Prediction of potential genes in microbial genomes Time: Mon Jul 18 11:54:57 2011 Seq name: gi|281298397|gb|ADDO01000001.1| Peptoniphilus lacrimalis 315-B contig00033, whole genome shotgun sequence Length of sequence - 10114 bp Number of predicted genes - 10, with homology - 10 Number of transcription units - 4, operones - 2 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 27/0.000 - CDS 1 - 523 511 ## COG0732 Restriction endonuclease S subunits 2 1 Op 2 . - CDS 468 - 2000 1366 ## COG0286 Type I restriction-modification system methyltransferase subunit 3 1 Op 3 . - CDS 2004 - 2213 258 ## COG3655 Predicted transcriptional regulator - Prom 2248 - 2307 9.4 - Term 2329 - 2368 -0.6 4 2 Tu 1 . - CDS 2376 - 2669 269 ## gi|282881755|ref|ZP_06290416.1| conserved hypothetical protein - Prom 2825 - 2884 10.6 - Term 2885 - 2920 3.4 5 3 Op 1 . - CDS 2948 - 3532 847 ## HMPREF0868_0145 hypothetical protein 6 3 Op 2 34/0.000 - CDS 3543 - 4247 696 ## COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters 7 3 Op 3 . - CDS 4237 - 5754 243 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 8 3 Op 4 35/0.000 - CDS 5757 - 7466 220 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 9 3 Op 5 . - CDS 7459 - 9246 1597 ## COG1132 ABC-type multidrug transport system, ATPase and permease components - Prom 9274 - 9333 3.1 - Term 9299 - 9333 2.1 10 4 Tu 1 . - CDS 9350 - 9922 543 ## COG1309 Transcriptional regulator - Prom 9955 - 10014 7.7 Predicted protein(s) >gi|281298397|gb|ADDO01000001.1| GENE 1 1 - 523 511 174 aa, chain - ## HITS:1 COG:Cj1551c KEGG:ns NR:ns ## COG: Cj1551c COG0732 # Protein_GI_number: 15792859 # Func_class: V Defense mechanisms # Function: Restriction endonuclease S subunits # Organism: Campylobacter jejuni # 8 171 1 159 380 172 52.0 4e-43 MNWRRRFVRNWGRLVMRYRLDEIVDVTMGQSPKSEYYNTEKNGYPFLQGNRTFGFKYPTF DTYTTVMTKSAKAGDVIMSVRAPVGALNITPVDMCLGRGVCSLRMKNGNQSFLFYMMKYY ISHLLKKESGTVFGSVNRNDIIGLEVDIPEDVEEQNKIARYLEMIDDKIELNNA >gi|281298397|gb|ADDO01000001.1| GENE 2 468 - 2000 1366 510 aa, chain - ## HITS:1 COG:XF2742 KEGG:ns NR:ns ## COG: XF2742 COG0286 # Protein_GI_number: 15839331 # Func_class: V Defense mechanisms # Function: Type I restriction-modification system methyltransferase subunit # Organism: Xylella fastidiosa 9a5c # 5 482 12 491 519 522 50.0 1e-148 MAGKNNANIGFEKQIWDAACVLWGHIPAAEYRKVIVGLIFLRYISSAFEKRYEELLKDGD GFENDRDAYAEENIFFVPEEARWSKISSAAHTPEIGTVIDDAMRAIEKENTSLKNVLPKN YASPDLDKRVLGEVVDLFTNEVKMDGTEASKDLLGRTYEYCIAQFAAYEGTKGGEFYTPS SIVKTIVAILKPFNNCRVYDPCCGSGGMFVQSEKFVQAHSDNRGNISVYGQESNADTWKM AKMNMAIRGIDANFGSYHADTFFNDIHKTLKSDFIMANPPFNLSNWGADKLKDDVRWKYG TPPSGNANYAWIQHMIHHLAPNGKIGLVLANGALSSQSSGEGEIRRKIIEDDLIEGIVAL PTQLFYSVTIPVTLWFITKNKKQKGKTLFIDARKMGYMVDRKHRDFTEGIQADGSLGDID LLAKTFEDFQNGELKEKKGFSAIASIEDIAKQDYILTPGRYVGIEEQEDDGEPFEEKMTR LTSELSGMFEKSHELEEEIRKKLGAIGYEI >gi|281298397|gb|ADDO01000001.1| GENE 3 2004 - 2213 258 69 aa, chain - ## HITS:1 COG:SPy0544 KEGG:ns NR:ns ## COG: SPy0544 COG3655 # Protein_GI_number: 15674643 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Streptococcus pyogenes M1 GAS # 1 67 1 67 69 60 46.0 8e-10 MKANYKKLWHILLDKDMKKKELAQIAGVSTYTINKLNKNDNVTVEVLGKICKALDCTLDD IMEFEEDGE >gi|281298397|gb|ADDO01000001.1| GENE 4 2376 - 2669 269 97 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282881755|ref|ZP_06290416.1| ## NR: gi|282881755|ref|ZP_06290416.1| conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] # 1 77 1 77 97 92 100.0 1e-17 MHVVVGELKKKSGRNLFRKLNEHSKDLQAKQEEVAKKHNALSVKYEDLENLKVNMNEYLG RNKVEKKESVIGAIEKHKAEDKEKPKEKKEIIKEFER >gi|281298397|gb|ADDO01000001.1| GENE 5 2948 - 3532 847 194 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0868_0145 NR:ns ## KEGG: HMPREF0868_0145 # Name: not_defined # Def: hypothetical protein # Organism: Clostridiales_BVAB3 # Pathway: not_defined # 1 194 1 194 194 303 97.0 2e-81 MKNKLNGRDFITIGIFNAIGIVIYMAVAFAMATTVIGGFIASGVSFMVAATVYILMAVKV KKKGVFTISGTLLGLIALSGGHLPHAVFAVIGGIICDLIIGNYESKGRMIIGYGTFALAD FLGTVIPVILFGTASFVERASKWKMSEAQINEALSYFKVSWAVGFGLITFILACIGALVA TRILKKHFEKAGVI >gi|281298397|gb|ADDO01000001.1| GENE 6 3543 - 4247 696 234 aa, chain - ## HITS:1 COG:SPy1788 KEGG:ns NR:ns ## COG: SPy1788 COG0619 # Protein_GI_number: 15675627 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, permease component CbiQ and related transporters # Organism: Streptococcus pyogenes M1 GAS # 7 195 3 191 226 79 30.0 7e-15 MADRKTIDPRIKLTLLPIVGFTSFFISDTILLFVLIVFAFFLYLYSGMWKRALRFILFFV LLYCIELGLGKFCEASIVFAIYMFIYFASRMTLIAMFGGYITKTTSVSEMLEALNRMKVP RSIGIPFSVLLRFVPTIKIELKALKENMKIRVIVTSKFFPLLHPIKYIEYTLVPLLMRMI KISDELSASALIRGLDSDENRVTLTELQFRCADLTIGLLGAFMIALMIVIQRIY >gi|281298397|gb|ADDO01000001.1| GENE 7 4237 - 5754 243 505 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 287 479 16 217 245 98 30 2e-20 MILLKDVSYEWEDGRTALKNINLEIKKGEFVLISGKSGSGKSTLGSVINGLIPHYYKGKM QGEVFASGKDISKLLLHEIGHIVGTVFQDPRSQFFTTTTDEEIAFGLQTICKSRKEIKQK VEEVYAELDIEELKGKSVFELSSGQKQKIAIASIYAMNPKVLILDEPSANLDMKATFDLF LILEKLKKNGTTVVLIEHRLYYVKSLFDRFLLVKDGEIVHDLSREEVIHLEGEFWDENGL RTLELEEYKINEKKDSYQLNDESINGKGLRFCYPNVAKDGKKQNKYILNHLDFNMECGKA IGLIGLNGTGKTTFARVISGLEKIEEGKIWAEKDKELNRKDLMDMSYFVFQDSDYQLFSE SVLDEMLLGISSKDKKENTQKAKSILSVLGLDKYIDKHPFALSRGEKQRLTIACGMMKQA KIFIYDEPTSGCDKDSMLSVAKLIEEQLKIGTTVLVISHDFEFLANTVSKLWVMGDGKIE TVLNMSESNKFLILDKMRGGSKLGR >gi|281298397|gb|ADDO01000001.1| GENE 8 5757 - 7466 220 569 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 306 552 252 507 563 89 26 1e-17 MFRETLKLLTKTGKRDLIISSVFFALYGLSSIAMIVIVFSILFQIFDGTSLASLYKYFIA IGLLVVFKGICNMVADMKKHSAGFDIVQQIRERMIIKLKKFSLGFYTNERLGEINTILHK DVDNMSLVVGHMWSRMFGDFLIGAVVFVGLASIDLKLAILMAVSVPIALIFLYLTIKQSE KIENQNNSALLDMVSLFVEYVRGIPVLKSFSNNKSLDNELMNKTKKFGETSKSASRFKAK QLSIFGFLLDIGYLVLLIAGTIFVVKENLDVLNFIIFAVISKEFYKPFASMEQHYMYYVS AVDSYERLSKILYADLIPDKVNGIVPKDNDIAFENIDFSYEKDEFKIENLNFSIAEKRVT ALVGESGSGKTTITNLLLRFYDVHKGKIKLGGTDIIDIPYDELLDRISIVMQNVQLFDNT IEENIKVGKKGATEEEIIEAAKKARIHDFIMSLPKGYETDIGENGGVLSGGQRQRISIAR AFLKDAPILILDEMTSNVDPVNESLIQDAITELAKNRTVLVVAHHLKTIQKADQILVFQK GNLLEKGKHEELLDKNGYYTKLWKAQYKV >gi|281298397|gb|ADDO01000001.1| GENE 9 7459 - 9246 1597 595 aa, chain - ## HITS:1 COG:SA2216 KEGG:ns NR:ns ## COG: SA2216 COG1132 # Protein_GI_number: 15928006 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Staphylococcus aureus N315 # 16 571 21 577 577 318 36.0 3e-86 MPEKEMRKKVIGKNGLSNSLLALKIVFDLIPQILLVYLISSLITNNINEDNLKYVFIGIF ISFALKGVFYYFATKVAHEKAYEKLTELRLDIIDHLKKLSLGFFKEHNTGELTNIVQHDV EQVEVYLAHGLPEIMSVTLLPTIIFVAMIFVDWRLALGMIAGVPLMYLVKVLSQKTMDKN FAIYFNHEKKMREELMEYVKNISVIKAFAKEEEISERTLKTAREYVYWVKKSMGMVTIPM GLIDIFMEIGVVIVMILGSIFLYHGNITTPNFILSIILSSAFTASISKTATLQHFSIVFK EALNSIGKVLTVPLPTKNTKQGLEFGNIEFKDVNFAYGKDGFELKNINLTFKKNSLNAFV GASGCGKSTVSNLLMGFWDADEGQILINGKDIKEYSQENISMLIGSVQQEVILFDLSIFE NISIGKLNVTKEEVIEAAKKARCHDFISALPNGYETRVGEMGVKLSGGEKQRISIARMIL KNAPILILDEAMAAVDSENERLIGEAIDDLSKDKTIITIAHHLNTIRDSDQIIVMDKGVV LDAGSHEELMKRCDFYKDMVEAQNKVDRWNLKDESLSRARNEVDCECTEVVTENV >gi|281298397|gb|ADDO01000001.1| GENE 10 9350 - 9922 543 190 aa, chain - ## HITS:1 COG:FN0473 KEGG:ns NR:ns ## COG: FN0473 COG1309 # Protein_GI_number: 19703808 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Fusobacterium nucleatum # 1 190 1 189 189 161 50.0 7e-40 MAQVLKEEVRNRILDAAEKVFYKNDYRGAKLTEIAKEADIPVALIYTYFKNKEVLFDAVV SSVYINFESAFNEEESLEKGSASERFDEVGENYIHELLKERKKLIILMDKSSGTKHIEAK QKLISQMEAHIEVSLKRQSKEEYDPMLAHILASNFTEGLLEIARHYQSEKWAKDMLKLIA RCYYKGVESL Prediction of potential genes in microbial genomes Time: Mon Jul 18 11:55:08 2011 Seq name: gi|281298395|gb|ADDO01000002.1| Peptoniphilus lacrimalis 315-B contig00032, whole genome shotgun sequence Length of sequence - 1363 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 1344 1095 ## COG3735 Uncharacterized protein conserved in bacteria Predicted protein(s) >gi|281298395|gb|ADDO01000002.1| GENE 1 1 - 1344 1095 447 aa, chain + ## HITS:1 COG:VC2220 KEGG:ns NR:ns ## COG: VC2220 COG3735 # Protein_GI_number: 15642218 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Vibrio cholerae # 182 447 33 287 298 75 24.0 2e-13 KKLLRYFIIFSVLFSFIFVNAGVNNSYLNDNLPIKSENYYTKKAKIKNNIKLSYWALYDI NDSQFYGIFPFERNKENMDFTKNLTLDDAKYLYKNTKDKLNSLNINTNDKEFNFKNLNRN EVISSILFLVNKDESFSQKFFYGLQDKDYLNKKISLQESICLYTRACKEIIGEENKESQG YFYKVEKGNNKIYLLGSIHLGIKEMYPIRSEIIKALNESKEIYFEIDPTDPELSKIYKTN MYYDSKGNLENDLGQTYNRLLPFLLQRGIPKERINKIRPWAVYNMLSLDEKNIYGSSYGI ENYFSNLALINNIPIKELESAKFQAKLLKNFDTDMYASMIEDLISEIEINGYKNINQSLY LTQKDWIDGNTKNLKVLTEDDGYSQAQISFDKALLDKRDIDMAKKIDKLLKEENNKTIFV VVGAAHLVPQTSARGILEDMGYKVIKL Prediction of potential genes in microbial genomes Time: Mon Jul 18 11:55:08 2011 Seq name: gi|281298392|gb|ADDO01000003.1| Peptoniphilus lacrimalis 315-B contig00063, whole genome shotgun sequence Length of sequence - 1121 bp Number of predicted genes - 2, with homology - 1 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 134 - 715 546 ## COG1943 Transposase and inactivated derivatives - Prom 806 - 865 9.5 + Prom 767 - 826 12.1 2 2 Tu 1 . + CDS 1004 - 1121 135 ## Predicted protein(s) >gi|281298392|gb|ADDO01000003.1| GENE 1 134 - 715 546 193 aa, chain - ## HITS:1 COG:RSc2966 KEGG:ns NR:ns ## COG: RSc2966 COG1943 # Protein_GI_number: 17547685 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Ralstonia solanacearum # 15 130 15 131 241 77 30.0 2e-14 MPTTAREYSETDIYHVFARANNREKIFLDKSDKDYYINLIKLSKDELNFRVFAFAIMDNH IHILLKAEREDLSKIMKFIQQSYTFYFNKKYKHSGRVFGSRFKSKGCNDDIYLTELVKYI HLNPKKAGLSDLYMNMFTSHRFYVSDCDSFVDVNYILNFFSADISKARIMYLDYLNLPFN CSAKDIYCDGVKH >gi|281298392|gb|ADDO01000003.1| GENE 2 1004 - 1121 135 39 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTSTNLNIRTDKEIKEKAEKIYSSLGLNMTTAINIFLRA Prediction of potential genes in microbial genomes Time: Mon Jul 18 11:55:18 2011 Seq name: gi|281298373|gb|ADDO01000004.1| Peptoniphilus lacrimalis 315-B contig00021, whole genome shotgun sequence Length of sequence - 17300 bp Number of predicted genes - 17, with homology - 17 Number of transcription units - 4, operones - 3 average op.length - 5.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 41 - 697 320 ## PROTEIN SUPPORTED gi|163764775|ref|ZP_02171829.1| ribosomal protein L16 - Prom 721 - 780 10.3 2 2 Op 1 . - CDS 851 - 1636 1039 ## COG1191 DNA-directed RNA polymerase specialized sigma subunit 3 2 Op 2 . - CDS 1641 - 1988 328 ## gi|282881771|ref|ZP_06290429.1| anti-sigma-B factor 4 2 Op 3 . - CDS 1990 - 2301 361 ## Kfla_0571 anti-sigma-factor antagonist 5 2 Op 4 24/0.000 - CDS 2310 - 4739 3115 ## COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit 6 2 Op 5 9/0.000 - CDS 4748 - 6667 2185 ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit 7 2 Op 6 9/0.000 - CDS 6676 - 7752 889 ## COG1195 Recombinational DNA repair ATPase (RecF pathway) 8 2 Op 7 6/0.000 - CDS 7749 - 7967 264 ## COG2501 Uncharacterized conserved protein 9 2 Op 8 16/0.000 - CDS 7964 - 9061 1137 ## COG0592 DNA polymerase sliding clamp subunit (PCNA homolog) - Prom 9144 - 9203 7.3 - Term 9127 - 9173 1.3 10 2 Op 9 . - CDS 9206 - 10561 1335 ## COG0593 ATPase involved in DNA replication initiation - Prom 10647 - 10706 9.3 + Prom 10747 - 10806 11.5 11 3 Op 1 . + CDS 10933 - 11067 180 ## PROTEIN SUPPORTED gi|188587524|ref|YP_001919069.1| ribosomal protein L34 12 3 Op 2 . + CDS 11074 - 11412 280 ## Hore_23600 ribonuclease P protein component (EC:3.1.26.5) + Prom 11522 - 11581 5.3 13 4 Op 1 16/0.000 + CDS 11640 - 12374 710 ## COG0706 Preprotein translocase subunit YidC 14 4 Op 2 4/0.000 + CDS 12358 - 13167 1179 ## COG1847 Predicted RNA-binding protein + Term 13171 - 13203 -0.1 15 4 Op 3 11/0.000 + CDS 13211 - 14590 1670 ## COG0486 Predicted GTPase 16 4 Op 4 24/0.000 + CDS 14596 - 16500 1890 ## COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division 17 4 Op 5 . + CDS 16490 - 17185 703 ## COG0357 Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division + Term 17195 - 17251 10.6 Predicted protein(s) >gi|281298373|gb|ADDO01000004.1| GENE 1 41 - 697 320 218 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764775|ref|ZP_02171829.1| ribosomal protein L16 [Bacillus selenitireducens MLS10] # 13 213 16 227 236 127 35 4e-29 MYYKIDIYFDFFIRILIACICGFLIGFERENRHKFAGVRTHTIVALGACIGMIISKYGFA DSAEFDAARVAAQIVSGIGFLGAGIIFVYNNNVTGLTTAAGIWTTSLIGMAFGAGMYFIG IISSFIILILQTFLYKGEFMKFHYMVYTVIIESKISDTVSYIDKYIENIMIEKESYNLTY DNEKFILSFQFIVKDCKEKEDFIKYLESVKGIDNFKIY >gi|281298373|gb|ADDO01000004.1| GENE 2 851 - 1636 1039 261 aa, chain - ## HITS:1 COG:BH0529 KEGG:ns NR:ns ## COG: BH0529 COG1191 # Protein_GI_number: 15613092 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit # Organism: Bacillus halodurans # 7 256 4 254 261 167 38.0 2e-41 MNIKEYKELDRKLTKEEKKELFLEYYKTKDQDLRTILIEEYLYIAEILSKKYIGKGIDYD DIYQVASIGLIYSVDRFDPTKGYEFSSFATPTIIGEIKKYFRDKGWTIRVPRRIQELSKK IMIAKNKLSQEYQRTPTVEDIAEFLNASPEEIIESMEASKVYTPQSLDIVYDSGDDKKMS LQDLIGEDEKYFDKIDLKDFLLKSMKNLNEIEKTILIDRYFNKKTQIVIAKKLNISQMTV SRIEKKVLEKMRKEIKKTMEV >gi|281298373|gb|ADDO01000004.1| GENE 3 1641 - 1988 328 115 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282881771|ref|ZP_06290429.1| ## NR: gi|282881771|ref|ZP_06290429.1| anti-sigma-B factor [Peptoniphilus lacrimalis 315-B] anti-sigma-B factor [Peptoniphilus lacrimalis 315-B] # 1 115 1 115 115 181 100.0 1e-44 MEDILYSIPNNAIYFSSVRLVVGGILNTLKRDIEEIEDMKISVTECLNICLALSLSPQID IEFKIEKDNLEIQISNIDSNLLDNFDELKLAITIIECLVDKVYFQDMSIHLIKNL >gi|281298373|gb|ADDO01000004.1| GENE 4 1990 - 2301 361 103 aa, chain - ## HITS:1 COG:no KEGG:Kfla_0571 NR:ns ## KEGG: Kfla_0571 # Name: not_defined # Def: anti-sigma-factor antagonist # Organism: K.flavida # Pathway: not_defined # 1 101 1 101 109 70 33.0 3e-11 MDFKIGSLVKDKKLILIPSGELDVYSTVKFKEEALKAYNDNKFDIELDCSKLEYLDSTGL GALIFLLKTVNDNDNTISISNLNKQILKLFKITKLDEMFEIRS >gi|281298373|gb|ADDO01000004.1| GENE 5 2310 - 4739 3115 809 aa, chain - ## HITS:1 COG:CAC0007 KEGG:ns NR:ns ## COG: CAC0007 COG0188 # Protein_GI_number: 15893305 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit # Organism: Clostridium acetobutylicum # 8 805 4 802 830 906 59.0 0 MTDTKEFENGIFDVDISKKMRASYLDYSMSVIVARALPDVRDGLKPVHRRILYGMSELNL VSGGSYKKSARLVGDVMGKYHPHGDSSIYEATVRLAQDFNMRYPLVDGQGNFGNIDGDGA AAMRYTEVKMTKLAEEMLRDINKDTVEFVPNFDNDQEEPSILPSRFPNLLVNGSSGIAVG MATNMPPHNMNEVIDGIVKYIDNDDISISELQEVIKGPDFPTGALIMGRDGINKAYKTGR GKITVRAVAEIVEPKKGREQILITELPYQVNKSALVMKIAELAKDKIIDGISKITDSSNK RGIRIVIDLKKDANANVVLNKLYKETQLQITYGIINLALVNGRPQILNLKELIRYYVDHQ VEVITRRTRFDLNKAEARAHIVEGLFIALDNIDRVIKIIRSSKDDKEVIEKFDREFSLTQ IQSQAILDMRLKRLTGLEREKLQNEYDKLLEDIKRFKEILENNHVLMELIKTELLEIKDK YGDLRRTVIKSSESDIDIEDIIKEEDVIITLTQMGYIKRMPEGTYKPQKRGGRGITALTQ KEDDFVKELFVTSTHDRLLFFTNKGKVYRLKAFEVPEAGRNAKGTAVVNLLNLDKGEKIT SVINVEEFDPNYYLLMVTEKGLIKKTSNKEFKNIRQNGLIGIKLRDDDKLISVHLVRGDE EIILVTKEGKSIRFSTDELRDQGRNTMGVKSMNLDEDDTIVSSDIVGDGNYLLTVSENGF GKLTELKEYRPQNRGGKGIFTYKISEKTGKVSAASVVNKSDDIMLIADSGIIIRLLIDDI SVTSRNTMGVKLMNLNDSKVVAIAKYIGD >gi|281298373|gb|ADDO01000004.1| GENE 6 4748 - 6667 2185 639 aa, chain - ## HITS:1 COG:CAC0006 KEGG:ns NR:ns ## COG: CAC0006 COG0187 # Protein_GI_number: 15893304 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Clostridium acetobutylicum # 1 631 1 629 637 742 59.0 0 MAEKKRHYDAGDIQVLKGLEPVRKRPGMYIGSTGEKGLHHLVYEVVDNSIDEALAGICDH IKIVITKNGSCYVEDNGSGIPVEIHPQTGKSTVETVLTILHAGGKFDNKAYKVSGGLHGV GVSVVNALSTHLKATIKRNGKIYSQEFQRGKAISSLKEIGKVDKNQTGTKIEFTPDPEIF DTVEFSFDILSKRFREMAFLNKGIKIDFTDERINKNEIYHYEGGIKSFVEYINSKKKYEP IHDEIIYIDEIRENTSIEVAIQYTKSYSEEVLTFANNINTEEGGSHLSGFRSAITKTVND YGRKYNFIKEKEENLSGDDIREGMTAVLSVKLPNPQFEGQTKAKLGNSETKGVVDSVVSE KLSMFLEENPKTSKAILEKAVAARRARDAARRAREISRAKNNLDMTLPGKLFDCSDVGSE KSEIFLVEGNSAGGSAKDGRDPEFQAVLPLRGKIMNVEKATEAKMLNSSEIKAMITAFGT GYAGEFDISKLRYNKIIIMTDADVDGAHIMTLLLTFFFRYMRPLIENGHVYVAQAPLYGL EKNSKILRYCHNEEELNLALKAHESEKNINIKRYKGLGEMNYDQLWETTMNPDNRLLLRV NIEDFDETDDTFQMLMGQEVEPRREFISENAQYADYIDA >gi|281298373|gb|ADDO01000004.1| GENE 7 6676 - 7752 889 358 aa, chain - ## HITS:1 COG:BH0004 KEGG:ns NR:ns ## COG: BH0004 COG1195 # Protein_GI_number: 15612567 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair ATPase (RecF pathway) # Organism: Bacillus halodurans # 1 336 1 344 371 209 36.0 9e-54 MNLSFIGLYNFRNYKSLKLNTGPNINIIYGKNASGKTNLLEAIYMTCKAYSFKNPRDNDL INFSKNEACILGTYENNCYKDNYRIEITRNNIKKYFINEQKTNSKDFRQARHIVLFSPVD LNIIKNSPSDRRRFIDESLSNIDLSYDYYLSQYRKILMERNKLLKISKNMSLLEIYDREL SKIGSKIIIMRLIAIKELNKYANKHYQNLSKNDRLKTTYLSTIPLSSNEEEIRENFYNFL KLNQYKDFQRKNTSIGPHRDDIDFKINDKSTKAFGSQGEQRSVVLSLKLSEFDLIYKKFN DKSILLLDDVFSELDEKRTLYLLDSIKDTQTFITTTEFKDYFKNLNISSYNIEDINKE >gi|281298373|gb|ADDO01000004.1| GENE 8 7749 - 7967 264 72 aa, chain - ## HITS:1 COG:FN2129 KEGG:ns NR:ns ## COG: FN2129 COG2501 # Protein_GI_number: 19705419 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Fusobacterium nucleatum # 4 69 5 70 71 60 57.0 7e-10 MMKEKVIINDEYIKLDSFLKFQGLVESGGFAKQVIKEGLCKVNGEVEYRRGKKLYPKDIV EFQNKEYVIGEK >gi|281298373|gb|ADDO01000004.1| GENE 9 7964 - 9061 1137 365 aa, chain - ## HITS:1 COG:CAC0002 KEGG:ns NR:ns ## COG: CAC0002 COG0592 # Protein_GI_number: 15893300 # Func_class: L Replication, recombination and repair # Function: DNA polymerase sliding clamp subunit (PCNA homolog) # Organism: Clostridium acetobutylicum # 1 364 1 364 366 236 36.0 6e-62 MKFKINRKDLAKHIFIVQRAISARTTMQILEGILIKSKDNKISLTATDTEISIVTETSAL VEEEGQIVVNGRLFGNIIRKLNNDDIFIKVENFNMNIKCGNSEFNISVQNAEGYPALPNI KKDKVFSLSVDELKSAIRKTSFAVSLDETRMEFTGVYMDFLQDYINFVALDGFRMAIMKI NKNTGFTSSAIVPSRSFVELEKILDDDKKDIVINLESNNIVFEFGNTVFYSTLISGKFFD YENLLRDSYKIQTSVIRSEFQSAFERASLLAREDRANLVEMTLNNEEIYIDSKSEIGNVH EVINCSQIGENLKIAFNSRYILEGIKIMETDNIILNLTDFINPCIIKEEDNEDYIYLVLP VRLAQ >gi|281298373|gb|ADDO01000004.1| GENE 10 9206 - 10561 1335 451 aa, chain - ## HITS:1 COG:BS_dnaA KEGG:ns NR:ns ## COG: BS_dnaA COG0593 # Protein_GI_number: 16077069 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA replication initiation # Organism: Bacillus subtilis # 8 450 7 446 446 437 52.0 1e-122 MDNDFSTIWELFLKDIEKKSMSSVTYNTWFSRMLPKSWDYENKKIIISVPSQFIRDYLVN NKRHFDLVKKCLFEVTGIDFDLNIISEDEAKNVVLNKNNDSFDDNFQSTRLNPKYSFESF VVGKSNEFAHAASLAVAENYEDPRKSYSNPLFIYGGVGLGKTHLMHAIGNFIINQDPTKK ILYVTSEQFTNELINSIQKNKNEEFRNKYRKVDLLLIDDIQFIADKDRTQEEFFHTFNEL HEANKQIVLTSDKPPKEIKSLEERLISRFAWGLVVDIGQPDLETRIAILRSKANVEGFDV SEDVINYIAENVKSNIRELEGALSRVVAYSKLTSGDISIENTAIVLADIFESKKKKVINV KLIKEVICKEFDITISDIDSKKRTRQIAYPRQIAMYITRQITDLSLPKIGEEFGGRDHST VIHAYDKIEKDMQEDPVFKIKVNDIIKKIKM >gi|281298373|gb|ADDO01000004.1| GENE 11 10933 - 11067 180 44 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|188587524|ref|YP_001919069.1| ribosomal protein L34 [Natranaerobius thermophilus JW/NM-WN-LF] # 1 44 1 44 44 73 72 7e-13 MKRTFQPKNKQRKREHGFRARMRTRAGRNVIKARRRKGRKRLSA >gi|281298373|gb|ADDO01000004.1| GENE 12 11074 - 11412 280 112 aa, chain + ## HITS:1 COG:no KEGG:Hore_23600 NR:ns ## KEGG: Hore_23600 # Name: not_defined # Def: ribonuclease P protein component (EC:3.1.26.5) # Organism: H.orenii # Pathway: not_defined # 9 108 15 113 121 74 45.0 1e-12 MDRDCFIRKNSEYQKVYKAKKISSCRYITLFTKKNNLNIARAGFTTTKKIGNACKRNFVR RRFKAIYRDLYPLIYKGYDYVFVAKKDAVDCDFKDLKKDFLNVLKRQRKVKN >gi|281298373|gb|ADDO01000004.1| GENE 13 11640 - 12374 710 244 aa, chain + ## HITS:1 COG:lin2986 KEGG:ns NR:ns ## COG: lin2986 COG0706 # Protein_GI_number: 16802044 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YidC # Organism: Listeria innocua # 34 238 65 256 287 125 34.0 6e-29 MTKPISVVLGIFIRYVYNLIAQIIPNEPTNISYYALSIIITTLILKILVLPLTISQMKNQ KKMAELQPEIAKIQKKYKNDPQTLAMKQRQLYKSANYNVLSGCLPMIVQLLVLVGFYRCF YKPQTYIFSQAGFYQAMNKNFFYISNLGVADKTMILPALAAITTFFTSYLATKSPAAGAG QDQAKSMMNSMMVAMPIMIFFMGRTLQAELVIYWTVSNIFAIVQQLVVNNFVKKSVEESN ELRN >gi|281298373|gb|ADDO01000004.1| GENE 14 12358 - 13167 1179 269 aa, chain + ## HITS:1 COG:BS_jag KEGG:ns NR:ns ## COG: BS_jag COG1847 # Protein_GI_number: 16081155 # Func_class: R General function prediction only # Function: Predicted RNA-binding protein # Organism: Bacillus subtilis # 1 267 1 208 208 114 30.0 3e-25 MNYVIKTGKNVDEAVNEALKELNISKEEANIEILEEATKGFLGIIGTKDATVKVTKKEES TSDILKEIFDNDIEPEKSQEQVEPEKEIENNFSSYVDSSDEKNTSDEASLDLDEENENII KVAREFMNKIMNVLGLEADLSLGLEDNVLCVNIIGDENKLGIIIGKRGVTLDSIQYILNL IVNKHSSRYIKVNLDSSGYREKRRQTLRELAIKMADKVIRNNRSIRLEPMNAYERKIIHE ALQDYEGVITHSEGKDPYRKVVIQKERKY >gi|281298373|gb|ADDO01000004.1| GENE 15 13211 - 14590 1670 459 aa, chain + ## HITS:1 COG:BS_thdF KEGG:ns NR:ns ## COG: BS_thdF COG0486 # Protein_GI_number: 16081154 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Bacillus subtilis # 5 459 2 459 459 376 43.0 1e-104 MDTYDTIAAISTAVGEAGIAIVRTSGDNSVEIVDKIFKAKSKKKLKDSENRKFIYGHIYD NDKIIDEVLAVKMLGPHSYSGENIVEIHCHGGIVAVRRILNLLLANGARLAQKGEFTKRG FLNGRIDLSQAEAVIDLIKAKTEDSFDISMKQLEGSISKEVEKIEKNLVGMQALIVANID FPEDEVEDATYDELKRRNDEITLNIRKLLNNAGRGKLLREGINTLILGKPNVGKSSLLNG MLKYERAIVTDIPGTTRDTIEDYINLDGLLLKVTDTAGIRQTDDEVEKIGVKIARDKIKD ADLVIVIFDLSRPFNKDDREILDLIQNKKALFIMNKDDLQARVSDEDIKDLLNDRDYLKL SVRNPEEIKLVENAIKDMFFSGEIIQKDQVYVNNIRHIDALKKALKTMEETRLDLENEVF LDLVEVNLEEALEEISKITGEITTEDVLDRVFSEFCIGK >gi|281298373|gb|ADDO01000004.1| GENE 16 14596 - 16500 1890 634 aa, chain + ## HITS:1 COG:CAC3733 KEGG:ns NR:ns ## COG: CAC3733 COG0445 # Protein_GI_number: 15896964 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: NAD/FAD-utilizing enzyme apparently involved in cell division # Organism: Clostridium acetobutylicum # 4 626 2 620 626 762 62.0 0 MTQVKYFDAGDYDCIVIGAGHAGSEAGLAAARMGCKTLILCINLNAVANMACNPNVGGTG KGHLVREIDALGGEMAINIDKTFIQSRMLNTSKGPAVHSLRVQADKRKYHETMKRVLENQ ENLDLKEDEAVRILKEDNKVCGVLTRNGARYKAKTVVLCSGTYLRGRVYMGEVNYSSGPT GFGPANELSKSLEEDFSMKLMRLKTGTPARVLRSSIDFSCMEEQRGDEKIVPFSFKNYDK DMNIDQELCHLTYTTEKCHQIIRDNINRSALSLGDITGKGPRYCPSIEDKVTRFKDKNSH QVFIEPEGLTTDEMYIQGVSSSLPVEVQNEFYKEIIGLKNCKILRPAYAIEYDAIDATLL KRNLEHMDYEGLFFAGQINGSSGYEEAASQGLVAGINAALKVQGKEPFIIDRSQGYIGVL IDDLVTKGTKEPYRMMTARAEYRLTLRQDNADLRLTQIGYDLGLVDEDRYKKFLYRKENI EKELERVRSIRINPTEENNNIIRKLNSTELKNSLTLAELLRRPELNYEKLADLDKDRPKL RKDIIDNVEIEIKYEGYIKKQEIQIRQYKKLENRVLSKDLDYKKIDGLRLEAREKLSDIR PESIGQAGRITGVSPADINVLLIYLESQRRRHDA >gi|281298373|gb|ADDO01000004.1| GENE 17 16490 - 17185 703 231 aa, chain + ## HITS:1 COG:CAC3732 KEGG:ns NR:ns ## COG: CAC3732 COG0357 # Protein_GI_number: 15896963 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division # Organism: Clostridium acetobutylicum # 1 231 7 238 239 198 43.0 7e-51 MTLKDYFIKYKLNNENIEDFEKFRKFLLEYNKITNITRIVDEDEFNVKHYLDSLSIFKTG LIRDNMKILDLGTGGGFPGVPLKLYKKDLDISLVDSLNKRIVFLNKAIEELDLKNIKAIH ARAEELAFDEDYREKFQLVTSRAVARLRTLLEYALPFVEVGGYFIAMKGPEYNEEIKEVS NTFNILGGKLIEVMEIDLPLDIKHYLLITKKIKPTPMKYPRQGGKPKSKPL Prediction of potential genes in microbial genomes Time: Mon Jul 18 11:55:39 2011 Seq name: gi|281298355|gb|ADDO01000005.1| Peptoniphilus lacrimalis 315-B contig00071, whole genome shotgun sequence Length of sequence - 17964 bp Number of predicted genes - 18, with homology - 17 Number of transcription units - 6, operones - 4 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 47 - 2944 2836 ## COG1026 Predicted Zn-dependent peptidases, insulinase-like + Term 2951 - 3003 11.3 + Prom 2965 - 3024 10.0 2 2 Tu 1 . + CDS 3044 - 4129 1355 ## TherJR_0975 copper amine oxidase domain protein + Term 4146 - 4192 4.4 + Prom 4700 - 4759 6.5 3 3 Op 1 . + CDS 4830 - 6665 1710 ## COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily 4 3 Op 2 2/0.000 + CDS 6739 - 7791 1290 ## COG0009 Putative translation factor (SUA5) 5 3 Op 3 1/0.000 + CDS 7801 - 8235 464 ## COG0698 Ribose 5-phosphate isomerase RpiB 6 3 Op 4 1/0.000 + CDS 8232 - 8858 850 ## COG0035 Uracil phosphoribosyltransferase 7 3 Op 5 2/0.000 + CDS 8827 - 9894 838 ## COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase 8 3 Op 6 . + CDS 9895 - 11001 1387 ## COG0381 UDP-N-acetylglucosamine 2-epimerase + Prom 11012 - 11071 6.8 9 4 Op 1 . + CDS 11093 - 11509 493 ## COG2030 Acyl dehydratase 10 4 Op 2 20/0.000 + CDS 11524 - 12711 1951 ## COG0183 Acetyl-CoA acetyltransferase 11 4 Op 3 7/0.000 + CDS 12713 - 13495 1247 ## COG1024 Enoyl-CoA hydratase/carnithine racemase 12 4 Op 4 . + CDS 13505 - 14341 1059 ## COG1250 3-hydroxyacyl-CoA dehydrogenase + Term 14373 - 14422 9.1 13 5 Op 1 . - CDS 14512 - 14814 351 ## Apre_0011 cupin 2 conserved barrel domain-containing protein 14 5 Op 2 . - CDS 14801 - 15376 177 ## PROTEIN SUPPORTED gi|225088774|ref|YP_002660041.1| ribosomal protein S16 15 5 Op 3 21/0.000 - CDS 15373 - 16113 396 ## COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component 16 5 Op 4 . - CDS 16085 - 17152 1490 ## COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components + Prom 17012 - 17071 9.2 17 6 Op 1 . + CDS 17258 - 17782 557 ## COG0194 Guanylate kinase 18 6 Op 2 . + CDS 17790 - 17918 291 ## - TRNA 17791 - 17867 78.5 # Pro CGG 0 0 Predicted protein(s) >gi|281298355|gb|ADDO01000005.1| GENE 1 47 - 2944 2836 965 aa, chain + ## HITS:1 COG:CAC3006 KEGG:ns NR:ns ## COG: CAC3006 COG1026 # Protein_GI_number: 15896258 # Func_class: R General function prediction only # Function: Predicted Zn-dependent peptidases, insulinase-like # Organism: Clostridium acetobutylicum # 4 959 13 972 976 607 38.0 1e-173 MENYKLLEKKYIDEVASECLVYEHIKTGARVLTLKNDDNNKAFAIGFRTPPKFGNGAAHI VEHCVLSGSRKYRTKEPFMDLIKSSMQTFLNAMTFPDKTIYPVSSRNEKDFQNLMDVYLD AVFYPRIYEEEKIFMQEGWHYEIDKNTGELIYNGVVYNEMKGVYSQAENIVGDEFIFNLH EGSSYGVDSGGNPKLIPTLSYEEFLDFHKRYYHPSNSYIYLYGNMDMEEKLQYIHEEYLN NFRKEEIDSEIILNEPLEKQKYVEITYSASKEELADNKDFLLYGWCLGLALNKKDFFMRN FLSELLIDAEGAPLKRALLDANLGQDVYAETSSSKTLDLGVVLKNTDGKKINEFKKIVED TLKDIVEKGVDKKLLQATLSRFEFNYREGGGTQKAIIYYIRALNSWLYDRSPLESLEFND IIEEIKTSADKGFVEEYIKEKILNNNYSVILSCIQELDKNLKEENELKEKLREFKESLSP EKIDKIKENAENLFKYQLEDDSEEDKKTIPMLELSDISHGISEYNCTEDKISDALYLRSD QATNNIVYTTISHNIDFLNDDEIKNLPILLALIASLDTKKYSYQELDNEIYIASGGISFG CSTYKEEEKEEFKPRLNIKFKVLEENFHQAIDLIIEIIKNTKFDDKKRIKEILLSSKSQI ESGLLMSGSQVVMGLVKSYYSPMGSYNNKVSGLDAYKYLSELLSDFDSEFSKLKDKLIKL YKKIFNYKDLIISSVGKDEDLDNNKKALEKYINNLNRQGFKKAKYTFIKKNKNQGIYLSS NVNFISKGYNLKDLGEKYTGDKVVLANILSSSYLHTEIRAKGGAYGDGAVFSRNGDFLTY SYRDPNVENTIKVYNEIPNYIRNLDLSQDDLKNYIIGSMNSFDPLLSLSVIDELNLSKYL TKVFDEKVIENKEEALNTNMEKLKSYADIIEKALNENYIGAIGNEEKLRENSKYFKEIIP LNKNN >gi|281298355|gb|ADDO01000005.1| GENE 2 3044 - 4129 1355 361 aa, chain + ## HITS:1 COG:no KEGG:TherJR_0975 NR:ns ## KEGG: TherJR_0975 # Name: not_defined # Def: copper amine oxidase domain protein # Organism: Thermincola_JR # Pathway: not_defined # 61 361 7 290 407 128 33.0 3e-28 MKKIIGILLALTLIIPVFGQVKSNVSTKTIQGLRCNVCELTLDETSEIHVAKGKNALIGA ENFYEIVKNNKAQVAINGNYFDAYKTLVPMATIIKDGEVWKMVGTTPSFFVFDKNKVKID NLSLKYKGYLDGKRKNEWNNDKGLMEFNVFDLWYVNVDPTDTAGIFKFTNKYNKELNLKN GRVIEVVKDTVTKIYEPKGKISLPKDGYIIYFGKDSVDKSYIDQRFKLGRKVELVLVDSK GNETFKYNGQDISYSKVTELVAAGPMLLQNGKNVVAESKNNYKEGKINSATGQRSAIGIT KNGKVILLTAVANVDKLALIMNDLGCIDAMNLDGGASSALFANGKVIKNAGRNLNTVLIF K >gi|281298355|gb|ADDO01000005.1| GENE 3 4830 - 6665 1710 611 aa, chain + ## HITS:1 COG:mll7848 KEGG:ns NR:ns ## COG: mll7848 COG1368 # Protein_GI_number: 13476512 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily # Organism: Mesorhizobium loti # 55 577 92 600 653 152 26.0 2e-36 MESFNKLFKDIFFIAFVALLSTTMVFVLATTPFFELIKNVFSFKLVILNFLPPFLLTLFL YGLSGRVKFSIVLVSVFQIIFLITNRMKIIYRKDPFKLSDINEGLEAVKMVKSSYSPDKF SIVLALLFFIFLAIILFFYKTNKLNFSTRATILIISLVIGFFSYNGFYVSSKVYDSLKVY GNPFNEIDVYNSMGFNYSFIFKIKASMIRPPQNYNKEEYANRDREDRGEEISVLKAQEKP NFVWIMGESFTDFSQNPVFSFDKGNDPNENFKKICNQAPMTGRIVVPGFGGGTGDTEFDV LTGTLTIDTAPNGSYAFNIVKNNTKSLASVLKNIGYNTMAFHPGYEWFYHRNVVYPRLGF DKSSFLENIKNPVNKGDYFSEEKFTDIYLDGLKKSLDSKEPVFDYAVDIQNHGPYFYDKY GQTLPFNCTKPLTDEAKVCWGSYFIGVKDIDTMLGRVYDFIMSRQEPIIFVFYGDHLPAL GEDPDGYKQIGIDMKVDTLEDEITRHSTPFFITANEAGRKYLNVENAKLTKGSVISANFL GSSVLDMLGFTKADNFFEYNSNLRDYMPIISRHFIYTKDATYPKEKVGGEAAQKYMDYRA YEYYRVNQRKK >gi|281298355|gb|ADDO01000005.1| GENE 4 6739 - 7791 1290 350 aa, chain + ## HITS:1 COG:BH3771 KEGG:ns NR:ns ## COG: BH3771 COG0009 # Protein_GI_number: 15616333 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation factor (SUA5) # Organism: Bacillus halodurans # 9 347 13 346 348 318 50.0 1e-86 MKTSIIKLSEKDIDKDKKELKKITETFKEGGLVVFPTETVYGLGANGLDKEAVKKIYEAK GRPNDNPSILHIAKTSQLDELVSEIPKIAKKCINNFWPGPLTIIFKKSDIVPMEVTGGLD TVAIRMPSNKIAAKILKNVNLPIAAPSANISGRPSPTKASHVIEDLMGRVDIIVDGGKSI VGIESTVLDVTTDPPMILRPGKVTLEDLQKIDKSIGIDNTTIDAKDKSIPKSPGQKYKHY APKGMATCFVGEMDGIVNEINKRIKNSKGKVAVLATSQNLDKYVGADLILNLGDRDNLEE VANSLFDLLRKCDEEKVDVIFAEGFELKGMGLSIMNRLLKACAGRVVIGL >gi|281298355|gb|ADDO01000005.1| GENE 5 7801 - 8235 464 144 aa, chain + ## HITS:1 COG:CAC2880 KEGG:ns NR:ns ## COG: CAC2880 COG0698 # Protein_GI_number: 15896134 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose 5-phosphate isomerase RpiB # Organism: Clostridium acetobutylicum # 1 142 1 142 152 169 56.0 2e-42 MKIALGSDHAGFHLKEDIKKYLQEKQIETVDCGSFSDQRCDYPDFGHKVAKTVQNGSVDY GIVICGSGIGISISANKVKGIRCALCSEPLSAKLSRNHNNCNMLAMGARLIGLDMAKEIV DTFVQSKFEGGRHIRRVEKIEEDL >gi|281298355|gb|ADDO01000005.1| GENE 6 8232 - 8858 850 208 aa, chain + ## HITS:1 COG:SPy0392 KEGG:ns NR:ns ## COG: SPy0392 COG0035 # Protein_GI_number: 15674535 # Func_class: F Nucleotide transport and metabolism # Function: Uracil phosphoribosyltransferase # Organism: Streptococcus pyogenes M1 GAS # 4 208 5 209 209 275 62.0 4e-74 MSLKIMDHPLIKHKMTILRKKETSSMEFRQITTEIATLMGYEVTRDLELRDIDIETPLEK TVGQEISGKKISIVPILRAGIGMVDGLLTIVPSARVGHIGMYRDPETLKPVTYYCKLPKD IENRLVILLDPMLATGGTLVEAIDELKAKGATKIKSLNLLAAPEGIKAVQEKHPDVDIYV CEVDRCLNEHGYILPGLGDAGDRLFGTK >gi|281298355|gb|ADDO01000005.1| GENE 7 8827 - 9894 838 355 aa, chain + ## HITS:1 COG:CAC2875 KEGG:ns NR:ns ## COG: CAC2875 COG0472 # Protein_GI_number: 15896129 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase # Organism: Clostridium acetobutylicum # 21 353 8 344 344 223 43.0 6e-58 MPEIDYLVQNNMIIKYYLKPFLLAFVFTLLITPVVIYLAKKFNFLDIPKDNRRMHNKPMP IGGGLGMYIVISILSLYFLKLDRMLVMLLIGSTIIVVSGLIDDKKSLSPKMKLFFQVLAA LCLIIGGVKIEFFTNPFEAEQMLELINLLSIPITIFWVCGITNTINLIDGLDGLAAGISM ICAISMFFITRRINHIAVTFICVLVAGACLGFLPYNFNPAKIFMGDTGALYLGFMLSFIT IQGVMKQAAILMMFVPLLALGVPVFDTAFAMVRRKLHGKSIVEADKGHLHHRLLAKGLNQ KQTVLILYSISIIFGILANFIADFKSQVGLIVSILIIVAIILIGIFSGMISNKEE >gi|281298355|gb|ADDO01000005.1| GENE 8 9895 - 11001 1387 368 aa, chain + ## HITS:1 COG:CAC3064 KEGG:ns NR:ns ## COG: CAC3064 COG0381 # Protein_GI_number: 15896315 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine 2-epimerase # Organism: Clostridium acetobutylicum # 1 364 4 367 378 437 58.0 1e-122 MKVLFVFGTRPEAIKMAPVIKEIEKHKNIESLICVTGQHRQMLDQVLKIFNIKPDYDLNI FKKGQSLTDITTQSLRGLENILDEQKPDILLVQGDTTTVFAAALAAFYKKIKIGHIEAGL RSGNIYSPYPEEANRKLVSVISNFNFAPTQNNKNNLLREGYDEKNIFVTGNTVIDALKYT VKDNYKFENDLLNNIDYKNKDVILLTSHRRENWGKPMEDIFSAFSEIVNERENVEVIFPM HLNPLIREIAHRHFDGLDRVHLIEPLSYLPFSNLMNKVKFVVTDSGGVQEEAPSLGKPVL VIRNETERREGVEAGTAKLIGVKKENVYKNIIELLDNKKVYDKMSKAVNPYGDGKASIRI VEILEKNI >gi|281298355|gb|ADDO01000005.1| GENE 9 11093 - 11509 493 138 aa, chain + ## HITS:1 COG:FN0816 KEGG:ns NR:ns ## COG: FN0816 COG2030 # Protein_GI_number: 19704151 # Func_class: I Lipid transport and metabolism # Function: Acyl dehydratase # Organism: Fusobacterium nucleatum # 7 134 4 132 134 129 53.0 2e-30 MKGKTMDQIKIGDSASFTKTITESDVYTYAGITGDLNPAHINEVEAEKGIFKTRVAHGML TAGLVSAVLGMQLPGPGTIYLGQELKFTKPVYFGDTITAKVEATEIVKEKILKLKTTCTN QKGEVVLEGVASVMPPRA >gi|281298355|gb|ADDO01000005.1| GENE 10 11524 - 12711 1951 395 aa, chain + ## HITS:1 COG:CAC2873 KEGG:ns NR:ns ## COG: CAC2873 COG0183 # Protein_GI_number: 15896127 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA acetyltransferase # Organism: Clostridium acetobutylicum # 5 392 4 389 392 454 63.0 1e-127 MEDRIVIASAARTPVGAFGGAFKTVGPVELGIVAVKEAMKRAKVSPEMIDEAYIGNVLQA GQGQNVARQIVLGSGIPKECPAVTINIVCGSGLRAVSLAAQVIKAGDAEIVLAGGSESMS ASMYGIPSSRWGARMNDKTLVDLMIKDGLWDAFNDYHMGITAENVAEKYGITREMQDELA CRSQNNASRARAEGRFKDEIVPVEVKGRKGKVTVVEDDEFIRDGVTVESLAKLKPAFKKD GGTVTAGNASGINDGAAMLIVMKESKAKELGVTPLAYIISYATCGVDPKVMGTGPIPSST KALKLAGLTADDLDLIEANEAFAAQACAVNQVMKFDISKVNVNGGAIAIGHPIGASGARI LTTLLYEMQKRDSKKGLATLCIGGGMGTALVVGRD >gi|281298355|gb|ADDO01000005.1| GENE 11 12713 - 13495 1247 260 aa, chain + ## HITS:1 COG:CAC2712 KEGG:ns NR:ns ## COG: CAC2712 COG1024 # Protein_GI_number: 15895969 # Func_class: I Lipid transport and metabolism # Function: Enoyl-CoA hydratase/carnithine racemase # Organism: Clostridium acetobutylicum # 11 254 10 254 261 253 56.0 2e-67 MDYKYLKVDCKDNGIVVLTISREKTLNSLNTEVLKELSDFFDNIFEDDEVNVVILTGAGK SFVAGADIGEMATLSATEGYDFGKLGMDTLMKIEKGKKPVIAAVNGYALGGGCEIALACD IRIASKRAKFGQPEVGLGIIPGFGGTQRLIRAIGPGYAKEMIFTAKMIDAEQAERWGLVN HVYEADELLDKALEMAELIASKAPKAIQYSKSAIESGSQTDIETAMEIERTSFGLLFSTD DQREGMNAFLNKKKANFIGK >gi|281298355|gb|ADDO01000005.1| GENE 12 13505 - 14341 1059 278 aa, chain + ## HITS:1 COG:CAC2708 KEGG:ns NR:ns ## COG: CAC2708 COG1250 # Protein_GI_number: 15895965 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxyacyl-CoA dehydrogenase # Organism: Clostridium acetobutylicum # 2 278 3 280 282 317 60.0 1e-86 MKIAVIGSGTMGAGIAQSMAAYHQVVVRDINPDALKNAMEKIKKGYEKNVSKERMTKEEM EKAISNITLSPNIEDIKDCDLIIEAATENPKIKKSIFAELDEVCQEKTILASNTSSLSIT DIGQATKRPEKVIGMHFFNPVPLMKLVEVISGQKTDAKVKETIINLAKEIGKTPVEVEEA PGFVVNRILIPMINEAIGIYAEGVASKEDIDTAMKLGANHPMGPLELGDLVGLDIVLAIM EVLYSEFADPKYRPHPLLKKMVRAGLLGRKTKEGFYKY >gi|281298355|gb|ADDO01000005.1| GENE 13 14512 - 14814 351 100 aa, chain - ## HITS:1 COG:no KEGG:Apre_0011 NR:ns ## KEGG: Apre_0011 # Name: not_defined # Def: cupin 2 conserved barrel domain-containing protein # Organism: A.prevotii # Pathway: not_defined # 1 99 1 99 99 87 43.0 1e-16 MKRFNIFENVHFSEDKEIEEIIFENQNIKAIRIVSLNQKTDFMKEENLELVLVARGKAKL LINDEIINLKEGDFLEIPAHTSHKIIEQENVIWYCIFSKK >gi|281298355|gb|ADDO01000005.1| GENE 14 14801 - 15376 177 191 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|225088774|ref|YP_002660041.1| ribosomal protein S16 [gamma proteobacterium NOR5-3] # 5 179 14 209 312 72 29 2e-12 MIVSLKNIYKSFKNKKVFENFSLEIGENEKVAIIGKTGVGKTTLINLILKNIEADKGQVF VTDKISVVFQENRLLEDFTAYENINIVCPMTKEKCEEYLSLMKLDGNADTLVKNLSGGMK RRLALLRALIYPCQLLILDEAVREIDDETRKVILDSIKLFLDNKTLIYISHDYDDIKKLG IERVINLDEKI >gi|281298355|gb|ADDO01000005.1| GENE 15 15373 - 16113 396 246 aa, chain - ## HITS:1 COG:PA3443 KEGG:ns NR:ns ## COG: PA3443 COG0600 # Protein_GI_number: 15598639 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type nitrate/sulfonate/bicarbonate transport system, permease component # Organism: Pseudomonas aeruginosa # 55 215 60 218 262 59 27.0 5e-09 MKTSTTKKLKKFSVAIFWIVIWQIFALIINEEILIVSPFKVFLKTLDNLQDKTFYLAIFN TSWKILMGFLLGLFIGVILSFISYKFKTFKDFIYPLVQFIKSVPVVSFIMLLLMFLNSKY LSVFIPAIMSFAIFYTNILEGLLSIDYKILEMAKIFSISTKNKLKYIYLHSLKPYLYSGA SLAMGISFKAGLSAEVIGIADKTIGRMLYESKVYLDIANLFSYTFVAMIIAIIFEKIILF ILRRFL >gi|281298355|gb|ADDO01000005.1| GENE 16 16085 - 17152 1490 355 aa, chain - ## HITS:1 COG:TM0202 KEGG:ns NR:ns ## COG: TM0202 COG0715 # Protein_GI_number: 15642975 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components # Organism: Thermotoga maritima # 70 353 26 300 300 92 25.0 1e-18 MKKKLYSLFTIFLISTLMLTACGQGANSANSKENNKNTANVAVNNKKDTEENKSTDQSSK VDIKLGALKGPTSLGLVKLFDDSDNKNASNNYNFEIFNAPDEVVTKIVKGELDLAAVPAN LAAVLYQKTQGKIKVLNINTLGVLYIASKQDIKSLDDLKGKTIITSGKGATPEYALRYVL KQSGIDPDKDLTIDFKSEHTEVVGALAADENAIVMLPEPFLTVAKTKVQGLKTNLSLTDI WDKLPGDSQLVTGVMIGRSDFIDENKDAVNSFLEEYKKSVEYVNKNTEEAAKLSEKYDIV KAPIAQKAIPSCNIHFVSGDEMQKVLSAYLKTLFDQDPKAVGGKLPDENFYYKEA >gi|281298355|gb|ADDO01000005.1| GENE 17 17258 - 17782 557 174 aa, chain + ## HITS:1 COG:FN2033 KEGG:ns NR:ns ## COG: FN2033 COG0194 # Protein_GI_number: 19705324 # Func_class: F Nucleotide transport and metabolism # Function: Guanylate kinase # Organism: Fusobacterium nucleatum # 2 173 6 182 185 97 38.0 1e-20 MLYIIVGNSGSGKSTLAKDLKERGYNRIITYTTRPKRPGEIHGVDYFFIDREEFLKRYNN DEFIGPTKYAGNFYGTLKSDLEKAEKSKNPMIIIVDQNGLEKIKKLIPKAKCIYLDLDDS TREKRLEIRNENEETIKKRMKEVFDFSSMCDYKISADKSEAHTLNEVLKIIKNS >gi|281298355|gb|ADDO01000005.1| GENE 18 17790 - 17918 291 42 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MVGVRGFEPPASWSRTMRAAKLRYTPIHFIFYNKKLVIAILK Prediction of potential genes in microbial genomes Time: Mon Jul 18 11:56:01 2011 Seq name: gi|281298336|gb|ADDO01000006.1| Peptoniphilus lacrimalis 315-B contig00007, whole genome shotgun sequence Length of sequence - 24416 bp Number of predicted genes - 18, with homology - 18 Number of transcription units - 4, operones - 2 average op.length - 8.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 1551 1681 ## CLOST_0352 exported protein of unknown function + Term 1612 - 1667 11.5 + Prom 1668 - 1727 7.7 2 2 Tu 1 . + CDS 1757 - 6928 6807 ## Ccur_00300 hypothetical protein + Term 6977 - 7022 0.2 + Prom 7019 - 7078 8.5 3 3 Op 1 22/0.000 + CDS 7197 - 7979 1018 ## COG0263 Glutamate 5-kinase 4 3 Op 2 . + CDS 7957 - 9219 1271 ## COG0014 Gamma-glutamyl phosphate reductase 5 3 Op 3 19/0.000 + CDS 9219 - 10691 1341 ## COG0498 Threonine synthase 6 3 Op 4 . + CDS 10681 - 11526 1043 ## COG0083 Homoserine kinase 7 3 Op 5 1/0.000 + CDS 11510 - 12430 665 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily 8 3 Op 6 . + CDS 12448 - 13242 979 ## COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family 9 3 Op 7 . + CDS 13250 - 13714 204 ## EUBREC_2839 hypothetical protein 10 3 Op 8 9/0.000 + CDS 13711 - 15006 720 ## PROTEIN SUPPORTED gi|149195935|ref|ZP_01872991.1| Ribosomal protein L16 11 3 Op 9 1/0.000 + CDS 15008 - 16039 322 ## PROTEIN SUPPORTED gi|149199369|ref|ZP_01876406.1| Ribosomal protein L22 12 3 Op 10 1/0.000 + CDS 16029 - 16889 836 ## COG0169 Shikimate 5-dehydrogenase + Term 16890 - 16946 7.3 13 3 Op 11 11/0.000 + CDS 17254 - 18306 1129 ## COG0002 Acetylglutamate semialdehyde dehydrogenase 14 3 Op 12 10/0.000 + CDS 18358 - 19581 1710 ## COG1364 N-acetylglutamate synthase (N-acetylornithine aminotransferase) 15 3 Op 13 13/0.000 + CDS 19595 - 20479 1163 ## COG0548 Acetylglutamate kinase 16 3 Op 14 . + CDS 20498 - 21712 1587 ## COG4992 Ornithine/acetylornithine aminotransferase + Term 21722 - 21773 14.7 + Prom 21714 - 21773 8.4 17 4 Op 1 . + CDS 21835 - 23322 1700 ## COG1757 Na+/H+ antiporter 18 4 Op 2 . + CDS 23283 - 24395 1108 ## COG3457 Predicted amino acid racemase Predicted protein(s) >gi|281298336|gb|ADDO01000006.1| GENE 1 1 - 1551 1681 516 aa, chain + ## HITS:1 COG:no KEGG:CLOST_0352 NR:ns ## KEGG: CLOST_0352 # Name: not_defined # Def: exported protein of unknown function # Organism: C.sticklandii # Pathway: not_defined # 361 512 564 701 706 88 38.0 6e-16 VDAVNELEKLGENASDEKIKEAQEKINKIKDDTKKQELQGRLDLVIEKVKKKEEKTKAEE LQKAKEDAIKTINSLSNIDSEKDGFIDKINKAESIESVKEILEQAKAKSEQVAKEKEEFS RSVSLAKKKIFSLNKLTSEEKNEFVLSLNVAMDVRSINIVVMRATKSNAIKAVNKENMPD LTDEERREAEEKINKAENENIINDTVKNSNEQNELNKQIGKTLEESKINSSDIINNLKNL NSNESESFKEKITKAKTLEEVKSIVAEAKRLNISRNLEENIEIEKDKSIREIENFNYLSQ IKKDEFIRKIKNASSEIEISIIKEEARSENIRSRDYIVFPSADNSLFNGFGRTESRPLES PIISKTPEVKEKNLTKHSYTFVIGKKTYNTMSEGSEANKEMDVAPFIENNRTMLPLRCIA QLLGAEVEWNKKTRTASFTKDGLRADIQIDGNKIVLSNGKVIKLDTKVRIVSGRIILPLT NISQLFGLSNGNLDDGISQDIEWDNANKNVIINIKK >gi|281298336|gb|ADDO01000006.1| GENE 2 1757 - 6928 6807 1723 aa, chain + ## HITS:1 COG:no KEGG:Ccur_00300 NR:ns ## KEGG: Ccur_00300 # Name: not_defined # Def: hypothetical protein # Organism: C.curtum # Pathway: not_defined # 104 1443 123 1509 1816 1063 45.0 0 MMRNKIISLFLSILMLIGIIGPSIEVVYAEGNNLPINNENISTKSFDDFNTKESGAKLEE DNIIKPTDELIENKDKVNKKDIFLTENLEKMSGAEKATGGNNLTEIYLDSANGNDNNDGS KEKPVKTFDKAIEKTKDGDTLNVVSLSETNITVNKKIKLKFISDVTMQGNGIAIELKEGS HLCVAEGKTLNINGYNKGILVEKGAEINDGNYVLDKNEIAFSLDDGAKINGTSKDKLKIS AKEQTGRGFSYSSDSRFIGCTVYVEGKLGSSEQYSGLYMKGASLTTKNVWYYFDPCKQDD GTLKGGLHLDNSEFYVYKARDKDYRNSFALLGPSEIKNNSTVTADGSRVTVSEKLLVKDS KFVIKNSSDGGLNINYKPGEVIFENSTLETTNMQWTPSYGTGRTDGPCYLTFKGNSVVNT DNKDKNADCGGANRNTNSTYVVTGGSYLVAYNSSYNYNVTTPTNGKENGDEYLSYFTLKD SNINELKPINKNGQEYIYPVANASKDNKKHVFVPGAKVTFKLNNADASFSDKTNEDKEFK TIRGYKLDDVVGNVNPGVPKDKNGVKFLGWFYKTDKGEEKEFNWDENLTTDTEVYAKWER KTVIYHNGAGKDYISSVSKDAKNIEVLSFDDIVKEKADFKVEGKKFTGWTMASNGSGKVY NSKDQIDFAEGQSQIDLYAKYTDDEYKVSFSANGGAFSDNSIFKKNPAVFSIEKDANGGD VAVLNKRAKYNDKLFDLLNGFDHNNLKPDVKATKTGFVISNQHYFSDRAEAGGKGIRFDD HKNFIFNTSGENPQITKDTTYYLTWKDDPKIPNENKISSQETIDSDIRSDSKETSKDIKI ISENKEFALTGGVNVSSIKDKMNAIENIFNKEEKDFDKISLTGATSTFTATLTLPTEVEA PKNLQVEAKGLGDCFEVSDKKVNGQKITVTFKLKDGMTDYKKLKEAVLSTGGNDNTLSVT VNGLKLKDFDKIKDGEKFTIKGEVKGEFSAVAKDGNTIKKFDFKWTGNQSTEGKDVEAKD DSTIQYTIMVSKPVQLTLGGDLLVKKGKEAYNTEHDMVYPVDKEDFLTFDGKLDVSSIKN QIKSLKDDFDKNNNNTSNEITTKDVKSEFVAELTIPEGLEIPADVKATLTENNLFKVEST QANGNKITVKMTLKKDYTKFIDLYTDVTSVPDKLDLEISNIKVKDTAKGNLTVNGKVTGT FTGVATKDLKTKIFNYKWTGKQTPDGKDFTQREDDNDSINLTVNLTVNLPQELTLGGDIL IGDDTEHNALHEVKAGDVLEYTGRLDVSSIKNKIKLLQDSYQGDSNTITTENIKSEFVAE LTIPEGLEIPADLKATLTDNKLFEIKNGDVKRDGNKIIVKMTLKNGNYTKFSDLYNDVTS VPDTLDLKVPNIKVNDNVSDGSKLTVVGKVNGNFKGKATSQSGKNEVYNFKWKAEQTEDG KDFLIKDQRDNKTIQYTILVKNQVKPTPKPEPKPEPKPEHKYYYHHEKTGEPILNIDDHY AYMKGYPDKTFGPDKAMTRAEVTMMFARLLKERPEKGRKYIMPYKDIKENDWYAYAVTFM SEKKLVSGYPDGTFKPNSPITRAEFASIASRFDKLSEEARLKFSDVKENYWAYKFISSAE DKGWISGYPDGTFKPEKNITRAEVVSSTNRILNRYADLDFAKAHAQELAPMIDMDDSHWA YGPVVEAMNGHDYKRLSDGKHEKWIRLNGKRFTFPIPPYGEEK >gi|281298336|gb|ADDO01000006.1| GENE 3 7197 - 7979 1018 260 aa, chain + ## HITS:1 COG:lin1228 KEGG:ns NR:ns ## COG: lin1228 COG0263 # Protein_GI_number: 16800297 # Func_class: E Amino acid transport and metabolism # Function: Glutamate 5-kinase # Organism: Listeria innocua # 1 258 1 263 276 210 45.0 3e-54 MREFKRDIKKLVIKVGSSSITHEDGAANLEKIDDLCFELANLKNHGIDVVLVSSGAIAVG RKKLNLKERPKETSVKQAAAAVGQVSLINIYDRTLNHYGYSTAQILLTRQIETDRTMYEN AVNTFDNLAHLPAIPIVNENDTISTFEIKFGDNDTLSAIIAKIVNADLLIMLSDIDGLYT DDPRTNSGAKLIKTVDNIESVIDFAKETNSERGVGGMSTKINAAKMCLEKNIDVVIANAK DFKIIRQIMKGDEVGTYFTR >gi|281298336|gb|ADDO01000006.1| GENE 4 7957 - 9219 1271 420 aa, chain + ## HITS:1 COG:CAC3254 KEGG:ns NR:ns ## COG: CAC3254 COG0014 # Protein_GI_number: 15896499 # Func_class: E Amino acid transport and metabolism # Function: Gamma-glutamyl phosphate reductase # Organism: Clostridium acetobutylicum # 3 420 1 418 418 422 50.0 1e-118 MELTLQDKILQIGKNAKVSSRDLARLNAKEKNEILFQIKKNLISNCEYILEENKKDMDHG REIGMSQGLLDRLLLNRQRIENMADSLDTIISLNDPVGKTLSAFINSDGLNIAKRTVPMG VIAIIYEARPNVTLDAAALSLKAGSSIILRGGKEAINSNIAIASSIRDAIKSLSYNENMV QIIEDTSRDSSLYLMQLKGYVDLLVPRGSASLINSVVENAKVPTLQTGVGNCHVYVDSSA KVDMAIKIIENAKTQRVGVCNAMESLLVHKDVDKKFFAELQKLIDKYSIKVYAEKNSKEY LKNVDDAKEDDYGKEYLDMAFSMKIVDSLDEAIDHIYKYSTGHSEVIVTESYENAMEFTK RVDSAAVYVNASSRFTDGGVFGFGAELGISTQKLHARGPVGLDELVSSKFVILGNGQVRE >gi|281298336|gb|ADDO01000006.1| GENE 5 9219 - 10691 1341 490 aa, chain + ## HITS:1 COG:L0092 KEGG:ns NR:ns ## COG: L0092 COG0498 # Protein_GI_number: 15674085 # Func_class: E Amino acid transport and metabolism # Function: Threonine synthase # Organism: Lactococcus lactis # 3 485 5 494 496 399 46.0 1e-111 MKYISTRGKDKLSSSFEAIVKGIASDGGLFMPEKFNKVNLSQDIKDRMDYRDFAEVIIST IFDDIDKKILREIIDKAYSKENFSVDNALKVEEVNSLYIMELFHGRTSAFKDFALSILPY FILLAKDKDKKIGILTATSGDTGKAALEGFKNLKDTFIIVFYPTDGVSPIQKYQMLTQEG TNVYAIGIKGNFDQAQSALKDAFNDKELRDFLELKNILLSSANSINIGRLVPQIVYYFYA YYDLVKKSKIKDGEEINVAVPTGNFGNILAAYLAKVMGLNIGNFIVASNKNNVLTDFFNS GIYNANREFYKTNSPSMDILISSNLERLLYLKAPEELNSYMESLKNNGTYKISDECRKSL KEFKGYYAEDDEALEIIKKYYKNFDYLCDTHTAVCLKAVEDYLKENDDNRKILLASTASF YKFPASIGKALNISGSDDFNIIENINKITNIPIPENLKNLDKKEILQNIVIDKEYIKKEI MKILGDNDEN >gi|281298336|gb|ADDO01000006.1| GENE 6 10681 - 11526 1043 281 aa, chain + ## HITS:1 COG:CAC1235 KEGG:ns NR:ns ## COG: CAC1235 COG0083 # Protein_GI_number: 15894518 # Func_class: E Amino acid transport and metabolism # Function: Homoserine kinase # Organism: Clostridium acetobutylicum # 1 256 2 271 296 186 38.0 4e-47 MKIRVPATSANLGAGYDTMGMSLSLSNEFIFSPNEEDFDNSNLIYKSFKYLFDKEKKECP KVKIEVSENVPIARGLGSSATCIVGGLMGANVLLGDKYSKKEILSFATEIEGHPDNVAPA IYGGLVISTKVDDEVLFYKVEPSENLSYIVIVPDYPLKTALARSLVKTEVKLEDAIYNIS HSNLISRAIEKGDIDMLCKIYGDRLHEPYRKKLIVDFDKYKEIADRRNSAIFISGAGPTI LIISSKDNKDIYRDLKNVCPSTYKILELGAGEGVKIIGKDF >gi|281298336|gb|ADDO01000006.1| GENE 7 11510 - 12430 665 306 aa, chain + ## HITS:1 COG:STM4395 KEGG:ns NR:ns ## COG: STM4395 COG0697 # Protein_GI_number: 16767641 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Salmonella typhimurium LT2 # 5 275 10 280 308 122 29.0 1e-27 MEKIFKNKNTSALMALFAMFLWGSAIPMIKTTYKVLGITSKDPGSMILVAGYRFFLAGFF VIFYKFLFEEKSDRKKGFSLMFYIISTVVQITVAYIFYYNGLALISGVHSSIIQSTNFLM VLIFAHILIRDDKFNLKKVICVILGIIATLLSNVGGKVDGVVSLRGEVFIIISTALNALG TVIMKKWGSKENTYNISIFQFIFGGFLLIIMGLLTHQNPLIFNFKAIILLIYGSFISSTA FVIWYMLLRYQKASNVGAYKMFIPIFGAFLSVIILKDKFNIYLFVALFLTSFATNFLHSD LMEGKN >gi|281298336|gb|ADDO01000006.1| GENE 8 12448 - 13242 979 264 aa, chain + ## HITS:1 COG:VC0745 KEGG:ns NR:ns ## COG: VC0745 COG0483 # Protein_GI_number: 15640764 # Func_class: G Carbohydrate transport and metabolism # Function: Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family # Organism: Vibrio cholerae # 1 237 26 253 288 149 36.0 5e-36 MDLDINTLLEMKNKIEKDLANSGEFFYEDRPPKDEIRIKGKNDFVTEVDVKVQEYLKAKL LNILPHAQFIAEEKNNDDIDINKLTWILDPCDGTTNLVHGYKHSSISLGLAKDGKILLGM IYDPHTKELFWAIKEYGAFLGEKPIRVSNINNLKDALCAIGAGGFRINRTEETFDMIKGL FLNSQGIRRIGSAALEMCYVASGRTDAFLEEDLNIWDFAAGLLILKEAGALVKDFHGNDL ILNRKSGVICANPSLLRELEIYYY >gi|281298336|gb|ADDO01000006.1| GENE 9 13250 - 13714 204 154 aa, chain + ## HITS:1 COG:no KEGG:EUBREC_2839 NR:ns ## KEGG: EUBREC_2839 # Name: not_defined # Def: hypothetical protein # Organism: E.rectale # Pathway: not_defined # 1 148 4 151 205 96 34.0 3e-19 MLKKLEKNFEEIILMTLLVLMSIVLGLQIVARYVFNNSLSWSEELVRYLFIWSTFLGIPY SIKKGISIRVDFLSYRMSYKNQKRLKILNCIFIIILFAIISLFSFDVLNKSILSAQKSPA IGIPTWTLQFSVFISSLLSIYRAVENLFKIRREK >gi|281298336|gb|ADDO01000006.1| GENE 10 13711 - 15006 720 431 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149195935|ref|ZP_01872991.1| Ribosomal protein L16 [Lentisphaera araneosa HTCC2155] # 2 426 4 422 432 281 34 2e-75 MIISLLLLAFIILVIFGFPIAMVLLFLAVLPNLINPWFPADPQYIIRAMISGVNSFPLMA VPMFILSGHIMAKGKISDKIFNFFSYFIAEKKAGIPITCIVTCLFYGAISGSGPATVAAV GSMTIPLMEKIGYEKNYAAALVACAGGLGVIIPPSIPLIFYGQSSGLSVSDLFIGGILPG LLLGFLLIIYAYFYDLKKGQDRKKLILYSQEIKNRGLKNLFKESFFALLLPVIILGSIYR GIASPTEAAVISVFYSLFISMFIYKTINLRDMKEVLISSVSSYCNVLFIIAAATGFARIL TFLKTTEIVGNVIASSITSKVALLIFINIFLLLVGMVMDTTPAILILTPLFLPIIKTFSI DPIYFGVMMVVNLAIGFVTPPLGVNLFVASSLAEVSLDQLIKRVIPFIGVFLFGLLLITA FPQISLLFLGD >gi|281298336|gb|ADDO01000006.1| GENE 11 15008 - 16039 322 343 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149199369|ref|ZP_01876406.1| Ribosomal protein L22 [Lentisphaera araneosa HTCC2155] # 53 329 66 340 346 128 31 3e-29 MKKIIINCIVIMLLLSQTSCLQTGNRRKNHKMDVYNLYIACDSQEDTVTGIFMNEFARIL EEDSEGRIKMNTYPNSQLGSDSELIEAVQNGNISFCVGTSAPQVSFVPQAAIFDAPMAFK NLKIARKVLDGPLYDKLKSYYKEKDLRLLAIADQGFRLMSSNKNINSIKDFKGIKIRTME NKNHIAFWKAIGANPTPMAWPEVYIGLEQGFIDAQENPLELIVASKIYEKQKYIINTNHI LHSLMLIGSEKVLNDLPDDLQKTIDESAQKAKKIARAKTDLRYEGRLKIIKDYGCINKDL SPQLYKDMKEASKSIWLDMENQVDKDLINLFKSEIERSEKNEY >gi|281298336|gb|ADDO01000006.1| GENE 12 16029 - 16889 836 286 aa, chain + ## HITS:1 COG:lin0493 KEGG:ns NR:ns ## COG: lin0493 COG0169 # Protein_GI_number: 16799568 # Func_class: E Amino acid transport and metabolism # Function: Shikimate 5-dehydrogenase # Organism: Listeria innocua # 3 279 9 288 291 179 36.0 7e-45 MNISGNTKLIGLLGDPISHSLSPFMHNLSFNKVKKDYVYLCLPTGKKDLEKVLDTLKIIG ARGANITYPNKIEILKYLDEASEEVQIIGSCNTISIDENKKIKGYNTDGRGFVQSLKNNS IEIKGKTFGIMGLGGAGSAIATCLGLEGLKRLYVKEIDFDKAKTVKKRLEEKIKGLEIIL TKDQQDFAKNLDKMSLVINATPIGMGRSKDDSPMDPEYLRGFPLIIYDVIYSPLETTLLR KAKSYGLKVFNGIDMMINQGAISFNIWTGQEMDTKLVKERIVKLLK >gi|281298336|gb|ADDO01000006.1| GENE 13 17254 - 18306 1129 350 aa, chain + ## HITS:1 COG:TM1782 KEGG:ns NR:ns ## COG: TM1782 COG0002 # Protein_GI_number: 15644526 # Func_class: E Amino acid transport and metabolism # Function: Acetylglutamate semialdehyde dehydrogenase # Organism: Thermotoga maritima # 1 350 1 339 339 258 40.0 8e-69 MIKYSVVGAAAYACGEFLRLMVNYPDAELQMVADAFAKGDLIQNVHPQLQGFHDMEILDT SDESLRKLIEASDVVLAAVDAGTTCELADKVLKGGKKFIDFGADLRFRDPAVYEKWYKIK HTYPEMTRNCVYCIPEMNRKDAKGQNLISNPGCYPTASTLGLMPILKEGFVVENTIIIDA KSGYTGAGRRPMLNKMITESENSFRAYSLGGGHRHTPEIEQNIEYITGKHQMINFQPHLS PQIRGIEATIYATSNHDISNEDLYELYQKHYKDEPFVHVYPASKPVETKWTAGTNFCCIS PSYDARTKRFIISSVIDNIGKGAAGQAIQNMNIIFGKPETTGLLRPPMYP >gi|281298336|gb|ADDO01000006.1| GENE 14 18358 - 19581 1710 407 aa, chain + ## HITS:1 COG:TM1783 KEGG:ns NR:ns ## COG: TM1783 COG1364 # Protein_GI_number: 15644527 # Func_class: E Amino acid transport and metabolism # Function: N-acetylglutamate synthase (N-acetylornithine aminotransferase) # Organism: Thermotoga maritima # 13 407 3 397 397 356 51.0 6e-98 MDYKKIEGGGITSPKGFLAGATYCGFKSKNPEKPDLAVIYSEKEATCAAVFTTNIFCAAP VILDREILKKGKARAVVINSGIANAATGQKGIDNAKAVEKKAEELLGLGEDQVFVSSTGV IGQQLPVEKALKGLEKIVPTLSREQGTDAAYAIMTTDTVKKESAMEVEFSGGKVTIGAMA KGSGMIHPNMATMLVYITTDAKIEQAELQKYLSASVDDTFNMLSVDGDTSTNDSLFLIAN GASGVEIKTKEDKEKFAKLIKEICLDITLRIARDGEGATHMIVSHANNLPTDKDARLVAK SIVCSSLVKTAIYGKDANWGRIMAAAGYSGAKFDVSKADCFLESKAGKIAVMEGGFGTDF DEDKAKEILSEEEIYITVDLHDGDACATAYGCDLTYDYVKINGDYRS >gi|281298336|gb|ADDO01000006.1| GENE 15 19595 - 20479 1163 294 aa, chain + ## HITS:1 COG:MJ0069 KEGG:ns NR:ns ## COG: MJ0069 COG0548 # Protein_GI_number: 15668240 # Func_class: E Amino acid transport and metabolism # Function: Acetylglutamate kinase # Organism: Methanococcus jannaschii # 1 277 5 292 300 248 47.0 8e-66 MINIEEKVNALIEAMPFINQYKGKTVVVKFGGNAMINEEVKNAVIEDAVLLQALGVNVVL SHGGGPAINRMLERLNIESEFVNGLRVTTKEIIEVVEMVLSGSVSADLVKKVSALGGKAV SLSGSDGRIYFCKKNQSDYDYGYVGEVLSVNAEPIDALIKAGYIPIISPIGADDKGNSYN INGDTAAGALASALKAEKLILLTDIEGLCNDIKVKDVISYLNIKDVTKLKEIGTIAGGMI PKVDSCVEAINNGVNQVHIMDGRKPHSILYEAFVAEGGHGTVVGEAKDSVGIKW >gi|281298336|gb|ADDO01000006.1| GENE 16 20498 - 21712 1587 404 aa, chain + ## HITS:1 COG:MJ0721 KEGG:ns NR:ns ## COG: MJ0721 COG4992 # Protein_GI_number: 15668902 # Func_class: E Amino acid transport and metabolism # Function: Ornithine/acetylornithine aminotransferase # Organism: Methanococcus jannaschii # 16 404 11 398 398 373 48.0 1e-103 MNKKFTNNKDIVAAGKKYTMDTYGQYEVGMVKGEGSYLWDADGKKYIDLLQGVAVNALGH CYPDVVKATQEQAATLTQCANYFYIEPGVRLAKIIIENSCMDKVFFSNSGAESNEGAMKL ARKYQKMQGHPERYEVISFKQSFHGRTLATLTATGQDKSHLGFDPLPAGFRYALLNDMES VKQEYNANTAAVIIEPVQGEGGVIPCTEEFLKELRAFCTEKDIVLIFDEVQVGCGRTGYL FAHQGYGVEPDVMTLAKALGNGIPVGAFCARGKFADVLKPGNHGTTYGGNPIATATAAAA LTAIIENKLPERAQEMGAYLQERLNEMKKKHPVIKEVRGRGLIVGAVLDLEDAHVVTNPC FEKGLILNCTAGNVLRFVPALNIPKETLDDALEILEQVLTEIGK >gi|281298336|gb|ADDO01000006.1| GENE 17 21835 - 23322 1700 495 aa, chain + ## HITS:1 COG:FN1422 KEGG:ns NR:ns ## COG: FN1422 COG1757 # Protein_GI_number: 19704754 # Func_class: C Energy production and conversion # Function: Na+/H+ antiporter # Organism: Fusobacterium nucleatum # 31 462 10 440 473 335 42.0 8e-92 MENNKKQQEIKEGRMPHLWEALLSLAILIGVLAVGIIVYKVAPHVPMFVGACAAALMALR LGYKWERIEKMMMDGIYKALQSVIILIIIGILVGIWVDAGVVPAMIYYGLKIIHPSIFLV AALIICSITSLATGTSWGTVGTMGIALMGISLGLGINPAATAGACLSGAYFGDKMSPLSD TTNLAPAMAGTDVMTHVKFMILPTAVAYGLSIIFFGALGFHYYQGGGADLSSVAEISNAL KDSFTINPFLLIPPIVVIVCVALKMPAIPGIAIGAFVGGVMGALFGNSNLGTILDCGMNG FVSETGLESVDKLLSTGGLMNMMNSVSMTLIAMMFGGIMEDTKQLQVIVNKLKPLANTPA KLVILTEVTCFASNATMPEQYISIVVPGRMYAEQYHNMGLHPKTLSNALEGAGTVSGAMI PWNTCGVYMSTTLKMGVGQYLPYLFFNYTMPIVVAIMALAGLTCADMEGNRLNAKQANSK EVTWPTKPIDGTVRI >gi|281298336|gb|ADDO01000006.1| GENE 18 23283 - 24395 1108 370 aa, chain + ## HITS:1 COG:mlr5700_1 KEGG:ns NR:ns ## COG: mlr5700_1 COG3457 # Protein_GI_number: 13474743 # Func_class: E Amino acid transport and metabolism # Function: Predicted amino acid racemase # Organism: Mesorhizobium loti # 13 364 1 351 351 237 37.0 2e-62 MANKTNRRNSSYLTYPYIVCNLNKLRDNLAALTERCQIYNVSIVGVIKGFNGIAEIAKVY DGKVDYIASSRLEQLNVIKELNLQTPLMCIRISMPSEVDELVRICQISLQSDPSVIKLIN EAAKKQGIIHKIILMADIGDLREGFWNKDHIFEEALKIENEYDNLYLAGVGTNLGCYGSI VATPEKLQELVDIKDEIEKRINRKIDIVSGGGSSSLLTLLDKKIPKGINELRLGESVLMG LGTWGLDLDYLHDDVFELWTQVVEVETKPSFPVGQRGVDAFGNVVEYEDIGIHTRAIVSI GKLDYGNDPFALKTFDKNIKVLGASSDHTILDVTNAKEPTKVGDIIKFKISYSNLIYLTN TNTVRLIVRD Prediction of potential genes in microbial genomes Time: Mon Jul 18 11:56:33 2011 Seq name: gi|281298335|gb|ADDO01000007.1| Peptoniphilus lacrimalis 315-B contig00080, whole genome shotgun sequence Length of sequence - 252 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 250 255 ## gi|282882840|ref|ZP_06291445.1| hypothetical protein HMPREF0628_0425 Predicted protein(s) >gi|281298335|gb|ADDO01000007.1| GENE 1 1 - 250 255 83 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282882840|ref|ZP_06291445.1| ## NR: gi|282882840|ref|ZP_06291445.1| hypothetical protein HMPREF0628_0425 [Peptoniphilus lacrimalis 315-B] hypothetical protein HMPREF0628_0425 [Peptoniphilus lacrimalis 315-B] # 11 83 3946 4018 4211 98 80.0 1e-19 GSEVTPTNDVYKFTIKEDTTITVETESKTAPTKKYYSLTAPAEVTELKGTKGSGENANKY EENTEVSFKVNVGADKTLKTVKV Prediction of potential genes in microbial genomes Time: Mon Jul 18 11:56:40 2011 Seq name: gi|281298333|gb|ADDO01000008.1| Peptoniphilus lacrimalis 315-B contig00026, whole genome shotgun sequence Length of sequence - 691 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 687 352 ## FMG_1373 type I restriction-modification system specificity subunit Predicted protein(s) >gi|281298333|gb|ADDO01000008.1| GENE 1 1 - 687 352 228 aa, chain + ## HITS:1 COG:no KEGG:FMG_1373 NR:ns ## KEGG: FMG_1373 # Name: not_defined # Def: type I restriction-modification system specificity subunit # Organism: F.magna # Pathway: not_defined # 1 228 27 254 254 311 62.0 1e-83 QALFKEWFINNSENVDWTISTFSSLIQSTLNGDWGKERPIGNNTEKVYCIRGADIPEVNA GNKGKMPTRYILSKNLANKKLEAGDIVVEISGGSPTQSTGRCAAITQSLLDRYDSNMLCT NFCKAIKPRTGYSLFIYYYWQYLYEKGVFFSYENGTTGIKNLDFSGFIETEPIFIPPIDK VRVFDDYCKSIFNQVFANGKQSEQIALLRETLLPKLMSGELDVSEIDL Prediction of potential genes in microbial genomes Time: Mon Jul 18 11:56:50 2011 Seq name: gi|281298314|gb|ADDO01000009.1| Peptoniphilus lacrimalis 315-B contig00018, whole genome shotgun sequence Length of sequence - 20684 bp Number of predicted genes - 19, with homology - 17 Number of transcription units - 9, operones - 6 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 1/0.000 - CDS 97 - 708 465 ## COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen 2 1 Op 2 . - CDS 666 - 1538 835 ## COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen - Prom 1631 - 1690 7.3 - Term 1650 - 1694 3.3 3 2 Op 1 . - CDS 1709 - 2428 781 ## COG0171 NAD synthase 4 2 Op 2 . - CDS 2430 - 2807 449 ## COG1832 Predicted CoA-binding protein 5 2 Op 3 . - CDS 2812 - 3444 720 ## COG1739 Uncharacterized conserved protein 6 2 Op 4 . - CDS 3437 - 4705 569 ## PROTEIN SUPPORTED gi|149914878|ref|ZP_01903407.1| 30S ribosomal protein S2 - Prom 4820 - 4879 10.4 + Prom 4667 - 4726 8.7 7 3 Op 1 . + CDS 4795 - 7593 2398 ## COG5009 Membrane carboxypeptidase/penicillin-binding protein 8 3 Op 2 . + CDS 7580 - 7771 218 ## + Term 7848 - 7888 0.2 - Term 8055 - 8117 12.4 9 4 Op 1 . - CDS 8155 - 10635 3367 ## FMG_0026 hypothetical protein 10 4 Op 2 42/0.000 - CDS 10648 - 11442 825 ## COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components 11 4 Op 3 25/0.000 - CDS 11435 - 12085 224 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 12 4 Op 4 . - CDS 12078 - 13001 1001 ## COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin - Prom 13206 - 13265 10.9 - Term 13324 - 13365 -0.3 13 5 Op 1 . - CDS 13386 - 15449 1947 ## COG2217 Cation transport ATPase 14 5 Op 2 . - CDS 15451 - 15762 549 ## gi|282881836|ref|ZP_06290489.1| conserved hypothetical protein - Prom 15936 - 15995 11.3 15 6 Op 1 . + CDS 16092 - 17147 930 ## COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain 16 6 Op 2 . + CDS 17157 - 17789 298 ## PROTEIN SUPPORTED gi|52078547|ref|YP_077338.1| 50S ribosomal protein L25/general stress protein Ctc + Term 17797 - 17827 -0.3 - Term 17831 - 17871 4.4 17 7 Tu 1 . - CDS 17889 - 18497 709 ## COG3601 Predicted membrane protein - Prom 18675 - 18734 6.4 + Prom 18659 - 18718 3.7 18 8 Tu 1 . + CDS 18749 - 18850 56 ## 19 9 Tu 1 . - CDS 18845 - 20221 1403 ## COG1376 Uncharacterized protein conserved in bacteria + TRNA 20459 - 20542 68.8 # Leu TAG 0 0 Predicted protein(s) >gi|281298314|gb|ADDO01000009.1| GENE 1 97 - 708 465 203 aa, chain - ## HITS:1 COG:MA2369 KEGG:ns NR:ns ## COG: MA2369 COG2865 # Protein_GI_number: 20091201 # Func_class: K Transcription # Function: Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen # Organism: Methanosarcina acetivorans str.C2A # 11 111 277 378 510 72 37.0 5e-13 MPEYPEFAWFEGIVNALTHRNYSMRGEHIKVLIYDDRMEILSPGLLPNIVTIENILNQRY SRNPRIARILSEFGWVKEMNEGVKRIYSEMEKLFLNEPRYYEPNNNVLLVLENNILNRSL RSLDHIKNNISKIEFDKLTISEKRILYYMYNSGINLTTKDASQYLGKGITYCKKILKELE KKKLIKWYGSSVHDRTQYYKINF >gi|281298314|gb|ADDO01000009.1| GENE 2 666 - 1538 835 290 aa, chain - ## HITS:1 COG:PAB0790 KEGG:ns NR:ns ## COG: PAB0790 COG2865 # Protein_GI_number: 14521387 # Func_class: K Transcription # Function: Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen # Organism: Pyrococcus abyssi # 33 225 25 208 287 70 29.0 4e-12 MNDKLLGKISFYRFGRESQIFDRKSAKIKPLDILKHLVGFSNAEGGQLVIGIEDDGEITG FNYDGAHNIDEYKNIFITELRETPISVKFEILDVENEKRKKDNILVLSVDVSLDRVIKSY DGKVYLRQNDKTRELNFNQILQLQYDRGQRYFEDEIVPEATLNDIDENLINEYKIIMDIS DLSTEDVLKARNFYIDGKITNAGILLFGKKPSKFLPQARLRVIKYDGDKQKVGTEINIVK EKNFDSAIPNIIRNAREFINTQLREFQYLDKDGKFRLCLNILNLLGLKEL >gi|281298314|gb|ADDO01000009.1| GENE 3 1709 - 2428 781 239 aa, chain - ## HITS:1 COG:MYPU_6230 KEGG:ns NR:ns ## COG: MYPU_6230 COG0171 # Protein_GI_number: 15829094 # Func_class: H Coenzyme transport and metabolism # Function: NAD synthase # Organism: Mycoplasma pulmonis # 10 230 21 240 257 200 47.0 2e-51 MNYEKLRDDLVSWLRERAKEAHAKGFIFGLSGGIDSAVVAGLAKRVFPENSLGLIMPCDS IDDDKNDALKIAKSLDLEVKVVDLTNTYNELLKASFTSENKLARSNIKPRLRMTTLYYYG QDLGYLVVGPSNGSEWYVGYSTKYGDSGADIYPIANILKTDIFKLAKALDLPDFIIEKKP SAGLWKGQSDESEMGFTYEVLDSYIRGEKIPEEEIKKKIDGMHNRSNHKRVPVPMFKIK >gi|281298314|gb|ADDO01000009.1| GENE 4 2430 - 2807 449 125 aa, chain - ## HITS:1 COG:PAB1624 KEGG:ns NR:ns ## COG: PAB1624 COG1832 # Protein_GI_number: 14521329 # Func_class: R General function prediction only # Function: Predicted CoA-binding protein # Organism: Pyrococcus abyssi # 6 121 19 135 148 76 34.0 1e-14 MDALEMLKEKNWAVIGASIDKSKFSYKIPKILKEKGYKVYLINPKYDEIEGQKVYNNLKE VPGKIDAIDMIVNPKFAKGYLEEAKQLGIKNIFFQPGSFDKSLEKILEDSNFNVVNDCVY RRLNK >gi|281298314|gb|ADDO01000009.1| GENE 5 2812 - 3444 720 210 aa, chain - ## HITS:1 COG:lin2660 KEGG:ns NR:ns ## COG: lin2660 COG1739 # Protein_GI_number: 16801721 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 2 173 5 176 211 130 43.0 1e-30 MYNSVLSGGEGDFVEKKSRFIGGGYFVKSEEEALDKISQIKEIYKDASHNTYAYIIGEDA KIQRYSDDGEPQGTAGIPMLEVLKKEEMRNVLVTGTRYFGGILLGSGGLLRAYTKCARLG LLAAKKVVRENFNRTKFSYDYTYHGKILNYLTINGYKILQEEFTDIASLTLYVKENAPII KDLKDMTGAKIKIEVKACEELPTIDGKIMR >gi|281298314|gb|ADDO01000009.1| GENE 6 3437 - 4705 569 422 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149914878|ref|ZP_01903407.1| 30S ribosomal protein S2 [Roseobacter sp. AzwK-3b] # 41 379 43 385 425 223 39 6e-58 MEDVSSKKIERVITVGTDIGAYPNSLETSMKELDELCYADGAEVIGQMTQNLEKFNPKYL IGKGKVKEIKEMAENLEADAIVFNDELTGIQLRNLEDTIKKKVVDRTNLILDIFALRAST YEGKLQVELAQLEYQLPRLLGIKGWSRTGGGIGTRGPGEQIIETDRRRLLREIDKIKEKL NKAKKTRDTTRSKRMNSKIPTVSLVGYTNAGKSTILNRIKEDDSKEVFVKDMLFATLDPN SRKARLLSGREFIISDTVGFVSKLPTKLIEAFKSTLEEIKYSDLIVHVIDASSKDLEIAY DTTMNILQEIGIKDKKILTVFNKSDKIDLNSTTIPLKIKSQKIYISAKNDPDMNKLLKAI EENLPEEYIYTKLNFPYDDTDILYKLIERFDLKPIYKENFIEIELSLSKKEYSKLKRYVA NV >gi|281298314|gb|ADDO01000009.1| GENE 7 4795 - 7593 2398 932 aa, chain + ## HITS:1 COG:RP807 KEGG:ns NR:ns ## COG: RP807 COG5009 # Protein_GI_number: 15604639 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase/penicillin-binding protein # Organism: Rickettsia prowazekii # 57 779 49 693 787 222 27.0 3e-57 MKLKDLSKKQKLYISLLAILMLIILFVSILISSVLAIIVKTPDTILENLSNSFNQTSSIY SENGKLLEKIDSLEYRTIVPLKKIPKNLQMAFVAIEDHRFFEHNGLDPIGIGASILTNLK TGAFTRGGSTITQQMVRSIYLTNDKNFNRKIQEAYLALRVEENLSKGQILEAYLNRINLG QGAYGVQAASQTYFSKNVWELNTSECAILASIAKSPAEYPPFKTVPSQYISPEDILVGNR VVNGEEMYLILNQKSLDRQKIVLKRMYELNYIDKNQYKEALNFDIVGDLKPANLKHHTMS SYSTDFIKQDAAKYLAKYYKISLDEGEHKLFTGGYKVYSSIDENLQNKVENLYENFAQNF IENKSSKGGSKMLNFSLDEFGSIIYNNEILYYKRFDHFAEDFSFIVNPSDYNISSKNDIK INRRFFRLLGKKIDFIDLYVIDQRGILNIFDIGNLNIDSSYMAMKKNYLIIDGSFVKEHS DFYRIDQNKNLIINPTYINLNKNPIIEPQSASIIADNKNGFVKAIVGGLDVETNKAKILN RAVDSHRSPGTLIKPFTVYLPALENSYTLGTVIDDVPITTDGYMWPENNYKSFKGLMTLR MAIENSSNVVCAKILKDLGLEKAKEVLQRFNIIENNPSDYSYIDDNENSDKNDMNLNALG LGNMKKGISLAQITSMYQTLANEGDFKDLTAIVKIEDNTGKVIIDNRANHKNIINKETAY LLKDALKTNVEMGNAKGSKIDSATTYAYKGTNEFSSDFWLVGFSKKYTIGTWLGADSPKI SLNADEDIITKIFNELSSNINDDSKDEYRPSFIVEKNICNKSGKLGTELTNDAGANYKEI FIKGTEPTDYDDLYKKVLICVDSGLLSTQYCPAESVEYNVLFERPGGYDPKEHYNIYPDD YVEIPKKYCDIHTRSWYKENVKGSEDKNNEND >gi|281298314|gb|ADDO01000009.1| GENE 8 7580 - 7771 218 63 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKMIKPALIVGKYLIKRNIKKNKKNRFVKKFKLNLITSPKHGGKILYHLGRIKARKLILK NMK >gi|281298314|gb|ADDO01000009.1| GENE 9 8155 - 10635 3367 826 aa, chain - ## HITS:1 COG:no KEGG:FMG_0026 NR:ns ## KEGG: FMG_0026 # Name: not_defined # Def: hypothetical protein # Organism: F.magna # Pathway: not_defined # 85 794 46 699 773 371 36.0 1e-101 MNNKILKLTTIFTLTLSLCACNKAKNVSLSNNYQPQEESKYQVDDTTEVLLDDSNIDKDE IVKVIQHGDHWHVFTKDGKEHITYTDPNSISSDQLMEMVSVVSLDQLKTMNVKEIKVHGN HWHVFTDDGSEYLTYDNPKDAFPNIKITKYEASHGDHKNSTLAKSSKTIKFHESKNKLNS DEVVKILKHEDHYHVYTASGKEFITYEDPSSMYPGIKVGTYTGSHGKNQNLSVKNRSLAS ASANNARINKNLSAHNNIEFISTISGADMKNLDVGKILKHGDHYHIYTKDGREYITYDNP QNIFPNINIGTYVGSHKSNRNSLAKGNFTGANNLFSNTNANKNFSNNNIFSNPMANNLAN ANNALNDPNRVVKILKHEDHYHVYTASGQEFITYEDPRAMYPNASFGMYQGSHAPLNGGT NNGNSGFMPNLANNNMINPNYPNYPTYPNYPSMPNYPTYPNYPSMPNYPTYPNYPSENPQ NPNNFFLKTIGLRELSYLKINKIKKHGDHYHIYDIRGNEYISYVNLGPIGSTYRDVVIEK YVGSHGHNDKPHNNESDAWPKGVTKIVDHGDHWHLYVGEKEVGIVRVNPKNIYPNAEYIK EYIDHTDVEVNDNDMFSYGEVPAQLKKSVLAYLDENLQKMTNFGNINSDLPVYGSNGQRN NVFYWLHGSHYHAISIKQIIQNAKAGVYGGNSARDVVATLKYLISHKNIDIEEEKPELSV TMEEAISFLRNHYGPDASISNDFGQSILVSKNDEDKRFNLADFDKVNGVVIYKRGKLEDF KKTIKADGEIEKKENIEKFPEDKKEVTSENKNANQYNNTEIKADIN >gi|281298314|gb|ADDO01000009.1| GENE 10 10648 - 11442 825 264 aa, chain - ## HITS:1 COG:CAC2878 KEGG:ns NR:ns ## COG: CAC2878 COG1108 # Protein_GI_number: 15896132 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Mn2+/Zn2+ transport systems, permease components # Organism: Clostridium acetobutylicum # 1 255 1 255 268 147 40.0 2e-35 MVEMLSYEFMRRAFIVGSVLAIILPCIGFTILLKRLSMMGDTLSHASLAGVSMGLFIGIN PLLGSIIICIMAGFFIELISKKLKAYEEISTVIVLASSIGLAGIFSSFNGNAASISSYLF GSIVTISNGEFYLILGVSSLVIIIYRLIYDRLYLCVFDLQSAKLMGINTKLIDFIFTILA AVAISLSAKTIGSLIVSSILVIPVITAMQLAKTYKQALILSIILSVIFVYAGLIISYIFN LKPGSVIVIIAVLALALTMLFNRN >gi|281298314|gb|ADDO01000009.1| GENE 11 11435 - 12085 224 216 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 1 186 1 194 311 90 31 6e-18 MNKVVEIVNLSFSYDNKKILNNINLYLSEGDFVALIGRNGAGKTTLLKLILGELKTKEGN LRLFGETSKNYKKISYIGQNISSTYKNFPTSVEEVVKIHLRFLKKKVDIKKYLNLVGLYE HRKKTLGSLSGGQLQRLSLLIALIKDSKLILLDEPTASIDKKFSDEFLKILKDLARQGKT ILMVTHDVFNINTYVNKVYELRDKEVYPYKGELIYG >gi|281298314|gb|ADDO01000009.1| GENE 12 12078 - 13001 1001 307 aa, chain - ## HITS:1 COG:lin0191 KEGG:ns NR:ns ## COG: lin0191 COG0803 # Protein_GI_number: 16799268 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface adhesin # Organism: Listeria innocua # 34 304 31 310 312 182 38.0 8e-46 MNKNLRKFIFLFFLISLTFTACAKKQALSNNKDDKKVIYASFFPVYDLTSRIVGDKMEVR QIIEGNQEPHDFELQAKDMAKISNADLIIYNGANMEAFIDDLKEVAGDENKFLDLSKGLT LLTKGDNSETDKARVNPHTWLSIKNDIVELTSIYKKVSSMDPKNEKFYRENLNKSVEEFK NLDNKFQQELSKITDREKYFVVSHAAFNYLARDYGLKQIAVTGISPDEEPSAKELKVIAD FVKANNIKTIFFEGKATPKVAKTLAENTNTKTDTLYTMENLTPEEMQKGYLELMEENLEA LMRSFNE >gi|281298314|gb|ADDO01000009.1| GENE 13 13386 - 15449 1947 687 aa, chain - ## HITS:1 COG:SP2101 KEGG:ns NR:ns ## COG: SP2101 COG2217 # Protein_GI_number: 15901916 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Streptococcus pneumoniae TIGR4 # 1 684 1 682 687 445 36.0 1e-124 MKAKIAHRIRGRCRFATPYSFNQKEYGALKFELENFDGVISVDINSLNGSIVVEYKEEIL PNICKYILDLDLKAINDSDICPTMIENQGGIFEIVRDAFYKRFVFKLFLPLPVRNVMTLI RSFKYIKSGVKSIIKGNLNVDVLDASAISISLLTNEFKAASSIMFLLNLGEKLEEYTLKK SKDDLAKSLELNIDKVFVIDGDKRVLKSLRDVNVSDVVDCKMGSTIPVDGIVIGGEGFVN QSSFTGESMPVHKTYGKTVFAGTVLEEGNLYIKTTKKHNESRINNIIALIEDSERNKSLS QRKAETRADSLVKYSFIGAALAYIFTGSLIKAKAFLMVDFSCALKLTIPIAVMKAMSQAT ENGTLVKGGRYMESLAHAHTIVFDKTGTLTKSQPCVEKIITFDNYDENECLRIAACLEEH FPHSIANAVVEEARKRGLVHDEMHTEPKYIVAHGIASTINGQKALIGSHHFIFEDEKVPI TDEKEKIIDDLKENHSLLFLSIGNSLIGVICISDPIREDAKLTIKKLRGLGYKKIVMLTG DAENAARNVAEELDLDYYKSQVLPEDKADFVEKEKAKGRIVVLIGDGINDSVALSSADVG ISMKKGADIAKEISDISIGSDDLESIVDIVKISKGLEKRIAKDYREIISFNSLLIILGFF GLISNTSSAFLHNSSTVLNALNNMKRY >gi|281298314|gb|ADDO01000009.1| GENE 14 15451 - 15762 549 103 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282881836|ref|ZP_06290489.1| ## NR: gi|282881836|ref|ZP_06290489.1| conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] conserved hypothetical protein [Peptoniphilus sp. oral taxon 836 str. F0141] conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] conserved hypothetical protein [Peptoniphilus sp. oral taxon 836 str. F0141] # 1 103 1 103 103 105 100.0 8e-22 MKKKLINLAVGVALGLVGDKFLSSKSAKNLAVSAVAGGLKVKENLDKSLENIRENANDIL AEAKVKKEEDDKKEREKEEALNIENLANMAEEKKDEPKEDLED >gi|281298314|gb|ADDO01000009.1| GENE 15 16092 - 17147 930 351 aa, chain + ## HITS:1 COG:BH1261 KEGG:ns NR:ns ## COG: BH1261 COG0482 # Protein_GI_number: 15613824 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain # Organism: Bacillus halodurans # 2 350 7 358 371 396 54.0 1e-110 MKNKKVVLGMSGGVDSSVAAILLKNQGYDVIGVFMRNWADDGVCTATEDYMDVVKVASQL GIKYFTVNFEEEYRNQVFSYFLNEYKKGRTPNPDVMCNTEIKFKAFLNYALNFDCDYIAM GHYARTKNIDGKTYLCRGLDNNKDQSYFLSRVTEDALKKTLFPIGELQKDQVRKIAKDYG LSTALKKDSTGICFIGERDFNKFLDQFLFTKPGKIVDIQGNVLGEHSGLIHYTIGQRRGM GIGGKGNGEPFFVADKDLKNNLLIVAQGEKNPALYKKVFQVEDLFWISGQPHFPLKMTVK IRYRAKDEEALLEENEGKYFVKLKNPLKGVTPGQVAVFYNDEICLGSGIIK >gi|281298314|gb|ADDO01000009.1| GENE 16 17157 - 17789 298 210 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|52078547|ref|YP_077338.1| 50S ribosomal protein L25/general stress protein Ctc [Bacillus licheniformis ATCC 14580] # 1 210 1 208 208 119 31 2e-26 MELLKLSSRKEHGKNQVDKLRAEGIVPGVIYGKDREPLNVSGHENVILKLFQEVGTSVII EVEIDGQKTSVLFKEVQMHPFKNNMLHFDLYEIDMNHPITVVVPVVLIGRDEIKVQPSNL IQVINEVEVSCLPKYLPSTADVEVTDMQIGDTITVADLDISKDENIEVALEADEVVATLS APREESEEEETEVAGEVPTVAETEQKDSEE >gi|281298314|gb|ADDO01000009.1| GENE 17 17889 - 18497 709 202 aa, chain - ## HITS:1 COG:CAC2841 KEGG:ns NR:ns ## COG: CAC2841 COG3601 # Protein_GI_number: 15896096 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Clostridium acetobutylicum # 17 199 11 192 209 153 48.0 3e-37 MNRVNTGTFLSARAISRVAMLSVIGFLLMLIEVPILFIAPEFIKMDISELPTLLGAFTMG PIYGVLICGLKNILHIVIRGTTTGGVGELSNFIIGSVFAFVSASIYRKNKTYKRAIIGLT SGVLIMTALSMVSNYYVIFPLYAKIIPMEAIIGMGRAVSEKVTDLWSFMVYCILPFNLLK GLITSALMMLVYKKLSPIFKLG >gi|281298314|gb|ADDO01000009.1| GENE 18 18749 - 18850 56 33 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MIRILAFQFKNYIKVSKINVQDETYQIGHLFYL >gi|281298314|gb|ADDO01000009.1| GENE 19 18845 - 20221 1403 458 aa, chain - ## HITS:1 COG:CAC0747 KEGG:ns NR:ns ## COG: CAC0747 COG1376 # Protein_GI_number: 15894034 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 15 450 26 465 466 243 32.0 8e-64 MKKALKFILGLILILLIGIYFFGAYFYRSYFLPKTIVNGKDLSLTKKSDLYDNYNGIWKD YKINIISRDGNEDLDVSKFDYRDELLPNQDIKQPSFYWFLQSLYKKEYELKHRATYDISK FDQSLDDLKIVKNQNTPPQDAKIVYENNNFKIEDEVLGNTVDVSKLKSSIMKHLKDENKD IDLEKENIYYMPKIKSDDKGLLSLLNEYKSLFKLKIIYNFQDRKETLTGQDLIKLFHRTE DMKLVPDDDKVKSYIKSLASKYDTFKGTRDFNATGIGLIRVQGGIYGWSTEIKKTTEELI KALKERKDKELTPVYRTVAVNRAVNDLGNSYIEVDLARQNAWLYKDGKLILETKIVTGNP GENNATPTGTHKIWSRERDRFLTGDNYRSHVNYWLPITWTGVGLHDASWRSSFGGNIYMT GGSHGCINIPPSVMPKLFDNTFVGMPVVIYDSRTQKIS Prediction of potential genes in microbial genomes Time: Mon Jul 18 11:57:20 2011 Seq name: gi|281298305|gb|ADDO01000010.1| Peptoniphilus lacrimalis 315-B contig00016, whole genome shotgun sequence Length of sequence - 5834 bp Number of predicted genes - 8, with homology - 8 Number of transcription units - 4, operones - 2 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 2522 3819 ## Bsph_1896 Ig-like, group 2 + Term 2538 - 2587 11.1 - Term 2634 - 2674 5.1 2 2 Op 1 . - CDS 2771 - 3163 376 ## Csac_2108 hypothetical protein 3 2 Op 2 . - CDS 3194 - 3385 127 ## gi|282881849|ref|ZP_06290501.1| toxin-antitoxin system, toxin component, HicA family - Prom 3405 - 3464 10.9 - Term 3455 - 3488 2.3 4 3 Tu 1 . - CDS 3602 - 3943 286 ## gi|282881842|ref|ZP_06290494.1| hypothetical protein HMPREF0628_0225 - Prom 4003 - 4062 5.8 5 4 Op 1 . - CDS 4179 - 4376 312 ## gi|282881843|ref|ZP_06290495.1| serine/threonine protein phosphatase PfPP5 6 4 Op 2 . - CDS 4419 - 4832 473 ## gi|282881844|ref|ZP_06290496.1| hypothetical protein HMPREF0628_0227 7 4 Op 3 . - CDS 4900 - 5160 273 ## gi|282881846|ref|ZP_06290498.1| putative small-conductance mechanosensitive channel 8 4 Op 4 . - CDS 5153 - 5761 586 ## gi|282881848|ref|ZP_06290500.1| putative transposase Predicted protein(s) >gi|281298305|gb|ADDO01000010.1| GENE 1 3 - 2522 3819 839 aa, chain + ## HITS:1 COG:no KEGG:Bsph_1896 NR:ns ## KEGG: Bsph_1896 # Name: not_defined # Def: Ig-like, group 2 # Organism: L.sphaericus # Pathway: not_defined # 623 827 660 865 871 126 37.0 4e-27 FTAKADQKTVQKQTATPTITEPKAGDKTITGTSEPKAKVVVELPDGTKIETTAGQDGKWT ANVPEGKKLTEGQTVKAKATVTGKTESKEGTATVGKAEEQTAPPTITTPKAGDKTISGTG IAGAKVSITKEDKGATGQGSPIAKDVVVDEHGKWTANVPDGVNLEEGDTVLATQKEDGKD ESDQAQAKVKGKEDTTADPVIPFEPKDPEKPGDKDDKNIPTVNPKDNKPIKRDEYVVVGF KVEPKDSGTLTLGKQENKAVISALVKKDTAWAKFTMPTPNDGTDYVFWHWDKAPADKVAD GQVRVATFIKSGDEINPNDNNPLPKDFHKVTVAKGTGIGDNALFGKTYAVKKGDTLAKDK FPELKVTDGTQYKSPSWDVENPWTVAVADEDLTFTANAVSAVFDKNNVTKMEVKTQPKLN YVEGNATEGNLDLSKLVVTLTDNKGNTQDVPFKDLGTYGITANPENGTAMTVDGNNGNPV KLTKDKLTANTENLVVTKDNTTDPVIPFEPEEDKSKTPIVDPVDDGDTSISGKGEPGSHI IINIPGKDPINTTVDDGGKWIYPIDPAHEGDVIKVVQKEVGKKPSDPAYVTVGGRSIIVP SHDDGGYWWFGGGSFKPVETEEQVIDKTEHGIHIAYIFGYKDHTFRCEGKITRAEAASMI AHIAKLDLSDNSKPDFKDTPSSWYNAAINAMVKKNLMFADKNGNFRPNEPITRGEFARAI QFIDKENKKEAPFMDIKGHEFEEAINQAYANGRIAGYPDGTFKPDESITRAEAVTILNNF DGRMVRERGIEDVKKDLIKFTDLKPSHWAYYEIIEASNTHAYSRISNDSKEEKWSNLIK >gi|281298305|gb|ADDO01000010.1| GENE 2 2771 - 3163 376 130 aa, chain - ## HITS:1 COG:no KEGG:Csac_2108 NR:ns ## KEGG: Csac_2108 # Name: not_defined # Def: hypothetical protein # Organism: C.saccharolyticus # Pathway: not_defined # 1 130 1 133 138 93 41.0 3e-18 MDKNLVTYGAIFTKEDDDRFSIEIPDVDGAFTCADSITEGVNNCQEVIGVCLYNKEEYPV ASEINPKSLNDNQFLVYINVYLPYQFSKTKEVYKNKMLTVPVWLEALGKEKNINFSRVLQ EALKKELKIK >gi|281298305|gb|ADDO01000010.1| GENE 3 3194 - 3385 127 63 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282881849|ref|ZP_06290501.1| ## NR: gi|282881849|ref|ZP_06290501.1| toxin-antitoxin system, toxin component, HicA family [Peptoniphilus lacrimalis 315-B] toxin-antitoxin system, toxin component, HicA family [Peptoniphilus lacrimalis 315-B] # 1 63 1 63 63 114 100.0 3e-24 MKSYNSKELIKLAKKQGFRLDRINGSHYIFVNDKTKAEVAIPHPKGSFGIGIQRNILKKL GLL >gi|281298305|gb|ADDO01000010.1| GENE 4 3602 - 3943 286 113 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282881842|ref|ZP_06290494.1| ## NR: gi|282881842|ref|ZP_06290494.1| hypothetical protein HMPREF0628_0225 [Peptoniphilus lacrimalis 315-B] hypothetical protein HMPREF0628_0225 [Peptoniphilus lacrimalis 315-B] # 1 113 1 113 113 198 100.0 1e-49 MKYILITNSNNKVLIFREGDNEHLNKFLNTENKHITEDNYFTEEEWKKFDLYRHSANCSK SDEDFEEYCKMAKRVGLPKPERDSTIRPLHEYGKNAYRDKNGKWRMKINKQII >gi|281298305|gb|ADDO01000010.1| GENE 5 4179 - 4376 312 65 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282881843|ref|ZP_06290495.1| ## NR: gi|282881843|ref|ZP_06290495.1| serine/threonine protein phosphatase PfPP5 [Peptoniphilus lacrimalis 315-B] serine/threonine protein phosphatase PfPP5 [Peptoniphilus lacrimalis 315-B] # 1 65 1 65 65 111 100.0 2e-23 MLKLKNVEKMVDDLNTLRSQYLEKFDDYFPNIGISKEYEKEIILNCLSKGKDAYELGYFN LEDCY >gi|281298305|gb|ADDO01000010.1| GENE 6 4419 - 4832 473 137 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282881844|ref|ZP_06290496.1| ## NR: gi|282881844|ref|ZP_06290496.1| hypothetical protein HMPREF0628_0227 [Peptoniphilus lacrimalis 315-B] hypothetical protein HMPREF0628_0227 [Peptoniphilus lacrimalis 315-B] # 1 137 1 137 137 224 100.0 1e-57 MFEFDKKDWEKYLNASGFFDEYPNLHVDENFFIKSKEFYEDFGYYTPIGKFRDLNSDYEL RIERFEPLKYHKSREFNKDDYFAYIERRIPGYSPKITRKRKIFVEEARRCFEKYQRYSPG TPVDSFTGHEELHELQE >gi|281298305|gb|ADDO01000010.1| GENE 7 4900 - 5160 273 86 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282881846|ref|ZP_06290498.1| ## NR: gi|282881846|ref|ZP_06290498.1| putative small-conductance mechanosensitive channel [Peptoniphilus lacrimalis 315-B] putative small-conductance mechanosensitive channel [Peptoniphilus lacrimalis 315-B] # 1 86 1 86 86 135 100.0 7e-31 MNNEKLNGLFEIIELILNKEPSIVDSFLFDSLGSYIYIVFPKINDKVDSLVEDIADICED ISSGDDCRNEKEELREIYNEIKKELS >gi|281298305|gb|ADDO01000010.1| GENE 8 5153 - 5761 586 202 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282881848|ref|ZP_06290500.1| ## NR: gi|282881848|ref|ZP_06290500.1| putative transposase [Peptoniphilus lacrimalis 315-B] putative transposase [Peptoniphilus lacrimalis 315-B] # 1 202 1 202 202 314 100.0 2e-84 MLQIIIFCYSEGIFSSREIEKSCKYDLRIKYLGDLTYKEWYDKYIVEYNEKKEYENIVSI LGYKVVENVEKYKDIKYNSSERYEQINREVNTIQMIYNHNSFSDKFKERVKEIYYEFRSY DYELNMHGAERFIKRLNKNEFTKDEILDVLNKDFNMRQISDERPIKFYNNIQAIYSNNGI EIHNAIRRKKSWDYRRKPKTYE Prediction of potential genes in microbial genomes Time: Mon Jul 18 11:58:32 2011 Seq name: gi|281298259|gb|ADDO01000011.1| Peptoniphilus lacrimalis 315-B contig00044, whole genome shotgun sequence Length of sequence - 56445 bp Number of predicted genes - 47, with homology - 45 Number of transcription units - 25, operones - 12 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 70 80 ## + Term 171 - 205 0.4 2 2 Tu 1 . - CDS 94 - 183 67 ## - Prom 208 - 267 3.9 - Term 192 - 233 8.1 3 3 Op 1 8/0.000 - CDS 297 - 620 278 ## COG1687 Predicted branched-chain amino acid permeases (azaleucine resistance) 4 3 Op 2 . - CDS 613 - 1293 385 ## COG1296 Predicted branched-chain amino acid permease (azaleucine resistance) - Prom 1324 - 1383 13.7 - Term 1337 - 1382 3.0 5 4 Tu 1 . - CDS 1399 - 2610 1575 ## COG0426 Uncharacterized flavoproteins - Prom 2674 - 2733 8.3 6 5 Tu 1 . - CDS 2751 - 3581 930 ## COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control - Prom 3601 - 3660 9.6 + Prom 3660 - 3719 10.8 7 6 Op 1 . + CDS 3746 - 5200 1620 ## COG1488 Nicotinic acid phosphoribosyltransferase 8 6 Op 2 . + CDS 5254 - 6120 769 ## COG1032 Fe-S oxidoreductase 9 6 Op 3 . + CDS 6124 - 6960 916 ## gi|282881873|ref|ZP_06290524.1| hypothetical protein HMPREF0628_1180 10 6 Op 4 1/0.000 + CDS 6927 - 7559 691 ## COG0546 Predicted phosphatases 11 6 Op 5 . + CDS 7556 - 8803 1070 ## COG0628 Predicted permease + Prom 8874 - 8933 5.4 12 7 Op 1 . + CDS 8960 - 10099 1031 ## COG0053 Predicted Co/Zn/Cd cation transporters 13 7 Op 2 17/0.000 + CDS 10105 - 11487 1431 ## COG0569 K+ transport systems, NAD-binding component 14 7 Op 3 17/0.000 + CDS 11501 - 12952 1016 ## COG0168 Trk-type K+ transport systems, membrane components 15 7 Op 4 . + CDS 12949 - 14313 1305 ## COG0569 K+ transport systems, NAD-binding component 16 7 Op 5 . + CDS 14324 - 14992 587 ## COG0692 Uracil DNA glycosylase 17 8 Op 1 31/0.000 + CDS 15385 - 16209 1380 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 18 8 Op 2 34/0.000 + CDS 16218 - 16940 759 ## COG0765 ABC-type amino acid transport system, permease component 19 8 Op 3 . + CDS 16942 - 17670 570 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 + Term 17695 - 17738 8.6 - Term 17684 - 17723 6.0 20 9 Op 1 . - CDS 17776 - 18312 537 ## COG0778 Nitroreductase 21 9 Op 2 . - CDS 18312 - 18998 498 ## COG1671 Uncharacterized protein conserved in bacteria - Prom 19048 - 19107 13.2 + Prom 18974 - 19033 9.7 22 10 Tu 1 . + CDS 19116 - 20138 1026 ## COG1316 Transcriptional regulator + Prom 20203 - 20262 6.4 23 11 Tu 1 . + CDS 20358 - 20798 503 ## COG0071 Molecular chaperone (small heat shock protein) + Term 20898 - 20933 -0.6 - Term 20798 - 20833 -1.0 24 12 Op 1 . - CDS 20839 - 21042 219 ## PROTEIN SUPPORTED gi|163756262|ref|ZP_02163377.1| 50S ribosomal protein L20 25 12 Op 2 . - CDS 21039 - 21509 335 ## gi|282881851|ref|ZP_06290502.1| putative multidrug ABC transporter - Prom 21582 - 21641 7.8 + Prom 21450 - 21509 9.2 26 13 Op 1 . + CDS 21674 - 22981 1653 ## COG0124 Histidyl-tRNA synthetase + Term 22994 - 23028 1.2 + Prom 22987 - 23046 6.5 27 13 Op 2 . + CDS 23070 - 24896 2007 ## COG1217 Predicted membrane GTPase involved in stress response 28 13 Op 3 . + CDS 24901 - 26361 1342 ## COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes 29 13 Op 4 . + CDS 26361 - 26906 492 ## COG1451 Predicted metal-dependent hydrolase 30 14 Tu 1 . + CDS 26969 - 27217 279 ## gi|282881891|ref|ZP_06290542.1| conserved hypothetical protein + Term 27222 - 27273 -0.6 - Term 27201 - 27249 -0.8 31 15 Tu 1 . - CDS 27288 - 27419 66 ## gi|300813277|ref|ZP_07093634.1| aminopeptidase I zinc metalloprotease (M18) - Prom 27497 - 27556 7.1 + Prom 27587 - 27646 9.3 32 16 Op 1 9/0.000 + CDS 27841 - 28506 709 ## COG1760 L-serine deaminase 33 16 Op 2 . + CDS 28507 - 29391 1057 ## COG1760 L-serine deaminase 34 16 Op 3 . + CDS 29388 - 30623 1281 ## COG1301 Na+/H+-dicarboxylate symporters + Term 30664 - 30712 6.1 + Prom 30694 - 30753 8.7 35 17 Op 1 . + CDS 30778 - 31326 645 ## gi|282881892|ref|ZP_06290543.1| hypothetical protein HMPREF0628_1207 36 17 Op 2 . + CDS 31377 - 31826 519 ## gi|282881876|ref|ZP_06290527.1| hypothetical protein HMPREF0628_1208 - Term 31765 - 31805 4.3 37 18 Op 1 . - CDS 31827 - 32306 449 ## COG1576 Uncharacterized conserved protein 38 18 Op 2 . - CDS 32306 - 32806 874 ## COG2077 Peroxiredoxin - Prom 32831 - 32890 7.9 + Prom 32836 - 32895 7.6 39 19 Tu 1 . + CDS 32917 - 34089 1003 ## COG3919 Predicted ATP-grasp enzyme + Term 34107 - 34140 4.5 - Term 34377 - 34414 3.1 40 20 Op 1 . - CDS 34449 - 36320 1932 ## COG0326 Molecular chaperone, HSP90 family 41 20 Op 2 . - CDS 36398 - 37303 718 ## COG0679 Predicted permeases - Prom 37335 - 37394 10.4 + Prom 37422 - 37481 10.5 42 21 Tu 1 . + CDS 37587 - 51578 21134 ## FMG_0048 hypothetical protein + Term 51618 - 51657 6.0 + Prom 51749 - 51808 9.4 43 22 Tu 1 . + CDS 51885 - 53018 1274 ## Amet_4303 pyruvate ferredoxin/flavodoxin oxidoreductase + Term 53050 - 53082 3.0 44 23 Op 1 . - CDS 53118 - 54125 1004 ## COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family 45 23 Op 2 . - CDS 54147 - 54326 131 ## gi|282881855|ref|ZP_06290506.1| oligopeptide ABC transporter, oligopeptide-binding protein - Prom 54422 - 54481 10.4 + Prom 54436 - 54495 7.4 46 24 Tu 1 . + CDS 54516 - 55874 1119 ## COG0534 Na+-driven multidrug efflux pump + Term 55953 - 56001 5.1 + Prom 55994 - 56053 9.3 47 25 Tu 1 . + CDS 56078 - 56443 504 ## PROTEIN SUPPORTED gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 Predicted protein(s) >gi|281298259|gb|ADDO01000011.1| GENE 1 2 - 70 80 22 aa, chain + ## HITS:0 COG:no KEGG:no NR:no KFWDNGRRSWIVSHPSRVRGLK >gi|281298259|gb|ADDO01000011.1| GENE 2 94 - 183 67 29 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKGATVTPIYYNSVTGISIHAPVKGATLL >gi|281298259|gb|ADDO01000011.1| GENE 3 297 - 620 278 107 aa, chain - ## HITS:1 COG:FN1040 KEGG:ns NR:ns ## COG: FN1040 COG1687 # Protein_GI_number: 19704375 # Func_class: E Amino acid transport and metabolism # Function: Predicted branched-chain amino acid permeases (azaleucine resistance) # Organism: Fusobacterium nucleatum # 3 105 4 106 107 62 36.0 1e-10 MTNKMILLSILASSIATIITRAFPYIVFSKVKIPKDISYLGKVLPPVIMIILLVYSLRKV NITKAPYGLPELLAIISTGLIQKLFKNNLVSIFLGTLIYMILIRFKF >gi|281298259|gb|ADDO01000011.1| GENE 4 613 - 1293 385 226 aa, chain - ## HITS:1 COG:FN1039 KEGG:ns NR:ns ## COG: FN1039 COG1296 # Protein_GI_number: 19704374 # Func_class: E Amino acid transport and metabolism # Function: Predicted branched-chain amino acid permease (azaleucine resistance) # Organism: Fusobacterium nucleatum # 1 222 18 241 250 127 36.0 2e-29 MKEFKFALKNTLAMIFSYIFIGFACGILFYEKGISFIYAALAGIIIYAGSMQILLVPLIS SSTPILIIFFTTLFVNSRHIFYGLPFVERYKKIKGLRFILMVFTMTDEVFSIITSVDYDE NLDHNMVDFYILITLYITWIFSCMTGALVGNILPVNLTGIDFASVALFLVSVIGFFEDKK NRIPILIGLLTSLALLAILGKDLFLLPSIIISSLILTFIKRRPIND >gi|281298259|gb|ADDO01000011.1| GENE 5 1399 - 2610 1575 403 aa, chain - ## HITS:1 COG:FN0512 KEGG:ns NR:ns ## COG: FN0512 COG0426 # Protein_GI_number: 19703847 # Func_class: C Energy production and conversion # Function: Uncharacterized flavoproteins # Organism: Fusobacterium nucleatum # 9 402 7 403 403 325 43.0 8e-89 MEYLVTAPIKDNIYYIGTNDRQTEKFEGMWPLPNGVAYNSFLIKGEKNIIVDLVKINTIS VYVEKIKEIIGDEKVDYIIMNHLEPDHSSSVPELIDLYPDVEIIVSPKAVPMLKNFYGVT ENIRVVKDGEHLKLGDREFDFYLTPMVHWPESMVTYEKASKVLFSQDIFGGFGTLNGGIF DDQIQFDDHYKEEAARYFINIVGKYAKQALKALERLKDLEISTICTVHGPIWRKDPKRIV DFYISLAKQETVKGCVVIYGSMYGNTERMAEAVAKGLVRGGLNDVKIRDVTKTPLSYLLT DTWRYRGVILGSCSYDNSLFPPMNFLLTEISHQRMKKNFWAIFGSYSWSGGALKNLKKYM EDGKYNVLEHQPEIQGAATREELEDLINLGKEMAAKILESEEE >gi|281298259|gb|ADDO01000011.1| GENE 6 2751 - 3581 930 276 aa, chain - ## HITS:1 COG:FN0868 KEGG:ns NR:ns ## COG: FN0868 COG0037 # Protein_GI_number: 19704203 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Predicted ATPase of the PP-loop superfamily implicated in cell cycle control # Organism: Fusobacterium nucleatum # 11 262 20 269 277 216 44.0 3e-56 MKKENEVKEIKDIEKSLIKTYRRDIFRKFIKACKEYELIQDGDKIAVAISGGKDSLTLAK LMQELKRHRQVDFSLEFIAMDPGYIKENSDNLLYNCKKLGIPVKLYKSDIFEVAEKLTNG DSPCYMCARMRRGNLYSKAKELGCNKLALGHHFNDVIETILLNIIFAGDYKTMMPKLKAQ NFSDMELIRPMYLVKEEAIIRFMKSTGLNPLDCACTVTKKKSGNKRYYVKELVKSLLKEN ENADINILRSSENVNLGQILGYKNKGQKHLFTEFYE >gi|281298259|gb|ADDO01000011.1| GENE 7 3746 - 5200 1620 484 aa, chain + ## HITS:1 COG:CAC1002 KEGG:ns NR:ns ## COG: CAC1002 COG1488 # Protein_GI_number: 15894289 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinic acid phosphoribosyltransferase # Organism: Clostridium acetobutylicum # 7 481 12 487 493 635 61.0 0 MNKYNIEKNFTLLTDFYELTMANGYFQEGIGEKIVYFEMFFRSVPDDGTYAIIAGLEQLI EYFEDLHFAEDDIEFLRTKNIFSEDFLDYLRKFEFKCDVWALEEGSVAFPQEPLIIVRGP AIQAQMLETMVLLTINHQSMIATKTNRIVKAAGGRPVSEFGSRRAQGYSGANLGARAAYI GGVIGSANTLSDKLFGVPALGTMAHSWVQMFDSELEAFRAFAKVYPQNCLLLVDTYDTLK SGVPNAIKVFNEDVLPKGFRPKGIRIDSGDIAYLSKKARKMLDDAGFEDALIMASNSLDE FTIKNILVQGAKIDAFGVGERLITSKSDPVFGGVYKMTGIEGKDGKIIPKIKISENVTKI TTPGFKEIHRFYDKSSNKAIADVVSLHDEVLPEDKLEIFHPIYTWKRKTLNNYYSKKLLV QIYDKGKLVYKMPSLDEIRNKAQSEIDSLWDEVSRIDNPTEYIVDLSEELWKTRDALLKK YGKN >gi|281298259|gb|ADDO01000011.1| GENE 8 5254 - 6120 769 288 aa, chain + ## HITS:1 COG:AF1311 KEGG:ns NR:ns ## COG: AF1311 COG1032 # Protein_GI_number: 11498909 # Func_class: C Energy production and conversion # Function: Fe-S oxidoreductase # Organism: Archaeoglobus fulgidus # 1 288 1 287 287 238 46.0 7e-63 MQYYGNVFRPPSEARSLIIQATVGCAHNKCSFCYMYKDDNFIIRPLEDIKKDLIEMSQYG SYWRRIFLADGDALVLKTSDLLEILKTIKQYYPNIERVSSYATAGDINRKSIEELKALRD AGLEMLYIGFESGDDEILRKINKGLTYKDYVSAMAKCKEVGFKTSITIIAGLGGVELMEQ NAKGTAKIISETKPDYVSYLTMRIYKNTPLYLDYINGKFNMPNAEEILQEMKIFLENVDS EGTIFRSNHASNYVLLAGTLNEDKKGLIEAIDKTLKKKNFVPEVLRGF >gi|281298259|gb|ADDO01000011.1| GENE 9 6124 - 6960 916 278 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282881873|ref|ZP_06290524.1| ## NR: gi|282881873|ref|ZP_06290524.1| hypothetical protein HMPREF0628_1180 [Peptoniphilus lacrimalis 315-B] hypothetical protein HMPREF0628_1180 [Peptoniphilus lacrimalis 315-B] # 1 278 1 278 278 442 100.0 1e-122 MKVYRFNLDLEKFDNFLNTNRLFILEDKNISSKKDLDEFLLEEKNKKYKSLVNNFLKLDV GDFVWLRAKEEYAIGKIKSDVFFNEALEVSLDIKKVSYEEVPQKLKKVTRGSKLISINDE YIFNESKKIYDKSYDYSSYVDSGLITIKNNRSALDVGYENTNIKNFPPALRKSGQVAIYK DRENIKINYKSHKTPEKEKHEEKNFDLIFEMNPKEEKEEKSLLPLRVSDINMESLPLAYS KFLKLQFDFAKEFTKTSMENLAKVNIKFWQEYLKLLKE >gi|281298259|gb|ADDO01000011.1| GENE 10 6927 - 7559 691 210 aa, chain + ## HITS:1 COG:CAC0418 KEGG:ns NR:ns ## COG: CAC0418 COG0546 # Protein_GI_number: 15893709 # Func_class: R General function prediction only # Function: Predicted phosphatases # Organism: Clostridium acetobutylicum # 13 174 5 167 216 58 28.0 6e-09 MARIFKVVKRMKLILSLEKFLIDCSMGMKKAAKIAGSVMDYKPLDEIDLEKFCSPSIIKS AMEVYNIKEIEAKVFFKWYGDYFNRIGKYENEYYKGALELLNDLKKDYDISVFTELYSLQ ARQILRKKDILKDFELVGGKEKDRENNDKYHILEALVKNLKTKDEIVFISSDMEDIKVAS ELLLNNIYYDFSENKEINVDFIRDKLEQIK >gi|281298259|gb|ADDO01000011.1| GENE 11 7556 - 8803 1070 415 aa, chain + ## HITS:1 COG:SPy1117 KEGG:ns NR:ns ## COG: SPy1117 COG0628 # Protein_GI_number: 15675097 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Streptococcus pyogenes M1 GAS # 34 395 13 366 382 161 31.0 2e-39 MIINKDDKDKDLEIEEKKLHLSEGKIRFSNDVYRNIFLVLLGFSTVCYLFLNQKGISKIF VTLLSIMFPFILGGVLAFMIKIVLNFFEEKLFNKIKSARFQKHKRKISILVSIFVIFLII FIILRIVVPQFISSISKLQTALPPLIQKAIDKSRNIAFIDEYSDKMQKIYDHLSVSKIFD QIREFVKNQGDNSSISTAFQRAYSTATNILGGIVNFVLALITAIYILSDKEHLEYQSKRI VYSIFSQKTSGKIFHVFKLLHQNFERFIRGQIIDSTVLGIIVFIFSFLAKMPNATTLGVL AGVTNLVPIIGPFIGGFMGFVLIVIDDFSKAIIFVIFIFIMQQVESNLIYPKLVGGAVGL PALWTLIAITVGGSLFGVVGMWVFIPLTSTIYTLIGEYTKYKIDKKDIDLRMRKV >gi|281298259|gb|ADDO01000011.1| GENE 12 8960 - 10099 1031 379 aa, chain + ## HITS:1 COG:CAC0606 KEGG:ns NR:ns ## COG: CAC0606 COG0053 # Protein_GI_number: 15893895 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted Co/Zn/Cd cation transporters # Organism: Clostridium acetobutylicum # 22 373 39 394 403 200 31.0 3e-51 MTDNKYKKNIGKINRVNELTKTSVLGLLSNLFLFMIKVLMYFFTGSMSILSEALNNLSDC SSSIISIMGVKFAQKPNDKSHPYGHGRIEYLITLVISGMVLVVGGNFVYFSFNKIIHPQA LNYPFYTLVLLFLSLLVKIWQSGFYLKKSKLLNSLALKAQSKDSLSDCLITSVVLIGVII QKFTGLKIDSYIGLLVALFIIYTAIELINQTISILIGKGLSEELRQEIISKVSSYEGISN VHSIIVTDFGPENIIVILDAEIAYNLSLEEAHNIVDKVEREVSKLLNIKLIIHTDPHGSA SKLIEQIRKKLHIIIRENLNLYSVYDIVNDGDTFHIELDFNGRIIKDENAKEELKETVVK SLKEEFPDYNFVIRLLAVF >gi|281298259|gb|ADDO01000011.1| GENE 13 10105 - 11487 1431 460 aa, chain + ## HITS:1 COG:SP0480 KEGG:ns NR:ns ## COG: SP0480 COG0569 # Protein_GI_number: 15900395 # Func_class: P Inorganic ion transport and metabolism # Function: K+ transport systems, NAD-binding component # Organism: Streptococcus pneumoniae TIGR4 # 1 446 1 449 449 241 32.0 2e-63 MKALIVGVGKLGFKLAGALLDEGYEICVIDNNEDVIENVSNVLDVFSVCANALDFGVLME LDISTFDIVISTTTNDEANVILCSISKKLGAKYSIARVRDPEYRKYLKFMSDELDIDYII NPEYATAKVIDKYLLKKYQLYANEVAGGKIRLVEFNIGQDPEFIGKKLIDLNTFDKLIVA AISRDGKAIVPNGMTELKADDVILLSGITEDIEAFDKKYSGISKEKTVRKVMILGGGKVG FYLASLLVNEKIDVTVIELNRDKCVNIKEKLPGVEVINGDGTDINLLEEEMFHTFDAYVA ATGIDEANLLMSLVVKRAGIYKSVAKISRTNYDGIIDKLNIDAVFNKSYITASEILKVIR GNDSQAVSLLLNAQVECNEFILKKKLAICGQSLKDLALPKGILFIALIRGEETIVPNGDT VLEDGDKAVVFATKNEISNMKNLFKRTKIIDGIYNKLTKN >gi|281298259|gb|ADDO01000011.1| GENE 14 11501 - 12952 1016 483 aa, chain + ## HITS:1 COG:MA1481 KEGG:ns NR:ns ## COG: MA1481 COG0168 # Protein_GI_number: 20090340 # Func_class: P Inorganic ion transport and metabolism # Function: Trk-type K+ transport systems, membrane components # Organism: Methanosarcina acetivorans str.C2A # 1 472 1 470 476 305 39.0 2e-82 MNRSLIVKILGIILLIESFFMIPSLAISLYMQDGSSIGFIITIILLIIVGALTRFIETKH RTLAPADGLVIVTYAWILVSIFGSLPLIIDMNMSFPDAFFEIVSGFTTTGASVINNIESF PKSVVLWRSITHWIGGMGILVFTVSLLPKLGVGGFQIFKRESPGPVKGKIEAKTSDTAKK LYIIYVVITILLFLCLKFFGMDVFDALVHTLGVVGTGGFSSKNTSIMGYSTPIIFTMSFF MIVCGNNFSIYYSLYRRRFNEIIKNEELRLYLFITIAAILLISVDLYLKGVASPFISFRD ATFQVTSIESTSGFVSTDYDLWPSFSKYILFVLMFIGSCAGSTAGGLKVIRIVVLFKSIK REIKRVIHPRAILPISLNGRILSEELVQGINGFFGIYMIVFVFSVGLITLSGEDLITSMS SVVTMLSNVGPGFASVGPTKNFYYFNDFFKIYFAFLMLLGRLEFFTVLAIFSRKRYFKEK VLK >gi|281298259|gb|ADDO01000011.1| GENE 15 12949 - 14313 1305 454 aa, chain + ## HITS:1 COG:HI0625 KEGG:ns NR:ns ## COG: HI0625 COG0569 # Protein_GI_number: 16272568 # Func_class: P Inorganic ion transport and metabolism # Function: K+ transport systems, NAD-binding component # Organism: Haemophilus influenzae # 1 433 1 442 458 146 26.0 9e-35 MKILIIGAGRVGSELVDVLSYEDAEILVIDKDSGNLPSLKKSNVSYINKDILDGDILNEI DFSSFEYVLAVTNKDRTNILIASLTKNLSTKTIIRLNIVDSLDEIEYLKKSLNIYEIVNP EYEVGKFIKNIIGNSSYYTADYFGKGKIEVAGHLVDTDGEFDNIALKDIGSLATILVVAI LRDGKFFTPNGQTILQKGDYLYLMGLSKDISNFKMEHFLIKSTRKSRDVTIIGGNLITNT MISEIEDINLKIIEEDSKKVRLFRDKIPKAFVVNRPYRDENLLNEENIREDSIFISMTDN DELNIVLGLMAKSLRIERTIISLNTNIYSKILDPLNMYSHVEPFTVMANEIVNKVSQGSK ISVNFMFAGKAQVFEISTSEKFPHINKKIKEMNIPKGIIIGGIIRSDGLAIIPRGETIIE KNDKLVVFCTDDKKEELKNFIDTKKKNYFSSLFK >gi|281298259|gb|ADDO01000011.1| GENE 16 14324 - 14992 587 222 aa, chain + ## HITS:1 COG:BH3850 KEGG:ns NR:ns ## COG: BH3850 COG0692 # Protein_GI_number: 15616412 # Func_class: L Replication, recombination and repair # Function: Uracil DNA glycosylase # Organism: Bacillus halodurans # 1 221 1 221 224 263 55.0 2e-70 MDFLKNDWQELLKDEFQKDYYKNLRELLIKEYKNYQIYPKASDIFNAFNYTSYKDLKVLI LGQDPYHNPNQAHGLAFSVNKGVKVPPSLVNIYKELHDDLGIGPFKDGYLKSWTQEGIML LNTTLTVRKNAPMSHSKIGWEIFTDRVIEIIDEKKEPVVFILWGAHARSKKKLIKNKNHL VIEGPHPSPLSAHRGFFGSKPFSRANKFLMERGIDSPSWEVK >gi|281298259|gb|ADDO01000011.1| GENE 17 15385 - 16209 1380 274 aa, chain + ## HITS:1 COG:SP0453_1 KEGG:ns NR:ns ## COG: SP0453_1 COG0834 # Protein_GI_number: 15900370 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Streptococcus pneumoniae TIGR4 # 1 272 1 266 325 217 43.0 2e-56 MRKILKLLVALSLVLTLVACGKDKKEDENVLKVGMECGYAPFNWTQLDDKNNGAQIDGAN EYAGGYDVMMAQKVAQALGKKLVIVKTEWDGLPPALQAGKIDLIMAGMSPTPDRAKEVQF TEPYWKSQYVMIVKRGSKYENAKSLNDFKGAKISAQLNTVHYDIIDQIDGVIKEEAQSSF PELRVALQSGVIDGYVAEVPEAKSVESATKDLVSVNFPEGQGFTVKDNSNLVSAAVKIGN KELLDACNKVFSNISEDERQEIMNTAVKNQPANN >gi|281298259|gb|ADDO01000011.1| GENE 18 16218 - 16940 759 240 aa, chain + ## HITS:1 COG:SPy0277_2 KEGG:ns NR:ns ## COG: SPy0277_2 COG0765 # Protein_GI_number: 15674455 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Streptococcus pyogenes M1 GAS # 15 226 9 221 239 209 55.0 5e-54 MTKVLELFTRYKPLFFNGTLNTLKISIVATIFGLIIGLITGTIRTLPKKNGFGGFLQKVV NLLISAYITLFRGTPMMVQASLLFYGFPLFLGVDVDKILTAYIIVSVNTGAYMSEVVRGG IISIDKGQWEASRASGLSHIQTMLYVIGPQTLRNILPATGNEFVINIKDTSVLNVIGVGE LFFAAKTVAGQSYSYFETYFIILIIYLLLTTVITEILRQIEKRLEGPVSFELKMGNQQQV >gi|281298259|gb|ADDO01000011.1| GENE 19 16942 - 17670 570 242 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 3 241 1 242 245 224 45 1e-57 MEILRIENLRKKFGTNEVLKGISLNVNKGDVISIIGKSGSGKSTFLRCINRLEEASEGNI YFEGKNIMDKDCDLKKIRSKMAMVFQNFNLYNNLNVLDNCTLAPTKVLKISKKEAEEEAI KNLSKVGMDAYVKARPSHLSGGQKQRVAIARALTMNPDIMLFDEPTSALDPEMVEEVLNI MVELAKEGRTMIVVTHEMEFARDVSSKVIFVDKGIIAEEGSPQEIFNNPKEDRTKEFLKR IL >gi|281298259|gb|ADDO01000011.1| GENE 20 17776 - 18312 537 178 aa, chain - ## HITS:1 COG:FN1254 KEGG:ns NR:ns ## COG: FN1254 COG0778 # Protein_GI_number: 19704589 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Fusobacterium nucleatum # 1 156 1 152 171 61 31.0 8e-10 MDFLEIAKKRQSTRNFDPSKKVPQELLERCLSAMVLSPSACNAQPYFYYVLEGKKAKKAA KLTGKMNAFSKDAPVIIVVCEENYNLTAKIGSIVKNQDYKSIDIGISVAYLTSEATSLGL STCIMGWFDEKELGELLKFKGKIRLVIALGYSKDDELREKKRKTKSAIYKILDDESIS >gi|281298259|gb|ADDO01000011.1| GENE 21 18312 - 18998 498 228 aa, chain - ## HITS:1 COG:CAC2825 KEGG:ns NR:ns ## COG: CAC2825 COG1671 # Protein_GI_number: 15896080 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 1 144 1 147 148 83 29.0 3e-16 MKVYLDSDAASIRDLAVEVCKEEKVEIILVKNYSQDFSTNYGTIINVDVESDAADLYIVN HLEKGDLVLTNDKGLSSLALARLAYVMDFGGNTINNLNIDSYLASRHMSRLMREQGIFTH FKKRKKSENINFESSLREFLRRNKKMLKLLVSSHCPDCPPALKYVEDNKINVEIIDITSS IKNLKYYLSFRDNNPYFDKIKKDGKVGIPLFIEDEGNKFYTFEEFKEK >gi|281298259|gb|ADDO01000011.1| GENE 22 19116 - 20138 1026 340 aa, chain + ## HITS:1 COG:BH3647 KEGG:ns NR:ns ## COG: BH3647 COG1316 # Protein_GI_number: 15616209 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus halodurans # 3 297 16 303 359 136 29.0 7e-32 MKRFYTIFVSLVILILLSGLALAFLMVPRGEEVATTTSTKKEEVNKEPRKINVFNQNKDP INVLMIGLDSSKVTYEVDENSKRADTLMLLTIDPKKNKAHIISIPRDTYYKLKGYDNYKI NAGYSRGGLKLQISSVEDFMDCKIDHYIVVEYDAVKEFVDAIGGVEIYTPEYSYNDPSTI PPLEINFHEGVHNLNGEDAVKYLRIRKYYEDQDIGRIHAQQGFIMKVFEKLKNPSTIFKL PKLVSIANKYVKTDFSYGQLSYLAYYAMSLEKDDIEFNTLQGQRKVLNNIDYYKVDKDYA RGVLKEFLNREENEENLTEEELEKKKENEKARSQLNFESQ >gi|281298259|gb|ADDO01000011.1| GENE 23 20358 - 20798 503 146 aa, chain + ## HITS:1 COG:CAC3714 KEGG:ns NR:ns ## COG: CAC3714 COG0071 # Protein_GI_number: 15896945 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone (small heat shock protein) # Organism: Clostridium acetobutylicum # 40 134 42 138 151 74 42.0 6e-14 MDMSIKPYTGSLLDQRFGDFYDMIDSFFNDEYSKERALRSSSFKVDISEEEGSYKIEAEL PGFKKDEINIGLNDGRLTISAKKSEETKDEKKNYIHKERKTQEMSRSMFFKDIDENGLKA RLEGGVLEITVPKKPQVQTSKKIEIE >gi|281298259|gb|ADDO01000011.1| GENE 24 20839 - 21042 219 67 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163756262|ref|ZP_02163377.1| 50S ribosomal protein L20 [Kordia algicida OT-1] # 2 66 3 67 67 89 66 6e-17 MIKVELDLMLIKRNITLTELSEKVGITIANLSILKTGKAKAIRFSTLSEICKALDCQVSD ILKYVDQ >gi|281298259|gb|ADDO01000011.1| GENE 25 21039 - 21509 335 156 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282881851|ref|ZP_06290502.1| ## NR: gi|282881851|ref|ZP_06290502.1| putative multidrug ABC transporter [Peptoniphilus lacrimalis 315-B] putative multidrug ABC transporter [Peptoniphilus lacrimalis 315-B] # 1 156 1 156 156 191 100.0 2e-47 MKNYRPLIIKISLIICILAILLLSYVLHEFSFQLAEEYPELSYMRLPMFILCMGVSLSTI IAIIFAFFALLNYEKNQIFTIKLYKNLKNISKSLYIAIIFEILIHIYSHINVPYPITNFF VKIVILFYFILSQIFLLIADIIYKGEKIKKDWDLTI >gi|281298259|gb|ADDO01000011.1| GENE 26 21674 - 22981 1653 435 aa, chain + ## HITS:1 COG:CAC2740 KEGG:ns NR:ns ## COG: CAC2740 COG0124 # Protein_GI_number: 15895997 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Histidyl-tRNA synthetase # Organism: Clostridium acetobutylicum # 4 429 5 430 430 377 46.0 1e-104 MSIVKPSTLPGFMELLPKEQILFNQMRDIIRKNFERAGFLPIDTPVIEKSEVLLAKGGGE TEKQIYRFTKGDTDMSLRFDLTVPLARYTVEHFSELSFPFKRYAIGKVYRGEKAQKGRFR EFYQCDIDTIGNGELSIANDAEFPVVIYHTFKDLGFSDFTIHLNNRRILKGFFAWLGVSD SQNALRAVDKIEKIGPENVLKELEESGIDREKGKKILEFIEIKGTNDEIIQALKDLNIDE ETFNQGLDEMSELISCIKAYNIDEKNYRIDLKIARGLDYYTGTVYETTLDDYPKIGSVCS GGRYDNLASYYTEKTLPGVGISIGLSRLFYQLEQAKIISAEDKSLIDIIILPMDGFIHEG IKLLAKLREKNVKVTIYSEDAKLGKKFKYADQIKVPYAIVLGENEVKNGLYSLRNMATGE QEEVDFNKLVEKFSK >gi|281298259|gb|ADDO01000011.1| GENE 27 23070 - 24896 2007 608 aa, chain + ## HITS:1 COG:CAC1684 KEGG:ns NR:ns ## COG: CAC1684 COG1217 # Protein_GI_number: 15894961 # Func_class: T Signal transduction mechanisms # Function: Predicted membrane GTPase involved in stress response # Organism: Clostridium acetobutylicum # 4 604 6 604 605 702 61.0 0 MNYREDIRNIAIIAHVDHGKTTLVDALLKQSGIFRKNQVVNERVMDSNAIERERGITILS KNTAVHYNGVKINIIDTPGHADFGGEVERVLKMVNGVVLLVDAFEGPMPQTKFVLKKSFE LNLPVIVCINKIDRPEARPEEVVDEVLDLFIELGASEDVLDAPFVYASAKKGVAGKKLDE EMTSMEPLFQTILNYIPAPVEASNESFKLLISTIDYNDYVGRIGIGKIESGTLKENDSVY IVNSTKPGYEEKVKISKIYEFEGLERDEVESSSSGSIVAITGIEDINIGDTLTSEQDKKP LEFVKISEPTLSMNFSVNDSPFAGKVGKFVTSRQLRQRLFRELQTDVSLRVEETNSTDSF KVSGRGELHLSVLIENMRREGYEFQVSKPQVLFKTIDSKKYEPIERVTIDVSSEYVGAII EKLGRRKGELVTMQEPQGGYQRLEFLIPARGLIGYRTEFMTDTKGNGILNSVFEDYAPYK GDIPRRVNASIVSFDTGVASTYGLNNAQQRGSLFVGPGEEVYEGQVVGESPKGVEIEVSV TKEKKQTNVRASGSDEALKLSPVKNLTLEEALEFIEDDELIEITPEDFRIRKEILSSQQR YKSKNKKK >gi|281298259|gb|ADDO01000011.1| GENE 28 24901 - 26361 1342 486 aa, chain + ## HITS:1 COG:BS_ywnE KEGG:ns NR:ns ## COG: BS_ywnE COG1502 # Protein_GI_number: 16080712 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes # Organism: Bacillus subtilis # 17 486 9 482 482 412 43.0 1e-115 MLKIYFDAIKSFAQFYSIIFLINIIFSAAVVFFQRKKPTSTLLWVMAINFLPIVGIILYL LIGQDVSKSKMFDSKTQADRITKNKYRDTIENIQSREYKSSNAKTKEYKEIVKMFNNAEG EILYSENDVKIFNNGVEKFKALFEDIKNAKESLYIQYYIFKSDQLSSQFIDLLIEKAKEG LDVYLLVDGMGARHLKSSDRERIRNAGVNFAVFFPGIFPKINTHINYRNHRKIAIIDRKI GYVGGLNVGDEYVGNGKFGNWRDTHLRILGDAVNGLSWRFYLDYKFASKKDIKNFSTIYL KENGNKDVSIVTSGPDTKADSIRNGYEKLITRAEKEIYIQTPYFVPDEGLFKCLKVAALS GVEVNIMIPQKKDHPFVHWASLSYVGELLDWGVNVYMYQKGFLHTKIMISDDYLSSVGTA NFDIRSFELNFEVNAFMFDYELNQKLKEDFKNDLKDCKKITKEIYEERGLFTKIREQTSR LLSPLL >gi|281298259|gb|ADDO01000011.1| GENE 29 26361 - 26906 492 181 aa, chain + ## HITS:1 COG:Cj0620 KEGG:ns NR:ns ## COG: Cj0620 COG1451 # Protein_GI_number: 15791980 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase # Organism: Campylobacter jejuni # 48 178 87 213 215 77 35.0 1e-14 MKINIDRKNIKNVKIRVEDGVIKISAPKNLSTSHILDIYESNEAIVEKLIEDDKKKSTYK NHLFGEKLRENFSQKEIDDLYRKELSEILSHIFKKYEKLTGLAPKEYKLRKMKARWGTAY PNKRLIILNIYLAQRPIEEIEAVVLHELIHLKYPNHSKDFYKEIEKYMPNYRDLDKKLKH T >gi|281298259|gb|ADDO01000011.1| GENE 30 26969 - 27217 279 82 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282881891|ref|ZP_06290542.1| ## NR: gi|282881891|ref|ZP_06290542.1| conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] # 1 82 19 100 100 104 100.0 2e-21 MQIFNVTIFIGTKRIDPEYFADKIKSVPYHVIWNKTKEKAIEVKEVFKKDKKDDSESDKS DDKITTTDKSVNENKEKSTKNM >gi|281298259|gb|ADDO01000011.1| GENE 31 27288 - 27419 66 43 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|300813277|ref|ZP_07093634.1| ## NR: gi|300813277|ref|ZP_07093634.1| aminopeptidase I zinc metalloprotease (M18) [Peptoniphilus sp. oral taxon 836 str. F0141] aminopeptidase I zinc metalloprotease (M18) [Peptoniphilus sp. oral taxon 836 str. F0141] # 2 43 399 440 440 74 88.0 2e-12 MLSCSQKYETAGVKDAKYMVDAIEAFYKYHFKAKDNFTFEFRK >gi|281298259|gb|ADDO01000011.1| GENE 32 27841 - 28506 709 221 aa, chain + ## HITS:1 COG:CAC0673 KEGG:ns NR:ns ## COG: CAC0673 COG1760 # Protein_GI_number: 15893961 # Func_class: E Amino acid transport and metabolism # Function: L-serine deaminase # Organism: Clostridium acetobutylicum # 1 207 1 208 227 187 46.0 1e-47 MKEYRAFEILGPIMVGPSSSHTAGACKIARVAARICPENYKKVIFYLHGSFAMTYKGHGT DRALLGGILGFKTYDDRIRDAFKIADSKKINYEFVATDLGEDFHPNTVKISFVYEDHEEY VIGSSIGGGNMIIVDINGIQVEFDGTHPTLLFRYNEQKGIISEISSILYKNDYNIESINT IKDDLTEIVNLTIELDQNLSIDLVKKLTTNSKFLMAKYVEV >gi|281298259|gb|ADDO01000011.1| GENE 33 28507 - 29391 1057 294 aa, chain + ## HITS:1 COG:CAC0674 KEGG:ns NR:ns ## COG: CAC0674 COG1760 # Protein_GI_number: 15893962 # Func_class: E Amino acid transport and metabolism # Function: L-serine deaminase # Organism: Clostridium acetobutylicum # 3 288 4 289 290 236 47.0 5e-62 MFNTAKEIIEYCQKNNCHIYDLVLEDELKNSNLTKKEIFEKILEILQVMKKSSTNTLDKK FTTKYKMIDGFAEKCFSYQQISEPIVGKFLMKAMAMAFSTSETNANMGTIAAAPTAGSSG IMPATLMSLKEKYDLDDEVLVKGLLTSIGIGQIIGKYATFAGAEGGCQAECGSASAMAAS AAVEILGGSPSEALEAASITLINVLGLACDPIAGLVEYPCNFRNASGVMNALISADMAMA GIKSIVPFDEVASAMGEVGKLLNVSIRETGLGGLAGTKTGCAIRAQFLNLKEEV >gi|281298259|gb|ADDO01000011.1| GENE 34 29388 - 30623 1281 411 aa, chain + ## HITS:1 COG:FN2053 KEGG:ns NR:ns ## COG: FN2053 COG1301 # Protein_GI_number: 19705343 # Func_class: C Energy production and conversion # Function: Na+/H+-dicarboxylate symporters # Organism: Fusobacterium nucleatum # 1 395 1 393 395 370 52.0 1e-102 MKKKTLGLIPKIIIAIALGIVVGRFLPDWMTRVSVTFSTMFGAFLNFIIPLMILAFVSKG IADLSEGAGKLLLVTVILSYCSTLIAGSLSYVMSSNIFPSFITPDLVQKIQEASSKTLDP YFTIPLGPIIEVTNALVFAFMLGLCVSVLRNKGKGQGLYNIINEFSDIINMVLAKFVIPI LPFFIFGNFCGLSNSGSVFAILGIFGRIFVCIIALHLIYISALFFVSCIYAGKNPFSSIK KAVPAYLTAVGTQSSAATIPVNVNCNKTMGVTRQIREFVIPLCATVHMPGSMITLTACVF TLLTMFKMNASFAIIMRFICILGVAMVAAPGAPGGAVMSALPFLPYVGVESSGTMATILI SLYLTQDSFGTAANVSGDNAISIAVEKIYYKYIVKRPIPEEDDKEEVKIEE >gi|281298259|gb|ADDO01000011.1| GENE 35 30778 - 31326 645 182 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282881892|ref|ZP_06290543.1| ## NR: gi|282881892|ref|ZP_06290543.1| hypothetical protein HMPREF0628_1207 [Peptoniphilus lacrimalis 315-B] hypothetical protein HMPREF0628_1207 [Peptoniphilus lacrimalis 315-B] # 1 182 1 182 182 275 100.0 8e-73 MNKKLMYLGFSEEEKRILTELCKDFEIEARELKKEDYNEKIGYLLGIENFKHNEDINKND FSQIQFALFSDFDRDYMKKFLLELKERGLVISHKAVQTQKNIDWTLSYLLKHIEDERRLL IKFKNLGILVKKAQNLIEKDYSKKDLKILLDRAYTLQNQVIDEKKLDKIREDLSKYLQKF NR >gi|281298259|gb|ADDO01000011.1| GENE 36 31377 - 31826 519 149 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282881876|ref|ZP_06290527.1| ## NR: gi|282881876|ref|ZP_06290527.1| hypothetical protein HMPREF0628_1208 [Peptoniphilus lacrimalis 315-B] hypothetical protein HMPREF0628_1208 [Peptoniphilus lacrimalis 315-B] # 1 149 1 149 149 273 100.0 4e-72 MRKRQDQFSGLSKDRYKKFLKNDILSQKCNDGYCFADAEIKEFFLKDENKDLSFYINKEK FGQVLYKSNSKNEDIFDGNCPYIDLIGKWEYLNNEILRLPLEAWNKFDHSPSTWEVEIIF DNNYTVSSQGKENTPLAYDNLVELLNKLI >gi|281298259|gb|ADDO01000011.1| GENE 37 31827 - 32306 449 159 aa, chain - ## HITS:1 COG:SA0023 KEGG:ns NR:ns ## COG: SA0023 COG1576 # Protein_GI_number: 15925729 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 159 1 159 159 155 48.0 2e-38 MEINIISVGKIKEDFFKKAIDEYEKRLKAYCRVNFIELKDESEGKNLSDKDIDIILDKEG KRILEKIKERSFIIVLDIKGRSIDSVEFSKKINDIMLDGISSIDFIIGGSLGISQEVKDK ANYSLSFSKFTFPHKLMKVILMEQIYRAFTIINNKTYHK >gi|281298259|gb|ADDO01000011.1| GENE 38 32306 - 32806 874 166 aa, chain - ## HITS:1 COG:BS_ytgI KEGG:ns NR:ns ## COG: BS_ytgI COG2077 # Protein_GI_number: 16080001 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peroxiredoxin # Organism: Bacillus subtilis # 2 166 3 166 167 163 49.0 1e-40 MQVTFGGKKLNLYGEVVKVSDKAPDFKAVNNDLSSFDSKENQGKVVVYSVVPSIDTGVCS LQARTFNEEAEKLGDDVIVITVSCDLPFAQKRFCAQKGIKNSISISDYKDHDFGKKYGFL IEDLALLSRGVVIVDKNGKIAYTEYVKEVTNEVNFEAALDAVKALI >gi|281298259|gb|ADDO01000011.1| GENE 39 32917 - 34089 1003 390 aa, chain + ## HITS:1 COG:AGl1972_1 KEGG:ns NR:ns ## COG: AGl1972_1 COG3919 # Protein_GI_number: 15891101 # Func_class: R General function prediction only # Function: Predicted ATP-grasp enzyme # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 18 377 16 373 428 82 24.0 2e-15 MKYKNKAVVLGTNYYIGLGVVRALGMQGIYVVSVDHDKKSHYGVSKYVKEALIGPHYKKE EKKLVEFLIDYAKKEEYKPVLFPTADLYVEFMENNYDELKKYFLWPNDKKGLYKKIMDKR TLVEFTEKYGIKTPEILDIDDEDLLEKVDKDFGYPCLLKPRDSMNFVNTFRQKAFKVFNR GELEEKIKKVKEKNLRCFVQRIIKGPDSNCYSFDVYMKDKEAKAFMTTSKIRQWPINFGA STYAKQVYIEELYDLCMPLFKGEDFQGFAEVELKRDEKTGDIYLIEINVRFVNFVWLQHE MGMNTPLYYYLHSIGEDFQGPKIKENKEVYWKYQYEDFSAIKAYLKSGQMTLKDIIKDYR FKKVSSTWNIKDPMPGIKFFLWAIGHKIFR >gi|281298259|gb|ADDO01000011.1| GENE 40 34449 - 36320 1932 623 aa, chain - ## HITS:1 COG:BH1007 KEGG:ns NR:ns ## COG: BH1007 COG0326 # Protein_GI_number: 15613570 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone, HSP90 family # Organism: Bacillus halodurans # 1 623 1 624 625 591 52.0 1e-168 MENKQFKTESNRLMDLMINSIYTNKEIFLREIISNASDAMDKMYYIALTDDKINFNKDDY YIRISLDKENRTIRISDHGIGMDKKELEDNLGTIAKSGSLDFKNNNSKDKDENHQIIGQF GVGFYSAFMVAKKIEVLTKSYKSDKAYLWVSEEAKDYNISQSKKDDFGTIITLSLKDNTD DENYDEFLDEYKIKSLVKRYSNYIRYPIKMLVEKTKPSKDSTDENPKFETYKEDEVLNSM VPLWRKNKNELKEEDYDNFYNERRYGYDKPLSYLHLNLEGNVSFKAVLYIPSQRPFDFFN VDRKKGLELYSNGVMIMENCEELLPDYLSFVKGVCDSEDISLNISREMLQNTRELRLIRR SIEKKVFEELKRLFKDKREDYIKFFQNFGVILKSGAYANFGQDADKLKDFLIYKTTKRDY ISLEEYIKDMKPDQKYIYYATGESVDQIKELPQIKSIMDKDYEVLLFDDPIDEFVVKVLR TYGEKEFKSISQAEESSDKDKDESNEDSKLLSSMKDILKDEVVDVKENKNLTTDAAFLSS QGEISIDMEKTLAHMPGQEGFKAEKVLEINPKHVAFKKLKDFEKTDKDKFKLYTELLYNC ARLIAGLDIDDPVDFSRNIGKLL >gi|281298259|gb|ADDO01000011.1| GENE 41 36398 - 37303 718 301 aa, chain - ## HITS:1 COG:FN0623 KEGG:ns NR:ns ## COG: FN0623 COG0679 # Protein_GI_number: 19703958 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Fusobacterium nucleatum # 7 295 14 306 318 97 28.0 3e-20 MKLLYTILNLMTFIAIGFLLKKIKLFSKETAQELNSFVFKVAFPLNIITSFYKVNLAEVI NFSFFLYIAFTFFLSFCLALAISHLLHKDGLNRAVTTVAVYRGNFIIMGFPILESLLGDA SLIYAGIILAISQVFYNITTAWVYEKATLAKADYKKLFFNIFKNPMLLGVLIGILINLTN FNLYFLENPFRTIGKTATTFGLIVLGHGLSFDFDKNNLKNTIIVAFAKLLILPTIAFFAS NLFNLAPIEKSTAIILFSCPTAIVSYTFAKNYKADTKLAQNYVIFTTFLFMFTIYLVLKI F >gi|281298259|gb|ADDO01000011.1| GENE 42 37587 - 51578 21134 4663 aa, chain + ## HITS:1 COG:no KEGG:FMG_0048 NR:ns ## KEGG: FMG_0048 # Name: not_defined # Def: hypothetical protein # Organism: F.magna # Pathway: not_defined # 22 1591 5 1583 2427 1670 60.0 0 MGIDFYQNIIFNKERGLIIEKMKTRLKRVFLFMLSALMLFTSLPLSVFAEVNYKYDDLTD NKSEIVNKLTPVKPAKPEAGKTAEDLIKNPDQPAIYTLRTDYKVQRGEKYQVDYQPYIAS VGEGASDAEKAKVNKTMPMPAIAGYEKPQENLTIDYKTVKAADGKNKKGDATNGLRYSAN EVFNYDALSNKIQIKHVFQKLDDFTKYTNPDGSVGEEGALITTQNGNTGSTVQASPLSET DPRRKGFVPEADYINMQVPENAKDFILEYRYNRAHYDVVYDTQGGSPLPTRTLYYEQVIP KIADESIPTKVGGVFQGWKPSVELTTKNGKTYKANEIIKDGNGKAIEKLDNNLIMPASKV TFTAVWTDKEKADYAVQFWAERADHADNASLSDKYDYIGTRVYKDQATGSRPDLDTVPVD KIVFPDLDQARLQKIWNGTKFNQDKYLYLNKFYVYNQDLTHDQNKDPKKVNRVKKVEATG ETVYNIYYDRQVYDLYFTKSNVSGSAFYPEITKDGKEVGKAGNPYHFKARFNQNLVGLWP DDVKEVKGFTEGKYSLGWLPNLKTPKHYYRDTPPYRLSANLFIDCPDLEKQGGYVSEIDL GNGQTKPASITDLSFGIDQGPGTIPHHIDFWLDDFDDNQVIDYDLYTIKSDTDNSEYKDF LPPDLQGFTPKTTGGRGSEFKDKYDLEDFNDDREEITPFPKVYSKELDEDGEPKQKGKLY FMKNFPGDEDREFDQNGYLKFEYSRNKYPLRFNYDPSIIRDDSYFNDKNQLETFYEFPLK ALSPEADTEKSYKTGNLKNILDNPEKLQALGLTDLVFTDTDGKLKVKRPDNLSNQMVFKG WALDPAGTTLVSDKKSEKMPSHAVNLYAKWGEPDYQWKVTFDPNGGSLRNIKEEDLTKER KTVQVGDIGQEEIKTFAKKEANDGDKQVFTVIQRQKLVAPKFIPKRKGYDFMGWEVIRYK KDSTTGDYTTEQDTSYRETYKVPELYSFGNDVVSPIYLKAIWVPNDRVDVDVIHHFLSLD LSKETKTIPETLHNKRTGYLVATSADKQNEEYILATNDELKEKLPADLKTLYNKYNDRVK ANNTFFQTFKVEPEKIDDGNGKLIPNPKFKDNVFHFFYRPFRTRDYKVNYIDERGKGEVE KFFKGLNLTDTSSLKDDALLKANESNKKKFEDNREAFEKLIKEYQIVDPEAVSNGNRHYD ARNYRQIPGWVIAKNEKPQQQLFFDVNEETNEFLGINGTGADQVFFYYKDVRVIEVPNKD DPVPDGYVRVTFKADKGGAFTDKDGNSKTELYYDVIKGLKSDLLPEPKELEEGKTKEEGK YYITPETGKKFIKWDEKPLLNKNTIVDNDTKDFYVFTAKFEWSGLSASGLVRTEAFKDPN GKWTNDFAPTIEDLKKQLVWMEKGKVEKLPAGAVIKLYDEAGTELTKDEQVYNLVNEKGK ADKDELVRTVNVKAKVTFKDGKEPQELTIPITVYKNVYEALNKAGDKPLFLKEAEAKEAK DGGLKDILKDNDGNRYIKVTIKPNKDFTNKDDKVYYVNPNAWVEIPNDSNGTTSLINWTA DKVGQNDNGEANGKFDFGKRHKFTEDTVISPRLSQTSELVAHESYKDSKNKWVNDFIDKE LTDANLKKAIQVKNDEAKALGVGDVTIVDDEGEPYANAEALKTALYGKLQEKDDDGKASR IENIKVKVTFANGEVQTLTVPVKVIKNIYQAKTKTGKPDYVPANYVKVTLDPTTKAKDPQ KYFYYVNPDAKVLIPGNDPEGVKEDFTGWTMKADGATGAGTSYKLNDRHQFAKDSTIIAQ YGQGKVRIKYVDENKKEIDPKYQIVGVDYPTEKIGKIGDNIPDPVDSQNAEKAAAPKFKG YIISSVSLDNKSATYTDPATATITYKYSKKVTTEDKSQNDTQYFPVIFDANSGEFGTDPK NQKIVYVAFDGNSSTLEKVTFEEVRQAIEEKYGKPSKADETFVEWQDKATDGNKVADDYE IKFKGLDQQTHKPLGETFYANYDKASALVKYLDLNGKTISDEFKFLTDAEAQGLDEDGKK AALDKKYPTEKAGTADEAIDKNVYTKDTAPKLTGYKFNRIELNPKDGKYALSNKATIKIY YEKDLDVIAEKDESGNPNKKPEGYVQVKFVPTDKAKDATEKIFYVHPKKDVTIPIADPVA KATFTFKEWKMGAKADGAVYNPKTPKKFTDALTTITATYDSSEDIIPYDPSATDPMARPD GYVRVSFAADDGLSLTDQKAYYVKKNAGITLGNAKLVKPGHKEETGYKFDKWDKEDTLEI KEDDVLVTAKAKVLHDFDIVNHPGYVKVTFKAGANGVIKENGNTINEKVYYVNPNKYVNL KAPTPEGNTGYDFSTWKSDKSQSDFSLANFVNYKEDTVITAMFNQKEAVYPKLDGSTKPA GYVEVTFAISGTGGRIGNDEITTYFVDPNRQVSLKVPKTIAGVGFEFDKWRMGTNPADQV INPADQRQYSKDTTIYGSFKKLEDIIPATNQDGTHNLQPIDYVAVLFIGGDHANKLDGQI LYYVNPKANPAKTIGSLTKPTVTPDTGWKYTGWDVQDSTVIKDYTFVVAQYEALDDVVPA LKDDGTPNKKPDGYVKVTFKAGANGTLQGGEKTYFVNPTKYVKLTPPTTVPNTSFEFSTW ESDDKDLILANNINYTKDTIITAKFNTKGDVIAKTEPNDSQKPAGFVTVNFVIDPATGGK IKTGETITYFVRPNTDVTIQPPKTTANTGYEFDKWSIDTTEARSYSDPVTTVKGEFSKLN DIIPYKNPDGTVNAKPEGYVIVNFLKGDHGVLDGQTTFYVNPKAKKTIKDINPTITVVPS PTYKHDGWDTDFATVIDKDTKVTAKYTQLPNIIKAGPKDTAPDGYVVIIFETDGRGTITG NKAYEDKTNPKANENEIVYFVNPKKGIKLAKLADGVKPAHDQLAIPSTTPNDSTKYIFDQ WRTDIDTTTPITRGRVHIAMFKPKEVKLTYDKNGATGDVPAELTVDYDTDVRLAGKGNLA KKDASFKGWKIGEKTYQAGDQINLKEDTTAYAQWGDDKKIIEYNPDDNPTTRPDDTYVRV TFAVEDGLKLKEQKAYYVKKDAGIKLGDTNLVKPGYTVETGYKFDKWDKEDTLEITTDVL VTAKATKLGTVIPEKKDDGNKNDKPTGYKEVVFKVKDADATKGSLEGNTKFYVNPSEYVT INPPTAKANTGFEFGGWDKDATRLTVYDKDTTIIGSFNGFEGVIPKTKPDGTENKKPDGY KTVTFVINPATGGQIVKDEVTVYYVNPAKDVTLPQPKTLAETGYEFEKWDQDTAKAKKYT DDTTVKGNFKKLEDIVSGDNPKPEGYITVTFDKGDHGKLTGKTVYYVNPKAGKTIANLTK PTVSTETGWKQKAGADAWDTSDTTPITGPADIVVKAQYDAIDDVIEKKSGVTKPDGYITV TFSTETNGKIKGTNDTTKLVYVNPNKAHVLKGYAPKVTPNTGFDFADWDTQIVKSIQYKD KYVIKALYNAKNDVIPQKEANGSDQPAGYVKVMFAKGEHGNLSGQTVYYVNPNKEVTVPA PTVTASVGYEFNNWDKTLKQKFTADTKITAQYTERDNIIPQEKTDGSDRPSGYKTVTFKA DAKGSLAGKTVYYVNPEKIVDLTGTADAITKNPNTGYTAEGGTWDKTLKAKFNDGDVITF NFKALADVIEEKPGVTKPDGYVTVKFIPTDKAKDPTEKVYFVNPLKEVTITEEPVGTKVK DANDVSYDYTFTGWTVTRGAINSWTGTSVSDKFIQDTDITAKYGMKIGNIMPLPLAKDNA VTAIKDKPEAKDLIKNPGDLPKGTTFAYADNGEPKVNKAGNVTAKVEVKYPNGKTSIVEV PVTVVDNVVSQIGGEDGQKPLVPEAYVKVTVDTTDKATPNTKYVKVFWVKPNVKVTIPGI LAPTGKEVVEDGVTKTNNFIKWVSDDDNKDYKDGITDTFTKDTKITATYEFNKNIEPKEK DPLWFPLNSNPEPKDFIENIYDDNDPNNKDNLPLGTKLEFVQDKEPNTGDVGQHSTTIKV TYPNGAVKEKVVPYKVTGDVVEQEPGNGKPNVPDNFVQVKVKTTDKATEDVTRTFWVNPK IEVTISVSNPKGKYVPKDQNNPSDFTWKFNGWETEDKTKSWNDTIKDRFTAETTTIVAKY IEGQAELVDIYYTTESWKGVNNYLPREEQLKDLVTSKVPGEVESVELLTDSQDFAEYAYS KLSENNIDQINRPETINAKVTLKDGTVSIVEIPIVVYKNIYEGLTNGGKPDYVAQAERDL GISNPGRDDNVYVRVTLIPTAKAKNQQRKTYYVRKNASVRIPEISAEGRDAYKFIYWKAE KPGKGQDNPNYGWATRSMSMFRSAEPINKDDLVNNGEIIDKVDGNTRMSFDRDTDIVAQY KTPTPTPDEPDKPNPDYPNYPEYRPNYSGGSTMYIEKPVEKVIKVPDNAFVKEVRYMQGF KGKFRPFDGLTRAEAAQILANALKEDGYKYDPNYKISYKDIGNAWYTEAVKIVTQANVFK GYDDGNFKPQEKITRAEWIGTLKRFQELRDLSGNHMNLREGHWAMAEIEAAYQAGWLAIY SDGLADFKADEFIPRQEVAAVSNKAFERVLDKTYIKRNDKALVNYKDINDKMWSYEDILC ASNTFLHDKKLYRAHGIDMSNEIFNINLDGFTITKDKFQRIER >gi|281298259|gb|ADDO01000011.1| GENE 43 51885 - 53018 1274 377 aa, chain + ## HITS:1 COG:no KEGG:Amet_4303 NR:ns ## KEGG: Amet_4303 # Name: not_defined # Def: pyruvate ferredoxin/flavodoxin oxidoreductase # Organism: A.metalliredigens # Pathway: Citrate cycle (TCA cycle) [PATH:amt00020]; Metabolic pathways [PATH:amt01100]; Microbial metabolism in diverse environments [PATH:amt01120] # 1 177 1 179 182 120 34.0 1e-25 MKKRKIIATGLAGTGVMAMGELLAHGSMDEDKNIIWLPNYGKKSPNMVKFCLIFSQSEGE NCLETDLSDLIIISGDVSEKLVAKLEKGGNLFINETIIDYIPKRDDINIYKIPATELARK LGYQKTSHMIMLGAFLEVTEALNFGTVVKAFTKVFGYDLKTLLPIYQKAVVTGAGAVRSS SAKEKHIERQSNAEVKTNKYNNEKFEFEELSEDFKDSIDSETFKDDLSIAEHALENEIIM VRFYNKSKEILRGNITSEVFGSLAKQSDEHLLYLKGLIKKLKGQSIYIDEVDKTPIEEEK INWKEFSDEKRIIALSIFEEAIKLKNNSIEFYKKASEKAKKDFAKRLYDELKYWENYQLQ QLEGQYQILKEENEESI >gi|281298259|gb|ADDO01000011.1| GENE 44 53118 - 54125 1004 335 aa, chain - ## HITS:1 COG:SPy2090 KEGG:ns NR:ns ## COG: SPy2090 COG0010 # Protein_GI_number: 15675847 # Func_class: E Amino acid transport and metabolism # Function: Arginase/agmatinase/formimionoglutamate hydrolase, arginase family # Organism: Streptococcus pyogenes M1 GAS # 1 332 1 327 328 256 40.0 5e-68 MIKYYTPQDMTLWSGRIDDENDFSAFRWHQWVQRMDLNDESLKPFDGKMVFGILGFESDQ GIELNKGRYGASAGPFAIRKELSKLPCQFNQNTKIFDCGNVTSKYTSLVEAQNALAEAVK KILSLNLFPILLGGGHEIAFGHYKGLSNYLMDRKKKNLGIVSFDAHFDLRPYDKEKGGTS GTMFRQIADLCQERGDKYNYFVMGIQKHSNTQSLFDTADNLGAHYILAKDIINSDIHKIE QKLEDYIKDLDEIYITICSDVLSTAYAPGVSAPQPLGLDPEKILILLKKVLQSGKVLSFD IAEVSPRFDHDSITANMASILIYAVVTSLANHIFD >gi|281298259|gb|ADDO01000011.1| GENE 45 54147 - 54326 131 59 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282881855|ref|ZP_06290506.1| ## NR: gi|282881855|ref|ZP_06290506.1| oligopeptide ABC transporter, oligopeptide-binding protein [Peptoniphilus lacrimalis 315-B] oligopeptide ABC transporter, oligopeptide-binding protein [Peptoniphilus lacrimalis 315-B] # 1 59 1 59 59 72 100.0 8e-12 MILFIISKFPNKIYKKLKEFFTIMYNESKNPLTKDKIIKMFCKFLFNSKIKNNVKTRMN >gi|281298259|gb|ADDO01000011.1| GENE 46 54516 - 55874 1119 452 aa, chain + ## HITS:1 COG:MA1121 KEGG:ns NR:ns ## COG: MA1121 COG0534 # Protein_GI_number: 20089987 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Methanosarcina acetivorans str.C2A # 5 445 11 449 475 214 32.0 4e-55 MEKIKENKLGIDPIGKLLFTVSFPIIISMLIQALYNMVDSYYIGKISEEAFTAVSIAFPL QNIMVGIAVGTGVGTNSLLSRSLGEKNFDKANLSAENGIFLSILYGIILLILSFVLPKYY YISQNVSQEIVNYGVEYLSTIMAFSMGVFIQINCERLLQSTGRSMLTMFTQGIGALINII FDPIFIFGYFGFPAMGVKGAAIATVVGQIIGAIFGIYFNFKLNKDIQIKKIRPRLQIIKK IYEVGLPSIVMISVTSTTIYFLNKILSIYSTSAIAALGAYYKIQSFIFLPIFGLTNGMVP IIAYNYGAEKKKRIIKTIKLTMIVGTIMMILGTAILWIFPEELLDIFSASDAMKEVGITM LRIIALCFIFAGISIMGGSVFQALGNGLLTLIDAVIRNIIIILPYTYIVSRIAPIEYVWW SYLLSETSSIIFVSYFMKNFAMKRIDLIKESI >gi|281298259|gb|ADDO01000011.1| GENE 47 56078 - 56443 504 122 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 [marine gamma proteobacterium HTCC2080] # 1 122 1 121 407 198 79 5e-50 MAKAKFERNKPHVNVGTIGHVDHGKTTLTAAITLVLNKRYGSGEFIDYAHIDKAPEERER GITISTSHVEYETPNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREH IL Prediction of potential genes in microbial genomes Time: Mon Jul 18 12:00:30 2011 Seq name: gi|281298257|gb|ADDO01000012.1| Peptoniphilus lacrimalis 315-B contig00027, whole genome shotgun sequence Length of sequence - 259 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 257 132 ## gi|300814268|ref|ZP_07094540.1| putative lipoprotein Predicted protein(s) >gi|281298257|gb|ADDO01000012.1| GENE 1 2 - 257 132 85 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|300814268|ref|ZP_07094540.1| ## NR: gi|300814268|ref|ZP_07094540.1| putative lipoprotein [Peptoniphilus sp. oral taxon 836 str. F0141] putative lipoprotein [Peptoniphilus sp. oral taxon 836 str. F0141] # 1 85 167 251 495 119 95.0 9e-26 NCGCSCKHHSMEEYNSCPCCKGKKAQTHKEEDKKDCPSCCHKSMGESDVCPYCQAKEAKA YKNSNSCKKANKESSKEINLKNGEY Prediction of potential genes in microbial genomes Time: Mon Jul 18 12:00:38 2011 Seq name: gi|281298249|gb|ADDO01000013.1| Peptoniphilus lacrimalis 315-B contig00057, whole genome shotgun sequence Length of sequence - 8736 bp Number of predicted genes - 9, with homology - 8 Number of transcription units - 5, operones - 2 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 13 - 72 7.9 1 1 Op 1 . + CDS 122 - 331 172 ## CLJU_c03300 hypothetical protein 2 1 Op 2 . + CDS 365 - 1375 421 ## PROTEIN SUPPORTED gi|167855185|ref|ZP_02477956.1| 50S ribosomal protein L31 3 1 Op 3 . + CDS 1390 - 1482 77 ## 4 1 Op 4 . + CDS 1445 - 2359 585 ## BCE_0423 hypothetical protein + Term 2488 - 2528 -0.9 + Prom 2756 - 2815 3.6 5 2 Tu 1 . + CDS 2997 - 3533 416 ## COG1611 Predicted Rossmann fold nucleotide-binding protein + Prom 3677 - 3736 6.4 6 3 Tu 1 . + CDS 3768 - 4028 398 ## gi|282881900|ref|ZP_06290549.1| conserved hypothetical protein + Term 4180 - 4222 -1.0 + Prom 4141 - 4200 11.3 7 4 Op 1 . + CDS 4427 - 6397 1753 ## Cbei_2021 hypothetical protein + Prom 6409 - 6468 3.6 8 4 Op 2 . + CDS 6501 - 7337 798 ## HMPREF0868_0084 hypothetical protein + Prom 7403 - 7462 5.1 9 5 Tu 1 . + CDS 7489 - 8502 972 ## Swol_2194 hypothetical protein + Term 8511 - 8540 -0.2 Predicted protein(s) >gi|281298249|gb|ADDO01000013.1| GENE 1 122 - 331 172 69 aa, chain + ## HITS:1 COG:no KEGG:CLJU_c03300 NR:ns ## KEGG: CLJU_c03300 # Name: not_defined # Def: hypothetical protein # Organism: C.ljungdahlii # Pathway: not_defined # 1 69 1 69 74 85 66.0 8e-16 MIKNNIEVDVKVKCIENGTTQARIAETIGTTGQYVNRIIKRQDSVVNKTFVQMLEVLGYD IELTYVKRD >gi|281298249|gb|ADDO01000013.1| GENE 2 365 - 1375 421 336 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167855185|ref|ZP_02477956.1| 50S ribosomal protein L31 [Haemophilus parasuis 29755] # 13 323 11 328 339 166 29 4e-41 MSDLIPYGEQFKKIVDIIESAKERAYRKVNEELILMYRDIGEYISVQSENAEYGDAFVQK LADFFATNYPELKGFNRRGLYRMKQFYELYKDNEKVSTLLTQLNWSNHLKIMSACKTMEE RIFYMSMCVKEKYGARELARQIDSGYYERYMLSQKPLTPAIEESKRVTGNVFLDNYVLDF LDVPETVSERDLQKSIIRNLKDFILEIGKDFTFIGEEYRVQVGKHDYYIDLLFYHRGLSC LVAFELKIGEFKPEYVGKISLYLEALDREVKKDNENPSVGVILCASKDDEVVEFALSRSL SPTMVSEYNLKLIDKKLLQKKLKEYIELAGTVSDEE >gi|281298249|gb|ADDO01000013.1| GENE 3 1390 - 1482 77 30 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNFDLAEPEKAVFINGGKYGQQRNYPVQNS >gi|281298249|gb|ADDO01000013.1| GENE 4 1445 - 2359 585 304 aa, chain + ## HITS:1 COG:no KEGG:BCE_0423 NR:ns ## KEGG: BCE_0423 # Name: not_defined # Def: hypothetical protein # Organism: B.cereus_ATCC10987 # Pathway: not_defined # 1 304 1 304 304 426 72.0 1e-118 MDNKEIILSKIAEILSRKGFFFRSNSEFKSRLKCVGLGEYFDKYSDYLIPYYYNNGYAHK FENSNEEYDVFLGLDSIFADLYRENKNGEIISLLKELTKSFNAPYILEILRDDFEELANL YELLGLSIRIEVDRVIVTTCMASNEQRVVELFSVESWLKQNHQEVYDSYESAIDAYTQGH AGTCIESCRTCLVSIFSKYKGTENFAKWMRGIYNTSGESKISTAQDLSQALNTELRKEDL ADFFYENRAGKLTKTKAIYMIYSMMSDYGTHRNEATQENPTLEDALFSLHLMDSILFWVY SKKK >gi|281298249|gb|ADDO01000013.1| GENE 5 2997 - 3533 416 178 aa, chain + ## HITS:1 COG:FN0535 KEGG:ns NR:ns ## COG: FN0535 COG1611 # Protein_GI_number: 19703870 # Func_class: R General function prediction only # Function: Predicted Rossmann fold nucleotide-binding protein # Organism: Fusobacterium nucleatum # 2 171 5 174 192 157 46.0 8e-39 MNITVYLGSNEGSDPCLRKAVEELGAWIGNSGNALVCGGSKSGLMGAIADSVLKAGGEVT GVEPKFFIENELEHDGLTKLIVTKDMAERKNKMIELGEVFIAFPGGTGTLEEITEVISKV SLKQLDAPCIIYNLNGYYNDLKALLNHMIEKGLSSNERQEGIYFAENLNNIKQILESV >gi|281298249|gb|ADDO01000013.1| GENE 6 3768 - 4028 398 86 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282881900|ref|ZP_06290549.1| ## NR: gi|282881900|ref|ZP_06290549.1| conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] # 1 86 1 86 86 135 100.0 1e-30 MAILRIILPVFLICVLAIYLVYNAKKKTGYKSNEDKQKSENNMSEGMAIGMCLGTAVGIA LGKENLAVGMSIGMLLGMIIGMNSKK >gi|281298249|gb|ADDO01000013.1| GENE 7 4427 - 6397 1753 656 aa, chain + ## HITS:1 COG:no KEGG:Cbei_2021 NR:ns ## KEGG: Cbei_2021 # Name: not_defined # Def: hypothetical protein # Organism: C.beijerinckii # Pathway: not_defined # 6 655 4 651 656 707 53.0 0 MFRLNSYYEDNINKFLNRDIDNILGIISSNNSSAETKIQQKNTWIQEINILKRELKGLDG RVIFEYTIPRMGKRVDNIILHKNIIFVLEFKCGSEKYYRMDYDQVYDYALDLKNFHKESF DKFVVPILIATDAPSKDNKFIVKENVMEPLECNSYGIRKLILQVSNRYNMPNFSYDTWIN SEYLPTPTIVEAAQALYTGHNVEDITRNEAGAKNISITTDSINNIIEYSKTKNKKSICFI TGVPGAGKTLVGLNLGIQKTDAKKGEHAVFLSGNFPLVEVLQEALVRDRIESMKNLGLNI KKSDEIRKTNAFIQIIHKYRDSFINNENVPPEHIVIFDEAQRSWNHEKIAKFMKTKKGIP NFNYSEPEFLISTMDRHKDWAVIVCLIGGGQEINDGEGGLPEWFNALRSKFRKWDVYVSD NLKEEYLINNEWKDMIGGLNVKEIEDLHLSISLRSFRTPDLADFIKATLDLDINTAKQIY EKIKYKYPIKITRDIKLAKEWVKNKSMGSQKYGLLAASGALRLKPEGIFVKNKIDVCNWF LNNKEDVRSCYALEDVVTEFDVQGLEVDYSIVCWDADFRIIDGKWSYKRFHGSNWINILK NEDKLYLKNTYRVLLTRARQGMIIFIPKGCCEDITRQPKFYDGTYNYLKQIGLEEI >gi|281298249|gb|ADDO01000013.1| GENE 8 6501 - 7337 798 278 aa, chain + ## HITS:1 COG:no KEGG:HMPREF0868_0084 NR:ns ## KEGG: HMPREF0868_0084 # Name: not_defined # Def: hypothetical protein # Organism: Clostridiales_BVAB3 # Pathway: not_defined # 56 278 1 224 241 303 70.0 5e-81 MKNSKNFNLFLMDGEVTGRIKCTLSNWTGIAYKIPRTYLDKCKDRLDLKQSGVYFLFGKN DDGDDEVYIGQAGIRKNGEGVLFRVAEHLKDEIYFSDAVMLTTQNNSFGPTEISYLENKF TNMAIDIDRYKVRNGNDPNPGNVTEEKESELEDFIEYSKMVLGVLGYKIFVPIVKNEFKI EDKNDDDEVLYLNAITKKSGENIIAKCKRTSEGFVVLKGSMIESIDSKSLTKSIKELRDK CKANNEIIDGKLTKNYLFNSPSYAAMFVLGMSRNGKID >gi|281298249|gb|ADDO01000013.1| GENE 9 7489 - 8502 972 337 aa, chain + ## HITS:1 COG:no KEGG:Swol_2194 NR:ns ## KEGG: Swol_2194 # Name: not_defined # Def: hypothetical protein # Organism: S.wolfei # Pathway: not_defined # 234 336 11 107 108 97 49.0 5e-19 MRIHYFQRYHQKENVATANTMLLLSRLYSYSPNKFFRFLKSEFFMDSFEPEIVFNLQEKS VDSIPDATITQEGFKIVVETKMTDWFYSSQLMNHLKSFKDEKKKLLITLSSELMEKTKLD DFNEQLKDYNKTQKYPVMHINTTFELMVNAIEDVIDDRDYEIKDILDDYRDYCYKDGLIP TSDSWKYLRMQLASTTFDFNKENNVYYHDADRGYSPYAYLGLYKQKSLRLIGKVCAIIAA IKKDGEIQYEAVLGDVTNERKDTIVKAMEDALSYGYDLKNYKHKYFFVDKFYETDFRKVS KGGAMGAKIFDLTEILKSDSLPEVDQIAEILKDKTWE Prediction of potential genes in microbial genomes Time: Mon Jul 18 12:01:14 2011 Seq name: gi|281298247|gb|ADDO01000014.1| Peptoniphilus lacrimalis 315-B contig00020, whole genome shotgun sequence Length of sequence - 1254 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 10 - 52 -0.2 1 1 Tu 1 . - CDS 67 - 1152 439 ## PROTEIN SUPPORTED gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase - Prom 1193 - 1252 2.8 Predicted protein(s) >gi|281298247|gb|ADDO01000014.1| GENE 1 67 - 1152 439 361 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae SP6-BS73] # 13 345 8 312 317 173 35 5e-44 MTYLNNNTKINIKGSHLSEKEMILIEAYKGEGYSNRQIAKKLGRCHQTINNAVKKASVIQ KRQVSQNSKVYAYEDVKYFADLNRRIYLENRKNCGRKPKFLTCEKFLKWADKKILEENWS VDVCVGYAKRSKLFNDNEIPSVKSMYNWIDKGLMKTKNIDLELKLKRKPNKNNKNNRKNK MMLGESIETRPKEIETREEFGDWEIDTVIGSKKKTDPVIITLTERKTRYELIIKIDSKTS KAVEEGLSFLKDKSPLKEQVFKTITSDNGLEFSSLTKICEYIKIYYCHPYSSYERGTSEN QHKLIRRFIKKGEEIGKYTKRQIERIMNWMNNYPRKILGYMTAEEAFMKELKLIEKTSLA I Prediction of potential genes in microbial genomes Time: Mon Jul 18 12:01:15 2011 Seq name: gi|281298245|gb|ADDO01000015.1| Peptoniphilus lacrimalis 315-B contig00031, whole genome shotgun sequence Length of sequence - 3383 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 3111 4211 ## gi|282881909|ref|ZP_06290556.1| hypothetical protein HMPREF0628_0844 - Prom 3263 - 3322 6.5 Predicted protein(s) >gi|281298245|gb|ADDO01000015.1| GENE 1 3 - 3111 4211 1036 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282881909|ref|ZP_06290556.1| ## NR: gi|282881909|ref|ZP_06290556.1| hypothetical protein HMPREF0628_0844 [Peptoniphilus lacrimalis 315-B] hypothetical protein HMPREF0628_0844 [Peptoniphilus lacrimalis 315-B] # 1 1036 1 1036 1037 1909 100.0 0 MSNITNFRTRKNQITKSLKKLMLYLLVISLVLPSLTEVAWAAANPPEVMLRDNQVRAGEA PWKPDNYENGSDAAVMSRTGYCGSVGGARFRGSVKGIHYTEYKNAEDGFGWSRKPGGNDN YADELIRVNAKFDKNTKTIFWNIIVKGQSAGDLMGVTKDLTNPYFIIAISRGLENPKNLY VSNGYRKLKEYPNNWQTLHTGDFRMYDVYKDSDHALYNGRRILGKTDQTKEFLQEKYRLP CTGDNQDKSMAYNIEKYNYYSKYAIIDQQGGLNEANTRMYSFTTELDEGEVAAQGELPNV DSEFTNYMGWGGQRNNVDLSGKVWITVGVTSREARKNTAKPLGTGNYNFSKIAVVDVVPN KDNLGLEPYYNEGSGKAEETVKLPVNLKNSKKFPEGTRFMLESDPKDKFETDHSTGAITQ TPAKPNGPISIDQYTGEVTVKIPKGAKGGQEIKDNVHVIYPDGSTHIVPLVVKVIEDKPN IKRGSFATKPKDNEKQLDKVPFEDIYMGDAASKFTYQAGDTSKIIKSFTADGLPSGTTFG VGTQESSNNAPDENGKRFQRSLALKADTKAKVGDFAITFKAVNGSGKETTATNPGVIKTY LPTNNGTKIRIKKGTPEANIPSPEAAIGIYHKKYTNRDDIRNELKTGINKNLIKKDKTGY LPDGTTYTWKNTPKTDVVENNHLYSAYVKYTNKDGKEVVDEVPVYVDVYDTDDVIAYTPN DVTKPTDDKDKNVPKKDSNKDDVDVKDYNLVAFRTEDKTKGTLTKDKEQNKEVISVLVKK NNSKLKTFGSIKPTVNTATDYTFWFWDKDPADVKQVVADKDTYANKDIYTAYFIKSGDEI KEIDKNIPLPNGFHKVTIAKGDGIEDNQLFGKTYAVKEGVKLSKDKFPNINAKQSYKDPK WNVGNPWDQVMGKADVTYTASATKIEYTTDQVIPWIPKDPKNPENDKPTTGKDGKEIPAN YITVKFTAQKEAGKALGKVTVGAKTGEEVLAKVKPNTDLSTKTDITATGNNGYGFTKWKP ALGVVTDTNKAFEAQF Prediction of potential genes in microbial genomes Time: Mon Jul 18 12:01:53 2011 Seq name: gi|281298243|gb|ADDO01000016.1| Peptoniphilus lacrimalis 315-B contig00035, whole genome shotgun sequence Length of sequence - 473 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 472 154 ## COG3464 Transposase and inactivated derivatives Predicted protein(s) >gi|281298243|gb|ADDO01000016.1| GENE 1 1 - 472 154 157 aa, chain + ## HITS:1 COG:SP0836 KEGG:ns NR:ns ## COG: SP0836 COG3464 # Protein_GI_number: 15900723 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Streptococcus pneumoniae TIGR4 # 5 156 163 313 418 109 40.0 3e-24 RNTHRAHVSFICTDSITSEIIDILPDRRLFKLYTYFLRFPRRVRDQVKIVVCDIYSPYME LVKKVFKNACIVLDKFHIVQNFTRAFNMARVQLMKKFKTDSHEYRCLKRYWKLLLLPKAK LISTHFKSYPCFKGFISQKEIVEHILDFDYSFRMIYD Prediction of potential genes in microbial genomes Time: Mon Jul 18 12:02:09 2011 Seq name: gi|281298187|gb|ADDO01000017.1| Peptoniphilus lacrimalis 315-B contig00011, whole genome shotgun sequence Length of sequence - 67405 bp Number of predicted genes - 64, with homology - 58 Number of transcription units - 27, operones - 17 average op.length - 3.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 33 - 78 3.1 1 1 Tu 1 . - CDS 92 - 6673 7674 ## COG4249 Uncharacterized protein containing caspase domain - Prom 6831 - 6890 7.7 2 2 Op 1 23/0.000 + CDS 6942 - 7424 446 ## COG2963 Transposase and inactivated derivatives + Prom 7515 - 7574 4.2 3 2 Op 2 . + CDS 7594 - 8391 568 ## COG2801 Transposase and inactivated derivatives - Term 8417 - 8460 9.1 4 3 Op 1 . - CDS 8511 - 9047 560 ## COG0212 5-formyltetrahydrofolate cyclo-ligase 5 3 Op 2 . - CDS 9040 - 9861 899 ## COG0190 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase 6 3 Op 3 . - CDS 9866 - 12442 1874 ## gi|282881952|ref|ZP_06290597.1| hypothetical protein HMPREF0628_0117 7 3 Op 4 . - CDS 12439 - 13389 817 ## COG0564 Pseudouridylate synthases, 23S RNA-specific - Prom 13572 - 13631 8.8 + Prom 13273 - 13332 10.6 8 4 Op 1 . + CDS 13458 - 14135 656 ## gi|282881943|ref|ZP_06290588.1| hypothetical protein HMPREF0628_0119 + Prom 14146 - 14205 7.1 9 4 Op 2 . + CDS 14275 - 15174 668 ## COG1295 Predicted membrane protein 10 5 Op 1 . - CDS 15181 - 15780 631 ## COG1040 Predicted amidophosphoribosyltransferases 11 5 Op 2 . - CDS 15764 - 17947 1967 ## COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member - Prom 17978 - 18037 6.5 - Term 17982 - 18019 2.2 12 5 Op 3 . - CDS 18044 - 18826 753 ## gi|282881953|ref|ZP_06290598.1| putative lipoprotein - Prom 18849 - 18908 11.2 - Term 18941 - 18990 3.6 13 6 Tu 1 . - CDS 19024 - 19932 1358 ## COG0253 Diaminopimelate epimerase - Prom 20011 - 20070 9.8 - Term 20095 - 20142 5.1 14 7 Tu 1 . - CDS 20193 - 21503 1611 ## COG2252 Permeases - Prom 21541 - 21600 13.8 - Term 21584 - 21629 2.2 15 8 Op 1 . - CDS 21648 - 24227 1793 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 16 8 Op 2 . - CDS 24238 - 25170 1328 ## COG2214 DnaJ-class molecular chaperone - Prom 25212 - 25271 9.2 - Term 25261 - 25293 3.3 17 9 Op 1 . - CDS 25307 - 27169 1727 ## FN1582 hypothetical protein 18 9 Op 2 . - CDS 27174 - 27515 317 ## FN1583 hypothetical protein 19 9 Op 3 1/0.000 - CDS 27518 - 28306 846 ## COG2367 Beta-lactamase class A 20 9 Op 4 2/0.000 - CDS 28357 - 29535 1395 ## COG5505 Predicted integral membrane protein 21 9 Op 5 . - CDS 29560 - 30651 1643 ## COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily 22 9 Op 6 . - CDS 30665 - 32080 1843 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases - Term 32513 - 32570 11.1 23 10 Op 1 . - CDS 32571 - 33263 464 ## MPTP_0551 putative CAAX amino terminal protease family protein 24 10 Op 2 . - CDS 33263 - 34444 1772 ## COG0192 S-adenosylmethionine synthetase - Prom 34472 - 34531 5.6 + Prom 34749 - 34808 9.2 25 11 Op 1 . + CDS 34902 - 35120 426 ## Cphy_2846 hydroxylamine reductase + Term 35132 - 35161 1.2 + Prom 35127 - 35186 7.6 26 11 Op 2 . + CDS 35209 - 37149 1897 ## TherJR_2662 S-layer domain protein 27 12 Tu 1 . + CDS 37216 - 38226 1012 ## COG0726 Predicted xylanase/chitin deacetylase + Term 38266 - 38311 -0.9 - Term 38381 - 38414 -0.1 28 13 Op 1 . - CDS 38435 - 39286 688 ## HMPREF9243_1941 transcriptional regulator, MerR family - Prom 39306 - 39365 4.8 29 13 Op 2 . - CDS 39372 - 39509 60 ## gi|282881937|ref|ZP_06290582.1| hypothetical protein HMPREF0628_0144 - Prom 39564 - 39623 7.8 30 14 Tu 1 . - CDS 40072 - 40968 845 ## COG2176 DNA polymerase III, alpha subunit (gram-positive type) - Prom 40993 - 41052 5.9 - Term 41399 - 41429 1.1 31 15 Op 1 . - CDS 41571 - 41660 71 ## 32 15 Op 2 . - CDS 41678 - 43387 1468 ## HMPREF0421_21238 hypothetical protein 33 15 Op 3 . - CDS 43423 - 43584 116 ## gi|282881963|ref|ZP_06290608.1| N-acetyltransferase MAK3-like protein - Prom 43628 - 43687 4.9 34 16 Tu 1 . - CDS 43717 - 45048 1414 ## COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen - Prom 45068 - 45127 9.4 - Term 45175 - 45218 0.4 35 17 Op 1 . - CDS 45317 - 45421 56 ## 36 17 Op 2 . - CDS 45482 - 46270 646 ## Clim_0126 hypothetical protein 37 17 Op 3 . - CDS 46273 - 49224 2504 ## COG0286 Type I restriction-modification system methyltransferase subunit 38 17 Op 4 . - CDS 49221 - 49490 308 ## gi|282881950|ref|ZP_06290595.1| putative nucleotidyl transferase - Prom 49515 - 49574 6.4 39 18 Tu 1 . - CDS 49618 - 49812 67 ## HMPREF0424_0627 hypothetical protein - Term 50193 - 50243 1.2 40 19 Op 1 . - CDS 50270 - 51124 951 ## EUBREC_2672 hypothetical protein 41 19 Op 2 . - CDS 51158 - 51655 463 ## SEQ_0762 hypothetical protein 42 19 Op 3 . - CDS 51656 - 53041 924 ## SEQ_0761 hypothetical protein - Prom 53061 - 53120 2.6 - Term 53111 - 53154 -0.5 43 20 Op 1 . - CDS 53179 - 53364 218 ## SEQ_0758 type II restriction enzyme 44 20 Op 2 . - CDS 53398 - 53568 62 ## SEQ_0758 type II restriction enzyme - Prom 53622 - 53681 3.9 45 21 Op 1 . - CDS 53693 - 53821 94 ## 46 21 Op 2 . - CDS 53883 - 54005 208 ## SEQ_0758 type II restriction enzyme 47 21 Op 3 . - CDS 53998 - 54189 190 ## SEQ_0757 modification methylase 48 21 Op 4 . - CDS 54196 - 54354 99 ## SEQ_0757 modification methylase 49 21 Op 5 . - CDS 54450 - 54818 380 ## SEQ_0757 modification methylase 50 21 Op 6 . - CDS 54846 - 54959 104 ## SEQ_0757 modification methylase 51 21 Op 7 . - CDS 54972 - 55100 181 ## SEQ_0757 modification methylase 52 21 Op 8 . - CDS 55170 - 55316 164 ## SEQ_0757 modification methylase - Prom 55388 - 55447 7.6 53 22 Tu 1 . - CDS 55503 - 55595 68 ## - Prom 55698 - 55757 9.3 54 23 Op 1 . - CDS 55761 - 56651 856 ## Rru_A2187 serine/threonine protein kinase (EC:2.7.11.17) 55 23 Op 2 . - CDS 56664 - 57065 503 ## Rru_A2187 serine/threonine protein kinase (EC:2.7.11.17) - Prom 57279 - 57338 6.9 - Term 57241 - 57301 0.6 56 24 Tu 1 . - CDS 57449 - 58294 737 ## Apre_0343 KilA domain-containing protein - Prom 58387 - 58446 8.9 - Term 58340 - 58378 -0.1 57 25 Tu 1 . - CDS 58564 - 58674 95 ## - Prom 58715 - 58774 8.5 - Term 58756 - 58790 4.4 58 26 Op 1 . - CDS 58930 - 59088 156 ## 59 26 Op 2 . - CDS 59075 - 61522 2404 ## COG1204 Superfamily II helicase 60 26 Op 3 . - CDS 61533 - 62300 576 ## SGO_0555 hypothetical protein 61 26 Op 4 . - CDS 62322 - 64304 1431 ## SOR_0978 AlwI restriction endonuclease family protein 62 26 Op 5 . - CDS 64305 - 66473 1545 ## COG0338 Site-specific DNA methylase - Prom 66507 - 66566 10.0 63 27 Op 1 . - CDS 66654 - 66998 80 ## SOR_0976 hypothetical protein 64 27 Op 2 . - CDS 67035 - 67181 216 ## gi|307243981|ref|ZP_07526102.1| conserved hypothetical protein - Prom 67345 - 67404 4.8 Predicted protein(s) >gi|281298187|gb|ADDO01000017.1| GENE 1 92 - 6673 7674 2193 aa, chain - ## HITS:1 COG:all5017 KEGG:ns NR:ns ## COG: all5017 COG4249 # Protein_GI_number: 17232509 # Func_class: R General function prediction only # Function: Uncharacterized protein containing caspase domain # Organism: Nostoc sp. PCC 7120 # 1326 1568 5 219 236 65 26.0 2e-09 MKEKNIYCKIGALFLVLTMLSSVLPISIFASGLTESKKFGDIPQNYWARKSIFKLAEEGI VNGYEDNTFKPDKKITRGEFISIINRSFKFSKKADTKFSDVSLGIWCYKDISIAVGEKYA SGYPDGTFKPNSEVTRAEATTFLAKIFSNNSAGKFHNPGKLDFKDEIPSWARDSINLMIE KGYVKGYPDGTFRANESITRAEVCALIDNAENGIKDFKKPFKEKDEKTTKGNVVESKRNS TTSGNGNNTYWRHSSYEPSKPDKPIVPDKPNAPNKPELPDKPSVPDNKSNSLKMSSVGNN LYLIEVNKETNKEEIKNILSEKYLSSKNYCLGKVFKDSTKVLLYAENLKIKCDKFSGKLP EVTSGIYMDKDGDFIAYDDQNPSENITLFVGEVKLDKPFKTSKVVLGLKGNQLNGGLDLQ SSTKRIEGLNFFLEKTPKESMIIDSAISQSGSTKMPVSDLEIINNTFNFGNNAGSAKNGI RILSSLDSGYLKINNNTFNGLGADIDGKNYNNAAIGINTRTKDGTLTEINGNKIQGYGYH GIGVAVSANASLSVEGNILEDIGQNGIDINLFGRGKDIIVKNNIISKYGSKEIKTTSFTD PNGKVGNRFEVGLGIAYVDKSVYGVKINEKYYNDKDKFLKDLFDINIIGSKAENDKNDGV FDCTPIYMGHQTRFKNPVDEINREYSRLQNEELIIVKDDDKDLVIPNETIKSKQVKAIKI VGNGSGKVVLNPSLVITDDLTIDLPNANLQNNANVEKEKVHILNIRDNDYSNFVIKPQFT NITLKNAQELPVEILEIEDKTGNEVTKEKSTLTNNIKVFVGDKETRDFRVDEENDKVILN KTLLDNLMKFTSIKIEYKDDSNNVSSVQKSFDISVDNNSSIKAEFIGTKEATIYESFAPN EGLNIRIQEIKDASGNNVEFSKVNFKEGLKVKISYGEAKKEDFVVNGDTITIKKSFLDMI STPVFGKSHDLVVSLTDLDNNILDAKATLKLNIVNNSNVKVEPVSTLTFTQGNAPINGMT FKITSIRNSKGQELGKNDIDLENCLDIEPFPTNWGDDSIENLGNGNFRFNKKYLDIDSDK KTITIKKEYLDKLQINDKDTEFGTKQIIVKYRDPRVGINFRSEKFIIHIKKALKPLSEDT AITSTKYEIKDDTIKPINNSINNKTSVSEFIKNIVRGNERQVLRVYSKEYINNNNLVSEY IYKYKKNYENIGNNDYLVVTAENGKNTKIYQIIFEGNQDNSLVISVKDKSIVSNFGTTFI EVSENATLEQIKNALEVQEEANIKIVNQDGEDVSDIKDGYGLIVQKGEQSEERTIKLKYA KKIYRALIVANSDYGNDKLNLIGPKTDKVLMKKVFENQEIDSNKFENITVVENAKKQEFL NKISEAFKGAKSDDVSYLYYSGHGNNVDGISYICTTDYAENKEKQVKLWISVNELREALD KVPGTKVLILDSCNSGGFIGKKVDAVTSPTPQPSLDINSKEFNDNIQRAFDNSLLRDRSV GYLTTNEYKVLTASSEDEYSFEDKKEKVGKFTKVLSRVAGINGDVVGDTDNNGKISLEEA YKYLEDNVVYTSHIQAFPRNDSYTIFEAGSNAKPISNDKKVTSAKNSENKDNLNIIINGD RGLIKSGEFKITDKVTVAEFLKQIQKGHPNQELKVVRLIPSRIEKKDTDMLEKLDYLEVT AEDGTKANYVITVEVSKEVSDLSITSKKDNKEIGFYTIIPSKKTISSSLKKITENTTVEE FLSNIEKGHAKQSLCVADKIGNTKNNNDKLASGDKLIVRVETGEKDEYTIILEAKKTGLV FINSAFTVETGAGPFGNKIKSGTKALDTNVTVEEFLRLIENKEEFLSIKVNSGMTHEPKV GKEKLEQGDYVFLAPKSGGFPQRYNLIVKVASFPSPGIEVSKVDFGDNFTVDHDKKTITS GRVKITTELTVGEFLGHVVNSNDFSKLEIRKAKSSDKLKEGNTLRIIAKNDPKKITKVYT LIFDDSEAKEIHPDFGGDFIVDSSNKFALKIKSQKTNITRTMTVKEFLSKLRNKDKFSSI KFKRSWDELTEESTLKDGDKMQVTINKSSSSLAPVSETKTYIIEIYKDLELEVPDFGGAY KFGTIKKNEISGDSEELTTDITVKEFIGKIKNADKYDSIKIQKAYEETIKKDTDKIESDD KLILKKGNKEAVYKLINVTNNNGGISIPSFSLD >gi|281298187|gb|ADDO01000017.1| GENE 2 6942 - 7424 446 160 aa, chain + ## HITS:1 COG:RSc1437 KEGG:ns NR:ns ## COG: RSc1437 COG2963 # Protein_GI_number: 17546156 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Ralstonia solanacearum # 1 117 1 114 177 78 34.0 6e-15 MAKYSTEFKMKVVKEYLETNISYESLSEKYKLSHQEIVKRWVNAYKSQGYEGLKVKRKNT QYTLEFKLNVVNLYLTGEMSYQSLANELKINNPSIITRWVKDFREKGIEGLEPKKRGRPS KMPKLPKKSKDIKIDSSANLTNLENNSLTEAQLKEKIKKL >gi|281298187|gb|ADDO01000017.1| GENE 3 7594 - 8391 568 265 aa, chain + ## HITS:1 COG:L0470 KEGG:ns NR:ns ## COG: L0470 COG2801 # Protein_GI_number: 15672806 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 2 260 13 266 272 254 54.0 2e-67 MYWQKRLNRSNKDKEIEDKILKIRKDNPNYGYRRITAMLKRSGLIINKKRVQRLVQNLKL QVKSFSRKSRKYSSYKGQVGKIADNKIKRNFRVEKPYTQITTDTTEFKYLEKDKAGNYQI KKLYLNPYLDMYNSEILSYEISKQPTLEPILKALDKAIEITNKAKEERIFHSDQGWAYQV KQYTSKLEENGITQSMSRKGNCLDNSPMENFFGILKQEIYYGNKFYSYEHLKQTIEDFIK YYNEERIKEKLGYLSPVEYRKKNAA >gi|281298187|gb|ADDO01000017.1| GENE 4 8511 - 9047 560 178 aa, chain - ## HITS:1 COG:BH1417 KEGG:ns NR:ns ## COG: BH1417 COG0212 # Protein_GI_number: 15613980 # Func_class: H Coenzyme transport and metabolism # Function: 5-formyltetrahydrofolate cyclo-ligase # Organism: Bacillus halodurans # 8 175 2 184 186 104 34.0 1e-22 MNKKELRKEFKNIRDNIKKRDLLSHQIGENLFESDLYKNARSIFTFISFRSEVETFEIIK RALEDKKIVTVPKVQGKDMKVIKIYSLDNLKRSPLGILEPENDDEFYNVDITLTPGLAFS KDGYRLGYGGGYYDRFFAKYRTKKVGLAFYDQLTDKIPKEEFDQKLDYLVTEKGIIEY >gi|281298187|gb|ADDO01000017.1| GENE 5 9040 - 9861 899 273 aa, chain - ## HITS:1 COG:SP0825 KEGG:ns NR:ns ## COG: SP0825 COG0190 # Protein_GI_number: 15900713 # Func_class: H Coenzyme transport and metabolism # Function: 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase # Organism: Streptococcus pneumoniae TIGR4 # 1 268 1 272 285 191 38.0 1e-48 MTKILTSKDLRKRLKEKLLEKIENLNEKPVLAIIRLGQRPEDLSYEKGLTKTAKELSIPV DIYKLEVQTKTIQLISLIEKLNEDKKVKGILIFRPLPKHIDEKEVALAISPQKDLDCINP INKAKIYDGDVNGFIPLSPKAAVMLMEDYGYNLAKRALIINRSQVVGKPLAMLLLNRNAT VTIAHSKTENIKELIKKSDYVFTAMGKMKSLDRSFFTEKSIIIDLSIGIDENGKLCGDID QEDVNDFVQAYTPVPGGVGSLTNLLLLESLIHE >gi|281298187|gb|ADDO01000017.1| GENE 6 9866 - 12442 1874 858 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282881952|ref|ZP_06290597.1| ## NR: gi|282881952|ref|ZP_06290597.1| hypothetical protein HMPREF0628_0117 [Peptoniphilus lacrimalis 315-B] hypothetical protein HMPREF0628_0117 [Peptoniphilus lacrimalis 315-B] # 1 858 1 858 858 1389 100.0 0 MTVKKVLLKSLDSKINLDDFDDEGLFYILPTEDSLIDKRVNYIHDKGFLKNIKFMTFDAL FFQTSPPTNPNPLYSFYVLKKILKKYFPKEEYFHDFSKNIYDFFNDIFVEGIDFSSLLTF KDTFIKSLYEVIEEYESFFAKKNMTLYKAYRKSICQLKIKTLIVDGFVDFRYWHLKLIED ISENSDVYIHLPFNLKEFNLIEKNLEIFKKMGFEIECDDAKELDSYLKGKNIEIIKGQNF YNNMVFSYIKKSINESSIKNLSIILNDKSMGELLYACQDLEELSFDLDRKIFDFIGDQIK VYFNFLDKKNRDNIILRTQLHYIPISQDVDKILQVLYMNNFSRIEDFDEKFKDNLFIDKN HIGDFLDFVDKIKTEKIDPYNDLDYYINFLKNLEDEIREILDRDFENLKDAEIYRVGNLS LDQIDKFINIVDSFKDMYDKISFKEFREILFTYLDSISLKSLRNYEGIKTASLDKIYYSN NEIGIYLSYDKNKNLYKKNFIYNDDNMEDLKRIGLVKDYNQIELIELIYRLCNDKKSIFL IKNDEISNSLNLIKTRGNIEISTYEDNYISSALNAYENINREDDFKLDSTNICQLKRILE NRSFSATDFDSYVKSGRDFLIERVFKIEEYEDSFKEVDYLKDGSIYHKILENYFKNRKVY DEDYLKNLIMKETFPKCSKVEDLSFSEKFKFIKDFSYLLDIVRADTDANRINKDFIPKLF EQRFSFDIGPINLVGSIDRIDAKDDEEILIDYKSSNSSTRTASDVFNNKSFQSVIYALAR KNKDKKIAGFYYKIIKNFKNVPIFVNEKYIDKYDKGRFYKSDDEINELLDNSTNKIIELY KDMCDGVFYNEDEKKKGN >gi|281298187|gb|ADDO01000017.1| GENE 7 12439 - 13389 817 316 aa, chain - ## HITS:1 COG:CAC1015 KEGG:ns NR:ns ## COG: CAC1015 COG0564 # Protein_GI_number: 15894302 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthases, 23S RNA-specific # Organism: Clostridium acetobutylicum # 3 297 2 306 318 164 36.0 2e-40 MRKVIIGPNDSDQRLDRFLKKYFEKAPLSFIYKNLRKKNIKVDGKKASPEDLIKEGQEIS LFISDETIEKYKKDKLARNSQKFPQILYEDDNICLMKKPLNMLTHNDKNFYQDNMVDRFI DYLIFKEEYSPREENTFRPSICNRLDRNTSGILLGAKNAETLREINKAIKERLVDKFYLT IVKGKVQKPFEINIKLEKTDKNIMRKSSQGKDSLTKFFPLISNGEYSLLKVKLITGRTHQ IRASLKEKGLYILGDRKYGTGKDKEFNSQALHNYLIKFNLDGELSYLNNREFKMMPPKKL SQLIEEKFNVRVDEIL >gi|281298187|gb|ADDO01000017.1| GENE 8 13458 - 14135 656 225 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282881943|ref|ZP_06290588.1| ## NR: gi|282881943|ref|ZP_06290588.1| hypothetical protein HMPREF0628_0119 [Peptoniphilus lacrimalis 315-B] hypothetical protein HMPREF0628_0119 [Peptoniphilus lacrimalis 315-B] # 1 225 1 225 225 376 100.0 1e-103 MKNFNKISMTFMKILQVVFIIFIILALAFIIKWRIDHIYLNANTKGKAHFTISAEIKKTT IEIEKLLGKNEESYQVPVVEEVQEEKNSLQITVPEGSDVESLGKILLENNLIKDINAYKL LMERMGLDKAIVPGTYDIKNGMKVKEILALICNRQIKEFEFSLAQGVNVDDVGRALKNIG LIQSVDAFKTECKNLGVNSFKAGDYKIEAPLKVKYIIDEIKSDEI >gi|281298187|gb|ADDO01000017.1| GENE 9 14275 - 15174 668 299 aa, chain + ## HITS:1 COG:CAC0168 KEGG:ns NR:ns ## COG: CAC0168 COG1295 # Protein_GI_number: 15893462 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Clostridium acetobutylicum # 20 280 8 263 273 146 35.0 5e-35 MDKFLKKYKNNKTLNFFDKLLYRLKENDITSYGAGLAFFLILSIFPFLIALINIVNFLDI INVDNILNLMQYFPNSVKEIVKNFFIELNITSSTELLSISVLAGLFSASSAINKLIKFIN NSYGFEDNRNFFLNRVLAIIFTLLFIFMILLLIVSQVFGKIIFYKFISIFHIDSKIIYFL WIIANSLIPLIYLFLTFSAVYRFAPCPPKNDKIKYKTVIPGSLFSTFAVIIATVIFAFYV NNFGKYSITYGSLGGIIVFLIWLFLLSTLILIGAEINIVLYSLKKGNHEENRKDTIIYK >gi|281298187|gb|ADDO01000017.1| GENE 10 15181 - 15780 631 199 aa, chain - ## HITS:1 COG:HI0434 KEGG:ns NR:ns ## COG: HI0434 COG1040 # Protein_GI_number: 16272382 # Func_class: R General function prediction only # Function: Predicted amidophosphoribosyltransferases # Organism: Haemophilus influenzae # 8 192 24 221 229 87 29.0 2e-17 MKKLFKRCPICGEKLEKFNLCKNCLDNLEFDPYHSYKIDGLRDVLVSFQYSGIGKELIKR FKFNGELFLDQIIGDLMIEKLLKTSYLSEFSNITYVPMTKKKKSIRGFNQSKILAQYIAK NLDLNLIESFEKIRSTKEQVGLDKNDRQKNIKDAFVIKNYSSDIIIVDDVITTGSTIREL VKLTSKEGIKTLALIAATQ >gi|281298187|gb|ADDO01000017.1| GENE 11 15764 - 17947 1967 727 aa, chain - ## HITS:1 COG:CAC2854 KEGG:ns NR:ns ## COG: CAC2854 COG0507 # Protein_GI_number: 15896108 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member # Organism: Clostridium acetobutylicum # 1 716 1 726 739 550 44.0 1e-156 MINIDGIVEKIIFRNDENGYTVAKFLSEDESIVVVGSCFEIFEDRSYKLKGDFTYHKKFG QQFAFTSIEEILPNSKEALIKYLSNGMIPFVGEKVARKIVEEFGENTLEILEKNPQRLLS IEGIGRKKYKKIYEALGKNLNARKILLYFSSYNISPNLALKIYKEYGDKSIDVIKENPYV LIEDIGGIGFKKADQIALSFGIKKDSEERIIQGLKYVLSRANLNGHTYLPLDILVKNANK LLGISIDDLENSLRGLSFSKDFYVDKVGNDYLCYYAPYLRAENYIAGKLNEINITFHEDL DVNKKIEEIEKTRNIKLAHGQRQAIKKSLDHGVFLITGGPGTGKTTALKALIDVYEFMGK KIKLAAPTGRAAKRMKESTGHDALTIHKLLEINFTDSKDIYYDPIDLECDVLIVDEMSMV DIMLMETLLRSLEKGVRLILVGDPDQLPSVGAGNVLRDIIDSKLFSQVNLVEIFRQKEES MIIKNAHLINKGERPILNNNDFFLISEQGENKGLEIIKDLLSKRLGEYYGIDSSDIQVLS PMKKGLLGTFNLNKVLQELLNKSQEKIEVFGKTFKLYDRVIQMKNNYDLEAIIENDFYKE TTKGVFNGDLGYISSIDVEEKILEVTFDDAKKVKYLPEDLDQLELSYAMTIHKSQGSEFP VVVIPLFWAPPMLLTRNLIYTAITRASKLVVLVGKYEYLMKMIENNKTRIRYSNLKNKLI EANEKVI >gi|281298187|gb|ADDO01000017.1| GENE 12 18044 - 18826 753 260 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282881953|ref|ZP_06290598.1| ## NR: gi|282881953|ref|ZP_06290598.1| putative lipoprotein [Peptoniphilus lacrimalis 315-B] putative lipoprotein [Peptoniphilus lacrimalis 315-B] # 1 260 1 260 260 419 100.0 1e-116 MKENKKFLITLVLTMIFLLACSKNSDKTENTGKIPEDKNKVISSFIYDEDLKSYTLKTES LWQVDSSDKKEKTESMGLFETIKDEKISHIKWENDEGDNKSQNEEFIIGNVIFNRDNKGK WTKLSTDKKLSDGKENKTYFTGKTLISSKIILNKLGKYIKLTEDKSFYIAELDSNSSNIK EIRKIIFPNYEDKSFFGELTSLKGKFVFRKDNFYPNSFELQGEFLNKDNNEHTIIRQRGA YDKVNKLEKIEIPIEITNLF >gi|281298187|gb|ADDO01000017.1| GENE 13 19024 - 19932 1358 302 aa, chain - ## HITS:1 COG:FN1732 KEGG:ns NR:ns ## COG: FN1732 COG0253 # Protein_GI_number: 19705053 # Func_class: E Amino acid transport and metabolism # Function: Diaminopimelate epimerase # Organism: Fusobacterium nucleatum # 5 215 8 222 265 89 31.0 7e-18 MKKSFNYFKANPAGNITGFVVWPVYPGYRKAYADCIRSQIDSDVEQVGFISPAYEGAPLR LDMMGGEFCANASRAYGLYSASFYDVEGPVDIEVYVSGKKGTTNVIADVTNSTAYVAMDN PINISDIEIDGKTYKIFEFSGISHLVVEEKEDKEFVEKALKALKEKVQTDAYGVIFFNKE EKSYVPYVNVIKSQTLVRESSCGSGVIALANYLNEEIPGEDYQLTLKGPAGDLTVTVDTF EGEKKYLVGGHVEMEKPRKVTIDIPADVVKAVTEEHNKHVEEEKLREAKEKVTQEEKDKE EE >gi|281298187|gb|ADDO01000017.1| GENE 14 20193 - 21503 1611 436 aa, chain - ## HITS:1 COG:MJ0326 KEGG:ns NR:ns ## COG: MJ0326 COG2252 # Protein_GI_number: 15668500 # Func_class: R General function prediction only # Function: Permeases # Organism: Methanococcus jannaschii # 1 435 1 434 436 369 49.0 1e-101 MNSSFLERKFSLTKRGTNARTEFLAGLTTFMTMSYILIVNPTMLGKAGMDQGGVFTATII SSVIAMLFMGLYANFPFALSAGMGLNAFFTFSIVIGMGHDWSYALTAVFLEGIIFIFLSI FKVREALFKAIPLQLKNAVSVGIGLFIAMIGATNSGIIVANESTFLALGNLVSKEVLVTF FSLLIMGILSAKKVKGALLYGIIGGTVLGLILGVTHLPSQGILSLPPSLKPVAFKLHWDN IFTLDMFSVMFTFLFVDIFDTLGTITGVATKANMLDEKGNLPGIGKALLSDAIGTVVGAL LGTSTITTFVESASGVTDGGRTGLTSLSVAFFFFLSLFLFPLFSIVPSQATAAALIIVGL FMMSPIKNIDLDDYTESLPAFLTIIMMPFAYSIAEGISIGMISYVFLKVTTGKYKDVSPV MYILAIVFIVRYIRMF >gi|281298187|gb|ADDO01000017.1| GENE 15 21648 - 24227 1793 859 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 1 852 1 806 815 695 45 0.0 MNFEKYTQKSLQAIKDATDIAREYGNPQVKEIHLNYALLNDNDGLIPRVLDYMDVNKEAL KSELLRVIQRLPRQSGGSLSADESYTKVLDQAEKNMTKFGDDYLSVEHIYMALLNLKGTD SSSVFKKYGINSDNFLSALQKIRGNQNVRTDNPEDTYDALKKYGRDLTKEAKEAKMDPVI GRDEEVRNVIRILSRRTKNNPCLIGPPGVGKTAIVEGLAQRIINEDVPEGLKGKTVFSLD MGALVAGAKYRGEFEERLKAVLSEVEKSEGNIILFIDEIHNIVGAGKTEGAMDASNLLKP MLARGELHAIGATTLDEYRKYIEKDPALERRFQKVIVNEPSVEDTISILRGLKSKYEIFH GIRISDSAVIAAATLSNRYITDRFLPDKAIDLMDESCAMLRTEIDSMPTEIDDVRRKILQ LEIEREALKKEKDDASKKRLENLEKELSEEKSDFDRLKSRWESEKKEIDKEKVVKEKIEN VNHQIEEAQRSYNLEKLSELRYGTLPKLEEELKELQTNKKDDTMVKEEVTEDEIAYVVSR WTGIPVEKLNQSQRDKLLDLGNILHKRVIGQDEAVQVVTDAVIRARAGLKAENRPIGSFI FLGPTGVGKTETAKALTEALFDDEKNMIRIDMSEYMEKFSVSRLVGSPPGYVGYEEGGQL TEAVRRKPYSVILFDEIEKAHPDVFNILLQVLDDGRLTDNQGRTVDFKNTVIIMTSNIGS QYLIDGIEENGQISQSARNEVDKELRSSFRPEFLNRVDEIVLFKPLVKDQIYKIIKQTIK DIEEKLSDRQIKIEVTQEALEFILKASFDINYGARPVKRYINQSVETKLSLLLIKGEVTE NSTVIVDVKNNELDLTVKK >gi|281298187|gb|ADDO01000017.1| GENE 16 24238 - 25170 1328 310 aa, chain - ## HITS:1 COG:all1488 KEGG:ns NR:ns ## COG: all1488 COG2214 # Protein_GI_number: 17228981 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: DnaJ-class molecular chaperone # Organism: Nostoc sp. PCC 7120 # 2 307 7 299 315 179 34.0 9e-45 MEYKDYYKILGVDKNSSPKEIKSAFRKLAKKYHPDLNPNDPKAQEKFKEINEAYEVLSDK DKKAKYDAFGSNYDFSGGYNFDPSAYGYTYTTGGSSEDFSDFFDMIFGSNARRASSAKGS RFSFNLDDLFSGRNSNRTNHNYAKADSPKYESELSISIEDAYKGVDKKVGLSINGKQKEI NVKIPRGITRGKKIKVKGSKFDLPGDVLFKININDSDNLRLKGIDIYKNVEVRPWTALLG GEKTIDTFEGKIKIKIPKNLSPGKKLRIPDKGFKDMKNNKGDLYIEFTIANPTNLTKEQL ELYKKLEEIS >gi|281298187|gb|ADDO01000017.1| GENE 17 25307 - 27169 1727 620 aa, chain - ## HITS:1 COG:no KEGG:FN1582 NR:ns ## KEGG: FN1582 # Name: not_defined # Def: hypothetical protein # Organism: F.nucleatum # Pathway: not_defined # 37 477 8 456 456 488 55.0 1e-136 MKNRFLKFKIFCTIVLTILLLSVNLYAASDNSNSEVKEAVYLGVENYGNLKKDKDEKSLK NFEHKFFIDGQIKNFKIKSDETKSDGLPKFLTQNKLWEGYIYKVKIDNNEIVDAELLNSN SKDLIKGKLSDISAEELKVDGKSIKLNNDSKIYKINWLAGGTLVEETDFDKAKNASVKVT LDKDGNAKNIYITFIRKDYKAPVSYEPGKKTLKNFLSSALQPVGTTLYVYGGTWDWQDDG SSLNARTIGLSESWLDFFQYQDQNYSYSLDKKDNAKDYYPNGSWNQYYYAGIDCSGYVAW SVYNTLNDKSGNEGYVMSATKMAKNFASRSWGTYTNDYSIPTNDKNSDFKVGDIFSMNGH VWICLGTCSDGSIVIMHSTPSDSKNGKPGGGVQISGLGYDKNAKAYKLADYYMKKYYPEW DERYGAVLKNIKDYTTIKKDTDAGKFSWNLKNGILSDPDKYAEKSPEEILKDLFNEKENS AQEVIFTIDKNEYKKIIDGKESSFNMDVAPIIKQDRTLLPIRYLAESLGAKINWDKNTRT ATFIKNDEKVSVQVDTGKILLSNGQEYKLQNKVLIKNDRILLSLTNISKLFKMTNGNIND GISQDIEWDGSLRTVSVKIK >gi|281298187|gb|ADDO01000017.1| GENE 18 27174 - 27515 317 113 aa, chain - ## HITS:1 COG:no KEGG:FN1583 NR:ns ## KEGG: FN1583 # Name: not_defined # Def: hypothetical protein # Organism: F.nucleatum # Pathway: not_defined # 1 109 8 116 117 111 54.0 7e-24 MKTKSIYFTGEARTTMDNAITKIYGTFYMAFEVDASNGKIIRTDCNGTMKLTKDFINRIF EGKIFDDDEDKIIEEISERYYASSTRAIVVAYRDALQKYKKVKKDILEKNSKE >gi|281298187|gb|ADDO01000017.1| GENE 19 27518 - 28306 846 262 aa, chain - ## HITS:1 COG:FN1584 KEGG:ns NR:ns ## COG: FN1584 COG2367 # Protein_GI_number: 19704905 # Func_class: V Defense mechanisms # Function: Beta-lactamase class A # Organism: Fusobacterium nucleatum # 1 260 1 259 264 254 55.0 2e-67 MSDYLKIKKHIEKIISESSGNICLSFYDLDDEEGFFINEDKKVRSASMIKLLIMAEIMNQ SKNGKISLDTKIKVGKKDKVGGSGILKEFDCEHEFSIKELMTLMIIVSDNQATNILIDLV GMDNINLMGKRLNLKSASLQRKMMDIKALEKGRDNYISAKDVKVILEKIYRKTLVDEKSS ELMLDILLRQHERQRLGRFLDEEVKIASKTGDLDKLENDGGIFFLENKNYILVVLIDDAV TNAMAQETIGKISKYIYDEMGR >gi|281298187|gb|ADDO01000017.1| GENE 20 28357 - 29535 1395 392 aa, chain - ## HITS:1 COG:FN1585 KEGG:ns NR:ns ## COG: FN1585 COG5505 # Protein_GI_number: 19704906 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Fusobacterium nucleatum # 1 392 1 392 393 573 84.0 1e-163 MVINNGFTYIAFLMFLAGALLALEKYTKWKIFNVVPPLVFIYVFNMIFCTMGLYSSEACS NAYSGLKNNLLYAMIFVMLLRCDFRKLAKLGGRMVAIFLGCSFTLFVGFLVGYPLFKSTL GTDTWGAVAALYASWVGGSANMAAMQAALPVDAGAYSCALALDTVCYSLWIALLLLAVRF APKWNKATKADTSKLQEVADAAEAEVAKGKKTASSADWIFLIGLSLIVSAISQAVGAKLS DVFTNMGLAMFDKGTVVTLFVTILGLICALSPLGKLPAVEELSNVYLYAVVSLLASTASV VDLLSAPMWVVYGIFILVIHVVLMFVLSKIFHWDLCMVSTASLANIGGSASAPIVASAYD ASYAGIGVLMGVLGAAVGNFFGIGMGQILRMF >gi|281298187|gb|ADDO01000017.1| GENE 21 29560 - 30651 1643 363 aa, chain - ## HITS:1 COG:FN1586 KEGG:ns NR:ns ## COG: FN1586 COG4948 # Protein_GI_number: 19704907 # Func_class: M Cell wall/membrane/envelope biogenesis; R General function prediction only # Function: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily # Organism: Fusobacterium nucleatum # 1 363 13 375 375 596 82.0 1e-170 MKITDIKLGKISVPLRVPFKTALRSVNSVEDVIVEIHTDTGEIGYGEAPPTGAVTGETTS SIIGAFKDHITKTMIGRDIDDFEDNMKALNSSIVKNTSAKAACDMALWDLYGQLYKIPVY KLLGGSRKKIVTDITISVNPPEEMARDAINAIKRGYDTLKVKVGIDPSLDVKRLQAIRDV VGKDVKIRIDANQAWKPKEAVRLLNQMQENNLDIELVEQPVAAHDYEGLKYVTDHSYVPV LADEAVFSAEDAMTILQMKAADLINIKLMKCGGIYNALKITSMAELCGVECMIGCMLEAK ISVNAAVHLACGKGVITRVDLDGPVLCSEDPINGGAVFNEKEITVSDAYGLGISGIDGIK YLD >gi|281298187|gb|ADDO01000017.1| GENE 22 30665 - 32080 1843 471 aa, chain - ## HITS:1 COG:CAC2723 KEGG:ns NR:ns ## COG: CAC2723 COG0624 # Protein_GI_number: 15895980 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Clostridium acetobutylicum # 19 469 8 464 465 383 45.0 1e-106 MWLNYYERDGSRLDLKNYVDGQKDNMLKTLSEVVSINSVRGEEKADAPFGEGPKKCLNFV LEKAKELGFKTKNMDNYMGWAELGEGSEMIAVMGHLDVVPEGSGWDKDPFSGQVENGNIY GRGTMDDKGPTVACLYALKAIKESGLPLKRRIRILFGTNEETGSDDMKYYRENGGEIPFC GFTPDGEYPVINGEKGIINATFKKDLDQKSDLILKKISGGTAFNVVPAHAKAEFACQESL KKEILADKKFSEKIKIEETKDGFIVEAKGLEAHASTPEKGNNAIGNLLIAIKDFPMDKEL KKAVVFLAEKIGLETFGQSLGIDIYDDNSGKLSLNMGVIEGDENFLEVKLNYRYPVTRSY DECAPILDKQFDQVGFKKIFEKHKNSLFVDENTEFIKILLDVYKEHTNFKPHTKSIGGGT YAKALPNIVAFGPIFPGDEIREHLPNEYWEVEKIFLNMEIYADAMYRLANM >gi|281298187|gb|ADDO01000017.1| GENE 23 32571 - 33263 464 230 aa, chain - ## HITS:1 COG:no KEGG:MPTP_0551 NR:ns ## KEGG: MPTP_0551 # Name: not_defined # Def: putative CAAX amino terminal protease family protein # Organism: M.plutonius # Pathway: not_defined # 51 224 70 249 253 81 35.0 2e-14 MLEAKRKYPEINASLFRWILGILVCYGSLLVSSLIIYLFNIENLIIPALIMSFLSIMGAL IIDKNILRKLFLFLNFKDVIFVFVGLIISFIFIIFASFAATYFKIGGEVNPIFGLLDKFS KSEFLISSAIQFIGEELMFVLPFLFVINKFKKTPKIIRVFLAVIISSLLFGALHIPTYNF NIVQALVLIGIVRTGITITYIFRKNLTVSYIVHFLYDWIIILMAIKYSPM >gi|281298187|gb|ADDO01000017.1| GENE 24 33263 - 34444 1772 393 aa, chain - ## HITS:1 COG:BS_metK KEGG:ns NR:ns ## COG: BS_metK COG0192 # Protein_GI_number: 16080107 # Func_class: H Coenzyme transport and metabolism # Function: S-adenosylmethionine synthetase # Organism: Bacillus subtilis # 5 390 7 396 400 530 64.0 1e-150 MKKWIFTSESVTEGHPDKVCDQISDAIVDEILKDDKDARVACETMATTGLILITGEITTK TYVDFTKIAREVLEGIGYNRAKFGFDATTCAVLSAIKDQSADIAMGVDRFKDKNFDEDEF DAIGAGDQGMMFGYACKETDEYMPLPISLAHKLSRKLSEIRKNNTLEYLRPDGKSQVSVE YENGVPKRIENVVISTQHSPDVSIKDLRNDIKKEVIDTILPKNLVDENTSFYINPTGRFV VGGPMGDAGLTGRKIIVDTYGGYARHGGGAFSGKDPTKVDRSAAYYARYIAKNLVASGVC DKVEIGLAYAIGLARPTSIYVETFGTGKISDNEIEKLVNRHFDPRPAAIIKNLNLLRPIY RQVASYGHFGRNDLDLSWEKLDKVDEIKKDLNL >gi|281298187|gb|ADDO01000017.1| GENE 25 34902 - 35120 426 72 aa, chain + ## HITS:1 COG:no KEGG:Cphy_2846 NR:ns ## KEGG: Cphy_2846 # Name: not_defined # Def: hydroxylamine reductase # Organism: C.phytofermentans # Pathway: not_defined # 2 61 562 621 621 76 60.0 4e-13 MKLRKDMLIGEILSVKPQSIGTLMSFGMGCIMCPASQMETLEEAAMVHGIDPDMILNALN AEDDKNKEESEI >gi|281298187|gb|ADDO01000017.1| GENE 26 35209 - 37149 1897 646 aa, chain + ## HITS:1 COG:no KEGG:TherJR_2662 NR:ns ## KEGG: TherJR_2662 # Name: not_defined # Def: S-layer domain protein # Organism: Thermincola_JR # Pathway: not_defined # 1 620 9 684 716 77 22.0 2e-12 MKKLLIPFLIFVLSFSFVYGQNKEKQDVLRLKGIFNIDKEYGDFNFSEEAYDKGDLPKFL KDRVKNNNLLNYYWSDENLGNISITTSQDGQIFNYRAYSNRENNNTENISIDRKKAKEVA EDLLKKIDPNFFNKYKFQDISIENERKNITFTYIRYINDIAFFEDKAQITYSPSENKIIN FSKYDGYNYGLSLLKDEDFKIEDKISLKKAIEISKKHQPLQEAYMVNSKNVNKVYSALDF RAISAKNGQLLKKDDVNYVTTYKGADEAVDKASLTDVEEKTLDNIKNLKSKEDALKIAKE ILGKDIKISQVKLTSQNDNYTYFIENYNKNKGGEVSIDAKNLNLLSFYTSSDDKSGKIED PKEVIKIAKAFTEKYYKDSEISLDKAQVNANTVFFPRYVNNRYVIGQGINIEINSKTKKV QYFMSNKSRANFPKDKYKLSVDEAQDILYSSNYFTKKYVLDSKGIDLIYHTKTSDNPTIS EDGFIISSYGEIVDFKDQISYPDLDKAKNKDIINNLKDMGIGLINKKLKDPISTRDFINL VSFQNNPFEVDNYLLKKYDINERDLDKKIKEKDLIKLLISINSNEEFLKLKGIFKEDLFE NQKSLKDYEIYYIYAKGYGIFNQEPSPQSPVNLEDALYMIYGFYNK >gi|281298187|gb|ADDO01000017.1| GENE 27 37216 - 38226 1012 336 aa, chain + ## HITS:1 COG:CAC0090 KEGG:ns NR:ns ## COG: CAC0090 COG0726 # Protein_GI_number: 15893386 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted xylanase/chitin deacetylase # Organism: Clostridium acetobutylicum # 132 336 88 293 293 140 41.0 3e-33 MDEVKDEKYLRRRQRAKKRKRKRQMVSVGTLILLIFLIVSCANRKIHNAKLSKVELSQDM TWYIGKSQGIRTKKKMFDKKQDSIIPLLKIDSLKDHYLVKNSNHLKIASSYAYDAKKINS YIENNSYKGNDKIVFLTFDDGPNTQVTPKILDILKKNNVHGTFFLVGKSINESHAGVIHQ ILNDGNAIANHSFSHDYKTLYPGRVCDPQIIKKEVELTNQRLQKILGKDFKAKVFRYPGG HMSWENTDQADLALSSIDVQWIDWNTLVGDAEKRSERPTTIEGQVEYVKKNLDKNKNTKI AVVLAHDSKGKELTVEALPKVIDYFKSNDYKFGVLK >gi|281298187|gb|ADDO01000017.1| GENE 28 38435 - 39286 688 283 aa, chain - ## HITS:1 COG:no KEGG:HMPREF9243_1941 NR:ns ## KEGG: HMPREF9243_1941 # Name: not_defined # Def: transcriptional regulator, MerR family # Organism: A.urinae # Pathway: not_defined # 1 274 1 273 280 229 46.0 1e-58 MLRSEIQKETGLTRKAIEYYEDRGLIHPQKSENGYRDYNIKDLEILKKVSIFRKLGMSIS DIYQCISSGGDSLYSVLREKQHQLDLDEKRKVILEMIVKGESNELINEKVSLLEMKETIY EKLEIAFPGYFGQMFFAAYQPFLNEPLENDGKDSFYKYIDYLDRLPAFELTEEEKKYIDK ISSPFDMKTLKDINQAKVDAIENPEKWMKDNEDVISQYESYKNSEEYQNSMMKQIQDKLK NFMKENQYYEIAIPLIRKFSKSYDNYYKKLLKVNKEYLNNKYQ >gi|281298187|gb|ADDO01000017.1| GENE 29 39372 - 39509 60 45 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282881937|ref|ZP_06290582.1| ## NR: gi|282881937|ref|ZP_06290582.1| hypothetical protein HMPREF0628_0144 [Peptoniphilus lacrimalis 315-B] hypothetical protein HMPREF0628_0144 [Peptoniphilus lacrimalis 315-B] # 1 45 1 45 45 74 100.0 2e-12 METFKLYSKQVNYATINVGFSVGLNKTYQKENKYFTKMLRHCFGL >gi|281298187|gb|ADDO01000017.1| GENE 30 40072 - 40968 845 298 aa, chain - ## HITS:1 COG:FN0281 KEGG:ns NR:ns ## COG: FN0281 COG2176 # Protein_GI_number: 19703626 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit (gram-positive type) # Organism: Fusobacterium nucleatum # 13 177 426 595 1454 124 41.0 2e-28 MANKNYTKQIINDYCVLDTETTGLSSYYDEIIEIGILKVRDNKIVDRYSQLIKPDYEIDS FITSLTGITNEMVKEMPAINFVMSDVLSFIGKDVIIGHNTSFDIRFLNAGFNIELDNKYM DTMQFARKLFPELKHHRLSDLTSYLGLSNNEHRSIADCIATKELYDSIKDTMTKRGLGIQ DLWVKSNHGGKGIDIKSIHPTEVEIDEDNFFFNRHVVFTGKLEKMIRQDAMQIVVNLGGI LDNSVTKSTNYLILGNNDYNAILKGEKSSKHKKAEKLKLEGQDIEIIDEFTFYDLIES >gi|281298187|gb|ADDO01000017.1| GENE 31 41571 - 41660 71 29 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MDLVILEKNRVQYFEWFGIHRTFGKEEWE >gi|281298187|gb|ADDO01000017.1| GENE 32 41678 - 43387 1468 569 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0421_21238 NR:ns ## KEGG: HMPREF0421_21238 # Name: not_defined # Def: hypothetical protein # Organism: G.vaginalis_ATCC14019 # Pathway: not_defined # 1 554 1 560 568 592 63.0 1e-167 MAGLNDFKLVNIYSIELLRRKLNIEQYNELSDSNKKRYGFYYLILQLTTGETELEELEKM IIDSDYCNSIYKVKNNDYGIDAVYVDYESNHILLYNFKFREKYDAKIGGKQGPILDSTKF LSMTLNDSFKDIDVDLISKKKMEEISNKVNSDEIWNIELIIVSNENQGIDINQPEIKSIS KDFDVEIKPIVLDDIIGFLHNRNSKFSAKIIVDKESFLVYEEDSLSSAKSYLIKLSVANL IRITCTDEKERNNYNYTNLEMIKDVNLEMGILYENVRGYLSNSKYNKNIIKTLSDSPQKF FMFNNGITITAKNVKSESKNVNKKYLFTLENMQIVNGGQTLRSIYKFKEEDFDEEKLENS YVLVRIFKTEDNDDLIYEIAEYTNSQNAISDADLKSINKMQIKIEKFLYNQGIDYIRKSG DIGIDRGLESQISKERLAQILYSYKGYPDRSTNQKKKLFGVYYDDIFGDDVIDFNALLKL IKLYNEIEENYRNLYGESEVYTQKILYIIYLQSLRDDITENIYLLEKCLKDYRKSDDISK ARKLIQKGFKDFLDKSFNSGAGTETGLKI >gi|281298187|gb|ADDO01000017.1| GENE 33 43423 - 43584 116 53 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282881963|ref|ZP_06290608.1| ## NR: gi|282881963|ref|ZP_06290608.1| N-acetyltransferase MAK3-like protein [Peptoniphilus lacrimalis 315-B] N-acetyltransferase MAK3-like protein [Peptoniphilus lacrimalis 315-B] # 1 53 1 53 53 72 100.0 9e-12 MPILSNKVKLNEIYKTALESNKLRYIAYKQKQDAINIMNKEVLGLYKYLYKNI >gi|281298187|gb|ADDO01000017.1| GENE 34 43717 - 45048 1414 443 aa, chain - ## HITS:1 COG:UU038 KEGG:ns NR:ns ## COG: UU038 COG2865 # Protein_GI_number: 13357594 # Func_class: K Transcription # Function: Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen # Organism: Ureaplasma urealyticum # 22 439 30 457 463 88 24.0 3e-17 MSRYIESETMELKEKYTDTITKEIVSFLNSSGGSIIIGVKDDGVVVGVDKVDEILRKISD IITSQIEPNPQDEISSELKFHEGKTIIVIHINKGHHHIYCQKKYGFSSTGCTIRIGTTCK EMTPEQIKIRYEKKFIDNEYMLKKKSNSSDLSFRELKIYYSEKNYHLEDKSFETNLNLRN EAGEYNLLAELLSDKNNIPFIFVKFQGQNKASISERSDYGYGCILTTYGKIKNRLQAENI CISDTTVRPRKDTYLFDFDCVNEAILNALVHNDWTITEPQISMFNDRLDILSHGGLPNGM TKDQFFDGISKPRNATLMRIFLNMGLTEHTGHGIPTIVEKYGKDVFEIENNYIRCTIPFD QKVIEKIDNKNVGLNVGLNVGLNKTEKKVIELLIEDSSFTSIELAEKIGVTKRTIERAFK SLQEKKMIERVGSKRDGNWIVIR >gi|281298187|gb|ADDO01000017.1| GENE 35 45317 - 45421 56 34 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MDLVELEKIKSSILNGLGYIERLEKKNGNNRKFF >gi|281298187|gb|ADDO01000017.1| GENE 36 45482 - 46270 646 262 aa, chain - ## HITS:1 COG:no KEGG:Clim_0126 NR:ns ## KEGG: Clim_0126 # Name: not_defined # Def: hypothetical protein # Organism: C.limicola # Pathway: not_defined # 15 232 6 218 243 88 27.0 3e-16 MIEELNYVDVPYLQDIIAYLPIEPDDEEDIINYINNITNVVAVNYKYEQYQFAYFGIHLL FMTYVYCTAWKIAQIEVDRYKDAIVFARPYNGRERDFKIENADSIFVYSLMPEKDISKLF KIIELDNSQISIISDLVDTRNDMAHASGKFYILNEESFEVKVNSIFTSIKNIHRHMNCPI RNWYEKVLLSFCKGEYEGYDDPKDIIVEQMIQSFKLSINELLICNKMSVRNLISEHTEYK DKLKSFKEEIKKYCDESGYIQD >gi|281298187|gb|ADDO01000017.1| GENE 37 46273 - 49224 2504 983 aa, chain - ## HITS:1 COG:ECs5307 KEGG:ns NR:ns ## COG: ECs5307 COG0286 # Protein_GI_number: 15834561 # Func_class: V Defense mechanisms # Function: Type I restriction-modification system methyltransferase subunit # Organism: Escherichia coli O157:H7 # 165 527 18 384 493 139 26.0 3e-32 MNSNTMPLEAETRVLIDRSLENLGWKFKGKDKNVFFEQPRTESERKRLNGKHPDYVLYSK DSDKPLIVIEAKKKGTRIDAALEQGIGYARALEAPLVFATDGVFCKAFHTVANRAPILNG EEVDEFIREALALRYLSSYEVNTVSPKVQYDRRELIRIFDEANNMLRGEGLRAGIERFGE FANILFLKLISESEQIKRESGINTNFENACSWDSIKNIPISTRIEYINKTVYEKLNDLYE TDIFTPLQIRDTSILKEIMDKLDPLTLTDVDSDVKGDAFEYFLKASTSTKNDLGEYFTPR HIVKTMVRLVNPQIGETIYDPFCGTGGFLIESFRHIYNNMARTDANLKMLREKTVYGNEI TNTARITKMNMILAGDGHSNIKMKDSLANPIDGKSTYIDEKGEEHHNGYDIVLANMPYSQ KTKYGNLYDLPSNNGDSICVQHCIKAVDSASENGRIALVVPEGFLFRKDLTKTREYLLEN CQLQSVISLPQGVFLPYTGVKTDIIYATKVNRKISSSEKRKDFWYFDVKSDGYSLDNHRR KLDTPSDLSKYEEYRKLDDDQVEDMLKVGFEVIPLDKVYKNSNILVGSRYRTHTVKKSKS HEMVKLGNIATFIRGISFPKKAQKDQADDLLNVITTRAAQADGIDFKKVVYIEKSYAKPD KMVFKEDILISLANSLELVGRVTYVDENYKDATFGAFMGVIRVNYQKVHPMYLFHILNSI EAKKYFRAVAKTTTNISNITFEDLGNLVLPLPRLDYQLKIIDELNRYQEMIVGAKKIVNN YLPKLPSYEIVVSTSLNDSELFEIMSGGTPSTKNPDYWGGDISWITLADLPQEDYVTTID KSVRTITKKGLDNSSAKMLPVGAIVVSTRATIGRVGIVKHPLATNQGFKNVIIKKPDVVI PEFLALLLKEKTEEMEFLASGATFKEISKFNFGKIKVELPSLDEQKRILVKIHEEESFVK PAKKVIEVFEDKIDTAINKVWGE >gi|281298187|gb|ADDO01000017.1| GENE 38 49221 - 49490 308 89 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282881950|ref|ZP_06290595.1| ## NR: gi|282881950|ref|ZP_06290595.1| putative nucleotidyl transferase [Peptoniphilus lacrimalis 315-B] putative nucleotidyl transferase [Peptoniphilus lacrimalis 315-B] # 1 89 1 89 89 139 100.0 1e-31 MSNFFVNDKFKVLECMEQRQIQVNDESIVKLSQQEIADILGFTKTKVNNIVRELKENGYL TQLSSRGKYILTDIANKEINKMKGEEAKK >gi|281298187|gb|ADDO01000017.1| GENE 39 49618 - 49812 67 64 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0424_0627 NR:ns ## KEGG: HMPREF0424_0627 # Name: not_defined # Def: hypothetical protein # Organism: G.vaginalis # Pathway: not_defined # 1 62 1 62 69 89 83.0 4e-17 MRINLFRHLQWLLSNATNNINQIVKTTNTTGVIYKNDIYYMREKIEKLSKEIWDIHSLLL KRAT >gi|281298187|gb|ADDO01000017.1| GENE 40 50270 - 51124 951 284 aa, chain - ## HITS:1 COG:no KEGG:EUBREC_2672 NR:ns ## KEGG: EUBREC_2672 # Name: not_defined # Def: hypothetical protein # Organism: E.rectale # Pathway: not_defined # 42 283 27 282 287 111 37.0 3e-23 MDGIDRVSLYQSVQSIVDENKDYLYDFISEQFEGSFWINLSKLLKLNIAILDGIEEKFLI NSYNMKIDKIEFNEVYIENLNRFKLENDFIKEKNLSKLESFTETIGKSKDEYYAFNSLIK LLSDINNSIINQPQTNGEYIHNSRLRMDHFAGNKVFLSHAFDDKLYTLSLFIFMLKKGIF LYVDWIFSPNFKNGVDIKNNLAKHLSESRQLLFLRTVNSEFSIRGSGNIRGWCSWELGTF YTLNKMQSDNKYYIELYKGKNNQQNNKQLDGIKPLKDIFSGRLV >gi|281298187|gb|ADDO01000017.1| GENE 41 51158 - 51655 463 165 aa, chain - ## HITS:1 COG:no KEGG:SEQ_0762 NR:ns ## KEGG: SEQ_0762 # Name: not_defined # Def: hypothetical protein # Organism: S.equi_equi # Pathway: not_defined # 1 165 1 165 165 275 90.0 5e-73 MAKRQVFFSFHYDNDNWRAVQVRNMGKVDSSSTFSDNDWEEVKEKTDTKIETWIDEQVNK RSCLVVLIGEKTANRKWINYEIKKAYELNKGIVGIYIHKLENSLGEQDDKCNNPFDYLIL EGKKLSKYVKCFDSVYLSSKNVYSDIKDNIEDLIEYGIEHKPPTW >gi|281298187|gb|ADDO01000017.1| GENE 42 51656 - 53041 924 461 aa, chain - ## HITS:1 COG:no KEGG:SEQ_0761 NR:ns ## KEGG: SEQ_0761 # Name: not_defined # Def: hypothetical protein # Organism: S.equi_equi # Pathway: not_defined # 1 461 13 473 473 846 92.0 0 MIREIEKAIKSDELGAFIGAGLSIPAGFSSWKELLREPAEEIGLDVEKENDLVNLAQYYS NSKNRTSIDDLIKERFSQLAKPTENHKLLSQLPISTFWTTNYDKLIEKALENNMKKPYVK IKDEHLRGTNHNFDAIVYKLHGDVEAPEDAVITRSDYEEFGYNKRKLFREVLEGDLLTKT FLFLGFSFEDPNFNYVIGRLRVLLDEKNTRKHYCIMKRIQDTDEDYEYKKVRQELQIEDL NRYGIFTYLVNKYDEITEILSTLVDRFRRKTIFISGSAYSYSTYSQKIGENFIHKLSFEL SKNGYHIVNGYGKGVGEFVLNGVADYCLAHKSKINDFLTLMPFPQNSSLGIDLDKLYKEN REQMIENCGIAIFIFGNKETEDIAHGVMDEFELCKKHGLVCLPIEHTGGAAKEIYNQTTQ EITDENIITAIGQANNQCHGDIDMSIKNIVQAVKILNKEEF >gi|281298187|gb|ADDO01000017.1| GENE 43 53179 - 53364 218 61 aa, chain - ## HITS:1 COG:no KEGG:SEQ_0758 NR:ns ## KEGG: SEQ_0758 # Name: not_defined # Def: type II restriction enzyme # Organism: S.equi_equi # Pathway: not_defined # 1 61 215 275 301 109 95.0 4e-23 MSDVVLYSEDKNWIYFIESVTSVGAMELKRIKEIEEMTENVSAGKIYVTAFLDFKTFKKF S >gi|281298187|gb|ADDO01000017.1| GENE 44 53398 - 53568 62 56 aa, chain - ## HITS:1 COG:no KEGG:SEQ_0758 NR:ns ## KEGG: SEQ_0758 # Name: not_defined # Def: type II restriction enzyme # Organism: S.equi_equi # Pathway: not_defined # 1 56 147 202 301 105 94.0 8e-22 MPVKINGDNFTFSPGKHNQLQKLIIEEFAPRFAENSERLYVGDTIQKDLVKNEEKL >gi|281298187|gb|ADDO01000017.1| GENE 45 53693 - 53821 94 42 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKSHMQRIVEKHSLSRQCIILEMRCLLRIMVKQQIVLIIGIV >gi|281298187|gb|ADDO01000017.1| GENE 46 53883 - 54005 208 40 aa, chain - ## HITS:1 COG:no KEGG:SEQ_0758 NR:ns ## KEGG: SEQ_0758 # Name: not_defined # Def: type II restriction enzyme # Organism: S.equi_equi # Pathway: not_defined # 1 40 1 40 301 79 100.0 5e-14 MSKLEEAKNILNELKVPPKQQSDLCGYVILAMADIKKNDE >gi|281298187|gb|ADDO01000017.1| GENE 47 53998 - 54189 190 63 aa, chain - ## HITS:1 COG:no KEGG:SEQ_0757 NR:ns ## KEGG: SEQ_0757 # Name: not_defined # Def: modification methylase # Organism: S.equi_equi # Pathway: not_defined # 1 63 436 498 498 124 95.0 1e-27 MNSTLYDNYYRILNGSTQVNATEINSMPIPPLTCIENMGKELIKLNDMSEENCDEILGRF IYV >gi|281298187|gb|ADDO01000017.1| GENE 48 54196 - 54354 99 52 aa, chain - ## HITS:1 COG:no KEGG:SEQ_0757 NR:ns ## KEGG: SEQ_0757 # Name: not_defined # Def: modification methylase # Organism: S.equi_equi # Pathway: not_defined # 1 52 381 432 498 102 92.0 7e-21 MKRFTVKEEKRRLQCGIYLAYKFPTYKAISAQNKINFITGLQGLSDCLVYGL >gi|281298187|gb|ADDO01000017.1| GENE 49 54450 - 54818 380 122 aa, chain - ## HITS:1 COG:no KEGG:SEQ_0757 NR:ns ## KEGG: SEQ_0757 # Name: not_defined # Def: modification methylase # Organism: S.equi_equi # Pathway: not_defined # 1 118 226 343 498 181 85.0 1e-44 MSRDKVFDKEAVLQETIIIKAKKESNMPKNITITTTNANFDFYSKTVFEALYDMVVSGEH KYVFLITDKEEADTIKKVNERNDTLPTLGLIIKTGLTVDFRNREALRNDAEEKQFLYFIR NI >gi|281298187|gb|ADDO01000017.1| GENE 50 54846 - 54959 104 37 aa, chain - ## HITS:1 COG:no KEGG:SEQ_0757 NR:ns ## KEGG: SEQ_0757 # Name: not_defined # Def: modification methylase # Organism: S.equi_equi # Pathway: not_defined # 1 36 179 214 498 72 91.0 8e-12 MEMASFNLVDNGELVFIVTRSWTSGTYFRKFREKFLR >gi|281298187|gb|ADDO01000017.1| GENE 51 54972 - 55100 181 42 aa, chain - ## HITS:1 COG:no KEGG:SEQ_0757 NR:ns ## KEGG: SEQ_0757 # Name: not_defined # Def: modification methylase # Organism: S.equi_equi # Pathway: not_defined # 1 41 132 172 498 78 80.0 9e-14 MLCACTEPEKYDVIIGNPPYSKIGKTANEALSMPDICYGAPK >gi|281298187|gb|ADDO01000017.1| GENE 52 55170 - 55316 164 48 aa, chain - ## HITS:1 COG:no KEGG:SEQ_0757 NR:ns ## KEGG: SEQ_0757 # Name: not_defined # Def: modification methylase # Organism: S.equi_equi # Pathway: not_defined # 3 48 62 107 498 74 80.0 1e-12 MVSGILTAALVQRIIDTDKIKTIKITCYETDGDILELLNKNLLWIRDN >gi|281298187|gb|ADDO01000017.1| GENE 53 55503 - 55595 68 30 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MPQSGSPVAVNNISVISLYASVLVVVLGLF >gi|281298187|gb|ADDO01000017.1| GENE 54 55761 - 56651 856 296 aa, chain - ## HITS:1 COG:no KEGG:Rru_A2187 NR:ns ## KEGG: Rru_A2187 # Name: not_defined # Def: serine/threonine protein kinase (EC:2.7.11.17) # Organism: R.rubrum # Pathway: not_defined # 1 154 138 291 445 93 36.0 1e-17 MFLTDFGICYLDKEKERLTEIEIAVGPRMFIAPEYERGRIGNVDSKGDIFSIGKVIWYMI NGVENDFLPSNFWFVDEYNLVKKFDNNEDIIFANNIISICLSINPEERPDYDNLINLIEN FLKETKIDNDEKLKFEVRQYNEKRKIDLKEIREKNALLVNTFSICFVKALEKLNNFYNLD LISTILLEYKSKSKNGVDYTSINMEHNSAHYLYSRSFDRIYISINYNPANDNEKYCNVDI NYHIYSKNTISKLFRIFYKEDGELYSEFKNEIKLFSEKVVLCWGEDLISEYVRSYV >gi|281298187|gb|ADDO01000017.1| GENE 55 56664 - 57065 503 133 aa, chain - ## HITS:1 COG:no KEGG:Rru_A2187 NR:ns ## KEGG: Rru_A2187 # Name: not_defined # Def: serine/threonine protein kinase (EC:2.7.11.17) # Organism: R.rubrum # Pathway: not_defined # 1 129 1 128 445 83 36.0 2e-15 MKVKPDKQGGNSDIYFIEDLKARKYLRNTSSKEKIERFKVELEIMGLFKDKHVDGIINVY DVFVDSNDIKKSYIEMKKYDGNINGLLCYTKGDVRKTLELCLPILRALNKISKFKNPIYH RDIKPDNILYEKD >gi|281298187|gb|ADDO01000017.1| GENE 56 57449 - 58294 737 281 aa, chain - ## HITS:1 COG:no KEGG:Apre_0343 NR:ns ## KEGG: Apre_0343 # Name: not_defined # Def: KilA domain-containing protein # Organism: A.prevotii # Pathway: not_defined # 1 277 1 277 279 479 94.0 1e-134 MSKIKKEKISVKGFDIEVYTEDFKNDYISLTDIAKYKNKEEPNVVVSNWMRNYNTIEYLG IWEQLNNPDFNPLEFEGYLKEAGSNAFTLSPQKWQKTTNAVGLFVKLGRYGGTYAHKDIA FKFASWISAEFELYIIKDYQRLKEDENSKLSLTWNLHREISKINYKIHTDAIKEYLLKDL TDEQLSFKYASEADMLNVALFDKRAKQWREENPDLKGNMRDYASLNELLVLANMESYNAI LIGKGMEQKERMMELRKLARTQLMSLKKLGESDIKKLEGKK >gi|281298187|gb|ADDO01000017.1| GENE 57 58564 - 58674 95 36 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKKYENHNWIFEETFRSYRKQINNATIKCRFECRFE >gi|281298187|gb|ADDO01000017.1| GENE 58 58930 - 59088 156 52 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLKNKLESHACNMLAKNQMNRNKMDNKAKTDIKNIDFMPFIQNDMNGHIEWE >gi|281298187|gb|ADDO01000017.1| GENE 59 59075 - 61522 2404 815 aa, chain - ## HITS:1 COG:TVN0814 KEGG:ns NR:ns ## COG: TVN0814 COG1204 # Protein_GI_number: 13541645 # Func_class: R General function prediction only # Function: Superfamily II helicase # Organism: Thermoplasma volcanium # 89 475 4 364 674 70 25.0 2e-11 MDKLTLRKLYNTEFPALYKKLQIGIELSDEELEKILSIGIFLTGLDNKNLQRLGYRLFLL YSKITDDYKPLYELSLNKGLIPISKFIENNLNYSERYGNIYTEINSIESDEFKWNNSYQT IGQFELFKEAKESKLKSQIIVAPTSYGKTELILSYIDHTKFKKICIISPTKSLLAQTKKR IINKFGYRKIITYPEMYSDKDNEIIAVLTQERLLRLLQNNPNLKFDLLVIDEAHNILDDF SDENRRSVILASVIIICKKRKENLVCKYLTPFLRSKESLKIECLPNVDEWYSVVENVKSE IFYFYDLENNKKVLLDQYSTTKDKLIDLQVNELGDDEDVVITNCDNKNIIYLNSPKKLEN FAFKLFSKLPERQILRLNKAASDLREYVHEDYKLADYIEKGVIYHHGSIPEPVRYFIEDL YVDVPEIKMLIANSTLLEGVNIPATKMFILDPCRGNSYLSPSSFKNLIGRVCRFGEIFNN STGDLKYLLPEIHIVKGGYCRQNFKVENFVKGRKILVEDYDKIVDDIKNPLLVNSDSDKA KKKKAEDILENISHSDSITVNNSNKAKTKVGQLCFENNINIFNILEIEKQIDNEIENVNI AQSIDTVFNIIDYLFFSKINDSNGEYNNLKRLREHEAQSFYKMLINWRIMGFTMKVMTDE MVGYWNTLREEQSRIVYVGKWGDKTRGGHREYWTDITEKDEYEKVNLAIVRLKEEYDFID NEIVKYIEVLYSLELIEESLYLKIKYGTDDKTKIALLNCGISSILSKLLQEKYADMFEAD IGNSTVTFSKNLISEMLKNSENGILISEVKMNAKE >gi|281298187|gb|ADDO01000017.1| GENE 60 61533 - 62300 576 255 aa, chain - ## HITS:1 COG:no KEGG:SGO_0555 NR:ns ## KEGG: SGO_0555 # Name: not_defined # Def: hypothetical protein # Organism: S.gordonii # Pathway: not_defined # 6 255 7 258 283 223 49.0 7e-57 MNDVIERKIGESIILEIHNLGDELKDKIKEQLVEICHGEYALVSGLNYHSFDETVKELVN HRIPSNINRKVGVIGELLLNVMIREFTDIKIVSPFFNLEERHVKKGFDIIAVDSNKDLWI IESKAGELGKLKTSTEKACERINAAKRDLNTRLNMHNSQLWLNAVNSVRSALDDTSEKNT IVNILNKNSSSCLSNDKNVILGGIVFCIFNSTIDSIELRKLHDSILSSNKFSKLKLIAIQ KQTYQAIIDFLVTLV >gi|281298187|gb|ADDO01000017.1| GENE 61 62322 - 64304 1431 660 aa, chain - ## HITS:1 COG:no KEGG:SOR_0978 NR:ns ## KEGG: SOR_0978 # Name: not_defined # Def: AlwI restriction endonuclease family protein # Organism: S.oralis # Pathway: not_defined # 1 660 1 660 660 1007 79.0 0 MANINIPYQSFCWVVGTTSFRTAKLNLKIEAQLLLLDEFYNEVIKKSSWNWNNELQEKYY DFMKSKAFLTGDAKRKDKDAREKTSGLVDIGLITEDRLITEAGRELLKITSSGIFETDNA FNINRDSFVYLKQLLKTSIDVSGKIVRPFIAVVKCLTELEFLSYDEFTYFVPLIKDDESA EQIISDIKLYREGKIKLEEIIYKRLMQMDNYRLAQEEFIASDVDENLICLIGMNRKSRSY DKPYYKLYQSIKNIFIDGKSDYELLLNSAKNINQKTGILWRNLIFKTTNIGVIRKNGKTS INNQCPFLNCANEKELKEVFFKYLHVFKAMATLSDYFDLNRRYFNVTDTLIFEDRMVKLD MIPKYYFKEIIDVLYKETFSRDDNLSIDVPLETISKAFELDMSKVYAALSKDLGITIRSP EQAATYVNDERYRRFNTLIDKKFNDSVLVELLNCFEKRDDKRIEELVTDEAAIPTIFEYI LGIIWYKVSERQGNILDFMKLSLEANLLPKTHAAGGYADIIYEYEACTSYPKHSLLLEAT LADGTNQRRMEMEPVSRHLGDYRIRFNNPFDYSLFVSTYLDKNVISDFRYRKIIPYTRDE ETITGMKIISMDTDSLKKIIENKVKYKYLYEVFDKYHEMPLETVDWHDGMIKEATEEYKS >gi|281298187|gb|ADDO01000017.1| GENE 62 64305 - 66473 1545 722 aa, chain - ## HITS:1 COG:FN1923_2 KEGG:ns NR:ns ## COG: FN1923_2 COG0338 # Protein_GI_number: 19705228 # Func_class: L Replication, recombination and repair # Function: Site-specific DNA methylase # Organism: Fusobacterium nucleatum # 417 718 1 302 304 369 66.0 1e-102 MASLNVTDVIKELDISKSYLYKLIDKENILIPRSETGRYFWNEDTVKTIKRFLHIDGLQD NNGTEYLISKLGLKQSFINNRRYLGNKYSLSDFIRKTVDENCKGINIVIDIFSGTGAVSN TFKDKMLITNDLLYSNYISNYAWFGYENYSDKKIIELIYEYNQIKTKEKNYMRENFADTF FSADDCSKIGYIREDIEIKYKNKEINFKEYAILITSLLYAMDKIANTVGHYDAYRKNVDF EKPLVLNVLLPKKTINSNNVCYNLDANELIKNIKGDLLYLDPPYNSRQYCDAYHLLENVA RWEKPKVYGIARKMDRTSLKSDYCMVAATKAFGELIENADTKYILLSYNNMSDKGNDRSN AKISDEDIMKILSKKGKVTVFESDYKSFSTGKSDIQDNKERLFLCEVFSKGKKKMNISCP FNYIGGKFKLLEQLQPLFSEKGVFLDLFAGGGNVGINSSSSKVIFNDSNEKLIDSIKFIK DTDTDVLLKQIDNIIEEYHLSNTALYGYSYYDCNSSKGLAGYNKERFLKLRDDFNAKVIA GETDYSMLYVLMVFSFNNQIRFNRKGLFNLPVGKRDFNSKMRSKLVLFSEELKSKDIQFL KKDFRDISLDDFSQETFIYCDPPYLITNATYNENGMWTDLDEKALLEFLDQANEKGFSFA LSNVLESKNKRNDILYNWIKSKGYYCNYLNKSYSNSNYHRKDKNSISEEVLITNYSVDWR NE >gi|281298187|gb|ADDO01000017.1| GENE 63 66654 - 66998 80 114 aa, chain - ## HITS:1 COG:no KEGG:SOR_0976 NR:ns ## KEGG: SOR_0976 # Name: not_defined # Def: hypothetical protein # Organism: S.oralis # Pathway: not_defined # 52 113 38 99 111 69 69.0 4e-11 MMMNKKDLEAYQKSYDEIDIFLKQFPHLRHVMLVEMKKKSGKNLFRKLNKHSKELQARQE KIAKKHNSLSAQYEELEHLKNNMNEYLGIDKREKKESFIGAIKKYKRKIDKTVG >gi|281298187|gb|ADDO01000017.1| GENE 64 67035 - 67181 216 48 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|307243981|ref|ZP_07526102.1| ## NR: gi|307243981|ref|ZP_07526102.1| conserved hypothetical protein [Peptostreptococcus stomatis DSM 17678] conserved hypothetical protein [Peptostreptococcus stomatis DSM 17678] # 1 48 154 201 229 66 89.0 8e-10 MEELERGISRISIEKNELKREFDKLSLEQNRIKEVAKNIQICISKREH Prediction of potential genes in microbial genomes Time: Mon Jul 18 12:05:40 2011 Seq name: gi|281298186|gb|ADDO01000018.1| Peptoniphilus lacrimalis 315-B contig00078, whole genome shotgun sequence Length of sequence - 258 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Mon Jul 18 12:05:42 2011 Seq name: gi|281298180|gb|ADDO01000019.1| Peptoniphilus lacrimalis 315-B contig00077, whole genome shotgun sequence Length of sequence - 5986 bp Number of predicted genes - 6, with homology - 5 Number of transcription units - 3, operones - 2 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 206 - 259 11.9 1 1 Op 1 . - CDS 264 - 1286 810 ## Clole_3609 hypothetical protein 2 1 Op 2 . - CDS 1299 - 2747 722 ## COG1696 Predicted membrane protein involved in D-alanine export - Prom 2777 - 2836 14.5 + Prom 2647 - 2706 9.3 3 2 Op 1 2/0.000 + CDS 2891 - 4039 1235 ## COG1840 ABC-type Fe3+ transport system, periplasmic component 4 2 Op 2 4/0.000 + CDS 4054 - 4737 661 ## COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase 5 2 Op 3 . + CDS 4742 - 5713 1110 ## COG1136 ABC-type antimicrobial peptide transport system, ATPase component + Term 5715 - 5768 10.3 - Term 5703 - 5754 11.2 6 3 Tu 1 . - CDS 5882 - 5986 69 ## Predicted protein(s) >gi|281298180|gb|ADDO01000019.1| GENE 1 264 - 1286 810 340 aa, chain - ## HITS:1 COG:no KEGG:Clole_3609 NR:ns ## KEGG: Clole_3609 # Name: not_defined # Def: hypothetical protein # Organism: C.lentocellum # Pathway: not_defined # 27 313 25 306 483 160 35.0 9e-38 MKKIKRICLSLIFVSIFLTGLVELNNIFMRKSLAKPWDMGNKIGGYFNEKDDFDIFFLGT SHSYCSFNPLLIYENTGFKSYVLASQLQPFKATYYYLKEVLKRDQPKIIFVDIQALIFSI KEDDAIIHSYLDYLPMSMNKLMMILKIVPNKYKAQNLLPLIKYHSRWDELKKEDFNITRK DYKDYLKGYVLLKNSSQAFKDNKNINAEILKHIEQAMDDEYVKTNLKYLNKMIHECQKNN IKLIFVKTPISDDKCFKNNINFWEKKFEKLSVDFVDFNEYKSQMNLTDDDFYDFYHLNSK GAEKFNKFFINYMFKNGFYTDTSSLDKNWLKDLKTYNINK >gi|281298180|gb|ADDO01000019.1| GENE 2 1299 - 2747 722 482 aa, chain - ## HITS:1 COG:PA3548 KEGG:ns NR:ns ## COG: PA3548 COG1696 # Protein_GI_number: 15598744 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted membrane protein involved in D-alanine export # Organism: Pseudomonas aeruginosa # 18 434 19 427 520 254 34.0 3e-67 MLFNSLTYLLFLPSVVIIFFLLPRKAKKIFLLLASLFFYSCWNVKYTFLMVFSIVITYLT GIYLDKHIDDKRKKKKAVFICFAINLGILFFFKYFNFALNSLNDIIAIFHIHSVGRYLNF LLPVGISFYTFQALGYTIDVYRKDIKAEKNFINYALFVSFFPQLVAGPIERSDNLLPQIK SKKIFSYENLVRGLSLITWGYFLKLVIADRAAILVNSAFNSIENYSSSMLILAAILFTVQ IYCDFYSYSIIAKGSAKILDIDLMDNFKEPFFSKSITEFWRRWHISLSSWFKDYLYIPLG GNRKGKLRQYFNFFIVFSVSGLWHGADMSFVVWGIIHGILIIIENISGILKKKSNFFFDL LRRILCFLFVVFAFIFFRAKNIKEAIIFIKNLFAFNLSWHLFFKDIEKSNFGYNNLAVLG ISLFILFLVDLIKYNKIDPLKILQKVFLPLRWVLYFIIIFSILIFGIYGPGFSESQFIYF QF >gi|281298180|gb|ADDO01000019.1| GENE 3 2891 - 4039 1235 382 aa, chain + ## HITS:1 COG:FN0128 KEGG:ns NR:ns ## COG: FN0128 COG1840 # Protein_GI_number: 19703473 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+ transport system, periplasmic component # Organism: Fusobacterium nucleatum # 83 365 5 292 314 209 38.0 7e-54 MDINQTVYKLCTQNKDLRDFLISKGFNNLSSDAMFNTMAKMIKLKDALKLKNIDAEIFQE EYKSFSSKVIENENFENKDSKYTIEGAVPCPIRVPLMESLKDFSTGKDIDIDFDLRSANL GMDFVFDKFKNKEKLPDLITTAGFELILDDKIYEEVKKSYTDCNIPINDDFIKRGVDLKD PEGIFHILGIVPAVFIVNKELLGSRKMPNSWEDLLSGEFENSITIPVADLDMYNAILITI YAKFGLDGVKKLKDGFFSKLHPAQMVKADRNNAACISICPYFFATMISSDSLKLVWPKEG AVISPIFMTAKKESLKNVKDAIDYFTSKKVGQIFSFNGKFPSTVVGIDNNLSEDQKFLWA GWELLNNKREKLKSQISQYFDL >gi|281298180|gb|ADDO01000019.1| GENE 4 4054 - 4737 661 227 aa, chain + ## HITS:1 COG:FN0129 KEGG:ns NR:ns ## COG: FN0129 COG0378 # Protein_GI_number: 19703474 # Func_class: O Posttranslational modification, protein turnover, chaperones; K Transcription # Function: Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase # Organism: Fusobacterium nucleatum # 1 226 1 226 231 330 68.0 2e-90 MRFITFSGPPSSGKSSVIINTIKNLKKDGIKVGVVKFDCLYTDDDILYKNAGILVKKGLS GALCPDHFFVSNIEEILNWAKENSLDILITESAGLCNRCSPYLKNILGICVIDNLSGVNT PMKIGPMLRNADIVVITKGDIVSQGEREVFSSRVLAVNPRAIVMNINGLSGQGSLELSMI LKEKSKDLKEQENLILRYPMPTALCSYCLGETRVGEKYQLGNVKKIR >gi|281298180|gb|ADDO01000019.1| GENE 5 4742 - 5713 1110 323 aa, chain + ## HITS:1 COG:FN0130 KEGG:ns NR:ns ## COG: FN0130 COG1136 # Protein_GI_number: 19703475 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, ATPase component # Organism: Fusobacterium nucleatum # 69 321 6 259 268 295 62.0 7e-80 MKISEILEKYPFAQAYFENNKLDIEGKEAEDFDYFLKNISDEKLEELATDRKALKDGLKS FIDSMMEFLSDNQIQSITILPGKDKDGNKENFEELVLKKSDVFSIVGPTGAGKSRLLSDI DWLAQGDTPTGRKILVNGQKPNSTMRFSTQDKIVAELSQNMNFVMDLTVREFIELHSKSR LIDPKEKIKKIIEDANNLAGEKFSLDTNITELSGGQSRALMISDTANLSKSPIVLIDEIE NAGIDRKKAVELLMSQDKIVIISTHDPSLALMADKRIVIKNGGIYKIIETSENERKILNK LEGIDEYLETLRNNLRNGQKING >gi|281298180|gb|ADDO01000019.1| GENE 6 5882 - 5986 69 34 aa, chain - ## HITS:0 COG:no KEGG:no NR:no VKSEICLLSIGLNVNKLTSKIENNNIEIIKYKVA Prediction of potential genes in microbial genomes Time: Mon Jul 18 12:05:53 2011 Seq name: gi|281298177|gb|ADDO01000020.1| Peptoniphilus lacrimalis 315-B contig00065, whole genome shotgun sequence Length of sequence - 985 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 28 - 276 130 ## PROTEIN SUPPORTED gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase 2 1 Op 2 . - CDS 258 - 977 209 ## PROTEIN SUPPORTED gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase Predicted protein(s) >gi|281298177|gb|ADDO01000020.1| GENE 1 28 - 276 130 82 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae SP6-BS73] # 1 79 239 316 317 54 33 1e-27 SEFEKIEKELGCKTYFCDPYCAWQKGTNENSNGLLREFYPKGMDLSEVNIDDLNINLKLM NNRPRKCIKYKTPKEELFGFLP >gi|281298177|gb|ADDO01000020.1| GENE 2 258 - 977 209 239 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae SP6-BS73] # 1 230 20 238 317 85 30 1e-27 IYQFLNLGMSLREIAQALRRSPSTISREIKRNSSKIKGNEESYTKYFPIKANDKYLDRRK DCHRKSKFSKDVIDYLTIKISEHWSPEQISNRSTNVIKQVPSTSTIYRLIHAKKLPKTSM EKLRRKGKFKRPAEKRGKFNDKGRTIKKRPKEIYTRQELGHWEADTVESGRLDHKRKSGY CFVTLAERKSRYYIAILVENRKSENVTPAIINVLKNLPKELVKTITFDRGKRNFQNLRK Prediction of potential genes in microbial genomes Time: Mon Jul 18 12:06:57 2011 Seq name: gi|281298008|gb|ADDO01000021.1| Peptoniphilus lacrimalis 315-B contig00029, whole genome shotgun sequence Length of sequence - 190027 bp Number of predicted genes - 170, with homology - 167 Number of transcription units - 39, operones - 27 average op.length - 5.9 N Tu/Op Conserved S Start End Score pairs(N/Pv) + TRNA 6 - 80 75.0 # Glu TTC 0 0 + TRNA 87 - 162 88.9 # Val TAC 0 0 + TRNA 216 - 292 87.0 # Asp GTC 0 0 + TRNA 374 - 449 88.0 # Thr CGT 0 0 + TRNA 463 - 538 92.8 # Thr TGT 0 0 + TRNA 597 - 671 92.3 # Gly GCC 0 0 + TRNA 684 - 760 80.3 # Arg ACG 0 0 + TRNA 801 - 887 53.6 # Leu GAG 0 0 + TRNA 908 - 994 77.7 # Leu CAA 0 0 2 1 Op 2 . + CDS 3896 - 4495 566 ## COG0237 Dephospho-CoA kinase 3 1 Op 3 . + CDS 4492 - 5244 385 ## COG1408 Predicted phosphohydrolases 4 1 Op 4 . + CDS 5312 - 7108 1683 ## COG0608 Single-stranded DNA-specific exonuclease 5 1 Op 5 7/0.000 + CDS 7086 - 9221 2290 ## COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases 6 1 Op 6 1/0.091 + CDS 9226 - 9675 687 ## COG1490 D-Tyr-tRNAtyr deacylase 7 1 Op 7 1/0.091 + CDS 9677 - 10303 751 ## COG0491 Zn-dependent hydrolases, including glyoxylases 8 1 Op 8 . + CDS 10300 - 11676 854 ## COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases 9 1 Op 9 . + CDS 11678 - 13207 1535 ## COG0769 UDP-N-acetylmuramyl tripeptide synthase + Term 13305 - 13334 2.1 + Prom 13229 - 13288 5.2 10 2 Op 1 . + CDS 13342 - 15111 2290 ## COG0173 Aspartyl-tRNA synthetase 11 2 Op 2 . + CDS 15123 - 15551 431 ## Clos_1060 positive regulator of sigma E, RseC/MucC 12 2 Op 3 . + CDS 15559 - 16350 558 ## gi|300814715|ref|ZP_07094965.1| hypothetical protein HMPREF9131_1002 13 2 Op 4 . + CDS 16353 - 17336 797 ## gi|282882125|ref|ZP_06290766.1| putative hemagglutination activity domain-containing protein + Term 17344 - 17396 9.0 + Prom 17362 - 17421 9.1 14 3 Tu 1 . + CDS 17508 - 18671 1081 ## COG1916 Uncharacterized homolog of PrgY (pheromone shutdown protein) 15 4 Op 1 12/0.000 - CDS 18666 - 19133 531 ## COG3610 Uncharacterized conserved protein 16 4 Op 2 . - CDS 19130 - 19909 858 ## COG2966 Uncharacterized conserved protein - Prom 19947 - 20006 7.5 + Prom 19899 - 19958 7.3 17 5 Op 1 2/0.000 + CDS 20043 - 21362 1611 ## COG1160 Predicted GTPases 18 5 Op 2 1/0.091 + CDS 21359 - 21949 431 ## COG0344 Predicted membrane protein 19 5 Op 3 . + CDS 21946 - 22953 1067 ## COG0240 Glycerol-3-phosphate dehydrogenase 20 5 Op 4 . + CDS 23016 - 24260 1152 ## Clos_1406 hypothetical protein 21 5 Op 5 14/0.000 + CDS 24274 - 24960 712 ## COG0325 Predicted enzyme with a TIM-barrel fold 22 5 Op 6 . + CDS 24975 - 25424 530 ## COG1799 Uncharacterized protein conserved in bacteria 23 5 Op 7 . + CDS 25418 - 26194 234 ## PROTEIN SUPPORTED gi|49483354|ref|YP_040578.1| hypothetical protein SAR1167 24 5 Op 8 15/0.000 + CDS 26205 - 26663 374 ## COG0597 Lipoprotein signal peptidase 25 5 Op 9 . + CDS 26663 - 27550 929 ## COG0564 Pseudouridylate synthases, 23S RNA-specific + Term 27648 - 27688 5.2 - Term 27632 - 27680 4.0 26 6 Op 1 . - CDS 27702 - 28223 604 ## COG0622 Predicted phosphoesterase 27 6 Op 2 . - CDS 28224 - 28355 124 ## 28 6 Op 3 . - CDS 28360 - 29475 1146 ## COG1883 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit - Prom 29724 - 29783 9.2 + Prom 29572 - 29631 14.8 29 7 Op 1 . + CDS 29801 - 31513 2122 ## COG1288 Predicted membrane protein 30 7 Op 2 . + CDS 31523 - 32719 1471 ## HMPREF9243_1818 beta-aspartyl peptidase (EC:3.4.19.5) + Term 32735 - 32775 6.0 + Prom 32726 - 32785 7.8 31 8 Op 1 2/0.000 + CDS 32875 - 33801 1016 ## COG2066 Glutaminase 32 8 Op 2 1/0.091 + CDS 33820 - 34494 383 ## PROTEIN SUPPORTED gi|145629959|ref|ZP_01785741.1| 50S ribosomal protein L21 33 8 Op 3 . + CDS 34413 - 35234 358 ## PROTEIN SUPPORTED gi|145632256|ref|ZP_01787991.1| 50S ribosomal protein L27 + Term 35250 - 35282 4.0 + Prom 35236 - 35295 13.4 34 9 Op 1 . + CDS 35340 - 35906 588 ## COG1896 Predicted hydrolases of HD superfamily 35 9 Op 2 . + CDS 35918 - 37294 1167 ## COG2509 Uncharacterized FAD-dependent dehydrogenases + Term 37302 - 37337 3.1 36 10 Op 1 1/0.091 + CDS 37363 - 38778 419 ## PROTEIN SUPPORTED gi|227412248|ref|ZP_03895446.1| SSU ribosomal protein S12P methylthiotransferase 37 10 Op 2 6/0.000 + CDS 38771 - 41371 2346 ## COG0249 Mismatch repair ATPase (MutS family) 38 10 Op 3 12/0.000 + CDS 41372 - 43261 1658 ## COG0323 DNA mismatch repair enzyme (predicted ATPase) 39 10 Op 4 . + CDS 43263 - 44171 944 ## COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase 40 10 Op 5 . + CDS 44164 - 45453 1133 ## COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance + Term 45502 - 45549 10.4 - Term 45487 - 45539 5.6 41 11 Tu 1 . - CDS 45552 - 46169 762 ## COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases) - Prom 46190 - 46249 12.7 + Prom 46229 - 46288 9.1 42 12 Tu 1 . + CDS 46389 - 46706 272 ## gi|282882127|ref|ZP_06290768.1| peptidoglycan-binding LysM + Term 46712 - 46748 3.5 + Prom 46745 - 46804 8.6 43 13 Op 1 . + CDS 46882 - 48417 2218 ## COG1418 Predicted HD superfamily hydrolase + Term 48424 - 48454 1.2 44 13 Op 2 . + CDS 48459 - 49439 982 ## COG0582 Integrase 45 13 Op 3 . + CDS 49439 - 50092 710 ## Nther_1020 copper amine oxidase domain protein - Term 50948 - 50988 7.2 46 14 Tu 1 . - CDS 50994 - 52232 1592 ## COG0112 Glycine/serine hydroxymethyltransferase - Prom 52264 - 52323 11.4 + Prom 52243 - 52302 6.9 47 15 Tu 1 . + CDS 52336 - 54090 1445 ## COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP + Term 54105 - 54152 10.5 - Term 54100 - 54133 2.3 48 16 Tu 1 . - CDS 54160 - 54480 411 ## COG4496 Uncharacterized protein conserved in bacteria - Prom 54549 - 54608 6.7 49 17 Op 1 . - CDS 54627 - 55283 634 ## Cthe_1092 hypothetical protein 50 17 Op 2 . - CDS 55285 - 55518 399 ## gi|282882005|ref|ZP_06290646.1| conserved hypothetical protein 51 17 Op 3 . - CDS 55519 - 56967 1497 ## Cthe_0944 SMC protein-like protein 52 17 Op 4 1/0.091 - CDS 56964 - 57941 886 ## COG0420 DNA repair exonuclease 53 17 Op 5 5/0.000 - CDS 57972 - 59003 1639 ## COG0468 RecA/RadA recombinase 54 17 Op 6 4/0.000 - CDS 59012 - 60238 223 ## PROTEIN SUPPORTED gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase 55 17 Op 7 2/0.000 - CDS 60247 - 60780 339 ## PROTEIN SUPPORTED gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase 56 17 Op 8 1/0.091 - CDS 60777 - 62090 926 ## PROTEIN SUPPORTED gi|228000795|ref|ZP_04047796.1| SSU ribosomal protein S12P methylthiotransferase 57 17 Op 9 . - CDS 62083 - 64416 2419 ## COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins 58 17 Op 10 2/0.000 - CDS 64465 - 64923 523 ## COG0756 dUTPase 59 17 Op 11 26/0.000 - CDS 64948 - 67098 1580 ## PROTEIN SUPPORTED gi|62291006|ref|YP_222799.1| polynucleotide phosphorylase/polyadenylase - Term 67126 - 67154 1.4 60 17 Op 12 . - CDS 67158 - 67424 334 ## PROTEIN SUPPORTED gi|227901261|ref|ZP_04019066.1| ribosomal protein S15 61 17 Op 13 . - CDS 67390 - 67566 60 ## 62 17 Op 14 12/0.000 - CDS 67541 - 68449 397 ## PROTEIN SUPPORTED gi|163762565|ref|ZP_02169630.1| ribosomal protein S2 63 17 Op 15 1/0.091 - CDS 68453 - 69346 727 ## COG0130 Pseudouridine synthase 64 17 Op 16 4/0.000 - CDS 69336 - 70334 248 ## PROTEIN SUPPORTED gi|149007035|ref|ZP_01830704.1| 50S ribosomal protein L31 type B 65 17 Op 17 32/0.000 - CDS 70306 - 70662 395 ## COG0858 Ribosome-binding factor A 66 17 Op 18 15/0.000 - CDS 70664 - 72922 2661 ## COG0532 Translation initiation factor 2 (IF-2; GTPase) 67 17 Op 19 22/0.000 - CDS 72953 - 73213 253 ## PROTEIN SUPPORTED gi|206900953|ref|YP_002250931.1| ribosomal protein L7Ae family protein 68 17 Op 20 32/0.000 - CDS 73256 - 74548 781 ## PROTEIN SUPPORTED gi|17988250|ref|NP_540884.1| transcription elongation factor NusA 69 17 Op 21 4/0.000 - CDS 74560 - 75021 512 ## COG0779 Uncharacterized protein conserved in bacteria - Prom 75059 - 75118 3.0 - Term 75028 - 75066 6.1 70 17 Op 22 . - CDS 75122 - 79369 3878 ## COG2176 DNA polymerase III, alpha subunit (gram-positive type) - Term 79376 - 79440 5.5 71 18 Op 1 6/0.000 - CDS 79446 - 80507 1160 ## COG0821 Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis 72 18 Op 2 12/0.000 - CDS 80504 - 81511 844 ## COG0750 Predicted membrane-associated Zn-dependent proteases 1 73 18 Op 3 32/0.000 - CDS 81521 - 82306 577 ## COG0575 CDP-diglyceride synthetase 74 18 Op 4 19/0.000 - CDS 82306 - 83031 775 ## COG0020 Undecaprenyl pyrophosphate synthase - Term 83037 - 83083 6.2 75 18 Op 5 33/0.000 - CDS 83084 - 83641 828 ## COG0233 Ribosome recycling factor 76 18 Op 6 24/0.000 - CDS 83651 - 84355 1032 ## COG0528 Uridylate kinase 77 18 Op 7 38/0.000 - CDS 84364 - 85014 293 ## PROTEIN SUPPORTED gi|42631241|ref|ZP_00156779.1| COG0264: Translation elongation factor Ts - Term 85031 - 85072 7.4 78 18 Op 8 . - CDS 85079 - 85903 964 ## PROTEIN SUPPORTED gi|169824403|ref|YP_001692014.1| 30S ribosomal protein S2 79 18 Op 9 . - CDS 85842 - 86030 207 ## - Prom 86102 - 86161 9.6 - Term 86179 - 86209 2.0 80 19 Op 1 20/0.000 - CDS 86232 - 86420 244 ## PROTEIN SUPPORTED gi|227484646|ref|ZP_03914962.1| ribosomal protein L32 81 19 Op 2 1/0.091 - CDS 86423 - 86953 476 ## COG1399 Predicted metal-binding, possibly nucleic acid-binding protein - Prom 86973 - 87032 7.2 82 19 Op 3 . - CDS 87034 - 88227 1691 ## COG0282 Acetate kinase - Prom 88275 - 88334 9.7 + Prom 88217 - 88276 12.1 83 20 Tu 1 . + CDS 88324 - 89472 1150 ## COG1323 Predicted nucleotidyltransferase + Term 89536 - 89573 -0.2 84 21 Op 1 3/0.000 - CDS 89482 - 89922 832 ## COG3599 Cell division initiation protein 85 21 Op 2 14/0.000 - CDS 89926 - 90405 348 ## PROTEIN SUPPORTED gi|163764798|ref|ZP_02171851.1| ribosomal protein S19 86 21 Op 3 1/0.091 - CDS 90383 - 90952 306 ## PROTEIN SUPPORTED gi|163764797|ref|ZP_02171850.1| ribosomal protein L29 - Prom 90976 - 91035 4.8 87 22 Op 1 4/0.000 - CDS 91039 - 93063 1750 ## COG1200 RecG-like helicase - Term 93071 - 93097 1.0 88 22 Op 2 9/0.000 - CDS 93106 - 94767 1974 ## COG1461 Predicted kinase related to dihydroxyacetone kinase 89 22 Op 3 3/0.000 - CDS 94779 - 95132 453 ## COG1302 Uncharacterized protein conserved in bacteria - Prom 95238 - 95297 13.0 90 23 Tu 1 . - CDS 95312 - 95503 233 ## PROTEIN SUPPORTED gi|229227420|ref|ZP_04352034.1| LSU ribosomal protein L28P - Prom 95523 - 95582 1.5 - Term 95523 - 95561 1.8 91 24 Op 1 6/0.000 - CDS 95584 - 96219 763 ## COG1564 Thiamine pyrophosphokinase 92 24 Op 2 10/0.000 - CDS 96216 - 96860 795 ## COG0036 Pentose-5-phosphate-3-epimerase 93 24 Op 3 7/0.000 - CDS 96860 - 97717 725 ## COG1162 Predicted GTPases 94 24 Op 4 17/0.000 - CDS 97717 - 99753 2241 ## COG0515 Serine/threonine protein kinase 95 24 Op 5 5/0.000 - CDS 99762 - 100487 887 ## COG0631 Serine/threonine protein phosphatase 96 24 Op 6 4/0.000 - CDS 100465 - 101496 635 ## COG0820 Predicted Fe-S-cluster redox enzyme - Prom 101516 - 101575 3.2 97 24 Op 7 2/0.000 - CDS 101577 - 102869 924 ## COG0144 tRNA and rRNA cytosine-C5-methylases 98 24 Op 8 1/0.091 - CDS 102866 - 103555 936 ## COG2738 Predicted Zn-dependent protease 99 24 Op 9 26/0.000 - CDS 103558 - 104478 960 ## COG0223 Methionyl-tRNA formyltransferase 100 24 Op 10 4/0.000 - CDS 104475 - 104975 705 ## COG0242 N-formylmethionyl-tRNA deformylase 101 24 Op 11 5/0.000 - CDS 104987 - 107332 1899 ## COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase 102 24 Op 12 . - CDS 107362 - 108558 1437 ## COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase 103 24 Op 13 . - CDS 108560 - 108850 462 ## Tthe_1530 DNA-directed RNA polymerase, omega subunit 104 24 Op 14 8/0.000 - CDS 108850 - 109467 784 ## COG0194 Guanylate kinase 105 24 Op 15 . - CDS 109487 - 110362 752 ## COG1561 Uncharacterized stress-induced protein 106 24 Op 16 . - CDS 110374 - 112785 2854 ## COG0495 Leucyl-tRNA synthetase 107 24 Op 17 . - CDS 112795 - 114180 1537 ## COG0017 Aspartyl/asparaginyl-tRNA synthetases - Prom 114204 - 114263 7.0 - Term 114263 - 114302 4.0 108 25 Op 1 . - CDS 114310 - 116091 1582 ## COG1164 Oligoendopeptidase F 109 25 Op 2 . - CDS 116107 - 116820 550 ## COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid) 110 25 Op 3 . - CDS 116804 - 116992 208 ## gi|282882021|ref|ZP_06290662.1| putative NADH oxidase 111 25 Op 4 . - CDS 116992 - 117684 736 ## COG0491 Zn-dependent hydrolases, including glyoxylases - TRNA 117870 - 117945 83.6 # Thr GGT 0 0 - Term 117846 - 117910 -0.9 112 26 Op 1 . - CDS 118032 - 118448 209 ## gi|282882117|ref|ZP_06290758.1| putative unspecified toxin/drug ABC transporter ATP-binding and permease protein 113 26 Op 2 32/0.000 - CDS 118474 - 119550 1546 ## COG0216 Protein chain release factor A 114 26 Op 3 . - CDS 119552 - 120382 316 ## PROTEIN SUPPORTED gi|225874212|ref|YP_002755671.1| ribosomal protein L11 methyltransferase - Term 120384 - 120417 2.2 115 26 Op 4 9/0.000 - CDS 120418 - 120621 282 ## PROTEIN SUPPORTED gi|167464107|ref|ZP_02329196.1| 50S ribosomal protein L31 - Prom 120646 - 120705 7.9 116 26 Op 5 1/0.091 - CDS 120728 - 122488 2141 ## COG1158 Transcription termination factor 117 26 Op 6 . - CDS 122500 - 123465 1272 ## COG1494 Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins 118 26 Op 7 . - CDS 123468 - 124121 680 ## COG0176 Transaldolase 119 26 Op 8 19/0.000 - CDS 124124 - 124600 663 ## COG0245 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 120 26 Op 9 . - CDS 124597 - 125298 346 ## PROTEIN SUPPORTED gi|163764767|ref|ZP_02171821.1| ribosomal protein L15 121 26 Op 10 19/0.000 - CDS 125306 - 126745 1562 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 122 26 Op 11 1/0.091 - CDS 126732 - 128000 1157 ## COG0772 Bacterial cell division membrane protein 123 26 Op 12 . - CDS 128012 - 128452 305 ## COG1716 FOG: FHA domain - Prom 128473 - 128532 7.6 + Prom 128358 - 128417 10.2 124 27 Op 1 . + CDS 128632 - 129234 692 ## COG2137 Uncharacterized protein conserved in bacteria 125 27 Op 2 . + CDS 129218 - 129511 398 ## COG2827 Predicted endonuclease containing a URI domain 126 28 Op 1 . - CDS 129512 - 129844 326 ## gi|282882070|ref|ZP_06290711.1| hypothetical protein HMPREF0628_0756 127 28 Op 2 . - CDS 129855 - 131264 1187 ## Dhaf_2195 hypothetical protein 128 28 Op 3 40/0.000 - CDS 131261 - 132667 1316 ## COG0642 Signal transduction histidine kinase 129 28 Op 4 . - CDS 132668 - 133357 986 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 133403 - 133462 9.0 - Term 133383 - 133424 6.3 130 29 Op 1 . - CDS 133531 - 134982 1673 ## COG0516 IMP dehydrogenase/GMP reductase 131 29 Op 2 7/0.000 - CDS 134995 - 136197 1434 ## COG4856 Uncharacterized protein conserved in bacteria 132 29 Op 3 . - CDS 136187 - 137020 844 ## COG1624 Uncharacterized conserved protein 133 29 Op 4 . - CDS 137022 - 137570 247 ## gi|282881983|ref|ZP_06290624.1| conserved hypothetical protein - Prom 137603 - 137662 9.9 - Term 137614 - 137679 4.9 134 30 Op 1 1/0.091 - CDS 137681 - 139870 1521 ## PROTEIN SUPPORTED gi|228002590|ref|ZP_04049584.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; SSU ribosomal protein S1P 135 30 Op 2 3/0.000 - CDS 139839 - 140426 520 ## COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase 136 30 Op 3 1/0.091 - CDS 140430 - 141053 233 ## PROTEIN SUPPORTED gi|15639271|ref|NP_218720.1| bifunctional cytidylate kinase/ribosomal protein S1 137 30 Op 4 . - CDS 141113 - 142300 970 ## COG2081 Predicted flavoproteins 138 30 Op 5 . - CDS 142300 - 142845 526 ## COG0500 SAM-dependent methyltransferases 139 30 Op 6 12/0.000 - CDS 142842 - 143549 831 ## COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases 140 30 Op 7 21/0.000 - CDS 143549 - 144070 533 ## COG1386 Predicted transcriptional regulator containing the HTH domain 141 30 Op 8 . - CDS 144063 - 144788 657 ## COG1354 Uncharacterized conserved protein 142 30 Op 9 . - CDS 144767 - 145411 532 ## COG1994 Zn-dependent proteases 143 30 Op 10 . - CDS 145392 - 146213 1095 ## COG0005 Purine nucleoside phosphorylase 144 30 Op 11 . - CDS 146216 - 146749 711 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 145 30 Op 12 . - CDS 146749 - 148416 1665 ## COG0497 ATPase involved in DNA repair 146 30 Op 13 3/0.000 - CDS 148426 - 149226 651 ## COG1189 Predicted rRNA methylase 147 30 Op 14 . - CDS 149226 - 150095 984 ## COG0142 Geranylgeranyl pyrophosphate synthase 148 30 Op 15 . - CDS 150097 - 150303 415 ## gi|282882031|ref|ZP_06290672.1| exodeoxyribonuclease VII, small subunit 149 30 Op 16 1/0.091 - CDS 150287 - 151891 1352 ## COG1570 Exonuclease VII, large subunit 150 30 Op 17 10/0.000 - CDS 151872 - 152291 446 ## COG0781 Transcription termination factor 151 30 Op 18 . - CDS 152296 - 152679 619 ## COG1302 Uncharacterized protein conserved in bacteria - Prom 152699 - 152758 10.1 152 31 Op 1 1/0.091 - CDS 152786 - 154180 1058 ## PROTEIN SUPPORTED gi|145634045|ref|ZP_01789756.1| 50S ribosomal protein L21 - Prom 154207 - 154266 10.0 153 31 Op 2 . - CDS 154289 - 155695 1122 ## PROTEIN SUPPORTED gi|145632256|ref|ZP_01787991.1| 50S ribosomal protein L27 - Prom 155845 - 155904 11.2 - Term 155884 - 155920 4.2 154 32 Op 1 . - CDS 155929 - 156873 810 ## COG4129 Predicted membrane protein - Prom 156893 - 156952 5.2 155 32 Op 2 8/0.000 - CDS 156954 - 157685 669 ## COG0101 Pseudouridylate synthase 156 32 Op 3 34/0.000 - CDS 157682 - 158479 869 ## COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters 157 32 Op 4 15/0.000 - CDS 158472 - 159335 419 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 158 32 Op 5 . - CDS 159323 - 160156 1032 ## COG1122 ABC-type cobalt transport system, ATPase component - Prom 160209 - 160268 10.2 - Term 160317 - 160372 -0.7 159 33 Op 1 9/0.000 - CDS 160459 - 161085 690 ## COG0461 Orotate phosphoribosyltransferase 160 33 Op 2 . - CDS 161088 - 161789 756 ## COG0284 Orotidine-5'-phosphate decarboxylase 161 33 Op 3 . - CDS 161793 - 162905 1421 ## COG1186 Protein chain release factor B - Prom 163008 - 163067 14.2 + Prom 162878 - 162937 13.8 162 34 Tu 1 . + CDS 163151 - 168880 6031 ## FMG_0048 hypothetical protein + Term 168904 - 168948 2.0 163 35 Op 1 2/0.000 - CDS 169300 - 170553 1392 ## COG0426 Uncharacterized flavoproteins 164 35 Op 2 . - CDS 170563 - 172491 2432 ## COG1960 Acyl-CoA dehydrogenases - Prom 172621 - 172680 8.4 + Prom 172720 - 172779 12.6 165 36 Tu 1 . + CDS 172810 - 173826 1312 ## COG3641 Predicted membrane protein, putative toxin regulator + Term 173832 - 173893 5.5 - Term 173884 - 173926 2.1 166 37 Tu 1 . - CDS 173943 - 174797 1104 ## Dtox_4298 copper amine oxidase domain-containing protein - Prom 174842 - 174901 3.0 - Term 174816 - 174857 -0.4 167 38 Tu 1 . - CDS 174913 - 177309 2317 ## Pjdr2_4319 cellulosome anchoring protein cohesin region - Term 177326 - 177353 0.1 168 39 Op 1 . - CDS 177367 - 181224 4615 ## gi|282882044|ref|ZP_06290685.1| hypothetical protein HMPREF0628_0798 169 39 Op 2 . - CDS 181273 - 185529 4771 ## gi|282882085|ref|ZP_06290726.1| hypothetical protein HMPREF0628_0799 170 39 Op 3 . - CDS 185541 - 189671 4138 ## gi|282881980|ref|ZP_06290621.1| hypothetical protein HMPREF0628_0800 - Prom 189816 - 189875 6.9 Predicted protein(s) >gi|281298008|gb|ADDO01000021.1| GENE 1 1252 - 3909 2934 885 aa, chain + ## HITS:1 COG:BS_polA_2 KEGG:ns NR:ns ## COG: BS_polA_2 COG0749 # Protein_GI_number: 16079961 # Func_class: L Replication, recombination and repair # Function: DNA polymerase I - 3'-5' exonuclease and polymerase domains # Organism: Bacillus subtilis # 369 885 46 560 560 477 49.0 1e-134 MSKNIFLIIDGSSLFFRAFYALPLLKTKRGIYTNAIYGFVMMLENAIERVKPSHIVVCFD RKGKTFRSELYKDYKGTRQKTPNELEQQFPLVRDILKYMNIVVLDSPVYEADDIAGTLSL IASKEGYKSYLLTGDKDYYQLVDDNTNVLMTRKGITELEVVNLQSINDDYGISPQEFIDL KGLMGDSSDNIPGVPGIGPKTGLKLIKEYSTIENLYNHLSEISGKKLKENLEENKVQAFM SKKLGTIVRNIDLPVGLSDLKIKEYDYENLSKLYRDFEFNSILKRLPEKYQKEKTEEISD TFFQISNDSIEDIIENIKTSKSFAFKFISDGKIYEGIDPFKIAILPKGYNTSVIDYNKDN LSNLKALWEDDSIEKLGYDLKEDIIVLQYNKIDLKNYCHDSMIAEYLLNSTESNYEIDHL ASSYFNKAYKSEEELLGKGVKKKKFQEIDEGDLNSYFSYILNMVYKISPLQMQKIEAEGM KDLYVNVELPLIEVLANMEIVGIRTDVNILNEIDEKIKERINDLEFNIYKDADEQFNINS PKQLGQILFEKMDLPVIKKTKTGYSTSADVLEKLRGKSLIIDNILEYRKISKIKNTYIDG LRDVINKKTGRIHSRFNQTVTSTGRISSTEPNLQNIPIKTHEGRLIRKALLSSEGSSLVD SDYSQIELRVLASLSNDTYMINAFADGLDIHRKTASEVFHTPYDEVSDELRSMAKAVNFG IVYGISDYGLSQNLNIPRKEAKTYIDNYLGHFQGIKKYMNDIIHVGTEKGYVETLLHRRR YIPELKAKNFNIRSFGERIALNTPIQGTAADIIKIAMVGVYKELKKKNLKAKLILQIHDE LVVDAPDEEVAEVCEIMKDVMDNALIMKVPLSVSMKTGKSLYETK >gi|281298008|gb|ADDO01000021.1| GENE 2 3896 - 4495 566 199 aa, chain + ## HITS:1 COG:lin1598 KEGG:ns NR:ns ## COG: lin1598 COG0237 # Protein_GI_number: 16800666 # Func_class: H Coenzyme transport and metabolism # Function: Dephospho-CoA kinase # Organism: Listeria innocua # 5 197 3 196 200 125 38.0 7e-29 MKQSKIIAITGSIASGKSQVTNFLKQLYYKVIDSDIISRDIINEREVIEKIKSYFGENLY SEGVLDRSALASIIFNDREKRDLLDSITHPLIYKRISEKIEEYKREKIVFVDIPLLIENG TKSYGMNFDEIWLVYADKETQIRRLMSRDNISYDYANIKISSQMSMEEKRKYADIILDNR GDLNELKDKVLKALNRLNK >gi|281298008|gb|ADDO01000021.1| GENE 3 4492 - 5244 385 250 aa, chain + ## HITS:1 COG:lin2211 KEGG:ns NR:ns ## COG: lin2211 COG1408 # Protein_GI_number: 16801276 # Func_class: R General function prediction only # Function: Predicted phosphohydrolases # Organism: Listeria innocua # 3 249 10 282 284 85 27.0 1e-16 MKILSVIFIIFIYSIYENKYYKIHNIKIKSEKVHKKVKFIQISDYHLNPFINLKSLERHI NKFQADFVFLTGDFINRSTRPKDFSKMEDFLKIFSSEVFFVSGNHEEENNNCSLFFDILN KYHVKLFDNKNAIRGDININGKFYNGKTSNLKCLNDKYNILLIHDPLDFIYNEDKNFDLV LSGHLHGGQVRLPFIGAFIDPYFNLFPKYSKGFYKIRQSILYITSGMGSKFILRTFNPCE MIFFTLDNED >gi|281298008|gb|ADDO01000021.1| GENE 4 5312 - 7108 1683 598 aa, chain + ## HITS:1 COG:CAC2232 KEGG:ns NR:ns ## COG: CAC2232 COG0608 # Protein_GI_number: 15895500 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-specific exonuclease # Organism: Clostridium acetobutylicum # 1 586 1 587 587 460 43.0 1e-129 MEKWFIKNSKDYELSYEKYGLNKILYRILLNRGIKSDEELEKFLKPDLSNIHSPIFLKDM VKSANIIISHITKGSNIRIVGDYDVDGITSTYILYCGLKKIGAKVSYDIPNRVLDGYGIN NKIIDRAKEDDISLIITCDNGIAAFEPVKYARNLGIDVIVTDHHEPAKVLIEGVLQEKLP DANGLIDPKVSDSKYPFKDICGACVAFKLISYLYLIKGKEEQEVYDDFLAYVALATVCDV MPLKDENRILIHYGLEALKNVQDVGLNALISACDIKKEDIDVYHIGFIIGPTLNACGRLK TAKEAVELLLEKDYNSAIEKAKEIRSINNQRQNYTNDGYIKAIKIIKEQELLKKYPILLI YVPNINESIVGIIAGRIKEKFYRPTIVLTDSNGIIKGSGRSIDEYNMFEEVNVFRDELEA FGGHKMACGLSIKKENFNNFNLNLNKNAKLTRDDLTKKIYIDYPLNFSQINMKLIQDLNK LKPFGTDNEKPLFGSRNLKITDIAIFGTNKNVIKLMLEDSGVFQNALLFKDSNEFLNDLK KAYGQEAVTGLLQKSNKNIKIDVIYSIDVNNFRGNSSIELRLKSYRVNGEKDDNRRFN >gi|281298008|gb|ADDO01000021.1| GENE 5 7086 - 9221 2290 711 aa, chain + ## HITS:1 COG:CAC2274 KEGG:ns NR:ns ## COG: CAC2274 COG0317 # Protein_GI_number: 15895542 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Guanosine polyphosphate pyrophosphohydrolases/synthetases # Organism: Clostridium acetobutylicum # 3 711 4 740 740 774 54.0 0 MTIDDLIEKIKTYNPNVDEAEIRSAYELAKVNHQGQKRNSGEDYIIHPLHVAMILADMNM DSATIIAGLLHDTIEDTSVTYEDIEKKFGKEIAELVDGVTKLKKLNYKSKAEKQAENIRK MVLAMAKDIRVIIVKLADRLHNMRTLEYMTEAKKIEKATETLEIYAPIADRLGMSRVKWE LEDLSLRYLDPDEYYKLVDMVNKRRKEREELINSIIDTLKVNLERVGIKCEINGRPKNFY SIYKKMKVKGKVFDEIYDLSAVRILTNDIKDCYGALGVVHTLWKPIPGRFKDYIAMPKPN NYQSLHTTVIDNNGETFEVQIRTYQMHQTAEYGIAAHWKYKTGQTKTTSFDENLTWLRQL MEWQKDLNDPNDFMDTLKVDFFADEVFVFSPKGDVINLPEGSTPIDFAYRIHTQVGNTCV GAKVNGRIVPLSYKLSSGNIVDIITNSNSGPSLDWLNIVKSNQAKKKISQYFKIKDRDKN IEKGKEVLEKEAKRLNYNVNEFLKDEWIDEVRAKLNVSTIDDLYAALGFGTIKLSQVTAK LIDIYNRFNKKPIKNIVKSKRKAQKSGIDVKGVDGVKVRIAKCCTPVPGDDIIGYITIGR GISVHRADCPNVNNNVEESRIVQVSWQKDEANSYEAAIEVRALDKPNVIGDVANRINEAK LNMTSLNARSTRDGDAIVDVILEITNIDELEGIIEKLKRVKNVFDVYRMKA >gi|281298008|gb|ADDO01000021.1| GENE 6 9226 - 9675 687 149 aa, chain + ## HITS:1 COG:TM0730 KEGG:ns NR:ns ## COG: TM0730 COG1490 # Protein_GI_number: 15643493 # Func_class: J Translation, ribosomal structure and biogenesis # Function: D-Tyr-tRNAtyr deacylase # Organism: Thermotoga maritima # 1 149 1 149 149 158 56.0 3e-39 MRAVVQRVKEANVSVDGELIGSINKGLLVLLGVKVGDKDEDFSYIQRKVYNLRIFDDENG VMNKSLLDLGYDLLIVSQFTLYGDARKGNRPSYVQAAKSEEATYYYEKFIEESKKNNIKV EHGKFGADMDVSLINDGPVTILLDSEKEF >gi|281298008|gb|ADDO01000021.1| GENE 7 9677 - 10303 751 208 aa, chain + ## HITS:1 COG:BH2820 KEGG:ns NR:ns ## COG: BH2820 COG0491 # Protein_GI_number: 15615383 # Func_class: R General function prediction only # Function: Zn-dependent hydrolases, including glyoxylases # Organism: Bacillus halodurans # 7 205 5 208 211 171 43.0 1e-42 MDKKIIRLTVGPLQENCYIVYNKENECVIIDPGYESQRIIDTIEKEKLKPLYILLTHGHI DHIGAVKDLKDKYGISVYIHNKDKDMLEKPNKNSASLYGMSVNGAKADYFVKEGNDIKFS DDSFKVIETPGHTGGGVCYKLDNILFSGDTLFLGSIGRYDFPESSGLDLMNSLKKLTLLD KNTIVLPGHGPETSIEYELNYNPYLKRL >gi|281298008|gb|ADDO01000021.1| GENE 8 10300 - 11676 854 458 aa, chain + ## HITS:1 COG:BS_hemZ KEGG:ns NR:ns ## COG: BS_hemZ COG0635 # Protein_GI_number: 16081159 # Func_class: H Coenzyme transport and metabolism # Function: Coproporphyrinogen III oxidase and related Fe-S oxidoreductases # Organism: Bacillus subtilis # 54 444 70 484 501 220 33.0 4e-57 MISINCQDKKFKKLLNDFLIFKFPQNFEIEEIFFDIEFINQICIFTIKYSNQEKIYKLKY AEKHSLLKVIKKIILIYFDGIVNYDKSFGILTGVRPLKLYRKIRKDNNLEACQRILKEDY LLRQADINILSEIYDNQKEIVDNSSIDGYSIYIHIPFCPSRCSYCSFDAMVIDEEIIDIY IEALLKELSSLKNYYNKKPKTIYIGGGTPSSIGWKRLEKIIDEVYKDYGFADEFTVECGR TDTFSSDLLRMLKEKGVDRISINPQSFNKEIIRNLNRDNTNFDFWYEEARNHNFKSINMD LIVGLPGENRDSIINSIKKVNDLEPDNITIHTLSLKKGSRLYDENFINDKDYWDVMEFSK KFMEENNYFPYYLYRQKRMALSGENIGYAKQGHICKYNVISMEEIEDILGFGISSSSKIM DKNHNFKRTFNYKSLNDYINRINDIILMKSSLIEKKDE >gi|281298008|gb|ADDO01000021.1| GENE 9 11678 - 13207 1535 509 aa, chain + ## HITS:1 COG:BS_murE KEGG:ns NR:ns ## COG: BS_murE COG0769 # Protein_GI_number: 16078582 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl tripeptide synthase # Organism: Bacillus subtilis # 22 473 21 458 494 197 30.0 6e-50 MKLREILKDIEIIDIRGKIDLDTEISNMSYNSINIEASGLFVAIKGKITDGHKYIKNAKN HGAIVAVVEDFKEVYIPQIKVDNTRKSLADLAKNFYKDPSKDLKVIGITATNGKTTTSFM LKKILSENKINTGIIGTVYTKFADVNIPSILTTPESLELQKYFKEMLDKNISHVVMEVSS SAQQMLRVNNIDFDIVSFGNLSREHIDQHGSFENYFRDKSKIILNAKKGSFALLNMDNEY IASLKEKTKASVLTISMENLDSDFGISKLDLSTGFGKFMFHVNRDIKEINLKKQSFEVEM GSVGYASVMNGVIAISLALILQVDKNIILNALENFKGVERRFELIYDEKFKVLDDHFANE KNIDVTMTTLSQMNYKNLHILYAIRGNRGVELNRAVDERLCFWLKKLKASTLFTTFSEDT VKQKDKVTQEEKAVYAEVLKNNNIETVYFNELKDGINNILKKAQSGDIVLLAGCQGMDKG AKFVEKYLLENNLVTNIKDFTKRIDNRTC >gi|281298008|gb|ADDO01000021.1| GENE 10 13342 - 15111 2290 589 aa, chain + ## HITS:1 COG:CAC2269 KEGG:ns NR:ns ## COG: CAC2269 COG0173 # Protein_GI_number: 15895537 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Aspartyl-tRNA synthetase # Organism: Clostridium acetobutylicum # 1 587 1 589 595 674 58.0 0 MQEAMGNLKRTNYCGDLRENDIDSEVILMGWVQRARSLGSIIFIDLRDREGICQVVVNET SPEEVINKATKLHNEYVIAVKGIVRMRSSINDKIPTGKIEVLASEIKILNESQVPPIYVK DNDNVAENMRLKYRTLDLRKPSMLRNLKLRSKIYKITRDFFYDNGFIEVETPMLTKPTPE GARDYLVPSRVNSGKFYALPQSPQLMKQLLMVSGLDRYIQITKCFRDEDLRANRQPEFTQ IDMELSFVTEDDVMSINEKFLQKLFKEMLDIDIKLPLRRMKYSEAMDRFGVDKPDLRFGM ELKDISDIVKDSGFKVFEEAVKDGSVRGINVKNGAEKYSKKKIKKLEEFVKDFKAKGLVQ VKVEDEIDSSIKKFVSEEILNKIVQAFQAEKGDLILIVAGKDQVVYDSLGNLRNKIARDL DLIDKNSYEMLWITDFPLFEYDEDEKRYVAKHHPFTSPKDEDLDIILSNPEKARAKAYDI VINGDEMGGGSIRINDQEIQKKMFKALGFTDEDAKEKFGFLLEAFKYGAPPHGGLAYGLD RLTMLFTGAENIRDVIAFPKTQSATCLLTEAPTELSEKQLEEVHIKVIE >gi|281298008|gb|ADDO01000021.1| GENE 11 15123 - 15551 431 142 aa, chain + ## HITS:1 COG:no KEGG:Clos_1060 NR:ns ## KEGG: Clos_1060 # Name: not_defined # Def: positive regulator of sigma E, RseC/MucC # Organism: A.oremlandii # Pathway: not_defined # 1 126 1 126 142 77 35.0 2e-13 MEKLGIVKSIVDGYMYVEVSRESPCGVSCASCHAACAESKTEIVKVNNLIDAKEGDVVEV HINSRNVLGYFLLVYGLPLLFLFIGTCISYYFLSKTNLKNYDVYSFLIGLVFMLTAYKFI SLYDKKHMSVRDNYVSARKYRA >gi|281298008|gb|ADDO01000021.1| GENE 12 15559 - 16350 558 263 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|300814715|ref|ZP_07094965.1| ## NR: gi|300814715|ref|ZP_07094965.1| hypothetical protein HMPREF9131_1002 [Peptoniphilus sp. oral taxon 836 str. F0141] hypothetical protein HMPREF9131_1002 [Peptoniphilus sp. oral taxon 836 str. F0141] # 1 263 1 263 263 381 99.0 1e-104 MEKNKYIKPLLFFFMLTLLINLLTVFMNKRAYDKEDILRSKKEEYNKKTEELNKIKYNLN TAKETYDNLSGEFQEKFGYDYNLSQEEELRNFSMLKKNENKDILDNLRKLVKNYHKYYDG SIYTNEIFDSTMSNFTSLSEDINYEQYKDIVNDLKINKFIDEANDGAIFYLKNKNADKKD LNLYLFIYAYYSSALKFFSENENIPIYELYASVVNLENLCKKMEDLSYKLGDLNSENLEY LKNNIYELMKTYYGNLGILNSLE >gi|281298008|gb|ADDO01000021.1| GENE 13 16353 - 17336 797 327 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282882125|ref|ZP_06290766.1| ## NR: gi|282882125|ref|ZP_06290766.1| putative hemagglutination activity domain-containing protein [Peptoniphilus lacrimalis 315-B] putative hemagglutination activity domain-containing protein [Peptoniphilus lacrimalis 315-B] # 1 327 1 327 327 443 100.0 1e-123 MKRSLTYIVNIFIVLVSGFLLYLSYNNFVNNPKSTFSMNKQIKEIDLKIDKIDSNINDNK EILSNKNIQIDNLKTELNNFNVIANKDKIDELKTNINYLDIKNINSNLYLNNVGNLTQTI SPLNSLFISNNLNDEQIVSNLNFLPIYLEYTFNNNLNLKISKHNTNILKYIGVLNYLDEG SNYLVKAKLLKDYTDLNNINNEAYEILVGESKYLNLFNDLRIINFNNKGSNFTQDLEGKI RELKNNKAIDEPDLKDVDLLGVFSYDILNTSASHLLFLKTSDLQNERILEDDNGIKLMSN VKDNKEYKVNYYDSKGNSFYIDNQVSR >gi|281298008|gb|ADDO01000021.1| GENE 14 17508 - 18671 1081 387 aa, chain + ## HITS:1 COG:AF0331 KEGG:ns NR:ns ## COG: AF0331 COG1916 # Protein_GI_number: 11497943 # Func_class: S Function unknown # Function: Uncharacterized homolog of PrgY (pheromone shutdown protein) # Organism: Archaeoglobus fulgidus # 11 380 2 373 396 235 36.0 1e-61 MKENLINLKYKDKEIVLIPTAHVSTESVKLVKETIEEFNPDSICVELDKDRYKNITNPKA WKNTNIIDVIKDKKVTLLIVNLVLSAYQANIAKKLKTKPGAEMMQGIKSANELNKNLVLA DRNIKTTFIRIWRKMKFKEKCRFIFSMIFAKDESEDISEEDLEELIKRENLENVVIDMGK EYPQIAQVLLHERDKYLAYKIKNAKGKKILAILGAAHSLGVEKEIFNEYDIKELDEVPPK TTSSKIIPWIIPIAITLLIIFGFTKNVNTGIDQIKSWFIYNSVLAALFTAISLGHPLSIL TAFIAAPFTSLNPFLACGWFAGLVEASIRKPTVEDVNNVPKDIFSLKGILSNKFLKALLI VIAANLGSSIGTIVAGTSIIKNILGAL >gi|281298008|gb|ADDO01000021.1| GENE 15 18666 - 19133 531 155 aa, chain - ## HITS:1 COG:SA0699 KEGG:ns NR:ns ## COG: SA0699 COG3610 # Protein_GI_number: 15926421 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 152 1 152 164 76 24.0 2e-14 MKYYIIQFFLATFATLGFTMYYKVPKKAIVTTCIVSGLMWVLYEYNLKTTHSYLKSGFIA SFAIGIAAEICAYFYKKPATLFSLPCLIPIVPGAGMYYIMYYFIENDYEQMNRNLIQTLL VAAALSMGIVFSQAAAKFIKKIYRRYKELKNKGAL >gi|281298008|gb|ADDO01000021.1| GENE 16 19130 - 19909 858 259 aa, chain - ## HITS:1 COG:CAC2265 KEGG:ns NR:ns ## COG: CAC2265 COG2966 # Protein_GI_number: 15895533 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Clostridium acetobutylicum # 10 254 2 247 257 135 38.0 1e-31 MTNEINDKQSVKNLMNLAIYAGSLLISNGAESYRAEDTVERMVSSTHAPDNVDCYALPTA IFLSVIYKGENISIFKKIKVSDTNMKKIDMINAFSRSFVKNNYNLDEAYEYLKKIENYKE NKGKEVLAGAIATSFFTALFGGKSSEFISSFFIGAIISYFIMNFSKFKLSFFINNVVSAA LTSILAIISVYLGLGKDFDKIIIGVIMLIVPGLAITNALRDIMSGEFITGAITLVKAVFI ALAIAIGVGIGLKLMRGIV >gi|281298008|gb|ADDO01000021.1| GENE 17 20043 - 21362 1611 439 aa, chain + ## HITS:1 COG:BS_yphC KEGG:ns NR:ns ## COG: BS_yphC COG1160 # Protein_GI_number: 16079341 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Bacillus subtilis # 1 428 1 428 436 464 52.0 1e-130 MEIPVVSIIGKPNVGKSTLFNKILGKKISITEDTPGVTRDRIYQTASWLDYSFLLVDTGG LDLKDEDIFMSSIKAQVDIAVETSQVIIFLTDGIEGVSPTDREIANYLRKSNKKVILAVN KCDAKKTKENIYDFFELGLGEPYLVSSEQGTGLGDLLDEVTKSIDKYVADKEDDLIRVSI IGKPNVGKSSLFNYLSKEERSIVTNIAGTTRDAIDTKIIYKDNEYIFVDTAGLRKRKKIK ESIERYSVIRTLTAIERSSVCLLLVDATEGISEQDSKIAGFAHDNNKAMIICVNKWDAIE KDTYTMKNFEADVRRELPFLSYAPIIFISAMKGTRVEELLGLIELVDNNYNHRIQTGVLN DILNRSVLNNQPPSDKGRRGKLYYGSQVSVRPPRFLLSVNDSKLFHFSYMRYLENQIREA FSFTGTPIILDLKNRGEKA >gi|281298008|gb|ADDO01000021.1| GENE 18 21359 - 21949 431 196 aa, chain + ## HITS:1 COG:BH1639 KEGG:ns NR:ns ## COG: BH1639 COG0344 # Protein_GI_number: 15614202 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Bacillus halodurans # 1 196 1 203 206 118 37.0 8e-27 MKYGLIFLISYLIGSISGSFIIGKLFLGKDVRNAGSGNAGTTNAFRVLGVGGGLGTFFID FLKGIILVLIIKKFFGQELIFYAVFCGILGHDFPIYMNFKGGKGMAMTLGAFAAISVKLT IIPYLIWLSTVLITKYVSLGSILFFISSVIFYIVFGKFSNLSNIFVILICLMGIFRHKSN IVRLINGNENKIGGKK >gi|281298008|gb|ADDO01000021.1| GENE 19 21946 - 22953 1067 335 aa, chain + ## HITS:1 COG:BS_gpsA KEGG:ns NR:ns ## COG: BS_gpsA COG0240 # Protein_GI_number: 16079340 # Func_class: C Energy production and conversion # Function: Glycerol-3-phosphate dehydrogenase # Organism: Bacillus subtilis # 3 332 4 336 345 331 50.0 1e-90 MNITVAGGGSWGTAMARLISNKGHKVSFYIRNIEVCKDIEQNKENSKYLPGAKFEKTISI YNNLKDSVKGAEIIVLAVPTSAIRSLLISLKNFIDKDVIIVNLSKGIEVDTLDRISQVCK EILPENPFVALSGPSHAEEVGFDIPTTVVAASLDSHYANIIQEEFSTDTFRIYTNTDLIG VEIGGALKNIIALAAGISDGLGFGDNTKAALMTRGMYEMSKMGLALGANPHTFNGLTGMG DLIVTCTSMHSRNRRAGILIGQGKSIDQAIKEVGQVVEGIKTTKSCYELAKKYQIEMPIS QSLYQVLYNNKDPKEAVNILMTRKKKEEIEQIFFE >gi|281298008|gb|ADDO01000021.1| GENE 20 23016 - 24260 1152 414 aa, chain + ## HITS:1 COG:no KEGG:Clos_1406 NR:ns ## KEGG: Clos_1406 # Name: not_defined # Def: hypothetical protein # Organism: A.oremlandii # Pathway: not_defined # 19 411 21 429 432 94 22.0 1e-17 MNKKKVKNKKKVGKRILIFIVLVLILGFFIKIIKGKTYKSYNTVFPTLTTYENDIDTTFY NVLNEKVYKAGGDGIAIFNASEGQKVAVGYEIASINLMEDVSNLRDELQKVKAALKNKDS NEEVSEKVNFDRDIQKDILNKNFQGATEKINALDMDATNTFSISDLKEYLGMSKEKLLSK RDSLEKEISKYNISYRAEFTGIVSYEIDGLEDYFSPDKFSKFTYDYLDKNFKVEKNNLKL KVKKDYPMFKLIDNFTYEVVAKIQKASLINNYKKGDNIKIKINNLDILNGKVLNIIRSQK NATILISLDDSIDNIYNKRIHEGKIIVDKTRGYIIPKSCLIQRNNLMGIYVQEIKGLVKF VPVDIIREEADKVFINRGNKQSLIEVADKTYKTLTINDAVVLSPRTVDESRILN >gi|281298008|gb|ADDO01000021.1| GENE 21 24274 - 24960 712 228 aa, chain + ## HITS:1 COG:CAC2121 KEGG:ns NR:ns ## COG: CAC2121 COG0325 # Protein_GI_number: 15895390 # Func_class: R General function prediction only # Function: Predicted enzyme with a TIM-barrel fold # Organism: Clostridium acetobutylicum # 1 228 1 218 221 171 46.0 1e-42 MSVKDNLKFVMEEIEKAKRHSLTNEDVNLIAVTKNHETDVIKEAIDLGITDIGENRVQEL KSKIDELGPIVNYHMIGNLQTNKVKYIYNRVNMIQSLDTLKLAKEIDKRAGSDGIEVNCL IQINIGNEEQKSGIAYEDTLKFIYNLMDFKHISIRGLMAIAPNTDDKQYLRRLFRKMFEM KEKIIKENISSVRMDYLSMGMSSDYQIAIEEGSNMVRIGTKIFGKRIY >gi|281298008|gb|ADDO01000021.1| GENE 22 24975 - 25424 530 149 aa, chain + ## HITS:1 COG:BH2549 KEGG:ns NR:ns ## COG: BH2549 COG1799 # Protein_GI_number: 15615112 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 8 145 4 146 149 71 31.0 6e-13 MAEKTVDKLKRIFGFADDEAYYDDYQDDYQEEPETHEDRAPIESTNYKRSTKTKTSSTLG LVITVQEPLSYDESPLIVDDLRQRKAIVLNFEQLDTDVKRQIFDFVNGAIYALDGSIQKV NKDIFILAPSNVEIDGLKETLKNNGMFPW >gi|281298008|gb|ADDO01000021.1| GENE 23 25418 - 26194 234 258 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|49483354|ref|YP_040578.1| hypothetical protein SAR1167 [Staphylococcus aureus subsp. aureus MRSA252] # 22 249 27 258 268 94 28 3e-18 MVKLNKENLLNNINNSDDLYQLKKVLDKAFVVLKSYVDNSSDFLNPHELSLAKSILNSLD IGYSFDGGYDDYEYGVVNMYPSFLHGPKSESICAMKFPTIVGIKHKDVLGSLIGLGIDRR KIGDILIGKEFTYFFVKIEIKDFILYNLEKISNYNVKVSLKESTDVLPIKEYFYKDIVTS SLRLDTFLSQALNLSRSKINDIISKDLVKVNFTPENKVSYKLKESDVISVKKYGRIIFHK ILKTTKKDKYLCQIKIPK >gi|281298008|gb|ADDO01000021.1| GENE 24 26205 - 26663 374 152 aa, chain + ## HITS:1 COG:BH2543 KEGG:ns NR:ns ## COG: BH2543 COG0597 # Protein_GI_number: 15615106 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Lipoprotein signal peptidase # Organism: Bacillus halodurans # 1 151 1 150 156 90 39.0 1e-18 MFVALLSIIFIMIDQFSKFLVVKYLYDGLNLTIIDNFMWFIYTENTGAAFGILKDARIFF TIITIVSLILIFIFLIKYYGIMSTLAKLASALVIGGIIGNFIDRIRLGYVVDFISTNIFG YSFAVFNFADAFIVCGCILAFLYSIYYERKGN >gi|281298008|gb|ADDO01000021.1| GENE 25 26663 - 27550 929 295 aa, chain + ## HITS:1 COG:SP0929 KEGG:ns NR:ns ## COG: SP0929 COG0564 # Protein_GI_number: 15900809 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthases, 23S RNA-specific # Organism: Streptococcus pneumoniae TIGR4 # 9 295 6 294 295 246 46.0 5e-65 MDNFKVDKENFGQRLDVYLAKLVDLSRSQIKNLIDNEKVLVNKKNVKAGYKLSEDDVISL EYPKDNKPFAEKIDFNVIYEDEYIAVISKPQDLVVHIGAGNSSGTLVNGLLYKFKNQLSD LDPLRPGIVHRLDKNTSGLMIIAKNNQAHINLVDQFKNSQIKKYYLAIVHGKTPESGIIA EPIGRNPNDRKKMAVVYKNSKQAITKYKKLKEFQEYSLLNINLLTGRTHQIRVHMAYIGY PVLGDIIYGRKNSLKIDKQMLHSYKLIFNHPITNQKMEFTDEFPIRFKKFIDKIK >gi|281298008|gb|ADDO01000021.1| GENE 26 27702 - 28223 604 173 aa, chain - ## HITS:1 COG:TM1101 KEGG:ns NR:ns ## COG: TM1101 COG0622 # Protein_GI_number: 15643858 # Func_class: R General function prediction only # Function: Predicted phosphoesterase # Organism: Thermotoga maritima # 1 149 3 153 189 129 45.0 2e-30 MKIGVLSDTHGSLVQTKKALDALGKCDLYIHLGDVLYHGPRNPLFKSYNPQELGIFLRDK EITYIKGNCDSDVDCMYTGKDISKKERFFNLGKLKIYAVHGYEESLEERIERARKLGANV LLFGHSHIKMLKEDKGLVIVNPGSTSLPKDGSPSCALYENGKWKLIQLTEDYK >gi|281298008|gb|ADDO01000021.1| GENE 27 28224 - 28355 124 43 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MYMDLMKQGFEVAFLGLGGVFLVLILFYLCTKLMLKIFTKKDS >gi|281298008|gb|ADDO01000021.1| GENE 28 28360 - 29475 1146 371 aa, chain - ## HITS:1 COG:SPy1184 KEGG:ns NR:ns ## COG: SPy1184 COG1883 # Protein_GI_number: 15675155 # Func_class: C Energy production and conversion # Function: Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit # Organism: Streptococcus pyogenes M1 GAS # 1 364 1 370 373 357 59.0 2e-98 MEILLQGIINLQVNQIIMFIIGGLLIYLAIGKEYEPSLLLPIGFGAIICNIPFSSAIGDE GFLTILYNMGIATELFPVLIFIAVGAMIDFKPLISSPFMLFFGAAAQFGIFATMLFALST GRFTLPEAASIGIIGAADGPTSIYVAKTFAQNYLAPISVAAYSYMSLVPIIQPPVIKLLT TKNERKIRMKYTSVEVPKIVEILFPIFITIISGVLAPMSVALIGALMFGNLIRVCGVLER LSLFAQDGLANLVTILLGITIGGTMKAEAFLNINTLMIMAMGLVAFIFDTAGGVIFAKIL NLFLKHKINPMIGAAGISAFPMSGRVVQQLATKEDPTNFILMQAMSANVAGQLGSVVAGS MILALVPMIMR >gi|281298008|gb|ADDO01000021.1| GENE 29 29801 - 31513 2122 570 aa, chain + ## HITS:1 COG:FN0023 KEGG:ns NR:ns ## COG: FN0023 COG1288 # Protein_GI_number: 19703375 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Fusobacterium nucleatum # 132 569 63 498 499 466 54.0 1e-131 MKKNRDLTKFRTPHTYAIIFCVVIFSWYLTFLVPAGKFSTHDIEYTDANGDTKTKTVLIE GTFRYSYPLNDEFIKSKLPELLNDNVKVQEFGIDSQKAGELIGKDELDIDALSEAGITDD VLYSIYGDKIYDTSSKLHKTAKLWGTEDFGGFGVLNYVFEGLVSGDKYGTAVGVAALILV VGGAFGIIMKTGAVDAGIYAFISKAKGFERMAIPMFFILFSLGGATFGMAEEVIPFSMIM VPFVIALGYDSIVAVTVTYVASQVGNAVSWMSPFSVAIAQGIAGVPVLSGARFRLVMWFV TTILAAAYTMRYAEKIRKNPSLSPMHEKDAHFRISNENLSEEEKEFKLGHKLILLELLLG LIWIIWGVTSKGYYIPEIASQFFVMGLVAGFIAIIFKLNDMTINSMAQSFQNGVADLAGT AMVVGMAKGILLILGGSDANIPSTLNTILYNVGNLLNGVPKTIAAIGMYIFQSLFNLVVT SNSGQAALTMPIMAPLADIVGISRQVAVLCYQLGAGFVDAFTPVSASLIGVLGVAGIDWG KWFKFQVKMQGFFMIIGITFICIAMAIGFQ >gi|281298008|gb|ADDO01000021.1| GENE 30 31523 - 32719 1471 398 aa, chain + ## HITS:1 COG:no KEGG:HMPREF9243_1818 NR:ns ## KEGG: HMPREF9243_1818 # Name: iadA # Def: beta-aspartyl peptidase (EC:3.4.19.5) # Organism: A.urinae # Pathway: not_defined # 3 395 2 393 393 409 53.0 1e-113 MFKIIRNAIVYNPDKLGKKDVLIVNDKIIAIDDKIEISSNGVFDVEEINCEGKILVPGFI DGHVHILGGGGEGGFSNRTPEATLSILTKAGVTTVVGVLGTDGVGRDMNALLSKARALEE EGITTFVFDGNYRLPIKTLTENLINDIMVIDKIIGIGEIALSDHRSSQPSFDEFVKTVAD TRVGGILSGKAGIINVHLGDGKRCLDLINEVVEKTEIPISQFWPTHINRNAYLFEEGIKF AKKGGIIDFTGNSDPALWEKLYGEVKVSKAIKRVLEEGISEDNFTLTSDGQGSFPMFDDK GNYKGIGIGTSSCLLESIKACVFEENIPLEKAIRAITINPANILKLKNKGKIEKNYDADL CLLDEKTLDIDMVIAKGKIMVKDGNPTVFGVFENASKN >gi|281298008|gb|ADDO01000021.1| GENE 31 32875 - 33801 1016 308 aa, chain + ## HITS:1 COG:FN1397 KEGG:ns NR:ns ## COG: FN1397 COG2066 # Protein_GI_number: 19704729 # Func_class: E Amino acid transport and metabolism # Function: Glutaminase # Organism: Fusobacterium nucleatum # 17 308 15 304 304 228 44.0 1e-59 MDLNKVLTKAYDYAITYTDAGVPANYIPELAKEDKTKAGCSLISPDGKLYEIGSSRYKFS IQSIIKIIIYLCVLENHEFDYIKQYIGVKPSSKPFNSIIELELSNKNIPVNPFINAGAIV ACSLLQKKYGNNTFDLILNRTRDVIGNDKLDYSRSIYNSENSSAFANRALTYMLLNSDII DKNINVDDLLNTYFKSCSILVDAHDLSNLSFVLSRDGKDMSGNQILNKEHALIIRTLMAT CGTYDYSGDFAIRIGLPAKSGVGGGIVTASKAGYGIGVYCPGLDSHGNSYVGTRILESIS KELNLNIY >gi|281298008|gb|ADDO01000021.1| GENE 32 33820 - 34494 383 224 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|145629959|ref|ZP_01785741.1| 50S ribosomal protein L21 [Haemophilus influenzae 22.4-21] # 5 223 3 219 456 152 39 1e-35 MVNLLNSIIEPINGWIYYPILIILLLAIGLYFTIRTGFLQGRLFKESIRVVLEKPDKEGS VSSFQALMVSTASRVGTGNIVGVSTAICLGGYGAVFWMWIVAIIGGASAFIESTLAQIYK RRDKDGNSYGGPSYYIETALKNRTLGIIFSISLILTYAVGFNMLAAFNLQTAFKAYDFYK PNVTPWIIGIVLALVTAYCILGGGKRIIQFASTLVPIMGVIYIY >gi|281298008|gb|ADDO01000021.1| GENE 33 34413 - 35234 358 273 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|145632256|ref|ZP_01787991.1| 50S ribosomal protein L27 [Haemophilus influenzae 3655] # 1 246 194 440 456 142 32 1e-32 MYLRGRKKNYSICFNFGTNYGSYIYILVAIVMIILNITYIPTVFSKIFSDAFNFKAIFGS IAGSSMMYGIKRGLYSNEAGIGSAPNAAASADVSHPVKQGLVQMLSVFIDTLLICTATAF MCLSSGVEPTEELSGAPYVQEALSTFLGRYGYHFIVFSLVLFAFTTLIGNLFYVDTNLAY INGKVPSKKFMVCYRILAAVIILFGTVQEANLAWNISDLLMGIMAIINLPTILILGKKAI DCLKDYEKQKSSGKNPVFHYKDIGITEELDFWK >gi|281298008|gb|ADDO01000021.1| GENE 34 35340 - 35906 588 188 aa, chain + ## HITS:1 COG:DR0704 KEGG:ns NR:ns ## COG: DR0704 COG1896 # Protein_GI_number: 15805731 # Func_class: R General function prediction only # Function: Predicted hydrolases of HD superfamily # Organism: Deinococcus radiodurans # 8 144 9 146 198 81 36.0 1e-15 MKDLEKDLDFILEVDKMKSIFRRSINLSNDRRENDAEHSFYVAISSMILEDYADNDIDKN KVIRMLLIHDLVEIDADDTFAYDTLGYKTKYEREQKAADRLFSILSGKKAVFYRNLYDEF EEAKTEESKFANLIDRILPIFLNYYNNGGTWKEAGISKDMVINRIKPFRNSSKALYDYVL NLLDKYFC >gi|281298008|gb|ADDO01000021.1| GENE 35 35918 - 37294 1167 458 aa, chain + ## HITS:1 COG:CAC3595 KEGG:ns NR:ns ## COG: CAC3595 COG2509 # Protein_GI_number: 15896829 # Func_class: R General function prediction only # Function: Uncharacterized FAD-dependent dehydrogenases # Organism: Clostridium acetobutylicum # 4 458 3 456 457 613 67.0 1e-175 MNDFDIIIIGNGASGVFASYEFTKLKSKLKILVIDKGNDIFNRVCPIKTGRVKTCIGCVP CNIMNGYGGAGTLSDGKYNITTNFGGEMHKYLGREKSIELMEYVDSVLCSFDEGESKLYS TSNSNLKTLALKNDLHLLDAKVRHFGTDRNVKILEKIFSYTKNNVTMLFKTLATDISYKD GKYFVSTDKGQVYSSKKLILASGRSGSKWISKICKNFNIGLFSNQVDIGVRVELPAEVFK HITDAVYESKIVYQTKGYNDLVRTFCMNPYGQVVAENTNGIITVNGHAYADKKLQSENTN FALLVSNKFTEPFKDSNGYGESIARLSNMLGGGVLLQRFGDLVKGRRSDKRRMDKCFTVP TLQATAGDLSLVIPKRQLDSIIEMIYALDKIAPGTANDDTLLYGVEVKFYNSKVQTDNNF ETAQKGLFVVGDGGGATHSLSQASACGVYVARYLNENF >gi|281298008|gb|ADDO01000021.1| GENE 36 37363 - 38778 419 471 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227412248|ref|ZP_03895446.1| SSU ribosomal protein S12P methylthiotransferase [Eggerthella lenta DSM 2243] # 26 467 1 454 455 166 26 9e-40 MRDILNSNIDLIKTSQDSVNEYIRKMEEISENSLKAKVITHGCQMNEHDSEKIKWLLEKM GYKLIEDDNEADLVILNTCSVRHSAEDKVYGQLGSLKHLKTTNKNLKVAVCGCMMQRQAS RDYVIEKFENVDIIFGTNNIWKLPELLYKSYNGQKLSMDIQNKYLDLDNNLGANRLYSYK SYVNIMYGCNNFCTFCIVPYTRGREKSREADEIVDEIKSLIDKGSKEITLLGQNVNSYGR GLENKTSFAQLLYRINDIKGVERIRFMTSHPKDISDELIYAFRDLDHLCNFLHLPVQAGS SRILKLMNRKYTKEDYLRKIDKIRQVNPDIALSTDIMVGFPGETEEDFEETLDLVKRVEY DTSFTFLYSMRSGTPAAKSLNQVPDKIKHERFQKLLDILYPIQYEKNKKFINKTVKVLGE DISKKDSRKISGRNDEFKLVNFNGSAEDIGKIVNVKITSVNSFAMEGVKVE >gi|281298008|gb|ADDO01000021.1| GENE 37 38771 - 41371 2346 866 aa, chain + ## HITS:1 COG:CAC1837 KEGG:ns NR:ns ## COG: CAC1837 COG0249 # Protein_GI_number: 15895112 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Clostridium acetobutylicum # 7 866 4 869 869 673 44.0 0 MNNNKPTPMMLQYLDTKKKHPDSILFFRLGDFYEMFFDDAILASKELEIALTKRDAGFAQ KAPMCGIPYHVAHTYISKLINKGYKVTICDQVEDPKLAKGLVKRQVTKIITPGTFTDSDF LKSDENNYLMAVYLKKYDMYIAYTDFSTGELYYTYRTFLDEESLFSSVRDEIYRIMPSEI LVNEDIDKTLNKFLSNNFFITNYKNDDIVNIDIGKLVCENLTDLGQKNFNEKKLSDNIAI KTLLDYLFKTQKIHLNHINNFNHYDYYKNLVLDENSKRTLELLKGLNTNNKKGSLLEILD KCKTSMGSRLLKKWLSSPLTNIDRIEDRLNHIEDFNSDLLVTEDIKDRLKNIYDIERLSL KISNKTLNPKEINSIKETINLSLEIKKLLGKNNNNLKNLSVKIENLVFISEKIDQIIIDD PPAIIEDERVIKKGYSLELDELFSAKEEGKDWILNFEKKEKEKTGIKNLRIKYNKILGYF IEVTKSNISQIPSDYIRKQTLVGSERYFSVELKEMESKLLVSKDEALRLQSKILSELKNF LLENIIKFQNLSKIISAIDVLVSLSEVSRRNNYKRPLLNKEGLIDIKKGRHPIVEKNYKD ELFVPNDTYLDLDKNLIHIITGPNMAGKSTYMRQVALITIMAHIGSFVPCEYANISVLDR IFTRIGASDNLAMGQSTFMVEMKEVANIIDNASKNSLLILDEVGRGTSTYDGLSIAYAIL EYIATNLKAKTLFATHYHELCSLEEKYPSISNLSIAVKKEEEDIIFLRKIINGPSNHSYG IDVAKLAGIDDFIIKRAWDILNSLENNKGKNKLNKNFKIDNFEQKSIFDIKKDKFIEKVK NIDINNLSPMDAFKMLNEIIEKSKEI >gi|281298008|gb|ADDO01000021.1| GENE 38 41372 - 43261 1658 629 aa, chain + ## HITS:1 COG:CAC1836 KEGG:ns NR:ns ## COG: CAC1836 COG0323 # Protein_GI_number: 15895111 # Func_class: L Replication, recombination and repair # Function: DNA mismatch repair enzyme (predicted ATPase) # Organism: Clostridium acetobutylicum # 1 628 1 620 622 362 35.0 1e-99 MSIVLLDDNTISKISAGEIIENPASVVKELLENSIDAGAKNITVEVKNSPTDFIRITDDG CGFKADEIELAFMRHSTSKLSKIEDLEELTTLGFRGEALASISSIAKIRLLTKNSEDLAG TSSKIENGKIIEQSNVGMPHGSTFYVEDIFYNTPVRKKFLRADNVEFNLIFDVIQKIALG NPQVSISYIRDGKTLLNSYKNSNYKNHILNVLGREIATNLIENSFSSENYKIRAYFSNNK LFRSSRNHQYIYINGRYVTNREISREIEKVYKSLIPLNRFPVFILFIDINSSLIDVNIHP KKHEVKLSNENNLIAILCEMVEEVLYPNRSIREIEDEPKVNLNVFDIFDDKSNDNLINFR EPTYEPGDNDIKEFDIDSQSFYENYQPFDMNKENLDNNNDIDNIEDKTEDFNYDNIPSLE QFQEDSFLNDKEVIDSNLINTRIVGILFDTFIILENKDKDLIYLVDQHAAHERVMYEKYK KQYLNSNINSQVLLKPEIIELNASEYMKIEKNFKLFKDLGFSIDSFGENSIILREVPMIF GFPTYVSFIRDIIDSLDDKIYSNYQADMWKVMKRACLKAVKAGDTLSNMEVKELINSLIH CENPYTCPHGRPTIIDIKKTTIAKLFLRE >gi|281298008|gb|ADDO01000021.1| GENE 39 43263 - 44171 944 302 aa, chain + ## HITS:1 COG:BH2366 KEGG:ns NR:ns ## COG: BH2366 COG0324 # Protein_GI_number: 15614929 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA delta(2)-isopentenylpyrophosphate transferase # Organism: Bacillus halodurans # 2 302 3 310 314 249 42.0 6e-66 MEKLIILTGPTGVGKTKISLEIARKFNCQIISADSMQIYKGLDIGTDKIVSEDNNIKHYM IDIIEADENFSVADFQLRAKKIISQLNKKNIIPLVVGGTGLYINSLVYNLDFSTTSNDPK LREKLNKEAEIYGTQYLYDKLLKLDKETALLIDSNNRNRIIRAIEIIFNVGKKDNNFRSE NNEYDLIFLGLNMDRQKLYKKIDNRVDLMLEKGLINEVEKLLESGLSEESQSLKAIGYKE VISYLKGDISYNQMAEDIKKNSRHYAKRQLTWFRRDKRIRWFNREDEDILNQIFKFVGER IE >gi|281298008|gb|ADDO01000021.1| GENE 40 44164 - 45453 1133 429 aa, chain + ## HITS:1 COG:SA1148 KEGG:ns NR:ns ## COG: SA1148 COG4100 # Protein_GI_number: 15926890 # Func_class: P Inorganic ion transport and metabolism # Function: Cystathionine beta-lyase family protein involved in aluminum resistance # Organism: Staphylococcus aureus N315 # 13 426 3 412 412 410 48.0 1e-114 MNKYYDILKEKYDIDKKVIDFVNSCQDQLKDNFSEFSDIAMYNQVKILKSMQEAKLQATD FNWTTGYGYGDIGRDKVEEIYSKIFKCQDALVRPNIVNGTHAITLAISSIVSKGDHLLSL TGKPYDTLLKVIGINGNNKRSLINMGVEYSHIPLIDGKIDLDSFKDYVKDNTKLVMIQRS TGYSDRRAFTIEEIEQAVKKIRQIKKDVYIFVDNCYGEFTCLKEPSYLDIDIMAGSLIKN PGGGLAYSGGYVVGKKELIESAASLLTAPGIGKDCGLTFGMTRQILQGLFIAPKIVEDAL KIALLFSKCFEELGFDVIPSTKDKRSDIISAIKLENPKILEEFCKFIQFSSPVDSIYTPK PWDMPGYNDKVIMAAGGFIEGSSIELSADGPMRPPYYVYFQGGLTYYHGKIALINVLNNL SREGLVKIK >gi|281298008|gb|ADDO01000021.1| GENE 41 45552 - 46169 762 205 aa, chain - ## HITS:1 COG:CAC1832 KEGG:ns NR:ns ## COG: CAC1832 COG1974 # Protein_GI_number: 15895107 # Func_class: K Transcription; T Signal transduction mechanisms # Function: SOS-response transcriptional repressors (RecA-mediated autopeptidases) # Organism: Clostridium acetobutylicum # 15 205 17 204 204 205 57.0 5e-53 MYEDLNQRELAILFFIKKEIERKGYPPTVREICQGVGIKSTSTVYYALEKLENKSYIRKD PSKTRAIEIIDQNDGILTSKKKTIDVPILGKVTAGIPILAVENLEDTMPLSSDFVRDRDL FILKVSGESMINVGILDGDYVIIQRTNYAESGDKVLALINDEATIKTFYKEKDGFRLQPE NDFMKPIYVKDLKILGTIVGLYRKY >gi|281298008|gb|ADDO01000021.1| GENE 42 46389 - 46706 272 105 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282882127|ref|ZP_06290768.1| ## NR: gi|282882127|ref|ZP_06290768.1| peptidoglycan-binding LysM [Peptoniphilus lacrimalis 315-B] LysM domain protein [Peptoniphilus sp. oral taxon 836 str. F0141] peptidoglycan-binding LysM [Peptoniphilus lacrimalis 315-B] LysM domain protein [Peptoniphilus sp. oral taxon 836 str. F0141] # 1 105 1 105 105 184 100.0 1e-45 MQRNYVYKRNKKRFKLNLRRIFLLLIFICTFFSGVMLKKVENIDNKDDNITFAIHTVVSG ETLWTIANNYDYDNKSSFIKEIKRINKLDNSKIYPGYKLAIPLYE >gi|281298008|gb|ADDO01000021.1| GENE 43 46882 - 48417 2218 511 aa, chain + ## HITS:1 COG:CAC1816 KEGG:ns NR:ns ## COG: CAC1816 COG1418 # Protein_GI_number: 15895092 # Func_class: R General function prediction only # Function: Predicted HD superfamily hydrolase # Organism: Clostridium acetobutylicum # 5 511 8 514 514 495 58.0 1e-140 MLLYILLMIIFAIIGIGVGYAIRKYISEGKINNAEELSKKIIFEAEHEAQTKKKELLVEA KDEIQKIRASEEKKINSQKAELKQLESRVLNREEQIERKSNQVDKKDEKLSQKLESLKEK EETAEKLIAQREEELQKVAGLTAEEGKKILLSQLESQITQESALIIKENEQRIKDESNKY ARDVIATAIQRVAADQVTETTVSVVNLPNDEMKGRIIGREGRNIRAIESLTGVDLIIDDT PEAVVLSCFDPVRREVARVALEKLVNDGRIHPSRIEEAVNKAQEEVETIIKESGEQAAYD AGVHGLHPEIIKYLGRLKYRTSYGQNNLKHSVEVSQIAGILAAEIGADVKLARRGGLLHD IGKSIDHNINATHVELGVEIARKYNEPEKVINAIESHHGDVEPICVESILVQSADAISAA RPGARRETVEAYIQRLEKLEEIANSFQGIEKSYAVQAGREIRIIVKPQEISEAEITITAR NIVKKIEAELDFPGQIKVNVIRETRAVEYAK >gi|281298008|gb|ADDO01000021.1| GENE 44 48459 - 49439 982 326 aa, chain + ## HITS:1 COG:CAP0080 KEGG:ns NR:ns ## COG: CAP0080 COG0582 # Protein_GI_number: 15004784 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Clostridium acetobutylicum # 7 315 5 311 323 233 43.0 5e-61 MIKSNILDDFLDYLSSSKGHSENTIKEYYYDLRIFLRYMIIRKTNFYDNVKSLDGVDIDK VDEDLLKAINKQDIYAYISYLDKERKLSNKSKYRKISAVRAFFDYLTNKIDLLKINPSES VDLPKIEKSLPIYLNLDQAINLLKTIENSKENDFYRTRDYCICTLFLNCGMRLSELSQIN ISSIKDEMIRVLGKGNKERQIYLNNACIYSIKNYLMHRPKVSTDALFISMRKKRMSNRSI QHMIEKHIRNSGLDPNKYTVHKLRHTAATLMYQYGNADIKSLQEILGHESITTTQIYTHV NDAMLKNTVEQNPLSNIIEDENKGEI >gi|281298008|gb|ADDO01000021.1| GENE 45 49439 - 50092 710 217 aa, chain + ## HITS:1 COG:no KEGG:Nther_1020 NR:ns ## KEGG: Nther_1020 # Name: not_defined # Def: copper amine oxidase domain protein # Organism: N.thermophilus # Pathway: not_defined # 3 176 1 161 481 73 29.0 7e-12 MNLKKKLLVFTLSIVTITSSSVFAAGKLPKEASNTKIDIYINNQIKAIPDTYGKAYFDKT NNRVMVPIRYITEELGAYIQFYTEAQTNKQGILIGGVGTKLIKMNIGEKQATFHENSGKE VIETDAAPILYDGRTYVPIRFISEAMGLKVNWKDNNVYIEGSFKNKPKDADKNIEKNTDE NKSSNASINSLDELFKNTDKNDREDKSLVGEKSNLYM >gi|281298008|gb|ADDO01000021.1| GENE 46 50994 - 52232 1592 412 aa, chain - ## HITS:1 COG:CAC2264 KEGG:ns NR:ns ## COG: CAC2264 COG0112 # Protein_GI_number: 15895532 # Func_class: E Amino acid transport and metabolism # Function: Glycine/serine hydroxymethyltransferase # Organism: Clostridium acetobutylicum # 5 411 4 411 411 509 61.0 1e-144 MEIKENLKKVDFEIFSAIEKETKRQREHVELIASENFVSEAVLEAIGSTPTNKYSEGYPA KRYYAGCEHIDTIETLAIERLKKLFNAEHANVQPHSGSNANLIVYSALLKPGDKVMGMNL DEGGHLSHGSPVNFSGKFYNFTSYGLNPETERIDYDACYKLAKEVKPKLIVAGASAYPRK IDFSKFREIADAVGAYLMVDMAHIAGLVAAGFHMNPCPYADFVTSTTHKTLRGPRGGIIL TNNENKKLLDKSVFPGFQGGPLENIIAAKAVCFKEALEPSFKVYIEQIIKNAQKMGDVLQ EGGIRLVTGGTDNHLLLLDVRNLNLTGKEAEKLLSEVNITTNKNAIPNDPQKPMVTSGVR IGTPAITTRGMKENDVEKIALLMIDALKQKRDAQTIKAEVLEILKSFPLYEN >gi|281298008|gb|ADDO01000021.1| GENE 47 52336 - 54090 1445 584 aa, chain + ## HITS:1 COG:CAC2111 KEGG:ns NR:ns ## COG: CAC2111 COG1293 # Protein_GI_number: 15895380 # Func_class: K Transcription # Function: Predicted RNA-binding protein homologous to eukaryotic snRNP # Organism: Clostridium acetobutylicum # 1 568 1 561 570 318 39.0 2e-86 MSLDGSVCACLVYELNNKLVNGKIDKIYQPSKDEILINIRASRIKYKLLLSASGNYPRVH LTENLIDNPSNPPAFCMLLRKHLEGSILNKITQYKMDRIIKFDFSSKDELGLLEDKSLIL EIMGKYSNIILVNKDSKILDSLKRINFNKSRVREIVPGAIYNPIDISKGLDPRDEYDLKS RILNADKNLNLKRFLMNTYTGISPQMVMEVSYRSGIDMDRAFLSYSENDINMIEKSFYEI FESIKKCKFQPIKILKNEKFSDFYSIDLNFYNHNEKIKVSSINELLDEFYAHKQVDNRIN SLTSNYQKIIRLSIKRTKRKLEFQAQELNEALDRDKYKVYADLISSNFHNIKPGDKTLKC SNYYDNMNEIEIPLDIKLNAQQNANRYYKKYSKLKKAAGILYKQIEDDKALISYLESLLL NISLMESLDDIEDLKEEMQNQGLIKNNKRNLKKKSKSNTKNFLEFEMDGYNIFLGKNNKQ NDYLTLKFANKDDYWFHVKEGPGSHVILKNKGDNPPIDVLNACAALAAKYSSFGDSNNVL VDYTKRINIKRHPSNKLGLVIYQDFSTINIKSTNEFLQKLVKKD >gi|281298008|gb|ADDO01000021.1| GENE 48 54160 - 54480 411 106 aa, chain - ## HITS:1 COG:BH0639 KEGG:ns NR:ns ## COG: BH0639 COG4496 # Protein_GI_number: 15613202 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 6 95 5 94 100 107 56.0 5e-24 MKYNSKIKSKQTDGLFEAILELDNMEECYRFFEDICTVKEIKAISQRLEVVKLLIKEKTY HEIESETGASTATISRINRSLNYGADGYKIVLEKLGLLNDNDKDKE >gi|281298008|gb|ADDO01000021.1| GENE 49 54627 - 55283 634 218 aa, chain - ## HITS:1 COG:no KEGG:Cthe_1092 NR:ns ## KEGG: Cthe_1092 # Name: not_defined # Def: hypothetical protein # Organism: C.thermocellum # Pathway: not_defined # 2 211 12 220 225 192 48.0 8e-48 MNLEELNQKLEQINSKLNIEKGKLQVISQNFENTKKELDKEIKYEDLLTKVILLFQKTAT YAREQSKRQVEDLVTRCLQFIFETDIEFLIELSEKRSVPNAEFYVRSNYDEGYSIITKPE LERGGGVVDIISIALRIAFIQLHKPVLQGPIILDEPGKHVSEDYIFNLGDFLSKSSSLFK RQIIMVTHNAHLAQICDKSYSVDIKNGVSCVEEINENI >gi|281298008|gb|ADDO01000021.1| GENE 50 55285 - 55518 399 77 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282882005|ref|ZP_06290646.1| ## NR: gi|282882005|ref|ZP_06290646.1| conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] conserved hypothetical protein [Peptoniphilus sp. oral taxon 836 str. F0141] conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] conserved hypothetical protein [Peptoniphilus sp. oral taxon 836 str. F0141] # 1 77 1 77 77 87 100.0 2e-16 MNYEDQLNNLKKQLDRAKDLKYKADARLESLKSQRAELLKEIEKEGIKPEDLSMEIEKLE KEIVDLFQKADSMMPKV >gi|281298008|gb|ADDO01000021.1| GENE 51 55519 - 56967 1497 482 aa, chain - ## HITS:1 COG:no KEGG:Cthe_0944 NR:ns ## KEGG: Cthe_0944 # Name: not_defined # Def: SMC protein-like protein # Organism: C.thermocellum # Pathway: not_defined # 1 481 1 481 483 230 30.0 1e-58 MIYITKVHLENFQSHKNTSLEFDRGLNVILGNSDSGKTAILRAIKWALYNEPQGDYFIMQ GQNQVLVEIEFSNGAIIKRLKSSSKNDYYLKLPNQEEQKFEAFGRSVPQEIINITGMYKM SLNDDKTSILNIADQLEGPFLLNQVPSVRASAIGRLISVNYIDDALRDTVRENKTVNTNI RNLEKSKTELEEEIAKFDYLKDLEKKYEELKSIRDEISIKEDKLKLYKKLSYSFKEIDNE INSINIDISKLPDLELLSSIVTELVTLNFKNNYYINFNDKLNKLDMSIKNANVYLNNFKD FSSLEDIKDKLNECVTDFNRLNAINLEYMNLSNEITEKSNFVNSLVSFLNVDYTYNELID KLKLLNNLKNLLVSNNNIDSAISNGEIYLNKFNNLDVLQSVVNKLLTKKELLSKLDDACN RYQLLEKAILKEEDFIKESEKNIKIISKDYSDIIYKAGICPFCFNTITDDSMKHINKHLL ED >gi|281298008|gb|ADDO01000021.1| GENE 52 56964 - 57941 886 325 aa, chain - ## HITS:1 COG:BH2382 KEGG:ns NR:ns ## COG: BH2382 COG0420 # Protein_GI_number: 15614945 # Func_class: L Replication, recombination and repair # Function: DNA repair exonuclease # Organism: Bacillus halodurans # 1 314 2 317 332 261 43.0 1e-69 MKLLYFTDTHIRGTNPKNRLDNFYQTLKNKFHEVIEIAKYENVDYILHGGDLFDRPDPSV SIVSDFAKIFNEFRVPIYIVSGNHDIFGHNPSTLDRTMLGLLCNLGILNLVNDRKIILEK DIKVQLTAAPYVYSMDSKENIKNYIVKEKDKTCKYAIHLTHGFLIDKPFLKEVSHTLISD IKDTCADITFGAHYHYGFPTQVIDGKYFINPGALVRISNSMAEMNRKPKVNIIELSDEIK VKDVYLKTAKPGNEVLDRSEMERHKFKGMKINEFKEIIDSSVSLNNTDIFSLLNSIAKMD SIGADVINEAFKRVEKAQMSGAKYT >gi|281298008|gb|ADDO01000021.1| GENE 53 57972 - 59003 1639 343 aa, chain - ## HITS:1 COG:BH2383 KEGG:ns NR:ns ## COG: BH2383 COG0468 # Protein_GI_number: 15614946 # Func_class: L Replication, recombination and repair # Function: RecA/RadA recombinase # Organism: Bacillus halodurans # 6 326 3 323 349 435 68.0 1e-122 MNDNLEKKEALDKVLATIEKQYGEGSIMKLGQDAKLNIDSIPTGALALDIALGIGGIPKG RIIEIYGPESSGKTTIALHIVAESQKLGGNAAFIDAEHALDPGYAKKLGVDVENLIISQP DTGEQALEITEALVRSNAVDIVVIDSVAALVPKTEIDGEMGQATIGLQARLMSQALRKLT GAINKSKAAVIFINQLREKVGVIYGNPETTTGGRALKFYSTIRLDVRRIEIIKKGDSPIG SRVRVKVVKNKVAPPFKEAEVDIMYGTGISKTGNILDVAADMGIVKKAGSWYSYNDEKLG QGREKSKDFLDSNLNLLKEIENKVRDTLKDDSDDISVKENGDN >gi|281298008|gb|ADDO01000021.1| GENE 54 59012 - 60238 223 408 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase [Cryptobacterium curtum DSM 15641] # 260 398 756 895 904 90 37 5e-17 MKAEIITVGTELLIGSILNTNAKFLSERLIDLGVEVVRQVSVADDMNAIIKELNISMNEA DLIFLCGGLGPTNDDLTREALAKFLNKKIYIDKDAKEKLVLRFEKINKKMTDNNIKQVSL IDGSKKLDNNWGLALGEVNDYNGKKIFLFPGPPKEFEPMVDAYLAQNIHENQKIIVRSLN VIGLGESLTEDRIRKLNLENKYISINTFAHFTQTEIKLIAKGEDYEYISNVMSNSIEKLY DEFKDHIYSDNNQSVEEVLVKRLRDKNLTISFAESITGGLLAASITDVAGSSKILSSSYV TYSNNSKIKNLGVKKETLDKYGAISEQTALEMARGLKNKTNSSVCVSTTGEAGPEPSETD IGNVYICIYFSEDNYQLKHFYFPGNRERVRNRTVSQVLSNLLYLINKE >gi|281298008|gb|ADDO01000021.1| GENE 55 60247 - 60780 339 177 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase [Cryptobacterium curtum DSM 15641] # 5 172 484 669 904 135 42 1e-109 MNLPNKLTFLRILMVPIFIVFMYLNFKSSRLVATFIFCLASFTDYLDGHIARKNNLVTNF GKFADPLADKILVCAALIVLTSIGTIPAIGVIIIEAREFAVSGLRIIAASDNITIAASKL GKFKTVSQLISIILLLSNIEALYKFGIILFYFAVLMTIISGIDYFIKNKKVLDLNNI >gi|281298008|gb|ADDO01000021.1| GENE 56 60777 - 62090 926 437 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|228000795|ref|ZP_04047796.1| SSU ribosomal protein S12P methylthiotransferase [Brachyspira murdochii DSM 12563] # 1 437 1 439 440 361 42 1e-98 MNSVKIVTLGCSKNEVDSSCMMSILDKNRYSVENDPQKADIIIVNTCGFIDAAKEESIDT ILQMAKYKETGSCKKMILSGCLAQRYPEELLKEIPEADGIIGTGNISQINDILDRSIDGE KVIKVDNINSPYLEGIKKEKVNITEYVKISEGCNNNCSYCIIPKLRGKNRSRRIEDIYEE VSYLAKNGAREIILIAQNTTDYGIDLYGRYSLSKLIKEISKINDIKWIRVLYLYPDHFTD ELINEFINNDKLVKYVDIPLQHYSDHVLKLMDRHTDKEHIKNLIEKLRKIKGLVIRTTFI VGFPGESEEDFNILREFINTYKFDKLGVFTYSREESTKANNLNEQIDEDVKEYRRDIIMQ DQLKISERLLEDKIGQVLQVLIEEKIEDNLFAGRSYIDSPDIDGVIYVNSDKNLTINSFI NVKVTSSMEYDLIGDAI >gi|281298008|gb|ADDO01000021.1| GENE 57 62083 - 64416 2419 777 aa, chain - ## HITS:1 COG:CAC1812 KEGG:ns NR:ns ## COG: CAC1812 COG1674 # Protein_GI_number: 15895088 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: DNA segregation ATPase FtsK/SpoIIIE and related proteins # Organism: Clostridium acetobutylicum # 4 768 21 765 765 570 45.0 1e-162 MDKKKKILKKNKVKAPNTKTVGEPKSEIFGLFLMVIGIIFFISIFSDKMGIIGRLVYKFL SVLLGSANYIFPLLLIFWGILYNITATKLYTKRYIICSLIIYFSILILLDASKELDLTLV DRINRSIEYMSIARSGGIIGAILGFFSYKLLGSLGTYIFVGIIILVNLYIMLRTNIDQII MAYEDLSDYLEERKKILAEKKIKRENDKSNKVEEKENKKSQKEDKKLKILDNFKIKKDDL LEDNKTKENKDFIIKEYKTTNINKAQENNSNKQETSSEELTEKDKEEFKNIDQELPDETY IFPDISLLNINESNNTMSNQEIIKNGKIIEKTLDNFNMDCQITSINKGPVITCYELKPAP GIKLSRIVSLSDNISMALGSSDIRIEAPIPGKTVVGIEVANKFKDSVGLREILESSEFVN SKSDVPLTLGKDVEGNIIVESISDMPHLLIAGATGSGKSVCINTIITNILYKSSPNDVRL MLIDPKVVELSVYNGIPHLLIPVVTNPKKAGYALNWAVDEMERRYKLFAEAQVRDIKGYN KKKIKEGKISEKIPKIVIIVDELADLMMVSSNEIEDYIARLAQMARACGMHLILATQRPS VDVITGTIKANIPSRIAFAVSSAVDSRTILDMSGAEKLLGRGDMLFYPSSYSKPKRIQGA FISDEEVERLVDFVKLNNENSEINKQSLIASQINNKEKDDNLDLDPLFADAINYVLGDEQ ASISYLQRKLKVGYSRAARIVDQMEELGIIGPHEGSKPRKLLKTKEEIDELLGDDNE >gi|281298008|gb|ADDO01000021.1| GENE 58 64465 - 64923 523 152 aa, chain - ## HITS:1 COG:FN1028 KEGG:ns NR:ns ## COG: FN1028 COG0756 # Protein_GI_number: 19704363 # Func_class: F Nucleotide transport and metabolism # Function: dUTPase # Organism: Fusobacterium nucleatum # 10 151 4 145 146 152 54.0 3e-37 MMRFFYRRIMKIKIINKSKHPLPQYQTQGSSGMDLRANLDKKIILKSLERTLVPTGIYIE LPQGYEAQIRARSGLALKKGLSLPNGIGTIDSDYRGELKIIFVNLGKEDIEINDGDRIAQ MVIMKIERPDIEEVEILGDTERSQGGFGHTGL >gi|281298008|gb|ADDO01000021.1| GENE 59 64948 - 67098 1580 716 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|62291006|ref|YP_222799.1| polynucleotide phosphorylase/polyadenylase [Brucella abortus bv. 1 str. 9-941] # 1 684 9 694 714 613 47 1e-174 MELAGTELKVTVGKVAEQANGECLVQYGDTVVLVTATSSKEPREGIDFFPLSVDYEEKMY AVGKIPGGFIKREGRPSEKATLTARLIDRPLRPLFPEGYRNDVQIVATVLSVDQDHIPDI PAMIGSSIALCLSDIPFDGPTGSVQVGLVDGEYVINPNQEQREKTDINLMLSGTSSAIMM VEAGANIVSEEQMLNAILTGHEAIKEICHFIDSIVSEIGKEKSKYILFKPDQEIVDKVKD FGTDILVNAIRQKDKVVREKLTDQAKDEIRQHFEDLMEENSKDVEAAIEEIEVTEVRRGI IEEDRRPDGRKLEEIRHLSSEVGLLPRAHGSGLFTRGQTQVLSVTALGALSEEQTIDGLG DDKPKHYIHHYNFPGFSVGDTKPSRSPGRREIGHGALAERALIPVIPSIEEFPYTIRVVS EVLSSNGSSSQASVCGSTLSLMDAGVPIKAPVAGIAMGLIEEHGVTKILTDIQGLEDHFG DMDFKVAGTREGITAIQMDIKVEGIKKEILEVALERAKVARLEILDHLKTTIDKPRDHLS KYAPIIHIILIDPNKIGDVIGAGGKTINKIIEQTGVKIDIDDDGKVSVLSEDAEKAKEAI SIIESIIKEVEVGDEYLGKVKKIMKFGAFVELKKGTEGLLHISEIAHERTREVGDVLHVG DQLKVKVIEINDENGKISLSRKVLLPKPKRTEKNNDHFTEHQKEKSQYSEDETKEI >gi|281298008|gb|ADDO01000021.1| GENE 60 67158 - 67424 334 88 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227901261|ref|ZP_04019066.1| ribosomal protein S15 [Finegoldia magna ATCC 53516] # 1 87 11 97 98 133 74 7e-30 MLNKEEKIEIINEYKAHEGDTGSPEVQIAILTKRINDLNEHLRYHKKDHHSRRGLLKMVG KRRNLLRYLKDKDIERYRKLIERLNIRG >gi|281298008|gb|ADDO01000021.1| GENE 61 67390 - 67566 60 58 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLRKFEKDKSLHLLKLLILYINKLFTFSWLIVPRRFTRLRFINYRRKYVKQRRKNRNY >gi|281298008|gb|ADDO01000021.1| GENE 62 67541 - 68449 397 302 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762565|ref|ZP_02169630.1| ribosomal protein S2 [Bacillus selenitireducens MLS10] # 18 300 20 309 317 157 32 3e-37 MIVIDIDLNYIAEKNSIIALGNFDGVHKGHRKLLESTVKIAKEKKLKSAVLGFKSHSSNM YSENKKKILTTNTSKFEIFSDLGIDIVYLIDFSKEFMSMSPMEFLKDFLQEKLKVKGLVV GYDYTFAYKKAGDVNYLKEHSFLFNWLDIIEEQTWQGQAISSSLIRKLISEGKIKEANFL LDSNFTVMGKVIHNKGLGQKMGYPTANLELCDNYIIPRYGVYDTDIIVDGKKYKAATSVG TNPTVEDDGIKIEAHILDFNDNIYGKTVELIFLDFIRPELVFKNIDELFKQINLDVKKVR ER >gi|281298008|gb|ADDO01000021.1| GENE 63 68453 - 69346 727 297 aa, chain - ## HITS:1 COG:FN0635 KEGG:ns NR:ns ## COG: FN0635 COG0130 # Protein_GI_number: 19703970 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridine synthase # Organism: Fusobacterium nucleatum # 5 284 1 279 287 195 41.0 7e-50 MKFDMDGILLINKKKGITSHDVISIVRKKLNIKKVGHCGTLDPMATGLLIILIGKATKLS DYIMKNRKTYLAKVKLGLLTDSYDITGNILENQDFTVDKDKLIEVLKSFVGEVKQIPPMY SAIKVNGKKLYEYARKGVEVKRKERLVKIYSMELLDFNGKDEFVINCDVSSGTYIRTLAF DIGRKLNTYGTLLELQRNSISNFNLNECLNIDDIESIDLEELNNRIIPMEKALLNFEKFS YPSDFYDKLLNGIKFQTEKDFEDKIFRLYCRDKFIGLGRMEVDNGRNYMALFKKLIR >gi|281298008|gb|ADDO01000021.1| GENE 64 69336 - 70334 248 332 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149007035|ref|ZP_01830704.1| 50S ribosomal protein L31 type B [Streptococcus pneumoniae SP18-BS74] # 18 310 9 293 311 100 27 6e-20 MRLIMVKNFNEYIKILEEKINKANTIAIASHMNPDGDNLGSKLCLYKLFKNLNKEVYVIE NDQVPTAEKFLPGVEHLVDSDTLEDKKIDLMIVTDCGDIERIGRAESIFKKADFTVNIDH HETNVEFADLNLVDRKAPAVCEFLYLILKQMNFSIDKDMATCLYTGISTDTGSFKYDSIR PLTFEVAIELLKIGIDINKITVNLYQRRSKEKTELLIRALNNIRYYENNKIGLVSINEKD IFETGARKSDSDGIVEFVRDIDGIELSIFINEKKDYYKLSTRSKTYVDCTKIAKVFGGGG HIRAAGATLYKKDYPNLCDAINRIIDLSSNEI >gi|281298008|gb|ADDO01000021.1| GENE 65 70306 - 70662 395 118 aa, chain - ## HITS:1 COG:BH2411 KEGG:ns NR:ns ## COG: BH2411 COG0858 # Protein_GI_number: 15614974 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome-binding factor A # Organism: Bacillus halodurans # 1 113 1 112 116 92 43.0 3e-19 MDNKRINKISEEVKRCLMDIVQNKIKDPRIPTLTSISHVEVTRDLSFAKVYVSIFADDIK KQKALQGLESAKGFIKKELAREVKLRVMPELIFINDDSIEKGLKMDKLINEVNHGKKF >gi|281298008|gb|ADDO01000021.1| GENE 66 70664 - 72922 2661 752 aa, chain - ## HITS:1 COG:BH2413 KEGG:ns NR:ns ## COG: BH2413 COG0532 # Protein_GI_number: 15614976 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation initiation factor 2 (IF-2; GTPase) # Organism: Bacillus halodurans # 1 751 1 729 730 611 48.0 1e-174 MSNIRVHALAKEIGITSKELLIKLKELNIEAKNHMSTIDEKDEEKVRKLYSKGTKKDDSK VKESKNIDKKSQKNQNTKKDSHKEKIDQTVKNNNFNKKHKISNDITEDEDILKHKRNINQ KNLHKNKKNNVNEQEEKKEYKPKDLSKKKPKKKQKNKDKSHDHSEEGPIKIKAPLTVKDF AEKTNQGISAVMTKLIGLGVMANQNQSIDEDTCILLADELNVQIEIAQDDESAITIEEKF GLLKEDKERDLKLRAPVVTVMGHVDHGKTSLLDVIRKSHVTAQEAGGITQHIGAYTVNLK GKKITFLDTPGHEAFTSMRLRGAQTTDIAVLVVAADDGVMPQTVEAISHAKSADVPIIVA ITKVDKPDANPDRVKQELMNYNLVSEEWGGSTIMVAVSSKTKEGIDDLLEMILLVAEMQE LKANPNRLAVGNIIEANLDKSKGPMATVLVKNGTLRSGDYVVSGVCYGRIRAMVDDKHRK IKKAGPSMPAVILGLSDVPNAGDLIYAVKDDKTAKTISEKNAELARDERLSNTNKISLEN LFAKIKEDEMKELNLVVKADVKGSVEALIQSLLKLSNDEVKISIVHSGVGGINESDVTLA SASNAIVLGFNVRPNINAIDLAKNEEVEIRTYRVIYDILNDIEKAVKGMLEPTIVEEIMG RCEIRQIFKLPTNNIVAGVYVLSGKILRNSKVKVLRDDVVIHEGDISSLKRFKDDVKELP TSYEGGLMIDGFNDVKEGDLLESFVLKEVKKD >gi|281298008|gb|ADDO01000021.1| GENE 67 72953 - 73213 253 86 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|206900953|ref|YP_002250931.1| ribosomal protein L7Ae family protein [Dictyoglomus thermophilum H-6-12] # 1 86 1 86 98 102 53 2e-20 MVKTRKIPMRTCIGCREQKPKKELIRVVRNKENQIFIDLTGKANGRGAYLCRSKDCLDKA IKSKALNRAFSTEIDKETYEKLKESI >gi|281298008|gb|ADDO01000021.1| GENE 68 73256 - 74548 781 430 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|17988250|ref|NP_540884.1| transcription elongation factor NusA [Brucella melitensis 16M] # 4 395 9 416 537 305 38 1e-81 MNQEFIEALNEIEKEKGISKDIIFDALEQALVSSYKKNYGTSQNVIVKMDRETGEIKLFA YKNIVEEVENPEIEISLEDAKKIDINFKLGDNYTKEIHPKNFGRIAAQTAKQVVIQRIKD AERDVIFEDFTKKERELLTGLVQRSNHGNVYVDLGKTEGILLPNEQIKGESYKHGDRYKM LLLEVKKSSKGPQVILSRSHPDLIKRLFELEVPEINEGIVEIYSISREAGSRTKIAVFSL DPEVDPLGACVGYKGQRVNAIVDELSNEKIDIVIYQKDPQEFIANSLSPSKVEKVFINED DKSALAIVPDYQLSLAIGKEGQNVRLAAKLTGWKIDIKSMSQYEEYLEEENITEEELEKR FSEKKESDLSESDSLDSYDNSNEENSEDLEVEKNEDTLKSNENIEEVSDNNINNEITEDF ENDIESNDID >gi|281298008|gb|ADDO01000021.1| GENE 69 74560 - 75021 512 153 aa, chain - ## HITS:1 COG:PA4746 KEGG:ns NR:ns ## COG: PA4746 COG0779 # Protein_GI_number: 15599940 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Pseudomonas aeruginosa # 19 153 17 151 152 98 34.0 4e-21 MDKKSFKNQIFKIAQVSAEELGYEIVDIEYQKGNKHDLLSIFIFKKEGIDLDDCTMMSHN IEKNLDNLEILSRPYYLEISSPGLDRPIKTKDDYRRNLENEVEVKLYGPYNGKKEYVGIL KDYNEHNVIICVENDNIEIPIKNISSMKQVIRF >gi|281298008|gb|ADDO01000021.1| GENE 70 75122 - 79369 3878 1415 aa, chain - ## HITS:1 COG:BH2418 KEGG:ns NR:ns ## COG: BH2418 COG2176 # Protein_GI_number: 15614981 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit (gram-positive type) # Organism: Bacillus halodurans # 222 1412 236 1433 1433 1139 49.0 0 MDLKIILDKLNVKYDENLSAKIKSVKYKKSSKEIFIEIDSNEDLESYLNNQIEQALREYF DSSTIHLSYNKISNPYIDEYDLITKEITNYNPSSSSWLNDMSIKIDKEHLQVDILCPSDE VYHSLISNGLSKILQDKLVLFDDYKINFVKNINKEPDKELFLNKFEEEEKNICKLTEIKP TEQSKKFDDLKSDDNKYIYKSGRFKLGDYAKLIDMSINNPNMTFEADIFKIEYRELKNCI LASFSVTDYSYSVLCKAFLKDKEVEKFQNEFNNGDHVLIGGQLSYDSFSKCDTLMIRYME KTEKETPKDTAQEKRVELRVHTKMSQMNGVTSFSDFAKRAKSFGHKAIAITDVSDVQGFP EAMDASKDFDIKVIYGLDANFVDDEEDIVINYNENKSYNTYVVFDIETTGLSPIRDKITE IGAVKIVDGIITERFSQLINPQMLIPEKVQELTRITNALVENEPTIEEVAPKFYDFIKDS VLVAHNAKFDTAFIRRVFKENDLDFINPILDTLSFARATVKDTKKFNLATLCKKFGVSLV GAHRAVNDAEATAHLFIKLINKIFDPKHIDFNKLNSLKSQIEPEILFESSLSILTKNEEG LKNLYKLVSDSHMKYFNRVAKVPRSLINKYRKGLLIGSGDESGEIFNAFFRNLEIDEVEK IASFYDYLEIQPIDNFIPSLLRNKLTREDIIEINKKICKVGENLGIPVIATSNCFYLDEK DDLVRRIILNGKVGAPDYNAKIKQKLYFRSTDLMLEEFLYLGTDKAMEVVVTNTNLINDS IDNVKPIPDGKYPPVIEGSEETLKNITYKKAHEIYGDPLPQIVEARLKKELDSIISNGYA VLYIIAQKLVKKSNDDGYLVGSRGSVGSSFAAHMADITEVNPLPAHYICPQCKYSEFMED PTIGSGVDLADKNCPKCGHKLNKNGHNIPFEVFLGFYGDKEPDIDLNFAGEYQPNAHKYT EELFGKGYVFRAGTIGKVAYKTAYGYVKKFFENQEDISQTEVDRLTIEATGVKRTSGQHP GGVMICPKSKDIFDFTPIQYPADDKSSGVITTHFDYNFIHGKILKLDILGHDGPTIIKML EDFIGIDTSKIPLDDKDTLSLFSSGEKLNLDKNIFDVSTGTLGIPEFGTGFVRQMLIDTK PKNFAELVRISGLSHGTDVWLGNAADLVSSGQASLSEVICTREDIMLYLIAAGAENKMAF DTMEKVRKGKGLTEEQIKIMNNLKLPPWYIDSCLKIKYMFPKAHAVAYVMLSFRIAYCKL NYPLAFYATYFTIKLSDFVGEVIINGPEAIKAQIDFINNKETPSSKEQTQMPIYEVALEM YSRGLEFLPVDIYKSKAQEFTIEDKKIRMPLRALTGVGEQAAKNIIEARNDGQFLSKEDL LKRAKVGKSLLNIFEINNVIKDMDDTNQISMFNMF >gi|281298008|gb|ADDO01000021.1| GENE 71 79446 - 80507 1160 353 aa, chain - ## HITS:1 COG:CAC1797 KEGG:ns NR:ns ## COG: CAC1797 COG0821 # Protein_GI_number: 15895073 # Func_class: I Lipid transport and metabolism # Function: Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis # Organism: Clostridium acetobutylicum # 3 351 1 349 349 381 56.0 1e-105 MTINRKKTRQVKVGNVYIGGDAPISVQSMTNTITKDIDSTVKQIKKLEDAGCDIIRFAVN DLDDAKAIGPIKERINIPTISDIQYDYKLALAACENNIDGMRINPGNIGAKWKVKEVVEA CKDKGISIRIGVNSGSIKQEFLDKYKGVNENSIVYSALDEIETLESLNFTDIKVSLKASN VNLSLDSYRKFSEISDYPLHLGITEAGPPPIGIIKSSIGIGSLLAEGIGDTIRVSLTADP IYEVKVGKEILKSLGLRNEGIDLISCPTCARTKVNLIDIVDKAQKRLDSLDMNLKVAMMG CAVNGPGEAREADIGIACGNKSGLIFKKGKIIKKCPEDELLNQLFIEIDKMKD >gi|281298008|gb|ADDO01000021.1| GENE 72 80504 - 81511 844 335 aa, chain - ## HITS:1 COG:CAC1796 KEGG:ns NR:ns ## COG: CAC1796 COG0750 # Protein_GI_number: 15895072 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted membrane-associated Zn-dependent proteases 1 # Organism: Clostridium acetobutylicum # 4 326 6 330 339 212 38.0 7e-55 MSALIGSIIVFLLVVLLHEFGHFSVAKLVGIKVNEFSVGMGPKIFQKTKGETKYSLRALP IGGYVAMEGEDEESFDPRSFNNVSVFKRMAVVLAGVTMNFILAIFCFFILFYFIGFGSNI IDTVIKDSPADAAGLTKGDKIVGVNYVRTDNLNDIVEEISKNNGKELNLNILRNNESINK KIMPKFSKEENRYIIGFSSTRQRSFLGSFSLAFKQTGDVVKAIFSVFSLIRDGKFTSDMI SGPIGVISIIGQETSKGFLYLVQILAIISANLGVMNLIPIPGLDGGKFLLLIIESIRGKA ISEKLEMKLTMIGYGILLTLMIYVTIFNDLGRLFK >gi|281298008|gb|ADDO01000021.1| GENE 73 81521 - 82306 577 261 aa, chain - ## HITS:1 COG:SP0262 KEGG:ns NR:ns ## COG: SP0262 COG0575 # Protein_GI_number: 15900196 # Func_class: I Lipid transport and metabolism # Function: CDP-diglyceride synthetase # Organism: Streptococcus pneumoniae TIGR4 # 2 259 3 267 267 106 33.0 4e-23 MKDLTKRLITAIVGVIILIGVLLLGIKAVKVAVFIVTLEIIRELYNAFYKLEIRISLPIL YLSSLITFLFSYFNYNIIFPLIITFLINGFFSIILIKYSTRDMVYTIFSYFYGVFFINLL AYVNEISFLISAFIIAFSTDTFAYIIGSKFGKHKLIERISPHKSVEGAIGGSIFSVIVTG FYFYFVKTHYINFDIDISVLIIILLASISGQFGDLFASKIKRETGIKDFSQILPGHGGFL DRFDSLIFVCPFVYFLYYFIS >gi|281298008|gb|ADDO01000021.1| GENE 74 82306 - 83031 775 241 aa, chain - ## HITS:1 COG:CAC1791 KEGG:ns NR:ns ## COG: CAC1791 COG0020 # Protein_GI_number: 15895067 # Func_class: I Lipid transport and metabolism # Function: Undecaprenyl pyrophosphate synthase # Organism: Clostridium acetobutylicum # 7 241 19 256 257 249 53.0 3e-66 MSFYDVINLDNIPKHIGIIMDGNGRWAKSKNLPRSFGHKAGSDRVIDIVEASYELGVKSL SLYAFSTENWKRPRDEISKLMELIKYYIRTQLAKINKNNVRINVFGDIEPLPESVKKEIL MAVEKTKNNDKMNLNICLNYGGQDEILRACKNISKDVFDGKITTEDINKEIFDSYLYSKG QDSLDLLIRPSGELRVSNFMLWQLAYAEFYFSNILWPDFTKEELYKAIYSYQNRDRRYGG L >gi|281298008|gb|ADDO01000021.1| GENE 75 83084 - 83641 828 185 aa, chain - ## HITS:1 COG:L0367 KEGG:ns NR:ns ## COG: L0367 COG0233 # Protein_GI_number: 15673991 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome recycling factor # Organism: Lactococcus lactis # 1 185 1 185 185 179 54.0 2e-45 MINDLKKSSEEKMKKTISSLKEDFQSIRAGRANTSLLDKITVDYYGQQSPINQVAGLSAP EPRMLMISPWDPKLIPEIEKSILKSDLGITPSNDGKVIRLIIPQLTEERRKDLTKVVGKN SEAAKIAIRNIRRDAMDEIKKAEKSKEITEDDRKSNEEEIQKLTDKYIEEIDKITKAKEI ELMEI >gi|281298008|gb|ADDO01000021.1| GENE 76 83651 - 84355 1032 234 aa, chain - ## HITS:1 COG:CAC1789 KEGG:ns NR:ns ## COG: CAC1789 COG0528 # Protein_GI_number: 15895065 # Func_class: F Nucleotide transport and metabolism # Function: Uridylate kinase # Organism: Clostridium acetobutylicum # 3 234 5 235 236 307 65.0 1e-83 MPQYNRIVLKLSGEAMAGKQGVGIDLDVINKIANQVKKIHDLGVETGIVVGGGNFWRGRD AQTIDRATSDYMGMLGTIMNALALQDALEKLDVNTRCQTAIEMKAVAEPYIRRRAIRHLE KGRVVIFSAGVGNPFFSTDTAAALRAAEIDADVILLAKKGVDGIYDSDPKFNKDAKKYDS LSYQEILNKNLKIMDATATSLCMDNKIPLIVFGIDKEDSMYDVVCGKFLGTVVS >gi|281298008|gb|ADDO01000021.1| GENE 77 84364 - 85014 293 216 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42631241|ref|ZP_00156779.1| COG0264: Translation elongation factor Ts [Haemophilus influenzae R2866] # 60 216 142 282 283 117 40 4e-25 MKISASLIKELREKTGAGMMDCKKALAETDGNMDKAFDYLREKGLSSVAKKSSRITSEGL VDSYIHGGRIGVLIEVNSETDFVAKNDEFKRFVRDMAMQVAAVKPKYISREEVPEEELAH EKEVLTEQARQEGKPEKIIEKMVEGRLEKFYEEIVLLDQKFIKDSDKKVKDILNDLIAKI GENIKIRRFVRFEVGEGLEKKNEDFAEEVAKQMGQN >gi|281298008|gb|ADDO01000021.1| GENE 78 85079 - 85903 964 274 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169824403|ref|YP_001692014.1| 30S ribosomal protein S2 [Finegoldia magna ATCC 29328] # 1 270 1 269 269 375 70 1e-103 MSVISMKSLLEAGVHFGHQTRRWNPKMSKFIFTERNGIYIIDLQKTVKKIEEAYDFAREI SANGGKILFVGTKKQAQDAIEKEAKKCEMPFINQRWLGGLLTNYKTIRKRIDRLFKLIEM EDDGTFDVLPKKEVIQLIHERERLEKFLGGIKDMDKMPDALYIVDPKKEKIAVKEAHILG IPVIGIVDTNCDPDELDFPIPGNDDAIRAVKLITETIANAVLEGKQGTQNVVEDDEENMD TEENVPSEEVNIEEALDTDVPQAEEESAEKQEEE >gi|281298008|gb|ADDO01000021.1| GENE 79 85842 - 86030 207 62 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLKFTTYDILLNDNNNTHSLMVEELHYVLLPQDENGGLNGGKNVSYINEKFIRSWGSLRS SN >gi|281298008|gb|ADDO01000021.1| GENE 80 86232 - 86420 244 62 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227484646|ref|ZP_03914962.1| ribosomal protein L32 [Anaerococcus lactolyticus ATCC 51172] # 1 56 1 56 59 98 75 2e-19 MAVPKRKTSKQRKNKRRASSYVLNKATFVECPNCHEMKLPHRICPECGYYDGKEVIKIEE AN >gi|281298008|gb|ADDO01000021.1| GENE 81 86423 - 86953 476 176 aa, chain - ## HITS:1 COG:CAC1744 KEGG:ns NR:ns ## COG: CAC1744 COG1399 # Protein_GI_number: 15895021 # Func_class: R General function prediction only # Function: Predicted metal-binding, possibly nucleic acid-binding protein # Organism: Clostridium acetobutylicum # 39 173 13 139 140 84 39.0 1e-16 MLLDLSNFLSEELDEYSFSGNLESTDSSFEVDDLNLIFPIYYKGKITNLISGYELNLQIT YKFKTHCDRCLKEIVAEIQTPYKGYYYKDKDLYDEDSVEDYFQIQEQAINLDEIIISLVI MSKPYKVLCKEDCKGLCPICGTNINENTCECSKKITEQSIDPRFAKLKDLFKNEEV >gi|281298008|gb|ADDO01000021.1| GENE 82 87034 - 88227 1691 397 aa, chain - ## HITS:1 COG:TM0274 KEGG:ns NR:ns ## COG: TM0274 COG0282 # Protein_GI_number: 15643044 # Func_class: C Energy production and conversion # Function: Acetate kinase # Organism: Thermotoga maritima # 1 397 1 399 403 497 61.0 1e-140 MKILVINCGSSSLKYQLIDMTDESIMAKGLVERIGIEGARIKHETIGKEKKVTECPIEDH KKALKLVMDSLIDAEYGAIKSLDEIAAVGHRVVHGGESFSKSVIIDEDVMKAIEENVEIA PLHNPPNIMGIRACQKLLPKIKQVVVFDTAYHQTMPDESYIYALPYEYYEKYKVRRYGFH GTSHAYVAHRAAEMLDIDFDKVNLITCHLGNGASLTAIKGGKSIDTSMGFTPLEGLIMGT RSGDLDPAILPYIMQKENLNSDEMNNVLNKNSGVYGISGVSSDFRDIEEAQEKGNKRADL ALRAYAHRVRKYIGAYFTELDHVDGIVFTAGLGENSPEMRESICKGLEILGIKIDTQKNN VRGKDTVISADDSKVKVLVIPTNEELMIARDTLKLVK >gi|281298008|gb|ADDO01000021.1| GENE 83 88324 - 89472 1150 382 aa, chain + ## HITS:1 COG:TM1513 KEGG:ns NR:ns ## COG: TM1513 COG1323 # Protein_GI_number: 15644261 # Func_class: R General function prediction only # Function: Predicted nucleotidyltransferase # Organism: Thermotoga maritima # 9 364 2 393 418 189 32.0 7e-48 MQIAGLICEYNPFHWGHLFQINEIKKTFSPYIVAIMSSNFTQRGEPSVISKFSRARLAVD MGVSLVLELPTIYSSSSAKNFSLGGISILKSLGIIDKLYFGCENDYRFLEEINNKIINNF DKSKLESNIKKGYSYLRAMEMSFDFLNEEEKNVLNKPNNKLAIEYIRAIEKLRADFSFCG ILRKETSHNDLSYSGKFSSSSYIRKLLYDKKDISTFIPYSSNNFKDLHFLDDLYDLFKFK ILTYRIDYDSYMDYEEGLENRILNNLNACNVYDFINRVNSKRYTSSRIKRLMIEILLDIR RDLVKKALNVDYIRVLAMDDRGREILNLIENNKIIKFKENYDKSNGILKELMNIECKATN IYNLKNSIMNEDFTKSPYVKKN >gi|281298008|gb|ADDO01000021.1| GENE 84 89482 - 89922 832 146 aa, chain - ## HITS:1 COG:MT2997 KEGG:ns NR:ns ## COG: MT2997 COG3599 # Protein_GI_number: 15842473 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division initiation protein # Organism: Mycobacterium tuberculosis CDC1551 # 7 133 10 130 247 59 26.0 2e-09 MTLTNLVDELEDLVETASQIPLTGKVMVDRQEFMEILNDIKAQMPGEISQAQKIYQDKDN IINGAHDEADKILSAARSHAEKVIDENELVIQAKDKAEQILTQANKESNEIRERVRDYAD SLLENTQSNLAEIIKKLNENRQELRG >gi|281298008|gb|ADDO01000021.1| GENE 85 89926 - 90405 348 159 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764798|ref|ZP_02171851.1| ribosomal protein S19 [Bacillus selenitireducens MLS10] # 4 155 7 158 164 138 46 2e-31 MKVIYAGSFDPVTNGHLDIIERAKSIFGHVIVAVLDNVSKKSLFTTEERLFLLKEVLKDD ENIEIDSFSGLLVDYAKKKNCKVIVRGLRSASDYLSEYTLAMANMHYKDGVETVFLLGSN EKLFVSSSLAKEVATFDGDLTLFVPDIVGKAMKDKLLRR >gi|281298008|gb|ADDO01000021.1| GENE 86 90383 - 90952 306 189 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764797|ref|ZP_02171850.1| ribosomal protein L29 [Bacillus selenitireducens MLS10] # 1 181 12 194 199 122 36 1e-26 LMRIIGGDCRGIKLSAPLGLNTRPTLDRIRESLFNILGQYFNGGTVLDLFAGSGCNGLEF LSRGVDFSYFVDNSSQSYNVITSNIEKCRLKDKSKVLKMDYKKALESFLSETFSYIYMDP PFMKRDYYIDSINLIKENRLLKKDGLLIIEHKTDDTFELPEGFSEIKNKKYGNTSLSIWS FVNESNICG >gi|281298008|gb|ADDO01000021.1| GENE 87 91039 - 93063 1750 674 aa, chain - ## HITS:1 COG:CAC1736 KEGG:ns NR:ns ## COG: CAC1736 COG1200 # Protein_GI_number: 15895013 # Func_class: L Replication, recombination and repair; K Transcription # Function: RecG-like helicase # Organism: Clostridium acetobutylicum # 1 667 1 675 678 496 42.0 1e-140 MNIDDNIKNLKSVGPKRLKLLNSIGIFSIKDLLYFYPRRYEDSSKILKLSEGIIGEKSTF RCRILSLLDNRNLRKGLSITSFLIEDDSAEAKLIFFNNRFIKNTIDFGETYLIYGKYERF RGRIQLTSPEIEKVDNIRNLGRIRGIYNQTKGLTNNNIDYLIDQVIDKNLFEECIPNDLI KKYSLIDKNKAIKNIHRPENRKSYALSKQRLIYEELLFFELSILSMQNKNNSSHGIKFNI PNKIYEFINNLPYKLTSGQEKVLKDITGDMQNGKSVNRLIQGDVGSGKTIVSIILSLVAV LNGYQCAIMAPTEILAKQHFENFNSLLEDYGVRIKLLVGSTPSKVKKEILTNTANGMIDI LIGTHSLIEDDVKFFNLGLNVIDEQHRFGVIQRSKLRYKNDKACNIIMSATPIPRTLSLI LYADLDISIIDTMPGGRKNIKTLAINSSQVNEALTFIEKELNAGHQAYVICSLIEDNEDF ENLESVEKVFKDLKKFFKNYKLALLHGRLSTDEKNKVMEDFKNRKIDLIVSTTVIEVGIN VANATVMMIYNAERFGLSTLHQLRGRVGRGDAQSYCILFNNSKSEISWRRMKIMTDSTDG FYIANKDLELRGFGDILGVRQSGIPNLRLANPLKDQKILSYASTDAKNILKEDIDLTGKY KNLKKFVDEFQENM >gi|281298008|gb|ADDO01000021.1| GENE 88 93106 - 94767 1974 553 aa, chain - ## HITS:1 COG:CAC1735 KEGG:ns NR:ns ## COG: CAC1735 COG1461 # Protein_GI_number: 15895012 # Func_class: R General function prediction only # Function: Predicted kinase related to dihydroxyacetone kinase # Organism: Clostridium acetobutylicum # 1 553 1 547 547 420 43.0 1e-117 METKVINGNLLREIFKGAVNYLISKKEEVNALNVFPVPDGDTGTNMSLTGKSALKQIESL GDNPSVSDVALLAARGALMGARGNSGVILSQFLRGLSEGLKDKDEASISEMALAFKKASD TTYKAVMKPVEGTILTVGRETADFALKVQNRYDNFEEFLTNVIEAANISLDKTPEKLEVL KEAEVVDAGGKGLVVLLEGALLVIKGEKISNLTEDEILKKKAQKEIDFGQADTSLKYGYC TEFVIHTDSEDIADLRSKLSPIGDCLLVVGGGGSGIIKVHVHTNHPGKALEYACELGLLQ DIKIDNMRYQHREILFDDSEVKKAKEREEKISKKPKANGFLAVSMGNGISELFKSLGIDF IVSGGQTMNPSTEDILKGIEEINADRIYILPNNSNIILAAETARDISTKDIVVIPSKSIP QGVAAMLAFNELKSNDENKENMIQALQSVVDAQVTYAVRDTTMDGKEVNKGDFISISNKK LQASGKILDDVVVDTIDKMMDEDKTLITLYYGVDIKDEDAQNLDKKLREKYPDCDTELIK AEQPIYYYIISLD >gi|281298008|gb|ADDO01000021.1| GENE 89 94779 - 95132 453 117 aa, chain - ## HITS:1 COG:CAC1734 KEGG:ns NR:ns ## COG: CAC1734 COG1302 # Protein_GI_number: 15895011 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 5 116 4 116 116 100 50.0 6e-22 MPAIINSELGSIVIDNSVIANIAGISAMESYGIVGMASKSATDGIFELLKFENLSKGIKV NTENNQINIELHVVLEYGVKISVVGQNIIERVKFNIENLTGLTIDNIEVLVEGIRLK >gi|281298008|gb|ADDO01000021.1| GENE 90 95312 - 95503 233 63 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229227420|ref|ZP_04352034.1| LSU ribosomal protein L28P [Desulfotomaculum acetoxidans DSM 771] # 1 63 1 63 63 94 68 3e-18 MAKRCDICGKQKVFGNKVSFSHHKSNRSWAPNIRRVKAIVNGSTKRINICTRCLRSKKVE RAI >gi|281298008|gb|ADDO01000021.1| GENE 91 95584 - 96219 763 211 aa, chain - ## HITS:1 COG:CAC1731 KEGG:ns NR:ns ## COG: CAC1731 COG1564 # Protein_GI_number: 15895008 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine pyrophosphokinase # Organism: Clostridium acetobutylicum # 3 211 2 211 211 95 30.0 5e-20 MKKALLISGGNRVSKKLLDKYLDRFIIVADGGMKMLRDYNILPNLIIGDMDSIDDKSLNF IEKNNIKREIYPSHKNLTDTEICLERLVDLAYEDIVITGALGSRFDHEIANTFLLIDLYK KNIIAKIVDDNNEILYLEKGTYYFKKDDKKYISLISLSNQTVFTSEGLEYEVKNFTISRN KPGLGVSNEIKNEIGKIIIEKGKVLLVKSKD >gi|281298008|gb|ADDO01000021.1| GENE 92 96216 - 96860 795 214 aa, chain - ## HITS:1 COG:CAC1730 KEGG:ns NR:ns ## COG: CAC1730 COG0036 # Protein_GI_number: 15895007 # Func_class: G Carbohydrate transport and metabolism # Function: Pentose-5-phosphate-3-epimerase # Organism: Clostridium acetobutylicum # 2 210 4 213 216 213 51.0 1e-55 MLAPSILSADFTNIREDFKIMNEEKCDFIHVDIMDGNYVPNISFGPGIVKQLRTLTDIKF DTHLMIENPENYIKDFAQSGSDIITIHPSTTKHLDRTLNLIKSYGMKCGIALNPSDDLTC LKYILKDLYLVLIMSVNPGFGGQSFIENSLLKIKDLRNIIKNNSYDTLIEVDGGVKIDNA QKILDAGADILVSGSGVFKGDIRNNIKKFKELMS >gi|281298008|gb|ADDO01000021.1| GENE 93 96860 - 97717 725 285 aa, chain - ## HITS:1 COG:lin1933 KEGG:ns NR:ns ## COG: lin1933 COG1162 # Protein_GI_number: 16800999 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Listeria innocua # 1 283 2 288 291 209 40.0 4e-54 MQGKIVKLLGGFYYIKSGDKLIETRARGTFRYVKESPIVGDNVEFNYDDNTLGYIQKIYP RKNILTRPKVANVDLIVLFIPLKNPDYNLTLIDKTIVQIEISNIDILIAINKADIDISKA ENLQKIYNSCGFNTILISGKTGLNIDTLKEKLRGKTVAFAGVSGAGKSTISSLILDKKIE SGEVSQKTGRGKHTTRHTELHYNSDYFIFDTPGFSSLDIKLDKKDLCHYFREFENYLGQC KFLNCNHINEPDCMIKRKVENGEIPISRYENYKYLYQELKNKEEY >gi|281298008|gb|ADDO01000021.1| GENE 94 97717 - 99753 2241 678 aa, chain - ## HITS:1 COG:BH2504_1 KEGG:ns NR:ns ## COG: BH2504_1 COG0515 # Protein_GI_number: 15615067 # Func_class: R General function prediction only; T Signal transduction mechanisms; K Transcription; L Replication, recombination and repair # Function: Serine/threonine protein kinase # Organism: Bacillus halodurans # 1 335 1 326 343 271 46.0 3e-72 MISKVLGKRYEILEKIGTGGMGNVYKAHDRRLDRIVAIKILKLEYNDDSNFIRKFKRESL AAASISHPNIVSIFDVGSETIDDDVVHYIVMEYIDGKTLKELINEDGRLPEKRALNYALQ IAEALKMAHSKHIVHRDIKSQNIMVTKDDRVKVTDFGIARVADNTTVTATNAVMGSVHYF SPEQARGAKVDNRSDIYSMGIVLYEMLTGTLPFDADNPVSVALMQVQTNMPRPSDKVKSL SPGVDDLVLKMTRKDPNKRYKDVYDLIKDIKSILVNGRVIEPLSNYQKEDIDATVIENPI YQPSNEKRYVNRSSRDFPKDKEVIKKERKKKNSAAPAILGVFCAIIIIFLLAKVAPKAIA GLNNRDKVQEVELVDVVGALKGEAEAKLDSQGLKYKITTTEDSSKKSEEVISQDPAAGTI VKKGSTINLVINSLPDDVEIPQMKNYTLELAEDKLNNLGLAVGEVEYIFDEEIENEKIIY TEPQAGEKVARGAKVKIFISKGKDDEPVKIPSSYKGLSPEAPKAALEKLGLIVKIEEGYS GDVGKGEIYKIDPEQGTELAKGSTVTLYVSKGPQTEDIVDESEESDSNKGNREEQDSENN SSNSDVKTYSYKIKVPDDGKTHNIKAYRVKNSKGEEVNQDPIWNYNRDPGSTDNIKLIGK GVYEIYIDDQYVGQEVVK >gi|281298008|gb|ADDO01000021.1| GENE 95 99762 - 100487 887 241 aa, chain - ## HITS:1 COG:alr4516 KEGG:ns NR:ns ## COG: alr4516 COG0631 # Protein_GI_number: 17232008 # Func_class: T Signal transduction mechanisms # Function: Serine/threonine protein phosphatase # Organism: Nostoc sp. PCC 7120 # 7 238 9 237 240 150 36.0 2e-36 MIVVAATNVGKHRKNNEDSYYVDENKKFFILADGMGGHLAGETASGLATQILSKSLSRLG ENPKDSDIIEEIKKSIKDANEEIFNESKDIEQYRGMGTTLTLAYINNDELFFANIGDSRI YKINKVYKKIEQLTRDDSYVNYLMEIGEITEEEAKVHPKKNVLTKALGTNEKIDFEISKI KLEKSDIILLCSDGLTNMVSNDDILNLIIKNESTKIHEILIDEALKNGGIDNVTLILVYN E >gi|281298008|gb|ADDO01000021.1| GENE 96 100465 - 101496 635 343 aa, chain - ## HITS:1 COG:CAC1726 KEGG:ns NR:ns ## COG: CAC1726 COG0820 # Protein_GI_number: 15895003 # Func_class: R General function prediction only # Function: Predicted Fe-S-cluster redox enzyme # Organism: Clostridium acetobutylicum # 5 328 11 335 345 278 45.0 1e-74 MYLDELKDYLSSKSEKSFRANQLYTFFHKNKRWDIENSNLSKSTLKILQNDEINTIKILK IFQSKLDDTKKFLFTLDDSNVIEGVLMKYSFGYSQCISTQVGCRMGCAFCASTKDGLFRN LTPAEMLNQVYIVENYFGINVKNFILMGSGEPLDNFDNVIKFLKILHSKEGHNTSYRNIT ISTCGVVDGIYKLIDSALPINLAVSLHQTNDLERSKIMPINRKYNLNKLKKALEDYNLKT KNRITFEYTLIKGKNDTLKNVNELKEMFQNLFCHINLIPLNPIEEYNEQRPNRQDINKFK RLLEDASFNVTVRRELGSDIDASCGQLRASLLRGEFNDCCSCD >gi|281298008|gb|ADDO01000021.1| GENE 97 101577 - 102869 924 430 aa, chain - ## HITS:1 COG:CAC1725 KEGG:ns NR:ns ## COG: CAC1725 COG0144 # Protein_GI_number: 15895002 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA and rRNA cytosine-C5-methylases # Organism: Clostridium acetobutylicum # 1 428 1 439 441 284 39.0 2e-76 MNNIRQKALFIIDNVYNKGAFLEEQLNIIKQSNISDRDFTFIKNITTGVIRNRTYLDYVI KINSKIRFKKIHKIIAIILEMAIYQYYFLDKIPNYSIVDESVKLAKLYGNKGSSSFVNAI LRNIVSKDKEVVKIEDSIENLSVYYSHPKFYTKYFYENYGVELTKNLLKANNQEPDFVIR VNTLKTKKDHLYKLLKDENFNVIDGLVPDSLIIENPKNIFDTQAFREGFFYAQDFSSIKV SQILNPKKNSTILDLCAAPGGKSTHLGAILENTGQIVACDKSLYKLDLIKDNAKRLGVSN IKVSINDASKYNNDFEDKFDYCLVDAPCSAIGLYRKKPDIKWNRSLEDIKNLAQIQKNII NNAGRYVKKGGVLIYSTCSLSYSENEGVIKEFLDRNKNYKILTIEGKDILKLFPFDNYDG FSICKLQRLY >gi|281298008|gb|ADDO01000021.1| GENE 98 102866 - 103555 936 229 aa, chain - ## HITS:1 COG:TM1511 KEGG:ns NR:ns ## COG: TM1511 COG2738 # Protein_GI_number: 15644259 # Func_class: R General function prediction only # Function: Predicted Zn-dependent protease # Organism: Thermotoga maritima # 1 227 1 230 230 190 44.0 2e-48 MYYYGFEYFIYLIPGILLALYAQAKISSAYEKYGNINSKINISGAQAARKILDASGLYDV EIKMIGGRLTDNYNPSDKVLSLSKDVYENTSIASISIAAHEVGHAIQDKIDYKPLRFRES IVPMANLGSNLSVWFIIIGCFFSYFLTQIGVALFFFAVLFQIVTLPVEFDASRRAKLAIE DAGFLDQEEMKGTKEVLSAAALTYVGATLTAIGQFLRLLALTNGGRRRR >gi|281298008|gb|ADDO01000021.1| GENE 99 103558 - 104478 960 306 aa, chain - ## HITS:1 COG:CAC1723 KEGG:ns NR:ns ## COG: CAC1723 COG0223 # Protein_GI_number: 15895000 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA formyltransferase # Organism: Clostridium acetobutylicum # 1 301 2 305 310 240 47.0 2e-63 MKIVFMGTPDFAIPTLEKLNEISDVSLVVSQVDKKKGRGKKLLPPPVKEEAIKLGIEVFQ PENINSPTSIEKLNNIQADIFVVVAYGQILSKEVLQIPKLYCINVHASLLPYLRGAAPIN RAIIDGFEESGVSIMKMEEGLDSGDVALQKSLAIKDKNAHELENALAKMGAELIEEFLIN LDKGTIQFKEQDHSKMTYAKKITKSTFNIDFSKTSEEILNLIRGLDPYYGARAKYKDEII KIFKAYNYDYLGREEPGTILDNNKKLIIKTGDGAISVEELQIPGKKRMDIKSFLLGHNFD KNERLG >gi|281298008|gb|ADDO01000021.1| GENE 100 104475 - 104975 705 166 aa, chain - ## HITS:1 COG:CAC1722 KEGG:ns NR:ns ## COG: CAC1722 COG0242 # Protein_GI_number: 15894999 # Func_class: J Translation, ribosomal structure and biogenesis # Function: N-formylmethionyl-tRNA deformylase # Organism: Clostridium acetobutylicum # 1 147 1 143 150 130 51.0 8e-31 MAIRNIRTDEDTILRKKSKTVENFNDRLKVLVDDMFETMDSADGVGLAAPQVGMLKRLIV VDDRDEENQHRFYLINPVITRKEGSEVCREGCLSIPGKQGDVKRATDIDVTYNTLDGKEE KINCKDFLARIIQHEIDHLDGILYTDRAEKMYRIVQKDDNLEELEI >gi|281298008|gb|ADDO01000021.1| GENE 101 104987 - 107332 1899 781 aa, chain - ## HITS:1 COG:lin1938 KEGG:ns NR:ns ## COG: lin1938 COG1198 # Protein_GI_number: 16801004 # Func_class: L Replication, recombination and repair # Function: Primosomal protein N' (replication factor Y) - superfamily II helicase # Organism: Listeria innocua # 13 779 15 789 797 506 37.0 1e-143 MYCDIFIENNFNKIDNLYTYIFDKDIYLKPGMRVMVSFGNGTRVGIVLKIYSTYNGPYLS KLKNIIDVLDAEPIISEDLIELGLWMKDRYLLGYSKAFAPLLPPGDLKKIKKSVNIKKYP YGQDLEDLKKINLDKLYEDMDSNMKNLCNKLYKKGILKFSYLPITSIKIKTEKYLKKSNN FSMEKLQGLTKRQSQAVNYIIEKKDVSKKLLMKELKMSSTPIEALIKKDLVTEFDREVKT DKKYVGKVGTNHTLNEEQEDAIRSIEGTKKEVSILYGLTGSGKTEVYLNLAKIALDRGED VIVLVPEIGLTSQMIERFRNKFQDDVAIIHSKLSKGQRYEEYRKILNGDVHIVVGVRSAV FVPFTNCSLIILDEFHDSSYTFHDSLKYDSIEVAIKRMENKGKVVLGSATPDISHYYLAQ QGKYNLSCLKNRAFHGSRLPDTKIIDMRKELLMGNLSIFSRALKDKIKEKLDKNEQIILF LNRRGFSNFVSCRTCGHVIKCDNCDISMTYHKTNNRLICHYCGYTKSLPKICPSCGSKYI KQFGLGTQKVEEEVKKFFPNARILRMDKDTTSKKDSYENYYHMIKNKEVDVIIGTQMISK GFDFPDVTLVGVIASDISLYISSYKSSEDTFQLITQVSGRAGRSYKKGDVIIQSYNPNHY AIMYAADNSYEGFYKEELEERRTFLYPPFSKIINLEFSSVYEKLAIKWANAYLYNIGKII GNLDVQATKIIKLPKIKNMYRIHFSLKVFPQDEQMLLKVLRRVINISKINDKKDIDLNIK F >gi|281298008|gb|ADDO01000021.1| GENE 102 107362 - 108558 1437 398 aa, chain - ## HITS:1 COG:BH2510 KEGG:ns NR:ns ## COG: BH2510 COG0452 # Protein_GI_number: 15615073 # Func_class: H Coenzyme transport and metabolism # Function: Phosphopantothenoylcysteine synthetase/decarboxylase # Organism: Bacillus halodurans # 1 395 1 395 404 353 47.0 2e-97 MLKNKKILLGVTGGIAAYKSPAICSILRKQGAEVKVIMTEAAKKFISPLTMQTMSGNICY DQLFNQLTNMDVGHISLAKWADIIVVAPATANIIGKFANGISDDLLSTVFMASRSKVIIA PAMNTYMLNSPANQKNMKTLKDRGIIVLDTEKDVLACKDVGEGKMLSPKEIVDEIDTCLT AKDFEGKNFVITAGPTIEPIDPVRFLSNHSSGKMGYAIARRAKKRGANVTLISGPTNIEI PKVDNFVRIKTTQDMFDQVGKYFDNADVLIKAAAPADYKPKYYSKEKIKKNSSYDLNNIE LEKNPDIAKYYGSKKSKQIIVGFAAESTNIYEYAKEKLNSKNLDMIVVNNIVREGAGFSA DTNIASIIDKNLKIEDFNIMTKIELADKILNRISKLFS >gi|281298008|gb|ADDO01000021.1| GENE 103 108560 - 108850 462 96 aa, chain - ## HITS:1 COG:no KEGG:Tthe_1530 NR:ns ## KEGG: Tthe_1530 # Name: not_defined # Def: DNA-directed RNA polymerase, omega subunit # Organism: T.thermosaccharolyticum # Pathway: Purine metabolism [PATH:ttm00230]; Pyrimidine metabolism [PATH:ttm00240]; Metabolic pathways [PATH:ttm01100]; RNA polymerase [PATH:ttm03020] # 4 63 5 64 69 63 51.0 2e-09 MNIPSFKELMEKSDSRYELCMLVSKRSRKLVDGQKALVDTDMKKPVSVALEEVMEGKIIF GQEMSDKEYEEKIAVERLELEEKLRNEIKNSPQEEE >gi|281298008|gb|ADDO01000021.1| GENE 104 108850 - 109467 784 205 aa, chain - ## HITS:1 COG:CAC1718 KEGG:ns NR:ns ## COG: CAC1718 COG0194 # Protein_GI_number: 15894995 # Func_class: F Nucleotide transport and metabolism # Function: Guanylate kinase # Organism: Clostridium acetobutylicum # 4 193 5 193 209 191 51.0 6e-49 MSGGFLLVLSGPSGSGKGTVSQAIMKENKEIIFSTSVTTRTPRPGEVNGENYFFVSKTKF EQMVEKDELLEHAFVHTNYYGTPKQFVFDQIEKGEIVLLEIDVQGALQIKKKYKEAVFIF LIPPTMEELRNRLVKRDTESEEEINTRFKNAFRELDFVGEYDYFVINDKVSQAVIDIENI IAAEKLRVKRHKDIKSEVLKEKEKI >gi|281298008|gb|ADDO01000021.1| GENE 105 109487 - 110362 752 291 aa, chain - ## HITS:1 COG:CAC1716 KEGG:ns NR:ns ## COG: CAC1716 COG1561 # Protein_GI_number: 15894993 # Func_class: S Function unknown # Function: Uncharacterized stress-induced protein # Organism: Clostridium acetobutylicum # 1 291 2 292 292 178 36.0 9e-45 MKSMTGYGSYESQSDNYHLKIDMKSVNNRYCDIFIKLPALLFSYEDKIKRFIKKDVKRGK VEVFIKLNKLNIDDNSFDVDLPLAKNYYNASMDISNYLGLNNNLSIKDIITMPGVLVENE DNEVSKELEDLLFTTLTKALESFITSRLSEGQAIKEDFKTKLSSIKDIVAKVEELSPISL KENEEKLKNKLNNYLDESEIDRQRIATECFLLVDKLSIDEEITRLKIHLDRFNYIMNLEE SIGRKLDFLLQEINREINTIGSKSNNIDILNNVVLVKSEVERIREQVQNIE >gi|281298008|gb|ADDO01000021.1| GENE 106 110374 - 112785 2854 803 aa, chain - ## HITS:1 COG:BS_leuS KEGG:ns NR:ns ## COG: BS_leuS COG0495 # Protein_GI_number: 16080084 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Leucyl-tRNA synthetase # Organism: Bacillus subtilis # 4 801 3 802 804 916 55.0 0 MKDYKPEVIEKKWQDYWDEHQTYKALNDDDRGKIYLLVEFPYPSGQGLHVGHPRPYTALD IVARKRRYQGYNVLFPMGWDAFGLPTENYAIKNKIHPAIVTKQNIKHFKDQLKSIGFSFD WSREINTTDPEYYKWTQWIFLQLYKHGLAYKKESPINWCPSCKTGLANEEVIGGKCERCN TEVVRRVKSQWMLKITGYADRLIDDLDDVDYIERVKTQQKNWIGRSEGASILFPIKDSDE KLEVFTTRPDTIFGATYMVIAPEHPLLEKYKDRILNLDEINAYKEEVAKKSDFERTELAK DKTGVEIKGLKAINPISKKEIPVWISDYVLMSYGTGAIMAVPAHDTRDYDFAKKFGLDIV EVIKGGDISKEAYTDTNNGKLVNSEFLNGLEVKDAKEKMIKYLLENNLGNKKINFKLRDW VFSRQRYWGEPIPIVHCPKCGFVPVPEEQLPLLLPEVENYEPTDDGESPLANIKEFVETT CPKCGCHAHRETDTMPQWAGSSWYFLRYADPHNKDALASKDALNYWTPVDWYNGGMEHTT LHLLYSRFWHKFLYDIGVVPTKEPYVKRTSHGMILGENNEKMSKSRGNVVNPDDIVRDYG ADTLRTYEMFIGDFEKPVPWMETGVRGCRRFLDRVWNLSDILVDGDKYSESLEKLIHKTI KKVSYDYENLKANTAIAALMSLLNEFVANKNITKADFRTFLMLLNPVAPHITEELWEQNN LGGYLNESSWPVYDEEKTIDNIVEMPVQFNGKLRFTIEVSKDANVDQAREIAMKNEAYAK NITDKKVIKEIFVPGKIYNIVVK >gi|281298008|gb|ADDO01000021.1| GENE 107 112795 - 114180 1537 461 aa, chain - ## HITS:1 COG:CAC3260 KEGG:ns NR:ns ## COG: CAC3260 COG0017 # Protein_GI_number: 15896505 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Aspartyl/asparaginyl-tRNA synthetases # Organism: Clostridium acetobutylicum # 2 461 4 463 463 626 65.0 1e-179 MISIREIFKNTENYIDKEIEICGWIKTNRGSKNFGFIELTDGTNFNSLQVVYGKELGNFS EIEKYTLSSSLIIKGKLVESPGANQSFELQAKEIKLIGAADNTYPLQKKRHTMEYLRTVS HLRPRTNTFNAVFRVRSLIAYAIHKFFQERGFVYFHAPIITASDAEGAGEMFQVTTLPLE DIPKNDEGKVDYKKDFFGKETNLTVSGQLEDEAFALAFGNVYTFGPTFRAENSNTPRHAA EFWMIEPEMAFADLNVNMDVAEAMLKYIIRYVLENAKEEMKFFNKFIDKDLLARLDNVVS NEFERITYTQAIEILEKANKDFKFPVKWGIDLQTEHERYITEEVFKKPVFVTNYPKEIKA FYMTENDDKKTVAAMDLLVPGVGEIIGGSQREHRIDILEKKMKDLNMNMDEYDWYLDLRR FGTCIHSGYGLGFERAVMYITGMKNIRDVIPFPRTVGNANY >gi|281298008|gb|ADDO01000021.1| GENE 108 114310 - 116091 1582 593 aa, chain - ## HITS:1 COG:BH2856 KEGG:ns NR:ns ## COG: BH2856 COG1164 # Protein_GI_number: 15615419 # Func_class: E Amino acid transport and metabolism # Function: Oligoendopeptidase F # Organism: Bacillus halodurans # 3 592 8 598 598 495 42.0 1e-139 MLRYDIDEKYKWDLEKIYKNLNEFKKDYEEIKKGIEKLCKFNGKICQSAKSLEEFLKLDE EVERKLEKLYVYASLKSDENTRETANQELKQEAMNLYSEFIGKLSFVKSQILKEDYKLIE KYLEENENLKIYKHYFKDLFRNKNHILSDKEEKIIASYNKLGKVPENTYMLFTNADLKFP YVLKGDKKIEITNANFTHLQEDKDRNFRKEVYEKFYSTYKQFQETSASLLNGELINHYTQ AKLRNFESSRQMALFTNNISEDVYDNLISVINDNLDINKDYVSLRKEILNLNDLAFYDIY MPLVSDYNLKYSFEEAKEIILEALKPLGNDYVNNARRGFESRWFDVCPNEGKRSGAYSSG SYDTEPYILLNYNNTLDSLFTTVHELGHSMHSYYTNTSQPYIYSSYSIFLAEIASTTNEL LLLNYMLDNTENKKEKAYLLNHYVNSFKSTIFRQAMFAEFEHKANLLVGQSKPINGQILD EIYKDLNIKYYGKDIKVDEYISCEWTRIPHFYMFYYVYQYATGFSSAVTLSNNILHGSKK DTINYLDFLKAGNSAYPLEILKRAGVDMTKKDDLQKAMNIAREKLDELNNILK >gi|281298008|gb|ADDO01000021.1| GENE 109 116107 - 116820 550 237 aa, chain - ## HITS:1 COG:RSp1525 KEGG:ns NR:ns ## COG: RSp1525 COG0705 # Protein_GI_number: 17549744 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein (homolog of Drosophila rhomboid) # Organism: Ralstonia solanacearum # 23 198 210 391 569 112 34.0 7e-25 MTLKYKIQSLFNKMFKISKVSLSLITINIIVFLIMTLCGGSQNIDVLVKFNAMNKILVYQ GQWWRLICPTFIHIGFAHLLMNMYFLYIVGSIFENLYGSLRYLIIYIACGLMGNFVSYAF SNPYTISAGASTSLYGLFGLAIGLMIRYKDDKVLSSFGKSFLFIIVVNIFYSFLNPSIGV LGHFGGLLGGYLCSGIFPVLNKKMPKNKVIINICAFIIISILCILYGNLSVRYGLIK >gi|281298008|gb|ADDO01000021.1| GENE 110 116804 - 116992 208 62 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282882021|ref|ZP_06290662.1| ## NR: gi|282882021|ref|ZP_06290662.1| putative NADH oxidase [Peptoniphilus lacrimalis 315-B] putative NADH oxidase [Peptoniphilus lacrimalis 315-B] # 1 62 1 62 62 115 100.0 1e-24 MELNNKIYSPQTAREKTNFSIVMALEINNLYEASELIDSGICNFVGIGKADLRGNLLYDF KI >gi|281298008|gb|ADDO01000021.1| GENE 111 116992 - 117684 736 230 aa, chain - ## HITS:1 COG:PM0685 KEGG:ns NR:ns ## COG: PM0685 COG0491 # Protein_GI_number: 15602550 # Func_class: R General function prediction only # Function: Zn-dependent hydrolases, including glyoxylases # Organism: Pasteurella multocida # 6 230 5 233 233 192 40.0 4e-49 MEIKAISAFSDNYIWTIIKNNKLIFVDTGQAQPVLDFIKDKEPIAILLTHKHDDHVGGVI EIKKKYPDIKVYGPVETRDLNDITLKDGDNFQLLGENFKVIETTGHTDYHISYIMGDNLF CGDALFLAGCGRVFTGDYKKSYESMKKFANLDDNIKVYAGHEYGLSNLKFVKSIMNTEEV IRSYEEVLKKNKRGQITLPSTIGQEKKINPFMMAKSLEEFIKLRKEKDNF >gi|281298008|gb|ADDO01000021.1| GENE 112 118032 - 118448 209 138 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282882117|ref|ZP_06290758.1| ## NR: gi|282882117|ref|ZP_06290758.1| putative unspecified toxin/drug ABC transporter ATP-binding and permease protein [Peptoniphilus lacrimalis 315-B] putative unspecified toxin/drug ABC transporter ATP-binding and permease protein [Peptoniphilus lacrimalis 315-B] # 1 138 1 138 138 208 100.0 1e-52 MNYFINLDKKIYLYIEKISDNKKLVENWYTICRLLHNILYLPFIFFAPKFIGQIVKGFFH NNFPTDPSIMELIYSRSFYIDFLKVILTILLIFLSTYFRKLANKLDEYLNGYTLNYFKVI TTIIFIGVFLGFIIYKTK >gi|281298008|gb|ADDO01000021.1| GENE 113 118474 - 119550 1546 358 aa, chain - ## HITS:1 COG:CAC2884 KEGG:ns NR:ns ## COG: CAC2884 COG0216 # Protein_GI_number: 15896138 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor A # Organism: Clostridium acetobutylicum # 1 358 1 358 359 412 58.0 1e-115 MYEKLSVFEDRYNELEKSLMDINVINNSSLYQKTAIEHAELQPIVSKYREYKKTKENLND SKALLAEKLDDDMKDLVKDDISTNEKNLEKIEEDLKILLIPKDPNDKKNVMVEIRAGAGG DEAALFAGTLFRQYVRYAERCGWKVDIISTNEIGIGGYKEVVFMIIGRGAYSRLKYESGV HRVQRVPETESGGRIHTSTATVAVLPEVEDVEVEIDPTEIKFDVFRASGNGGQCVNTTDS AVRLTHIPTGIVISCQDEKSQLMNKEKAMKLLRAKLYDLKIQEQNEKNSAQRLSQVGTGD RSERIRTYNYPQGRVTDHRINYTTHQIVSINDGELDELIDALTAADQIKKLENIDKGK >gi|281298008|gb|ADDO01000021.1| GENE 114 119552 - 120382 316 276 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|225874212|ref|YP_002755671.1| ribosomal protein L11 methyltransferase [Acidobacterium capsulatum ATCC 51196] # 25 274 39 290 294 126 30 8e-28 MKIKEALSKSIVYLKEREFTDPLYESRLILSRILEKDISFIYAYLDLELEPKDEEKFFQI LKMRQSGQPLQYILKETYFMDKKFKINRGVLIPRKETEISVEVITEVVKKNKCKSFLEIG CGSGIVTIMVNLLTNINCSCLDISDLAIENTKTNIKNLGAKVQVFKSNLFENVTGKFDII YSNPPYIKTGEIKNLQDEVKNFEPISALDGGESGLEFYKKIIKQSTNYLNDNGFLIFEIG YDQKDSIENLMSKDFNIYFIKDLQGYYRVAVGKRRC >gi|281298008|gb|ADDO01000021.1| GENE 115 120418 - 120621 282 67 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|167464107|ref|ZP_02329196.1| 50S ribosomal protein L31 [Paenibacillus larvae subsp. larvae BRL-230010] # 1 63 1 63 65 113 76 7e-24 MKKEIHPEYKEATVTCACGNTFKTGSVKENLKVEVCSECHPFFTGKQKFTDTGGRIEKFN KKYKRNN >gi|281298008|gb|ADDO01000021.1| GENE 116 120728 - 122488 2141 586 aa, chain - ## HITS:1 COG:CAC2889 KEGG:ns NR:ns ## COG: CAC2889 COG1158 # Protein_GI_number: 15896143 # Func_class: K Transcription # Function: Transcription termination factor # Organism: Clostridium acetobutylicum # 97 569 3 468 483 442 55.0 1e-124 MANENKNSITLKNKPINDLKNIALSMGLKDDESFNRTDYYNYIVYGTKPKIKSYTKKDLI NLSIKDLREIANELDIASSYKYKKEPLIELIVEKYKNSDLDTDSDLTSKTTVELREIAKE LNISKPYLYKKDQLIKVIEEKYEENLEYKDDIYSEDQDDKDKELYTPDENLEEDIEDNEL EDEIDKIEESHAKKFGIELDEISNNATEAVGKMDDAKYVCGILELHQDGYGFLRVSNFLP SEGDIYVSPSQIRRFRLRNGDKILGIVRPSKDGESYNGLIYINEVNDKKPNLATNRPYFE NLTPIYPREKIKMEFDPKDIATRVIDLICPVGKGQRGLIVSPPKSGKTTLLKKIAKSIEK NYPEIELFVLLIDERPEEVTDMQRSVKGQVVYSTFDETPKNHTRVAEMVLDRAKRLVEQG KDVVILLDSLTRLSRAYNLITPSSGKTLSGGLDPLSLHKPKRFFGAARNIEEGGSLTILA TALVETGSRMDDIIFEEFKGTGNMELHLDRKLSEKRIFPAIDIYKSGTRKEELLLNQDEL NFAFNIRNAMSYNSSNEVTEVLLDEMTKTINNKTFVRDSKIIKNLS >gi|281298008|gb|ADDO01000021.1| GENE 117 122500 - 123465 1272 321 aa, chain - ## HITS:1 COG:BH3783 KEGG:ns NR:ns ## COG: BH3783 COG1494 # Protein_GI_number: 15616345 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins # Organism: Bacillus halodurans # 1 318 1 317 321 329 53.0 5e-90 MDRNLALNLARVTEAAALSAGKWLGKGDKNGADGAAVDAMRRMFDTVEIDGTVVIGEGEI DEAPMLYIGEKIGTKSGEEQVDIAVDPIDGTNSVAAGGTNSIAVLAVAPKGCLLNAPDIY MDKIACGPKAKGAIKLDDSPSENIKRVAEKLNKNIDEITVAILDRPRHEKIIKEIRKLGA RIKKVSDGDIVTAIECCFEESGVDLIMGRGGAPEGVIAAAALKCLGGDFQGRLHPTDEKQ EARCRDLHSDLNKVYEIDDLVKGNEVIFSVTGISKGEILDGVKYYENNIATTESLVLRLP SGTQRFIKSTHRLDLKPDYAK >gi|281298008|gb|ADDO01000021.1| GENE 118 123468 - 124121 680 217 aa, chain - ## HITS:1 COG:CAC1347 KEGG:ns NR:ns ## COG: CAC1347 COG0176 # Protein_GI_number: 15894626 # Func_class: G Carbohydrate transport and metabolism # Function: Transaldolase # Organism: Clostridium acetobutylicum # 1 215 1 215 215 239 60.0 3e-63 MKLFIDTANLEEIREINSWGVVDGVTTNPSLIAKNGGIVKEVYKEILSIVQGPVSLEVNS DDYKAMIEEARDLSKLGKNVVIKIPITEEGLKACSILSKEKIRVNITLVFSASQALLAAR SGASFVSPFVGRLDDIGQDGISLIRDIATIFKEHQITTQIIAASIRSVDHVKKAALVGAD ISTVPYKIFKEMIVHDLTDKGITKFKEDYNKVYKKGE >gi|281298008|gb|ADDO01000021.1| GENE 119 124124 - 124600 663 158 aa, chain - ## HITS:1 COG:BS_yacN KEGG:ns NR:ns ## COG: BS_yacN COG0245 # Protein_GI_number: 16077159 # Func_class: I Lipid transport and metabolism # Function: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase # Organism: Bacillus subtilis # 2 156 3 157 158 177 56.0 7e-45 MRVGLGFDVHKLVNDRDLIIGGIKIPHKLGLLGHSDADVLIHAIMDSILGAMAKRDIGYH FPDTDNKFKNIDSKILLSKVYDLMVEENYKIINIDCVVSAQKPKLAPYIDSMRKVIAEIL NTQIENISIKATTTEGLGYVGEELGISAQAVALIEKEK >gi|281298008|gb|ADDO01000021.1| GENE 120 124597 - 125298 346 233 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764767|ref|ZP_02171821.1| ribosomal protein L15 [Bacillus selenitireducens MLS10] # 9 231 6 226 234 137 36 3e-31 MINGNFVTAFIAAAGMGKRMNAPINKQFLSIEGVPILAQTIKKIEASKYVDFILLIIKSS DLNYLSQIISKYKINTNYKICYGGNERQDSINNGLMNMPKSTDIILTHDGARPFVCVEKI DQAIESVFETGACTLANKVKDTIKVSYDGKNADYTPNRALLWQVQTPQVFLADVLKSAYK QAYSEGYYGTDDCSLVEKTGRKIKLIDNSYDNIKITTKEDLIFAKAILRKKDL >gi|281298008|gb|ADDO01000021.1| GENE 121 125306 - 126745 1562 479 aa, chain - ## HITS:1 COG:CAC0506 KEGG:ns NR:ns ## COG: CAC0506 COG0768 # Protein_GI_number: 15893797 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Clostridium acetobutylicum # 11 451 11 460 482 253 34.0 4e-67 MKASENKRILVLLIFLIILLLAPIVYLTYFTIFKAQDAIKNPANKRPMMAENAVKRGNIY DRDGNVLAYSTGEKFQYQRVYNYPVIYSHIVGYSNKIVSKYGIEKEYNSYLLGKEGSKLL KTFKSIFNKKLDLNMGDSLILTTNTELQKKTRSVLGENNEKGSVVIMNPKNGEILSMVSL PDFNSQNIAQDMAQINKNNNGALFNNSTLGKFAPGSVFKIVSADAILESGISQNYNDKGT EKIDNGREFKNSTGKAYGRINLKTAFTHSVNTYFVRKTVDVGLDIYSNVCQKFMINKKVD FDLPLETSTWDYNRQGFDKTALGSAGIGHDNILVTPLEMCMITSAIANDGVMMKPHLVKA INGSDGKNILINNPEVLSECTSKENANIIKNMMVNVVNNGTGTEAYVKGYQVAGKTGTAQ LNIQEGTNNAWFVGFAPANDPKIAIAVVIPNVSDYGGEVAAPIARKLIKFALDNIDFDQ >gi|281298008|gb|ADDO01000021.1| GENE 122 126732 - 128000 1157 422 aa, chain - ## HITS:1 COG:CAC0505 KEGG:ns NR:ns ## COG: CAC0505 COG0772 # Protein_GI_number: 15893796 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Clostridium acetobutylicum # 40 407 38 397 400 202 37.0 1e-51 MINFLLKNRRPGNLLLIFELLSIFLLFFYNNKHIDRYIAILFVGLVLIIYISNLVLSRVS TGDNYIFLIVSMLMTIGIVTIYRISPTLGLRQLVWALIGILTFYLTYFVIRVMRRLENLT TLYLGFSILFFLLTLIFGKELHGSKNWIVFGNDAFSIQLSEITKILVMFLIASFYTKFQD KLERNGFKHSSYYLMIVMYVFIGFLFLQKDLGTAVVFMGIYTCLQFVYDKDRTSLIVNIC LMIFGAIVSYFLFSHVRTRVTIWLSPLGAIKGRAGQVTEALFAIGEGGFFGSGIGLGYPS LVGVNESDFIFSVICEEMGVFMGIGIIMLFMLLIYRAVKIALNQEFIFYRILALAVAILF AIHAFLNIGGVIKLIPMTGLTLPFVSYGGSAMISSFVALGILQFTGEDISYLYSRSSNNE SK >gi|281298008|gb|ADDO01000021.1| GENE 123 128012 - 128452 305 146 aa, chain - ## HITS:1 COG:CAC0504 KEGG:ns NR:ns ## COG: CAC0504 COG1716 # Protein_GI_number: 15893795 # Func_class: T Signal transduction mechanisms # Function: FOG: FHA domain # Organism: Clostridium acetobutylicum # 5 136 20 151 159 71 32.0 6e-13 MFELISQVLKYVFIIIIYLFIFSILRLMYLDIRQMGTRGTSLENSYLKVVNRLDSLSFKM QEYYLLGGSVTLGRSSKNDIVIKDKFVSKNHLNITERNGIFYLEDLNSANGTYLNGEKVD AGTLIELQNGDKIGVGFIQFIFVENR >gi|281298008|gb|ADDO01000021.1| GENE 124 128632 - 129234 692 200 aa, chain + ## HITS:1 COG:SPy1607 KEGG:ns NR:ns ## COG: SPy1607 COG2137 # Protein_GI_number: 15675489 # Func_class: R General function prediction only # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 1 196 1 198 258 70 30.0 2e-12 MIINKITYKKNEFLVEFNNGKSVSIVEDSLVKFNLYKGLEVSDDFDNSLYEQDQLTRAFI LACRYLSNIKSSKQIKDYLYRKKISNDNIEKTIDLLTEKGFLDDYSYAVSYIHDAQILKK HGSKKIKYSLFEKGISKNIIEKASAEIDDELEYNNAHELFLKKANNDYSFENLNKVIRFL LARGFDYSIIKEVINYEKER >gi|281298008|gb|ADDO01000021.1| GENE 125 129218 - 129511 398 97 aa, chain + ## HITS:1 COG:SP1535 KEGG:ns NR:ns ## COG: SP1535 COG2827 # Protein_GI_number: 15901379 # Func_class: L Replication, recombination and repair # Function: Predicted endonuclease containing a URI domain # Organism: Streptococcus pneumoniae TIGR4 # 8 78 6 76 99 67 47.0 7e-12 MKKNDSYYLYILECADKSLYTGITNNLEKRLEKHNKGLASKYTRARLPVKFLYTYKLKDK SQALKYEILVKRQSRAKKLKIIGGQIDITSLMKEKEK >gi|281298008|gb|ADDO01000021.1| GENE 126 129512 - 129844 326 110 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282882070|ref|ZP_06290711.1| ## NR: gi|282882070|ref|ZP_06290711.1| hypothetical protein HMPREF0628_0756 [Peptoniphilus lacrimalis 315-B] hypothetical protein HMPREF9131_0274 [Peptoniphilus sp. oral taxon 836 str. F0141] hypothetical protein HMPREF0628_0756 [Peptoniphilus lacrimalis 315-B] hypothetical protein HMPREF9131_0274 [Peptoniphilus sp. oral taxon 836 str. F0141] # 1 110 1 110 110 171 100.0 1e-41 MGQIKELIISNSDYLALTIGTIILGVIFTFIANFMAKELKFVKYIPGLVLFFIGMFSIFL VTDKLFEKSSLDNLIIFVTGVSSGLISLIFALIIGICSSSKNRYRRNDRR >gi|281298008|gb|ADDO01000021.1| GENE 127 129855 - 131264 1187 469 aa, chain - ## HITS:1 COG:no KEGG:Dhaf_2195 NR:ns ## KEGG: Dhaf_2195 # Name: not_defined # Def: hypothetical protein # Organism: D.hafniense_DCB-2 # Pathway: not_defined # 26 463 31 477 495 135 25.0 4e-30 MKKLFLIFILLLLSACSIINTDRTSIQTPEVAKPPIYGKWTISKYINSYKTNDDNFQYKD IIGSDVLFASDEAMVSGDYIINPSYRTKRVNVDEYLYKKYNLNYKNLNIENKDAFAISLK QKDISNYEIIKVSDDTAFIIRNNFIFQISKTDDDLTEDQLKVDISRNREDSSGLTIENLS DKADIGLMLGLKEPNQSKLPSFNYKTLYIKFSPEGVENVYESPNILLPRKDGFYQVEIQR VSKKDEISDNLLIKKRVDPLNDRQAKEKIYQIEDNNILKNINFISEDIINIENISVEKNL RKLRIYDINNIEKKEPLQIAYFISSDDNKALIKETNDKLKDNDNIGIYRENGYWKLMGRD NASNGYFIKDFDLNIVLPNSINKYNVLNIPMTDLKKFNSKIKDAFISPDNKYLITLENTM LKIYNIGNGNIVSNAIFEREIGQDTSVIMSQWSMGRYSKLWQKEITRKN >gi|281298008|gb|ADDO01000021.1| GENE 128 131261 - 132667 1316 468 aa, chain - ## HITS:1 COG:BH1945 KEGG:ns NR:ns ## COG: BH1945 COG0642 # Protein_GI_number: 15614508 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Bacillus halodurans # 192 459 190 459 462 158 34.0 2e-38 MKNRIGKRLVKSYLLLIITTIVILDIFLLIGFKTFYYTSVENELKSRLSFSLNFYNRNYS DKNLEDIILEDNDILWTYTNAEVQVLTPKGNIIIDSIGAISKEPINSQDFLLAKSGTMKA WVGKCPTTKGLVMAITGPIINNSGKTIGYLRFIASMEEANLAILKTMLTLVVFSIVLSII TAIVSILISRSIVRPITDLTEVARKMADGQYKIKARNWEDDEIGELAKTLNTMSEEILKK EQIKNDFISSISHELRTPLTSIKGWAVVLKDSKGQEDIMSEGLTIIENESDRLSKMVEEL LDFSRFISGRMSLEKELFDIGQTVRDVCKQMNPRANSNKIDFQTEILETPCVTIGDENRI KQLLINIVDNAIKFTSENGWVKVQSFDENNNFVILVSDNGCGMNKKDLEHVKEKFYKGKH SKSHSGLGLSISDEIVKLHNGSLDIFSELNIGTTVKITIPIIKEEKAE >gi|281298008|gb|ADDO01000021.1| GENE 129 132668 - 133357 986 229 aa, chain - ## HITS:1 COG:CAC1700 KEGG:ns NR:ns ## COG: CAC1700 COG0745 # Protein_GI_number: 15894977 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Clostridium acetobutylicum # 4 226 5 227 232 186 42.0 4e-47 MAVKILLVEDEEPIRKFVKINLEREGYTVFEAGSGEEGIDIARSKQPQIVVLDIMLPGVD GFAVCKVLRKEFPNLGIIMLTAKAEDYDKIMGLQYGTDDYLTKPFNPTELTLRIKSLERR LEPEEEIDENYIIQEPFKLDYYQRKFYKNDEEIELTPTEYQIMKIFMENPKKAMNRDEIL KIVWGNDFIGDSKIVDVNIRRLRAKIEENPAKPEYIETVWGLGYRWQGE >gi|281298008|gb|ADDO01000021.1| GENE 130 133531 - 134982 1673 483 aa, chain - ## HITS:1 COG:aq_2023_3 KEGG:ns NR:ns ## COG: aq_2023_3 COG0516 # Protein_GI_number: 15607007 # Func_class: F Nucleotide transport and metabolism # Function: IMP dehydrogenase/GMP reductase # Organism: Aquifex aeolicus # 201 482 1 283 284 365 63.0 1e-101 MKFFGEGLTFDDILLMPAISSVLPNQVDLTTNLTRKIKLNIPLMSAGMDTVTEYRMSIAM AREGGIGIIHKNMSIQEQALEVDKVKRSEHGVITDPFSLSKNHTIGDASELMERYKISGV PIIDDKGRLEGIITNRDIRFETDNKRKIKEVMTSENLITGTPGISLEEALKILKGHKIEK LPLVDKNNILKGLITIKDIEKHEQYPHSARDESGRLLAGAAVGVTKDVLERVEALNKSRA DVIVIDTAHGQSTGVLDTIREIKSAFPDIQLIAGNVATYQGTVDLIKAGADCVKIGIGPG SICTTRVVTGIGVPQVTAIMEAAKAAKEYDIPIIADGGIKYSGDVTKALAAGGNAVMMGS LFAGTEESPGEELYVEGRKFKTYRGMGSLGAMSSGSSDRYFQSETKKYVPEGVEGRVPFK GKVGDIIYQLIGGVKSGMGYCGAANLEALRENTQFVKVTQASLQENHPHNITITREAPNY SVK >gi|281298008|gb|ADDO01000021.1| GENE 131 134995 - 136197 1434 400 aa, chain - ## HITS:1 COG:CAC3078 KEGG:ns NR:ns ## COG: CAC3078 COG4856 # Protein_GI_number: 15896329 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 1 399 1 403 403 102 26.0 1e-21 MKSNNRREWMFRILSLLFAILLWAYVRNESNVLEIKTIRNVPVTYEGMDDLKDRGYIIIS PKETKINVTVEAYSNTMPYVKDSISAKVDLKDYKDGEFSLPISVSSIQSDVKIKRFDQTT IPFKIDKRSSQTFYANIKTLGKPADDYSLGKIADSERVTISGASTYVSQIEKVEAIVNVG NLKKTDYVKADVKAFDADGREIDNLTIEPSTIQVEVPILKSKSVPIKLNIVGDIPKNVNL DKFFVEPETVTIIGNSDLIDSIDQIESKEITLDQIREGSNTISLILPKNISLVDPKLTFK VIDGDNQLGNNGKNLVIRKENINLLNTDAKFSYNISLDSDIILKYNGQTDRDLTTEELNL NVDLKDANNSGEYPLNYVLPQGFNLVSINPKVVHIDIKEK >gi|281298008|gb|ADDO01000021.1| GENE 132 136187 - 137020 844 277 aa, chain - ## HITS:1 COG:BH0265 KEGG:ns NR:ns ## COG: BH0265 COG1624 # Protein_GI_number: 15612828 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus halodurans # 8 277 7 272 274 241 49.0 1e-63 MHNLNNYLAFLNLRDIIDIAIVAILIYFILNLIRNTRAEQVFKGIIILLAFMLISQFFQL YTVNWIFSKLITGGLLALIIVFQPELRRGLEFLGRTSTIKNNFGPESDKIPATVSEICKA VASLSRQKIGALIIIEKKVGLTEIIETGTAINGNVSSGLLINIFIPNTPLHDGAVIIKGN IILAAACFLPLSDNKSISKELGTRHRAGIGISEKSDCLSIMVSEETGSISTAEDGAISRY LDIDTLESKLLEIYSPQLENESPLLKKLRKWSEGNEK >gi|281298008|gb|ADDO01000021.1| GENE 133 137022 - 137570 247 182 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282881983|ref|ZP_06290624.1| ## NR: gi|282881983|ref|ZP_06290624.1| conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] # 1 182 1 182 182 262 100.0 8e-69 MIFSALIFSIILIYLSKGSFKNILNFNYQKIEVALCGILIIFLINFFTIYDFSSISDFFV KKYFYFTILALFFIIISLLFNYEVRGMIVIAFGLFCNTLPIIFNGKMPVSLSALSKINND KVFRIISEGLSLSHGVFENPKLYILSDIFPINPIFGQGKVLSIGDFIVSIGVILSLYKIS RR >gi|281298008|gb|ADDO01000021.1| GENE 134 137681 - 139870 1521 729 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|228002590|ref|ZP_04049584.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; SSU ribosomal protein S1P [Anaerococcus prevotii DSM 20548] # 5 693 1 685 686 590 43 1e-167 MIKKLEIYLADYAGFCGGVKRACKLAFAAADEGVYCLGDIVHNEVVINDLKEKKVKTIEN TQVYNSKVIIRSHGVPKEDLEKLRYNNNEIIDCVCPKVKKIYNIVEKYYKKGYNIIIVGD ENHPEVKGINSYCNNEAIIFNKEEDLKVPVGKTIVVAQSTSNEKVFDYLTNLIKNISKSE ILVYNTICDATFNRQNSIRKLAKIVDAVIVLGGKKSSNTKKLAEVAKESCKNVFLIQSIK DIDINILKKFNKIGITAGASTPDKVIKEAVSSMENFDKGEMMEAIDNSFKRIKKGEIVTG EVLYVTDNEVMVNLGYRSDGIISKEELSKNTDAKPSDLYKQGDEIEVFVLKMDDGDGNVV LSARRVEDMKVWDEIEESYNNHEIVTAKVINQVKGGLTASLDGISAFIPASHVTVKFQRD LSKFVGDDFQCEIIDFDKRKRRIVLSRKNVLMRELEEKRSQIFESLHIGDVIEGTVQRLT NFGAFVDIGGIDGLVHISELSWNRVKHPSEVVSAGDKVKVQVLSLDEEKDRIALGLKQTT EKPWDKFINAVKVGDVVKGKVVNILDFGAFVRLEEGVDGLLHVSQICREHIEKPQDRLEI GQEVEVKVIEIDQENKKISLSIKALLEPIEDDENKEKTEKPKVKKERPRRPKENRVKKQI QEPKEDEFNTTIGDLLGFSIGDSSFDVVASEEENKEESSDVEETTENKESTTNENEQVEV KEEDNNSEE >gi|281298008|gb|ADDO01000021.1| GENE 135 139839 - 140426 520 195 aa, chain - ## HITS:1 COG:BH1635 KEGG:ns NR:ns ## COG: BH1635 COG0204 # Protein_GI_number: 15614198 # Func_class: I Lipid transport and metabolism # Function: 1-acyl-sn-glycerol-3-phosphate acyltransferase # Organism: Bacillus halodurans # 1 182 3 187 195 124 37.0 1e-28 MYRFLKIILYVVFKLLYRVEIVGIENIPKENNLIVAGNHKSNLDPVFVSVFFKRHIYWMA KKELFNNKLFGAFLKKLGAFPVAREEVDIKAIKTSLRHIKNGQVLGIFPEGTRVKKKNLD IIKQGTALIAHKSKALILPLYIEGNYIPFKKMKLIYRKPVDLSSLGKIKNEEYELISKDI MRRVYGDKEIGNLPS >gi|281298008|gb|ADDO01000021.1| GENE 136 140430 - 141053 233 207 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15639271|ref|NP_218720.1| bifunctional cytidylate kinase/ribosomal protein S1 [Treponema pallidum subsp. pallidum str. Nichols] # 3 202 37 279 863 94 28 3e-18 MQIAIDGPAGSGKSTVAKKIAEKLNIIYIDTGAMYRAITLKLKDIDKKFYEEACNNTNIE FINNKIFLDGKDVSSQIRSEEISKLTSDISKIDFVRKKLVSIQKEIADKNSVVMEGRDIT TVVLPDADYKFYLNASPEIRAKRRTLQLKEKGLNADYKEIIRDIKKRDNNDIKRENSPLK VADDAIVIDSSNLTAEESIEKILSYIR >gi|281298008|gb|ADDO01000021.1| GENE 137 141113 - 142300 970 395 aa, chain - ## HITS:1 COG:CAC1849 KEGG:ns NR:ns ## COG: CAC1849 COG2081 # Protein_GI_number: 15895124 # Func_class: R General function prediction only # Function: Predicted flavoproteins # Organism: Clostridium acetobutylicum # 13 395 1 391 393 343 49.0 3e-94 MKIAVIGAGPSGMMAAFAAASNHEVTIFEKNEKLGKKLYITGKGRCNLTNYVDASDFFKN VISNKKFVYSSIYSFDPFMTMDLFNSYGLQLKVERGNRVFPMSDKASDVIKTYEKMLKER NVKIFLNTPCETIDKKDKFIINGKYSFDKVIIATGGISYKETGSTGDGYKFAENFNIKLK ERKQALCGALTNEPLDLSGLSLKNVEILAFSEGKLIAKEFGEMLFTHIGVSGPIILTLSS KINRLSKVKLYLDLKPGLTYDELDKRILRDFDKFPNKDIRNALINLLPRDLIFYVLKKSN ISSYKKVNQITGQERDRLKSSIKKFDLDYKCLEDINRAIITSGGISVDEINPHTMESKKV EGLYFVGEVLDIDALTGGFNIQLANSTAYLCGSNI >gi|281298008|gb|ADDO01000021.1| GENE 138 142300 - 142845 526 181 aa, chain - ## HITS:1 COG:BH3285 KEGG:ns NR:ns ## COG: BH3285 COG0500 # Protein_GI_number: 15615847 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Bacillus halodurans # 21 181 21 190 190 129 40.0 3e-30 MIAKEKYYEIVDEILKNDFKGKSAVDATMGMGNDTEKLLKVVGEKGKVFAFDVQDQAINY CKEKFKNINNLEILKISHEFIDILENFDLAIYNLGYLPGSDKSVTTMAMSTVISLMKATQ LINKGGIIIVVSYLGHENSKEERDSLEKFLKSLDQKKFIVEKREFFNQINNPPIVYVLEK K >gi|281298008|gb|ADDO01000021.1| GENE 139 142842 - 143549 831 235 aa, chain - ## HITS:1 COG:CAC1851 KEGG:ns NR:ns ## COG: CAC1851 COG1187 # Protein_GI_number: 15895126 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases # Organism: Clostridium acetobutylicum # 2 234 4 236 236 230 51.0 2e-60 MRLQKFMAHAGAASRRKSEELIKEGRVKVNNNIVTEMGLEVDPNKDRVYLDGKRLNLENE NIYIILNKPIGVVTTSSDEKGRINVVDLVDETKRVYPVGRLDIDTTGLVLLTNDGTLANI LMHPKNNIYKTYIATVEGKPNARELNLLRNGLSLRDLKTSKAKVKILKNFDKDSIIEISI HEGKNHQVKRMFSYIGHEVKKLKRISIGKIELGNLEIGNYRYLNNEEVKYLKALK >gi|281298008|gb|ADDO01000021.1| GENE 140 143549 - 144070 533 173 aa, chain - ## HITS:1 COG:CAC2060 KEGG:ns NR:ns ## COG: CAC2060 COG1386 # Protein_GI_number: 15895330 # Func_class: K Transcription # Function: Predicted transcriptional regulator containing the HTH domain # Organism: Clostridium acetobutylicum # 3 170 17 184 202 130 43.0 1e-30 MNKDKLKSIIESLLFLWGDPISIKDIEKCLKVDKKDLKMVLDQMKSEYEIESSGLRLIEV NESYQLSTKPENFDFIKDFVRESAEKNLTKPSLETLSIIAYKQPVTKMEIEDIRGVNCDS TIKGLLDSSLIEISGTLDRIGHPNLYVTTDFFLKKFGIKNLEELPSLEDLRRD >gi|281298008|gb|ADDO01000021.1| GENE 141 144063 - 144788 657 241 aa, chain - ## HITS:1 COG:CAC2061 KEGG:ns NR:ns ## COG: CAC2061 COG1354 # Protein_GI_number: 15895331 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Clostridium acetobutylicum # 1 235 1 243 249 123 38.0 3e-28 MEYNIVLERYQGPMDLLLDLIRKNEIDIYDIPIFEITEQFLDYMEKANKINLELTSDFIL MASTLLEIKSKMLLPKIKFDDDDEEEDGEDARKELVEKLLEYEKYQQLSGLLKKNEEYET RAFYRKKSEMPDFSDKDLLKDLKVNDLSKAFMNILMRNKNKVVKSIYRENFSVETAINVL KSRLLIKNKFYFTKLLEDYPSREELISLFLGLLELIRNGILSAKQTENFTDIFIELRNLD E >gi|281298008|gb|ADDO01000021.1| GENE 142 144767 - 145411 532 214 aa, chain - ## HITS:1 COG:aq_1853 KEGG:ns NR:ns ## COG: aq_1853 COG1994 # Protein_GI_number: 15606892 # Func_class: R General function prediction only # Function: Zn-dependent proteases # Organism: Aquifex aeolicus # 13 202 8 216 217 133 44.0 2e-31 MKFQIANINFSSIIINILALMIVIIPHEISHGYVAYWCGDDTAKYDGRLSLNPLKHIDPI GLICMVVLRFGWAKPVPINTSNFTKNKRLSTFLVSIAGVCMNLLMGLIAGIFLVYVYYKN LFIGPLLEAIFWYSIMLGVFNFLPLPPLDGSKVLLSFLPYKYHHYFYKYEKYFYLILVVL LFNGAISKLIGPIIDFIMEEILKLGVIIWNIILF >gi|281298008|gb|ADDO01000021.1| GENE 143 145392 - 146213 1095 273 aa, chain - ## HITS:1 COG:lin2067 KEGG:ns NR:ns ## COG: lin2067 COG0005 # Protein_GI_number: 16801133 # Func_class: F Nucleotide transport and metabolism # Function: Purine nucleoside phosphorylase # Organism: Listeria innocua # 3 270 4 271 272 306 54.0 4e-83 MDKNVMDAVDAIKSKIDADADIAIILGSGLGNFADLIEDKTEIPYKEIKGFASSTVKGHE GKLIFGKILSRNIIAMKGRIHYYEGMGMDKVVFPTKVLKGLGIKNLIVTNASGGVNKSFK ASDLMLINDHINFAGINPLVGPNDDNDGPRFPDMTYTYDKNLQEIAKNCANKLNIDLKSG VYMYFTGPTYETPAEVRMARVMGADAVGMSTVPEVIVARHLGLKVLGISCITNMASGILD RPLNHKEVMESAKKVEKNFQELVKNIINEIPNC >gi|281298008|gb|ADDO01000021.1| GENE 144 146216 - 146749 711 177 aa, chain - ## HITS:1 COG:BS_yqkG KEGG:ns NR:ns ## COG: BS_yqkG COG0494 # Protein_GI_number: 16079418 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Bacillus subtilis # 5 165 6 168 185 139 50.0 2e-33 MSQIERTMSSQSIYEGRILNLRVDTVEMEGKKYTKREIVEHDPAVCILALTDEGKILMVR QFRKPVDQELFELPAGLVEVDEEPVKAALRELEEETGYYAKKCEYIGEFFTSPGFCNEKI YLFLAEDLEKKEQKLDDFENIAVEEITLDEALKQIKFGDIVDAKTIIGLLLYKNLRG >gi|281298008|gb|ADDO01000021.1| GENE 145 146749 - 148416 1665 555 aa, chain - ## HITS:1 COG:SP1202 KEGG:ns NR:ns ## COG: SP1202 COG0497 # Protein_GI_number: 15901065 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA repair # Organism: Streptococcus pneumoniae TIGR4 # 1 551 1 550 555 328 34.0 2e-89 MLLELNIENYAIIEDMKINFQKGLNVITGETGSGKSIIIDALGMVLGGRANKDVIKAGKD FCHIEAIFTTYDKDIKNLLESMGIEVDDYLIITKDIGKNGPSITRINNRVITSSNLLKII PKIIDVFAQHESISLMNHDNQRNLLDDFCDNKHKENLLLLKNLVHEINEIKKDYENKLDS STNKDREIDILNYQINEINEANLTSYDDKELEEDYLKLNNVTSTAEALSKTINILKSNYE GFNVEDGLDSAIGEVNSILKYNNELKDDYDELEDVRFRLKELINSIESYMNNLNFDGQKL HELESRLDLVNRLKSKYGKSIDEIDIFLESTQKRLDFLLNSEKNLEQLKKIIQEKEEKAL YLAQNISQERGKLAEDLRKKISNELEELNIKNAKFKVSLSPKKLSYDGIDNVEFLISSNL GEEYKPISKIASGGEMSRIMLAFKSIIANKDNIKTLIFDEIDTGISGKTAQIVGNKIKKL SKDRQVIVISHLPQIISLANCHFLIEKEIKNKKTISKIKMLNQDERVMELARLVGGINIT DAAINAAKEMLGVKH >gi|281298008|gb|ADDO01000021.1| GENE 146 148426 - 149226 651 266 aa, chain - ## HITS:1 COG:CAC2076 KEGG:ns NR:ns ## COG: CAC2076 COG1189 # Protein_GI_number: 15895346 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted rRNA methylase # Organism: Clostridium acetobutylicum # 2 240 4 242 267 252 52.0 5e-67 MSKIRADLLIVEKGLVSSREKAKRIIMEGKAFVGTNRIDKAGQLLDPDSNIHIKKDSLEF VSRGGYKLKKMIQKHHIDLKDKICMDIGSSTGGFTDCMLQNGSKKVYAVDVGYNQLDYKI RIDKRVVVMERTNIRFLDREKIMDNIDFISIDVSFISLELVLPKAVELAGEKCQFVALIK PQFEAGKDKVGKGGIIRDSKVHLQVLEKIYEFVKSLNLSVRDISYSPITGTEGNIEFLIY MDNYSEDNRSFDLKAIVNEAKVKLTK >gi|281298008|gb|ADDO01000021.1| GENE 147 149226 - 150095 984 289 aa, chain - ## HITS:1 COG:CAC2080 KEGG:ns NR:ns ## COG: CAC2080 COG0142 # Protein_GI_number: 15895350 # Func_class: H Coenzyme transport and metabolism # Function: Geranylgeranyl pyrophosphate synthase # Organism: Clostridium acetobutylicum # 13 287 9 287 289 188 39.0 8e-48 MKNLEELNTIIGELDSYLSNTFTYVDESLAKIYESMKYSLFSGGKRIRPLLCMITYNELA ENPTLDKILPFAATLEMIHTYSLIHDDLPAMDDDDLRRDKPTNHKVYSEAVAILAGDGLL NMSMEVISKYMESLDDIDELKKCIKALKFIYNCSGVLGMIGGQLLDIDYLNEQYNEELCE DMYSLKTAALLKASIVTGAIMAGCEGEIITKLKEFGQYIGLAYQYKDDLLDMNKDLKNGQ KTMLDFYSAEEVENKIKSLTNKGLESIKDIEFKDDILKDFCLALIKREY >gi|281298008|gb|ADDO01000021.1| GENE 148 150097 - 150303 415 68 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282882031|ref|ZP_06290672.1| ## NR: gi|282882031|ref|ZP_06290672.1| exodeoxyribonuclease VII, small subunit [Peptoniphilus lacrimalis 315-B] exodeoxyribonuclease VII, small subunit [Peptoniphilus lacrimalis 315-B] # 1 68 1 68 68 84 100.0 2e-15 MQRDYESSLKELESIIKDLESKDISLEDSIKKYERGIELYRYLDNVLKEYEGKVKTIIKE NKDVLEGD >gi|281298008|gb|ADDO01000021.1| GENE 149 150287 - 151891 1352 534 aa, chain - ## HITS:1 COG:CAC2082 KEGG:ns NR:ns ## COG: CAC2082 COG1570 # Protein_GI_number: 15895352 # Func_class: L Replication, recombination and repair # Function: Exonuclease VII, large subunit # Organism: Clostridium acetobutylicum # 1 339 3 342 399 268 45.0 3e-71 MKAIKVKELNSYLKKIVSMDFLLSNIAVEGEISNFKAHENGNLYFSLKDDFSRINAIIFY KNAINLDFKMEDGLKIIAKGSVNYYEKDSQITLYISEIISHSSGNLYAEFVRLKKKLSNE GLFDPGHKLKIPTFPKTIGIITSASGAAVKDIVNMLKMRNNLANIIIFPSLVQGEGAPSD LIEGIKYFNDREDIDLIILGRGGGSFEDLFCFNDENLAKAIYNSNIPIISAVGHEVDYSI SDFVADMRAATPTKAAEIAIISKKELSDNLKSDYELLNSSLNKIIFDMREKLSNYGNLLR IFCPLKSILVNKDNLKDRFNRLNISLKSSVFNNQKILEYGVKSIKSYDFKIEERKVYLED KKLTLVSGLSQKINIETNKLNYYYKLLNYNMFQLLKSSSISLKNFKYYLKNYKVSDEILK KNLYLQALESRFKAMDFKTDFRYKKDYLYNKKYILNNLSLNIIKNERNKLNTLIYNLNTL YNDINKVKVFLKDGSLLKDIRQINEGDFLNIHLKNGVAKAQIKDIEGKNYAKRL >gi|281298008|gb|ADDO01000021.1| GENE 150 151872 - 152291 446 139 aa, chain - ## HITS:1 COG:BH2785 KEGG:ns NR:ns ## COG: BH2785 COG0781 # Protein_GI_number: 15615348 # Func_class: K Transcription # Function: Transcription termination factor # Organism: Bacillus halodurans # 1 133 1 130 134 96 36.0 1e-20 MGRKNARVGAMQLLYSMELNKDFSQENIEKFFENYDFSESEQSYINSVISELVNNLDSVD KVLSDNLQGWTIPRLATVDREILRVAIFEFLYRKDIPVEVSINEAVEIAKKYSSEESPKF VNGILASILKNLKDESDKS >gi|281298008|gb|ADDO01000021.1| GENE 151 152296 - 152679 619 127 aa, chain - ## HITS:1 COG:CAC2085 KEGG:ns NR:ns ## COG: CAC2085 COG1302 # Protein_GI_number: 15895355 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 14 124 11 122 131 74 45.0 4e-14 MDNKYLIDESSVEGNVKISDQVIATIASVAAEKVDGVVKMQSNLKSQVSDILSAKNLNKG AKVNLGEKEALVDIYVTVEYGKKIVDICKEVQRVVKQAIENMTDLSVVEVNVHVSGIAVE KEEKLRA >gi|281298008|gb|ADDO01000021.1| GENE 152 152786 - 154180 1058 464 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|145634045|ref|ZP_01789756.1| 50S ribosomal protein L21 [Haemophilus influenzae PittAA] # 2 442 3 442 456 412 46 1e-114 MLDTINNFLSSIVWGWPMIILLVGCGVFLTIKLNFIQIRKFNFTMKNTLLKVFVKDNDKK EGDITAFQAVSTALAATVGTGNISGVSLAIATGGPGAIFWMWFSAIFGMCTKFSEVVLAV TYREVNSKGQYSGGPMYYIKNGLKNKWLACAFALFAACTSFGTGNMTQSNAISQTLHTAF NVNEKLTGIVLVLIIGIVVIGGIQRISQVTEKLVPFMSLFYILGGIIILIIEADKIPAAF SLIFRSAFSPKAAFGGAVGVGLKETVKMGIARGLFTNEAGLGSAPIAHAASNTDHPARQG LWGIFEVFTVTIVVCSITALTIIVSGLWDSGLQGVDLTAAAFESGFTGGKYIVSIGLVLF AFSTILGWAFYGEKCFSFLVGEKIGKYYKYAYVLTCYLGATGSLQIIWNLSDTLNGLMAL PNLIGLIMLSKVVLLMTKDFFKDPYYIRKSPEEYLNILPEKYKF >gi|281298008|gb|ADDO01000021.1| GENE 153 154289 - 155695 1122 468 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|145632256|ref|ZP_01787991.1| 50S ribosomal protein L27 [Haemophilus influenzae 3655] # 3 445 1 442 456 436 49 1e-121 MQLMLEKLNGLVNGIVWGWPMLILLVGCGIILSFKLRFIQLRKFNFTMKNTMFKVFRKDT SAKKGELTAFQAVSTALAATVGTGNIAGVALAIATGGPGAVFWMWISAFFGMCTKFAEVI LAVTYREKHSNGEYSGGPMYYIKNGLKMNWLAILFAFFGAFASFGIGNMTQANAISQAMS TNFHIDTKITGIILVILTGIVVIGGIKRIALVTEKLVPFMSIFYIIGGLIILILEANKVP SAICLIFNSAFNPKAAFGGVVGTSLKLTMKMGIARGVFTNEAGLGSAPIAHAASNTDHPV RQGLWGIFEVFTDTILVCSITALTIMTSGLWNSGLEGADLTAAAFESGFTGGRYIVSIGL LLFAFSTILGWAYYGEKCFTFLVGSKIGKYYKYLYVPTCYLGATGSLQLLWNISDTLNGL MAIPNLVGLILLSKVVVILTKDFFKNPDYIRNNPSEYLDILPEKYKIS >gi|281298008|gb|ADDO01000021.1| GENE 154 155929 - 156873 810 314 aa, chain - ## HITS:1 COG:CAC2484 KEGG:ns NR:ns ## COG: CAC2484 COG4129 # Protein_GI_number: 15895749 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Clostridium acetobutylicum # 3 311 2 311 320 137 33.0 2e-32 MNKIVLIRTLKTAFAALFSIILAQEIGLEYSAAAGIIAILNVFATRKETLIGGLKRTLSA AIALTISAICFEVFAYNTWVFALYLLFFVPVSFLLKLELGIGPSSVLVTHLLAHGHIDAQ IITNEMALMVIGTSFAILTNLYAPSERKRLNKLIKDIDDQMKFILNLFGRVLTEELNIRF YDQHFQKLKLDIEEAIKIASIERDNIVIGSLEILLKLKLRNDQAFILLDMYNNILDIPPE FKEGNIMSHVLKTTSIQLTEYDAIKEIRKNIKSIKENMENLSFSEDYDTLIIRSALMQII KDLDRFTEISKDIF >gi|281298008|gb|ADDO01000021.1| GENE 155 156954 - 157685 669 243 aa, chain - ## HITS:1 COG:HI1644 KEGG:ns NR:ns ## COG: HI1644 COG0101 # Protein_GI_number: 16273533 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthase # Organism: Haemophilus influenzae # 1 243 1 243 269 184 37.0 2e-46 MNILIKVTYDGTNYHGYQVQNKLKTIEGELSKAINNTLKKETKIYSAGRTDRGVHALGQY VNFYTDTTIDLGNLPRVINFHLPDDISVISAKEVPFDFHARFSAKEKIYRYVVYNNKYRN AIYHNRAYQYPFSLDLSLMNESFKYLIGQKDFKSFMGRDAIVKDTIRTIYSIKVKKDNKF IYFDFQGKSFLKNMIRIIMGTAIEIGRGKKDPIFMKEVLEKQNRKYAGPTAPSCGLYLMN ILY >gi|281298008|gb|ADDO01000021.1| GENE 156 157682 - 158479 869 265 aa, chain - ## HITS:1 COG:CAC3100 KEGG:ns NR:ns ## COG: CAC3100 COG0619 # Protein_GI_number: 15896351 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, permease component CbiQ and related transporters # Organism: Clostridium acetobutylicum # 1 245 1 247 267 275 61.0 6e-74 MFKDITIGQYFPGESIVHRFDPRLKIITMIFFIISLFFINTFIPYIFVAIYLLVIIKIAN LPLKVVLKGLKPLRWILLITFVINIFFLPGEPLLKLGFLTISKEGLKTACLMAIRLMFLV LGTSLLTYTTSPIELTDGIEALLKPMKKIGVPSHEIAMMMTIALRFIPTLIEETDKIMKA QMARGADFESGNIIKRSKNLVPLLVPLFVNSFRRADELATAMEARCYRGGVGRTKMKVLV LEKYDYAIFLGNIVFFLILILATRL >gi|281298008|gb|ADDO01000021.1| GENE 157 158472 - 159335 419 287 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 23 262 146 380 398 166 37 9e-40 MSFIEVRNLQHLYSPNTPFEKLAIDDINLDIELGEFIGLIGHTGSGKSTFIQHLNGLLMP SRGSIKADDITITSKSQNLTDLRRKIGLVFQYPEYQLFEETVVKDIEFGPRNLGLDDAEI DKRVRKAMNSVGLDYEKYKNRSPFELSGGLKRRVAIAGVLSMQPKVLILDEPTAGLDPRG RDEILEEIKNIHAQGNITIILVSHSMEDVAKIATRLIVMDKGHVLMDDVPRKIFTREEEL KKAGLGIPQITSFMRALKRKGLDVNTDCITVEEANIALVEYLRSKDV >gi|281298008|gb|ADDO01000021.1| GENE 158 159323 - 160156 1032 277 aa, chain - ## HITS:1 COG:CAC3102 KEGG:ns NR:ns ## COG: CAC3102 COG1122 # Protein_GI_number: 15896353 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, ATPase component # Organism: Clostridium acetobutylicum # 1 277 5 280 281 339 59.0 4e-93 MIEIKDLYFSYENEGENKNPRNVINGVNLNIKEGEFVALLGHNGSGKSTLAKLINALFIP KKGQVLVDGFDTKDDKSVWDIRSRAGMVFQNPDNQLVATVVEDDVAFGPENLGIESSEIR KRVDKALESVNMEAFKKNSPHLLSGGQKQRVAIAGILAMSPTYIILDEPTAMLDPSGRKE VMDTVLKLNKEQGKTIILITHYMDEAAMADRLIIMEEGSIILQGKPREVFSHVDEIKNIG LDVPQVTELAFDLKKQGFNIRNDVLTVEELVEQVCHL >gi|281298008|gb|ADDO01000021.1| GENE 159 160459 - 161085 690 208 aa, chain - ## HITS:1 COG:BH2532 KEGG:ns NR:ns ## COG: BH2532 COG0461 # Protein_GI_number: 15615095 # Func_class: F Nucleotide transport and metabolism # Function: Orotate phosphoribosyltransferase # Organism: Bacillus halodurans # 1 208 1 209 210 230 55.0 1e-60 MKEIAKILLDINAVTLSPQKPYTWASGIKSPIYCDNRLIFSYPKERTIVENSLVELIREK FPQTEYIMGTASAGIGHAAIVSDIMKLPMGYVRSKGKDHGKKNQIEGKIVKGAKTLVIED LFSTGKSSIDAALALKESGFDVIGIVSIFTYNLKSCQENFQNYNLKKSSLTDYDELLSIA LERAYIKEEDLKKLQKFKINPSDPSWMD >gi|281298008|gb|ADDO01000021.1| GENE 160 161088 - 161789 756 233 aa, chain - ## HITS:1 COG:SA1047 KEGG:ns NR:ns ## COG: SA1047 COG0284 # Protein_GI_number: 15926787 # Func_class: F Nucleotide transport and metabolism # Function: Orotidine-5'-phosphate decarboxylase # Organism: Staphylococcus aureus N315 # 1 231 1 229 230 229 51.0 5e-60 MKDLIIAMDFPSKEKADEFLINFKGQKLFLKIGMELFYKEGPQIVKEYKKLGHKIFLDLK LHDIPNTVKSATKSLIDLDVDMINFHISGGFNMLKEANEVIINSNKNIIALGVTMLTSND ENIMHKEIKIDNNLSLNDVILSYANLAKNAGLQGIVCSALEVPKIKENLGENFVTVTPGI RPKSSQSDDQKRVVSPSDARNLGSDYIVVGRPITKSENSLDAYRKIKKEFLGE >gi|281298008|gb|ADDO01000021.1| GENE 161 161793 - 162905 1421 370 aa, chain - ## HITS:1 COG:BS_prfB KEGG:ns NR:ns ## COG: BS_prfB COG1186 # Protein_GI_number: 16080582 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor B # Organism: Bacillus subtilis # 9 365 7 363 366 379 55.0 1e-105 MEQNIYLDKEKLENAISSLDELALSLDVNGLRDKIKELNKKQMEQNFWDDNEKAQKIIKE LNSYQRKVNPYDEISDLIEDANDILLLMEMEDDYSSYDEFKKLILNIEKKVSEYKLETLL NGEFDENDAILSIHAGAGGTEAQDWASMLLRMYVRYATNKGFKVETLDILKEDEAGIKSV TLKISGEHAYGFLKGEKGVHRLVRISPFDANKRRHTSFSSVDVFPDIDGDIDIEIKDEDL KIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVQCQNERSQIQNRERAMQTLKAKLLALA EEERKEKIDDLQGNYSQIAWGSQIRSYVFQPYTLVKDHRTNCEVGDVNKVMDGDLDPFIN AYLQSNATKE >gi|281298008|gb|ADDO01000021.1| GENE 162 163151 - 168880 6031 1909 aa, chain + ## HITS:1 COG:no KEGG:FMG_0048 NR:ns ## KEGG: FMG_0048 # Name: not_defined # Def: hypothetical protein # Organism: F.magna # Pathway: not_defined # 1 1560 5 1624 2427 1059 43.0 0 MKNYLKRTATLLLSACMVLTIPLQAFAYSTDLIPLSNKSDPINTLAVTPYKLKDNQKATD LLIEKDQPDIYTYRTNYKVQKDDDYKKNYQPYVASVGADISEEDKAKVNKEIKLPDLKGY IKPQDTFSINYNEIKSKAENGSTSIKDDINNHQGEQDFEYKAKKAKVKVKHIYQQLKDFN KYGNKDGSENYFVGEQTGNTGSIMRVQPLDKEHTIGFEPETDFIKTQVPEDTDDFELEYR YNRAYNDIVFDCGEGTPIPARTLYYEQKIPKIADGDIPTKAGMTLKGWKPSVDLKANING ANTVFKKDEIMKDSSGNPSLNLDLNLEMPAEKVTFIAVWERKKQADYTVLFWAEKSDYPK NAKLLDRYDFVGTHVYKDQSVGKRPELEKEPVKDVEFTDLDSGRLQRIYNGEKVTVNDPK STKKMEIPYLNKFYVYNKELTNKENADIKNPNLVKEVSATGETVYNIYYDRQVYNLWFTK GSFDGSFYPTLTRNGEVLGKPGAPYHFKARFNQSLVGMWPNDILEVSGFKDGCNSLGWSI LQDVNKRNYRDTPPYRLTANEFVDYPELSKNGLAKEIPTDQDVPAKKAGPFDIAFGIDQH YQVFPIHVDFLLDGFKDGEQNYDYDLYMIKSDTNNAGYQFTPPALQGFTAKGENKGKKKI EETLDNYDVEDKNDDERNVKTPFPKVYYRFNGKRRQKGKMYFMWAFPKIKSLKEDEKEDP KKPIEDLEDDENEDSGDEDQVFDQNGYIAFEYARNKYEIKLNNDPSKEKEASAYKDTDKI QVFYDYPLKKLNLDKVHKPEKPKEIPEQWEFKGWAMDTKGQKLISKNNETMPARNLVLYA QWGEPDYKWKVTFDANGGTLSNINTENLSLEKKTIKEGDIGQEKKVTYPIVGEKDGDKEV FTVVQRQKLRLPQKPKRKGYEFRGWELIRYKKDNDGNYTDVLDTVYSKNYRNVSGGPELY AFGNDVVSPIYLRAIWLPTNTVDVEVKHYFLDEDFNLDRSILKNPIVKKIEDKRVNYLAT TIGDQQNEEWILATDEELNEHNNSDIYNEYKDYNDRVKLNNTYFQTFRVEPENILDQKTG KTSKNPKFKNNIFKFFYRRYKTRKYKVNYVDVRAKKDIESATDPSKKEKLIRDNSITQQE KVISQCRDFDVKNYKPIPGWVLAKDEKPQKELFYDIDENTNKFLGINGSGSDEINFYYQD ARVIECQNPNDPVPNGYVRVTFKASDGGCFGKDVQGKEIKEINYDVIKGLKFGLLSVPDL LKNREDISDKHYISPDLGREFIKWDSSLLNKNTPIEENYTFTAKFDWSEIEANCLTTTES FIDPENRWTNNFAPKISDIMRLVTWSGKDSGTLANVEFVDENGTSLTDEKLFNLCSEKNS SDKDELVRTVKIKALVQFGTSEDKKVIEIPIKVYKNVYEANTSGEKPLFLTDAEKNDLKG INYVKVTVDPTRKAYNKDSKIYYVNPKAWVNISEIDINNSEEEPKLVNWLSDSEAGEAFD FKLRHKFTKDTTITAQFDDQKPKKKNKIENPLTPDKPIVPDIPSIPDTPDKPENPGTKEK PELPEQPDKPSDKPKPNESDDNKQNPSNRQKPEDSDDSEPDFHLTPGDENPNYPKDLEPK IQFIPKDNDPNYPVIDKDNNFEYSVIADSFNNQKYTEVNKEANFQNKVEKNPTDNSYFKE VGYIQGFNGNFRPKDGLTRAEAAQILANVLIEDGYKYQNDFKISYKDIGEAWYTKAIKIV SQAKVFSGYNDGNFKPQKKITRNEWISTLKRFQELGNSNGNHMNLKTGHWAISDVEAAYK EGWLEIYEEGKVKYEGDKFITREEVVSISNKAFKRFVDKDYIAKNGKNLINFKDVNENMW SYADIICASNTFLYQGNAIRAHANKDNKNSFNIDTNEFEIKQKKIRKSA >gi|281298008|gb|ADDO01000021.1| GENE 163 169300 - 170553 1392 417 aa, chain - ## HITS:1 COG:FN1423 KEGG:ns NR:ns ## COG: FN1423 COG0426 # Protein_GI_number: 19704755 # Func_class: C Energy production and conversion # Function: Uncharacterized flavoproteins # Organism: Fusobacterium nucleatum # 1 400 1 403 405 547 62.0 1e-155 MFTVRKVVDDLYYVGGSDRRLELFENLFPIPRGIAYNSYLLLDEKTVLLDAVDWSIARQY IDNVVRVLDGRPLDYLVIHHMEPDHCGTIDEMILRYPNLKIISSEQGFQIMRQIGYHVKE ENCIVVEEGDTISFGRHELFFIEAPMVHWPEVIMSLDTTNGVLFSADAFGSFGALDGQIF ADEVDFERDWLDDARRYLTNIVGKYGPFITNVLKKAATVDIKVICPLHGPVWRKDLGWFI NKYATWASYTPEVEGVLICYGSMYGNTEFAAQSLATALCEKGMTNVKCYDVSKTHYSYLI SEAFKYSHIVLASPTYNLGIYPNMKNFIMDMAALNLQNRTVGIIENGSWACTVGDKLEEF LDENCKLMDVLPERITLNTSLNAVQLNDIDTMANAILESMKNLRELHAKLEQGKGEK >gi|281298008|gb|ADDO01000021.1| GENE 164 170563 - 172491 2432 642 aa, chain - ## HITS:1 COG:FN1424_1 KEGG:ns NR:ns ## COG: FN1424_1 COG1960 # Protein_GI_number: 19704756 # Func_class: I Lipid transport and metabolism # Function: Acyl-CoA dehydrogenases # Organism: Fusobacterium nucleatum # 1 376 2 377 377 563 76.0 1e-160 MYKTTDEHEALRKSIREFAEAEIKPNAFAMDQANEFPDEIVKKMGENGWMGIPYSKEYGG AGLDAISYAIAVEELSRVDAGCGVILSAHTSLGSYPIEAFGTEEQKKKYLVPLAKGEKLG AFGLTEPNAGSDAGGTETTAELDGDYYILNGGKIFITNAPKADFYVVFAVTTPGIGTHGI SAFIVEKGWDGFTFGDHYDKMGIRSSSTAELTFNKVKVPKENLLGQEGQGFRIAMQTLDG GRIGIASQALGIAQGAYEAALKYAKERIQFGRPIAQQQAVAFKIADMATKIRAARLMIYS AAEMKTNHEKYSMEAAMAKTYASETALFCANEALQIHGGSGYMKGMEVERFYRDAKITTI YEGTSEVQRVVVANNIIGKTKRKKGKTAVIQKSQEPITGVRKREIITADSPKEAVDILVQ NLKKDGYDFSVGIPMDTPIYDAERVVSIGKGIGSKENLPMAEQLAKAAGAAIGCSRPTAE ALKILPLERYVGMSGQKFNGNLYIACGISGAIQHLKGIKNASTIVAINSNAGAPIFKNCD YGIVGDMFEIMPLLAEALGTEDKKEAPPMKKVRRSKPRKLAPNYSVMVCPGCGYEYDPDL GDPNGEIDPGTEFERLPDDWSCPNCLEPKENFIEAEFTEDRK >gi|281298008|gb|ADDO01000021.1| GENE 165 172810 - 173826 1312 338 aa, chain + ## HITS:1 COG:BH3254 KEGG:ns NR:ns ## COG: BH3254 COG3641 # Protein_GI_number: 15615816 # Func_class: R General function prediction only # Function: Predicted membrane protein, putative toxin regulator # Organism: Bacillus halodurans # 1 337 1 334 336 270 53.0 4e-72 MISFLRRKNVSLSPKVYFVDALGAMGFGLFATLLVGTILNSFGTSLNIKFLSETIWPLAK EATGPAISVSIAYALGAPNLVIFASTIVGIAGNELGGPMGVYIATLFAVEFGKIVSKETK IDIVITPVVTVLVGVFVANLIGPTMNAIMTGIGNIIMIATEQQPFIMGIVVSVIVGIVLT LPISSAALCMMLSLSGLAGGAATIGCCCQMIGFAVISFRDNGFEGLLAQGLGTSMLQMPN IVKNPKIAIPSILASAILGPLATVVFKMTNIPIGAGMGTCGLVGQIATFTSMSEVPFFKL LSLIIILHILLPALVSYIIYIPLRKINWIKDGDLKLEL >gi|281298008|gb|ADDO01000021.1| GENE 166 173943 - 174797 1104 284 aa, chain - ## HITS:1 COG:no KEGG:Dtox_4298 NR:ns ## KEGG: Dtox_4298 # Name: not_defined # Def: copper amine oxidase domain-containing protein # Organism: D.acetoxidans # Pathway: not_defined # 1 177 1 160 452 103 34.0 9e-21 MKLKNFLFVFILAGLLFTCQVFASRDIKILVRGDEVKSDVMPVIENNRTLVPIRVISESL GYVVFWDNDKREVKISKDDKILLLKIDSKLISLDDGKKKNEVSIDSPAKIIKDRTFVPLR AVAELFGEKVNWDDNTATVFVGDIPEAISIEKKNQSESAEKKVNLDNKISVKERNPESYL KALQENVSDRGAISFDKKSATFNLTPKDLAANFYRYLRDNDSIEKDFKNAFNEEISVIKD YSLQIKDDNGVSYGLRITDPDNTNKTLVFIRDGKVIENNLKSTN >gi|281298008|gb|ADDO01000021.1| GENE 167 174913 - 177309 2317 798 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_4319 NR:ns ## KEGG: Pjdr2_4319 # Name: not_defined # Def: cellulosome anchoring protein cohesin region # Organism: Paenibacillus # Pathway: not_defined # 582 793 555 759 761 120 34.0 2e-25 MKNRILSFVLSLLFLLTLLPINIFAYETKINQQRLVVEPQWNEKDIQDVYNLLNKDNKEF ESLFDFEAMKNLYKERGKNSFQTLAKSANKNGGLEIENLRAANLRINNVQQNINPDILKI KHELIVKVNLKNFINQNGHKNMDIFEGNSPKIVIQKLKYDENGREVSVGAPITKTINQAG EVSLGETEAYYVVNNEIRFYHYAHDFQSEKFKFNLKEFYSNGSYKEGNKQLVFDYDIYQV AASKIKLELPDGVELKENPIGLFTGRTKDRKEKVVRYYLPKAGGETIIRSDSGNQRLLNP SIYLPNLDDVYLNTIKLEGQTNENTISCVLNDDTSRTFKVSTSGNFVDGWTIILLPENSF TVTFDAKGGSPTPRPQVVEKNGTAREPEAPKKENFSFQGWFKAGEESKFNFSTPISGDTR LEAKWKQVIYGPFNPDGPGGEPQIPDTDKDQYVTVMFEAGANGKLIMPGISPETLVKKVA YKVLKDTLWTETEITFPQTQGDPKDKYELDKWDKNIPSTGMISGAETFKASFKEKVAPNP PTPPTPPTPPQPNPQPEPSPQPYIPEKDEDLHSGSEPHWIPVVHRQEEIEKGIHYIYIYG YEDKTIRPEGKLTRAEAVAMLLRLIGEDLSNKAKLDFVDTPSAWYNGALNAAMKKKLLIC DGNKLRPNDPITRGEFAYALSKVDSMNDVKSPYMDIRGHVFEDAINQEYGNGRIKGYPDG TFKPDNNLTRAEAATLLNNFAKRKVTKSGLIYVKDKVKVFPDIDESHWAYYEIVEAGHTH RYERPSHTLDETWIEILE >gi|281298008|gb|ADDO01000021.1| GENE 168 177367 - 181224 4615 1285 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282882044|ref|ZP_06290685.1| ## NR: gi|282882044|ref|ZP_06290685.1| hypothetical protein HMPREF0628_0798 [Peptoniphilus lacrimalis 315-B] hypothetical protein HMPREF0628_0798 [Peptoniphilus lacrimalis 315-B] # 1 1285 1 1285 1285 2220 100.0 0 MKRKIISSLLLLFMLMSTIIAQPVLAKSEGNVVGQKLTFNAKDFGLSEYESTQTKREQSY RAKNPRRVKRYARLFSNGVSFRSAQPDSQLGFDPKTEFLFPLRLQILTKNSKAGTEAGGI NLNDIGLKDGFKIKINQIDSRGNIKNVFESDKIIQDGLTATDAKTGDAKGIVTFKYAAGS EDVTEGRRTAGEAAENVRIYDDYGKAFSYEIVADDAVEYNIQLRVRKTNADPAYNKNYIH IELQLIQIANSTMKNEVVDKTGKDIRSELKDGQKLIAYFGRIQGGANYFIDFSKTQTVLR KDFGDQKLIALNDLSIISKNRYHLRRAEALSWNDDGYVTLKDKNDKDIAFKVETFYDCVK GGLVKFIKQDKVIIPDDPGTGGTPTPCPSTHYEVNFKAGANGKLKDGMKTRFFVQKGLTW KEAKEAEPKLTVPVPVPINDFKLDDWYKVVNGKVDKTKTATKGLPKDETKKVETATYQAE FIGKNKVVDVTPTDPKVTPELPKKPNPDFDPNKKEDPNSNPKTIPDDDYELITFKAGDNG FLSADKIKIKVYAVLKTSTWAEAEKATPKMDVPSADSTTLKLTGADNYTFTKWTTDGTTA TDLPQGTAKIADLTNKTFVAKFEANEIKRGKETTEPIPEGYIRLKFSAGDNGTIATDNKA DLIIDVLEKANKKVGDYTKPTITPNVGYSQKKGADAWDKADTLEINSTNATNKELTVTAQ YDKKKSIIDITPKPPTPPTPGTEPEDPKGPTIPDTNTPDPDYIVVAFKAGANGKIKGGNK FYAILKDMTWKQAKEYTPDTTNGEAKLVVPSEFEPDADYGFVNWDPILPTDDSKKLGELV QAGQTKLTYIAKFDKDIKEDDNKDEEGYLRVVFDGNGGTLKGSVKNSYKVRVGVTGVAGS ESSKKTYADLERFKKTDFVAKDNNTDDGITPPIDQKFKEWRKGDETTKLEGTTEIKGESK SVITVKAQYESETALVVPSITQTVNPALPADEKDDDNTAKKVLKVNFANDPTTGATYTIV KEDGTEVATVPNPQKGDNYVEIPNTVVDKDIVKVKVTKPGMNEKTSSTIILDLAGPTFTD VKIVKNTPYLATITGKVTDTPAGVYWVKIKGTGTNPTETFVKIGTDGTFKIDMPITTGDE YTLTAKDTLANISEKKTSTSDVDKNNSFDKSKIKKVTIEQGYTGEKEILVFAEEGATVKL YKFNGETETVLGEVTISSGMGVLSISDANGLAANERIYAIVIKDASNNDISKFNTPAIMT VRPVTVENVTPPTDQPQPAAEGTRP >gi|281298008|gb|ADDO01000021.1| GENE 169 181273 - 185529 4771 1418 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282882085|ref|ZP_06290726.1| ## NR: gi|282882085|ref|ZP_06290726.1| hypothetical protein HMPREF0628_0799 [Peptoniphilus lacrimalis 315-B] hypothetical protein HMPREF0628_0799 [Peptoniphilus lacrimalis 315-B] # 1 1418 1 1418 1418 2597 100.0 0 MKISNRICAILLAGLMLVPSTSLWAEEDTQNKSSQSYQTRDAGDSSDSSDSIPIAVQSIV SAKGLNGDFPWNTYFKNMGYGQIGVYKQWITYFKDTSSYQADPNEGSHFSTGYEDGTRPK NIPTLTWSFDIPPLTGEFYGFHTENNFSRRKDIPATYEESTGWIQEKAHHSVLNKGELYG VYTMETKIMEYNKPILNVIYKDPYGDELSNADKGRLDEMVPKELRVKFLTSDSELNKDID SFKLPKSPGEYNLWDIGEQERAYVFDSYAFTKEVPKVDVQDDRGYSLLNTPIWRSTFDDN RRVKSIEAKYEAGKGGEVKLELMPEILDVPLDKSNNPKPVPDGYKRITLDANGSTLGNKE VKGKIEGGNYDKKQQAYIDVRDDLKWNDYKLLQKLRDVVAIGENGETQNEEHPWKGDGLD RLFIGNRQNKVEEITLKADYTATALIMPKEDVPENPGNNYVTLTLHGTSQTDKKERGDGK LFRDKDGNTETKGNQANFWLRRGTPIDFDTIEKIKQATDGFYPKADSPFMSFKAWHTDER ATDANMLGEIKDGQYKASLMAQDRDINLYASYKDENMASKWKDYLKVKDINVLQRRILNP EDEDIKNISDKEVKENVIKEINDLWKGAVEKREPNADETFPEEIQGDIPIKKVEDITEPK RDAQTKGEKKGKIRVTFTDDSTLDLDNQKLIIKHHPVDINSKEIVIKAGESQRSVQVKDL DPSYKGGSVSINVEKEKGKEVYEEVGKATLDGSGSYLIETNRPLEAGEKYQIQIKHPAYK LSGLLWTKWVQLNTGPLKESYDLGNNLYDKLGKDNTLDKTKKDDLKKAIDKAKKLINDDG SPKVTTPNKENQKALDDAKKAIDEAIKNLGGNDLLTLLPYLQVKALAVWENEKPSSDDFK AQVGLNDSVESDPNKVKIEETWKKVKDNITFEVPTTLDTSLKEPKAMKMITSQVKIKLDD NTSLNKNFDLYVYPDLAIDPNKDKQPSDLGFLPLPKDHGYLAFVPGTGIEKIKDNSLYIY KAKDDFKLLENQFPVLSADGEKQEGALLPSLKLKAGFTAPLTWKAMNEYGIAKPESGIPT YMTEEDLLNNDFKQDPKPTLKDEEVNKDTVLKNLPKVKVLGEKGKEVTVLVAKAKSTNQA QLPKPEISQGHNTANGETTITGTIKDQPQGTKLALYIEGEKSDTPITINSDGSFTVTIPA EHNYKGRTRKVYHGDSVEVKAYYEGKDASYKDGESNKVVLDKKAPEIKNIVSENMPGQAQ KISGLIQDENLPGKITLETSGRTTLKTVTVVENGTFNMIISKPSRGENIVLIAEDKFGNK TDETNIRDLADQPPIGVRVEQPFAGETEILVFTVPGAEVKVFTKLGETERLIGSAIATFD SMTVVKIDSSLVKGQKIYVNASKYGYQSQATDTVITVK >gi|281298008|gb|ADDO01000021.1| GENE 170 185541 - 189671 4138 1376 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282881980|ref|ZP_06290621.1| ## NR: gi|282881980|ref|ZP_06290621.1| hypothetical protein HMPREF0628_0800 [Peptoniphilus lacrimalis 315-B] hypothetical protein HMPREF0628_0800 [Peptoniphilus lacrimalis 315-B] # 35 1376 1 1342 1342 2610 100.0 0 MKSDKLKSVGKWLLLLVLLTCMITPAFAGGGWFTMIRDNNKDKSSMLDIEDTGRNVVLRN DEYNHTFDDYVNIKRTEHQDEGRIDWEVDFMPKGGIWNGKAVAGIKHVILFPHTKYDSEP GRIYIQRVIWDPVKGKGTMNKNQGAPTNNMLNLGSQKAPTTEPFHNEGKSRWVSEDNGYG IGNTNYFDQNYQYFDDLFKAQRNPVKYHELADTVTLWRKYNVLEGVGDNKHGTFRFCLNS WDSADRASQTWKFSTFHGKGTDLSKVVLVAGVRNGGGLGRGWWSRHFRVSGLMGAGAMAK LEMNKDVYVDDKAKLTNLERDAIIKQIREDSKNKTESVYKNLSDVSRSSIEKVKTAINDS PVKIKIEDSYDKNDKPMKKVMAIMNLTYTMKTADNQDAPFHSEIKLDITDRVKLKRLVIP GSEGAPKEFMGANGEDVKKDYVKVTFDYNAYQGGKLVRKDGKPVEGSYYIRKDRNIDKAT KANMNPELGYPNNTYPGVPELAQFDNYTFSHWSWAKDGAESNKDAFDSNNSVFYKNTKNE MEFKNLYAIYKPILKIVLHNGKDGRDERIKEIPVTKDMFKGNKATIKIDQPYYNASTPGT LGEDFKMKDQSFVGWTIKKGLKVSFGDHLVDNANQISAKPFGKYMVYTLKQLKAGVDLRK SNGKYVNPPYLPNGFSLVLEGDMLQIAKENNGVIDLYANYKPYITVRATKEFKTYDWTSK KYSPYTGEKSKVYMGLLYRTHVTNFNDPTVHVDANYHPLRPVDYGRNGYSKNDYKESVLK LYDGNNVPTWLVRGYDQYGVRISYSLVEVPDEYMNDYMNFTNDWATLGVQIFHHASGAGI NPDAPADPWSDGRQVAKLQTVSIPNGKGGVDAFTAATTRETVQNANQKGTNDYNGYNIKI ANIPVDVPSPNVETITHGDKEAIISYSENKAPGAINVDKIVVKYTEHGQKTHEYHLVRTG ETWTVHGELNTTKFKAEFVERNGDRHGAVRFYFEDPSKSFFCIESSTGKRNTDIMEVENH KGQKKSKTTPVTFEPLRDSNKLVNLRQEKNEIIGDKEYTVVAATLPSPTLYEAKQGTVYA LVNKTEYDKAKAAAGGGSETFINQILDADAQKKAKGIATEVEKQIKADTNNGYNYTVKVD GNTYHTYYLREALPSNNTIRFLIPKPESESINDNTFYILSIERKKKSIYSDESLKLDTLA KLEKVEAIPSAGSLRASIKATIDEALTPDHKIKISYPGKNFEFPLNSFVTNKDGKKEFTG TSIAPLGQEVSVTYTDYYGNKTTLPAKAEKAEFITLSVVEPKRYARYIYVNRRDDSQGAK VTVKVIKNGQEITLQEVGSNRYRFTDKDQRLMPGDIVDVKGTLGDKTTYPYRVKVR Prediction of potential genes in microbial genomes Time: Mon Jul 18 12:12:39 2011 Seq name: gi|281298005|gb|ADDO01000022.1| Peptoniphilus lacrimalis 315-B contig00050, whole genome shotgun sequence Length of sequence - 981 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 3 - 882 1107 ## Dhaf_2434 cell wall/surface repeat protein 2 1 Op 2 . - CDS 785 - 979 134 ## gi|282882148|ref|ZP_06290788.1| hypothetical protein HMPREF0628_1332 Predicted protein(s) >gi|281298005|gb|ADDO01000022.1| GENE 1 3 - 882 1107 293 aa, chain - ## HITS:1 COG:no KEGG:Dhaf_2434 NR:ns ## KEGG: Dhaf_2434 # Name: not_defined # Def: cell wall/surface repeat protein # Organism: D.hafniense_DCB-2 # Pathway: not_defined # 118 293 1919 2090 2207 155 46.0 2e-36 MDNLDIVFNSYLCKREFGGKIFTGHLYNFFVYDGNKYQAQQSQGNVWSWVMNGKYDKVKG AVWVDAMDEIAGKGPGGGEQDVILSFNWNNAKEVGRVGGNNNQQNQNQNQQNQNQLNGQN QNNQASSQGFTDINGHWAKKAIDYVVGKKYFAGLSKTEFGPNKAITRGQFVTVLGRMLNV DKSQYQSQKFSDVKADAYYGPYIAWASQKGIVAGLGGNNFAPDQELTREQMALIMSKFLK VSGKNLKVKGNVKDFKDQGQISSWAKDSINEMLKLGVVNGMDDGTFAPKQAFT >gi|281298005|gb|ADDO01000022.1| GENE 2 785 - 979 134 64 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282882148|ref|ZP_06290788.1| ## NR: gi|282882148|ref|ZP_06290788.1| hypothetical protein HMPREF0628_1332 [Peptoniphilus lacrimalis 315-B] hypothetical protein HMPREF0628_1332 [Peptoniphilus lacrimalis 315-B] # 18 64 1 47 47 90 100.0 4e-17 YEVPVEALNAYQSGVYSMANNAINHTARVEERNGQFRYSVQFVPMQKRIWWQDLYWTSLQ FLCL Prediction of potential genes in microbial genomes Time: Mon Jul 18 12:13:16 2011 Seq name: gi|281297915|gb|ADDO01000023.1| Peptoniphilus lacrimalis 315-B contig00039, whole genome shotgun sequence Length of sequence - 86173 bp Number of predicted genes - 92, with homology - 89 Number of transcription units - 30, operones - 19 average op.length - 4.