojA COG2610 # Protein_GI_number: 16079010 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism # Function: H+/gluconate symporter and related permeases # Organism: Bacillus subtilis # 1 450 1 444 444 443 58.0 1e-124 MEFIVLIVGIILLLTLIIKFKFNTYVSLIVTSVVVGLGLGMPASKIADTIQNGIGSQLGE LALVFGFGAMLGRLVANAGGAYRIAHTLINKFGRRFLQMAVVVASFIIGIALFFEVGIVL LVPIVFAIATEAGVSVLALGIPMATALSVTHGFLPPHPAPTAIATVLNANAGKVLLYGII VAIPTVYVAGILFTKIARKMVPSAFERTGNLKALGPQKEFKLSETPSFGMAVLTSLFPVI LMAITTIYDLVVHNGVTPTHPNFLDNLISFIGSPSIAMLISLLFAIWSMGYHRNIPSGEI MNTLEDAVKSIAMLLLVIGGGGAFKQVLIDGGVGDAIKTAFASSSISPLILGWLIAVILR VALGSATVSALTAAGLVLPLMQGAGIDPALMVLSVGAGSLAASHVNDSGFWMFKEYFDLT VKETLLTWTMLETVISVVGLAGVLVLSLVV >gi|269838497|gb|ACXB01000014.1| GENE 139 135597 - 137159 1823 520 aa, chain - ## HITS:1 COG:SA2294 KEGG:ns NR:ns ## COG: SA2294 COG1070 # Protein_GI_number: 15928085 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar (pentulose and hexulose) kinases # Organism: Staphylococcus aureus N315 # 1 509 1 510 517 582 53.0 1e-166 MKYMIGVDLGTTSTKVVLFDLKGKSIAYANNPYPLYQETPDMAEEDPEEIFDAVISGLTE VMRKSRVAADQIAGVSFSSAMHSLILMDQNDQPLTRVITWADNRASREAEELKENGLGAK LYARTGVPTHPMSPMVKLLWLKKDQPELFKKAKHFIGIKDYVLFRLYGKYVQDYSLANAT GLFNIFEKDWDSLALETVGISREQLPELVTPEEQLVGMDRSYAEVTGINPDTPFILGASD GTLSNLGVNAIDPGVLAVTIGTSGAVRVVVDHPVVDPRGRLFTYYLDDNKWVVGGPVNNG GIVFRWVRDQLFSPEKITAEQMQVNSYEILTDIAAKIPAGADGLLFHPYLGGERAPIWDA NARGSFFGLTRQHTRAHMVRAALEGIVYNLYMVMLMIEGVAGKPKSIQATGGFARSELWR QMLADIFEQDVNIPESFESSALGAVVIGMKSLGIIDDLSAVKSMVGVTHQHHPNQENFGV YRELLPIWIRLTDELAGEYDSIADFQRKHPNPHARIAEED >gi|269838497|gb|ACXB01000014.1| GENE 140 137172 - 138074 1102 300 aa, chain - ## HITS:1 COG:L53699 KEGG:ns NR:ns ## COG: L53699 COG1023 # Protein_GI_number: 15674167 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted 6-phosphogluconate dehydrogenase # Organism: Lactococcus lactis # 1 298 2 302 302 374 63.0 1e-103 MEIGLIGLGKMGLNLAKNMRDHQIEVVAFDLFAEARQAATKAQIKTVTDLQSLVKGLTQP RIVWSMLPAGKPTDDTIKELSELLDEDDVVIDGGNSFYQDSIRHAEILKEQGIHFFDVGT SGGKAGARQNGNFMIGGPQPIFARIEPLFKAIAAEDGYLYTGKAGSGHYLKMVHNGIEYG MMQAIGEGFEVLSESQFDYDNEAVAKVWNHGSVVRSWLMELAQDAFSKDANLDEIKGVMH SSGEGAWTVQEALRLRVPTPVISSALMMRYRSEKDDTMTGKVVAALRNEFGGHAVDHQEK >gi|269838497|gb|ACXB01000014.1| GENE 141 138225 - 139067 889 280 aa, chain + ## HITS:1 COG:L54944 KEGG:ns NR:ns ## COG: L54944 COG1737 # Protein_GI_number: 15674168 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Lactococcus lactis # 7 257 8 260 282 193 42.0 3e-49 MSNFALRIQACQSNFSDKERQLATFLLKNQSQISHATISELSQKTAISTATISRFAKNLG FKNFQELKLSLAQTENSDNLFAEISPSDSPVTVAEKVFAANADALKATVKSLSEADLATC VQLLLDAQQVGIFGLGASNIVALDGYHKFLRTPLDVVYAHDFHMQIMAATRLTAKDVMLL ISHSGEDRDAIALANLALQHQVPLILITSSANATLAKMADVTLISVAEEALYRSEALHAL IAQMSIMDALFMSVAIKTNHKIALKIHQEIKKTRKNDPLF >gi|269838497|gb|ACXB01000014.1| GENE 142 139302 - 139538 329 78 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227508470|ref|ZP_03938519.1| ## NR: gi|227508470|ref|ZP_03938519.1| hypothetical protein HMPREF0496_0633 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 60 1 60 80 67 61.0 3e-10 MAEKKIKINPNEFALAVISGSKLDNPDDVRASKDALKRYLTAYMLIEEFNELEASQFKFF KKADREMLVKALEGLRLD >gi|269838497|gb|ACXB01000014.1| GENE 143 139664 - 140512 912 282 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0068 NR:ns ## KEGG: PEPE_0068 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 278 1 278 282 377 69.0 1e-103 MNYELVSILRPGTDNWKSQKERAEKNNSTLITLLPEPFFVRLKKEEYPKMINIVDYVTKR TYDENNSLFFDKVPTVDGAEIFMNHDGVITLIKDGVTFGEMRTFPRSRRLVQDIKFFNED GTRDMVEEYTFDGKLFSNLFYYKDKVQEIDFFDDNGDVRLRFYFYEGEINFITVENPKTK KIIEKYDNMAQFQAAQVAKIVKPEDEVGITYLGVELDALKNTQSKNTLYLEEPAFEGGQV KGNLKLIMENHIDYIQRVVVSSEDYQKMLDLGLDVSKVEPKQ >gi|269838497|gb|ACXB01000014.1| GENE 144 140502 - 141947 1226 481 aa, chain - ## HITS:1 COG:SP1758 KEGG:ns NR:ns ## COG: SP1758 COG0438 # Protein_GI_number: 15901589 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 5 481 6 500 503 199 31.0 1e-50 MNFFVNEAMGIGNSGVEHAQFYRAKRFDQANLDYKFIFMALVDNLHEAMDKWDLRDDQVI NIWEYFVHGDDYALNGLKKRTKLSSETVIDGTNTFRMENKVTSAGVRIVRHYVKYPNPKK NPALLVSVDRVELFDTETNLRKVAFEFLANPHDDRSFVIKNIHLYNQPEELFFPNLVQLR RYFFHQIERLYSGKNVFVLDRGEMNEVALMDEDVPNVNRKLVEIVHADHLADRDDPKAPF WNNYYEYSLSHLDRIDRIVVSTELQRKDLLVDFPNKEKEIVTIPVGGIDDETKQIKSTPH KGFKLVTISRLASEKHIDLVVKAVANLHKQGHKVSLDIYGAGEEEKKLKELIEKVQAKKY IKLRGLTHHADKVYPKYDAFVSASFSEGFGLTYIEALNAGLPVVTFAARFGSLELIQDGK NGYLMTFKREDHEFDVSQLEKGIQKLMERDISEMKDDIYKSVDNYRDHVIADKWRNLINE L >gi|269838497|gb|ACXB01000014.1| GENE 145 141987 - 142796 540 269 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0066 NR:ns ## KEGG: PEPE_0066 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 268 1 268 272 239 43.0 6e-62 MKSSYFVIRWPVHMNDTYSYGSVINYQNGKIYFKNERMSPGERIHTWKSQVVFDKLDTGY SQLPLLKRKAKYQIITKAIIAPENSVQIQLDFFDVKNEIIDGPLTIDLDGEFEVPEEMDH YQLSLVNLNNRSLEFEDLIIRPVESTFEIATIDGNMNVICLWDRRDHFFEKVEVYLRRRL LYSGSYLGKQNVLRIFVEYDSRANWQKGQLHDAIAHATKSLEKVVKERKLAFDALSPDTI LLSEPEESLIKLENYTTMELAKILHFYRR >gi|269838497|gb|ACXB01000014.1| GENE 146 142786 - 144384 815 532 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0065 NR:ns ## KEGG: PEPE_0065 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 3 531 2 527 527 642 58.0 0 MSKGKIIHLGPEIEGLAELIEGKFDIFDVPFEFVDQPIGEEKNKLLIKGELNLVFRHDLF FITQSEYLQSGQSSFLRQLPANNIIIDSRLQLSEEAKQAFFLKNVQFIDFESEQDLAKQL NEEFYNDQLGYKYKFDNIQFDSFFKGTVKQLGHNYLEIIDNDIKDYQRVANWGGPLGVAK NSIWEIRTEFKRNTPSTNVRLRVSLISAFTSEIYYSTEVDNDDLNNLIPLKVDHNGAFIL VELLVKGQNIDLTMGAITLNESRGGRGTLLIGEDVEIDDEAMGEPLYHYFDPGDFKPPLM VYFSGFRFNPGVEGMFMMRGLKGPTLLIEDFRILGGSFYVGGEKLESQIIKLIQTTLKKL GFKPNELILSGLSMGTFASLYYSSFLNPDWVIVGKPLTSLGDIAANERINRPGGFPTSLD VVLRLTGGIADENIKQANDIFWGSFTKHDHSKTNFVIVYMKDDDYDGDAFEKLERFLRKH SPTSRIIHKGFTGRHNDQSGALSSWFINQYRNILETNYGRDFSPQEDDEDEE >gi|269838497|gb|ACXB01000014.1| GENE 147 144371 - 144514 73 47 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0064 NR:ns ## KEGG: PEPE_0064 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 46 505 550 550 69 65.0 3e-11 MTDGLDFYLGKLGNWNIALVNTAKYMEQLEFGRQSDWWERRMRYEQR >gi|269838497|gb|ACXB01000014.1| GENE 148 144511 - 146037 776 508 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0064 NR:ns ## KEGG: PEPE_0064 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 479 1 475 550 477 47.0 1e-133 MFYIAPAWTNNIEELNRDLLKNVMSLLVDGDKPVKLLVLNFLPNLRYLLHVNGLTNLPFW NLWDAILNIERTDGMPLGPESLEWPADIRTAQGTRSVVGYRGNKLAARVIGNEQGFIQAV EYLDDDIYHVDIYDDRGFKAATKYFKDDHLIKQIWFNEVGQCILRYEPQAEVTVKILSNY SNFDRAEYDSLDDLLMEFINKKFANEFDERTDGVIASSNKRMRSLMIKMQKQIPITYLLD HPGKISSVDIQELVPQMEGCSSFVIPNYAIFEQFQLEVNELCRAHLDLGYPYGADMRLGN SNEERKLIIYWNIGDTNDDQSVRGVSDELLDYYLKHESAGLIISTLNNEMADQVFSIVLQ KLLNHYDFLDGEKDWKIINKIMFNENNGKEMQKLIYRVKLRLWKAWEIKHPIKDGEVTIT VDEIPESQKIDWEQFVEDMSNVLFRVGSRDYQIFADLARARIVVDMGEPYDTRTQFNAIV LEYHKLLRLRVRSLSIARMGGLLKKGTV >gi|269838497|gb|ACXB01000014.1| GENE 149 146057 - 146977 289 306 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163796899|ref|ZP_02190856.1| 30S ribosomal protein S11 [alpha proteobacterium BAL199] # 34 304 160 434 447 115 29 7e-32 MDNINNCNIANSAIYFCNQKNITLAGDKIFGFDFNLVVSFMILVAGAMIVAWMSDMTAKF GVGGAGVLIMPGIITNLPLMVFRGPGLGTNQVTSFSTNLWIALGISVLVVFVATVFFNKA ELRIPLQRPNVQNDFSESYLPIRFLTSGSMPFMFTTTVFMIPSYIANFSPDSGFSRFTQA YINFNNPVGITIYCGVVVFLSYAFSFMNLQTERQAENLKKSGDYIFGITPGKDTQRYLNH HVVRLSTAANGYFLVVVATPLIIGLYVPGVTNFTFAYASILILVTIMDTTLDQLKTMYLR TQYDLL >gi|269838497|gb|ACXB01000014.1| GENE 150 146869 - 147291 328 140 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0063 NR:ns ## KEGG: PEPE_0063 # Name: not_defined # Def: protein translocase subunit SecY/sec61 alpha # Organism: P.pentosaceus # Pathway: Protein export [PATH:ppe03060]; Bacterial secretion system [PATH:ppe03070] # 1 125 1 125 410 161 64.0 6e-39 MRKRSEKNELIASIMFTLFMIVLMELGRQIAIPALDSDLSRKALNASPLLRNVTMLTGGQ SRFPSLFSIGLGPYMTGMILFQAIQLINVDAMSKISDQKRGFIQRWITLIIAILQTLQFI FAIKKILLSQVTKFLGLILI >gi|269838497|gb|ACXB01000014.1| GENE 151 147288 - 149657 2173 789 aa, chain - ## HITS:1 COG:SP1759 KEGG:ns NR:ns ## COG: SP1759 COG0653 # Protein_GI_number: 15901590 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecA (ATPase, RNA helicase) # Organism: Streptococcus pneumoniae TIGR4 # 7 789 8 790 790 663 44.0 0 MRFDFNDFRLRKYSKITKKILALDKEYQQLTDEQLQAKTILFREKLAEGASLESILVEAY ATIREADYRILGLKPFENQVLGGVILHYGMVAQMNTGEGKTLTATMPMYLNGLTGPGNFL VTVNGYLANRDAEEIGKVYHWMGLTSAAGVSPDEEELDMQAIYNNDIVYTTNSALGFDYL TDNLVENATDKKLNDLNFALVDEVDSVLLDAAQTPLVISGSPRVQSNLFNSTDRIVKSLQ KDKDYEFSEDLTSVWFTKEGIKHLEDYLGITNLVSKRWSDLYRHLVLALQANYTIKRNQD YVVVDDEVLLLDSENGRALTGMKRESGIHQAMEAKEEVPLTEQTRAMASITLQNFFKMFK KLSGMTGTAVTSAREFMDVYNLPVLKVPTHKPNIRVDRPDIVYATMDEKIEATVKLVKKA YEVQRPVLLKTGSLSLSRLYSRVLLKNGIVHNVLNAQSESKEAMIVADAGQAGAITVATS MAGRGTDIKLGPGVKEKGGLLVIGTERMNSRRVDDQLRGRAGRQGDPGESIFLVSLEDKV VIENAPDWVDKYRMRLAQALKEGKRKYGEPLRGRRAKNIVERAQQAADTKAESARKSSVK MDDILRIQREMIYDFRDYVMANGDLGEITQRIWDDFFKLYSSGKGITRDKLSDFIINNLD YNYSDEQFDSKILEDPEQVEQYVLKVAKQKWEDQKLILDNEFKQNYLKRLSILKALDVAW IEQVDNLSQLKTVVSSRSTGQHNPIFEYEKEAMNSFRQMRKAFWQNTIKYMLLSDLIVGK NESIRVEFP >gi|269838497|gb|ACXB01000014.1| GENE 152 150151 - 150240 62 29 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLIKISFLFYAFFLKFETEDLNHGCNIKG >gi|269838497|gb|ACXB01000014.1| GENE 153 150352 - 151155 395 267 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0070 NR:ns ## KEGG: PEPE_0070 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 266 1 264 265 187 36.0 3e-46 MNKKTVKELICDRYWEYRHYTEKNDSVAIFLKKDSLRAYFLIQFGQDGRILFPGAVPFKP NEYSMWDFDEEEQKIVILDKNGNENQRVDIPIEWINGIQRIFLTGEAKGDALVCEKSTNK RKSHPYFLGGTQVFITSRKFVTLDLIHDLSRLGFNIKISNHQVASYNFFSDTFEYIIQHP QLQKIIISNTGKLEVKLPQNHQLLISKDCGPSSIAYLTGNRAPILELLSSVLMENNQHLL NSEDNRAEEEIFQAVLQTQFSDRYELG >gi|269838497|gb|ACXB01000014.1| GENE 154 151167 - 151901 433 244 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0069 NR:ns ## KEGG: PEPE_0069 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 244 1 243 243 327 66.0 2e-88 MKVEPNVVISEFIVNMTDDLYHKDNSKIDISEKVKKQADSLANFKVPYYVLTNGPSQENL EKGLTITHVDLFEHYPDLTLYFYRILMAFDFLKDHPEIEKAALTDAGDVTMLNYPFNSVR EGILYIGDETSSLFNTAIIINSDAPTYMKDFIWENNNLPILNLGIMVGTRDVLIEYLGIM VKLITEAEVKIKQGDDSYRLGKFEMLISNYVAYRYFSNRLIHGREVSTIFNGHQEISSAW FKHK >gi|269838497|gb|ACXB01000014.1| GENE 155 152143 - 152505 398 120 aa, chain - ## HITS:1 COG:L83104 KEGG:ns NR:ns ## COG: L83104 COG4272 # Protein_GI_number: 15674199 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 5 120 8 124 125 97 54.0 6e-21 MNAKQKEMNHVELLIGRILQVGVYISAIVIICGIGLWLVKNGSGYAGALPTRLGIIFQGA MQLKPYAVLMLGIFLLILTPVLRVVVSIYAFAKEGDRLYVTITTIVLIILIIGMTIGYQG >gi|269838497|gb|ACXB01000014.1| GENE 156 152506 - 153351 964 281 aa, chain - ## HITS:1 COG:L83481 KEGG:ns NR:ns ## COG: L83481 COG0730 # Protein_GI_number: 15674200 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Lactococcus lactis # 12 281 14 283 283 288 65.0 1e-77 MASHLIILLLVGLLAGVFGAILGIGGGMIITPVLTIGMGLDIKYAIGASIIAVIATSSGA TIAYLRDEMLNLRVAMFLEIATTVGAIVGAIMTGLFNSTVLYVLFGSFLVFSSWNMYRKL RQGGSEEGSAKNDRLANQLNLNGSYYDKALKKQIDYQVENVPGGSAVMFGAGLASGLLGI GSGAFKVMAMDNIMKMPLKPSSATSNLMMGVTAAASAMVYFFNGSIHADIAGPLAIGILF GAQLGSRIMQRLRPRWIRLIFIPVLLYMGLQMVLKGFGVNF >gi|269838497|gb|ACXB01000014.1| GENE 157 153516 - 155684 2118 722 aa, chain - ## HITS:1 COG:lin0927 KEGG:ns NR:ns ## COG: lin0927 COG1368 # Protein_GI_number: 16799998 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily # Organism: Listeria innocua # 7 657 7 653 653 598 49.0 1e-170 MNRLWGKFRRGVNTKFGFFMLITGLFWLKSYIAYQTKFTLGVQGGMQELILAISPFGFAI LLFGIGLYIRGKWAYWYMIVMDAILSTWLFANILYYREFSDFITFNLIKGSGAASDNLGK SLMGILRPTDFLVFVDVIFVIAILAFGFVKIDQQRFKLVNSLAVTILSIGVLAANLALAY SNRSGLLTRTFDNNYIVKYLGLQSFTLYDGVKTVQNSNKKKEAKSSQLKPINEFLKKNNV PANIEYKGVAKGKNVIIIHLESLQQFVINQKWKGKEITPNINKFYNDKNTLAYDNFFNQV GQGKTADAEMMLENSLFGLPEGSAMVTDGTTNTFQSMPAIMDQHGYTTAAFHGDVASFWN RDNAYKSFGYQYFFSKQYYSLKKGYVSGYGMKDKLFLQQSAKFLEELPQPFYAKLITVSN HYPYGIEKKNVSIDPWETGDSTVDPYVQTAHYLDQAVGELISYLKKTGLYDKSLIMMYGD HYGISNNHKPAIAKILGLKGVTNYDLAMFQKVPFMIHAPGLKGGVNHNYSGEIDVMPTLL NLLGIDTPGAYQFGHDINSKQYNQIVAFRNGDFVSKKYTKYGGDLYYTATGEQITDETAS QKREVKQIQQYVNNELNYSDRIINGDLLRFADLDWFKKVNKADYSYTKKTALKNLKKAQK SKTSLLEQNHGRSTIDDYVTDAPELPENEEKAASSSSSSNNSSEDSSHSGSSSADTTTQE DK >gi|269838497|gb|ACXB01000014.1| GENE 158 155788 - 157356 1545 522 aa, chain - ## HITS:1 COG:SP0439 KEGG:ns NR:ns ## COG: SP0439 COG4108 # Protein_GI_number: 15900357 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Peptide chain release factor RF-3 # Organism: Streptococcus pneumoniae TIGR4 # 6 522 3 514 514 752 71.0 0 MNQAELKAAVDKRRTFAIISHPDAGKTTITEQLLLFGGVVREAGTVKARKTGNYAKSDWM EIEKKRGISVTSSVMQFDYAGKRINILDTPGHEDFSEDTYRTLMAVDSAVMVIDSAKGIE PQTKKLFQICKMRGIPIFTFMNKLDRDGREPLDLVNELEEVLGIDAYPMNWPIGMGKGLA GLYDIYNNRIELHTDEPEYLALDSNGELKEPNPIEEESVFQDAMMEVDLMKEAGNQFDEA KIAKGELTPVFFGSALTNFGVKTFLDAYLQFAPAPSAHKVADGEQIQPTDEEFSGFVFKI QANMNPNHRDRIAFLRICSGEFDRGMDVTLNRTGKTLRLSNSTQFMADARENVERAVAGD IIGLYDTGNFQIGDTIYAGKQPVQFEKLPQFTPELFMGVSAKNVMKQKSFHKGIQQLVQE GAVQLYTNYTTGDYILGAVGQLQFEVFQFRMQNEYNSEVVMQPMGKKIARWINPEQLDEK MSSSRNLLVKDRAGQPLFLFENQFAERWFKGKYPDVELTAKL >gi|269838497|gb|ACXB01000014.1| GENE 159 157423 - 157827 482 134 aa, chain - ## HITS:1 COG:lin1076 KEGG:ns NR:ns ## COG: lin1076 COG0615 # Protein_GI_number: 16800145 # Func_class: M Cell wall/membrane/envelope biogenesis; I Lipid transport and metabolism # Function: Cytidylyltransferase # Organism: Listeria innocua # 1 126 1 126 127 181 70.0 4e-46 MTRVITYGTFDLLHKGHVRLLKRARELGDHLTVCLSTDEFNAVKGKKAYTPYEDRKYILE AIKYVDEVIPERGWDQKINDVKENDIDIFVMGDDWKGQFDFLKDYCKVIYLPRTEGISTT KIKRDLGLGDYKKD >gi|269838497|gb|ACXB01000014.1| GENE 160 157903 - 159033 1160 376 aa, chain - ## HITS:1 COG:lin0908 KEGG:ns NR:ns ## COG: lin0908 COG0628 # Protein_GI_number: 16799980 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Listeria innocua # 2 368 3 364 378 253 40.0 3e-67 MFEKFRKTPLMYWSLELLIIATLLWVCTKIDFLFSLIGTFISTVFMPLILATFLYYMLHP LVKLLMKVHYKKFRISRTWAVVLVFVGFLLLIVWGISSFLPSLIDQISQMLGNLPMIAKK LQVAIPQLVDHSWLRKVDFDPYLKNLNNEIGQYAEQFLANMTNSIGNIIAALTNITVIVI TVPIILFYMLKDGYKLIPTISRIVPEHNRKSVLNLFYSMSDTLSSYISGQVIECIFVGTF TVIGYMIIHQPYGLVLGVIAGICNIIPYVGPYFGIFPSLLVAIAQSPEQVISVIIVVLIV QQVDGNLIYPNVIGKSLQIHPLTIIILLLVAGKLAGILGMILAVPTYAIVKVLINFIHHI WVLDRDKIEEKVKPEK >gi|269838497|gb|ACXB01000014.1| GENE 161 159113 - 159667 521 184 aa, chain - ## HITS:1 COG:SPy1608 KEGG:ns NR:ns ## COG: SPy1608 COG3557 # Protein_GI_number: 15675490 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Uncharacterized domain/protein associated with RNAses G and E # Organism: Streptococcus pyogenes M1 GAS # 8 181 4 177 177 242 66.0 3e-64 MSQYSDGPKEGEYIAIKSYKHDGSLHRTWRETMVLKNSQDEFIGCNDHTVVIEDNDRRWV TREPALVYFNKHTWFNVVAMIRDNGVSYYCNIASPYVLDREALKYIDYDLDVKVFPNGER RLLDTDEFEQFSRQWHYSADTIQILLDSVRELTDWINKKRGPFSVEFINIWYKRYLNIAE RNTR >gi|269838497|gb|ACXB01000014.1| GENE 162 159760 - 160575 739 271 aa, chain - ## HITS:1 COG:BS_yfhG KEGG:ns NR:ns ## COG: BS_yfhG COG2137 # Protein_GI_number: 16077919 # Func_class: R General function prediction only # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 12 270 4 263 264 136 33.0 3e-32 MININSEETKKITKITAQKRAGRYNVFLDGEYAFPISEETFIHFRLGKGMAVNGTLLKEI GEYETNAEAYNIALTYITGQLRTENEVRQKLRQQDYEESVIEAVIAKLADLNLLDDREYA KSYVRTMMRTGDKGPRYLINHLRQKGVLENDLQAGLQLFTDAEQVALAVRVGQKLQKRHQ AQALRQQQLKIRQNLMQKGFTSEIIEKALAEIEFTVDSDAEYEKLRKLGERLLRRYQGQP EYQRTTKIKRSLYQKGFEMELIERFLNENDS >gi|269838497|gb|ACXB01000014.1| GENE 163 160628 - 161086 732 152 aa, chain + ## HITS:1 COG:SP1297 KEGG:ns NR:ns ## COG: SP1297 COG0716 # Protein_GI_number: 15901157 # Func_class: C Energy production and conversion # Function: Flavodoxins # Organism: Streptococcus pneumoniae TIGR4 # 1 144 1 142 147 124 50.0 6e-29 MPTAKVVFATITGNNEDCADIITEALEDLGVEVDETEISQTDAAELKDYDINVIVPYTYD EGALPEEGLDFYDDLADLDLSGKIYGVAGSGDTFYEEFYCVAVDKFSEALTKANATKGTA DLKINLAPESQEDLDHLDQFAQDLVDAYNAQN >gi|269838497|gb|ACXB01000014.1| GENE 164 161287 - 161913 633 208 aa, chain - ## HITS:1 COG:MA1701 KEGG:ns NR:ns ## COG: MA1701 COG3153 # Protein_GI_number: 20090553 # Func_class: R General function prediction only # Function: Predicted acetyltransferase # Organism: Methanosarcina acetivorans str.C2A # 7 207 19 215 217 129 35.0 3e-30 MEKDYLIRLEQPADYRETETMVREAFWNVYRPGCYEHYVLHVLRKSSEFVPQLNLVMEKG HQIIGQICFVKAKMVDKNGNEVPVLTFGPLSIAPAYQRKGYGKKLLDYGIAQARKWGASV LCIEGNLAFYKHAGFEVATTKGIRYAGEPENGEIPYFLAKELREGFFEQAQEALYYTPSA YYVSESDVNKFDQQFPSKEKRVLPGQLA >gi|269838497|gb|ACXB01000014.1| GENE 165 162124 - 162726 310 200 aa, chain - ## HITS:1 COG:no KEGG:DSY0717 NR:ns ## KEGG: DSY0717 # Name: not_defined # Def: hypothetical protein # Organism: D.hafniense # Pathway: not_defined # 1 183 1 181 193 107 40.0 2e-22 MIMWTNQPYSVYVQLMERKAFSCDETQQPNLKDNDNFQIAYCWMAEQMKDKVNFPPSGVK YPIWAWYKQNYAHRSPDFRRRLDYEDQVCIEIEVPEEVVLLSDFEKWHFVLNDWYLPNAS GEAEWLQQERWFDGLSKEAQRLYKQKSWQKIFDVTPRKGEWTANGRDVQGCFWVLKSEYV RKVWRLQKGCKTKLIQGSFK >gi|269838497|gb|ACXB01000014.1| GENE 166 162748 - 163635 725 295 aa, chain - ## HITS:1 COG:MA4541 KEGG:ns NR:ns ## COG: MA4541 COG1715 # Protein_GI_number: 20093325 # Func_class: V Defense mechanisms # Function: Restriction endonuclease # Organism: Methanosarcina acetivorans str.C2A # 92 294 90 297 303 81 31.0 1e-15 MTKNKTIEAENLIMKESLIAMRKLGGKVTRKDIRREIRDHSEVISEKRVDEIRTSKKSGN QYHPFEYDFNFAIKHLILAEFINTDDNHTLELAEKGRSIDLEQFDAFRDVRALSEPKFPR QKKTTHVEKVTETVDDTDNDVDEPWRQELLNALVKMNPHKFELFCRGLLKQMGIDIDDKI GVQYIADGGLDGFGYVQSDDYRTTRVALQAKRWRGKVSAPEIDKFRGAMDKYNAEFGIFI TNSDFTREAINTAKEGTRIITLINGDEVCNLVAKYQYYVEEVVTYRLKSFYTDFN >gi|269838497|gb|ACXB01000014.1| GENE 167 163855 - 164175 345 106 aa, chain + ## HITS:1 COG:emrE KEGG:ns NR:ns ## COG: emrE COG2076 # Protein_GI_number: 16128526 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane transporters of cations and cationic drugs # Organism: Escherichia coli K12 # 3 102 4 103 110 66 43.0 1e-11 MHYIVLIFAILCELVGTNLMKLSAGFTKISFSAGTLGAYALCFYFLSLSLRGITLNVAYA TWGGAGIVLATLLSYLVYHEETSGTQLFGIVLIVIGVILANLAGNH >gi|269838497|gb|ACXB01000014.1| GENE 168 164305 - 165672 1289 455 aa, chain - ## HITS:1 COG:SP1029 KEGG:ns NR:ns ## COG: SP1029 COG2265 # Protein_GI_number: 15900900 # Func_class: J Translation, ribosomal structure and biogenesis # Function: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 7 454 2 450 543 435 49.0 1e-122 MKIKAPVEKNQTYTVDITDLTYQGMGVAKIEHFPIFIADSIPGEQIQVKITKVQKNFAFG RVEKVIVESPDRVAGNDATYTQTGIAPLQHIAYPAQLKFKQTQIKNLLQKSHLEQIEVAE TVGMENPTGYRNKAQVPVRKVKGQLATGFFKRGSHDLVPIEDFYIQDPVIDQVILKVRDI LREYQIEPYDEINQRGVVRNIMVRRGRRSGEIMVVLITRTSSVPHLDEIAEAIHQIDGVV SVIQNINPKQTNVIMGKEDRLLAGESVIHDELLGQKFIISAHSFYQVNPVQTEKLYQLAI KKAGLTGKETVLDVYSGIGTISLAMAQAAKKVYGVEIVKEAVQDAKVNAVQNQAKNVKFV VGKAEDQMAKWQAEGMQPDVVVVDPPRKGLDESVIDATVAMAPKRVVYVSCNPATLVRDI DRFQAQGYKVDQPITPVDQFPQTPHVESVTVMSRS >gi|269838497|gb|ACXB01000014.1| GENE 169 165946 - 166944 1052 332 aa, chain - ## HITS:1 COG:SPy0752 KEGG:ns NR:ns ## COG: SPy0752 COG1597 # Protein_GI_number: 15674801 # Func_class: I Lipid transport and metabolism; R General function prediction only # Function: Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase # Organism: Streptococcus pyogenes M1 GAS # 4 328 6 337 340 371 56.0 1e-102 MRKRARIIYNPTSGREMIKQHLVEILAVFEKAGYETSAFATTPEPNSAKNEAHRAAKDGF DLVVAAGGDGTINEVVNGIAPLHRRPKLAIIPAGTTNDYARALRIPREDPVAAAKVVLQN QRMKMDIGKAGDNYFINIAAGGLLTELTYDVPSNLKSIFGYLAYIVKGAEMLPRVKPVEM DIEYDGEHFHGQASMFFLALTNSIGGFEQIVPDASLDDGKFTMIIVKSSSLPDLLHLMVK ALNGKHVDDPRIIYRKARKVVVNPVNERVMVNLDGEYGGDAPMIFKNLKRHIDMFTNLDS VPVSEPEDDEYRQVEEQFVAEVQNLSQDDDQE >gi|269838497|gb|ACXB01000014.1| GENE 170 166972 - 168399 1460 475 aa, chain - ## HITS:1 COG:BH0667 KEGG:ns NR:ns ## COG: BH0667 COG0064 # Protein_GI_number: 15613230 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) # Organism: Bacillus halodurans # 1 475 1 476 476 620 65.0 1e-177 MNFKTTIGLEVHIELKTNSKIFSPSPVEFGDQPNENTNVIDWGYPGVLPQTNKGVVEAGM MAAKALHANIARTQHFDRKNYFYPDNPKAYQITQADTPIGTDGWIEIEVDGKKKKVGIAE MHIEEDAGKNTHNPNGYSYVDLNRQGTPLIEIVSKPDIESPDEAYAYLEALRQRIQFTGI SDVKMEEGSMRVDVNISIRPEGSNTYGTKAELKNINSFNFVRKGLAYEEKRQQKLLLSGG EVRPETRRYDEATGQTILMRVKEGADDYRYFPEPDLPSITISDEWIKAVEDKMPEMPGKR RARYVNELGLSDYDAMVLTQTKEMSDFFEAAIAFDADPKLVANYLMGDVNAYLNEQKVDL QDTKITPEHLASMVKMISDETISSKIAKKVFKAITKGEEPVSWVKEKGLVQLSDPAVLKP IITQVVDDNEQSVIDFKNGKDRAVGFLVGQIMKQTKGQANPKVVNQILMQELNAR >gi|269838497|gb|ACXB01000014.1| GENE 171 168399 - 169859 439 486 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163737840|ref|ZP_02145257.1| 30S ribosomal protein S4 [Phaeobacter gallaeciensis BS107] # 7 475 8 456 468 173 28 6e-42 MKFFDITVTELHQKLVDRELTVTELVSQTLDQIEADQAVLNDFVTINRDEALKQAQAIDE KGVDPDNLWAGIPIAVKDNIVTKGLKTTASSKMLSNFTPIYDATVIERLKANDVIVIGKT NLDEFAMGGSTETSFYGTTRNPWDHTKVPGGSSGGSATTVAAGNSIAALGSDTGGSIRQP ASYTGIVGVKPTYGRISRYGLIAFGSSLDQIGPMTRTVKDNAALLNIIAGMDERDLTSSD KKVPDFTAKIGQDIKGMKIALPKEYLGKGINEDVKATIKQAVQTLTDLGATVEEVSLPRS NYGVAAYYIIGSSEASSNLQRFDGIRYGYRADDVKNLEDVYVKSRSEGFGDEVKRRIMLG TYALSAGSYDAFFKKAAQVRTLIIDDFNKVFENYDLIIGPTAPTPAYKIGAEVDDPTTMY MNDVLTIPVNLAGLPAMSLPAGFSEGMPVGLQMIAKPFDEQTMYQAGAAFEAATNFYQKH PETEDK >gi|269838497|gb|ACXB01000014.1| GENE 172 169859 - 170173 456 104 aa, chain - ## HITS:1 COG:L0475 KEGG:ns NR:ns ## COG: L0475 COG0721 # Protein_GI_number: 15672144 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit # Organism: Lactococcus lactis # 5 104 2 101 101 79 47.0 2e-15 MTVENNITKNDVAHVATLAKLKLDDAQLEKFTNQFEDIIDLVEQLNEVDTTNVEPTFNVT DQLNRMREDQAVRSGDKEALLNNAPDTEDGFIRVPAILDESEEA >gi|269838497|gb|ACXB01000014.1| GENE 173 170193 - 171350 975 385 aa, chain - ## HITS:1 COG:lin1869 KEGG:ns NR:ns ## COG: lin1869 COG4851 # Protein_GI_number: 16800935 # Func_class: R General function prediction only # Function: Protein involved in sex pheromone biosynthesis # Organism: Listeria innocua # 9 382 4 370 371 241 35.0 2e-63 MKVTKKISLLVATLLLGVGLSACGGLNNSSMSSATNNVTGEKNKKTTYQTTGSSSGQYAG VIKNGKYVVSKSRGLTADQNGNVNNTKSFETGLQDVSKEVFAPSKYVFQEGQYLSSDTVQ SWLDRKSKKNPDGLNPKDNGSKDPDKRNPIYLQALEEQDYMQKSGNSLKLKGVTIGLAMN TVDYYQKKQYGAEYETKISDAEIKEQSTRIAKEVLQRLRKKDEFKDIPIVIAVYKQASND SLTGGTFIRYSNNQGNQLASWKNLDYKNVVYPIGDNESTPNSNDSTAFDNFKTQVESFFP NLSGITAKARYKGDSMQGMSVTITTQFYSETEINSFTQFVSTQAEKYLPSGVNIDITIRS SDDVQSFLSRSSKDKTFSSHVFTSY >gi|269838497|gb|ACXB01000014.1| GENE 174 171426 - 173699 2194 757 aa, chain - ## HITS:1 COG:BS_yerF KEGG:ns NR:ns ## COG: BS_yerF COG0210 # Protein_GI_number: 16077729 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases # Organism: Bacillus subtilis # 4 754 6 738 739 811 56.0 0 MPENDLLKGLNDMQQQAVQTTEGPLLIMAGAGSGKTRVLTHRVAYLIEEKDVNPWNILAI TFTNKAAREMRERVANLLGEVASEIWVSTFHALCVRILRRDIEQIGYNRAFSIADPSEQR TLIKHVLADLNYDPKVYDPRSVLGKISNAKNDLMTPADYQENASNPHDEAVGKIYDEYQR RLKANQALDFDDLIMQTIRLFEQSPETLQFYQNKFHYIHVDEYQDTNQAQYQLVTMLAKG FRNLCVVGDSDQSIYGWRGADMQNILNFESDYPDAHTVMLEQNYRSTQNILNAANDVIAN NVERKPKQLWTDNDEGAKISYYRGQTGNDEVHFIVQQIRKQIEENNFDYGDFAILYRTNA QSRLVEDTFVKANIPYTMVGGHKFYDRKEIRDVLSYLTLIANEEDSMSFERVINEPKRGI GATSMAKLQAFADENSWSLLQAARNVQIANGIARRTRNAIEDFAKTIDALRKSAEFLSIT ELTETLLDKTGYRAALEQTRTMEAEARLENINEFLTVTKQFDEQNDAEGTEVADENGDNV RLVDFLADLALVSDQDDVEEEPSAVTLMTLHAAKGLEFPVVFLVGMEEGVFPLSRAATDP DELEEERRLAYVGITRAQKKLYLTNAYSRMLYGRTQNNPASRFIGEISAEYLQDENEQVQ GFSSSSRNKYPFDRERNARATASVYGTQRAKVSTNQGTGAEKVSWAAGDKVQHKAWGVGT VVKVSGTGEDVELDIAFKDQGIKRLLAAFAPIKRVTD >gi|269838497|gb|ACXB01000014.1| GENE 175 173790 - 174929 1109 379 aa, chain - ## HITS:1 COG:lin1886 KEGG:ns NR:ns ## COG: lin1886 COG0026 # Protein_GI_number: 16800952 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) # Organism: Listeria innocua # 30 379 24 373 374 173 28.0 4e-43 MENEVITSKKIIYPGDMIGIIGEGRSSVQLVTTAKSMGFKVSVYVTSEQNEVVHYADKSF VGSLNDGEKLQRFAERCKIVMYESEMVDIKIIKYLQQFVSIPQGTQLLELNQDRIIEKAT MEQLGIKTAPYVTIVDLDDLYDSVNEIGYPGILQPILKDPLNEQSLLLESEIDVPKAAPL LERGTYLLQSWPDTGREVALSVVKGQNHRQKMFPMVENIYQNHHLKETRVPVDIDPRIQN NLLEQATKIANSIEYVGVFSIVFYVQDGEIYLKRLIPGIHRSQNIFNLASNTTVYEETLR ALSGMVISDIRLQVPTIMLNVAEPQMQKIKTQWLIKDNWHFHFYPQVSEHKDENHVGYVL ADGDNVKQIQEQIDNTDVW >gi|269838497|gb|ACXB01000014.1| GENE 176 174963 - 175535 716 190 aa, chain - ## HITS:1 COG:lin1998 KEGG:ns NR:ns ## COG: lin1998 COG0503 # Protein_GI_number: 16801064 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Listeria innocua # 1 184 1 184 192 213 59.0 2e-55 MKLLEDKIRSEGIVLPHNVLKVDGFLNHQVDPQLMFEIGKEFARLFKDQKVTKILTVESS GIAPAVMTGLAMDVPVIFARKHKSLTLKDDLYTASVYSYTKQTSNQISISKRFIDSNDRV LIIDDFLANGQAVSGLFDIADAAKIDVVGVGIVIEKTFQKGSQIIKDRNVQLESLAKIKA LTDDGQVEFE >gi|269838497|gb|ACXB01000014.1| GENE 177 175557 - 176198 467 213 aa, chain - ## HITS:1 COG:lin1179 KEGG:ns NR:ns ## COG: lin1179 COG1705 # Protein_GI_number: 16800248 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Muramidase (flagellum-specific) # Organism: Listeria innocua # 25 212 5 181 328 160 43.0 1e-39 MAKKKRRRKNNFFYQQGQLKVSSIIGLLLVVCLVVELGMKLRTEATQVTDNLTTTSATAQ RHQQFIKTIAPYAQQMQRQYGILPSITMAQAILESDWGQSTLSKKFNNYYGIKGDSDQNS RYFKTQEFVNGKWVTVAARFKVYSSWQESMRDHSLLLVNGTNWNPRQYQAVITASDYKQA AQALYDAQYATDPDYPAKLINLIQKYNLNQYDK >gi|269838497|gb|ACXB01000014.1| GENE 178 176299 - 176907 707 202 aa, chain - ## HITS:1 COG:CAC0331 KEGG:ns NR:ns ## COG: CAC0331 COG4684 # Protein_GI_number: 15893623 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Clostridium acetobutylicum # 8 181 10 178 192 68 35.0 8e-12 MQKQNHARKISILALFAAIIIIQNYVPLVGYIPVGMLEITTIHITVIVAAILLGPVDGGI VGGIWGLVDWLRAITVTSSALGNVVMVNPLISIVPRILIGVITGWLVNWLIKTKLPQQVT FIISSVLGSLVNTVLVLSLIYVFYHNGSQVYAALNLKELMPYLLTVAGVHGIPEAIAAGI IAPLLAVPLLKYSKVGQQRFKQ >gi|269838497|gb|ACXB01000014.1| GENE 179 177325 - 179124 1540 599 aa, chain + ## HITS:1 COG:MA1603_2 KEGG:ns NR:ns ## COG: MA1603_2 COG1061 # Protein_GI_number: 20090461 # Func_class: K Transcription; L Replication, recombination and repair # Function: DNA or RNA helicases of superfamily II # Organism: Methanosarcina acetivorans str.C2A # 211 599 30 422 618 417 51.0 1e-116 MNLEPNFNNSILAALSNYQLPAENEYLPQLITNQTAVNLKLHLEQELQNCTGFTLAVAFI TNGVLTDLKVQFADLAIQNISGRILTSTYLYFNHPHVFEELLKIPNVEVRIIDQQQNFHA KAYLFDKPEGYQTFILGSANLTEAALIQNYEWNIKLTAHRHGQLARTINHEVDQLWQNAR PLDEIWLSQYRKAYQQATPRLTSTPSSSPTTSITPNAMQKDALASLTELRQSGAKRGLIV SATGTGKTYLGAFDVRNFNPRKFLFVVHREQILRKALRSFRKVLGGPASDYGILSGNQHD TNCKYLFATIQTLSRESILQSLPADMFDYVLIDEAHKAGAPTYQQVIDHFQPEFLLGMTA TPERTDDFNIYELFDYHIAYEIRLQAAIESDMLSQFHYVGITDYEYQGQLIDEKTPLRHL LAQERMDYVAEQIDYYGHDGERVYGLIFCSRQAEAVEVAQIMTAKGHPTRALTGNTSVSE REKIIRRFEKGELEYLVTVDIFNEGVDIPKVNQVIMLRNTESSIIFIQQLGRGLRKAPEK SFVTIIDFIGNYKNNYLIPIALTGDQSLNKNRLRQQIATNQTIGLSSINFSRIAKERIY >gi|269838497|gb|ACXB01000014.1| GENE 180 179152 - 180171 569 339 aa, chain + ## HITS:1 COG:Cgl1126_2 KEGG:ns NR:ns ## COG: Cgl1126_2 COG1061 # Protein_GI_number: 19552376 # Func_class: K Transcription; L Replication, recombination and repair # Function: DNA or RNA helicases of superfamily II # Organism: Corynebacterium glutamicum # 2 334 437 778 789 161 30.0 2e-39 MATLREAYQALKNKLGRVPRLADFQKFGSVDGQVLVDKYENYQQFLIKMHDEQPLTKSAD AFLRLISREFLNGMRIHELVLLQQLFKQPRYAKQALVSRLHELGTYTDPATLQSVNNHLD LSYFQPRDQVKYGQTAWVTLQDGYYQLNDELWAQYQQNPYFKNSVDDVLQVGMWNSKRYD QQTKFTRNQRYTRRHVNRLLGWPKDQSSAIYGYKANQGSCPLFVIYQKRPQSPVAARHQN VFYDTQTLSWFTKTPRKLDSKEVVHLLKGNRQQTIAFPLFVKKSEDEGADFYYLGLVDFD FQSLEQQTRIINGHEKPIVKANLQLRTPVDYQLYLNLIN >gi|269838497|gb|ACXB01000014.1| GENE 181 180218 - 181336 908 372 aa, chain + ## HITS:1 COG:no KEGG:LSA0827 NR:ns ## KEGG: LSA0827 # Name: not_defined # Def: lipoprotein precursor # Organism: L.sakei # Pathway: not_defined # 46 371 57 379 380 161 31.0 4e-38 MQNLKRTFGWLASIGMGALLLTACGNSNSSSSSVHQNTATDLTKSSQARSTTHKATPSAL WDPRKAEQLSSFMESFGQTMDQSYTACTPGHNTTYAGLHYPDDLKQRRTAFDDQKLSAGW APTGKGHYRVNVVAVYEDPGQGTLGGHVYLFAIKDGKPVVYHTSQNQGMPDNLTHFTTTE NQTLRQGFAKIVAGQQVALPNKSSSSKKAVAPTHHYVKFVFPQWMQGTWYSADDDGKIEK LVVTGNLLNTDGVKTPTYDGASRTAADMKVLNGGGKPDPAKTDWGAGGLNSPSESLFDDP SKVSQVVNVRGWYQGAGDGTYFYTSTEKDGGQPFTVLTQAGGAGMWLTAHYYRSVDLAKQ HQDEHYSTDRDN >gi|269838497|gb|ACXB01000014.1| GENE 182 181601 - 181858 308 85 aa, chain - ## HITS:1 COG:no KEGG:PEPE_1383 NR:ns ## KEGG: PEPE_1383 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 79 1 79 88 111 75.0 9e-24 MIFGTILKNARKQRNLSQIELIRSIHDEYGIDISTSMLSRYEDELTPVPRRMSIEALFAL AVYLDLDLNELAREEIKQISSKKHH >gi|269838497|gb|ACXB01000014.1| GENE 183 182014 - 182223 189 69 aa, chain + ## HITS:1 COG:no KEGG:PEPE_1384 NR:ns ## KEGG: PEPE_1384 # Name: not_defined # Def: XRE family transcriptional regulator # Organism: P.pentosaceus # Pathway: not_defined # 1 68 1 68 68 89 64.0 4e-17 MCDNYRDFRGVLAYLKENQIKQETVANFLGIGRTTLNRKLNGASEFKLSEVKLIHEHFNV PLEIFFKDV >gi|269838497|gb|ACXB01000014.1| GENE 184 182785 - 182988 269 67 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRYDRFTEADVQEFFDYYYVDRGIIKWQGYYLSDHLNALKRDAEQRTAKLQWDEKHYGIG EEPGKGS >gi|269838497|gb|ACXB01000014.1| GENE 185 183020 - 184321 1118 433 aa, chain - ## HITS:1 COG:pli0067 KEGG:ns NR:ns ## COG: pli0067 COG0389 # Protein_GI_number: 18450349 # Func_class: L Replication, recombination and repair # Function: Nucleotidyltransferase/DNA polymerase involved in DNA repair # Organism: Listeria innocua # 2 428 6 426 426 333 42.0 5e-91 MDYRKEPRGVFFLIDNKSFYASVEAVQRGLNPLRAVMVVMSEQANTNGGLVLATSPMAKK LFNLHANVSRQRDLPNTKQLLVVPPRMNLYIQKNLQINNIFRQFVADEDLLPYSIDESIL DVTRSWQLFGRTPREVAQKIQRTVCEQLGLYTTIGIGDNPVQAKLALDLYAKKSPALIGE IHYESVAQKIWPITNLTEVWGIGKRTERRLNRLGINTMADLAHANPFKLKEALGIIGWQL YATAWGIDRSKLQQPIQPKDSSVGNSQVLPRDYCQQLEIETVIKEIGEQVAARLRHRQKQ TRCISLGIGFSYAASVEDGRGGFHVAQKITPTNENFALTHVLIQLFRENWQGEAVRNIAV YASKLAPATGQQLDLFHSATQQIKHYDIEKAVDKIRQQYGFKALVYARSKTPGATAINRA GLVGGHNGGNAYE >gi|269838497|gb|ACXB01000014.1| GENE 186 184467 - 185843 970 458 aa, chain - ## HITS:1 COG:BS_yfnA KEGG:ns NR:ns ## COG: BS_yfnA COG0531 # Protein_GI_number: 16077801 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Bacillus subtilis # 12 451 16 456 461 335 44.0 9e-92 MKNRINLDLIFKSAAKSEAERTLSLFDLSILGIGAIIGTGILVLTGIVAAITAGPAVVFS FLIAALASGLIGLCYSELATTIPNSGSAYVYAWVSIGQLVGFLAGWTLLGVYVTTAATVA NGWTGYVHSFLHEVGVNLPHQLLVAPSMGGWMNLPAFLMILLITFVLTKGTGESKWINNA LVLVKLTIILLFIVVSVPNVKTGNWSSFNPYGIKGIVTGASTVFFTFLGFDALATSAEDA KNVRHNLPRAIIISLVVTTSLYIVVSMVMTGVVAYPHLNVSEAMAYVLLSKGHDLAAQVV SAGAILGIMAVVYAFIYANSNVMKAMSRGGFLPQNWAKLNPKTQSPNLALWISGCFAALL AGFFDLRNLALIANVGSLSVFFLISLIVILLRRQYPDLPRPFRIPFGNVIPIAAMLICAL LLANITFSAWEFYLGWLVVGFALYELYSKNHIIERTDP >gi|269838497|gb|ACXB01000014.1| GENE 187 185855 - 186955 1067 366 aa, chain - ## HITS:1 COG:SA1531 KEGG:ns NR:ns ## COG: SA1531 COG0686 # Protein_GI_number: 15927286 # Func_class: E Amino acid transport and metabolism # Function: Alanine dehydrogenase # Organism: Staphylococcus aureus N315 # 1 361 1 363 372 387 55.0 1e-107 MKIGIPKEIKAQEQRIGASPNTVANLVQAGHEVVIEKGAGIGSGYSDETYENMGAKLGFV EDVWNCEMVMKVKEPLPAEYQYFRPGLIIYTYFHLAADRRLTEALLKSKVTSIAYETMVG PAGDLPLLFPMSEIAGRMSVQVGAHFLERPHSGKGVLLSGVTGVARRKVAIIGAGTVGFN AAKIVVGLGAQVTILDINAQRLAEVDNIFNGNIQTLSSNSHNIARAVKEADLVIGAVLIP GALAPKLVTTAMIDSMEPGSVVVDIPIDQGGIFETSVKATTLDDPIYVSHGVIHYTVANV PGSVPKTATDALTSATVRYAVMIANQGVEAAAANQTVLTGINTFNGQLTSKAVADSLNIE YTPFMS >gi|269838497|gb|ACXB01000014.1| GENE 188 187276 - 187494 298 72 aa, chain - ## HITS:1 COG:no KEGG:lp_0126 NR:ns ## KEGG: lp_0126 # Name: not_defined # Def: stress-responsive transcription regulator (putative) # Organism: L.plantarum # Pathway: not_defined # 1 62 1 62 64 84 58.0 9e-16 MKINIHRSANNRLLAGVLGGLSEHYGWNASHVRIIYLLLSFTPIFPGIIVYLILWLLMES PVDYSKKRKIIN >gi|269838497|gb|ACXB01000014.1| GENE 189 187821 - 188213 658 130 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116493130|ref|YP_804865.1| SSU ribosomal protein S9P [Pediococcus pentosaceus ATCC 25745] # 1 130 1 130 130 258 97 3e-67 MAEAQYRGTGRRKNSVARVRLVPGTGKITVNDRPIEEYIPFANLRQVVIQPFGVTETNGN YDVIANVNGGGFSGQAGAIRHGIARALLDVDPDFRAPLKKAGLLTRDPRMKERKKYGLKK ARKAAQFSKR >gi|269838497|gb|ACXB01000014.1| GENE 190 188228 - 188671 695 147 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116493131|ref|YP_804866.1| 50S ribosomal protein L13 [Pediococcus pentosaceus ATCC 25745] # 1 147 1 147 147 272 87 1e-71 MRTTYMAKPGEVERKWYVVDATDVPLGRLSTVVASILRGKNKPTYTPNVDTGDFVIVINA NKVKLTGHKATDKIYYHHTLHPGGLKMKTAGEMREKTPERLIETSVKGMLPHNSLGRKLG LKLHVYAGTDHKHQAQNPEKLDITNLI >gi|269838497|gb|ACXB01000014.1| GENE 191 188797 - 189543 703 248 aa, chain - ## HITS:1 COG:SP1599 KEGG:ns NR:ns ## COG: SP1599 COG0101 # Protein_GI_number: 15901439 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthase # Organism: Streptococcus pneumoniae TIGR4 # 2 248 3 247 249 226 45.0 2e-59 MRYKITMAYDGTNFAGFQAQPNQRTVEGVLKRAVNKIAKNPQPEIPIFGSGRTDAGVHAF GQVVHFDLPIEMTANNMLHALNSILPLDTQVKKVEIVDEDFHARFTTHGKRYQYRMALGE FVDPFKRNYTGHWKFPISIELIQQAIKDLEGTHDFSSFVASGSTAKNHVRTIYEAKAWKD EAQNEIIFEFYGNGFLYNMVRIMVAVLVEIGSKRRPVDDIPRLLAVKDRNQARGTAPASG LYLKEVDY >gi|269838497|gb|ACXB01000014.1| GENE 192 189551 - 190345 575 264 aa, chain - ## HITS:1 COG:lin2783 KEGG:ns NR:ns ## COG: lin2783 COG0619 # Protein_GI_number: 16801844 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, permease component CbiQ and related transporters # Organism: Listeria innocua # 1 263 2 264 266 235 47.0 7e-62 MNKILFGRYIPGHSFIHRMDPRAKLILSLVYIVAVFLANSWAAYLASFVLAMVIIAASAI GPRFFWDGVKPLIGVILLTMIIQVFFGVGGHVYWHWGILSITSNGLLNAVYIAIRFILII LVSTVLTLTTSPLEISGAIEAIFMPLKKVHFPVYEMALMLSIALRFVPTLIDETEKILNA QRSRGADFSSGSILVRLKKLVAILIPLFESAFSRAEELATAMESRGYQGGEGRSKYRVLN YTKNDIIGTVTMLLAAVVIIALRR >gi|269838497|gb|ACXB01000014.1| GENE 193 190338 - 191207 421 289 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 1 280 126 396 398 166 37 8e-40 MGMSIKFKSVSYVYQAHTPFENLTLRDVDLTIPTGSYTAIIGHTGSGKSTLIQHVNGLLK PTTGTVEVDNQVIDATTKNKALVALRQHVGIVFQFPESQLFAETVLDDVKFGPLNFGLSD AEATQRAQQALAKVHMPENTWQKSPFELSGGQMRRVAIAGILATNPAILILDEPTAGLDP QGRTEMMELFAELHEQEHLTILLVTHQMDDVANYADQVVVMDDGQIIKVGSPRAVFSAPE WLLEHQLGLPQVTEFAQRLMQRGFHFDPVPLQMGELIEQLKQNGGRARE >gi|269838497|gb|ACXB01000014.1| GENE 194 191177 - 192019 766 280 aa, chain - ## HITS:1 COG:L75718 KEGG:ns NR:ns ## COG: L75718 COG1122 # Protein_GI_number: 15672259 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, ATPase component # Organism: Lactococcus lactis # 1 259 1 259 277 278 52.0 1e-74 MENIIEVKHLTYKYANNGDKKALDDVSVAIQKGTWTAIVGHNGSGKSTLARTIDGLMTFR EGTVTVAGIPLSEDTVWDVRKKIGMIFQNPDNQFVGATVEDDVAFGLENLGIPTAEMHQI VERVLTQVRMSDFKSRQPDQLSGGQKQRVAIAGVLATKPEIMILDEATSMLDPQGRTEII QLINQVHQQQELTVLSITHDVSEAMLADQVIVLNDGKVVTTGTPQAVFADNQLLEQTGLE KPFSGQLYDELVAHGFNVPLALKMNEAKLEEWVCQLSSNQ >gi|269838497|gb|ACXB01000014.1| GENE 195 192199 - 192582 617 127 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116493136|ref|YP_804871.1| 50S ribosomal protein L17P [Pediococcus pentosaceus ATCC 25745] # 1 127 1 127 127 242 98 1e-62 MSYRKLGRTSSQRKALLRDLTTELIVNEKIVTTEARAKEVRSTTEKMITLGKRGDLHARR QAAAFVRNVVADVTEDGEDVKVSSALQKLFAELAPRYADRNGGYTRIYKTMPRRGDGAPM VVLELVD >gi|269838497|gb|ACXB01000014.1| GENE 196 192604 - 193548 782 314 aa, chain - ## HITS:1 COG:lin2755 KEGG:ns NR:ns ## COG: lin2755 COG0202 # Protein_GI_number: 16801816 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, alpha subunit/40 kD subunit # Organism: Listeria innocua # 1 314 1 314 314 407 69.0 1e-113 MIEFEKPKIHKIDENDNYGRFVIEPLERGYGTTLGNSLRRILLSSLPGAAITSVQIDNVL HEFSTIEGVVEDVTQIILNLKKVSLKIESDDEKTLDINVVGPANVTAGDIMGDGDVTVLN PDSPICTVAEGTTFHAVLTADTGRGYTSADENKARKADMPIGVLPIDSIYTPIERVNYQV EKTRVGQRDDYDKLTLDIWTDGSITPSEATSLSAKILTEHLAIFVNLNDQAKETEIMVEK EETHKEKMLEMTIEELDLSVRSYNCLKRAGINSVQELTDRTEAQMMKVRNLGRKSLVEIQ EKLNSLGLSFRSED >gi|269838497|gb|ACXB01000014.1| GENE 197 193632 - 194021 647 129 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116493138|ref|YP_804873.1| 30S ribosomal protein S11 [Pediococcus pentosaceus ATCC 25745] # 1 129 1 129 129 253 99 5e-66 MATKRNTRKRRVKKNIESGVAHIHSTFNNTLVMITDPQGNAVAWSSAGALGFKGSRKSTP FAAQMASEAAAKAAMEHGMKNVEVAVKGPGSGREAAIRALQATGLEVSAIRDVTPVPHNG SRPPKRRRV >gi|269838497|gb|ACXB01000014.1| GENE 198 194042 - 194407 593 121 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116493139|ref|YP_804874.1| 30S ribosomal protein S13 [Pediococcus pentosaceus ATCC 25745] # 1 121 1 121 121 233 96 9e-60 MARIAGVDLPRDKRIVIGLTYIYGIGNTTAQKILKDADVSEDVRVRDLTADQEDKIRAEV DKYLVEGDLRRTVSLNIKRLQEIGSYRGMRHRRGLPVRGQHTKNNARTRKGKKVSIAGRK K >gi|269838497|gb|ACXB01000014.1| GENE 199 194433 - 194552 211 39 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116334246|ref|YP_795773.1| 50S ribosomal protein L36 [Lactobacillus brevis ATCC 367] # 1 39 1 39 39 85 97 2e-15 MKVRPSVKPMCEHCKIIKRKGRVMVICSANPKHKQRQGK >gi|269838497|gb|ACXB01000014.1| GENE 200 194580 - 194798 306 72 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15900168|ref|NP_344772.1| translation initiation factor IF-1 [Streptococcus pneumoniae TIGR4] # 1 72 1 72 72 122 81 2e-26 MAKDNVIEIEGKVKETMPNAMFKVELENGHEILAHVSGKIRMHYIKILPGDRVTVEMSPY DLTKGRITYRFK >gi|269838497|gb|ACXB01000014.1| GENE 201 194951 - 195610 586 219 aa, chain - ## HITS:1 COG:L140714 KEGG:ns NR:ns ## COG: L140714 COG0563 # Protein_GI_number: 15674059 # Func_class: F Nucleotide transport and metabolism # Function: Adenylate kinase and related kinases # Organism: Lactococcus lactis # 4 216 1 214 215 281 63.0 8e-76 MTKLNLVLMGLPGAGKGTQAQKIIEDFKIPHISTGDIFREAMKNETKMGIEAKKFIDKGE LVPDSVTNGIVEDRLAMDDVNDGFMLDGFPRNLEQAKALDEMTSRLNKPLTAVINIHVEP EVLVERLSGRFICKNCGATYHKLYNPPKVEGTCDVCGHHEFYQREDDKPETVKNRIAVNT KLNAPLIDYYEEKHLLYNINGDQDINDVYSEVKKVLEAL >gi|269838497|gb|ACXB01000014.1| GENE 202 195642 - 196940 735 432 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163796899|ref|ZP_02190856.1| 30S ribosomal protein S11 [alpha proteobacterium BAL199] # 10 431 19 438 447 287 38 3e-76 MFSTVINALKVKDIRHKIFFTLGILIVFRLGSYITVPGVNAHALQSISSSGLVGILNTFS GGGLTNYSIFAMGVSPYITAQIIVQLLQMDIVPKFVEWSKQGEVGRRKLNQATRWLTIVL AFAQSIGITAGFNYLSQMNLVETPNVHTFLTIGLILTAGTMLTTWLGDMITERGIGQGVS MIIFAGIIARTPTGIQQIYTEQFVNTPKSQWGQSFLYVGLILLAVLAIVIFVTWVQQASR KIPIQYTRRASGASDSSYLPLKVNVAGVIPVIFASSFISTPQTILMAFASSHSEDDWYNI LTNVFNMQTTDGAILYTVLIVLFTFFYAFVQVNPEKLAENLQKQGSYIPGVWPGKKTQSY VSSLLIRLSVVGALFLGLVALIPLLASNIFGLDESIGLGGTSLLIVVGVAIQLFDQLEGL MMKREYIGFIRN >gi|269838497|gb|ACXB01000014.1| GENE 203 196940 - 197374 661 144 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116493144|ref|YP_804879.1| 50S ribosomal protein L15P [Pediococcus pentosaceus ATCC 25745] # 1 144 1 144 144 259 90 1e-67 MKLNELKPSEGSRTSRKRIGRGDSSGNGKTAGRGQKGQKARGKVRLGFEGGQMPLYRRIP KRGFTNINRKEYAIVNLDALNVFDEGAEITPEALLKAGIIKKQLSGVKILGNGEVSKKFT VKAQKFSASAVKAIEAAGGKTEVI >gi|269838497|gb|ACXB01000014.1| GENE 204 197401 - 197583 286 60 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116493145|ref|YP_804880.1| 50S ribosomal protein L30 [Pediococcus pentosaceus ATCC 25745] # 1 60 1 60 60 114 98 3e-24 MSQLKVTLIKSAAHRLPKQRKIVKELGLGRVNSSVVLPNNEATRGAIFHIAHLIEVEEVK >gi|269838497|gb|ACXB01000014.1| GENE 205 197597 - 198100 800 167 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116493146|ref|YP_804881.1| 30S ribosomal protein S5 [Pediococcus pentosaceus ATCC 25745] # 1 167 1 167 167 312 95 9e-84 MSKFIDPEKLELEDRVVAINRVTKVVKGGRRLRFAALVVVGDKNGHVGFGTGKAQEVPEA IRKAVETARKSLIEVPIVGTTLPHEAIGVYGGGRILMKPAAEGSGVTAGGAVRAVMELAG VDDVTSKRLGSNTPVNVIRATFEGLKSMRNAEEVAALRGVSVDHLAE >gi|269838497|gb|ACXB01000014.1| GENE 206 198122 - 198478 570 118 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116493147|ref|YP_804882.1| 50S ribosomal protein L18 [Pediococcus pentosaceus ATCC 25745] # 1 118 1 118 118 224 94 4e-57 MISKPDKNKKRQRRHARIRSKISGTAECPRLNVYRSNKNIYAQVIDDVAGVTLVSASTLD SEVSGGSKTEAAAQVGALVAKRAVEKKIENVVFDRGGYLYHGRVQALAEAARENGLKF >gi|269838497|gb|ACXB01000014.1| GENE 207 198531 - 199067 861 178 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116493148|ref|YP_804883.1| 50S ribosomal protein L6 [Pediococcus pentosaceus ATCC 25745] # 1 178 1 178 178 336 92 7e-91 MSRIGRKPVEVPAGVEIKQDGNVVTVKGPKGELTRTMSADIKMNVEGNVVTFDRPSDDNK MRALHGTTRANFNNMVEGVTNGFEKKLELVGVGYRAQLKGKKLVLNLGYSNPVEMEAPED LKVEVPDNTHINISGISKQRVGDFAAEIRAVRSPEPYKGKGVRYVGEYVRRKEGKTGK >gi|269838497|gb|ACXB01000014.1| GENE 208 199094 - 199492 650 132 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116493149|ref|YP_804884.1| 30S ribosomal protein S8 [Pediococcus pentosaceus ATCC 25745] # 1 132 1 132 132 254 97 2e-66 MSMTDPIADFLTRIRNANMVRHESLEVPASKIKKDIAEILKNEGFIKDVEYIDDDKQGII RVFLKYGKNNERVISGLKRISKPGLRSYVKADEVPKVLNGLGIAIISTSEGVITDKEARA KKIGGEVLAYIW >gi|269838497|gb|ACXB01000014.1| GENE 209 199526 - 199711 325 61 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116493150|ref|YP_804885.1| SSU ribosomal protein S14P [Pediococcus pentosaceus ATCC 25745] # 1 61 1 61 61 129 96 1e-28 MAKKSLVVKSERPAKFSTQAYTRCERCGRPHSVYRKFHLCRICLRELAHEGQIPGMKKAS W >gi|269838497|gb|ACXB01000014.1| GENE 210 199730 - 200272 867 180 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116493151|ref|YP_804886.1| 50S ribosomal protein L5 [Pediococcus pentosaceus ATCC 25745] # 1 180 1 180 180 338 96 1e-91 MANRLKEKFVNEITPDLVKKFDYTSVMQVPKIEKIVLNMGVGDAVANSKNLDEAVAELAL ISGQKPLVTKAKKSIAGFRLREGMSIGAKVTLRGERMYDFLDKLINVSLPRVRDFHGVSR TAFDGRGNYTLGVREQLIFPEIDFDNVNRVRGLDIVIVTTANTDEESRELLAEFGMPFEK >gi|269838497|gb|ACXB01000014.1| GENE 211 200300 - 200611 506 103 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116493152|ref|YP_804887.1| 50S ribosomal protein L24P [Pediococcus pentosaceus ATCC 25745] # 1 103 1 103 103 199 95 1e-49 MFVKVGDKVRVISGKDKGKEGTIKQTLAKKNRVVVEGINMIKKHQKPNNANPQGGILDIE APIDVSNVMLIDPSTNEPTRVGFKVVDGKKVRVSKKTGESIDK >gi|269838497|gb|ACXB01000014.1| GENE 212 200645 - 201013 596 122 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116493153|ref|YP_804888.1| 50S ribosomal protein L14P [Pediococcus pentosaceus ATCC 25745] # 1 122 1 122 122 234 97 4e-60 MIQQESRLKVADNSGARELLVIKVLGGSRVKFGYIGDVVVATVKQATPGGVVKKGDVVKA VVVRTKQGAHRADGSYIKFDENAAVLIKDDKSPQGTRIFGPVARELRDKDYMKIVSLAPE VL >gi|269838497|gb|ACXB01000014.1| GENE 213 201060 - 201326 431 88 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116493154|ref|YP_804889.1| SSU ribosomal protein S17P [Pediococcus pentosaceus ATCC 25745] # 1 88 1 88 88 170 97 5e-41 MSGERNARKVYQGRVVSDKMDKTITVQIDTYKTHPVYGKRVKYSKKYKAHDENNAAKKGD IVTIMETRPLSATKRFRLLDIVEKAVII >gi|269838497|gb|ACXB01000014.1| GENE 214 201353 - 201547 314 64 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116493155|ref|YP_804890.1| 50S ribosomal protein L29 [Pediococcus pentosaceus ATCC 25745] # 1 64 1 64 64 125 100 2e-27 MKAKEINELTTDEMINKEKEYKDELFNLRFQLATGQLENTARLKAVRKNIARIKTALRQQ ELNK >gi|269838497|gb|ACXB01000014.1| GENE 215 201537 - 201971 729 144 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116493156|ref|YP_804891.1| 50S ribosomal protein L16 [Pediococcus pentosaceus ATCC 25745] # 1 144 1 144 144 285 97 1e-75 MLVPKRVKHRREHRGRMRGAAKGGKTVTFGEFGLQALTSSWITNRQIEAARIAMTRYMKR GGKVWIKIFPHKSYTSKGVGVRMGNGKGTPEGWVAPVKREKVMFEVAGVPEEVAREALRL AAMKLPVKTKIIAREEVGGESDEG >gi|269838497|gb|ACXB01000014.1| GENE 216 201974 - 202645 1088 223 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116493157|ref|YP_804892.1| SSU ribosomal protein S3P [Pediococcus pentosaceus ATCC 25745] # 1 223 1 223 223 423 94 1e-117 MGQKVNPNGFRVGVIRDWQAKWYADKDFAKFLGEDIKIREFIAKQLTDASVSTVEIERAA NRVNISIHTAKPGMVIGKGGSEVEKLRKQLNELTGKRVHINIVEIKKPDLEAKLVGENIA AQLEGRVAFRRAMKQAMQRSMRAGAKGIKTQVAGRLNGADMSRVEHYSEGKVPLHTLRAD VDYAWVEARTTYGQLGVKTWVYRGEILPEAKEANNNSKEQGGK >gi|269838497|gb|ACXB01000014.1| GENE 217 202658 - 203005 512 115 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227896774|ref|ZP_04014579.1| 50S ribosomal protein L22 [Lactobacillus plantarum subsp. plantarum ATCC 14917] # 1 115 1 115 115 201 90 2e-50 MAEQVTSAQATAKTVRIAARKVRLVVDLIRGKSVAEAFAILKFTPRSASPIVEKVLKSAV ANAENNFDLDREDLVISKVFVNEGPTLKRFRPRAKGSASPINKRTSHITVVVSEK >gi|269838497|gb|ACXB01000014.1| GENE 218 203018 - 203299 477 93 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116493159|ref|YP_804894.1| SSU ribosomal protein S19P [Pediococcus pentosaceus ATCC 25745] # 1 93 1 93 93 188 95 2e-46 MGRSLKKGPFADEHLLKKIDAQKDQEKKSVIKTWSRRSTIFPSFIGYTIAVYDGRKHVPV YIQDDMVGHKLGEFVPTRTFRGHGGDDKKTSGK >gi|269838497|gb|ACXB01000014.1| GENE 219 203326 - 204174 1402 282 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116493160|ref|YP_804895.1| 50S ribosomal protein L2 [Pediococcus pentosaceus ATCC 25745] # 1 282 1 282 282 544 94 1e-153 MGIKKFKPTTNARRGMTQLDYAEITKKRPEKSLLESQSHSAGRNNYGRMTVRHRGGGNKR QYRIIDFKRIKDDVPATVKAIEYDPNRSANIALLVYADGVKSYIIAPKGLKVGDQVQSGP EADIKVGNALPLANIPVGTVIHNIELKPGKGGQLVRSAGTSAQLLGKEGKYALVRLASSE VRMILATNRATIGAVGNEEHELINVGKAGRNRYAGQRPHVRGSVMNPNDHPHGGGEGKAP IGRPSPLSPWGKKTIGKKTRNKHNKSNKFIVRGRKRGRLGNI >gi|269838497|gb|ACXB01000014.1| GENE 220 204194 - 204481 446 95 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116493161|ref|YP_804896.1| 50S ribosomal protein L23P [Pediococcus pentosaceus ATCC 25745] # 1 95 1 95 95 176 94 1e-42 MESRDIILRPVVTEASMALIDDKRYTFDVDPRATKTQVKKAIEEIFDVKVIKVNIMNVKG KLKRQGRYAGYTKKRRKAIVQLSEDSKEIQLFGEE >gi|269838497|gb|ACXB01000014.1| GENE 221 204481 - 205104 1000 207 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116493162|ref|YP_804897.1| 50S ribosomal protein L4P [Pediococcus pentosaceus ATCC 25745] # 1 207 1 207 207 389 96 1e-107 MANVSLFKQDGTQNGTVELNADIFGIEPNNDVVFEAVVMQRASMRQGTHAVKNRSAVRGG GKKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYSIPKKMRRLALKSVLSQKVLD ESLVVVDEFKFETPKTKDFAQSLSKLNVEKKALLVLEEDNESAVLAARNLSNVKIVEPTG INVLDIMNSDKLVITQKALSQVEEALA >gi|269838497|gb|ACXB01000014.1| GENE 222 205122 - 205760 1020 212 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116493163|ref|YP_804898.1| 50S ribosomal protein L3P [Pediococcus pentosaceus ATCC 25745] # 1 210 1 209 210 397 94 1e-109 MTTKGILGKKVGMTQVFTEAGELIPVTVIDTTPNVVLQLKTVENDGYAAAQLGFDDKRQV LSNKPEQGHVAKANTNPKRFIHEIRDVELGEDVKVGDKIAADIFEAGDFVDVTGTTKGHG FQGVIKKDGQRRGPMAHGSRYHRRPGSLGAIINRVFPGKKLPGRMGNKTVTIQNLEIVKA DTENNVLLVKGNVPGAKKSYVVVKSTVKNTSK >gi|269838497|gb|ACXB01000014.1| GENE 223 205788 - 206096 512 102 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116493164|ref|YP_804899.1| 30S ribosomal protein S10 [Pediococcus pentosaceus ATCC 25745] # 1 102 1 102 102 201 100 2e-50 MAKQKIRIRLKAYEHRILDQSADKIVETAKRTGATISGPIPLPTERTVYTVLSSPHKFKK AREQFEMRTHKRLIDIVNPTPKTVDSLMKLDLPSGVDIEIKL >gi|269838497|gb|ACXB01000014.1| GENE 224 206381 - 208474 2320 697 aa, chain - ## HITS:1 COG:SP0273 KEGG:ns NR:ns ## COG: SP0273 COG0480 # Protein_GI_number: 15900207 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factors (GTPases) # Organism: Streptococcus pneumoniae TIGR4 # 5 695 3 692 693 1016 73.0 0 MANKREFPLEKTRNIGIMAHIDAGKTTTTERILYYTGKIHKIGETHDGASQMDWMEQEQE RGITITSAATTAAWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVLDAQAGVEPQTET VWRQASDYNVPRIVFANKMDKIGANFDFSVQSLRDRLQANALPIQMPIGAEDDFEGVIDL VKMKADLYDEDELGTEWDTVEIPDQYREEAEKRRGEMLEILADVDENIMEKYLGGEEIST DEIKAAIRKGTLSLELFPVLAGSAFKNKGVQMMLDAVVDYLPSPLDVKPYGATDPDTGEE VQLIAGDDKPFAALAFKVATDPFVGRLTFIRVYQGTLESGSYVLNATKNKRERVGRLLQM HSNQRQEIPEVFSGDIAAAIGLKNTTTGDSLTDPDHPLHLESMQFPEPVIEVAVEPKSKA DQDKMDVALQKLAEEDPSFRAETNPETGETVIAGMGELHLDIIVDRMKREFNVEAKIGAP QVSYREAFTKQTSAQGKFVRQSGGKGQYGDVWIEFTPNEEGKGFEFEDAIVGGVVPREYI PSVEQGLKEAMNNGVLAGYPLVDLKAKLYDGSYHEVDSSEAAFKVAASIALREAAKTAAP VILEPVMKVEIRVPEEYMGDIMGQVTARRGRVEGMEAIAGAEEIHAFVPLSEMFGYATTL RSASQGRGTFTMTFDHYEPVPKSIQEEIIKKNGGKAE >gi|269838497|gb|ACXB01000014.1| GENE 225 208593 - 209063 786 156 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116493166|ref|YP_804901.1| 30S ribosomal protein S7 [Pediococcus pentosaceus ATCC 25745] # 1 156 1 156 156 307 97 4e-82 MPRKGPAPKREVLPDPIYNSKLVTRLINRLMLDGKRGKASKILYKAFDIIEKETGSQPTE VFEEAMNNIMPVLEVKARRVGGSNYQVPIEVRPDRRTTLGLRWLVNYARLRGEHTMSERL AREIMDAANNTGASVKKREDTHKMAEANRAFAHYRW >gi|269838497|gb|ACXB01000014.1| GENE 226 209079 - 209492 700 137 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116493167|ref|YP_804902.1| 30S ribosomal protein S12 [Pediococcus pentosaceus ATCC 25745] # 1 137 1 137 137 274 100 3e-72 MPTINQLVRKGRRSQSSKSKAPALNYGYNSMKKSQVNNPAPQKRGVATRVGTMTPKKPNS ALRKYARVRLSNLIEVTAYIPGIGHNLQEHSVVLIRGGRVKDLPGVRYHVIRGALDTAGV TDRKQSRSKYGTKKPKK >gi|269838497|gb|ACXB01000014.1| GENE 227 209773 - 210483 338 236 aa, chain + ## HITS:1 COG:no KEGG:SUN_1839 NR:ns ## KEGG: SUN_1839 # Name: not_defined # Def: type 4 prepilin peptidase # Organism: Sulfurovum_NBC37-1 # Pathway: not_defined # 7 232 9 240 246 74 29.0 2e-12 MLLFYHFLIFYFGCSWGSFLMATYQRRLTGDPITFPASHCDYCLTPLPYFCLFPIFSYCF SKGRCLFCGNQIPLKMLGLEVVSGIGFWLTIQLTTGEPFTLLTLLILSFLSVEDYATRQI HSQILLFPALFETYQSFSGVKFAALVLLTVLLLNNFENQRFFQKMGQGDLEVMVFLALLF GTSVTSGIICLACLIALVRIMVTKQRMVAFVPCLFAANWLVLTYINHSAPQLIMLR >gi|269838497|gb|ACXB01000014.1| GENE 228 210512 - 211459 1055 315 aa, chain + ## HITS:1 COG:SA2078 KEGG:ns NR:ns ## COG: SA2078 COG1957 # Protein_GI_number: 15927863 # Func_class: F Nucleotide transport and metabolism # Function: Inosine-uridine nucleoside N-ribohydrolase # Organism: Staphylococcus aureus N315 # 2 311 3 312 313 300 50.0 2e-81 MQKIYFNHDGNVDDLVSLILLLAFPDTEIVGVSAVGADSYVEPAVSASRKIIDLFGSPSQ LEVAQSDSRPVNQFPKEWRLSAFSFDDFPILNEHLNEGNPQTRLAKQPAHLDMVQKLQQS SVPVTLVMTGPLTDLARALAVDPTITAKIDRLFWMGGSMNGIGNVAEPAHDGSAEWNAFW DPEAVQTVFDSDLPITIVSLDSTNQVPLTTALRQRWAKQRQYPALDLIGQGYSLVHSFEA NSTYYLWDVLTTLISKYPELVSSKPLNVKVVSKGISAGKTYPDPAGRPVTFVTQVNAAAF YDRFDQLAQSLRSNF >gi|269838497|gb|ACXB01000014.1| GENE 229 211534 - 215175 3302 1213 aa, chain - ## HITS:1 COG:SPy0099 KEGG:ns NR:ns ## COG: SPy0099 COG0086 # Protein_GI_number: 15674322 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, beta' subunit/160 kD subunit # Organism: Streptococcus pyogenes M1 GAS # 1 1190 1 1191 1213 1793 73.0 0 MIDVNKFESMQIGLASPDKIRMWSYGEVKKPETINYRTLKPEKDGLFDERIFGPTKDYEC ACGKYKRIRYKGIVCDRCGVEVTKSKVRRERMGHIELAAPVTHIWYFKGIPSRMGLVLDM SPRSLEEIIYFASYVVVDPGDTPLEKKQLLTEREYRAKLDEYGNRFVAKIGGEAIQALLQ SVDLEKEANLLKEELKEASGQKRTRAVRRLDIIEAFIKSGNHPDWMVMDAIPVIPPDLRP MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPGIIVQNEKRMLQEAVDALIDNGR RGRPVAGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIDVGPSLKMNQMGLPVP MAMELFKPFIMKELVSRNLASNIKNAKRKIDRKDEEVYDVLEDVIKEHPVLLNRAPTLHR LGIQAFEPVLVSGKAMRLHPLACEAYNADFDGDQMAIHVPLSNEAQAEARLLMLAAHHIL APKDGKPVVTPSQDMVIGNYWLTMERAESVGEGMIFNDLDEVKLALQNGYVSIHTRIGVR ASSMPEKPFTDQQRQQILITTAGKMLFNDILPKDFVYLNAPTNENLVNGTPDEYFLEAGE DIHEQLNQRPLLSPFKSGFLSDVIAEVYKQYKVTETSLLLDRMKDLGFYRSTLSGLTVGI ADITNLPDKPAIIAAAHKKVATVTKQFRRGLITDDERYERVIGIWNDAKDEIQQRLMDTF DPQNPIFMMSDSGARGNISNFTQLAGMRGLMAAPNGKIMELPILSNFREGLSVLEMFIST HGARKGMTDTALKTANSGYLTRRLVDVAQDVIVREKDCGTDRGLLITAIAEGNEMIEPLY DRILGRYTMKSVINPETGKVIVGQNEMIDERSAQEIIDAGIQEVTIRSAFTCNTAHGVCE KCYGRNMATGDRVEVGEAVGTVAAQSIGEPGTQLTMRNFHTGGVAGNADITQGLPRIQEI VEARNPKGPAEISEVTGVVESIEEDPAEGTKEVTVKGETDTRTYSLPITARMKVAEGDYI HRGAPLNEGSIDPKKLIKVRDVLSTENYLLSEIQKVYRMQGIEISDKHVEIMIRQMLRKV RVMDPGDTDILPGTLMDIDDFKKDNYKTLIAGGIPATSRPVILGITKAALETNSFLSAAS FQETTRVLTDAAIRGKNDPLVGLKENVIIGKIIPAGTGMTDYRQIKPEVVGGNTEQPQTL SDVEKEMNETIEN >gi|269838497|gb|ACXB01000014.1| GENE 230 215206 - 218805 3695 1199 aa, chain - ## HITS:1 COG:SPy0098 KEGG:ns NR:ns ## COG: SPy0098 COG0085 # Protein_GI_number: 15674321 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, beta subunit/140 kD subunit # Organism: Streptococcus pyogenes M1 GAS # 1 1188 1 1187 1188 1722 71.0 0 MAGHLVKYGKHRTRRSYARIKEVLDLPNLIEIQTDSYQWFLDEGLREMFNDIMPIEDFAG KLSLEFVDYQLLEPKYTVDEAREHEANYSAPLHVTLRLTNHETGEIKSQDVFFGDFPLMT EQGTFIINGAERVIVSQLVRSPGVYYNLDVDKNNRNIWGATVIPNRGARLEYETDAKEVS YVRIDRTRKIPMTELVRALGFGSDEEIIDIFGGSDSLDFTLDKDVHKNPEDSRVAESLKD IYERLRPGEPKTADSSRSLLTARFFDPKRYDMAPVGRYKVNKKLSLKTRLLGQTLAETLA DPDTGEVLAQKGDVVDKDVMKKLAPYLDRQDFKMVTYQPSDEAVVPEPMTIQVIKIQDPN DPERELKMIGNGNIDLKLKHITPADIIASINYFFLLQQGIGSTDDIDHLGNRRIRSVGEL LQNQFRIGLARMERVVRERMSIQDAETVTPQQLINIRPVVAATKEFFGSSQLSQFMDQTN PLGELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLASYG KINRYGFIETPYRRVSWKDHKVTDRIDYLTADEEDQFVIAQANSPLNDDGSFVDDVVMAR HESDNIETSIENVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLLDPHA PLIGTGIEYKAAHDSGVALLCQHPGVVEYVDAREIRVRRDDGALDTYKLMKFRRSNGGKN YNQRPIVRVNDKVDADDVLADGPSMELGELALGQNPLIAFMTWQGYNFEDAIAINERLVR DDVYTSIHIEEYESEARDTKLGPEEMTREIPNVGEDALRNLDQDGIVRIGAEVQDGDILV GKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVQDVKIFTRENGDELSP GVNMMVRVYIAQKRKLQVGDKMAGRHGNKGTVSVVIPEEDMPYMPDGTPIDIMLSPMGVP SRMNIGQVLELHLGMAARNLGIHMTTPVFDGARDEDIWEAVAEAGMDSDAKSVLYDGRTG EPFEQRVAVGVMHYMKLAHMVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWAL EAYGAAYTLQEILTYKSDDIVGRVKTYEAIVKGESIPRPGVPESFRVLVKELQALGLDMK VLGEDKQEVELRDMDEDDDEVVNVDALSKYAEKQKAANANEADSSTTESTPVETENNQN >gi|269838497|gb|ACXB01000014.1| GENE 231 219034 - 221505 2332 823 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 5 814 6 813 815 902 57 0.0 MENLFTPSARNVLIIAQEQAKRFKHPAVGTEHLLLALTIENNGVAHSVLEQFNVTEIDVI EEIEQFTGYGNLRLTKNDYLPYSPKAKEILANAGDQARQLKAAKIGTEHILLALIQDETI LSSRVLLALDTDVADVRKVTLRKLGVNPATQSRRAKQRATTTKGTPTLDSVARDLTAMAE AGKIDPMIGRENELRRVIQILSRRTKNNPVLIGEPGVGKTAIAEGLAQRIIADDVPEDMK NKRLMMLEMGALVAGTKYRGEFEDRLKKVIEEIRQDGKVILFIDELHTLIGAGGAEGAID ASNILKPALARGELQTIGATTLNEYQKYIEADAALERRFAKVEVDEPTQAEAVQILQGIR PKYEEHHKVRITDEAIQQAVNLSARYISDRFLPDKAIDLIDEAAAKIRIDAAEKQSKRET DEDKLARLKADKEAAIDRQDFETAAEIRKKEMKLRKKVERAAARQAEAEQPVEYKLQETG EDVAQIVSDWTGVPVTQMKQSESERLVNLEKILHEHVIGQDEAVSSVARAIRRARSGLKN PKRPIGSFMFLGPTGVGKTELAKTLANVMFGSEDNMIRIDMSEYMERFSTSRLVGSAPGY VGYDEGGQLTEQVRRKPYSVVLFDEVEKAHPDVFNLLLQVFDDGFLTDSKGRRVDFRNTI IIMTSNLGATALRDEKSVGFGAQNMADDYQAMAAKVKEVLKQSFRPEFLNRIDETIVFHS LTKPELHQIVKLMSKDIIRRMSAQGINMNFTPAAIDVVAEAGFDPEYGARPIRRALQTQV EDQLSEMLLAGQVKVGDDVTIGARNHKITFKVKDAKPVSSTSK >gi|269838497|gb|ACXB01000014.1| GENE 232 221532 - 221996 357 154 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764774|ref|ZP_02171828.1| ribosomal protein L14 [Bacillus selenitireducens MLS10] # 4 154 2 153 158 142 46 2e-32 MQGQNISDIIERYLKEILADSEEVEIRRSEIADQFDVVPSQINYVIKTRFTIQNGYLVES KRGGGGYIRIEKVKLLDDIDVLDSLIRVIGDSINERDAISILSSLYEDAVLSKREANLLA ATIAKSTLNIGDRKLEDQIRAKIIIGVLNHLRYE >gi|269838497|gb|ACXB01000014.1| GENE 233 222234 - 224039 1868 601 aa, chain - ## HITS:1 COG:L0199 KEGG:ns NR:ns ## COG: L0199 COG0028 # Protein_GI_number: 15674026 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] # Organism: Lactococcus lactis # 6 553 4 546 567 491 47.0 1e-138 MSEKTVPASVAMLRVLQAWDIKRVFGYPGGSFNSTMNALDLEKDRIQYVQVRHEQVGALA AAAEAKLTGKIGVAFGSAGPGAVNMLNGLYDAKEDHTPVLALVGQVPHSNMNYDFFQEFP EVPMFQDVAVYDRCVMTPESLPYVVDKAIRAAYKNRGPAVVVIPNDFGYVQIPDVNYAST ALLEKQTPKQTPTDEEVDQFLKMVREAKRPVFHVGSGIKDHQDLLKKVAEKLQIPVTITG LAKGKVDDDWEGNLGTTNRAASKAADEAFATADLVIALGADFPFANLVYRTHDFKFVQID NDESQFGRHHFLDLGIWADSGKFLEKVLERSEAVENRPFYQATVADMQDWKAYLNKLMKK ADGPLSYEQIYREINRIADKDAVFGIDTGDNIINSFRFLDLKGDKQWTISALFATMGYGI