Prediction of potential genes in microbial genomes Time: Fri May 27 07:08:57 2011 Seq name: gi|289656189|gb|ADCS01000001.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.1, whole genome shotgun sequence Length of sequence - 7778 bp Number of predicted genes - 10, with homology - 8 Number of transcription units - 6, operones - 3 average op.length - 2.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 141 395 ## - 5S_RRNA 69 - 135 97.0 # AE015927 [R:2797299..2798807] # 5S ribosomal RNA # Clostridium tetani E88 # Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium. 2 2 Op 1 1/0.000 - CDS 354 - 890 554 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 3 2 Op 2 . - CDS 887 - 1900 1379 ## COG1609 Transcriptional regulators 4 2 Op 3 . - CDS 1915 - 2808 1013 ## COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase - Prom 2836 - 2895 8.6 - Term 2860 - 2913 13.1 5 3 Op 1 . - CDS 2916 - 3410 472 ## gi|299143161|ref|ZP_07036241.1| conserved hypothetical protein 6 3 Op 2 . - CDS 3426 - 3908 774 ## gi|299143162|ref|ZP_07036242.1| putative general stress protein - Prom 4056 - 4115 9.4 - Term 4097 - 4144 -0.7 7 4 Tu 1 . - CDS 4199 - 4342 170 ## 8 5 Op 1 . - CDS 4403 - 5938 1860 ## Apar_0178 protein tyrosine/serine phosphatase 9 5 Op 2 . - CDS 5989 - 6867 847 ## COG0564 Pseudouridylate synthases, 23S RNA-specific - Prom 6894 - 6953 5.4 + Prom 6842 - 6901 8.2 10 6 Tu 1 . + CDS 6937 - 7740 764 ## COG0061 Predicted sugar kinase Predicted protein(s) >gi|289656189|gb|ADCS01000001.1| GENE 1 1 - 141 395 46 aa, chain + ## HITS:0 COG:no KEGG:no NR:no THVLLTRPPLIQGFFVPKNSKSFSSLDLHVLGAPPAFVLSQDQTLN >gi|289656189|gb|ADCS01000001.1| GENE 2 354 - 890 554 178 aa, chain - ## HITS:1 COG:SMb21520 KEGG:ns NR:ns ## COG: SMb21520 COG2197 # Protein_GI_number: 16265098 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Sinorhizobium meliloti # 54 165 83 203 219 65 33.0 7e-11 MITIYLSIKEEIFRIGIERALEEKYNIKYYNSKENTDKSSVIISDEEIKREKTITIFENK NIAAYSKSENKLLKNVSVKELQKSVEEILKGNTYVQYEIEKLSEQLKNFEKQYANLTIRD REIIREILSGHTNKQIAKSMYLSEKTIKNNITELYKKLEINNRTELIKKCKICIDIEK >gi|289656189|gb|ADCS01000001.1| GENE 3 887 - 1900 1379 337 aa, chain - ## HITS:1 COG:BS_ccpA KEGG:ns NR:ns ## COG: BS_ccpA COG1609 # Protein_GI_number: 16080026 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 4 334 5 334 334 207 38.0 3e-53 MASTIKDVAKMADVSISTVSRVINDSKPVSPEAKRRVLHAIEVLDYRPNEVARSLVTKKS NIIGVIVDDIGSAYASKVLRGVEEVGRMYNYDILLSSSYGDPEIELKFAKLFAQKQVEGI ILISAVLNQKLMYKLEESRIPYININRFYDIEENLTVRIDYEKASYDMTKYLIEQGHENI AAVVIQKDIDRTEEKYKLNGYKKAMKEEKLQDNIVYTMGIKENDIEEIFEKIDETINSGI TALFCSQDEIAIHIINHLVDKGLKVPQDVSVTGFGGTDLMDIYRPRLTTAKISYYDIGAV AIRRILKRIENKEVIDEERISLPVQILKRDSVKSLKK >gi|289656189|gb|ADCS01000001.1| GENE 4 1915 - 2808 1013 297 aa, chain - ## HITS:1 COG:BH0676 KEGG:ns NR:ns ## COG: BH0676 COG1597 # Protein_GI_number: 15613239 # Func_class: I Lipid transport and metabolism; R General function prediction only # Function: Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase # Organism: Bacillus halodurans # 1 285 1 281 295 198 36.0 1e-50 MEKIKIIVNPKSGREQSIAKLSVLIGLISKDGYKIDLRFTTKRGDALRFASEDEGEDLII SVGGDGTLNEVVNGMYFANRKTPLAVLQCGTVNDFATVLNIPSNIKDFYNMIKIGKVMPV DLGMAGDRVFVNVAAGGFLTDIAYQVSEDKKTILGRMAYYLEGIKEVSKIGIINDIEFKK IKFESQEYKREEETLMFIIANSGHIGGFKNLAPDAEVYDGYLDVLIIKAINITDLPTLLT SILSGSHVSHEKVEYLKTKEIKISTKEKIVIDVDGEKAGKLPMTFRVLEKALNLVVN >gi|289656189|gb|ADCS01000001.1| GENE 5 2916 - 3410 472 164 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|299143161|ref|ZP_07036241.1| ## NR: gi|299143161|ref|ZP_07036241.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 164 1 164 164 221 100.0 1e-56 MQATITLHDLLKIILYLAGTGVLIYLALVLKNLLEILKRVNETIEENQNIIDDTIKKVPA LTDNAVEITNNLGTISSETSEIMVSAKPEIEKLISSVGSITNTVSDISRSVDTTALKLTN TVSNVSDTISDTAKTISVNANNVIDYFYILKEIVESLKEVFLSK >gi|289656189|gb|ADCS01000001.1| GENE 6 3426 - 3908 774 160 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|299143162|ref|ZP_07036242.1| ## NR: gi|299143162|ref|ZP_07036242.1| putative general stress protein [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 160 1 160 160 174 100.0 2e-42 MGLFDYLEKRKREAARKRKVEDAGKIVAGASLGAFMGILFAPKSGKETREDIKNKAQDVA ESAISATKDASESIQFKAYQASEQVKKTYADLKEKAADVKVDLEGSIEVAKAKAKAIGEV VRENASDIKEEIKETKETIDKSVEDVKEKIEETSDESKED >gi|289656189|gb|ADCS01000001.1| GENE 7 4199 - 4342 170 47 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MYDRFSFNSTDKKDPGNFLLQNITSHLGVEVRKWDEVTHLLMGAGLN >gi|289656189|gb|ADCS01000001.1| GENE 8 4403 - 5938 1860 511 aa, chain - ## HITS:1 COG:no KEGG:Apar_0178 NR:ns ## KEGG: Apar_0178 # Name: not_defined # Def: protein tyrosine/serine phosphatase # Organism: A.parvulum # Pathway: not_defined # 129 447 23 337 395 174 34.0 6e-42 MKNFKRKLGLAALSGVMMLSIVKPAYAVWYDDAINFIKGEKIELSDEITKAEAVEKLYKV LNLDVKDELKDKANDAISREELAGYIVKALVEKNIILNDDDEIIKNISDYSTVADSYKKD FAKLYNLNILVGDGVKLAPKENLTKNQFAQVLKNISELKYLEGKVTEIAKYGNLTISVKQ DDVKNAKIEAGDILTIVAGDKQITAPFGDTYSNVDNKKEIVIPEKNGNIIVAINMGNFAK TYGIKLDDTVKLMLQGKKLYLEEYKIRSIDKNRTNNRDDYASDEVFANFREVKTGLIAPG VLYRTSSPINPGLKRASFADTLIKKVNVKTVLNFADSEDEIKKYIADKEFNSPYYKGLFE SGKVIALNMGVDFMADEFGTKLKDGLEFFAKGEAPYAIHCTEGKDRAGFVSILLEMLGGA TVEEIKEDYMISYMNFFHVEKGSDQYKKIAESNVLKTLMTITKTTNMEELNKADLKSCAE NYLREKIKLEDVTIKAIEGILTTGKEVKKAA >gi|289656189|gb|ADCS01000001.1| GENE 9 5989 - 6867 847 292 aa, chain - ## HITS:1 COG:CAC1266 KEGG:ns NR:ns ## COG: CAC1266 COG0564 # Protein_GI_number: 15894548 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthases, 23S RNA-specific # Organism: Clostridium acetobutylicum # 18 291 16 