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 1070 791 ## COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase - Prom 1196 - 1255 10.8 + Prom 1108 - 1167 8.8 2 2 Tu 1 . + CDS 1227 - 1619 595 ## COG3576 Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase + Term 1673 - 1719 6.3 - Term 1661 - 1707 6.3 3 3 Op 1 1/0.000 - CDS 1733 - 2440 372 ## COG4905 Predicted membrane protein 4 3 Op 2 . - CDS 2437 - 2931 299 ## COG1418 Predicted HD superfamily hydrolase - Prom 3025 - 3084 14.4 + Prom 2962 - 3021 9.0 5 4 Op 1 . + CDS 3072 - 3596 669 ## COG1335 Amidases related to nicotinamidase 6 4 Op 2 4/0.000 + CDS 3593 - 4966 1111 ## COG1982 Arginine/lysine/ornithine decarboxylases 7 4 Op 3 4/0.000 + CDS 4944 - 5552 560 ## COG0125 Thymidylate kinase 8 4 Op 4 . + CDS 5549 - 5875 518 ## COG3870 Uncharacterized protein conserved in bacteria 9 4 Op 5 2/0.000 + CDS 5885 - 6169 453 ## COG3870 Uncharacterized protein conserved in bacteria 10 4 Op 6 7/0.000 + CDS 6169 - 7128 915 ## COG0470 ATPase involved in DNA replication 11 4 Op 7 . + CDS 7129 - 8019 918 ## COG1774 Uncharacterized homolog of PSP1 12 4 Op 8 . + CDS 8022 - 10127 1238 ## GYMC10_2848 hypothetical protein 13 4 Op 9 1/0.000 + CDS 10136 - 11023 1000 ## COG0812 UDP-N-acetylmuramate dehydrogenase 14 4 Op 10 12/0.000 + CDS 11016 - 11888 956 ## COG1660 Predicted P-loop-containing kinase 15 4 Op 11 . + CDS 11873 - 12832 892 ## COG0391 Uncharacterized conserved protein 16 4 Op 12 . + CDS 12903 - 13928 1203 ## COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases 17 4 Op 13 . + CDS 13925 - 14449 434 ## COG3758 Uncharacterized protein conserved in bacteria + Term 14452 - 14482 -0.4 - Term 14298 - 14339 3.4 18 5 Op 1 . - CDS 14505 - 14615 86 ## 19 5 Op 2 . - CDS 14596 - 15441 633 ## gi|300814218|ref|ZP_07094494.1| hypothetical protein HMPREF9131_0945 - Prom 15684 - 15743 8.4 + Prom 15339 - 15398 8.3 20 6 Tu 1 . + CDS 15532 - 16857 1023 ## COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase + Prom 16860 - 16919 9.3 21 7 Op 1 . + CDS 16960 - 17598 731 ## Vpar_1715 protein of unknown function DUF542 ScdA domain protein 22 7 Op 2 . + CDS 17610 - 18380 238 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 + Term 18591 - 18638 5.0 + Prom 18675 - 18734 13.5 23 8 Op 1 . + CDS 18937 - 20286 1048 ## COG1757 Na+/H+ antiporter 24 8 Op 2 19/0.000 + CDS 20353 - 21255 1005 ## COG0540 Aspartate carbamoyltransferase, catalytic chain 25 8 Op 3 1/0.000 + CDS 21255 - 21692 472 ## COG1781 Aspartate carbamoyltransferase, regulatory subunit 26 8 Op 4 13/0.000 + CDS 21649 - 22383 879 ## COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases 27 8 Op 5 . + CDS 22376 - 23278 1050 ## COG0167 Dihydroorotate dehydrogenase + Term 23281 - 23316 4.4 + Prom 23306 - 23365 13.9 28 9 Tu 1 . + CDS 23403 - 24659 1650 ## COG0786 Na+/glutamate symporter + Term 24669 - 24717 10.2 + Prom 24687 - 24746 7.8 29 10 Op 1 . + CDS 24783 - 25118 430 ## Amico_0798 hypothetical protein 30 10 Op 2 . + CDS 25122 - 26300 1005 ## COG0025 NhaP-type Na+/H+ and K+/H+ antiporters + Term 26306 - 26357 11.2 - Term 26292 - 26345 10.3 31 11 Tu 1 . - CDS 26355 - 26522 311 ## COG1942 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog - Prom 26555 - 26614 8.1 + Prom 26492 - 26551 9.1 32 12 Tu 1 . + CDS 26572 - 26697 93 ## - Term 26660 - 26696 4.0 33 13 Tu 1 . - CDS 26715 - 27728 1569 ## COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase - Prom 27758 - 27817 13.1 + Prom 27867 - 27926 11.4 34 14 Op 1 11/0.000 + CDS 28014 - 29393 1687 ## COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) 35 14 Op 2 1/0.000 + CDS 29408 - 30385 1270 ## COG0462 Phosphoribosylpyrophosphate synthetase 36 14 Op 3 7/0.000 + CDS 30386 - 30964 570 ## COG0193 Peptidyl-tRNA hydrolase 37 14 Op 4 1/0.000 + CDS 30974 - 34447 3315 ## COG1197 Transcription-repair coupling factor (superfamily II helicase) 38 14 Op 5 . + CDS 34501 - 35628 1361 ## COG0760 Parvulin-like peptidyl-prolyl isomerase + Term 35677 - 35710 3.1 + Prom 35633 - 35692 6.6 39 15 Op 1 . + CDS 35794 - 36510 327 ## PROTEIN SUPPORTED gi|90020817|ref|YP_526644.1| ribosomal protein S16 40 15 Op 2 . + CDS 36494 - 38026 975 ## Clocel_2931 hypothetical protein + Term 38032 - 38066 2.0 + Prom 38049 - 38108 13.0 41 16 Tu 1 . + CDS 38146 - 39486 218 ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 + Term 39525 - 39576 6.3 + Prom 39579 - 39638 8.9 42 17 Op 1 7/0.000 + CDS 39701 - 41689 2180 ## COG0556 Helicase subunit of the DNA excision repair complex 43 17 Op 2 . + CDS 41698 - 44511 3386 ## COG0178 Excinuclease ATPase subunit 44 17 Op 3 . + CDS 44514 - 45323 905 ## COG1376 Uncharacterized protein conserved in bacteria + Prom 45404 - 45463 10.3 45 18 Op 1 . + CDS 45493 - 46971 1712 ## COG0008 Glutamyl- and glutaminyl-tRNA synthetases 46 18 Op 2 13/0.000 + CDS 46980 - 48173 1551 ## COG0126 3-phosphoglycerate kinase 47 18 Op 3 8/0.000 + CDS 48163 - 48906 870 ## COG0149 Triosephosphate isomerase 48 18 Op 4 5/0.000 + CDS 48903 - 50414 1734 ## COG0696 Phosphoglyceromutase 49 18 Op 5 . + CDS 50429 - 51715 1757 ## COG0148 Enolase 50 18 Op 6 . + CDS 51712 - 52137 302 ## gi|282882164|ref|ZP_06290803.1| phosphohistidine phosphatase/mutase + Term 52139 - 52174 3.1 + Prom 52492 - 52551 13.1 51 19 Op 1 . + CDS 52588 - 52983 424 ## TDE1508 hypothetical protein 52 19 Op 2 . + CDS 52983 - 53660 298 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 53 19 Op 3 5/0.000 + CDS 53663 - 55000 1522 ## COG0672 High-affinity Fe2+/Pb2+ permease 54 19 Op 4 3/0.000 + CDS 55010 - 55675 1094 ## COG3470 Uncharacterized protein probably involved in high-affinity Fe2+ transport + Term 55699 - 55739 2.4 + Prom 55693 - 55752 3.1 55 19 Op 5 4/0.000 + CDS 55772 - 56995 1106 ## COG4393 Predicted membrane protein 56 19 Op 6 10/0.000 + CDS 57004 - 58287 1320 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 57 19 Op 7 36/0.000 + CDS 58277 - 59425 1222 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 58 19 Op 8 1/0.000 + CDS 59437 - 60156 296 ## PROTEIN SUPPORTED gi|225084369|ref|YP_002657150.1| ribosomal protein S16 59 19 Op 9 . + CDS 60153 - 60578 588 ## COG4939 Major membrane immunogen, membrane-anchored lipoprotein + Prom 60596 - 60655 5.3 60 20 Tu 1 . + CDS 60686 - 61780 1008 ## COG0577 ABC-type antimicrobial peptide transport system, permease component + Term 61799 - 61835 3.7 61 21 Op 1 . - CDS 61928 - 62224 320 ## gi|282882223|ref|ZP_06290862.1| hypothetical protein HMPREF0628_1054 62 21 Op 2 . - CDS 62211 - 62513 247 ## gi|282882231|ref|ZP_06290870.1| hypothetical protein HMPREF0628_1055 - Prom 62679 - 62738 7.6 + Prom 62446 - 62505 9.4 63 22 Op 1 . + CDS 62728 - 64227 423 ## PROTEIN SUPPORTED gi|145628098|ref|ZP_01783899.1| 30S ribosomal protein S20 64 22 Op 2 . + CDS 64287 - 64610 519 ## Adeg_1221 hypothetical protein + Term 64627 - 64668 8.1 - Term 64612 - 64655 7.7 65 23 Op 1 . - CDS 64662 - 64988 292 ## gi|282882239|ref|ZP_06290878.1| hypothetical protein HMPREF0628_1058 66 23 Op 2 . - CDS 64997 - 65500 408 ## gi|282882205|ref|ZP_06290844.1| hypothetical protein HMPREF0628_1059 - Prom 65645 - 65704 8.6 + Prom 65605 - 65664 8.2 67 24 Op 1 . + CDS 65696 - 66085 466 ## ELI_2170 hypothetical protein 68 24 Op 2 . + CDS 66075 - 66911 986 ## COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain + Term 66937 - 66980 1.4 - Term 66925 - 66968 7.0 69 25 Tu 1 . - CDS 66977 - 67561 699 ## TDE2372 hypothetical protein - Prom 67588 - 67647 8.5 + Prom 67529 - 67588 9.6 70 26 Op 1 . + CDS 67714 - 68034 573 ## gi|282882193|ref|ZP_06290832.1| putative V-type sodium ATP synthase subunit G 71 26 Op 2 16/0.000 + CDS 68025 - 69965 2033 ## COG1269 Archaeal/vacuolar-type H+-ATPase subunit I 72 26 Op 3 11/0.000 + CDS 69979 - 70446 772 ## COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K 73 26 Op 4 11/0.000 + CDS 70456 - 71010 750 ## COG1390 Archaeal/vacuolar-type H+-ATPase subunit E 74 26 Op 5 13/0.000 + CDS 71019 - 72014 941 ## COG1527 Archaeal/vacuolar-type H+-ATPase subunit C 75 26 Op 6 12/0.000 + CDS 72007 - 72315 438 ## COG1436 Archaeal/vacuolar-type H+-ATPase subunit F 76 26 Op 7 16/0.000 + CDS 72325 - 74100 2008 ## COG1155 Archaeal/vacuolar-type H+-ATPase subunit A 77 26 Op 8 16/0.000 + CDS 74093 - 75487 2007 ## COG1156 Archaeal/vacuolar-type H+-ATPase subunit B 78 26 Op 9 . + CDS 75565 - 76257 1005 ## COG1394 Archaeal/vacuolar-type H+-ATPase subunit D + Term 76277 - 76314 6.1 + Prom 76299 - 76358 8.7 79 27 Tu 1 . + CDS 76380 - 77894 1797 ## COG0519 GMP synthase, PP-ATPase domain/subunit + Term 77970 - 77999 0.5 80 28 Op 1 . - CDS 77977 - 78795 725 ## COG1191 DNA-directed RNA polymerase specialized sigma subunit 81 28 Op 2 . - CDS 78731 - 79045 221 ## gi|282882220|ref|ZP_06290859.1| conserved hypothetical protein 82 28 Op 3 . - CDS 79088 - 79924 1190 ## Clole_0872 hypothetical protein 83 28 Op 4 . - CDS 79942 - 80433 489 ## gi|282882212|ref|ZP_06290851.1| conserved hypothetical protein - Prom 80479 - 80538 10.4 - Term 80603 - 80641 -0.9 84 29 Op 1 . - CDS 80841 - 81209 394 ## gi|282882206|ref|ZP_06290845.1| hypothetical protein HMPREF0628_1077 85 29 Op 2 . - CDS 81226 - 82047 574 ## COG1484 DNA replication protein 86 29 Op 3 . - CDS 81998 - 82777 674 ## CLD_2033 GP49-like protein 87 29 Op 4 . - CDS 82849 - 82938 69 ## 88 29 Op 5 . - CDS 82928 - 83137 394 ## gi|282882207|ref|ZP_06290846.1| conserved domain protein 89 29 Op 6 . - CDS 83154 - 83363 379 ## gi|282882217|ref|ZP_06290856.1| toxin-antitoxin system, antitoxin component, Xre family 90 29 Op 7 . - CDS 83382 - 83579 389 ## gi|282882170|ref|ZP_06290809.1| toxin-antitoxin system, antitoxin component, Xre family - Prom 83602 - 83661 10.3 + Prom 83649 - 83708 11.4 91 30 Op 1 . + CDS 83739 - 84446 775 ## gi|282882172|ref|ZP_06290811.1| phage related transcriptional regulator + Prom 84507 - 84566 10.7 92 30 Op 2 . + CDS 84601 - 85683 724 ## COG0582 Integrase Predicted protein(s) >gi|281297915|gb|ADDO01000023.1| GENE 1 2 - 1070 791 356 aa, chain - ## HITS:1 COG:FN0973 KEGG:ns NR:ns ## COG: FN0973 COG0079 # Protein_GI_number: 19704308 # Func_class: E Amino acid transport and metabolism # Function: Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase # Organism: Fusobacterium nucleatum # 1 354 1 353 357 198 33.0 2e-50 MQNSHGANLFEIAQKNHVDINEIMDFSSNINPLSPSPRALKFLKENLDLIRTYPDPSYNN LKNSISSYVHCHKDHIILGLGATELLINFINIIDPKKSLILSPSYSEYENNLRNIGSQIY YYQLNFDNNFKISCDYIIDFINKNNIELFVFSNPNNPTGSILTNTEIKKILNKTKAYIIV DETYIEFTDMDIYSCTNLISSFDRLIVTRGTSKFFGIPGLRLGYSLNSNVEIIEKFKKNQ VLWQINICADIMGQEMFKDKEYIERVFKYITDQRLKLTDEIKKINNLMPIESKGNFILVK VLKGTNKIIVEKLKKDLIFVRDCSNFKGLDDTYFRFCILDTKSNEIFIKKLKDIKL >gi|281297915|gb|ADDO01000023.1| GENE 2 1227 - 1619 595 130 aa, chain + ## HITS:1 COG:SPy0844 KEGG:ns NR:ns ## COG: SPy0844 COG3576 # Protein_GI_number: 15674878 # Func_class: R General function prediction only # Function: Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase # Organism: Streptococcus pyogenes M1 GAS # 3 125 2 126 133 103 48.0 1e-22 MKINEDMKKIIAKELAYVATVDGDSNPNIGPKRTMRYLDENHLIFCENTGGKHFNNIKEN GKIAVAFADRENNHGYRFVGKATSYTDEEHMNLAKEKVGVVPKKACVIIEIEKIYTLDSG PIAGKLYKED >gi|281297915|gb|ADDO01000023.1| GENE 3 1733 - 2440 372 235 aa, chain - ## HITS:1 COG:lin2818 KEGG:ns NR:ns ## COG: lin2818 COG4905 # Protein_GI_number: 16801879 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 10 235 10 235 270 120 32.0 2e-27 MTFIKIYICFFIYSIIGWIWESFLCSSVELKKLVNRGFFLGPYCPIYGLGATLSYLLLRD IGSATLIFILASIVSCTIEYIVGYILEKIFKDRWWNYDNYPFQLHGRVCLYGLVIFGLAN VVIVKFSTPFLMFSLSVIKDSILIGLAISISLVSFVDLIITISARKKLNKKLSNIHERLE EKADIYFENMTNSSAFSNEYLLERGKMIRNKAMNINEKLKTTEDNIKSYRDEYFS >gi|281297915|gb|ADDO01000023.1| GENE 4 2437 - 2931 299 164 aa, chain - ## HITS:1 COG:CAC1667 KEGG:ns NR:ns ## COG: CAC1667 COG1418 # Protein_GI_number: 15894944 # Func_class: R General function prediction only # Function: Predicted HD superfamily hydrolase # Organism: Clostridium acetobutylicum # 6 149 15 157 173 116 46.0 2e-26 MKNITYNSKEKLIKEIKFLEENTRFKTNKNFIQHGTTSIYDHVIKVAWQAIYISEKYKLR VDLDSLIRGALLHDYFLYDWHKPHKYRHIHGFTHPYTAYKNASSELKLNKIEKDIIIKHM FPLTVIPPRYLESWVVSLADKIVTVRETLNPKENNYYLLEADIS >gi|281297915|gb|ADDO01000023.1| GENE 5 3072 - 3596 669 174 aa, chain + ## HITS:1 COG:L67226 KEGG:ns NR:ns ## COG: L67226 COG1335 # Protein_GI_number: 15672251 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Amidases related to nicotinamidase # Organism: Lactococcus lactis # 4 171 6 166 171 144 44.0 1e-34 MDILLVIDMQNDFVKETLNTKEALEIVDKLKEKIENFEGQVIYTLDTHDKNYLQSQEGRN LPIKHCIKNTWGHEIIDEFKVCKNFNHGKFFEKNTFGSKDLVKYLVDLDKKEDIGKIYFT GVCTDICVVSNALLIKAFLPEIELLIYKDLCAGLNKEKHKAALDVLDSCQVYAI >gi|281297915|gb|ADDO01000023.1| GENE 6 3593 - 4966 1111 457 aa, chain + ## HITS:1 COG:FN0501_1 KEGG:ns NR:ns ## COG: FN0501_1 COG1982 # Protein_GI_number: 19703836 # Func_class: E Amino acid transport and metabolism # Function: Arginine/lysine/ornithine decarboxylases # Organism: Fusobacterium nucleatum # 10 451 17 485 503 228 33.0 2e-59 MRKYIEESVDKYKNDYAFGMPAHKGKKYFDLDIKRDLTEFLDTDNLLNPQGAIKKSQEEV SEIFSSKYSFYIPNGSSGAINIAISTLAKRKDNILVQRNTHKSVMNSIIINDLNPVYINT KYDEENALFLGIELENLKNILEENSIQLAIFVSPNYYGGILKLKEIVRLCHSHNVYVIID EAHGSHLYFSHMKEFCANFSGADIVINSTHKTIPSLTQTALLHVNSDRVDVDKLKKIINI YTTTSPSYLFLISQEEGIDYMVKEGYKKLEILRKELDKIGKDTGIMSHNINDSTIASYDT MKFLFRLPILSGIEIVKKFHLEYNIRLEMGDLYYALAIFSPLTEICELRKFIDVILSLRN GEYKKIVKLKFPTSKRIISPRKAFDSPSIYKDLKDSCGMISANNVAFYPPGIPIISYGER ITKEIIDIILNNLNEGIEVVGINQGKIEVVDESICNF >gi|281297915|gb|ADDO01000023.1| GENE 7 4944 - 5552 560 202 aa, chain + ## HITS:1 COG:BS_tmk KEGG:ns NR:ns ## COG: BS_tmk COG0125 # Protein_GI_number: 16077096 # Func_class: F Nucleotide transport and metabolism # Function: Thymidylate kinase # Organism: Bacillus subtilis # 3 196 4 204 212 159 44.0 3e-39 MSLFVTFEGADGVGKSTIANLIYEELLKRNIEVIKTREPGGTRISEAIRDIILNNSYKEM DYRCEALLYAASRAQHVEEKIKPALKSGKVVLCERFVLSSLAYQGIGRNQNLDHIKAINE YATMGLEPDIVFIFLNKEETLLRKLENADRLERAGDDFHNKVRDFYKNLQKKDNYYFIDA WQSIDKVFSDTLEVLDNVGGLK >gi|281297915|gb|ADDO01000023.1| GENE 8 5549 - 5875 518 108 aa, chain + ## HITS:1 COG:BS_yaaQ KEGG:ns NR:ns ## COG: BS_yaaQ COG3870 # Protein_GI_number: 16077097 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 108 1 109 109 95 45.0 2e-20 MKLIISIVQDVDSENLIQRLNEEGFRVTKISSTGGFLKAGNTTLLSGVEEDVYPKFMKIM EENSKTRIVNKTIAPINIPGQAMIPVPVEVKVGGATIFVMNVVDYKRF >gi|281297915|gb|ADDO01000023.1| GENE 9 5885 - 6169 453 94 aa, chain + ## HITS:1 COG:CAC0299 KEGG:ns NR:ns ## COG: CAC0299 COG3870 # Protein_GI_number: 15893591 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 1 94 1 109 109 62 39.0 2e-10 MKMIIAIVQDKFIDDLIDRFLTEDIYVTRLSSTGGFFKSGNTTLLLGCKDNEIKAIEDIF KEITEKEEVVSEKGSFEVAGATMFVVDLEESKRI >gi|281297915|gb|ADDO01000023.1| GENE 10 6169 - 7128 915 319 aa, chain + ## HITS:1 COG:SA0442 KEGG:ns NR:ns ## COG: SA0442 COG0470 # Protein_GI_number: 15926161 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA replication # Organism: Staphylococcus aureus N315 # 17 314 6 304 308 120 29.0 3e-27 MKNDNSIFLEDKNVSSQLDLALKNKDFSHAYLFVGPKGIGKFAQAKNFARAILCGDNKND KSFCNLLYDYFHPDLIEVSSKETIKKEQIEELIEKAGTKPFESNKKIILIDGFDNVTIEG QNALLKTLEEPEDYLIIILVSSNIKNILPTIRSRARILKFQNISVERIYDYLLKTGLSEK NARLFSNLSCGSISLAKRYKEDVELLKKRDELIEILDNLIRTGSYYIFSYLDFFKENKEN IEDILNFFSLWFRDLAFIKINKKEKIINIDKLNILELEDLTLDRILFIYNKILLTKENLS KNMNYDLSIEALLMYIGGM >gi|281297915|gb|ADDO01000023.1| GENE 11 7129 - 8019 918 296 aa, chain + ## HITS:1 COG:CAC0301 KEGG:ns NR:ns ## COG: CAC0301 COG1774 # Protein_GI_number: 15893593 # Func_class: S Function unknown # Function: Uncharacterized homolog of PSP1 # Organism: Clostridium acetobutylicum # 1 295 1 301 303 310 57.0 3e-84 MIDVAGVRFKKTGKIYYFDPLDSGASVGDDVIVETVRGLEFGNVILLRTFEDEEFSTELK PVIRIATQDDQSKNIDNRNKSKEAIILCDKKIKEHNLDMKLISCEYTFDNSKLLFYFTSD GRVDFRELVRDLAAIFKTRIELRQIGVRDEAKLVGGLGCCGRPTCCSTFLSEFSPVSIKM AKDQNLSLNPTKISGVCGRLMCCLKYEQKGYECINKIMPKVGEFIITEDGKATVISTYPI QELIKASLIVNDETVVSYFNVKDIKRTGKFNRDFLDVTAENKETYDEKELSELEKE >gi|281297915|gb|ADDO01000023.1| GENE 12 8022 - 10127 1238 701 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_2848 NR:ns ## KEGG: GYMC10_2848 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 169 698 182 749 752 236 30.0 2e-60 MKIENIILKIYNKVKDLFRSNFGSTKGAERILKIFISLFYATDHYSYLTDFKVPTIISII IFAFIIYLILSIISFLGKYLIILLQRTKPINLTVYILLLIGVKYFLDNSLNLYLKDWQNY LLLFCACVILIIFAKSFISLFKNKRNLALIFFLPTFCLVFLGIYFYSFPGFQRSALKLAE FKKDKVVERATAYESEEIFYKGPEVSLNSYVSYGGLTKKVRDFYFKKKLNQVEVKGKVYL PKNQKEAPLLFIVHGNHRMTTKNYLGYDYLGKYLSQRGVAVVSVDMNMLNSFYKYSLKNE NDARAILLLENIKYLLSENRNENSKFYKAFDSENIALMGHSRGGEAICIANNFNKLNKNP DNGNIRFNYGFNIKGLIAVAPTFGQYEPCDRELKLWDVNYLTIAGTNDCDVTSFEGQMQY DNIGFSPNSDKFKTAVYVGYANHGNFNSLWGDFDLQPPEGLDINRKELLNQLSQKRILSI YTYNFLENIFGKSFNRDLFKYGPYNYKDFPKTTYYSRYKDSTYENICDFEEDTNLQSAST FGDYIDFSNFSDIYEGANSYGEDKGKNNSVFLSTNDKSRYQIFLRNIPQKRQFLVFDLEN FEEINDYDGFKIKISDMVGESASLNIKDYFPAYPPTKVYLYKSDHVFDDYKNYSAPISLR IDLEDFKNNNPLINLEEISNIEFDFDKSIGQISLDNIGFAD >gi|281297915|gb|ADDO01000023.1| GENE 13 10136 - 11023 1000 295 aa, chain + ## HITS:1 COG:CAC0510 KEGG:ns NR:ns ## COG: CAC0510 COG0812 # Protein_GI_number: 15893801 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate dehydrogenase # Organism: Clostridium acetobutylicum # 17 295 25 302 305 273 50.0 3e-73 MKYNFDKNLGEFLENEPMKNHTSFKVGGPCELFVRPKDEKSLIEILKIIRKNNYNFYILG NATNVIVKDQGYKGIIISIKNRLKDVKVDGLKITAGAGLSLKELSQTAYENSLSGLEFAN GIPGTVGGAMTMNAGAYDGEMKNVVESVRFIDNLGNIREYSNEEMDFSYRHSKVGDENLI VLSATFVLEKGDKEKIREKFQEFDRRRKEKQPLDLPSAGSTFKRPEGYFAGKLIDDSGLR GFRHNGAGVSQKHCGFVVNYDNASASDVLETIEIVQKVVYDKFSVKLEREVKIIG >gi|281297915|gb|ADDO01000023.1| GENE 14 11016 - 11888 956 290 aa, chain + ## HITS:1 COG:lin2617 KEGG:ns NR:ns ## COG: lin2617 COG1660 # Protein_GI_number: 16801679 # Func_class: R General function prediction only # Function: Predicted P-loop-containing kinase # Organism: Listeria innocua # 4 285 5 288 291 268 45.0 6e-72 MDNKIEVIILTGMSGSGKSKALDTLEDLGYYCIDNLPPELLPKFCQMATQSKSVDKIAAV MDLRSGEFFESLFSSIEELKNLNISYKIIFLEASQDAIIARYKEGRRPHPLNPSIIEGYK MEKENLGEIRKKSNYIIDTTLFSAKDLKKYLIEVLTNNEETEITIQITSFGYKNNILKDA DLVFDVRFLPNPYYIKELQDKDGLSEETRDYVLKWDVSQTFIDKVIDLLKFLIPNYIKEG KSVLNIGFGCTGGFHRSVVIAEEVARILKKDYKSLYVSHRDRKKKLWIKE >gi|281297915|gb|ADDO01000023.1| GENE 15 11873 - 12832 892 319 aa, chain + ## HITS:1 COG:CAC0512 KEGG:ns NR:ns ## COG: CAC0512 COG0391 # Protein_GI_number: 15893803 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Clostridium acetobutylicum # 4 316 104 412 451 262 45.0 6e-70 MDKRISIIGGGTGISTILKGLKSYTTNINAIVTMSDDGGGSGLLRKDLKMLPPGDVRNCL LALSNATPSLEVLLKYRFKGGSLDGQNVGNIIIAALNDIYGSFDKALNEMSKAFNITGRV IPVTLEDTHLVGELSTGDKIVGESIIPKMAYKLGGKILKISMLPRIPKANKEAINAIENS DILIIGPGSLYTSVIPNLIIKGIISAIKKSKAKKIYIANIMTQRGETLKYSLKDHIEAIE EHSYKGIFDIAIVNNNKKPKDIFNSYYSFEETCPIYANDEDKKFLKERSIRLIEGDLIYI ENKLIRHNFENLADIICRL >gi|281297915|gb|ADDO01000023.1| GENE 16 12903 - 13928 1203 341 aa, chain + ## HITS:1 COG:lin1420 KEGG:ns NR:ns ## COG: lin1420 COG1304 # Protein_GI_number: 16800488 # Func_class: C Energy production and conversion # Function: L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases # Organism: Listeria innocua # 1 332 8 340 358 244 39.0 2e-64 MRKFRKREHIENYLRSTYVGNPLFDDMFLYHNSLPEVDFSEINTSTVFLNKKVNFPLMIN AMTGGSDFAEDINRQLAQVANEFNIPIAVGSQTIALEDPDTVESFSVVREIVEKGIVIGN LSARTSLEDAKKAIDIIRADSLQLHLNPAQELAMSEGEREFKNILKNIEELVNGLDVPII VKEVGFGLSSDVVKRLYDIGVRNVDVSGFGGTNFFEIENLRTPDSDLSELYGWGIPTALA IIEAKSLGLDDLKIIGSGGIKNSEQLIKSIVAGADMTAISGEILSYLVHGGVEYTLKYLG NLIYKSKMIMLLLGAKDIKDLRNVKYKVKGELRDLLENFKL >gi|281297915|gb|ADDO01000023.1| GENE 17 13925 - 14449 434 174 aa, chain + ## HITS:1 COG:SPy2087 KEGG:ns NR:ns ## COG: SPy2087 COG3758 # Protein_GI_number: 15675844 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 8 115 11 120 198 77 33.0 2e-14 MKLIKRENFIDSKWSGGVTSEIFIYPENAKVSEKNFDFRISTATCNLEKSNYTAYDGFLR YICPLDNTMNITTSDCKFFLKPMEVMFFHGNDNTYSSGGVRDFNLIYREDLKAQMYSLNI KDLKYKFKGKSIIFNYDSLLTYNEKIFPEFSALYIEDEEVEIKGCGKIIICQIL >gi|281297915|gb|ADDO01000023.1| GENE 18 14505 - 14615 86 36 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MEKSVFRYKKYIGYTDYVNVFLFFIYKFFTGLYSYF >gi|281297915|gb|ADDO01000023.1| GENE 19 14596 - 15441 633 281 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|300814218|ref|ZP_07094494.1| ## NR: gi|300814218|ref|ZP_07094494.1| hypothetical protein HMPREF9131_0945 [Peptoniphilus sp. oral taxon 836 str. F0141] hypothetical protein HMPREF9131_0945 [Peptoniphilus sp. oral taxon 836 str. F0141] # 1 281 1 281 281 462 97.0 1e-128 MCSPLSNGIIFIINALFLIISIYLFLIFPRNEKSEIKDPLKLPYYMAGFLIKGKNSAPDF IISSIIKFIENGNIKIDRNDYINSRGKERINYNIDADNSNNLDKEEKFLYDLIFSLDENI STRKINNLRIKEGIGFNQKFSSYLDILEENAYELNLLYKAIDRKKFFIYVFMALVDVLVG AVLANKGLYPAYVLIFFGFVLLLSSLKLLGQNPPVGMATYKYYRDFEKELNEKDNFHGDD IYYALAFAMDLEKIMDKDSNIDKYISFIEILKDSLVGKIGF >gi|281297915|gb|ADDO01000023.1| GENE 20 15532 - 16857 1023 441 aa, chain + ## HITS:1 COG:CAC1435 KEGG:ns NR:ns ## COG: CAC1435 COG2265 # Protein_GI_number: 15894714 # Func_class: J Translation, ribosomal structure and biogenesis # Function: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase # Organism: Clostridium acetobutylicum # 2 440 6 453 456 320 41.0 4e-87 MKNIILEGIIKDGTFPNRNTVTCQEKDYKIKGGIIGSEVRFKPSRRKKGKLIETIKKSSW ENIKPCPHTDCGGCTYDGFSYDKEIEYKEKLLNNLLHEELNLDNIKIYSAGIFENYRNKM EFTFGDTYKGSPLALGLHKKNRFYEIENTNNCRIAHEDFNIIREKTRDFFKDKAFFNRRS HEGTLRHLAIRRTNYGEILVNIVTTKDNDLDLKSYVDELLSLKLEAQIKGICHTINDSQG DAIIKEDFHILYGRDYVIEELLGLKFKIGTFSFFQTNTYSAAYLYQLAFDMIDNLQGKKV LDLYCGTGTISQVFAKKAESVLGVEIVEEAVNAARENAQYNNISNVDFIAGDVAKVVNDL DIKADIIILDPPRVGINNPKALDKIIDFSPEEFLYISCNPISYVKDVKRFIERGYKLKKI VGLDQFPRTVNLELISLLEKD >gi|281297915|gb|ADDO01000023.1| GENE 21 16960 - 17598 731 212 aa, chain + ## HITS:1 COG:no KEGG:Vpar_1715 NR:ns ## KEGG: Vpar_1715 # Name: not_defined # Def: protein of unknown function DUF542 ScdA domain protein # Organism: V.parvula # Pathway: not_defined # 2 208 6 216 219 93 29.0 7e-18 MIQRAMTVEDAVMTDSRVLQKLNNLGINYDFIATEKLEVVLKENGIDFDFFVKQIEGEQN FEGIEQIKTWSKKEIIKYIIKEIHPFEINLIEKLDKELRELIHDHYLENGEQLFTIYETL LLIKAELVHHFSKEEIEFEELLSDDNVDFSSLIAEHEKTIGLFDRIKYLSHEFSLKANYE KIKDVNEDLFKLDSDMRRHIYIENEFLFKNQE >gi|281297915|gb|ADDO01000023.1| GENE 22 17610 - 18380 238 256 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 5 246 1 240 242 96 29 5e-19 MAFSVKGKNVLLTGGAKGIGKGIAEVFLKEGANLVFTGRNVDVAKDAEKEFKKINEKVKF IRADVSSEDDTVKLFKEANEFLGSIDIVILNAGYYPQNRISQMKLSDWEKVTDINLKGVF LNTREAMKYLKNGSHIVITSSITGNRVGNPGLSHYSASKAGVNGFMRTAALELSTLGINI NAVEPGNIMTPGMEGVLGEKYIKDQEAIIPLGKLGSSEDIAYAVLFLASDEAKYITGQSI VVDGGQILPESAMDLH >gi|281297915|gb|ADDO01000023.1| GENE 23 18937 - 20286 1048 449 aa, chain + ## HITS:1 COG:FN1420 KEGG:ns NR:ns ## COG: FN1420 COG1757 # Protein_GI_number: 19704752 # Func_class: C Energy production and conversion # Function: Na+/H+ antiporter # Organism: Fusobacterium nucleatum # 4 430 2 428 445 416 55.0 1e-116 MIKKSKGNFISLLPFLIFIFSYLGIGLFFVMNGKNDGFYMFKSPIAVIIGIIFAFILIGG DYYEKISIFLKGCGDENIILMCMIYLLAGAFSNVSSKMGGVEATVNLGINLIPASLISLG VFLIACFISLSTGTSVGTIVALGPIAVGFAEKSSISLALIIGTLISGAMFGDNLSVISDT TIAATRTQGVNMRDKFKTNLAISLPAMAVTVVLLLIFARPDKNLIIEKEAFNFIKVLPYI FVLITAISGVNVFIVLTCGIIFSGIIGIICGDFSLLTFTNHIYDGFTSMFEIFLLSMLTG GLASLVKYGGGLDYLISKVKSFIKSSKSAEFGIGLITLLTDAATANNTVAIIIVGPVVRQ ISEKYRVDPRRSASLMDIFSAVMQGFIPYGAQVLMAVSYAGGKINVFSIMPYLWYQFALL FFAILSIFIPYANSYINNYPWDFEKWDIQ >gi|281297915|gb|ADDO01000023.1| GENE 24 20353 - 21255 1005 300 aa, chain + ## HITS:1 COG:CAC2654 KEGG:ns NR:ns ## COG: CAC2654 COG0540 # Protein_GI_number: 15895912 # Func_class: F Nucleotide transport and metabolism # Function: Aspartate carbamoyltransferase, catalytic chain # Organism: Clostridium acetobutylicum # 2 297 5 304 307 350 58.0 2e-96 MRHLIEPLDLTTDEFEFIFRLADDIILDPSKYLDRAKGKLLASLFFEPSTRTRLSFETAM LRIGGGVIGFSDSKVTSTTKGETLIDTIKTVENYADICAMRHFKEGAATLASKVSTKMPI INAGDGGHFHPTQTLADLLTIRHHKGSFSNLNIGFCGDLKFGRTIHSLVRALNRYEDVNF TFISPKELKMPDQFKSFLKSYDETDSLTDALPDLDILYMSRVQQERFVSSDEYERLKDFY ILTPEKLKRSKDDMCILHPMPRVNEISVEVDKDPRACYFEQMKFGMYGRMALILFLLELV >gi|281297915|gb|ADDO01000023.1| GENE 25 21255 - 21692 472 145 aa, chain + ## HITS:1 COG:CAC2653 KEGG:ns NR:ns ## COG: CAC2653 COG1781 # Protein_GI_number: 15895911 # Func_class: F Nucleotide transport and metabolism # Function: Aspartate carbamoyltransferase, regulatory subunit # Organism: Clostridium acetobutylicum # 1 138 1 137 146 120 47.0 8e-28 MINVSKIKKGIVLDHINRGEAFKIYKALKLNKIEDTVVLMQNIPSSSMGKKDLIKIETDF DLDFTVLGLIAPDITVNYIEDGKRIKKFTMELPKAVEGVLKCHNPRCVSNSERVIPGQVF YLYNKEKREFRCEYCDTICTYEEDE >gi|281297915|gb|ADDO01000023.1| GENE 26 21649 - 22383 879 244 aa, chain + ## HITS:1 COG:CAC2651 KEGG:ns NR:ns ## COG: CAC2651 COG0543 # Protein_GI_number: 15895909 # Func_class: H Coenzyme transport and metabolism; C Energy production and conversion # Function: 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases # Organism: Clostridium acetobutylicum # 13 242 7 242 246 199 44.0 4e-51 MNTATQFAPMKKMNKVIDNIKITDNFYLLKTDGVKNTRPGQFFMLRAWDKYPVLSRPISI FNVGEHLEFLYQVVGKGTEILKNLKKGSPINVYGPYGNGFDINVDSLAMVGGGVGVAPFY YLSKKILEKNKDAKLRLYLGEREGQNLESLFSDLPIDIKVKKGGFVTDIIDFDKHKLYYA CGPEIMMKKTHELCRANNKNSYISLDLRMGCGLGACLSCSVDTKNGRKRSCKDGPVFMGS DIYE >gi|281297915|gb|ADDO01000023.1| GENE 27 22376 - 23278 1050 300 aa, chain + ## HITS:1 COG:CAC2650 KEGG:ns NR:ns ## COG: CAC2650 COG0167 # Protein_GI_number: 15895908 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotate dehydrogenase # Organism: Clostridium acetobutylicum # 5 288 3 286 298 305 52.0 1e-82 MNRMEVELCNIKLKNPLITASGTFGFGEEFIDYYDTKILGGIVSKGITRIAKDGNKGVRI WESPSGILNSIGMENPGVEKFCTDYFPKMKKLGSEIFVNLGGNTLDEYVEGAEILEDLDF NFLELNVSCPNVSKGGMAFGLEAGPLFEVVKNVRKVTKKKLIVKLSPNARDMVEVARACQ EAGADGVSLINTILGMAIDFDKRKNVFNNDYAGLSGPCVKPIALRMVHQISRAIDIPIVA MGGVTSYKDVLEFLMVGASAVEVGTYNFMNPYGPKEIIEDLEKYLDEKDEFIKDFIGLIK >gi|281297915|gb|ADDO01000023.1| GENE 28 23403 - 24659 1650 418 aa, chain + ## HITS:1 COG:HP1506 KEGG:ns NR:ns ## COG: HP1506 COG0786 # Protein_GI_number: 15646115 # Func_class: E Amino acid transport and metabolism # Function: Na+/glutamate symporter # Organism: Helicobacter pylori 26695 # 42 408 22 395 408 176 31.0 7e-44 MNLQSALDYFGTYTKGVGGAVSTFKFEYLTSLGIAAIVIFLGKFIVGKSKLLQKYAIPAP VVAGLLFSILVAIIKSLGILGFEFDVDITKDLAQNIFFLAVGYGFSAGLIKNAGGKFLVK IAFATCLLITLQNVVGLLVGKLINLDSFLALQCSSASMSGGVGTAAAMGKVFEGMGAPAN VTEVGVAAGTMGNIMGSLIGGPVAAYLISKYSLKSDPNDKPEQELSDLVYELKDKNMVSA FALTLFIGALGMPIYFLLDNIPYIEMPKFIGCLFAGAIMRNVLEKMDKETYVNEMNAIES MFLDLYLALVLMTMDITKLIPVAGKMGIVLLAQAIFIAVFAIIVSFNMFGKDYGGAVMAA GNVGWGCGSGPNAVANIKAVMDEYGYHHIAWILYPSFAVLIDDIYNPIFLSLISNFLK >gi|281297915|gb|ADDO01000023.1| GENE 29 24783 - 25118 430 111 aa, chain + ## HITS:1 COG:no KEGG:Amico_0798 NR:ns ## KEGG: Amico_0798 # Name: not_defined # Def: hypothetical protein # Organism: A.colombiense # Pathway: not_defined # 1 109 1 110 116 88 42.0 8e-17 MKALFITINHEEHFRKLLKEFGKTGIRGGTILSSEGLAASQAEIAPELGLNYFRLFLNSG RPYNKTIFLVLEDDKVEEAKECVRRVVGNLNRENVGIMFTIDVDSFEGLTK >gi|281297915|gb|ADDO01000023.1| GENE 30 25122 - 26300 1005 392 aa, chain + ## HITS:1 COG:MTH760 KEGG:ns NR:ns ## COG: MTH760 COG0025 # Protein_GI_number: 15678785 # Func_class: P Inorganic ion transport and metabolism # Function: NhaP-type Na+/H+ and K+/H+ antiporters # Organism: Methanothermobacter thermautotrophicus # 3 346 4 354 399 70 21.0 5e-12 MDIIFNISVLFLSGLLFARIFGKFKFPDVTGYLIGGIIIGPCVLGLLSKEAVDSMDAISQ LALSFIAFSVGSEMNFESIKEMGTKILIVTFFEAMGALIFVTLTMLLFFKTDVAFAITIG SIASATAPAATLMVIKQYNAKGGLVDVLIPVVALDDAICIMAFGVCSSIAITIMSGSDLN FVNMIFEPVKEIFLALIVGFVAGIIFILLSKRLKNDTETLTFTLAMIFIVTTVTDKWGLS SLLTLMMSGIVISNMGSVDRRYQELISTITPPIFIAFFVLSGADLNLGGLKAAGLIGFAY VIARVLGKFFGAMASTKLTGFSKEVQNNLGLTLIPQAGVAIGLSLIAEKIIPEPHGSMIR TIILAGTICYELIGPIVAKFALKKAGCIEEDI >gi|281297915|gb|ADDO01000023.1| GENE 31 26355 - 26522 311 55 aa, chain - ## HITS:1 COG:lin2709 KEGG:ns NR:ns ## COG: lin2709 COG1942 # Protein_GI_number: 16801770 # Func_class: R General function prediction only # Function: Uncharacterized protein, 4-oxalocrotonate tautomerase homolog # Organism: Listeria innocua # 1 54 1 54 61 59 51.0 2e-09 MPFIHVELVEGRSDEAKKKIAQEIIESVHKHANAPKEHIHVIFQDMKKTDYYKGN >gi|281297915|gb|ADDO01000023.1| GENE 32 26572 - 26697 93 41 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MDDLNFLKYKKLSEIFSYIYNLCKILRKLILNENRRGLNLA >gi|281297915|gb|ADDO01000023.1| GENE 33 26715 - 27728 1569 337 aa, chain - ## HITS:1 COG:TM0688 KEGG:ns NR:ns ## COG: TM0688 COG0057 # Protein_GI_number: 15643451 # Func_class: G Carbohydrate transport and metabolism # Function: Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase # Organism: Thermotoga maritima # 1 335 1 332 333 358 53.0 6e-99 MKKVAIMGFGRIGRDALRIWALRKDKNFEITHVAVRNLEKTMKDRIHLFKYDSIYRKYPG TLELTDDGMILDGKKITFIEAKAPKDMDWKKYGIDLVIDSSGAFKNREDAQGHIDSGAKK LVLTSPAKGEDITVVMGVNDDKLDLSKHDIISNASCTTNCLAPVTKVILENFGIVKGLMT TVHAYTNDQKIHDAPHKDMRRARMGAENIIPTTTGAAKAVGKVLPEVDGILTGFAIRVPV PTGSLVDVTFELKKEATKEEINEAIKKASENEMKGILAYSDEELVSTDIIGDSHSSIFDS KLTLVNGNMVKLVSWYDNEWGYTSRVIDLVDKVCKSL >gi|281297915|gb|ADDO01000023.1| GENE 34 28014 - 29393 1687 459 aa, chain + ## HITS:1 COG:FN1991 KEGG:ns NR:ns ## COG: FN1991 COG1207 # Protein_GI_number: 19705287 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) # Organism: Fusobacterium nucleatum # 4 451 3 444 446 358 46.0 1e-98 MEVSIILAAGQGKRMKSEKAKVLHEVLGRPMLFYVLNACQESNIEKNLVVIGNKKEQIKE AFEESEFLKFISQPIGEDAPYGTGFAVSCCLGEIGDEDNIIILNGDTPLISSKTIDKFLN YHKSKNNDLTVLTADFCDPTNYGRIIRDGNANVIKIVEEKDASEKEKLVREINSGIFAFK GKSLKYAISKINSDNAQNELYLTDTLNILVGENKKVGSYKLKDKREILGVNSKAELAHVS SILREIVNNEYMLKGVTLIDPERTYIEYGAKIEEDVCIYPGSYIDKNSHIKKGAKIIDSK IFNSSVGENVKITDSYIEESIIEENTTVGPNAHLRPNSHVGKNCKVGNFVEIKNSNIGDG TKMSHLAYIGDADVGKNVNIGCGVIFVNYDGKKKYRSKVSDNAFIGSNSNLVAPVNVHEY GYIAAGSTITKDVQKGQLSVERSQQKNIDGWVSKKGFDK >gi|281297915|gb|ADDO01000023.1| GENE 35 29408 - 30385 1270 325 aa, chain + ## HITS:1 COG:BS_prs KEGG:ns NR:ns ## COG: BS_prs COG0462 # Protein_GI_number: 16077119 # Func_class: F Nucleotide transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoribosylpyrophosphate synthetase # Organism: Bacillus subtilis # 1 315 1 316 317 377 59.0 1e-104 MNQKMGDIVVFTGNSNHELVDNICKEIGIEKGKCKVSTFSDGEIAIDIDISVRGRDVYII QSTSSPVNNNLMELLILMDAIRRASAGRINVVIPYYGYARQDRKTKAREPITSKLVANLI SNTGADRVVAMDLHAGQIQGYFDIPVDHLTAIPYLARYFKSIIKEEDFVVVSPDLGGVTR ARAFANELNLPIAIIEKRRPKPNVSEVMNIIGDIKGKNAILVDDIIDTAGTICKACDSLI EKGAKKVYGCATHGVLSGPAIDRINNSNLEKFVITDTIHLPKEKQIDRIDIVSVAPIFAS AIKRINTNSSVSEMFEKKDKGTITK >gi|281297915|gb|ADDO01000023.1| GENE 36 30386 - 30964 570 192 aa, chain + ## HITS:1 COG:BS_spoVC KEGG:ns NR:ns ## COG: BS_spoVC COG0193 # Protein_GI_number: 16077121 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Peptidyl-tRNA hydrolase # Organism: Bacillus subtilis # 4 191 1 188 188 165 40.0 6e-41 MDNLFVIAGLGNPGKDYEKTKHNIGFSTVDKIAEKLSVNMNKIKFKGLLGETRIGQNRLI LLKPQTFMNNSGESIRMCLDFYKVDVKNLIVIVDDIDINFGQLKIKKEGSAGTHNGLKSI VNHLSSKSFPRIKVGIGQKKEGEDLANFVLSNFSSNDAKHIDKATDAARDAAIDIVEKGI EYTMNAYNNKIY >gi|281297915|gb|ADDO01000023.1| GENE 37 30974 - 34447 3315 1157 aa, chain + ## HITS:1 COG:BS_mfd KEGG:ns NR:ns ## COG: BS_mfd COG1197 # Protein_GI_number: 16077123 # Func_class: L Replication, recombination and repair; K Transcription # Function: Transcription-repair coupling factor (superfamily II helicase) # Organism: Bacillus subtilis # 1 1104 1 1111 1177 890 44.0 0 MDFLVDIINNLRPFEEISDALKDSKSPIAVYGTTEGFCGIFSYALFRKLNKKLLIIAENR LSARKYYEDLFNISPLRVLLYPEKDIFLYDRDSKSRDNLKTRLGTISKILTDDWDIIVTT LRALGDKISARDVFLKNTLTLEKSKDIDIKSLNAKLLQMGYERYPQVEGMGQFSIRGNII DIATFSDNYRIELFDTEIDSIRTFELESQRSIDFIDSVKIFPTLDILISEDDRLNAAKKI ENEINKTKLSGERKDRLFEKFSLYKNRLVEDEYIQNPDLIIPFLNEDKLSGIIDFIGEDT ISILNEPKQILEREETLELENSETITEMITFGEALPSHKNIYYPYLNIIDKLRKRNLLTL NALLTSPKEFRPKAIVNFKMKSITNYRSKIKLFREDLDYYLSNGYKVILLGGSLKRAKRL HNFLLEFNLNVEFKEDRNTEFANNFVVTTGSVNAGCEFALSKIVIINYAEIYGTYKEKKK PKRKKEKILNFEDLHVGDYVVHESHGIGKYIGTEQLEVSGIKRDYVVIKYFGDDKLFLPI ESLDLIYKYTGDEKKAPKLNKLNSIEWNKTKRKAKKSIDDMADDLIKLYAARESKNGFKF SKDSSFQREFEDAFIYEETDGQLLSSEEIKKDMEEAHPMDRLLCADVGYGKTEVALRAAF KAILDGKQVAFLVPTTILAQQHYNIMVERFKDFPVEVGILSRFRTKKEQKETIEKLKAGI VDIVVGTHRLLSKDVVFKDLGLLIIDEEQRFGVRHKEKLKMLKENIDTLTLSATPIPRTL QMSMIGIRDMSVIEEPPEERFPVKTYVLEYNPLMVREAILREVERGGQVYFVYNRVANME YKLQELRELVPEVSFVMANGQMNEKDLEDTMLSFLRGDVDVLLCSTIIETGMDVQNANTM IITDSNRLGLSQLYQLRGRIGRSSRVAYAYFTYEKDVSISEIAQKRLKTIKEFTEFGSGF KIALRDLEIRGSGSILGSKQHGHIDNIGYDLYMKYLTQAVNKLKGIETRETIETVIDLKI DSYIPKTYIEDERLRLEIYKKISVLESEKEYSDLIDELIDRFSDLPKEVVNLMDISLLRY KASKINVISIIEKDGKYTIKLNEEIGLNLIKEMGENFKYISYDLSEHSEIILEKLKYPME DLKKALVIISSQKNHNK >gi|281297915|gb|ADDO01000023.1| GENE 38 34501 - 35628 1361 375 aa, chain + ## HITS:1 COG:BH1177 KEGG:ns NR:ns ## COG: BH1177 COG0760 # Protein_GI_number: 15613740 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Parvulin-like peptidyl-prolyl isomerase # Organism: Bacillus halodurans # 89 309 58 282 333 106 31.0 8e-23 MFLKKFTVAVLSGLMLVSLSACGKGPEGVAAKVNDVEIPMEDFYKSYAIRRNQYVANAGG DESVLEGPIDPTGKQSKLTVDQYLKDITIKDLTETEIIKQDAAANNIKVEDSEIQKILDQ YKAQLGGDEQFKAYLDSLGIPLDYLKEVLKNQTLVGKYTQEKNKNIKVTDDDVKKYYDEH KDDFFKAKASHILVDDLKKANEIKKEIDKGAKFEEMAKKESKDTGSATNGGDLGEFTNGQ MVQSFNDAIKKMEKGEISDPIKSDFGFHIIKLKERKPRTFDEVKDEIKSKLTQEKYEKAI KEVVSKAKVKKYVKAEDEIKIPDEFKNYGKVKQDATKENSQASEGANKETNAQEKNAEKN QNKGNNKASQEKKSK >gi|281297915|gb|ADDO01000023.1| GENE 39 35794 - 36510 327 238 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|90020817|ref|YP_526644.1| ribosomal protein S16 [Saccharophagus degradans 2-40] # 2 226 12 237 318 130 34 2e-29 MLEIKDLYKSYGNKNILKGINLEVLAGDIFAFIGKNGAGKTTTIKCIVGINDFEKGLIKI DGMDVVKNPIECKKITAYIPDNPELYEFMTGIKYLNFIASVYGVDMDEVKEKTDFLIKTF DLTDALYEPISSYSHGMKQKLSIIASLIHKPKLLILDEPFVGLDPEATFYLKEEFKNMVK EGSAIFFSTHVLEVAQNLCNKLAILKDGKIVISGNTKDVISNSSLENIFMELVNAKDK >gi|281297915|gb|ADDO01000023.1| GENE 40 36494 - 38026 975 510 aa, chain + ## HITS:1 COG:no KEGG:Clocel_2931 NR:ns ## KEGG: Clocel_2931 # Name: not_defined # Def: hypothetical protein # Organism: C.cellulovorans # Pathway: not_defined # 79 493 86 505 524 96 24.0 2e-18 MLRINKEIILLKLEILRLLNNNQGKKKFLTGLSANVVMAFMFIFYSASLTRSFYKGNPLK VIVTSTVIVFLMIFWGNILYSNNSLFEKRELENLLPMPFTSLEIISSKILGIYLYNLGIV ACMVIFPFLYVTYDNCGFPFTLFTFLMLLSFPMIPLCLSLLATAFFGKIFTNKIVKIIGG IIFFSIVILFYIMLYFSNRSLNILAIIIEKLSKISLLKTFGLIFIEGNYLKGLIFMGISI LFFGLVSVFLSKTYLEIFYRKANKIKKSSNKALKMVTKNKSRSLLEKEIGLYFSYNNYIL NTILGPILLLILGVAPLVTGMANLQNMMDFDVEKLFTTNSILVVTAFAAMGQTTYCSLSI EGRNYYLMQTLPIKAWDVFKAKLKLGIILISAPLIFTSLVLSLKFNLGFLAFLLLIVAAF SYSLFANLLGLIFDINTLNINWINSREVVKGKFSVLLIQLIIGLMVLISFLISNILFKNN RILSWLIIIIFVNIFNFVQIWYLSSKNLKM >gi|281297915|gb|ADDO01000023.1| GENE 41 38146 - 39486 218 446 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 91 394 112 405 458 88 26 1e-16 MSKIIIVGANHAGTACINTILAEKGNNEVVVYEANNNLSFLGCGMALWIGKQISNGDKLF YCDKETFEKNGATVHMETEISKIDFKAKKVYAKDKSGKEIIDSYDKLVLATGSLPIIPKI PGIDLENVQRVKIYQNAKEVIEKLKNPEIKKVTVVGAGYIGVELAEAFVRNGREVDLIDL ADTVLSSYYDEEFSQAMKENLKENGVNLHLGQSVMEIIGDENNKVKAVKTDKGQYETDMV LMAIGFRPNTSLGKDDLELFRNGAYVVDKHQRTSVKDVYAIGDCATIFDNTIENKNYIAL ATNAVRSGLVAAFNILGKDVESLGVQGSNGICIFDLKMVSTGLSLKKAKKLGLDVECTDF EDLQKPEFMEHDNPKVKIRIVYDKKTRVILGAQMASHYDMSMGIHMFSLAIYKKVTIDEL KLLDIFFLPHFNKPYNYITMAALGAK >gi|281297915|gb|ADDO01000023.1| GENE 42 39701 - 41689 2180 662 aa, chain + ## HITS:1 COG:BS_uvrB KEGG:ns NR:ns ## COG: BS_uvrB COG0556 # Protein_GI_number: 16080570 # Func_class: L Replication, recombination and repair # Function: Helicase subunit of the DNA excision repair complex # Organism: Bacillus subtilis # 2 654 4 658 661 852 67.0 0 MKFKIHSDYKPTGDQPQAIDKLVEGLNKGYKHQTLLGVTGSGKTFTMANVIERVQRPALV IAHNKTLAYQLCSELKEFFPENAVEYFVSYYDYYQPEAYVPMTDTFIEKDSSVNDEIDKL RHSATMSLFERRDVIIVASVSCIYGLGDPIDYENLAISLRPGMIRDRNEIMSKLVDIQYV RNDFDFSRGTFRVRGDVLEIFPASSSEKSIRVEFFGDEIDRISEVDALTGKVLRLLTHAY ITPASHYATTKTKVEKAIVTIEEELEERLKVLKDQDKLLEAQRLEQRTRYDLEMLEEMGY CNGIENYSRHLSQRPAGSRPYTLIDYFPDDFITIIDESHQSIPQIRGMFNGDRSRKETLV EYGFRLPSALDNRPLRFFEFESMMKQCIYVSATPGPYEREHEENSAEQIIRPTGLLDPQI FVRPVKNQIDDLVSEINKTVEKKERVLVTTLTKRMAEDLTKHFKEIGIKATYMHSDVETL ERMQIIKDLRQAKIDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSRTSLIQTAGRAA RNVSGKVIMYADNITESMKETIDETNRRRKIQDAYNKEHGIVPKSIIKDIRDVLNTTLVA ESDVSFKEEDFEDEFTKDEIQAMIDALKPQMYEAAEALDFEKAAEIRDKIKELKEKKKEA LV >gi|281297915|gb|ADDO01000023.1| GENE 43 41698 - 44511 3386 937 aa, chain + ## HITS:1 COG:BH3594 KEGG:ns NR:ns ## COG: BH3594 COG0178 # Protein_GI_number: 15616156 # Func_class: L Replication, recombination and repair # Function: Excinuclease ATPase subunit # Organism: Bacillus halodurans # 6 937 6 938 957 1193 62.0 0 MTEEFIKIKGARQHNLKNIDLTIPRNKFIVFTGLSGSGKSSLAFDTIYAEGQRRYVESLS SYARQFLGQMDKPEVDYIEGMSPSISIDQKTTSKNPRSTVGTVTEIYDYLRLLYARVGHA FCPKCGKEVTAFTIDQMVDKLMGLEERQKIQILSPIVRHRKGTHKKVLEKIRKEGFLRIF VDGQAHDISEDLELEKNKNHDIDVVIDRIIIKEKIESRLFESLELASGLSDGIVKVNVID GEDLIFSTKLACPECGIVIEEISPRSFSFNSPLGACDECKGLGFSKEVDEDLVIPNKDLS IEEGAIACYSSSKGTYYYEMIKAVADKFNFSTKKPIKEAPREFIDAIFNGYEGNLNFTFD SYFSGIKDYEGSFEGIKENLKRRYLETSSNKMIDKIDEFLIDSPCHKCHGSRLKEESLSI KVGGLNIFELTELSISKTLEFIKNLKLSDKEKIIAKELLKEIKDRLSFLFTVGLEYLTLS RMAGTLSGGEAQRIRLATQIGSQLVGVIYVLDEPSIGLHQRDNEKLLGALRNLTDIGNTL IVVEHDEETMRSCDEIVDIGPFAGRNGGRIVGQGSVLDIINSKESITGDFLSGRKKIEVP KERRPYTGKSIFVKGAREHNLKNIDVEFPLGQFIAVTGVSGSGKSSLVNEILFKALGQKI NKSRIKPGLYREITGLENLDKVVDIDQSPIGRTPRSNPATYTGTFDLIRDIFSITNEAKM RGYKKGRFSFNVKGGRCEACKGDGIIKVEMHFLPDVYVPCEVCKGQRYNRETLQVKYKGK NISEVLDMTVEEALEFFKNHPRVIRKLETLKDVGLSYLKLGQPSTQLSGGEAQRIKLATE LSKKATGSTIYILDEPTTGLHSYDVLKLIKVLNRLVDKGNTVVVIEHNLDVIKTADYIID LGPEGGDGGGEVLVTGRPLEICQCEKSYTGKFLKDIL >gi|281297915|gb|ADDO01000023.1| GENE 44 44514 - 45323 905 269 aa, chain + ## HITS:1 COG:all3278 KEGG:ns NR:ns ## COG: all3278 COG1376 # Protein_GI_number: 17230770 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Nostoc sp. PCC 7120 # 90 213 148 268 272 82 34.0 7e-16 MIMKKFIQKTVILFLLISLVPQMTFAQFVRENNFVDKKGAERTANIKKFQATMNIPISGT LDNKTKEALYNKDYKVWDMVTNPPSKGYWIAVNKSRRILTMYMGDKSLGKYPVTLGTSAT QTPSGRGKIGNMHKNPAWGGMNGKYKPVAADDPKNPLGERWMGLSLKGFSGYGIHGNIKP HQIGGYYSNGCIRMFNYDIEEVVFPQMKVGNPVWIGTDTELESWGLYQFSKVEKDKAVEK PQVTQQNQTNDVENEEKIENYQAVDLFEY >gi|281297915|gb|ADDO01000023.1| GENE 45 45493 - 46971 1712 492 aa, chain + ## HITS:1 COG:BH0109 KEGG:ns NR:ns ## COG: BH0109 COG0008 # Protein_GI_number: 15612672 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glutamyl- and glutaminyl-tRNA synthetases # Organism: Bacillus halodurans # 3 489 4 485 485 429 44.0 1e-120 MKEVRLRFAPSPTGFLHIGGLRTALYNYLFARNKGGKFILRIEDTDRTRFVQGAIENLID SLKWAGITYDEGVFVEDGKIVQKGEYGPYIQSQRLDIYKKYVDQLIENGYAYYCFCSKDR LDHLREEQRIKGQVPKYDGLCREIPLDEAKKRIASGEEYVVRLKLPHNKDITFNDLVRGK VTINTNEIDDQVLMKSDGFPTYHMAVVVDDHLMGITHVVRGEEWLSSTPKHVFLYQALGW ESPEYVHLPTVLNKDRKKLSKRQGDVSVEDFKERGYLPEGIINYLALVGWSPEDGDEIMN MDELVSKFDFDRVGKSGGIFDTDKLNWVNAHYIKQYPIEKLAELSIPYVVDSGLLKEAYI RENFEWYKVLIDTIKEAIDKLEDIPKHIGFLFGDLKITEDAAMEEINKEHVPDLLKTFIE VVNSHDEISLEVANGLMKEVQKKSGVKGKNLYMPVRAAISGNVHGPEMSNIIYLLGKDKL VQRAQKVLNNLK >gi|281297915|gb|ADDO01000023.1| GENE 46 46980 - 48173 1551 397 aa, chain + ## HITS:1 COG:CAC0710 KEGG:ns NR:ns ## COG: CAC0710 COG0126 # Protein_GI_number: 15893998 # Func_class: G Carbohydrate transport and metabolism # Function: 3-phosphoglycerate kinase # Organism: Clostridium acetobutylicum # 3 393 6 396 397 409 56.0 1e-114 MIKKLEDFNFNGKTVLVRVDFNVPIKDGKVKGDDRIKKSLPTIKYIKEQGGKIILMSHLG RPKGKYNKDLSLRPVAQRLSEILGEDILFIDEKEVVNKEVKDKVKNLKNAEIALLENLRF RPEEEKNEESFSKDLASLADIYVNDAFGTAHRAHASNVGVSKFLPSAAGFLLEKEIKYLK ESLENPKRPFVAILGGAKVSDKINLIKNLLDKIDSIVIVGAMANTFIKSMGKEVGKSLVE DDKLDLARQIIDQASKKGVNLILPEDFIEAREISDDAKGQVVDASSIDKDKMVLDIGPNS LKKIKMVLKDARTIVWNGPAGVFEVDEFSKGTVGIAKILADSDALTIVGGGDSVAAVEKA GVEDKISHISTGGGASLELLEGKVLPAIKALGEANEN >gi|281297915|gb|ADDO01000023.1| GENE 47 48163 - 48906 870 247 aa, chain + ## HITS:1 COG:SA0729 KEGG:ns NR:ns ## COG: SA0729 COG0149 # Protein_GI_number: 15926451 # Func_class: G Carbohydrate transport and metabolism # Function: Triosephosphate isomerase # Organism: Staphylococcus aureus N315 # 1 241 1 249 253 200 45.0 2e-51 MRTKFICGNWKMNKTAKEAEEFIKDLVKNDFKDVDVLIAPPFTSLDAVKRNSNGKIYVGS QNICKFNDGAYTGEVSGKMLKEFCDYVIIGHSERRTIFSEDYQTIREKILRAFENNLKVI LCLGEEAEVREKNKQNDFVKEEILAALDNLDFNRDNLTIAYEPIWAIGTGKTCSSEDAQD MCKFIRHTLSKLNKNESEFIRILYGGSVKGSNAKNLLACPDIDGALVGGASLEAKEFLKI INYKENI >gi|281297915|gb|ADDO01000023.1| GENE 48 48903 - 50414 1734 503 aa, chain + ## HITS:1 COG:MA4007 KEGG:ns NR:ns ## COG: MA4007 COG0696 # Protein_GI_number: 20092802 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoglyceromutase # Organism: Methanosarcina acetivorans str.C2A # 2 501 12 518 521 545 54.0 1e-154 MKPVLLMILDGFGLYKDYPGNAISLAKTENLDKLYETCPHTEIYASEKWVGLPMGQMGNS EVGHLNIGAGRVVFQDLTRIGNEIDNGNFYHNQMFLKAVENAKKNNSSLHLMGLVSKGGV HSHFKHLLALIDLAKKEGLKKVYIHVITDGRDVSPDASLEDVKELEDYLKKVGVGKIADI SGRYYAMDRDKRWERIKKYFDLVTEKYDNSNPNALDAIKSSYDNGVTDEFIKPVEIDCEG KIKDGDSLIFFNFRPDRARQIVRALVDENFDGFPRKEKNIFLVTMTQYDDTIPHTNIAYP ENRPTNTLGEILEKNHLRQLRIAETEKYAHVTFFFNGGREVMFEGEDRILVQSPKVATYD LKPEMSAPEITENLIEKLRENIYDCIILNFANPDMVGHTGVIPAAIKAVETVDNCIGKIL KEIKKLGGALLITADHGNCDMMLTKDNKPITSHTTNKVPFILYGVENVKLRSEGALCDIA PTILELLNIKQPKEMTGKSLIEK >gi|281297915|gb|ADDO01000023.1| GENE 49 50429 - 51715 1757 428 aa, chain + ## HITS:1 COG:BS_eno KEGG:ns NR:ns ## COG: BS_eno COG0148 # Protein_GI_number: 16080443 # Func_class: G Carbohydrate transport and metabolism # Function: Enolase # Organism: Bacillus subtilis # 1 427 1 428 430 556 68.0 1e-158 MSFIKDVYAREVLDSRGNPTVEVEVLTDQGGFGRAIVPSGASTGIHEACELRDGGKFYNG KGVEKAVDNVNNIIAEELLDAYVFDQVSIDKLLIDLDGTENKSKLGANAILGVSLAVARA AADELGLPLYSYIGGVNAKTLPVPMMNILNGGAHADNNVDIQEFMILPVGAKSFKEALRM GAETYAALKKELKSMGLSTAVGDEGGFAPNLSSNKEALDIIVKAIESAGYKAGKDIVLAI DAAASEFYKEKDNKYELKGEGISYDSKGISQYYKTLVETYPIVSIEDGLSEDDWQGWKYL TELIGDKVQLVGDDLFVTNTKRLKKGIDEKVSNSILIKLNQIGTLTETLDAIELAKRYNM TAIISHRSGETEDTTISDLVVATNAGFIKTGAPARSERMAKYNQLLRIEDELEGAGKYAG MDGFYNIK >gi|281297915|gb|ADDO01000023.1| GENE 50 51712 - 52137 302 141 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282882164|ref|ZP_06290803.1| ## NR: gi|282882164|ref|ZP_06290803.1| phosphohistidine phosphatase/mutase [Peptoniphilus lacrimalis 315-B] phosphohistidine phosphatase/mutase [Peptoniphilus lacrimalis 315-B] # 1 141 1 141 141 268 100.0 1e-70 MIIYFLRHGKAEVFGDDFSRELTTQGKIELNNKYKEFSKSLPKDKKIKIYSSPLKRACQS AEILSEILKTDFTINNEVLNYNIRDFIEGFERDKINIIISHEPFISTWIRDFCKVDVIVS RGSIHELQLDENLQGKLLGEF >gi|281297915|gb|ADDO01000023.1| GENE 51 52588 - 52983 424 131 aa, chain + ## HITS:1 COG:no KEGG:TDE1508 NR:ns ## KEGG: TDE1508 # Name: not_defined # Def: hypothetical protein # Organism: T.denticola # Pathway: not_defined # 3 129 2 126 131 69 37.0 4e-11 MSRKKIFGYISAIIGLLLVLAPKFITPVCPPMENGMFMKCHWMGNMTMGIGAVILVLAII FIIVKDSKISLGLSISNIAIGILEILNAHVLIGGCMKADMACRAKTIPFCTLLAGILVLV NIYYCMKERNS >gi|281297915|gb|ADDO01000023.1| GENE 52 52983 - 53660 298 225 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 203 1 201 223 119 34 5e-26 MESIIKTENLSKSFKRGSNTFFAVKNVNFTLNEAEFVNIIGRSGSGKSTFLNLLSGLLKP TEGKIFAKGKNIGDFSDREISKYRNETIGFVPQSLGTLPNLNVLENVSLPYYLFKRDESA YEKAAMLLDMMGILHLKDDFPRNLSGGELKRVLIARSMINSPELLILDEPTSDLDKNTTV EIMDLLKKINSKGTALIIVTHELDILKYGNILYQMEDGSLIKKRG >gi|281297915|gb|ADDO01000023.1| GENE 53 53663 - 55000 1522 445 aa, chain + ## HITS:1 COG:FN1251 KEGG:ns NR:ns ## COG: FN1251 COG0672 # Protein_GI_number: 19704586 # Func_class: P Inorganic ion transport and metabolism # Function: High-affinity Fe2+/Pb2+ permease # Organism: Fusobacterium nucleatum # 10 420 1 407 433 295 43.0 1e-79 MNLLKKRTSIFAMIVIMISLTFMSAFAAETKYANWVEVADAMSEHLQKAVEVYKPGDKDA KKAATDAVNVAYFKFYEKIGFEKTTMSAISGQRGSMVEHQFYRAKNSIKEDADPKEVKDE IDALITYLHEDAHTLDGTSGDSKSSGQSQEDANSLSTGQLMGELLKRFGTFFAVLGLTLR EGLEAILVVAAIAAYLSKTNNRTYLKGVYIGALLGVVFSAVLAGVFNIIANTVGEVESGM GQEIFEGIAMFLAVIVLFYVSNWMLSKSEVEVWNRYIKNKVEQSVSKGNYFALSFTSFLA VAREGAELILFFQGMRTSISENPMHMWVGLLVAAIILAIVYYLIAKVSVRLPLKPFFTFT SWLMFILCLSFLGKGIGELQEADVIGRTVVSWMNGWSAEAIGIYDRYENLIPQIILLVVT IVSVIYQNNRNKKIRAELEAGQEKK >gi|281297915|gb|ADDO01000023.1| GENE 54 55010 - 55675 1094 221 aa, chain + ## HITS:1 COG:TP0971 KEGG:ns NR:ns ## COG: TP0971 COG3470 # Protein_GI_number: 15639955 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized protein probably involved in high-affinity Fe2+ transport # Organism: Treponema pallidum # 57 221 34 204 204 233 66.0 3e-61 MLKKKNLFLIAMTLVCALTFTACGKKEEAKANNKANTSTEEKAPAEANKEKEGDAKAAAP GEDAGFEEFPIGDDQTKGPLVISGVYFQPVDMEPAGNSIPKEEADCHIEADITASQEGST LGYGVGDFVPWLKVKAYLQKKGSDHVQEVSFMPMNASDGPHYGANIKFDEGVGVYDVKFE VAAPGNDYLLHVDKETGVTGRFWTEPLVAEWTDFEWNGPQW >gi|281297915|gb|ADDO01000023.1| GENE 55 55772 - 56995 1106 407 aa, chain + ## HITS:1 COG:FN1355 KEGG:ns NR:ns ## COG: FN1355 COG4393 # Protein_GI_number: 19704690 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Fusobacterium nucleatum # 116 400 2 288 298 193 37.0 4e-49 MEAGIAFSLMISLILAYYTTKESRYKKYVIIISLVLGVIAAIVSIIIRNIPNFINRTELN FWSMVPIVISVFLILIFMIFEDKINAKIYDNFISASVVVYLVGICFYYLPYVFNQSNKFV YYGESAVSTIVLFRILGFVFGIIMMILSGLAIYKSSVKLEGKNLKIIVFLSLICSGISQF NVIIQRFYSKGIIPRNVNFFRVIAFIANHENVFLFATMLIMIAIPVILYKQNIKVNEEYS NRAQLRKIKYRMKNKRRWAIFFLVVLFINTFSLTAGKAYANKEQALSPPEDYQTENGMIV IPLSSLEDMHLHRYLYKAKDGVQMRFFCIKKSEGSYGVVLDACEICGPSGYFERGDDIIC KLCDVVMNRGTIGFKGGCNPIPFPYIVHDKKIKIAPKDLDALSYVFK >gi|281297915|gb|ADDO01000023.1| GENE 56 57004 - 58287 1320 427 aa, chain + ## HITS:1 COG:FN1354 KEGG:ns NR:ns ## COG: FN1354 COG0577 # Protein_GI_number: 19704689 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Fusobacterium nucleatum # 1 427 3 428 428 509 62.0 1e-144 MFWRIVKGALFRQKGKMALIAFTVALGASLATSMLNTMLGVGDKVNQELKTYGANINVLP KEASLLDDLYGMQEKEGQVQKYLKESELPNIKTIFWAYNIVDYTPYLNTWVSCNNDSKHT KMVGTWFNKHMDLPTGESIDTGMIRLKNWWEIQGEWLSEDDKDSVMLGKIFADRNGFKVG DEIQLKSNNLDKKVKVKGIFSSGSDEDAFIYSTLKTAQDFAGVTGVVNKVEVSALTTPDN DLARKAAKNPLSLTVKEWEVWYCTAYVSAICYQITEVMTDSVAKPIRQVAESEGDILNKT TLLMVLITVLTLIGSGLGISNLITASVMERSNEIGLQKAIGASNGRIIGIILVEIILTAI FGTVIGYGVGLLLTQIIGLTVFGSAIAPTAMVVPIVAILIILVTILGSIPAIRYLLNLNP TEVLHGR >gi|281297915|gb|ADDO01000023.1| GENE 57 58277 - 59425 1222 382 aa, chain + ## HITS:1 COG:FN1353 KEGG:ns NR:ns ## COG: FN1353 COG0577 # Protein_GI_number: 19704688 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Fusobacterium nucleatum # 6 382 2 400 400 327 50.0 2e-89 MAGKQSKNKFYLKMIMTSLARRRARMLTALLAIAMGATILSGLVTIYYDIPRQMGKEFRS YGANMLVIPTNPDKKITNDQLDEIKSLIPSGKLVGQAPYIYTNAKINEQPYMLAGTDLKG AKENSPYWLIDGSWPEKSREVLIGNEVSKALELKEGDKIIINTPKVHGEGSIDTNFVVSG VVTTGGKEEDLIFMSIDDISQLVKDKNFDVVEYSIEAEQNELSKIVSNISQKDASLTPQM VKRVTASQDIVLNKLQALVFIVTIIVLFIMMICVSTTMMAVVTERRKEIGLKKALGATNS SVIVDFLGEGAFLGVFGGLLGVVLGYIFANRVSISVFARKVSFLPLLVPMTIIVCVIITI VASLIPVSKTVDIDPALVLRGE >gi|281297915|gb|ADDO01000023.1| GENE 58 59437 - 60156 296 239 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225084369|ref|YP_002657150.1| ribosomal protein S16 [gamma proteobacterium NOR51-B] # 4 220 9 225 309 118 33 9e-26 MDILKLVDVSKIYGELKALDKINLSVEKGEWISIMGPSGSGKTTMMNIIGAMDKPSFGEV ILDGEDIAKKSPKELTVIRRDKIGLIFQQFHLVNYLSALENVMMSQYYHSMPDAQEAMEA LAAVGLAERAKHLPNQLSGGEQQRVCIARALINHPAILLADEPTGNLDEKNEYIVLDIFE KLHNAGSTIIVVTHDPEVGEESERMITLEHGKITKEEKMKRKRPVLDSTIKDEKLKEFI >gi|281297915|gb|ADDO01000023.1| GENE 59 60153 - 60578 588 141 aa, chain + ## HITS:1 COG:FN1351 KEGG:ns NR:ns ## COG: FN1351 COG4939 # Protein_GI_number: 19704686 # Func_class: S Function unknown # Function: Major membrane immunogen, membrane-anchored lipoprotein # Organism: Fusobacterium nucleatum # 1 141 1 139 140 75 39.0 2e-14 MRKILNVLIILSLGLVLVACGGDKKEEAPSVSYKDGTYQGESAKDERGGLVKVDISVKDN KIESCTMQNIDGDGKEKDESYGQSQNEGLYKIAQQAINLAKSYPDSLVEKGSPEGVDVIS GATETYKQFIEACNNALADAK >gi|281297915|gb|ADDO01000023.1| GENE 60 60686 - 61780 1008 364 aa, chain + ## HITS:1 COG:FN1349 KEGG:ns NR:ns ## COG: FN1349 COG0577 # Protein_GI_number: 19704684 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Fusobacterium nucleatum # 1 362 38 399 401 279 38.0 8e-75 MSSFIIFSLKNGMKSLSDRMGADIIVVPEGYDSKITGAILRGEPNTFFFDKDILNRVKRI PGVEKACGQVYLATLSAGCCSFPIQVIGIDFSDDFSVKPWLEKQIKSPIKAGQVVVGANI VGTINHKVKFFNQEFEIRGRLAKTGMGFDNSVFMTIEETHRLAKEYEKIINHPVAKKDDI SSILVKVEKNKDPKKIQKLINEEFKKEKVYPLLPRNIMTEVSDSAKNMLVYVYILIALIW ILAFFILSLVNTLSVKERKREFATIRVLGATKKKLSEIVLSESILINGTGAVIGSVVSFV LSITFNNAFSSLLNMPFLRPNIFLMLLMLIIVIILGTLLGPISSIIAINKMNKEELLLMQ RDND >gi|281297915|gb|ADDO01000023.1| GENE 61 61928 - 62224 320 98 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282882223|ref|ZP_06290862.1| ## NR: gi|282882223|ref|ZP_06290862.1| hypothetical protein HMPREF0628_1054 [Peptoniphilus lacrimalis 315-B] hypothetical protein HMPREF0628_1054 [Peptoniphilus lacrimalis 315-B] # 1 98 1 98 98 142 100.0 9e-33 MLLSKNRLKLIFLSGLLILIGLFYLFNGFKSEINYIAVKTRYSPDSFPEYITYQTKKGLY EYRGDLKFNKDTIRKDDKNTYYAEYIGTLKNKGLSIFK >gi|281297915|gb|ADDO01000023.1| GENE 62 62211 - 62513 247 100 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282882231|ref|ZP_06290870.1| ## NR: gi|282882231|ref|ZP_06290870.1| hypothetical protein HMPREF0628_1055 [Peptoniphilus lacrimalis 315-B] hypothetical protein HMPREF0628_1055 [Peptoniphilus lacrimalis 315-B] # 1 100 1 100 100 192 100.0 9e-48 MKKNIILAIVCLILLASVLPVFANSHTLGFDDDTVYVRLVKYRYDRSFPEYITHTENRGP RKFRGKLYLDYSSIRLENNNRYSAIYEGTCYDVGAAYAFK >gi|281297915|gb|ADDO01000023.1| GENE 63 62728 - 64227 423 499 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|145628098|ref|ZP_01783899.1| 30S ribosomal protein S20 [Haemophilus influenzae 22.1-21] # 1 495 6 523 524 167 25 2e-40 MKTSYILMIITILAKVFGLVREQTLAYFFGRGELADIFLVAFSLPMMITNVISGAVANGY IPMFNSIKAKSGQEKANEFTANLSNILAIIFLIISIVAIIFASPLVKLMAQGFTGSKLNT AILVTRIALLSVSATAVFSIYKAYLQIHDRFVVSVIHAIIMNLIIILFLAITYKFGIKFL GIGILLAFTFQYIIFIPYVKKTSYKHKWIIDFKNEDIKKLLRIILPILISSSAIEINFMI SKSLASELSHGGISILNYAYKLQSFVTGIVVTSIITAVYPQMAKYGSFKDFKGLRISTRD ALSTMSILVIPATFGLFTFALPIVELLFMRGRLNLDDATSIANVLRYYAFGVFAIGIREI LSRIYYSLDDTKRPVINSLVIVGVNIILSFVLAKFMGIVGLGLATTISFVVGGGFFAISS TKLIGKIFDKNLLLNLGKILLASLIMAAGSNLVFNILKLKLGSNLSLLLAIIFAACIYGI MLIILRVKEIKILLKKFNK >gi|281297915|gb|ADDO01000023.1| GENE 64 64287 - 64610 519 107 aa, chain + ## HITS:1 COG:no KEGG:Adeg_1221 NR:ns ## KEGG: Adeg_1221 # Name: not_defined # Def: hypothetical protein # Organism: A.degensii # Pathway: not_defined # 1 106 4 126 127 67 32.0 2e-10 MKVLFHVVEVEKWEDTLSNARDIINEIPDAQVAIVCMSKAAEIFKKYSGIDFHGLIDSPR VKFIIGKAALENNNIKEEELPSFVKVEKLVITKIAKLENEGYAYIRL >gi|281297915|gb|ADDO01000023.1| GENE 65 64662 - 64988 292 108 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282882239|ref|ZP_06290878.1| ## NR: gi|282882239|ref|ZP_06290878.1| hypothetical protein HMPREF0628_1058 [Peptoniphilus lacrimalis 315-B] hypothetical protein HMPREF0628_1058 [Peptoniphilus lacrimalis 315-B] # 54 108 1 55 55 67 100.0 4e-10 MLENYSAYIHPIELSYILIEFLDIVLINITLSTEKHIYEFIDKKTYRAKYITYMLILIPS AFYTYIKVYTNFDKVFLLPYLLLVFLIFLWCRKTKKNFKKYREDYKDK >gi|281297915|gb|ADDO01000023.1| GENE 66 64997 - 65500 408 167 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282882205|ref|ZP_06290844.1| ## NR: gi|282882205|ref|ZP_06290844.1| hypothetical protein HMPREF0628_1059 [Peptoniphilus lacrimalis 315-B] hypothetical protein HMPREF0628_1059 [Peptoniphilus lacrimalis 315-B] # 1 167 1 167 167 283 100.0 4e-75 MKRLKSIFFVVLSFLIVATTTIPIYAFEKDIVIDNSKIEDETVLRNNRYYYITEKDYPKT YYKELSSSDPSLSNTIQIFLDIIISKAYWPASVFTTIMHIGNEIYNFNMDGELKVTTVEH NVYRVDRLTGEKIYIRDKSYQTILLELFRRTSSGLEYVRSYSHTIYY >gi|281297915|gb|ADDO01000023.1| GENE 67 65696 - 66085 466 129 aa, chain + ## HITS:1 COG:no KEGG:ELI_2170 NR:ns ## KEGG: ELI_2170 # Name: not_defined # Def: hypothetical protein # Organism: E.limosum # Pathway: not_defined # 7 125 4 123 123 90 46.0 2e-17 MVSLERIDEVNELLDEICEELPSYAFEHLNGGITLSEEVKYHPESHNEDLLILGQYERSI LGLSITIFYGSVYLMYGYLDREDLKDKLRHVLFHEFTHHLEFLARNYDLEIEDEEFMEDY RKRWKDYED >gi|281297915|gb|ADDO01000023.1| GENE 68 66075 - 66911 986 278 aa, chain + ## HITS:1 COG:sll0897 KEGG:ns NR:ns ## COG: sll0897 COG0484 # Protein_GI_number: 16332061 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: DnaJ-class molecular chaperone with C-terminal Zn finger domain # Organism: Synechocystis # 212 274 4 67 377 75 54.0 7e-14 MKIKGYFYKGLGTIIDVFLKIVISLVNFLVDIFSTIRHAIGLLISMGGCLFLVFIFNPYF LYGVILNPFLFTLIVLIVIVPFLGKISLSYLKYLHYVATEYFYDRADYYLLGKNYGHKDF SSYSREYIDKLEKERLKREEERRKQEEEEWNRRFENFTGGFTWTTFDDFEDFFRNAQSGS YNYGNYGENQGNYRDNSYGPSMGLNFKKQYEDACDTLGVNYSADKYEVKLQYRKMAKKYH PDINKEEGATEKFQKINSAYEFLNDSNIERYKKLSGNN >gi|281297915|gb|ADDO01000023.1| GENE 69 66977 - 67561 699 194 aa, chain - ## HITS:1 COG:no KEGG:TDE2372 NR:ns ## KEGG: TDE2372 # Name: not_defined # Def: hypothetical protein # Organism: T.denticola # Pathway: not_defined # 1 193 1 197 202 64 27.0 2e-09 MKKFFIILIIISTLVACGKNQNTTENQNDKNKTNVKESTQISVPESKKLTFNEFNFDTID IDGNRIKSNDFYKDSKINALIIWATYGNDCKDTLVSINNLSKNYDEKDLKVSAFILDTSA DTSTNIEEAKNIIKENNLNFKNLLPNPTTEDALKTVEKIPLLLIMDSQGKILNAYEGNLS QEVMQKIIDDHLKK >gi|281297915|gb|ADDO01000023.1| GENE 70 67714 - 68034 573 106 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282882193|ref|ZP_06290832.1| ## NR: gi|282882193|ref|ZP_06290832.1| putative V-type sodium ATP synthase subunit G [Peptoniphilus lacrimalis 315-B] putative V-type sodium ATP synthase subunit G [Peptoniphilus lacrimalis 315-B] # 1 106 1 106 106 86 100.0 6e-16 MSVDAISQVKKAEEEASLIVEKAKKNAKKVVENAEIEAEEIYKTTIEKAKEEASLKRQQA LQKGKEDSTPIVENAKKEAEEIKNVDEGSLKKVVKSIVEKVVIEWQ >gi|281297915|gb|ADDO01000023.1| GENE 71 68025 - 69965 2033 646 aa, chain + ## HITS:1 COG:FN1741 KEGG:ns NR:ns ## COG: FN1741 COG1269 # Protein_GI_number: 19705062 # Func_class: C Energy production and conversion # Function: Archaeal/vacuolar-type H+-ATPase subunit I # Organism: Fusobacterium nucleatum # 1 635 1 635 638 404 39.0 1e-112 MAIVDMSKFYLLAFKEKRESLLKELQKFKYVHLIDSGNDFSKEDLSAVSRSEELIDIDDY LNKSKYVIERLEKIEDKKPALESLKEGKKHFTYEEIKNRARKFNFSQIYKEISSIIDEIE KKEAENQEILNKVSELLPYKAIDIPLEDLKLTKFSKIYLGTIPQRYKENFEELLKENDSV YFNVLHTDKNYAYYLIICHKSDDEDVIDAFRKMGFTLVNFKEKGTINENINSLRERKSQN LDSIDTLNKELKNYLKYLDDFKIYYEYQSNEKLKVISSEKFLRTKNLDLIEGYVPSKFLK SFEEAIQLICGDDYYLYKKEADRNSHEVPIMLKNNKFVGPFEMLTEMYSMPKYNEIDPTP FFAPFYFIFAGIMIGDLGYGLLVFIGSLLALRFFNLDKATKRFMTFFNYLSISAMIFGLV FGSFFGGIIPLPTLINPAEDIMEMLMLSLLLGGVHIFFALGIKAYMDIRDNKPKDAFYDV GLWYMALIGAIGYGLSKAVSMNPIVVKILFYAMIIAMVGIVLTGGRSEKTTLAKFGWGVY ALYGISSYIGDFVSYLRLMALVLSGSFIGLAVNMIAGMLFGSSIIGKLFAIVIFLVFQAF NCFLCYLSAYVHTARLTYVEMFNKFYEGGGVPFKKMVEDSKYFNID >gi|281297915|gb|ADDO01000023.1| GENE 72 69979 - 70446 772 155 aa, chain + ## HITS:1 COG:FN1740 KEGG:ns NR:ns ## COG: FN1740 COG0636 # Protein_GI_number: 19705061 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K # Organism: Fusobacterium nucleatum # 4 152 7 155 160 140 57.0 1e-33 MKELFTQYPGLCLASLGVFLAVALAGVGSAIGVGLAGEAAAGIVIEEPEKFGKSLVLQLL PGTQGLYGFVIGLFILFKISPDLAAQSGFMYMVSGGVIGLGGLCSAIAQGKVSVAGLNIL AKNEEQQTKGIIYAVMVELYAILAFATAFFILFRA >gi|281297915|gb|ADDO01000023.1| GENE 73 70456 - 71010 750 184 aa, chain + ## HITS:1 COG:FN1739 KEGG:ns NR:ns ## COG: FN1739 COG1390 # Protein_GI_number: 19705060 # Func_class: C Energy production and conversion # Function: Archaeal/vacuolar-type H+-ATPase subunit E # Organism: Fusobacterium nucleatum # 1 182 1 182 183 79 30.0 3e-15 MPGIDNIIKKITDEAKERAKNIENQADKKKEAIIGEKTEEALEIKKRILTKSDEESKSII EKANSTANLKARDIILLAREEIIERVLNLVKDELNNLTSEDFIKYLKASTKNLNLTSKDE VKIPKKYYEDIKKEDLDLNISSEFIESGFLVKKGNLIYNGDFSSIVDSMREDLMPLISDE LFKK >gi|281297915|gb|ADDO01000023.1| GENE 74 71019 - 72014 941 331 aa, chain + ## HITS:1 COG:FN1738 KEGG:ns NR:ns ## COG: FN1738 COG1527 # Protein_GI_number: 19705059 # Func_class: C Energy production and conversion # Function: Archaeal/vacuolar-type H+-ATPase subunit C # Organism: Fusobacterium nucleatum # 1 331 2 334 334 196 36.0 6e-50 MDRSKFIQSSSWIRVLEKRLLSHQFFLRLADAPSLKDALRMLNDTIYQTSISKLEKDTDY EKALSQELLRFYKEMYEISPSNIPIDFTVVKYYYHNLKVMAKEYVKKEDLSHLYVPLGNL DIFGLRKLLQENSSSKNEYLREVKETIRLYEKTKRPSDIDINLDRCYFKSLLKLADEADE DIFYSYVKDTIDFKNIRSLMRANAEGADLEFLTDILIDGGNIYKDNFYNYLNTKIEPDSK LFKYSNIYKYVKQGTEFFGKGRSLSRFELLVDNEMVDLIKNAKKITYGPEVIFAHVIAKE IELRNLRIIFVAKQNGLSSEFIRERLRDTYV >gi|281297915|gb|ADDO01000023.1| GENE 75 72007 - 72315 438 102 aa, chain + ## HITS:1 COG:FN1737 KEGG:ns NR:ns ## COG: FN1737 COG1436 # Protein_GI_number: 19705058 # Func_class: C Energy production and conversion # Function: Archaeal/vacuolar-type H+-ATPase subunit F # Organism: Fusobacterium nucleatum # 1 102 4 105 105 124 62.0 3e-29 MYKIAVIGDKDSVLAFMALGIDVFIAYEKEETRDIVDKLSRKDYGVIFITEQLAAKIPAT IKRYDEKIIPAIILIPSNQGTLGIGINNLNKNVEKAVGANIL >gi|281297915|gb|ADDO01000023.1| GENE 76 72325 - 74100 2008 591 aa, chain + ## HITS:1 COG:SPy0154 KEGG:ns NR:ns ## COG: SPy0154 COG1155 # Protein_GI_number: 15674362 # Func_class: C Energy production and conversion # Function: Archaeal/vacuolar-type H+-ATPase subunit A # Organism: Streptococcus pyogenes M1 GAS # 3 586 2 590 591 756 64.0 0 MRSKGKILKVSGPLVVADGMKDANVYDVVEVSKDKLIGEIIEMRGDRASIQVYEETTGIG PGDEVVSIGSPLSVELGPGLLEQMFDGIQRPLEALKNSNGDFLVRGGTFEHLDREKKWEF KPQAKVGDILGAGDILGTVEETSVITHKIMVPYGVKGKVKEIKSGIFTVADTIAILETEN GDKELNMIQRWPVRRGRPYREKIDPRAPLITGQRVIDTFFPITKGGTAAIPGPFGSGKTV VQHQLAKWADAQVVVYVGCGERGNEMTDVLMEFPELIDQKTGESIMKRTVLIANTSNMPV AAREASIYTGITISEYFRDMGYSVAMMADSTSRWAEALREMSGRLEEMPGDEGYPAYLSS RIAQFYERAGRVRCLGTDEREGALSVIGAVSPPGGDISEPVTQNTLRIVKIFWKLDYDLS YQRHFPAINWIDSYSLYQDKVDKYLDENIDKNFSKHRRRAIGLLQEESSLLEIVRLVGRD TLSDGDQLKLDITKSLREDFLQQNAFNDIDTYCSLNKQYKMLDTILKFYDAGLKALEKGA YLKEIEESPVIDKIARMKYIAEENISNIDSLQEEIAKEMKSLERGGTEEDA >gi|281297915|gb|ADDO01000023.1| GENE 77 74093 - 75487 2007 464 aa, chain + ## HITS:1 COG:FN1734 KEGG:ns NR:ns ## COG: FN1734 COG1156 # Protein_GI_number: 19705055 # Func_class: C Energy production and conversion # Function: Archaeal/vacuolar-type H+-ATPase subunit B # Organism: Fusobacterium nucleatum # 1 457 1 458 458 733 79.0 0 MLKEYNSIAEVVGPLMVVEGVGGVNYEELVDIELQTGEKRRGRVIEIDEDKAMVQIFEGS SGINLTRTKVRFLGKPLELGVSPDMIGRVFDGLGNPIDNGPKIIAKKKIDINGTPINPVS RDYPEEFIQTGISSIDGLNTLVRGQKLPIFSLAGLPHNQLAAQIARQAKVLSGGNFAVVF TAMGITFEEAQYFIDDLTKTGAIDRSVLFMNLADDPAIERLATPKMALTCAEYLAFELDM HVLVLMTDMTNYAEALREVSAARKEVPGRRGYPGYLYTDLAGLYERAGRIKGRKGSITQI PILTMPEGDITHPIPDLTGYITEGQIILSQELYKQGLEPPINVIPSLSRLKDKGIGQGKT REDHADTMNQIYAAYTSGKSAKELSAILGETALTKSDKAFAKFADEFEKNYVSQGFETNR NIEETLDLGWKLLDIIPRGELKRIDDKLIDKYLGEKEEDLKEEE >gi|281297915|gb|ADDO01000023.1| GENE 78 75565 - 76257 1005 230 aa, chain + ## HITS:1 COG:FN1733 KEGG:ns NR:ns ## COG: FN1733 COG1394 # Protein_GI_number: 19705054 # Func_class: C Energy production and conversion # Function: Archaeal/vacuolar-type H+-ATPase subunit D # Organism: Fusobacterium nucleatum # 1 212 1 210 211 207 62.0 1e-53 MTILKVNPTRMTQTTLKKRLLTATRGHKLLKDKQDELMRQFIDLIKENKKLRVEVEKELH DCFSDFLMASALMSPEMLEESIVLPSIKTMVKISKENVMSVEIPKMEFIVEKTSQHARKY PYGYIMTTSDLDSAIDKLKTVMDRLLLLAQKEKASQLMADEIEKTRRRVNALEYKTIPDL KDTIKYIRAKLDESERANITRLMKVKDIISKEEEKEPVKYDKVDFNFDTL >gi|281297915|gb|ADDO01000023.1| GENE 79 76380 - 77894 1797 504 aa, chain + ## HITS:1 COG:CAC2700_2 KEGG:ns NR:ns ## COG: CAC2700_2 COG0519 # Protein_GI_number: 15895957 # Func_class: F Nucleotide transport and metabolism # Function: GMP synthase, PP-ATPase domain/subunit # Organism: Clostridium acetobutylicum # 190 504 1 316 316 412 65.0 1e-114 MILVVDFGGQYKELIARRVRELNIYCEVISYKNALEKAKDEKVKGIIFTGGPSSVYEENS PQIEKEIFELNKPILGLCYGMQLMAHTLGGKVIGTSQREFGKTKIITKESIIFENLNEEE SVWMSHNDRVEELPEGFEIIAESKNCPVAAMENTSKNLYGFQFHPEVNHTIHGKEMLKNF LLNICHEEQNWTMKNYAKIAIEDIRKKVGNGKVLLALSGGVDSSVTAALVSKAIGENLTC IFVDHGLMRKNEGDEVEEAFKNSGMKFIRIDAEERFLNRLKKVTDPERKRKIIGEEFIRV FEEEGRKIKSVDYLAQGTIYPDVIESGLGGAVIKSHHNVGGLPDVVDFKELIEPLRMLFK DEVRKLGRELGLADYLVDRQPFPGPGLAIRIMGEITKEKLDILRDADKIFREELEKSMDR EEISQYFAVLTDNKSVGVMGDYRTYDYTLALRAVKTSDFMTADWVRIPYEVLDKISVRIV NEVDHINRIVYDITTKPPATIEWE >gi|281297915|gb|ADDO01000023.1| GENE 80 77977 - 78795 725 272 aa, chain - ## HITS:1 COG:BH1285 KEGG:ns NR:ns ## COG: BH1285 COG1191 # Protein_GI_number: 15613848 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit # Organism: Bacillus halodurans # 31 212 45 228 235 63 29.0 4e-10 MKVIQEIYLIVILTNTMKDNNNLFERYSKNKNDISLRNKIVLDNLSLVPYTINHYHLFID GVHDYEEMLQDGYIALIKAVESFDYRLGFKFSSYAIKCILSLTRTRIDYNKDLSLNTPIN EGAETEIEMIDTIEDESIDIEKDIINENFYREIKKNLSFNLNDIELKIIKAIYGIDQEVR SYKDLSFILDLDINYLKKIKRQAENKIRKSSYFKKLYNERDPISYYPKMMFDNDKSSPTN KINSPVERIVIEKQEQERYIIKNTLKHIKSTS >gi|281297915|gb|ADDO01000023.1| GENE 81 78731 - 79045 221 104 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282882220|ref|ZP_06290859.1| ## NR: gi|282882220|ref|ZP_06290859.1| conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] # 1 104 1 104 104 150 100.0 3e-35 MEVRNLNEYKYLCLEKEHLINDIEHQKELLKKLESRFERCNNEIKEIDDFLNSIDDAIIK NIVIMKFIDGRTWIDISLELGSSSESYSRNLLNRYLDKYHERQQ >gi|281297915|gb|ADDO01000023.1| GENE 82 79088 - 79924 1190 278 aa, chain - ## HITS:1 COG:no KEGG:Clole_0872 NR:ns ## KEGG: Clole_0872 # Name: not_defined # Def: hypothetical protein # Organism: C.lentocellum # Pathway: not_defined # 1 278 1 277 278 276 52.0 5e-73 MAIDLAAQYLPYVDEQLTNESKISLITNKDFEFTGAKTVKIYKINTSKMNDYDRNGEGKY QGSRYGAIANLGGSTEEFTLSQDRSFTFAIDKLDKDETKGSLESASALARQNREVIIPEV DKYTIEKIIAGAGTKAEKKLTATNIYDEILNANTVLDNNLVPDGNRYLLVTPDVYLLIKK NKDFILSTDVGQEMRVKGVIASIDGLTVIKVPKIVVPEDFGFLLVHPCATVAPVKLQDYK VHQDPPGINGNLVEGRFCYDAFVLDNKKMAIYYNKMGA >gi|281297915|gb|ADDO01000023.1| GENE 83 79942 - 80433 489 163 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282882212|ref|ZP_06290851.1| ## NR: gi|282882212|ref|ZP_06290851.1| conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] # 1 163 1 163 163 212 100.0 7e-54 MEDLKNKEMELENSNNEDIENSNNEDIEQESNINEKSYSEDEVNEIVQRRLARERKKFNK ILDSDEFDKELIKREKAISLREMKADAKEFLSENNIPPVFIDLVNFDDRQKMEDSLKAIE NIKSKYIEPWISEEVRKRFAGKTPKISVCNNFKSDPLEQAFKL >gi|281297915|gb|ADDO01000023.1| GENE 84 80841 - 81209 394 122 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282882206|ref|ZP_06290845.1| ## NR: gi|282882206|ref|ZP_06290845.1| hypothetical protein HMPREF0628_1077 [Peptoniphilus lacrimalis 315-B] hypothetical protein HMPREF0628_1077 [Peptoniphilus lacrimalis 315-B] # 1 122 1 122 122 203 100.0 3e-51 MNLINIFEKDSINNNEIKDFFEDFDFCIKYLGNTRNYEIAFVKKDFDLEDNDIVVVIEYR DFFNVVGELIKNTNITLRRVIKIGDQMQLRDIQNIYAPINIGSSEEVYKILGKAIYRLCL FD >gi|281297915|gb|ADDO01000023.1| GENE 85 81226 - 82047 574 273 aa, chain - ## HITS:1 COG:BS_yqaM KEGG:ns NR:ns ## COG: BS_yqaM COG1484 # Protein_GI_number: 16079679 # Func_class: L Replication, recombination and repair # Function: DNA replication protein # Organism: Bacillus subtilis # 68 267 99 307 313 94 32.0 2e-19 MNQEINYQKILANLTSEQPFDRKEHQKQAVLREMNSFNETPGNKTHCKRCKGKGYIMGVI RKFDSYYTIVKECDCMANIKACREVKNSGMAQLLNYSFNNYKVKSNWQADIKRRAMANAN TKDWFFIGGQSGSGKTHICCAIANYQRRKGVRVKYIVWTDTINKLKDFEDDSYMSELKKV ECLYIDDLFKKIGTKYNDGLTSSDITKTWELINYRNLNNLKTIISSEMTLIDILNVDESL GSRIKQSAKNYIVTVPGDVRKNMRINQMSFMDN >gi|281297915|gb|ADDO01000023.1| GENE 86 81998 - 82777 674 259 aa, chain - ## HITS:1 COG:no KEGG:CLD_2033 NR:ns ## KEGG: CLD_2033 # Name: not_defined # Def: GP49-like protein # Organism: C.botulinum_B1 # Pathway: not_defined # 5 168 12 167 288 111 44.0 3e-23 MGTNKRFYWIKLNTNFFIQREVKSIRRTENGLLYIVIYLKLLLLSANTGGLLKFENTEDS LVEELSIEIDEEPEDVKNAIEVLQKKNLITISSNDEFFLNKAPDMVGSETAAAERMRKSR AKKKELEKNVTMLPNVTNCYTEIDIDKEIDIDKEIDIDKRDKRLDDDKAEYVTKINGLIK NKISSSSLENFINNYGVDTLKSLIDEIKVSDYLKENINFNHLSDDFINKAISGKYRTFKN EVNNEPRNKLPKDFSQFNL >gi|281297915|gb|ADDO01000023.1| GENE 87 82849 - 82938 69 29 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLISKLVINKKDLPGSNKFPNSSLVGYDK >gi|281297915|gb|ADDO01000023.1| GENE 88 82928 - 83137 394 69 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282882207|ref|ZP_06290846.1| ## NR: gi|282882207|ref|ZP_06290846.1| conserved domain protein [Peptoniphilus lacrimalis 315-B] conserved domain protein [Peptoniphilus lacrimalis 315-B] # 1 69 1 69 69 118 100.0 1e-25 MATLVKVDVVSDVLCISKNKAYQVMRMINKELEDKGFITIQGRVPLDYLKMRFNLCDEDF NKEVVKDVN >gi|281297915|gb|ADDO01000023.1| GENE 89 83154 - 83363 379 69 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282882217|ref|ZP_06290856.1| ## NR: gi|282882217|ref|ZP_06290856.1| toxin-antitoxin system, antitoxin component, Xre family [Peptoniphilus lacrimalis 315-B] toxin-antitoxin system, antitoxin component, Xre family [Peptoniphilus lacrimalis 315-B] # 1 69 1 69 69 91 100.0 2e-17 MNDIILKLNKRLIKKKLIELNLTQSEFANKNNIAQSTLSNVLNGRQATTKTLNKIADGLG ISVIELLED >gi|281297915|gb|ADDO01000023.1| GENE 90 83382 - 83579 389 65 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282882170|ref|ZP_06290809.1| ## NR: gi|282882170|ref|ZP_06290809.1| toxin-antitoxin system, antitoxin component, Xre family [Peptoniphilus lacrimalis 315-B] toxin-antitoxin system, antitoxin component, Xre family [Peptoniphilus lacrimalis 315-B] # 1 65 1 65 65 99 100.0 6e-20 MKIKEFEVNLMLAEKNLRQSDLAKLSGISRVTINSVLNGKTANARTIHAIAKALNVPVRQ IITVD >gi|281297915|gb|ADDO01000023.1| GENE 91 83739 - 84446 775 235 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282882172|ref|ZP_06290811.1| ## NR: gi|282882172|ref|ZP_06290811.1| phage related transcriptional regulator [Peptoniphilus lacrimalis 315-B] phage related transcriptional regulator [Peptoniphilus lacrimalis 315-B] # 1 235 1 235 235 362 100.0 1e-98 MTLGEKIRKYRILNNLTMKELSEKLGMSISAIQKYENGTVIPKTDIIQKISKILNVPINK LLEETSAKNDKEDMILEKIIELTKYDQIKWIKCEDKDIKNKYKLYEDDFLEISKIIDDSI GYSSYKSELDIENDIKELSIKIMKNGFITNVKDTLYILYDEGYVDFQDKKIYELKAFQYK YHDFNYLIEFTNRELLTNLFSIVNEKANINDGDIDEILLDLDKDLNNLIDDTYGF >gi|281297915|gb|ADDO01000023.1| GENE 92 84601 - 85683 724 360 aa, chain + ## HITS:1 COG:BS_ydcL KEGG:ns NR:ns ## COG: BS_ydcL COG0582 # Protein_GI_number: 16077547 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Bacillus subtilis # 1 347 1 358 368 133 31.0 4e-31 MTSKRMKNNFNKWYCSFRYVNLDGETKQKKKEGFSTKKEADEYERNFLNNIKFNPEMNFK SLYKMYLEDMKPRIKEHTLASKEYITENKILPYFKDMKISGIGSIEVQRWQNLLLQAKNP KTNKPYAPTYLKTINNQLTAIFNYAVKFHNLKNNPVHKVGTIGEKNAPEKEIWSIEEFNE FINLVEDKTLHLGFNILYWSGCRIGELLALTWNDIDFKNNIINIDKSYQRLNCKDVITEP KTKKSIRKITVVSDVIKEIESYKKLFYKPGDDDRIFNCTKHKFEHAIINICKRNNLKRIR IHDLRHSHASLLLNEGINIVALSKRLGHEKVSTTLNTYSHMIPSEDKILNVMEKLSVTKS Prediction of potential genes in microbial genomes Time: Mon Jul 18 12:16:08 2011 Seq name: gi|281297912|gb|ADDO01000024.1| Peptoniphilus lacrimalis 315-B contig00064, whole genome shotgun sequence Length of sequence - 932 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 496 342 ## gi|282882242|ref|ZP_06290880.1| putative lipoprotein - Prom 657 - 716 9.8 Predicted protein(s) >gi|281297912|gb|ADDO01000024.1| GENE 1 1 - 496 342 165 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282882242|ref|ZP_06290880.1| ## NR: gi|282882242|ref|ZP_06290880.1| putative lipoprotein [Peptoniphilus lacrimalis 315-B] putative lipoprotein [Peptoniphilus lacrimalis 315-B] # 14 165 14 165 165 259 100.0 6e-68 MKKLLKILLIFILTFSISCSVFGQENGVQVEKLVKNVILDGKEVILPLYIINGNTYFKID GALKQVGIDISFNEKTNQIEFLGHKLSASGEKSDGKNFDNSSEENYRQPEEDEFVNCGCS CKHHSMEEYNSCPCCKGKTPLYHKEESKSESSKEEKNIETKEDEF Prediction of potential genes in microbial genomes Time: Mon Jul 18 12:16:20 2011 Seq name: gi|281297900|gb|ADDO01000025.1| Peptoniphilus lacrimalis 315-B contig00058, whole genome shotgun sequence Length of sequence - 12519 bp Number of predicted genes - 12, with homology - 12 Number of transcription units - 6, operones - 4 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 25/0.000 + CDS 65 - 814 923 ## COG1192 ATPases involved in chromosome partitioning 2 1 Op 2 . + CDS 811 - 1665 1004 ## COG1475 Predicted transcriptional regulators 3 1 Op 3 . + CDS 1662 - 2549 946 ## COG0384 Predicted epimerase, PhzC/PhzF homolog 4 1 Op 4 . + CDS 2549 - 2971 345 ## gi|300814753|ref|ZP_07095001.1| hypothetical protein HMPREF9131_0844 + Term 2974 - 3017 1.8 - Term 3090 - 3156 4.7 5 2 Tu 1 . - CDS 3191 - 3523 510 ## Clos_0531 membrane protein - Prom 3600 - 3659 11.7 + Prom 3487 - 3546 6.8 6 3 Op 1 . + CDS 3601 - 3918 324 ## COG3323 Uncharacterized protein conserved in bacteria 7 3 Op 2 . + CDS 3982 - 5454 2200 ## COG4690 Dipeptidase + Term 5478 - 5510 2.0 8 4 Tu 1 . - CDS 5892 - 6896 1100 ## Dtox_1961 Ig domain-containing protein group 2 domain-containing protein - Prom 6936 - 6995 8.7 - TRNA 7108 - 7184 80.2 # Arg CCT 0 0 - Term 7204 - 7245 7.6 9 5 Op 1 9/0.000 - CDS 7250 - 8608 1636 ## COG2848 Uncharacterized conserved protein 10 5 Op 2 . - CDS 8621 - 8890 413 ## COG3830 ACT domain-containing protein - Prom 8937 - 8996 14.0 - Term 9546 - 9589 -0.4 11 6 Op 1 . - CDS 9797 - 11029 889 ## gi|282882249|ref|ZP_06290886.1| hypothetical protein HMPREF0628_1583 12 6 Op 2 . - CDS 11061 - 12308 1140 ## COG0534 Na+-driven multidrug efflux pump - Prom 12449 - 12508 13.9 Predicted protein(s) >gi|281297900|gb|ADDO01000025.1| GENE 1 65 - 814 923 249 aa, chain + ## HITS:1 COG:BS_soj KEGG:ns NR:ns ## COG: BS_soj COG1192 # Protein_GI_number: 16081149 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Bacillus subtilis # 1 245 1 249 253 275 54.0 8e-74 MASVFTVFNQKGGVGKTTTVVNLSHALAKIGKKVLIVDMDPQGNSTSGLGFYDFDLMIYD FLMENNGKALYKTNYENVHIIPANREFSGVEIELAKGGDWQFKLKKALEPVIKDYDYVLI DSPPSLGILSMMSLIASNYIIIPVQCEYYALEGVSQLMDTINLVKDNFNPNLEIGGVLMC MFDGRTNLSLQVVEEVKNFFKGKVYKTIIPRNVRLAEAPSFGMTILQYDPLSKGAKAYLN LAKEIEGEV >gi|281297900|gb|ADDO01000025.1| GENE 2 811 - 1665 1004 284 aa, chain + ## HITS:1 COG:CAC3729 KEGG:ns NR:ns ## COG: CAC3729 COG1475 # Protein_GI_number: 15896960 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Clostridium acetobutylicum # 1 277 1 281 283 209 50.0 5e-54 MTKKRSLGRGIGNFLSSEENIAQIINSDKEKNFLYIDINLIERNSDQPRKVFDKKSLEEL AESIKNYGIIQPLVLKENGDSYIVVSGERRLRAAKIAGLEKVPAIIKDVDEEISDKISLI ENIQREDLNPIEEAKAFRYLLDEYNLKQEDLAKEMGKSRQYVGNTIRLLNLDSRVIDLIL NGELSQSHGKALLAIKDKEKQYKEALKIVKNSISVSKTEKNTSKNRYEKLDIFTRDIKDK LSSHLSTKVNFKGRGKHKKLEIEYYSEEDLERICDLILGGNLER >gi|281297900|gb|ADDO01000025.1| GENE 3 1662 - 2549 946 295 aa, chain + ## HITS:1 COG:FN1427 KEGG:ns NR:ns ## COG: FN1427 COG0384 # Protein_GI_number: 19704759 # Func_class: R General function prediction only # Function: Predicted epimerase, PhzC/PhzF homolog # Organism: Fusobacterium nucleatum # 7 285 10 284 293 123 27.0 3e-28 MTRFYNMYLVSAFTDKPFKGNSTGVIIDKGDLTEEEKLNIAKDINQSVTVFIRRMDTGVY ETRFYTPHGEIKLCGHATMATFYAIAKNEYILPIEEGINKIMQFTALGKVSVELEYENYQ IKNIYMNLKMKNEEKVDNLDKVLSILGLKKEDIGLPYVDCMPKKISTGLCDIIIPVKNED ILKNIQVDFKEAKKLSEIEDIISYHVFTTKDGINIHQRTFSPVIGVNEETGSGTSTAATM YYLHNNSYTKSNEIYSTQGTYVDRVSKVIAQYKEKDGIVRVGGRAYTFMNGVLEI >gi|281297900|gb|ADDO01000025.1| GENE 4 2549 - 2971 345 140 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|300814753|ref|ZP_07095001.1| ## NR: gi|300814753|ref|ZP_07095001.1| hypothetical protein HMPREF9131_0844 [Peptoniphilus sp. oral taxon 836 str. F0141] hypothetical protein HMPREF9131_0844 [Peptoniphilus sp. oral taxon 836 str. F0141] # 1 140 1 140 140 206 99.0 6e-52 MRKNKKKSNLWRIILILFFVILLFVGTSIISSRNKLVDIEVKDVDYIEIIANKSQVMQTI KNNKEIKEIVYSLNKLRGKKSNRDTSADTINYINVYFNSGKKIEFVKSGQVIRVDNKWYA LNRRNSKLIEKIINKYQTID >gi|281297900|gb|ADDO01000025.1| GENE 5 3191 - 3523 510 110 aa, chain - ## HITS:1 COG:no KEGG:Clos_0531 NR:ns ## KEGG: Clos_0531 # Name: not_defined # Def: membrane protein # Organism: A.oremlandii # Pathway: not_defined # 4 105 22 123 126 75 42.0 7e-13 MLKLIIKILVSALAILVASWLPGGFEVDSFGVAISAAVVIGLLDWAINRFTGIDASPFGR GSVGFIAAAIILFITGKLVDGFHVTLIGAVVGAVILGIVDIFIPADKRPM >gi|281297900|gb|ADDO01000025.1| GENE 6 3601 - 3918 324 105 aa, chain + ## HITS:1 COG:SA1388_2 KEGG:ns NR:ns ## COG: SA1388_2 COG3323 # Protein_GI_number: 15927139 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 4 102 1 99 105 80 39.0 1e-15 MKYYKFEVFIPQESSKILIKALNDRGLLRDGAYDYCYSKTSVKGHFRPLKGANPYIGEVG KIEELFEDKLEFRIREKDKELALKLIKENHPYEVPVINIIQLLDL >gi|281297900|gb|ADDO01000025.1| GENE 7 3982 - 5454 2200 490 aa, chain + ## HITS:1 COG:SPy0713 KEGG:ns NR:ns ## COG: SPy0713 COG4690 # Protein_GI_number: 15674771 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidase # Organism: Streptococcus pyogenes M1 GAS # 2 489 10 472 472 471 50.0 1e-132 MCTTILVGKNASYDGSTLVGRIEDSGSGMFKAKKFIVVSPEEQPVDYKSVRTDCQIKLPE KSMAYTCLPNVKKWRGVWGACGVNEKNVSMTATETITTNERVLGADPLIEYEEGVVKKGG IGEEDFVVITLPYIENARQGVERLGKLIEEYGTYESNGVAFQDVNDIWWFETIGGHHWIA KRVPDDVYVVMPNQFGIDDFDFDDAFDKKINYMCSDDLKEFIEENHLNRTLNGQFNPREA FGSDTYNDLLYNTPRAWAIYRYFNRNSYIWDGQDAEFLPTSNNLPWSMVPEKKITIEELK TAFSNHYELTPYDPYMIYGDKSQSGRFRPIGINRSDVLALTQIRPYVDEKISAIQWLAFG SNVFNAIAPFYANIKDTPQYLKNTTLKVSTENFYWVNRIIATMADAHFQETAADVEEYQS DIAAKGHYIIKKYDKKFKEIKGQNEDVEKLLEEANQEMADYLKERTDKYLDSILYTASMG MKNSFQRSDA >gi|281297900|gb|ADDO01000025.1| GENE 8 5892 - 6896 1100 334 aa, chain - ## HITS:1 COG:no KEGG:Dtox_1961 NR:ns ## KEGG: Dtox_1961 # Name: not_defined # Def: Ig domain-containing protein group 2 domain-containing protein # Organism: D.acetoxidans # Pathway: not_defined # 24 191 1635 1812 1821 96 30.0 2e-18 MNKKLISTITLSAILIAPTSILAKTFSDVNNNDWFYSVINELSDKGIISGYEDNTFKPQK SVSYAEFLTLLNNAIGEKQNPDYKNSEEWYNPTFDYLKNKGVIANIANPNKEISRNEMAK YLSRGLEKLKNQKPNTTAPTTIKDFNVIPAEYKDYVASVVNANLIRGDENHNFNGSKALS RAETAVIIKGLGGEVAPNKRDPKPLTQGTFPLPLEGKDRHGKPYKIQQSIVDFAPDNRNP YFKNDPELTEISKNQPIVNPEMLQEYGQKYLDIINNIITNPKYPRYGAYKNWAPSLIDRN TKSDLDGERLEEEQRKKGRIPLGEAIAKGMYLEP >gi|281297900|gb|ADDO01000025.1| GENE 9 7250 - 8608 1636 452 aa, chain - ## HITS:1 COG:lin0538 KEGG:ns NR:ns ## COG: lin0538 COG2848 # Protein_GI_number: 16799613 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 5 452 4 451 451 558 65.0 1e-159 MNNKDNILETINMLDNELLDIRTVTLGISLLDCIDPDINKSCKKIYEKINRIAYNLLNVT ERISQKYSIPIINNRISVSPISIIGAATSEKSYVPYAKILDKIAHNLGVDFIGGFSALVQ KGYTDSDLVLINSIPQAMAETSLVCSSVNIGSTKSGINMDACKKMGEIVKKTAELTKDSD SSGCAKLVIFANAVEDNPFMAGAFHGVGEKESTVNIGVSGPGTVLGALKKVKDKSFTDVS ETIKKTAFKITRMGELVGKEVAKELNIPFGIIDLSLAPTPAVGDSVGRILEEIGVEHVGG HGTTAALAMLNDAVKKGGIMASSHVGGLSGAFIPVSEDEGMIEASQNKYISFDKLEAMTC VCSVGLDMIAIPGSTPSETIAAIIADEAAIGVINGKTTAVRLIPVIGKDVGQSAEFGGLL GHAPIMDIGKSKSTNFSNRGGFIPSPIHSFKN >gi|281297900|gb|ADDO01000025.1| GENE 10 8621 - 8890 413 89 aa, chain - ## HITS:1 COG:MK1213 KEGG:ns NR:ns ## COG: MK1213 COG3830 # Protein_GI_number: 20094649 # Func_class: T Signal transduction mechanisms # Function: ACT domain-containing protein # Organism: Methanopyrus kandleri AV19 # 2 89 3 90 90 73 40.0 1e-13 MKAVITIIGKDKPGIVHESTGLLVKYNINIIDITQTILEDFFTMIMIVDISNLGDKFENL INDYDILSKKLSVKIKVMHEDIFNAMHKI >gi|281297900|gb|ADDO01000025.1| GENE 11 9797 - 11029 889 410 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282882249|ref|ZP_06290886.1| ## NR: gi|282882249|ref|ZP_06290886.1| hypothetical protein HMPREF0628_1583 [Peptoniphilus lacrimalis 315-B] hypothetical protein HMPREF0628_1583 [Peptoniphilus lacrimalis 315-B] # 1 410 1 410 410 622 100.0 1e-176 MKRKKKYIILSIIVLLASAYCYNSYKNNPKKIIAQAFYSLDDKILISIDNFFPNIGIKNM ADKISDSGNFTFSLLGNTENSNNDKINIIYTSDATKKGKYLYYKKVEDKNINEYSEKIIN SDIYISYPQILDKSFYIDKNTAESFSKNNNVSKDMGWDFSKEENFSYPKSFQDLKVDFKK YVAKEWVDFIKTTRVKRLDDNSFQLILNSRDSKSLFLKTFEYLKEKNSYIFDRYPNISIK FNRLMEKIEDNSIIILNVSIDENKEIKKIYTADNKYLLDFTNGFNFKFPTISLDFIRENY ENRNMIKGYYKGKFFRISYYPQNYKILAWNRIERFQIKFDSLEKNYYFTSKINVEGPYKY KDIKFNFYAFAKDIKADKDFIKILKIDDKDWQKLKMKFPKNFFKENLNLY >gi|281297900|gb|ADDO01000025.1| GENE 12 11061 - 12308 1140 415 aa, chain - ## HITS:1 COG:FN1469 KEGG:ns NR:ns ## COG: FN1469 COG0534 # Protein_GI_number: 19704801 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Fusobacterium nucleatum # 1 401 29 432 440 190 30.0 4e-48 MVDGFFVANYVGEIQFSAVNISMPLVTLLFALGILFSIGTQAIVGYELGKKEFDLANTVF STGLISLVIVGIIVSILLKIFLIPISTILGANNLTHNFILEYLGIILVFGVFFMVTYQLE VLVKVDGYPQLAVASVVVAAISNIFLDYLFIVPLKMGVFGAGLATGMSQIVSTVLMLSHF ILKKGRLRFSKKLDFSKLKKIIPLGFGDSISELSMGYTVFLFNNVLLRNFGQRGVIVYTV LSYISTFGQSTMSGISQGLAPLFAYDYGRAYYSYIKKSLKRGLIFVTSIAIILILICYFF SRDLSLIFLSDDVELLNLADKALKKYALAFLFLGANILMVTLFASLGKGRIATIISLLRT PINISMVMFLYEKFSGGDNIWYVLAISEFITLIVALALLNKFILIPLNIEINEDN Prediction of potential genes in microbial genomes Time: Mon Jul 18 12:16:56 2011 Seq name: gi|281297898|gb|ADDO01000026.1| Peptoniphilus lacrimalis 315-B contig00041, whole genome shotgun sequence Length of sequence - 369 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 265 144 ## gi|282882256|ref|ZP_06290892.1| ATP-dependent protease Predicted protein(s) >gi|281297898|gb|ADDO01000026.1| GENE 1 2 - 265 144 87 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282882256|ref|ZP_06290892.1| ## NR: gi|282882256|ref|ZP_06290892.1| ATP-dependent protease [Peptoniphilus lacrimalis 315-B] ATP-dependent protease [Peptoniphilus lacrimalis 315-B] # 1 87 1 87 87 140 100.0 4e-32 IQNILFAIREKNFDTLKTLLQEFKPEEFGEIYSKIKTAISTAIKHLEKIKNTLNTNYNNG KIEGINNKELKLLREFHMAICLLIILD Prediction of potential genes in microbial genomes Time: Mon Jul 18 12:17:04 2011 Seq name: gi|281297893|gb|ADDO01000027.1| Peptoniphilus lacrimalis 315-B contig00012, whole genome shotgun sequence Length of sequence - 6008 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 1, operones - 1 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 253 - 286 0.8 1 1 Op 1 . - CDS 313 - 1173 1173 ## bpr_I1923 DNA-damage-inducible protein 2 1 Op 2 . - CDS 1220 - 1897 538 ## NMB1132 hypothetical protein 3 1 Op 3 . - CDS 1943 - 5089 2591 ## COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases 4 1 Op 4 . - CDS 5105 - 5989 894 ## BCE_0423 hypothetical protein Predicted protein(s) >gi|281297893|gb|ADDO01000027.1| GENE 1 313 - 1173 1173 286 aa, chain - ## HITS:1 COG:no KEGG:bpr_I1923 NR:ns ## KEGG: bpr_I1923 # Name: not_defined # Def: DNA-damage-inducible protein # Organism: B.proteoclasticus # Pathway: not_defined # 1 286 1 286 286 462 84.0 1e-129 MPNLKAREYKKFEDIKYVRKDGSEYWSARELAAVLDYSQWRNFQKVIDRAMIACENSGHE VIYDFAEVSKIVEAGATSKSIKDYELTRYACYLIVQNGDPRKEVIALGQTYFAIQTYRQE IADHFNQLDEDRRRLVIRGDIKQWNQLLVETAHDAGVITNEEFAIFQNAGYMGLYGGLDV GDIHDRKGLTVRQKILDYMGSTELIANLFRISQTEEKLRKDKVEGAEAATKVHYSVGKEV RSAIEKIGGTMPEDLPVPEKSIQQIEKEQMKRLKEKAKKGKLMLDE >gi|281297893|gb|ADDO01000027.1| GENE 2 1220 - 1897 538 225 aa, chain - ## HITS:1 COG:no KEGG:NMB1132 NR:ns ## KEGG: NMB1132 # Name: not_defined # Def: hypothetical protein # Organism: N.meningitidis # Pathway: not_defined # 4 122 5 123 218 116 48.0 7e-25 MAKGIIYLMTTVVSGLIKIGKTGNEQFENRMRFLESNGYANITGLKREFAIEVDGYDEKE KLIHDIFSKSRIVGTELFALDIEVAKSLLSSLDGKQIYPKDKSKKEVFKESIEEIKLKTE GGFIPDGEYVLNRNIRGFGKVNGKAVVQDGVFTVLKGSFCGNTGKGYIPSIRRSAKIKDN ILQEDTVCMNPSSAGWIVIGKSNNGWMEWKDLKGNPIEIYRDKEK >gi|281297893|gb|ADDO01000027.1| GENE 3 1943 - 5089 2591 1048 aa, chain - ## HITS:1 COG:XF2739 KEGG:ns NR:ns ## COG: XF2739 COG0610 # Protein_GI_number: 15839328 # Func_class: V Defense mechanisms # Function: Type I site-specific restriction-modification system, R (restriction) subunit and related helicases # Organism: Xylella fastidiosa 9a5c # 6 1019 19 1054 1058 749 39.0 0 MPGLYTEADYENSVIELFRNDLGYEYVYGPDIERDFYSPLYEDVLVESLYRLNRGVPDDA IQEALYKLKNFENGELVQKNAIFMDYLQSGIPVRYFVDGEERSSIVYLVDYKNPDNNSFI VANQWTFIENSNKRPDVILFLNGLPVVLIELKSPSREETDASEAYRQLRNYMQEIPSIFI YNAICVMSDQLTSKAGTITSGEDRFMEWKTKDGNYENTQYAQFDTFFEGMFQKERLLDII KNFICFSNEGIDTFKILAGYHQYFAVRKAIESTKHATVTDGKGGVFWHTQGSGKSLSMVF YAHLLQEALNSPTIVVLTDRNDLDDQLYGQFAKCKDFLRQEPMHAESRENLKTLLAGRQA NGIIFTTMQKFEESDEPLSERNNIVVMADEAHRGQYGLAEKIKITKNEDGDEVAKRVIGT ARIIRNTLPNATYIGFTGTPISSKDRSTREVFGDYIDIYDMTQAVEDGATRPVYYESRVI KLNLDETTLKLIDAEYDLMALNADEEVIAKSKRELGQIEAVLGNDNTINSLVCDVLDHYE NNREKLLTGKAMIVAYSRPIAMKIYKRILELRPDWTEKVGVVMTSGNNDPEEWRQIIGNK RHKDELAKKFKDNDSPMKIAIVVDMWLTGFDVPSLATMYVYKPMSGHNLMQAIARVNRVF RDKEGGLVVDYVGIATALKQAMNDYTSRDKKNYGDTDVGKVAYPKFLEKLSVCRDKFHGY DYTKFINGTDLERAKTISGAVNFIISREKVDDKDSFVKEALMLHQALSLCSSLVDEDSRF EAAFFEAVRVLVLRLTNTGVGKKISLPEMNARINELLKQSIKSDGVINLFSDIKEEFSLF DPKFLQEVANMKEKNLAVELLKKLIAEQVSVYRRTNIVKSEKFSEIMQRSLNAYLNGMLT NEEVIEEMLKLAKQIAAAHQEGDRLGLTADELAFYDALTKPQAIKDFYENEELIAITKEL ADTLRKNKTIDWQKRESARAKMRMLIKKLLKKHKYPPEGMDDAVQTVMTQCELWTDNYNF GEDYKVYFNTNFTNENLSLVAEEKGKYN >gi|281297893|gb|ADDO01000027.1| GENE 4 5105 - 5989 894 294 aa, chain - ## HITS:1 COG:no KEGG:BCE_0423 NR:ns ## KEGG: BCE_0423 # Name: not_defined # Def: hypothetical protein # Organism: B.cereus_ATCC10987 # Pathway: not_defined # 26 290 22 302 304 68 25.0 3e-10 MNIDSNERIARSNIYSIFGKLLKRQIKNNNYGEIILKKAGLSSLVSTYKSKLEPYWFNRG YQNENNDYNPEYACIKICESLEGNEDNLLSFLNTILDETNTIEEDSKEKLINYLEIIGYE LEEELKDDYYDNLYAFKLIASVDGVKNRNKDISLMRNELNQYQSDLVGLYDEAISNFGNG QYVSCIENCRSLFENFFKRLDTQNSDYVRGILNATGELIIDSNGTELTSIKKIYTYWIDN KNGANRFRLFQTMYSVMSGLGTHHEDAASREDALLLLRYTEDCLLWCFRKGINS Prediction of potential genes in microbial genomes Time: Mon Jul 18 12:17:22 2011 Seq name: gi|281297883|gb|ADDO01000028.1| Peptoniphilus lacrimalis 315-B contig00015, whole genome shotgun sequence Length of sequence - 14119 bp Number of predicted genes - 9, with homology - 9 Number of transcription units - 2, operones - 1 average op.length - 8.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 74 - 1216 1370 ## CDR20291_0640 hypothetical protein 2 1 Op 2 . - CDS 1206 - 1973 437 ## Amet_1723 hypothetical protein 3 1 Op 3 . - CDS 1984 - 3693 1705 ## COG0018 Arginyl-tRNA synthetase 4 1 Op 4 2/0.000 - CDS 3703 - 6069 2109 ## COG1193 Mismatch repair ATPase (MutS family) 5 1 Op 5 . - CDS 6066 - 8393 2015 ## COG0826 Collagenase and related proteases 6 1 Op 6 . - CDS 8383 - 8931 515 ## gi|282882265|ref|ZP_06290899.1| cell division protein ZapA 7 1 Op 7 40/0.000 - CDS 8940 - 11321 2963 ## COG0072 Phenylalanyl-tRNA synthetase beta subunit 8 1 Op 8 . - CDS 11330 - 12352 1108 ## COG0016 Phenylalanyl-tRNA synthetase alpha subunit - Prom 12373 - 12432 9.0 9 2 Tu 1 . - CDS 12434 - 13975 1603 ## COG0405 Gamma-glutamyltransferase - Prom 14056 - 14115 7.9 Predicted protein(s) >gi|281297883|gb|ADDO01000028.1| GENE 1 74 - 1216 1370 380 aa, chain - ## HITS:1 COG:no KEGG:CDR20291_0640 NR:ns ## KEGG: CDR20291_0640 # Name: not_defined # Def: hypothetical protein # Organism: C.difficile_R20291 # Pathway: not_defined # 6 363 4 368 380 75 25.0 3e-12 MTIEEKLEKEINEKIERIGFIELKENIKIKDDIYLKKGIDYPLKFSYLKKGLRDKSFYAG IDLEKFIDSMIYLIGIKKDINNSQIYIKNIKDILKEPFEYIISKAYESLKNDSASAIIYL QAYENLYGFDKRILFSKYQVIEYYTDKNRDEFDYKELEQAESNIINNYLDMIEEDEKFAP PYLRLAYIYENRGHFIKAKLYFEKYLFYSKEESTKEEVRQELVKIEDYVSIEAAQTYIIY GDNFKALQALEKISLDYKDKMLLNLLKGKVNYALGKFEEAAKFLELSCLEKITDENASLL AMAYAQEGQINKAKKILEEAIQIEKESNILYYDLATINLNENKLEEALENFKKSYRLHSD ENIEKIIKKLEETIDKENKS >gi|281297883|gb|ADDO01000028.1| GENE 2 1206 - 1973 437 255 aa, chain - ## HITS:1 COG:no KEGG:Amet_1723 NR:ns ## KEGG: Amet_1723 # Name: not_defined # Def: hypothetical protein # Organism: A.metalliredigens # Pathway: not_defined # 1 252 1 250 250 70 23.0 1e-10 MSFFEDLTLVYNKAIKKTLKNIKNNPVILLGPIFYGALYQIAINIFSIFIAPTLGVLSGF LLPIVSSMILSSYFSMLSDVIYYNRISFNNFTRSFTDYFSSIYSVYFILIIISWITPMLG NLPVAHLFISVILVVLFNPIAEEIYIGGNTYTQAYSKCVEFLKENAFLWMLPFILYLLIT QVMGFSIAQGLMMSNVIDIPLGNFQMSPLMGTSNIKAIIALLLTGVYAIFRGNLFTILNN STRRKRAYMGEYYDD >gi|281297883|gb|ADDO01000028.1| GENE 3 1984 - 3693 1705 569 aa, chain - ## HITS:1 COG:SP2078 KEGG:ns NR:ns ## COG: SP2078 COG0018 # Protein_GI_number: 15901895 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Arginyl-tRNA synthetase # Organism: Streptococcus pneumoniae TIGR4 # 2 569 1 563 563 537 48.0 1e-152 MINFKEEIINILNENIEGLNKDEIERMVEIPPDYKMGDFAFPVFSLAKIYRKTPAIIAEE LAKKIESKYFAKIENKNAYLNFFIDKDILAEEVLKETIDKKENFGKSTIGRGKNVCVEYS STNIAKPFHIGHIRSTVIGDSIKRIYQFLGYNTIAINHLGDYGTQFGMLIYAYKKWGDKK KIEENPIDELLKLYVKVNTLAEEDKEVKEECRYWFKELENQNPEAVEIWKWFKEVSLKEF NRVYKMLDIEFDSYNGESFYSDKMPALIEDLRNRNILEESQGAEVINLDEYDLPPAIVVK SDGTTIYLTRDLAAAKYRHENYKPFRSIYVVGSQQSLHFKQLKATLKKAGFDWYDEIIHV AFGMVSLEDGTLSTRKGKVVYLEDVLNRAIEKVREILDQREEKTSRKIENKEELAEIVGI GAIKFQELFNQRIKDYVFNWDKTLSFEGESGPYVQYVYARISSLLEKGEFSLDKKFDFSL LQGQEEVDILRNLYNFTDVVIDAHNKFEPYIITRYIVELAKNFNKFYTQRPILVDDELTK NTRLLLCYSVKNVIRQGLDLLGIKAPEKM >gi|281297883|gb|ADDO01000028.1| GENE 4 3703 - 6069 2109 788 aa, chain - ## HITS:1 COG:CAC2340 KEGG:ns NR:ns ## COG: CAC2340 COG1193 # Protein_GI_number: 15895607 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Clostridium acetobutylicum # 4 788 3 788 788 568 44.0 1e-161 MTFKKAIRTLELNKILDKLKYFASANITKDYIDEIEISTDYEEINKRLKETSEAVSLIVK KGEPPLFAIISLRDVLRRASLGGILNPSNLIDISNFLRVSRLLKNYLKKDDKDENTENIS IIKDLIDNLYINRNLEDSINKKIISEDQVADDASRKLLSIRRNIVKLQGSLREKLEKILQ SQKDYLQDCIITMREGRYVIPVRNENKSKVKGLVHDISGSGQTVYIEPIEVVNANNEIKT LKIEEKEEVEKILKELSEEVAEVSTSIESNELILREIDFIFAKGKLSLDMGANLPKVNKN RYIDLKNAYHPLLNRKIAVPINIYIGKDFTSLIITGPNTGGKTVTLKTLGILQLMAQYGL HIPADEDSQVGIFNNLFADIGDEQSIEQNLSTFSSHMTNIVEILEKVDEDSLVLFDELGA GTDPTEGAALARSIMDFMLERKIRCISTTHYNQLKIYALTTEGVKNASMEFDINTLSPTY KLLIGLPGKSNAFEISKRLGLSQKIINHARDLISQENIEFEKVLASIEKDRTKTREFKEL AKRHKSDLEKQNARLEIELKKIENSKEKILKEAKDEARRILLSTKENVDLILDEISSLKA EISSDQARRIQESGDLLRNSIRKVDNDKKFVIEKAKKPIEDIKVGDQVRNSFGNISTVLE LPDSKGNIYIQSGIMKMKVPKESLTRIDPIDEVSKTKTRNIIKSKTMDVKSQIDLRGKNF EDSRDLVDKYLDDAFLAGLKTVNLIHGKGTGVLRKKLREYLKKQKNVKSYSDAPYNEGGD GVTRVILK >gi|281297883|gb|ADDO01000028.1| GENE 5 6066 - 8393 2015 775 aa, chain - ## HITS:1 COG:CAC2341 KEGG:ns NR:ns ## COG: CAC2341 COG0826 # Protein_GI_number: 15895608 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Collagenase and related proteases # Organism: Clostridium acetobutylicum # 3 774 2 786 787 380 34.0 1e-105 MKNNYEILAPAGNYETFIVAISAGADAVYLGGQKFSARAKASNFSVDEIEKALNYAHLRN KRVFVTVNILIADKEMDEAMDFVKSLYDIGVDALILQDIGFAMRIKKELKDFELHASTQM TINNYYGAKFLENLGFSRVVLARETPLYELELIKEKTNLEIEVFIHGALCVSYSGQCLMS SMIGGKSGNRGECRGACRKSYELISKNGKSLSQRQYFLSPKDLNSLDTVKNLIDLGAYSL KIEGRLKNPEYVYQIVSTYKKVLDGELNKNDREEVMQIFNRGFTKGINNKDFGKNFISID RPDNRGIEIGKVLEGKGNYYKVKFSRDIEVGDGLEFLGLKERFGQKSFKDFKKDKIYEIN INKKIKVPSVINRTFSIDLQKKLEKKINREDGFFLDLDLNMKIKKGEKAHLIGYCSGYTI DIYSKDFVEKSQNAPLSQEKIKDLLEKLGDTVFRIKNINIEMDEDSFLKTSQINQMRREL VSIFEKKLSAVDRNEREENLKKVPTYKKEDGKIFVEISSLSHLKLLNDENIKTILRYEDL AKIDLDKLNFKKVYIKLGKIYDSKELEQIRDNIKDKKIQGIFINNISQIEVLWDLGFSLH ADIGLNIFNLSDLNFLKEIGFSSAVLSPELNLSQIKEIRENTDFNLSLIVYGKIPVMTMH HCPYALVKGCLDDSNCKNCAYTNYYLRDEKNVDFELIRRGHISEILNSYPIFLDKEMDDL KKLNISPYIISDEFLEDVYSHYKLGYNKEKTEKLKIKIKEKTHSLTKGHFHRGIL >gi|281297883|gb|ADDO01000028.1| GENE 6 8383 - 8931 515 182 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282882265|ref|ZP_06290899.1| ## NR: gi|282882265|ref|ZP_06290899.1| cell division protein ZapA [Peptoniphilus lacrimalis 315-B] cell division protein [Peptoniphilus sp. oral taxon 836 str. F0141] cell division protein ZapA [Peptoniphilus lacrimalis 315-B] cell division protein [Peptoniphilus sp. oral taxon 836 str. F0141] # 1 182 1 182 182 187 100.0 2e-46 MSQKRVEVKIKDMKFYVVGGEDPSYIKNLATELNERITNIEKSNYKLNQLESTILTALNI LDELQKEKKSKAEMGKISQDKAQALEKVEEISKLKEEISKLRGVNKQSNDEILDLRKKFN KTNEELKEKSSDNFKKNDKIKILNEDISNLRKENNNLKNQNQQAQKKIIDLSRELESLYD EK >gi|281297883|gb|ADDO01000028.1| GENE 7 8940 - 11321 2963 793 aa, chain - ## HITS:1 COG:CAC2356_2 KEGG:ns NR:ns ## COG: CAC2356_2 COG0072 # Protein_GI_number: 15895623 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Phenylalanyl-tRNA synthetase beta subunit # Organism: Clostridium acetobutylicum # 144 792 3 654 654 548 44.0 1e-155 MYVPIKWLKDYIDLDEDIKTLADKLSDSGSHVESIITRSEGIEGVYTGKIIEIKKHPDAD KLVVCKVDFKDKDLQIVTGAKNVFEGAIVPVALDGAKLHNGIEIKSGLLRGVESQGMMCS LEELGYDVSVIPKEARNGIFIFPKNTEVGADVIELLDLNEPIIEFEITPNRPDCLSIIGM ALETAATLDKKIKRPSVEVKNAKGNIKDFLEDIQIDTPNCYRYYSRVLSDIKIEPSPLWM QDYLMAAGVRPISNIVDLTNFIMLELGTPMHAFDLDSLKNKKVVVREAIDGEKFKTLDGK ERDLKSGDILITDGEEIIGLGGIMGGLDSEINENTKNVLIEGACFNEDNIRKTSKRLNLR SEASGRFEKGLDPNLCEISVNRMCHLAQALNIGNVIDGHIDVYKNKVEEKVIELSKEKNN NLMGIELSTEEIASILQRLEIKCQINGDIISAKVPTFRRDINIAEDLIEEVARIYGYANI EKKPLRGELSVGSRPHYREIEIRIKNFLTGLGYNEFMTYSFVSPTIFDKLNIDKDDPIRD TLNILNPLGEDYSIMRPSLIPSMIDALSKNAARFNENVAGFEIGNTFFKSQKELPEEKLK LVMGFYDIGDFYYLKESIEKILWNVGLSGFTYKRIKKSYLHTGRCAEIFYKGHSLGILGE VHPLVLKNYSMKKKVYVAELDFDFITENSINNYTFKELFKYPSIKRDFAFVMDRDIEASQ IEKIAKDNGKDLLESFKVFDIYEGDNIEKGKKSLAFSLVFRSKDRTLTDDDISTISENVV KSIEKQLGAVLRS >gi|281297883|gb|ADDO01000028.1| GENE 8 11330 - 12352 1108 340 aa, chain - ## HITS:1 COG:CAC2357 KEGG:ns NR:ns ## COG: CAC2357 COG0016 # Protein_GI_number: 15895624 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Phenylalanyl-tRNA synthetase alpha subunit # Organism: Clostridium acetobutylicum # 1 340 1 339 339 393 53.0 1e-109 MREELFKIKEASLNNIKDAIDLKTIEEIKIKYLGKKGALTGLLKEMGKLSKEERPKMGAL ANEIRENIENSLKEKENIIKNALLEEKLKAERIDVTLETDNLILGHYHPLKRTIEDLEDL FIKMGFLVYDGPEIETVENNFDLLNTPANHPSRDMTDTFYFDDKKLLRTQTSPCQIRAMK EIGAPLRMICTGRVFRNDEVDATHSPMFHQMEGLVIDKNVTIANLMHSLDYFVKAFFGKD MKTRYRPHYFPFTEPSLEVDTTCPNCKGKGCPSCNHTGWSMELLGCGMVHPNVLRNCGID PEIYSGFAFGMGIDRIAMVRYGIKDIRMMFENNTKFLEQF >gi|281297883|gb|ADDO01000028.1| GENE 9 12434 - 13975 1603 513 aa, chain - ## HITS:1 COG:BH0867 KEGG:ns NR:ns ## COG: BH0867 COG0405 # Protein_GI_number: 15613430 # Func_class: E Amino acid transport and metabolism # Function: Gamma-glutamyltransferase # Organism: Bacillus halodurans # 1 513 25 539 539 488 48.0 1e-137 MVATSNPSAALAGIEILRKGGNAIEAALAAAISMPVVEPTCNGLGADLFAIISYKNKLYG INGSGRSPKKISIQALREKSYEDMPFFGVDSVNTPGAVGAWFEIYNKFGKLPLKEIFEPA INYAKNGYALSPKVAKLWDDEVNKYKNLKDICGLEEFFKVFSDKGKAPKAGDIVKNDNLK NTLEEILETEGKSFYSGDLARKISSSVKDLGGFLDIDDLKAYKPLWVDPISTNYKGYDIW EMPPNGHGVSVLMALNILNKLTLTDREDPKTLHKIIEAIKIAMTDGKTYISDPSFMKKRV DELLSDEYAEKRKKLIGICAKNYKNILPISPSTVYMATADSDGNMVSLIQSNYNGFGSGI VVPTTGIALNNRLANFSFDSNSVNALSGGKLPYHTIIPGFISKDNKSIGPFGIMGGFMQP QAHVQVLTNMIDFNLNPQAALDAPRFMWTGDKNVEMEMDYGNYMINTLKEFGHNMIIRSD YTDMGRGQIILRLENGSYVGATEKRTDGYIGIY Prediction of potential genes in microbial genomes Time: Mon Jul 18 12:17:44 2011 Seq name: gi|281297881|gb|ADDO01000029.1| Peptoniphilus lacrimalis 315-B contig00081, whole genome shotgun sequence Length of sequence - 389 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 309 176 ## COG3666 Transposase and inactivated derivatives - Prom 329 - 388 3.0 Predicted protein(s) >gi|281297881|gb|ADDO01000029.1| GENE 1 3 - 309 176 102 aa, chain - ## HITS:1 COG:CAC0657 KEGG:ns NR:ns ## COG: CAC0657 COG3666 # Protein_GI_number: 15893945 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Clostridium acetobutylicum # 12 102 10 100 334 77 46.0 6e-15 MKTIKNTSSLTNYTLVNDTIQLRLNFNTEIYIKDDVKLRLVKNIIERMNLSELKKVYSSF GRKPTVNPVTMLQIIIFCYSEGIFSSREIEKSCKYDLRIKYL Prediction of potential genes in microbial genomes Time: Mon Jul 18 12:17:48 2011 Seq name: gi|281297868|gb|ADDO01000030.1| Peptoniphilus lacrimalis 315-B contig00060, whole genome shotgun sequence Length of sequence - 11116 bp Number of predicted genes - 12, with homology - 12 Number of transcription units - 3, operones - 3 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 47 - 325 126 ## gi|282882281|ref|ZP_06290913.1| NukH 2 1 Op 2 . - CDS 322 - 1509 1306 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase 3 1 Op 3 3/0.000 - CDS 1524 - 2480 905 ## COG1484 DNA replication protein 4 1 Op 4 . - CDS 2480 - 3472 969 ## COG3935 Putative primosome component and related proteins 5 1 Op 5 . - CDS 3462 - 4046 227 ## PROTEIN SUPPORTED gi|228003785|ref|ZP_04050771.1| acetyltransferase, ribosomal protein N-acetylase - Prom 4115 - 4174 16.0 + Prom 4101 - 4160 15.0 6 2 Op 1 . + CDS 4242 - 4715 498 ## COG1522 Transcriptional regulators + Term 4726 - 4752 -1.0 + Prom 4717 - 4776 6.3 7 2 Op 2 8/0.000 + CDS 4808 - 5509 1092 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 8 2 Op 3 . + CDS 5509 - 7326 1739 ## COG5002 Signal transduction histidine kinase + Prom 7331 - 7390 6.2 9 3 Op 1 . + CDS 7412 - 8653 949 ## Amet_4755 hypothetical protein 10 3 Op 2 . + CDS 8658 - 9506 678 ## Clos_2780 hypothetical protein 11 3 Op 3 1/0.000 + CDS 9555 - 10340 752 ## COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I 12 3 Op 4 . + CDS 10349 - 11098 665 ## COG0496 Predicted acid phosphatase Predicted protein(s) >gi|281297868|gb|ADDO01000030.1| GENE 1 47 - 325 126 92 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282882281|ref|ZP_06290913.1| ## NR: gi|282882281|ref|ZP_06290913.1| NukH [Peptoniphilus lacrimalis 315-B] NukH [Peptoniphilus lacrimalis 315-B] # 1 92 1 92 92 128 100.0 2e-28 MNKEKLKNLLEKLTLFLTFLIVVVTWIGRIKKTNIGYVPSSIRNLQIILVLFTMAEILLL TYLDKKKNALYLSIFYIIMALVYIAFKGAGRI >gi|281297868|gb|ADDO01000030.1| GENE 2 322 - 1509 1306 395 aa, chain - ## HITS:1 COG:CAC1001 KEGG:ns NR:ns ## COG: CAC1001 COG0436 # Protein_GI_number: 15894288 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Clostridium acetobutylicum # 1 394 1 394 395 369 47.0 1e-102 MKISNRVQKIQFSAIRKLTPYAQEAKKNGKKVYHLNIGAPDVEVPQAFFDAIGDFQGKVL KYPSAPGIDELRESWSDYYKKRNLNFEPENIFITSGASEALLLVLMTIADEGDEIITTNP FYSNYKTYMDQLNLKINAFNTSPDNGFALPSTEEIEKVISDKSVAFLISNPTNPTGAVYS REELERLKELAIKHDMYIITDEVYREFIYDGLKYLSFAELEGIDDRLILLDSISKRFGAC GARIGAIAAKNKDILTSINKLATGRLAVPTLEQIGAAALFNSDESYFEEVNKEYEKRRNT IYEELKKIDGVSVYKPKGAFYIMPTLPVDDAEDFAKWLLTDFDVDGETLMMAPADGFFYN SNEGKNKVRLAFVLNVNDIKKAMNILKEGLRKYNS >gi|281297868|gb|ADDO01000030.1| GENE 3 1524 - 2480 905 318 aa, chain - ## HITS:1 COG:CAC3588 KEGG:ns NR:ns ## COG: CAC3588 COG1484 # Protein_GI_number: 15896822 # Func_class: L Replication, recombination and repair # Function: DNA replication protein # Organism: Clostridium acetobutylicum # 4 316 8 319 329 185 37.0 1e-46 MEVNRKISLHYENIRRKNEEILKNRKKEIYRNIPQIAEIDKYINQLGLKSCKSLFLKPSS SLVMDVTREISDLKKEKERLLTENGYDINYLSMPYDCEYCKDSGLLEDGSKCYCLNKLII DKLYKTSNLDHTLKKENFLHFDTNIFSDKIDEKEGISPKENILKIREISKRFIETFKEDN DFNLLFYGPTGQGKTFTINCIAKELLDRNISVIYLTAYEIVELLENKRFKKIDDDRYDYL FEAQLLIVDDLGIELVSSFTNSEIFNIINTRLIRGKKTVISTNLSPKELSETYTDRVFSR VFQKFMPLKFFGEDLRWQ >gi|281297868|gb|ADDO01000030.1| GENE 4 2480 - 3472 969 330 aa, chain - ## HITS:1 COG:CAC3587 KEGG:ns NR:ns ## COG: CAC3587 COG3935 # Protein_GI_number: 15896821 # Func_class: L Replication, recombination and repair # Function: Putative primosome component and related proteins # Organism: Clostridium acetobutylicum # 15 315 14 318 328 114 29.0 2e-25 MEFKLEKNKYDLGETPISNIFFNDFMPLANGDFVKVYLLAYKLCLKGDKEKTNNEFLADM LGMLESDIVRAWNYWQKQGIVKISEEGDIEFVNLKELYIRDVYNLKSQEKTSKYSDIVQD PKIANLLAKAEFLMRENIPSVKKMDIASWIDVYNEPAEVIEEAFYYATEVQDVYDLKYIE KIVRNWSKDGIRTVEDVENSYINRDQKYYRFNKVRKFIGIERKKFNLVEFNIVNSWFDDM GFDMDMVTEACKRTANISKPNINYVNKILKSWKEKDIKSPEEIPVKDKIQKNKVKTKFHN FKQITDAYSEDELEEIARKKREESYKRLGI >gi|281297868|gb|ADDO01000030.1| GENE 5 3462 - 4046 227 194 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|228003785|ref|ZP_04050771.1| acetyltransferase, ribosomal protein N-acetylase [Anaerococcus prevotii DSM 20548] # 7 190 4 181 184 92 28 2e-18 MLVGKYVSLRELILKDVYTFKNWSKHSSYLLLDYNFNEVEEKNIKDWFIWKTHSPFSKYY VILKDSYPIGYISFKNISYFLKSACLGIALNPTYINKGYGGDAIKTMLKYFFDELKFKKI SLKVASYNKRALHLYEKIGFKKRWTILMSFPNGDFDINIKDFYNNKECFKKVFGKTFFYA YQMDIRREDFINGI >gi|281297868|gb|ADDO01000030.1| GENE 6 4242 - 4715 498 157 aa, chain + ## HITS:1 COG:SSO2347 KEGG:ns NR:ns ## COG: SSO2347 COG1522 # Protein_GI_number: 15899103 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Sulfolobus solfataricus # 2 142 8 144 153 91 36.0 5e-19 MLDDIDLKILELLSENGRMSHEEISKHLNLTRPAIHRRIYKMEEAKLIKGYKVIIDWEEI GYNVDTFVLVRVNTSSFPQLIKDIKNIKDHSFKIFECYRVTGEHCIMLRVKTITTSDLRR FYDKVLELDGVLDTKTLLILKSEEFDNKVFYEDNKDA >gi|281297868|gb|ADDO01000030.1| GENE 7 4808 - 5509 1092 233 aa, chain + ## HITS:1 COG:BH4027 KEGG:ns NR:ns ## COG: BH4027 COG0745 # Protein_GI_number: 15616589 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Bacillus halodurans # 4 228 5 228 236 236 57.0 3e-62 MDIKILVVDDEQAIADIIKFNFEREGYGVDIAKDGLEALNFVKDNTYSLILLDIMMPKLN GFDTLKEIRKSHKTPVIMLTAREDEVDKVLGLELGADDYVVKPFSIRELIARVKAVLRRF GPPTEEEGSEDEIITVGELEIDINKYEVKKNGKIIDLTLREFELLKFLSSNPGVVFSREE LLEKVWEYEYYGDIRTVDVTIRRLREKVEDTSKDYKYILTKRGVGYYFDGEVK >gi|281297868|gb|ADDO01000030.1| GENE 8 5509 - 7326 1739 605 aa, chain + ## HITS:1 COG:BS_yycG KEGG:ns NR:ns ## COG: BS_yycG COG5002 # Protein_GI_number: 16081092 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Bacillus subtilis # 6 597 7 599 611 299 33.0 1e-80 MLKNTFQSIKFRFVLIYFVLVLICMSIVGSFIIQRLEVIQREKVEENMKKTISSISTAVS ATIKGGEDNYIFLDKNLKNWGLTSSQNVYILSSGDNPKVISTSLNSDENLMGKSAYSLAF LESSLLTDASKGREEERIVLNKSQNLYSKHIASPILSNEGNVIAIVYMTENLNSIYELIG EAKIIISYATVISLLITSILGYFIANSITTPIRDVTRKAREMAKGNFDQRVDVKSNDEIG QLGNMFNYLTDELKNTIAKNDLERSKLNTIFNYMAEGVIAVDRTNKLIHANSIAKNLLSL DDSRINTQINLKKIGLKDINYDIEKSLQGEVLAEIKNHFYKLKYAPYKSDLKENEGLIIV LSDINKEHRLDVLRKEFVANVSHELKTPITTIGSYTETLLNGVAGEDINHFLKVIERENA RMARLVSDLLVLSNIDYKKEHLNKESFDCYEFIEEAVESQSLLISQKSHNISIDVPIKIR TIYSDRHGASQILINIISNALKYTKEGGKILIAAENYKNGKNNFVKISVKDNGIGIPKED LPMIFERFYRVEKGRSREMGGTGLGLSIANEMIKSLGGSIKISSTLNVGTNVELFFPAGD YYEFK >gi|281297868|gb|ADDO01000030.1| GENE 9 7412 - 8653 949 413 aa, chain + ## HITS:1 COG:no KEGG:Amet_4755 NR:ns ## KEGG: Amet_4755 # Name: not_defined # Def: hypothetical protein # Organism: A.metalliredigens # Pathway: not_defined # 21 410 57 481 487 65 20.0 6e-09 MPNKVEDLVFKSEDASMDVFMPSMLVVNLGYREHYVLRNFKDYWKLYSSDISEILENASS ENLIMIDEKTYLNLQNKKSLVFKFSSPISASILINLIGENKKDNNINLSINSIYISDDND VYLCASNNFYKLLGLKTNLKMNRLIDNAKNLGTRYINFFERYGIYKDTLIPDSDFIKTQK IYYNIATDALTDDIRNNLAVRYLQTDLDYIKEIKQSEKTSYVYENKYISFNKNGIVEYSN EEEFNVTDRNLYTSIITALEFLSRNSGMTSNVYLDSTKPIEYKGSLGYKFFFNLRESGKN LVLNSKDNSFIEMDVFSNHVKFYREYYFKRADDPSYNELRVKVLDIKTIIDRNLKIFPQE KTEDILNLLNNLSIVYINESTTDSSKLKLAYELSINGKKYYFDISLGKLILIR >gi|281297868|gb|ADDO01000030.1| GENE 10 8658 - 9506 678 282 aa, chain + ## HITS:1 COG:no KEGG:Clos_2780 NR:ns ## KEGG: Clos_2780 # Name: not_defined # Def: hypothetical protein # Organism: A.oremlandii # Pathway: not_defined # 1 282 1 297 299 84 27.0 6e-15 MDWKKSKTILIIALIITNLILSIILLVSYSNTKDLSLSKYSIANTKDILANFEIEIDCKI PKKHPRLSSLLVEFESYDEQSLNRRFFDSLGIITHPSTDRIEINYNNEHINLFNYRRIFY ENSAKVKIYDVDSLKKAQKICENFMLNNNYNIDDMELSYSYFDEGKYYLNYSKIFEKNSL ESSYTNFVIDNRGVVSMDRLWLNVLKKSKAKFRLSSAPRALLALIDKEESYGKIVKRIVP CYYFNPEDQGYIEDITKALQGRAIPAWKIEFSDGDNIVIDTF >gi|281297868|gb|ADDO01000030.1| GENE 11 9555 - 10340 752 261 aa, chain + ## HITS:1 COG:lin0319 KEGG:ns NR:ns ## COG: lin0319 COG1235 # Protein_GI_number: 16799396 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily I # Organism: Listeria innocua # 1 239 15 254 276 183 39.0 3e-46 MRYISIASGSSGNCQFVEYKNTRILIDAGLSGKKIENNLKSRGIDPSTIDAILVTHEHRD HVTSVGVLSRRYNIKVFSNIETAQAMTPVVKKINSENIYIFENNRAFNFKDLKIKAFDTF HDCQKGCGFVIIGNKKISLLTDTGWVNSNAFESMKGSSLYYLESNHDVDMLINGRYTWAS KKRIMSTKGHLSNENCAEVLEKLLSKNQEIVVLGHLSNENNNPEIAAKTNEQYLNSKYII RDVDYTLDVAPRYEAGKVYDL >gi|281297868|gb|ADDO01000030.1| GENE 12 10349 - 11098 665 249 aa, chain + ## HITS:1 COG:alr4846 KEGG:ns NR:ns ## COG: alr4846 COG0496 # Protein_GI_number: 17232338 # Func_class: R General function prediction only # Function: Predicted acid phosphatase # Organism: Nostoc sp. PCC 7120 # 1 246 1 259 265 142 34.0 6e-34 MNILVTNDDGIMAEGIRTLAKVLIDKGHQVTIAAPNVENSGKSHAITFKTPLVVQNIELD SLKGVKAYSVFGTPADCVRAAVHLCDKKFDYCFSGINSGYNAATNVLYSGTVSSAIEANL FNIKSVAVSASYVKGQVNYQSAAKIAMELFDKIKDENILQVYNLNVPFLNYDEIKGIKVA KVGKDVMSIYDISSEGNEYNLKLKGFPKEFNGDKDSDIYYLNQGYATVSPLYYDTTNKTS IDHLKEILD Prediction of potential genes in microbial genomes Time: Mon Jul 18 12:18:15 2011 Seq name: gi|281297837|gb|ADDO01000031.1| Peptoniphilus lacrimalis 315-B contig00056, whole genome shotgun sequence Length of sequence - 32716 bp Number of predicted genes - 30, with homology - 30 Number of transcription units - 9, operones - 6 average op.length - 4.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 5 - 64 8.2 1 1 Op 1 25/0.000 + CDS 96 - 1049 1080 ## COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin 2 1 Op 2 42/0.000 + CDS 1058 - 1780 247 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 3 1 Op 3 10/0.000 + CDS 1773 - 2654 875 ## COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components 4 1 Op 4 . + CDS 2651 - 3763 834 ## COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components + Term 3843 - 3875 4.2 + Prom 3765 - 3824 8.7 5 2 Op 1 . + CDS 3953 - 6028 2350 ## COG3968 Uncharacterized protein related to glutamine synthetase 6 2 Op 2 . + CDS 6037 - 7644 1742 ## COG0504 CTP synthase (UTP-ammonia lyase) + Term 7659 - 7692 3.1 + Prom 7809 - 7868 10.7 7 3 Op 1 20/0.000 + CDS 7896 - 9062 1593 ## COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component + Term 9071 - 9099 0.6 8 3 Op 2 24/0.000 + CDS 9104 - 9991 1067 ## COG0559 Branched-chain amino acid ABC-type transport system, permease components 9 3 Op 3 19/0.000 + CDS 9994 - 10989 863 ## COG4177 ABC-type branched-chain amino acid transport system, permease component 10 3 Op 4 18/0.000 + CDS 10982 - 11755 204 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 11 3 Op 5 . + CDS 11748 - 12443 232 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 + Term 12450 - 12489 1.4 12 4 Tu 1 . - CDS 12632 - 13594 1428 ## COG0039 Malate/lactate dehydrogenases - Prom 13661 - 13720 10.5 + Prom 13615 - 13674 7.7 13 5 Op 1 2/0.000 + CDS 13721 - 14245 210 ## PROTEIN SUPPORTED gi|229255399|ref|ZP_04379326.1| acetyltransferase, ribosomal protein N-acetylase + Prom 14247 - 14306 10.6 14 5 Op 2 . + CDS 14326 - 14829 530 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 15 5 Op 3 8/0.000 + CDS 14859 - 16262 1720 ## COG0215 Cysteinyl-tRNA synthetase 16 5 Op 4 1/0.333 + CDS 16247 - 16660 197 ## PROTEIN SUPPORTED gi|163764762|ref|ZP_02171816.1| ribosomal protein S13 17 5 Op 5 1/0.333 + CDS 16657 - 17424 719 ## COG1351 Predicted alternative thymidylate synthase 18 5 Op 6 6/0.000 + CDS 17421 - 18125 879 ## COG0566 rRNA methylases 19 5 Op 7 . + CDS 18125 - 18652 541 ## COG3688 Predicted RNA-binding protein containing a PIN domain 20 5 Op 8 . + CDS 18663 - 20021 1362 ## COG2239 Mg/Co/Ni transporter MgtE (contains CBS domain) + Term 20027 - 20055 1.3 - Term 20015 - 20043 1.3 21 6 Tu 1 . - CDS 20054 - 20296 354 ## COG0695 Glutaredoxin and related proteins - Prom 20409 - 20468 5.4 + Prom 20365 - 20424 7.6 22 7 Op 1 . + CDS 20444 - 20806 341 ## gi|282882306|ref|ZP_06290937.1| hypothetical protein HMPREF0628_1557 23 7 Op 2 3/0.000 + CDS 20799 - 21572 675 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) 24 7 Op 3 6/0.000 + CDS 21576 - 23108 1352 ## COG0770 UDP-N-acetylmuramyl pentapeptide synthase 25 7 Op 4 . + CDS 23113 - 24285 1345 ## COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes 26 7 Op 5 10/0.000 + CDS 24282 - 26396 1590 ## PROTEIN SUPPORTED gi|15894003|ref|NP_347352.1| fused ribonuclease/ribosomal protein S1 27 7 Op 6 . + CDS 26377 - 26838 464 ## COG0691 tmRNA-binding protein + Term 26866 - 26899 2.4 + Prom 26927 - 26986 10.7 28 8 Op 1 36/0.000 + CDS 27010 - 27711 297 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 29 8 Op 2 . + CDS 27719 - 31744 3924 ## COG0577 ABC-type antimicrobial peptide transport system, permease component + Term 31757 - 31803 10.3 + Prom 31794 - 31853 12.3 30 9 Tu 1 . + CDS 31883 - 32710 847 ## COG0708 Exonuclease III Predicted protein(s) >gi|281297837|gb|ADDO01000031.1| GENE 1 96 - 1049 1080 317 aa, chain + ## HITS:1 COG:FN0668 KEGG:ns NR:ns ## COG: FN0668 COG0803 # Protein_GI_number: 19704003 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface adhesin # Organism: Fusobacterium nucleatum # 1 317 5 312 312 220 41.0 3e-57 MKKLLLLFVLLIGLTACGQSKDNTNKSNTSDSQKTEVAESKKMVTTTTSFLYDMTKVLAG DYVDVDMVIPAGEDPHLYIPKTKDVEKITNADLVLFHGLHFEGKMVDILEKNGVDLSANF PKDKIGQMDEGGKTIVDPHFWFDISLYKLACENAAKALDELVPEHKEDIDKNLQNYLKKL DDLDAYNKKRLGEIKESSRYLITPHDAFNYFSRAYNIKVVAPQGVSTDSEVANKDIESTA NFIVEHKVPAIFAESTTDPARMEKLKEMCKSKGFDVKVVCGDGNELFSDSLAPSGQDGDN YIDMYKHNVDLIVDNLK >gi|281297837|gb|ADDO01000031.1| GENE 2 1058 - 1780 247 240 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 1 234 1 232 311 99 30 2e-20 MKDTVISVKNLTIAYNDKPVLWDNNINFVKNSITAIVGPNGAGKSTLLKGILGLKKILSG KIEIEGKNLKDVKKEIAYIPQSSSVNWDFPTTVFDVVLMGRYVHCGWIKRPNKSDKKKAL DAIEKIGLSQYRDRQISQLSGGQKQRVFIARAIASDANIYFMDEPLAGVDKKTEGIIMEF LRDSQKMGKTSIVVHHDLNTIKKYFDHLVIINKRIIAQGLVNNVFTSENIEMAFGGEFLV >gi|281297837|gb|ADDO01000031.1| GENE 3 1773 - 2654 875 293 aa, chain + ## HITS:1 COG:BS_ytgC KEGG:ns NR:ns ## COG: BS_ytgC COG1108 # Protein_GI_number: 16080127 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Mn2+/Zn2+ transport systems, permease components # Organism: Bacillus subtilis # 15 284 17 283 435 179 40.0 7e-45 MFKYEVISSYAFLVVALGTLFLSIAAASLGTITVLKGQSLIGDAIGHSSFPGLVLAFILF ERREPLILLLGAIFSGSIAFILIQIVNKNTKISLDTILAVVLSTFFGMGMVLKSYIQGNP NFLKASQSGLQNYIFGQAAYMLMADVKLISIISLLSLLLIGIFYKEIKLFVFDEVYAQSI GINCKIIYGIIMLCSMSVIGAGLKLVGAILISSLLIVPAITALQWSNNFFKVMVIASFVG GFSAITGTYISTVYSGMSTGPTIIVTMTILAFLSLIFGPKGYLATYRKRSKYK >gi|281297837|gb|ADDO01000031.1| GENE 4 2651 - 3763 834 370 aa, chain + ## HITS:1 COG:TP0166 KEGG:ns NR:ns ## COG: TP0166 COG1108 # Protein_GI_number: 15639159 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Mn2+/Zn2+ transport systems, permease components # Organism: Treponema pallidum # 15 343 15 344 367 201 39.0 3e-51 MNKMIFLILFMTSLSCSLIGVFLIFRNLSMVTDAISHSVLLGIVLAYFVCGDISSNFLII GAAIFGLLTVFAIETLSSTGLVKNDDAVGIIFPLFFSLAVILISKYARNVHIDTDVVLMG EVILAPLNTVNILSIEVPKALISSSLILLINLTFITVFYKELKLTTFDPDFSTISGFSSL MLFYSLMALSSLTAVVSFDSVGAILVISFFIVPGATAFLLTTKLKNLLILSALFSLISSY LGFIFGYAFNVSMAGMTATVSGILFFLVLLFNKRGLITEIFLRRKNKQLVKIHLLLIYIG DSAQEEDAQNKLGFATINTYLNWDNKTLEKVLEYLTKKSYIDRDCKKKMYNLNTKGVEKY RELLRDYNLC >gi|281297837|gb|ADDO01000031.1| GENE 5 3953 - 6028 2350 691 aa, chain + ## HITS:1 COG:CAC2658 KEGG:ns NR:ns ## COG: CAC2658 COG3968 # Protein_GI_number: 15895916 # Func_class: R General function prediction only # Function: Uncharacterized protein related to glutamine synthetase # Organism: Clostridium acetobutylicum # 7 687 8 693 696 566 46.0 1e-161 MKTTENFGVKVFNKEKMKEKLPYPIYLKWKDAQRVEKDLDKESADAIAHAMKDWAIANGA THFAHWFQPLNGHTAKKYVAFLDRTVDGDPIERFSGKELIKGEPDASSFPSGGMRSTFEA RGYTYWDLTANSFIIGNVLYIPTIFMSYYGEKLDKRGPLLDSCNILSDVGRDIVNLFSDT HAYRMRVKVGLEQEFFLVDKKLYDKRSDLINIGRTLVGAPSPKGQEFEDRYFGQIPKRVE EFYKDVDKRLWELGIYSKTEHNENAPLQFELASIFENANVAIDDNLLCMNILKEEALKHG MVCLLHEKPFDGVNGSGKHNNYSITTNYGLNCFEPGEDPYNNNVFLLFTAAIIKVCHKYQ TLLRLCSSSPSNDYRLGGLEAPPAIISVFLGSDLEDLFNAIRDDEEYSNDSKSKFRAYSL KDIPLDTSDRNRTSAMSFTGNKFEFRMLGSSKNASDINICLNTAMAEVLGEMKDILMPYK DDKINLRKKVLEIVKDVMKKHGDIVYSGDNYSKEWKEEAIKRGLKNHKNYLEALLDAKNL DLKKIFIDSNIFTSNELRALYEISCKEIINYNLLEVKTLLSMLTKDICQSLQSELRDIEE ILKFTENKELKKIYDTINNCLSDLYNKYFDLKLSYEHAVKIENLEDKAKFTQNDLHEKVL DIREVSDKVEVLISRKNLNLPTYEDMFNSLD >gi|281297837|gb|ADDO01000031.1| GENE 6 6037 - 7644 1742 535 aa, chain + ## HITS:1 COG:BS_ctrA KEGG:ns NR:ns ## COG: BS_ctrA COG0504 # Protein_GI_number: 16080768 # Func_class: F Nucleotide transport and metabolism # Function: CTP synthase (UTP-ammonia lyase) # Organism: Bacillus subtilis # 1 532 1 534 535 658 59.0 0 MTKYIFVTGGVVSGIGKGISAASIGRLLKDRGLSVFMQKFDPYLNIDPGTMSPYQHGEVF VTYDGAETDLDLGHYERFIDEELTKEASITTGKIYSKVIARERRGDYNGATVQVIPHITD AIKNSVYKAAKESKADVVITEIGGTVGDIESLPFLEAIRQIHSENKIEDVLFVHTVLVPN IPGSDELKTKPTQHSFKELMSNGIKTDVIIIRSNGVITESIKEKISLFCDVPMEAIVQSE NAELIYEVPIVFHRQGLDEYILNKLDLKNQKKSEYKWSKMVERFKKAKEELNIALVGKYV SLHDAYLSVTQALFDAGYENGYKVKIKWIDSEDVEKDTSILQGVNGIIVPGGFGQRGTEG MILTSKFARENKIPYFGICYGLQIALIDIARNKLGLKGASSTEINPETPYPIIDLLENQK SVENLGGTLRLGNFPCSLEENTLARKLYGKEKIEERHRHRYEFNNDFRGLVRKAGVEFSG INEDLDLVEIIECKDHPFFLACQFHPEFKSRPTKIHPLFNGFIRASIENKKQINQ >gi|281297837|gb|ADDO01000031.1| GENE 7 7896 - 9062 1593 388 aa, chain + ## HITS:1 COG:FN1432 KEGG:ns NR:ns ## COG: FN1432 COG0683 # Protein_GI_number: 19704764 # Func_class: E Amino acid transport and metabolism # Function: ABC-type branched-chain amino acid transport systems, periplasmic component # Organism: Fusobacterium nucleatum # 1 387 1 381 383 370 51.0 1e-102 MKKKILFALLAFMLVLTACGTTDNVNEASKGEQGKDSSDEIILRSMGPKTGAVAIYGKTT ENGIKLAIDEINEAGGINGKKINYATGDDKGDSTEAMNLYSRYVEEGADGIIGAVTSKPS LAIAENSQEDNMPIITPTGTMNSITEGKPNVFRVCFTDPGQGVILANFASNNLKVKSAAV LRNTSSDYSNGVADAFIKQAKEKGIQVVADEGYGATDKDFKVQLTNIKSKNPEVILVPDY YENDVVIAKQVADLGINAKILGPDGWDGVLSTVAQGDDKILENCYFTNHYYVDDQKEVVK NFVTNYRKKYNEDPSAFSALGYDAVYVYKNAFENAKSLKHEDVIEALKNATIDGVTGSLK FDENNNPIKTSAILTIKNGQYVLDSFVE >gi|281297837|gb|ADDO01000031.1| GENE 8 9104 - 9991 1067 295 aa, chain + ## HITS:1 COG:FN1431 KEGG:ns NR:ns ## COG: FN1431 COG0559 # Protein_GI_number: 19704763 # Func_class: E Amino acid transport and metabolism # Function: Branched-chain amino acid ABC-type transport system, permease components # Organism: Fusobacterium nucleatum # 1 295 14 308 308 319 66.0 4e-87 MGFILQIINGLSLGSIYALVALGYTMVYGIALLINFAHGEIIMIGAYTVVFSTTLCLAKI GAPLWLSIIPAVILCTILGLFIERVAYRPLRNSPRISNLITAIGVSLFLQNIVMLFFGAG AMSTQSLFKTQIVKLGSLEIPFISLITIVITAILTVALQYFMTKTKMGKALIATSEDSKA AELVGINVDNAMVLTFGIGSALAGVAAVLYMGTYAQAQPLMGSMLGIKAFTAAVIGGIGL VPGAVIGGLLLGIVEALTRAYLSSKLADAIVFSILIIVLLIKPTGLLGKNVKEKV >gi|281297837|gb|ADDO01000031.1| GENE 9 9994 - 10989 863 331 aa, chain + ## HITS:1 COG:FN1430 KEGG:ns NR:ns ## COG: FN1430 COG4177 # Protein_GI_number: 19704762 # Func_class: E Amino acid transport and metabolism # Function: ABC-type branched-chain amino acid transport system, permease component # Organism: Fusobacterium nucleatum # 42 326 1 285 285 328 69.0 7e-90 MNRKNILTYILAFLLLIGLYGIILFLNRQGIVNRYSLTVLRMVAINIILATSLNITVGNL GQITLGHAGFMSIGAYSAALFAKSAIVPGMAGYILSLFFGGFVAFIFGIIIGLPALRLKG DYLAIVTLAFGEIIRVLIEYFNFTGGAQGLSGIPMMKSFDIIYVIMIICVTLMYSVMTSR HGRAVLSIREDEIASEASGINVTFYKTFAFSLSAFFAGLAGAIYAQNIGVIDAKIFDYNK SFDILVMVVLGGMGSFTGSIISATVLTIIPEILRSFASYRMVIYSLVLIVMMMFRPVGLL GRKEFSLHKVFDIITSSDKRKFLRAKGDEHE >gi|281297837|gb|ADDO01000031.1| GENE 10 10982 - 11755 204 257 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 1 242 1 225 311 83 25 2e-15 MNKVLECKDVGIEFGGLKAVNKFNLTIEKGELLGLIGPNGAGKTTVFNMITGVYNPTEGE IFLNGSKISGLGVYKIVKMGIARTFQNIRLFQKMTVLENVKVASNRQMSYGVFTGMFRLP KYWKEENEINEKAIEMLKIFDLDRYWSLPAESLSYGQQRKLEIARAMATKPSLLLLDEPA AGMNPKETEELMETINLIRDKFNITILLIEHDMKLVLGICQRLMVLNYGQILHQGDPKEV INNPKVVEAYLGGVRGA >gi|281297837|gb|ADDO01000031.1| GENE 11 11748 - 12443 232 231 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 222 1 230 245 94 25 1e-18 MLNVNKLDVYYGNIHAIKEINFHVEEGETICLVGANGAGKTTTLQSISGLIPKSGKLEFM GKNISKLKANQITALGIAQVPEGRRVFTGLSVYDNLHLGSFLIKEDNTKILNRIYQMFPI LEERKNQLAGTLSGGEQQMLAMGRALMSRPKLLLLDEPSMGLSPLYVEKIFKVIEMLREE KITMLLVEQNANLALEVSDRAYVLETGKIVKEGSAKELKNDPTIKTAYLGE >gi|281297837|gb|ADDO01000031.1| GENE 12 12632 - 13594 1428 320 aa, chain - ## HITS:1 COG:lin0242 KEGG:ns NR:ns ## COG: lin0242 COG0039 # Protein_GI_number: 16799319 # Func_class: C Energy production and conversion # Function: Malate/lactate dehydrogenases # Organism: Listeria innocua # 8 317 6 312 313 347 53.0 1e-95 MIKNPNFKVILVGDGSVGSSFAFAMTLKGLGRELGIIDINKKKTIGDAMDLNPVLTYNST KLIYSADYSDCKDADLVVITSGAPQKPGETRLQLVDKNLKIIKDVVDNIMKSGFDGLFLV AANPVDILSYAVKEFSGFPRERVISSGTSLDSARFCDEISRFVGVDRRDITAYIMGEHGD SSFPCWSNANIAGKKATEWIAEKTDDLEAAKEKIYTNVRDVAYRIIENKGATYYGVATVL ARICRHIIEDSHSIITVGACLEGEYGLSGVYMGTPCVIGRNGIEKIIEVELDEKEKELME KSFKALKEVQDKGMAKVREN >gi|281297837|gb|ADDO01000031.1| GENE 13 13721 - 14245 210 174 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229255399|ref|ZP_04379326.1| acetyltransferase, ribosomal protein N-acetylase [Capnocytophaga ochracea DSM 7271] # 1 158 1 157 175 85 33 4e-16 MEKLYCQRLILRLPIPDDAYDLYEYGKDDQVTKFLTWDSYKSVKDAEEILKIFSVQDEKV PRFAIYHKEDKKVIGIIEGRIRQTNSKDRCAELGYVLNKNYWSKGYMTEACKEFIKYLFE KKNIHRIEAMADVRNIASQKVMEKCLMTYEGTLRELFFRKGQYVSFKIYSILQA >gi|281297837|gb|ADDO01000031.1| GENE 14 14326 - 14829 530 167 aa, chain + ## HITS:1 COG:lin0387 KEGG:ns NR:ns ## COG: lin0387 COG0494 # Protein_GI_number: 16799464 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Listeria innocua # 1 160 1 160 169 94 33.0 1e-19 MEYWDLYNKKGKLKHKVIKKGMPMRKGQYHLISEGWIYRSDKKFIIQRRSLEKSSFPGMW YCSAGGSCISGETSKEGMKREFFEELGIDIPIEEIRLKRIVTGKNFIFHIFLVRKDIDLE DLTLQKEEVMDVALATEEEIFQMIDKKIFISLSYYKDFFDKIKNNRL >gi|281297837|gb|ADDO01000031.1| GENE 15 14859 - 16262 1720 467 aa, chain + ## HITS:1 COG:CAC3177 KEGG:ns NR:ns ## COG: CAC3177 COG0215 # Protein_GI_number: 15896425 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Cysteinyl-tRNA synthetase # Organism: Clostridium acetobutylicum # 1 465 1 460 464 478 50.0 1e-134 MKLFNSLTGKKEEFYPINSGKVTMYNCGPTVYNYIHVGNARPIVVFDTLRRYFLYKGLDV KFVLNFTDIDDKIINRANEENKTTEQIAEKYIEEFKKDASALGLYDYQTINPRATHVVDQ MISFIQTLIDKGAAYVSSGDVYFDVNYDKEYGKLSGKKIEDLRAGSRVDVSDLKRNPYDF ALWKNKKENEPYWKAPWGEGRPGWHIECSVMAKTLLGDTIDIHTGGEDLKFPHHENEIAQ SETCNDAPFARFWLHNGMITVNNEKMSKSKGNFFTVREVSKEYDLEILRFFLLTTSYRAP INFSREVMNQTKNALERLYNAKYKLEKDIELSKERDLTEDEKKIEEKFQAHRQSFEKAME DDLNTADAITAIFDLVKDINVNLDENSAKKLLEEGMSLLKTLTKILGIMEREKNCDDLDE EILNLIKEREDARKNKDFKRADEIRDELLEKGIEIKDTRKGIEWKRL >gi|281297837|gb|ADDO01000031.1| GENE 16 16247 - 16660 197 137 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764762|ref|ZP_02171816.1| ribosomal protein S13 [Bacillus selenitireducens MLS10] # 21 131 11 124 141 80 37 1e-14 MEKTLKDFLAFGKIYDEKSIKELNSLALAYVGDAVFELLVRTMVLKGNIPAHKLHTKSIK YVQAKGQKELIEKVLQSLSEEELGVYNRGKNSKPHTVAKNQTLGDYMEATGLEALFGYLY LLDRLDRVVEIFGEMIN >gi|281297837|gb|ADDO01000031.1| GENE 17 16657 - 17424 719 255 aa, chain + ## HITS:1 COG:PAB0861 KEGG:ns NR:ns ## COG: PAB0861 COG1351 # Protein_GI_number: 14521502 # Func_class: F Nucleotide transport and metabolism # Function: Predicted alternative thymidylate synthase # Organism: Pyrococcus abyssi # 1 255 2 242 244 163 40.0 3e-40 MKVKIIAHTEFPEETIAKSAKLCYSRVGVDEISEKLDEDSTNKFLNMLMGFSHMSPLEHA SFTFAVEGVSRTLTHQLVRHRIASYSQQSQRYVRLNHFEYIVPPQIEKNPKAKEIFIRTM EEDQKAYDDLVEILIEENSKEYIEMGLDKDKARKKVEKQSIEDARYVFPNACETKIVFTM NVRTLLHFLSLRCCNRAQWEIRQMATEMLRQLKEISPILFKDAGPGCVYGPCPEGKMTCG KAKEVREFFKNLGEK >gi|281297837|gb|ADDO01000031.1| GENE 18 17421 - 18125 879 234 aa, chain + ## HITS:1 COG:SP1457 KEGG:ns NR:ns ## COG: SP1457 COG0566 # Protein_GI_number: 15901307 # Func_class: J Translation, ribosomal structure and biogenesis # Function: rRNA methylases # Organism: Streptococcus pneumoniae TIGR4 # 4 234 7 239 242 186 45.0 3e-47 MSYIYGRGPVIEALKNNKVDKIYLASHEGSIIKIKAMAKEKKVLISSLSKDRLDKMAPGK NHQGVVALVSGYEYKDFQELLDENKDKKEFRLLILDKMEDPHNLGAIARSALFFNFDGII IPKHREALVNDTVYKTSQGAVDNVNICQVTNLSQTIEKLKKAGFWIYAALLEGDNIKDVD FSGKVAIIIGNEGKGISDNLIKASDFKVKIPNLSEFDSLNASVAAGIIMYEVIR >gi|281297837|gb|ADDO01000031.1| GENE 19 18125 - 18652 541 175 aa, chain + ## HITS:1 COG:BH0114 KEGG:ns NR:ns ## COG: BH0114 COG3688 # Protein_GI_number: 15612677 # Func_class: R General function prediction only # Function: Predicted RNA-binding protein containing a PIN domain # Organism: Bacillus halodurans # 10 155 2 148 170 95 41.0 5e-20 MYRIRYEKDKNYLFVDAYNMINFWPDLVKLKDINLEDSRICFIDKMIEFSHFTKEKIILV FDAYLVKGSGGKIYKKDGIVIVFTKENERADHYIERELDMIGRLRNVRVATSDATIQEII LSRGGTRISARELLAEVENSKKVTKNLQKKLKEKNLSSFDKNDIKKLKDLKNNLK >gi|281297837|gb|ADDO01000031.1| GENE 20 18663 - 20021 1362 452 aa, chain + ## HITS:1 COG:FN1480 KEGG:ns NR:ns ## COG: FN1480 COG2239 # Protein_GI_number: 19704812 # Func_class: P Inorganic ion transport and metabolism # Function: Mg/Co/Ni transporter MgtE (contains CBS domain) # Organism: Fusobacterium nucleatum # 11 452 8 449 449 383 45.0 1e-106 MNYQEYAEYREKFVEMVDEKRLTELKNILADLNVVDTAEIIEDMEDTYLLICFRMLAKEK GAEVFSFMEPYDQKRIINKINNSELEEILDELDFDDMIDILEEMPANVVTKVLQKSTPEE RTEINKFLMYDKNSAGSIMTIEYVSLKRDWTVAEALDHIKEFGKDKEIIYTCYVESEYKQ LLGFVSLRTLVVADKDALINDIMETDLVYFSTSDDKEEVAQAFTRYGYIAIPVVDREHRL CGIITFDDVMDIVEDEATEDIHKMAAINPSEDEYLDQTPWQLAKNRIPWLLILMISATLT SGIITKYNFILSQFLILSSFIPMITDTGGNSGSQSSTVVIRAIATGEIGLRDGVAVIFKE FRVGVICGVVLSAVNFLRLLIFTQADIKISFLVSLTILCTVILSKLMGAILPLFAERINL DPAIMASALITTIIDSVVLVIYFGLASIILGI >gi|281297837|gb|ADDO01000031.1| GENE 21 20054 - 20296 354 80 aa, chain - ## HITS:1 COG:PA1741 KEGG:ns NR:ns ## COG: PA1741 COG0695 # Protein_GI_number: 15596938 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutaredoxin and related proteins # Organism: Pseudomonas aeruginosa # 1 78 40 120 123 59 39.0 1e-09 MENLRLFVGTTCPFCKKVEDYIEKNNISGVELINIDKDKEARNYLIEKGGKKQVPCLFIG EEALYESLDIISYLKDKFNK >gi|281297837|gb|ADDO01000031.1| GENE 22 20444 - 20806 341 120 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282882306|ref|ZP_06290937.1| ## NR: gi|282882306|ref|ZP_06290937.1| hypothetical protein HMPREF0628_1557 [Peptoniphilus lacrimalis 315-B] hypothetical protein HMPREF0628_1557 [Peptoniphilus lacrimalis 315-B] # 1 120 1 120 120 170 100.0 4e-41 MSFLDNFQTNLDEIRNNLNIITKRLSQNTREIRDIAKIKLEIIKEKKNLNSLYKELGTHH YKLYKNLETTLNEDNQIVKIDISLARIKSLEDSIKSQGKDSIDSGTSGLYIMDNKKDNDE >gi|281297837|gb|ADDO01000031.1| GENE 23 20799 - 21572 675 257 aa, chain + ## HITS:1 COG:Cj0796c KEGG:ns NR:ns ## COG: Cj0796c COG0596 # Protein_GI_number: 15792134 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Campylobacter jejuni # 29 241 29 226 239 108 34.0 1e-23 MNNIKKSFVKIKNIDTAYIKRQGGEKVALVLHGWGANIESVMPIINSIPPSYTVYAYDGP GFGDSENPDYVYGTYDYYEFLKEFCRQFDIKKASFIGHSFGGKTLTILGSRDKDLVEKLI LIDASGIIPKRKLSYYVKVYTFKTLKKLYLLTHKNDKNALEKFYKNHGSDDYQNSQGIMR KVFVKVVNESTLKELSAIKAQTLLLWGDKDDATPLYMGKIFEKEIENSGLVVLNGGHFSY IDDFGTFRAVINSFLGE >gi|281297837|gb|ADDO01000031.1| GENE 24 21576 - 23108 1352 510 aa, chain + ## HITS:1 COG:jhp0677 KEGG:ns NR:ns ## COG: jhp0677 COG0770 # Protein_GI_number: 15611744 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide synthase # Organism: Helicobacter pylori J99 # 114 505 127 491 493 166 32.0 1e-40 MIIFYLCEFIIICIGLYFSYYRSNYPIHMLQLEGYDNKEYKNWIRENKDHVSKFLYSKNY KSKTPLVWTDRAKRLLKTHKLVNFICFLIVAIITDIIYENTKSYLSLIGLIIFSLLIYYF QYVLLLISNAIRKPKEEKINLGFYLQAQEKIKTLKKESGLKVLGITGSFGKTSVKFISDT ILKEKYRTKNTPSSFNTPMGLSKVINNELDKNHEVFIAELGAKQKGEIDEVAKLVSPDIG IITAVGPTHMHLFKTIENIQNTKYELIEDLPEDGIAIFNYDNDYVKPLADKTKKKTYRYG IKDIEKLDVYAKDIRVNEKGSTFTLGIKGLGEISCSSVLLGIHNISNLLAGASAAYVLGF NLEQIKNGIEKVKAVEHRLNIVPSPAGYVVIDDAFNSNPVGFRAALSVIDEFKEGKKIII TPGMVELGAIEEEENYKIGIEIAKVCDYVILVGQKISAPIKRALIDNNFNEDRIFTVKSL NDGTSKLVEIAKAGDVVLFENDLPDNYNEE >gi|281297837|gb|ADDO01000031.1| GENE 25 23113 - 24285 1345 390 aa, chain + ## HITS:1 COG:BS_ddlA KEGG:ns NR:ns ## COG: BS_ddlA COG1181 # Protein_GI_number: 16077523 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanine-D-alanine ligase and related ATP-grasp enzymes # Organism: Bacillus subtilis # 7 369 1 348 354 221 38.0 3e-57 MFNVAVVFGGISVEHEVSVITGLQVIENLDKEQFNPIPIYISKEGRFYSGEMLKDFKTYK EGKYREATEVFIIPQKGDRFLYSTKVVGGIFKKTHTENYIYARIDAIFPALHGTFGEDGA IQGLFEYMNIPYVGCGVLAGACGMDKVIMKDIFKANNIPVVDYTYFYRSELKDLQSVLKK CEKLGYPLIVKPANLGSSIGISKVKDTLELTKALEVASNYDKKIIVEKCLTDHREINVAV LGDQDDLKVSACEEPITAEDILTYGDKYVGSSKTKMASQENQKKKLPADLSKEVHNKICQ LAKESFKAIDATGVSRIDFLLKNDEVYVNEINTLPGSIAFYLFEVEGLSFKDLLTKLLEI AIKRFKEKEENVYSYDSNLFNKTSYGAKIK >gi|281297837|gb|ADDO01000031.1| GENE 26 24282 - 26396 1590 704 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15894003|ref|NP_347352.1| fused ribonuclease/ribosomal protein S1 [Clostridium acetobutylicum ATCC 824] # 2 704 3 711 730 617 45 1e-176 MIKEKILEVIKNSKPQTKEDLAKVFNIKKRDRENFYFLLENLQRQGLVFEDKKAKLIFVD NKTYFFGKIQTSKKGFGFLITENLDEDIYISEENLNFALNGDDVIVKKYKDSSGSKPEGK VVFIVERVNQKVVGIFQATKNFGFVVADDAKFATDIYIPKKRMNGAKNGQKVLVKIDKWP SPGKKPEGRVLEILGYPDEPHVDILSVAKSLDIPMEFSKTVKREAKSLETSVQAEEIKSR LDLRDKLTFTIDGADSKDFDDAVSLEILENGNYLLGVHIADVAHYVKEDSPIDEEAFLRG NSVYLLNKVIPMLPFELSNGICSLNEGVDRLTLSCIMEVDKKGQVINKKICESVINSKKR LVYDYVSDYLEDGVSDDSLIGLEETLKNMYELSKILQEKRREMGSIDFEVPEALIKVTED GWPTEILRRERRSANKLIEDFMLLANTTVAEYFFKFEIPFLYRIHEKPREEKIQELNSYL RPLGYMANFGSEIKSRDIQKLLKKVQGKKEELFISTMALRAMAKARYSPKNDIHFGLCFQ YYTHFTSPIRRYADLTVHRIIKDFLRGDLSKNKVKKLNDDLQGISEHISATERVAQEAER QVESIKMAEYMSDRIGKKYNGIISGITNFGIFVELENLIEGLVSYKTMKGFYEFDPVNYR AVDVDTKNSFGIGDLVTIKVVNVNLTLGKIDFELESDDNEKEEG >gi|281297837|gb|ADDO01000031.1| GENE 27 26377 - 26838 464 153 aa, chain + ## HITS:1 COG:CAC0716 KEGG:ns NR:ns ## COG: CAC0716 COG0691 # Protein_GI_number: 15894004 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: tmRNA-binding protein # Organism: Clostridium acetobutylicum # 1 147 1 147 155 152 55.0 3e-37 MKKKKADANNLSQNKKARHEYFIEDIYEAGIELKGTEVKSIRNGSANIKDAFCQIKNGEM FIYNMHVAPYEEGNIYNVDPLRTRKLLLHKREIRKLEKIKNLQGYSIIPLRLYLSKGRVK AEIATAKGKKLYDKRADMAKKEVQKRLREKIDY >gi|281297837|gb|ADDO01000031.1| GENE 28 27010 - 27711 297 233 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 5 198 3 200 223 119 38 3e-26 MAFIEVINMSKVYKAGETSIVANDSLTFHIEKNEFAIILGPSGAGKSTFLNILGGMDKPT DGEIIVDGKEISKYTDRELTTYRRNVMAFVFQFYNLIPNLTALENVELATQIVKNAKDPL EVLKSVGLENRINNFPSQLSGGEQQRVSIARAISKNPKLLLCDEPTGALDYKTGKQILTL LQDLTRNTDTTVVVITHNSAIAPCADRVIEITDAKVKNISINKEPKKISQIEW >gi|281297837|gb|ADDO01000031.1| GENE 29 27719 - 31744 3924 1341 aa, chain + ## HITS:1 COG:lin1187 KEGG:ns NR:ns ## COG: lin1187 COG0577 # Protein_GI_number: 16800256 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Listeria innocua # 360 1341 223 1136 1136 429 32.0 1e-119 MKASKKDNLKEIKNTFSRFISILLIVGLGVFVLIGLICTGPIMRKTLDKAINKSNYQDIY VSAPSGLEDEDMKIIENQVGLDELEYAYDIDLSIKGRTEVIKVMNMPFKINMPDIIEGKP PRKGQILLDKRLKELSYKIGDKISFATEVNKMDENEGQSKLKNYSYEVSGFCNSLDYIMN RTRGYSQRGLGEIQGFAYVDAGEFKDKPTIARLIYKDSKKYDTSDKEYKNLISSKYQSLK IDMRYRPSDRLEKIKGNISDDIKNGEGKIADARMQLINAKDKLERGRNDLKKGQDQYEKG LKEFQSQKKEGQDKLTDSKDKLSKAKGDLNKADKDLKEGKTKLDNGKKDLNNAKSQIDEN REKLQDGYRKYENGKGQLKAGEEALSEGEKQLADGRKKLDDGWKKIEESKIKLQEGRKKY EQGLQEYTEGKRKLEESKGKIVETFNKMGISNVNYDQAQSLIITMSSALDRLSPLIDQSK GIDEQISQSQKNIENYQNQKNKIEADIESLNKKIADENDAQKKQELSNKLQSLINEENQI NSDLAKENLKLQTLKKTKEEIDKNFAELDKILPGIGNIGDINSIKEKLSQAKDGVAKIQT GEKTLIEAKAKLDSSKTQLEEGEKQLQEGISEAEAGEAEYAKNEEKIKDNRKKIQVGKEE LIKAKKDLDEGESKLKKGEKDYDEGLKKYDENYNKYVEGKAKYESGKKEYDEGQKAFVEG QKTFDKEIQEGQNKLNDAKYKLYKGKKDLAKGQSEFNDKSKDAEEKISKAENDIDKGKRY LNIIKEPRYSISPRYQIVDVNTYIDFSKRIDGLSLIFPIFFFAIALLVSFTTMTRMVEEE RIIIGTYKALGYTDKEISEKYFIYGALASIIGGSIGAISGSYILTYVIGNAYSSDSIFEG NLIIRPYPLKILFAIIVGFIFTALAAIFTANNSLRENTASLLRQKPPKIGNRILLERFPF IWKRMSFLFKVTARNLFHSKKRMFMTVIGIMGCTALLVLGFGIKGSVADIEDLQFSQIIK YDLAISYDRDIDEDDFKNYKEFINNSSLDRGKFYQEQFTVEYPKMDQSLNLIVPSDIDDF SKFFSIRNPKTRKAINLDGRGAVISQKLSKLLHIKKGDILKIRDAYDNEFEVEVKDICEM YITHYIFMNKDYYEKIKGEKFTTNTDFIKNINDKEMKNLKNKVINYKVVTSVVGADIFRK ALNQFLYSIEKVEGIIVMMSSLLAIVVLYNLTNINIEERRREIATIKVLGFYAKETTAYV YRETFILTFLGIVIGLIVGKLLHYFILQIVVPYYVMLSEHLVVVSYIYAGLITLFITIFI MIIFHFKIKKIDMVESLKSNE >gi|281297837|gb|ADDO01000031.1| GENE 30 31883 - 32710 847 275 aa, chain + ## HITS:1 COG:SP1845 KEGG:ns NR:ns ## COG: SP1845 COG0708 # Protein_GI_number: 15901674 # Func_class: L Replication, recombination and repair # Function: Exonuclease III # Organism: Streptococcus pneumoniae TIGR4 # 1 275 1 275 275 369 65.0 1e-102 MKFISWNIDSLNAALTSSSNRAILTRAVLSSIRDEDPDLFAVQETKLPPTGLSKKHKEIL EKEFQDYSYVYVTSKEEARKSYAGTMIFYKKDLECKATYPEIGAPGSMDMEGRIVTLEFK DFYFSTVYTPNAGDGLKRLSDRQVWDKKYLEYCQELDKNKPLVLCGDFNVAHKEIDLANP NNNHFSAGFTDEERTGFTNLLEGGFVDTFRLINGDVEGKYTWWAQRIKTSKINNSGWRID YFLVSQRIKDRVKKSHMMDSGQRQDHTPIILEIDL Prediction of potential genes in microbial genomes Time: Mon Jul 18 12:18:27 2011 Seq name: gi|281297825|gb|ADDO01000032.1| Peptoniphilus lacrimalis 315-B contig00073, whole genome shotgun sequence Length of sequence - 9912 bp Number of predicted genes - 12, with homology - 11 Number of transcription units - 6, operones - 3 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 20 - 196 181 ## gi|282882320|ref|ZP_06290950.1| conserved hypothetical protein 2 2 Tu 1 . + CDS 635 - 739 158 ## + Prom 911 - 970 9.2 3 3 Op 1 1/0.000 + CDS 997 - 1608 573 ## COG0500 SAM-dependent methyltransferases + Prom 1659 - 1718 2.8 4 3 Op 2 . + CDS 1738 - 1986 313 ## COG0073 EMAP domain + Term 2000 - 2048 7.4 + Prom 2030 - 2089 10.1 5 4 Tu 1 . + CDS 2163 - 2351 211 ## gi|282882329|ref|ZP_06290959.1| hypothetical protein HMPREF0628_1638 6 5 Op 1 . - CDS 2452 - 3369 1032 ## STH2256 hypothetical protein 7 5 Op 2 . - CDS 3379 - 3885 635 ## gi|282882328|ref|ZP_06290958.1| ferlin, putative - Prom 3928 - 3987 7.5 + Prom 3748 - 3807 6.3 8 6 Op 1 . + CDS 4018 - 5355 1301 ## COG0617 tRNA nucleotidyltransferase/poly(A) polymerase 9 6 Op 2 . + CDS 5348 - 6691 1696 ## COG1109 Phosphomannomutase 10 6 Op 3 . + CDS 6700 - 7536 1004 ## COG1307 Uncharacterized protein conserved in bacteria 11 6 Op 4 . + CDS 7545 - 8681 1026 ## Apre_0196 hypothetical protein 12 6 Op 5 . + CDS 8665 - 9786 1546 ## COG3853 Uncharacterized protein involved in tellurite resistance + Term 9829 - 9870 6.6 Predicted protein(s) >gi|281297825|gb|ADDO01000032.1| GENE 1 20 - 196 181 58 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282882320|ref|ZP_06290950.1| ## NR: gi|282882320|ref|ZP_06290950.1| conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] # 1 58 1 58 58 63 100.0 4e-09 MKKLDQIRQESKEIKDKINDTKERLRQLKNQEKKILKQDIVKRRKERTHRLITRRPIL >gi|281297825|gb|ADDO01000032.1| GENE 2 635 - 739 158 34 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MAYSFHFSVNIISRGKGKSAVASAAYISGEKNKK >gi|281297825|gb|ADDO01000032.1| GENE 3 997 - 1608 573 203 aa, chain + ## HITS:1 COG:CAC0567 KEGG:ns NR:ns ## COG: CAC0567 COG0500 # Protein_GI_number: 15893857 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Clostridium acetobutylicum # 18 184 19 189 209 127 42.0 1e-29 MLKKFFENVKNPKNNFGGRFMVKGMNIGHEKLAKWGRSFLNIKSSDVVLDLGCGGGRNVQ YFLTKAKKVYGMDYSKTSVEIASSVNSEAIRDGRCKIIEADVAKLPFEDESINIVTAFET IYFWKNIEVPFREIHRVLVKNGQFLICNEGAYREHKNIKKWADMLDFEVYSPKYLTETLT KIGFKCEYHLNEKEHIVFLARKL >gi|281297825|gb|ADDO01000032.1| GENE 4 1738 - 1986 313 82 aa, chain + ## HITS:1 COG:SPy0422_2 KEGG:ns NR:ns ## COG: SPy0422_2 COG0073 # Protein_GI_number: 15674551 # Func_class: R General function prediction only # Function: EMAP domain # Organism: Streptococcus pyogenes M1 GAS # 1 81 43 121 122 64 46.0 4e-11 MKFTLDDGSGKDRIILSGIKNFYNAEELVGKTLLAITNLPPRQMMGLESCGMLLSAVCEY EGEELLNLIMLDSKIPAGAKIY >gi|281297825|gb|ADDO01000032.1| GENE 5 2163 - 2351 211 62 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282882329|ref|ZP_06290959.1| ## NR: gi|282882329|ref|ZP_06290959.1| hypothetical protein HMPREF0628_1638 [Peptoniphilus lacrimalis 315-B] hypothetical protein HMPREF0628_1638 [Peptoniphilus lacrimalis 315-B] # 1 62 1 62 62 100 100.0 4e-20 MKYKAIYWFILSPFIKSYLNIHFSKSQTKEFTKKAKSFYKDLLAKGDDICDFWILGNKAK KE >gi|281297825|gb|ADDO01000032.1| GENE 6 2452 - 3369 1032 305 aa, chain - ## HITS:1 COG:no KEGG:STH2256 NR:ns ## KEGG: STH2256 # Name: not_defined # Def: hypothetical protein # Organism: S.thermophilum # Pathway: not_defined # 28 154 30 156 382 108 40.0 2e-22 MKKIITLVLASLLLISTTVFAKAPSIEIDGKIIKTDAAPFIEKDRTFVPIRFIGEALNYK VDWNKDKKLVTIKNNDRQILMTIGDTNITVNNEKIKNDVAPLIRKDRTYVPLRFVAENMN LKVNWDGKEKKVIINSQKDNITDGITGLSGDEKEFLNKFQSKQKIIEDNMTSLKKSFFEK ASTLSKEDLEKEYNRANKEISDAISELKNINVSDKFRDTYNKAMEANERVLTMLPDLKEA IINKDEDVAKKVVNLFTDFQIKMTELQDAYNANLKGENYKAREDIKAYTDNADKTIENLM KQIGK >gi|281297825|gb|ADDO01000032.1| GENE 7 3379 - 3885 635 168 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282882328|ref|ZP_06290958.1| ## NR: gi|282882328|ref|ZP_06290958.1| ferlin, putative [Peptoniphilus lacrimalis 315-B] putative lipoprotein [Peptoniphilus sp. oral taxon 836 str. F0141] ferlin, putative [Peptoniphilus lacrimalis 315-B] putative lipoprotein [Peptoniphilus sp. oral taxon 836 str. F0141] # 1 168 1 168 168 253 100.0 3e-66 MKGKLLISVLALSLFLSACGKKNESKDSNVKIGSSTNKVVVNSNASSNKESEDSKESANT PITSAFDKEFVDNLIENSNYISRVRIQNSSTNGLESNFLTDYVGDLSNVEIELPKSLIPN KEYIIFYKDGDNGKIEPTRGNDSFIEIKDENDSNLIYLNEKFVTTGSN >gi|281297825|gb|ADDO01000032.1| GENE 8 4018 - 5355 1301 445 aa, chain + ## HITS:1 COG:FN0243 KEGG:ns NR:ns ## COG: FN0243 COG0617 # Protein_GI_number: 19703588 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA nucleotidyltransferase/poly(A) polymerase # Organism: Fusobacterium nucleatum # 8 438 16 449 451 280 39.0 3e-75 MDKDVFDLLEKLDNHGYKSYIVGGCLRDILLGIRPNDFDITTNARPSQVKEVFREYKIFH YGIKYGTITVEYRDRLYEITTFRSEGTYSDNRRPDRVLFLDSIDDDLARRDFTINAMAMD KSYNIYDPFNGIRDLKNKIIRACGDANKRIEEDALRILRAIRFATRFKFYLDEELFDAIS LNRNLLKNIARERIFSEICKIITYDNPSYGFLLMEETGILDILFPSLRKTVGFDQKTPWH DRNLFDHLLCVMDNVPNDLAIRFAAIFHDIAKPLTLKIDGDGTGHFLGHDALGATMAEDI LKYYKAPKALIEKVSILIKEHMKVQEVMTDKALRRQIKRVGRENILDLYELLYADCVCTR YDRDGSFILNRKKRIEELLDEKEMKKEKFLEINGYDLIELGFHGKIIGQILKYAENLVLS DTSLNKKEILLEKIKNNFISGDRNG >gi|281297825|gb|ADDO01000032.1| GENE 9 5348 - 6691 1696 447 aa, chain + ## HITS:1 COG:CAC0484 KEGG:ns NR:ns ## COG: CAC0484 COG1109 # Protein_GI_number: 15893775 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Clostridium acetobutylicum # 1 447 1 448 448 430 51.0 1e-120 MGKLFGTDGVRGIANKFLSPDLCFELGRSAGFVLSKEKKGKVIVGRDTRYSGDLIESSLV AGLLSIGFDVDIAGVIPTPGIAYLTKTYDYLLGVEISASHNPYEYNGIKFFSSQGFKLPD EVENEIESIILDDIKLYKDLTGDKIGRINRSDKFVSIYKNYLKNLVKMDLKGKKIALDIG NGALYDIAKEVLESYGAEVIVINDKPNGKNINDNCGSTNPNLIKELVIKEKALMGMSFDG DADRIIAVDEKGSIVDGDHILAICASYLKEKNKLKNNACVGTIMSNMGLEKYLKSIGVNF VATKVGDRYIIEEMRKSDYIVGAEQSGHVIFLEHNTTGDGLATGINLLNIMEDTGKKLST LNELMTSYPQVLENAKVPDELKRKVLEVPEIKEKIDKIEEKYKGNGRIVIRPSGTEPLVR VMIEGEDIVSIGKDAIELKNFIEEKLN >gi|281297825|gb|ADDO01000032.1| GENE 10 6700 - 7536 1004 278 aa, chain + ## HITS:1 COG:SPy1698 KEGG:ns NR:ns ## COG: SPy1698 COG1307 # Protein_GI_number: 15675555 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 2 278 3 278 280 146 34.0 4e-35 MFKIITDSSCDLTKEEINDLDVSYVPFKITIDGKEFIDDYDFNLTDFLTDMENTKNPITT SCPSPFDYMEEIEKNKDRDIYLVTISSKLSGSFNAAQVAAKGAKEKYPDINIGLIDSKSA SAGQTRVVLKLLEYLKENNSFEETMDKITKYIDAQITMFVLESMQNLIKNGRIKKSAGLI ANVLNIRPIMRSNDGEIELYEMNRGMKKSLDKLMIAIGKLNKNTENGVLSISHVNAKERA ESFAQKAKELYNFKDIVVRQTNGLSAGYADVGGIVIAF >gi|281297825|gb|ADDO01000032.1| GENE 11 7545 - 8681 1026 378 aa, chain + ## HITS:1 COG:no KEGG:Apre_0196 NR:ns ## KEGG: Apre_0196 # Name: not_defined # Def: hypothetical protein # Organism: A.prevotii # Pathway: not_defined # 3 368 4 377 378 136 30.0 1e-30 MAKNNNHIEDFENLIDHAIKEENFKEINEFISQSLNSAVNITKSSINKLFNKTNENRPYR VCDDDNIINQKPKAEKKVRAWSNLAKLSLIFHGIGAISILIDGIHHFDLDSLMVFALYFV PAIIFSLYILYRTDKLKKQIIRFRKYKREIGNNTVIPVMDLAVATSKAKDFTINDLLDLI DKDFFRQARIVENGELLILDSKTYKLYKKEKLNNFNEENEDLEAYDLKASDRDEILSKAR IQITKLANSVDSLKEPMKFKITKLLGTLKRIFSIVKENDVDLKDLSKFIDYYLPTTTKLV ETYKDMQDSPTQSVEVSLKEIDKTMDIINEAFLKLLDNMYEDKVIDISSDISVLKTMLKQ EGLLDDDFILGGNNAKRN >gi|281297825|gb|ADDO01000032.1| GENE 12 8665 - 9786 1546 373 aa, chain + ## HITS:1 COG:BS_yaaN KEGG:ns NR:ns ## COG: BS_yaaN COG3853 # Protein_GI_number: 16077094 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized protein involved in tellurite resistance # Organism: Bacillus subtilis # 21 373 28 386 386 199 38.0 7e-51 MQREIKLSLDGLENNEEDKLETIPEKEVAKREVNLSPEEAKQVEEFAKQIDISNSNLVLQ YGAGAQKKIANFSEKTLDSVKTKDLGEIGELLGNVVTELKNFEIDEEDNKLVSFFKKQVN KANSIRVKYDNAEKNVDNIIKALENHQMILMKDIATLDQMYDLNESYYKELSMYILAGKK KLEEARELELPKLQKEAQNSNLPIDAQKANDYVNLINRFEKKLHDLDLTRMVSIQMAPQI RMVQSSNTIMVEKIQSIMVNTIPLWKSQMVIAMGANHSKEAAKTTKEVTDLTNKLLRKNA QSLNQQSIETANLSERGIVDIETIKYTNDQLISALTEVRKIQEQGHERRIQAEEELAKIE ENLKSSLREIAKK Prediction of potential genes in microbial genomes Time: Mon Jul 18 12:19:02 2011 Seq name: gi|281297821|gb|ADDO01000033.1| Peptoniphilus lacrimalis 315-B contig00066, whole genome shotgun sequence Length of sequence - 1565 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 1, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 18 - 56 -0.6 1 1 Op 1 11/0.000 - CDS 95 - 307 238 ## COG2801 Transposase and inactivated derivatives 2 1 Op 2 23/0.000 - CDS 392 - 928 423 ## COG2801 Transposase and inactivated derivatives 3 1 Op 3 . - CDS 952 - 1509 463 ## COG2963 Transposase and inactivated derivatives Predicted protein(s) >gi|281297821|gb|ADDO01000033.1| GENE 1 95 - 307 238 70 aa, chain - ## HITS:1 COG:HI1721 KEGG:ns NR:ns ## COG: HI1721 COG2801 # Protein_GI_number: 16273607 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Haemophilus influenzae # 1 69 147 215 216 85 63.0 3e-17 MSRKGNCLDNSPMENFFGILKQEIYYGKKFYSYEELKETIEEYIEYYNKDRIKEKLGYLS PVEYREQNVA >gi|281297821|gb|ADDO01000033.1| GENE 2 392 - 928 423 178 aa, chain - ## HITS:1 COG:L0470 KEGG:ns NR:ns ## COG: L0470 COG2801 # Protein_GI_number: 15672806 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 9 174 8 168 272 154 53.0 7e-38 MLEYFDLSKSTYMYWQQRLDRPNKDEQVEKKILDIRKDNPNYGYRRMTAMLKRLGYVINK KKVQRLVQKLKLQVTSFSRKTRKYSSYKGTIGRVADNKINRNFKVEKSYTYITTDTTEFK YLEKDKSGNYQVKKLYLNPYLDMYNGEIISYEISKQPTLKPIIKALDKAIDVTSINKG >gi|281297821|gb|ADDO01000033.1| GENE 3 952 - 1509 463 185 aa, chain - ## HITS:1 COG:RSc1437 KEGG:ns NR:ns ## COG: RSc1437 COG2963 # Protein_GI_number: 17546156 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Ralstonia solanacearum # 1 164 1 158 177 83 31.0 2e-16 MTKYKTEFKMKVVKEYLEGNISYRELAKKYSIPDNYTVRTWVNAYEFQGYDGLEVKRKNN NYSLDFKLNVVNLYLTGEMSYQSLANELKINNPPIIARWVKEFREEGIEGLKPKKRGRPS NMPNKDKNEKIKNKSNKTKEELSELENLRKENYYLQMEVEILKKKIQFSQMTQEEINRYL RSLDH Prediction of potential genes in microbial genomes Time: Mon Jul 18 12:19:23 2011 Seq name: gi|281297755|gb|ADDO01000034.1| Peptoniphilus lacrimalis 315-B contig00045, whole genome shotgun sequence Length of sequence - 71515 bp Number of predicted genes - 66, with homology - 61 Number of transcription units - 28, operones - 16 average op.length - 3.