PAAIAAKLAYPDRQVFSISGDGAASMVIHDLLTEVKYHLPIINIITSNQTLNFIKSEQDD IQMNHSGIDLEDADYAKIAEAMGAKGITIRTLDELPAAFDKALEYQKAGEPVVIDAKITD QRGLPVEELEFDNQAANFTEKISAAYQATHGEKSVSDFFSDYDGAELKPLTDYFAKFGVE K >gi|269838497|gb|ACXB01000014.1| GENE 234 225080 - 225208 96 42 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGEHLPYKQEVTGSSPVSSIEIILSGFKGYMRAWRNWQTRKI >gi|269838497|gb|ACXB01000014.1| GENE 235 225463 - 226743 1423 426 aa, chain - ## HITS:1 COG:L150515 KEGG:ns NR:ns ## COG: L150515 COG0172 # Protein_GI_number: 15673694 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Seryl-tRNA synthetase # Organism: Lactococcus lactis # 1 423 1 422 423 535 64.0 1e-152 MLDLKMIRNHTDEVKEKLATRGVQPETIDQLLAKDNQRRELIVKSESLKKVRNDVSDQIS QMKRNHEDANEPIQKMRKVSQEIKELDEQLEKVAAEVEDQAAHLPNLPHPDVPVSLTEEG SVELRKFGTPRKFDFKPKAHWEIGEALGILDFERAAKVAGSRFVYYVGDGARLERAVYNF FLDQNVAAGFTEEITPYMVNDASMYGTGQFPKFKETHAGYEIKDEQLTLIPTAEVPLVNF YRDEILDEDQLPINVTALSPAFRSEAGSAGRDTRGLIRMHQFNKVEMVKITKPEDSWQEL EKLTRHAETLLQKLGLPYHVITLTTGDMSFTAAMTHDLEVWIPAQNKYREISSCSNTTDF QARRAQIRYRDENGKLQYVHTLNGSGLAVGRTVAAILENYQNEDGTVTVPDVLIPYMQGT KVIGKN >gi|269838497|gb|ACXB01000014.1| GENE 236 227026 - 227658 601 210 aa, chain - ## HITS:1 COG:L93481 KEGG:ns NR:ns ## COG: L93481 COG1428 # Protein_GI_number: 15672477 # Func_class: F Nucleotide transport and metabolism # Function: Deoxynucleoside kinases # Organism: Lactococcus lactis # 1 210 3 212 217 271 65.0 8e-73 MIALSGPIGAGKTSLTELLTQHWGSDAYYESVDDNKILPLFYKDPKRYAFLLQIYFLNKR LDSIKQANDGFRSVMDRSIYEDSLLFHLNADLGRATETEVKIYDSLLSNMMQELPRLSYK KNPDLLIHIDISFDTMLKRIKKRGRSYEQIENDPSLYDYYKELNRRYVSWFENYDQSPKI RIDGDKYDFVEEPSARQQVIQLVEEKISQI >gi|269838497|gb|ACXB01000014.1| GENE 237 227735 - 229198 1311 487 aa, chain - ## HITS:1 COG:lin0791 KEGG:ns NR:ns ## COG: lin0791 COG0833 # Protein_GI_number: 16799865 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Listeria innocua # 6 476 2 480 486 575 63.0 1e-164 MAQLQKQASGNHVQRALKTRHISMISLGGSIGTGLFVASGLAISQAGPGGALLAYVGMGI MVYFLMTSLGEMATYMPVSGSFATYASKYVDPAFGFAMGWNYWFNWAITVAVDISTIALI MKFWLPNVPGWIWSLIALALVVLINALTVKAFGETEYWLALIKVVTVFVFLAVGTLTIFG IMGGHATYLENFVYRKAPFVGGIPAILSVFVVAGFSFQGTELIGITAGESETPESSVPKA INQVFWRILLFYILAIFVIACLLPYTSPDLLGTSASDVSISPFTLVFRRAGLAGAAGVMN AIILTSVLSSANSGMYASSRMLFSLAKQGYAAKIFGRTTKRGIPYVALIGTTVVGLLTFI TSIMGTKIYAWLVAASGLTGFIAWMGIAVSHWRFRRAFVKQNHDLSELKYRAKWFPFGPL FAFVLSIVVILGQDINSLINLNWQAIGITYMSVPLFIVLFAYYKIKYKTKLIPLEEIDLS RPNITKK >gi|269838497|gb|ACXB01000014.1| GENE 238 229357 - 229464 96 35 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MMSNPGKMIKHLGPREKGNEAEMTADLILHDLGLG >gi|269838497|gb|ACXB01000014.1| GENE 239 229516 - 230022 515 168 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116493177|ref|YP_804912.1| acetyltransferase [Pediococcus pentosaceus ATCC 25745] # 1 167 1 164 166 202 59 1e-50 MKFKLRYFATSDFADYQVLMNNEKLARLAGMQVLKTELEQWLAFKGMVGSPNFLAIVNEE NRLSGGIFIFQQAEEAVFELGYLLAEEYWNQGIMSRAVHFALKSLRNRQSAMMSTVKVQA NVLTDNQASQRVLEKNGFIRQPGVFENVSGYDGRARKEYLYELNLKLA >gi|269838497|gb|ACXB01000014.1| GENE 240 230124 - 230918 719 264 aa, chain + ## HITS:1 COG:CAC2917 KEGG:ns NR:ns ## COG: CAC2917 COG0657 # Protein_GI_number: 15896170 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Clostridium acetobutylicum # 29 264 34 269 272 139 33.0 5e-33 MQIIKTPLNQVNPQSQAELISYVDPSLTDALNPALIFVPGGSYTHIDFKQSEKVALRFLS LGFQVSILRYSFVDEVQPLFPAPLLETAQAIATTKQNAAQWHVDRQKVMLMGFSVGGHVV ANYNNLWSSDWLQAQTHLSAEDLKPAATILGYPVITPFDGFPDQPTLAQWTNNPDEIAAD QHVTGDNAPTFIWATTDDQLVSSKNAVDYFLALQAHQVPTELHLYHHGPHGMALADETTA YDERHQDSRIADWIASALAFLREL >gi|269838497|gb|ACXB01000014.1| GENE 241 231085 - 232335 1049 416 aa, chain + ## HITS:1 COG:BH3670 KEGG:ns NR:ns ## COG: BH3670 COG1316 # Protein_GI_number: 15616232 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus halodurans # 59 352 10 303 304 175 33.0 2e-43 MSEDSRNSNLSRFSGNQFNSVPEENDPNAEEQNNPTSGSRQKRQRNPRPPKKWHPWRWVV CAVIALLLIVFGVKKWYTAKNAVDSIFDSARIQKARDVSSELKHGKPISILLLGTDTGAL GRNYRGRTDTMIVATLNPKKKKMTLTSIPRDTVMSIPGYSSYSPSKINSAYDFGGAGTAI RAVQKLLNVPIDYYGLINMGGLEKIVDGVGGIDVTPKLTFKYGNADVKKGVKIHLDGKAA LDYSRMRYDDPKGDYGRQTRQRQVLMAILRKSDSITALLNQNFLNSLQKQTKTDLTFNEL LALSSNYRVATHHLKSTHLQGEGITINGGSYEYVPQKERQRVTNFIRNALDLPHKTTGTT GISSMYTGEVEENDATSGADDNSSTSSNYNDPNNQATPTPTTPSTGTGATTGYQGY >gi|269838497|gb|ACXB01000014.1| GENE 242 232313 - 232453 60 46 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MWGVLILEASQFKQNQCRILNSALQMFKSNEVVLIGYLLLNSLDIP >gi|269838497|gb|ACXB01000014.1| GENE 243 232516 - 232974 520 152 aa, chain - ## HITS:1 COG:lin0586 KEGG:ns NR:ns ## COG: lin0586 COG3610 # Protein_GI_number: 16799661 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 3 148 7 152 152 115 41.0 2e-26 MQLLLEFVMAGIATVGFGIIINIPHRALLTAGIIGGISWGIYWEMLQFHLGLALSSLTAT TVIALLSLFAARRLKMPMIVFSIPGIVPLVPGGQAYQMIRNFALSNTRLATHFMLEVGVI AGSIGIGFLMAEFIDRLQRKLVVRFKKVRENK >gi|269838497|gb|ACXB01000014.1| GENE 244 232993 - 233736 589 247 aa, chain - ## HITS:1 COG:lin0587 KEGG:ns NR:ns ## COG: lin0587 COG2966 # Protein_GI_number: 16799662 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 7 246 9 248 250 235 52.0 6e-62 MRDLKKVIKTCLLAGRIMIENGSEMSRAEDTMKRIAINSGIDDLQLFGTITGLIVSVPNS LTSQVEQITRRAFDLEKVSAVNSFSREYAAKQITLDEFYEKLSTLDEATPFFPFWLQVLG AALVSGPLMVAFSGNLVDLGVTMLVGALGYTVFYLSNRLLNVKYISEFFASIVIGILAVL IVRMGWGQSLDDIIIGSVMPLVPGVPLTNAVRDILNGHLVSGPARGVEALLSACAIGFGI AFVFRFI >gi|269838497|gb|ACXB01000014.1| GENE 245 233885 - 234085 304 66 aa, chain - ## HITS:1 COG:L172505 KEGG:ns NR:ns ## COG: L172505 COG1278 # Protein_GI_number: 15672150 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Lactococcus lactis # 1 65 1 65 65 95 76.0 1e-20 MEQGTVKWFNADKGFGFITREDGSDVFVHFSAIQSDGFKTLEEGQSVSFDVEESDRGPQA VNVEKN >gi|269838497|gb|ACXB01000014.1| GENE 246 234295 - 235197 887 300 aa, chain - ## HITS:1 COG:PH0896 KEGG:ns NR:ns ## COG: PH0896 COG1230 # Protein_GI_number: 14590752 # Func_class: P Inorganic ion transport and metabolism # Function: Co/Zn/Cd efflux system component # Organism: Pyrococcus horikoshii # 20 289 17 285 295 234 44.0 2e-61 MEFKDDKAQHGLRFLEATVLNLVITAVEFGGGLLSGSLALLSDAIHNLGDSASIVMAYVA SRISQRNSNQSKTYGYRRAEILSSYFNAIFLLVMSALLIWEAMRRFAHPHPVNGGLMLVV AVVGLLANGFSAWLLHSGSHNNLNLKATYLHILSDAFASGGVILGALIIKIFHVVWADPL MTIVVSVYIAYKTIPIIIEATNILMEAGPRLDYRAVKATVLSVPGVVNIHHVHTWMIDEH RIMLTAHIALEDQELSEVEPIYQKIRKLLKDKYNIEHATLQAEVDRGKEYQIFTTNKDDV >gi|269838497|gb|ACXB01000014.1| GENE 247 235426 - 236106 636 226 aa, chain - ## HITS:1 COG:SP0489 KEGG:ns NR:ns ## COG: SP0489 COG0671 # Protein_GI_number: 15900403 # Func_class: I Lipid transport and metabolism # Function: Membrane-associated phospholipid phosphatase # Organism: Streptococcus pneumoniae TIGR4 # 15 208 13 205 216 72 24.0 7e-13 MLRDMPNVPKRFVILAALVVIVLVAGVKMQSMFMLFVDQLFSSAVQSEFMMFLEPVMRLI TMIADTKLGLIYAVLIAAYLWLRQGQRVDAIWVICTMFGGAVVAYLLKEFVKRPRPTIAQ IIPETGYSMPSGHTFEAFLVLAFLYLFFVRPMAESSLKKACTAGLVIWQILVIWSRIFLG AHYLTDTLVAVGLGTVWLWVAIMLYHSLYDTIANYIEPSVGRHHQR >gi|269838497|gb|ACXB01000014.1| GENE 248 236119 - 236778 734 219 aa, chain - ## HITS:1 COG:BH2835 KEGG:ns NR:ns ## COG: BH2835 COG1418 # Protein_GI_number: 15615398 # Func_class: R General function prediction only # Function: Predicted HD superfamily hydrolase # Organism: Bacillus halodurans # 9 216 7 212 215 165 46.0 6e-41 MSQDNVEQLNQINHFVMKKLQNDLTGHDYAHIQRVVKMAQKLMDDRDEKINRFVVFAAAT LHDVIDEKIVEQTKTAEDEVTRFLRELAVSDYDIAHIFDIITHMSFSDNLEHKYKLSLEG QIVQDADRLDAIGAIGIARTFYYGGAHGHIMYDPEIAPREVMTHAEYRQNQSVINHFYEK LLKLKDEMNTPLAQQIAEKRTQRMESFLTEFIAEWNQEN >gi|269838497|gb|ACXB01000014.1| GENE 249 236775 - 238337 1503 520 aa, chain - ## HITS:1 COG:SPy1633 KEGG:ns NR:ns ## COG: SPy1633 COG1418 # Protein_GI_number: 15675508 # Func_class: R General function prediction only # Function: Predicted HD superfamily hydrolase # Organism: Streptococcus pyogenes M1 GAS # 37 516 59 535 535 310 40.0 3e-84 MVTILIVILLVLALGGGFWRRAQKHQEVLREARQAAKKLTAQQQEATRQAVQEYQQKSHQ ETEQYRMTISQELDDDQRDNQRKGAWIEQRMKLLEQKRNALANRANLLSQKRHELQDRKN TVKETLKQADQLIAERWQTLQNVADLPEAQARDAVLQATKEDAEQSQEEFVNNAATELES SKEREAEDLIALAMEHSNVVSVQYENHRGLVADNQEYLGKIIGNSGQNVRAIEALTGVDV IIDDQTKEVIINGYDPVRRATAMEVIKSIKGEKRVLPDTIERLVNQANRTIDERIRHYGE NAVRELKLKHVAPDLIKIIGRMHYRTSYGQNILEHSIETAKLAGIFATELGENAALARRA GLLHDIGKSIDRDIEATHVELGVELTTKFRENPVVINTIASHHGDVESKYVIADLVEAAD AISGARQGARSESAADYLQRIKSLEGIANDQPEVQESYAIQAGRELRVIVLPKETNDRSI KNVATHVKDRIEDEVTYPGQVKVTVVRKLEIVEYAEKKQA >gi|269838497|gb|ACXB01000014.1| GENE 250 238485 - 238916 373 143 aa, chain - ## HITS:1 COG:no KEGG:PEPE_1449 NR:ns ## KEGG: PEPE_1449 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 7 142 1 136 137 202 75.0 4e-51 MIEEVVMTTEGNFENINVTLGDPAFDAMLMQLNHEVNSSNASEYNFMGNLTQEVGDQVWA VPAYLSEDYALFFLYTAIETGDWVVAFSEGTQTDGQFNLGTPLTTGQGLNRLYEKNPNRA KMVLSFVNDLEKAGEGMWRMVEL >gi|269838497|gb|ACXB01000014.1| GENE 251 238952 - 239830 293 292 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit [Lactobacillus helveticus DPC 4571] # 52 282 54 279 285 117 34 5e-25 MRYRIENNLEEIISAQKVLQRLGASQRLMQKIRQAGRLVDENERTVALKDKLMPFEPFWI ELPDEDSDPAVPVSDQPLDVIYEDDNWLVVNKPAGLTAVPGPSNRTDTLVNRVKGHWQAN GAVNLVPHLITRLDRFTSGITLVARHQVANSLLSEQVRHRKIKKTYLALVDGVVSAEKGT FNQPLGLAADGIHREVQEGGQSATTSFKVVQRFANQTLVQVHLKTGRTHQIRVHFANAGH PLVGDQLYGGPMDRGIERQALHAQSIRFFDPFTNQKLEFTAPLPADLQAIGM >gi|269838497|gb|ACXB01000014.1| GENE 252 240120 - 240674 490 184 aa, chain + ## HITS:1 COG:no KEGG:PEPE_1451 NR:ns ## KEGG: PEPE_1451 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 184 1 184 184 284 85.0 9e-76 MKDFFSIKGVFSVRNLTMMALLAALDVVLARYTTIHLTPQFTLVSFEYIPSAIVAGLFGP WAGIVFGLVSDTVGYFSNPVGPYLPVWAISAMVGNVIQSVFLYQGKFDWWRILIARLLVM LVVTMGLNFIWQSIYFGAAAAAYYNSARIISDIIQLPIQVVLIRVFGQLALRIVTRMNAS RQSV >gi|269838497|gb|ACXB01000014.1| GENE 253 240746 - 240892 258 48 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKSPYNSFARARKVSGKRERRRRQARIVAIQKFAKGKTDTIAETPKVK >gi|269838497|gb|ACXB01000014.1| GENE 254 240997 - 242325 372 442 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 12 427 9 418 447 147 26 4e-34 MKEFESQVLQEERLSTPKTILLAFQHLLAMYAGDILIPLLIGATLKFNAQQMTYLISVDI FMCGIATFLQIKRTPLTGIALPVVLGSAVEYLAPMEHIGNTFGWGYMYGGVIAAGIFVFL ISGLFARLRKFFPVVVTGSLITLIGFTLIPVAFQNIGGGNVADPHFGSASNLILGFVTAL IIILIQVFTHGFVKRISVLIGIVAGSVIAVLMGLIDPTPINQASWLKIPLPFYFATPKFE WSSILTMLLAAVTCMIESTGVYFALADITERKLTADDLKRGYRSEGIAAILGGIFNTFPY STFSQNVGIVQLSGIKKLRPIYFSAGMLLILGLIPKFSAIATLIPTSVLGGAMLVMFGMV GAQGIKMLAAVDMTVNNLLVIAVSIGVGLGVTTQPTLFHILPATVQTILDNGMVVGCVTA IIMNLLLNGSKGLDETRESSAE >gi|269838497|gb|ACXB01000014.1| GENE 255 242525 - 243931 1580 468 aa, chain + ## HITS:1 COG:L324 KEGG:ns NR:ns ## COG: L324 COG4690 # Protein_GI_number: 15673540 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidase # Organism: Lactococcus lactis # 1 468 3 474 474 707 70.0 0 MNKRIHGSCTTILVGKKASIDGSTIISRNDDGHEALDPQRFVVVNPDEQPQNYRAVISGV EVKLPDNPLRYTSMPNSILTNGIWPAAGINSENVAMSATETITTNSRILGIDPYVENGIG EEDIVTLVLPYIHSAREGVLRMGELLEEYGTYEPNGIAFSDKEEVWWLETIGGHHWAAVR IPDDAYVVAPNRMNIDHFDFNSDDTLCSADLKDLIEKYHLNPDYDGYNFRHIFGSASIKD TVYNNPRTWYGQKYFNPEIEHDPMDQDLPFICHADKKISIEDVKFVLSSHFENTEYDPYG NGTEDQKKLFRPIGINRNHNVHILQIRNDVPAEIAGIHWLAYGANTFNTVVPFYANVNDT PDVYKNATGTFDLNNMYWLSCTTALLGDTDYDLYVDLRNTFELEAMGAYRHIQNETDQNF ATQSDPVKYLEAANEKLAHESFTRQTKLLGEMVTLGSAHMKLRYNLND >gi|269838497|gb|ACXB01000014.1| GENE 256 244093 - 245331 1078 412 aa, chain - ## HITS:1 COG:L16848 KEGG:ns NR:ns ## COG: L16848 COG1668 # Protein_GI_number: 15673756 # Func_class: C Energy production and conversion; P Inorganic ion transport and metabolism # Function: ABC-type Na+ efflux pump, permease component # Organism: Lactococcus lactis # 2 405 3 403 453 158 28.0 2e-38 MNKLMIIAKQVLKKNVTSFSWWSLVLLPLIIAGVMVGIGIYSGHKDSKATVAVVAPSEIV QELSATQHADLRYRGYSSKKDAERALKSTKVDGILTIDARMQHSKLTVNKEGADVEETNI QQDLAVLNTANTAKALGLSQQQLAQLLRTPELTTKTVSLKKGRLTTINSGNRQLRMIVAQ LIALPMYIFLISYGNVIAQEIGTEKGSRIEESILTAVKAKTQFYGKLLGVGILTLIHLLV YLVVGVVVWLTSGQSGKLHDLINQIPWHEIDLPFLSISIGFFILGVFTYAILAALCGSLV TNQEQIAQAAVPATLIAMVGFFAAIQAPDSQGMVTTVLSYLPFTSPMVMPVRYGVDQASL SATGVAGIINVIFLLVFCWLSANAYERNVLVYNNKGIFKALRHSLQMQRKRH >gi|269838497|gb|ACXB01000014.1| GENE 257 245333 - 245923 430 196 aa, chain - ## HITS:1 COG:lin2244 KEGG:ns NR:ns ## COG: lin2244 COG4152 # Protein_GI_number: 16801309 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, ATPase component # Organism: Listeria innocua # 3 196 104 297 300 186 50.0 3e-47 MKKRDILAQLDEWMDRFQVKGKRKEKIKNLSKGNQQKVQLIAALIFMPKLAILDEPFSGL DPVNAGLLKAGIRFLRQNGTAIIFSSHDMTNIEDLSDQLVMLKDGKVVLNGKVNEIRQQF GDTRVYLQTNRFTQPELAAIPGVQRVSRRADQFILELETPAVGHRIFELVTKDGYLKEFS QQPPTLDEIFKIKAGD >gi|269838497|gb|ACXB01000014.1| GENE 258 245889 - 246224 425 111 aa, chain - ## HITS:1 COG:L18206 KEGG:ns NR:ns ## COG: L18206 COG4152 # Protein_GI_number: 15673757 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, ATPase component # Organism: Lactococcus lactis # 2 95 3 96 310 124 60.0 5e-29 MLEIDQVSKYFGTYCAVSEESFVVRPGEILGLIGQNGAGKTTTFRMILDFLTPDEGQIRW DGKPINQLKRDWIGYLPEERGLYPKMTIEQQVLFFWPVTRDEEARYFSSAR >gi|269838497|gb|ACXB01000014.1| GENE 259 246427 - 246771 418 114 aa, chain - ## HITS:1 COG:no KEGG:LJ1411 NR:ns ## KEGG: LJ1411 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 6 113 11 127 129 61 39.0 9e-09 MSANINIGKLIKQVRKESGLTQEELAEKSDLSVNFISRIERTDNQNISWKNIEAIAEALG LSTIELLQVNENRQQHRGLYLTKLMRILEEMNELEAEELSKNIIDIIELLQRKK >gi|269838497|gb|ACXB01000014.1| GENE 260 247616 - 249541 1927 641 aa, chain - ## HITS:1 COG:no KEGG:JDM1_2245 NR:ns ## KEGG: JDM1_2245 # Name: not_defined # Def: cell surface protein precursor # Organism: L.plantarum_JDM1 # Pathway: not_defined # 41 361 89 391 984 84 26.0 1e-14 METKKRFKMYKSGKKWLVAAIVAGGMATAGSVVSANADEVATANAPAQTPQTEQVQESTA AVTSATVKADSSAANSVSAASRKVNSSAAPTSATVSSSVASTSVVNKAKDSQIAKSAVAD DKKDINEFTAHNPEDSQKDVKNNDGTKESTKVTQDNKKDSGTVGTVNWNLDNQGTLHLNS GDLEHGRYDKNWNKNDVKVIQFDGEVTWNFETFGDYFFSEYENLTKIINADKLSFGSSET ISFADNPQLKTIEGIEKWDTSHLTRLASVFQGDSSLNNLDLSKWDTSQVENMGIMFAQCR SLSNLNVKGWDVSKVHSFNSMFNMTTSLSDLDLSSWKNSAISEGHDYRSMFTGSGIEHLN LGGLYIDSNLDFTDSNYLKSVTVGPVTSNVYFVLRAGDDKKWKIESTGKTYTSDEIEDFL NKNGSDKAETYTLVTNDDNQPNNDKDDSHSNNSGQNDGKNDTNNNKPGQNDGKNDTNNNK PDQNDGKDDADGNKPDQNNGKNNADSNQPAQNDGKNNAGSNASNANDVNNGKHANGDDTA ANNAQATDANNQQNGGVIVDPNGGINNGNASDYAGAQSNAMFAPQDRANGQTRSKQSNQA TAKTLPQTNEKKQSTTLLSVIGLAMLSLLAVVGLVKKQRKN >gi|269838497|gb|ACXB01000014.1| GENE 261 250184 - 250636 539 150 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|270291167|ref|ZP_06197390.1| ## NR: gi|270291167|ref|ZP_06197390.1| predicted protein [Pediococcus acidilactici 7_4] # 1 150 1 150 150 258 100.0 1e-67 MNFIKQHKWIAIIVVILIAIAGGYRYANRGQYAVQNKVMTVGMRADDDVTYDKSAKAVFK PDHEVKFSGNQDSMDGFGKVKWSAKGSKVFLKSWGVRLATIDTAHKVTFKGHPAYRANID LKKVLAGAGYDDASELVDDDYSVTLYFVLK >gi|269838497|gb|ACXB01000014.1| GENE 262 250652 - 251845 1145 397 aa, chain + ## HITS:1 COG:no KEGG:STER_0131 NR:ns ## KEGG: STER_0131 # Name: not_defined # Def: hypothetical protein # Organism: S.thermophilus_LMD9 # Pathway: not_defined # 106 364 303 535 571 64 27.0 7e-09 MEKFKTFITQNKKLVYGVIAIIIIAAGAKIGYDYHSNNIISRIEVKFYGYNGHGDAAISN AESVNKYMTRRVLQKDHIKKDVINKIVSHPDTFDYSMLSSEDQYKIQSSIEDLSSTRLEF KGKSTELKNGDKVTVTFKNSNSELPFRDGKKTFTVKGLKKTTKVSSNKIFNQLKIKALGI NGKGQIALSSKNSDLINSNIKVKNNGHLSNGDVISLTLPKAAFKDSSGKHQYTGSRTFKY KISGLIDSKSITNVDDITDATDTVMSDYTDDKQFADEKYTSKFVNLYVTPYNENEEEYYD DDDNEVSSKVEVADASENSTSSSNKLSIAAIYSVNSSDADDDDEPENVAVEVNNLSLNDG KLNIKDKKITSDDNVSTLSDSIKTYERNLEVSGLKLK >gi|269838497|gb|ACXB01000014.1| GENE 263 252012 - 252659 767 215 aa, chain + ## HITS:1 COG:no KEGG:LEGAS_1682 NR:ns ## KEGG: LEGAS_1682 # Name: not_defined # Def: hypothetical protein # Organism: L.gasicomitatum # Pathway: not_defined # 1 165 1 165 174 151 45.0 1e-35 MVQSAVVENDSDAFSVSLLAFWVKGSIALDDAFLRVNMPNTVFFGLVPAGKQKDSSPLSG ITNVYTSKSYKLSSIFLGLLIAIIGVALMGSSFFSALIAIIVGVLLIGSGIRTTFNYERS GISKTIDLPFFEAHHSEELEEKLTQKLATYQADRNVRAQTDRTIQQGAQSTQQIVNAVSG DANNAASSASAFCGSCGAPLAQGAKFCNKCGAQAN >gi|269838497|gb|ACXB01000014.1| GENE 264 252955 - 253599 806 214 aa, chain - ## HITS:1 COG:lin2178 KEGG:ns NR:ns ## COG: lin2178 COG2344 # Protein_GI_number: 16801243 # Func_class: R General function prediction only # Function: AT-rich DNA-binding protein # Organism: Listeria innocua # 5 203 7 205 215 208 50.0 6e-54 MANFKLSIPTTRRLPLYYRYLRRLSDQKVEKVSSAMLAEYLQIDAATIRRDFSYFGQMGR RGYGYDVQKLLELFDDALRQDINANVALVGVGNLGRALLNFKFHRVGNARITAAFDVDPK LVNTVQNQIPVYDIKNLKEQIKEQQITVAILAVPAEKAQELTDQLLEVGIQGILNFTTVP LTVPEKVIVQDVDLSVELQSLIYGINRREIEELE >gi|269838497|gb|ACXB01000014.1| GENE 265 253614 - 254591 857 325 aa, chain - ## HITS:1 COG:lin2030 KEGG:ns NR:ns ## COG: lin2030 COG1680 # Protein_GI_number: 16801096 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Listeria innocua # 6 321 3 322 335 145 32.0 1e-34 MTEQMHQIHQVIEKGIQQHYINGASYSFILPNEIESRYEGVQGGKEGNVCLDPSMIYDVG SMTEVIATTTRIFQLLAIQEIRLKDPIKKYLPGFSNPDVLVLHLLTHTSGIPVEIPGMYR LTGIEFINALYMVDTDFEPGDHVQVSPLNFALLGIIIRTVDGSIDRAVQDKILYPLAMTN SGFNLNRPKMRFVPTRNDPKRGQIQGQVEDQLGLLLNGESGHAGLFSTLNDLTVFTEMMI NRGSYQGKEILDPQLFDGIKKVDVDGQSLGWCRFKENRDVFYGSSPTGLIAFNNQNKHGL VLLHDYIEDEKVHVAMRDEILKVVQ >gi|269838497|gb|ACXB01000014.1| GENE 266 254607 - 255644 708 345 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227425790|ref|ZP_03908856.1| SSU ribosomal protein S18P alanine acetyltransferase [Atopobium parvulum DSM 20469] # 2 336 475 816 832 277 44 4e-73 MEQDSLILAIESSCDETSVAVIKNGDTILSNIIATQIDSHQRFGGVVPEVASRHHIEQIT LCIDQAMKQAQVQPTDLSAVAVTYGPGLVGALLVGVSAAKAFAFANHLPLIPVNHMMGHI YAARFVKPIKFPALALLVSGGHTELVYMAAENEFKIIGETRDDAAGEAYDKVGRVMGLKY PAGKAIDELAHQGQDTFHFPRAMEHDDNFDFSFSGLKSAFINTVHHADQVHEELDKADLA ASFQQSVVDVIVAKTVRACKSLEIKQLILAGGVAANRGLRDALDQQLSAQFNDLDFVKAP LKLCGDNGAMIGAAGEMLMRHGVFADLTLNADPSLEFDWEPGATK >gi|269838497|gb|ACXB01000014.1| GENE 267 255631 - 256227 314 198 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227894610|ref|ZP_04012415.1| ribosomal protein ala-acetyltransferase [Lactobacillus ultunensis DSM 16047] # 32 185 25 176 190 125 40 2e-27 MFDKLINWAQGTLFNRTRRLREEAFEIAHHNVVIEGQSYFVAQATNTDIPEILMVERAVY DGQTPWDRTAFANELRRKVDRLYLVIRHNDQLMGFIGASFNDRAKNAHITNVAILPEYQN QGIGSFLIEAIVRKAQFIEYKKVTLEVRKSNINAQALYLKIGFENVGLKKGYYFGDHEDA IDMQLDLSKWRGGYRGTR >gi|269838497|gb|ACXB01000014.1| GENE 268 256208 - 256936 255 242 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|238855674|ref|ZP_04645973.1| ribosomal protein ala-acetyltransferase [Lactobacillus jensenii 269-3] # 42 227 1 186 380 102 36 1e-20 MKILALDTSNVALSVAVLENDQLLAIQTTNIKRNHSKQLMPIISQTLKTAEVSLADLDRI VVAKGPGSYTGLRIAVTTAKTLAMTLEIELVGISSLAMLVPNAPNDGLVVPFFDARNQNV FAGIYEKHGMEVTPVVADQHLSFESLLAKINELGRSVYFINNHFEKFQPMVEDTLRVIAE HSTTLNNLPNAYALGLLGLQKQALENYYTFVPAYLRVTEAERNWKEKHPNDESKESYVRQ IN >gi|269838497|gb|ACXB01000014.1| GENE 269 257099 - 258091 952 330 aa, chain - ## HITS:1 COG:lin2620 KEGG:ns NR:ns ## COG: lin2620 COG1087 # Protein_GI_number: 16801682 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose 4-epimerase # Organism: Listeria innocua # 1 327 2 328 328 451 65.0 1e-126 MSILVVGGAGYIGSHMVKRLIEQGQEVVVVDNLSTGHRKAVDKKARFYEGDIRNHVFLKG VFDRENIDTVVHFAAFSIVPESMEKPLKYFDNNTAGMVALLEEMRDHDVKRIIFSSTAAT YGVPEKSPIEENDRQAPINPYGESKLMMEKIIRWADQAYGIKFVALRYFNVAGAYPDGSI GEDHGPETHLTPIILQVAAGQRDQLKIFGDDYNTPDGTNVRDYVHVLDLVDAHILAINYL KAGNDSDVFNLGSSTGFSVKQMVEAAREVTGEPIPAEIAERRPGDPDSLIAASQKARDVL QWQPQYDDVKEIIQTAWNWKQQHPRGYEDR >gi|269838497|gb|ACXB01000014.1| GENE 270 258136 - 258873 551 245 aa, chain - ## HITS:1 COG:SP1408 KEGG:ns NR:ns ## COG: SP1408 COG3884 # Protein_GI_number: 15901262 # Func_class: I Lipid transport and metabolism # Function: Acyl-ACP thioesterase # Organism: Streptococcus pneumoniae TIGR4 # 3 242 2 239 245 160 34.0 2e-39 MAGKIHEEEHLVTYYEGDQTGTMTVSMMVNVMLLVSDNQSQALGVGPEVVDQTGLGWVIT QYVMQLRRLPNVGERIVVGTQAVNHNDYFCQRDFWIKTLDGEKIVETTAMFVLMDRTTRR MRKLLPEIIDPYESDYIKRIVRLPKLQEITGETNQQDYAVRYFDIDMNHHVNNARYFEWI FNTVNDDILDNYFPKMVNIRYHVEIQPHQMVHSVVEFDRDSLRSSHQISVGDTLCCEANV EWARR >gi|269838497|gb|ACXB01000014.1| GENE 271 258907 - 259779 692 290 aa, chain - ## HITS:1 COG:lin0210 KEGG:ns NR:ns ## COG: lin0210 COG0313 # Protein_GI_number: 16799287 # Func_class: R General function prediction only # Function: Predicted methyltransferases # Organism: Listeria innocua # 3 290 4 292 293 313 54.0 3e-85 MLTQKSFTPSSAGSLYLVPTPIGNLDDMTFRAVQILKEADLILAEDTRNTQKLLNHFAVD TKQMSFHEHNTQERIPAILEMLADGRTIAQVSDAGMPSISDPGKELVQAAVQAGLKVIPL PGANAGTTALIASGLAPQPFTFYGFLARKPKEQQAELEKLKNHPDTLIFYEAPHRLAKTV KNIATVMGTERQMVLARELTKRYEEFIRGSVAEVQEWIASTEIRGEFVVMVAGNPHPQAV ENQDWESLTINEHVQKIIDEEKVKPTIAIKQVAKLRGLAKQEVYDIYHQL >gi|269838497|gb|ACXB01000014.1| GENE 272 259781 - 260128 343 115 aa, chain - ## HITS:1 COG:lin0207 KEGG:ns NR:ns ## COG: lin0207 COG4467 # Protein_GI_number: 16799284 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 111 1 126 129 67 31.0 4e-12 MEKKDLFDQITEVTHNAEDLLNKLHETQSAMVEIMEENAELKIENQHLRERLKQATAAEH ENEGTKNTKHGLSKSLQNLEKLYASGYHICNEFFGKHRQDDEECAFCLTVIYGDR >gi|269838497|gb|ACXB01000014.1| GENE 273 260133 - 261143 751 336 aa, chain - ## HITS:1 COG:lin0205 KEGG:ns NR:ns ## COG: lin0205 COG0470 # Protein_GI_number: 16799282 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA replication # Organism: Listeria innocua # 13 328 11 327 330 184 37.0 3e-46 MTAAVKNPAVTKQPAVIERFQQMIDNRHLAHAYLLTGASGTGKKEVARWVAERLFCQNLQ DGMPCGKCEECHRISTGQHPDVVEIEPDGQSIKVDQVRFLKAEFSKSGVEGNRKVFIIDQ AHLMTTSAANSLLKFIEEPAGNVTAFLLTESKNLILPTIMSRTEIIELKPLQKSQLVAEL TADGEVTESTAHLLVRLTSDREEMQNLLENNWIEDAHKALEKWFGAVTKGDMSAFVDVQT RIIGLAKDREHQAIVLDMMMLYAMDLLALKFGQVDLTYLTDQAALRQVAEQTTVSQLLKV SDLLLPLRGKLKQNLNFQGIVEKVTIELCDIFKMRG >gi|269838497|gb|ACXB01000014.1| GENE 274 261150 - 261485 478 111 aa, chain - ## HITS:1 COG:BH0043 KEGG:ns NR:ns ## COG: BH0043 COG3870 # Protein_GI_number: 15612606 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 4 111 2 109 109 122 55.0 1e-28 MATKLVIAIVQDKDANHLSDQFIDQNIRATKLSTTGGFLQSGNTTFLIGVEEERVPMVLD TIKKASHSREEFMTPSVNMDVNMEGATGYPIKVQVGGATVFVLPVDQFERF >gi|269838497|gb|ACXB01000014.1| GENE 275 261501 - 262130 769 209 aa, chain - ## HITS:1 COG:SPy0399 KEGG:ns NR:ns ## COG: SPy0399 COG0125 # Protein_GI_number: 15674539 # Func_class: F Nucleotide transport and metabolism # Function: Thymidylate kinase # Organism: Streptococcus pyogenes M1 GAS # 1 196 2 197 211 211 53.0 6e-55 MNGHFISFEGPDGAGKTTILEAMVEHYRTRLADRLTVTREPGGNPISEAIRAIILDKNNT EMDARTEALLYAAARRQHLTETILPALARGQVVFCDRYVDSSIAYQGAGREIGPEAVYQM NLFATEGCLPEKTIYLDVSAEVGLKRIMTHRTDDVDRLDLEQLDFHERVRDAYLALAKRY PERIVVIDASQSIGDVKKAVINVLDQILK >gi|269838497|gb|ACXB01000014.1| GENE 276 262555 - 263154 518 199 aa, chain - ## HITS:1 COG:SPy1422 KEGG:ns NR:ns ## COG: SPy1422 COG0353 # Protein_GI_number: 15675339 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecF pathway) # Organism: Streptococcus pyogenes M1 GAS # 1 199 1 198 198 286 67.0 1e-77 MQYPEPIAKLIDSFMKLPGIGYKTATRLAFFTLDMQKDDVTDFAKALISAQRDLRFCSIC GNITEDDPCDICQDASRDQKTVLVVEDSKDVMSMEQMKEYHGLYHVLHGVLSPMDGKGPE DINIASLLTRLQKNEAIKEVIIATNATPEGEATAMYISRLIKPSGIKVTRLAHGLSVGSD IEYADQMTLYKAVEGRTEM >gi|269838497|gb|ACXB01000014.1| GENE 277 263178 - 263492 507 104 aa, chain - ## HITS:1 COG:L122849 KEGG:ns NR:ns ## COG: L122849 COG0718 # Protein_GI_number: 15672102 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 5 102 1 98 99 85 47.0 2e-17 MRGGMGNMQNMMRQVQKMQKQVTEEQERLNETEFIGVAPDDMVKVTFTGNHKMKDIVINP EAIDEDDPDMLQDLVVAAVNDAMSKIDSETNKTMGKYTKGIPGL >gi|269838497|gb|ACXB01000014.1| GENE 278 263508 - 265244 1856 578 aa, chain - ## HITS:1 COG:lin2852 KEGG:ns NR:ns ## COG: lin2852 COG2812 # Protein_GI_number: 16801912 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, gamma/tau subunits # Organism: Listeria innocua # 1 577 1 579 579 523 49.0 1e-148 MSYQALYRVWRPQKFADMVGQEVVTRTLKNALITKQTSHAYLFTGPRGTGKTSAAKIFAK AVNCHYLKDGEPCNECATCRAITDGNLNDVIEIDAASNNGVEEIRDIRDKAKYAPTEADY KVYIIDEVHMLSTGAFNALLKTLEEPPTNVIFILATTEPQKIPLTIISRTQRFDFKRITP TQSYDRMVYILEQKGIEYDPKALSIIAKAAEGGMRDALSILDQVISFGNETVTMDNALLV TGSVNQQLLDQYLTQIFEKDTPAALETLHQILDEGKDGQRLIEDLIAVERNLLLYQEDPQ LVKEQSLSDLSEDFVKEADMVSGSELYEMIDTLNQIQQQMRFTTHPDVYLEVLTIKLSQR SATPASATADNEEVQQLKNEVDRLQGEVNRLKERTTSAAPAPAKPASAAPKKRASGGRDV KTPANLTKIYPILENATKDSLVEMQNLWRDLMDMLSVTKRALMHVSKPVAASEEGVVVAF DYDFLFEKAVDNESLRDELQQNLAKLTGSDYQVVYVTVEEWPTVRAEFIKTHHLSKETES ASKEEEPSQPTTVAPEDSAVVEKAVELFGSENVNVKND >gi|269838497|gb|ACXB01000014.1| GENE 279 265459 - 265908 262 149 aa, chain - ## HITS:1 COG:lin2867 KEGG:ns NR:ns ## COG: lin2867 COG0590 # Protein_GI_number: 16801927 # Func_class: F Nucleotide transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: Cytosine/adenosine deaminases # Organism: Listeria innocua # 1 147 7 153 154 170 55.0 7e-43 MGEALKEAQFAKMIDEVPIGAVVVHDGKIIGRGHNLREHSQDATTHAEVLAITEACAYLR SWRLWDCQLFVTIEPCLMCSGTIINSQIPEVYFGARDPKAGAVRSLYTVLEDQRLNHQVE VREGVAADQAAGLMKSFFKAIRERRKKNR >gi|269838497|gb|ACXB01000014.1| GENE 280 265937 - 266542 553 201 aa, chain - ## HITS:1 COG:lin0284 KEGG:ns NR:ns ## COG: lin0284 COG2813 # Protein_GI_number: 16799361 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S RNA G1207 methylase RsmC # Organism: Listeria innocua # 3 198 4 198 201 217 52.0 1e-56 MTDYYFTENPNGEHDEKHWRYTLLGHELNFVSDNGVFSKNTVDFGTRTLLEALPLDVPQS SILDVGCGYGPMGIALAKQFPEARVEMTDVNERALALAERNAEANGVAARTRVYHSDAYE AVAKTDFTTVVSNPPVRAGKTVVNAIITGAKEHLTKGGQLIIVLQKKQGAPSAKKLMAET FGNVTVLKKNKGYYILRSEHE >gi|269838497|gb|ACXB01000014.1| GENE 281 266764 - 266994 274 76 aa, chain + ## HITS:1 COG:SP1178 KEGG:ns NR:ns ## COG: SP1178 COG0695 # Protein_GI_number: 15901043 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutaredoxin and related proteins # Organism: Streptococcus pneumoniae TIGR4 # 4 75 2 72 72 80 52.0 5e-16 MKKVVVYTKNNCMQCKMTKRFLSENGVEFEERNINLHPEYIDELKGRGFQAVPVVQFSED DAIAGFRPDLLKKLAI >gi|269838497|gb|ACXB01000014.1| GENE 282 267087 - 269252 1930 721 aa, chain + ## HITS:1 COG:SP1179 KEGG:ns NR:ns ## COG: SP1179 COG0209 # Protein_GI_number: 15901044 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, alpha subunit # Organism: Streptococcus pneumoniae TIGR4 # 1 721 1 719 719 1066 71.0 0 MSLKDLTDVTYYDLNNEINIPVDNQIPLHKDQEALAAFLKENVQANTKQFTSLRERFDYL LEEDYIEAELVEKYSFDFIEKLYDYLRAQNFHFRSFMAAYKFYAQYALKTNDNEYYLENF VDRVAMNALYFGDGDEELAMQIADEIIHQRYQPATPSFLNAGRKHRGELVSCFLIQANDD MNSIGRTINSALQLSKLGGGVGINLTNLREAGAPIKGIEGAASGVVPVMKLLEDSFSYAN QLGQRQGAGVVYLNVFHPDIVSFLSAKKENADEKIRVKTLSLGVVVPDKFYELIKHDEDM YLFSPYSVEKVYGKPYAYVDITKEYDNLVNNPEIKKYKVKARNIENEISKLQQESGYPYV VNVDTANRENPIYGKIVMSNLCSEIMQVQTPSVIDNKQNYTELGTDISCNLGSTNIVNMM ATPHFGKSVETMVRALTFVTDHSDIDVVPSIQHGNALAHTIGLGAMGLHGYLAKNHLYYG EPDSVEFTSVYFMLLNYWTLRASNKIAKERGQVFHNFEKSKYADGSYFDKYLAQDFGPKS ARVKELFQGIDIPTTADWADLKQAVMQDGLYHQNRMAVAPTGSISYINDATASLQPIVNR VEERQEKKIGKIYYPAPYLSNDTLKYYQSAYDIDMRKVVDIYAAAQQHVDQGMSMTFFMR STIPDGIYDWKNGRTNKMTTRDLNILRNYAHHEGIKSIYYIRTFTDNDGEVGVNQCESCS I >gi|269838497|gb|ACXB01000014.1| GENE 283 269271 - 270224 985 317 aa, chain + ## HITS:1 COG:SPy1378 KEGG:ns NR:ns ## COG: SPy1378 COG0208 # Protein_GI_number: 15675308 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, beta subunit # Organism: Streptococcus pyogenes M1 GAS # 4 315 5 315 319 462 75.0 1e-130 MANYEAINWNAISDQIDKATWEKLTEQFWLDTRIPISNDLSDWRELDEDHQWVVGHVFGG LTLLDTLQSQDGMAALRKDVRTPHETAVLNNIQFMESVHAKSYSSIFETLNTPTEIDEIF EWSDSEEFLQNKTKFIYDLYHDDGHPLKKKISSVFLETFLFYSGFFTPLYYLGHNKLNNV AEIIKLILRDESVHGTYIGYKFQLGMKDLGENEQQELKDWMYNFLYDLYANEEKYVHKVY DQVGWTEEVLTFTRYNANKALMNLGQDPLFPDTEADVNPIVMNGISTGTSNHDFFSQVGN GYRLGNVEPMSDEDYEI >gi|269838497|gb|ACXB01000014.1| GENE 284 270453 - 270566 92 37 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MYPQKYHINIHHIPFIPIMKTQKNHLYSGITGIRWFL >gi|269838497|gb|ACXB01000014.1| GENE 285 270576 - 270941 556 121 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116493228|ref|YP_804963.1| 50S ribosomal protein L12P [Pediococcus pentosaceus ATCC 25745] # 1 121 1 121 121 218 94 2e-55 MALDKDQFIEDLKGASISDLNDLVKAIEDEFGVSAAAPVAAAGAAGGAAEAKTSFNVELT GAGSAKIKVIKAVREITGAGLKDAKDMVDNAPTVIKEDLSEDEANDMKAKLEEAGATVEV K >gi|269838497|gb|ACXB01000014.1| GENE 286 270987 - 271493 753 168 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116493229|ref|YP_804964.1| 50S ribosomal protein L10P [Pediococcus pentosaceus ATCC 25745] # 1 168 1 168 168 294 90 2e-78 MSKEAIAKKAAIVDEVAEEMKNAVSAIVVDSRGLTVAEVTDLRKQLRDSGIKFRVIKNKI LTRAAEQAGFEGMDDIFVGPSAVAFSAEDAVAPAKILKQFADSNDNLSIKGGVIEGKVAD IDTINTFATMPSREDLLAMLANEFMSPVRDVAYALKAVADKKSEEDAA >gi|269838497|gb|ACXB01000014.1| GENE 287 271693 - 272382 1118 229 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116493230|ref|YP_804965.1| 50S ribosomal protein L1 [Pediococcus pentosaceus ATCC 25745] # 1 229 1 229 229 435 94 1e-120 MAKKGKKFQEAAKQVDSLKAYAPKEALELVKKIDFAKFDATVEVVYKLNVDTKQADQQLR GAVVLPNGTGKEQTVVVFAKGAKADAAKAAGADVVGDDDLVQRIQDGWLDFDVAIATPDM MGQVGRLGRILGPKNLMPNPKTGTVTMDVEKAVADSKSGKVTYRTDRDGNVHMPIGKVSF EADQLLGNLQTINDTIVRLRPASVKGAYIQNVSVASTFGPGVKVDFTQF >gi|269838497|gb|ACXB01000014.1| GENE 288 272474 - 272899 681 141 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116495732|ref|YP_807466.1| 50S ribosomal protein L11 [Lactobacillus casei ATCC 334] # 1 141 1 141 141 266 95 5e-70 MAKKVANIVKLQIPAGKATPAPPVGPALGQAGINIMGFTKDFNARTADQAGMLIPVVITV YEDRSFDFITKTPPASVLLKKAAGVEHGSGEPNTKKVAKVTSAQVKEIAETKMQDLNAAD VEAAMRMIEGTARSMGFEVEG >gi|269838497|gb|ACXB01000014.1| GENE 289 273028 - 273573 691 181 aa, chain - ## HITS:1 COG:BS_nusG KEGG:ns NR:ns ## COG: BS_nusG COG0250 # Protein_GI_number: 16077169 # Func_class: K Transcription # Function: Transcription antiterminator # Organism: Bacillus subtilis # 5 180 2 177 177 223 67.0 1e-58 MESEEKKWYVLHTYSGYENKVKNNLDSRAKSMGMEDYIFRVVVPEEEEIETKNGKEKTVK KNEFPGYVLVEMVMTDDSWYVVRNTPGVTGFIGSHGSGSKPTPLLPEEVDRVLRRLGMTA RHADINVEVGELVTIVDGAFEGLTGKITEIDHNNMKLKVNIDMFGRETSTELDIDQIDKI D >gi|269838497|gb|ACXB01000014.1| GENE 290 273667 - 273837 230 56 aa, chain - ## HITS:1 COG:no KEGG:PEPE_1495 NR:ns ## KEGG: PEPE_1495 # Name: not_defined # Def: protein translocase subunit SecE/sec61 gamma # Organism: P.pentosaceus # Pathway: Protein export [PATH:ppe03060]; Bacterial secretion system [PATH:ppe03070] # 1 43 1 43 52 68 81.0 6e-11 MFRFLKSIGQEMKEVDWPNFRQLRHDSATVVSTSLFFVAFLALVDWLIQLFLKLFI >gi|269838497|gb|ACXB01000014.1| GENE 291 273850 - 273999 249 49 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116493234|ref|YP_804969.1| 50S ribosomal protein L33 [Pediococcus pentosaceus ATCC 25745] # 1 49 1 49 49 100 89 7e-20 MSQKKIALACTVCGSRNYTIVANPQRTERLEVKKYCKRCNKHTLHSETR >gi|269838497|gb|ACXB01000014.1| GENE 292 274053 - 274634 466 193 aa, chain - ## HITS:1 COG:no KEGG:PEPE_1497 NR:ns ## KEGG: PEPE_1497 # Name: not_defined # Def: ComX # Organism: P.pentosaceus # Pathway: not_defined # 5 190 9 194 197 245 64.0 7e-64 MQQVDLDEAKIIAEVKADDTHNFERLFNKYHPIIKKMRQKYTIRSFDWDDWMQEGRIVFF NSVVNYDADLKITLGAFFKNNFRNRIFSILRFEMAYKRKAGFAAQSLEELKEEAEVLGQQ VSRITPQNQLMVKETYAEYETLLSPFEKEVSVLLFQGLRPDQIAERLGYDVAKIQNALLR CKQKLSRQLYEHR >gi|269838497|gb|ACXB01000014.1| GENE 293 274771 - 275526 636 251 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 [Bacillus selenitireducens MLS10] # 10 251 7 249 255 249 51 9e-65 MNNENKQQPDFVIGRHPAMASLKSGHSINKVFIQEGLKSESIGQIIAKAKKQGLVIQRVS KSKLDTLANGQNHQGVVLAVASFEYASLEQVFELAESRNEAPFVVILDGIEDPHNLGSIL RTADAAGVHGVIIPKRRAVGLTSTVAKTSAGAIERVPVVQVNNLVNTLKELKDRGLWIFG TDMAGTDYRRWDATGPVGLIIGNEGKGMARLTKENVDEMLTIPMVGDIQSLNASVAAGLL IYQGYSSRHPL >gi|269838497|gb|ACXB01000014.1| GENE 294 275519 - 275932 330 137 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764762|ref|ZP_02171816.1| ribosomal protein S13 [Bacillus selenitireducens MLS10] # 8 130 11 133 141 131 52 3e-29 MSKEINYQAINGIALAYLGDAEYEVYIRRHLIEEGMTKPNRLHHVATRYVSAKAQAALID AMQENDFLTEAEWEAFKKGRNAKSHTSAKNTSVLTYRISTGFEAIVGYLSLTNQTERLDE FAQWCIDKVEEGKLRIE >gi|269838497|gb|ACXB01000014.1| GENE 295 275925 - 277343 1467 472 aa, chain - ## HITS:1 COG:SP0591 KEGG:ns NR:ns ## COG: SP0591 COG0215 # Protein_GI_number: 15900500 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Cysteinyl-tRNA synthetase # Organism: Streptococcus pneumoniae TIGR4 # 1 469 1 446 447 520 56.0 1e-147 MIKLYNTMTRSKEVFKPLVDQQVSMYVCGPTVYNYIHIGNARSVIAFDTIRRYLEYRGYQ VRFVSNFTDVDDKMIKAAQAENITVPELAERYIAAFKEDVQALNVEPATVNPRATENIAD IIAFVADLIEKDYAYVVEGNVYYRARRFKNYGALSHQNIDELEQGASQHINDEETMQKED PIDFALWKAAKPGEIAWEAPWGKGRPGWHIECSVMSTKYLGDTFDIHGGGEDLQFPHHEN EIAQSEARTGVQFARYWMHNGFVTVGDDNEKMSKSLGNFVTVHDLIKQVNPQVLRFLMST TQYRKPIQYTETSLQDAKNNLEKLQNAYVNLNYRLQTADGAADPAVDQQAAALQADFVAA MDDDFNAQNGITVVYEFARLINVYSEQATVNHEQIARLAKQFAEMAAIFGIELATATEAP ADEKIEALVKQRDAARAARDFETSDRLRDQLKEMGIILEDTPQGTRWRKKDE >gi|269838497|gb|ACXB01000014.1| GENE 296 277500 - 278987 1446 495 aa, chain - ## HITS:1 COG:lin0269 KEGG:ns NR:ns ## COG: lin0269 COG0008 # Protein_GI_number: 16799346 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glutamyl- and glutaminyl-tRNA synthetases # Organism: Listeria innocua # 4 492 5 489 491 565 58.0 1e-160 MAKQEIRVRYAPSPTGHLHIGNARTALFNYLFARHYKGKFILRIEDTDQSRNIADGEQSQ IDNLKWLGMDWDEGPDKPGDYGPYRQSERKEIYQPLIDQLVAEGKAYESYMTEEELAAQR EEQRANGEMPHYVDEYAGLSPEEKAQKIADAKAAGIQPVIRFKVPEHKKYEWDDIVKGHV AFDSETIGGDFVIQKRDGMPTYNFAVVVDDHMMKISHVFRGDDHVANTPKQLMIYEALGW EAPKFGHMSLIINSETGKKLSKRDETILQFIEQYRSLGYLPEAMLNFIVLLGWSPVGESE IFTQREFIKMYDEKRLSKSPAAFDAKKLEWINNQYVKAADEDRIMHSALHQLIKAGKIET DPAPMKIEWARKLINLFKRQMSYTAQIVDFAELFFNGPEDIDEEAKAEMAKDDALPVLKA LEKKFADLEVFDTVNILAAIKAVQKETGVKGRKLWMPIRIAITHEMHGPELPESLELLGH ELSMKHLRAMIEELS >gi|269838497|gb|ACXB01000014.1| GENE 297 279112 - 280278 818 388 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764768|ref|ZP_02171822.1| ribosomal protein S5 [Bacillus selenitireducens MLS10] # 1 370 22 395 397 319 44 7e-86 TRGGKRMKDIKKRIVQAVFALAGGALGMAYLPLIWLIFKINTIVLLNNRVTNFLIGAIIF WILSIFLTSYVLKMMKRIEKALIDTSPLYLITGSIGTVLGLVIAILISTLFYRSHVFFVN TVIPLILMLMLGYLGYRLGTTRFNEWKKLFQTRKRDGNNQVLDRRAGENYHHYKILDTNI LIDGRIYDLVKTGLLEGTLLVPNFVLYELQYIADSADSIKRVRGRRGLDFLNKLQSEKIM PIEMYEGDYEEIEEVDSKLIQLAKDKDAVIVTNDYNLNKVSQFQNVQVLNINELANALKP RVIPGESMSVHVVKNGTERQQGVAYLDDGTMVVVEDGKFYIGKTIEVIVTSAIQTDAGRM IFAKPMHSTKEITHDKPDEKEGKKPESK >gi|269838497|gb|ACXB01000014.1| GENE 298 280376 - 281746 1279 456 aa, chain - ## HITS:1 COG:BS_sms KEGG:ns NR:ns ## COG: BS_sms COG1066 # Protein_GI_number: 16077155 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted ATP-dependent serine protease # Organism: Bacillus subtilis # 1 455 1 456 458 603 65.0 1e-172 MAKVKTQFVCNNCGYASPKFLGRCPNCGKWNTLVEERMSDPKAERKSRVSFDGKHTQPQL ISDVAMHEEPRVKTGMEELNRVLGGGVVDGSLVLIGGDPGIGKSTLLLQLSGQLAETQRK VLYVSGEESASQIKMRAERLKVNSERFYLYPETDMSSVRAVIEELHPEYVIIDSVQTMQE PDIESAVGSVSQIREITAELMQIAKTNNITIFIVGHVTKGGAIAGPKILEHMVDTVLYFE GDLHHTYRILRAVKNRFGSTNELGIFEMREEGLREVANPSEIFLEERLKDASGSAIVVSM EGTRPILVEIQALITPTIFGNAQRTASGLDRNRVSLIMAVLEKRAKLTLQNQDAYLKAAG GVKLDEPAIDLALAISIVSSFKNQGTRPTDSFVGEIGLTGEIRRVNRIEQRVAEAQKLGF KRILIPKNNLKGWQPPEGIEVVGVATIADAIRRAFN >gi|269838497|gb|ACXB01000014.1| GENE 299 281840 - 282376 545 178 aa, chain - ## HITS:1 COG:L181168 KEGG:ns NR:ns ## COG: L181168 COG0756 # Protein_GI_number: 15672158 # Func_class: F Nucleotide transport and metabolism # Function: dUTPase # Organism: Lactococcus lactis # 3 176 4 148 150 140 44.0 2e-33 MKRGFEIVSSYEGQGLHLPQRQTKAAAGYDFEAARDFTLPSIWKMDFIKVLWAIHHQEEV SPAQQQLAQAALKPYLVPTGIKAYMADDEYLMLANRSSNPLKRGLILPNGVGIVDADYYN NSGNEGEIFFQLINYGITDITIKKGERIGQGIFMNYLTADGETGNLQTRTGGFGSTKR >gi|269838497|gb|ACXB01000014.1| GENE 300 282505 - 282828 346 107 aa, chain + ## HITS:1 COG:no KEGG:PEPE_1505 NR:ns ## KEGG: PEPE_1505 # Name: not_defined # Def: acetyltransferase # Organism: P.pentosaceus # Pathway: not_defined # 1 107 1 107 109 152 64.0 4e-36 MKRNLDENRLFWTNDANDQVGQILYSPMPDHATLICEEVLVNPQFRGRGIGGKIMADFVE FAKEREQKIYPLCPFALKYFQNHPELAGMNMHEQITAEKVKNLINRK >gi|269838497|gb|ACXB01000014.1| GENE 301 282839 - 283525 748 228 aa, chain + ## HITS:1 COG:L0045 KEGG:ns NR:ns ## COG: L0045 COG0120 # Protein_GI_number: 15674215 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose 5-phosphate isomerase # Organism: Lactococcus lactis # 4 224 2 222 224 232 53.0 5e-61 MDQNELKKLVGNEAVKFIEDGMTVGLGTGSTVKFMVDALGKRVKEENLNIVGVPTSDRTA KQARDLGITVKSVDEVDHIDLTIDGADEISSDFQGIKGGGAAHLFEKIVATNSSKNMWIV DESKMVDKLGAFPLPLEVIPYGSKQVFKKLEAKGFNPEFRMDENGNHVLTDSKNYVIDLH LHEIDDPHALADYLIKQVGIVEQGLFLDTVNTVIVGRQDGPEVLQARP >gi|269838497|gb|ACXB01000014.1| GENE 302 283574 - 284920 1220 448 aa, chain + ## HITS:1 COG:SPy1651 KEGG:ns NR:ns ## COG: SPy1651 COG3579 # Protein_GI_number: 15675522 # Func_class: E Amino acid transport and metabolism # Function: Aminopeptidase C # Organism: Streptococcus pyogenes M1 GAS # 5 445 4 443 445 488 55.0 1e-137 MSKEISNELINQFNQEYHDRKEAKVLERTVTKNGILNASRNLAADIQSTPVFSIDLDTGD VANQKQSGRCWMFAALNTMRHDMKNQFKVPGNFELSQNYTFFWDKFEKSNWFYENIIKTA DLEPDDRKVAFLLNEPQGDGGQWDMLCALIEKYGVVPQSVYPETYNSSKSREFDTLLNEK LRKDAITLRKMVRDQASEDEIQSRKEKMLSEVYRMAAYSFGEPPVKFDWEFRDSDQVYHR EAGITPKEFYDKYVGWNLDDYVSIINAPTADKPFNKTYTIEMLGNVVNGRPVKHLNLTMK DFKQAAINQLKAGKSVWFGCDVNQHSEAREKGLLDLDAFAEDELFDIDLSMTKAERLDYK ESLMTHAMVLTGVDLVDGQPTKWKVENSWGKKVGEKGYLVMSDAWMDEYCYQVVVEKQYL TEAQRKAQAEDPTVLKPWDPMGSLAYKD >gi|269838497|gb|ACXB01000014.1| GENE 303 285340 - 286011 482 223 aa, chain - ## HITS:1 COG:PM1506 KEGG:ns NR:ns ## COG: PM1506 COG0588 # Protein_GI_number: 15603371 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoglycerate mutase 1 # Organism: Pasteurella multocida # 3 220 2 224 227 220 51.0 2e-57 MAKLVLIRHGESTANRDNVYTGWSDVPLTERGIQQAHEAGKLLAKAGINFTAVHTSMLQR AIVTANIVVDELGQSWLPITKTWRLNERHYGALRGQNKDATRQIYGKHQVALWRRSFDAV PPLLNQADHDRRYRMYGILHEPLGESLHMAYDRLLPYWVDQIAPRLIQGENQLVVAHGSS LRALIKYLEQISDQGIDGVEVENGEPIVYEMDHRLNIVQKTKM >gi|269838497|gb|ACXB01000014.1| GENE 304 286035 - 286802 774 255 aa, chain - ## HITS:1 COG:L0190 KEGG:ns NR:ns ## COG: L0190 COG0825 # Protein_GI_number: 15672762 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA carboxylase alpha subunit # Organism: Lactococcus lactis # 3 247 15 259 260 179 40.0 6e-45 MDKELSARLNKVRSAQRITGRQIIQRLFTEIVEMHGDRVNSDDPAVWAGIGLFEEQPVTF LSVDRGQDLTERLAKNGGAVRAGGYRKALRNVELAQRFDRPVVSFLNMPGADASVDSENE GQSLMIANLMETMGALRVPNLAVIVGEGHSGGALAFANANQLWMLENGLFSVAAPEAMAA ILRDDRALARVPMTASQLQQIGIADQVFKEGPQLTENLRKALRQWLATSRKMDENELVMQ REQKFQQVLRDWFAD >gi|269838497|gb|ACXB01000014.1| GENE 305 286804 - 287586 589 260 aa, chain - ## HITS:1 COG:SP0426 KEGG:ns NR:ns ## COG: SP0426 COG0777 # Protein_GI_number: 15900345 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA carboxylase beta subunit # Organism: Streptococcus pneumoniae TIGR4 # 7 257 34 284 288 234 43.0 1e-61 MQKQNRWSKCPKCGKHVHELQWGTFRRCPFCRCPQRLTVEERIAITFDEGKFNQLTVPVE TQNQLNFPNYDQKLAKSRQQSGHGEAVTIGWGTIAGNPVAAGIMDNRFMMGTLSTVTGMA LRQIMRWARHQGYPLILFTASGGARMQEGIYALLQMNTILAEQRRLREAGGLSINVLTDP TMGGVSASFAFKSDYVIAEDHAQIGFSGKRVIQQAIGEDLPTGFQTAEYLLQHGQLDSVV QREELRGYLQRLLRLHGYGG >gi|269838497|gb|ACXB01000014.1| GENE 306 287589 - 288884 1187 431 aa, chain - ## HITS:1 COG:mll0203 KEGG:ns NR:ns ## COG: mll0203 COG0439 # Protein_GI_number: 13470483 # Func_class: I Lipid transport and metabolism # Function: Biotin carboxylase # Organism: Mesorhizobium loti # 1 428 1 443 447 370 45.0 1e-102 MFKKVLVANRGEIAVRIIAACRQLAISTVVVYSTADEQAQFVQMADEAICVGPASAQESY LNREAILMAAQITGSDAIHPGYGFLSEDPLFATMVAECGLTWIGPSPDQIQRYADKERSR ELAQKRGVLTIPGSGLITDDRQIKPAAEKLGFPVLLKASFGGGGKGIRVAHDEQELAQII AVVRQESGASFGSSPLYLERDLQNARHIEVQVLGLNEQIIILGDRNCSIQLHRQKVVEES PANLTIEQRERLYQAVHRLLDQSGYESLGTVEFLQVGEEFYFLEMNTRLQVEHGVTEETT GIDIVQTQIVVAAGQPELVKVGDAQVHAIEARINATAPGQLVELEWPTTRIETGYAAGNQ IAPYYDALVGKIIVTASTRAQAVQKLRQALKQTKITGVPTNLAAVEQLVASPAFIQGTYD IRTYQNLLDGC >gi|269838497|gb|ACXB01000014.1| GENE 307 288886 - 289263 435 125 aa, chain - ## HITS:1 COG:no KEGG:lp_0589 NR:ns ## KEGG: lp_0589 # Name: accB1 # Def: acetyl-CoA carboxylase, biotin carboxyl carrier protein (EC:6.4.1.2) # Organism: L.plantarum # Pathway: Fatty acid biosynthesis [PATH:lpl00061]; Pyruvate metabolism [PATH:lpl00620]; Propanoate metabolism [PATH:lpl00640]; Metabolic pathways [PATH:lpl01100]; Biosynthesis of secondary metabolites [PATH:lpl01110] # 18 122 18 129 133 67 41.0 1e-10 MKIDKVYDILNRLKDYPYQEIDVEVDGLKLHVKKADASQTTSQTTTPVPDPSGVMVKSPM VGIVHFNQELAAGQVVEKGQVIAQIESMKLFNDVKAPQAGTVQRLLAADGEGVAYDQPLV ELVGK >gi|269838497|gb|ACXB01000014.1| GENE 308 289273 - 290241 1074 322 aa, chain - ## HITS:1 COG:SP0417 KEGG:ns NR:ns ## COG: SP0417 COG0332 # Protein_GI_number: 15900336 # Func_class: I Lipid transport and metabolism # Function: 3-oxoacyl-[acyl-carrier-protein] synthase III # Organism: Streptococcus pneumoniae TIGR4 # 4 322 5 324 324 272 47.0 8e-73 MSLEILATAHYVPERVVDNDELAQIMDTSDEWIQSHTGIKTRHYALGAENTSDLAATVGQ QLLEKSGLTADQIDLIILSTITPDSLTPATAALVQDKIGARNAFAFDISAACAGFVFGLS TAEKFLRSGRYQNAMVISAETNSKMMDFQDRTSAVFFGDGAGGVILSQSTKTDDFFVDEE LATLAEKNEYIHSGRIPAISEVKASNYPQIDAFYQSGRDVFSFATEAVPPQMQTILDRNG LHDDIDYVICHQANLRIIEKIAEETQIPFEKFVINVQDYGNTSSAGIPMALDQLQSRDPS AKTVLLTGFGAGLDYGSLIIKL >gi|269838497|gb|ACXB01000014.1| GENE 309 290470 - 290931 560 153 aa, chain + ## HITS:1 COG:no KEGG:PEPE_1512 NR:ns ## KEGG: PEPE_1512 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 153 1 153 153 169 71.0 4e-41 MFNFSISWLIFWMKGRVEVDNQSVRSRIPRLLIWIFPYGMVAKDVNLADIKATEVKSKNQ IFPLLLGIVLIVLGILSTMNDGVALGILAIIIGIILGGAGFKARLVLTTTQGTVNLDAVA FQKDVLLQIAQEIKNRQTKPEPQIKDNQVLEEL >gi|269838497|gb|ACXB01000014.1| GENE 310 290945 - 291118 127 57 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MAKKERGTKVSKQKTVHDEVEFPHEPFLFWRFDFNSAKTCAKSQFVPRFFYCMVDNH >gi|269838497|gb|ACXB01000014.1| GENE 311 291133 - 291633 609 166 aa, chain - ## HITS:1 COG:lin0143_2 KEGG:ns NR:ns ## COG: lin0143_2 COG3444 # Protein_GI_number: 16799220 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Listeria innocua # 6 163 2 157 165 142 50.0 3e-34 MTMEILLARVDSRLLHGQVATAWAKKVKPNRILVVSDSVTEDTLRKTLITQAAPPGVFVN VITVDKMIKIYHDPQFDSFKVLLLTETIQDMLKLVEGGIDISNLGVDVGSLAYAVDMTMS TDAIAVGKEEVAAIRALAAHGLTVYAQKIPNDSRKDLIKMLDKNGL >gi|269838497|gb|ACXB01000014.1| GENE 312 291654 - 294584 2378 976 aa, chain - ## HITS:1 COG:lin0778_1 KEGG:ns NR:ns ## COG: lin0778_1 COG1221 # Protein_GI_number: 16799852 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain # Organism: Listeria innocua # 1 477 1 463 464 444 48.0 1e-124 MKRQERIYQYVLEHTEPASADEANRQNGLTTSTIADALKIARSNVSKELNDLVRQRKLFK ISGRPVRYCQLALGEDDPLAQDPSEYHIEDGISGMELGKKKLAGKLDKPAATKQLSVHKD IFDRMIGKDQSMKNQIEQAKAAMLYPPRGLNTLIIGPTGSGKTYFANAMFDFAQARNLLS KDQQLVTFNCADYAHNPELLMSHLFGYVKGAFTGADDEQDGLIQEADGGMLFLDEVHRLP PEGQEMIFYFMDHGTYSRLGETAKTHHANVRLVCATTEDPESTLLQTFVRRIPITIQLPP FNKRSPEERIELLRSLVTIEANRTNKEITLTEDVVQALLGSVTYGNVGQLKSNIQLVCAK GFLNNIGNEGKIMITSDDLPGNIKDGLLNLASNRQELGAISKLLEPYMVVKPGASYATPV TRKDSYELPYNLYEIIGDKAMMLREEGLDQENINNFITTDINLHLKSFYKNDLDTVNAES KLAEIVDKGIINFTKQIQPKVENRLNYRFKDNFIYAMSLHISSFIKRIQSGKPMRLMGND LVAMVKDYPEELEVAKSIKESLEQHYGLPIPESESYYLAVLLISLKTVPTSTGKVGIVVA AHGSNTASSMAQVVSQLLSDNSIQAFDMPLDMNPQVAYKGIVDRVRAADQGEGVLLLVDM GSLSTFGPKITEESQIQVKVIDMVTTAMVLEATRKASFIDSNLDEIYAELREFHGYSRVA ITDEGQSMEDDQTVAMLSGKPKAVIAVCSTGEGTAQKIKGILDQLLLQNLIEDIKVFPIS IVNMHQAIEEINQKYTIVAATGVMDPEVGVPFMPLQSLLQGGGEKFVRQLAERSELSWVF DEKDAKLTRSVCRQYLSKYFVFLNADKFADILWNYVDYLAQSRQVEFSESFRINLIMHVA GAVERQLTNNPMQVNAAELAEVQEQPWFKAVQEADDQFLQRIQIKMTLGEEFYIYKLLET WQEKNDTILNEMEKNQ >gi|269838497|gb|ACXB01000014.1| GENE 313 294926 - 295306 270 126 aa, chain - ## HITS:1 COG:lin0146 KEGG:ns NR:ns ## COG: lin0146 COG4687 # Protein_GI_number: 16799223 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 123 1 123 129 154 57.0 5e-38 MVQSINTKVDQVTDATSFLGMGDYGKVMIGDRGFEFFDNRNVKNYIQIPWKEVDKVVASL MFGGRWIPRFAIKTKHSGTFSFAAKHPHELLRGIRKYVDEERMVRSLGVVDVVKRGLKEV WRRIRK >gi|269838497|gb|ACXB01000014.1| GENE 314 295425 - 296336 1108 303 aa, chain - ## HITS:1 COG:CAP0068 KEGG:ns NR:ns ## COG: CAP0068 COG3716 # Protein_GI_number: 15004772 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Clostridium acetobutylicum # 1 303 1 303 303 462 77.0 1e-130 MQEKVQLTKKDRIHVWLRSTFLQGSWNYERMQNGGWAYTLIPALKKLYKTKEDRAAALTR HLEFFNTHPYLAAPILGVTMSLEEDRANGAPIDDVAIQGVKVGMMGPLAGVGDPVFWFTV KPILGALAASLAMGGSILGPILYFVLWNAIRMGFTWYTQEFGYKAGSKITEDMSGSLLQD VTKGASILGMFILGSLINRWVVVKFTPVVSTVKQSKGAYIDWANLPSGAKGIQKALQEQA AGLSLTREKVTTLQDNLDQLIPGLAGLLLTLLCMWLLKKGVSPIIVIFGLFILGVVLHLL HVM >gi|269838497|gb|ACXB01000014.1| GENE 315 296354 - 297160 941 268 aa, chain - ## HITS:1 COG:CAP0067 KEGG:ns NR:ns ## COG: CAP0067 COG3715 # Protein_GI_number: 15004771 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Clostridium acetobutylicum # 1 268 1 268 268 295 81.0 8e-80 MALNAIQMILVVIVSFLAGVEGILDQFHFHQPVIACTLIGLVTGNLVPCLILGGSLQMIA LGWANVGAAVAPDAALASVASAIILVLGGQGKAGVSSAIALAVPLAVAGLLLTIIARTLA TLIVHIMDKAAKEGSFAKLELWHYIAIVMQGLRIAIPAALILAIGAGPVRGLLSTMPAWL TDGLSIGGGMVVAVGYAMVINMMATKEVWPFFALGFVLATVQDLTLIALGTIGISLALIY LTLSKMGGSSNGGNSGTGDPLGDIIDKY >gi|269838497|gb|ACXB01000014.1| GENE 316 297181 - 298161 1050 326 aa, chain - ## HITS:1 COG:CAP0066_2 KEGG:ns NR:ns ## COG: CAP0066_2 COG3444 # Protein_GI_number: 15004770 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Clostridium acetobutylicum # 157 324 1 168 168 247 73.0 2e-65 MVGIIIASHGEFAKGILQSGSMIFGEQEDVKAVTLMPSEGPDDLRAKLQEAIASFSNQDQ VLFLVDLWGGTPFNQVNNLFEEHKDKWAIVAGLNLPMLIEAYASRLSMESAQEIAAHIID TAKEGVKVRPEELQPKEAPKAAEAAAPVNTGKPGHFDYVLARIDTRLLHGQVATSWTKTT NPDRIIVVSDNVAKDNLRSSMIKQAAPAGVKAHVVPIEQMIKLAKDDKHFGGTRAMLLFE TPQDALKAIEGGVPIKTLNVGSMAHSAGKVQPNTVLAFDQNDIDTYKKLENMGVQMDVRK VPSDSRDNLDAIMKKAQDELNKQKNN >gi|269838497|gb|ACXB01000014.1| GENE 317 298786 - 299238 137 150 aa, chain - ## HITS:1 COG:L86677 KEGG:ns NR:ns ## COG: L86677 COG3091 # Protein_GI_number: 15672268 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 1 149 2 143 147 119 43.0 3e-27 MTDLELTQLTRRLAKQFFNQAYPYEARFNRRLRTTGGRYFLADHHIEINPLMLSEFDEET LVGVIKHELVHYWLHVHHEKPDHCNPHFKELLQRTGGLRYAPVTSKRRTTTTGRLVYQCK KCGQLYHRQRRINVRRYVCGRCGGRLGLKH >gi|269838497|gb|ACXB01000014.1| GENE 318 299235 - 301409 1653 724 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|51894064|ref|YP_076755.1| ribosomal protein S1-like protein [Symbiobacterium thermophilum IAM 14863] # 20 718 20 719 764 641 49 0.0 MEAEILALVEKQLTAYRPQQIRATLEMLDEGNTVPFIARYRKERTHSLDEVQIREIQAAY HQTETLEKRKTEVLKQIEEQGKLTTGLKQQIKQATTLTAVEDLYLPYKQKRRTKATIAKE AGLEPLAAWVLTFPQQGLRERLVAAVNPEVKLNTIEDVESGVHEILAEAFGEQAEIRAWI RKYTQHNGALVSEVKRQGKELDENGVYAIYYDFQAPLAQLAPHQVLAINRGEKEKVLRAK VAVEEAGIERYLNFRLVQKHRGPAVALVQAAYRDAYKRFIGPAIEREMRAELTSMAEHRA IKVFGENLYHLLMQAPLKGKVVLGFDPAYRTGCKLAVIDENGKFLDKLVIYPHRPAPQAK RAAAAKQLKDFIEKYHVEMIAIGNGTASRESEEFVAQVIKTIARPVYYVIVNEAGASVYS ASPAARAAFPDLQVEERSAISIGRRLQDPLAELIKIDPQAVGVGQYQHDVAQKDLREQLD HVVETAVNQVGVNLNTASPELLTHISGLTKTTAQNIVRFREANGSYRTRQAIKSVPRLGP KAYEQSIGFLRIVDGDDELDNTGIHPESYPVVKALMKRLGLNLHDLGTPAFNQTLQQVKI AQLAAQLQVGEETLHDILEELQKPGRDLRDEMPAPLLRSDVLTLEDLQPGMQLQGTVRNV IDFGAFVDIGVKQDGLVHISKLKKGFVKHPSDVVAVGDIVTVWVESVDTKRSRIQLTMIP TEEQ >gi|269838497|gb|ACXB01000014.1| GENE 319 301530 - 301964 436 144 aa, chain - ## HITS:1 COG:no KEGG:PEPE_1522 NR:ns ## KEGG: PEPE_1522 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 144 1 144 144 131 53.0 7e-30 MKVSIQAYANTISRLTEKLEEIGSSVDPFFQELKKAGQLGTVDEMDQSRLKEIKKQFQVA TDQYRALEKMVWNAKVPAKLIGKHQLLKRYLREYANQCQKMVDAVDDQTKKLDEVAFQES EHAQEAAMGQMTKALTKIMSSLMG >gi|269838497|gb|ACXB01000014.1| GENE 320 301966 - 304635 2498 889 aa, chain - ## HITS:1 COG:SP1551 KEGG:ns NR:ns ## COG: SP1551 COG0474 # Protein_GI_number: 15901394 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Streptococcus pneumoniae TIGR4 # 9 883 27 907 914 982 59.0 0 MKASKLKDWQRTVEDTAAKQDTRLAGLTAAEAQRRLEKYGHNELATKGKTTLLQKFLAQF KDLMIIVLLVAALISVFVGEGVDALIILLVVVLNAIFGVFQESKAEEAIDALKSLAAPQA KVERDGQIQQIQSTELVPGDVVILEAGDVVPADLRLVESASMQIEESALTGESVPVNKQT AALDDEQLPLGDRTNLAFMNSNVTFGRGKGIVIHTGMATEVGKIARLINDADETITPLQR NLTKLSKTLTWLILAIAVVVFAVGMLRGQESLIDMLLTAISLAVAAIPEGLPAIVTITLA LGTQRMVKRHAIIRKLPAVETLGSTQIIASDKTGTLTQNKMTVEKLFVDNQLMDAATVTP DFQSKLFDLMILNNDTKKIDEELVGDPTETALIAFNDQRGYSSAAVIDQYQRVAEVPFDS ERKLMSTVNALPDGKYLITVKGAPDELLKRTTKYVMPGAELPMDEAEEHRIQAVNHDLAL QAIRVLGFAYRIVDTVPEELTSAVVENDLIFAGLVGMIDPERPEVAQAIQEAHDAGIQTL MITGDHRDTAGAIAKRLGMITDAEADTAVVTGAELDQQTDEQLADHVANYRVYARVAPEH KVRIVDAWQKKGKVVAMTGDGVNDAPSLKQADIGVAMGITGTEVSKGASDMVLADDNFAT IVDAVEEGRKVFANIQKAIQYLLSANLGEVLTLFVMTMMGWQILAPVHILWINLVTDTLP AIALGLEPAEKNVMQQPPRDKKSSFLSGGVAGNVIYQGILEGAITLFVYAMALAFPDHSG SAQIHADALTMAFATLGLIQLFHAFNSKSIHGSIFQATTWKNKFFNWAILIAFALLAITI VVPGFNDLFHVSHLNLHQWLIVIGASLSMIAIVEVVKLIQQTLKKPRGN >gi|269838497|gb|ACXB01000014.1| GENE 321 304861 - 305679 836 272 aa, chain - ## HITS:1 COG:STM1310 KEGG:ns NR:ns ## COG: STM1310 COG0171 # Protein_GI_number: 16764661 # Func_class: H Coenzyme transport and metabolism # Function: NAD synthase # Organism: Salmonella typhimurium LT2 # 4 271 3 270 275 359 68.0 4e-99 MRKMQQEIIEALRVQPTIDPEKEIRRSVDFMKRYLKSVPSLRSLVLGISGGQDSTLAGAL AQMAIRELREETGNDDYQFIAVRLPYGVQADESDAMKAIEFMQADRVVRIDIKPAADAMV AAIEATGVQVSDFNKGNIKARQRMIAQYGIAGETAGIVVGTDHAAESVTGFYTKFGDGGA DIVPLWRLNKRQGKAMLKALNAPVELYEKVPTADLEDERPALPDEVALGVTYQDIDDYLE GKEVSDAAAKKIEGWYQRTAHKRALPYTVFDK >gi|269838497|gb|ACXB01000014.1| GENE 322 305699 - 307162 1326 487 aa, chain - ## HITS:1 COG:L107468 KEGG:ns NR:ns ## COG: L107468 COG1488 # Protein_GI_number: 15673082 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinic acid phosphoribosyltransferase # Organism: Lactococcus lactis # 1 487 6 492 495 713 71.0 0 MVQEYPDDTLTLHTDAYQINMIQTYWQKGIHNQKAIFEVFFRKMPFDNGYAVFAGLERVI DYIENLHFSASDIEYLREVGGYPDDFLEFLKNFHFRGTIRSAVEGDLVFNNEPILQVEGP LADCQLVETAILNVVNYQTLIATKAARIKSVVGSDKLLEFGTRRAQEFDAAIWGTRAAYI GGFDATSNVRAGKKFGIPISGTHAHAMVQYYMNDYDAFKAYATTHHDCVFLVDTFDTLKS GVPNAIRVAKEMGDRINFLGVRIDSGDMAYLSKRVREQLDEAGYPNAKIYASNDLDEKTI QNLKMQGAKIEVWGVGTKLITAYDQPALGAVYKMVSIERDGKMVDTIKLSNNAEKVSTPG KKQVWRISRRADGKSEGDYITLWDEDPREKDSLYMFHPNYTYINKTVTDFEARPLLQTIF KDGKLVYDRPSLAEIKEFSRQSLDSLWDEYKRDLNPQDYPVDLSQECYDHKVSIIKRVRD YVNQLKF >gi|269838497|gb|ACXB01000014.1| GENE 323 307289 - 308011 551 240 aa, chain + ## HITS:1 COG:lin2665 KEGG:ns NR:ns ## COG: lin2665 COG1922 # Protein_GI_number: 16801726 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Teichoic acid biosynthesis proteins # Organism: Listeria innocua # 1 232 1 231 244 196 43.0 2e-50 MKFSTANVLGFNFLQTTKAQFLEQLHTDLVAHQNRFVVTANPEIIMYAKKHPAYAQIIHQ ADYLVADGIGVVKATQHTAHPLPERVTGYELFEELLRWGDAHHSRIYFLGSKPAVIAQVI AKVNRQYPHVEVAGHHDGYFTDFAPIQTEIEQTQPEMVFVATGFPKQEELIQKYRHLSPA IWMGIGGSFDVFAEEVKRAPEFWQKHNLEWLYRLISDPRRIKRQIVLPIFMIKAWWANRK >gi|269838497|gb|ACXB01000014.1| GENE 324 308119 - 308820 594 233 aa, chain - ## HITS:1 COG:SPy1202 KEGG:ns NR:ns ## COG: SPy1202 COG2188 # Protein_GI_number: 15675167 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 4 231 12 238 241 260 57.0 1e-69 MNSPVYIQIHNEIKKAIEAGKWKVGERIPAERELSNHFKVSRMTLRQAISTLVDEGILER KVGSGTYVASQKVQEKVSGVTSFTELTEAQGKKPSSKTISYHTSEPSLSEIEKLKLADGD LVLRMERIRYADGVPICYETATIPEKLVTNFSKSEVTKSLYNTLEERAGLVIGRAEQTVS AMLASEKVAEYLDVKRGAAILRLHQVSYAQDGTPFEYVRTQYVGERFEFYLNR >gi|269838497|gb|ACXB01000014.1| GENE 325 308848 - 309990 1275 380 aa, chain - ## HITS:1 COG:lin0955 KEGG:ns NR:ns ## COG: lin0955 COG1820 # Protein_GI_number: 16800024 # Func_class: G Carbohydrate transport and metabolism # Function: N-acetylglucosamine-6-phosphate deacetylase # Organism: Listeria innocua # 4 375 5 375 377 451 59.0 1e-126 MSTVLRHATIYTGLEKIEDGYIRFGKTIEAVGPMSEYKAQGDDEVYYAGGKIIVPGFIDV HTHGGYGFDAMDGDPEQINEMVNQAVVNEGVTSFFCTTMTQSNENIEKSMRGVAKAAEEN PVIQGVHLEGPFISAKYKGAQPEEYIKDPDAALLGKWNELSGGRVKLITIAPEHAGSDAF EAYCLDHGIVPSVGHSNATRAQLLNSTVTHATHLYNAQREFKHREPGVTGHVMLEDNIYA ELICDGFHIVPDMLKLAYEVKGPERIELVTDSMRAKGIAEGESELGGQKVYVKDKQARLA DGTLAGSVLSFDDAFRNAMKFFGCGIAEAVQMSSVNQAREFGLDSKGTLEVGKDADLNVF DGDLNKLETYSYGKKFAKED >gi|269838497|gb|ACXB01000014.1| GENE 326 310058 - 310846 970 262 aa, chain - ## HITS:1 COG:L135991 KEGG:ns NR:ns ## COG: L135991 COG0345 # Protein_GI_number: 15673866 # Func_class: E Amino acid transport and metabolism # Function: Pyrroline-5-carboxylate reductase # Organism: Lactococcus lactis # 3 260 4 259 262 197 44.0 2e-50 MKLGFIGVGNMAKAIISGLVKKDVAGKDILVHSAHPQNYETFAKQYGLTAVSDNTAVAQQ ADVIILAVKPTVIKRVAEEIQPVLTEEKLVVSIASGVSLADLQAVLGTAQPILRVMPNVN VEIAQGMTAVKATGDLNAAPYQAGVELFARIGKTMEVAENDFPIFAALAGSAPAYAYLFI DALSRAGVKYGLTKANATKIAAQMVQGSAQMVLNSDEVPYALIDKVSSPGGTTVAGLLAM EEAGFSPAVVKGIDATVAKENG >gi|269838497|gb|ACXB01000014.1| GENE 327 311297 - 312268 859 323 aa, chain - ## HITS:1 COG:L55758 KEGG:ns NR:ns ## COG: L55758 COG1064 # Protein_GI_number: 15673789 # Func_class: R General function prediction only # Function: Zn-dependent alcohol dehydrogenases # Organism: Lactococcus lactis # 1 323 1 325 340 446 69.0 1e-125 MRAAVVRNQSDGYVDIVEKQLRPLRDNEALVDVEYCGVCHTDLHVANGDFGEQPGRVIGH EGIGIVREIGADVHSLKVGDRVSIAWFFEGCGHCEYCTTGRETFCREAKNAGYTVDGAMA EQAIVVADYAVKVPDNLDPVAASSITCAGVTTYKAIKESKIRPGEWLTVFGAGGLGNLAI QYAKNVFNAKLAVVDINDDKLALAQKLGADLVINSSKEDPAKIIQERCGGAQAAVVTAVA KAAFNAAADCLKAGGVLVAVALPVDTMDLSIPRVVLDGIQVIGSLVGTRNDLAEAFQFAA DGQVKPIVQTRRLDEVNDIIDEM >gi|269838497|gb|ACXB01000014.1| GENE 328 312748 - 313548 499 266 aa, chain - ## HITS:1 COG:SA2225 KEGG:ns NR:ns ## COG: SA2225 COG1409 # Protein_GI_number: 15928015 # Func_class: R General function prediction only # Function: Predicted phosphohydrolases # Organism: Staphylococcus aureus N315 # 3 265 7 268 268 73 25.0 5e-13 MTSDNHLDINKVDIEQTLATQAQYLKDNHVGIYLIAGDLFNKFSRSKEYVEKLQRRLPRT KVFFIAGNHDMLNDIDYAGLEKLQHPQYLHNQFYDVPGTKWRIIGNNGWYDYSFADNVDK TPEQFWRWKKTFWVDTAIEQPISDIERMDRVLQQTERQLQAAQSKSVLFMTHFAVRHEYI RYTDDYRFWNMANGMMGSRRMEKLLAKYQPKIILSGHLHFHYKPLATAGGIYYNNSVGYH KRRINEWNSDNFITEWTQRLLIIDLE >gi|269838497|gb|ACXB01000014.1| GENE 329 313647 - 315113 1541 488 aa, chain - ## HITS:1 COG:lin0564 KEGG:ns NR:ns ## COG: lin0564 COG3104 # Protein_GI_number: 16799639 # Func_class: E Amino acid transport and metabolism # Function: Dipeptide/tripeptide permease # Organism: Listeria innocua # 3 487 2 491 492 491 55.0 1e-138 MNTQEKDTAFLGQPRGLMTLFFTEMWERFSYYGMRAILIYYMYYAVSQGGLGFSQATAAS VMAIYGSLVYLASVAGGFISDRILGSRKTVFYGGVLIMFGHIALSLPFGSAALLVSIALI VIGTGMLKPNVSEMVGSLYSVEDTRRDAGFSIFVFGINLGALLAPLIVSWVGFQISFHAG FSLAAIGMFFGLVQYYLDGKKYLNKDSLYPSDPIQPEEVKKFSLRVLIGVVVLALILLVM FIANVLTIDNVVLLISIVAIITPVVYFILMFTSNKVSKGERSRLWAYVPLFIAATLFWAI EEQGSVVLALFAADRTQLHYGWINITPANFQSLNPLFIMLYTPIFAWLWTKLGKKQPSSP KKFTYGLVFTGISYLFIALPGLMFGTDGKVNALWLVGSWAIVEIGEMLISPIGLSVTTKL APAAFASQMMSMWFLADAAGQAINAQLVKLYPGHEVSYFIWTGIITIIFAVALWLLSPWI SKKMQGIR Prediction of potential genes in microbial genomes Time: Fri May 27 06:54:06 2011 Seq name: gi|269838496|gb|ACXB01000015.1| Pediococcus acidilactici 7_4 cont1.15, whole genome shotgun sequence Length of sequence - 48582 bp Number of predicted genes - 46, with homology - 44 Number of transcription units - 20, operones - 7 average op.length - 4.