293 299 204 43.0 1e-52 MNYFNSYEGLSFKILDGNIKIRDFLVQNGLSSRFIRGSIEEENIYLNGEKIYRNELLREN DELFVKFSDESLNAKVQHGKLDIIYEDDDIVVVNKPPYMVTHTAKDDVENTLLNFVAGYF EDNKIRRKVRIVNRLDRDTSGIVIVAKNSFSHSSIQEQFGDSVKKEYVAIVNGIIKNDSG IIEKPIDIAKDGIRRIVSPDGKYSKTSYEVIKRNDFFTLVKLRLYTGRTHQIRVHMSHMG TPILGDALYGSTSNLILRQALHCYEMEIIHPRTKKLLKFIAPVPKDMENIVR >gi|289656189|gb|ADCS01000001.1| GENE 10 6937 - 7740 764 267 aa, chain + ## HITS:1 COG:SP1098 KEGG:ns NR:ns ## COG: SP1098 COG0061 # Protein_GI_number: 15900966 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted sugar kinase # Organism: Streptococcus pneumoniae TIGR4 # 4 267 6 267 272 139 32.0 5e-33 MKEKIINIISNSNFESRKTSSILTDILKERGFFPTTFFNENAELTICVGGDGAFLKAAHK NNFSQIPFVGINTGHLGFYQEVSPENINEFVDSYINKNYSIEELKLIGAEVFTKNKNYIL TALNEIVLKAQHSKMIHINVFINRNHVEKFSGDGMLVASPYGSTAYNYSCKGSIIHPSLD ILQVTPIAPANSNAYRALSSSIIVPGSFVVSLVPEKRYMNSNLILIDGNEYFFSNLKKIN LRLSNKSIKRLVFSEDTYWDNLKTKFL Prediction of potential genes in microbial genomes Time: Fri May 27 07:11:08 2011 Seq name: gi|289656188|gb|ADCS01000002.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.2, whole genome shotgun sequence Length of sequence - 28923 bp Number of predicted genes - 44, with homology - 43 Number of transcription units - 8, operones - 5 average op.length - 8.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 50/0.000 - CDS 23 - 364 424 ## PROTEIN SUPPORTED gi|126697670|ref|YP_001086567.1| 50S ribosomal protein L17 2 1 Op 2 32/0.000 - CDS 378 - 1325 1271 ## COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD subunit 3 1 Op 3 48/0.000 - CDS 1367 - 1762 565 ## PROTEIN SUPPORTED gi|126697667|ref|YP_001086564.1| 30S ribosomal protein S11 4 1 Op 4 . - CDS 1776 - 2138 472 ## PROTEIN SUPPORTED gi|167036826|ref|YP_001664404.1| 30S ribosomal protein S13 5 1 Op 5 . - CDS 2153 - 2266 190 ## PROTEIN SUPPORTED gi|227901812|ref|ZP_04019617.1| ribosomal protein L36 6 1 Op 6 . - CDS 2296 - 2514 269 ## PROTEIN SUPPORTED gi|15900168|ref|NP_344772.1| translation initiation factor IF-1 7 1 Op 7 . - CDS 2535 - 2789 207 ## PROTEIN SUPPORTED gi|169823874|ref|YP_001691485.1| putative 50S ribosomal protein L14e 8 1 Op 8 28/0.000 - CDS 2792 - 3436 932 ## COG0563 Adenylate kinase and related kinases 9 1 Op 9 53/0.000 - CDS 3448 - 4728 859 ## PROTEIN SUPPORTED gi|163796899|ref|ZP_02190856.1| 30S ribosomal protein S11 10 1 Op 10 . - CDS 4728 - 5177 569 ## PROTEIN SUPPORTED gi|168187795|ref|ZP_02622430.1| ribosomal protein L15 11 1 Op 11 . - CDS 5191 - 5358 190 ## PROTEIN SUPPORTED gi|153952879|ref|YP_001393644.1| 50S ribosomal protein L30 12 1 Op 12 56/0.000 - CDS 5372 - 5878 578 ## PROTEIN SUPPORTED gi|146297268|ref|YP_001181039.1| ribosomal protein S5 13 1 Op 13 46/0.000 - CDS 5894 - 6256 425 ## PROTEIN SUPPORTED