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 3 - 372 513 ## gi|300814487|ref|ZP_07094748.1| signal recognition particle-docking protein FtsY 2 1 Op 2 . - CDS 381 - 3917 3712 ## COG1196 Chromosome segregation ATPases 3 1 Op 3 3/0.000 - CDS 3908 - 4963 858 ## COG1243 Histone acetyltransferase 4 1 Op 4 . - CDS 4956 - 5648 667 ## COG0571 dsRNA-specific ribonuclease 5 1 Op 5 . - CDS 5654 - 5881 460 ## gi|282882391|ref|ZP_06291019.1| acyl carrier protein 6 1 Op 6 . - CDS 5881 - 6867 1352 ## COG0416 Fatty acid/phospholipid biosynthesis enzyme - Prom 6950 - 7009 8.1 - Term 6970 - 7011 7.2 7 2 Op 1 . - CDS 7031 - 10567 4000 ## COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit 8 2 Op 2 . - CDS 10569 - 10715 143 ## gi|300814478|ref|ZP_07094739.1| hypothetical protein HMPREF9131_1444 - Prom 10760 - 10819 7.5 - Term 10726 - 10772 -0.0 9 3 Op 1 . - CDS 10837 - 11751 860 ## COG1493 Serine kinase of the HPr protein, regulates carbohydrate metabolism 10 3 Op 2 . - CDS 11748 - 13607 1972 ## COG0322 Nuclease subunit of the excinuclease complex 11 3 Op 3 . - CDS 13612 - 15372 1877 ## COG0006 Xaa-Pro aminopeptidase - Prom 15401 - 15460 12.2 - Term 15421 - 15451 -0.4 12 4 Op 1 1/0.200 - CDS 15465 - 16916 1471 ## COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases 13 4 Op 2 8/0.000 - CDS 16918 - 17724 733 ## COG3639 ABC-type phosphate/phosphonate transport system, permease component 14 4 Op 3 9/0.000 - CDS 17732 - 18553 792 ## COG3639 ABC-type phosphate/phosphonate transport system, permease component 15 4 Op 4 15/0.000 - CDS 18540 - 19316 323 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 - Term 19325 - 19355 2.7 16 4 Op 5 2/0.000 - CDS 19360 - 20418 1474 ## COG3221 ABC-type phosphate/phosphonate transport system, periplasmic component - Prom 20530 - 20589 9.7 17 5 Op 1 . - CDS 20603 - 21469 761 ## COG0642 Signal transduction histidine kinase 18 5 Op 2 . - CDS 21466 - 22293 603 ## gi|282882371|ref|ZP_06290999.1| putative membrane protein 19 5 Op 3 1/0.200 - CDS 22286 - 23203 274 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 20 5 Op 4 40/0.000 - CDS 23277 - 23960 625 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 23982 - 24041 3.4 - Term 24009 - 24043 2.1 21 5 Op 5 40/0.000 - CDS 24055 - 26175 1428 ## COG0642 Signal transduction histidine kinase 22 5 Op 6 . - CDS 26175 - 26876 717 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 27044 - 27103 79.9 + TRNA 27026 - 27101 86.2 # Trp CCA 0 0 - Term 26954 - 26994 4.5 23 6 Tu 1 . - CDS 27191 - 27538 434 ## COG1393 Arsenate reductase and related proteins, glutaredoxin family - Prom 27565 - 27624 9.5 + Prom 27528 - 27587 9.3 24 7 Tu 1 . + CDS 27671 - 28339 325 ## COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases - Term 28850 - 28891 0.5 25 8 Op 1 . - CDS 28922 - 29407 842 ## Apre_1097 thioesterase superfamily protein - Prom 29464 - 29523 11.6 26 8 Op 2 . - CDS 29526 - 30029 245 ## COG2020 Putative protein-S-isoprenylcysteine methyltransferase - Prom 30054 - 30113 12.0 + Prom 30215 - 30274 6.3 27 9 Op 1 . + CDS 30300 - 30833 464 ## COG0350 Methylated DNA-protein cysteine methyltransferase 28 9 Op 2 . + CDS 30836 - 31393 405 ## PROTEIN SUPPORTED gi|157164512|ref|YP_001467500.1| 50S ribosomal protein L24 (BL23; 12 kDa DNA-binding protein; HPB12) + Term 31428 - 31468 3.0 - Term 31415 - 31455 6.3 29 10 Op 1 . - CDS 31548 - 32618 766 ## HMPREF0868_1057 hypothetical protein 30 10 Op 2 . - CDS 32611 - 33180 510 ## COG1309 Transcriptional regulator - Prom 33228 - 33287 13.5 + Prom 33335 - 33394 9.6 31 11 Tu 1 . + CDS 33427 - 34821 1349 ## COG0733 Na+-dependent transporters of the SNF family + Term 34849 - 34899 6.5 - Term 34832 - 34894 6.5 32 12 Tu 1 . - CDS 34905 - 35162 425 ## Caka_0283 phage protein - Prom 35278 - 35337 13.6 + Prom 35240 - 35299 8.4 33 13 Tu 1 . + CDS 35388 - 36146 629 ## DSY1337 hypothetical protein + Term 36233 - 36285 0.9 34 14 Op 1 40/0.000 - CDS 36286 - 37581 1086 ## COG0642 Signal transduction histidine kinase 35 14 Op 2 . - CDS 37581 - 38279 888 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 38394 - 38453 8.7 + Prom 38179 - 38238 7.7 36 15 Tu 1 . + CDS 38407 - 39300 275 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 + Prom 39395 - 39454 6.3 37 16 Op 1 . + CDS 39516 - 40055 417 ## FMG_1407 hypothetical protein 38 16 Op 2 . + CDS 40064 - 40768 267 ## FMG_1406 hypothetical protein + Term 40778 - 40827 10.1 - Term 40765 - 40815 3.3 39 17 Tu 1 . - CDS 40901 - 41839 929 ## COG0657 Esterase/lipase - Prom 41972 - 42031 12.2 - Term 42060 - 42096 4.2 40 18 Op 1 11/0.000 - CDS 42109 - 43626 395 ## PROTEIN SUPPORTED gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 41 18 Op 2 . - CDS 43626 - 44195 813 ## COG0450 Peroxiredoxin 42 19 Op 1 10/0.000 + CDS 44730 - 45647 916 ## COG0379 Quinolinate synthase 43 19 Op 2 13/0.000 + CDS 45649 - 46911 1393 ## COG0029 Aspartate oxidase 44 19 Op 3 1/0.200 + CDS 46883 - 47728 509 ## PROTEIN SUPPORTED gi|163755345|ref|ZP_02162465.1| 30S ribosomal protein S6 45 19 Op 4 . + CDS 47755 - 48267 576 ## COG1827 Predicted small molecule binding protein (contains 3H domain) + Term 48269 - 48301 3.0 - Term 48255 - 48287 3.0 46 20 Op 1 . - CDS 48422 - 49078 661 ## FMG_1382 hypothetical protein 47 20 Op 2 . - CDS 49133 - 49960 914 ## COG0500 SAM-dependent methyltransferases - Prom 49981 - 50040 5.2 48 20 Op 3 . - CDS 50045 - 50683 452 ## Apre_0710 hypothetical protein - Prom 50760 - 50819 10.4 49 21 Tu 1 . - CDS 51418 - 53151 2087 ## Apre_0739 YSIRK gram-positive signal peptide - Prom 53361 - 53420 15.2 - Term 53407 - 53450 9.1 50 22 Tu 1 . - CDS 53468 - 55969 3092 ## HMPREF0868_0595 LPXTG-motif cell wall anchor domain-containing protein - Prom 56004 - 56063 4.6 + Prom 56458 - 56517 5.4 51 23 Tu 1 . + CDS 56549 - 57442 719 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily 52 24 Op 1 . - CDS 57583 - 57705 100 ## - Prom 57728 - 57787 3.5 53 24 Op 2 . - CDS 57803 - 57946 96 ## 54 24 Op 3 . - CDS 57958 - 58983 944 ## COG1073 Hydrolases of the alpha/beta superfamily - Prom 59043 - 59102 8.9 55 25 Op 1 . - CDS 59268 - 59396 88 ## 56 25 Op 2 . - CDS 59474 - 59782 318 ## gi|282882393|ref|ZP_06291021.1| hypothetical protein HMPREF0628_1276 57 25 Op 3 . - CDS 59786 - 59872 86 ## - Prom 59981 - 60040 5.7 - Term 59930 - 59960 1.1 58 26 Tu 1 . - CDS 60048 - 61463 887 ## COG1373 Predicted ATPase (AAA+ superfamily) - Prom 61507 - 61566 4.3 - Term 62173 - 62216 8.1 59 27 Op 1 1/0.200 - CDS 62253 - 63605 1420 ## COG0534 Na+-driven multidrug efflux pump 60 27 Op 2 35/0.000 - CDS 63627 - 65372 230 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 61 27 Op 3 . - CDS 65373 - 67085 216 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 62 27 Op 4 34/0.000 - CDS 67101 - 68609 267 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 63 27 Op 5 . - CDS 68597 - 69184 429 ## COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters 64 27 Op 6 . - CDS 69096 - 69278 56 ## 65 27 Op 7 . - CDS 69289 - 69891 586 ## CD0429 hypothetical protein - Prom 69964 - 70023 6.8 - Term 69932 - 69999 18.0 66 28 Tu 1 . - CDS 70033 - 71052 1002 ## COG2207 AraC-type DNA-binding domain-containing proteins Predicted protein(s) >gi|281297755|gb|ADDO01000034.1| GENE 1 3 - 372 513 123 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|300814487|ref|ZP_07094748.1| ## NR: gi|300814487|ref|ZP_07094748.1| signal recognition particle-docking protein FtsY [Peptoniphilus sp. oral taxon 836 str. F0141] signal recognition particle-docking protein FtsY [Peptoniphilus sp. oral taxon 836 str. F0141] # 1 123 1 123 421 148 95.0 1e-34 MFNWFKKKNKEKESLIKEDTINNKEENEQITEENSKVNEEIFSEANTLLDEEKNLDLTEE IDNKENIEEDMLEKTSNNSVEVKEEIEENFNTEEIKEEIDVENSSELDNYEAPNEDKGKV NFF >gi|281297755|gb|ADDO01000034.1| GENE 2 381 - 3917 3712 1178 aa, chain - ## HITS:1 COG:BH2487 KEGG:ns NR:ns ## COG: BH2487 COG1196 # Protein_GI_number: 15615050 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Chromosome segregation ATPases # Organism: Bacillus halodurans # 1 1178 1 1180 1188 520 32.0 1e-146 MYLKAVYIEGFKSFAKKTKIEFNKDITAIVGPNGSGKSNITDAIMWVLGESSAKNLRGQK MEDIIFSGTDNMRPLGLAQVTIVFDNSDKSLLSDYTEVSVTRKMYRSLESEFLINNVKCR LKDIKELFMDTGIGKDGYSLIGQGRIDSILSNKAEDRRSIFEEAAGISKYKFKKKESQNK LQRAKDNLTRLSDIISEIENQEGTLKIQMLKAKRYLKIFNELKEKDINFVYFNNQKLQVD LKNLSEEFNQIITKINSIENQISSLNIEEEELEKNLELTEVKIDKNQELINTNNLTKQKN SSNIEILKEKISSLQLTIKNLISDAQKDKEKIENNNESINKNTETLKLNEDKLSELNIII EENKNKLDILKKEIDSQEKFEDSKRKTELELENQIKNLTFKNQTLENFLEDKKQRSQILK NNISNFSENQIELIDSLKVNEEKLKTSQDKLKDKLKESDEITSNLSKLNGEFQSQSKNLE DLNFKSKDILNRLNFLKSLSENYDGYNRSVKSFMNYTNKINLFKNKILGSVGDNIYFEKK YQKAISVALGGSLQNIIVEKLTDVSPMIELLQKKKFGRITFMPLDNIKNNNSNLNLNSYK TMGAIDFAINLISFQDKFYNIYSNLLGKIIVCDNFTNASKLQKTLNNKFRIVTLDGDIFN TTGSITGGYVNKSNLDLISRKNDLKEKKEEFDDINLKIKSQSEKLETLSKNLEKYKILEQ DNKKEINELEQIINSLKISIENIKNSKLNNEEYLSRYNSELDDIYKSLASDELEIENNKK KLEEVNTNLSSLSLSKNDFSNNLLEKKSELESLREEFQENILNRREIEEKNNYLKIEIKR LTDEIKVLDEAINSSYERENNLKNEITLNEESIATFESDLIENENSSSCNIEIDKTLREE KTNLSLKLKEIRENKDKIKEELIDLNNLREKNRSKVERKEEILNDSLRRIEEEYNLTSVN EAVNKDLGRISEKEIKKLKKDLQDLGPVNLNSIGEYELIKERLEMNLKQRQDLLNSGEEI ENILRDLDKEMKEIFKKSFAEISKNFNEIFKILFDGGKAEIELTGEILDGGIEIKAMPPG KRLQSLSLLSGGEKALTAVALLFALLKVRPAPFCILDEIDAALDDANIKKYCDYLKTLEN IQFIMITHRKLTMEIAGTMYGVTMEEKGVSKLYSVKLQ >gi|281297755|gb|ADDO01000034.1| GENE 3 3908 - 4963 858 351 aa, chain - ## HITS:1 COG:CAC1749 KEGG:ns NR:ns ## COG: CAC1749 COG1243 # Protein_GI_number: 15895026 # Func_class: K Transcription; B Chromatin structure and dynamics # Function: Histone acetyltransferase # Organism: Clostridium acetobutylicum # 6 349 7 355 358 278 45.0 9e-75 MSKLNIIPIFVPHLGCPLDCCFCNQKKITGVSTDISSDIVEKTILEYLSYFKRKDNVEVA FYGGSFTAIDKNIQSELLSVAFKYKNKGLVNNIRLSTRPDCIDTDTLDNLKKFGVDIIEL GVQSLDDGVLILSNRGHDSKCVQKSSKLIKDYGFKLGLQQMIGLPGDSFSKSYYTAKEFV KLKPHCVRIYPTLVVKDTALENDLYEGTYDALSLSDSISIVSDILNLYYKNNINVIRVGL QPTENINYNGDVVAGPFHPAYRQLVEGNYLYNCLKNYLLANDEKKDILIYANGRNISNIA GQKSKNKKKLIENLNLNKLVLREKKLDNFTLEINDKYIDIRDYYKMENKCI >gi|281297755|gb|ADDO01000034.1| GENE 4 4956 - 5648 667 230 aa, chain - ## HITS:1 COG:BH2489 KEGG:ns NR:ns ## COG: BH2489 COG0571 # Protein_GI_number: 15615052 # Func_class: K Transcription # Function: dsRNA-specific ribonuclease # Organism: Bacillus halodurans # 6 230 36 262 263 169 41.0 4e-42 MSVDKETLEKNLNYFFKNHALLDKALTHSSYVNENNLKSFDSNERLEFLGDAVLGLVMGE YYYKKYELYNEGELSKLRSASVNEHALAVVANHIKLGELIHFGKGEIKNGGKFRESILAD AFEALIGAVFLDSSFKIARKVILALFEDIFDEIMLYDRDYKSKLQEFVQKDSCTIKYVLT DEIGPDNDKTFSSSVLISGKIYGKGMGKTKKKSEQMAAYEALKVLGDFDE >gi|281297755|gb|ADDO01000034.1| GENE 5 5654 - 5881 460 75 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282882391|ref|ZP_06291019.1| ## NR: gi|282882391|ref|ZP_06291019.1| acyl carrier protein [Peptoniphilus lacrimalis 315-B] putative acyl carrier protein [Peptoniphilus sp. oral taxon 836 str. F0141] acyl carrier protein [Peptoniphilus lacrimalis 315-B] putative acyl carrier protein [Peptoniphilus sp. oral taxon 836 str. F0141] # 1 75 1 75 75 79 100.0 6e-14 MRDTILKLIADEFNMEVSDLREDMSFQDDLNADSIELVELIMSIEDELDVQVDDEKIEEL KTIGDVLEYVEELEQ >gi|281297755|gb|ADDO01000034.1| GENE 6 5881 - 6867 1352 328 aa, chain - ## HITS:1 COG:CAC1746 KEGG:ns NR:ns ## COG: CAC1746 COG0416 # Protein_GI_number: 15895023 # Func_class: I Lipid transport and metabolism # Function: Fatty acid/phospholipid biosynthesis enzyme # Organism: Clostridium acetobutylicum # 1 327 1 329 331 242 42.0 6e-64 MKVIFDANGGDNPKEIIKGAVDASNEFNIDIIFVGEENFIKDCLNDLDYDKDKISIVGAS QKIENDEDPAFALRKKKDASIVVALNLLKESKADAVISAGSTGALLAGGLFLVGRIKGVK RAVLPTSIPGLKKSTMIIDSGANMDTDSILLKQFAQMGSVYLKEYYNIDNPKIALLNVGS EKGKGNSLAKETYELLENSNLNFIGNVEAREITNTEADLVLCDGFVGNVLLKGIEGIAEF ILKSLFYTLKTGHGSDNEKQFMSNILGNFSKKLDAKEVGGTILLGLEKPIIKAHGNSDAK AIKNACAYAIDIYNKELINKIKNNLGEN >gi|281297755|gb|ADDO01000034.1| GENE 7 7031 - 10567 4000 1178 aa, chain - ## HITS:1 COG:CAC2499_1 KEGG:ns NR:ns ## COG: CAC2499_1 COG0674 # Protein_GI_number: 15895764 # Func_class: C Energy production and conversion # Function: Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit # Organism: Clostridium acetobutylicum # 1 413 1 413 413 591 67.0 1e-168 MGKKFKTMDGNEAAAHVAYAFSEVSCIYPITPSSPMAEHIDAWASQGRKNIFGQEVLVKE LQAEGGAAGAMHGSLQAGSLTSTYTASQGLLLMIPNMYKIAGELLPGVFHVAARALASHA LSIFGDHQDVMAARATGCALLCSNSVQEAMDLAGVAHLSALKGRVPFIHFFDGFRTSHEV QKIEVLDYDDLKDLIDKKALKEFKERALNPNGAQTRGTAQNPDIYFQSVEASNKYYDEIP SIVEEYMDRISKITGRNYGLFNYYGDKNATDIIVAMGSVNECIEEVVDYLNSKGQKTGLL KVHLYRPFAVEKFLESIPKTVERIAVLDRTKEKGAPAQPLHLDVRNAFYSSDRSPLIIGG IYGLGSKDTNPSQILAVFKNLKAAKPINNFTIGIVDDVTNKSLDTSEHISTEPEGTIRCK FWGFGSDGTVGANKSAIKIIGDNTDMYAQGYFDYDSKKSGGVTMSHLRFGNHKITSTYLL SESDFISCSKQSYVYQYDLLRGLKQGGKFLLNTTWDDEQLEEHLPNSLKKDIADKKVDFY TINATKIAAEVGLGGRTNMVMQAAFFKLSQVLPLDLAVKLLKEGIVKDYGVKGDDIVQMN YKAVDEGVKSIHQVKINPKWADCKVEDEHSIKGAPEFINKILIPMTRQVGNDLPVSALMD HVDGSFPNGTSKYEKRGIAVNVPHWKIENCIQCNQCSLVCPHAVIRPFLLDKEEAKKKPE TFETMSARGKGLTDYEFRIQISPLDCTGCGNCAQVCPAKEKALVMTPYEKELEVQAINWE FATTVKSKQDNIELNNFKNSQFYKPYLEFSGACAGCGETPYVKLVSQLFGDRMSIANATG CSSIWGASAPSMPYCTDDCGRGPSWANSLFEDAAEYGYGMAVSQHQTRDRIKNLMQEFID LNIDKEVNSIFSEWIEGMDEYKDSKLASAKVINILDKKFNDSKADQIIETLKSLEKFLIK KSQWIIGGDGWAYDIGYGGLDHVLASGEDLNVLVVDTEVYSNTGGQASKATPTAAIAQFA ASGKITKKKDLGLMATSYGYVYVAQIALGADKNQAFKAIKEAEAYKGPSLIIAYAPCINH GIRAGMGKTIEEEKKAVETGYWHLYRFNPELKAQGKNPFVLDSKEPTRPYREFLDGEVRY TSLKKLFPERAERLYEEAEQNAKDRYESYVNAEKATVD >gi|281297755|gb|ADDO01000034.1| GENE 8 10569 - 10715 143 48 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|300814478|ref|ZP_07094739.1| ## NR: gi|300814478|ref|ZP_07094739.1| hypothetical protein HMPREF9131_1444 [Peptoniphilus sp. oral taxon 836 str. F0141] hypothetical protein HMPREF9131_1444 [Peptoniphilus sp. oral taxon 836 str. F0141] # 2 48 32 78 78 74 95.0 3e-12 MGKKALSFTLYFTDFYKKLMEFIAKHKAGFYNYIKYGCLILIKLINGG >gi|281297755|gb|ADDO01000034.1| GENE 9 10837 - 11751 860 304 aa, chain - ## HITS:1 COG:CAC1089 KEGG:ns NR:ns ## COG: CAC1089 COG1493 # Protein_GI_number: 15894374 # Func_class: T Signal transduction mechanisms # Function: Serine kinase of the HPr protein, regulates carbohydrate metabolism # Organism: Clostridium acetobutylicum # 1 300 1 299 304 233 41.0 4e-61 MTIKLENLVKKMKLEVINKSSDYSNINIENDEINRPGLQFLGKFDKFVDGRIQIIGDSEW AYLNSLTEKEAREAFEKLLKFKFPCIIFTRNNKIFPFVFELAKKYDISILKSSDTSTKFI IELILMIDEELAPTLRVHGCLLDIYGVGVLIMGRSGIGKSETALDLISNGARLISDDIVI IKNINERLVGKSPNITRHFMEIRGVGIIDVQKMFGIGFVMEEKEVEIIVELVDWDESKEY DRLGIDYAYENLLGMKVVKFTIPVKPGRHTSLIIEVATRHFKQKELGYNPALELNKRIIE EKKI >gi|281297755|gb|ADDO01000034.1| GENE 10 11748 - 13607 1972 619 aa, chain - ## HITS:1 COG:CAC0508 KEGG:ns NR:ns ## COG: CAC0508 COG0322 # Protein_GI_number: 15893799 # Func_class: L Replication, recombination and repair # Function: Nuclease subunit of the excinuclease complex # Organism: Clostridium acetobutylicum # 1 618 1 621 623 566 49.0 1e-161 MINIKERLAQLPDKPGVYIMKNSTDEIIYVGKAKSLRKRVRQYFGSYGKSSAKVKSMVSH IYDFEYIIVENEVESLILESNLIKDNLPKYNILLRDDKQYPYIKVTTNELYPRVMKTRRI LKDGAKYFGPYPDVYAVNDSIDTFESLFPLRTCSLNMEKNMGKYRPCLNFYIGKCLGPCQ GNVDENSYKKMIDEILDFLSLKSDAILTRLEDKMKEFSYNLEYEKAAEIRDRIKNLKELR EKQLISNPMSTNDKDIIALAKGIDEVLIQIFFIRDGKIIGREHYMLNDYFNEPLEEIFSA FIKQFYNGTSYIPKEIIIEEEPAQKEVLEEWLSTKRSNKVTITVPQIGQKKELIQMVHKN ALDMINKYGDKYAKRAKSNALALEEITDILGLDIKLNRIEAYDISNISGVESVGSMVVFE KGESKKSDYRKFRIKTVIGPNDYASLKEVLTRRFLRGINERIDKEKGPSSFSRFPDMIMM DGGKGQVNIALDVLKELGVNIVVIGLVKDDFHTTRGIIYNNKEYSLDLDSKGYKMIYKIQ EEAHRFAINYHRSLRNKDMFKSELDDIPLIGEKRKNNLLKHFKSLDKIKKASVDELKEVS GMDIRSAESLYNHFNGVKK >gi|281297755|gb|ADDO01000034.1| GENE 11 13612 - 15372 1877 586 aa, chain - ## HITS:1 COG:FN0453 KEGG:ns NR:ns ## COG: FN0453 COG0006 # Protein_GI_number: 19703788 # Func_class: E Amino acid transport and metabolism # Function: Xaa-Pro aminopeptidase # Organism: Fusobacterium nucleatum # 3 584 7 584 584 463 44.0 1e-130 MILDKLRKEMKKFGVDYYIVPTLDPHSCEYLPDYFKEREFITGFTGSAGTAVIGDDFAYL WTDGRYYIQAQKQIKDFGFSLMKQGQEGVVNFDKWILENIKDGQSLAFNDLYFLQSTYEK LEEALKKKNVKIKSCDLIKDLWENRPEFPHAKAFVFEEKYAGESFEDKLKRIRQKLNEKK ADMIVITNLEDICWALNIRGEDILYTPVVLSYLIIEENKATLFLQKEKAKDIKESLKNVV EIKEYDDFYMELEKYKNKNIFIDKDRVNRRVFKSLEDNNKFIFGTNITNDLKAIKNPIEL ENQRQTYIRDGVALTKYIYWLKNKVKDEEIGEYDAQLQLDKFRAEEDLYFSNSFETISAY GSNAAMMHYSAHKDKQSPLKAKGFYLVDSGGQYFTGTTDVTRTIALGELNKEEITDFTLT LKCHLDLMDTIFLKGTTDLGLDAICRYPLWQNHMDYKCGTGHGVGYFLSVHEGPQRISPN TSVHEMKVGMIVSNEPGVYKENKHGIRIENIMEVIEDGKYSDGTFYKFNTMSLCPIECEA IDVELLTDRELEVINEYHKRVYEKLSPFLQEPVKEWLKEVTKKLER >gi|281297755|gb|ADDO01000034.1| GENE 12 15465 - 16916 1471 483 aa, chain - ## HITS:1 COG:SA0140 KEGG:ns NR:ns ## COG: SA0140 COG0737 # Protein_GI_number: 15925849 # Func_class: F Nucleotide transport and metabolism # Function: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases # Organism: Staphylococcus aureus N315 # 8 471 10 491 511 229 29.0 6e-60 MTKIIYTSDVHGYLFPTDYLDRNIKKKGYISFIDQINSYRDENTILLDAGDILQGSSLAY YLEKENNPELMADILNEFKIDYYTLGNHDFNYGYAYLKKFVDRRNSTLICANVKDKNKEI KTNDYIIKKLNNGKTLGIIGVVTDWIKLWERKENIENFIITKPLDAISDNFKYIKDCDYK ICLYHGGYDIDLETLEKNTKTDENVGGEILKNFNFDLLLTGHQHMPFEGKKIYNTYTSQA PANGEGFVLVDLDKKSSKIIKGQKINTNIYNKYKYIDDKVQDFLDNKLCKLKRPYPDEDK IQRAKHGSILADFFNKIIIDYSKADISITSFANEISGLSEDVSIREILNTYRFPNTLTVL EISAEKLKKALEQNFTYLENENTINKNFLIPKEEHYNFDFFYGIDFDVDFTKDFYERISN ITFKGKPVKDGDKFKIAMNNYRATGAGNFDMYKDLKVVKSFDKEISEILIDAFRSGRASE LEK >gi|281297755|gb|ADDO01000034.1| GENE 13 16918 - 17724 733 268 aa, chain - ## HITS:1 COG:L99004 KEGG:ns NR:ns ## COG: L99004 COG3639 # Protein_GI_number: 15672284 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate/phosphonate transport system, permease component # Organism: Lactococcus lactis # 3 268 4 269 269 251 51.0 1e-66 MDKIEKKYREEPNNKLYIFTIVVTLLAILIWSSSVVNFDNSAGDGLSIAKNIFKGILNPD KELLFSLNSKGVIYLLLETIAIAFLGTVIGAIISIPLAFLASSNIVPKQIAFLTKLLIMV IRTIPAIVYGLMFIRVTGPGPFAGLMTMSFTSIGMLTKLFSDTILDLNKNILESLEALGC TSFRKIRFGILPQLSANFISTGIYRFDMNLRDASVLGLVGAGGIGSPLMFAINSYRWNQV GSILIGLIVLVIIIEFFSTKIRRKLVRG >gi|281297755|gb|ADDO01000034.1| GENE 14 17732 - 18553 792 273 aa, chain - ## HITS:1 COG:L98204 KEGG:ns NR:ns ## COG: L98204 COG3639 # Protein_GI_number: 15672283 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate/phosphonate transport system, permease component # Organism: Lactococcus lactis # 3 272 1 269 270 234 51.0 9e-62 MSLYDKIFKPKVYKLSNGKLVYEKRSRIPFILSVLFIFSFISIKITGFSLSVLIKNFGEF FIILKEIFNPNLSYFKSVIEPLFDTIKMSFLGSFLGAFVAIFFSFLASNNMVKSKIINSL TKLLFSIIRTIPTLVSALIFTYIFGLGTFAGTCAIFLFSFSYVGKLLYEQIETVNMGAYE ALISMGYTSPLAFIKGIIPQILPYYLSTSLYNFEGNVRYAAILGYVGAGGLGLLINENIN WRDYNRVGTILLALLITVFLIENISHYFRNKLN >gi|281297755|gb|ADDO01000034.1| GENE 15 18540 - 19316 323 258 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 235 1 228 245 129 33 6e-29 MIKFTNVDKVYPGGFKALKDVNLEIKDGEFVAIIGRSGAGKSTLIRTINKMHDITGGSLT VGDINVSSLKGKELRKFRRNVGMIFQSFNLVDRMSVINNVLTAFVPELSPIRSIFGIYPK EYKIKALESLEKVDILDKAYVRADNLSGGQQQRVALARTLAYNPNIILADEPVASLDPIN ARSVMSYFKRINEEMKITILLNIHHVDLALEYATSVIGIKDGQIIYHGPSKDVNDKILTQ IYGDSIDEIKKGEKNESI >gi|281297755|gb|ADDO01000034.1| GENE 16 19360 - 20418 1474 352 aa, chain - ## HITS:1 COG:L96217 KEGG:ns NR:ns ## COG: L96217 COG3221 # Protein_GI_number: 15672281 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate/phosphonate transport system, periplasmic component # Organism: Lactococcus lactis # 1 337 1 335 349 276 49.0 4e-74 MKKILKVVMALGLIFALTACGGKNTANSSNGEGEKGESKKIEKLTVQFVPSRDPEQIVTQ TEPLKNILKDKLKEKGYEVGDVDISVGTNYETTGEALSAGSVDVGFIPGGTYVLYSDGCE ALLTATRKALSVESDNPKEWNDKKPTKQLDDNMASFYRGLIIAGPSEKGKELAQKVNNGE KLTWDDLNSAKWSVMGSSSSAGYIYPYLWLEKNYNKGITDLANVVQADSYASSAARLASG QVDIIIGYGDLRLDYADKWQSEFARSASIWDETNVIGVTDKIYNDTISVSKKSEIMTDDF KNALAQSFIEIAQTEEGKQIISIYNHEGYEKAEDKNYDGEREAQKLLKDAKN >gi|281297755|gb|ADDO01000034.1| GENE 17 20603 - 21469 761 288 aa, chain - ## HITS:1 COG:CAC2730 KEGG:ns NR:ns ## COG: CAC2730 COG0642 # Protein_GI_number: 15895987 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Clostridium acetobutylicum # 4 286 10 298 303 91 28.0 2e-18 MIILLILFIILSIFYAYKYYTIKINIEKIDKNLDFRKNKKSEVEAQLSTKNKSLLNLYEK YNEMSNKLMEKNERIIELKDNYGKLLSNLSHDLRTPLTSIIGYLNLLDIKDKEQEKILDI AVDKAYFLNNLVEKFYQLSLINEKNSLDFENFDLVQLIYQTSFNYFDKFKKIDQEIEIKL PQKYIISSNKNSFESILTNILDNMYKYSRGNNKIELEDSHKLRLIFSNDIEYKDGQLNYL FERSKVLDPSRKNATGLGLSIVKAHLDKLFLKANIFVKDKKFYLIIEE >gi|281297755|gb|ADDO01000034.1| GENE 18 21466 - 22293 603 275 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282882371|ref|ZP_06290999.1| ## NR: gi|282882371|ref|ZP_06290999.1| putative membrane protein [Peptoniphilus lacrimalis 315-B] putative membrane protein [Peptoniphilus lacrimalis 315-B] # 1 275 1 275 275 425 100.0 1e-117 MINLIDAELFKIRKMKGQKVLTALIWFFALSPIFILLFCISTGNVATITVPDNFGLSEAI STMLIMICFCANFFVILPVSFAFSGEITKGNARRAVEASHSRSSILTAKIISEYLYSLFL IITTLFIGIVSTVILLQVIGKMNFGDVKTIVMALKALLISFVPASASLCFLNLAYIVLGK DLLVVIVYTIYFSLNQILEFIQMILYKFPTGFIDLIKDYTPSALYFDVIGYLSSVEFNRA LPISTGVYKDILLLAIYIIIFTGLSYFLIRKRDFK >gi|281297755|gb|ADDO01000034.1| GENE 19 22286 - 23203 274 305 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 1 303 1 305 311 110 26 3e-23 MEKIIELTDVNKSYDKKHKALENMNLNVYENDIFGLVGSNGAGKSTILKLLSGAILKDSG HISILGNSDDDLIKSFSKMGFLIENPLFYDELSGMNNLIYLCKLRGMKIDNALEIAKEFG IYKHLSKKVKSYSTGMRQRLGLVGAFMAKPKIILLDEPINGLDPEGITFLRNYLLTINKS WQSTIIISSHILNELSLIATRYAFIKDGKLIEEISKEEFEDKSKQFISIELEKEDLEKAT ALLEMKFNVKDYKVYPDGELRIYENFNTKDLQKFLVENAIFLKSIKVKEKSLEEYYLERV GENND >gi|281297755|gb|ADDO01000034.1| GENE 20 23277 - 23960 625 227 aa, chain - ## HITS:1 COG:CAC0860 KEGG:ns NR:ns ## COG: CAC0860 COG0745 # Protein_GI_number: 15894147 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Clostridium acetobutylicum # 4 226 7 230 231 193 50.0 2e-49 MNKILVVEDDKDINNLLKIILESNGYEVCQAYSGKMGLEMLNDDFDLVLLDLMMPLVSGE EMVVKMRAKNFNMPVIIITAKIDEKTKFYTFDIGADDFITKPFEKADLLNRVKANIRRYR HLNSNMSKNSILEFKNLKLYEDENRILIKGEELKVTPIEFEILKILLKNPNKIFSKENLY RSVWNDEYFFEDDTINVHISNLRSKIKKLDTEEYIETVWAVGYRLKK >gi|281297755|gb|ADDO01000034.1| GENE 21 24055 - 26175 1428 706 aa, chain - ## HITS:1 COG:BH1154_2 KEGG:ns NR:ns ## COG: BH1154_2 COG0642 # Protein_GI_number: 15613717 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Bacillus halodurans # 469 706 34 270 274 224 49.0 4e-58 MENSENIKIEKKYTIWKFFGILFLVAAISVGIAFPLNNFLDPNSANINSTVADYVSRTLI NSLYNENNFNNFDSFDSFDYFVKSYKLKYYDSLGNKIPDDDIEKRLEFKEKKEKLISQGL NPSDFMTSEDLKIADINKRYETFYINKENNREIDPESISTNKDTIFAISGSFSNGNLKTD IKTSSDEYLYARKLKDEFLRRLSNNFSQENELKNIINLRFYYKVDLNSPAYMQMVKDAER PNYYAFAFSAVIVNFILMFLVSIFLKFKKMMNCKEIKNLFSLPIEVVIVLFFIFLFVSFA SIETFDRNIIPVEYSIGIYSVLSVIANVIISLCVNYVVLAIKSFHYDGADNLLLKNSLIR RLFSGVFANIGNAKNQADLSRAKNRFFLAYILIIFLGLMYMLVFMMPYSHMRFLTFFLYF LVFSLIYILLSKALDEIGRINIESTKIVKGDFDYNIQKHYRVFDNIIDNFNSIGLNLDKA VEEGIKSQKMKTELITNVSHDLKTPLTSIINYSDLLNKDSSNSQKAKEYSKIIYDKSLRL KTLIEDLFEVSKASSENIQLNLEKIDFKALILQAMGEWEDKFKEENIEFVSNLPENPLIL DLDGQKISRVLDNIFSNIYKYGAEHSRVYIDLISDNKVKLFVKNISKYPLNISAEELMER FTRGDKSRNTEGSGLGLSIADSLINAHKGEFHIEIDGDLFKTIIIL >gi|281297755|gb|ADDO01000034.1| GENE 22 26175 - 26876 717 233 aa, chain - ## HITS:1 COG:BH1153 KEGG:ns NR:ns ## COG: BH1153 COG0745 # Protein_GI_number: 15613716 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Bacillus halodurans # 4 225 5 229 232 216 49.0 2e-56 MKDFKILVCEDDKNIANSIGLYLENEGFSVIYAYDGLEAIEVFKNQGADLIIMDLMMPRL SGEEAIKKLRDISFVPIIILSAKSEDYDKVIGLNIGADDYITKPFNPLELIARVGSNLRR YHSYDNLASSEIIQIGNIKLNTFEKTCSVDDKIINLTSLEYKILEFLMKNPNKVFSIESI YEHVWNEPAIEAKTVTVHIRRIREKIEVDPKRPMYIQVAWGLGYKFVDNKRRK >gi|281297755|gb|ADDO01000034.1| GENE 23 27191 - 27538 434 115 aa, chain - ## HITS:1 COG:BH3485 KEGG:ns NR:ns ## COG: BH3485 COG1393 # Protein_GI_number: 15616047 # Func_class: P Inorganic ion transport and metabolism # Function: Arsenate reductase and related proteins, glutaredoxin family # Organism: Bacillus halodurans # 1 115 3 117 119 105 50.0 2e-23 MIFIGYKKCSTCKRISKQMDEKNISYKYREIDKENPSREELESWYQKSGLDIKKFFNTSG KVYRENNLKDKLKTMSLDEKLDLLSKDGMLVKRPILLDGDKIFVGNQVEKYVESF >gi|281297755|gb|ADDO01000034.1| GENE 24 27671 - 28339 325 222 aa, chain + ## HITS:1 COG:CAC0884 KEGG:ns NR:ns ## COG: CAC0884 COG0664 # Protein_GI_number: 15894171 # Func_class: T Signal transduction mechanisms # Function: cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases # Organism: Clostridium acetobutylicum # 1 216 1 215 229 61 24.0 2e-09 MDKEILKKSLIFKNMDDKQIEKCLQALKAREKNFEKSSIILGAGQITESMGLVLSGNINI ESYDIYGNRTILSNINPGHIFAETYAILKNEPMLVSVVANEDSKVLMLNITNLQNIINAK EDWSTKLLMNLLMISSNKNLILSNKIFTNSPKTIREKVLVYLNFISLKKNSNEFNIPFNR KQLADYLNIDRSCLSNELGKMQKEGLITTKKSHFIIHKKTTK >gi|281297755|gb|ADDO01000034.1| GENE 25 28922 - 29407 842 161 aa, chain - ## HITS:1 COG:no KEGG:Apre_1097 NR:ns ## KEGG: Apre_1097 # Name: not_defined # Def: thioesterase superfamily protein # Organism: A.prevotii # Pathway: not_defined # 6 161 4 159 159 223 71.0 2e-57 MSQENKKIAIQETYGPRFQYCWGCGPKNEDGLHMKSYPSESGDECICTVRPDKMYTGGVP KNLFGGMIAMIFDCHGTASAAWFNHRNKNLELTEETVIGRYITARLEINFKKPVPMEEDI TVIAKAEEIGERKIIVSMEMHAGGEIRAEAKMVAVGVKDNM >gi|281297755|gb|ADDO01000034.1| GENE 26 29526 - 30029 245 167 aa, chain - ## HITS:1 COG:PH1225 KEGG:ns NR:ns ## COG: PH1225 COG2020 # Protein_GI_number: 14591044 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Putative protein-S-isoprenylcysteine methyltransferase # Organism: Pyrococcus horikoshii # 7 160 19 158 173 60 31.0 2e-09 MKNKNNLPFFGVGPFYVITCLIITLLSLLLIKNGYFNFAKIKKEMILHSIFNLLAYFFVI FGIYLWVRAVIIQKVNKKVQQGLLLKDGIYSIVRNPIYSAFLFIFTGILFLSMNYILLVL PFFFWIFLTVLMKNTEEKWLREKFGKEYIDYCKDVNRVIPWFAKNKY >gi|281297755|gb|ADDO01000034.1| GENE 27 30300 - 30833 464 177 aa, chain + ## HITS:1 COG:SA2335 KEGG:ns NR:ns ## COG: SA2335 COG0350 # Protein_GI_number: 15928126 # Func_class: L Replication, recombination and repair # Function: Methylated DNA-protein cysteine methyltransferase # Organism: Staphylococcus aureus N315 # 1 177 1 171 173 140 45.0 9e-34 MSFKWKYKTPEQFDDLMMISDGQNLTALFFINSCYPYKEKEDLQIKNLPIFDNTCKWLDE YFSGLVPNFTPKIKINNLTNFRKKVSDIMAQIPYGKTITYSDIACKIAIERKINKMSSQA VGGAVGFNPICLIIPCHRVVGKNGSLTGYGGGIKNKYYLLKHENNDMSKFFIPKMRT >gi|281297755|gb|ADDO01000034.1| GENE 28 30836 - 31393 405 185 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164512|ref|YP_001467500.1| 50S ribosomal protein L24 (BL23; 12 kDa DNA-binding protein; HPB12) [Campylobacter concisus 13826] # 1 175 1 180 185 160 46 2e-38 MKRCKWCNLNNKLYVDYHDNEWCVPNHDDSYLFEMLILESFQAGLSWETVLNKREYFKEA YDNFDIEKIIYYGEDKIKELLENKNIIRNKLKIKSSISNAKIFKDVQKEYGSFYNYLKSF TGEKIIYEIGQTSNKISQNISKDLRKRSMKFVGPTIIYSYLQGTGFIYSHEKDCFLYKKS IEKNL >gi|281297755|gb|ADDO01000034.1| GENE 29 31548 - 32618 766 356 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0868_1057 NR:ns ## KEGG: HMPREF0868_1057 # Name: not_defined # Def: hypothetical protein # Organism: Clostridiales_BVAB3 # Pathway: not_defined # 1 352 1 352 358 315 53.0 3e-84 MYKIIEVYFDLFYLLLVMGFSIRLLLERGKRPRVLAIMSFLLVIGDAFHLLPRIYGHLSA GGLEANRVYLSYGMMVTSFTMTIFYMLFYYYYKLSGGKTNRFRNLTLFLFFILRIIFLLL PANNWGGVSPYYMSILRNIPFLTMGILLITWIYKDKNLSYMKNISYLIAGSFFFYSLVVV FSEALPIFGAFMLPKTVCYILIVYHLYKIEVPEFENQELFKSAISALILSMILGVFYREF TKLFYYQAFTSLSLAHGHTLILGCLFSFILYLLYRIEDLNIEKIKKIYGIYIISLVYFIS SFIVRGIYQITASSVKIYSDELLAGFAGIGHIILAVSLISILIKSCNNMQKNVAKQ >gi|281297755|gb|ADDO01000034.1| GENE 30 32611 - 33180 510 189 aa, chain - ## HITS:1 COG:L53789 KEGG:ns NR:ns ## COG: L53789 COG1309 # Protein_GI_number: 15672643 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Lactococcus lactis # 1 189 1 184 189 104 34.0 8e-23 MPKETFFRLKENKQNLITEGLIEEFKDKNLYQATVKDIVQKLQIPRGSFYQYFESLEDAY FYVLDKKINYIHLAFLELYLKNKDNLKDVLLTYRDFLSEEIYKDENYKLLHNRYLSWNSQ LERNWRKYQGSKKDFLDIKLMYENKRLNIIGWLIHMLMQKLFEDSWDKDRFICEYEELVK FIMGGINYV >gi|281297755|gb|ADDO01000034.1| GENE 31 33427 - 34821 1349 464 aa, chain + ## HITS:1 COG:BH1128 KEGG:ns NR:ns ## COG: BH1128 COG0733 # Protein_GI_number: 15613691 # Func_class: R General function prediction only # Function: Na+-dependent transporters of the SNF family # Organism: Bacillus halodurans # 1 459 3 451 453 227 33.0 3e-59 MKKKTGFTGQLGFIFAAAGSAVGVGNLWRFPYLAAKDGGGVFLLIYLLLVFTVGFVLLTN DLAIGRRTGRSAIYAYESIRKKWKFLGIITFLVPVIIMTYYAVIGGWILKYIALFLSGNV NVAAQNNCFSNFISSKNSVYYSLVFMALTAIIVYSGVDKGIERVSKIIMPILLVMIIGIA IYSLTLKTTTDNGQVRTGLQGLAIYLKPDLTGMNISRFLQISLDAMSQLFFSLSVSMGIM ITYGSYVNKDVDLQKSVSLIELMDTGVAIIAGVMIIPAIYVFSGVNGMSAGPGLMFISLP KVFSQMLAGRFIGFVFFVLAAFAALTSCISVLESLVANYIEILNAQRQRATVVVSIIYLI ATAIIALGYSVFYVEVILPNGSTGQLLDIMDYISNSFMMPFISFLSSIFIGWVIGPKWII EEVERNNKAFNRKVLYTFVVKYCLPIIMFILFLQSTGLFNYFKS >gi|281297755|gb|ADDO01000034.1| GENE 32 34905 - 35162 425 85 aa, chain - ## HITS:1 COG:no KEGG:Caka_0283 NR:ns ## KEGG: Caka_0283 # Name: not_defined # Def: phage protein # Organism: C.akajimensis # Pathway: not_defined # 3 84 6 87 88 100 69.0 3e-20 MVWDEKTGKAVGGNDDKYVVLQVVLTEKFLGTGSGTSSLTNLQAAINKQAALGYRLHTIT TSSSGSKGFLGGDKIQATMVFERID >gi|281297755|gb|ADDO01000034.1| GENE 33 35388 - 36146 629 252 aa, chain + ## HITS:1 COG:no KEGG:DSY1337 NR:ns ## KEGG: DSY1337 # Name: not_defined # Def: hypothetical protein # Organism: D.hafniense # Pathway: not_defined # 28 242 24 245 259 86 30.0 1e-15 MNKNNIKTNKILKFISVFLILIVLIITNLFFGNPISKTIVNINANKYIAENYKGLDLKTN KVIYNFKDGYYYINLQDKNSIDSNFTLSFDSFGRLKFDTYGDRIFNTYRRFLYSLNNYGK KLEKENNLSYEISLYPTEESDLESKLSLDQKFLIENFPADVEVNSITYSKKPNIEEAIKI LQNTQKIMDTTDLKVTKYSIIMIPQENKKKDGQAESWENSLSIFDITDYIIRDNKINELE KLYKIQSETVKK >gi|281297755|gb|ADDO01000034.1| GENE 34 36286 - 37581 1086 431 aa, chain - ## HITS:1 COG:CAC0290 KEGG:ns NR:ns ## COG: CAC0290 COG0642 # Protein_GI_number: 15893582 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Clostridium acetobutylicum # 5 431 11 467 467 83 22.0 6e-16 MFNYIIKRFKKIVIRILFLMFFLIFLLMSFLYLNYRLNKKYPKPDDVYSYVENNKSDLYL SEKNKEFLKRENIWAIRLDRQGKIIESFNKPKVVKDKFELRDVAGFTRYYLNDYPVFTYI VGDGLLVFAYPKNSLDKLPFNYYNYENFIFNIKLIVFFLLLFLVFVYVIYKIDIKEIFKN ILPFQRAIDTLYEDDYQKLDEYGELKELAFSINRANEKYNNLKESQSKWIRGLSHDVRTP LAKISWELSKENKEDIDTQNIKDQVLKISNILEGLNLTLSLSNIDKENFKLESPLKVIRK LIVDKLNENPGREIIFESKLKDQNIKINMDANLFYRMLENILKNALIYTEGKIQVKISDD NSNLLISILDEGGGISENSIEKIKKDDLTNITRHGLGIFISKQIAELHDGTFSIKNKDKG LEVSFIFKFTN >gi|281297755|gb|ADDO01000034.1| GENE 35 37581 - 38279 888 232 aa, chain - ## HITS:1 COG:BS_yvrH KEGG:ns NR:ns ## COG: BS_yvrH COG0745 # Protein_GI_number: 16080375 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Bacillus subtilis # 6 232 135 365 369 152 36.0 7e-37 MDFRNNFSLLIVDDEKSLLENLYNFLKNKGFKKIYTAKNLKESKFKLENNEIDLIVMDLM LSDGSGFDLLKEVRKSSDVAVIILSALDGIDDRREGFENKADDYIVKPFFPDELLWRIDA VLRRSKKIKKEDKIYFSNVIFDKSKGVIEKKGEEIALTATQFKILDYLCENMNMIVSIDR ILEYIWKDSYGYENTLITHIYRLREKLEDNPREPKILITIKGLGYKLVKEDE >gi|281297755|gb|ADDO01000034.1| GENE 36 38407 - 39300 275 297 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 1 292 1 298 305 110 30 2e-23 MEKILEIKDLKKSYKKRVVLDLDSLVIEEKSIFGLIGKNGAGKSTLMKLILGLVKKDQGT IKVFGCQLNSKNQKDINKNLGALIENPSFYDHLSAYENLEIICQLKGIKKDDISKTLDLV GLKNVGKKRLREYSLGMKQRLGIAIALIGNPKLLILDEPINGLDPQGIEEMRNLFKNIVK NTSTSILISSHILDEIEKISTHIGILKEGKLTYKGSLEEYRKLHPPYISIITSDNKKALL LLDLDENRMDGKKIILGKKSNQEIADIVKFLNGKVDIYRIEEEKESLEQLFIQESRS >gi|281297755|gb|ADDO01000034.1| GENE 37 39516 - 40055 417 179 aa, chain + ## HITS:1 COG:no KEGG:FMG_1407 NR:ns ## KEGG: FMG_1407 # Name: not_defined # Def: hypothetical protein # Organism: F.magna # Pathway: not_defined # 1 179 72 250 250 203 73.0 2e-51 MEIEEKNNMWQMQIMLGEKVNSILIDKFKNLSFSLVLLQISESIVFILLAKKSVNFIVNN EIILRFCLVNLTALLINLFLLVIFIIIEMKTKKVYTLSFISIVGGLTGIITMLTSNILTF FNPFAWMASLLNISYVKEGGKFVQVLNPINFYTLIIALIFLIFGIIYLKTMKSYNLYKD >gi|281297755|gb|ADDO01000034.1| GENE 38 40064 - 40768 267 234 aa, chain + ## HITS:1 COG:no KEGG:FMG_1406 NR:ns ## KEGG: FMG_1406 # Name: not_defined # Def: hypothetical protein # Organism: F.magna # Pathway: not_defined # 1 234 1 234 234 278 76.0 1e-73 MLKIELKKIKFINILLASLIIPLLANAFGLINYMANRETLTHQWQSLWTQVSLFYFSFFY IPLIAIVIASLWSSEHKAGLKFIRMSPKKNMAFIIAKIILALIIISLCQIYFLTLFYMGG KFIGNFPRADFGIYFYYIILSIFLALPIIAIFSSLAIRIKSFGIIVLLSVIFTMVGFAFA YKSLKIIGLSFLAIEANNFRFINSYDFILLGLFAIGEFIIFIYLSNKFLRYENK >gi|281297755|gb|ADDO01000034.1| GENE 39 40901 - 41839 929 312 aa, chain - ## HITS:1 COG:SPy1308 KEGG:ns NR:ns ## COG: SPy1308 COG0657 # Protein_GI_number: 15675257 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Streptococcus pyogenes M1 GAS # 61 310 80 320 327 64 22.0 2e-10 MSLIYKISAEIVRLIGVKKIFLMNKDEILEYARGENAKVVFDFDKAVKRAKRKNYYIFDR DVMGYRIISYQKNEKPSNGAILYLFGGGMITQPDKLDFSLAERIMKRTGKDVWFLFYPLC SEDVKVDTTYEVSFEAYRLMTETYRAENISVLGFSSGACISIGIFLHNNALGRPLPMPGK IIAVSAGCIPDLSLDENEKLWEKLKELNRKDIMIDPTYIKTAREIAKGDKDLPEYMLDGT KGDFTDFPKIYFYFGENECLYAFAGEFQKAMEKYHVPYEIIVGKGMCHCYPLVRFFREGR EAQDEIIELLKA >gi|281297755|gb|ADDO01000034.1| GENE 40 42109 - 43626 395 505 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 [Streptococcus pneumoniae SP6-BS73] # 206 502 1 303 306 156 32 3e-37 MLDQNLKNQLKEYLKLLEGEVLFTLSLDDSEKSKEVKNFVEEIVSLSDLLKIEEKKLDLS PCFSLSSNGRSGISFAGVPLGHEFESFVLALLQISGRPPKIDDNQVRRIKSIDKELSFET VVSLSCHNCPEVVQALNIMAVLNPKISHRMVDGASFQEYVDGLGVMAVPASFLNGKSFYN GKINLNKILDLVTGQKEGPSLKDKPIYDLLVIGGGPAGATAAIYGARKGIKTGLIAKDFG GQVKETLAIENITGFAYTEGPKFMEAVKEHVLKYKVDIIDEVEVESIQEADPIKIKTDSG ELQAKSVVIATGAKWRLIGIPGEIEFRNKGVAYCTHCDGPLFKNKKVTVIGGGNSGIEAA IDLAGLAKEVLVLEFLPELKADSVLQEKLKTLKNVRVVTNAQTKALEGKEKLESIVYEDR IGGETHKEATDGCFIQVGLVPVTEWIDGIEKNKRGEIIVDQVGATSMSGVFAAGDCTNSA FKQIVIAQGSGATAALGSYQYLMRK >gi|281297755|gb|ADDO01000034.1| GENE 41 43626 - 44195 813 189 aa, chain - ## HITS:1 COG:L135351 KEGG:ns NR:ns ## COG: L135351 COG0450 # Protein_GI_number: 15672319 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peroxiredoxin # Organism: Lactococcus lactis # 1 189 1 187 187 273 69.0 1e-73 MSQVGKKMPEFVTNGYNPKKEEFVTVSNKDFEGKWNVLMFYPADFTFVCPTELEDMQDQY AKLQSLGVEVYSMSCDTHFVHKAWHDHSEAISKLEFTMLADPHKSIARDFYVLDEEAGLA QRATFIIDPDGVIQTVEVNADGIGRDASQVYDKIRAAQFVRENPGQVCPAKWKESGKTLT PGLDLVGKI >gi|281297755|gb|ADDO01000034.1| GENE 42 44730 - 45647 916 305 aa, chain + ## HITS:1 COG:FN0008 KEGG:ns NR:ns ## COG: FN0008 COG0379 # Protein_GI_number: 19703360 # Func_class: H Coenzyme transport and metabolism # Function: Quinolinate synthase # Organism: Fusobacterium nucleatum # 16 305 5 297 298 297 56.0 1e-80 MENLKDLKFNEKVQLLNRLKAEKDAVILAHYYVNEDIQAVADYIGDSFFLAQKATELKEK TIVMAGVYFMGESVKILNPSKNVLMPDIDADCPMAHMVSIQKIKEVREKYDDLAVVTYIN STAEIKAYSDICVTSSNAAKIVNKLKEKNIFFIPDKNLGDYVKKSLPDKNIILNDGYCPV HDEIDASDIKAYKGKVKIFAHPECRKEVLDLADFIGSTKAIINESGKYDDVLVVTEEGIF TELKKKFPNTNYRKLIKKPICNDMKKLTLDKIIDVIENNKNQVNVSEEISSKALIPLKRM LKLGA >gi|281297755|gb|ADDO01000034.1| GENE 43 45649 - 46911 1393 420 aa, chain + ## HITS:1 COG:FN0009 KEGG:ns NR:ns ## COG: FN0009 COG0029 # Protein_GI_number: 19703361 # Func_class: H Coenzyme transport and metabolism # Function: Aspartate oxidase # Organism: Fusobacterium nucleatum # 1 420 3 434 435 383 51.0 1e-106 MKKYDILIIGSGLAGVSTALELSKSYKIGLVTKKKLADSNSYLAQGGINVLKDESDRKTF IEDTLKAGHYKNSLQAVEMMVDKSQDAIKFLIDLGVEFTKKDGKLEYAQEGGHSIARGLH IDDEIGKGILDVLYEKVKSRSNIDIFEDTPIVDIIVNNGKCYGARTLDEVFVSTNVVLAT GGLGGIFKKSTNFPHICGDGYAMAIKNGVKLKDISYIQFHPTSLYEEDVERQFLISESAR GEGAQLLNHKSERFTDEMKPRDIVAKAILKEMEKEGVDFEYLSMKPLGEDKIPNRFPMIF KELKNRGIDARYDNIPIVPCQHYTMGGIECDINGKTNLQGLFAVGEAGNVGIHGSNRLAC NSLLECVVFGRILADYLNENKFEDKEIDFKITDEKIDKEKSSEIIFERIREDEKAKSISN >gi|281297755|gb|ADDO01000034.1| GENE 44 46883 - 47728 509 281 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163755345|ref|ZP_02162465.1| 30S ribosomal protein S6 [Kordia algicida OT-1] # 16 276 18 283 286 200 42 2e-50 MKKLNPFLIDKYIICALKEDMNSGDITTDSILKNENAQINLIAKDKGIIAGLDVFERVFE IIDSNSYFEFNFSDGDEVNKSDLIGTIDAKASAILKAERTALNFLQRMSGIATYTKKMVH ALGSCHVKILDTRKTTPNMRIFEKYAITLGGAYNHRYNLSDGIMIKDNHIDAAGGIRNAV DRVRSANPFVKKIEVEVENFDQIKEALDAKADIIMLDNMEIEDIKKACKIINKRAIIECS GNISLENIKNYRDLDIDYISSGSITYNAGVLDLSMKNLKIY >gi|281297755|gb|ADDO01000034.1| GENE 45 47755 - 48267 576 170 aa, chain + ## HITS:1 COG:SP1234 KEGG:ns NR:ns ## COG: SP1234 COG1827 # Protein_GI_number: 15901096 # Func_class: R General function prediction only # Function: Predicted small molecule binding protein (contains 3H domain) # Organism: Streptococcus pneumoniae TIGR4 # 4 169 2 171 171 143 46.0 2e-34 MNNSKSRRENLLKFLYENQKPISGENLAKNFDVTRQVIVQDIAILRASGKNIISTNRGYY LNEERTQKVFKVKHSDRDIRKELNSIVDLGGTIKDVIVHHKVYGEIKKDLNCSSRRDVKI FLDKMSKEKSKPLDVLTGGIHYHTVVAENKEVIEEIEVVLKELGFLIEEE >gi|281297755|gb|ADDO01000034.1| GENE 46 48422 - 49078 661 218 aa, chain - ## HITS:1 COG:no KEGG:FMG_1382 NR:ns ## KEGG: FMG_1382 # Name: not_defined # Def: hypothetical protein # Organism: F.magna # Pathway: not_defined # 1 208 1 208 208 308 72.0 1e-82 MKYKCFYFLFFKRPMKKVLEEKYDKAYASEIIRKSKKVYRELVENMDDIGKDNPMLYNEL FALAFVSPYLASDKKIPPKTIQEMMERSLYYIKWYFARTDLNTDKGKASNKKSIVKYSKW YTEEREKKYPSSFKVDFVGKPYEGACYYRITRCPICSYTKKLGVGELMPLLCELDDVMIK IQHGVLYREGTIADGADYCDYFIIGDKEKLSDFQDSKI >gi|281297755|gb|ADDO01000034.1| GENE 47 49133 - 49960 914 275 aa, chain - ## HITS:1 COG:MA3915 KEGG:ns NR:ns ## COG: MA3915 COG0500 # Protein_GI_number: 20092711 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Methanosarcina acetivorans str.C2A # 111 227 148 257 293 67 36.0 3e-11 MKQVNFMDDNKTKADYKNWVPKSLLRNLIFASLIAFILFIVFGVSDFVFSGKTRLIFALI FGLATLILIFFAIWMRFLHRAFDYNGKRKLAKIIIERTADYVKIPDGGVGLDVGCGSGAL SIACAKKNPKATMVGCDIWSGSYKSEFSKKLCEDNAKLEGLANVKFEEGNAVNLPFEDQS FDAVTSNYVYHNITGQNKQKLLLETFRVLKKGGVFVIHDLMNKSSYGDMNKFMEKLKKDG YQDVRLIDTTRGLFMGHKEALLLGLHGSTILIGRK >gi|281297755|gb|ADDO01000034.1| GENE 48 50045 - 50683 452 212 aa, chain - ## HITS:1 COG:no KEGG:Apre_0710 NR:ns ## KEGG: Apre_0710 # Name: not_defined # Def: hypothetical protein # Organism: A.prevotii # Pathway: not_defined # 1 212 1 212 212 317 85.0 3e-85 MTLYRSILIGLLASFLMFLGDMTLYYDSKDYDGKDTINSIIGIMKNVSIKRLYIGGLLGP ICAFIYCIGFYHIVLGIDEKFLNFGWFVFLLNVLGMILGGTYHIQCAYLGLLSRYENKGA FDEFLRFLKFQAKIVFTTMAIANLALALIILFGFTVFPRWQALFTPIFLLIFTPIAERLP KGLHMIIRGGWLNIIYFIYYLSLLINYTNINL >gi|281297755|gb|ADDO01000034.1| GENE 49 51418 - 53151 2087 577 aa, chain - ## HITS:1 COG:no KEGG:Apre_0739 NR:ns ## KEGG: Apre_0739 # Name: not_defined # Def: YSIRK gram-positive signal peptide # Organism: A.prevotii # Pathway: not_defined # 72 296 735 955 2035 106 33.0 3e-21 MKKVVATTMATLLFGLSFPVNTFALPDNEVSVNSQIIERLSLSKSGEASQSLDGGLHQAE EDTIAKKIGDNLEAKDITVWQNDTVNWKDGVKLKTDNEEFKGYLEEASVTDLDNRNTNNS NTNTNTNDDRAFKGKLRVTFKDQSVIEIADQKLYVTSKMTSVGNSKAPKNAVDVKLQLGE GVKDSNGNIGNKDNPVEYGSYRIKPGVNILNEEHPQIKNSLFNLVKLQVSDPEKYVDPQW KSESADGKDFVVRENNKIFTATASKLFTMTFEFVGFDKDSKSDISYDKMPESIKEKLPQV KKIKEGQAFAPEKFEKIIEKSGKNKYEWNFSSWNPTSSLSVSENINFVGTWTRSKVVENS NSEVKPSPGKKEDKKERPQEGNKPKDNSKEQDNKNKNNGKSYNYFPRIKSSENKNNSNKN YTRTSKEETKKETSSKAIKYTLNLNSGEYEILINGKVIKRQMDVKPLIKNDRLMLPMRNL AEMIGAKVEWDSKTRTASFTNNGLVAKIQIDGNEIVLSNGKVIKLDSKPLIINGRILLSA SYVANVFGLTNGNTKDGIDQNIEWNSDNKTVEINLNK >gi|281297755|gb|ADDO01000034.1| GENE 50 53468 - 55969 3092 833 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0868_0595 NR:ns ## KEGG: HMPREF0868_0595 # Name: not_defined # Def: LPXTG-motif cell wall anchor domain-containing protein # Organism: Clostridiales_BVAB3 # Pathway: not_defined # 1 399 1 437 535 246 40.0 5e-63 MKKIIKRFFVALLATMTMLTCVGGGIYAEENVSKVNKSIFSEDKTRESALTLVSKPTGIE NNVGEIEVEVGQTAKDTGFINTFKTSEAVAGGLQYGTTTFSTSLSGVVVDGKYYDIQNDP SGVGKMMKYVSQSSESAVSVNYDIKNKTGGKEITYAFTGNKATDEGKDVYVYYHYSVNGK AANGQEITRGGYLGYKIKVTPAKGGLIYDANGGTIKGQAKFDDVEHRKEGIKVPGEYYPK AKIDIISDEPVRDGYKFAFWYEEELYPKDKEVYTDKALDTEVYPVPDGKHFTIYEMSLFN KSRTKTLKAAWDKKYSLKYDVDGNVIKEEKKLLGLNLNDLSIKSKDIEVGDGAKKANGGE FKCWRDGTTDYAPGAKITLNENKSDVTLKAIWNITTEYVDNKGKALQEPVVGETKGEQKT FDGYKFVKEETTENGVKYIYEKIKITTEYVDKDGKALQEPVVGETKGEQKTFDGYKFVKE EATENGVKYIYEKIKITTEYVDKDGNALPGLVVGEENGHKDIAGYKFLREEKTANGVKYI YEKISAPNPNSNLQLLPQDEPNVNHDWDYIPYWYSHSTSSFPFYVSVSKEDEDKKEIKEV KEVKEVKEVKEEKTKVVKEDHNAYIMGYPDNTVRPNNTLTRAEAVAMVTRLSKLDLSNHS RASYADLKDKAWYLPNINAGLKAGMLDADKNGNLRPNEPVTRAEFVKMVAAIDKAGVEKA PFNDIAGHKYEKEINQLYSNKRIFGYGDGSFKPDAFLTRAQAASILNRVFNRVTDAEALK GFEDKIHKFSDLDKNAWYYYEMVEATNNHESESRNEKDSFNRDLERWTKLLND >gi|281297755|gb|ADDO01000034.1| GENE 51 56549 - 57442 719 297 aa, chain + ## HITS:1 COG:CAC0875 KEGG:ns NR:ns ## COG: CAC0875 COG0697 # Protein_GI_number: 15894162 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Clostridium acetobutylicum # 8 281 14 287 306 173 36.0 3e-43 MNNKNYTKGLFYATLGALGWGISGICSQYLFMNYDVDSSWVTAVRMVLSGILLLGFGGIK DKDKLIKIWTVPKDVAWLFAFAILGLLMVQYAFISAIKYSDTATATVLQSLNVVIMIVFM SIVTKTMMKFSQIIAVFLAVFGTYLISTGGNPNTMNISTYGLIFGLLSAVGVITYTLFSR PIIVSWGNIIVTGWGILIGGIVISIITKAWIIPKEMDFMGWLMIAIIIVIGTAGGFSIFL EGVKHIGPVKATLIGCLEPASATLLASIFLGMRFSLVELGGFFLHFVDSLFICQGQG >gi|281297755|gb|ADDO01000034.1| GENE 52 57583 - 57705 100 40 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MINKNANEKINVFGNEGKIMDFFNSIGNENISTSQEVNRE >gi|281297755|gb|ADDO01000034.1| GENE 53 57803 - 57946 96 47 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MQEIIIKIMIIDGYDKDTELRISLNDFYGKKYLKEKCLVMFSKSILE >gi|281297755|gb|ADDO01000034.1| GENE 54 57958 - 58983 944 341 aa, chain - ## HITS:1 COG:CAC3407 KEGG:ns NR:ns ## COG: CAC3407 COG1073 # Protein_GI_number: 15896648 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Clostridium acetobutylicum # 58 299 150 397 431 119 34.0 9e-27 MKKVFFRIFFVVIIIIALVFILRIYNDKKYKDINTLNFPEYYKDVTNISLYPTDIDGVDV TYVDEGKMQGFRFVPKEKSHKGLVICYGGSEGSPNFENAEILAKEGYETFALFMFGMKNQ EQTLRKIPLEQFEDVINYINKNIKDNKPISVLGASKGAEYALNLASKYPEIDNLILIAPS AYNFAGLDFKDYGSSWTYKGKELPYIDIKKSSFNSFLKNILVPAIIKSPISFKDTYNSAI EKDSSSQEKLIPVKNVKANILMIAGEDDLMWDSLAMAKKIKDQNPNAKIYPYKGAGHIFA GNGVLNLGKIIIATGGTTEGNEKARSESRKTIDAFLKENHK >gi|281297755|gb|ADDO01000034.1| GENE 55 59268 - 59396 88 42 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKGKVLERFNLPIIFKDRHSDLSKGSYKVIDNNKQRPIGPNY >gi|281297755|gb|ADDO01000034.1| GENE 56 59474 - 59782 318 102 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282882393|ref|ZP_06291021.1| ## NR: gi|282882393|ref|ZP_06291021.1| hypothetical protein HMPREF0628_1276 [Peptoniphilus lacrimalis 315-B] hypothetical protein HMPREF0628_1276 [Peptoniphilus lacrimalis 315-B] # 1 102 1 102 102 189 100.0 4e-47 MCSSDTNKEDLCKRLDNELTKRSTSILAMHEDKVVRRIEYHFYSCFQDGYRICYVDWVYV LPDNRNKGIAKKLFDEMTKDFGKNNIDEFRLITTTNKNANDF >gi|281297755|gb|ADDO01000034.1| GENE 57 59786 - 59872 86 28 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MEYTFEKLNKDNFNKYYDYLLLAMALEP >gi|281297755|gb|ADDO01000034.1| GENE 58 60048 - 61463 887 471 aa, chain - ## HITS:1 COG:FN1715 KEGG:ns NR:ns ## COG: FN1715 COG1373 # Protein_GI_number: 19705036 # Func_class: R General function prediction only # Function: Predicted ATPase (AAA+ superfamily) # Organism: Fusobacterium nucleatum # 42 464 3 423 430 331 47.0 2e-90 MSDMELFLNRFELYDLTLYNILRLSSKTEIILNRKRCGRIEIKRDYYLDKLIRKKDNGFI KIITGIRRSGKSYLLNNLFYNHLTQSGVDENHIIKFAFDSARDLLKIGEDLMDLDLLSGE RLVDPKKFLDYIMSQTNDSEKFYILLDEVQLLKSFEQVLNGFLRQDNFDVYVTGSNSKFL SKDVITEFAGRGDEIRVMPLVFSEFLQTYDGDKEDAFAEYQVYGGLPAGALMKIDEDKMK YLKVQLENVYLRDIVHRYDIRLTAELEDLLNILASGISSLTNPSKIASTFKSIKKTEISA NTVDKFIGYFEDSFMLKRVYRYDVKGRKYIGTPYKIYFEDVGLRNARLNFRQIEPSHLME NIIYNELRYRGYMVDVGVVMKRENINNKDIKKQLEVDFIANLGSKRYYIQSAYSLPSIEK INQEKASLLNISDSFKKIVIVKDRIKPFLDENGILTINLFDFLLNKESLDL >gi|281297755|gb|ADDO01000034.1| GENE 59 62253 - 63605 1420 450 aa, chain - ## HITS:1 COG:MA2050 KEGG:ns NR:ns ## COG: MA2050 COG0534 # Protein_GI_number: 20090897 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Methanosarcina acetivorans str.C2A # 6 437 4 440 468 199 31.0 1e-50 MKQDMKEQLLTKRPIDLLFQLSIPAVIGMIVIGLYPLMDGIFAGNIIGQTAMTACGVAMT LTFFNSGVSTLIGVGSASVLSRAIGKGDKKTVDKIMGNLIFWVILFSSIITIGGILLAPH FLDMVGASGEIKEYGIRYLRVIFIGSLFVNFTQSANMVMRGEGLMKKAMLIMGLGAFLNI ILDPILMKLMGKYAIEGAALATITAQLVQAIITLHYFKYKSKSVKINKIKSDQEIKKEMF GVGSSAMMMQILFMIQQTMLYKMSFKYGGDTNAILMAATLRIYAFSFIPLWGMSQGLQPV VGTNFGAKKYDRVKEAMKVFSIGGLVLASIFWIPALAFSKNILSLFGVEESIITQGIGNF RLFYSIFILYGVMVMTITFFQSIGNAKKAGIIVMLRQLFLFVPAMIILPMVFGVKAVWFA EPLVDLIMIIAGVVMMFGELNRMDKIGLKN >gi|281297755|gb|ADDO01000034.1| GENE 60 63627 - 65372 230 581 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 338 560 2 228 245 93 28 3e-18 MKELIHKLYWVAGKESSKISKMFFFEVLKSIFEGISLGATMLLLLKIFQNIFEGRNITKE DIYVVFAIALLSVVGKILSSYMADRNKYIATYNMGAENRLYIGDQLKKVNMGYFSSNRLG NISGGLTTVIGELETVGVNIIETLFVGVIQTIIMAIFMIPFDIVTGSIILGTLFLGMLCN AIFQKKSDELTKKLQALKINLNASTLEYVKGISVIKSFGKSGEMTKELDREIYKNRKGFI NVEKTVAPAALIFIIIFKLGICLIIFSAIYRFCIGEIDHYKAVMLVVSSFIVFSGFEMAG SMQNVRGIAIQNLDSIAKLRNLPTISEGIRTSFERGDINLKDVDFSYDKQKLFSRLNLDI PKGKTTAIVGGSGSGKTTLCNLIARFWDVDSGEILIDDNNIKDFRYDNLLSNFTFVFQDV YLFDDTIKNNIKFGNPEASDEEVINVAKQAQCHEFIMKLSDGYDTVLQEGGSNLSGGERQ RISIARAMLKPSRIVILDEATSSVDPENEQQLITALNNLLKDKTVIVIAHKLETIKNADQ IVVMDKGNIESIGKHKELIEKSRIYKSFIEKREKATGWKIE >gi|281297755|gb|ADDO01000034.1| GENE 61 65373 - 67085 216 570 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 327 557 131 361 398 87 28 1e-16 MEVLKKHIGQILSSVIIAIIGVFCSVVPYFALAKITQNIAINNTELEFYIRPILFILGGL IGSVIFHEISTLISHNLAFRIIEDERKKLVRKINRLSMGEIEKRSSGEWTQFMVETLNKI EQPIAHVIPEVIANLIIPIALVVIIFIIDWRIGIANLITLPLGVLFSILMMGGYEEKSRN YQEAAKNMNTTAVEYIRGIQVIKAFNKSASSYGKFVDAVNSNRDSMLNWYLSVCFYMTAA MEVLPSTLLFVLPTSLYLYMNGSIEVGNLIMCVLLSYACYKPLIKAMSYMDTMANVRVVI DEIKNVMELPELERGNGKEKIRSYDINFENVCFAYNDKKKVFDNLSFSAKENKLTAIVGY SGVGKSTIAKLIAGYWNINKGKISVGNVNLKDVSLEKNMELVTYVSQENYLFRKSIIDNM RMANQNASIEEIKDACKKASCHDFIMSLPNGYETIIGESGSNLSGGERQRLTIARALLKD SPIVLLDEATAYSDPDNEAEIQKSIDALVKNKTVIMIAHRLSTIIGADKIIVLNNGEIEA EGTHKELLEKSETYAKMWKSHISLSNDRGE >gi|281297755|gb|ADDO01000034.1| GENE 62 67101 - 68609 267 502 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 282 486 7 217 311 107 32 2e-22 MSYMRGASLNNKVEIRKLSFSYNSNKDEQLKDINLDIKNGECCVIIGESGCGKSTLTRAI NGLIPNFYEGNLDGEVFIDSQSIRNLKSWEIAKLVGNVFQDPRSQFFANEVNGEIAFGPE NLGYKRDEIIRRVNESSEKMNIDKLLNNRIYNLSYGIRQKVAICSARAIEPSIYVFDEPS ANLDLQSIYKFSKLIMDLKNEGKTIVIVEHRLFYLKGIADRYLLIQNGSLINSYKAEEFE KISSKDLNALGLRSINLNDIVVDDHKVKEKEISSDNSFDFEVKNICKKYKNNFVLKDASF KFDSNETIALVGINGTGKSTLGKICSGLQNQTAGEIKINGHKANKKMRLSKVWYIPQDLD SQLFGEDLMDELLTGLKNREDYITKAEELLKKVGLFDIRDKHPATLSGGQKQRLVLCVAM LREIPFIILDEPTSGLDFRSMDKVGTLIKEEQKKGTKFLIISHDIEFIAKTCDRLVKLEN GTITEDFYIDNIGQLLRAMEAK >gi|281297755|gb|ADDO01000034.1| GENE 63 68597 - 69184 429 195 aa, chain - ## HITS:1 COG:SP1437 KEGG:ns NR:ns ## COG: SP1437 COG0619 # Protein_GI_number: 15901289 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, permease component CbiQ and related transporters # Organism: Streptococcus pneumoniae TIGR4 # 58 183 12 132 147 63 33.0 2e-10 MHALFVGWLCMLLAYFGFIKQSIIYFMIYSFATFWLLKMIPSGVVIISPMLLGMLYKFIV PIMAGFLTFKIPSGKLISIFHKLMLPRNFVLILTVIIRFVPTIAGEFRTIKEAMKVRGFT GNFFHILSNPLRTLEYAIVPLIFRSIKVGDELSAAAIVRGIENPIKSDSYYSNRLCKLDI IIITISFILFILCLI >gi|281297755|gb|ADDO01000034.1| GENE 64 69096 - 69278 56 60 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGNENRKNKWNNLSFFNYYFLFGVNIYKKLLYACSVCRMALYAFSIFWFYQTEHNLFYDI >gi|281297755|gb|ADDO01000034.1| GENE 65 69289 - 69891 586 200 aa, chain - ## HITS:1 COG:no KEGG:CD0429 NR:ns ## KEGG: CD0429 # Name: not_defined # Def: hypothetical protein # Organism: C.difficile # Pathway: not_defined # 1 200 1 200 200 288 80.0 9e-77 MNNKKMTTKDVVTVAIMIALFYAISIVIGMSMVAVPVVYIYGTAGIEMFIGAIFYLVAAN RLNKHGLLFIWILIYGLITAAMGYVFMLPYFIGLAILCEIVMIGKDTYINPIRNMIGWSV YGAGMFMGIGVPCWIAWESYQKQALESGFADKTLALQYNLVSSPKLLLLGVTITVILSAL GVLFAQKILKKHFKRAGILE >gi|281297755|gb|ADDO01000034.1| GENE 66 70033 - 71052 1002 339 aa, chain - ## HITS:1 COG:RSc1813 KEGG:ns NR:ns ## COG: RSc1813 COG2207 # Protein_GI_number: 17546532 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Ralstonia solanacearum # 207 339 170 303 303 64 28.0 4e-10 MVYNLIDYYDALGGGVLELNHEDIIENVLEGYMFSEKKVTDECKIYTIENSTGCGEMRCY NLFEGVQLSYNNLNMETAYQKINPKSGVLEIDHCLEGCYEFKLENNERALIGKGDLSVIE IGKVPFEDSCIPTKKYVGLSIFIDIEKAQNSIDKYFPYAKIDLLEIKERLCKNGPALIIH SRHEIDHVISELYRVDSRIRLSYSIIKTIELLLFLNLVESSDTFKLTSFSEPVYKATVES YKTILNNPFERYSISDLSKKYAISESSLKRCFIYITGSSIGNFIRGNCLEAAAKLLIHKP LMSIGEISDLSGYLNPSKFSESFKKHFGQTPQEYRKKSI Prediction of potential genes in microbial genomes Time: Mon Jul 18 12:21:31 2011 Seq name: gi|281297720|gb|ADDO01000035.1| Peptoniphilus lacrimalis 315-B contig00019, whole genome shotgun sequence Length of sequence - 36142 bp Number of predicted genes - 35, with homology - 33 Number of transcription units - 12, operones - 7 average op.length - 4.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 1 - 2923 3438 ## gi|282882407|ref|ZP_06291034.1| iron Transport-associated domain superfamily 2 1 Op 2 . - CDS 2984 - 3634 689 ## gi|282882418|ref|ZP_06291045.1| hypothetical protein HMPREF0628_0369 - Prom 3672 - 3731 3.5 3 2 Op 1 . - CDS 3845 - 4438 483 ## COG0716 Flavodoxins - Prom 4471 - 4530 3.8 4 2 Op 2 35/0.000 - CDS 4537 - 5295 234 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 5 2 Op 3 33/0.000 - CDS 5285 - 6274 829 ## COG0609 ABC-type Fe3+-siderophore transport system, permease component 6 2 Op 4 . - CDS 6261 - 7142 1079 ## COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component 7 2 Op 5 . - CDS 7129 - 7275 122 ## 8 2 Op 6 . - CDS 7278 - 8120 994 ## Sgly_1485 NEAr transporter 9 2 Op 7 . - CDS 8117 - 9583 1419 ## gi|282882430|ref|ZP_06291057.1| hypothetical protein HMPREF0628_0376 - Prom 9621 - 9680 14.1 - Term 9619 - 9664 2.8 10 3 Op 1 . - CDS 9839 - 10672 803 ## gi|282882428|ref|ZP_06291055.1| hypothetical protein HMPREF0628_0377 11 3 Op 2 8/0.000 - CDS 10681 - 12339 176 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 12 3 Op 3 . - CDS 12332 - 14041 1307 ## COG4988 ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components 13 3 Op 4 . - CDS 14044 - 14406 70 ## COG2832 Uncharacterized protein conserved in bacteria - Prom 14438 - 14497 7.2 - Term 14791 - 14821 1.2 14 4 Op 1 . - CDS 14822 - 15376 487 ## Amet_3673 hypothetical protein 15 4 Op 2 . - CDS 15385 - 15468 74 ## 16 4 Op 3 . - CDS 15478 - 15903 567 ## Apre_0891 hypothetical protein 17 4 Op 4 . - CDS 15908 - 16807 883 ## COG1242 Predicted Fe-S oxidoreductase 18 4 Op 5 . - CDS 16797 - 17243 551 ## COG1225 Peroxiredoxin 19 4 Op 6 . - CDS 17236 - 17565 649 ## gi|282882404|ref|ZP_06291031.1| conserved hypothetical protein 20 4 Op 7 . - CDS 17593 - 18924 1022 ## CLOST_2059 hypothetical protein 21 4 Op 8 . - CDS 18933 - 19682 855 ## COG0760 Parvulin-like peptidyl-prolyl isomerase 22 4 Op 9 . - CDS 19731 - 20420 615 ## TepRe1_2353 acyl-ACP thioesterase - Prom 20444 - 20503 7.8 + Prom 20389 - 20448 12.4 23 5 Tu 1 . + CDS 20662 - 22482 2057 ## COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains + Term 22533 - 22579 4.4 + Prom 22659 - 22718 10.5 24 6 Op 1 . + CDS 22795 - 24033 1248 ## COG1253 Hemolysins and related proteins containing CBS domains 25 6 Op 2 . + CDS 24033 - 24524 523 ## COG4894 Uncharacterized conserved protein + Term 24547 - 24601 7.3 - Term 24544 - 24581 5.7 26 7 Tu 1 . - CDS 24587 - 24943 303 ## gi|282882424|ref|ZP_06291051.1| conserved hypothetical protein - Prom 25095 - 25154 8.2 + Prom 24948 - 25007 9.7 27 8 Op 1 . + CDS 25169 - 26137 1316 ## COG3191 L-aminopeptidase/D-esterase 28 8 Op 2 . + CDS 26184 - 26945 623 ## COG4684 Predicted membrane protein 29 8 Op 3 . + CDS 26964 - 27752 1039 ## COG1521 Putative transcriptional regulator, homolog of Bvg accessory factor + Term 27805 - 27851 -0.5 - Term 27786 - 27848 13.1 30 9 Tu 1 . - CDS 27863 - 28675 718 ## COG0796 Glutamate racemase - Prom 28713 - 28772 5.0 - Term 28749 - 28787 7.2 31 10 Op 1 . - CDS 28800 - 30905 2578 ## COG4666 TRAP-type uncharacterized transport system, fused permease components 32 10 Op 2 . - CDS 30895 - 31425 319 ## Clos_0677 hypothetical protein 33 10 Op 3 . - CDS 31425 - 32486 1527 ## COG2358 TRAP-type uncharacterized transport system, periplasmic component - Prom 32544 - 32603 8.0 - Term 32620 - 32652 -0.1 34 11 Tu 1 . - CDS 32867 - 34189 1636 ## COG0527 Aspartokinases + TRNA 34452 - 34527 90.6 # Lys CTT 0 0 + Prom 34837 - 34896 9.9 35 12 Tu 1 . + CDS 34934 - 36121 1420 ## CTC01949 hypothetical protein Predicted protein(s) >gi|281297720|gb|ADDO01000035.1| GENE 1 1 - 2923 3438 974 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282882407|ref|ZP_06291034.1| ## NR: gi|282882407|ref|ZP_06291034.1| iron Transport-associated domain superfamily [Peptoniphilus lacrimalis 315-B] iron Transport-associated domain superfamily [Peptoniphilus lacrimalis 315-B] # 1 908 1 908 974 1575 100.0 0 MKKIKLSYLFILISLFLTVAFPLNSYADAVDKTTSPKNWDDIAIKDEKTGIKITNYLMLL FKNRKEYFSLIHDYENKKWYDKGNFTSEAFRDIQERAKKSFTIEVSELDKNSPEMKNFIN KFGKKTLKYKSKNGEEYSYYGYKIKVNKNYDGNFFRFATYDLSIPLKYKYKYKDENGNLL EETKNSIWVEGAFICQNNKRDKNNIEEVRAWDYLPADEKNNAEVKLSEVNMNLTSGEAYI FLASGNIPNIPKNMAPGEYTVPMMGRMLAEPGSMSMADNALDKTGVIKVDKYGNKTLFLG FHVITKGGLQGHLLRAKYKDSIKDEEKKFAGIVDYYTDERRQYPKTLSIPLKTDEYMKEI EVYVDAMDEFPQSFWATMNVEGHFAEGWTKNRTKINGLTIKKVDMNADGSYEADTTMLKG SDSIQNSYTDKKFKKTEGEDKPKYKITIKNGRAELQLLDDNKNRYFEIISDSSDNKNSKI FYNYNKEKPLELKDIFSEIITKEVYNEEGKSLGTKTLAKGIVLKDVDLNDLIKLEKPSTQ PQKNQLLWIINMGKNYSLKEENGKTIIYDEKSLRNIDVPNVNFFSFKSLNEKPILNTKDL KDIISQAEKLNQGNKTNKAFDELKSAIASAKLALEATEQKQIDDAKTELQNAINTFNKSA EEKLEENPNAEKTYSIPVKVWNYSAPGKESMADKAIEHTAKVTIKGNTATVDVTFNGLKF MKMYGHLTNLFTFEDNDPSKAAIETTVVKKVKDTDLSGNQKEFPKVFRFTMTKDKFLAQA DKSIYIKVWVDAMDEIAGKGQGGGEQKARLIFDISSMKESGGNSGANVQDGDISSSTADI KEIRGMLKDSLNTANAVSASKGADSFLTIAIANATNVLANPKASASEIRSAMNNLNTASA RNNPTGSKNNNANQNNGNNPFNNNSWGNNNNPWNNNNWGNNNSGFNNNNWGNNNNSSWGN NQNNNNQNSGPVTI >gi|281297720|gb|ADDO01000035.1| GENE 2 2984 - 3634 689 216 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282882418|ref|ZP_06291045.1| ## NR: gi|282882418|ref|ZP_06291045.1| hypothetical protein HMPREF0628_0369 [Peptoniphilus lacrimalis 315-B] hypothetical protein HMPREF0628_0369 [Peptoniphilus lacrimalis 315-B] # 1 216 1 216 216 397 100.0 1e-109 MNKIKKLAVTLLVLFMLVPTFAFAQEVKETPELKAKIQNIVNTMPEDDAIEAIENLFGEN DRPHFATRSASNFAIYKTASNDRSMADNAFTEESNVKIVDGKAIFTLYTQPIYYLNHQAD VTGITIITNTKKVYNAERYGEKAPAARYGDPNDMVPVKLIFSIPLKEVDESNVPGYDKSI TVKFDTNLIDDFKLNMEDVFPDKMGNPQARILFNIN >gi|281297720|gb|ADDO01000035.1| GENE 3 3845 - 4438 483 197 aa, chain - ## HITS:1 COG:FN0772 KEGG:ns NR:ns ## COG: FN0772 COG0716 # Protein_GI_number: 19704107 # Func_class: C Energy production and conversion # Function: Flavodoxins # Organism: Fusobacterium nucleatum # 1 194 1 169 169 63 26.0 3e-10 MKGLILYSSKTGNTKIMAEQIYKKLKEKFQIYLCDISSIDNSGAVPCNLGADPLGLSLDM EKSSKEKIENFDFVLLGAWIDRGTLNKNAMKVFKRIKNKKIGLFATLGAMPNSDHGKNVK KTLEELLKNKESLGTYLCPGQVDPKMIKKLEGLTGMVVPKKIKDKMIQTSLKSRKATEEE LKDAGEYFYKKINSITT >gi|281297720|gb|ADDO01000035.1| GENE 4 4537 - 5295 234 252 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 219 2 221 245 94 28 7e-19 MEIKHLFFSYGKNQVIKDLSIEFEEGKITTLLGSNGCGKSTLFNLCTRNLKAKMGMISLN GKNINSIERKEFAKKVAIVRQKNHIAGDIKVEELVAYGRNPYINFMARPSKKDYEKIDKA IELCGLEKIRKEKVNSLSGGQVQRVWIAMALAQDSQILFLDEPTTYLDIKYQIEILKLIK DLNRKLKKTIVMVLHDINQAIEYSDYLVGMENGQIIFQGQDNILTGELISRIYQTKLRIV EFENKKFVLAEN >gi|281297720|gb|ADDO01000035.1| GENE 5 5285 - 6274 829 329 aa, chain - ## HITS:1 COG:BH3296 KEGG:ns NR:ns ## COG: BH3296 COG0609 # Protein_GI_number: 15615858 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-siderophore transport system, permease component # Organism: Bacillus halodurans # 4 329 2 327 328 264 48.0 2e-70 MKKTKTITVFSIAILILIILSLISAKAGSLEMSFSKLINGLFVEYDEEVASVFDLRFPRI IIAILAGASLAVSGVMLQAVMQNPLTDPGIIGISSAASLTGTLITLIFPSMFYMIPALSV IGGLIAYLLIYSLAWQGGTNPIKLILVGVALNLVFLGISDFIKQLNGGTLTNVQSIIEGN VAQKTWSDVKIMAIYGIIGLILAMFTIKSCNLLALEDATAKAIGVNVNRDRFLVALVAII LASISTSIVGIIGFLGLIVPHIARLIVGSNHKYLLPFSAILGSITLLLSDTLGRTIAYPY EIKPQVLMTVFGGIFFIGLLKIGGREYGN >gi|281297720|gb|ADDO01000035.1| GENE 6 6261 - 7142 1079 293 aa, chain - ## HITS:1 COG:SPy1795 KEGG:ns NR:ns ## COG: SPy1795 COG0614 # Protein_GI_number: 15675633 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-hydroxamate transport system, periplasmic component # Organism: Streptococcus pyogenes M1 GAS # 18 289 17 287 294 297 55.0 2e-80 MKKIKNFLILSLVLIMTMTSCVDQHSKSKKSKGNELRIAATSMATVYIMEKLNVDLVAVP DSKIDPMPERYKDVPKIGMAMTPDIEKLKAINPDYVFSPVSLISDLLPKYKAANLDYGFL NLSNIDGMYKSIDDLGKLLNRKKEAKALRDDYEKFMKDYKEKHKNRKAPKVLILMGLPGS YVVATENSYVGSLAQLAGAENVYGGTDQQFITINTEDMLQKDPDIILRTAHALPDQVMEM FKKDFATNDIWKHFRAVKEGKVYDLNYKRFGMSAKFNYKEALDDLEEIFYEKN >gi|281297720|gb|ADDO01000035.1| GENE 7 7129 - 7275 122 48 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MAFIYLLLLIIGIITGIALIMAIASYLYYKKMENNLQTKRTEVYDEED >gi|281297720|gb|ADDO01000035.1| GENE 8 7278 - 8120 994 280 aa, chain - ## HITS:1 COG:no KEGG:Sgly_1485 NR:ns ## KEGG: Sgly_1485 # Name: not_defined # Def: NEAr transporter # Organism: S.glycolicus # Pathway: not_defined # 3 240 4 237 301 97 33.0 8e-19 MRKKLLISTLLLSLLFAFTSTFAYTQEIYKATPYYIHPVTGVIEDAGNNPGIGQGMTENV LNPQALVETTDDGRMFLSVRYSLANYIKNETFAVQNRGDKDFYSVPAEVTGQTKETKDYR FEIPSANVIVRATFFVGPMGRDVVFYYDISNPTPGNTDFKTLEEANGTTNSPQVSQVAQE DLGNQEVENISPKKNSASNLQNSKNLVPVQGGSSVGEILPAANAGGKIEVKPVNSKFSAG ALGYKHGLLTKDSPQIKKLYYSDDKDQKDQEEKEKNHWEK >gi|281297720|gb|ADDO01000035.1| GENE 9 8117 - 9583 1419 488 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282882430|ref|ZP_06291057.1| ## NR: gi|282882430|ref|ZP_06291057.1| hypothetical protein HMPREF0628_0376 [Peptoniphilus lacrimalis 315-B] hypothetical protein HMPREF0628_0376 [Peptoniphilus lacrimalis 315-B] # 1 488 1 488 488 779 100.0 0 MKEKKFILILLILSLLLITTYADDQNSVKKEEINLEDGYYKIPIKLWHAMEEKPSMGNKA LKQVAEIEVKNKEGNLYIGSDKMTYMNITASLINIYFQKEDGYYHKAQPGSFELEVPKEK AKRPQVFMTSLVNMDEMTKVYVDPKVEPMGDEPIRARIKLDFNNIEKIDLKDAELINKFN NGAKKEEFDKNQGGEVENKGLIVSYEPGCFEKDFSFYGNKLSGDRADKIAKQFNPLDQVN VFNIDFLGELDLIKGNEQSIQATREKIIPQKEFTLKLPLLKFKKEDNLSLYYFDEDKKEK LDFTFDGDYVSFKTKKTGDYVLVKSSDYSGKNINSPKIEMPKSSNSTKTYTLNQGKISRA KAFMASVKKPTAKKMSSTTKITNTQGLGKVEPIKSNSPSLEEIRKSVEAQGQVAKNNMMK EDNENQDLENEQANTKSNTRESKGIIFLVIIVILFINCLSYFIIRKYTKLILDIDEESRF LDKLRRKK >gi|281297720|gb|ADDO01000035.1| GENE 10 9839 - 10672 803 277 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282882428|ref|ZP_06291055.1| ## NR: gi|282882428|ref|ZP_06291055.1| hypothetical protein HMPREF0628_0377 [Peptoniphilus lacrimalis 315-B] hypothetical protein HMPREF0628_0377 [Peptoniphilus lacrimalis 315-B] # 1 277 1 277 277 487 100.0 1e-136 MYKLNLTKVQIEHLLFIKNKKENVTITQTARRFECSKVNSKKILDRMIVVGVLYKEENNY KLTDIGKDLADFYDKSLEKNKYLFEKLLNVGEETAEKVSIDLMTKENTELEESIDRKFNI LKRINDFEGPIAGTDLSEILPQGRYKLDFIIKKADEEINNSFIEDSMAIKGFETVAYLNI CKESYIELFAKTINKSQGGYLKKGIATKLFFYEKGQEIEIDSKNKTFIIPLSIIDYWSKL DELILISSLHFTIKAQVGINTHSNVTNFIFVVNLCSV >gi|281297720|gb|ADDO01000035.1| GENE 11 10681 - 12339 176 552 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 338 539 3 207 223 72 25 4e-12 MNKILEYKNLIGKLLKLVDPLKIQMLFAILFGSLGHIFASLLPSLGIYYLANIILKKQVN FNLVIISLLVLAILRALLKYSEQLLNHYIAFKTLAVIRDKVFKKLRAIGPQKIQGKDKGK LISILTSDIELLEVFYAHTISPVSIAFIHTLVFFIILWKFSPIYSLILLIFHIILGLIIP IITEKLAGTIGKKQRENYSVLNSLILESFKGIKEIVNFLQFENRYQEIKIAGRKLRRTEK ILNEKSAFNFILSGSIIIFGNLIFILTSYSLYRDAKVDFIGFVFPISIFISSFGPTSALS NLANNLILTLACGNRVINLLEEEPQIEYIKNGENLIYEELSLKDVNFSYDSNKLIENFNL KAEKNQIIGLEGKSGCGKSTIMKLIMRFYPINKGTISINNININKINTKNLRDNISYLSQ DVHLFKATIRDNLKIAKKDATDDELISACKKANIYDFIESLENGFDTEIFKDKFEISTGQ AQRLGLARIFLRNSNLYILDEPTANIDALNEGIILKSLYDQRKDKTIIISSHRGSSLRIA DTIIEVKRQTQS >gi|281297720|gb|ADDO01000035.1| GENE 12 12332 - 14041 1307 569 aa, chain - ## HITS:1 COG:HI0663m KEGG:ns NR:ns ## COG: HI0663m COG4988 # Protein_GI_number: 16273636 # Func_class: C Energy production and conversion; O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components # Organism: Haemophilus influenzae # 1 564 2 574 581 342 36.0 1e-93 MFNKKLFKELKEEKKMILVLVIIKVLQFLTNIFLVLIIGKFAQDLYYHIYDIRLFILEIM ALLIINIILLKINSSVSYKVSLRIKDKLRKRLIEKVFSFKLEYETKLTISQVMNLAVEGI EQLNIFYAQFLPQMFFALIGPLILFIILSFLNLKIALAMLLLVPLIPLAIFLVQKISKKV VKSYWKSYTNLSDVFIDFLYGLTTLTVFNADEDYNNKLNNLAEDFREKTMKLLFVQLNNI TVLDLVSYVGAGIGIILSLYYFQKNELTIFSAFSFILLSQEFFTPLRRLGSLFHVAMNGI SSANSLFEVLDIDDAKDYKGIIDANKLDITVENLSFSYGQKEVLENINMKFKSGNITALV GLSGSGKSTMAKIICGALRDFKGNIFYNNKKDISSDSLAKNIIYIDNNPYFFKQTLAYNL KIAKEDASDEELYQALDDVGLLEYFKNLKGLETFIDSWGNNLSGGQKQRLALARAILKKP KVLILDEAISNIDRQSEALILKLLEKIRNQTNIIIISHRLYTVKSADYIYFLDDKKIAEE GDFARIMEGKLFRDLYSYQEKLEKWGLNE >gi|281297720|gb|ADDO01000035.1| GENE 13 14044 - 14406 70 120 aa, chain - ## HITS:1 COG:SA0161 KEGG:ns NR:ns ## COG: SA0161 COG2832 # Protein_GI_number: 15925870 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 118 1 118 127 80 42.0 8e-16 MKILFLILGLFFLALGIAGIYLPLLPATPFLLLATFFFSKSSKKFNDYFISTNIYKEFIE PIKSKRAITKEKKFKILAMVTVFIGISFYFVNNLHARICLAFVLIFHYLYFLFRVKTVVD >gi|281297720|gb|ADDO01000035.1| GENE 14 14822 - 15376 487 184 aa, chain - ## HITS:1 COG:no KEGG:Amet_3673 NR:ns ## KEGG: Amet_3673 # Name: not_defined # Def: hypothetical protein # Organism: A.metalliredigens # Pathway: not_defined # 1 183 1 183 183 129 42.0 6e-29 MRLSERNGVFEDFFEHRSYLIMQYSQGDLNKKEFIKRNFDYLVLRNMTPYIKVDSYEKGM YNYQYFNVMAKYYKALSRDVYNTKKHQKYYNYYLNLANKFYHEKDKSVLSILKIEEFKDM DAYYIKCQSKALQNLLYEIVLNNKKEAIFHSKAKWLLNVLIEEKIFNNVTKKSIIDHYIN EKYY >gi|281297720|gb|ADDO01000035.1| GENE 15 15385 - 15468 74 27 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNQKFITRVLVAIIVLSMLIPIAFSFR >gi|281297720|gb|ADDO01000035.1| GENE 16 15478 - 15903 567 141 aa, chain - ## HITS:1 COG:no KEGG:Apre_0891 NR:ns ## KEGG: Apre_0891 # Name: not_defined # Def: hypothetical protein # Organism: A.prevotii # Pathway: not_defined # 1 139 1 139 142 112 41.0 5e-24 MIKYILGAKGSGKTRWLIENANEDMKKDDSNIAFVEVDDDHIFSLDYNVRLINATDYRLN NVESFYGFICGLLAMDYDLHKIYIDGIYKVLHLNIEDLEYMLSKLSKIPDIEQKEIYINI DYTMEDMSEVLAKNAYEVKAM >gi|281297720|gb|ADDO01000035.1| GENE 17 15908 - 16807 883 299 aa, chain - ## HITS:1 COG:TM0515 KEGG:ns NR:ns ## COG: TM0515 COG1242 # Protein_GI_number: 15643281 # Func_class: R General function prediction only # Function: Predicted Fe-S oxidoreductase # Organism: Thermotoga maritima # 1 274 1 275 303 247 44.0 2e-65 MTYNTYSDFLKRKFGKKVYKLPIKLNLTCPNRDGTCGYGGCIFCGEEGGSFENTDGSIKE QLSQAKEIMKRKYKAEKFISYFQNFTNTYMDIESFKKIINESLVEDVVGVSISTRPDCLY KEHLEFLEQVNKDYMVTLEIGLQTVNYHTLKIINRGHGLADFIDGVLRAKKHGLRVCVHV LIGLPWDDDLDVYECAKILSALSVDEVKIHALYIVKNTLMGKLYEDGKIKTISLEDYKRK VILFLRSLKSDIIVERIIGRAPEENSLFCNWNTSWWKIRDDIVKEMKEKNLTQGDMRRI >gi|281297720|gb|ADDO01000035.1| GENE 18 16797 - 17243 551 148 aa, chain - ## HITS:1 COG:alr2503 KEGG:ns NR:ns ## COG: alr2503 COG1225 # Protein_GI_number: 17229995 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peroxiredoxin # Organism: Nostoc sp. PCC 7120 # 3 145 13 155 159 130 41.0 7e-31 MNNFSLESVDGKIKNLDDYKGKTLVLYFYPKDSTKGCTIEAMEFSDLKDEFDKLGAVVVG ISKDKIKSHKNFIEKDDLKVELLSDPDRKVAESFKVLKAGKMCGKDVIKTVRSTFIFNKD GKLVKEFRDVKPQGHASDVLNYLKENDL >gi|281297720|gb|ADDO01000035.1| GENE 19 17236 - 17565 649 109 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282882404|ref|ZP_06291031.1| ## NR: gi|282882404|ref|ZP_06291031.1| conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] conserved hypothetical protein [Peptoniphilus sp. oral taxon 836 str. F0141] conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] conserved hypothetical protein [Peptoniphilus sp. oral taxon 836 str. F0141] # 1 109 1 109 109 142 100.0 9e-33 MAENEKNCGCSCGCSHEEGHQEGYDIINLSLDDDREVSYIILGIFECDDEEYIALIPEDE KEGEDVYLFRYKESGEDEVELDEIENEEEFDRVSKKFDQLFIEEDDFNE >gi|281297720|gb|ADDO01000035.1| GENE 20 17593 - 18924 1022 443 aa, chain - ## HITS:1 COG:no KEGG:CLOST_2059 NR:ns ## KEGG: CLOST_2059 # Name: not_defined # Def: hypothetical protein # Organism: C.sticklandii # Pathway: not_defined # 1 406 1 407 448 279 39.0 2e-73 MKLELFKYIDDVLDLFEYHRQELVSINKEVRNYFSDVLKDDERALNLSTRIKTPQSLREK LIRRNYYIKYPTPFEGFKKVPDLIGLRIECRFIKDEKEIYQKIIDEFRIYCGKGYYASNI NKNIRLNLEDIQPQVLNNGFKIYKLDGLYKNSKTSYSFELQIKSLVNLFWGEIDHKILYK NYNYMIVEDFFRDIMHSIIDNLFMVDKQLMILYDHVTNSDASGKDPAEKQLKVLLSKIIH DVFINKIYGELGFVFNIKASTDIIVEFIFMKLKKNKDNSYGEDFISLINRINEISTLDMN LEEYINVDEKPKFYDSFTRNIGNLILASLNKDFEWNIFFKIITTIDRESDNQIFEDFIHF VRYQYTLLILKLFENFDLSEDDKRDIENFILNLVIDKFKNNTTLEFLMVKSINKINSILE SLKFSEIEGKEDLKELFKKEYKF >gi|281297720|gb|ADDO01000035.1| GENE 21 18933 - 19682 855 249 aa, chain - ## HITS:1 COG:CAC0279 KEGG:ns NR:ns ## COG: CAC0279 COG0760 # Protein_GI_number: 15893571 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Parvulin-like peptidyl-prolyl isomerase # Organism: Clostridium acetobutylicum # 3 246 2 245 247 158 38.0 7e-39 MDKNKILAEVNGKKITGEDYNIFINSINPKLREHLVNSDQNKEVIEELIHHELIYQDAIE NGKDKEEEFQKVLDQAKKSLLLNYTLGKLLSNIEVTEKEIEDFYNNHKEHFTKDQTVRAS HILVDDLKKAEEIYNRIKDGADFSKEAKNNSTCPSKENGGDLGIFSKGQMVKEFEDACFN MEVGEVSKPVKTQFGYHIIKLVEKNKAQEMTLEESRDHIIEDIRRQKEQEIYKDKISSLR EKSQIKYMD >gi|281297720|gb|ADDO01000035.1| GENE 22 19731 - 20420 615 229 aa, chain - ## HITS:1 COG:no KEGG:TepRe1_2353 NR:ns ## KEGG: TepRe1_2353 # Name: not_defined # Def: acyl-ACP thioesterase # Organism: Tepidanaerobacter_Re1 # Pathway: not_defined # 2 195 9 207 249 75 27.0 2e-12 MQKYKKHYKIEKNLSLRDLLEIFMQTSLEDSADKILVKEYFKDNNLSWMIYKWKVQIYGN ITKTDYISKTWPSYFDKISTYREFTLERDGHILAKATAIYVIVDMKNKKLIEIPQIVKDS YQLIQERNFEKIEKASIKGDIYCEKNFYVEKEQIDLNGHVHNTSYIFWLEKCFENNSMIK KLKVFTITYMKEIHYPNKVNLLIYKDGENYNFSIKTNDFNAKGKCIFND >gi|281297720|gb|ADDO01000035.1| GENE 23 20662 - 22482 2057 606 aa, chain + ## HITS:1 COG:CAC0158 KEGG:ns NR:ns ## COG: CAC0158 COG0449 # Protein_GI_number: 15893453 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains # Organism: Clostridium acetobutylicum # 1 606 1 608 608 607 50.0 1e-173 MCGIVGYVGKLNATDIIIKGLSALEYRGYDSSGISILKDGRIFTLKRPGRISNLKEALKE NPIEGNVGIGHVRWATHGVPNEINAHPHNSMNNTISLVHNGIIENYLELKNSLLEEGYNF KSQTDTEVVSNLIEKFYKGNLLDAVNKTLSLIRGSYAFGIICSKEKDRLIACKNSSPLVG GIFDDGIILASDITSLISYTDKIIYFQDGDVIDINGKDYKIYNNGKEVNREIKTVNMSMD AASKEGYPHFLLKEIHEQPKVLEEVLSVRLKDGKINLEQGDFSLDQLKNFNKIYAVACGT AYHACLGIKYFMEKILQVPVICEVASEFKYENYFIDKNSLMIVVSQSGETADTISAINKA KSVGATTLSITNVVGSTVSRLTDRVMYCYCGPEISVASTKAYTSQLLAGFLLGLDMAFKL EKISKDELDNYLNHLKEIPQKISQILKNEENYKLIANSIKNAKSMFYTGRGLDYVTAKEG ALKLKEISYIHAEAFQTGELKHGPLALIEKDTPVISIATQKHTMEKTASNNEELLARGAK VFAVGFVGNKLLESCAAQFIEIPETLDLYAPLLAIIPLQVIAYYVSSLLGNDVDKPRNLA KSVTVE >gi|281297720|gb|ADDO01000035.1| GENE 24 22795 - 24033 1248 412 aa, chain + ## HITS:1 COG:FN1486 KEGG:ns NR:ns ## COG: FN1486 COG1253 # Protein_GI_number: 19704818 # Func_class: R General function prediction only # Function: Hemolysins and related proteins containing CBS domains # Organism: Fusobacterium nucleatum # 19 410 20 418 426 199 33.0 6e-51 MDYIFLFLSLIFLYLSYKFTLIENAFLALNSIKLKKMEEEETENFELIQKLAKDDELYPT TLVVDYFSNSLCAIFASLFFYEHFKIIGLILGVLISTILIITLGESFPRNYAKKFYGKIC PANAKLMSFTIVFLRPLSYLILKISQVFLKLTGSFDINEPLITEEDLYDAMNRGKAEGLL DHNESLMIENVMDFRDSYAKDIMTPRTDIVAIDIESSYSEIIDLICKENFSRMPVYEDNI DNIIGILNVKDLFMMNKHKSLKENKSFFKKPYFTYEYKEVSSLFSDMRANKISVAIVADE YGGTTGMITIEDLIEKIVGAINDEYDNEDDEDIIKLGPNKYLVDGAMNLDDLNQLTGLEL ESTEFDSIGGFIIEKIDRFPKKNEVIILDNLKFTVKKTSKNRIDKVLLEIKK >gi|281297720|gb|ADDO01000035.1| GENE 25 24033 - 24524 523 163 aa, chain + ## HITS:1 COG:BS_yxjI KEGG:ns NR:ns ## COG: BS_yxjI COG4894 # Protein_GI_number: 16080945 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 1 161 1 160 162 75 27.0 4e-14 MEKLYIKQKVFKITDHYAVIDENNNEIYYVDQDFKLIGNTVHVSDRNYNELFTINKVILT WLPKYNIEFTDGRLIEIKENFAFFKKSLEISSADFDLDVKGDYLSLNFKIFNNNDLIGEV EKAWLSWGDTFELTVYDESYRDLVVALTIAVDDILDDEAKSRH >gi|281297720|gb|ADDO01000035.1| GENE 26 24587 - 24943 303 118 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282882424|ref|ZP_06291051.1| ## NR: gi|282882424|ref|ZP_06291051.1| conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] hypothetical protein HMPREF9131_1081 [Peptoniphilus sp. oral taxon 836 str. F0141] conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] hypothetical protein HMPREF9131_1081 [Peptoniphilus sp. oral taxon 836 str. F0141] # 1 118 1 118 118 195 100.0 7e-49 MKEIVFDFNPLGNFSLSAEVYELYYSKKYNKKIYFYIRDGRHYKKVENIKDLKKSTNRVI TFIDLGDRVEKIPFDEKIRVKPIDEDYDEDPLLIEIVNELGQEASWKNSKIKVVEIKE >gi|281297720|gb|ADDO01000035.1| GENE 27 25169 - 26137 1316 322 aa, chain + ## HITS:1 COG:BMEII0898 KEGG:ns NR:ns ## COG: BMEII0898 COG3191 # Protein_GI_number: 17989243 # Func_class: E Amino acid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: L-aminopeptidase/D-esterase # Organism: Brucella melitensis # 4 305 7 311 335 257 48.0 2e-68 MYQGFLTDVDGVNLGHYQDKKAATGVSVAIFPEGATCGVDVRGSAPGTRETDLLKAENLV EKVHGVLLSGGSSYGLSAASGIIKYLEEKNIGMDVSVCKVPIIVGAVIFDLGIGNPFVRP DHEMGYKASLNISDNDKSLGNIGAGCGASVGKILGNDYAMKSGIGQSSLKVGDLLVSSIT VLNAFGDIFDYEKSIQIAGCYDRKNYNFLSTEDLYKNMNSDYNAFNRATNTTISLVTTNA LLTKANCNKVSQMAHDGYARAINPVHTMFDGDTIFTCSTGKVKADVSLVGMLAAKSIARS IANAIYCSDASYGLISYKEISK >gi|281297720|gb|ADDO01000035.1| GENE 28 26184 - 26945 623 253 aa, chain + ## HITS:1 COG:CAC0331 KEGG:ns NR:ns ## COG: CAC0331 COG4684 # Protein_GI_number: 15893623 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Clostridium acetobutylicum # 7 123 4 118 192 97 51.0 2e-20 MNNTLRKDGLNARKLILVSVLGAITIVLGMTPLGFIPLGVINATTMHIPVIIASIVEGPI VGALVGLIFGISSLLNALLKNASPVAFVFYNPLISIFPRVLIGITSYYAWSLLKNLKTDK IKILSRIIWSVISIFLAFQCINGFSNMSQLNKICMGIFLAASLAMTIYSFLKIDDNFPVV VGAFIGSMTNTIFVLGGIYLFYAKRYMEAMNMPLENAKAAILGVSITSGIPEAIISVIIT SAVVKALKLSKEF >gi|281297720|gb|ADDO01000035.1| GENE 29 26964 - 27752 1039 262 aa, chain + ## HITS:1 COG:lin0253 KEGG:ns NR:ns ## COG: lin0253 COG1521 # Protein_GI_number: 16799330 # Func_class: K Transcription # Function: Putative transcriptional regulator, homolog of Bvg accessory factor # Organism: Listeria innocua # 1 262 1 259 259 164 33.0 2e-40 MLLAANINNKFIEFGIFDDEKLIGNFKIKTDINRSIDELSFLIKNLIMERNIKLQDIDDV IGSNVVPELTIFFEKLIKNLFNKNVIFVGTGIKTGLDIKCENPKEVGSDRITMAVAGLSS TKSPLLIVNMSHVTTIDMINKDNKFIGGLIFPGIDLCQEVLKKESAKLPNVEIVAQEKII GNSTRSAMISGLYRSYINACKGIISDIKNSNDLNNDKINIVLTGDFSELLDDVENSNIHR DKFLIFEGLKIIYNLNKNNKNK >gi|281297720|gb|ADDO01000035.1| GENE 30 27863 - 28675 718 270 aa, chain - ## HITS:1 COG:aq_325 KEGG:ns NR:ns ## COG: aq_325 COG0796 # Protein_GI_number: 15605845 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glutamate racemase # Organism: Aquifex aeolicus # 6 268 3 243 254 174 36.0 2e-43 MDNRSIGFFDSGVGGLSVLKVSLGEIPRESYIYYGDTLRMPYGVKSKEDIERYTCQAMEF FRSKNVKMAVIACNTATCYGIKKARELFDFPIFGVVEPAVKESLHKSKSKKVALLATEGT VNSGVYDKFFESYSSNIYIKEIGCPDLVLAIENGDLRDEVIVPVINKYLDKFEDFEYDAL ILGCTHFPIVENTFKRILAKFDRKVQLVDPAEITINELKEYLENHDMLGDHDEESIDFYV SSHKEKFKSTLEKLISVNDYKISLSEKVLD >gi|281297720|gb|ADDO01000035.1| GENE 31 28800 - 30905 2578 701 aa, chain - ## HITS:1 COG:BH2945 KEGG:ns NR:ns ## COG: BH2945 COG4666 # Protein_GI_number: 15615507 # Func_class: R General function prediction only # Function: TRAP-type uncharacterized transport system, fused permease components # Organism: Bacillus halodurans # 46 701 8 651 656 502 45.0 1e-142 MVDKNLENKNENLNEEIKIDNAKEKDKDVNEVNNNVDHGELGDLTDTKKATQNVDELLEK YDLDSSKLRKLSGKTALLVTVVAILMSAFHLFTAARGTLLAMQQRSLHLIFAFSLGFALY PGFKKSSKNKIDIPDWILIILSIVVWGYIFTNIEYIALKGGKMSTIDEVFGILAILLTLE VTRRVVGPELPIVTIVFLLFAYFGRHMPGILNHRGFGITRIVSHMYMTTEGIMGTPLGVS STFVFMFILFGSFLDKTGVGQFFIDFAYALTGSTRSGPAMTSVVSSGLMGSISGSSVANT VTTGAFTIPLMKKVGYAPYYAGAVEATSSTGGQIMPPVMGAAAFIMADFTGFQYIEIVKA AVIPAVLYYIAVGTMVHLEACKIGLKGLPREQLPKISNIILKQGYLLFPLIAIVYMLVKQ QPPMNAALAGIVVGVVVAFIAALVKKDGSFTYKSVLQAMESGAKGALGVACACACAGMIV GVVTLTGFGLKIAEVIVKIAQGRLIPTLILTMISSIILGMGLPTTAKYIVLATMAVPAIT KLGVNLMCAHLFILYFGVVADVTPPVALAAYAGAGIAGANSMKTGFQAFKLALGAFIIPY IFCINPHLVMIDKVVGTTISWLPITAALPNIATALIGTMCLAGCVEGYLFGRLRPWQRII LIIAALGLLDPKTLTDIIGLCALAFIFISQKLLNKNKAQAA >gi|281297720|gb|ADDO01000035.1| GENE 32 30895 - 31425 319 176 aa, chain - ## HITS:1 COG:no KEGG:Clos_0677 NR:ns ## KEGG: Clos_0677 # Name: not_defined # Def: hypothetical protein # Organism: A.oremlandii # Pathway: not_defined # 16 170 29 183 188 120 43.0 2e-26 MKLNNKKIGRKIFLPILFILIAIILCLSLIKINVLFIRDNFTKDLKKVEYIKKDSLFGII YTHSVMLTETSEWYKAKGDKLILMEERYNSQGAGLPVNLIYKFKHEKGGDFVLYDINEPF DSFIYRTGAVRANHRLKIGNKLEYFLEFSEPREALEFSTKRISIFNYLLRRCQVGR >gi|281297720|gb|ADDO01000035.1| GENE 33 31425 - 32486 1527 353 aa, chain - ## HITS:1 COG:AF0635 KEGG:ns NR:ns ## COG: AF0635 COG2358 # Protein_GI_number: 11498243 # Func_class: R General function prediction only # Function: TRAP-type uncharacterized transport system, periplasmic component # Organism: Archaeoglobus fulgidus # 65 350 41 325 330 237 43.0 3e-62 MTKKRLFALVMTLVMVALSFTACGGTNKADNKANKENATATENAAASSDATIKAEGTQET EGGYISIATGGTGGTYYPLGGALSTILNGANLGYTATAQATGASVENLELINKGDAEIAL VQNDVSYYAVNGKEHFEGNKLENIRGLCTLYPEIVQIIASNDSGIESVADMKGKKVAVGD PGSGVEVNAKQILELYGLTYDDLGKCDHLSFSESADQIKSGQIDAAFVVAAIPSSAVTEL ATTYDVHLVPIAADKADELIKKYPYYVHMDVNPKEYRNQKDNVSVVAVQSMLVVSSEMAD ADAYNICKLLFDNLDVMKESHARGGDISLDTALDGMSIDLHPGAQKFFDEVKK >gi|281297720|gb|ADDO01000035.1| GENE 34 32867 - 34189 1636 440 aa, chain - ## HITS:1 COG:CAC0278 KEGG:ns NR:ns ## COG: CAC0278 COG0527 # Protein_GI_number: 15893570 # Func_class: E Amino acid transport and metabolism # Function: Aspartokinases # Organism: Clostridium acetobutylicum # 1 438 1 436 437 447 54.0 1e-125 MKIIVSKFGGSSLGDSNTFKKVFQIVKADENRKFIVASAPGKANASDSKITDLLYLSYDL ASNKINYSEILDSINMKYREIVNNLDITFDIDSALCNLDKDLREGKSREYIASRGEFINA QILASFLGYEFVDAKNLILFDDKGFFLEEKSYDEIYKLRESGKSYVIPGFYGSDKDGNIR TFSRGGGDLTGSIIAAGLKSDLYENWTDVSGFMTCDPKIVKNPRHIDILTYRELRELSYA GASILHEEAILPVSKAGIPVIIKNTFKPDDKGTMIVPDEKASLDKNTSGVTGIAGRKNFT VINIEKTKMNNEKGFHRKLMSVMEVNNVIIEHMPSSIDSVSLIISDKYLTGGIDSIISEI KTFLRPDKVKVTKGIALISVVGRGMIKHIGVSAKLFNALAKENINIQMIIQGSSEMNIIV GIDEKDFENAIKSIYHAFLD >gi|281297720|gb|ADDO01000035.1| GENE 35 34934 - 36121 1420 395 aa, chain + ## HITS:1 COG:no KEGG:CTC01949 NR:ns ## KEGG: CTC01949 # Name: not_defined # Def: hypothetical protein # Organism: C.tetani # Pathway: not_defined # 1 395 1 393 393 503 63.0 1e-141 MTRYVGTVVRGIRTPIVKSGDELVSIVRDSLKLATDAENIQIRDRDVVAVTESLVARAQN NYVNVDQIAKDLNAKFDKEIGIVFPILSRNRFSTILRAIAKTGKKIHILFSYPSDEVGNA LMSPDLLIDKKINPYSDVLEEKDYRRIFGPVVKHQFTGIDYVSLYKDICKDNDCEIHFSN NPVTILKYTDEALICSTHTRFNIKRILKDAGAKVCLALDDIMTESIDGSGFNEQFGLLGS NYASDSRLKLFPRNGQVFVDNLQKTLKDLYGKEIEVMIYGDGAFKDPVGKIWELADPVVS PAHTKGLVGQPNELKIKYIADTDLKDMNTEEATKAMKDKISHKNANLVGTNETLGTTPRR ITDLLGSLCDLTSGSGDKGTPVILIQGYFDNFASE Prediction of potential genes in microbial genomes Time: Mon Jul 18 12:23:51 2011 Seq name: gi|281297714|gb|ADDO01000036.1| Peptoniphilus lacrimalis 315-B contig00062, whole genome shotgun sequence Length of sequence - 1945 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 2, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 586 444 ## COG3666 Transposase and inactivated derivatives + Term 716 - 766 15.1 - Term 846 - 884 2.2 2 2 Op 1 . - CDS 903 - 1061 183 ## gi|282882440|ref|ZP_06291066.1| conserved domain protein 3 2 Op 2 . - CDS 1072 - 1284 333 ## gi|282882436|ref|ZP_06291062.1| conserved hypothetical protein 4 2 Op 3 . - CDS 1299 - 1520 463 ## gi|282882439|ref|ZP_06291065.1| conserved hypothetical protein - Prom 1635 - 1694 10.3 Predicted protein(s) >gi|281297714|gb|ADDO01000036.1| GENE 1 2 - 586 444 194 aa, chain + ## HITS:1 COG:CAC0656 KEGG:ns NR:ns ## COG: CAC0656 COG3666 # Protein_GI_number: 15893944 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Clostridium acetobutylicum # 17 187 1 179 189 100 38.0 1e-21 LNKIVADAGYESEENYVFLAENNLTSYIKPSNYEKSKTRKYKKEQEIKKSLKYDEKQDKY ISQEGKEFIRCNDRYRKRKSGYVTTTKVYRCFDWNKEGQKTKGIYISETFQKYREESLKN IKSDQGIEERINRSIQAEGAFSKIKSGLNYNRFHHRGKENIKSEICLLSIGLNINKLTSK IENKNLEIIKYKAS >gi|281297714|gb|ADDO01000036.1| GENE 2 903 - 1061 183 52 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282882440|ref|ZP_06291066.1| ## NR: gi|282882440|ref|ZP_06291066.1| conserved domain protein [Peptoniphilus lacrimalis 315-B] conserved hypothetical protein [Peptoniphilus sp. oral taxon 836 str. F0141] conserved domain protein [Peptoniphilus lacrimalis 315-B] conserved hypothetical protein [Peptoniphilus sp. oral taxon 836 str. F0141] # 2 52 1 51 51 81 100.0 2e-14 MMDELLQNIANIGFPIALSAYLLVRLESRMEELKTSIINLTKAVEEFSIKRD >gi|281297714|gb|ADDO01000036.1| GENE 3 1072 - 1284 333 70 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282882436|ref|ZP_06291062.1| ## NR: gi|282882436|ref|ZP_06291062.1| conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] # 1 70 1 70 70 105 100.0 8e-22 MSKSLRLEFEDQEENKATISITEPKDGLTKAEAKEFGDFLVSNSIVRGKKAKLNKFDKAF IVTRTEVELV >gi|281297714|gb|ADDO01000036.1| GENE 4 1299 - 1520 463 73 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282882439|ref|ZP_06291065.1| ## NR: gi|282882439|ref|ZP_06291065.1| conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] # 1 73 1 73 73 95 100.0 1e-18 MAKVNVSRKLKTKLNAGLGKNGKESYKTISLDRLEENVSTENALKVGEFIGKIVDKKVKS VTRVSEEEITSEL Prediction of potential genes in microbial genomes Time: Mon Jul 18 12:24:06 2011 Seq name: gi|281297711|gb|ADDO01000037.1| Peptoniphilus lacrimalis 315-B contig00054, whole genome shotgun sequence Length of sequence - 453 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 3 - 155 219 ## Apre_1831 addiction module antitoxin, RelB/DinJ family 2 1 Op 2 . + CDS 145 - 423 302 ## COG3041 Uncharacterized protein conserved in bacteria Predicted protein(s) >gi|281297711|gb|ADDO01000037.1| GENE 1 3 - 155 219 50 aa, chain + ## HITS:1 COG:no KEGG:Apre_1831 NR:ns ## KEGG: Apre_1831 # Name: not_defined # Def: addiction module antitoxin, RelB/DinJ family # Organism: A.prevotii # Pathway: not_defined # 1 50 41 90 90 65 70.0 7e-10 IRKNGIPFDLKLNVPNDETLKAIKEARKIAKDKNVQSYDSIEELRKDLEI >gi|281297711|gb|ADDO01000037.1| GENE 2 145 - 423 302 92 aa, chain + ## HITS:1 COG:VCA0323 KEGG:ns NR:ns ## COG: VCA0323 COG3041 # Protein_GI_number: 15601088 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Vibrio cholerae # 3 91 11 98 98 69 46.0 1e-12 MKYKIKYTNRFKKDLKLLKKQGKDINKLFYIIEKIAKGETLEDKYKDHSLNGIYKKTREC HVETDLLLIYEKFEDILVLTLVRTGSHSDLFK Prediction of potential genes in microbial genomes Time: Mon Jul 18 12:24:08 2011 Seq name: gi|281297709|gb|ADDO01000038.1| Peptoniphilus lacrimalis 315-B contig00067, whole genome shotgun sequence Length of sequence - 628 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 624 498 ## COG0732 Restriction endonuclease S subunits Predicted protein(s) >gi|281297709|gb|ADDO01000038.1| GENE 1 1 - 624 498 207 aa, chain + ## HITS:1 COG:PM1538 KEGG:ns NR:ns ## COG: PM1538 COG0732 # Protein_GI_number: 15603403 # Func_class: V Defense mechanisms # Function: Restriction endonuclease S subunits # Organism: Pasteurella multocida # 31 183 3 151 435 123 41.0 2e-28 KALYKDWFFDFSPFSTEGNLPDSWRIGTVGDIIQFHDSKRVPLSGAERDKMEKIYPYYGA TSLMDYVDNYLFDGIYLLLGEDGTVVDNLGFPILQYVYGQFWVNNHAHIITGKEDFSVEE LYLLFRLTNIKSIVTGAVQQKVSQQNLKKVPAIIPSKESLRTFDDLIQPIFAQIRNLRDE NTRLADLRDTLLPRLMSGELDVSKIEI Prediction of potential genes in microbial genomes Time: Mon Jul 18 12:24:09 2011 Seq name: gi|281297707|gb|ADDO01000039.1| Peptoniphilus lacrimalis 315-B contig00068, whole genome shotgun sequence Length of sequence - 287 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 237 422 ## gi|282882447|ref|ZP_06291070.1| putative cylicin-2 Predicted protein(s) >gi|281297707|gb|ADDO01000039.1| GENE 1 1 - 237 422 78 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282882447|ref|ZP_06291070.1| ## NR: gi|282882447|ref|ZP_06291070.1| putative cylicin-2 [Peptoniphilus lacrimalis 315-B] putative cylicin-2 [Peptoniphilus lacrimalis 315-B] # 1 78 1 78 78 124 100.0 3e-27 KDGSEVGKDAPLPEGWHRVTVKQDTESIKKDTVTEKYYAVAPKDDAKGQTGKLSKDAFPS LENKAKDGYEKPSLVQRC Prediction of potential genes in microbial genomes Time: Mon Jul 18 12:24:15 2011 Seq name: gi|281297706|gb|ADDO01000040.1| Peptoniphilus lacrimalis 315-B contig00002, whole genome shotgun sequence Length of sequence - 233 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Mon Jul 18 12:27:39 2011 Seq name: gi|281297591|gb|ADDO01000041.1| Peptoniphilus lacrimalis 315-B contig00017, whole genome shotgun sequence Length of sequence - 89310 bp Number of predicted genes - 120, with homology - 112 Number of transcription units - 32, operones - 22 average op.length - 5.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 118 126 ## - Prom 351 - 410 11.3 - Term 469 - 506 0.0 2 2 Op 1 . - CDS 622 - 1095 567 ## COG5632 N-acetylmuramoyl-L-alanine amidase 3 2 Op 2 . - CDS 1082 - 1702 664 ## ELI_2387 ECF subfamily RNA polymerase sigma-24 factor - Prom 1750 - 1809 12.1 + Prom 1756 - 1815 10.1 4 3 Op 1 17/0.000 + CDS 1892 - 2860 1131 ## COG1702 Phosphate starvation-inducible protein PhoH, predicted ATPase 5 3 Op 2 11/0.000 + CDS 2861 - 3301 561 ## COG0319 Predicted metal-dependent hydrolase + Prom 3306 - 3365 5.3 6 3 Op 3 3/0.000 + CDS 3429 - 4013 550 ## COG0818 Diacylglycerol kinase 7 3 Op 4 6/0.000 + CDS 4013 - 4411 475 ## COG0295 Cytidine deaminase 8 3 Op 5 16/0.000 + CDS 4408 - 5301 944 ## COG1159 GTPase 9 3 Op 6 3/0.000 + CDS 5288 - 5980 469 ## COG1381 Recombinational DNA repair protein (RecF pathway) 10 3 Op 7 19/0.000 + CDS 5993 - 6874 1110 ## COG0752 Glycyl-tRNA synthetase, alpha subunit 11 3 Op 8 2/0.000 + CDS 6867 - 8945 2326 ## COG0751 Glycyl-tRNA synthetase, beta subunit 12 3 Op 9 4/0.000 + CDS 8958 - 9584 617 ## COG0517 FOG: CBS domain 13 3 Op 10 . + CDS 9593 - 10420 1014 ## COG1806 Uncharacterized protein conserved in bacteria 14 3 Op 11 3/0.000 + CDS 10423 - 11451 867 ## COG0232 dGTP triphosphohydrolase 15 3 Op 12 31/0.000 + CDS 11435 - 13237 1285 ## COG0358 DNA primase (bacterial type) 16 3 Op 13 5/0.000 + CDS 13230 - 14315 1530 ## COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) 17 3 Op 14 9/0.000 + CDS 14312 - 15004 580 ## COG2384 Predicted SAM-dependent methyltransferase 18 3 Op 15 . + CDS 14988 - 15758 748 ## COG0327 Uncharacterized conserved protein 19 3 Op 16 . + CDS 15788 - 15922 180 ## + Prom 16146 - 16205 11.0 20 4 Tu 1 . + CDS 16237 - 17385 227 ## PROTEIN SUPPORTED gi|167856514|ref|ZP_02479226.1| 50S ribosomal protein L1 + Term 17403 - 17437 2.0 + Prom 17441 - 17500 10.4 21 5 Op 1 24/0.000 + CDS 17543 - 19075 182 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 22 5 Op 2 26/0.000 + CDS 19062 - 20192 1075 ## COG4603 ABC-type uncharacterized transport system, permease component 23 5 Op 3 . + CDS 20185 - 21144 1208 ## COG1079 Uncharacterized ABC-type transport system, permease component 24 5 Op 4 . + CDS 21157 - 22218 1490 ## COG0006 Xaa-Pro aminopeptidase + Term 22256 - 22292 6.6 - Term 22244 - 22278 6.2 25 6 Op 1 . - CDS 22285 - 23211 1137 ## EUBREC_2028 alkyl hydroperoxide reductase 26 6 Op 2 . - CDS 23201 - 24133 590 ## COG0348 Polyferredoxin - Prom 24291 - 24350 12.2 + Prom 24267 - 24326 9.4 27 7 Op 1 40/0.000 + CDS 24359 - 25030 763 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 28 7 Op 2 . + CDS 25034 - 26170 900 ## COG0642 Signal transduction histidine kinase 29 7 Op 3 . + CDS 26248 - 27483 807 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 + Prom 27515 - 27574 5.5 30 8 Op 1 . + CDS 27601 - 28146 397 ## PROTEIN SUPPORTED gi|167856598|ref|ZP_02479300.1| 50S ribosomal protein L35 31 8 Op 2 . + CDS 28159 - 28350 231 ## PROTEIN SUPPORTED gi|169824393|ref|YP_001692004.1| 50S ribosomal protein L35 32 8 Op 3 . + CDS 28363 - 28713 451 ## PROTEIN SUPPORTED gi|227485252|ref|ZP_03915568.1| ribosomal protein L20 + Term 28714 - 28746 2.0 + Prom 28725 - 28784 11.2 33 9 Op 1 . + CDS 28812 - 29297 869 ## CLOST_1772 ubiquitin-associated-domain-containing protein 34 9 Op 2 . + CDS 29331 - 30074 173 ## PROTEIN SUPPORTED gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 35 9 Op 3 . + CDS 30098 - 30760 598 ## CLOST_1122 hypothetical protein + Term 30973 - 31013 8.1 + Prom 30786 - 30845 11.5 36 10 Tu 1 . + CDS 31024 - 32934 2298 ## COG0441 Threonyl-tRNA synthetase + Term 32947 - 32994 4.1 + Prom 33431 - 33490 5.7 37 11 Op 1 32/0.000 + CDS 33516 - 34520 1035 ## COG1135 ABC-type metal ion transport system, ATPase component 38 11 Op 2 22/0.000 + CDS 34521 - 35174 869 ## COG2011 ABC-type metal ion transport system, permease component 39 11 Op 3 . + CDS 35216 - 36115 1275 ## COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen + Term 36153 - 36189 2.0 40 12 Tu 1 . - CDS 36328 - 36630 137 ## - Prom 36667 - 36726 4.2 + Prom 36447 - 36506 8.5 41 13 Tu 1 . + CDS 36632 - 37975 1257 ## COG1114 Branched-chain amino acid permeases + Term 37985 - 38028 7.2 + Prom 38012 - 38071 11.7 42 14 Tu 1 . + CDS 38146 - 38370 367 ## gi|282882475|ref|ZP_06291096.1| hypothetical protein HMPREF0628_0272 + Term 38393 - 38421 -0.9 + Prom 38378 - 38437 10.6 43 15 Op 1 . + CDS 38546 - 39211 616 ## gi|282882530|ref|ZP_06291151.1| conserved hypothetical protein + Term 39226 - 39260 2.0 44 15 Op 2 . + CDS 39286 - 40854 1637 ## COG2509 Uncharacterized FAD-dependent dehydrogenases 45 15 Op 3 . + CDS 40856 - 41320 477 ## COG0219 Predicted rRNA methylase (SpoU class) 46 15 Op 4 . + CDS 41331 - 43628 1715 ## COG1199 Rad3-related DNA helicases + Term 43735 - 43798 9.7 + Prom 43683 - 43742 8.7 47 16 Op 1 . + CDS 43838 - 44869 620 ## gi|282882562|ref|ZP_06291183.1| hypothetical protein HMPREF0628_0277 + Prom 44873 - 44932 3.1 48 16 Op 2 . + CDS 44969 - 45118 204 ## PROTEIN SUPPORTED gi|227499796|ref|ZP_03929891.1| ribosomal protein L33 49 16 Op 3 . + CDS 45128 - 45343 337 ## gi|282882513|ref|ZP_06291134.1| preprotein translocase, SecE subunit 50 16 Op 4 45/0.000 + CDS 45358 - 45897 773 ## COG0250 Transcription antiterminator 51 16 Op 5 55/0.000 + CDS 45940 - 46365 611 ## PROTEIN SUPPORTED gi|169824236|ref|YP_001691847.1| 50S ribosomal protein L11 52 16 Op 6 . + CDS 46405 - 47106 894 ## PROTEIN SUPPORTED gi|118444059|ref|YP_877187.1| 50S ribosomal protein L1 + Term 47119 - 47150 1.0 - Term 47226 - 47259 4.0 53 17 Op 1 12/0.000 - CDS 47270 - 48469 1606 ## COG0161 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase 54 17 Op 2 1/0.000 - CDS 48479 - 49165 859 ## COG0132 Dethiobiotin synthetase 55 17 Op 3 . - CDS 49167 - 49730 189 ## PROTEIN SUPPORTED gi|163764517|ref|ZP_02171573.1| ribosomal protein L32 - Prom 49801 - 49860 12.8 + Prom 49717 - 49776 10.4 56 18 Op 1 47/0.000 + CDS 49996 - 50529 399 ## PROTEIN SUPPORTED gi|227486741|ref|ZP_03917057.1| ribosomal protein L10 57 18 Op 2 . + CDS 50561 - 50941 423 ## PROTEIN SUPPORTED gi|227525592|ref|ZP_03955641.1| ribosomal protein L7/L12 - Term 50952 - 50979 -0.8 58 19 Op 1 29/0.000 - CDS 51010 - 52002 1173 ## COG2025 Electron transfer flavoprotein, alpha subunit 59 19 Op 2 . - CDS 52002 - 52796 851 ## COG2086 Electron transfer flavoprotein, beta subunit - Prom 52840 - 52899 8.4 + Prom 53013 - 53072 11.2 60 20 Op 1 . + CDS 53302 - 53364 62 ## 61 20 Op 2 40/0.000 + CDS 53407 - 53724 411 ## PROTEIN SUPPORTED gi|220928206|ref|YP_002505115.1| ribosomal protein S10 62 20 Op 3 58/0.000 + CDS 53778 - 54407 648 ## PROTEIN SUPPORTED gi|158319543|ref|YP_001512050.1| ribosomal protein L3 63 20 Op 4 61/0.000 + CDS 54419 - 55042 730 ## PROTEIN SUPPORTED gi|169823853|ref|YP_001691464.1| 50S ribosomal protein L4 64 20 Op 5 61/0.000 + CDS 55042 - 55329 294 ## PROTEIN SUPPORTED gi|228580375|ref|YP_002851076.1| ribosomal protein L23 65 20 Op 6 60/0.000 + CDS 55342 - 56172 1089 ## PROTEIN SUPPORTED gi|227901833|ref|ZP_04019638.1| ribosomal protein L2 66 20 Op 7 59/0.000 + CDS 56184 - 56468 418 ## PROTEIN SUPPORTED gi|169823856|ref|YP_001691467.1| 30S ribosomal protein S19 67 20 Op 8 61/0.000 + CDS 56482 - 56817 429 ## PROTEIN SUPPORTED gi|228002916|ref|ZP_04049908.1| LSU ribosomal protein L22P 68 20 Op 9 50/0.000 + CDS 56829 - 57611 886 ## PROTEIN SUPPORTED gi|227901830|ref|ZP_04019635.1| ribosomal protein S3 69 20 Op 10 50/0.000 + CDS 57632 - 58060 612 ## PROTEIN SUPPORTED gi|227501141|ref|ZP_03931190.1| ribosomal protein L16 70 20 Op 11 50/0.000 + CDS 58050 - 58259 228 ## PROTEIN SUPPORTED gi|169823860|ref|YP_001691471.1| 50S ribosomal protein L29 71 20 Op 12 50/0.000 + CDS 58261 - 58515 324 ## PROTEIN SUPPORTED gi|158319552|ref|YP_001512059.1| ribosomal protein S17 72 20 Op 13 57/0.000 + CDS 58535 - 58903 508 ## PROTEIN SUPPORTED gi|227501144|ref|ZP_03931193.1| ribosomal protein L14 73 20 Op 14 48/0.000 + CDS 58918 - 59226 320 ## PROTEIN SUPPORTED gi|169823863|ref|YP_001691474.1| 50S ribosomal protein L24 74 20 Op 15 50/0.000 + CDS 59238 - 59783 696 ## PROTEIN SUPPORTED gi|169823864|ref|YP_001691475.1| 50S ribosomal protein L5 75 20 Op 16 50/0.000 + CDS 59799 - 59984 291 ## PROTEIN SUPPORTED gi|169823865|ref|YP_001691476.1| 30S ribosomal protein S14 76 20 Op 17 55/0.000 + CDS 60012 - 60407 519 ## PROTEIN SUPPORTED gi|158319557|ref|YP_001512064.1| ribosomal protein S8 77 20 Op 18 46/0.000 + CDS 60422 - 60958 607 ## PROTEIN SUPPORTED gi|169823867|ref|YP_001691478.1| 50S ribosomal protein L6 78 20 Op 19 56/0.000 + CDS 60973 - 61335 417 ## PROTEIN SUPPORTED gi|56418657|ref|YP_145975.1| 50S ribosomal protein L18 79 20 Op 20 50/0.000 + CDS 61349 - 61855 561 ## PROTEIN SUPPORTED gi|146297268|ref|YP_001181039.1| ribosomal protein S5 80 20 Op 21 48/0.000 + CDS 61864 - 62040 167 ## PROTEIN SUPPORTED gi|153952879|ref|YP_001393644.1| 50S ribosomal protein L30 81 20 Op 22 53/0.000 + CDS 62054 - 62503 514 ## PROTEIN SUPPORTED gi|15896364|ref|NP_349713.1| 50S ribosomal protein L15 82 20 Op 23 28/0.000 + CDS 62503 - 63783 858 ## PROTEIN SUPPORTED gi|163796899|ref|ZP_02190856.1| 30S ribosomal protein S11 83 20 Op 24 . + CDS 63792 - 64433 878 ## COG0563 Adenylate kinase and related kinases 84 20 Op 25 . + CDS 64442 - 64696 180 ## PROTEIN SUPPORTED gi|169823874|ref|YP_001691485.1| putative 50S ribosomal protein L14e 85 20 Op 26 . + CDS 64713 - 64931 275 ## PROTEIN SUPPORTED gi|15900168|ref|NP_344772.1| translation initiation factor IF-1 86 20 Op 27 . + CDS 64950 - 65063 193 ## PROTEIN SUPPORTED gi|227901812|ref|ZP_04019617.1| ribosomal protein L36 87 20 Op 28 48/0.000 + CDS 65075 - 65437 455 ## PROTEIN SUPPORTED gi|167036826|ref|YP_001664404.1| 30S ribosomal protein S13 88 20 Op 29 32/0.000 + CDS 65452 - 65847 543 ## PROTEIN SUPPORTED gi|228002936|ref|ZP_04049928.1| SSU ribosomal protein S11P 89 20 Op 30 50/0.000 + CDS 65891 - 66838 1176 ## COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD subunit 90 20 Op 31 . + CDS 66851 - 67192 411 ## PROTEIN SUPPORTED gi|242261125|ref|ZP_04805835.1| ribosomal protein L17 + Term 67227 - 67259 3.3 + Prom 67286 - 67345 9.0 91 21 Op 1 1/0.000 + CDS 67369 - 68274 914 ## COG3956 Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain + Prom 68276 - 68335 9.6 92 21 Op 2 1/0.000 + CDS 68420 - 68698 431 ## COG0776 Bacterial nucleoid DNA-binding protein + Term 68709 - 68738 -0.3 93 21 Op 3 . + CDS 68743 - 68985 324 ## COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) 94 21 Op 4 . + CDS 68987 - 69154 77 ## 95 21 Op 5 . + CDS 69209 - 69523 354 ## gi|282882536|ref|ZP_06291157.1| cell division protein FtsB 96 21 Op 6 2/0.000 + CDS 69542 - 69934 304 ## PROTEIN SUPPORTED gi|15896453|ref|NP_349802.1| hypothetical protein CAC3206 + Term 69943 - 69980 3.1 97 21 Op 7 10/0.000 + CDS 69993 - 71315 1338 ## COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control 98 21 Op 8 11/0.000 + CDS 71302 - 71835 590 ## COG0634 Hypoxanthine-guanine phosphoribosyltransferase 99 21 Op 9 . + CDS 71851 - 73788 1324 ## PROTEIN SUPPORTED gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 + Term 73820 - 73857 4.5 + Prom 73995 - 74054 5.1 100 22 Op 1 . + CDS 74109 - 74210 67 ## + Prom 74212 - 74271 7.7 101 22 Op 2 . + CDS 74294 - 75286 937 ## gi|282882485|ref|ZP_06291106.1| putative lipoprotein + Term 75328 - 75379 2.5 102 23 Tu 1 . - CDS 75390 - 75512 63 ## - Prom 75537 - 75596 4.0 + Prom 75429 - 75488 8.3 103 24 Tu 1 . + CDS 75736 - 76221 389 ## COG2426 Predicted membrane protein + Term 76224 - 76275 13.9 - Term 76211 - 76261 11.2 104 25 Op 1 . - CDS 76269 - 78791 3110 ## COG0744 Membrane carboxypeptidase (penicillin-binding protein) - Prom 78841 - 78900 10.1 - Term 78882 - 78909 0.1 105 25 Op 2 . - CDS 78934 - 79467 261 ## PROTEIN SUPPORTED gi|163764517|ref|ZP_02171573.1| ribosomal protein L32 - Prom 79529 - 79588 8.8 + Prom 79493 - 79552 6.9 106 26 Op 1 1/0.000 + CDS 79586 - 80359 812 ## COG1521 Putative transcriptional regulator, homolog of Bvg accessory factor 107 26 Op 2 1/0.000 + CDS 80368 - 81300 355 ## PROTEIN SUPPORTED gi|145640649|ref|ZP_01796232.1| ribosomal protein L11 methyltransferase + Prom 81329 - 81388 7.3 108 26 Op 3 2/0.000 + CDS 81409 - 81882 677 ## COG0782 Transcription elongation factor 109 26 Op 4 . + CDS 81891 - 83804 2214 ## COG1190 Lysyl-tRNA synthetase (class II) + Term 83821 - 83865 10.2 + Prom 84576 - 84635 6.3 110 27 Op 1 . + CDS 84683 - 85099 506 ## gi|227500047|ref|ZP_03930118.1| conserved hypothetical protein 111 27 Op 2 . + CDS 85102 - 85305 320 ## COG1476 Predicted transcriptional regulators 112 27 Op 3 . + CDS 85335 - 85760 610 ## gi|282882515|ref|ZP_06291136.1| hypothetical protein HMPREF0628_0341 + Term 85840 - 85877 1.2 113 28 Tu 1 . - CDS 86530 - 86727 86 ## - Prom 86749 - 86808 9.8 + Prom 86469 - 86528 6.8 114 29 Op 1 . + CDS 86763 - 87203 498 ## Cbei_3550 hypothetical protein 115 29 Op 2 . + CDS 87221 - 87499 246 ## gi|282882454|ref|ZP_06291075.1| conserved hypothetical protein + Term 87525 - 87568 5.4 + Prom 87527 - 87586 3.4 116 30 Op 1 . + CDS 87703 - 87792 83 ## SPAP_0869 type IV secretory pathway protein VirD4 117 30 Op 2 . + CDS 87808 - 87981 234 ## Apre_1805 TraG family protein + Prom 88021 - 88080 5.0 118 31 Op 1 . + CDS 88277 - 88471 181 ## FMG_0968 putative plasmid transfer factor 119 31 Op 2 . + CDS 88535 - 89053 589 ## COG4283 Uncharacterized conserved protein + Prom 89056 - 89115 3.2 120 32 Tu 1 . + CDS 89162 - 89309 129 ## gi|227500080|ref|ZP_03930151.1| ABC superfamily ATP binding cassette transporter, ABC protein Predicted protein(s) >gi|281297591|gb|ADDO01000041.1| GENE 1 1 - 118 126 39 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTSTNLNIRTDKEIKEKAEKIYSSLGLNMTTAINIFLRA >gi|281297591|gb|ADDO01000041.1| GENE 2 622 - 1095 567 157 aa, chain - ## HITS:1 COG:BS_yqeE_1 KEGG:ns NR:ns ## COG: BS_yqeE_1 COG5632 # Protein_GI_number: 16079624 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: N-acetylmuramoyl-L-alanine amidase # Organism: Bacillus subtilis # 3 142 4 143 182 100 42.0 1e-21 MIIDKRLIKYNYQNRQGNLIKYIVVHDTANTNISADAINHYRYFAGGNRKASAHYFVDDK RIVEIIEDAYASWHCGDGRGKYGITNNNSIGVEICVNSDGNYKKAVENTLSLVRELMKTY NIPIKNVVRHFDASRKICPRSMSENNWAKWWEFKAKL >gi|281297591|gb|ADDO01000041.1| GENE 3 1082 - 1702 664 206 aa, chain - ## HITS:1 COG:no KEGG:ELI_2387 NR:ns ## KEGG: ELI_2387 # Name: not_defined # Def: ECF subfamily RNA polymerase sigma-24 factor # Organism: E.limosum # Pathway: not_defined # 18 199 5 197 200 64 28.0 2e-09 MELERKTKEKDKEKQIQEEKEDYEKLNQQVKLAILGDGKAKLKVVEMLNPLIKYSIKRYC PIYKEYQDLYQDSVLIVLNCLENFDQKRSFPKYVKSYLKYFLLDTFRYLSQKPDMDSKDK EGEDILEKIEDNINIEKEFERKLENIALTKAIKELPPRQRQIIVLYYLENISIKEIGQKM AISKWTVVSAKKKALKKLRSKINDNR >gi|281297591|gb|ADDO01000041.1| GENE 4 1892 - 2860 1131 322 aa, chain + ## HITS:1 COG:SA1400 KEGG:ns NR:ns ## COG: SA1400 COG1702 # Protein_GI_number: 15927151 # Func_class: T Signal transduction mechanisms # Function: Phosphate starvation-inducible protein PhoH, predicted ATPase # Organism: Staphylococcus aureus N315 # 8 314 5 312 315 326 52.0 4e-89 MGNIIRSIEINNSNSEALLFGKLDENIKLIEESFDVKVRDRLGKIEISGSQECVENAELL IYNLLEILKKQDSLTLSDVRYSIELIKKNESRSISELLNDTLVYTSMGKPIKAKTLGQKR YIETIFSNDITFGIGPAGTGKTYLAMAFAVRAFKAKEINRIILTRPAVEAGENLGFLPGD LQNKVDPYLRPLYDALFDILGGDTYQSYVEKGLIEVAPLAYMRGRTLDNAFVILDEAQNT TNEQMKMFLTRLGFGSRAIITGDITQIDLPRGKSSGLKTVLKILDGVKGIGITYLTKNDI VRHPLVARIIAAYDKFDKERKK >gi|281297591|gb|ADDO01000041.1| GENE 5 2861 - 3301 561 146 aa, chain + ## HITS:1 COG:CAC1293 KEGG:ns NR:ns ## COG: CAC1293 COG0319 # Protein_GI_number: 15894575 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase # Organism: Clostridium acetobutylicum # 1 146 1 166 166 102 40.0 3e-22 MIDFENRQDILPISDEDLDIIKMSVEASLELCNIVKEYYVSVSFVDDNEIKNLNRDYRNV DKVTDVLSFPMDEEYEDKIILGDIVINMARVLSQAKEFGHSNRRELSYLCVHSTLHLLGY DHIEEEDRIIMRAKEKEIMDKLKIYR >gi|281297591|gb|ADDO01000041.1| GENE 6 3429 - 4013 550 194 aa, chain + ## HITS:1 COG:CAC1294_1 KEGG:ns NR:ns ## COG: CAC1294_1 COG0818 # Protein_GI_number: 15894576 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Diacylglycerol kinase # Organism: Clostridium acetobutylicum # 2 106 43 147 157 72 44.0 4e-13 MFFNISSIEFMIILFSIILVVFAEMVNTAIERTVDLVVQDYNPIAKYVKDVSAGAVLITA INAIVCAYLIFYEKFASVGDLFLFKIKNSDNHLAFVCLFLVVALTIGGKFLLAKKNGGTY FQGGAVSGHCAIAFCAATIISMVAENSLVTTASFGLALLVGESRVEGKIHTMGQVISGSI LGICVAIFIFKVIG >gi|281297591|gb|ADDO01000041.1| GENE 7 4013 - 4411 475 132 aa, chain + ## HITS:1 COG:CAC1544 KEGG:ns NR:ns ## COG: CAC1544 COG0295 # Protein_GI_number: 15894822 # Func_class: F Nucleotide transport and metabolism # Function: Cytidine deaminase # Organism: Clostridium acetobutylicum # 1 130 1 131 132 128 53.0 2e-30 MDDKKLIELAIKARDTMTYTPYSHYNVGAAVEMEDGSVYCGGNIENASLTPTNCAERTAI FKAVSDGKREIKKIAVVGDSHYTYPCGVCRQVIKEFSKNPRIIVANSLTDYRVHTMDEIL PFAFGPEDLEDK >gi|281297591|gb|ADDO01000041.1| GENE 8 4408 - 5301 944 297 aa, chain + ## HITS:1 COG:lin1499 KEGG:ns NR:ns ## COG: lin1499 COG1159 # Protein_GI_number: 16800567 # Func_class: R General function prediction only # Function: GTPase # Organism: Listeria innocua # 4 296 5 296 301 282 49.0 7e-76 MKEFKSGYVSIVGRANVGKSTMLNSLIGQKISAISNKAQTTREKISFIYTDKDCQIVFLD TPGIQKPKNKLGNFMLNESLSSLSEADIITYIVDTSKKIGKLDSSIIDTLKKLKDKKIIL LINKIDLIAKEELFPIIEAYDKIGIFSHIIPISAMKNDGVDEYIEVIKENLSPGPMFYPE DYVTDKSEKFLAEEIIREKGLRFLQEEVPHGLAVGIEKFKMRSDKEIYDIDAVIYVERDS HKAIVIGKGGSMLKKIGTSARRELENMLDSKVNLKLWVKVSKNWRDNDNKVRGFGYK >gi|281297591|gb|ADDO01000041.1| GENE 9 5288 - 5980 469 230 aa, chain + ## HITS:1 COG:BH1369 KEGG:ns NR:ns ## COG: BH1369 COG1381 # Protein_GI_number: 15613932 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecF pathway) # Organism: Bacillus halodurans # 9 152 6 149 254 82 31.0 5e-16 MAINSDFIEGIVIYERKHGESSKILKIFTKELGNISIMAKGSCSPKSSILSLSQVFVEGL YLFRPGRNFYYIKSGRLINSNYELRNNFTNLCYASLILEIVEKSTLQSSSLNNIYRLLSK ILRILCSSKDPLAKTMAFILKFMSFMGYRPILSVFDNNFFSLESGVVTKNSYTSYSIFKE DIYYLRNLLYTSLDKDFIYDEGRKKYLFFILTKYLKYNLEIGDFNSLKFL >gi|281297591|gb|ADDO01000041.1| GENE 10 5993 - 6874 1110 293 aa, chain + ## HITS:1 COG:BS_glyQ KEGG:ns NR:ns ## COG: BS_glyQ COG0752 # Protein_GI_number: 16079581 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glycyl-tRNA synthetase, alpha subunit # Organism: Bacillus subtilis # 1 289 1 289 295 432 67.0 1e-121 MNFQELIINLQKYWSDKGCIIMQPYDIEKGAGTMNPQTFLRALGPEEWKVCYVEPSRRPA DGRYGENPNRLYQHHQMQVILKPSPANVQELYLDSLVTIGIDPKKHDIRFVEDNWESPTL GAWGLGWEVWLDGMEITQFTYFQQVGGVNLDLESAELTYGLERIAMYLQDVDSVYDIKYN DKITYGDVFKVAEYEHSKYAFEVSDVKLLRNLFDVYEKEAMRVIDEGIVLDAYDYTLKCS HTFNLLDARGAISVSERTTYIGRVRNLAKLVAEAYLIQRKEMGYPLLKGVSNE >gi|281297591|gb|ADDO01000041.1| GENE 11 6867 - 8945 2326 692 aa, chain + ## HITS:1 COG:BH1371 KEGG:ns NR:ns ## COG: BH1371 COG0751 # Protein_GI_number: 15613934 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glycyl-tRNA synthetase, beta subunit # Organism: Bacillus halodurans # 4 691 6 692 693 457 37.0 1e-128 MNRYLLEIGVEELPSRFVNLAMEQIREKIEKSLNENDLKYDSLEVYATPRRLSLYINGIF DRQDDINKEVKGPSVKISFDEDGNPTKPLEGFMKSQNISLKDLEQREVKGNKYVFAIIKK RGLDAKEVLKNIIPDMIYHINLPRNMKWGGKNIKFPRPIRWIVSILNDEVVEFPFEGIPV SNITRGHRFLGSDNIVIDNVDNYAKLLEENFVILDQNKREEIIRFESKKIARSLGGEIKE NKDLLEELVYIVEYPTPIKGTIKKEFLILPKEVITTTMIDHLRYTPIYDDKGELLPYFIT IRNGNHDYEDIVIKGNEKVLGARLSDAKFFYEEDISKPLEDYVDALSGVNFLDKLGNMRE KEERNEAIALEIGKNLEVADETLESLKRTAYLSKADLTTHMVVEFTELQGIMGSIYAKLS GEKDIVNSAIYEQYLPRFKGDDLPKTTVGSIYSIADKIDTISGLFAIDKVPTGSLDPFGL RRSAIGLINIIRNNNWELNLDSILSQALYEYVNKMGLTLNYEAVMKNLKEFFKQRIKVML EDLDYRYDVIDAILESEDKIHIIFKKAPQVDKWFKENDRSKFVDSFERIYNLTSKVSEFK EVDAELFKEDAEKKLFSQIENIKAELEAYNNANKFYDYLNLCDSLTPYIDEFFDKVMVMD KDTSIRDNRLALINRVENVVSRIFAIEKIVLD >gi|281297591|gb|ADDO01000041.1| GENE 12 8958 - 9584 617 208 aa, chain + ## HITS:1 COG:BS_yqzB KEGG:ns NR:ns ## COG: BS_yqzB COG0517 # Protein_GI_number: 16079579 # Func_class: R General function prediction only # Function: FOG: CBS domain # Organism: Bacillus subtilis # 1 208 4 212 212 187 44.0 1e-47 MDLSKRQLKIIQIVKEKAPITGDEIATSLGVSRATIRPDLAVLTMINILGARPNVGYFYT GRSELSLVVDHIKELKIEDYMSVPFVMEETASVYDVIVGLFLEDVSSVFITNNRNLTGVV SRKDLIRTTIGGMDIHNTPISLVMTRMPNLVTIGPLDTAFEGARLIDERGVDSLPVVEEE NGILTVVGRFTKTNVNRMFVEMCKGEII >gi|281297591|gb|ADDO01000041.1| GENE 13 9593 - 10420 1014 275 aa, chain + ## HITS:1 COG:BH1373 KEGG:ns NR:ns ## COG: BH1373 COG1806 # Protein_GI_number: 15613936 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 9 271 9 270 270 246 50.0 3e-65 MKDLENTLVIYVISDSIGETGELIATSSVRQFESENYQIRRYPYHNSIEQIKPLLEEAAK IKNSLIVYTNVVLETRNFIEEKSKELGLYTVDVMGQPMNQLENILGYPPLREPGLIRRLD QNYFKKVEAIEFAVKYDDGKDPRGVRKADICLVGISRTSKTPLSMYLANKLYKVANVPLV PEVPVPKEVYEKDVNRVIGLIANPNKLISIREERLKSLGLASGAKYANIDRIKDEIDYSK QVMDELGCFVIDVSHKAIEETAEIIIERLKKLELR >gi|281297591|gb|ADDO01000041.1| GENE 14 10423 - 11451 867 342 aa, chain + ## HITS:1 COG:RSc2968 KEGG:ns NR:ns ## COG: RSc2968 COG0232 # Protein_GI_number: 17547687 # Func_class: F Nucleotide transport and metabolism # Function: dGTP triphosphohydrolase # Organism: Ralstonia solanacearum # 12 330 15 382 387 231 40.0 1e-60 MNTREVYEELEEKILKPYATLAKDSKGRQVFEEKCNIRTDFQRDRDRIIHSKSFRRLKHK TQVFIAPEGDHYRTRLTHTLEVAQIGRTIARALGLNEDLVEAIGLGHDLGHTPFGHFGEE ILDKLNPKGFKHYKQSLRVVDFLESSEKRIGLNLTFEVRDGILNHQGDNKASTLEGTIIK FADRIAYINHDIDDAIRAGIIKKEDLPKDILDVLGYSHSKRINTMISSIIKKSFGKPIVE MEEEIYRATMDLRKFMFDKVYFNPTVKSEDKKITRLLTDLFDYYMNNLDILDKKHLALYE NIDHSKEDIITDYIAGMTDTFAVREWKNLFLPKNWSRNEFYN >gi|281297591|gb|ADDO01000041.1| GENE 15 11435 - 13237 1285 600 aa, chain + ## HITS:1 COG:CAC1299 KEGG:ns NR:ns ## COG: CAC1299 COG0358 # Protein_GI_number: 15894581 # Func_class: L Replication, recombination and repair # Function: DNA primase (bacterial type) # Organism: Clostridium acetobutylicum # 3 593 4 596 596 369 38.0 1e-102 MSFIIDDNLLEEIRDKVDIYELISQYVNLKRSGANYIGLCPFHNEKTPSFSLSPSKGIFK CFGCGEGGDVISFVMKREGLGFREAIKFLADKYNIELRQAHYSKKDKELKDKAQRFYEIN RQAALFFYNNLKNSKLGMNYLRKREISPAVINKYGLGFANDSWDNLKNHLLSLGYKEEEL VEINLLSSSKGKTYDRFRNRIMFPIIDTKGRVIAFGGRVLGDEKPKYLNSSENLIFHKGS NLFNLNLISKEASRDKIILVEGYMDVISLYNSGINYSVASLGTSLTQAQAGLIKRYAKDI YICYDGDSAGINATVRAIDIMLSEGISPKIISLAEGLDPDEYIKKYGKISFEGQVANGKS FLDFKIDNLKEKFNLSSSDGLSKFTMEAGKILSSIKNPIERDVYMRNFCKTYGISTISLN SYISLINKNRPKKKFDKPKKIIKPKGKLQSGNIKAQKGLIAYCLAGHDFYDYIKSKVELT LFSSVEIRIIFEELENYYDKKIKKDDFFKDLINKGLVSSETYKEIISLIVDEPEGNKIIS DYLLTLKRSWLLQEKENLLNQLDSIAKSNSKDKEIFEKVINDLRTINLELNDINEGVKDE >gi|281297591|gb|ADDO01000041.1| GENE 16 13230 - 14315 1530 361 aa, chain + ## HITS:1 COG:BH1376 KEGG:ns NR:ns ## COG: BH1376 COG0568 # Protein_GI_number: 15613939 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) # Organism: Bacillus halodurans # 11 361 17 372 372 435 69.0 1e-122 MSEKKQTGNKDTTINNLKKEGKEKGHLTYDEISFALEDIPMDSQEIDSIYKDFENDGIEL LNDDRDKDYKEEIDVEKEDLSVPKGISVDDPVRMYLKEIGKIPLLTGDEEVEIAKRMENG DNSAKKELAEANLRLVVSIAKRYVGRGMSFLDLIQEGNLGLMKAVDKFDYTKGFKFSTYA TWWIRQAITRAIADQARTIRIPVHMVETINKLVRVQRQLVQELGRDPLPEEIAKEMNIEV EKVREIQKIAQEPVSLETPIGEEEDSHLGDFIPDEEILSPQDAATFTLLREQLSTVLETL TDREKKVLTLRFGLDDGRARTLEEVGKEFAVTRERIRQIEAKAIRKLRHPSRSKKLKDFL E >gi|281297591|gb|ADDO01000041.1| GENE 17 14312 - 15004 580 230 aa, chain + ## HITS:1 COG:CAC1302 KEGG:ns NR:ns ## COG: CAC1302 COG2384 # Protein_GI_number: 15894584 # Func_class: R General function prediction only # Function: Predicted SAM-dependent methyltransferase # Organism: Clostridium acetobutylicum # 2 225 1 226 229 110 32.0 3e-24 MIKLSKRLRAIVNFCDKNKIIADIGTDHGFVPNFLFEEDITRKIIATDISLNSLNKAIEF TELRGNKGKIEHIVCNGLEKIPPVDQIIIAGMGGILISKILDRDFEKARQAEKLILQPMQ QVDYLRKFLYDKGFKILDEKIVFEDNKFFHIIVANYKAIKEEYRDIDLKVSKLLRNRKDK DLIEFLKYLINYNIFIIKNIEGSSTRSIYKKDKLREENIKLKEILDEIQK >gi|281297591|gb|ADDO01000041.1| GENE 18 14988 - 15758 748 256 aa, chain + ## HITS:1 COG:SPy0931 KEGG:ns NR:ns ## COG: SPy0931 COG0327 # Protein_GI_number: 15674951 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pyogenes M1 GAS # 4 236 2 236 262 115 30.0 6e-26 MKYKSKEIFDFMDMWAKKEYMMSWDNSGMQIYFDTYISNILLCLDVDDKSLEMAKNNNCQ AIISHHPLFFGGEKNIIEGSYRGDLILSLINNKISVYSGHTTLDVVSDGVNFSLARFLDL KNQESLALDDGLPIGIVGELKEEKSIEEILKNFRDKLNIKNIRTYGKDKKIKKVSLCGGA GSSYMDEAIKNGSQLFISGDIKYHDGQYAYENNIIAMDIGHFHSEKLILPRIKEKLLEKF SELDIFIKDDSSYEMF >gi|281297591|gb|ADDO01000041.1| GENE 19 15788 - 15922 180 44 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MGVSKLVNCTKCEESLRSTEQRCLLTTSGGDPKASATEIYRHYW >gi|281297591|gb|ADDO01000041.1| GENE 20 16237 - 17385 227 382 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167856514|ref|ZP_02479226.1| 50S ribosomal protein L1 [Haemophilus parasuis 29755] # 274 382 72 175 175 92 44 9e-18 MWSIKNKLPMGLVALCAVSIVGLKDTGVFINEHVQRTYSGNEISFAIGEQVNILEKTGNS YIVKKGKAKVTIPEDKILVKEVNIPTYKVVKSSPIKKDGKVVRNLFIGEYAIEVKNNKDT VTIKCNDGTVGEVSKSVVEKVADKRENKTEVKVKSNAVAKSNNGKLKLKAGESVSVVDYN DGDFIIKDDNGKKYTLEAEKLSLESGKKSNNVQAKDEAKNIMLAMDNDSKEIEKIAKQAS KYNSQDFTDFKYKSSENISPTASKIIASAYDKMGSTYVYGSTGNGGFDCSGLVYAIYKDE LGINLPRSSSEQSGFGKQVDRSDLIEGDLIFFNTTGSGVSHVGIYIGGGKFIHASSGAGK VIESSLSEDYYSSRYVNATRVF >gi|281297591|gb|ADDO01000041.1| GENE 21 17543 - 19075 182 510 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 262 485 5 215 305 74 26 2e-12 MDNKGQNLVVEMRNITKKFGDFTANDGINLDIKKGEVHALLGENGAGKSTLMNMLYGLFQ PTDGQIFINGEEVKFKDPNDAIKKGLGMVHQHFMLIQPFNIVENIVLGMEPSKGICLDMK KARKDVVNLSEKYGFSIDPDAKIQDVTVGTQQRVEILKVLYRGADILIFDEPTAVLTPQE IEELVGIINNLKNSGKSIILITHKLKEIKEMADRCTIIRRGKKIKTVDVCDVSEEELADM MVGRAVVLDVEKSPQLPGSEVLKIEDLHVKDARGVYKVNGLNLSLHYGEILGIAGVDGNG QSEFLEALTGLRKVEKGKIILDNKDITNKKPREIQEHGLNNIPEDRHRRGLVLDFSVAEN YVLENYYKDEFSNKGILNFKKIKEYANNLSEKFDVRPRDINYAVGDLSGGNQQKVILARE ISNDPSVLIAAQPTRGLDVGAIEFIRKFLVEQRDKGKAVLLVSFELDEILALSDKISVIY GGKIVGTFNREDTNEKELGLYMAGGKNENQ >gi|281297591|gb|ADDO01000041.1| GENE 22 19062 - 20192 1075 376 aa, chain + ## HITS:1 COG:BB0678 KEGG:ns NR:ns ## COG: BB0678 COG4603 # Protein_GI_number: 15595023 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Borrelia burgdorferi # 3 346 16 360 383 246 42.0 6e-65 MKINKRFTYTIIAIIFGVLIGSLILIINNINPIKAYKVIFLGAFGKPKYVSWVIVRSVPY ILTGLSVAFAFQTGLFNIGAEGQFIVGSIGALVSGLLLNLPPVLHAIVALIVGTLCGSLW GAIVGYLKSNHNVNEVISSIMFNWIGFYLLNYSLTFPSLRSIESDNSYTIKASASIRFLG EWKKSQAGRAFLSHNKILRDVLNPPVNWGIIIAIVCAIVIWYILKKTTLGYELKSVGFNA DAAEYAGINIKSSIIKSMAISGALAGLAGAIMVLGVNHHIGKLASMENYGFDGMAVALIA GNAPLGVIPAALLFSGLNYGGAKLTTIGTYSEVVKIVIGIIIIFISMPKLFDILKQKFKN NSKVINKPQKEVEKNE >gi|281297591|gb|ADDO01000041.1| GENE 23 20185 - 21144 1208 319 aa, chain + ## HITS:1 COG:SP0848 KEGG:ns NR:ns ## COG: SP0848 COG1079 # Protein_GI_number: 15900735 # Func_class: R General function prediction only # Function: Uncharacterized ABC-type transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 11 316 10 314 318 218 43.0 1e-56 MNDFLLNLANILSITLLYSAPLIYTALGGVISENGGVVNIGLEGMMSIGAIVGATVGFYS GNPWLAFLCAGLGGMALSLIHAVATVNLAADHVVSGIAINLLGPGLALYLCRLFFDGAAM SKAIPYQNKLPMVFKGIFTSERIGRYPILKYLDIIFSQYVIVYIAFALVFISWFVLYKTK LGLRIRAVGEHPRAAETLGVNAYLIKYIAVLTSGFLAGLGGGAMSLAVVSNFRETLISGQ GFIALAAVIFGGWRPQGALLACLLFGAAQGLSIFLGSIGIQIDTNLLSMIPYILTLVVLV LFVKGSKAPSADGKPYERN >gi|281297591|gb|ADDO01000041.1| GENE 24 21157 - 22218 1490 353 aa, chain + ## HITS:1 COG:CAC2788 KEGG:ns NR:ns ## COG: CAC2788 COG0006 # Protein_GI_number: 15896043 # Func_class: E Amino acid transport and metabolism # Function: Xaa-Pro aminopeptidase # Organism: Clostridium acetobutylicum # 2 353 3 358 358 321 46.0 1e-87 MNNRIERLINKLKENNINNILITDTYAIYYFCKKWYHPEERLVMLNVSSDGRVILYVNKL FPTEEFGPILKWYQDTDDPLSLVLEDIKGNVGVDKNLCAKFLLPLMERSDCKFILASDLI DDLRAIKDEEEINKMIKSSQVNDMAMKMMKDKLKEGISEKEMALFLKESYKALGSSEFSF DPIVAYGANGADPHHTTDESLPKDGDSIVVDMGCILDDYCSDMTRTFFYKSVSPKAKEVY NTVLAANLAGIAAVKPGRPVSDVDKAARDVIEKAGYGKYFTHRTGHFIGLETHEKGDVSF TNDRLMEVGNIFSVEPGIYLPGEIGVRIEDLVLVTEDGCKVLNSYDKDLTVIK >gi|281297591|gb|ADDO01000041.1| GENE 25 22285 - 23211 1137 308 aa, chain - ## HITS:1 COG:no KEGG:EUBREC_2028 NR:ns ## KEGG: EUBREC_2028 # Name: not_defined # Def: alkyl hydroperoxide reductase # Organism: E.rectale # Pathway: not_defined # 7 305 8 298 300 207 41.0 5e-52 MKIKKIVSLALLSMMVFFMVACNKDNSNNNEANVQTKEETRLDKDQEKNMQEKKKELDAK MEEQNKIFEKDKELWDKLFLKADKSKVGENKDMPYEDFLTQLLEENKSDFTDEEVKTLEE GISKIKVLAKDIQRLNNEYQSLQSKKMPDRNAETFPSFTGKDFDGNDVDSTLIENSKFTV MNFWFNGCAPCVGEIGDLNKLNEKLKEKGGQVIGVNTEALDGNKTAIEEAKKILETKGGK YKNIYFDSSSEAGKYALTVTGFPTTIVLDPYGKIMGNPILGPITANDNEKLLMEQINKVL DADSSTPI >gi|281297591|gb|ADDO01000041.1| GENE 26 23201 - 24133 590 310 aa, chain - ## HITS:1 COG:MJ0750 KEGG:ns NR:ns ## COG: MJ0750 COG0348 # Protein_GI_number: 15668931 # Func_class: C Energy production and conversion # Function: Polyferredoxin # Organism: Methanococcus jannaschii # 92 290 52 234 238 92 31.0 1e-18 MFGMCGYRLMKVSKIFSKFRTYWQFLASILTNIHLPNFIKGDIYKGKGKMACVPGLNCYS CPGASGSCPIGSFQAVIGSSKFKFTYYISGFLILMGVLFGRFICGFMCPFGLFQDLLYKI PSKKFSTKKLKPLKYLKYLIFLFMVFLLPLLITNEIGMGNPFFCKYLCPQGVLEGAIPLS IVNPSIRAALGKLFTWKLFLLLTFTLSSIFVYRPFCKFICPLGAFYGLFNKLSFLQMKVN FDKCIGCKKCYKACKMDVDVCKDPNHNECIRCGLCINVCPVEAIEFRYGFGNGKEYLKDK NNNKGVNYEN >gi|281297591|gb|ADDO01000041.1| GENE 27 24359 - 25030 763 223 aa, chain + ## HITS:1 COG:SMc00458 KEGG:ns NR:ns ## COG: SMc00458 COG0745 # Protein_GI_number: 15964767 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Sinorhizobium meliloti # 1 221 1 217 223 167 41.0 2e-41 MRILIVEDEKDLCQMIAKSLKESGYEVDIAYNGNEAMELLDVENYDLIVLDLNLPEIDGM EILEEFRTFNQDTKIIILSARSQIKDKVEGLDKGANDYLSKPFHLDELEARIRSLTRRNF ITNNQMLSYKNLSFDSKKRIVKIDDKEISLTRKELGILEYLLLNRGRPISQEELIDHVWD SSVDLFSNSIRVHISALRKKLKKALKYDPIINRVGLGYQLEEE >gi|281297591|gb|ADDO01000041.1| GENE 28 25034 - 26170 900 378 aa, chain + ## HITS:1 COG:Cgl0851 KEGG:ns NR:ns ## COG: Cgl0851 COG0642 # Protein_GI_number: 19552101 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Corynebacterium glutamicum # 97 374 160 441 455 132 29.0 9e-31 MKKLSLQWRITIMTSILIAFSCICINLMSYFQGIFYMDSIGGFVSDFSKYNEEKLYISIP SDKLDDFSDEINHEIDKRKVSFSYRGWIATFIVTCISGFVAYYVSGKSLKPLKEFSKKIE EIEMSNITDSLVSEDEVLEFRNLSHSFNNMLKRLEDSFEEQGQFTANAAHELRTPLALMQ TQLDLIKKNKDMTFLEFEKNSKTFENQLDRLSKLTKVLLQMSEISTIKRNEKIDLYPLIE EVMEDLSYLADEKNISMEIEGDGGIILGSDILIYRVFFNLIENAIKYNREDGYIKIKLKR DKDKINIDISDNGIEIPKKFRDKIFKAFFRVNKSSSVSGSGLGLCLVDKVINLHSGKVFV KDSNKDKTTIGLELKLIK >gi|281297591|gb|ADDO01000041.1| GENE 29 26248 - 27483 807 411 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 8 404 6 420 447 315 41 5e-85 MDKVIVKDDRKVLQAMKKIVLGLQHLIAMFGATVLVPILTGFDVSTAIFAAGAGTLIFHF CTKNKVPVFLGSSFAFIPVIQLVGKTEGLEYAQGGIICAGLIYVFISFIINRIGVGKILK FFPSQIVGPMIIVIGLNLLPTALNMAKTNIILSAVTFSTCLILSNFAKGFIKQLSIIISV IIGYILSLYLNVVDTSLISQASIVAVPKFQLPAFSISAIITICPVVMAVFMEHLGDITTN SQVVGKNFIKDPGLNRTLLGDGLATMFAGFIGGPANTTYGENTGVLAITKNYDPSILRLA AIFAIILSFVGKIGGFLSSIPQAVMGGISVVLFSMISLVGFKTLKNSRTQMNLKNIIIIA SILIIGLGSHLGLNLQIKITNQVSLSGLSLAALVGILLNIILVKYEEHVSK >gi|281297591|gb|ADDO01000041.1| GENE 30 27601 - 28146 397 181 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167856598|ref|ZP_02479300.1| 50S ribosomal protein L35 [Haemophilus parasuis 29755] # 25 179 2 157 159 157 47 2e-37 MRVRIFLWRCLEIKELQINEEIRDKEVRLVDEKGNQVGVVNVDRALDMAEASKLDLVNVA PNAKPPVCKIMDYGKYRYELIKKEKEAKKKQKVINIKELRLTPNIETHDLNTKANRAIDF LKSGDRVKVAVRFRGREMGHTDIGREVLDKFVELVSEYGVVDKKPKMEGKNMIMFLSAKD E >gi|281297591|gb|ADDO01000041.1| GENE 31 28159 - 28350 231 63 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169824393|ref|YP_001692004.1| 50S ribosomal protein L35 [Finegoldia magna ATCC 29328] # 1 63 1 63 63 93 69 3e-18 MGKMKTHRASAKRFKRTGSGKIKRFFAYKGHLTGKKTAKRLRKLRKSSLVSKGDQKRIDH MIP >gi|281297591|gb|ADDO01000041.1| GENE 32 28363 - 28713 451 116 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227485252|ref|ZP_03915568.1| ribosomal protein L20 [Anaerococcus lactolyticus ATCC 51172] # 1 116 1 116 117 178 75 1e-43 MARVKRAVNAKKRHKNILKQAKGYFGAKSKLFRPANQAVMKSLSYAYIGRKQRKRDFRKL WITRINAATRLYGMSYSKFISGLKKAGVNINRKMLSEMAINDPQGFKELVDIAKAE >gi|281297591|gb|ADDO01000041.1| GENE 33 28812 - 29297 869 161 aa, chain + ## HITS:1 COG:no KEGG:CLOST_1772 NR:ns ## KEGG: CLOST_1772 # Name: not_defined # Def: ubiquitin-associated-domain-containing protein # Organism: C.sticklandii # Pathway: not_defined # 1 159 1 134 168 82 35.0 7e-15 MINLEKIDYVINTTGAGYELVREALLNSDGDVDRAIGYIEAKKFKVSQNKKDERIEAEAQ VIEENESKKDIFGGVTDTLDEIIQGIKEIWRKGNASRLIVEKDNETVLSLSLTVSTFGAI IAPIASILGLTVAYITDYDFKIIMADGKIIDVREYIKNKSK >gi|281297591|gb|ADDO01000041.1| GENE 34 29331 - 30074 173 247 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 [Bacillus selenitireducens MLS10] # 109 245 101 242 255 71 32 2e-11 MEKMFIQSKDNKYYKYLKKFLQKKYRYEENLFLVEGPIVFKEAIKYMTPSYIAIRDDKEE QYKDLLGDRDYFIFPSHLFNKISDSQSPQGIISYFPMVHKKFQEKSGKFLYLDKISDAGN MGTIIRTADAFNLSGVIISEYSCDIYNPKTIRATMASIFRVPIYFLKEDELIKNNFKIIV SALEDSKPIKECDLSGDLILVIGNEAHGVSQKILERANLKVKIPIRDSVDSLNAGVAAGI FAYEMSK >gi|281297591|gb|ADDO01000041.1| GENE 35 30098 - 30760 598 220 aa, chain + ## HITS:1 COG:no KEGG:CLOST_1122 NR:ns ## KEGG: CLOST_1122 # Name: not_defined # Def: hypothetical protein # Organism: C.sticklandii # Pathway: not_defined # 1 218 17 237 242 117 35.0 4e-25 MPDYMVDKLKVFPYEIVKTIENKNMPKGINTHPDMLIYGLENGDIIVDRDNYKYYKDIFT ERKVIKTDKSLGYLYKDHVGLNGFYYKGYFIGNLKFIDKNILNFYQENKVSLIDVRQAYT KCNTLVTDNFLVSSDMSIYKACKDIFEPIKINHKEIKLNGFNYGFIGGCSGYIDNKLILT GDISLHSSGQEIIDACRRYNIEIINLSQNMLEDFGSILFV >gi|281297591|gb|ADDO01000041.1| GENE 36 31024 - 32934 2298 636 aa, chain + ## HITS:1 COG:CAC2362 KEGG:ns NR:ns ## COG: CAC2362 COG0441 # Protein_GI_number: 15895629 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Threonyl-tRNA synthetase # Organism: Clostridium acetobutylicum # 3 632 4 633 637 758 57.0 0 MFITLPDGEKKEFEKGISVGEVTKSISEGLYRDSVGAKVNDKVLGNADKINEDSTFKVLK LDDLEGQKILWHSASHLMAYAIETLYPNTKFAIGPAIDSGFYYDMDLDHRFVEEDFQAIE KKMIELAREDLKIVRVDITRDAAIKYFKEKGQDYKVELIEDLAEDEPITLYQMGEFTDLC RGPHLESTKKIKAVKLLSIAGAYWRGDSNNKMLQRIYGIAFDKKKKLDEFIEKREEAEKR DHRKLGRELDLFSMHEEGPGFPFFHPNGMITRNNLLSWWKNVLQERGYGEILTPVILNED LWHRSGHWDHYKENMYFTEIDEEGYAVKPMNCPGSTLIYSTTPHSYRDLPLRYAEFGLVH RHELSGALHGLFRVRSFTQDDAHIYCLPNQIKSEVFEIIDLANLLYDTFGFKYSVELSTR PDDYMGDLGSWNEAEKALKEALEEKGMPYTINEGDGAFYGPKIDYHLEDAIGRTWQCGTI QLDFQLPQNFELTYVAEDGSKKRPVMLHRALFGSVERFMGILIEHFAGKFPLWLSPVQVE IIPVSEKFKPYAGEVFDQLKKAGIRVKIDERAEKVGYKIREAQLKKVNYMLVIGEKETES HKLSVRKRSGEEVKDVEVSKFIEDLKKEIESKEIIL >gi|281297591|gb|ADDO01000041.1| GENE 37 33516 - 34520 1035 334 aa, chain + ## HITS:1 COG:ECs0201 KEGG:ns NR:ns ## COG: ECs0201 COG1135 # Protein_GI_number: 15829455 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, ATPase component # Organism: Escherichia coli O157:H7 # 1 334 1 340 343 301 45.0 1e-81 MIEVKNLVKVFQVDGKEFKALDDVSFKVNDGEIFGVIGLSGAGKSTLVRCINRLEEPDSG QIIIDGIKILSLSPEELRKERKDIGMIFQSFNLFMQKTVYDNIAYPLEISDVNKDEIEKR VNELLKFIDLEAKKNAYPSELSGGQKQRVAIARAIATNPRILLSDEGTSALDPANTQAIL NLLKKIVKEYKTTIIMITHQMEVAKDICDRIAVMESGKIIEENATKELFRNPKTKITKSF IKNLKDEVEEEVINAEDFKGDVYRITYANNNYDKPILSICMKKFDVFINILSGNINKLNV DSVGYLTVEIQGSKEERKKALDFLVENQVNVEVL >gi|281297591|gb|ADDO01000041.1| GENE 38 34521 - 35174 869 217 aa, chain + ## HITS:1 COG:FN0659 KEGG:ns NR:ns ## COG: FN0659 COG2011 # Protein_GI_number: 19703994 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, permease component # Organism: Fusobacterium nucleatum # 4 209 18 223 233 172 49.0 4e-43 MDRLISIIGPAIPQTLIMVFASTFIAIVLGLPLGVILTITRKDGLCQNLKIYSVLDKIIN ILRSFPFIILVIVVFPLSRILVGKAYGTAAMIIPLSISAAPFVARLMEGYFNQIDKGIIE AAKSVGSTNMQIITRVLIPEAMPMIVNGITMTLINVVGYSAMAGAIGGGGLGDIAIRYGY QMRDEVILWSTVVLIILIVQIVQVIGNRIEKKIDRRF >gi|281297591|gb|ADDO01000041.1| GENE 39 35216 - 36115 1275 299 aa, chain + ## HITS:1 COG:FN0658 KEGG:ns NR:ns ## COG: FN0658 COG1464 # Protein_GI_number: 19703993 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface antigen # Organism: Fusobacterium nucleatum # 63 289 27 252 261 218 48.0 8e-57 MKNLKILGVAALSLTLLLSACGKNDAKTEEKANGANATNQAEQTADGQKKDLVPISEDNK IVIGVSATPHGEIVDALQDKFKEAGLDVKTVVFDDYIQPNLQLSSGDINANYFQHEPYLD EFVKDRKIDNITTLGFVHLEPMALYSAKYKSISEIPDGSDIILPNDPTNGARALILLEDA GLIKIKDRTNLNTTEKDITENPHNFKFTAVEAPSVAQVYKDAGAGVINSNFALTAGLKPT SDSLYLESSDSPYANLVAIRKEDTNKEKFQKFIEILQSEDAKKFIDEKYQGAIIQVKNK >gi|281297591|gb|ADDO01000041.1| GENE 40 36328 - 36630 137 100 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKLSPLFLFFKFNFDKYEPTLSLSLIQVDFRKLLFQNKKSPLSLIRQRTKIPRYHLLFLY KNKLSSIYQCRVFVTPTKATNLTIISDLQYRKMIFILLPI >gi|281297591|gb|ADDO01000041.1| GENE 41 36632 - 37975 1257 447 aa, chain + ## HITS:1 COG:CAC1610 KEGG:ns NR:ns ## COG: CAC1610 COG1114 # Protein_GI_number: 15894888 # Func_class: E Amino acid transport and metabolism # Function: Branched-chain amino acid permeases # Organism: Clostridium acetobutylicum # 1 430 1 431 440 322 43.0 1e-87 MKKLTRSQFIQVSIMLFGLFFGAGNLIFPPLLGNQAGSATFLALLSFSITAVVFPVIGAI VVGKTDGLSNLAQRVGPKFSLVFTTAIYLSIGPGLGIPRAGSVPFEMAIAPLLPQSFNMN LARLVYTFVFFAVALWVCLKPNKLVKRVGKYLTPALLLMILFMFVRLMFLDKNVAAPVGD YGKSPVLKGFLSGYDTMDAVAALNFGFVIALAIRRFGVTDKKEVTKYTIKAGVFAGLVLF AVYAMLSSIGMNSSVLLAGAENGAEILTKTCQYAFGNFGFFLLAAIFTLACLTTCVGLIS SGGEYFATLFKEKLSYRTWVYIWTFFSFVVANFGLNNLLAFSVPVLTLIYPVALVLIVMG ASHDFVRYGKFSYLTGAFFSVGLPFVQMLRTTFSVSLPVLTELENNLPFAESGLSWLVPT FVGVLIVSLLEKVFLANKTYGQVKERA >gi|281297591|gb|ADDO01000041.1| GENE 42 38146 - 38370 367 74 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282882475|ref|ZP_06291096.1| ## NR: gi|282882475|ref|ZP_06291096.1| hypothetical protein HMPREF0628_0272 [Peptoniphilus lacrimalis 315-B] hypothetical protein HMPREF0628_0272 [Peptoniphilus lacrimalis 315-B] # 1 74 1 74 74 127 100.0 2e-28 MYKKSLVSIFIIFLLVAGFYFNNYNDKKVTKTQYEKMTGREISKEEWEEITKDGQVEIIG VADGPTSIYVKSSK >gi|281297591|gb|ADDO01000041.1| GENE 43 38546 - 39211 616 221 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282882530|ref|ZP_06291151.1| ## NR: gi|282882530|ref|ZP_06291151.1| conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] # 1 221 1 221 221 418 100.0 1e-115 MLKAKRILLIIFIIFLAILTSNYFSRREKDDNNFYRQLENDANFLHSDIIKIDEGLYFIV DNRQITNARVRKEMGLSNKTNTIPKSNGKIVYGYLYCDKPVQTPTAFSCTVRGRAYVKAI FEYGTFRFLECTEVSWSAMGSNVFNVDNGEGAFHIDNYGKYLVIEGAFNVSTDVPKEIGT VGDLAGWEIDFSTGKTIHLRKWVRVRHEFNGDNIGRLYFVK >gi|281297591|gb|ADDO01000041.1| GENE 44 39286 - 40854 1637 522 aa, chain + ## HITS:1 COG:L195271 KEGG:ns NR:ns ## COG: L195271 COG2509 # Protein_GI_number: 15673161 # Func_class: R General function prediction only # Function: Uncharacterized FAD-dependent dehydrogenases # Organism: Lactococcus lactis # 15 516 10 521 535 421 45.0 1e-117 MNYNITGDNLIILRNIKLPFDASKEDLFKKVKNLIKKDDFSYSIYKRSLDARDGIFYVYQ VLVDTDVSPQIFNKLKNNISYYNEEKLILYNKNKVKSALVVGAGPAGLFCAYSLLKAGVG VKIIERGDDIDTRMEKIKNLMQNSILDENSNISFGEGGAGTFSDGKLTSRSKDKRSRKIF EILVDHGGPSEILYDAMPHIGTDVLRNVIKNIRKSILKMGGEFYFRTKFIDLKFEDGKVK SLITDKGEFEACQYILALGNSSRDTFSFLNKYISLEAKPFALGFRIEHLQSDINFSQYKI KNESLPQASYALTYSKKENPHSAYTFCMCPGGYVVPSASEKNRLCVNGMSEHKRNGINAN SALVCTVSPDFYGNSPLGGIDFQRKIEERAFILGGGKYFAPVQKVCDFLADKESTSLGKI IPTYKPGYKLTSLNDIYSPSINKVLKEAILSMDKKLHGFANNDAILTGVETRTSSPVRIL RKDYHTLEYNNLRPIGEGAGFAGGIVSSALDGLKCAIEILEG >gi|281297591|gb|ADDO01000041.1| GENE 45 40856 - 41320 477 154 aa, chain + ## HITS:1 COG:FN0809 KEGG:ns NR:ns ## COG: FN0809 COG0219 # Protein_GI_number: 19704144 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted rRNA methylase (SpoU class) # Organism: Fusobacterium nucleatum # 2 150 1 148 150 183 58.0 1e-46 MLNICFYEPEIPFNTGAIARTCGLTNTRLHLIKPLGFEIDDKHVKRAGLDYWHLVDISIY DSYDDLLKRFPNSRFYLATTKASKLYTDVKYNDEDVIVFGPETRGLPEDLIFSNYDDAIK IPMLKNYGRSLNLSNSANIILFEALRQNNFFDLI >gi|281297591|gb|ADDO01000041.1| GENE 46 41331 - 43628 1715 765 aa, chain + ## HITS:1 COG:lin0195 KEGG:ns NR:ns ## COG: lin0195 COG1199 # Protein_GI_number: 16799272 # Func_class: K Transcription; L Replication, recombination and repair # Function: Rad3-related DNA helicases # Organism: Listeria innocua # 1 763 1 776 779 579 40.0 1e-165 MKELRISVRNLIEFVKRSGDIDRGFYSNSRAMAGIYAHKKLQALYSSSYKKEVFLSTSIS ISDFNLTVEGRADGIGYDEKTCLYVIDEIKSTSRDLDELDYDSNILHWAQAKTYAYIYAK NKNLDRINVRLSYFHLPTSQIKKIDHEFSFEELSDFFNELIVSYLEFSKRLTEWKEIRNE SIKACRFPFKNYRVGQREMAVAVYNTISKTNKLFVQAPTGIGKSMSVIFPSIKAIGEDKL DKIFYLVSRSTGKITAQDSLFKLMDRGLRIKYLTLTAKEKICINDEVKCNPKDCPFAKGH FDRVNDAIIDIFDSVDEFKRSNIEKYSRLHLVCPFEFQLDLANFSDFIIGDYNYAFDPIV YLKRFFEGSLESYVFLIDEAHNLVDRAREMYSAEFNLNDLMLLDEYLPKSLKINRANNLK AISEFNLLAKTRFFSYQAFENLNEALEKLMYSLNDYLIKYKEDEHYDEILNIYFNLFSYN KIYQYYNKDFVSVKEENTIKILCLDSGDIFKDFLKNARASVFFSATLEPLKYYGNLLGAD ENTYYYKIKSPFDTNKLLVLRDKKILTTYRYRKNFVADIVRLLKLFTEKKGNYIFFFPSY AYMEMVYEEYKKIDEKVIIQSRQMTETDRSEFLLKFKFQEDLRAFAVMGGAFSEGIDLLG KRLIGVAIISVGIPQISFERNILKNHFQKKLKKGYDYAYIYPGMVKVNQSGGRVIRSEDD KGVVLLIDKRFSIEPYSKLLPSHWIVEDFYSDKDIKKRLGEFWEE >gi|281297591|gb|ADDO01000041.1| GENE 47 43838 - 44869 620 343 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282882562|ref|ZP_06291183.1| ## NR: gi|282882562|ref|ZP_06291183.1| hypothetical protein HMPREF0628_0277 [Peptoniphilus lacrimalis 315-B] hypothetical protein HMPREF0628_0277 [Peptoniphilus lacrimalis 315-B] # 1 343 1 343 343 594 100.0 1e-168 MFFFTYNNEILKASSIIEIKPLEFLLYVDDKNLILNSNQLSIADYKSLLSFCSDFDEDQI TMEDCSYLDFCNCKIDKLSFMEILNIYRAIYKNSSTKAESFRQKLVESLKNLVYNYTNKG LKTDLKSFKEIVRRALETDILCEDYGIEPILKEYILFLKIKAYESMNLYELLSERDRFYD VMFGKTDIKDLGFPEVDYDTLIDRVMPALKILIHLKEDIYLLELFNIYRDYELQNPFIIN KEQYNKRRRGDFIFSENALLFFNYEYFENLGISTNFFVDDINELYPWQFSYISDYLYSLV EKVINKVKEEDAFTYKLKTVERNHGNSPFIKFFLDYVKGIIKI >gi|281297591|gb|ADDO01000041.1| GENE 48 44969 - 45118 204 49 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227499796|ref|ZP_03929891.1| ribosomal protein L33 [Anaerococcus tetradius ATCC 35098] # 1 49 1 49 49 83 71 4e-15 MADRVVLECPDCKNRNYVTYKNKKNTTQRLELKKYCKFCKKHTLHKETK >gi|281297591|gb|ADDO01000041.1| GENE 49 45128 - 45343 337 71 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282882513|ref|ZP_06291134.1| ## NR: gi|282882513|ref|ZP_06291134.1| preprotein translocase, SecE subunit [Peptoniphilus lacrimalis 315-B] preprotein translocase, SecE subunit [Peptoniphilus sp. oral taxon 836 str. F0141] preprotein translocase, SecE subunit [Peptoniphilus lacrimalis 315-B] preprotein translocase, SecE subunit [Peptoniphilus sp. oral taxon 836 str. F0141] # 1 71 1 71 71 125 100.0 1e-27 MATNKVAKTDEKKGGLGKYFRGVKSEFKKVVWPSKKQIVQYSLIVIGVSIACALLLSLYD RFIVFLLKPIY >gi|281297591|gb|ADDO01000041.1| GENE 50 45358 - 45897 773 179 aa, chain + ## HITS:1 COG:CAC3149 KEGG:ns NR:ns ## COG: CAC3149 COG0250 # Protein_GI_number: 15896397 # Func_class: K Transcription # Function: Transcription antiterminator # Organism: Clostridium acetobutylicum # 9 178 3 171 173 190 57.0 1e-48 MDEKDITKDAAKWYVIHTYSGYENKVKDTMEAMVANRKMEDLILDIRVPMENYVETKDGL SKAKERKMFPSYVLVKMIMNDETWYLVRNTRGVTGFVGPASKPVPLSEEEVLLLGVTDNK ELFGNYEIGETVRVISGPFNELVGIIDSFNYEKGKVKVSISMFGRDTLVELDFNQIIKA >gi|281297591|gb|ADDO01000041.1| GENE 51 45940 - 46365 611 141 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169824236|ref|YP_001691847.1| 50S ribosomal protein L11 [Finegoldia magna ATCC 29328] # 1 141 1 141 141 239 85 3e-62 MAKKVIALVKLQIPAGKATPAPPVGTALGPHGVNIMQFTKEFNAKTADQAGMIIPVVLTV YQDRSFTFITKTPPAPVLIKKALGLKSASGEPNKKKVGKLKKAQVEEIAKTKMPDLNAAS LEAAMSMIKGTARSMGIEVED >gi|281297591|gb|ADDO01000041.1| GENE 52 46405 - 47106 894 233 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|118444059|ref|YP_877187.1| 50S ribosomal protein L1 [Clostridium novyi NT] # 1 232 1 232 232 348 70 4e-95 MPKRGKKYLEALKLIEKEKLYDVDEALSLVLKTASAKFDETVELAMRLGVDPRHADQQVR GTVVLPNGTGKSVKVLVLAKGDKVKEALEAGADYAGGDEYVEKIKNENWFDFDVVIATPD MMGVVGKIGRILGPKGLMPNPKSGTVTFELANAIKDTKAGKVEYRVDKAAIINVPIGKVS FGQEKLAENFKTISEAVIKAKPASAKGKYLKSVTVSTTMGPGIRLNGEKLMAR >gi|281297591|gb|ADDO01000041.1| GENE 53 47270 - 48469 1606 399 aa, chain - ## HITS:1 COG:HI1554 KEGG:ns NR:ns ## COG: HI1554 COG0161 # Protein_GI_number: 16273454 # Func_class: H Coenzyme transport and metabolism # Function: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase # Organism: Haemophilus influenzae # 2 393 15 420 430 297 38.0 2e-80 MIWYPYEQMKTMKKPIKVIDAKGVYLYTQDTKLIDSVSSWWSVMFGYKNKELNQAIKDQV DKFSHIMLGGLTHEPVEKLSNKLKEYLPGDLDYPFFSDSGSVAVEVALKMALQYYINQGR TEKRMVMSLTNSYHGDTFKTMEVGDDEDYHFILKAYGKSPYVVHVDTQIPALEEAFKKYG EKLNSFIVEPLLQGAGGMKMYDISFLKRARELCDQYDVVLIFDEVATGFGKTGNRFVSDL VLPDILVLGKALTAGYMGHAVTVANKKIYYGFYDDDPSHALMHGPTFMANPLACCVALKA IEIFERDKYMDKVKHLEEVAKEEMKGFCDDRIKEVRIMGDVVCIEVKDAKTLDGYQDFAY KKGVFARPFLNCLYSMPPMIIKDDELKKILKTMKEWFEK >gi|281297591|gb|ADDO01000041.1| GENE 54 48479 - 49165 859 228 aa, chain - ## HITS:1 COG:CAC1361 KEGG:ns NR:ns ## COG: CAC1361 COG0132 # Protein_GI_number: 15894640 # Func_class: H Coenzyme transport and metabolism # Function: Dethiobiotin synthetase # Organism: Clostridium acetobutylicum # 3 207 2 204 240 160 42.0 3e-39 MGKSIFITGTGTDIGKTYVSGLIVKKLKEYGFKSSYYKAAMSGNIRDEKANLIPGDAKFV KDISGIDQPLNEMCHYVYENAVSPHLASKIEGNPVDLDVAVERFNEVKEKSDFVTVEGSG GILCPLRFDHEYKFSLEDFIKKCNLSCILVADAGLGTINNVVLTHYYMKNNGLKLKGIIF NNYIPNDIMQEDNIKMCKYLTGLNVLACVKKEDKDIDIKKEDFEKIYE >gi|281297591|gb|ADDO01000041.1| GENE 55 49167 - 49730 189 187 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764517|ref|ZP_02171573.1| ribosomal protein L32 [Bacillus selenitireducens MLS10] # 9 167 8 168 190 77 31 2e-13 MKNKNVRDLVLCSLFVALIAIGAFIKIPIPVVPFTLQFLFTMLAGLLLGPSLGFLSVLVY IILGLIGLPIFTEGGGIFYIFKPSFGYILGFAFGAYLTGYLAHKDNNPSIKRLLFANFSG LIVVYSFGMIYYYFISNYYLNNPIGVWTLILYCFILAVPGDIFLCIIGGLLAKRLIPILS KNFNYRR >gi|281297591|gb|ADDO01000041.1| GENE 56 49996 - 50529 399 177 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227486741|ref|ZP_03917057.1| ribosomal protein L10 [Anaerococcus lactolyticus ATCC 51172] # 1 177 1 182 182 158 48 1e-37 MKEEKLQAKQAVVSEIKEKIDKAQSIVLLNYRGLNVEEVTELRNKYREANVEYKVYKNTM MKRAFKELGYEELDEFLKGPSAIALGMADPASAAKISSDFAKDHEALEIKTGIVDGKVLS LAEVDALAKLPSKEVLIAQVLGGLNAPIQGLANVLNGTIRSLAIVLNAIAEKQGDAA >gi|281297591|gb|ADDO01000041.1| GENE 57 50561 - 50941 423 126 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227525592|ref|ZP_03955641.1| ribosomal protein L7/L12 [Lactobacillus jensenii JV-V16] # 1 126 1 120 120 167 70 2e-40 MSEKTQKLIEEIKELTVLELSEVVKALEEEFGVSAAAPVAAAAPVAGGAAPAAAEEKTEF DVVITEAGQEKVKVIKVVKDITGLGLKDAKALVDGAPKPVKEGVSQDEANDIKAKLEEAG ATVEVK >gi|281297591|gb|ADDO01000041.1| GENE 58 51010 - 52002 1173 330 aa, chain - ## HITS:1 COG:mll5861 KEGG:ns NR:ns ## COG: mll5861 COG2025 # Protein_GI_number: 13474881 # Func_class: C Energy production and conversion # Function: Electron transfer flavoprotein, alpha subunit # Organism: Mesorhizobium loti # 4 326 30 356 368 217 35.0 3e-56 MSNNIWVVIENAENDLTELSKEMMNKAKAIAKTLNKKLVAVVSGYNEEEICNKSIAYGAD LVLNCNHKLLKDYTTLPYTKVFNEIIDKYNPYLVIFPASVNGRDLAGRLCAKKNLGLVAE CSDLKLDGEDIKFIRPTFDGKLFSDIRVTTKPMFATIGHGAFSPAKYDNENKGEIIEEKV ELTDADILTEILSKIPSQVKESELIFENAKIIVSGGMGLVKSKNWHLIEEFADALGASVG ASKPICDLGICSSDFQVGVTGKNVSPDIYIAVGISGAIQHINGIKKSKLIIAINSDPNAP IFQIAHYGIVADLFDILPKLTEKINKEKNA >gi|281297591|gb|ADDO01000041.1| GENE 59 52002 - 52796 851 264 aa, chain - ## HITS:1 COG:CAC2710 KEGG:ns NR:ns ## COG: CAC2710 COG2086 # Protein_GI_number: 15895967 # Func_class: C Energy production and conversion # Function: Electron transfer flavoprotein, beta subunit # Organism: Clostridium acetobutylicum # 1 260 1 256 259 176 39.0 3e-44 MNLLVCIKVVPDIGKAKIDPITNNLIREGLKMIINPSDLCALKFALNIKDNTQEDVNITV ISMGPPQAEDAIRETIQMGADRGFLIMGLEFRGSDTLATSYTLSQAIKSLGNFDLVLTGD KTLDGDTGQIGPELSEHLSFNLFSFVKKLSYEDGYFKATRLTKNGEEIVKSKAPLLVTAL KDSASRPSKFSRGREDIAKNAEIKVFNAQNIELDNERIGQTGSHTIVKEIFPPKKEEVGR KIEGDINHQVDELISILKDKGVLN >gi|281297591|gb|ADDO01000041.1| GENE 60 53302 - 53364 62 20 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MEKSDIDSGGDIFKLQPFKH >gi|281297591|gb|ADDO01000041.1| GENE 61 53407 - 53724 411 105 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|220928206|ref|YP_002505115.1| ribosomal protein S10 [Clostridium cellulolyticum H10] # 1 105 1 103 103 162 76 4e-39 MSNKGKQKIRIKLKAYDHELLDNSATRIAEAAKQTGASVSGPIPLPTEREVVTILRAVHK YKDSREQFEQRTHKRLIDIVNPTQKTVDSLMKLNLPAGVDIEIKL >gi|281297591|gb|ADDO01000041.1| GENE 62 53778 - 54407 648 209 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|158319543|ref|YP_001512050.1| ribosomal protein L3 [Alkaliphilus oremlandii OhILAs] # 1 208 1 208 210 254 56 1e-66 MKYLIGRKIGMTQIFDEKGIVTPVSVIEVEPNIVTQKKTPENDGYSAIQISAGAVKENKV NKPTKGHFDKAGVSYKKYLSEFLTDDVDSYNLGDEIKVDIFEVGEHVDVIGTSKGKGTAG IIKRHGFGRGRETHGSKFHRMPGGMGAASYPGKVFKNHRMAGKMGNERVTVQNLEIVRID ASKNLILVKGAIPGNKKSKVFVKETVKKA >gi|281297591|gb|ADDO01000041.1| GENE 63 54419 - 55042 730 207 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169823853|ref|YP_001691464.1| 50S ribosomal protein L4 [Finegoldia magna ATCC 29328] # 1 206 1 206 207 285 70 4e-76 MAKIQMINIEGNPVSEIEVNDNIFNCDVNEHVVYLVVKNILANRRQGTHSAKTRSEVRGG GRKPWRQKGTGRARQGSIRSPQFRGGGVVFAKKPRDYSYTTPKKVRRLALKSVLTSKLQD SEIIVLDKLELNEIKTKTVVNILKDIKADKKALIVINDKNENIIRSARNIEGVKTEFVKN INVYDLLKYNSLVITKDALDTLEEVFI >gi|281297591|gb|ADDO01000041.1| GENE 64 55042 - 55329 294 95 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228580375|ref|YP_002851076.1| ribosomal protein L23 [Clostridium sp. 7_2_43FAA] # 1 95 1 95 96 117 58 2e-25 MNKYDIIRKPIVTEKSMEDMENKKYTFEVDKNATKIEIKAAVEEIFNVKVKKINTMNMQG KLKRQGAHMGRRPSWKKAIVKLTDDSEPIEFFESI >gi|281297591|gb|ADDO01000041.1| GENE 65 55342 - 56172 1089 276 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227901833|ref|ZP_04019638.1| ribosomal protein L2 [Finegoldia magna ATCC 53516] # 1 276 1 276 276 424 75 1e-117 MAIKGYKPTTPSRRKMTVSTFEELTNKKPEKSLTISLKKSTGRNSYGRITSRHRGGGVKR KYRIIDFKRDKDNIPARVAAIEYDPYRSAYIALLHYADGAKRYIIQPNGLKVGDVVESGP NADIKVGNALRLQDIPVGTTVHNIELTPGKGGQMARSAGTEAQLMAKEGKYAQLRLPSSE FRLVSLNCKATIGQVGNISHELVTLGKAGRKRYLGKRPHVRGSAMNPVDHPHGGGEGRAP VGRPSPMTPWGKKALGLKTRKKKNKTDMYIVRRRTK >gi|281297591|gb|ADDO01000041.1| GENE 66 56184 - 56468 418 94 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169823856|ref|YP_001691467.1| 30S ribosomal protein S19 [Finegoldia magna ATCC 29328] # 1 94 1 93 94 165 80 7e-40 MSRSLKKGPFADEHLLKKIDELNKNNDKKVIKTWSRRSTIFPEFVSHTIAVHDGRKHVPV YITEDMVGHKLGEFVPTRTFKGHTAKSEKTTTMK >gi|281297591|gb|ADDO01000041.1| GENE 67 56482 - 56817 429 111 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228002916|ref|ZP_04049908.1| LSU ribosomal protein L22P [Anaerococcus prevotii DSM 20548] # 1 111 1 111 115 169 79 4e-41 MEAKAIAKYVRISPLKVNYICDEIRGKQVDEALSILKFTNKKGAYELYKVLHSAVANAEN NLNLDRSLLYVKKAYANDGPTMKRFHPKAKGMAYPILKRSSHIGVVVAEKE >gi|281297591|gb|ADDO01000041.1| GENE 68 56829 - 57611 886 260 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227901830|ref|ZP_04019635.1| ribosomal protein S3 [Finegoldia magna ATCC 53516] # 1 247 1 244 244 345 69 4e-94 MGQKVNPHGLRVGVIKNWDSKWYANKKNFSELLVEDNEIRKYIKKKLYVAGISKIEIERA ANRVKVSIYTAKPGVVIGRGGAGVEELRKEVEKLTGKSIVLNVEEVKNPDIDAQLVSESI AEALERRVSFRRAMKQAIQRTMRAGALGIKTAVAGRLGGADMARTEGYSEGTIPLQTLRA DIDYGFSEADTTYGKLGVKVWLYKGEILPEFKEERRRPRDNRDKDKDNKKRKRRNNNKDG KRNFKRNNNRDKNKESNKKS >gi|281297591|gb|ADDO01000041.1| GENE 69 57632 - 58060 612 142 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227501141|ref|ZP_03931190.1| ribosomal protein L16 [Anaerococcus tetradius ATCC 35098] # 1 134 1 134 142 240 85 2e-62 MLMPKRVKYRRVHRGRMKGKAQRGNTLAYGEYGIKALEPAWITSNQIEAARRAMTRYIRR GGNIWIKIFPDKPVSEKPAETRMGSGKGAPEYWVAVVKPGRVLFEMSGVSEEVAREAMRL ASMKLPIKTKFVKKEDGDSNEG >gi|281297591|gb|ADDO01000041.1| GENE 70 58050 - 58259 228 69 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169823860|ref|YP_001691471.1| 50S ribosomal protein L29 [Finegoldia magna ATCC 29328] # 1 67 1 67 68 92 68 7e-18 MKVKEIRNMSSEELIKKADDLKGELFNLRFRLATGQLDNPQSIKMVKKDIARIKTIIRER QLQEGKEII >gi|281297591|gb|ADDO01000041.1| GENE 71 58261 - 58515 324 84 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|158319552|ref|YP_001512059.1| ribosomal protein S17 [Alkaliphilus oremlandii OhILAs] # 1 84 1 84 84 129 75 5e-29 MERNMRKTIVGSVVSDKMDKTIVVAVESFKTHPIYKKRYKNTKKYKAHDENNECGIGDKV RIMETRPLSKDKRFRLVKIIEKAK >gi|281297591|gb|ADDO01000041.1| GENE 72 58535 - 58903 508 122 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227501144|ref|ZP_03931193.1| ribosomal protein L14 [Anaerococcus tetradius ATCC 35098] # 1 122 1 122 122 200 82 2e-50 MIQQETRLRVADNSGARELSVIKVLGGTNRRIANIGDIVVCSVKTATPGGVVKKGSVVKA VVVRTSKGISRKDGSYISFDDNAAVVIKDDRSPVGTRIFGPVTRELRRGNFMKIISLAPE VL >gi|281297591|gb|ADDO01000041.1| GENE 73 58918 - 59226 320 102 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169823863|ref|YP_001691474.1| 50S ribosomal protein L24 [Finegoldia magna ATCC 29328] # 1 102 1 102 102 127 61 2e-28 MRIKTNDMVKVIAGKDKGKVGKVLKTFPKKDRVLVENVNMVTKHTKPQGPTKPGGIEKKA NPIHVSNVMYYDQKSGKGTKLGYRFENGKKVRFKKSDNETIK >gi|281297591|gb|ADDO01000041.1| GENE 74 59238 - 59783 696 181 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169823864|ref|YP_001691475.1| 50S ribosomal protein L5 [Finegoldia magna ATCC 29328] # 1 180 1 180 180 272 70 4e-72 MTSRLKEKYDNEVAGYLMDKFGYKNKMQVPRLEKVILNIGLGEAKDNPKVLESAINDLTV IAGQKPVVTLARKSIANFKLREGHKIGVKVTLRGQRMYDFLDKLMNVALPRVRDFRGVKA NAFDGRGNYSLGLKEQLIFPEIEYDKVDAIRGMNIAIVTTAQTDEEAKAFLEKMGMPFAK N >gi|281297591|gb|ADDO01000041.1| GENE 75 59799 - 59984 291 61 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169823865|ref|YP_001691476.1| 30S ribosomal protein S14 [Finegoldia magna ATCC 29328] # 1 61 1 61 61 116 85 4e-25 MAKKSLIAKQKRKQKFSTREYSRCKICGRPHSVLKKYGICRICFRELAYKGQIPGVKKAS W >gi|281297591|gb|ADDO01000041.1| GENE 76 60012 - 60407 519 131 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|158319557|ref|YP_001512064.1| ribosomal protein S8 [Alkaliphilus oremlandii OhILAs] # 2 131 3 132 132 204 73 1e-51 MMTDPIADMLTRIRNGNHARHKSVDIPASNIKKEIAKILLDEGYIKNYDLVEDNKQGIIK IDLKYAQSGERVISGIKRISKPGLRVYVKCEDVPKVLGGLGIAIISTSKGIITDKVAREK GVGGEVICYIW >gi|281297591|gb|ADDO01000041.1| GENE 77 60422 - 60958 607 178 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169823867|ref|YP_001691478.1| 50S ribosomal protein L6 [Finegoldia magna ATCC 29328] # 1 178 1 179 179 238 67 8e-62 MSRIGKKPIVIPKGVEVKIDKNTIEVKGPKGSLVESFDKSMTYELEDGVLTVLRPNDSKK IKALHGLTRTLIYNMIIGVTEGYKKELEIVGTGYRASKNGKKLALTLGFSHPLELEDPKG IEVEVPSANSIIIKGNNKQQVGAYAAYIREFRHPEPYKGKGIKYVDEHIRRKVGKTGK >gi|281297591|gb|ADDO01000041.1| GENE 78 60973 - 61335 417 120 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|56418657|ref|YP_145975.1| 50S ribosomal protein L18 [Geobacillus kaustophilus HTA426] # 1 120 1 120 120 165 66 9e-40 MLKKIDKNANRIKRHKRIRRHLSGTASKPRLSVFRSDAHIYAQVIDDDSMNTIVSASSLD KSLNLESTKNIEAAKAVGKDIAKKALEKGIEEVVFDRSGYIYHGRIKALAEAAREEGLKF >gi|281297591|gb|ADDO01000041.1| GENE 79 61349 - 61855 561 168 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|146297268|ref|YP_001181039.1| ribosomal protein S5 [Caldicellulosiruptor saccharolyticus DSM 8903] # 1 167 1 167 168 220 65 2e-56 MERSLINAAELDLEDKVVSINRVAKVVKGGRNFRFSALVVVGDHNGHVGVGTGKALEVPE AIRKATQDAKKHIIKVNLLKTSIPHMVIGEFGAGRVFLKPAHEGTGVIAGGAVRAVCELC GITDIRTKNQGSNNARNTVNATIEALKKLKTAESVAKLRNKSVDEILG >gi|281297591|gb|ADDO01000041.1| GENE 80 61864 - 62040 167 58 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|153952879|ref|YP_001393644.1| 50S ribosomal protein L30 [Clostridium kluyveri DSM 555] # 1 58 1 58 59 68 60 8e-11 MSTLKIKLVKSPIGKIPVHRKTIKALGLNKLGQVVEKNDTPQIRGMIKQVEYMLEVEE >gi|281297591|gb|ADDO01000041.1| GENE 81 62054 - 62503 514 149 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15896364|ref|NP_349713.1| 50S ribosomal protein L15 [Clostridium acetobutylicum ATCC 824] # 1 149 1 146 146 202 69 5e-51 MKLHDLKPAAGGGVKARKRIGRGIGSGTGKTSGRGQKGQNSRSGGGVRPGFEGGQMPLFR RLPKRGFTNIFKKQTQAVNVSDLNRFEEGTEVTKDLLIQEGLVKKSKAKDGVRILGNGEL NVKLNVKASHFSASAKEKIEACGGKAEVI >gi|281297591|gb|ADDO01000041.1| GENE 82 62503 - 63783 858 426 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163796899|ref|ZP_02190856.1| 30S ribosomal protein S11 [alpha proteobacterium BAL199] # 10 426 19 439 447 335 40 6e-91 MLSTFKNAWKIPQLRKKMLFTLFMLLLYRLGSHIAVPFMNTSVIEQLFNGANSSLFAFMD LMAGGNFRNFTIFACNIYPYVTASIVLQLLTIAIPSLEALAKEGDTGRKAIAKYTRYLAI AIAAVQAVGYTFGIFRQAVNATTYLEYFTIIISIVAGSTILIWIGEQITEHGIGNGISIL IFAGIVARFPVDIFQSIARVRAGLASSIYLWIFLVLAIAICVFVVILNEGERRIPVQYAK RVVGRKMYGGQATHIPIKVLLTGVMPIIFANSLLAIPSTVAMFTKNEATRNWITKWLSPS GGPGVVIYVLCSVILIIFFTFFYTTIQFNTVEYSKNMQQNGGFIPGIRPGKPTSEYLQRS LNRLVLPGAIALAILSVLPTILTKISNLQFNYGGTSIIIVVGVVLETTRVLEQQLLMRNY RGFLRK >gi|281297591|gb|ADDO01000041.1| GENE 83 63792 - 64433 878 213 aa, chain + ## HITS:1 COG:CAC3112 KEGG:ns NR:ns ## COG: CAC3112 COG0563 # Protein_GI_number: 15896362 # Func_class: F Nucleotide transport and metabolism # Function: Adenylate kinase and related kinases # Organism: Clostridium acetobutylicum # 1 208 1 208 215 240 56.0 1e-63 MRLVILGPPGAGKGTQADFIVKKYNIVHISTGDIFRENIKNHTKLGEKAKSYMDKGLLVP DELVIDLVEDRLAKDDCKDGFLLDGFPRTVAQGVSLDAILDRQDKSLTKVINIDVKPEIL IERAVGRRVCKSCGSTFHIKYNPPKEDGICDNCHEKLIQRDDDTENTVKTRIKVYFEQTA PLIDYYKAQDLLLNINGESDIKKVFDDIVQGLS >gi|281297591|gb|ADDO01000041.1| GENE 84 64442 - 64696 180 84 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169823874|ref|YP_001691485.1| putative 50S ribosomal protein L14e [Finegoldia magna ATCC 29328] # 1 80 1 78 94 73 47 3e-12 MERTISLERGQIVRSKKGRDEGEIFIILDIIDDKYVYLVDGKLRKLCKPKRKKVKHLYIY KAVVELDVENFNDAYIRRVLLSYS >gi|281297591|gb|ADDO01000041.1| GENE 85 64713 - 64931 275 72 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15900168|ref|NP_344772.1| translation initiation factor IF-1 [Streptococcus pneumoniae TIGR4] # 1 72 1 72 72 110 75 3e-23 MAKEDVIEVEGVVVDALPNTNFKVKLENGHIILAHISGKLRMNYIRILPGDKVTVELSPY DLTRGRITWRKK >gi|281297591|gb|ADDO01000041.1| GENE 86 64950 - 65063 193 37 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227901812|ref|ZP_04019617.1| ribosomal protein L36 [Finegoldia magna ATCC 53516] # 1 37 1 37 37 79 94 8e-14 MKVRPSVKKMCEKCKIIKRKGKVMVICENPKHKQRQG >gi|281297591|gb|ADDO01000041.1| GENE 87 65075 - 65437 455 120 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167036826|ref|YP_001664404.1| 30S ribosomal protein S13 [Thermoanaerobacter pseudethanolicus ATCC 33223] # 1 120 1 121 122 179 75 3e-44 MARIAGVDLPREKRVEIGLTYIFGIGRSRSQKILKDADVNFDTRVKDLTEAELGRIRDEI QKYHVEGDLRRDVAMNIKRLREINCYRGRRHKAGLPVRGQKTKTNARTRKGPKKLIAKKK >gi|281297591|gb|ADDO01000041.1| GENE 88 65452 - 65847 543 131 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228002936|ref|ZP_04049928.1| SSU ribosomal protein S11P [Anaerococcus prevotii DSM 20548] # 1 131 1 131 131 213 79 2e-54 MAKKQRATRVKRRARKNIEKGQAHIASTFNNTMVTLTDTNGNVISWASAGQLGFRGSRKS TPFAAQEAAAEAANKAKEHGLKSVDVYVKGPGSGREAAIRSLQASGLEVTMIKDVTPIPH NGCRPPKRRRV >gi|281297591|gb|ADDO01000041.1| GENE 89 65891 - 66838 1176 315 aa, chain + ## HITS:1 COG:BH0162 KEGG:ns NR:ns ## COG: BH0162 COG0202 # Protein_GI_number: 15612725 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, alpha subunit/40 kD subunit # Organism: Bacillus halodurans # 1 314 1 314 314 347 61.0 1e-95 MIEIEKPKITIDKLDDSGKYGKFIVEPLESGYGITIGNSLRRVLLSSLPGAAVSFINIRG VEHEFDTIPGVLEDVPEIILNVKSIVFKMENDEPVKLIIEKSGKGEITAGDIILEPSVSV VNPNHHIATLNEDADVYIEMTVEKGRGYEPSELKKDEVTQIGIIPVDSNYSPVRKVNWKV ENTRVGQRTDYDRLILEVTTDGSMKADEATSLAAKILTEHLDLFIGLINHVDEVNIMVEK EEDQSEKVKEMTVEELDLSVRSFNCLKRAGINTVGELTNKTEEDMMKVRNLGKKSLEEVV SKLQEMNLSLKTEED >gi|281297591|gb|ADDO01000041.1| GENE 90 66851 - 67192 411 113 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|242261125|ref|ZP_04805835.1| ribosomal protein L17 [Clostridium cellulovorans 743B] # 1 113 1 113 113 162 71 4e-39 MAVQRKLNRNSSHRRAMLRNLVTSLLREEKIVTTVTRAKETRRIAEKMITLGKRGDLHAR RQALAYIFDEDTVTKVFNELAEKYADRNGGYTRIIKMGPRRGDGAEVAVLELV >gi|281297591|gb|ADDO01000041.1| GENE 91 67369 - 68274 914 301 aa, chain + ## HITS:1 COG:CAC3212 KEGG:ns NR:ns ## COG: CAC3212 COG3956 # Protein_GI_number: 15896459 # Func_class: R General function prediction only # Function: Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain # Organism: Clostridium acetobutylicum # 1 300 1 316 483 130 31.0 2e-30 MINVVGLGATDENDLTYKALKIINNGKKNFLRTDKLDAVNYFKDNNISYFSFDYVYEEDE NKSFEDVYNEIVSSLLEEEKKWGEINYFVPGNPFVAEKTVEILRKKTETKITSGISFIEP ILSAVGRDAVDGLLFLDYDFNIYDLNPDMDIIITQIYNRRIASDVSLKLQEIYPPQSDVT FIKDAGLKSQYLVNCKVFELSRIEDINHRCALYIPRSERFIYGQMKKALLNFIDESNLSY DKKSFEVIKDKARDIIKNLDYSDDNSAFQFYFYAILLSELANIEGYYNKYDIFEKILEKM R >gi|281297591|gb|ADDO01000041.1| GENE 92 68420 - 68698 431 92 aa, chain + ## HITS:1 COG:CAC3211 KEGG:ns NR:ns ## COG: CAC3211 COG0776 # Protein_GI_number: 15896458 # Func_class: L Replication, recombination and repair # Function: Bacterial nucleoid DNA-binding protein # Organism: Clostridium acetobutylicum # 1 92 1 91 91 89 66.0 2e-18 MNKQELVASIATKSSLTKKDAEKALNGFLASVEEALAKGEKVQLVGFGTFEVRQRKAREG RNPRNPEEVIKIPASKAPVFRSGKALKEAVNK >gi|281297591|gb|ADDO01000041.1| GENE 93 68743 - 68985 324 80 aa, chain + ## HITS:1 COG:SA0464 KEGG:ns NR:ns ## COG: SA0464 COG1188 # Protein_GI_number: 15926183 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) # Organism: Staphylococcus aureus N315 # 1 76 1 76 87 67 50.0 6e-12 MRIDKYLKNSRIIKRRTVAKSACDKGLIKINEKIAKAGDEVVIGDIIEIKLGNKEILVKV LSVDDNVSKDEASSIYERID >gi|281297591|gb|ADDO01000041.1| GENE 94 68987 - 69154 77 55 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSNLSNISFIFLFATGIIITFLSLRKNEDLSLIFIFIVLIIVIFYMLRDIYVKNF >gi|281297591|gb|ADDO01000041.1| GENE 95 69209 - 69523 354 104 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282882536|ref|ZP_06291157.1| ## NR: gi|282882536|ref|ZP_06291157.1| cell division protein FtsB [Peptoniphilus lacrimalis 315-B] septum formation initiator [Peptoniphilus sp. oral taxon 836 str. F0141] cell division protein FtsB [Peptoniphilus lacrimalis 315-B] septum formation initiator [Peptoniphilus sp. oral taxon 836 str. F0141] # 1 104 1 104 104 174 100.0 3e-42 MRTRRKSFPLIYAIIILITLIYFAFSMSKSIGLRNQKLEILSENRREISSLNNDIKNLKR EINNADTIEFVEKVARDDLGMVKPREIVYIDKSKGSSFNLHRQN >gi|281297591|gb|ADDO01000041.1| GENE 96 69542 - 69934 304 130 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15896453|ref|NP_349802.1| hypothetical protein CAC3206 [Clostridium acetobutylicum ATCC 824] # 1 123 1 128 135 121 49 1e-26 MSLAVGDVVEGVVSNLTKFGAFVNLDSGLTGLVHISEISDTFVKDVSDVLETGQNVKVKV LSIDDKGKIALSIKACIEKKPVQINTEKVGINTEFEDKLAKFLKDSNEKLEQKRSREKQK TKGNRSRNRF >gi|281297591|gb|ADDO01000041.1| GENE 97 69993 - 71315 1338 440 aa, chain + ## HITS:1 COG:CAC3204 KEGG:ns NR:ns ## COG: CAC3204 COG0037 # Protein_GI_number: 15896451 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Predicted ATPase of the PP-loop superfamily implicated in cell cycle control # Organism: Clostridium acetobutylicum # 7 436 7 458 461 227 36.0 3e-59 MDKIFYDKIKEEKTIEKNDRLLLAISGGPDSMYLLYNVIDLKKEFNLDLLVCHVNHGIRE NAKNDENFVIDICKKFNINYNIKHVNMNEYAKENNMSAEEAGRFLRYEFFKENADGRKIL TAHNLNDQAETILTRIFRGTGVKGLAGILQFNNNIVRPILNIPRYQIEDYLNKNNLKYVI DETNLKSDYTRNRIRIELIPYIEKYFNPNIVNTLNRLSINAREEKIYLDTIIEKEYRNSF KDDCFNVTYLKTLDKFICQEVIKKFLEENFPSFVTRKIIIDIYMLLFKNSGTSIDISKNI RARISYDKLLIEKYQKINYESLYLNCGDNHSDFGIITLKDNIYKKDRFNVSIDKDKIKGN LYVRSRKKGDRFTPMGMKSNKKLKDFFIDKKIDREKRDSIGLICDDENIIWVIGYGINDK YKITEFSKNILNMEVKDDRN >gi|281297591|gb|ADDO01000041.1| GENE 98 71302 - 71835 590 177 aa, chain + ## HITS:1 COG:BH0084 KEGG:ns NR:ns ## COG: BH0084 COG0634 # Protein_GI_number: 15612647 # Func_class: F Nucleotide transport and metabolism # Function: Hypoxanthine-guanine phosphoribosyltransferase # Organism: Bacillus halodurans # 3 174 4 176 179 187 57.0 6e-48 MTEIKEILFTREEIQKKVQELGKIISNDYKGKKLILVGILKGAVPFMADLMREIDLDLEY DFMDVSSYSGTTSVGEVRILKDISTHIEGKDVLFVEDIIDTGLTLSYLTDLFKSRAANSV AITTLLSKPKRRKIDIYVKYIGYEIEDKFVVGYGMDYNEKFRSLPYIGVLDESILHK >gi|281297591|gb|ADDO01000041.1| GENE 99 71851 - 73788 1324 645 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 [Rickettsia canadensis str. McKiel] # 9 610 9 606 636 514 47 1e-145 MKKRMGGTIFYIVLIILLFATIRYFRPPEQTVEEKSVTEFVQELKNNNVVSITMEEGTNT IAHVKLKDDTRFITLLPDSASQDLFNSYISDKVSKGEIKYNLQPKKVTPFYFDLIPSFLM IGALIFIWYRIMQQNSGGGKMSSFGKSKAKLINKDSKKLITFKDVAGLVEEKEELGEIVD FLKNPKRFTEMGARIPKGVLLVGPPGTGKTYLSRAVAGEAGVPFFIMSGSDFVEMFVGVG ASRVRDLFEAAKKNAPCIIFIDEIDAVGRRRGAGLGGGHDEREQTLNQLLVEMDGFGTNE GVIVMAATNRQDILDPALLRPGRFDRMVYVGKPDIRAREAVLKVHSKGKKLAEDVDLRLI ARRTPGFTPADLENLMNESALLAARNGNARITMEDVNEASIKVQAGPAKKSRVVSDKERK LTAVHESGHAIVSQFLPEEHPVHMITIIPRGQAGGFTAYAPEDDASFVTKGMMESQIVSL LGGRVAESLVLDDISTGASNDIQRATQIARSMVTTYGMSDRLGTINYDSGDNEIFVGRDL GRERPYSERTAAEIDEEVARIINEAYIKCRNILKENMPKLLRLSNALLEKETVYRKEFLE IFYADDEKNKEIVKKQEDQQEESILQDSALDKDTFQEKDSPLEDK >gi|281297591|gb|ADDO01000041.1| GENE 100 74109 - 74210 67 33 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MRIRAIFYIKISVRELLPNRYFRPLKFNLNIDR >gi|281297591|gb|ADDO01000041.1| GENE 101 74294 - 75286 937 330 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282882485|ref|ZP_06291106.1| ## NR: gi|282882485|ref|ZP_06291106.1| putative lipoprotein [Peptoniphilus lacrimalis 315-B] putative lipoprotein [Peptoniphilus lacrimalis 315-B] # 1 330 1 330 330 608 100.0 1e-172 MKNKYFYKITLFLAIILLCACSNNAKRAKAGQEAKENKEFLDSYDFIRLNKTRLGLTDPR GFVVVDNKIYMVDAGVNSVNIFDLDFKPIKKLEGKDMQLKKPADIDFYEDKFYIADIKDN NIKIYDKDFKLINSINLREKHDMNYGEPTYIKVNEKGIYIAYECVIKEAAFIDKYFEDGR QQIGKLFWGSLTKGGNDIFAANRGTHFEGPFMNFKHVEGFKSGKANLLKIEDNKVNELTK LEEGLMPLALCANEENIYILTSDCKINEFSKDGEFKRTLFSDSYKPKFDVEKSSNYMQIY KDRLYINFVKYNTDDESKNQAVENILVLDI >gi|281297591|gb|ADDO01000041.1| GENE 102 75390 - 75512 63 40 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MQSNNNMNLLDFKDIIFDSFYEDNYFLYLSSVKKMDTCLN >gi|281297591|gb|ADDO01000041.1| GENE 103 75736 - 76221 389 161 aa, chain + ## HITS:1 COG:AF1696 KEGG:ns NR:ns ## COG: AF1696 COG2426 # Protein_GI_number: 11499286 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Archaeoglobus fulgidus # 26 161 2 137 137 59 37.0 3e-09 MFDSLAQIIEMYLPRELAVMVLAMFPYLELKGAIPFGISLNLKYITSFTFAFLGSIIPSP FIIFFVNKIIKKIKKKDKFSVYIKKLEARIRIKGSKIKNSGILGLFIFVLIPLPGTGVWT GSLLAGLFNLNTKISLLVIILGNFFAGIIITLLSSSIHKLL >gi|281297591|gb|ADDO01000041.1| GENE 104 76269 - 78791 3110 840 aa, chain - ## HITS:1 COG:CAC2301 KEGG:ns NR:ns ## COG: CAC2301 COG0744 # Protein_GI_number: 15895568 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase (penicillin-binding protein) # Organism: Clostridium acetobutylicum # 25 772 35 710 809 303 31.0 1e-81 MNKHRNNKPHGIIKLSSIFKILLLLILAVIIFVGTIFTTLVLGIFKKSPEIDPTNYRTIM AETSRIYSDDDQLIQTLVDDEFSEFVPMDKFPKYLSNAFVAIEDERFYEHNAVDFRRVLG ALVHDLKTRSMEQGASTITMQLAKNLYTSSSKSIPRKLTDIYYAYQIEANLTKPQILEAY LNCASFSKGTIGVGAAAHSFFDKDVSDLSLAECALLAGVTNRPEEFTPYNYAEIQADDDP ENVQVVLRPNVNSNYENPENLINFSEKLMELGKIDSFDLIQIKNNTYIPYKAVFNPNAKT RQARVLKKMFEQKLISEDDYNKALNEDITIKIGKRREYGISSFYTDLVQKEVKGILLKLG YSEEEAHNKLFNGGLKIYTPMNMEIQKILEETVADPQYYRGSFTDKAGVVQPQVACVIID QKTHEVKALVGGRGVGGGQLLNRATVTRQPGSSIKPISVYLTAFNNGTTAGDVFLDSPIP KSAGFNNPPRNNANSYRGWTTVRNLVIRSSNVGAFQVLRDISVDKNSKSNKFSTYPKVYN DEESINKAVDTLESIGITSIVKPDPSKPNTILTNDMSFSPLALGGMTHGISPLQMAGAYT TLADEGKYSKPILVSKILSNNGDTIYKADVDEKEITSKQNAYILTDILKDVVKRGTGRNA SFRGMPVAGKTGTTSDKRDVWFCGYTPYYTASVWIGCDKNQTLHFGSDRAAYLWKEIMKK VHEGLDDKDFEEPDGIYTKYVNGRRELFADGTEPHYTSKLSWDDNDDDEESQKPKKKKSD NNNNENSNDENSHKKIKRRKSDNDNNVNSNDENSHKKRKRRKSDNNNNVNSNSNNKDKKN >gi|281297591|gb|ADDO01000041.1| GENE 105 78934 - 79467 261 177 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764517|ref|ZP_02171573.1| ribosomal protein L32 [Bacillus selenitireducens MLS10] # 1 175 1 175 190 105 32 1e-21 MRIKTKDLTKTALLAALIAIGAFISIPIGPIPFTLQNFFVFMAGLLLLPEYAALSVLSYV LLGLVGLPIFSGFKGGINYIFSPTFGFLIAFIIGAFVISKLAHGKTKFTEILIALIIGEV IFYAIGLPYMYVILTKVVGTPMTASKVFTVGMIPFLIPDLGKAVIAALIAPKIRRAL >gi|281297591|gb|ADDO01000041.1| GENE 106 79586 - 80359 812 257 aa, chain + ## HITS:1 COG:BH0086 KEGG:ns NR:ns ## COG: BH0086 COG1521 # Protein_GI_number: 15612649 # Func_class: K Transcription # Function: Putative transcriptional regulator, homolog of Bvg accessory factor # Organism: Bacillus halodurans # 1 256 1 253 254 246 47.0 4e-65 MLLVIDVGNTTIVYGVYKDNELVHDFRISTDKIRTSDEYGLIFMNSLTHSNIDPSVIYDV IISSVVPNLTHTLSSMSIKFFNKKPTFVSSELKLGLNINYDNPKEVGADRIVNAVAVIKL YKIPAIIIDIGTAMTFCIIDEDKNYLGGMILPGIGISSEALFQRTSKLPKIEIIKPEVLI SPNTVGAIQSGLYYGYTTMLDGIIEKILENKNWRNDEVSIVATGGFSNLLCSDSKYNIII NRDLTLEGLKIIYDMNN >gi|281297591|gb|ADDO01000041.1| GENE 107 80368 - 81300 355 310 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|145640649|ref|ZP_01796232.1| ribosomal protein L11 methyltransferase [Haemophilus influenzae R3021] # 3 305 38 343 353 141 27 1e-32 MIKFFMAPMAGYTDRAFRQLIYENGLDHAVTEMVSARALCFNDRKTLELLKKFPGEKNTG VQIFASDVESISKASYLLNDFDFSYIDINMGCPAPKIVKNGCGSALIKNPNLVYELVKGA VKNSNKKISIKTRKSFDNTLSLDIIRAAQDAGAFAVTVHPRSREEYYKNKSDWQYLIKIK KFLTIPLIGNGDILTVEDALYKIKKYDVDGIAIGRGAIENPLIFSQIKKALKGEKYEELN FNQRIDILLRHLYLEVNYKGQRQAILNMRKTYAYYLKNLKNSKEIRNKLNVENDYTNVVK ILEEYREQMR >gi|281297591|gb|ADDO01000041.1| GENE 108 81409 - 81882 677 157 aa, chain + ## HITS:1 COG:CAC3198 KEGG:ns NR:ns ## COG: CAC3198 COG0782 # Protein_GI_number: 15896445 # Func_class: K Transcription # Function: Transcription elongation factor # Organism: Clostridium acetobutylicum # 2 155 4 157 158 162 62.0 2e-40 MDKDIFFTPEGLEKIENEIEYLKTVRRKEVAERIKVALGYGDLSENSEYDEAKNEQAYVE ERIAKLEMMARNAKVIDEKDLNNDMVNVGSTVVVKDLDSGDEDEYTIVGSAEADPLSGKI SNESPVGAGLIGLKVGDITEIEIPDGIIKYKVCAISF >gi|281297591|gb|ADDO01000041.1| GENE 109 81891 - 83804 2214 637 aa, chain + ## HITS:1 COG:CAC3197 KEGG:ns NR:ns ## COG: CAC3197 COG1190 # Protein_GI_number: 15896444 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Lysyl-tRNA synthetase (class II) # Organism: Clostridium acetobutylicum # 9 489 26 510 515 548 57.0 1e-155 MKNTNKDNLNEILVMRRQKLEELRKENKDPFIFEKYDVDSYSKDIQDNFEEFDGKDVCIA GRVMSKRRHGKICFLDLQDYKGRIQVFARKDVLLENYEDVKGLDMGDIIGVKGKVFKTEA GEVTVNAEKLDLLSKSLQILPEKFHGLKDPDLRYRQRYVDLIVNPEIKEVFLKRTKIIKA IRQYLDEKGFIEVETPILGTVAGGANARPFLTHHNTLDIDMQLRIANELFLKRLIVGGFD KVYEMGKMFRNEGMDTRHNPEFTNIELYQAYVDMDEMMAITENIFEYAAQKVLGTDKITY QGTEISLKAPWRRMSMIEAVKEYAGVDFDKVETDEQAQQLAKEKGVEVEEGSSWGKILSE FFETFCEEKLVQPTFITGHPVDISPLAKKDPKDKRLTRRFEAFINTWEFANAFSELNDPI DQRERFEAQVREHEKGDEEAHPMDSDFINAIEVGLPPTGGLGIGVDRMIMLLTDQPSIRD IILFPTMKPIGKEKSENEDLSKETDNKPKIEKIDLSKVKVEPLFEDMVDFDTFSKSDFRV VKVKNCEEVPKSKKLLKFTLDDGSGKERTILSGIKEYYSAEELIGKTLLAICNLPPRKMM GIESEGMIISAICEYDGEEKLNLIMLDNNIPAGSKLY >gi|281297591|gb|ADDO01000041.1| GENE 110 84683 - 85099 506 138 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227500047|ref|ZP_03930118.1| ## NR: gi|227500047|ref|ZP_03930118.1| conserved hypothetical protein [Anaerococcus tetradius ATCC 35098] conserved hypothetical protein [Anaerococcus tetradius ATCC 35098] # 1 138 1 138 138 241 99.0 2e-62 MKNKVSIREVVATKIIIAILIAGYYWLWSRSDYQPEYQQFSSYWGFILFLMLIVHYFRVK KYKKEYFDEFAEKNLHRCDSICLKIFCVLMVIIAYLGGILGHVNAISTALMGWLIIGTVI TITILRTIMFIIMDSKGV >gi|281297591|gb|ADDO01000041.1| GENE 111 85102 - 85305 320 67 aa, chain + ## HITS:1 COG:AF1793 KEGG:ns NR:ns ## COG: AF1793 COG1476 # Protein_GI_number: 11499382 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Archaeoglobus fulgidus # 5 67 3 65 70 67 57.0 5e-12 MALITKVKEYREKKKYKQSELAEMVNARRETIVHLENGKYNPSLKLAMDIAKVFDVSVED LFEFTDD >gi|281297591|gb|ADDO01000041.1| GENE 112 85335 - 85760 610 141 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282882515|ref|ZP_06291136.1| ## NR: gi|282882515|ref|ZP_06291136.1| hypothetical protein HMPREF0628_0341 [Peptoniphilus lacrimalis 315-B] hypothetical protein HMPREF0628_0341 [Peptoniphilus lacrimalis 315-B] # 1 141 1 141 141 252 100.0 7e-66 MQFTGLQRDDIDFDTVEDLDKYDRKKYLAPISVINLKKTPGKTTSNDSEIDKFAKDDREF IKNQVEIYRPDLIICGGTGDIFIKNILNLDTSSWTYVSDYLSYLIYNDSIIVKTYHPACR KSKKDLFENIVSPIRDILNNK >gi|281297591|gb|ADDO01000041.1| GENE 113 86530 - 86727 86 65 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVKQKYLAILKAKIIEGLYLPFSKEPIVCLDTSRIEANSSCVIPFDFLISSSLFFTLNHL LQMTS >gi|281297591|gb|ADDO01000041.1| GENE 114 86763 - 87203 498 146 aa, chain + ## HITS:1 COG:no KEGG:Cbei_3550 NR:ns ## KEGG: Cbei_3550 # Name: not_defined # Def: hypothetical protein # Organism: C.beijerinckii # Pathway: not_defined # 1 146 1 143 143 117 42.0 2e-25 MKKNRNVIKDWFLTFLGIGLVVVGFLFHKNSVSTDKMIVTIPYIFIGVGCGIFGHFMGNL IKYFSTKNHEELERQIQIDKNDERNILIAEKSKAKAYDLMIYLFASILIIFSLMGVDKLA IIMMVAIYLSIQIYALYWRSKFERKM >gi|281297591|gb|ADDO01000041.1| GENE 115 87221 - 87499 246 92 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282882454|ref|ZP_06291075.1| ## NR: gi|282882454|ref|ZP_06291075.1| conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] # 1 92 1 92 92 122 100.0 1e-26 MNKKILLVIIIVISLGLGIYGYKVLPDMVTVQIDISGNPSNIFPKILAVVSPILLSIGGG LGYYFSKEKEKKYLILSVIGLLISVITLIFNR >gi|281297591|gb|ADDO01000041.1| GENE 116 87703 - 87792 83 29 aa, chain + ## HITS:1 COG:no KEGG:SPAP_0869 NR:ns ## KEGG: SPAP_0869 # Name: not_defined # Def: type IV secretory pathway protein VirD4 # Organism: S.pneumoniae_AP200 # Pathway: Bacterial secretion system [PATH:snp03070] # 1 29 146 174 603 63 100.0 4e-09 MNSRPKNPKYARNKNVLVIGGSGSGKTRF >gi|281297591|gb|ADDO01000041.1| GENE 117 87808 - 87981 234 57 aa, chain + ## HITS:1 COG:no KEGG:Apre_1805 NR:ns ## KEGG: Apre_1805 # Name: not_defined # Def: TraG family protein # Organism: A.prevotii # Pathway: Bacterial secretion system [PATH:apr03070] # 1 55 176 230 598 107 94.0 2e-22 MQMHSSYVVTDPKGTLVLECGKMLYENGYDIKILNTINFKKSMKYNPFAYLKVKKIF >gi|281297591|gb|ADDO01000041.1| GENE 118 88277 - 88471 181 64 aa, chain + ## HITS:1 COG:no KEGG:FMG_0968 NR:ns ## KEGG: FMG_0968 # Name: not_defined # Def: putative plasmid transfer factor # Organism: F.magna # Pathway: Bacterial secretion system [PATH:fma03070] # 1 64 176 239 239 118 95.0 9e-26 MDGGTCIYQLRGVRPFLSDKFDITKHKNYKLLEDYDKKNLFDVEEYLKNKDKIKINRNSL ITRL >gi|281297591|gb|ADDO01000041.1| GENE 119 88535 - 89053 589 172 aa, chain + ## HITS:1 COG:SP0939 KEGG:ns NR:ns ## COG: SP0939 COG4283 # Protein_GI_number: 15900819 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 1 172 1 172 172 249 82.0 1e-66 MRSYESKEELKNEIKKTFEKYISEFDNIPEELKDKRLEEVDRIPAENLAYQVGWTTLVLK WEEDEKKGIDVKTPSDKFKWNQLGELYQWFTDTYAHKSLYELKEQLTENVKKIYLMIDEL TDEELFKPHMRKWADEATKTATWEVYKFLHVNTVAPFGTFRTKIRKWKKLAL >gi|281297591|gb|ADDO01000041.1| GENE 120 89162 - 89309 129 49 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227500080|ref|ZP_03930151.1| ## NR: gi|227500080|ref|ZP_03930151.1| ABC superfamily ATP binding cassette transporter, ABC protein [Anaerococcus tetradius ATCC 35098] ABC superfamily ATP binding cassette transporter, ABC protein [Anaerococcus tetradius ATCC 35098] # 1 49 1 49 520 89 100.0 7e-17 MIYIDKLKKEVGTRELFFIEKLSINEDEKIGLIGNNGVGKTTLFRILLG Prediction of potential genes in microbial genomes Time: Mon Jul 18 12:30:32 2011 Seq name: gi|281297587|gb|ADDO01000042.1| Peptoniphilus lacrimalis 315-B contig00001, whole genome shotgun sequence Length of sequence - 6078 bp Number of predicted genes - 4, with homology - 3 Number of transcription units - 3, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 2419 2621 ## gi|282882565|ref|ZP_06291185.1| iron Transport-associated domain superfamily - Prom 2453 - 2512 2.9 - Term 2438 - 2496 12.4 2 2 Op 1 . - CDS 2517 - 3134 876 ## gi|282882566|ref|ZP_06291186.1| conserved hypothetical protein 3 2 Op 2 . - CDS 3150 - 5795 2368 ## gi|282882567|ref|ZP_06291187.1| hypothetical protein HMPREF0628_0003 - Prom 5915 - 5974 12.2 4 3 Tu 1 . + CDS 5773 - 5964 117 ## + Term 5991 - 6042 6.4 Predicted protein(s) >gi|281297587|gb|ADDO01000042.1| GENE 1 1 - 2419 2621 806 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282882565|ref|ZP_06291185.1| ## NR: gi|282882565|ref|ZP_06291185.1| iron Transport-associated domain superfamily [Peptoniphilus lacrimalis 315-B] iron Transport-associated domain superfamily [Peptoniphilus lacrimalis 315-B] # 1 806 1 806 806 1327 100.0 0 MKKKLWYILILFFILFPLNIFADNGIDIKNVNEVKQYYKELVPKIEGINKQESESIITEI NKCQTPSLVKGCVEDYVFKDIDKIKEYEVVKSNKKFSECKEIFDILEYALTEDVKAVEEM EKMDLLTLDYVNGKIKLFNQIYKEFVEKYNKYKKAGLNNAPLIIDNLKNGEYVVDLSIYN DITGQMLGRRLPEPKLSMMDDAVYKLGKIVVKDGKKELIIKMIPLHQKLSGLHFSGYLLN LKVKDKHEKFNPASVDSRYEDYEDSLLKEFRKDANERYPKVIRLPLDNMETKTWEMYRDF KTKKNIEKYKELYNKKYTDAKSIQVRVFVPIMEHIQKDMGDQFAKPTIFTNSIEKYNPGN RDTLKNKIATVNINKYKDNSNKDKVDELKKILEKAKVASDSFILTDEEVQEYINKIDNLV KLLGNDASKPSPETKIDYKKLPDGEYRVIAEIRHASKQGALSMADGALVKENTKVIVSKG KYYLQIEMKALEADLNGTKFKGYLGDLLYINGEKYTQSEIINYHDDKDDYFEILKNYYKR KYSLNDKELDNLKYPKTLRYPIDIPTSEIQETNVKVFVPVMEGLSSGLGTKDAKPTILWD TLNYNLDKVKIFGKERINKIENLENKDEIIKAIDNASDIKMVFKILNDLKVPNFGNADKP NNTNNDSNSSNISELRGTLKDALNLANAVSASKGADSFLTIAIANANNVLANPKASASEI RSAINNLNTASARNNPTGSANNNANQNNGNNPFNNNSWGNNNNSWGNNSSWGNGNNGNNP FHNNSSWGGNSQWGGNNNQNSGPVTI >gi|281297587|gb|ADDO01000042.1| GENE 2 2517 - 3134 876 205 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282882566|ref|ZP_06291186.1| ## NR: gi|282882566|ref|ZP_06291186.1| conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] # 1 205 1 205 205 382 100.0 1e-104 MKNISKNLVVAGLGLAIIASGSVFAEGGKALSDNNSLFSGNLVKEASLRDNYLDYKNLPQ GEYKVNMKVMNANPNKKNHESMMNGAVIAEKTKVIVDRAGNYYLDITLQSILKEYNNEKV IGYLDWLKYYDDEGNEQPSTVLSWQSDLKGNKHPKEIKFPISKPSEIVQKEYVQVYSKAM AEKAMKGAQDACPTIDWSNFSRISR >gi|281297587|gb|ADDO01000042.1| GENE 3 3150 - 5795 2368 881 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282882567|ref|ZP_06291187.1| ## NR: gi|282882567|ref|ZP_06291187.1| hypothetical protein HMPREF0628_0003 [Peptoniphilus lacrimalis 315-B] hypothetical protein HMPREF0628_0003 [Peptoniphilus lacrimalis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gi|281297587|gb|ADDO01000042.1| GENE 4 5773 - 5964 117 63 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKLLIFFISAPLLTLKIQMPTFLLVSLFSPQFFDHLLFLSIYLKILFSPSLKHFSFIYFY EIL Prediction of potential genes in microbial genomes Time: Mon Jul 18 12:32:07 2011 Seq name: gi|281297543|gb|ADDO01000043.1| Peptoniphilus lacrimalis 315-B contig00030, whole genome shotgun sequence Length of sequence - 48446 bp Number of predicted genes - 45, with homology - 44 Number of transcription units - 19, operones - 12 average op.length - 3.