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 14 - 811 625 ## PEPE_0074 transcriptional regulator - Term 657 - 692 0.3 2 2 Op 1 9/0.000 - CDS 861 - 2195 991 ## COG0477 Permeases of the major facilitator superfamily 3 2 Op 2 1/0.000 - CDS 2228 - 3013 267 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 4 2 Op 3 1/0.000 - CDS 3036 - 3896 733 ## COG4975 Putative glucose uptake permease - Prom 4084 - 4143 6.9 - Term 4191 - 4238 3.3 5 2 Op 4 . - CDS 4315 - 4692 157 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 - Term 5098 - 5129 0.1 6 3 Tu 1 . - CDS 5197 - 6567 1386 ## COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases - Prom 6640 - 6699 12.2 7 4 Tu 1 . - CDS 6800 - 7978 684 ## COG0183 Acetyl-CoA acetyltransferase - Prom 8004 - 8063 4.5 + Prom 8131 - 8190 9.4 8 5 Tu 1 . + CDS 8389 - 9054 694 ## COG4832 Uncharacterized conserved protein + Term 9136 - 9190 11.5 - Term 9308 - 9354 9.1 9 6 Tu 1 . - CDS 9413 - 11527 1434 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 - Prom 11554 - 11613 4.3 - Term 11878 - 11924 6.1 10 7 Op 1 . - CDS 11953 - 12324 362 ## COG5294 Uncharacterized protein conserved in bacteria 11 7 Op 2 . - CDS 12328 - 13356 801 ## COG1434 Uncharacterized conserved protein - Prom 13562 - 13621 5.6 - Term 14018 - 14052 0.5 12 8 Op 1 . - CDS 14067 - 14765 551 ## gi|270291246|ref|ZP_06197468.1| conserved hypothetical protein 13 8 Op 2 . - CDS 14828 - 15502 372 ## gi|270291247|ref|ZP_06197469.1| conserved hypothetical protein 14 8 Op 3 . - CDS 15499 - 16662 396 ## gi|270291248|ref|ZP_06197470.1| predicted protein - Prom 16720 - 16779 6.0 - Term 16729 - 16772 3.1 15 9 Op 1 17/0.000 - CDS 16817 - 18076 918 ## COG0151 Phosphoribosylamine-glycine ligase 16 9 Op 2 10/0.000 - CDS 18089 - 19624 1414 ## COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) 17 9 Op 3 21/0.000 - CDS 19637 - 20218 466 ## COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN 18 9 Op 4 13/0.000 - CDS 20218 - 21264 702 ## PROTEIN SUPPORTED gi|169632702|ref|YP_001706438.1| phosphoribosylaminoimidazole synthetase 19 9 Op 5 10/0.000 - CDS 21267 - 22736 744 ## COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase 20 9 Op 6 9/0.000 - CDS 22721 - 24925 1690 ## COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain 21 9 Op 7 23/0.000 - CDS 24943 - 25617 428 ## COG0047 Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain 22 9 Op 8 15/0.000 - CDS 25614 - 25874 343 ## COG1828 Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component 23 9 Op 9 1/0.000 - CDS 25861 - 26595 686 ## COG0152 Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase 24 9 Op 10 29/0.000 - CDS 26573 - 27733 619 ## COG0026 Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) 25 9 Op 11 . - CDS 27717 - 28199 510 ## COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase - Prom 28240 - 28299 8.0 - Term 28366 - 28410 7.4 26 10 Tu 1 . - CDS 28594 - 28770 173 ## - Prom 28814 - 28873 4.1 27 11 Tu 1 . - CDS 29042 - 29422 300 ## SSP2332 putative transcriptional regulator - Prom 29528 - 29587 6.0 - Term 29781 - 29826 1.0 28 12 Op 1 . - CDS 29867 - 29980 112 ## 29 12 Op 2 9/0.000 - CDS 30007 - 30753 493 ## COG3279 Response regulator of the LytR/AlgR family 30 12 Op 3 . - CDS 30770 - 32068 711 ## COG2972 Predicted signal transduction protein with a C-terminal ATPase domain 31 12 Op 4 1/0.000 - CDS 32147 - 33778 182 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 32 12 Op 5 . - CDS 33780 - 34505 249 ## PROTEIN SUPPORTED gi|90020817|ref|YP_526644.1| ribosomal protein S16 33 12 Op 6 . - CDS 34530 - 35249 311 ## gi|270291264|ref|ZP_06197486.1| predicted protein - Prom 35421 - 35480 7.7 34 13 Tu 1 . - CDS 35715 - 36299 509 ## COG0352 Thiamine monophosphate synthase - Prom 36367 - 36426 4.9 - Term 36434 - 36496 -0.2 35 14 Tu 1 . - CDS 36514 - 36939 375 ## COG0105 Nucleoside diphosphate kinase - Prom 36979 - 37038 6.4 - Term 36983 - 37027 2.4 36 15 Tu 1 . - CDS 37149 - 37934 644 ## PEPE_0977 hypothetical protein - Prom 38001 - 38060 4.9 37 16 Op 1 . - CDS 38162 - 39181 707 ## PEPE_0977 hypothetical protein 38 16 Op 2 . - CDS 39232 - 39549 163 ## PEPE_0978 hypothetical protein 39 16 Op 3 . - CDS 39551 - 40525 399 ## PEPE_0979 cell surface protein 40 16 Op 4 . - CDS 40593 - 41246 638 ## PEPE_0980 cell surface protein - Prom 41320 - 41379 7.4 - Term 41347 - 41397 10.3 41 17 Tu 1 . - CDS 41479 - 42936 669 ## PEPE_0981 hypothetical protein - Prom 42977 - 43036 6.9 + Prom 43096 - 43155 6.2 42 18 Tu 1 . + CDS 43179 - 43547 368 ## PEPE_1040 hypothetical protein + Term 43597 - 43643 10.4 - Term 43578 - 43637 12.7 43 19 Op 1 8/0.000 - CDS 43778 - 45205 661 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase 44 19 Op 2 7/0.000 - CDS 45216 - 47066 1473 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific 45 19 Op 3 . - CDS 47056 - 47910 601 ## COG3711 Transcriptional antiterminator - Prom 48065 - 48124 6.2 + Prom 48081 - 48140 6.1 46 20 Tu 1 . + CDS 48335 - 48581 215 ## COG0531 Amino acid transporters Predicted protein(s) >gi|269838496|gb|ACXB01000015.1| GENE 1 14 - 811 625 265 aa, chain + ## HITS:1 COG:no KEGG:PEPE_0074 NR:ns ## KEGG: PEPE_0074 # Name: not_defined # Def: transcriptional regulator # Organism: P.pentosaceus # Pathway: not_defined # 1 265 28 292 293 367 66.0 1e-100 MITQPTVTRGMRRLEDELGVTLFDRRISNHIKLNDTGIFAASEASKLLKAESNFTERVLN YHHLNSELVIGSVAPGPIRLLDTIKGALDFEITINHQNILPEEVINDLQNFKEKLIFSDH EILTDTIESIYLGVEYLGVGIAQTNPLTTNSTVTFNDLANLSFLVLQDIGPWKKVVEDHI PHASFLYQADLDAMSEISQNSKFPFFFSNLTQSTATTKTRFSNKKRVAVSIDDPNNRIEF YGTYLKNNRKLVQPLLKKLATNWPE >gi|269838496|gb|ACXB01000015.1| GENE 2 861 - 2195 991 444 aa, chain - ## HITS:1 COG:L127813 KEGG:ns NR:ns ## COG: L127813 COG0477 # Protein_GI_number: 15673857 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 3 432 4 430 442 311 43.0 1e-84 MKKERFGIVLPIVLISYFMILLDNSVVFTSTVKISQDLQMTSRTLSWISTAYVLTFGGFQ LLGGRLGDIFGRKRLFLIGTYIFTFSSLLVGLSVSAPMMIVMRAIQGAGAAILAPTTLAL LMDNYQGKMLQRGINYYGMTAGLGASLGLLIGGLIASFTSWRIGFLINVPVGVGIILLTI KNVKKDQQVKSQSMDILGSLYSAIAIAAVIYSINGEKYRLFALIVSVMFLGLFIRQEGHA KIAIMPLELFKDSTRVGAYIARFFIIGMAFSFLYLAPQVMQNLYHFSPFLASIAFLLMSL PQFVAATQVGRLNTKISPARLAVLASIISIVALAWIVIVGAQNGFWLALAVPLILVGIGQ GLAMSPLTSLGVAHTTADISGSASGVLNTFHQTGQSIGLALVTALTSGIHSYTGSFNAAM LVLLFYATIALLATSSIMLNKKRP >gi|269838496|gb|ACXB01000015.1| GENE 3 2228 - 3013 267 261 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 5 248 1 238 242 107 32 1e-22 MYKDLQDKVAVITGGSKGIGSAIAKRFGQEKMKVIINYNSDPKGAQKAANEVINAGGDAV PVQANIATEEGVNKLLETATEKFGTLDVWVNNAGMEIKSPTHELSLEDWNKVTAIDQTGV FLGSRTALAYFKKNNKKGNIINISSVHEQIPWPTFASYAAAKGSVKLFTQTIAMEYAKEN IRVNAIGPGAINTPINAEKFADKEQYDQTVSMVPMDRIGEPEEVAAGAAWLASDESSYVT GITLFIDGGMTLYPAFKDGQG >gi|269838496|gb|ACXB01000015.1| GENE 4 3036 - 3896 733 286 aa, chain - ## HITS:1 COG:SA0260 KEGG:ns NR:ns ## COG: SA0260 COG4975 # Protein_GI_number: 15925973 # Func_class: G Carbohydrate transport and metabolism # Function: Putative glucose uptake permease # Organism: Staphylococcus aureus N315 # 7 286 10 292 293 172 33.0 1e-42 MTVFWLLLPVLAWGILPVVVSKLGGEPVNQIFGTALGTLIVSLVVEVVLRPTINRISFIW AMLAGVFWIVGQLGQYTSYANIGVSKTMPISTGLQLVGTALVGVVIFGEWPTLMDKVIGS LGILILILGSVMTSTHDHQDDGKANNQQRTITMLILTTLGFVIFNAIPKALSASGVAIFL PESIGMSLAVLLFLTLKRNFKQVVKEKSSWRNLMGGFIFSIASLAYILSVNDNGVNTAFV VSQLSVVISTIGGLLVLKEYKSHRELLFTVAGLILVITGAIVTTII >gi|269838496|gb|ACXB01000015.1| GENE 5 4315 - 4692 157 125 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 1 112 132 238 242 65 31 1e-11 KGNIINMSSVHEQIPWPTFSSYAAAKGGVEMFTKSIAMEYAKDHIRVNAIGLGAINTPIN AEKFADKEQYDQTGSMVPMDRIGEPEEVAAGAVWLASGESSYVTGITLFIDGGITLYPAF KDGQG >gi|269838496|gb|ACXB01000015.1| GENE 6 5197 - 6567 1386 456 aa, chain - ## HITS:1 COG:pli0044 KEGG:ns NR:ns ## COG: pli0044 COG0446 # Protein_GI_number: 18450326 # Func_class: R General function prediction only # Function: Uncharacterized NAD(FAD)-dependent dehydrogenases # Organism: Listeria innocua # 5 452 2 444 454 286 36.0 5e-77 MDKAKVIIVGASHGGHESAIELLDKYDNVDVTIYEMGDFVSFMSCGMQLYLEDQVTDVND VRNFRPEDITSKGGKIYNNHQVTAIDVDQKQVTVKDLKEGTEEQVAYDKLILSSGVTPKN LPVPGTDLENVYLMRGYDWATKIKAALTDDSIKNVAVVGSGYIGIEAAEVFAKKGKHVTL FDFIDRPLGNYLNPEMTEIIDKTLTDNGVQVEMSQSITAFKGDGKVASVETKKGSYPADL VIQAAGVQPNTEWLKGVVDLTDRGFINVDGYLRTNVPDVFAVGDAILPLSIPAGKPSPIA LATTARREAQYVVNHIFEKKPTQIFKGVVGSSALHVFDEHFASTGVNEFTAERSNVEIVN SHYVDHIRPAYVPESEGNVRVDVDITFDPHTHIVLGGAVLSTCDLTAQGNVLALAVEHRL TLEDLAEADFFFQPGYDRQWSLINLAAQHALGYARF >gi|269838496|gb|ACXB01000015.1| GENE 7 6800 - 7978 684 392 aa, chain - ## HITS:1 COG:CAP0078 KEGG:ns NR:ns ## COG: CAP0078 COG0183 # Protein_GI_number: 15004782 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA acetyltransferase # Organism: Clostridium acetobutylicum # 1 390 1 390 392 377 50.0 1e-104 MDEIYIVAAKRTAIGKLGGSLKGFTAAELGGFAIKAAMDQANLKDDYIDQVLMGNVIQAG NGQNPARQAAVSAGINYSVPAITINDVCGSGLSSINLAASLIASKQAKIVIAGGMESMSS APLISRKSRFGQRLGNQILEDAILSDALTDACGHYHMGITAENVASKYHVSRREMDEFAL ASHQKAVNAQNNGRFDKEITSITVNQPDGKYLFNKDEAPRKDTTIEKLGNLKPAFKLDGK VTAGNSSGINDGAAALILASKEAVIAHGLKPLARWVNCSVVGLEPDLMGMGPYYAINEVL KNAGLAKEDIDLYELNEAFAAQSLACIRKLKLKTENVNINGGAIALGHPVGASGARILVS LIYELHDQKLKKGLASLCVGGGMGVGTIIEAV >gi|269838496|gb|ACXB01000015.1| GENE 8 8389 - 9054 694 221 aa, chain + ## HITS:1 COG:L32072 KEGG:ns NR:ns ## COG: L32072 COG4832 # Protein_GI_number: 15672215 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 12 221 1 211 213 121 36.0 1e-27 MLYHLSEWRILMSNEKIEWRKEEKGFSLRKKPQILTIPEQNYFSIAGEGDPNLPDFQKRV QSLYPVSYAIRMSQKKGWNIPNFKLYTVYPLQGYWGIQDQYLNAPVMKKEHFKYIISIKQ PSFVTDEIAKEALERAKPKIDDFLFDQIYFEHRPAQLVAQIVHVGSFDTEPESFQKLEQF IDEAGYQRSEKEHTEIYMSDFRRVAEAKRKTILRVAIQEKQ >gi|269838496|gb|ACXB01000015.1| GENE 9 9413 - 11527 1434 704 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 60 704 149 812 815 556 44 1e-158 MANFYGNDPFFNNDMDDIFNQVFKRMGNPNSDSARYLVNGQSLTPDEFAQYRATGKLPEN AKTIEVSKDGQQALKKGGILEKLGTNLTEQARDGLLDPVIGRENEIQETAEILSRRTKNN PILVGDAGVGKTAIVEGLAQAIVNGNVPEAIQGKEIYSIDLSSLEAGTQYRGSFEENIKD LVKEVKAAGNIILFFDEIHQIIGAGSTGGEDGGKGMADIIKPALSRGELTVIGATTQDEY RNTILKNAALARRFNDVVVNEPSAEDTFKILQGVKDLYEKHHHVKLPDDVLKAAVDYSVQ YIPQRTLPDKAIDLIDMTAAHLAARQPESDEATLKEKLNKLEKEKEQAVKEEDFKRAADL KQRIEETNKQIKNADKKEEVVATVDDVAQSVERLTGIPVSDMGANDIERLKDLDSRLKSK VIGQDEAVEMVARAIRRNRAGFSEGEQPIGSFLFVGPTGVGKTELAKQLALDMFGNKNAI IRLDMSEYSDRTAVSKLIGTSAGYVGYDDNSNTLTERVRRNPYSIVLLDEIEKADPQVLT LLLQVMDDGRLTDGQGNVINFKNTIIIATSNAGFGNEKLTGDDAKDQSLMDRLAPFFRPE FLNRFNGIVEFSHLTKKDLSQIVDLMIADVQKTLAKKDLTLEVTKPAKDWLMEQGYDEAM GARPLRRVIEQQIRDKVTDFYLDHLDVKNLKADLVDDQIVIEAK >gi|269838496|gb|ACXB01000015.1| GENE 10 11953 - 12324 362 123 aa, chain - ## HITS:1 COG:L106083 KEGG:ns NR:ns ## COG: L106083 COG5294 # Protein_GI_number: 15673459 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 11 121 8 115 115 75 43.0 2e-14 MRKRVIASGIIVAIFLFIFGGAYFWYKSNYGTENYYTQIINQGTKIVEKDDSGSQVVDYM YHQPIYDQNGQQVMAKFRGGLERPLKLHAYLKVGYNTKRHQVISWEKVAKKDVPKAALKQ LHE >gi|269838496|gb|ACXB01000015.1| GENE 11 12328 - 13356 801 342 aa, chain - ## HITS:1 COG:L171552 KEGG:ns NR:ns ## COG: L171552 COG1434 # Protein_GI_number: 15672559 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 21 306 21 308 310 196 45.0 7e-50 MLTYLLLILTILVSSIYLYKDRRNFIAGIFFAGSCINLTLLATLGIASYLAGNSRIGIIS LAVFLLLGIIVVPLLVGFSLIINSYVMQTREGKSLTAKLSLIFRINLLLVLVAGATILLA SQYLGRLTGVLLVFIGIDVTFTFIFSCYLFYSFLYQIIPIREKVNYIITLGAGIRSETVT PLLKGRLDKALEYFWKQDGNPKFIVSGGQGPDEPVSEAYAMAKYLKSQHVPEDKIILEDQ STTTLQNMKFSKQKIEKDWKKSGVPKVIFATNNYHVLRSAIYARKAGLNANGVGSPTSFY FLPSALIREYIALLVIYKKTTIAIVLGWILLGLLLAFFRMGE >gi|269838496|gb|ACXB01000015.1| GENE 12 14067 - 14765 551 232 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|270291246|ref|ZP_06197468.1| ## NR: gi|270291246|ref|ZP_06197468.1| conserved hypothetical protein [Pediococcus acidilactici 7_4] # 2 232 1 231 231 355 100.0 1e-96 MMVEVNDKAIVINENNLLNFKDNIEFLKQKSADLQEDKEKIEYEISVVKNKLEDHVSSLF NETDVIDKTLQDISNINIDNSILEAREDELRKSISQLNERIEDKFVDSNELIDETKGWIN LFADKLGVSNVVQNKKYIFTRDIKSISGTIYYKVVFSFKMAYIKTIEKYTGIILPIVLDS PSGREVTNRNITEVIEILNEYFLKNQIIIASINKYKLEGVKEIDLTTDKIFS >gi|269838496|gb|ACXB01000015.1| GENE 13 14828 - 15502 372 224 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|270291247|ref|ZP_06197469.1| ## NR: gi|270291247|ref|ZP_06197469.1| conserved hypothetical protein [Pediococcus acidilactici 7_4] # 1 224 1 224 224 413 100.0 1e-114 MRFLNLLLNYDGKTKNIKLFDKTLIYSKENSVGKSTLLRLMFYSLGYPIPGTYGLKFKKI NTEILFERDGEKYIVKRNDNYIEIYIGLRFIHSCTLTGHDDSWFTYIWGIDSIRVLKNIL GAIYMDQDKGWTLLNRGKVIGNIRFNVRDLLIGLSKKGNDFENELVRLDEEQKLLNKTRQ LQELAKTTEEFKNSSIGELREPQDEQLNNRYKNLKLHRKVISKK >gi|269838496|gb|ACXB01000015.1| GENE 14 15499 - 16662 396 387 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|270291248|ref|ZP_06197470.1| ## NR: gi|270291248|ref|ZP_06197470.1| predicted protein [Pediococcus acidilactici 7_4] # 1 387 1 387 387 727 100.0 0 MDNKINEQLSLDVGDAVKKTRPKNVPAIKNTDASASAFGWRFQIIAGIILSIHNIKEIKF VEIEGSTEDIELYFSDKDPAYIQSKAIQGNIFDKTDVAATKATMAMNTLINTSNRTEGKY SELMYVVNFRNPLNLNNADLIASWNPDLKRPFIRKYNSLPSKAKKFIRARIKTAKKQLEE KYIGSIQYFDLNRLKLATILFSSDEQDEVNYLSLENVIEDLFEKLKLNIRLGKIHVIRDM LITKYLANAGSKEWGEKHKRISKENLIWKIIFGIIDSAPTEFYEELPIGIEGELDIYEHD FVEQQVEDVVIINKVLAGFNEYMKLENERNRKEVFRRFVNHKWSDYKDIFPLNEDPIVQE YGIKMIITRIIYGQRTIAKIKDGVNLK >gi|269838496|gb|ACXB01000015.1| GENE 15 16817 - 18076 918 419 aa, chain - ## HITS:1 COG:lin1876 KEGG:ns NR:ns ## COG: lin1876 COG0151 # Protein_GI_number: 16800942 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylamine-glycine ligase # Organism: Listeria innocua # 4 419 3 420 420 401 48.0 1e-111 MAKVLVIGQGAREHAIGRQLLLSEQVEEVYCAPGNPGMLRSGIKTVPIKELNFEKLVDFA RKQAVNLTVVGPELPLQQGIVDYFNAAGLTIFGPSQAAAKLESSKQFAKKVMQEAGVPTA RYASFQDESSAIQALSKTTYPLVIKADGLAAGKGVAIAKNQSDAVAIIHQLLGEHQFNTT SIVIEEYLEGQEFSLMAFVNDDQIIPMPLSQDHKAAYDGDRGPNTGGMGAYSPLPQFSTE LGKRCVEEVVRPVIHALRQRDISFCGVLYAGLIMTKTGPKVIEFNVRFGDPETEVVLPQL QSDFYELILGLLAQQPPQVKWQNNDIYLGVVVSSENYPQSSAAGIRLSSFNSVPADLTIN YAGVAQDSKGELVSNGGRILCATTKASNITQARTILYSWLNQQKLVGMRYRNDIGKHGE >gi|269838496|gb|ACXB01000015.1| GENE 16 18089 - 19624 1414 511 aa, chain - ## HITS:1 COG:L158710 KEGG:ns NR:ns ## COG: L158710 COG0138 # Protein_GI_number: 15673500 # Func_class: F Nucleotide transport and metabolism # Function: AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) # Organism: Lactococcus lactis # 2 511 3 518 518 583 57.0 1e-166 MKTALLSVSDKTGIVEFAKGLAAQEFRIVSTGGTKKVLEEAGLTVTGVEELTGFPEMLDG RVKTLHPVIHGGLLARRDLPNHLQALKEHQIDLIDLVCVNLYPFKSTIMQDGITEAEAIE QIDIGGPSMLRSAAKNFASVWAVADPADYQAVLEQLAQPHDAIAFRRALALKVFQHTAAY DTLIAQYLGRADEEFPTQLTMTYTKKQAMRYGENSHQKAAFYENALPVPFSIARAKQLHG KELSYNNIKDADAALKMSAEFEQPAVIAVKHMNPCGIGLGKSIQEAWDRAYAADPISIFG GIIVLNRPVDLATAQKMHQLFLEIIIAPSFEKEAFAVLAQKKNLRIMTVVFSKKQASKEL ETVSVMGGLLVQEPDEVAESQANFKVVSKRQPTETELRAMVFGQTVVKHVKSNAIVVATE NQTLGIGAGQMNRIGSVEIAVEQAEKAAGFKNAIMASDAFFPMDDCVEFAAKHGIKAIVE PGSSIKDQASIDKANELGITLVFSGRRHFRH >gi|269838496|gb|ACXB01000015.1| GENE 17 19637 - 20218 466 193 aa, chain - ## HITS:1 COG:BS_purN KEGG:ns NR:ns ## COG: BS_purN COG0299 # Protein_GI_number: 16077719 # Func_class: F Nucleotide transport and metabolism # Function: Folate-dependent phosphoribosylglycinamide formyltransferase PurN # Organism: Bacillus subtilis # 1 178 1 178 195 176 48.0 2e-44 MIKIAIFASGTGTNFVALARHIEETNVPIRIACLVCDQPDAPVVEKAVRLGIPVWTHRLG EFADKTAYEQAILLELQKYDLKLIVLAGYMKIITKVLLEAHPQAIINIHPALLPAFPGRH GIEDALAYGVKVTGVTVHWIDDGIDTGPIIAQRAVPILPDDDVPRLAQRIHQVEHELYFV SLCEVLKQRKLIK >gi|269838496|gb|ACXB01000015.1| GENE 18 20218 - 21264 702 348 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169632702|ref|YP_001706438.1| phosphoribosylaminoimidazole synthetase [Acinetobacter baumannii SDF] # 5 348 13 348 356 275 43 5e-73 MTKNAYEQAGVNIAAGEEIIEGLKQAIGEQGPHILNGIGNFAGCYQLSEDQLDDPVLVAG ADGVGTKVLLAAQTRKVESLGQDLVAMCVNDLLAQGALPLFFLDYLAFSHLESDQTAAIL KGILKACQAQSIALLGGETAEMPGLYQDQHFDLAGFAVGLAVKRELLSSAMVSEGDYLIG LPSTGLHSNGYSLVRKILFTDHHYQFDDQLPGIARPLIEELLEPTRLYGNAIRPLLQKRV LNGIAHITGGGLLENIPRMLQPNQQAEIKLASWPKPAIFKVLTKLGKLSQTDRYQTFNMG IGMVLTVSPQQYQQVGDELDCQKEPYFKIGQVKRRPENAPAVVLLGAD >gi|269838496|gb|ACXB01000015.1| GENE 19 21267 - 22736 744 489 aa, chain - ## HITS:1 COG:SPy0026 KEGG:ns NR:ns ## COG: SPy0026 COG0034 # Protein_GI_number: 15674270 # Func_class: F Nucleotide transport and metabolism # Function: Glutamine phosphoribosylpyrophosphate amidotransferase # Organism: Streptococcus pyogenes M1 GAS # 1 469 1 468 484 641 64.0 0 MATELKGLNEECGIFGVWRDPDAAQRTYIGLHSLQHRGQEGAGIVTRTPTGKFAIHKGLG LLADVFSNPDDLTNLIGRSAIGHVRYGTAGSRGVENVQPLLFHYLQGDVAMAHNGNLTNA ITLRYQLEEQGAIFQSNSDTEVLMHLIQHQKQASFSEKLKASLRQIKGGFAYLILTENAL YAALDPNGFRPLVIGQLANGEFVIASETCALTAVGAEFVRDVEPGELVQIDDQGIKISHF TTETQLAICSMEFIYFARPDSNLYGVNVHRARQRMGKRLAQENPLDVDIVVGVPNSSLSA AAGVAEQLGVPNEMGLIKNQYSSRTFIQPTPKLREQGVEMKLTVLSAVVAGKKVALVDDS LVRGTTSKYIVKMLKKAGAKAVHLMISSPPLKYPCFYGIDIEHTRELMAANLTVKEMCVA IGADSLHFLSLPGLIDAIGLHQDAPNDGLCVAYFDGKYPTPLYDYAADFEVPKTAKDTML SATGVAKEK >gi|269838496|gb|ACXB01000015.1| GENE 20 22721 - 24925 1690 734 aa, chain - ## HITS:1 COG:L173921 KEGG:ns NR:ns ## COG: L173921 COG0046 # Protein_GI_number: 15673512 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain # Organism: Lactococcus lactis # 1 723 1 723 739 865 58.0 0 MMTELTPTEIWDQKLYIQWGLSEDEFNQIRNTLGRLPNFTETGLFAAMWSEHCAYKNSKP LLKQFPTTGQQILQGPGEGAGIVDIGDGQAVVFKAESHNHPTAVEPYQGAATGVGGIIRD IFSMGARPIALMDSLHFGELTDARTKYLVDQTVAGIGDYGNCMGIPTVGGETTFDAIYQN NPVMNAMCVGLLNVADQQRGAAAGGGNSIYYVGAKTGRDGIQGAIFASTEFNDAQATQRS AVQVGDPFAEKQLMEACLELIHNHAEWLVGIQDMGAAGLVSSSAEMGAKAGFGMCLDLDL VPQREADMTPYELMLSESQERMLLCVKQGHEREVEEIFAKYDSTAVKIGEVTEDQRYQLV FKGAAVADVPIHALVDEAPTYHRPSQKPQRVKSDGKQFQPQVKDLTATFNAMLRQATIAN KEAIFERYDAQVQTNTISTVQSDAAVVRIRGTQKALAMTTDANPRYLYLDPYLGGQIAVS EAARNVVATGGKPLAITDCLNFGSPEDPESYYELAQAINGMAAACDVFDTPVISGNVSLY NEFNRQPIYPTPMVGMVGIIEDPAWITTLDFKQTGDLIYVLGETTDALNGSELQKMQLGH VEGKLFDFDLQYEIDQQRLVSDLIHEGLLASVHDLAEGGLAIALAESAFAGEIGFNVQTD LAATELFAENQSRFLVTVTPANREHFEAKTAGKAMLLGRVGGDRLKISTTDDMLDVGLMA AETSWKEALAWQLN >gi|269838496|gb|ACXB01000015.1| GENE 21 24943 - 25617 428 224 aa, chain - ## HITS:1 COG:BS_purL KEGG:ns NR:ns ## COG: BS_purL COG0047 # Protein_GI_number: 16077715 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain # Organism: Bacillus subtilis # 1 217 1 216 227 263 57.0 2e-70 MIYSILRFPGSNCDWDMYYVLRDVLKVTPRFVDYRETALPAETGAVLIPGGFSYGDYLRS GAIARFSPIMSAVQEFAEAGKPVIGVCNGFQILAEAGLLPGALHPNESLNFICRPQKLVV ENCQTPFTRQFSLKQTVTFPIAHGEGNYYCDETTLQDLKEHNQIVLRYVNNPNGSTDNIA GITNQGGNVLGLMPHPERASEAVLGWTDGKILFQSLVASITQHV >gi|269838496|gb|ACXB01000015.1| GENE 22 25614 - 25874 343 86 aa, chain - ## HITS:1 COG:BH0627 KEGG:ns NR:ns ## COG: BH0627 COG1828 # Protein_GI_number: 15613190 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component # Organism: Bacillus halodurans # 1 81 1 81 84 83 50.0 7e-17 MYKAKVYVTYKESILDPQGAAIKKALHHLNYQEVQKVSVGKYFEIQVVDGGQKINEQVQK MCDELLANVNMETYRFEIQDVQEGEK >gi|269838496|gb|ACXB01000015.1| GENE 23 25861 - 26595 686 244 aa, chain - ## HITS:1 COG:L177350 KEGG:ns NR:ns ## COG: L177350 COG0152 # Protein_GI_number: 15673515 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase # Organism: Lactococcus lactis # 1 237 1 236 236 245 54.0 5e-65 MKKTTLIKEGKAKRLYNTDEADVVWVEYLDQATTLNGKRRDQVIGKGALNNQIDCILFEM LGAKGIHTDFIKKISDTEQLNYKVDVIPLEVVVRNAAAGSFQRKFAVPYLREFDQPIVEF FYKSDELDDPFINTNQAVALKIISYAEGEILENLALQINRLLKEQFWQAHLQLVDFKVEF GKTADGKIMLADEISPDSCRLVDLTTKTSLDKDVFRKKTGDLVTVYQEVLRRLINSREEA HVQS >gi|269838496|gb|ACXB01000015.1| GENE 24 26573 - 27733 619 386 aa, chain - ## HITS:1 COG:lin1886 KEGG:ns NR:ns ## COG: lin1886 COG0026 # Protein_GI_number: 16800952 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) # Organism: Listeria innocua # 23 377 19 374 374 366 48.0 1e-101 MKSSGEAGVYLPPATIGIIGGGQLGQMIALAAKAMGYKVGILDPTPNCSAGQVSDFQIVA AYNDQQALLKMAERSDVLTYEFENVDLASLEATQKLAALPQGTNLLYVTSDRLREKHFLA SHDLPVTPYQPVSNPTELNDAITKLGYPCILKSCEGGYDGHGQQDINSEADLPAGRSLVS QTPCILEKRQRFSKELSVMVTRSRDGQVRCFPVAENIHHNHILHQSIVPARVTKEVQQKA QKIARQIAQGLCLRGVLGIEFFMLADERLLVNELAPRPHNSGHYSIEACNISQFEAHVRS ICGLEIPKITQHAPAVMVNLLGQHLTLARQNLAQRPHWHFHDYGKAESRVNRKMGHITLL GELQPSLDSIQAEKIWEISNEENDVN >gi|269838496|gb|ACXB01000015.1| GENE 25 27717 - 28199 510 160 aa, chain - ## HITS:1 COG:CC3284 KEGG:ns NR:ns ## COG: CC3284 COG0041 # Protein_GI_number: 16127514 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase # Organism: Caulobacter vibrioides # 4 156 8 160 163 164 62.0 6e-41 MKKIAVVMGSISDWPTMKETAAMLDKFGVAYERHIISAHRMPSELQKFGEQAQKDGYGVI IAGASGAAHLPGMLAANTILPVVGVPIESHALHGLDSLLSIVQMPSGVPVATTAIGEAGA KNAALLAIEILAITEPRLAKKMIEFRQEQTQEAQSSEKQW >gi|269838496|gb|ACXB01000015.1| GENE 26 28594 - 28770 173 58 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGQKDLLTLAVILRSLGPLVNSGRVFADAKSSAVGTEKLLLVAAQKMQVASGQVKIGG >gi|269838496|gb|ACXB01000015.1| GENE 27 29042 - 29422 300 126 aa, chain - ## HITS:1 COG:no KEGG:SSP2332 NR:ns ## KEGG: SSP2332 # Name: not_defined # Def: putative transcriptional regulator # Organism: S.saprophyticus # Pathway: not_defined # 14 93 16 103 117 70 40.0 1e-11 MVKEFEKNGKKGGWSQNDLAKLLQVSRQTISKWETESAYLDVERLMQLSDLFEISLDALI RDREVPAKKLRVQRARTGMTFWDFLSKRWWLIFIFCVVFSVVASHRHNLNPVLGLPKRNT LEADYI >gi|269838496|gb|ACXB01000015.1| GENE 28 29867 - 29980 112 37 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MDFKTWATKLEYLLLLVVLGVVFVKVRVNLFFYWRHF >gi|269838496|gb|ACXB01000015.1| GENE 29 30007 - 30753 493 248 aa, chain - ## HITS:1 COG:SA1844 KEGG:ns NR:ns ## COG: SA1844 COG3279 # Protein_GI_number: 15927614 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Response regulator of the LytR/AlgR family # Organism: Staphylococcus aureus N315 # 1 243 1 238 238 142 33.0 6e-34 MDILICEDNIEQLYNLEKIIKNYCSKKNLELNVLAASTKAEDILPIIKNKEYASGALFIL DICLDKSNVNGFEVAKAVRQRDRSSTIVFSTTHDEMTYLTFLYKVEALDYVLKDEPVTYK KRIEACIEAAYAKNQAFKNSKVHSERYLTFKIGPKLERILENEVLYAETSANKHRIIIHT VNKVLEIYGSLNNLLEESPKMVRCHNSFVINREKIQVLDLNQMQVLLSSGESCFVSRKYL SKLRQLLV >gi|269838496|gb|ACXB01000015.1| GENE 30 30770 - 32068 711 432 aa, chain - ## HITS:1 COG:lin0043 KEGG:ns NR:ns ## COG: lin0043 COG2972 # Protein_GI_number: 16799122 # Func_class: T Signal transduction mechanisms # Function: Predicted signal transduction protein with a C-terminal ATPase domain # Organism: Listeria innocua # 182 430 184 428 431 127 30.0 4e-29 MYEVKYMVNVAVTAGAQCFIMQIFNFYILKAHLTKQSYPILIVLAPVLSILSGLIANQSP IFSGLFLTAVLVGLNQVITKSDVIDSLFPVSFLLCSLIMYLLISDIFSLSKVSAHLGDFI RLGAFVVGGFIAVYLQSYLTNNLLDFFNKRKIVKLLCKWYIVILAILMFTTVQGKVVVGS NVNSLILEALFVALLLIAVLSMIFSFLNELHRTKLKNELQQIKQLENYAAVLEDGYRNLR KIKHDYVNVISSSLFLLEDQEYADLRKYYKETLTMLNSDDKYDEIRVGDLQNIGNSALKG IIAYKLIQAEHQKLKIHFECIQPIGELQVANVHIVEIVGILMDNAIEYVETNGGQIDVVV TVNEGYRSILIRNSLKRASKTNLREIFQEGYTTKGNHEGIGLSSLRDITAKEDHLEVMTS IENGYFLQEIVC >gi|269838496|gb|ACXB01000015.1| GENE 31 32147 - 33778 182 543 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 334 524 28 225 329 74 26 1e-12 MGKEKLVTINSLWVATMLINILAPLANIGFAFSIKFLIDDGVQQNLTLLYRHLCVSILVV IVFVLGNYLAKVLTSLYTAKQIQKYRMYLMSSMLQENYVSFIKQTTSDYQHALLSEADQI GKDYLMGFFEMVRNLMLVGYSLVAMFMSSGVLAAAILILTAVPIILSAFSAKKGQIQKER ALAAEKTFANKIKEMLAGFLTIKIYQAEKSVNRSYQLFLREYTQKSLKLSITEDVTSTIS EVSGLMIFLVAFGGGMIMSAKGTLSVGSVTAIVQLVNFVVMPINQLGLQNSRYQGAKALL NSLTVFLRKETSSITSGSHQNHFTQAIGFTNVSFRYPETKKQVLTNVNCRLLANHNYAII GNSGSGKTTIFNLLLKLFSPDQGKITIDGNDLNSISAKWWYSQVAVVQQEVFIFNDSIKY NVTLGHLYSDQQIVQALQEAGLGEFLATVNGDLNYNCGENGKNLSGGQRQRISIARAFIQ EKSIILLDEATSALDNKLSNEIEETLLAKTKITAIVITHKTSVVNLARFDKVFRLVNKKL IEV >gi|269838496|gb|ACXB01000015.1| GENE 32 33780 - 34505 249 241 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|90020817|ref|YP_526644.1| ribosomal protein S16 [Saccharophagus degradans 2-40] # 8 211 12 217 318 100 31 2e-20 MKKQNSILEIKGLLKQIDNEDTLHNVNLNFKSGRVYGLLGPNGAGKTTLMKCILSLSRVD GGKIVFDGEEITNGQNFMKRGSIGSLIETPQFPSSYTVQNVIDEQLEMMNIRVGQTMLAD LLSQMQLTTKQNDNAANLSLGWRQKIGITRAMCTLPKLLLLDEPFNGLDLSAVEQVKKLI VKLASRGTCVVLTSHILEELQNIADYLYLVDAQVIKEIKDSELQDGIRDYYLKKFEKESG I >gi|269838496|gb|ACXB01000015.1| GENE 33 34530 - 35249 311 239 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|270291264|ref|ZP_06197486.1| ## NR: gi|270291264|ref|ZP_06197486.1| predicted protein [Pediococcus acidilactici 7_4] # 1 239 1 239 239 348 100.0 2e-94 MFKITKMCSKQVGSKRLVGTLTIILGAALIITTVILHGLVKENKLMELLPDSFINVPKLV QYWAVYYYFFSLFIRAGVLLLQGFLAFQIIARSRQTQRLSQIATFPFSRRSILAGMFLMI CIFSGMILLLLHSSIVALTYLKFKRFLPGTYQVFLVKDWLLDLLYGFIALIPASVALLIP KVSYVVGSAVLMIIILCNAGTLSFGTNSIQLPLITLLTLLVIATLLGLVAFKKFALLEL >gi|269838496|gb|ACXB01000015.1| GENE 34 35715 - 36299 509 194 aa, chain - ## HITS:1 COG:SP0725 KEGG:ns NR:ns ## COG: SP0725 COG0352 # Protein_GI_number: 15900622 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine monophosphate synthase # Organism: Streptococcus pneumoniae TIGR4 # 7 190 8 191 210 181 53.0 7e-46 MLEKPLLYLVTDRLGLNQQQFLERIELACQGGVDLLQLREKEISSAEYYKLAGHVKKITD RYQIPLIIDDQVAIAQAVDAAGVHLGQADLPVAVARRILGPHKIIGATTKTVAQARRAVE EGANYLGVGAIFPTTTHVKTVHTSVVTLKRIKQEAKITVFAIGGLNAENLSVLRNTNVDG VAVVSAIMKATQPQ >gi|269838496|gb|ACXB01000015.1| GENE 35 36514 - 36939 375 141 aa, chain - ## HITS:1 COG:AF0767 KEGG:ns NR:ns ## COG: AF0767 COG0105 # Protein_GI_number: 11498373 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside diphosphate kinase # Organism: Archaeoglobus fulgidus # 4 139 2 133 151 127 49.0 8e-30 MNQERILILVKPDGVNLGHIGEVITRLERKGYEIDALKVTRATKSQLHQHYAKLVDKPFF KEIETYMLEGKIVAMIASGTRVIEVFHRMAGATNPSEAAFGTIRGDLGREWPDGLLRNVV HSSDSVESAEREIKIWFPELI >gi|269838496|gb|ACXB01000015.1| GENE 36 37149 - 37934 644 261 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0977 NR:ns ## KEGG: PEPE_0977 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 260 421 680 681 271 48.0 2e-71 MSTTYPEVSGYFPVKNDASKDTGYFMPYDQTVVHRYRKKQQMHFELKDKDDNIYVSRFTN KGKVAFSFAQATAGKITLVASCKGEQQVLKEYTNAPKRVTDEFMYSFPKAWLGEQVTFYV EDANHQRSNKEVRTIKQEHGPQMSLPEQINFKTLNIPAETTTVSLPKEEFLKIADQSKVD QRYWTVKLCEQRPLTSKENWVLSQRLRFGEVSINNVSQIVYQGKGNVSLDLSKYLQIELN PLDRVGDYHGELRWTLEDAPE >gi|269838496|gb|ACXB01000015.1| GENE 37 38162 - 39181 707 339 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0977 NR:ns ## KEGG: PEPE_0977 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 305 14 313 681 405 66.0 1e-111 MSLWWLAPGVKASLRPLPNLDGFKWANQAVTPAENTFIMHSGAHTEVTPLKGDATANRLA VDQKTNESQALIKNVGFYKGNTVNLLVTLKRSKSNLKGGTLSFSKTYFLGIDVADEVVVT YKFVDEHEKPLAVKTAFNYYGLNTNKFIGYKDPGGVIEAVYANNPTNIMYDNENQDGAQW LYLKNLTAGIPWRDPRQSFEVVTKSISEVNFIVHNNDSSPSSLVYQTEFLAKPETPPAYA EDAYFKLADRGGVYLAAHQTVSSGDSAVEVNFGGLQEIEKSGQYETEQTTVTDFDGKDVS NYFNFYYIYDAKGNKTIRFQAKKILPIKFLIPFYIIRFI >gi|269838496|gb|ACXB01000015.1| GENE 38 39232 - 39549 163 105 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0978 NR:ns ## KEGG: PEPE_0978 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 102 1 100 112 83 43.0 3e-15 MKFWGGLILLALLVNVTPDVLASDRVNTEAGITFYQENNANQVVPMKKVSLSKQDSPKKP QSPVNSDYVRCLPQTNESTSWGLFLIGLIVVSYVLVRRWYKKFYE >gi|269838496|gb|ACXB01000015.1| GENE 39 39551 - 40525 399 324 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0979 NR:ns ## KEGG: PEPE_0979 # Name: not_defined # Def: cell surface protein # Organism: P.pentosaceus # Pathway: not_defined # 9 324 38 352 352 385 66.0 1e-105 MVSHTNTRASTTKNNQVSFDAEAILPKNQQSKASYFDLRVRAGSSEKLTIKLRNITNQKQ RIIIETNNAITNQNGAIDYSKSKAQLLGTPSFKAMVSGPHSVILKPKEVRKVEFPLKIPT KGFKGTVLGGFYCYSKPLKNSPKEQGVSLLNNFAYTIGAKLECTNEVIHPKLTLKKVFPG LANGYLTVFATLENPQPVLLSRLDMRATVTKKGQSAVLKQVTKKISIAPRTRFCLPIDWD NEPLKSGRYVLTIHLKSPAGEKWLLKKEFSIKGDAEKLNKSAVEVKKPADNSLIYLMMDF LVMVILILGVYIYRLKHKNKKTEK >gi|269838496|gb|ACXB01000015.1| GENE 40 40593 - 41246 638 217 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0980 NR:ns ## KEGG: PEPE_0980 # Name: not_defined # Def: cell surface protein # Organism: P.pentosaceus # Pathway: not_defined # 1 216 1 216 217 329 79.0 4e-89 MRKKVIITLALGILALNSTTVMASQISEATNKTDVTLTAGSGEDVHPVVPDDTHDDDSGT GDMGALSIPYASNITFGQQEIKQEDTDYYALNQKPHVQVNDTRGGAKGWTLGVAISPFVG ANGKELVGAKMSLSNGKVATKNNESPKPEIVQNSFELNKEYQEVMTAKEGQGAGAFAAVF AGQDGKNENVKLHVPRAGVEAQSYTADLTWVLTDAPV >gi|269838496|gb|ACXB01000015.1| GENE 41 41479 - 42936 669 485 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0981 NR:ns ## KEGG: PEPE_0981 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 223 485 1 263 263 375 71.0 1e-102 MKTFLTASSLKKVKLLEYLLESNTWCSTKELAEVMGVTEKSILNYLDEFEQLFKETNQKI QLFNDRNKNVQILKEEDFPIYPIYLKFYRASYNYKLIDFMFQNPHLRLTDYADSQFTSIS TVSRYAKLLKQYFSRYRLDFLPYRLDLKGSEVNIRSFYYYFYWNSTREITDSWPFKADLK EIKAYITNFEEVYGIELEPLQWKTFAYWMAITLERSSHAPVQIELAKKKVVDNDPSFALM RKWHLIGKLPLKESELYFLYQVIYSFGIIDGNSNYENSYALAHQKSQTASYQAVVNLAKV VKEHFNFQLATTDLELVFNFIAFHERSAFFFGNTDVFFNRSYITELEAERPRECQIMNNF HQELLRNASESVKKLLSNWQQLFLNYYFILDYYGLFVKQAVPIKILVKDDVHHTHRLWLM NKIRAYFGHSFTFEFFDYKTPVSQVDLVISNFYVNTGDTPLILMKVLPTERNWRQLGGML YQLSR >gi|269838496|gb|ACXB01000015.1| GENE 42 43179 - 43547 368 122 aa, chain + ## HITS:1 COG:no KEGG:PEPE_1040 NR:ns ## KEGG: PEPE_1040 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 120 1 120 120 207 81.0 1e-52 MRLWHEELISKLPRAQLLGQHREVAALRGKGWGKKHATVDYVFTHSPYKLYQFHLLVMAE MQARGYHPDTKWFDSTYRGLHCPAYLALAPCPLTDPIYPEHDQQYLAECLENLRSKGIQI MI >gi|269838496|gb|ACXB01000015.1| GENE 43 43778 - 45205 661 475 aa, chain - ## HITS:1 COG:ECs3773 KEGG:ns NR:ns ## COG: ECs3773 COG2723 # Protein_GI_number: 15833027 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Escherichia coli O157:H7 # 1 475 6 479 479 461 44.0 1e-129 MKFPDNFLWGGSIAAHQTEGAWSEDGKGPAIMDYVTVGEDGQPRKIHQTIDPECRYPSHI GIDFYHRYLDDVKLLAQMGFKALRISIDWSRIYPNGDDLEPNPKGIEFYINLVDELKKYR IEPIVTLYHFEMPINLVKKYGSWQNRSVVELYLKFCKTMFTALRGKVKYWVTFNEMNHID PRTEASDIFTYIIAGLKYSEMKDKSQTLATIGYNMTLASCKAVRLGHEIDASNKIGCVFG IEPVYPINSEPENIMNAFRQMDRDFYQIDAMCNGEFPQYKLAEYEDDGIQLAFSKNDSED FKEGKIDFIGMNYYASSVTEYHGAKEAKSALFGGLTNPFLETSKWGWTIDPVGIRYLLNY TYRKYGIPIMITENGLGAEDRLDDNGKIHDDYRIDYLRKHVQEVKKAVEIDQVNCFGYLT WGPIDLVSATTGQMSKRYGFIYVDLDDSGRGTLQRLKKDSFDWYKKVIKSNGKDL >gi|269838496|gb|ACXB01000015.1| GENE 44 45216 - 47066 1473 616 aa, chain - ## HITS:1 COG:BS_bglP_2 KEGG:ns NR:ns ## COG: BS_bglP_2 COG1263 # Protein_GI_number: 16080978 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Bacillus subtilis # 94 450 4 363 364 185 34.0 2e-46 MKYKEFNENIIKYVGGKENIQAVVHCMTRLRFTLKDRNKANTAALKDLDGVIDVVSNNVA YQIIIGTHVVDVYDELIDLLGISDNDKEEVHKVKKNWIKAVLDVVSESMTPILEPIICAG LLAAFLSIISLTGLISPNSPTYQIFDALRVSVFYFLPILMAMSSAKRLGASPYLAVALAA TILSESINGVKGLNLFGIPLPQITYANSFIPILLAVWFMGYVTKFVKRIVPNALQYFMTP LLIMLITLPATLLIFGPLGYYLGEGIIAFFNLLMKYVGSWFVMMLYSALQPFIVMLGAGN FIMPVVASLISANGYDPAFISSCTISDIAVGGSMLGYFLRTRNRKQKQLFGTVTLSAILG VTEPAIYGVFVKYRRPFIAVMIGGGLGGLFAGLTGVKAYSIAWGLFGLPAYIGKGHFMNL WLMVASVIISFVGAAIAAFLLGVPAEDSAEEVPGNVENAVASKLQTVSLSSVVKGDLVQL AEVGDAAFSTGAMGKGIGIKPIDDHIHAPIDGKVTAIFPTKHAIGITGSNGIEILIHIGI DTVELEGKYFALQVKEGETVSQGDVLAVVDFSKVVEAGYDPTVMVIITNTNDFLDVIPSV NQIVTDKDQMLNVVLG >gi|269838496|gb|ACXB01000015.1| GENE 45 47056 - 47910 601 284 aa, chain - ## HITS:1 COG:lin2530 KEGG:ns NR:ns ## COG: lin2530 COG3711 # Protein_GI_number: 16801592 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Listeria innocua # 1 283 1 283 285 197 38.0 2e-50 MKVKKILNNNVAIISKGTHESIAYSPGIAFKKKIGQQIEEKEISKLYVLDSKDRLEHLSF LLTHSDKKIITLVNKIVDYGENYLKVKVTDYLYLALLDHISFALKRGQKGQFIASPLVWE VKKFYPQYYEIGIKAINWLNQTYEVNFPEDEAIPISLHFINVQDEQINVEQKVKDITVLR DLLNIIKYHFNINFDETSINYMRLVTHLQYFIDRLNCHELSTKTDVNVLYEQIRTIYPEA FRAVQKIDKYISKSFGQEIFPDEYTYLMIHINRVTSRKDVGNEV >gi|269838496|gb|ACXB01000015.1| GENE 46 48335 - 48581 215 82 aa, chain + ## HITS:1 COG:SA2239 KEGG:ns NR:ns ## COG: SA2239 COG0531 # Protein_GI_number: 15928029 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Staphylococcus aureus N315 # 2 82 36 116 545 121 74.0 4e-28 MEAASVAGPAAIFSWIIGFIVIAVIAYNYIELGTMFPESGGMSKFAQYSHGSLVGFIASW ANWISLITLIPIEAVASVQYMS Prediction of potential genes in microbial genomes Time: Fri May 27 06:55:56 2011 Seq name: gi|269838495|gb|ACXB01000016.1| Pediococcus acidilactici 7_4 cont1.16, whole genome shotgun sequence Length of sequence - 65833 bp Number of predicted genes - 66, with homology - 62 Number of transcription units - 22, operones - 14 average op.length - 4.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 1240 935 ## COG0531 Amino acid transporters + Term 1285 - 1347 10.3 - Term 1280 - 1324 4.0 2 2 Tu 1 . - CDS 1573 - 1926 262 ## COG1393 Arsenate reductase and related proteins, glutaredoxin family - Prom 1954 - 2013 5.8 - Term 2037 - 2077 3.0 3 3 Op 1 1/0.167 - CDS 2127 - 3473 1426 ## COG0793 Periplasmic protease 4 3 Op 2 . - CDS 3545 - 3769 247 ## COG4479 Uncharacterized protein conserved in bacteria 5 3 Op 3 3/0.000 - CDS 3801 - 4391 556 ## COG4698 Uncharacterized protein conserved in bacteria 6 3 Op 4 2/0.000 - CDS 4401 - 5351 725 ## COG2755 Lysophospholipase L1 and related esterases - Term 5364 - 5409 9.7 7 3 Op 5 . - CDS 5414 - 6259 941 ## COG1307 Uncharacterized protein conserved in bacteria - Prom 6417 - 6476 7.7 + Prom 6132 - 6191 5.7 8 4 Tu 1 . + CDS 6432 - 6638 64 ## + Term 6685 - 6719 1.6 - Term 6525 - 6571 8.2 9 5 Op 1 16/0.000 - CDS 6655 - 7137 438 ## COG0262 Dihydrofolate reductase 10 5 Op 2 1/0.167 - CDS 7155 - 8105 929 ## COG0207 Thymidylate synthase 11 5 Op 3 4/0.000 - CDS 8110 - 10005 1886 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains 12 5 Op 4 . - CDS 10008 - 11216 1017 ## COG0617 tRNA nucleotidyltransferase/poly(A) polymerase + Prom 11242 - 11301 4.8 13 6 Tu 1 . + CDS 11332 - 12201 991 ## COG1284 Uncharacterized conserved protein + Term 12212 - 12254 5.2 - Term 12199 - 12241 5.2 14 7 Op 1 . - CDS 12265 - 12735 671 ## COG3613 Nucleoside 2-deoxyribosyltransferase 15 7 Op 2 . - CDS 12793 - 13044 239 ## PEPE_1075 hypothetical protein 16 7 Op 3 . - CDS 13112 - 14383 968 ## COG0457 FOG: TPR repeat - Term 14393 - 14431 6.1 17 8 Op 1 3/0.000 - CDS 14449 - 14724 174 ## PROTEIN SUPPORTED gi|148826039|ref|YP_001290792.1| 50S ribosomal protein L35 - Prom 14820 - 14879 5.1 - Term 14819 - 14854 3.1 18 8 Op 2 3/0.000 - CDS 14909 - 16216 1456 ## COG1160 Predicted GTPases - Prom 16236 - 16295 2.5 - Term 16241 - 16281 0.2 19 8 Op 3 21/0.000 - CDS 16356 - 17567 1835 ## PROTEIN SUPPORTED gi|116492841|ref|YP_804576.1| 30S ribosomal protein S1 20 8 Op 4 . - CDS 17642 - 18322 240 ## PROTEIN SUPPORTED gi|15639271|ref|NP_218720.1| bifunctional cytidylate kinase/ribosomal protein S1 21 8 Op 5 . - CDS 18338 - 19063 604 ## PEPE_1081 LysM domain-containing protein 22 8 Op 6 4/0.000 - CDS 19137 - 20561 1320 ## COG0514 Superfamily II DNA helicase 23 8 Op 7 . - CDS 20558 - 21571 399 ## COG4955 Uncharacterized protein conserved in bacteria 24 8 Op 8 12/0.000 - CDS 21580 - 22266 454 ## COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases 25 8 Op 9 21/0.000 - CDS 22296 - 22886 506 ## COG1386 Predicted transcriptional regulator containing the HTH domain 26 8 Op 10 . - CDS 22864 - 23616 530 ## COG1354 Uncharacterized conserved protein 27 8 Op 11 . - CDS 23606 - 23965 289 ## PEPE_1087 riboflavin biosynthesis acetyltransferase RibT 28 8 Op 12 . - CDS 23981 - 24868 762 ## COG4974 Site-specific recombinase XerD 29 8 Op 13 . - CDS 24872 - 25738 471 ## PROTEIN SUPPORTED gi|212640476|ref|YP_002316996.1| Uncharacterized protein conserved in bacteria containing two ribosomal protein S1-like RNA-binding domains 30 8 Op 14 . - CDS 25751 - 26209 457 ## COG2707 Predicted membrane protein - Prom 26309 - 26368 9.8 - Term 26451 - 26489 5.0 31 9 Op 1 12/0.000 - CDS 26510 - 28273 2068 ## COG0469 Pyruvate kinase - Term 28288 - 28331 -0.4 32 9 Op 2 3/0.000 - CDS 28350 - 29318 1068 ## COG0205 6-phosphofructokinase - Prom 29361 - 29420 3.4 33 9 Op 3 . - CDS 29442 - 32777 2654 ## COG0587 DNA polymerase III, alpha subunit - Prom 32797 - 32856 5.2 + Prom 32822 - 32881 8.2 34 10 Tu 1 . + CDS 32904 - 33080 267 ## PEPE_1095 hypothetical protein + Term 33134 - 33187 10.5 - Term 33128 - 33168 2.0 35 11 Op 1 . - CDS 33188 - 35791 1614 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 36 11 Op 2 9/0.000 - CDS 35803 - 36594 540 ## COG0327 Uncharacterized conserved protein 37 11 Op 3 5/0.000 - CDS 36572 - 37282 556 ## COG2384 Predicted SAM-dependent methyltransferase - Prom 37311 - 37370 4.5 - Term 37320 - 37369 7.9 38 12 Op 1 31/0.000 - CDS 37378 - 38517 1284 ## COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) 39 12 Op 2 . - CDS 38535 - 40391 1442 ## COG0358 DNA primase (bacterial type) - Prom 40568 - 40627 3.7 + Prom 39962 - 40021 3.7 40 13 Op 1 . + CDS 40263 - 40505 65 ## 41 13 Op 2 . + CDS 40506 - 40682 75 ## - Term 40622 - 40672 7.5 42 14 Op 1 19/0.000 - CDS 40735 - 42807 1886 ## COG0751 Glycyl-tRNA synthetase, beta subunit 43 14 Op 2 3/0.000 - CDS 42807 - 43706 927 ## COG0752 Glycyl-tRNA synthetase, alpha subunit - Prom 43743 - 43802 2.9 - Term 43726 - 43774 13.1 44 15 Op 1 16/0.000 - CDS 43992 - 44753 509 ## COG1381 Recombinational DNA repair protein (RecF pathway) 45 15 Op 2 3/0.000 - CDS 44756 - 45670 894 ## COG1159 GTPase 46 15 Op 3 11/0.000 - CDS 45695 - 46078 386 ## COG0818 Diacylglycerol kinase 47 15 Op 4 17/0.000 - CDS 46062 - 46532 701 ## COG0319 Predicted metal-dependent hydrolase 48 15 Op 5 1/0.167 - CDS 46537 - 47505 1018 ## COG1702 Phosphate starvation-inducible protein PhoH, predicted ATPase 49 15 Op 6 9/0.000 - CDS 47517 - 47960 402 ## PROTEIN SUPPORTED gi|42519249|ref|NP_965179.1| 30S ribosomal protein S21 - Term 47976 - 48008 4.0 50 15 Op 7 . - CDS 48019 - 48204 299 ## PROTEIN SUPPORTED gi|116492871|ref|YP_804606.1| 30S ribosomal protein S21 - Prom 48261 - 48320 10.8 + Prom 48271 - 48330 7.1 51 16 Op 1 . + CDS 48404 - 49213 748 ## COG1806 Uncharacterized protein conserved in bacteria 52 16 Op 2 . + CDS 49236 - 49613 291 ## + Term 49731 - 49777 11.4 - Term 49719 - 49765 6.6 53 17 Op 1 . - CDS 49858 - 50748 788 ## COG0648 Endonuclease IV 54 17 Op 2 3/0.000 - CDS 50751 - 51956 886 ## COG1887 Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC 55 17 Op 3 . - CDS 51949 - 53106 628 ## COG1887 Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC 56 17 Op 4 3/0.000 - CDS 53119 - 53997 874 ## COG1284 Uncharacterized conserved protein - Prom 54155 - 54214 8.7 57 17 Op 5 13/0.000 - CDS 54279 - 56060 1576 ## COG0173 Aspartyl-tRNA synthetase 58 17 Op 6 . - CDS 56076 - 57350 1354 ## COG0124 Histidyl-tRNA synthetase - Prom 57443 - 57502 9.9 + Prom 57665 - 57724 1.8 59 18 Tu 1 . + CDS 57746 - 58633 845 ## COG0860 N-acetylmuramoyl-L-alanine amidase 60 19 Tu 1 . - CDS 58618 - 59241 660 ## COG0546 Predicted phosphatases - Prom 59264 - 59323 4.2 - Term 59261 - 59316 2.2 61 20 Op 1 7/0.000 - CDS 59332 - 59781 419 ## COG1490 D-Tyr-tRNAtyr deacylase 62 20 Op 2 . - CDS 59791 - 62022 1808 ## COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases - Prom 62042 - 62101 1.8 - Term 62041 - 62082 3.4 63 21 Op 1 . - CDS 62130 - 62459 273 ## PEPE_1121 hypothetical protein 64 21 Op 2 9/0.000 - CDS 62474 - 63211 741 ## COG1385 Uncharacterized protein conserved in bacteria 65 21 Op 3 . - CDS 63221 - 64168 1275 ## PROTEIN SUPPORTED gi|116492885|ref|YP_804620.1| 50S ribosomal protein L11P methyltransferase - Prom 64240 - 64299 4.8 - Term 64408 - 64459 11.2 66 22 Tu 1 . - CDS 64494 - 65792 1045 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 Predicted protein(s) >gi|269838495|gb|ACXB01000016.1| GENE 1 2 - 1240 935 412 aa, chain + ## HITS:1 COG:SA2239 KEGG:ns NR:ns ## COG: SA2239 COG0531 # Protein_GI_number: 15928029 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Staphylococcus aureus N315 # 5 412 128 535 545 481 64.0 1e-135 NWTHHFFKNGTITTSGLLVVFCFILIFTLLNYWSVSLLTRFTSLISIFKIAVPLITIIFL TLSGFHPENYGYSLTEFMPYGSASIFAATSASGIIFSFNAFQTVINMGNEVKNPKRNVGL GVGISLLISAVLYLVLQSTYITSIPSSLIAQSGWHGINFESPFADLAILLGIHWLSVLLY LDAFISPFGTGVSFVASTGRALAAMSSNNHFPKILGKINAKYGIPRIAMAFNAVLSMVMV SIFRSWGTLASVISTSTLIAYLTGPITVVSLRKMASRFNRPVRLKAIKFMAPLAFILASL AIYWAMWPTTVEVILVILLGLPIFIYYEWRLHWKETINQLRSSLWLIVYLIFLSIMSYIG SADFNGKNLIHYPFDFIVIIIAAFIFYVWGMRSRIITVSFGNAREVNNRVKK >gi|269838495|gb|ACXB01000016.1| GENE 2 1573 - 1926 262 117 aa, chain - ## HITS:1 COG:BS_yusI KEGG:ns NR:ns ## COG: BS_yusI COG1393 # Protein_GI_number: 16080333 # Func_class: P Inorganic ion transport and metabolism # Function: Arsenate reductase and related proteins, glutaredoxin family # Organism: Bacillus subtilis # 3 116 4 117 118 113 48.0 8e-26 MTTFYCYSKCSTCKKAEKWLKEQQVSYNKIDLVEQPPTKAQMLDFFAKSDQNLRYFFNTS GIDYRKMKLKDKIDTMSKEQAAELMSQNGKLIKRPLMVDDTKVTCGFNTAVYEKNWL >gi|269838495|gb|ACXB01000016.1| GENE 3 2127 - 3473 1426 448 aa, chain - ## HITS:1 COG:BS_ctpA KEGG:ns NR:ns ## COG: BS_ctpA COG0793 # Protein_GI_number: 16079017 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic protease # Organism: Bacillus subtilis # 14 447 36 465 466 308 43.0 2e-83 MAGVMTFLLGFTNSSADRQTNLNRIASVYNQIDANYYRNVDSNKLATGAINGMLATLDDP FSNYLTDSDASSLNDSVAGSFGGIGIQVIKKNGHIEIMSTIDGTPAQKAKLKAGDQIIKV NGKSVASQSLSKTMSIMRGKVGTTVELELQRGDTTFTKKLKRAKIPVETVTGKLLKNKVG YITISSVAEKTASELKKNLKKLDHQGAKSYIIDVRNNPGGLMQQALKMSSMFLKDGQPIM QVKTRSGKPEVYKASRKLDGGYKVKKPAVVIINGESASAAEIFAAALHQSAGIPLVGAQS YGKGTVQNITQYTDNDELKLTIAKWLTPDGTWINKKGLTPDYKADYPEMAYITTFNHHKT YQVGQSSTDIKNLQIALKDLGYYSGKVTKDYTESVAQAVQAYQQANHLTVTGKTDAKTMR SIEQAVINALSKSDPALNKAEQVLAKQK >gi|269838495|gb|ACXB01000016.1| GENE 4 3545 - 3769 247 74 aa, chain - ## HITS:1 COG:BS_yozE KEGG:ns NR:ns ## COG: BS_yozE COG4479 # Protein_GI_number: 16079026 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 3 68 2 67 74 73 54.0 9e-14 MRKTFYQFLMTQRNPEPNDEVEEFANQAFFDQSFPKQDRDFEEISKYLELNGSYLQNMTI FDQAWQRYLESEQN >gi|269838495|gb|ACXB01000016.1| GENE 5 3801 - 4391 556 196 aa, chain - ## HITS:1 COG:SPy1491 KEGG:ns NR:ns ## COG: SPy1491 COG4698 # Protein_GI_number: 15675395 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 7 189 8 192 195 84 31.0 9e-17 MNKYLYNFWKWGFLTLVALLLAGSVYVGFKASLPVPQFEKTAKKDPHKFDQVPITLNKTQ LNDLSAAYLNQFQKSKDFTYQFRIGKRYAILGGQIEVLGQKVQFALTMVPSVTKGGNIRL KAHSLSVGTLKLPAKVVLKYISRNYELPKWVIINGDQALLRLDQIKTTNKVSFQVEKIDI VHDQFKFIINVPKSAN >gi|269838495|gb|ACXB01000016.1| GENE 6 4401 - 5351 725 316 aa, chain - ## HITS:1 COG:SPy1492 KEGG:ns NR:ns ## COG: SPy1492 COG2755 # Protein_GI_number: 15675396 # Func_class: E Amino acid transport and metabolism # Function: Lysophospholipase L1 and related esterases # Organism: Streptococcus pyogenes M1 GAS # 45 305 41 273 286 134 32.0 3e-31 MKKVLKEIVFSIVGVLLIATVFLWAMGFFKSSQPNHSPNPTPTVVKKSVKLKTKQPQPAT SQVKILALGDSLTQGVGDTQDKDGYQKRLKKQIVQKNLAGKATVYNEGVSGERSDQILHR LQNTKRIQKEAAKSDVLVVTAGGNDLFQNLQKNVSESESQILVRVNKVSLEYQNNLRKIF EIARKNNPKIKIVMVGIYNPFYVYFPNVTSITQAVTTFNTTAKATTDEFDDATFVNIDAL SKGQFTTKQQIKKLKKQSTEDDIAVVEKSRVEARKVDSKEKNAYLSNEDHFHPNDKGYDM MTSKIKSALQKLEVFD >gi|269838495|gb|ACXB01000016.1| GENE 7 5414 - 6259 941 281 aa, chain - ## HITS:1 COG:SP1112 KEGG:ns NR:ns ## COG: SP1112 COG1307 # Protein_GI_number: 15900979 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 1 276 1 274 279 237 48.0 2e-62 MTQIKIVTDSSCGVTDEEIKKYNISIVPLSVMIDDTVYVERETISNEEFIQKMAESNSLP KTSQPPLGKFVEMFDRLGADGSQVISFNMLAAISGTVHTAQQAAELSKSDVTVVDSQFTD RALAFQVIEAAKMAQAGATKEEILERAAYIRDHTKLYLGIVNLENLVKGGRLSKVSGMLG GLLNIKLLLQVKDGKLDIANKVRGMKAMKKIWLDIYEEMKQSGKIKSVGISHVHADEMVE DMKKHVGELFPVKDIVVRETVPIIATHTGMGAFCLLYYSED >gi|269838495|gb|ACXB01000016.1| GENE 8 6432 - 6638 64 68 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLFRDEKDLKKLFWCFDFKRAKTCAKSQLVPLNQKLTIMPNSGIMVNFQLMLANYPTFVP LSFVMAIL >gi|269838495|gb|ACXB01000016.1| GENE 9 6655 - 7137 438 160 aa, chain - ## HITS:1 COG:BS_dfrA KEGG:ns NR:ns ## COG: BS_dfrA COG0262 # Protein_GI_number: 16079240 # Func_class: H Coenzyme transport and metabolism # Function: Dihydrofolate reductase # Organism: Bacillus subtilis # 1 160 1 161 168 125 40.0 4e-29 MITMIWAEDDRHGIGRQQSIPWHIPDDMAFFRQTTLDHSVIMGRKTFESIGRPLPSRTNL VLTHHPEHLPSEVRGFSSYEELLASLTKTEKHFVIGGSAVYHKLMPVADELLITKVTGDF QCDVFAPVVDKQKFTLQEERPGKSVPGVPDHVFQQWIRRN >gi|269838495|gb|ACXB01000016.1| GENE 10 7155 - 8105 929 316 aa, chain - ## HITS:1 COG:lin1988 KEGG:ns NR:ns ## COG: lin1988 COG0207 # Protein_GI_number: 16801054 # Func_class: F Nucleotide transport and metabolism # Function: Thymidylate synthase # Organism: Listeria innocua # 4 316 2 314 314 470 67.0 1e-132 MLEEQYLNLERYVLENGHQKSDRTQTGTLSTFGYQMRFDLSEGFPLLTTKRVPFGLIKSE LMWFLKGDTNIRYLLQHKNHIWDEWAFKKWVESAEYDGPDMTNFGHRSLIDSDFNAQYQV QKDRFTKLILEDDAFAAKYGDLGNVYGSQWRAWKTSTGETIDQIENVIDLIKNHPDSRRM IVTAWNPEDVPTAALPPCHSLFQFYVADGKLSCQLYQRSGDIFLGVPFNIASYALLTAMI AKTCGLEVGEFVHTLGDAHIYSNHIAQVKEQLARDPRPAPRLKFNQVHENIFDYEPADIV VEGYDPHPTIKAPVAV >gi|269838495|gb|ACXB01000016.1| GENE 11 8110 - 10005 1886 631 aa, chain - ## HITS:1 COG:lin1989 KEGG:ns NR:ns ## COG: lin1989 COG0488 # Protein_GI_number: 16801055 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Listeria innocua # 1 629 1 630 630 565 48.0 1e-161 MKTLKAKNLTKTYGEKQLFQSINFTINENDRIGLIGTNGSGKTNLLNAVAGIDPADSGEF EAPNDYRIAYLKQSSEINQYETVRDFIYSGDQEVFRVIKRYEQVLAQYTDNPTSNTIFEK FTKAEDEMNRLDAWNTESNIKTILTQLHVDMLDAPINQLSGGQVKRIALAQALLEPADLL LLDEPTNHLDFDSIEWLEKYLADYKGALLLVTHDRYFLDRVTNHIWELSFGHLYEYEGNY AKYVEQKALREQQNEASQEKKYKLYKQELEWIKRGPKARGTKQQARINKFEKLDQDVHAP KEIDQDVEIGLTQQRLGKKVIEIKHLDLQVGGHPIARDFTKLIQAGDRIGITGANGAGKS SFLNAIAGKLPIQGGTIDIGETVKIGYYTQKMEPIPEDKRVINYIKEIGQEVVNRDGEKI SVTSLLEQFLFPKFMHGSLIKKLSGGEKRRLYLIKVLMQQPNVLLLDEPTNDLDIATLTV LENYLEHFNGTVLTVSHDRYFLDKVSDQLLIFDGNGQIEQYTGQISDYLKQRAQTTSTSA TAAKPRTEPTSVAKPKKKKKRTYAEEKEWQTIEAEIDKLEQKSKTITEQMNEYAADYGKL SELQTELNQVSDELENKMARWEYLESFEEGE >gi|269838495|gb|ACXB01000016.1| GENE 12 10008 - 11216 1017 402 aa, chain - ## HITS:1 COG:SP1554 KEGG:ns NR:ns ## COG: SP1554 COG0617 # Protein_GI_number: 15901397 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA nucleotidyltransferase/poly(A) polymerase # Organism: Streptococcus pneumoniae TIGR4 # 7 397 1 392 394 339 46.0 5e-93 MVQLEKMPQEFEEARNVLQQIEEAGYEAYFVGGSVRDTLLGKPIHDVDIATSAYPAEIKQ IFKRTVDTGIEHGTVMVLTGEHSYEITTFRTESGYQDFRRPDQVTFVRSLKEDLMRRDFT INAFALREDRTVIDVFDGLTDLKQHKIRAVGDPKARFHEDALRMMRGVRFASQLDFVIEP QTLAAIKMNSSLLAKISVERTLVEFQKMMLGTNPNRGLADMVATRLHEYCPGLAGKGAVL QELLAYPLSQLENETQIWALLAWMLQLRGAQINRFLKQWKTSNELIRHVTATVRVLSMLD STGVDRIILFEAGANNVANAVRVAQILGHDAQGWLDTYQTLQIKSPKELAVTGKDLIANQ IITPGPQMGRILNSLKAMVINDQLPNQPEALFTAARKLGKDD >gi|269838495|gb|ACXB01000016.1| GENE 13 11332 - 12201 991 289 aa, chain + ## HITS:1 COG:lin2023 KEGG:ns NR:ns ## COG: lin2023 COG1284 # Protein_GI_number: 16801089 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 5 288 3 286 288 266 46.0 4e-71 MQKDESIRLLDFVMITLGCCLYGLGLAVVNIPNHLAEGGITGVTLILRALFGIDPALSTL LINVPLILIGYRFLGKRSLIYTIFGTLALSFWLYFWQRIPISLDIHHDMFIAGILAGIAG GFGSGVVYRFGGTTGGTDVVARILEKRRGIAMGHTLFALDAVVLTISLCYIDVLHMMYTL LAAYVFSRLVSLTQVGAYAGHGLIIISDQNEEIAEALMNELGRGASYIKMTGAYSNSEHQ MVYCVIGPNELNLAKRIIERVDPRAFTSVIDVHEAIGEGFTYDSDKQPE >gi|269838495|gb|ACXB01000016.1| GENE 14 12265 - 12735 671 156 aa, chain - ## HITS:1 COG:L92464 KEGG:ns NR:ns ## COG: L92464 COG3613 # Protein_GI_number: 15672475 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside 2-deoxyribosyltransferase # Organism: Lactococcus lactis # 2 145 8 148 159 94 41.0 1e-19 MANSVYLAAPFFSDLQIERVRKVEELLKKNSTIDGDNIYVPMDHQYEAEKFGTFKWQVGV FEADVRQVRKSDVVVAILDYAKQDEEVISDPGTVFEIGAAFENGKPVILVQFDDTDKINL MLARSHAAFFHGEDIKNLATYDFNELTPKYSDLTVF >gi|269838495|gb|ACXB01000016.1| GENE 15 12793 - 13044 239 83 aa, chain - ## HITS:1 COG:no KEGG:PEPE_1075 NR:ns ## KEGG: PEPE_1075 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 83 16 98 100 82 50.0 6e-15 MRKNQFTAEQPADFTKFNDASFNEQQTLMKNVIAKNYQIKLLTSFNERTVYGVVGKNATG QFFYALDKNLPEKISTAELKTLL >gi|269838495|gb|ACXB01000016.1| GENE 16 13112 - 14383 968 423 aa, chain - ## HITS:1 COG:lin2036 KEGG:ns NR:ns ## COG: lin2036 COG0457 # Protein_GI_number: 16801102 # Func_class: R General function prediction only # Function: FOG: TPR repeat # Organism: Listeria innocua # 9 408 4 409 417 189 31.0 1e-47 MNNEEANYSKRALDALESGQIDEFNRLYGWALRKDDDETLYNLAGELYALGFDGKALRIY EKLIERYPGDHELPVLAAEILVDQGENDRALANLEKIPEDSEFYVSALMVEADLYQTEEL YEVSERKLLAAEQLAPDEPAIQLALGELCYTMQDYPKAVTCYLRLIKQGIPMMSQINIVE RLAASYAASGKFEKAIAYYEQIHDEDLTPDILMQEGITYLQLNEVQRAQTVLEKVVDMDS SYSSVYPYLIDAYRRDEEWDKGLTAAQEGLAADQYNPDLYLLAAEMAEHAHDDELVEKYL QKAVELAPDNQAAIIRITDFYNRQGRYAETLNYATDEITDAQLNWNVALAEWKTEDFAGA QKHFSAAANDLADSAPFLLDWYHFSKENGQLEQAVDVARKYVKLVPTDLNMQDELADLEV QGY >gi|269838495|gb|ACXB01000016.1| GENE 17 14449 - 14724 174 91 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148826039|ref|YP_001290792.1| 50S ribosomal protein L35 [Haemophilus influenzae PittEE] # 4 91 6 93 96 71 38 1e-11 MANKAELVENVAKKTGLTKKDATAAVEAVFGSIQDDLKKGDKVQLIGFGTFEVRNRAARK GRNPQTGKEIEIAASKVPAFKPGKALKDAVK >gi|269838495|gb|ACXB01000016.1| GENE 18 14909 - 16216 1456 435 aa, chain - ## HITS:1 COG:lin2051 KEGG:ns NR:ns ## COG: lin2051 COG1160 # Protein_GI_number: 16801117 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Listeria innocua # 1 435 1 436 436 638 70.0 0 MGNPTVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYTHSEWLGRKFNLIDTGG IQIGEEPFLEEIRDQAELAINEADVIIFIVSVREGVSDADEAVAKILYKADKPVILAVNK VDNPELRQDIYDFYSLGFGDPYPLSGSHGLGLGDLLDAVIANFPEKEAQEDDEAIRFSLI GRPNVGKSSLVNAILGEQRVIVSDIAGTTRDAIDTRFTSNGDEFVMVDTAGMRKKGKIYE NTERYSVMRAMKAIDNSNVVLVVLNAEEGIREQDKRIAGYAHEAGRAIVIVVNKWDKLKK DNHSLSNFEQSIRQEFAYLSYAPIIFVSAVTKQRLSQLPALIKRVDENHRRRVQSSTLND VLMDAIAVNPTPSENGKRLRVYYGTQVSIQPPTFVIFVNDPDLMHFSYERFLENKIREAF DFEGTPVHLIERRRK >gi|269838495|gb|ACXB01000016.1| GENE 19 16356 - 17567 1835 403 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116492841|ref|YP_804576.1| 30S ribosomal protein S1 [Pediococcus pentosaceus ATCC 25745] # 1 403 1 402 402 711 90 0.0 MAENDVNQNGDLLNAINSVEEVKVGDVVTGEVLDIDDDRQVIVGIQGAGVEGVVPLRELS TQHIDNINDEVKIGDELELVVISRIGDDKEGGSYLLSRKRLLARKVWKEIEEKAANGEEL EVPVTQVVKGGLVVDAGVRGFIPASMIENRYVDDLNAYKGQTLKVKIIEIKPEDNRLILS HKAVINAERAEKRQEVLSSLQEGEVVTGKVARLTNFGAFVDLGGIDGLVHISEISYERVE KPSDVLKPGEEVQVKVLSVDPERERISLSIKQTQPGPWENIAEKAPVGAVLDGKVKRLTD FGAFVEVFPGVEGLVHISQISHKHIATPADVLEEGQDIKVKVLEVHPEERRLALSIKALE EAPKSEKRASKAPATDYSKDMPEETTGFTLGDIIGDSLKDSDK >gi|269838495|gb|ACXB01000016.1| GENE 20 17642 - 18322 240 226 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15639271|ref|NP_218720.1| bifunctional cytidylate kinase/ribosomal protein S1 [Treponema pallidum subsp. pallidum str. Nichols] # 7 220 37 284 863 97 30 2e-19 MDKKLQIAIDGPASAGKSTVAKIVAKDLSYIYCDTGAMYRAVTLKAMQNHFDLNDEEKIA TMLTETNLNFEPGDPVQKVFLDGKEVTEAIRRTDVTNAVSTIAAQEQVRKVLTDWQRDLA KDGGIVMDGRDIGSAVLPNAEVKIFLVASVQERAERRYKENIAKGMDTDLEQLKKEIEIR DHKDSTREISPLTKAADAIEVDTTAMSIEEVVQKILDIVHETVFRK >gi|269838495|gb|ACXB01000016.1| GENE 21 18338 - 19063 604 241 aa, chain - ## HITS:1 COG:no KEGG:PEPE_1081 NR:ns ## KEGG: PEPE_1081 # Name: not_defined # Def: LysM domain-containing protein # Organism: P.pentosaceus # Pathway: not_defined # 36 241 10 225 225 100 52.0 5e-20 MSSKNKKNKKSIEKASSNEVTEERAANEKVANSENKAAASTTNPKESAHAEQTATNEHAA EEQVASKSERGEFHKQKKRTKTIVGSMIWVVIILAIASLAYYMTQRQDFQQKTANTTTTQ VAKSSKKNSASKAKSSSKKHEKDVSSSASSTSSTTKKNDDKSKSTSVESSASSSTASSSS ATTQSSSSASSAEGASYATVQAGQGMYRVAVNNGISVQKLMELNGLNSNSEIEPGQQLRV R >gi|269838495|gb|ACXB01000016.1| GENE 22 19137 - 20561 1320 474 aa, chain - ## HITS:1 COG:lin2056 KEGG:ns NR:ns ## COG: lin2056 COG0514 # Protein_GI_number: 16801122 # Func_class: L Replication, recombination and repair # Function: Superfamily II DNA helicase # Organism: Listeria innocua # 11 471 6 466 467 383 43.0 1e-106 MTISDQLIYDKLKDRFGFQEFRPGQLEILHKLLEGRSTLAILPTGAGKTLIYQMYGLLVP GTVVVVSPLLSLIKDQIQRLRLSGERQIAELTSQVAFTDQLYVLNHLAEYKFIFLSPESL QKAEVQGRIARLKIALMVVDEAHCIVQWGKSFRPDYLRIGQVRQQFGNPLTLALTATASR NTRSEILRYLALNVQTTEQYVASVDRKNIFLDFLTTDNVADKEELLLNLIDQLPGAGIVY FSSRKIASQVSELINRQLGQTAAPYHAGMSTYDRLQVQSQFQKNQLDVICATSAFGMGID KADIRYVIHYHMPGDIESYVQEIGRAGRDGKSSVAITLYATGDELIPTILNSYSLPNTDG LPLSNGEQQTEEQQALVNYYREFGLTESQLKKLFKKQAQQKEQQILEMLKLIRTTGCHRR FLLQHFDEPFTKHDEQCCGSISDFTEFGLQEAHDSSKLAMMGWKDKLAQIFAAN >gi|269838495|gb|ACXB01000016.1| GENE 23 20558 - 21571 399 337 aa, chain - ## HITS:1 COG:BS_ypbB KEGG:ns NR:ns ## COG: BS_ypbB COG4955 # Protein_GI_number: 16079360 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 16 304 21 313 352 73 23.0 5e-13 MKPEDGLIFFDRHQSRRPKVILNLLKNKLTVSALYGGLEYGLLNYIGFWKKLDRQEFLNS LDQAVKMGYLTGERDALKLTERGVQQQSRVLPPPEASLRVKFDPAIKLWLMATQVVSEYS FKNTRYIPISEDSQINFMVKKWFANWKQSETSRPKLVQEYQQALGALCEQLPKEEADWFV NYLPNHHDLGLTVEQLARVNNVSPFQMELRLRLIFRKIFSSVINNQVTPFNQLIGMVMQP SVLPKSTWQTLQLLQKGYNIEKIAELRRVKINTVKEHLLMMAILLDNFPYQQFLSPGVAQ MEIAGVDFQTALQEYPELTFFDFRLSQIRFIKERQRQ >gi|269838495|gb|ACXB01000016.1| GENE 24 21580 - 22266 454 228 aa, chain - ## HITS:1 COG:BS_ypuL KEGG:ns NR:ns ## COG: BS_ypuL COG1187 # Protein_GI_number: 16079373 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases # Organism: Bacillus subtilis # 1 222 8 229 229 248 58.0 6e-66 MAEAGVASRRKSEKLIAEGHVKVNGRVVKELGTKVEQHDRIEVDEVPIQREQNVYFLLNK PRGVITSVSDDKNRKTVMDFFPDVTERIYPVGRLDYDTSGAVLMTNDGELANRLMHPKFK FEKTYTAKVKGLVNGSALKRLEEGVVIDHRKTAKAKAKLISTDLEKKTSIVQLTIHEGRN HQVKKMFMAVGHPVQKLHRNSYSFLSIDDVQSGKWRALKLSEVKRLKR >gi|269838495|gb|ACXB01000016.1| GENE 25 22296 - 22886 506 196 aa, chain - ## HITS:1 COG:SP1875 KEGG:ns NR:ns ## COG: SP1875 COG1386 # Protein_GI_number: 15901703 # Func_class: K Transcription # Function: Predicted transcriptional regulator containing the HTH domain # Organism: Streptococcus pneumoniae TIGR4 # 1 177 1 177 189 145 48.0 4e-35 MNKEQKVEGLLFVAGAEGIALASLAELTGYAKPAVTAILEKLAEKYHQDPNSALSLIQTG GTYKLVTKPELASLIKKYFARSNQAGLSAAALEILAIVAYRQPITRIEIDQIRGVHSGTT LQNLVLRNLVKVTGRLNEPGRPKTYGTTAEFLDYFGLQDLTELPALPEDTENSAEDQDNE DLFLQEFESKMTTNKE >gi|269838495|gb|ACXB01000016.1| GENE 26 22864 - 23616 530 250 aa, chain - ## HITS:1 COG:lin2065 KEGG:ns NR:ns ## COG: lin2065 COG1354 # Protein_GI_number: 16801131 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 10 232 5 235 249 142 41.0 5e-34 MKAKVYNLPDVKLADFEGPLDLLLHLIRQSQMSIYDIRISEITSQYLQYLHTQETLRLNI AGEYLVMAAKLTEIKGKMLLPHEEDEELVDEDPRTDLVDQLIEYQIFKTASENLRDLEGE RQRSFSRPEMEIDPATVTRLAPGIELTDLQKALQKVLARQALLEPVSRTVQTEKVSIEEQ MDFVKRRIQQRSVCRFEDLFTIRVNREVLVTTFMAILELAKNQQIKLSQDSADQSITIKI GEVNEQGTKS >gi|269838495|gb|ACXB01000016.1| GENE 27 23606 - 23965 289 119 aa, chain - ## HITS:1 COG:no KEGG:PEPE_1087 NR:ns ## KEGG: PEPE_1087 # Name: not_defined # Def: riboflavin biosynthesis acetyltransferase RibT # Organism: P.pentosaceus # Pathway: not_defined # 1 119 1 119 119 180 82.0 2e-44 MLVKYTESKRQIAMGLLSTIDAFGSIDVVQQVLERYTKKNRQIYLERRNGTYIGLVLIVL EADCVVVERMAFIANEETVFNENEIFRSLLSIFPDRRLMGSLKTSAMIERFEMGQVDES >gi|269838495|gb|ACXB01000016.1| GENE 28 23981 - 24868 762 295 aa, chain - ## HITS:1 COG:lin2069 KEGG:ns NR:ns ## COG: lin2069 COG4974 # Protein_GI_number: 16801135 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinase XerD # Organism: Listeria innocua # 1 295 1 297 297 309 53.0 5e-84 MDDLINDYLHALKVERGLSDNTIVSYRQELRHLQNFLQEQHIADIKDVDRYTILNYLDAL KQTGRARSSSIHTISSLRKFFKYLLLNDQIQTNPMANIDPPKRAQHLPSVLTTEEVERLL KVPDTSKPLGIRDRAILEVMYATGLRVSELIALNLNELHLEMGLIETVGKGNKQRIIPIG DVAIQWLERYINGPRRALLGAKRYNEIFLNQHGHPLTRQGVWKNLKAQVQKAGIKKNITP HTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITQQRLVDVYDKYHPRA >gi|269838495|gb|ACXB01000016.1| GENE 29 24872 - 25738 471 288 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|212640476|ref|YP_002316996.1| Uncharacterized protein conserved in bacteria containing two ribosomal protein S1-like RNA-binding domains [Anoxybacillus flavithermus WK1] # 33 278 29 272 285 186 43 4e-46 METLLGKKIQAKVIDENDQFYFAQAEDGLTYRIDKSEIKKPLKKDSNFSGFAYENANHER QMTREAPKATTGRYGWGTVVKVRKDLGVFVDIGLNNKDVVVSLDELPTETKLWPHVDDQL LVCLTVDNKERMWAHPADSTVFKAISVRANKKMINQNVSTTAYRLKLAGTLVITDQFQLG FIHPSERDREPRLGEKVQARVIGIHPDGTLNLSLKPRNYEALGDDAAMILALLQHRSDRQ LPFNDHSNPSDIKEHFGISKSRFKMAIGHLLKAGVIEQTADGIVLKEQ >gi|269838495|gb|ACXB01000016.1| GENE 30 25751 - 26209 457 152 aa, chain - ## HITS:1 COG:lin1603 KEGG:ns NR:ns ## COG: lin1603 COG2707 # Protein_GI_number: 16800671 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 16 147 18 149 153 119 56.0 3e-27 MESWLFLIGILLVSWLGKNQSLMIATIAVLLFKLLPNSAKLFSIIDKQGINWGVTIISVA ILVPIATGRIGIMDLINSFKSPVGWIAVACGILVSLLSYQGVGFLSASPEVTVALVMGTI IGVVFMNGIAAGPIIASGIAYLIIQLLQIQIK >gi|269838495|gb|ACXB01000016.1| GENE 31 26510 - 28273 2068 587 aa, chain - ## HITS:1 COG:lin1605_1 KEGG:ns NR:ns ## COG: lin1605_1 COG0469 # Protein_GI_number: 16800673 # Func_class: G Carbohydrate transport and metabolism # Function: Pyruvate kinase # Organism: Listeria innocua # 1 477 1 475 475 558 63.0 1e-158 MKKTKIVSTLGPASTSVDTIVKLIEAGANIFRFNFSHGDHEEHLGRYNMVKEAEKITGKS VGILLDTKGAEIRTTVQKDGNQEYHTGDKARISMNASLETTKEKIAVTYPGLYDDVHVGG HVLFDDGLLDFKIDEKDDENRELVVHATNNGVLGSRKGTNAPGVSINLPGITEKDASDIR FGLESMNINYIAASFVRKPQDVLDIRELLEEKNMEDVQIFPKIESQEGIDNTDEILKVAD GIMIARGDMGVEIPAENVPLVQKTLIKKCNALGKPVITATQMLDSMIENPRPTRAEASDV ANAVWDGTDATMLSGESANGDYPVEAVATMAKIDQKAENAMADDGNLQINTFDQSDVTET VAAAVARAAKNLGVKTIVAATQSGYTARMISKYRPDADILAITFDERVRRGLMVNWGVHP IVAERPATTDEMFELAANKAVDLGFAKEGDLILVTAGVPVGESGTTNMMKLQLIGSKLAS GQGVGDETVIGKAVVATSADEANQKAVEGGILVTKTTDKDYLPAIEKSSALVVENGGLTS HAAVVGISMGIPVIVGVQNATSILSDDELITVDSRRGIIYHGASNSL >gi|269838495|gb|ACXB01000016.1| GENE 32 28350 - 29318 1068 322 aa, chain - ## HITS:1 COG:lin1606 KEGG:ns NR:ns ## COG: lin1606 COG0205 # Protein_GI_number: 16800674 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphofructokinase # Organism: Listeria innocua # 1 321 1 318 319 376 61.0 1e-104 MKRIGIMTSGGDAPGMNVAIRAVARKAISSGLEAYGINYGFAGLVAGDIHEFKATDLDDM VSQGGTMLYSARYPEFAQEESQLKGIEQLKKFGIDALVVIGGDGSYHGALRLTEHGYNTI GLPGTIDNDIPFTDFTIGFDTALNTAVDAIDKVRDTAKSHQRVFAVQVMGRHAADIALWA GVASGADAVIAPGFDYDVEAIANKLKRNRANGKDYGIIVIAEGDANSEAAPEFIKKLKQY GDFDARATVIGHVQRGGVPSAKDRVLASKMGAYAVELLLEGKGGLAVGILDNKVQAHDIT DLFDAKHQADDSLYQLSEDLSF >gi|269838495|gb|ACXB01000016.1| GENE 33 29442 - 32777 2654 1111 aa, chain - ## HITS:1 COG:lin1609 KEGG:ns NR:ns ## COG: lin1609 COG0587 # Protein_GI_number: 16800677 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit # Organism: Listeria innocua # 1 1031 1 1036 1108 804 43.0 0 MAFVPLHVLSSYSLLTSPTKIAELVKTAKDRGYSAMALTDNNTMYGAIEFYQACLKNDLK PIVGLTIWLDSTRGIDNQFALVLLAKNINGYHNLLRISSAKMTEISAKPTLTFNDLRAYW KDLVVIVPPVRSEVNELLERGMANDAQALIEEYQQSIDSPDLFLGINGQQSHVMRQTLTQ MAQKAGIGCLPLPSVEYLNEEDHFATQVLRDIDSGKVLQHPELLAKGGGNNWLKPATEFV REYGQLGDAEMLTQLDRVVAGINLEIPIVSPRLPQFATPNQQDSFTYLTQLCQQALTQLK ENVPDAERYQARLDHELAVIKEMGFADYFLIIHDVVQFAHQKQILTGPGRGSAAGSLVAY LLKITSVDPLQYGLLFERFLNPERAQMPDIDLDIPDDQREVVLQYVHDRYGHQHVGQIIT FGTLAAKQAIRDVARVFGEMPNKINQISALIPNKLNITLKQAAQTSHRLRDFIESSPKNR FMFETACRLEGLPRHFSTHAAGIVLSQDELVESVPVQDGNEGMLMSQYSKNFVEQVGLLK MDFLGLRNLSLMNNILELVHRTEPQFEIEKIELNDPQTLQLFQWGDTSGVFQFESTGIRN VLRKVHPTNFGLVVAVNALYRPGPMENIDRFVKRKDHLEPYRFPNQILERVLGETYGILV YQEQVMEVASAMGGLSLGQADLLRRAMSKKKHAVIEQMRTNFIQGAVQKGYSEKIAQQVY RYIENFANYGFNKSHAVAYSKLAFQLAYLKAHYPGDFYTALLNSVVGNDTKTKTYIQELK RLGIPTLAPDINQSSATYTYQNGQIRMGFTAIKGLRRDFIQHLLAERERGGQFKTVDDWL RRMGNQGIDEDVIDKLIFAGALDSFGYNRAELDEYLPELLKGITFSGQNVDLFQKLMPTI KSRPDLPLDEKLDREEELLGTYVSAHPVERFAELIKQRRFVQIQQFKAGEKVTSIVYIRS IRSIRTKKGEPMAFAKISDQTDECEAVIFPRVYQATQLLESKRVLQLTGKVEQREDQLQL IVDQIEAPRQIAHGQTHWLIKVPSRKNPADFQKRLFGMFKEYHGKVPVTLVYRDTNQQRA LSEKFSLQGTPEVKKAFENLLGTDQISLVEK >gi|269838495|gb|ACXB01000016.1| GENE 34 32904 - 33080 267 58 aa, chain + ## HITS:1 COG:no KEGG:PEPE_1095 NR:ns ## KEGG: PEPE_1095 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 2 55 1 54 57 74 75.0 1e-12 MMKQIVVIFWAFIFGEVLGYIGGALEVLPYSSLEIGTMAAITALITSNLIPWLSKKYR >gi|269838495|gb|ACXB01000016.1| GENE 35 33188 - 35791 1614 867 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 5 863 5 812 815 626 41 1e-178 MNPEKMTTALQEALGEAQQIAVNRQHQEIGVPELFKFLAQPDQTVGTLLSELGVSNQTVQ AELDRELAQISIVSGSQVSYGQSISTELNQLLIQAEQRRQKLQDEFIAVDTVFLALFDLN NNEFANFLKQQGVTAKKALEKIEEFRGGEKVTSKEQESGYKALEKYGTDLVKRAHNENPD PVIGRDEEILDVIRILSRKTKNNPVLIGEPGVGKTAIVEGLAQRIAKGDVPSNLANKTII SLDMGSLIAGAKYRGEFEERLKTVLKEVAKADGQIILFIDEIHTIVGAGKTEGSMDAGNL LKPMLARGELHLIGATTLDEYRENIEKDKALERRFQRVLVKEPSVEDTISILRGLKERFE IHHGVRIHDNALVAAAKLSSRYITDRYLPDKAIDLIDEASAKIKVEMNSNPTELDQVNRQ LMRLQVEERALKNETDEESAKRLKALQKELATTKEEKVKLESRWAAQKAEIKKISDKKNE LDKAKHDLQEAESAYDLDRAAVLQHGTIPTLEKELQDLENESENTHQEWLVEESVTDREI ARVISQMTGIPVARLVEGEREKLLHLADKLHQRVIGQDEAVQSVADAVLRSRAGLQDPNR PIGSFMFLGPTGVGKTELSKALAEALFDSEDNMVRIDMSEYMEKESVSRLVGAAPGYVGY EEGGQLTEAVRRNPYSIVLFDEIEKAHPEVFNILLQVLDDGRLTDGQGRTVNFRNTILIM TSNLGSELLLKNQSENSIDADIRQQVRDVLQGYFKPEFLNRVDDIIMFTPLSKTDVRKIV RKLVTQLSDRLADQEIKLNISEPAQDYIVQQAYDPAYGARPLRRYIVKNVETPLAKEIIS GRVKPKSAVMIDVLNDQLVFQNEAQIK >gi|269838495|gb|ACXB01000016.1| GENE 36 35803 - 36594 540 263 aa, chain - ## HITS:1 COG:SP1609 KEGG:ns NR:ns ## COG: SP1609 COG0327 # Protein_GI_number: 15901449 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 1 261 1 263 265 251 45.0 9e-67 MLAKQLIERFEEMAPKESAFPKDPVGLQIGDLNQPIHRVLVTLDVRPEVVAEAITKGCDF IFSHHPLIFRPVRNLDLTVPQNQMYATLIKHSIGVYSAHTNLDVAAGGMNDWLAQAMSLT EVQPVYSAHYDRNIGRIGSLAQPQTVNEFAKTLKEVFQLDGLRVVAEDNQALVRKVAVVG GDGGKFYPEMMAAGADAFVTGDVYYHTGHDMLADHLNVFDVGHNVEKICIDELTKLFNQW KATNQWQVEVCPSTVNTNPYQFM >gi|269838495|gb|ACXB01000016.1| GENE 37 36572 - 37282 556 236 aa, chain - ## HITS:1 COG:L84257 KEGG:ns NR:ns ## COG: L84257 COG2384 # Protein_GI_number: 15673054 # Func_class: R General function prediction only # Function: Predicted SAM-dependent methyltransferase # Organism: Lactococcus lactis # 1 228 1 229 230 187 46.0 1e-47 MNSNNLSPRLKVVASLVPKGSKIADIGSDHAYLAINLVRNQIATAAIAGEVAPGPLTNSK MEIEKNQVSDLIDARLGDGLAVLNPEDHVDVICIAGMGGLLIRRILEEGQVKLSGVQRLI LQPNVGEYELREWLITHGYQITHEDIVAEDYHLYEIIVAEPGQMQLTETELTFGPFLMQA ANATFLRKWQRELKRLKSIQDNLERHPQHGGEKLAEVSKKIAQIEEMLTNVGETIN >gi|269838495|gb|ACXB01000016.1| GENE 38 37378 - 38517 1284 379 aa, chain - ## HITS:1 COG:lin1491 KEGG:ns NR:ns ## COG: lin1491 COG0568 # Protein_GI_number: 16800559 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) # Organism: Listeria innocua # 29 379 23 374 374 467 77.0 1e-131 MASKKSEIKRKKSESIISSPEFKKAVNQIIKAQKSEHKVKYTKLTRDLIDKFKLTDEDVD DLIQRIEDAGISVVDENGDPSEKALKAQEISKEELDDTKAPAGVKINDPVRMYLKEIGRV SLLTADEEVALALRIEKGDERAKQELAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLM KAVEKFDYQKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQD LGREPMPEEIGAEMDMPSDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPAD HAAYELLKEQLEGVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAK ALRKLRHPSRSKQLKDFLD >gi|269838495|gb|ACXB01000016.1| GENE 39 38535 - 40391 1442 618 aa, chain - ## HITS:1 COG:lin1492 KEGG:ns NR:ns ## COG: lin1492 COG0358 # Protein_GI_number: 16800560 # Func_class: L Replication, recombination and repair # Function: DNA primase (bacterial type) # Organism: Listeria innocua # 5 612 4 619 626 423 38.0 1e-118 MAGMIPEEVIDNVRSAVNIVDVVSRYVQLRKAGKNLFGICPFHDEKTPSFSVSEDKQIFH CFSCGRGGNVFKFLMDLEKISFPEAVRRVAEFGNVPLDDKYVKKSPKSAYSATQSEMIGL YEKAAELYHHVLVNTQLGEKALAYLKKRGITEADMQDFDLGFAPADQDLLLSFLKEQQID QKQMQDSGLFIETADGSLKDRFFNRIMFPIKDNNGKIVAFSGRSLVKDDQHPKYLNSPET SIFNKGKVLYNFSQARPEIVQKKTVILYEGFMDVIAAHRAQVANGIATMGTSLTEDHVRA LKRVASRVVICFDGDEPGQRAIAKAIALIKQTSDLQISVIFIPDNRDPDEYVRDKGVESF QKLMNQTGESSTAFLLKFDRMGLNLANENDQLEYLKKALQRIGELNDALEQDLYLNQLAE EFSIDKRDLKNQLRESVADRIAHTPRQFDPGPAPAPPPTFENQVEKTENTPKKLSSVDIS QYRLLARALNHHDVWLKLQSLPDFYFPNEQLETIYMLAGGYLAKNQEYDAADFMDYLKEP ELQSVVANIESINLSPDYTEEEIEDYISLIKDVAPLSEQISKVKSDLNEATRLGNQELQQ QLTLKLISLYQKQQQLQN >gi|269838495|gb|ACXB01000016.1| GENE 40 40263 - 40505 65 80 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKWANAKQIFSSFSQLNVSTNYINNVHGGPDVVDNFFWNHTSHSITHFRKIDSYDSILQH SLLISNQNAPIINTFVKYVK >gi|269838495|gb|ACXB01000016.1| GENE 41 40506 - 40682 75 58 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLKYWDYLIYRLSYLSPPKISQKILKTSEDTGSPANLFTPPKNLLAVITFQSLSTDFK >gi|269838495|gb|ACXB01000016.1| GENE 42 40735 - 42807 1886 690 aa, chain - ## HITS:1 COG:SP1474 KEGG:ns NR:ns ## COG: SP1474 COG0751 # Protein_GI_number: 15901324 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glycyl-tRNA synthetase, beta subunit # Organism: Streptococcus pneumoniae TIGR4 # 15 690 15 678 678 634 50.0 0 MAHSYLLEIGLEEIPAHVVTPSIQQLAQKVAKFLKENRLSYDSIEQFSTPRRLAIRINGL GDRQPDIEEDAKGPARKIAQDADGNWTKAAIGFTKGQGLTVDDITFKTIKGTEYVYVHKL IQGKTTQEILPGIKDVVESLNFPTMMKWANYDFKFVRPIRWLVSILDDEVLPFQILDIKA GRQSQGHRFLGKAVDLANPSEYEEKLQAEFVIVDAEKRKALIREQIQAIAQEENWEVTPN ADLLEEVNNLVEWPTAFSGKFDPKYLAIPEEVLITSMRDHQRFFFVRNQDGKLLPNFISV RNGNKEHLENVIRGNEKVLTARLEDAAFFYDEDQKNSIDYYVDRLKKVSFHDKIGTMAEK MTRVGSIAQVIAKMLGLDAETAEDLQRAAAIYKFDLVTGMVGEFPELQGVMGEKYALLKG EKSAVAQAIREHYMPNSAEGELPESTVGAVLALADKFDNIFSFFSAGMIPSGSNDPYALR RHAYGIVRILAQRDWSLDLNKFEEAVKQALADDQTSFGVDVDKNFAEVVEFFNDRIKQYL DHQSVSYDIEDAVLAGSQHNVTTIIAAAEVLTNAKAADSFKDEIEALTRVQRIATKNTTA GDLAVDPQLFNNETEGKLFDLITKIEAMNDSDMAAFFKELTSLTPAITEYFDATMVMDKD AKIKANRLNMMSRLANLVLRVGDLTKVMVK >gi|269838495|gb|ACXB01000016.1| GENE 43 42807 - 43706 927 299 aa, chain - ## HITS:1 COG:SPy1689 KEGG:ns NR:ns ## COG: SPy1689 COG0752 # Protein_GI_number: 15675549 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glycyl-tRNA synthetase, alpha subunit # Organism: Streptococcus pyogenes M1 GAS # 1 291 1 291 305 504 81.0 1e-142 MNKKLSVQEIILTLQKYWADQGCMLMEAYDTEKGAGTMSPYTFLRAIGPEPWNAAYVEPS RRPADGRYGENPNRLYQHHQFQVVMKPSPENIQELYLGSLKALGIDPLEHDIRFVEDNWE NPSMGCAGVGWEVWLDGMEVTQFTYFQQVGGLEVHPVTSEVTYGLERLSSYIQDVESVFD LEWGNGVSYGDIFKEPEYEHSKYSFEESNQAMLETMFNDFEAEANRLIEKGLVHPAYDYI LKCSHTFNLLDARGTVSVTERAGFLSRIRNMARKVARAFVEEREKLGFPLLKNDDKEVK >gi|269838495|gb|ACXB01000016.1| GENE 44 43992 - 44753 509 253 aa, chain - ## HITS:1 COG:SP0036 KEGG:ns NR:ns ## COG: SP0036 COG1381 # Protein_GI_number: 15899982 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecF pathway) # Organism: Streptococcus pneumoniae TIGR4 # 11 253 9 249 256 172 37.0 6e-43 MSQLVNADFTGMVMFAKNHRENDLLVKFLTREYGKRMFFIKNAKKKDFKLRSAILPFTHG RYSGLIRSNGLSYINAALDVKQFENIFQDIELNAYATFLLNLVDAAFDDNFKIEAWFDRL ARALTLIDAGNDAEVITDLIQIQLLNSFGIAIVWDHCVVCGRRDLALDYSESRGGMLCQN HWHLDEHRWHLSVKAAKTMAMLSLVSIFKLGQISVSPATKREIWQLTERIYQDQVGINLK SRHFIDQMQNWAH >gi|269838495|gb|ACXB01000016.1| GENE 45 44756 - 45670 894 304 aa, chain - ## HITS:1 COG:BS_bex KEGG:ns NR:ns ## COG: BS_bex COG1159 # Protein_GI_number: 16079583 # Func_class: R General function prediction only # Function: GTPase # Organism: Bacillus subtilis # 6 304 4 301 301 391 61.0 1e-108 MEENKQAFHSGFVAIVGRPNVGKSTFLNYVVGQKVAIMSDVPQTTRNKIQGIYTTDREQI VFIDTPGIHKAHNKLGDFMVQSAISSLNEVDAVMFMVNADQKRGAGDNYIIERLKKIKNR PIYLVINKIDLVHPDELLPIVDSYRDALDWTEVFPISALQGNNINELLATLSKQMPEGPQ YYPSDQVTDHPERFVVSELIREKVLQLTRQEVPHSVAVVIESMKPGKDDLVDISATIIVD RPTQKGIIIGKGGRMLKEIGSRARVDIEHLLGSRVYLELWVKVSEGWRDKQGILQSFGYK KDEY >gi|269838495|gb|ACXB01000016.1| GENE 46 45695 - 46078 386 127 aa, chain - ## HITS:1 COG:L95012 KEGG:ns NR:ns ## COG: L95012 COG0818 # Protein_GI_number: 15673069 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Diacylglycerol kinase # Organism: Lactococcus lactis # 3 127 23 151 151 85 37.0 3e-17 MVLKDKRQTEKNRSLIQSIAHAMYGVKDIFLRERNFRYHCLIAVLVVGCGLAIHLSLMEW IAIVVCIGAMFVAEAFNSAIERLADFACNGKYQFLVKQAKDAASAAVLLTAVFTVLIGLL VFAHHFF >gi|269838495|gb|ACXB01000016.1| GENE 47 46062 - 46532 701 156 aa, chain - ## HITS:1 COG:lin1502 KEGG:ns NR:ns ## COG: lin1502 COG0319 # Protein_GI_number: 16800570 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase # Organism: Listeria innocua # 1 156 4 161 161 137 49.0 9e-33 MDIQIFDHTEEVPQQHLDLIANILDFAGNYLKLDVATEISVTLMHNDEIQKINREYRNVD RPTDVISFAINDEDEDIIMDPEMAEEIPDNIGDLMISVDKVAEQAEFLGHSYERELGFLC VHGFLHLNGYDHMKKEDQEKMFPLQKEIMSAYGLER >gi|269838495|gb|ACXB01000016.1| GENE 48 46537 - 47505 1018 322 aa, chain - ## HITS:1 COG:lin1504 KEGG:ns NR:ns ## COG: lin1504 COG1702 # Protein_GI_number: 16800572 # Func_class: T Signal transduction mechanisms # Function: Phosphate starvation-inducible protein PhoH, predicted ATPase # Organism: Listeria innocua # 6 319 5 318 319 379 60.0 1e-105 MSEELFEKNLILSDPNLEMSLLGNQERFVPIIEEGMNVKVLPFGERITVRGAQTDVEQTI AILKTLVQVLKTGVQLSSTDFVSAMKMAEKGTLNYLPELYSTVLIKDAKGKPVRIKNFGQ RQYVESVKNNDVTFGIGPAGTGKTYLAVVMAVAALKRGDVERIILTRPAVEAGESLGFLP GDLKEKVDPYLRPVYDALYQIIGAEHTTRLLDRGVIEIAPLAYMRGRTLDNAFVILDEAQ NTTNQQMKMFLTRLGFGSKMIVNGDVTQIDLPRGTRSGLKEAQIVLSNVNKVAFVNFTAN DVIRHPVVAKIVKAYDEKEAKG >gi|269838495|gb|ACXB01000016.1| GENE 49 47517 - 47960 402 147 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42519249|ref|NP_965179.1| 30S ribosomal protein S21 [Lactobacillus johnsonii NCC 533] # 1 146 1 146 147 159 52 4e-38 MDFTKQINDDLKTAMKAHDKLSLSVIRMIKSELLNEQGRVGHELTEDDFATVINRAYKQR KDSIAEFKKGNRDDLVKETEAELKVVEKYMPKQLSDDELQEIINQVIEETGATSKADFGK VMSTLMPKVKGKADGAKVNEIVKNTLG >gi|269838495|gb|ACXB01000016.1| GENE 50 48019 - 48204 299 61 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116492871|ref|YP_804606.1| 30S ribosomal protein S21 [Pediococcus pentosaceus ATCC 25745] # 1 61 1 61 61 119 98 3e-26 MSKTVVRKNESLDDALRRFKRTVSKSGTLQEYRKREFYEKPSVKRKLKSEAARKRKNKKR F >gi|269838495|gb|ACXB01000016.1| GENE 51 48404 - 49213 748 269 aa, chain + ## HITS:1 COG:BS_yqfL KEGG:ns NR:ns ## COG: BS_yqfL COG1806 # Protein_GI_number: 16079578 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 10 264 6 262 270 224 43.0 9e-59 MTENKQITNVFIISDSVGDTGDQVARAAAAQFLDAHLRFSRYPFTQTISLLDSILKKAER EKAMIFSTFVDPKLNQRTKTFCQEKNLKYFDVLTPAIQLFAEETGLTSSNTPGRRHSLNE NYFDKISAMEFAVTYDDGKDPAGFLKADIVLLGVSRTSKTPLSLYLANKGYKVANLPLVP KTQIPEEIWQVDRDKIFGLTTTKEVLNGIRRQRMISYGLNPDSSYADMDSINKELQFADD LFKKIGCLVINTANKSIEETATIIMESLA >gi|269838495|gb|ACXB01000016.1| GENE 52 49236 - 49613 291 125 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKKTLVFLGFAVVLIGSITLGWHLTHRPSSATKQDYAQVYNAHQSKIATITNHQKISYLS NLLGDLGSARRVHPKKPQNGQLLRHFKIVQINPSAKIDAFIYRNHTITVKNLPVVHSGTW HLSSQ >gi|269838495|gb|ACXB01000016.1| GENE 53 49858 - 50748 788 296 aa, chain - ## HITS:1 COG:lin1487 KEGG:ns NR:ns ## COG: lin1487 COG0648 # Protein_GI_number: 16800555 # Func_class: L Replication, recombination and repair # Function: Endonuclease IV # Organism: Listeria innocua # 3 293 4 294 297 378 62.0 1e-105 MIIGSHVSMSGKKMFLGSVETSIANGANALMIYTGAPQNTRRKPITELKIEEGQALFKQH NFQATVIHAPYIVNLGNTLKPANFKFAVNFLREEVQRADALGASQLVLHPGAHVGAGADA AISSIIEGLNQIITPEQQVQIALETMAGKGTEVATNFEQIRQIIDGVTHNDKLSVCFDTC HTNDAGYDVKNHFDDVLAEFDQVIGLDRIGVIHLNDSKNGLGSHKDRHANLGFGTIGFEA LYRIAHDERLANIPKILETPQVKDADGKKHAPYRLEIQMLKSGDFDPDLLTKVLQE >gi|269838495|gb|ACXB01000016.1| GENE 54 50751 - 51956 886 401 aa, chain - ## HITS:1 COG:lin1074 KEGG:ns NR:ns ## COG: lin1074 COG1887 # Protein_GI_number: 16800143 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC # Organism: Listeria innocua # 26 396 18 380 384 320 44.0 4e-87 MRKLKQVLKIIIRYGLILVNDALIQLPVHKGRVLFESFNGKGLTDNPKAIYDELLKEFPE NRSQLVWGVKGEFYQAMTTRFPEAKIVKRWSLTWIWTSATAEYWIFNSRMPTWWKKNRRT TYVQTWHGTPLKHLALDMDQVKFPGNSRERYLAEFVKEADRWNYLVAANQYSADIFERAF SFHHQFLKTGYPRNDVLFQKNNVAAIAKLKQKIIGKPDCRVVTYAPTWREDDFIKVGHYH FRWHFDLGEMLRVLPDDVVLLIRPHYLVTDRIDISGYEDRVVVDSTNDMNEIYLVTDLLI TDYSSVMFDFANLRRPMLFFAYDLDYYRDDLRGFYFDYYHELPGPIATTATDLLREVHQL AQNDFAILDQSRFNQFAKRFVQWEQGDAAQQIIKKIHYGRD >gi|269838495|gb|ACXB01000016.1| GENE 55 51949 - 53106 628 385 aa, chain - ## HITS:1 COG:lin1075 KEGG:ns NR:ns ## COG: lin1075 COG1887 # Protein_GI_number: 16800144 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC # Organism: Listeria innocua # 4 375 8 374 383 186 31.0 8e-47 MKKLYLLLVRLVDWFLRRRPTHFKIAYFMSFTGNAKFIKQLTSHFGTDAVLLVYEPAVKA EVQRLKSAGVVRHTLEFRKFQITSFVRGIRAARVALFDNYYPELSAIAKLKEQFFIQIWH ANGAIKAFGWEDPSTYHRSVADQRRFQQVYNSFDEIVVGSAKMAEVFEQSWKVSSAKLAQ IGYPRSDQYFNEAWVQKARAKVFRDYPQFKKQRVLLYAPTYRKDVTFELPKDWSHLLVPE DAVLVVRLHPHLSELEQQLVANSPDRVVLVDHHVTTQELLCVADTLITDYSSIAFDFSLL NNANAVIFFTYDLAQFEQTVGIQASFKQMFFDELVENVAELNVALQSRHSSKNSLQKINQ QWNELNDGHAGTRLIQQIEGILTNA >gi|269838495|gb|ACXB01000016.1| GENE 56 53119 - 53997 874 292 aa, chain - ## HITS:1 COG:SP2113 KEGG:ns NR:ns ## COG: SP2113 COG1284 # Protein_GI_number: 15901928 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 9 289 30 310 313 256 43.0 5e-68 MGHQINKIVKRHQYVARISTAFIYAVLVSIAMNLFWTPGHIYASGVTGAAQVAATVLKRF FSMDVSVAILLFALNVPLFVLAWKAISPRFTIFTIISVGLASIMIKWIHPVTLTTDPIIC ALFGGAVNGYGTGLALKSGISTGGLDILGITILRKTGHSIGSINIAFNILIVTAAGFLYG WPYAFYSAIGLIVNAKVMDMTYTRQQKMQVMIITDRPKSVIDSIQNNMRRGITIIHGAEG AYNHKEKTVLFTIVSRYEMPELEAAMEVSDPHAFVSITDTIKILGHFYEPTL >gi|269838495|gb|ACXB01000016.1| GENE 57 54279 - 56060 1576 593 aa, chain - ## HITS:1 COG:lin1554 KEGG:ns NR:ns ## COG: lin1554 COG0173 # Protein_GI_number: 16800622 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Aspartyl-tRNA synthetase # Organism: Listeria innocua # 2 585 3 584 591 712 60.0 0 MKRTTYAGLVDQQYLDQTVTLKGWVQKRRNLGQLIFIDLRDREGIVQLVFSNEFSADALA VADQLRSEYVIEVTGVVKQRKPKDVNPKMKTGEIEVEVHEAKILNKAKTPPFDIEDGVNA SDELKMKYRYLDLRRPEMLKGLKIRNRITQAVHSYLDEQGFLDIETPDLTKSTPEGARDY LVPSRVYPGHFYALPQSPQLFKQLLMGAGIDRYYQLARCFRDEDLRGDRQPEFTQIDLET SFLTAEEIQDITEGLIARVMKDTLDIDVKLPFDRISWQESMDRFGTDQPDVRFGMELKDI SEIVADSEFKVFSGAVANGGVVKAIAVPDGAAKLSRKEIDKLAKYVERFGAKGLAWLKIT DQGFSGPVAKFFDEATEKQIMAKTDAKVGDLLLFAADRKKVVADTLGYLRVELAKRFDLI DEDQFAFLWVVDWPLFEYDEGDERWVAAHHPFTMPNEEDLHYLDEGEDPHKAHAQSYDII LNGLELGGGSIRINTREVQEKMLKALGFTLEKANDQFGYLLTALDYGFPPHGGLAIGLDR FARLLAKRDNIRDVIAFPKNSKASEPMTEAPTPVSEEQLAELSLDVDIRKPEK >gi|269838495|gb|ACXB01000016.1| GENE 58 56076 - 57350 1354 424 aa, chain - ## HITS:1 COG:SP2121 KEGG:ns NR:ns ## COG: SP2121 COG0124 # Protein_GI_number: 15901936 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Histidyl-tRNA synthetase # Organism: Streptococcus pneumoniae TIGR4 # 1 416 1 413 429 477 57.0 1e-134 MKYQKPKGTADILPPYSKEWQFVEQKARETFALYNYEEIRTPMFEKFEVFSRSAGDTSDI VTKEMYDFDDKGGRHIALRPEGTAGVVRAFVENKLYGPEHQKPVKVYYMGPMFRYERPQS GRLREFHQIGVEAFGSDSPKIDVDTITMAMDFLSQLKVAGLKLVINTLGDQASRQQYRQA LIDYLEPHYDELSDDSKERLHKNPLRVLDSKDATDQEIVKDAPSILDYLTEDAQKHFAQV KEQLDALEIPYVVDSSMVRGLDYYNHTIFEIMVADSALGKGDVTICAGGRYNGLVQELGG PEVSGVGFGLGVERLLLLLNEQTQAALQASRLDFYVVGIGEAVQTETLKIVHELRKMNFV TEQDYLERKPKAQFKSADKLNARYVITVGEAEMQAHVFKLKEMATGTEKTLSLDELKDIK NDLK >gi|269838495|gb|ACXB01000016.1| GENE 59 57746 - 58633 845 295 aa, chain + ## HITS:1 COG:lin1556_2 KEGG:ns NR:ns ## COG: lin1556_2 COG0860 # Protein_GI_number: 16800624 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: N-acetylmuramoyl-L-alanine amidase # Organism: Listeria innocua # 51 294 1 248 249 176 38.0 4e-44 MLSERNMNKEIIFNFIKRNTLQIIISAGFLIAAILVIVPLFSAESVYVGLDQVAIRNSPN RTAKKVGSLDQYQKVTVVSKSNDWYRIRFDDTKTGWIPSWITNRTFKKGQKETPLAESKI VLDPGHGGVDSGALAINQKHQEKKYTLRTSQTIQQTLKNAGAKVIMTRDDDAFVELAKRP QIANQVKADAFISIHYDSADVNNSGTGDTTYYYHDNGSIQLAEAVNHQLIKSVPLYNRGV KFANYQVLRDNRRPAILIEGGYINTRDDFKLISSASYPQKVATAVRKGLENYLAK >gi|269838495|gb|ACXB01000016.1| GENE 60 58618 - 59241 660 207 aa, chain - ## HITS:1 COG:SP0805 KEGG:ns NR:ns ## COG: SP0805 COG0546 # Protein_GI_number: 15900698 # Func_class: R General function prediction only # Function: Predicted phosphatases # Organism: Streptococcus pneumoniae TIGR4 # 2 179 8 178 190 104 35.0 1e-22 MDIFYDFDGTLFNTYPVMVAAFVDAAQQAGVTVNPQLVYEQMRQHSLGFAIKTTAKANGL DANQFKRVFREIETPRLIEAQPFFDVKELLAQITAQGGHNFLLTHRNQAAIDLLQKYGLR DYFTDFVTGDQDFPRKPNPASLNYLITKHHVNQKAAYMIGDRNLDIDAAHHAAIKGILFD PDQLIDVTSAPEFTTTNFAAIRDYLAK >gi|269838495|gb|ACXB01000016.1| GENE 61 59332 - 59781 419 149 aa, chain - ## HITS:1 COG:SP1644 KEGG:ns NR:ns ## COG: SP1644 COG1490 # Protein_GI_number: 15901480 # Func_class: J Translation, ribosomal structure and biogenesis # Function: D-Tyr-tRNAtyr deacylase # Organism: Streptococcus pneumoniae TIGR4 # 1 148 1 147 147 178 60.0 3e-45 MRVVVQRVSRAQVTIAERSVGKINRGLMLLVAFNDQDTAADLDYAVRKITNLRIFENEEG KMDWSINEVGGAILSVSQFTLFASTKKGNRPSFTKSGNPETASQLYDEFNQRLAQTGIPV QTGEFGADMQVELVNDGPVTILLDTQNKE >gi|269838495|gb|ACXB01000016.1| GENE 62 59791 - 62022 1808 743 aa, chain - ## HITS:1 COG:lin1558 KEGG:ns NR:ns ## COG: lin1558 COG0317 # Protein_GI_number: 16800626 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Guanosine polyphosphate pyrophosphohydrolases/synthetases # Organism: Listeria innocua # 1 740 1 735 738 917 59.0 0 MSKEPVLSANDVMNMCREYMNEEHTAFVQKACDFASYVHKEQYRQSGEPYIMHPIQVAGI LANLKMDPETVASGFLHDTVEDTLITLGDVEELFGHDVAVIVDGVSKISKIKYKSNQEQL AENHRKLLLAMSQDIRVIIVKLADRLHNMRTLRHLRPDKQRRISNETLEIYAPLAERLGI STIKWELEDIALRYLNPQQYYRIVHLMNSRRAQREEYINSAIGELEDAIADLHLKHVDIY GRPKHIYSIYRKMVDQHKQFSQIYDLLAVRVITDTVRDCYAVLGAIHAKWKPIPGRFKDY IAMPKANMYQSLHTTVVGPEGRPLEFQIRTEAMHRVAEYGVAAHWAYKEGITDEVNQNAT DAKLNWFKEIVELQDESNDAADFMEGVKGDLFGDRVYVFTPKGDVFELPKGAGPLDLAYT IHTEVGNHATGAKVNGKIVPLDYTIKNGDIVEILTSKNSAGPSRDWLTMVSTRRSRNKIK QFFRQANHEENVEKGREILTKQLEQTGYDPSELLEDENLAQVAKQLNFNQVDDLLAAVGF GDLAPVGIANRLTKDIREQAEADHQKEIQRQMLENHQAISTDDHRPKSKTKASSEGVVIE GADNLLVRLSHCCTPVPGDPIVGYITKGRGVSVHRKDCPNVKSAEEQGERIIEVSWEDPD DTSGNYSADLEVQGYNRNGLLNDVLKSVNNATRNLSSINGKINHNRIVVISLSMGVHNLA HLERVMESLKNVKDVYVVKRPTH >gi|269838495|gb|ACXB01000016.1| GENE 63 62130 - 62459 273 109 aa, chain - ## HITS:1 COG:no KEGG:PEPE_1121 NR:ns ## KEGG: PEPE_1121 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 108 1 108 109 131 82.0 7e-30 MKKIANLEISAHWRYVLFAFLIGIVLPIVLKLCHTPSVMIVLWLLIVFNSLASYTFGNLI KSNGLHFMFLFLFPVLYLIGAIIILPHYANYFAIVYFCIEILSYNLSNS >gi|269838495|gb|ACXB01000016.1| GENE 64 62474 - 63211 741 245 aa, chain - ## HITS:1 COG:SA1406 KEGG:ns NR:ns ## COG: SA1406 COG1385 # Protein_GI_number: 15927157 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 244 1 248 250 193 43.0 2e-49 MQRYFINEALALQDEFTLSKADSHHLLKVMRAQIGEKIEVVGSDQKVWLSQLLDNAVPAS LKAVQEITKSVELPVEVTIACGISKGDKNEQIIKRGTEMGASHFQFFTARYSVARWNEKK IDRKLQRFEEIAKAAAEQSHRQMIPTVEIISFADLVNSPVQHRMVAYEESAKEGEFANFK RVLSNTASGDALLAVFGPEGGLAPEEIKSFNDANFTLAGLGPRILRAESAPMYVLSAISY QFELQ >gi|269838495|gb|ACXB01000016.1| GENE 65 63221 - 64168 1275 315 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116492885|ref|YP_804620.1| 50S ribosomal protein L11P methyltransferase [Pediococcus pentosaceus ATCC 25745] # 1 315 1 316 316 495 77 1e-139 MKWTEVNVKTTNEAVEAVSSIFDGLDAVGVKIEDALDFKNYQASYPSELYELKDIPHITE GAIVSAYYPESTDVSKLVGQLKAKLNELPSFGLDVGPASVTTVEVQDDDWATAWKKYYHP VRITRYLTVKPSWSDYQASQPDEKVISLDPGRAFGTGTHPTTRLCLQAMEMIMRGNETVY DVGTGSGVLSIAAKLLGAAKVEAFDVDDDAIAAAQENFDLNPIAKSIAARPNDILEGIKQ PVDLIVANILSDVLVPMIPQAKPLLNKNGWLVMSGIIDDKLPLIQKTLAANDFKVNQVLT YGEWRGVIASHQLEE >gi|269838495|gb|ACXB01000016.1| GENE 66 64494 - 65792 1045 432 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 16 431 5 425 447 407 48 1e-112 MSKQKQGQYRNPEAILDINECPTFPHLVGLSIQHMFAMFGSTVLVPILVGLNPGIALFSS GVGTLLYILITKAKIPAYMGSSFTFIVPMMALMKTTGYEGIAQGTISVGVVYLIVALIIS QLGSDWLDRILPPVVVGPIIMVIGLSLAGTAAKDATMRTVGSQSVYDLKYFAIALITLLI TIVFNMYLKGFVSLIPILLGLITGYIVALFLGVVDLSGVTHAHWLIAPSFEIPFVSYHLH LSWGAILSMMPLAFVTMTEHTGHIMVLNTLTHRNFFKEPGLHRTLSGDGVASIVAGFIGG PPVTSYGENIGVLAVTKVHSVYVLMGAAVSAIIFSFIGKLSALIESIPSPVIGGISFLLF GTIAANGLRILIDEHVDFNQKRNLMIAASILVIGIGNASLNLGDLSFSGLAVATVLGIIL NLVLPQKALSER Prediction of potential genes in microbial genomes Time: Fri May 27 06:56:34 2011 Seq name: gi|269838494|gb|ACXB01000017.1| Pediococcus acidilactici 7_4 cont1.17, whole genome shotgun sequence Length of sequence - 14282 bp Number of predicted genes - 16, with homology - 13 Number of transcription units - 11, operones - 4 average op.length - 2.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 180 - 410 297 ## PEPE_1125 hypothetical protein - Prom 528 - 587 6.9 - Term 524 - 568 0.5 2 2 Op 1 . - CDS 766 - 966 59 ## 3 2 Op 2 . - CDS 863 - 1231 318 ## 4 2 Op 3 . - CDS 1228 - 1428 308 ## COG1476 Predicted transcriptional regulators - Prom 1461 - 1520 12.8 + Prom 1709 - 1768 5.2 5 3 Tu 1 . + CDS 1965 - 3149 1135 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase + Term 3215 - 3268 3.8 - Term 3270 - 3318 10.0 6 4 Op 1 . - CDS 3380 - 4375 863 ## COG1088 dTDP-D-glucose 4,6-dehydratase 7 4 Op 2 . - CDS 4398 - 5981 1033 ## COG0025 NhaP-type Na+/H+ and K+/H+ antiporters - Prom 6021 - 6080 7.7 - Term 6100 - 6141 5.5 8 5 Op 1 . - CDS 6156 - 6614 440 ## LSEI_2220 flavodoxin - Prom 6648 - 6707 1.6 9 5 Op 2 . - CDS 6716 - 7165 401 ## COG2153 Predicted acyltransferase - Prom 7198 - 7257 7.8 - Term 7348 - 7386 3.2 10 6 Tu 1 . - CDS 7393 - 8130 633 ## COG0778 Nitroreductase - Prom 8175 - 8234 9.5 - Term 8222 - 8279 14.9 11 7 Tu 1 . - CDS 8342 - 8719 525 ## COG3729 General stress protein - Prom 8781 - 8840 6.7 + Prom 9097 - 9156 13.7 12 8 Op 1 . + CDS 9312 - 9821 604 ## PEPE_0658 hypothetical protein 13 8 Op 2 . + CDS 9944 - 10210 235 ## LJ1415 hypothetical protein + Term 10235 - 10292 10.1 + Prom 10590 - 10649 5.0 14 9 Tu 1 . + CDS 10670 - 11092 195 ## + Term 11239 - 11286 5.6 - Term 11519 - 11566 3.3 15 10 Tu 1 . - CDS 11775 - 12413 517 ## COG3338 Carbonic anhydrase - Prom 12453 - 12512 4.1 - Term 12529 - 12569 7.4 16 11 Tu 1 . - CDS 12817 - 13926 1045 ## COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases - Prom 13949 - 14008 6.4 Predicted protein(s) >gi|269838494|gb|ACXB01000017.1| GENE 1 180 - 410 297 76 aa, chain - ## HITS:1 COG:no KEGG:PEPE_1125 NR:ns ## KEGG: PEPE_1125 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 76 1 76 87 117 80.0 1e-25 MMTPESVYVFKFGKEELNNRVIIKYTHTWTGRIKINEIDLRLHGQQSPRIFHRENELLAY LKKHLTEQDGVKDIKR >gi|269838494|gb|ACXB01000017.1| GENE 2 766 - 966 59 66 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTGLNAYQNYHRYQRFYQGSRIGYFIAATGILFISSLILGLWVMELLKKLDLWNQRRIER RFDKDE >gi|269838494|gb|ACXB01000017.1| GENE 3 863 - 1231 318 122 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRKNVVDERVKRIRNQIAYEALTILLTLLAIAIALQMTIFKMPWSAYVVEAFGLVLAGGY VVVRMLFNGIRIFDGRYEKKFPTIVYAGVDWFKCLSELPPLPAFLPGKSNWLLYCGDRNP FY >gi|269838494|gb|ACXB01000017.1| GENE 4 1228 - 1428 308 66 aa, chain - ## HITS:1 COG:SPy1934 KEGG:ns NR:ns ## COG: SPy1934 COG1476 # Protein_GI_number: 15675737 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 1 63 1 63 68 89 68.0 2e-18 MKNQRLKIARLEKDLSQAELANLIGVTRQTIGLIEAGNYNPTLKLCVAICQALDKTLDDL FWEDPS >gi|269838494|gb|ACXB01000017.1| GENE 5 1965 - 3149 1135 394 aa, chain + ## HITS:1 COG:L56488 KEGG:ns NR:ns ## COG: L56488 COG0436 # Protein_GI_number: 15672039 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Lactococcus lactis # 8 394 3 391 391 397 50.0 1e-110 MSDKVNALLERIKPSVKNTQMAQVFKYNEEISKIPGVIKLTLGEPDFNTPEHVKEAGVQA IRDNKSHYTATAGDPKVRQAAAQYLKQKYGQDYDPENELVITAGVTGGMYATLTSIVSEG DEVLIPTPIFPLYFPIVKTNQGKIVYMNTAENNFLLSPEQLESTLQAHPRAKAIILNFPS NPTGMTYTKEQLAALADILRKYDIFVISDEIYSDLIFDQKHYSISHLLPDQTIVLNGLSK SHAMTGWRVGIIAGPAPLVEQIEKIHELSVTSITTVAQYAALEAFQEGLNDSEPMRVEYK KRRDYLHDALVKLGIECSKPQGTFYLMAKIPGDLEQDDFKFSMQLAKEAKVAVIPGSSFG PGGEGYVRFSYAASMDDLTNAIARIEKFLKAKRA >gi|269838494|gb|ACXB01000017.1| GENE 6 3380 - 4375 863 331 aa, chain - ## HITS:1 COG:NMB0063 KEGG:ns NR:ns ## COG: NMB0063 COG1088 # Protein_GI_number: 15676000 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-D-glucose 4,6-dehydratase # Organism: Neisseria meningitidis MC58 # 2 323 3 332 355 324 49.0 2e-88 MRILVTGGAGFIGANFMNMWVPRRPKFEFLNLDKLTYAANLDNLTVSQESNYHFCRGDIA DRSQVRQIFQNFRPEVVINFAAESHVDQSIADPAKFITTNVNGTFNLIEEFKELWAEDYT HKRFHQVSTDEVYGFLGATGSFTEASPYQPSSPYSASKASADLLVQSYGRTFGVPISITN ASNNFGPYQHPEKLIPKVIFNALRGEPIPLYGTGENVRDWLYVSDHCEAIWQVVFQAKPG AHFNVGADHPLSNQQLVGELLAILAEMTGKPVEQYTQLVQHVKDRPGHDFRYAIDASLLE QQLGWQPQTEFPAGLRATVDFYLQQYQKGKL >gi|269838494|gb|ACXB01000017.1| GENE 7 4398 - 5981 1033 527 aa, chain - ## HITS:1 COG:SA2228 KEGG:ns NR:ns ## COG: SA2228 COG0025 # Protein_GI_number: 15928018 # Func_class: P Inorganic ion transport and metabolism # Function: NhaP-type Na+/H+ and K+/H+ antiporters # Organism: Staphylococcus aureus N315 # 4 406 3 433 692 160 27.0 4e-39 MNILISTFMILVVVGVSNVLARYIPKVSGNYVNLLAGILTGILPVTNQLIAPFNGEIFMV LILAPLLFFEGQLTPLLRIKKKLGSILGTAVLLATVTMIILTWLLHVTLSIAAPLALAIA AIITPTDATAFDSVIEGRKIRRVIRDTLKTESLFNDATGIVLLQAAMLWLQKGQLVIGQN LLDFFKMMIGGVLVGSITAIILMTIREYFMRSSNNVRSSQTLIYLLSPFAIYFFAERLGM SGVIAVIVSGLIHNGEVNRSRFSDPRQVHFGLQIVTFANRILNSFVFVVLGIVLVRILQD NYSMMTKSFEWLMVGILVYVILLVCRYCYGRLFVGDQQRQTALLFALGGVHGTVTLAMTF SISEMLTPATFNFVVMVETVAIILSMAVPTVIFKILLPQDFDEQIRQQQLAFLREGMVKA GIKKLKSIDLEEAVRDNAMYDIRDQIQANTLGDFFKKWREINTEKRVLTNLQSVARRRAL MYAFDAERAYLYDLAKRHVVNSDVVYEIYSEILLSESLVLDPQNQMV >gi|269838494|gb|ACXB01000017.1| GENE 8 6156 - 6614 440 152 aa, chain - ## HITS:1 COG:no KEGG:LSEI_2220 NR:ns ## KEGG: LSEI_2220 # Name: not_defined # Def: flavodoxin # Organism: L.casei # Pathway: not_defined # 1 145 1 144 153 122 46.0 4e-27 MAKKVLIATYSRTGTTAKVAKALYELLPDADRFTIEVAPGIFSEEMTEVSEQATKQMETG NFPPLSKTIPNVILYDLILVGSPVWNGAPATPIHSFLTDLQGYQGVVAPFYTFGGDPGIF EKTFKEWAGDLQVKAGHGGEKDLAAWVDELVK >gi|269838494|gb|ACXB01000017.1| GENE 9 6716 - 7165 401 149 aa, chain - ## HITS:1 COG:ECs3155 KEGG:ns NR:ns ## COG: ECs3155 COG2153 # Protein_GI_number: 15832409 # Func_class: R General function prediction only # Function: Predicted acyltransferase # Organism: Escherichia coli O157:H7 # 13 149 10 149 153 122 43.0 2e-28 MADDLTLSIKTTAEMTATELWEVFQERVKVFVVEQNCPYQEVDEKDQNARHVMIKRNGRL VAYARIVPHDDPNYISFGRVLVVKEFRGQHLAQRLVQATLDEIKRVAGIRPIKIAAQSYL QNFYAQFGFKPVSDVYLEDNIPHLDMVLE >gi|269838494|gb|ACXB01000017.1| GENE 10 7393 - 8130 633 245 aa, chain - ## HITS:1 COG:lin0323 KEGG:ns NR:ns ## COG: lin0323 COG0778 # Protein_GI_number: 16799400 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Listeria innocua # 1 245 1 245 245 258 51.0 8e-69 MEDVIELMKKHTSVRNFADTSLTDEVKEQLIIAAHAGASSNFVQATSIIDVTDPSIRGQL AEISKSAAYVKQSGAFFVFVADLYRQSQILQQQGLDLAGIKNMEALTVAIVDTAIAGENL AVAAESLDLGICYIGGIRNDLTTVRDLLNLPKFTVPLFGITVGKPTRKNAVKPRMPLHNN TFKNGYDRQAAQDLSEYQKITQAYYANRSSHAQETDWIRKMTDFFAEPRREEMASFLLEQ GFTLE >gi|269838494|gb|ACXB01000017.1| GENE 11 8342 - 8719 525 125 aa, chain - ## HITS:1 COG:BS_gsiB KEGG:ns NR:ns ## COG: BS_gsiB COG3729 # Protein_GI_number: 16077507 # Func_class: R General function prediction only # Function: General stress protein # Organism: Bacillus subtilis # 4 124 3 123 123 104 72.0 3e-23 MAKEEEKMTREEAGKKGGEATAKSHDKDFYQDIGKKGGEATADSHDKDFYQDIGEKGGEA TSETHDKDFYQDIGEKGGEATSEAHDEEFYQKNGKKGGEATSKSHGKDFYQEIGKKGGRA NSDDD >gi|269838494|gb|ACXB01000017.1| GENE 12 9312 - 9821 604 169 aa, chain + ## HITS:1 COG:no KEGG:PEPE_0658 NR:ns ## KEGG: PEPE_0658 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 169 1 169 169 102 46.0 7e-21 MNKLLDRFDPFMFVVGILSIFVAVISLRNPLATFSAVVVIAAITAILSGIYKLTVLRNAL ENSGWVVFNAVIDIIIGILMLFNGKFGILFVAISFAIMFLMDSIISLWLSNVIKLVNEKY FMVDVILSVIGIILGVLLLIYPAFSILSIYYLVGLFFMITGIGAIIHSI >gi|269838494|gb|ACXB01000017.1| GENE 13 9944 - 10210 235 88 aa, chain + ## HITS:1 COG:no KEGG:LJ1415 NR:ns ## KEGG: LJ1415 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 4 88 9 93 93 115 60.0 5e-25 MQEETKVIRIIGRMASVLSVLMYVSYIPQIISNMHGDYGNPIQPLVAGINCTVWTIYGYF KSERDWPIIVANVPGIFLGFFTFYTALH >gi|269838494|gb|ACXB01000017.1| GENE 14 10670 - 11092 195 140 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKTKTNIWSAISDIVNIHFLFISESILINTLLTKNNILGQNHGSANDFLEFVSFIFNIPS ISVTKIISFCIFLLVIIGLLLNTKAMFENKESGISIVGPILGIIGNIDCFLGGTLRATSI ITFIVAAVFSSLQRPIRQHN >gi|269838494|gb|ACXB01000017.1| GENE 15 11775 - 12413 517 212 aa, chain - ## HITS:1 COG:VCA0274 KEGG:ns NR:ns ## COG: VCA0274 COG3338 # Protein_GI_number: 15601042 # Func_class: P Inorganic ion transport and metabolism # Function: Carbonic anhydrase # Organism: Vibrio cholerae # 60 207 87 235 239 91 34.0 1e-18 MRKLNYNHQDQWEKEDRMTQSPILIEKAELEGKQNQVISRTKPYVATEVHNNLNNLSLTA NGEIKSDRRRFQLMEVHFHHPAEHRFEGEAEPRVLEAHFVHYGSLEQPLVVSVTFKIGPK NEIFEKILDAMEDGAVTQPLILEELIPQDGNFYRYIGSLTTPPLTEGVEWLVFENALTID LQQLNRYTSVFAAPNNRALQNLNGRSIEKYEL >gi|269838494|gb|ACXB01000017.1| GENE 16 12817 - 13926 1045 369 aa, chain - ## HITS:1 COG:L78730 KEGG:ns NR:ns ## COG: L78730 COG1304 # Protein_GI_number: 15673234 # Func_class: C Energy production and conversion # Function: L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases # Organism: Lactococcus lactis # 7 366 20 383 383 417 61.0 1e-116 MTMINGYEQSDREEKIDILNLESLEKQAEKIIPAGGFGYIAGGSEDEWTLKQNRMAFHHR QIAPKALSGIEKPELNTEIFGIPLNTPVMMAPAAAQGLAHSQGEKDTARGLAAVGGLMAQ STYSSVSIAETAAAGGDAPQFFQLYMSKDWNFNESLLDEAKKANVKAIILTVDATVDGYR EADIKNKFTFPLPMANLIKFSEGNGQGKGIEEIYASAAQNIRPEDVKRIADYTNLPVIVK GIQTPEDAIRAIDAGAAGIYVSNHGGRQLNGGPASFDVLEDIATAVNKQVPIIFDSGVRR GSDVFKALASGADLVALGRPVIYGLALGGAKGVQSVFEHLNHELEIVMQLAGTKTIEDVK NNSLLNIKY Prediction of potential genes in microbial genomes Time: Fri May 27 06:57:12 2011 Seq name: gi|269838493|gb|ACXB01000018.1| Pediococcus acidilactici 7_4 cont1.18, whole genome shotgun sequence Length of sequence - 36278 bp Number of predicted genes - 55, with homology - 43 Number of transcription units - 8, operones - 5 average op.length - 10.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 312 - 364 10.7 1 1 Tu 1 . - CDS 600 - 707 75 ## - Prom 885 - 944 9.4 2 2 Tu 1 . - CDS 1118 - 1360 229 ## PEPE_0982 hypothetical protein - Prom 1400 - 1459 7.5 - Term 1432 - 1467 4.0 3 3 Op 1 . - CDS 1477 - 1839 459 ## JDM1_1004 prophage Lp2 protein 58 4 3 Op 2 . - CDS 1852 - 2115 311 ## PEPE_0984 hypothetical protein 5 3 Op 3 . - CDS 2115 - 3278 861 ## PEPE_0985 lyzozyme M1 (1,4-beta-N-acetylmuramidase) 6 3 Op 4 . - CDS 3290 - 3649 425 ## PEPE_0986 hypothetical protein 7 3 Op 5 . - CDS 3664 - 3912 330 ## PEPE_0987 hypothetical protein 8 3 Op 6 . - CDS 3954 - 4163 293 ## PEPE_0988 hypothetical protein 9 3 Op 7 . - CDS 4156 - 4383 282 ## PEPE_0989 hypothetical protein 10 3 Op 8 . - CDS 4376 - 7504 2638 ## PEPE_0990 hypothetical protein 11 3 Op 9 . - CDS 7510 - 9894 1571 ## PEPE_0991 hypothetical protein 12 3 Op 10 . - CDS 9959 - 11728 1148 ## PEPE_0992 hypothetical protein - Term 11753 - 11787 -0.0 13 3 Op 11 . - CDS 11805 - 15125 2310 ## COG3953 SLT domain proteins 14 3 Op 12 . - CDS 15094 - 16587 1251 ## COG5283 Phage-related tail protein 15 3 Op 13 . - CDS 16615 - 16800 228 ## JDM1_0995 hypothetical protein 16 3 Op 14 . - CDS 16845 - 17219 471 ## PEPE_0995 hypothetical protein 17 3 Op 15 . - CDS 17295 - 17984 698 ## JDM1_0993 hypothetical protein 18 3 Op 16 . - CDS 17998 - 18378 362 ## JDM1_0992 hypothetical protein 19 3 Op 17 . - CDS 18378 - 18785 422 ## JDM1_0991 hypothetical protein 20 3 Op 18 . - CDS 18788 - 19135 238 ## PEPE_0999 hypothetical protein 21 3 Op 19 . - CDS 19125 - 19457 358 ## PEPE_1000 hypothetical protein 22 3 Op 20 . - CDS 19530 - 20762 1175 ## PEPE_1001 phage phi-C31 GP36 major capsid-like protein 23 3 Op 21 3/0.000 - CDS 20762 - 21508 924 ## COG0740 Protease subunit of ATP-dependent Clp proteases 24 3 Op 22 . - CDS 21486 - 22649 962 ## COG4695 Phage-related protein 25 3 Op 23 . - CDS 22652 - 22846 197 ## PEPE_1004 hypothetical protein 26 3 Op 24 1/0.000 - CDS 22836 - 23534 591 ## COG4626 Phage terminase-like protein, large subunit 27 3 Op 25 4/0.000 - CDS 23575 - 24735 729 ## COG4626 Phage terminase-like protein, large subunit 28 3 Op 26 . - CDS 24738 - 25196 421 ## COG3747 Phage terminase, small subunit - Prom 25291 - 25350 4.2 29 4 Op 1 . - CDS 25355 - 25636 344 ## gi|270291375|ref|ZP_06197597.1| predicted protein 30 4 Op 2 . - CDS 25703 - 26209 415 ## COG1403 Restriction endonuclease - Prom 26340 - 26399 4.6 - TRNA 26518 - 26588 54.8 # Trp CCA 0 0 31 5 Op 1 . - CDS 26700 - 27161 295 ## PEPE_0777 hypothetical protein 32 5 Op 2 . - CDS 27243 - 27428 145 ## 33 5 Op 3 . - CDS 27442 - 27600 294 ## 34 5 Op 4 . - CDS 27618 - 27803 108 ## 35 5 Op 5 . - CDS 27821 - 28093 413 ## 36 5 Op 6 . - CDS 28086 - 28274 220 ## 37 5 Op 7 . - CDS 28277 - 28648 386 ## PEPE_1013 hypothetical protein 38 5 Op 8 . - CDS 28648 - 28785 213 ## 39 6 Op 1 . - CDS 29173 - 29805 659 ## gi|270291380|ref|ZP_06197602.1| predicted protein 40 6 Op 2 . - CDS 29783 - 29923 67 ## 41 6 Op 3 . - CDS 29923 - 30738 468 ## COG1484 DNA replication protein 42 6 Op 4 . - CDS 30719 - 31459 545 ## PEPE_1019 hypothetical protein 43 6 Op 5 . - CDS 31489 - 31713 232 ## 44 6 Op 6 . - CDS 31703 - 32380 391 ## PEPE_1020 hypothetical protein 45 6 Op 7 . - CDS 32392 - 32817 407 ## COG0629 Single-stranded DNA-binding protein 46 6 Op 8 . - CDS 32810 - 33016 226 ## 47 6 Op 9 . - CDS 33009 - 33734 684 ## PEPE_1022 hypothetical protein 48 6 Op 10 . - CDS 33735 - 34187 309 ## PEPE_1023 hypothetical protein 49 6 Op 11 . - CDS 34177 - 34284 135 ## - Prom 34353 - 34412 5.8 + Prom 34337 - 34396 9.3 50 7 Tu 1 . + CDS 34416 - 34682 358 ## PEPE_1025 hypothetical protein + Term 34726 - 34770 -0.3 - Term 34549 - 34605 0.5 51 8 Op 1 . - CDS 34639 - 34896 307 ## PEPE_1026 hypothetical protein 52 8 Op 2 . - CDS 34910 - 34993 82 ## 53 8 Op 3 . - CDS 34996 - 35325 356 ## gi|270291387|ref|ZP_06197609.1| predicted protein 54 8 Op 4 . - CDS 35339 - 36061 566 ## COG3646 Uncharacterized phage-encoded protein 55 8 Op 5 . - CDS 36075 - 36278 124 ## PEPE_0749 hypothetical protein Predicted protein(s) >gi|269838493|gb|ACXB01000018.1| GENE 1 600 - 707 75 35 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MYLGVGLPLLGVGLPLLGVGLPLLGVGLPSVGELV >gi|269838493|gb|ACXB01000018.1| GENE 2 1118 - 1360 229 80 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0982 NR:ns ## KEGG: PEPE_0982 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 80 1 80 80 117 85.0 2e-25 MFRNLVKLAGLSRWYHHEKHVDRSNARKTSGQSAFSYDDFKGLRKLAFWLFVFSIFLNWG FVGAVSLIAWLAMWAVSLLF >gi|269838493|gb|ACXB01000018.1| GENE 3 1477 - 1839 459 120 aa, chain - ## HITS:1 COG:no KEGG:JDM1_1004 NR:ns ## KEGG: JDM1_1004 # Name: not_defined # Def: prophage Lp2 protein 58 # Organism: L.plantarum_JDM1 # Pathway: not_defined # 1 106 1 108 155 166 89.0 3e-40 MIKKISFKNADGSLNGKLIAGIISLLIVLIQQIFAMFGVKFTGDWSAIVAVINTVLTILG MLGVITDVQTVTAPTVKSDEESQVEAAANKVADETPTPTSAAVNSSAASDTESASQANQK >gi|269838493|gb|ACXB01000018.1| GENE 4 1852 - 2115 311 87 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0984 NR:ns ## KEGG: PEPE_0984 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 87 1 87 87 122 87.0 4e-27 MSQYDDTTKLLMDIQKDVASTKAKVESIEEKMNRVDDIDSKADKALAKSIEIEHEIGRVT QIQNWVIGVLISGVLVTLVIYIAEKFL >gi|269838493|gb|ACXB01000018.1| GENE 5 2115 - 3278 861 387 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0985 NR:ns ## KEGG: PEPE_0985 # Name: not_defined # Def: lyzozyme M1 (1,4-beta-N-acetylmuramidase) # Organism: P.pentosaceus # Pathway: not_defined # 1 387 1 387 387 601 88.0 1e-170 MNKHKLKALILMVSAIFIAFFMGNVTTHAARMDMVDVSNNNGYMSTAEYVSMRNEFGVKA VTVKISEGGTYKDPYAASNIANVQAAGMYINGYHFARYATKAQAIAEADFAGRTAKAAGL PVGAVLATDVEAEEQNYQSKATNDRNNVAFMKEIQKFGYRADIYTSGSWANTKMTIKNKT GWIAAYPYVVSGKNWYSTNHAWQWSSTAKFRISYGGFDVSQLNSNYYTAGLKSTVKPTNK GAVKANNKKANKNISKPATSAKWVKESKTYTLKTAVNLHTGASTSSNVIAILPAGTTVKT DQAIIQGGYRWVRQPRFNGYGYLATGPASNTLEYVKSGTAHTYYTVKYGDSWWTIAQRNG INMATLASQNGKTIYTTIYPGQRLVVR >gi|269838493|gb|ACXB01000018.1| GENE 6 3290 - 3649 425 119 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0986 NR:ns ## KEGG: PEPE_0986 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 119 1 119 119 167 93.0 1e-40 MAKTLSFTDTSPQTVKIGDTTTSFTLVCGNDNVATDLTNATSITVKLGNASGYLKSATVD PASLTEPTTGQIVLALTADLMAGLTAGDYQLEVWVVDSIGTSIYPSESTLQFQINNSLE >gi|269838493|gb|ACXB01000018.1| GENE 7 3664 - 3912 330 82 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0987 NR:ns ## KEGG: PEPE_0987 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 82 1 82 82 87 89.0 1e-16 MALSTSQSISLSGTSTINGVQVATFSTVVSKGLSYTSVSMQITDQDLYEKNKAEVRKDRN DFQTAADNLSDSLDSGSVTSTE >gi|269838493|gb|ACXB01000018.1| GENE 8 3954 - 4163 293 69 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0988 NR:ns ## KEGG: PEPE_0988 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 65 1 65 67 63 87.0 2e-09 MSKKVRGVIEETKPANNSNEEKVTKLNNKIAQLERTNRVLSQLSNDRNERICQLEIEVAT YKTINSKTV >gi|269838493|gb|ACXB01000018.1| GENE 9 4156 - 4383 282 75 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0989 NR:ns ## KEGG: PEPE_0989 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 75 1 75 75 114 92.0 1e-24 MNDFQITNITISNSDDLGRGTTMRKIGYSGTFSDSSHIEGFVMMSEDKFFTTNYADLKNI VATQIIKNLGGNKNE >gi|269838493|gb|ACXB01000018.1| GENE 10 4376 - 7504 2638 1042 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0990 NR:ns ## KEGG: PEPE_0990 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 590 1042 612 1062 1062 659 82.0 0 MAESNATQVILTDDGLKIIKAQNTADEAVGNINDINSDNKLTPSEKIKLKQEYDKDVELY NIDIGQLKSVNLPTAELDIAMSNLTNFVTPLFKEMNITSTVDRNALNSVFTAFATADKNA SQAFVNMVQQVADDAKKAGDDAKAAGEKAQVAGEEAKTSADQAQADAIQAKADATKAQAD ATTAQNSAQQALDNITVVDSKVDKLSTSTTAQFNTLTDGYQEVISTVNNMDIGGTNLLKN SKFDNKMNNWRIWCPQGMGTSTVKINETGGGDWPRQAIYLAEIVNTEADKNNQFGIAQDN VSVEPNAEYTFQLFNDGADPITVQHGNGSNDPYVTKALGSHRTTWTFKIPAGVYNTNIYI GFDSGQSGTAWISLTKLEKGNKATDWSPAPEDLASQTQITALNNLINQKVSNDQYQSDKT QTADLISQTVTNAVNNINVGVRNYLLATGTPFTKTMDASAGDIYDFNYWYSFGQLNKAPF KKGMEVMWSFDWEVSNMTSYGQIEMYLEGSPFSVNKVIGSVGPQDLHVSPSPTNTSGHVE VYVTLNENFLNSVSKQFKHGVMKPFKGTLTFKNVQLVIGNKAIDWSPAPEDLASKTDITA SINNIHLGVKNADSSTSTFNMNSNTILLDANKIILSGKTSILDGTIDTAKIANAAINTAQ IADGAINNAKIANAAIDDAKISNLNGNKIIAGSITANKINVDDLIANGINTKTLTSVNLN TSTLTTPQLNLGLNGTFTEDFDYTQPTSIFLPKKNKGTLTFNHGVLQSKGNMQTYVGGQW GGMNDNYTFQAGIDNSQWTEVAPGYIKLDLFKQNDTDVAERTYVDPTGFYYTTNSNQAYT SYVGNIVSTPQVQTSSVLTKYIGPSAGQKLLQIDNNGSDYGLQVGSYAGKEAVLSDYIYN FTASTASNVYITANGHLARSTSASKYKYNIKNPDIETTLGDRLLNVHMATWNDKHAVDTY AEQLTTGEAKEKLSIKEHYGLIAEQMRDAGLDMFIDYGKNHEIEGIQYDRAWVPLLSVIR RLNDKVNEYELRLSRLEEKINE >gi|269838493|gb|ACXB01000018.1| GENE 11 7510 - 9894 1571 794 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0991 NR:ns ## KEGG: PEPE_0991 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 788 1 786 796 1107 71.0 0 MALNNQYLILDSNLKRIGTLTVDGATKFSNDSVKIQLADADTTSTSYDDDANIGTQDNFN GTINLNAQSKKFDHQGSLDVLQGQPDSDKVVAGNNLAYYDELSGHWYVMRIYSVEESNTA ATKHVTTANFTNLCLYTLAHHYPVAITASASSIQTAFNQCFNATGWTLDYQTTNVMTPSI TIDGKTKASTLVQTLIQTYNVEIDPYVEIDSQGNVTKKVCVITDQLNANVVYNEAVFGKN ITSLKRTTVSNPITKLIPYGANGNTIALVNDGKPYIVDDEANQKYNPDWQAGLYYEGVIT ANAIENPAGLKVWAEEMLQLYNHPRTYYEVNVTPNFNPPLGATIRFKDELIRPALDASGR VIQRTISFANPYGNTVGFGEYVTVPVATPAWMQGYQSAINSALEKAREDASSVKPVALTP DGNNFTDTTQTKRLILQAWEGNTNISAYIDSKGFIWHRYNTDGTLDTNFNQTGYLVQAAY SSVGTLHGTIETRYIQNEPEIKLQTSAIRNLGSFDPDDSALGITDAAQYMCPLSNGQYLT SRAINQSTTGDVMFVLHDTDFKPISKMIVSHGGHGSSFSIEEVDGTIYIWSATKPNLNVN EYAISRIPYLANMTIGNDDDRITRFCTVDRYIRVSVDFKHGYLLCGYFNGKQDILRLDEV KQGNYNVLYSIDIDNYGFNRDRQTYQSQGIDFPYVYFHSGDFNMKDPRMVYAVNVVHGGQ EFASNYLLDMDLGVNDDVIEPETCNIIYNSQTNQPELLVTFNCRYQGNALERVFVIPIKE RLPMPTISNDEEGR >gi|269838493|gb|ACXB01000018.1| GENE 12 9959 - 11728 1148 589 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0992 NR:ns ## KEGG: PEPE_0992 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 589 1 588 588 833 70.0 0 MTLQRDDFEYAGLNSRDDLQVEMGNVVLPSAPAMAEQVTDIPAMYGNQFNGTDFTSRTIN IPVSIYCADNQARFNQIMHNLSGLLLSDDPNDNGKEYPLVFGFEPKVTYWGHITAISDPA PINPGMYDMTLTITFVQSDPRATLPQVEKPLNNGLNTITVDGTARTEPVIQVIPKRDLKY IGFSLNGGQFGLGPESPGDQATAVQPYTKVVDDPLGTMAMWTNDANAISNMKTGEAYTYQ GHSAIKTETNVMRPGLTSNGYDFGPIPTTGEDRWYGPAYRYTGMTQSLTDWRVRTGIHQF KYSGAHNGRAMGRVEVLLLDPNGNTIGRFGIRDMAYGAKPMARLQICEPGSTLEYGDRYT DLYYGSGPAGSFTNKPDQKIKIKTGTTTRTVTKYGRSRRGKVTKKTIKQTVDTYTTVVNK EEDSALSGAWLMLDITKRGQVFTWSITQYSTRTGRPFLDPHIHMLVHGTYVDTQNKYQTP LGGIGSVFLKHPITEDVHKIAYRNPFMSMTDLEIWKVNKVDATQPTYIAGAGEEIVMDCE TDTVTVNGKLVSPVWSTDFPKLKPGVNSLSMIGDLDDAQITLKYLPRIL >gi|269838493|gb|ACXB01000018.1| GENE 13 11805 - 15125 2310 1106 aa, chain - ## HITS:1 COG:L25762_2 KEGG:ns NR:ns ## COG: L25762_2 COG3953 # Protein_GI_number: 15673370 # Func_class: R General function prediction only # Function: SLT domain proteins # Organism: Lactococcus lactis # 914 1099 1 179 203 148 47.0 7e-35 MEFLKKGALDSVKKSLSDLVGALGKKTGQYVGDVISFLVKNEKPIEKTGGAFASIVGSLA KGAWSAVAGALKLIGGHSKDASKGMNGVADATAAIAKHKGAIETLGKAIMVYLAVSKLKA IGSNLFGIAAAAGDVGKKLSRIVFKPRIEGETGKRELTLFGKAVKGTAKWIGKSLKWTAQ VAWKGASKAVGLLWKATKGTSKLIGRGLSWTAKIAYKGASKAFSVLGAGIKTLGKSFLSL SRLLLANPIGLVLTAVVALGVAFYEAYKHIKPFREWVNKTAKSVANFGKGIAKWGSNVGK SIGQALGNMSKKWNSFKKSFGKSWNSHWSAMGKSLRNSWNSSVKNTRNFFSSVGSKWNGF KNSFRKSWNSHWNAMTRNLHSAWNSSYKHTRDFFSGMGTKWAGWKKSWSHSWNNHWDTMR ANLHSYWNKDLSHTRVFGHSMGDWLSAFKKSFGSGWSSLGAGVENIFRSLWSNLKRLARD GMNDVIDLINGGINAVDSVIHMFGGKRKTIADLGHVHFATGTGVFSGSRNPITRPTMAML NDGNDSPQTGNKEMVVLPNGDSGIVQGRNTKMMLPAGSEVLSASETAMLMSMQGVTKYAK GTGFFGDILNSVTSGISGVASWVGKKVGSLEKFFKTATNIIAHPIKSLENLFSWSSKGVS GVMSNIGHGLFNSVEKQAKTWWSTLWSMVDLSGGGSYGGGWQSPGSGWTHTDGFGSPRGG GVHDGNDFSARVGTPFHAMHGGTVIRVGNPPAGWGAVGYNIVTRDSTGKEIIYQEFGNAK DVRVHTGQHVKTGDTLGVLGHSGLGTGPHLHVGLTNGGSVWSRNGMSTAGWLDITKQHGK DKGSDANSDTNNSLQKMIKKQVGGGFWKFISKLADMFGDDGGSNPGGSGVQRWAPDVKKA LEILGLSTSASMVNRVLRQINTESGGNPRAKQPGADPDGDGSGPALGLMQTKRSTFNRYK LPGHGNIWNGLDDIIAGLNYAKHRYGSGLGFLGNGHGYENGGIINTNQLIEVAEHNKPEM VLPLTNKSRANQLISQASQIVNGNNGSQVMPTDSESSKKLDKLISLMSAILGNMGNVQAV IAKSDVVNAVKSDNKTASQYSQMMGY >gi|269838493|gb|ACXB01000018.1| GENE 14 15094 - 16587 1251 497 aa, chain - ## HITS:1 COG:L72137_1 KEGG:ns NR:ns ## COG: L72137_1 COG5283 # Protein_GI_number: 15672461 # Func_class: S Function unknown # Function: Phage-related tail protein # Organism: Lactococcus lactis # 1 496 13 512 1076 189 27.0 1e-47 MAKKVVGREMTSRVGLDSAEAVKSLKQLTAEVRANTSGWKAQETALKSAGEYQKAAAARV DGLIKSMEAQKAKIDELKSRQSGLNRDTKSGEEAYLKLADQINKASRSYDSMGGQLDRAK SKLQYYNSGLADLQKGYKQSTALSESYVKRLEAEGRSAEANKARLSGLKQAYSNMEAQYK AQTNELERIKNASGATSDAYKRQQVRVNETATSMAKLKSETNELDSAMNKAKPTAFTRML DSAKSKLGLVRDEEKKTKDETKHFAIGAAIGNTISNAASSAIGYIKEVTKQGYELAEAGG TIKKQWNNLGLSDSEATKMIKQIGDIRSKANMSGGAIDQMQKKFFAITNSTSKARDMTEV LASYGSAAGKSGDQIVSLTQGIAKLTGSAKVTASLFKRTFSQVPELQEAIIKASGMSTDA FNKQLATGKITGSQLQGYMVKAAKTSGRAWEEFGDTTKGKMAAIQGTYTNLKVAFAKPLV AGVEKAIDGISEKRRFR >gi|269838493|gb|ACXB01000018.1| GENE 15 16615 - 16800 228 61 aa, chain - ## HITS:1 COG:no KEGG:JDM1_0995 NR:ns ## KEGG: JDM1_0995 # Name: not_defined # Def: hypothetical protein # Organism: L.plantarum_JDM1 # Pathway: not_defined # 1 61 1 61 61 92 90.0 5e-18 MKNQQEDFNLLAQQLLTEGLSPKEFDDSPFFSMLETLNARKKEDRAELVDPLEAINQTYG L >gi|269838493|gb|ACXB01000018.1| GENE 16 16845 - 17219 471 124 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0995 NR:ns ## KEGG: PEPE_0995 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 124 1 124 124 197 95.0 1e-49 MKINVKNYFKINKTANVTPTNNIIRLATKVQIGMLESQDTEKEITELDAMKNGLELQDDM ADFVQRVMGYTDQQMETINDTVSIERFGEGVGYLIMRLNGISDADIKLSEQKQRKAIKDA KSSK >gi|269838493|gb|ACXB01000018.1| GENE 17 17295 - 17984 698 229 aa, chain - ## HITS:1 COG:no KEGG:JDM1_0993 NR:ns ## KEGG: JDM1_0993 # Name: not_defined # Def: hypothetical protein # Organism: L.plantarum_JDM1 # Pathway: not_defined # 1 223 1 212 213 372 88.0 1e-102 MSKHNIVKATFALLDDNGDLIKDATKGLSADGIYVADHNGEGFSQINVTAIEAAGTPGWG NGQIKRTAYGKSMPTLALTALDLDFRINQMLKGYTQNPNTGAWVRQLPKPHVAMIAESQS LDGDISIYECFNNIEFVEEASNNSTDTNNEAAYSTVLNGTVLTPLKPDIFLAANGVQQPY MIAKSNDPNFNLDKLYAETFGGYTKPASGATGSAASTTTVVPGSAAPSK >gi|269838493|gb|ACXB01000018.1| GENE 18 17998 - 18378 362 126 aa, chain - ## HITS:1 COG:no KEGG:JDM1_0992 NR:ns ## KEGG: JDM1_0992 # Name: not_defined # Def: hypothetical protein # Organism: L.plantarum_JDM1 # Pathway: not_defined # 1 126 1 126 126 209 91.0 3e-53 MLLPVPQVANLVDSLNLTWIDKVYLNTIPKEDLDNTDSTVMLLQETDSSPAYLANSTFKG LAMGVEIQIFYKIDLANDFNPLEAEIALMKSLKEAGWLIVSSQHHTTDPDTNQVTKTIYV TKNEMI >gi|269838493|gb|ACXB01000018.1| GENE 19 18378 - 18785 422 135 aa, chain - ## HITS:1 COG:no KEGG:JDM1_0991 NR:ns ## KEGG: JDM1_0991 # Name: not_defined # Def: hypothetical protein # Organism: L.plantarum_JDM1 # Pathway: not_defined # 1 135 1 135 135 189 91.0 3e-47 MANDDMADQLESWLKDVQKLVPNEAEQERITEAGAKKLADNLTEVTRKKHYSSHKDEKYG HMADNISYNSNDIDGEHDGSSIVGWTNKYHDMNARRLNDGTKHIRADHFVDQNLDDSQDD VFNAMLDEYKKGDDD >gi|269838493|gb|ACXB01000018.1| GENE 20 18788 - 19135 238 115 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0999 NR:ns ## KEGG: PEPE_0999 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 114 1 114 115 206 92.0 3e-52 MATNRLTPVDFNQRIEIGTVKTVQNPINGTSKQTFVSQFSLYCAPYTRSIASSYQLTAEQ LEQVVVIIRHNPKVHEGIRCKYKGKLYDVINDSMDDSSNYLSCDYLTLKRVTKGD >gi|269838493|gb|ACXB01000018.1| GENE 21 19125 - 19457 358 110 aa, chain - ## HITS:1 COG:no KEGG:PEPE_1000 NR:ns ## KEGG: PEPE_1000 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 110 1 110 110 181 91.0 8e-45 MAANLETLKSSLRIDGDDDDKLLTGYLSAATSYIKQAIGDDNSVPNFYEMEGVSDLFETA VYALAGSYWYYRTSITSNAVNPVDLVVDSIIGQLRGLYSQKQDEVNGNGN >gi|269838493|gb|ACXB01000018.1| GENE 22 19530 - 20762 1175 410 aa, chain - ## HITS:1 COG:no KEGG:PEPE_1001 NR:ns ## KEGG: PEPE_1001 # Name: not_defined # Def: phage phi-C31 GP36 major capsid-like protein # Organism: P.pentosaceus # Pathway: not_defined # 1 396 1 396 410 681 93.0 0 MANINTINDAWIAQGQKVSDLNDKLNAAVLDDNFDQEKFKAMKQDRDNAVARRDALHEQL EEERKAQEIANMNDKDKTPLDDNEKDIKAEFIKNFQGMIKGDPKVMNLVTSSTDEGGNAI GLTIPQDIQTAINTLVRQYDSLQQYVNREAVTTQTGSRVYEKWTDVTPLADLDDEIATIG DNDDPKLSIIKYTIHRYAGITTATNSLLKDTADNILAWLSQWIAKKVVVTRNAKIIEAMN NAPKKPNLSKFDDIITMINTAVDPAIKSTSFLMTNTSGLNVLSEVKDAMGRYLLQPDPTQ PDQYLIHGKRVVEVADKWLPNVGTASAPAYPLYYGDLSQAVTLFDRESTSLLTTNIGGGA FEKDQTKIRVIDRFDVEATDKDAFVAGSFSTIADQPANFAASAASTTPAK >gi|269838493|gb|ACXB01000018.1| GENE 23 20762 - 21508 924 248 aa, chain - ## HITS:1 COG:L34899 KEGG:ns NR:ns ## COG: L34899 COG0740 # Protein_GI_number: 15673378 # Func_class: O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Protease subunit of ATP-dependent Clp proteases # Organism: Lactococcus lactis # 1 242 1 235 235 227 57.0 1e-59 MTKKVMIKGDIVDDQTAGFYQFFGMPAVSPSGVADILNDDDDDDGDDEALEVDIASNGGD VFAASEIYTMLKNYAGNVTVNIQGLAASAASVIAMAGDHINISPTAQIMIHKAWSQPAGN ADDLEHEASILNGIDQSIASAYEAKTGMDQADLLQLMANETWLTASDAVDKGFADEIMFA NDQQLQPVNAISHIPPKSAVNKLMNLIYKADKDKAKPSKEENTTNSQSAELRNSKLAILF EKNQKEAN >gi|269838493|gb|ACXB01000018.1| GENE 24 21486 - 22649 962 387 aa, chain - ## HITS:1 COG:L35649 KEGG:ns NR:ns ## COG: L35649 COG4695 # Protein_GI_number: 15673379 # Func_class: S Function unknown # Function: Phage-related protein # Organism: Lactococcus lactis # 35 370 41 374 392 380 55.0 1e-105 MPFFKPPKAINNSVSIQSVPVEDDNIVNFLSPTGDNEYVSAKEALKNSDIYSAVNQISGD LATVQLTANMPRAQGILNNPSTTANGHTFWQAMYSQLLLGGECFAYRWRNPNGLDLRWEY LRPSQVQTYLLDDGSGLTYTVTFDEPDLGVLQYVPQSDMIHIRWASTDGGMTGNSPLKAL SNELQVKSSSNNLTLAALARSISAPGVLSIQHGGLLSEKMKASRSRNFMKQVNNSNGGPV VIDQLEDYKPLEMKADVTKLLSQTDWTSKQIAKVFGIPDSYLNGQGDQQSNIDQIKGMYT NALNRYLQAIIAELDNKLNAKITANIRTAVDPLGDSFATTLSGLTKNGAIANNQATWLLQ QTGYLPDEMPEAKSEKGGDNDDKESND >gi|269838493|gb|ACXB01000018.1| GENE 25 22652 - 22846 197 64 aa, chain - ## HITS:1 COG:no KEGG:PEPE_1004 NR:ns ## KEGG: PEPE_1004 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 64 1 64 64 90 92.0 1e-17 MIFRQFFATVWRYFDVLCFILGIIAGVYAAFLFGKAQGVLAIAVALFLVGWLSEVVTASQ KGGD >gi|269838493|gb|ACXB01000018.1| GENE 26 22836 - 23534 591 232 aa, chain - ## HITS:1 COG:L37002 KEGG:ns NR:ns ## COG: L37002 COG4626 # Protein_GI_number: 15673381 # Func_class: R General function prediction only # Function: Phage terminase-like protein, large subunit # Organism: Lactococcus lactis # 1 222 417 638 657 313 66.0 2e-85 MFSDNTALAFVFPYRDNNGKPRWFIYQHSFIPWQKAGSIEAKEKQDGINYRDLAKKGFCT ITSHPQGLINDEQVYQWLLNFVEQHRLEVVFFGYDSFGLTPTIKQLELNSGWPLQAIRQR TSELKDPTKFLQTMFVEGSVDRLDDRIMEKALLNAEIYEDKIGIQVDKAKATLKIDVVDA LIDALFQAMYHFEDFSDVNNPDKQVERMNEKQVLEWFNNPESGLLGDDIDDF >gi|269838493|gb|ACXB01000018.1| GENE 27 23575 - 24735 729 386 aa, chain - ## HITS:1 COG:L37002 KEGG:ns NR:ns ## COG: L37002 COG4626 # Protein_GI_number: 15673381 # Func_class: R General function prediction only # Function: Phage terminase-like protein, large subunit # Organism: Lactococcus lactis # 2 381 20 397 657 526 65.0 1e-149 MKIDLTQTHDVIGAYQALDCSALRQQYTDPGTKYAFDVLDEKVTTGYLIKLAAFRHIRDL QRQGSVEFPFTYSVKKVDQVLKFAAICPNVDTGEPTKLMLWQKFIMAMLIGWRNDDGGKR FSRAIVSVARGQGKTYLMAIITAYSFLIESLGLSNQDYLVSSINYKQTSKILGYIKSMLA KIATIEPFKSLIADSGLDTRTLSSQSDQVVMSSNNNKLRAISHEAGQYDSFHFTTAIFDE IGEIKTRQKISKIVSGQVKVRNKQFIQISTAYPDPTVPFHDDERMIQQAMEQDYLRDADT YLGLIWSQDNLNETYKPDMWVKSNPLLDLPNQREVLLNGLTDKRDSDALSGTLNDFQNKN LNLWLEQSVDSFLKLPDVEKSHCAIV >gi|269838493|gb|ACXB01000018.1| GENE 28 24738 - 25196 421 152 aa, chain - ## HITS:1 COG:L64021 KEGG:ns NR:ns ## COG: L64021 COG3747 # Protein_GI_number: 15672450 # Func_class: L Replication, recombination and repair # Function: Phage terminase, small subunit # Organism: Lactococcus lactis # 2 152 3 150 150 172 58.0 2e-43 MKKLDKDVNDGQLSRTPPAYLGRQAKVVWRRLVPFLEDNTPVKRIDSGLVEQYASQYEIY RNAYKHIQENGEVQAIYKTLQDQTGKKIGRDFVGYKRNPMTQIYDSAVKNLTKLGAELGL SPKSRSDLLKLNLDDRKDERSVADRMKEFLGG >gi|269838493|gb|ACXB01000018.1| GENE 29 25355 - 25636 344 93 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|270291375|ref|ZP_06197597.1| ## NR: gi|270291375|ref|ZP_06197597.1| predicted protein [Pediococcus acidilactici 7_4] # 1 93 4 96 96 156 100.0 4e-37 MANRYDKIPDYKVVKSAMQQELTDKQIEYVKSEIETAALKNDDKVYVDLISFNPNQKRKL GQILKEKGYQLEEDSNWSILIDLKTPVVRFKRL >gi|269838493|gb|ACXB01000018.1| GENE 30 25703 - 26209 415 168 aa, chain - ## HITS:1 COG:L39564 KEGG:ns NR:ns ## COG: L39564 COG1403 # Protein_GI_number: 15673383 # Func_class: V Defense mechanisms # Function: Restriction endonuclease # Organism: Lactococcus lactis # 1 163 1 163 171 139 43.0 3e-33 MPRVRRCRQLGCHAMVTFPDHYCQQHYEHEAEYLASRQRWARSNDKQYTHKYNTITRYRN EDKRQQYSFYRTRQWSHLRQQVLERDHYLCAYCKVQGVITPAKTVDHIVPIEFDETLKAN