gi|143423|gb|AAA22702.1| ribosomal protein L18 14 1 Op 14 55/0.000 - CDS 6274 - 6810 630 ## PROTEIN SUPPORTED gi|78042739|ref|YP_361103.1| ribosomal protein L6 15 1 Op 15 50/0.000 - CDS 6825 - 7220 518 ## PROTEIN SUPPORTED gi|158319557|ref|YP_001512064.1| ribosomal protein S8 16 1 Op 16 50/0.000 - CDS 7251 - 7436 293 ## PROTEIN SUPPORTED gi|169823865|ref|YP_001691476.1| 30S ribosomal protein S14 17 1 Op 17 48/0.000 - CDS 7452 - 7994 716 ## PROTEIN SUPPORTED gi|169823864|ref|YP_001691475.1| 50S ribosomal protein L5 18 1 Op 18 57/0.000 - CDS 8006 - 8314 331 ## PROTEIN SUPPORTED gi|227901825|ref|ZP_04019630.1| ribosomal protein L24 19 1 Op 19 50/0.000 - CDS 8330 - 8698 504 ## PROTEIN SUPPORTED gi|169823862|ref|YP_001691473.1| 50S ribosomal protein L14 20 1 Op 20 50/0.000 - CDS 8719 - 8973 335 ## PROTEIN SUPPORTED gi|150392151|ref|YP_001322200.1| ribosomal protein S17 21 1 Op 21 50/0.000 - CDS 8978 - 9184 232 ## PROTEIN SUPPORTED gi|169823860|ref|YP_001691471.1| 50S ribosomal protein L29 22 1 Op 22 50/0.000 - CDS 9174 - 9605 602 ## PROTEIN SUPPORTED gi|169823859|ref|YP_001691470.1| 50S ribosomal protein L16 23 1 Op 23 61/0.000 - CDS 9632 - 10393 887 ## PROTEIN SUPPORTED gi|169823858|ref|YP_001691469.1| 30S ribosomal protein S3 24 1 Op 24 59/0.000 - CDS 10406 - 10741 444 ## PROTEIN SUPPORTED gi|227901831|ref|ZP_04019636.1| ribosomal protein L22 25 1 Op 25 60/0.000 - CDS 10758 - 11045 408 ## PROTEIN SUPPORTED gi|134298097|ref|YP_001111593.1| ribosomal protein S19 26 1 Op 26 61/0.000 - CDS 11060 - 11890 1102 ## PROTEIN SUPPORTED gi|227901833|ref|ZP_04019638.1| ribosomal protein L2 27 1 Op 27 61/0.000 - CDS 11907 - 12197 309 ## PROTEIN SUPPORTED gi|188584838|ref|YP_001916383.1| LSU ribosomal protein L23P 28 1 Op 28 58/0.000 - CDS 12197 - 12820 719 ## PROTEIN SUPPORTED gi|169823853|ref|YP_001691464.1| 50S ribosomal protein L4 29 1 Op 29 40/0.000 - CDS 12838 - 13470 685 ## PROTEIN SUPPORTED gi|158319543|ref|YP_001512050.1| ribosomal protein L3 30 1 Op 30 . - CDS 13531 - 13848 389 ## PROTEIN SUPPORTED gi|167755911|ref|ZP_02428038.1| hypothetical protein CLORAM_01431 - Term 14157 - 14191 3.0 31 2 Tu 1 . - CDS 14219 - 14596 408 ## gi|299143196|ref|ZP_07036276.1| inheritance of peroxisomes protein 2 - Prom 14682 - 14741 7.7 - Term 14613 - 14670 5.1 32 3 Op 1 35/0.000 - CDS 14751 - 16472 216 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 33 3 Op 2 3/0.000 - CDS 16465 - 18207 239 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 34 3 Op 3 . - CDS 18209 - 19162 746 ## COG2207 AraC-type DNA-binding domain-containing proteins - Prom 19322 - 19381 14.2 - Term 19260 - 19295 -0.7 35 4 Op 1 . - CDS 19464 - 20204 858 ## gi|299143200|ref|ZP_07036280.1| putative secreted protein 36 4 Op 2 5/0.000 - CDS 20204 - 20848 562 ## COG4709 Predicted membrane protein 37 4 Op 3 . - CDS 20845 - 21159 319 ## COG1695 Predicted transcriptional regulators - Prom 21249 - 21308 9.8 + Prom 21262 - 21321 11.5 38 5 Op 1 . + CDS 21405 - 22460 1653 ## COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases + Term 22467 - 22500 4.7 39 5 Op 2 . + CDS 22502 - 23488 1103 ## COG0523 Putative GTPases (G3E family) - Term 23468 - 23502 3.9 40 6 Op 1 1/0.000 - CDS 23512 - 24192 754 ## COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases 41 6 Op 2 11/0.000 - CDS 24194 - 24940 907 ## COG1180 Pyruvate-formate lyase-activating enzyme 42 6 Op 3 . - CDS 24965 - 27208 2773 ## COG1882 Pyruvate-formate lyase - Prom 27445 - 27504 6.8 + Prom 27430 - 27489 12.3 43 7 Tu 1 . + CDS 27524 - 28858 199 ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 44 8 Tu 1 . - CDS 28809 - 28913 61 ## Predicted protein(s) >gi|289656188|gb|ADCS01000002.1| GENE 1 23 - 364 424 113 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|126697670|ref|YP_001086567.1| 50S ribosomal protein L17 [Clostridium difficile 630] # 1 113 1 113 113 167 75 5e-41 MAKLRKLGRPTAHRKAMLRNLVTSLLREEKIVTTVTRAKETKRMAEKMITLGKRGDLHAR RQALSYIYDEDVVTKLFAEIAPKYAERNGGYTRILKLGNRRGDGAEEARIELV >gi|289656188|gb|ADCS01000002.1| GENE 2 378 - 1325 1271 315 aa, chain - ## HITS:1 COG:BH0162 KEGG:ns NR:ns ## COG: BH0162 COG0202 # Protein_GI_number: 15612725 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, alpha subunit/40 kD subunit # Organism: Bacillus halodurans # 1 314 1 314 314 363 64.0 1e-100 MIEIEKPSIEKLELDESGVYGKFVVEPLESGYGITIGNSLRRVLLSSLPGAAISFINIRG VEHEFATIPGVLEDVPQIILNIKGIVLKTNEDEPVKVIIEKKGEGEILASDIQTGGDVEI INLDHHIATLNEDADVYIELTIERGRGYEPSELKKDEITEIGVIPIDSNYTPIKKVNWKV ENTRVGNRTDYDRLILEVTTDGSMKADEATSLAAKILTEHLNLFIGLTEHVNNVNIMVEK EEDQKEKVLEMTVEELDLSVRSFNCLKRANINTVEELTQKSEDDMMKVRNLGKKSLEEVE NKLAELGLGLRREDE >gi|289656188|gb|ADCS01000002.1| GENE 3 1367 - 1762 565 131 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|126697667|ref|YP_001086564.1| 30S ribosomal protein S11 [Clostridium difficile 630] # 1 131 1 132 132 222 83 2e-57 MAKKQKVTRVRRRERKNIEKGQAHIASTFNNTMVTLTDMSGNVISWASAGQLGFRGSRKS TPFAAQEAAESAASKAKEHGLKSVEVFVKGPGSGREAAIRSLQASGLEVTMIKDETPIPH NGCRPPKRRRV >gi|289656188|gb|ADCS01000002.1| GENE 4 1776 - 2138 472 120 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|167036826|ref|YP_001664404.1| 30S ribosomal protein S13 [Thermoanaerobacter pseudethanolicus ATCC 33223] # 1 120 1 121 122 186 75 1e-46 MARIAGIDLPREKRVEIGLTYIYGIGRKRSQEILTNADVNFDTRVKDLTESELARIRDEI DKYHVEGDLRRDIAMNIKRLKEINCYRGMRHKKGLPVRGQKTKTNARTRKGPKKLVSKKK >gi|289656188|gb|ADCS01000002.1| GENE 5 2153 - 2266 190 37 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227901812|ref|ZP_04019617.1| ribosomal protein