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 141 - 722 439 ## TDE1596 hypothetical protein 2 1 Op 2 34/0.000 - CDS 740 - 1441 303 ## COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters 3 1 Op 3 . - CDS 1438 - 2946 205 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 4 1 Op 4 35/0.000 - CDS 2955 - 4679 220 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 5 1 Op 5 . - CDS 4680 - 6431 1128 ## COG1132 ABC-type multidrug transport system, ATPase and permease components 6 1 Op 6 . - CDS 6489 - 7127 693 ## TDE1601 TetR family transcriptional regulator - Prom 7185 - 7244 8.9 7 2 Op 1 . + CDS 7513 - 7869 297 ## MGAS10750_Spy1711 hypothetical protein 8 2 Op 2 . + CDS 7871 - 8047 96 ## Apre_1758 relaxase/mobilization nuclease family protein + Term 8095 - 8155 1.7 - Term 8038 - 8086 1.7 9 3 Tu 1 . - CDS 8128 - 8574 451 ## Apre_0680 hypothetical protein - Prom 8594 - 8653 5.4 - Term 8607 - 8640 3.1 10 4 Op 1 . - CDS 8658 - 9506 970 ## COG3708 Uncharacterized protein conserved in bacteria 11 4 Op 2 . - CDS 9585 - 9656 65 ## 12 4 Op 3 . - CDS 9653 - 10240 505 ## Apre_0679 hypothetical protein - Prom 10360 - 10419 5.1 - Term 10352 - 10384 2.4 13 5 Tu 1 . - CDS 10429 - 10614 169 ## gi|282882606|ref|ZP_06291225.1| conserved hypothetical protein - Prom 10650 - 10709 3.7 14 6 Op 1 . - CDS 10852 - 12597 1932 ## Tgr7_2850 hypothetical protein 15 6 Op 2 . - CDS 12612 - 14591 1035 ## COG3593 Predicted ATP-dependent endonuclease of the OLD family - Prom 14677 - 14736 6.2 - Term 14741 - 14790 -0.8 16 7 Op 1 . - CDS 14806 - 16362 1244 ## COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase 17 7 Op 2 . - CDS 16352 - 17179 245 ## PROTEIN SUPPORTED gi|212640476|ref|YP_002316996.1| Uncharacterized protein conserved in bacteria containing two ribosomal protein S1-like RNA-binding domains 18 7 Op 3 . - CDS 17170 - 17745 387 ## gi|282882574|ref|ZP_06291193.1| conserved hypothetical protein - Term 17768 - 17798 2.0 19 7 Op 4 . - CDS 17799 - 19205 1553 ## COG2720 Uncharacterized vancomycin resistance protein - Prom 19317 - 19376 5.3 - Term 19291 - 19338 0.5 20 8 Tu 1 . - CDS 19383 - 19664 208 ## COG1550 Uncharacterized protein conserved in bacteria - Prom 19688 - 19747 9.2 21 9 Op 1 . - CDS 19772 - 20272 598 ## COG1607 Acyl-CoA hydrolase 22 9 Op 2 8/0.250 - CDS 20265 - 21191 1293 ## COG2313 Uncharacterized enzyme involved in pigment biosynthesis 23 9 Op 3 . - CDS 21184 - 22251 1065 ## COG0524 Sugar kinases, ribokinase family - Prom 22272 - 22331 11.5 24 10 Op 1 . - CDS 22376 - 22978 546 ## COG1435 Thymidine kinase 25 10 Op 2 . - CDS 22990 - 23589 710 ## COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family 26 10 Op 3 1/0.250 - CDS 23599 - 24906 1121 ## COG0534 Na+-driven multidrug efflux pump 27 10 Op 4 . - CDS 24983 - 25633 395 ## COG1272 Predicted membrane protein, hemolysin III homolog 28 10 Op 5 1/0.250 - CDS 25636 - 26391 1193 ## COG0024 Methionine aminopeptidase 29 10 Op 6 . - CDS 26385 - 27287 1040 ## COG0457 FOG: TPR repeat 30 10 Op 7 . - CDS 27280 - 27996 399 ## gi|282882577|ref|ZP_06291196.1| conserved hypothetical protein 31 10 Op 8 . - CDS 27989 - 28546 547 ## EF1190 hypothetical protein - Prom 28573 - 28632 11.5 32 11 Tu 1 . + CDS 28658 - 29590 528 ## COG1242 Predicted Fe-S oxidoreductase - Term 29522 - 29563 6.7 33 12 Op 1 . - CDS 29591 - 30934 1655 ## COG0427 Acetyl-CoA hydrolase 34 12 Op 2 . - CDS 30983 - 33916 2037 ## COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) - Prom 33978 - 34037 6.3 - Term 34069 - 34102 4.0 35 13 Op 1 . - CDS 34116 - 37217 3799 ## COG0060 Isoleucyl-tRNA synthetase - Prom 37326 - 37385 7.0 - Term 37246 - 37276 2.0 36 13 Op 2 . - CDS 37433 - 37840 571 ## COG1959 Predicted transcriptional regulator - Prom 38003 - 38062 9.7 - Term 38064 - 38119 1.3 37 14 Op 1 . - CDS 38172 - 39443 1289 ## COG4091 Predicted homoserine dehydrogenase 38 14 Op 2 . - CDS 39454 - 40644 1020 ## COG2081 Predicted flavoproteins - Prom 40731 - 40790 17.6 + Prom 40751 - 40810 11.7 39 15 Tu 1 . + CDS 40841 - 41716 570 ## COG0668 Small-conductance mechanosensitive channel - Term 41667 - 41713 4.5 40 16 Op 1 . - CDS 41779 - 42789 1079 ## COG2008 Threonine aldolase - Prom 42902 - 42961 8.9 41 16 Op 2 . - CDS 42968 - 44002 791 ## COG2855 Predicted membrane protein - Prom 44030 - 44089 14.1 + Prom 44012 - 44071 14.7 42 17 Tu 1 . + CDS 44203 - 45096 762 ## COG0583 Transcriptional regulator + Term 45156 - 45190 1.5 + Prom 45153 - 45212 6.7 43 18 Op 1 . + CDS 45346 - 46329 953 ## COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 44 18 Op 2 . + CDS 46401 - 47045 889 ## Closa_3698 von Willebrand factor type A + Term 47073 - 47122 4.4 45 19 Tu 1 . - CDS 47294 - 48397 1392 ## BBR47_14560 hypothetical protein Predicted protein(s) >gi|281297543|gb|ADDO01000043.1| GENE 1 141 - 722 439 193 aa, chain - ## HITS:1 COG:no KEGG:TDE1596 NR:ns ## KEGG: TDE1596 # Name: not_defined # Def: hypothetical protein # Organism: T.denticola # Pathway: not_defined # 1 193 1 193 193 262 77.0 5e-69 MEEKKKFQIKDLIITALMVLCSQVLYRVLSFLFVSPYTMLLAVPVWSIIGAIAYFLVPVK TKNPWMILLFCILTGIISFYPPYIISLIIAGIIAMVIAQTKGIQNYKGLTIGYIIFCALA GFGGMCVPFLFYAEQTIKSYEKMFGSEYMETLTKLVSPMTSVIFLVVIAICALIGAIISK KLLKKHFEKAGMI >gi|281297543|gb|ADDO01000043.1| GENE 2 740 - 1441 303 233 aa, chain - ## HITS:1 COG:SP1437 KEGG:ns NR:ns ## COG: SP1437 COG0619 # Protein_GI_number: 15901289 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, permease component CbiQ and related transporters # Organism: Streptococcus pneumoniae TIGR4 # 76 216 3 133 147 68 31.0 1e-11 MNKSCKHNGIRYDPRIKLLQVLIIGILAFTLTGKKYEVLLFLSVFAYGMISGIYKTCFKF LVLYVVLFMVAEISPLFISTTIHYFILRFVTLTFSAVNMSRTSDVSEVLASLQNMKIPYY LNIPLAVILRFFPTLKQDITCIKQGIKTRGIDISFLGFLKHPFKIYEIMLIPMLMRMLCT ATELSASVETRGLGVSCKKTSYTEVKFRMLDMLLLVIMMVFYITIIIMKIKNI >gi|281297543|gb|ADDO01000043.1| GENE 3 1438 - 2946 205 502 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 272 483 7 222 311 83 29 2e-15 MENVVIDFENVSFSYGTQKEGCLKNINLKIKEGEFVLLTGQSGSGKTTVTRLINGLIPHF FEGVLTGSVKVIGDDIKTVTPGEMGKNIASIFQNPRSQFFTTNSTNEVAFALENYGIDRD EMIDRVNCSFHDFEAENLMDRDMFSLSSGEKQKIAIIAAKTLNPKIYVFDEPSANLDIPS ILKLKEIMESLKKQGHTVIISEHRLFYLKNLVDKCLIMKDGEIYRQLNHDDIENLNETDL QTYKLRTFNLSNIKYGLKDNAPISKQQSDFKVENLSFSYNANNSILNNCNLEGNFGETVA IVGHNGNGKTTLGKIMSSLLKAKSGQFFIESKLTKQKNLHKSVYFVMQDADYQLYSDSVV SELMLSSMNSIKQNDEKIENAMTLLNISSLRNRHPHSLSGGQKQRVTIAAAIASNKKILI FDEPTSGLDYENMRGVSEAINYLRKKGKLIFVISHDLEFLSKVATKAVFIENNTIIQSIS LKSIDDFETIKRFLLQNERYEE >gi|281297543|gb|ADDO01000043.1| GENE 4 2955 - 4679 220 574 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 332 552 2 226 245 89 28 4e-17 MIAIVKRILKISGKYRKNVILGLIFSGLKSFFVSLMLLAVLLIMINLEQLNMTIIMQATG IIVVSIFGRFIFQYLCDRKLSASGYEIFKDKRIEIGEKLKKAPMGYFSEKNLGTIQAVLT TTISDLEAMVMLAMNFIVGGFFQALTMTTMLLIFCFPVGMVSLIAIILGIVVLKLITKKT EKYSPIMQDSQEILVTEAIEYIRGISVLRSFKKGTDGKNKVEKAFMRKCEVDIEVNEGSA YLMKLYEMIFKVASCALVFVATVLYMNSQIPLSYALMFIVSAFLIFLELELVSDGAFLSR MLATQLNRLEYISDIPSLDDGGKEIDLDSYDIELKDVCFGYGEREILNNINLQIKSNSSL AIVGASGSGKTTLCNLIARFWDVKKGEVLIGGHNVKDFTSESLLKNISMVFQKVYLFNDT IENNIKFGNPNATHEEVIEACKKACCHEFITSLSDGYDTVVGEGGSTLSGGEKQRISIAR AILKDAPIIILDEATSSVDPENEHMLISAIKELTKNKTLISIAHRLSTVREADQIIVIDK GRIVQRGNHKELIGQDGVYEHFIEIKKQSIGWQI >gi|281297543|gb|ADDO01000043.1| GENE 5 4680 - 6431 1128 583 aa, chain - ## HITS:1 COG:SA2217 KEGG:ns NR:ns ## COG: SA2217 COG1132 # Protein_GI_number: 15928007 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Staphylococcus aureus N315 # 3 579 2 581 587 431 40.0 1e-120 MKSNNKNVISELLKYADGEKKQLYKSILLATIGELFGMIPFLAIAKLIEKIYQSELSFQT VLSITLVALGGQILKGIFTLYSTMTSHKATFHILKNIRSLVAEKMLRVPMGVMIDTPIGK FKNLIVDTISKLEDSMAHFMPEITSSLISPVLFLVLIFALDYRMGLASLLTIPLGMLGYI GMMKDYEFRSKTYTTAQNNMNSTLVEYVNGIEVIKAFNHSTSSYEKFTSAIQFFHDSTLA WWKQSWLWSAFVQAVMPSTLLGTLPVGAYLYMNSQISLSNFIVCIILPIGFIAHLMKIGK YSEQFSMVKASLDVIDEFLSTEELKRPKEKVIFDDTIYHFENVSFAYDKELVLKNINFEL KPNTVTALVGNSGSGKSTIAKLMAGFWDPTVGNIIYGGKKISEIPFEQLTSEISYVAQDN FLFNTSIKENIKMGNPTASDEEVLEVAKAASCHDFIMELEDGYNTKVGDAGGSLSGGERQ RITIARAMLKQSKVIILDEATAFADPENEYLIQSAINNLIKGKTLIVVAHRLSTITNADT ILVMKDGEIVENGTHENLVKKDGVYASLWKNYVGRLDDGKEAI >gi|281297543|gb|ADDO01000043.1| GENE 6 6489 - 7127 693 212 aa, chain - ## HITS:1 COG:no KEGG:TDE1601 NR:ns ## KEGG: TDE1601 # Name: not_defined # Def: TetR family transcriptional regulator # Organism: T.denticola # Pathway: not_defined # 1 209 1 209 215 265 69.0 9e-70 MSYSSDLTKNRILECAKEEFLDKGFEKAQVAEIAKLANVTTGAIYRHFKNKEALFFALIE EVYNYTLNVVADAEKKSEDENQKIHFELMDEKVAIEEFFSETMLFVDYMYAHFDDFKLIL ECSKGSRVENFIEEIVERYTIKNMKLIHTDFPLQINNGIKDFEVHVITKGYITSLCECVL HSIPYQDVSEYIRSIVVFQYYGWQGLMKKNNK >gi|281297543|gb|ADDO01000043.1| GENE 7 7513 - 7869 297 118 aa, chain + ## HITS:1 COG:no KEGG:MGAS10750_Spy1711 NR:ns ## KEGG: MGAS10750_Spy1711 # Name: not_defined # Def: hypothetical protein # Organism: S.pyogenes_MGAS10750 # Pathway: not_defined # 1 118 35 152 152 176 87.0 4e-43 MANRFRNERIEIKLTKEEKEVFKKKMKLANCKTMSHFLRKCVLEKEIYVVDLEPFRNLQG LLSNATNNINQIAKATNTTSIIYKNEIESMNKQIEKISREIWQIHSLLLNKSKESSGD >gi|281297543|gb|ADDO01000043.1| GENE 8 7871 - 8047 96 58 aa, chain + ## HITS:1 COG:no KEGG:Apre_1758 NR:ns ## KEGG: Apre_1758 # Name: not_defined # Def: relaxase/mobilization nuclease family protein # Organism: A.prevotii # Pathway: not_defined # 1 51 1 51 443 94 94.0 1e-18 MAITKIHPIKSTLNLAIDYITKSEKTDGKILVSSFKCHPSTAHIQFMKTRKIIFYSIF >gi|281297543|gb|ADDO01000043.1| GENE 9 8128 - 8574 451 148 aa, chain - ## HITS:1 COG:no KEGG:Apre_0680 NR:ns ## KEGG: Apre_0680 # Name: not_defined # Def: hypothetical protein # Organism: A.prevotii # Pathway: not_defined # 1 146 133 278 278 209 82.0 2e-53 MKLELITGDSITPREIEYTYPCIFSTEAIKIMAYPIETILAEKYETIIRRNITTTRMRDF YDLYTLLKLKKDHIDYEILKEAIQRTSNRRGSQVIMQDYKEIIEDIIEESYLRSLWEVYL GENKYIRDLTFDKVIDVVTIISNRVSEL >gi|281297543|gb|ADDO01000043.1| GENE 10 8658 - 9506 970 282 aa, chain - ## HITS:1 COG:FN0315_2 KEGG:ns NR:ns ## COG: FN0315_2 COG3708 # Protein_GI_number: 19703660 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Fusobacterium nucleatum # 131 281 1 149 151 154 49.0 2e-37 MDIMKSFNLAIDYIEDNLTDELDEKEITRITGYSFPMFSRIFSIVSGYSLSEYIRLRKMT NAAIDLKNSDKRIIDVAIKYGYNSQDSFALAFKSFHKLTPGQVKKGEKYQYFPRIYFSIS VQGGNQMDIKIEKKKAFKVAGIKSDVTKSSNFPKVWDKLVAKVPREKFEEFGNGQIFGVG YDYIMDEEDSFIYLAGFDLTDEVKAEELGLDILSIPEKEYAIVSLEGPIPKCIHEGWKYI ISYFFPKEGYRHDESPDFEVYGDGDPNSEDYKMELWVPIVKE >gi|281297543|gb|ADDO01000043.1| GENE 11 9585 - 9656 65 23 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MINIESIKGKIRSLSEKKNSKNM >gi|281297543|gb|ADDO01000043.1| GENE 12 9653 - 10240 505 195 aa, chain - ## HITS:1 COG:no KEGG:Apre_0679 NR:ns ## KEGG: Apre_0679 # Name: not_defined # Def: hypothetical protein # Organism: A.prevotii # Pathway: not_defined # 1 195 1 195 195 335 93.0 6e-91 MNTLKEYIQENLIITNKEAEELGYTRHNLSELTKSGQLERLRPGLYQLKGKVIDDFVLIS SNSNRIIFSHQTALYLHDLSDRTPNVFHISVPQGYNASHIKNRYKDLQVHYVKIDLYEIG KTEIKSPQGNLIPVYDIERIICEIIIDREKIDKQIFTEAMKRYFKSPNKNLRRLIKYSRL FKIEDEIRKYMEVLS >gi|281297543|gb|ADDO01000043.1| GENE 13 10429 - 10614 169 61 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282882606|ref|ZP_06291225.1| ## NR: gi|282882606|ref|ZP_06291225.1| conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] # 1 61 1 61 61 111 100.0 2e-23 MWEFGQKFACGSYSIDTKDVNLEILHFKQFYKHFGFEKDEEGYVKKTQKNYMDVRVVLRL V >gi|281297543|gb|ADDO01000043.1| GENE 14 10852 - 12597 1932 581 aa, chain - ## HITS:1 COG:no KEGG:Tgr7_2850 NR:ns ## KEGG: Tgr7_2850 # Name: not_defined # Def: hypothetical protein # Organism: Thioalkalivibrio_HL-EbGR7 # Pathway: Nucleotide excision repair [PATH:tgr03420]; Mismatch repair [PATH:tgr03430] # 13 553 8 557 579 348 35.0 5e-94 MSKNYEYLNYNIAKAEADKVDEQIISALKAGRSFRVEAGAGSGKTYSLNRVIEWIQANKW NDYRRKKQNVICITYTNAAVDVISQRLSQDSFILPSTIHSFAWNAIKQYQSTLISIIEND ASLTTTETDFSKVLEIRYTLGHRYVSQGVHYLHHNDVLKLFCTMLDNAKFRRVFSDNYPL ILIDEYQDSYKPIITRFINFFIAEGIGPQFGFFGDAWQTIYQTNNACGAIEHSKLQEIKK GSNFRSAPRIVKLLNDIRPDLPQQSAIDNFEGEVVVVTCDDFSGERRTERTFKDDLPAEE LKSRLFQLSEHIKKNVSKDENIKILMITHKVLATQQGYERLLAIIDDGLRDKQDPFLLFF MNTVEPIYEALSTSNMQLLFDTLGIRRYPITKKADKMKWKEFESQLKKARNGRAIDVINT IVETKLVPIPSLVDGYYHLYFDAPDTIYGLDATIQNVLDLDYSQFKAAIEFLYPESEFST EHGVKGEEYDNVVFVISKGWNQYQFETYAPMITGKVPIPVGKEASYERNRNLFYVCCSRP KKRLFLFVSIPLNSTFRNFLIDIVGLENIYTFNEYLDNKAK >gi|281297543|gb|ADDO01000043.1| GENE 15 12612 - 14591 1035 659 aa, chain - ## HITS:1 COG:PA1939 KEGG:ns NR:ns ## COG: PA1939 COG3593 # Protein_GI_number: 15597135 # Func_class: L Replication, recombination and repair # Function: Predicted ATP-dependent endonuclease of the OLD family # Organism: Pseudomonas aeruginosa # 213 546 200 574 665 150 28.0 1e-35 MAKMRLSKIKIKNYRLLIDAELDIDAKTTLIVGRNNTAKTSCSNCINTVLQGNDFSYNDY PISKRENLYNLFFQFMEKKLSYEDLCRGIEPISIEFVVDYSLDDQDTKLGALSPFIIDVD VDTTTALIRAEYQLKIDESKLRELFKDSCYSNDKFAPKAEEMHAKLASNFSRLFGLIIYA VNPKNLEDWQVKSHRELKDLFPYYPIPAERILGEDGTQKNESLSSLIADYFSLNEEDLTP DIAEKVKELRAVVDGANKNVQKESDRILSDLVSKAVGFGYPNVEELQLGVTTELKIDDQI KNQTRLSYSSGASDESLPSSHNGLGYKNLIKMEFLLAAFARDVEKKGDACIPLLFIEEPE SHMHPQMQHAFAEHLEKFLDKITTVHIQTFLTTHSAHIANTMDFSKIRYAKKSKSGVVYK NLDIFARENADNMDFIKKYLTLSRCDLFFADKIIFVEGASERLLLPDMIEKCEKEKLFDS EKYKLPAQYYALIEIGGAYAYKFIPFADFLGLPCLILTDIDSMIDGRTKAVVSKGKTTSN ATIKWWMRKIKGIPQNSKDKIYLADITAATDAEKTLRKCHIEYQTSENGICGRSLEEAIM NVNRSHYGFTEPVAEEDLEFTEKSKTDFALNLICNNPNYSIPQYIKNGLTWLNRQRVLE >gi|281297543|gb|ADDO01000043.1| GENE 16 14806 - 16362 1244 518 aa, chain - ## HITS:1 COG:SP1029 KEGG:ns NR:ns ## COG: SP1029 COG2265 # Protein_GI_number: 15900900 # Func_class: J Translation, ribosomal structure and biogenesis # Function: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 2 518 4 543 543 322 37.0 1e-87 MKNKELIGQIIDFDYKGMGMTKLDDIPVFLDKGVIGDKVSYTITKDKKSFYKGRVTKILK KSKDRVESPCKYFNKCGGCDFLNYKYEKSLDWKKQSVNNKLQRISELDIKVSKVNSSEKT FNYRNNMQFQVKNGKIGLYMKNSKEIVPIEHCLMQSTNANKTLKILTKFKNLEKIKTLGI RTNYKDQVMLIISSKEKINKLNLILGDLIDANVVSIYENINNRKNAHYGDEFNLLYGQEY LEEKINKLYYKLSPASFFQVNREQAENLYNKAMEFLQVKENEKIADLYSGVGTLSLEIAS RKAQTLGVEIVEEAIEDARINAQKNKLQARFICGKSEEILEKIQTDEKIKMDKILVDPPR KGMDKKLVDYLNKNSYEKIVYISCNPATLARDLKILKEKYKVEKVEIFDLFPYTSHVEVI TLLSKLDPKKYISVELPMDDMDLTSAESKATYKQIQNYVFKKFGFKVSNLYIAQVKEKCG IKERENYNKPKKEDLKQPICPIEKEEAIKDAFRYFQMI >gi|281297543|gb|ADDO01000043.1| GENE 17 16352 - 17179 245 275 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|212640476|ref|YP_002316996.1| Uncharacterized protein conserved in bacteria containing two ribosomal protein S1-like RNA-binding domains [Anoxybacillus flavithermus WK1] # 3 275 2 283 285 99 27 5e-20 MELGKIQKLKIKKITGNGCYLLDNENNEIFIKKEEVKNPKVGEFIEVFIYNGHNKDICAT TKKPLAQVGDLKKLKIVEKSKYGYFVDIGIDKDILLPFGETQGRLQVGEKYLLYLFHDRS QRLALTMNIKDKLRLNENFQTNDMVTGTIYAIGKVGYFVAVEDKYDGMIPKEEVKGLLVI GDEVQARVARVLTNGFITLTLREKAYKQMNVDAEQILKMLKDNGGTLYLGDKSTPEEVKE ITGLSKSAFKRAQGALYKRRLIDLYDRKIVLKNEK >gi|281297543|gb|ADDO01000043.1| GENE 18 17170 - 17745 387 191 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282882574|ref|ZP_06291193.1| ## NR: gi|282882574|ref|ZP_06291193.1| conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] # 1 191 1 191 191 327 100.0 2e-88 MKIFNAFNRKKVSIYRKILETNFDIEALKNLNLSDGSYEYNIITKKESIKSISTRQLNNA LDDFYGRQNSALEEFDDFFKKNRALEAQRPFLVNLMQKIEFSEDKLLGLSILLMRDSTVE ESVKFGMLLSKYYDLRNYSKVEIIFKNLMKHPSFIYYGLEYLMSVDYGQIDDLYDKTFFY GKKIIEEKVWN >gi|281297543|gb|ADDO01000043.1| GENE 19 17799 - 19205 1553 468 aa, chain - ## HITS:1 COG:CAC0691 KEGG:ns NR:ns ## COG: CAC0691 COG2720 # Protein_GI_number: 15893979 # Func_class: V Defense mechanisms # Function: Uncharacterized vancomycin resistance protein # Organism: Clostridium acetobutylicum # 37 382 24 375 411 144 31.0 4e-34 MKKTKVLFSKVKEKSNNVYLLFFALIALIFLSLIIHYNHSKKSDLIYSGISIDGIKVSKL SKDEALLKVKEKSQSDINAKSIKFLYDDKDINYPLNEFGYTLDYDKAINEAYALGRGKNG LSNFFRISMGGFLHKNIPLEANYNNDKINNVIDELASIVYLKPKDANLQIDESGNCIIVK EIPGRYLETEEIRQLIKDSLKSGKDIELPLYKTEPAVSSKMFEGIDKKLGEFTTDYSKSE KNRKKNIKLGARFFKNMILSPGKEISFNKTIGDISEENGFKSAGVIVNGEFDRGIGGGIC QVSTTLYNALIRADLEIIERSNHTRPISYVPLGTDAAVASGSKDLKFKNNTNHNIYITSK ADGENLSFMVYGNSEDRDYKINIVPKLLEVIEPDTVKEYSDKIPNGEVEVKKSGSKGYSY VTYKEIVKDDEIVKTETLSKSYYAPQDRVVVIGDGEDSDENDSNENSD >gi|281297543|gb|ADDO01000043.1| GENE 20 19383 - 19664 208 93 aa, chain - ## HITS:1 COG:BS_ylxP KEGG:ns NR:ns ## COG: BS_ylxP COG1550 # Protein_GI_number: 16078727 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 3 82 2 80 92 65 40.0 2e-11 MNVGICSLEIFIYDVNSLKEKRSVIKSLINKSKNKFNISIAEVGDNDKWNRSIIGFSCVS NDTKLIDKVIESEIKFILGNFPVEILNTNREIL >gi|281297543|gb|ADDO01000043.1| GENE 21 19772 - 20272 598 166 aa, chain - ## HITS:1 COG:BH2302 KEGG:ns NR:ns ## COG: BH2302 COG1607 # Protein_GI_number: 15614865 # Func_class: I Lipid transport and metabolism # Function: Acyl-CoA hydrolase # Organism: Bacillus halodurans # 4 155 5 158 162 91 32.0 5e-19 MNKKKVSESKVIYQYGVMAGDLNTGGTMYGPKIIDICDHSSGQCAIKHIRGPVATISVDS IQFVRPLYEGDFLLAESMVSGVGNTSIEIFTKIFVEKAMTGQKELAVMCFLTFKAKKSEP GSMPEIVAETEEERIIIEGYSKRKEINKKRQSYNKELRELLEKSTD >gi|281297543|gb|ADDO01000043.1| GENE 22 20265 - 21191 1293 308 aa, chain - ## HITS:1 COG:yeiN KEGG:ns NR:ns ## COG: yeiN COG2313 # Protein_GI_number: 16130103 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Uncharacterized enzyme involved in pigment biosynthesis # Organism: Escherichia coli K12 # 11 304 11 305 312 341 59.0 1e-93 MLDKENFKKYVEFSPEVKDALENNKPVVALESTIISHGMPYPKNLQTAKECEDIIRKGGA VPATTAIINGKIKVGLTEEELEFLSTSKDVIKTSRRDFAYIVSQGLNGATTVASTIIVAK LAGIKIFVTGGLGGVHRGASETFDISRDLEELAANDIMIICAGCKSILDIGLTLEYLETK GVPVFAYKTDEMPAFFTRHSGFKVDYKIDEAKDAADIARTQWNLGLKTGILFTNPIPEQA SMDEKVINKAIEKALEEAKEKGIHGKETTPFLLSKVVEVTGGKSLEANIALVKNNAKLGA EVAKYLYE >gi|281297543|gb|ADDO01000043.1| GENE 23 21184 - 22251 1065 355 aa, chain - ## HITS:1 COG:ECs3058 KEGG:ns NR:ns ## COG: ECs3058 COG0524 # Protein_GI_number: 15832312 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Escherichia coli O157:H7 # 54 355 1 309 313 178 34.0 2e-44 MTPREREIMALLRKNPQISQREIAEKLNITRSGVSTHINNLAKNGYILGRTYILREDDYI SVVGGANMDIVGSSYNKIIRKDSNPGYIKYSSGGVGRNICADLARLGIKTSFISVLGTDA SGSFIKNELSSINVDTSNILIVSGSTPHYLAILDDSKDMELAISDMDLVKKIDKDFLQGK RNIISSSKLTILDTNLEEEALGYLFKNIPSKYLVDGVSTKKVVKLKNYLPYIYFLKVNEY EAKALTDEKDDIEKIAEELLNKGLNSLCITLGSKGAYYFSKKEKIFKKSINLDVVNASGA GDAFMAGFSYGLFNDESVEECLNLAMASSRIVLKSKTASPHDYNLEKLMEEVKNA >gi|281297543|gb|ADDO01000043.1| GENE 24 22376 - 22978 546 200 aa, chain - ## HITS:1 COG:BH3779 KEGG:ns NR:ns ## COG: BH3779 COG1435 # Protein_GI_number: 15616341 # Func_class: F Nucleotide transport and metabolism # Function: Thymidine kinase # Organism: Bacillus halodurans # 13 184 15 188 204 118 35.0 8e-27 MHQYKGRLILHTGSMFSGKTSSLEKDLNRFSIANYKTMAFKPKVDSRFSESKIVSHDKNS FSAITVEDSSDILKVVLEKSPQVIGIDEIQFLKDKPEKILKNIEEILDMSVTVVVAGLDM DYLAHSFEIVKELMPKADYLYKHHAVCKRCGTDAWVSHRKVNVNDRLLLGAEGEYEPLCR SCYKKAIEEDKINLNQEKFL >gi|281297543|gb|ADDO01000043.1| GENE 25 22990 - 23589 710 199 aa, chain - ## HITS:1 COG:lin2475 KEGG:ns NR:ns ## COG: lin2475 COG0652 # Protein_GI_number: 16801537 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family # Organism: Listeria innocua # 15 197 17 194 194 212 60.0 3e-55 MLEQLEKPKKGEKIAVLNTNHGQIKIRLFPQAAPKAVENFIGLIENKYYDKTIFHRVIKD FMIQGGDPTATGRGGKSIWNKAFEDEFSINFRNIRGALSMANAGPNTNGSQFFIVQVPSC QEDIIRQMEDAGPSRGFTEDVIEAYKNNGGAWWLDGKHTVFGQVFQGLDVVDEISGLEVN YMDKPLEDVIIENAVIEEI >gi|281297543|gb|ADDO01000043.1| GENE 26 23599 - 24906 1121 435 aa, chain - ## HITS:1 COG:TM0815 KEGG:ns NR:ns ## COG: TM0815 COG0534 # Protein_GI_number: 15643578 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Thermotoga maritima # 1 415 30 445 464 132 25.0 1e-30 MGTAFVQMCYSLVDLMWLGRLSTGAVAAVGTCSFFVWIAQAITLIAHTGLSVGLSQAYGR NDHEEAQKVMISGFWVNLFFCLLLTFFYLTFRNKIIGYYNLEKEVENLTLIYFTIVSAGL IFTFLNPSFSAVFLARGNSITPFSISIIALLFNLLFDPILIFGFGPFPHMGIAGAAMATV LAQAIASSLYIFSGIKAKEIFTKVNYFKKIDIKYFTDHLRLGFPPSIQSTVQALCGVILT KYIATYGAVSIAVYSIGSQIESISWMTSDGFSAAFAAFFGQNYGAGNFDRIKEGRKASLI IINFVGIFSALLMFIFPYQLYQLFIPGDVDVILAGVVYLRIMALSEYFMPVEIGTTGMMN GLGLTNYPAVNAVVLNLARIPFALIFMPFLGVSGIWLSMSLSSILKGAFITIIFIYLRNV TKGFTINMEKYVSRK >gi|281297543|gb|ADDO01000043.1| GENE 27 24983 - 25633 395 216 aa, chain - ## HITS:1 COG:ECs3771 KEGG:ns NR:ns ## COG: ECs3771 COG1272 # Protein_GI_number: 15833025 # Func_class: R General function prediction only # Function: Predicted membrane protein, hemolysin III homolog # Organism: Escherichia coli O157:H7 # 7 211 11 213 219 166 50.0 4e-41 MVDRVKYSFKEELFNAISHWLGFVAGIVGLVVLIIFGVKNHSPLQIVGFSIYGACIILLY LFSALYHSIPFEKAKTVLRIFDHLSIYLLIAGTYTPIILNSFSGSRRIVLISLIWGLSVI GVLFKLFINGRFTKFKKLSTVIYLALGWLSILFIKQILLTTSFKFIVFLLIGGVLYSLGT IFYMDRKIPYNHAIWHLFVLAASVAHFIGIFDAYAI >gi|281297543|gb|ADDO01000043.1| GENE 28 25636 - 26391 1193 251 aa, chain - ## HITS:1 COG:lin1821 KEGG:ns NR:ns ## COG: lin1821 COG0024 # Protein_GI_number: 16800888 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionine aminopeptidase # Organism: Listeria innocua # 1 250 1 250 252 307 56.0 2e-83 MVIIKTKEEIEKMIVAGKVLANVHHELRNFIKPGVKTIEIDRFVENYLYEHGASPEEKGY EGYPYSVCTSVNDEVCHGFPSEYALKSGDILNVDLVVNVNGWLADSGWSYEVGEVSDEAK RLLRVTKECMYKGIELARIGNRLGDIGAVIQEHAEKNGYSVVREFVGHGIGREMHEDPQV LHYGKAGHGLRIREGMVFTIEPMINQGKKEITIDKNGWTARTKDGSLSAQYEHQLAITKD GPIIITDQGDC >gi|281297543|gb|ADDO01000043.1| GENE 29 26385 - 27287 1040 300 aa, chain - ## HITS:1 COG:CAC3449 KEGG:ns NR:ns ## COG: CAC3449 COG0457 # Protein_GI_number: 15896690 # Func_class: R General function prediction only # Function: FOG: TPR repeat # Organism: Clostridium acetobutylicum # 15 297 8 294 305 107 31.0 4e-23 MINSNKYYNYIIIANEFLYKEEYSKAKNAFIKALSNSKSDKEKIDAMYEIADINLLLKNY QDAFNNFKEILDLKNDEAGACYGLAISNDFLKGDYNFSIEYYKRAIEIDKNYDRAYFYLA LIYDKLDRKDEAIECLKKCIEIDSYDYNSYNIIGAIYESKKEYEKALKYVKKSLNIKPGF GEGLFNMGVIYKALGNNDEALNYYKKAVGEFQSPYLFLNMSALYIEREDYKKAVSILLVG LSDFPNSVNLHYNLACSYKNLGKKDLALEELQTAIKLNRDAYDWAKEDLDLKNLVEVIKW >gi|281297543|gb|ADDO01000043.1| GENE 30 27280 - 27996 399 238 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282882577|ref|ZP_06291196.1| ## NR: gi|282882577|ref|ZP_06291196.1| conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] # 1 238 1 238 238 394 100.0 1e-108 MNKGIYIIDKNINENENIISTDMFFSDNSDPIEKIEDFFKNETRENIFIISKPKSLRSKE YFFKAARNHNKNLFYLNTISPGFDSYFLALKGINLENRSYDFENIYLALQDQIRDIKYYA LFSSLDYLEENNMLGNIKKKVSLLNKNYYIISCDNKGIFYTCKVIKNADRASKYFLKFIK DNLKMNFNFNIGIEYKNDRIRIESEEYLRSNLQWANLYRKSLNPIKGLELAVTITKHD >gi|281297543|gb|ADDO01000043.1| GENE 31 27989 - 28546 547 185 aa, chain - ## HITS:1 COG:no KEGG:EF1190 NR:ns ## KEGG: EF1190 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 2 173 4 174 189 115 38.0 1e-24 MINEAILDYAKSLENIHISRWDELPDFDLYATQVVDFIKKELFFLNIFGEDFVTKSMLNN YVKNKMIPRPNNKKYNKEALAKLIAITLLKQIMEIPDVCKGMFFQVQNSGTMELAYNTFC QEFEDGINLIFKEMPTEKDPIDLCIKNVEKSRIITHLASVALASKLMVKKVVDSGGFLVK EDTYE >gi|281297543|gb|ADDO01000043.1| GENE 32 28658 - 29590 528 310 aa, chain + ## HITS:1 COG:FN1142 KEGG:ns NR:ns ## COG: FN1142 COG1242 # Protein_GI_number: 19704477 # Func_class: R General function prediction only # Function: Predicted Fe-S oxidoreductase # Organism: Fusobacterium nucleatum # 1 293 2 295 304 255 43.0 7e-68 MRRFLSFNDFFREYFKGKAVKLSLDGGFTCPNRDGKISNKACLFCSDAGSGDFLNGNLTI DEQIEKQKLFLSSKWKAKNFIAYFQNFTNTYGDFSYIKNLYTYISSRDDIVGISIATRLD CIDENIIELLKQISEKKLLWLELGLQSTKESTISLINRGYSHKEFDKNLQILKKNNIKFL LHLIYGLPNDSIEDMKETFNYANSQGPFGIKFHNLYIQTNSPLYKYYLENPFKLISKDEY IDLIIYSLENLNKYTVVHRITGDADKKFFYEPKWSADKLSIISQIDKILKEKNIPIITNE DIIKACNYWR >gi|281297543|gb|ADDO01000043.1| GENE 33 29591 - 30934 1655 447 aa, chain - ## HITS:1 COG:AF1145 KEGG:ns NR:ns ## COG: AF1145 COG0427 # Protein_GI_number: 11498745 # Func_class: C Energy production and conversion # Function: Acetyl-CoA hydrolase # Organism: Archaeoglobus fulgidus # 1 440 7 462 482 293 38.0 4e-79 MDFSKIYNEKLISPKEAAGLVKDGMRIDYGWGASMSKTFDKALANDLDRLNEISVCSGVV LSKPKIFDADPEGKKVIWNSYHSGGPDRKRINAGEGGFYVPLRYSELPRWIRENIDVDIA VVVATPMNKHGYFNFGLNASHQMAVIEKAKIVIVEVNKNVPYCQGGWEHEISVNDVDYII ESENEPLTEIPAGSFTDVDKKVAELIVEEIPNGATLQLGIGGMPNAVGSLIADSDLKDLG IHTEMYVDAFVDMTLKGKVNGSKKNVDRFRQAYAFAAGSKKLYEFLDNNAQAMAVPVDYT NDARVIGSIDNFISINNAVNIDLYGQVSSESTGYKHISGTGGQLDFTLGAYLSKGGKGFI CLSSKFFNKKIDKEESRVVSEFPRGSVISVPRPCTHYLVTEYGIFNCKGRSTWERAEGII NLAAPEFRDDLIKDAEKMGIWRNSNKR >gi|281297543|gb|ADDO01000043.1| GENE 34 30983 - 33916 2037 977 aa, chain - ## HITS:1 COG:BH2980 KEGG:ns NR:ns ## COG: BH2980 COG1074 # Protein_GI_number: 15615542 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) # Organism: Bacillus halodurans # 1 939 3 1083 1129 176 22.0 2e-43 MVLNEIQQKASTILDKNISLISGAGTGKTGVLTQRFINIIKAQNGKFDNILALTFTDKAT EEMNNRIYHELAKTSYDFNIDKLNIMTIHSFCKDLILSYNRYLHINSNFDLDNDFFCQIL LKESIKKILSTYNNEDYLSFLLDLNFSIVPRDVEDIFFDLYNRLRNKNISLDDLKNASFV NFESCEDKNSLKNNLLTLGKNKSLKTLNKFINSSIFSEIFDKENLDSSDLYTIKENLGQS KNFEDELNSVKEQISNLLLALDDSNYKYYEIIIEILEKIHKLYTKEKRQRGLLDFDDLLI YGNELVQNKDVSDKLNKKFTYILIDEFQDVNILQNNIICGLNAKNIFIVGDPQQAIYGFR GSFIGIFDNFYKLFRDKDKEILTLNMNKNYRTDAFIISDINTLFNNIFTDYQGLVANNKA SRKIEKYTVDDEDDYLKLIKYLLSENDSKDIGILARTNGELEKLETYLKQNNIDVNRGKI NLKQTQVIKFILSFLRSIFNKNDFTSFMDYISSPFCDLSFNSLVTVLLKGYRSIDEVCHG DISDSNLARAIDVYIKIKKIKNVSSLDYLIKKCIDEFRIFKLNRNDWDYILILYEKSIEF KEKGLSSFRVFERYIESVEVNDKSQGVNLLTIHKSKGLEFKTVVLINMSKPLSNKTSQKI TFNKKFGLAIDSQRSNGKFDLINNEQKDINFEEERRVLYVAMTRARDRLIICSEKKQSPA SYMSILNAPDKFFKEVNIDEEEYQVKVNEDTRKLINLNEAFKYRYRQNYSITDFLNYDYD EDAYLMKFFFNRDTKKLQGNTYYIDPKVRGNMLHFFAEHYNEEKIDDYIEFLFKIFKEDI NGNKFNEIRELIVNYLNLRDKEILYKELEFFYDFNGHIVRGFIDQVVYDEAIYIVDLKTS DLSEEELVKNYKWQLVFYSKVFKNIYKKEVKGAFIYSLKHCKKVPVEINDKIINELDEKF LKFIEQSRKINFYKIFS >gi|281297543|gb|ADDO01000043.1| GENE 35 34116 - 37217 3799 1033 aa, chain - ## HITS:1 COG:CAC3038 KEGG:ns NR:ns ## COG: CAC3038 COG0060 # Protein_GI_number: 15896289 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Isoleucyl-tRNA synthetase # Organism: Clostridium acetobutylicum # 8 1031 7 1033 1035 993 47.0 0 MAKFESLSKDSAAQREERISEYWEKIDLLHKCVQTREGNKKYIFYEGPPTANGKPGIHHV MARTLKDLTCRYHTMLGYKVNRKAGWDTHGLPVEIEVEKKLGLHNKQDIEKYGIEKFNEK CKVSVFEYEKEWRELTKRMGYLIDLDHPYVTLENDYIESVWNILNNMFKDDLIYEGHKIL PYCARCGTGLASHEVAQGYEEITTTSVTVKFKVKGKDNEFFLAWTTTPWTLPSNVCLSVN PEVDYVKVKVKDEYYYLADNLKDAVLKDLEYQVVEHLKGKEMEYMEYEQLLPFIDVKEKA FFVTCADYVTIEDGTGIVHTAPAFGEDDYNTGRRYKLPVVNPVNEEGKFTQTPWKGTFVI DTDPEVINYLWENGILFSKQKIKHNYPHCWRCHTPLIYYAHPSWYIEVTKFKDKLVDNNN GVTWFPPFVGEKRFGNWLENLNDWAISRSRYWGTPLPIWRCKCGHVESIGSRKELKEKAL EDIDENVELHRPYVDNIHLKCPKCGDIMTREKDVIDVWFDSGSMPFAQWHYPFENKDNFD ELFPADFICEGIDQTRGWFYSLLAISTYMTGKSPYKNVLVNDLILDKEGKKMSKSRGNTV APFELFDKYGADVVRWYLLYVSPPWNPTKFDEDGLREMESKFFRSLRNIYNFFSLYANTD DIDPRTFQVKYEDRDEIDKWLLSKYNRLVKVVRDDMDKFELTKVVREISDFVIEELSNWY IRRNRRRFWKTDKDDSKFAVYSTTYEVLLGISKLIAPIVPFISEELFRSLTDEESVHLAD FPQFDEEKINDKIENRMDLVRDLVTLGRAAREEAKIKVRQPLSKVIIDGKYKKIISDLSD LIIEELNVKEVIFEDDLSQFMNFELKPNFREVGKLLGSKVKSFSKYLNSVDAKKLLDDLE NGQVKIEIDGEEIEINKDYVLVNIRSKKGFDVNMANNIFVILDTDLNEELINEGYVREFI SKIQQFRKKLDLDVLDNIEISFVSDKEVTEALFNDEEFIKSETLAKKIEEKDQGGEESSL NGHPIKINIKKVD >gi|281297543|gb|ADDO01000043.1| GENE 36 37433 - 37840 571 135 aa, chain - ## HITS:1 COG:XF1477 KEGG:ns NR:ns ## COG: XF1477 COG1959 # Protein_GI_number: 15838078 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Xylella fastidiosa 9a5c # 1 107 2 108 153 74 35.0 4e-14 MKITQETDYAFRITSFLASHENEIIGAPIIAEECSVTERFTLRILRKLNLAGITYAKRGA KGGYGLKRPKEEITLYQIICAIDGPTVINRCLGYDHYCNRKAENGVKHCKFHKKLFHIQK TIINMFDSETIDNYI >gi|281297543|gb|ADDO01000043.1| GENE 37 38172 - 39443 1289 423 aa, chain - ## HITS:1 COG:BH0774 KEGG:ns NR:ns ## COG: BH0774 COG4091 # Protein_GI_number: 15613337 # Func_class: E Amino acid transport and metabolism # Function: Predicted homoserine dehydrogenase # Organism: Bacillus halodurans # 1 421 4 427 439 342 43.0 6e-94 MNYLQNKLKEHGNICVGIVGLGIMGKSLLTTLNILEAFGPSIISARRKESLTEAFAIAKI PEDRYVLTNDIDKARIAIKENKYVGTLDNFIPATISDCLVDCTGVTDVGCQISLCAIKNK VNIVSLNVEMDATVGPYLKDLAKESGIVYSGTAGDEPGAIVDLYDFCKNCGFEVLVLGKG KNNALDNYATQDDLAQDAKRRGINKRMLTSFVDGTNTMIELNAVCNALGFLPDVRGCHFF HSTPKTLADDIKLKSQGGILNSYGVVDFVKGIAPGVFAIIKTKNEFIRKEMEYLSMGKGD NFAIYRPFHLTSLETPTSIMRAVLLGDSTISPKDKPYAETVAVAKRDIKKGEKFDSIGGY MVFGSLEDAKIQKKENHVPIGIITEGSYAKRDIKKDTVLTRDDIELNEDNIIVKTRREQE KIY >gi|281297543|gb|ADDO01000043.1| GENE 38 39454 - 40644 1020 396 aa, chain - ## HITS:1 COG:CAC3590 KEGG:ns NR:ns ## COG: CAC3590 COG2081 # Protein_GI_number: 15896824 # Func_class: R General function prediction only # Function: Predicted flavoproteins # Organism: Clostridium acetobutylicum # 1 392 1 403 405 268 39.0 1e-71 MDIIIIGGGASGIFAAINLKKHNNNVRILEKNSRIGKKLLVTGNGRCNYSNINLSENNYN KPEFVKNAIDSFSNTDLVNYFKMMGLYSCVENNRIYPITLKANSVLSILMKKLSEKNICI NTDTEVLSVSKEKDKFKLITNKGEFYCHKLIVACGGSSMPKSGSDGSFFKILKKLGHKVT PIFPALTQIKLESAYLKHLQGTKVVGKVKLYSKEKLIIEKYGDLLFTSYGISGPPILDIS VKLSEYNDLYIEMPLINYSDKIDKEEIFSSFYMFNDYSIDEFLLGLVDKKFIHYILETLG IKSNTPLNFLEKYYSDIIDILFNSKFYVKGTTGFENSQVTRGGVDISEVSPFDFSSKICD GLYIIGEALDVDGECGGYNLHFAFACAYTLSKNFNY >gi|281297543|gb|ADDO01000043.1| GENE 39 40841 - 41716 570 291 aa, chain + ## HITS:1 COG:YPO0919 KEGG:ns NR:ns ## COG: YPO0919 COG0668 # Protein_GI_number: 16121224 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Small-conductance mechanosensitive channel # Organism: Yersinia pestis # 44 282 34 270 289 114 29.0 3e-25 MKDLLAWAGKNQANKLEDVINDAKNPTFWESIDWSGILKKFAFALIIFIIGYYVLKVINL LIRKIMNRHNINKGLTHFLIKFFSFFYLFVLFTIIAGNLGFKITSLITLIGSLGLAIGLA MQGSLQDLASGILIVTLNNFRVGDYVYVGENDNLLKVYSINLFNSLFRNSSNHIVSFPNS YLTKNKITNLSTLDYVYCSYYFHVPVDVDVELIKTLCKEVLDKEELIIHDQDYLIKISEI TDYSLKFLMSGQVKAKDLLACQGNLLEGMRLAFKDHGIKVPHQKFIISNEE >gi|281297543|gb|ADDO01000043.1| GENE 40 41779 - 42789 1079 336 aa, chain - ## HITS:1 COG:FN0810 KEGG:ns NR:ns ## COG: FN0810 COG2008 # Protein_GI_number: 19704145 # Func_class: E Amino acid transport and metabolism # Function: Threonine aldolase # Organism: Fusobacterium nucleatum # 1 331 1 338 340 229 40.0 6e-60 MNNFLNDYKDFGCKEIYENMQKIFDNNYCGYGLDEISNNARQLLKNEIKRDSQIEFISGG TAANILATTLALRPYEAVLALDSGHISHHETGSIEATGHKVINITSPDGKMKVHQIKDLI NNMSEEIDVKIKVVYISQTTEKGTVYSIDEIKKIYDLCVDNGIYLYIDGARLAHAMAANN SKLEDYGKYSHIFSIGGTKNGAIFGEAIVILDENLRKNFRYYMKQRGAMMAKSFLISLSF QTLFTDGLYYKNAHKAWEMSRLLVDELKKIDREPIFCESNQIFLKSNPEEIEFLKKENIF EVDDKKESIIRLVTDYRTNKEDIRGFISSLKKWGTD >gi|281297543|gb|ADDO01000043.1| GENE 41 42968 - 44002 791 344 aa, chain - ## HITS:1 COG:SPy1056 KEGG:ns NR:ns ## COG: SPy1056 COG2855 # Protein_GI_number: 15675048 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pyogenes M1 GAS # 25 344 24 339 339 311 57.0 1e-84 MNSFIKKNLKGILLCFTLALPCHYLGKIFPIIGGAVLAILLGMFVGFFMKDKSVFNDGIK FTSKKILQYAVIFLGFGMNLSVVLETGKESLPIILSTISTSLIIAFLWYKFGKMDKNIST LIGVGSSICGGSAIAATAPCIDASEDEVAHAISVIFFFNLLAALIFPTFGSLIGFSTTSG QAFGIFAGTAVNDTSSVTAAASTWDNLYNLGTQTLDKAVTVKLTRTLAIIPITLAIAIYR AKNSNTKSSEKPSLKQIFPFFIIYFVLASVITTIALKNGYDIAIFAPFKELSKFFIVMAM AAIGLNTDIVKLIKNGGKPIILGFSCFIGITFVSLLLQHLLQMW >gi|281297543|gb|ADDO01000043.1| GENE 42 44203 - 45096 762 297 aa, chain + ## HITS:1 COG:CAC0093 KEGG:ns NR:ns ## COG: CAC0093 COG0583 # Protein_GI_number: 15893389 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Clostridium acetobutylicum # 8 278 7 276 290 110 32.0 3e-24 MLDYRTNTFITLCQCMNFTKAAQKLNLTQPAVSGHIKYLENFYQAKLFIRDKKSLVLTDQ GKILYMALNSMANDQVKIKNIISKNTAKNKKISLGLTRTIAEFAVLDRLIEFISKEKNSD FYIHYKNTKDILEDLEKGKIDFAIIEGFLKSQNYYVKKFKSEKYICIANKNHKFKNKINN LSDLLSERLIIREEGSGTLAILKNMLAIQNLSLKDFKNIIQINNMHAIVELLEKDCGISF LFESAVKKHLENKELITVNLKDFRVSHDFSFVCNKNSIFIDDYLELFNSFIEKNKNS >gi|281297543|gb|ADDO01000043.1| GENE 43 45346 - 46329 953 327 aa, chain + ## HITS:1 COG:MA1614 KEGG:ns NR:ns ## COG: MA1614 COG2110 # Protein_GI_number: 20090472 # Func_class: R General function prediction only # Function: Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 # Organism: Methanosarcina acetivorans str.C2A # 5 173 31 194 195 129 42.0 1e-29 MPFEIVRNNIVNIEVDAIVNTANPKPIVGGGVDSEIHKGAGPELLIARKKIGDIAFGKAF ITSAYNLKAKYVIHTSTPSWEGGYKGEAEILSDCIKNSLNLAKEKDCDSIAMPLIGTGTC GYPSDLALQITIKEVSAFLLKNEMHIYLAVFSKDAFSLSKKLFKSVKEYISENYVEEKIN QEYIGSFRRKYSLEADMMSPFNQDSECIEDILKNLDEGFSKTLLRLIDKSGKTDPEVYKK ANIDRKLFSKIKNNPDYRPSKTTAIAFALALELNKDGMEDLIGRAGYALTRSSKFDLIIE YFIERKNYNILEINEALFAFDQPLIGG >gi|281297543|gb|ADDO01000043.1| GENE 44 46401 - 47045 889 214 aa, chain + ## HITS:1 COG:no KEGG:Closa_3698 NR:ns ## KEGG: Closa_3698 # Name: not_defined # Def: von Willebrand factor type A # Organism: C.saccharolyticum # Pathway: not_defined # 1 214 5 217 219 263 61.0 3e-69 MVELVFILDKSGSMQGLEKDTIGGFNSMIERQKKEEGEAYVSTILFNEESKVIHDRVSIK DVPKLTEEQYYVEGCTALLDAVGGAIKHIGNIHKYARKEDVPDKTLFVITTDGMENASRR YSYKEVKRLITKQREKYGWEFIFLGANIDAEGEGEKFGIKREMAVNYHSDEKGTELNYRV IGDAISYVRRNKGRVDKHWKDEITEDYKNRKDKR >gi|281297543|gb|ADDO01000043.1| GENE 45 47294 - 48397 1392 367 aa, chain - ## HITS:1 COG:no KEGG:BBR47_14560 NR:ns ## KEGG: BBR47_14560 # Name: not_defined # Def: hypothetical protein # Organism: B.brevis # Pathway: not_defined # 106 330 275 488 490 97 29.0 1e-18 MDEIGSLRYLSNDEKQGFISRVMSATTVLDVYNIVLEAKAKNIENMSNTNPQPNPYPNPW GGGGSSWNPSQPSPFPGGGGGGYYPSNPNYNNSNNNYNSGNSTVNNYYGSTNNGSGSASG PIQSPSSNSKNGQKVSLKKEAPYMQGYNGKFRPNDSLTRAEAAQIIANALMKDGYKLNDS DRINFKDVKEKDWFYNAVRLASQAGLVKGYENGNFMPNKKISRAEWISILKRFKKLSNAS GNGLNMKANHWALKEVQAALDNGWLEIYVDKKVKFVADQPITRAEVAAIANKAFGRLIDT NYIDANKSTLFIASDINKGMWSYYDIICASNTFLQDGANYKANVRKDDKNAYNIDVSSYK IDMLRFQ Prediction of potential genes in microbial genomes Time: Mon Jul 18 12:33:20 2011 Seq name: gi|281297541|gb|ADDO01000044.1| Peptoniphilus lacrimalis 315-B contig00082, whole genome shotgun sequence Length of sequence - 664 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 44 - 103 4.9 1 1 Tu 1 . + CDS 129 - 663 467 ## COG3464 Transposase and inactivated derivatives Predicted protein(s) >gi|281297541|gb|ADDO01000044.1| GENE 1 129 - 663 467 178 aa, chain + ## HITS:1 COG:FN0599 KEGG:ns NR:ns ## COG: FN0599 COG3464 # Protein_GI_number: 19703934 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Fusobacterium nucleatum # 1 177 4 177 428 92 38.0 3e-19 MSINNYIKDLLNIKDKNIVIDTENIIVKKVKYIDTKFIYGKLTYNPKACPCCGHVNESFN IIKYGSKACKIKLPSISNIPTILFLKKQRFLCKECGSTFSAKTDIVSEFSNISNDVKRKI AIDLTKISSFKSIAESNNVSLIPFLEFLKNGINLLKKDFSYIPPTLSIDEFKSTKNVS Prediction of potential genes in microbial genomes Time: Mon Jul 18 12:33:29 2011 Seq name: gi|281297525|gb|ADDO01000045.1| Peptoniphilus lacrimalis 315-B contig00025, whole genome shotgun sequence Length of sequence - 23807 bp Number of predicted genes - 15, with homology - 15 Number of transcription units - 6, operones - 4 average op.length - 3.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) + TRNA 65 - 141 79.5 # Met CAT 0 0 + TRNA 185 - 259 75.0 # Glu TTC 0 0 + TRNA 266 - 341 88.9 # Val TAC 0 0 + TRNA 396 - 472 87.0 # Asp GTC 0 0 + TRNA 474 - 549 92.8 # Thr TGT 0 0 + TRNA 559 - 644 72.9 # Tyr GTA 0 0 + TRNA 658 - 731 80.0 # Gly TCC 0 0 + TRNA 737 - 813 84.6 # Arg TCT 0 0 + TRNA 831 - 906 80.0 # Gln TTG 0 0 + TRNA 913 - 988 87.4 # Lys TTT 0 0 + TRNA 994 - 1082 65.4 # Ser TGA 0 0 + TRNA 1224 - 1299 87.4 # Lys TTT 0 0 + Prom 2650 - 2709 9.2 2 2 Op 1 . + CDS 2730 - 3893 1270 ## COG0460 Homoserine dehydrogenase + Prom 3898 - 3957 4.0 3 2 Op 2 . + CDS 3977 - 6274 2377 ## GYMC10_5883 copper amine oxidase domain protein 4 2 Op 3 . + CDS 6329 - 6871 654 ## COG0681 Signal peptidase I + Term 6877 - 6904 0.1 + Prom 6888 - 6947 14.3 5 3 Op 1 28/0.000 + CDS 6989 - 7690 315 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 6 3 Op 2 2/0.000 + CDS 7665 - 8567 958 ## COG2177 Cell division protein 7 3 Op 3 1/0.000 + CDS 8576 - 9778 1139 ## COG0739 Membrane proteins related to metalloendopeptidases 8 3 Op 4 . + CDS 9778 - 10935 1289 ## COG0793 Periplasmic protease + Term 10943 - 10990 6.2 + Prom 11011 - 11070 11.6 9 4 Op 1 58/0.000 + CDS 11143 - 14940 4279 ## COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit 10 4 Op 2 . + CDS 14958 - 18539 4196 ## COG0086 DNA-directed RNA polymerase, beta' subunit/160 kD subunit + Term 18557 - 18596 6.1 - Term 18638 - 18669 3.4 11 5 Tu 1 . - CDS 18688 - 20076 1971 ## Amet_0178 S-layer domain-containing protein - Prom 20166 - 20225 16.7 + Prom 20053 - 20112 11.7 12 6 Op 1 56/0.000 + CDS 20354 - 20767 555 ## PROTEIN SUPPORTED gi|169824187|ref|YP_001691798.1| 30S ribosomal protein S12 + Prom 20772 - 20831 6.0 13 6 Op 2 51/0.000 + CDS 20855 - 21325 639 ## PROTEIN SUPPORTED gi|169824188|ref|YP_001691799.1| 30S ribosomal protein S7 14 6 Op 3 30/0.000 + CDS 21347 - 23422 3001 ## COG0480 Translation elongation factors (GTPases) 15 6 Op 4 . + CDS 23440 - 23805 504 ## PROTEIN SUPPORTED gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 Predicted protein(s) >gi|281297525|gb|ADDO01000045.1| GENE 1 1610 - 2596 1257 328 aa, chain - ## HITS:1 COG:aq_1866 KEGG:ns NR:ns ## COG: aq_1866 COG0136 # Protein_GI_number: 15606903 # Func_class: E Amino acid transport and metabolism # Function: Aspartate-semialdehyde dehydrogenase # Organism: Aquifex aeolicus # 1 328 1 336 340 312 50.0 6e-85 MSFNLAIFGATGLVGETMRSILEERNLPINNIYFFASERSAGKKIKFLDKEYQIIELSEE NLKREKIDYALGALDSSLAKKFLPLAAKLGIKIIDNSSAYRMDEDKPLVVPEINPQDAQY EGNIIPSPNCSTIQSVVALYPIYKKYGIKRIVYTTYQAVSGSGKNGLEDLERGMKGQENI FYPYPIIGNVLPHIDDFLENGYSKEEMKMINETKKIFHDNSIKITATTARVPVKTSHMVA INVETKEDFDIKDIFELYKNADGIVLYDDLKNLKYPMPIIAAGKDPVYVGRIRRDISVEH GLDLICVADNMRKGAALNTIQILESLIK >gi|281297525|gb|ADDO01000045.1| GENE 2 2730 - 3893 1270 387 aa, chain + ## HITS:1 COG:BH3422 KEGG:ns NR:ns ## COG: BH3422 COG0460 # Protein_GI_number: 15615984 # Func_class: E Amino acid transport and metabolism # Function: Homoserine dehydrogenase # Organism: Bacillus halodurans # 3 321 6 328 431 213 37.0 4e-55 MTKIALLGFGTVGRGLYNILKEKKELLNSLDINIEISKILVRNLSKYKDIDKNLLTNDYN DIYLDKDIDIVVEMTGDVENSYIYIKKALENGKDVVSSNKAVVSKYFEELMEISQDKGRL FLYEASVGGTIPIVREVKSLSLFNNINKIYGVLNGTCNYILYNMFENNKDYAEVLKEAQE KGFAEHDPTDDVKGFDMRRKLRILMSIICKGKITEDAIEVFGLDKINKIDVSYLSGNYRV KEVCLGQKSGDNYVCIIEPCLFKKDEDLARLEGAYNMVEIYGDYFEKITLKGPGAGSLPT ASAVLQDIIDVIKKNDIRVYGGNDLVNFNDNFEGQYYLRTSGDFPEDFVEREEIYKGQKI IFTKKIKRSDFLNLIKDKDAFFARCIN >gi|281297525|gb|ADDO01000045.1| GENE 3 3977 - 6274 2377 765 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_5883 NR:ns ## KEGG: GYMC10_5883 # Name: not_defined # Def: copper amine oxidase domain protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 29 544 62 584 900 251 31.0 1e-64 MKKRLIIFFMVFSIIITNFIFAENKLNSQEEIAPGVVNFQYTVKTSKGKAILNVLKCDLN NPYIKLNTVAGNGSYTEKASVSQMANRTNAVGLCNGDFFSMALQGVPLGPSIIDGDIKSS PGVLTDIYSFGIDSTNTAYILDTNFGGKVTAPNGTTYNIDGLNKNLYWYQPSKEYSHESK IQMYTDFWTSKSRGDKTAGEVLLNQDNVVEKIIYDKNLDLKIPSGYKILQVSGASATFVK NNIKIGDKLKITYDIYPQKSWKMLIGGHSLLVDNSKIRPYKKDINSIGGTRARTCIGIAD GGKSVYIVSCEGRTKRSSGMSLNELSNFMVNLGCQRALNLDGGGSTAMVVRNLGDLNRTR VINPEGNKAERKVVNGIGVFNTTKNTGQIIDGKLKGNTDLVIGQSTDFSLKSAWDKFLNP IDISDRTYKLSENSNGQNILNGTSYLAMVPGKFNLSLITNKGENISKEINIKDSKAFESL EIISDSRNVKPGDKINFTIEAKVDGKDIKLSPRVFKFQLLDLDGKLDVNSSTVTINKLGT NPKLIASINDKKAELNFLDANAKTVTMNIGKKTYKINGQKAQMDTAPFINNSRTMVPLRF IVEALGYQVDWNGEEKSVFVRTNDINNDIYFKVDSKKINVGEKSITVDTPAIIKGDRTFV PIRFVAEILGMEVSYNANDKEIVLVDKKAKKTNENSITKANNNSLINNNKVDNNVNNNIN KNSNAKNTNSQTNSNHYNITESDLNQLDKDSGELESIILDKNRAK >gi|281297525|gb|ADDO01000045.1| GENE 4 6329 - 6871 654 180 aa, chain + ## HITS:1 COG:CAC2646 KEGG:ns NR:ns ## COG: CAC2646 COG0681 # Protein_GI_number: 15895904 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal peptidase I # Organism: Clostridium acetobutylicum # 4 177 1 183 184 120 40.0 1e-27 MNEVNKEEKKKSSLMDDLKVVIFAVVIALIIRNFVFNLAVVNQTSMFPTLYPKDLVLVDR IVDWTHNYKRGQIVIFKSPEDNKNLIKRLIGKPGDEVHIESGKVYVNGKELDENYLQEGV YTDSYDENTWKLGKDEYFLMGDNRPGSYDCRNFGPIKEKALIGATNNRIYPFKDFGKIDK >gi|281297525|gb|ADDO01000045.1| GENE 5 6989 - 7690 315 233 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 197 4 201 223 125 35 2e-28 MIKFDNVCKEYDNGTRALSNINLQIPKGDFVFFVGPSGAGKSTLIKLLIREEKVSRGRIL IDDIDLSKISEYQVPRLRRNISVVFQDFRLLPKKTVFENVAYALEIIGASRREINKNVGR ALDLVSLSDKKKAHLDELSGGESQRVAIARAIVNNAPILVCDEPTGNLDENTAWDIMKAL ANINDQGTTVIMASHAVNIVNEMKKHVVTLKDGNIVGNIEKGGYYCETCTTTD >gi|281297525|gb|ADDO01000045.1| GENE 6 7665 - 8567 958 300 aa, chain + ## HITS:1 COG:CAC0498 KEGG:ns NR:ns ## COG: CAC0498 COG2177 # Protein_GI_number: 15893789 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division protein # Organism: Clostridium acetobutylicum # 13 300 12 301 301 138 33.0 1e-32 MRLVRQLINVCKEAFKSLWRNKTMAFTSTISIAAMLTLLGVVLLLVLNLNAMVYQTGEKL DKLVFYLKDDAPAVDVNNFIKELTEDARVKKIDYISREDALEEFKEGFGEDVSVFEDMPG GNPLPASITVEMKELSQGLDVKNKYKDLPIVEDVEYQYDFINKMMRFENGLKYVGIAIVA ILFLVSVLIMHNTIKIAIANRENEISIMRYIGATNSYIRGPFLIEGILFGVFGALIATFL TVNFYSYLFERINMELFKITNIDLVGVELVKNDLFIVYLCIGIGIGYLGSLFSTKRFLNV >gi|281297525|gb|ADDO01000045.1| GENE 7 8576 - 9778 1139 400 aa, chain + ## HITS:1 COG:NMB0315 KEGG:ns NR:ns ## COG: NMB0315 COG0739 # Protein_GI_number: 15676232 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane proteins related to metalloendopeptidases # Organism: Neisseria meningitidis MC58 # 252 397 256 388 430 138 46.0 1e-32 MFKNKRKFVIFLVLILFTSVFADSAQLKKQQEQKKKQKEEVKSQMQLKKEKIKNTQGQVT DVEKEIDKLDSKINNTTTQITSLQKDIDKLNIEIEKNQKKLNEAQKNLDDNIDLFRVRIR EMYKRGNIRYLEVIMNSKSIEDLLKNNKNISRIAQADRDLINYISQQIKTIKIAKEKLTN DRNVVNAKKTSLVIERSNYQTAIEAKNQYISKLQENIDLYREEYNKAQAQWDNLDSEIVK LQEQIKKEIQKENAKKMAKSGQGMNIAPSPRAAGKLNWPVPGHTRISSPFGQRFHPILKI YRFHSGVDIPGPAGTPVVAAASGTVIMARQMSGYGNVVMVDHGDIVTVYAHNSRVNVSVG QKVKAGDVVSFIGSTGLSTGPHLHFEVRVNGQPVNPLGYI >gi|281297525|gb|ADDO01000045.1| GENE 8 9778 - 10935 1289 385 aa, chain + ## HITS:1 COG:aq_797 KEGG:ns NR:ns ## COG: aq_797 COG0793 # Protein_GI_number: 15606169 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic protease # Organism: Aquifex aeolicus # 47 384 46 399 408 229 39.0 9e-60 MKKTKRIIIFLAILILTNIATRFVTLHGLFLGTTDKFNNIVQLENFIKKHYLFKVDEKNF EIGELKGAVASLKDPYSEYLSPEEMDALTEETTGKFFGIGVYIAPGEDGLITVISPIKGS PAEKAGLNSGDKILQINGKDYTGDNITEASKAIRGEKDSLVKLLVLKNGSKKPKEISVKR DQVKIASVIEKELGEIGYIGITVFDEDTDKEFGKALDDLVKKNKSGIILDLRGNPGGVVD AAVGICDKILPEGVIVTLKDNQNKIIEEYKSDKNYVDTKMVVLQNGGSASASEILAGAIR DYKRATIVGEKSYGKGIVQTVFPLAKGSGLKLTTAAYFTPSGKSIHKLGIEPDIKVKEPE GIKGIGVDFLDTDTQLQKALEILKK >gi|281297525|gb|ADDO01000045.1| GENE 9 11143 - 14940 4279 1265 aa, chain + ## HITS:1 COG:CAC3143 KEGG:ns NR:ns ## COG: CAC3143 COG0085 # Protein_GI_number: 15896392 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, beta subunit/140 kD subunit # Organism: Clostridium acetobutylicum # 1 1241 1 1227 1241 1603 65.0 0 MVHPVKYGKRERMSFSRVEEVMSLPNLLDVQTSSFDWFIKEGLKEVFDDVSPIEDYSGKL ILEFVDYYISDDIKYDIDESKQRDTNYCAPLKVKVRLINTETGEVKEQEVFMGDLPLMTP TGTFVINGAERVVVSQLVRSPGAYFKEERDKTGKKLYSSTLIPNRGAWLEFETDAAGVIN VRIDRTRKIPITILARAIGVESNREITDILGESEALTKTFEKDTTSNKTEALLEIYKKLR PGEPPTLDSAKSLFENMFFDDRRYDLARVGRYKFNKKLGIEARIENNILAEDAVNPLTGE IIAEKGETLDRAKAFEIENAGINRILLKVLNPFDESESREVIVIGNNFCIPSSFGLNFTL EELGFREKIYFPLFQSIYEEFGSDEEALKEELKKRHNELSPKHIVVDDIVAAINYEFNLM DGVGYTDDIDHLGNRRIRSVGELLQNQFRIGISRMERVIRERMTVQDVEATTPQSLINIR PVTAAIKEFFGSSQLSQFMDQNNPLSELTHKRRLSALGPGGLSRDRAGFEVRDVHNSHYG RMCPIETPEGPNIGLITSLTTYARINEYGFIETPYRKVVDGVVTDKIEYLTADVEYEQII AQSYEKLDEDGRFLEKRIACRGHEGIVDIFDVKDVTYMDVSPQQIVAVGTSMIPFLENDD ANRALMGANMQRQAVPLLSTQAPIVGTGIEYRAAKDSGVVIVSTDDGVIEKVDATHIELR RDKDKVLDTYKLHKFVGGNQGTTINQRPIVNEGQKVKKGEIIADGPSTDMGEMALGKNIL IAFMNWEGYNYEDAVLVNQELVINDTLTSLHIEEYESEARDTKLGPEEITRDIPNVGDDM LKDLDELGVVRIGAEVKPGDILVGKVTPKGETELSAEERLLRSIFGEKAREVRDTSLRLP HGEHGIVVDVKTFKRSEGDELQPGVNEMVRVFVATKRKIQVGDKMCGRHGNKGVISRVLP KEDMPYMPDGTPIQIVLNPLGVPSRMNLGQVLEVHLGLAAKKLGWHVATPVFDGANESDI FESLEKAGYPHDGKIQLRDGRTGEEFDHPVTVGYMYMLKLHHLVDEKIHARSTGPYSLVT QQPLGGKAQFGGQRFGEMEVWALEAYGASYTLQEMLTVKSDDIVGRVKTYEAIVKGENIP QPSIPESFKVLIKELQSLALEIEVLDDDGNPVDLEAEEDDLSRIDAIEEDNEEDVRNLIE TNTSNNNSAIRTISSEEAEALDESFTDDDGDDSYSDSENDDESILGDSSDYFENSDKDYE DIENE >gi|281297525|gb|ADDO01000045.1| GENE 10 14958 - 18539 4196 1193 aa, chain + ## HITS:1 COG:CAC3142 KEGG:ns NR:ns ## COG: CAC3142 COG0086 # Protein_GI_number: 15896391 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, beta' subunit/160 kD subunit # Organism: Clostridium acetobutylicum # 7 1161 6 1160 1182 1571 66.0 0 MSEHELFHSIKIGLASPEKIREWSYGEVKKPETINYRTLKPEKEGLFCEKIFGPTKDWEC ACGKYKRVRYKGVVCEKCGVEVTKAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM SPRALEKVLYFAAYVITSVESGQTTLYEKQLLSEVEYREFKKEYGDKFTAKMGAEAIKEL LAKVDLQKENDELTEELENATGQKKIRITRRLEVIDAFIQSGNDPTWMVLDAIPVIPPDL RPMVQLDGGRFATSDLNDLYRRIINRNNRLKKLMDINAPDIIVRNEKRMLQEAVDALIDN GRRGRPVTGPGNRPLKSLSEMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPDLKFYQCGVP KNMALELFKPFVMRELVKRGLAHNIKSAKRMVERVRDDVWDVLEDVIKDHPVLLNRAPTL HRLGIQAFEPVLVEGKAIKLHPLSCTAYNADFDGDQMAIHLPLSTEAQAEARLLMLSTNN ILGLKDGKPIAIPTQDMILGSYYLTLDRKEKLKGDGSVFCSYDEMMKAYYCGFLHLQAHV KVRRFAGEDDKRGKIVASSVGRFIVNEFIPQDLGFVNRDEDKYSLEVDQVIDKKLLAVII ERTYKKHGNIETAKLLDNIKSYGYHYSTIGAISISMGDVQIPESKPKILEAAQKEVEKYE KAYRRGLISDDERYEKVIDIWNKATDDLTDDVMKGFDRLNNIYIMADSGARGSKNQIRQL AGMRGLMASPSGRTIEVPITSNFREGLSVLEFYMSAHGSRKGLADTALRTADSGYLTRRL VDVSQQIIIQEEDCHTDQYIVARAFKDGKEVIENLADRIAGRYAFEDIIDPNTGEVLVKE NTEISDEDADRIVDAGITEVKVRSVLVCKSKKGVCAHCYGRNLATGNEVGIGEAVGVIAA QSIGEPGTQLTMRTFHTGGVAQAADITQGLPRVEELFEARKPKGLAMIAEHAGEVEIKET NKKKEIIITTTDGLKDAYNVVYGARLKVKSGDFVDAGDELTQGSVYPQDLLRVKGAKGVE EYIVREVQRVYRLQGVDINDKHIEIVVRQMLSKYKIDDAGDTDLLPGSLVEKNEFISVNK EMEEKGLRPAQGQVNLLGITKASLATDSFLSAASFQETTRVLTDAAIKGKEDTLQGLKEN IIIGQLIPAGTGARKNSKVQIGVSDEVKEKYNILENSEIIEKKDLVEATSEEE >gi|281297525|gb|ADDO01000045.1| GENE 11 18688 - 20076 1971 462 aa, chain - ## HITS:1 COG:no KEGG:Amet_0178 NR:ns ## KEGG: Amet_0178 # Name: not_defined # Def: S-layer domain-containing protein # Organism: A.metalliredigens # Pathway: not_defined # 43 211 33 188 188 96 35.0 3e-18 MKINKKIAAGALTLAMLSTSISSVFAFNLPKVDKAINNSQKIDVLKKANLIHGYADGSLG LDKSLTRSELTTLIVFAIGEDKKAESLKNEESPFKDVDKKYWANGIIKVGVEVKNAKGLK LIHGYPDKTFKGENKITYAELLTILDILKSDKIDEKAAKDASWPKDWIKWAEELKIIGKD SGIEIKDYNKEANRNDAFVLLYNTLASEISEKREDKKEDKSNIEGVKKDIKAYLEALDKN NVLVTLNSVAGDDGFEGRIPKKSKAYDELSSAIDKAKALLAKKELTSDEEKELINLQPKL HEKKDKLTKGLAELASNFVVDWHVVGDRDFKATHGKSYTELKDNQIKIESKATTLAEDKV KIGLAVVKSNDYENAKVDAVSGSTPKYEKSKLDKKFYDVTRTATGFLITLKTNEAGFDEA MKDVKIIKPVVKVTLAETTAKRGDKEVKAVTEIENGDLVFVK >gi|281297525|gb|ADDO01000045.1| GENE 12 20354 - 20767 555 137 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169824187|ref|YP_001691798.1| 30S ribosomal protein S12 [Finegoldia magna ATCC 29328] # 1 136 1 136 137 218 78 3e-56 MPTINQLVKNGRKKIHTKSKSPALDVNYDTLKKTETEANSPQKRGVCIAVRTVTPKKPNS ALRKVARVRLTNGYEVMAYIPGIGHNLQEHSVVLIRGGRVKDLPGVRYHIIRGTLDTAGV TDRKQARSKYGTKKPKN >gi|281297525|gb|ADDO01000045.1| GENE 13 20855 - 21325 639 156 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169824188|ref|YP_001691799.1| 30S ribosomal protein S7 [Finegoldia magna ATCC 29328] # 1 156 1 156 156 250 75 5e-66 MPRKGHIQKREVMADPVYDDVVITKLINNVMLDGKKGTAQRIVYSAMEKIAEQTGEEAIE VFYKALNNVMPVLEVKGRRIGGATYQVPMEVRPERRQTLGLRWLVKYARARGEHTMDDRL AKEILDASNNLGGSVKRKEEMHRTAEANKAFAHYRW >gi|281297525|gb|ADDO01000045.1| GENE 14 21347 - 23422 3001 691 aa, chain + ## HITS:1 COG:CAC3138 KEGG:ns NR:ns ## COG: CAC3138 COG0480 # Protein_GI_number: 15896387 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factors (GTPases) # Organism: Clostridium acetobutylicum # 1 689 1 687 687 976 70.0 0 MPREIPLKKVRNIGIMAHIDAGKTTTTERILFYAGKIHKIGETHEGAAQMDWMEQEQERG ITITSAATTCYWKGYRLNIIDTPGHVDFTVEVERSLRVLDGAVALFDAKSGVEPQSETVW RQADKYHVPRICHINKMDVTGADFFRSVNTIEKKLHANPVAIQIPMGAEDKFIGMIDLVR MEAEIYTDDLGQVIDKTDIPEEYLDLANEYRDKMIEKAADFDDELMDKYLEGEEISEELI KRALRKGTLAVKLTPVLCGSSYKNKGVQLLLDAVIDYLPAPIDVPPIEGTDLQGNPVERH ASDDEPFSALAFKIVTDPYVGKLAYFRVYSGVLKAGSYVTNSTKGKRERIGRILQMHANK RTEIDEIYAGEIAAAVGLKDTTTGDTLCDEKNQVILEKMEFPEPVISVAIEPKTKASQDK MAIALQKLAEEDPTFRTYTNEETGQTIIAGMGELHLDIIVDRLLREFKVEANIGNPQVSY RESITKPAEGEGKYVRQSGGRGQYGHAKIKIEPLKDGQGFVFENAIVGGAIPKEFIGPTQ QGIEEALQSGILGGYEVLDLKVTLYDGSYHEVDSSEMAFKIAGSMALRDAMAKAGPVLLE PVMKVEITTPEEYMGDVIGDINSRRGRMEGMELVAGAQIVTSYVPLAEMFGYATSLRSNT QGRANYSMQFDHYEEVPKSIAEEVLGDKKNK >gi|281297525|gb|ADDO01000045.1| GENE 15 23440 - 23805 504 122 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 [marine gamma proteobacterium HTCC2080] # 1 122 1 121 407 198 79 2e-50 MAKAKFERNKPHVNVGTIGHVDHGKTTLTAAITLVLNKRYGSGEFIDYAHIDKAPEERER GITISTSHVEYETPNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREH IL Prediction of potential genes in microbial genomes Time: Mon Jul 18 12:33:49 2011 Seq name: gi|281297523|gb|ADDO01000046.1| Peptoniphilus lacrimalis 315-B contig00075, whole genome shotgun sequence Length of sequence - 456 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 5 - 455 177 ## COG3464 Transposase and inactivated derivatives Predicted protein(s) >gi|281297523|gb|ADDO01000046.1| GENE 1 5 - 455 177 150 aa, chain + ## HITS:1 COG:SP0836 KEGG:ns NR:ns ## COG: SP0836 COG3464 # Protein_GI_number: 15900723 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Streptococcus pneumoniae TIGR4 # 1 149 166 313 418 106 40.0 2e-23 MSFICTNSITGEIIDILPDRRLFKLYTYFLRFPRRVRDQVKIVVCDIYSPYMELVKKVFK NACIVLDKFHIVQNFTRAFNMARVQLMKKYKTDSHEYRCLKRYWKLLLLPKANLISTHFK SYPCFKGFISQKEIVEHILDFDYSFRMIYD Prediction of potential genes in microbial genomes Time: Mon Jul 18 12:33:50 2011 Seq name: gi|281297521|gb|ADDO01000047.1| Peptoniphilus lacrimalis 315-B contig00014, whole genome shotgun sequence Length of sequence - 3018 bp Number of predicted genes - 3, with homology - 0 Number of transcription units - 3, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 10 - 69 2.3 1 1 Tu 1 . + CDS 250 - 372 212 ## + Prom 1043 - 1102 80.3 2 2 Tu 1 . + CDS 1265 - 1342 56 ## - Term 1273 - 1304 -0.8 3 3 Tu 1 . - CDS 1396 - 1650 284 ## + LSU_RRNA 1787 - 2120 91.0 # EF116578 [D:1..2910] # 23S ribosomal RNA # Pediococcus claussenii # Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Pediococcus. + LSU_RRNA 2260 - 2827 91.0 # CP000853 [D:13101..16036] # 23S ribosomal RNA # Alkaliphilus oremlandii OhILAs # Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus. Predicted protein(s) >gi|281297521|gb|ADDO01000047.1| GENE 1 250 - 372 212 40 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKRTRGTETSKYPEEEKETSIPRVAASEKGTAQVQTKKRT >gi|281297521|gb|ADDO01000047.1| GENE 2 1265 - 1342 56 25 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MEEEAKGVTHCGYHTRENAGMSSER >gi|281297521|gb|ADDO01000047.1| GENE 3 1396 - 1650 284 84 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MYVAFLGSVDSYLSLLVFDLHHTSDFSRSGFAYSLSFVLARLTNWALLLSSCVPTYFNDC IGTGFSTCCPSTTLFSLALGPDLP Prediction of potential genes in microbial genomes Time: Mon Jul 18 12:34:05 2011 Seq name: gi|281297519|gb|ADDO01000048.1| Peptoniphilus lacrimalis 315-B contig00059, whole genome shotgun sequence Length of sequence - 811 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 2 - 61 6.4 1 1 Tu 1 . + CDS 89 - 790 783 ## CLOST_2427 exported protein of unknown function Predicted protein(s) >gi|281297519|gb|ADDO01000048.1| GENE 1 89 - 790 783 233 aa, chain + ## HITS:1 COG:no KEGG:CLOST_2427 NR:ns ## KEGG: CLOST_2427 # Name: not_defined # Def: exported protein of unknown function # Organism: C.sticklandii # Pathway: not_defined # 1 162 1 165 323 82 30.0 1e-14 MKKILSFLLIFTVLIPCTIFAGTEKQVAQKTPQKIQLDGEEVQIPAYIIQGKNYVKLRDF AAILSKTNKKFDISFDKQKKAVVIESGKAYNKTDKDLKENKEASAKATFSEQIVLLDNKE VKVQTANIMDNNYLPIRDLAELVGVKITFNNEKKIVELKTEEKKCCCCGEKTCTCSGDKE KGCTCQCKLHDKDEKECPHCKKCQKSMENKEAKENNSKSENNNKECGCCSSMK Prediction of potential genes in microbial genomes Time: Mon Jul 18 12:34:09 2011 Seq name: gi|281297518|gb|ADDO01000049.1| Peptoniphilus lacrimalis 315-B contig00069, whole genome shotgun sequence Length of sequence - 362 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 360 610 ## gi|304440580|ref|ZP_07400466.1| thrombospondin type 3 repeat superfamily protein Predicted protein(s) >gi|281297518|gb|ADDO01000049.1| GENE 1 3 - 360 610 119 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|304440580|ref|ZP_07400466.1| ## NR: gi|304440580|ref|ZP_07400466.1| thrombospondin type 3 repeat superfamily protein [Peptoniphilus duerdenii ATCC BAA-1640] thrombospondin type 3 repeat superfamily protein [Peptoniphilus duerdenii ATCC BAA-1640] # 12 119 164 264 3019 74 50.0 2e-12 FTAKATAKTAPDNTKDDVVPWVPGTDEEPTKGSDNKTIPSDYITVTFKSEDETKGKVKVG DKTAKEVKAKVKPGTDLSKVKVKGKDEALIQAVPEKGYGSVWDPALGVAQADKTYTAKF Prediction of potential genes in microbial genomes Time: Mon Jul 18 12:34:21 2011 Seq name: gi|281297517|gb|ADDO01000050.1| Peptoniphilus lacrimalis 315-B contig00049, whole genome shotgun sequence Length of sequence - 1765 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - SSU_RRNA 143 - 1547 99.0 # AF542230 [D:1..1406] # 16S ribosomal RNA # Peptoniphilus lacrimalis # Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis; Peptoniphilus. Prediction of potential genes in microbial genomes Time: Mon Jul 18 12:34:22 2011 Seq name: gi|281297514|gb|ADDO01000051.1| Peptoniphilus lacrimalis 315-B contig00024, whole genome shotgun sequence Length of sequence - 1623 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 2/0.000 + CDS 100 - 1083 1017 ## COG0582 Integrase 2 1 Op 2 . + CDS 1098 - 1623 220 ## COG0732 Restriction endonuclease S subunits Predicted protein(s) >gi|281297514|gb|ADDO01000051.1| GENE 1 100 - 1083 1017 327 aa, chain + ## HITS:1 COG:SP0890 KEGG:ns NR:ns ## COG: SP0890 COG0582 # Protein_GI_number: 15900773 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Streptococcus pneumoniae TIGR4 # 9 326 8 320 321 389 63.0 1e-108 MKQDLIKDVVQGMLPYLNNAQNEKLQEVLQYTLASYDVTESKQQKKTSEQNFVELFLSAK RIEGCSEKSLKYYKSTIEAMLDELKKDVKRIVTDDIREYLTEYQEKKKSSKVTIDNIRRI LSSFFSWLEDEDYILKSPVRRIHKVKTGTNIKETYSDEALELMRDNCTELRDLAIIDMLA STGMRVGEMVLLNRNDIDFNERECIVFGKGSKERVVYFDARTKIHLQNYLKSRTDDNPAL FVSLKSPHERLKIGGVEVRLREYGKKLGLQKVHPHKFRRTLATMAIDKGMPIEQLQQLLG HRKIDTTLQYAMVKQSNVKIAHRKYIG >gi|281297514|gb|ADDO01000051.1| GENE 2 1098 - 1623 220 175 aa, chain + ## HITS:1 COG:HI1286 KEGG:ns NR:ns ## COG: HI1286 COG0732 # Protein_GI_number: 16273200 # Func_class: V Defense mechanisms # Function: Restriction endonuclease S subunits # Organism: Haemophilus influenzae # 1 175 1 172 459 98 30.0 6e-21 MADWRTFRLGKIVLTNQSTYSPKEDWRFVNYLDTGNITMNRIDEIQYINTSTDKLPSRAR RKVKLNSIIYSTVRPNQLHYGIIKEQPENFLVSTGFVVIDVDFEKAVPDYIYYVLTQQEI TEHLQAIAEQSMSTYPSIKPSDIENLELLLPDRKTQEKIVTILSSIDEKIKQNNE Prediction of potential genes in microbial genomes Time: Mon Jul 18 12:34:43 2011 Seq name: gi|281297454|gb|ADDO01000052.1| Peptoniphilus lacrimalis 315-B contig00053, whole genome shotgun sequence Length of sequence - 73376 bp Number of predicted genes - 59, with homology - 59 Number of transcription units - 27, operones - 13 average op.length - 3.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 4 - 63 5.2 1 1 Op 1 2/0.000 + CDS 83 - 1024 624 ## COG1481 Uncharacterized protein conserved in bacteria 2 1 Op 2 . + CDS 1017 - 1283 450 ## COG1925 Phosphotransferase system, HPr-related proteins 3 1 Op 3 3/0.000 + CDS 1338 - 4775 2969 ## COG0587 DNA polymerase III, alpha subunit 4 1 Op 4 12/0.000 + CDS 4784 - 5740 925 ## COG0205 6-phosphofructokinase 5 1 Op 5 . + CDS 5749 - 7500 2090 ## COG0469 Pyruvate kinase + Term 7534 - 7579 3.2 - Term 8018 - 8062 5.1 6 2 Tu 1 . - CDS 8163 - 9707 1160 ## SOR_0489 Mga-like regulatory protein - Prom 9782 - 9841 17.4 7 3 Op 1 . + CDS 10268 - 11725 1824 ## BL0675 fimbrial subunit FimA 8 3 Op 2 . + CDS 11764 - 12591 595 ## COG3764 Sortase (surface protein transpeptidase) 9 3 Op 3 . + CDS 12636 - 13604 862 ## bpr_I0897 LPxTG motif-containing cell surface protein 10 3 Op 4 . + CDS 13594 - 17523 3233 ## Sez_1822 fimbrial structural subunit protein FszD 11 3 Op 5 . + CDS 17516 - 18100 757 ## bpr_I0898 sortase + Term 18283 - 18326 -0.4 - Term 19081 - 19123 6.3 12 4 Tu 1 . - CDS 19145 - 20230 1270 ## gi|282882674|ref|ZP_06291284.1| conserved hypothetical protein - Prom 20353 - 20412 10.4 - Term 20425 - 20464 4.1 13 5 Tu 1 . - CDS 20495 - 22096 461 ## PROTEIN SUPPORTED gi|163803542|ref|ZP_02197411.1| 30S ribosomal protein S20 - Prom 22330 - 22389 6.5 + Prom 22470 - 22529 2.0 14 6 Op 1 7/0.000 + CDS 22554 - 23327 1133 ## COG1540 Uncharacterized proteins, homologs of lactam utilization protein B 15 6 Op 2 1/0.000 + CDS 23350 - 24600 1475 ## COG1914 Mn2+ and Fe2+ transporters of the NRAMP family 16 6 Op 3 21/0.000 + CDS 24612 - 25358 962 ## COG2049 Allophanate hydrolase subunit 1 17 6 Op 4 . + CDS 25351 - 26295 1278 ## COG1984 Allophanate hydrolase subunit 2 + Term 26306 - 26340 3.2 + Prom 26385 - 26444 6.3 18 7 Tu 1 . + CDS 26489 - 27781 1578 ## COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain + Term 27813 - 27866 11.0 + Prom 27877 - 27936 12.0 19 8 Op 1 9/0.000 + CDS 28146 - 29048 872 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily + Term 29107 - 29146 3.6 + Prom 29072 - 29131 8.2 20 8 Op 2 . + CDS 29152 - 30036 778 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily + Prom 30040 - 30099 16.7 21 9 Tu 1 . + CDS 30131 - 30760 815 ## Palpr_0844 hypothetical protein + Term 30766 - 30798 2.5 - Term 30740 - 30796 8.0 22 10 Op 1 11/0.000 - CDS 30798 - 31946 1262 ## COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components 23 10 Op 2 21/0.000 - CDS 31939 - 33015 1138 ## COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components 24 10 Op 3 . - CDS 33005 - 34606 206 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 - Term 34618 - 34661 3.1 25 10 Op 4 . - CDS 34668 - 36008 1741 ## Taci_0120 hypothetical protein - Term 36369 - 36405 -0.1 26 11 Op 1 . - CDS 36409 - 36576 280 ## gi|282882643|ref|ZP_06291253.1| conserved hypothetical protein 27 11 Op 2 1/0.000 - CDS 36588 - 37376 971 ## COG1659 Uncharacterized protein, linocin/CFP29 homolog 28 11 Op 3 . - CDS 37390 - 37743 562 ## COG3461 Uncharacterized conserved protein - Prom 37855 - 37914 7.6 - Term 37891 - 37917 0.3 29 12 Tu 1 . - CDS 37924 - 38088 414 ## COG1773 Rubredoxin - Prom 38134 - 38193 11.7 + Prom 38079 - 38138 10.0 30 13 Tu 1 . + CDS 38299 - 38700 484 ## FMG_1043 hypothetical protein + Term 38839 - 38881 -0.1 31 14 Tu 1 . - CDS 38755 - 40062 1070 ## COG1757 Na+/H+ antiporter - Prom 40104 - 40163 10.0 + Prom 40066 - 40125 11.3 32 15 Op 1 24/0.000 + CDS 40282 - 42189 2518 ## COG0845 Membrane-fusion protein 33 15 Op 2 36/0.000 + CDS 42191 - 42871 305 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 34 15 Op 3 . + CDS 42871 - 44124 329 ## PROTEIN SUPPORTED gi|163788031|ref|ZP_02182477.1| 50S ribosomal protein L9 + Term 44146 - 44190 -0.7 + Prom 44163 - 44222 13.5 35 16 Tu 1 . + CDS 44305 - 45030 565 ## COG1496 Uncharacterized conserved protein + Term 45057 - 45103 4.6 + Prom 45070 - 45129 8.0 36 17 Op 1 35/0.000 + CDS 45194 - 46942 250 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 37 17 Op 2 . + CDS 46939 - 48660 229 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 38 17 Op 3 . + CDS 48671 - 49264 621 ## SGGBAA2069_c10680 hypothetical protein 39 17 Op 4 34/0.000 + CDS 49254 - 49949 394 ## COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters 40 17 Op 5 . + CDS 49943 - 51358 1078 ## COG1122 ABC-type cobalt transport system, ATPase component 41 17 Op 6 . + CDS 51339 - 52262 851 ## COG2207 AraC-type DNA-binding domain-containing proteins + Term 52263 - 52324 10.9 + Prom 52295 - 52354 13.5 42 18 Tu 1 . + CDS 52484 - 55186 2763 ## COG0474 Cation transport ATPase + Term 55204 - 55253 10.2 - Term 55191 - 55241 10.4 43 19 Tu 1 . - CDS 55294 - 56334 1045 ## COG1024 Enoyl-CoA hydratase/carnithine racemase - Prom 56410 - 56469 11.3 + Prom 56361 - 56420 13.0 44 20 Op 1 8/0.000 + CDS 56445 - 56816 477 ## COG1725 Predicted transcriptional regulators 45 20 Op 2 . + CDS 56825 - 57664 879 ## COG1131 ABC-type multidrug transport system, ATPase component 46 20 Op 3 . + CDS 57664 - 58284 334 ## gi|282882654|ref|ZP_06291264.1| NADH dehydrogenase subunit 4l 47 20 Op 4 . + CDS 58286 - 58885 330 ## gi|282882687|ref|ZP_06291297.1| putative heme maturase + Term 58889 - 58918 2.1 - Term 58876 - 58906 2.3 48 21 Tu 1 . - CDS 58920 - 60209 1713 ## COG0172 Seryl-tRNA synthetase - Prom 60411 - 60470 11.3 + Prom 60370 - 60429 8.3 49 22 Op 1 . + CDS 60541 - 61449 1044 ## COG0714 MoxR-like ATPases 50 22 Op 2 . + CDS 61442 - 63148 1330 ## FMG_1176 hypothetical protein + Prom 63160 - 63219 6.2 51 23 Tu 1 . + CDS 63266 - 63742 575 ## COG3467 Predicted flavin-nucleotide-binding protein + Term 63749 - 63788 6.3 52 24 Tu 1 . - CDS 63836 - 65206 1418 ## COG0534 Na+-driven multidrug efflux pump - Prom 65234 - 65293 12.9 + Prom 65260 - 65319 11.9 53 25 Op 1 . + CDS 65431 - 67029 1479 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains 54 25 Op 2 . + CDS 67047 - 68414 1314 ## COG1680 Beta-lactamase class C and other penicillin binding proteins + Term 68522 - 68553 0.1 + Prom 68430 - 68489 4.1 55 26 Op 1 . + CDS 68585 - 69769 1310 ## COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family 56 26 Op 2 . + CDS 69759 - 70616 819 ## Nther_2740 alpha/beta hydrolase fold + Term 70717 - 70783 30.0 + TRNA 70695 - 70771 92.8 # Pro TGG 0 0 + Prom 70702 - 70761 80.4 57 27 Op 1 31/0.000 + CDS 70895 - 71782 1463 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain + Term 71783 - 71826 5.2 58 27 Op 2 34/0.000 + CDS 71845 - 72522 711 ## COG0765 ABC-type amino acid transport system, permease component 59 27 Op 3 . + CDS 72515 - 73237 614 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 Predicted protein(s) >gi|281297454|gb|ADDO01000052.1| GENE 1 83 - 1024 624 313 aa, chain + ## HITS:1 COG:CAC0513 KEGG:ns NR:ns ## COG: CAC0513 COG1481 # Protein_GI_number: 15893804 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 1 308 1 313 317 236 42.0 4e-62 MSFSSNVKEELSKLPVSGYEIVLAELSGLVPMCGILSYNNGKIFLEFNTENPSLTRRVFT FLRRYFDFNCEVRNVKSKQLKKNLYTISLDEDSSKVLLDELKFIKGENVFTRNYKPLNLT QDVLGKKAYIRGSFLGAGIVVDPKKSYHLEFVCNNLEHAQFLRDNINYFNLGAKIVSRKD NLIIYLKDAQSISDILSLMGAHNSLLDFENTRVIKDMRNNVNRIVNCESYNINKIVKTSY NQVQNILYIKEHLGLDKISDDLREICLIRLKHRDISLGEIGKMLKPPLSKSTINYRFKKI NNIANKLRGDLND >gi|281297454|gb|ADDO01000052.1| GENE 2 1017 - 1283 450 88 aa, chain + ## HITS:1 COG:SA0934 KEGG:ns NR:ns ## COG: SA0934 COG1925 # Protein_GI_number: 15926669 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, HPr-related proteins # Organism: Staphylococcus aureus N315 # 1 84 1 84 88 73 46.0 1e-13 MTNKSITLTNEDGLHARAAALFVREANKFSSEISLEAHEEKVNGKSIIGIMSLGAFKGEK VTIYADGSDEKEAVDTLYKLIGNEFAKI >gi|281297454|gb|ADDO01000052.1| GENE 3 1338 - 4775 2969 1145 aa, chain + ## HITS:1 COG:CAC0516 KEGG:ns NR:ns ## COG: CAC0516 COG0587 # Protein_GI_number: 15893807 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit # Organism: Clostridium acetobutylicum # 3 1143 10 1167 1167 1063 48.0 0 MSNFIHLHVHSEYSLLDASTKIEEIPVRAKELGMKAVALTDHGNMYGAIDFYKACKKVGV KPIIGCEIYVSQKSLYLKDRTNERYHLVLLAENNQGLKNLMKIVSIAFVDGYYYKPRVDL DVLKKYSKGIIATSACLAGEVQRLIQRRDYDGAKKAALRYRDIFGKDNFFLELQDHGIPE QKRVNRELNRLSKETGISLSCSNDVHYLKKEDAKATDVLLCIQTGSKIKDEKRMKFPTEE FYLKSAEEMENIFSDNLDAINNTGIIADRCNVDFEFGHYHLPEFKVPSGYTNESYLEKLA KEGLNKRYKVIDKKIKDRFNMEFQTITQMGFVDYFLIVWDFINYAKKNNIQVGPGRGSAA GSIISYGLGIIDIDPLKFDLLFERFLNKERVSMPDIDIDFCYERREEVIDYVCEKYGDER VAQIVTFGTMQSRQAIRDVGRVLDIAYSRVDYIAKQVPHALKMTLDKALDISESFKELYE KDKEARNLIDIAKRIEGLPRHTSTHAAGVVISKNPLTDYVPLTRNDQIIATQFNMIQLEE LGLLKMDFLGLRTLTVLRDAISLVYDNYKVKIDFSEFTYDDEKVLKMFAKAETLGVFQFE SSGMRLFLKELKPDAFSDLVAANALFRPGPMKQIPKFIESKHDKSKISYIHPILEPILKD TYGCIVYQEQVMQIVQIVGGYSLGRADIVRRAISKKKMAVMEEERKNFIYGNEKENVCGA IKNGVDEKSANEIYDLIIDFADYAFNKSHSVAYSVIAYRSAWIKYYYPREFMAAQISTYT SDIKQVSLYIEELKRLGIGLLPPNVNYSQKNFTVEGKKIRFGLKAVKNVGENLIEAIVQA RDKLGNFTSLWDFVDKVQKVSAQVLNKKALESLIRCGALDDFDGNRAQYLAVYEKVMENN QKSIRNNIRGQVTLFGNLNKSEDLPNLKDFSLRDKLNMEKEVIGIYVSGHPLDDYRPALI SFSNTNTGEIFESYNSSSLIQNKDIRIAGLLKNKKTMITKTNKVMAFASLEDLFGTIELI IFPKTYSQYKNLIEDGKVLAIMGHISSSDVEDPKIIVDSLIQIQEPSDKKLYISIKSMAD KNILVGIKEVLKSYRGNVPVIFYDESQKKSYGTDMSIWINEKEIENIKLELLVYLNENPN KIILK >gi|281297454|gb|ADDO01000052.1| GENE 4 4784 - 5740 925 318 aa, chain + ## HITS:1 COG:CAC0517 KEGG:ns NR:ns ## COG: CAC0517 COG0205 # Protein_GI_number: 15893808 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphofructokinase # Organism: Clostridium acetobutylicum # 3 317 4 318 319 308 49.0 9e-84 MNIAILTSGGDAPGMNPLIRAVVRSGIYYGHKVYGIESGYQGLIEGKVIELNESSVGDVI QKGGTFLGTSRSPSFQEQDGFNKAINVLDIFNIDVLIVCGGDGSLKGALKLKNAGIKVMG IPASIDNDLAYTDYTIGFMTCLETLCGLISKIRDTTESHGRANVVEVMGRNCGDIALYAG LAGGAENILVPECPTDIDEIAKKAILGKNRGKRHHIILISEAMGSPYEFADKFQSLTGID TKVTIPGYIQRGGSPCVFDRILASQMGFRAIEEINKNNFNLAIGTRKESIITRNLEEIFS EESKFSYNLLNILKIISI >gi|281297454|gb|ADDO01000052.1| GENE 5 5749 - 7500 2090 583 aa, chain + ## HITS:1 COG:BH3163_1 KEGG:ns NR:ns ## COG: BH3163_1 COG0469 # Protein_GI_number: 15615725 # Func_class: G Carbohydrate transport and metabolism # Function: Pyruvate kinase # Organism: Bacillus halodurans # 1 474 1 473 473 438 50.0 1e-122 MRRTKIVATIGPACDDLETLREIFLRGVDVARLNFSHGNHEEHRKRIEKIKKLREELKIP IAIMLDTKGPEIRLLDFKDNKKVNLKAEETFILTTREILADDKIASVSYKNLPRDIKVGA KILIDDGLVGLKVQKISGEDIYTVVENGGEISSHKGVNVPDTNLSLEALTESDIEDLKFG VEMGVDFIAASFVRTKEDIYNIRKVLEEAGDFSTLIISKIESKSAMDNIDEIIDASDGIM VARGDLGVEIETEEVPIAQKQIIKKCNLKGKAVITATQMLDSMMRNPRPTRAEANDVSNA VLDGTSAVMLSGETAGGSFPVQAVETMRKIVEVTEKSMDFSQILQRKIEEISNTTTNAIG KSTCQMARDLGVKLILTATTSGNTSRAISKFRPECLILAATPDTKVRRQLNLEWGVKSIL LDNYEDIDLMISEAIEEAKKENYLSSGDKVIVTAGVPVGLSGSTNLIKIENIEEIIARGT GLGNGKITAKAIVVNELNDLVNFFKNGNIIVSKFTNKEMMPYIKRAGGLVTEKAGYTSHG AVVGVSLAIPTIVGAKNITEKIKTGDIISINSTDGTISQGNIH >gi|281297454|gb|ADDO01000052.1| GENE 6 8163 - 9707 1160 514 aa, chain - ## HITS:1 COG:no KEGG:SOR_0489 NR:ns ## KEGG: SOR_0489 # Name: not_defined # Def: Mga-like regulatory protein # Organism: S.oralis # Pathway: not_defined # 21 472 22 471 493 99 22.0 3e-19 MLVNEQDKKLMSLMAYLYRNNNKWLNLRDLMLYIKVSRKTLNSYIDRLEYTFSDLVKFTI SGSMLKINLDSKFGLLTMQRTFLNKSLIINILKQTFFQTNIDKLDIAINFNVSETSIYRS IKFLNNSLDGVYDLNYSYSDLHFIGNEEEIRKFYINLFIETNSSPKNWVFSDLLNQESVN VIVRNIIPYIHGEICYTHFEYIKFGIAVSIIRFKQGYKIDSNRNNNQLINIVQALSKNQE IINFIKKEFPKSVCSLEDVLYQILVYFFSDNFLFFILDPREVIGDKFDYYKYYSYYEKNI NFLIEKYNLTVKNKKELYKQIFTYFKFKISNVDGVDFFVDHSKYFLDYVKFFNLEFHKDL SLILQDYLNLFHSDSKYKLDDLIYNFYILWPDLIPQLIKSSMKPKVLIISHYDYYYAKTL ESIINLWFENVMDIQTFNECEINFEKLRQSNYDVVISDFVINDDIGDKVIFSFEQLPSMN EISDLILEIFQKHIESILKKYPEEFKTFGKTLGY >gi|281297454|gb|ADDO01000052.1| GENE 7 10268 - 11725 1824 485 aa, chain + ## HITS:1 COG:no KEGG:BL0675 NR:ns ## KEGG: BL0675 # Name: not_defined # Def: fimbrial subunit FimA # Organism: B.longum # Pathway: not_defined # 1 468 1 507 525 164 30.0 6e-39 MKNKIQKIFRMMLALVLLLTSMGINNVFAAENGSITVNGTTNGKSYGVYKIFDLTYEGDN VSYTIANEWKDFFKTGKGKDYIVSQNTGNLNPIVLDDQVKYININDNNIADFAKAAMAEM PNKTRQAVQTANGDTITFSNLSLGYYLVHPEGATELADGQVSIVSLTSTKPSGTVVVKGK YPTIKKVADKKSADYDEKITFTVTGKVPDSTGYSKYEYVLKDTLPKGLTIDKDSIKVTIN GTVQTAHITKTVEGQNITVTFNILEIVKNNNVKAGQEIKVTYDTRVNKDFDLGNVGEENK AHVEFSNDPKDDTKKDKTPEEEVKVYSGKIKIVKYAKGNEATKLKGAEFVLKNSEGKYYK LEETNDKKKVTWVSEIGQATVLTSDNNGELEFKGLKAGIYKLKETKAPKGYNLLTQEETV ELKDGSGNTGTEIKMEATSKIENSSGTELPKVGGAGTKLFSLIGGAVIIYAVLSLVRGKI KLQER >gi|281297454|gb|ADDO01000052.1| GENE 8 11764 - 12591 595 275 aa, chain + ## HITS:1 COG:SP0466 KEGG:ns NR:ns ## COG: SP0466 COG3764 # Protein_GI_number: 15900382 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sortase (surface protein transpeptidase) # Organism: Streptococcus pneumoniae TIGR4 # 19 274 3 255 279 161 37.0 2e-39 MEKKKSIFLKILLVIGFLIFFYPNISDYVNSFTQTKGIINYEKSLDEFDKVDIQKIKDDA VLYNKKIFAEKDVIYNPNLVGGYKENLNPFNDEMMGFLKIEKIGVCLPIYHGVNEGVIQK GVGHLPGTSLPIGGKSTHAALSTHSGLPSAKLFTDLHKLDIGDKFIVSVLGEDLYYQVIH KEIVLPKDVEALKVCEGKDYVTLFTCTPYGINTHRLLVRGERINSPTISKDEKSNDVVKK NLFLTIIKLVSMFGLIIIIILSIIKDFIDLRKGKA >gi|281297454|gb|ADDO01000052.1| GENE 9 12636 - 13604 862 322 aa, chain + ## HITS:1 COG:no KEGG:bpr_I0897 NR:ns ## KEGG: bpr_I0897 # Name: not_defined # Def: LPxTG motif-containing cell surface protein # Organism: B.proteoclasticus # Pathway: not_defined # 14 317 24 370 370 108 28.0 4e-22 MKGMNKRKLVCFFVLLFSFILNFQNIYASNITNSPEQIDFTISYIDGSHKIQGAEFNIYK IGDVDKNNNIILREEFKKYPIKDNKSIRTQWNEYANTLKGYVIKDNVKALYKGKTDKNGL LNTKLQKGLYLIVGEDLVTEKYKYVTSPFIVLLPELDKETGKYLNKTTAYPKFTKEENLK NKINIDVLKVWDDDGYENKRPSFIEVELLADGKLKENVKLNKKNNWTYVWKNLDPGISWT VVEKNVNKDIYRVKVTNYENSFVITNIYIPPYTPPNNPPKKPPMIPQTGQLWLPVYLLSG LGIVSIVIGYIKEKKEGESYEK >gi|281297454|gb|ADDO01000052.1| GENE 10 13594 - 17523 3233 1309 aa, chain + ## HITS:1 COG:no KEGG:Sez_1822 NR:ns ## KEGG: Sez_1822 # Name: fszD # Def: fimbrial structural subunit protein FszD # Organism: S.equi # Pathway: not_defined # 833 1273 372 820 967 207 34.0 4e-51 MKNKLLKFINVFLATIMIFSNFSPVFASANNDDNLSVYKQSIIQKSTTQNTISDQNIFNE QNEEDNNSSNNDSNDKKQSLDTEKTQLSEEDENFIKNLKSMIENKDFNIVGEDEDKVESD DVDGLNKLKIIKVNEETSYTNLFMNQEESYQDYKCIDLEAKDNKTINEINIYANESVEII KKLFTEEQIVKIQEILNRIEAYLGENEQVNHYGEIKNLIEELRSIKALYSLEDQGISVKK ESSLENGNTRFLSLENKNPENNKIKLLIKINKYKEEKNDSLIRLVVKNETEEDQFSIVNE KDMPNYRSLSTMLYSNDIPVRDTETIEPDDIAPPNYLNLLANMPGASATVEPGPGVNGDD WTYQKDVIELPANTETYSEALWNGDWSEASTTLFSQFKGNDATVVRFKPSDPRARNYRKN MDAGWDRKDLNLATTRMWVKVKYKNAAYYKNEIVDCEAIIKVTPMKNRNENSYNDEDYGE DPYYPILQISHNLYKGWCWQNVREINVELVFKRKNGEVIKFDSSTFDGKNATYFTINSLH EASEHRDGSIHYLGPEYVRPDEATITGAYVIPGSNIQTSYNGGYSSGIQYAYNGGTNKWD GDDPSHPDWSKNSVLFTTANTQRLNFTMGNLMRDPEWGYVPRTNFVWTSMSTQSFANYYV NYKDIEIIKSWIDGDEVHKPIRVKLLQNYKVKIKFNNGWGNETRDIEIKNLFKDSTDLTE SGNWKSGFYRIPDEESQTKLIKRNYRKDKRQLLEDAGSNFPQYIPNNFEIEEVYDFKYSI SEVKVSGYTTNIEKSTDINPENDLNKDIYHITNTKEGYNPGKPEPLNPKVKVNKQIDYLG DGVENKDTNVQRDQRYKNHLEDIYRLYLDVEGTRVKKQEAVDLLFVLDGSSSMGTKDMSW NGEAISRKDAMIGMINNTDLVENFLKQNDQNRVAFLYFEGYAGNENTKREDGYTYHEDAQ IIKNWSHSFDRNIDFDFKARYMGTNYQAGLMMAEELLRKSEEQKGRRQVMIFISDGVPTF WIDSDGNRREDGRNSSTTVSNSKFYTEEFLDGFYSRHPNLITHAVGVSEDIDEENILESK SPEVLKYMANKGKGSYIGVKSNTGELVSKLKYAIEAAVTEVRIEDTLSDRVELLADKADF KVVKINKDTGEETILWENGHETWQNGYGSNKHINSLVYDEFNKKVVLTFNPNYKLEENTK YVLSYNIKTNQQAKDDFLNNGYDAEGDRDTDYEGNNTSSEKEGFYANKIAEVYYNGGKKV YPHPVVQVKKLPSYELPTTGGTGTKLIKTVGAVVFVIAAFSLIRKKRND >gi|281297454|gb|ADDO01000052.1| GENE 11 17516 - 18100 757 194 aa, chain + ## HITS:1 COG:no KEGG:bpr_I0898 NR:ns ## KEGG: bpr_I0898 # Name: not_defined # Def: sortase # Organism: B.proteoclasticus # Pathway: not_defined # 6 191 8 186 212 138 34.0 1e-31 MIRRNIYFYFGGTCILIALIFLTHNVTEDYKVNESTKKIVSELKESVENDSNQQNRYIDN PKMEMPIKQINGYDYIGYLRIEKLSLDLPIMSEWSYPLIRISPARFKGSIYENNMIILAH NYKAHFGYLYKLDRGDMVEFVDMDNNHFIYKVEEVEKINGDKMEELLSGVWDLTLFTCTL GGKSRVVVRCKIQK >gi|281297454|gb|ADDO01000052.1| GENE 12 19145 - 20230 1270 361 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282882674|ref|ZP_06291284.1| ## NR: gi|282882674|ref|ZP_06291284.1| conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] # 1 361 1 361 361 445 100.0 1e-123 MRTFTLLIIFAVILCIIAFIIIKNILAKNESLAHDQNLIEWEKLRNSKNNTDDENLISED NKNPTIENTSNEGDFSDSKYLVDKDKAKTPSKPSEKSNDSNVNKSKTIECGLNIDDKKNK EVKEDYLNQNEEANDLVKKRIKYQSKETTNKDLENKNFESPDSKNKEEFENVDLEKTEIK AQEQAKEENNDKKISTQEKVKAVNTHIKEVDDFINNIEDIDSLKKSSPKLCQKENYDSKL DFHKSITTGGMDEFEKTEIQVKPGDYNLFDVVEFIKNTKTLPTKISKKKLLTLQYSSTNK EDIRKILSNNKIIDEKGLNALNENSSVNSTILIDKENNKITEVTDSINYSDSKRTIFSKF Y >gi|281297454|gb|ADDO01000052.1| GENE 13 20495 - 22096 461 533 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803542|ref|ZP_02197411.1| 30S ribosomal protein S20 [Vibrio campbellii AND4] # 10 517 4 517 520 182 27 6e-45 MNKKSSNGSKIAKSTLALIIFSLIGKVFGFVRESLTANVFGATVEMSAYSLAQAATAMIS AFVTSAIATTFIPALQRAENDLGEERKNYFTNNLLSISSVVSIILILLGWFFPRQIAYLT ASRANPETFKIVVRLIQLGMPVVIFSCWVGVFTGYLQYGGKFAATGAISIPLNIVYIVYL AMFSHHVGIVGLTVAAVVGAFAQFLFLLPDSFKLGYRPKLIFDLKDKYVKEALELSLPVL VSVSVNDINTAVNRSLASGMGTKAPSILYFSNKMNTLIIGIFIAAVTAIVYPILTRSFGR GNMLQGKKVMNASIKSVLFLTVPATIGMIILARPLIEIAFVHGKFTVEDGISATSTLRFY SLSLISISLTNVLNRIYYSLNDTKTPFVIGALNVIINVGLNLLVAHHYGTDGLAASVSIA TTAAVFIGFYLLRKKIGNLGTKSYIKAIIKTVMASVAMGLVALTYFPIEKILFSFSSGAL LTLLRLTVLLIVVSIAAIIYLVILYYLGVREIRDLVAILKEKIQNRYLKSPNK >gi|281297454|gb|ADDO01000052.1| GENE 14 22554 - 23327 1133 257 aa, chain + ## HITS:1 COG:FN0439 KEGG:ns NR:ns ## COG: FN0439 COG1540 # Protein_GI_number: 19703777 # Func_class: R General function prediction only # Function: Uncharacterized proteins, homologs of lactam utilization protein B # Organism: Fusobacterium nucleatum # 1 257 1 257 257 368 66.0 1e-102 MEYYVDLNSDIGESFGSYKMGMDEEVIKYVTSINCACGYHAGDPLIMDKTVEMAHEKGVR VGAHPGYPDLLGFGRRKIAISAEEARCYMLYQVGAISAFLQAHGEKLQHMKLHGAFYNTA CNDEKLANAILDAVEEYDKNLILMVLSGSLIAREGQKRGLRVCQEVFADRGYNEDGTLVN RKLPGAFVKDPKEAIPRVIKMIKENKVKTADGKEIEIVADSICVHGDNPKAIEFVKSIRQ GLLDEGIKVQAVDTFLK >gi|281297454|gb|ADDO01000052.1| GENE 15 23350 - 24600 1475 416 aa, chain + ## HITS:1 COG:FN0438 KEGG:ns NR:ns ## COG: FN0438 COG1914 # Protein_GI_number: 19703776 # Func_class: P Inorganic ion transport and metabolism # Function: Mn2+ and Fe2+ transporters of the NRAMP family # Organism: Fusobacterium nucleatum # 1 392 1 388 395 404 65.0 1e-112 MKKENKLSVLLGAAFLMATSAIGPGFMTQTATFTQKHGAAFACVILISIIASYITQLNVW RVIAVSKKRGQDIANEVLPGLGYVIAFLVALGGFAFNIGNVGGAGLGLQTIFGIDTRIGA AIGAALGIFIFTSKSAGKAMDKLTQILGAIMIVLIAVVAVKTKPPVGFAFKSALAPEGGY LNLIPATLTLIGGTVGGYIVFSGGHRLIDAGISGEENLKDVNQSATLGIAVALIVRILLF LAILGVMGMAGAQIDPENIAASSFKSAAGVFGEKVFGVVFSAAALTSVVGCAYTSVSFLR TLFKFIDKNSNLVTILFIVVSTIVYIFIGQPQTLLVVVGTLNGFILPITLAVILVAAKNK KIIGTYKHNNVLYILGWIVVIITAYMGIKTASGSIGKLLGTDSAMIVTNVIKSILV >gi|281297454|gb|ADDO01000052.1| GENE 16 24612 - 25358 962 248 aa, chain + ## HITS:1 COG:FN0437 KEGG:ns NR:ns ## COG: FN0437 COG2049 # Protein_GI_number: 19703775 # Func_class: E Amino acid transport and metabolism # Function: Allophanate hydrolase subunit 1 # Organism: Fusobacterium nucleatum # 1 247 14 261 262 277 56.0 2e-74 MDEKVKFLTAGDRALVMEFGNEIDKEINSKISTVVNYLKNNKFKGIIDILPTYRSILINY DPQIIKYKELVKYLNEIKTDEKEKENTSVRLVEIPTLYGGDYGPDIEFVAKNANLSVDDV IKIHSGTDYLVYMMGFLPGFTYLGGLDKRIATPRLKSPRLKIEAGSVGIASNQTGMYPVE SPGGWQLIGRTPLKLYDQSKNPPVFIQAGDYIRYIPINEKEYEKIKTQVENNEYKVLIKN VKRGELHD >gi|281297454|gb|ADDO01000052.1| GENE 17 25351 - 26295 1278 314 aa, chain + ## HITS:1 COG:FN0436 KEGG:ns NR:ns ## COG: FN0436 COG1984 # Protein_GI_number: 19703774 # Func_class: E Amino acid transport and metabolism # Function: Allophanate hydrolase subunit 2 # Organism: Fusobacterium nucleatum # 1 314 1 309 336 311 53.0 1e-84 MTNIRVISPGILTTVQDRGRYGYQELGVPVSGAMDDLSFRLANILVGNDQNEAELELTYS GPSLQFDADTVVAITGADMSPKLEGKVAPMYESFLVKKDQTLSFGKLKSGIRAYIAFGGS IDVALVNGSKSTQTKIKMGGFQGRPLKAKDILKVKVNPSATCGKVLKEKYRPKNSKFAVI RAVLGPQDDYFTQKGIHDLFVSGGYMISKEFDRMGIRLKGSKIEHKETADIISDGTVFGS IQVPANGEPIILMADRQTTGGYTKIATVISADLPKLAQMQFLDKIIFQEVGIEEAQEITC KYEENFKNIIEDLK >gi|281297454|gb|ADDO01000052.1| GENE 18 26489 - 27781 1578 430 aa, chain + ## HITS:1 COG:CAC0463 KEGG:ns NR:ns ## COG: CAC0463 COG0265 # Protein_GI_number: 15893754 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain # Organism: Clostridium acetobutylicum # 51 370 37 338 348 194 37.0 3e-49 MEDRNITESNKSTRGKKSGNGLIILALIFAIIGGVIGSAFTSYCFYKKFPANSENSSKNI TINASDVSTVASAVAKKSMPSVVGITTTGVQPSFFGPVQVQGMGSGIVFDDKGYIVTNAH VVKLNNQVVDKVNVQLDKDVTVEGKPIWVDENVDLAVVKVNTKEKLVPAELGDSDKLNIG DVAIAIGNPISLQFSQTVTQGIISGLNRYVGQVSGGGYMMGLIQTDASINGGNSGGALLN AQGQVIGINTVKVQSAEGLGFAIPINYVKTIINQVVKNGDYKELSLGVYSADAQYANQII GKDLGIDEGIFILKVFDNSPAKTAGLEVGDVITKLGDDKIKGVKDLKAALYKYQEGDKVT ITYIREGKEKQTELTFTNYRVPVSEKPKEDKKTQENFENRQDQGQNSQGNYDESDPFNQY REYMRSFFGE >gi|281297454|gb|ADDO01000052.1| GENE 19 28146 - 29048 872 300 aa, chain + ## HITS:1 COG:FN1038 KEGG:ns NR:ns ## COG: FN1038 COG0697 # Protein_GI_number: 19704373 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Fusobacterium nucleatum # 9 289 11 290 303 162 38.0 9e-40 MSRELKSTIMLLTAAIIWGFAYVAQVSGMSHVGPLTFNFARFLVGGVFLIIIYNIFKRTI PYYKNEIYSLNKTIKYGVICGLLLTVGNNLQQLSLLGTSAGKVGFLTSTYIVIIPLIQFF FGKRISNRIIFCIFIAMCGVYLLSVKENLSINSYDILVLVSVLFFAIHIMIMATCPDDCE KILVSMIQFFVTSILSIILAFLFEDIVIINLFKAYKEILFVGIISSGIAYTLQMLAFKDI DPTIGSLVASLESVFSVIGAWIFLNQRMNLREISGCVIILIATVVAQLPSKGKRKGLSKG >gi|281297454|gb|ADDO01000052.1| GENE 20 29152 - 30036 778 294 aa, chain + ## HITS:1 COG:CAC0076 KEGG:ns NR:ns ## COG: CAC0076 COG0697 # Protein_GI_number: 15893372 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Clostridium acetobutylicum # 2 292 3 291 303 169 36.0 6e-42 MSREFKSVIMLLISAIIWGFSYVAQALGLQEVGPFTFNTARSFVACIFLWLTYLFFKKTS NYYKNEVFSLKSTIIFGSVCGLLMTVATNFQQMGIIGTTTGKAGFLTATYIVLIPIFDFF LGKKIKPRIILCVFFAMVGTYLLSVKENFTVNGYDLLVLFSAIFFALHIMVMTKLPNDCQ AILASLTQFFVVMLASLVIAIFKEEIVLASLKAAIPAILFVGVLSSGVGFTLQMIAIKDI DPTIGSLVSSLESVFAAVGGWMILGQKMNLREITGCIIILVVTIIAQLPSKKKV >gi|281297454|gb|ADDO01000052.1| GENE 21 30131 - 30760 815 209 aa, chain + ## HITS:1 COG:no KEGG:Palpr_0844 NR:ns ## KEGG: Palpr_0844 # Name: not_defined # Def: hypothetical protein # Organism: P.propionicigenes # Pathway: not_defined # 15 208 235 430 434 144 37.0 3e-33 MSLIDKIFSNKSKRIITIDGEYGSGAYNIAANIAEKENIKFYDSKLIELMTLEKEVKPED LSKDDSFLQGTIYDLYRENYSYSQEDIAFSDAQFLMDSRTIRDIAKKGQCVILGKCADYV LGDDTVLSVFIYASEDFKLNRIEKDYNIKKDKIEAKMNREDMKRKNHYERNTGRLWGKSS VYDLSIDSSAFSFDTIEDIIIKLANKKIR >gi|281297454|gb|ADDO01000052.1| GENE 22 30798 - 31946 1262 382 aa, chain - ## HITS:1 COG:FN1896 KEGG:ns NR:ns ## COG: FN1896 COG1172 # Protein_GI_number: 19705201 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components # Organism: Fusobacterium nucleatum # 39 352 19 324 340 301 51.0 2e-81 MNKNFGKTLRSSMVPILFIVICGIGIIIAKPPIASVTSELATRLVRNTFLVLSLLIPIMA GMGINFGIPLGAMSGQIGLIFAQDWGFTGATGLLVAALIGTPISILLGQFSGMVLNKAKG REMITSMMLSFFILGWYMLFLLFFCGTIIPIRTKELLLSEGFGIKNSLTLASRGALDNIL KFRINLPVGQSQAIRFDVPIMTLVVIGILCVFVVWFKRTKLGHDMKAVGQDQIVSTNAGM YSNKIRVQSIIISTVLACYGQIIYLQNIGTLSTYGGQDQAALYAAASLLVGGASVSKASI PNAILGTALFHLMFIVMPQAGKVIAGDAMIGEYFRTFLSYAVVTIALIMHAYERAKASEE KRLETRQQREKATAQASEKINK >gi|281297454|gb|ADDO01000052.1| GENE 23 31939 - 33015 1138 358 aa, chain - ## HITS:1 COG:FN1897 KEGG:ns NR:ns ## COG: FN1897 COG1172 # Protein_GI_number: 19705202 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components # Organism: Fusobacterium nucleatum # 6 353 1 333 339 315 51.0 8e-86 MKNKNLLQKFGLARTIIALFLIALFIAAPFAGVSIKDSFENVLSRFGMFSILVLSLVPMV QSGCGLNFGIPIGVVCGILGGVTSIEFGYVGYMGLFMAMVFAILFSIFFGAIYGYVLNKI MGDEMLIATYVGYSFTSFMCIAYLLLPYKNPVSVLSYGGTGLRQQIPVANYWMKQVIGNS GNKMTMGLISKFLSFNIGGVHVPIGMFLLFAFFAFLVWSFFKTKTGTAMTAVGSNPEYAK ASGINISRVRFVSVILSTAIASVGIIVYQQSYGFIQLYQAPLAFTFQTVAALLIGGASIN KATIPHVIIGTFLFQGIITLTPTVINGAFNIDISEILRIIVTNGMILYALTRRNKVNE >gi|281297454|gb|ADDO01000052.1| GENE 24 33005 - 34606 206 533 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 292 512 36 247 329 84 27 2e-15 MTENLLEVQNVSKSFGENQVLKDVNFTLKEGEILGLVGENGAGKSTLMNIIFGMELIHET GGFNGKLIFDGKETSFKNPIEALNAGVGMVHQEFNLIPGFTVAENITLNMENTKKSVVSS VFGKKLETIDGKKNIEISGSSLEKLGISIDANELVSEMPVGHKQFIEIAREITRKNVKLI IMDEPTAVLTESEANSLMESLKRLSSLGIAIIFISHRLREILTICDKVVVLRDGVVVENR PNKDLSIEEIANWMVGRSSDDKMDVVKKNKKDIDGKDTIMNINNLWVDMPGEAVFDVSLS IKDGEILGIAGLAGQGKLGIPNGILGTYPVGGEVTFKGEKLKLGNTSKILKKGIAFVSED RRGVGLLLDEPIYWNIAFNSMQVQDKYIKKILGLKFRDENAMKELAKNYIDSLAIKCTGP EQKAGNLSGGNQQKICLAKAFAMNPELLFVSEPTRGIDIGAKQLVLEALEKFNNENNTTI VMVSSELEELRSICDRIAVICEGKIAGILPADASPEKFGLLMSGESVEVKGEK >gi|281297454|gb|ADDO01000052.1| GENE 25 34668 - 36008 1741 446 aa, chain - ## HITS:1 COG:no KEGG:Taci_0120 NR:ns ## KEGG: Taci_0120 # Name: not_defined # Def: hypothetical protein # Organism: T.acidaminovorans # Pathway: not_defined # 63 424 28 393 397 421 53.0 1e-116 MKKKFVRFLTVLLLMVLGLSMGACSKVENTSSSNGKDAEAKETEEIKDLPKADYKVLKEG EPYHIGVVTGTVSQAEDEFRAAQAAIEEFGADVVKNDTYPDRFEAEIETTIQKITAMADD PDMKAIIVNQSVPGTSAAFQKIREKRPDIILVNLTPQEDVIMVEKASDLCIDVDNISRGY RIVKAAKEVGATKFAHITFPRHMSIEMLALRRAIFEEACKDEGLEFISLNAPDPTTDIGI PGAQQYVAENIQSWIDKYGKDTCFFCTNDAHTEPLLRGVAQGGAIFIEPDLPSPIMGYPN AFSVDLSDIAGNWQAINKRVEEAVVKAGGGGRMGSWAYSLGYTEVRGAVDHVIKVLHGQA ELTNAEDIKASLHKYTEGANWMASKFVDRQNGQEVDNHVLISQDTYLYGKGYMGMDKVQV PDKYKNLNVDLEAIKKSQEQAEGQAE >gi|281297454|gb|ADDO01000052.1| GENE 26 36409 - 36576 280 55 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282882643|ref|ZP_06291253.1| ## NR: gi|282882643|ref|ZP_06291253.1| conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] # 1 55 1 55 55 80 100.0 3e-14 MDKNLCKIKKNASKKLDDITHFSIFEKIAIFISLAALIIKVFDLVDGVLDLINRN >gi|281297454|gb|ADDO01000052.1| GENE 27 36588 - 37376 971 262 aa, chain - ## HITS:1 COG:TM0785 KEGG:ns NR:ns ## COG: TM0785 COG1659 # Protein_GI_number: 15643548 # Func_class: S Function unknown # Function: Uncharacterized protein, linocin/CFP29 homolog # Organism: Thermotoga maritima # 1 252 4 257 262 176 36.0 6e-44 MDILKRSFAPITKNTWNEIDSAAREAIIPMLSARRVLDVKGPKGFKYSGIQDGRLEIISQ KNDKVQAGIRKVVPLVELRIPLELLKWTLDDVERGAKDVNIDPLEEAARNIALAEEEIIY NGNKSAKITGLVQSAGHKLKIGSDANEILKSIGQAIYKLYESSADAPYDLIVSKEIYEKI NIIYQGASLIKVISKLIGGSIIRSKVLKGALLIPHKNEDFEFVLGSDFAVGYEGDCGESV RIFITESFTFRVLNADKIVYFS >gi|281297454|gb|ADDO01000052.1| GENE 28 37390 - 37743 562 117 aa, chain - ## HITS:1 COG:TM0786 KEGG:ns NR:ns ## COG: TM0786 COG3461 # Protein_GI_number: 15643549 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Thermotoga maritima # 1 117 1 114 114 120 58.0 5e-28 MANDYHEPTSEMSQKDRDIVRAIVSLKEEIDAVDCYHQRVATSSNEELNRLLLHNQHEEM EHAIMLLEWLRRNQDGWDEQMRTYLFTNKDLTKVEEDAESGESSKASSDEDLGIGEL >gi|281297454|gb|ADDO01000052.1| GENE 29 37924 - 38088 414 54 aa, chain - ## HITS:1 COG:TM0659 KEGG:ns NR:ns ## COG: TM0659 COG1773 # Protein_GI_number: 15643424 # Func_class: C Energy production and conversion # Function: Rubredoxin # Organism: Thermotoga maritima # 1 53 1 53 53 77 79.0 6e-15 MKKYECTMCGYIYDPEVGDEDGGIEPGVAFEDLPEDWVCPLCGAEKSDFEPVEE >gi|281297454|gb|ADDO01000052.1| GENE 30 38299 - 38700 484 133 aa, chain + ## HITS:1 COG:no KEGG:FMG_1043 NR:ns ## KEGG: FMG_1043 # Name: not_defined # Def: hypothetical protein # Organism: F.magna # Pathway: not_defined # 7 129 1 123 130 70 36.0 3e-11 MNNMNVIYKFDDSVTSDLLSIEPFVKGAVSELEGFIDDRDAIFDIKLILNELVVNGAMHG NCKDCSKKVRLKMVMDEKSLMIIVKDEGEGINYESLRDDCKSWDFNGRGLFIVEALTDEL ILHDNEVIAIKNL >gi|281297454|gb|ADDO01000052.1| GENE 31 38755 - 40062 1070 435 aa, chain - ## HITS:1 COG:FN0978 KEGG:ns NR:ns ## COG: FN0978 COG1757 # Protein_GI_number: 19704313 # Func_class: C Energy production and conversion # Function: Na+/H+ antiporter # Organism: Fusobacterium nucleatum # 10 432 6 430 431 239 42.0 7e-63 MGENMLENFVLLLFIVVLIGSIVLKISLVLALLANLIIFIIYCLIKGHKLKESLNFVYQG FSTCKLMLFIFLLIGMITGTWRACGTISYIIYNAVKIISPKYFYVGIFLFNATVSLLTGS SFGTSSTAGIISMTLSYAINMNPYFSAGAIISGCFVGDRTSPMSTSALLIATITQTDFYN NIKNMIKTSIIPIVLTIITFQILNLNSLGAIHNVDLTSIKSDFNFNIILAIPAILIIILA MFKVPLKYNMSLSIIIAIFLAYFFQNMSLNQILRSALLGYVNENADKSINGGGVISMAKA ILIVGISSGYFGIFKNTDLLKSIKLTVNSIYKKFPQLFVMEILSIIIACFSSNQTLSIML TYEMSRENIEDKEKLALNLSNSALLNSMFIPWNISGRIPIDTISAPIGGIYFSFYNIYMI LVNTLADIWANKKHH >gi|281297454|gb|ADDO01000052.1| GENE 32 40282 - 42189 2518 635 aa, chain + ## HITS:1 COG:Cgl2939 KEGG:ns NR:ns ## COG: Cgl2939 COG0845 # Protein_GI_number: 19554189 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-fusion protein # Organism: Corynebacterium glutamicum # 352 607 302 567 612 66 25.0 2e-10 MASMVKGMFLKKKGTEISSNQVITLKKGDVVNSINENGKVVSSTSTDIFAEKESPVSSIN VKVGDEVKEGDIIATLDSSAIDEEIAKKKASARANNKTVGAGIAAAKKRLDEAVENRSNG TNAGIVAAKASVEQSLDAYKSAQKTYEDYKNSLEKQYNPEIVGEKNSRENLAYGEKSSQL KYNQLINDFSDNKKKSSDNRVLAEDCNSRIDAIQSRIDDLTRKSTDIGIRISDVQNEISD IGSKGQSYKEQGSDVNKNEAKKLEDDIKSKRQELNSLTRYQEEIKIELSKLSDELANAKS QKEKYTSEADALDKEIDSQRKNLDQMSIDIEKAHDDLKSDADKSIKASQARDDQLKTYKL AMDTAENSYKAALVSLKSAQTSADNEISMLRDALNSANANSNNLDEVELKYLNEELEKTK IRALKDGTITKIDAKEGEVPKSAIARIETVNKLKIESLIKEYNVKDVKIGTKVIITSDAL GDEEFEGKVSFINPTPEDLDPNSQSKDVNYKTEIEISKEDSEKLSPGMTLRVKYILSEEE DTYHVPTTAIFNRDGKDYVLALKKDGNNTYKIANVEVKKGLENDFETAIKGKDLKRDMKL LSNTQGYGEGQIINISEKAENEEENKENLENKNGE >gi|281297454|gb|ADDO01000052.1| GENE 33 42191 - 42871 305 226 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 7 206 1 201 223 122 34 7e-27 MTKLIEMKEIKKSFNIGKENELEILHGINLQVNAGEFVSIVGQSGSGKSTLMNIIGLLDR QTTGLYSLNGVDIKSLNDVELSSYRSKKIGFVFQNFNLIPRSNALKNVELPMLYAKVSRK EREERAKILLEAVDMKERMSHAPSELSGGQKQRVAIARAMANDPDIILADEPTGALDSET GRQVMDLFHKLNEEEKRTIVVITHNLELAEEADRIYRMKDGMLEEA >gi|281297454|gb|ADDO01000052.1| GENE 34 42871 - 44124 329 417 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163788031|ref|ZP_02182477.1| 50S ribosomal protein L9 [Flavobacteriales bacterium ALC-1] # 5 417 7 413 413 131 26 1e-29 MDFFETLRLSLEGLRANKMRSFLTMLGIIIGIGSVIGITTIGHAMTKSVNKAFDSIGNTA VQISTEPNEPKYSWEEMRYEDGLTVDMLKDLKENLSDIVKDYSLYGAGGSGKINQGDKSI NVDINSTTSGSQYIQKIDMIGGRFLTDEDNTRSKYVAVISDKVVDKIFNGDIQSALGSEI KVKKADKLLVLTVVGVYKWEKIEVGVLGGSGDTSKIYIPYNVGEREINGWVSDYFSYAAF VLKNSDNVEEDCQSVSTYLKNKYFSKNDRVKIDTNSALSQMKQMTSTMDSLQIAISAIAA ISLLVGGIGVMNILLVSVTERTREIGIRKALGATRNDIRFQFITESVIICIVGGIFGIFL GGALGILGSSLLKMRSLPSITSVVVAVGFSMLIGIFFGYYPANKAAKLDPIEALRYE >gi|281297454|gb|ADDO01000052.1| GENE 35 44305 - 45030 565 241 aa, chain + ## HITS:1 COG:FN1561 KEGG:ns NR:ns ## COG: FN1561 COG1496 # Protein_GI_number: 19704893 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Fusobacterium nucleatum # 22 240 29 241 242 100 33.0 3e-21 MNSDFLEKNGVINYISGKEMSFRTQKEGNKVKSYAQDIIKKLKINPYEIYSCRQMHTDNI CYASGENGDDYFYGKYFDNTDALITDKKNIGLLIKFADCTPVVLYDKSKKVLSIIHSGWR GTSKKIVEKTLIKMEKDFSCQRESIIGFIGPTIDQENYEVGEEVYDAFKSFKNRDRFFKY RNEKFYLSLISANLDLLTEQGLIRENIKISQKSTFLTESLHSARRDKENYGLNSMFVMMK K >gi|281297454|gb|ADDO01000052.1| GENE 36 45194 - 46942 250 582 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 336 553 279 502 563 100 32 2e-20 MKLYRKLFAYMPEKKIQGILAVLFTLIGTCMLFFAYYLIWTLLRDVFIGTIISDAKKRAV VILILFICHGLIYFLGLWMSHLAGFRLETRLREKGIKNLLKASQSFYDTHKSGEVRKIID NNVEQTHMIVAHLIPDQTAALITPIFMAILAFYLDISLGIFFLVIVGLSFFLFTKMMGNM EFMDAYMKKGDELNAGAVEYVRGMPVVKIFNAPIVGFRSLYENIIGYRDMVYAYSMSCRI SYVSFQWLLNIFIVLPIFLAVFKVAGGADPRLWSIKVLFFTLFMGIFFSNMMKIMYVFMY IYQANSAVDNLENLFTEMEEKTIDFGSLKEMKNHCIEFKNVDFSYDKNTKILSDFSLKLE ENKVYALVGASGSGKSTIGKLISGLYPVDKGQILIGGEKIKNYDKNFLMDNIGIVFQNPK LFADISIYENVKLAKKDASKAQVIEALKLARCNEFIGKFKDGYDAVIGSEGINLSGGEIQ RISIARVFLKNPKIIILDEASAAADPENEYELQRAFKDLIKNRTVIMIAHRLSSIRGVDE ILVVEDGRVIERGSHEKLMKVCESYKKYVNLYESANEWRVNE >gi|281297454|gb|ADDO01000052.1| GENE 37 46939 - 48660 229 573 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 302 551 247 507 563 92 26 5e-18 MKNYLKNRYALTDKGAKGTVVAIIYSTLKSLSFMMPIILLMYVLNGLLGFGNFDIKIAGI LFIAIGIFMAFVINKDYITTYNETYKESANLRIEIAQIIKNLPLSFYSRTDLTDLSQTIM KDVEAVEHSLSHAVPGFFGFIFNFIIIGAMLLIGNIKLGLAIIIPVLLSMVFNFLSKKIQ VSATKKYYIEKRKSSKIFQELIDLSTEIKSYNLTKDKGDYATDFVKKLEKGHILTELGQV IPVSIADVVANLSLGLVILIGLIELNKGNINILYFAAYLFAAARMIDGVAAFNQYYAELM YIDGPIEKIKALRTEKVQEGEKEEFNSFDILGEDVEFSYLEDKKIIDGISFKALQGKTTA LVGPSGCGKTTVLRLVSRLYDIDRGKISIDNKDINRSRTQDLFKHISMVFQDVVLFDGSV MENIRIGNMDASDEEVIEAARLANCQEFVDKLPKAYDTNIGENGSKLSGGERQRISIARA FLKNAEIILLDEIAASLDVQNEKYIQESLNKLTKDKTVMIISHRPRSIEKVDQIIVMNDG KIEAAGSHDELLKKSKTYKKMIEYSKKSEEFVY >gi|281297454|gb|ADDO01000052.1| GENE 38 48671 - 49264 621 197 aa, chain + ## HITS:1 COG:no KEGG:SGGBAA2069_c10680 NR:ns ## KEGG: SGGBAA2069_c10680 # Name: not_defined # Def: hypothetical protein # Organism: S.gallolyticus_gallolyticus # Pathway: not_defined # 2 190 3 191 195 204 54.0 2e-51 MKNKFGIRDLVNAGVFSLLTLMATWCGGMIGFIPVLMPLVPFFCGLLSGPVFMLYSTKIN KFGMMLIMGVIFGLAFSMSGHGAITFPLIIIFSLLAEYVLKKGNYKSKKYARLSYVVFML FGASNLLPIFLARDAYIKSMISKGYGVEYTEKFMSVMPTWSFLPIVILGMIGGYIGCTIG IKILNKHFKKQEWIDEN >gi|281297454|gb|ADDO01000052.1| GENE 39 49254 - 49949 394 231 aa, chain + ## HITS:1 COG:SP1437 KEGG:ns NR:ns ## COG: SP1437 COG0619 # Protein_GI_number: 15901289 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, permease component CbiQ and related transporters # Organism: Streptococcus pneumoniae TIGR4 # 87 222 7 139 147 75 39.0 9e-14 MKIDFRVKLLLTIVIGIVAIEGSIGQRYQFLGFLVAIFPYILAVFDKKFSFVFKGLFYSL LAISIQKYSLIIGEKFFAMILNLYGGIVIRILPGVMMGYYTMTTTSMSDLVYSLQKMKMP DVIIIPISVMFRFFYSIKEDYKKINEAMYMHGITFKNFFKNPMKYLEYKFVPLLMITSQS ADNVAISAMTRAMKLSCPRTSISNQKFKIYDYILFIFAIILIFLFVRVKLC >gi|281297454|gb|ADDO01000052.1| GENE 40 49943 - 51358 1078 471 aa, chain + ## HITS:1 COG:SPy1787 KEGG:ns NR:ns ## COG: SPy1787 COG1122 # Protein_GI_number: 15675626 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, ATPase component # Organism: Streptococcus pyogenes M1 GAS # 36 454 33 452 464 219 33.0 7e-57 MLEFKNFSLEYTNSLNIKEKIFENINVSFKKASINVITGQSGSGKSTLLKTINGIIPEIT GAKLSGELVYNGKNLFEEDITQRSGIISTVFQNPKNQFFAVNSLDEIAFALENRNIPREE IFERIKHYTEILSTKRLLDRDLLKLSGGEKQLVAISSVAVMDNDIYIFDEPSASVDNNSI EKLARVLQILKDMGKIIIIAEHRLYYLKNILDKLLIIKNKSLISYDKDEINQELINRHNL RSLDKIEKSELKNDNFIQKNLHDKSYNKYDKLICKNFYCKYRDKDKEIFDFSISFNEGIY FIIGENGIGKTSFIRNMCGLNKKQKGELYYNNEKVKNPNSLISLVMQDVNYQIFTESLLS EISIVTDDNSLKEETLKKFGLWEKKDFHPQSLSGGEKQRLMLALAYASPKEIVILDEPTS GLCHKSMINLIKILKKMKEQNKIIIIITHDYEFIKMAGGNVVEFVDEKKRN >gi|281297454|gb|ADDO01000052.1| GENE 41 51339 - 52262 851 307 aa, chain + ## HITS:1 COG:STM1355 KEGG:ns NR:ns ## COG: STM1355 COG2207 # Protein_GI_number: 16764706 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Salmonella typhimurium LT2 # 178 304 156 280 296 73 34.0 4e-13 MKRKGIESWGFKILTTEDADILYFKHLDFEDNRITCYRLFPGVYIMFIDFKHKYNAKDSE YDGRYGYRIGYSYEGNYYTYINKNKVLITREIFVGKSIPKSKESYSTSDRTIAFNISIVP KELEKDFYYYTFIKEFIRIVEGTKDIGYIISDEKIIYRANELIEILKNKDKKLIGLKTLE LIYLISKKKLSDNRKKYYKKDLQDDINKIEEYLRLNISEKIDLDFLSKNFKISKTNLNNK FIRKFQYTPMKYLNNLRMIEAEKLLVDLEKEITDISQDVGFSNPSNFSRSFKKFTGLSPS EYRKNNI >gi|281297454|gb|ADDO01000052.1| GENE 42 52484 - 55186 2763 900 aa, chain + ## HITS:1 COG:SP1551 KEGG:ns NR:ns ## COG: SP1551 COG0474 # Protein_GI_number: 15901394 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Streptococcus pneumoniae TIGR4 # 6 898 26 906 914 698 45.0 0 MDNINWYELSKDESFEKLSSSTLGLKEDEARKRLEKYGPNALKKEEKKPLIEKLKDQFFD PMIIILIVAAIFSAFSGEKLDSFIIVAIVIVNAFLSIYQEGKAEEAIASLQKMSTPKAKV LRDGKEIQIDSEKIVPGDIVILETGDIIPADLRLIESNNLKVDESSLTGESVPVDKDSEK VFNDYTELGDRVNLCFSSTIVSYGRAKGMVIGTGYDTEIGNIASSITSLDREETPLQKKL AGLSKSLGILVIGICIIVLVVGLLYKHELKEMFLTSISLAVAAVPEGLPAIVTIVLSIGM GKMAQKNAIVKKLLAVETLGTTTVICSDKTGTLTQNEMTVRKVFVDDKIFDVSGTGYMPK GEISHKGEKISLSDEENLYILSSIASLTNDARLNYDNNKVDFIGDPTEVALLTFTEKIGN SIEKLKEDFPRIAEIPFDSDRKMMTTFHENFFEGKVSSFTKGAADIVLSKCHKIFLNGEI QDLTDEMREEILTKNKSFAKEALRVLSYAFRNYNEMPKDLTSQSIEKDMIFVGLSGMIDP ARPEVKDSINKCKSAGISTFMITGDYLETGLAIAKELGIADSEDQAVSGKDLKGLSDEEF RKLVKEKRVYTRVSPENKVQIVKALKENGQIVAMTGDGVNDAPAIKKADIGIAMGITGTD VAKNTAEVILTDDNFATIVNAVEEGRIIYSNIKKFVGYLLSCNIGEVLIVFISIILNLPV PLIPIQLLWLNLVTDSFPALALGVEKGEEDIMDKPPREVDESIVDRNLKITVAIQAIAIT CGTLVSYIVGLNWFGTSGHGLEMARSMAFTTLILSELLRSYSARSVDKTIFQIGIFSNKN LFMATLFSFLLMIAVIYIPFLSSAFKLVDLDLREWAVVLISAFFPLVIGEVQKVLRFKSK >gi|281297454|gb|ADDO01000052.1| GENE 43 55294 - 56334 1045 346 aa, chain - ## HITS:1 COG:RSc1298 KEGG:ns NR:ns ## COG: RSc1298 COG1024 # Protein_GI_number: 17546017 # Func_class: I Lipid transport and metabolism # Function: Enoyl-CoA hydratase/carnithine racemase # Organism: Ralstonia solanacearum # 2 334 24 351 376 151 29.0 2e-36 MIIKEIKDNVGIITLNREDKINALNYEMFIDIEETLKEWENLSDVKVILFDGAGQRGFCS GGDLKEFYEAFLTNPSCLNKHEFFSKEVLLDKYIMSYKKPIISHWFGIVMGGGVGLSIHS DIIITDETTKWAMPETKLGFVPDVSVGKNISTLPQALGQYVGLTGAILEASDLMRYNFSH IFCRSDNYQKLIRELFKVAKENPQDKIIEKFKEASKNYNLPIRNTYISQNMDKIEKYFSK NSVKEIYYDLKDNFDDSFAYKNYHNLKIRSPLMLNVQFEKYFMCKNLSAEQTIDLDLHIL NYATDNGDVAEGIRATMIDKDENPNWSVKTLEDVDMKIVMNILNEK >gi|281297454|gb|ADDO01000052.1| GENE 44 56445 - 56816 477 123 aa, chain + ## HITS:1 COG:BH0651 KEGG:ns NR:ns ## COG: BH0651 COG1725 # Protein_GI_number: 15613214 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus halodurans # 1 106 1 106 123 91 50.0 3e-19 MNIIISGKSEKPIYEQIKYQIKKAIILGQLKKDSPLPGLRSLASDLKVSVITTKRAYSEL ENEGLIYTVAGKGSFVSSIDKEIFYEEGIEKIEEKFKDIIIISQDLKMSKKDLFDILENL YKI >gi|281297454|gb|ADDO01000052.1| GENE 45 56825 - 57664 879 279 aa, chain + ## HITS:1 COG:BH0652 KEGG:ns NR:ns ## COG: BH0652 COG1131 # Protein_GI_number: 15613215 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Bacillus halodurans # 4 278 5 284 288 182 37.0 5e-46 MKTIEIKNLEKSYGDFHLTIDNFSMESGTVMGLIGENGAGKTTLIKSILDLVKYKGDIKV FGNYMSKEIKEDIGVVFNEGFFTENLKIKEIEKIMASLYKKWDKDYFYKLIGEFRIPKDK KYNELSTGNKMKLKIINALSSHPKLLILDEPTSGLDPVIRDEILDIFFEFIKDENSSILF STHITSDLEKIADYISFISQGKLVFSKNKDDLIYDYGILKTDSKSLSNYDNKYFLKIKEE KYNTDVLIKNKKEFSDKYKDAILEKPSIDQIMVFYERGK >gi|281297454|gb|ADDO01000052.1| GENE 46 57664 - 58284 334 206 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282882654|ref|ZP_06291264.1| ## NR: gi|282882654|ref|ZP_06291264.1| NADH dehydrogenase subunit 4l [Peptoniphilus lacrimalis 315-B] NADH dehydrogenase subunit 4l [Peptoniphilus lacrimalis 315-B] # 1 206 1 206 206 243 100.0 7e-63 MKAILKKDFYENFKSTILSIIYILALSISLNLVNSANNKVFLGRFILVYGLVIISLNYCL RDVNNSNYMDYFKYPIKRSDFVNAKYIEFIGIGLIYMGLILLSFIMIKIPAYLTITLFSL LFILSLISFLLPLAFAFANKGKIYPILFLLIIVLCFGLLGFGTIKTFKIYNSININDIKI IIVLISFIFLTISYVASKFIINRKEF >gi|281297454|gb|ADDO01000052.1| GENE 47 58286 - 58885 330 199 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282882687|ref|ZP_06291297.1| ## NR: gi|282882687|ref|ZP_06291297.1| putative heme maturase [Peptoniphilus lacrimalis 315-B] putative heme maturase [Peptoniphilus lacrimalis 315-B] # 1 199 1 199 199 226 100.0 6e-58 MKTLFIKFIYENKIMNIIFAIGILLFIFLTLSFSANFNAYLVVIPLIYYILNTMQFKEKL ISSLLIYPISREAVVNFNFLVNIFLMALSVIFAFNYLLVIGKIEFKSFLIVFVAISLVMA AYSFIIPIKLKYGDNSSITLLIYIFPSIFQIIKNLFGIDLMNYFDFSTIFKIVNFMIFNF IIYIASYTWAKRIIRNKEF >gi|281297454|gb|ADDO01000052.1| GENE 48 58920 - 60209 1713 429 aa, chain - ## HITS:1 COG:PH0710 KEGG:ns NR:ns ## COG: PH0710 COG0172 # Protein_GI_number: 14590588 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Seryl-tRNA synthetase # Organism: Pyrococcus horikoshii # 1 429 6 453 460 315 41.0 1e-85 MLDIKLIRTNPELVKENIKKKFQDEKLKLVDEVIELDKKNREAKNHGDELRAKRNSISKE IGGFMKNGQKDKAESAKLEVAKINKELETLEEEQKKLDEEVRQRMLVIPQIIDETVPIGK DDSENVEIEKFGEPMIPSYEIPYHVDIIETFDGIDLDSSRNTSGAGFYYLKGDIARLHSA ILSYARDFMIDRGFTYYIPPFMIRSDVVTGVMSFAEMENMMYKIEGEDLYLIGTSEHSMI GKFINTITDEDKMPLTMTSYSPCFRKEVGAHGIEERGIYRIHQFEKQEMVVICKPEDSKK WFENLWRNTVDFFRSLEIPVRTLECCSGDLADLKVKSLDVEAFSPRQNKYFEVGSCSNLG DAQARRLNIRLRGKDGIYLAHTLNNTCVAPPRMLIAFLENLLQEDGSIKIPEPLRMYMGG KDKLVPKKK >gi|281297454|gb|ADDO01000052.1| GENE 49 60541 - 61449 1044 302 aa, chain + ## HITS:1 COG:BS_yojN KEGG:ns NR:ns ## COG: BS_yojN COG0714 # Protein_GI_number: 16078999 # Func_class: R General function prediction only # Function: MoxR-like ATPases # Organism: Bacillus subtilis # 51 291 58 303 304 134 35.0 3e-31 MKEFLIRQGVDEKLLNEVDKFIKFYKIDNEIEYRIPNPKYKYYGYLTWNKAIAAILSGNH ILLTGPKATGKNVLAENLAYLFKRPLWTISLNINSDPASLIGADTFRDGQVTLKKGPVYQ AGIYGGFVIFDEINMAKNEALSVVHSALDYRRIIDVPGYDRLNLHEASRFIGTMNYGYVG TRDLNEALVSRFLVIDMPTITREDLYKLMGENTSLKKEYIPIFAQLFLDLQKKSLNSEIS SKSIDLRGLLAAINLMKRGLSINSSLEMGLADKTFDTYEKEVVMDVVATLFTSNIKSEDL FD >gi|281297454|gb|ADDO01000052.1| GENE 50 61442 - 63148 1330 568 aa, chain + ## HITS:1 COG:no KEGG:FMG_1176 NR:ns ## KEGG: FMG_1176 # Name: not_defined # Def: hypothetical protein # Organism: F.magna # Pathway: not_defined # 9 567 8 561 561 259 32.0 3e-67 MTNKERLFNISWTIAENYKLNNNPLFNVEDKYTASLWGYIGKYFNVSLLKDYIERFIENL SNSYELKTLLRIILENVIWDDITRERPGTLEFRQDYLKEFKEKINKSKKDKKIEFLETFY DLKTDKIPVCSNISSKLINEIIRFHSYDTFQVIEFCQELFSKYFHINKSLPVEEDKKFEV FIEKEKLQADFRQMMRKELEIDDWKLEKYNIGSAEFTGVEDEEEKRIKAEEIKGQIDLNV SLYEITKKHFGNEALPRFESQKIEREISKGIHKHIEIFTSCGDFQDKNSYFAQEMENSYR QNLEYYNKNKLVFDRASSKLAEVIKNSLLQDLEDEIVKSDSGKIIVKDIWKNKFLNDSRI FEKINKNDSKDLYVDILLDSSASQIDRKSLVASESYIIAEALSKLNIKTRVVFYNNFYNY LIVRKVKDYKDSRLKNKDIFYYNPTGSNRDGFAIKYMRYIIEKDYRKRNILIILSDGKPN DEINLGLIGANKVKGQDYVKEDAVKDSAKEILLTKLKGIYTFGVFTGEEEDIKSVKKIYG KDFCYINNINRFHEVVGIFLKTFAEKLQ >gi|281297454|gb|ADDO01000052.1| GENE 51 63266 - 63742 575 158 aa, chain + ## HITS:1 COG:CAC2475 KEGG:ns NR:ns ## COG: CAC2475 COG3467 # Protein_GI_number: 15895740 # Func_class: R General function prediction only # Function: Predicted flavin-nucleotide-binding protein # Organism: Clostridium acetobutylicum # 1 153 1 151 154 67 30.0 1e-11 MFRKIRRVKNEISLEDAKLLLKNNKRATLSVNGLNGYPHSFPINYFYNAKENKLYFHGAK MGYKIDCINKDNRATFVTYGNEVLTEDGWSYKVSSAIAYGKIELIEDREETLKFVKELAM KYYTSEKEVDEVIKRSGSAVLVYRLNIEHLTGKIVHEK >gi|281297454|gb|ADDO01000052.1| GENE 52 63836 - 65206 1418 456 aa, chain - ## HITS:1 COG:PH0575 KEGG:ns NR:ns ## COG: PH0575 COG0534 # Protein_GI_number: 14590472 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Pyrococcus horikoshii # 13 441 23 458 472 137 29.0 4e-32 MLNLLEKSPLERRKLILEGNILPTLILLSLPTIIMAIVQSMIPVFDGFFLNNYGGVLVAG AVTFCAPIVNIINGLSMGLGSAGMAIIGQFNGLGDIKRVKHASLQLLVFALVLGIICSPL LYIIGHILTNYVNKDVAPYILEYLSLYSFVMPMLFMAAIYNGIKNACGQPEATLIRMVML LILKIIFSFIFLRILRLGAKGAVFSSFCSYSIITLWLFYDLFIKKYEYQLSFKNYRPDWA TIRQFVRIGLPSMLSSMFVFLGFFLINMEVQSYGPKVLAAQGIASNISALTFTVPSSIST TITTMISMNVGNNNIKKGKSIYYESLIIGSILSIAMILIITPFSRAFVKIFQKTVMDGEI INIATHALKIYNISVFGFTLFMIVQGTLLALGRTKVTFVIGLLRVWGFRYIFIILTRHLL GVDAVFWGNLFSNTIAAVIYLIIMQMIAFESNILNE >gi|281297454|gb|ADDO01000052.1| GENE 53 65431 - 67029 1479 532 aa, chain + ## HITS:1 COG:BS_ykpA KEGG:ns NR:ns ## COG: BS_ykpA COG0488 # Protein_GI_number: 16078507 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Bacillus subtilis # 1 532 1 533 540 672 62.0 0 MLSVNNVSVIFPDKKLFDDVNLIFTPGNCYGIIGANGAGKSTFLKILAGEKEPTNGTVSL EKNKRMSKLNQDHYAFEDYLVIDTVIMGNKKLYDIGKEKDAIYMKADFSDEDGIRAAELE AEFGELGGYEADSEASTLLQGLGITTDKHNLYMRDLIESDKVKVLLAQALFGSPDILLLD EPTNGIDVRAVLWLEDFLMEFPGIVIIVSHDRYFLNEVCTHMVDIDFGKINLFVGNYDFW YESSQLALKMAKEENKKKEEKIKELEEFIRRFSANKSKSKQATSRKKLLDKISLDDIKPS SRRYPFVSFDLSREVGKEILNINNLTLKDDTRTYLKDFSMRVNKDDKIGFIGDEISITKF FQAICEEEENYEDQMKWGQTITKEYFPKDNSKFFDGVDLNLIDWLRQFSEEQSEIFIRGF LGKMLFSGDETKKKANVLSGGERVRMMFSKMMINSSNVIVLDQPTNHLDLESIEAVNNGL ISYKGNILFTSLDHQFISSIANRIIEIFPDGSYRDESITYDEYIEKYIVENK >gi|281297454|gb|ADDO01000052.1| GENE 54 67047 - 68414 1314 455 aa, chain + ## HITS:1 COG:CC3086 KEGG:ns NR:ns ## COG: CC3086 COG1680 # Protein_GI_number: 16127316 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Caulobacter vibrioides # 20 393 54 449 536 128 25.0 2e-29 MKDKLEKILKTYAHEFNLQGVNLGILKNGKKEIVSIGLRDIKNNLPMEKDTIYAIGSQTK AFTAVALGKLLYENGYSFDTPIKQLYEDFKMEDDYLTKDLRIKDGFSHRTGFPPHLAAWY NNNFKKPQEFLKILAYLPATMPLRYTFCYQSYFFILGGLIIEKLSGKSYGDYLKENIFGP LQMNNTYVLGSFAPDENKARPYDFVDGTYKEISYNYEFTKFPNGSGTIYSTMEDMMKWLD FCLHGNEKIVDRKIQEELYSPQTIIGPDTNMPELSYSKNKTYGMGWYLENYRGRKLISHG GIVDGFRAFHILVPEEDMAVSIVTNLNEAQGTELITLSVIDEALGIKKDWQEKYIKDLKA INEKKSPKEDKLKDLKNEDFSKYLGIYRDKAYGEFEFIEEDGKLYVKAFSHKLEVKESKG KKVIAFKPYNLFIPIEFEDCNLILYIDDRKIIIKK >gi|281297454|gb|ADDO01000052.1| GENE 55 68585 - 69769 1310 394 aa, chain + ## HITS:1 COG:CAC3299 KEGG:ns NR:ns ## COG: CAC3299 COG1979 # Protein_GI_number: 15896543 # Func_class: C Energy production and conversion # Function: Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family # Organism: Clostridium acetobutylicum # 1 389 1 388 389 389 48.0 1e-108 MYDFNFSVKTEILFGKDQLKYLPEKILENGSRVLICYGGGSIKKIGLYDKVISLLDENNI FYKELSAIKPNPRIDKVREGLEIIRENKLDFILAIGGGSVIDTAKLLACAVFTDKDPWKI IKKEVKIEKALKIGVILTIAATGSEMDSIGVVSNPQTKEKLSFSSPLLVPCFAIENPEFT YSVSPYQTASGVADIMGHTMENYFSLDDGCYLQNKIAEGILKTCIKFGPIALKEPTNYNA RANILWASAWAINGLLNKGKNTSWTVHSMEHELSAYYDITHGVGLAILTPRFLKYILNEK TEKMLSDFAINVFDVEDTNNYRENAKKGIEALYKFFKDDLNLPMSLEELNITDEYFEEMA EKQAKRSNGYVGGVVPLEAKDVVQIYKASMKDEY >gi|281297454|gb|ADDO01000052.1| GENE 56 69759 - 70616 819 285 aa, chain + ## HITS:1 COG:no KEGG:Nther_2740 NR:ns ## KEGG: Nther_2740 # Name: not_defined # Def: alpha/beta hydrolase fold # Organism: N.thermophilus # Pathway: not_defined # 1 272 4 280 294 120 25.0 7e-26 MNTNFLRLSSGEDIFYTYKKNVNNSKNLLFIHGNYATSYIWTDIYQSCKEIYNVYGLDLR GFGRSSYKTPARQMKTYARDVVEFICKLNLKNLTIIAWSAGGAVAMETLNELRGYLNEIY LVDSISTRGYNSPYRIFLDINEYTRNLFPMIDFYTNDLNPYQKIENFIPSYDEAEKYFSK YLFNFTRPKELFLKKIAQEMLLQRNNLDFWEAMTNFRMDKSVLKENKIPIKVIWGAYDKI ISQEDTEEILEDFNFKAKFIKFNKSGHAPFIDQKAEFLELLFIKK >gi|281297454|gb|ADDO01000052.1| GENE 57 70895 - 71782 1463 295 aa, chain + ## HITS:1 COG:lin2352_1 KEGG:ns NR:ns ## COG: lin2352_1 COG0834 # Protein_GI_number: 16801415 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Listeria innocua # 48 288 30 271 271 144 37.0 3e-34 MKKVFMVISLLALVFTLVACSGSQENANKAINEAAKNAKQENTEANKDASDSSLEDIKAK GKIVLGTSADFPPLEWVSYKDGGESYKGLDIEIAKAIADSLGVKLEIKNMAFEGLITSLN AGDVDMIIAGMEASDERKKEVDFSAPYYSGGQSLVVRAEDKDKFKTLDDLKGHKIGTQLN TVQQTFAEEKFGSDVQGYDLNNVLIEQLKNKSVDALFLSELPAKEFVYLNKDLAFIEDIG APKEKGFSVAIKKGNQTLLDEVTKIVSELKDSGKVDTWLDENIELSHQEVEEGNK >gi|281297454|gb|ADDO01000052.1| GENE 58 71845 - 72522 711 225 aa, chain + ## HITS:1 COG:lin2352_2 KEGG:ns NR:ns ## COG: lin2352_2 COG0765 # Protein_GI_number: 16801415 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Listeria innocua # 9 222 3 211 215 189 50.0 5e-48 MNFINSQINFIKTFLPAYLKGAGVTIKLSLIGVILGLTIGIVLALMKISKNKLLKFIASA YIEIVRGTPMLVQIMIVYFGLKKIIPDSLPYLKAPMLLCALSISLNSAAYVAEIIRSGIN SVDNGQMEAARSLGLTRSQAMRKIILPQAVKNILPALVNEFITLIKESSIVYTVGVAELM YSGKSIASATYQAVRPFIYAAIIYFIMTYSLSKALQVLERRLSND >gi|281297454|gb|ADDO01000052.1| GENE 59 72515 - 73237 614 240 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 239 1 242 245 241 50 1e-62 MIKVENLKKSFGNLDVLKGINEEIKDGEVLVVIGPSGSGKSTFLRCLNLLERPTSGSIFF EGKNITDKNIDINKVREEMGMVFQSFNLFNNLNIIDNITLAPKLVKNMKEDEAKEIAKKL LQRVGLPDKENSYPSELSGGQKQRIAIARALAMNPKVMLFDEPTSALDPEMVGEVLDLMK DLAKDGMTMVVVTHEMGFAREVGNRILFMDQGQIIERGEPKEVFQNPKEERTKSFLAKVL Prediction of potential genes in microbial genomes Time: Mon Jul 18 12:36:43 2011 Seq name: gi|281297450|gb|ADDO01000053.1| Peptoniphilus lacrimalis 315-B contig00079, whole genome shotgun sequence Length of sequence - 5092 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 1, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 146 - 180 -0.9 1 1 Op 1 . - CDS 377 - 1789 1160 ## COG0534 Na+-driven multidrug efflux pump 2 1 Op 2 . - CDS 1758 - 4232 2442 ## COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase 3 1 Op 3 . - CDS 4252 - 4848 374 ## TDE0348 TetR family transcriptional regulator - Prom 4901 - 4960 8.8 Predicted protein(s) >gi|281297450|gb|ADDO01000053.1| GENE 1 377 - 1789 1160 470 aa, chain - ## HITS:1 COG:MA1121 KEGG:ns NR:ns ## COG: MA1121 COG0534 # Protein_GI_number: 20089987 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Methanosarcina acetivorans str.C2A # 36 469 23 462 475 200 30.0 5e-51 MVISARSNVADMKSKNRIDQKELRRQKILSEPLLPLIVKMSVPTIVGMLIMVIYSLTDTF FVGLLNDKSMTAAIGVVFSFVSIIQAIGFWFGYGSGNIMSKKLGEQDEEEATIISSIGIA FSIISGFLIAILSWIFISDLTKFIGGNASVNLFKFTTQYIKVIIISVPFSLYSITIYNQL RLCGNVKDGMIGLLLGMFSNMILDPVFMFIFKFGFVGAGYATLTGQIIACIALTMLAKGN GNIPVSLKNVKCSKERIYHILVGGMPNFSRQVITSVSLILLNRVAANFGDSIIAALTVSS RIVAIAYMIMIGWGQGFQPICAMNYGAKKYGRVRSAFNLTVVVGTIFLIISAVVLYIFSQ HFVIAMSKDSEVISIGVQLLRMQCITIPLLAYYAISSMLMQNIGKYFWSLIISISRQGIF YIPLLYLLTNLYGKFGIYLLQPIADILSFVLAVIVVYKIINELKNEGNIH >gi|281297450|gb|ADDO01000053.1| GENE 2 1758 - 4232 2442 824 aa, chain - ## HITS:1 COG:CAC0534 KEGG:ns NR:ns ## COG: CAC0534 COG0574 # Protein_GI_number: 15893824 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate synthase/pyruvate phosphate dikinase # Organism: Clostridium acetobutylicum # 2 822 5 866 868 295 30.0 2e-79 MILDFNEIKKGNVLVAGGKGANLGEMTSAKINVPSGFVITADAYRDFLKVNGIDILIENG IKKSADDEKILLNEAEHFRGKIKSGKFPEQLENAIREKYFNLGNNTRVAVRSSATAEDLP DASFAGQQETYLNVQGIESVLNGVRNCYASLWGNRAVSYRFHQGYDQTSVSIAVVIQEMV ESEKSGVLFTVNPVNKKENEMQINASFGLGESVVSGRVTADSYIIDKSGNIIEVNIGSKE TQIIYGDKETVEVSVNSDKRKTRALNDREILELMKCGLEIEKHYGMPMDIEWAIKNDIVY ILQARAITTLKNSKNDITDNDLIEKYIKGKKIKRDTQEVMSFFLEKMPFAHRVLDFDYLM AINDQKVNILSEGGIILPRNPIIDDDGIQTFSDDGKRIGKNIFKFFNILKNMKDFEFCYK KCKDFMNIYEVEIEEIKHLNFENMTLTECGNFLEESYVLLQKLAYDRFKYALFPSVLNSK KFTKIIKKVNSNYSSFDFYWDLDNKTSVVANDVYKMAREIRKNEALKKAIISGDNFKELY KKFNDFKNISDEFMKDNGFKSDYNCYCLSAKTFLEDPDRLINILRPILNENSNESNDIKD FSKLMESVKEIYGRKYQDVEKQIKYFRYFHVVREESQYLWETLFYYVRKCVIRINFILLG DENIETGVANLFHKELLEVIKRGNLNELDKEKINRRNEKFPLAVKVWEASKLLIFKTDGD VLKGVSGSTGIAVGKVCLINSPKEFYKMKKGDILVCHLTDPEWTPLFKLASAVVADTGSA LSHAAIVAREYNIPAVLGVGFATTKFKDGDTIQVNGNIGEVKCC >gi|281297450|gb|ADDO01000053.1| GENE 3 4252 - 4848 374 198 aa, chain - ## HITS:1 COG:no KEGG:TDE0348 NR:ns ## KEGG: TDE0348 # Name: not_defined # Def: TetR family transcriptional regulator # Organism: T.denticola # Pathway: not_defined # 1 197 1 197 198 228 57.0 1e-58 MGKAFTEEEKIKIKESIMETALDLFHEKGTKSLSISELTKRVGIAQGSFYNFWKDKESLV IDLMAYRSIQKLENIEKEFSNSLTNPKKFLSEVIFKYSIDMTEKIRNQQIYQEAFRIFAS QDSKKVNRVENLYGDFLDRLIDYWYKNNVVKSVDKQGLSNAFVGSFVLCSNYIHFNEDTF EEVLHIYIESIVSRYVEI Prediction of potential genes in microbial genomes Time: Mon Jul 18 12:36:47 2011 Seq name: gi|281297448|gb|ADDO01000054.1| Peptoniphilus lacrimalis 315-B contig00022, whole genome shotgun sequence Length of sequence - 271 bp Number of predicted genes - 1, with homology - 0 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 126 172 ## Predicted protein(s) >gi|281297448|gb|ADDO01000054.1| GENE 1 1 - 126 172 41 aa, chain + ## HITS:0 COG:no KEGG:no NR:no LDAVSELEKLGENASDEKIKEAQEKINKIKDNTKKQELQGN Prediction of potential genes in microbial genomes Time: Mon Jul 18 12:37:11 2011 Seq name: gi|281297368|gb|ADDO01000055.1| Peptoniphilus lacrimalis 315-B contig00042, whole genome shotgun sequence Length of sequence - 75188 bp Number of predicted genes - 87, with homology - 79 Number of transcription units - 40, operones - 26 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 733 578 ## gi|300814268|ref|ZP_07094540.1| putative lipoprotein + Term 757 - 804 3.8 + Prom 744 - 803 11.6 2 2 Op 1 . + CDS 860 - 1465 537 ## COG0406 Fructose-2,6-bisphosphatase 3 2 Op 2 . + CDS 1475 - 2245 914 ## COG0489 ATPases involved in chromosome partitioning 4 2 Op 3 . + CDS 2235 - 3167 498 ## PROTEIN SUPPORTED gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 5 2 Op 4 . + CDS 3167 - 4936 1755 ## Sterm_0484 thioredoxin + Term 4944 - 4979 0.6 - Term 5090 - 5130 6.2 6 3 Op 1 . - CDS 5190 - 8516 3127 ## Apre_0514 hypothetical protein 7 3 Op 2 . - CDS 8516 - 10471 1436 ## spr1102 type II restriction endonuclease, putative (EC:3.1.21.4) - Prom 10585 - 10644 8.2 - Term 10574 - 10621 8.4 8 4 Op 1 . - CDS 10655 - 11506 1457 ## STH2256 hypothetical protein 9 4 Op 2 . - CDS 11567 - 12199 446 ## COG0560 Phosphoserine phosphatase - Prom 12228 - 12287 4.4 + Prom 12084 - 12143 10.6 10 5 Op 1 . + CDS 12281 - 13315 899 ## COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair 11 5 Op 2 . + CDS 13324 - 13716 385 ## Tthe_0708 thioesterase superfamily protein 12 5 Op 3 . + CDS 13732 - 14241 729 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins + Term 14246 - 14276 2.0 - Term 14232 - 14262 2.0 13 6 Op 1 . - CDS 14265 - 14660 209 ## CAR_c04830 Zn-finger containing protein 14 6 Op 2 1/0.000 - CDS 14680 - 15609 1103 ## COG0039 Malate/lactate dehydrogenases - Prom 15719 - 15778 8.8 - Term 15869 - 15908 6.1 15 6 Op 3 . - CDS 15931 - 16620 522 ## COG1802 Transcriptional regulators - Prom 16810 - 16869 10.7 + Prom 16552 - 16611 9.2 16 7 Op 1 . + CDS 16679 - 16849 56 ## 17 7 Op 2 . + CDS 16883 - 18082 1385 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase 18 7 Op 3 . + CDS 18112 - 18792 574 ## Rmet_1928 hypothetical protein + Prom 18802 - 18861 6.0 19 7 Op 4 . + CDS 18881 - 19912 295 ## PROTEIN SUPPORTED gi|126646731|ref|ZP_01719241.1| Ribosomal protein L22 + Prom 19917 - 19976 3.5 20 8 Op 1 . + CDS 20026 - 20526 544 ## Amico_1587 tripartite ATP-independent periplasmic transporter DctQ component 21 8 Op 2 . + CDS 20523 - 21809 658 ## PROTEIN SUPPORTED gi|126646729|ref|ZP_01719239.1| Ribosomal protein L16 + Term 21840 - 21897 -0.9 + Prom 22020 - 22079 10.4 22 9 Op 1 41/0.000 + CDS 22125 - 22907 194 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 23 9 Op 2 12/0.000 + CDS 22900 - 24312 1462 ## COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component 24 9 Op 3 24/0.000 + CDS 24321 - 25367 1170 ## COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component 25 9 Op 4 19/0.000 + CDS 25368 - 26609 1277 ## COG0520 Selenocysteine lyase 26 9 Op 5 . + CDS 26599 - 27051 504 ## COG0822 NifU homolog involved in Fe-S cluster formation 27 9 Op 6 13/0.000 + CDS 27062 - 27457 441 ## COG1959 Predicted transcriptional regulator 28 9 Op 7 1/0.000 + CDS 27477 - 28598 1027 ## COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes 29 9 Op 8 . + CDS 28598 - 29890 1131 ## COG0628 Predicted permease + Prom 29938 - 29997 6.7 30 10 Tu 1 . + CDS 30029 - 31261 1382 ## COG2309 Leucyl aminopeptidase (aminopeptidase T) + Prom 31264 - 31323 7.2 31 11 Op 1 2/0.000 + CDS 31346 - 32329 1120 ## COG0330 Membrane protease subunits, stomatin/prohibitin homologs 32 11 Op 2 . + CDS 32329 - 32523 233 ## COG4877 Uncharacterized protein conserved in bacteria + Term 32527 - 32570 10.1 - Term 32515 - 32557 6.1 33 12 Tu 1 . - CDS 32567 - 33181 721 ## COG1555 DNA uptake protein and related DNA-binding proteins - Prom 33224 - 33283 10.2 + Prom 33218 - 33277 9.8 34 13 Tu 1 . + CDS 33310 - 35379 2718 ## COG0480 Translation elongation factors (GTPases) + Term 35397 - 35428 2.1 + Prom 35493 - 35552 12.4 35 14 Op 1 . + CDS 35641 - 36450 1165 ## COG0286 Type I restriction-modification system methyltransferase subunit 36 14 Op 2 . + CDS 36510 - 37355 912 ## HMPREF0424_1228 hypothetical protein + Prom 37490 - 37549 4.6 37 15 Op 1 . + CDS 37591 - 39066 916 ## Vpar_0440 hypothetical protein 38 15 Op 2 . + CDS 39041 - 40138 725 ## Vpar_0441 hypothetical protein 39 16 Op 1 . + CDS 40635 - 40772 73 ## 40 16 Op 2 . + CDS 40714 - 40875 195 ## + Prom 40920 - 40979 6.7 41 17 Op 1 . + CDS 41000 - 43024 1903 ## COG3972 Superfamily I DNA and RNA helicases 42 17 Op 2 . + CDS 43033 - 43689 369 ## Phep_2002 hypothetical protein + Term 43711 - 43752 4.0 43 18 Op 1 . + CDS 43768 - 44541 686 ## SPAP_0865 hypothetical protein 44 18 Op 2 . + CDS 44538 - 45365 739 ## COG1484 DNA replication protein 45 18 Op 3 . + CDS 45358 - 45843 543 ## SPAP_0867 hypothetical protein 46 18 Op 4 . + CDS 45840 - 46574 722 ## COG3645 Uncharacterized phage-encoded protein 47 18 Op 5 . + CDS 46567 - 47619 1067 ## COG3505 Type IV secretory pathway, VirD4 components 48 18 Op 6 2/0.000 + CDS 47659 - 49509 877 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs + Prom 49524 - 49583 10.8 49 19 Op 1 . + CDS 49640 - 49915 200 ## COG0640 Predicted transcriptional regulators 50 19 Op 2 . + CDS 49905 - 50504 194 ## gi|282882732|ref|ZP_06291339.1| conserved membrane protein YvaZ 51 19 Op 3 . + CDS 50485 - 50793 324 ## gi|282882739|ref|ZP_06291346.1| hemolysis inducing protein + Term 50816 - 50855 5.2 52 20 Op 1 . + CDS 50860 - 51570 301 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 53 20 Op 2 . + CDS 51567 - 53114 769 ## smi_1717 hypothetical protein 54 20 Op 3 . + CDS 53195 - 53443 178 ## gi|282882750|ref|ZP_06291357.1| hypothetical protein HMPREF0628_1137 + Term 53489 - 53535 7.3 + Prom 53456 - 53515 3.6 55 21 Tu 1 . + CDS 53559 - 53888 412 ## gi|282882727|ref|ZP_06291334.1| conserved hypothetical protein + Term 53981 - 54010 1.4 + Prom 53941 - 54000 4.1 56 22 Op 1 . + CDS 54135 - 55787 1414 ## COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member 57 22 Op 2 . + CDS 55790 - 56542 423 ## HMPREF0837_11437 phage-associated protein + Prom 56588 - 56647 8.0 58 23 Op 1 . + CDS 56827 - 57000 200 ## 59 23 Op 2 . + CDS 56957 - 57523 517 ## BcerKBAB4_5408 hypothetical protein + Term 57549 - 57586 4.0 + Prom 57525 - 57584 2.1 60 24 Tu 1 . + CDS 57607 - 57792 330 ## gi|282882766|ref|ZP_06291373.1| conserved hypothetical protein + Prom 57815 - 57874 2.7 61 25 Op 1 . + CDS 57894 - 58619 903 ## COG3505 Type IV secretory pathway, VirD4 components 62 25 Op 2 . + CDS 58638 - 58913 366 ## Apre_1806 hypothetical protein 63 26 Tu 1 . + CDS 59024 - 59641 523 ## Ccur_08110 hypothetical protein + Term 59690 - 59730 2.1 + Prom 59781 - 59840 8.2 64 27 Op 1 . + CDS 59864 - 60175 529 ## HMPREF9243_0143 hypothetical protein 65 27 Op 2 . + CDS 60177 - 60335 376 ## Apre_1811 hypothetical protein + Prom 60365 - 60424 8.6 66 28 Op 1 . + CDS 60453 - 60671 316 ## COG3655 Predicted transcriptional regulator 67 28 Op 2 . + CDS 60675 - 61703 951 ## ELI_2923 hypothetical protein + Prom 61811 - 61870 3.7 68 29 Tu 1 . + CDS 61916 - 62179 232 ## COG2801 Transposase and inactivated derivatives + Prom 62361 - 62420 5.3 69 30 Tu 1 . + CDS 62516 - 62665 61 ## gi|313888449|ref|ZP_07822116.1| 23S rRNA (uracil-5-)-methyltransferase RumA + Prom 62730 - 62789 7.2 70 31 Tu 1 . + CDS 62847 - 62951 91 ## + Prom 62957 - 63016 2.9 71 32 Tu 1 . + CDS 63064 - 63543 568 ## COG2608 Copper chaperone + Term 63764 - 63813 1.3 + Prom 63862 - 63921 5.9 72 33 Op 1 . + CDS 63941 - 64072 71 ## 73 33 Op 2 . + CDS 64130 - 64861 568 ## COG0030 Dimethyladenosine transferase (rRNA methylation) + Term 64873 - 64918 10.1 - Term 64859 - 64907 11.0 74 34 Tu 1 . - CDS 65100 - 65189 71 ## - Prom 65352 - 65411 1.8 + Prom 64945 - 65004 6.5 75 35 Op 1 . + CDS 65162 - 65602 275 ## SPAP_0897 hypothetical protein 76 35 Op 2 . + CDS 65648 - 66037 400 ## COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase + Prom 66107 - 66166 8.4 77 36 Op 1 . + CDS 66248 - 67144 917 ## ELI_2923 hypothetical protein 78 36 Op 2 . + CDS 67125 - 67646 538 ## ATP_00026 N-6 DNA methylase 79 36 Op 3 . + CDS 67597 - 68157 532 ## MCJ_005510 hypothetical protein + Term 68166 - 68201 0.3 80 36 Op 4 . + CDS 68218 - 68532 344 ## HMPREF0837_11443 hypothetical protein 81 37 Tu 1 . - CDS 68674 - 68862 112 ## - Prom 68928 - 68987 7.8 + Prom 68750 - 68809 5.6 82 38 Op 1 . + CDS 68845 - 70485 1582 ## COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member 83 38 Op 2 . + CDS 70562 - 72064 1467 ## CLJU_c17450 hypothetical protein 84 38 Op 3 . + CDS 72141 - 72512 275 ## gi|282882773|ref|ZP_06291380.1| putative DNA gyrase subunit beta + Prom 72636 - 72695 8.2 85 39 Tu 1 . + CDS 72767 - 73294 764 ## SPG_0962 hypothetical protein + Prom 73412 - 73471 8.4 86 40 Op 1 . + CDS 73497 - 73904 262 ## PROTEIN SUPPORTED gi|167855185|ref|ZP_02477956.1| 50S ribosomal protein L31 87 40 Op 2 . + CDS 73894 - 74808 533 ## SPCG_0169 hypothetical protein + Term 74818 - 74862 -0.7 Predicted protein(s) >gi|281297368|gb|ADDO01000055.1| GENE 1 2 - 733 578 243 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|300814268|ref|ZP_07094540.1| ## NR: gi|300814268|ref|ZP_07094540.1| putative lipoprotein [Peptoniphilus sp. oral taxon 836 str. F0141] putative lipoprotein [Peptoniphilus sp. oral taxon 836 str. F0141] # 1 243 253 495 495 333 97.0 9e-90 NCGCSCKHHSMEEYNSCPCCKGKTPQIHKEEKEKNPKNKKTYNCGCSCKHESMEEYNSCP CCKGKTPKVSCDKSAKKEFKKAKNNNSSNTSKSDMDKLEPDGGMNCCCSCKCHSGQESNE CQCCKDKDLHESENDKDTQEANNEENVEIKSSDKLTDKDLKLKDGEYIDCGCGCKHHSMK EFNECPCCCGKDVHIHRLSKSEQIFDKILDFSQYAVIVLVLLSLIWFIYKVIYDSLKKNK SKK >gi|281297368|gb|ADDO01000055.1| GENE 2 860 - 1465 537 201 aa, chain + ## HITS:1 COG:FN0808 KEGG:ns NR:ns ## COG: FN0808 COG0406 # Protein_GI_number: 19704143 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Fusobacterium nucleatum # 1 189 1 194 206 99 35.0 3e-21 MKIYFTRHGETEWNKIDKIQGQLDSPLNENGINMAKKLREKARNINFSHIYSSDLNRALD TCKIICPNKKIITSPLLREIDVGYWSAKQFNDIKKTDPYLYNLYFTKPEKYNRIDGESFY ELIDRVKRFFELYVYNSDDENILIVSHGITIIAMFTIMENIEIKNFWQNRVRRNAEFNIA EYKDSKFTILKKAPLNLVNNI >gi|281297368|gb|ADDO01000055.1| GENE 3 1475 - 2245 914 256 aa, chain + ## HITS:1 COG:CAC2982 KEGG:ns NR:ns ## COG: CAC2982 COG0489 # Protein_GI_number: 15896234 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Clostridium acetobutylicum # 14 238 28 259 277 233 48.0 3e-61 MQAIEKFEFNENSNVKNVIAVVSGKGGVGKTFTTSVLASHLRRQGYKVGVLDADITGPSI PKGFGIDELARSNGREILPLVSKTGIEIISVNSILENKTTPVLWRAPIINNAINQFFSQV RWGNLDYLLIDMPPGTGDVSLTVFQSMPLSGVIIVSTPSDLVTMIVEKAVTMAKMMSIKI LGFIENMSTFKCPNCGEVHEIFGPSHIEEIAKRENVKNICKLPIDETFSQYVDKGNVEFL EIPQVDKFIEDLKNGL >gi|281297368|gb|ADDO01000055.1| GENE 4 2235 - 3167 498 310 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 [Streptococcus pneumoniae SP6-BS73] # 3 307 2 305 306 196 36 3e-49 MDYDLIIIGAGAAGLSAAIYAGRSLLNTLIIEKAAYGGRINDTASVINYPGFTNISGRDI VKEFRKHASVYETNKFSYGTVEKLVKGKDSIKVVTKRKREFTAKAVIIASGTFSKVINAK GEMEYTGRGVSYCSTCDADNFLNKDIHILGSGDLALDEADYLSNFCNSITMIIIHDENIF DGNAQAFEKIKRNPKIKFIWNHKISEIIGNEKCVKQLELENLKTGQKNVVASDGIFIFAG MSPNSNFVEGFLQLNKDGFIKTDKYMNTSVSGVFAAGDIRDKVLRQIITAASDGAIASVY AERYIRNRGL >gi|281297368|gb|ADDO01000055.1| GENE 5 3167 - 4936 1755 589 aa, chain + ## HITS:1 COG:no KEGG:Sterm_0484 NR:ns ## KEGG: Sterm_0484 # Name: not_defined # Def: thioredoxin # Organism: S.termitidis # Pathway: not_defined # 3 576 6 584 600 412 39.0 1e-113 MRIYPRGTVLYNKDKAYNGINLISAAKDGVLLISMCGDELARYNLNPMPAKMLSNGNIIS PTEFRTSDFGVSDGISLVEINKEGKILWEFSRNKFIKDRGYKEKWMARVHSDFQRQGHAL DYCHSYKEFYTNKTLMLTHDSVHVSSISDKELLDDVILEVDDCGNILWKFSFSEHFDELN FSEEAKNVIYRNPNLRITENPIGNYLDLTSISYLGANKWYDMGDSRFHPDNILFTARAAN IIGIIDRKKNKIVYTLGPGLDKYSKFSPIIGSAFATLIPKGLEGEGNLLIYDNGGSCGYG PATIFAPKGLFPFVRGYTRILELNPLTLDINWMVDPRDFGFSIPLRGYKFYSPYGGNLER LPNGNTLITLTTEGMALEVTREKELVWLWASPYRMDTENMLNNSLVYRVYRYPYNYWGIE DYPEREIKEINQSYFKLPGAGEFSTAKPINVEGAELNKDIDPLSQESESLKELRVSKEIY SRNHHRIKTISSYDFYEKTKNLTGIVIFGAIRCTHCGPLIELMTDLLDEEFPKISCYYLD IDANNSIARNLEITSIPLVNFYKNGKLVYSFKGENTYDNIADVIDEYLI >gi|281297368|gb|ADDO01000055.1| GENE 6 5190 - 8516 3127 1108 aa, chain - ## HITS:1 COG:no KEGG:Apre_0514 NR:ns ## KEGG: Apre_0514 # Name: not_defined # Def: hypothetical protein # Organism: A.prevotii # Pathway: not_defined # 1 1108 1 1103 1108 1248 60.0 0 MSQINIKTTKEVIPQCYAYTTPGVPYNEGWTKIGFTERDVYKRVREQTQTAGIKPYINWH KNAIYEGTNEFFTDKDFHAYLSKLNVKRRPNHEWFKIEPDLAKNYFNDFRENKGILKSNK TAIFYKLRKEQEEAVLMTEKYFKTHKNGEFLWNAKPRFGKTLSCYDLCMKMGFINILVVT NRPAIANSWYEDYVKFVGADSGYYFVSHVDSLKDKKFVIDNSEYLNLVHDEKTRGCIEFV SLQDLKGSIYFGGDIEKLGELSKNAQKNGKKLGRLWDILIIDEAHEGVDTYKTDIAFDNI GRKNTLHLSGTPFKALANEKFPQDAIYNWTYADEQKSKRDWDVTCEEENPYLNLPRLNLF TYQMSEIVKDRIEDGLEIDGKWENYAFDLNEFFATNERGKFTHEVDVDKFLDALTFKEKF PFSSEELRNELKHTFWLLDRVDSAKELARKLSLHPIFKEYKIILAAGDGKLSDEDSNENS YNKVIDAIKKYEKTITVSVGQLTTGITVPQWSAVLILNNIKSPSLYMQAAFRCQNPCLFT NGISAFRKENAYIFDFDPARTLKIFEEFANDLSIETNYGKAKDEDRKKNIRELLNFFPVY GEDEEGRMIELDAEKILITPRKIYAKEVVNHGFMSNFLFANISNIFSAPEAVKNIVDKMS QVKKQEKLNIDDNTLDDLNLDENKQINIPEDLIIGEAQKIFGQKIYEDIKNQVSDIYEER TISEEKNKTELDNIRKEFVEPIKKTLIEVAKTGFDNEIKKSTQKNIERKIDNSAEEIIKK VHGKWEIDNNILEVEKEKEINNAKSGLEVSQIEEKFDKKKEELEEELFKNIKEKLSDDSF VKDSTKNIVEQIETEKKVQQKKSIEDNVRDHLRGFARTIPSFLMAYGDDRTCLDNFDKII PSDVFKEVTSISLDEFRFLRDGGEYTNDKGLKDFFNGNLFDQIVFDDACKEFLLKKKELA NYFDEKNKKDIFDYIPPQKTNQIFTPKKVVIDMVDYLEEENPGCFDDPDKTFIDLYMKSG LYITEIVKRLFRSKKMKSLYPNEKDRLNHIFSKQIYGLAPSEIIYRITLNFILGFSDKIE IKKHNIKKLDSLEYAKKGILEDKLDEIF >gi|281297368|gb|ADDO01000055.1| GENE 7 8516 - 10471 1436 651 aa, chain - ## HITS:1 COG:no KEGG:spr1102 NR:ns ## KEGG: spr1102 # Name: not_defined # Def: type II restriction endonuclease, putative (EC:3.1.21.4) # Organism: S.pneumoniae_R6 # Pathway: not_defined # 16 650 20 624 625 436 40.0 1e-120 MSKLIDFELYPIQICLKNLLIDKTTKKNIVWNTNAFEHFGMAFDYQKEIPDYIFKKGFCL VPRTSKTQRTKVERTRKNAEVFTPAFIVNEMNNYLDEEWFGKKNTFNEEKNNSWLPIPFK IEFPNSKTWQDYILSRRLEITCGEAPYLVSRYDVNTGEKIEIKDRIGILDRKLRIVNENT NTKEDWIKWAKKAFESTFAFEYQGDNLLLARINLLMTFVEYFEDRWDEKVDKNLLRKISN IISWNIWQMDGLEDTSPNGAIVKDKRQINMFDEFYNKHHEENSKQKIFSRIYDWRANKSR IFKEYKENDMKKFDFVIGNPPYHEFIEIRGEQPSVYNLFYDEAIKISNYICFITPARFLF DAGKTPSNWNQKFLNSEHFKVLKYEPNATKIFSNTDIKGGVAITSWNNKKTLKPIKFYIP NKYLRNILEKVLNKSNTFFSDIIYSNTSYKYTKLFYSENPNYLNRVSGGSKRYLSSSAFD KFPEVFLNYVENTNNFIKIIGRQDNKRKSLYIKEKYINPPDNFLNYKLVLPSSNGSGSFG EIISSPFVGKPKEGYTETFVTFGKFRTSTEANNCLKYIKTKFARAMLNTKKVTQGNKNAK VWTNVPMQDFTENSDIDWSVSIAQIDKQLYKKYKLDEEEINFIESKVKEMK >gi|281297368|gb|ADDO01000055.1| GENE 8 10655 - 11506 1457 283 aa, chain - ## HITS:1 COG:no KEGG:STH2256 NR:ns ## KEGG: STH2256 # Name: not_defined # Def: hypothetical protein # Organism: S.thermophilum # Pathway: not_defined # 111 253 18 159 382 89 34.0 2e-16 MKLRKVITLTAISAMLISPVSAFAENPASTLKDTIKATEQEIKKDTKEAKEDIKEAKKDL KEEAKEAKKDLKEEAKEAKKDLKEETKEVKKDLKEEAKEAKKDLKEEAKEAKKDAKETVK VTVNGKELELENPAIIKANRTFIPVRKLVESSGAKIEWNAKDKAFTITKGEKVMTLTIGS TDMVVNGKAQKLEAAPFISDNFSYLPLRVICEEILGYKVEWKAETKEVILTSQESKKEEV KEKIEEKTEELKEDAKELKDKVAEKTGDAKEKIEEKVNENKAK >gi|281297368|gb|ADDO01000055.1| GENE 9 11567 - 12199 446 210 aa, chain - ## HITS:1 COG:CAC2227 KEGG:ns NR:ns ## COG: CAC2227 COG0560 # Protein_GI_number: 15895495 # Func_class: E Amino acid transport and metabolism # Function: Phosphoserine phosphatase # Organism: Clostridium acetobutylicum # 3 206 2 213 213 71 29.0 1e-12 MTRKIAFFDFDDTLVDCQSITILWKFAIKKQPYLIIYLFVQLLIGIIKYIFTFNFSHIKT SMVSLLKFLSEEDLKFFANNILYPKYFYRDGIKEIEKFGDDYLKFLVSASPLNYMKYFKE ILSFDYIIATELDENFQVKSKNNSGHQKVLNINKYLDELNIKIDYENSYCYTDNYKADRF MASLVANKFLINSKLKVSGFKNLYWKKTLR >gi|281297368|gb|ADDO01000055.1| GENE 10 12281 - 13315 899 344 aa, chain + ## HITS:1 COG:SA1711 KEGG:ns NR:ns ## COG: SA1711 COG0389 # Protein_GI_number: 15927469 # Func_class: L Replication, recombination and repair # Function: Nucleotidyltransferase/DNA polymerase involved in DNA repair # Organism: Staphylococcus aureus N315 # 2 342 4 351 356 228 41.0 1e-59 MRAIVHVDLDAFYASCEELDNISLRGKALAVAGKSDRAIITTANYKAREYGIHSAMPVFI AKNLCENLIIVPMRRKRYLEKSKEVFDLLSTYTDIIEKVSIDESYLDLTDINPDYKFLKE MQDNILKKTGLSVSIGMSTNKFLAKLASDWNKPRGIKIISKDEVPDILMDLDIRKIHGIG KKSEDKLRNLGIDKVCDLYNLEEDFLINLFGKSGEDIYKRIRGIDDREVQTKIKRKSLGT ENTFFPTDNRIDLENYIKIFSGEVSQDLIKRNLLGFTLTIKLKNDKFKIRTKSRTYEYGL YKKEDIYREGLILFREFYNDDKIRLIGLTVSNLSDLKIHQLTFL >gi|281297368|gb|ADDO01000055.1| GENE 11 13324 - 13716 385 130 aa, chain + ## HITS:1 COG:no KEGG:Tthe_0708 NR:ns ## KEGG: Tthe_0708 # Name: not_defined # Def: thioesterase superfamily protein # Organism: T.thermosaccharolyticum # Pathway: not_defined # 1 126 8 137 140 63 26.0 2e-09 MGKDDLRKMIDEGDFTSHNNISFHSFDGEQLILKMLPDSRHISDLNILHGGVIYTLADTA TGILCRILGKNYVTIDAHMSYISNTPKGIEIFARASFVHKGNTVSVCEVEVYTKEKLLTK GTFTYHVYKK >gi|281297368|gb|ADDO01000055.1| GENE 12 13732 - 14241 729 169 aa, chain + ## HITS:1 COG:TM1384 KEGG:ns NR:ns ## COG: TM1384 COG0503 # Protein_GI_number: 15644136 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Thermotoga maritima # 1 169 4 173 173 184 54.0 8e-47 MSLKDKVRAIPDYPKKGVIFRDVTTLLKEGQDFKEAIDKMAEKIDYEIDKVIGIEARGFI VGAPLAYKLSKGFIPIRKPGKLPCEKISVEYDLEYGTDSIEMHVDGIKKGEKVVIVDDLL ATGGTSQAAIKLVESLGAEVAGLLFLMELDDINGRQKLKNYRVDSIIHY >gi|281297368|gb|ADDO01000055.1| GENE 13 14265 - 14660 209 131 aa, chain - ## HITS:1 COG:no KEGG:CAR_c04830 NR:ns ## KEGG: CAR_c04830 # Name: not_defined # Def: Zn-finger containing protein # Organism: Carnobacterium_17-4 # Pathway: not_defined # 2 131 5 134 134 102 41.0 4e-21 MKEKFRKFMAGRYGVDSFGKFLLIPMLILLILGNIYRNSFLNFGVLLILIYSYYRMLSKD ISKRYRENQKFLELTKPITKKFNSLAVRFRDRKDYKYTACPYCNLQMRIPRNKGKVIVRC KRCKEKFEFRT >gi|281297368|gb|ADDO01000055.1| GENE 14 14680 - 15609 1103 309 aa, chain - ## HITS:1 COG:FN1169 KEGG:ns NR:ns ## COG: FN1169 COG0039 # Protein_GI_number: 19704504 # Func_class: C Energy production and conversion # Function: Malate/lactate dehydrogenases # Organism: Fusobacterium nucleatum # 2 304 6 308 318 227 36.0 2e-59 MKLGIVGAGFAGEIIAYTAAMKGLCQEIYFVDINEKKAISQAMDINDARFYYPNDVKSYS CDYEGLYECDIIVLTSGGIPETSDRLDELKTNKKVVSQYTKRIVDSGFKGIFIVVSNPCD IMAYLVKKVSGFESSRVIGAGTALDSSRANSLLSKITGISAKSINAIVMGEHGESQFIPW SQVKIAGLSFYDYKNKYKDQFINFKEDDFEDQVRKRGWEIYLGKSSTQYGIANTINAIIS AIVHDENKVINVSAMLNGQYGLDDLYISTPCLINKNGIEKIFELPLEACELKKLNKAAEL IKSYNKALV >gi|281297368|gb|ADDO01000055.1| GENE 15 15931 - 16620 522 229 aa, chain - ## HITS:1 COG:CAC0379 KEGG:ns NR:ns ## COG: CAC0379 COG1802 # Protein_GI_number: 15893670 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Clostridium acetobutylicum # 10 212 12 215 216 102 35.0 5e-22 MSRQSDCTKNISYQVYLSLKDKIMTIAYKPGDILKEVEISEEFKLSRTPIRAAIQELKNE GFVEFNNRNIVTPMSLNDYIKIFQIRENLELLSVKLATLNCNEENILALEENCKLQKKSL YKKSYQPLKFLNLDRQFHLSMAKISGNYFLVEELKRFYDLFYRYNYICGFENRKDYAIVE HENLISMIKNGNIALAEKQMKDHMANVNSLIIMSLPGKLNNLSSKSNND >gi|281297368|gb|ADDO01000055.1| GENE 16 16679 - 16849 56 56 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKLQESKLLSCVVLKYKNYNIKFIEAKLMYTYKYPGKQLTNNKKSFIMLISTKYIN >gi|281297368|gb|ADDO01000055.1| GENE 17 16883 - 18082 1385 399 aa, chain + ## HITS:1 COG:CAC1001 KEGG:ns NR:ns ## COG: CAC1001 COG0436 # Protein_GI_number: 15894288 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Clostridium acetobutylicum # 1 393 1 393 395 371 46.0 1e-102 MKLSNRIYDMPFSGTRKLTPYIEKAKEKGKKIIELYVGQPDIKTPEGFFDAIKNFKPEVL AYGANNGNPKLRKVISKYYKEKGIDFDWDEILITIGGSEALLFSLISICDPGDKVLAVEP LYTDYNTIAKELNIDIKAITTSPENGYHLPDREAIEALIDKDTKGILMNHPNNPTGTVYT DEEVNMISDIVLENDLFLISDEVYREFVYEGLEYTSFAQIEKIKDHVIIVDSISKRYSAC GARIGNIASKNKDFINNVVKLCQSRICPPTLDQEGAIELYKTPKEYLKEVNNEYRKRRDL VYGLLSKMEGIVCQKPEGAFYICAKLPVDNAEKFLIWMLENFEDNGEVVMLSPIEGFYAS EGLGTKEVRIAYVLEEDKLKRAMEILEKALVSYPNRTNY >gi|281297368|gb|ADDO01000055.1| GENE 18 18112 - 18792 574 226 aa, chain + ## HITS:1 COG:no KEGG:Rmet_1928 NR:ns ## KEGG: Rmet_1928 # Name: not_defined # Def: hypothetical protein # Organism: R.metallidurans # Pathway: not_defined # 21 223 20 221 225 141 30.0 2e-32 MDFNIQEDDKTLVIKSTNKLKVIAMGFTARNQEQMKKNLEALKKEGIEYPSSFPQVYPCI KNVLDSGDKIDVLSENTCGEVEYLILKIKNELFIGVGSDHADKKIEKKSILYSKNICPKP FKNLFWKYSQVRDHWDELIIRSWQKDGNEFIKYQDSSVSNILKPSHVLKSISSHMDDNED YIVFCGSVANITGRYIYGEEFIYEIEDPILKRNIKGSYKINNICKL >gi|281297368|gb|ADDO01000055.1| GENE 19 18881 - 19912 295 343 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|126646731|ref|ZP_01719241.1| Ribosomal protein L22 [Algoriphagus sp. PR1] # 1 324 1 318 328 118 27 1e-25 MKKNILIISMLFLAIGLIGCNKESSSAEGKSSSGDTITLKLSSAANENSTWQQGALKFSE IINDKTSGKYKIEIYTMDQLSAGNQASGIEMLQTGVTDVHMQDALVWSSVSPKAIVPALP WLLPSYEDVDKYMNGKGGEAIMEALSESGVTPLAIGESGYRQIVNMKRAIASPEDMVGLK IRVPGSNTHVSLMKLLGADPVTMSSTEVYTATQQGTIDGSENTVDLLLSQKTLEVSKYLT MWNYSYDPIYFCVSNKLWNTLNDEEKTIFKEAAVEAMQLQKDLSRKGAEKAIETIKNEYK DLEIIDKLTPDQLAAFKEKSKPIYDNGAKEFGKDLIEAFGYKY >gi|281297368|gb|ADDO01000055.1| GENE 20 20026 - 20526 544 166 aa, chain + ## HITS:1 COG:no KEGG:Amico_1587 NR:ns ## KEGG: Amico_1587 # Name: not_defined # Def: tripartite ATP-independent periplasmic transporter DctQ component # Organism: A.colombiense # Pathway: not_defined # 3 159 4 156 156 64 30.0 2e-09 MLKFWDFILKIEKFVMAIGMFIMVILNFLNVLFRNLLPQTPFSYSEELTIITFVWVLMFG ISYGFKVHAHTILDVFTKMLPKKLEPIIIFLVTVTSVLFMTQLLYTSYLTMINQIRFGQV TPGMRLPMAVNSGALMIGSFISALSVLRAGYLEYKEYKLTSKEVIK >gi|281297368|gb|ADDO01000055.1| GENE 21 20523 - 21809 658 428 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|126646729|ref|ZP_01719239.1| Ribosomal protein L16 [Algoriphagus sp. PR1] # 1 427 3 431 431 258 31 9e-68 MISIILLGVFFGLLILRIPVAVSMGLAAISGILYMGMDISIISNVFYASVAKSSLLAIPF FILTGVIMDYAGISKRLIDFANAMVGHKRGGLAIVTVVTSCFFAAISGSGPATVAALGGV LIPAMERDHYDKRFATSIVASAGGIGMIIPPSIPFVIYAMLTGESVATMFMAGIIPGIYL GILFSIAALWYIKKYQPNIVYRKKATSEERKKAFKDALWGIMTPVIILGGIYSTLFTATE AAGIAVVYSLFVGIFVYKSINLKNLVDLFMDSAVSTGLIMFIMGSAGIFTWILTTSGVAL QLSNALLGISKSPIMMILITQVIFLIAGCFVDSASGFYLLLPILIPVVKSIGYPMYAFGV LATVNFAIGQITPPVGSNLFVACNISKLSMSDLTPKLVPFLAVGVFAILTMCFFPQIITF LPNLLGLS >gi|281297368|gb|ADDO01000055.1| GENE 22 22125 - 22907 194 260 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 1 238 20 246 329 79 27 5e-14 YFENMGGFMAKELLRIENLSAGVDDKEILKDISLTINSGEVHVIMGPNGSGKSTLANVIM ANPVYTVNSGKIYLEGEDISELSTDKRANKGLFMSFQSPEEVPGISVENFIRTAKMNKED KNIPIIKFQKDLKAEMKELSMNESYAERYLNVGFSGGERKKSEILQMLMLNPKLAILDET DSGLDVDATRIVASGIEKFLNKDNAVLIITHHQELVRNIVPDYVHILVNGRFVKKGDASL VGKIENEGFGWIKNGAEIDD >gi|281297368|gb|ADDO01000055.1| GENE 23 22900 - 24312 1462 470 aa, chain + ## HITS:1 COG:CAC3289 KEGG:ns NR:ns ## COG: CAC3289 COG0719 # Protein_GI_number: 15896534 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, permease component # Organism: Clostridium acetobutylicum # 10 468 9 466 466 639 64.0 0 MTKKERTYVEDMDRGIYDIKNAFEYRYKTSKGLNEEIVREISEEKNEPKWMLDYRLKALE IFNNSKNPVWGPDLSDVNIEDITTYIRPKADLSTSWEDLPEDIRNTFDKLGIPEAEKKQF LSGVGAQYDSEVVYHSIQKYLRDQGVIYTDFESGLREYPEIVKKYFGTCIKPELHRYAAL HYAVWSGGSFVYVPEGVNVDIPLQSYFRLNAPGAGQFEHTLIILEKNSYCHFIEGCSAPR YNVVNLHAGAVELFVAENSTLRYSTIENWSRNMYNLNTKRAIVEKNGKIQWISGSFGSKV SMLYPTSVLKGEGSTSEFTGISFAGAGQNLDTGAQVVHLAPNTNSFIDTKSISKNGGIAV YRGLVEFSEDAKNSKNTTSCESLMLDEDSRSDTIPTIRLKNSEVDVGHEAKIGKISDQVI FYLMTRGLSEEDAKQLVVRGFAEPVAKELPMEYAVEMNNLINLELVGSIG >gi|281297368|gb|ADDO01000055.1| GENE 24 24321 - 25367 1170 348 aa, chain + ## HITS:1 COG:CAC3290 KEGG:ns NR:ns ## COG: CAC3290 COG0719 # Protein_GI_number: 15896535 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, permease component # Organism: Clostridium acetobutylicum # 4 346 7 363 366 181 34.0 1e-45 MKIKGNELSFKTFSWMKVNDCEIQVPKIGKDLIPMESSEKYVRHLKEFDNLKYGISQEAL DLVKEDMNLYRIYETIKGEDIVYNPCYFKTDDDNPNLVDVQDIIAHEGSKIKVFLDYYSE GKKEKFRNTLIRILAEKDTEVSLFVIQREGSEAKSLESIGIFAHENAKVNLCQYQLGCGK LYTNYKCLLDGKKSEAHVNSVYFGQGEEELNLFYEMTHKGEKTTSSILVNGALKDKAYKN FKSNLDFLEGCNDAVGSEGEFAVLLSDDVHSISVPLMLCHEDDVEGNHASSSGKIDPQIL FYIMSRGFSYDEAEALIIESKFSQAIDLLDNEELEEEVWQSVRKILVK >gi|281297368|gb|ADDO01000055.1| GENE 25 25368 - 26609 1277 413 aa, chain + ## HITS:1 COG:CAC3291 KEGG:ns NR:ns ## COG: CAC3291 COG0520 # Protein_GI_number: 15896536 # Func_class: E Amino acid transport and metabolism # Function: Selenocysteine lyase # Organism: Clostridium acetobutylicum # 12 413 7 408 408 459 57.0 1e-129 MLSREEILDIRKDYPFLNLKVNGEKIVYLDNAATTQKPQVIIDNIAKFYRGENGNPHRGA HYLAMKSTEVYEGARETVRKFINAKSPSEIVFVRNATEALNLLAYSYGLNNLKKGDEILI SIMEHHSNLVPWQMVAKKTGAILKYLYVDKDGQIPFEEIENKVNKNTKMFSCTLASNVLG TVPDAKKIIKYVRKNSDAVIISDGAQYVPHHKIDVCDLDCDFLAFSGHKMYSATGIGVLY GKEELLNSLSPFLSGGDMIEYVYEDKSTFLKSPQRFEAGTQNVEGAVSLAAAINYVESIG LEKIDEYEKYLTKYCYEKISKLDYLDVYTTPDENRAPVISFNFKQAHPHDVASILDNYGI AVRSGHHCAQVLHRFLGCNFSVRASFAIYNTVEEVDYFIEHLEDVRRMLGIES >gi|281297368|gb|ADDO01000055.1| GENE 26 26599 - 27051 504 150 aa, chain + ## HITS:1 COG:CAC3292 KEGG:ns NR:ns ## COG: CAC3292 COG0822 # Protein_GI_number: 15896537 # Func_class: C Energy production and conversion # Function: NifU homolog involved in Fe-S cluster formation # Organism: Clostridium acetobutylicum # 1 143 1 143 143 159 55.0 2e-39 MNLNQIYTQMVLEQSKNKANRRDLDHATHKELGHNPSCGDEITLQLDVEDGIIKDISYTG QGCAISQASTSIMCDTVKGLKVEEAIELSKKFIGMIKGQLRDEEELEDLGDGIAFINIRN MPARVKCAVLSWYTLKDILENDKREGSFTP >gi|281297368|gb|ADDO01000055.1| GENE 27 27062 - 27457 441 131 aa, chain + ## HITS:1 COG:CAC1675 KEGG:ns NR:ns ## COG: CAC1675 COG1959 # Protein_GI_number: 15894952 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Clostridium acetobutylicum # 1 131 1 129 139 110 44.0 9e-25 MKLSTKGRYGLMAMYRLSQNSGKGPMSLKDIADIENLSEAYLEQLFALLKKRGLVISVRG AGGGYELAKAPNEIHIGDIINALEGDIKLSCCDTNKRLECAKINGCPTKDILKELQSRME EVMDSLTLADM >gi|281297368|gb|ADDO01000055.1| GENE 28 27477 - 28598 1027 373 aa, chain + ## HITS:1 COG:MA3264 KEGG:ns NR:ns ## COG: MA3264 COG1104 # Protein_GI_number: 20092080 # Func_class: E Amino acid transport and metabolism # Function: Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes # Organism: Methanosarcina acetivorans str.C2A # 1 372 60 436 448 374 49.0 1e-103 MDNAATTKIKDKVLDAMLPYLKENYGNASSIYSLGQKSKAAIENSREIIAKALKVQSKEI YFTSGGSESDNWALKGSLKNNKINHIITSKIEHEAIINSCKFIESWGNKVDYISVDGEGF VNLEELQEKITEDTNLVSIMYANNEVGTIEPIDEIIKICNDKGAPIHVDAVQALGSLEID LSDKNIDMMSFSGHKIGAPKGVGILYVRDGFEISSFIHGGEQERRKRASTENVASIVGLG LAVKDAVNNLEERKKYTEKLRDYFIEKLLSLPGVKLNGSRQNRLCGNINISFSNLQKQVL LPFLDLHGICASQGSACTAGSLKPSHVLLAMGKSQEEANNPLRLTINYNNTKDEVDYVFE IIKEAVNKFKVVV >gi|281297368|gb|ADDO01000055.1| GENE 29 28598 - 29890 1131 430 aa, chain + ## HITS:1 COG:BS_yueF KEGG:ns NR:ns ## COG: BS_yueF COG0628 # Protein_GI_number: 16080231 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Bacillus subtilis # 53 413 13 342 369 122 27.0 1e-27 MIEQISGNTGRFVVYAIVTLSILLLSLMIYYLINIGNRFIEGDKRIKIDLKLIIKIFIAI VILYLVTIIFEKYTILGYTLWSLIIGIIFAYVIDPIVNFLERKGIKRPFGVIIVYITTLI VFAILLVTVIPKTITEITNLLASLPPMIDSMSRGLTKFFYKLAEDYNINLPPSFLNMLSG TTDGVSKSAKLVTNSQDPLTNMFNSFSNAITNILDNVQKSALDSLRSVVVKLYGLVTSTL KIVLVLIFSFYFSIGKEKYLKSFKKSIPNKYRDDVNYLAVRINTSLQQFIRGRLLLALFV GFLTMIYLLILRVDFAIVIGMITCIADIIPYIGPFLGFVPAVLFAFMDAPLKALWVSILF ILIQWAENNILAPKLIGDSTGLNPLAVLISIIIGGGVFGIWGMVVSVPLVSIILILLDFF KLKYNENKVD >gi|281297368|gb|ADDO01000055.1| GENE 30 30029 - 31261 1382 410 aa, chain + ## HITS:1 COG:BH2245 KEGG:ns NR:ns ## COG: BH2245 COG2309 # Protein_GI_number: 15614808 # Func_class: E Amino acid transport and metabolism # Function: Leucyl aminopeptidase (aminopeptidase T) # Organism: Bacillus halodurans # 3 409 4 409 410 341 42.0 1e-93 MNLEKMFDKYADLVIKCALKIKAGDILVIRSPIEASSLTENLVKKAYEEGAKKVQVDYSD ENITKLKYTYESEKTLSQVPEFLIEKENYFINKKAKYLSITGGNPELFKGIDSSKIKAAN VANGIAFKDFSEKLMSNYTSWCVIGAATKAWATKVFPDLDEDEAKLKLWEEIFYTVRLFD DDPVESMNKHIENLDKYAEFLNKNNFRYLHYKSKKGTDLIVELPKGYIFVGSEEKNSFGE DFVANVPSEEVFSLPHKYGVNGIVYNTKPLNHNGVIVDKFYLKFKDGKVIDFDAEVGLDE LKNILSSAKDSDRLGEIALVPYDSPISKRNILFFNTLYDENASCHFALGKAYPTCLKGGE NIDEKDYDKYGINDSIVHVDFMVGDESTQITGQRWDGTIVKIFEDGNFAI >gi|281297368|gb|ADDO01000055.1| GENE 31 31346 - 32329 1120 327 aa, chain + ## HITS:1 COG:SP2132 KEGG:ns NR:ns ## COG: SP2132 COG0330 # Protein_GI_number: 15901946 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Membrane protease subunits, stomatin/prohibitin homologs # Organism: Streptococcus pneumoniae TIGR4 # 1 327 1 335 335 399 62.0 1e-111 MKEKILKRKSNGFLLLLVNLLATIFSSGMIIYLATKEKYVLMILFVFISILSLINYAGFK MVGPQEAIVLTLFGKYIGSIKSNGFYYVNPFVVSVNPAAKTKLGQSADVDKESKNSNPNV QQVNKKISLKVMTLSNSRQKVNDVLGNPVEIGIAVMWKVVDTASAVFNVDNYKEYLSLQC DAALRDIVRIYPYDVAQNVDTTGDGVPDDGSLRGSSRVVAKRIKEEIQNRVEFAGLEIID ARITYLAYAPEIAQAMLRRQQASATVDARTMIVDGAVDMVKMALDKLSTEDIVDLDEERK AAMVSNLLVVLCSNNEVSPVVNSGSLY >gi|281297368|gb|ADDO01000055.1| GENE 32 32329 - 32523 233 64 aa, chain + ## HITS:1 COG:SP2133 KEGG:ns NR:ns ## COG: SP2133 COG4877 # Protein_GI_number: 15901947 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 3 63 6 66 66 89 72.0 2e-18 MAKKQIPLRVSEELYNAIASWAEDDFRSINGQIEYLLTECIRQRKKNGSPISKEIDKPPD IDIK >gi|281297368|gb|ADDO01000055.1| GENE 33 32567 - 33181 721 204 aa, chain - ## HITS:1 COG:BH1333 KEGG:ns NR:ns ## COG: BH1333 COG1555 # Protein_GI_number: 15613896 # Func_class: L Replication, recombination and repair # Function: DNA uptake protein and related DNA-binding proteins # Organism: Bacillus halodurans # 2 204 10 210 210 107 33.0 1e-23 MENIFKNIKNIIIFVLVLVLGLVLYNVNSNENKFDENENYLATSEDSDFSNKDKDEDENE EIYVHISGAVNKPGLIKLKNGDRLVDAISLAGGARDDADLDSCNLAKKLSDEDKIYIKTF DESADNNFNIDSSTAKAISSNILINLNSASKDELMKIPGVGPKTADKIIDYREKFQFKSV EDLKNVDGIGDKKFEKLKDYLCVN >gi|281297368|gb|ADDO01000055.1| GENE 34 33310 - 35379 2718 689 aa, chain + ## HITS:1 COG:FN1546 KEGG:ns NR:ns ## COG: FN1546 COG0480 # Protein_GI_number: 19704878 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factors (GTPases) # Organism: Fusobacterium nucleatum # 1 686 3 690 690 725 53.0 0 MKVYKTENVRNLALVGHSGSGKTNLTESMLFQSGATKRLGNVTDKNTLSDFSKEEMERGT SIGTSIIPVEWRNFKVNIIDTPGYMDFSGEVIGALRASEAALLVIDATSGIEVGTERAWK YAENIGLPRIIFINKIDGENVNFRKLMEELEESFGKKVIPFSVPIGEGENFVGVTDVIYQ KGFKYENAAPKETELNHDQVKATERMYEEIAEVVAGSDEVLMEKYFNGEKFTREDLLRGV TTALLEGDAVPLLVGSGEKGIGIDILLNTIVNYMPAPNDKRAHTGFRYEEGEEREISEKD PFAAVVFKTITDPFVGKISIFKVISGKLKKDTPLYNSSKEEAEKLGGVYVIRGKNQMEVE EICAGDIGATTKLAVTGTGDTLCTKDHIVKYKRIKYPQPVLFYAIEAKTKGDEEKLSTSL RKLREEDPSFVIERNAETKQLTIGGLGQVQLDVILEKLKNMFGVEVVKVPFIIPYRETIK KTASVQGKHKKQSGGAGQYGDVWVRFEPCQEDFVFDEEVFGGSVPKNYFPAVEKGIIEAK EHGVLAGYPVTNFKAVLYDGSYHDVDSNEMSFKIAASIAFKKGMEEANPVLLEPIMKVEV SIPDSYLGDVMGDMNKRRGRILGMDQQRDGSQLLIAEAPQSEMFEYSIDLRAMTQGRGNF NMEFVRYEEVPANISQKVIEKAKADKEKE >gi|281297368|gb|ADDO01000055.1| GENE 35 35641 - 36450 1165 269 aa, chain + ## HITS:1 COG:NMB0829 KEGG:ns NR:ns ## COG: NMB0829 COG0286 # Protein_GI_number: 15676726 # Func_class: V Defense mechanisms # Function: Type I restriction-modification system methyltransferase subunit # Organism: Neisseria meningitidis MC58 # 5 253 4 246 514 283 56.0 3e-76 MDNNESIQRSELYRKIWAIADDVRGAVDGWDFKQYVLGILFYRFISENIREYFNHAEHEA GDLEFDYGKISDQEANEDFRPGTVEDKGFFILPSQLFENIVKTARTNENLNTDLANIFKE IEASAVGFASEDDIKGLFDDIDMTSSRLGGSVSEKNKRLADIIEGIGQINFKDFRNNDID TFGDAYLYLISKYATNAGKSGGEFFTPQTVSKLLARLVMDGKNKINKVYDPTCGFRVIIM TQANSQVNTRVLELLPKFKIKKMNCWCAV >gi|281297368|gb|ADDO01000055.1| GENE 36 36510 - 37355 912 281 aa, chain + ## HITS:1 COG:no KEGG:HMPREF0424_1228 NR:ns ## KEGG: HMPREF0424_1228 # Name: not_defined # Def: hypothetical protein # Organism: G.vaginalis # Pathway: not_defined # 2 278 5 281 286 417 76.0 1e-115 MSKVKKDTIQAKGFAIQIYTEDFKNDYISLTDIARYKNVHEPKDVVKNWLRVRDTIEFLG LWETIHNPNFKGVEFDSFRKEAGTNAFTLSPQRWIENTNAIGIVSKSGRGGGTFAHPDIA MEFASWISAEFKLYLIQDYKRLKSDENSKLSLGWNLNREISKINHKIHTDAIKEYLLKDL TNEQLSYKYASEADMLNVALFNKRAKQWREENPDLKGNMRDYASLNELLVLANMESYNAI LIGKGMEQKERMIELRKLARTQLISLEKLGDSGIKKLEGKK >gi|281297368|gb|ADDO01000055.1| GENE 37 37591 - 39066 916 491 aa, chain + ## HITS:1 COG:no KEGG:Vpar_0440 NR:ns ## KEGG: Vpar_0440 # Name: not_defined # Def: hypothetical protein # Organism: V.parvula # Pathway: not_defined # 5 489 4 494 496 354 40.0 6e-96 MRNSKLSEHTFSKGRFITPLNSLPLMQELEDEKSWTYGRMPEYIWIGLILKYFGREEGLK KSYYIISKIHNVAPALYTVRLSQILKLDMNIQEEIYEYIISLGVKDAISPLTIFLTDSQA PVFAKYFYNSKQGIGDRCKAIVETMSEIMDHQSNEATDIRFVALYFNLLSGKMHLLKEQV NLLISYPASKHIDEIMRMARPTVRSLEMMILTFENTDSEYLTGFWRCVSEMTECDIFVIN FPEENRSITAYMESLHEVFVYLSELLIASNMLDEKMKVLLGLATYSYKRLKEIYRHQLFN SISGRSCVRVLIEDYIMMKYLIKNEAFHENLWRDYQLYGMGLYKLVLARHRESDCLEESH FDEKYIEALVNEFKGEEFINMDTRYFDKQNIRSKAESVNEKSLFGLYYDYDSSFEHGLWG AIRESSLLKCNNPAHKYHCVPDIEDEIVLKTVLPDCVMIMNKTILFLNELYGIPEQLLNE VINYELKPIIK >gi|281297368|gb|ADDO01000055.1| GENE 38 39041 - 40138 725 365 aa, chain + ## HITS:1 COG:no KEGG:Vpar_0441 NR:ns ## KEGG: Vpar_0441 # Name: not_defined # Def: hypothetical protein # Organism: V.parvula # Pathway: not_defined # 1 315 1 326 366 111 28.0 6e-23 MNLNLLLNKIHLIQIEYKKLLVSLLPKFKSGYAPEALDEINLFWLRRIEEVKLYLKNWFP GKNSYVFTAATFMDFDDNEHLPFLLMGNKHILDDSLSKYSLIRSEMSEGKDADFLYKQIS VTAEDNLKVLENIHNEILILPLRLLNQSNDQKVFEEAGEQAFVSLFNGIYSLNEYFEKCN SIDDIIHFARDDIERLVMFSEDDDVMLDFKERFRIALRDTKYMVDPNRPDSYNFFMLVFG FIQQALDIIVSCVEYECIPYIRYPVSLHYISMLSQSMLDIEHVIMLRFRMNVGFVVYKLC DKSKLASVCLEDFLEKNKIYNFNDKLFNALAKYKINEKNFFKHKITQLATDELDAFYNFL SGEIN >gi|281297368|gb|ADDO01000055.1| GENE 39 40635 - 40772 73 45 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MRRLKEKTSFVTVSGRINNKTKPEKLYESCGFEDKVLWHILMEKD >gi|281297368|gb|ADDO01000055.1| GENE 40 40714 - 40875 195 53 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKVVASKIKFYGIFLWRKTNSPPEYIENLVSVSVDIAIRLNTRVSCHNSDRGK >gi|281297368|gb|ADDO01000055.1| GENE 41 41000 - 43024 1903 674 aa, chain + ## HITS:1 COG:STM2767 KEGG:ns NR:ns ## COG: STM2767 COG3972 # Protein_GI_number: 16766079 # Func_class: R General function prediction only # Function: Superfamily I DNA and RNA helicases # Organism: Salmonella typhimurium LT2 # 83 617 77 603 660 369 39.0 1e-101 MNNIDSGLFFNSFSQSSDNRIKNLAEQIKFFIEKNNTQVYLLDKILGVKNKLNYDVQNVI YVAIPNYPILLIFDDDYNEEQIKDYLDDLKEDIGQLSVKYDYNYVLDRPRKWNAEWFEFY TWSDFDFYSFIKKSKIDKPNDRRKIELLISLITGSINDIEKIGKDVPETLLDKVKKQIML LDGKQSHFIYDRELKNQVIIQGMAGTGKTELLMRKIKELYVGEENSRIAFTCHNKVLASE MKLRIEKFFNFMKVEEQIDWENRLKVFHSWGSKYDEKLGMYSYICKKYDIPYLNYREART FDNACKNAINALHELGDIESIFDYIFIDESQDFDQSFFELCKLVCKNTVYIAGDIFQSIF DDSKESDLKADYMLDKCYRTDPRTLMFAHAIGMGLFENPPLNWLKDEEWKACGYNVTRDF NKFKLTREPLRRFNDVQSTNSIIVQSSNSSELHRIVLDNIKKLKVDNSTIKPDDIGIIII CNNYNSMIKFSYELKNDLLLELGWNSAIGVETKYKESNSVYISNENNVKGLEFPFTISVL LTDVGNSIKLRNSLYMSLTRSFITSYLIMNKDTIDERFIDIYINASIEIIEKGVLNLEEP SDEEIKNMKNKITMQKTKPLGTLEQVNELLNLKKYSFLSEEDKNLIINKVKSNWSTLSSD EILNKAKNLADSLG >gi|281297368|gb|ADDO01000055.1| GENE 42 43033 - 43689 369 218 aa, chain + ## HITS:1 COG:no KEGG:Phep_2002 NR:ns ## KEGG: Phep_2002 # Name: not_defined # Def: hypothetical protein # Organism: P.heparinus # Pathway: not_defined # 11 215 14 212 218 81 33.0 3e-14 MKKLELCIKRNLFNNFKSIRSKKDIILLLLESIKNLMLYRDNIVEFSDVDIITDDDEMRI VIYIDKMKRIFYCTKNKVQSLSFPFNVNKDNDIKFYYKNIEIDFKLISTLIRIFSTDNMD NSLTLIDSLLNDYEYSNSTKEYQNLLEELLLSLSIFEDGYLRFDFDDIENEDETYHPIHH IDFYYSNSNTFKLGIMDKISLKKSIEIIDINKKCLNIT >gi|281297368|gb|ADDO01000055.1| GENE 43 43768 - 44541 686 257 aa, chain + ## HITS:1 COG:no KEGG:SPAP_0865 NR:ns ## KEGG: SPAP_0865 # Name: not_defined # Def: hypothetical protein # Organism: S.pneumoniae_AP200 # Pathway: not_defined # 1 257 1 257 257 409 96.0 1e-113 MNFDYFYNRQSEMYNFIRLPMVLMEDEIFKSISIEAKVLYSYMLNRMGLSYKNGWIDEDG KVFIYYTIESIKDQFNCASEKANKLIAELDIKSGIGLIEKKRQGLGKPNRIYVKDFMSIF NNMELKNQEVRKTKFQKFDNRNSRDSNIESQDFRKSEGDYNNISNNELRNNDFNKGQKPY GIYKNIFLTDEEYKDLINELGSRISEYIDRLSSYMKANNREYQDHKATIINWYLNDQAKN INENSTRKMNYDIGESL >gi|281297368|gb|ADDO01000055.1| GENE 44 44538 - 45365 739 275 aa, chain + ## HITS:1 COG:CAC1933 KEGG:ns NR:ns ## COG: CAC1933 COG1484 # Protein_GI_number: 15895206 # Func_class: L Replication, recombination and repair # Function: DNA replication protein # Organism: Clostridium acetobutylicum # 22 267 27 277 282 120 33.0 4e-27 MKSLKDFVLRENDIERNGHIYCKVCGKRVDGELLDLGFTKFIPRIKCECEIKRDKENAER EILTRISSLKRDCFSSPNQHQYTFEKYLNEKGQAYKVAYNYARSFEQMNEDNVGLLFYGD VGSGKTYLACSIANELIEREQVKVKIMNLSQVINQIQKSAFKVDSNEIIDNLSNIPLLIL DDLGIERDTSYAREQVYNIINSRYLKGRPTIFTTNLSLEIIQNPNIDLEYQRIYSRILEM TIPVKVTGEDFRRKIHQEKLRKYKELLLYGGGIDD >gi|281297368|gb|ADDO01000055.1| GENE 45 45358 - 45843 543 161 aa, chain + ## HITS:1 COG:no KEGG:SPAP_0867 NR:ns ## KEGG: SPAP_0867 # Name: not_defined # Def: hypothetical protein # Organism: S.pneumoniae_AP200 # Pathway: not_defined # 1 161 1 161 161 192 98.0 3e-48 MINEEVSRSSLNLEVRLVKATSKAILDALKKVHKQIEEQGGLKNVIKNNGEEVKLKDMVK KVQLEEINLKDPELKELKKILNKHGVKFSVMKDKETGNHSVFFQSKDIKVMEHAFKKAVK ISERKADRKDSITKTINKFKDMAKDTISKDKVKNKHKEQSL >gi|281297368|gb|ADDO01000055.1| GENE 46 45840 - 46574 722 244 aa, chain + ## HITS:1 COG:SPy0980_2 KEGG:ns NR:ns ## COG: SPy0980_2 COG3645 # Protein_GI_number: 15674990 # Func_class: S Function unknown # Function: Uncharacterized phage-encoded protein # Organism: Streptococcus pyogenes M1 GAS # 143 229 31 117 125 105 59.0 8e-23 MISNLKTFENKNFGKLTIIEKDGEFFFIANEVATMLGYANPRKAVYDHVDEEDKGVTKWN TPGGIQNISIINESGLYSLILSSKLPQAKIFKAWVTREVLPSIRKNGGYIAGQEKKTNEE LLADAILVANRIIAEREEEIEELRPKADYYDKLVDYNLLTNFRNTAKELGIPQNQFISFL MEKGLIYRDKKKKLLPYADKNKGYFEVKEWVDPLGTLVGIQTFITPKGRHYPLILLDSEG FYDE >gi|281297368|gb|ADDO01000055.1| GENE 47 46567 - 47619 1067 350 aa, chain + ## HITS:1 COG:CAC1969 KEGG:ns NR:ns ## COG: CAC1969 COG3505 # Protein_GI_number: 15895240 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type IV secretory pathway, VirD4 components # Organism: Clostridium acetobutylicum # 153 331 157 326 591 106 34.0 7e-23 MNKILEAILSDIKNLIKIDNPKKFILANIPYLSFFYIGNIFSKHINSYVGGDSIDRIMVG ISDIGTLSYIPSLNPRDLLVGISVAALVKLIVYGKGKNKKKYRQGKEYGSARWGESKDIA PYIDPKFENNVLITNTERLTMNSRPKNPKYARNKNVLVIGGSGSGKTRFYVKPNLMQMHS SYVVTDPKGTLVLECGKMLYENGYDIKILNTINFKKSMKYNPFAYLRSEKDILKLVQTII ANTKGDGEKAGEDFWVKAEKLYYTALIGYIYYEAPEEEKNFKTLLDMIDASEVREDDETY MNPIDRLFEALEKKAPSHFAVKQYKKYKLAAGVIELRRTLNHYFSEICTS >gi|281297368|gb|ADDO01000055.1| GENE 48 47659 - 49509 877 616 aa, chain + ## HITS:1 COG:lin1623 KEGG:ns NR:ns ## COG: lin1623 COG1961 # Protein_GI_number: 16800691 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Listeria innocua # 5 299 6 301 301 320 55.0 4e-87 MRNFEKITALYERLSRDDELQGESNSIINQKKILEEYASKNNLSNIIHFTDDGISGTQFD RPGFMAMMNGVNQGNIGCIIVKDMSRLGRDYLKVGQCMEILRQKGVRLIAINDNVDSFYR EDDFTPFRNIMNEWYARDTSRKIQSTFRSKGESGKHTASTPPYGYIKDEKDKNKWIVDEK AAEIVRRIFNMTMQGNGPYRIAKILESEKVDIPAYHQQKLGYGLYQSKNFEHPYRWCSST IASILKKQEYLGHTVNFKTRKHFKDKKSKYVSEDNWLIFENTHEPIIDQETFDNVQRIRG NVKRYPDGWGEYHPLTGLMYCADCGSKMYVHRTSNYKNVPYYVCSNYKKVPCGTLCPSAH RIKAEAVLNLIRETLKDIKKNLDEDNEDFIRSIQNEMEEKEKIEIEKKKIRLTESQNRLQ ELERLMCRIYEDMILNKIPNSRYEILNNQYETEQITLSKEIKALELEISRYEKETDRAKK FISLISRYENFDELTTTMINEFVEKIIVHERDRKGSQTSKQKIEIYFNFIGNYELPQAEL SEEEKQKLEEEERKIKERKDKLHQNYLKRKASGKQKEYEDKYKARREQKKQEKLKILKRV GIPITEYMCTHKTDCK >gi|281297368|gb|ADDO01000055.1| GENE 49 49640 - 49915 200 91 aa, chain + ## HITS:1 COG:BS_yvbA KEGG:ns NR:ns ## COG: BS_yvbA COG0640 # Protein_GI_number: 16080432 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus subtilis # 5 84 3 82 90 81 45.0 3e-16 MGFPNTFKALADPVRRDILLSLKQKSLTAGEIAEKYDLSNSTISYHLSLLKKAELVTERK YKNFIYYDINISVFEEMIIWLSQFQGVENEE >gi|281297368|gb|ADDO01000055.1| GENE 50 49905 - 50504 194 199 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282882732|ref|ZP_06291339.1| ## NR: gi|282882732|ref|ZP_06291339.1| conserved membrane protein YvaZ [Peptoniphilus lacrimalis 315-B] conserved membrane protein YvaZ [Peptoniphilus lacrimalis 315-B] # 1 186 1 186 199 317 100.0 4e-85 MKNKKWYVVIILLSFSASIYLLTNGNGEISFYKLYILPMIISVFSIGLDIIGGMLAKRDR LPHKLVLPIAMSVPVLFSISQYGKYVFNQANENYTQKIIHVLVALTIIAVGNYLPKTKPS RFVGLKFFWLLDRPVLWFKVHRLAGYLWIISGILILSVGLSNKWFWMISYAMLLYVIPLI YSIVLLKKEKEEKNEIIKD >gi|281297368|gb|ADDO01000055.1| GENE 51 50485 - 50793 324 102 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282882739|ref|ZP_06291346.1| ## NR: gi|282882739|ref|ZP_06291346.1| hemolysis inducing protein [Peptoniphilus lacrimalis 315-B] hemolysis inducing protein [Peptoniphilus lacrimalis 315-B] # 1 102 1 102 102 179 100.0 7e-44 MKSSKIKHLIISSILCLATVGIFLVFGKNLPDIVPVHWDSSGNVNGTIAKTYLTYGAPFA YLLINFIAFAKFQGSEKATWKYYLVPLSVIAISFLVIFLALR >gi|281297368|gb|ADDO01000055.1| GENE 52 50860 - 51570 301 236 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 2 221 5 225 305 120 31 2e-26 MLKINNFSKTYSNGHVAIANLNLTVEAGDIYAFIGSNGSGKTSTIKAIVGIHDFDGEIIV NGKKVSRKNETYKKDIAYIPDNPDVYENLTGFQYVNFVSDLYEVAKNVREEKLDYFSNLF EMKSFLNNTISSYSHGMKQKIVIISALIHSPKLLVMDEPFVGLDPKSSYLLKEEMRKLAR NGGAIFFSTHVLEVAEKLCNKIAMIDNGHLIFEGKTTEILKTSDGLEQYFMEMIKK >gi|281297368|gb|ADDO01000055.1| GENE 53 51567 - 53114 769 515 aa, chain + ## HITS:1 COG:no KEGG:smi_1717 NR:ns ## KEGG: smi_1717 # Name: not_defined # Def: hypothetical protein # Organism: S.mitis_B6 # Pathway: not_defined # 1 513 1 518 518 238 31.0 7e-61 MKNTVILVKNQVINLLNIGNGEKNKKETLIYTSLSLFSVFMLVCLYNFFSIKSIIEIGLY KYAVSYGVSISFFFVVLATIFRSNSIFFYNKDFEMLSSFPVKKSEIIASKFFLLYLIDLI ICESVLLPDVILLLLKQYISIELFLIFLVASIIIPIIPMCVASGLAILIEMLGSLCKRKN IVNITLSFLLFMGYFIVILINREAKYSALEKIIENKLIKIFPFAKLFYIGESLQIRLVIF LFISVAIFSLYFTFSMKNYDKIHLFLNRSFQGKRDANLTIKIKTPFRALFEKELRRYLGS SSYVINTSLGIMILCFVSCGCIIFGISNIENLLGISSLEPILTQYGSLFIASFLIMSCTT SSSISLEGNNLWILQSSPVSTRKIINSKIAVNVLIHFVGYVLAVMMILLKTKLNLLQMSF VLIVPICYSLFISVVGLYLNMRYMKLKWNDEISVVKHSTAAILTNLIAILMIAVPVIMMI FLHLSYQVTMLIICTLMLIVCQKLYRVSLSINFCK >gi|281297368|gb|ADDO01000055.1| GENE 54 53195 - 53443 178 82 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282882750|ref|ZP_06291357.1| ## NR: gi|282882750|ref|ZP_06291357.1| hypothetical protein HMPREF0628_1137 [Peptoniphilus lacrimalis 315-B] hypothetical protein HMPREF0628_1137 [Peptoniphilus lacrimalis 315-B] # 1 82 10 91 91 147 98.0 4e-34 MKNLTFNRQITIGIICMFLGFIISSVTDVKWFSNIGACLFGLFFVLNPVEPENYKGYSNL KIWIRMTGILIMVLGAITHFNW >gi|281297368|gb|ADDO01000055.1| GENE 55 53559 - 53888 412 109 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282882727|ref|ZP_06291334.1| ## NR: gi|282882727|ref|ZP_06291334.1| conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] # 1 109 1 109 109 113 100.0 6e-24 MKKEKTLQEVQIEIAELEEEKESYEIQLRQLKNREKMLVKLANQKERTRRNHRLIQRGLI VEKVIKNPLMFTNEDIEKLLNISTHTEEYRQAYEEMINGKDMEDETDIE >gi|281297368|gb|ADDO01000055.1| GENE 56 54135 - 55787 1414 550 aa, chain + ## HITS:1 COG:AGpT237 KEGG:ns NR:ns ## COG: AGpT237 COG0507 # Protein_GI_number: 16119945 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 6 263 22 284 1117 159 36.0 1e-38 MAETFHFNISMISRGKSKSAVASAAYISCEKIKNEWDGEVHDYHNKKGLLHSEIFLPENV PIALKDRTTLWNSVELNEKASNAQLARNFIIALPKELSFEENKKLITDFIQENFVSKGMM ADLAIHDESDEENNNIHAHIMTTLRPINEKGEWQAKSKKEYVLDENGEKIKLKSGNYKTR KIELTDWNDKGNAEKWRENFASLCNQYLEKNHQEKRVDHRSYKRQGIEEIPTIHLGASAS ALEKKGIETDKGNINREIKKHNSLVKAIKNKIKEITSWIDSLLGNLQAKYDEYKQTKKDE LENKAELFNLYEYISIYNEIQGEKIKNLSYYGQIKKGNADLKRFVKAIYYLKDNHLQTIA DLQEKVIELAKQSKKISGDIQSKTQRIKDLNQCVRCIDSIKENKEVYQEYKSKTIFKDSF YNSHKKEIDRYLRARKTIEKFTGTSAIKSSVWQKEILILEKEIQNLTEDKAKVQDEFKQI DHIKYAVKIVNDEYGIDLIIEIDKAIKRGDKPSVIAQLKKFQEQEERKGQYKQKAKEKAK ENYKNKGEER >gi|281297368|gb|ADDO01000055.1| GENE 57 55790 - 56542 423 250 aa, chain + ## HITS:1 COG:no KEGG:HMPREF0837_11437 NR:ns ## KEGG: HMPREF0837_11437 # Name: not_defined # Def: phage-associated protein # Organism: S.pneumoniae_TCH8431-19A # Pathway: not_defined # 1 250 1 240 240 245 62.0 1e-63 MADNRRYYWLKLKEDFFTDKRIKRLRKISGGDTYTIIYLKLLLLSLKDSGKLYYDGVETD FIKELALTIDETEDDVMVTVNYLVAQGLMEIITENDEYFLTEIPSLIGSETASTRRSRKS RGQKALQCNTGATPCNLLQQNCNGEIEIEKEIDIELEKEGEKEKISPSLYGEYKNVSLTD EEYGKLKDKMQGHRDKMIEKLSTYMQSTGRNYKDHYATLVHWYEQDKGKLKESSKSKVYT FEDYDKGEHL >gi|281297368|gb|ADDO01000055.1| GENE 58 56827 - 57000 200 57 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKDMVSRYQKGGTLKKVSHYLYPKGEALKAAERIKPLCFFRRTYDRSVKVWILYRRS >gi|281297368|gb|ADDO01000055.1| GENE 59 56957 - 57523 517 188 aa, chain + ## HITS:1 COG:no KEGG:BcerKBAB4_5408 NR:ns ## KEGG: BcerKBAB4_5408 # Name: not_defined # Def: hypothetical protein # Organism: B.weihenstephanensis # Pathway: not_defined # 9 184 9 171 190 63 25.0 5e-09 MIEALKYGFYTVDPDYLEYLNKVDSEVYYNPSYRNSTKPFIGVIVGIENYNYFIPVSSAK EKHKRWKNVSDEHFIIYEVIDNSISIQGDIYKYYSDTEKMHILSILDIKKMIPVPTGYYE QVVFDELDDDRYKDLFEKEYAFCLSIKDKVLNKVQKIYNNQKETGIVRRANCNFEKLEDA MSKWNSTK >gi|281297368|gb|ADDO01000055.1| GENE 60 57607 - 57792 330 61 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282882766|ref|ZP_06291373.1| ## NR: gi|282882766|ref|ZP_06291373.1| conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] # 1 61 1 61 61 69 100.0 8e-11 MHENKNEQNTGIKTIKKIGKATYEVVVRFNKNATETMQDKLKRIILREMEREKHQKAIKN D >gi|281297368|gb|ADDO01000055.1| GENE 61 57894 - 58619 903 241 aa, chain + ## HITS:1 COG:CAC1969 KEGG:ns NR:ns ## COG: CAC1969 COG3505 # Protein_GI_number: 15895240 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type IV secretory pathway, VirD4 components # Organism: Clostridium acetobutylicum # 2 207 354 562 591 107 36.0 2e-23 MSEDELELDKIGDRKTALFVIISDTDDTFNFVVSIMYSQLFNLLCDKADDVYGGRLPVHV RCLLDEFANIGLIPKFEKLIATIRSREISASIILQAQSQLKAIYKDHADTIVGNCDSTLF LGGKEKTTVKELSETLGKETIDLYNTSETRSNQKSFGLNYQKTGKELMSQDEITVMDGGK CIYQLRGVRPFLSDKFDITKHKNYKLLEDYDKKNLFDVEEYLTNRDKVKLKSSYKINRLN I >gi|281297368|gb|ADDO01000055.1| GENE 62 58638 - 58913 366 91 aa, chain + ## HITS:1 COG:no KEGG:Apre_1806 NR:ns ## KEGG: Apre_1806 # Name: not_defined # Def: hypothetical protein # Organism: A.prevotii # Pathway: not_defined # 1 90 1 90 91 143 94.0 2e-33 MCENRKSSLIILNINGEQFILESDTELTMDKKNYIEAICETMYDESNEWYDDIYDMSPYD IAKLFEKTVKEEVGITVTFKAIDLEVSILED >gi|281297368|gb|ADDO01000055.1| GENE 63 59024 - 59641 523 205 aa, chain + ## HITS:1 COG:no KEGG:Ccur_08110 NR:ns ## KEGG: Ccur_08110 # Name: not_defined # Def: hypothetical protein # Organism: C.curtum # Pathway: not_defined # 1 205 1 205 205 333 87.0 4e-90 MIESRPEFDKITSFDEFNKYYWYREELSQICKSLGLEYRGTKQELNYIIEQYFKGDLIKK SSIKNEKKQVETITLDTPLLECGFSFNTHFREYFSILTDVSPFKFTADMATAWRKVKREN DLSFTIQDMLKVYYGKSDYAKYDNSVCQWNQFLKDFCADEISCNYSNKIQVAAILWKEVR DSKNKKVYSRELIKKYEDKIKDYHK >gi|281297368|gb|ADDO01000055.1| GENE 64 59864 - 60175 529 103 aa, chain + ## HITS:1 COG:no KEGG:HMPREF9243_0143 NR:ns ## KEGG: HMPREF9243_0143 # Name: not_defined # Def: hypothetical protein # Organism: A.urinae # Pathway: not_defined # 1 103 1 103 103 137 91.0 2e-31 MDREMININANLVKEADFSEFEKDGENVQVANFTLVKKYGKGKEYTNCSVYGEKVEIVKE FEKGDLIHVFGYFKENKKGDKVYKNFIVKSLNKIENKKVNEEE >gi|281297368|gb|ADDO01000055.1| GENE 65 60177 - 60335 376 52 aa, chain + ## HITS:1 COG:no KEGG:Apre_1811 NR:ns ## KEGG: Apre_1811 # Name: not_defined # Def: hypothetical protein # Organism: A.prevotii # Pathway: not_defined # 1 51 1 51 71 80 98.0 2e-14 MEFFTAGVGVLKTLVTAIGAGLGAWGVINLMEGYGNDNPGAKSQGIKQFMAK >gi|281297368|gb|ADDO01000055.1| GENE 66 60453 - 60671 316 72 aa, chain + ## HITS:1 COG:SP1030 KEGG:ns NR:ns ## COG: SP1030 COG3655 # Protein_GI_number: 15900901 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Streptococcus pneumoniae TIGR4 # 1 72 1 72 72 136 97.0 1e-32 MALNYKPLWIQLAKKGLKKTDVIAMAGLTTNVMAQMGKDKPITFKNLERICKALSCTPND IISFEDNFSEED >gi|281297368|gb|ADDO01000055.1| GENE 67 60675 - 61703 951 342 aa, chain + ## HITS:1 COG:no KEGG:ELI_2923 NR:ns ## KEGG: ELI_2923 # Name: not_defined # Def: hypothetical protein # Organism: E.limosum # Pathway: not_defined # 5 307 6 306 600 372 59.0 1e-101 MSLRTEDQVRDYAKLVLGFDEAEENVDQGTGQITTFNQLGFKGYSDKPDGWYLPKNMNDV AIILETKSEERDISKQIFIDELMKNIDIISSKYKKTVGILYNGKEIAIYKNKELIRVANK LQHKQYYIDLFKENYIDKNKIFTLTKRINDLLHFKFGIKNLYHRMIFTASALVVERFGGN LEAIKDNGYEPFRNKIYDTLAKSLQDHRKQNLKIDILLEVYSEIKMNIVENQDDINTFID CIIEIAESINSDNWNGEDVMGIFFNEFNRYKKKSESGQVFTPEHITSFMYDLLEITYNDR LLDATCGFRVIIVIEANSYVNIKSSRLLPKFKTQKINSWCAA >gi|281297368|gb|ADDO01000055.1| GENE 68 61916 - 62179 232 87 aa, chain + ## HITS:1 COG:BH0335 KEGG:ns NR:ns ## COG: BH0335 COG2801 # Protein_GI_number: 15612898 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Bacillus halodurans # 4 87 15 98 261 92 57.0 1e-19 MNKEKDVKLDEDEKLIEEIKEIFRRSRNNYGTRKIKKELGKIGYKISRRKIGRIMKKNGL ISNYTVAQYKVIRSKCNEEDIPNLLNR >gi|281297368|gb|ADDO01000055.1| GENE 69 62516 - 62665 61 49 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|313888449|ref|ZP_07822116.1| ## NR: gi|313888449|ref|ZP_07822116.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus harei ACS-146-V-Sch2b] 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus harei ACS-146-V-Sch2b] # 1 49 494 542 542 103 100.0 6e-21 MKTEFIYQENFTNFQELNLKLAEYVYWYNNLRIHGSLGYKTPVEYRKAE >gi|281297368|gb|ADDO01000055.1| GENE 70 62847 - 62951 91 34 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MYLGSLEECRAMGNMTLMCLYTKKLHVRWLTTGS >gi|281297368|gb|ADDO01000055.1| GENE 71 63064 - 63543 568 159 aa, chain + ## HITS:1 COG:AF0346 KEGG:ns NR:ns ## COG: AF0346 COG2608 # Protein_GI_number: 11497958 # Func_class: P Inorganic ion transport and metabolism # Function: Copper chaperone # Organism: Archaeoglobus fulgidus # 23 145 4 120 204 75 38.0 3e-14 MKINNECCCGCKTEKPDQIKDNCPVCNNEGISVSKVTVEHLVVDDYRNAVNGDQYKICMN EDCDVVYYNLDNEIKFLKDQVRVPIWFKKDADPKYACYCSEVTENQVIEAVVKHGAKSVK EVNAITGAMKNSNCKENNPLGVCCHKIIQEAIDKGLKMK >gi|281297368|gb|ADDO01000055.1| GENE 72 63941 - 64072 71 43 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MYMYCSSRYYFISFIMKKIKGGKGMGMFSIFVNERFHYQPNQK >gi|281297368|gb|ADDO01000055.1| GENE 73 64130 - 64861 568 243 aa, chain + ## HITS:1 COG:SA0048 KEGG:ns NR:ns ## COG: SA0048 COG0030 # Protein_GI_number: 15925755 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Dimethyladenosine transferase (rRNA methylation) # Organism: Staphylococcus aureus N315 # 1 243 1 243 243 363 81.0 1e-100 MKQKNPKNTQNFITSKKHVKEILKYTNINKQDKIIEIGSGKGHFTKELVEMSQRVNAIEI DEGLCHATKKAVEPFQNIKVIHEDILKFSFPKNTDYKIFGNIPYNISTDIVKKIAFDSQA KYSYLIVERGFAKRLQNTQRALGLLLMVEMDIKILKKVPRAYFHPKPNVDSVLIVLERHK PFILKKDYKKYRFFVYKWVNREYHVLFTKNQLRQVLKHANVTDLDKLSNEQFLSVFNSYK LFQ >gi|281297368|gb|ADDO01000055.1| GENE 74 65100 - 65189 71 29 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MPQASILSPWEDWRILYAILVLAVSEMAS >gi|281297368|gb|ADDO01000055.1| GENE 75 65162 - 65602 275 146 aa, chain + ## HITS:1 COG:no KEGG:SPAP_0897 NR:ns ## KEGG: SPAP_0897 # Name: not_defined # Def: hypothetical protein # Organism: S.pneumoniae_AP200 # Pathway: not_defined # 1 146 29 174 174 276 100.0 3e-73 MDLKCLLGAHIKPLEQSIDRVEGLSEILRRSNPKMALCHTDIHNWNLMQRDEQLVLIDWE GLKLAPVKADLMFFVDKPYYDVFMNIYLKLHKDFLINTDALLFYHIRRKLEDIWEFIEQL LYDNQEDKERNETIKVLDGELNNLVF >gi|281297368|gb|ADDO01000055.1| GENE 76 65648 - 66037 400 129 aa, chain + ## HITS:1 COG:SP1029 KEGG:ns NR:ns ## COG: SP1029 COG2265 # Protein_GI_number: 15900900 # Func_class: J Translation, ribosomal structure and biogenesis # Function: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 5 129 418 543 543 112 50.0 2e-25 MNKQELYQIAFSIINHKKLRNFGTSGHVETVALLSKLNTEHHLDIEIGEDELSEIDFSKD ATYGEIKKYVLDKYVLKVSSLYIAQIKRKHGLIERENYNFSKKENQRVPNCPEEKEKAIE DALEHFGMI >gi|281297368|gb|ADDO01000055.1| GENE 77 66248 - 67144 917 298 aa, chain + ## HITS:1 COG:no KEGG:ELI_2923 NR:ns ## KEGG: ELI_2923 # Name: not_defined # Def: hypothetical protein # Organism: E.limosum # Pathway: not_defined # 3 293 300 596 600 350 59.0 5e-95 MKILDHCAGSGAFLVKAMANMIKEVGGVNTKEAEDIKQNKLYGIEFDREIFALACANMLI HKDGKTNLEQFDTREKEACKWIKSKNITKVLMNPPYERKYGCKKIVTNVLDNVPAGIKCA FILPDKKLEKDRMHSLLKKHTLDMIIKLPEKLFDAGVTTSVFVFETGKPQKDKKIFACYM EDDGLERVKNQGRHDIKNKWKEIEKYWLEVARTKVDTKYNTHQWIDSKEYLSYQKPQKPF EIYEEDFKKTIIDFILFEEKIDVKEFNEKLLNQVLYKSEYKDGKLMLDVGGENEENKD >gi|281297368|gb|ADDO01000055.1| GENE 78 67125 - 67646 538 173 aa, chain + ## HITS:1 COG:no KEGG:ATP_00026 NR:ns ## KEGG: ATP_00026 # Name: not_defined # Def: N-6 DNA methylase # Organism: Phytoplasma_mali # Pathway: not_defined # 4 162 629 781 785 80 35.0 3e-14 MKKIKIDDWKPFEIEKLFTVKRPKSRSVKKYNEGEIPFVSSGNYNNGVDSYREPIDDEDL DKGNCITVSPVDGSTFYQPKDFLGRGGGGSSIMLLYNDNLNKFNGLFIASVIRESLKIKY QYNDMGSSDSIKKENILLPALDDETPDWNFMEEAMKRLETREREYKQSYKLFK >gi|281297368|gb|ADDO01000055.1| GENE 79 67597 - 68157 532 186 aa, chain + ## HITS:1 COG:no KEGG:MCJ_005510 NR:ns ## KEGG: MCJ_005510 # Name: not_defined # Def: hypothetical protein # Organism: M.conjunctivae # Pathway: not_defined # 22 175 609 763 777 84 33.0 2e-15 MKPERESTSNLTSYLNNAKLNKVDTSKWKEFIVGDLFENIKKPDVLHAREVVEDENGIPY VVRTKFNNGIKYRVTETKKMTPSPKGVISFGAENASFFYQKENFVSGRDIYYIDTRHLSE KACLFLVSCLDTLTDKYSYSYGLFPDLLKKEKIKLPVDVHGNPDWDYMEKYIEKIKENCN REIHCV >gi|281297368|gb|ADDO01000055.1| GENE 80 68218 - 68532 344 104 aa, chain + ## HITS:1 COG:no KEGG:HMPREF0837_11443 NR:ns ## KEGG: HMPREF0837_11443 # Name: not_defined # Def: hypothetical protein # Organism: S.pneumoniae_TCH8431-19A # Pathway: not_defined # 1 104 2 105 105 90 91.0 2e-17 MTSKRLSIEEQIEKKEESIKQLQNQKRQLKKKLNEQERKARNKRLIEKGAVLESIFEESI GLTKDEFYKLMKSLNGEEIRLNIMGILEERIDDSVEKSSKEEIT >gi|281297368|gb|ADDO01000055.1| GENE 81 68674 - 68862 112 62 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKTVCHFYHFLSFFVVLGGGLIDFYIHFVNERFEMIELKKPTTELIFVVSVCRLNCFVHF KF >gi|281297368|gb|ADDO01000055.1| GENE 82 68845 - 70485 1582 546 aa, chain + ## HITS:1 COG:AGpT237 KEGG:ns NR:ns ## COG: AGpT237 COG0507 # Protein_GI_number: 16119945 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 6 246 22 261 1117 150 37.0 8e-36 MADSFHFSVNIISRGKGKSAVASAAYISGEKIKNEWDGVTHDYTRKEKVLVKNIILPDHI PKEFNDRSTLWNKVEMAEKNSNAQLARQFIIGLPKELSLSENINLVERYIKENLTSQGMI VDYAIHDESQDKNGNIHCHIMTIMRPINEKGEFLAKSKKEYILDEKGEKVLNKNGKPKTR KVELTSWNDKGNVEKWRENFSDLCNEYLAKNKIEKRVDHRSFKRQNSDYLPTIHLGSAAS AMERKGIETDKGNYNREIRKYNELVKTIKEEIKTLKGWIGNLLDNLTTAYEKFKDIERDK VIDNPKLFNLTNYLLTYSEIQKEKSKYLKGYAKTNKEKYDFKKLTSAYSYLRKNNIETIG QLQTKIESLKSNSYKLNKKAKTIHKEMEDVEKKILYYEIYKAKKGVYEEYQKKNIFTKDI FYNKHKKDIDQYKVVSEKLKKLLSDKEKLSLKKWNEEKSLLMANLEEINKEKDKIKDEYQ EINHIKYSVDFVNKELGIDLSIEIDKLIKQGEKPSVIAQIKKYQEQREKYEKKKERTKDS YRNSER >gi|281297368|gb|ADDO01000055.1| GENE 83 70562 - 72064 1467 500 aa, chain + ## HITS:1 COG:no KEGG:CLJU_c17450 NR:ns ## KEGG: CLJU_c17450 # Name: not_defined # Def: hypothetical protein # Organism: C.ljungdahlii # Pathway: not_defined # 13 500 13 494 497 226 33.0 2e-57 MHINGGTDVKKKLKPLVDYIILVLYSICMYILWKLCKLGGTHYWLRIMLPFVILLIILLL VRLILRHRGYRASYFKFRLVLFIAISLVFGGMIIHTAIPYNGALSWKIDDFLNHKKIKFI HNNIYENGIDGLINDIGEKNSLPEKIYVSDDFYIEFTEDGTITNIETMLYGENDKGQLKG FLITYDYKKDSKINIWLNEGEGLSINSDKLLNPFFAILKQSDYRKQVHNWENIKQNQTYS FLYSGKEKVNSEKGLSILDGDADGDGKYNTGLAPSKLSSGGEFSGYMASLYIKNNEDISS FKYLMEPQYISPEILENEHNSEILEDAKSSKRWITDENNGTVYTFVLDDKKIGYRLVVVD AAAGSRFYAFEKSIDSGENWKVINKDPFMDETGSAEGIIFFSNDFGFIGIQGASGQYSQI YSTKDGGLTFRQVNLPMDKVKDIPKEGKEIGLKLDDYKYLSMPESKGNKLYITVTSGEYE SNGIQFYSEDAGESWNVLSK >gi|281297368|gb|ADDO01000055.1| GENE 84 72141 - 72512 275 123 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282882773|ref|ZP_06291380.1| ## NR: gi|282882773|ref|ZP_06291380.1| putative DNA gyrase subunit beta [Peptoniphilus lacrimalis 315-B] putative DNA gyrase subunit beta [Peptoniphilus lacrimalis 315-B] # 1 99 1 99 123 166 100.0 5e-40 MIDGYTALLVLGDLITTTTTIEVINQSEDIVAKVKEHFNINYEITKIQYSLGFPDGYGLE IYDSRVVKEHFFEDDGFEDSEIDTYFQKLNIDTPKYLKVLIIENILGIILIIVIIRRNRI NEQ >gi|281297368|gb|ADDO01000055.1| GENE 85 72767 - 73294 764 175 aa, chain + ## HITS:1 COG:no KEGG:SPG_0962 NR:ns ## KEGG: SPG_0962 # Name: not_defined # Def: hypothetical protein # Organism: S.pneumoniae_G54 # Pathway: not_defined # 1 175 1 175 175 172 96.0 7e-42 MINEEISKEAGQAAQTIITYTIKAAKESINLDKEIRKKMNETLEKANGNLKSLMGDEMKI KDLYKKGQLENISIDQSGLKDLKKELNKLGVSFSVMKNKESKNYEIFFQAKDIKVMEYAF KQVIAKENKKEKESILKQIKKYKDLSKNKDKTKEKVKRKVKEKVKPSKKDMTREI >gi|281297368|gb|ADDO01000055.1| GENE 86 73497 - 73904 262 135 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167855185|ref|ZP_02477956.1| 50S ribosomal protein L31 [Haemophilus parasuis 29755] # 7 128 1 125 339 105 40 7e-22 MNKNNKIDRVHDDVFNSIKTLMDKARNEVAREVNNILVQTYWEIGRIIVEDEQGHSERAE YGKELINDLSRQLTKEYGKGFSKSNLFNMRNLYLSYPIFQTLSGKLTWSHYCELLSISDE KKRSFYEKGRFNDEI >gi|281297368|gb|ADDO01000055.1| GENE 87 73894 - 74808 533 304 aa, chain + ## HITS:1 COG:no KEGG:SPCG_0169 NR:ns ## KEGG: SPCG_0169 # Name: not_defined # Def: hypothetical protein # Organism: S.pneumoniae_CGSP14 # Pathway: not_defined # 1 304 8 311 311 558 100.0 1e-157 MKFRKNQNKEKQIPKEKKPRVYYKVNPHKKVVIALWVLLGLSFSFAIFKHFTAIDTHTIH ETTIIEKEYVDTHHVENFVENFAKVYYSWEQSDKSIDNRMESLKGYLTDELQALNVDTVR KDIPVSSSVRGFQIWTVEPTGDNEFNVTYSVDQLITEGENTKTVHSAYIVSVYVDGSGNM VLVKNPTITNIPKKSSYKPKAIESEGTVDSITTNEINEFLTTFFKLYPTATASELSYYVN DGILKPIGKEYIFQELVNPIHNRKDNQVTVSLTVEYIDQQTKATQVSQFDLVLEKNGSNW KIIE Prediction of potential genes in microbial genomes Time: Mon Jul 18 12:41:11 2011 Seq name: gi|281297366|gb|ADDO01000056.1| Peptoniphilus lacrimalis 315-B contig00046, whole genome shotgun sequence Length of sequence - 770 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 769 859 ## PROTEIN SUPPORTED gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 Predicted protein(s) >gi|281297366|gb|ADDO01000056.1| GENE 1 2 - 769 859 256 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 [marine gamma proteobacterium HTCC2080] # 1 256 123 389 407 335 63 6e-93 ARQVGVPKIVVFLNKEDQVDDPELIELVEMEVRDLLSEYDFDGDNTPIVVGSALKALEDP DGEWGDKIIKLMEAVDEYIPTPARDVDHPFLMPVEDIFSITGRGTVATGRVERGTVKVGD TVEIVGLTNEKRSVVVTGVEMFKKQLDQAEAGDNIGALLRGVQRNEIERGQVLAAPNSIH PHTKFEAEVYVLTKEEGGRHTPFFNGYRPQFYFRTTDVTGDIQLPEGTEMVMPGDNATFT VTLITPIAMDEGLRFA Prediction of potential genes in microbial genomes Time: Mon Jul 18 12:42:03 2011 Seq name: gi|281297200|gb|ADDO01000057.1| Peptoniphilus lacrimalis 315-B contig00023, whole genome shotgun sequence Length of sequence - 177891 bp Number of predicted genes - 169, with homology - 164 Number of transcription units - 68, operones - 40 average op.length - 3.