VDNLAVICGSCHRAKTDWEQSHYGTGQGNELKNVEPIDDVPSIVVLMN >gi|269838493|gb|ACXB01000018.1| GENE 31 26700 - 27161 295 153 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0777 NR:ns ## KEGG: PEPE_0777 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 147 1 147 152 202 65.0 4e-51 MTLLPELDDEKTIQNVRLFFEKDFEKLQRMAHIAYVDIGSPVISGMPATHSSDNANESKS TLHVYAKDMLEKVKKACCGMDRLHREFMEYRYFKRLKWYEIEAITGYHRSRGNEILNEAC LQFAWAFADTEDFRVFKIGHSPDKGATLSGHDR >gi|269838493|gb|ACXB01000018.1| GENE 32 27243 - 27428 145 61 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MWFEIVVIIFLFIITCVLGDVWSVLKSILAHLMIHDQVKMTTNEFQTMTNLKKMWKKFDD E >gi|269838493|gb|ACXB01000018.1| GENE 33 27442 - 27600 294 52 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTVYVLYWQEYDEVQIMGVYSDRKKAEEAIDEIDDRGYEWLGYHIEEHILDC >gi|269838493|gb|ACXB01000018.1| GENE 34 27618 - 27803 108 61 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFKKLKEKLVRESINSEGQTYKYIYNYNYTFTTNCSCGCEPNIEQAEKMVDMAKRNADKE K >gi|269838493|gb|ACXB01000018.1| GENE 35 27821 - 28093 413 90 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIKTNELSCNMEITGIELENPYRYRAYFIGTQAMYNNENESYITVESGNVSDIKPIYDDN GDIVSYAIEFDSGECVEVIANVSGLIVHYN >gi|269838493|gb|ACXB01000018.1| GENE 36 28086 - 28274 220 62 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFLLWYFSCVLWLFPAVLIGHAVHSGIVGVAIFITAIILQTWISGITYFLKEFTKKGEIK ND >gi|269838493|gb|ACXB01000018.1| GENE 37 28277 - 28648 386 123 aa, chain - ## HITS:1 COG:no KEGG:PEPE_1013 NR:ns ## KEGG: PEPE_1013 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 123 1 123 123 168 70.0 5e-41 MYVIRNTANNRYYRRLGGQAHQYVGIEDATVFRKWKQAKQKSDILHAAISPIGEQVNFEV KQHKFYVLKNKYDKGYMNQISWNAPKEEAKLFAKKEAALKEAKEIAVGMAKVGIDVEFGP EEV >gi|269838493|gb|ACXB01000018.1| GENE 38 28648 - 28785 213 45 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTVEEIVREIYGNNYTIEDLKRIEKAIAEEQEHWRKKKFKKGDGK >gi|269838493|gb|ACXB01000018.1| GENE 39 29173 - 29805 659 210 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|270291380|ref|ZP_06197602.1| ## NR: gi|270291380|ref|ZP_06197602.1| predicted protein [Pediococcus acidilactici 7_4] # 1 210 4 213 213 370 100.0 1e-101 MWQLVGVNSKEVYGKSEHKSDLHKQMLKTYTKYDGDRKDSIYMDMPEPMRYVRVGTAAKQ SDIEQELLDRGDYEGFRKARGLSISKIKKRKYIGEISMTKHKMKVARQSLIPELLDKNLS YADIAWKLGVEVQTIYSDLRELGIEIKKGKNKRTPKKWTKKEDAFLIAERSKGAKFDEIA EKLGMASYNVASHWYKVCKKEAPSIDQVKN >gi|269838493|gb|ACXB01000018.1| GENE 40 29783 - 29923 67 46 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MCQLCEGTQVIYQVDGAIMQVKPCPNCNVEYRKEKEREANVAIGRG >gi|269838493|gb|ACXB01000018.1| GENE 41 29923 - 30738 468 271 aa, chain - ## HITS:1 COG:L0311 KEGG:ns NR:ns ## COG: L0311 COG1484 # Protein_GI_number: 15672431 # Func_class: L Replication, recombination and repair # Function: DNA replication protein # Organism: Lactococcus lactis # 34 267 56 288 291 139 36.0 5e-33 MAGLNFELLKHVKNTNQYCQVHPDQKLLMLANHIPFCPRCVEEKRRHKNNELVTIGAMRN YKRGFHDVLRKDSIIDDEDLWQASFDNYEVKAGSEAESNLKKAKQIAYRYMDRSYQANTI ITGKPGVGKSHLAISMLKGVNENIKPNASCLFISINEMMRKIKDSFEHRDSYYTESRMVD LLGKVNLLVLDDLGSEASFKRESREASEYVQQVLFGVLNKRSRTIITTNLSSKELSEIYN PKLLSRMYKGVVKNNAIIKFEKTEDKRMAIF >gi|269838493|gb|ACXB01000018.1| GENE 42 30719 - 31459 545 246 aa, chain - ## HITS:1 COG:no KEGG:PEPE_1019 NR:ns ## KEGG: PEPE_1019 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 246 1 247 247 423 91.0 1e-117 MAQRRMFSKKITDTDTFLDMPLSSQALYFHLNMHADDDGFVSNAKTIKRMIGSSDDDLKL LLTKQFIFAFESGVVVIKDWKIHNYIRKDTYNTTIYGDEKEQLEQDANGSYTLRLRAVDE PSTQVRLGKVRLGKDSNIYSSSNDEPHIDLKKFKEIISYLNEKAGTKYRASGSKTQRLIK ARFNDGFNDEDFKKVIDIKVAEWSGTDMAKYLRPETLFGTKFESYLNQQIKPKVEKGTKS YGGIEF >gi|269838493|gb|ACXB01000018.1| GENE 43 31489 - 31713 232 74 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKLSEKPLNAEIDQHMQNIYKLKGQNLLILEQSLKLANEIVEEMQKKGASYLEIQEALIL VDNWLYSKAINQKL >gi|269838493|gb|ACXB01000018.1| GENE 44 31703 - 32380 391 225 aa, chain - ## HITS:1 COG:no KEGG:PEPE_1020 NR:ns ## KEGG: PEPE_1020 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 222 1 222 225 419 89.0 1e-116 MQRARAEQRGRDLIIHLDRPLNQDHLETVSGGQGEFYVDFEVADPRKVRAQQRRLFFALL HDIETYFVVPSEFLKSMFYTQYEFYTAGKSISLSDATESSVSDANQLLDLVIDFMFEWRV PFKKGYELLPKEENYYLYQCCRHRVCTICSKHADIHHIDVVGRTNRNKVDHTKRHVMALC RVHHSEIESIGSAKFAAKYHVPVNGIKLSVEDLKRLKIRGNYDET >gi|269838493|gb|ACXB01000018.1| GENE 45 32392 - 32817 407 141 aa, chain - ## HITS:1 COG:L0300 KEGG:ns NR:ns ## COG: L0300 COG0629 # Protein_GI_number: 15673001 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-binding protein # Organism: Lactococcus lactis # 1 141 1 150 150 162 59.0 1e-40 MINRTILIGRLTKDVELRHTAKGDAVASFTVAVNRQFTNSQGEREADFINCVMWRKAAEN FAKYTQKGSLVGIDGRIQTRSYENQQGQRVYVTEVVADNFSLLDSKPKGNQQNNARQSTT PGDPFANGGQSIDIGDDDLPF >gi|269838493|gb|ACXB01000018.1| GENE 46 32810 - 33016 226 68 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNENYELGYENGQIAMLDALNQKLTNISEPLYRRLLKDGKLDSAGNAQLDVLNSIRDWQI ERIEELHD >gi|269838493|gb|ACXB01000018.1| GENE 47 33009 - 33734 684 241 aa, chain - ## HITS:1 COG:no KEGG:PEPE_1022 NR:ns ## KEGG: PEPE_1022 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 24 230 4 210 218 246 63.0 4e-64 MATSKAEPKEEVKPKTPAKKAKSKTLYQKLQKIHASAKYVQKSQRSTQYSYAGSSDVLGQ IHELMDQEGVLLIPRITSKNVMTSSNKKGAVVYFTELIMTMTWINSDNPEETIECPWYAQ GVDTAGEKGVGKALTYGEKYFLLKFFNIATDDMDPDSFQKNVESKKQPDPISSEQNETLT ALFKTMATATGKPEPVVKSAYLSKAHVAHINDLNYETANQMIVLVTKQLDHVSKTQEGHH E >gi|269838493|gb|ACXB01000018.1| GENE 48 33735 - 34187 309 150 aa, chain - ## HITS:1 COG:no KEGG:PEPE_1023 NR:ns ## KEGG: PEPE_1023 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 3 150 4 152 153 146 53.0 2e-34 MKIDELEAKRNELDRKLRKLKHDKEGINIKIDELRDQISTVEQEELKLFQGRELQTATWR FLRTESNPSKPTWWQVTKATDIKPKKMVEILSGVDEALVKQEPNLSAVKRMVADGRFVPK GDKLVDMETGALLPYTAVQKPDRLTVKAVD >gi|269838493|gb|ACXB01000018.1| GENE 49 34177 - 34284 135 35 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNNQQLSPCLERAWELERENKEVETLFGGNEHDED >gi|269838493|gb|ACXB01000018.1| GENE 50 34416 - 34682 358 88 aa, chain + ## HITS:1 COG:no KEGG:PEPE_1025 NR:ns ## KEGG: PEPE_1025 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 88 1 88 88 120 95.0 1e-26 MQLSNEQIMKLIDKHMDAAWTEESIQAEMKYVASNIQNSSDTQLNQEQINALANSLQYIN KITTKQTLITLFNVFTEMGIFVGSNGQN >gi|269838493|gb|ACXB01000018.1| GENE 51 34639 - 34896 307 85 aa, chain - ## HITS:1 COG:no KEGG:PEPE_1026 NR:ns ## KEGG: PEPE_1026 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 85 1 85 85 82 55.0 3e-15 MKLVKIDDYTYVNPALIGAIEDGRFGANVYLTGSDKPIETLADTEKVLDAICGSEEHLVN DADMKILKSESINSGHLNQQKYPSR >gi|269838493|gb|ACXB01000018.1| GENE 52 34910 - 34993 82 27 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRILIAMLIIAGMAYAFGRFGFNSFFE >gi|269838493|gb|ACXB01000018.1| GENE 53 34996 - 35325 356 109 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|270291387|ref|ZP_06197609.1| ## NR: gi|270291387|ref|ZP_06197609.1| predicted protein [Pediococcus acidilactici 7_4] # 1 109 1 109 109 174 100.0 2e-42 MAQIVEANIKFEIPADKVLVDRIEWETTKKKAEAHEIWKMDDLKNYMLNKSTQWITANVL ANPHLYKQLQELRNKGALGGGGKGGTWWMFADDIKQFIDDNKEVIMRGN >gi|269838493|gb|ACXB01000018.1| GENE 54 35339 - 36061 566 240 aa, chain - ## HITS:1 COG:HI1412 KEGG:ns NR:ns ## COG: HI1412 COG3646 # Protein_GI_number: 16273319 # Func_class: S Function unknown # Function: Uncharacterized phage-encoded protein # Organism: Haemophilus influenzae # 10 102 19 115 173 70 38.0 2e-12 MNELVIMKGQQAVTTSLQVAEVFGKNHQHVLRDIDSLKDVSNFGQIFSKGSEPDSYGRDR RVYFMNRDGFTLLAMGFTGKKALEFKLKYIEAFNQMEKTIKEHRTELPTDPMDVLRLVFN ATENTNKKVDRIDTDVDYLKNNQRLDVGEYGYISRRVSEKVNEYIKIHGLTLTAAQRSKL FKDINRGLNEVTGIKTRSQLRQKDFEKADEFISNWQPSTATVQIIKEMSKVPAGQTTLGE >gi|269838493|gb|ACXB01000018.1| GENE 55 36075 - 36278 124 67 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0749 NR:ns ## KEGG: PEPE_0749 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 67 3 69 69 94 94.0 2e-18 EEATLENQALELQLKIEVARKRKGMTQEQLTAAIGEKWPSVVSRAIRGDQSPKSKRVREK IYKVLGL Prediction of potential genes in microbial genomes Time: Fri May 27 06:59:51 2011 Seq name: gi|269838492|gb|ACXB01000019.1| Pediococcus acidilactici 7_4 cont1.19, whole genome shotgun sequence Length of sequence - 4751 bp Number of predicted genes - 5, with homology - 5 Number of transcription units - 4, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 3 - 410 237 ## PEPE_1035 hypothetical protein 2 1 Op 2 . + CDS 473 - 1600 1068 ## PEPE_1036 hypothetical protein + Prom 1628 - 1687 4.0 3 2 Tu 1 . + CDS 1747 - 1944 147 ## PEPE_1037 hypothetical protein + Term 2133 - 2169 -0.8 + Prom 2051 - 2110 5.8 4 3 Tu 1 . + CDS 2351 - 3352 286 ## EUBREC_1256 hypothetical protein + Prom 3401 - 3460 2.4 5 4 Tu 1 . + CDS 3493 - 4608 756 ## COG0582 Integrase Predicted protein(s) >gi|269838492|gb|ACXB01000019.1| GENE 1 3 - 410 237 135 aa, chain + ## HITS:1 COG:no KEGG:PEPE_1035 NR:ns ## KEGG: PEPE_1035 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 40 135 7 102 102 150 79.0 1e-35 MDDLMTFLRDYAFTNQIGYQFDSIREPDQAPKSNTALRVVFMNNNWNTPEEIPFQFAHEI SHILNGDSGSNNFCASSVYSKEEYQANKRATKILLEYCDLNGLTFYNSTEFMNAFGIPPK AGYVVDDVFKEKLSI >gi|269838492|gb|ACXB01000019.1| GENE 2 473 - 1600 1068 375 aa, chain + ## HITS:1 COG:no KEGG:PEPE_1036 NR:ns ## KEGG: PEPE_1036 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 375 1 375 375 457 82.0 1e-127 MKKVYTLSAITLASIALVACGNNNKNGSTVSSATNTSKNIGSNTKNSSVKTHQIHVAKNE IVNPGKGKMKILGFKSLSYKGKPAYAVEWKFTNTSKKQLTADDIDQGTHTYFQKNGNSEK SISSSDVYILSADQANYDSVSDNNTDAYNDAVAQYNVLGKESDRSSEDKIEPGKSVNLLG GELIIPVSKENIKVQVGNHNKSDTDVDMSKDNFIIKYNELSSKHFTNDLVEELKKDYANE ASDQLSQKDEKSSDSNLQSQDSTNEKVSNKNKNMSATQQKTQGEKNREQGYDPKGNKVMP GQDHAPGSNVYGNEDDWVKGQDQDNGTDSPTQSAMDDPNSAENKAAHAKGGMMYGAPDNV TEGDWQRSEDAANTK >gi|269838492|gb|ACXB01000019.1| GENE 3 1747 - 1944 147 65 aa, chain + ## HITS:1 COG:no KEGG:PEPE_1037 NR:ns ## KEGG: PEPE_1037 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 65 1 65 65 72 92.0 4e-12 METSIMAIIGIIIFFIGALIIPLGRTLNVLRFFFGDRSLFTQIFWGVIFICIGLFLIILG SPQLR >gi|269838492|gb|ACXB01000019.1| GENE 4 2351 - 3352 286 333 aa, chain + ## HITS:1 COG:no KEGG:EUBREC_1256 NR:ns ## KEGG: EUBREC_1256 # Name: not_defined # Def: hypothetical protein # Organism: E.rectale # Pathway: not_defined # 1 314 1 296 352 124 29.0 6e-27 MKKEKPFKTIDEQISILKERGLLFLNEPAARDTLITFGYYEIINGYKYSFLIDPKDDTKG FKPNTTFEHIFALFELDRKLRIYVLDAMERFEQSFKQALAYVIAGEISEISSRYLAVSHY NTGRARRGRSKNDREFLLFNCQKVLKNENDPYKYYHDKYGNIPPWILVKGLQFGNAIALF KLSKPTIRNKVICRMTNIDYELLDSIDEDFSVRQSFNDLLALFLNYRNIAAHGGRIYSHR TKKYKVRNSRFIYRDNFFMHLDENSNKNFNSSLGLIIRALDLFRDANNYSELLAHTQVAL ESYFDKYPDDRDFIFRETQLKNTYIERITKRTI >gi|269838492|gb|ACXB01000019.1| GENE 5 3493 - 4608 756 371 aa, chain + ## HITS:1 COG:BH3551 KEGG:ns NR:ns ## COG: BH3551 COG0582 # Protein_GI_number: 15616113 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Bacillus halodurans # 1 360 1 374 378 162 33.0 1e-39 MASIKKQNGKWTARITWRDEEGKRHYKSKYNFKTQSEAELWAADFQLNKRDIDSETYFPA YFYDWYLTYKEPSVTNRTKATYMQLYNVLKKSLLAKKPVGEITRKDYQRFINVFGKKHAK STVTKFNSLIHACVKDALYDKAIEKDFVYGVSMVFNKSKTRKIDYLNIDEMNTLSTYLRS SLNKHFTSKYMILTAIYTGARLGEIQALTWKDINTTFNTISIRRSWNDEEQKFQPTKNES SVRIIKINDDLAQLLKQLKPKSSSTKIFTNQYGTVPSSSAVNKTLRESLAHCGIDKPSFH FHSLRHTHVAYLLSENVDLFIISKRLGHSDISTTSRVYSYLIDEYKQKADLRIEKSLDKI SLNSKNVRKIL Prediction of potential genes in microbial genomes Time: Fri May 27 07:00:34 2011 Seq name: gi|269838491|gb|ACXB01000020.1| Pediococcus acidilactici 7_4 cont1.20, whole genome shotgun sequence Length of sequence - 94831 bp Number of predicted genes - 95, with homology - 91 Number of transcription units - 43, operones - 23 average op.length - 3.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 348 - 407 9.5 1 1 Op 1 . + CDS 454 - 1173 284 ## gi|270291393|ref|ZP_06197615.1| predicted protein 2 1 Op 2 . + CDS 1215 - 1901 333 ## PEPE_0124 hypothetical protein + Term 1957 - 2000 10.0 - Term 1945 - 1986 9.6 3 2 Tu 1 . - CDS 2192 - 2518 417 ## PEPE_1359 hypothetical protein - Prom 2564 - 2623 6.7 - Term 2649 - 2685 3.1 4 3 Tu 1 . - CDS 2714 - 2962 328 ## COG2261 Predicted membrane protein - Prom 2997 - 3056 6.8 + Prom 3106 - 3165 5.7 5 4 Tu 1 . + CDS 3186 - 3782 579 ## COG3548 Predicted integral membrane protein + Term 3869 - 3902 2.3 - Term 3857 - 3890 2.3 6 5 Tu 1 . - CDS 3932 - 5257 1286 ## COG1757 Na+/H+ antiporter - Prom 5341 - 5400 7.6 - Term 5562 - 5604 8.1 7 6 Op 1 . - CDS 5663 - 6838 1191 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases 8 6 Op 2 . - CDS 6823 - 6966 62 ## - Prom 7015 - 7074 4.1 - Term 7007 - 7048 6.2 9 7 Tu 1 . - CDS 7096 - 8556 1181 ## COG0753 Catalase - Prom 8623 - 8682 7.4 10 8 Op 1 . - CDS 8740 - 9516 517 ## gi|270291401|ref|ZP_06197623.1| ABC transporter subunit PenK 11 8 Op 2 . - CDS 9513 - 10409 935 ## COG1131 ABC-type multidrug transport system, ATPase component 12 8 Op 3 . - CDS 10411 - 10605 261 ## - Prom 10706 - 10765 10.6 - Term 10805 - 10858 5.3 13 9 Op 1 7/0.000 - CDS 10933 - 11451 675 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins 14 9 Op 2 2/0.000 - CDS 11452 - 13773 2079 ## COG0608 Single-stranded DNA-specific exonuclease 15 9 Op 3 4/0.000 - CDS 13791 - 14576 666 ## COG0300 Short-chain dehydrogenases of various substrate specificities 16 9 Op 4 . - CDS 14635 - 15627 710 ## COG1234 Metal-dependent hydrolases of the beta-lactamase superfamily III - Prom 15808 - 15867 4.4 + Prom 15594 - 15653 7.0 17 10 Tu 1 . + CDS 15692 - 15994 298 ## PEPE_1133 hypothetical protein + Term 16012 - 16053 0.6 18 11 Op 1 . - CDS 16062 - 17357 1393 ## COG0536 Predicted GTPase 19 11 Op 2 . - CDS 17397 - 19181 1264 ## COG0322 Nuclease subunit of the excinuclease complex - Prom 19217 - 19276 6.6 20 12 Op 1 34/0.000 - CDS 19347 - 20090 546 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 21 12 Op 2 . - CDS 20090 - 21559 1130 ## COG0765 ABC-type amino acid transport system, permease component - Prom 21642 - 21701 7.7 + Prom 21532 - 21591 5.7 22 13 Tu 1 . + CDS 21738 - 21968 207 ## - Term 21865 - 21925 3.1 23 14 Op 1 . - CDS 21936 - 22226 387 ## COG1694 Predicted pyrophosphatase 24 14 Op 2 4/0.000 - CDS 22229 - 22816 512 ## COG0218 Predicted GTPase - Prom 22839 - 22898 5.9 25 14 Op 3 4/0.000 - CDS 22911 - 24167 279 ## PROTEIN SUPPORTED gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 - Prom 24191 - 24250 5.0 - Term 24265 - 24305 7.5 26 14 Op 4 . - CDS 24387 - 25703 1568 ## COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) - Prom 25755 - 25814 7.5 - Term 25792 - 25830 6.2 27 15 Tu 1 . - CDS 25849 - 27036 1403 ## PROTEIN SUPPORTED gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 - Prom 27158 - 27217 7.5 28 16 Op 1 . - CDS 27219 - 28088 754 ## PEPE_1144 BS_ysoA-like protein 29 16 Op 2 2/0.000 - CDS 28088 - 29791 1604 ## COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily - Prom 29840 - 29899 11.5 - Term 30193 - 30243 7.2 30 17 Tu 1 . - CDS 30251 - 30520 437 ## PROTEIN SUPPORTED gi|116492907|ref|YP_804642.1| SSU ribosomal protein S15P - Prom 30608 - 30667 5.9 + Prom 30633 - 30692 7.2 31 18 Tu 1 . + CDS 30724 - 30978 376 ## PROTEIN SUPPORTED gi|116492908|ref|YP_804643.1| SSU ribosomal protein S20P + Term 30984 - 31012 1.0 - Term 30971 - 30999 1.0 32 19 Op 1 4/0.000 - CDS 31005 - 32024 975 ## COG1466 DNA polymerase III, delta subunit 33 19 Op 2 4/0.000 - CDS 32021 - 34279 908 ## COG2333 Predicted hydrolase (metallo-beta-lactamase superfamily) 34 19 Op 3 4/0.000 - CDS 34269 - 34718 241 ## COG2131 Deoxycytidylate deaminase 35 19 Op 4 . - CDS 34766 - 35446 669 ## COG1555 DNA uptake protein and related DNA-binding proteins - Term 35467 - 35499 2.0 36 20 Op 1 14/0.000 - CDS 35506 - 35988 306 ## PROTEIN SUPPORTED gi|163764798|ref|ZP_02171851.1| ribosomal protein S19 37 20 Op 2 . - CDS 36021 - 36575 434 ## PROTEIN SUPPORTED gi|163764797|ref|ZP_02171850.1| ribosomal protein L29 38 20 Op 3 . - CDS 36572 - 36835 303 ## PEPE_1154 hypothetical protein 39 20 Op 4 . - CDS 36836 - 38038 1034 ## COG0772 Bacterial cell division membrane protein - Prom 38065 - 38124 5.7 - Term 38088 - 38138 13.7 40 21 Op 1 1/0.000 - CDS 38193 - 40037 2156 ## COG1217 Predicted membrane GTPase involved in stress response - Term 40070 - 40107 1.2 41 21 Op 2 2/0.000 - CDS 40115 - 40897 748 ## COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family 42 21 Op 3 . - CDS 40884 - 41180 339 ## COG4476 Uncharacterized protein conserved in bacteria - Prom 41219 - 41278 6.5 + Prom 41181 - 41240 10.0 43 22 Tu 1 . + CDS 41263 - 41817 648 ## COG0242 N-formylmethionyl-tRNA deformylase + Term 41838 - 41889 11.5 - Term 41819 - 41883 14.7 44 23 Tu 1 . - CDS 41888 - 42346 424 ## PEPE_1160 hypothetical protein - Prom 42366 - 42425 5.7 + Prom 42330 - 42389 5.7 45 24 Op 1 . + CDS 42499 - 42714 327 ## PEPE_1161 RNA-binding protein 46 24 Op 2 . + CDS 42718 - 44394 1457 ## COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily + Term 44404 - 44440 4.1 - Term 44547 - 44583 5.0 47 25 Tu 1 . - CDS 44609 - 46045 1429 ## COG0791 Cell wall-associated hydrolases (invasion-associated proteins) - Prom 46077 - 46136 8.2 - Term 46351 - 46396 -0.9 48 26 Op 1 19/0.000 - CDS 46407 - 48350 2348 ## COG1299 Phosphotransferase system, fructose-specific IIC component 49 26 Op 2 10/0.000 - CDS 48361 - 49272 824 ## COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) 50 26 Op 3 . - CDS 49269 - 49727 326 ## COG1349 Transcriptional regulators of sugar metabolism 51 26 Op 4 . - CDS 49812 - 50018 290 ## PEPE_1166 lactose transport regulator - Prom 50220 - 50279 9.7 - Term 50274 - 50316 5.2 52 27 Tu 1 . - CDS 50377 - 51429 1122 ## COG0628 Predicted permease - Prom 51460 - 51519 8.1 - Term 51443 - 51487 12.4 53 28 Op 1 . - CDS 51526 - 52500 862 ## COG0462 Phosphoribosylpyrophosphate synthetase 54 28 Op 2 . - CDS 52567 - 55077 2390 ## COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member 55 28 Op 3 . - CDS 55077 - 55736 679 ## PEPE_1170 TPR repeat-containing protein 56 28 Op 4 . - CDS 55746 - 56420 540 ## COG0406 Fructose-2,6-bisphosphatase - Prom 56448 - 56507 4.8 - Term 56503 - 56540 6.0 57 29 Tu 1 . - CDS 56625 - 57758 1255 ## COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain - Prom 57824 - 57883 3.7 58 30 Op 1 . - CDS 57885 - 58226 423 ## PEPE_1173 hypothetical protein 59 30 Op 2 . - CDS 58239 - 59399 1044 ## COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes 60 30 Op 3 . - CDS 59396 - 60100 792 ## COG0775 Nucleoside phosphorylase 61 30 Op 4 . - CDS 60113 - 60364 187 ## PEPE_1176 small membrane protein 62 30 Op 5 2/0.000 - CDS 60373 - 60912 685 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 63 30 Op 6 . - CDS 60912 - 61124 207 ## COG1278 Cold shock proteins - Prom 61147 - 61206 6.2 - Term 61179 - 61211 3.3 64 31 Op 1 6/0.000 - CDS 61280 - 64081 2348 ## COG0060 Isoleucyl-tRNA synthetase - Prom 64110 - 64169 4.3 - Term 64286 - 64340 -0.2 65 31 Op 2 6/0.000 - CDS 64359 - 65087 704 ## COG3599 Cell division initiation protein 66 31 Op 3 7/0.000 - CDS 65111 - 65896 631 ## PROTEIN SUPPORTED gi|28378794|ref|NP_785686.1| cell division protein (putative) 67 31 Op 4 . - CDS 65889 - 66170 378 ## COG0762 Predicted integral membrane protein - Term 66197 - 66233 7.3 68 32 Op 1 35/0.000 - CDS 66246 - 67568 1378 ## COG0206 Cell division GTPase 69 32 Op 2 25/0.000 - CDS 67592 - 68947 1256 ## COG0849 Actin-like ATPase involved in cell division - Prom 69002 - 69061 10.0 70 33 Op 1 3/0.000 - CDS 69104 - 70210 737 ## COG1589 Cell division septal protein 71 33 Op 2 4/0.000 - CDS 70217 - 71308 1028 ## COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase 72 33 Op 3 28/0.000 - CDS 71305 - 72699 1374 ## COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase 73 33 Op 4 4/0.000 - CDS 72712 - 73668 801 ## COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase 74 33 Op 5 . - CDS 73684 - 75849 1940 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 75 33 Op 6 . - CDS 75846 - 76235 208 ## PEPE_1190 cell division protein FtsL 76 33 Op 7 29/0.000 - CDS 76242 - 77195 866 ## COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis 77 33 Op 8 . - CDS 77201 - 77632 430 ## COG2001 Uncharacterized protein conserved in bacteria - Prom 77828 - 77887 9.0 + Prom 77792 - 77851 6.6 78 34 Tu 1 . + CDS 77877 - 78005 127 ## + Term 78072 - 78118 6.6 - Term 78169 - 78212 9.2 79 35 Op 1 . - CDS 78280 - 80631 2092 ## COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins 80 35 Op 2 . - CDS 80640 - 81158 486 ## COG0219 Predicted rRNA methylase (SpoU class) - Prom 81182 - 81241 1.7 - Term 81176 - 81228 7.2 81 36 Op 1 . - CDS 81328 - 82473 1129 ## COG0628 Predicted permease 82 36 Op 2 . - CDS 82491 - 82847 482 ## COG3731 Phosphotransferase system sorbitol-specific component IIA - Prom 83085 - 83144 5.3 + Prom 82890 - 82949 5.3 83 37 Op 1 . + CDS 82979 - 83992 1004 ## COG2706 3-carboxymuconate cyclase 84 37 Op 2 . + CDS 84007 - 84636 785 ## COG3142 Uncharacterized protein involved in copper resistance + Term 84645 - 84711 15.6 - Term 84638 - 84691 9.3 85 38 Op 1 1/0.000 - CDS 84717 - 86066 1369 ## COG2239 Mg/Co/Ni transporter MgtE (contains CBS domain) 86 38 Op 2 7/0.000 - CDS 86066 - 86971 297 ## PROTEIN SUPPORTED gi|238855152|ref|ZP_04645474.1| pseudouridine synthase, RluA family 87 38 Op 3 6/0.000 - CDS 86961 - 87779 691 ## COG0061 Predicted sugar kinase 88 38 Op 4 . - CDS 87772 - 88386 665 ## COG2357 Uncharacterized protein conserved in bacteria - Prom 88441 - 88500 5.7 + Prom 88465 - 88524 7.3 89 39 Tu 1 . + CDS 88552 - 89142 517 ## COG2761 Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis + Term 89182 - 89231 7.0 - Term 89249 - 89280 1.7 90 40 Op 1 3/0.000 - CDS 89306 - 90355 710 ## COG4469 Competence protein - Prom 90426 - 90485 4.9 - Term 90449 - 90498 10.2 91 40 Op 2 2/0.000 - CDS 90521 - 91243 817 ## COG4862 Negative regulator of genetic competence, sporulation and motility - Prom 91294 - 91353 7.1 - Term 91387 - 91427 6.3 92 40 Op 3 . - CDS 91492 - 91890 377 ## COG1393 Arsenate reductase and related proteins, glutaredoxin family - Prom 91934 - 91993 7.4 93 41 Tu 1 . - CDS 92144 - 92881 678 ## COG1234 Metal-dependent hydrolases of the beta-lactamase superfamily III - Prom 92964 - 93023 6.1 + Prom 92817 - 92876 5.8 94 42 Tu 1 . + CDS 93003 - 93458 412 ## PEPE_1209 monooxygenase + Prom 93470 - 93529 3.2 95 43 Tu 1 . + CDS 93570 - 93731 94 ## PEPE_1210 hypothetical protein + Term 93747 - 93798 1.7 - TRNA 93902 - 93972 66.6 # Cys GCA 0 0 - TRNA 94049 - 94132 60.4 # Leu CAA 0 0 - TRNA 94177 - 94249 64.1 # His GTG 0 0 - TRNA 94255 - 94328 64.7 # Trp CCA 0 0 - TRNA 94382 - 94454 73.8 # Phe GAA 0 0 - TRNA 94480 - 94553 77.6 # Asp GTC 0 0 - TRNA 94569 - 94641 87.2 # Val TAC 0 0 - TRNA 94646 - 94717 66.7 # Glu TTC 0 0 - TRNA 94731 - 94822 62.0 # Ser GGA 0 0 Predicted protein(s) >gi|269838491|gb|ACXB01000020.1| GENE 1 454 - 1173 284 239 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|270291393|ref|ZP_06197615.1| ## NR: gi|270291393|ref|ZP_06197615.1| predicted protein [Pediococcus acidilactici 7_4] # 1 239 1 239 239 427 100.0 1e-118 MNKRDLLAYQLLQFFSQNNVKPISTSSLAEIFNTTPYKIEASIATLNADLQTITANDHSV YISEKSYKGIWSGHNLFQIIVDKVKLHYIERSTAFRAMEYLLFYNDLVTPKKYIPKAFSS RAVFYRQLTLVKQLLTDEFNNLTIQTGKDREFQIRLEIIELYEQIYKGLKEPFPELDPLI SGIFDSLTPFLNINYNMAKNLNYQYFYEFGYYAIITTSMFVFQRLIRLMLNATTKFITF >gi|269838491|gb|ACXB01000020.1| GENE 2 1215 - 1901 333 228 aa, chain + ## HITS:1 COG:no KEGG:PEPE_0124 NR:ns ## KEGG: PEPE_0124 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 51 215 301 468 481 92 32.0 1e-17 MLFLYGFLLNQDCLDYAGIPKDTCNYQLVNKITDDFLNWIKSFNILADFPLEVEQSLRKD LINVNLKLFSYYAELLDATYKNSIHTLRENYPTFDILIQQFWQKLAAQPELKKYHLNKYN LYYGYMLALANNIPAKYSRDRVRVVIDFSKGSLYSQYVDNTLKSLYGNNVILTNHLEPQS DLFLSDTYSYKIKIPQLIWKSFPTVADWTNLITLIKETRSAKARQFFK >gi|269838491|gb|ACXB01000020.1| GENE 3 2192 - 2518 417 108 aa, chain - ## HITS:1 COG:no KEGG:PEPE_1359 NR:ns ## KEGG: PEPE_1359 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 107 1 107 125 107 51.0 2e-22 MRDAGRVLAILVAAVVIIFGWKYYQDNYQAETAYAVVPNEVPAKKQATDDSGKKISGVHA YDYKFEFVLKNGEKRTLDYELTGEKVKPFTPNAVVKAEISKKTGNKGT >gi|269838491|gb|ACXB01000020.1| GENE 4 2714 - 2962 328 82 aa, chain - ## HITS:1 COG:SPy1265 KEGG:ns NR:ns ## COG: SPy1265 COG2261 # Protein_GI_number: 15675224 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pyogenes M1 GAS # 1 82 1 82 82 72 64.0 2e-13 MGIIWTLIVGAIIGAIAGALTSRDLPAGWIGNIVAGLVGAWLGQSLLGTWGPSLAGMALI PSIIGAVVLVAVVSWFLQSRKN >gi|269838491|gb|ACXB01000020.1| GENE 5 3186 - 3782 579 198 aa, chain + ## HITS:1 COG:mlr1523 KEGG:ns NR:ns ## COG: mlr1523 COG3548 # Protein_GI_number: 13471525 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Mesorhizobium loti # 1 123 56 178 246 95 42.0 5e-20 MNKARVEAFTDAVLAIILTIMILELKVPDSNQLSAILSELPYLFSYTVGYLLIGVAWYSH HYMFSKTSGISKRVYWANNFWMFTTSFIPMATAWIGRDLKAQGPEIFYAIVFYIWTAAYL ILSYVISNDDLKRKQYKKAHDIRKMKIYQYLTNVKYMLIQTILLIIILVFKPEFLLAVVL WQILAFAIWNNDDSDKLF >gi|269838491|gb|ACXB01000020.1| GENE 6 3932 - 5257 1286 441 aa, chain - ## HITS:1 COG:FN0624 KEGG:ns NR:ns ## COG: FN0624 COG1757 # Protein_GI_number: 19703959 # Func_class: C Energy production and conversion # Function: Na+/H+ antiporter # Organism: Fusobacterium nucleatum # 7 430 12 429 444 276 43.0 4e-74 MEKKTRKDYGAAGLLPLLIFLVLYVGCLAVFTIKGAKDPSSYMPRQVAILVALLFALIFF EPRAKFAKKMNIYLNNAGNAGVMNLSLIVMMAGGFSSAVAISGGQSSIVNLGTSLIPSQF LVPGIFLIAAIISLCIGTSTGTIVTMAPVTFSLVAAAHLNAGMAGAAVITGSYFGDGLSM IGGTTISAAAGVGARMRDKFLWQIKIAVPAAVITIIIYTLMSLNNSSASNIHAGSYNVIT ILPYLVVLILAVMGMDVVLVLALGTVMASAIGMALGKASLFACAKAIGNGMESMFWLAIF AMMVNGMVALMRHYGGIDWMVHVFTRHIKSKASCEALIGILSFCVTGAIVNNNISVLITS PIAKELGDQYQVDKKVLAGVISIFAVTASMVIPQDSAMMMTLQLAGKSTNYLDLIRYMVY PVVLMGLTFIVNYINAKRSAA >gi|269838491|gb|ACXB01000020.1| GENE 7 5663 - 6838 1191 391 aa, chain - ## HITS:1 COG:lin0289 KEGG:ns NR:ns ## COG: lin0289 COG0624 # Protein_GI_number: 16799366 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Listeria innocua # 13 386 4 378 378 285 43.0 9e-77 MDIELKRPVFTNEDCIAILGDLIAINSTNDHEITVAKYLQKLLKENGIDAKVLRYSDTRA DLLAEIGSGSPVLGISGHMDVVDAGDPTEWTSNPFELTERDGRLYGRGAADMKSGLAAMV IALIEIKHNRLLKKGTIRLMATFGEEVGEEGSQKIAEMGLMDDVDALVIGEPSGYDPAFS HKGSLDIRLTSKGQSAHSSMPEDGKNAIDPLIEILHAANHHFRDSAVENELLGPLTFHTT IFKGGNQVNSIPATAEAEINARTIPNFTNQQVIADLQKLVDQQNDAGAQVKLEAYMTQDA VETTGKSRLMELIQRVGSEFRGAPIKPGVIPAVTDASNLLRGKDESFPFAIWGPTGDGVH QVDEYVEKDLYLNFIKMYITVFTQYLTAQKD >gi|269838491|gb|ACXB01000020.1| GENE 8 6823 - 6966 62 47 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MHHIPEINPLEGLSCKLTSISDKMHSINDEDVFTKMCTQGGIKWTLN >gi|269838491|gb|ACXB01000020.1| GENE 9 7096 - 8556 1181 486 aa, chain - ## HITS:1 COG:BS_katA KEGG:ns NR:ns ## COG: BS_katA COG0753 # Protein_GI_number: 16077947 # Func_class: P Inorganic ion transport and metabolism # Function: Catalase # Organism: Bacillus subtilis # 2 479 3 481 483 561 58.0 1e-160 MSEKLTTEAGQPWANNQHTQTAGNRGPVLMQDYNLLEKLAHFDRERIPERVVHAKGAGAK GYFKLENDMSSYTKADLFNGVGKQTPLIVRFSQVAGEKGYPDTVRDVRGFAVKFYTQDGN YDIVGNNTPVFFVNDPLKFPDFIHSQKRDPQTNRRTQDMQWDFWAHSPESLHQVTYLMGD RGLPASYRTMNGYGSHTFKWVNQKGEAFWVKYHFISDQGVKNMMNEAAAEATVKDTDYLQ DDLYDAIAQGENPSWTLYVQILPYEAGLHYKWDIFDVTKVVSHKDYPLIKVGKMVLNENP TNNFTDVEEAAMSPANLVPGIEASPDKLLQGRLFSYKDTQRYRLGANFEDLPINRPVVPV HNYERDGAMKATQGPEVNYEPNSFDGPVEDRDASIKPFKVDGEALAQPYEYQVDYKTQAG DLYRLMSSAEKDRLIDTIKGALGQVKTDEIKRLEISQFYDADHDYGTRVARALGMDINKI VGEAER >gi|269838491|gb|ACXB01000020.1| GENE 10 8740 - 9516 517 258 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|270291401|ref|ZP_06197623.1| ## NR: gi|270291401|ref|ZP_06197623.1| ABC transporter subunit PenK [Pediococcus acidilactici 7_4] # 1 258 1 258 258 466 100.0 1e-130 MKLELRQWIRKQRMFLILLIAALMGIVAPLSAYYSDQLIEKFGGGSAASIQLPSPTWDSL MTSYFQSTEQVVLFIMAYLVADACTLGKNPAQQLFYLTRAKKAGPIYFPKMAAGLICVVL GMVMGAGWAVYVDWAFFSSTIRFDLVWPSLLLQALGIVTSVVLASTIAIYSGAPFLAAGV IEIGVLISSLFSQLKGFMKWSPTNLLNPTNWLIHPVSWTDLWRPLVLIGILIVGCLILIM AKSLRNQHAVRRVEAIAG >gi|269838491|gb|ACXB01000020.1| GENE 11 9513 - 10409 935 298 aa, chain - ## HITS:1 COG:BH0290 KEGG:ns NR:ns ## COG: BH0290 COG1131 # Protein_GI_number: 15612853 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Bacillus halodurans # 5 249 3 266 301 130 34.0 3e-30 MGNLVEIHDLTVRFKDFAALKKVNGKITNRPGVVGLIGPNGAGKTTLIHAIFGQEPVEHG QILIDQTAKLAYCPDTPEFEKYLTAREILQQSLRLDNQRINEKQILTALQQVGLVEHQNR LVGGFSRGTKQRLGIAAANILKPQLLFLDEPTSALDPFGRQAMLGLINEIAQTTTVVISS HLLNDIQQIAERLLVLNRGEMIFSGALTDFIAGTDDSVEILVKSVNAKDRVVAALQQCQI VVKEIQQHQIEFPAQDFEKGLGELSRLADDVVMINRSSQDLNHAFERWIHAKDKEKAK >gi|269838491|gb|ACXB01000020.1| GENE 12 10411 - 10605 261 64 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MAYLKIIVPLILVGGIYLFWTINDICRISRTHYLPKWGWIVVTLLAIPVGGIAYYLLERR EGSW >gi|269838491|gb|ACXB01000020.1| GENE 13 10933 - 11451 675 172 aa, chain - ## HITS:1 COG:BS_apt KEGG:ns NR:ns ## COG: BS_apt COG0503 # Protein_GI_number: 16079815 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Bacillus subtilis # 3 172 1 170 170 234 67.0 4e-62 MALDLHDYIASIPDFPEKGVIFRDISPLMGNGEAFREATNQIIDFAKEKKVEMVVGPEAR GFIVGCPVAYALGVGFAPARKKGKLPTETVKASYGLEYGKSSLYLEKSAIKPGQRVLITD DLLATGGTIAATIKLVEQLGGVVVGTAFLIELKDLHGREKIRDYDMLSLMEY >gi|269838491|gb|ACXB01000020.1| GENE 14 11452 - 13773 2079 773 aa, chain - ## HITS:1 COG:L0259_1 KEGG:ns NR:ns ## COG: L0259_1 COG0608 # Protein_GI_number: 15672614 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-specific exonuclease # Organism: Lactococcus lactis # 1 562 1 554 558 525 47.0 1e-148 MKDSRFNWQVPSLPDVDIAELAKATQLDPIIVRILVARGFRTADEMTNFLAMDQSVVHDP FLLHDMQKAVERIMSAIEANEKILVYGDYDADGVTSTTIMYETLAQLGADVNYFVPNRFK DGYGPNLAEYQHFINNEQVQLIVTVDNGVAGNEAINYAQEHGVDVVVTDHHEMPDQLPNA YAIVHPRHPEGEYPFGDLSGVGVAFKVACALLEEVPEEFLDLYAIGTIADLVSMTDENRL LVKLGLQLIPETSRIGLQKLIAVAGVETSQIDEETIGFTVAPRINAVGRLGDASQAVKLL TTFDEEQATAIAKDINATNTKRQGLVNEIYEVAAEIAKDEGHRDLQTLVISGHDWHQGVL GIVASRLVELTNKPTIVLSDQNQDGVYKGSGRSVANLNLFEALNPAREHFEGFGGHHMAI GITVKEANLPVLADQLEKAAKQAQLDFRQRPQLNLDATVAISELSTDLVTKIKQLGPFGM DNPVPKLAITNVRVTDVKAIGQNQAHLKFTANQAGQQLAAIAFQRGEIADKLSHLSNTID LAGTLGINEWRGNVTLQLMTEDLKINGLQVVDQRTTNLAKNLFRDEQQYIFFNPKLLSLI EKQNLGRQLYLYDSPAIQAHQAVVLVDCPPSLKLLRQALQKWQPTQITTYFFHQTDYYAS GMPSRTEFATVFAAVKRQPLTKAALLQLGKQLKIDQEKVNFMVKVFFELNFVKMEQGKLL INDEVQTHQLSEAPIYQKRLDLIQTQEKLLYSNGDQLATMLTQLLNVENEGVS >gi|269838491|gb|ACXB01000020.1| GENE 15 13791 - 14576 666 261 aa, chain - ## HITS:1 COG:BS_yqjQ KEGG:ns NR:ns ## COG: BS_yqjQ COG0300 # Protein_GI_number: 16079435 # Func_class: R General function prediction only # Function: Short-chain dehydrogenases of various substrate specificities # Organism: Bacillus subtilis # 6 260 11 259 259 168 36.0 8e-42 MKTAVITGAGSGLGRQIAILNCPYYDNLVLLGRNSDRLKQTAQDCFKCGARQVFTLSCDL TQEAQIEATGRWIRSHLGSVDLLVNNAGLGYFKTLLNQDFSEIDRTLSTDLAGTIKLTRA LLPLMVDHVGEAADIVNVASIAGKVATAKTTTYAAAKFGLVGFSNALRLELKRRNVRVHT INPGPMDTNFFNIADPSGKYLKGVQNFVISSDRVAWLTRRAIEQNLREVNVPKVMALGAV FYQIFPRLGDGLVNSPIINRK >gi|269838491|gb|ACXB01000020.1| GENE 16 14635 - 15627 710 330 aa, chain - ## HITS:1 COG:BS_yqjK KEGG:ns NR:ns ## COG: BS_yqjK COG1234 # Protein_GI_number: 16079441 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily III # Organism: Bacillus subtilis # 23 328 1 305 307 351 55.0 1e-96 MDASDTIKLSKKWMLRQCIGESMQLEFLGTGAGSPGRFRNVTSVALKLLDESNEVWLFDC GEATQHQILKTNIRPRKIDKIFISHLHGDHIFGLPGFLSSRSNQGGDSELTIYGPAGIKD FVMTALRISETKLAYRIRFVEITKGGKLFEDANYVVEVAELDHRIKSYGFRVREKDHPGE LLVDKLKEMAIPAGPIYGEIKQGKQVTLPDGKVIDGKDFIGKPQPGRVVTILGDTRQTAN IEKLAYHADVLVHESTFGKQEGSLARKYYHSTNMQAARIAQKCRVKKLLLTHISARYTGK LAKQLEKDACTIFANTKVVQDFDEIDVPLP >gi|269838491|gb|ACXB01000020.1| GENE 17 15692 - 15994 298 100 aa, chain + ## HITS:1 COG:no KEGG:PEPE_1133 NR:ns ## KEGG: PEPE_1133 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 100 1 96 96 66 42.0 3e-10 MNLSNFIKSTVELHSNLILKGEQQKAVSIITKLTLTNDGQTILLHVANRPSSHSGLTLGQ LRAQTRLAQPQAKLWLVNPTSRLTSPLFGYYLRKQFLILK >gi|269838491|gb|ACXB01000020.1| GENE 18 16062 - 17357 1393 431 aa, chain - ## HITS:1 COG:lin1572 KEGG:ns NR:ns ## COG: lin1572 COG0536 # Protein_GI_number: 16800640 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Listeria innocua # 1 431 1 429 429 478 60.0 1e-135 MFVDQVKINIKAGNGGNGIVAFRREKYVPNGGPAGGDGGRGGDVILKVDPGLRTLMDFRY RHKFKAESGKNGMNKQMTGRSAEDLVIMVPGGTIVRDLTTGRVIGDLTENGQELVVAKGG RGGRGNMHFANPRNPAPEIAENGEPGEELELQLELKVLADVGLLGFPSVGKSTLLSVVTS AKPKIAEYHFTTLVPNLGMVQLDDGRDFVIADIPGLIEGASQGVGLGFEFLRHVERTRVL LHLVDMSGLTEADPFTNFEQINAELEKYNPDLIKRRQIIVPTKMDLPGADEQLAEFEKKV RADERYRDFEIFPISSITHEGLSKLISRTADVLESTPQPTVVEDNSADSTDKTYEFNADK DFEIDNEDGVWVIKGAKIEKLFKMTDTTHDESLLRFARQMRGMGIDDELRRLGARNGDSV QILDFVFEFVE >gi|269838491|gb|ACXB01000020.1| GENE 19 17397 - 19181 1264 594 aa, chain - ## HITS:1 COG:lin1197 KEGG:ns NR:ns ## COG: lin1197 COG0322 # Protein_GI_number: 16800266 # Func_class: L Replication, recombination and repair # Function: Nuclease subunit of the excinuclease complex # Organism: Listeria innocua # 1 591 1 592 603 634 52.0 0 MASEHIEHKLALLPDKPGCYQMKNLNSQIIYVGKAKNLKNRVRSYFKSSHEGKTAKLVSE IADFDYIVTASDKEAFLLEITLIKKYQPYYNIKLKKGTGYPYIKITNEKDPRMQIVSNVR RDGGYYFGPYPNVYAAEETLHFLEKVYPLRRCNGYQGRPCLYYHMGQCLGACFKEVPKEE YDQQIAKIKSFLRGNVAKVKKSLQAKMQQASEAMEFERAAEIRDQIHYIEVTVEKQRIIS NDRTPRDLFNFYLDKGWLSIQIFFIRQSRLMKREKRLFPIASDVADEFSSFILQFYNNKN KVLPNEILVPEGLDNQIISEILGVPVRTPKRGEKRDLMNLARENAQITLEEKFRLLELDE SKTVGAMKEITDALGIPEGHRIEAFDHSHIQGADSVSAMVVFTDGKPDKKMYRKFKLNTV DHADEAASTREVIRRRYVRLLKEHQSLPDLILMDGGDVQLNAARDVLVNELSLHIPVAGM VKNDKHKTADLIFGDQDQRVQLDPKSQGFYLVQRIQDEVHRFAITFHRQMHAKNSLSSQL DSINGVGPKTRNKLLREFGSLNKIRDAKIEEIEALGISAKVAKTIKISLSAVKR >gi|269838491|gb|ACXB01000020.1| GENE 20 19347 - 20090 546 247 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 5 247 1 245 245 214 42 1e-54 MTKTIFKIENLTKSFAQNVILKDVSAEVKEGEVISVIGPSGAGKSTFLRCLTLLERPTAG AVVFEGRNLVEKSLREIEEVRQKVGMVFQNFNLFPNLTVLENITLAPRRVKEIPGEEARG QAQKLLEKVGLADKADAYPGNLSGGQKQRVAIARALAMEPAVMLFDEPASALDPEMVGEV LTVMRDLAQSGMTMVVVTHEMQFAKSVSDQIWFMDAANIQEKGTPDSFFAQPQTSRAQDF LSKINLQ >gi|269838491|gb|ACXB01000020.1| GENE 21 20090 - 21559 1130 489 aa, chain - ## HITS:1 COG:lin2352_2 KEGG:ns NR:ns ## COG: lin2352_2 COG0765 # Protein_GI_number: 16801415 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Listeria innocua # 286 485 8 208 215 209 52.0 8e-54 MRKEKTFFNWLFIIFSLCLISTGVDIADTVHATTKDPTYQRIRERGYIVLGTSPDYAPYE FQTSSNGKSKDVGMDISVAKDIAHDLGVKLKIKNMDFDSLLVGLQTGKVDMVLSGMNPSA ARRKSVDFSNVYYQGGQSIIINQKDGHLFKDKNSFHQRKVAAQTGSIQYNLAKKQIKGAS VRGIEKGTDLILALQTNKVDGIVMEKPTAEAYAANNQGLKILNAHFKLNDDETSTAVALP KGSPVLKAKINQTIARIKKQKRLPEYLKTAGTYLKGNTVDTSMIHYWKYFALGVGYTILI SLVGVCFGSIIGALLALMRLSRHTSLRAIALAYVEFVRGTPLMVQLMLVYFGLGIVVNLP ALTAGMIAVSLNSAAYVAEVIRGGINSVDEGQVEAAQSLGLNYQDRLRFVVLPQALKNIW PALGNEFISLIKESSIVSIIGVTDLIYQLKIVQSDTYRGVAPILVAMVLYFVLTFSLSRL LKFYEGKFN >gi|269838491|gb|ACXB01000020.1| GENE 22 21738 - 21968 207 76 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MGLTVKRTTDLEKMLGQFTNPATTAEEKKKKDKFLAKNKDKKGQKNNHRYQLASFHEAIG NDGFLFLFKAVRVPFC >gi|269838491|gb|ACXB01000020.1| GENE 23 21936 - 22226 387 96 aa, chain - ## HITS:1 COG:lin2253 KEGG:ns NR:ns ## COG: lin2253 COG1694 # Protein_GI_number: 16801317 # Func_class: R General function prediction only # Function: Predicted pyrophosphatase # Organism: Listeria innocua # 1 95 1 95 105 118 58.0 3e-27 MEFNEYQKKANKTLLGNEQVLTNCALGLAGESGQVVNLVKNYTFRGADLDKEQLTKEMGD VLWYLSQVAQWADIPFEEVAQKNIKDLAKRYPHSFK >gi|269838491|gb|ACXB01000020.1| GENE 24 22229 - 22816 512 195 aa, chain - ## HITS:1 COG:lin1593 KEGG:ns NR:ns ## COG: lin1593 COG0218 # Protein_GI_number: 16800661 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Listeria innocua # 1 193 1 193 194 256 64.0 2e-68 MEVHNVELQISAVKPEQYPEQGYPEIALVGRSNVGKSSLTNTLINRKSYARTSSQPGKTQ TLNFYRVEDQLFFVDVPGYGYAKVSQKEREKWGRMIEKYLTSRKELKGVISLVDARHDPT DDDISMYQYLRYYDIPVLVVATKSDKIARGKWNQHESRIKKVLNFDQQDAFQMFSAQTKF GKDAIWQWIEDRMGD >gi|269838491|gb|ACXB01000020.1| GENE 25 22911 - 24167 279 418 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 [Bacillus selenitireducens MLS10] # 159 385 258 432 466 112 34 9e-24 MYDDQQTSDQIACSFCGKTQDQVKKIIAGPDVYICNECVDLCKEIIDEELASEKKPTEIT NIPTPAEIVDYLDQYVIGQEEAKKTLSVAVYNHYKRINKMAQADAKDDGPELQKSNISLI GPTGSGKTFLAQSLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDVEAAEH GIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPQQEFIQI NTTNILFIVGGAFDGIETIVKNRLGDKTIGFGTNASTSLDESKSLMQQVIPEDLLKFGLI PEFIGRLPILTALEKLTEEDLVRILTEPKNALVKQYKALLALDGVELKFTPQALHAIAEQ AISRNTGARGLRSIIENVMRDIMFEIPSRDNVAKVTVNKKTVVDGVEPEVELTNEQAS >gi|269838491|gb|ACXB01000020.1| GENE 26 24387 - 25703 1568 438 aa, chain - ## HITS:1 COG:SPy1896 KEGG:ns NR:ns ## COG: SPy1896 COG0544 # Protein_GI_number: 15675709 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) # Organism: Streptococcus pyogenes M1 GAS # 1 424 1 424 427 405 55.0 1e-112 MIAKWEKTGTNEGKLTFEVGTDMIKEGVDKAFQRTKKSLNVPGFRKGHVPRQIFNKLYGE EALYQDALNIVLPDAYSAAIKEAGIEPVDQPQVDVEKLEKGEPWVLSAIVTVKPEVKLGE YKGVKVIKQSTRVTSKEVDEEIEKKREQQAELVLKEGKPAEKGDTVTIDFDGSIDGVPFD GGKATNYDLELGSNSFIPGFEDQLIGHNTDDDVDVKVTFPEDYQAEELQGKEALFKVKIH EIKTKELPELDDEFAKDVDEDVDSLEELKAKTKDQIKERKIQAADEAKESEAIQAAVDNA EIKEIPEAMLREDVDRQVNQYLANMQQQGISPDMYFQLTGSSEDQLRQQLSEGAENRVKT TLVLEAIVEAEKIDPSDEELDAEYKSLAEQYNMEEKAVRSALTADMVKHDVAIKQAVDLI KDSAIEEPKSKAKKSAKK >gi|269838491|gb|ACXB01000020.1| GENE 27 25849 - 27036 1403 395 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 [marine gamma proteobacterium HTCC2080] # 1 393 1 405 407 545 66 1e-154 MAKEHYERTKPHVNIGTIGHVDHGKTTLTAAITKVLSEKGLAQASDYADIDAAPEEKERG ITINTAHVEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHI LLAHQVGVDYIVVFLNKTDLVDDDELVDLVEMEVRELLSEYDFPGDDVPVLRGSALKALE GDPEQEKVIMELMDTIDEYIPTPERSTDKPFLMPVEDVFTITGRGTVASGRIDRGEVKVG DEVEIIGLKDDVKKTTITGLEMFRKTLDVGEAGDNVGALLRGINRDEVVRGQVLAAPGSI QTHKKFKGEVYVLSKEEGGRHTPFFSNYRPQFYFHTTDVTGVIELPDNVEMVMPGDNVTF TVELIEPVAIEKGTKFTVREGGHTVGAGVVSEIDD >gi|269838491|gb|ACXB01000020.1| GENE 28 27219 - 28088 754 289 aa, chain - ## HITS:1 COG:no KEGG:PEPE_1144 NR:ns ## KEGG: PEPE_1144 # Name: not_defined # Def: BS_ysoA-like protein # Organism: P.pentosaceus # Pathway: not_defined # 8 283 4 282 288 224 43.0 2e-57 MKEIDEQLTQAKELWDDGKQAQAIQILEELDEKTPTTQVAELLNHFYVANQQYSEALQLV ANQSTNFLHHPGVFADYLGALIATNNFIVAWKTLASADQQMKTPAMVTRLEEAEGRYQED FPQSVRADERHFYHLGDRQLADQIKAIKQAYHLPQKNYIRAASFNLVDPYLNQLTRVSIL KDLVDLRVERELDFIWLDEKSYRVVPAQIDASRLRKELMRLIEQSADPVQAELLIQQAGL MYDLAFPFPERVFATATGWLAALQAQFLAGKEVKQFHDLNKIMNSIMGS >gi|269838491|gb|ACXB01000020.1| GENE 29 28088 - 29791 1604 567 aa, chain - ## HITS:1 COG:lin1473 KEGG:ns NR:ns ## COG: lin1473 COG0595 # Protein_GI_number: 16800541 # Func_class: R General function prediction only # Function: Predicted hydrolase of the metallo-beta-lactamase superfamily # Organism: Listeria innocua # 9 553 13 555 555 615 56.0 1e-176 MSDVIKIIPFGGVRENGKNMYAVEIHNDIYILDCGLKYPENELLGIDIVIPDFSYLVENK DRIVGVFLTHGHADAIGALPYFLKEIEVPVFGSEMTIALAKITVNDDPDLRKFKNFHVVD EKKEIDFGDVTVSFFKTTHTIPDSLGIVLDCDEGRIVYTGDFKFDQTATDGYATDFGRLA QIGTKKVIALLSDSANAENFERPSNETEIAASIGEIIKYHEGRVVVASVASNILRIQQVI DAAVQSGRKVVLTGHDLEKIVNTAIKLNKINIPDDDLIVPLNKLDKLAPEETIVLETGKL GEPIKALQKMASRRRGKLRIEQGDLVLIATNPSHAMETTFAKTKDMLYRAGAEVKSISDR ANANGHASRNDLQLMLNLIKPQFLIPIQGEYRLLAAHQELAEQVGMKPEQIFIVNKGDVL EYQDGEMFHGKGIEVGNTMIDGIGVGDIGNIVLRDRKILSEDGVFVAVVTIDRKKKIIIK EPKITSKGFVYVKASGDLIEESSKLVKKTVQANLDNKEFDWGHLKQDVRDKLGKYLYDQT KRRPVILPVIMEVNQHHKKAKKVSKKK >gi|269838491|gb|ACXB01000020.1| GENE 30 30251 - 30520 437 89 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116492907|ref|YP_804642.1| SSU ribosomal protein S15P [Pediococcus pentosaceus ATCC 25745] # 1 89 1 89 89 172 96 4e-42 MAISQAKKNEIIAKYARHEGDTGSAEVQIAVLTADINEINEHIRVHRKDFHSQRGLMKKI GHRRNLLAYLRKTDVQRYRELIKSLGLRR >gi|269838491|gb|ACXB01000020.1| GENE 31 30724 - 30978 376 84 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|116492908|ref|YP_804643.1| SSU ribosomal protein S20P [Pediococcus pentosaceus ATCC 25745] # 1 84 1 84 84 149 92 5e-35 MPVIKSAMKRVRTNEKAAARNRSQLSAMRTSIKAFEIAAKNNAENANELLNTAYSRIDRA KTKGLIKANNAGRKKSRLAKMLAK >gi|269838491|gb|ACXB01000020.1| GENE 32 31005 - 32024 975 339 aa, chain - ## HITS:1 COG:lin1516 KEGG:ns NR:ns ## COG: lin1516 COG1466 # Protein_GI_number: 16800584 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, delta subunit # Organism: Listeria innocua # 8 339 6 340 343 195 38.0 1e-49 MKLTDLKKDVAKGNLQPIYLIEGPDNYIQNAAKKILTALIPEDQQVMNVGTYDLENTDLG LLLDDAQSSPFFGDYRLVIANNPVFLTGEKTKVKFNLDGLINYLKQPEPTTILVFAAKYE KLDGRKKIVKDLKKQATVIDANPPKEADTRQLIQQFVNERQIQIASPAVEELILRTGNNL AQVINELEKLTVYAADSKHIDLEAVQKLVPKSLTQNVFDLIKVLMKGDVRQSIADYSVLL LNQEQPLRINAALVSQFRLLLQVKILTERGFSQGKLAQELKAHPYRIKLAMQAVRQFDMA SLKRAFLGLLDLEEQLKTTQRPPQELFELFLVKFKNGWQ >gi|269838491|gb|ACXB01000020.1| GENE 33 32021 - 34279 908 752 aa, chain - ## HITS:1 COG:L0317_2 KEGG:ns NR:ns ## COG: L0317_2 COG2333 # Protein_GI_number: 15673754 # Func_class: R General function prediction only # Function: Predicted hydrolase (metallo-beta-lactamase superfamily) # Organism: Lactococcus lactis # 483 728 20 267 282 180 37.0 1e-44 MESSSSLIWATVTIFLLAGYVFTRSIVFLVLLFVWFGRVCWLRQLFPVVQVVTLGLLFGW HFSHVSHFIGQHQKSYENVRIILNVHPDEVKIREDGISIRAFNNNFDHQGVQAFIPLESP KLQQSFQNNSQDLQLEVAGNLGPLAQPTNVNQFDFRRIMYGKKVYYNLNKTQLINVRQLP LKSYQAWMHHWRKKLLDRCQQFAEPLRSYCAGIILGEQTDFLKENSEKLRNLGIIHLFCI SGLHVFYFIKLIEKIGILLRIDRETLFTIQMVVLPVYFVLGGGSTSLFRAVTLVLIKLVA QRLRLNFRGGIEAWCIVLLINLWLNPFVLLQMGGQLSYLLSLVLISQSTTSSLKISFKLF LVEIPIILFSMYKIHLLTVLFNLLCVPLFSSLVIPAVLIAFCFPLTASVINQVIIGVEWG LQRLDQLPGLLLIGKPSRWLVMFLLMIALKIVSTDAQTLKKRLFKVYWLTWIATGVYFRL LPFGEVTFFDVGQGDSILIREPFNRSVTMVDTGGKLRFGSRQKQTSTIAKNSSINYLQSI GISKIDTLCLTHQDVDHIGEAKAVLQNLKVQQLLFPAGVEKTDNFRYQILPYLHQTRIVE VLKGAQVSRLPLQILYPERPGKGANEDSLVLEGKFGGKRILLTGDLDISGEQKLLQNPEL VGKVDIFKLGHHGSKTANSPELLSAISPKLTVVSAGRNNRYGHPNAEVIERLQRLRIPVV STQDYGMISYRYFFNGMGRWKVGIDKKGSIVQ >gi|269838491|gb|ACXB01000020.1| GENE 34 34269 - 34718 241 149 aa, chain - ## HITS:1 COG:SA1417 KEGG:ns NR:ns ## COG: SA1417 COG2131 # Protein_GI_number: 15927169 # Func_class: F Nucleotide transport and metabolism # Function: Deoxycytidylate deaminase # Organism: Staphylococcus aureus N315 # 1 138 11 148 153 191 63.0 3e-49 MTQALLLSLRSTCKRLSVGAIIVRDRRVIAGGYNGSVSGDVHCLDEGCYLVDGHCVRTIH AEMNAVLQCSKFGVATDGAEIYVTDFPCLQCTKMLLQTGIVKINYLRNYNNDPYAVALLK RKNVAVKQIKFTDEDLAKIDVKTLLKDGK >gi|269838491|gb|ACXB01000020.1| GENE 35 34766 - 35446 669 226 aa, chain - ## HITS:1 COG:BS_comEA KEGG:ns NR:ns ## COG: BS_comEA COG1555 # Protein_GI_number: 16079613 # Func_class: L Replication, recombination and repair # Function: DNA uptake protein and related DNA-binding proteins # Organism: Bacillus subtilis # 73 226 60 204 205 115 46.0 9e-26 MWEEIWEKYQKPIIIGSILMAAILLVVSLLRPKNNVQSPQESSEVMMAGSEVQSSSVTSN PSTDSVQKSAKKQKLMVDVKGAVKKPGVYEVKPGMRVVDGIELAGGLTESADRKNINMAL QLSDQQVVYIPIKGEIKDFDPKQLMGTAGNAGNESLASSSSAGELVNINTADKNALLTLN GIGDKKADQIISYREEQGGFKTIDDLKQVQGIGDKIFAGLKDSITV >gi|269838491|gb|ACXB01000020.1| GENE 36 35506 - 35988 306 160 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764798|ref|ZP_02171851.1| ribosomal protein S19 [Bacillus selenitireducens MLS10] # 8 156 10 158 164 122 38 7e-27 MTKALYAGSFDPVTNGHVDLIRRAARIFDELVVVVAINTNKQPLFSPQERVNLLTMAMQD LENVSFTTSKGLTVDTFKELNADVLVRGVRNAADLDFETQVAQMNQFLAEQVETVFLPAD PKWNFTSSSLIKEVVKMGGNIHGLVPEAVELQLKSRLKNK >gi|269838491|gb|ACXB01000020.1| GENE 37 36021 - 36575 434 184 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764797|ref|ZP_02171850.1| ribosomal protein L29 [Bacillus selenitireducens MLS10] # 1 184 13 196 199 171 47 1e-41 MRIISGDFGGRRLKAVPGMKTRPTTDKIKENVFNIIGPYFTGGAVLDMYAGSGGLAIEAV SRGMEQATLIDKQMAAIKTIRDNVQVTKHPEQFQIIKGDTKKVIHNLAKQAVSYNMVFFD PPYALQTIAQDIVSLMELDLLAKDVTIVCETSEEVELPDQIGWLAKTRKQRYGITKIVIY KAGS >gi|269838491|gb|ACXB01000020.1| GENE 38 36572 - 36835 303 87 aa, chain - ## HITS:1 COG:no KEGG:PEPE_1154 NR:ns ## KEGG: PEPE_1154 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 87 1 86 86 90 60.0 2e-17 MEITERQSIVIFFSHLKKVTALKKLGDINYLSKEMHYLILYVNRADAAETLKKIRSFNFV RTAYISPRADLRVNYDEDYTITEEDEQ >gi|269838491|gb|ACXB01000020.1| GENE 39 36836 - 38038 1034 400 aa, chain - ## HITS:1 COG:SP1067 KEGG:ns NR:ns ## COG: SP1067 COG0772 # Protein_GI_number: 15900936 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 19 398 9 400 409 234 37.0 2e-61 MQSIINWLPQKLKRRLPDLDLWVVFPYVLLSIFGIIMVYSASADYYIQNGISAKSYLLKQ AVWVAVGFVITLLVFLMNKKVFRNKKILMFAFVALFLASVYLIFFGPNTNGATGWIYIGS FGIQPAEYLKLFIILYLANILSLHQHRMELGDEISAKTTWSPAVIVFGLIVLNFLEHDLG GSTINAAIAIVLFLAAGKNYRQSVAIIFAGLAVFFGLLTTVASKIDVNTSNYMLQRLVGF AHPFELSKGAGNQLVNSYYALGNGGVFGVGLGNSIQKKGYLPEANTDFIMSVVAEELGLI MVIIIISVLFVIIFRAIILGTKSNRMYDTLICYGIATYLVVQTFFNVGGITGLIPITGVT FPFISYGGSSMIVLSATIGVLLNISASQKRSQRIEQREAK >gi|269838491|gb|ACXB01000020.1| GENE 40 38193 - 40037 2156 614 aa, chain - ## HITS:1 COG:SP0681 KEGG:ns NR:ns ## COG: SP0681 COG1217 # Protein_GI_number: 15900582 # Func_class: T Signal transduction mechanisms # Function: Predicted membrane GTPase involved in stress response # Organism: Streptococcus pneumoniae TIGR4 # 2 611 3 612 613 908 75.0 0 MKLRDDIRNIAIIAHVDHGKTTLVNELLKQSDTLDEHVQIEDRALDSNAIEKERGITILS KNTAVRYGDKQINILDTPGHADFGGEVERIMRMVDGVLLVVDAFEGTMPQTRFVLKKALE QHLTPIVVVNKIDRPGARPEEVVDEVLDLFIELGADEDQLEFPVVYASALNGTSSFSSDP AEQEHTMKPIFDTIVKTIPAPEDTSEQPLQFQVAMLDYNDFVGRIGIGRVFRGTIKVGDN VTVMKLDGSKKNFRVTKLFGYFGLKRLEIKEAKAGDLIAVSGMEDIFVGETVADAEHPEA LPVLRIDEPTLQMTFRTNDSPFAGREGKFVTSRQLEQRLKQELHTDVSLRVDDTDDPGAW VVSGRGELHLSILIEMLRREGYELQVSRPEVILKEVDGKMCEPFESVQIDTPDEYTGSVI DSLSQRKGEMKNMESTGNGQTRLTFLAPSRGLIGYSTEFLSMTRGYGIMNHTFQEYLPVI KNWNPGRRNGTLVSINSGKVTTYAIMAIQDRGVIFTDAGTEVYEGMIVGQNSRENDISVN ITRGRNQTNVRAAGSEDIAKVKAPLHMTLEESLEFLNEDEYCEVTPENIRLRKQILNTNE REKAAKKRKMAAKK >gi|269838491|gb|ACXB01000020.1| GENE 41 40115 - 40897 748 260 aa, chain - ## HITS:1 COG:L133367 KEGG:ns NR:ns ## COG: L133367 COG0483 # Protein_GI_number: 15672530 # Func_class: G Carbohydrate transport and metabolism # Function: Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family # Organism: Lactococcus lactis # 17 235 12 230 255 155 39.0 8e-38 MDITKTQLEQIDQQICDFLREDRQFILEQMQKHYAVGQKTGRRDLVTSLDKENQQRIIAY LEPLLQPAKILAEETEHQITDSTGLVWVIDPIDGTMNFVKQGEDFAVMVALYEDGHPILG YIYDVMRDRLLHGGPGLGVAYCNEMKLTSPENLPLAEGLVGLSGPMLIANKFNFQTIESQ SLGSRVLGSAGIEFSRVILGKQVGYVSTLKPWDFAAGNALATVLGLMVDRVDGSPLNMLK SGVVLVATKKAFATIMNIVK >gi|269838491|gb|ACXB01000020.1| GENE 42 40884 - 41180 339 98 aa, chain - ## HITS:1 COG:L133111 KEGG:ns NR:ns ## COG: L133111 COG4476 # Protein_GI_number: 15672529 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 3 90 1 88 93 71 37.0 3e-13 MGIKENFSYPLDERWNVQEITDVVDFFTKIEESYQKGVKKQTLKNAYDKFRQVVPNKSEE KRIYREFEQNSGMQPFQAVKQLRDEGVKIIKVTENGYH >gi|269838491|gb|ACXB01000020.1| GENE 43 41263 - 41817 648 184 aa, chain + ## HITS:1 COG:SP1456 KEGG:ns NR:ns ## COG: SP1456 COG0242 # Protein_GI_number: 15901306 # Func_class: J Translation, ribosomal structure and biogenesis # Function: N-formylmethionyl-tRNA deformylase # Organism: Streptococcus pneumoniae TIGR4 # 1 183 13 202 203 193 51.0 1e-49 MIKMNDITRDGNPVLRKRAEKLTFPLDPKYLKVADEMMEYLKNSQDPKIAQKYHLRAGVG LAAPQIGLSIQMASVLVPGPDDEIIFEETLVNPVIVSQSVQVAALDEGEGCLSVDKEVPG YVPRYDRITIRYQNVEGEEKTIKLRDYPAIVCQHEIDHLKGTLFYDHINKKDPFSIDDNA ILIG >gi|269838491|gb|ACXB01000020.1| GENE 44 41888 - 42346 424 152 aa, chain - ## HITS:1 COG:no KEGG:PEPE_1160 NR:ns ## KEGG: PEPE_1160 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 12 152 15 155 155 141 51.0 8e-33 MKLIILGLLLVLVVLALMVYIKRRRVSKAATIVRNSGETIVDEAMGFVAEQMRSQGFVLV TKRGTSVADVWGQAVVGFNYKIKLNDQGNFRDVGDRIDYWLTQYCQRKDLMEDQEPMLRV SDLWANKNILEVDVVYLINEQTKNYLKDLSKL >gi|269838491|gb|ACXB01000020.1| GENE 45 42499 - 42714 327 71 aa, chain + ## HITS:1 COG:no KEGG:PEPE_1161 NR:ns ## KEGG: PEPE_1161 # Name: not_defined # Def: RNA-binding protein # Organism: P.pentosaceus # Pathway: not_defined # 1 71 1 71 71 95 81.0 5e-19 MIFKIYYQESKKEMPRRENTRSLYIEADSQPEAIKRVEDHNPDFNLEQIEVLEGKALEYE QQGVNYKLVEY >gi|269838491|gb|ACXB01000020.1| GENE 46 42718 - 44394 1457 558 aa, chain + ## HITS:1 COG:SPy1876 KEGG:ns NR:ns ## COG: SPy1876 COG0595 # Protein_GI_number: 15675695 # Func_class: R General function prediction only # Function: Predicted hydrolase of the metallo-beta-lactamase superfamily # Organism: Streptococcus pyogenes M1 GAS # 1 556 1 555 560 764 66.0 0 MGKINIKNNETAVYAIGGLNEIGKNTYGIQFQDEIIVVDAGIKFPEDELLGIDYVIPDYQ FLVANQQKIKALVITHGHEDHIGGIPFLLQQINVPIYASPLAAALIRGKLEEHGLLKTTE IHEINEDTVIKFPKTSVSFFRTTHSIPDTLGVAVHTPSGVIVETGDFKFDLTPTTHQPPN LQKMAKLGDEGVLLLMSDSTNAERDEFTKSERWVGKSIRKIFEEVQGRIIFATFASNISR IQMAAEAALKHGRKIAVFGRSMEAALVNGRELGYLDIPDEALVNAEEIRHLPADKVLIMC TGSQGEPMAALSRIANGTHRQISIEPGDTVVFSSNPIPGNTISVNNVINELEEAGARVIH GKVNNIHTSGHGGQDEQKLMLRLMKPKYFMPIHGEYRMLQLHTELAHDCDIPFENSFIMS NGDVLALTKDSARRCGHFNAGDVYVDGNGIGDIGNVVLRDRQLLSEEGLVVVVATINLKT KMIESGPDLLSRGFVYMRESGELINEGRRRMFATIRQAMRNPHANEASINRAIIDDLQKF LYDQTERHPVIIPMLIMD >gi|269838491|gb|ACXB01000020.1| GENE 47 44609 - 46045 1429 478 aa, chain - ## HITS:1 COG:CAC2663 KEGG:ns NR:ns ## COG: CAC2663 COG0791 # Protein_GI_number: 15895921 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell wall-associated hydrolases (invasion-associated proteins) # Organism: Clostridium acetobutylicum # 375 477 158 254 255 89 47.0 1e-17 MVSKSKSNASKLLLAGVAGAGLLVAGGSQAVAHADSVKVQKNDTVWALSQKYGVSIKSIE SLNNINQNSHLIFVGQEINIPEKNNAEPKTSVSDKVKADSVTVKSGDSLSVIAQRYGVSV NALMQANHLTSSLILVGQQLNIPSGNTVSTHSTYVAPAAPASSAAKPQVQTPTSQATQSA ASNSAAVSSAVQSSSAASQTPSSAVTSSAASSVAPSSVAPSSVAPSSVATASSTQANSAA SHSYSKPASAASSASVATNANQAASSAAPQISKQQQAASSVAPSSAPAATNHVASSVAPS SAPAATNHVASSAAPSSAPATTNHVASSAAPSSAAPAASTNHVASSAAPSSAATSNVQNT GSVTGLATSLANNTIPYVWGGKTPAGFDCSGFVSYVFQHAAGISLPSYTVAMESYVNKES VSAAQPGDLLFWGTPGATYHVGIYLGNNQYASAPTFGQNVKVQTISSYFYPSFAGRVK >gi|269838491|gb|ACXB01000020.1| GENE 48 46407 - 48350 2348 647 aa, chain - ## HITS:1 COG:FN1441_3 KEGG:ns NR:ns ## COG: FN1441_3 COG1299 # Protein_GI_number: 19704773 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, fructose-specific IIC component # Organism: Fusobacterium nucleatum # 309 643 1 327 328 328 54.0 2e-89 MKIKDLLKPNLMILDLKADSKEAAINEMIDKYVAEGVVTDRAKYLKGILDREAESTTGIG DGIAMPHAKTDAVNQAAVLFAKSSQGVDFNALDGQPVHLFFMIAAPEGANNAHLQALAKL SSLLINPDLVAKLKKAESTDDVIKLFEEAEAAKDAEDAADTQDEAPATNAAPATEETSAT QKPFIVAVSACPNGIAHTYMAEAALKKAAKDKGIDIKVETNGSEGVKHRLTKEDIERADG VIVTADKKVEMARFNGKPLLNRPVIDGINKADELIEMVENHQASTFHASQADGDDAADES KGGFWNEVYKDLMNGISHMLPFVVGGGIIMAISFFIERYTSATSLWFTFPNDIGNYAFSF LIPILAGFIAQSIGDLPALMPGVVGGYMATQSAASIMHTNSVSGFIGGLIAGFAAGLIVN ALKKFFRFIPKSLEGLKPMLFYPIVSLLLVGALMFFIINPVFAAVNAWVTGVLEGMGTGN AVLLGAVLAGMMSIDMGGPFNKAAYAFAIAAFTSTKNGDLMAAVMVGGMVPPLATAIATT FWPKKFTEQEREAGISNWVLGISFITEGAIPFATADPLRVIGSSIVGSAIGGGLSQLWKV SVPAPHGGLWVIALADHKLFYVLSVLIGAVVAGFIMGIWKPRRTTND >gi|269838491|gb|ACXB01000020.1| GENE 49 48361 - 49272 824 303 aa, chain - ## HITS:1 COG:SP0876 KEGG:ns NR:ns ## COG: SP0876 COG1105 # Protein_GI_number: 15900759 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) # Organism: Streptococcus pneumoniae TIGR4 # 1 300 1 300 303 316 55.0 3e-86 MIYTVTLNPSIDYVISLDEMQVGLVNRLKSASKFPGGKGINVSRILNELDVENTALGFLG GFTGQFVADALTELKVHSDFVGIKEDTRINVKIHAQQETELNALGPNIDDEELSQFMAKF DQVGAGDVVIFSGSVPANLPQTLYDDIIKKIGQNGASFAVDTTGQGLLDTLDSHPLVVKP NNHELGDLFGVKLTSDDQIEEYGKKLIEMGAQNVMISMAGEGGMLVTEDQVFRSFAPKGT VVNSVGAGDSMLAGFVGELVKSHDKQRAFKQGLACGSATAFSLDIATKAKIDEVANAIEI FEK >gi|269838491|gb|ACXB01000020.1| GENE 50 49269 - 49727 326 152 aa, chain - ## HITS:1 COG:BH0826 KEGG:ns NR:ns ## COG: BH0826 COG1349 # Protein_GI_number: 15613389 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Bacillus halodurans # 1 131 98 227 251 117 45.0 9e-27 MDAGTSTASMIAYLAELKGLLVVTNGLSIASLLSDFDIKTYLVGGQLKNKTRALIGAEVV DRLRTFRFDRCFMGTNGIDRVQGLTTPDIQEAQIKSTAIEQSRDAYVLADCSKFDQTSFA RFADLQDVTIIADECPEWLKTDQQLNYLEVQK >gi|269838491|gb|ACXB01000020.1| GENE 51 49812 - 50018 290 68 aa, chain - ## HITS:1 COG:no KEGG:PEPE_1166 NR:ns ## KEGG: PEPE_1166 # Name: not_defined # Def: lactose transport regulator # Organism: P.pentosaceus # Pathway: not_defined # 1 68 1 68 249 90 70.0 1e-17 MLTELREKNILRMLKERQFVKVNEIMQENDASISTVRRDLKRLEAAGKLKRIYGGARLET NLQDETDF >gi|269838491|gb|ACXB01000020.1| GENE 52 50377 - 51429 1122 350 aa, chain - ## HITS:1 COG:lin1458 KEGG:ns NR:ns ## COG: lin1458 COG0628 # Protein_GI_number: 16800526 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Listeria innocua # 9 345 9 342 345 170 36.0 3e-42 MDVLVRIWQKKSVQLWTTLAALLLIVYLLRGFMSQILLIVIFSFVAHVGIKNIRKYLHVN QPLGTLIFYSVLLAFAAVVFSFTASMLYDQLKGIPALIGQAINSDAFNNKYFQGIINEIA KNTTAVKGSQHLAMSGLNQLGRIGIAAEHVMIALFLSLVFNLTYNHLREFGHAILHSRYQ GLFNLVYYLLRKYVLILGTVIETQLIICSINTGLMVIGLWIIGIPKLLLMAIIVFVLGLI PVAGVLISLIPLSIVAFSANGLVSVVEVLALVAVIHFFESYFLHPRLMAGATDLPVFVTF ITLIIGAKMIGTWGLIVGIPTVAFFIDLLGIKIKRRRPKNPKEAIEEEFE >gi|269838491|gb|ACXB01000020.1| GENE 53 51526 - 52500 862 324 aa, chain - ## HITS:1 COG:BS_prs KEGG:ns NR:ns ## COG: BS_prs COG0462 # Protein_GI_number: 16077119 # Func_class: F Nucleotide transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoribosylpyrophosphate synthetase # Organism: Bacillus subtilis # 7 320 8 316 317 339 55.0 5e-93 MESKAKRRMKIFSLNSNRALAEKIANEVGIPLGKATIKQFSDGEIQVNIEESIRGAEVYV IQSISDPINDSLMELLIMVDALRRASARQINVVIPYYGYSRQDRKARSREPITAKLIANL LEDDDITRVLTLDLHAPQIQGFFDVPVDHLAAAPLLASYFQEHNFDSENLVVVSPDHASV SRARNMAELLGTPIAIIDNRNEESAENLNEIPTEIIGDVKGKVALVIDDMIDTGTRLTIS AEALHNAGATEIYGAATHAIFSRNAPQILQASKLSKVIVTDSIRIGEEKRFEKLVELSVG PLLGNAIKMIYNNEPLAPLFKSKN >gi|269838491|gb|ACXB01000020.1| GENE 54 52567 - 55077 2390 836 aa, chain - ## HITS:1 COG:BS_yrrC KEGG:ns NR:ns ## COG: BS_yrrC COG0507 # Protein_GI_number: 16079801 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member # Organism: Bacillus subtilis # 30 761 16 759 798 585 44.0 1e-166 MAFEKLNLFGDEGSAAPPKKATSMNKMVELTGTVNAVFFESPTSLFKVVLIDVVDQDFDW KEPQIVVTGNMAEVQEGAKYQFKGKLVEHPKYGTQIQLSQASRLGPDTKEGLVEYFAGSQ FKGIGKKTAEKIVKQLGMDAIDVIKDNAQVLRDIGLSSAQADVIETVLAESNGMEKILIK LADLGISGKTADNVIAKYREDTLKIIEENPYQLANDIENIGFKRVDAIGQQLNFPVDFPG RLQSGILATIQEWCNSTGDTYMVAEIMLQRAQQLLGNEINAEKIAEQVLELGKQGRVVGE NGQIYLKWLYQAEEAIGYQLQHLLKNPPKVNEKAVDRAIKRAEEHLALEYDETQNNAIRM ALSHGITIITGGPGTGKTTIVKGLINSFAELHDLDLDPNANPDQDYPIQLAAPTGRAAKR LSEVTGVPAKTIHRLLGLNGNDDLHDEQIQELRGELLVVDEMSMVDTGLFNTLISAINAE MQVVLVGDKDQLPSVGPGQVFSDLIRSQKIPTISLTKIYRQEQDSSIIQMAHSIQNGEMP DDFTQNRPDKSFIKASAYQVVDAIDQIAERAVARGLSKNDLQVLAPMYRGAAGIDEINRH LQRVLNPPQTDHPKYLEANHQQFRIGDKVLQLVNAPENNIFNGDIGEITGIVTEKAGKGH AQLIVDYDGNEVTYGKNDLNQLTLAYCVSIHKSQGSEFPVVILPMVRQYYRMLQRNLLYT GLTRASDSIILLGEVEAYQRAVQNESANRQTGLVKRLNPEIAITEKPIAEKSEPKTTSEK SEAGEPQRKSILTKPEVTETFATSGDEPTLLTKQLVETGKIDPMIGMDGVTPRDFL >gi|269838491|gb|ACXB01000020.1| GENE 55 55077 - 55736 679 219 aa, chain - ## HITS:1 COG:no KEGG:PEPE_1170 NR:ns ## KEGG: PEPE_1170 # Name: not_defined # Def: TPR repeat-containing protein # Organism: P.pentosaceus # Pathway: not_defined # 6 217 3 214 216 269 72.0 4e-71 MTEKKENEENQNLVHELIQKIDQDPHNAQNYYALATVLVKQQSFDQAEELLVKARGLFSD QPSQDLLTYGLGNVYYATGLYERANATFQTVKDSQYRHDANLMIAQGYYAQSQYKLAFAF ALTALEQHQQDPETNELMGDINLAMGEAQAAQKYYDVALKNKNTAKLLFNRGVVEMTLTQ QPDNDYFAKAKQIDPEFFSKAKQRLVDIDKLLHSSKEAD >gi|269838491|gb|ACXB01000020.1| GENE 56 55746 - 56420 540 224 aa, chain - ## HITS:1 COG:SP0984 KEGG:ns NR:ns ## COG: SP0984 COG0406 # Protein_GI_number: 15900859 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Streptococcus pneumoniae TIGR4 # 3 213 2 204 206 144 42.0 1e-34 MTKLYFVRHGKTEWNLEGRYQGAKGDSPLLKESYAEIKQLAAFLAPQQFRHIYASPLRRA RVTATTLQHELDELQGHATPLTILSRLREFDLGVMEGMKFVDVEKKYAEEVDAFRNHPER YFPARIKGETFQHLIERMRPAILRICESNPGDDDQVIIVSHGAALNAIINALLEVPLPDL RKRGGLANTSTTILETRDQGKTYRLLEWNDTSYLTKKTDPTDVI >gi|269838491|gb|ACXB01000020.1| GENE 57 56625 - 57758 1255 377 aa, chain - ## HITS:1 COG:L52034 KEGG:ns NR:ns ## COG: L52034 COG0482 # Protein_GI_number: 15672819 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain # Organism: Lactococcus lactis # 5 376 15 383 384 525 71.0 1e-149 MTDNSKTRVVVGMSGGVDSSVVAYLLKKQGYDVVGVFMKNWDDTDENGYCTATEDYKDVA KVAAKIGIPYYSVNFEKEYWDRVFTYFLDEYKKGRTPNPDVICNNEIKFKAFLDYAISLG ADYVATGHYAQVERDENGHQHLLRATDSNKDQTYFLSQLSAEQLDRVMFPLGGMVKPEVR AIAKEAGLAVYDKKDSVGICFIGEKNFREFLSNYLPAKPGKMMTLDGEVKGEHAGLMYYT IGQRRGLGIGGGSKNNEPWFVVGKDLSKNILYVGQGFDNPHLYAASLDASDMHFVNRLGE ERGHDFRCTAKFRYRAKDVPVTVHFSDDFSKVTVDFDEPARAITPGQALVLYDGEECIGG GIIDAAYSESKQQLQYV >gi|269838491|gb|ACXB01000020.1| GENE 58 57885 - 58226 423 113 aa, chain - ## HITS:1 COG:no KEGG:PEPE_1173 NR:ns ## KEGG: PEPE_1173 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 113 1 113 113 171 76.0 6e-42 MAFTKEVTIAGDPHVYRLSENLKRYTLTDLGFTTKNNGTFILERSLDATSPYNQGIKLKI MIKPDFSAFKMSTVTANGMQKANIFKREQDQPLVEQYHFIIDQLLEREVLVQE >gi|269838491|gb|ACXB01000020.1| GENE 59 58239 - 59399 1044 386 aa, chain - ## HITS:1 COG:lin1548 KEGG:ns NR:ns ## COG: lin1548 COG1104 # Protein_GI_number: 16800616 # Func_class: E Amino acid transport and metabolism # Function: Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes # Organism: Listeria innocua # 3 380 4 379 382 356 47.0 5e-98 MKQVYLDNAATTPTAPEVVDVIADQLKNNWGNASSLHGFGRQARAQLDEARHVIAQSINA NDDEIIFTSGGTESNNTAITQVALRNRKLGKRVITTKIEHPSVLKPMAHLEEMGFDVVYL DVNEDGVISLDQFKEALNDQTILVSIMMGNNEVGSRMPIHEIGEILKDHQAVFHTDAVQA YGLLDIDVKRDHIDLLSTSAHKLNGPKMTGFLYKNEAVNFDSFVRGGEQEDKRRAGTENV ANLAGFAKAVSLLDEQTKADLQKRYAGFKQQIIQQLKDHDVDFAINGSLSPDNLQHVFNI WLKGMSTYVMQTNLDLAGVAISGGSACTAGSLEPSHVLTAMYGADSPHIGESIRISFGKN TTTEDVDYLCEQIIAIEERLKHLKQK >gi|269838491|gb|ACXB01000020.1| GENE 60 59396 - 60100 792 234 aa, chain - ## HITS:1 COG:L132777 KEGG:ns NR:ns ## COG: L132777 COG0775 # Protein_GI_number: 15673862 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside phosphorylase # Organism: Lactococcus lactis # 4 228 37 256 259 202 50.0 5e-52 MKYGVICAMEEEIKALKENLELTKQTDINGVIFYEGRIEDVEVVLVRSGIGKVEAGITAA ILITNFKVDALIHSGSAGGIGQGLAVGDVVLSAEVAYHDVDATAFGYAYGQLPEQDVARY AADSALIEKFKQAAQDTNLNVKTGLIVTGDQFIASQEKVQAILDHFPDALCCEMEGAAIG QVAHQFHKPFIVVRAMSDTGDDEAGVSFDEFIIEAGKRSANMLINLFKMEGKQA >gi|269838491|gb|ACXB01000020.1| GENE 61 60113 - 60364 187 83 aa, chain - ## HITS:1 COG:no KEGG:PEPE_1176 NR:ns ## KEGG: PEPE_1176 # Name: not_defined # Def: small membrane protein # Organism: P.pentosaceus # Pathway: not_defined # 1 83 1 86 86 71 54.0 7e-12 MDEKNQTRAEYQKKIHAQKASEETSANEDSKNESRLRTSREQRFSTDEIAEEKSRALAKK LNIAIALLAVGIVLVFLVLFFIG >gi|269838491|gb|ACXB01000020.1| GENE 62 60373 - 60912 685 179 aa, chain - ## HITS:1 COG:lin2079 KEGG:ns NR:ns ## COG: lin2079 COG0494 # Protein_GI_number: 16801145 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Listeria innocua # 3 175 4 176 185 139 42.0 4e-33 MDLEEKVVKSVSRYKGEIVDVYQQTVELPDGTLANRDVVKHQDAIAILALTADGKALFEK QWRAPVAKPTIEIPAGKVEPGEDFLETAKRELNEETGYAAGKIEKMVGFYSAPGFTDEYM TVYKATDLKPVEDKLPQDQGENLKVFELSLSEALKAIEDGKIEDAKTVLAIYHWQATTK >gi|269838491|gb|ACXB01000020.1| GENE 63 60912 - 61124 207 70 aa, chain - ## HITS:1 COG:TM1874 KEGG:ns NR:ns ## COG: TM1874 COG1278 # Protein_GI_number: 15644617 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Thermotoga maritima # 4 63 3 62 66 68 60.0 3e-12 METGTVTSFDKTKGYGFIELDNGEKAFVHYSAVQSDDFKTLDENEVVQLMVAEGPKGLVA VKVFRKGEQD >gi|269838491|gb|ACXB01000020.1| GENE 64 61280 - 64081 2348 933 aa, chain - ## HITS:1 COG:SP1659 KEGG:ns NR:ns ## COG: SP1659 COG0060 # Protein_GI_number: 15901494 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Isoleucyl-tRNA synthetase # Organism: Streptococcus pneumoniae TIGR4 # 1 933 1 930 930 1189 61.0 0 MRVKDTLNLGKTKFKMRGNLPVNEKKREDVWFENKVYEQRQKLNEGKPSFVLHDGPPYAN GNIHMGHAMNKISKDIIVRYKSMSGFRSPYVPGWDTHGLPIEQQLTKEGHDRKKMSTAEF RKLCRDYALKQVDKQREDFKRLGVAAEWDNPYLTLQPSFEAEEIRTFAKMVELGLIYRGK KPVFWSWSSESAMAEAEVEYHDVTSPSAFYAERVSDGKGVLDQDTYFVVWTTTPWTIPAS EGITIDAGFDYSVVKPAGDDRKFVIATDRLSYATEQFGWQDVETIKTVRGQELENITALH PFDSDRKLVVMLGDFVTLDSGTGLVHTAPGFGEDDFRVGKEYGLDIFVPVDDRGYLTAEA GPDFEGVFYEDANEIALNKLKATNALLKQMDYTHSYPFDWRTKKPIIFRATPQWFASVDK IRDQILDALKDVKFLPEWGQKRLHNMIRDRGDWVISRQRVWGVPLPIFYAEDGTPIMNGE TIEHVAELFEKHGSDIWFEWDAKDLLPEGYTSEHSPNGTFTKETDIMDVWFDSGSSHQGV LAKRDYLKYPADLTLEGSDQYRGWFNSSLITSVAMSGHAPYKQVISQGFTLDGQGHKMSK SLGNTIVPADIIKKMGAEIIRLWVLSIDSSSDVRVSQDNFVKISDSYKKIRNTIRYLLAN TADFDPQANTVAYADLQPEDRYMLVRFNELVKEIRQDYDQYNFIEIYKALMNYIITDLSA FYLDFAKDVVYIEPEDSLKRRSMQTVFYQILVGLTKLMTPVLPHTTEEIWQFLSEPEEFV QLAEMPEVQELPGAADLLAKWQTVKKLRSHVLKALEEARDQKMIGKSMEAKATLYLDEAT KQVVDELNVDLRLILIVSQLEVRDLAEAPEDAASFDGQVAVQITPAEGEVCERCRMTKTD VGSDEHFPTLCASCAAIVTKYYPEAVTEGFEEK >gi|269838491|gb|ACXB01000020.1| GENE 65 64359 - 65087 704 242 aa, chain - ## HITS:1 COG:lin2128 KEGG:ns NR:ns ## COG: lin2128 COG3599 # Protein_GI_number: 16801194 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division initiation protein # Organism: Listeria innocua # 1 177 1 170 175 96 34.0 4e-20 MAIEPQDIQQKHFSNKMRGYNPDEVDEFLDDVAFEQRRLHDEIDSLRRQLAEAKSRVEYF DEMKESLNKSIMVAQDAADKVKISSKREAEFTAKEAQKEAEVVVKNAHKKADGYIGEAAG KAQKVIVATDDLKKQARSFRQKLEVLLESQLQMIKGRDWDNLLSSDELLTIGEIKEAMRN SGALDIIQENSVHSEEVGKIDPDTPAVEPKEDELKTVVVFPEDQPNEQGKPTDQGFHVNP KK >gi|269838491|gb|ACXB01000020.1| GENE 66 65111 - 65896 631 261 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|28378794|ref|NP_785686.1| cell division protein (putative) [Lactobacillus plantarum WCFS1] # 1 261 1 261 261 247 47 1e-64 MDNPIGQHFRPDEQPLIEEFSALVQEAKDQNRSILTNFLNPRQQHILTTLVNRDEELQLS FFGGFTNAENQRGLIYPQYFVPEKADFLVEIFEIDYPVKFAELEHRQILGTLANSGIQRD TFGDIVHYQDRWQVATNGELEKFFSNEITRIGRIKVRMQLATPSEILTPVNDWERTQVTL ASLRLDSIVATAFSISRHRAKELIEHRQVQLNWMIDEKADTIIARNDVISVRKYGRIKLV EVLGKTKKDKLKTQLDLIKTR >gi|269838491|gb|ACXB01000020.1| GENE 67 65889 - 66170 378 93 aa, chain - ## HITS:1 COG:BH2548 KEGG:ns NR:ns ## COG: BH2548 COG0762 # Protein_GI_number: 15615111 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Bacillus halodurans # 2 82 1 82 84 58 46.0 4e-09 MIALIFQLLHWAIQIYMMLIFIWVLMSWLPGAYQSAFGQWLTKICQPYMSWFRFIPPILG IDFSPILALLVLELCSNGLTYIEALLFGVTVYG >gi|269838491|gb|ACXB01000020.1| GENE 68 66246 - 67568 1378 440 aa, chain - ## HITS:1 COG:SP1666 KEGG:ns NR:ns ## COG: SP1666 COG0206 # Protein_GI_number: 15901501 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division GTPase # Organism: Streptococcus pneumoniae TIGR4 # 1 438 1 419 419 386 57.0 1e-107 MEFSMDDNKSKGANIKVIGVGGGGGNAVNRMISEGVKGVQFIVANTDVQALQASNADVKI QLGPKLTKGLGAGSTPEVGAKAAEESQQTIASALEGADMIFVTAGMGGGTGTGAAPMVAK IAKEQGALTVGVVTRPFTFEGPKRARFAAEGVSNLKEHVDTLIIIANNRLLDLVDKKTPM MEAFNEADNVLRQGVQGISDLITSPGYVNLDFADVKTVMQNQGSALMGIGSANGENRTEE ATKKAISSPLLETSIDGAEQVLLNITGGPDLSLFEAQAASQIVTEAANDDVNIIFGTSID EELKDGVRVTVIATGIDKKAGRASLHRQPARTSFENPSSVNTANTNNISANTEMRGAGST DNLNNNGAANNQNTQAANDPFGDWQLRQSNNSSTVRPSSPSDDEFKNVEKKEFNAFNDNN NTSSDDESLDTPPFFKRRRK >gi|269838491|gb|ACXB01000020.1| GENE 69 67592 - 68947 1256 451 aa, chain - ## HITS:1 COG:SPy1521 KEGG:ns NR:ns ## COG: SPy1521 COG0849 # Protein_GI_number: 15675421 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Actin-like ATPase involved in cell division # Organism: Streptococcus pyogenes M1 GAS # 1 451 1 454 454 393 46.0 1e-109 MDNSGIYVGLDIGTTSIKVIVAEYVKGQMNVIGVGREPSDGVNRGVIVDIDKAAIAIKRA IETAERKANIQIQDVVAGIPANLLRIEPVRGMIAISDSSREINNQDVIEVSNAASVHNLP PEQEVVDVLPDEFIVDGFDGIKDPRGMVGVRLEMNGGLITGPKTIIHNLKSAVRQAGLNL VDVVVNPLALGKTILNDGEQDFGTITLDLGAGQSTVAVIHDHHLKYTFVEQEGGQFVTKD ISVVLNTSLDNAEQIKQQYGYAVASEAGKETFPVNVVGQNEPVAVDEEYLSEIIEARLEQ ILTNIKKQLDKIGALDMPGGIVITGGGAALPGIEKLVERIFETNAKLYVPDQMGLRHPAF AQALAILNYEGRMSDVDILAKNAMVSSERTVSETPQEEVVDEKPKFKRAQATVKHPEPTQ ERSKPVERNSSPKATSNRFDGIKKWFSDFFD >gi|269838491|gb|ACXB01000020.1| GENE 70 69104 - 70210 737 368 aa, chain - ## HITS:1 COG:lin2140 KEGG:ns NR:ns ## COG: lin2140 COG1589 # Protein_GI_number: 16801206 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division septal protein # Organism: Listeria innocua # 72 284 32 244 270 123 32.0 5e-28 MPMKKKKDDENLTPWARYQKEHNQRNRTKKSSKLGGAKRGTAKKHPGKKRNKLTQKKVRQ PLHIGKGIKIGLLSLIGILILVTIYLCAPISRVQTIAVQGNKRVEKSDILKKVTVRKNDV IPATWFKERGDEVRLIHKLPDLKDAQISVSLLGNVKIKVRENAVMGYVVRNKYYYAVRQD GTVSKKSATQPDGDYPVFRQFKDNQVLKRFLSEYAKLPNEVQNDVAEVDYTATKKERHQL HFFMNDGNEVYAVLNTFAKKMKYYPEISASMKKRGIVDLQVGAYSYPRGQSDESSTSSTS TDPTEEGSQSSDSKKNSLSVGPSAKSKSADSSSSSSIDNVDYQTQQRRATQNSVQGFTAT DEVNPDGN >gi|269838491|gb|ACXB01000020.1| GENE 71 70217 - 71308 1028 363 aa, chain - ## HITS:1 COG:BS_murG KEGG:ns NR:ns ## COG: BS_murG COG0707 # Protein_GI_number: 16078586 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase # Organism: Bacillus subtilis # 1 362 1 363 363 372 52.0 1e-103 MRLMVSGGGTGGHIYPALALIKQVREVEPDSAVLYVGTHKGLENKIVPNAGIDFKTIKIQ GFKRSLSLENFKTVGLFLSSVVKARKMIKEFKPDVVLGTGGYVSGAVVFAASMMGIPTVI HEQNSVVGVTNKFLSKFVKKIAISFEAAADQFPKEKVVLTGNPRATEVVKITPQSLNQFG LKDDVPTVLIFGGSRGAEKINEVTMQSLNELVKRNYQTIFVTGRVHFDNLTKDVDLTPYK GKVAVLPYIADMPAMLPRMAVVVGRAGATSLAELTSLGIPSILIPSPYVTNDHQTKNARS LVDQHAAEMITENELTSKTLLTKLDDLMLDDQKRKQMAENTKKLGQPQAAEKLYAVLKSV IKA >gi|269838491|gb|ACXB01000020.1| GENE 72 71305 - 72699 1374 464 aa, chain - ## HITS:1 COG:SPy1525 KEGG:ns NR:ns ## COG: SPy1525 COG0771 # Protein_GI_number: 15675424 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramoylalanine-D-glutamate ligase # Organism: Streptococcus pyogenes M1 GAS # 7 455 4 448 452 390 49.0 1e-108 MKALAEIKDLANKNILVLGMAKSGVSAALLLRKLNAQVLVNDAKAEQPQELIEQLKKADV QMILGSHPKEILAQHHIELIVKNPGIPYTNPVLVAAKEQNVPIIAEPELAYRVMDSELIG VTGSNGKTTVTTMIQLMLDQQDHHAAYVAGNIGVPATTVVQKATANDRVVMELSSFMLAG IDQLHPHIAVVNNIFSNHLDWHKTRENYVNDKMRITENQTKDDYFVINWDNPEWQQLAQR TAAQVVPFSRQGLVENGAYAKDGQLYFKNERIMAADEIGVPGDQNVENALAAIAVAKIEG VANKHIKQVLQTFSGVKHRIQYVKTLAGRQFYNDSKATDIEATQVALKAFQRPIILIAGG LDRGDDYTRLVADLKPHVKEVIVNGQTAAHMQEAAQAAGVKVVKDSPRVKDSVAIAFEDS QPGDVILLSPAAASWDQYQTFEERGDEFITAVENLSKEKGDVTK >gi|269838491|gb|ACXB01000020.1| GENE 73 72712 - 73668 801 318 aa, chain - ## HITS:1 COG:lin2143 KEGG:ns NR:ns ## COG: lin2143 COG0472 # Protein_GI_number: 16801209 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase # Organism: Listeria innocua # 12 314 15 319 324 272 52.0 5e-73 MSNLLAGGLSAVITLIGMPSFIHYFRARNEGQMIREEGPKWHQKKSGTPTMGGLVFIVAI IVAAIISGLAFHLLTTNLVMLLFVLLEFGLIGCWDDSIKLLKRQNEGFKAWQKLLGQIIG GLIFYWVIKETGVALQLSIPGIGVWHLGGWYALFVIFWLVGFSNAVNLSDGLDGLVAGLS TIAFATYAIIAAKLNQPAVMLFCWAVVGSMLAFLVFNHKPAKVFMGDMGSLALGGALGAV SIILNQELSLLLVGIVFVLETLSVILQVLSFKLTGRRIFKMSPIHHHFEMLGWSEWKVDT VFWIVGLIGALITLISIW >gi|269838491|gb|ACXB01000020.1| GENE 74 73684 - 75849 1940 721 aa, chain - ## HITS:1 COG:lin2145 KEGG:ns NR:ns ## COG: lin2145 COG0768 # Protein_GI_number: 16801211 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Listeria innocua # 32 719 22 713 752 485 39.0 1e-136 MMNPKKRTTNTTETQHNRMMFGKWFLLIVAGVFIVIVGRFSYIAINKTIESVNLSSQAKR LYTDNKTIKAKRGSILDTNGNPIAEDTSTYSIYAVVSKKQVGPNRQPLYVTDKKKTARVL SKYLPISYKKALKTLSPSNPKTFQVEFGSAGNNISVATKEKIEKYKLTGINFVSSEARLY PNGVFASNLIGFAQQSQEKGSDTTQLSGVMGLEKMLNKQLTGTDGEKSLQKDKFGYQLPG SQVERPARDGSTVYTTLDQRLQTIMESTVSKVQSQAHPESIGATIMNAKTGAILATTQRP TFNASTKKGLSKAWNNGLVQDTYEPGSTMKIFTTAAAIDSGNFDPDEVYKSGTYEIDGQV VPDWKREGWGLISYEKGFALSSNVAMAHLEQKMGAKTWKKYIKRFHLLESTNSGLEGESK GSMQFDYPIEQADTAFGQAINVTAMQMLQGFTAIANNGQMVKPQFVKKVVNPNTGKTTYQ MKTKKVGRPVKAKTTKEVRKLMQDVVYKPYGIGSDFKLKGYRIAAKTGTAQVASNGNYAS GDDSYLYSVAAMAPAKNPKYIMYITMKKPNLPADKTATQLLDEIFGPVMKQALEQDKSTA NTDIDSSIEVPNVVGKDADDAVKELGKNNVAVVRLGNGSRILAQSESAGSKLLVGQRILL NTGGTVTMPDLTGWSKNDVIKLAKMFNIEVKYQGKGFVAGQSVAKGTTLQSGMTMTVTLK K >gi|269838491|gb|ACXB01000020.1| GENE 75 75846 - 76235 208 129 aa, chain - ## HITS:1 COG:no KEGG:PEPE_1190 NR:ns ## KEGG: PEPE_1190 # Name: not_defined # Def: cell division protein FtsL # Organism: P.pentosaceus # Pathway: not_defined # 1 129 1 128 128 163 78.0 2e-39 MAQNNDYAGRSRMINEPTSIAGVGKKELKKAREVVTARQLPLSKFEKFLITFCGFILVGL MFTVVSGKISLSNAQHKLEATQEKTTALSSKNTTMKQEVNQLSDQNRLNKVAKKAGLSLN SENIRNVNK >gi|269838491|gb|ACXB01000020.1| GENE 76 76242 - 77195 866 317 aa, chain - ## HITS:1 COG:lin2147 KEGG:ns NR:ns ## COG: lin2147 COG0275 # Protein_GI_number: 16801213 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis # Organism: Listeria innocua # 4 314 2 310 312 414 68.0 1e-115 MTEFKHTTVLLEETVAGLNIRKDGVYVDCTLGGGGHSQLILSKLGSTGHLYSFDQDQTAI DYNQDHLAPYIANQQVTFIKANFRNLKNELNQRGIDHVDGILYDLGVSSPQFDDAQRGFS YRYDAPLDMRMDQSQELTAQAVVNEWSYNDLVRIFFRYGEEKYAKQVARRIEKVREQHPI VTTGELVEIIKEAIPAAARRTGGHPAKRVFQAIRIAVNDELGALEESLEQALDLLNDNGR ISVITFQSLEDRLVKRMFKEKTEIGDLPAGLPVIPADKKPHFKLVNRKPIVPSEDELKEN RRAHSAKLRIIEKLQEG >gi|269838491|gb|ACXB01000020.1| GENE 77 77201 - 77632 430 143 aa, chain - ## HITS:1 COG:BS_yllB KEGG:ns NR:ns ## COG: BS_yllB COG2001 # Protein_GI_number: 16078577 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 143 1 143 143 186 58.0 1e-47 MFMGEFEHSLDNKGRLIIPSKFRDQLGEDFVITRGLDGCLFGYPLSEWKLVEEKLSQLPS NKKNNRAFVRFMFADAAQCNFDKQGRIIIPKKLRVHADLQKECVLVGVSNRIEIWNKARW ESAIEETEANFDDIAENLIDFGL >gi|269838491|gb|ACXB01000020.1| GENE 78 77877 - 78005 127 42 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MYNNKKKKKSGLQKVIMVFVWIMIILTLGSVLYAPLAQLLGA >gi|269838491|gb|ACXB01000020.1| GENE 79 78280 - 80631 2092 783 aa, chain - ## HITS:1 COG:lin1423 KEGG:ns NR:ns ## COG: lin1423 COG1674 # Protein_GI_number: 16800491 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: DNA segregation ATPase FtsK/SpoIIIE and related proteins # Organism: Listeria innocua # 36 776 46 753 762 623 47.0 1e-178 MAKAKKRRKTTRKRKKQQSLPTQNLLGLAYVLVALLGYFGRGFLGMLVANMFRIFVGSLS PLGFVLLFFYGLYLLFMGRELRFKGASDRVIGLSLTMIGYLLWVEYRFASGLNLESGFVA RTVEGIERSFLEQITTNDIGGGLLGAVFYSGTHFLLSEIGSAILAIVLMTVGLVILFGIP FDEVLSKTGLAILWITQRLIEGIRALTRGVLDWWEQLDFTISKPDVKRTPMERKPPEDGA TKQSVKSERTHVEPTTEEPVVDGTRGIEHPAEPKIEISTNNQRNPRKPKNQDKQSTANPE VGFESENKLNPNYRLPSSTLLTEIPQADQSSEYDSIKKNTQILQDTLNSFGVDASVESVK MGPSVTEYEIHPAIGVKVSKIVGLADDLALALAAKDIRIEAPIPGKSLVGIEVPNRTIST VSFRDIIESQPAHPDDPLKVPIGRDVSGNLVEANLVKMQHLLIAGATGSGKSVMINVIIT GLLMNARPDEVKLILIDPKKVELGIYNDIPHLLTPVVTDARKAAKALHKVVAEMQHRYDL FAEMNQRNIKSYNEFIEEQNAADGGKRPKMPYIVVIVDELADLMMVASNEVEDAIIRLAQ LARAAGIHMIIATQRPSVDVVTGLIKANVPSRIAFAVASGTDSRTIIDANGAEKLLGRGD MLFFPMGKNKPERVQGAFISDHDVKEIVDFVKQQQTAEYDDQLNVTDQEVAETEATDELD EYYPEAVELVTEMQRASTSMLQRKFRIGYNRAARIIDQLEENGVIGPQEGSKPRKVYRTK DEQ >gi|269838491|gb|ACXB01000020.1| GENE 80 80640 - 81158 486 172 aa, chain - ## HITS:1 COG:L161988 KEGG:ns NR:ns ## COG: L161988 COG0219 # Protein_GI_number: 15673131 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted rRNA methylase (SpoU class) # Organism: Lactococcus lactis # 3 172 2 169 169 223 61.0 1e-58 MTNHIVLFEPLMPANTGNIARTCAGTNAVLHLIKPLGFEISDKTLKRAGLDYWDSVKVVY HDNLPDFLATVKDRKRLFVVSKFASKAYTQADYTGAEDDVDNYFLFGKETTGLPETFMRQ YADCAIRIPQNDQHIRALNLSNSVAIVIYEVLRQQEFPNLEISHEYENDKLK >gi|269838491|gb|ACXB01000020.1| GENE 81 81328 - 82473 1129 381 aa, chain - ## HITS:1 COG:SP1505 KEGG:ns NR:ns ## COG: SP1505 COG0628 # Protein_GI_number: 15901352 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Streptococcus pneumoniae TIGR4 # 12 380 11 378 388 272 43.0 9e-73 MERKPKVPRWRTWFNQLVLNNRPVVSLIIVLLVLLILFMFSKVTWIFKPLEDFFKIVGFP IILAGVLYYLLNPLVDRLESRFKMKRVVSISIIFVGVAILIVAGVVAVIPVIREQTAALI QNWPDYWNAAIEKINGILNDPRLGDFQKQFHGVSSETIQSWSKKVTSVANNTVTSLGSVL SLITKVVIGIITMPFILFYLLRDGHDLPEYLAKAFPVRYRPQFLQILGEINTQLSQYIRG QLVVAFFVALMFFIGYLVIGLKFALTLAVAAGFLNLIPYLGSFLAMVPSIVIGAFISPVM LVKVLIVFAIEQTLEGRFISPLVLGSNLAIHPVTILVVLLASGQMFGLVGVIFGIPAYAV LKVLFIHGFELFKRRVGGYEQ >gi|269838491|gb|ACXB01000020.1| GENE 82 82491 - 82847 482 118 aa, chain - ## HITS:1 COG:lin0546 KEGG:ns NR:ns ## COG: lin0546 COG3731 # Protein_GI_number: 16799621 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system sorbitol-specific component IIA # Organism: Listeria innocua # 1 117 1 116 116 77 37.0 5e-15 MISAKVKSIGPEAIAKQDRLAILFDETATPDLKKIAVVQEIEKDNDQQFNLKAGSQIVIG EQTYDVKFVGSLVNQNLQSIGHTTLVFKEVPEQPLASAIYLSPDVFPDFKVGETIQYK >gi|269838491|gb|ACXB01000020.1| GENE 83 82979 - 83992 1004 337 aa, chain + ## HITS:1 COG:L11851 KEGG:ns NR:ns ## COG: L11851 COG2706 # Protein_GI_number: 15674136 # Func_class: G Carbohydrate transport and metabolism # Function: 3-carboxymuconate cyclase # Organism: Lactococcus lactis # 1 334 1 338 341 299 46.0 5e-81 MIETILLGTYTKQTSEGIYQVELDTTQKQLQNLQLVAKVENPTYLTVSQQQMLYAVDRYQ DQGGVSVTQLGDRSQVLQHLVQPGTPPAYVTVDEHRHLVFDANYHEGTVHAYQIQADGTL NLAHTFTNQGSGPRPEQSEAHPHYVDRTPDEHLVVCDLGCDEVFILDYDAATGFQTVSKY ETAPGFGPRHVVFNQQGNTAYLVGELASEVEVLNYHNGEFRHVQTLKTIPDDWEQHNGAA AIRITSDNRFVYVSNRGHDSIAVFAVNDDGTLELIQNCAIAGSFPRDFALNADERFLVCG NQTTNNLSLFERNSENGKLKLIQKDFAAPEVVCVYFK >gi|269838491|gb|ACXB01000020.1| GENE 84 84007 - 84636 785 209 aa, chain + ## HITS:1 COG:SPy0408 KEGG:ns NR:ns ## COG: SPy0408 COG3142 # Protein_GI_number: 15674545 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized protein involved in copper resistance # Organism: Streptococcus pyogenes M1 GAS # 1 209 1 209 209 196 46.0 2e-50 MLKEVPVENYTDIPRVIANGANRIELCDNLAVGGTTVSHGVMAESQKYASEHHIPVMAMI RPRGGNFVYNDIELKMMEADLFQAQQLGVDGAVFGALTPQGTIDEEAMEQLIGAAGGMQI TFHMAFDAIPVEHQAASIDWLIDHDVDRILTHGGPLTKPIEDTLSHLKETVKYAKGRIIV MPGGGVTVDNAAEIAEQLHVPELHGSKLV >gi|269838491|gb|ACXB01000020.1| GENE 85 84717 - 86066 1369 449 aa, chain - ## HITS:1 COG:SA0867 KEGG:ns NR:ns ## COG: SA0867 COG2239 # Protein_GI_number: 15926597 # Func_class: P Inorganic ion transport and metabolism # Function: Mg/Co/Ni transporter MgtE (contains CBS domain) # Organism: Staphylococcus aureus N315 # 5 446 13 458 461 340 41.0 3e-93 MDNTQAIFDKLKLELNKEDAKSFKEDFLDLHNYDQGRFFGELTGPERQLVYQYLSPDELA DAFDEIDDEPDLIAEYLDEMTPRYAAALLNGMYDDNEADVLGAVRNDKLHKLLSYMQPVD AARVRQLLKYEDKTAGALMTTEFISVAVDATVGSAMNQVKQEAQYAETISYIYVVNESNQ LIGVISVKDLIVNPDDVFIKRIMNTNVVSVLDNEDQVEIATQIRDYNFIAIPVVDKNNKM LGIITVDDIIDVIDEESAQDYSRLAGVGTEDLSENPWAAFKSRMPWLVTMLFLGLISAVV ISQFQGVLDRFGVLAVFITLITGTAGNAGTQSLAVAMRRLANDEDDNSGFKIILNEILTG LLTSVLTGLVIFVVVLLWQHNLMLGIIVGAAMWGAIFIANLVGSLIPIILEKLGQDPGVA SGPLISTVSDIISILIYFNIATICLANFH >gi|269838491|gb|ACXB01000020.1| GENE 86 86066 - 86971 297 301 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|238855152|ref|ZP_04645474.1| pseudouridine synthase, RluA family [Lactobacillus jensenii 269-3] # 9 289 12 283 287 119 32 8e-26 MKFSWQVQDESPQHLRTFLTRKRISRALLKSIKFNGGKILVNEQPKRTNEMVTAGDQVTV ELPPEPGNPHVVRSRQPIDVIYEDQDYLVVNKPPFLPTVQSARNQTDTLVNRVKNYYAER DYESQVVHVVTRLDQDTSGLVLFAKRRFAHTIMDQDLRQHRVQKYYLAMATGRFAQSHGL IDAPIERDPASFIKRRVASAGNGKPSKTEYWVLEQTDTDSLLKVQLHTGRTHQIRVHFSE LHHPLIGDPLYNETSFRSLQRQALHCFSLKFENVFRGKKIDVQAPIPNDMLEYWKKEKDK E >gi|269838491|gb|ACXB01000020.1| GENE 87 86961 - 87779 691 272 aa, chain - ## HITS:1 COG:L166614 KEGG:ns NR:ns ## COG: L166614 COG0061 # Protein_GI_number: 15672345 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted sugar kinase # Organism: Lactococcus lactis # 5 270 6 270 270 259 47.0 4e-69 MNKMKIAIYHSGDEHSIEVGQDLSQILRENHIALDDQDPTVVITIGGDGTLLSAIQKYLP IIDRVRFVGVHTGHLGFYTDWRDYELDDLVKALKSDGCSEIGYPLLNIDVIHTDGTKANY KAINESTLRKLNGTLVADVLIGDQLFERFRGDGLCISTPTGSTAYNRSVGGAIVHPQLEA MQMAEIASINNRVFRTVGAALILAPNETVTIRPLPSYHRTYNFTADRLGILDKNVQSVHY GIAVPKVKFLKYRHTGFWNRVRNSFIGQIDEI >gi|269838491|gb|ACXB01000020.1| GENE 88 87772 - 88386 665 204 aa, chain - ## HITS:1 COG:SPy1125 KEGG:ns NR:ns ## COG: SPy1125 COG2357 # Protein_GI_number: 15675105 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 1 198 1 198 223 226 60.0 3e-59 MIEDWNSFLLPYAQAVSELKVKLRAMRTQFLRSDEESPIEFVTGRVKPVDSIKEKMVRRQ ILEERIEQDMQDIAGVRVMCQFVEDIYQVVDLIRKRTDMTVIEERDYVENEKPSGYRSYH IVIEYPVQMLTGQKKVLAEIQVRTLEMNFWATIEHSLNYKFNGNFPVELRTRLQKASVKS YELDKEMSDIRKQILLAQREQRDE >gi|269838491|gb|ACXB01000020.1| GENE 89 88552 - 89142 517 196 aa, chain + ## HITS:1 COG:lin0963 KEGG:ns NR:ns ## COG: lin0963 COG2761 # Protein_GI_number: 16800032 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis # Organism: Listeria innocua # 2 165 17 184 272 64 29.0 1e-10 MLETYLFITPWGDECFKCEKETIRYFGRAEEKVDLKIFPVLNMQVVLNYMKHNQVKNGNY NDLFNRMYLTCLDYKAACYQGRAKGRQFLVAMQKSVIDKGESYSIELGSQLAQQVGLDLT MFEDDRRSEMVQKEFKHDQQLAHEMGAESIPAAVIFNVKDEEYGILMDHYDYQTLASVCK LKLASDDDNSFIPETL >gi|269838491|gb|ACXB01000020.1| GENE 90 89306 - 90355 710 349 aa, chain - ## HITS:1 COG:lin2293 KEGG:ns NR:ns ## COG: lin2293 COG4469 # Protein_GI_number: 16801357 # Func_class: R General function prediction only # Function: Competence protein # Organism: Listeria innocua # 22 181 30 189 371 91 33.0 2e-18 MKVALTETGKLVKAATAIAKGRYYCPQCHRPLRLYAGRYRNKYFAHVAENKPKLGSEESR RHKIGKTRLRDYFMKLGLEVQTEYYFPGIKRRGDVVVRAHGEIYVIEYQCSPITVSEIRQ RTYDYQQVSKHVYWIAGPQHCKEKGLLATMQKFGRYATRYGWWFLAWDALADNTPWLFYQ VYRQLFGKITYLKQPLLVNDSKISIQTKPNSLTNSTNLIREVRQLERHVLGTKIDQRYLK VQQLCYEKGHSLLGCPWVVHVPQNCTDFWHLSPPILNRICILLMLEEPNGVNGWISEEVD QEFWNYLVNHHWIVKREQRWQFRGRAVTWFPDASTKINALKGNLNELRK >gi|269838491|gb|ACXB01000020.1| GENE 91 90521 - 91243 817 240 aa, chain - ## HITS:1 COG:lin2294 KEGG:ns NR:ns ## COG: lin2294 COG4862 # Protein_GI_number: 16801358 # Func_class: O Posttranslational modification, protein turnover, chaperones; T Signal transduction mechanisms; N Cell motility # Function: Negative regulator of genetic competence, sporulation and motility # Organism: Listeria innocua # 1 238 1 217 217 84 27.0 2e-16 MEMERINEDTIRVKISSEDLSERGVTFLDLLDNHKEIENFFYSVLEEVDTDHQFANNDAV TFQVLPNRNGLELYISKNPANGMEEAMKSVAKNESPSNEELDEVSDFLKKKLAETDGQDA NMSNPSRDADPADFNSYGSDSDDTQTKVIKLNDFEGLPGIAAAISDVNGLDSVLYRYKDS YYLELVFYMSENTPELVKDNLALAYEYGDQTSITSEVLREHGKTIIDSAALELAKHYFKA >gi|269838491|gb|ACXB01000020.1| GENE 92 91492 - 91890 377 132 aa, chain - ## HITS:1 COG:lin2295 KEGG:ns NR:ns ## COG: lin2295 COG1393 # Protein_GI_number: 16801359 # Func_class: P Inorganic ion transport and metabolism # Function: Arsenate reductase and related proteins, glutaredoxin family # Organism: Listeria innocua # 1 131 1 131 131 183 72.0 8e-47 MVNLYTSPSCTSCRKAKAWLEEHGIQYKERKFFSEPLSAAEIKQVLQLTENGTEEIVSRR SKVFQELDVDLDDLSLKQLIDLIEKNPGLLRRPILVDDKRLQVGYNEDEIRRFLPRKVRQ LELARAQKIANL >gi|269838491|gb|ACXB01000020.1| GENE 93 92144 - 92881 678 245 aa, chain - ## HITS:1 COG:SPy0208 KEGG:ns NR:ns ## COG: SPy0208 COG1234 # Protein_GI_number: 15674406 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily III # Organism: Streptococcus pyogenes M1 GAS # 1 237 1 249 259 196 43.0 4e-50 MKITILGYYGGYPSKNTGTTGYLVQTKDTNLLLDAGSATLLELEKHLDPLDLDAVLLTHY HHDHTADLGVLQYRWQLNEKKKVATLPIYGHTEDPLNFGALTWPNASKGISYQVNDVIKV GGLKISFEKTQHPVAAFATRIEEVATGKVFTFTSDTRYFAQLADFAQNSDLLITDTNFLS DYQGVKWHLTTKETAQLFDNAHAQRLIISHLSPKIDPKIMLEETQHFSANPTKIELPATG KVIEL >gi|269838491|gb|ACXB01000020.1| GENE 94 93003 - 93458 412 151 aa, chain + ## HITS:1 COG:no KEGG:PEPE_1209 NR:ns ## KEGG: PEPE_1209 # Name: not_defined # Def: monooxygenase # Organism: P.pentosaceus # Pathway: not_defined # 3 150 2 160 161 104 40.0 9e-22 MFKTITTSFGSSAVLKSIQKKYSSRKLLLLANQNDNDSFQLVDFSNQPTIFKTPQRYTVL NSFDSIQKNSIFTYHFFELSTDALDAFDSQVDNLADKTATTLLNLKPLDQKPYNRAILEI SQNSAVSESLQALVSKYRNQNYYKTNYQVVG >gi|269838491|gb|ACXB01000020.1| GENE 95 93570 - 93731 94 53 aa, chain + ## HITS:1 COG:no KEGG:PEPE_1210 NR:ns ## KEGG: PEPE_1210 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 2 51 22 71 72 62 82.0 5e-09 MIVGIFFVYYLKVSANLSTFLRVILMAFAAYDFTDMFFSIKLLFEQRRRNKHK Prediction of potential genes in microbial genomes Time: Fri May 27 07:01:52 2011 Seq name: gi|269838490|gb|ACXB01000021.1| Pediococcus acidilactici 7_4 cont1.21, whole genome shotgun sequence Length of sequence - 4216 bp Number of predicted genes - 4, with homology - 3 Number of transcription units - 3, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 31 - 90 3.2 1 1 Tu 1 . + CDS 126 - 1460 1102 ## COG0477 Permeases of the major facilitator superfamily + Term 1481 - 1527 10.1 - Term 1469 - 1515 10.1 2 2 Tu 1 . - CDS 1530 - 2783 625 ## PROTEIN SUPPORTED gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 - Prom 2804 - 2863 3.8 - Term 2819 - 2856 5.3 3 3 Op 1 . - CDS 2890 - 3015 84 ## 4 3 Op 2 . - CDS 3087 - 4214 1151 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Predicted protein(s) >gi|269838490|gb|ACXB01000021.1| GENE 1 126 - 1460 1102 444 aa, chain + ## HITS:1 COG:SA2142 KEGG:ns NR:ns ## COG: SA2142 COG0477 # Protein_GI_number: 15927932 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Staphylococcus aureus N315 # 13 408 142 539 643 216 34.0 6e-56 MTPLSKKAYRWFVATLLLGTFTMSISQSSLSTAYPTFMHYFNLPASTVAWLTTGFMLIMS VVMPLSPWMLNNLNFKRMYISLLLIFIIGTFIIIFAPNFAMMMVGRLMEGFSVGVLFPTY QSVILQITPEEQRGATMGTVGLVMGSALAVGPILSGVILQIFNWQSIFIFFNCLLILVTL LAFKTIVSPVQQSHSELDFVSVLLSLGIIGLLYFINEINHQGWNLSLAIILVVSLGMLAW FVIRQFHLTNPLLHLEIMRIKNFDLGVLLTAFAYMSLITVTIVMPLYFQQVLHLSPFWSG LALVPAAALLSWLNRQSGKLADRIGFKPVMIIGIAIFIAGWSLMILNVFLESLVIAILAT MVVEAGNAFVMMPATTLGANSLPDHLIPHGSSIIATVRQVLGSTAVVIATVILGTDNFLG VFSCFLLLEICALFLAFKIKDVHK >gi|269838490|gb|ACXB01000021.1| GENE 2 1530 - 2783 625 417 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 [Phaeobacter gallaeciensis BS107] # 10 416 16 416 418 245 36 5e-65 MNIIDELDWRGAINQQTDEEGLKKLTEEKSIGLYAGIDPTGDSMHIGHLIPFMVLKRFQQ AGHKPVILIGGGTGSIGDPSGKKSERVLQSMEQVHHNEDALKKQLVKFFGTDNFRIVNNY DWLSKMSLLDFLRDYGKLFNVNTMLAKDIVASRLEVGISFTEFTYQILQSVDFLHLYKHE DVQLQIGGGDQWGNITAGTDLIHRMEGQDAKVYGLTIPLLLKADGTKFGKSEGGNVWLDP EKTTPYEFYQFWLNQDDRDVVKFLKYFTFLSHEEIERLAETVKTAPEKREAQRRLAEEVT EFVHGKAAVEEAQHISAALFSGDVKDLTASEIEQGFKNMPSVEVENKKENIVLWLVDTTK IEPSRRQAREDIKNGAIRINGEKITDVDAEIDPTSHFDGKFVIVRRGKKKYFLARVK >gi|269838490|gb|ACXB01000021.1| GENE 3 2890 - 3015 84 41 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGSAIRNLVGAANQTDPFGELHYGAFCLKERIISLSMLSGV >gi|269838490|gb|ACXB01000021.1| GENE 4 3087 - 4214 1151 375 aa, chain - ## HITS:1 COG:SPy1070 KEGG:ns NR:ns ## COG: SPy1070 COG0624 # Protein_GI_number: 15675062 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Streptococcus pyogenes M1 GAS # 1 375 93 469 469 359 51.0 6e-99 PAGEGWDTDPFAPVVKDGRIYARGVSDDKGPVLAAYLGLQIIKDLKLPVSKKVRLILGTD EESDWYGMDRYLATEQTPDFGFSPDAEFPIINGEKGIASFEVEVPAQSATGDFELQSFKG GIKDNMIPREAKAVVLAKADVDEAAWQAEYQEYLSENGLTGAMNVAGQQITFDLVGKSAH ALEPKAGLNAATFLADFLNRKVANDYLKLIAEKMHLDSRGHQLKINTVDPQMGDLTVSPD LFDYQAGQAGTVIINIRYPQSISTDEIIKNATAALADFEAKVALHGHAQEPHYVPADDPL VKTLLQIYTEHTGEAGQEMVIGGGTYGRILERGVAFGAQFPGRENVMHQANEYMAIEDIV NAAAIYAHAIYELAK Prediction of potential genes in microbial genomes Time: Fri May 27 07:02:31 2011 Seq name: gi|269838489|gb|ACXB01000022.1| Pediococcus acidilactici 7_4 cont1.22, whole genome shotgun sequence Length of sequence - 117536 bp Number of predicted genes - 113, with homology - 106 Number of transcription units - 61, operones - 27 average op.length - 2.9 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 271 279 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases - Prom 320 - 379 8.7 - Term 514 - 559 11.3 2 2 Op 1 . - CDS 650 - 1288 775 ## COG0702 Predicted nucleoside-diphosphate-sugar epimerases - Prom 1333 - 1392 4.8 3 2 Op 2 . - CDS 1398 - 1865 340 ## PEPE_0232 hypothetical protein - Prom 2001 - 2060 4.2 - Term 2049 - 2089 4.2 4 3 Tu 1 . - CDS 2100 - 3407 1616 ## COG1455 Phosphotransferase system cellobiose-specific component IIC - Prom 3574 - 3633 4.9 - Term 3768 - 3812 11.4 5 4 Tu 1 . - CDS 3820 - 4935 1262 ## COG3589 Uncharacterized conserved protein - Prom 4980 - 5039 3.7 + Prom 5002 - 5061 5.6 6 5 Tu 1 . + CDS 5090 - 6142 744 ## PEPE_0229 hypothetical protein + Term 6159 - 6216 5.1 + Prom 6147 - 6206 6.2 7 6 Tu 1 . + CDS 6283 - 7092 712 ## COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase + Term 7137 - 7195 11.1 - Term 7123 - 7182 15.1 8 7 Tu 1 . - CDS 7185 - 8006 722 ## PEPE_0227 hypothetical protein - Prom 8137 - 8196 7.3 + Prom 8062 - 8121 8.4 9 8 Tu 1 . + CDS 8171 - 8776 806 ## COG3560 Predicted oxidoreductase related to nitroreductase + Term 8819 - 8865 6.1 - Term 8866 - 8910 10.1 10 9 Op 1 25/0.000 - CDS 8967 - 10463 1554 ## COG0438 Glycosyltransferase 11 9 Op 2 . - CDS 10463 - 12061 1293 ## COG0438 Glycosyltransferase - Prom 12101 - 12160 8.3 - Term 12209 - 12259 14.3 12 10 Op 1 8/0.000 - CDS 12305 - 13189 742 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily - Prom 13278 - 13337 9.6 - Term 13310 - 13348 2.2 13 10 Op 2 4/0.000 - CDS 13371 - 14744 897 ## COG0477 Permeases of the major facilitator superfamily - Term 14988 - 15044 16.2 14 11 Op 1 . - CDS 15089 - 15400 186 ## COG0640 Predicted transcriptional regulators 15 11 Op 2 . - CDS 15450 - 15719 378 ## PROTEIN SUPPORTED gi|116492030|ref|YP_803765.1| SSU ribosomal protein S14P - Prom 15748 - 15807 6.1 - Term 15734 - 15769 3.3 16 12 Tu 1 . - CDS 15886 - 17043 943 ## COG1929 Glycerate kinase + Prom 17466 - 17525 5.3 17 13 Tu 1 . + CDS 17551 - 18471 1186 ## COG0039 Malate/lactate dehydrogenases + Term 18497 - 18538 5.3 - Term 18484 - 18526 4.0 18 14 Tu 1 . - CDS 18666 - 18971 311 ## PEPE_0217 hypothetical protein - Prom 19102 - 19161 8.0 + Prom 19067 - 19126 4.8 19 15 Tu 1 . + CDS 19152 - 20810 1227 ## COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases + Term 21029 - 21068 3.7 - Term 21015 - 21058 6.3 20 16 Op 1 . - CDS 21129 - 21293 125 ## - Prom 21328 - 21387 3.9 21 16 Op 2 . - CDS 21397 - 21486 79 ## - Prom 21619 - 21678 7.4 + Prom 21398 - 21457 5.2 22 17 Tu 1 . + CDS 21486 - 22340 825 ## COG4667 Predicted esterase of the alpha-beta hydrolase superfamily + Term 22359 - 22399 4.1 - Term 22347 - 22385 -0.1 23 18 Tu 1 . - CDS 22389 - 23318 532 ## COG4189 Predicted transcriptional regulator - Prom 23401 - 23460 5.1 + Prom 23459 - 23518 10.0 24 19 Op 1 1/0.071 + CDS 23539 - 24519 943 ## PROTEIN SUPPORTED gi|90020424|ref|YP_526251.1| ribosomal protein L11 methyltransferase 25 19 Op 2 . + CDS 24531 - 25781 1271 ## COG0477 Permeases of the major facilitator superfamily + Term 25808 - 25858 7.0 - Term 25952 - 25999 12.2 26 20 Op 1 . - CDS 26085 - 27383 1414 ## COG0213 Thymidine phosphorylase 27 20 Op 2 . - CDS 27406 - 28356 1120 ## COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain 28 20 Op 3 . - CDS 28369 - 29634 1323 ## COG2252 Permeases 29 20 Op 4 2/0.000 - CDS 29669 - 30943 1085 ## COG1972 Nucleoside permease 30 20 Op 5 9/0.000 - CDS 30957 - 31661 883 ## COG0813 Purine-nucleoside phosphorylase 31 20 Op 6 2/0.000 - CDS 31674 - 32864 1122 ## COG1015 Phosphopentomutase 32 20 Op 7 . - CDS 32903 - 33550 754 ## COG0274 Deoxyribose-phosphate aldolase - Prom 33583 - 33642 8.8 - Term 33741 - 33791 11.5 33 21 Tu 1 . - CDS 33974 - 34558 583 ## COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family - Prom 34592 - 34651 6.0 34 22 Tu 1 . - CDS 34677 - 35291 424 ## COG0637 Predicted phosphatase/phosphohexomutase - Term 35300 - 35339 4.1 35 23 Op 1 . - CDS 35351 - 36328 1145 ## COG2222 Predicted phosphosugar isomerases 36 23 Op 2 13/0.000 - CDS 36382 - 37215 712 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 37 23 Op 3 13/0.000 - CDS 37227 - 38009 617 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 38 23 Op 4 9/0.000 - CDS 38022 - 38492 503 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 39 23 Op 5 3/0.000 - CDS 38495 - 38896 372 ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA - Prom 38917 - 38976 2.1 - Term 38924 - 38966 10.1 40 23 Op 6 . - CDS 38992 - 41730 2235 ## COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain - Prom 41768 - 41827 4.6 - Term 42360 - 42410 14.6 41 24 Tu 1 . - CDS 42455 - 43297 819 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase - Prom 43330 - 43389 3.0 - Term 43431 - 43484 13.4 42 25 Op 1 . - CDS 43486 - 44289 747 ## COG1737 Transcriptional regulators 43 25 Op 2 . - CDS 44303 - 45394 802 ## COG2957 Peptidylarginine deiminase and related enzymes - Prom 45480 - 45539 7.1 - Term 45529 - 45574 1.1 44 26 Op 1 . - CDS 45589 - 46683 1128 ## COG2957 Peptidylarginine deiminase and related enzymes 45 26 Op 2 3/0.000 - CDS 46680 - 48071 1205 ## COG0531 Amino acid transporters 46 26 Op 3 . - CDS 48116 - 49147 884 ## COG0078 Ornithine carbamoyltransferase - Prom 49184 - 49243 6.8 + Prom 49287 - 49346 7.0 47 27 Op 1 . + CDS 49368 - 50417 450 ## PEPE_1599 AraC family transcriptional regulator 48 27 Op 2 . + CDS 50393 - 50539 160 ## + Term 50615 - 50675 1.1 - Term 50528 - 50573 8.7 49 28 Op 1 11/0.000 - CDS 50582 - 52078 1289 ## COG1070 Sugar (pentulose and hexulose) kinases - Prom 52250 - 52309 2.5 - Term 52234 - 52279 6.2 50 28 Op 2 . - CDS 52327 - 53670 1437 ## COG2115 Xylose isomerase 51 28 Op 3 . - CDS 53676 - 54833 1023 ## COG1940 Transcriptional regulator/sugar kinase 52 28 Op 4 . - CDS 54872 - 56251 510 ## PROTEIN SUPPORTED gi|90020673|ref|YP_526500.1| ribosomal protein L9 - Prom 56380 - 56439 6.9 + Prom 56407 - 56466 6.7 53 29 Op 1 1/0.071 + CDS 56489 - 56827 250 ## COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases 54 29 Op 2 . + CDS 56772 - 58769 1612 ## COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases + Term 58787 - 58852 17.5 - Term 58772 - 58837 16.1 55 30 Op 1 . - CDS 58843 - 59487 702 ## COG0702 Predicted nucleoside-diphosphate-sugar epimerases - Prom 59554 - 59613 3.3 - Term 59579 - 59617 3.0 56 30 Op 2 . - CDS 59632 - 61383 1684 ## COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] - Prom 61435 - 61494 5.8 - Term 61623 - 61653 0.4 57 31 Op 1 . - CDS 61718 - 62032 313 ## smi_0438 transcriptional regulator 58 31 Op 2 . - CDS 61944 - 62186 238 ## gi|227530301|ref|ZP_03960350.1| hypothetical protein HMPREF0549_1480 - Prom 62209 - 62268 7.6 + Prom 61974 - 62033 4.8 59 32 Tu 1 . + CDS 62186 - 62377 56 ## + Term 62546 - 62580 -1.0 - Term 62427 - 62471 5.3 60 33 Tu 1 . - CDS 62484 - 63386 784 ## gi|270291535|ref|ZP_06197756.1| conserved hypothetical protein - Prom 63423 - 63482 8.7 - Term 63554 - 63614 10.9 61 34 Op 1 1/0.071 - CDS 63650 - 64543 794 ## COG0191 Fructose/tagatose bisphosphate aldolase 62 34 Op 2 1/0.071 - CDS 64581 - 65444 467 ## COG0191 Fructose/tagatose bisphosphate aldolase 63 34 Op 3 7/0.000 - CDS 65458 - 66546 703 ## COG1299 Phosphotransferase system, fructose-specific IIC component 64 34 Op 4 8/0.000 - CDS 66551 - 66871 515 ## COG1445 Phosphotransferase system fructose-specific component IIB 65 34 Op 5 5/0.000 - CDS 66875 - 67351 409 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) 66 34 Op 6 . - CDS 67320 - 68702 368 ## COG3711 Transcriptional antiterminator - Prom 68900 - 68959 4.9 - Term 68908 - 68951 8.8 67 35 Op 1 9/0.000 - CDS 68974 - 69450 637 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 68 35 Op 2 4/0.000 - CDS 69422 - 69865 275 ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA 69 35 Op 3 . - CDS 69873 - 71549 1610 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 70 35 Op 4 . - CDS 71575 - 72288 669 ## COG0176 Transaldolase - Prom 72399 - 72458 9.2 + Prom 72312 - 72371 9.0 71 36 Tu 1 . + CDS 72462 - 73484 1002 ## COG1609 Transcriptional regulators + Term 73497 - 73545 9.3 - Term 73485 - 73533 9.3 72 37 Tu 1 . - CDS 73577 - 75250 936 ## COG3410 Uncharacterized conserved protein - Prom 75276 - 75335 4.0 - Term 75336 - 75371 3.1 73 38 Tu 1 . - CDS 75465 - 75941 487 ## gi|270291547|ref|ZP_06197768.1| predicted protein - Prom 75968 - 76027 2.0 74 39 Tu 1 . - CDS 76298 - 76447 228 ## Sterm_3699 PTS system, mannose/fructose/sorbose family, IIB subunit (EC:2.7.1.69) - Prom 76506 - 76565 9.8 - Term 76765 - 76803 -0.6 75 40 Tu 1 . - CDS 76822 - 77499 810 ## COG1285 Uncharacterized membrane protein - Prom 77541 - 77600 5.2 - Term 77558 - 77606 5.1 76 41 Op 1 3/0.000 - CDS 77616 - 78452 656 ## COG1737 Transcriptional regulators 77 41 Op 2 9/0.000 - CDS 78490 - 80466 2115 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific 78 41 Op 3 . - CDS 80479 - 81372 964 ## COG2103 Predicted sugar phosphate isomerase - Prom 81408 - 81467 7.6 + Prom 81530 - 81589 4.9 79 42 Tu 1 . + CDS 81636 - 82433 485 ## PEPE_0149 hypothetical protein + Prom 82435 - 82494 11.7 80 43 Tu 1 . + CDS 82546 - 83667 1117 ## PEPE_0148 hypothetical protein + Term 83811 - 83848 -0.4 - Term 83789 - 83846 8.1 81 44 Op 1 1/0.071 - CDS 83939 - 84115 303 ## COG4876 Uncharacterized protein conserved in bacteria 82 44 Op 2 . - CDS 84128 - 85021 990 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - Prom 85046 - 85105 8.3 + Prom 85013 - 85072 5.6 83 45 Tu 1 . + CDS 85130 - 86035 804 ## COG0598 Mg2+ and Co2+ transporters 84 46 Tu 1 . - CDS 86032 - 87942 1560 ## COG3855 Uncharacterized protein conserved in bacteria - Prom 87978 - 88037 13.6 85 47 Op 1 19/0.000 - CDS 88181 - 90061 1690 ## COG1299 Phosphotransferase system, fructose-specific IIC component 86 47 Op 2 . - CDS 90054 - 90998 730 ## COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) - Prom 91087 - 91146 7.6 + Prom 90931 - 90990 6.7 87 48 Tu 1 . + CDS 91076 - 91861 462 ## COG1737 Transcriptional regulators + Term 91862 - 91914 1.5 - Term 91847 - 91906 15.4 88 49 Tu 1 . - CDS 91928 - 93133 1155 ## COG2807 Cyanate permease - Prom 93162 - 93221 3.7 - Term 93236 - 93272 4.0 89 50 Op 1 . - CDS 93298 - 93426 255 ## 90 50 Op 2 . - CDS 93441 - 94112 548 ## LC705_00637 hypothetical protein 91 50 Op 3 1/0.071 - CDS 94131 - 95126 1242 ## COG3684 Tagatose-1,6-bisphosphate aldolase - Prom 95153 - 95212 8.3 92 51 Op 1 4/0.000 - CDS 95231 - 95749 698 ## COG0698 Ribose 5-phosphate isomerase RpiB 93 51 Op 2 2/0.000 - CDS 95768 - 96196 610 ## COG0698 Ribose 5-phosphate isomerase RpiB 94 51 Op 3 . - CDS 96214 - 96981 638 ## COG1349 Transcriptional regulators of sugar metabolism - Prom 97034 - 97093 7.5 + Prom 97082 - 97141 7.8 95 52 Op 1 13/0.000 + CDS 97213 - 97710 538 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) 96 52 Op 2 10/0.000 + CDS 97739 - 98041 453 ## COG3414 Phosphotransferase system, galactitol-specific IIB component + Term 98059 - 98099 2.5 + Prom 98139 - 98198 2.7 97 52 Op 3 . + CDS 98226 - 99641 1567 ## COG3775 Phosphotransferase system, galactitol-specific IIC component 98 52 Op 4 . + CDS 99667 - 99852 217 ## + Term 99890 - 99932 5.4 - Term 99878 - 99920 3.8 99 53 Op 1 . - CDS 99940 - 101055 573 ## COG4932 Predicted outer membrane protein 100 53 Op 2 . - CDS 101079 - 101243 236 ## PEPE_0127 hypothetical protein 101 53 Op 3 . - CDS 101246 - 102286 974 ## COG1215 Glycosyltransferases, probably involved in cell wall biogenesis 102 53 Op 4 . - CDS 102332 - 103339 603 ## COG1680 Beta-lactamase class C and other penicillin binding proteins - Term 104088 - 104142 16.1 103 54 Op 1 . - CDS 104159 - 104875 292 ## PEPE_0124 hypothetical protein 104 54 Op 2 . - CDS 104830 - 105606 493 ## PEPE_0124 hypothetical protein - Prom 105657 - 105716 2.9 + Prom 105545 - 105604 7.5 105 55 Tu 1 . + CDS 105688 - 107307 844 ## PEPE_0123 hypothetical protein + Term 107319 - 107369 11.4 - Term 107586 - 107648 10.7 106 56 Tu 1 . - CDS 107852 - 108100 324 ## - Prom 108131 - 108190 7.3 - Term 108412 - 108454 1.0 107 57 Tu 1 . - CDS 108630 - 108905 329 ## gi|270291576|ref|ZP_06197797.1| predicted protein - Prom 109074 - 109133 5.0 + Prom 109409 - 109468 4.3 108 58 Op 1 . + CDS 109490 - 110965 1162 ## LSA0113 hypothetical protein 109 58 Op 2 . + CDS 110996 - 113257 1847 ## gi|270291578|ref|ZP_06197799.1| predicted protein + Prom 113288 - 113347 4.6 110 59 Tu 1 . + CDS 113372 - 114187 1067 ## COG3546 Mn-containing catalase + Term 114234 - 114286 3.5 - Term 114217 - 114279 17.1 111 60 Tu 1 . - CDS 114293 - 114850 550 ## PEPE_0114 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24-like - Prom 114893 - 114952 5.1 - Term 115020 - 115071 10.1 112 61 Op 1 . - CDS 115123 - 116286 1006 ## COG0153 Galactokinase - Prom 116328 - 116387 3.6 113 61 Op 2 . - CDS 116389 - 117405 1006 ## COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) - Prom 117453 - 117512 4.8 Predicted protein(s) >gi|269838489|gb|ACXB01000022.1| GENE 1 1 - 271 279 90 aa, chain - ## HITS:1 COG:L59867 KEGG:ns NR:ns ## COG: L59867 COG0624 # Protein_GI_number: 15672824 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Lactococcus lactis # 3 89 4 94 472 102 56.0 2e-22 MNIDWKAEVEQRKDRMLERLMELLKIDSSRDVEHAEKDAPLGPGPKAALLKMLEFAEADG FTTKNVENVAGHVEYGDGKEILGILGHLDE >gi|269838489|gb|ACXB01000022.1| GENE 2 650 - 1288 775 212 aa, chain - ## HITS:1 COG:ECs1906 KEGG:ns NR:ns ## COG: ECs1906 COG0702 # Protein_GI_number: 15831160 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Predicted nucleoside-diphosphate-sugar epimerases # Organism: Escherichia coli O157:H7 # 1 209 8 217 220 205 50.0 6e-53 MTKKVLVLGAHGQIAQLAEKEFMEETDDELKLFLRNAKRLTPSNPDRETVIDGDAANVDQ LKDAMQGVDAVYANLAGNNIADQAKAVVEAMDATGVKRLVWISTLGIYDEVPGKFGEWNN STLGSYLTRYRSAADVIEASDLDYTVVRPAWLTNHDEIEYEFTQKGEDFKGTEVSRKSIA HVVVDLIQNNTEIKHSIGVNKPNTDGDKPNWY >gi|269838489|gb|ACXB01000022.1| GENE 3 1398 - 1865 340 155 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0232 NR:ns ## KEGG: PEPE_0232 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 155 1 152 152 200 60.0 1e-50 MSKHKQKLTSEQRTQRAQNAQKVIANARKPRLMIKDLPGWMQNAALNRFNWLRWLPFIPL LIVLLTAPMLQNEVPATLKATGGMINKNALFLVPFACLLGAYGCWIAIKSRRRADHVDGD VNRFALMEMETIIGDLLVILICTVISIWQVFVAFH >gi|269838489|gb|ACXB01000022.1| GENE 4 2100 - 3407 1616 435 aa, chain - ## HITS:1 COG:BS_ywbA KEGG:ns NR:ns ## COG: BS_ywbA COG1455 # Protein_GI_number: 16080890 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Bacillus subtilis # 7 428 5 435 444 402 51.0 1e-111 MGDNNKTNGFAEKLMPLASKVASSRHLVALRDGFALVMPLIIIGSVFMIISQFPIPAYLN MMTSLFGAGWQDTVGWATNATFSIIGMVAVIGISFELAKSYDGIDAISASMVSLAAFMLT IPLNVDKAGAVWVPLTQLGSMGLFEALLIGLFVTDAFVWMIHKDWQFKMPDTVPPAVGHA FSSLIPGFVIILGMWLLRLLVSFTDFKTIPNVITVIVSQPLNAVGGSIFGMLVAEFFVVF LWLFGIHGSNVVGGIMAPVWLGKMAENADAAKAHKALPNIVTQQFVDNFIHFGGAGETLA LAFMLMFLAKSENFRAIGKLTAIPGLFNINEPIIFGVPMVLNPVMAIPFVIVPLISVVTT YYAMKFGLVAKPLGIAVPWTTPPLISGYLATGKISGAVIQLVNLAIGGLVYYPFFKIADR QALQQEEAKRAEMNA >gi|269838489|gb|ACXB01000022.1| GENE 5 3820 - 4935 1262 371 aa, chain - ## HITS:1 COG:L176316 KEGG:ns NR:ns ## COG: L176316 COG3589 # Protein_GI_number: 15672155 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 1 361 1 361 364 434 54.0 1e-121 MGRLGISIYPDRMGIEETKEYIKLASKYGFQRIFTSFLQIKGDQDQVVARFKDLIEYGKS LGMDTMVDMNPKLFKQLGVSYDNLKFFHDIGAWAVRLDEGFTGMEEARMTHNPYGLKVEV NMSRGTHYIDQIMDYAPDRQNLIGSHNFYPQRYTGLGLDYFKQTSQQYRRHNINTAAFVN APSGSVGPWPLQEGMVSLEMHRGQSLFTQIMHLKMLGLIDDILISNAGVSEADLKEAAAA FNASQPTMRVIADAGLTDTERKIIFDSQHTYRGDHSDYVLRSTMTRVWYKDEDVPARHTV PIHKGDVLVMNNEYAQYKAETQIALQDLENNGRVNVVGHVAPTDMMLLETLQPWSDFRMI EGSGTRAALED >gi|269838489|gb|ACXB01000022.1| GENE 6 5090 - 6142 744 350 aa, chain + ## HITS:1 COG:no KEGG:PEPE_0229 NR:ns ## KEGG: PEPE_0229 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 346 1 343 347 322 49.0 1e-86 MTKLTNFLSEYQRPIHDPLELDLALFSRLVELPLTMATSELALPALLPDFCATLLAQIQV KDYLTLPADRQLLEQIAHSNRYQKVTLEELSPDNEHFLAITLGITKTLKVVAFRGPNGTL LSWRKDLHFALTDPEALQSAAQAYLQRSLQADDRQIICVGFSRGAAIAALACDHLTTPTA QRIQQVLLFESPGLPVGKYHFDVPVLELMAPFSVFSLVGIHPFPQRTVNSLNAGIWQHDL TSWTADRTGSFANAVGIAAPADFDQSPFFKQLSPSITEEDANRIVAVLFAVFREANYPSI PELIKHWNQFTGLIHQQVRNENSVVQLSVNRIQQIIFQNAATNLQAALRR >gi|269838489|gb|ACXB01000022.1| GENE 7 6283 - 7092 712 269 aa, chain + ## HITS:1 COG:PM1261 KEGG:ns NR:ns ## COG: PM1261 COG0351 # Protein_GI_number: 15603126 # Func_class: H Coenzyme transport and metabolism # Function: Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase # Organism: Pasteurella multocida # 1 265 1 264 273 228 45.0 1e-59 MSNEFPQALTIAGSDSDGSAGMEADLNTFQRRDVHGMCVMTACVAGNSYGIQASHPLPTD FVDQEFQSLADDFKIRASKTGMLADAPMIETVVKNYQKFDFGPLVLDPVIITKHGALLLE EDAFETLKAKLIPLATVITPNFYEAIKLTGIDIQNDDDMERAAKMLQEMGAKNVVLKGSH KPGAQSEVRDFVLLENGESFWMSAPYVETDRVNGTGDVLSACITAEIAKGTDIATAIRIG KRFVTAAISNSIAVGHKYGPVNHLAPFED >gi|269838489|gb|ACXB01000022.1| GENE 8 7185 - 8006 722 273 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0227 NR:ns ## KEGG: PEPE_0227 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 255 1 255 255 77 32.0 4e-13 MKKIITVMAALTMAVTLGACGKKAASSGTVSSEKTTQSPTKLQVVTKKKKTNNLGNVLIT IKTNSKAKVKITNTKIKKVANLTADADGKLIFNAHLGEHTKEAEFMITATAKHHQASGTQ KFKVYNDSAAYHEWEQNQSSAAESSSSAEESSSVDEQSSSADDSSAEVDITAGDDVSSAA SSSDSNTGTNTTGTAGGGYVAPSYSAPSYSYPTYQGGGNHYHSSTSGGSASSAPSSNDTV SGQADESDTDATVNNAVTDKVEATTEEATESAD >gi|269838489|gb|ACXB01000022.1| GENE 9 8171 - 8776 806 201 aa, chain + ## HITS:1 COG:BMEII0772 KEGG:ns NR:ns ## COG: BMEII0772 COG3560 # Protein_GI_number: 17989117 # Func_class: R General function prediction only # Function: Predicted oxidoreductase related to nitroreductase # Organism: Brucella melitensis # 1 199 1 197 199 214 53.0 1e-55 MSNSFLENLKKRRSIYALGKNVKLSEDEITEIIEEAIRQSPSAFNSQSIRAVILYGKAHD ELWDGILDILHGEVPNEEAFKATKAKVEGAFKAGLGTVLFYTDEDVIADLKKNFPLYKDA FDMFGEHGMGIANVDVWTALANEGIGASLQHYNPIADKFIAEKFNIPANWALKAQMPFGS IEQPAGDKEFMPDDERFRVIK >gi|269838489|gb|ACXB01000022.1| GENE 10 8967 - 10463 1554 498 aa, chain - ## HITS:1 COG:L78550 KEGG:ns NR:ns ## COG: L78550 COG0438 # Protein_GI_number: 15673437 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Lactococcus lactis # 1 495 1 495 506 302 33.0 1e-81 MKYFVSRGIYTFNSGTEHAQAQRTRLFNQQNDPARYVTMDYNRFWLRDAQRVGLAGDQVL NMYDYFQGTTQTPTVAVPVREFKQLPFDKYQLVDHGPDYYTVDHAGRQLARINILPGTVG LVGDVEYYDRFDNLVSRDNYDWRGFKSSIDYFHPDGSLGVRRFLNLAGEVVLENVYMNVA DQLQPTMWKLIGYHGQDYRFDSQEDLFLFFLNEIAEQDDKAVMVADHRDVDLMVMQVEKA QSRWLAFHGAHADHHGNVYAAYTPAFQAEPGEIDGIIVPTVQQQTAIQGQFPETPVYVAA DTVVDAKILANTVSKKKRTPDHVIFSGRLESDRRPDEALAAFLRLFDQLPDATLEYRGYT NDHQLLGRLKQMAQHMGIAEHVIFGDYLPDAAMDNFYNQAQVLINTAYDEAGGISVIEAM AHGVPVVAYYTDYGIENLVENNVNGFVVTNGDQAQMARRVKQILQDPDLWQELSRGAQQT AQAYQARTVYQQWKNILG >gi|269838489|gb|ACXB01000022.1| GENE 11 10463 - 12061 1293 532 aa, chain - ## HITS:1 COG:L76469 KEGG:ns NR:ns ## COG: L76469 COG0438 # Protein_GI_number: 15673436 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Lactococcus lactis # 1 513 1 514 541 501 46.0 1e-141 MIFFINAQMPEQKSGIEHAELKRLELFNKMKVDCRLILRDWSADTHRLTQAAGIDDQQLI NMFDYYQQALQVQRHIVHPDDLDFGVADVELQYEPENQRYLVVTPAQELVARINVAGDEE RVVSTELFDGFGNLYRVDNYDYRGFVSLSQWYTPDNQIENEEWKTPEGKTVIEAFTKQNR AGELKPSGWKLTDRHGKVYQFDTIETFTKHFLDELNDDFWSTKQPNIFVLDRNHLADWAF LNMEKPAYRVIHLHNSHASDAQAPMDSTLNQHYEFALRSMDRYDAFISATQKQTADVQER FHPHTRLFTIPVGIVPEQLRQAPQVPVAKRQFGKMVAFARIAWEKHLDDLVRAIAIVHQT IPEVTLDLYGYADPANNYEAKRKVEEVIQENHLEKVVSFKGYTTAVDEVENQAMMFGLTS RMEGFNLAVMEGIAHGLISFTYDVNYGPNEIVENDVNGNVVPYGDYEAMAQAIIKVLQDQ QLAQRYSTGAYTSAERYSEKQVWQAWQVLLDDAQASWPAKLRAMPEFREDVE >gi|269838489|gb|ACXB01000022.1| GENE 12 12305 - 13189 742 294 aa, chain - ## HITS:1 COG:CAC1045 KEGG:ns NR:ns ## COG: CAC1045 COG0697 # Protein_GI_number: 15894332 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Clostridium acetobutylicum # 1 294 18 312 317 182 41.0 8e-46 MEIALKVAGGTFNPIQLNFIRFLFGGLLLLPFTMKTLKKQGRRLKGRDIAAFSMTGFSCV LVSMTLYQLAIQLSLPATIAILLSANPAFGMLIGLVLLKEKMSRTNTLAVILTLAGLLVI INPFNLTNPLGITLGLLSSITFAIYGILTRLSSNKLGFGGMTMTCFSFIAGAIELAIFMA ITHIPVVSRAFSGLEGFSDIPFFQGITLSNILLLAYISFLVTGVGFGLYFVVMGEAGVPI ASLIFFIKPALAPILSLLILGDPIHLNTIVGIIIILIGSVVTLVGEKIAMRMSK >gi|269838489|gb|ACXB01000022.1| GENE 13 13371 - 14744 897 457 aa, chain - ## HITS:1 COG:RSp1417 KEGG:ns NR:ns ## COG: RSp1417 COG0477 # Protein_GI_number: 17549636 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Ralstonia solanacearum # 12 446 12 447 467 378 49.0 1e-104 MEIKKERTNSAWILTLTSLGFFMSMMDSMIVTTASTAIRNDFGISVDTLQWALNAYNITI AAVLLVGVALGERLGRRKIYNWGLFVFTVGSILCALSGNITVLVIARIIEGVGASVMTPM SMAILSNALPASERGKALGIWSGIGGLVLIVGPSLGGLIVAKLTWQWIFWINVPIGIIAI YLSNRLLPESKGAAEKVNIIDAILIILSSAGVIWALSEMTSKNIDMIPVIVGIVSILLGI WFVIRQKAESKPMIPMTFFKSVTFTGGNVATFLLYASMYGVVFFLPQFLQVAGHADALQA GLEILPWTGTLVVVAPFAGSAVDRFGEKSIATLGLFLQGLGYLLIMMLLSNQTAYWKLII PLIIAGAGLSMAGPALQKAVLGAVEPQSVGKASGIYNVFRLLGGAVGTTVSVIVFYAWGG IVGSLAFTAGFKAVMLSSGVISLLGICCSMFFRKSKG >gi|269838489|gb|ACXB01000022.1| GENE 14 15089 - 15400 186 103 aa, chain - ## HITS:1 COG:BS_yceK KEGG:ns NR:ns ## COG: BS_yceK COG0640 # Protein_GI_number: 16077366 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus subtilis # 16 103 13 100 100 80 46.0 7e-16 MKNNTDNSNLDSTVVEQRSLEIFKALADPIRIQIIKYLKKVDHEVACGEVGKVVNISKSS GTYHFKLLEAAGLITARKEAREKYVTLNMKTFDKYVTGFIKLL >gi|269838489|gb|ACXB01000022.1| GENE 15 15450 - 15719 378 89 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116492030|ref|YP_803765.1| SSU ribosomal protein S14P [Pediococcus pentosaceus ATCC 25745] # 1 89 1 89 89 150 79 4e-35 MAKKSKIAKEKKIEETVMRYAALREKLKAQKDYQGLSKLPRNASPTRIHRRDALDGRPHA YMRKFQLSRLNFRKLAHEGQIPGVKKASW >gi|269838489|gb|ACXB01000022.1| GENE 16 15886 - 17043 943 385 aa, chain - ## HITS:1 COG:SPy1903 KEGG:ns NR:ns ## COG: SPy1903 COG1929 # Protein_GI_number: 15675716 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerate kinase # Organism: Streptococcus pyogenes M1 GAS # 1 378 1 352 357 170 32.0 4e-42 MKVVIAADAFKDCLSSDEVNEAVRESIFKIDPEVEVVTAGISDGALDGLDVLKRWGREIE EIPFKTTDLMGRPVDAPYLTTNYKKAPLAIIATASTAGKHRILPSPGSFIRATSFGLGTQ IRDALGRGAKRILILTGETGVSDGGLGLLQALGVNFYDEEGHLIGRDKNLLATNFKEVRN LESVVQQFNHVEIMIATNTDRPYAGYRGAQRTWGMDKGGTKKQIEVFDKRMDGFFMTVIK ELNLDLRDVAGLGVDGGIGGALAVLGGQIVPTGDIMANLVGLPQKLEDADLFITGTGKIS HHPQTPHVINQVLDLATKMSVPAVAICGQVDNSMRHYPNEKVAVFSIQRRPSSLRRSMET RYAIVNIKIVTRNIIRLMNMARAEK >gi|269838489|gb|ACXB01000022.1| GENE 17 17551 - 18471 1186 306 aa, chain + ## HITS:1 COG:lin1775 KEGG:ns NR:ns ## COG: lin1775 COG0039 # Protein_GI_number: 16800843 # Func_class: C Energy production and conversion # Function: Malate/lactate dehydrogenases # Organism: Listeria innocua # 1 298 1 295 302 240 41.0 3e-63 MTRKIGIIGMGHVGQAVAQQIITNGYTDDLVLIDQNEAKVGADALDFEDAMANLTYHTNI VVNDYAALKDADIIISALGKISLSDNPNVDRFAELPHNRKQVREVAEKIKESGFDGIIIA ITNPVDVITSLYQEVTGLPKEHVIGTGTLLDSARMQRAVAKGLNIDPRSVSGYNLGEHGN SQFTAWSTVRVLDRPIKEIANDRGLDLHEINEEARIGAGDVMKGKHYTNYGVAAAAVRLA NVVLNDAREVLPVSNFREEYGTYLSYPAVIGRDGIVEQLQLQLTDEELYKLRKSAHFIMQ KIAEAD >gi|269838489|gb|ACXB01000022.1| GENE 18 18666 - 18971 311 101 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0217 NR:ns ## KEGG: PEPE_0217 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 94 1 94 94 124 63.0 9e-28 MSVIVPIERIRLGNSEVETPGLTLKVTNVLRGENAVLGFLDGGDDLIISVLKAQNGKANI GDQWIKFEIRDLGNQVEVRCDETIKITDIFALLQNMSRSYV >gi|269838489|gb|ACXB01000022.1| GENE 19 19152 - 20810 1227 552 aa, chain + ## HITS:1 COG:BS_gspA KEGG:ns NR:ns ## COG: BS_gspA COG1442 # Protein_GI_number: 16080894 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases # Organism: Bacillus subtilis # 278 539 6 270 286 202 39.0 1e-51 MKKINILLAADRNYADQLCITIKTALETLNSATRAHFIVLTNNLGDQTRALLDKLMHNFH TIEYLNLDDERFDFCPTNQHINKTAYFRIIAPKLLASRQIDRLIYLDVDVLIRKDLTELA ESNLNQNTVGAVIDTGQAFALHRLGVDPVVAASNLYFNSGIMVIDVAQWNAHRITEKTLA FIRNHADRIIFHDQDALNAVLAGEVQFLHPKWNLQNSIIFRKHRPINQGYAELIDEAIKE PSIVHFTTHEKPWKDLTVHPYLDEYHEELGELEMHRGVINVISAANSAFTQALATSYVSI LENDPDHQYNFFLLPDHLTDRDMMLLGSIIARYDNATIKVVEVNEELLANAVESDRIVKT AYYRILAPALLPSINRAIYLDCDIIANTSLHELWQTNLEGNVIAAVEDAGFHDRLEKMGI TKENEKYFNSGMMLIDLVRWRARSTTQKVLDYINQNPEKLRFHDQDALNANLYDDWLHLH PQWNAQSNIIMETIFPPRTELLEPYAETREDPKLIHFCGHVKPWHEGCEHPYADVYLKYH EMASNQGVRVSG >gi|269838489|gb|ACXB01000022.1| GENE 20 21129 - 21293 125 54 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIRIIIIALIIYGIIQIPFIIKAYWGRRKYQQKIKDGERQNQKIMEEQKKRDHR >gi|269838489|gb|ACXB01000022.1| GENE 21 21397 - 21486 79 29 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MESLLPVESTDAILALLVGHWQTSFGEGK >gi|269838489|gb|ACXB01000022.1| GENE 22 21486 - 22340 825 284 aa, chain + ## HITS:1 COG:PM0638 KEGG:ns NR:ns ## COG: PM0638 COG4667 # Protein_GI_number: 15602503 # Func_class: R General function prediction only # Function: Predicted esterase of the alpha-beta hydrolase superfamily # Organism: Pasteurella multocida # 3 282 2 278 280 220 40.0 3e-57 MEKAALILEGGALRSFFTSAVLDYFIDQEMEFEYIHGVSAGTMCAMNYISKQKGRSKDVN LHFLHDKRYIGFNNLVRNGGIFNLDFLFSPECYAYSPFDYMAYKDSQQIFEITATNLLTG KADVFRKTDTEGQEEAIKASASMPLLSSIRVVNHQPYLDGGIADSIPFKRAQELGYEKLV IVLTRDITYRKAENSRAMNRLVRMKYRDFPQFVSAFESRPRRYNESLEEIERLEREGKAF VIRPQQPVTVSRVERDNNKLMDLYHQGTAVIESQMADLRAFLKN >gi|269838489|gb|ACXB01000022.1| GENE 23 22389 - 23318 532 309 aa, chain - ## HITS:1 COG:BH1869 KEGG:ns NR:ns ## COG: BH1869 COG4189 # Protein_GI_number: 15614432 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Bacillus halodurans # 14 309 1 300 313 307 49.0 2e-83 MKRKCKRFDNGGHMQLDISDASLKVYEALASSVRLQIIRLLSDQPMSVQELAEALNLSSP IVTKHLNKLAEAEIIHSKRQGHQKVSSLRVDTIDIKFPRQIYPTFSVHKTGIPIGHYTEF SVKPSCGLAGPDGYIGNVDNPKYFMLPERMNAGMIWFNDGYVEYQTPNFINIDEHLEMLD LSMELGSEFPFSNNTWPSDITFSINGKEIGTWRSPGDFSDVRGKYTPDWVPDNVNQYGIL KTLRITDHGTYLDGQPFTEVCLADLPVNKDVWTIRFEIKPDAKKSGGCTIFGEGFGNYDQ NIELSAFYS >gi|269838489|gb|ACXB01000022.1| GENE 24 23539 - 24519 943 326 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|90020424|ref|YP_526251.1| ribosomal protein L11 methyltransferase [Saccharophagus degradans 2-40] # 8 320 4 310 314 367 55 1e-100 MISATGYVNPLIVQRADPYIYKHTDGYYYFTASVPAYNLIEIRRAKTLNGLAHAAPRTIW RKHPDGSGPMSQLIWAPELHYIDGKWFIYFAAAHTKEFDHNGMFQHRMYCLECDNPNPMR DESDWVERGQVKTPLDTFALDATVFKAHDRLYYVWAQKDPAIKGNSNIYIAEMENPWTLK SEPVMLTKPEYDWETKIFWVNEGPAILHRNGKYFLTYSASATDENYAMGMLTIDEDADLL DARNWAKSPTPVFQSNLAIQQYGPGHNSFTVAEDGKTDLLVYHCRNYTDIKGDPLYDPNR HTMVQPFGWTADGRPDFGKPVPYNYE >gi|269838489|gb|ACXB01000022.1| GENE 25 24531 - 25781 1271 416 aa, chain + ## HITS:1 COG:CAC1530 KEGG:ns NR:ns ## COG: CAC1530 COG0477 # Protein_GI_number: 15894808 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Clostridium acetobutylicum # 24 407 21 404 411 293 41.0 6e-79 MNNTKPQSKHFWGFPLTHFSYFFIWAIINGYLTLWMEQVAHLNGTESGAVFSMMAGISLI