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 3 - 408 524 ## 2 1 Op 2 . - CDS 302 - 12937 16458 ## FMG_0049 putative N-acetylmuramoyl-L-alanine amidase - Prom 13011 - 13070 11.8 - Term 13167 - 13208 4.1 3 2 Op 1 . - CDS 13250 - 14560 1151 ## COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase 4 2 Op 2 . - CDS 14547 - 15008 545 ## COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains - Prom 15062 - 15121 5.5 - Term 15074 - 15110 4.0 5 3 Op 1 . - CDS 15129 - 16211 1715 ## COG0206 Cell division GTPase - Prom 16269 - 16328 6.7 6 3 Op 2 . - CDS 16376 - 17134 893 ## gi|282882863|ref|ZP_06291468.1| FtsQ-type POTRA domain protein - Prom 17154 - 17213 12.3 - Term 17158 - 17193 -1.0 7 4 Op 1 31/0.000 - CDS 17253 - 18335 1246 ## COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase 8 4 Op 2 25/0.000 - CDS 18335 - 19459 1059 ## COG0772 Bacterial cell division membrane protein 9 4 Op 3 28/0.000 - CDS 19462 - 20778 1360 ## COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase 10 4 Op 4 4/0.000 - CDS 20782 - 21735 587 ## COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase 11 4 Op 5 . - CDS 21737 - 24154 2998 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 12 4 Op 6 . - CDS 24164 - 24583 431 ## gi|282882805|ref|ZP_06291410.1| putative cell division protein FtsL 13 4 Op 7 29/0.000 - CDS 24561 - 25523 913 ## COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis 14 4 Op 8 . - CDS 25523 - 25951 502 ## COG2001 Uncharacterized protein conserved in bacteria - Prom 26115 - 26174 10.3 - Term 26122 - 26158 5.0 15 5 Op 1 40/0.000 - CDS 26193 - 27641 1346 ## COG0642 Signal transduction histidine kinase 16 5 Op 2 . - CDS 27625 - 28296 911 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 28327 - 28386 6.5 17 6 Op 1 . - CDS 28398 - 30560 2160 ## Swol_1370 hypothetical protein 18 6 Op 2 . - CDS 30541 - 31143 326 ## gi|282882921|ref|ZP_06291526.1| hypothetical protein HMPREF0628_0441 - Prom 31163 - 31222 1.6 - Term 31211 - 31237 -0.6 19 7 Op 1 21/0.000 - CDS 31246 - 32673 1338 ## COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) 20 7 Op 2 . - CDS 32670 - 34112 1686 ## COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases 21 7 Op 3 . - CDS 34119 - 34400 355 ## gi|282882797|ref|ZP_06291402.1| glutamyl-tRNA(Gln) amidotransferase, C subunit 22 7 Op 4 5/0.000 - CDS 34393 - 36387 1896 ## COG0272 NAD-dependent DNA ligase (contains BRCT domain type II) 23 7 Op 5 . - CDS 36387 - 38549 2467 ## COG0210 Superfamily I DNA and RNA helicases 24 7 Op 6 . - CDS 38549 - 39235 868 ## COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 25 7 Op 7 . - CDS 39245 - 40294 1116 ## CLOST_0461 exported protein of unknown function - Prom 40324 - 40383 11.7 - Term 40407 - 40467 6.1 26 8 Tu 1 . - CDS 40494 - 42485 2172 ## Daud_2116 S-layer domain-containing protein - Prom 42506 - 42565 17.5 + Prom 42519 - 42578 10.1 27 9 Op 1 . + CDS 42634 - 43395 1050 ## Kkor_0729 uroporphyrin-III C-methyltransferase 28 9 Op 2 . + CDS 43406 - 43687 395 ## Vpar_1838 hypothetical protein + Term 43737 - 43777 6.1 - Term 43773 - 43811 4.1 29 10 Op 1 . - CDS 43875 - 44099 188 ## gi|300813301|ref|ZP_07093656.1| conserved domain protein - Term 44122 - 44163 8.1 30 10 Op 2 . - CDS 44171 - 46540 3106 ## COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase - Prom 46582 - 46641 8.2 - Term 46615 - 46643 -0.1 31 11 Op 1 . - CDS 46648 - 47181 683 ## COG1437 Adenylate cyclase, class 2 (thermophilic) 32 11 Op 2 . - CDS 47166 - 47858 700 ## COG1768 Predicted phosphohydrolase 33 11 Op 3 . - CDS 47861 - 50122 1916 ## FMG_0702 putative DNA double-strand break repair rad50 ATPase 34 11 Op 4 . - CDS 50109 - 51146 862 ## COG0420 DNA repair exonuclease - Prom 51233 - 51292 6.8 35 12 Op 1 . - CDS 51369 - 51920 620 ## COG1335 Amidases related to nicotinamidase 36 12 Op 2 . - CDS 51929 - 52831 919 ## COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) 37 12 Op 3 . - CDS 52842 - 54527 1930 ## COG1109 Phosphomannomutase 38 12 Op 4 . - CDS 54524 - 55000 479 ## COG2606 Uncharacterized conserved protein - Prom 55052 - 55111 6.7 39 13 Op 1 42/0.000 - CDS 55148 - 55942 681 ## COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components 40 13 Op 2 25/0.000 - CDS 55942 - 56601 265 ## PROTEIN SUPPORTED gi|225084369|ref|YP_002657150.1| ribosomal protein S16 41 13 Op 3 . - CDS 56598 - 57713 1252 ## COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin - Prom 57802 - 57861 10.3 + Prom 57764 - 57823 14.7 42 14 Tu 1 . + CDS 57844 - 58269 386 ## COG0735 Fe2+/Zn2+ uptake regulation proteins - Term 58447 - 58492 -0.6 43 15 Op 1 . - CDS 58648 - 59394 589 ## COG0863 DNA modification methylase 44 15 Op 2 . - CDS 59394 - 60275 796 ## Selsp_0626 Type II site-specific deoxyribonuclease (EC:3.1.21.4) 45 15 Op 3 . - CDS 60299 - 61288 871 ## COG0338 Site-specific DNA methylase - Prom 61482 - 61541 7.5 46 16 Tu 1 . + CDS 61639 - 62016 443 ## BcerKBAB4_2984 MaoC family protein + Term 62161 - 62202 -1.0 - Term 62045 - 62090 4.4 47 17 Tu 1 . - CDS 62130 - 64085 1181 ## PROTEIN SUPPORTED gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 - Prom 64111 - 64170 11.4 48 18 Op 1 23/0.000 - CDS 64172 - 64777 625 ## COG0353 Recombinational DNA repair protein (RecF pathway) 49 18 Op 2 30/0.000 - CDS 64781 - 65122 197 ## PROTEIN SUPPORTED gi|149916415|ref|ZP_01904934.1| 30S ribosomal protein S21 50 18 Op 3 . - CDS 65131 - 66864 1907 ## COG2812 DNA polymerase III, gamma/tau subunits - Prom 66973 - 67032 5.6 + Prom 66737 - 66796 7.6 51 19 Tu 1 . + CDS 67004 - 67300 580 ## gi|282882936|ref|ZP_06291541.1| lipoprotein + Term 67315 - 67344 2.1 + Prom 67347 - 67406 7.4 52 20 Tu 1 . + CDS 67427 - 69022 1208 ## gi|282882816|ref|ZP_06291421.1| conserved hypothetical protein + Term 69041 - 69089 11.0 - Term 69029 - 69076 11.6 53 21 Tu 1 . - CDS 69081 - 69821 552 ## CPR_0812 hypothetical protein - Prom 69869 - 69928 3.9 - Term 69901 - 69927 1.0 54 22 Op 1 . - CDS 69947 - 71017 1220 ## COG3243 Poly(3-hydroxyalkanoate) synthetase 55 22 Op 2 . - CDS 71029 - 72072 837 ## Apre_0113 hypothetical protein - Prom 72092 - 72151 11.3 - Term 72230 - 72263 4.0 56 23 Op 1 . - CDS 72277 - 73395 1726 ## COG1744 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein - Prom 73452 - 73511 12.2 - Term 73482 - 73513 1.8 57 23 Op 2 . - CDS 73531 - 74547 942 ## gi|282882846|ref|ZP_06291451.1| hypothetical protein HMPREF0628_0480 - Prom 74618 - 74677 11.4 - Term 74696 - 74733 4.1 58 24 Op 1 25/0.000 - CDS 74757 - 75794 1151 ## COG0687 Spermidine/putrescine-binding periplasmic protein 59 24 Op 2 36/0.000 - CDS 75791 - 76573 688 ## COG1177 ABC-type spermidine/putrescine transport system, permease component II 60 24 Op 3 30/0.000 - CDS 76557 - 77402 637 ## COG1176 ABC-type spermidine/putrescine transport system, permease component I 61 24 Op 4 4/0.000 - CDS 77411 - 78448 1124 ## COG3842 ABC-type spermidine/putrescine transport systems, ATPase components 62 24 Op 5 . - CDS 78458 - 78997 521 ## COG1396 Predicted transcriptional regulators - Prom 79039 - 79098 7.4 + Prom 79064 - 79123 10.3 63 25 Tu 1 . + CDS 79157 - 79852 276 ## COG3503 Predicted membrane protein - Term 79789 - 79831 1.3 64 26 Op 1 8/0.000 - CDS 79853 - 80662 1058 ## COG1512 Beta-propeller domains of methanol dehydrogenase type 65 26 Op 2 . - CDS 80671 - 81231 869 ## COG1704 Uncharacterized conserved protein 66 26 Op 3 7/0.000 - CDS 81218 - 82402 1501 ## COG0301 Thiamine biosynthesis ATP pyrophosphatase 67 26 Op 4 . - CDS 82407 - 83555 1080 ## COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes 68 26 Op 5 . - CDS 83571 - 84164 472 ## CLOST_1446 hypothetical protein - Prom 84202 - 84261 4.2 + Prom 84159 - 84218 10.1 69 27 Tu 1 . + CDS 84264 - 85163 699 ## gi|282882795|ref|ZP_06291400.1| conserved hypothetical protein + Term 85195 - 85230 5.3 - Term 85014 - 85077 -1.0 70 28 Tu 1 . - CDS 85205 - 85429 358 ## gi|282882874|ref|ZP_06291479.1| hypothetical protein HMPREF0628_0493 - Prom 85548 - 85607 8.2 - Term 85756 - 85808 2.0 71 29 Op 1 . - CDS 85819 - 87162 1299 ## FN1854 methylaspartate mutase (EC:5.4.99.1) 72 29 Op 2 3/0.000 - CDS 87159 - 87785 820 ## COG3404 Methenyl tetrahydrofolate cyclohydrolase 73 29 Op 3 . - CDS 87794 - 89470 2392 ## COG2759 Formyltetrahydrofolate synthetase 74 29 Op 4 1/0.182 - CDS 89519 - 90412 1280 ## COG3643 Glutamate formiminotransferase 75 29 Op 5 . - CDS 90455 - 91996 2042 ## COG2986 Histidine ammonia-lyase 76 29 Op 6 . - CDS 92024 - 92497 417 ## gi|282882912|ref|ZP_06291517.1| hypothetical protein HMPREF0628_0499 77 29 Op 7 . - CDS 92545 - 94077 1776 ## COG1757 Na+/H+ antiporter - Prom 94262 - 94321 8.4 - Term 94636 - 94664 -1.0 78 30 Tu 1 . - CDS 94674 - 95939 1604 ## COG1228 Imidazolonepropionase and related amidohydrolases - Prom 96144 - 96203 13.2 + Prom 96129 - 96188 10.1 79 31 Tu 1 . + CDS 96210 - 98219 2605 ## COG2987 Urocanate hydratase + Term 98226 - 98278 12.6 + Prom 98277 - 98336 15.5 80 32 Op 1 2/0.091 + CDS 98372 - 99568 1571 ## COG1489 DNA-binding protein, stimulates sugar fermentation 81 32 Op 2 . + CDS 99573 - 100091 390 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - Term 100051 - 100087 0.2 82 33 Op 1 . - CDS 100088 - 101425 1103 ## COG2239 Mg/Co/Ni transporter MgtE (contains CBS domain) 83 33 Op 2 . - CDS 101433 - 103274 1358 ## COG0210 Superfamily I DNA and RNA helicases - Prom 103308 - 103367 2.6 + Prom 103295 - 103354 9.0 84 34 Tu 1 . + CDS 103375 - 104172 712 ## FMG_0648 hypothetical protein + Term 104208 - 104247 4.1 85 35 Tu 1 . - CDS 104173 - 104346 113 ## - Term 104354 - 104389 4.2 86 36 Op 1 12/0.000 - CDS 104405 - 105358 1434 ## COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB 87 36 Op 2 3/0.000 - CDS 105368 - 105946 744 ## COG4657 Predicted NADH:ubiquinone oxidoreductase, subunit RnfA 88 36 Op 3 13/0.000 - CDS 105946 - 106545 630 ## COG4660 Predicted NADH:ubiquinone oxidoreductase, subunit RnfE 89 36 Op 4 12/0.000 - CDS 106555 - 107142 889 ## COG4659 Predicted NADH:ubiquinone oxidoreductase, subunit RnfG 90 36 Op 5 12/0.000 - CDS 107143 - 108135 1100 ## COG4658 Predicted NADH:ubiquinone oxidoreductase, subunit RnfD 91 36 Op 6 . - CDS 108145 - 109485 1429 ## COG4656 Predicted NADH:ubiquinone oxidoreductase, subunit RnfC - Prom 109652 - 109711 8.3 92 37 Op 1 3/0.000 - CDS 109824 - 110444 805 ## COG0572 Uridine kinase 93 37 Op 2 4/0.000 - CDS 110434 - 111666 1439 ## COG0826 Collagenase and related proteases 94 37 Op 3 . - CDS 111659 - 112309 565 ## COG4122 Predicted O-methyltransferase - Prom 112336 - 112395 6.5 95 38 Op 1 1/0.182 - CDS 112427 - 114088 1954 ## COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily 96 38 Op 2 . - CDS 114072 - 114539 504 ## COG0735 Fe2+/Zn2+ uptake regulation proteins 97 38 Op 3 . - CDS 114548 - 114805 380 ## gi|282882940|ref|ZP_06291545.1| conserved hypothetical protein 98 38 Op 4 6/0.000 - CDS 114771 - 115214 486 ## COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) - Term 115244 - 115272 -0.9 99 38 Op 5 4/0.000 - CDS 115273 - 115530 324 ## COG4472 Uncharacterized protein conserved in bacteria 100 38 Op 6 . - CDS 115577 - 118201 2943 ## COG0013 Alanyl-tRNA synthetase - Prom 118238 - 118297 14.2 - Term 118344 - 118398 3.7 101 39 Op 1 . - CDS 118529 - 118921 348 ## COG1132 ABC-type multidrug transport system, ATPase and permease components 102 39 Op 2 . - CDS 118896 - 119021 177 ## gi|282882804|ref|ZP_06291409.1| conserved hypothetical protein 103 39 Op 3 . - CDS 119100 - 119210 95 ## 104 39 Op 4 . - CDS 119275 - 120390 520 ## COG1266 Predicted metal-dependent membrane protease 105 39 Op 5 . - CDS 120404 - 121945 1159 ## GTNG_0266 SpaB 106 39 Op 6 . - CDS 121946 - 123298 1059 ## Clocel_4257 lantibiotic dehydratase domain-containing protein - Prom 123446 - 123505 7.5 + Prom 124096 - 124155 6.5 107 40 Tu 1 . + CDS 124176 - 124721 715 ## GWCH70_0639 hypothetical protein + Term 124759 - 124808 11.1 108 41 Op 1 . - CDS 124860 - 125150 321 ## COG0607 Rhodanese-related sulfurtransferase - Term 125155 - 125186 3.1 109 41 Op 2 . - CDS 125188 - 125562 560 ## COG0251 Putative translation initiation inhibitor, yjgF family 110 41 Op 3 3/0.000 - CDS 125564 - 125932 561 ## COG0799 Uncharacterized homolog of plant Iojap protein 111 41 Op 4 3/0.000 - CDS 125946 - 126818 950 ## COG1316 Transcriptional regulator 112 41 Op 5 9/0.000 - CDS 126815 - 127381 760 ## COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism 113 41 Op 6 7/0.000 - CDS 127383 - 127985 521 ## COG1057 Nicotinic acid mononucleotide adenylyltransferase 114 41 Op 7 1/0.182 - CDS 127987 - 128280 209 ## PROTEIN SUPPORTED gi|212638657|ref|YP_002315177.1| Predicted RNA-binding protein containing KH domain, possibly ribosomal protein 115 41 Op 8 14/0.000 - CDS 128290 - 129555 1655 ## COG0536 Predicted GTPase - Prom 129576 - 129635 6.4 - Term 129627 - 129660 2.0 116 41 Op 9 . - CDS 129704 - 130000 332 ## PROTEIN SUPPORTED gi|28211678|ref|NP_782622.1| 50S ribosomal protein L27 117 41 Op 10 . - CDS 130002 - 130319 438 ## gi|282882950|ref|ZP_06291555.1| putative ribosomal protein 118 41 Op 11 . - CDS 130319 - 130624 335 ## PROTEIN SUPPORTED gi|227902335|ref|ZP_04020140.1| ribosomal protein L21 - Prom 130692 - 130751 13.2 + Prom 130614 - 130673 5.1 119 42 Tu 1 . + CDS 130782 - 131780 1135 ## COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog + Term 131786 - 131823 4.4 - Term 131773 - 131811 3.0 120 43 Tu 1 . - CDS 131832 - 133142 1575 ## COG1114 Branched-chain amino acid permeases - Prom 133184 - 133243 7.2 121 44 Op 1 17/0.000 - CDS 133245 - 133895 860 ## COG0569 K+ transport systems, NAD-binding component 122 44 Op 2 . - CDS 133899 - 135260 1133 ## COG0168 Trk-type K+ transport systems, membrane components - Prom 135319 - 135378 13.3 - Term 135393 - 135422 0.3 123 45 Tu 1 . - CDS 135443 - 135955 577 ## Amet_4324 hypothetical protein - Prom 135980 - 136039 1.9 + Prom 136038 - 136097 8.6 124 46 Tu 1 . + CDS 136137 - 137405 1424 ## COG0285 Folylpolyglutamate synthase - Term 137413 - 137446 1.1 125 47 Op 1 . - CDS 137543 - 138178 574 ## gi|282882827|ref|ZP_06291432.1| conserved hypothetical protein 126 47 Op 2 3/0.000 - CDS 138178 - 139086 1285 ## COG4864 Uncharacterized protein conserved in bacteria - Prom 139122 - 139181 3.7 127 47 Op 3 . - CDS 139184 - 140020 759 ## COG1030 Membrane-bound serine protease (ClpP class) - Prom 140043 - 140102 12.8 + Prom 140271 - 140330 8.3 128 48 Tu 1 . + CDS 140354 - 140812 636 ## EUBELI_20159 hypothetical protein + Term 140833 - 140863 1.2 - Term 140821 - 140851 1.2 129 49 Op 1 . - CDS 140852 - 141295 335 ## PROTEIN SUPPORTED gi|42519249|ref|NP_965179.1| 30S ribosomal protein S21 130 49 Op 2 . - CDS 141308 - 141487 249 ## PROTEIN SUPPORTED gi|169824471|ref|YP_001692082.1| 30S ribosomal protein S21 - Prom 141528 - 141587 8.8 - Term 141547 - 141598 2.1 131 50 Tu 1 . - CDS 141606 - 143012 889 ## PROTEIN SUPPORTED gi|145629959|ref|ZP_01785741.1| 50S ribosomal protein L21 - Prom 143033 - 143092 8.6 - Term 143029 - 143064 4.4 132 51 Op 1 16/0.000 - CDS 143097 - 143723 823 ## COG1394 Archaeal/vacuolar-type H+-ATPase subunit D 133 51 Op 2 16/0.000 - CDS 143713 - 145101 1449 ## COG1156 Archaeal/vacuolar-type H+-ATPase subunit B 134 51 Op 3 . - CDS 145098 - 146870 1805 ## COG1155 Archaeal/vacuolar-type H+-ATPase subunit A 135 51 Op 4 . - CDS 146867 - 147487 745 ## FMG_1167 V-type sodium ATP synthase subunit E 136 51 Op 5 . - CDS 147498 - 147803 417 ## FMG_1168 V-type sodium ATP synthase subunit F 137 51 Op 6 . - CDS 147803 - 148225 659 ## ELI_2421 V-type sodium ATP synthase subunit K 138 51 Op 7 . - CDS 148237 - 150171 1905 ## COG1269 Archaeal/vacuolar-type H+-ATPase subunit I 139 51 Op 8 . - CDS 150176 - 151177 824 ## FMG_1171 V-type sodium ATP synthase subunit C 140 51 Op 9 . - CDS 151170 - 151493 422 ## gi|282882889|ref|ZP_06291494.1| viral A-type inclusion protein repeat protein - Prom 151529 - 151588 11.4 141 52 Tu 1 . + CDS 151826 - 152101 63 ## gi|282882818|ref|ZP_06291423.1| abortive infection bacteriophage resistance protein 142 53 Tu 1 . - CDS 152322 - 152735 493 ## gi|282882895|ref|ZP_06291500.1| putative lipoprotein - Prom 152838 - 152897 6.5 143 54 Tu 1 . - CDS 153191 - 153361 278 ## gi|282882798|ref|ZP_06291403.1| inner membrane protein YbhI - Prom 153479 - 153538 12.8 - Term 153579 - 153610 2.5 144 55 Tu 1 . - CDS 153633 - 154898 2159 ## COG0334 Glutamate dehydrogenase/leucine dehydrogenase - Prom 155127 - 155186 9.7 + Prom 154975 - 155034 10.1 145 56 Tu 1 . + CDS 155206 - 156087 822 ## COG1284 Uncharacterized conserved protein + Term 156183 - 156225 7.2 - Term 156169 - 156212 3.0 146 57 Tu 1 . - CDS 156219 - 157538 1502 ## COG1253 Hemolysins and related proteins containing CBS domains - Prom 157562 - 157621 9.2 + Prom 157559 - 157618 9.2 147 58 Op 1 . + CDS 157666 - 158037 431 ## EUBREC_0201 hypothetical protein 148 58 Op 2 . + CDS 158048 - 158644 553 ## HMPREF9243_0684 hypothetical protein - Term 158425 - 158474 2.1 149 59 Op 1 . - CDS 158684 - 159562 555 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily - Prom 159583 - 159642 4.1 - Term 159615 - 159641 -1.0 150 59 Op 2 . - CDS 159654 - 160184 427 ## PROTEIN SUPPORTED gi|28210085|ref|NP_781029.1| SSU ribosomal protein S30P - Prom 160323 - 160382 9.5 + Prom 160152 - 160211 9.5 151 60 Tu 1 . + CDS 160350 - 162077 1443 ## gi|282882814|ref|ZP_06291419.1| conserved hypothetical protein + Term 162080 - 162121 4.0 - Term 162063 - 162112 6.3 152 61 Op 1 21/0.000 - CDS 162125 - 162349 318 ## PROTEIN SUPPORTED gi|169824836|ref|YP_001692447.1| 30S ribosomal protein S18 153 61 Op 2 24/0.000 - CDS 162362 - 162910 763 ## COG0629 Single-stranded DNA-binding protein 154 61 Op 3 . - CDS 162920 - 163204 258 ## PROTEIN SUPPORTED gi|169824838|ref|YP_001692449.1| 30S ribosomal protein S6 - Prom 163262 - 163321 7.5 155 62 Op 1 . - CDS 163331 - 165412 1879 ## COG0370 Fe2+ transport system protein B 156 62 Op 2 . - CDS 165415 - 165639 380 ## Closa_3332 FeoA family protein - Term 165964 - 165999 7.1 157 63 Op 1 . - CDS 166005 - 167195 1328 ## COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities 158 63 Op 2 . - CDS 167205 - 167468 387 ## COG4481 Uncharacterized protein conserved in bacteria 159 63 Op 3 . - CDS 167477 - 168550 1089 ## gi|282882894|ref|ZP_06291499.1| hypothetical protein HMPREF0628_0581 - Prom 168576 - 168635 7.1 - Term 168623 - 168662 4.5 160 64 Op 1 . - CDS 168678 - 168800 90 ## 161 64 Op 2 . - CDS 168803 - 168931 75 ## - Term 169266 - 169298 2.0 162 65 Op 1 . - CDS 169316 - 171280 2084 ## COG0021 Transketolase 163 65 Op 2 . - CDS 171277 - 172032 859 ## COG1922 Teichoic acid biosynthesis proteins - Prom 172058 - 172117 6.8 - Term 172091 - 172123 2.5 164 66 Op 1 . - CDS 172147 - 172488 363 ## COG2337 Growth inhibitor 165 66 Op 2 . - CDS 172545 - 173705 347 ## PROTEIN SUPPORTED gi|225086089|ref|YP_002657117.1| ribosomal protein S15 - Prom 173744 - 173803 6.2 + Prom 173696 - 173755 7.8 166 67 Op 1 . + CDS 173908 - 175137 851 ## PROTEIN SUPPORTED gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 167 67 Op 2 . + CDS 175147 - 176544 1698 ## COG2195 Di- and tripeptidases + Term 176571 - 176620 10.1 - Term 176564 - 176600 5.0 168 68 Op 1 . - CDS 176605 - 177039 224 ## Apre_1651 hypothetical protein 169 68 Op 2 . - CDS 177049 - 177486 523 ## COG3279 Response regulator of the LytR/AlgR family - Prom 177528 - 177587 12.7 Predicted protein(s) >gi|281297200|gb|ADDO01000057.1| GENE 1 3 - 408 524 135 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLRKRAEKNSKTLKKKQKKKLKNLKKQLKKLEKQAEEAEKKAKEAEEKANNAKAEAEKAK KAAEDAKKKAEASGDEEAKKKAQAALDEAEKKLKEAEKVAEEAKKAAEEAEKAKKAAEDA KNKADKEKENIENET >gi|281297200|gb|ADDO01000057.1| GENE 2 302 - 12937 16458 4211 aa, chain - ## HITS:1 COG:no KEGG:FMG_0049 NR:ns ## KEGG: FMG_0049 # Name: not_defined # Def: putative N-acetylmuramoyl-L-alanine amidase # Organism: F.magna # Pathway: not_defined # 2608 3610 1116 2171 2561 374 31.0 1e-101 MKSVFSFKNIFALFFAFLIMLMDFNPVFAAVSENQNRQVSTDTEKTTKNEGASAKKAEPS STNENPPAKPKAGEDHTGGGVSSANKYDGKKHGLSYSTGGPTYPGDVQVYRDVYPVDGEP GTYQVTMRVEAMNYATHPNDLVVVHPAARVYQRWRDYSYNRDSSDVQNTVRSGVNDLRNN GYRNLRYCFVNTADDGRLGITSDYSVNIDNPEDSKEYRLDKNLVFGSEVSQNYINENRSE FKIQKNAIEKAVEILNRNPKANKQLLIVGDTDEDLSSIKGITIHQISTEKATGVNGIYYY WYNDYGSSYRYFDEAFTNFFNKITGYLTNEIEQTNPLDKTCSPMIKESVNAGFSILPDSV AITTEGLKNDIKKEYQPVLAKNGTDITWNIGDTAVRSAIKGPVDLGEQRATYAAELTYKV RASANLDNVKDLFLAKYMGGKFTFNYIPDLSNTKTAQGRVKYFENRQINLPVVKVQTQIG YYTTKGEWKELTKDLGNISHIKYELKSADPDQKDPKNLITNSIMMNQSYTVYDSLKGDKF TFKQALTEEQANTLSPADLKIQFGEEGRVPLSEDKDNLTKEPYSKKTTPFELKRDIKTQN SYKPFTIFVTNELKKDGKLKIKYQINDKDIEANTNGSKYTFKVTGTMPGTSDEVYSKDCS LPDIYGRYELELDNLPIGDYQVVADNPGGEFDSATYYKDSDGMNDGIVQIRGNNKKAKVD VNFKHRDLEEDCIATLRVDSVLKGQKEISIEDLKKDDAYKNILYLQRYNDNNYEPIKATP TIELVKGTKVFKFTWDKKNLAMNYAPGKKYTYSVRDNSFNSYVNLGDRQFLITNPRAGEF VLNEAPTKKDVTGEVIYHPGIAEKEIPKLNIELYKRNSNETKFTKASDAVEFTKDNDTGK YKGTFKDVLIRDKKGIDYEYRLKVVDDDKNSVDSFERGEYQDSEHKWNDQGLKYYTFYNV SNNAPTVAVAPFGQLTIKNKVSKNAITEKTTHRDFKGKLFVAKTQGYNANQTPEYQYGKD SFIEVDIDLNKTNNYSQTIRNIPFYILNQEKYWTSYYHIVEDDEGKDDNYTVSFTDKNDY GIRGDFLTVNASKKKIAYGKSSIYIQYDNEKHKFNYIDNFEDTITVDNRIKNKLDYVAKV QYTKCDHDFPKDSVGNPRLRLKRDDVYDKTVPEITSEISKDGNTITYTYRWKDMYAIDDV EKTYTFDVEPQGEVKNYNIIRIGDGDYKYSQGTEGTEEKTKIFTYKEIPIKQNIVAKINF DKVDKNERFAIPLTLFRKNRNNPEEIVDEKCSATEQNGSYSYTYKDLDVRDQSGLEYEYY FKAKNDIGGTISDDTHTWGENREPLQYYIDYAKSYTIDYEKDKGPDHLGILEATVNPYGT ITIKQEINNAPAKEGEYEAILSAWKNPGRKDGVSNWKNIKITLNAKNNYTVKMRNIPYYW KDGNNTRAQLYHKLVESQVTDDKYLVRYKDSYANVSKDPGSTGRPTRSDGEVLFSPEKTE HEITVNLISKGNQELQTRVTFELLNGTQMPDAKDNFNLENQMYLKRNGNKYVEVLPKATL DKKASSEFKKVYDYEWNGLYDVDNSDNQYTYTIEALYQKEPYSEQHLAFIGDRQFLVSWT NDKKNYTFKEIPTKKDLTAEVIFDKVIKAPEELEPEIELLKKADGDVETTEVAFQKIKEL KNKKPNDISKHYGLEYKDLPIRNKEGKFYQYYLKLKDEKDKYVKLENKKDKSQHSYNIIY SAPSDTAEPTVNIYPKGTLYIKRLADGKIPNSGVYEITIQGPDSRYRNGYTFKFTKSKNY EMKLEDLDYGTYTISETADPESNYTISVNKNGSSSNSFSLINKDSFKEVEVDAVSKPYGS IIAHNKYDMNSGQIPDDSKNPRLSLYEGSRPLSIKPKVTKDPDDKDAYIYTWEKVPLAVD GNTVSHSVKVKDLGPGNLVTIGDKIFRVRDSGVNSFTHKELKNNESIVGHLLFSKDSTSK PKKIKVELWRKEKGSPVLLADQVRDYTIRGSETEVSFDNQPIRDNDGVAYEYFLKIRGEE GGRYRGDNNKVYAVTYNGMDVSFGSTGALKIKVKVDDKDPSEGKTMKPEEIAKQDRFVYK IEGYYYSYYSYHKCYEKMITLPDNDGNYSMTLTNLPIVNGSTYYDIIPFHGNAAAFPYNV EITTSTQTNPSTSGRVYLDSSNKERNVVINNIKIQKVNIEAINRYDLKNPDDKTEVNDDT IEPRLQLYRNGSALADREFLPAIEKLPGANSYKYNWKDLAPYDENGSAYNYEVKFITDPN NPNNIKLGKRYYKLTQIDANNFVHTEIEDEINLTALVFYGKNAPNKKPPLKLQLYRRCDG YVEKVEEQVKDVVYNAGQFKARFDTQKRHDKGGNFYDYFVRVVGVNDDEDQTLESDGIKY RVIYEGMKVTLVPVTEPVELRVNVNFAQDVMGKDTRVLLLRSIPGGNLEQVTDKIIKIEA KEGASGTATLGEWPLYDDNGNEYTYRVKEFGEKDSVIKDKTGEYLVSYSRAGNIFTIKNS KKIAGKDIIATVKFTFGPKYLDNVYTFSSEKNKSYKAKDLVEAAGLLETLKGGKKKGYQA KNPEEIFSVGEENITFEIPVDVYTDEPVIEQKPGQPKPTVPENYAVVEFSAGEHGKIKAG QTYKYWVDPKKTVTLKAPEVEANDGYKQKPGEAAWDTQIKNIKFAKDKRINANYFEKVLV KDPGDSTNYAKVDFKTSKGTLDGQSEYWVLKNENVSFKEPNVKDLKNHSFVGWDPKIQDS YSDNKTHNATFKYDKDDVMAQEGDEKPDVPDNFVKVVFNEGTNGTIKGNKVFWVNNNKEV TLKEPSVTANNGFKHMGWDQELTQKFTKDNTTITAQYKQICVETDPKDSEDYVKVSFEKT KGDFNGQSEFWVLKNTEVSITPPRINNLSDYEFSRWEPEVKKSYKLDTTHVAKYNYTGSD FKPQKDGEDRPAVPDDFVLVEFKDGEHGKLSGVKKYWVNPTKSVTLSAPDVKADDSYKFT GWNKILSGTFATGTEIVAQYKKIVLESDPSDTNNYAKVEFATDRGTLEGRAVYWVLKNEN VNLTQPKVKFTGDYTFSGWDPKPQNVYTEDKTHKASFDYNGKNVVAQSGNKKPDVPEKFK MISFKQGEHGTISDDQTTIYWVNPDREVDFNNILPSIVTDKGYKHTGWSSKLRGTFAKDT DITALYKEKLVKANPNDEDYAKITFKTNKGKLEGTSEYWALKGEKVLITPPNVVSLDNTG YSFVGWQCLSKEWDSNTEMAYSNDTEISAKLNYVGNNVVAQTGSDRPDVPNDFVQITYRG GEHGSIKSGQRYIYWVRPNVNVSLNSPTLEVNKDYKQKDGADAWDHALTDTSFGSATTIT AQYFKKVLEEEPESKDRSKYVKVSFVTDKGTIKGTNAQKKDYWVLKDTDVSLTIPSVEGL TDYVFKDFGKIDKTFSQDTTYNATFTYNGKDIVVQNSGTKPNVPENFVKVTFKPGDKGIL KGDSLYWVNPAKELDLNSVKPQVIVTDDSYAHIGWSRELKATFTDNTEITALYKQLVCEN DPRDTENYAKVEFKTDKGNLDGTSIYWVLKGKTVKIKEPNVNLGSMYEFTSWEPSVAKTY SKDTVHNAKYGYKGKDIVAQSGSEKPDVPKDFVKVTFVADDHSSLDNNKSHIYWVKKGKK LDLTDYAPSINVTDKDYKAFGWDRNLNTTFTENENSIKAVTKVILTSANPNDDTNYAHIT FSTEKGNLVGQTEYWALRNEKVSITPPSISGLVDQKFTAWNPEIKNSYDGDQEHKAVLEY NGPDVIAEGQSNIPKDFVKVTFSAGTNGKITKGKSIFYVNPNKKVDLTSYISDLTIVGNE NYKFDGWDRILNEKFTVETTITAKYKKILVDTEEQPVIPGTSNPDPAYVKVSFDKGEAKE ELTGKKVFWILKGEKLKVIVDNLPSADKLVAWTLGTKEYKKDLSDYDEYVTSDLNFVAKY ESKTAPTKKYYSITAPAEVTELKGTKGSGENANKYEENTEVSFKVNVGADKTLKTVKVND DVITATSGEYKFTITKDTTITVETESKTAPTPGESELDKAKQALEEAKKVAEKAKEALED AKKKAEEEQDFERKKEALEKVKAEAEKVKAEADKVKAEADKVKSEADKVKAEAEKAKAEA DKAIAEADKAKAEADKAKADADIAKAEADKAKQALEDAKKKGGKEFEDAKKEAEKKAEES KKAAEEARKAS >gi|281297200|gb|ADDO01000057.1| GENE 3 13250 - 14560 1151 436 aa, chain - ## HITS:1 COG:CAC0326 KEGG:ns NR:ns ## COG: CAC0326 COG2256 # Protein_GI_number: 15893618 # Func_class: L Replication, recombination and repair # Function: ATPase related to the helicase subunit of the Holliday junction resolvase # Organism: Clostridium acetobutylicum # 1 436 1 436 443 362 47.0 1e-99 MNLFDLSMEKNLNNKSPLADRLRPKNLEEFVGQDHIIGQGKFLSRLIKSDRVNSLLFYGP PGVGKTTLAKIIANLTNKNFVELSAVTSNIKELREVLNKAQDDFKFSNIETIVFIDEIHR FNKTQQDALLPYVERGIIILIGATTENPYFEVNKALLSRLQILNLTALENKDMNKLIDRA ISDKIKGFGNLKINLSEKAREFLIRNSSGDGRFLLNSLEIAVLSTDKVDNEVNLTLDVLE NSMQRKKLLYDNGGNEHYDTISAFIKSLRGTDPDAALYYLAKMLESGEDIKFIARRMIIF ASEDVGNANPMAMVVASACFQNINAVGMPEARIILGQCATYLASSVKSNAAYRGINEAIS DIKEEGKSTIPIYLRDKNNPANKSDEKYLYPHDYENSYVKQDYLPYELKDKKYYKPKNIG YEKEIIDYLKKIGKEK >gi|281297200|gb|ADDO01000057.1| GENE 4 14547 - 15008 545 153 aa, chain - ## HITS:1 COG:CAC1698 KEGG:ns NR:ns ## COG: CAC1698 COG1327 # Protein_GI_number: 15894975 # Func_class: K Transcription # Function: Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains # Organism: Clostridium acetobutylicum # 1 149 1 150 151 168 62.0 3e-42 MKCPFCDYEDSKVVDTRPTEDNTIRRRRECLKCKGRFTTYEKIESSPIMVIKKDGTRQAF DRDKIINGMIKSCEKRPVSREKIENASDRIEKNIQNSMKKEIYSKDVGEMVMEELKKLDE VSYVRFASVYREFKDLQTFVDELEKIINKNESI >gi|281297200|gb|ADDO01000057.1| GENE 5 15129 - 16211 1715 360 aa, chain - ## HITS:1 COG:CAC1693 KEGG:ns NR:ns ## COG: CAC1693 COG0206 # Protein_GI_number: 15894970 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division GTPase # Organism: Clostridium acetobutylicum # 1 360 1 372 373 373 61.0 1e-103 MLEFDMDHDDFAKIKVVGVGGGGNNAVNRMISAGIKGVEFYAFNTDRQALKSSLADNKIQ IGEKVTKGLGAGANPDVGQESAEESIDEIKESLKDTDMVFITAGMGGGTGTGAAPVIAEI AKELGILTVGVVTKPFAFEGMKRSKSAARGISALKDKVDTLVIIPNDRLLSIADKKTSFS EAFEMADEILKQGIQGISDLISVPNLINLDFADVKTIMQDKGIAHMGIGIASGDDRATEA AKLAINSPLLETSIEGAKSVLLNITAGNDLGIFEVNEAADLIRECVDEDANIIFGAGIDE TLKDQVKITVIATEFDQYKDDGKKDDKKKPNLVARNLKENEEEDNGELKIPSFLKINRNK >gi|281297200|gb|ADDO01000057.1| GENE 6 16376 - 17134 893 252 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282882863|ref|ZP_06291468.1| ## NR: gi|282882863|ref|ZP_06291468.1| FtsQ-type POTRA domain protein [Peptoniphilus lacrimalis 315-B] FtsQ-type POTRA domain protein [Peptoniphilus lacrimalis 315-B] # 3 252 38 287 287 379 100.0 1e-103 MFAIRHSSLFKVKDINISGIEKVKREEVLRKAKLGPADKFYNISKKDRINSIKSIPYVKD VKLTFNLGGKVNINIVERKPYYQIQKKDYNLIDSDFRIIDTTKDKNSNLMDIYGLDIENL KVGDYILRDKDSQEKVMLLEKLRDSKFNLEGNIKSVSLLDSISTFVTVDGIKVEFGSYNN IDYKLNMLKLILEDIKNTGKNVSLIEMEKSENPIVVEKDTKEEDIFDNNNTSKDTSVVIN NDVKQKVINNKN >gi|281297200|gb|ADDO01000057.1| GENE 7 17253 - 18335 1246 360 aa, chain - ## HITS:1 COG:BH2565 KEGG:ns NR:ns ## COG: BH2565 COG0707 # Protein_GI_number: 15615128 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase # Organism: Bacillus halodurans # 1 358 1 363 363 275 41.0 9e-74 MKYILSGGGTGGHIYPALAICDELTKQDKDAEIIYVGKKDSLEEELVGKKGYNFRPIHIS GLPRKKINKETFITMVNLMRGLSESTKIINDFKPDFVIGTGGYVCCPIVLKAQQKGIKTM IQEQNAYPGKTNRFLSRKADLVFLNFKEAKKYFKNSNVIFTGNPIRNDFSHLDRNKKRQE LGLKAEDKLVFSFGGSGGQESTNDAIKEIIKGDYNIDFKLVHVTGREHYEGFMKDLEIPE NVKIFDYSFEVPKYLMAADLVIASSSAMTLAEISAVGLASILIPKSYTAGNHQVFNANSY KDINASQIITEDKLTGKLLYDNIEEILNNDDLRKKMAENSKKMGNPDAVSEIVREIIKFK >gi|281297200|gb|ADDO01000057.1| GENE 8 18335 - 19459 1059 374 aa, chain - ## HITS:1 COG:RSc2845 KEGG:ns NR:ns ## COG: RSc2845 COG0772 # Protein_GI_number: 17547564 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Ralstonia solanacearum # 6 369 34 400 413 169 33.0 8e-42 MKLKIKSQIKEVDLILLFDVMALLIFGLVSVASASFPTTIKYDVNRFYYLIRQLVWMVLG IFSVLFIIKVNKNFIKKNIDWVFLLSIILIFMLWTPMGKLVNGQVRWLKIEIAGREIFAF QPSDILKVSSILFLAKYLAKNFNKIKEDSIFVTILVIMGFSIVPIMIKDFSTAIVIGLAL FAMFTSAGMTKKEFLIMLLMGLGLVILILMGPGSKYRRERIMGLIASDQGDVSDELYQIT QSLYAIALGGYTGSGFFQSKQKYANLPEAHTDFIFSVICEEFGFVGALVLIILYLILIYR GFKIATQTDDLFYKFTAIGITTYIGIQAFFNIGVTCKILPVTGITLPFISYGGTALVMSM VAVGLLLKISKDGN >gi|281297200|gb|ADDO01000057.1| GENE 9 19462 - 20778 1360 438 aa, chain - ## HITS:1 COG:BS_murD KEGG:ns NR:ns ## COG: BS_murD COG0771 # Protein_GI_number: 16078584 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramoylalanine-D-glutamate ligase # Organism: Bacillus subtilis # 55 438 70 450 451 283 40.0 5e-76 MFRDKKILVMGLGITGRACLKALNQMPCKVYCYDENKDLNLEDIEEDFVMLKDGDLENID IIIKSPGIYPDHPLLEKARNLGIKIISDLEFAYKISSCKNLIAITGTNGKTTTTTLVGQI LRQVNKTYVVGNIGRGISEIALEAKNNDFIVIEASSFQLEDTHEFKPKVALLTYVTKDHL DWHKTEDNYRNAKYKIFANQDKDDFSIINYDDRSRDDLKDLKSNIYYFSTEKKDIRGCYL DDGKIIFKDGDIREEIIDIKDIKIPGIHNVKNVMGAIIIAKIFNVSNDIIKQSIKIFSGV EHRIEFVKKVNGVSFYNDSKGTNPDSTLVAVKAMTNKTILIGGGYDKGSDFNSLMENIAP NLRSLIVFGQTGPKMAKEAKNYGIEVFIVKDLPAAVKLGVSLAKKGDSILLSPACASWDM YSSYEERGKHFKKIVKEL >gi|281297200|gb|ADDO01000057.1| GENE 10 20782 - 21735 587 317 aa, chain - ## HITS:1 COG:BS_mraY KEGG:ns NR:ns ## COG: BS_mraY COG0472 # Protein_GI_number: 16078583 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase # Organism: Bacillus subtilis # 3 314 6 320 324 263 50.0 3e-70 MKVIVVLLVNFIIALILGRIFLPILRRLKAGQSIREDGPKSHLKKSGTPTMGGLIFLITI LITTLIFTNFKLSVFMLLFATFAFAGVGFIDDYIKVVKKRNLGLTAIQKLLLQILVALIL LIYQYNSKNLHTMVFIPFINQFCSFGIFYIPFIIFVVVGTVNSVNLTDGLDGLSSGVTII CLGFFAICAYKLQRMEILLFCICLLGALLGFLIYNKYPAKVFMGDTGSLALGGAVSAIAV LLNLPLALPLAGGVYFIETLSVIIQVVSFKTRGKRVFLMSPLHHHFEQKGWKEQKVVLTF YLVQLIFCIIAYFIILG >gi|281297200|gb|ADDO01000057.1| GENE 11 21737 - 24154 2998 805 aa, chain - ## HITS:1 COG:CAC2130 KEGG:ns NR:ns ## COG: CAC2130 COG0768 # Protein_GI_number: 15895399 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Clostridium acetobutylicum # 16 753 6 725 729 344 33.0 5e-94 MRILKNKARKDKNIFLKKRQRVNNSALIFFLLLAILFIIIIFRLLYIQVVESEKLTIDAL NQITKSEVISSNRGIIYDRNMKELAINISKANVFYNMSYLERVKKESAGDYKKRKNKILL EDSKIISEICQVDQEEVLEKMKGSKVVRLVSNIDRAMAMKLRDKRSALSKEKKDNLQALS VDDVIRRFYPFNNLASYVIGFTNDENLGQYGIEASFDEELTGIPGKNVSQKDNAHNIIPL TDEETFAPKEGYSVVLTLDSNIEQFVESAAQDALKKNEADQVDVIVQDTKSGEILAMASK ADYNLNNPKEPINQDQEKNWKSYTDEEKTNIWYDNWRNFNVNDQYEPGSTFKLITASSAL EQNTTSPDKTYVCTGQVNIDGAILKCTSHQRGPKTMAQALEQSCNVSFVRIGLELGRVNF LRLIKAYGFGERTGIELNGEASGLIPSSPDSISDVRLATMSYGHGIAVTPIQLINAVSAI SNGGYLNRPRIVKEVVDENDNVIEKKDKSVLRRVISKETSDTMRILMERVVKNGTGKRAQ VPGYRIGGKTGTAEIAKKDGTGYEDAYIASFIGVAPIQDPKITVLVIVKNPKGEILGSTV AAPVAGQIMDRTLNYLKVPKTEEVKDDKKELVSIPDVTGKLIEDGGKCLIEKGLRFNTNI NDIKDTAVIVGQNPSQGVEVPYGSIVDLAIENNNQEKITMPDLSGKSKREIESILNKLKL EYNIKGDGYFISQSPAKGEKLDKDKLVEIVLEDLGDSSAKDDENNSNKEKNIFKTKGNSY ENKNSENSKSKDKNKKSKKNINHGD >gi|281297200|gb|ADDO01000057.1| GENE 12 24164 - 24583 431 139 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282882805|ref|ZP_06291410.1| ## NR: gi|282882805|ref|ZP_06291410.1| putative cell division protein FtsL [Peptoniphilus lacrimalis 315-B] putative cell division protein FtsL [Peptoniphilus lacrimalis 315-B] # 1 139 1 139 139 249 100.0 5e-65 MTKKIIANTKKLKRSYNIKMSHGIFRNKPLLFTMIIVAMVITASTFMYSQIAGLDRQILS TKHEINELKKTKMTLSGDLKGIKSQIEVADIAMYKLGMVYPDDWQIVYIDTKTKKPQGDV NYNVFLSPIVSVLRSFQNE >gi|281297200|gb|ADDO01000057.1| GENE 13 24561 - 25523 913 320 aa, chain - ## HITS:1 COG:CAC2132 KEGG:ns NR:ns ## COG: CAC2132 COG0275 # Protein_GI_number: 15895401 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis # Organism: Clostridium acetobutylicum # 1 312 1 312 312 336 57.0 4e-92 MEFKHVSVLYNEVLENLNIRENKIYMDATIGGAGHSKGIAKILNNSGLLIGIDQDKDAIK KSQEVLSEYENVKLFNTNYKNFEEILDSLHIKKVDGILLDLGVSSYQFDKGERGFSYRFD SELDMRMDKSSPLTAKTIVNEYSKDELYRIIKEYGEENWAKRISEFIVQERKIKKINTTF DLVEVIKKAVPKGARRDGPHPAKRAFQALRIEVNDELNVLKKSIYKFVERLNPGGRLAII SFHSLEDRIVKNAFRYLYSDCVCPPEQIICTCDKKREIEIITRKPIVPTKEEIKNNNRSH SAKLRVAEKLEVSHDEENNC >gi|281297200|gb|ADDO01000057.1| GENE 14 25523 - 25951 502 142 aa, chain - ## HITS:1 COG:CAC2133 KEGG:ns NR:ns ## COG: CAC2133 COG2001 # Protein_GI_number: 15895402 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 1 142 1 142 142 169 58.0 2e-42 MLIGEYYHSLDPKGRVIIPSKFREDLSEFVMTKGLDECLFLYPNSEWEKIENKLKELPMT NKAVRSFVRTFFSGACDCAIDKQGRVLIPQNLRDYANIKDSSVIVGLSNRAEIWSQENWE KYNSEEGLTYEELAEKMSELGI >gi|281297200|gb|ADDO01000057.1| GENE 15 26193 - 27641 1346 482 aa, chain - ## HITS:1 COG:BH3156 KEGG:ns NR:ns ## COG: BH3156 COG0642 # Protein_GI_number: 15615718 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Bacillus halodurans # 253 475 352 575 589 147 38.0 5e-35 MIQENENIKEIKKIKIDKNSILFKLWTYFSLFSIIILITLWLLQTVLFSYVYETLKIHEV TKVGNTLRNEYNSDNFQDTLINFTNSKGLTISVLDEDGAIIYPVTWFQLIESSKSYMSRN TFDRFFGSLERENLKYKVTTMRFEKDSEPRIIYSGYLGENGGKKYYVIIDTVLKPVDVTV DVTKRILLMVTILSLFSGMFLAYFLSRRLSQPLVRMSNTAKALADGDYNVYFKKGEYTEI DNLSKTLNYAKDELTKTIEVRKDLIANVSHDLKTPLTVIKSYGEMIRDISGNNEKMRNEH LNTIISEADNLTNLVNDLLDLSKVESELEDIKKQDFDLAEVVEKVAERFKYFKGFPINFQ IYTHGNTKIVADKKKIEQVIYNFINNAINYSKDNKEIILKIIESDKGVEFHCIDHGIGIS EKDIKDIWDRFYRVSNNHTRPSVGTGLGLYIVKTILNMHKFPYGVNSKLGQGSDFYFVGN RN >gi|281297200|gb|ADDO01000057.1| GENE 16 27625 - 28296 911 223 aa, chain - ## HITS:1 COG:CAC2435 KEGG:ns NR:ns ## COG: CAC2435 COG0745 # Protein_GI_number: 15895700 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Clostridium acetobutylicum # 4 223 5 224 224 197 45.0 1e-50 MFRILVVDDEKKIREVIKTYAEFEGHEVVEAVDGIDAIEKVKENDFDVIVMDIMMPRLDG FSSYKEIKKIKDIPVLMLSARGEEYDKLFGFEIGIDDYVTKPFSPKELMARLNVIVNRNN KTTNNDNLIFQGLKIDLGGRVVFVDGEKIDLTPKEYDLLVFLVKNENIALSRETLLNKVW GYDFFGDDRTVDTHIKMLRNSIKDYRKFIVTVRGVGYKFDTRE >gi|281297200|gb|ADDO01000057.1| GENE 17 28398 - 30560 2160 720 aa, chain - ## HITS:1 COG:no KEGG:Swol_1370 NR:ns ## KEGG: Swol_1370 # Name: not_defined # Def: hypothetical protein # Organism: S.wolfei # Pathway: not_defined # 2 700 8 701 725 243 28.0 2e-62 MKKLLVSFLFIVLIFSGCSKNNKQMQKDSATGESQIAEENMEESPLKNTVKDVDEIHRDV KVNYENIDVKEDLSNITNLKAYYDEMAIPDKVKEHILKDGFYVDNSYGSEEPFQTYEYNE YLSMSNFVTTDSMVHLYHVFYDNTLRKIEENKFLPMLKSFNSKMLEYAIKDYEEAKDDTV KEAAKKNLILFETGEFIIGDNLIKSDNNLRVDEEIFNLASNEYKNIRSEKSLVSNISGED FDYSQFKVRGHYTKSENLKKYFQLNMLYSQNKFYIKDENQLNYGNIIGSLLATKNILKDE ELSKIYLDVVGTLDFLVEESEKASPVKMAIYYKKYFDKTSDINKLNDKKVLEKIGEDLDK DKLEIAGFKGNYFAIIPQKAPIDNKWAQKLVDVGGNGPSQKPIYKGIEIMALIGNGTAQK LVEEDKDIKKWDKYPKIFQNLKDEVENLPENFYNKNLYRGYFSLMKEFSNTYGNKSPKFM QNENWNKKNLSSALGLWAALKHDTILYSEVVSAEMGGGYDVEICNFVEPNIKLYERLDYL LNFTKENLTDRNLLDDKQLKAFDNFIDLNKFLIECSVSELENSTLSKEANDRLTYIGGEM ENIFISFVDPNAKAFWELEDSSQRDMAVVADIMQVPANTWGLKEGDFQEVGLGYSNDMYV VYALNGKLYMGRGPVLTYYEFQSENRLNDDEFRGKLRNNELKQEAFTNTYSFNIYNDLGY >gi|281297200|gb|ADDO01000057.1| GENE 18 30541 - 31143 326 200 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282882921|ref|ZP_06291526.1| ## NR: gi|282882921|ref|ZP_06291526.1| hypothetical protein HMPREF0628_0441 [Peptoniphilus lacrimalis 315-B] hypothetical protein HMPREF0628_0441 [Peptoniphilus lacrimalis 315-B] # 17 200 17 200 200 310 100.0 3e-83 MKRLFFIFLILIIFFFNAKEVPKYKDKGFIRNNNMEEEVICLGPRFSNYANTISVPSAGF KIKLKGKNKFNIFKVDICQMDKEKTQEIIFGVYKKSPHHRVMAKRIFIYNFTDKFVPKYR SSRLSKPLLDYMVKKENISKIYAILKTRNSKNVEVYIYDKFSFKRIYTYNLEKYEDIKFK NGNILVKDKGRWKIYEKVIS >gi|281297200|gb|ADDO01000057.1| GENE 19 31246 - 32673 1338 475 aa, chain - ## HITS:1 COG:CAC2669 KEGG:ns NR:ns ## COG: CAC2669 COG0064 # Protein_GI_number: 15895927 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) # Organism: Clostridium acetobutylicum # 1 475 1 475 476 470 51.0 1e-132 MSYETIVGLEIHVELSTKTKAFCSCENSFGGEPNTRVCPVCLALPGAMPVLNRNVLNYAV MASNALNCKINNKSKFDRKNYFYPDLTKGFQITQNDKPICENGYLEIEVGDQKKKIGIFR IQMEEDTGKSLHTEEGETLMDYNRCGVPLIEIVTKPDMSSGQEARAFLEKLKNTLTFLGI SDCKMEEGSLRCDVNVNIKDKESGKKTAVTEVKNINSFRGVEKAIDFEVQRHKKILEENI DEIRTTRRWDDAKNETILMRVKYTVSDYRFAPEGDLPPVVISDDDIKEILSHMPELPDAK KERFKKEYNLNEYDSNILTSSKELSEFFEKIAKEFDDYNMLSNWTLTEILRRIDIENNEK FELPFEDKEFIELLKAIKSNKINNNAGKKVLREMFETGKKCNEIIEDLGLVQISDSGQIE KIVDKVLSSNPQSIEDFKNGKNRALGFLVGQVMKESHGKANPQIVNKLLNEKLNK >gi|281297200|gb|ADDO01000057.1| GENE 20 32670 - 34112 1686 480 aa, chain - ## HITS:1 COG:CAC2977 KEGG:ns NR:ns ## COG: CAC2977 COG0154 # Protein_GI_number: 15896230 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases # Organism: Clostridium acetobutylicum # 1 477 1 476 478 424 44.0 1e-118 MRIVDLTVKDLANGYRNRDFSVVEVTKEYFKEIKEKDSKINAYISLNEEEALKQAKEIDE KFKNRDELTSLAGIPISIKDNIAVKGLRMTCASKMLENYVSPYDAEVVKKIKENNGIILG KVNLDEFAMGASTKTSYFGVTKNPLDTSLVSGGSSGGSAASVAGKMAAISLGTDTGGSVR EPSSFCGLVGMKPTYGTISRYGVSSMANTFDQVGVIGKNVSDTAMLLQMLEGRDEKDATS VGNPSLKEEFSYENVIDNLKGLKVAIPSIYMDMDLDKDVKAEFDKAIDILLKNGAIVEEY PIESLKYVIETYHILVNGEIASNMARFDSVIYGHRTDDFSNIEEMYRKSRAEGFGEEVKR RIMIGTHILSLDLADEFYYKALRVRGLIKRDMEKMFKDYDIMICPTYPIHPFKIDNNMSP VEIYQGDLFTIPANMVGSPSISIPMPKNDKGLSVGIEFTAKRFKDRELLNAAFGFERSLL >gi|281297200|gb|ADDO01000057.1| GENE 21 34119 - 34400 355 93 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282882797|ref|ZP_06291402.1| ## NR: gi|282882797|ref|ZP_06291402.1| glutamyl-tRNA(Gln) amidotransferase, C subunit [Peptoniphilus lacrimalis 315-B] glutamyl-tRNA(Gln) amidotransferase, C subunit [Peptoniphilus sp. oral taxon 836 str. F0141] glutamyl-tRNA(Gln) amidotransferase, C subunit [Peptoniphilus lacrimalis 315-B] glutamyl-tRNA(Gln) amidotransferase, C subunit [Peptoniphilus sp. oral taxon 836 str. F0141] # 1 93 1 93 93 130 100.0 4e-29 MTRDEIKHIADIAQIAFTEEELKGFEKNFKENMELVEKIKNIDTEGLDEVFQVNGTENNL RNDEIKKSMSKEEATANTASEKYGYFKLLKFVE >gi|281297200|gb|ADDO01000057.1| GENE 22 34393 - 36387 1896 664 aa, chain - ## HITS:1 COG:CAC2673 KEGG:ns NR:ns ## COG: CAC2673 COG0272 # Protein_GI_number: 15895931 # Func_class: L Replication, recombination and repair # Function: NAD-dependent DNA ligase (contains BRCT domain type II) # Organism: Clostridium acetobutylicum # 6 659 10 666 669 652 52.0 0 MQASEKMQKLVKELNRYGYYYYTLDKSLIDDKVYDRMYDELVNLEKEENIVLADSPTTRV GGQILKSFQKHKHLNPLYSMNKAQSFDELRDWIEKNKNFIENYNESHEDKLSEMELILEL KFDGLTINLTYEDGYLKMATTRGNGLIGEVITSQVKTINSIPLSIDYKGLVEIQGEGLMP LKSLEEYNKKASEKLKNARNAAAGALRNLDPKETKARNLTAYFYNVNYIEGKNFKDDVEM KEFLKSQGFLVSKYNYKVKSFKDVQEKINYIADIRKDLPIQIDGVTIKINDFKTREILSF TQKFPRWSIAYKFEAEIAESKLLEVVWNVGRSSKVTPSAIIEPVEIDGVTIKRATLNNFD DINRKKLRLNSNILIRRSNDVIPEILGVLPSDEKTFAIKRPKVCPACGAHLFQDGVHIFC PNTLSCRPQLVSRLVHFASRDAMNINGFSEKTIEKFMDELGLKEIPDIYNLKYDDIIKLE GFKEKKTKNLLEAIENSKNPFLSNFIYAIGIANVGIKTARDLAKHYKNFMAFSKASFDDL IEVGDIGPITAKEIINFFADDHIKDGLQKLFSYGIKVVYEENLNKDLKFEGKTVVITGSL SRKRKELEEELINNGAKVSSSVSKNTDFLIVGENPGSKYDKARELSVEILNEEELNKILG GGHD >gi|281297200|gb|ADDO01000057.1| GENE 23 36387 - 38549 2467 720 aa, chain - ## HITS:1 COG:SA1721 KEGG:ns NR:ns ## COG: SA1721 COG0210 # Protein_GI_number: 15927479 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases # Organism: Staphylococcus aureus N315 # 3 717 5 726 730 607 46.0 1e-173 MDIDSLNDKQKEALLYNEGPLLILAGAGSGKTKVVTSKIAYLIENEVPSWRILAITFTNK AAREMRERVAMLIDEDVSPMWIGTFHAICVRILRKNIENLGYGSNYNIYDRADQNTIIKE SYKELNINKEIYNSRTILSKISSWKNEELTPSEVLDGNKEDIFNFNAGKIYEFYQNKLKE NNALDFDDLLIKTVELLREFPDVREFYQNKFKYIFVDEYQDTNSIQYKLIKLFCGKAPNL TVVGDNDQSIYKWRGADISNILNFQKDFPGAKIIKLEQNYRSTQNILDVANSVIKNNPQE LSKSLWTKRQGGEKVYYKEFSVSNEEEFAVTNKILGLNYKGYSFEDMAILYRTNAQSRGF EESLSREGINYKIVGGLRFYDRAEVKDIMAYLKVINNPLDEIALLRIINKPKRGIGDSSV EKIRDYAINNNLSMFEVIKNIENYEDLNVRAKKNIKSFANLINLLIERKDLLNVGELAEL VVDESQYVEDLKNQNTLEARTKISNIDELISNIMSYDKETSLSDYLSNMSLLTDIDKTSD AKGVNLMTVHAAKGLEFKIVFLVGMEEGLFPIIRQDEDEDIEEERRLCYVAITRAEDLLF ISSSKTRYLYGKMTPKIKSRFINEMQDTIEIVEEKNQRLIDVIDYSGKIDERITTYKKVQ TPKKSIKSVNVGDKVKHKIFGQGMIVQKKEKNGDIEVVVSFENKGLKKLLLSVAPIEVID >gi|281297200|gb|ADDO01000057.1| GENE 24 38549 - 39235 868 228 aa, chain - ## HITS:1 COG:FN0725 KEGG:ns NR:ns ## COG: FN0725 COG1179 # Protein_GI_number: 19704060 # Func_class: H Coenzyme transport and metabolism # Function: Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 # Organism: Fusobacterium nucleatum # 3 222 2 231 234 189 48.0 5e-48 MGFFDRSRLILSDEELEKINNSSVLVFGLGGVGCAVCESLVRAGIGKIGICDKDIYEESN LNRQLYATKESLGKNKVDVTYDRIKSIRDIEIVKYPFDFNKENEDKINFSDYSYIIDAID TIASKILIIEKARKENIKVISAMGTGNKYDPTKFKVSYIEKTKIDPIARIMRRELKDRNI KKVPVVYSEEIPQKTQNRTPGSISFVPPVCGFILTSYVIRDIINRGEK >gi|281297200|gb|ADDO01000057.1| GENE 25 39245 - 40294 1116 349 aa, chain - ## HITS:1 COG:no KEGG:CLOST_0461 NR:ns ## KEGG: CLOST_0461 # Name: not_defined # Def: exported protein of unknown function # Organism: C.sticklandii # Pathway: not_defined # 10 232 14 236 641 80 28.0 1e-13 MKIKKSVALAAILMLSPLNSFAKDFKDVSKVGKVSWAYEYIYKLSEENIFSGFPDGTFKP NKAVSFLETLQILKSINNPSHEDIRNYREKYKNILNEYKIVDWARDCVSYCLDKGVITEL SLKSAYKKGLLNGKKYPSRNTVALLFARSLSVSSVKKKNNLTYKDKDKIPSNVKEVLPAL IETGIFSKDGSDGYFNGSKFIRRSEMAVITYKSKEYLKKNNIKPLENNDKAKDNKVKAKE TDNNIENQNVNSDNNINNNVFSDESLKQEEDKLKEVIKERVKFKGKVTKIVDGGTVKYLT LDIIEIDSNDFILPKSIVVDSEMTHQIGDILEGTCRIEGQNLIDISLKN >gi|281297200|gb|ADDO01000057.1| GENE 26 40494 - 42485 2172 663 aa, chain - ## HITS:1 COG:no KEGG:Daud_2116 NR:ns ## KEGG: Daud_2116 # Name: not_defined # Def: S-layer domain-containing protein # Organism: D.audaxviator # Pathway: not_defined # 4 406 1 388 748 77 25.0 2e-12 MTNIKLKKALAVGLSAVTLLSTSVYAKSFSDVKKVGSYSWAYDAIDVLSNNDVISGYPDG TFKPETPVSLPEVLQLLIQVVNPSEDEIKEADKKFGKFVDENSKVSWAKKALTLSLYRDI ISESEFKDAASKGFFDNSNKYPNRADIAAFFARGLKLSSKGDESYLKHKDKNKLSDSVRG YLASLVKEGIFSSTGSDGYFDGNRAIKRAEAAIITQKGFEFVKRNPLTVKTESMTGKVIL ASKLNNVNVLIIEKDSSKYSFELNQATSYKIQGKVAKFEDLQSGQTVKVEYEKTNDNDKL GLAKVIDITSSSSNMVGYVNSKGNKQLTIRYRDNSSSIDFRTTGKISTADTKIFDLASDV KITAYGNKIDFDKIAVDDLVEFKTDLNNKITEINVFPKNADVRGKVTEIKASKTDGYIKL NLNDNKDYTFYLTSSSSNSLLDIRKDDSVTINVNYKVAIDLSSNVGNISGTISDFYSGSY FNRGYLKIKDSSGNEKYYDLADNFKFENNSGSATNPQMRDYDYRGLSVSLVLDSSGKVTK IIRTDKNNQFSARAQVISFNSASNPFNLSQYDVKVKVINSDNRNVILGQTYDIRGIIDRS LSLYDILDISGYINSNGQPVIEYTSFNTHYSGEVRVDDTYRNRYDFSRYYNGYGYYDYSI YHR >gi|281297200|gb|ADDO01000057.1| GENE 27 42634 - 43395 1050 253 aa, chain + ## HITS:1 COG:no KEGG:Kkor_0729 NR:ns ## KEGG: Kkor_0729 # Name: not_defined # Def: uroporphyrin-III C-methyltransferase # Organism: K.koreensis # Pathway: Porphyrin and chlorophyll metabolism [PATH:kko00860]; Metabolic pathways [PATH:kko01100]; Biosynthesis of secondary metabolites [PATH:kko01110] # 1 172 1 172 484 78 27.0 2e-13 MRYLPVSLDTRDKNILVLGGGYMAYSAIKTLAKTEATIYVIADIINDDIKKLADNYEEGR FKLKEEELTENFVFMGYDYVIIATENFQINQAMEKRAIDRKMIYQRCDILSSSTIVLSKV LEHGSISVGVSNSKLNPVVTDKVYSEIEKLLDTYSLDKLNILNSIRSELIRKNTKDIDDI IEGLYKEDDKTLDTLYKNIKDFKIDDKKSIDEILNAIKTNTDIKLTKEDINKEEAIEENI KEFKELTEDKENN >gi|281297200|gb|ADDO01000057.1| GENE 28 43406 - 43687 395 93 aa, chain + ## HITS:1 COG:no KEGG:Vpar_1838 NR:ns ## KEGG: Vpar_1838 # Name: not_defined # Def: hypothetical protein # Organism: V.parvula # Pathway: not_defined # 1 93 1 93 95 79 46.0 3e-14 MLGNTSNIEGKVFSEEKFEVFKKILSAGEKIDKHKHPDYSVLFTVVEGKMKVVLGDEEEH FLEPGKILKFDGENYIQALALENSQIFVILIKK >gi|281297200|gb|ADDO01000057.1| GENE 29 43875 - 44099 188 74 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|300813301|ref|ZP_07093656.1| ## NR: gi|300813301|ref|ZP_07093656.1| conserved domain protein [Peptoniphilus sp. oral taxon 836 str. F0141] conserved domain protein [Peptoniphilus sp. oral taxon 836 str. F0141] # 1 74 1 74 76 105 94.0 1e-21 MNKKEERQMIIVWAIITIIIDVSFLLGLIYYYNRWKAHKDGFVSVGVLLICLLIFNKRVV KDYILKMIKDKKNN >gi|281297200|gb|ADDO01000057.1| GENE 30 44171 - 46540 3106 789 aa, chain - ## HITS:1 COG:APE0650 KEGG:ns NR:ns ## COG: APE0650 COG0574 # Protein_GI_number: 14600866 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate synthase/pyruvate phosphate dikinase # Organism: Aeropyrum pernix # 7 789 31 838 845 736 50.0 0 MSKYNYIKWFDEISKENVGIVGGKGANLGELTKSKLPVPPGFCVTAQAYLKFIDYAGLDE VVRLLMESLDVEDTDKLTYVSKEIQKKIKEGEFYPELKEEIISAYEEFSKKLNVKDPEVA VRSSATAEDLPDASFAGQQDTYLHISGEEELLKHIRDCFASLWTSRAIYYREKQNYNHFN VALSVVVQKMVNSEKSGVMFTANPVTSDTNQMMINASYGLGEAVVSGTVTPDEYVIDKKS GKILEKNIAAKESMVVKKSHGVGTEVVKVSDYLGKDAVNKECLNEKELEKLVEMGKKVEA HYGSVQDTEWGFDKDTKEFYFLQSRPITTLKENNENREENGEMEEEKLVTLVKGLAASPG IGRGKVKLIKDVSEINLVEDGDILVTGMTNPDMVPAMRKAAGVVTDEGGRTCHAAIVSRE LQIPCIVGSKEATKVLKNGDTVTVDATRGIVYQGNVLKESKKEENAGKNGASIGNIDELR NIFAPVTATKIYMNLGEPSLIDRYKDLPLDGIGLMRTEFIFTNAIGAHPMYLAKTGQGDF MIEKLAEGIAKVAQALYPKNVVVRMSDFRTNEFRGLKGGDEVEPIEQNPMIGWRGVSRYI SPDYEEGFRLECRAMKKVREEYGLTNVIAMLPFVRTPEELVVVKDIMADEGLKQSKNFKI WIMAEVPSVVMQAREFARLVDGFSIGSNDLTQLTMGADRDSGVLNNMGYFDERNEAVKRA LKILIEAANAEGITCSICGQGPSQYPELCEFLVECGITSISVNPDTVEYTRRLVASVEQK IILKKLRNL >gi|281297200|gb|ADDO01000057.1| GENE 31 46648 - 47181 683 177 aa, chain - ## HITS:1 COG:CAC0650 KEGG:ns NR:ns ## COG: CAC0650 COG1437 # Protein_GI_number: 15893938 # Func_class: F Nucleotide transport and metabolism # Function: Adenylate cyclase, class 2 (thermophilic) # Organism: Clostridium acetobutylicum # 3 172 2 173 180 75 34.0 6e-14 MEREIELKILNLDLKELENKLIELGAQYLGEEHQENIRINSTGHKIYKKVGYLRIRVSQK DGKKINYLTFKENLSDINVRDNIEHTITFDDVEELKNIFKLLGYDKFYYGKKYRRKYKYK DFKIDLDTWDKETYPYPYAEIEGPSEKEIYEFADLLNIPKEDISTLSIAELIKNLKK >gi|281297200|gb|ADDO01000057.1| GENE 32 47166 - 47858 700 230 aa, chain - ## HITS:1 COG:CAC0640 KEGG:ns NR:ns ## COG: CAC0640 COG1768 # Protein_GI_number: 15893928 # Func_class: R General function prediction only # Function: Predicted phosphohydrolase # Organism: Clostridium acetobutylicum # 2 219 3 223 231 211 47.0 8e-55 MIYAIADLHFDFSKEKPMDVFGDNWKDHDKKIISDWKEKVRDDDLVLLPGDISWALKLKD AVDDLNVIDSLPGKKIISKGNHDYWWSSLNKMNNLGFKTIKFLYNNTYEYEDISICGCRG WISKDSLEFTQEDEKIYNREVNRLKISLEQAKNKKIIALIHYPPFNQDHSASDFTKLLTD YNVKLCLYGHLHGQGHKYRYEGELDNVSYKFIASDFLDFKLERIRSWKEK >gi|281297200|gb|ADDO01000057.1| GENE 33 47861 - 50122 1916 753 aa, chain - ## HITS:1 COG:no KEGG:FMG_0702 NR:ns ## KEGG: FMG_0702 # Name: not_defined # Def: putative DNA double-strand break repair rad50 ATPase # Organism: F.magna # Pathway: not_defined # 1 753 1 750 750 150 25.0 3e-34 MLLDKIYLGAFGKFKGKEIDLRQGINIIFAENEGGKSTSHAFIDGIFYGFSKDSLKAKRT DELYEKYKPWQGSDYKGYIELTKDDKYRISRDFSNNSIEVLNLTKGTNISNLAIFKKYSR IEEPGLYFFNMNRHLFHSTFYIRQLESIIDEKASKLLKEKISNFITSNDEKINYHYALEK LEEDLDSYGKPTRTKTKIGSISKRLEEINKERLDLDDKRIEYFKSLEILKKEESALESDK KNLLAANIRDNKDLQRQIKSIEEKIINEKAKAVSINDFQQSVELNREIKKDYLQIDELLH ANYEVFQIDEEMERDFEDLKSYKEKISELNSVNYSKEMEFLSVDIRNSEKKRNFYLFMSL FSILISFLVIFLSIKFHLYPLFISIVFISIYTYLRLVKFRVNKELVERLKVRMEALKNLS IQKTAKKKNFDRLFNQLTDKYHKKDIDDLYNFLKEKVNENDKNRAINEYRKEKSKDIIEK RDKLNKEIEDLENKLNIIFEKYEVTSLRELKDKYENNNIFDLEKSLALKKDLYEKTKIEN IKSEETTQTDLSIKDINSIIDSRKLKISTLKGQINLLEASVNKLKDLEEEKDYLIKELEK IEFKRAYTELAYQRLKDLLLENRNKMLPRLKSKIEEILGQITKEKYKKIIIDDNYNISLY DDENEKYVSIENLSRGTIDQLYFAFRLSLIHILFTDNLPIILDDHFANYDDTRLEMALDY LRDYKQLIIFTSNKREINMLNKMNVDYNLINLR >gi|281297200|gb|ADDO01000057.1| GENE 34 50109 - 51146 862 345 aa, chain - ## HITS:1 COG:lin2325 KEGG:ns NR:ns ## COG: lin2325 COG0420 # Protein_GI_number: 16801389 # Func_class: L Replication, recombination and repair # Function: DNA repair exonuclease # Organism: Listeria innocua # 1 255 4 277 411 84 24.0 4e-16 MKIIHLADVHFNKIYKGDLPIDIVEKISFDQWENFSKVCTFVKNENIDIFLIAGDLFERE YFTLSSMKRLLSILEDIKIPVFIVCGNHDFLDANSLYNNVKIPANVHIFSNKFSYFDLDD LKTRIFGISYDKEYFNISLPQADIRKDYTNILLVHGIVDEGNFLKIDKSYAENFDYVAMG HIHKGGKVYDNTYYSGSLEPLSFKEDGDHGFIFVDFLKNELKFVKTQIKAFRTLDINVRE DSSVSDVFSSIKNQLNDRDLFRIRLDGNYGDIDYLLDYLKSSLDGFYIEIENNIKPAIDI ETISRENENNILGQFISSFDLDNDLEKEAMKIGIKYLMEESDAFR >gi|281297200|gb|ADDO01000057.1| GENE 35 51369 - 51920 620 183 aa, chain - ## HITS:1 COG:PA3846 KEGG:ns NR:ns ## COG: PA3846 COG1335 # Protein_GI_number: 15599041 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Amidases related to nicotinamidase # Organism: Pseudomonas aeruginosa # 13 180 10 176 180 107 33.0 2e-23 MKNFKLNRDDCLLLFVDLQGKILKAIHNNENVLKNSVILAKVSEILNMPTILTAQYPKGL GSNEEVLKKHLKDSKEYGKLSFDCYGDKEIKEAIDSVGKKQIIVCGIESHICVYQTVRSL LGGGYQVFLPMDALGSRKEENHLNALKNLDQMGAVVTNTETILFDLAGIAGTEEFKTLQK LIL >gi|281297200|gb|ADDO01000057.1| GENE 36 51929 - 52831 919 300 aa, chain - ## HITS:1 COG:CAC2951 KEGG:ns NR:ns ## COG: CAC2951 COG1105 # Protein_GI_number: 15896204 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) # Organism: Clostridium acetobutylicum # 1 300 1 308 308 70 24.0 3e-12 MILYCDFNPKLIRKYKVDKINQGEENLIESNRFYASGYGIDMAVFSKKLFQDSKVLMLKG TAIGELIERDLRNLYIETESIKLKDDNIEKLIFQADDNKTIFTSKAPRITMEDKADIQEE FAKQIKGKKAVAISLIDHESLNDDLYESLIKICYKENVHVLVNPSKLEDIKDSKPYLLIL DKKDALKDEKVNYTGDVPAFSKKLIDKGVGIVVVNSNRATVVSTKDKNYRVYLEKISDFK AYNKTLMLAGFAVGLDRDYNIETTIKLAMASSICENYMKFSQVQMSEIKKIMNEVKVEEM >gi|281297200|gb|ADDO01000057.1| GENE 37 52842 - 54527 1930 561 aa, chain - ## HITS:1 COG:SPy1503 KEGG:ns NR:ns ## COG: SPy1503 COG1109 # Protein_GI_number: 15675406 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Streptococcus pyogenes M1 GAS # 1 560 1 563 564 508 46.0 1e-143 MNYLDEYNRWLNSSFTDDKTKEELRAIKDEEEIKDRFYKSLEFGTAGLRGIIGAGTNRMN IYTVSKTAFAIGQVILKKNLKEKGIVIARDVRHKSEEFERISAEIFANLGIKTYVFDSIR PTPMLAYAVRYLKTAAGVMVTASHNPKVYNGYKVYGPKGSQILTDEADEILQEIEKIDYT DIERLDYNEALKKGLICLVDKEFDENYYKKVLDLKIYEGEDIDKDIKIIYTPLNGCGNIP VRHILKERGFKNVTVVKEQENPDPDFKTVSFPNPEFIEVFDIGKKYANKVDADIIIATDP DSDRLRVLGRREKADYYGFSGNELSYLLVDYILKGLKSKNILPQNGAMVRSIVSSDLIED IGKAYNIKCFESLTGFKNICNYANIWEKTDEYKFVFGYEESIGYVVTDFVRDKDGVQIAM LVAEMAAFYKKNNISLYDKLQEIFKEYGYVSEFLTSIVLEGQKGAERIKRMMDKFRNENI SEFGGIRCKEKIDFINGYKDVGPSNVLKFILNDKSWFSLRPSGTEPKIKLYIYTKDKDKN IGDKKINDLKADILQKLENIK >gi|281297200|gb|ADDO01000057.1| GENE 38 54524 - 55000 479 158 aa, chain - ## HITS:1 COG:BS_yjdI KEGG:ns NR:ns ## COG: BS_yjdI COG2606 # Protein_GI_number: 16078271 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 1 153 5 158 159 165 53.0 3e-41 MKKTNVARILDSNKLTYDLIEYNTDGGISGLDVAKKTGEDARCVFKTLVTVSKDKNYYVF VVPSISELDLKKAAKASGEKKIEMIHQKELLPLTGYIHGGCSPIGMKKEFPTFIDSSAKD LDYFFVSGGKVGLQVKINPKDVANLIGAKFFDICKEDL >gi|281297200|gb|ADDO01000057.1| GENE 39 55148 - 55942 681 264 aa, chain - ## HITS:1 COG:CAC2878 KEGG:ns NR:ns ## COG: CAC2878 COG1108 # Protein_GI_number: 15896132 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Mn2+/Zn2+ transport systems, permease components # Organism: Clostridium acetobutylicum # 1 254 2 255 268 146 38.0 3e-35 MEIFHYSYMIKALIVGFIISIVIPLMGIVLVNKKISVIGDALSHVSLAGVMIGILAGTQP IIGAMITCIIATFFMEFIRKNFPGYGEISTAIVMSLGVGLASLISGFINTAANFESFLFG SIITISSFEFYMIVGSSLVVFLIFSYLYKDLMYISFDETSAKLSGVKVERINRIFMFLIA LTISISSRTVGVLIISSLMVLPVASALQFNYGYFKTTVLSAVFGIVFTIGGLFISFYCGL KPGGSIVILGVIILIIVILLKRKH >gi|281297200|gb|ADDO01000057.1| GENE 40 55942 - 56601 265 219 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|225084369|ref|YP_002657150.1| ribosomal protein S16 [gamma proteobacterium NOR51-B] # 6 210 9 213 309 106 32 6e-22 MTDKILQIKNLYFKYQSENILENINLEIKKGDFALLIGDNGAGKSTLLKVILNEIKAYRG EITFPLLNNSYQIGYVPQLTVGNNLNFPITVFELVSLSLYHKVKGFKKLSEKDKKSVRNS LEIVGMSDYENNLYKELSGGQRQRVLIAKAIVNSPSFLILDEPTAGIDYKSKLALFDLLE HFNNFHNISILMVTHELSEVKHLANRIYLIKDKKIEEVK >gi|281297200|gb|ADDO01000057.1| GENE 41 56598 - 57713 1252 371 aa, chain - ## HITS:1 COG:SPy0714_1 KEGG:ns NR:ns ## COG: SPy0714_1 COG0803 # Protein_GI_number: 15674772 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface adhesin # Organism: Streptococcus pyogenes M1 GAS # 24 366 22 315 322 194 33.0 2e-49 MKKIFVILLALLFTACSKPAANNEAKNEESNGKLNVYASVYPIYDFTKKIGGDKINLSML TKPGEEPHHYEPSSDDIKNLSKADLFIYNGAGLESFTDKIIESNPDLKTCQASEGVDLIK ATHDHDHDHDCCENSEDGNHNHDHDCCENSEDANHNHDHDCCKNSDDANHNHNHENENNH NHEAEENHSSHEEEHHHGMYDPHTWLSIKNAKIEMENIKNKLSEIDPDNASYYQKNFDKY AKMCDDLDKEYSQKISVLPNRVMVVSHQAFGYLCGDYGLSQVPIKNISNEDEPDAQTMAQ IIDYIKKNNIKYICVEEMTSTKIADTIKAETGAQIKVLSPVETLTQEQMDKGEDYFSIME NNLKILEEVLS >gi|281297200|gb|ADDO01000057.1| GENE 42 57844 - 58269 386 141 aa, chain + ## HITS:1 COG:RSp0247 KEGG:ns NR:ns ## COG: RSp0247 COG0735 # Protein_GI_number: 17548468 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+/Zn2+ uptake regulation proteins # Organism: Ralstonia solanacearum # 8 135 7 138 151 75 31.0 2e-14 MNEYKKLLKNHGLIVTKGRTHALEILKNSGVPLNVEEVFQKVDRKLVPNFTSLYRILNQL FEAGLLNKTIHQDGINYYEFKSPHHKHFIVCKICGTISEIKHCPMETFEKEVSEETGFTV EGHTVELQGICPKCQKDTNKI >gi|281297200|gb|ADDO01000057.1| GENE 43 58648 - 59394 589 248 aa, chain - ## HITS:1 COG:TVN0442 KEGG:ns NR:ns ## COG: TVN0442 COG0863 # Protein_GI_number: 13541273 # Func_class: L Replication, recombination and repair # Function: DNA modification methylase # Organism: Thermoplasma volcanium # 5 248 96 346 347 136 31.0 3e-32 MTSKITKWEPENFELEMTTHWSFPERGDWATHDAKWRGNWSPYIPRNIILRYSKEKDLIL DQFAGGGTTLVEAKLLKRNIIGLDVNDVALNRCREKIDFEHEGADGKVFLRKGDARNLDF ISDNSIDLICTHPPYANIIKYSENIKEDLSQLKINDFLDEMKKVASESYRVLKKDKFCAV LMGDTRKNGHMIPLSFYVMQVFENAGFKMKEMIIKEQHNCRATGFWKTNSIKYNFLLIAH EHLFIFRK >gi|281297200|gb|ADDO01000057.1| GENE 44 59394 - 60275 796 293 aa, chain - ## HITS:1 COG:no KEGG:Selsp_0626 NR:ns ## KEGG: Selsp_0626 # Name: not_defined # Def: Type II site-specific deoxyribonuclease (EC:3.1.21.4) # Organism: S.sputigena # Pathway: not_defined # 1 291 36 326 328 429 73.0 1e-119 MRKRDFTEWLSNFRNSISDYKYYVDFEKIYRNVDKIKIELNILNSLIGSKDIENDFIKLI KKYPDTIRCIPMLLAVRLNEIYCQDNKGGLLYQFNSLENIEDKEHYYNSYVYFMQETGLF DLLENHIVNNLVDYITGVETGLDSNGRKNRGGHLMENLVEGFIQKAGFSKEENYFKEMYI SEITSKWGIDLSRLSNKGKMEKRFDFVVKTPNMIYAIETNFYASGGSKLNETARSYKTLA MESQGIDGFTFVWFTDGKGWFGAKNNLEETFDIMDKIYNIKELEEGIINEVFK >gi|281297200|gb|ADDO01000057.1| GENE 45 60299 - 61288 871 329 aa, chain - ## HITS:1 COG:slr1803 KEGG:ns NR:ns ## COG: slr1803 COG0338 # Protein_GI_number: 16330320 # Func_class: L Replication, recombination and repair # Function: Site-specific DNA methylase # Organism: Synechocystis # 31 329 2 307 309 268 45.0 1e-71 MDSISIKENKAKIQLNKDKNSYYNDENIDRQIKNISVKPFLKWAGGKGQLLKEIEKIYPF DDNEIKKYAEPFVGGGAVFFDILNKYDLESIYISDINYDLINTYKVIKNNKYELIELLKI IELEFLPKDTQHRKEYYLDKRQRFNDLKLDMNDKDNITKAAYLIFLNKTCFNGLYRVNSK GLFNVPMGSYKNPLICDQENIFAISEKLKNVKILCADFKESESFIDKNTFVYFDPPYRPI TNTSSFTAYTSSSFNDDRQIELAKFAKKMNERGAKILLSNSDPKNTDDKDNFFDDIYSDF KIRRVQAKRMINSNGKGRGNVNELLISNF >gi|281297200|gb|ADDO01000057.1| GENE 46 61639 - 62016 443 125 aa, chain + ## HITS:1 COG:no KEGG:BcerKBAB4_2984 NR:ns ## KEGG: BcerKBAB4_2984 # Name: not_defined # Def: MaoC family protein # Organism: B.weihenstephanensis # Pathway: not_defined # 1 84 1 84 125 78 36.0 7e-14 MRLNKDDEVVYERIFTEKDLKDYATNANFWGKHHEIPNDRGEYLLQGLLTASLTNKIGGD YDILMYRMEFDFLKKAYTGRKLKCVNVVDSLINKGGKNFIDIISDVYDENGDHLLHGFLR GILLD >gi|281297200|gb|ADDO01000057.1| GENE 47 62130 - 64085 1181 651 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 [Rickettsia canadensis str. McKiel] # 24 648 10 631 636 459 44 1e-128 MSSKDNNKFNKNKKNKDPNALYYILAVFLVFTISYFTIPKINRGMDIKQSDYVSFVNMVN EGKVKTVEVRDKTIAFEVVKKDGKTEKYETSVFFDPSLVDRLIAHNVKSSQIYPKEINPI MQLLLSLLSTLFFIGLVWFIFSKFIFKKMGDVGGIGPMNFGKSGAKIYVESTQGIKFSNV AGQEEAKEALREIVDFLHKPKKYTEIGAKLPKGALLVGPPGTGKTLLAKAVASEAEVPFF SISGSEFVEMFVGLGAAKVRDLFKQAEEKAPCIIFIDEIDTIGKKRDGAGFSGNDEREQT LNQLLSEMDGFDAKKGVVILAATNRPDSLDPALLRPGRFDRRIPVELPDLAGRIAILKVH AEKIKKDEDIDYGQVGRSTAGASGADLANMVNEAALRAVREGRDKMSQRDLEESVEVVLA GYERKNTMISASEKRIIAYHEVGHALVAAKQKKSAPVHKITIIPRTSGALGYTMQVDEEE KVLLSKEEAFNKIVTLTGGRSAEEIIFKTQTSGASNDIEQATKIAKAMITRYGMDDDFGF VALEEINNPYLGADASLSCSQQTQYEIDKAVNKLIEEAHAKARKILQDNIKALSAIAEFL LRKETITGEEFMSILKDYSPDEFEDKKESEEIPSSDEDSAEEEKKEDADIN >gi|281297200|gb|ADDO01000057.1| GENE 48 64172 - 64777 625 201 aa, chain - ## HITS:1 COG:BH0036 KEGG:ns NR:ns ## COG: BH0036 COG0353 # Protein_GI_number: 15612599 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecF pathway) # Organism: Bacillus halodurans # 7 200 6 198 198 207 52.0 1e-53 MDNIVGPIEQLIRNLTRLPGIGPKTAQRLAYHIIDMDKVEVEELADSIGTIKSKVKKCSL CCNISDTDPCNICQDNNRDKSTICVVQYPKDVDAMERTHTYKGLYHVLNGFISPLKGRTE SDINFVELIKRVENNKEIKEIIIASSPTVDGDITASFLVEALKAFDLKVTRIGYGLPVGG DLEYYDEITISAALKNRRELI >gi|281297200|gb|ADDO01000057.1| GENE 49 64781 - 65122 197 113 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149916415|ref|ZP_01904934.1| 30S ribosomal protein S21 [Roseobacter sp. AzwK-3b] # 13 111 9 107 114 80 37 5e-14 MARGFGGYPRGGGNMNNMMKQIEKLQKEMADMQENLKNEEISATSGGGAVTATVNGNKEV ISIKLDKEAVDPEDVEMLEDLIVAAVNEALRNAENKVNSKMSKLTGGLNIPGL >gi|281297200|gb|ADDO01000057.1| GENE 50 65131 - 66864 1907 577 aa, chain - ## HITS:1 COG:lin2852 KEGG:ns NR:ns ## COG: lin2852 COG2812 # Protein_GI_number: 16801912 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, gamma/tau subunits # Organism: Listeria innocua # 2 544 3 513 579 337 37.0 3e-92 MYKALYRKYRPLDFNQMIGQEALVMSLKNQIKNNEVSHAYLFSGTRGTGKTSAAKIFARA VNCEHPIDGNPCNKCKSCLSILNNTSVDVVEMDAASNNGVDDIRDLKDKVIYPPTFLKYK VYIIDEVHMLSKGAFNALLKILEEPPSHLIFILATTEKEKIPATILSRTQKFEFSRVSLE NIIKRLKYISQMEGKTLDDEVYQLIAKTSDGAMRDALSVLDQLLSFDSDHISIEKAMDVL GISSSESLFELTSAYLNKDAARAISVIDDIAIQGKDFLSLNNQLLKHMRDLMLVRTLKNP ENLVYSTYLKDFKEQAATCDLDNILDIIDELKDLQVNLKYAENPRILLEMTSIKICNKKN FKSLQLNLDNLSKRVEKLEFLGSLTKESSNNKNIYRQSLEKPNENDIINLNSDMKSENEV LEKSSQSDPLSVKTEENSDYNRSIDEDKKEYHKNSLENIDDQLVDNETPEKSLGINDIKK DWNEILNDLKAVNQVPLVGLLNDAKPLSFENGTLNICYGPGHEFHLKSTNEPKRLEIIKS VLKKRYGMDIDVKISIADDTTLKKLEDLFGKNFVENI >gi|281297200|gb|ADDO01000057.1| GENE 51 67004 - 67300 580 98 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282882936|ref|ZP_06291541.1| ## NR: gi|282882936|ref|ZP_06291541.1| lipoprotein [Peptoniphilus lacrimalis 315-B] lipoprotein [Peptoniphilus lacrimalis 315-B] # 1 98 1 98 98 89 100.0 1e-16 MKNLKKLASIGIASVLMLGMVACQSGNKANANKAQNNAVEAQENADKNKAEANASQAEAN KAKNDAKEEAKNNASTEQAKNNASTEEATNNASTEEAK >gi|281297200|gb|ADDO01000057.1| GENE 52 67427 - 69022 1208 531 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282882816|ref|ZP_06291421.1| ## NR: gi|282882816|ref|ZP_06291421.1| conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] # 1 531 1 531 531 779 100.0 0 MFCPNCGNIVSKDDNYCTVCGKKLKNIKISVENLEDTVNNNRNTTKESTKNVTRIFNPQK LDGIDTTDDIKNIIAAVDKKISKNIRDYENRSNTLDDIAKVKETKSTPIIKKDSPKKDEK LSKNSDVKKSAPQKNIKSNENSFNEFKMSEKELVRRVQEELKKNNFSEKDYENSHDSLDD KKSEAKAEDKNKKKTLKDKWKDFINEDDDEFSIFNDLKKDKSLKTAKERDFHLTNTEDYS NKSIEQTLSVPKISTENEKFLDKIVSKEKRKDKAENKKINNSSKENDKVSPKNHTKSKFW NNEKIKSNIKEEKIKLSKLKDNIEDDFKEKHIDKIENVDTNSFLLNNFKRLSVLNLNFSD FLKNIKSNESLILLGLGILLIFVPMFIGQGKLSFNLIFFLLLKLVFDYIQFSIPLKVAKE KTNLTESSDRFRINVLINWFYTKILLFIGYIITPMGGFFQFNLLKAMTPMPIATIIIILL SPIIALGFYYRDLEKNKIIDFVGWYSSMFILFELIFKLSWFGLNFIFNTLF >gi|281297200|gb|ADDO01000057.1| GENE 53 69081 - 69821 552 246 aa, chain - ## HITS:1 COG:no KEGG:CPR_0812 NR:ns ## KEGG: CPR_0812 # Name: not_defined # Def: hypothetical protein # Organism: C.perfringens_SM101 # Pathway: not_defined # 6 231 36 264 284 66 25.0 8e-10 MLTYFFRHTNENVPFEKFSLAHISIIIFIALILVGIYKNSLKIENSENFKKALRLFLIFF VILEEVIYYYFFIKEPFSWEDLFPLYTCRIAQWAGFFALLFNEKDSFKTVNVYWGCIGGV LALISPDIYPYKFPHATVFCFFAKHFIIIICATIFIFVDNYEFSKGQLKFMYEFANINLL VFLIFGYSTGANAGYLLHSPIFTGFFDSVNKIIYTIFVFAIYNLLIYIIYLLGSKWRKST KEKAAI >gi|281297200|gb|ADDO01000057.1| GENE 54 69947 - 71017 1220 356 aa, chain - ## HITS:1 COG:slr1830 KEGG:ns NR:ns ## COG: slr1830 COG3243 # Protein_GI_number: 16330022 # Func_class: I Lipid transport and metabolism # Function: Poly(3-hydroxyalkanoate) synthetase # Organism: Synechocystis # 4 353 18 375 378 312 45.0 6e-85 MDNFYGIEVDKSLTQTLKSYDKLLKGINNLMNVDYSGFNETPKDLIFEEDKMKLYHYRPL VENINKTPLLIVYALVNKQYMMDLQEDKSIIRNLLKGGQDLYIIDWGYPTADDRYIGLDD YINGYINDCVDLIRKRHKLNKINLMGICQGGTFSYIYTALNQDKIKNLVSLVTPVDFSTN DGLLFKWGKYLDPEVLVDTFGNVPGEFMNAGFVFLKPLDLMIDKYVGLIDYIDDEEKLAN FLRMEQWIFDSPDQVGRAYKEFQIEMYHKNSLIKGEFSLDGKKKVDLKNIKCPFLAILGL KDNQVPPAATRPIMDAVSSEDKELLEVNTGHIGLFVSSRSQREVAPKINDFLNGHK >gi|281297200|gb|ADDO01000057.1| GENE 55 71029 - 72072 837 347 aa, chain - ## HITS:1 COG:no KEGG:Apre_0113 NR:ns ## KEGG: Apre_0113 # Name: not_defined # Def: hypothetical protein # Organism: A.prevotii # Pathway: not_defined # 4 332 46 375 394 138 28.0 4e-31 MENDFKFFDNYMDWQKKSMDAWSKFTENFAKNAGSNMNPFLNYEKMMGSFINQDFFNYTG SPFQVINKIKDSSKIYYDLYKLYKDSFLDNYKESKKVIDEALENFKVSQVKFINNHIFPL LPLDLQDLFKQAYELTNTYKETANIIYGPWMDASENLVDSFMKGALSDPEGFLEFFNIWK ENYKKTYEKLLNAPQFGIDRNTYQVRMQTFDRFIKFIIYFAELNIKLNTVVMDTTEDVVN SFVENVKNDNTPKTFEEFYEFWKSNVSKNFDKLFYSDEFSKFLGNYVDSLMFLKKDLDKL IMDAFKNLPIPTNEDMDSLYKSVYDLKKEIRNLKRELREKDKENYED >gi|281297200|gb|ADDO01000057.1| GENE 56 72277 - 73395 1726 372 aa, chain - ## HITS:1 COG:CAC0702 KEGG:ns NR:ns ## COG: CAC0702 COG1744 # Protein_GI_number: 15893990 # Func_class: R General function prediction only # Function: Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein # Organism: Clostridium acetobutylicum # 50 361 37 342 357 239 44.0 8e-63 MKIKKTLLALILFIAVAMTACGGSKDNASKNTEKENANTNEASQEKSTDEKINVGFVTDE GGLNDQSFNQGVKEGIDKAVKDLGIESSYLESKQAADYVPNLETFVDQEKNLIVGAGFKM GDAITEAAQNYPEINYAIVDVDPTNGGEKEAPSNLLGIMFRAQEPSFLVGYIAGMTSETN KVGFVGGQEGNIIWGFEYGYRAGVDYAAKEKGTKIEVMSQYVGGFTDAQKGKSIALTMYQ NGADVVFHAAGGAGDGVIAAAKDASKDNKTMWAIGVDKDQYEVGPDNVLTSAMKNADVAV YNVIKTMKEGKFEGGKTIELGLADEGAVGIAPTSDKHVKKEILDKIPELTKKIISGDIKV PYNEETYKEYQK >gi|281297200|gb|ADDO01000057.1| GENE 57 73531 - 74547 942 338 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282882846|ref|ZP_06291451.1| ## NR: gi|282882846|ref|ZP_06291451.1| hypothetical protein HMPREF0628_0480 [Peptoniphilus lacrimalis 315-B] hypothetical protein HMPREF0628_0480 [Peptoniphilus lacrimalis 315-B] # 1 338 1 338 338 624 100.0 1e-177 MSEKIKKYIIFAIFIIVLFLSSLTQFFSKDLLWPDDGKDRYFSGIIFQNPTNVEDLVVSR SVENQNNEDLIKYTISFTYTGEDSTARIMGVPARHIFFEEGIFPYYSIANLKGDYEKVNN TLFNAKFRLRDFYDKSKDNFYKPYSVMRIPLEEKKGDYSFTVYYKPENLLFSGGRVVEKT SVFITNARMSDFKESTKTTDSIKEAFNDSGYYVNKLEMIDSSFVSRINILNTLATVVFLV LCLFVVVMIWFNRNNYILYVAPMFIMISTFYRFIDKGSSNLGIIIIYPILGFIGALAGKL ISKDVVMVDKKDLKQSLGLALMYLCFCIIVFIVPRAFL >gi|281297200|gb|ADDO01000057.1| GENE 58 74757 - 75794 1151 345 aa, chain - ## HITS:1 COG:CAC0837 KEGG:ns NR:ns ## COG: CAC0837 COG0687 # Protein_GI_number: 15894124 # Func_class: E Amino acid transport and metabolism # Function: Spermidine/putrescine-binding periplasmic protein # Organism: Clostridium acetobutylicum # 8 343 14 352 354 300 48.0 2e-81 MKKFFVCLFLILFSLTACGKNQAKESINVYNAGEYIDPEILRDFQKETGIKVNYSTFASN EDMYIKVTQSQDKFDVIVPSDYMIEKLIKEDFLQPIDFSKIDNFSQVEDFLKNPTYDKEN KYSVPYYWGTVGIIYNSKEVKDKVDSLDILWNPKYKKQIIMYNSQRDTIGLSLKRLGYSI NSVDPKEIEEAKNELIKQKPLVYAYMDDDGRDVIVQGDANIGVMYSGDALLMIEQNPDLK YVIPKEGSNKWVDAMVIPKNAKNVSGAHKFINYMIKKEVQVKNVKYCIGYTSPVKGVREL LPAEIKNSDVAYPNPHDLENLESFKDLGDRLKLYDRAWTELNATS >gi|281297200|gb|ADDO01000057.1| GENE 59 75791 - 76573 688 260 aa, chain - ## HITS:1 COG:CAC0838 KEGG:ns NR:ns ## COG: CAC0838 COG1177 # Protein_GI_number: 15894125 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component II # Organism: Clostridium acetobutylicum # 1 251 2 252 260 252 56.0 5e-67 MKKLIDKIYLFLVFIFLYAPIFILIVFSFNDSRLRGSWAGFTLRWYKNLFYDPSILSSLR TTLIVAVLATVISTIIGTLAAIGIHELRGIKKDVILNINYLPVLNPDIVTAIALMGFFGL FKLSMGYCTMIISHIVFCIPYVILSILPKLNQLDTNTLEAALDLGAKPFYAIRKVIIPQI KPAILTGALMAFTLSIDDFVVSFFNTGQGVTNLSITIYSMARKGINPSINALSTLMLLIL LILLVIINRRSENKLRELSQ >gi|281297200|gb|ADDO01000057.1| GENE 60 76557 - 77402 637 281 aa, chain - ## HITS:1 COG:CAC0839 KEGG:ns NR:ns ## COG: CAC0839 COG1176 # Protein_GI_number: 15894126 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component I # Organism: Clostridium acetobutylicum # 6 259 11 260 277 256 55.0 4e-68 MKRYAYIYALWGILFIVFPLTLILLYSLNANKDIVNFSFTLNNYSKFFEPLYLKILFVSL GVAAISTLMCLLIGYPIAYIISQFNEKIRNNLIMVFIIPMWMNFLLRTYAWLTLLGRNGL INKALGLIGLGPFNLMYNMKAVAIGMVYNFLPFMVLPIYTVLLKIDKRLIEAAKDLGCNS FMVFLKVIFPLSLPGIYTGITMVFIPAISTFVIPNLLGGNNFYLIGNLIEKQFTFTGDWG FGSAISIVLIVIMIIFMVLPGLLKKNKNKESKGAVAYEKID >gi|281297200|gb|ADDO01000057.1| GENE 61 77411 - 78448 1124 345 aa, chain - ## HITS:1 COG:CAC0840 KEGG:ns NR:ns ## COG: CAC0840 COG3842 # Protein_GI_number: 15894127 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport systems, ATPase components # Organism: Clostridium acetobutylicum # 1 345 1 346 352 411 61.0 1e-114 MEDKFVIELKNISKTFGDNVILKDFNLTIKKNEFLTLLGPSGCGKTTILRIIGGFEWPDK GRVIFNGKDITDDEPYQRKINTVFQKYALFPHLNVFDNVAFGLKIKKLSKKVIENKVKQS LKLVGLNNFQNRNIDSLSGGQQQRVAIARALVNEPEVLLLDEPLGALDLKLRQDMQYELK KIQKQVGITFIYVTHDQEEALSMSDTIVVLNDGIIQQKDDPVSIYNEPKNAFVADFIGES NIIKGKMIEDYKVEFQGHVFDCVDKGFEKNEEVDIVVRPEDIKLVRHEGMINGIVTNEVF YGVHHEMSVDVDGVEWIIQSTIKNEVGEKVGLIIEPDLIHVMRRK >gi|281297200|gb|ADDO01000057.1| GENE 62 78458 - 78997 521 179 aa, chain - ## HITS:1 COG:CAC0841 KEGG:ns NR:ns ## COG: CAC0841 COG1396 # Protein_GI_number: 15894128 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Clostridium acetobutylicum # 1 179 1 179 179 185 53.0 4e-47 MEIGNKIKELRVASGLTQEELATRSELTKGFISQIERDLTSPSVDSLLDILEALGTSPSE FFSKDKNERIIFSEDDYFEYENEDLGFFLQWIVPNAQKNMMEPTLISLKEGGKSKKIAPF EGEVFGYVEKGSICLHYGDKIFELKSGQTFYFEAKREHFLVNNKKREAKVIWISSPPNF >gi|281297200|gb|ADDO01000057.1| GENE 63 79157 - 79852 276 231 aa, chain + ## HITS:1 COG:AF0524 KEGG:ns NR:ns ## COG: AF0524 COG3503 # Protein_GI_number: 11498135 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Archaeoglobus fulgidus # 4 231 2 218 225 75 29.0 1e-13 MKERYNIIDFLRGFTIIHMIIFHLIFDLINFYNFNINMNFYYYQQYICISFVFLAGLSEN FSKNRIKRSIILGISSILISVFSFIFDRSYTIYFGVIHFFFSAGIIFYLFEKLSIKLNKK ILFFVSLLLFIIFKDIYKGSIFFKLIDLPENLYTYNLFILGLPKATFTSGDYFPIIPWIF LYFSGYYFYEFLNIKKRMPSQNIINILGRHSLIIYLLHQVILVAILKLIFG >gi|281297200|gb|ADDO01000057.1| GENE 64 79853 - 80662 1058 269 aa, chain - ## HITS:1 COG:PM0783 KEGG:ns NR:ns ## COG: PM0783 COG1512 # Protein_GI_number: 15602648 # Func_class: R General function prediction only # Function: Beta-propeller domains of methanol dehydrogenase type # Organism: Pasteurella multocida # 1 213 5 198 254 70 28.0 2e-12 MKRRLLFIVVLFPLIFDICFAKNIIDKNKFDYFIYDTQNVLSQESKDYINGLNLDLKNKT GGEIAIVILDSIEEGQAKAYATEIFSELGIGEKGKDNGCLILMATKSRDIQIEPGYGAEG FITDAKCARIYRAMGQVIRESENSSDLDYEAGILEGFNNIIKLYEDEYDVELNAEEGKYS KDVSQSDDFSLSSPEFIILIIVIYIIFSFFINGPKNRKRRYRRNRFGGFDDFGGFGGFGG FGGFGSGSSGGFGGFGGGSSGGGGAGGKF >gi|281297200|gb|ADDO01000057.1| GENE 65 80671 - 81231 869 186 aa, chain - ## HITS:1 COG:TM0961 KEGG:ns NR:ns ## COG: TM0961 COG1704 # Protein_GI_number: 15643721 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Thermotoga maritima # 26 186 30 193 193 157 50.0 1e-38 MRKNKGIAGLIIVIVIAIALVAILGGKYNRLMSLREDVNQSWAQVQNQVKRRADLIPNLT NTVKGYAKHEEETLTKITQARSGIESASTPKELAKADAELTRAINVVVESYPELKANENF LDLQSQLEGTENRIATERKRYNDTVTVYNKSVKRFPTNLIAGILGFDEKEYFEVSEKDME VPSVEF >gi|281297200|gb|ADDO01000057.1| GENE 66 81218 - 82402 1501 394 aa, chain - ## HITS:1 COG:CAC2971 KEGG:ns NR:ns ## COG: CAC2971 COG0301 # Protein_GI_number: 15896224 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine biosynthesis ATP pyrophosphatase # Organism: Clostridium acetobutylicum # 1 387 1 381 384 325 43.0 1e-88 MEKVLSMSLGEIVLKGKNRGQFMSKLLGQIKKAISDLDHGNVYHSMGKIYIDGYRDEKEL IKRCKHIFGIVYICPCIKVKSDLKEIEEAVVSFVGEKLKENPNFKTFKVHCKRAYKSYPM NSMDFNNKLGGAILKNFPLKVDVHNPDFYLYLDFKKEYSYIYTEKIKAYGGLPRGTNGRG LLLLSGGIDSPVAGFLMAKRGIALDVLHFHSYPFTSQRGEEKVIKLAEKISSFSGKMTMY SVNLLNIQKEINKNCPEDQMTLLSRRFMMRIADKLSLDNSYDAIITGENLGQVASQTIDG LKVTDIITRKLVFRPLIGMDKINIIDIAREIGTYETSILPFEDCCTVFLPKHPSLRPEVE EMENSEEALDIDKLVEQAINDMKIIKIGGNHEKE >gi|281297200|gb|ADDO01000057.1| GENE 67 82407 - 83555 1080 382 aa, chain - ## HITS:1 COG:aq_739 KEGG:ns NR:ns ## COG: aq_739 COG1104 # Protein_GI_number: 15606131 # Func_class: E Amino acid transport and metabolism # Function: Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes # Organism: Aquifex aeolicus # 1 379 10 390 406 264 36.0 2e-70 MIYLDNCSTTKTCQESIDIMTKALSEDFANPSSLHSFGLKVEKEIAQSRSSVAKLVGAQA SEIFFTSGGTESNNIAIHGLIKKNKRKGNKIITTAIEHASINDQFINYKNEGLDVKFIGV DKHGNVDIEKLLDEIDENTIVLSLIHVHNELGTINDLKEITKRVKEKNRNVLIHGDGVQA VGKIHVNLKDLGIDTYSISSHKIYGPKGAGALYVRESLDIPSLVIGGGQEKGLRSGTENV PGILGFAKACQLAYENLEQRIDHAGKIKAYLLKLLEENLKDYQINTPKNSSNFHLSVSIK DIRAEVLLHYLEGDEIYISTASACSSNGNHKSKTLKEIGLNDNLMDGTIRICTSKDISFK DIDIFVEKLIKYVNEIRNIMIG >gi|281297200|gb|ADDO01000057.1| GENE 68 83571 - 84164 472 197 aa, chain - ## HITS:1 COG:no KEGG:CLOST_1446 NR:ns ## KEGG: CLOST_1446 # Name: not_defined # Def: hypothetical protein # Organism: C.sticklandii # Pathway: not_defined # 10 197 5 201 201 117 36.0 4e-25 MIDLLRTKSSLIKNGFFSYIFDNKEDAVDYFLHFAKENISFGFAGSKTLETLGIYDILID KGYKCFWHWKDGFKEGLDNCKDADYYLTSANAITSDGSLYFVDRIGNRISSVCFGHKKVF IFIGRNKIVADKAEAVRRAENIAIPLNSRRINNDIFKGLRSDDYVHYDDAANMELFLNAS AKGRDIYVFLINEDLGY >gi|281297200|gb|ADDO01000057.1| GENE 69 84264 - 85163 699 299 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282882795|ref|ZP_06291400.1| ## NR: gi|282882795|ref|ZP_06291400.1| conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] # 1 299 1 299 299 445 100.0 1e-123 MIYNEQRLNENSEKNFLIIETTGLSIKNDVIIAIGIVKNNTIYQFIIEDLKEEIELINKA NKIIRNEEIIAYNGTFEKNFLTYRADIYKISTDFNIKKLSQKIKNFKYLFPLENYSKNNL EEFFKIEGQPVISGKNVGENFKKYLLNNDRNKLLEISKRNRENLIKLKNLYVEVSKYLIK FLKLEFGNLTFEIKNIYLEKNTIIYEGESSFEGNYYRSNKNYTFICNKNFKVELFTHSDI YDKADYCYYLLKKDFKNLNNKSHLKSPSQILILYYKDFLIENIIQVFKKIIETEIENFI >gi|281297200|gb|ADDO01000057.1| GENE 70 85205 - 85429 358 74 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282882874|ref|ZP_06291479.1| ## NR: gi|282882874|ref|ZP_06291479.1| hypothetical protein HMPREF0628_0493 [Peptoniphilus lacrimalis 315-B] hypothetical protein HMPREF0628_0493 [Peptoniphilus lacrimalis 315-B] # 1 74 1 74 74 131 100.0 2e-29 MISNNEKKEFILSHLKGYQKWLSHEELSFIYGLLGSGPAEDSEIVSSIKDIVETLPDERL DKVYNYIKEKGPKE >gi|281297200|gb|ADDO01000057.1| GENE 71 85819 - 87162 1299 447 aa, chain - ## HITS:1 COG:no KEGG:FN1854 NR:ns ## KEGG: FN1854 # Name: not_defined # Def: methylaspartate mutase (EC:5.4.99.1) # Organism: F.nucleatum # Pathway: Metabolic pathways [PATH:fnu01100] # 3 447 6 462 462 354 44.0 4e-96 MRYLLVDVGSTYTKLNLLDTEKIEVIGSSQSYTTVNSDVRVGFYKALEKLKAKCKLEYDE FLGCSSASGGLKVVVVGFSKNLTTYACKTASLSSGARILKEYYYELTSKDLDEIENLKPD ILLLCGGTNSGNTYNIIFNAKAIAKKNYSFPVVCCGNESANNCIRDIFDKSNIRYVFTEN VMPTTNVVNYIPLRKVIAEIFISTITKAKGIDALSKKCKIFLPTPIAVQNAISTYGKVNN ISLLSIDIGGATTDIHSIGKSYWGDENIIAPEIDEPYEKRTVEGDMGMRYSATALYESLG DQVFKNLGYTDAKKRCQERFDNTDFIPIDPDEEKFDQILGYLAAKTALSRHIGKLKKIPT STRYIYKQSGKDLRRAEEFLATGGVLINSKNPYLILKSINALDDSYLKPENPKFMLDKSY ILSAVGLVSKFEPEKAVKFLKKYLKRI >gi|281297200|gb|ADDO01000057.1| GENE 72 87159 - 87785 820 208 aa, chain - ## HITS:1 COG:Ta1477 KEGG:ns NR:ns ## COG: Ta1477 COG3404 # Protein_GI_number: 16082442 # Func_class: E Amino acid transport and metabolism # Function: Methenyl tetrahydrofolate cyclohydrolase # Organism: Thermoplasma acidophilum # 7 207 17 217 217 128 38.0 6e-30 MLKDLSIVEFANETASNSPAPGGGSIAALNAAMAASLLTMVANLTIGKKKYADFSKRAEE IKIECAKYKDLFVEAIDKDASSFNGVMDAMKLPKETEDEKKIRAEKIQEGYKKAIEVPLT LGTKVTELYPYCKELAENGNSNAITDVAVALINIKAASEGAFLNVKINLNSLKDQDYKKE LEEKMEKVAKVIKENDQSIMKVVDEKLA >gi|281297200|gb|ADDO01000057.1| GENE 73 87794 - 89470 2392 558 aa, chain - ## HITS:1 COG:CAC3201 KEGG:ns NR:ns ## COG: CAC3201 COG2759 # Protein_GI_number: 15896448 # Func_class: F Nucleotide transport and metabolism # Function: Formyltetrahydrofolate synthetase # Organism: Clostridium acetobutylicum # 4 558 2 556 556 698 63.0 0 MDYKTDIEIADAAKIEPIEKIGEKIGLKNDDLEHYGKYKAKISWEAINRLNNNKDGKLVL VTAISPTPAGEGKSTVSIGLSQAFNRIGKKSVVALREPSLGPVFGVKGGATGGGYSQVIP MEDINLHFTGDIHAISTANNLVSACIDNHIYQGNALDIDVNNITWNRVVDMNDRSLRNIV NGLGKKTDGVPRQDHFMITVASEIMAVLCLSKDLKDLKEKISKIIVAYTRTGKPVYISDL KIQGAVAMLLKDAIKPNLVQTLENTPAIIHGGPFANIAHGCNSIIATKLAIKTSDYAVTE AGFGADLGAEKFLDIKCRTSGIRPDAAVLVATIKALKMHGGVNKNDLKEENIEALEKGFE NLRRHVENLRKFGLPVVVAINQFAQDTDAEIEKLEKLCKDLGVEISLCQVWAKGGEGAED LAKKLVKNIEKQKSEINFLYDVNDSIEDKLNKIVKDIYGGRRAVLTAAAKKQVKKLVELG LDKLPICVAKTQFSFTDNKNVIGAPRDFDIEIKTVRISNGAGFIVVETSNIMIMPGLPKV PAAENMDIDDKGNIVGLF >gi|281297200|gb|ADDO01000057.1| GENE 74 89519 - 90412 1280 297 aa, chain - ## HITS:1 COG:TM0843 KEGG:ns NR:ns ## COG: TM0843 COG3643 # Protein_GI_number: 15643606 # Func_class: E Amino acid transport and metabolism # Function: Glutamate formiminotransferase # Organism: Thermotoga maritima # 1 296 1 296 304 310 50.0 2e-84 MKRVMCIPNYSEGRDLDKVDKITECFRNKEKIKLIDYQPDKDHNRLVVEVIGDPRAVVEA VIESVKVASEIIDMRTHEGAHPRMGAVDVVPFVPVSEMTTEECVELANEVGKAIGDMGIP VYLYEDAATTKERKNLAKIRKGQYEGFFEKIKDPDWKPDFGPAQMNEKSGCTAVGARFHL VAFNVNLNTDRLEIADAIAKKVRHIGGGLRFVKAIGLELKDKGQVQVSMNLVNFEKTRIY QALEMVKSEARRYGLSVVNTELIGLLPLQALIDSAAYYMQIEDLKAEQVLETLLIEE >gi|281297200|gb|ADDO01000057.1| GENE 75 90455 - 91996 2042 513 aa, chain - ## HITS:1 COG:SPy2089 KEGG:ns NR:ns ## COG: SPy2089 COG2986 # Protein_GI_number: 15675846 # Func_class: E Amino acid transport and metabolism # Function: Histidine ammonia-lyase # Organism: Streptococcus pyogenes M1 GAS # 1 513 4 512 513 661 66.0 0 MIVLNGNNLTLEDLVKIARFHEKVEIDESAKSEVEKSRKFVEEIVEEERVVYGINTGFGS LSRVSIPEEDNAQLQENLIRTHSSGYGNPLSEAEVRASIAIRINSLLKGVSGIRLSTIEL LVAMLNKNVVPFIPEKGSLGASGDLAPLAHMVLPMLGLGKAYYEGELLKGAEAMKRAGLK TIKLAAKEGLALINGTTILTATGALATYDAIELAKIADIAGALSIESARGIIDAFWEELH TIRPHAGNLATAKNMRELLEDSTYVTHTAQLRVQDAYSFRCIPQIHGASKDSIEYVKEKV EIEINSATDNPIVTGEGHVISGGNFHGEPMAQPLDFLAIAVSELGNVSERRIERLINTTL SGMPSFLVKHPGLNSGFMITQYAAAAIVSENKTLAHPASVDSITSCENQEDFVSMGQWAA RKAREVVFNVKRVLATELMIAAQAVDFRREMENGKLHLGKGTQKAYDVIRDFVDFIEQDK DIEIYDELEKATDIIDSGKLLEEVKKSVNLELK >gi|281297200|gb|ADDO01000057.1| GENE 76 92024 - 92497 417 157 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282882912|ref|ZP_06291517.1| ## NR: gi|282882912|ref|ZP_06291517.1| hypothetical protein HMPREF0628_0499 [Peptoniphilus lacrimalis 315-B] hypothetical protein HMPREF0628_0499 [Peptoniphilus lacrimalis 315-B] # 1 157 1 157 157 237 100.0 3e-61 MKFDLPWKDLDGNIYSYIDVKNRKNYVNYIAWFLTILFALIGIFTVYRIGIFIALVLFLT LVYKRYVVVTSRGLEIFYNIFISKSYEIWDWEDIYALTYANDYDYKDLKIIYFTKGDITK RFYFKSEDLQGIILLAKSKSKKIKIFDAAKNKNFIKN >gi|281297200|gb|ADDO01000057.1| GENE 77 92545 - 94077 1776 510 aa, chain - ## HITS:1 COG:FN1422 KEGG:ns NR:ns ## COG: FN1422 COG1757 # Protein_GI_number: 19704754 # Func_class: C Energy production and conversion # Function: Na+/H+ antiporter # Organism: Fusobacterium nucleatum # 42 463 23 443 473 372 46.0 1e-102 MDKSKKTVRLPNLFEAILPVLTMVGLMIYVFNFSDRTYDGAHMPLIIGIIVGSIVGIMCG HTWSDMVAGMIQRLDATLEAILILLTVGLLISSFMISGTIPALIYYGLDILTPKLFLPVG CLLVAVVGLACGSSWTATGTIGIAFMTIGQGLGINPAITAGMAISGAYVGDKFSPLSDTT NLAAGVAQTGLFDHVTAMVSTTGPVFLLALIFYTILGLGSNIGTYDPTIAKGIQDAIIGS FNINPFLLIPILVIVAVCILRVPGLPGVMISVFTGVIFSLIFQEPRSLGEIFSVLHYGPS VETGNEFLDAALAKGGMDHQMWTINLIILAVSFGGILEKCGTIEKLFGNLKKRINSVGGL VLATMLTSIFCDATMCDQFLGIGVPAPLYDDKYDDLGLARNMLSRTLEDAGTLWAVMFPW TACGAYQMRTLGISPFKFFPFAFVNLLNPIYAVITAYLGRNIFWADGAYTNLFGKTKMLK NVPNAPEKIHKYAVSQLEKRRAEGKAPSIR >gi|281297200|gb|ADDO01000057.1| GENE 78 94674 - 95939 1604 421 aa, chain - ## HITS:1 COG:SPy2081 KEGG:ns NR:ns ## COG: SPy2081 COG1228 # Protein_GI_number: 15675839 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Imidazolonepropionase and related amidohydrolases # Organism: Streptococcus pyogenes M1 GAS # 1 420 8 428 428 513 58.0 1e-145 MKADKILYNLEEVFSPKDLGRPLRGKEMNEADILKNAYIAIKDGKILQIGQGDAYKSLQD EHTKMVDLKGCVATPGLIDAHTHLVYGGSRENEFAMKLNGMKYLDILAAGGGILSTLKAT KEASFETLYDKTRNLVEQFMIHGVTAVEAKSGYGIELDTEVKELEVIKKINEDLKVELVP TFMAAHVIAEKYKDDPDKYVDIVIDMMPKIKEKGLAEFCDVFCEKDVFTAEQSKRILEEA RKNGFKLRIHSDEIADIGGTKVASELKVRSAEHLMVISDESIKALAENNVIGNLLPGTTF SLMEDTYAPARKMLENGMAITLCTDSNPGSCPTANLQFIMQLGCFALKLTPIEVFNAVTI NAAYSIDRAKTMGSFEEGKAANISVFEAKNLDYLLYFFATNLCKKVYIDGELVVDQRQLV K >gi|281297200|gb|ADDO01000057.1| GENE 79 96210 - 98219 2605 669 aa, chain + ## HITS:1 COG:SPy2082 KEGG:ns NR:ns ## COG: SPy2082 COG2987 # Protein_GI_number: 15675840 # Func_class: E Amino acid transport and metabolism # Function: Urocanate hydratase # Organism: Streptococcus pyogenes M1 GAS # 9 668 12 674 676 1070 75.0 0 MDNQTLEKAMVVRLDFLPEKKTFEPGIRRAPDRGFRLTKEQTKIALRNALRYIPEEYHEE LIPEFLEELTSRGRIYGYRFRPQGRIWGKAIDEYKGNCLEGKAFQVMIDNNLDFEVALYP YELVTYGETGSVCHDWMQYNLIKKYLEVIHDDETLVIESGHPLGLFKSRKNAPRVITTNG LMIGEYDNLDDWEIAEEMGVANYGQMTAGGWMYIGPQGIVHGTYNTILNAGRLKLGLGEK DNLKGKLFVSSGLGGMSGAQGKAGDIAGAVSIIAEVDISRIETRLEQGWIMKLAESSEEA VNMALEAQKNKETLSIAYHGNIVDLLEYMDEKNIHIDLLSDQTSCHNVYNGGYCPVGLTF DQRTDMLGKDIKKFRELVDATLRRHFEVIKRLVGKGTYFFDYGNSFMKAIFDSGVKEISK NGVDDKNGFIWPSYVEDIMGPLLFDYGYGPFRWVCLSGKHEDLIETDKAAMSCIDPERRY QDRDNYNWIRDAEKNKLVVGTQARILYQDAKGRVAIAHKFNELVREGKIGPVMMGRDHHD VSGTDSPFRETSNIKDGSNVMADMATQCFAGNCARGMSLVALHNGGGVGIGKAINGGFGL VLDGSKRVDEIIDLSLTWDVMSGVARRSWARNEHAMEVSVEFNDEKTGVITLPYLVDDKL IEDAVKNIK >gi|281297200|gb|ADDO01000057.1| GENE 80 98372 - 99568 1571 398 aa, chain + ## HITS:1 COG:CAC0144 KEGG:ns NR:ns ## COG: CAC0144 COG1489 # Protein_GI_number: 15893439 # Func_class: R General function prediction only # Function: DNA-binding protein, stimulates sugar fermentation # Organism: Clostridium acetobutylicum # 1 224 1 226 230 160 42.0 3e-39 MKYQEIVKGNFIERINRFIGKVIIDGKEELVYIPNTGRCEELFIRNALCYLSKNDSPKRK TKYTLTSILKNEILINVDSTAPNNVVEEAIKENKIDFGFEIKSYKREFKFDKSRFDFYLE GENKKAFLEVKGVTLENNGLASFPDAPTKRGLKHIKELSMALDEGYDAYILFLIQMHGPN EFFPNYKRHYDFAKELEMDNQKGVKVLVYDSLVSPNEIKILDKINYNLDHIILRLAKFSD KETIEKIYDDGSKSLHAMGVDQWQGNYKPNLSNMQELLNKEELFVLEDKVPVATAILQTY DSDYEDIRGEYLYGKKYLSIHRFAVAGNQRNKGYARKLLNKIEDLAVEMGLNVLRIDTHK DNYKMQHILRSCGFRFAGVIYFKGKLPRDSFEKPLRIK >gi|281297200|gb|ADDO01000057.1| GENE 81 99573 - 100091 390 172 aa, chain + ## HITS:1 COG:CAC2751 KEGG:ns NR:ns ## COG: CAC2751 COG0454 # Protein_GI_number: 15896008 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Clostridium acetobutylicum # 9 171 3 167 167 104 39.0 9e-23 MNENNKIIFRLCKKSDKEKILKIYDDGSKALNKLGVDQWQGSKKPNLDNLEELLTNKNLY VLESDDIIATALLRNYDKDYDNIDGKWVYEGPYIVIHRFATKSEIHRKGYGKFLFKEIEK FAKNNNIDILRIDTHEENLPMLGLLKSLAFKYRGIIYIDDKDKRLAFEKKLT >gi|281297200|gb|ADDO01000057.1| GENE 82 100088 - 101425 1103 445 aa, chain - ## HITS:1 COG:mll1318 KEGG:ns NR:ns ## COG: mll1318 COG2239 # Protein_GI_number: 13471369 # Func_class: P Inorganic ion transport and metabolism # Function: Mg/Co/Ni transporter MgtE (contains CBS domain) # Organism: Mesorhizobium loti # 7 438 33 464 470 246 33.0 6e-65 MDNISKEIGVIIKGRDEFLANRLFEQYHVVDILEELEDLSDENLFKFLRLCKDVNVAEIF EVCDEEFAVRISKSFNDFQLIEIFSHMKNSDVADLLGYLPTVRRKEILKIMKTSDSNILK MILSFDEDTAGGIMSTNFISLRENLTAQDALNKIKQISPETEIIDEIFITDYMHRLKGYV TLRTILTADDEDLLKDLYEQLNFYVYGRDDQEIAANLFTKYDLTVLPVLNQNKAILGVIT SEDIIPVIEDELNEDMLAMHGVGNEDLDSGIVKSVKSRLPWLIINLLTAFLASSVVKQFE PTISKVVVLSVAMPIVTGMGGNSGSQTLSIVLTSLARGEISLKEDFNLIMKEIILGFLQG AVIGIITAGIFTMWSNNIYLAIILFLSMIGNMIIAGITGFLIPLLLDKFNIDPAVASSIF LTTFTDTCGFFIFLGLATIFLRHLV >gi|281297200|gb|ADDO01000057.1| GENE 83 101433 - 103274 1358 613 aa, chain - ## HITS:1 COG:BS_yjcD KEGG:ns NR:ns ## COG: BS_yjcD COG0210 # Protein_GI_number: 16078247 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases # Organism: Bacillus subtilis # 4 607 138 749 759 251 29.0 2e-66 MELTEKQKLVTLHRDGPALVLAVPGAGKTTILLHRTLNLIKTGVDAKRILTITFSKAATN EMSKRFSKMSSNLNTNFLTIHAFSYKILLDYARVRGKNYKLIEEKKSLKNQVLKNIYISI NNTYPTEDLLDMTANEISLCKNLLLNPSSFENNFNCQTANFQKIFLSYENYKKENHYIDF DDMLTLTYKILKDDAYFKNKYRSYFDFIQLDEGQDTSYVQFLILKLLAKPKNNIFIVADD DQSIYGFRGAKPDELLKLNETYKDLKIYYMEENFRSSKNIVNISNLFIGQNQNRFKKAIC TNNDWKNPVELIKLKNSLDQYEFIRDKLPKLQGSCAILYRNNLSAIGLVEFLERNNIDFN IKDNKNKFFSHFIVRDIIDIIIFSNDLSNLALYQKFYYKLEGYISKRHIAYLKNKVTDNI FKELMAYPNLPPYYLKNISKLASDFKILKKMKLSKALSFIQYEMGYNKYLEENAKRLGEN MNSISEYLFYISLIGENAKDIDEFIGRLKHLQFLLRKPNDSNINLFLSTIHSSKGLEFTN VFMIDLIDGNIPSKSAIDILPDDTLGLEEERRLFYVAMTRTKENLFLIYPYYRNNIKNEM SRFLIELEGCRDK >gi|281297200|gb|ADDO01000057.1| GENE 84 103375 - 104172 712 265 aa, chain + ## HITS:1 COG:no KEGG:FMG_0648 NR:ns ## KEGG: FMG_0648 # Name: not_defined # Def: hypothetical protein # Organism: F.magna # Pathway: not_defined # 1 257 1 258 266 179 39.0 1e-43 MLMTNFLQKRKSVRDFKNKKIPADVLAKIKENMKVIDNLDAMAKFYLFENGSIIYKGLDG KAGYNGVMIEAPHYIGLEFNKDSEINILKSGYLLEKLNTEIVNLDLDTCWITVFAVDDNT KKSLFGENGANIDYLIAIGYGKKKKLFDLAVTQERLSVEEIVSKGSLSEPITAEFLENRG LFDLFSSIRYAPSHKNFQPWRFMIKDESVYAYMVKKDGEDKASLIDMGIILFYFEEMAKT IGINHKWTIELEDKGEYLQVGNFKL >gi|281297200|gb|ADDO01000057.1| GENE 85 104173 - 104346 113 57 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSYENINYSLCNIVLSVVQIPLTKKTILSIKEKAGNENRDCSVSVPILMKRFILLFY >gi|281297200|gb|ADDO01000057.1| GENE 86 104405 - 105358 1434 317 aa, chain - ## HITS:1 COG:MA0664 KEGG:ns NR:ns ## COG: MA0664 COG2878 # Protein_GI_number: 20089551 # Func_class: C Energy production and conversion # Function: Predicted NADH:ubiquinone oxidoreductase, subunit RnfB # Organism: Methanosarcina acetivorans str.C2A # 6 261 5 261 264 186 43.0 7e-47 MDLKSILYPILFLGITGSFFGVILSVASKIFYIKQDPKVIAVRNALPGANCGACGFPGCD GMASAICSGKAPVNGCVIGGNDTAEKIAELMGVNAGNVERNVACVLCQGACGKAKNKYDY HDLVDCRLISDFQKGQKACTFGCCGGGTCVSVCEFDAIHMVNGVAQVDKEKCVACMKCIN ICPKGIIKLVPYKSKTVVKCMSNDVGKIVRANCNIGCISCKMCEKNCPKDAIHVEDNLAR IDYEKCINCGKCVSVCPTGAIFCEYPDRVAKMKEREKERKQKEMEAKKLAAQKAKEETQA EPSTKTATAVLEKEENK >gi|281297200|gb|ADDO01000057.1| GENE 87 105368 - 105946 744 192 aa, chain - ## HITS:1 COG:FN1592 KEGG:ns NR:ns ## COG: FN1592 COG4657 # Protein_GI_number: 19704913 # Func_class: C Energy production and conversion # Function: Predicted NADH:ubiquinone oxidoreductase, subunit RnfA # Organism: Fusobacterium nucleatum # 20 191 21 192 194 193 64.0 2e-49 MLKSIFIILVSTILVNNYVFAQFLGVCPFLGVSAKVDTAIGMGIAVTFVVVLASALTWMI QIFILNPLNIAYLQTIAFILVIASLVQFVEMFIKKASPALYTAMGVYLPLITTNCVVLGV AVLNIQKEYNLIETIFSGFGASVGFTLALLFMSCLREKLAIGNVPKALQGVPIALVSAGL MALAFSGFGGLV >gi|281297200|gb|ADDO01000057.1| GENE 88 105946 - 106545 630 199 aa, chain - ## HITS:1 COG:TM0247 KEGG:ns NR:ns ## COG: TM0247 COG4660 # Protein_GI_number: 15643019 # Func_class: C Energy production and conversion # Function: Predicted NADH:ubiquinone oxidoreductase, subunit RnfE # Organism: Thermotoga maritima # 1 197 1 193 200 161 44.0 7e-40 MKLSKVFTDAMLKNNPTFMQLIGLCSVLAITNNVINSVSMGIAVTFVLIMSNGVVSALRN VIPDKIRIPCFIVVIATFVTLVQMILQAYATPIYLALGIFLPLIVVNCCILGEAEGFAYK NKLIPSLVDGLGTGVGYTLAVLIMGVVREFFGYGSLLNIQIIPKEIYPGIGILAAPAGAF ILLGFVIAAFKNLLTRRAD >gi|281297200|gb|ADDO01000057.1| GENE 89 106555 - 107142 889 195 aa, chain - ## HITS:1 COG:FN1594 KEGG:ns NR:ns ## COG: FN1594 COG4659 # Protein_GI_number: 19704915 # Func_class: C Energy production and conversion # Function: Predicted NADH:ubiquinone oxidoreductase, subunit RnfG # Organism: Fusobacterium nucleatum # 4 193 5 174 177 58 29.0 5e-09 MKEHIKFGLILLIFCVFSAGLLSVANGFTAPIIAQAELEKALASYESIFGDAADDFKEYD QDKLNKIKEENKAIDKIFIAQKDGKVVGYGINFKATGFGGDMVNAIGILLDGDKIAGFRN ISNQETSGFGTRITTEEYYPLYEGKSAAGPVELSPNPDKENQVPWLTGATVTSKGVLAGD NAVIDVYNKYLKEGK >gi|281297200|gb|ADDO01000057.1| GENE 90 107143 - 108135 1100 330 aa, chain - ## HITS:1 COG:TM0245 KEGG:ns NR:ns ## COG: TM0245 COG4658 # Protein_GI_number: 15643017 # Func_class: C Energy production and conversion # Function: Predicted NADH:ubiquinone oxidoreductase, subunit RnfD # Organism: Thermotoga maritima # 17 330 6 317 318 229 44.0 7e-60 MENNLKKEVTGSEYFVSLAPHIRSNDTVRKIMLDVIIALVPAIIGSVYFFGMRSLFLICV SSLACVLTEYVTQKLLKKPIQIGDLSAVVTGILIAFNVPITMPVFELIFGDIFAILIVKE CFGGIGFNFMNPALAGRLVLMASWTKRMTDYLSPEMVKNGVSSLSQVDMVSAATPLKLIG SGAYEKLPSLFNMAIGNIGGVIGETSSILLLLGFLYLVIRKVISVQIPVIYIGVCAITLV ILGIPINVIPYEILAGGLILGACFMATDYATNPITKKGRIIFAIGCGFLTALIRVKASLP EGVSYAICLMNICTPVIDKFTRTQAYGEVK >gi|281297200|gb|ADDO01000057.1| GENE 91 108145 - 109485 1429 446 aa, chain - ## HITS:1 COG:TM0244 KEGG:ns NR:ns ## COG: TM0244 COG4656 # Protein_GI_number: 15643016 # Func_class: C Energy production and conversion # Function: Predicted NADH:ubiquinone oxidoreductase, subunit RnfC # Organism: Thermotoga maritima # 6 445 18 451 451 327 40.0 3e-89 MSSRNLTFSIGGVHMDEHKTLTEKIAIERMPDPEIVYIPMSQHIGAPNTPTVKKGDKVKV GQIVGKSDAFISAAVHASVSGEVIGIEKMYTADARYCDCVIIKNDGLGEQVEFKPFLDYR EHPVDDLIPFVKDMGIVGMGGAGFPLHAKLKGENPPLDECIINGAECEPFLTCDHRIMLE RTEEILEGLDIFSFFYNQKASYMAIEENKPDAIAKMEEVISKHPNWSHLKVVGCQTKYPQ GDSKRLSEAVIGRIVPQNGVTNDVGLFLTNVGTTLAFSEAMVKGKPTYERVITVSGSGIK EPKNILVKIGTPVGEILDFCGGVVEDYKEIICGGPMTGKSVFNLNSPITKTTSGILVFTD KEENSIEESPCIRCSRCVDHCPANINPTDINAAILRGRLDICEELHADQCMECGICSFVC PAKRHLSASTKLAKREIKMAQRAKRK >gi|281297200|gb|ADDO01000057.1| GENE 92 109824 - 110444 805 206 aa, chain - ## HITS:1 COG:BH1275 KEGG:ns NR:ns ## COG: BH1275 COG0572 # Protein_GI_number: 15613838 # Func_class: F Nucleotide transport and metabolism # Function: Uridine kinase # Organism: Bacillus halodurans # 1 206 1 206 211 257 62.0 1e-68 MKNKTLLIGISGGTGSGKSTVTKKLVELIKEENVAVIEEDSYYKDQSNISFEERVKTNYD HPFAFDNKLLIEHLKDLKSGKSIEKPLYDFELHNRKKETLLVEAKEVVILEGILILSEEE IRALLDIKVFVDTDSDVRIIRRILRDIKERGRSLDSVIYQYMKTVRPAHLQFIEPSKKYA DIIIPEGGYNDVAIDLIYQKIKSIIE >gi|281297200|gb|ADDO01000057.1| GENE 93 110434 - 111666 1439 410 aa, chain - ## HITS:1 COG:CAC1687 KEGG:ns NR:ns ## COG: CAC1687 COG0826 # Protein_GI_number: 15894964 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Collagenase and related proteases # Organism: Clostridium acetobutylicum # 1 403 1 401 406 454 55.0 1e-127 MDKIELLAPAGDINKLKTAIEYGADAVYLGGESFGLRKASKNFTLDKIKEGADFAHERGK KIHVTLNIIPHNKDIVGLEEYVKDLEKIGVDALIVADPGMFMRIHEAAPKLPIHISTQGS VTNSSTVSFWQKMGAQRVVLARELSLKEIKEIIGECGNKIDIETFAHGAMCMSYSGRCLL SNYMTGRDANMGDCAQPCRYKYYLMEEKRPGEFFQLEEHDEGTFIMNSKDLCMIEHIPDL IEAGIKSLKIEGRVKSEYYLATVVRSYRMAIDKYYEDPENYKFDPYLLEEIKKVSHRDFT TGFFYNKANENSQVYETNSYIRGYDFIGIVLDYDENSKIATVEERSRVFKGTDVEIFGPG IKDFKLKLDYMTDEKDNEIDVANKAKQIFKIKSQYPLKKGYLIRRRADEE >gi|281297200|gb|ADDO01000057.1| GENE 94 111659 - 112309 565 216 aa, chain - ## HITS:1 COG:CAC1686 KEGG:ns NR:ns ## COG: CAC1686 COG4122 # Protein_GI_number: 15894963 # Func_class: R General function prediction only # Function: Predicted O-methyltransferase # Organism: Clostridium acetobutylicum # 1 213 1 211 216 182 45.0 5e-46 MTNVNYDYIENYIRSLIVDKDEKLKKLREYAKDNHVPIVEEETESLIKFLISTKKPKSVL ELGTAIGYSAISFTKSSPFIEKYISVEIKEEMYKIAMENIKDFSLEDKIKVFLEDAYVFL NKTRDSFDLIFIDAAKGQYENYFAEAINHLNKDGLIICDNVLFKGMIANDDLVIRRKITI VRRLREFLEKIEKNDEFISSIVPIGDGLLLVRRANG >gi|281297200|gb|ADDO01000057.1| GENE 95 112427 - 114088 1954 553 aa, chain - ## HITS:1 COG:CAC1683 KEGG:ns NR:ns ## COG: CAC1683 COG0595 # Protein_GI_number: 15894960 # Func_class: R General function prediction only # Function: Predicted hydrolase of the metallo-beta-lactamase superfamily # Organism: Clostridium acetobutylicum # 2 553 3 555 555 649 57.0 0 MKNSNKLKIIPLGGLHEIGKNMTVIEYRDDIIIVDCGMTFPEDEMLGIDVVIPDVTYLVE NKNRIRGLVLTHGHEDHIGAIPYVVKKLDMDIYGTPLTIGLLENKYKEHNLSKKRLHVVN AGDTVKLGKMEVEWIRVDHSIPDSTALAIKTPLGYVYHSGDFKIDMTPISGKPIDLARIS EIGRKGVVAMIGESTNVLREGYTMSESKVGETFNRLFMQLTENRIIIATFASNVHRVQQI INSAEKYGRRVVLSGRSMVNVTETAIRLGQLKVKKGTFVDIRDMSKYDDSELVLITTGSQ GEPMSALTRIAYGEHRKIRLTPNDAIILSANPIPGNETDVSKVINRLLESGAEVIYETLS EIHVSGHACQEELKLILNLVNPKYFIPAHGEVRHQMKHAEIAEQMGIKPENIFIMENGNC LEIGQDGAKLVGDVPSGNVLVDGLGIGDVGNIVLRDRKHLAEDGLVIVVVSISSSGEIIS GPDIISRGFVYVRESGDLIEDSKSVVKKVLDSSTKKQLKDWTTLKTEIREELKSFIFQAT KRNPMILPIIMEV >gi|281297200|gb|ADDO01000057.1| GENE 96 114072 - 114539 504 155 aa, chain - ## HITS:1 COG:SA1329 KEGG:ns NR:ns ## COG: SA1329 COG0735 # Protein_GI_number: 15927079 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+/Zn2+ uptake regulation proteins # Organism: Staphylococcus aureus N315 # 1 146 1 146 149 134 43.0 8e-32 MELNALKVKDILKEHGYKYTWQRDTVFKVFVDHVKDHLTTEEVYKFISKDNPEIGIATVY RTLQLFHKLGILDQITFEDNIVRYELRLSSTGHRHHHLICLNCGKITEVNVDKLEAIENE ITTKYKFKIIDHSLKFIGYCEDCQKKLGDVDEKQQ >gi|281297200|gb|ADDO01000057.1| GENE 97 114548 - 114805 380 85 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282882940|ref|ZP_06291545.1| ## NR: gi|282882940|ref|ZP_06291545.1| conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] conserved hypothetical protein [Peptoniphilus sp. oral taxon 836 str. F0141] conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] conserved hypothetical protein [Peptoniphilus sp. oral taxon 836 str. F0141] # 5 85 1 81 81 130 100.0 4e-29 MGVMMEKTVFYDEKGRACEFIIDAKFSIDNTSYVAMHPAEDEDSYTYILKVFTDKNGEEA LKGIDDEELEEASKVYEELLNENLQ >gi|281297200|gb|ADDO01000057.1| GENE 98 114771 - 115214 486 147 aa, chain - ## HITS:1 COG:lin1537 KEGG:ns NR:ns ## COG: lin1537 COG0816 # Protein_GI_number: 16800605 # Func_class: L Replication, recombination and repair # Function: Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) # Organism: Listeria innocua # 3 137 2 138 138 117 44.0 7e-27 MNRVLGLDVGEKWIGVAISDETFTIATPLETIERTSNKEAYDKIHDLIEKYDVKKIVVGL PKNMNNTLGPTCQMVQKFSEKLKNKFRLELVYVDERMTTLMAKDVLMEASVRRENRKKYV DKIAAAFILKTYMDSSDGGNDGKNSIL >gi|281297200|gb|ADDO01000057.1| GENE 99 115273 - 115530 324 85 aa, chain - ## HITS:1 COG:CAC1679 KEGG:ns NR:ns ## COG: CAC1679 COG4472 # Protein_GI_number: 15894956 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 5 82 6 83 86 81 51.0 4e-16 MDQKDTNTQVFEKQKLERSRIKEVLKTVFNALEEKGYNPIDQIIGYILSGDPTYITSHDN ARSIIQDIERDELLKEMLKVYLERI >gi|281297200|gb|ADDO01000057.1| GENE 100 115577 - 118201 2943 874 aa, chain - ## HITS:1 COG:CAC1678 KEGG:ns NR:ns ## COG: CAC1678 COG0013 # Protein_GI_number: 15894955 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Alanyl-tRNA synthetase # Organism: Clostridium acetobutylicum # 5 874 1 876 881 843 51.0 0 MRCGMKNLGLHEIRKEFLSFFEKKGHKVLPSFSLIPKNDKSLLLIGAGMAPMKKFFTGEA TPPGKRVTTCQKCIRTGDIDNVGKTDRHATFFEMLGNFSFGDYFKKEVIPWAYEFLTVNL EINKDDLWVTVYKDDDEAFNIWKNDIGIAEDRIIRLGKEDNFWELEVGPSGPCTEIYVDR GLKYGSIDERPGGEGDRFIEVWNLVFTQFDKDEKGNYTPLSHPNIDTGMGLERIATVLQG TNNIFEIDAITEIINEIEKISGYKYGTDKKLDVSTRVITDHIRAITFLVGDTVRPSNEGR GYVLRRLIRRAARHGRLLGIKTTFLYELCDFIIKSWGENYKELVENSQRIKDVIKGEEEK FQMTIESGMNILDSYIEKLKSSNEKILSGEDSFKLYDTYGFPPDLTKEILTEKGFEMDMD GFNDYMDKQKKRARNAHKDTNIGWDSHTDESVFTKFKNEFVGYEEDKCQANIIGIFKDYN EVQNIGPEEKAVLILDKTPFYGEGGGQVGDTGYIDGDDFKCRVIDTKKTREGLHLHIVEV LDGEVTKSPCFAEIDVVRRNNIRRNHSVTHLLHKALKEILGDHVNQAGSLVEADRLRFDF THYQAMSQEEIKKVEDRVNQKIFEALSVTTTVTNPKHAQELGAVGLFEEKYGDIVRVLSM GDYSIELCGGTHVRNTSEISMFKILSESGVSSGVRRIEGVTGPAVYKMLNDTLNLRDEIA HELKANKTDILQKLSSSLNEIKKLNKAIDSLKHSSDKDELSNILDEVKEKNGINYLTHKF KDKDVNSLRDIADMVRNKLNSVVVLLATENDGKLNFVCALSKDLVSNGYSAGKIIKEVSK VCGGGGGGRADMATAGGRDLGKVSEALKTLEGLI >gi|281297200|gb|ADDO01000057.1| GENE 101 118529 - 118921 348 130 aa, chain - ## HITS:1 COG:all4955 KEGG:ns NR:ns ## COG: all4955 COG1132 # Protein_GI_number: 17232447 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Nostoc sp. PCC 7120 # 7 125 480 598 606 106 40.0 1e-23 MDIIEELIEKEPKDIDTQLGFWFEDGKQISIGQWQKVALSRAFVRDADLYFLDEPNAALD PISEYQMAQMYKEIFKNKIGIVIVHKFNHYVDKADKIVILKDGVISGVGTHNELIKNSEE YSELYKMSVE >gi|281297200|gb|ADDO01000057.1| GENE 102 118896 - 119021 177 41 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282882804|ref|ZP_06291409.1| ## NR: gi|282882804|ref|ZP_06291409.1| conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] # 1 41 1 41 41 65 100.0 1e-09 MKNKIEFSADGRDIYRFFTVVFILTLIIGIATAYGYYRGIN >gi|281297200|gb|ADDO01000057.1| GENE 103 119100 - 119210 95 36 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLRRKAGVLKLSTIEDDLFSNKMDRHYRWYTKTHFV >gi|281297200|gb|ADDO01000057.1| GENE 104 119275 - 120390 520 371 aa, chain - ## HITS:1 COG:PAE1905 KEGG:ns NR:ns ## COG: PAE1905 COG1266 # Protein_GI_number: 18312958 # Func_class: R General function prediction only # Function: Predicted metal-dependent membrane protease # Organism: Pyrobaculum aerophilum # 220 326 13 120 159 70 36.0 4e-12 MNKYEDFDLDMKVTGEKIMEDKIEFSADGRDIYRFLTIVFILTLIIGIATVYGYYIGSDI RMAGYVMMLIPALSVILTVKWDKTKVYPKKIFGFYQVTAFVIFLYVVISIFMGIDLPSDL GIVGGLFNGESFIGNILSIIVWLTNFFLIFFICENNQMEENKELMKLWKLSDFNFKKIIQ YTCYFIVLENIIIIVAEVLCGNIDFVLYTLDYKFWLKEVIVIPLVFFHVLVYFGEEYGWR FFLQPRLQKKFGKIKGVILLGVIWGIWHLPIILFYCSTPENFFYAVTHQITGCIFLSIVF AYFYEKSGSLWCVVLLHFMTNAIAGIVAAKQGGIQELYSGDWMDLGVSFAVWTCVSIFFL KTDVFTEKKLN >gi|281297200|gb|ADDO01000057.1| GENE 105 120404 - 121945 1159 513 aa, chain - ## HITS:1 COG:no KEGG:GTNG_0266 NR:ns ## KEGG: GTNG_0266 # Name: spaB # Def: SpaB # Organism: G.thermodenitrificans # Pathway: not_defined # 1 495 521 1032 1046 149 28.0 5e-34 MPSKGRFTNLLNSQRNYPYTLALSMPFDNNSEYILLADLVCGMTENNRMYLKSISKNKLC KMITDNMLNPQINSKLFNLIKDISNDENELGIVNRLALLSMNKYTYTPEIFVEDIKISSE KWLFRENLSDEISYMDFVNSFKQFSKRYNLPEYFYMCKNDNLLLLKANKDITMEILYKEY KKTRILELSAIEADLFNNKIARDIYGNSYALECIFSFYSTEKNYKNKDKIEQITLKENIG IQNKNRILAPFEDGWVYLKIYSPEEMENDFSIMLENEKRKLFIDKFFFIRYFDETGRHIR LRIKYKNAKQAFDKFSYVKDWLSKVKNIDILRTYTINEYHRENNRYGGADLIEFIENIFF ENSEFVIRTIANNDMTDSKVVKKVYFLVVSYFLGQLVKDKNEMYELLDKVTNKNSYRKEY KVKRKEYMKILDGILESVQRSSIVDSAMSEISSKRNLTNDISDIRLSLIHMCCNRLNGTR EFESYTYGILRHPLYDCIQRDKKLKIINSEQSE >gi|281297200|gb|ADDO01000057.1| GENE 106 121946 - 123298 1059 450 aa, chain - ## HITS:1 COG:no KEGG:Clocel_4257 NR:ns ## KEGG: Clocel_4257 # Name: not_defined # Def: lantibiotic dehydratase domain-containing protein # Organism: C.cellulovorans # Pathway: not_defined # 3 431 50 492 1044 142 28.0 3e-32 MLEALYISSPSLYHAILKIGEDDKKDQATFISLYKYLIRASSRTTPFELMANVALGSFSS DDKSCIEKLNSTDKKILVSYSWIYKLVDELQRDQNVLDRISVVWNKSTYVTSSRIRNPNF VNQGVNRLNEHKNTSIRFTKLIQIIKDSTVSFEKYSKLIGIVDNYYKNVPREKIIDTINL LIEKEYLLTELRIPAYCENPILYILSVLKKNNLNEDLQAKLLEIINEIKNCEKFGGGINF LKKITNIMKKIYKNELYLNVNTGMNLKSCELPISIKNKLENFVEVIRSFSVESRTFSSLK DFKNRFQEEYGTGVEVPLIQLLDPAGFNGLSYYLENQYNPSSQDTKITNIVDNKVQEALF NGEKRVYLYKDDFKNLVLNEQANFSKSFDMNIMIYKDDEIKMKIGANFGANEAGKSFQRF SGVFKEDKFKKYNKIYEYAKGDDYLYVDLI >gi|281297200|gb|ADDO01000057.1| GENE 107 124176 - 124721 715 181 aa, chain + ## HITS:1 COG:no KEGG:GWCH70_0639 NR:ns ## KEGG: GWCH70_0639 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_WCH70 # Pathway: not_defined # 8 173 2 160 174 86 39.0 4e-16 MMTTSKSSTKVLVTSAILMALGTVLHTIIPSVGIKPDFMLACMFVSLILTNTNKEMAVIG IVAGIITAMTTGFPAGQIPNLVDKALTTIVFGIFLRALQKRGDLKFYHYGILFFLGTMFS GSVFLTVCLLMGRLLGLSEVIQIFQGGLIPMFVAVVFPTACANVVFGTLMVKIIQLMKKT R >gi|281297200|gb|ADDO01000057.1| GENE 108 124860 - 125150 321 96 aa, chain - ## HITS:1 COG:L193291 KEGG:ns NR:ns ## COG: L193291 COG0607 # Protein_GI_number: 15672766 # Func_class: P Inorganic ion transport and metabolism # Function: Rhodanese-related sulfurtransferase # Organism: Lactococcus lactis # 1 95 26 120 125 70 40.0 9e-13 MEKMDVNEIEKIEKPYILDVREKFELLETGTIKGAHHIPMMQVFESLNKIPKDKKIYVLC RSGRRSEMVCQELSELGYDTVNLEGGIINYKGKLEK >gi|281297200|gb|ADDO01000057.1| GENE 109 125188 - 125562 560 124 aa, chain - ## HITS:1 COG:PAB0825 KEGG:ns NR:ns ## COG: PAB0825 COG0251 # Protein_GI_number: 14521450 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation initiation inhibitor, yjgF family # Organism: Pyrococcus abyssi # 2 124 4 126 127 140 60.0 4e-34 MKVIQTQKAPAAVGPYSQAIEVNGLIFTSGQLPIIPESGELINDDIKKATARSLENIKEI LQVAGSSLDKVVKVNIFLKDMNDFSSVNEVYSEYFTTNKPARSCVEVSKLPKDGIIEIEA VAEK >gi|281297200|gb|ADDO01000057.1| GENE 110 125564 - 125932 561 122 aa, chain - ## HITS:1 COG:lin1521 KEGG:ns NR:ns ## COG: lin1521 COG0799 # Protein_GI_number: 16800589 # Func_class: S Function unknown # Function: Uncharacterized homolog of plant Iojap protein # Organism: Listeria innocua # 1 104 1 104 118 102 49.0 2e-22 MKVEDKLRIIKDSCKEKKGIDIKVLDIKGLSSIADYFVIVSGNSVRQVSALADEIEEKMD EKGINLENIDGKTTSRWILLDYGDIIVHVFHKDEREYYDIERLWSKDEEENGNFKLKEKE DK >gi|281297200|gb|ADDO01000057.1| GENE 111 125946 - 126818 950 290 aa, chain - ## HITS:1 COG:CAC1264 KEGG:ns NR:ns ## COG: CAC1264 COG1316 # Protein_GI_number: 15894546 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Clostridium acetobutylicum # 13 288 14 305 404 127 31.0 2e-29 MKSFFKAFFTTIFIVVILGAGLIGLYLYSLSKNEDAKNLNDFQFLVLGVDSLDSKKAENT RSDTIMVVNFNLENNFLNIISIPRDTYAEIQGYKKQKINHSYAYGGSELTLDSVNKLLGT DIKYYMTIDYKFVMDIVNAMGGVEVNVPLDMDYDDPTADPPLSIHIKEGQQVLKGQDAVG FLRFRKGYKSGSDLERLGSQQAFLAALFSQMKNPKTLVKAPLLYKAYLSDTQNNIPKSLL LKLAVSGSRLSMENVKATTLPGYPKYINKTSYFIMDENQAHELLKATNFK >gi|281297200|gb|ADDO01000057.1| GENE 112 126815 - 127381 760 188 aa, chain - ## HITS:1 COG:CAC1263 KEGG:ns NR:ns ## COG: CAC1263 COG1713 # Protein_GI_number: 15894545 # Func_class: H Coenzyme transport and metabolism # Function: Predicted HD superfamily hydrolase involved in NAD metabolism # Organism: Clostridium acetobutylicum # 3 186 4 187 189 143 42.0 2e-34 MDYKKYENNILERVGEKRYKHMLRVAQSAKMLAQIHKADVEKAELAGYLHDCAKLKNKED YPRLCQEFGLSLSQDMKKAPAIIHGFLGAKLAEKLYEIKDIDILNAISYHTTGRENMSTL EKIIFLADYIEPKRDFPQAKQAREIAKVNLDKAMFYVLDENIKNLIELKNYIALDTIKAR NYYLEKNE >gi|281297200|gb|ADDO01000057.1| GENE 113 127383 - 127985 521 200 aa, chain - ## HITS:1 COG:Cgl2301 KEGG:ns NR:ns ## COG: Cgl2301 COG1057 # Protein_GI_number: 19553551 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinic acid mononucleotide adenylyltransferase # Organism: Corynebacterium glutamicum # 3 200 10 204 218 137 35.0 1e-32 MEKIGILGGTFNPIHYGHLMISEYLRDELNLDKVIYVPTGYSPHKINSISADIRYKMVEI AIKNNDNFQISDVEAKSGEISYSVNTVKKLKENHPGEYFFLIGSDTIFQLKTWRKLEELS KEVHFVAALRPEYLEIDKIDEEIKYLKKNFNTQITIINGPLYQVSSTELRDRIKTKKSVR YLIPDEVIRFIRENNLYRDE >gi|281297200|gb|ADDO01000057.1| GENE 114 127987 - 128280 209 97 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|212638657|ref|YP_002315177.1| Predicted RNA-binding protein containing KH domain, possibly ribosomal protein [Anoxybacillus flavithermus WK1] # 1 93 1 93 97 85 40 2e-15 MLRGKDRSYLKSLANNLDPLVQIGKFGLSESLFDQLDKSLEDHELVKIKVLKNSPVEAKE IVQEILEKTGAEFVQQIGSKLTIYRQSKENKKIEFGE >gi|281297200|gb|ADDO01000057.1| GENE 115 128290 - 129555 1655 421 aa, chain - ## HITS:1 COG:CAC1260 KEGG:ns NR:ns ## COG: CAC1260 COG0536 # Protein_GI_number: 15894542 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Clostridium acetobutylicum # 1 420 1 423 424 407 52.0 1e-113 MFIDSAKIRLKAGRGGDGAVAWRREKYEPAGGPHGGDGGRGGDVIIKADEGLHTLMDFRY KREYKAQNGENGMNKLKYGKAGEDIILKVPVGTLVKDEETGGVIYDFKNKDDEFVICHGG RGGHGNAKYKTSTRRSPNFAQAGTKGEERSVILELKLLADVGLVGFPNVGKSTLLSQVSK ARPKISNYHFTTLTPNLGLVSLGPEESFVLADIPGLIEGASQGIGLGDEFLKHIERTGVL IHVLDISGSENRDPLEDFYKINEELYNYNEKLRDKTQIIFANKMDIPSSKKNLEKLKKAL SSKYQIIEGSAATGENVKLLMQKAYQLVQEKGIDYKTYDEAYVENKVREEAITVRKENDD YIVEGPYIDKLMRSTNFNDYESLKYFQENLRKNNVIEKLKSLGIEEGQSVNIGGYEFEFF N >gi|281297200|gb|ADDO01000057.1| GENE 116 129704 - 130000 332 98 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|28211678|ref|NP_782622.1| 50S ribosomal protein L27 [Clostridium tetani E88] # 1 96 1 95 101 132 70 1e-29 MIKFNLELFSSKKGVGSSKNGRDSNAKRLGVKKGDGSYVLAGSILVRQRGTKINPGENVG RGGDDTLFAKVDGKVSFVTKGKGGKKYVNVFQEDVELA >gi|281297200|gb|ADDO01000057.1| GENE 117 130002 - 130319 438 105 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282882950|ref|ZP_06291555.1| ## NR: gi|282882950|ref|ZP_06291555.1| putative ribosomal protein [Peptoniphilus lacrimalis 315-B] putative ribosomal protein [Peptoniphilus lacrimalis 315-B] # 1 105 1 105 105 184 100.0 2e-45 MTKIKFFKEKDYYYGFKASGHADGGEYERIVCAGISALTETFYFSLIELLGFRDEDIKEE VSDGFLSIKICENYIDDKVQFAFKYLILGLKKIDETYPRYLKLEV >gi|281297200|gb|ADDO01000057.1| GENE 118 130319 - 130624 335 101 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227902335|ref|ZP_04020140.1| ribosomal protein L21 [Finegoldia magna ATCC 53516] # 1 100 1 100 102 133 59 5e-30 MYAVIETGGKQYRVCQGDKIKVEKLDIKEGEKVTFDKVLVISDNGIKVGKPYLEGAKVEG KVLLQAKDKKVVVYKYKAKKNQRNKKGHRQPFSLVEIENIG >gi|281297200|gb|ADDO01000057.1| GENE 119 130782 - 131780 1135 332 aa, chain + ## HITS:1 COG:MA3252 KEGG:ns NR:ns ## COG: MA3252 COG2423 # Protein_GI_number: 20092068 # Func_class: E Amino acid transport and metabolism # Function: Predicted ornithine cyclodeaminase, mu-crystallin homolog # Organism: Methanosarcina acetivorans str.C2A # 1 327 1 320 326 186 33.0 8e-47 MKILFLNKDYILKAISMKEVIEEDEKAFVITSDKNANIPLRTNVDIKKYKGQVLYMPGYL PEEEISGQKIISIYPENINKNLPSAPSTMILLDAQTGFVKAIIDGTILTRLRTGAMSGVA SKYLSRKDSKIFLLIGTGGQAQSQLEAVLTVRQIEEVYVSDTNFKRAQDFSFEMQEKFKD KFNVKIMPVKSPNDIVPKADIITTVTTSKTPSFDGKLIKKGTHINSIGSYTPDAQETPVE VLKKSSKIYFDSYDAVLSETGDVIIPINKGEFSKDKITGEIGQLIKGNKKPRENDDEITW FKAVGTAVLDLVVGEKIYKKAIKNNIGEFLEF >gi|281297200|gb|ADDO01000057.1| GENE 120 131832 - 133142 1575 436 aa, chain - ## HITS:1 COG:FN0053 KEGG:ns NR:ns ## COG: FN0053 COG1114 # Protein_GI_number: 19703405 # Func_class: E Amino acid transport and metabolism # Function: Branched-chain amino acid permeases # Organism: Fusobacterium nucleatum # 6 424 4 420 424 243 40.0 7e-64 MNNGRMTKILVIGFALFAMFFGAGNLIFPPYLGFISGSKWGLSTLGFSIADAGFGLIGII ALANFDGDIIKLGSRVNRKFAVAVSLAIILCIGPFLAMPRTAATSYEIAIIPIFGDSFSK YLFSFIFFLVCILLTIRANRVVDIVGKFLTPALLVSVGILIIKAFIHPVGPIADKALVDG VIRKGLRDGYQTMDALASCMFSLVVIGEVKTLKLNDKNKEFKMTILSGLTATICLALVYG GLAHIGATYSGNMLVPIDIDNTKLLVDITNRVLGTVGVYVIAIIVLLACLTTAIGLVSAT ASYFTNLLNGRFSYRQLVVVAAVVSGFISVLGVSEIIKISAPILEVIYPCITTLIILGMF NKWIKDDLVYQIPVYINLILGFLAALVERGISSPLQKLFDILPLTKLGLYWVVPMIMGVV IALIISKFKEGKKEEA >gi|281297200|gb|ADDO01000057.1| GENE 121 133245 - 133895 860 216 aa, chain - ## HITS:1 COG:lin1022 KEGG:ns NR:ns ## COG: lin1022 COG0569 # Protein_GI_number: 16800091 # Func_class: P Inorganic ion transport and metabolism # Function: K+ transport systems, NAD-binding component # Organism: Listeria innocua # 4 214 5 216 219 166 37.0 2e-41 MRNFVVIGCGRFGSTVAKRLYELGQDVMAVDKDEELINRIAPNVTTAVVCDVTDENAVKE LGLSNFDVAIVSVAQNLEAEILAVLSCKEANIKKIVAKASNNRAGEILSRVGADKIIEPE KEMGHRLADILSGENIIDSIEFSKDYSIVEVEVDKNWIGKKLMDLKFREKYKCSILFIQR EKEMFVNPSFDFILEGDDLITVLGENKYINKIKKTY >gi|281297200|gb|ADDO01000057.1| GENE 122 133899 - 135260 1133 453 aa, chain - ## HITS:1 COG:BS_yubG KEGG:ns NR:ns ## COG: BS_yubG COG0168 # Protein_GI_number: 16080162 # Func_class: P Inorganic ion transport and metabolism # Function: Trk-type K+ transport systems, membrane components # Organism: Bacillus subtilis # 10 453 5 445 445 293 42.0 4e-79 MKNKLFKIFKAVIKRWVKKPELIISLSFLILILIGAILLALPIASKNGKSIGFINALFTS ASASCVTGLVVVNTTSYWSVFGKFVIILLIQMGGLGTMLIISLVSLMLGRKIGLTERLLI KEGAGLDSYSGIVKLSKNIIIFSLVVEFLGASVLYIRLNQIYGSFTGLIYSLFHSISAFC NAGFDIFGNSLVDFKGDLVINLSIAFLIIIGGLGYSVFYDVYKSRRFRKLALHSKVALTI TAFLILFGTISFYLLEYKEPSMHGFTQKEKILSSFFMSVTSRTAGFNSLNIGLMKGSSVV LTILLMFIGASPASTGGGIKTTTFGVLVMSTFSVLRGDEEVSIFKKRIPMEVILRSITIF FFASGIVLFVSMVITLIEGEKFFFLDILYETVSAFATVGITRGITPFLSNFSKVILTFLM FIGRVGPTTVALGLLKRKNKKLTKYAKGKIIVG >gi|281297200|gb|ADDO01000057.1| GENE 123 135443 - 135955 577 170 aa, chain - ## HITS:1 COG:no KEGG:Amet_4324 NR:ns ## KEGG: Amet_4324 # Name: not_defined # Def: hypothetical protein # Organism: A.metalliredigens # Pathway: not_defined # 6 150 18 164 187 107 46.0 2e-22 MQRQVMSTKTLTRSAILVALAIILTRFLSVMLTENLRLGIGWMPIVLTGTLYGPFVGAIC GIVEDLLGIIINSQGTVHFGFTLSAMLTGLIPGLISYYFMKNKSDNLVIAVSCIAVAIIV HCLLNTLWLSQLYGNGFLVLLPTRVVKVAIETFLVIVTGQITNRLLKKIY >gi|281297200|gb|ADDO01000057.1| GENE 124 136137 - 137405 1424 422 aa, chain + ## HITS:1 COG:BS_folC KEGG:ns NR:ns ## COG: BS_folC COG0285 # Protein_GI_number: 16079860 # Func_class: H Coenzyme transport and metabolism # Function: Folylpolyglutamate synthase # Organism: Bacillus subtilis # 25 419 30 430 430 241 36.0 1e-63 MTYIKWLIERKTPMVDFTVENVAFLLEKLNNPQDRIKTIHISGTNGKGSLVFYLENALFF NNYKVGTFTSPYMTDINDSIEINGQKISNEDYENVLAKIYPIILEMDKINKYVTGFEIQV AAAFLYFYEKKVDVAIIEVGMGGRFDATNVMKSPLLSAFTSISLDHANLLGKTLKEIAWN KGGIIKKSRPTFLYPQKEEVYKELKEIADENKSEIYKFDFSEINIINEDINGNEFSFREY KNIKTSLIGRHQAYNASLALSILSYLKNFFVLDDEKIRQGIYKTTNPARLEIISDEPLIL MDGSHNEESINSLISNLDKFNYEKLILGFSILRDKEREKIIKNLAKYADTVVLTDIDSDR KSDINDLYNIFKSYTDKKIYMETDIEKAVNKTLELASKKDLILWCGSLYLMKDIRHFLKN HK >gi|281297200|gb|ADDO01000057.1| GENE 125 137543 - 138178 574 211 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282882827|ref|ZP_06291432.1| ## NR: gi|282882827|ref|ZP_06291432.1| conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] # 1 211 1 211 211 292 100.0 1e-77 MPKSFIFIILVAYAFSLSNILKKQKTGGRVKTSSKETEYSKKLKENKEREIKFSSESAKR NKEIIKSISKNPILTNKKLQKEPRSPEYNSAFQELRDILSHGVDSNREMAHDFVKNLFEK KENNKVKKFDNKEYLRKAQEEKNQIKAYYDQLEKKEEAYRMEIKKASDDVEISGKDSEKT DSMEFDLHFLDSDLANAVILKEILDKPLSLR >gi|281297200|gb|ADDO01000057.1| GENE 126 138178 - 139086 1285 302 aa, chain - ## HITS:1 COG:BH1357 KEGG:ns NR:ns ## COG: BH1357 COG4864 # Protein_GI_number: 15613920 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 1 302 27 328 331 377 69.0 1e-104 MGLWITAFFSGVRIKISDLVGMKLRRVRPSRIVNPSIKATKAGLNLDISGLEAHYLAGGN VNTLVDALIAAQRANIPLQFERAAAIDLAGRNVLEAVQVSVNPKVIETPNISAVAQDGIE VIVKAKVTVRANIDRLVGGAGEETIIARVGEGIVTTVGSSKSYKSVLENPDSISKVVLEK GLDSGTAYEILSIDIADVDVARNIGARLQTDQAEADKRIAEAKASERRAMALAREQEMKA EVEAMRAKVVEAESEVPIAMAQALKSGNLGAIDYYKIKNLNSDTDMRNSISKTSDKTKKE NK >gi|281297200|gb|ADDO01000057.1| GENE 127 139184 - 140020 759 278 aa, chain - ## HITS:1 COG:BH1356 KEGG:ns NR:ns ## COG: BH1356 COG1030 # Protein_GI_number: 15613919 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Membrane-bound serine protease (ClpP class) # Organism: Bacillus halodurans # 31 277 190 442 445 123 30.0 4e-28 MKKFIAIILMLIFAVSFSNVFAQEIFDKDRSYTLSYVSSKNYSDLSSSNRNNEDNSLANT LEKLLLNRNVHRILLTIAMMAIVFEIFSPGFGLGGLISIISIFLFFLGTFSAGSASISSF VMFMVGIILIFIELLVPGFGLPGISGMFFLALGLINSMGDFTFALVSLAIALIISLILGF ILFKLGYNLKILDKFLLKKESSSEQGYLSVDSPCVKVGDILLTIRPLRPVGKARLINNKE DERCKGEFEVISSNSYIDKDEKVVIIKISGSKIFVEKN >gi|281297200|gb|ADDO01000057.1| GENE 128 140354 - 140812 636 152 aa, chain + ## HITS:1 COG:no KEGG:EUBELI_20159 NR:ns ## KEGG: EUBELI_20159 # Name: not_defined # Def: hypothetical protein # Organism: E.eligens # Pathway: not_defined # 3 151 2 150 150 143 48.0 2e-33 MYIRKVSHIGLTVTNLQRSIEFYRDILGLYYKGQMVMEGASSDELFQKKNIYAKVGYLSY SKENSPADIELIEFVGTPITKRSPSLFETSISELCFEVWDIEKFYEMLKEKNVKTMSSPQ EFDSTKYGMGKSKALYFYDPDGNILEAIRPID >gi|281297200|gb|ADDO01000057.1| GENE 129 140852 - 141295 335 147 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42519249|ref|NP_965179.1| 30S ribosomal protein S21 [Lactobacillus johnsonii NCC 533] # 1 147 1 147 147 133 42 5e-30 MSIKDKLMADLKDAMKSHNKLRKDVITLIRSAIKQREVDERIELTDEDILTIISKQLKEK KSSIEDFKKGNREDLVKQTEDEMEILLEYLPKQLSQEDLKEIVKDAIDKENISSMKDIGK LMKAVMPQVKGKADGNAVNKIARELLN >gi|281297200|gb|ADDO01000057.1| GENE 130 141308 - 141487 249 59 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169824471|ref|YP_001692082.1| 30S ribosomal protein S21 [Finegoldia magna ATCC 29328] # 1 59 1 59 59 100 79 4e-20 MSEIRVGENESLDNALKRFKRQCANSGVLKEVRKREHYEKPSVRRKKKSEEARRKKHRF >gi|281297200|gb|ADDO01000057.1| GENE 131 141606 - 143012 889 468 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|145629959|ref|ZP_01785741.1| 50S ribosomal protein L21 [Haemophilus influenzae 22.4-21] # 2 450 1 440 456 347 39 3e-94 MLDLTNIVKNINSILWGPPMMIILLGFGIFSTIYLGFPQLKRLPIGFKSTFGGIFNKKKT KKGSMSSFQALATAVAAQVGTGNIGGVAAAISMGGPGAVFWMWMTAIFGMSTISVEAILA QKYRRRRNGDLVGGPAYYLSQGLKNKGFENLGKFLATTFAVLIVVALGFVGNMVQSNSIS LALAEAFNMPAIIIGFVISIFAAFIFIGGMGRIAKFAETVVPFMAVIYLLGSIVVMVRFS NMIGPTFKAIFEGAFSSKALLGGATGIAVKTAIRYGIARGLFSNEAGMGSTPNSHAVAHV DHPVIQGCVAMIGVFVDTMLVCTATSVVVIATKTYQIDSLQSVMITMEAFKIAFGKVGSS FLAISLTFFAFTTLVGWYYFGESNIKFLFKKKVYLRIYQFLVLLFIILGSVLKIELVWEM ADMFNGLMVIPNIIGLFILLKEVKKIYRDFDIRNNNGEILSYNYLYED >gi|281297200|gb|ADDO01000057.1| GENE 132 143097 - 143723 823 208 aa, chain - ## HITS:1 COG:PAB2379 KEGG:ns NR:ns ## COG: PAB2379 COG1394 # Protein_GI_number: 14521958 # Func_class: C Energy production and conversion # Function: Archaeal/vacuolar-type H+-ATPase subunit D # Organism: Pyrococcus abyssi # 4 200 6 205 214 120 40.0 2e-27 MATKVVPTKANLLAIKAQLSFARKGYELLDRKRTVLIKEIMELNKKAESLQEEISKTFDK TYDSLKSATVSMGSELLSEISKDVAPEEDFEIINRSVMGVDIPEIKFNKKKVKTEYSFHD STMDLDDTSINMQNLLYLIYELAQIESSCIRLADEIKKTVKRANALDKIQIPRFENTVKY IEDILGEKEREDFFRMKKVKKRKKVVQN >gi|281297200|gb|ADDO01000057.1| GENE 133 143713 - 145101 1449 462 aa, chain - ## HITS:1 COG:TP0528 KEGG:ns NR:ns ## COG: TP0528 COG1156 # Protein_GI_number: 15639518 # Func_class: C Energy production and conversion # Function: Archaeal/vacuolar-type H+-ATPase subunit B # Organism: Treponema pallidum # 5 456 6 455 480 532 57.0 1e-151 MKKEYFTLEKIEGSLIEVTNLHQVSYGEVVKIKSKTTDETQVGEVVKIDDNKALVQVYGT NMGVSGNNTGLEFTGVPFEVPLSKEILGRVFNGIAKPIDRGGDIYSGKFYNVSGRPINPV AREYPRNFIQTGISSIDGLMTLIRGQKLPIFSGSGLDHNQLAAQIVRQAKISGDKNENFA IVFAAIGVKHDEADFFREAFKNAGVNERVVMYINYADDPIMERLITPKCALTAAEYLAYE ENTHVLVIMTDITSYAEALREVSSGREEVPSRKGYPGHLYSDLAALYERAGMIKGIDGSV TLIPILTMPSDDITHPIADLTGYITEGQIVLSRDLQGSDIYPPINILPSLSRLMKDGIGE GYTREDHADLSAQLFSSYSRVQDVRALAQIIGQDDLSDGDKKVLEFGTAFEKEFLSQKQD ENRSIGETLDLGWKLLRILPREYLDRISPKYVEKYLGDENGN >gi|281297200|gb|ADDO01000057.1| GENE 134 145098 - 146870 1805 590 aa, chain - ## HITS:1 COG:MK1017 KEGG:ns NR:ns ## COG: MK1017 COG1155 # Protein_GI_number: 20094453 # Func_class: C Energy production and conversion # Function: Archaeal/vacuolar-type H+-ATPase subunit A # Organism: Methanopyrus kandleri AV19 # 6 583 9 588 592 624 54.0 1e-178 MNTAYIKSVDGPVVVGYNMKDFKIREMVVVGEEKLIGEVISIEKDLGTVQVYEETQGLRA GSPIVSTGAPLSVKLGPGLISNIFDGIERPLTNIKDKHGNFMPEGIGLISLDTEKLWQTH FLVKVGDKVSQGQIFAEVPETDIITHKVLIPIGVEGEVVSVKSDGKYNIEEEVLKVRDKE GNEISVKISQDWPVRVPRPCLERLPINKLLVTGQRIFDVFFPLAKGGTTAIPGGFGTGKT MTQHQIAKYCDADIIVYIGCGERGNEMTEVLEDFPKLMDPNTGKPLMARTILIANTSNMP VAAREASIYTGVTIAEYFRDQGYHVALMADSTSRWAEALREISGRLEEMPAEEGYPAYLP SRVAEFYERAGYVESFSGHEGSVTLIGAVSPAGGDFSEPVTENTKRFVNVFIALDKDLAY ARHYPAINWMNSYSQYNDALKNYYDINLDGDLPKLKNKFLDLLHQEAKLNEIVMLVGEDV LPNESRLVLEISRVVKVGFLQQNAFNDTDTFVPLTKQFEMLKTIDLLYEEGKKALSENIP ISIIRNDEIYGEVINMKYNIGNDQMDKFVELNNKVRSFYSNLMVKYEVTE >gi|281297200|gb|ADDO01000057.1| GENE 135 146867 - 147487 745 206 aa, chain - ## HITS:1 COG:no KEGG:FMG_1167 NR:ns ## KEGG: FMG_1167 # Name: not_defined # Def: V-type sodium ATP synthase subunit E # Organism: F.magna # Pathway: not_defined # 1 201 1 195 202 66 28.0 8e-10 MILLENKITIFTHMVYAKKSEECRKKLEDEKNLYNQKLKEKEDELKKTASEIVKRRVDLA NKNGYELVSKAHEENRIAELFEAERQLDQLLEKVRIRLKDYTKTENYGKYVLGTFAKALE DLDDDEIYVYLRDAESDALKEKILEEAKRHNISVEFKRLPEKFIGGLIISDKNGNYEINL SLSEKIEDSRYKIGSMLHLIMKEVED >gi|281297200|gb|ADDO01000057.1| GENE 136 147498 - 147803 417 101 aa, chain - ## HITS:1 COG:no KEGG:FMG_1168 NR:ns ## KEGG: FMG_1168 # Name: not_defined # Def: V-type sodium ATP synthase subunit F # Organism: F.magna # Pathway: Oxidative phosphorylation [PATH:fma00190]; Methane metabolism [PATH:fma00680]; Metabolic pathways [PATH:fma01100] # 1 100 1 101 102 73 44.0 2e-12 MKSILLSDSKDIITGLRLAGVKGVYCKDKEDLKKNLYAATHDNNIGIIILTRGVEDKIQD ELIKVKEQKMPLVVTIPDLKKGLEKDFILKYIKDSIGIKIS >gi|281297200|gb|ADDO01000057.1| GENE 137 147803 - 148225 659 140 aa, chain - ## HITS:1 COG:no KEGG:ELI_2421 NR:ns ## KEGG: ELI_2421 # Name: not_defined # Def: V-type sodium ATP synthase subunit K # Organism: E.limosum # Pathway: Oxidative phosphorylation [PATH:elm00190]; Methane metabolism [PATH:elm00680]; Metabolic pathways [PATH:elm01100] # 4 140 7 144 144 94 50.0 1e-18 MEKLMILSILALVAIFASTGYVILSKQKKSQKFIKAFIRLNLIIFVPVIVFGVITLVPEI TRAATNAPQQGSGLGFLAAGLSTGLASIGAGLAVSQVGAAAIGAISEDSSILGKTMIYLG LAEGIAIYGLIISIMILGRL >gi|281297200|gb|ADDO01000057.1| GENE 138 148237 - 150171 1905 644 aa, chain - ## HITS:1 COG:PH1981 KEGG:ns NR:ns ## COG: PH1981 COG1269 # Protein_GI_number: 14591717 # Func_class: C Energy production and conversion # Function: Archaeal/vacuolar-type H+-ATPase subunit I # Organism: Pyrococcus horikoshii # 101 636 104 645 659 129 23.0 1e-29 MAVEKMRMMNAMAPLDNMDNIILDILKVKSAKFVSSQAQLDENNFVFSLEDERNLERNIE LNYITTFKSNIKNQETVKRAREIMEFLQIDKIDEEFLDKIDLSIDFEKFYQIMREKMVKS AETREKLKAVESIEENYKLFKNVNLDLSEISNMEYFTVRFGILDKDGRLRLKKSYDTIVA MIFHTATIDNNEIYLAIYPNDMQSEMDRVLKSLNWRDINLSVNEKGTAKEILLNLKKTET DLKKELFDIESFKKDLYTNKRDKLMITLASMLVYEKIEEVKKYLTKSKKYFYMSCWVGVS DVDKLANILYAYDDVSVAFIEPEDSVNPPTKLKNLNFFKPFELLINMYGTPNYREIDPTP FLAITYMILFGAMFGDLGQGAVFFVGGILLARKSKNFGELLMRMGLSSCIFGILYGSVFG REDILKGLWFKPFDNINKTLVIAIYFGIGLLFISYILGIVNRLLRKETFDAIFDKEGFMG VIIFFAMINIGMNVMGAQGLINNGVSLALIILALVLMILKRAIKSAVTKEIPEISAGDYY IEGAFGLLEALLSTMSGIISFIRVGAFAINHVGLFLAFQTLAQMIGKFPGNLLILILGNI VIICLEGLIVFIQSLRLEYYEMFSKYYKGDGYEFRPDYVNLKEN >gi|281297200|gb|ADDO01000057.1| GENE 139 150176 - 151177 824 333 aa, chain - ## HITS:1 COG:no KEGG:FMG_1171 NR:ns ## KEGG: FMG_1171 # Name: not_defined # Def: V-type sodium ATP synthase subunit C # Organism: F.magna # Pathway: Oxidative phosphorylation [PATH:fma00190]; Methane metabolism [PATH:fma00680]; Metabolic pathways [PATH:fma01100] # 4 329 7 335 338 115 27.0 3e-24 MSNFVAINAKIDAMYSKLLSHEDFEPLISTNSFKDTVEFLRSKELFKDLNFGMNINEAES ALDTFLYKQLKRLIFYLSGPYRDFLNEYIRVKEYNDLKKALRFLVRDKNKETYEFSLNGK TFDIADMDLKTFVEKCKNSIYYRTLRTYIDEPSDQILFYMEMNLDKLYYTRIIECVKSFS KENKEEFTEIFGRKIDIANIIWIYRGSVNYKLLDEELINFIIFGGKYLNFQTLRELSHLD NIKGFKSILSNTPYDFLFNENGETIANVSVSANRLCYDFACKEFRKTHNNFGHLLSFIVV LEAQLRDIKIFMEAQRLDIGKGKVSDYLVNVRK >gi|281297200|gb|ADDO01000057.1| GENE 140 151170 - 151493 422 107 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282882889|ref|ZP_06291494.1| ## NR: gi|282882889|ref|ZP_06291494.1| viral A-type inclusion protein repeat protein [Peptoniphilus lacrimalis 315-B] viral A-type inclusion protein repeat protein [Peptoniphilus lacrimalis 315-B] # 1 107 1 107 107 112 100.0 9e-24 MKESIDSIIAIDNKTKEMVNKTNKEIFELREDLQKRIIDMENKTLEQAKDLAKSKYNEIT KSFEDKASLILSENRKKLKKVEDDYNKEENHLIDKAIKIILDEDDYE >gi|281297200|gb|ADDO01000057.1| GENE 141 151826 - 152101 63 91 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282882818|ref|ZP_06291423.1| ## NR: gi|282882818|ref|ZP_06291423.1| abortive infection bacteriophage resistance protein [Peptoniphilus lacrimalis 315-B] abortive infection bacteriophage resistance protein [Peptoniphilus lacrimalis 315-B] # 1 91 1 91 91 157 100.0 3e-37 MKNIGKLSNAISRENENSNDKKSIKHYIKKHDHIPLWVLVNYLTVGNISYFYNPWMNLFK IKLLEVLVRDIKKVTSISIDDIFAISGFHNK >gi|281297200|gb|ADDO01000057.1| GENE 142 152322 - 152735 493 137 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282882895|ref|ZP_06291500.1| ## NR: gi|282882895|ref|ZP_06291500.1| putative lipoprotein [Peptoniphilus lacrimalis 315-B] putative lipoprotein [Peptoniphilus lacrimalis 315-B] # 1 137 1 137 137 221 100.0 1e-56 MKKYLGIALVLITILSLTACGSNKKINLPKSEEIKEIEIMKNNSEDSLKIDNQDEISSII SEIKDNTNDTGKESVNDQPTNINDYLIFKFHHKNAEDSSSIAYLYKDKNISYIEQPYSGI WKLREEIFDKISGNLIK >gi|281297200|gb|ADDO01000057.1| GENE 143 153191 - 153361 278 56 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282882798|ref|ZP_06291403.1| ## NR: gi|282882798|ref|ZP_06291403.1| inner membrane protein YbhI [Peptoniphilus lacrimalis 315-B] inner membrane protein YbhI [Peptoniphilus lacrimalis 315-B] # 1 56 1 56 56 87 100.0 2e-16 MGKKNLWLVITILAFIALIASIYMSYKTGKTEYAWIIGSMLLGIGSGDKYKKLRNK >gi|281297200|gb|ADDO01000057.1| GENE 144 153633 - 154898 2159 421 aa, chain - ## HITS:1 COG:FN0488 KEGG:ns NR:ns ## COG: FN0488 COG0334 # Protein_GI_number: 19703823 # Func_class: E Amino acid transport and metabolism # Function: Glutamate dehydrogenase/leucine dehydrogenase # Organism: Fusobacterium nucleatum # 3 421 18 439 439 495 61.0 1e-140 MTDNLNPLLSAQAKVKNACDKLGEDPAVYELLKEPQRVIEIKIPVKMDDGSLKTFKGWRA AHSTAVGPAKGGVRFHQNVNADEVKALSLWMTFKGGALGLPYGGGKGGICVDPSELSERE LEQLSRGYIRGLYRYLGDRIDIPAPDVNTNGQIMSWMMDEYIKVNGDKMDLGCITGKPVE FGGSEGRNEATGFGVSIVVREAAKRYGIEMKGARVAVQGFGNVGTFTVKNIARQGAKVVA LAEWDKSKGNFALYNEDGINYEELFAYKNEHHTVLGFPGAKEISTDEFWTGKYDVLVPAA LENVITYDVAKKLNVKLVCEAANGPTTPEGDKGLAEANIPLVPDILTNSGGVLVSYYEWV QNQYGYYWTEKEVEEKQEADMMKAINGVFGIADEYKVTPREAVYMYGVKSLAKAMKLRGW Y >gi|281297200|gb|ADDO01000057.1| GENE 145 155206 - 156087 822 293 aa, chain + ## HITS:1 COG:CAC0496 KEGG:ns NR:ns ## COG: CAC0496 COG1284 # Protein_GI_number: 15893787 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Clostridium acetobutylicum # 17 291 4 279 279 160 33.0 4e-39 MNFFKSSINEIFNRDFFKKFFILIIGNFLIACAILFFIRPNALISGGLTGLAVLINQITN TNLSILILLLNFPTFLLSIFFLKKDFTFFSAISVLIISFIVSVLEKVFHGIVLTHDPLLA AIFGGLINGVGGGLMFLFGTSTGGLDIIAAIFKKYFNIQLGNVLMAINLCIISLSGIYHG ADKAMYTLILLFISYQVIDMIQMGVGRQKQIFIISDYHDEIAKEVHKKVHRGATFLKGQT AYLGKDVYLVYIICSSHQLVTVRNIVHEIDPKAFMAVSDTSEIMGKGFKSINF >gi|281297200|gb|ADDO01000057.1| GENE 146 156219 - 157538 1502 439 aa, chain - ## HITS:1 COG:CAC0460 KEGG:ns NR:ns ## COG: CAC0460 COG1253 # Protein_GI_number: 15893751 # Func_class: R General function prediction only # Function: Hemolysins and related proteins containing CBS domains # Organism: Clostridium acetobutylicum # 10 434 13 437 443 343 45.0 3e-94 MDEGAALWAKLILIVFLTMVNAFFASAEMAMVSANKNKIKELAEKGNKRAKTLLETLKNS TRFLSTIQVAITLAGFFSSGSAATSISRVFGDYLREINIPYGTTISFIVVTLILSYISLV FGELVPKRIALYNAENVALRGVYAVKITSIIFAPFVKLLSISTVLVLKLLGKYSEDVEEQ ISEEELKSYIKVSQEQGVINSTGEDMIINIMDFDDKMAYEIMTPRTAIFMVDYDEFSVDS ISEILATGYSRMPVYRENADNIIGIINIKDLFIEYEKNNYKNFNLDKCLKTPYFVPETKK IDRLLKELQTSKNYVAILIDEYGGFSGMVTVEDIVEEIVGEIEDEYDRNTPSMEKIGPNE YMVDGYMTIEDINEELDTKLFSENHETISGLIIEKLGYIPEENEKKKLQVKTNGVMLTVL AIKDKRIVKAALKILDNKK >gi|281297200|gb|ADDO01000057.1| GENE 147 157666 - 158037 431 123 aa, chain + ## HITS:1 COG:no KEGG:EUBREC_0201 NR:ns ## KEGG: EUBREC_0201 # Name: not_defined # Def: hypothetical protein # Organism: E.rectale # Pathway: not_defined # 1 123 1 131 131 113 44.0 2e-24 MFFICGITNGKDDLSYDGDLFVHSCGAYGRYQVFMTYFKLSLFFIPILKFNKKYFVRTTC CDKIYGLDKSLGQKIENSIDVIINEDDLIEIEYEQNSNFKICKNCKYKTHKEFLYCPKCG QKL >gi|281297200|gb|ADDO01000057.1| GENE 148 158048 - 158644 553 198 aa, chain + ## HITS:1 COG:no KEGG:HMPREF9243_0684 NR:ns ## KEGG: HMPREF9243_0684 # Name: not_defined # Def: hypothetical protein # Organism: A.urinae # Pathway: not_defined # 1 195 1 196 197 165 44.0 9e-40 MKFIKRKLTLLILLIAVGMGAFFFGMNEAKSDLTPEISSSLISSKLIGVKELTTVKYHYK NMGQFSNQSTFYGWKVPFTDKKFIVAYEGLICAGVDLENLDIQIHDKTINIKIPKSKILS HTIDEKSIKVFDEKNSIFNPIKIEDYKNFSTDQKTVVEKDAIKKGLLKEADDKTQKAIEE ILNVDDLLRAYQIKVSMK >gi|281297200|gb|ADDO01000057.1| GENE 149 158684 - 159562 555 292 aa, chain - ## HITS:1 COG:FN1744 KEGG:ns NR:ns ## COG: FN1744 COG0697 # Protein_GI_number: 19705065 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Fusobacterium nucleatum # 4 290 3 291 293 77 28.0 3e-14 MKNKLGYLYAISSAIIYGIMPIFTKSLINFGINPITSSFYRMFLWLLPIFIYCKFIIKID LSLKKKDLIEVFLAGALFGGTSITLFSSYKYLGAGCAESIHFIYPCIIFIIMSFVFKNKP SKAEILALILSCIGVFMLADFSDVHELSGVIYAVLSAFFFAFYSVSIEKSNMPNMNVMKS LFYVNFFGAIVIGLYALVLKIPIKYDFSHGQWGFLLVYSFFLTIGATLLYQLAIFKIGAT KTGILSTAEPIVSLIAGFIIFSEDMGINKIIAIIFIVLAAIYIVRRQDKVNE >gi|281297200|gb|ADDO01000057.1| GENE 150 159654 - 160184 427 176 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|28210085|ref|NP_781029.1| SSU ribosomal protein S30P [Clostridium tetani E88] # 1 173 1 173 176 169 47 1e-40 MLLELVGKNIDLKDGLKNQAQKKFSKLDKYFAEEVQARAVFSKQKNGQKVEVTIFLPGTI LRAEETSQDMFVSIDKTVDKLERQVRKYKTRLKKRYQNNETIRFDNFDKEPVQKEEDKDI KKRKTFTLRPMHEDEAILQMELLNHNFFIFKNAENDKIEVSYKRSDGDYGIIEVDG >gi|281297200|gb|ADDO01000057.1| GENE 151 160350 - 162077 1443 575 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282882814|ref|ZP_06291419.1| ## NR: gi|282882814|ref|ZP_06291419.1| conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] # 1 575 1 575 575 858 100.0 0 MINKLDIFSLTTSLILEKAKNNINFNDATYPDILNEGKEESDIFPFMNKSAFAGWILFDT KSNLTFSKDYITNNIGDDYINGFSEFNLDEYFDFIFSSYSSIFTVEEIEGSYIYLRDLIL NVKIKAYDSQHFINKEFNNYFLRVSKYQNEYVIVQINTSFNDDFKDFFIKDLRDYLNYEK INIKKFADMKSYLKENLINIFYVYGSSLSDYSTYVQERFDEDQENRFLNKAFSKEDKELF NKFSLSLSNSTKNFQLNRDEIMYYVSLIYDEYLKNNDLNYSSYKDLDFKKIYYELSLRGQ FCNLSELNNSLMLFKNYYLYIKKYNKNFDDLPIKSIDKAIDNTFIYQNLLQNSIEGYFVD ETLLDIIKNSYFEESKFINEFENFIDYIQYYYLYENKNGELSPAVVKSISKELGLKATKN VKNLREYHFPELMVFLKFAKIKNIISVEKENLFKHGLYELSSNAYKYLNLDYNEKLALWF STLINKEFYRDMYSQNKIDKIKKFMIDLFVKIDENKLEKNYSYQGEYEPIIGILIDLGIF KDFDKLEFTNLGKKIFKYYNKLIPIKNIINIDFKK >gi|281297200|gb|ADDO01000057.1| GENE 152 162125 - 162349 318 74 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169824836|ref|YP_001692447.1| 30S ribosomal protein S18 [Finegoldia magna ATCC 29328] # 1 74 1 74 74 127 79 4e-28 MQRRFTRRKKVDPFEKDKTKKIDYKDVDMLRNYISERGKILPRRITGLNAKHQREMTVAI KRARQIALIPYSAE >gi|281297200|gb|ADDO01000057.1| GENE 153 162362 - 162910 763 182 aa, chain - ## HITS:1 COG:lin2402 KEGG:ns NR:ns ## COG: lin2402 COG0629 # Protein_GI_number: 16801465 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-binding protein # Organism: Listeria innocua # 1 182 2 160 160 104 41.0 1e-22 MNNVCLLGRLTRDPELRYTPQGGVAVVRFTLAVNRRLGKEKRQEIESNHGQTADFISCTA WRQTAELIANYCHQGDQIAVEGRIQTGSYEKDGRRIYTTDVVVNTMDFASRAGGGNYSSN NSYNQDYGNNNYNQVPNQSYNNNNNANNPPVNSAYNNDDFSNGDSNSDDEGFFPMDNDDI PF >gi|281297200|gb|ADDO01000057.1| GENE 154 162920 - 163204 258 94 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169824838|ref|YP_001692449.1| 30S ribosomal protein S6 [Finegoldia magna ATCC 29328] # 1 94 1 94 95 103 46 4e-21 MNKYEAVIMFYPDVEEEKREASFTRIKGIMEKHGKINNIDEWGMKKLAYEIDYYKEAYYT FVEFDCDPEEIQEINRIARISDPIMRIMVIKVEK >gi|281297200|gb|ADDO01000057.1| GENE 155 163331 - 165412 1879 693 aa, chain - ## HITS:1 COG:CAC1031 KEGG:ns NR:ns ## COG: CAC1031 COG0370 # Protein_GI_number: 15894318 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+ transport system protein B # Organism: Clostridium acetobutylicum # 4 689 7 680 683 338 32.0 2e-92 MEKVVALAGNPNVGKSTVFNALTGLKQHTGNWPGKTVECAKGNVEDKGNKFQLVDLPGSY SLLAHSEEEEIARDFICFEKPDAVIVVCDGTTLERNMNLVLQIMETTKNVILCVNLLDEA KRKNIEINLNKLSDILKIPVIGTAARSGKGLEKIFPSLYELFSNKKDDIYIVRYAEELER EISILQEDLEKFLPDSLNARWAAVRVLEDDKSFFESLSKYENIDLSANKNLDEKIKASRL RLQDKTYNLEKIKDSIVEAFVNNAEEICKDTVVYKNKNYNQRDRKLDKLFTSKTTGFLIM FLLLLGVFWITIAGANVPSDLINKLLFSWEDNILSFLKNIGLPKSIYGPLVFGVYRVVAW VISVMLPPMAIFFPLFTLLEDFGYLPRVAFNLDKYFQKCNACGKQALTMCMGFGCNAAGV TGCKIIDSPRERLIAILTNNFVPCNGRFPTIIATITMFLVMGFGGGFLSSLFSAFILALV IILGVFITILASKILSETLLKGIPSSFTLELPPYRVPQVGTVIVRSIFDRTIFVLGRAVV VAAPAGIIIWLLANINFGDMSILNHLVNFLEPLARLMGLDGVILAAFLLGLPANETVVPI IIMTYLSKGSLLEIDDINVMRNLLVNNGWTIITAINVILFSLMHWPCGTTLLTIHKETGS IKWTVISFLLPTVFGIVSCICFTSLSKLFLAIF >gi|281297200|gb|ADDO01000057.1| GENE 156 165415 - 165639 380 74 aa, chain - ## HITS:1 COG:no KEGG:Closa_3332 NR:ns ## KEGG: Closa_3332 # Name: not_defined # Def: FeoA family protein # Organism: C.saccharolyticum # Pathway: not_defined # 3 72 7 76 104 72 45.0 5e-12 MNLAQIEPGQSAIVKGFTENSKIRRRLQDLGLISGTKVRCISRPPLKDPTCYMIRRAVIA IRYSDAKEIIVKEL >gi|281297200|gb|ADDO01000057.1| GENE 157 166005 - 167195 1328 396 aa, chain - ## HITS:1 COG:CAC2970 KEGG:ns NR:ns ## COG: CAC2970 COG1168 # Protein_GI_number: 15896223 # Func_class: E Amino acid transport and metabolism # Function: Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities # Organism: Clostridium acetobutylicum # 31 391 22 382 384 280 37.0 5e-75 MKYDFLTNPDRRKQGSRKYMVMYNKNPHLSKDIIPLSVADMEFVTPPEIREGLKDFLDEV VLGYSAPNDEYFKALKAFMHRKHNFKIENEWVVNTNGVVLAFFNCVREFLKEDQGLIIMP PVYPPFFNSAKYQGRKLVECPLLCEDGYYTINYELFEKLARDKNNKALLFCSPHNPVGRV WKREELEKLGKIIVKNDLYLFADEIHNDIVMPGYEHTVFQSISDELSERTITFTAPSKTF NLAGLGVSSIIIKNKDMREKFVDGLEKIGAHANSALAYKVAEIAYNECDLWLEEMICVID KNQKLVNKFFKENYPKIKARLIEGTYLMWIDFRDLNMTYKDLQSFMENKAELFFNEGYLF GEEGQGFERINLALPEKSLKEALNRLDKALKEINYK >gi|281297200|gb|ADDO01000057.1| GENE 158 167205 - 167468 387 87 aa, chain - ## HITS:1 COG:CAC3725 KEGG:ns NR:ns ## COG: CAC3725 COG4481 # Protein_GI_number: 15896956 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 4 62 5 63 65 68 52.0 3e-12 MLYYKLDDIVTLKKGHPCGENKWQIKRTGADIKLECMGCGRLIWMSRMEFEKRVRKILEG KKFVSIVHHKKDDDKLDEKDDENLDEN >gi|281297200|gb|ADDO01000057.1| GENE 159 167477 - 168550 1089 357 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282882894|ref|ZP_06291499.1| ## NR: gi|282882894|ref|ZP_06291499.1| hypothetical protein HMPREF0628_0581 [Peptoniphilus lacrimalis 315-B] hypothetical protein HMPREF9131_1124 [Peptoniphilus sp. oral taxon 836 str. F0141] hypothetical protein HMPREF0628_0581 [Peptoniphilus lacrimalis 315-B] hypothetical protein HMPREF9131_1124 [Peptoniphilus sp. oral taxon 836 str. F0141] # 1 357 1 357 357 630 100.0 1e-179 MKIKKNYLIMLGILAVLFLYIIINSSNFTKTRTIVRLRGLNTGTSIEDFHLTSKSILLWG DNTLFICDKDGNISKKIQRDDDKLTCIFVNNYTFLYDKDLKKVYQYSEFGELLNTIIVPG QILHISYENANIVFHIFDKDKEVLYILSNDNSLSEFYSTSNQILVHDIVDRNNFAVGELQ ISGNGYKSILNMTHGGKNIMKTINSEVLMFVKNSDKSTLFLSNKNLYRYLNDGEFYSSEV PNISDVIVDGKITYLLHSGILSKFNYKLEEVDKKIIAANVDKIEMVSNSIYVYGPSDIGG EIGRKGEFYTRLGYSIDKIEIEGLTIGMLRDNELNLYKISTKRVSNDESNDLNLNYE >gi|281297200|gb|ADDO01000057.1| GENE 160 168678 - 168800 90 40 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MEHMQRAILLSRLFYILFNICPQIIQIYFLYKIYRLVKKD >gi|281297200|gb|ADDO01000057.1| GENE 161 168803 - 168931 75 42 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNNFAVMSIISNYCLQAFFIILKTFLIYKIYKEVKKNTRKDK >gi|281297200|gb|ADDO01000057.1| GENE 162 169316 - 171280 2084 654 aa, chain - ## HITS:1 COG:CAC1348 KEGG:ns NR:ns ## COG: CAC1348 COG0021 # Protein_GI_number: 15894627 # Func_class: G Carbohydrate transport and metabolism # Function: Transketolase # Organism: Clostridium acetobutylicum # 9 654 4 658 663 700 55.0 0 MIKGEEMKDSLNVNTIRMLSIDQVQKANSGHPGLPLGAAPMAYELFKDHLKINPKDPNWH NRDRFILSAGHGSALLYSLLYLFGYGLSLEDLKNFRQILSKTPGHPEYGHTVGVDATTGP LGQGISMAVGMALAEEKLGALYNKDIKLIDHYTYALVGDGCLMEGISNEASSLAGTLNLK KLIVLYDSNNITIEGSTDLAFAEDVLKRYDALGWDTFEVMDGNNLEEISKAIEDAKKSPN PAMIKVNTKIGYGSPMAGSEKTHGSPLGIENIKKTREFFNMKDEDFYVDEEVKDNFSQII KNLQEKYQEDKKNEEKYKEKYPKLYKEYIESLDKSKNIDYVDKDFYDSFDKDMATRQTSG KALNHIAKKCKYLFGGSADLAGSNKSSLDGEEYFSKDNRLGRNITFGVRENAMGAITNGM LLHGGLRPYNATFLVFSDYMKPTIRLASLMNIPNIYIFSHDSIGVGEDGPTHQPIEHLAM LRSIPNLIVFRPADGRETCVAWNLAMQSKNTPIALILTRQNLPQLENSSLDAKKGAYIIK KEEEKLEKIIIATGSEVHLALEATKDMKNVRVVSMPSMELFEAQTASYREEILPKEIKKR ISVEASSSFGWQKFTGLEGKNISIDTFGISAPAKEVYKYFGMTVENIKKAVEEL >gi|281297200|gb|ADDO01000057.1| GENE 163 171277 - 172032 859 251 aa, chain - ## HITS:1 COG:lin2665 KEGG:ns NR:ns ## COG: lin2665 COG1922 # Protein_GI_number: 16801726 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Teichoic acid biosynthesis proteins # Organism: Listeria innocua # 2 251 4 241 244 177 40.0 2e-44 MEKVSIFGINICNISFEENKKILEKFLESDKLNRIYTPNTEIVMAAREDNELKNIINSGE LVICDGIGLIYGAKIRKKPLKERVTGFDTSMELLKLADEKGLNLYFLGGKEGVSKKACEN VQKKYKNLKVCGYHNGYFPGSHMGVDNSEEEKNIIDEINSKNVNIIFVGLGFPKQEIWID KNFHKIKANIIIGNGGVLDILAGQAKRAPKIFIKLNLEWFYRLITNPSRFKRQLAIPKFL VSILLDKKSVQ >gi|281297200|gb|ADDO01000057.1| GENE 164 172147 - 172488 363 113 aa, chain - ## HITS:1 COG:CAC0494 KEGG:ns NR:ns ## COG: CAC0494 COG2337 # Protein_GI_number: 15893785 # Func_class: T Signal transduction mechanisms # Function: Growth inhibitor # Organism: Clostridium acetobutylicum # 1 113 4 116 122 148 64.0 2e-36 MIKRGDIFYADLSPVIGSEQGGVRPVVVVQNDVGNKYSPTIIVAAITSQLNKAKLPTHVN VKAKTVPLPKNSVILLEQIRTIDKKRLRERIGRFGDDVMTVIDDAIKVSLGIK >gi|281297200|gb|ADDO01000057.1| GENE 165 172545 - 173705 347 386 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|225086089|ref|YP_002657117.1| ribosomal protein S15 [gamma proteobacterium NOR51-B] # 120 373 252 505 517 138 34 2e-31 MYGIDICKISRIKDLFDKYPKFLDEYFTENEINYIRKKKNPYERMAGIFSAKEAIIKANE IDKTFPPKEIEIFHENKKPYGKFRGQKYYLSISHERDYAIAFAKLIENYIEIEKEFINIM PKRDSNSHKGTFGKIGIVGGSFGMTGSVYLSSNACLKSGAGLVYNVVDKEIFEIMSIKYI EPIAKTFDNNDDLIKFLNSLDVVAIGPGMGTKKEKIEILKRVLKIQKPLLIDADGLNNLV LIDEPFKNRKDFQTVLTPHPLEFSRLTGLDPNFINNNREKLAKEYAKKNKVVLVLKGSAS VVTDGDRIYINKSGNPGMASAGSGDVLTGIISALLKIFPSFEAAKVGVYIHGLAGDFAKN SLGEVSMRARDIINFLPMAFKSIDKN >gi|281297200|gb|ADDO01000057.1| GENE 166 173908 - 175137 851 409 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 [Phaeobacter gallaeciensis BS107] # 8 408 12 416 418 332 42 7e-90 MTKNVFDVLKERGFIDSVTDEENLKDVLEKEKIKFYIGFDATADSLTLGHFLQIRVMQHM QKQGHIPVALLGGGTTSIGDPSGKNDMRKLMDRQTIDHNAKCFKEQISRFVDFSDGKGMI LNNGDWLLNLNFLEFMRTIGVHFSVNRMLTFDCYKNRMEKGLTFFEFSYMLMQSYDFLHL YRNYGVKLELGGSDQWSNIIGGYELVRKLEEEKVFGMTFKLLITANGVKMGKTEKGAIWL SKEKTSPYEMFQYLRNTDDRDVIKFLKLLTLLDMDEIKEYEKLEGQELNKAKEVLAYEVV KDVHGEDEAKKALEASKAMFGGQKTAENIPSTLMNKESLQEGIGILNILTEIGFSKTNSE ARRLINQGGISINDEKITDPALIITLDKFKDDEIILRKGKKLYHKINLK >gi|281297200|gb|ADDO01000057.1| GENE 167 175147 - 176544 1698 465 aa, chain + ## HITS:1 COG:FN1277 KEGG:ns NR:ns ## COG: FN1277 COG2195 # Protein_GI_number: 19704612 # Func_class: E Amino acid transport and metabolism # Function: Di- and tripeptidases # Organism: Fusobacterium nucleatum # 6 464 13 485 486 307 38.0 4e-83 MDKHLVLEYFEKFAKIPRGSGNEKEISDYLVKLAKEKGYKAEQDKVLNVKIDVPSKENCQ NKKRVILQAHMDMVCEKSSDSNHDFLKDPIKLIYDGDILRADGTTLGADDGIGLATAFAL AETTEHGPMTILVTVSEETDMHGAKNVSAEFLQGSYLINIDSEDEGILTMAAAGGEQYKA IFTPSYEDYDKDVLSLEFAGLEGGHSGVEIDKNRGNMIKIIAEFIDKVNGKIAEIDCGTK DNAIPRQGKLLISCDTDIAKKVINELVDKYQDLDGDFSITVSTEKYKGKIQTEKSSKEFA KFLLGLPTGLRSYTDDTKKFLESSSNLAIVRRYEKDTSKYLVKDSMRFIKSSLIEEFEQI FKDASKGFNVDYEFINYYPEWEYKEHSPLREIVKKTYKESYGKDMELAIIHGGLECGVFY KKNPNLDIVSLGPDVRGAHTPKETTYLGSIQRVYNHLVKVINELD >gi|281297200|gb|ADDO01000057.1| GENE 168 176605 - 177039 224 144 aa, chain - ## HITS:1 COG:no KEGG:Apre_1651 NR:ns ## KEGG: Apre_1651 # Name: not_defined # Def: hypothetical protein # Organism: A.prevotii # Pathway: not_defined # 1 143 1 142 143 66 32.0 3e-10 MKNLGKFINLFLVGVGIGTLVEVFISIFIGQITVGVPSYFSKFDSLILARILEILFYGGF SIVGNFSARFYRDDSNSILKASLMQFIILFIYFSFAGYFLCWFRSLYVFIGAFAIFLFIF FSIWTLIFLIEKKKIEKINKKFSN >gi|281297200|gb|ADDO01000057.1| GENE 169 177049 - 177486 523 145 aa, chain - ## HITS:1 COG:SP0161 KEGG:ns NR:ns ## COG: SP0161 COG3279 # Protein_GI_number: 15900099 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Response regulator of the LytR/AlgR family # Organism: Streptococcus pneumoniae TIGR4 # 1 143 1 144 146 72 32.0 2e-13 MKVEIVLDEKYQETYVKIFTDKYNKEIENLEKSLVNINNNVILGFKDDDAFVLDLKNIYR FFTEDKDVFIECRDNTYKSRLRMYEIEHRLNNSFVRVSRSEIINISYIKKLDLSFKGTIA VELKNGTVSYVSRRNLKNFKNVLGF Prediction of potential genes in microbial genomes Time: Mon Jul 18 12:49:26 2011 Seq name: gi|281297162|gb|ADDO01000058.1| Peptoniphilus lacrimalis 315-B contig00013, whole genome shotgun sequence Length of sequence - 37394 bp Number of predicted genes - 37, with homology - 36 Number of transcription units - 14, operones - 6 average op.length - 4.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 76 - 975 925 ## COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family - Prom 1001 - 1060 11.3 - Term 1043 - 1079 5.0 2 2 Op 1 . - CDS 1095 - 2078 937 ## COG0502 Biotin synthase and related enzymes 3 2 Op 2 . - CDS 2146 - 2784 680 ## COG0220 Predicted S-adenosylmethionine-dependent methyltransferase - Prom 2830 - 2889 11.9 - TRNA 3040 - 3116 66.9 # His GTG 0 0 - Term 2970 - 3029 6.2 4 3 Op 1 8/0.000 - CDS 3167 - 3751 307 ## PROTEIN SUPPORTED gi|162456259|ref|YP_001618626.1| putative ribosomal protein 5 3 Op 2 . - CDS 3748 - 4464 793 ## COG0689 RNase PH 6 3 Op 3 . - CDS 4475 - 5863 1414 ## COG0860 N-acetylmuramoyl-L-alanine amidase 7 3 Op 4 . - CDS 5877 - 6854 1150 ## COG0309 Hydrogenase maturation factor 8 3 Op 5 . - CDS 6873 - 8126 857 ## gi|282882968|ref|ZP_06291572.1| hypothetical protein HMPREF0628_0181 9 3 Op 6 . - CDS 8133 - 8693 255 ## CbC4_0790 prepilin peptidase, type IV - Prom 8770 - 8829 8.3 - Term 8740 - 8796 -1.0 10 4 Tu 1 . - CDS 8835 - 9221 524 ## Mahau_1123 hypothetical protein - Prom 9242 - 9301 7.0 - Term 9296 - 9349 -0.3 11 5 Tu 1 . - CDS 9350 - 13030 4333 ## COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain - Prom 13066 - 13125 5.6 - Term 13107 - 13143 3.4 12 6 Op 1 . - CDS 13145 - 13267 177 ## gi|282882986|ref|ZP_06291590.1| formyltetrahydrofolate deformylase 13 6 Op 2 . - CDS 13340 - 14815 1742 ## COG4690 Dipeptidase - Prom 14992 - 15051 12.4 14 7 Tu 1 . - CDS 15135 - 19412 4318 ## COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) - Prom 19468 - 19527 14.7 - Term 19625 - 19657 3.0 15 8 Tu 1 . - CDS 19668 - 19838 321 ## gi|282882984|ref|ZP_06291588.1| ferredoxin - Prom 19972 - 20031 8.5 - Term 19932 - 19972 -0.5 16 9 Tu 1 . - CDS 20113 - 20640 671 ## COG3859 Predicted membrane protein - Prom 20765 - 20824 6.5 - Term 20686 - 20714 -0.9 17 10 Tu 1 . - CDS 20846 - 22195 1406 ## COG0641 Arylsulfatase regulator (Fe-S oxidoreductase) 18 11 Op 1 . - CDS 22257 - 22412 233 ## 19 11 Op 2 15/0.000 - CDS 22422 - 22718 345 ## COG1862 Preprotein translocase subunit YajC 20 11 Op 3 17/0.000 - CDS 22774 - 23886 1313 ## COG0343 Queuine/archaeosine tRNA-ribosyltransferase 21 11 Op 4 . - CDS 23895 - 24914 980 ## COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) 22 11 Op 5 . - CDS 24901 - 26034 945 ## COG2385 Sporulation protein and related proteins 23 11 Op 6 29/0.000 - CDS 26031 - 27035 1294 ## COG2255 Holliday junction resolvasome, helicase subunit 24 11 Op 7 14/0.000 - CDS 27036 - 27632 739 ## COG0632 Holliday junction resolvasome, DNA-binding subunit 25 11 Op 8 . - CDS 27632 - 28126 529 ## COG0817 Holliday junction resolvasome, endonuclease subunit 26 11 Op 9 . - CDS 28164 - 28919 581 ## FMG_0688 hypothetical protein - Prom 28939 - 28998 8.5 27 12 Op 1 . - CDS 29010 - 30005 1302 ## COG2502 Asparagine synthetase A - Prom 30028 - 30087 6.4 - Term 30020 - 30053 0.4 28 12 Op 2 . - CDS 30096 - 30746 412 ## FMG_0687 hypothetical protein - Prom 30781 - 30840 11.6 29 13 Op 1 . - CDS 30852 - 32489 1707 ## COG3858 Predicted glycosyl hydrolase - Term 32507 - 32540 -0.8 30 13 Op 2 33/0.000 - CDS 32544 - 32891 403 ## PROTEIN SUPPORTED gi|229231852|ref|ZP_04356280.1| LSU ribosomal protein L19P 31 13 Op 3 30/0.000 - CDS 32878 - 33618 611 ## COG0336 tRNA-(guanine-N1)-methyltransferase 32 13 Op 4 12/0.000 - CDS 33615 - 34115 489 ## COG0806 RimM protein, required for 16S rRNA processing 33 13 Op 5 19/0.000 - CDS 34099 - 34338 401 ## COG1837 Predicted RNA-binding protein (contains KH domain) 34 13 Op 6 23/0.000 - CDS 34351 - 34647 308 ## PROTEIN SUPPORTED gi|169824223|ref|YP_001691834.1| 30S ribosomal protein S16 35 13 Op 7 8/0.000 - CDS 34696 - 36033 1753 ## COG0541 Signal recognition particle GTPase 36 13 Op 8 7/0.000 - CDS 36044 - 36397 410 ## COG2739 Uncharacterized protein conserved in bacteria - Prom 36438 - 36497 10.2 37 14 Tu 1 . - CDS 36500 - 37393 777 ## PROTEIN SUPPORTED gi|163762490|ref|ZP_02169555.1| ribosomal protein L28 Predicted protein(s) >gi|281297162|gb|ADDO01000058.1| GENE 1 76 - 975 925 299 aa, chain - ## HITS:1 COG:BH3948 KEGG:ns NR:ns ## COG: BH3948 COG0010 # Protein_GI_number: 15616510 # Func_class: E Amino acid transport and metabolism # Function: Arginase/agmatinase/formimionoglutamate hydrolase, arginase family # Organism: Bacillus halodurans # 1 299 1 301 301 253 43.0 3e-67 MNKKISIIGLPLDMGASIRGARLGPSTLRLNGLIRELKSLDLEIKDLGDIEVSNSYEDQV GPKNLKNYQIVKEACTKLYNKVDEIIKTKNLPLVLGGDHSLAIGSVKAALNNYPDLGVIW IDTHGDINNEKISPSGNIHGMSLSAIMGLACEELSNIGQNKNFLKSQNLVYIGLRDLDKE ERQVLKDYNIKAFSLQEIDEYSIGKVTKEALKYLNKKTNHIHVSLDIDVVDPIYAPGTGT RKNGGLTPREIFLLTEILSKSDLITSVDLVEVNPLLDIKSQTSVLAIDIAKSLFGEKLL >gi|281297162|gb|ADDO01000058.1| GENE 2 1095 - 2078 937 327 aa, chain - ## HITS:1 COG:FN1000 KEGG:ns NR:ns ## COG: FN1000 COG0502 # Protein_GI_number: 19704335 # Func_class: H Coenzyme transport and metabolism # Function: Biotin synthase and related enzymes # Organism: Fusobacterium nucleatum # 12 323 39 360 360 286 47.0 4e-77 MQVLEKITVEDLKNKVLDGYEISREDARFLYNADYKELTQASKEIREKFCGDSFDMCTII NAKSGRCPENCKFCAQSAFYNTDVKTYSLLSKDIIVNDAIDKYNQGVPRYSLVSSGKNLS NEDIDRVCEIVEEIHRQVPVEVCISGGLINEEGFEKLKKAGVTRIHNNLETSRNFFPSIC TTHLYDQKINAIKAAKKANMEICSGGIIGLGESREDRLDMIYQLKELEVNSIPVNVLNPI PHTPLENNEILSEEEINRTIAVFRFIIPDATLRLAGGRANMAGLGKSAFEAGANAAITGD MLTTHGVTINDDKKMIESLNYKVRLIS >gi|281297162|gb|ADDO01000058.1| GENE 3 2146 - 2784 680 212 aa, chain - ## HITS:1 COG:CAC2627 KEGG:ns NR:ns ## COG: CAC2627 COG0220 # Protein_GI_number: 15895885 # Func_class: R General function prediction only # Function: Predicted S-adenosylmethionine-dependent methyltransferase # Organism: Clostridium acetobutylicum # 1 196 1 196 211 171 46.0 1e-42 MRLRKKHFAIPEMKENPYVIFDGKKNKGKWKDVFGNDNDIYLEIGAGKGTFTATSALENP NINYIMIEMETNAFIYATRKILDYNLKNVIALPMNAKDILEYFGEDEVSRIYINFCNPWP KLKHQKRRLTYPDFLEKYRIILKEGSQIYLKTDHKEFFVDSLKYFQEQRFVGLISDFNMK EEDYPLNIETEYEKKWRSENKPICLGVFEKYS >gi|281297162|gb|ADDO01000058.1| GENE 4 3167 - 3751 307 194 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|162456259|ref|YP_001618626.1| putative ribosomal protein [Sorangium cellulosum 'So ce 56'] # 1 194 6 204 207 122 35 2e-27 MKLIVSTDNKNKLKEIKEVLKELDMEILSKKEIGASNLEVEENKDSLEGNSELKAKALSS MTDAYILADDTGLFVNALHGEPGVKSARYAGDHDEKGNRKKLLNNLKDKDDRSAYFKTVL CLIDPKKNIKFLEGVCKGHISEEEKGVNGFGYDPIFIPEGYDISFGQMTLQEKDKISHRA KALENLKKYFTELI >gi|281297162|gb|ADDO01000058.1| GENE 5 3748 - 4464 793 238 aa, chain - ## HITS:1 COG:NMB1499 KEGG:ns NR:ns ## COG: NMB1499 COG0689 # Protein_GI_number: 15677352 # Func_class: J Translation, ribosomal structure and biogenesis # Function: RNase PH # Organism: Neisseria meningitidis MC58 # 1 232 5 236 242 253 55.0 3e-67 MRTDRQNSEIREIKISPDFVPNADGSVLIECGNTKVVCTAIIEEKVPPFLRGKEMGWVSA EYSMLPGSTVIRKVRDISRGKQDGRGTEIQRLIGRSLREAVDLKALGERTIWLDCDVINA DGGTRTTSINGSYLALEMAVNKALKNKRLEVNPIKCKVGSISVGKVKGIKLVDLDYKEDS NADVDLNLVMNDKFEIIEIQGTSERDTFTAEELAEFLKFAQIGIKDIFKYMEIVEEYI >gi|281297162|gb|ADDO01000058.1| GENE 6 4475 - 5863 1414 462 aa, chain - ## HITS:1 COG:CT268 KEGG:ns NR:ns ## COG: CT268 COG0860 # Protein_GI_number: 15604989 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: N-acetylmuramoyl-L-alanine amidase # Organism: Chlamydia trachomatis # 276 456 61 239 259 110 35.0 7e-24 MKKILLILTVFALLIISTSAKNSFPVKIKKKNYNVNSCNVKIDGKDLQTTYNAYVKDGRT FVPIREITEALGADVLWDNEKKTALISMNDKNIKLQIGSSIVFVNDEKTKIDKNSVPALV DYIDAKGTKTMVPLRFLSETFGYDVSWDQDKFLAQVNSYKADSIMDKDEKKLVDKKDNTT NKNDKKTKIKKKDNKKNKTKKTKTKNPEKNSLNNINSIVKNQYQSKEEIKETKYLTEKIF EDESESALKAVGLDSEDMEKKQVVNENLYVNGKVRIILDPGHGGKDSGANSKDNKVHEKD LTLLVATKLYNRLLEDGMDVSITRTRDEFIKLQDRASLANETNADIFLSIHINSSENTNA SGIEVLYASEKNIKIKSTVQKYFAQELQKSLLKETGAVNRGIKNRPAIIVLNQTKTVAAL AELGFISNDEELSNLTDDDYIDKLVNGLYNGIYSYIDKYVKY >gi|281297162|gb|ADDO01000058.1| GENE 7 5877 - 6854 1150 325 aa, chain - ## HITS:1 COG:PAB0403 KEGG:ns NR:ns ## COG: PAB0403 COG0309 # Protein_GI_number: 14520803 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Hydrogenase maturation factor # Organism: Pyrococcus abyssi # 24 325 24 326 326 175 33.0 1e-43 MEIGKVSNNDLEKYVFKNINSHRKEVLTKSSIGIDTAVLDFNGDLIVTSVDPITGANKNL GYLAINISVNDVSCQGADPVGVLISILLPAESKLEDLNKIMEDADRACRQNNLEIIGGHT EVTDAVNKIVLTTTVIARVNKNKMPKISSIKVGDVIAVSKDIGLEGTSIILEEKGNEFLS EDELRKESIDIKDLSVLREAKIAVDFNVKYMHDVTEGGIYGALWECSEAIGKGIEVDNIK IPVKDVTKKIGSHYNINIYGLISSGSMLMVFNKEDFKAYKKACFEKNIKITQIGEVTEEN KKILIDNGKKIEIPEPASDELYKII >gi|281297162|gb|ADDO01000058.1| GENE 8 6873 - 8126 857 417 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282882968|ref|ZP_06291572.1| ## NR: gi|282882968|ref|ZP_06291572.1| hypothetical protein HMPREF0628_0181 [Peptoniphilus lacrimalis 315-B] hypothetical protein HMPREF0628_0181 [Peptoniphilus lacrimalis 315-B] # 1 417 1 417 417 679 100.0 0 MNYLYIYLKTGYLYIKYKSRTEIKYLPIDIYSLKGIEDYHHFFYLLKKYIEYMEIPNNTK VILFVTNSNIQYINYKIPKIEEKDLDDFLKFDLEDYGNLNMQDYIINYDYKTYNNIMELS IYLIPIEFYSKFEEIFDKFKLNLCKILPANRIFKEDGKYIDFNLDGISFIEIKDGLWKKF DYIFIPELFVLFKNNKLETPNITNILMGKYDQASQTIDEDFSLKLINILSNYQNKITAFT SNTPVFFTGILGQADILDNLNLNKIKYINILNKLENFSYKPKSKKDINWKPLCITFVFLL LIFANLLYINKLDRDISKLSEKINKNPIHDQKVNQDLSSDSQQSANEKFLSKIIKIQELE NKDLLFTDYIYGKDFIIVKGVTQNKDNLSVFDKYTIIDKNLTLEDGLYKFEIKLKND >gi|281297162|gb|ADDO01000058.1| GENE 9 8133 - 8693 255 186 aa, chain - ## HITS:1 COG:no KEGG:CbC4_0790 NR:ns ## KEGG: CbC4_0790 # Name: not_defined # Def: prepilin peptidase, type IV # Organism: C.botulinum_BKT015925 # Pathway: not_defined # 1 181 48 230 249 81 36.0 2e-14 MIPIYSYIKLKGRCAYCKTKLPLDLLIFEITYGLIFLVSFFFYGLSVNFIIRAMEISILF LVSYCDFKTTYIYCMDIIFLIILQILYIILNQGELLQSLKFALIISFIFLIIIILTRQMG LGDMQLAFVSGLFANSYMDLLKIFTLSFVSGAIFAIFLIIFYKKGLKAQMPFGPFIAIAI LFQLLM >gi|281297162|gb|ADDO01000058.1| GENE 10 8835 - 9221 524 128 aa, chain - ## HITS:1 COG:no KEGG:Mahau_1123 NR:ns ## KEGG: Mahau_1123 # Name: not_defined # Def: hypothetical protein # Organism: M.australiensis # Pathway: not_defined # 6 114 17 134 141 65 35.0 7e-10 MKKLLNKKNKGFTLLELVIVISIIAILITMAALSYRGTNLRAQAAAHNSNVKTIKNAAVL YLIDNPESTSITVSDLKDYLEDADKIKPAKSSGADNFSINVTEGKITVSPGLVKVENNKI VSDNTTGK >gi|281297162|gb|ADDO01000058.1| GENE 11 9350 - 13030 4333 1226 aa, chain - ## HITS:1 COG:CAC1655_1 KEGG:ns NR:ns ## COG: CAC1655_1 COG0046 # Protein_GI_number: 15894932 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain # Organism: Clostridium acetobutylicum # 5 946 2 960 985 749 45.0 0 MQNKDVKINKVYVRKKDSLDFLSKSTKAEIENSLKIKLADLKVYRRYDMDISDELLDKIL YTILAEKPVDLLFYGEEADKLEKTFENPIRVSYLPGQFDQREQGLLDTIALFTDKKVKAK VSLCYDIMGVDSNDLEKIKNFLINPVDSHEVSLDDNLLEERQVSDDHLENIVFNGFTKYD DSNLEEFLNNQNLAMSLDDLKVFQTYFKKENRDPNETELAIIDTYWSDHCRHTTFNTELD IYFNEVSALDREIKKAFDLYLKLRKELNIEKPISLMSFGTILSKYLRKNGKLDDLEVSSE INACSIKIKVKLDFNGDIKYKDFLLMFKNETHNHPTEIEPIGGASTCLGGAIRDPLSGRA FVYQAMRISGAADPFTPIDKTLKGKLPQKKICTEAAKGYSSYGNQIGLATGFVDEIYHPN YVAKRLEAGAVIAAAPIENVKRLEPQKGDIVILLGGKTGRDGIGGATGSSKSHKTSSIKT ESAQVQKGNAPEERKIQRLFRREDAAKLIKKCNDFGAGGVSVAIGELSDSIEIHLDRVPL KYLGLKPREIAISESQERMAVLIGKKDKEKFLNLAKEENLEATHVATVTDTGRMIMYYKD KVICDMSYDFINSTGANRKTKVQVESENPAKFLFNSDKDAGNLKDYLGQLNIASKKNLIE LFDSSVGRATVLWPLGGKKQSVPIQAMVAKIPSFEGDVLTSSLMTYGFNPDLSIQSQYLG GYYAVIESISKLVASGASIDKIRLSFQEFYGKLTDEKAWSKPLKSLLGALEASYFFDAPP IGGKDSMSGTFEGIDVAPTLISFAVTTEDLEHIISPDFKGKGKIGLVSLDYDENGKLNLQ ELKNNFENIHKEILAGNIISACAITHKGTLPMIYENALYRSGFDVKLDDLYSPKYGSFIV EYLEDRQFIKKIGDFAENIVVNGVKLNEKLLEESYMHTFDSIYPPKASNPLKELEIKKSN KRNFKSKKCVDIPKVVIPAFPGTNSEWDTKKAFENEGAKVQVILFRNRTDEDLKESLEIF AKEIKNAQILAIPGGFSMGDEPDGSGKFIANVIRAPKVKEAIEYMLDENDGLILGICNGF QALVKTGLLPYGHIKEMEEDDPTLTFNSVNRHISSIENIKILTNNSPWLNTLEEGKVYRM PISHGEGRFYAEESVLNSLMENDQIVGVYENAPNGSALNIESIISKDGKIFGKMGHCERV DKNLYKNIDSVEYQNIFKSGVEFFKK >gi|281297162|gb|ADDO01000058.1| GENE 12 13145 - 13267 177 40 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282882986|ref|ZP_06291590.1| ## NR: gi|282882986|ref|ZP_06291590.1| formyltetrahydrofolate deformylase [Peptoniphilus lacrimalis 315-B] hypothetical protein HMPREF9131_1478 [Peptoniphilus sp. oral taxon 836 str. F0141] formyltetrahydrofolate deformylase [Peptoniphilus lacrimalis 315-B] hypothetical protein HMPREF9131_1478 [Peptoniphilus sp. oral taxon 836 str. F0141] # 1 40 1 40 40 67 100.0 4e-10 MNIINTTDTIKVAFYSIPLDFEPGWEIFASFSKLDIYFMS >gi|281297162|gb|ADDO01000058.1| GENE 13 13340 - 14815 1742 491 aa, chain - ## HITS:1 COG:SPy0713 KEGG:ns NR:ns ## COG: SPy0713 COG4690 # Protein_GI_number: 15674771 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidase # Organism: Streptococcus pyogenes M1 GAS # 2 490 9 472 472 457 48.0 1e-128 MACTTILVGKNASFDGSTLVARNEDSPAGLYSPKQILVMEAKDQPRKYKSVLSHLEFDLP ENPYRYTYCPNSDRKEGIWGAFGVNEKNVSMTATETITSNERVLGADPLVVYKKGTDKEK EVIGGLGEEDFVTVTLAYISTARQGVERLGKLLEKYGTYEMNGIAFQDENEIWWFETIGG HNWMARRVKDDSYVIMPNQLGIDYFDFADAYGKKENFMCSQSLKYLVDKYDLDLRMDKNQ DFNPRLAFGSHDDSDHTYNTPRAWVLLKKFNPTFMREHSELGPESDNLPFEMVVERKITV TDIKWALSNHYQETPYDPYKKGNVEKSKKYRPIGINRTNVLGLVQIRSNLPDELKSIEWF SYSSNVFNALVPLYINVNTIPKYYASPEIKVTTDSFYWVNRLIAAICDKNYMDTSNACER YQNLIANKAMEHINNTDKKFKEEKPKDIEEFFQAANQNFADFVEETSRDFLDKVLWIGSN NMTNSFSRSDA >gi|281297162|gb|ADDO01000058.1| GENE 14 15135 - 19412 4318 1425 aa, chain - ## HITS:1 COG:CAC2401_1 KEGG:ns NR:ns ## COG: CAC2401_1 COG1924 # Protein_GI_number: 15895667 # Func_class: I Lipid transport and metabolism # Function: Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) # Organism: Clostridium acetobutylicum # 3 659 5 663 663 779 59.0 0 MRIHMGLDVGSTTVKLVILDNEFNILYSTYRRHFSDVKKTVKDVINEVYDKYKYDSLTCA VTGSGGLSVTKLLDVDFIQEVIAGKVAISSYIPQTDVAIELGGEDSKITYLKGSVEQRMN SICAGGTGAFIDQMASLLQTDASGLNEMAKSYKKLYPIASRCGVFAKTDVQALINQGAEK EDIAISVFQSVVNQTISNLACGRPIRGNVAFLGGPLHFLNMLRERFIKTLNLKDEEIIVP ENSQIFVALGAAISSFETKSMPFIELFNRVNSNIKVIEKETTTLEPLFKNKKDLEDFIED HKTKNLREIPLSSYKGPIFIGIDSGSTTSKLVALSDNNEILYKYYGSNKGNPLEIVIEQL KEIYKKKNNEAYIASAGCTGYGEDFLKAALNLDLGEVETIAHFTAAKFFDPEVDFILDIG GQDMKSMKISDGVIESILLNEACSAGCGSFLETFARSVNLSAKEFANQATMGENPVDLGS RCTVFMNSNVKQAQKEGAEVTDIAAGLAYSVIRNALQKVIKVRDPKDLGKHIVVQGGTFL SNAVLRAFENLTGVKVTRPNIAGLMGALGMALICKEKSQGKSSIIDEEGLSNFKYKSLST NCHQCTNNCALSVNIFSNGKRYITGNRCEKGAGLVKSNEEKLPNLYKYKLERLFSYKSLD EKNAPRGIVGIPRVLNIYENYPFWHTFFTSLGYRVVLSSKSSREIYEKGIETITSETACY PAKISHGHIEDLIEKGVKFIFYPAVFYEEKQFKNADDTINCPVVAGYSEVIKNNVDKIVN GNIVFLNPFISFNDRKKLEKRLNEVFTDIPYDEIKRAVRAAYQEEDRYRLDVLNEGNKAL SYIKEKNIKGIVLCGRPYHVDPEINHGIPELINQLGLAVLSEDSVARNVEIDSRLRVLDQ WNYHSRLYRAAKFVGQYDNLELVQLNSFGCGIDAVTTDQVAEIMKAYNKIYTVLKIDEVS NLGSIKIRLRSLIEASEKREFIKKEADKLGLINEKPLLFTEEMRENYTILMPQMSPLHFE IFEPILQAEGINIKVLKDSGNKVVNEGLKYVNNDACYPSMFVVGQFIDAVKSGKYDTDHL ALLMSQTGGACRASNYVAFIRKALKDAGYGHIPVIGLSFQEIESHPGFKFTRKQIIRMGK KLVQALLYADLISRLTLATRPYELIKGSTNILRDRWIEITTSKDLSYEKEDFIRNVYTMV GEFKRLEISKIKKPKVGIVGEILVKYDPAANNHLAKVLENEGAEVVIPDLTDFMMYSFKN QEYKYRLLSKSWLPSFVCNLGIYYIEYYRKFVSKALEGTRFTKPEKIENIIDYAKKYVSL GNQYGEGWLLTGEMVELIESGTENIVCVQPFGCLPNHITGKGVIKAIRSTYEKANIIPLD FDASASSVNQYNRIKLMLSQAKKNMEQEKSIYHRGFLKNKVALEN >gi|281297162|gb|ADDO01000058.1| GENE 15 19668 - 19838 321 56 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282882984|ref|ZP_06291588.1| ## NR: gi|282882984|ref|ZP_06291588.1| ferredoxin [Peptoniphilus lacrimalis 315-B] ferredoxin [Peptoniphilus sp. oral taxon 836 str. F0141] ferredoxin [Peptoniphilus lacrimalis 315-B] ferredoxin [Peptoniphilus sp. oral taxon 836 str. F0141] # 1 56 1 56 56 72 100.0 7e-12 MAYKITDACIACGACQAECPVDCISDGDIYQINPDQCIDCGSCAGVCPVGAPVPED >gi|281297162|gb|ADDO01000058.1| GENE 16 20113 - 20640 671 175 aa, chain - ## HITS:1 COG:CAC2928 KEGG:ns NR:ns ## COG: CAC2928 COG3859 # Protein_GI_number: 15896181 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Clostridium acetobutylicum # 5 152 42 183 210 105 42.0 6e-23 MERRSTKNLVMAGLCIALSQVLSYVKVFEMPQGGSITAGSMVPIILFSLVYGFKDGFLAA IVYGLLQFVLGGTFSLHPLSIIIDYLLGFGVLGLAGIFGGKKNLTSALLGTFVACILRFV MLFLSGVLVWASYTPPGMAPWYYSLTYNGTYMIPETILTLVIVALIYSKVYDSMK >gi|281297162|gb|ADDO01000058.1| GENE 17 20846 - 22195 1406 449 aa, chain - ## HITS:1 COG:CAC2279 KEGG:ns NR:ns ## COG: CAC2279 COG0641 # Protein_GI_number: 15895547 # Func_class: R General function prediction only # Function: Arylsulfatase regulator (Fe-S oxidoreductase) # Organism: Clostridium acetobutylicum # 1 446 1 450 454 424 47.0 1e-118 MENIHKFYLNGKYIVLDIPSGSVHIVDQAVYKIIDDFKDLTRTEILSKYRDEFPLVQLEE AYDEVKFLVDEEMLFTEDAKYLKPMYNPANIIKAMCLNVAHDCNLRCKYCFASQGDFKGK RLLMDLQTGKDALDFLIKSSGYRRNLEVDFFGGEPLMNFEVVKKLVEYGRIQEKKYNKHF RFTITTNGTYLTDDKIDFINENMDNCVLSLDGRKCVNDYMRPTINGKGSFDIIVPKFKKL ISKRGDKDYFIRGTFTNENLDFSEDLMEFYKQGFKKTSIEPVVTDEKEPYAIRAEHLNKI LEEYEKLSKEYIDIKKKDKEFSFYHFIIDLSQGPCVIKRTVGCGAGSEYIAVTPDGEIYP CHQFVGEEEFKLGDIHSGIVNTKLRDTFKCANVYTNEDCPDCWARYYCSGGCHANAYYAN KNLSKPYKVGCEMEKKRIECAISIVANQD >gi|281297162|gb|ADDO01000058.1| GENE 18 22257 - 22412 233 51 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKHIKTLTTRRLKDTYAKGGCGECQTSCQSACKTSCTVGNQKCENVQLKGC >gi|281297162|gb|ADDO01000058.1| GENE 19 22422 - 22718 345 98 aa, chain - ## HITS:1 COG:TM0859 KEGG:ns NR:ns ## COG: TM0859 COG1862 # Protein_GI_number: 15643622 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YajC # Organism: Thermotoga maritima # 12 91 32 110 116 64 42.0 4e-11 MNSQFLIQFGPLVLIFLVFYFMVIRPQNKKQNEIKDMRANLKVGDRVQTIGGIIGKIIVI KEDFVVIETSGDKNKMEIMKWGVSSVFKDNSDLKKDNK >gi|281297162|gb|ADDO01000058.1| GENE 20 22774 - 23886 1313 370 aa, chain - ## HITS:1 COG:BH1228 KEGG:ns NR:ns ## COG: BH1228 COG0343 # Protein_GI_number: 15613791 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Queuine/archaeosine tRNA-ribosyltransferase # Organism: Bacillus halodurans # 4 370 6 372 379 526 64.0 1e-149 MFKFELYKKAKDSKARLGKIITDHGEIETPIFMPVGTRATVKTMASEELKKIGAQIILSN TYHLFLRPGSEIIKKAGGLHKFMHWDKPILTDSGGFQVFSLSDNRKITEEGVEFRSHIDG SKKFLSPEVSIEMQNILGSDIIMSFDECAPYPASYDYVEKSMQRTLRWAKRGKDFHKNSD HQALFGIIQGGMYKDLRKISAKEMVDMDFPGYSVGGLSVGEPKEIMNEILDYTTDFMPEN KPRYLMGVGSPDYLFEAVERGIDMADCVLPTRIARNGSVITHRGKLVIRNAKYKEDFSPL DQECDCYVCRNYTRAYIRHLFNVDEILGPRLATIHNLYFLLNMMENIRESIRGDYFLEYK NDFYKKYGYN >gi|281297162|gb|ADDO01000058.1| GENE 21 23895 - 24914 980 339 aa, chain - ## HITS:1 COG:CAC2283 KEGG:ns NR:ns ## COG: CAC2283 COG0809 # Protein_GI_number: 15895551 # Func_class: J Translation, ribosomal structure and biogenesis # Function: S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) # Organism: Clostridium acetobutylicum # 1 338 1 340 341 437 62.0 1e-122 MKTSDFSYDLPSELIAQHPAQKRDQSRLMLLNKKTGEINHKKFYNIIDYLNNGDVLVLND TRVMPARIFGHRPEKDESIEILLLNHKGDTWETLAKPGKKLKIGTEIIFSDELKAQVVDI SEDGSRFLKFIYSGIFEEILDRLGEMPLPPYIQEKLEDKERYQTVYSKEIGSAAAPTAGL HFTKELLKKIEEKGIEICFITLHVGLGTFRPVKVEDVTKHKMHSEFYIIRDDVAKKINKA KDEGRRIVAVGTTSIRTLESASDDKGYVEAKSGWTDIFIYPPYKFKCVDALITNFHLPES TLIMLVSSLSTREIILNAYNVAVKEKYRFFSFGDAMFIY >gi|281297162|gb|ADDO01000058.1| GENE 22 24901 - 26034 945 377 aa, chain - ## HITS:1 COG:sll1283 KEGG:ns NR:ns ## COG: sll1283 COG2385 # Protein_GI_number: 16329811 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Sporulation protein and related proteins # Organism: Synechocystis # 107 370 125 389 391 188 39.0 2e-47 MKKILLMFLLFLMLCPMNLLAEERLNIKVGPSNPVDKEIKLSTKANFQIISSDFSLLNNT NLKELKVTLKNGKIYLKGENFTMENFPLDGSMLINSSKEIKVENLKRSYLGAISFRINNN KLDIINNIDIENYLRGILPKEMSPSFAQEALKAQAVASRSFAISNKNKCIKNGYNLDDTT ACQVYRGSSCYNKNTDKAVEATKGQVLTYKGKVIEAIFGASSGGYTADAKDVWGGEIVDY LIAKEDPYSTYEWDAILTNQELSRLGLGEIYTIEIADYDASGRIKNITVTGANGVKNFTG NQFRNKVGSMKCKSTLFEIMNLGDSFSLKGKGFGHGVGMSQYGAQKMAKSDFKYEEILGF YFPGTELKSMEGVNENK >gi|281297162|gb|ADDO01000058.1| GENE 23 26031 - 27035 1294 334 aa, chain - ## HITS:1 COG:CAC2284 KEGG:ns NR:ns ## COG: CAC2284 COG2255 # Protein_GI_number: 15895552 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, helicase subunit # Organism: Clostridium acetobutylicum # 1 329 1 329 349 418 66.0 1e-117 MDERIIDANFSVEDKQEINLRPKWLLDYIGQDKVINKLKIFIKAAKNRKEPLDHTLLSGP PGLGKTTLAGIIANEMGVNIKVTSGPAIERQGDLASILTNLKEDDVLFIDEIHRLNKSVE EILYPAMEDYALDIIIGKGPSARSIRLDLAKFTLIGATTRSGMLTSPLRDRFGVLLNMEL YSIDALTKIVISSAEILNIPIEKEGALEIAKRSRGTPRIANRLLKRVRDYAEVVERGVIT EKVAVKGLNLLEIDKYGLDNIDRKIILTMIENFVGRPVGIDAISASIGEDRITVEDVYEP YLMQIGFIVRTPRGRLATKKAYDHFGLEYKGEEE >gi|281297162|gb|ADDO01000058.1| GENE 24 27036 - 27632 739 198 aa, chain - ## HITS:1 COG:L0266 KEGG:ns NR:ns ## COG: L0266 COG0632 # Protein_GI_number: 15674189 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, DNA-binding subunit # Organism: Lactococcus lactis # 1 198 1 197 197 115 38.0 6e-26 MLDFIKGNISEIYEGEIVLDNNDIGYLISISQLDISKLSLNEELKIYLRLILREDNISLY GFLNKDSRTLFDLLNTVSSVGPKLSMTILGALGSSQLRSAILSEDANILTKSPGVGKKTA NRIILELKDKISKKSFTEDLDLSILDSSDTIDINNDPALEALLSLGYNEYEAKIALRNVD QNQELSEIIRQALKVMAK >gi|281297162|gb|ADDO01000058.1| GENE 25 27632 - 28126 529 164 aa, chain - ## HITS:1 COG:FN0214 KEGG:ns NR:ns ## COG: FN0214 COG0817 # Protein_GI_number: 19703559 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, endonuclease subunit # Organism: Fusobacterium nucleatum # 1 161 1 161 190 163 50.0 1e-40 MRILGIDPGLAIIGYGILDFKGNSFKTVSYGQINTPAKTPITDRLEMIYSQMSELIIKFK PDDIAFEELFFNKNVKTAITVAQARGVEVLAARQFTRNVYEYTPLQIKKSLVGYGRATKE QIQYMVKVLLNLNEVPKPDDVADALAVAITHGSSINFKESFRMI >gi|281297162|gb|ADDO01000058.1| GENE 26 28164 - 28919 581 251 aa, chain - ## HITS:1 COG:no KEGG:FMG_0688 NR:ns ## KEGG: FMG_0688 # Name: not_defined # Def: hypothetical protein # Organism: F.magna # Pathway: not_defined # 38 251 29 241 241 70 25.0 8e-11 MSLANIKISNNKNYAFKDIKNYLVENFLYNNETDCINILLNIYNIEESIENIFPRYVSLE NLRLDIIKLYKEKRGIELIARNLSSLIHDDINRLELYLYLEGYRRGFNSSKLINKLEMIA LNYLSIEELYSRKKLYNYEFKNKDVVIFKKELFKSLRRDRFTRSYISSIVRGVDKNLLRK KIFNINSHLDLQLVFSDDSSARFKEMNSYLSVNEISNLYKKILKFLYVDGYRILTNGYWD GINDKVMKRYK >gi|281297162|gb|ADDO01000058.1| GENE 27 29010 - 30005 1302 331 aa, chain - ## HITS:1 COG:FN0776 KEGG:ns NR:ns ## COG: FN0776 COG2502 # Protein_GI_number: 19704111 # Func_class: E Amino acid transport and metabolism # Function: Asparagine synthetase A # Organism: Fusobacterium nucleatum # 10 331 7 327 327 367 59.0 1e-101 MINNSEAKYLDLRETQIAIKSLKDYFQRDLASTLNLARVSAPLFVRPETGLNDNLSGEKA VNFNIRKYDINVEIVQSLAKWKRNALKKYNFGMYEGIYADMNAIRAEESLDNIHSSYVDQ WDWEKIIGVSDRNDDYLHLVVKEIFSVFKRSEEYINQTYPYILSKKLPEKIFFVSSQELE DAYPDLSPKEREHEITKDKKAVFIQGIGKKLKSGKPHDLRSPDYDDWDLNGDIIFWDSVL NDSIELSSMGIRVDEDSIVSQCKICGNEDRLALPYHRDIIEKNLPYTIGGGIGQSRICMY FLEKKHIGEVQVGVWDELTRQQAKKDGIILL >gi|281297162|gb|ADDO01000058.1| GENE 28 30096 - 30746 412 216 aa, chain - ## HITS:1 COG:no KEGG:FMG_0687 NR:ns ## KEGG: FMG_0687 # Name: not_defined # Def: hypothetical protein # Organism: F.magna # Pathway: not_defined # 1 216 1 210 213 132 39.0 1e-29 MLKILANTHKVIATIIHQRIKQDYNINLNLNKIQWGSVCPDVLPYYKLIRHYQKESINFI SKEISNLIYFCRYSNLQENTNPILINYLSKKLGIISHYLSDYCCYPHAYRMTFFDDMKAH IKYESDLNVYVLSQKFKEENYEYVINTKNLDLFENVDKKLKVRVKEYIETVICEYKNAPI SFDTDMNFALDISSKIASFVIESALVYNEDLEIQFS >gi|281297162|gb|ADDO01000058.1| GENE 29 30852 - 32489 1707 545 aa, chain - ## HITS:1 COG:CAC1556 KEGG:ns NR:ns ## COG: CAC1556 COG3858 # Protein_GI_number: 15894834 # Func_class: R General function prediction only # Function: Predicted glycosyl hydrolase # Organism: Clostridium acetobutylicum # 194 539 102 443 446 132 28.0 2e-30 MKKFFIGIFILLALAAELFFFVENRGNNKQSDMYEGLSFLYEDKLVDKKDYYRQEDGQLY ISYDFIKENIDKNINFNESENKIYINNSKGSKVLPLDSKEANFSGHKVILRSPVKKIDGK LMLPIESFIYDYNFDLRYDKDNKSYVLDNLSISHKIATTTTDVNLREMSKKRSKLIKKVP KNSKVFLYDQENSYYRVREYNGYAGYAHKDYLDNITEIPPHELNTQAKKPLNITWDYTYA GHSEDKIANIKNIPGVDIIIPTWFSIMNGNGDLIDRGNIDYVNRYRAMGIDVWGYLDNSF DAEITNKALSNENSRKKIIDKTIELCKKYGMKGLNIDFEGFKISDRDLFTTFVKELSEKA KSENIMVSVDVTPQISSDVTKEPYDRKTLAEICDLVVVMAYDQHWSSSEKSGSVAEYPWV EGSINVLFKSIPRDKMILGVPLYSRLWCEKNGKVSSKAISMDQTNNIIGSKGLTPKWNDE CGQFYVEFNEGDALYKIWLEEKNSLALKTSLVNKYKLRGLASWRLGFETFDIWDAINNEI KDLKY >gi|281297162|gb|ADDO01000058.1| GENE 30 32544 - 32891 403 115 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229231852|ref|ZP_04356280.1| LSU ribosomal protein L19P [Cryptobacterium curtum DSM 15641] # 1 112 1 112 114 159 66 2e-38 MDIIRSIEDEFIKDNLPEFRVGDTIQVHYRIIEGTRERVQVFEGIVIKKQGKSSRKTFTV RRISYGIGVERTFLINSPRIAEIKVVRKGKVRRAKLYYLRDRQGKAAKVKEKINY >gi|281297162|gb|ADDO01000058.1| GENE 31 32878 - 33618 611 246 aa, chain - ## HITS:1 COG:CAC1758 KEGG:ns NR:ns ## COG: CAC1758 COG0336 # Protein_GI_number: 15895035 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA-(guanine-N1)-methyltransferase # Organism: Clostridium acetobutylicum # 1 236 5 239 242 240 52.0 1e-63 MKISVLTLFPEFINSLRNYSIVGRAIKDNIVELEVIDIRDFAINKYLQVDDYPFGGGPGM LMQVSPIVQAIESCKSQKAKVYFLSAHGKTLNQDKLKELKNEEHIILLNGHYEGIDARVI DNYVDEEISIGDFVLTGGEIGSMVLIDGVTRLLDGSLSSEESYTDESFYNGLLEYPQYTR PRDFKGLKVPDILLSGDHEKIRKYRLKESLRITLKKRPDLLEKKELNNEEKILLKEIREE EENGYN >gi|281297162|gb|ADDO01000058.1| GENE 32 33615 - 34115 489 166 aa, chain - ## HITS:1 COG:CAC1757 KEGG:ns NR:ns ## COG: CAC1757 COG0806 # Protein_GI_number: 15895034 # Func_class: J Translation, ribosomal structure and biogenesis # Function: RimM protein, required for 16S rRNA processing # Organism: Clostridium acetobutylicum # 6 152 3 148 166 82 33.0 4e-16 MKSKNDLTCIGEIINTFGIKGELKVRPFTDNIKRYSKLDYILLGQNKDSYEISSVRYDKG FVFLKLKGHDDINDVLKFKNSYLYIYDKDREKLPQGTFYVWDLIGKEVYNSNNEFLGILE KIDSYPANDVFVIKNENFHYYIPNVKEFVKDIGDVIIADPIEGMRE >gi|281297162|gb|ADDO01000058.1| GENE 33 34099 - 34338 401 79 aa, chain - ## HITS:1 COG:BH2482 KEGG:ns NR:ns ## COG: BH2482 COG1837 # Protein_GI_number: 15615045 # Func_class: R General function prediction only # Function: Predicted RNA-binding protein (contains KH domain) # Organism: Bacillus halodurans # 1 74 1 74 76 63 48.0 9e-11 MVELIEYIAKSLVDEPEKVKVSSQEGEDVNNILLQVSSTDMGKVIGKQGRIAKAIRSILK AVSLKEEIKVNLEIDEIQE >gi|281297162|gb|ADDO01000058.1| GENE 34 34351 - 34647 308 98 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169824223|ref|YP_001691834.1| 30S ribosomal protein S16 [Finegoldia magna ATCC 29328] # 1 80 1 80 83 123 71 2e-27 MAVKIRLRRMGTKKKPFYRVVVADSRSPRDGRVIEEIGYYDPLTQPKKFVVNSEKANTWI LNGAKPTDTVDRLFRENSVYINKEASKNEEAQEEPINK >gi|281297162|gb|ADDO01000058.1| GENE 35 34696 - 36033 1753 445 aa, chain - ## HITS:1 COG:CAC1754 KEGG:ns NR:ns ## COG: CAC1754 COG0541 # Protein_GI_number: 15895031 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal recognition particle GTPase # Organism: Clostridium acetobutylicum # 1 443 1 449 449 494 64.0 1e-139 MVFESLSEKLQNTLNKLTGKGKLTEKDIDAAMREVKLALLEADVNFKVVKDFIKNTKERA LGSQVLESLTPGQQVIKIVNDELKNLMGKEQVKIDYSKKPTVILMCGLQGAGKTTTAGKL ANKMKQEGKRPLLVACDVYRPAAIKQLQVVGKSVDVPVFTMGDKIDPVDISKASLEHAKK NGNDVLIIDTAGRLQIDEKLMQELKNIYDALEPSEVLLVLDSMTGQEAVNVADTFDDTLK LTGVILTKLDGDARGGAALSIRAVTDVPIKFIASGEKMDNIEVFHPDRMASRILGMGDML SLIEKAEAIVDEKKAKELEEKIINQTFTFDDFLDQMMQIKKMGPLEDILGMLPGVNSKAL KGVKLPEGELAKVEAIIRSMTKKERIKPDIIDSSRRKRIALGSGTSPAEVNKLIKQFKDL RKLMKQFGNMSKGMKKKRFKMPFSF >gi|281297162|gb|ADDO01000058.1| GENE 36 36044 - 36397 410 117 aa, chain - ## HITS:1 COG:BH2485 KEGG:ns NR:ns ## COG: BH2485 COG2739 # Protein_GI_number: 15615048 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 1 91 1 91 109 70 53.0 7e-13 MEDKFFRINTLMDFYGSLLPQKQRRVMSMYYIYDCSLNEIANEFNISKQAVSDNMKRAEN NLENYEKKLKLIDITEKRDKETLLKKEKLEKYFDEFEKNSREYDKVLYKKIKTLILE >gi|281297162|gb|ADDO01000058.1| GENE 37 36500 - 37393 777 297 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762490|ref|ZP_02169555.1| ribosomal protein L28 [Bacillus selenitireducens MLS10] # 1 296 21 320 336 303 49 8e-82 KLMSGLDKTRKEVGIKINTVMGNYVKIDDDMLEDLEDILISADVGMDTTMKLIDNLRETI IKEKINDPSKVKDILKSETKKLMNEELNKGISDISPSIILVVGVNGVGKTTTIGKLAKRY KDEGKSVLIAAADTFRAAAIDQLKEWGNRVNVDVISHSEGQDPAAVVFDAITAAKSRNAD ILIVDTAGRLHNKANLMKELEKINRIIDKKYPEAYRETLLVLDATTGQNAMNQAKTFKEA VNITGIALTKLDGTAKGGVVIALQSELQIPIKLVGVGEGIYDLQDFNLDNFLQGIFG Prediction of potential genes in microbial genomes Time: Mon Jul 18 12:50:13 2011 Seq name: gi|281297160|gb|ADDO01000059.1| Peptoniphilus lacrimalis 315-B contig00006, whole genome shotgun sequence Length of sequence - 802 bp Number of predicted genes - 2, with homology - 1 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 18 - 551 408 ## gi|282882994|ref|ZP_06291597.1| conserved hypothetical protein - Prom 589 - 648 5.0 + Prom 547 - 606 6.4 2 2 Tu 1 . + CDS 648 - 767 71 ## Predicted protein(s) >gi|281297160|gb|ADDO01000059.1| GENE 1 18 - 551 408 177 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282882994|ref|ZP_06291597.1| ## NR: gi|282882994|ref|ZP_06291597.1| conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] # 1 177 1 177 177 329 100.0 4e-89 MKKISLIFVFIFLIQIVLVFEKNFINSTYIKSLSGIDNKLSDNNYERVVEIEGSKFLGRQ TFSTAELIRNSSKFNHVVTDFLTDAGAFNDVETVDGIINISIDATRVNWYSVFTIDMPGY IEFSRYLKVVYRVDRLNEDRKFIQSAKLCIEAHQYYYNYPDGGYLDNGVKIWSAEVK >gi|281297160|gb|ADDO01000059.1| GENE 2 648 - 767 71 39 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MISFFVFLLLKLDSNIAKRSQSNLAIRKSYKINHNLPII Prediction of potential genes in microbial genomes Time: Mon Jul 18 12:50:34 2011 Seq name: gi|281297133|gb|ADDO01000060.1| Peptoniphilus lacrimalis 315-B contig00036, whole genome shotgun sequence Length of sequence - 25658 bp Number of predicted genes - 26, with homology - 25 Number of transcription units - 13, operones - 9 average op.length - 2.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 40 - 83 6.4 1 1 Op 1 . - CDS 87 - 656 687 ## SPD_0922 hypothetical protein 2 1 Op 2 . - CDS 699 - 1667 1419 ## COG0280 Phosphotransacetylase - Prom 1693 - 1752 9.0 + Prom 1647 - 1706 8.8 3 2 Tu 1 . + CDS 1798 - 2214 560 ## gi|282883011|ref|ZP_06291613.1| conserved hypothetical protein + Term 2218 - 2256 2.1 - Term 2196 - 2252 6.8 4 3 Op 1 . - CDS 2299 - 2895 615 ## gi|282882998|ref|ZP_06291600.1| putative lipoprotein - Prom 2920 - 2979 5.2 - Term 2911 - 2940 2.1 5 3 Op 2 1/0.000 - CDS 2985 - 3704 171 ## PROTEIN SUPPORTED gi|163797523|ref|ZP_02191474.1| 50S ribosomal protein L9 - Prom 3769 - 3828 7.2 6 3 Op 3 . - CDS 3896 - 4660 882 ## COG1073 Hydrolases of the alpha/beta superfamily - Prom 4686 - 4745 10.7 + Prom 4658 - 4717 10.8 7 4 Op 1 4/0.000 + CDS 4794 - 7349 2562 ## COG2217 Cation transport ATPase 8 4 Op 2 . + CDS 7346 - 7615 312 ## COG1937 Uncharacterized protein conserved in bacteria + Prom 7652 - 7711 7.6 9 5 Tu 1 . + CDS 7739 - 9316 1453 ## COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain + Term 9319 - 9351 1.5 - Term 9306 - 9339 1.7 10 6 Op 1 . - CDS 9345 - 10082 893 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 11 6 Op 2 . - CDS 10094 - 10504 557 ## COG1321 Mn-dependent transcriptional regulator - Prom 10555 - 10614 11.2 + Prom 10606 - 10665 10.8 12 7 Op 1 . + CDS 10768 - 11406 703 ## COG0637 Predicted phosphatase/phosphohexomutase 13 7 Op 2 . + CDS 11403 - 12002 255 ## COG4767 Glycopeptide antibiotics resistance protein + Term 12164 - 12191 -0.8 + Prom 12386 - 12445 6.4 14 8 Tu 1 . + CDS 12493 - 13440 796 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily + Term 13497 - 13535 -0.4 15 9 Op 1 . - CDS 13614 - 15164 1760 ## Bsph_1896 Ig-like, group 2 16 9 Op 2 . - CDS 15231 - 16532 1454 ## COG0213 Thymidine phosphorylase - Prom 16554 - 16613 10.9 - Term 16590 - 16622 2.3 17 10 Op 1 . - CDS 16647 - 18653 3243 ## COG3808 Inorganic pyrophosphatase 18 10 Op 2 . - CDS 18673 - 18903 272 ## gi|282883016|ref|ZP_06291618.1| preprotein translocase, SecG subunit - Prom 18928 - 18987 10.5 + Prom 18988 - 19047 10.0 19 11 Op 1 6/0.000 + CDS 19260 - 20144 647 ## PROTEIN SUPPORTED gi|148988856|ref|ZP_01820271.1| 50S ribosomal protein L9 20 11 Op 2 . + CDS 20137 - 20673 484 ## COG1045 Serine acetyltransferase + Prom 20675 - 20734 8.5 21 11 Op 3 . + CDS 20756 - 20875 61 ## 22 12 Op 1 . - CDS 20839 - 22011 1192 ## COG1160 Predicted GTPases 23 12 Op 2 . - CDS 22011 - 23426 1489 ## COG1060 Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes 24 12 Op 3 . - CDS 23464 - 24492 852 ## COG0502 Biotin synthase and related enzymes 25 12 Op 4 . - CDS 24492 - 24728 366 ## EUBREC_0233 hypothetical protein - Prom 24756 - 24815 10.4 + Prom 24717 - 24776 12.3 26 13 Tu 1 . + CDS 24861 - 25496 441 ## gi|282883014|ref|ZP_06291616.1| putative lipoprotein Predicted protein(s) >gi|281297133|gb|ADDO01000060.1| GENE 1 87 - 656 687 189 aa, chain - ## HITS:1 COG:no KEGG:SPD_0922 NR:ns ## KEGG: SPD_0922 # Name: not_defined # Def: hypothetical protein # Organism: S.pneumoniae_D39 # Pathway: not_defined # 1 187 16 199 203 105 34.0 8e-22 MKLLYFLQKEKNLNIGLFDDFKDIKKFIEKLLNIEITTFDDIYHISFYRDSLKDYEDIEI NGNLIPISKYAFAPHNEIYFGISDLTDLSLKGNGIIEGFSVIENYAIDNKDLKAYIDQRE KAFERVQKALKSRGYKVNRELQDSEDGEAITISGKGERWFFAHLDPSFVDSLPEDEKEFE KFIDEELEN >gi|281297133|gb|ADDO01000060.1| GENE 2 699 - 1667 1419 322 aa, chain - ## HITS:1 COG:BS_pta KEGG:ns NR:ns ## COG: BS_pta COG0280 # Protein_GI_number: 16080818 # Func_class: C Energy production and conversion # Function: Phosphotransacetylase # Organism: Bacillus subtilis # 3 322 4 323 323 372 59.0 1e-103 MSLIESLSEKLKGKNVKIVFPEGNDSRVLRATIRLKNDGVIEPIVLGNVEEIKKLAQKEG VNLSDLQIVDPKNFEEFDKMVDAFVQRRKGKATVEQARDILKDPNYFGTMYVYMGKADGM VSGANHTTAETVRPALQIIKTKEGIKRTSGAFVLLRDDKMYVAADCAINTDLDEEGLAEV AVVTEETARKFGLEPRIAMLSFSSHGSAKHDRVTLVANATKLAKEKNPDMLIDGELQFDA AFVKEVADKKVPDSPLHGSANVFIFPNIEAGNIGYKLIQRFGGYKAIGPILQGLNRPVND LSRGCVEDEVYDLAIVTAAEAL >gi|281297133|gb|ADDO01000060.1| GENE 3 1798 - 2214 560 138 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282883011|ref|ZP_06291613.1| ## NR: gi|282883011|ref|ZP_06291613.1| conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] hypothetical protein HMPREF9131_0755 [Peptoniphilus sp. oral taxon 836 str. F0141] conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] hypothetical protein HMPREF9131_0755 [Peptoniphilus sp. oral taxon 836 str. F0141] # 1 138 1 138 138 237 100.0 2e-61 MSKIIKEFFKVETIDALPTGKIEDILNLVNDTYLEVMARNHQVDYDNLSMDDIKEELHKN ILENFKATLMSFDKKELKSFNEFYQGIVDYSDEMVYVNLKKFLSLGFIFLFLSKSGGYFT FVMPDPLIDQFEELLRTS >gi|281297133|gb|ADDO01000060.1| GENE 4 2299 - 2895 615 198 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282882998|ref|ZP_06291600.1| ## NR: gi|282882998|ref|ZP_06291600.1| putative lipoprotein [Peptoniphilus lacrimalis 315-B] putative lipoprotein [Peptoniphilus lacrimalis 315-B] # 12 198 12 198 198 330 100.0 3e-89 MKKIISILLIIMTLTACNFSNKSKFMMSTDTGITDQKKLQTYQAIIPDLKFYKAKVPENA ISYKLSIVRVKNGKIDEKNTSSFSGDFKYIKNFSKNSFSFAGGLLENEFIFSLGNGDISS IKPDVNVDKKEARAISFNEEFEKIELNKDYILMQVDYFPASKGTKTVDVKTLDEFEGQAD HEYYLMCLKFMDKSSEFN >gi|281297133|gb|ADDO01000060.1| GENE 5 2985 - 3704 171 239 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163797523|ref|ZP_02191474.1| 50S ribosomal protein L9 [alpha proteobacterium BAL199] # 1 212 3 209 259 70 26 1e-11 MRKSAIITGASGDIGGAIARKFASEGIDLVLQYRNEEKIQNVIDTLKDYDVEILKVKEDI ITYEACQELVNKAMEKFGKIDILVNNAGRILDASTVKMSEENFKKVIDLNLISVFYMTKL VGIEMLKREQGKIVSLASVSGIMGTYGQCNYVASKAAVMGMTKTWAREFGRKGINVNAVA PGFIVSHMTEGLEDMYVKQIPMKRFGKVDEIANGIYFLCSDQATYIQGQTLVIDGGLTL >gi|281297133|gb|ADDO01000060.1| GENE 6 3896 - 4660 882 254 aa, chain - ## HITS:1 COG:lin2363 KEGG:ns NR:ns ## COG: lin2363 COG1073 # Protein_GI_number: 16801426 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Listeria innocua # 32 227 26 225 250 76 31.0 6e-14 MEYLINNYCKMNKINICDINLFVLEPQKENFKIKNLIFYHGWSSSAENQLFRANIFASFG YRVFLPDAIFHGQRGHIDYDDKNTGAKYFVRAISQNIRESSQIISYIKENFKEKEIGVSG HSMGAISSGGIYTVNKDLNMAMIFNGIIDYDYIVDRAKKSIVSENADKEFTEACDFLIKV NPIANMDKLKNRPLILFNGNEDNVINPDIEENAFKKLYKIYDNKELIKFKRFELTTHQLT TPMLEESIKIFKDL >gi|281297133|gb|ADDO01000060.1| GENE 7 4794 - 7349 2562 851 aa, chain + ## HITS:1 COG:CAC3655 KEGG:ns NR:ns ## COG: CAC3655 COG2217 # Protein_GI_number: 15896888 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Clostridium acetobutylicum # 7 746 78 813 818 623 47.0 1e-178 MKEKFDISGMTCAACSANIERAVNKISGVNKAEVSLMTNTMNVDFDKDKTDIDEIIKAVS NIGYGANLQAQKSQIIPNQNISQEENLRKRFFLSLGFLIALMYVSMGHMIGLALPDFLTG TKGAISFAFLQFLLTLPVIFINRTFFISGFKGLKNFAPNMDSLVALGASASLIYGIYAIF KMSIGFGTSNLSLVDAYRENLYFESSAMILSLITLGKYFEEKSKNKTKNSIKSLMDLAPK MANVVIDGEIVSKKVEDIKLGDIILVKAGEKIPCDGIIVEGQTSINQAAVTGESIPLYKK VNDRVISATINGSSPFKFKATKVGQDTTISKIISMVSVANQSKAPISKLADKISGVFVPT VIFISIMTFIIWFLIDKNVEKALNFAISVLVISCPCALGLATPVSIMVATGMSAKQGLLF KNAEVLENLHKIDSIVLDKTGTITNGKAQVTDIFTSMDKNKFLDLIISLEKNSEHPLSKS IIDLKKDYPTKDLKVENFKSIAGRGIEAEISGKKYLAGNLPLMEEKNIDISKYEKQAKEL QKSGKTLMYFSDEKEIIGLVALIDLPKKNSKKAIKNLKDLGYKIIMLTGDNIYTANAIKE LLNIDKVYAELMPEDKIKIISKLQKEGKKILMVGDGINDAPALAKADIGMAIGGGTDVAI ESSDVVLMSQDLLDISKAIEISQATIKNIKGNLFWAFFYNVCGIPLAAGILYNSLGLKLN PMFASVAMSFSSVFVVTNALRLYKFKSRIIDNNNDKKFQTQDNKSKLNSQEFKNINEKGE DSMEKLLKIEGMSCNHCVNHVKEALEGLDGVKEASVSLEKNQARVILDKEVSEKSLKDVV KKAGYELTSIK >gi|281297133|gb|ADDO01000060.1| GENE 8 7346 - 7615 312 89 aa, chain + ## HITS:1 COG:CAC3656 KEGG:ns NR:ns ## COG: CAC3656 COG1937 # Protein_GI_number: 15896889 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 1 88 1 86 88 65 44.0 2e-11 MKANKEVQIKKLKTVRGQIDGLIKMMEDNRYCLDISNQLMASISILKNINKDVLSAHLNG CLRDAYGASQEDIDEKIEEINKLIIKLSK >gi|281297133|gb|ADDO01000060.1| GENE 9 7739 - 9316 1453 525 aa, chain + ## HITS:1 COG:FN1559 KEGG:ns NR:ns ## COG: FN1559 COG3263 # Protein_GI_number: 19704891 # Func_class: P Inorganic ion transport and metabolism # Function: NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain # Organism: Fusobacterium nucleatum # 3 525 5 527 527 355 42.0 1e-97 MHLLFIAIILILALIAIRISNKSGIPALLLFLTLGILFNFFGVNFKDYHLADKIANLSLM IIMFYGGFGTNWSMARPVAGPAITLASLGVVFTSIITGYFSYKFLGFDFYQAMLLGSVVG STDYASVSNILVSKNLNLKYNTASLLEIESGSNDPTAYTLTIVFISIILKEKISIPLLIF KQIFFGIGLGFLMGYIFMKIIKTLKLSEDGLFSVFIAAVMLGTYSLCDFIGGNGYLALYI LGIYIGNKEFTHKKEVVFFYDGVTNLVQIALFFLLGLLSDPTKIFHSLFYGFILMIFMLL IARPISVFLLLKVFKTKFKQNLLISIAGIRGAAAIAFAIMAVNSGANLGIDLFHIVFVIC LFSSLIQGSLMPYLTRKLSMFDPNDTVLNTFNYYQIKSPFGFIISRIKKGSSWVNKRIKE INPHFDLIIAKIERDGKTIIPKGHTIIKEGDTLVIGGEMFFDESGKELEEIKLSNGHPWV NKYIKDLHINKTTLIVMIVRNNKEIIIPNGQTQLNENDRIVILKK >gi|281297133|gb|ADDO01000060.1| GENE 10 9345 - 10082 893 245 aa, chain - ## HITS:1 COG:SA1074 KEGG:ns NR:ns ## COG: SA1074 COG1028 # Protein_GI_number: 15926814 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Staphylococcus aureus N315 # 1 244 3 245 246 198 43.0 8e-51 MKETILITGSSRGIGRATALSFFDENLNIVINYIKEKEKAEEVVSILKSRGINSMAVGCD VSDFDQVKDMFKTIEKNFGGVDKLVNNAGIAPFPKLCQEVEDSEWKRVFEVNVGGQFNTC RLAVPYMVSQKRGAIVNLSSVWGQTGGSMESTYGASKGAVIAYSRALARELGPSNIRVNV VAPGCILTDMTAILSKETLDGFAQEVPLMRNGKAEEVAQVINFLLSSKASYMSGQVLGVN GGYYD >gi|281297133|gb|ADDO01000060.1| GENE 11 10094 - 10504 557 136 aa, chain - ## HITS:1 COG:SP1638 KEGG:ns NR:ns ## COG: SP1638 COG1321 # Protein_GI_number: 15901474 # Func_class: K Transcription # Function: Mn-dependent transcriptional regulator # Organism: Streptococcus pneumoniae TIGR4 # 1 128 1 129 216 103 43.0 1e-22 MSPSREDYIKNIFKGIENAGFAQNKDISNYLEVSKPSVTEMIGKLKDDDLVYTENSKIYL TEQGLKIGEKLISIHRLWEKFLEEVLDFPADQVHNQADLLEHVTSDELVESLNKYLNYPK NCPHGRIIYINAKENI >gi|281297133|gb|ADDO01000060.1| GENE 12 10768 - 11406 703 212 aa, chain + ## HITS:1 COG:CAC3231 KEGG:ns NR:ns ## COG: CAC3231 COG0637 # Protein_GI_number: 15896477 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Clostridium acetobutylicum # 1 209 5 213 215 86 28.0 3e-17 MKLIIFDLDGTLVDSMGYWRNLSTDFLKKMGLTLKREDEDYMTTLNLKLSTSFLIDKFNL DMSYDSLYNTFKEQIVDFYSNKVQLKDGALETLEFFKDKSYKVVIGTSTNKEFAKIPIEK YDLKKYIENIYTVESQTYAKNDPNFFKSICQENNILPEDAILVDDSVIALRNAKKAGLVT VGIYDENSKDTFSYIKAENPYSIIKLTELKNI >gi|281297133|gb|ADDO01000060.1| GENE 13 11403 - 12002 255 199 aa, chain + ## HITS:1 COG:CAC0829 KEGG:ns NR:ns ## COG: CAC0829 COG4767 # Protein_GI_number: 15894116 # Func_class: V Defense mechanisms # Function: Glycopeptide antibiotics resistance protein # Organism: Clostridium acetobutylicum # 95 184 50 143 308 65 37.0 6e-11 MKLFLFFFTRSLVAFLFTFIGFSQIRLHFFRDFRKKSNGQREFFMCLLASYLVVLAIILF TPNSFISSHGIDLTNDHFNFVGNFKDRISAGNWGVNLIPFRTIKSYIKYSGFLHSLINIL GNVLIFLPLGYIIPIIYNRYKNFTKFIYLTISISIFIEFIQFFIGRSVDIDDLILNTLGG ILGYLYYKKHSKKLDKIGR >gi|281297133|gb|ADDO01000060.1| GENE 14 12493 - 13440 796 315 aa, chain + ## HITS:1 COG:CAC1045 KEGG:ns NR:ns ## COG: CAC1045 COG0697 # Protein_GI_number: 15894332 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Clostridium acetobutylicum # 4 314 6 314 317 164 38.0 3e-40 MNLIYVFLAAIFFSSMEVAIKLSGGAFNPIQLNLLRFFIGALILYPISKRELKKADYKLK KNDYIGFAITGLLCIVFAMTCYTLSVYYLDAHVAGILFCSNTFFSMILGHLFTKEKISKN VFIGIVIAFIGFLVLINPLNFKGSLFGFIVNILSAFSFSLYSLVGKKLNAHKPIKSPTIT SFTFLFGCVELLILVLISRISSVSEFFIGIGLDKFASIPIISGINKDNILILLYIAIFVT GMGFACHFFAVEKNPIAISSLVFFIKPILAPIFSLIFLKERISTNEIIGVILIAIASSII FMEKRNLEKRVSLEN >gi|281297133|gb|ADDO01000060.1| GENE 15 13614 - 15164 1760 516 aa, chain - ## HITS:1 COG:no KEGG:Bsph_1896 NR:ns ## KEGG: Bsph_1896 # Name: not_defined # Def: Ig-like, group 2 # Organism: L.sphaericus # Pathway: not_defined # 337 514 679 855 871 112 35.0 3e-23 MKKLIVIFLSIFLIFIGVYADEDIQVVLEQPAVSSAKSGENLLYNLNIKLPKDYKKKYES FSVSVLMDGNLKVLSTDLVGAEVNPGKINLKTTENSKTSQNIISLNVDDISKIDKENLNL KINTKVRKEIKSGENLENSFVLSYQDRKGYTGSSQKNLESSTKAGNIELKIDDIYANSKT IKGKSEKNATIVLYKGKDELKRVKADKDGNFSIDVNPFSEGEKIRLYAYYEDDNVYVDYI VKGVDESYKTKDVKKSSEEVINSISNMKKISDYVAFAKGLPTAKATKEEEARLKAAIAGG EYLQVKKVVKDEDIGKVFNELQEAIKGVRKPYMVGSEGKFNPDKAMTRAEVCQVLSKIIM GNKTVSDFSSFKDVDQEKWYAGAVTAIESRKLISGYSDGTFRPEKEIKRSEFAMIIYNYL KLDESSESVKFSDVSNNHWAKKAIDTLVANKIMVGTDSKHFNPDGKLKRCQAAVIVNNIL DRKVNKEFLKTYSKNPYKDLSDKHWAYYQILEVSGL >gi|281297133|gb|ADDO01000060.1| GENE 16 15231 - 16532 1454 433 aa, chain - ## HITS:1 COG:SA1938 KEGG:ns NR:ns ## COG: SA1938 COG0213 # Protein_GI_number: 15927710 # Func_class: F Nucleotide transport and metabolism # Function: Thymidine phosphorylase # Organism: Staphylococcus aureus N315 # 1 398 14 411 446 408 55.0 1e-113 MRILDIIEKKKLGEQLTKEEISFWIKGLCSGDIPDYQTSALLMAIRLKGMNQEETVNLCQ EMVHSGDILDLSDIDGIKADKHSTGGVGDKTSLVLGPLVASCGLKIAKMSGRGLGHTGGT LDKLESISGLNIFLSEDEFKKQVAEIGIAIVGQTGELVPADKKLYALRDVTATVDSIPLI SSSIMSKKLAAGSDTILLDVKYGKGAFMHTVEDAKKLAKTMISIGKSLGKNTMAMITDMN APLGRTIGNALEIKEAVLTLKGQGEESFTEFIISAAKIMLMQGKITSDEAEADKMLRENI KNGKAFLKFKEMVRSQGGNVDQIDDLDLLPKSKHIEDMKSKEEGYISKINSEELGILSMK LGGGRKKKEDKINYAVGIIMDKKVGDYVKIGDSLGQIHYDDLLDKQLIDSFYQAYEFSKN KVEKIKVIEEILK >gi|281297133|gb|ADDO01000060.1| GENE 17 16647 - 18653 3243 668 aa, chain - ## HITS:1 COG:MA3879 KEGG:ns NR:ns ## COG: MA3879 COG3808 # Protein_GI_number: 20092675 # Func_class: C Energy production and conversion # Function: Inorganic pyrophosphatase # Organism: Methanosarcina acetivorans str.C2A # 3 660 13 685 685 581 55.0 1e-165 MNLLLLAPIAGVLALLFAGYKASFVSKQDPGNDRMKEISSYISQGAMAFLTREYKALVVF VIVLALILAIGLHSIQTAVCFVFGALFSVLAGFVGMKVATKANVRTSNAAMTHGLGKALD IAFSGGAVMGMCVVGLGIIGIIGAYFFADGSVEIITGFSLGASSIALFARVGGGIYTKAA DVGADLVGKVEAGIPEDDPRNPAVIADNVGDNVGDVAGMGADLFESYVGALLSVITLGVV AYGENGVLYGTLIAAFGIVASIIAAFFVKGDKNPQKALNSGEYVAAAVTMVAAALLSNYI FASFKPFIPVIIGIVVGLIISKFTEYYTADQYKPVQRIAAESETGSSTNIIAGLSVGMSS TVWPIVVIALGIIASYIGAGGNIEPLYGLYGIALAAVGMLSTTGMTIAVDAYGPIADNAG GIAEMCELPEEVREITDSLDSVGNTTAAIGKGFAIGSAALTALALFVSYINATGLTGIDI SKPAVIAATFIGGMLPFAFSALTMSAVGNAASAMIDEVRRQFKEIPGIMEGEATPEYAKC VDISTTAALREMIVPGLIAVVVPIVVGLLLGTEALGGLQAGALVTGVLMAIFMSNAGGAW DNAKKYIEGGKHGGKGSEAHKAAVTGDTVGDPFKDTSGPSLNILIKLITVVSLVFAPLFV AYGGILIK >gi|281297133|gb|ADDO01000060.1| GENE 18 18673 - 18903 272 76 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282883016|ref|ZP_06291618.1| ## NR: gi|282883016|ref|ZP_06291618.1| preprotein translocase, SecG subunit [Peptoniphilus lacrimalis 315-B] preprotein translocase, SecG subunit [Peptoniphilus sp. oral taxon 836 str. F0141] preprotein translocase, SecG subunit [Peptoniphilus lacrimalis 315-B] preprotein translocase, SecG subunit [Peptoniphilus sp. oral taxon 836 str. F0141] # 1 65 1 65 76 80 100.0 4e-14 MKTLLSIIIIIAGIIVTLIIAQMETEQAGLGTLQGASDTSLWGQHKGSSKKEIQNKIVIV SSIIFAVVLLVLAALS >gi|281297133|gb|ADDO01000060.1| GENE 19 19260 - 20144 647 294 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148988856|ref|ZP_01820271.1| 50S ribosomal protein L9 [Streptococcus pneumoniae SP6-BS73] # 1 292 4 304 308 253 46 7e-67 YMKLLETIGKTNLVQLENISKNIYVKVEKSNPAGSIKDRAAYQMIMGAIERGELKEGMKI VEPTSGNTGIGLALIGRTLGFPVVLTMPSSMSIERVKLIKAYGAEVILIKEGGMAGSVEK AKELVENGAYYMPNQFDNKDNALAHYKTTGPEIYNDLKDINGFVAGFGTGGTVTGVGRYL KEQDKNIKIWAMEPYESPLLSQGKSGSHKIQGIGANFIPKVLDVDLLDEVITVKSDDAID MARRLSKEEGLLVGISSGANVVAALKMQEKLGGNIVTVLPDTGERYLSTELFND >gi|281297133|gb|ADDO01000060.1| GENE 20 20137 - 20673 484 178 aa, chain + ## HITS:1 COG:CAC0687 KEGG:ns NR:ns ## COG: CAC0687 COG1045 # Protein_GI_number: 15893975 # Func_class: E Amino acid transport and metabolism # Function: Serine acetyltransferase # Organism: Clostridium acetobutylicum # 5 172 2 168 186 190 58.0 1e-48 MIKYFKALKEYGEFILDQDPACQSLFEAVFLYPIVRAMIYHRIAHHFYNKNHKILARWIS QISRRRTGIEIHPGAKIGKNLFIDHGMAVVIGETAEVGDYCHFYHNITLGGTGNEKDHKR HPTVGNYVTIGTGATILGPVKVGDFAKIGAGALVLSDVPKGATAVGLPAKVVKIKEID >gi|281297133|gb|ADDO01000060.1| GENE 21 20756 - 20875 61 39 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MYIKKIQKNKKLTPKIQILTEFGVNFIFYIVILSRIFLK >gi|281297133|gb|ADDO01000060.1| GENE 22 20839 - 22011 1192 390 aa, chain - ## HITS:1 COG:CAC1651 KEGG:ns NR:ns ## COG: CAC1651 COG1160 # Protein_GI_number: 15894928 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Clostridium acetobutylicum # 5 387 9 393 411 282 43.0 9e-76 MEVSKGNRIHIGIFGKVNSGKSSLINLLAAREVSIVSDREGTTTDSVYKSMEFLELGPVT IMDTPGVCDKSFLGKLREQRLERDIEKADIAIILFSDSDIGRELELIKKLKKSKILLVIN KVDILSAQEKENIYKNLKDLPFKIIEISTKEKNGIEELKKELVKLKPEEAPLIFDGLVKK GDRVLLIMPQDIAAPKKRLILPQVESIRELLDREALLYIAKVENMEDMLSSLKEAPDLIV TDSQVFQDVYKLKPEKSKLTSFSVLFAKMKGDIDTYIKGTEVFSKIDENSKILIAECCTH APLSEDIGRVKIPNMLKKKYGENLQVDFQSGASLPKDIEKYDLIIQCGGCMLTRNNILNR IEKAKVLNVPITNYGLTIAYFKKILDKITI >gi|281297133|gb|ADDO01000060.1| GENE 23 22011 - 23426 1489 471 aa, chain - ## HITS:1 COG:CAC1356 KEGG:ns NR:ns ## COG: CAC1356 COG1060 # Protein_GI_number: 15894635 # Func_class: H Coenzyme transport and metabolism; R General function prediction only # Function: Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes # Organism: Clostridium acetobutylicum # 1 471 1 472 472 654 68.0 0 MYNKYSSDPNEFINHEEILDTLDFAQKNKNNKLMLEEILNKASLEKGLSHREAAVLLLSD EKWVRDGIFSLAKKIKENYYGNRIVLFAPLYLSNYCVNHCVYCPYHAKNKNIVRIKLTQE QIKNEVIALQDLGHKRLALELGEDPVNNPIDYVLESIDTIYSIKHKNGSIRRVNVNIAAT TVENYKKLHDRGIGTYILFQETYNKKSYEKLHPYGPKHDYDYHTTAMDRAQEGGIDDVGI GVLFGLETYKYELVGLLMHAEHLEATFGVGPHTISVPRIQPADDIDPKSFKNALADDIFE KIIGLIRLSVPYTGMIISTRESKIVREKALALGISQISGGSRTTVGGYANGKDVNSAQFE LADNRTLEEVVDWLIELGYIPSFCTACYRAGRTGDRFMALCKSKQILNCCQPNALMTLKE YLLDYGSDFSKGLGEKLIDHELKKIPRDSVRERAKTMIAQMAYEGKRDFRF >gi|281297133|gb|ADDO01000060.1| GENE 24 23464 - 24492 852 342 aa, chain - ## HITS:1 COG:TM1269 KEGG:ns NR:ns ## COG: TM1269 COG0502 # Protein_GI_number: 15644025 # Func_class: H Coenzyme transport and metabolism # Function: Biotin synthase and related enzymes # Organism: Thermotoga maritima # 32 311 34 310 348 245 44.0 1e-64 MNVEDICNKFYLTKKLSFEEFKFLYCLDDFSSLNAFARKLALKNFSNKIYIRGLIEISTI CKNNCYYCGLRSDNKNTQRIRLKKEDILKRAEAGYKMGIRTLVMQGGEDPFYTKDYMVDI IKSLKNIYPDIAITLSLGERPFEDFKAFKEAGADRYLLRHETYDRDHYQALHPREMSFDN RIECLYNLKSLGFQTGCGMMIGSPYQKIENVYKDLELILKLKPQMVGLGPFIAQKDSPFN NYENGKLSYVLKILSIVRIADEKVLLPATTALGTIHKMGRELGILAGANVLMPNIGSEKL RQSYKLYDNKIGTKLENEDDFFSLSSKVGAIGYELSMSRGDY >gi|281297133|gb|ADDO01000060.1| GENE 25 24492 - 24728 366 78 aa, chain - ## HITS:1 COG:no KEGG:EUBREC_0233 NR:ns ## KEGG: EUBREC_0233 # Name: not_defined # Def: hypothetical protein # Organism: E.rectale # Pathway: not_defined # 2 76 3 77 81 94 62.0 2e-18 MTRIAVIAIIVTNPDSVEKLNEELHEFRQFIIGRLGVPYREKYLNIISVALDAPMDTINA LNGKIGALPGVSSKTIIQ >gi|281297133|gb|ADDO01000060.1| GENE 26 24861 - 25496 441 211 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282883014|ref|ZP_06291616.1| ## NR: gi|282883014|ref|ZP_06291616.1| putative lipoprotein [Peptoniphilus lacrimalis 315-B] putative lipoprotein [Peptoniphilus lacrimalis 315-B] # 1 211 1 211 211 337 100.0 4e-91 MKKLLLIPLILILGACSLSSTKSYNNIDQVYRVKPVRVSFENLKNTTKSKDKNFKFKVTY RDLRLFENHLGIDLFKNPAQIYVSYIEFFGGPISQVNIYSVEQNYFNDKEHDLLVKITFS TSSSIKNLPKDSLKEYEYYDSYQFENSPKLLIYVKSDHINRVVKAKGIYKINNMVYELSS DNTYDIIHIFQLLENYNMKSLLNEKMADYNN Prediction of potential genes in microbial genomes Time: Mon Jul 18 12:51:43 2011 Seq name: gi|281297079|gb|ADDO01000061.1| Peptoniphilus lacrimalis 315-B contig00003, whole genome shotgun sequence Length of sequence - 63124 bp Number of predicted genes - 57, with homology - 53 Number of transcription units - 25, operones - 13 average op.length - 3.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 46 - 309 174 ## COG3666 Transposase and inactivated derivatives - Prom 392 - 451 6.9 + Prom 223 - 282 7.1 2 2 Tu 1 . + CDS 344 - 505 141 ## 3 3 Tu 1 . - CDS 483 - 1706 1213 ## COG3177 Uncharacterized conserved protein - Prom 1727 - 1786 13.7 4 4 Op 1 . - CDS 1846 - 1995 74 ## 5 4 Op 2 . - CDS 1982 - 2098 71 ## 6 4 Op 3 . - CDS 2064 - 3188 996 ## gi|282883071|ref|ZP_06291672.1| hypothetical protein HMPREF0628_0006 + Prom 3233 - 3292 10.2 7 5 Tu 1 . + CDS 3424 - 3558 62 ## + Prom 3565 - 3624 9.0 8 6 Tu 1 . + CDS 3682 - 4275 722 ## COG3291 FOG: PKD repeat + Term 4302 - 4335 3.1 - Term 4384 - 4427 3.0 9 7 Tu 1 . - CDS 4475 - 4978 672 ## COG4720 Predicted membrane protein - Prom 5169 - 5228 11.0 - Term 5294 - 5332 6.5 10 8 Op 1 6/0.000 - CDS 5340 - 6704 1403 ## COG1066 Predicted ATP-dependent serine protease 11 8 Op 2 5/0.000 - CDS 6673 - 9147 2183 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 12 8 Op 3 7/0.000 - CDS 9147 - 10133 269 ## PROTEIN SUPPORTED gi|163764772|ref|ZP_02171826.1| ribosomal protein L5 13 8 Op 4 5/0.000 - CDS 10118 - 10624 234 ## PROTEIN SUPPORTED gi|163764773|ref|ZP_02171827.1| ribosomal protein L24 14 8 Op 5 . - CDS 10637 - 11089 267 ## PROTEIN SUPPORTED gi|163764774|ref|ZP_02171828.1| ribosomal protein L14 - Prom 11156 - 11215 11.8 - Term 11297 - 11329 4.0 15 9 Op 1 11/0.000 - CDS 11345 - 14368 2830 ## COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases 16 9 Op 2 4/0.000 - CDS 14380 - 15084 311 ## COG0732 Restriction endonuclease S subunits 17 9 Op 3 1/0.000 - CDS 15023 - 16261 982 ## COG0732 Restriction endonuclease S subunits 18 9 Op 4 . - CDS 16254 - 16631 476 ## COG3943 Virulence protein 19 9 Op 5 2/0.000 - CDS 16592 - 17266 670 ## COG3943 Virulence protein 20 9 Op 6 . - CDS 17259 - 18101 730 ## COG0286 Type I restriction-modification system methyltransferase subunit - Term 18165 - 18197 2.0 21 10 Op 1 . - CDS 18202 - 19695 1211 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs 22 10 Op 2 . - CDS 19688 - 20368 650 ## SPAP_0911 site-specific recombinase - Prom 20452 - 20511 2.2 23 11 Op 1 . - CDS 20515 - 21357 772 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs 24 11 Op 2 . - CDS 21357 - 21935 433 ## MGAS10750_Spy1717 site-specific recombinase 25 11 Op 3 . - CDS 21950 - 23026 610 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs 26 12 Tu 1 . - CDS 23127 - 23282 201 ## SPAP_0909 hypothetical protein - Term 23750 - 23808 16.1 27 13 Tu 1 . - CDS 23823 - 24233 516 ## SPAP_0908 hypothetical protein - Prom 24339 - 24398 6.0 - Term 24325 - 24364 5.3 28 14 Op 1 . - CDS 24503 - 24655 160 ## SPAP_0907 hypothetical protein 29 14 Op 2 . - CDS 24722 - 25054 371 ## MGAS10750_Spy1715 hypothetical protein - Prom 25121 - 25180 7.7 + Prom 25080 - 25139 6.8 30 15 Op 1 . + CDS 25213 - 25614 728 ## MGAS10750_Spy1714 transcriptional regulator, Cro/CI family 31 15 Op 2 . + CDS 25623 - 26171 682 ## COG2856 Predicted Zn peptidase 32 15 Op 3 . + CDS 26180 - 26662 320 ## SPAP_0904 hypothetical protein 33 15 Op 4 . + CDS 26655 - 27737 1118 ## COG3943 Virulence protein + Prom 27824 - 27883 7.3 34 16 Op 1 . + CDS 27908 - 28264 326 ## MGAS10750_Spy1711 hypothetical protein 35 16 Op 2 . + CDS 28266 - 29597 1173 ## FMG_0943 hypothetical protein - Term 29479 - 29515 2.1 36 17 Tu 1 . - CDS 29626 - 30177 463 ## CLM_2298 DEAD/DEAH box helicase domain-containing protein - Prom 30297 - 30356 4.0 37 18 Op 1 . - CDS 30382 - 32202 1388 ## COG1204 Superfamily II helicase 38 18 Op 2 . - CDS 32199 - 33113 665 ## CLM_2299 hypothetical protein - Prom 33136 - 33195 1.8 39 19 Tu 1 . - CDS 33217 - 33423 252 ## COG3655 Predicted transcriptional regulator - Prom 33470 - 33529 10.5 - Term 33534 - 33563 2.1 40 20 Op 1 . - CDS 33569 - 34225 919 ## MGAS10750_Spy1699 hypothetical protein - Term 34237 - 34267 1.0 41 20 Op 2 . - CDS 34269 - 41888 7572 ## COG4646 DNA methylase - Prom 41912 - 41971 5.4 - Term 41904 - 41945 4.0 42 21 Op 1 . - CDS 41973 - 43475 1202 ## NGO1197 hypothetical protein 43 21 Op 2 1/0.000 - CDS 43531 - 44469 678 ## COG0270 Site-specific DNA methylase 44 21 Op 3 . - CDS 44462 - 46183 1522 ## COG0550 Topoisomerase IA - Prom 46207 - 46266 4.3 - Term 46195 - 46230 5.1 45 22 Op 1 . - CDS 46276 - 47259 782 ## Apre_1821 hypothetical protein 46 22 Op 2 . - CDS 47261 - 47863 734 ## Apre_1820 hypothetical protein 47 22 Op 3 . - CDS 47937 - 48797 952 ## FMG_0957 putative bacteriocin 48 22 Op 4 . - CDS 48812 - 51163 2593 ## COG5022 Myosin heavy chain - Prom 51269 - 51328 5.8 49 23 Op 1 . - CDS 51403 - 53982 2363 ## COG0791 Cell wall-associated hydrolases (invasion-associated proteins) 50 23 Op 2 . - CDS 53990 - 56413 1784 ## COG3451 Type IV secretory pathway, VirB4 components 51 23 Op 3 . - CDS 56304 - 56714 429 ## MGAS10750_Spy1689 hypothetical protein 52 23 Op 4 . - CDS 56716 - 57006 409 ## FMG_0962 hypothetical protein 53 23 Op 5 . - CDS 57016 - 57879 985 ## Apre_1812 hypothetical protein 54 23 Op 6 . - CDS 57977 - 59623 1738 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs 55 23 Op 7 . - CDS 59627 - 59851 194 ## gi|282883038|ref|ZP_06291639.1| conserved hypothetical protein - Prom 59881 - 59940 8.5 - Term 59866 - 59908 5.0 56 24 Tu 1 . - CDS 60005 - 60748 654 ## HMPREF0837_11437 phage-associated protein - Prom 60770 - 60829 5.5 57 25 Tu 1 . - CDS 61139 - 63058 1320 ## COG0480 Translation elongation factors (GTPases) Predicted protein(s) >gi|281297079|gb|ADDO01000061.1| GENE 1 46 - 309 174 87 aa, chain - ## HITS:1 COG:CAC0657 KEGG:ns NR:ns ## COG: CAC0657 COG3666 # Protein_GI_number: 15893945 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Clostridium acetobutylicum # 12 87 10 85 334 62 44.0 3e-10 MKRTKNTSSFTNYTLVNDTIQLRLNFNTEIYIKDDVKLRLVKNIIERMNLSELKKVYSSF GRKPTVNPVTMLQIIIFCYSEGIFSSR >gi|281297079|gb|ADDO01000061.1| GENE 2 344 - 505 141 53 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFSRLFSMMGLLQQHLMNKYEFSLVIINYILTLYILTYKNRTKRTKFKKNNYY >gi|281297079|gb|ADDO01000061.1| GENE 3 483 - 1706 1213 407 aa, chain - ## HITS:1 COG:FN0017 KEGG:ns NR:ns ## COG: FN0017 COG3177 # Protein_GI_number: 19703369 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Fusobacterium nucleatum # 4 403 8 409 415 159 34.0 8e-39 MDYLFKIHYKDRTNYNKIYNSRLNFETTLRTNLVIRPYKTNEQYQLYYMYNNDTATFIDR IRNNDNILNNLKDSLPGIAKNAFLVDIISSELISSNNLEGVETNKEEIADTTRNMLNKNK PKSKRLSSMINSYILLIDDIKLKAPQDCKDVRKIYDEITKDEIDASDKIDGKYFRKDRVY VQKKGTVSNEIIHRGILGEDNIESSVLNLLSLLDDKNISTLLKVAIAHYYFGYIHPFYDG NGRVGRFISSLYIRQEYNYLTAMSLSRGCLLKNNDYYKAFRITNSSINKGEMNYFIDEFL SILLKGQEDIIDNLTDKLDKLNYSKKFIEEDGNINSELKKGLMFMLSQSYYFDNNSGIER NTLIEYEEKENPVKRIKDELNELEAIGIIKVMKKRPLIYAVNNNYFS >gi|281297079|gb|ADDO01000061.1| GENE 4 1846 - 1995 74 49 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MEMYKIDSRTRLVFQLRYIEGRSWVYISRQLGSSNESYARMIHNRYLNY >gi|281297079|gb|ADDO01000061.1| GENE 5 1982 - 2098 71 38 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MALLKEKKTKTNKGSMYIGSIINSVGEKSSALFLYGNV >gi|281297079|gb|ADDO01000061.1| GENE 6 2064 - 3188 996 374 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282883071|ref|ZP_06291672.1| ## NR: gi|282883071|ref|ZP_06291672.1| hypothetical protein HMPREF0628_0006 [Peptoniphilus lacrimalis 315-B] hypothetical protein HMPREF0628_0006 [Peptoniphilus lacrimalis 315-B] # 1 374 1 374 374 588 100.0 1e-166 MNYFENLLEMQKNMMEEQRKAYENLAKNFNFNFNGMDFFKNFNDFNFYQNPEDFFKEYLR MQDYFSKYYKEAFNKFPGFDKAMETYKANLNILDKIFKAYGDLFTNGDLSKAGDNLIDLY RIFNDQLVELSKNNVEKYLPINFFEIMANFPVDTFINPFINSTKKSMEFYQKALDKEPKF MTDQIEKFYKSILDKLDEVPSVGISQEEKKRNRQLFENYLSLSLKIFDFNLYLSKASRQA AIDAQNSYFDRLEEERGLENFSDFYKFYIDNLCDAYKNLVDSPIYKKKAKAILDLVNNNK EMFDNYIEEGLGAFPIVTQNKLKEYLDKLEDMTSILMDIQNEKSDSKKGIHITKSQLSKD KKSHGASEGKEDQD >gi|281297079|gb|ADDO01000061.1| GENE 7 3424 - 3558 62 44 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNINILFICYYTLYISGYSINIIKKITLNIFIINISGHLLLLEN >gi|281297079|gb|ADDO01000061.1| GENE 8 3682 - 4275 722 197 aa, chain + ## HITS:1 COG:MA4289 KEGG:ns NR:ns ## COG: MA4289 COG3291 # Protein_GI_number: 20093078 # Func_class: R General function prediction only # Function: FOG: PKD repeat # Organism: Methanosarcina acetivorans str.C2A # 63 197 634 773 1734 67 34.0 2e-11 MDKNFTFDDFIFKGDELKGMTRAGKDKVKAQGIKEIIIPTESPDGVPVRVIGEQCFYRRK FESIVIPETVEVIKYDAFGVNALTEVIIPDSVKEIYGFAFYRNKITDIKLPKNLVYIGPS AFALNQIGEINLPDTVEVIETSAFYKNNLTSIKIPKNIKKIDMFAFNKNGIMEVEVPNSI ETLHENAFDFTTNVKRI >gi|281297079|gb|ADDO01000061.1| GENE 9 4475 - 4978 672 167 aa, chain - ## HITS:1 COG:PH1832 KEGG:ns NR:ns ## COG: PH1832 COG4720 # Protein_GI_number: 14591582 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Pyrococcus horikoshii # 7 164 42 199 202 82 40.0 3e-16 MKNISTKKLTIIAMFIALTTVATMAIQIPIPATKGYVNVGDTIVIACALLMGRTAGGIVG GIGSALADLISGYGYYAPITLVVKGLEGYIAGLLKEKTSLSFIICGLAGGIVMAIGYLLA EGLILYNFPTAIASFMPNLLQGIGGAVLADIVYPILKKAIFNQLDFN >gi|281297079|gb|ADDO01000061.1| GENE 10 5340 - 6704 1403 454 aa, chain - ## HITS:1 COG:SA0484 KEGG:ns NR:ns ## COG: SA0484 COG1066 # Protein_GI_number: 15926203 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted ATP-dependent serine protease # Organism: Staphylococcus aureus N315 # 2 423 3 422 454 307 39.0 3e-83 MKKKIAYKCSNCGYISQGYFGKCPHCNKWNTLEEFDENNNSEKSHSQNKDAVILKNVDSK ESSRVMTDIMEFNRVMGGGIVRDSVSILTAKPGAGKSTLLLQVANDLAKKGFVVLYASGE ESQSQIKRRATRILDKLSENIWVSSTTFLDDVLEQTKTVDPDFIIIDSIQTFVLKEFNSR PGTPTQTMECAYKMVEIAKNSKRPRFVFMVGQMTKDDELAGVRSLEHLVDTVLVIEGESS EELRSLMATKNRYGSTGEMGFFTMTESGIKSLDNPSLYFCTLRQEDNSPPGSSLSVIREG TRPIILETEALTSKSFMPYPSRVGECIKREHLNTLISILEERANIRLMDKNVVIKTSGNI KLRDSASNLSIMMSIVSSNLNKPIINNKVFIADVGLTGELKNIPSLELRIKEAERMGFKE AYIADIKSINEDKFKGIKLIKIGHISQVIEKIFS >gi|281297079|gb|ADDO01000061.1| GENE 11 6673 - 9147 2183 824 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 3 796 2 804 815 845 52 0.0 MSMFGRFSEKAQKAILFAQAEARDERHSYIGSEHILLGIIKEGTDAGAQILDKLGIDYQK AKKATLDIVATGQGPTVASVSYTPRTKRIFELSFDVAKELGNRYVGTEHLLLGILREGQG VAILVLKRLGIDIINLENDILNNLDEYEEENEENPSQESLNKFTIDLSKKAQEGKIDPII GREKEIKRVIQVLSRRTKNNPVLIGEPGVGKTAIAEGLALKIFKGDVPQIMADKKIMTLD VSALIAGSKYRGDFEERLKNVVKEAENNKNIILFIDEMHVIIGAGAAEGAMDASNILKPM LTRGVIQIIGATTISEYRKHIEKDPAFERRLMPITVEEPNVEDSIKILMGIKDKYEDHHN VTIGEDAVSAAVKLSDRYLNDRFLPDKAIDLIDEAASKLKIESYKTPDFEKKYKEELKKV EDDKNMAVRNQDFELAASLRDKEKVIEREYKEALEDFKKEESKKRVEVDLIANIVSEWSK VPVTNLTEKETERLKTLDEDLKKKVKGQDQAIDVLARAVKRARIGLKTPNKPIGSFIFVG PTGVGKTFLTKTLAEELFGSPENMIRIDMSEYMEKYTVSRLVGSPPGYVGYDEGGQLTEA VRTKPYSVILFDEIEKAHPDVFNILLQILDEGRLTDAQGRTVNFKDTVIVMTSNVGANSL VKNNTLGFSLNKEEEKKNEYQKMKDIISRELKNTFRPEFLNRIDETVVFKELSKKEIKNI VGLQLEDLNLRLETMGIKATFTDKLINHIVEKGYDKKYGARPLQRTIRNLLEDEIADRYL DGKIKEGSLINIDFKNKLIIENVEELEDLKKDKKDEKENSIQVQ >gi|281297079|gb|ADDO01000061.1| GENE 12 9147 - 10133 269 328 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764772|ref|ZP_02171826.1| ribosomal protein L5 [Bacillus selenitireducens MLS10] # 1 317 18 343 365 108 25 1e-22 EGEAMTVLLKSSVKLLRNLQGINFMPKLNDVDALDVIKILEPKILDLAYEKKDVLKFQAL EKLQYIERGILKAPFMESNISSYYVRKDSPDILLNESNHLVIRKSSRDEKIEHMFDEVLE IEESLDKDVAFAFDSEFGYLTTRPINAGTGLLINYKLHLPALNFYGIENVSRSLLRLGYS LDSYKDKSGKSLGNIFNLFFESTIGYSEETYIKKMKTIVKEIIVMEKEAEKKLYLDSIIT LEDMVNRSLGILRNARILSEDEMLNCMSNIDLGLNLSILKAKRDFDFYDEANKLKNGYLQ NERGSILDLKSRDILRANKSRALIREVF >gi|281297079|gb|ADDO01000061.1| GENE 13 10118 - 10624 234 168 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764773|ref|ZP_02171827.1| ribosomal protein L24 [Bacillus selenitireducens MLS10] # 1 167 1 172 179 94 30 1e-18 MICDNCKKRESVISYTMIHDNKIEEIHLCQVCAEQKMKLDLTNSQSFLPQIEDFLKNIFA FTSDDSNSEEASLICPQCGTSLSDFKNTGKVGCSNCYSIFKNELKNYLHTVNPKPVHVGK IPKNADTNIVMARDLRELQDKLQSAVSLEEYEEAAHIRDEIKALKEKL >gi|281297079|gb|ADDO01000061.1| GENE 14 10637 - 11089 267 150 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764774|ref|ZP_02171828.1| ribosomal protein L14 [Bacillus selenitireducens MLS10] # 1 148 1 150 158 107 40 2e-22 MAKLSNSIEEFLNELIEEANGALEIQRSKISDHFNCAPSQINYVLTTRFTPYKGYYVESR RGGGGFIRIVKVEFQDHEKSLDLFRDFIGDSITKDKADLLIKELRRRDFISSREAELIRV SLSDRSLSLSDNRNILRANILKNILLVIFS >gi|281297079|gb|ADDO01000061.1| GENE 15 11345 - 14368 2830 1007 aa, chain - ## HITS:1 COG:HI0218 KEGG:ns NR:ns ## COG: HI0218 COG0610 # Protein_GI_number: 16273673 # Func_class: V Defense mechanisms # Function: Type I site-specific restriction-modification system, R (restriction) subunit and related helicases # Organism: Haemophilus influenzae # 10 1007 4 1022 1026 1077 58.0 0 MAENEAGYGFSTIAEMNNGIILANYKKIDRASESTYQSEADLERDLINNLMTQGYQRLEA GNSSDLYKNLKEQIERLNGVNFSSSEWQRFLLEYLDAPNDGIIEKTRKIQENYIYDFTFD DGNLKNIKLIDKDNIFNNFLQVTSQIKQEGSHKNRYDVSILVNGLPLVHIELKKRGVSLH EAFDQIHRYSKESFNVENSLYKYVQIFVISNGTYCRYFANTTAQNKNNYEFTCQWADAKN KSINDLEDFTRTFFEKRVILEVLTKYCVFDVSNTLLIMRPYQIAATERILWKIKSSYERK KAGTIEAGGFIWHTTGSGKTLTSFKTARLATGLSFIDKVFFVVDRKDLDYQTMKEYQRFQ PDSVNGSKDTKALKKAIEKKDDRIIVTTIQKLNEFVKKNPNHEIYDKNCVLIYDECHRSQ FGDAQKNIRRSFKNYYQFGFTGTPIFPENSLGTDTTAGIFGAQLHSYVITDAIRDGKVLK FKVDYNNITPKFKAAEREYDEKKLVKLESKMFLHPERITEITKYILRIFDTKTHRNEFYD IKNRRLRGFNAMFAVQSVDAAKLYYEEFQRQQSALDFDKRLRVATIFSYAPNEEGKAIGE ISEENFDPCAMDSTAKEFLDKVINDYNNYFKTNFSTAANEFQNYYKDLSLRVKNKEVDLL IVVGMFLTGFDAPTLNTLFVDKNLRYHGLIQAFSRTNRILNKVKTFGNIVCFRDLEKATK DAIKTFGDENSLNIILEKSYKEYIDGFIDEETGKTTKGYKDLCNEILEKFPDPTEIELEA DKKDFVQLFGELLKSENILKNFDEFSSFEKIIPDRLMQDMKSVYVDIREDILKLRHGDKE NTMTIDFSDVEFQIDLLKTDEINLDYILNLILEKSKEHTDIETLKVEVRRVIRSSLGTRA KEDLIMNFINSNKLTDLKNTDDILESFYSFAKKEKEKNINNLIDRENLKEGSKRFIEKAI EKGYASYSGDELDKIIPPTSRRGGAREKKKESILDKIRNLVEIFTGI >gi|281297079|gb|ADDO01000061.1| GENE 16 14380 - 15084 311 234 aa, chain - ## HITS:1 COG:all2687 KEGG:ns NR:ns ## COG: all2687 COG0732 # Protein_GI_number: 17230179 # Func_class: V Defense mechanisms # Function: Restriction endonuclease S subunits # Organism: Nostoc sp. PCC 7120 # 37 218 21 203 427 79 32.0 5e-15 MTRCVTAFRIPHSAFRNLIPKCYFDILKEACDIVNLNSFRIRKEKLDAICDVRDGTHNSP KRQLHGKYLVTSKNVKNGEVNFDNSYYISEQDYLEINKRSKVDIYDLLFTMIGTIGEVAQ ITEEANYAIKNVGLIKTNNKILSRYLFYYLKSEKIRNYISENKSKGSQVFISLGKLRNME IILPCQEVQEYIVSILDKFEKLVNDVNEGLPKEIDLRQKEYEYYREKLLDFPKN >gi|281297079|gb|ADDO01000061.1| GENE 17 15023 - 16261 982 412 aa, chain - ## HITS:1 COG:SP0508 KEGG:ns NR:ns ## COG: SP0508 COG0732 # Protein_GI_number: 15900422 # Func_class: V Defense mechanisms # Function: Restriction endonuclease S subunits # Organism: Streptococcus pneumoniae TIGR4 # 200 367 91 255 522 144 43.0 3e-34 MSKIDELLKNEKVEWKKLGEVCEFQRGNTITKKDIIEGVIPVIAGGQKPAYYHGISNREG VTIAVAGSGAYAGFVSYWEEPIFLSDAFSIEPNKNLNKRYLYHWLLSNQHKIFELKQGSG IPHVYGKDLGRFEIPIPSLETQEKIVETLDKFTNYVTELQAELQARNKQYEYYRDMLLSE EYLNKISMKMDALTNKDYELKMTTLGEIAQINRGASPRPIKKYITEDIKGIPWIKIGDVG VNSKYVTKTAQKITLEGAKKSRILKKGDFIMSNSMSYGRPYILGIDGAIHDGWASISGFY NTLDSDFLYYYLTSSKVQNYWKGKINSSSVDNLNSEIICSLPIPVIDKELQQVVAKVLDK FQSLLDDTEGLLPEEIEKRQKQYEYYREKLLTFDKMCDSIPHSAFRIPQFNS >gi|281297079|gb|ADDO01000061.1| GENE 18 16254 - 16631 476 125 aa, chain - ## HITS:1 COG:NMA1039 KEGG:ns NR:ns ## COG: NMA1039 COG3943 # Protein_GI_number: 15793995 # Func_class: R General function prediction only # Function: Virulence protein # Organism: Neisseria meningitidis Z2491 # 1 118 207 324 336 104 47.0 4e-23 MGLTNFKGDLPTLREAEIAKNYLTEKELKSLYALVSGYLDFAQRQAEKEIPMTMKDWINH VDRILQATGENLLEGNGKISHGQMEEKVKDEFKKYRQKNLSQVEKDYIEEIKSIEKKAKN GDKSE >gi|281297079|gb|ADDO01000061.1| GENE 19 16592 - 17266 670 224 aa, chain - ## HITS:1 COG:NMA1039 KEGG:ns NR:ns ## COG: NMA1039 COG3943 # Protein_GI_number: 15793995 # Func_class: R General function prediction only # Function: Virulence protein # Organism: Neisseria meningitidis Z2491 # 12 220 3 214 336 211 50.0 6e-55 MSKEIDKTKGEILIYKTDDGNTKIDVIMVDGTVWLSQAQLCELYQSSKSNISEHIKNIFI DGELQADSVVRKFRTTAKDGKNYNVLHYNLDMIISLGYKVKSKVGTKFRIWATQRLKEYL VKGFTMDDERLKNLGGGTYWKELLDRIRDIRSSEKVFYRQVLDLFATSIDYDKKSEDAKY FFTTIKNKMHYAIHKNTASELIYKRVSSEKNLWVLQISRGTCLL >gi|281297079|gb|ADDO01000061.1| GENE 20 17259 - 18101 730 280 aa, chain - ## HITS:1 COG:NMB0829 KEGG:ns NR:ns ## COG: NMB0829 COG0286 # Protein_GI_number: 15676726 # Func_class: V Defense mechanisms # Function: Type I restriction-modification system methyltransferase subunit # Organism: Neisseria meningitidis MC58 # 2 278 237 513 514 351 63.0 1e-96 MKKQFDDHIIEEGFFGQEINMTNFNLCRMNMFLHNVNYNNFSIKRGDTLLAPLHNDEKPF DAIVSNPPYSIKWVGDNDPTLINDIRFAPAGKLAPKNYADFAFILHALSYLSSKGRAAIV CFPGIFYRKGAEKTIRKYLVDNSFVDAVIQLPENLFFGTSIATCVLVMAKNKTENKVLFI DASNEFKKVTNNNILEEENINKIVDEFRDRKEIEYFSRYVSRDEIAENDYNLSVSTYVEK EDTREKIDIKVLNKEIEETVEKINKLRASINQIVRELEDE >gi|281297079|gb|ADDO01000061.1| GENE 21 18202 - 19695 1211 497 aa, chain - ## HITS:1 COG:lin1623 KEGG:ns NR:ns ## COG: lin1623 COG1961 # Protein_GI_number: 16800691 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Listeria innocua # 5 309 10 301 301 173 36.0 8e-43 MSKIALYIRLSVEDMIKTDESESIINQRAYLNDYLDKNEEFKNFTREEYVDDGYSGTNEN RPAFQRMLEDVKKNNIQMIIVKDLSRFMRDYITLGDYLENIFPFLGVRFIAINDGYDSNK EKGNGTDLDIQFKGLLYDFYTKDISEKVKSSMTTLKKQGKFLAWSPPLGYMKDPNDKHKI IVDKETAWIVKKIFKLALDGVSSRNIAKILNEEKIPTPSKRKSELTNLDFEYSIIRTAKK PRPTWTNGNVIDVLANENYTGTYTFNMQDKSVLNPSSFKFKPKEEWGRVENNHEAIISKE DFEKVQKIKEKNLFMKGKNTDYEWRKKSPLQGFAKCPTCNHILGCIQSKHKRPDGSLRVH TYFTCRICKCNNVKHKNSRAGSLEEQVFEAIKEKYGLDDPIKDEKVKVKPMEKSIEDLEA KKMQNFEKYKLGKMNRQKFIDSKNLIDEEIQAIKEKIQKAKEEKEVIDNTKLTRELMEKY IDSVFCEGNEVLNIIWK >gi|281297079|gb|ADDO01000061.1| GENE 22 19688 - 20368 650 226 aa, chain - ## HITS:1 COG:no KEGG:SPAP_0911 NR:ns ## KEGG: SPAP_0911 # Name: not_defined # Def: site-specific recombinase # Organism: S.pneumoniae_AP200 # Pathway: not_defined # 1 226 331 556 556 385 97.0 1e-106 MHNFENRDYENRFKGLVINNNTGKELNRRTRIYGKNKDRLYYSFQNERFSGSIKPEKSVF IMERDLDQAISDKISEFIMKTTSKTKFVNRIKAIFNNAIDTFKKDIENLKRKNLHEENII QRAYEEYSLGKIDRDEYLLRREIAQSHMATFDNEISAIEVNISKLKKERSKSTKWINDLY ASKNLEKLPGDLIHSLIEKIIVYDKHEFEIVFKFNIDNLVGGTDDE >gi|281297079|gb|ADDO01000061.1| GENE 23 20515 - 21357 772 280 aa, chain - ## HITS:1 COG:lin1623 KEGG:ns NR:ns ## COG: lin1623 COG1961 # Protein_GI_number: 16800691 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Listeria innocua # 24 273 10 256 301 122 32.0 6e-28 MARTSKRYIEKKNEKTERKVFKAGIYTRLSNERTEEWREKSYSIETQILSCKEYALKENI DVLEVYTDYEYSGTNFERPSFQNMMQDIRDRRINCIIIRDLSRLGREYLEMGRLIDKVFP FLGVRFISVNDKLDTVKETDSKKSFEVTLKNIINDMYAKDISVKIKTSKHNRARNGYFIG SVPPYGYKIKKSKEGQQLVIDENVRFIVEEMFDLTLQGKSQYEVAKHFNEKGYAPGMVYY KTGRIYREDDDPEWNKGTISKMLTNPAYTGTLVQGVSNKI >gi|281297079|gb|ADDO01000061.1| GENE 24 21357 - 21935 433 192 aa, chain - ## HITS:1 COG:no KEGG:MGAS10750_Spy1717 NR:ns ## KEGG: MGAS10750_Spy1717 # Name: not_defined # Def: site-specific recombinase # Organism: S.pyogenes_MGAS10750 # Pathway: not_defined # 1 192 366 557 557 318 98.0 8e-86 MDMTLFALKDYLKKYNELLSQVNKLDVSKVTFNIDFESLNSEKRKYERLRQSLYMDLEDE LITSEEFERFRKNYLIKIREIEKQIATKKNILANLQEKMKKKDSLVSEIVPTDLSSLNRL TIVSFIDRIEIGENNEINYVFNNLETVNLLKTLIKEESESKSEVKKNLISINKVFGNALE NKTPMQLVGGVL >gi|281297079|gb|ADDO01000061.1| GENE 25 21950 - 23026 610 358 aa, chain - ## HITS:1 COG:lin1623 KEGG:ns NR:ns ## COG: lin1623 COG1961 # Protein_GI_number: 16800691 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Listeria innocua # 2 300 6 300 301 186 33.0 6e-47 MEKFACMYLRLSREDGDSTESNSISNQRQIIKSYARDNDFKVVAEYVDDGFSGSNFDRPK FKKMIQDLEEKKFKTIIVKDLSRFGRDYIESGKYLQKIFPEKGIRFISVNDNYDSENADV SDTHLILPIRNFINDSYCRDISMKVKSSKEIKRKNGEFIGAFAPFGYKKDSKNKHKLVVD TEVSHIIERIFNMKIDGYSSKAIADFLNSIGCVTPSKHKENSGDNHTTGFIVKDSKWDAK MVNRIITNKVYIGVLEQGKTRKLNYKSKREVEVNEEDWIVINDSHKPIISKSIYALANKM MLRDVKQSADIPHILSGMLYCKDCGSSMVRRKVKSKNGYNIFYIVLTIITKEIAQDIV >gi|281297079|gb|ADDO01000061.1| GENE 26 23127 - 23282 201 51 aa, chain - ## HITS:1 COG:no KEGG:SPAP_0909 NR:ns ## KEGG: SPAP_0909 # Name: not_defined # Def: hypothetical protein # Organism: S.pneumoniae_AP200 # Pathway: not_defined # 1 51 23 73 73 63 98.0 2e-09 MNTKEKKKYKPKEQISKEDYSKKITYTQSDKESLDLLDIVELYLCRACIRL >gi|281297079|gb|ADDO01000061.1| GENE 27 23823 - 24233 516 136 aa, chain - ## HITS:1 COG:no KEGG:SPAP_0908 NR:ns ## KEGG: SPAP_0908 # Name: not_defined # Def: hypothetical protein # Organism: S.pneumoniae_AP200 # Pathway: not_defined # 1 136 1 136 136 209 97.0 2e-53 MDKEYYLFVEGKKVVVSKEVYLAYHSELNKEKYQTRRDRLNKCFFFCSYDHDGNFEENLE DLEFDVEKIIETKEMIEEVRRAISKLNPAERDLIESLFYKEETIREVAAKLNISHPAVIK RRNKVLEKLKEMLEDF >gi|281297079|gb|ADDO01000061.1| GENE 28 24503 - 24655 160 50 aa, chain - ## HITS:1 COG:no KEGG:SPAP_0907 NR:ns ## KEGG: SPAP_0907 # Name: not_defined # Def: hypothetical protein # Organism: S.pneumoniae_AP200 # Pathway: not_defined # 1 50 137 186 186 93 100.0 2e-18 MRSVSLERTVYYQRKKEAIALVGVIIWGYTLPTAISQLEDGRSIEEIMNI >gi|281297079|gb|ADDO01000061.1| GENE 29 24722 - 25054 371 110 aa, chain - ## HITS:1 COG:no KEGG:MGAS10750_Spy1715 NR:ns ## KEGG: MGAS10750_Spy1715 # Name: not_defined # Def: hypothetical protein # Organism: S.pyogenes_MGAS10750 # Pathway: not_defined # 1 110 4 113 186 193 97.0 2e-48 MRISKTLKNIMNMYADSNLKFEEISSAAKLILSLYRQVTWAVDSRANFMMFESKENYGST SESAYLYLSTFAPEKVEEKFNNRVSNVMDSKLMLLIIYDACVRLKVYPEY >gi|281297079|gb|ADDO01000061.1| GENE 30 25213 - 25614 728 133 aa, chain + ## HITS:1 COG:no KEGG:MGAS10750_Spy1714 NR:ns ## KEGG: MGAS10750_Spy1714 # Name: not_defined # Def: transcriptional regulator, Cro/CI family # Organism: S.pyogenes_MGAS10750 # Pathway: not_defined # 1 133 1 133 133 216 98.0 3e-55 MAFADRLKEFREKEKLSQADFAKMIGISTRTLVHYEDGERYPRDVEVYKKIAEIMDCDYN YLLEESDEFLNRVYNMGGKRELEKARALTEGLSSLFAGGEISDEDKDAAFEAITRAYWEA KKENKKYGRKKKD >gi|281297079|gb|ADDO01000061.1| GENE 31 25623 - 26171 682 182 aa, chain + ## HITS:1 COG:lin1233 KEGG:ns NR:ns ## COG: lin1233 COG2856 # Protein_GI_number: 16800302 # Func_class: E Amino acid transport and metabolism # Function: Predicted Zn peptidase # Organism: Listeria innocua # 14 117 10 111 139 61 39.0 9e-10 MSMNRYIYDKVNRLIKKYKTRDPIELIEALNINLVYLPETKILLGMYHYIQRNRFIFISS NTNFNRKTILAHELGHDQLHRDYCMSGGAFHDQTVLNPTNKFETEANIFAAHLLISDEDV FDNINDQVCDYEIAGKLGVDINLLNLKISELAKMGKFNKPINVNTPQVDFLKNYRPEHDD YY >gi|281297079|gb|ADDO01000061.1| GENE 32 26180 - 26662 320 160 aa, chain + ## HITS:1 COG:no KEGG:SPAP_0904 NR:ns ## KEGG: SPAP_0904 # Name: not_defined # Def: hypothetical protein # Organism: S.pneumoniae_AP200 # Pathway: not_defined # 1 160 1 160 160 201 88.0 7e-51 MGIFIAGYILLILSGILFYYLISTYSVKISAFLIDFIVVGLGFYISIKDKLDNKLAIPLS IAVVIIYGILLVLINQKLPKISKLLNYIIAFIGSAVALWLALDFITNTLAAFKIIDQTYH QLPITKNMMINSFIHYLIVFLISIPVFKGRMKFIHGGNYE >gi|281297079|gb|ADDO01000061.1| GENE 33 26655 - 27737 1118 360 aa, chain + ## HITS:1 COG:STM3755 KEGG:ns NR:ns ## COG: STM3755 COG3943 # Protein_GI_number: 16767039 # Func_class: R General function prediction only # Function: Virulence protein # Organism: Salmonella typhimurium LT2 # 21 357 8 345 345 273 43.0 3e-73 MSKEMDKNKDENHDKKELQIRSSAAEYLTFIAANGDDQEAIEIRYEDENIWLTQKMMAAL YDVSTAAINQHLKKIFDDNELQEEATIKNFLIVQKEGSRNVSRETKHYNLQAIIAVGFKV NNERAVQFRKWANQIVKDFTIKGWAMDDERLKNSGTKLTKDYFEKLLVKIREIRLSERRF YQKITDIYATSLDYDPSAKATKRFFAAIQNKLHYAIHGKTAAELIVDRANHKTKNMGLTT WEGSPDSKIHKYDVVVAKNYLNEEELNQMQRIVSSYLDMAELQAERHIPMTMEDWEKRLN GFLQLWDKEILNDAGKVSAALAKKHAESEFEKYRIIQDRLYKSDFDKFLELEDDTKKLEE >gi|281297079|gb|ADDO01000061.1| GENE 34 27908 - 28264 326 118 aa, chain + ## HITS:1 COG:no KEGG:MGAS10750_Spy1711 NR:ns ## KEGG: MGAS10750_Spy1711 # Name: not_defined # Def: hypothetical protein # Organism: S.pyogenes_MGAS10750 # Pathway: not_defined # 1 118 35 152 152 183 90.0 2e-45 MANRFRNERIEIKLTKEEKEVFEKKMKLANCKTMSHFLRKCVLENEIYVVDLEPFRNLQW LLSNATNNINQIAKATNTTGVIYKNEIESMNKQIEKLSKEIWQIHSLLLNKSKASSGD >gi|281297079|gb|ADDO01000061.1| GENE 35 28266 - 29597 1173 443 aa, chain + ## HITS:1 COG:no KEGG:FMG_0943 NR:ns ## KEGG: FMG_0943 # Name: not_defined # Def: hypothetical protein # Organism: F.magna # Pathway: not_defined # 1 443 4 446 446 712 96.0 0 MAITKIHPIKSTLNLAIDYITKSEKTDEKILVSSFKCHPSTAHIQFMKTREDNDTKGTVL ARHLIQSFLPGEVDSIKAHEIGMELCKKILKEDYEFVLATHIDRGHIHNHIIFNNVNYKT GKCYQSNKKSYHKIRYQSDELCKENKLSVIDEYYEAYKRKYRTAGKSWYEYDQNKTGNSW KSKLQFDIDRMINKSNSWEEFLENMKSLDYKIKFGKYIAFRHKDKQRFTRAKTIGEDYAE EKIKERIDLAIKNKANPMKKRVGNVIDISTNKKAQSSKGYEVWARKHNIKTMADSIIKLR GQGINSITQLDDLIKKSADDRQDLLDKIKKIETEMKSLSQDMENIYTINKYREIYKYHKK NPEDKQFADEYYSELSVYKIAAKEILENYKKLPNTKEILSNLDKLQEKKNTLMQEYSLNK EQFSDLVQYRKNYENYYGKEVER >gi|281297079|gb|ADDO01000061.1| GENE 36 29626 - 30177 463 183 aa, chain - ## HITS:1 COG:no KEGG:CLM_2298 NR:ns ## KEGG: CLM_2298 # Name: not_defined # Def: DEAD/DEAH box helicase domain-containing protein # Organism: C.botulinum_A2 # Pathway: not_defined # 2 155 664 815 846 62 33.0 8e-09 MIRSKEQLSYYATLMEGWINSKPLKYLIQKTISYYYNSGESKEISLRKDGKIYYMKFDKN NALHINTLINNLIKNLENNIKYKIKTYVSNYQSILRSCGVDLECDWEEYIDYGTTNPQII DIQNLGFSRTMAIFLMDKYYNLFIRNDIGEIIDIDDEKLRTSIDKKKYDEEYKELNILFE WEK >gi|281297079|gb|ADDO01000061.1| GENE 37 30382 - 32202 1388 606 aa, chain - ## HITS:1 COG:yfjK KEGG:ns NR:ns ## COG: yfjK COG1204 # Protein_GI_number: 16130545 # Func_class: R General function prediction only # Function: Superfamily II helicase # Organism: Escherichia coli K12 # 94 509 62 443 729 85 23.0 4e-16 MNNFIDYISSKAYTDDYLINLIYNLEKNFCNKLLDQDYKIDLSNKEKCDLMRFADILCRS SKDEHKNLSLRIVSLVYEFKELLEDKFIKLSIINVLTKLGNFPSINLIGIKDENTGIDEI DLDLIIKRVYNESPIKEIFTDEQLKIFNELQTNNHFSFSGSTSFGKSFIFEAFTKYLIEE HNQSDNIAFIVPTKALINQVSYKIRKLVKSYSYKVINSPEIPKVIKRQDGKYIFVFTPER LIAYFLDTTNPKIDYLFVDEAHKLLSVKDTRTPLMYHALVMAKRKSINIFFASPNIPNPS VFLELVNNTPDESYAVKVESVSQNRFFVNCHTDYSYMISDYGEDILFPKLNFSGNVITDL GIILNTFSNGRQSIVYCNTIEKTILTAFEFARTLGEVRDENIDKLIDIINEKVHEQYYLR YCLKKGIAYHFGGIPEEIKIRVEELYKLGVIKIIFCTSTLLEGVNLPAKNIFILSEKIGL SNMNEVDFWNLAGRAGRLSKDLAGNIFCVNLYNQQGYWNDDSKIKILRDKNIDETKPIIL RKNNKNLYKNIANYYTRNDYTNKKLSEDDKKIIEMYGNILLYHDTVNSDSVLKDRFIDSG NNFLDV >gi|281297079|gb|ADDO01000061.1| GENE 38 32199 - 33113 665 304 aa, chain - ## HITS:1 COG:no KEGG:CLM_2299 NR:ns ## KEGG: CLM_2299 # Name: not_defined # Def: hypothetical protein # Organism: C.botulinum_A2 # Pathway: not_defined # 25 302 26 298 300 163 37.0 1e-38 MIVSQNSKDLIKIFQNIKDIPISTNLDDGNLNIFMCPINARKFDYNQISLVLVDSVIDYA ISKKNITKYQNKPGRLSQIARKKFKEYLDNTGELGELLLYCFLEGHLNAPKILTKMEMKT SNSLYVNGSDGVHLLNNGDGTYKLIFGESKLYKKLSDALNAAFNSINDFINENNPNGKNK TGINYEKDLISSNIENCELSDEDKDVLELLIYPTKNEKKIRIDDAFSIFIGYETDISNET RSCTSNNFSDEVKKKILLDLDKYENKIYEKIKDNNLLGHTFFVYIIPFTDIDITRRKILK DILT >gi|281297079|gb|ADDO01000061.1| GENE 39 33217 - 33423 252 68 aa, chain - ## HITS:1 COG:SPy0544 KEGG:ns NR:ns ## COG: SPy0544 COG3655 # Protein_GI_number: 15674643 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Streptococcus pyogenes M1 GAS # 1 63 1 63 69 61 50.0 4e-10 MGFSYNKLWKLLIDKNMKKTDLQYAIATTPKTIAKMGRDENVSLETLGKICEYFQCDIGD IIEYKKLS >gi|281297079|gb|ADDO01000061.1| GENE 40 33569 - 34225 919 218 aa, chain - ## HITS:1 COG:no KEGG:MGAS10750_Spy1699 NR:ns ## KEGG: MGAS10750_Spy1699 # Name: not_defined # Def: hypothetical protein # Organism: S.pyogenes_MGAS10750 # Pathway: not_defined # 1 218 1 218 218 299 95.0 5e-80 MEYKDIRENLEEMMNDNYKDFIKALVSIEKGVNDEKALEEVYVLFMIKDTTGLLSDDFDY MIDDMKEQGKIVENTSDIEEKDDLINLVGNIAGKVENLERENANGEKFKVSNFSIVSKDD DGNKIYTNCSAYGDKTKDLENLKQGDFVKIFGQVKTSIDNNGKEHKNVRILSSKLLKAKE QVKSQDKDKKSIIGQIKSFKTDDKTKSNKKNHSKGTER >gi|281297079|gb|ADDO01000061.1| GENE 41 34269 - 41888 7572 2539 aa, chain - ## HITS:1 COG:AGpT188_2 KEGG:ns NR:ns ## COG: AGpT188_2 COG4646 # Protein_GI_number: 16119916 # Func_class: K Transcription; L Replication, recombination and repair # Function: DNA methylase # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 1046 2331 2 1305 1315 610 30.0 1e-173 MQVNDFKNIQEAIKYEVLQDEKEYLKLLKVIGNNQKYDFSSQLSIYNKEPEARACATFDM WKKYFGRVVMRGQKGIPILVGSDVNKKVSYIFDISQTTSMDRNINEVSLWQFDHENHNEA LKEIIRDSSFEASDSLNENIFSLSRIYGDEYINLALADLRIDIEDRLSFEKFMRDSISYA VANRFNTVYPMDMENLKNNFSRINTISLEQIGLVISRVSENIIDSTIEKSKEIDRARLLT ERAGGDYNRDIENINEDRGGQDDLYRRDDRSRSRDGRVFTDGSDRGNSDEDRRENLGHDG EGSGIYGEIPESNIRSSKTVLPGRERGHGELEETSENVRGENTFEPSEGNSESGSGLYQE RESQNDESTRVDREDDERESRGIPRTDEQLDGNSEKDGNQGIRGSLENEISQEKEADEAS FFDDKNTENRKDYWIVEFNENHELVPDYSGQIVTKDLINILRQKDIDVKDHNLTHGENEF GEMTDDYIGYFKFYFDHYVDGEVVEHYRIDLGDGEEVNEREFSYLEEQVALSEEKSLQEE VKEKIEPKFKIGDQVRYKDKDFTITDFDELSGGLKTVTIRDNMEYMGGMIRGSEVIPYRN DSYLEEIFENLSQTSEKLAVKVGKEFILEDENTFDGINLIETGTKVEVNGEEFPLYKGET FEESRKIDDLLDSGNYEIYKLSEHEKQIERQVEQESFIDNHNPEIDQMMDRYNVPREAAE NLLRGKEDLKNLGYESNKERLSFARNYDLRNHIYSEYLTPSEKLDKNIKAIKMLKRLENE NRSPREYEQAYLADYLGWGGLADVFDEEKGGQWLEARNILKENLTNEEYLNAKESTLTSF YTPREVMDGIYKTLTDMGFKTGNILEPSAGVGNFIGNMPSEIQASRVYGVEKDSLSGRIA RELYPEANIQIKGFEETNFSNNFFDLVIGNVPFGDFKVNDREYNRNNFLIHDYFFAKSID KVRNGGIIAFITSSGTMDKKDESVRKYINARCEFLGAMRLPNTTFKGLAGTEVTSDIIFL KKRDSVIERDDDWIHLATDNKGLTYNKYFVDNPQMVLGDMKEVSGRFGNTITCDEKEDEN LKDLMDFASKEISSNSKYEELSLPATDDVKNFSYTIIDEEVYLRENSVLIKQNISDKNKE KIKDYLDIMNALKDVIEKQKDDFSDEEIKESQAKLNEVYDNFSKKHGFINSLSNTRALNE DSNFPLVSSIEILDDEDNFKAKSDIFSKRTITKAKVVDHVDTSLEALVLSVSQKGYVDFE YMESITSKDRDTLIGELEGEIFLDIKDTDLINNRMPFENFNNDDPFHFSYVSADEYLSGN IREKIGYLNSYIGETENVIDLAPSEKKDTLLNELGKLKYQREKLQEVMPEELTASDINVR LGATWIPQKDIEDFTFNLLKTPGYDRWNINVRFSPHASEWNIEGKSVDSTNDLANMTYGT SRVNAYKLIENALNLKDTKVFDQVINDDGSKTSVLNKKETMLASQKQELIKEEFKNWIFE DPDRRYRLEKIYNEKFNSIRNREFDGSNLTFDGMNTEIRLREHQKNAIARTLYGGNTLLA HVVGAGKTFEMVASAMESKKLGLASKSLFVVPNHLTTQIGREFMQLYPSANIMVADKKDF QPKNRKRFIGSIATGEYDAVIIGHSQFEKIPMSKEYQVRHIRDQIDDIVSFIDENKRNRG ENFTVKQLEKTKKKLLVRLEKLNDDFKKDDVITFEELGVDKLFIDEAHNYKNLFLHTKMR NVAGIGQSEAFKSSDMYMKCRYMDEMTDGKGVVFATGTPISNSMTELYTMQRYLQYDDLK ARGLEHFDAWASTFGETENTFELSPEGTGYRQKTRFSKFYNLPELMSMFKEVADIKTSDM LNLPVPEANFEVIKTKPTEEQKEILEAISERADAVRNNQVEPTEDNMLKITNDGKKLALD QRLINPLLPDDPNSKVNVCVKNIFSIWDKTKEKSSTQLVFSDMSTPKGDGEFNIYDDIRN KLVNMGIPKDEIAFIHEADTDKQKDELFSKVRRGEVRILLGSTQKMGAGTNVQNKLIALH DLDVPWRPSDLEQRSGRIVRQGNENNKVNIFRYVTENTFDAYLWQTIENKQKFISQIMTS KTPVRVAEDVDEASLSYSEIKALATGNPLIKEKMDLDNEVTKLKMLEANYKSNKYKLEDK VNKIYPQSILKTEMEIQAVKEDIASVEKLGEGDSKFTSISLGTNKILDKKEAGEKLLEEI KKLKINDSKVIGKYRNLDLQVSYNFMTNTHTFKLLGKAEYFGEFSNSTDGNITRLDNAIE KMPSRLERLNQNLENYKESLENAKVELTKPFEKADELRDKTLRLAEINKLLDMGEVEELE NQSPLLEDLKRAIVDYSNYEFSESNSYEDFDKLYPDLSHIGLAYTETPDGKHSIQYEVNL EEKTWTQYVDNVAIRTESFVEEDIPNSQAIKDMTEAIKMSSFDDLVSVDEEDLKQALGLE IDDDGNFYDPLAKDLDNDGIPDRYDNDFKDSDYFESTYDVEDNLHSREEKPSILGQISKF KSEEEKDKNQEKSEKGQER >gi|281297079|gb|ADDO01000061.1| GENE 42 41973 - 43475 1202 500 aa, chain - ## HITS:1 COG:no KEGG:NGO1197 NR:ns ## KEGG: NGO1197 # Name: not_defined # Def: hypothetical protein # Organism: N.gonorrhoeae # Pathway: not_defined # 1 498 40 535 539 519 56.0 1e-145 MDIKEFISKFKNHPVLFVGTGMSLRYLENSFSWDALLKRISFDLTNSDEYFYDIKSKHHD EYGYKYDLIASDLQKRFDEDVMKDRNGKFKYINDEFYALMDKGKNISRFKIYISKILNEL DYKNIDELNELKKSRKNISSIITTNYDVMLEDIFGFKPLIGNDILLSDPYGSIYKIHGCV TQPDKIIITNEDYNKFNEKYELIRAQLLSLFMHNPIIFMGYSISDNNIKSILKTIFTYVD PNSDEAEKVRRNFLLVEHEKGSDNTQVVDHDIDIQGIPTIKINKIKTDNFTLIYKTLANL QLPVSAMDIRKVQNVFRDIKSGGEIKVSITDDLDSLKNSEKVIAVGSVNTIKYSFQNTSE IMKNYFKIIEEENFQLLEVIDKLIIQSQQFFPIFGFSKINKNIERTDDLKEKQREKMRVL EKTMMEKKNLKGAPNTIREILESETIGISLKPNLIAYQILKGNITLEDAENYFKSLSEED KTKTEYRRQLCAYDLKKYDV >gi|281297079|gb|ADDO01000061.1| GENE 43 43531 - 44469 678 312 aa, chain - ## HITS:1 COG:CAC1222 KEGG:ns NR:ns ## COG: CAC1222 COG0270 # Protein_GI_number: 15894505 # Func_class: L Replication, recombination and repair # Function: Site-specific DNA methylase # Organism: Clostridium acetobutylicum # 4 312 7 304 314 292 49.0 6e-79 MNKVKILELFGGIGAIRKAFINLKIPYEVVDYVEIDKACVKSYNALYGENYKPKSVVGYK APNEKIDLIMHGSSCQDFSRIGKKQGGVKNSGTRSSLLFETIRIIKEMKDKPKWIIWENV KGILDRNMRDSFFIYLKELENLGYESKYEILNAVDFGIPQKRERIFVVSCLGANNFSFNK LERKETRPLSEFLEKNVSELYTMTQPYMLKFLNKGIDNSFRGRLKVIKDFSYTISTKQMR VPNSGIIDIGNGQYRYLTERECLRLMGFDDSDIDKLEGVHPRRKNCTSSKLYKQAGNSIV VDILMAIIKVLL >gi|281297079|gb|ADDO01000061.1| GENE 44 44462 - 46183 1522 573 aa, chain - ## HITS:1 COG:CAC3567 KEGG:ns NR:ns ## COG: CAC3567 COG0550 # Protein_GI_number: 15896801 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Clostridium acetobutylicum # 3 564 5 591 709 400 42.0 1e-111 MKLVIAEKPSVAVTIAKVIGARTRKNGYYEGNGYIVSWCVGHLIQMASPEIHDEKWKKWS IDTLPIIPEEYIYEVSKNTKKQYGVLKKLLNDKNIDTVINACDAGREGELIFRLVYNQAK CKKKIKRLWISSMENKAIEDGFRNLKDGENFEDLYRSASARATSDWLVGMNLSRLYSCIY KETYSVGRVQTPTLYLIAKRDSEINLFKKKKYYTVDLSYKGLKLVSDRIDRIEVAEQLLN LLEDEIVITEVEDKEISTKPDKPYDLTTLQREANKYFGYSANDTLNLAQALYEKKLITYP RTDSRYLTDDMVTTMKELLEGLEEDFKINESNFKSIFNSSKVTDHYAIIPTISGIGKAKD LSDKESKIYNLIKDKLLASCSDNLKESSRKIRYEYDKFNFNASGKTVIDEGYTKYLKSYG KERQENELPYVKTGDKIKLTSKNISEKFTKAPSHYNEDTLLKAMENAGVESLDKDIEVER KGLGTPATRAGIIENLIHKDLIRRDKKNLLVTEKGNRLVSIVEDKFKSAETTSEWEMKLA KISSGEVDKEDFLREIENSIRELVDRYKNNLNE >gi|281297079|gb|ADDO01000061.1| GENE 45 46276 - 47259 782 327 aa, chain - ## HITS:1 COG:no KEGG:Apre_1821 NR:ns ## KEGG: Apre_1821 # Name: not_defined # Def: hypothetical protein # Organism: A.prevotii # Pathway: not_defined # 1 327 1 327 327 556 90.0 1e-157 MNKFYIENKEDLRVLIVNTARKKNISEAVIEKDYWVTFILHYLFNENKWREYFTFKGGTS LSKCFGLIERFSEDIDLILDWRVLGYEEKEPWIERSNTKQDKFNKEVNEKTEIFLRDEFI KVLEEDLKNLGFEFSIDSVDPQTILCKYPKIFESNYLTQNIRLEIGSLAAWTPAIEVGIL PIIGEAYPNVFKEKTCIRTVSAERTFWEKATILHHEANRPESSPMPHRYARHFYDLYKIV NSDYKNKALEDKELLKKVTEFKMKFYPRKWARYEDALNGRLRLVPRDYRFSEIEKDYKAM SEMIYGEYPNFEEIIKVLQELEKEINK >gi|281297079|gb|ADDO01000061.1| GENE 46 47261 - 47863 734 200 aa, chain - ## HITS:1 COG:no KEGG:Apre_1820 NR:ns ## KEGG: Apre_1820 # Name: not_defined # Def: hypothetical protein # Organism: A.prevotii # Pathway: not_defined # 1 200 1 200 203 324 87.0 1e-87 MSSYTEKISDKINSFEINKVFFANDFLDITSYDTARKTLNRMVNERKIKRVIDGFYYNPR YSELIGEYEAVSIHELALAIARKYNWNIAPYSSTALNLLGLSTQVPTHYKYISSGRYKEY KIGDTILEFKKVNPGEIANMSLKTATVIQAIKSLGKDNIDDQVIQKIRENLTEKEKSDLM NESKSVPAWIYEVIREISEG >gi|281297079|gb|ADDO01000061.1| GENE 47 47937 - 48797 952 286 aa, chain - ## HITS:1 COG:no KEGG:FMG_0957 NR:ns ## KEGG: FMG_0957 # Name: not_defined # Def: putative bacteriocin # Organism: F.magna # Pathway: not_defined # 1 262 1 262 288 410 97.0 1e-113 MNKSIKRGVAIALLLFTFTVPATTFAMTNEGQIESQNESIYEPQKEEFEKILKDDVFTPS KEEIPYQDVPRIPGNTSEANKPSNNPPKKTPLVKGGNTKAVNNLATQENKARGSVIENVD RNGKDITPSGDTEKDKENPVDVRQFITFQTKSGKTMHLIVDHSSNQDNVRLLTEVGEQDL LNMIESEDKNTIKVEEPKKEEVKKEEPKTVPVKEEKKSGIGSFLIVALVIGGVVGAGYYF KVVKAKEDRMLEDFEEDDEDYISESEDESDNEESHEESLDEDDELL >gi|281297079|gb|ADDO01000061.1| GENE 48 48812 - 51163 2593 783 aa, chain - ## HITS:1 COG:ECU04g1000 KEGG:ns NR:ns ## COG: ECU04g1000 COG5022 # Protein_GI_number: 19074177 # Func_class: Z Cytoskeleton # Function: Myosin heavy chain # Organism: Encephalitozoon_cuniculi # 281 606 998 1319 1700 69 25.0 3e-11 MKKFNTNRLRAFFMALLLVLTSTVHTSAFAKSDVTWTEDDFMYSSEGNIIAFSDKGLEKK EKTNILVFPEGTKSINGNYSLSHSNDELRYKREFGRGKHWDKVIIPDSVKHLGYAAFYDA SIEEVKLSNSLTYLGGLAFFNCGLREVTLPDTLVNIEHNAFERNNLQEITIPKSVKTIEQ YAFSRNKLHTVKVLGNPDINSKGVFHNQEVEYRPKQNPFYENHFGFNGNQGIKSIPNGLR YENGEFVFDKNVDSVELEFDYNNDMYQGKMTIYNPNKYSIDSQTDLTGQDIDEKDNKIDD LTKNIKDLEKQIEDLNDKKQEDQSQIDELKEKLESCKDNGEKLKQEKARLEEEIRDKDNK IAQLNKEIEDLKNSNNDELIAEITQLKDELKRLQDENAKLKEDYSSTKWELEAEKEKVDK NENKIKEMQEKLDSLEEELEKKTKEIEDKDNRIKDLEKALDEKDAKIKDLESKKKETENS KSECCKKIEELQKAIDSLKESSENTKKELEDKIKELEDKQKASEEEIKKLKEELDKKIEE AKKLIEEANKKSKEELEKQAKDEKDKNLNQDLSKKLDELLKLQKENKEKKEDKKSQDKKW DELLKADDKNILNQFDLNKMKKLEEQQDKKQVKDEKEFAVFQVDKNFYNIINKDGKTTVY MDVKTYVDQGRTMIPVRYIAYTLGFNVEYDNSTREAIFSNKENNILAKKTLRLNIDTGVM KDSDGKVYNSDVKPVIINGRIHASISNIAKAFGASHGDIKDGKNQTIEWDNARKAVYVFK NVK >gi|281297079|gb|ADDO01000061.1| GENE 49 51403 - 53982 2363 859 aa, chain - ## HITS:1 COG:lin0591_4 KEGG:ns NR:ns ## COG: lin0591_4 COG0791 # Protein_GI_number: 16799666 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell wall-associated hydrolases (invasion-associated proteins) # Organism: Listeria innocua # 736 857 108 223 224 103 45.0 1e-21 MDKKLKKDFQKKIIRNRDAPEKNLESKLVHSDDYTNKIIKTKDRFGDKISEKESKLIHEN VLAKDQKQDKLKDFQKSKNKERIRKEVLENKDKAGETKQTNLEIRTDESFKLDEELDVDF KKVNFGSENSRNINSNKLTTDDISANAQPISNKKASSKRQVLKNYEDKLIHSKDKFQDKI NEKESKRIYTSEDKPIEAKKSKRVYRKDKLVKDDVSKNESNTNIDKKEKQKLYQEKKFRD KEKNSKEIDKENKLSEVDTDKTFDNSKVKDNNPEFIKDEKETSLKASEQKKVNKKKTYYK RKNYESDKFTRKKIDDLKKEAKKVTSKDSKKAQDVKDFISDKKIGELEKSKSKLKDNILK NKTKGSLSSGFLLSGAKSSELVRDYLSSGSDNTGVESGEKAANVSSKLQHGIRKYKLDKK KKSLKKLSKLDKKIRKRKSKLEFKSGLEDLKKSDAYIKKNRFKKFYQRKQMKSMIAKKHE TRLVDRVKKAILSLGKASKELIVRKSKMVLILVIGLGLMLSIMIGGGSVGMSGLSNSVNS VMTTTYLSQDTVLSEVNQEFSSMEYDLQSQIESVKTSHPGYDEYIINKEGEIGHNTHELL SYITSRCGELKSASEVKGILKELFDKMYKLDFKEEIEIRTRTVARTRYDSRGNPYTSYEK EEYEYKKLIVTLKKKEMDEVVREIFKDYPDNVVHYEALLEAKGNMGDVFGSSNGDLGEIV DNPNFGNPGLAFDSQTAKALFNEAEKHIGKRYVFGASGPSNFDCSGFVCWSFTKSGVKRM PRTTAWRIYKDYCNPVSPSEAQPGDIIFFHSTYNSGTPISHVGIYAGNGMMIHAGDPIQY TSINSKYWKSHFYGFGRPR >gi|281297079|gb|ADDO01000061.1| GENE 50 53990 - 56413 1784 807 aa, chain - ## HITS:1 COG:CAC2047 KEGG:ns NR:ns ## COG: CAC2047 COG3451 # Protein_GI_number: 15895317 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type IV secretory pathway, VirB4 components # Organism: Clostridium acetobutylicum # 283 777 74 594 617 89 21.0 4e-17 MKQRKKQISDLNLREKQLKKDRKEVRRLKTKKDPKNSLLSLLLKKEKKRFTVEDTIPYIR MLSEGICQLDEKNYSKTISFQDINYQLALEEDRDLIFNQFANFLNSFDPSVHIELSYVNQ LGRNKDLQDAIKIADKGDFYDDVRKEFREMLKLQLAKGNNGLKKMKYITFTTEADNLEQA RAKLNRLEVDILSNFKSMGVRAESLDGEERLRLVHDMLNPDKNFDFSYKDLKKKESTKSH ITPNIFNFAPANNFKFGKYIGAVSHFQILASELSDRMLSEFLDIDDNIYVAFHIDVVEQA EAIKLIKRKNTDLDRMKIEEQKKAVRAGYDMDIIPSDINTFGADVKSMLSDLQNRDERLF VVTIAMMNFARTNQKLENTIAQISSIANRHNCQVKRLSHQQEQGLVSVLPLGVNQVEIKR FLTSSSTAVFMPFTTEELFIDSANSLYYGLNALSQNLIMADRKKLKNPNGLILGTPGSGK SFSAKREMANAILVTDDDVIICDPEGEYSNLVKQFNGEVIKVSAKSKDYLNPLDINMNYG DGDAPLKDKANFIMSMLELVVGGSGLTAAEKSVIDRCLPKIYQKYFEDPKPENMPILGDL YDMLLSQEEGVGRKLATEMEIYVKGSLNVFNNRSNVDLNRQLLCFDIKELGTQLKKIGML VIQDQVWNKVSLNRGSKSTRYYIDEFHLLLKDPQTASYSVEIWKRFRKWGGIPTGITQNV KDLLTSQEIENIFDNTDFVLMLNQASGDRDILAKKLKISPYQLNYITNSNAGEGLLFFGN TIVPFIDKFPKDTMLYKLMTTKPEEAK >gi|281297079|gb|ADDO01000061.1| GENE 51 56304 - 56714 429 136 aa, chain - ## HITS:1 COG:no KEGG:MGAS10750_Spy1689 NR:ns ## KEGG: MGAS10750_Spy1689 # Name: not_defined # Def: hypothetical protein # Organism: S.pyogenes_MGAS10750 # Pathway: not_defined # 1 136 1 136 136 209 98.0 2e-53 MAYVPIPKDLDKIKTKVAFNLTKRQLIGFSVAGLIGIPTYLFMKKYLPNDVSIIVMLIVT LPIFFITLYEKDTLTFEKYFKFFYLHKFYQPTKRIRKEAYLEAKKKANQRLKSKGKTIKK RPKGSKKAKNKERSKK >gi|281297079|gb|ADDO01000061.1| GENE 52 56716 - 57006 409 96 aa, chain - ## HITS:1 COG:no KEGG:FMG_0962 NR:ns ## KEGG: FMG_0962 # Name: not_defined # Def: hypothetical protein # Organism: F.magna # Pathway: not_defined # 1 96 1 96 96 108 100.0 9e-23 MLKKKNCALLGLGILLGGTYEILKEKKRNEEIRNLKRRINRLGRCHNEFVMYQGEYNDRN EEKQEELEERISYLEEETTSNYDHILELSKEEVEGD >gi|281297079|gb|ADDO01000061.1| GENE 53 57016 - 57879 985 287 aa, chain - ## HITS:1 COG:no KEGG:Apre_1812 NR:ns ## KEGG: Apre_1812 # Name: not_defined # Def: hypothetical protein # Organism: A.prevotii # Pathway: not_defined # 1 287 1 287 287 499 99.0 1e-140 MFGIFDKLTEFFKDMLLGGIKANLESMFLDINDKVGVIATDVGKTPMGWNGEVYNFIKNI NDNVIVPIAGLIITAVLCIELINMVMQKNNMHDTDTFEFFKYIIKMFIAVYLASHAFEFS MAVFDVAQNLVNKVAGVITTSATVSGDQIVAMVDTLKEKDVGALIMILVETSLVRIAIQC ISLTITLIVYGRMFEIYVYSSVSSIPFATMGNKEWGQIGTNYIKGLFALGLQGLFLMVCL GIYTVLIRTVQITDIHASLFSILGYALLLGLMMFKSGTVAKSIMNTH >gi|281297079|gb|ADDO01000061.1| GENE 54 57977 - 59623 1738 548 aa, chain - ## HITS:1 COG:CAC1228 KEGG:ns NR:ns ## COG: CAC1228 COG1961 # Protein_GI_number: 15894511 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Clostridium acetobutylicum # 16 517 17 510 544 198 30.0 3e-50 MIQTNSNHFSFKAAIYCRLSKDDEQKGESASIQNQKELLENYVKSRGWSIYDVYIDDGYT GLNTNRPSFQRLIRDIENKKVDIVITKDLSRLGRNYLQTGYYTENFFPKNNVRYIALNDG VDTFQENNEIVPFKNVLNEFYSRDVSKKMKSAYMTRARQGKFIGCLAPIGYRKDNEDPHK LVIDDETSWIVEKIFDLAFSGYGVQAIRRRLFEEKIPTPTWWNRKKGLRNKKTKLEMTVD GGEYWWDCTTLKEIIENPVYIGHIASQKVNYKFKVGWLSDKPKEEWIIVENTHEPIISED IYNIANEKLKSRRRPFKNGEESIFAGIVKCPDCGKSLNLGRNKSKKREKLLTCNTYRRYG KSLCSQHRIYYDTLYEIVLKDIRKNAEIALKDEKEIIKALEKSREIDNEEEQKFIMDKIY EDQIRVEDLTKKIERLYDDWLDNKISESNFQKILEKSQNEQDYLNQRIKDNQKLIVKEDL EDINVKKWIELIKKHRDIKKLDKETLNELISKIYVHEKEVVNGEITQTIDIYYNFIGNTD TLQVFYNL >gi|281297079|gb|ADDO01000061.1| GENE 55 59627 - 59851 194 74 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282883038|ref|ZP_06291639.1| ## NR: gi|282883038|ref|ZP_06291639.1| conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] # 1 74 1 74 74 83 100.0 7e-15 MTKRQTKYIVKRNYDNRRTDTDAFLRLIKKSSKLNKTNEIEYNKYNIDSNKKECYNKNSF RESCVISENSNKEE >gi|281297079|gb|ADDO01000061.1| GENE 56 60005 - 60748 654 247 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0837_11437 NR:ns ## KEGG: HMPREF0837_11437 # Name: not_defined # Def: phage-associated protein # Organism: S.pneumoniae_TCH8431-19A # Pathway: not_defined # 1 247 1 240 240 320 83.0 3e-86 MATNKRYYWIKLKEEFFTDKRIKRLRRISGGDTYTIIYLKLLLLSLKDEGKLYYDGVESD FIKELALTIDETDDDVMVTVNYLINQGLLEIVTENDEYYLTEIPSLIGSETASTRRSRKS RELKMLQCNTNATHKQQKCNGEIEIEKDIDIDKEREGEIEKDKKSTPIFYGEFKNVRLSK EEYENLKEKLSSHTEIMINKLSRYMKSSGKTYQNHYATILNWYDKDKDKLRQKGLNKKMN YDVGESL >gi|281297079|gb|ADDO01000061.1| GENE 57 61139 - 63058 1320 639 aa, chain - ## HITS:1 COG:CAC1448 KEGG:ns NR:ns ## COG: CAC1448 COG0480 # Protein_GI_number: 15894727 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factors (GTPases) # Organism: Clostridium acetobutylicum # 2 638 3 647 652 426 37.0 1e-119 MKIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGI TSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMG IPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIE GNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNKFYS STHRGPSELCGNVFKIEYTKKRQRLAYIRLYSGVLHLRDSVRVSEKEKIKVTEMYTSING ELCKIDRAYSGEIVILQNEFLKLNSVLGDTKLLPQRKKIENPHPLLQTTVEPSKPEQREM LLDALLEISDSDPLLRYYVDSTTHEIILSFLGKVQMEVISALLQEKYHVEIELKEPTVIY MERPLKNAEYTIHIEVPPNPFWASIGLSVSPLPLGSGMQYESSVSLGYLNQSFQNAVMEG IRYGCEQGLYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQVLKKAGTELLEPYL SFKIYAPQEYLSRAYNDAPKYCANIVDTQLKNNEVILSGEIPARCIQEYRSDLTFFTNGR SVCLTELKGYHVTTGEPVCQPRRPNSRIDKVRYMFNKIT Prediction of potential genes in microbial genomes Time: Mon Jul 18 12:53:55 2011 Seq name: gi|281297053|gb|ADDO01000062.1| Peptoniphilus lacrimalis 315-B contig00009, whole genome shotgun sequence Length of sequence - 28111 bp Number of predicted genes - 25, with homology - 25 Number of transcription units - 9, operones - 6 average op.length - 3.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 87 - 146 9.2 1 1 Tu 1 . + CDS 218 - 964 902 ## COG1414 Transcriptional regulator + Term 998 - 1035 6.2 - Term 985 - 1021 2.2 2 2 Op 1 4/0.000 - CDS 1184 - 1780 642 ## COG0218 Predicted GTPase 3 2 Op 2 18/0.000 - CDS 1781 - 4102 2549 ## COG0466 ATP-dependent Lon protease, bacterial type - Term 4115 - 4141 0.3 4 2 Op 3 24/0.000 - CDS 4167 - 5396 244 ## PROTEIN SUPPORTED gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 5 2 Op 4 29/0.000 - CDS 5404 - 5988 793 ## COG0740 Protease subunit of ATP-dependent Clp proteases 6 2 Op 5 . - CDS 6024 - 7406 2157 ## COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) 7 2 Op 6 . - CDS 7466 - 7687 224 ## COG4443 Uncharacterized protein conserved in bacteria 8 2 Op 7 . - CDS 7674 - 9386 1990 ## COG0442 Prolyl-tRNA synthetase - Prom 9410 - 9469 9.2 + Prom 9506 - 9565 16.0 9 3 Op 1 49/0.000 + CDS 9695 - 10627 909 ## COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 10 3 Op 2 44/0.000 + CDS 10627 - 11661 793 ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 11 3 Op 3 44/0.000 + CDS 11670 - 12662 529 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 12 3 Op 4 2/0.000 + CDS 12662 - 13645 870 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 13 3 Op 5 . + CDS 13676 - 15349 2358 ## COG4166 ABC-type oligopeptide transport system, periplasmic component + Term 15420 - 15477 6.5 + Prom 15592 - 15651 10.0 14 4 Tu 1 . + CDS 15690 - 16883 881 ## COG0732 Restriction endonuclease S subunits + Term 16996 - 17031 2.3 + Prom 17136 - 17195 8.3 15 5 Op 1 . + CDS 17225 - 18157 741 ## EUBREC_3455 hypothetical protein 16 5 Op 2 . + CDS 18157 - 18927 526 ## Dred_0028 hypothetical protein + Term 19009 - 19051 4.0 - Term 18993 - 19044 9.3 17 6 Op 1 . - CDS 19051 - 20262 1346 ## COG2195 Di- and tripeptidases 18 6 Op 2 . - CDS 20274 - 21257 1007 ## COG0340 Biotin-(acetyl-CoA carboxylase) ligase - Prom 21403 - 21462 80.3 + TRNA 21373 - 21462 70.9 # Ser GGA 0 0 19 7 Op 1 . - CDS 21731 - 22435 700 ## gi|282883100|ref|ZP_06291700.1| hypothetical protein HMPREF0628_0103 20 7 Op 2 2/0.000 - CDS 22422 - 23270 729 ## COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase 21 7 Op 3 . - CDS 23333 - 23599 341 ## COG4466 Uncharacterized protein conserved in bacteria - Prom 23672 - 23731 8.0 22 8 Op 1 13/0.000 - CDS 23753 - 24541 236 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 23 8 Op 2 9/0.000 - CDS 24538 - 25407 1002 ## COG4120 ABC-type uncharacterized transport system, permease component 24 8 Op 3 . - CDS 25434 - 26417 1308 ## COG2984 ABC-type uncharacterized transport system, periplasmic component - Prom 26600 - 26659 7.7 25 9 Tu 1 . - CDS 26746 - 27720 1286 ## COG2984 ABC-type uncharacterized transport system, periplasmic component Predicted protein(s) >gi|281297053|gb|ADDO01000062.1| GENE 1 218 - 964 902 248 aa, chain + ## HITS:1 COG:BH3725 KEGG:ns NR:ns ## COG: BH3725 COG1414 # Protein_GI_number: 15616287 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus halodurans # 1 246 1 249 251 100 27.0 2e-21 MIQSLVKAANVLNFLRTENRELTIAEISEHLDLPPSTAHRILRTLISVKYVYKDEKTHLY SLGSGLIPLGFSATAFVNPQRETSEVLKELSLQTGEDSFLIIKSGRKGLVISKVEGKHPL KIVENFGYEIDLHWGAIRKVILAFQSKEFIDKYISEGLSDNLNGKVDVEKLKKELEEIRK NMVSTSNSDYITNAAGIGAPVFNYNGELLGALGIVLPKERMTEENKENFINSVKSCAEKL SKNIGYTN >gi|281297053|gb|ADDO01000062.1| GENE 2 1184 - 1780 642 198 aa, chain - ## HITS:1 COG:SP1568 KEGG:ns NR:ns ## COG: SP1568 COG0218 # Protein_GI_number: 15901411 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Streptococcus pneumoniae TIGR4 # 12 186 14 188 195 184 53.0 7e-47 MKVKISDLEKVAVKKETYPANNLPEFAFAGRSNVGKSSFINAMLGRKNLARTSSTPGKTR TINFYKVNDDLRLVDLPGYGYAKVSKKEKDSWANIINEYLETRENLLETILLVDIRHDPT QLDIQMYDYLLASGFSGIVIATKKDKISKSSVKKNIDNIARKLKAPVKENIIPFSSVDKD EVDELWYIFEDIIKFKKA >gi|281297053|gb|ADDO01000062.1| GENE 3 1781 - 4102 2549 773 aa, chain - ## HITS:1 COG:BS_lonA KEGG:ns NR:ns ## COG: BS_lonA COG0466 # Protein_GI_number: 16079872 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ATP-dependent Lon protease, bacterial type # Organism: Bacillus subtilis # 6 771 9 769 774 745 50.0 0 METLKIPMIPMRDLVIFPKSVTHFDCGREISINAVENAELHDSKIFLASQKDSMVKEPKI DDIYKYGTIAEVKQILKVPGGIVRVLVEGIERARMISLNEEDGYLQAEIEVFEEEEVSEG NKDIEAALRLVESDIYSYGELDDRLIPGLLQSAVDSSTPGRLVDTACSYLNLKLKDSQKI LESVDVYERLVNFHAIMKREIEVLSIEKNIDNQVKTKMNKIQREYYLKEQLKIIHKELGD DEEEEETISKYKRLIKEKNLPDEVREKALKEVKKLENTNSMSPEYSVGVNYLDWILDLPW MEEKKSKINLSKARKILDKNHYGLKTVKERILEFIAVKKLAGNDLKGPILCLVGPPGVGK TSIAQSVADALNRNFVRMSLGGVTDEAEIRGHRRTYIGSMPGRIISLIRKAKTKDPVFLF DEIDKIGNSYRGDPASGLLEVLDPEQNSTFTDHYLELPFDLSNVFFIATANTTSTIPRPL LDRMEVINLGGYTPNEKFNIAKKYLVPKQFEENGLKKNQIKISDRAIRDIIDFYTREAGV RSLEKEISKIARKAALKVVEDDDKFDSIVVTTRNVKNFLGEKRFLIDEVSKKDEVGIVNG LAWTAVGGTTLSIEATIMEGSGKITLTGSLGDVMKESAIAGISYIASNAENFNIDPTFRK TKDIHIHVPEGAVPKDGPSAGITITTAVLSALSNKKVYRDIAMTGEITLRGKVLPIGGLK EKLLAAERFGVKKVLIPMENKRDLEEIEDDAIKNLEIIPISSMEDVAKISLGD >gi|281297053|gb|ADDO01000062.1| GENE 4 4167 - 5396 244 409 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 [Bacillus selenitireducens MLS10] # 159 409 255 453 466 98 31 4e-20 METTEKVLRCSFCGKTQNQVKRLIAGPNVSICNECVDLCNNILANELNSDDTENFDLPKP AQIKHILDSYVVKQESAKKALAVAVYNHYKRINSNKKIENSDIELQKSNILMIGPTGSGK TLLAQTLAKLLHVPFAICDATTLTEAGYVGEDVENIILKLIQNADYDIERAEKGIIYIDE IDKIARKSENVSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPNQEFIQVDTTNILF IVGGAFDGLEKIIEQRTMKSSMGFEAAIYDKNIERKAILKKVETEDLLKFGLIPELIGRL PVTITLEELDEDALVEILTKPKNALVKQYKELMKLDNVDLIFDDDALRDIAKKAIEKKAG ARGLRGVIENTIMNIMYEVPSREDVVGVEVTKASVEGKEAPKLIKKKAQ >gi|281297053|gb|ADDO01000062.1| GENE 5 5404 - 5988 793 194 aa, chain - ## HITS:1 COG:CAC2640 KEGG:ns NR:ns ## COG: CAC2640 COG0740 # Protein_GI_number: 15895898 # Func_class: O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Protease subunit of ATP-dependent Clp proteases # Organism: Clostridium acetobutylicum # 1 190 1 190 193 282 72.0 3e-76 MALVPMVVEQTNRGERSYDIYSRLLKDRIIFASGEVNDTMADLIVAQLLFLESEDPNKDI QLYINSPGGSVSAGLAIYDTMQYIKPDVSTICIGMAASMGAILLSSGAKGKRFALPNSDI MIHQPSGGTQGMATDIQITAEKILKTRKSLNQILAKNTGQKLEKIERDADRDFWLDANEA KEYGLIDKVIENRE >gi|281297053|gb|ADDO01000062.1| GENE 6 6024 - 7406 2157 460 aa, chain - ## HITS:1 COG:CAC2641 KEGG:ns NR:ns ## COG: CAC2641 COG0544 # Protein_GI_number: 15895899 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) # Organism: Clostridium acetobutylicum # 2 432 4 431 431 247 40.0 4e-65 MEIKSKEKNTVSFDLVLKDKDIKDAETEVYKKNKKSLQVPGFRKGHVPRKLIENMYGKDV FLEDAINEILPEVYAKAVKELKLDVIDQPNIDIPEERKDGEDLIVNVKVDVKPEAKLGEY KGLEIEDPTMEVTDEVVMQEVENEREKNARIINVDDRAAQKGDSVNIDYKGSCDGEYFKG GEDKGHDLELGSGAFIEGFEDQIIGHKVGEEFDINVKFPEDYRDENLKGKEAKFEIKLNG ISYKELPKLDDEFVKDISEFDTLEEYKEDIRKNKQEEYDVNAKMEKQRRIVEKLGEIAEV EVPEVMVNRQIDEILQNYERSLMGQGISLNDYIKMTGSSIEAMRESLKEGAKNTVKNDLA LDALVKAENIKISDEDVEKEVNEVVEDYFKDDKEHMEKMRSYMLNENKEQIRDDLAKRKA VDIILESAKLVEPKKLSEEEAQKAKLAKEEIEKLTEEENK >gi|281297053|gb|ADDO01000062.1| GENE 7 7466 - 7687 224 73 aa, chain - ## HITS:1 COG:SP0782 KEGG:ns NR:ns ## COG: SP0782 COG4443 # Protein_GI_number: 15900675 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 1 69 9 77 79 89 62.0 2e-18 MADFKFEIVEHLGVLSEDAKGWTKEINKVSFGGRPAKYDIRSWDQDHLKMSKGVTLNDEE FENLISILKVKGF >gi|281297053|gb|ADDO01000062.1| GENE 8 7674 - 9386 1990 570 aa, chain - ## HITS:1 COG:FN1658 KEGG:ns NR:ns ## COG: FN1658 COG0442 # Protein_GI_number: 19704979 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Prolyl-tRNA synthetase # Organism: Fusobacterium nucleatum # 1 565 1 563 567 563 50.0 1e-160 MRLSKLYMPTLREDPQDAEIVSHKFLLRGGFIRKSASGIYTYLTLGYRVVRKIENIVREE MDRCGSQEILMSAIQPREIWEDSGRWEKYGPEMFKLKDRHDRDFCLGPTAEEYFTTLIKD EVNSYKDLPLNLYQIQTKYRDEKRPRFGINRAREFSMKDAYTFDEDLEGLEKSYMNMYRA YEKVFDRLSLNYKIVEGDNGAMGGSGSHEFIALAESGEGVIVFSENGKYGATDEKAPVEY KAPQKEDKKELEKVYTPNCSSIDDVSKFLNIEKGRCAKAVDLMIEDKPYIVLIPGDRQLN LIKLVSILKVAEHKVRMMNDKEILNIGSCPGFTGPIELNEDVKVLVDASLKDIDNLVIGS NEENYHYINANYGRDFKGEIAGDLLLVEQGDLIPGTCDEYKFARGIEVGNIFQLGTKYSK SLNATYLDRNGKAQYFYMGSYGIGITRTVAAIVEQNYDENGIIWPVATAPYECIVTVINP NNEEQKELGEKIYKSLQEKGIEVLIDDRDLRAGVKFKDRDLIGIPVRITVGKKASDDVVE YSLRKEMKNSEISSQSAIESAIKEVYDGRL >gi|281297053|gb|ADDO01000062.1| GENE 9 9695 - 10627 909 310 aa, chain + ## HITS:1 COG:CAC3644 KEGG:ns NR:ns ## COG: CAC3644 COG0601 # Protein_GI_number: 15896877 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Clostridium acetobutylicum # 1 305 1 304 306 279 49.0 6e-75 MGKYIITRILQSFLVLILVATITFLLMNMVPGSPFLSEKPPSPEVMEQLNKKYGLDKPLS VQLKRYLINTLKLDFGVSLKMQKNRPVIEIIKEMFPTSAKIGIIALSWSILVGLPLGCLA AYHRGDGVDSFLRVLTTIGISVPGFVVATLLLIFFGVKLKVLPTMGLGKVSAYILPCFSL GFNPMCYIARLSRSSMLDVINQDYIRTARAKGVPASKILFKHALRNAFIPVLTYLGPLTA SILCGSFVVESVFSLPGMGRYFINSILNRDYPIIMATTIFFAALVIFMNLVVDILYKFVD PRIDITKGGN >gi|281297053|gb|ADDO01000062.1| GENE 10 10627 - 11661 793 344 aa, chain + ## HITS:1 COG:BS_dppC KEGG:ns NR:ns ## COG: BS_dppC COG1173 # Protein_GI_number: 16078359 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Bacillus subtilis # 20 344 17 320 320 258 42.0 8e-69 MENLTNFFSLQTTPEDLGFEILDNDFLKADAQDKKSFITKRPSVSYWADAWRRLKENKVA MVALGFLIIVIIFAFIGPYFVKGDYTTQFRGDENLYPSLKYPFGTDKLGRNILTRTMYGT RVSLIVGVFASLIVLIIGSLYGAISGYFGDKIDLVMMRVIDLVYSVPDVLVVILISIGIN EPLRSWVNNSHSAFAQKLSTLGPALISIFIAFGLLYWVGMARVIRGQVLMLKQQEFVMAV NALGGSKWRIIRRHLYPNCIGQIIVMTAMQIPSAIFLESFLSFLGIGVQAPMTSLGAMAA DALGGIYSFAYRLIIPSIILSLMILSLNLFSDGLRDALDPRLKK >gi|281297053|gb|ADDO01000062.1| GENE 11 11670 - 12662 529 330 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 2 323 6 327 329 208 35 4e-53 MEEKNNLLSIRNLKVSFFTPAGEVKAVDGINYSLGYNEVMGIVGESGSGKSVEAYALMGL LQSPGKIKEGSIEFEGENILNYSKKQMEDFRGNKCSMIFQNPMTCLNPVYTIGNQLMEAI LVHKKIPKKDAYDKACQMLELVGISNPKKRMKQYPHELSGGMRQRVMIGMGLICEPKLLI ADEPTTALDVTIQAQILELMKEIQEKTKMSIIFITHNLGVVASICDKVSVMYAGKIVEQG TIDQIFYENAHPYTKGLLASMPRIDATEYERLKSIEGTPIDMLNPPEGCGFATRCGHCMN ICLRKEPPMFEMSKDHYSKCWLHLNRKGAI >gi|281297053|gb|ADDO01000062.1| GENE 12 12662 - 13645 870 327 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 6 323 11 324 329 339 54 1e-92 MEDKKLLVCENIVKHFDVSGPFGKKNVVHAVDDVSIYINKGETLGLVGESGCGKTTFGRT LLRLYQPTSGKIIYDGKVIFDGENNISESMLPYRRKMQIIFQDPSASLDPRMTVGEIIGE SLDIHGLYKGKDKRKNRIGELLQRVGLNEEHANRYPHEFSGGQQQRIGIARALAVEPEFI VCDEPISALDVSIQAQIVNMLEDMQEEFGLTYLFIAHDLSVVKHISDRIGVMYLGKLVEL VDSFELYKNPLHPYTKSLLSAIPIPDPEVNRNSHRIKLKGEIPSAINPPCGCRFHERCPM ATEICSKEEPVFREYENGHYVSCHNLK >gi|281297053|gb|ADDO01000062.1| GENE 13 13676 - 15349 2358 557 aa, chain + ## HITS:1 COG:CAC3634 KEGG:ns NR:ns ## COG: CAC3634 COG4166 # Protein_GI_number: 15896868 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Clostridium acetobutylicum # 56 554 45 546 550 356 39.0 8e-98 MKKRIWIIALIFGLVLSLTACGGGNKANNSKSAEGNTEAKGNFEPGREDGELDVCIASEP ESIDPALNTTVDGATMIQHLSEGLVKWDDDGNGTAKLVPGQAQSWDKSEDGLTWTFHLRD GIKFNDGTPVTANDFVYSWNRLVKPETAAQYEYMLDMVDGYDEKALKVEAPDEKTFVVHL KNLCPYFEEICAFPSTYPVKKDVVENNDQWTLSPETYISNGPYKMASWDHNQTIKMVKNP EYYDADSYTAEKINFHLKDDHNAIYASYRSGELDFIGAFAPTEEIPNLIASGELNVRPQI GTYFVCFNNKKAPFDNPDVRKAFSLAIDRNFIIEQVTQAGQVPATAYVPNGIYDAKGPEG EEFRKVGGDYYSVKPEDYEKNCEEARKLLEKAGYKDGKGFPEVTYLYNTNDAHKAIGEAL QNMWQQVLGVTVTLSNQEWNVFINERQQGNYEIARHGWVADFNDPMSFLDMWLTGGGNND AKYENPEYDKLIKEAKATADQGKRMELMHKAEDILIKDDGVVAPIYFYTSTDMVKPNVKG IYYTPLGFYFFGKTSGF >gi|281297053|gb|ADDO01000062.1| GENE 14 15690 - 16883 881 397 aa, chain + ## HITS:1 COG:HP0848 KEGG:ns NR:ns ## COG: HP0848 COG0732 # Protein_GI_number: 15645467 # Func_class: V Defense mechanisms # Function: Restriction endonuclease S subunits # Organism: Helicobacter pylori 26695 # 124 394 4 291 298 152 36.0 1e-36 MSKIDEILKNEKVEWKKLGEICIDKFWVMPTTPKFIQNGIPYITGKNIKDGKIDFDNVKY ISQDDYNNISKNRDILKNDILVSMIGTIGEIGLVCNSIKFYGQNLYLLRLNKKIILNKFF YHYFSQNKIKQGLISKKNSSSQGYIRAGQLEYLEIPIPSLETQEKIVDILDKFTNYVNEL QAELQAELQARNKQYEYYRDMLLSEEYLNKRSSELFIKNNNSITKCKLKDIATITRGKRL VRSDLKEIGKFPVFQNSLKPLGYYYDRNFSGDKACVISAGAAGVIFYREEDFWAADDVLV INSDRILNKFIYYFLLSNQRLIKTKVRKASVPRLSRDEVENLEILVPSMELQKIIVKVLD KFQSLVIDTKGLLPKEIEKRQKQYEYYREKLLDFPKK >gi|281297053|gb|ADDO01000062.1| GENE 15 17225 - 18157 741 310 aa, chain + ## HITS:1 COG:no KEGG:EUBREC_3455 NR:ns ## KEGG: EUBREC_3455 # Name: not_defined # Def: hypothetical protein # Organism: E.rectale # Pathway: not_defined # 1 309 4 312 313 426 72.0 1e-118 MQKNIFGISVRYEEWEYRNYLPVYIMDSYDVYQARIGNTRCIMLKPLEELATLPALTKQI KRIQTIDNVPVVLNLETVTSYRKKSLIKNNIPFITNKQLYLPFIGAMLMDEEETQKPPKK FVYSTQQLFLFYLYNNKKRMYISEAKKHLPYTAMTLTRAVKQLESTNLFFIAKDGVNKFI ESKYSRKDLFTKAKPYLSTPVIKTGYIDKTQVTEDMVFSGETALSEKTLLRPSRVVTYAI NEKDYDKTLLQKELIDPDKSVKLELWAYNPNQFSRNANADDISVILSFKGTADERIEEAI DDLQESELQN >gi|281297053|gb|ADDO01000062.1| GENE 16 18157 - 18927 526 256 aa, chain + ## HITS:1 COG:no KEGG:Dred_0028 NR:ns ## KEGG: Dred_0028 # Name: not_defined # Def: hypothetical protein # Organism: D.reducens # Pathway: not_defined # 1 253 1 253 258 229 47.0 1e-58 MIGGLAKFKERFQGYENQYVIIGGTACSLLMESEELEFRSTKYIDIVLIIESLTVEFGKQ FWAFIKEADYKHRNKSTGDTQFYRFTEPKNNNYPYMIEIFSRKPYFIKLEDDAIITPLPI DEEISSLSAIILNESYYNLLKTEHETIDGIPVLSPTCLIPFKAKAWLDLKEQKLKGKTVD SKNLKKHKNDVFRLVQLITPNTRRFLSQEIAEDMKKFLLEVADEDDNLKSLRIKNFTKQE MIDILYNCYALKDNNI >gi|281297053|gb|ADDO01000062.1| GENE 17 19051 - 20262 1346 403 aa, chain - ## HITS:1 COG:BS_pepT KEGG:ns NR:ns ## COG: BS_pepT COG2195 # Protein_GI_number: 16080943 # Func_class: E Amino acid transport and metabolism # Function: Di- and tripeptidases # Organism: Bacillus subtilis # 2 398 3 404 410 434 55.0 1e-121 MEKLVERFLKYISFETTSDESSDTCPSNPKEFELARYLEKEMKDLGLKDVYLSENCYLYA TLPGTDKNKKTIGFISHMDTSPDMSGKNVNPRIIENYDGKDIKLNEEFVTSLKDFPFLKD LKGHDIIVTDGTSLLGADDKAGIAIIMTAIENLMKSNEKYGDIKIAFTPDEEIGRGADLF DVERFAADFAYTVDGGAEGEFEYENFNAASAKISIQGKNVHPGSAKNAMVNSILIAMELN SLLPADQRPEHTEGREGFFHLNDFNGNVEYSQMYYIIRDHSFEKFEEKKKFLEEAVKFLN IKYDNRIKLEIKDQYYNMKEKILPHMEIVDLALESMKKAGVKSEIIATRGGTDGSQLSYK GLPCPNLFTGGYNYHGRYELVSITTMKKTVKTVENIGKIGVEK >gi|281297053|gb|ADDO01000062.1| GENE 18 20274 - 21257 1007 327 aa, chain - ## HITS:1 COG:SP1900_2 KEGG:ns NR:ns ## COG: SP1900_2 COG0340 # Protein_GI_number: 15901727 # Func_class: H Coenzyme transport and metabolism # Function: Biotin-(acetyl-CoA carboxylase) ligase # Organism: Streptococcus pneumoniae TIGR4 # 73 319 3 248 252 132 38.0 9e-31 MNTKEVVLQELEKNRGIYISGQELADRLKISRTAIWKAINALKSDGFIIDSQTKRGYKLD DASDMISVPGIKEYLIPELKDIDIILYDEIDSTNTEAKRLLYSGEIKNFTCLVSDYQTSG RGRTGKSFKSYKGTGIYYSIILKPKDNFDFSYFDLVTIRSAVSVSKAIEKLLKESPQIKW VNDIYLKGKKVCGILSELDADFESKTVSSIIVGIGINLKYPPKLDEEIKDIFGALNTDIL RNKIIASLLNEFYLSYYEKETESILKYYKDHSLVLGKEVFYELNGQKKQGKAIDINNKGN LLVNVNGKEEILSSGEVSIKGDFLNKK >gi|281297053|gb|ADDO01000062.1| GENE 19 21731 - 22435 700 234 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282883100|ref|ZP_06291700.1| ## NR: gi|282883100|ref|ZP_06291700.1| hypothetical protein HMPREF0628_0103 [Peptoniphilus lacrimalis 315-B] hypothetical protein HMPREF0628_0103 [Peptoniphilus lacrimalis 315-B] # 1 234 1 234 234 402 100.0 1e-111 MAIYDSNVGIINIFKEYDHNLNYYVDNRYSSYGVYGHEEIKIRAKKVYEFLKEEKRIIVS DLDAAGILYKNKNIFYGEDSLKRILKDKNILMLTSKNLKENNFIANIVDANFQTLDVTYL INASLCFAGDLVVEEILRQYLEGINLSSYDLIFFAASPLHLYRDLFKKILNKYRILTNID PILMDYTYIKENILRDYFYLTGSKRDFYLFAENYLRAEKRLKKEEILNISTWSM >gi|281297053|gb|ADDO01000062.1| GENE 20 22422 - 23270 729 282 aa, chain - ## HITS:1 COG:CAC2902 KEGG:ns NR:ns ## COG: CAC2902 COG1947 # Protein_GI_number: 15896155 # Func_class: I Lipid transport and metabolism # Function: 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase # Organism: Clostridium acetobutylicum # 5 273 4 277 280 166 36.0 3e-41 MIVKKAYGKINLSLDVINKRSDNYHNIGSIMAKINLYDVLSFEKKDKGIEIIGDFDFNME DNLIYKAYKLLKDKVGKDLGLRVEVEKNIPQAAGLAGGTADGCATLLALNELYSLNYSLL DLMKISTSLGADFPYMLNNKNMYAQGIGDILEPCGDFFYTNILILNPSYGISTPYVYNNL KLDNKRIDFHKLIDALNNYDYDYLKANLENKMESFVFSEYKDLMEIKNKLREFKGISLMS GSGPTIFSIFQNKDDLNRAYDFYKDTYKNLYKTCGGDFFGNL >gi|281297053|gb|ADDO01000062.1| GENE 21 23333 - 23599 341 88 aa, chain - ## HITS:1 COG:SA0452 KEGG:ns NR:ns ## COG: SA0452 COG4466 # Protein_GI_number: 15926171 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 7 82 8 84 87 62 45.0 2e-10 MNQMEIIKNELKSHVGKKIIVKANKGRKKIVTRKGILKAIYPSLFVVDVFNGDEVVTSTF TYSDVLTSTVKLTILDDDANYSDTKMIS >gi|281297053|gb|ADDO01000062.1| GENE 22 23753 - 24541 236 262 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 4 242 1 229 245 95 28 3e-19 MIKMLKIDNITKTFYKGTEEENRVFENFSLKLEENSCTTILGANGCGKSTLFNIISGEIH PESGQILLGDLKISDLDEQKRATYIGKVNQNPSMGVCPSLNILENMSMALNKGKKFTLRK LVQKSNIGVIVEKLKEIDLGLENKLNTQVKFLSGGQRQSLSLIMATIKRPELLLLDEHTA ALDPKTSKIVMDKTENLIKKEKITTLMITHNLRNALDYSDRIIMLDKGKIVLDVKPKDIS ENELRNEYNIRLRDQEKMKLVS >gi|281297053|gb|ADDO01000062.1| GENE 23 24538 - 25407 1002 289 aa, chain - ## HITS:1 COG:FN2080 KEGG:ns NR:ns ## COG: FN2080 COG4120 # Protein_GI_number: 19705370 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Fusobacterium nucleatum # 4 271 1 266 278 191 43.0 1e-48 MSSVLMESLVTGLIFSILAIGVVITFKILNLADLSVEGTFPLGAFVFAKVLTLGYSPFLA MALAFVMGGVFGYLTYFLYKRLKIDAILAGILTMTILYTVNLRITGTSNVTFYDLDVIFS IFSSIPKIVILLIIVGLIKIIMDWFLKTEKGYLLLATGDNERLVKSLGENPNKFYAYGLI LSNALVALAGSLMAQSTGYCDITMGQTIIVSALASIVIGDAFLKNAKFLNRTTRAIIGAV VYRVIFGIAISAGLQPSDLKAVTAIIVIIFIVYNNMAGLGISKLRKRKE >gi|281297053|gb|ADDO01000062.1| GENE 24 25434 - 26417 1308 327 aa, chain - ## HITS:1 COG:SP1069 KEGG:ns NR:ns ## COG: SP1069 COG2984 # Protein_GI_number: 15900938 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, periplasmic component # Organism: Streptococcus pneumoniae TIGR4 # 6 323 15 339 344 171 33.0 2e-42 MKKLGKFLGLLSLLFLLVACNKESKTEGLSSDNSDKKVKIGIVQMSEHVALDRSEKGFEE EIKKEFPDAEIILKNASGDVTLIPSIVSAFQGQKCDLIYAIATPAAQGAKNIVKDIPIVF SAVTDPVSAGLVKDLEKPEGNITGVSDYISIKMQLENFLELFPQTKNIGVLFSTNEVNSK YQIEELKKACQNLSIGVKEVGVNNINDVSQAMTSFKKDIDAFYALSDNLVASSAKVISER LIENKIPSFAAEEGPVENGILLSNGVDYLDLGRKAGEMAVQILKGSPVKDIPVYFSTESS KVCNENSGKKLNLENLDQVLKDARLIK >gi|281297053|gb|ADDO01000062.1| GENE 25 26746 - 27720 1286 324 aa, chain - ## HITS:1 COG:SP1069 KEGG:ns NR:ns ## COG: SP1069 COG2984 # Protein_GI_number: 15900938 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, periplasmic component # Organism: Streptococcus pneumoniae TIGR4 # 4 319 19 339 344 153 33.0 5e-37 MKKIILSTTLALSLAMLVGCSTKDKAEEKIDDCKYKVGIVQYMDQISLDNAKKGFIDGLK EEGIDAEIEVQNENGDSTLTTTVPKKFQSDDVDLVYAIATPAAQGAKTALPNKNIIFSAV TDPVAAGLVESKDKITNITGVTDAVPIRNHLKTLLELNPNIKTLGLIYSTFEKNSLVQLE EVKKICKDMGLDLEYVGINNINEIPQAIASISGKIDALYALTDNTVASAAPIISKTLNED KIISLSAEEGQVTNGLLMSEGVDYYLHGKQAAKMAARVLKGEDIKNISVEDNKENVKKVN KKTAQALGIDLNSQVFKGAEIVGD Prediction of potential genes in microbial genomes Time: Mon Jul 18 12:55:02 2011 Seq name: gi|281296914|gb|ADDO01000063.1| Peptoniphilus lacrimalis 315-B contig00051, whole genome shotgun sequence Length of sequence - 139705 bp Number of predicted genes - 142, with homology - 140 Number of transcription units - 49, operones - 33 average op.length - 3.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 65 - 628 538 ## gi|282883144|ref|ZP_06291743.1| putative transcriptional regulator, LuxR family 2 1 Op 2 . - CDS 625 - 1638 986 ## COG1609 Transcriptional regulators 3 1 Op 3 . - CDS 1653 - 2546 947 ## COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase - Prom 2604 - 2663 7.5 - Term 2613 - 2658 7.8 4 2 Op 1 . - CDS 2679 - 3170 728 ## gi|300814468|ref|ZP_07094730.1| conserved hypothetical protein 5 2 Op 2 . - CDS 3180 - 3740 911 ## gi|282883203|ref|ZP_06291802.1| putative general stress protein - Prom 3775 - 3834 7.2 6 3 Tu 1 . - CDS 4032 - 4934 289 ## PROTEIN SUPPORTED gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit - Prom 4970 - 5029 9.8 + Prom 4909 - 4968 8.4 7 4 Tu 1 . + CDS 5016 - 5819 490 ## COG0061 Predicted sugar kinase - Term 5812 - 5848 2.0 8 5 Op 1 . - CDS 5855 - 6928 1062 ## gi|282883215|ref|ZP_06291814.1| hypothetical protein HMPREF0628_1341 9 5 Op 2 . - CDS 6933 - 7442 377 ## COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog - Term 7484 - 7516 2.5 10 6 Op 1 1/0.000 - CDS 7522 - 7758 259 ## COG1983 Putative stress-responsive transcriptional regulator - Prom 7783 - 7842 6.0 - Term 7828 - 7863 -0.8 11 6 Op 2 . - CDS 7891 - 11316 4117 ## COG1038 Pyruvate carboxylase - Prom 11339 - 11398 14.3 - Term 11620 - 11672 6.0 12 7 Op 1 59/0.000 - CDS 11688 - 12077 383 ## PROTEIN SUPPORTED gi|227996986|ref|ZP_04044000.1| SSU ribosomal protein S9P 13 7 Op 2 . - CDS 12091 - 12519 529 ## PROTEIN SUPPORTED gi|114567806|ref|YP_754960.1| 50S ribosomal protein L13 - Prom 12628 - 12687 11.0 - Term 12655 - 12708 12.6 14 8 Tu 1 . - CDS 12722 - 19660 7140 ## COG1404 Subtilisin-like serine proteases - Prom 19686 - 19745 10.9 - Term 19808 - 19863 -0.8 15 9 Op 1 . - CDS 19932 - 21449 1727 ## COG4624 Iron only hydrogenase large subunit, C-terminal domain 16 9 Op 2 . - CDS 21471 - 21746 367 ## gi|282883178|ref|ZP_06291777.1| putative NADH-quinone oxidoreductase chain f - Prom 21844 - 21903 10.7 + Prom 21742 - 21801 11.6 17 10 Tu 1 . + CDS 21866 - 21979 88 ## - Term 21982 - 22019 -0.9 18 11 Op 1 . - CDS 22036 - 22539 542 ## COG1267 Phosphatidylglycerophosphatase A and related proteins 19 11 Op 2 . - CDS 22543 - 23070 358 ## COG1525 Micrococcal nuclease (thermonuclease) homologs 20 11 Op 3 . - CDS 23060 - 23572 392 ## gi|282883134|ref|ZP_06291733.1| conserved hypothetical protein 21 11 Op 4 . - CDS 23573 - 24667 1204 ## COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis 22 11 Op 5 7/0.000 - CDS 24684 - 25439 853 ## COG0703 Shikimate kinase 23 11 Op 6 5/0.000 - CDS 25426 - 26502 1246 ## COG0082 Chorismate synthase 24 11 Op 7 1/0.000 - CDS 26486 - 27733 1182 ## COG0128 5-enolpyruvylshikimate-3-phosphate synthase 25 11 Op 8 . - CDS 27730 - 28455 519 ## COG0710 3-dehydroquinate dehydratase 26 11 Op 9 . - CDS 28452 - 28943 565 ## COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 - Prom 29026 - 29085 7.5 27 12 Tu 1 . - CDS 29101 - 30603 1227 ## COG1757 Na+/H+ antiporter - Prom 30623 - 30682 8.3 - Term 30687 - 30715 1.0 28 13 Op 1 . - CDS 30730 - 31344 527 ## PROTEIN SUPPORTED gi|15900660|ref|NP_345264.1| superoxide dismutase, manganese-dependent 29 13 Op 2 . - CDS 31419 - 32117 911 ## FMG_1142 hypothetical protein - Prom 32284 - 32343 7.9 30 14 Op 1 . - CDS 32403 - 32678 316 ## gi|282883181|ref|ZP_06291780.1| GCN5-related N-acetyltransferase 31 14 Op 2 44/0.000 - CDS 32726 - 33505 226 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 32 14 Op 3 44/0.000 - CDS 33498 - 34460 926 ## COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component 33 14 Op 4 49/0.000 - CDS 34462 - 35304 738 ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 34 14 Op 5 38/0.000 - CDS 35308 - 36231 297 ## PROTEIN SUPPORTED gi|167855436|ref|ZP_02478201.1| 30S ribosomal protein S21 35 14 Op 6 . - CDS 36275 - 37360 1108 ## COG0747 ABC-type dipeptide transport system, periplasmic component - Prom 37381 - 37440 2.1 36 15 Op 1 . - CDS 37494 - 37787 292 ## gi|300813247|ref|ZP_07093611.1| bacterial extracellular solute-binding protein, family 5 37 15 Op 2 . - CDS 37800 - 39056 1518 ## COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase - Prom 39109 - 39168 12.0 38 16 Tu 1 . + CDS 39169 - 40320 1208 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase 39 17 Op 1 . - CDS 40472 - 41779 1318 ## COG1114 Branched-chain amino acid permeases - Prom 41804 - 41863 10.9 40 17 Op 2 . - CDS 41875 - 42678 704 ## Gura_1273 DsbA oxidoreductase - Prom 42727 - 42786 7.8 + Prom 42773 - 42832 5.9 41 18 Op 1 12/0.000 + CDS 42858 - 44981 2734 ## COG1328 Oxygen-sensitive ribonucleoside-triphosphate reductase + Prom 44983 - 45042 3.1 42 18 Op 2 . + CDS 45155 - 45484 253 ## COG0602 Organic radical activating enzymes + Term 45540 - 45607 17.0 43 19 Op 1 . - CDS 45599 - 46693 884 ## COG2327 Uncharacterized conserved protein 44 19 Op 2 . - CDS 46690 - 48009 1298 ## COG3307 Lipid A core - O-antigen ligase and related enzymes 45 19 Op 3 . - CDS 48039 - 48578 117 ## gi|282883120|ref|ZP_06291719.1| conserved hypothetical protein 46 19 Op 4 . - CDS 48583 - 49068 670 ## gi|282883147|ref|ZP_06291746.1| hypothetical protein HMPREF0628_1377 47 19 Op 5 . - CDS 49055 - 50182 1105 ## COG0438 Glycosyltransferase - Prom 50346 - 50405 12.2 + Prom 50310 - 50369 10.9 48 20 Tu 1 . + CDS 50563 - 53766 3913 ## COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ) + Term 53814 - 53872 10.4 49 21 Tu 1 . - CDS 53796 - 53918 71 ## - Prom 54019 - 54078 6.3 - Term 54058 - 54089 3.1 50 22 Op 1 2/0.000 - CDS 54097 - 55245 1407 ## COG1775 Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB 51 22 Op 2 4/0.000 - CDS 55257 - 56582 1807 ## COG1775 Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB 52 22 Op 3 . - CDS 56596 - 57411 1184 ## COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) - Prom 57436 - 57495 11.8 - Term 57605 - 57667 8.1 53 23 Op 1 3/0.000 - CDS 57681 - 59444 2212 ## COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) 54 23 Op 2 21/0.000 - CDS 59455 - 60252 1224 ## COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit 55 23 Op 3 1/0.000 - CDS 60252 - 61220 1241 ## COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit 56 23 Op 4 . - CDS 61280 - 62416 1554 ## COG1883 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit 57 23 Op 5 . - CDS 62434 - 62853 769 ## COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit 58 23 Op 6 . - CDS 62887 - 63195 574 ## gi|282883146|ref|ZP_06291745.1| sodium pump decarboxylase, gamma subunit - Prom 63238 - 63297 9.1 59 24 Op 1 . - CDS 63538 - 63876 491 ## COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases 60 24 Op 2 . - CDS 63942 - 64100 213 ## gi|282883218|ref|ZP_06291817.1| radical SAM domain protein 61 24 Op 3 . - CDS 64097 - 64789 667 ## COG0177 Predicted EndoIII-related endonuclease 62 24 Op 4 5/0.000 - CDS 64803 - 66098 1389 ## COG0621 2-methylthioadenine synthetase 63 24 Op 5 9/0.000 - CDS 66099 - 66791 609 ## COG1385 Uncharacterized protein conserved in bacteria 64 24 Op 6 . - CDS 66784 - 67689 579 ## PROTEIN SUPPORTED gi|158320270|ref|YP_001512777.1| ribosomal protein L11 methyltransferase - Prom 67727 - 67786 13.5 - Term 68032 - 68079 7.1 65 25 Op 1 . - CDS 68113 - 68535 642 ## COG0783 DNA-binding ferritin-like protein (oxidative damage protectant) - Prom 68557 - 68616 6.5 66 25 Op 2 31/0.000 - CDS 68619 - 69746 1199 ## COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain - Prom 69767 - 69826 15.7 - Term 69766 - 69825 12.2 67 26 Op 1 29/0.000 - CDS 69837 - 71675 2554 ## COG0443 Molecular chaperone 68 26 Op 2 21/0.000 - CDS 71689 - 72291 677 ## COG0576 Molecular chaperone GrpE (heat shock protein) 69 26 Op 3 . - CDS 72291 - 73316 829 ## COG1420 Transcriptional regulator of heat shock gene - Prom 73539 - 73598 10.3 + Prom 73427 - 73486 9.4 70 27 Op 1 4/0.000 + CDS 73617 - 75428 2006 ## COG0481 Membrane GTPase LepA 71 27 Op 2 1/0.000 + CDS 75412 - 76554 819 ## COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases 72 27 Op 3 . + CDS 76588 - 77337 855 ## COG0778 Nitroreductase + Prom 77355 - 77414 9.2 73 28 Tu 1 . + CDS 77447 - 79753 2747 ## COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases + Term 79781 - 79821 3.4 + Prom 79906 - 79965 8.2 74 29 Tu 1 . + CDS 80016 - 81182 1145 ## COG0787 Alanine racemase + Term 81427 - 81461 -1.0 - Term 81107 - 81160 -0.2 75 30 Op 1 . - CDS 81243 - 81824 502 ## DSY4813 hypothetical protein 76 30 Op 2 . - CDS 81837 - 82265 924 ## COG0716 Flavodoxins - Prom 82340 - 82399 16.2 + Prom 82278 - 82337 8.8 77 31 Tu 1 . + CDS 82391 - 83017 669 ## COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain + Term 83029 - 83056 0.1 - Term 82994 - 83026 4.0 78 32 Op 1 . - CDS 83050 - 83505 618 ## DICTH_1379 transporter - Prom 83609 - 83668 7.4 79 32 Op 2 . - CDS 83705 - 84943 1317 ## COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair - Prom 85046 - 85105 13.2 - Term 85115 - 85172 11.0 80 33 Tu 1 . - CDS 85187 - 85912 601 ## COG3619 Predicted membrane protein - Prom 85971 - 86030 9.7 - Term 85974 - 86012 3.1 81 34 Tu 1 . - CDS 86033 - 87229 944 ## COG1301 Na+/H+-dicarboxylate symporters - Prom 87322 - 87381 6.8 82 35 Tu 1 . - CDS 87403 - 87915 214 ## PROTEIN SUPPORTED gi|15902812|ref|NP_358362.1| hypothetical protein spr0768 83 36 Op 1 8/0.000 - CDS 88320 - 88745 496 ## COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases 84 36 Op 2 11/0.000 - CDS 88735 - 89952 1289 ## COG0304 3-oxoacyl-(acyl-carrier-protein) synthase 85 36 Op 3 26/0.000 - CDS 89949 - 90659 251 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 86 36 Op 4 3/0.000 - CDS 90652 - 91560 824 ## COG0331 (acyl-carrier-protein) S-malonyltransferase 87 36 Op 5 . - CDS 91557 - 92573 993 ## COG2070 Dioxygenases related to 2-nitropropane dioxygenase 88 36 Op 6 . - CDS 92557 - 93489 974 ## COG2070 Dioxygenases related to 2-nitropropane dioxygenase 89 36 Op 7 . - CDS 93491 - 94387 823 ## COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III 90 36 Op 8 10/0.000 - CDS 94378 - 95265 807 ## COG0825 Acetyl-CoA carboxylase alpha subunit 91 36 Op 9 . - CDS 95255 - 95581 304 ## COG0777 Acetyl-CoA carboxylase beta subunit 92 36 Op 10 4/0.000 - CDS 95448 - 96110 287 ## COG0777 Acetyl-CoA carboxylase beta subunit 93 36 Op 11 27/0.000 - CDS 96091 - 97470 1164 ## COG0439 Biotin carboxylase 94 36 Op 12 . - CDS 97464 - 97868 334 ## COG0511 Biotin carboxyl carrier protein 95 36 Op 13 . - CDS 97861 - 98091 506 ## COG0236 Acyl carrier protein - Prom 98189 - 98248 11.5 - Term 98329 - 98366 3.7 96 37 Op 1 . - CDS 98375 - 98905 730 ## gi|282883174|ref|ZP_06291773.1| putative lipoprotein - Prom 98925 - 98984 3.3 97 37 Op 2 . - CDS 98998 - 99333 383 ## gi|282883237|ref|ZP_06291836.1| putative cyclin related protein - Prom 99431 - 99490 8.2 - Term 99501 - 99535 1.3 98 38 Op 1 17/0.000 - CDS 99549 - 100799 1186 ## COG0151 Phosphoribosylamine-glycine ligase 99 38 Op 2 10/0.000 - CDS 100807 - 102312 1788 ## COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) 100 38 Op 3 21/0.000 - CDS 102317 - 102919 663 ## COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN 101 38 Op 4 13/0.000 - CDS 102903 - 103931 816 ## PROTEIN SUPPORTED gi|169632702|ref|YP_001706438.1| phosphoribosylaminoimidazole synthetase 102 38 Op 5 . - CDS 103937 - 105214 1516 ## COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase 103 38 Op 6 4/0.000 - CDS 105218 - 105694 725 ## COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase - Prom 105754 - 105813 6.0 - Term 105702 - 105739 -0.7 104 38 Op 7 . - CDS 105824 - 106504 862 ## COG0152 Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase - Prom 106726 - 106785 13.0 + Prom 107102 - 107161 9.5 105 39 Tu 1 . + CDS 107181 - 108671 1574 ## COG0773 UDP-N-acetylmuramate-alanine ligase + Term 108701 - 108743 -0.4 - Term 108683 - 108737 1.8 106 40 Op 1 9/0.000 - CDS 108755 - 109747 1121 ## COG0533 Metal-dependent proteases with possible chaperone activity 107 40 Op 2 20/0.000 - CDS 109760 - 110197 222 ## PROTEIN SUPPORTED gi|16077660|ref|NP_388474.1| hypothetical protein BSU05930 108 40 Op 3 12/0.000 - CDS 110172 - 110831 195 ## PROTEIN SUPPORTED gi|238855674|ref|ZP_04645973.1| ribosomal protein ala-acetyltransferase 109 40 Op 4 . - CDS 110812 - 111273 425 ## COG0802 Predicted ATPase or kinase 110 40 Op 5 . - CDS 111274 - 111798 541 ## COG0778 Nitroreductase - Prom 112014 - 112073 9.0 + Prom 111806 - 111865 13.6 111 41 Op 1 . + CDS 111888 - 112466 638 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins 112 41 Op 2 . + CDS 112469 - 113593 993 ## TDE1481 hypothetical protein + Term 113598 - 113654 2.3 - Term 113587 - 113640 9.2 113 42 Op 1 . - CDS 113643 - 113981 609 ## gi|282883138|ref|ZP_06291737.1| conserved hypothetical protein 114 42 Op 2 . - CDS 113997 - 114554 742 ## COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) 115 42 Op 3 . - CDS 114614 - 115549 669 ## gi|282883169|ref|ZP_06291768.1| hypothetical protein HMPREF0628_1445 116 42 Op 4 . - CDS 115546 - 116085 410 ## gi|282883136|ref|ZP_06291735.1| prokaryotic N-methylation domain protein 117 42 Op 5 . - CDS 116027 - 116419 368 ## gi|282883189|ref|ZP_06291788.1| conserved hypothetical protein 118 42 Op 6 . - CDS 116388 - 116849 459 ## gi|282883109|ref|ZP_06291708.1| prokaryotic N-methylation domain protein 119 42 Op 7 . - CDS 116821 - 117990 1048 ## gi|282883170|ref|ZP_06291769.1| hypothetical protein HMPREF0628_1449 120 42 Op 8 . - CDS 117992 - 118546 605 ## gi|282883206|ref|ZP_06291805.1| putative esterase 121 42 Op 9 . - CDS 118543 - 119235 569 ## gi|282883121|ref|ZP_06291720.1| hypothetical protein HMPREF0628_1451 122 42 Op 10 4/0.000 - CDS 119232 - 119966 546 ## COG2003 DNA repair proteins 123 42 Op 11 1/0.000 - CDS 119929 - 120522 602 ## COG0424 Nucleotide-binding protein implicated in inhibition of septum formation 124 42 Op 12 . - CDS 120523 - 121032 294 ## COG4769 Predicted membrane protein 125 42 Op 13 . - CDS 121029 - 121409 503 ## CPE2225 hypothetical protein - Prom 121430 - 121489 9.3 - Term 121457 - 121491 1.0 126 42 Op 14 . - CDS 121492 - 121761 255 ## PROTEIN SUPPORTED gi|227486716|ref|ZP_03917032.1| 30S ribosomal protein S20 - Prom 121793 - 121852 9.4 127 43 Op 1 4/0.000 - CDS 121879 - 122889 722 ## COG1466 DNA polymerase III, delta subunit 128 43 Op 2 . - CDS 122867 - 125068 1344 ## COG2333 Predicted hydrolase (metallo-beta-lactamase superfamily) - Prom 125138 - 125197 9.1 + Prom 124946 - 125005 13.8 129 44 Op 1 . + CDS 125171 - 125893 720 ## RRC497 alanyl-tRNA synthetase-related protein 130 44 Op 2 . + CDS 125937 - 127280 1603 ## COG3579 Aminopeptidase C + Term 127287 - 127327 4.9 131 45 Op 1 . + CDS 127334 - 128323 1014 ## COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases 132 45 Op 2 . + CDS 128320 - 129222 635 ## Apre_1219 hypothetical protein + Term 129240 - 129282 3.3 + Prom 129262 - 129321 6.4 133 46 Tu 1 . + CDS 129352 - 129753 448 ## Thebr_1802 transposase IS204/IS1001/IS1096/IS1165 family protein + Term 129867 - 129904 0.1 - Term 130091 - 130142 6.9 134 47 Op 1 . - CDS 130144 - 132480 2811 ## Bsph_1896 Ig-like, group 2 135 47 Op 2 . - CDS 132488 - 133249 898 ## HMPREF0424_0540 hypothetical protein - Prom 133382 - 133441 10.3 - Term 133354 - 133393 -0.5 136 48 Op 1 1/0.000 - CDS 133546 - 133905 360 ## COG0792 Predicted endonuclease distantly related to archaeal Holliday junction resolvase 137 48 Op 2 8/0.000 - CDS 133899 - 134516 606 ## COG0164 Ribonuclease HII 138 48 Op 3 . - CDS 134513 - 135346 789 ## COG1161 Predicted GTPases 139 48 Op 4 . - CDS 135351 - 136169 919 ## COG0561 Predicted hydrolases of the HAD superfamily 140 48 Op 5 . - CDS 136190 - 137284 1490 ## COG0012 Predicted GTPase, probable translation factor - Prom 137359 - 137418 12.9 + Prom 137315 - 137374 11.4 141 49 Op 1 24/0.000 + CDS 137556 - 138773 1253 ## COG1131 ABC-type multidrug transport system, ATPase component 142 49 Op 2 . + CDS 138770 - 139609 842 ## COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component + Term 139625 - 139664 5.1 Predicted protein(s) >gi|281296914|gb|ADDO01000063.1| GENE 1 65 - 628 538 187 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282883144|ref|ZP_06291743.1| ## NR: gi|282883144|ref|ZP_06291743.1| putative transcriptional regulator, LuxR family [Peptoniphilus lacrimalis 315-B] putative transcriptional regulator, LuxR family [Peptoniphilus lacrimalis 315-B] # 1 187 1 187 187 246 100.0 4e-64 MKKTIILNIKKDIFRKGLTKILEDKYIVKTKNEEKADLIISSGKINDKSLSKVIYVREKE DTIISKSYSQITYDITENELLECIDKNMQGLIYIEKSLESKINRELEIEILYRELSSRDK TLIEKIVEEKTNIEIGRELYLSEKTVKNCLTVLYKRLELKNRNEIKKTFKNLLTRDLNDV NIYKSQE >gi|281296914|gb|ADDO01000063.1| GENE 2 625 - 1638 986 337 aa, chain - ## HITS:1 COG:CAC3037 KEGG:ns NR:ns ## COG: CAC3037 COG1609 # Protein_GI_number: 15896288 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Clostridium acetobutylicum # 1 334 1 334 334 199 37.0 4e-51 MTSTIKDVAKMADVSISTVSRVINDSKPVSPEARRRVLHAIDVLDYKPNEVARSLVTKKS NLIGVIVEDIGLNFISRILQGVEEVGKMYNYDILLSSSYKDLKTEVKFANLLLQKQVEGI IVVSNMQNPKLEYKLEEAKIPHVLINNFYQVEKFQASIDFEKASKNMVELLMKKGHKKIA SLAVKKDIDRTLERFKVKGYEKAMEEHNLKKVQLFVDGWQSENIEKEKENIIKTIKEENI TAIFTTYDTLAINLINVLYDNGIKVPEDVSVTGFGGGYLSSIYRPRLTTVKMPYYDIGAI SIRQILKTISNKEKEIKGEGVLLPIRILERESVKEIK >gi|281296914|gb|ADDO01000063.1| GENE 3 1653 - 2546 947 297 aa, chain - ## HITS:1 COG:BH0676 KEGG:ns NR:ns ## COG: BH0676 COG1597 # Protein_GI_number: 15613239 # Func_class: I Lipid transport and metabolism; R General function prediction only # Function: Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase # Organism: Bacillus halodurans # 1 295 1 291 295 180 34.0 3e-45 MKKIKIIANPNAGRESALTKVLQLVKLLSKDKYQIILQFTHEEKDSTKFAMNDDGEDLVV CCGGDGTVNGVVNGLYRSKRRKPLAILQCGTVNDFANSIKLPTNINSFYKMIKNGKTLDV DLGQANDRVFVNVAAGGLLTEIAYTTSEDKKQVLGSMAYYIDGAKELLKGEMFKPENLLN IKIKSEDLEKEEKVSVFIIANSPSVGGFKRMAPAAEVSDGYLDVIFIKGMEFFDIPEFVR ALLNGNHVDHNKVIYLKTKDIEITSDKDVVVDLDGERAGRLPMRFKILEKALTVLIV >gi|281296914|gb|ADDO01000063.1| GENE 4 2679 - 3170 728 163 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|300814468|ref|ZP_07094730.1| ## NR: gi|300814468|ref|ZP_07094730.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 836 str. F0141] conserved hypothetical protein [Peptoniphilus sp. oral taxon 836 str. F0141] # 1 163 1 163 163 231 99.0 1e-59 MNQAFTLSDLLTFFLSVAGILVLVALFLTLLKVFKILKSVSEVLEKNREEIDTTISSLPE VMENVNGITKNVNKITDDATELVDNSKPEIAKVMGAVGNVSDTVNGIARKVDTTSLKVTN TVNNVSDVVSDTAKTVSLNVDNVIDYFYIFKEIVATLKDVLLK >gi|281296914|gb|ADDO01000063.1| GENE 5 3180 - 3740 911 186 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282883203|ref|ZP_06291802.1| ## NR: gi|282883203|ref|ZP_06291802.1| putative general stress protein [Peptoniphilus lacrimalis 315-B] putative general stress protein [Peptoniphilus lacrimalis 315-B] # 1 186 1 186 186 193 100.0 4e-48 MGLFDYLEEKKRQAVRRRQLKEASKILTGAALGILGGILFAPQEGKKTREDIANKSKDLA DSAVNVAKDTADTIQFKAYQASDQVKKTYADLKDNIAIKKDQLDDNVEVAKAKAKAIGEI VKSGASELKEDVKNTTKEVKKTAEDVKEDVKEGAKNIKEEAEKSKDKAKETVKETKDKVE KEANKK >gi|281296914|gb|ADDO01000063.1| GENE 6 4032 - 4934 289 300 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit [Lactobacillus helveticus DPC 4571] # 33 291 32 281 285 115 37 9e-25 MEKLNPYEFLEFIVTDEKIKSRKFLEKMDISSRHIRRACRENSIYVNGKRTFENVEVKKG DSVAIRFPDESLNALCQYKDIDICYEDYDLLIVNKEYNCVTHTAKDDSKDTLLNYLAGYF EKNNIKRKVRFVNRLDRDTSGLIIVAKNSYAHAKIMDEFSNNQVDKIYLAICRGDFKEKQ GEIVKKISLCQDGIRREVDDDNGKYAKTKYQVLKDNKKLALVKLKLFTGRTHQIRVHLKS IGHPIIGDKLYNDSNEEQNLMNRQALHSYSLSFKLPRTGELKTFTAKLSDDMDMLNHEIS >gi|281296914|gb|ADDO01000063.1| GENE 7 5016 - 5819 490 267 aa, chain + ## HITS:1 COG:SPy1126 KEGG:ns NR:ns ## COG: SPy1126 COG0061 # Protein_GI_number: 15675106 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted sugar kinase # Organism: Streptococcus pyogenes M1 GAS # 6 267 13 273 278 150 33.0 3e-36 MTEGIISIITNANYHSKRIAQKLYNSLSIRGFKPFYGFRNDASLCICVGGDGSFLKAVHR NNFPKIAFVGINTGHLGFYQEILPEDIDSFLDAYEEKNYKETTIKLLKAEIFTKNKTYVQ YGINEMVLKASHSKLIHMNVFIDRNHLEKFSGDGLLISTPSGSTAYNFSSGGSIVHPSLD VLQMTPISPVNSAAYRSLASSIIVPGSHSLSLVVEKRYANANLLLIDGVENFYANLQRVN FSLSDKCITKLLFSENSYWEKLKDKFL >gi|281296914|gb|ADDO01000063.1| GENE 8 5855 - 6928 1062 357 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282883215|ref|ZP_06291814.1| ## NR: gi|282883215|ref|ZP_06291814.1| hypothetical protein HMPREF0628_1341 [Peptoniphilus lacrimalis 315-B] hypothetical protein HMPREF0628_1341 [Peptoniphilus lacrimalis 315-B] # 1 357 1 357 357 592 100.0 1e-167 MNKKEIYELLNEVNTVYKEQKLTDEENIKLERKIKEKIHSNKKFNFRKVGAIAAGLFILG SFVFASNEKIHAYVEEFFTDKKISLSDAGDLSKDIEANVVELHKPINFKKASFMIENILT DGRFIYLNLIYPQKYENEIYIPRFLKINGVEYCPESTSVKPDKIENNLISTYSEILLDKE IPSNVDLDIILGYDNFDDSSDRNYIEVKVPKEKSQINQRVFLENYYIDKDKKYRILKAKI NKVKAIIEIDQPIIKIWGNKKTVDYYVKGKNSKGQTLIFDLNLGKSVGGLYKCIYEFSDK NCKGTPYKSDISLADLYNSKDIFKMNLIRVEGKREKGKIINKKEKIIGKTFDLDLSK >gi|281296914|gb|ADDO01000063.1| GENE 9 6933 - 7442 377 169 aa, chain - ## HITS:1 COG:CAC1766 KEGG:ns NR:ns ## COG: CAC1766 COG1595 # Protein_GI_number: 15895043 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog # Organism: Clostridium acetobutylicum # 3 164 5 176 185 60 26.0 2e-09 MNEKEIIRGLKRKDERILSAFIEEYAGLMKNVISDRLKVFPNIREEVLNDSIFAVWENIN SYNEKKSSFKNWCASIARYKAIDALRKELRHKSCELDENLHIKDDRILNLLLIEEIFNYL SAEDKMIFEKIFLEGRTYDELSNELSVSKDILYSRVKRARKNLKDEFER >gi|281296914|gb|ADDO01000063.1| GENE 10 7522 - 7758 259 78 aa, chain - ## HITS:1 COG:TM1156 KEGG:ns NR:ns ## COG: TM1156 COG1983 # Protein_GI_number: 15643913 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Putative stress-responsive transcriptional regulator # Organism: Thermotoga maritima # 1 57 3 59 129 63 49.0 1e-10 MKKLYRSRDNKVLAGICGGLAEYFEVDASFVRLVTLALVLLGGVSIWIYIIAIFLIPLEP DNYHKGYYDEDNNDKDFY >gi|281296914|gb|ADDO01000063.1| GENE 11 7891 - 11316 4117 1141 aa, chain - ## HITS:1 COG:CAC2660 KEGG:ns NR:ns ## COG: CAC2660 COG1038 # Protein_GI_number: 15895918 # Func_class: C Energy production and conversion # Function: Pyruvate carboxylase # Organism: Clostridium acetobutylicum # 1 1141 2 1144 1144 1542 66.0 0 MKKFKRVMVANRGEIAIRVFRALRELGIRSVAIYSKEDQLSLFRTKADESYLIGKDKSPL GAYLDIDEIIKLAKAKAVDAIHPGYGFLAENAEFAAKCEKEGITFIGPSSSAMEALGDKI KSKIVANNAKVPTIPGIQKPIENDEQAKDFAKEAGYPVIIKASFGGGGRGMRVVNNEKEL IEKLHSAKSEAKQAFGNDAIFIEKYLEKPKHIEVQILGDKFGNIVHLFERDCSIQRRHQK VIEFTPAFSLPKNVRESICQDALKIANSIGYTNAGTVEFLVDKNLNHYFIEVNPRIQVEH TVTEMCTDIDLVQSQILVAQGYPLNSKEIGIESQESIKHTGFAIQCRVTTEDPLNNFMPD TGHISLYRSSSGYGVRLDGGNGFTGAVISPYYDSLLVKVITHARTWSDTIRKAVRSLSEL KVGGVKTNIGFLLNVLNTDEFLKGTCDTGFIEEHPELFQIKTKKDKELQLMKLIGNIVVN DPNKIQKHFDVPQVPKFERKSFRGTKQILDEEGPDGLVKWIKSQKKLLLTDTTMRDAHQS LMATRVRTIDLVKIAEATNYNMPDLFSIEMWGGATFDVAYRFLHEDPWQRLEILREKMPN MLLQMLVRGNNTVGYKNYPDNVVKSFIKESAKAGIDVFRIFDALNWLPGMQLSIEETLKN GKIAEATMCYTGDILDETKDKYNLAYYVNLAKELENTGAQILGIKDMSGLLKPYAAKKLI KALKNEIGIPVHLHTHDTTGNGVATILMAAEAGVDIADTAVDSMSGLTSQAALNSVVAAL ENTDRDTGMNIEKVEEISKYWEAVRPVYANFESDLKSGTTEIYRYEIPGGQYSNLKPQVE SFGLGHKFKEVKEMYKEVNQMVGDIIKVTPSSKMVGDMAIFMVQNGLTKDNIYEKGKNLD YPDSVRTYFKGMMGQPYGKFPKELQKLVLKGEKPITVRPGELLADEDFQAVKKHLEEKGM EASDRNAVSYTLYPKVIDDYIDYVKENGDVSGIGSDVFFHGLMEGETAEISIGEGKNLIV TLIEVGKLLDDGTRNLTFEINGNRRTINLEDKTATVTSKARSQTLFADKNNEKEVGSSIP GQIVKINVKVGDKVKAGDTLFIAEAMKMEANVVANIDGTVKEIFVEVNDAVENGQLLLTF E >gi|281296914|gb|ADDO01000063.1| GENE 12 11688 - 12077 383 129 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227996986|ref|ZP_04044000.1| SSU ribosomal protein S9P [Kangiella koreensis DSM 16069] # 1 129 1 129 129 152 59 1e-35 MQTQYRATGRRKTSIAQVRLLAGSGNFTINGRDINDYFDYETLREVSKSPLELTDTLASF DVIVKVKGGGFTGQAGAVRHGVARALLEVDPEYRSVLKKAGFLTRDPRMKERKKYGLKKA RRAPQFSKR >gi|281296914|gb|ADDO01000063.1| GENE 13 12091 - 12519 529 142 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|114567806|ref|YP_754960.1| 50S ribosomal protein L13 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] # 1 142 1 142 144 208 69 1e-52 MKSYMAKANEVERKWYIIDAEDKVLGRLATEVASILKGKKKPIYTPHVDTGDFVIIINAE KIKLTGNKWDQKLHIYHTGYPGGRREVSYQQLREKRPEKIIELAVKGMLPKSRLGRKMFK KLKVYSGAQHPHAAQMPEVYEI >gi|281296914|gb|ADDO01000063.1| GENE 14 12722 - 19660 7140 2312 aa, chain - ## HITS:1 COG:BS_bpr_1 KEGG:ns NR:ns ## COG: BS_bpr_1 COG1404 # Protein_GI_number: 16078594 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Subtilisin-like serine proteases # Organism: Bacillus subtilis # 81 495 101 525 535 293 41.0 3e-78 MKKLNKILAIILFTAILFTDFIPVLAISKSSEDISKKLSENLIRSKNDEFFDVIVKLKKE VNSQRIKNDVKNANAEKSKEELQKEIRKEIVNESKELAKSTQASILEILKNEKNKGNVKS YESFFIINCVNLVARKSVIVELAKRDDVEKIIENKVIKVEKPEKNEIIRMSRSAYDIHIP WNLEAINAYKAQRYTKDCNNEVVVGIIDSGVDSTHSAISKNYRGNDSSLAAYSWYNTITG KDGSQEKPYDDRGHGTHVCGTILGSKENALLGVAPKAKWIGVKVFDQDGETNNVKLLKAG EWIMAPNGDPTKAPKVVNNSWGGNSNDGFFQEIVKKWREAGIFPVFSAGNVGPFNDGGDD SIGTPGAYPESYAVGAIRKDEHIAKFSLRGKSTYTNKIKPDIVAPGVNILSCIPGEKYTI YTGTSMAAPHVTGVIALMLQVNPNLTVDQIENILNETALPLKDEYYTTTPNNGYGYGKVN AVSAVQLAKGQEKGKDIKKDNIAILSGRLLAHGQDTQAPVISHNPINKIFTTYKTTFDVD AKDNTGVKSVKLLLDLGNGYKSYDLELKRGNKVDGYYSTNIPVETFKGVSEGKYYIEVID INDKVTKTPVYPFEVQKGIGIGYVNNFESDISGFDFGGEAKLFKWGKIKSDEANNKVIGI EPYDKIRGNSIVVMPPIDLTGENRKAALTFKHWYDLGNSEYAFFDTAEVWIAEAKEDSTP DTLQWKLKRTYKNSSKGWTNEYIDLSEYFGKKICIMFGFRPNGEWKSEGKGWYIDDLKVE EVSKEVPEKPSKSLNLRNKKDGRIIYSFLPIKNDKVTAYELYRSKSENSGFECIKTVLKG DKNNGFGKYSIDLSDTPKPQKGTYYYYAVAKIGDNKSEPSETKSVTFTEGKEFKSFDFEN GEEGWTSSINGDEKSLWEFGNLKYGDQYSTEYKKPIERQSLGKNDGMKMWATNMNDYRSP NTKYALVSPSMDLSSLSDGTLYYQNWFGSSGKRYSDDYDTYNQDIGEIYLSKDAGKTWKK FYTLDEKNLEKDGIIHAWFTNKVEIPKDYLVKDFKVKFLLETGSDTGSSDSAQSGGWYID DVTINSKNLEDKNIVIDKNPAPFKLTNLERPASENKSVLPLSGKIIIAEQNSLAKVIATV QTEPGTGAFSIKLPVGDYLIVGSADGYKNSKHDYITLKKDGLNKDIYLEKAGGASVTVNL KDYNYDEFKGLGKVTLYKKGEIAPIAEKKGVNVTFENLYPGDYIYIVNSDGFKKIEQEFA LDGHSRPFNARLHEKLFPQKESSVGYTDETPLELAGMDLKNRAFANKITNDKIAQIKEIS YFITKTKDVDLKGSKYRISIYDKNDDDELPGKILFSKDLTFEKEGWNKIDVSNVQVWGDY YIAFTKLDGNLALGIDNKKENTMSYQMFNDAWDVPDTKGTYMLGAKVEECSDKENKEKCT ISFDSNGGSGKMESIEVDKKSNYIVPECIFTAPEGKEFRAWQVYTKEIQAGESQYVFENV TFKALWKDKKTENKEKLEPVMPFPMMGQTNVTNFDHFITYKNETESDEYLKSIEKVIVKH KGKTQEITGAKGIDSTDPLGNANKKLAFPFESKLDIDDTITIISSKYKNVLIKISLVTEF GNDIYYNISANVEGQKIVRTIHFDANGGTNNMKDVEVENGSIYSLPECTITPPKGYEFKA WEYLDVESEVGHKYQINKDVTIKAIWKKIPTKNITIHYDSNAGEGEMPDESKLENEKFII PESRFTPPQGKEFDAWEINDQRKYPGEELVLSENITLKAIWTQKLEKTKDPIEPILTEVK SDDPSNKKANCKHFIGYKKEDREYIDAINLITIKHNGEIIKKYHITKEDGKYEVLDGIGK TKKDMTSIVFNSNFFFSRDDEIIICARGYKDLRLHIAAADDMVMNALYTTEIISKVKFET FDGSKVDDQVIKVTPTWAENVKKPKTDPTKEGYIFKGWYKDSACKENFDFNSKIISDTSI YAKWEKEIKKFTISFIGNGGTGEMNTIEKDKDQKYILPISTFIPAEGKEFDAWEINGQRK SPGEEITINSDTQIKAIWKDKILPPGPKVEPEIELKPSPEIKHENNDSGNNNKNHYFPWS NESKVQKDTSKVNSIVNSSEENNKFMENTKTAYTIPKDAQKHWAKEAIEYCLSKGYFKDI VKDQKFEPEKQITRGEFITILARFAGAKESNTKISFTDIDKNMYYAPFVAWAKENNITAG TGIGKFSPDKPISRAEMTTMLYRFLKSIKINVKSLDKNIDFKDKDKIPSWAKEAIKEMVD FGILNGNDDGTFNPNGKFKRCQMSQIIYNLSK >gi|281296914|gb|ADDO01000063.1| GENE 15 19932 - 21449 1727 505 aa, chain - ## HITS:1 COG:CAC3230 KEGG:ns NR:ns ## COG: CAC3230 COG4624 # Protein_GI_number: 15896476 # Func_class: R General function prediction only # Function: Iron only hydrogenase large subunit, C-terminal domain # Organism: Clostridium acetobutylicum # 156 501 83 429 450 159 33.0 2e-38 MKEIYGPIVDIRRRVYAEVARIAFGDYDMSELEDSSYRIVPGEVGRDRGDIFRERAIAEE MVRLAMGMDIRQIGEYKKVTDGFDQVDIDTNAYKKPLINVIKFACEACPTKSYFVTNNCR KCIAHPCINVCPVNAISMGKDSTIIDKDKCIRCGRCHEACPYNAIVMYDRPCAAVCGVKA IGSDDFDRADIDQDKCVACGRCIATCPFGAISDKTQIFQLIKAIKSGKRIYGAIAPSYIG QFGPKAKPMQILEGIKQLGFKDVIEVALGADITTLHEAKEYLERVPDKIPFMGTSCCYSW SLMIKKNFPEIYEQVSDSGSPMRYTANYIKKIDPEAVVVFIGPCTSKKLEALDTKVKSDV DFVVTFEEVMGMLAAKDIDVSSIEVEKEEEESSALGRGYPIAGGVAQSVKVTAEILDPEK EINIQGANSLDECIKMLKIAKAGKLNGYLLEGMACPGGCIAGVGTIAALGKVKRSVEKYM KEAQFKTPLENTKIESEKTKIIEEK >gi|281296914|gb|ADDO01000063.1| GENE 16 21471 - 21746 367 91 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282883178|ref|ZP_06291777.1| ## NR: gi|282883178|ref|ZP_06291777.1| putative NADH-quinone oxidoreductase chain f [Peptoniphilus lacrimalis 315-B] hypothetical protein HMPREF9131_1055 [Peptoniphilus sp. oral taxon 836 str. F0141] putative NADH-quinone oxidoreductase chain f [Peptoniphilus lacrimalis 315-B] hypothetical protein HMPREF9131_1055 [Peptoniphilus sp. oral taxon 836 str. F0141] # 1 91 1 91 91 157 100.0 3e-37 MKVTICMCSKCTLMGANAIFDAVEYLHESLCAPGSEFCNAQNLEFEASDSLGICKENTDS EISPVVAIDDTIYTNATAQEISEIIVNKLKI >gi|281296914|gb|ADDO01000063.1| GENE 17 21866 - 21979 88 37 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFFIKRKKFSQIPINQNLKALPIRLRKFIELKYMAKY >gi|281296914|gb|ADDO01000063.1| GENE 18 22036 - 22539 542 167 aa, chain - ## HITS:1 COG:BS_ypjQ KEGG:ns NR:ns ## COG: BS_ypjQ COG1267 # Protein_GI_number: 16079242 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylglycerophosphatase A and related proteins # Organism: Bacillus subtilis # 1 160 1 158 177 165 61.0 3e-41 MYKYNMEELFEMAVKKLEEIGVSLDDIAEIVLMLQREYLPSLTHEYALENLKMVLHKREV IHAVLTGLAIDKMATEKLLPEPIQSIISVDEGLYGIDEVLPLGIVNCYGSIGFTNFGYLD KKKIGIIKYLDEMKSKDIVTTFADDIVAALAAATASRIAHKNIYDGK >gi|281296914|gb|ADDO01000063.1| GENE 19 22543 - 23070 358 175 aa, chain - ## HITS:1 COG:SA1160 KEGG:ns NR:ns ## COG: SA1160 COG1525 # Protein_GI_number: 15926905 # Func_class: L Replication, recombination and repair # Function: Micrococcal nuclease (thermonuclease) homologs # Organism: Staphylococcus aureus N315 # 26 163 44 175 177 76 35.0 3e-14 MKDKLKYIFLTIFILLFLYFYKSTSSGFDKVYISKVIDGDTIRATSSDDSNFKVRLIGIN APEKGKEKYWKESKSYAQKLMENKYCYLEKDTSNKDKYGRYLRYVWLKTPKKKNFKNIEE LNVSAIMLKKGLARTYTFEPDVLYLKEFKKIEKKARKFKRGFWIYKKPVTRGNKR >gi|281296914|gb|ADDO01000063.1| GENE 20 23060 - 23572 392 170 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282883134|ref|ZP_06291733.1| ## NR: gi|282883134|ref|ZP_06291733.1| conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] # 1 170 1 170 170 220 100.0 3e-56 MRNNTRGLIIHIFVGIIIFFIAYIINLSKIVSSIVYGNLIFRLIICLIPIILYYNFSKIM TKKRTPKLDYLNGNLIILLAIILFVPAFLASGFDIFKESVASNAFKFPFEIFLTPQIYVI KVLNIPYNLLTVAISTLAPTFIYGLSIRISREKISKRQRYMRNTRKRYER >gi|281296914|gb|ADDO01000063.1| GENE 21 23573 - 24667 1204 364 aa, chain - ## HITS:1 COG:SPy1138 KEGG:ns NR:ns ## COG: SPy1138 COG1477 # Protein_GI_number: 15675115 # Func_class: H Coenzyme transport and metabolism # Function: Membrane-associated lipoprotein involved in thiamine biosynthesis # Organism: Streptococcus pyogenes M1 GAS # 46 339 12 285 312 131 33.0 2e-30 MKKFIILIIFILLFTSCSKKDLAPSQEKEASSIEKYELTFYDTFDTVISAVIYSDNEKKA NEDLNYLAKRFRELNALFDRYKSYDGVINVKTINDNAGKKPVKVDDTLFKLIKTSKEDYI KISSKNNIAMGPIIDVWKAYSDKYIEGKTKEEVKKLMGNYLPDQKYLETLRKDTDINKII LDENNKTVYLEDPHMSLDLGSVAKGYATEIVGEELRTRGVKSALISAGGNVKLIGKPLDG RDKFSIGIQNPDLNAENQVFATLEASDISIVTSGDYQRFFDLDGKRYPHIIDPVTLKPSD NLKSTTVILKDSGLCDFISTAAFLSDEKDISKLAEKTDSKIIWIDNQMNIKYTPGAEKYI VKGD >gi|281296914|gb|ADDO01000063.1| GENE 22 24684 - 25439 853 251 aa, chain - ## HITS:1 COG:CAC0898 KEGG:ns NR:ns ## COG: CAC0898 COG0703 # Protein_GI_number: 15894185 # Func_class: E Amino acid transport and metabolism # Function: Shikimate kinase # Organism: Clostridium acetobutylicum # 86 224 2 146 165 82 38.0 9e-16 MKEFREKIDLIDEKILDLLIERFDLSIKIGSYKKINKLEIENLKREDEIAKSFPDLYKKN IENIYREIFKNSKHMQEKLFLYLDKNIVLIGMPGCGKTTLGEILSKKLKRDFFDTDKEFE NLYGSPEEFIIREGLSKFRDIESEILRKFSKNKYGVISTGGGIVERKENLEILKDNSVIY YIDRDTDKLTLSGIQPLYKKDLYKLREKRENLYREFSDEIIKNNTVPQDAVGKLIESFNN DILVKARAGVL >gi|281296914|gb|ADDO01000063.1| GENE 23 25426 - 26502 1246 358 aa, chain - ## HITS:1 COG:CAC0896 KEGG:ns NR:ns ## COG: CAC0896 COG0082 # Protein_GI_number: 15894183 # Func_class: E Amino acid transport and metabolism # Function: Chorismate synthase # Organism: Clostridium acetobutylicum # 3 353 4 356 356 297 46.0 3e-80 MSVIGKNLKFTIFGESHGKCIGGVLDNIKPGLLINLEDLESFMDRRRAKGEFKSKRHESD KVIFLSGFSENKTMGTPLAFIIENKNQNSSDYDNLINTPRPSHADFVANIKYKGHADLRG GGHFSGRLTAPICVGGFFSLQELKEDYGVEIYSHLSSVGNICDISYRDISTCDFKNLMKK DIPMADDKKIEQVKIFLQRLMSQEDSIGSTVTCVVKGLKAGYGSNLFDNTRAKISSYIFS IPGTCGIEFGSGFDASISKGSENNDSFYYDDGQIKTKTNNCGGIQGGITNGMDIVFKIHF KAPASIGKKQKTVNLISKKNEEIVIKGRHDPCIGLRALPVVESMAGLCVLDMIKSERI >gi|281296914|gb|ADDO01000063.1| GENE 24 26486 - 27733 1182 415 aa, chain - ## HITS:1 COG:CAC0895 KEGG:ns NR:ns ## COG: CAC0895 COG0128 # Protein_GI_number: 15894182 # Func_class: E Amino acid transport and metabolism # Function: 5-enolpyruvylshikimate-3-phosphate synthase # Organism: Clostridium acetobutylicum # 3 410 4 420 428 254 40.0 2e-67 MKVKIKPGKLEGDIDAISSKSQGHRDLILGALCEEKTEIFLNNFSDDILVTVKALENLGF VIERKENSFLIKDRVDVKNPQIDFKDSGSSLRFLLAIGNFYGENVKYIGSESLSKRPLKE LIEELEKNNFSFSQNHLPLEARGYFKGGKFTFRGDISSQYISGILLAASKSPFESQIILK SNLESKPYVDLTINELKKFCIDVKKMENSYKIKGGNLKSPGKLYVEGDWSNASVFIGANL LGSKVKIRGLNIDSLQGDKEILTIAKKFGSKIFTEDNILENSKADIRSMEIDIKNIPDLA PVLCVILAASTEKSRLINAKRLRFKESDRLFSLCKMINDLGADGKIVGDSLEITGKIKGG HVNSFNDHRIVMAACLASTFAKEEIIIDGAQAVEKSYKNFFEDFKKLGGNFVCYR >gi|281296914|gb|ADDO01000063.1| GENE 25 27730 - 28455 519 241 aa, chain - ## HITS:1 COG:lin0494 KEGG:ns NR:ns ## COG: lin0494 COG0710 # Protein_GI_number: 16799569 # Func_class: E Amino acid transport and metabolism # Function: 3-dehydroquinate dehydratase # Organism: Listeria innocua # 9 238 17 246 252 109 29.0 4e-24 MNIKKSNFQIILPIVGRDDAEILKECQNLSKLKVNTIEWRADCYNNYKDINRTLEISKRI KEILSDKDLIFTLRSKGQGGNGIFKQSFQETLIKNLLDNDIFSIYDIEFNNSKDFLKDMN NLIRDYNKLSLLSLHNFENTPDFMNIINTLEDMDKLNFNIIKYISWSNSYEDSLRLLNAT NEFSKKTDKRLIIMAMGDFGKMTRILSPLFGSFYTFSYYSKNSAEGQISYENMLKIYEEI L >gi|281296914|gb|ADDO01000063.1| GENE 26 28452 - 28943 565 163 aa, chain - ## HITS:1 COG:FN1951 KEGG:ns NR:ns ## COG: FN1951 COG2110 # Protein_GI_number: 19705253 # Func_class: R General function prediction only # Function: Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 # Organism: Fusobacterium nucleatum # 14 157 18 162 175 137 54.0 1e-32 MSLNIKLENLVKMDVDAIVNAANKELLPGGGVCGAIFQVAKSKSLEMDCKKLGPIKTGQA VITSAYNLPSKYIIHAVGPIYRDGLSGEEELLRNAYLNSLKLAKKHSIKSIAFPLISAGI YAYPLKEACKIAVDTIREFLKNEDMDVTIAVLDPNIYDILTKL >gi|281296914|gb|ADDO01000063.1| GENE 27 29101 - 30603 1227 500 aa, chain - ## HITS:1 COG:VC1131 KEGG:ns NR:ns ## COG: VC1131 COG1757 # Protein_GI_number: 15641144 # Func_class: C Energy production and conversion # Function: Na+/H+ antiporter # Organism: Vibrio cholerae # 6 465 11 497 533 296 39.0 8e-80 MNYGILTILPPIIAIILALLTKEVITSLLLGILAGGLIFTGGNFIAAIEEVLTLMSQKLG DNSLMIMFLALLGSLVMVMNMAGGSFAYGKWASKKIKSKTSAKLSSVILGILIFIDDYFN CLTVGAVMKPIIDENKVSRAKLAQIIDSTAAPICIMAPISSWAASVVAIIGEAGIENPMK VFLSTIPLNAYALLTIFSIIYFCFSKDEIGVMQKYEIKDTSRIIEKEDVGYVHSKDGKVY DLVLPILCLISITLIMMLKTGGFFQGKSAPAAFGNANVNLSLVVGSVSGLFLAFIMYIPR KLLSFNQFMSGIVEGMKSMISAIVILTLAWTIGGITSSDYLNTGGFIASKISDSQMPMWI LPAIIFIVAAFLSFSTGTAWGTFGILVPIIVPILIETDAMDYLVIILAAIFSGSVFGDHC SPISDTTILSSAGAGCDHIAHVSSQLPYAIICGISSVFGFLVAGITDIGYTAVPAGIVML LIIVFFYKKKTIKKYGQIEG >gi|281296914|gb|ADDO01000063.1| GENE 28 30730 - 31344 527 204 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15900660|ref|NP_345264.1| superoxide dismutase, manganese-dependent [Streptococcus pneumoniae TIGR4] # 1 204 1 201 201 207 49 2e-52 MVFKLEDLKYDYNALEETIDEETMRIHHDRHHKTYVDNLNKAVNGTNLDKESLDDLEEIL RNLDEIPENIKTAIINNGGGHYNHSLFWETMTPGGSKEPVGNLKKAIEKAFGSFEKFKEE FEAKGAGRFGSGWVNLVAKNGKVEIMTNPNQDSPVSSGYSLIIGNDVWEHAYYLRYQNKR ADYLKAWWNVVNWDIAEERFNKAK >gi|281296914|gb|ADDO01000063.1| GENE 29 31419 - 32117 911 232 aa, chain - ## HITS:1 COG:no KEGG:FMG_1142 NR:ns ## KEGG: FMG_1142 # Name: not_defined # Def: hypothetical protein # Organism: F.magna # Pathway: not_defined # 9 231 4 226 229 266 58.0 7e-70 MEQSNKKDKLIPKIETNLRKRQVLIPEVIYRASGINFMGKRIKSLLFSNDLPIICNTNAQ AIMAVYPFTPELKIINAICEVASVPVFVGIGGAVTNGYRSLNIGMQAELLGAKGVVVNAP MANETIKKISEVLDVPVIATVLSLKDDIEGKVKAGARILNVAGGKRTPELVELCRKIVGE EYPIIATGGHTDEHILETIEAGANAITYTPQSSSEIFSEVMNGYREKMREKN >gi|281296914|gb|ADDO01000063.1| GENE 30 32403 - 32678 316 91 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282883181|ref|ZP_06291780.1| ## NR: gi|282883181|ref|ZP_06291780.1| GCN5-related N-acetyltransferase [Peptoniphilus lacrimalis 315-B] GCN5-related N-acetyltransferase [Peptoniphilus lacrimalis 315-B] # 1 91 1 91 91 145 100.0 1e-33 MLSFTFDKEKNHLFAYDGKTEIGYISFSQAKDVWIIEEVYLDAEYNIKIFILQIIDKFVD IARENKKKIIALDSLAKSVFSKNTKYIDVIS >gi|281296914|gb|ADDO01000063.1| GENE 31 32726 - 33505 226 259 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 229 1 221 223 91 28 2e-17 MNEILQIKNLIKSFKIKNKTVTALNDIYFDINKGECLGIVGESGSGKSTLARCLMGLYKD AKGQIIYQNKNILEFNKKEYVNYWVNVQMIFQDPYSSLNPRKTCFQIISEGLKNLEKVND KKELEKRVLKTMEICGLSKFFRDRYPYEFSGGQRQRISIARAIAVNPKIIIADEPTSALD VSIQAQIINLLSDLKSQYGLTLVFISHDLALVKHIADQVLVMQKGSLKEKNTVDEIFENP KDDYTKKLLSSLPKEDPNE >gi|281296914|gb|ADDO01000063.1| GENE 32 33498 - 34460 926 320 aa, chain - ## HITS:1 COG:CAC3182 KEGG:ns NR:ns ## COG: CAC3182 COG0444 # Protein_GI_number: 15896430 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component # Organism: Clostridium acetobutylicum # 1 320 1 320 324 338 54.0 6e-93 MKEILNIKNLKIYFASSKGTIKSLNGVDLTLKEGQTLGLVGESGCGKSLTSLAIMGLLDK KSLDYLDGEIIFLGENLLEKNEKQIEKMRGKDISMIFQEPMTSLNPVLKIGYQVSEIYRA HSNISRKEAKEKSIEMLEKVELNNAKLIYNSYPHELSGGMRQRVMIAMALAPNPKILIAD EPTTALDVTIQKEILELMKKLKKYYKTSLIFISHDLSLVAEIADVVSVMYQGLIVEEASV KEIFKNPLHPYTKGLMRARPLISDTRKRLFSIKGSLQDPRNLSESCYFCNRCQYVMDICK RKIPMQKDFNGHKVRCFLYE >gi|281296914|gb|ADDO01000063.1| GENE 33 34462 - 35304 738 280 aa, chain - ## HITS:1 COG:BH0030 KEGG:ns NR:ns ## COG: BH0030 COG1173 # Protein_GI_number: 15612593 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Bacillus halodurans # 2 279 23 300 301 242 42.0 5e-64 MIKRFRKFAKYYMQNKAATLCFILLLILIVLSIFADFISPYDFTKQDVSNTFLSPSPTHL MGTDNFGRDEFSRILHGGQMSLLIGISSTFFSIIIGLIIGLFAGYYGGKFDVFAMRVMDI FLSIPQLILAIALAATLGNGIFNLILALSLSSTPKYARLIRAKVIEEKNLEYVTAARILG ENDLKIIFFEILPNSLGPIIVEATIGVGVNILSSASLSFIGMGIEPPQAEWGQMLSEGRT FIRDYPFLTVFPGLAICISILLFNLVGDGLRDAFDPKKRG >gi|281296914|gb|ADDO01000063.1| GENE 34 35308 - 36231 297 307 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|167855436|ref|ZP_02478201.1| 30S ribosomal protein S21 [Haemophilus parasuis 29755] # 65 307 43 315 320 119 26 1e-25 MPKYILKRILILIPTIIGVSFVVFSLLYLSPGDAALASAGPNAPKETVEILRNKMGLNDP FLIQYGRFLKNLIFHFDLGTSYQSKTPVIEKILRVFPNTLKLAGVSLIFAIISGIILGII AGINKNNIIDSIISFAGMIGLAMPIFWSGLLLIIIFSSKLKLLPASGFSSWRHMILPVLA LGLQTSSSIMRMTRSSMIEVLDKDYIRTARAKGLKKSRIIFIHALKNAMIPIITTIGLQA GGLLGGSILTETVFSISGIGRLMVDSVKTRDYPVILGGVMFIALVYSIISIIVDILYGFL NPQIKME >gi|281296914|gb|ADDO01000063.1| GENE 35 36275 - 37360 1108 361 aa, chain - ## HITS:1 COG:FN0396 KEGG:ns NR:ns ## COG: FN0396 COG0747 # Protein_GI_number: 19703738 # Func_class: E Amino acid transport and metabolism # Function: ABC-type dipeptide transport system, periplasmic component # Organism: Fusobacterium nucleatum # 1 358 149 503 511 215 33.0 1e-55 MKFTLKEIDATFLKALGHPAVSIVSKKFVENGGDLTKDCLGTGAYVLDEWVQNDHANFSY NKYYWGAEPKYKNIEMKVIPESSQRLIEVESGGMDLALKIDPNDIKSIEENEDLKLLKKM DNSVHFIGFNMAKKPFDNKIARQAIVNAIDMESIFKTVYMNSGTLASSPVNPNFKYSLAG ELKPYNKNIEKAKELFAKANIKDDSELTIYVSDNQTRVNVATMMQDQLKDFGINLKVVRL EWGAFMDALKNGDHNMFIMSWNPSIIDTHYELYQPFHSNNKGIGPNFTFYGNKDLDTLID QGTQTFDDSKRKEIYEKAQRLIYEDMPWMYICYGETLMAASKDLPDFDMEAGYAQRYKNI R >gi|281296914|gb|ADDO01000063.1| GENE 36 37494 - 37787 292 97 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|300813247|ref|ZP_07093611.1| ## NR: gi|300813247|ref|ZP_07093611.1| bacterial extracellular solute-binding protein, family 5 [Peptoniphilus sp. oral taxon 836 str. F0141] bacterial extracellular solute-binding protein, family 5 [Peptoniphilus sp. oral taxon 836 str. F0141] # 1 80 1 80 418 149 98.0 8e-35 MKKIIVLMLGIMLFFTGCGKNTSQSKNNSDTLRVCLSEDAKNIDTVQINDDYSVNIINQV YDTLVELKPDGSLVNSLAEKNRKSRSTDFYNNFKTRG >gi|281296914|gb|ADDO01000063.1| GENE 37 37800 - 39056 1518 418 aa, chain - ## HITS:1 COG:BH3749 KEGG:ns NR:ns ## COG: BH3749 COG0766 # Protein_GI_number: 15616311 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine enolpyruvyl transferase # Organism: Bacillus halodurans # 1 415 1 417 440 456 57.0 1e-128 MEKIIVRPSGPLKGKIRIGGAKNAALPILAACLLGTEDIVLEDVPKLKDVEIMIEVLREL GVKVKYDGDLIVINSKNLTSYQTNYELMSKMRASFLVMGPLLARMGKAVNSLPGGCAIGS RPIDLHLKGFKALGAKVEMTHGNISAKADKLQANNIYLDFPSVGATENIIMTATLAEGET LIENCAKEPEIVDLASFLNKMGAKITGAGTSTIKIKGVQKLKGCYHQIIPDRIVAGTFMI APAITGGDVLLENVITNHMKPILAKLEEAGAEVIVDDDKVRVIGKKKIYPFEIKTLPHPG FPTDMQAPFMALLTQAEGQSSIIETVFENRFMHAEELKKMGAKIKVVDREAIILGKSKLY GSKVNATDLRAGAALILAGLVAEGQTEISQIYHIDRGYENIVEKFQDLGADIRRIETD >gi|281296914|gb|ADDO01000063.1| GENE 38 39169 - 40320 1208 383 aa, chain + ## HITS:1 COG:lin2354 KEGG:ns NR:ns ## COG: lin2354 COG0436 # Protein_GI_number: 16801417 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Listeria innocua # 5 379 7 381 383 248 34.0 1e-65 MKNFIGRNFRKIPASPFSDDYSKIYKDLIDFGVGDPDIETDKGIIESIYKAGLKGQTHYT DPRGTLEFRKAYVDFYKEEYHIDINEKNVLSTMSGTEALYIIFKGIIDEGDEVIIPSPFF SPYADQLKICGGKAKFLETYIENEYEFTISDLEKLVSDRTKAVLINTPNNPTGAVYSKQF LEEIYNFCLEKNILIICDDIYDNYTYYDDFYPSLKFDKNLENVITINSLSKDFVMTGLRL GAIIANEKLIDVFEYIHENILYCIPSLTQVGQVYALKNRKRICPPLKDEYKKRMKLAYKR LKELKNVEVIEPKGAFYLFPKINSNKYSMEEIVDKILKEAHVRVINGKAFGPGGENHIRI AVTVKEEKINEAFDRLSKLDIFN >gi|281296914|gb|ADDO01000063.1| GENE 39 40472 - 41779 1318 435 aa, chain - ## HITS:1 COG:FN1059 KEGG:ns NR:ns ## COG: FN1059 COG1114 # Protein_GI_number: 19704394 # Func_class: E Amino acid transport and metabolism # Function: Branched-chain amino acid permeases # Organism: Fusobacterium nucleatum # 8 419 5 415 425 242 40.0 1e-63 MDINKIFRDTITIGFALFAIFFGAGNLIFPPYLGVISGSNYIKAMIGFLLTDPVLPVLGV IVTANLGGRAEDLGKRVSPTFAKVLGAIAILTIGPFFCVPRTAATTYDIAVKQIFPSVPL WITSIVFFALTIVFVLNEGEVISYVGNILTPGLLIVLTIIIVKSIFDPIGPVRQIPDDNF FLRGFTEGYQTMDALGSALMAGIVMGDIKRRGYLKKDEQMKMMLGVGFVCFLLLAFVYGG LTYMGSTASSNFTAQSERVDILMGSVDALFGNLGRVVMGIGVSLACLTTSVGLTATCGNY FESISKGKLKYKYVVLASATVSVILSLLGVEGLINLAVPVLSTIYPVIIVLIVLSAFDKF IKYNETYISATLTTFIISLVQSLNMVFGILQGPTDIIKNLPLKNYGFEWLIPVVIVAIIC TIIASICHKKRAIEN >gi|281296914|gb|ADDO01000063.1| GENE 40 41875 - 42678 704 267 aa, chain - ## HITS:1 COG:no KEGG:Gura_1273 NR:ns ## KEGG: Gura_1273 # Name: not_defined # Def: DsbA oxidoreductase # Organism: G.uraniumreducens # Pathway: not_defined # 1 259 9 282 303 69 23.0 1e-10 MKLLIFSDVLDPWSWGLEGVLRALLFTYKDLSYEFIMIGLVDNYENFLPKNFSELNSVEL GNKILFDMYRAASTITKFPHFKKIPNLFSEEHKSSYILDKYYNAVRQISYDKSNLYMRRL KEWAILKEENIYDMQVQKEILKELDIDFNDFTSELEFIDEIFLEDRMLAFDYRVKNPPAF LIEDNKRLIKGYKSYEDLCKFIDDEVGIEKREINDSLLVEFVSTFSHVLKEEINILFSEQ SLDNLLKQGKILEKTFGNGKIYQLASK >gi|281296914|gb|ADDO01000063.1| GENE 41 42858 - 44981 2734 707 aa, chain + ## HITS:1 COG:VCA0511 KEGG:ns NR:ns ## COG: VCA0511 COG1328 # Protein_GI_number: 15601271 # Func_class: F Nucleotide transport and metabolism # Function: Oxygen-sensitive ribonucleoside-triphosphate reductase # Organism: Vibrio cholerae # 4 707 5 706 706 497 39.0 1e-140 MLTVIKRNGTEVPFDKEKITVAIEKAMNSTTGVFVEDQAEKIAREIEEYANTKEVPMSIY DIETEVYYKLINYNNPATARAYESYKSVQQYKREQNTTDNEILGLLNETNIDVMDENSNK NPIIASTQRDLIAGEVSKDIAKRKMIPLDLVEAHESGAIHIHDMDYIIQPIFNCCLVNMK DMLDNGTVVNGKMIETPKSFQVACNVMTQIIAQIASNQYGGQSIDISCLGKYLRRSFDKN LSSAIETLGDVDMAEKMAKKMTQKDLESGIQTIQYQINTLMTSNGQAPFVTLFMHIKDGD IYENEVALIIEEILKQRIKGIKNDAGVYVTPAFPKLIYVLDENNIHKDSKYYYLTSLAIR CTAKRMYPDYISAKKMASNYEGNVFSPMGCRAFLPPYKDQKGKYKFDGRFNMGACTINLP QIGILANGDENKFFEILNKRLDLVKRVGLLRYEHLKKVTSDSSPIHWQHGAIARLGKHES IAPLLLDGYSTVSLGYIGIYEATYLTKGVSHTDAKGYPFAMRIMDTLNAAVKKWTKEYGI KFTLYATPAESLTNRFNSIDRKRFGIIENVTDKGYYTNSFHVDVREEISAFEKFSFESKF QDKSSGGCISYVEIPNMEHNLEALETIVRYIYDNIQYAEFNTKSDYCAECGFDGEIKLNE DGQWQCPQCGNTDRATLTVVRRTCGYLGENFWNEGRTKEIKDRVLHI >gi|281296914|gb|ADDO01000063.1| GENE 42 45155 - 45484 253 109 aa, chain + ## HITS:1 COG:SPy2105 KEGG:ns NR:ns ## COG: SPy2105 COG0602 # Protein_GI_number: 15675857 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Organic radical activating enzymes # Organism: Streptococcus pyogenes M1 GAS # 6 107 85 188 204 98 51.0 3e-21 MNLEEIKGLTILGGEPFQNTEDLIEIVGKIREKSDKSIWIYSGYTYEQIQADPLKKKLLS YCDVLVDGLFIIKLKDLRLKFRGSSNQRIIDVKKSQEENKIITIDKFMN >gi|281296914|gb|ADDO01000063.1| GENE 43 45599 - 46693 884 364 aa, chain - ## HITS:1 COG:alr4509 KEGG:ns NR:ns ## COG: alr4509 COG2327 # Protein_GI_number: 17232001 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Nostoc sp. PCC 7120 # 3 308 2 292 349 130 30.0 6e-30 MKKILFSGYFGFDNSGDDAILKAMVDDFKKLNIDIELKAFSNNPVKTEKIYDIKSADRFN LSHLIANLKETDLFISGGGSLLQDVTSTRSLAYYLFLIFLAKILGKKVYVYANGIGPINK PFNRFMTKIILEKVDFISLRDKLSYDFVKKLKLKNKNIKVTADPVFSLEPISDKKTEEIL AKEGIKISQNTIGICIREWKKAQDLKEKLAYVCDYLVDMGYDVLLVPFHMPRDNVYSMEL AKLCKNKDRISTITKTYKAQELMGIFRKCKLLLAMRLHSVIYAAVVNLPMVGLIYDPKVR AMVDELGISEYVDVENFTTDELIDQLKKALDNLDQRKIILEKNTNKKKEKAKENISIALE LLNK >gi|281296914|gb|ADDO01000063.1| GENE 44 46690 - 48009 1298 439 aa, chain - ## HITS:1 COG:all5073 KEGG:ns NR:ns ## COG: all5073 COG3307 # Protein_GI_number: 17232565 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lipid A core - O-antigen ligase and related enzymes # Organism: Nostoc sp. PCC 7120 # 136 415 154 452 475 105 29.0 1e-22 MALLVLVSYIFLSTKFFLATMLMFCGIFFVLYDIKIGLCLMAFAYPFLPDIIGLLGFLSM GFVIFLRKILLDQRDFTVDIYGLSIGFFIVLALANTLTSVNVGGSIRDLGLNCAGVSFVF AMVNSLRKKEDINVFVSVLMVSVLMVSLVGIRQIFTGVVMRPEWTDVENSQDIAVRIYSV FTNPNIFAEYLVMTIPLGVGLMWYTKSMKKKMLFMAGVGLLLIALVMTMSRGGWLGIFVA AFIFVLIVDKRLLLLSIPIILIMIPFLPKSILERFISIGSNVDSSILYRTKIYDITFHLI KDNFINGVGFGYIPFKQVFETYIRTMPIYHAHNTFLEIFAEGGIIGLLVFLYMIFSILKN ANLYLAKSDDKYIKYLGAGAIASLFGILANGMTEHILYMPRIIFTFWILIGIIISLIRIS KNEKLEQTKKENLKVEGVS >gi|281296914|gb|ADDO01000063.1| GENE 45 48039 - 48578 117 179 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282883120|ref|ZP_06291719.1| ## NR: gi|282883120|ref|ZP_06291719.1| conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] # 1 179 1 179 179 290 100.0 3e-77 MYNSIIVGISMKITSKLGEIYSHSLLSKLIKKLNIFANFYRYSFVRRTLNDEKSIFENSF TYKIFIGFFGILNCFCNFLNRILREPIKNSLFLSPIKVVAKDLNSLLSFIFTFILYCGLF TSIYGLVFSKPIKLSLIILIFGFIGASLKGLYKDILENSLFINYFTDFFKLDKEVDQWW >gi|281296914|gb|ADDO01000063.1| GENE 46 48583 - 49068 670 161 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282883147|ref|ZP_06291746.1| ## NR: gi|282883147|ref|ZP_06291746.1| hypothetical protein HMPREF0628_1377 [Peptoniphilus lacrimalis 315-B] hypothetical protein HMPREF0628_1377 [Peptoniphilus lacrimalis 315-B] # 1 161 1 161 161 251 100.0 9e-66 MKIIDKKGKIFGIINVIDLLVILLVALIAVFGAKRLSKSPSVSNAQSKKGIIYMDVNEVK MATVSKIKEGDPLYDYDKGTYLGKIKKVSYEPFKKEVEYKGQVVLAEVPEKYIVHMEVEC DVKENDDFYQVGTEQIRIGNQQRVKNKNIATFAIVMDIKVE >gi|281296914|gb|ADDO01000063.1| GENE 47 49055 - 50182 1105 375 aa, chain - ## HITS:1 COG:sll1971 KEGG:ns NR:ns ## COG: sll1971 COG0438 # Protein_GI_number: 16329992 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Synechocystis # 76 370 98 398 404 98 26.0 2e-20 MIKVLHLISGGDTGGAKTHIFSLMKGLKNLVDARIICFIKDSFYDEAKDLGYNIKVFPQK SRADMSVVKKLREEIDREKFDIIHAHGARANFIVMFLKKYIRVPVITTIHSDYKLDFKDS FYKNLVFTTLNKVALKYFDYYITVSDSFRQMLIERNFNKDKIFVLYNGIDKDKKFNFIPK EDFLSRYNINYNGEFLVGIAARLDKVKDHQTFIAACKEVLKENTDIIFLIAGEGEEKDNL LKEIKGFEKNIYFLDFVKDNYSFFNAIDLNILTSISESFPYVILESALMNVASISTDVGG ISKVIINDKTGYLIGVCDYKSLSQKILYLYNNRQKLKELGENIHKLVEEKFSTDAMGKAQ FEIYNKILEEYNENN >gi|281296914|gb|ADDO01000063.1| GENE 48 50563 - 53766 3913 1067 aa, chain + ## HITS:1 COG:lin1949 KEGG:ns NR:ns ## COG: lin1949 COG0458 # Protein_GI_number: 16801015 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase large subunit (split gene in MJ) # Organism: Listeria innocua # 1 1064 1 1065 1070 1132 53.0 0 MPKKSIKKTLVIGSGPIVIGQAAEFDYSGSQAIESLKSLGIETVLINSNPATIMTDKKMA DKIYIEPITIDFIEKIIKKEKPDSLLAAMGGQTGLNMAMELDKMGILKKYNIEVIGTDID AIKKGEDRDIFRQTMKKINQPLVESEIVTSFEEGKKLAEKIGFPLVVRPAYTLGGTGGGF ANNEEELEEILKHGLKISPVSQVLLEKSIKGYMEIEFEVIRDGAGNSLIICDMENVDPVG VHTGDSIVVAPCQSLKKEVLDKLKKASIDIVNEVGVKGACNVQLALNPKTYDYYVIEINP RVSRSSALASKATGYPIAKVATKIATGLNLDEISCPNGENLLSFTPNPDYVVVKFPKWPF DKFKFAKRKLGTKMMATGEVMAIGSNFEEALLKGIRSLEIKKYSLENEFSEEKTLEELKK RIAFADDERIFDMAEILRRGYDIKEVEKATGIVPYFVEKIKWIVDQEEKLKKLNINDLSE EYLSNLKGHGFSDKAIGNFLKVSEETIRNLRKKYNIMPSYIPVDTSHFREKESYYYSSYE KKAQIKISQKDKVVVLGAGPIRIGQGIEFDYASVHAIKSLEKLNYTTIIINNNPETVSTD FDISDRLYFEPETEEDVLNILELEKPLGVILQFGGQTAIKLAEFLDSKGIKILGTDFDNI DKAEDRERFEELLNSLDINRPKGGGVSSVEEGIKLANKLKYPLLVRPSYVLGGKGMEITH DEDQLKKYLKAAFKEDSKNPVLIDKYLLGREIEVDAICDGQDILIPGIMEHLERAGVHSG DSISIYPADKLSKKSKEKILDYTKKIAKGLKALGMINIQFIEYMDDIYIIEVNPRASRTV PYISKVSGIPIVELATRAIMGEKLKDMGFGVGLYKEPKLYAVKVPVFSMSKLARVEISLG PEMKSTGEVLGIGKTISEALYKGFLASGTSMQDDKKKVLATVNDNDKKEFLSIAKIMNDL GYSFYATEGTGKMLEENNIPVTKINRLTESHPNIIDIIENNQVDLVVNTPTKGGDSKRDG FKIRRTAIECGVDIVTSLDTLLARVKVKNEGYKEDNLNIYELEELGN >gi|281296914|gb|ADDO01000063.1| GENE 49 53796 - 53918 71 40 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSYYLNYIFYGKNYNLNKKILGGKFTVNRNNFLLENFKKL >gi|281296914|gb|ADDO01000063.1| GENE 50 54097 - 55245 1407 382 aa, chain - ## HITS:1 COG:FN0208 KEGG:ns NR:ns ## COG: FN0208 COG1775 # Protein_GI_number: 19703553 # Func_class: E Amino acid transport and metabolism # Function: Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB # Organism: Fusobacterium nucleatum # 1 380 1 380 382 617 78.0 1e-176 MAEIKELLEKLKHIAENPREQLDNYLAQGKKAVGVWPYYAPEEIIYAGGLVPMGVWGGIG PIDKAKEYFPTFYYSLALRCLEMGLDGTLDGLSACMLTTLDDTLRPLSQNYKVSVGRKIP MVFLNHAQHRKEEFGKIYNAKLFESARKRLEEICDVKITDENLKKAFEVYNENRRLKREF IKLVGSHSQTVKASDRCYVLKAAYFMLKDEYNTLLKELNEKLKALPEEENLGPRVVTSGI ICDNPGLLEVLDDFNICVVADDVAHESRALKIDVDTSIEDPMYALADQFARMDEDPILYD PDIWKRPKYVVDLAIDNDADGCLLFMMNFNDTEEMEYPSLKQAFEKEAIPLIKMGYDQQM TDFGQVRTQLETFSEMVQLNNM >gi|281296914|gb|ADDO01000063.1| GENE 51 55257 - 56582 1807 441 aa, chain - ## HITS:1 COG:FN0207 KEGG:ns NR:ns ## COG: FN0207 COG1775 # Protein_GI_number: 19703552 # Func_class: E Amino acid transport and metabolism # Function: Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB # Organism: Fusobacterium nucleatum # 1 441 1 440 442 802 85.0 0 MSGKVIEKIPGKKPRPIEGHKPAAAVLRGVVDRVYGAAWDAKARGELVGWSSSKFPIELA KAFDLNVTYPENHAATTAAKKDGLRLCQTAEDMGYDNDICGYARISLAFAAGEPTDSRKM PQPDFVLCCNNICNMMTKWYENIARMHNIPMIMVDIPFQNTVDVPEEKVDYLVGQFQYAI KELEKLTGKKFDEKKFEQTCKIANRTAAAWLKACSYMAYKPSPLSGFDLFNHMADIVAAR CEIDAAEGFELLAEEYEQSVREGTSTWEYPEEHRILFEGIPCWPALKALFKPLQENGINV TAVVYAPAFGFQYTDVRSMAAAYCKAPCSVCIEDGVEWRETMAKENGISGALVNYNRSCK PWSGAMPEIERRWKEDLDVPVVHFDGDQADERNFSEEQYKTRVQGLVEIMEERKQKRLAA GEDVYTNFDNTKETDWSKATI >gi|281296914|gb|ADDO01000063.1| GENE 52 56596 - 57411 1184 271 aa, chain - ## HITS:1 COG:FN0206 KEGG:ns NR:ns ## COG: FN0206 COG1924 # Protein_GI_number: 19703551 # Func_class: I Lipid transport and metabolism # Function: Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) # Organism: Fusobacterium nucleatum # 1 261 1 262 265 366 75.0 1e-101 MSDVLTMGVDVGSTASKSVILKNGKEIVASSCIDVGAGTSGPARAIKEVLENAKITRDDV AYVMATGYGRNTLEEADYQMSELSCHAKGAYFLFPNVRTIIDIGGQDAKALKIGDGGMLE NFVMNDKCAAGTGRFLDVIARVLEVDVSELQNLDAKSTKQVGISSTCTVFAESEVISQLA SGTKIEDIVRGIHDAIASRVGSLAKRVGLRDDIVFTGGVALNKGMVRALSENTGHKILTS PLCQLNGALGAALFGYQKYKLEARKKARVKA >gi|281296914|gb|ADDO01000063.1| GENE 53 57681 - 59444 2212 587 aa, chain - ## HITS:1 COG:FN0204 KEGG:ns NR:ns ## COG: FN0204 COG4799 # Protein_GI_number: 19703549 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) # Organism: Fusobacterium nucleatum # 4 581 3 579 584 815 68.0 0 MGQYSLGSYFQNMKTIGAPIKKVDEANRDELLAVENEIREHIENSLKAGKPDEKVNERGE MTALQRIAELIDEGTWCPLNSLYNPGGNSHGTTGIIKGLAKVDGRWVYIIASDNKKLAGA WIPGQAENLLRGSDTAERLRIPLVYILNCSGVKLDEQEKVYPNRRGGGTPFYRNSRLNQL GVPVIVGIYGTNPAGGGYHSISPTILIAHKDANMAVGGAGILGGMNPKGFIDEEYAEQIA EQTANAKKVAPPGSVGIHFSQTGFFRECYAEEEGVLEGIRKYLSMLPKYDPEFFRVDTPK LPLYSADDIYSIIPMNTKRAYDVYDVIARLFDGSEFMEYKKGYGPEMVTGLAKVNGLLVG VVANVQGLLLNYPEYKEKSVGMGGKLYRQGLIKMNEFVTLCARDRLPIVWLQDTTGIDVG DDAEKAELLGLGQSLIYSIQNSGLPQLEITMRKGTAAAHYVLGGPQGNDTNAFSLGCAAT EINVMNGETAANAMYSRRLVKDKKSGKDLQPTIDKMNELIQDYINKSRPMACGQMGLVDE VVNMNLWRNYIIAFTESCYQDPDSICPVHQMLTPRVIRDYDRINNIK >gi|281296914|gb|ADDO01000063.1| GENE 54 59455 - 60252 1224 265 aa, chain - ## HITS:1 COG:FN0203 KEGG:ns NR:ns ## COG: FN0203 COG2057 # Protein_GI_number: 19703548 # Func_class: I Lipid transport and metabolism # Function: Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit # Organism: Fusobacterium nucleatum # 4 265 5 267 267 402 73.0 1e-112 MPRYDNYTNKEMQAVTIAKQIKDGNIAIVGTGLPLIGASLAKAVYAPDCYLIVESGLMDC NPIEVPRSVGDNRFMAHAAVHWTNATYVGFQANEYKHDKKRMIAFIGGAQIDPYGNVNST VIGDYNHPKTRFTGSGGANGIATYVNTIIMMQHQKRRFMNKIDYVTSPGWIDGPGGRERV GIPGNVGPQMVVTDLGILKFDEKTKRMYLAGYYPTSSPEEVIENTGFDIDVSRAVELEAP SEDVIKLIREVIDPGEAFIKKPVEE >gi|281296914|gb|ADDO01000063.1| GENE 55 60252 - 61220 1241 322 aa, chain - ## HITS:1 COG:FN0202 KEGG:ns NR:ns ## COG: FN0202 COG1788 # Protein_GI_number: 19703547 # Func_class: I Lipid transport and metabolism # Function: Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit # Organism: Fusobacterium nucleatum # 1 318 1 318 321 427 65.0 1e-119 MSKVMELKDAISKFVEDGDVISLGGFTTNRKPYAAVNEILRQGQKDFIVEAGPAGGDWDT LIGAGRVKAYINCYTANSGYTNVSRRFRAAIEQGTLLMEDYSQDVEMQRIHAAALGLPFL PVKLMMGSDLADKWGISKEQREKVEKLPNDKFVYVENPFKKGEKVVAAPVPEIDTAIIHV QMASPDGTTRILGNTFHDVDIAIAARKVIVTCEELVSDEYIKNHGSDDNKIPGFCVDAVV HCPHGSHPSQVYGYYDYDADFYKMYDKVSKTQEDFDKFLDEWVYGVKDHEEYLEKLGANR LINLKNTPGFGYATDVLKKEVK >gi|281296914|gb|ADDO01000063.1| GENE 56 61280 - 62416 1554 378 aa, chain - ## HITS:1 COG:FN0201 KEGG:ns NR:ns ## COG: FN0201 COG1883 # Protein_GI_number: 19703546 # Func_class: C Energy production and conversion # Function: Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit # Organism: Fusobacterium nucleatum # 6 377 7 372 375 431 73.0 1e-120 MLIRTLQGILAESGFASLTVQNGIMFLISFILLYLAIKKEFEPLLLVPIAFGMLLRNLPL AGLMDTAEPWQSSGVLAIMYNGVKSNLFPCLIFMGVGSMTDFGPLIANPISLLLGSAAQI GIYCAFILAIALGFSPQEAASIGIIGGADGPTAIFTTSNLAPHLLAPIAVAAYSYMALIP MIQPPIMKALTTKKERETKMVALRQVSKTEKVIFPVVVVVFTALLLPDVAPLLGLLMLGN LFKETGLTDRLSDTAQNALMNIVTIMLGLTVGATAEGNNFLAKETLMIIGLGLFAFCCAT AGGVLFGKVLYYVTGGKINPLIGSAGVSAVPMAARVSQVEGRKYNPTNFLLMHAMGPNVA GVIGSAVAAGVFLLLFKM >gi|281296914|gb|ADDO01000063.1| GENE 57 62434 - 62853 769 139 aa, chain - ## HITS:1 COG:MT2576 KEGG:ns NR:ns ## COG: MT2576 COG4770 # Protein_GI_number: 15842029 # Func_class: I Lipid transport and metabolism # Function: Acetyl/propionyl-CoA carboxylase, alpha subunit # Organism: Mycobacterium tuberculosis CDC1551 # 72 139 586 653 654 66 47.0 2e-11 MKYQVKVDGKIFEVEVEKVGGGYQSLTPGSLNAAGAFQPQAQPVQQQAQPAPAPAAASAP AAPAASGSGADGEVVSPMPGKILKVIADNGAHVEAGDVILILEAMKMENEIVAPIAGTVS LSVSVGQTVDTDALLATVK >gi|281296914|gb|ADDO01000063.1| GENE 58 62887 - 63195 574 102 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282883146|ref|ZP_06291745.1| ## NR: gi|282883146|ref|ZP_06291745.1| sodium pump decarboxylase, gamma subunit [Peptoniphilus lacrimalis 315-B] sodium pump decarboxylase, gamma subunit [Peptoniphilus sp. oral taxon 836 str. F0141] sodium pump decarboxylase, gamma subunit [Peptoniphilus lacrimalis 315-B] sodium pump decarboxylase, gamma subunit [Peptoniphilus sp. oral taxon 836 str. F0141] # 1 102 1 102 102 171 100.0 2e-41 MWGKETMTIAEAFGVSLTGIVVVFLSLVFLAIAIKIVSAVLNGFVKEPPKGGSANKQQVK TQAAPQNKGTDPKLIAAVVGAVSQEQRGRVENFRIVSINEVK >gi|281296914|gb|ADDO01000063.1| GENE 59 63538 - 63876 491 112 aa, chain - ## HITS:1 COG:aq_141 KEGG:ns NR:ns ## COG: aq_141 COG0537 # Protein_GI_number: 15605719 # Func_class: F Nucleotide transport and metabolism; G Carbohydrate transport and metabolism; R General function prediction only # Function: Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases # Organism: Aquifex aeolicus # 2 112 5 121 121 145 57.0 3e-35 MDCLFCNIVKGQIPSEKVYEDNDVYAFKDVNPEAPVHILIIPKRHIKSVDELEETDKELV GHIFLVAKKLAKENKLENGYRLVSNIGEEGGQSVKHLHFHLLGGRSFNWPPG >gi|281296914|gb|ADDO01000063.1| GENE 60 63942 - 64100 213 52 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282883218|ref|ZP_06291817.1| ## NR: gi|282883218|ref|ZP_06291817.1| radical SAM domain protein [Peptoniphilus lacrimalis 315-B] radical SAM domain protein [Peptoniphilus lacrimalis 315-B] # 1 52 1 52 52 83 100.0 4e-15 MKVNKFDQTFGYYLEDIYGQRTFKYSVNDYMESYEMKEIIKERDFGGNFWLS >gi|281296914|gb|ADDO01000063.1| GENE 61 64097 - 64789 667 230 aa, chain - ## HITS:1 COG:SP1279 KEGG:ns NR:ns ## COG: SP1279 COG0177 # Protein_GI_number: 15901139 # Func_class: L Replication, recombination and repair # Function: Predicted EndoIII-related endonuclease # Organism: Streptococcus pneumoniae TIGR4 # 4 197 1 194 209 191 48.0 9e-49 MENMILNSQEALEILKALIKLYPQNQPELEFKNNYELLCAVVLSAQTTDKSVNKISPILF ERYPRVEDMADADVNEIQEIIKSIGLSKNKSKYLKELSIELLENFNGQVPSTRKELMSLS GVGRKTANVLLANAFDIPAFAVDTHVNRICKKLKFVKEDLNVLQVEEEMMKKIPDKYWKQ AHHSILLFGRHQCVAKNHDHSICLLRIKDKLQKNEIAQKAMAKICEGQQI >gi|281296914|gb|ADDO01000063.1| GENE 62 64803 - 66098 1389 431 aa, chain - ## HITS:1 COG:CAC1286 KEGG:ns NR:ns ## COG: CAC1286 COG0621 # Protein_GI_number: 15894568 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 2-methylthioadenine synthetase # Organism: Clostridium acetobutylicum # 6 431 4 433 436 391 49.0 1e-108 MAKTFSILTLGCKVNQYESEAMAELFEKNGYIQVDNDTDVADVYIVNTCTVTNLSDRKSR QYIRRAKRENPDSTVAVVGCYAQVAPKEVEKIEGVDVVIGTSERSKIVDLIEEAKEEDKK INIVRDIKKDRDFQFIKIDENFHKTRSYMKVQDGCNRYCTYCIIPYARGTIRSRRIGDCV REAIRLANAGYKEIILTGIHVGSYGVDLGPVRLIDLIEAIAEVDGIERIRLSSVEPNIIS EDFMRRAIACSKLCDHFHLSLQSGSNKVLKDMNRHYNREEFIEKTKIIKKYMPYAGLTTD IIVGFPGESDEDFEDSMSIVREVEFSKVHVFKYSKRKNTPAADRADQVDGNIKIKRSEEL IKLQDQYLKKFREKNMPRTLKVLFEEFDQGYYFGYTDNYIRVKVKSDKDLINKILDVRLV DNEEVAFGELV >gi|281296914|gb|ADDO01000063.1| GENE 63 66099 - 66791 609 230 aa, chain - ## HITS:1 COG:lin1507 KEGG:ns NR:ns ## COG: lin1507 COG1385 # Protein_GI_number: 16800575 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 215 1 235 255 107 34.0 2e-23 MYRFFEDRNYDNINELNKENLHHLKNVIRIKADEDFSVVFKDKIILFNLKDDMLIYKKEI FDSNEPPIKLSLFFGILKGDKNEKVIEHGTEVGVYDFYPLIMDRCVSNISDKVDKKIQRW QKIAKSAAGQSKRDIVPLVHRPIKVDEIAKNYSGDLILFYEDERNLFFKDIKEKLSKNLA IIVGPEGGISKREIEVLKDAHRISLGKRILRAETSSVVGAFYIIHNMECD >gi|281296914|gb|ADDO01000063.1| GENE 64 66784 - 67689 579 301 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|158320270|ref|YP_001512777.1| ribosomal protein L11 methyltransferase [Alkaliphilus oremlandii OhILAs] # 1 299 1 309 313 227 38 2e-58 MKYIEADIYSSKSKKDLLIGFLYDEDYYTLEEITNDLAKELNQDEKDWDYVSDISNNLKD DELIVRVYPSDEKSARDLKEKLEENNLGTLKFFEKDDQDWANNWKAYYKAFEIGKNLLIV PEWETYDNANNRKIVKINPGMAFGTGTHESTYMCLEALDKYVKKDMNIFDIGCGSGILGI AAIKLGGKSATLVDIDDKCIKASEENAKLNEVYDKVKVKKGNLLDVIEGKCDIIVSNIIA EIIVDEISNLSKHLCGQKIFITSGIILEKKDLVTRALIKESFEILEVKEKNDWCAIIARY V >gi|281296914|gb|ADDO01000063.1| GENE 65 68113 - 68535 642 140 aa, chain - ## HITS:1 COG:FN1079 KEGG:ns NR:ns ## COG: FN1079 COG0783 # Protein_GI_number: 19704414 # Func_class: P Inorganic ion transport and metabolism # Function: DNA-binding ferritin-like protein (oxidative damage protectant) # Organism: Fusobacterium nucleatum # 4 138 7 144 144 102 43.0 2e-22 MNKLNKYLANLEVGNILLHNLHWNVEGFTFKAVHEYLEGLYDEFFDMLDDVAEYERKNGQ FPPASLKEYLELSDVKERVSKSVDAKEAIKTALELIKHMDELAKEIREETDCFILSNMME DHLTHYAKEIWFMESMLKEN >gi|281296914|gb|ADDO01000063.1| GENE 66 68619 - 69746 1199 375 aa, chain - ## HITS:1 COG:MTH1291 KEGG:ns NR:ns ## COG: MTH1291 COG0484 # Protein_GI_number: 15679295 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: DnaJ-class molecular chaperone with C-terminal Zn finger domain # Organism: Methanothermobacter thermautotrophicus # 2 372 4 372 376 292 41.0 6e-79 MRNFYEILNVTENVTKEELKSSYKKMAKKYHPDLNPGDKEAEEKFKEINYAYEVLSDDEK RQIYDTYGEEGLKGNYSTSGGGFGGFSDIFDDIFDIFGSGGGFSSSSYKRSKNYPQKGTD INVEITLDFFEAVFGCQKEINVKVTDDCPRCHGQKAEPGTSKNTCDKCHGEGQIRVESAS AFGRIVRTTICDKCHGSGEIIEKACTKCKGKGKILNSKKINVKIPAGVDNGNIVSLPNQG NSGDNGGGKGDIYVYIKVREDSIFKRRGNDLFIDMPITYSDAVLGGTIKVPTLKKIVDYD IPKATKGGTTFKIKGQGVPFVNKNIKGDLYFTVNILIPKKISEEERKILEKLRDNDTEIK HEQKNFFEKVKDFFE >gi|281296914|gb|ADDO01000063.1| GENE 67 69837 - 71675 2554 612 aa, chain - ## HITS:1 COG:CAC1282 KEGG:ns NR:ns ## COG: CAC1282 COG0443 # Protein_GI_number: 15894564 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone # Organism: Clostridium acetobutylicum # 1 607 1 615 615 749 68.0 0 MSKIIGIDLGTTNSAVAVMEGGSPIIIPNIEGNRTTPSVVAFTKDGERLVGETAKRQAIT NPDRTVSSIKREMGTDHKITIDDKTYTPQDISAMILQKLKSDAESYLGEKITDAVITVPA YFTDAQRQATKDAGKIAGLNVKRIVNEPTAASLAYGMDKDDASQTIMVYDLGGGTFDVSI LELSDGVFEVRATRGNNRLGGDDFDNRLIDYIAEEFKKENSIDLRDDKMSLQRLKEAAEK AKKELSSRMTSNINLPFITATASGPLHLNMDITRAKFDELTSDLVKKTEDPVTNALKDAG LSASDIDKVLLVGGSTRIPAVQECIKRLIGKNPQKDINPDECVALGAAIQGGVLSGDVKD LLLLDVTPLSLGIETMGNITTRLIERNTTIPTKKSQIFTTAADNQTSVEIHVLQGERQMA KDNVTLGRFNLDGIAPARRGVPQIEVTFDIDANGIVNVSAKDLGTGKEQHITITSSSNLT DEEIDKKVKEAEMYAKEDEKNKNLIEARNNADSIIYQSESTLKDVEGKISEDEKKKIEDA LEALKSVKDSDNLEDIKKKTEDLTQAFYSVSEKIYKDNANKGQAENPQGQKSDDDVVDAD YEVVDDEEDSNK >gi|281296914|gb|ADDO01000063.1| GENE 68 71689 - 72291 677 200 aa, chain - ## HITS:1 COG:AGc573 KEGG:ns NR:ns ## COG: AGc573 COG0576 # Protein_GI_number: 15887680 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone GrpE (heat shock protein) # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 34 200 11 188 211 87 32.0 1e-17 MVDKNKKKEDENIFDKNIKNEENIKDEDYINEEDKDFSEDLEESFKEEETEIEVEEEKEK GDDKLQNLTDKFMRLQADFVNFRRRTEKEKAQYVDLGITKLANSILPVIDNFERSMDAQT DHDGFFEGICLIKDQLIDALKANNIVEMDAKGKKFDPNFHHAVMTEKSDEYDEGIVTEVF QKGYLINDKVLRPAMVKVSE >gi|281296914|gb|ADDO01000063.1| GENE 69 72291 - 73316 829 341 aa, chain - ## HITS:1 COG:CAC1280 KEGG:ns NR:ns ## COG: CAC1280 COG1420 # Protein_GI_number: 15894562 # Func_class: K Transcription # Function: Transcriptional regulator of heat shock gene # Organism: Clostridium acetobutylicum # 1 341 3 340 343 184 34.0 3e-46 MDRRKVEILNAIISSYIVDPIPVGSRTLSKDYELGISSATIRNEMADLEDLGYLNKPHQS AGRIPSYKAYRFFVDEVFSSGKIIYDKEIISQVKDRILQETIDSGGIFKSVAKILADFSN CTAYIVAPQKADTTIKRITLMKIESNLILLLIIGNKGVVERHFIELYEDINENELEQIEN IISKEVSGIDFNKIDQVNITLKGPMVSYKYLIAEIFKRLKGFNNKVSAIELYYDGLTNIF NFEEYKDPKKAQEFMSFIEDRDSLMEILSNKNFSKNLDVLIGDENKADLMKNNSIIRAVF VNSNNLNGSLGLIGPARMDYKKLIKTVSIFKNAVEKVLEGM >gi|281296914|gb|ADDO01000063.1| GENE 70 73617 - 75428 2006 603 aa, chain + ## HITS:1 COG:CAC1278 KEGG:ns NR:ns ## COG: CAC1278 COG0481 # Protein_GI_number: 15894560 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane GTPase LepA # Organism: Clostridium acetobutylicum # 4 600 6 602 602 848 68.0 0 MRNQKNIRNFCIIAHIDHGKSTLADRMIESTGMLTKREMEEQVLDSMDLERERGITIKLK AIRLIYKDDRDGKEYILNLIDTPGHVDFNYEVSRSLAACEGAVVVVDSTQGVEAQTLANV YLAIDQDLELLPVLNKIDLPSAHPLEVKKEIEDIIGIDAQDAPLISAKNGIGIDEVLHGI VDNFPPPSGDENKPLKALIFDSIYDSYRGVVCQVRIVDGKVRAGDQILMMATGKIFEVVE VGFTANGHIPSDELSAGDVGFICASIKVVGDARVGDTITSVKNPCKEALPGYKKVVPMVF CGIYPGEGEEYSSVRDALEKLQVNDASLVFEKETSKALGYGFRCGFLGLLHMDIIQERLE REFDLNIVTTSPSVIYKIEKTDGEILDIQNPTNLPEPTEIDKMEEPIVRAEIMCPTDYVG PVMDLCQNRRGIFIDMTYLEETRTLIKYDLPLNEVIYDFFDALKSKTRGYASYDYELTGY KESSLVKLDILINGELVDAFSMIVHEASAYNRARKICEKLKDVIPRQQFAIPIQAAIGTK VIARETIKALRKDVLAKCYGGDISRKRKLLEKQKEGKKRMRQVGNVEIPQDAFLAVLKYD EEK >gi|281296914|gb|ADDO01000063.1| GENE 71 75412 - 76554 819 380 aa, chain + ## HITS:1 COG:SP1409 KEGG:ns NR:ns ## COG: SP1409 COG0635 # Protein_GI_number: 15901263 # Func_class: H Coenzyme transport and metabolism # Function: Coproporphyrinogen III oxidase and related Fe-S oxidoreductases # Organism: Streptococcus pneumoniae TIGR4 # 2 379 1 374 376 251 35.0 2e-66 MMKKNKISIYIHIPFCRSRCHYCDFCSSVIDKKQVEKYIKYLKKEIHLYKDILEGREIST IFIGGGTPSSIDEIFIGQILEEFKNFNFSKDIEITIEANPNSLSLEKLKKYRNFNINRIS IGAQSFNNKILKTIGRIHNKEEIFKTVEKIKEAGFTNFNIDLMLALPYQTLKDIEESVEI LKILNPNHISYYSLIIEDNTNIKKLYDKNSSLFPSENMDRKMYHYLVDNLEKIGYDQYEI SNFAKKSFECKHNLSYWTLKDYLGFGLSASSNLREKRFTNTCSFPSYYNSLDKEEKPIDF SEILSKKDRMNEFSIMGIRLNSGIDTKNFEEIFSTNFFKYYEKEIDKHIKDGLIEVKKDK ICLSKKGRDLSNIVEVDFIK >gi|281296914|gb|ADDO01000063.1| GENE 72 76588 - 77337 855 249 aa, chain + ## HITS:1 COG:lin0323 KEGG:ns NR:ns ## COG: lin0323 COG0778 # Protein_GI_number: 16799400 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Listeria innocua # 1 247 1 244 245 152 35.0 4e-37 MNETINLLMKHRTIRKFTKDKIRDEDLKIMLEASNRAPSANGLQKYSIIHVTDKNIKDKL SQIGKQSYMKDATELFIFIADLFRNAQIAKEKGENESLFTSFEMLFQSIGDSYIACQNLV VAAESLGYGTNYFGNIFNDIDKVIEILKLPKLTFPVIALGIGIIDQNPQVKPRMNLENKV FDNSYKIYDDYLETFKEYDNIMQTYYDLRDANRRVDSYTNQVITQAKKSFIERKDILKSI EKQGFILSK >gi|281296914|gb|ADDO01000063.1| GENE 73 77447 - 79753 2747 768 aa, chain + ## HITS:1 COG:MA3787 KEGG:ns NR:ns ## COG: MA3787 COG0493 # Protein_GI_number: 20092583 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: NADPH-dependent glutamate synthase beta chain and related oxidoreductases # Organism: Methanosarcina acetivorans str.C2A # 299 765 1 469 469 534 60.0 1e-151 MNKIVEKKELAPNIFSLDIYAPRVAASALPGQFVIVIADEYSERIPLTISDYDLEKGTVQ IVVQASGQSTKKICKLNKGDYLKDFVGPLGRPSEFCNMDLDTLKNKKYLFVAGGVGTAPV YPQARFFKEHGLHCDIILGAKNKEFVILEEKLKSVCDNLYICTDDGSYEFKGMVTARLDD LYENQGKKYDQCVCIGPMIMMKFVCLTTKKYNLPTIVSLNPIMVDGTGMCGACRCLVDGK TKFACVDGPEFDGHLVDWDSAMSRSKQYIDNFKTKELSEHKNNLDGLNVTDANLENKKIN DVKIEKAKDRWKRTPIAEQDPNVRNKNFDEVCLGYTPQEAVVEASRCLNCKVPGCVKGCP VSIDIPGFIKEIANANFEQSAKVLSMYTALPAVCGRVCPQESQCEKGCVLVKKGDAVSIG KLERFAADYARENNVKLNQSLKKLDKKVAIIGAGPAGLTCAGELAKMGYQVTIFEALQKS GGVLVYGIPEFRLPKKIVEAEVENIKNLGVKIENDVIVGRTVTIDSLIDEGFEAIFIGSG AGLPRFMGIPGENLNGVYSANEFLTRNNLMKSFDKEYDTPVNVGEKIAVIGGGNVAMDAA RVAKRLGGDVSILYRRTEKELPARIEEVGHAKEEGIDFQMLTAPTEIIADEKGWVKSLKC VRNELGEPDASGRRSPVPIEGSEFLADFQTVIMALGTSPNPLIAHTTKNLEINKKGGIVI NEEAVTSRENIFAGGDAVTGSATVILAMGAGKKAAKSIDEYLRNQTVK >gi|281296914|gb|ADDO01000063.1| GENE 74 80016 - 81182 1145 388 aa, chain + ## HITS:1 COG:CAC0492 KEGG:ns NR:ns ## COG: CAC0492 COG0787 # Protein_GI_number: 15893783 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Alanine racemase # Organism: Clostridium acetobutylicum # 7 385 6 386 386 265 36.0 1e-70 MYKNPTRSAWVEVNLDNYISNLKYIKSIINKNSKIMCVIKSDGYRAGALELTEASVKFGI NYFGVATLSEGISLRKHFKDINILILGYTPSYLLEDLCKYDIMPNIYSYDNCKDYNEICK KYGKVGKIHLSIDTGMNRVGFIPGKEAFFDIIKISKLSNIKIDGVFSHFAKADVDEDFTK KQFDTFTSFTKEIENAGVNLGLKHISNSASILKHREYDLDMVRPGAIMHGLYKGFFKDEK LPLKKDLQVFAMIANIKTIKKGQGVSYGHKYIATKDTKVVTIPLGYADGFPRILSGKFSV LIGGKKCPQIGNICMDQFMVDATGIDCKINDVAVLLGKDGDEEISAFDLCQLTGDIELSF IDHLNYRMPITFIENNKIKCHRDLVRDL >gi|281296914|gb|ADDO01000063.1| GENE 75 81243 - 81824 502 193 aa, chain - ## HITS:1 COG:no KEGG:DSY4813 NR:ns ## KEGG: DSY4813 # Name: not_defined # Def: hypothetical protein # Organism: D.hafniense # Pathway: not_defined # 1 191 4 194 200 121 35.0 2e-26 MYKKFVIDFYKHIKKFDDFEYLVAILQAQIAPTSKNLKLGTMLNLRNGKRPTRDYFLLYK DSIKEKLDIDFCVLRSSDESVLVYFYKAKRLLKKLQEKKIINFLSPLGYEDCKKIGDYLE KLQERFTGACPDEIGIFLGYPLKDVIDFKNKDKKNCKCVGYWKCFNNIESSKKAFARYDK VKYEEIKKIVSSM >gi|281296914|gb|ADDO01000063.1| GENE 76 81837 - 82265 924 142 aa, chain - ## HITS:1 COG:CAC0587 KEGG:ns NR:ns ## COG: CAC0587 COG0716 # Protein_GI_number: 15893876 # Func_class: C Energy production and conversion # Function: Flavodoxins # Organism: Clostridium acetobutylicum # 1 142 1 142 142 128 52.0 4e-30 MSKVNVIYWSGTGHTEAMANAIVKGAEAAGAEVKLIPVGQATEDDVKEVENIAFGCPAMG SEELEETEMRPFMDNVNSLLSGKKVLLFGSYEWADGEWMRLWQEEVEGTGANLISDGFAA YDDPDEDALEECEALGKELANA >gi|281296914|gb|ADDO01000063.1| GENE 77 82391 - 83017 669 208 aa, chain + ## HITS:1 COG:BH1123 KEGG:ns NR:ns ## COG: BH1123 COG4753 # Protein_GI_number: 15613686 # Func_class: T Signal transduction mechanisms # Function: Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain # Organism: Bacillus halodurans # 105 202 424 521 526 76 39.0 3e-14 MINHLNIAKNLKSNSINMALDIYESNIKDFKRSAKELKLYLSKLNMFLYTYFLVQYNKDL ESYALKCSKLFTKENSPEKLRAIGEKMLIGYSNNFSLALKENDHELVEIALEYINKNYTK KITLQSVASKLHISRNYLCHLFKIKTGYKFCEYINLQRVNKAKALIEEDKKTFEFISFDC GFSSQSHFSTTFKKYVGLTPNEYKKQAL >gi|281296914|gb|ADDO01000063.1| GENE 78 83050 - 83505 618 151 aa, chain - ## HITS:1 COG:no KEGG:DICTH_1379 NR:ns ## KEGG: DICTH_1379 # Name: not_defined # Def: transporter # Organism: D.thermophilum # Pathway: not_defined # 1 150 1 156 157 71 33.0 8e-12 MKVKDLAKNAILIAVYILAVNINPIGFMAIQFRVAEALSVIPFFNRKFVPALIIGGALAN LYSPLGLVDMAVGGACAVITYIFSKYIENNYINSFIFALASGILVSLELYYTAGTPYFLT VLTVGLPTLVITCLSVYIIEHTNLKDIIKRA >gi|281296914|gb|ADDO01000063.1| GENE 79 83705 - 84943 1317 412 aa, chain - ## HITS:1 COG:CAC0285 KEGG:ns NR:ns ## COG: CAC0285 COG0389 # Protein_GI_number: 15893577 # Func_class: L Replication, recombination and repair # Function: Nucleotidyltransferase/DNA polymerase involved in DNA repair # Organism: Clostridium acetobutylicum # 3 385 5 385 396 239 35.0 9e-63 MDILHVDMNSFYVSCELIDKPNLKSQPVAVGGDEKLRHGIILAKTPMAKKFGVLTGEPIW QAKKKCPNLLIFPPNYEKYIRISKAAQKIYYSYTNQVEPYGMDECFLDITGSKKLFGSPE KIAFEIKERIKTELKVTVSVGLSFNKVFAKLASDMRKPDYCTFIYKENYKKIVWPLKVQD MIMIGPQTTKKLNKINIKTLGDLAEADPEILRKNLGINGIKIYNWANGMDNTRVKDYYQI IPIKSIGRSITCKEDLLNYEEVRAVIQKLCEDISKRLIENNYLARGVNVGYRKNNLSHES SDVLLDYPSNSTLEISAKAMDVFLKNFTFKDDEKIRALYIRAIKLIQNREAIQIDLFNDV KKHFKYLSLEKAIYNIRNRYGKNSITYGNLIGDLKMPNDGRELVTMPTSFWI >gi|281296914|gb|ADDO01000063.1| GENE 80 85187 - 85912 601 241 aa, chain - ## HITS:1 COG:lin0467 KEGG:ns NR:ns ## COG: lin0467 COG3619 # Protein_GI_number: 16799543 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 6 220 3 215 221 134 35.0 1e-31 MIIDYRRENMAESFRLAVLLTLTGGFQDAYSYFARGGVFANAQTGNVVLLAKQLVTGNLE GTIKYLIPIGAFFIGVFVAVFIEEKLADKLKFNWRQMILGFQILIVIFCGFMPEKYNSIV NALLSLSCSMQITAFKKIKGLSTNTAMCVGNIRNASDHLARFLFLKERGFFKNAIHYYTI IFVFAIGAAFGYTCVSKFSLRGVWGALISLIIAFILFFLEIDEDEREEDIEEDIKEGKLV K >gi|281296914|gb|ADDO01000063.1| GENE 81 86033 - 87229 944 398 aa, chain - ## HITS:1 COG:FN1148 KEGG:ns NR:ns ## COG: FN1148 COG1301 # Protein_GI_number: 19704483 # Func_class: C Energy production and conversion # Function: Na+/H+-dicarboxylate symporters # Organism: Fusobacterium nucleatum # 9 387 8 386 390 389 59.0 1e-108 MKKKVNFFDSLVFKLIIAIIIGIFLGQSINENLVGVVDAIKRILGDFIGYMVPLIILGFI SPSIVSLKDSAGKILSVTLAICYISSVGAATMSLFAGRIIIPHLNIAENVVSANELPKAI FNLEIAPIMPVMTALITSVLIGLSVLWTNSKTWENLLLEFNKIVLAMVDKVVIRFLPFYI GLTFTELSYEGVVIHELPVFLKIILIVIVGHFIWMGLLYSIGGFISKVNPKEVFKHYGPA YFTAVGTMSSAATLPVALKCARKSKVLDAQIRDFVIPICANTHLCGSVLTETFFVMTVSQ ILYGAMPKIPTMILFILLLGIFAIAAPGVPGGTVVASLGLITSVLGFNDTGTALMLSIFA LQDSFGTACNITGDGAIALIVTGIFKKVPGKNEDSINA >gi|281296914|gb|ADDO01000063.1| GENE 82 87403 - 87915 214 170 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15902812|ref|NP_358362.1| hypothetical protein spr0768 [Streptococcus pneumoniae R6] # 11 163 2 154 165 87 32 4e-16 MSFEIKGIENLNNEERLKYMVSFAKATIEIESDFVAMMANLSSVIMATIKDLNWAGFYIV RKDQLVLGPFQGLPACTRLKDKGVCVSAWQNKSIVRVKNVHEFKDHVACDSASNSEMVLP IKIHGEVIAVLDLDSPKIARFGEVEEKHFADLVKLIEDQLEKTYEELKNI >gi|281296914|gb|ADDO01000063.1| GENE 83 88320 - 88745 496 141 aa, chain - ## HITS:1 COG:BH3735 KEGG:ns NR:ns ## COG: BH3735 COG0764 # Protein_GI_number: 15616297 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases # Organism: Bacillus halodurans # 5 138 4 139 140 141 50.0 3e-34 MKYEIEEILKILPHKYPFVLIDKIIDGEEGKWALGVKNLTYNEEFFQGHFPDRPIMPGVL IIEACAQTGAIAILSANKNKLAVFTSIKNAKFKSQLKPGDTAYIKTQLVKEKLNIGIAKS QVKVEDRIVATCEFSFALIDK >gi|281296914|gb|ADDO01000063.1| GENE 84 88735 - 89952 1289 405 aa, chain - ## HITS:1 COG:BS_yjaY KEGG:ns NR:ns ## COG: BS_yjaY COG0304 # Protein_GI_number: 16078199 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: 3-oxoacyl-(acyl-carrier-protein) synthase # Organism: Bacillus subtilis # 3 402 5 412 413 356 47.0 4e-98 MNRVVVTGIGFISPLGNTIDELTKNLKIGKNALNEISLFDNKNSKVKFACQADINLEDFF SKKELRRMDRVSAFGILAARDALKDSKLSKEEIKNASIIIGTGIGGLTTIEEESEKANTK GYEKISPFFIPKSIANITSAMIAIDLGLHGYSSTSVTACASSLTAILDAYRHIKDGYNNI VIVGGSEASINRLGIFGFESMKALSTSDDINRASIPFDKERQGFVMGEGAGILVLEEYKQ AKKRKAKIYGEIIGAGATTDAYHITAPLESGEFAKKAMEDALASAKIDATKIEYINAHGT STKLNDKVESKIYKELFTHANISSTKSMTGHLLGASGALEAIISLIALNNNFIPPTINYK EKDDECPININTKALDKNLTYVMTNSLGFGGHNVSVIFKKVKDEI >gi|281296914|gb|ADDO01000063.1| GENE 85 89949 - 90659 251 236 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 3 233 4 238 242 101 30 2e-20 MNKVALITGASGKIGLACARKFKEENYKLALAYRSEEKLINLCEFKDDKDVIFLRGDLRN SSDCKNIVEKTIEKFGQIHVLINNAGVTRDKLLLTMKDEDFSYVIESNLYSAFYMCKYVL KNMIKNKYGKIINISSVVALRGNIGQANYAASKAGLLGLTKSLSAEVASRNINVNAICPG FIKSQMTQGLEDKYVDKISAKRLGEAEDVASLAYFLASEDCSYIHGQEIVVDGGLL >gi|281296914|gb|ADDO01000063.1| GENE 86 90652 - 91560 824 302 aa, chain - ## HITS:1 COG:L0184 KEGG:ns NR:ns ## COG: L0184 COG0331 # Protein_GI_number: 15672755 # Func_class: I Lipid transport and metabolism # Function: (acyl-carrier-protein) S-malonyltransferase # Organism: Lactococcus lactis # 3 295 5 303 308 166 35.0 5e-41 MKALLFAGQGSQIMNMGLDFYENSKEARSFIDNLKEKDEILKVFNMDEEKLKETKNTQLA LIAFQTMVSFLLRDIDFDGFSGLSIGEYSALYKSDVISLEDTIKIAKYRGKRMQEVSKKL DTSMYALMTNNYILVEEVLKKLSTKENFGQISNINTDGQIVISGSKDILQETVKIFKDRG IRSISLKVSGPFHTSYMDPVKEDLRDFFENIEFKPPKKSLYLNLSGQKYKGGDLKEIMAF QVASPVKFKSIIENMINDGIDTFVEIGFYNVLSKFVKKIDKNVKTYAISTYKSYEEFRSK YE >gi|281296914|gb|ADDO01000063.1| GENE 87 91557 - 92573 993 338 aa, chain - ## HITS:1 COG:CAC3580 KEGG:ns NR:ns ## COG: CAC3580 COG2070 # Protein_GI_number: 15896814 # Func_class: R General function prediction only # Function: Dioxygenases related to 2-nitropropane dioxygenase # Organism: Clostridium acetobutylicum # 6 334 12 346 355 273 47.0 3e-73 MRIEDKVKIPIIQGGMGVGISLSKLAGSVASLGGIGTISAADIGFKEKDFFKNRKTANYR AIFQEVKKAKEISKGKGIIAMNIMYATLDYDEIVKKSIEAGVDLIVSGAGLPLNLAELTK GKNVLIGPIVSSLRALRIILKRWKKVDKVPDLIIVEGPLAGGHLGFKDVNKAKSLREITK EILNFLKEENLQIKVFPAGGIRNKEEVQEFLSMGAYGVQVATPFIASYQCDAHENFKKEI IRARDEDLSIINSPVGMPARAIKNKFLYDIEKENIKKRNISCIRCIKTCDSINMKYCISE YLIKSVLGFEGLVFSGARIDQINKIRNVKEIIGDYFNI >gi|281296914|gb|ADDO01000063.1| GENE 88 92557 - 93489 974 310 aa, chain - ## HITS:1 COG:CAC3576 KEGG:ns NR:ns ## COG: CAC3576 COG2070 # Protein_GI_number: 15896810 # Func_class: R General function prediction only # Function: Dioxygenases related to 2-nitropropane dioxygenase # Organism: Clostridium acetobutylicum # 6 302 9 305 310 278 48.0 7e-75 MNLEKILNIKYPFIQGGMANISKGKFAASVSEAGGLGLIGTGGMSPEDLLKEIKIAKENT DKLFGVNLLLLNPQIDALVDIVISQGIKFLTTGAGNPGKYMKRFKENKIKVFPIVSSIAL AKRMEKLGADGIIVEGEEAAGHIGDISTMVLLPQVAQAVNIPVVAAGGIGSGRQIFAAEV LGASGIQFGTSLLATFECPIHQNYKEKIIKSKSSNITVIGLTNAYKTRVIKNKMARTYLE IEKTNKDKLALEKLTLGALKKAVEVGDMENGSIMAGEVVGQINEILSIKDLFEKFHHEYK EVREFYENRR >gi|281296914|gb|ADDO01000063.1| GENE 89 93491 - 94387 823 298 aa, chain - ## HITS:1 COG:SP0417 KEGG:ns NR:ns ## COG: SP0417 COG0332 # Protein_GI_number: 15900336 # Func_class: I Lipid transport and metabolism # Function: 3-oxoacyl-[acyl-carrier-protein] synthase III # Organism: Streptococcus pneumoniae TIGR4 # 26 296 27 322 324 169 37.0 4e-42 MGLIIEKASKIDLEDKRDNFYFEKRLDTTDEWIRKRTGIKERFISHTPLSEMATDVALKL NLSQEERERIKILIVSTIGGDYIVPSLASYVHGKLSLPQEVLAFDINMACSGFVGASILC ETYLKENELALVIGAEKLSDFTDMADRSTAIIFADGAGAVLYKKDSSKFYKDLGTIFDSK NLTLKRNSYLKMNGREVFKFAINEVPKSIKKLLQESCLKDEDIDIFLLHQANERIKNSVE KHFKGYFYSNIETMGNTSSASVAMSLGDLYEKNILKDKKILLCGFGGGLNYQTCIVRG >gi|281296914|gb|ADDO01000063.1| GENE 90 94378 - 95265 807 295 aa, chain - ## HITS:1 COG:CAC3568 KEGG:ns NR:ns ## COG: CAC3568 COG0825 # Protein_GI_number: 15896802 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA carboxylase alpha subunit # Organism: Clostridium acetobutylicum # 27 291 1 262 274 212 38.0 7e-55 MAIKDIFENYYRKLNKDIDMQSYKKYMENKISNISISPTDRLYLAREKNRPTSIDFLDNI LEDKLIFKGDRIGGEDSSIISGIGRIKDLNISFVAIEKGKTFQEKVENNFGMVCPEGFRK AIRIFKEAEKFNRPVLTIIDTPGANPSPKSEENGQSQQIANSLLTMSSLKVPIISIIISE GYSGGALSLSLCDYLIMLENAIFSILSPEGFGSIIFRDSSKVEEAAKLLKFTAKDMKDFD ICQEIIPEKIDPSYEYYKEIFSYLQKDVYEKFKDLQKFSSVELIEKRHERYMNWD >gi|281296914|gb|ADDO01000063.1| GENE 91 95255 - 95581 304 108 aa, chain - ## HITS:1 COG:sll0336 KEGG:ns NR:ns ## COG: sll0336 COG0777 # Protein_GI_number: 16331294 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA carboxylase beta subunit # Organism: Synechocystis # 1 106 184 290 326 117 55.0 6e-27 MQMANTVNALSKFLQKNLYISVLTNPTMGGVTASFASLGDIIIAEKDAHIGFSGPRVIEK TLNIKLSEDFQSAEHLLENGFVDEILCRKEIRQYLGKILSFHEDMYGN >gi|281296914|gb|ADDO01000063.1| GENE 92 95448 - 96110 287 220 aa, chain - ## HITS:1 COG:BS_yttI KEGG:ns NR:ns ## COG: BS_yttI COG0777 # Protein_GI_number: 16079973 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA carboxylase beta subunit # Organism: Bacillus subtilis # 33 174 3 146 262 110 41.0 2e-24 MTSFWNNRKKLLADIRSGRNLAKIKARGKKIRKCPICNKYISEEELEKNSYICKCGGYFP MPALKRIDEIMDASYEVIDFDISFSNKINYPNYDRKYLNAHIRTGLKEAVVLAKGEILSY PCLVFAMEKEFFMGSMALNTGKIIRKAIEIAQENSLPLISFALSGGARMQEGIFFSYADG KYCQRFIKIFAKKFIHFSFNKSHNGWCNGKFCKPRRYNHC >gi|281296914|gb|ADDO01000063.1| GENE 93 96091 - 97470 1164 459 aa, chain - ## HITS:1 COG:alr0939 KEGG:ns NR:ns ## COG: alr0939 COG0439 # Protein_GI_number: 17228434 # Func_class: I Lipid transport and metabolism # Function: Biotin carboxylase # Organism: Nostoc sp. PCC 7120 # 4 440 5 443 447 473 52.0 1e-133 MLKKVLIANRGEIALRIIRACHEMGIKTCAVYSKADENSLFVKLADESYSIGEALPAKSY LNVDKILTVAKARNCDGIHPGYGFLSESYYFANLVRKNKIKFIGPDPETIKNMGNKSLAI