FQPIFGVVSDKLLFKKTLILTISIVAIFIGPYFQWVFMPILHINAFLVAFVTGTFLSFVL NGGVSVIEQYVQRASLANGFEYAHSRVGGSVAGVAASLIAGPIFLWSPNSIFWACTVAAI ILTGLLLFSDKIDLENAQAAGDTSNSLNLKTVMSVFKLKNLWILAIFYMGASALYDVFDQ QFIIFFKMFFHTAAQGTLVYSYMTSAQIAIEFCLMFPMPWIINKIGSRNGLIIYGFITAL RILGSALAPNWIWLVGFRLLAGLEMPLLLTSIMKYIAGAFDIRLYATVYALASNFAKQVS VFIFSSVAGKMYDVIGYQHTYLIMGLFVFAITLFATFTLKKEDPVQAGEVDAKNPD >gi|269838489|gb|ACXB01000022.1| GENE 26 26085 - 27383 1414 432 aa, chain - ## HITS:1 COG:lin2101 KEGG:ns NR:ns ## COG: lin2101 COG0213 # Protein_GI_number: 16801167 # Func_class: F Nucleotide transport and metabolism # Function: Thymidine phosphorylase # Organism: Listeria innocua # 1 431 1 431 433 498 62.0 1e-141 MRMVDVIDHKRNGSALTKEEISAFVEGYTNGEIPDYQASALLMAIYFNGMTDEEQANLTM QMLNSGDRLDLSDIPGIKVDKHSTGGVGDKTSIPLAPMVAALGIPVPMISGRGLGHTGGT LDKLEAIPGFEVERSEAEFKKQVRDIKVAIVGATGNVAPADKKIYALRDVTDTVDSIPLI AGSIMSKKIASGTDALVLDVKTGTGAFMKEEADAVKLANALVKIGKSVGMNCMALISDMN QPLGNMVGNALEIQESIAILKGEGPEDITELVMTLGSQMVVLAKKAATLAEARAKLEEVV ANGSALEVFRQMIVAQGGDPRVIEDPTLMPQAKYHFELPAPQAGYVTKMTADEIGIAAML LGGGRQAKTDVIDYAVGIELHKKVGDAVAEGESLLTIHSNTADVANIKELLYNNIEIGTD AQPIQLVHKIIK >gi|269838489|gb|ACXB01000022.1| GENE 27 27406 - 28356 1120 316 aa, chain - ## HITS:1 COG:BS_deoR KEGG:ns NR:ns ## COG: BS_deoR COG2390 # Protein_GI_number: 16080994 # Func_class: K Transcription # Function: Transcriptional regulator, contains sigma factor-related N-terminal domain # Organism: Bacillus subtilis # 6 316 2 312 313 313 48.0 2e-85 MSRMTDKTKIKKSLEVARMHYEAGMGQVEIAKQLGLSRPTVSRLLQFAQDNGIVQIKIVD PFSSTQELEKMLCEKYQLNEAHVVYAEYENYQNVTQHLGMYTAKYLAKVVKDGDLIGVSW GKTLNEVAKALTPQPVEDVQVVELKGSVTYSPTPVFDEEVLMKFGNAFHTTPHEFPLPVV FENQTTHDVVMQDRYIKRLIDLGKKANIAIFTAGTIRDDALLFQTGYFDQGDIARIQKTA VGDICSRFYDQDGQIAVPEVNNRTVGIDLAELRNKERAVLVAGGKWKYEAIKGALAGQYA NCLITDVATAQRLVDE >gi|269838489|gb|ACXB01000022.1| GENE 28 28369 - 29634 1323 421 aa, chain - ## HITS:1 COG:lin1959 KEGG:ns NR:ns ## COG: lin1959 COG2252 # Protein_GI_number: 16801025 # Func_class: R General function prediction only # Function: Permeases # Organism: Listeria innocua # 5 414 15 424 427 312 47.0 8e-85 MGISKTRLKTEILAGITSFFAISYIIIVNPMILSDAGIPAGLSVFATVFSSAIGCLIMAL WAKAPVILTPGMGVNAFFTYTVVVGMHLSWQQAVAISIFSSLIYMVIAFTRASEFLANAI PAVLKKGITVGIGLFLVTLGLEKAELIQSGGKRALLAAGSLSNPATLLALFGLLLSLILF LRRVPGGFVIGIIVTSLVGVLFHIGGTQATSISLSQLPKYSEILFKGDFSQMFSIKFLLA VFSMTMILVFESMGILEGILQDPSQFRKAFQASSVTTFISGFLGTSPTVAAAESASGIES GGRTGIVSLVSGILFLLSLFFIPLLSYVPQAAIAPVIIITGAVMMEQLATINFADFTDWF PAFLIIVLIPLTGSISTGLAFGFVAYPILKLAMGKQSEVHPIMYVLGLLFLAQLGFNSIL V >gi|269838489|gb|ACXB01000022.1| GENE 29 29669 - 30943 1085 424 aa, chain - ## HITS:1 COG:SA0600 KEGG:ns NR:ns ## COG: SA0600 COG1972 # Protein_GI_number: 15926322 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside permease # Organism: Staphylococcus aureus N315 # 1 424 1 409 409 379 52.0 1e-105 MYLIVNIIGLVVFLSLGVLFSKNRQQIKWKSVGIMVVFNLVLAWFLTSFPIGRSIVAGAS AGFNQLVQVAYQGIAFALADWVDVKSMNFVTSSLLPILMIIPLFDILTYVGILPWIIKWI GRGLSKLTGQPKFESFFAVEMMFLGNTEALAVSSLQLQQMKAERNLTLAMMSMSCVTASI IGAYTSLMPGQFILTAIPINVINAIIITNMLNPVTVTPEEDTIATMAGSGSSASAQDVGS GSETLAEATVAEDEVPTREPFFSFLGDSILNAGKLVLIITANVIAFVALAALVDKLLGII NPWLTLEHILGIVMFPFAWLTGLNVHDAFEFAQYMGTKLVTNEFVVMGKVTGTINQFAPH YKAVLTVFLTSFANFSTVGMIIGCFKGLVNRQKNDVVAKNVGYLLLSGIWVSLVSAATVG LFVW >gi|269838489|gb|ACXB01000022.1| GENE 30 30957 - 31661 883 234 aa, chain - ## HITS:1 COG:lin1970 KEGG:ns NR:ns ## COG: lin1970 COG0813 # Protein_GI_number: 16801036 # Func_class: F Nucleotide transport and metabolism # Function: Purine-nucleoside phosphorylase # Organism: Listeria innocua # 1 233 1 232 233 294 64.0 8e-80 MSTHIAAQKGEIADTVLLPGDPLRAKYIAETFLENAECYNTIRNAFGYTGTYKGKRVSVQ ATGMGIPSISIYTNELINEYGVKTLIRVGTCGGMSPDIHVRDVLIAQGASTDSSIIRNTF GRDIYYAPLADFAMVEKAHQVAQANQIPVQVGNVLSEDRFYNDEIDRQKLVQYGVKGAEM EAAALYLLAAKYGVRALAVLTISNHIITGEETTAEEREKSFDDMIKVALETAIS >gi|269838489|gb|ACXB01000022.1| GENE 31 31674 - 32864 1122 396 aa, chain - ## HITS:1 COG:BH1530 KEGG:ns NR:ns ## COG: BH1530 COG1015 # Protein_GI_number: 15614093 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphopentomutase # Organism: Bacillus halodurans # 2 395 5 393 393 457 56.0 1e-128 MKFKRVFTIVTDSVGIGEASDAADFDDVGADTLGHIGEFWKGNFQVPNLQKLGLSNIRPD HPIEGVPVADHPQGFFGKMHEVSVGKDSMDGHWEMMGVPVKEPLGFFPNGFPQELIDKIA KFSGRSVIVNKPYSGTEVIHDYGEEQLKTGALIVYTSGDSVLQIAANTAVIPLEELYKIC EYARSITIDKPYRIGRIIARPYVGTNKDNFKRTSDRHDYTLAPTSETDMDRLKAAGFSVL AVGKINDIFSGQGITDGVHTESNHDGMVRTIENAQKDFTGFSFTNLVDFDAMYGHRRNPE GYGKALMEFDQQLGELLPLLKDDDLLVITADHGNDPGFKGTDHTREYVPLLAYTPRVAEG KSLGVRDTYADLGATILDNFNVAGNGVGTSFLNELQ >gi|269838489|gb|ACXB01000022.1| GENE 32 32903 - 33550 754 215 aa, chain - ## HITS:1 COG:L63310 KEGG:ns NR:ns ## COG: L63310 COG0274 # Protein_GI_number: 15673422 # Func_class: F Nucleotide transport and metabolism # Function: Deoxyribose-phosphate aldolase # Organism: Lactococcus lactis # 1 213 1 211 220 231 61.0 7e-61 MNLAKYIDHTILAPEATQSQVDQIIKEAKEYDFASVVVNPYWVSYVADKLKGTDVNTVTV IGFPLGANTTATKVFEAKDALQNGATELDMVINIGELKAGHDDAVLNDIKAVVEAGHAEN RHVKVIIETALLTDEEKVRACELSEKAGADFVKTSTGFSTAGAKVADVKLMKQTVGDRLG VKASGGIHTKSEAEAMIEAGATRLGASSGVKIMNS >gi|269838489|gb|ACXB01000022.1| GENE 33 33974 - 34558 583 194 aa, chain - ## HITS:1 COG:L113864 KEGG:ns NR:ns ## COG: L113864 COG0652 # Protein_GI_number: 15672875 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family # Organism: Lactococcus lactis # 1 194 1 195 196 240 62.0 1e-63 MTYPQLDLANVKGTKITIQTNHGDIKVQLFDELVPKTVKNFVELAKQGYYDGVIFHRVIP DFMIQGGDPTGTGMGGESIYGKTFEDEFSNQLYNLNGALSMANAGPNTNGSQFFIVTNTN VPKKMIRQLKAAEFPEEIVEAYRKGGTPWLDGHHTVFGQVIEGMDVAEAISKVDRNYEDR PTEDVVMEKVLVEE >gi|269838489|gb|ACXB01000022.1| GENE 34 34677 - 35291 424 204 aa, chain - ## HITS:1 COG:SPy0640 KEGG:ns NR:ns ## COG: SPy0640 COG0637 # Protein_GI_number: 15674711 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Streptococcus pyogenes M1 GAS # 1 204 3 212 218 119 34.0 4e-27 MKKAFIFDMDGVLIRSEEFYFERRMRFFKENNLTPGSSDIDDYIGVSNEKVWENLVSEPS ERERIRTKYQPFLEKNKINYQEYLDKQVPKVLATLQKQGKMLALASAGEEKEINRMLREC DLAQYFNVVISGEKVKKNKPAPDVYLETIKALHVSKDDCVVVEDSPTGILAAKRAGLEVW AVPAPVDQNLADVVLEDFGSIIEK >gi|269838489|gb|ACXB01000022.1| GENE 35 35351 - 36328 1145 325 aa, chain - ## HITS:1 COG:STM0572 KEGG:ns NR:ns ## COG: STM0572 COG2222 # Protein_GI_number: 16763949 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted phosphosugar isomerases # Organism: Salmonella typhimurium LT2 # 6 323 9 327 328 248 40.0 2e-65 MNMSPKSIIADIKKKNSKINRVIFTGCGASMADLYPGYYFISHESKRFLSAFMQANEFNY DTPQDVGENTIVITASLGGTTPESIEATKHARELGAHVITLSHMPNSPIINAAEYGLVHG FEEDYAHKTEKMTLALKLAIEIVNQFEGYEFYEDAQKAFDGLFDLINQEAAMVDPAAEEF AARYKDEKNIYVIGSGASADVAYSTASFLFMEMQWISAPTIHSGELFHGPFEMALKDTPY LLFMNDGKTHHLDARAMAFLQRFDTKLTIIDAKDHGLASIASKNVIDYFNPMLLTGVMRV YAEKLAAARQHPLTKRRYMWKLENY >gi|269838489|gb|ACXB01000022.1| GENE 36 36382 - 37215 712 277 aa, chain - ## HITS:1 COG:STM0574 KEGG:ns NR:ns ## COG: STM0574 COG3716 # Protein_GI_number: 16763951 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Salmonella typhimurium LT2 # 4 260 15 268 284 238 47.0 1e-62 MAENTQIDSKKLRKKYWSFFWRSYAIQASWNYEGQMNLGFLYGIAPTIDSLYSSKNEEDL QRKKAAYKRHLAFYNCTPQTSAFVLGLASSMEEEYAREPTSFNPDSINAVKASLMGPLSG VGDSFFQGTIKVLAFGLGVNFARQGSILGPILAILISFVPAALVTYYGGKLGYTAGNSFL KKLTSQGIMDRAMYLVTIVGLMVIGSMIASMIGITTPIHMGKTFNLQKTLDTIFPQMIPL LVTFFMYWLLHKKVKTGWILTICILSGLLFSVLGILA >gi|269838489|gb|ACXB01000022.1| GENE 37 37227 - 38009 617 260 aa, chain - ## HITS:1 COG:STM0575 KEGG:ns NR:ns ## COG: STM0575 COG3715 # Protein_GI_number: 16763952 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Salmonella typhimurium LT2 # 1 240 1 240 247 184 47.0 1e-46 MLLNAILLGIIAVFGTMDSRMLGRTNFEQPLVMAALVGVALGDLTKGLIVGASLELIFMG IVNIGAAAPPDLVLGSVMATAFAILSDTNAQTALTIALPVAILGQMVGILLRMFMSTFVH KAESDIEKGEFAKARRFHILWGPILYSLMYFVPVFVAIYFGADVVKEIVQSIPAWLTNGL NLASKILPAYGFALLMQTMLSKKTVAYLLLGFFITAYAGLSVTGVAIFAALLVIILNEIL PKNSVDQGLTSDEDDDLEEL >gi|269838489|gb|ACXB01000022.1| GENE 38 38022 - 38492 503 156 aa, chain - ## HITS:1 COG:STM0576 KEGG:ns NR:ns ## COG: STM0576 COG3444 # Protein_GI_number: 16763953 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Salmonella typhimurium LT2 # 1 154 1 154 156 132 42.0 4e-31 MIKVIRIDHRLLHGQVIFAWTKSQGIERIVVIDNVAAGDDFKKMSLKLSKPADIKLSVFS VDQAKERIAKINNLKSNTMIIFGDVLQAGQIVPLLEGVKEINYGGVKNRPDTKRFSNAVF LTEEEVKCSQELKNLGFDLYMQQVPTSKRESLNELI >gi|269838489|gb|ACXB01000022.1| GENE 39 38495 - 38896 372 133 aa, chain - ## HITS:1 COG:STM4535 KEGG:ns NR:ns ## COG: STM4535 COG2893 # Protein_GI_number: 16767779 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Salmonella typhimurium LT2 # 4 103 6 105 140 65 36.0 3e-11 MKIILASHGALAKGMKDTLDMIVGNQVSIQAYSAYDEENVDFASDISQQITREVNEQFII VTDVMGGSVNNAMTELVLRYKNVFLITGMNLPLVLSLATYSGDLDLKALDELVQEGKRGL INVNKMVESAKEE >gi|269838489|gb|ACXB01000022.1| GENE 40 38992 - 41730 2235 912 aa, chain - ## HITS:1 COG:STM4534_1 KEGG:ns NR:ns ## COG: STM4534_1 COG1221 # Protein_GI_number: 16767778 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain # Organism: Salmonella typhimurium LT2 # 1 440 1 446 460 314 40.0 6e-85 MVKDQVAAMLQSVTEREDWQEHGATAEDFSQRLGVRRNTISAYLNDLYKEKIAIKLNSRP VKFWDRATLEQRYDIVLENIEFESQAALENIVSQPKRTAFDEVIGGHGSLYTPIERLKAA AGYPGTRLPVLITGPTGAGKTYLAQVYYQYCVDKGYLAPESRFVHLNCAEYADNPELLAS NLFGYKKGAFTGANQDSTGLFDEADGGMLFLDEIHRLDAKGQEKLFNYLDNGMITPLGAT KEGHHVQVRLVFATTEDIQSHFLDTFIRRIPIQIEIPELNDRPRQERENLVKLFYLRQSQ KIQRKVLVNTSVLNILSSSSYLGNVGQLKNTILISVANSLQRAAQSSNIEILLADVPKTV IDHNIQDASLLSFSDQFISVLPTMKIDDLISESQAYTDEIKRVMLKIIQQFQQTAKRDTF IDNAIDEINQLCDYLIFKKDTEKSDMSVGFLKKMFADRIANVENNSDTQFMGNVALVLAY YFYNRNRANWHLVQRDEQCIQQINATFHGEDVEVDQIVGDLRLITAKTMNLHLDDVDELF IHLYLRSVKKETDSQNIRCIILSHGYSTASSIASVINNLFNEHVMDAIDMPLDIDVAEIG EKVSSYVKNRQINRGLILMVDMGSLEGIQKFISSEIDFPIAIVNNVSTQSALLVADDIRH HKDIEQIMRNVRQAMVPKTQIIYPKEIKRNLIVTCCFTGIGTANSVKKLLLDSMPAEVDC QIQAYEVDRLKAEEQIAIFNKLYNVVAVVGTIDPGLPDAPYISLESIISGSEMEKLDKAL QVCMTTEQLQQFKEQLIHSFSLERVINSITILDAHLVMDNIDRAINKFNQLSGHQLGNIT KMSLYVHVSCLIERLIRNEPITSYDLEQLSDTEDQRLFKWIKESFSVIEKIYSVEIPASE YGYIFDIIQADA >gi|269838489|gb|ACXB01000022.1| GENE 41 42455 - 43297 819 280 aa, chain - ## HITS:1 COG:lin2848 KEGG:ns NR:ns ## COG: lin2848 COG0656 # Protein_GI_number: 16801908 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Listeria innocua # 10 274 11 275 280 271 49.0 1e-72 MDIQNNLITLADGNQMPQEGFGLYKVRGQAAVDTAVKAAYENGYRLFDTAQLYENEQEVG NAFKKFAIPRENIFVTTKVTEARQGYDEAIASVKESLQKLQMDYVDLLLIHWPVRQHFFE TWRAFEDLKKAGLTKSIGVSNYQTIHLEYLATKANEMPVVDQVEMHPFLTLKPVIEFNKQ HNIVTQAWSPLGRGTVLDQEVLKEIADKYQKSPAQVVLRWHLQNGVAFIPKSVHEERIAQ NADIYDFELSDEEMKQVDKLNKFARTGREPELTYEYGRMY >gi|269838489|gb|ACXB01000022.1| GENE 42 43486 - 44289 747 267 aa, chain - ## HITS:1 COG:L54944 KEGG:ns NR:ns ## COG: L54944 COG1737 # Protein_GI_number: 15674168 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Lactococcus lactis # 7 253 9 257 282 101 27.0 1e-21 MNFFDIVESHLSTLTKNEQALFDYVVSNMDKIKNQSIREAASETYVSTATFLRFVKKIGF VGFSEFTTVIKYTVLNEKNEQEKEMPFEVSQVDYREEYLKNITESVRVIPSKKLHEITKQ LANHPTIYLFAKGISKYAADYVYYVYTMAGFTVKYPRDRDFRRMAIKQVKSDDLVFMLTY NGRNREFLEMIKQLKGEAKTPFLISITEPDNNTIQNLSDINLYIFADVIEVNDVEISSRV STIALMELILYQYIEDYGGQDFNFMKK >gi|269838489|gb|ACXB01000022.1| GENE 43 44303 - 45394 802 363 aa, chain - ## HITS:1 COG:PA0292 KEGG:ns NR:ns ## COG: PA0292 COG2957 # Protein_GI_number: 15595489 # Func_class: E Amino acid transport and metabolism # Function: Peptidylarginine deiminase and related enzymes # Organism: Pseudomonas aeruginosa # 4 362 5 364 368 329 45.0 4e-90 MKLTTFPQQDGFWMPAEFESKGQSLMMWPQRPDNWRNGGKPAQKSFVQLATLIANYQPVT VFVNENQYKNARAMLPTQIRVLEMSNNDVFIKDTGPIELVNADGVVRCMDFGFNAWGGLL DGLYFPWDKDQEVTGKLADLFGWDRYQSDFILEGCSVVTDGEGTLITTEEVVLSEGRNKG ITKAQAEEVFQNYLGAQKVIWLPEGFFLDEAGGDVDNMVNFIRPGEIVLSWTDNPGDPQH RISQRAYDILSQTKDARGRNLIIHKMDLPQRPVKLTALEAEGVDPINGMLPRTEGQRLTA TYVNYITLDQAIIFPEFNDLNDQKARQELANYYPDREIIGFPATEILTGGGGLHTVVLNM PGH >gi|269838489|gb|ACXB01000022.1| GENE 44 45589 - 46683 1128 364 aa, chain - ## HITS:1 COG:L136332 KEGG:ns NR:ns ## COG: L136332 COG2957 # Protein_GI_number: 15673679 # Func_class: E Amino acid transport and metabolism # Function: Peptidylarginine deiminase and related enzymes # Organism: Lactococcus lactis # 2 363 4 364 366 447 58.0 1e-125 MKTLDSTPKKDGFRMPGEFEEHAGAYMLWPQRPDNWRNGGKPAQKTFAQVAEAIAEFEPV TVGVNDDQYENARNMLPDQVKVIEISNNDSWIRDCGATFVKNDHGELRAVDWTFNAWGGL VDGLYFPWDKDDRVAQKMAELEQTDRYRLDDFVLEGGSIHVDGQGTLITTEECLLSEGRN PQLSKDQIEEVLKEHLNLEKIIWLKKGIYQDETNGHVDNIANFVKPGVVALAWTDDQNDP QYEISKENLAILENATDAQGRKLKVVKLRVPKPVLITKAESEGVDAVDGTLPRTEGERLA ASYINYYTANGGIIFPLFNDPMDKEAQKVLSELYPDRKVVGVPAREILLGGGNIHCITQQ VPQR >gi|269838489|gb|ACXB01000022.1| GENE 45 46680 - 48071 1205 463 aa, chain - ## HITS:1 COG:L138484 KEGG:ns NR:ns ## COG: L138484 COG0531 # Protein_GI_number: 15673681 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Lactococcus lactis # 1 454 1 456 466 421 51.0 1e-117 METGKKKFKLFDAVLMSVVVILVVESAAPAAAIGTSQFFWWIFLLGLFFLPYGLISSELG TTYTGDGGLYDWVKQAFGSRWGGRLAWLYWINYPIWMASLAVLFTQVAETIFNLKLGTWL AVGIQLIFVWFVVIVGNQPASESKWIMNLAAFAKIFTICSLTGLGVYVAVTRGVANSFAP REFLPQMNINSLSNLSIIIFNFLGFEVVATMADDMDNPRKQIPQAIIYGGVLIAVFYLMS AFGMSAAIPTNELSASSGLLDSFILLIGKMNWFVVVIGVLFLYILVSEMVSWALGVNYVA DYAAKDHVLPNVFGIENKQHMPVGTGYLNGVVATILIVVAPLIPNQDIFWAFFSLNVIAL LLSYTMMFPAFLKLRKIDPQRERSFKVPGGKGLLWCMTWIPEFLLLLTVIFTAVPLSTTA AELSAKVPILIGVIVTLVVGELVVRIAERREVNQRLKIKETQK >gi|269838489|gb|ACXB01000022.1| GENE 46 48116 - 49147 884 343 aa, chain - ## HITS:1 COG:L0113 KEGG:ns NR:ns ## COG: L0113 COG0078 # Protein_GI_number: 15673682 # Func_class: E Amino acid transport and metabolism # Function: Ornithine carbamoyltransferase # Organism: Lactococcus lactis # 3 332 6 334 340 417 61.0 1e-116 MAKRDYIDTNTYTQEEIKFMIHLGLKLKEAIKNGYYPPLLKNKTLGMIFEQSSTRTRTSA EAAMTELGGHAQYLAPGQIQLGVHETIEDTSQVLGRILDIIGARVDRHKTVAEVGKYAKV PVVNFMSDYNHPTQELGDIITMQEHLPEGKQLSDCKIVFVGDATQVCVSTMFMATKMGMD FVQYGPKGFQMKDDVVKVGKQNAKKYGGSVTITENADEALQDADFVYTDVWYGLYDDEMP KEERMKIFYPKYQVNAELMAKASSHVKFMHCLPATRGEEVTDEVLDSDYSIVWDEAENRK TAMRAIFVYLLNPTLEYASPAVAAHYDAELELMLRNAPERRQG >gi|269838489|gb|ACXB01000022.1| GENE 47 49368 - 50417 450 349 aa, chain + ## HITS:1 COG:no KEGG:PEPE_1599 NR:ns ## KEGG: PEPE_1599 # Name: not_defined # Def: AraC family transcriptional regulator # Organism: P.pentosaceus # Pathway: not_defined # 11 335 9 331 384 189 33.0 1e-46 MIMDNATLKYVLDQLYKEYLIPLFLVNNQYEIVIPKTNWSSRSFKEQVLEETHPNEIRYF KKGAFFYSNFAFDLPEYGTGTVMIGPCGALEAGSDSIHFQGHTYFAGIHYCKSSREGFEQ FTNLIFAIIRGTLGQNQKQHWYYDRVYKSTNYHLAQNLSSRRDQKNTLDSYEFERRYIEA IRRNEPDKIKWLFKKMADTYKVKLSDSDLEGLKYKYAGLITILTRVSIEDGVPAEQAFSL SDALLQRLQSIYTYAECLVSVQEASYKFMDMIHSYQYATKNQLVQKILNYIDEHIYDRIT LADLADFTNRHKLQSLPSLKKKLASRFTCTLTTRKFRSPSIYCYLPNFH >gi|269838489|gb|ACXB01000022.1| GENE 48 50393 - 50539 160 48 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLFTELSLKEISGLLHYSSQSHFVHTFKQFMGITPGEFRNENLTYHFE >gi|269838489|gb|ACXB01000022.1| GENE 49 50582 - 52078 1289 498 aa, chain - ## HITS:1 COG:BS_xylB KEGG:ns NR:ns ## COG: BS_xylB COG1070 # Protein_GI_number: 16078824 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar (pentulose and hexulose) kinases # Organism: Bacillus subtilis # 1 493 1 493 499 588 55.0 1e-168 MAYVLGIDLGTSAVKVTAVNRAGQIVAQSSQEYAISNPQAGYSEQNPEDWVQKTTLTIQN LAAVEHLDLSKVEGISYSGQMHGLVLMDKNYRVLRPAILWNDTRTTAQCEEITGKLRGDF LKITRNRPLEGFTLPKILWVKENEPEIFAQTEVFLLPKDYVRFRMTGKIGMEYSDAAGTV WLDEIHKTWSKEIADKLALPLEICPPLLESTAVVGNITVAYSAISGLPAETKVIAGAADN AAGAIGAGIISEDKILSSIGTSGVVLAYEKDRKTDYAGRLHFFNHAIPDSYYSMGVTLAA GYSLSWFKQTFAGQQKFADLVEDAKKSPIGAKGLLFTPYIVGERTPYADAQIRGSFIGMD SRQQLHDFTRAVIEGITFSFRDLLSIYRSEGKHFVTAVATGGGAKSALWMQIQADVFNMN VVSLENEQGPGLGAAMLAAVGVGWFKDLAECSETFVKYGKVYRPKANNVAKYDRIYRIYQ QAYSATRPMTGDLLKLDN >gi|269838489|gb|ACXB01000022.1| GENE 50 52327 - 53670 1437 447 aa, chain - ## HITS:1 COG:BH2757 KEGG:ns NR:ns ## COG: BH2757 COG2115 # Protein_GI_number: 15615320 # Func_class: G Carbohydrate transport and metabolism # Function: Xylose isomerase # Organism: Bacillus halodurans # 1 444 1 437 440 507 57.0 1e-143 MSEYWDFKKVGYVGNKTLTSGDGFHFYNPEEVILGKKMKDWLRFSVAYWHTFDQRLVDPF GDGTAIRPYDKYTDPMDNAMAKVEASFEFYDKLGVDYFCFHDRDLAPEGDTLRETNRNLD KIVDKIVEYQKTTGKKVLWNTANMFTNPRFVAGAATTPFADIYAYCAAQIKHSLEIGKRV GAENYVFWGGREGYESLWNTNMLKEQEHAAQFFHMAKDYANKIGFDAQFLLEPKPKEPST HQYDFDAATTIAFMKTYGLDKDFKLNLEGNHANLAGHTYQHEIRVAREAGMLGSLDANQG DKLIGWDIDEYPSALSETIAAMFEVVENGSIGPKGGLNFDAKPRRQSFAAKDLLTGHMVG MDSFAAGLRVAAKMKEDGVIENILNERYGSFNSGIGKQIDDGKATIEEMEDYVIDKPQKD LLAATHSGHLEQIKDTINHYMIEVLAK >gi|269838489|gb|ACXB01000022.1| GENE 51 53676 - 54833 1023 385 aa, chain - ## HITS:1 COG:SA0041 KEGG:ns NR:ns ## COG: SA0041 COG1940 # Protein_GI_number: 15925748 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulator/sugar kinase # Organism: Staphylococcus aureus N315 # 12 383 4 376 376 244 37.0 2e-64 MVIHKETMRTANERSVLQRIFTESPISKSQIARDVKLNKVTVSQIVNRFIESGLVVEAGA GDSTQQGGRKPNLLQINARYGYVVCIDLGYHELSALAMTISGQKLEIRRINFTDNDISSA ISKIKGLIAELKTEYGEKNLGILISVHGIVYQNQVIYSPFWNMHDVDIAAVLTKSLGITV LLENEANLTAIFERDFSSEGIRNAVSISMHKGIGAGIIMDGELYRGRKGEAGEIGQTIAF ETKDKSLAESQKIEDVASQEAVLDQIKQAKNLDYINLPLIRQMYDDHDPVTLEILQRFEN NIIKLINNVIVSFDPDVLFINAYIFKEFPELLERIRTKFAKISVRDTPIVLSKNVETASL YGGCAQMIQEILGFSKLKLDFKSKE >gi|269838489|gb|ACXB01000022.1| GENE 52 54872 - 56251 510 459 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|90020673|ref|YP_526500.1| ribosomal protein L9 [Saccharophagus degradans 2-40] # 12 450 9 520 522 201 27 2e-50 MEVPHRHTHSLVSWKERISYAVSDFACNLSFQMIGTYLMFFYTDVFGITAAAVGTLFLVA RIVDAIDGPIWGLLIDHTHTRWGKSRPFFLWFSIPFAIFCVLCFTTPNLSMGGKIVWAYI TYIGVDILYSAVNIPITSILPNLTDDTDERVTLSTIRQFFGTAGATIVTVAALPMVNFFG GGNQQKGFFISVLILAIISAVLLLVTFANTRERIQTKNSRKAIPIKQSLKALKNNWPWAI VIFINFVYWLGMQTKSQVTVYFFKYNMHNAGLASLVLGIQVVALVAVILTPACARKIGKR NTMLLGMLLAIVGQLVLSIGASQLSVSIIIIATVIGYLGTGFVSGLIAVMLADSVDYGEW KNGVRAEGIVTSFSSFSAKLGMGIGGAVTGLILSAGGYVANTAQTATALRAIEQNYIWVP IIGFGLSAIALLFYKVDGVEDKMQADLSAKHAAENKNAD >gi|269838489|gb|ACXB01000022.1| GENE 53 56489 - 56827 250 112 aa, chain + ## HITS:1 COG:CAC1085 KEGG:ns NR:ns ## COG: CAC1085 COG1501 # Protein_GI_number: 15894370 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-glucosidases, family 31 of glycosyl hydrolases # Organism: Clostridium acetobutylicum # 1 90 1 91 769 88 46.0 4e-18 MKFTNGYWLTKEGFAVNNPKQVYDYKINDDNVQIYAPYKKINERGDTLNIGMTTVSVTSP LKNVIGIKLTHFDQLPKDPSFDLNDQHVKLATSTDDNTLRNPIWRFISKLPH >gi|269838489|gb|ACXB01000022.1| GENE 54 56772 - 58769 1612 665 aa, chain + ## HITS:1 COG:CAC1085 KEGG:ns NR:ns ## COG: CAC1085 COG1501 # Protein_GI_number: 15894370 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-glucosidases, family 31 of glycosyl hydrolases # Organism: Clostridium acetobutylicum # 7 604 102 692 769 823 65.0 0 MTILCAIQSGDLSANFPIDGSDFEINFEANGQVITKSEPNAEGEITKTDDQTHYMREQLS IGIDELVYGLGERFTSFVKNGQVVDIVQKDGGTGSEQAYKNIPFYITNKGYGVFVNQPET VSFEVASENTSRVQFSIEGESLEYYVIYGPTPKEILSNYTSLTGKPALPPAWSFGLWLST SFTTDYSEKTVMKFIDGMKERNIPLDVFHFDCFWMKGFEWTSFEWDKDAFPDPEGLISRI HDKGLKVCVWLNPYISQKSRLFKVGKEKGYFIKHSDGNVWQWDLWQAGQGVVDFTNPEAT KWYKDYLRELMDMGVDAFKTDFGERIPVEDAVYYDGSDPKRMHNYYTYLYNKAVFDVLLE KKGEGQAAVFARSATVGSQKFPVHWGGDNLSRYVSMADSLRGGLSFLLSGFGFWSHDIGG FEDNASADIYKRWTQFGLLSSHSRYHGNIEYRVPWNYDEEAVDVTRKFVKNKLALMPYLY DEAVRTHETGVPLMRPMFLEFGEDQNTYHLDTLYMLGADLLVAPIFNDQGTVKYYIPGGK WTNILTNQVYDVAKNGEWITEKYDYLNLPLLARQNSILLMNPDAEHADYDYAKAPELHLY QMTEGTHTQRVVDHLGKVLGDIKVTVADGKITLDVSALAALPKAYVHQDDQVKEFTLENA KSTLN >gi|269838489|gb|ACXB01000022.1| GENE 55 58843 - 59487 702 214 aa, chain - ## HITS:1 COG:ECs1906 KEGG:ns NR:ns ## COG: ECs1906 COG0702 # Protein_GI_number: 15831160 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Predicted nucleoside-diphosphate-sugar epimerases # Organism: Escherichia coli O157:H7 # 1 214 9 220 220 164 45.0 1e-40 MGKILILGAYGKTAQIVTERLLAETSLKLKLFLRNASRLADLKDNPRIELIEGDTTDALQ LEAAMQDVEIVYSNVGGVDLAQTTQAIFTAMEATGVKRLIFYSALGARHEVKGKFGEWNE KAISSYLPGFRKSAALIDEHQDINTTELRPAWLTDQDEIDYEITKKGEDFKGTEVSRKSV ADVVVKIIKDPTLYAHESIGINKPDTAGDRPAWM >gi|269838489|gb|ACXB01000022.1| GENE 56 59632 - 61383 1684 583 aa, chain - ## HITS:1 COG:L0199 KEGG:ns NR:ns ## COG: L0199 COG0028 # Protein_GI_number: 15674026 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] # Organism: Lactococcus lactis # 1 555 1 551 567 496 46.0 1e-140 MAKMKAGQALAQVLKSWDVDHIYGITADSINNTVDGLYQERDGLKYIQVRHEEVGSLAAT ADAKLTGKIGVSFGSAGPGATHMFNGLYDAKMDHAPVLALIGQSSTEVMNTNFFQEMNQD PMFVDVAVFHKQVVSAAQIPYVVDEAIRAAYAQKGPAVVIIPDNLSGQEIDYTPIKTPKI YQQPVHSAIDDSAINDTIAALKAAKHPVLWIGRGVAGARQQVIQFSEDFQTPVVTAVPGT GIMPSDHPSFMGSMGRLGTKPAFEVAQKADLILFVGTNFPFARFWPDNVKVIQVNNNPED LGKQRDADMAILADAKEFLDAILAQNVKLPASKWLQAAQKDKANWDAWLEKLSKDDHQGL RAESVMAAIKDHTADNTIFGLDVGNNTEWAIRQIPLNHDQKFTLSGWFATMGYGLPAGMA AKLSYPDRPVVTISGDGGFAMVMQDLLTEVKYEMPIVNVVLENKSFGFIQHEKLVANQAP YGIDLQGANWAGVAENMGAIGLTAMDLPSLAQAFDKIDELQKAGNTKPIVLDAKVVNNDP VDTSFMPLDPQIFDEATIKAFREQYELTDGQPALSEILNELGE >gi|269838489|gb|ACXB01000022.1| GENE 57 61718 - 62032 313 104 aa, chain - ## HITS:1 COG:no KEGG:smi_0438 NR:ns ## KEGG: smi_0438 # Name: not_defined # Def: transcriptional regulator # Organism: S.mitis_B6 # Pathway: not_defined # 30 104 6 81 117 85 53.0 6e-16 MQILLLSMKIAFKKKRVRGSFLAMNSQNDEYIPDKQDLIEIDFGPAVGKEIKKRRPALVI SNWGYSQVTGLVIIAPITHANNHQLKDFFVPVVSAKVSGYVNPL >gi|269838489|gb|ACXB01000022.1| GENE 58 61944 - 62186 238 80 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227530301|ref|ZP_03960350.1| ## NR: gi|227530301|ref|ZP_03960350.1| hypothetical protein HMPREF0549_1480 [Lactobacillus vaginalis ATCC 49540] # 5 59 14 68 89 68 56.0 2e-10 MANDSVKIIKSGNSSILTVPKSITPMATSYRVYQGRDGMIVYAPEKDNPFKNADFIAEHE NSIQKEAGEGQLFSNELAER >gi|269838489|gb|ACXB01000022.1| GENE 59 62186 - 62377 56 63 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MYSALRLVYLQYIRAALNNYFIAYFYIRKPAAFPVFYLKGEPIKAINKQRYIEHFYPAFN SLT >gi|269838489|gb|ACXB01000022.1| GENE 60 62484 - 63386 784 300 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|270291535|ref|ZP_06197756.1| ## NR: gi|270291535|ref|ZP_06197756.1| conserved hypothetical protein [Pediococcus acidilactici 7_4] # 1 300 1 300 300 503 100.0 1e-141 MKKARWKLLLAGLALLGGISLDQNIISANTTIRVGTYNLRAPKKNDTNKQKDLLENDQVE IAGTQEINYKNHRFSGKSKYNTLTNFKDDYFKNIFYSNAIDFAGGGYGIATVSALPLKDS KTVKLYSSEAGKHLQKLKKAYREYNPDKKSTVKNLDKLTAKYGKKLVEPRVYQRSVIEKD GKKIAFYNTHLSYESTKIRQKQFKALAKAMRKDNTPYKVLVGDFNADQNTTEWKTFKKNF NITNGKDGIWRDTFIGEDPTMNVNSIDNIITSKNISISNIHTIKSTASDHVPLVADLTLK >gi|269838489|gb|ACXB01000022.1| GENE 61 63650 - 64543 794 297 aa, chain - ## HITS:1 COG:lin2238 KEGG:ns NR:ns ## COG: lin2238 COG0191 # Protein_GI_number: 16801303 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose/tagatose bisphosphate aldolase # Organism: Listeria innocua # 1 293 1 295 299 374 61.0 1e-103 MLINMNQLLSVAKKNNFAVGAYNVSNAELLKSAVEQCEEDNAPAIIAVHPTEMAYAKDDF FAYVLQRIRNSKIPFVLHLDHGDTLENVARAIHNGFSSVMIDASLEEWQNNVDITRKTVD MCHLVGVSVEAELGTIGQTGNHIKEHLQNGIYTKPEDAERFVDETGVDTLAVGIGTAHGI YPTDVEPKIRIDILKQITDVVDIPLVLHGGSSNPDSQIADAVHNGISKVNISSDYKYAFF KEARKILKEDDGWDPNNLFPKAIEAAKEVVHHKNELFDSLDKADLYQGMDPWRGQLL >gi|269838489|gb|ACXB01000022.1| GENE 62 64581 - 65444 467 287 aa, chain - ## HITS:1 COG:lin2239 KEGG:ns NR:ns ## COG: lin2239 COG0191 # Protein_GI_number: 16801304 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose/tagatose bisphosphate aldolase # Organism: Listeria innocua # 1 283 1 283 284 301 53.0 7e-82 MLVSMKDILSAANRGKYAVLAINCFNLESACATVKAAEKRRSPIIIDLLQEHMEKHIAKE ILLPSVVKMAKLATVDVAINLDHGKSVDYVKECIVDGFTGVMIDQSEGNFKDNVRITKEI MDCALPKNIGVEAEVGNMGAVKNNQFTKQEMYTDPKEAIKFIRRTNVTALAISFGSSHGV MPKDFIPKFNFDIVKEIKKATGIPLVMHGGSGCGKDNIAKAVTVGINKVNVGSDILKAQS EAVYVQQQEDRYMDYVDLLQITMTEAEKAVDEYINVVGSTNKTSVTL >gi|269838489|gb|ACXB01000022.1| GENE 63 65458 - 66546 703 362 aa, chain - ## HITS:1 COG:lin2240 KEGG:ns NR:ns ## COG: lin2240 COG1299 # Protein_GI_number: 16801305 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, fructose-specific IIC component # Organism: Listeria innocua # 1 362 1 363 363 457 71.0 1e-128 MKKLQLKKHAMTAISYMLPLVVASGLLIAIGNLTGGHELTNFNGSYGIPSALTTLGVWGM GLLAPVISAAIAYSIADRPGIAPGLLSGMIAYKIGAGFLGGMLGGFITGWIVLLLVKYIK VPKWAEGLKPMMVIPLISSVIMAILMFYIVGQPIVLATNALTEFLNSMEGSARFIFGFIL GGMAAFDFGGPVNKVASLFADGMLLQGVQQPEAVKVMASMIPPFGVTLSWVLSKLIHKNI YTTQEIDNIKIAFPMGIVMITEGVIPIAAVDLFRMILSCSFGAAVGGGLSMSWGIKSPVP SGGMFIVPAMNKPLLFILALLIGSVVTASLLILLKKNIKTQKSETTVVEEEENIDLDDIK IN >gi|269838489|gb|ACXB01000022.1| GENE 64 66551 - 66871 515 106 aa, chain - ## HITS:1 COG:lin2241 KEGG:ns NR:ns ## COG: lin2241 COG1445 # Protein_GI_number: 16801306 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system fructose-specific component IIB # Organism: Listeria innocua # 1 97 1 97 103 118 62.0 2e-27 MKIVGVAACTSGIAHTYIAREKIVKAAQKLGYEIHMETQGTIGTEDELTATDIKEADFVL LAVDIKVNGKERFTGKKVVEVPTNTAIKAPTKLLKTIVEKLGLNGG >gi|269838489|gb|ACXB01000022.1| GENE 65 66875 - 67351 409 158 aa, chain - ## HITS:1 COG:lin2242 KEGG:ns NR:ns ## COG: lin2242 COG1762 # Protein_GI_number: 16801307 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Listeria innocua # 6 155 8 157 157 142 49.0 3e-34 MEKTILNQVIDEKLIEMNLKSNTKEGVIRELSKRLYEQGNINDLEAFVEDVLLREKEGIT GLGQGVAIPHGKSKSVINTTIAIGKSEHDIPWETLDETPIRVVILFAVRDTDASTVHIKL LQNVARFLSDDNFINDLHNAKTKDDLLKLLKNSKEGDG >gi|269838489|gb|ACXB01000022.1| GENE 66 67320 - 68702 368 460 aa, chain - ## HITS:1 COG:lin2243 KEGG:ns NR:ns ## COG: lin2243 COG3711 # Protein_GI_number: 16801308 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Listeria innocua # 2 447 41 485 485 251 35.0 1e-66 MIKRINLNTGGELVRSKKGRGYKLNYEAFLRNAHILKNFKAYSPIERRKEVLLKLLFKSP EKIGINTLFENFYISESVVSTDIAILKQQLNKKGVLLINRDRTLRVQGNESTIRKLIIRL VNKWEVDDYSSIGTEIPNLAKRDRDFVVGQMDYIEHKLRSPISFPYNVNLFYHLCILIKR YKSKNIKFEFGEPISTVEKEMLENNQKLSAVAGHIVDTLGDYISLKMPPIEKYYIFQYLN SARLISGSKDKELKFINLTRLLLKNISEILKITIQGDGIEEDLSLHVEPMFKRIINGIEI KNPILEDIKLEYPNIFQSTEIAMKKIFREYYSSNVSDDEIGFVAIYIAKFIEQHGHNMKA LIMCSSGIGTSELLKVKIEKELPNLVIEDVISFRMYEKNKEKWNRKVDLILTTIATNEKV VDKPIVLVNAMFTKIDKIRVEKLIERLSQKNGKDNFKPSD >gi|269838489|gb|ACXB01000022.1| GENE 67 68974 - 69450 637 158 aa, chain - ## HITS:1 COG:lin0776 KEGG:ns NR:ns ## COG: lin0776 COG3444 # Protein_GI_number: 16799850 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Listeria innocua # 6 158 5 159 161 94 31.0 8e-20 MENLVLTRIDDRLIHGQVMTAWIKNKGADQVVIVDDGVAKDDFMINVLENAVPDNIAIGI FSKEDAVTFFSEPLEAPTIILAKTPQTLEYMVDNGISIDEIDLGGMGAKEGRERLYHTIS TNAEENESFKRLIEKGVDAFIQIMPQNEKVNLKDILNK >gi|269838489|gb|ACXB01000022.1| GENE 68 69422 - 69865 275 147 aa, chain - ## HITS:1 COG:CAP0066_1 KEGG:ns NR:ns ## COG: CAP0066_1 COG2893 # Protein_GI_number: 15004770 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Clostridium acetobutylicum # 1 137 1 140 157 84 35.0 5e-17 MVKIFLISHGPFSKGLLESIEMIAGPQEGITSLSLERGENPEEFRNRLQESLSENYDAIN GVLVLCDLKGGTPYNSAAYLSQKFKMKLITGMNVPMVITLVTTRTAETSLDELATLATSS ESTNIENVNLNFKQGGRKHGKLSLNKN >gi|269838489|gb|ACXB01000022.1| GENE 69 69873 - 71549 1610 558 aa, chain - ## HITS:1 COG:STM1832 KEGG:ns NR:ns ## COG: STM1832 COG3716 # Protein_GI_number: 16765173 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Salmonella typhimurium LT2 # 307 555 32 285 286 180 39.0 5e-45 MILSAILVAILATISQWWFFAPITRCMTYPLTTGILVGIFMGHPMLGMLAGANIQLVYLG WINAGGVMPSNTMVAGIYGTALTILSSASPKLAVTFAIPFSLLGLLMVQIYQTLNSFWVH RADKALAEGNVNQIRFLNFVPSFIVSLLVYGLPAFCLVLFGKGWATALINAIPESLTTAL EVVGGLMPALGIAMLLSYLGKKSLNAYFFIGFFLAVYLKLDTTAVAIFSAAIAFLIFVSQ TAKKKEDSPKEKKVKRLTLNNRKGATEAVQPAANSTDSASVITTDDYKVQLNKRDLIKTW LWQQSDEAAYNYERLQALGLTNMMLYPIRKLYSDPQKQAEELKKYMVFFNTEPHMVGPII HGVALSMEEARANGQNVSAEDINGVRTGLMGPAAGIGDTVQQGIIFPILASIGATMALDH NFIGPVFFTVVFEAIIYTIGYLMFMFGYKKGKSSVITILKNGIIDKVTNAFSIVGLMVVG TMAATRITVDTPLVWSIGKSTMKLQEILNTLAPGLIPLAITLIVWRLVAKKVNPTWIILG IFIIGIALSYLNLLGVVK >gi|269838489|gb|ACXB01000022.1| GENE 70 71575 - 72288 669 237 aa, chain - ## HITS:1 COG:SPy1947 KEGG:ns NR:ns ## COG: SPy1947 COG0176 # Protein_GI_number: 15675749 # Func_class: G Carbohydrate transport and metabolism # Function: Transaldolase # Organism: Streptococcus pyogenes M1 GAS # 4 237 6 238 243 231 52.0 9e-61 MDLFDIDIYADGAVVDDMVEAKEQLNVKGFTTNPSLMKKAGITDYMKFARKVMSTVGDLP ISFEVFSDDFKTMKMEALKLAELGKNVFVKIPITNTKGESSVPLIKELSEQGVSINVTAI LTIDQVKEVVPAFSENTTNIVSVFAGRVADTGVDPTNLMKESVQVVKESKGNTKLLWASC REVLNIKQAADLGVDIITVTTPVLKKLGMVGKDLKKLSLETVQGFNNDVKDLGFSII >gi|269838489|gb|ACXB01000022.1| GENE 71 72462 - 73484 1002 340 aa, chain + ## HITS:1 COG:PA1949 KEGG:ns NR:ns ## COG: PA1949 COG1609 # Protein_GI_number: 15597145 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Pseudomonas aeruginosa # 6 336 3 329 337 167 32.0 4e-41 MKNKVSIQDIANRAGVSKTTVSKVINNTGNISIATRNKIHAIMDELDYQPNRLASTLKTG HTKLIGILVPDIRNEFYSKIVKKCEGLLFKAGYTTIICNTERDYFQEENYLKVLKELMVE GIIIISATDSINADLASQNKNIVYIDRAPQSDNENIIKSDHYAGAQKATNEIITDGRDPY LILSKTNYSPTRERTHGFIDTLKKKTNIKNPEKHVFRLNVSSNQYLEENTLLEEFLIEHS SDPQPLGIFAINDYIAFMVVKAAAKLHIAVPQKLSVIGFDDASIANIATPTITTIHQNTT LLAEQAVDILLQNIGQSTPTEPQKIIAPIAMVYRESFLKN >gi|269838489|gb|ACXB01000022.1| GENE 72 73577 - 75250 936 557 aa, chain - ## HITS:1 COG:BH3996 KEGG:ns NR:ns ## COG: BH3996 COG3410 # Protein_GI_number: 15616558 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus halodurans # 379 548 18 180 188 121 43.0 4e-27 MANVNDPVVEKISFNKNGLRLLDERNEQLLLDYPTVYIIYAENKDSYSVYVGETNNIKQR TREHFQEMRYAKRSKMFVVGHEHFNKSLTLDIENKLMLYMTGSKAVKNLSNKRANPQYKY FPVEEMNAIFSKIWRQLHRENNQLFPVEKVIEENALFKASPFHKLTEEQMNAEITILNHV KQALNEEKENQLVLVEGSAGSGKTVLLSSLFYLLSGQDEEFKGKSAYMLVNHDQQVKVYN NIAKKLGIQKKFDEKVMKPTKFINNFTDKADIALIDEAHLLWTQGKQSYQGKNQLNDIMD RAKITIAVLDPHQMLRTQQYIEGQTLKKLENRAKKNGHLIKLRNQLRMNAAKDTVKWIKM LVYGNRITNLPRDDKDYELKIFKSPGEMYKAIKEKNRDQSKGLSRMLATFDWEFKEKRDK NHDLYQVTVEDFILPWNLQTKSNDKNLSWAERPETINEVGSTYTIQGFDLNYSGVIIGPS VKYRDGKIVYDPNASANKNAVSNRTLSDGSKVKVYNQLLPNELNVLLTRGVNGLYIYAVD DELRKVLLAAQNQEIQN >gi|269838489|gb|ACXB01000022.1| GENE 73 75465 - 75941 487 158 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|270291547|ref|ZP_06197768.1| ## NR: gi|270291547|ref|ZP_06197768.1| predicted protein [Pediococcus acidilactici 7_4] # 1 158 1 158 158 303 100.0 3e-81 MDTIGIAVIVIAMIAGGMAIKIYQERRYFYLSTFFYKEPQSSNVLFLGKSGRYILNRTKV SEANQQPAKFIIDEGTFTVTADQLLLQSHDGLVITYDNVRNLVMNKNPHVRRQSPAVSDL KTIEMKNHRLIVAQQPLKRLGDHRAKSVVSVRKMLGQA >gi|269838489|gb|ACXB01000022.1| GENE 74 76298 - 76447 228 49 aa, chain - ## HITS:1 COG:no KEGG:Sterm_3699 NR:ns ## KEGG: Sterm_3699 # Name: not_defined # Def: PTS system, mannose/fructose/sorbose family, IIB subunit (EC:2.7.1.69) # Organism: S.termitidis # Pathway: not_defined # 1 49 1 49 159 74 71.0 1e-12 MAANILMTRIDNRLVHGQVGVTWTRAVKANLIVVANDDAANDELQQKLI >gi|269838489|gb|ACXB01000022.1| GENE 75 76822 - 77499 810 225 aa, chain - ## HITS:1 COG:L63770 KEGG:ns NR:ns ## COG: L63770 COG1285 # Protein_GI_number: 15673601 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Lactococcus lactis # 6 125 9 128 223 166 66.0 2e-41 MQAMDLDWCFRLVVAAICGGFIGYERSARLKNAGIRTHIIVALGAALAMLISKYGFYDLL QHPGIGLDPSRIAAQIISGISFIGAGTILVRGAGVNGLTTAAGVWATAAVGMAIGSGLYF IGIAAALLIVASQSLFRDNLVLKYLLRHKHFHCQILLKNDATTLSTIHAIFHDVGFTRNT FSISNVTTERITVELEGILTDKQDIDAVLMKIAKNPAVVEVQRED >gi|269838489|gb|ACXB01000022.1| GENE 76 77616 - 78452 656 278 aa, chain - ## HITS:1 COG:L147291 KEGG:ns NR:ns ## COG: L147291 COG1737 # Protein_GI_number: 15673115 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Lactococcus lactis # 5 275 4 278 283 178 34.0 8e-45 MKSVVFTLKNQLGDFTKKEKQVARFIIKYPQAVIDSNAKQVADQVGTSAATVIRLAKRVC KNGLPELKERLKNETMVNDKFFEEIDPADTLEVMKQKMEYRINHTIEQTNRTVKGGAVRN AAKLVDQADVVYTYGIGASHLVADDLQQKFGRLGKPVAQTQDVHLLAAEMSKGRGVVVLI SNSGETKETLQLLGAARALDLPVVAITRVLSSPLARQSTVVLAHSDSGEGNQLRSAATTS LMAQLYVVDLLYYSFLKLHFEDNVDQLTKSRKIIKSNF >gi|269838489|gb|ACXB01000022.1| GENE 77 78490 - 80466 2115 658 aa, chain - ## HITS:1 COG:L145238_2 KEGG:ns NR:ns ## COG: L145238_2 COG1263 # Protein_GI_number: 15673113 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Lactococcus lactis # 117 460 4 348 348 440 71.0 1e-123 MTDAKVKQIAQAIYANVGGPGNVAKLIHCMTRVRMTIKDPSLVNMAGLKQIDGVMGVVDD DTLQVIVGPGTVNKVAEEMVREVGVKLGDPFPETVMDTSKMTDKEIVEAKAAQVKAAQKA KQKQTPVKRILKSISNIFIPLIPAFVGAGLIGGIAAVLSNLLVAGDISKSWTDLILVLNI IKNGVFAYLSVYVGINSATEFGATPGLGGVIGAVTLLNGMTPEAPLHNIFNGQPMSAGQG GIIGVIFAVWVLSLVEKQLHRWVPDSIDIIVTPTITLLVIGIFTIFLVMPVAGVISSSLV GAINWILNIGGAFSGFALGALFLPMVMFGLHQILTPIHIEMINKTGATPLLPILAMAGAG QVGAAFALWIKCRRNRQLTNLIKGALPVGILGIGEPLIYGVTLPLGRPFITACIGGGIGG AVVGGLGHVGAIAIGPSGVALIPLITNGHIYAYVLGLLAGYVGGFVATYFFGIPKDALVG DAEVNAEVQNEVQDDVPNSSTAVRSGSVTVTTPVSGKIVGLDQVPDPMMAQEVMGKSVAV MPDETDSQIYAPVDGKVTMVADTKHAVGFQDEIGEEVLVHIGVDTVKLNGKGFEINVQAG DQVHQGDVIGKVDWSVIREAQLAPVTLTIITNSSDYQVDKKIGQTDVQATSILMENQR >gi|269838489|gb|ACXB01000022.1| GENE 78 80479 - 81372 964 297 aa, chain - ## HITS:1 COG:L144334 KEGG:ns NR:ns ## COG: L144334 COG2103 # Protein_GI_number: 15673112 # Func_class: R General function prediction only # Function: Predicted sugar phosphate isomerase # Organism: Lactococcus lactis # 1 297 1 297 297 353 64.0 2e-97 MLDLSRLTTETRNPQTMRLDELSTAEVLEIMNHEDQTVAQSVQKALPQITQAVDQIVKNF KQGGRLFYMGAGTSGRLGVLDAAECVPTFGTDPEMVQGLIAGDEKAMTVAVEGAEDSLTL GPADLKKRHLTDKDTVVGIAASGRTPYVIGGLDYARAMHAATISLACNADAEISQHAEIA IEVPVGPEVLTGSTRLKSGTAQKLVLNMLSTVSMIGIGKVYKNLMVDVKPTNAKLVERSK RIIMQATDADYETAATVFEKAHQNVKVAIVMILTGVDETEAQKRLQEAHGFVRKTID >gi|269838489|gb|ACXB01000022.1| GENE 79 81636 - 82433 485 265 aa, chain + ## HITS:1 COG:no KEGG:PEPE_0149 NR:ns ## KEGG: PEPE_0149 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 251 1 253 267 279 56.0 6e-74 MEVKLNYYDEFQQLSSSQIFSDQNRDINLPFIKDARIFSDTTLYLQDISHWRCPGSTLII DTERPPHITNQSTRKLIRNFLRNQPCCDIFLRVVTDYLGIKQARPVVLGTQRVVPLNGTT RRPANWIFAHHLSDFYTDQHHPNSSFLNFDCHDKCLQLQVPLKEAFIRNKLLMAQQMAEL TYLIMKGLSETFGMAVIKPRKEVFARTDHCLPKPVLPAKPLDETFIGLSARLFVTLSESF FDESLMSMEEATHKLKKMSNNLELM >gi|269838489|gb|ACXB01000022.1| GENE 80 82546 - 83667 1117 373 aa, chain + ## HITS:1 COG:no KEGG:PEPE_0148 NR:ns ## KEGG: PEPE_0148 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 257 1 257 376 177 46.0 6e-43 MNETLNRWIKKFKHWINPRDPYQNEFVEDDLYRGRRSAKRRHRRLVMRRWSILIGSIILV CAVLFGGGWGISKTLYASKVDRLQTRIDRLYVDSQHSDLKKNVTKQQIATLKHDVAQLKD RPKKPALQKAQNQAANAYQVRQDYQHLFNRQNRVDLKVTTKKVNHQMKALSANSVPQAFD KKYREHLQKVRQIVQTADKLSRRYNTIIKAHQQNQKISVSTIDGLIKDMRKNQQSQRTVD EQTKLISLRSIVNKENKAAEKAAREAAIAAQKEAEEEAARKAAEESASKEASKSASKAAE ASSKAAAESSSKAAEESAAAASSAEEESSSYDSSYTDGTYTPAYDGNYSSNSYTNPAYYN YTGSGSNSSSTQS >gi|269838489|gb|ACXB01000022.1| GENE 81 83939 - 84115 303 58 aa, chain - ## HITS:1 COG:BS_ydaT KEGG:ns NR:ns ## COG: BS_ydaT COG4876 # Protein_GI_number: 16077505 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 58 1 58 150 66 58.0 1e-11 MPWTKKDYPSSMKNLKERVRNKAIEIANALLQEGYDEDRAIPIAISQAEKWDQDHPED >gi|269838489|gb|ACXB01000022.1| GENE 82 84128 - 85021 990 297 aa, chain - ## HITS:1 COG:BS_yhxD KEGG:ns NR:ns ## COG: BS_yhxD COG1028 # Protein_GI_number: 16078107 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Bacillus subtilis # 1 294 1 297 299 316 55.0 4e-86 MNQPDLKDPRTLYHTDKFPAQQQDTPAIQGKMTPVPDCGETSYVGHDLLLNRKVLVTGGD SGIGRAVAIAFAREGADVAIQFLPGEEADAKEVEHYITSAGRQALLLPADLRDSNAPEEI IQRVVDEFGALDTLILNASQQIAHEKIDDLPIQQIKDSFDVNVVAMLAMVKAAKPHLPAG GAIVTTTSIQAFNPSTQLLDYAATKAAIANMTINLGQQLIEQGVRVNGVAPGPIWTPIQL DHGQPESSIPEFGQDSPMGRAGQPAELAPAYVFLASNLASYVTSQIYGVTGGEPINL >gi|269838489|gb|ACXB01000022.1| GENE 83 85130 - 86035 804 301 aa, chain + ## HITS:1 COG:CAC0294 KEGG:ns NR:ns ## COG: CAC0294 COG0598 # Protein_GI_number: 15893586 # Func_class: P Inorganic ion transport and metabolism # Function: Mg2+ and Co2+ transporters # Organism: Clostridium acetobutylicum # 81 297 96 312 315 81 23.0 2e-15 MPNHHVHLKIETFTSVDSLNNLIQKHQWPSTITAGLQTPEVFPRTMRFKHGEDEIAYLIA VCNLAPTDNILDSQVLLDPLIIVSEPEQLTFLVHEESASATEIQQLYETTLFNSNEGLIA CFLLKIYSNYRVKLAHIKEQLEEIEAQSTETTKNEYLIEIKNIKKEAVILEHTLDTQHQA LERLFKLAEFTDNLADEAMIYNIKTAERQITKLIAIYRDLIEAISGLFTDIMSNHLNHLM KYLDSAALVISVPSLIAGLWGMNTGGLPGEHTKFGFLMMIIVSLVLALVTWRILRSKKYN D >gi|269838489|gb|ACXB01000022.1| GENE 84 86032 - 87942 1560 636 aa, chain - ## HITS:1 COG:SA2304 KEGG:ns NR:ns ## COG: SA2304 COG3855 # Protein_GI_number: 15928095 # Func_class: G Carbohydrate transport and metabolism # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 3 633 10 650 654 622 48.0 1e-178 MYKEKYFEELKKEFNNEDEIVTEIVNLEAILNLPKGTEYFISDIHGEYDGLNHILKTGAG IISEKINLRFPEMAAAEKKELNFVVAYPKFMIEKVQQGKSADELIQWYTTIIPRMIEVTQ YCASKYSRSKVRKTLPKKYAYIIEELLYVEGSPKNKQKYYAQIINKVIELNRAQDFVQSL AATIQKLVIDHIHIVGDVFDRGQKSNQVLELLENAHSLDFQWGNHDVLWLGGYAGSQACI ATLFRIATRYGYIFDLEREYGINLRALFTFADQHYEADPFFYPKTGEFNQPNADLLSKVH QALTIIQFKLEGQIIARQPDFEMENRLFLQQADTGAVEIDGRTYPLSHECFQTVDPQHPY ELTAEEQEVIQSLGYSFRHAPQIKAHMDFILRKGSMYLIYNNNLLYHGCIPLTEDGDFDE FEYRGHRYAGRKLLDFFEEHIRAATSKNDFTETDDTDLMWYCWIGKKSPLFGRTAMTTFE RYFIDDKKTHREGDNPYFMLRDRLSTAHYILDKFGLDERSSYIINGHTPVKVGNGESPIK GGGQILVIDGGLSKAYQKATGIAGYTLINNSYGFQIVTHTPFLGVAELYNSTTGSATLKR VIDRDLPRRNIADTTIGMELKRQIDDLKFLLQNDDN >gi|269838489|gb|ACXB01000022.1| GENE 85 88181 - 90061 1690 626 aa, chain - ## HITS:1 COG:STM3255_2 KEGG:ns NR:ns ## COG: STM3255_2 COG1299 # Protein_GI_number: 16766553 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, fructose-specific IIC component # Organism: Salmonella typhimurium LT2 # 131 454 1 324 350 356 52.0 6e-98 MAKYQIIAATGCPTGIAHTYMAQEALEQAAKKRGVSIKVETHGQSGTDNPFTDEEIQGAD GVIVAADKDVQIERFDGKRLINVSVTKGMKEPDQLIDSILNDDVPVYHASNPASVKSQGS EANGTFWHNIYVDLMNGVSHMLPLVVAGGVLTAISFFWGINSADPKSADFNSFAQLLNTI GGFAMNLMVPVLCAYIAEAIGKRSGLVVGFATGMIAYTNGTGFLGGIVGGFLAGYTVVLL QRLFKALPKSLDGLKQIFLFPVIGVFISGAIMWYMSIPMKDINTGMMSFLKGMENSNPLI LGLIIGMMCAFDMGGPINKAAYLTGTALLAQGNYFFMAGVSAACIAPPLATGFAVLFNRN AYSDNERSAGYVNFLLGSTHITEGAIPFAARNPLINIPIFMVGSAVAAILTYMTRISVPA PHGGFIVLPLVNKPFFWVAFIVIGALISGFLLSLVAGRTKTTERDATDPTTAEAPTDDQE LAQILTVKNIKTAVEVSSRDELLKYLANLAVKNGYSTDAKAVYQKYLAREKAGSTGMERG IAIPHAQDASIKNSAMLVVKLQKPITWQTFDQQPVDTIISFLIPEQDQGNHLKYLSATSK LLMHEQFVTQLKQTNEPTAIYQLFNQ >gi|269838489|gb|ACXB01000022.1| GENE 86 90054 - 90998 730 314 aa, chain - ## HITS:1 COG:SA0654 KEGG:ns NR:ns ## COG: SA0654 COG1105 # Protein_GI_number: 15926376 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) # Organism: Staphylococcus aureus N315 # 1 309 1 305 306 192 37.0 7e-49 MIYTCTLNPAIDLFIETDELKPSKVNRTNSYDILANGKGVNVSFVLKMLGIENQALGIGG GFTNAFIEETLRERGIENHFVHTDQPTRINVFTRVLAEGTEYKEVNAGPQVTPTQVTEFL GLIGKLTATDTLVISGSFSRGVEPQILVKIAQRSQKQGFKLVIDTNYSAVLETLPYQPEL LKPNDEELSKWFGLTKRPTLTDLIECGQQLVARGAQNVLLSLGSQGALLVNATTVLLGNA PKGTVVNTACSGDTMLGTFLAGMEQQKPLDENLKYSIAAGSSTAFRPGLTDFTDVDELSK QITIKVIKGGIENG >gi|269838489|gb|ACXB01000022.1| GENE 87 91076 - 91861 462 261 aa, chain + ## HITS:1 COG:L47971 KEGG:ns NR:ns ## COG: L47971 COG1737 # Protein_GI_number: 15673967 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Lactococcus lactis # 20 261 4 243 244 159 38.0 4e-39 MVFLKKNLHLGAANLKQQKLSNSEKYAWQFIQDHLESIPALSIVALGQQANVSTATIIRT LRKRGFKGYSDFKHHLVEENQGSYTNLARADSDIRSAIMKNEHEVTNTIKMIKIADVEKA VQQIRRAQIIYIFARGFSELIAEELLVKLQLLKKNCQLSDDPNIIQTLATDIRPGNLVII ISLNGETPELVEAARRISQNRAPILLITTNGTSSIGKYASLILCGFKSETTYFPAYEVHS RLPLQVITRVLLDSYVIRTKK >gi|269838489|gb|ACXB01000022.1| GENE 88 91928 - 93133 1155 401 aa, chain - ## HITS:1 COG:SP0101 KEGG:ns NR:ns ## COG: SP0101 COG2807 # Protein_GI_number: 15900044 # Func_class: P Inorganic ion transport and metabolism # Function: Cyanate permease # Organism: Streptococcus pneumoniae TIGR4 # 17 401 12 387 388 194 35.0 2e-49 MNWRKSKIGIFAMVLVVILVGSMMRTPITTIPLILGNLAQSLRVAQGSLGILTTLPLVMF MVFSNFASQILKRMGFKRSLLLALAILVLGSALRMVVTMPTMIGGTILIGVAIAYLNVFM PSFVAAYFPQRIGLYTTLYTFSMMMGSAIFNLITAPIVKLSGWWTMLLILTVVPLLALLT WGLIVPHLPEEMDGRVPTPTDNKAPTKTVIWQNKWAWCFLLVFGCQSVMMYTFTAWMPSL MAYHHVGSGIIGAIMACFSLIGLPVSVFLPQTLTRVSRQIQVGLILSAGVVGLGAAGMLF VQNTAATWFWLIEALLIGYSVNLFFVFVMTMFAMKTASPYQTAQLSGMSQAGGYLIAALG PVLYGMAFSANPVGSAQNVVYLAIVLVVTVAGLAVVKMDQI >gi|269838489|gb|ACXB01000022.1| GENE 89 93298 - 93426 255 42 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MDCNVDEEKLTAEQKAEIERQEELHRAMIKRQLEEFPVKDPF >gi|269838489|gb|ACXB01000022.1| GENE 90 93441 - 94112 548 223 aa, chain - ## HITS:1 COG:no KEGG:LC705_00637 NR:ns ## KEGG: LC705_00637 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 218 1 222 226 249 52.0 7e-65 MTNYEKIQKANPQLTIYQVGDEQFRDYGVVYKQFDLTEINDYMARMAVTAANQYVPKNPA IEQMSVIHEISRDVFGGMALSAGQCVGHCDAFSAVEFHQGSEVNITFSDVIMVLGKRRDL RNYEFHAVDDAQIFYIPQGTVFEMFSDTLHYSPIEVTLAGFKAVVVVLNGTNESLPSSFK THNPMLVKKNKFQLAHATRTDKVKTGILPGVKGPLVQVRPIQD >gi|269838489|gb|ACXB01000022.1| GENE 91 94131 - 95126 1242 331 aa, chain - ## HITS:1 COG:SA1994 KEGG:ns NR:ns ## COG: SA1994 COG3684 # Protein_GI_number: 15927772 # Func_class: G Carbohydrate transport and metabolism # Function: Tagatose-1,6-bisphosphate aldolase # Organism: Staphylococcus aureus N315 # 8 328 7 325 326 377 59.0 1e-104 MKTLTEGKLRGLKALSDENGVISALAIDQRGSLKKMISAASGHEASQKEIEDFKVAISSE LTPYASGILLDPEYGIPAARVRDENAGLLTAYEKTGYDATEPGRFPDILDQWSVRKLKEL GADAIKFLLYYDVDEGEEINERKHAFIQRLGDECKAEDIPFFLELVSYDANNDDVKGKEY AKVKPHKVIEMTKEFSKPEYGVDVLKLEVPVNQAYVEGFAENDADVIYSKEEAAKYYKDQ SDATDLPFIFLSAGVSAELFQEELQFAHEAGSKFNGVLCGRATWRGAIEPFAGESEEVGR KWLQTQGKKNIEDLNKVLAKSATPWFEKVQK >gi|269838489|gb|ACXB01000022.1| GENE 92 95231 - 95749 698 172 aa, chain - ## HITS:1 COG:SA1996 KEGG:ns NR:ns ## COG: SA1996 COG0698 # Protein_GI_number: 15927774 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose 5-phosphate isomerase RpiB # Organism: Staphylococcus aureus N315 # 1 172 1 171 171 218 65.0 4e-57 MIISIGNDHIVTDVKIQLSNFLKSLGHEVIDEGTYDTTRTHYPIYGKRVAEDVADGRADL GVVLCGTGIGISTAADKNEGVRAALVSNLVAARYAKEELNANVIGFGGATVGEHLCEDII KVFLDSEYKETEENKKLIDKIDHIATPNPDQKDNPHFFDEENEKWAEGFYHD >gi|269838489|gb|ACXB01000022.1| GENE 93 95768 - 96196 610 142 aa, chain - ## HITS:1 COG:SPy1923 KEGG:ns NR:ns ## COG: SPy1923 COG0698 # Protein_GI_number: 15675731 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose 5-phosphate isomerase RpiB # Organism: Streptococcus pyogenes M1 GAS # 1 141 1 141 142 126 49.0 1e-29 MKVVVGADKAGFDLKEKVKTYLKGHDYEVVDVSETPQADFVDSSLAVTDKVLNDKIEKAI MFDEYGVGSAMASNKVKGMVTANVVEENTAHMTAMHNGAKAIAIGAGVVGEKLAYNIVQY YLDTEYAGGRHQIRLDMLNKMI >gi|269838489|gb|ACXB01000022.1| GENE 94 96214 - 96981 638 255 aa, chain - ## HITS:1 COG:SPy1712 KEGG:ns NR:ns ## COG: SPy1712 COG1349 # Protein_GI_number: 15675565 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Streptococcus pyogenes M1 GAS # 1 253 1 253 256 209 41.0 5e-54 MLKNERMMEILNAVNSKGTITVNDLVDKLSVSSMTIRRDLDELEKQEKIVRVFGGAQSVN LVSQTEPSYIQKRKIHLAEKNEIAKAVASMIKPNETVFLGPGSTNELVSKYLEIDDLRIV ANSLPVFQRFSDEHDFDLCLVGGTYRRRSGAFVGSLAEEFLRNIKMHKAFVGVNGISNTS VMNADTDEGASQRVALEQSQNKYIVADHHKLDHDDFYNFYDLSNVNGLITDAGVKPAILR RYQQITTVHVAKKIE >gi|269838489|gb|ACXB01000022.1| GENE 95 97213 - 97710 538 165 aa, chain + ## HITS:1 COG:CAC2958 KEGG:ns NR:ns ## COG: CAC2958 COG1762 # Protein_GI_number: 15896211 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Clostridium acetobutylicum # 6 159 5 156 164 141 46.0 5e-34 MSETAIESLFDPKIVYVSSGTTRQAVFKEVADDLVAKGYVKDNFLDNLNSREDAYPTGMD LSVVGSQYPNVAIPHTEANFVYKRRIVPVKLAHPVEFHNMINPTQTMTVRFLFMILNNDP EGQANVLAEIMEFLTHTPWDSLQHLFASDSPEEIFDFLSTNFDEK >gi|269838489|gb|ACXB01000022.1| GENE 96 97739 - 98041 453 100 aa, chain + ## HITS:1 COG:SP0646 KEGG:ns NR:ns ## COG: SP0646 COG3414 # Protein_GI_number: 15900549 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, galactitol-specific IIB component # Organism: Streptococcus pneumoniae TIGR4 # 1 97 1 97 101 118 62.0 3e-27 MIKMLTACGAGVNSSHQIKDAVEEEMKNRGYDVSVDAEMIKDVTPEKMEGVQISLPINHP DLGFDIDIPEIDAGAILYRMPAMAKPVYDQIEAEIKKIQG >gi|269838489|gb|ACXB01000022.1| GENE 97 98226 - 99641 1567 471 aa, chain + ## HITS:1 COG:CAC2956 KEGG:ns NR:ns ## COG: CAC2956 COG3775 # Protein_GI_number: 15896209 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, galactitol-specific IIC component # Organism: Clostridium acetobutylicum # 1 469 1 470 470 579 67.0 1e-165 MNGIIHFANLIFKPIIDLGAAPIMLIVLTLLAWALGVKFSKALEGGIKLAIALTGISAII NILTTAYQAPLAAFVKSTGINLSVTDVGWAPLATITWGSPYTLFFLLLMVILNLIMLALK WTNTLDVDVFDIWHISFTALMAMYFGANLLIAIILILIIGILKIINSDLMKPTFNDLLNA PDDNPMTTTHLNYMMNPIIMLFDKIFDKIFPWLDKYDFDSAELNKRIGFWGSHFAIGCYL GVFIGLVARQDPKEILTLAFTGGVCLQLFSQIGSWFIAAVEPLSQGVTDLANKHLHGRKL NIGLDWPFIAGRAEIWAAANVLAPVMLLEALVLPGNHILPLGGIIAMGVTPALLVVTRGK IIRMIVIGAIEMPIFLWAGTLSAPFITNVAKQVGAFPAGLSAGTKIAESTKEGPIEQFLA YLVGKASTGEITFMIYALLALAAYVLLFWWYAKQMKKRNAAYAAEKAANAK >gi|269838489|gb|ACXB01000022.1| GENE 98 99667 - 99852 217 61 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MIKPEHQTKMSRIIAWAMVVVAASTVPALFGRNVWTFGFQALMCVVAFTQISKKQSAAPK K >gi|269838489|gb|ACXB01000022.1| GENE 99 99940 - 101055 573 371 aa, chain - ## HITS:1 COG:L83620 KEGG:ns NR:ns ## COG: L83620 COG4932 # Protein_GI_number: 15672666 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted outer membrane protein # Organism: Lactococcus lactis # 77 333 1 261 336 150 34.0 3e-36 MRKRWLLGLVIAIIYFWESNQTIAYSSTDWGDQFITNVSLGDAQHNERTSFGLYDKLVGK WEFKIPANVPVKAQDQLTFKVPRNLRLVSNAQFNLKDRHGQVIGRVDAQRGSGKITVRLA RYVTQHDGGIYGNFKLGLLWDYDRVKPASTVAVSWPRLRTEKYKILPHRGPNSRETVYSW GWYDTKDPQLIHWRVRLNYAKQPLRQVTYTDLIGVNQQLVSDSIKVKKVKFDRSGRKFRV LASRSPKRITQYSQLRFTVALGDLNGANLIDFETRATNSMARCFKHQAQLTGVNLNEKNT GKTPVKRASGTGSRLGGIRGVSLRDDDARQPLPLRLDTVLAGDDHQLVIKFGLVTLGLVA CVGWFVYRRPR >gi|269838489|gb|ACXB01000022.1| GENE 100 101079 - 101243 236 54 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0127 NR:ns ## KEGG: PEPE_0127 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 54 1 54 54 61 53.0 9e-09 MYTNVQKNGMLWIGFSWNGLYHGLAIVSIFFAILAVGTILRSMWARTHFDPTWE >gi|269838489|gb|ACXB01000022.1| GENE 101 101246 - 102286 974 346 aa, chain - ## HITS:1 COG:Cgl1012 KEGG:ns NR:ns ## COG: Cgl1012 COG1215 # Protein_GI_number: 19552262 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases, probably involved in cell wall biogenesis # Organism: Corynebacterium glutamicum # 3 335 119 464 489 208 35.0 2e-53 MYVTAIVPAHNEAGNIKRAVRALKKQVDKVIVVCDRCDDDTYQRAQQAGARAFETVQNGG RKAGALNQALENYVDWQQPDQYLFICDADTVITEDWIEHAKRVIAQGDYDAVGSVFYGTA NRNKLIEFCQQLEWYRYANQVRRSKKVFVLTGTASLIRAETLQKVRQQIGTFYREDSITE DFALTLDLKAAGAKMISPLSCYCTTEIMPTWRLLYLQRRRWYLGALQQVTRRRWDKMMLP YVFQQLMLLISVFAFLGLIVFTTYLMLENLMIFSLLWFVIGVIFATERVVTIWDQDFQAK FFALMMLPELMYSLFLQLAYLGALLQLLQGSTGTWNHLNTDQSKEA >gi|269838489|gb|ACXB01000022.1| GENE 102 102332 - 103339 603 335 aa, chain - ## HITS:1 COG:BS_pbpX KEGG:ns NR:ns ## COG: BS_pbpX COG1680 # Protein_GI_number: 16078758 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Bacillus subtilis # 36 326 95 390 391 116 27.0 7e-26 MVHDTYFSDRWATRYVVKARGDVVTNVDYTLTKNRFSGTALIVKDHKVLLHKGYGKQDAT HANDVKTLYNIASIEKSMTSIMVAKLVQLGKLSFDTKLARFYPTIPNAKNITIRDMLTMT SGLEASSDPERALNEKQLTNYYVHHLAVDPRKGWDYDAVNFHLLVGVITQLTHLNYQDSF QQLIKLRRPIKIMSMPDFKNPHVAKSYHKNGRAYPNPAYIYRNEVGTGSFFMTAGDLYRY FAALVNGQIIPLKVVKQLFKTSTQSVYAGGVYQNRLYYRGHGILRGYEPSIIFNRSAGTA VVLLGNRRGRETTMKLANSIYSLINQTPYLGGNSY >gi|269838489|gb|ACXB01000022.1| GENE 103 104159 - 104875 292 238 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0124 NR:ns ## KEGG: PEPE_0124 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 2 230 244 472 481 279 62.0 6e-74 MGLEDEDLRREKQYLTIYCRVNELLDFSIDQCCGPQLQERLQDLVDSQTELLYSTFADAS LEKAIGRIKRALTQTNAKVFSPFYFSETFVDPTKMPFFNETYPAIDAVVKQLLGEVAKRR QLYIDQDVLTQLYYTYMLILLEHLPVKFLSRTVKITVDFSNGPIFTKYIVAQLQQFAPLN IEIMMELTEETDIFLSDQSFAELDCEQMIWESPPLAADWEQLGDMIVRIKNQSVLESG >gi|269838489|gb|ACXB01000022.1| GENE 104 104830 - 105606 493 258 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0124 NR:ns ## KEGG: PEPE_0124 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 225 1 225 481 297 65.0 3e-79 MIEKFNRLLDDEQQLVLQMAELYIHDPEKKLSISYLQSELGVSRHQVLMAFDLLKDTVAS LNLKNIDLAYDGKGIIAMYGLTTSLLKQLLEEMALRSIRLNVFINSQLGIYGTQAQFTKR FGISRATYYRNIMGIRQLFTEEIFNYRSLTEARLRQVLFSVIHHFFNGIDGLPGEYRMEI PTVLEQICTDCGMCLKYTERKRLVNFAFVQAQRIRQGHVLAELADLSPVTTDDEGPDFGL LNQFWGWRTRIYVGKNST >gi|269838489|gb|ACXB01000022.1| GENE 105 105688 - 107307 844 539 aa, chain + ## HITS:1 COG:no KEGG:PEPE_0123 NR:ns ## KEGG: PEPE_0123 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 534 1 557 557 245 34.0 3e-63 MGTNHYQRFYNYGRKWFITSLVGVTIGLNVMLSPISVAASDQVSKSTYPASSPQIAPQEA ASRPPRLDYWGSSASAIASSSADPHHYFWGNKHHHHHWHHHCHATVSVRYVDQSGHLLGT GQAYYPHGPHVGEPYVSQPRSIKNYRLVGTAPDSLPTRGRLNKDGDNGMVTYIYAPIYHF KAKTINETIHYVDKNGQTVAPTHVAQPITFVTVDNLAEHVTKNYFSNTSTNFQMDDQGNP RDSENWHSGTQATFAEVPDPLPHGYQLTDPAKDVVPAAPVTPSSTDLNITVRYQLKKKTA VIRWIDDRTGKIVSFKTVNVDVKHPQTNLTETFNHQDYRLVSSDLPQGPLTFDEIKESGH LYEVHLRSQTPPVLPAAIKPTPSEMPSSSQPVTPPALVPEEQHPTLPVSPLRRATPAIQP AVAERHPQQPSKSLSNSSSRPRPAQSQPRYPVHAGTIPLAVADQQPTPVPDLLARLDLKW YFPRDNYPVLAFDDWNNHVQKIIKLNGDTKNHTQLGQVWYKMSGRLVMGQRVRKNPGSL >gi|269838489|gb|ACXB01000022.1| GENE 106 107852 - 108100 324 82 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGPQIFHRENSQVNNKVVDFEIYKSRQKLRQTAAALTDIFNEVLADKPMFWQSIPVKKRM WQATVVNIFDFMENRTPKFESQ >gi|269838489|gb|ACXB01000022.1| GENE 107 108630 - 108905 329 91 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|270291576|ref|ZP_06197797.1| ## NR: gi|270291576|ref|ZP_06197797.1| predicted protein [Pediococcus acidilactici 7_4] # 1 91 18 108 108 179 100.0 6e-44 MGIDLRELEVYSASEAAMMWGKSQNFVRHLKINGTKVFPEGTIRKFGNSWLVTREGMEEV LGCGPQMTLAQAQRELRKINRERRAKYKHQH >gi|269838489|gb|ACXB01000022.1| GENE 108 109490 - 110965 1162 491 aa, chain + ## HITS:1 COG:no KEGG:LSA0113 NR:ns ## KEGG: LSA0113 # Name: not_defined # Def: hypothetical protein # Organism: L.sakei # Pathway: not_defined # 180 481 4 308 309 139 30.0 2e-31 MDPILLMDKKDQLSFEILSLINRAADAPVNMDHVADKLEVSSYKLNAALSTINTDLRELA PQQNIHINELQKGLWQAQNLSSLVINKIRLVYVLRSPLLPVFEYLMFYENLKTPNQYLQD TPISRSVFYRQIKMLNKIIANYSKDNPKNGKVGEEFHQRLLLFQFYYSLYNGLDSPFPEL NDLVDQIVQACQPYFTHPLRLSQKFKLSIFLRIWILRHRNQNYNETLTVDVDENNDQYQQ LSQRLQRVLGRHFNLNRYEMSYFYGFLLAKGYISDSSNRVISNNFPLATQLTNSLIQWLK DYPITSTLDENTEESLRHDLINVNLQLTSFYIEPSTFVRENSIKFFGKTYPSFDILIHRF LQSIQTEHEITLDAPKWVNLYYGYMFALINNIPARLLKERVYVAVDFSQGDLYTEYVINS LDAFHHANIIIETNISKNTDISVSDIYSQSVKQPQLTWEDPPTPEDWTNLGDIIENVRAK KAFALFNQPIY >gi|269838489|gb|ACXB01000022.1| GENE 109 110996 - 113257 1847 753 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|270291578|ref|ZP_06197799.1| ## NR: gi|270291578|ref|ZP_06197799.1| predicted protein [Pediococcus acidilactici 7_4] # 1 753 1 753 753 1064 100.0 0 MSNKNSSKKFTTLLRSTFAFSLATVGIVSAPLLKNTVLHCRLPLAELIAHADETPDLSSI YYDDDTNMFTSRDKSWSVKVNGRIYSLLINHLGSYRSVTPDTEGVMLFKLDSPPVNATYT LTVGDQVINTGAIHPINLNGHTYYGATLSKTIIQKLVHEVVRTKTSGRIKFTNIPEVLPI SDFPMDVNTILNVSLPTAEYYTDEQSLADHIAGLKLSLTDPDGKVVNKVSIEKDWIETDK NSNLPGTYQYTLSNLGKQALRKKLGDMGGDYWVYHQHYTLGDVGTGKVTVLPKNPTEVTA TVSYVDATTGKTVATDKIKGLINDVGIYQVHLPKGYQLATGQLQKIKYRLTISRSANLTV KVIQASDDSSDSSDSGDNSSSGDDHSSSDNGSSSDGHSSSDDSSSSDDHSSSDNSSSGDD HSSSDDSSSGDDHSSPDNGSSSDGHSSSDGSSSGDDHSSSDNSSSSDDHSSSDNGSSGDD HSSKDNGSSKDNHQSDHSDEPGSASSSNGKASSNNSADSSSSTASHHHSSNHSDHQGSSR NPSHGTPSSSHKTASASPKRGTVTIAFVDENGHVVDQQIYSGWQNTRVPFELSDHILGFL RHGYDLVSPGTPLSQLKFGTGNATYRIGLQKRDTPIFTNALAASKSADQSTANQQPAKKA NQRSHSKNSDHPVLVEELTQRSRLQENLAKQHFSAKHNLVDPRLQSPLAPPDDAANNFFS GSHGGGGNGGEVDPDLGAFFTALAGRVNFTQQT >gi|269838489|gb|ACXB01000022.1| GENE 110 113372 - 114187 1067 271 aa, chain + ## HITS:1 COG:BS_yjqC KEGG:ns NR:ns ## COG: BS_yjqC COG3546 # Protein_GI_number: 16078314 # Func_class: P Inorganic ion transport and metabolism # Function: Mn-containing catalase # Organism: Bacillus subtilis # 1 263 1 263 278 357 63.0 2e-98 MFRHQKELQFEAKPTQPDPTVAKYLQELIGGQYGEMSVAMQYLFQGWSCRGEAKYKDMIL DIATEEIGHVEMLATMVARLLEDAPVEDQQAAMEQDPVVGAVIAGMNPQHAIVAGLGPRP ADSVGNPWSGAYIISSGNLLADFRANLNAESQGRLQAARIYEMVDDPGVKDLLAVLLARD SYHQNQWAAAIKELEEQVGTILVPSDFPREKERKDIAYDFYNFSKGDESSQGAWAHGEAL DGEGEYKWQAEPKAEGQAPDLKPVNPKMYGS >gi|269838489|gb|ACXB01000022.1| GENE 111 114293 - 114850 550 185 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0114 NR:ns ## KEGG: PEPE_0114 # Name: not_defined # Def: RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24-like # Organism: P.pentosaceus # Pathway: not_defined # 1 184 1 184 193 164 48.0 2e-39 MSPKNRTLKAGLDHLLTNGNQKIVFGALKKLKIRPYHQDFEDFLQEARLTYARAYVRFPR NPESDLKEFRMFAYQAIYWQTLNSLKRQTMVKNWQTAELSTDVTNLPRQYRCSSREQQVL ADDLFQRVYAICTPPEKRFLYYRYVKQLSGREIAQREGVSPQSISKRRRKVGQKALKIIA ENADN >gi|269838489|gb|ACXB01000022.1| GENE 112 115123 - 116286 1006 387 aa, chain - ## HITS:1 COG:SP1853 KEGG:ns NR:ns ## COG: SP1853 COG0153 # Protein_GI_number: 15901681 # Func_class: G Carbohydrate transport and metabolism # Function: Galactokinase # Organism: Streptococcus pneumoniae TIGR4 # 1 383 5 387 392 431 56.0 1e-120 MLKEAIAEKFHQIFKTEAEEVYFSPGRINLIGEHTDYNGGHVFPCAISLGTYGAYRGRDD TQVRMYSGNLPDTGIIEFDVNDLEYDAKYKWSNYLRGMMLEIRELSHDYDHGFELYLEGD LPDGAGLSSSASIEMLMGTILNDQFNLRITPIELVKAGQRVENNYIKVNSGIMDQFAVEM GRRNEATFLDTNTMEYDYAPLDLNNNVILIMNTNKPHELVNSEYNTRRAECEEALRRLQT KLNINALGELTKDAFDQYAYLINDETLIKRARHAVFENQRTIEAREALKQGDLKLFGRLV SASHVSLQFDYEVSAPELDMLVDEAWQSPGVLGARMIGGGFGGCAIALIEKDQVDELVKT VGQKYQDRFGYAADFYEAKIVDGPHKV >gi|269838489|gb|ACXB01000022.1| GENE 113 116389 - 117405 1006 338 aa, chain - ## HITS:1 COG:mll3309 KEGG:ns NR:ns ## COG: mll3309 COG0667 # Protein_GI_number: 13472878 # Func_class: C Energy production and conversion # Function: Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) # Organism: Mesorhizobium loti # 2 337 3 338 348 374 57.0 1e-103 MYKASEQRYDNMIYNRVGNSGLKLSAIGLGLWNNFGSVDPLENQKEILFKAFDLGITYFD LANNYGPIPGSAEENFGRIMKSDLHHYRDEMVIASKAGFVMWPGPYGNWGSRKSIIASAD QSLKRTGLDYFDIFYSHRADPKTPVEETALALDQLVRSGKALYVGISNYNGEQTAAITKI FKELRTPFIINQPRYNMFNRDVETDLFPVLEREGKAATSYSSLSQGLLTDKYLQGIDENS RAKKQTIPFLSPVQVEETLETVKKLNEVAKKRGQSLAQMALAWNLRKPVVASVLIGASRV QQVINNVNALKNLDFTDDELMQIDQILAAQSPIDWDAR Prediction of potential genes in microbial genomes Time: Fri May 27 07:05:18 2011 Seq name: gi|269838488|gb|ACXB01000023.1| Pediococcus acidilactici 7_4 cont1.23, whole genome shotgun sequence Length of sequence - 33874 bp Number of predicted genes - 29, with homology - 28 Number of transcription units - 17, operones - 8 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) + TRNA 8 - 80 87.2 # Val TAC 0 0 + TRNA 88 - 160 85.3 # Lys TTT 0 0 + TRNA 217 - 289 90.1 # Thr TGT 0 0 + TRNA 300 - 371 79.2 # Gly GCC 0 0 + TRNA 403 - 488 67.3 # Leu TAA 0 0 + TRNA 497 - 570 67.6 # Arg ACG 0 0 + TRNA 581 - 654 88.2 # Pro TGG 0 0 + TRNA 690 - 763 77.6 # Met CAT 0 0 + TRNA 784 - 857 90.4 # Met CAT 0 0 + TRNA 905 - 994 63.3 # Ser TGA 0 0 + TRNA 1004 - 1077 77.8 # Met CAT 0 0 + TRNA 1082 - 1155 77.6 # Asp GTC 0 0 + TRNA 1160 - 1232 73.8 # Phe GAA 0 0 + TRNA 1255 - 1325 71.8 # Gly TCC 0 0 + TRNA 1334 - 1407 92.9 # Ile GAT 0 0 + TRNA 1411 - 1498 63.0 # Ser GCT 0 0 + TRNA 1519 - 1590 66.7 # Glu TTC 0 0 + TRNA 1619 - 1692 77.8 # Met CAT 0 0 + TRNA 1699 - 1772 77.6 # Asp GTC 0 0 2 2 Op 1 4/0.000 + CDS 2964 - 4154 1624 ## COG0192 S-adenosylmethionine synthetase + Term 4253 - 4289 7.3 + Prom 4246 - 4305 8.1 3 2 Op 2 . + CDS 4330 - 5799 1385 ## COG0477 Permeases of the major facilitator superfamily + Term 5806 - 5876 17.0 - Term 5802 - 5853 -0.2 4 3 Op 1 5/0.000 - CDS 5879 - 6442 591 ## COG0500 SAM-dependent methyltransferases 5 3 Op 2 . - CDS 6435 - 7070 399 ## COG0671 Membrane-associated phospholipid phosphatase + Prom 7336 - 7395 9.5 6 4 Tu 1 . + CDS 7477 - 9894 2726 ## COG0495 Leucyl-tRNA synthetase + Term 9946 - 9988 11.2 + Prom 9908 - 9967 4.3 7 5 Op 1 2/0.286 + CDS 10150 - 11832 1800 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid 8 5 Op 2 . + CDS 11777 - 12562 793 ## COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases + Term 12721 - 12753 -0.9 9 6 Tu 1 . - CDS 12669 - 13508 334 ## PROTEIN SUPPORTED gi|90022317|ref|YP_528144.1| ribosomal protein S15 - Prom 13530 - 13589 7.0 + Prom 13539 - 13598 7.2 10 7 Tu 1 . + CDS 13625 - 14086 663 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins + Prom 14120 - 14179 6.5 11 8 Op 1 . + CDS 14415 - 14699 208 ## Blon_0221 hypothetical protein 12 8 Op 2 . + CDS 14696 - 14989 230 ## PEPE_1752 hypothetical protein - Term 14979 - 15023 8.5 13 9 Tu 1 . - CDS 15073 - 16782 1775 ## COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases - Prom 16808 - 16867 7.1 - Term 17010 - 17053 7.0 14 10 Op 1 3/0.286 - CDS 17065 - 18711 1110 ## COG0366 Glycosidases 15 10 Op 2 . - CDS 18715 - 19437 595 ## COG2188 Transcriptional regulators - Prom 19499 - 19558 11.4 + Prom 19506 - 19565 11.2 16 11 Tu 1 . + CDS 19654 - 21618 1640 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific + Term 21677 - 21725 7.1 - Term 21665 - 21712 5.3 17 12 Tu 1 . - CDS 21742 - 22401 704 ## COG1428 Deoxynucleoside kinases - Prom 22471 - 22530 7.2 + Prom 22729 - 22788 1.9 18 13 Op 1 . + CDS 22889 - 23707 903 ## COG0561 Predicted hydrolases of the HAD superfamily 19 13 Op 2 . + CDS 23709 - 23912 146 ## 20 13 Op 3 . + CDS 23909 - 24127 271 ## PEPE_0653 hypothetical protein 21 13 Op 4 . + CDS 24127 - 24405 444 ## PEPE_0654 hypothetical protein + Term 24456 - 24517 -0.3 22 14 Tu 1 . - CDS 24523 - 24753 206 ## PEPE_0655 hypothetical protein - Prom 24952 - 25011 80.3 + TRNA 24927 - 25010 61.7 # Leu CAG 0 0 + Prom 25243 - 25302 2.5 23 15 Op 1 . + CDS 25356 - 27236 1681 ## COG0367 Asparagine synthase (glutamine-hydrolyzing) 24 15 Op 2 . + CDS 27255 - 28778 1433 ## COG0769 UDP-N-acetylmuramyl tripeptide synthase 25 15 Op 3 1/0.286 + CDS 28778 - 30034 1027 ## COG3919 Predicted ATP-grasp enzyme 26 15 Op 4 . + CDS 30040 - 30747 714 ## COG1794 Aspartate racemase + Prom 30773 - 30832 5.4 27 16 Tu 1 . + CDS 30908 - 31648 617 ## PEPE_0663 DNA-entry nuclease - Term 31657 - 31709 12.4 28 17 Op 1 . - CDS 31731 - 32543 756 ## COG1737 Transcriptional regulators - Prom 32573 - 32632 4.4 - Term 32617 - 32662 2.1 29 17 Op 2 . - CDS 32833 - 33522 875 ## COG3010 Putative N-acetylmannosamine-6-phosphate epimerase - Prom 33630 - 33689 8.7 Predicted protein(s) >gi|269838488|gb|ACXB01000023.1| GENE 1 2061 - 2792 523 243 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0640 NR:ns ## KEGG: PEPE_0640 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 239 1 239 243 199 54.0 6e-50 MDKIKIPKINYHVDRKSYLPAILAVILTSTVWYFSSHFSSEPFKHNLTVQIIFFLASFMA NFITFDQLTNKTNLRLIAPLAVIPVAFFIILLVSKERYVSLLGLLTLVPFVSVFLPFQGK NGVGLISFAFSISVLSPIAFFYIRNAFVSSMFLKTCLLLCLVFLMILFSVFVAHPEQFIY LEIGLLVVIAIFSFVLFKQWSAVLYPMIGILGWYLPRVKLPRNFILLVLIILICVTFLFT AGH >gi|269838488|gb|ACXB01000023.1| GENE 2 2964 - 4154 1624 396 aa, chain + ## HITS:1 COG:BS_metK KEGG:ns NR:ns ## COG: BS_metK COG0192 # Protein_GI_number: 16080107 # Func_class: H Coenzyme transport and metabolism # Function: S-adenosylmethionine synthetase # Organism: Bacillus subtilis # 4 391 5 394 400 566 70.0 1e-161 MSERHLFTSESVSEGHPDKIADQISDAILDELLKNDPDARVACETTVTTGLVVVVGEIST TAYIDIQKVVRKTIKDIGYVGGEYGFDGENCAVIVAIDEQSPDIAQGVDDSLETREGHED RLNRIGAGDQGLMFGYATDETKELMPLPIMLSHHLMQRIAKLRKEQVISYLRPDAKAEVT VEYDDNDQPVRVDTVVLSTQHDPDVTLEQIRKDVIEKVIKEVIPAELLDEKTNFYINPTG RFVIGGPQGDAGLTGRKIIVDTYGGAAHHGGGAFSGKDATKVDRSASYAARYIAKNIVAA GLAKKAEVQIAYAIGVAEPVSVMVDTFGTGKVSEEALTKAVRQIFDLRPAGIIEMLDLKR PIYKQTAAYGHFGRTDVDLPWEKTDKVAELKAFFQK >gi|269838488|gb|ACXB01000023.1| GENE 3 4330 - 5799 1385 489 aa, chain + ## HITS:1 COG:lin0980 KEGG:ns NR:ns ## COG: lin0980 COG0477 # Protein_GI_number: 16800049 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 4 478 2 479 491 389 50.0 1e-108 MKKKQTNVALVTVAIFVATFMSAIEGTIVSTAMPTIVGDLHGVNLMNWVISIFLLTNAIF TPIYGKLSDIFGRKRVFIIGIIIFLIGSMLSGLAHSMTTLIIWRALQGIGAGSIMPVSNT IIADIYSLEKRAKVMGLNGSAWGIASIIAPLLGGFIVDNLSWHWIFFINVPIGIITIILI QLYLKEEVSVHRKKIDYWGSVWLMLSLLGLMYGFQLLGESTASKLILGLSFIIFVVAGAL FIRQERRAEDPIIFLDLFNDRTFVIQNVATMLVSGLLIGFEVYLPTWTQGILGLPASLAG FAVTPSSVLWIFGSFLAGKMLVKLKANQILRISLTILAIGSFLLAVIPASTPFVAFFFIA AILGVGFGITITSTLVISQQLVSKDRIGVATSFNTLAKTLGQTIMMSVFGIIMNGTINMG IAHHPRINMTMMNQVINPQTAKQLPADLLPTLRDILYSALHNIYICGFILIIVAIVINAF SRPRTQKNK >gi|269838488|gb|ACXB01000023.1| GENE 4 5879 - 6442 591 187 aa, chain - ## HITS:1 COG:lin1771 KEGG:ns NR:ns ## COG: lin1771 COG0500 # Protein_GI_number: 16800839 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Listeria innocua # 2 187 3 187 191 167 45.0 1e-41 MLDNAMQYSHRLLAEVVQPGDHVVDATMGNGHDTLFLANLVQSQGRVFSFDIQTAALSAT EARLEKQLPDHQHVQLIQDSHDQLTQYVDTPISGAVFNLGYLPGGDKQIITHSASTIAAV QQCLQLLKVGGRVVLVCYYGHPGGAAELAKLLEFTANLDQHQFTCLRYEFINQVHQPPIL LAIERRK >gi|269838488|gb|ACXB01000023.1| GENE 5 6435 - 7070 399 211 aa, chain - ## HITS:1 COG:lin1664 KEGG:ns NR:ns ## COG: lin1664 COG0671 # Protein_GI_number: 16800732 # Func_class: I Lipid transport and metabolism # Function: Membrane-associated phospholipid phosphatase # Organism: Listeria innocua # 9 195 6 193 217 97 33.0 1e-20 MRFKKFGWLILNWLPLLGLLTLVISVSNRWNWVHTYDRYLQKIIHGWQSPGLTPLVKIYT QLGNAKPFIFISIVILGMLLWRGYDRLAAFFLANVVLGNAINHLIKLWIQRPRPHFRLIT IGGYSFPSGHSVAAMLLFGSLIFITTQTVRSPKWRISWILTCIILMLLLGLSRVYLNVHY PSDVTAGLLLGLVILQTTHWIFYRKKESQHA >gi|269838488|gb|ACXB01000023.1| GENE 6 7477 - 9894 2726 805 aa, chain + ## HITS:1 COG:lin1769 KEGG:ns NR:ns ## COG: lin1769 COG0495 # Protein_GI_number: 16800837 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Leucyl-tRNA synthetase # Organism: Listeria innocua # 1 804 1 802 803 1207 70.0 0 MAYNHKEIEPKWQRYWQKHETFKTVESEQKPKYYALDMFPYPSGQGLHVGHPEGYTATDI MSRMKRMQGYKVLHPMGWDAFGLPAEQYAMKTGNNPKDFTAHNIKNFKRQIQSLGFSYDW SREVNTTDPEYYKWTQWIFEQLYKKGLAYEKETLVNWAPDLMGGTVVANEEVVNGKTERG GFPVYRKPMKQWILKITAYADRLIDDLDLVDWPDSIKEMQKNWIGRSIGASVFFDVEDSD QKIEIFTTRADTLYGATYLVISPEHPLVDQLTTLESKAAVEEYKQAVATKSDLERTDLNK DKTGVFTGSYAVNPVNGKKIPIWIADYVLASYGTGAVMAVPAHDPRDYEFARKFKIDIVP VIGGGNLDEEAYTGDGPHINSGFLDGLNKQEAIDKMLDWLEEHGAGHKKVNYRLRDWVFS RQRYWGEPIPVIHWEDGETTLVPEDELPLRLPATDNIKPSGTGESPLANLEDWLNVVDEN GRKGRRETNTMPQWAGSSWYFLRYVDPKNQNKIADEDLLKEWLPVDLYVGGAEHAVLHLL YARFWHKVLYDLGVVPTKEPFQKLVNQGMILGSNHEKMSKSKGNVVNPDDIVERFGADTL RLYEMFMGPLTESVAWSEEGLNGSRKWIERVWRLMIDDNNHLRDRITMINDHKLDLIYNQ TVKKVTEDYENMRFNTAISQMMVFVNEAYKADALPMVYMEGLVKLLSPIVPHVAEEIWQI MGHEETITYEAWPTYDESKLVQDTVQVILQVNGKVRSKVEVEKDLDQAELEKIALADERI QQWTAEKDIKKVIVIPNKIVNIVAK >gi|269838488|gb|ACXB01000023.1| GENE 7 10150 - 11832 1800 560 aa, chain + ## HITS:1 COG:SP1529 KEGG:ns NR:ns ## COG: SP1529 COG2244 # Protein_GI_number: 15901374 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Streptococcus pneumoniae TIGR4 # 33 559 1 528 529 321 37.0 2e-87 MDKPSEFDTAESQYLGSQPLRENSGNSSSKAKMLEGSAWMTAGSIFSRILGAIYIIPWVI WFGVYSDQANALYTKGYNIYSFFLIAAIAGIPSAISKQVAHYNAINEFALGQRLYKRGLL LSVGTGVVCAAILFFGAPFLNDGDPNVTTVLHALAWAVLVIPTMSLTRGFFQGYQEMGPS AVSQFIEQLARVAYMLVTAYLIMYKNHGDWVYGVAQSTFAAFIGALGGLLVLIGYFVKYR RRLRYLSQHSVNGLAISTTSLYKEIIAQAVPFIIIGSAITIFQLIDQYTFFRIMRSVSDY SATVLNNMFAIFAFNANKLVMIVISLASALAVTSVPILSEAKTRGDRAEISRQVADSILL FAFLMIPSALGMAAVAQPAYTLFYHLSDVGTAILQFNSYVAIVLGLFTVISAVMQGIGEN VLAVKYFVVGMIVKFIFQFPMVAIFSAVGSLISTAIGFAVVNWLILRHINREYGLDYDKI NGFIGKIITYSFGTFFIAFVVTNGLYLVMNPANKVQALIVILVAATLGGLFYVVCVLKSR LADEIIGGRAAGLRRMLKIK >gi|269838488|gb|ACXB01000023.1| GENE 8 11777 - 12562 793 261 aa, chain + ## HITS:1 COG:SP0280 KEGG:ns NR:ns ## COG: SP0280 COG1187 # Protein_GI_number: 15900214 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases # Organism: Streptococcus pneumoniae TIGR4 # 23 259 1 236 240 208 46.0 7e-54 MKLSADVLRAYEECLKLSRGDPVRVDKFLHDMNVGTRSQIRKLIKEKVVFVNDVVAKSGR VKVDPVVDQVRLGEQVITYQQYFYFMMNKPLGVVTATEDRKQKTVMDLFNKVDFRKDLFP VGRLDKDTEGLLLITNNGPLAHQLLAPERHVQKTYEAVVTGQITDPAVKQFADGIVLKDG TQLKPADLTILNYSALDEQTLVHVTLKEGKYHQVRRMFGSLGERVVSLKRISFGPLQLEE GLLPGTYRELSDEEIEKLKTE >gi|269838488|gb|ACXB01000023.1| GENE 9 12669 - 13508 334 279 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|90022317|ref|YP_528144.1| ribosomal protein S15 [Saccharophagus degradans 2-40] # 3 259 226 483 500 133 33 2e-30 MIKMLKINRQTLKSHWPVRQKQSHKGTYGHLLLIAGNAQYGGAGILAASAAIYAGGGLVT LATAKNNFTAVRATLAEIMLIDFTDFDQLSQSLANATGVVIGPGLGTDSTSLAVLNFTMA HIAEGVPLIIDGSAIDLVAQHDLRVSHHPTIYTPHQMEWQRLSGIKIADQSVERNQAVVD QLNATVVLKHYHTEIYAPAAPVAQIMAGNPGMATGGSGDSLTGILLALIAQANSVNEGVR LGTFLHSYTADLIYEHEAVVLPHRLIRRLPAVLKQLSQP >gi|269838488|gb|ACXB01000023.1| GENE 10 13625 - 14086 663 153 aa, chain + ## HITS:1 COG:L103195 KEGG:ns NR:ns ## COG: L103195 COG0589 # Protein_GI_number: 15674218 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Lactococcus lactis # 3 151 5 144 145 91 36.0 6e-19 MDYKKILFGYDGSPESMAAFNRAVEIAKSNHAKLIIASVMKKQPANTASVSLGFGVIETG IDLQDTLDQWKTTLEKLKQDAQQQGLPAEDIEVVFKQGSPKSMLSYTLPKEYDVDLIVLG ATGMGTVAQVILGSTASYVVENAAPDVVIVKNN >gi|269838488|gb|ACXB01000023.1| GENE 11 14415 - 14699 208 94 aa, chain + ## HITS:1 COG:no KEGG:Blon_0221 NR:ns ## KEGG: Blon_0221 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 1 85 4 87 97 70 47.0 2e-11 MEKWISNLSDEELAFIKVFILSSGSLKKMARYYDVSYPTIRTKTDQLIKKIKRLDDNENK KGFKEQIMNLVIEDEISLQAAEKILALREEELKK >gi|269838488|gb|ACXB01000023.1| GENE 12 14696 - 14989 230 97 aa, chain + ## HITS:1 COG:no KEGG:PEPE_1752 NR:ns ## KEGG: PEPE_1752 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 8 86 4 83 89 65 52.0 8e-10 MNSDSLDVIIPLLIVAAQYILSRNIKRKYLGAILPIAFALFMFYQYLTSAGTKDIWGFLI IIIVGESLLLEIWDEQFKETRAKTKQELDKIKAKNSK >gi|269838488|gb|ACXB01000023.1| GENE 13 15073 - 16782 1775 569 aa, chain - ## HITS:1 COG:L169390 KEGG:ns NR:ns ## COG: L169390 COG0154 # Protein_GI_number: 15672148 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases # Organism: Lactococcus lactis # 36 504 2 492 499 235 36.0 2e-61 MSNPRTRWYTTVSIVVMFLFSLTATSAKAQANPADLDGQSATTIAKQLKNHQYDEQALMQ YTYQKINQQNPSLNNVIYQNPSDALKQLQSLQKTDRQQPFYGVPLLIKGLGQAYQGYPNT DGLPFLKKETYPTTKVFVKKLQKMGFVILGETNYPEMGLINITNSNLNGVAHNPWNLLFN TGGSSGGATASVAANEVPIATGNDAGGSLRIPASWSGVIGLKPTQGLIVGDSTTPSVVNF ADTRDITDTQTLLKGLTNPKQAQMLQKVPKNLKDLTIAYSLKSPVGTPVSQDAINAVQQS VNFLRQQGFKVVQKDSPVDGVKMMQTYYLGALEDGANASEKLGRPLTSQDVKDKLVSPMT YALYEASQKAPKSTTNTFMKELALVHRQMTAFHKQYPIYLTPTTATTAPLNSDPAYLPKY VDQMMNIKDLPFQQQMQLIYDSWLHGLTKTPFTQLANLAGEPALSLPTYVSPSGLPLGVQ LQGSQGSDATLLAIGKIFEKEHQFKFLNANYPTSDASSQQTTTTKSSNANSLKQLPQTDE TSVDWPIYVGLILLGSGIMVGYRIYRPRR >gi|269838488|gb|ACXB01000023.1| GENE 14 17065 - 18711 1110 548 aa, chain - ## HITS:1 COG:SPy2096 KEGG:ns NR:ns ## COG: SPy2096 COG0366 # Protein_GI_number: 15675852 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Streptococcus pyogenes M1 GAS # 4 547 5 539 542 618 56.0 1e-177 MNFKDKVIYQIYPKSFYDSNNDGIGDLRGIIKKIPYLTKLHVDMIWFNPFFVSPQYDNGY DIANYYQIDPVFGTMDDFEELVQKLKAQHIEVMLDMVLNHVSTDHEWFQKALAGNQRYQN YFYIRKAKADGSVPNNWTSKFGGTAWAKFGNTDNYYLHLYDKHQADLNWHNPEVRKELFK VINFWHDKGVKGFRFDVINVTGKDTVLRDAPAGVESKFMYTDTPIVQDYLKEMNQAALQD PEIITVGEFSSASVTNGVKYTRPDEHELTMAFTFHHLKVDYDHGQKWTKIPFDFAALKQT LNEWQVGMNKGNGWNALFWNNHDQPWALNRFGDPVHYREKSAEMLATTIHLLRGTPYIYQ GEEIGMSDPNYQSIDDYVDVEALNAYHTLLKSGHSPQDALAIVKSKARDNSRVPMHWDNT KYAGFSKVKPWLKPTNQQNINVDDELRHGEIFNYYQKLINLRKQFKIISEGDYQPFELAH PTVFAYLRTYQSQRLLVLNNFYGKVATISIPEKFTSPDANILINNYSTPERVSNSLQLEP YQSLAILV >gi|269838488|gb|ACXB01000023.1| GENE 15 18715 - 19437 595 240 aa, chain - ## HITS:1 COG:BS_treR KEGG:ns NR:ns ## COG: BS_treR COG2188 # Protein_GI_number: 16077849 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 3 236 4 238 238 188 47.0 9e-48 MESKYDLIEQDLANKIIHGIYPVNTYLPSENELCELYGTSRETVRKALAMLLELGYIQKI KGKGSIVLDVSRFVFPVSGIKSFKELNQSQDMHSRTKLITLEPRLVPNKTFNLDNDDQLN ATYIERLRTVNDEPIIIDIDYILSAVVANIPERAAKNSLYEYFEDELGLDISYATKTITV EKPTEHQRQLLKLPANKDVVVIRSMTYLSDTTLFQFTESIHRADKFSFVDFARRQKMKGH >gi|269838488|gb|ACXB01000023.1| GENE 16 19654 - 21618 1640 654 aa, chain + ## HITS:1 COG:L37906_2 KEGG:ns NR:ns ## COG: L37906_2 COG1263 # Protein_GI_number: 15672409 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Lactococcus lactis # 286 647 3 397 406 248 40.0 2e-65 MKKAENKLKIVAPVKGKVIPLNQVPDSVFAQKMMGEGFGMDPVDKQIVAPVKGTITMVAE TKHAIGIKTKNGVEVLVHLGIDTVELKGTPYHLNVRVGDEVEAGSEMGTWELNDVRNEGK QTTVIVVITNSNEVLEKIEIVNKTIDAGAVVATALLKATGGEQRDSKTKNDRFAKTAETV IAAVGGPDNIKSVIHCISRVRFYLKDINQPDDDQIRRDENVIDIMRAQGQYQVVIGPDVV EVYDAVIDQLGEEYGGEDRPDTTANKPVGPDNRNLLEKLKDGFDELIGVITGSMSPIIWS LAAAGILKGLLSVLTMPQLGEILTPKSTAYIILNAIGDSVFFFLPIMVGFAAAKRIGGDP IIAAVIGGVLVHPTLTPLAGKSLGMLGSFNFQMVQYSYSIFPMILATWLAFKIENWLKKH LPNYLTMIFVPFITILVVSAITIYITGPVIIGMSDGLAKLVSWALVRSGWVSGILIGSFH QVLVIFGLHWGIQPLVINDIATAGHSYLNAIICQTMISQGAATLAVAIKSKKANLKSLSF AAAISAFCGVTEPAIYGVNLRYRRVFISGLIGSAFGGFITGLLHGNMFGFAGSWIGFASF FNPTNPGDLSSFYIFLISSVVSTIVGFVLTYVWGYSDKMEIGQKVDKPVNPGKN >gi|269838488|gb|ACXB01000023.1| GENE 17 21742 - 22401 704 219 aa, chain - ## HITS:1 COG:SPy0121 KEGG:ns NR:ns ## COG: SPy0121 COG1428 # Protein_GI_number: 15674338 # Func_class: F Nucleotide transport and metabolism # Function: Deoxynucleoside kinases # Organism: Streptococcus pyogenes M1 GAS # 1 211 1 212 213 224 53.0 1e-58 MVIITAGMIGVGKTTLTGKIAEYYGTQAFYEPVGDNPVLPLYYSDPKSYGFLLQIYFLNK RFQMIKKALADDNNVLDRSIYEDALFTRENNKEGNITDTEFEVYMNLLDNMMNELQELPK KAPDLMVYAETDFDTILYRIRKRGRDYEQFDNNPELESYYYKMWSAYKEWYEEYDVSPKM KIDLQKYDLSNEDNTKIILSQIDRKLKEIRVEEPVHRAI >gi|269838488|gb|ACXB01000023.1| GENE 18 22889 - 23707 903 272 aa, chain + ## HITS:1 COG:SP1291 KEGG:ns NR:ns ## COG: SP1291 COG0561 # Protein_GI_number: 15901151 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Streptococcus pneumoniae TIGR4 # 2 270 3 268 268 117 32.0 3e-26 MIKLVVSDLDETLVGPTGVSEVNIQAIKKATALGVKFVPNTGRGFQSVQPLLEQLGLRNQ SDEYVISYNGGAIVENKDCQVLQVNALSATQATQIFDVVKQRLDYATHIYTLNHVYVYNP DPEDTAYMTGRGVKVEDYPYKTLEPLAGQPIVKIITMNHDPKKREAIRKEVLGQVDFDLN ATFSSNRYTEFNLGGVDKGKATLALAKRLGIQKDEIMALGDNNNDIAMLSQVGLPVVVAN ATADARRVAKHVTQGDFTSGVAEAIHQFILGD >gi|269838488|gb|ACXB01000023.1| GENE 19 23709 - 23912 146 67 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MPKKTYYRTSLILLILSTIIMVLTWLSDLSQTNKLIIIVIVGIILSWYVQYFSKHLTDGK QRKERKK >gi|269838488|gb|ACXB01000023.1| GENE 20 23909 - 24127 271 72 aa, chain + ## HITS:1 COG:no KEGG:PEPE_0653 NR:ns ## KEGG: PEPE_0653 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 57 1 57 71 67 70.0 2e-10 MKSLRITLPLAVAVILVVATEFFHLSGAPLVISWVVGFLFSMITTTVIEVRLRMKKFVEE QKKEAAKKREEQ >gi|269838488|gb|ACXB01000023.1| GENE 21 24127 - 24405 444 92 aa, chain + ## HITS:1 COG:no KEGG:PEPE_0654 NR:ns ## KEGG: PEPE_0654 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 92 1 92 92 145 84.0 4e-34 MFITTTGINAGYTIKDVVEATASLMLSSEDIDKYNMFDQLFDESKEKIKKKAELSGGDGI IGLKYNSEVVELNGAPKFLVVHAYGTVVVIDK >gi|269838488|gb|ACXB01000023.1| GENE 22 24523 - 24753 206 76 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0655 NR:ns ## KEGG: PEPE_0655 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 7 71 8 72 74 72 52.0 4e-12 MGEIHLNCIVRCRCSTDLKQPFVGKVIKMDGDEAVVTILEYDPCERYVAYEINYTTRVKP CDLRPVSIKVHRSKSN >gi|269838488|gb|ACXB01000023.1| GENE 23 25356 - 27236 1681 626 aa, chain + ## HITS:1 COG:L0095 KEGG:ns NR:ns ## COG: L0095 COG0367 # Protein_GI_number: 15674210 # Func_class: E Amino acid transport and metabolism # Function: Asparagine synthase (glutamine-hydrolyzing) # Organism: Lactococcus lactis # 1 609 1 613 625 486 42.0 1e-137 MCGFVGYVNQTNVNKDTIKSMADRIKHRGPDDEAYFQDEHVSMGFRRLSIIDLAHGRQPM QNNTKTKVLTFNGEIYNYKTVRQELKDLGYEFKTDVDSEVLIHGYDAWGPELLQKLRGMF AFVIYDAEKQEVFGARDHFGIKPLYYYDDGDAFLWASEIKAFLDHPNFKKEFNEELLPIH LSFEFIPSKETMFRNVYKLLPGTYFLHKNGKTETHTYFKFNYDHIDENQTVEDDAKKIRQ IVKDSVDAHMIADVEVGSFLSSGIDSSYVLAEAAKLKPIQSFSLGFKDSKYSELSYSTEF AKEIHQKNTPLYMDGDDYFDILPTIMYYMDEPLSNPSAMQLFYLSKGTRENVKVALSGEG ADEFFGGYNTYLEAFTFERYQKLVPQFIRTGLAKMVSGLPRFHGRRFLMRGAQPLSERYY RVNYVFNQQERSEILAKPELNVDSGAYTQHIFDEVRGKDEMTQMQYFDINTWLPFDILHK ADRMSMANSLEVRTPLVDREVAKFAATMPIKTRIHKDETKVSLRRAAEAELPERVAKKEK LGFPSPIANWIKEDKYRKRIEEAFNSDVAKKFFKPEALMHILEEHVNGKSSMQKIFTIYT FILWYEVYFPEDTTAKTVELVHKTQE >gi|269838488|gb|ACXB01000023.1| GENE 24 27255 - 28778 1433 507 aa, chain + ## HITS:1 COG:SPy0388 KEGG:ns NR:ns ## COG: SPy0388 COG0769 # Protein_GI_number: 15674533 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl tripeptide synthase # Organism: Streptococcus pyogenes M1 GAS # 32 500 38 478 481 321 39.0 2e-87 MKLELGTVRTVLAEHHLLKKIESSTTTVNSGITYDSRKVRPGDMFFCKGNFEPAYLKAAR EAGATTYVAEREYPEGTGMTAIIVTNVTRAMAVLSATYYEFPQNDLFIIGITGTKGKTSS AYFAHAILNQQYPQQVALFSTIDRIVGPRPEDQFKSDLTTPESMDLFHDMRQAVDNGMKY LVMEVSSQAYLRDRVYGLKYDCGIFLNITPDHIGRNEHKDFEDYLHCKLQLMVNSKRCII DADTNRFEDVYGAAKATTDPKQIYLFSADPANGGVDYTIKNAEDDLINNRFTIAAISSTK PALAITGEYDLNVAGDYNQSNATAAIIAAALAGADRDAALKPLNEIVIPGRMEYLAIPGH GVVFVDYAHNYASLRALLKFVKHQYHDGKAIVVVGSPGDKGISRRAGFGKALSEQADVAY LTTDDPGFEDPQDIIAQIMAHIEPGTVEVHQVLDRREAIRQAIVESGPHDIVVLAGKGED PYQKVRGVDTPWPTDMGVAQEVKRGIS >gi|269838488|gb|ACXB01000023.1| GENE 25 28778 - 30034 1027 418 aa, chain + ## HITS:1 COG:L93420 KEGG:ns NR:ns ## COG: L93420 COG3919 # Protein_GI_number: 15674209 # Func_class: R General function prediction only # Function: Predicted ATP-grasp enzyme # Organism: Lactococcus lactis # 6 415 5 408 408 419 51.0 1e-117 MERPVNNFTPILLGSDFNAYGMARAFYEITGRRVQAYASATLAPTRFTNIVNVEIIPGFS EDPVFIESMRKIAKKYQDSDEKVILLGMGDGYAELISKHKEELSQTFVCPYIDYDLLKQL NNKERFYSICDQYNLPYPATKFITKAQYESGETFTSPFGFPVALKPADSVEWLDIHFEGR KKAFRIQSQAELDDVIAKIYDNGYTSDLILQDFIPGDDSNMRVLNAYVDQNHQVKMMCLG HPLLEDPAPSAIGNYVAILPEFNQEIYDTVKKFLESIDYVGYANFDMKYDHRDGKFKLFE INIRQGRSSFFVTLNGYNLARWVVDDYVNNTLADMEPVYANDVIENRKLWLGVPVKVFKK YAKDNEEKKAALDLINRDQYGFTAVYDEDMNFKRSLLIWWMNHNYVKNFRKYFKENKG >gi|269838488|gb|ACXB01000023.1| GENE 26 30040 - 30747 714 235 aa, chain + ## HITS:1 COG:L92665 KEGG:ns NR:ns ## COG: L92665 COG1794 # Protein_GI_number: 15674208 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Aspartate racemase # Organism: Lactococcus lactis # 1 229 1 230 240 229 48.0 2e-60 MKDFFTIIGGMGTPATESYIRLLNARTPAHRDQDYLNYILVNHATVPDRSTYLMDHSQPN PYPDLLEDIQQQSRLNPAFFVIACNTAHYFYDDLQKATEIPIVHMPRETVKQIKKEFPAA KRIGIIGTPGTTTDGIYDRELIAEGYEVVKPTPEIQDLTSKLIFEDIKAQNKVDAQLFYQ ILRLMTEERGAQVVILGCTELSYAQEMAHDHSYPVVDSQSVLVDRSIELALKLRK >gi|269838488|gb|ACXB01000023.1| GENE 27 30908 - 31648 617 246 aa, chain + ## HITS:1 COG:no KEGG:PEPE_0663 NR:ns ## KEGG: PEPE_0663 # Name: not_defined # Def: DNA-entry nuclease # Organism: P.pentosaceus # Pathway: not_defined # 2 246 26 270 270 371 81.0 1e-101 MFLKGNDVHQVTNNLLNQVMPQNTQTTKSVTDSQLSQLTFKSGDPAYIYVNHNRSTLNPK DWKTNRIDYGNLDRLNRTTQATGYLSRANLVKSSTRTSQTWNPTGWHQKRVRINGRSVEI QNRGHLLAYSVTGKFDQNGNFNPRKLGSLDNPKNLATQTAFSNQQTMQIFEERVRDALAK NKRVIYRVSTVFKGNDLMPIGYHSEAISTDGSLNFNVFIWNVQPGVRFDYTTGRSRVDRS MTVSQN >gi|269838488|gb|ACXB01000023.1| GENE 28 31731 - 32543 756 270 aa, chain - ## HITS:1 COG:lin2927 KEGG:ns NR:ns ## COG: lin2927 COG1737 # Protein_GI_number: 16801986 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 1 264 1 263 268 176 36.0 3e-44 MNILEAVEQKYPSLSRQERKIALKVIQHPSQVKKMSIGILAKKAEVSTATVTRFVKKMGC QDFSEFKLGLAEATSTITEDVGNAPLPDQVTNFYNQMITGTWKKINQTALDEAVQLIKNA PRIFVFGLGSSGYNAQELSQRLLRMGINAFAPADSHTMYITSSIMQSDDLVIVLSVSGNS AEVNEATKLAKEHQLKVIAITAFDDSPLATMSDCKLFVQYSDFVDNTRFINSQLGIVYVI DVLSTMLLHDPDYKQHYQQTVEAILSRKLR >gi|269838488|gb|ACXB01000023.1| GENE 29 32833 - 33522 875 229 aa, chain - ## HITS:1 COG:lin2933 KEGG:ns NR:ns ## COG: lin2933 COG3010 # Protein_GI_number: 16801992 # Func_class: G Carbohydrate transport and metabolism # Function: Putative N-acetylmannosamine-6-phosphate epimerase # Organism: Listeria innocua # 1 229 1 229 231 265 55.0 4e-71 MKNRFLDAVKGQLIVSCQALPDEPLHSSFIMARMARAAKMAGAAGIRANSVVDIQAIQDE TGLPMIGIAKTDYPDSPVFITPTMKEMRAVAATGVEVVACQVTGQPRPHDEKIADIVKQF RAEFPDTLLMADTDIMENALVADELGFDIIGTTMRGYTPASKGLNIADDDFAYLKELLQK VHHPVVAEGKIDTPAKLKRCIELGCHSVVVGGAITRPLEIASRFIDAIK Prediction of potential genes in microbial genomes Time: Fri May 27 07:05:42 2011 Seq name: gi|269838487|gb|ACXB01000024.1| Pediococcus acidilactici 7_4 cont1.24, whole genome shotgun sequence Length of sequence - 3192 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 2, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 27 - 1106 623 ## COG0582 Integrase - Term 1155 - 1181 1.0 2 2 Op 1 . - CDS 1249 - 2139 829 ## MCCL_0531 hypothetical protein 3 2 Op 2 . - CDS 2158 - 2718 202 ## THEYE_A0574 hypothetical protein 4 2 Op 3 . - CDS 2743 - 3189 230 ## PEPE_0747 hypothetical protein Predicted protein(s) >gi|269838487|gb|ACXB01000024.1| GENE 1 27 - 1106 623 359 aa, chain - ## HITS:1 COG:L36404 KEGG:ns NR:ns ## COG: L36404 COG0582 # Protein_GI_number: 15672990 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Lactococcus lactis # 1 346 1 371 374 144 27.0 3e-34 MASFEKRRKKYRAVVSVMDNGVRRKVSKTFPTKKEATEWATIMEADKFQNKKIIASSMTF ADWFKMWMENYKKSEVRESTYAAYKSDHNVISKYFGNTTLAELTYPLLQSTLDKIGKKKK QGSVANLVIKIRASLKEAKYEQYIKSDIYSRLKPHGIRVDKKANVLSATEFEKLQNYLYQ NYQNNLVNGAILVALETGMRIGEILALSSKDVSATFKTIVINKSLSHATSKITPPKNKHS IRTIKITKELANVIESYGYHESRIFNVSSDTIRRNLDEIIELLNLTPITTHGLRHSHASY LLYRGISINYVSARLGHANVSITQRVYAHMLKEEKQREQERAMEILSMSPNVPKRSQTP >gi|269838487|gb|ACXB01000024.1| GENE 2 1249 - 2139 829 296 aa, chain - ## HITS:1 COG:no KEGG:MCCL_0531 NR:ns ## KEGG: MCCL_0531 # Name: not_defined # Def: hypothetical protein # Organism: M.caseolyticus # Pathway: not_defined # 18 181 18 187 187 86 42.0 1e-15 MKKSLTLGAVFVSSLILAACGNGNTKKDSSSNKTVTVAKPKEDKYYFKNDELRIHDLKIK ITNYKVIPVGEKGNEYGKKPVLAIWYKATNLTNKEIDPNTAWMATFEAYQDNNKNRENKL NVGSLPDQKFLDTQQENIKKNGTVENAVAYELDDNKTPVTLKATQGVGGKELGTKTFKIK EVLTNASSSASSESSETSSVQSTSTSSNSTSEPKDSNMVSVGAGKYSQYNDPNSQTDTPK EEAELEKQVSRMNQSNNDDDKYGKPGEAQQDLEDSMYQKGQDTMNAYLNGMQNAGN >gi|269838487|gb|ACXB01000024.1| GENE 3 2158 - 2718 202 186 aa, chain - ## HITS:1 COG:no KEGG:THEYE_A0574 NR:ns ## KEGG: THEYE_A0574 # Name: not_defined # Def: hypothetical protein # Organism: T.yellowstonii # Pathway: not_defined # 25 179 201 353 354 67 27.0 3e-10 MFDGLRARFRQKKEEKQRAAKLAQKQYLEKLDKYKNSSLSDLEITIEDVILKKNEVAYYM GQELTSWLEPRKRTKSVSYSGVSGRVKIAKGVYIKTGSIKPMKQTQTTNVVIHQGVMVIT NKRILLINHDEISQITYRNVVQVVPYSDGMAILRSSGKKITLTGFNGEIPSILLTRILTG DTEAHN >gi|269838487|gb|ACXB01000024.1| GENE 4 2743 - 3189 230 148 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0747 NR:ns ## KEGG: PEPE_0747 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 7 148 3 145 145 133 46.0 2e-30 MDNFTEDLMKYLCDYAFENKIGYEFSSKHDPDRSPRSITALRMVFMNNNWPNKLEIPFQF AHEISHVINGDSGSNNFAAPSFYSKEEFNANKRATRILLEYCDLHGFTWDNVIDFMHSFS IPIRAKEAVKAGFKEHVGVPYSVKACEI Prediction of potential genes in microbial genomes Time: Fri May 27 07:06:02 2011 Seq name: gi|269838486|gb|ACXB01000025.1| Pediococcus acidilactici 7_4 cont1.25, whole genome shotgun sequence Length of sequence - 35444 bp Number of predicted genes - 55, with homology - 47 Number of transcription units - 13, operones - 9 average op.length - 5.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 829 - 869 7.3 1 1 Op 1 . - CDS 895 - 1677 832 ## COG0024 Methionine aminopeptidase - Prom 1705 - 1764 4.0 2 1 Op 2 . - CDS 1825 - 1998 218 ## - Prom 2068 - 2127 7.1 3 2 Op 1 . - CDS 2139 - 2357 204 ## gi|270291616|ref|ZP_06197836.1| predicted protein 4 2 Op 2 . - CDS 2374 - 3003 815 ## gi|270291617|ref|ZP_06197837.1| predicted protein - Prom 3051 - 3110 13.2 - Term 3088 - 3122 4.0 5 3 Op 1 . - CDS 3149 - 4504 1479 ## COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase) 6 3 Op 2 . - CDS 4488 - 4727 284 ## PEPE_0983 hypothetical protein 7 3 Op 3 . - CDS 4730 - 5011 236 ## gi|270291620|ref|ZP_06197840.1| predicted protein 8 3 Op 4 . - CDS 5060 - 5206 185 ## gi|270291621|ref|ZP_06197841.1| XkdX family protein 9 3 Op 5 . - CDS 5206 - 5517 392 ## PEPE_0803 hypothetical protein 10 3 Op 6 . - CDS 5517 - 6269 742 ## gi|270291623|ref|ZP_06197843.1| predicted protein 11 3 Op 7 . - CDS 6284 - 8104 1321 ## PEPE_0801 phosphodiesterase 12 3 Op 8 . - CDS 8108 - 8554 600 ## PEPE_0800 hypothetical protein 13 3 Op 9 . - CDS 8538 - 11513 2574 ## COG3953 SLT domain proteins 14 3 Op 10 . - CDS 11513 - 12277 449 ## PEPE_0798 hypothetical protein 15 3 Op 11 . - CDS 12277 - 15297 2507 ## COG5283 Phage-related tail protein 16 3 Op 12 . - CDS 15281 - 15601 266 ## PEPE_0796 hypothetical protein - Prom 15621 - 15680 1.5 17 4 Op 1 . - CDS 15706 - 16047 357 ## PEPE_0795 hypothetical protein 18 4 Op 2 . - CDS 16119 - 16559 385 ## PEPE_0793 hypothetical protein 19 4 Op 3 . - CDS 16550 - 16750 162 ## PEPE_0793 hypothetical protein 20 4 Op 4 . - CDS 16763 - 17170 218 ## PEPE_0792 hypothetical protein 21 4 Op 5 . - CDS 17171 - 17512 310 ## PEPE_0791 hypothetical protein 22 4 Op 6 . - CDS 17505 - 17810 339 ## PEPE_0790 hypothetical protein 23 4 Op 7 . - CDS 17815 - 18189 357 ## PEPE_0789 hypothetical protein 24 4 Op 8 . - CDS 18201 - 18434 202 ## PEPE_0788 hypothetical protein 25 4 Op 9 . - CDS 18485 - 19303 1103 ## LACR_1137 hypothetical protein 26 4 Op 10 . - CDS 19303 - 20019 711 ## LACR_1136 hypothetical protein - Prom 20050 - 20109 2.3 27 5 Op 1 . - CDS 20124 - 21107 543 ## COG5585 NAD+--asparagine ADP-ribosyltransferase 28 5 Op 2 . - CDS 21076 - 22371 1092 ## PEPE_0783 phage portal protein, SPP1 GP6-like - Prom 22431 - 22490 1.8 29 6 Op 1 3/0.000 - CDS 22492 - 23697 968 ## COG1783 Phage terminase large subunit - Prom 23771 - 23830 3.9 30 6 Op 2 . - CDS 23832 - 24323 473 ## COG3728 Phage terminase, small subunit - Prom 24343 - 24402 5.8 - Term 24781 - 24811 -0.5 31 7 Tu 1 . - CDS 24968 - 25411 287 ## LGG_01120 hypothetical protein - Prom 25439 - 25498 2.8 32 8 Tu 1 . - CDS 25611 - 25799 277 ## - Prom 25858 - 25917 4.1 33 9 Tu 1 . - CDS 25986 - 26234 215 ## PEPE_0773 hypothetical protein - Prom 26348 - 26407 3.8 34 10 Op 1 . - CDS 26416 - 26628 169 ## 35 10 Op 2 . - CDS 26621 - 26866 304 ## 36 10 Op 3 . - CDS 26867 - 27160 247 ## PEPE_0768 hypothetical protein 37 10 Op 4 . - CDS 27157 - 27324 193 ## 38 10 Op 5 . - CDS 27327 - 27698 401 ## PEPE_1013 hypothetical protein 39 10 Op 6 . - CDS 27685 - 27834 172 ## 40 10 Op 7 . - CDS 27831 - 28277 103 ## COG4570 Holliday junction resolvase 41 10 Op 8 . - CDS 28225 - 28845 645 ## gi|270291648|ref|ZP_06197868.1| predicted protein 42 10 Op 9 . - CDS 28845 - 29072 316 ## PEPE_0764 hypothetical protein 43 10 Op 10 . - CDS 29062 - 29385 248 ## COG4570 Holliday junction resolvase 44 11 Op 1 . - CDS 29499 - 29915 327 ## PEPE_0761 hypothetical protein 45 11 Op 2 . - CDS 29915 - 31147 1162 ## COG0305 Replicative DNA helicase 46 11 Op 3 1/0.000 - CDS 31137 - 31967 376 ## COG3935 Putative primosome component and related proteins 47 11 Op 4 . - CDS 31988 - 32413 438 ## COG0629 Single-stranded DNA-binding protein 48 11 Op 5 . - CDS 32406 - 32612 241 ## 49 11 Op 6 . - CDS 32615 - 33250 591 ## gi|270291655|ref|ZP_06197875.1| predicted protein 50 11 Op 7 . - CDS 33260 - 33472 379 ## - Prom 33549 - 33608 5.7 + Prom 33542 - 33601 7.5 51 12 Tu 1 . + CDS 33621 - 33902 351 ## Cbei_4995 hypothetical protein 52 13 Op 1 . - CDS 33899 - 34120 278 ## PEPE_1026 hypothetical protein - Prom 34141 - 34200 2.5 53 13 Op 2 . - CDS 34217 - 34423 335 ## PEPE_1028 hypothetical protein 54 13 Op 3 . - CDS 34492 - 35226 735 ## COG3646 Uncharacterized phage-encoded protein 55 13 Op 4 . - CDS 35240 - 35443 148 ## PEPE_0749 hypothetical protein Predicted protein(s) >gi|269838486|gb|ACXB01000025.1| GENE 1 895 - 1677 832 260 aa, chain - ## HITS:1 COG:lin1821 KEGG:ns NR:ns ## COG: lin1821 COG0024 # Protein_GI_number: 16800888 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionine aminopeptidase # Organism: Listeria innocua # 1 251 1 248 252 317 61.0 1e-86 MITLKSEREIEGMRKAGAVLAGMHIGLRDVIKPGISSWDIEKFALRYLDEHGAVPEEKGF EGYEYATCVSVNNEVCHGFPRKDLILKEGDLVKVDTVVSVDGYVVDSCWAFAVGEVSDEV KKLMEVTKKALYLGIDQAVEGNRIGDIGHAIQTYVEDEMGYGDVREFVGHGIQPTMHEDP DVPGYGKAGHGPRLRNGMTITIEPMVNTGSWQCDTSAPDGWTVTTMDGSLSCQYEHTLVV TPDGPKILTSQDPVGDAKYL >gi|269838486|gb|ACXB01000025.1| GENE 2 1825 - 1998 218 57 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVGILDKYLEAHGLTRYRLAKESGISQTTWFNVNSRPLDRWTVKQVRALAACNGKVN >gi|269838486|gb|ACXB01000025.1| GENE 3 2139 - 2357 204 72 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|270291616|ref|ZP_06197836.1| ## NR: gi|270291616|ref|ZP_06197836.1| predicted protein [Pediococcus acidilactici 7_4] # 1 72 1 72 72 129 100.0 9e-29 MGVFDEYLKQHGYTRYMLAKKAGINESGLQKAAKAEKLENISTRVMLLTSENLNIPIGEV ITDLYNLFKNKE >gi|269838486|gb|ACXB01000025.1| GENE 4 2374 - 3003 815 209 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|270291617|ref|ZP_06197837.1| ## NR: gi|270291617|ref|ZP_06197837.1| predicted protein [Pediococcus acidilactici 7_4] # 1 209 1 209 209 299 100.0 6e-80 MKLEDFYQIQDLKEQQQELAQAIINTEITNVEDAKELVANDFQADENSAYEGFDPDFDDT EEVENLAQEEITDLDKALEVESIYFDGQSFINNEVEEYEEVSEQLEDLIDGAEKIIKIVD DIESKGFTIKCVDHSSKSLSTYLTLPIDELDDFMDEYLPDDSSFELKEDEKYFGVRISDH DSGMKFLKDQFRYIVYPNNYLNLDFNEFY >gi|269838486|gb|ACXB01000025.1| GENE 5 3149 - 4504 1479 451 aa, chain - ## HITS:1 COG:SPy1006 KEGG:ns NR:ns ## COG: SPy1006 COG3757 # Protein_GI_number: 15675010 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lyzozyme M1 (1,4-beta-N-acetylmuramidase) # Organism: Streptococcus pyogenes M1 GAS # 136 278 214 342 444 134 51.0 4e-31 MNQKNKLKWVVAIAAAFFVGVSTATLASANAGGATNNQYTNVQHKAVVKHPANAKAKTGQ KQAPKAVVSTRSQGVDWSKYQGYNGVKGYKNDQFAIAQIGGSYGGTFIDQPTYNSQVASA KSKGMRAHTYIWYGVGDSKALGKQCLDYYLPRVKTPKGSIVALDYEDGAKATYWNGSRYI STLAEKEANTDAIIAGMQQIKNAGYTPMYYSYKPYTLAHVDYKRIVQKFGTCLWIAGYPD YLVRSTPYWGVFPSMDGVAIWQFTSTYINGGLDGNIDLTGITHNGYDGKQTKPVKPSNKK HVDVTYAMHQRNGHWLSPVKNAGSGTNGFAGMPYSAHDMLYIEASHGSIKYRVHTIEDGW LPWVHKGNKNDTVNGVAGIKGHTIDGVQMYYTTPKGETYQQAYYRSQSTRRAGYLGTCAD NGSVAGYDSWAGMYGEPLDRLQISINNHSDF >gi|269838486|gb|ACXB01000025.1| GENE 6 4488 - 4727 284 79 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0983 NR:ns ## KEGG: PEPE_0983 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 11 74 14 81 125 70 60.0 1e-11 MEKVKKINWHDGKLWAGLISLLIVLVQQLMVAFGFTYPVDWQNIVGIINTILTILGMLGV ISDTTLVDNSKEENVESKK >gi|269838486|gb|ACXB01000025.1| GENE 7 4730 - 5011 236 93 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|270291620|ref|ZP_06197840.1| ## NR: gi|270291620|ref|ZP_06197840.1| predicted protein [Pediococcus acidilactici 7_4] # 1 93 1 93 93 177 100.0 2e-43 MLLGLSWGEWASITTVIIFMAGVVSLLFKYVIFGPFQEDIKDLNKNFKTLNDNLREIRIS IEELDKRVDEHDRRLDRHHERIKDLQNKVWGGN >gi|269838486|gb|ACXB01000025.1| GENE 8 5060 - 5206 185 48 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|270291621|ref|ZP_06197841.1| ## NR: gi|270291621|ref|ZP_06197841.1| XkdX family protein [Pediococcus acidilactici 7_4] # 1 48 1 48 48 89 100.0 8e-17 MTTFEQCKIFWSWGNHDLDYYKSYVGFGLITESEYKEITGEDYPAPEA >gi|269838486|gb|ACXB01000025.1| GENE 9 5206 - 5517 392 103 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0803 NR:ns ## KEGG: PEPE_0803 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 96 1 98 113 65 39.0 6e-10 MQLLLDDKNVILGFAKIGTMDGATEYTGPVPDDFELKFVPRYYMFKDDGIITNPDYVPTK PNVPTGPTSLQQVVMQQAMTIAQMQSIMMQQNKDIAELKGADA >gi|269838486|gb|ACXB01000025.1| GENE 10 5517 - 6269 742 250 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|270291623|ref|ZP_06197843.1| ## NR: gi|270291623|ref|ZP_06197843.1| predicted protein [Pediococcus acidilactici 7_4] # 1 250 1 250 250 497 100.0 1e-139 MEEDLKKHVERHDRQISEIKNLYLAPATEHHLGTMSAQDKRDLTHATGVRQWIYDKTSVL DLPKGHYETLWSNLTDTPILANETMENAPYCEIDVESATTSKGTRKQFWFYASGTGKVWY RNIHSRVGNVPNAWEQLVKYTTLWSGSIHGEGTLTLVDDLKNYDALEFGYSVLGNVRYQK MRIANEMVLRDSNLPDDDNNMWTAFYETTLDKIDDTHLVIKHNKGILRGGTGDIAVDNNQ IVIASVRGIR >gi|269838486|gb|ACXB01000025.1| GENE 11 6284 - 8104 1321 606 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0801 NR:ns ## KEGG: PEPE_0801 # Name: not_defined # Def: phosphodiesterase # Organism: P.pentosaceus # Pathway: not_defined # 1 606 1 609 609 451 43.0 1e-125 MSMYLTFTIGKDKRNLVDDITNFHIDNSTSTNPQWLQARQNEDGMRQVFVTVKNEDGSPF NLTDCNYWFEGKLPDGIHKIIDARHGVTLDAQNGQFRFDMPKQAFTVAGSYVQAFFRIVR NGESLTTLEFDLTVLADLVYNDLVPSDYITPFEDLYGKLQDYITKANGDFEAAMAQWKKD VATLIAQLTTDVGSINLTIEEIKTQLGALEEKIKADGLLTQAEFDTAVADLKEYIAEQLA IVNTPFKYNPSNDIGGDVKSDYLPNFISKIDQTRFNIAVITDPHYQDRYLGEGEKIDYPY SKYSINHLADFLELANHVDLAISLGDNNGGNNVEKARNYADEALYNDRLLYTSTEGDVAL IPGNHDDGSPVMYSRNIPDGIIKEAELKELFATTTPRFGEKRDGDSLYFFKDYDEHKIRV ITLWTNDVPEDVLASDGNLKYPRWLWHGFRQQQLNWLANTALKVPTGYQVIIMAHAPLSA DNWVDDDPNVHYVNHDLVSGIINAFVTGSTYVNKGTVKDWEASVNCDFTSQGAGTLIGWF DGHKHREQIDVHNDFKQVEMVNDFPPKSTDVGTEHEGAMTVISIDSANKQVDLLGWGRAS NRSMTY >gi|269838486|gb|ACXB01000025.1| GENE 12 8108 - 8554 600 148 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0800 NR:ns ## KEGG: PEPE_0800 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 148 1 137 137 157 70.0 1e-37 MAEVYKDVTKVQKNAQKVAEIADIIRHAKIGTDVREAMAQGFETIDNSEVVNHLIDDVDK LTDEIIGYRADVKNLTDTVQKSITDSQTGIENIAKQNQEAIQQVLDDNQSKLDMFNKNWQ DKINRIILGIDEPTLEKIIDEKLNERGV >gi|269838486|gb|ACXB01000025.1| GENE 13 8538 - 11513 2574 991 aa, chain - ## HITS:1 COG:BS_yqbO_3 KEGG:ns NR:ns ## COG: BS_yqbO_3 COG3953 # Protein_GI_number: 16079656 # Func_class: R General function prediction only # Function: SLT domain proteins # Organism: Bacillus subtilis # 292 348 8 64 223 63 50.0 2e-09 MYRVIAYDEPTDKAGYIIHDPIVGLVASEGKLTISSSQTNTLSLTLNQANKLFGKVRPMH THVEVYDSGNSELLFRGRALKPEREMKINGQFIQTYDFEDIDSYLIDSVQRYIEIANATP EEFLKKLIEEHNSQVPEYKQFTVRNVTVTNDKDNTLRKVDYQTTKDAIKKLLTDSIGGSI IVEYKDGKNYLDYLKSPGQDHSMEAPLKIAENMQSAKVAIDPSKVITRLIPLGAQIETQK PDEEHDDSSDDGSKLSGPMHAINGDWGPAIKFAAKCMKTSVSDAEVSTIKDVIQHESNGS ETVVNNWDSNAAAGHPSKGLLQFIEPTFNAYAIEGYTDILKGFHQLLAMFNDSNWENDVH EGGWGPTGNRRYDKLPVEIVPSGGGWGSPFPSAGHGTFSGGQLFGVHAGGEFRQNGFHDG LDFGSVDHPGSDVHAVHGGKVTHKGYMGGLAYYFVTHSDDGYNVVYQEAFGSSSDIKVKV GDYVKTGQVVGTRTTDHLHVGVTKKNFNYAVAHSFTNNGTWIDPEPLIFGGSKQTRSLIE ENSISTKTDDSSSPLAKQELDIQAGIDLFNKAKAAHLEYAMDYRRADILTDQKHADCSSF VSFFVELAIHETDRTLYNAETLHGFLKKHGYILHYEGTNKTLPAMQTGDVIIMGKKGQSA GAAGHTAVMKDADTVLECSTGWSGGYPDGADVFEHGKSSNPTLDDWFSHDANNWSGEWYW YLYRFSGNIPEQDSGDQKGGTIKSGVRYTIAPVNDGKDYLDIPEFQNEFGIINGAVTWDS IKDPVQLLAKGKAWIKAQKASINTFTVSAIELNEYERFKVYDRYLFINPYVAEQQLLTVI GKEIDLNKPHKSTMTFGDKTTKLTDYQNDFKNISKDVKSLKSTISTIGSDISSMRAGAFS GNLATISEQLGAVDVPQLKKDYEGTQKDIEDSKTRLDTAERDLKTVKQDDETTKQTLAEY QQTLAKYQQTIAGLDERLKKLEGGNADGGGV >gi|269838486|gb|ACXB01000025.1| GENE 14 11513 - 12277 449 254 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0798 NR:ns ## KEGG: PEPE_0798 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 254 1 254 254 486 92.0 1e-136 MQYSFRDLQPTNEDEYEDIPTEGFVFGSFDSRKAGWWVVSREAPTPKENEIVEQVAYKQG VYDFSVLNGERFFDNREITYKIVMPLSVYHERKIFEEEIKRQLMTVGISNLVDTHEDGYY WSGKCKSVEVDDDEEKGMLTATVVFDCYPYAYTNNLEGADIWDDVIFDHWVWQPVKFNVT ESMDVTLENIGSRPVICHFAVTGKVTVKGPGFDGYELTEDNADKATITMPLGKNKFTLSG SGTIEFKFRREEMI >gi|269838486|gb|ACXB01000025.1| GENE 15 12277 - 15297 2507 1006 aa, chain - ## HITS:1 COG:lin2383 KEGG:ns NR:ns ## COG: lin2383 COG5283 # Protein_GI_number: 16801446 # Func_class: S Function unknown # Function: Phage-related tail protein # Organism: Listeria innocua # 28 467 65 501 1601 126 27.0 3e-28 MGETYSVTAVLSAIDKNFSSVMQKAASQTASFSDKVKSTMTGVGTAMGITGTAITAMGVK SVESFGKFEQEINKAAVIAGGSSKDIKGLSDEAAKLGSTLPISAQDAAAAMTEMARNGAS VKDLKNDFPPIARAAASAGEDLSNTATVVQQSMNLWGGGMKNATKYSAILTETANKSNAT IGDMQQVLADVGGTATNMGMSLSDVSTAAGIMTNSGIPAAQAAQELNHALLAMEAPSNVA RKEMEALGLKFSDANGKAKPLPTILREVAKATDGMGDAQKAAALKAMFGTAGMNAMMPLL KSVNGQAKSGNTDWNTFAAALDKAGGSYQKASKYLQGSTNQMQKNVGSQIDQLKDSFTSL SISANQSSSKGIQQFLIKVQDLVGHLTTSNDKLSVFVRNMIALAPVIGPVVAVIGGLLIV TAKVASAVGTLAKGFLAVGKGVIGLVSKLIGVATGNTAVGATSAGAATGEKAVGESAEKS AGQLIAMGLAVLEIGAGIALALGGLALLVLSITQLAKQGMNGVIALATFGATVAVLAGVF AVLGPVLTASAVGLLAFSVAIISAGAGVALFGAGMLAMGAGLALAGQGVTALVNAFILLG NNISLIIPIMSSIGAGFSALLTGMLNAVITNIPLIGQTFIALGQTILNVISTLSLQIIQT VMNLLLLLVNTIVTYTPIFTAKIAQLIISMLNTITTYLPRIILAGTNLIVALLNGIALAM PRIITAAVNVIVAFINGIANNLGRIINAGINLLAKFIMGIVNAIPRLASVAVQAVMKFVY GVGSALGQVLGSGQRLINMFVRGVIDGFGKSQSSGKGNANKVDSGIRSVSLLDVGKFLIQ GFINGMGSMGSDIWNAAVGIANKAKNAIKSALGIHSPSRVMKDEVGKWIPAGIAVGMNKN VDWITSAAKNMVKAATISIPSPNFEDFRNGFNRIQSLSSSAFSGSVNGSMTLNASTLDQQ NNALLRRIADKDTNLYMDSDTLVGTTSDKFNGQLGATSNNDERWGW >gi|269838486|gb|ACXB01000025.1| GENE 16 15281 - 15601 266 106 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0796 NR:ns ## KEGG: PEPE_0796 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 15 106 1 92 92 145 95.0 4e-34 MPFSEYYLRLEAYYMQKSEQRQNLALQAFFNQMVQATTGSDKNPKPKYKNLDDMYNLDDE KANIRHVFEGLPVKKKKADINELTANRWDEWKKIQKERRERNGRNV >gi|269838486|gb|ACXB01000025.1| GENE 17 15706 - 16047 357 113 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0795 NR:ns ## KEGG: PEPE_0795 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 113 1 113 113 199 96.0 3e-50 MKITINGKEQELNFGVRFVRELDKVAGMEAGGMSLGMGLTKSLPALSAYDPAVLSDVIYS ATFRNSPRVSRNDVDDYLDSLTSVKEFEKLFDDVSKEVKKANVLKVALKNMQA >gi|269838486|gb|ACXB01000025.1| GENE 18 16119 - 16559 385 146 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0793 NR:ns ## KEGG: PEPE_0793 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 131 63 193 194 177 69.0 8e-44 MELEFYNNSSVPADEFYRSILKNEKVEGWIVDIDRTNKDGMNFAWYVQATISDDETEAKT GDVSERTIKFSVNGTPKQGWLVLTKDQQEQVDYVFRGLTAITTGEDGTEKNGGTAWQDGD EGTYVPKDDSSTPTATPTNNGASTTA >gi|269838486|gb|ACXB01000025.1| GENE 19 16550 - 16750 162 66 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0793 NR:ns ## KEGG: PEPE_0793 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 5 51 3 49 194 69 72.0 4e-11 MANTTEVVQGNSLKMFYRRLSWAKNREAELVPYQTSVKLSFKRDSDSKKLRTEIFRLARV WKLNWN >gi|269838486|gb|ACXB01000025.1| GENE 20 16763 - 17170 218 135 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0792 NR:ns ## KEGG: PEPE_0792 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 10 135 2 127 127 176 69.0 3e-43 MVNIRKSPAQDVYDRYFKLSKQLKYDTYDYLPASNEKVKYPFVVLSGIEDNKGNTKTELT GSIVLTIDCWGTPKQRSTIHEMVERFFYASIGHINTENYSYYGQVQQQSTRILIDTSVPN STLLHGIVTVELQIL >gi|269838486|gb|ACXB01000025.1| GENE 21 17171 - 17512 310 113 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0791 NR:ns ## KEGG: PEPE_0791 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 113 1 113 113 201 92.0 6e-51 MSNYNFSIKGQDALIRKLKQNMQKTAVKEIVKKHTANMQTEAQKLAPVDTGNLKRSIRLE LLKGGMAGAVISPADYSGYQEFGTRFMAAQPYMGPAWRKERPIFISELRALVK >gi|269838486|gb|ACXB01000025.1| GENE 22 17505 - 17810 339 101 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0790 NR:ns ## KEGG: PEPE_0790 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 101 1 102 102 149 72.0 3e-35 MRFTDKVKFYKSNDHYDSDNPSGDPIKVGEAIANVTHLGVDRSQQLFGDIDVDRLVVRLV EPFDDGWDVLTVNGGDTFYKLQTGVYPLKIMGFIVGETQNE >gi|269838486|gb|ACXB01000025.1| GENE 23 17815 - 18189 357 124 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0789 NR:ns ## KEGG: PEPE_0789 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 124 1 123 123 139 76.0 3e-32 MDETEDLKNLKKLLMLKKDDVSKDELLQLILDNTSASLKIKLHRKASEAVPDELNYILLE VAVRRFNRLKNEGMANYSQEGESITFNSDDFDDFKDDIVDWLADQEDKPTSLGKVSFISG YQGK >gi|269838486|gb|ACXB01000025.1| GENE 24 18201 - 18434 202 77 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0788 NR:ns ## KEGG: PEPE_0788 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 77 1 77 77 64 80.0 1e-09 MGDAKDITITSDPVDASDADAVVKAMTAVSSDETVATVSKKSDGMFTVTGVKAGTATITF TSGKFTTTLAVTITDAA >gi|269838486|gb|ACXB01000025.1| GENE 25 18485 - 19303 1103 272 aa, chain - ## HITS:1 COG:no KEGG:LACR_1137 NR:ns ## KEGG: LACR_1137 # Name: not_defined # Def: hypothetical protein # Organism: L.lactis_SK11 # Pathway: not_defined # 7 260 6 259 272 334 72.0 2e-90 MADTAPTKIADLTNPEVLAPIVSYELQKALRFSPLANVDTTLQGQPGTTLKFPKFTYIGD AQDIGEGEAIPLDKLGTETQEATIKKAAKGTSITDEAVLSGYGDPLGESTRQLGLSLANK VDDDVLEAAKTATQTITFDPTVDGIQAALDIFDDEDDKVVVAIMSPKDAAKVRKDAMAQK LGSEVGANQLINGTYLDVLGVQIVRSKKLKEGEAVFIKVDPTKPALKLIMKRGVQVETDR DITRKTTIMTADEHYTAYVYYDKNLIYSAPKA >gi|269838486|gb|ACXB01000025.1| GENE 26 19303 - 20019 711 238 aa, chain - ## HITS:1 COG:no KEGG:LACR_1136 NR:ns ## KEGG: LACR_1136 # Name: not_defined # Def: hypothetical protein # Organism: L.lactis_SK11 # Pathway: not_defined # 1 236 1 219 220 86 32.0 1e-15 MKLEEKLPMNLQFFAEQSDGSGDATNDNLYPNADTDASSEDAQGQQEENEEENGKNENID GDKTVDKLKKRLDSKTAENHDLKQKYEEQSQLLDDLKSGRKSIKELASDDKKSKEETEKD NEIAKLKAEIARTKAINETNAVFKDQGLVVSDDVLNMVVGNGTDNDAIYENVKALTGLIN DIKEDTRKEFMKGSTPRISGKKSVKVSTKDFDQMTLAEKVQLLANDPDKFNKLTGGIK >gi|269838486|gb|ACXB01000025.1| GENE 27 20124 - 21107 543 327 aa, chain - ## HITS:1 COG:SPy0975 KEGG:ns NR:ns ## COG: SPy0975 COG5585 # Protein_GI_number: 15674985 # Func_class: T Signal transduction mechanisms # Function: NAD+--asparagine ADP-ribosyltransferase # Organism: Streptococcus pyogenes M1 GAS # 6 316 1 308 541 125 29.0 9e-29 MNQKQLNKKNDRYWNKREAEERKWIEANIKTDKDFDRLLQEHYDTLLDGINKDISEQYTR YAKREGYTIAEARKKVAQEDVQAFSNQAKKLVAKARGIFKKKGKVEYADFSDEVNTRLRL YNATMRINRLEMLKAQIGLEMIDNNMDIYTSMTDRLNNEYVDELKRQAGILSDSAGAVKA AETSSVVMVSTGNANFSERLWANSDVFKAKLDQLITKQMVQGLNPRVIARDLKPYLKDEI NNARYVTERLARTESARVQTQAQLRSFKKYHIKICKWHAEPSACKICLEIASYNEGIYSV DDVPDLPVHPNCRCSISAWHDKTNSDD >gi|269838486|gb|ACXB01000025.1| GENE 28 21076 - 22371 1092 431 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0783 NR:ns ## KEGG: PEPE_0783 # Name: not_defined # Def: phage portal protein, SPP1 GP6-like # Organism: P.pentosaceus # Pathway: not_defined # 4 422 43 462 467 504 64.0 1e-141 MMIAEHYKSLRKDYIGDHDILHKDTHRGNRPDNRLVANLAHYIVETFNGFFIGIPPKITL DDKQDNEKLKQWNDKNSFQDKLSEISRQVDIYGRSIAFLYQDEDSETRVQYASPLSAFII YDDTVDMNPIAFINYYYINNRLHGQVITNDIKYDLSDTFKMDDGEVNQFGTVPAVEFFQN EDRQGVLDNVQTLIDALDNTLSQKANQVEYFDNAYLAMLGVQLEEDEEGNPKVNLEGQQI IYSPDADATNAKLEFLSKPDGDNMQENLIDRITNLAYQISMVSNLNDEAFAGNSSGVAMQ YKLLPMRNLAMNKERKFTQSLRQLYKLLFGIGTVLDDNKKDEWQNLSFKFSQNIPANLAD EAATAKSLEGVTSKETQLSALSIVDDPKDEIDRMKKEQSDAIKNSLGVTGNLTDQQKAGM NNESETAEQEE >gi|269838486|gb|ACXB01000025.1| GENE 29 22492 - 23697 968 401 aa, chain - ## HITS:1 COG:lin0105 KEGG:ns NR:ns ## COG: lin0105 COG1783 # Protein_GI_number: 16799183 # Func_class: R General function prediction only # Function: Phage terminase large subunit # Organism: Listeria innocua # 8 388 61 442 443 340 46.0 3e-93 MKQQIQRNHKANIVCVRENAVNLRDSVFNQIKWAIDMLGMTSEFRSSVSPMKIEHIRTGS TFRFYGADNPEKLKSNTISNVIALWYEEISNFKSGEVFDQSNSTFVRQKSPFVDAVKIFY SFNPPKSKYNWVNQWAEAMAGDQDYFIDTSDYTMDRLGIIQPEQLRMIEKYKRNDYNYYS WLYLGKSIGIGNNVYNMKLFHKLQEIPTDDEIKSLAVGLDAGHINSATTAVVIGLTSKGK VIVLDTYYYSPHNKANKKAPSDLVPEIKSFLDSVQKRYGNKRYIKLTIDSAEGAMRNEFV KEFNLRWHGVIKKKEAEMIDFVSNLLAQGRVYYLDNEDNKIFIDQHERYSWDDKTFELDE PKVIKEDDHTCDAFKYIIMDLASKLGLKQGNKAAVLRNDYI >gi|269838486|gb|ACXB01000025.1| GENE 30 23832 - 24323 473 163 aa, chain - ## HITS:1 COG:lin0104 KEGG:ns NR:ns ## COG: lin0104 COG3728 # Protein_GI_number: 16799182 # Func_class: L Replication, recombination and repair # Function: Phage terminase, small subunit # Organism: Listeria innocua # 1 133 1 139 180 98 47.0 4e-21 MKLTAKQKKFADNYIKTGNATQSAIDAGYSKKTAPTIASENLIKPNIKAYIDKKMREIES DRIMDAQEALEFLTNVVRGKELETKVVATQYDVSTVKVPADVKTKISAAKEILKRYPDND KLLEQQIRKLTAEADISEYKAKVMTDATNLEDKTVIVSDLPDE >gi|269838486|gb|ACXB01000025.1| GENE 31 24968 - 25411 287 147 aa, chain - ## HITS:1 COG:no KEGG:LGG_01120 NR:ns ## KEGG: LGG_01120 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 137 1 130 143 85 35.0 4e-16 MTLLPELDKEQTKYNARKILSKYRKYKAYINAPVNPKVTASFGDGAPSATAPAPEYVEQR MINAEKGKVFCKWVDWAINSCRKYHYRELLKIVYCEGYEEDHGYYMDVLMQRLPDRYYNM SSTTYFNWHEAALLDVAERLECQAFVK >gi|269838486|gb|ACXB01000025.1| GENE 32 25611 - 25799 277 62 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MENIYIVKLGNLYLKESVSASQMVYTFANSINGATFYNEDYAKELAKQTGGKVYKINLEE VE >gi|269838486|gb|ACXB01000025.1| GENE 33 25986 - 26234 215 82 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0773 NR:ns ## KEGG: PEPE_0773 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 82 1 97 98 83 54.0 2e-15 MLKEYRKTATIKAEQFDGSDEMIDKYGIVKENFVIDGWDPTFSIPTLEGDLAINIGDWIA TGVEGEHWAIADDIFRKTYEEV >gi|269838486|gb|ACXB01000025.1| GENE 34 26416 - 26628 169 70 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIKDVLFGILALILIPIIFIMPFYLCYKDWVPVEKNLAEWNECPYDMTYWEVWRKNIANI YWKESLGENL >gi|269838486|gb|ACXB01000025.1| GENE 35 26621 - 26866 304 81 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTKEEYVKTFEKPRRVVKLKGIHGLRKYVRLDDEGKVILGLTGSDGITGGALTEEEAKEK WPEYDAYNNAGLLEFVEVEDD >gi|269838486|gb|ACXB01000025.1| GENE 36 26867 - 27160 247 97 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0768 NR:ns ## KEGG: PEPE_0768 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 97 1 97 97 111 58.0 1e-23 MIIKINEDYQIKIESHNNHTLMKFIRDDSGAIKLDKDNLPVMKQLGFYPSVRYALNAAIH LMIRDNNDVMKLTQYLDELDRLEDQFKPVLERFKEGD >gi|269838486|gb|ACXB01000025.1| GENE 37 27157 - 27324 193 55 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFMLWYFSCVFWLLPAVLIGHVLHSGLIGVAIFIAAIILQTWISGITYLIRGIKK >gi|269838486|gb|ACXB01000025.1| GENE 38 27327 - 27698 401 123 aa, chain - ## HITS:1 COG:no KEGG:PEPE_1013 NR:ns ## KEGG: PEPE_1013 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 123 1 123 123 165 70.0 4e-40 MYVIKNTATNTYYRRLGNQVHQYVGIEDATVFRKWKQAKQKADILHAAISPIGEQVNFEV KQHNFYVLKNKHDKGYMNQISWTAPKEEAKLFAEKEAALKEAEEIAIGMAKVGIDVEFEP EEV >gi|269838486|gb|ACXB01000025.1| GENE 39 27685 - 27834 172 49 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTVEEIVREIYGNNYTIDDLKRIEKAVTEEQECWRKKQFKKEIEKNVCN >gi|269838486|gb|ACXB01000025.1| GENE 40 27831 - 28277 103 148 aa, chain - ## HITS:1 COG:lin1248 KEGG:ns NR:ns ## COG: lin1248 COG4570 # Protein_GI_number: 16800317 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvase # Organism: Listeria innocua # 16 148 1 136 145 83 36.0 1e-16 MLAIGTKYAKRRCPQVIKLVIDGEPVAASRPRVTRKGWAYIAPKYKAYKDRTHLIVKNQY KGEPLMGALKVKTTFYRSVQKSVSKAERNRRLSNEHRPIFKPDIDNLFKAVTDACTGVVW HDDNQIVSVEMDKMYAEEPRVEMEVHEL >gi|269838486|gb|ACXB01000025.1| GENE 41 28225 - 28845 645 206 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|270291648|ref|ZP_06197868.1| ## NR: gi|270291648|ref|ZP_06197868.1| predicted protein [Pediococcus acidilactici 7_4] # 1 206 1 206 206 383 100.0 1e-105 MWQLIGVNSKEVYGESEHKSDLHKWMLKTYTKYDGDRKDSVYMDMPEPMRYIRVGEAVNQ ADIEQELLDRGDYEGFRRARGLSISKVKKRKYIGEISMTKHKMKVAWQKLIPEMLDRNLS YADIAWKLGVETQTIYSDLRELGIEINEGKSKMTPKKWTKKEDAFLIAERSKGATFDEIA EKLGMAGYNVASHWYKVCKKKVPSSD >gi|269838486|gb|ACXB01000025.1| GENE 42 28845 - 29072 316 75 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0764 NR:ns ## KEGG: PEPE_0764 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 74 1 73 76 89 79.0 3e-17 MKDNSFEFSANMKKVTLDRNGAQVLLTVEDTDFLEVANQLSNTAGDDVLVKITPKQMELN TDEPQEAEGQKELLD >gi|269838486|gb|ACXB01000025.1| GENE 43 29062 - 29385 248 107 aa, chain - ## HITS:1 COG:lin1248 KEGG:ns NR:ns ## COG: lin1248 COG4570 # Protein_GI_number: 16800317 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvase # Organism: Listeria innocua # 11 94 50 133 145 62 38.0 3e-10 MAAAVKDQYHGDPVDYAVHVQLSIYRPIQKSLSKKEREMRLLGFHRPVVKGDIDNYFKAV TDACTGLLWVDDAQIVSTKTNKYYSEDPHVEMLVMPADLDLEENNER >gi|269838486|gb|ACXB01000025.1| GENE 44 29499 - 29915 327 138 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0761 NR:ns ## KEGG: PEPE_0761 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 138 1 138 138 179 75.0 3e-44 MAYMDYREYQAIMKENGYKESKAVRLFLKRAAAFNKRKKILMKREEADCGNRILNQYINQ TEEQRWKAVWDAIDCAEIEKRQGFMFFEDGGGDKFMDVMITQYKGDLSRMTAVEKATYKY YELLDEMAKRAREGALAS >gi|269838486|gb|ACXB01000025.1| GENE 45 29915 - 31147 1162 410 aa, chain - ## HITS:1 COG:all7274 KEGG:ns NR:ns ## COG: all7274 COG0305 # Protein_GI_number: 17233290 # Func_class: L Replication, recombination and repair # Function: Replicative DNA helicase # Organism: Nostoc sp. PCC 7120 # 4 389 20 429 454 151 31.0 2e-36 MNTDIERGVIGSLLNHPEKVGAVALNEEWFGYEDYRLIYRAISETTGHDILDIYGKYNQL TKKAMDFRTFKQIVDEAPAVSQLNNDINLMRKLAYKRELSSAIKDYQANPFSENEEKIRE ILAKDQTLEATDDGKLDDAFEELREALNHPKPRGVKTFKQLDTILGGGLYGSMLLTIGAR PSTGKTAFSVNLAYEAMTNDQDVEVDFFTLEMNKQEMLNRFISRMTGISSSTLRTNANKI SPVLKKLINQSIEQLAQSQLRVYDGLETLGEIVQTIRKNASRAKQGKYMAIIDYIGLVKV PNVKERYIEVGEVTRELKRLTNEFNIPIVALSQLSRGIENRNDKTPVLSDLRESGSIEQD SNVVAFLHRPESVGDDHVVQLSIRKNREGELADINFTFIGEEMTFKEVAI >gi|269838486|gb|ACXB01000025.1| GENE 46 31137 - 31967 376 276 aa, chain - ## HITS:1 COG:SA1791 KEGG:ns NR:ns ## COG: SA1791 COG3935 # Protein_GI_number: 15927557 # Func_class: L Replication, recombination and repair # Function: Putative primosome component and related proteins # Organism: Staphylococcus aureus N315 # 5 133 3 135 297 59 32.0 8e-09 MGDQGWISLYRKIQNSFVWTNSDQLKLWLLILMKANHSENKFLFNGEEISVTSGQMVTGA HILASEFNEGVPRDKAVTWRTLWRWIKKFENAEMLTIKSTTKYSVITVNNWSEYQEHDKP VTKQRQATDNPMTTNNNDNNEDKEPHVDYAALISYLNEKSGRAFHNTEANRKLIKARLND GFTKKDFKLVIDYKSTEWKDNKDMQKYLRPNTLFAPSHFDDYLNEAKEYLNHANRTKTTS DGQCKGKTPEEIVNKEAEHLKEIERRAQEAKAINEH >gi|269838486|gb|ACXB01000025.1| GENE 47 31988 - 32413 438 141 aa, chain - ## HITS:1 COG:L0300 KEGG:ns NR:ns ## COG: L0300 COG0629 # Protein_GI_number: 15673001 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-binding protein # Organism: Lactococcus lactis # 1 141 1 150 150 160 58.0 1e-39 MINRTVLIGRLTKDVELRHTAKGDAVASFTVAVNRQFTNSQGEREADFINCVMWRKAAEN FAKYTQKGSLVGIEGRIQTRSYENQQGQRVYVTEIVADNFSLLDSKPKGNQQNNARQTST PGDPFANGGQSIDISDENLPF >gi|269838486|gb|ACXB01000025.1| GENE 48 32406 - 32612 241 68 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNENYELGYENGQIAMLDALNQKLTNISEPLYRRLLKDGKLDSAGNAQLYVLNSIRDWQI ERIEELHD >gi|269838486|gb|ACXB01000025.1| GENE 49 32615 - 33250 591 211 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|270291655|ref|ZP_06197875.1| ## NR: gi|270291655|ref|ZP_06197875.1| predicted protein [Pediococcus acidilactici 7_4] # 1 211 1 211 211 366 100.0 1e-100 MIQQNIDISPTPKLNQALYETQKILEQPQKNKQAHYGKYADLRAIDRAIRKAINTADSGI SFSQGVIDDANASGKVSHKIYTVIRHISGEEKIIYGDSFPDDSNMQKQGANETYAKRTSL CLAFGIVADDDDDGQGASLLEQYQRKEEENKVKVIAYLKDNIKKVDKDVSERVFAVLGKK DKTLDHLSYRQALILSGALMYELARENKMEE >gi|269838486|gb|ACXB01000025.1| GENE 50 33260 - 33472 379 70 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNGFERAQKAYEEELPSYFDSVERTDDELEDDILEKLDDMNEDDMRELLYSFALDETISL DTRRKTFGLD >gi|269838486|gb|ACXB01000025.1| GENE 51 33621 - 33902 351 93 aa, chain + ## HITS:1 COG:no KEGG:Cbei_4995 NR:ns ## KEGG: Cbei_4995 # Name: not_defined # Def: hypothetical protein # Organism: C.beijerinckii # Pathway: not_defined # 5 92 4 91 92 72 39.0 7e-12 MSKPYIVSYDLDNPGQKYNELKKIIDAHSIDWCRYLDSTFLIRTNDSADDILQALKAVID SNDRVFIANISNTDYSGWLIDKQRDYIRNNILY >gi|269838486|gb|ACXB01000025.1| GENE 52 33899 - 34120 278 73 aa, chain - ## HITS:1 COG:no KEGG:PEPE_1026 NR:ns ## KEGG: PEPE_1026 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 60 1 59 85 63 61.0 1e-09 MKLAKIREDVYINPYNITSIEFDDEYNTTLITMVNEDVFSLKMPIKKALDTICGSEEHSV EYEDAENYRQNKD >gi|269838486|gb|ACXB01000025.1| GENE 53 34217 - 34423 335 68 aa, chain - ## HITS:1 COG:no KEGG:PEPE_1028 NR:ns ## KEGG: PEPE_1028 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 68 1 69 69 72 57.0 4e-12 MAVKERLSDDKFPLLMDRKTVAEYLGFSVATVDKAVEYGGLDEAVISPSYLNRTYYIKPK VNKWVEGL >gi|269838486|gb|ACXB01000025.1| GENE 54 34492 - 35226 735 244 aa, chain - ## HITS:1 COG:PM1774 KEGG:ns NR:ns ## COG: PM1774 COG3646 # Protein_GI_number: 15603639 # Func_class: S Function unknown # Function: Uncharacterized phage-encoded protein # Organism: Pasteurella multocida # 5 104 29 125 239 70 41.0 4e-12 MKNLVIMKDQQAVTTSLQVAEVFGKNHKHVLDAIQNKIDSAENSAQYDSMFAQGEYKDKS GKRNKMYYMNRDGFTFIAFGFTGKKADEFKLKYIDAFNKMEETIKEHRTELPTDPMEVLR LVFNATENTNKKVDRIDSDVDYLKNNQRLDVGEYGYISRRVSEKVNEYIKIHGLALTAAQ RSKLFKDINRGLNEVTGIKTRSQLRQKDFDKADEFISNWQPSTATIQIIKEMSKVPAGQT TLGD >gi|269838486|gb|ACXB01000025.1| GENE 55 35240 - 35443 148 67 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0749 NR:ns ## KEGG: PEPE_0749 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 67 3 69 69 94 94.0 2e-18 EEATLENQALELQLKIEVARKRKGMTQEQLTAAIGEKWPSVVSRAIRGDQSPKSKRVREK IYKVLGL Prediction of potential genes in microbial genomes Time: Fri May 27 07:08:41 2011 Seq name: gi|269838485|gb|ACXB01000026.1| Pediococcus acidilactici 7_4 cont1.26, whole genome shotgun sequence Length of sequence - 1783 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + SSU_RRNA 152 - 1717 99.0 # EF059987 [D:1..1568] # 16S ribosomal RNA # Pediococcus acidilactici # Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Pediococcus. Prediction of potential genes in microbial genomes Time: Fri May 27 07:08:43 2011 Seq name: gi|269838484|gb|ACXB01000027.1| Pediococcus acidilactici 7_4 cont1.27, whole genome shotgun sequence Length of sequence - 3291 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + LSU_RRNA 156 - 3065 99.0 # EF116575 [D:1..2910] # 23S ribosomal RNA # Pediococcus acidilactici # Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Pediococcus. + 5S_RRNA 3175 - 3291 99.0 # CP000422 [D:121720..121836] # 5S ribosomal RNA # Pediococcus pentosaceus ATCC 25745 # Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Pediococcus. Prediction of potential genes in microbial genomes Time: Fri May 27 07:08:43 2011 Seq name: gi|269838483|gb|ACXB01000028.1| Pediococcus acidilactici 7_4 cont1.28, whole genome shotgun sequence Length of sequence - 607 bp Number of predicted genes - 2, with homology - 1 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 6 - 98 57 ## 2 1 Op 2 . - CDS 50 - 346 249 ## COG1396 Predicted transcriptional regulators - Prom 530 - 589 8.5 Predicted protein(s) >gi|269838483|gb|ACXB01000028.1| GENE 1 6 - 98 57 30 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRSYQGQPITDEEREVMRGIIKAYLDNKKK >gi|269838483|gb|ACXB01000028.1| GENE 2 50 - 346 249 98 aa, chain - ## HITS:1 COG:lin2607 KEGG:ns NR:ns ## COG: lin2607 COG1396 # Protein_GI_number: 16801669 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 1 64 1 64 107 70 50.0 7e-13 MTVLERIKKISKKRGYSLTQVNEKAHLGTNTIYSWKTKEPSFNNLQAVAKVLDVSVDYLL GKTDIETTKKKHVIWKSKKRLTPCVVTKVNQLLMKSAK