KTMRENGVPTVPGSDGNVKNIEEAIKIGEKISYPLLLKASSGGGGKGIRRVDSREELVEK FPLVKMEAKASFKDDSIYMEKLIENPRHIEVQILCDDFSNILCLGERNCSIQRENQKMIE ESPSPGISQGLREKLYDAARKSAKACAYKNAGTVEFLVDKDENFYFLEMNTRIQVEHPIT EMVTGVDLVKSQLKIASGLDIKNLKVELKGHAIEARIIAKDPLNNFSVSCGRVNFFHEPG GVDTRFDSDLFTGSEISPYYDSMVGKLIVKDRTRTLAIKKLRRALEETFVSGISTNIWYL YTICHDFSFIKGNYDTSFIKNNEENILKIMRSYYDKFLE >gi|281296914|gb|ADDO01000063.1| GENE 94 97464 - 97868 334 134 aa, chain - ## HITS:1 COG:SP0423 KEGG:ns NR:ns ## COG: SP0423 COG0511 # Protein_GI_number: 15900342 # Func_class: I Lipid transport and metabolism # Function: Biotin carboxyl carrier protein # Organism: Streptococcus pneumoniae TIGR4 # 1 125 3 154 161 68 30.0 4e-12 MNNFDTIFDKFINSNLSKLKFKDNNFELFLEKGGEKAEIEIKNSETPLKETHEKTFEEIC SPIVGVIYLSQGQGKENYVSLNSKVKKGQVLCILEAMKVFNELKAPFDGIIRKINFNSED LVGQGDVIFEMEKC >gi|281296914|gb|ADDO01000063.1| GENE 95 97861 - 98091 506 76 aa, chain - ## HITS:1 COG:FN0150 KEGG:ns NR:ns ## COG: FN0150 COG0236 # Protein_GI_number: 19703495 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl carrier protein # Organism: Fusobacterium nucleatum # 3 72 2 71 75 60 54.0 6e-10 MTFDKIKNIIVENLGVSPEEVKLDSLLSDDLGADSLDAVEISMAIEEEFGIDIPDEVLEK FKKVSDIVNFVDKENE >gi|281296914|gb|ADDO01000063.1| GENE 96 98375 - 98905 730 176 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282883174|ref|ZP_06291773.1| ## NR: gi|282883174|ref|ZP_06291773.1| putative lipoprotein [Peptoniphilus lacrimalis 315-B] putative lipoprotein [Peptoniphilus sp. oral taxon 836 str. F0141] putative lipoprotein [Peptoniphilus lacrimalis 315-B] putative lipoprotein [Peptoniphilus sp. oral taxon 836 str. F0141] # 1 176 1 176 176 281 100.0 2e-74 MKRNLKILCGILIFILLSFVACNKAPANEKKPEVGKNETEVVQENPKNNSSVNVEENNLK NETKDQAQTSTNQNVKVEEDETDLSSVDMEKEKFINYKDAGFTKEENDSFKESDDGKKLE NFKINFRKDDFDFRQIVKDYEYKYKDKTYRGDLTILLTGGGEGDYFATYTGVLEEV >gi|281296914|gb|ADDO01000063.1| GENE 97 98998 - 99333 383 111 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282883237|ref|ZP_06291836.1| ## NR: gi|282883237|ref|ZP_06291836.1| putative cyclin related protein [Peptoniphilus lacrimalis 315-B] putative cyclin related protein [Peptoniphilus lacrimalis 315-B] # 1 111 2 112 112 212 100.0 8e-54 MAISFIFITMQTFACNINSCANDITKEGMEIQESKIIDTSINLRGFDDDVIYGYRTTLRQ SYPNFAKEIRGFEIVRNGLRFRGTLYFQYSGGTPGDYFGVYEGDLYFAGRA >gi|281296914|gb|ADDO01000063.1| GENE 98 99549 - 100799 1186 416 aa, chain - ## HITS:1 COG:BH0634 KEGG:ns NR:ns ## COG: BH0634 COG0151 # Protein_GI_number: 15613197 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylamine-glycine ligase # Organism: Bacillus halodurans # 1 414 1 413 428 377 44.0 1e-104 MKVLIIGTGGRENALAWKISKSKNIDKIYMAKGNGGSQDFATNVDISPTDIDGLLDFAKK EKIDLTVVGPEDPLCAGIVDKFKENNLKIFGPDKACARFEGSKEFTKKFLEKYNIPTAKY KSFIDYDSAKNSLEEFSYPLVIKADGLCLGKGVFICQDKKEALESLEKIFIDKIFKDQGK KVVIEEFLKGFEASLLCIVSNNKLFPLQTCKDHKQIFDGNMGPNTGGVGTYSPGDKFSQK TEEEIRKILKGIEIGFNKEKISYYGILFIGFMIENDIPKVLEFNVRFGDPETEVLMPRLK GDLLEIMMKTLDNTLSEDDIKWKDEVSLTTILCSGGYPNSYQKGKEITGLDKVDGDVIIF HNGTVKKDGKYYTDGGRVLSVTSLGKDLIEARKKVYKNIEKINFQDMYYRKDIGLI >gi|281296914|gb|ADDO01000063.1| GENE 99 100807 - 102312 1788 501 aa, chain - ## HITS:1 COG:BS_purH KEGG:ns NR:ns ## COG: BS_purH COG0138 # Protein_GI_number: 16077720 # Func_class: F Nucleotide transport and metabolism # Function: AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) # Organism: Bacillus subtilis # 2 501 5 512 512 463 48.0 1e-130 MRALISVYDKENIVEFARELVALDWEIISTGGTFKILKENNIPVKEVEEVTGQREILSGR VKTLHPKIHGGILFRRDNKDDKKTIEEEQIKPIDMIVNNLYPFENCLREGKDHETLIENI DIGGPSMIRAAAKNYKDVLIVTEPSDYKSIIEALKENKIDMTFRETLARKAFSLTAHYDS VICNYFQEKADEKFPKYINKSYTFSNKLRYGENSHQEAAYYQGKIYAPYKKLHGKEISYN NLYDMFAAVKAAREFDDITVVAVKHTNPCGIGSGKSVKEAFIKARDCDDESIFGGIIAIN HIVDKEAAELLHEIFLEIVVAQGFTSEALEILEKKKNIRLIELKDFNNFELDTSFKEVLN GIIVQDYDDILLDEDKLQIVSKNKPTEKEMEDLKFAFKCVKYTASNSIVIAKDGASLGIG QGQTKRSWAVEEAIERAGEKIKGAVCASDGFFFRDTMELLNKAGVRAIIQPGGSVKDKEV IEYADEHEMAIIFTGIRHFRH >gi|281296914|gb|ADDO01000063.1| GENE 100 102317 - 102919 663 200 aa, chain - ## HITS:1 COG:CAC1394 KEGG:ns NR:ns ## COG: CAC1394 COG0299 # Protein_GI_number: 15894673 # Func_class: F Nucleotide transport and metabolism # Function: Folate-dependent phosphoribosylglycinamide formyltransferase PurN # Organism: Clostridium acetobutylicum # 7 198 4 202 204 174 48.0 8e-44 MTSNINIAVFISGGGTNLAALIEGQDKNVFKGKIKLVLSNKKSAYGLVRAQNAGIKNIVE KDNEKILKILQDENIDLIVLAGYLKILPDFIIKNFENRIINIHPSLIPSFCGDGFYGIKV HEKVIESGVKLTGATTHFVTAETDMGPIIMQEAVKVNFEDSPEVLQKRVLKVEHRILVES VRLFCQGSLKVIENRVKIER >gi|281296914|gb|ADDO01000063.1| GENE 101 102903 - 103931 816 342 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169632702|ref|YP_001706438.1| phosphoribosylaminoimidazole synthetase [Acinetobacter baumannii SDF] # 3 339 12 345 356 318 47 7e-86 MSINYKDAGVDVAAGQEEVKLIKTIVEKTHDSNVLSAIGGFSGLYDINFKNIEEPVLASG TDGVGTKVIIAQKMKKNDTIGIDCVAMCVNDILCQGAKPLFFLDYIGAGKLVPEKMAEIV KGVSLGCKIAGASLIGGETAEMPGVYNIDDYDLAGFAVGIVDKKKIIDKSLIKEGDILFG LSSSGIHSNGYSLVRKIVFEENNFSLDQKFQGLEKNLGQTLLEPTKIYVKEMLPLVEEGL IHGMCHITGGGFYENVPRMIPNGFCAKVDLSKVKRPQIFNLLQEWGNLKLEDMYGTFNMG IGLIFAVDKNDEKKVMDHFKGYDSIYKVGSVVKGDNKIDLKY >gi|281296914|gb|ADDO01000063.1| GENE 102 103937 - 105214 1516 425 aa, chain - ## HITS:1 COG:MTH646 KEGG:ns NR:ns ## COG: MTH646 COG0034 # Protein_GI_number: 15678673 # Func_class: F Nucleotide transport and metabolism # Function: Glutamine phosphoribosylpyrophosphate amidotransferase # Organism: Methanothermobacter thermautotrophicus # 3 422 12 456 474 316 38.0 5e-86 MSGIFGVFSSKKNVNVFPTIYSGLFALQHRGQDAMGVSLLENDKLSEVKGKGLVTDNIKF DNINRLEGYVGLAHVRYPFSDDDKSLLPMPWVFYPGTEGEKALIAIDGKFINKVEAEEIS EVLNRSMDDIIEFISNLKGAYSILFAKEDKMIAIRDPYGIKPLVIGHKGCETIVSTESCA IEANGGQVDHFLQAGEIVVIDKNGYKSYFAKERAYCPCIFEMVYTARPDSIIDGVSVYDA RLKMGEILYRENPVKADIVVGSPDSGLIAAIGFAKASGIEYENAIVRNKYIGRTFILPTD DMRKKDIKIKLNPIKKFLKGKDVVLVDDSIVRGNTIKRVIEILKDSGVNKIHIRIASPPV INSGSLTFDIPKEEELISHNRSIEEVRKLIGADSLGYISLEGLREACGNKNYYEKCFGGN DPFKE >gi|281296914|gb|ADDO01000063.1| GENE 103 105218 - 105694 725 158 aa, chain - ## HITS:1 COG:MJ0616 KEGG:ns NR:ns ## COG: MJ0616 COG0041 # Protein_GI_number: 15668797 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase # Organism: Methanococcus jannaschii # 3 149 2 145 157 142 54.0 2e-34 MRVSIIMGSISDREIADKVVKKLKEFDVHYEVKVISAHRALDLLKNYVENAQEESEVFIG IAGKAAHLAGVIAGITTRPVIGIPVKSSLMDGLDSLLSTVQMPSGVPVATVAVNGGENAA ILAVQMLSLKDQELQRKLDNFKKTMAEKIKNTEYRYEG >gi|281296914|gb|ADDO01000063.1| GENE 104 105824 - 106504 862 226 aa, chain - ## HITS:1 COG:DR0226 KEGG:ns NR:ns ## COG: DR0226 COG0152 # Protein_GI_number: 15805262 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase # Organism: Deinococcus radiodurans # 2 207 62 257 294 98 33.0 1e-20 MEVTYRGKTKNLFQEDGKFFMQFKDDMTGTDGVFDTGGNQVAGSIAGAGHECIKVSKYFF ERLKEEGIKTHYINADLEKNVMEVKKASVFGKGIEVITRFVAVGSFIRRYGSYIEEGKPL NNYTEITLKDDDRDDPLIIEDALVQLGILKEGEYDKICQMNIKISNIIKDILKEKGLDLY DIKLEYGRLAGSDEIVLIDEVSGGNMRAYKDGKYIKPLELSKYMGI >gi|281296914|gb|ADDO01000063.1| GENE 105 107181 - 108671 1574 496 aa, chain + ## HITS:1 COG:CAC3225 KEGG:ns NR:ns ## COG: CAC3225 COG0773 # Protein_GI_number: 15896472 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate-alanine ligase # Organism: Clostridium acetobutylicum # 38 493 3 456 458 372 44.0 1e-102 MLEQYIIYDVKSLGHFIKIFLHICYNILRIGGRILFDFNIEAHKYKNIFFIGIGGISMSA LAELMIYNGYKVFGSDKNKSYETEKLESKGAKIYYDHKKEHIKDMDLIIYTDAISMDNEE LKAAIVEKKDIIDRASFLGAIMKSYNISIAISGTHGKTSTTSMVAEIIKNLDTDPTIMLG GQLDDINGNIKIGKEKKLFLTEACEYKANILKLFPTTAVILNIDEDHLDYFDNIDHIIRT FKGFTEKLNKDDYCIINIDDENTRKLLPIDNAKLITFAIDKKADYMAKNIDFDMYGRPYY DLYYKDKYIGKVELAILGYHNIYNTLAAIGACHENGIDFEKCIKGIGDYKGVHRRLEFKG LYKNSRVMDDYAHHPTEIKSSISAIKKSCKKRLFTVFQPHTFTRTKLLLDSFAKSFDQSD VIIITDIYAAREKDYGDIHSKTLVDAISNHHKNAIYIKEFSDIIRYLKENLKDDDTVVTM GAGNVYEIGQELLKNN >gi|281296914|gb|ADDO01000063.1| GENE 106 108755 - 109747 1121 330 aa, chain - ## HITS:1 COG:CAC0901 KEGG:ns NR:ns ## COG: CAC0901 COG0533 # Protein_GI_number: 15894188 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Metal-dependent proteases with possible chaperone activity # Organism: Clostridium acetobutylicum # 1 314 5 320 340 350 51.0 2e-96 MKTLAIESSCDETSVAILQDGREVLANIVASQIDTHKKYGGVVPEIASRQHVEAINTVIE EAFEKSKLNYSDIDLIAATRGPGLIGALLVGLSAGKAMALSLNKPFLGINHIMGHVCANY ISHKELKPPFIGLIISGGHTYLIDVKNFVDFDLCGTTVDDAAGEAFDKVARAMGLSYPGG PVIDKLAKEGKETIEFPRVMINEGYNFSFSGLKTAVINYMHNNEQKHQEIIKEDVAKSFQ EAVVDVLLEKTFRLQKEKGLDKIVLSGGVSANSRIREAFEERGKKEGVEIYYPSISLCTD NAAMIASCAYYLYKSKTYDGKTFADPNLGL >gi|281296914|gb|ADDO01000063.1| GENE 107 109760 - 110197 222 145 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|16077660|ref|NP_388474.1| hypothetical protein BSU05930 [Bacillus subtilis subsp. subtilis str. 168] # 1 142 1 146 151 90 34 5e-17 MQTKIRLAETGDADDIYQIEKLSFENPWSKNSLINLIEKDKLSEILVYEIDNKVVSYISY MKIFDEIHIANVATHPDYRNKKIAGELFKYFVAYAEDNKLSITLEVKTTNEHALSLYRAF NFKIKGFRKNYYGIDKDALIMWREI >gi|281296914|gb|ADDO01000063.1| GENE 108 110172 - 110831 195 219 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|238855674|ref|ZP_04645973.1| ribosomal protein ala-acetyltransferase [Lactobacillus jensenii 269-3] # 42 215 1 186 380 79 32 7e-14 MKVLGFDTSTMTTSVSIIEDENMLALYSLQGSVYHSESLSDMVNNILNKFDFDLSQIDLI SVGIGPGSFTGIRIGLTFAKVMAQVLKKDIVAVSSLKACAIKEDGLVGSIIDARRGLIYA CLMEDGKVLMDDTIIELEKFKDIVGDRKIILQGVDAKKFIHEFKNAKLGKELQMNAYYIA LLGLKKFKEVGGDDFYKLVPNYLKLSQAEKNYADKNKTC >gi|281296914|gb|ADDO01000063.1| GENE 109 110812 - 111273 425 153 aa, chain - ## HITS:1 COG:CAC2838 KEGG:ns NR:ns ## COG: CAC2838 COG0802 # Protein_GI_number: 15896093 # Func_class: R General function prediction only # Function: Predicted ATPase or kinase # Organism: Clostridium acetobutylicum # 1 145 1 149 152 134 45.0 5e-32 MEIILDSLEKTKEFGFLLGQLCKGGMVLCLNGDLGAGKTTITKSLAEGLGIKANVTSPTF TIVNEYRGKTNLYHIDTYRLNEGIDTLYLGFDEYFYSDGITVVEWADKIKNSLPEEYMTI YIKVEDNIRKLEITYIGDKYKVVEEKLYESFGI >gi|281296914|gb|ADDO01000063.1| GENE 110 111274 - 111798 541 174 aa, chain - ## HITS:1 COG:CAC3555 KEGG:ns NR:ns ## COG: CAC3555 COG0778 # Protein_GI_number: 15896791 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Clostridium acetobutylicum # 3 156 2 154 174 101 33.0 8e-22 MFLDLAKKRRSIRKFTDKEVTDKEIKEIFESVLRAPTAVHRDVMKYILIKDKKSLEILSK FKKSGAEFLKGSSLAIAVISDKSLAKNTYHQDACIGATFIQLACVDLGLSSTWANVTDAK NEEGKASQEYLHELLNLDEKFNVECIIGIGHGAEEKSEKKAWDYDTHVKEIVIK >gi|281296914|gb|ADDO01000063.1| GENE 111 111888 - 112466 638 192 aa, chain + ## HITS:1 COG:SP1847 KEGG:ns NR:ns ## COG: SP1847 COG0503 # Protein_GI_number: 15901675 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Streptococcus pneumoniae TIGR4 # 1 190 1 189 193 160 43.0 2e-39 MKLLEDRIIKDGKILEGDIIKVDSFLNHQLDIKFLNTLAEDVAKYFKNKNINKILTIEAS GIAFATVISENMNYIPVVFSKKKKTLNIGDSLWQSHVKSYTTKKDYMISVSKEFIGKDDN LLIVDDFLAEGNALRGLIDISKKAGANIEGISVAVEKGYQGGGDYVRKLGYDLYSLAIID SIENGKFSFKRI >gi|281296914|gb|ADDO01000063.1| GENE 112 112469 - 113593 993 374 aa, chain + ## HITS:1 COG:no KEGG:TDE1481 NR:ns ## KEGG: TDE1481 # Name: not_defined # Def: hypothetical protein # Organism: T.denticola # Pathway: not_defined # 6 371 8 373 378 312 45.0 2e-83 MLEIKEVKTDKDLDEFCHLVYSIYKNNDYFVYPIYDDYKNSLKGVNNRLISCPHKLFLAS KDNKIVGRILAYVDEELNEYHSSSVGYVSQYECIEDEEVSKALLDACSKFFKSLNIKIMR GPVSLPDGDDNRGFLINAFDKYPSVMNVYNKKYYNDQFVNYGFSLYHDVFAYKANKDDLL AKIDKLSRLLPQVQKRYSYKTSVLDTKNMEKELEDVYKILDSALPPSWEDFIPVKKSDVY SIFEQMKSLIVKDLIVIARNYQDEPIGFALTLPDYNEILKDFKGKLSLFNKIKFLLKKNS IKRVRMFVLMVVPEYRNKGVTSSIYFHVFKNAVNKGYTILEGSTIWDYNKDMINDIEKFG AIKDKIYRVYEKIL >gi|281296914|gb|ADDO01000063.1| GENE 113 113643 - 113981 609 112 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282883138|ref|ZP_06291737.1| ## NR: gi|282883138|ref|ZP_06291737.1| conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] # 1 112 1 112 112 96 100.0 8e-19 MEYLLKRIAYLKGLADGYDLDSESKEGKILSELIDVISDMVDEFKEANEEMEDYLDMVDE DLSNLEDYVYDDEDYDLYDDDEDFDIDDYDLYDDEGSCECNGECESCEDEDK >gi|281296914|gb|ADDO01000063.1| GENE 114 113997 - 114554 742 185 aa, chain - ## HITS:1 COG:CAC2094 KEGG:ns NR:ns ## COG: CAC2094 COG0231 # Protein_GI_number: 15895364 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) # Organism: Clostridium acetobutylicum # 1 185 1 185 186 231 61.0 4e-61 MITAGDFRKGLTFEMDGDVYEVVDFQHVKPGKGAAFVRAKIKSVLTGSIKDSTFNPSEKF EKAVIENKDMQYLYNDGTLYYFMDTESYEQIPLEKSMVEDALNFIKENDMVNINFFQGKA FRVSPENFVELEVTATEPGVKGDTSSGGSKPATVETGFTLNVPLFVNNGDKIRIDTRTGE YMSRV >gi|281296914|gb|ADDO01000063.1| GENE 115 114614 - 115549 669 311 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282883169|ref|ZP_06291768.1| ## NR: gi|282883169|ref|ZP_06291768.1| hypothetical protein HMPREF0628_1445 [Peptoniphilus lacrimalis 315-B] hypothetical protein HMPREF0628_1445 [Peptoniphilus lacrimalis 315-B] # 18 311 1 294 294 503 99.0 1e-140 MKKKGFIYIFTIIIISLLAVIFYFIYQSSYTSIQVAKNRQKKIQADYYAESLINLALSQD NFLENLKSYYEEAKSHKKGIEKRINPTIDINDLSDERIILKLWKTGEFKLESECTYKKIN SKYGLEGTYINQAYKKKKAILNSSNIKNEDLNEIVQGFEKIKNAQADLNCKIFEIEGNYK IKDSGAFFKLYEEIELDNEEKEEITKALISYRDIIYLKNGSLEIVGKIKFKNLFIINGKI YNDTFRNEGVIYLDREGQINSPTILKGYLIDPFDRAGSISVKLDETIINDYDKILPGYFK LQIKNLRSFGE >gi|281296914|gb|ADDO01000063.1| GENE 116 115546 - 116085 410 179 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282883136|ref|ZP_06291735.1| ## NR: gi|282883136|ref|ZP_06291735.1| prokaryotic N-methylation domain protein [Peptoniphilus lacrimalis 315-B] prokaryotic N-methylation domain protein [Peptoniphilus lacrimalis 315-B] # 7 179 1 173 173 273 99.0 4e-72 MARKLNLKFTLKTKAYSLIELILALALSSILILCLSSIFNIGQLSLSKSFLERKSGEENS FVLDYIKDEISKAKYYYKTDADSSIVIVKDAVNNISTKGKYEHICYINYNKNIYRITFQA STLHKINVNNSSCDGKNKLAEGVCLKSNLDGNLLTLEIRDEKKTLIKKEIALRCIEVQE >gi|281296914|gb|ADDO01000063.1| GENE 117 116027 - 116419 368 130 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282883189|ref|ZP_06291788.1| ## NR: gi|282883189|ref|ZP_06291788.1| conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] # 20 130 1 111 111 171 100.0 1e-41 MIIITMMRKIERKKVKGSLMIEVIFSIVLVGLVDATILNNLLSINKASEKLKSYNKLVDY GNSKMEELISQSYRGEDIYLNNSSEKSYSSEVEIENLSKFKHVILKARDNKNGKEIKFEV YLKDKGIFTN >gi|281296914|gb|ADDO01000063.1| GENE 118 116388 - 116849 459 153 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282883109|ref|ZP_06291708.1| ## NR: gi|282883109|ref|ZP_06291708.1| prokaryotic N-methylation domain protein [Peptoniphilus lacrimalis 315-B] prokaryotic N-methylation domain protein [Peptoniphilus lacrimalis 315-B] # 4 153 1 150 150 256 100.0 3e-67 MKIMKTKAYSLVELVLVLAIMSILISAISLKAGVIENYKAKNQIKKLVLDLNYVRNFAQK TNTRTSLIIGNEGYSFDLLGEKEEVKFSKLIEIIDTNLDTVSFTNLGKPAFLNGSSTSGH IIFKIKNKTMGITIAPVSGKVTYYDNYNYDEKD >gi|281296914|gb|ADDO01000063.1| GENE 119 116821 - 117990 1048 389 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282883170|ref|ZP_06291769.1| ## NR: gi|282883170|ref|ZP_06291769.1| hypothetical protein HMPREF0628_1449 [Peptoniphilus lacrimalis 315-B] hypothetical protein HMPREF0628_1449 [Peptoniphilus lacrimalis 315-B] # 1 389 1 389 389 532 100.0 1e-149 MESFAKKIKLRKLSKRESLLLTVFLLILIQFILYFFIINTQKTIYDNLVNKDFKDEIIIK NKPYTGLRDFNKDSIDKFLSENNIAKENINESTNHNVDILQVQKDIKVDELANLENLTKY YGYSNINLHRKNQDTYDLILRAEKETKKVSYDDIRKAYFKTDEKSDANNKEEIKQKLQKV SVKENNNSSAKVGGKVSQVRKEKINIEPKKALKKEKKAEKIKEVKDIKEFKEIKKMDIPV EELFIPSKDQIEELKSDPFSIDLRELTSINDNCKLTYIANIYCLSIYYKNSKTEPIILDL ANEEDYISFDVLYTKDFKGRIGVITKNNELVTCDDVKDDKDKSLDFGQWIRMEFKEEDIK QIFIEDESEDENIILIRDLRHENNENKSL >gi|281296914|gb|ADDO01000063.1| GENE 120 117992 - 118546 605 184 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282883206|ref|ZP_06291805.1| ## NR: gi|282883206|ref|ZP_06291805.1| putative esterase [Peptoniphilus lacrimalis 315-B] putative esterase [Peptoniphilus lacrimalis 315-B] # 1 184 1 184 184 352 100.0 5e-96 MKNKYLALGDSIVEGYKLQGKSFVYYLSKDFDIVNRGMNGLTSNLLKYYRGDLKPFTHVI VHIGINDFLQGYDNAQVEKSIMELVDIFKSEDLKIIFLKPIIIAQEACDYNWCSKTHYPL IKERLINYREFLDKLGQEEDFQIIDLMDTAGIDIYDNLMDGIHPNLKLSKEMGKYIGTKL LQEV >gi|281296914|gb|ADDO01000063.1| GENE 121 118543 - 119235 569 230 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282883121|ref|ZP_06291720.1| ## NR: gi|282883121|ref|ZP_06291720.1| hypothetical protein HMPREF0628_1451 [Peptoniphilus lacrimalis 315-B] hypothetical protein HMPREF0628_1451 [Peptoniphilus lacrimalis 315-B] # 1 230 1 230 230 383 100.0 1e-105 MNIYGVISANFSKEFLCGSILLSKNLKNSLLIDSYNGFRNLDILTGITDSIYDINDFLTM GEDVIRKNQNFDYIPASYSKEVSDFDFKIFNQKLNELTYENVVISIPLFMEYINNYLNDL SGLVIFTHKDNLSLRNTEKILLSLVKKRKLTKTFVIFTDLIEDLNLEDEDLKFLQKPNVQ VIKSGKIREDFLNDRDFIKVMESLTRLMEGEEGQINFIKNKSIIERIFKK >gi|281296914|gb|ADDO01000063.1| GENE 122 119232 - 119966 546 244 aa, chain - ## HITS:1 COG:MA1979 KEGG:ns NR:ns ## COG: MA1979 COG2003 # Protein_GI_number: 20090827 # Func_class: L Replication, recombination and repair # Function: DNA repair proteins # Organism: Methanosarcina acetivorans str.C2A # 9 243 1 228 229 194 44.0 9e-50 MLIFYGVEMEKNKFTIKDMTEEERPQEKLLHLGPSALTNAELLALIIRTGTKELTSVELC EKILRELKRENNSSLLSGLRIASMDKLTAIKGVGQAKAAMIMAALTLAERLNSSSIYDKK KITSPEDAAKYVMASMRDLETEVFRIIILNTKKEIKYIREISHGIINMTVVHPREVFRQA ISDGAHSIILLHNHPTGDPSPSQEDRNLTRRLVEVSKIVGIDICDHIIIGDNTFFSFLKE GILY >gi|281296914|gb|ADDO01000063.1| GENE 123 119929 - 120522 602 197 aa, chain - ## HITS:1 COG:PH1941 KEGG:ns NR:ns ## COG: PH1941 COG0424 # Protein_GI_number: 14591683 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Nucleotide-binding protein implicated in inhibition of septum formation # Organism: Pyrococcus horikoshii # 4 180 3 177 186 124 36.0 1e-28 MREIILASQSQGRKEVLEKYTKFKVVPSNIYENKDYKDIKILTMALSFEKGISISKNYAD SIIISADTMVDMDGENIGKPKDYEDAYRILNKLRGKKHRIVTGFSIISLADNFKYTSCQE SCVEFKNFTDEELKAYLDSYEFEGKAGAYTIGGRGGLLISSIKGDYNNIIGLPIYKINEV LYKYLNVNFLWSGNGKK >gi|281296914|gb|ADDO01000063.1| GENE 124 120523 - 121032 294 169 aa, chain - ## HITS:1 COG:lin2789 KEGG:ns NR:ns ## COG: lin2789 COG4769 # Protein_GI_number: 16801850 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 3 165 4 167 180 103 35.0 2e-22 MTNRKLIFLSLLTSFGIILGLFESQIPLPVAIPGARLGLSNIVVLVTIISIGYKEGLIVA LLKTVILVLVSGQVTAFFYSFAGALLSCFSMILSHKFLSKYLSLVGISEIGSFFHNLGQI LVASLMLKSLTIMTYLPLLVIIGIFTGYFVGISAIFMEKHLNKIKFKVV >gi|281296914|gb|ADDO01000063.1| GENE 125 121029 - 121409 503 126 aa, chain - ## HITS:1 COG:no KEGG:CPE2225 NR:ns ## KEGG: CPE2225 # Name: not_defined # Def: hypothetical protein # Organism: C.perfringens # Pathway: not_defined # 35 118 33 116 123 77 47.0 2e-13 MKKADFLVIIIILLISGLVAFITGKNEFVDNKLGKKVIITVNGNVYKEIVLNEKTNEKIK IDSEFGHNVVVIKDQKVYIEESDCKEKICMKKGKISLVGDSIICLPNRLLIKIVSDKEKG LDVILR >gi|281296914|gb|ADDO01000063.1| GENE 126 121492 - 121761 255 89 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227486716|ref|ZP_03917032.1| 30S ribosomal protein S20 [Anaerococcus lactolyticus ATCC 51172] # 1 84 1 84 85 102 60 8e-21 MANIKSAIKRIQVAKRNELQNKYRSTQVKTVIKKFNQALDLGKLDEAKELLKDVDKKLKT AATKNVIHKNQASRKISRLTKKLNNKLVG >gi|281296914|gb|ADDO01000063.1| GENE 127 121879 - 122889 722 336 aa, chain - ## HITS:1 COG:CAC1273 KEGG:ns NR:ns ## COG: CAC1273 COG1466 # Protein_GI_number: 15894555 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, delta subunit # Organism: Clostridium acetobutylicum # 1 331 2 338 343 92 24.0 9e-19 MNYKEIYRKKDLSGAFLFSGKEKLLMENTCTYLINLFTSEAMRSFNLIYFKAEECSLANI EEACQTFPLMDKKKIVIVKDSLNFISSNNLEKSFYDFLDNLPDFIILIFLERDAINKTTK FYKYFSKKGTNVDFAKLSPQEVSRFVNSYFLRKNKKIKPAQISYFLSLTSYNLKNSNVSL LDLKNEMDKIIGFSKDEFINNSDIDLLTDKVVDANIFKLLDGLYARDRDFALNELKNLYD ENEPMAKIFVMIVRQVRLLLAYKVLKNKNSSSSDIMNKLSIKKFEFSKLQNYSSNFKMEF LRDFYDELLKSDRILKSTNIDPLLEMENLIIKYTRK >gi|281296914|gb|ADDO01000063.1| GENE 128 122867 - 125068 1344 733 aa, chain - ## HITS:1 COG:BS_comEC_2 KEGG:ns NR:ns ## COG: BS_comEC_2 COG2333 # Protein_GI_number: 16079611 # Func_class: R General function prediction only # Function: Predicted hydrolase (metallo-beta-lactamase superfamily) # Organism: Bacillus subtilis # 453 685 17 278 307 129 32.0 2e-29 MYLLIVISAIILGIFSKNLYIYFIISPLILFIKENKIKYLYILFILVLVSTALRKPADVN FYGNIIGKVISTKEDRFVVKTHRINNKKIKKNIVFYGKEKNGRLVSIDGVFKRPLGQMNR GNFNKRLNYLSENINYIGQIYHEDVLKEGDLISTFVYNFREKLKDNIYDNLPKKEAGILS SILLSDRAYLDEDDLDNFSYFGINHILALSGFHIAILAIFLEKIFLKLSSSKKLSDFLSL FLIGFYIFLVGFPVGALRAYSFLFFYKLRFYLRLNIDRKEILHITGLIMLLINPYSLFSL SFLMSYGAVIGIFYIYPRLIIKCPKKNFVVESFVLTFSVLLVIFPIINTYFSGVNIIVFL ANLIIIPLYSLVIILGYFLSIGFSFLSVFIDILFKSIWGLENLLMVIANLKIEIFALDFN HIFLYYLLLYFLFIYSKYIKIFYGARKFFYIYMAWLMIFSCISFYKSYNSLKEIHFYIGQ GDASLISYRGKNFLIDVGGARRENKIFENFLYPALKNLGIKKVDAIFISHFDEDHAGNLD KVLENFKVGKIYSSYDDNIHRLIILKKGDFYRYKDLTFKVISDSEKFQSPNDKSMVLLVE FMGKRILYTGDISQEVEKTLKVKADILKVAHHGSRGSSSSEFLKNFKAKVAIISCGIDNE YKHPHKEAIDRLRENKIKLFTTQNHEVDVIINKNFLWVGNYGKVNIDGELLYNFIFALLL GVLLKKYELQGNL >gi|281296914|gb|ADDO01000063.1| GENE 129 125171 - 125893 720 240 aa, chain + ## HITS:1 COG:no KEGG:RRC497 NR:ns ## KEGG: RRC497 # Name: not_defined # Def: alanyl-tRNA synthetase-related protein # Organism: RC-I_MRE50 # Pathway: not_defined # 4 240 5 263 390 68 20.0 2e-10 MGKIYIDSPYLKDYVVDIDHIRNINNHIYAKLVDEPCFLGTNNVKGDIFTVDNSPCNFYK PSGKEYIEISDTSKKSVNIKIDWENRLKLMQDNLAIGILRLLILSDNNLKIDKYKVEPSG SYINLLNKDISFKSIADLEELSNYLITSNLEVENKDGSINIFRLGEIDYDGPSLKRTGEI GFLIIKSVTKTLNGIRINIASGTGAYKDYRKKLDTLNNIKNYLNLKDEDEIFSAIKKLKA >gi|281296914|gb|ADDO01000063.1| GENE 130 125937 - 127280 1603 447 aa, chain + ## HITS:1 COG:TP0112 KEGG:ns NR:ns ## COG: TP0112 COG3579 # Protein_GI_number: 15639106 # Func_class: E Amino acid transport and metabolism # Function: Aminopeptidase C # Organism: Treponema pallidum # 1 444 1 442 450 390 43.0 1e-108 MKITLEKLQELKNNFSKDRANRVAQNAATTNGIFKASLHYDNNKTNLNEFNISLKKTKVA DQKKSGRCWMFAALNVMRYKLMENYNLDDFKLSKNYTLFFDKLERANYFLNTILNTMDEE VNGRLLSHLMSTDLLSDGGQWDMLKNIINKYGLVPEYAMVESHNSSNTALLDEYLQKLLR NDAMELRTAHKNGKSSSELEKMVEAYVEEIFKVLCISLGTPPEKFDFECRDKDNKFISYK NISPQEFLKDHVKMNLDDYVSLINSPTKDKPFYKSYTVKYLGNVLEGNPVTYINLPIEEL KKAVLNQLKDKEPVWFGCDVTQFLDRDNGRMDLTSVRVDDLFGIDFKMDKATRLDAHESL MTHAMVFMGLNYDEKENKIDRYKVENSWGEDAGCKGFYVMSDEWFDEYLYQVLINKKHLS KDILKALDEKPIELEPWDPMGSLAKFS >gi|281296914|gb|ADDO01000063.1| GENE 131 127334 - 128323 1014 329 aa, chain + ## HITS:1 COG:BS_yddN KEGG:ns NR:ns ## COG: BS_yddN COG2141 # Protein_GI_number: 16077571 # Func_class: C Energy production and conversion # Function: Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases # Organism: Bacillus subtilis # 4 326 6 329 339 222 38.0 8e-58 MTKLSILNLVPKYIGESYKDAYDRALKLAQFADKNNFQRYWLTEHHNSPAVISSATEVVI SYILAHTKNIRIGAGGVMLPNHSLFQVAERYACLNNLYKDRIDLGLGRAPGTDKDTARLL YKKNFSPREFINATKMLKLYFSEDVEKLDVKPYPQTREIPLYILGTSTISAHIAGKLGLP YAFAGQVSPDLIEKAFDIYRAEFIPSRQLEKPYTILSLITNIARTKEDAKDLSIKAEQIF LQIMNVKEKSEFYNLDPENAPELTSIERFLIKTNRGLSINGDVEYARKELLKINEKYKAD EIMALSFINEYEKLEDNFRILKDIVDNSL >gi|281296914|gb|ADDO01000063.1| GENE 132 128320 - 129222 635 300 aa, chain + ## HITS:1 COG:no KEGG:Apre_1219 NR:ns ## KEGG: Apre_1219 # Name: not_defined # Def: hypothetical protein # Organism: A.prevotii # Pathway: not_defined # 11 299 7 298 307 199 40.0 1e-49 MTNNKAYIKNFKFEECKDKIPYSLIHENPPIKLTSEMSVVLEYLLWYIPNINSLQSPKND LVSSIAFQDFVFGIIKEVMGLNNEDVAIVPKIERNVVNFYSKYICPDKEKIILTQADNES KTNALLRHTRNALAHGYFNIIGDLLIAFDFKNSNDYECSAIIKIKASNLLKALETLQSEV TSERLAQISLQRTGYYVEKFKSQNPQYHFDFFAKKDNYKFAVEIKKYKSYKTLPEAEVDK LVKQFENIFETMVPILFIDTSLLTEKSKDRLIREKVIILDIKNITKMLNKRDMIMEILKN >gi|281296914|gb|ADDO01000063.1| GENE 133 129352 - 129753 448 133 aa, chain + ## HITS:1 COG:no KEGG:Thebr_1802 NR:ns ## KEGG: Thebr_1802 # Name: not_defined # Def: transposase IS204/IS1001/IS1096/IS1165 family protein # Organism: T.brockii # Pathway: not_defined # 1 133 1 134 393 89 35.0 5e-17 MQNNNNMNLLGFKDVVFDSFYEDNDFIHVHASVKKMDTCPHCGSKRIWVHDRRIQNIKDT HIRGKKSLIHLKKTRFDCKFCGCRFERDLDFIAKGHTMTNRLVFAIVYEFDDIYSISSIS NIYNVSSNAILRI >gi|281296914|gb|ADDO01000063.1| GENE 134 130144 - 132480 2811 778 aa, chain - ## HITS:1 COG:no KEGG:Bsph_1896 NR:ns ## KEGG: Bsph_1896 # Name: not_defined # Def: Ig-like, group 2 # Organism: L.sphaericus # Pathway: not_defined # 566 768 670 871 871 133 39.0 4e-29 MKKGLMLVSVFSLLLLFFSPLNTIAEEKTDEKISYYFAEPNDDFETNFKLDEIITNNYWS NLKKVDVTDKETDKNGTGDCKFKIAIPNYLLAPDQTSIHKFATHKDWGGYLGLEFYSFGV IPKWSALNMMHPMTLNGPYGMGYMSQYCVLPSDTNENFKANINQFRFTQDDILTEAEVRD PVNKLKVLGDLKKKDSKDSKKIDELNVNEEFELDFSMKAPWFKRLYNSHAMHKLQIGGIH EDEAKELHDQFVKSDSQIVFTLDIPDGVKVDTTKLQAIFVDKNDTTQSTDIKKIKDLFSI NAETNNEKVGEKTKQVVVVTLRKAENNINVKRWQDFVDLIKKVDTENLLVRIKGLSVKED AKANENITINATASAMYDFATSETEKFYLNDDKHNTLFKENGKGWENSSERFYWTFAAVQ DPNGLDDALKDENKPNLISYTFKVVNGKVLYQFVSGTEGKELPKEVIDLLPTDSNKYSVG SKVKPIEPSKTEVTVGNDKWTFKGYDKKELTVEKVEDRAVAPNTFVGTWTCQEVNKPEKP DYPSHHRDFVSPLIAKGENKDNYYIHIKYLFGYPDDTIRPDGNMTRAEAIAVVARLEKLE LNDKSSDTFADTKEKAWYNTAINAAYKKGLLEEKKGQKIRPDEKITRAELAQLISHIDKI NSATAPFEDVKGHKFEAAINQAYGNKRIEGYPDGTFKPDNPITRAEVASMINKLYDRFPD KDYIDGHQKIVHAYKDLPYKSHWAYYELVEAYETHKFVRLPNNMEEWKELIKQIDKLS >gi|281296914|gb|ADDO01000063.1| GENE 135 132488 - 133249 898 253 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0424_0540 NR:ns ## KEGG: HMPREF0424_0540 # Name: not_defined # Def: hypothetical protein # Organism: G.vaginalis # Pathway: not_defined # 4 243 5 239 245 115 35.0 2e-24 MKALKKTMSLTLALIMLVGIIASTNVFAEGFEKKVVSDLTAKIEWINSKVTGNVKFDNIF PKELSNLEEKNPDEYVGKLETSVEAGDLFDGAYKLYKEKLYERRGPKGYWRNAVMFGETR DTFPNATYTVNFPENIFVDKENIKAISNSSTISKIDVSPEDHSVKFTFYLGTWNDYEGFF NLVEKELDSPNHTIDISIPFTVKANENTSKVLGTVKGNGECKLYKFGILSPKGPIIDITS PEVKCEILNPINK >gi|281296914|gb|ADDO01000063.1| GENE 136 133546 - 133905 360 119 aa, chain - ## HITS:1 COG:CAC1763 KEGG:ns NR:ns ## COG: CAC1763 COG0792 # Protein_GI_number: 15895040 # Func_class: L Replication, recombination and repair # Function: Predicted endonuclease distantly related to archaeal Holliday junction resolvase # Organism: Clostridium acetobutylicum # 5 116 5 120 122 80 43.0 8e-16 MVMNNKELGNFGESLATDFLQKKNYIILDRNYRALGTEIDIIAKDGEELVFVEVKTRRNH KFGEAYEAVTEFKMRNIIQTANVYIYKHELYNTQVRFDVIEVYINEKRINHIENAFILI >gi|281296914|gb|ADDO01000063.1| GENE 137 133899 - 134516 606 205 aa, chain - ## HITS:1 COG:BS_rnh KEGG:ns NR:ns ## COG: BS_rnh COG0164 # Protein_GI_number: 16078669 # Func_class: L Replication, recombination and repair # Function: Ribonuclease HII # Organism: Bacillus subtilis # 1 198 57 248 255 190 50.0 1e-48 MTFTAYEKDYRKKGSKLIAGIDEVGRGSLFGDVLSCAIIMKEDSNIEGVNDSKKLTAKKR KELYNKILEDSLAVGIGRADAKTIDKLNIKMATHLSMVRAIENLRDSQGNLVVPDLVLID AENIETTIFQHSIIKGDENCYSIACASIIAKVYRDSLCDKWATIYPGYGIEKHKGYGTKF HREALKAYGPSPMHRKSFMNNLKKW >gi|281296914|gb|ADDO01000063.1| GENE 138 134513 - 135346 789 277 aa, chain - ## HITS:1 COG:CAC1761 KEGG:ns NR:ns ## COG: CAC1761 COG1161 # Protein_GI_number: 15895038 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Clostridium acetobutylicum # 2 275 5 281 283 231 47.0 8e-61 MNINWYPGHMKKTIEDIERKKLITDFCIEIIDARIPFSSSNPLLNEVIKGKKKLIIFNKS DLCDENMTSKWISHYKSKDINVLKYNATKPNVNAVIKASMELMAEEIKKFKDKGINHGAL KAMVVGIPNSGKSTFINGISGRKSAKTGNTPGITKTNQWIRLNKNLHLLDTPGVLWHKFP ENVGINLAFTGAIKDEIMDRETLGLKLIERLNNIDKNILKSRYGVDTEKKPIEIMEDIGK KRGALLRGALIDYEKVSSILLDEFRKGVLGRITLEDI >gi|281296914|gb|ADDO01000063.1| GENE 139 135351 - 136169 919 272 aa, chain - ## HITS:1 COG:BS_yxeH KEGG:ns NR:ns ## COG: BS_yxeH COG0561 # Protein_GI_number: 16081006 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Bacillus subtilis # 1 271 1 267 270 97 23.0 2e-20 MFKLVSMDLDETLLTTDKKMPKDFKDFVSGCRDRGIIPIVATGREYTTAKRFVGDVNIDL ICNNGNLIRNSMDSKILYVNPISHEDLKEVYNLDKDKSCNLLLHVSGNKDIDVIYQDDGK RFIDDDYISRFGKRTATFKSIDDVSLDVLSIVFTGKNEDLFKLRDVFNKNISDKFNIHLM AMQTRAEYMLEVLQKNGDKFEGLKFYCKSKNIDLKDVVAIGDDSNDKNIIKNCGLGIAMI NAIPDVKDVAKLISKKDNNNNGAIEILKEVLW >gi|281296914|gb|ADDO01000063.1| GENE 140 136190 - 137284 1490 364 aa, chain - ## HITS:1 COG:CAC2134 KEGG:ns NR:ns ## COG: CAC2134 COG0012 # Protein_GI_number: 15895403 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted GTPase, probable translation factor # Organism: Clostridium acetobutylicum # 1 364 1 365 365 429 62.0 1e-120 MKLGIVGLPNVGKSTLFNALTQAGAEAANYPFATIEPNIGVVNVPDERLKVLSDISKSGR IVYTNIEFYDIAGLVKGASKGEGLGNQFLSNIREVDAIVHVVRCFENENVIHVDGKVDPV RDIENINLELVFSDLEQIDKRLARLEKQAKADKSLKPELELLLKVKKVLEEGKPARSLEL TDEEEKIIKNFALLTLKPVIYVANVSEEDAHNNGQDNEMVKKVKEMAEKSNDETVVISCE IESEISELSEDEKQLFLKDLGLDESGLDKLIKSSYKLLGLISFLTTGEMESRAWTIKKGT KAPGAAGKIHTDMERGFIKADIISYEDLVSQGSMAAAREKGLIRSEGKDYIMQDGDVCVF KFNV >gi|281296914|gb|ADDO01000063.1| GENE 141 137556 - 138773 1253 405 aa, chain + ## HITS:1 COG:lin2078 KEGG:ns NR:ns ## COG: lin2078 COG1131 # Protein_GI_number: 16801144 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Listeria innocua # 1 295 1 295 295 157 32.0 4e-38 MSAILIDNLTKRSRRETLLDNLNLEVLDGEFYTLLGTKDSGKETLTKILMGFLKANSGQA LIYDMDTFKESKEIKESVSFVSKEIFLPDNMRAMSVFKKTLASHNLKSTEDIDLLAKYFD FDPRYKFGEMNERERKLLQIINALIIRPRLLILDDPTNSLNADDKDLLFSHLVNINRGEG TTIFLLTDSLIEAKKYSKRIAYMYKGQIKDVEFNNEKTTYDKILKIDNYRGNLSYFTQAG ARLIKDSDAQTILYYDGDLTKLSEVIYDERLENYTLENAKLEDKLCAYYEDAKFKEIRKK DNIKKTDFAESKDISVNTNIPQENIDNDKTFIKDAPIENNIDAENNQNNKSEEIFSTSEN ANDDFQNTNVILGDKNDTSSASNQDTIVIKKGKEIDLSDKKEDQE >gi|281296914|gb|ADDO01000063.1| GENE 142 138770 - 139609 842 279 aa, chain + ## HITS:1 COG:lin2077 KEGG:ns NR:ns ## COG: lin2077 COG1277 # Protein_GI_number: 16801143 # Func_class: R General function prediction only # Function: ABC-type transport system involved in multi-copper enzyme maturation, permease component # Organism: Listeria innocua # 2 278 3 270 271 95 27.0 1e-19 MIFSMEFKNNFAKLIAWAIVIIILTGLMIAFFPLLVEPQMTSIVESLLNSLSSAPKSILG FEEGFDITSIAEYLSLVFHYIGILIYIFAMQIGANSLSKEQGSGNISYIYSNPISKSDIV TGKLCANTIVYIIFLAIIGIATFGLLCAVKTLGINQEYISNFTTFDIIESIVRIFIGLFA GGLVFMSIGFLFSSFSQSSIHADAVSTLFILLVILFTIIGKVVGGSLLTLASFLPLEVFK PYSFISANINITALGINLVLFIVFIILTYLVYNSKELKY Prediction of potential genes in microbial genomes Time: Mon Jul 18 12:59:57 2011 Seq name: gi|281296871|gb|ADDO01000064.1| Peptoniphilus lacrimalis 315-B contig00047, whole genome shotgun sequence Length of sequence - 48151 bp Number of predicted genes - 42, with homology - 42 Number of transcription units - 20, operones - 7 average op.length - 4.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 893 902 ## COG2267 Lysophospholipase + Prom 895 - 954 7.8 2 2 Op 1 8/0.000 + CDS 997 - 2958 1948 ## COG0143 Methionyl-tRNA synthetase 3 2 Op 2 3/0.000 + CDS 2970 - 3737 965 ## COG0084 Mg-dependent DNase 4 2 Op 3 7/0.000 + CDS 3731 - 4288 582 ## COG1658 Small primase-like proteins (Toprim domain) 5 2 Op 4 . + CDS 4272 - 5138 909 ## COG0030 Dimethyladenosine transferase (rRNA methylation) 6 2 Op 5 1/0.000 + CDS 5131 - 5493 469 ## COG0640 Predicted transcriptional regulators 7 2 Op 6 . + CDS 5551 - 5781 447 ## COG0695 Glutaredoxin and related proteins + Term 5798 - 5832 2.0 + Prom 5801 - 5860 9.8 8 3 Tu 1 . + CDS 6029 - 6232 185 ## gi|282883282|ref|ZP_06291880.1| transcriptional regulator + Term 6281 - 6320 6.1 + Prom 6410 - 6469 7.7 9 4 Tu 1 . + CDS 6503 - 7633 1093 ## Trebr_2438 hypothetical protein + Prom 8070 - 8129 11.8 10 5 Op 1 . + CDS 8154 - 9269 1049 ## COG0620 Methionine synthase II (cobalamin-independent) + Prom 9325 - 9384 14.2 11 5 Op 2 . + CDS 9405 - 12143 3515 ## COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase) + Term 12155 - 12196 4.0 - Term 12219 - 12264 8.2 12 6 Op 1 . - CDS 12288 - 13646 813 ## PROTEIN SUPPORTED gi|145629959|ref|ZP_01785741.1| 50S ribosomal protein L21 13 6 Op 2 . - CDS 13706 - 14641 1300 ## COG4874 Uncharacterized protein conserved in bacteria containing a pentein-type domain - Prom 14748 - 14807 13.9 14 7 Tu 1 . - CDS 14979 - 15677 800 ## gi|300814309|ref|ZP_07094581.1| hypothetical protein HMPREF9131_0675 - Prom 15715 - 15774 9.0 + Prom 15687 - 15746 7.9 15 8 Op 1 . + CDS 15807 - 16943 1054 ## COG0116 Predicted N6-adenine-specific DNA methylase 16 8 Op 2 . + CDS 16979 - 18064 895 ## COG2208 Serine phosphatase RsbU, regulator of sigma subunit + Term 18102 - 18149 -0.5 + Prom 18295 - 18354 9.7 17 9 Tu 1 . + CDS 18511 - 21078 3582 ## Bsph_1896 Ig-like, group 2 + Term 21112 - 21145 3.1 - Term 21188 - 21253 4.1 18 10 Tu 1 . - CDS 21271 - 22689 1398 ## Amet_1624 hypothetical protein - Prom 22724 - 22783 10.5 + Prom 22743 - 22802 6.4 19 11 Tu 1 . + CDS 22824 - 23750 745 ## COG5523 Predicted integral membrane protein + Term 23781 - 23823 -0.3 + Prom 23770 - 23829 12.1 20 12 Tu 1 . + CDS 23854 - 24288 693 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins + Term 24320 - 24349 1.4 + Prom 24337 - 24396 9.8 21 13 Op 1 2/0.000 + CDS 24629 - 25771 1582 ## COG1960 Acyl-CoA dehydrogenases 22 13 Op 2 29/0.000 + CDS 25786 - 26589 1250 ## COG2086 Electron transfer flavoprotein, beta subunit 23 13 Op 3 . + CDS 26602 - 27612 1437 ## COG2025 Electron transfer flavoprotein, alpha subunit + Term 27638 - 27677 6.1 + Prom 27633 - 27692 11.6 24 14 Op 1 . + CDS 27811 - 29289 1321 ## COG1020 Non-ribosomal peptide synthetase modules and related proteins 25 14 Op 2 . + CDS 29270 - 30010 829 ## gi|282883278|ref|ZP_06291876.1| acetyltransferase, GNAT family 26 14 Op 3 . + CDS 29994 - 30215 338 ## gi|282883246|ref|ZP_06291844.1| acyl carrier protein 27 14 Op 4 . + CDS 30212 - 31642 1114 ## COG1696 Predicted membrane protein involved in D-alanine export 28 14 Op 5 . + CDS 31651 - 33399 1438 ## COG0726 Predicted xylanase/chitin deacetylase - Term 33316 - 33355 -0.9 29 15 Tu 1 . - CDS 33500 - 33610 71 ## gi|300814342|ref|ZP_07094614.1| arylsulfatase - Prom 33682 - 33741 6.0 - Term 34186 - 34236 7.2 30 16 Tu 1 . - CDS 34266 - 35060 1130 ## Apre_1411 sugar-binding domain-containing protein - Prom 35088 - 35147 12.8 + Prom 35184 - 35243 9.3 31 17 Op 1 39/0.000 + CDS 35345 - 36265 1525 ## COG0226 ABC-type phosphate transport system, periplasmic component 32 17 Op 2 38/0.000 + CDS 36300 - 37202 871 ## COG0573 ABC-type phosphate transport system, permease component 33 17 Op 3 41/0.000 + CDS 37199 - 38074 679 ## COG0581 ABC-type phosphate transport system, permease component 34 17 Op 4 32/0.000 + CDS 38074 - 38829 216 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 35 17 Op 5 7/0.000 + CDS 38831 - 39457 734 ## COG0704 Phosphate uptake regulator 36 17 Op 6 40/0.000 + CDS 39462 - 40142 803 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 37 17 Op 7 . + CDS 40145 - 41824 1360 ## COG0642 Signal transduction histidine kinase 38 17 Op 8 . + CDS 41896 - 42822 1239 ## COG2070 Dioxygenases related to 2-nitropropane dioxygenase 39 17 Op 9 . + CDS 42836 - 44191 808 ## PROTEIN SUPPORTED gi|145629959|ref|ZP_01785741.1| 50S ribosomal protein L21 + Term 44208 - 44249 6.1 - Term 44189 - 44242 10.6 40 18 Tu 1 . - CDS 44257 - 45612 1894 ## COG1362 Aspartyl aminopeptidase + Prom 45586 - 45645 5.3 41 19 Tu 1 . + CDS 45854 - 46801 1241 ## COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases + Term 46851 - 46908 8.2 + Prom 46869 - 46928 11.3 42 20 Tu 1 . + CDS 47086 - 48105 1025 ## STH2580 hypothetical protein Predicted protein(s) >gi|281296871|gb|ADDO01000064.1| GENE 1 3 - 893 902 296 aa, chain + ## HITS:1 COG:SA1143 KEGG:ns NR:ns ## COG: SA1143 COG2267 # Protein_GI_number: 15926885 # Func_class: I Lipid transport and metabolism # Function: Lysophospholipase # Organism: Staphylococcus aureus N315 # 10 294 4 302 304 108 27.0 2e-23 YAWEAIANGEDFKLLCLDNLYIHGKIYKVPDPKAVVQIVHGALEHKERYMDLIKFLNKKG YSVVISDNRGHGESVNKKYPLGHINSLDQVIDDQLVINDYIKSHSDKDIYMIGHSMGSMI ARNFLKNYDYRIKKLVLTGTVTYNPLVYLAIFVGNIINFYMGFYGNSKILKRLYSSGMSE GWLSFNEENLMEAKNDKLMLESFTNRGYLTVFHAMKELKNHRAYKLKNKDLKILSITGDC DQVVGGKKGLMDTIKTLKKIGYKNVSYFIMPHMKHEVLRENNKEDVFKIIEEFFNS >gi|281296871|gb|ADDO01000064.1| GENE 2 997 - 2958 1948 653 aa, chain + ## HITS:1 COG:CAC2991_1 KEGG:ns NR:ns ## COG: CAC2991_1 COG0143 # Protein_GI_number: 15896243 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA synthetase # Organism: Clostridium acetobutylicum # 2 532 4 532 536 613 55.0 1e-175 MKKNFYLTTPIYYPSDNLHIGHTYCTVAADCIKRFKELQGYNVFFTTGTDEHGQKIATKA QEAGMEPKAYVDKIVANIKKLWESLDIQYDAFIRSTDAQHEKDVQDLFKKLYDKGDIYKG EYEGYYCTPCESFWTQAQVGDDHACPDCGRVTQLTKEESYFFRLSKYKDKLLDLLNNNEE FTEPAFRKNELIKNFIESAEGLEDLSVSRSSLTWGVQVPFDNKHVIYVWIDALLCYLSAI EFGTDKEKFNEFWPADVHLVGKEIFRFHALIWPALLMALDLPLPKKIFGHGWILFDNDKM SKSKGNVVYPEPIIKLYGVDALKYFLLREFSFGSDGSFTKEKFMQRLNSDLANDLGNLLS RTVSMITKYNNGIIEKPKIEEEIDKDLENMAISVKAKVEEAMEHFKFNVALEEIWKLIRR SNKYVDETTPWILAKDEKNKDRLNTVLYNLAESLRIISVLINPFITNTSKEIIRQLGLEE KVDWESSQKWGLIPNATKVNKGQIIFPRLDIKEEIEKLDDENKKLMESRALENSSANKDT DEKFKDEISLDDFAKLDIRLAYVESVEDHPNADKLYLLHLKIGNSRRVIVSNIKDKYTKE ELTGKKILVLCNLKAKKFRGIESKGMLLAAEDENGKLSIASTLEDLVDGAKIS >gi|281296871|gb|ADDO01000064.1| GENE 3 2970 - 3737 965 255 aa, chain + ## HITS:1 COG:BS_yabD KEGG:ns NR:ns ## COG: BS_yabD COG0084 # Protein_GI_number: 16077107 # Func_class: L Replication, recombination and repair # Function: Mg-dependent DNase # Organism: Bacillus subtilis # 1 254 2 254 255 226 44.0 3e-59 MIDSHAHLDDEAFDDDRDQVINALYENGIDFIVNIACDLKSSKTSQELAKTYENIYATVG VHPHDAITYTDEVEETLKILAQEKKVVAVGEIGLDYYYDNSPRHIQKDVFKRQLKLANEL RKNVVVHSRDASQDTFDILKEAHDKYEFKAVIHCYSQSLEMLKEYLRLGDYISLGGAVTF KNSKIRKEVAKIVPLDRLLLETDCPYMTPVPYRGKRNEPKYVNIVAEYIADLRGISKSDL VKVTDENTKRFYNIC >gi|281296871|gb|ADDO01000064.1| GENE 4 3731 - 4288 582 185 aa, chain + ## HITS:1 COG:CAC2987 KEGG:ns NR:ns ## COG: CAC2987 COG1658 # Protein_GI_number: 15896239 # Func_class: L Replication, recombination and repair # Function: Small primase-like proteins (Toprim domain) # Organism: Clostridium acetobutylicum # 5 180 2 177 185 158 46.0 6e-39 MLKHIDDVIVVEGKDDVAAIKRACDCQIITTHGFGYGYKLINQLKEVSKRKRIIIFTDSD YMGSQIRKDLAKHLPNAKHAYLSQDKSSKDGDIGVENAKPEDILKALENARAVLNKKQIE YSLKDLRENKLVDHADAAKRRKLFCDILSIGYSNGKGLLNKLNSYGISRDEFNLAIEEVN NGKTL >gi|281296871|gb|ADDO01000064.1| GENE 5 4272 - 5138 909 288 aa, chain + ## HITS:1 COG:BS_ksgA KEGG:ns NR:ns ## COG: BS_ksgA COG0030 # Protein_GI_number: 16077110 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Dimethyladenosine transferase (rRNA methylation) # Organism: Bacillus subtilis # 7 276 8 283 292 253 53.0 2e-67 MERLFKPKRVSEILKKYNFRFSKTLGQNFLIDGNIVRKIVDSAEVSEADNVLEIGPGIGT LTEELALRAKKVVSIEIDKRLEDLLEETLPYDNVKIIYKDFLKLDLKTLIDEEFKGQNFK VVANLPYYITTPIIEKLLLNSENIEIINVMIQKEVAKRFTAQPQTKDYGSLSVFIQFFCR AFYEFTVPRTVFMPKPNVDSGVCKLEVKRDLPNIDREEFFKIVRAAFSKRRKTLVNSLSQ SQLNLDKNKVTEILELSGIDTKRRAESLTLEDFLVLYVNVLKFGGFNG >gi|281296871|gb|ADDO01000064.1| GENE 6 5131 - 5493 469 120 aa, chain + ## HITS:1 COG:CAC2242 KEGG:ns NR:ns ## COG: CAC2242 COG0640 # Protein_GI_number: 15895510 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Clostridium acetobutylicum # 12 115 19 122 122 87 44.0 7e-18 MDEKLMGDLDKDFIEDVKKFTEDGDLLNSIAQIFKTLSDPTRLKILYVLSKKDLCVSDIS ELLSMSQSSISHQLALLRHQQLIKVNRVGRMAIYSLDDDHVLSIFNQGKTHAEHKKSKND >gi|281296871|gb|ADDO01000064.1| GENE 7 5551 - 5781 447 76 aa, chain + ## HITS:1 COG:CAC2777 KEGG:ns NR:ns ## COG: CAC2777 COG0695 # Protein_GI_number: 15896032 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutaredoxin and related proteins # Organism: Clostridium acetobutylicum # 4 75 2 74 76 76 50.0 1e-14 MKKVTVYTSTTCPYCQMAKEYLQEREIPYDEKNVQTDKEARSELMAMGYTGVPVICVDDQ EVVGFDKNKLDELLNK >gi|281296871|gb|ADDO01000064.1| GENE 8 6029 - 6232 185 67 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282883282|ref|ZP_06291880.1| ## NR: gi|282883282|ref|ZP_06291880.1| transcriptional regulator [Peptoniphilus lacrimalis 315-B] transcriptional regulator [Peptoniphilus lacrimalis 315-B] # 1 67 1 67 67 121 100.0 2e-26 MLKNNILEIRKKKGITQKQIANAVGTTPQFISKLELGISNPSLTKAFEISRFLECGVEEL YSFEDDK >gi|281296871|gb|ADDO01000064.1| GENE 9 6503 - 7633 1093 376 aa, chain + ## HITS:1 COG:no KEGG:Trebr_2438 NR:ns ## KEGG: Trebr_2438 # Name: not_defined # Def: hypothetical protein # Organism: T.brennaborense # Pathway: not_defined # 9 358 15 366 386 415 59.0 1e-114 MRENNKDIVLAICYDFDKTLSPNDMQAQGFIQSFDLEVEDFWNESNKLADDNEMDQNLAW MYMLTKKSRGRHIFNKDTLKDYGSKVELYPGVLTWFDRINRYGQEKGIKVEHYIISSGLK EMIEGTEIAKYFKKIYASSFYFDKDGIAVWPAQCINYTNKTQYLFRIEKGAVEVNDPKVN DYFTDDKLRVPFRNMVYIGDSDTDIPCMKLVFTNGGYSIGVHGKESKNKVFNMIEEKRIK YFAEADYSEGSDLDKLLKNIIDRTAINEILEMDHEKCLSETIDARKNQDKGHRQRENLID KLNESSTFSRTHEIIKEMKKIDTWKDSQIDRILKIGLSNSQVKYILNDKDIKEFFENICR DFNSESATKIRKLIEK >gi|281296871|gb|ADDO01000064.1| GENE 10 8154 - 9269 1049 371 aa, chain + ## HITS:1 COG:CPn0143 KEGG:ns NR:ns ## COG: CPn0143 COG0620 # Protein_GI_number: 15618067 # Func_class: E Amino acid transport and metabolism # Function: Methionine synthase II (cobalamin-independent) # Organism: Chlamydophila pneumoniae CWL029 # 8 369 11 373 374 365 50.0 1e-101 MTKKLEIARVDVVGSFLRPDSLKKAREDFEIGKITEAQLKKVEDTEIENLIEREKEIGLK FFTDGEFRRSWWHLDFFWGLQGVKKIDVKEGYIFHDEVTRAESATITGKISGENHPFVEH YKFIKKFEDKDHFARQTIPAPAQLLKEIDRNPKEEIEKIYPSRDELINDIAKAYKHVILD LYKNGCRNLQLDDCTWGMVVDKNYQDNLKKQNIDFNKEVNELLLINNKAISDLPDDLLIT THVCRGNYHSSYASSGAYDEISDLLFAKENVDCYYLEYDTKRAGGFEPLKKVSPNKKVVL GLITSKFPKLEDKGEILDRIKEASKYIPIERISISPQCGFASTEEGNILTIEEQWSKIKL LWEIAEEAFNN >gi|281296871|gb|ADDO01000064.1| GENE 11 9405 - 12143 3515 912 aa, chain + ## HITS:1 COG:FN1718 KEGG:ns NR:ns ## COG: FN1718 COG0653 # Protein_GI_number: 19705039 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecA (ATPase, RNA helicase) # Organism: Fusobacterium nucleatum # 3 910 5 869 869 808 51.0 0 MGLIDKIFGTYSDRELKKIEPLVNKVMDLEDQTAKLSDDELKAKTEEFKDRYKNGESLDE LLPEAFAVVREAAWRVLGMKPFRVQVIGGIILHQGRIAEMKTGEGKTLVATLPVYLNALT GKGVHVVTVNDYLAKRDHDWMGKVYEFLGLSVGCILHDLDGDQRREAYGADITYGTNNEF GFDYLRDNMVIYKEERVQRTLNFCIVDEVDSILIDEARTPLIISGQGDESTDLYVRARDF VNSLTSRIKTEDETNFERFNREFEEETVDYVINEKDKTSTLTDKGVAKAEKYFGIDNLSD LDNMELSHHINQALKAKGNMKKDIDYVVNDGEIIIVDEFTGRLMYGRRYSEGLHQAIEAK EGLEVRAESKTLATITFQNYFRMYKKLSGMTGTAMTEEGEFRDIYNIDVVEIPTNKQVIR KDYNDVIYRDEPAKFRAVTREIDELHKKGQPVLVGTISIDKSEELSKYLKRAGIEHKVLN AKKHAQESEIVAQAGRFGAVTIATNMAGRGTDIVLGGNPSFLAKKELKKRGMEDEMIEFA DSYFKTDDEEIIKAREDYQNLVEKFKKETDEEAKKVSEVGGLHIIGTERHESRRIDNQLR GRSGRQGDPGSSRFYISGDDDLIRLFAGDRFKNTMEKIDTPEDEPIEAGILTRLIESAQR KVEGNNFSIRKNVLQYDDVMNKQREVIYGERTRVLEGENLKDDIVAMKEDIISQTVDFYN KLDHNNTKHLDIEGLENFVEDTFDFPEEFLKGHENDSIENIKEYISEASAEKYKEKEEEF GDERFREVERVVLLKNVDSKWMDHIDAMDQLRKGIGLRAVGQVDPVRAYAEEGFDMFEQM NESIKEDTVKMLYHVINPERVKRVRVAKEVETVNPDDGKKKPFVRKNKKVGRNDPCPCGS GKKYKNCCGKNE >gi|281296871|gb|ADDO01000064.1| GENE 12 12288 - 13646 813 452 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|145629959|ref|ZP_01785741.1| 50S ribosomal protein L21 [Haemophilus influenzae 22.4-21] # 12 442 12 442 456 317 40 6e-86 MKFLDILINWANWFWGPPILILLVGGGLYLTVRLGFFQFRYFGYILKQTFGGMFKKSDGE GSVSAFAAAATALASCIGGANIVGVPVAIALGGPGAVFWMWVTALVGMATKFTEITLGIK YREKNEKGEFVGGAMYYLKNSPLPFLGPLFAFFLMIEIAPSISTQTLTFIQNVELLGISK YVGLGIFFIIVGAIVFGGLKGVARFCEIAVPFMAAFYILGGLIVIAFNLKHVPGAFATIF AHAFSPAAAVGGFSGAAVAQAMRNGIARGCYSNEAGMGTSTIAHASATVEIPAQQGLWAV FEIFVDTIIVCTVTAIVVLVSGVWTEIPSDLAATMPAQAFGAALGAGFGSTIVSVCLLLF VITTVVAIIFFGEKQAEFLFGHTVAIICRCVYMVFIVLGVVFNLETAYSLLDFLLGLVVI TNMIGVLLMGGQAVEMKNQYFKDPKYYPKANK >gi|281296871|gb|ADDO01000064.1| GENE 13 13706 - 14641 1300 311 aa, chain - ## HITS:1 COG:FN0238 KEGG:ns NR:ns ## COG: FN0238 COG4874 # Protein_GI_number: 19703583 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria containing a pentein-type domain # Organism: Fusobacterium nucleatum # 7 311 7 309 310 265 46.0 1e-70 MGGIDIKHTTNEVVMVRPKGFFFNAQTAVNNAYQHNDEADLNEVQKRALEEFNNLSDALK AKGVKVNILEDTAEPKTPDSIFPNNWFSTHEGGIMCIYPMFAENRQMEITKFKEKVVKIC KDKAKDEEFFKIFDYSENHDKNKFLEGTGSIVIDRKNKVAYCSLSPRADKNLFETWCKDT GHVGVAFESRQDGKLIYHTNIVMGIGEKKAIICLEAVDEKDRQRVKDKLIEGGNDIVELT LEQTKACAGNTLELMGSDGKSFIVMSKMAYDSLDKDQIKKIEETTEIVCVDISTIEYYGG GSARCMIAEIF >gi|281296871|gb|ADDO01000064.1| GENE 14 14979 - 15677 800 232 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|300814309|ref|ZP_07094581.1| ## NR: gi|300814309|ref|ZP_07094581.1| hypothetical protein HMPREF9131_0675 [Peptoniphilus sp. oral taxon 836 str. F0141] hypothetical protein HMPREF9131_0675 [Peptoniphilus sp. oral taxon 836 str. F0141] # 1 232 1 232 232 355 96.0 1e-96 MSSYDNRRRPYRKRRLKRKYVIRRALFVFFVFLLLVFIVKSCGRGKSNDNKDNNLNNNSV NTSSPAKETTNNSSDKSQDNHEGNLSIENENLRISDLSVEYGTYYTDSGIEKEKRILYVL DNKKAEDDLIKLLKTSIEGQIPASFAKEESSDSYINISLNPNDNLLIKSNDLFKTSYEDI DGLYKYIYLVDKSLGSDGKVKAIFITKSNLKDGIEKILKDNNIEGNEMEIGQ >gi|281296871|gb|ADDO01000064.1| GENE 15 15807 - 16943 1054 378 aa, chain + ## HITS:1 COG:BH1771 KEGG:ns NR:ns ## COG: BH1771 COG0116 # Protein_GI_number: 15614334 # Func_class: L Replication, recombination and repair # Function: Predicted N6-adenine-specific DNA methylase # Organism: Bacillus halodurans # 1 374 1 376 385 355 45.0 8e-98 MEKFKIIATTNFGLEALCKRELLDMGYNDLKVQDGRIELTGTYKDVCALNLNLRTAERIF MVVASFEALSFEELFDKVYNIDWTYFLNEDSNFILLAKSHKSKLFSLSDIQRISEKAIIK KLQNKYKKDWFSKSNERIKIEVSLLDDIATIAIDTSGDGLHKRGYRQINYKAPISETIAA SMVMLSFWNPERPLADPFCGSGTIVIEAAMIGKNIAPGLMRKFDLENFIFIPQEIFKEEK RKCYEKIDYDKKLNINASDVSYKAIEVAKNNSAILGLDEDINFFQKDIRNLDLEDNYGVL ITNPPYGERLAVKEAPELNRELGRLYKTIPTWSLYAITGSETFQKDFGKKADRKRKLYNG KIKTYYFQYYGPRPFVKK >gi|281296871|gb|ADDO01000064.1| GENE 16 16979 - 18064 895 361 aa, chain + ## HITS:1 COG:FN1091 KEGG:ns NR:ns ## COG: FN1091 COG2208 # Protein_GI_number: 19704426 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Serine phosphatase RsbU, regulator of sigma subunit # Organism: Fusobacterium nucleatum # 118 358 199 443 447 95 29.0 1e-19 MEEDYLYSQKIDHQVLNGIADPIRVLDSDERVIFVNEAMEKTLGYDRKNLLCDIDESIFN PDITRSVLRTGEVVQREEIIKDKIYSVKCSPVLGQKGQIIGVVEVFRNVTVERRLQREII ERNRSMVRETMAASQIQKTVLPDKGFIKNLKIDYIYKPSNMLSGDMFDVFEINEDNIAVY ISDSVGHGFAASMVTMFIKSLIRTLPIFILLSPSKTLDAISNRFSLLKLDIENYFTCFYG VFNIKKGIFTYANAGHLPLPLKVSEKIEYLHAEGNPISRFFKNAKYKEENSKFYAGDKIL FMTDGVSESRNLEGEVYGLKRPEEIMLENDIDELSILKDNLLSFTNITQTDDISVLLLSV W >gi|281296871|gb|ADDO01000064.1| GENE 17 18511 - 21078 3582 855 aa, chain + ## HITS:1 COG:no KEGG:Bsph_1896 NR:ns ## KEGG: Bsph_1896 # Name: not_defined # Def: Ig-like, group 2 # Organism: L.sphaericus # Pathway: not_defined # 567 855 589 871 871 143 34.0 3e-32 MKTYRKRFMASTLALLMTVSIPLTALAEGTARTESNGKKIIQKLKNDPATKGPSAEDIKN AKDALDGAINAAEEYQKTDDYKNSKESKENLINTIQAAKNAKATLEGTPSKQDVDNVTGV VNALNSYLQDLQGKIREEKAKNALEKAKKELEQAINNAETFKSDEKYTKGKAEDKTAFDG ALSAAKTAKDATDATVASLNQAKTNLVNAQEKLKNAQPQQKEADKFIPQTKALEVEKGNT VDIKTGLLNAPNDATVTIKTDVDTSEVGEKTGVLTVKFNDASTKDVNITVSVKGKTPVPS PTLVISGQKVSSNGYVSGYVKADGHAVSDVSVSFYTKDGAFVAKGKTDSNGYFEFYVGTE YYNYYNDGYYNGHKVYYDSTYGYYYKNSNNDRVYLNDYYWYGKDYRCGKSGYLLAEKLLY TTSEKAYVKGNCDYNNYYWQGSYDNKYYDYRVYPTSVSRTTSYVKGYLPNEKGRKVSVYS NDYYYDGYYSDGYYDYNGSWHYYNDSNGYYNRYNRNSNYYLGSATVDSDGYFTIYFNRSV PTSESLYYYVDGYKDGRYATAPSVSQAEAGTMLIKGKAGSYASIRVEDAKGTKIGTTTAN SNGEFSCYLDRKLSIGETIKVIASESSKYDSQTTYKVVDTSLSGQTYARVSYIKGYPDGT FKPSNNVTRAEAAQMFATLLNGGTSFGTSSVTKFADANNKWYSPAVNYIAGKGLLSGYSD GTFKPDADITRAEFAQMISGYLKAGYAGSANFKDVKGHWASDAIDKVFGNKAVEGYPDGT FKPNKTLTRAEAVTVLNAVFNRYTTSNSLKNVSSSNLKNYSDISSSHWAYYQILDASNAH VSQKVTSTSNEEVWK >gi|281296871|gb|ADDO01000064.1| GENE 18 21271 - 22689 1398 472 aa, chain - ## HITS:1 COG:no KEGG:Amet_1624 NR:ns ## KEGG: Amet_1624 # Name: not_defined # Def: hypothetical protein # Organism: A.metalliredigens # Pathway: not_defined # 4 472 2 471 471 348 39.0 2e-94 MKKKDKKKKKIMLALILLLIIPIIYSLNTKNPKGTNVSGEFKKTQADFIYDLTYTKDQKR IHEININKEEIEIIKNAKKFLLIDFFLYNDEYDKKLSTYPAQVEQMTNLLIEKKKENPQM PILFVTDPINNFYGAYEQKYLKKLRENGIELVITDLNKMRDSNPIISGPYRAYIKYLGTG GKTYINNFFKKDGPKINIRAILKLLNFKANHRKILISENKALVASANPHDPSAFHSNVAC IFTGKTIEDLIKSESIFFDKMPDTIKNYKAVDIKNSNEELRIISEGEIFNAIYKNINETK AKDQIKIGIFYLSEFRILKALGQASNRGVDVKIVADLNKDAFGIKKNGCPNRPALSELKK EHPKINIRWYKTTGEQFHTKIAYFSYKDKDPRLILGSANFTRRNLDNFNLETDVEIKMNK NSALISKFENYYDRIWNNIGGEYTQDFESGLDKNIFLRFIWKVQEKTGTCTW >gi|281296871|gb|ADDO01000064.1| GENE 19 22824 - 23750 745 308 aa, chain + ## HITS:1 COG:lin0656 KEGG:ns NR:ns ## COG: lin0656 COG5523 # Protein_GI_number: 16799731 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Listeria innocua # 178 276 78 176 345 67 34.0 2e-11 MFDIGDIKREAKAYYKKHFKSAVILLLIFAVISFFFGDSESKKPINLGLNLKTPSDYMEN YNNYRDLKFIDKSRISVGSGGAGYNFNKRHDYGYYVDMSGESVDTSQGNNEFKSLGLLGK FLSLNLFLIVSPIIFFIILCIQIFGRIFIVNPVLVGKNKALVEGLRNPEEDLEIKKLFYF FGNENYLKVCGKILLKDVFIFLWSLLLILPGIYKYFQYFFVDYILADNPDMLFNEAIDMS KKLTDNYKFNIFLLGLSFIGWYILSIFTLSIGLIFLNPYIEISYAILYKDRLEEYRKKAE VEEEFIGD >gi|281296871|gb|ADDO01000064.1| GENE 20 23854 - 24288 693 144 aa, chain + ## HITS:1 COG:SSO2778 KEGG:ns NR:ns ## COG: SSO2778 COG0589 # Protein_GI_number: 15899493 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Sulfolobus solfataricus # 2 141 3 139 139 79 37.0 3e-15 MKILVPIDGSKSSKASLKEASSLGEKLQAELIILTVIPETSIFEQYPTNFAYALEVDKAN TERAQHILKEAEKDLKDFPNKVETFYTSGNPAAQICKFSDEKEVDLIVMGNRGLGAFSRT LLGSVSNKVINQSRASVLVVKADI >gi|281296871|gb|ADDO01000064.1| GENE 21 24629 - 25771 1582 380 aa, chain + ## HITS:1 COG:FN0783 KEGG:ns NR:ns ## COG: FN0783 COG1960 # Protein_GI_number: 19704118 # Func_class: I Lipid transport and metabolism # Function: Acyl-CoA dehydrogenases # Organism: Fusobacterium nucleatum # 1 374 1 376 381 496 66.0 1e-140 MDFRMDKEHLLLQQMYRAFAENEVDPVAADVDATEEVPMENVKKLARYGFFGIPFPKEYG GQGADYLAYSMAVEELSKKCATTGVIVSAHTSLCCAPIFENGNEEQKKKYLPDLLSGRKI GAFGLTEPGAGTDASGQKTTAVLDGDEYVLNGSKIFITNGGFADVFVVIAVTDKTKGYKG ISAFIVEKGTPGFSVGEPEDKMGIRGSSTCELIFEDCRIPKENLLGREGKGYTLALKTLD GGRIGIASQALGIAEGAIDETVKYVKERKQFGKRISQFQNTQFQLADMQTKTDAAQLLVY RAASTKGNGEEYMHQAAMAKLFAAENASDVTRRCLQLFGGYGYTRDYPIERMMRDAKITE IYEGTSEVMRMVVSNWMGVK >gi|281296871|gb|ADDO01000064.1| GENE 22 25786 - 26589 1250 267 aa, chain + ## HITS:1 COG:CAC2710 KEGG:ns NR:ns ## COG: CAC2710 COG2086 # Protein_GI_number: 15895967 # Func_class: C Energy production and conversion # Function: Electron transfer flavoprotein, beta subunit # Organism: Clostridium acetobutylicum # 2 267 1 259 259 289 60.0 3e-78 MLKIVVCMKQVPDTNEVRLDPVTNTLIREGVPSIINPDDKSGLECALRLKDADPDNVHVT VLSMGPPQADVALREALAMGADDAILVSDRAFGGADTWATSCTITGALKHLDYDIIITGR QAIDGDTAQVGPQIAEHIGIKQVSYVEGLELLEDKSGVRVQRQFEDRYHVIDVKFPCLIT AIAELAEPRYMSVGKIFDAYKVEIPMWGLKDIEDKLDLSNVGLKGSPTRVKKSFPKQGKG KGVLLTDLTADEAAQAIVAKLQEKYII >gi|281296871|gb|ADDO01000064.1| GENE 23 26602 - 27612 1437 336 aa, chain + ## HITS:1 COG:CAC2709 KEGG:ns NR:ns ## COG: CAC2709 COG2025 # Protein_GI_number: 15895966 # Func_class: C Energy production and conversion # Function: Electron transfer flavoprotein, alpha subunit # Organism: Clostridium acetobutylicum # 3 326 7 332 336 333 53.0 2e-91 MSKDIYVFIEQRDNKLEKVGIELLGKARELADRLNEQVVAMLIGENVKGHSDLLIHHGAD KVIVIEDPMLKEYVTEPYAKSVFHIIKKYEPEIVLFGASSIGRDLAPRMAARIHTGLTAD CTKLDIEDESNLLLMTRPAFGGNLMATIVCENFRPQMATVRPGVMQAMDSDASRTGEVIE EKLEFTAEDMNVKIVDVLKHESKKKDITEANILVSGGRGLGGPEGFKPLEELAEVLEAEV SSSRAAVDSGWITKDRQVGQTGKTVRPELYFAIGISGAIQHLAGMEESDLIIAINKDTDA PMFEVADLGVVGNLNAVVPKLTELIKKEKALKAEIS >gi|281296871|gb|ADDO01000064.1| GENE 24 27811 - 29289 1321 492 aa, chain + ## HITS:1 COG:Cj1307 KEGG:ns NR:ns ## COG: Cj1307 COG1020 # Protein_GI_number: 15792630 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Non-ribosomal peptide synthetase modules and related proteins # Organism: Campylobacter jejuni # 3 486 5 501 502 314 36.0 3e-85 MILIDQLDEICKKFPDKIAIVDKEKKITFRELRDKARSFAFFIRENFSYENEPIMVEASR DLETIICFFAILYSGNFYVPIDCEMPYDRILSIKNTLNSKLGIYHHKNIFTDSALSFDFE KNYEIDENKLINFRRKIIDTDPCYVLFTSGTTGEPKGVVISHFMIVDLMEWLGNTLGLSH EDKIASQTPFFFDASVKDICLLLKTGASLYIMDSKIFMFPLRVVEYLNDNKISVILWSVS ALNILANSKVFEKIYPKHLRIVTFAGEQLSAAKLNIWKKYVKATYYNLYGPTEATCDCCY YKVDRDFNDGDIIPIGKACENMEVFILDGDKPANEGELVVRGRGVSYGYYNNFEMTGKSF VQNPLNSSYREIVYRTGDYVKLNDYGEIEFLARKDNQVKVMGHRIELDEIERLIYEMGLD EAAVLFDKKRETLILFYSGREITRKEFKDFILSKLPKYMCPHKFIHMESLPKSQNTKIDK KALYKLYENKEV >gi|281296871|gb|ADDO01000064.1| GENE 25 29270 - 30010 829 246 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282883278|ref|ZP_06291876.1| ## NR: gi|282883278|ref|ZP_06291876.1| acetyltransferase, GNAT family [Peptoniphilus lacrimalis 315-B] acetyltransferase, GNAT family [Peptoniphilus lacrimalis 315-B] # 1 246 1 246 246 382 100.0 1e-104 MKIKKFNNLQELDLIKKYIDYPNNDYLNYNNYVRNFENLYYINEKNLYILIKRKDYYKTY YYLKDKDEIFNAQGVFVSEIVGKNPTNDLVDIGFKLYKTRVRMRLKTREEFYSERVKFID DIDFLYRAIGTFDKYSGEILTREEIRDKILRKEFIGIDNIGFIEFEKTKFQDSILHFYVE AKLRNQGFGSEILKHYLSNIVDKKRVGVWTDFDSKAIKTYERAGFKKENLKSYVYIGGEV NNDRKN >gi|281296871|gb|ADDO01000064.1| GENE 26 29994 - 30215 338 73 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282883246|ref|ZP_06291844.1| ## NR: gi|282883246|ref|ZP_06291844.1| acyl carrier protein [Peptoniphilus lacrimalis 315-B] acyl carrier protein [Peptoniphilus lacrimalis 315-B] # 1 73 1 73 73 98 100.0 2e-19 MIEKIKEIIEDITGEKVDENTDLIEEGFLDSFDIVSLVLELNDAFGIKIEVAELLPENFS NINDIEKLVKSLQ >gi|281296871|gb|ADDO01000064.1| GENE 27 30212 - 31642 1114 476 aa, chain + ## HITS:1 COG:FN1672 KEGG:ns NR:ns ## COG: FN1672 COG1696 # Protein_GI_number: 19704993 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted membrane protein involved in D-alanine export # Organism: Fusobacterium nucleatum # 17 476 18 486 486 175 30.0 2e-43 MSFTSLSFIIFISLAFLVFKIARYKWQSLLLISILYYASYSPKAFVYLFFVIVSTYLAGL YLEKKKSKVFLSLVLLLNFGLLGLVKFTSFSLFKNIIPLGISFYIFMASSYVIDIYRKKY KAQRNIFKYALFVSFFPQMVQGPIGRYDELEGNLYGGNSNSRDISYGLLLILFGYFKKLV IADRARILTAKVFSSPDEFSGIFVFIAIIFYSIQIYGDFSGGIDVARGVAYLFGIKLPEN FKRPFFANSLTDYWRRWHITLGAWMRDYVFYPLSLSRVFAYINKKSRRTLGRKFGKYLTL SISTFVVYFIIGIWHGAGLNFIVFGIYNGLLITLGLLFEDNFKKIKDSFGISPTSKALKL FQIIRTSLLVFIGRYFTRSENLSQAIFMLKKTFMDRNFRFGQIGLKASDYLILFVSVLIL FIISYSEEKNIDVKEKILEFKPYWQFVFIFLALAYVLYFGIFSSNFTAVDFIYRNY >gi|281296871|gb|ADDO01000064.1| GENE 28 31651 - 33399 1438 582 aa, chain + ## HITS:1 COG:BS_yxkH KEGG:ns NR:ns ## COG: BS_yxkH COG0726 # Protein_GI_number: 16080931 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted xylanase/chitin deacetylase # Organism: Bacillus subtilis # 355 552 77 246 279 83 30.0 1e-15 MKEKRFNIIFLTVFFIIVSFIAFLNIYTDPFNVFGDKFFKWYTYDFTQNPRTAKIEYIKG KNYQNFIVGASGASSIPIKTLKEYTGKDYFNLFSYGADLFVAEKNVEYLLKNYNVKSIIM PLSIPSATKFNEERNSLNYYMNPYVSGESKFNFYGKYLFASPLNGIEKIKNSKKKSYVQE SFDVFNIDGSYDKSQRDIEYIGNIETYKNNYGFNKDYFHVEMSHMDEALSAIRHIKDLCR KRNVEITFILCPMYDEENQRYDKKEFETYYNKLSAITPFWDFTGTNYEYDPRFFYDPSHF RNALGKMMVERIYGNRKDFGRYIDKVSYPQYGQNKIEEKSFYIFELHHIDEKPSNDYIIT KERFENILKFLKTNKIETVSFEDIYNYVNNNGSLPDKFCILTFDDGYKSNYEIAYPMLKK YGFKATIFPIGKTMGMDKYPGTDKKIIPHFTIKEAKEMSDIIEFGSHSFWMHQSLRENNV CFRQTAKILKGESEDSYLQAFKEDSRKFKKIYREFSTKDPIVFAYPEGDYDKLSELALEE EGYKISLTSDEGKNTIVKNLPESLKKLRRVNIDENRDLEELK >gi|281296871|gb|ADDO01000064.1| GENE 29 33500 - 33610 71 36 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|300814342|ref|ZP_07094614.1| ## NR: gi|300814342|ref|ZP_07094614.1| arylsulfatase [Peptoniphilus sp. oral taxon 836 str. F0141] arylsulfatase [Peptoniphilus sp. oral taxon 836 str. F0141] # 1 36 575 610 610 68 94.0 2e-10 MPTKDARKMSTKATVTLDYSTELMEKDALNELLNNK >gi|281296871|gb|ADDO01000064.1| GENE 30 34266 - 35060 1130 264 aa, chain - ## HITS:1 COG:no KEGG:Apre_1411 NR:ns ## KEGG: Apre_1411 # Name: not_defined # Def: sugar-binding domain-containing protein # Organism: A.prevotii # Pathway: not_defined # 29 261 1643 1889 2126 63 27.0 6e-09 MKLNKKRILSFSLALLLSVGPMTSNLFAQSSDQNTKKEEINDVKIADKKVTEKADIKQVK NALTALKDAENKLKVTNISKLKAEILKDKEVRANKYFNKATQKDKANYENALAAAKSIST DEKASEEQIANAIFGLEDAQKSLSNDYAGLILRRISYENELRNSNSYKNADKKSSSNWES ALAAAKSVAKDKIASKSQRQNAYYDLLEAEEKINVRDIFDLKEMIKEENKIRNSNEYKNV DKKLSSNWENALAAAKATVDDYEI >gi|281296871|gb|ADDO01000064.1| GENE 31 35345 - 36265 1525 306 aa, chain + ## HITS:1 COG:SP2084 KEGG:ns NR:ns ## COG: SP2084 COG0226 # Protein_GI_number: 15901900 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, periplasmic component # Organism: Streptococcus pneumoniae TIGR4 # 1 306 1 291 291 204 44.0 2e-52 MNLKKLGKLAIVIGLATTLAACGASKDSANNKSANTSTEGNKTETASADLSKINVISREA GSGTRGAFTEITGVLEKKDGQEVDNTTEEAAVQNSTDAVITTVSNDPASIGYISLGSLND TVKALKVEGVEATPENVKSGEYKIARPFNICYQEGADEKALDLLKFIESDEGQKIVEAEK YIPEVSGKTYTAIDNDAHITIAGSTSVTPLMEKLVEAYKELNPKFEADIQATGSSAGIQS AIDGTAQIGMASRELKDEEAPKVKVDVIARDGIAVIVNKENPAEDVSLASLKDIFTGSMT QWSEVK >gi|281296871|gb|ADDO01000064.1| GENE 32 36300 - 37202 871 300 aa, chain + ## HITS:1 COG:SP2085 KEGG:ns NR:ns ## COG: SP2085 COG0573 # Protein_GI_number: 15901901 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 14 296 2 283 287 287 56.0 2e-77 MDQTKKAVQSKNQTKLFSKEEVFKYFFLLCSILSIFFLLLICIFIFKDSISFIAKIGVKD FIFNSKWTPLNKPASYGILSTVIGSLVITTVSCVCAVPLSIMASSYLAFDCPKRIYKFLK PGLNLMAGIPSIVYGFFALNIIVPINRAIFGGDGMNMLSASILLMIMVLPTIISMSEASL RTVPKSYYEGSLSLGATHDETLTRVMIPAARSGIFAGVILGVGRAIGETMAVILVAGNQT RVTFNLLKGIRTMTTNIVMEMGYASGTHREALIATSAVLFIFILCINIGFFYMKKRGEKR >gi|281296871|gb|ADDO01000064.1| GENE 33 37199 - 38074 679 291 aa, chain + ## HITS:1 COG:SP2086 KEGG:ns NR:ns ## COG: SP2086 COG0581 # Protein_GI_number: 15901902 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 37 288 16 267 271 238 61.0 9e-63 MIYLLGFILALVGLSIALHIFGKISYYKIFSRFSIIFTFGMLMLIVVFVIVKGLFSFKLS MLSLHYTTKNVSMGPAIVTTVITVLMAILIASPIGIFTAIYLVEYTDVESKLVQTIRLAT ETLSGIPSIIYGLFGMLFFGMVLKFGYSIYSGAFTVAIMILPIIIRATEEALKSIHPSIR QGSYALGAGKLRTIFVVVLPIAIPGILSGIILSVGRVIGETAALMFTLGTSTAMPRSLRS SSRTLALHMYMLSSEGLYVGEAYATGMVLLILVLIINSISSKLAGKLMGVK >gi|281296871|gb|ADDO01000064.1| GENE 34 38074 - 38829 216 251 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 1 242 1 231 311 87 27 1e-16 MEEKIKVEDLDLFYGDFQALHSVNLDVRENEILAFIGPSGCGKSTLLKCLNRMNDLVVAC KIEGKVTLDGQDIYAKNYDVNNLRKRVGMVFQQPNPFPMSIYENIAYGPKTHGVKNKAKL DEIVESSLKQAAIWDEVKADLKKSALSLSGGQQQRLCIARAIAVNPEVILMDEPTSALDP VSTGKIEDLAQDLKENYTIVIVTHNMQQASRISDKTAFFLNGVIVEQGSTLDIFQNPKNE KTEKYITGRFG >gi|281296871|gb|ADDO01000064.1| GENE 35 38831 - 39457 734 208 aa, chain + ## HITS:1 COG:SPy1240 KEGG:ns NR:ns ## COG: SPy1240 COG0704 # Protein_GI_number: 15675200 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate uptake regulator # Organism: Streptococcus pyogenes M1 GAS # 1 204 2 208 217 113 32.0 2e-25 MRERFDKDLDKLNNLLLEMSMLIENAIKKSISLFKEKDEKVAQEVYNYEERIDIYESIIQ KHCLKLFVEQQPAAGDLRRVSSALKMITDMERIGDNARDIAEICMILPDGYDEKFPIIYK MATATIDIVNNSINSFVNGDLEVAKKIDREDDIVDNFFVSIRDQLVDEIKNGFDPAAAID FIMIAKYLERIADHAVNIADWVIFSIEG >gi|281296871|gb|ADDO01000064.1| GENE 36 39462 - 40142 803 226 aa, chain + ## HITS:1 COG:CAC1700 KEGG:ns NR:ns ## COG: CAC1700 COG0745 # Protein_GI_number: 15894977 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Clostridium acetobutylicum # 3 220 6 225 232 172 45.0 5e-43 MIVYVVEDDTSILKLIEYSLKSKGYEVSCFENGKDFFNQLSLKLPSLVLLDIMLPDIDGI EILKRLKANPMTAGIWVMMITAKTGEYDIISALDLGADDYIKKPFSVMELLSRVGAIERR ANTTNSNEKFIKFNGIVIDNLKRLVTIDEKVVNFTFKEYELLKYLILNKDIVISREKLLT YIWGYDYEGETRTVDMHIKLLRDKLGDKRKYIKTIRGVGYMLSSKE >gi|281296871|gb|ADDO01000064.1| GENE 37 40145 - 41824 1360 559 aa, chain + ## HITS:1 COG:CAC1701 KEGG:ns NR:ns ## COG: CAC1701 COG0642 # Protein_GI_number: 15894978 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Clostridium acetobutylicum # 49 553 51 563 566 214 28.0 4e-55 MKRRVLKYLVLISFLVLFLSTISSLFVYYNNYSKVEQENLFKMCHILKIGADREEDKLSY LEELSKNTKSFRISLIDKNGQVLFDTYENPKFLPTHKDRPEFQNAKKFGFAQSKRFSTTL STDSYYVSFLLNNDQVLRLSKEVDSIMGAFLKILPLLLTISFAIFLIGILVASHFTRKTL EPLINVKGSLTDFNIDEFPEISPFIMKINSQNELIEKNLRQIKREKDTIETILSNMKESL VIIDENRRLLSVNKSALNLFNSSNNIIGKNILNLIRDDSILKFVEEALSGKNSEEIIKIG TREYKSYVNPVFEATNVRGVILLFIDETESIRALRLRDEFSSNVSHELKTPLTSICGFSE LLANNMVDSDETKKEFYQLIYRDSKRLLNLVEDIMKISGLEKEATFVREDINLRELIEEI FKTQKIEIEKRNIKTKLVGQGRVYENKTMMWELFSNLINNGIKYNKDNGNLDVLIKEDND KVFVEVVDSGIGISSDDLERIFERFYRVDKSRSKKIGGTGLGLSIVKHVLSSIDGDVEVS SKMGLGTKFTLSLYKNRKE >gi|281296871|gb|ADDO01000064.1| GENE 38 41896 - 42822 1239 308 aa, chain + ## HITS:1 COG:lin0810 KEGG:ns NR:ns ## COG: lin0810 COG2070 # Protein_GI_number: 16799884 # Func_class: R General function prediction only # Function: Dioxygenases related to 2-nitropropane dioxygenase # Organism: Listeria innocua # 1 297 1 298 309 257 50.0 2e-68 MNINNILNIKYPIIQGGMAHISTAEFAAKVSELGALGQIASGGFTAEQVRSGIKKIRTLT DKAFGVNVVILNKDIDKLAEVVIEEKVDIITVGAGNPKPYMKKWIDAGIRVIPIIANIKM AKSVEALGASAVIFEGAEAGGHIGSLNTFPELPAIVDSVNIPVICAGGVYNGKHMFAAEV LGASGVQIGSRLLVAEETPIDEAYKKALIEGKDSDTIVTGITTKAPVRVIKNELAKRLNE IEIGSKDMDEFFKLATGSTKRAVDGDIDMGSILCGQGIYYLNKIESLKEIIENLMKDYLQ VKKTWNCN >gi|281296871|gb|ADDO01000064.1| GENE 39 42836 - 44191 808 451 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|145629959|ref|ZP_01785741.1| 50S ribosomal protein L21 [Haemophilus influenzae 22.4-21] # 1 445 1 445 456 315 39 2e-85 MRIIDTLVKISEWLWGLPLLIILVGGGLFLTFRLGFFQFRYLPHILKHTFGSMFKKSEGE GTVSAFQAATTALASSIGGSSIVGVPVAIALGGPGSIFWMWVTALVGCATKFTEIVLGIK YRKKGVDGEYVGGAMYYLKSSPIPILATIFAFMLMIEIAPSISTQTLTFIQNCENLGLNK YISLAALLVVVCLVIFGGIKKIASFTEKLVPLMAMLYIVGGLIVIFYNFREIPGAFLSIF KNAFTPTAALGGFAGASLSEGIRNGIARGCYSNEAGMGTATTAHSSASVEIPAQQGIWAV FEIFSNTMIVCTVTALVVLVSGAWIKVSPQMAATMPAYAFQTVLGKTIGGGFVSIALLMF VLSTIIVIIFFGEKQAEFLFGHKFSIIMRFIYIGFIILGLLLNLEQLYSLLDLMLAFVVI PNMIGIILMSNEAVELKNEYFYNPKFYPGKK >gi|281296871|gb|ADDO01000064.1| GENE 40 44257 - 45612 1894 451 aa, chain - ## HITS:1 COG:CAC1091 KEGG:ns NR:ns ## COG: CAC1091 COG1362 # Protein_GI_number: 15894376 # Func_class: E Amino acid transport and metabolism # Function: Aspartyl aminopeptidase # Organism: Clostridium acetobutylicum # 2 450 11 463 465 475 50.0 1e-134 MNIWENIDKKTYDEIFSYSEDYKNFLNKGKTEREVCAFMEKAAREKGFKSLEEYKDGLKR GDKILFNNKNKSLVLLVLGENLEDGLHIVGSHIDSPRLDIKQRPMYEDTGICYLKTHYYG GIKKYQWPTIELALHGFFIDRSGQKHNIVIGEDENDPVFYINDLLPHLAKDQIKKTADQV ITGEALNVVIGHSKFGVKDEKDGLKNNLLKILKEKYNFDEEDFKVAEFEVTPAAKARDVG LDRSMICGHGQDDRICSYANFRAILDVENPKKTAVALLVDKEEIGSVGNTAMSSAYFEIF LGEILEKMNNYSDLKLKKALYNSKVLSADVAAGLNPDYKDVHDEKNAPILGHGICMIKFT GVRGKGGSNDANAEFLYEIKELFNRENIIWQTGELGKVDQGGGGTIAYILAEHGAEVVDM GPAVLSMHAPIELSSKADAYMTYKAYKAFMK >gi|281296871|gb|ADDO01000064.1| GENE 41 45854 - 46801 1241 315 aa, chain + ## HITS:1 COG:AF0813 KEGG:ns NR:ns ## COG: AF0813 COG0111 # Protein_GI_number: 11498419 # Func_class: H Coenzyme transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoglycerate dehydrogenase and related dehydrogenases # Organism: Archaeoglobus fulgidus # 1 307 1 298 527 212 38.0 6e-55 MKALIIDQMSEEIDKGLKERGIEFKKVMLPKKDELIKLIPDVDVLIMRVDPFIDKDILDA AKNLKLILVGSVGTNHIDLEECKKRNIPVMNSPGQNSNAVAELVFSKALDLYRNTVQANN EVKSGIWNKYRWIGRELRNKTMGILGYGSIGRRVAEIAHVFKMDVLAYDPYFDPKNNPYD YVKLVSLDEALKNSDVITLHLPLTKETKNMISSKQMEGMRDGTILINAARGGVIDEDALY EYIKNGKLGGANLDTLADELGTGGLDTQDVPISSKLFELDRVYMSPHIGGSTIDAQDDIG HLVLQHLDEFLKENK >gi|281296871|gb|ADDO01000064.1| GENE 42 47086 - 48105 1025 339 aa, chain + ## HITS:1 COG:no KEGG:STH2580 NR:ns ## KEGG: STH2580 # Name: not_defined # Def: hypothetical protein # Organism: S.thermophilum # Pathway: not_defined # 23 162 180 323 329 83 29.0 2e-14 MKKIINYLLLITLILSTVLPVFAAENKSDAMKSSQKVVLDGKEVNLPAYLISNKNYIKLR DFAAILNATTNKFSLSYDANKKVVVIKNNESYAKVADDLKAIEKDKNKAILSTTEVIVNG KSQKIASAKIDGYNYLQIREVSKLVGVDIKYDEKTKTVELLTKKVAENVPLKCDNPSCGC KHNTMDEFNNCPCCGHKNNTSNDSAKSSSGHSCSCGKKMKDSNSSNSSMMHESVNNDGDY YNCGCSCHHKTLEECKACPCCKGKDIYKNGKLFEKADGTKVEDTTNSKNTEKKKKQKLNQ KLNQKLNQKLNQKLNQKLNQKLNQKKIFTTVDVVVIIKH Prediction of potential genes in microbial genomes Time: Mon Jul 18 13:01:17 2011 Seq name: gi|281296869|gb|ADDO01000065.1| Peptoniphilus lacrimalis 315-B contig00008, whole genome shotgun sequence Length of sequence - 3245 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 2907 3240 ## COG4870 Cysteine protease - Prom 3043 - 3102 9.4 Predicted protein(s) >gi|281296869|gb|ADDO01000065.1| GENE 1 3 - 2907 3240 968 aa, chain - ## HITS:1 COG:MA2507_1 KEGG:ns NR:ns ## COG: MA2507_1 COG4870 # Protein_GI_number: 20091338 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Cysteine protease # Organism: Methanosarcina acetivorans str.C2A # 99 475 130 456 526 107 28.0 2e-22 MQKLSRKIMSMVLALLMIISILPANVFAEGSVNYSNKEDGKVHFEKSKVIEAVRNPAYDY YLKHKEEFPYGYIPEEYIYPAEKVSGRRVKRDIDEPLPEKYDESRKNGIITPVRDQQQTG TCWAHAALSTIETLLIKEKLADKDINLSEGHMALNVNYDVSLTSGGDNHFALLYFSRLRG PVEEKNYPNYSIKGEDVVGTATILKMSDADKKNHEYHVLNMIIKKATTDNIKKCVMDYGS VAAGYWDDTNLEGGNKGYATDELDGRKKYHYVKTVKGELNEVKGTIMVTNHAVTIVGWDD SIKITNKNNEKAQGAFLVKNSWGPKWSKDGYGWISYDSFTAGTLDNIKVFTDVDKKIDGL SNLYTYSKNYLKFKGIGRPDKSSAINIYDRVKDKSEEITAITLYNINDGPTTFKIYATEN DDLINIVDSGSIDSQIKKRCIEEKSGWTELKTESVKEQGFYTVKLDEPFKLTKGKFALKL ETDGGKFLSCEKESKESGKTFTYSATYGEKKLFTEEENNLHLSAITRTVKETAMTIEGQD NFEVKEGYDVASIDPFTFTIKNTGNVELNNLNISIEGKDKDRFTILDADKIIKKLGVGES IEVKVKPIANLSVDDADKTFNASLKLSADEITEAKTKGFSFTVKIDTDKRAKELSDSKTK ALEDIRGLKYLSEQEKTTFTNNINNAENVSSLKSIVENAKKINLTKAKNEAKEKINKLNY LMAGDKNTSKDKIEKATSVESVEEELNNAKLFNEREKVKKQINELKNLDKEKKDEYISSL ESKNTIEDINGVYTTAKAKDDEIKEQKEKDNLANKKNELGNKISEAKKLIKSDNLSDLAK ELSVEITSAESLLKIENLTMAKVEEAIGKIQGKIELYNNFKKAKENAKNEITNMNDLYKD EKDTFIGQVNSAKNIEEIEKVKEDAKSKNKANKATKEALVKAKDKAVETINSLSNIDSEK EGFIDEIK Prediction of potential genes in microbial genomes Time: Mon Jul 18 13:01:22 2011 Seq name: gi|281296854|gb|ADDO01000066.1| Peptoniphilus lacrimalis 315-B contig00038, whole genome shotgun sequence Length of sequence - 16009 bp Number of predicted genes - 15, with homology - 15 Number of transcription units - 9, operones - 2 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 194 303 ## gi|282883297|ref|ZP_06291893.1| conserved hypothetical protein 2 2 Op 1 13/0.000 - CDS 262 - 555 349 ## COG1343 Uncharacterized protein predicted to be involved in DNA repair 3 2 Op 2 12/0.000 - CDS 556 - 1587 711 ## COG1518 Uncharacterized protein predicted to be involved in DNA repair 4 2 Op 3 2/0.000 - CDS 1584 - 2237 602 ## COG1468 RecB family exonuclease 5 2 Op 4 . - CDS 2239 - 3093 1007 ## COG3649 Uncharacterized protein predicted to be involved in DNA repair 6 2 Op 5 . - CDS 3114 - 5069 1598 ## SZO_14410 CRISPR-associated protein 7 2 Op 6 . - CDS 5083 - 5787 712 ## MGAS10270_Spy1371 hypothetical protein - Prom 5830 - 5889 6.3 8 3 Tu 1 . - CDS 5955 - 8516 2150 ## COG1203 Predicted helicases - Prom 8587 - 8646 11.6 - Term 8638 - 8669 1.0 9 4 Op 1 . - CDS 8675 - 9031 251 ## COG0239 Integral membrane protein possibly involved in chromosome condensation 10 4 Op 2 . - CDS 9028 - 10368 1822 ## COG1686 D-alanyl-D-alanine carboxypeptidase - Prom 10393 - 10452 8.3 + Prom 10274 - 10333 8.5 11 5 Tu 1 . + CDS 10499 - 11059 700 ## COG1705 Muramidase (flagellum-specific) + Term 11111 - 11156 1.1 12 6 Tu 1 . - CDS 11049 - 11750 575 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) - Prom 11952 - 12011 10.5 + Prom 11694 - 11753 7.5 13 7 Tu 1 . + CDS 11810 - 12520 547 ## gi|282883293|ref|ZP_06291889.1| hypothetical protein HMPREF0628_0993 + Prom 12567 - 12626 12.4 14 8 Tu 1 . + CDS 12652 - 14241 2056 ## BpOF4_05905 peptidase M14 carboxypeptidase A + Term 14244 - 14291 5.1 + Prom 14341 - 14400 9.7 15 9 Tu 1 . + CDS 14422 - 15987 1639 ## COG5279 Uncharacterized protein involved in cytokinesis, contains TGc (transglutaminase/protease-like) domain Predicted protein(s) >gi|281296854|gb|ADDO01000066.1| GENE 1 3 - 194 303 63 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282883297|ref|ZP_06291893.1| ## NR: gi|282883297|ref|ZP_06291893.1| conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] # 19 63 1 45 45 82 97.0 8e-15 VGKIHKQLFCPLISIHAPVKGATTFRVTKDENLGKISIHAPVKGATAFFRHSMTYKMQLV HLL >gi|281296854|gb|ADDO01000066.1| GENE 2 262 - 555 349 97 aa, chain - ## HITS:1 COG:SPy1561 KEGG:ns NR:ns ## COG: SPy1561 COG1343 # Protein_GI_number: 15675453 # Func_class: L Replication, recombination and repair # Function: Uncharacterized protein predicted to be involved in DNA repair # Organism: Streptococcus pyogenes M1 GAS # 1 97 1 97 97 124 58.0 6e-29 MQVLITYDVETVTSEGRKRLRQVAKICTDYGQRVQNSVFELNIYPKDLVNIKNKLQNIIN PEKDSIRIYNMGKNWERRVESLGKDETYNPESDLLML >gi|281296854|gb|ADDO01000066.1| GENE 3 556 - 1587 711 343 aa, chain - ## HITS:1 COG:SPy1562 KEGG:ns NR:ns ## COG: SPy1562 COG1518 # Protein_GI_number: 15675454 # Func_class: L Replication, recombination and repair # Function: Uncharacterized protein predicted to be involved in DNA repair # Organism: Streptococcus pyogenes M1 GAS # 1 341 1 341 341 372 50.0 1e-103 MKKLLNVLYVTSPDYYLKKEGRNIVISLEGKRVARYPIHILRQVVCFNYMGVSPDLMKMC MEENVSISFFTPYGKYCGRVVGASYGNIYNRKRQYKLAESEESLQFVKNIIYAKAYNSRK IIIRGKLDHKDKIDLEKVENVISNIKDLMIQIQYSPDKDSIRGIEGTIARQYFSVLDEFI VKQREDFYFIERTKRPPRDRFNAMLSFMYSILTNSIASALEGVGIDSYAGFFHTDRPGRV SMALDIIEEMRAFIIDKFCLSMINLNRINKNNFEIKENGACLLNDKGREIILQNWNKKQQ EEILHPFLEEKIKIGLLPHVQAQLLNSYIRGDIENYPPFMIGG >gi|281296854|gb|ADDO01000066.1| GENE 4 1584 - 2237 602 217 aa, chain - ## HITS:1 COG:SPy1563 KEGG:ns NR:ns ## COG: SPy1563 COG1468 # Protein_GI_number: 15675455 # Func_class: L Replication, recombination and repair # Function: RecB family exonuclease # Organism: Streptococcus pyogenes M1 GAS # 4 212 5 213 224 248 55.0 6e-66 MNQEDDYLMLSGIQHFLFCKRQWALIHIAQVWTENTYTAEGQIVHKKADQPFLKEKRKDI IISRAMAVSSKKLGLTGILDVIEFHKDENGIELKNKKGKWKPVIVEYKRGQKKKYDYDNV QLMAQAMCIEEDFDTSLEYGYIYYHKTDTREKVEFTKELRDLTIKSAELMHQFYKKRYIP KAEYYKNCRLCSINEECRPRLSKKVKNINNYIYGAQL >gi|281296854|gb|ADDO01000066.1| GENE 5 2239 - 3093 1007 284 aa, chain - ## HITS:1 COG:SPy1564 KEGG:ns NR:ns ## COG: SPy1564 COG3649 # Protein_GI_number: 15675456 # Func_class: L Replication, recombination and repair # Function: Uncharacterized protein predicted to be involved in DNA repair # Organism: Streptococcus pyogenes M1 GAS # 1 284 1 282 282 326 56.0 3e-89 MINNKVDFIFTIEVIGANPNGDPLTGNMPRVDNRGFGEISDVCIKRKIRNRMQDMGNEIF VKSLDRSDDGFRSLQKRFENVFDKNVSDEEVEKSSNQKWMDVRFFGQVFTYQNRSLGIRG PVSISVGKSIEPIETTTMQITKSISGMEPKGGKSRSADTMGTKHFVDYGIYIVNGSINSY FAEKSGLDEKDVETLKECLKTLFINDVSSARPDGSMEVKDIFWFTHSTKVGDVSSGKIKE LIKYDLPDTETLKAKYKDYNIRVDEEKLKEYEEIGLKYEHLEGL >gi|281296854|gb|ADDO01000066.1| GENE 6 3114 - 5069 1598 651 aa, chain - ## HITS:1 COG:no KEGG:SZO_14410 NR:ns ## KEGG: SZO_14410 # Name: not_defined # Def: CRISPR-associated protein # Organism: S.equi_zooepidemicus # Pathway: not_defined # 1 633 1 616 627 384 35.0 1e-105 MSFLTALYKSYVYGEENDLIGLKEDGDNLILPIYHNSMKSNGKNIVEVFLDKDSNLLDAR FLKEDEIVIFPVTEDSVARSSGVSPHPIFDNFDYIIQDESKKSLAYIEGLESWISYSNNE FLIVVRNFIEKDNSFDQIIKKLFYEYKLGKNKEVIQVDRSEKKEKETSYDFSKVFMTFKI RNFVENKDVNLTENRNLQDEFIKYIKDLNKKDQSIPKIICNISGKEDYLCLKHRPLIGSA KLISQITANNENFKGRFENPDETIKIGKETSQKIILMVKSLLDGKNTCRWLGEMTYVISW FSDDITNNRELNLAKEIQISYENTSKLSPRQMRKNKTYFGDENKTVLNLYDKTTEDIVKS FTSGRKRFVDGSNYYMTIIDKVSNGRVAVKYFREIETSRLKDNLVRWQQKYHWIRYDEQK RSYEFTPSPSNIIRSAYGIEREKGLEVSKKSFEKDQYGNILAAIVEGRDMPKNIVYALEM NIRNRLNYDKCWAQVKNCALAILKDKEGIENNMLDRKDTDRSYLYGRLLALYEILEKSTY DSDTERVTNAEKLWTSFVNKPVTMNFRLRNLMLPYEKKLGLSEGYKKELLTTIKEEISQI INLLSENYDYKSSKSNSPLGPGFIFGYEAELKFINYKFLKFKENQKATNTN >gi|281296854|gb|ADDO01000066.1| GENE 7 5083 - 5787 712 234 aa, chain - ## HITS:1 COG:no KEGG:MGAS10270_Spy1371 NR:ns ## KEGG: MGAS10270_Spy1371 # Name: not_defined # Def: hypothetical protein # Organism: S.pyogenes_MGAS10270 # Pathway: not_defined # 1 234 1 234 250 240 48.0 3e-62 MVNSKYFYGKIYGDKALITTPESKSGGEKISYNVPTREMLRGILDANYFKPTIVNVVDEI RVMNKIESYTQGTRLLLKDYSSDLSAYTYLTNVCYYIKFHFEWNENREDLKGDRNFNKHE AITERSLKRGGRRPIFLGTSECSGYIDEITEEEYENDKGFYDETNLGFGLMFNGFVYPEE SGGMLKSAYAPINMINGRIKYPRPEECNIINEVTNYSFKIPELTKSADEELEDY >gi|281296854|gb|ADDO01000066.1| GENE 8 5955 - 8516 2150 853 aa, chain - ## HITS:1 COG:SPy1567 KEGG:ns NR:ns ## COG: SPy1567 COG1203 # Protein_GI_number: 15675459 # Func_class: R General function prediction only # Function: Predicted helicases # Organism: Streptococcus pyogenes M1 GAS # 9 848 4 799 802 436 35.0 1e-122 MVENKFDNLFAHMDQKDPKRRQRLISHLINTAEESRKIGEKVGLGNLCYIVGVLHDIGKI KEDFQNKLKGNSSKKVDHSSLGGVFILKLLNDYEENYDLKEWDKLNNIFNADEFAVDEFD YYNNILIYSIMSHHGQYNMVRKNKEGEYIYTNKYREIKEKKENKNLDEDFICYIKYLEKN NIFLKDIYIEGFKEYLKIIKKLRNLTIRTSEKKLEAFYFYKTLLIRLVVSILKSSDIKDS INSYEKIIKDEDLIEKENLIKKFEENINRKYQSFGKAQTKINKIRNKISNKIFERSKEDT GGIYRLNLPTGAGKTLLSLRYGINQMRYQTKERFIYVTSYLSVLEQNASEIKTILNNDDY VLEHHSNVVEYDEKSYDEDDDSFESIRKKYLLDDWSSPVILTTMVQFFNSVLKGKSSNLT RFKSLINSVIILDELQSLPTEVIYLTNLFLNFMKVVMNSNIVLSTATQPIYDDINLKHRL DYGDAFNKNTDIISLTGDDEKTFERVKLKLYKNPREEYSIEDLKYLILENKDKSTLIILN TKSVVKKLYELIEEDYSEKDLYYLTTNLTAYHRLEKIAEIKNRLKAGDKICVVSTQLIEA GVDVDFDFVVRSLTGMDSIIQAMGRCNREGKKEEAFTYIIKLHKEIEKTSMLKGIDDRKM ACDAILDEVKKEQNIEKLVNDYFGKLYANLKEKDLIGILNLLSLNKNMKEEIIKFCKNNP DNPYISCRDDKYVEDRESTLGLNLFQSFKEAYDGFQLIDNSQKTAVVMYKETEDSINRIR CLEDDFKETYNMNILKEIKKLIKFLSRHTVVVNEKDLTYCENILDGMIYVVPEIYYSKKF GLDFENTSGLLSH >gi|281296854|gb|ADDO01000066.1| GENE 9 8675 - 9031 251 118 aa, chain - ## HITS:1 COG:AGc2712 KEGG:ns NR:ns ## COG: AGc2712 COG0239 # Protein_GI_number: 15888794 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Integral membrane protein possibly involved in chromosome condensation # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 1 116 2 120 125 65 40.0 2e-11 MNILAVSLGGALGSISRYLLGFIPIKIYDNNIITIIINILGSFLIGLIVATSLKSSISEF KINFLKTGFCGGFTTFSTFSLEIFDLLEKGKIILALSYLLSSVIFSLIAIYFAFKLVK >gi|281296854|gb|ADDO01000066.1| GENE 10 9028 - 10368 1822 446 aa, chain - ## HITS:1 COG:BH1535 KEGG:ns NR:ns ## COG: BH1535 COG1686 # Protein_GI_number: 15614098 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanyl-D-alanine carboxypeptidase # Organism: Bacillus halodurans # 78 433 30 379 387 156 29.0 8e-38 MRRFTALFLLGIILILNINVFAQKDVSIDKNTSVKATEEAKEEKKEIRDQNILVPTKDGV QKATAEEAGKIEEYEKYSLEELSKSYLLGDYQSGKILEAYNIDEVRPMASTSKLVSIFVV FDKIKDGTISKSDELTIDRESSLLGGSTFKLKENDKMTVDDLIKASMVVSGNDAITALAK HISGSVEAFSVLMNKKCKDLGLKNAHMVNPTGLTNYAIEDYNKMTTREMFILSCELIKYY PEILNYTKEAYLKDEDRNFLEYNTNPILGIVPEIDGLKTGYTNASGRTVISTGLKKGIEG KSKDLRLVGIVTGCNGDWQRYVAIKRLMSKGFDNYEYTIFGTESKPIQNINVENAQDAQT PVFIKIKGYALVNKKENIKKDIKIISELKAPIEAGKKVGTIKYYSSGDLIFESDLIVKDK VYEKGILQRFVRIYEDIFKNIEREVS >gi|281296854|gb|ADDO01000066.1| GENE 11 10499 - 11059 700 186 aa, chain + ## HITS:1 COG:BS_yubE KEGG:ns NR:ns ## COG: BS_yubE COG1705 # Protein_GI_number: 16080164 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Muramidase (flagellum-specific) # Organism: Bacillus subtilis # 10 185 15 201 282 105 35.0 4e-23 MIRKGCGCLLFFPLIICVLFALFFLTFKSPNNFSDYKKEYLDETLELAQSTADRFGLFTS VVLAQSALESDYGRSLLSLEYNNYFGIKARSNEDSVVLKTNEVINGQTTSVNEAFKKYLS KSDSFNHYGKLISQSKRYKKVKEARDFREASQYLQDAGYATDNHYAEKIIAIVEKYHLGQ FDRPNF >gi|281296854|gb|ADDO01000066.1| GENE 12 11049 - 11750 575 233 aa, chain - ## HITS:1 COG:CAC1450 KEGG:ns NR:ns ## COG: CAC1450 COG0596 # Protein_GI_number: 15894729 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Clostridium acetobutylicum # 1 232 1 240 244 83 26.0 3e-16 MNFKTYGNITNEKILLLAPVLPKDQELTNILKPLNDYYLIIPDLANRDEDFISFQRDVDS IYKYCRDENIKNFKYICSFSYCSNIAIYMLERNLVKVEKAVLEGVINININFIFKKILKM KFSNYRKKIEKDEHTIEKINNLYPNMFKEIKELAENINDKSLDNFLSEVSNFKFSKIKNT SLLFIYGKKDSSLKNIEKLKKKYLQADFLSLEGIEHGNIIFKDSKTYFNLLKS >gi|281296854|gb|ADDO01000066.1| GENE 13 11810 - 12520 547 236 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282883293|ref|ZP_06291889.1| ## NR: gi|282883293|ref|ZP_06291889.1| hypothetical protein HMPREF0628_0993 [Peptoniphilus lacrimalis 315-B] hypothetical protein HMPREF0628_0993 [Peptoniphilus lacrimalis 315-B] # 1 236 1 236 236 414 100.0 1e-114 MPKSKTLLIMFISALIPLGLELFYNTNIVGEGGVLYLFMWVMINYLFLSTIISIFSSYKK ILSLPGLKIRKATYYTNMILYTLIIIFVNIYFSAMLFFPKDKLFQNLASPYVLIFLFIFY IMNLQFGNFPIKEDGQTNVYTILAKGSFKNGRDKYATVVGYYDDGIVLGDYYFPYESIKS CATAKKKIGIFIKGKDQFGTYRVNIDSLNSAARAVLILEDAAKNGKLDQNKLNFNS >gi|281296854|gb|ADDO01000066.1| GENE 14 12652 - 14241 2056 529 aa, chain + ## HITS:1 COG:no KEGG:BpOF4_05905 NR:ns ## KEGG: BpOF4_05905 # Name: not_defined # Def: peptidase M14 carboxypeptidase A # Organism: B.pseudofirmus # Pathway: not_defined # 342 515 347 523 524 90 31.0 1e-16 MKKKLISIFLVLAMLVSLVACTPNTTAYLDASKKVSSWKGSNVNAELTYNFEVTNPENGQ KVTFKLPASFKGQSEGQEKAKITVTANLKDFKAQMTKLGAKAKELKNVKDSLSFDIFVDK DRVIFSKDLFTSLSPEFAKDIKENYIELPSSYGQNQNSIKYFDSEEFKADLIDLYKTALP NFKPSTDIQVKGNTYTYKANIDDILADLSKAIELSVSNWDKVVAKLMPMLEKAQMPNELI NKEEISKFKDSYKKEDLNKTFAEIKNILKGSSINQTTTFEDNKVTQNSKITVNVENSFKF TLDMNAVTEKDENAKVVIPTDVKKLTQKDLMSIMGSNVESFVIIRVNGKVLDTPDQAKIV NNRTMIPCRSLFESLGSKVSYDKAKKEVTLKSDKNEIKLTIGKNVATVNGKEVKLDTPAT IIENKTYLPVRFVAESLGYKVKYQKEDFFSTVDLYNVEDSKLDELIKAEEKKALEEAKKS IEEAKKEDKAPANDKDVKKEEDKKESKDVSEDIKDSAKEASKLLFSVIR >gi|281296854|gb|ADDO01000066.1| GENE 15 14422 - 15987 1639 521 aa, chain + ## HITS:1 COG:CAP0003_2 KEGG:ns NR:ns ## COG: CAP0003_2 COG5279 # Protein_GI_number: 15004708 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Uncharacterized protein involved in cytokinesis, contains TGc (transglutaminase/protease-like) domain # Organism: Clostridium acetobutylicum # 340 471 1 126 132 69 35.0 2e-11 MTKKLAVLALTLVLGLGTKVNAQTFKDVNNHWAKTPIEWATENNIFKGYPDGTFKPEKTI TRAEYIKIISNLTGLNKTASLNFKDVPKNAWYRHAMENLVGLTLIKNKESLNPNLDIDRD EAFGMLGQLLPYKDQLNKLNFADNFTIKRHRDIGVLKDLGIVSGDTNNRVNPYKKITRAE VATILYNMANKSIQVDKNELERARQENKFDFDFDERFDRSIYDLFNKKLMELDKSSDRQI ASLFQTLDRQGSSFIYKKDKNFNIDTNNLISDLNRLISQSSYKMFMESCGVNNLYPSENI KCEFTYNINKGDALAIMNKINSIKMEAEGKSDYEKVKIIHDWIVNNTRYAYDEYLSKKYK ITDKITADMPLAIFKYGKGVCESYAETFDILAKEVGLSSILISGKAYGLNGLGEHAWNLV NINGKIYHIDTTWDDPISSTGGDMLRYDYFLIDDTKMSKDHTWDKGKYPKANNGCLNNNI KNENDYLNKNQYNKYNNGYNQEDNYYNNYYNQDNNYYNNYN Prediction of potential genes in microbial genomes Time: Mon Jul 18 13:02:01 2011 Seq name: gi|281296853|gb|ADDO01000067.1| Peptoniphilus lacrimalis 315-B contig00004, whole genome shotgun sequence Length of sequence - 370 bp Number of predicted genes - 1, with homology - 0 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 87 70 ## + TRNA 100 - 174 73.9 # Asn GTT 0 0 + TRNA 179 - 267 71.4 # Leu TAA 0 0 + TRNA 290 - 366 84.7 # Met CAT 0 0 Predicted protein(s) >gi|281296853|gb|ADDO01000067.1| GENE 1 1 - 87 70 28 aa, chain + ## HITS:0 COG:no KEGG:no NR:no DPLMVLGWQRPGRVSYCRFKKIYKEVVR Prediction of potential genes in microbial genomes Time: Mon Jul 18 13:02:21 2011 Seq name: gi|281296806|gb|ADDO01000068.1| Peptoniphilus lacrimalis 315-B contig00034, whole genome shotgun sequence Length of sequence - 50358 bp Number of predicted genes - 45, with homology - 45 Number of transcription units - 15, operones - 8 average op.length - 4.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 18 - 77 3.2 1 1 Tu 1 . + CDS 213 - 1088 1299 ## Cthe_3188 copper amine oxidase-like protein + Term 1124 - 1178 6.5 + Prom 1090 - 1149 5.5 2 2 Op 1 . + CDS 1189 - 2469 1321 ## COG0402 Cytosine deaminase and related metal-dependent hydrolases 3 2 Op 2 . + CDS 2466 - 3320 565 ## COG1266 Predicted metal-dependent membrane protease 4 2 Op 3 . + CDS 3313 - 4302 1277 ## COG0180 Tryptophanyl-tRNA synthetase 5 3 Op 1 8/0.000 + CDS 4762 - 7401 2857 ## COG0525 Valyl-tRNA synthetase 6 3 Op 2 . + CDS 7398 - 8702 1023 ## COG0285 Folylpolyglutamate synthase 7 3 Op 3 . + CDS 8695 - 8895 227 ## gi|282883322|ref|ZP_06291916.1| conserved hypothetical protein 8 3 Op 4 . + CDS 8852 - 9223 266 ## gi|300813252|ref|ZP_07093614.1| hypothetical protein HMPREF9131_0589 9 3 Op 5 . + CDS 9220 - 10080 214 ## PROTEIN SUPPORTED gi|88804229|ref|ZP_01119749.1| possible ribosomal protein S6 modification protein 10 3 Op 6 . + CDS 10073 - 11389 1070 ## COG0285 Folylpolyglutamate synthase + Term 11410 - 11457 0.7 + Prom 11495 - 11554 8.9 11 4 Tu 1 . + CDS 11577 - 12839 1300 ## COG0044 Dihydroorotase and related cyclic amidohydrolases + Term 12869 - 12923 4.3 + Prom 12852 - 12911 13.1 12 5 Op 1 . + CDS 12931 - 14691 1169 ## Clos_1404 hypothetical protein 13 5 Op 2 . + CDS 14692 - 15129 585 ## gi|282883343|ref|ZP_06291937.1| hypothetical protein HMPREF0628_0868 + Term 15152 - 15184 2.0 - Term 15255 - 15307 5.3 14 6 Op 1 . - CDS 15324 - 15569 318 ## gi|282883307|ref|ZP_06291901.1| conserved hypothetical protein - Term 15594 - 15627 2.2 15 6 Op 2 . - CDS 15633 - 16229 634 ## PROTEIN SUPPORTED gi|110803742|ref|YP_699619.1| 30S ribosomal protein S4 + Prom 16348 - 16407 11.3 16 7 Op 1 . + CDS 16503 - 17234 1143 ## COG0217 Uncharacterized conserved protein 17 7 Op 2 . + CDS 17238 - 17816 334 ## COG0655 Multimeric flavodoxin WrbA 18 7 Op 3 . + CDS 17875 - 18537 827 ## COG0274 Deoxyribose-phosphate aldolase 19 7 Op 4 . + CDS 18527 - 19288 649 ## COG0682 Prolipoprotein diacylglyceryltransferase + Term 19387 - 19455 13.3 + TRNA 19359 - 19435 76.2 # Pro GGG 0 0 + Prom 19361 - 19420 79.3 20 8 Op 1 . + CDS 19493 - 20128 477 ## COG1636 Uncharacterized protein conserved in bacteria 21 8 Op 2 . + CDS 20109 - 21260 1250 ## COG2843 Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) 22 8 Op 3 1/0.000 + CDS 21263 - 21952 488 ## COG4123 Predicted O-methyltransferase 23 8 Op 4 . + CDS 21949 - 22755 751 ## COG0313 Predicted methyltransferases 24 8 Op 5 . + CDS 22748 - 23692 704 ## Mahau_2210 NurA domain-containing protein 25 8 Op 6 . + CDS 23701 - 25542 1720 ## COG0433 Predicted ATPase 26 8 Op 7 2/0.000 + CDS 25542 - 27062 1357 ## COG0606 Predicted ATPase with chaperone activity 27 8 Op 8 13/0.000 + CDS 27062 - 28144 911 ## COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake 28 8 Op 9 . + CDS 28158 - 30242 2125 ## COG0550 Topoisomerase IA 29 8 Op 10 24/0.000 + CDS 30235 - 31683 1376 ## COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB 30 8 Op 11 . + CDS 31680 - 32849 816 ## COG1459 Type II secretory pathway, component PulF + Term 32987 - 33022 4.0 - TRNA 33018 - 33093 83.7 # Phe GAA 0 0 - TRNA 33129 - 33205 89.8 # Met CAT 0 0 - TRNA 33213 - 33303 64.3 # Ser GCT 0 0 + Prom 33462 - 33521 11.5 31 9 Op 1 16/0.000 + CDS 33710 - 34828 1173 ## COG1985 Pyrimidine reductase, riboflavin biosynthesis + Term 34938 - 34986 5.1 + Prom 34848 - 34907 5.9 32 9 Op 2 15/0.000 + CDS 35016 - 35471 457 ## COG0307 Riboflavin synthase alpha chain 33 9 Op 3 18/0.000 + CDS 35481 - 36686 1477 ## COG0807 GTP cyclohydrolase II 34 9 Op 4 . + CDS 36712 - 37176 740 ## COG0054 Riboflavin synthase beta-chain 35 9 Op 5 . + CDS 37170 - 37817 546 ## COG0546 Predicted phosphatases + Term 37832 - 37867 4.0 + Prom 37836 - 37895 20.8 36 10 Tu 1 . + CDS 37984 - 40074 1973 ## COG2217 Cation transport ATPase + Term 40081 - 40114 1.0 - Term 40517 - 40556 5.1 37 11 Tu 1 . - CDS 40574 - 41086 448 ## Thebr_1561 hypothetical protein - Prom 41107 - 41166 9.1 + Prom 41073 - 41132 7.2 38 12 Op 1 . + CDS 41194 - 41724 563 ## COG0634 Hypoxanthine-guanine phosphoribosyltransferase 39 12 Op 2 . + CDS 41717 - 42643 404 ## COG1266 Predicted metal-dependent membrane protease 40 12 Op 3 . + CDS 42653 - 43390 572 ## COG0846 NAD-dependent protein deacetylases, SIR2 family 41 12 Op 4 1/0.000 + CDS 43380 - 44096 704 ## COG0500 SAM-dependent methyltransferases 42 12 Op 5 . + CDS 44097 - 44993 1196 ## COG1281 Disulfide bond chaperones of the HSP33 family + TRNA 45152 - 45236 60.9 # Leu CAG 0 0 - TRNA 45442 - 45515 70.3 # Cys GCA 0 0 + Prom 45696 - 45755 10.7 43 13 Tu 1 . + CDS 45990 - 48665 3450 ## TherJR_2871 S-layer domain protein + Term 48688 - 48730 7.1 + Prom 48932 - 48991 7.4 44 14 Tu 1 . + CDS 49047 - 49778 504 ## gi|282883315|ref|ZP_06291909.1| hypothetical protein HMPREF0628_0907 + Term 49935 - 49969 -0.9 + Prom 49790 - 49849 9.0 45 15 Tu 1 . + CDS 49980 - 50358 217 ## COG3666 Transposase and inactivated derivatives Predicted protein(s) >gi|281296806|gb|ADDO01000068.1| GENE 1 213 - 1088 1299 291 aa, chain + ## HITS:1 COG:no KEGG:Cthe_3188 NR:ns ## KEGG: Cthe_3188 # Name: not_defined # Def: copper amine oxidase-like protein # Organism: C.thermocellum # Pathway: not_defined # 180 291 380 493 495 101 44.0 4e-20 MKKLILATLMFMVLIPSALFAQEKKYEVPVKLVKYGEENKDSMGNKALKQVAEVTEKDGK AHYKLFFRKMVFMNMEGELTNLFIYDSDKDSNRIETKQTALDGEYNKSHEFDRNSLKDDK ILVAVWVDAMDALAEKGKGGGEQKAYLSFDWANAKEIAQADKKVDSKKECCQKEMAKDAQ IKILVNDKEIKADQAPYINNGRTMVPLRFISEALGQKVDWDAKQKKVTIGENLAILTINS DEIVGKDKTIKIESPAVVKEGRTFVPLRAVAEILGAKVSWDGPSKTVKINK >gi|281296806|gb|ADDO01000068.1| GENE 2 1189 - 2469 1321 426 aa, chain + ## HITS:1 COG:MTH1505 KEGG:ns NR:ns ## COG: MTH1505 COG0402 # Protein_GI_number: 15679502 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Methanothermobacter thermautotrophicus # 19 412 19 414 427 306 40.0 4e-83 MSILYKNINYLDLENEKIIEGADIFIEGNLIKKIGNNLQIKASEVIDGNFLLMTPGFVNG HTHLGMSYFRNYADDLKLMDWLENEIWPIENKLTADDIYWSSLLSICENIKSGVTNFCDM YYEMDKVCDATIISGIRGTLTRGLTDNDGKGKEKLKSVRELYNNYHNKANGRIKVVPAPH AIYTCSENFLREISDLSKDLDGIINIHLSETKGEVENSLKEHGMTPISYVNSLGLLDNHV IAAHCVHITDEEISLVKDKKFYPIYNPTSNLKLASGFTPVDKLLKNNIIMGIGTDGDSSN NSQNLLQDMHIGAIVNKAREMDEEAVKAIEILKMATINGQKALGISKAGLIKEDYLADLT IFNLKSSNFTPKNNLINALVYSATAEDVRDVLCDGKFVMRNRELVNLDEERIKFEVNRHF EELVKR >gi|281296806|gb|ADDO01000068.1| GENE 3 2466 - 3320 565 284 aa, chain + ## HITS:1 COG:CAC0420 KEGG:ns NR:ns ## COG: CAC0420 COG1266 # Protein_GI_number: 15893711 # Func_class: R General function prediction only # Function: Predicted metal-dependent membrane protease # Organism: Clostridium acetobutylicum # 63 277 56 271 276 78 31.0 1e-14 MRKINKKGIFSFIGSFIIIFVLIILLTRVFSLVFFSAFKLFTNEKTLLENKMIIPLLSTL GELLTGLIFLKFIWKKSLAYVWIKKEKSLAYFSKGFLLGFIQISIFLIINLALANISFKS VNKDILNIYFILYLIGFIIQSTSEEFLVRGLLMKYLSEKFSTKIALFVPAILFGLLHLAN PGVTLVSTINTMLVGLLYGIMLLKTENLLFTCGAHSAWNFTMGIVYGLPVSGLGDMKHLF TFNFINKKALGGIYGPEGTFLVCIILFVSILYFYFYKKRGIENG >gi|281296806|gb|ADDO01000068.1| GENE 4 3313 - 4302 1277 329 aa, chain + ## HITS:1 COG:CAC0626 KEGG:ns NR:ns ## COG: CAC0626 COG0180 # Protein_GI_number: 15893914 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Tryptophanyl-tRNA synthetase # Organism: Clostridium acetobutylicum # 2 327 12 339 343 378 54.0 1e-105 MDKKIVYSGIQPSGQLTIGNYIGALRNFMGLQDDYLCLYCIADLHAITVAQVPKDLRKNT LDLIALYLACGLDPEKSIIYIQSHVPAHTELAWVLNTMTGLGQLQRMTQFKSKSQKVKEV QAGLLNYPVLMAADILLYQTSYVPVGEDQRQHLEITRDIAQRFNHRYSETFTVPEILPAK VGGRIMSLQDPTSKMSKSDANKDGFILIIEDENQTRKKIKKAVTDSLGTFRYCDEQKGLK NLIDIYASFSNLKAEEIVEKYKDQGYGVFKDELAELVVDSLRPIRQRFKDIREDKSYLEK VYKEGAEKASYLANKTLRKVYKKVGFIER >gi|281296806|gb|ADDO01000068.1| GENE 5 4762 - 7401 2857 879 aa, chain + ## HITS:1 COG:CAC2399 KEGG:ns NR:ns ## COG: CAC2399 COG0525 # Protein_GI_number: 15895665 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Valyl-tRNA synthetase # Organism: Clostridium acetobutylicum # 3 877 6 881 881 997 54.0 0 MKELSKVYNPKDFEENIYDYWMKNDYFVAEVDKDKKPYSIVMPPPNVTGNLHMGHALNGT IQDILIRAKRMQGYSALWLPGTDHASISTEAKVVAKIRSEGKEKEDLGREKFLDEAWAWT HEYGGNIKKQFRKLGASCDWTRERFTLDETLSKAVGQVFVELYNKGLIYRGSRIINWCPS CKTSISDAEVDHIEHDGEIWYFTYPFEDGKGGIEIATTRPETIPGDLAIAVNPNDDRYKD LIGKKVKIPVMDDRLIPIIADEYVDMEFGSGAVKITPSHDPNDFEVGKRHVLGQLKIMTD DGHLNENAGKYSGMERFAAREKIIEDFKEKGFYIGKKKHHNAVGHCSRCNSVIEPLISKQ WFVKMEPLAKPALEAYRNGELNIVPQRFGKIYENWLLNIRDWNISRQLWWGHRLPVWYDQ DGNYIVSLEDPNGKEEYNKKTFTQDEDTLDTWFSSALWPFSTLGWPQKTEDLDYFFPTDV LVTGYDIIFFWVIRMVFSSLEQMGQLPFKDVLLNGLVRDELGRKMSKSLGNGIDPLDVID EYGADALRFTLVTGNTPGNDMRFYIKRVESSRNFANKLWNATRFIMMNLSDDISDSNFLI DELQDQDKWIISKLEKTIKSITEKIDKYEIGLAAADIYDFIWSDFCDWYIEMVKPVLYSE GQKTNTQKVLLFVLENILKLLHPFMPFITEEIWQTLPQRKSALIVADWPKYREEFNFQAE EDAIEYIENAIKNIRNTRSNMNIENSRKANTIIFTKDEKIRDIFERNQGQLINLAYAKSI TVTNDESLKNKDQVTIVLDKAEILLPLKDLIDFDKELQRLEKELKDAQSEMKRAQGKLNN KGFVEKAPQKLVDEEKAKIEKYSQIIKKIEENIGQIKNR >gi|281296806|gb|ADDO01000068.1| GENE 6 7398 - 8702 1023 434 aa, chain + ## HITS:1 COG:BS_folC KEGG:ns NR:ns ## COG: BS_folC COG0285 # Protein_GI_number: 16079860 # Func_class: H Coenzyme transport and metabolism # Function: Folylpolyglutamate synthase # Organism: Bacillus subtilis # 24 421 26 424 430 203 33.0 5e-52 MIYKKLIDNIENRVGKFKSKGNIRMIKILEHFDNPCDSMKFIHIAGTNGKGSTSYFLYEI LKSKFKVGLYTSPGLTSYRDRIVVGDLRISQSEFLSIGEEILEKEKLILDRYGELNKFEF LTTIAFIYFKRKNCQLVVLEVGMGGRCDSTNIIKAENKLISIITSISYDHMQYLGNTIEE ISSEKAGIICQNGIVVTSNKDKKILKVLQDECKKKNASIYYSKDLCVKILKSDLQGSKFI LNLEKKDYEISLDQIGLYQIENSILCLYSLFILIKKALIDFDFLKATKLIKDAKWKGRMD LVSKNPRILLDGAHNIGGIEKLRDNLKLFYFDKLYLVSSILKDKDHKKMLEEIGEIADLL ILVDLESKSNEDIEILEKEAQISVKKVMCKSSLKEALNYIVPMARPDDLILVSGSLQLIK EFYILKEMDELSYD >gi|281296806|gb|ADDO01000068.1| GENE 7 8695 - 8895 227 66 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282883322|ref|ZP_06291916.1| ## NR: gi|282883322|ref|ZP_06291916.1| conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] # 1 66 1 66 66 118 100.0 2e-25 MIEKEEIINYLKKIEKKFSANDYNGKDSREFEIIEGKVPIMLSAPHSVNHFRNGKIKYCD DFRDRG >gi|281296806|gb|ADDO01000068.1| GENE 8 8852 - 9223 266 123 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|300813252|ref|ZP_07093614.1| ## NR: gi|300813252|ref|ZP_07093614.1| hypothetical protein HMPREF9131_0589 [Peptoniphilus sp. oral taxon 836 str. F0141] hypothetical protein HMPREF9131_0589 [Peptoniphilus sp. oral taxon 836 str. F0141] # 4 123 412 531 531 205 97.0 1e-51 MGKSNIVMILGTEDNDKIDISYNEKTITARILTDDNCRDYIIEMPATIRKKLDMNGIGCI VKVKRNMEYNFKRHSISQGITFLGTVITVAELNCSLFIKFLLIILIFPLILWWIFNEERI KVK >gi|281296806|gb|ADDO01000068.1| GENE 9 9220 - 10080 214 286 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|88804229|ref|ZP_01119749.1| possible ribosomal protein S6 modification protein [Robiginitalea biformata HTCC2501] # 58 285 217 453 457 87 27 2e-16 MIKKLRGYLIARYDNMCNSYTCKRLEEEAKSLNIEMNTIGVCDTIICENKILHKAHQLNK VDFLINRHKHGHIKDRLNSLAKKSYNNLSSFNTYLDKFSQLENISSLHFLKPKYFLASAD KSFEEVSKILSDPFVIKGLDGSEGDQVYLIKSEEDLKKIRTFYGIDKEFLFEEFIESSFG RDIRMYAIKGKIKAAMLRKSNMDFRANFALGAQLSPYDINPKMEKISEDIYKITGLDFVG IDLLFGRDNFYFCEVNVMAGIKGIEKATGTNIAREILLSIKEDFNE >gi|281296806|gb|ADDO01000068.1| GENE 10 10073 - 11389 1070 438 aa, chain + ## HITS:1 COG:Ta0637 KEGG:ns NR:ns ## COG: Ta0637 COG0285 # Protein_GI_number: 16081726 # Func_class: H Coenzyme transport and metabolism # Function: Folylpolyglutamate synthase # Organism: Thermoplasma acidophilum # 51 430 42 416 424 143 29.0 6e-34 MNRKEAEDYIFASYMRSEKFQSYNDKDKNKRHPELTKEILENLSTGINIGITGSKGKGSI ANMLSQILMAKFRVGLFTSPHILKINERFKVDGKEISDEDFIRIVEELKIDFDKIEKNLP KSIPISPIGIEAAIGLKYFKEKDTQINIMEFGKGAKYDDVNNVINKYCLINTIFLEHTRE LGSSLEEIANDKCNIIKKGQICAYSASQDRQVLKILKNKARKEGVKIKVYGEDFYGENIS YSFDGMTFDGVFKDRRIKNIKIPLIGLHQVKNAVLALACAIDIYKDLPIEDIKKNLLDLK YPARFEIISKNPLIILDACINKKSLEPIKESLKALKIEDITSIVGIPDDKDYFGVVSGVK DISKNIILTKTSNSHYVFTDEQRQKLLANKIFVETSPDIKEALNMARKCKSPIIILGTTS LISESKEFFQTSGLPQNL >gi|281296806|gb|ADDO01000068.1| GENE 11 11577 - 12839 1300 420 aa, chain + ## HITS:1 COG:CAC0519 KEGG:ns NR:ns ## COG: CAC0519 COG0044 # Protein_GI_number: 15893810 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotase and related cyclic amidohydrolases # Organism: Clostridium acetobutylicum # 1 419 2 424 424 399 48.0 1e-111 MIIKNARVIDPSQNIDKIADIQIKDGKINKIASDLTDDKEIIDAKNLIACPGLVDVHVHF RDPGFTYKEDLYSGTQAAIAGGYTSVVCMANTNPVMDSPEKVKEFYKRAKELPINVYTVS ALTENFEDNKLVDMEKLLQEGAVGFTDDGIPNRNSKLILQAMKEAKKLNTLISFHEEDPN LIENNGINHGEVSEKFNIYGSPSLAESSFIARDVEYAINTGAKIDIQHISTKRGVDLVRY GKSRGANVFAEVTPHHFTLTDKALLKYKQMAKMNPPLRTEEDRQAILEGIKDGTLELIAT DHAPHSQEEKNREITKAPSGIIGLETALGLGVRELVEKNIISINKLIELMSTNPCKKYNL PGGTLKEGSRADILIFDPKREYSIETFKSKSSNTPFKGEKLIGKVIYTISKGHIIYMDKN >gi|281296806|gb|ADDO01000068.1| GENE 12 12931 - 14691 1169 586 aa, chain + ## HITS:1 COG:no KEGG:Clos_1404 NR:ns ## KEGG: Clos_1404 # Name: not_defined # Def: hypothetical protein # Organism: A.oremlandii # Pathway: not_defined # 2 466 4 459 587 229 34.0 3e-58 MKLYRFITRTFMNYTASIKRFPLAMLCSLLAAFNLARALNFRDVDLANINNNRLGAFFIG GIFLYSVISLYLESAKSNVKNAEDNKQIKFITVLVYILSIPIMYGFYDIIYITKQGFFPY ENKYIYFGMIALFVVLASYIAKIFYHKDYVSYVANIFEAFIISNIYSIVSYIGISAIIFA INSLFSANFPSNIYLKIFYFIFIPYNVGIFLSEFPKASESFIDYDYPKSIKVLLVYVILP LVLAYTAILFLYFLKIIINWQLPDGIIVNLVLWFAVVTVFFQFFLQKINKKFVNKFKKYY PFAIIPLLCMMFLSIGLRINQYGLTENRYFIVATGVWVLISEIYYIIYKKNSNITIPFIL SIIILISSLGPISCYKMSEKSQIARLTKILEKNNMLKSNNIVKNKDISEDDKAQITSILL YLTNNHIKPDIPYLDEDFEFSDQKMLNTFGFKGQDETNYENYYYYYDNPSSVDVSGYSKL IRNVVYNKDTKVDNFTFIYNPSTIEIYLTRKDKKDLLREIDLKSLRDKLKTLKTANGVIN PEDLAISGENAGVKYKIIFTSISFNGEDSKFDSYVSFDLLTSGSDE >gi|281296806|gb|ADDO01000068.1| GENE 13 14692 - 15129 585 145 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282883343|ref|ZP_06291937.1| ## NR: gi|282883343|ref|ZP_06291937.1| hypothetical protein HMPREF0628_0868 [Peptoniphilus lacrimalis 315-B] hypothetical protein HMPREF0628_0868 [Peptoniphilus lacrimalis 315-B] # 1 145 1 145 145 196 100.0 4e-49 MYYLTFENDVFIDTDLDLKYLKKLLKKYLEKTDFFQVIALGEDKLIKKLLRDYAAYDEDG EYEEIFQGPTDDDFKKVILDNFLNENNIPNFYKLSLYQGDKLKFEVLNYGEEVSIYGFDQ KQVEEAYKKLEEDYGIKNINIVVEK >gi|281296806|gb|ADDO01000068.1| GENE 14 15324 - 15569 318 81 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282883307|ref|ZP_06291901.1| ## NR: gi|282883307|ref|ZP_06291901.1| conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] conserved hypothetical protein [Peptoniphilus sp. oral taxon 836 str. F0141] conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] conserved hypothetical protein [Peptoniphilus sp. oral taxon 836 str. F0141] # 1 81 1 81 81 125 100.0 8e-28 MDDVKYKELISVTDQMIFKEICSMLDEKQIPYLTDDDGDFLRLISGFSTFEQTIYVSEKD YEKAKEILVYYKKDYGDKNLY >gi|281296806|gb|ADDO01000068.1| GENE 15 15633 - 16229 634 198 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|110803742|ref|YP_699619.1| 30S ribosomal protein S4 [Clostridium perfringens SM101] # 1 196 1 197 197 248 62 4e-65 MAKMMGPRFKLSRRLGLNVCGHPKAMKRAQRGSARSDKKLTEYGKQLLEKQRLRAYYGLL EKQFKNLFIEAQKAKGQTGPNLVSFLERRLDNLCYRLGFASSIRQARQMVLHGHILVNGK KVDIPSYRCDVSDEISLSRKGKKVELFKENFNTNFPVSYPYLSKNEDFKGKLVSLPNRED IPIEIEDQLIVEYYSKNM >gi|281296806|gb|ADDO01000068.1| GENE 16 16503 - 17234 1143 243 aa, chain + ## HITS:1 COG:CAC2295 KEGG:ns NR:ns ## COG: CAC2295 COG0217 # Protein_GI_number: 15895562 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Clostridium acetobutylicum # 1 238 1 237 246 246 55.0 3e-65 MSGHSKWNNIKNKKGKEDARKGKVFTKLARLITVATRQGGANPDFNPQLKVAIDKAKAEN LPNDNIERAIKKGAGEDDSSNFETITYEGYGPSGIAVMVKCLTDNRNRTAPDIRHIFDKN GGNLGTPGCVSFMFQEKGIIGILKSDDMDLDEFILSALDYGAEDVVDRGDAVEIVTVPES YHDVRKKLEEDGYEFVESDITFVAQNYSKLSDEDDIKKMDKLIDALEDNDDVQDVYTNWD QED >gi|281296806|gb|ADDO01000068.1| GENE 17 17238 - 17816 334 192 aa, chain + ## HITS:1 COG:AF1436 KEGG:ns NR:ns ## COG: AF1436 COG0655 # Protein_GI_number: 11499031 # Func_class: R General function prediction only # Function: Multimeric flavodoxin WrbA # Organism: Archaeoglobus fulgidus # 4 111 2 110 220 75 34.0 8e-14 MTKKLLALMGSERRHRSTENFLDIFIEEKFKDFDVKKIILKDLSFSNCISCYGCAKVPRC VVKDDMTDIYPLIDNSDVVIFASPIYFNSVSALSKSFIDRMQLYWSRKFLRKEVLPKNKL GFGLFVGGAPLTDQQFLGAELVLKHFFMAIGTKKYTYLELSDTDKREVQKTEEILTYINK HFEENSLYESIS >gi|281296806|gb|ADDO01000068.1| GENE 18 17875 - 18537 827 220 aa, chain + ## HITS:1 COG:L63310 KEGG:ns NR:ns ## COG: L63310 COG0274 # Protein_GI_number: 15673422 # Func_class: F Nucleotide transport and metabolism # Function: Deoxyribose-phosphate aldolase # Organism: Lactococcus lactis # 1 220 1 218 220 251 62.0 5e-67 MKLNKYIDHTLLKADATQESIKELCRQAKEYDFMSVCINSSNIELAKEELKGTDVKICTV IGFPLGATTTESKVFETTDAIEKGADEVDMVLNIGALKSKNFDIVLRDISEVAKVAHNKG KILKVILETCLLEKDEIIKACQLSKEAGADFVKTSTGFSTGGAKEEDVALMRKTVGDQMG VKASGGIRTLEKARLMIENGATRLGVSAGVQIMEELESEN >gi|281296806|gb|ADDO01000068.1| GENE 19 18527 - 19288 649 253 aa, chain + ## HITS:1 COG:CAC0330 KEGG:ns NR:ns ## COG: CAC0330 COG0682 # Protein_GI_number: 15893622 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Prolipoprotein diacylglyceryltransferase # Organism: Clostridium acetobutylicum # 3 243 17 264 272 201 48.0 1e-51 MKINPVAFKLFGLEVRWYGILIAIGAFLAINVAEKMGKRYNYKDGLYNLFSSDLGIFVIL LGVIGARLYYVIFQWDYYRENPGEILAIRNGGLAIYGGILAGLLATYIFSRVKKIKFMTI LDCLAPAVPLAQAIGRWGNFINGEAHGGPTDLPWAIMVDGIKVHPTFLYESLLDFFIFML LYFFVSKRQKFKGQLFTLYLIIYGCGRFFIEAMRTDSLYFGPFRVSQLLSLILVVIGLII YFYNISGLKNKSV >gi|281296806|gb|ADDO01000068.1| GENE 20 19493 - 20128 477 211 aa, chain + ## HITS:1 COG:CAC1577 KEGG:ns NR:ns ## COG: CAC1577 COG1636 # Protein_GI_number: 15894855 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 1 202 1 203 208 190 51.0 1e-48 MNKINYNLEMEKIINKIDLQNKPTLLLHSCCGPCSSAVIERLYPYFKLQVLYYNPNIDTY EEYMKRAKEQMRFLKEFGIADQVKVQVLEYDKDAFLKAVQGYEHAGEGSSRCLKCFNLRL SKTAQLAKEGDFDYFTTTLSISPWKDSQVLNKLGNYLGNIYGVTYLYSDFKKKNGFKRSV ELSNKFNMYRQCYCGCQFSQEETLNCEEKIN >gi|281296806|gb|ADDO01000068.1| GENE 21 20109 - 21260 1250 383 aa, chain + ## HITS:1 COG:SPy0818 KEGG:ns NR:ns ## COG: SPy0818 COG2843 # Protein_GI_number: 15674859 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) # Organism: Streptococcus pyogenes M1 GAS # 5 382 50 429 430 183 30.0 4e-46 MKRKLISIFLIFLLVFTSCQNSTNLSKENKTKKTKQETIKEDKKTYVEILAMGDMIFHRP LVSNARVGDSYDFSIYFKNIEDDIKSADISLANFEGTINKNKALSGFPRFNFPIQTVTGL KSVGFDVLTTANNHCLDTGIDGIFQTINAINDGEMINVGTYLDENHPPKIIEKNNIKIGF LAYTDLLNGMDSLVRGKEYLIDTFATNDVKKDIEALKNQVDFIIVIPHWGNEYQYSPSLR QEELKDLLFSSGADAILGSHPHVVQKFQDFSIDGKRKFLAYSMGNALSSQRQRYLGKKGV ESGLMIKLKLEKNLTQNTTRIISSQVIPTYVMDINLDGKRTCQIFKYTDILPGGKFSDKI NSSEIDSINEKYNFVKNILEDKR >gi|281296806|gb|ADDO01000068.1| GENE 22 21263 - 21952 488 229 aa, chain + ## HITS:1 COG:SPy1411 KEGG:ns NR:ns ## COG: SPy1411 COG4123 # Protein_GI_number: 15675331 # Func_class: R General function prediction only # Function: Predicted O-methyltransferase # Organism: Streptococcus pyogenes M1 GAS # 4 223 13 245 258 89 28.0 5e-18 MKRDKVPGTNYIIVQDENNFKYTSDSLILSSFVKMGQRALDLGCGNGIISLRIVDRFKEL YAIDYNKESLELFKIALKENYLEDKIRLIQDDILNLGNYFPNNYFDQILFNPPYFNCFEP KSNMEKARHSTDIRNFIEIVSKLLKARGDFTIIFPSNRISELIYYLNLYKLKVKDMIAVK PNLEKPALHFILRCRKDAKFGNFYREFIVHESDYYSEQMLKVYNNEVLL >gi|281296806|gb|ADDO01000068.1| GENE 23 21949 - 22755 751 268 aa, chain + ## HITS:1 COG:CAC0307 KEGG:ns NR:ns ## COG: CAC0307 COG0313 # Protein_GI_number: 15893599 # Func_class: R General function prediction only # Function: Predicted methyltransferases # Organism: Clostridium acetobutylicum # 2 267 6 282 282 230 45.0 2e-60 MIYFCPTPIGNLGDITLRTLEVLRSVDIIYAEDTRVTIKLLNHYDINKKLKTYHKFNEAK ASLEIIESLENGLDIGLVTDAGMPGISDPGHVLIKKLIEKNLDFRVLPGPNAALSALVIS GLASDNFYFYGFTNPKSSSRKKEFENLKNIRATLIFYESPHRIIEFLKDMREILGNREIS ISRELTKIYEETLRGKVEDILNSNLTLKGEFVIVVEGNTQKEEIPDIKELLIERINNGQK KSQAVKEIAQEYNISKNVVYKESLNIDA >gi|281296806|gb|ADDO01000068.1| GENE 24 22748 - 23692 704 314 aa, chain + ## HITS:1 COG:no KEGG:Mahau_2210 NR:ns ## KEGG: Mahau_2210 # Name: not_defined # Def: NurA domain-containing protein # Organism: M.australiensis # Pathway: not_defined # 1 314 1 332 332 193 33.0 9e-48 MLDFNQFEEKIKTINSNLRNKYKKYFSISNEEFLKSLEENVGEIENFEKLSQKELEKIDD LVGVDGSVNRCGGAYPHYIEMFQGLAKSTKYEEVYVSDIYTPTLNDSFEIEEKREKLLAT IEIESALEYIKKRIPQVLMMDGGFIRYKINCPEHFKDLREICQRNNIILFGVIKDIKTGI LARALSLDRSIYDRELLFNRFKIGQALLIKNEVNKKYIEKGLGEGFSSAFIRTSNFPGVV GIDILDVQENYLRFVSRLVYSLTPINSRGIPLWLDIVDKDVRITDELIKASLESYLDRDL YERFFVSERDKRTL >gi|281296806|gb|ADDO01000068.1| GENE 25 23701 - 25542 1720 613 aa, chain + ## HITS:1 COG:BH0052 KEGG:ns NR:ns ## COG: BH0052 COG0433 # Protein_GI_number: 15612615 # Func_class: R General function prediction only # Function: Predicted ATPase # Organism: Bacillus halodurans # 1 609 1 609 610 503 45.0 1e-142 MKVLGITTTQEVYIGSKEKNFRNNEFLVVQDPVQGSLIGEIVEAKTYNRFIPLDMGGDFV DAGVLSSLKSMGYDINNETVYVGKLRFFEEVLYAPITGSDVRIPTFEEIKNILLNIHTKD AMVLGVIKNTDDLTKNMDEEYRDLLFTYDKEEFVKQKDIPYLFNYRAMHQYPHIGIFGGS GSGKSFGLRVILEEIMEKKIPTIVLDPHFEMDFSTNSEISTKDFNDKFKCLQIGLDVGIK FQDLNKGDLKNLLNSVSPLTDSMNNVIDVILNKGASYYSFKDKLEMLIEAEELGGLNKIN GKIGAETDLTEIQRLEMLRDNYEKYGNLTNPASTRGVLWRLNSLYGQGIFSYNIDIIFEL IKNGKLVVLQGSTKIINVFSTYLLAKLYYIRKEYRDEIYRENTDAKFFPPFVIVTDEAHN FAPKGYESASKSILREISQEGRKYGVFLILATQRPTLLDETITAQLNTKMIFRTVRASDI DTIKEETDLRIEESKRLPYLQTGDVFISSSERGRSSFVRVRAAYTKSPHTLNPFDELSQN KVDNLNEFYKVIEDKLPFSTVSILNILEEVNKESDTTYSYDDFLNNLKDLCQNNIITKTD NFMSERYEKIEEE >gi|281296806|gb|ADDO01000068.1| GENE 26 25542 - 27062 1357 506 aa, chain + ## HITS:1 COG:slr0904 KEGG:ns NR:ns ## COG: slr0904 COG0606 # Protein_GI_number: 16331658 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted ATPase with chaperone activity # Organism: Synechocystis # 1 500 1 506 509 467 46.0 1e-131 MYSRVKTCTLFGLNGYEVDVETDLSRSLPKVSLVGLPDTAIKESIERVKSAINNSAYDFP NKKITINLAPANLRKDGSQIDLAIAVGILLSDGLIEKSPDDFVFLGELALDGKIYPISGA LPMIISMREKGFRKFIVPYDNRREAALVRDVEVYPVKNLKDVVEFLRGNISLERAVGQIS NTKVEYDNDFSDIKGQENLKRLLTIAAASKANCLFIGSPGSGKTMAAKRFPTILPQLDFE EAIEVTKIYSVAGLLKENALISTPPFRSPHHTASAVALIGGGTYPRPGEISLAHKGVLFL DELPEFSKNVLEVLRQPMEAKIINIARANGTVTFPSDFQLIVAMNPCPCGYSHSKKHECT CSAYQIQRYLSKISHPLLDRIDLHMEVSEVDYKEISTEKIPLSSEQMRDQVQNARDIQKE RFKDKAYSFNSQIPDKDLKKYCKLDEQSKKLMEIAFNKYNMSARTYNKILKISRTIADMD NSAQIKEDHLLESIQYRSIDSKFWGN >gi|281296806|gb|ADDO01000068.1| GENE 27 27062 - 28144 911 360 aa, chain + ## HITS:1 COG:TM0250 KEGG:ns NR:ns ## COG: TM0250 COG0758 # Protein_GI_number: 15643022 # Func_class: L Replication, recombination and repair; U Intracellular trafficking, secretion, and vesicular transport # Function: Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake # Organism: Thermotoga maritima # 47 349 29 326 337 221 39.0 2e-57 MDRNAIIFLSSIGLSSSNIIKILDFSIEKNLALNEFLNLEENQYKPLLKKVTFDKIKKFY CKYEEILENTLNKSQKLQVKISTILDENYPSSLRRIEDPPAILYIRGKDIKLENNIAIVG ARKHTSYGIYAVNKFVDELSSYNFTIVSGMAYGIDALSHKRALEKNMKAIAVLGNGIDII YPKANTNLYMNLLDKATIVSEYPFGMKATKFTFPQRNRIISGLSEGVIVVEAKEKSGSLI TARLAAEQGKEVFAIPGNINSIYSKGTNLLIRDGATPLLQIEDILPFYPSIIKKEEEKHI IENLSEDENLILNLMEDGNITIEEICNKSNFDVIYINSLLTKLELKSVIEKISLTEYRII >gi|281296806|gb|ADDO01000068.1| GENE 28 28158 - 30242 2125 694 aa, chain + ## HITS:1 COG:BS_topA_1 KEGG:ns NR:ns ## COG: BS_topA_1 COG0550 # Protein_GI_number: 16078675 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Bacillus subtilis # 1 549 1 550 550 583 55.0 1e-166 MAKNLVIVESPTKAKTIKKMLGSNYKVMASVGHVRDLPKSKIGIDIDKDFEPQYINIRGK GEIIKELKSEAKKATNVLLATDPDREGEAISWHLAHILGMDEDDENRVTFNEITKDTVKS SIKKPRKIDMDLVDAQQARRELDRLAGYKISPLLWKKVKAGLSAGRVQSAVLKIICDREE EINNFISEEYWTLDADLRFNRKKVLANYQGTYKNNKLEKADLKTEAHVDKIIKNIDKENF TVKDVKEGKRSRNPAGPFTTSTMQQEASRKINFTIRKTMQVAQSLYEGVKLPEEGLVGLI TYMRTDSTRISDQAVNMTLDFIEENYGKDYVGRARKAKKKSENVQDAHECIRPTDVRKTP YLIKDSLNKDQFKLYELIWKRFVASLMKQASFATNNIEIISNNESFKLTGSILKFDGFLK VYAYDNKKDEVIPQMKVGDKLKLKELIKDQHFTQAPPRYNEASLIKTLEDLGIGRPSTYS PTISTLQTRYYVVNEDKKLIPTELGLTVNKILCENFEGLVNKEFTAKMESDLDKVANGNL KWKELVRVFYDKLKIALDKAYENIEKVQISDPVTDVICEKCGRHMVVKMGRFGKFLACPG FPECRNAKPYVEKIGVKCPKCKDGDIAIKMSKKGRKFFGCTNYPKCDFVSWNKPVDEFCP KCGNILVEVANRKGKTIRCSNATCSYIKKESKDE >gi|281296806|gb|ADDO01000068.1| GENE 29 30235 - 31683 1376 482 aa, chain + ## HITS:1 COG:RSc3115 KEGG:ns NR:ns ## COG: RSc3115 COG2804 # Protein_GI_number: 17547834 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB # Organism: Ralstonia solanacearum # 91 474 125 529 533 350 43.0 4e-96 MNKVSQALLEILNEKYCRKNFIVPIYEDKKKIILYSANDDELLNYNIKELTEKDIEFIKK SKDIIIKEIESLFEKKLDDKILAQIKNLYNEDIVIDDLEDESKDSPVAKVLNYILNFSIE KDASDIHIENLEDSVLVRVRIDGSLHELSKFPKNLYPYLITRIKVMAKLDIAEKRLPQDG RFSFNFRGRNIDIRVATSPTAYGEKIVFRILDVGRVDYSPEGIGLSGENLKKILKVISQP QGLVLISGPTSSGKTSTLYTILKYIQNSQINIMTIEDPIEYKIAGINQVEVNENTGLSFE RGLKSILRMDPDKIMIGEIRNKETAHIAVSASISGHTVFSTIHTENSPAVVGRLIDMGIE PYLVSAGLIGVISQRLIRKLCPHCKEKEISNNPFFKGKEIYKKRGCPKCNGGYKGRIAVF EIMIVDETLKEMISEKKSIGKIKNYAISQGMKTLASEILSLVENGQTSMEEYYRNINTIG EI >gi|281296806|gb|ADDO01000068.1| GENE 30 31680 - 32849 816 389 aa, chain + ## HITS:1 COG:aq_747 KEGG:ns NR:ns ## COG: aq_747 COG1459 # Protein_GI_number: 15606135 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, component PulF # Organism: Aquifex aeolicus # 25 385 27 402 408 182 31.0 9e-46 MNFTYKVLHGKEIKKGKISAKNYQEALTNLKSQGYRPISLEEDIEKNKGISLNIKFKNRD YYFLFTQLALILKSGIVLEEALKIVADNFNEKKRNILLKISQDLHSGISLSQAMAQSKKF TDFIVSLVDVGENSSNLEQVFRKLASFYKREEKLRKNIYSTLTYPIILIIVSALVVNFLM LNVIPTFADIYDQAGESLPLMTRLLIGFSKILRENFIIISFIFLAISFFFILYLKKNPKI KDKILLKSAYYKRIYTLRFSFTIYTILSAGLTIDEATQTLCKMEANILIKKELGKVSVNL KKGRAYWQSLRDMNIFPKIFISMVRVGEETSSFKEIFKNFIDYYEEETENYNKRFLELLG PILIIILSMIIGFIVLSIALPIFNMVNAI >gi|281296806|gb|ADDO01000068.1| GENE 31 33710 - 34828 1173 372 aa, chain + ## HITS:1 COG:CAC0590_2 KEGG:ns NR:ns ## COG: CAC0590_2 COG1985 # Protein_GI_number: 15893879 # Func_class: H Coenzyme transport and metabolism # Function: Pyrimidine reductase, riboflavin biosynthesis # Organism: Clostridium acetobutylicum # 151 370 1 222 223 189 47.0 6e-48 MLEFVDYRSYMSLAMDLAEKGKGFTLTNPMVGCVIVNDDRIIGRGYHKKFGDLHAETMAI EDAQKNGESLEGSTLYVNLEPCCHYGKQPPCTKAIIENKIKKVVIANVDPNKKVSGKGIK TLEDAGIEVVEGIMEEEGLKLNEEFFHFIKTQRPFVTMKSAMTLDGKIASVTGDSKWISS QISRDYVHKLRAENNAIMVGIGTVLKDDPSLNVRIYGNYKNPTKILVDSKLRIPLDAKLL SSSDAPTIIACTEGYDTEKYNKLKEMANVHILLCKKKDGRVDLLDLFSKLKDFDICSVLL EGGGNLNYSMLRENLVDRLIFFIGPKIIGGSGLSPVAGEGISLMKDAIKIKDFQVEKMGQ DILINAYVDKEE >gi|281296806|gb|ADDO01000068.1| GENE 32 35016 - 35471 457 151 aa, chain + ## HITS:1 COG:SP0177 KEGG:ns NR:ns ## COG: SP0177 COG0307 # Protein_GI_number: 15900114 # Func_class: H Coenzyme transport and metabolism # Function: Riboflavin synthase alpha chain # Organism: Streptococcus pneumoniae TIGR4 # 1 150 63 211 211 127 50.0 1e-29 MKESLNKTTFKDIKKGDAVNLERALSLDKRLDGHIVQGHVDSLGKIIEIKNIDNFVEYKI SINEDSLKEVVYKGSIAIDGISLTVSQVTDTYFKVSIIPTTINNTNLKSKKVGDLVNVET DIIGKYIFKYLNKSEDKEKIDMNFLKENGFY >gi|281296806|gb|ADDO01000068.1| GENE 33 35481 - 36686 1477 401 aa, chain + ## HITS:1 COG:L0165_2 KEGG:ns NR:ns ## COG: L0165_2 COG0807 # Protein_GI_number: 15672977 # Func_class: H Coenzyme transport and metabolism # Function: GTP cyclohydrolase II # Organism: Lactococcus lactis # 205 397 1 193 193 248 60.0 1e-65 MQINSIEEVTEALKNGEIVIVTDNPNRENEGDMICAAEFASGENINTMASLAKGLICMPM SDEIARRLDLKQMVTENTDNHSTAFTVSIDHVDTTTGISAYERSITAKKVIDENSSAEDF RRPGHMFPLVAKEGGVFVRGGHTEATVDLLKIAGLKQCGLCCEIMADDGHMMRGKEIFDL AQKLGMKITTVDELIHYRKRHEKIVKDVAVAKLPTEFGNFTAHAFVNTINGEHHIALVKG EIGDGKNLLTRVHSECLTGDAFHSARCDCGRQLQTAMMQIEKEGRGILLYMRQEGRGIGL VNKIKAYALQDKGMDTVEANLALGFPEDARDYSVGAQILRELGAKELRLLTNNPDKIYKL QEFGMEIKNRVPIEIKSTEYDEFYLETKAKKMHHLLEEFTK >gi|281296806|gb|ADDO01000068.1| GENE 34 36712 - 37176 740 154 aa, chain + ## HITS:1 COG:CAC0593 KEGG:ns NR:ns ## COG: CAC0593 COG0054 # Protein_GI_number: 15893882 # Func_class: H Coenzyme transport and metabolism # Function: Riboflavin synthase beta-chain # Organism: Clostridium acetobutylicum # 1 153 1 153 155 218 73.0 3e-57 MKTYSANLYSQGKKYAIIVGRFNEFIGSKLLSGAIDALKRHGVKEEEIEIAWVPGAFEIP LAAKKFALSKKYDAVICLGAVIRGATSHFEYVAGEVAKGIAQASLETGLPIIFGVLTTEN LEQAIERAGVKSGNKGFDAAITAIEMANLFDEIC >gi|281296806|gb|ADDO01000068.1| GENE 35 37170 - 37817 546 215 aa, chain + ## HITS:1 COG:BH0430 KEGG:ns NR:ns ## COG: BH0430 COG0546 # Protein_GI_number: 15612993 # Func_class: R General function prediction only # Function: Predicted phosphatases # Organism: Bacillus halodurans # 5 213 1 209 223 87 30.0 3e-17 MLENVKSIIFDFDGTLHQTTKIYTPALAKAVKILQDKGYIDKFEVDDNFSGKLLGYSAED AWKIIYPNATKEMVAPLISLVGQSMEENMLAKKGSLYEGTEEVLKTLKEKGYDLYLLSNC SNRYLNLACEIYGIKKYFKKLIPAQTFDYIDKGQIIKILMDDMAKEIIVVGDRFHDIEGA KANNLKAIFASYGYGKEEESAKSDYKINDIIELIK >gi|281296806|gb|ADDO01000068.1| GENE 36 37984 - 40074 1973 696 aa, chain + ## HITS:1 COG:BS_yvgW KEGG:ns NR:ns ## COG: BS_yvgW COG2217 # Protein_GI_number: 16080402 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Bacillus subtilis # 12 695 5 698 702 517 43.0 1e-146 MTKNIMKNSSQKNIFYLKGLNCPVCAKKIEDKINSQAYIKSSTFNFSNQKLEIESFIKNN FDLKEEIQNLCDSIEDGVRVVENITDDDEKRDIKKTILIFLLELVTLLGIHFLVSSQIKV FLYLALYLFVAKDVLKEVFTLDKKISLFFDENFLVAIASIAAFFTGAYTEAISVMLFYNF GEFLQDMAVESSRSNISAALQLKPAYANLKTTHGTKKVNPEEVKIGQVIVIKPGEKIPLD GIVVSGSSQLDTSNITGESVPVNVEVDDEILSGVLNINGLLEIKVTKEYAKGTIGKILDM VENASSKKAGVEKFITRFAKYYTPIVVFIALFLALLLPIITDYTIKEAIYRSCIFLVISC PCALVISVPLGIFAGIGSLSRKAIFVKGGNFVEALTDVKTVVFDKTGTITQAKFEVFQVL AIEESKEDVIKFAAIGEQYSTHPIARAIAGMEENLPKPENLKNIDGKGICYTYNGKEFLV GNLKLLKEFEITLEEKFDLPLAVHVYVIRDKKLLGIISLRDKVKDGVEKDIKDLKNLGIK PVILSGDKKEIVRDVAKSVGIDTFYGDLLPLDKVSKLENIMENSQGKVAFIGDGTNDAPV LTRADVGISMGSGSDIAIESSDVVLLKDQISKVVETIKISLMTKRIVYENIGLALILKII ILILGALGVATMFLAIFADVGVSLLCIFNSLRLMKA >gi|281296806|gb|ADDO01000068.1| GENE 37 40574 - 41086 448 170 aa, chain - ## HITS:1 COG:no KEGG:Thebr_1561 NR:ns ## KEGG: Thebr_1561 # Name: not_defined # Def: hypothetical protein # Organism: T.brockii # Pathway: not_defined # 4 166 6 168 171 71 30.0 1e-11 MLDKDIAKNKLIILYIIDNFNHELEESELNFLVLNMELFNYFYFKECLCDMETFGLILFD DNKKYYISDLGKNTLDTFIKEIPQDFLDKLNAYRDDFTKYLRDKNSLKINIFKEDDSYYC KLAINDGDICVMNLKIEVANKDMANIISENFKKNPQIIYKKILGILMMEN >gi|281296806|gb|ADDO01000068.1| GENE 38 41194 - 41724 563 176 aa, chain + ## HITS:1 COG:CAC3203 KEGG:ns NR:ns ## COG: CAC3203 COG0634 # Protein_GI_number: 15896450 # Func_class: F Nucleotide transport and metabolism # Function: Hypoxanthine-guanine phosphoribosyltransferase # Organism: Clostridium acetobutylicum # 7 172 8 169 178 150 45.0 2e-36 MKNNTRILFTQQDIKEKVQSLAKDIAKDIQGEDLLAISLLRGSFIFAADLIREISNYTDK KIEIDFITTSSYGDEEKSAGIVDIISDVRSQVRGRNILIIDDILDSGYTMNYVQNHLREK NPLSIKTVTLLDKPSRRKVDIKSDYVGFVIDDLFIVGYGLNYGKYYRNIPYIYCYE >gi|281296806|gb|ADDO01000068.1| GENE 39 41717 - 42643 404 308 aa, chain + ## HITS:1 COG:CAC0483 KEGG:ns NR:ns ## COG: CAC0483 COG1266 # Protein_GI_number: 15893774 # Func_class: R General function prediction only # Function: Predicted metal-dependent membrane protease # Organism: Clostridium acetobutylicum # 46 305 41 302 309 60 25.0 4e-09 MSEKIRKYKKKYLNVLSVNTLILILAIVFLTIGFDIQKKYDFFGQLITELLIVLLPALLI ARTGYTRSILRLNKISLKDIFFTITIVILAYPIILLLNGLFMSLFSSVMEFKNSTHQLIT LDTSMYNYLVFYCIVPAICEEVFFRATVMNAYEIFGSKFAILMSSLVFALFHFDIQNFMA PLLLAILFANILNLTNSIYAAIIAHFTNNVIAVLFSRYVGDDFFKLLWQTKIAREIGSLQ LFIIILLILISIISSILLKFLFKHFKKESLKNKEGRLVYRQVEGIDLFNFVPILGLVILY IIYYYIVF >gi|281296806|gb|ADDO01000068.1| GENE 40 42653 - 43390 572 245 aa, chain + ## HITS:1 COG:SSO2478 KEGG:ns NR:ns ## COG: SSO2478 COG0846 # Protein_GI_number: 15899220 # Func_class: K Transcription # Function: NAD-dependent protein deacetylases, SIR2 family # Organism: Sulfolobus solfataricus # 5 245 5 246 247 179 42.0 4e-45 MDKIKQACQLIKNSSKVMALTGAGISTDSGIPDFRGKNGYYKDMDPVRSLSKDRLLNEPE KFYKEGYKILLDLNSKKPNKGHLALAKMEKMGLIKGIITQNIDNLHYKAQSSNIYEVHGE TRGIHCMDCGKTYPFELLKEKVDQGQIPPKCTCGGTLRPNVVMFGDMMPKDFEDAIDEME DTDTLIVVGTSLTVSPVNMLPRYADNLIIINQSPTPYDHHADIVFHENSSEVLSQILEEL EKNDL >gi|281296806|gb|ADDO01000068.1| GENE 41 43380 - 44096 704 238 aa, chain + ## HITS:1 COG:SA1419 KEGG:ns NR:ns ## COG: SA1419 COG0500 # Protein_GI_number: 15927171 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Staphylococcus aureus N315 # 3 236 4 238 238 133 33.0 4e-31 MIYNEFAQVYDKLMYDFPYKENSEFLFNILGDRQIKVLEMAAGTGNFTKILGEKYHLHAF DISENMLTIAQNKVKNVFFFKADMINFKTLNKYDAVLCLCDSYNYLLKEEDLLSSFKCVY QALEDNGIFIFDMNTKEKFLKMERAYVDEIDDIFYSWENYFDENKNINHYCVNFFVEEKE DLYRRFYEEHLERAYPSPKVKSLLEQVGFKSIEIYKDYKNSKQIEKADRLVYVVKKRG >gi|281296806|gb|ADDO01000068.1| GENE 42 44097 - 44993 1196 298 aa, chain + ## HITS:1 COG:CAC2370 KEGG:ns NR:ns ## COG: CAC2370 COG1281 # Protein_GI_number: 15895637 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Disulfide bond chaperones of the HSP33 family # Organism: Clostridium acetobutylicum # 4 277 5 279 297 254 50.0 1e-67 MGYILKAIDKEEKVRFALAITTDLVEEARKIHNTSPTASAALGRSLTATAIMASWLKNPK DTITFNIKSDGPAKNIIVTGKNDGYIKAFIANPQEDLPLNKKTGKLDVGGLVGKGLLTIT IDNGLKEPYHGTVPLISGEIGEDLANYFLKSDQVPSAVGLGVLVDKDITIKASAGFIIQM MPGAGEEEIRKLEENLKTLKSISHLVAQGYDAYDLLEKISQGFDVKILEKKEISYKCNCS LEKVKDALISIGPKEIKEIIEEDKKASINCYFCNKDYKLDLKDLEEIYDKAIQINTKD >gi|281296806|gb|ADDO01000068.1| GENE 43 45990 - 48665 3450 891 aa, chain + ## HITS:1 COG:no KEGG:TherJR_2871 NR:ns ## KEGG: TherJR_2871 # Name: not_defined # Def: S-layer domain protein # Organism: Thermincola_JR # Pathway: not_defined # 45 223 22 184 872 93 38.0 4e-17 MNKKVISLVLALVMVLGTFTSVFAAEKTEEPAKKDAKVEETKKEAPKAGEKVEKVVGKDN KIQYIVDKKFVKGYEDGSMGYDKNITRAEITRLLVLANGNEELANSLQGSMKLYTDVDTK HWANGVISVGTTRPSDANKIAMLAGYPDKSFKPDKNVTYAELAKMLVVLVKKDLTEDMVK NAKWATSWMLWAKELGILEDVKIEDSNAFATRADAFTMVYNALFAMKEFKQVPNNEVRGI LSDLNNNKLQLNQDTKKEYKITEKTVLVNSLKSFENRSNTELVTLMRNQAYYLGSLVRVL VNDKNEVTHILVLGDPKQMAVNSDEGLRVPNSMWKDVAENTAETAPYDLGTLVGKDTSKI GSYVTIGFNSDSTAAKTIKFHFSNNTGIDLAIKDSTEIYVANPYNNIMKKVSGINEALSL IGFKNYNGYRIPNVYAGYDSTSLNPTYKHISVGTDRHTAKVIVFNVVSKEQGGDLYRVVS TTRSNYVTTVENTDGKRFERDNSSNTFGFPFNYDGDLYDVIEVFGWRSNQQAEIKIDHSD VVKYPVVKVVYANSDELRVVDRYNDYTTLDIRKADIFTKLNKLEKDSVIQFRVENHKTDK ANNVAEIISILPKDTALEGSIKGVLPMVNAKQRVGKIIEVTPVDALYSNVVIDVERDLLD ADAMSGPQVFRVNKAVADKLAAFARKANMFAFKVDYVYTDKGVQTAYDFRYNDGTDKPVE SVENAVLAYTNAVDAYKKVFPASESNYAELQKLYDVVKAAQDNLTTNDIANLPGKYLFSR NPRGLEFNATTEQQKINDAKANAEARAELNKAITEANAIVEGVTESEDGTGVASPKTWAK KADIDTFKAAITAAKTVADDKTKVKADLDGAKGTLKTAQTTFAGKTTVGTK >gi|281296806|gb|ADDO01000068.1| GENE 44 49047 - 49778 504 243 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282883315|ref|ZP_06291909.1| ## NR: gi|282883315|ref|ZP_06291909.1| hypothetical protein HMPREF0628_0907 [Peptoniphilus lacrimalis 315-B] hypothetical protein HMPREF0628_0907 [Peptoniphilus lacrimalis 315-B] # 1 243 1 243 243 353 100.0 7e-96 MNQSNFKNTKDNPNKGDFPTENTKNTPNKGDCPSGTVPEKVNNCIKNSFILRHFLCFFVF LLLLIYLFLSCKEDTRTYYFLSNLKIILPALITAAGVFEGFNINRKKSFKEIVTKERIKW LHRIHNNLTEYLKLSRNGEIKREDKDKVTELYYKIIFNINHEDDIEALNAIKHYNEYIFA KELEKYILIKEGIIEIESIETHEVKKYTYYEYIKNYEELRNEVEKSFIKVFKEVWEKIKN EAD >gi|281296806|gb|ADDO01000068.1| GENE 45 49980 - 50358 217 126 aa, chain + ## HITS:1 COG:CAC0657 KEGG:ns NR:ns ## COG: CAC0657 COG3666 # Protein_GI_number: 15893945 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Clostridium acetobutylicum # 12 122 10 120 334 99 48.0 1e-21 MKTIKNTSSLTNYTLVNDTIQLRLNFNTEIYIKDDVKLRLVKNIIERMNLSELKKVYSSF GRKPTVNPVTMLQIIIFCYSEGIFSSREIEKSCKYDLRIKYLLDTELPPDHSTINRFRKK ILDLTP Prediction of potential genes in microbial genomes Time: Mon Jul 18 13:03:50 2011 Seq name: gi|281296760|gb|ADDO01000069.1| Peptoniphilus lacrimalis 315-B contig00037, whole genome shotgun sequence Length of sequence - 44551 bp Number of predicted genes - 46, with homology - 44 Number of transcription units - 27, operones - 12 average op.length - 2.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 24 - 977 597 ## PROTEIN SUPPORTED gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 2 1 Op 2 . - CDS 1030 - 2565 1826 ## COG0554 Glycerol kinase 3 1 Op 3 . - CDS 2567 - 3457 932 ## COG1307 Uncharacterized protein conserved in bacteria 4 1 Op 4 . - CDS 3505 - 5145 1682 ## COG4187 Arginine degradation protein (predicted deacylase) - Prom 5236 - 5295 11.5 + Prom 5175 - 5234 9.5 5 2 Tu 1 . + CDS 5290 - 5730 411 ## COG0590 Cytosine/adenosine deaminases + Term 5753 - 5795 8.1 - Term 5734 - 5790 13.2 6 3 Tu 1 . - CDS 5801 - 6457 731 ## Tthe_2617 S-layer domain protein - Prom 6648 - 6707 12.6 7 4 Tu 1 . + CDS 6456 - 6620 67 ## + Prom 6683 - 6742 8.3 8 5 Tu 1 . + CDS 6903 - 7421 667 ## COG0778 Nitroreductase + Term 7432 - 7465 2.2 - Term 7418 - 7453 1.0 9 6 Tu 1 . - CDS 7459 - 8823 1038 ## COG0534 Na+-driven multidrug efflux pump - Prom 8918 - 8977 9.8 + Prom 8867 - 8926 8.5 10 7 Op 1 . + CDS 9100 - 9975 739 ## COG0583 Transcriptional regulator 11 7 Op 2 . + CDS 9979 - 11094 1331 ## TepRe1_1114 hypothetical protein + Term 11098 - 11145 5.1 12 8 Op 1 . - CDS 11112 - 11651 330 ## COG0671 Membrane-associated phospholipid phosphatase - Term 11674 - 11709 -0.8 13 8 Op 2 . - CDS 11710 - 12003 323 ## BHWA1_02498 putative peptidyl-tRNA hydrolase - Prom 12034 - 12093 5.1 + Prom 11974 - 12033 6.5 14 9 Tu 1 . + CDS 12088 - 12780 607 ## gi|282883381|ref|ZP_06291974.1| hypothetical protein HMPREF0628_0950 15 10 Op 1 . - CDS 12777 - 13385 438 ## bpr_I1251 hypothetical protein 16 10 Op 2 . - CDS 13423 - 15024 1751 ## COG1283 Na+/phosphate symporter - Prom 15081 - 15140 11.3 - Term 15119 - 15151 3.0 17 11 Op 1 . - CDS 15162 - 15743 765 ## COG0693 Putative intracellular protease/amidase 18 11 Op 2 . - CDS 15795 - 16550 968 ## COG0345 Pyrroline-5-carboxylate reductase - Prom 16607 - 16666 8.6 + Prom 16562 - 16621 7.8 19 12 Op 1 7/0.000 + CDS 16645 - 17202 435 ## COG2059 Chromate transport protein ChrA 20 12 Op 2 . + CDS 17199 - 17747 553 ## COG2059 Chromate transport protein ChrA 21 12 Op 3 . + CDS 17819 - 19390 1295 ## gi|282883391|ref|ZP_06291984.1| hypothetical protein HMPREF0628_0956 - Term 19506 - 19541 3.1 22 13 Tu 1 . - CDS 19565 - 20809 1326 ## COG0786 Na+/glutamate symporter - Prom 20845 - 20904 11.6 + Prom 20987 - 21046 10.7 23 14 Tu 1 . + CDS 21092 - 21745 721 ## TDE2199 racemase + Term 21843 - 21892 5.9 + Prom 21852 - 21911 7.7 24 15 Tu 1 . + CDS 21957 - 22994 586 ## Lebu_1381 acyltransferase 3 + Term 23212 - 23255 7.1 - Term 23195 - 23248 4.2 25 16 Tu 1 . - CDS 23354 - 25243 2020 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains - Prom 25264 - 25323 12.0 + Prom 25169 - 25228 9.6 26 17 Op 1 . + CDS 25323 - 25952 691 ## COG2344 AT-rich DNA-binding protein + Term 25995 - 26034 5.4 + Prom 25973 - 26032 4.2 27 17 Op 2 . + CDS 26052 - 26933 860 ## COG0122 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase 28 17 Op 3 . + CDS 26930 - 27625 810 ## COG1811 Uncharacterized membrane protein, possible Na+ channel or pump + Term 27678 - 27722 6.4 29 18 Op 1 . + CDS 28140 - 28247 83 ## 30 18 Op 2 . + CDS 28244 - 28531 260 ## gi|282883382|ref|ZP_06291975.1| putative O-antigen transporter permease + Prom 28584 - 28643 14.9 31 19 Op 1 9/0.000 + CDS 28760 - 29800 672 ## COG2972 Predicted signal transduction protein with a C-terminal ATPase domain 32 19 Op 2 . + CDS 29806 - 30534 649 ## COG3279 Response regulator of the LytR/AlgR family + Prom 30561 - 30620 8.4 33 20 Tu 1 . + CDS 30640 - 31014 209 ## gi|282883366|ref|ZP_06291959.1| NADH dehydrogenase subunit 6 + Prom 31273 - 31332 10.3 34 21 Op 1 41/0.000 + CDS 31412 - 31693 499 ## COG0234 Co-chaperonin GroES (HSP10) 35 21 Op 2 . + CDS 31710 - 33332 1580 ## PROTEIN SUPPORTED gi|167855908|ref|ZP_02478658.1| 50S ribosomal protein L28 + Term 33349 - 33385 5.1 + Prom 33364 - 33423 10.3 36 22 Tu 1 . + CDS 33559 - 34614 997 ## COG1609 Transcriptional regulators + Term 34620 - 34660 4.3 - Term 34608 - 34648 5.1 37 23 Tu 1 . - CDS 34655 - 35545 1196 ## COG3588 Fructose-1,6-bisphosphate aldolase - Prom 35657 - 35716 9.3 + Prom 35626 - 35685 4.7 38 24 Op 1 . + CDS 35705 - 36298 616 ## COG3341 Predicted double-stranded RNA/RNA-DNA hybrid binding protein 39 24 Op 2 . + CDS 36295 - 36714 580 ## COG2131 Deoxycytidylate deaminase 40 24 Op 3 . + CDS 36723 - 37133 398 ## COG1970 Large-conductance mechanosensitive channel 41 24 Op 4 . + CDS 37138 - 38181 1217 ## Thebr_0725 patatin 42 24 Op 5 . + CDS 38174 - 38788 451 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes + Term 38815 - 38859 5.5 + Prom 38799 - 38858 9.8 43 25 Tu 1 . + CDS 39038 - 40042 1218 ## COG3584 Uncharacterized protein conserved in bacteria + Term 40093 - 40134 5.5 + Prom 40124 - 40183 9.6 44 26 Tu 1 . + CDS 40207 - 41106 663 ## gi|282883359|ref|ZP_06291952.1| hypothetical protein HMPREF0628_0979 + Term 41192 - 41222 0.2 - Term 41180 - 41210 0.2 45 27 Op 1 . - CDS 41246 - 43774 1631 ## COG2898 Uncharacterized conserved protein 46 27 Op 2 . - CDS 43774 - 44490 576 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) Predicted protein(s) >gi|281296760|gb|ADDO01000069.1| GENE 1 24 - 977 597 317 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 [Streptococcus pneumoniae SP6-BS73] # 1 303 1 304 306 234 43 7e-61 MYDIIILGAGPAGLSAGIYGARSKKKVLILEKAIDGGQMAETISIENYPGIDKISGAELG QKMAEQAKSFGAEIVSDQVESIDIKGDIKKIQGKLGSYEAKSLIIAQGSIPRPLGAKGEE KFKGKGISFCATCDAAFYEDLDVYVVGGGDAAIQEALFIANFAKKVHIIHRRDRLRAAQD IQERAFNNKKIDFIWDTCVDEVKGDKIANELVIRNLKTGEVKSIKSDEPFGIFVFIGYLP NTDLYKDILDLDDKGYIITDDEMRTKIDGVFAAGDIRKKTIRQVVTAAGDGAIAAMNAQK YVDEKEGKLYEGFKENK >gi|281296760|gb|ADDO01000069.1| GENE 2 1030 - 2565 1826 511 aa, chain - ## HITS:1 COG:STM4086 KEGG:ns NR:ns ## COG: STM4086 COG0554 # Protein_GI_number: 16767352 # Func_class: C Energy production and conversion # Function: Glycerol kinase # Organism: Salmonella typhimurium LT2 # 17 511 4 499 502 609 56.0 1e-174 MAAFAAIFLHNKGVNMKKYIMAFDAGTTSARTILFNKDGEIVSQASKEFTQYFPHPGWVE EDASEIWSSQIGTAVEAMSKISATADEISAIGIANQRETTIVWDKNTGDAIYNAIVWQCK RTAPLCDKLKKDELTDMIKKKTGLVIDPYFSATKIKWILDNVPFAREKAQKGELLFGTVD SYLIYKLTGGLCHITDYSNASRTMLFNIKDLKWDDELLKIFDIPKSMLPQVKNSSEIYGK SSSKFLGGEIPIAGILGDQQASLFGQACFNKAMAKATYGTGAFILMNTGNEIVNSNNGLV TTIAWSYKDKVTYALEGSIFECGSAINWLRDDLKILDAADDSEYMATKVKDTCGCFVVPA FSGLGAPYWNQYARGTIVGLTRAVSKYHIVRATLESLAYLSKDVLNAMEEDAGFKIEELK VDGGVSKNNFIMQFLSDMTGISVLRPKIVELTALGAAYMAGLGTGFWKDLEDAKNILKID MSFKSNFDKKKREEKIKAWHKAVKTSLYYKE >gi|281296760|gb|ADDO01000069.1| GENE 3 2567 - 3457 932 296 aa, chain - ## HITS:1 COG:BS_yitS KEGG:ns NR:ns ## COG: BS_yitS COG1307 # Protein_GI_number: 16078175 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 5 286 1 283 283 134 30.0 3e-31 MRENMNIKIITDNACDLTKQEIEEFDIEIMHIALISSKADEVDKNIEVEEIFKRQGQGES FKTSQIPEFEYLECFEKYAKEDIPFIYLSLSSGLTGGYANSCMALKNIKEKYPNIKASVI DTGSASVGFGLFTYLMAKANKKGKTFDELLEFADFLQENISHIFTVFDLKYLYQGGRIIK VGKNITKMLNIMPIITFSNKKLKIAEIVRGKKKTIKSMVNTMERDMKRPFKDEIIMPVYG QDMEIIGNFEEFLKEAGANKILPHQIGTVIASHVGPDIIGASYLKEEIPEKFKDIL >gi|281296760|gb|ADDO01000069.1| GENE 4 3505 - 5145 1682 546 aa, chain - ## HITS:1 COG:CAC0367 KEGG:ns NR:ns ## COG: CAC0367 COG4187 # Protein_GI_number: 15893658 # Func_class: E Amino acid transport and metabolism # Function: Arginine degradation protein (predicted deacylase) # Organism: Clostridium acetobutylicum # 6 545 4 549 549 253 30.0 8e-67 MKQDNLGNRIEELAIEYGKVVTHTGTELEQNSVNFFQKWFKHLEKIAKLPIETKISPVKN DHLNRSVCYALLQGKSKDTVVLIGHSDTVDIEDFGKIKDIAYEPEKIKEAFKNGQVDVLD KVKKDLTDEWLFGRGICDMKAGGAIEMALFEKYVQDEDFPGSVLLVAVCDEENLSAGMRH LSYILDDLNKRYGLNYKLIIDGEPHERIDKNTMIIYDGSIGKIMPICLTRGKLTHVGQVY QGLNPISLLSEIVSLTDLNQDFIETRGNTTSPAPTWLYQKDRKYVYDVSLPITSGGYMSV LPLTKTPKEIMEKLKEISVEAFENVINRTDKSFKKYLQASEEEGKIEYPTKVFIFEELVR EIKKENKVDIEKILKDTEDKLTKMVNNGEISIPEAVFRLMEELLSNYSYRGPVVLWGICP PYYPSVNNLDLKNYKEMQELVEKMKDFTKENLDLKLDVQNYFTGICDLSYAMLTLDDGEL SYVKDNFLMWNTYPINLDLIRKYSMPVFNIGPWGKDLHKYTERVSRSDLKYNTPKLMDFV IKEILK >gi|281296760|gb|ADDO01000069.1| GENE 5 5290 - 5730 411 146 aa, chain + ## HITS:1 COG:lin2867 KEGG:ns NR:ns ## COG: lin2867 COG0590 # Protein_GI_number: 16801927 # Func_class: F Nucleotide transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: Cytosine/adenosine deaminases # Organism: Listeria innocua # 1 146 7 152 154 135 45.0 3e-32 MKKALELAKISYENFDVPVGCVIVKDKKIIGKGYNQKEKNKNPLCHAEINAINSACKNLN SYHLEDCDMYVTLEPCLMCVGAIINARIKNLYFGAYNYRFGAVLSHVELLKDGGFNHKTK YQGGILKEESARLLNSFFEKLRNSSR >gi|281296760|gb|ADDO01000069.1| GENE 6 5801 - 6457 731 218 aa, chain - ## HITS:1 COG:no KEGG:Tthe_2617 NR:ns ## KEGG: Tthe_2617 # Name: not_defined # Def: S-layer domain protein # Organism: T.thermosaccharolyticum # Pathway: not_defined # 3 192 9 206 479 127 35.0 4e-28 MKRKFVVIAFLSLTLLTGGVYAKSFRDTNNHWAKNAVDNITNLNVMNGYENSYFKPDQLM KKVEFYSLVNKLSSLNKTYTVTFSDVNPNDWYYNDVAKAIKAGYLIPTMGKLYPDEPITR EEVCEILGYMYGLRKNKDVLKEFHDYNEISESAKGYVGAMVKANIINGYSQNIFAPKRGM TRAEIATVVNSLMEEYNRPQGKVVIDSKIKFGNRNLYE >gi|281296760|gb|ADDO01000069.1| GENE 7 6456 - 6620 67 54 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTSTLLRTSIYIITSIVKIKFKILLQILVFVILVKYKKRVLICTNTAPSREEKR >gi|281296760|gb|ADDO01000069.1| GENE 8 6903 - 7421 667 172 aa, chain + ## HITS:1 COG:CAC3555 KEGG:ns NR:ns ## COG: CAC3555 COG0778 # Protein_GI_number: 15896791 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Clostridium acetobutylicum # 2 172 1 172 174 92 28.0 3e-19 MLTDIIKNRRTVRAFKDKKVERETLEKLLMYASMAPSNGNAHPVEFLVIDDKEKIDELSN MDSYSTLYLKECPCVILFMGNTELSTTWLEECAIDASYFQLLAEEEGLSTSWINVVRGNT SGKISYEEYFEKNFGVKKPYKPMCLIPVGYKKRGTKAHEDFDVTSKVHYNEF >gi|281296760|gb|ADDO01000069.1| GENE 9 7459 - 8823 1038 454 aa, chain - ## HITS:1 COG:FN0667 KEGG:ns NR:ns ## COG: FN0667 COG0534 # Protein_GI_number: 19704002 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Fusobacterium nucleatum # 6 412 4 410 426 236 32.0 5e-62 MVKLKEKFSKNISLTEGSIFEGLIIFSIPLILTNFLQQLYNTADLMIVGRFAGKNPMAAV GATGPLSTLLVGLFLGLTTGAGVIISTYYGMNDAKKLRDSVTCAYFLAILSGLIITVGGI LTTPLLLRLLETPDEIMTDAINYMRIFYLGATPLIIYNMGASISIATGDSKRPFNFLLVA ALVNIVLDFVFVGYFKMSVIGAGIATFSAQAVSAILVTLNLTNSDSAFRLRIKKISYHKE IAKQIFLIGIPTGLQSSFISFTNVVIQAKINSFGSNVIAGISAEGRIDGFVFMTLQAVAL AATTYAGQNFGAKRIDRIKEGVKVTVNITLAIALVLSLISIVFANQLIAAFNPNEEVVFY GAKMLRIICLAVWAFGLSESLSAFIRGSGEALAPMLISFVWLCISRIAFIYLPIKGWSES IDPLCWSYPFSYICNFIVTYIYYKFGKWRKKASL >gi|281296760|gb|ADDO01000069.1| GENE 10 9100 - 9975 739 291 aa, chain + ## HITS:1 COG:PA3398 KEGG:ns NR:ns ## COG: PA3398 COG0583 # Protein_GI_number: 15598594 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Pseudomonas aeruginosa # 2 286 4 292 308 105 22.0 8e-23 MTIRDLEIFVEVVRTKNMSQAAKNLSISQPTVSHAISQIEKEYSVKLFDRVSKKLYLTDV SLKLFDYAMELIEKFDQIILFLQSSSKIYDLNLGLSSSFSSDFLKNIVFEYEKLNPRVQI RTSVKGKTEIIKDSRKGFINLGIVEGDIAEDGCQCYNLYEDQFCLIVNKNHRLANKKEID IKDINGEKFVLGEFDDEDRKALLSILRDHEVIIDLKFMCLSNDMVLNIVKSGQAISFFPK FLSHFEDLVSIPIKNVNLKRSYKAIVKKDRQISQVVEDFIDFTKEKLNEEI >gi|281296760|gb|ADDO01000069.1| GENE 11 9979 - 11094 1331 371 aa, chain + ## HITS:1 COG:no KEGG:TepRe1_1114 NR:ns ## KEGG: TepRe1_1114 # Name: not_defined # Def: hypothetical protein # Organism: Tepidanaerobacter_Re1 # Pathway: not_defined # 1 344 1 338 352 219 34.0 2e-55 MRFKARKLILFISVGLLIFTLSACKDLRNDKDANSGKDVKKEESIDEKEVIRSPFTGLET TEDTLRRRPFAVMLDNHFDAIPQSGLNQSDMIYEFKAEGEFTRYMAIFQSQSPSVIGPIR SARPYFVDTAKEYNAIYAHWGGSEMGYAEIPKIKVDDLDGIALEGITFYRNKDVKKKRPH DGYSSIDLMTKQSEKYKYDLVSDNKAFNFDTSENLDEIKKQMGDEICNSITLNFFKHYKE KYEYDANTNKYRIIRNEKNVTDEADGKDVLVSNLIVEFASSKVTGPLGTLTIDIVGQGKG LLLTNGKIININWQKDDPSQRTKFTTQDGKEIILSPGQTWVSVLDPKDIIEKEPSQEKNA DENSSENVESK >gi|281296760|gb|ADDO01000069.1| GENE 12 11112 - 11651 330 179 aa, chain - ## HITS:1 COG:CAC2438 KEGG:ns NR:ns ## COG: CAC2438 COG0671 # Protein_GI_number: 15895703 # Func_class: I Lipid transport and metabolism # Function: Membrane-associated phospholipid phosphatase # Organism: Clostridium acetobutylicum # 18 171 24 176 180 102 40.0 5e-22 MNFEFNILYFIHSFQSPLLNIVMKFVTKLGNGGMVWIILALAFFISKDKEKKRLALTIIL ALCIELVLGSFILKPIFKRQRPSWIVNIPLLIKNPKDYSFPSGHTASSIATSFVIYKYKK SWGIISFILASLIAFSRLYLFVHFPTDVLGGIILGLVSANFALLIKNKIEMKNKKLPSH >gi|281296760|gb|ADDO01000069.1| GENE 13 11710 - 12003 323 97 aa, chain - ## HITS:1 COG:no KEGG:BHWA1_02498 NR:ns ## KEGG: BHWA1_02498 # Name: pth # Def: putative peptidyl-tRNA hydrolase # Organism: B.hyodysenteriae # Pathway: not_defined # 1 94 205 297 297 65 39.0 7e-10 MKFFTRKILTKENYNKALELLKELRDKSRLEQGCIYYDLYSDVDSPYTIIINEEWENLEF QQKHAQSEHFKRIVPLVAELVKEKSPLIRFDELKEIQ >gi|281296760|gb|ADDO01000069.1| GENE 14 12088 - 12780 607 230 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282883381|ref|ZP_06291974.1| ## NR: gi|282883381|ref|ZP_06291974.1| hypothetical protein HMPREF0628_0950 [Peptoniphilus lacrimalis 315-B] hypothetical protein HMPREF0628_0950 [Peptoniphilus lacrimalis 315-B] # 1 230 1 230 230 360 100.0 4e-98 MNRKYLSFLVSELIFLKDDTIMHLIPKTECQYNKIFAKLEDICNDLNLNIRMIRRKLDLL RECDSLYVNEKVEKEFKIEIEENKIKKNKRIFTYPFEKIPQSRKKKCQDLYRSLISKYSP KLYEFPLENFENIRQAFYAYDLVSLKNMDSYKSHLELKLSTKELENLRFRLEIEISDLYR SFPLNKISLLEDSDAIIYNLKRLENIYNDYVELYGSLEEALNISIAKSLS >gi|281296760|gb|ADDO01000069.1| GENE 15 12777 - 13385 438 202 aa, chain - ## HITS:1 COG:no KEGG:bpr_I1251 NR:ns ## KEGG: bpr_I1251 # Name: not_defined # Def: hypothetical protein # Organism: B.proteoclasticus # Pathway: not_defined # 11 184 9 192 210 105 35.0 9e-22 MINFDIKNKRISDIDSYINKYYNGAELIEEKSLDLPTYTIKDITNDRNACSLVSLTRLIN YYYKDIDPMEIYNFIIIFARKRGYYEEYGTFPNFISEIGNSYFKLKKIPLKCKGIYFTNF YIHIKNQIDKDRPVIMNIGEGYYKNHSLTIRGYKIFLYKKLKIKILEVIDGWSKEKRYID YSALNGLNSLGAYSFNLIKFND >gi|281296760|gb|ADDO01000069.1| GENE 16 13423 - 15024 1751 533 aa, chain - ## HITS:1 COG:SP0496 KEGG:ns NR:ns ## COG: SP0496 COG1283 # Protein_GI_number: 15900410 # Func_class: P Inorganic ion transport and metabolism # Function: Na+/phosphate symporter # Organism: Streptococcus pneumoniae TIGR4 # 1 526 1 533 543 304 35.0 3e-82 MSINYIFGLLGGLALFLYGMELMSRGLELVAGARLRTIIEKMTSNLFKSILVGTIVTAII QSSSATTVMVVGFVNAGVMNIYQAVGIIMGANIGTTITGQLVALNITLMAPLIAFIGFVM FTFSKKKTKKYLGQVIIGLGFLFMGLQFMSKSMEPLRYYKGFINLMTKFSNPILGVLVGA GITAIIQSSSASVGILQAISNQGLIPLSSSMFIVCGFNIGTCITSVLSAIGTSKNAQRTA AVHVLFNLIGTIIFIIISFFIPIDKIIISFTRNLPAAEVANLHTLFNVGTTILLFPFSKK LADLSKLIIVGDDNDYDEMKLKYINPSVKKDPTIMLTDIKAEINRMFKICRNNFMETVSL ISNFSEEKYEGIYKREDVINLLNKEITRYIITGLGKEMDEKTSNNFAGYLRIVRDLERVG DHCKNIADSTKQMDEEMLSFSPMTSGEIESLRGTIYQIFETLREDLTAREVDIDVKRELQ TLVKDVDTIRNAHMERMKTGVCNPESGLNYEKMLTAFDRIGSYLSNAVRLYCN >gi|281296760|gb|ADDO01000069.1| GENE 17 15162 - 15743 765 193 aa, chain - ## HITS:1 COG:CAC1629 KEGG:ns NR:ns ## COG: CAC1629 COG0693 # Protein_GI_number: 15894907 # Func_class: R General function prediction only # Function: Putative intracellular protease/amidase # Organism: Clostridium acetobutylicum # 4 185 3 183 188 142 42.0 3e-34 MKDLLVFLADGFEEVEALSVVDILRRGGLSVDTCSIKDSKKVTSSHQVTVLADVHIDDIK IDNYKACYIPGGQPGATNLQNDRRIIQIVEMFKEQGKLVAAICAGPQVLDTAGVLTDEKF TCYPGVEERLKTKKRLDVPVVVDDNIITAMGPAMAPFLGYELLKVLSGEKKAKEVGDGFL INKIKEFIKEDII >gi|281296760|gb|ADDO01000069.1| GENE 18 15795 - 16550 968 251 aa, chain - ## HITS:1 COG:CAC3252 KEGG:ns NR:ns ## COG: CAC3252 COG0345 # Protein_GI_number: 15896497 # Func_class: E Amino acid transport and metabolism # Function: Pyrroline-5-carboxylate reductase # Organism: Clostridium acetobutylicum # 2 245 4 257 270 189 42.0 3e-48 MKIGIIGLGSMGGAILKGLTQSGIEVNFHSPHFDKNEKIRNASFYESNSLVVKNSDLIIL TVKPNVYRQVLEEIKDFVEDKIIVSVTSKFGFEELRQILGNKRFIQMMPNTPALVKESMT GICPDQSIKKEEVEEIIKLFNSFGKTVVIKKEDFLTFEAVCGCLPAFIYVIIEALADGAV LNGMKRDEAYQYISQTVLGSAKMILETKTHPGILKDKVTTPGGSTIVGIKSLEDSGIRGS LIDAICNIINR >gi|281296760|gb|ADDO01000069.1| GENE 19 16645 - 17202 435 185 aa, chain + ## HITS:1 COG:FN0712 KEGG:ns NR:ns ## COG: FN0712 COG2059 # Protein_GI_number: 19704047 # Func_class: P Inorganic ion transport and metabolism # Function: Chromate transport protein ChrA # Organism: Fusobacterium nucleatum # 1 183 1 181 186 82 28.0 4e-16 MKKISLVKLFFTFFKINAITFGGGYTIVPVIKDIFVEDLKLINEDDMMDIVALAQGGPGA MAISASILTGYKLRGPIGAFICLVASVLPCLIILSLIAGFYQEFKENFYINAALQGISGV ISAVLFVTVIRMGLKSYSKYPGFTILLIVIAFVLGYFTKINAALIILILALIGVGFFSFV DRRYS >gi|281296760|gb|ADDO01000069.1| GENE 20 17199 - 17747 553 182 aa, chain + ## HITS:1 COG:FN0713 KEGG:ns NR:ns ## COG: FN0713 COG2059 # Protein_GI_number: 19704048 # Func_class: P Inorganic ion transport and metabolism # Function: Chromate transport protein ChrA # Organism: Fusobacterium nucleatum # 4 182 6 176 176 90 39.0 2e-18 MIALFLVFVKIGCFAFGGGYAVIPLISKFVVEENAWLSMRELIDLISISQMTPGPIAINS ATFVGQKVYGFVGSIIATAGFVLPQLVLMLVLGYFLFTKNKKFKILDYGLNGIKAGIVSL IFITALDLFRTSVFADKISFSSINFAALLTFIPALILYYKKVGLFKLIIMGAVCGIVINL II >gi|281296760|gb|ADDO01000069.1| GENE 21 17819 - 19390 1295 523 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282883391|ref|ZP_06291984.1| ## NR: gi|282883391|ref|ZP_06291984.1| hypothetical protein HMPREF0628_0956 [Peptoniphilus lacrimalis 315-B] hypothetical protein HMPREF0628_0956 [Peptoniphilus lacrimalis 315-B] # 1 523 1 523 523 931 100.0 0 MENFRTLPTTIYFNPNETLQISKAELLSEEFSLAIDILNMGEETVNKITLSVKFKNFSGE YLFNGGEFYFSSDVEILPHSKYYLKPFSLDERFSSSRSIDIRIDSYNANKGVKKISMDGE VQILQPIIPEKKLEKIKEILGPDINTYGENLLDYWRCICGAINPKDIEECRFCKRNKNFV LNNLTEALINSKIVNEILQTSDRSVIEMESLERNMTRSNLTKVAPTKESITKSRINDLSL SYKKTIKKTKNIFNTIFKILLALVIFFGLFLFGRKIYEKNRLAKAEILIEEGDYTRAENI YKNISRINPSIDLSKEFDKANSLIKSDNYFKNANREVLDGDYIEAVKSLNKVIPQDEKNF TKAGEKLEELEDIILQKAIGFYHKGDKDNAIGLIKSYIQAEPLSVRAENILKDIKVNKNL IKVSEVIDEDYEKSTDDANAVSMKELAGSLLNTYQKVTMKMANLRKEADADSDIITTLPQ GSELYIEKTKIEGSTRVWCYVQAKNIENEKSYYGWISNKVLMP >gi|281296760|gb|ADDO01000069.1| GENE 22 19565 - 20809 1326 414 aa, chain - ## HITS:1 COG:NMA0183 KEGG:ns NR:ns ## COG: NMA0183 COG0786 # Protein_GI_number: 15793211 # Func_class: E Amino acid transport and metabolism # Function: Na+/glutamate symporter # Organism: Neisseria meningitidis Z2491 # 5 412 4 401 404 274 39.0 2e-73 MLTIKLNMMQAVALAIVVYYIGKFLRGKIKFFQTFCVPAPVIGGFLFALIHLGLKLAGIC QFEMDTTLQDPFMMVFFTAIGVGANLETLKKGGRGFVLFLIISVVLVFLQNTIGMAIAIG LKENPLMGLICGSISMVGGHGSAGAWGPNFEQNFGYQNATVYAMAAATFGVIMGSLIGGP IGSSLIKRHNLKPVEDRKKIESYDEVLENLHDQENGYEHLPLTAEDFIKVLGLIFISIGL GAILQKFIYDHISIKGTPLSLPAYVTSMIISGIYVNTIGKKGKMAVDQRAAGICGDVGLN VFLVMALTNIDLLTLKDVAGNMLIILGAQTVLMALFAYLVCYKVMGKNYDAAVLAGGMCG FGMGATYNALANMDSITEKYGPSPTAYFILPMVGAFAIDIINSLFITFFSNLSF >gi|281296760|gb|ADDO01000069.1| GENE 23 21092 - 21745 721 217 aa, chain + ## HITS:1 COG:no KEGG:TDE2199 NR:ns ## KEGG: TDE2199 # Name: not_defined # Def: racemase # Organism: T.denticola # Pathway: not_defined # 12 215 2 206 224 177 47.0 2e-43 MKVAVFAGTPKDSQMGQDILIEKDFEARKFFLADSPKEQSRLQYYSKEILEKKFKNLSRQ ALSWGAEKFFIYCNSLSAALDVKRLSKELDIQIICPFDVYENLDEKYKNIFILAANALAA YKEDEILSKTFHRNIISMGNLSIVENIEVDRPAEEIIEKLNLKGLMNYINNIKDEKYKIQ AIILGCTHFPYLKDELKKYTSIDIIDPATEMIKLLKN >gi|281296760|gb|ADDO01000069.1| GENE 24 21957 - 22994 586 345 aa, chain + ## HITS:1 COG:no KEGG:Lebu_1381 NR:ns ## KEGG: Lebu_1381 # Name: not_defined # Def: acyltransferase 3 # Organism: L.buccalis # Pathway: not_defined # 2 331 5 349 375 70 26.0 7e-11 MKQRDYNLDLVKTLAIIATVGIHLNACGSICQIYSKTWNFFVLFGSLLRFCVPVFCMATG YLLYTKDSIDINKILKKVLKFAIIFVLAEIVYRISYCPYMKYLYGEKIVLHNIIEDILQG NIKPHLYFLQIISLVYLFAPLGILIVKNENKELSYLLKLWIILSMCTLFLADTFNIRIFK IFNIYILNGAYNFIIYAMLGAYIRKYKKIHVNFNTVLCILGFFIGYLGIVFLMWKLSKTS GQSDYSIWDSVNIFTFLMSYSLFVLALKVKINSNKIKKILTLVSKNTLGIYLVHVLFTDF IHNMDLDYINFFGIEKILILFIDLFIVLFLSLGISILAKKIFQRN >gi|281296760|gb|ADDO01000069.1| GENE 25 23354 - 25243 2020 629 aa, chain - ## HITS:1 COG:CAC2714 KEGG:ns NR:ns ## COG: CAC2714 COG0488 # Protein_GI_number: 15895971 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Clostridium acetobutylicum # 1 622 1 634 643 486 46.0 1e-137 MAEILLKDIKKIFIDKVILQKANLTVESGDKIGLIGANGAGKTTLFKIILGEVSYDDGDI FAKKALKIGYLEQQLNLLNSGKVYDTLLEIFSDLIAMEDRLKYLTEQISKDPHSKELLET YSKLLEDFNNKGGYSYPSMIRGTLIGLGFKEEDFDKDIGTLSGGQKARVALAKLLLEDSD ILLLDEPTNHLDIEAINWLEKFLKDYKKALIVISHDRYFLNNVVNKIVLLEHGITTTYKG NYDYYVKKRKLDLEILKKQYEDQQKEIKRQEEIIKRFLNLGRDRFIKQGKSRKKLLDAMT KMPAPTNEKKTKISFTTEIESGKEVLQIEGLKKTFKDKLLFENLSLKVFKKDLIGLIGPN GIGKSTLFKIILGKMQKDQGKIEIGTNVKIAYFDQELKNLNKENTVIDEIWDAYPKLDHF QLRKYLAQFLFVGDDIFKSISELSGGEMGRLSLLKIMLSKANFLLLDEPTNHLDIDSKEI LEDALNLYEGTVLAISHDRYFLNKVANKIFAMDKCGIEEYLGNYDYYLEKTQNTVENEDE YISKTQLQKKKKEDQKIRQEKKLLKGKKQKMEDDIKTLEENLSTIDAKLTNNSNYEDYKE ILKLTEDRQKLENKLNALYEEWILLDDKV >gi|281296760|gb|ADDO01000069.1| GENE 26 25323 - 25952 691 209 aa, chain + ## HITS:1 COG:CAC2713 KEGG:ns NR:ns ## COG: CAC2713 COG2344 # Protein_GI_number: 15895970 # Func_class: R General function prediction only # Function: AT-rich DNA-binding protein # Organism: Clostridium acetobutylicum # 8 209 7 211 214 209 52.0 4e-54 MAKLSNKISDTVIRRMPVYHRYLEDLINRGINRVSSQELSELTGFTASQIRQDFNNFGGF GQQGYGYNTYELKSQIDLILGVDKSYNTILVGAGRLGSAIARYIGFSKSGFNIKALFDVK NLPNLEGIPVLPMDKLKSFIIENKIQIAIITVPKSQAEKVGKDLIDAGIKGIWNFAPFDL KAPKDVVVENIRLNDSLLILSYYMKNIDK >gi|281296760|gb|ADDO01000069.1| GENE 27 26052 - 26933 860 293 aa, chain + ## HITS:1 COG:CAC2707 KEGG:ns NR:ns ## COG: CAC2707 COG0122 # Protein_GI_number: 15895964 # Func_class: L Replication, recombination and repair # Function: 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase # Organism: Clostridium acetobutylicum # 8 289 11 290 292 243 46.0 4e-64 MEITYYSDHVHIKNLIEFDPKDIFTCGQCFRFYEEDDESFTIVAYGKVLNIKKEDDNIYI IGSNEEDFKNIWYKYFDLEKDYKKIEKALSIDPVMKKAISYGKGIRILNQEKFETIISFI ISANNGISRIRKSIEKISNLYGNYITEDKNRIYYSFPSPSVLKDIDPLEIREKTKVGFRD KRIVESSKMIYNKDINIEEISKLSLQAQREELMKLPGVGPKVADCILLFSFERNESFPVD VWIKRVMEELYIKEEIQKKEVAQKGREIFGAYAGFANQYLFYYGRENKIGVKK >gi|281296760|gb|ADDO01000069.1| GENE 28 26930 - 27625 810 231 aa, chain + ## HITS:1 COG:AF1248 KEGG:ns NR:ns ## COG: AF1248 COG1811 # Protein_GI_number: 11498847 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein, possible Na+ channel or pump # Organism: Archaeoglobus fulgidus # 1 222 2 219 228 123 35.0 3e-28 MIGVIANALAVLILGFAGSKIGDKISKSLQDTILAFIPIAIMMIGVNAGLKGSTLIIIVS LVIGIVIGEKLDLEGSVNKLGEKFKQLLIKNPEDNDSKFVEGYVSATLIFCMGSMGILGS LDAGIRGNSDILLAKASIDGITALILASTMGIGVAVSGFSLLIYQGTLTILASFLAPIFS ESVIANISGIGGIMIFAIGLKMLDVKNFKIANTLPALLVPLIYQFILNIIS >gi|281296760|gb|ADDO01000069.1| GENE 29 28140 - 28247 83 35 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKKFFIFTFTLLLMLTQFTFAKEYSNDYLKVQLII >gi|281296760|gb|ADDO01000069.1| GENE 30 28244 - 28531 260 95 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282883382|ref|ZP_06291975.1| ## NR: gi|282883382|ref|ZP_06291975.1| putative O-antigen transporter permease [Peptoniphilus lacrimalis 315-B] putative O-antigen transporter permease [Peptoniphilus lacrimalis 315-B] # 21 95 1 75 75 115 100.0 1e-24 MNNNFKLTRDFYIICIGFMLMFFGKKGPNFAGVGFVDVYNLLYLFLGYNHPLLNPLIIIN EYISYVTCFIGFLVFVVGLILFIKDLFNIKNNRSE >gi|281296760|gb|ADDO01000069.1| GENE 31 28760 - 29800 672 346 aa, chain + ## HITS:1 COG:SA1843 KEGG:ns NR:ns ## COG: SA1843 COG2972 # Protein_GI_number: 15927613 # Func_class: T Signal transduction mechanisms # Function: Predicted signal transduction protein with a C-terminal ATPase domain # Organism: Staphylococcus aureus N315 # 3 345 14 368 371 107 27.0 4e-23 MKKLKYVSSAILFSIILSFISYYIGNFIVFLKKIESTKIAFTLIDLFIICPSGILYKKYQ GKLMSLNLILPIFLDMFFIFIYFYSIRSRCNSPLFIAEYSFKNDIFAIFFICIFSIPFII IGNILGYNIENKKIKNKENKLISTYYKDLDKTNQKLRKNQHDIKNIFLSLSGLIEKDDIY SLKKYFRENFKAYYDKILVDEDYISELSKINLPLLRGLIYEKISLAKSLNLDIFLRIPVR IEEVKIDELDLVKLLGILLDNAIEEVKTHSNSYIIIDILKTNKATTFAVENSITKEKVDV ENLLSTKGENRGFGLLNLREIINSYDNIDFKTYSKDFKFVQIISIR >gi|281296760|gb|ADDO01000069.1| GENE 32 29806 - 30534 649 242 aa, chain + ## HITS:1 COG:CAC0081 KEGG:ns NR:ns ## COG: CAC0081 COG3279 # Protein_GI_number: 15893377 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Response regulator of the LytR/AlgR family # Organism: Clostridium acetobutylicum # 1 235 1 241 241 105 29.0 7e-23 MIPIIICEDDDVQREFLENFIRSFLEKENFKGEILLSSSSAKEVISFIVNNSIKKAIYIL DIELKNNENGLLLAEEIKEYDRSSYIIFLTGHESYLKESFLFKTEALDFILKSDENTLRK RLTQDINYILKNETYPIISFTYKNEKINLPISKINYISTSYFDHELIIHAIDKNYSSRGN LKQIAYDFPEFLFIHRSIVVNSSNIFDINFKKRLIIFKNLDEVRGSVRKFKNFLEVYKGK VR >gi|281296760|gb|ADDO01000069.1| GENE 33 30640 - 31014 209 124 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282883366|ref|ZP_06291959.1| ## NR: gi|282883366|ref|ZP_06291959.1| NADH dehydrogenase subunit 6 [Peptoniphilus lacrimalis 315-B] NADH dehydrogenase subunit 6 [Peptoniphilus lacrimalis 315-B] # 1 124 1 124 124 130 100.0 3e-29 MKKNNSNSYIFHISILFLLIISFFLDKLTLVGLKTTFSNKYFIYSLIIKFLQILFLGFTI NILAINLQKRNDKFLFTSLFISLISLAFIVGLVFKGYKLIKMIFVLIIIISQLICQILRN KKIL >gi|281296760|gb|ADDO01000069.1| GENE 34 31412 - 31693 499 93 aa, chain + ## HITS:1 COG:NMB1973 KEGG:ns NR:ns ## COG: NMB1973 COG0234 # Protein_GI_number: 15677803 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Co-chaperonin GroES (HSP10) # Organism: Neisseria meningitidis MC58 # 1 93 1 95 96 75 43.0 2e-14 MNLRPLDDKIVIKKIEMEERTASGIVLPSSAKEESNVAEIIALGNKIDKDEDMKGLLKVG DKVVFSKYAGSEIELEKEKFTIIKFADVLAVIE >gi|281296760|gb|ADDO01000069.1| GENE 35 31710 - 33332 1580 540 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167855908|ref|ZP_02478658.1| 50S ribosomal protein L28 [Haemophilus parasuis 29755] # 2 539 3 540 547 613 58 1e-175 MAKEIKFSEDARAGLIEGINKLANTVKVTLGPKGRNVILDKEYGTPLITNDGVTIAREIE CEDKFENMGAQLLKEVATKTNDVAGDGTTTATLLAQAITLEGMKNLAAGANPMVLQKGIR KAVDKAVETIKKYSKSVDSKDEIAQVAAVSAADEQIGKLISEAMEKVGNDGVITVEESKS MGTSLDVVEGMQFDRGYLSPYMVTDSEKMVAELDDPYILITDKKISNIQEILPLLEKVLQ QSKPLLIIAEDIDGEALATLVVNSLRGTLNVVGVKAPGYGDRRKDMLQDIAILTGGTVVS TDLGQDLKDTTIEMLGHCGKVRVEKELTVIVNGSGEKEAIDKRIGQIRGQIEETDSDFDR EKLQERLAKLVGGVAVIQVGAATEVELKERKLRIEDALSATRAAVEEGIVPGGGTVLLDS CDEVQKLVDSLEGDEKTGANIILKALEAPVRQIAENAGVEGSIIVENIRNKEKGIGYDAF TNKYVNMLEEGIVDPTKVTRSALQNAASASAMILTTEAAVANIKEDNPQPPMNPGMGGMM >gi|281296760|gb|ADDO01000069.1| GENE 36 33559 - 34614 997 351 aa, chain + ## HITS:1 COG:VCA0654 KEGG:ns NR:ns ## COG: VCA0654 COG1609 # Protein_GI_number: 15601412 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Vibrio cholerae # 9 325 3 306 330 96 26.0 8e-20 MKSNKKRPTLIDVAKLAGVSTSSASMILNNKKGVSFQEDTKENVFKAAEQLGYKVKTQKD RQTLLEGGRLIIISANFNKLLSLSVAHYICKLASKDNYQVLIFNNCANKEKEEELLEIIR EHRVMGVIYSAYPLNIEVAKAINEQIPTVILNNFDYEDSFDSIDTNDQIAASTIVKSLVE KGHKNIAYVYTTYKYPSLTKLKAIKGAKKEADLHEHVKLSFYKKDVELESDLDPYIIEYQ TGYHLALSILKKEPNIDSFIGSSDFLACGIVDACKELDYINERKIPVASFGNSFLAYLKS YSLTSVDYSIDKLAMSAYNLLTTKIREPLINKGVIRIKYNPQLIEKNKYFD >gi|281296760|gb|ADDO01000069.1| GENE 37 34655 - 35545 1196 296 aa, chain - ## HITS:1 COG:slr0943 KEGG:ns NR:ns ## COG: slr0943 COG3588 # Protein_GI_number: 16330995 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1,6-bisphosphate aldolase # Organism: Synechocystis # 2 294 7 299 300 328 58.0 1e-89 MNRQQFERMKSGKGFIAALDQSGGSTPKALKIYGINEDAYKNDDEMFELVHEMRKRIITN EAFTSQRILAAILFKITMNSKVGELYTADYLWEKKGIVPILKVDEGLDELKDGVQLMKPF KNLNSLLENAKQRHIFGTKMRSVIKELNEESIKKVVKQQFDYAKEISKQGFVPIIEPEVD IHSKDKEKIEEVLKKELITELEKLDKETYVMFKLTLPEKANLYHDLYNYENTLRVVALSG GYSRNEANEKLSKNKDVIASYSRALTEGLNVDQSEEEFTKTLDDSIDKNYKASIAG >gi|281296760|gb|ADDO01000069.1| GENE 38 35705 - 36298 616 197 aa, chain + ## HITS:1 COG:TM1296 KEGG:ns NR:ns ## COG: TM1296 COG3341 # Protein_GI_number: 15644051 # Func_class: R General function prediction only # Function: Predicted double-stranded RNA/RNA-DNA hybrid binding protein # Organism: Thermotoga maritima # 3 196 7 195 223 117 42.0 1e-26 MNYYAVRCGRNPGIYKTWDECNKEVKGFKGAIYKKFSNLEDAKNFIKTDSFSLEDKEDIK VKDDEFIAYVDGSYRNSDKSFSYGVYIFNERESYSFSKRFHDEDSTMRNVCGEIKGAMKA MEVSLEKNKKVLYLHYDYEGIRAWPQGNWKTNKEGTISYKKYFDSIKDRLKVIFIKVKAH SGVEFNELVDKLAKEAK >gi|281296760|gb|ADDO01000069.1| GENE 39 36295 - 36714 580 139 aa, chain + ## HITS:1 COG:SPy1823 KEGG:ns NR:ns ## COG: SPy1823 COG2131 # Protein_GI_number: 15675651 # Func_class: F Nucleotide transport and metabolism # Function: Deoxycytidylate deaminase # Organism: Streptococcus pyogenes M1 GAS # 2 135 4 136 153 167 58.0 5e-42 MRKSWDEYFMEITQLVAQRSTCDRAFVGCVLVNSDHRIVSTGYNGTASGNPHCIDVGHRM RDGHCIATIHAEMNALLYCAKEGIPAKGSICYVTHFPCLNCTKALIQAGISAIYYHEAYR VDDYALEILERNNVSLKKI >gi|281296760|gb|ADDO01000069.1| GENE 40 36723 - 37133 398 136 aa, chain + ## HITS:1 COG:lin2170 KEGG:ns NR:ns ## COG: lin2170 COG1970 # Protein_GI_number: 16801236 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Large-conductance mechanosensitive channel # Organism: Listeria innocua # 1 114 1 111 128 111 55.0 5e-25 MKEFIKEFKAFIARGNVIDMAVGVVIGAAFGAIVTSLVDNIIMPLIGILIGGINFESLSI TVGGAEVKYGMFIQSIVNFLIIAFVIFIVIKQIGKLTSKMKKEEPKVEKEKSCPYCFTQI PIEAIRCPHCTSELSK >gi|281296760|gb|ADDO01000069.1| GENE 41 37138 - 38181 1217 347 aa, chain + ## HITS:1 COG:no KEGG:Thebr_0725 NR:ns ## KEGG: Thebr_0725 # Name: not_defined # Def: patatin # Organism: T.brockii # Pathway: not_defined # 4 344 2 356 400 210 37.0 8e-53 MDKYGLVLEGGGARGAYHVGAYLALCELGFKFQAIVGSSIGAINAAMFVSGDSYDCLRAW RSLDLEYFNKNIEISNKNFKNLDLIEIIKNRLNEITKKITDIGVSPQPLFDLVDKLICED KIRNSQIDFGLCTVNISDFKSEELFCEDMPEGQIKNYIIASCYLPIFKMRSINGKYYLDG GFHSQVPINMVLKKGLTPIVIRLKNLPINDDLSQAKYIISPKHSLGKIMDFDPEKSDNLI RLGYFDTYKEIKNLKGYDYYIKEIPEEDSLKYIYMILKNSLKENENLLMRYIVENLIPKM AKEFNVKNDYDYRDILYLLIEREAKKKHIDRLKIYSVDELVGEIISG >gi|281296760|gb|ADDO01000069.1| GENE 42 38174 - 38788 451 204 aa, chain + ## HITS:1 COG:BH1281 KEGG:ns NR:ns ## COG: BH1281 COG0494 # Protein_GI_number: 15613844 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Bacillus halodurans # 27 200 28 201 207 128 41.0 6e-30 MDRELFTIKEKFRHKKPRAIDVKNAYSVLIPLIKRDNEVHILFEKRALSLKNQPGEISFP GGGIERGEYSRDAAIRETCEELLLNKRDLSIIGKGDFLVNPYSAIIYSYVGILNIEFDAI SPSKEEVESIFTIPLDFFKINKPKSYKTKINLIREDSFPYELIPNGRNYKWKRAEGEMDF YVYKDIVIWGFTAKMLRNFIKNIY >gi|281296760|gb|ADDO01000069.1| GENE 43 39038 - 40042 1218 334 aa, chain + ## HITS:1 COG:CAC2988_2 KEGG:ns NR:ns ## COG: CAC2988_2 COG3584 # Protein_GI_number: 15896240 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 246 332 6 92 93 82 51.0 8e-16 MNKYKRRKSYFKILTIAIFLLSIITMGFSTVLGKDVVININGEVKEVFTYANDVETLLNQ EKIELKDDEEVYPSPSEEITEGMEINIRKIKTYKIKINNRTIVVKAKGASVQEVLNNLGI KVNKLDIVKPSLDTATDTIEDEFQITIYRVKEEVTKNQTEIGFQIISKENKDLAQGEKNI ITPGQNGLQEDTVKSLYINDQLRSQELVSRKVIKEPVTQVEEIGVKNTVTKSPTGDNVIA VYTMKATAYDPSAGSRTASGTRARVGAVAVDPSVIALGSKLYIESTDSWPSYGYAVAEDT GGAIKGNRIDLFFNSNATANKFGRRTVKVYVLGK >gi|281296760|gb|ADDO01000069.1| GENE 44 40207 - 41106 663 299 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282883359|ref|ZP_06291952.1| ## NR: gi|282883359|ref|ZP_06291952.1| hypothetical protein HMPREF0628_0979 [Peptoniphilus lacrimalis 315-B] hypothetical protein HMPREF0628_0979 [Peptoniphilus lacrimalis 315-B] # 1 299 1 299 299 500 100.0 1e-140 MKLIDNEIINRYIYYLCRYIPYDKKELAKDEIMDILQRRLPIAYTDKDIKDELNRLGNPY EIGLKYSNKGNFLLNGKSYEIFISMIYMLFSAGAVSLILFFFNYFARMSKLGFFEILQTI ILTAFMLALIPSWICEKVKSTKILKTFMKAWSIDDLYESSSIKHSIYGIIFVLIYSSMFF ILQLYTKTGNIEKSTYNIIILLFFINVLRDTLRISEDSTVSNIVYVAYIFDLLTISIFAI LLKFAIPNIFPIRVIIFMNIVDILYMTVNLFRDKNIISLRKKRKRENRNRKYKKIDEDK >gi|281296760|gb|ADDO01000069.1| GENE 45 41246 - 43774 1631 842 aa, chain - ## HITS:1 COG:lin1803_2 KEGG:ns NR:ns ## COG: lin1803_2 COG2898 # Protein_GI_number: 16800871 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 243 829 1 585 613 329 32.0 1e-89 MKIIKNILKYIKAIFLIGVVFLVIFELSKLRREFSYDELSNIFTSIGFFKLSFLMVLGFL AFIPMINYDLILNRFANCEKSIKYTIKRSIVINSFNNLIGFGGLINMGLRFRYFAKENDD KKLLKFLAKSFLFDLTGISFLSLITLISLIIYKSTIIINYKYWLIGGILYGPLILIVSLY KNTDEFHISKKYSLDVSLTSIVEWTSAMLFFISIAYVLDLKIKFFPVAAIFVVANLIGLI SFIPGGLGSFDLAIITILSSIGINTNEVFTWLILYRLFYYIVPFIIGILFFISDLGESFD LKNDKIPSKIVKSIGLDLLCLILYILGALMVISISVPDNLSKIRLFKGFNLLNANLIYQF LSLLLGFSFILLGRANRKRVKSAVKATIIYLLIALFYCILSGFSFIEISLIIISLILITF TRKIHFRKQFVYSMENITLDSIVYFAIGTLTVILSVINYGIKIKRTRYFIFIPFEKSFVN IIIITGIVYFATRILMDYLKGNKEKLGEKLNRQTVLEILNKYDCYAESALALVGDKDIYY YENENGEKTCAMSICTYRDRVLVMGDAFGKKEDFKKLIENFVTDADRLCYNPVFYEIKEN QTIYLHDFGYSFIKFGEKAKVKLSDFVMEGPKRKSQRNVIKKFEKNGLSFEIVNPPYQDD FMEELKKISDSWLDGRIEKGFSLGFFNEDYLKLCPMALVKDGEKILAFSNIMPTSGETWA TIDLMRYDRENEQNGIMDFLFINLILYFKDLGKKYFDFGMAPLYNVGINSNSFIEEKLAY LVYKFGYKFYSFDGLRAYKEKFNPEWSSVYLSYTKNTWLLYSVITIFLIDIKAKENYDKN RK >gi|281296760|gb|ADDO01000069.1| GENE 46 43774 - 44490 576 238 aa, chain - ## HITS:1 COG:lin2547 KEGG:ns NR:ns ## COG: lin2547 COG0596 # Protein_GI_number: 16801609 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Listeria innocua # 10 233 7 230 239 124 31.0 2e-28 MEKYVKVSGGSKIYLRILGQGEALILLHGNGENSHYFDKQIRDFAKYFKVIAIDTRGHGK SDPIKEKLTFEDLSRDLLDILNFLKIEKANILGFSDGANIALVFVKNYPSRIKKLILNSP NKNVDQIKLLPRIFSFIFYYLLKIVSNLCKRFRNYFSVYSLIFDTIKIKDSDFKKIDFPV LIIAGAKDLIYIDTFYKIAKKIKKSKLSIIKGHGHKVAHTNPKEYNKIILDFLRRKAD Prediction of potential genes in microbial genomes Time: Mon Jul 18 13:05:35 2011 Seq name: gi|281296751|gb|ADDO01000070.1| Peptoniphilus lacrimalis 315-B contig00043, whole genome shotgun sequence Length of sequence - 8407 bp Number of predicted genes - 9, with homology - 8 Number of transcription units - 3, operones - 2 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 22 - 1119 815 ## PROTEIN SUPPORTED gi|163764768|ref|ZP_02171822.1| ribosomal protein S5 2 1 Op 2 . - CDS 1143 - 1625 668 ## COG1329 Transcriptional regulators, similar to M. xanthus CarD - Prom 1678 - 1737 9.7 - Term 1750 - 1787 5.7 3 2 Op 1 . - CDS 1796 - 2590 565 ## COG0388 Predicted amidohydrolase 4 2 Op 2 . - CDS 2600 - 3463 730 ## COG1968 Uncharacterized bacitracin resistance protein 5 2 Op 3 16/0.000 - CDS 3535 - 4896 1356 ## COG0305 Replicative DNA helicase 6 2 Op 4 9/0.000 - CDS 4899 - 5345 404 ## PROTEIN SUPPORTED gi|169823786|ref|YP_001691397.1| 50S ribosomal protein L9 7 2 Op 5 . - CDS 5317 - 7344 666 ## PROTEIN SUPPORTED gi|162447066|ref|YP_001620198.1| bipartite protein: signaling protein and ribosomal protein L9 8 2 Op 6 . - CDS 7346 - 8110 508 ## gi|282883397|ref|ZP_06291989.1| putative membrane protein - Prom 8130 - 8189 8.0 + Prom 7838 - 7897 6.7 9 3 Tu 1 . + CDS 8133 - 8243 114 ## Predicted protein(s) >gi|281296751|gb|ADDO01000070.1| GENE 1 22 - 1119 815 365 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764768|ref|ZP_02171822.1| ribosomal protein S5 [Bacillus selenitireducens MLS10] # 1 363 27 390 397 318 47 9e-87 RSIVAKIFRILFTLIGAGAGYFLVSIITQIDLVKSIGNDNVIFVISLVIVILFALIFFIF SSKVFNSLIELLTIWEKELKQRSLTEIIFAVLGIIVGFILAFLISQPIYKIPIPYVGSAI SIILYGIFGYLGLKIGLSNKDVLNFKIKDFVVSNKKPPKDKTKYKNFEGIPKVLDTSVII DGRILDIIKSGFVEGTIVIPVFVLEELQHIADSFDSLKRKRGRRGLDVVKEIQNLNDVNL VIEQEPYEDISEVDSKLLKLTGDLNGKIVTNDYNLNKVALVQKIPVLNINELANAVKPVY LPGEEMQIQIVKAGREFNQGLGYLDDGTMIVVENGKHLIGKTIDVTVTSALQTAAGKMIF AKPNE >gi|281296751|gb|ADDO01000070.1| GENE 2 1143 - 1625 668 160 aa, chain - ## HITS:1 COG:MT3689 KEGG:ns NR:ns ## COG: MT3689 COG1329 # Protein_GI_number: 15843196 # Func_class: K Transcription # Function: Transcriptional regulators, similar to M. xanthus CarD # Organism: Mycobacterium tuberculosis CDC1551 # 1 158 2 158 162 117 38.0 8e-27 MFKIGDKVVYPMHGAGTIVAIEDREILGKKHEYYVLLLPINKLKVMIPVKKADEVGVRKI MEISEMEEVLEILSSEEKFKMPTNWNRRYRFNLDKIKSGNLIEIAGVIKSLEKLDSKKSL STGERKILNEARIIIISEMALVFDKDVDEVVSMVDEAIFG >gi|281296751|gb|ADDO01000070.1| GENE 3 1796 - 2590 565 264 aa, chain - ## HITS:1 COG:MTH1811 KEGG:ns NR:ns ## COG: MTH1811 COG0388 # Protein_GI_number: 15679799 # Func_class: R General function prediction only # Function: Predicted amidohydrolase # Organism: Methanothermobacter thermautotrophicus # 5 259 2 261 272 186 36.0 3e-47 MKNFKVGMIQIASKGDKDYNLKRMEELVDIACQKGADVVALPEMWNCPYQNSYFTKFKEQ EGEESYELMKKLAKRYGIYLVGGSIPISDGDKIYNKSFVFNACGKEIFSYSKINLFDIEG FKESDTITGGKSLGVFQTEFANAGLLICYDSRFPELFQSLVNFGAEVIFMPSTFMIKTGK RFWELCNRARAMDTQCFLISPSIARDNELSKNAWAHSMITSPYGEVLLDMGEDEGVEVFS IEADLVKEARKNFPYKKSRENRSL >gi|281296751|gb|ADDO01000070.1| GENE 4 2600 - 3463 730 287 aa, chain - ## HITS:1 COG:FN1702 KEGG:ns NR:ns ## COG: FN1702 COG1968 # Protein_GI_number: 19705023 # Func_class: V Defense mechanisms # Function: Uncharacterized bacitracin resistance protein # Organism: Fusobacterium nucleatum # 8 274 2 254 266 199 50.0 4e-51 MIFDLFKVLILGIVEGLTEFLPISSTGHLILFGKFIELSPKEFSNAFFVIIQLGAILSVL YLYFNDLNPIGKYKIQEKVGDKYKSLSLKDKWELRDMPTMRLLAKIIIGFLPAAVLGFLF DDLIDKYLFNEVTVAIALIFYGIIIILMEKKNKDSNFKYNDLDDISLKTAFFIGVFQCLA MVPGTSRSAATIIGAMLLGCSRTSAAKFSFYLAIPTMLGATALKVIKIGISFSLWQWFLI IVGGIVSYILALIVIKKFLSYIRNNDFTYFGIYRIILGILVLFIRFI >gi|281296751|gb|ADDO01000070.1| GENE 5 3535 - 4896 1356 453 aa, chain - ## HITS:1 COG:BS_dnaC KEGG:ns NR:ns ## COG: BS_dnaC COG0305 # Protein_GI_number: 16081096 # Func_class: L Replication, recombination and repair # Function: Replicative DNA helicase # Organism: Bacillus subtilis # 10 450 3 443 454 417 51.0 1e-116 MEDMELNNLDMENLRIPPHNNDAETSALGAMLLSKEAITLSIEIISVEDFYSPAHQKIYS SILSIYNRNEACDVVTLSEELLRTDSLEEVGGSVYLADISSSVAAVSNSRYYLNIIKEKS ILRKLIDSSSKVITKAYSPEAAASSLIELAEKSIFEINEDSNRHGLVNIRDIVLDSFSQM EQRAQNPGGLTGLSTGFVDLDRKLSGLQKSDLVLIAARPSMGKTALMVNIATNAALKNDA RVAIFSLEMSKNQLVQRVISSNAHVDLQKVISGDINEDEWTKIINAMPIISDLKIEIDDT AAISPLELKAKCRRMKVEKGLDLIVIDYLQLMQMSGRVESRQQEISTISRNLKAIAKELD VPVIALSQLSRAPELRSDHRPILSDLRESGAIEQDADVVMFLYRDEYYNKEESEKPNIGE LIIAKHRNGPTGTVELVFKKEYTKFLNLERGGE >gi|281296751|gb|ADDO01000070.1| GENE 6 4899 - 5345 404 148 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169823786|ref|YP_001691397.1| 50S ribosomal protein L9 [Finegoldia magna ATCC 29328] # 1 148 1 148 148 160 51 4e-39 MKIILIKDHKDLGKSGDLINAKDGYARNFLIPMKIAIEATKENLAKWQEEKRIEEENEKE NRKKALELKKKLESKKILITAKAGDGGKLFGAITSKDIADQIKKQYNVQIDKKKIDLAEN IKSIGLKNIEIKLYPKIVANIKVEVDGE >gi|281296751|gb|ADDO01000070.1| GENE 7 5317 - 7344 666 675 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|162447066|ref|YP_001620198.1| bipartite protein: signaling protein and ribosomal protein L9 [Acholeplasma laidlawii PG-8A] # 1 651 28 653 818 261 25 2e-92 MKNDFSMKDFAAYMIFGLIAIVVAGLYKIQAGLGLFLIFIYIIIITYKSIEKKNEDNKKY VENLDEDFDSLTKTAIFNMPHPLVVTDEKGIIIWYNTHFLNLFEDMELMNENIDDFIKDV DFKNILKDDDKKSFDVNIAMDYYRAYVNICDTSKSKGGRDKVILFYFVNNSAYFELKKKY TNEYPIVVKLEVDNYDEAMDSTPSANKPQLIAAIDSTIRSYFEQYDALFRKYNEDSYLVI LDYKSFLDIREKRFDILDDLRELNRENSMPITLSIGTSSIGLNFKAANVEADSCLDIALG RGGDQAVIKVSDNYEFFGGKSKAVEKRNKVKARVIGEALRQLIDRSENVYVMGHINADMD AIGAAIGVLRATLNRNKDGFIVLEQSNPSIDNLLKRMQKEEPETYRKIVSRDEALSSIKN SSLLILVDNHKPSFTECPELLNGTTQVVVIDHHRRGGEFVKNPVLTYVEPYASSTCELIT EMLEYMSDDLNLTHFEADALMSGIVVDTKNFSFQTGVRTFEAASTLRRAGADMTKVKALF EDDFSTMIYRAEVIQSAKIIGGNIAVAKFEKELANSVLVAAQSADALLEINGIDASFVMT LSKDKIHISGRSRGEVVSVQLILEKIGGGGHLNMAGAQLDTKDFEVAEKKLTDAINEYME ENKENKDENNSNKRP >gi|281296751|gb|ADDO01000070.1| GENE 8 7346 - 8110 508 254 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282883397|ref|ZP_06291989.1| ## NR: gi|282883397|ref|ZP_06291989.1| putative membrane protein [Peptoniphilus lacrimalis 315-B] putative membrane protein [Peptoniphilus lacrimalis 315-B] # 1 254 61 314 314 362 100.0 2e-98 MGIFIGVCVLLGAIFNPIDGFVVFTIFGPLILVFHYMITSRRSRTHIFIAGAISFFASVI VLMVSFGINSEVLNSKKTLEGLINIYTNIGSEVGLADTEIFDITSRVSNLYYTFLQMAPS FLIISSLVFSYIVYISVVRTMFAKGRIIIGPPSLEFIKIPKEVIFLGFATIGVLYLLKFP QGTEIIYKNLLFILLFLLFVEGLAIIKFFMTSMKVSRFLQTIIIIVSLTFPFLQMLFIFL GAVDLFIDFRKIGV >gi|281296751|gb|ADDO01000070.1| GENE 9 8133 - 8243 114 36 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MDSTIYIEGKKIYKKGNTTPHKAKRIDLIANMSKSP Prediction of potential genes in microbial genomes Time: Mon Jul 18 13:05:53 2011 Seq name: gi|281296748|gb|ADDO01000071.1| Peptoniphilus lacrimalis 315-B contig00005, whole genome shotgun sequence Length of sequence - 1440 bp Number of predicted genes - 3, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 123 - 156 3.1 1 1 Op 1 2/0.000 - CDS 180 - 827 322 ## COG3464 Transposase and inactivated derivatives 2 1 Op 2 . - CDS 743 - 1270 235 ## COG3464 Transposase and inactivated derivatives 3 1 Op 3 . - CDS 1162 - 1374 64 ## Predicted protein(s) >gi|281296748|gb|ADDO01000071.1| GENE 1 180 - 827 322 215 aa, chain - ## HITS:1 COG:BH3137 KEGG:ns NR:ns ## COG: BH3137 COG3464 # Protein_GI_number: 15615699 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Bacillus halodurans # 1 212 180 393 405 119 36.0 4e-27 MPTRDKNFLFSYFERISNKEKQGVKFFVSDMSNTFKSVKNRFFKTSIHIIDRYHFIRQVS WALENVRKRIQKDISSKLRKYFKRSRSLLTKPASKLTSQQAEDVSLMLSFCDDLKFAYRL KELFYQYVLTQPNRVRAAKSLREWIRRAEESNLKEFKSCITAFKNWFDEICNSFDYSWSN GPLEGTHTKIKTLKRNCFGMKNFNLFRKRIMFACK >gi|281296748|gb|ADDO01000071.1| GENE 2 743 - 1270 235 175 aa, chain - ## HITS:1 COG:FN0599 KEGG:ns NR:ns ## COG: FN0599 COG3464 # Protein_GI_number: 19703934 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Fusobacterium nucleatum # 3 120 52 173 428 75 36.0 6e-14 MDTCPHCGSKRIWVHDHRVQKIKDTHIRGKKCLIHLKKTRYDCKFCGCRFERDLDFIAKG HTMTNRLVFAIVYEFDELYSISSIANRYNVSSNTVLRILNCLSVSRDRLSEVLCIDTHRA QVSSKETVEILSIRLLFLMVLNTLSLIFCLLGIKTFYLATLKEFLTRRNKVLSFL >gi|281296748|gb|ADDO01000071.1| GENE 3 1162 - 1374 64 70 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MQNNNNMNLLGFKDVFLIAFMRIMTLFMSMLLLKRWILALTVVLKEFGFMIIESKRLRIL ISVARNALFI