L36 [Finegoldia magna ATCC 53516] # 1 37 1 37 37 77 91 7e-14 MKVRPSVKKMCEKCKIIKRNGRIMVICENPKHKQRQG >gi|289656188|gb|ADCS01000002.1| GENE 6 2296 - 2514 269 72 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15900168|ref|NP_344772.1| translation initiation factor IF-1 [Streptococcus pneumoniae TIGR4] # 1 72 1 72 72 108 72 5e-23 MGKEDVIEVEGTVVDALPNTNFKVKLENGHVILAHISGKLRMNYIRILPGDKVTVELSPY DLSRGRITWRKK >gi|289656188|gb|ADCS01000002.1| GENE 7 2535 - 2789 207 84 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169823874|ref|YP_001691485.1| putative 50S ribosomal protein L14e [Finegoldia magna ATCC 29328] # 7 82 7 80 94 84 57 8e-16 MDKTFFIEVGQVVKSKSGRDAGLIFLVYEILDDSYVYIVNGSNRKLNNPKKKKIKHLIKY NGKVDLQVENFNDSYIRKALKNYN >gi|289656188|gb|ADCS01000002.1| GENE 8 2792 - 3436 932 214 aa, chain - ## HITS:1 COG:BH0155 KEGG:ns NR:ns ## COG: BH0155 COG0563 # Protein_GI_number: 15612718 # Func_class: F Nucleotide transport and metabolism # Function: Adenylate kinase and related kinases # Organism: Bacillus halodurans # 1 213 1 213 217 254 61.0 1e-67 MKLVILGPPGAGKGTQADFIIKKYNIPHISTGDIFRENIKNGTELGKKAKSYMDKGLLVP DEVVIEIVQDRICKDDCKDGFLLDGFPRTVAQAVSLDAELDKLGTKLDRVVNIDVDTNIL VDRAVGRRVCKTCGATYHIEYNPPKIEGICDKDQTPLIQRDDDVKETVETRIKVYFDQTS PLIDYYHAQGLLLNIDGTKDIKEVFESIVEGLEK >gi|289656188|gb|ADCS01000002.1| GENE 9 3448 - 4728 859 426 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163796899|ref|ZP_02190856.1| 30S ribosomal protein S11 [alpha proteobacterium BAL199] # 10 426 19 439 447 335 41 2e-91 MISTFKNAWKIPQLRKKMLFTLLMLLIYRLGSHITVPYMNAQEVQKLFSGANQSVFSLLD LMAGGNFRNYTIFAANIYPYITASIVLQLLTIAIPSLEALAKEGETGRKKIAKYTRYLAI AMTFVQAIGYSFGFFRQAVLADNFFEKTVVVLSIVAGTALLIWIGEQITEHGIGNGISLL IFAGIVSRFPTDIIKSVMMVKAGLASPIALVIFLILAILIVVFVVVFNEGERRIPVQYAK RVVGRKMYGGQSTHIPVKVLMSGVMPIIFANSLVAIPATIALFVKSEPTRKAIMKYFTTE GTVGAVLYILFTVLLIVFFTYFYTSIQFNTVEYSKSLQTNGGFIPGIRPGKPTSDYLQRT VNRLVLPGAIALSILAVLPIVLTKLSSLQFNYGGTSMIIVVGVVLETTRVLEQQLLMRHY KGFLKK >gi|289656188|gb|ADCS01000002.1| GENE 10 4728 - 5177 569 149 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|168187795|ref|ZP_02622430.1| ribosomal protein L15 [Clostridium botulinum C str. Eklund] # 1 149 1 146 146 223 74 8e-58 MKLHDLRPAEGGGVKAKKRLGRGIGSGTGKTSGKGHKGQNARSGGGVRPGFEGGQMPLFR RLPKRGFTNVFAKEYAEINISALNVFENGTEVTPETLISRGIIKSAKAKDGVRILGNGEL NVKLTVKAQHFSKTAAEKIEAAGGKAEVI >gi|289656188|gb|ADCS01000002.1| GENE 11 5191 - 5358 190 55 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|153952879|ref|YP_001393644.1| 50S ribosomal protein L30 [Clostridium kluyveri DSM 555] # 1 55 4 58 59 77 72 7e-14 MKIKLVKSPIGRIETHKRTVRALGLKKIGQVVEKEDNPQIRGMIKQVSYMLEVEE >gi|289656188|gb|ADCS01000002.1| GENE 12 5372 - 5878 578 168 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|146297268|ref|YP_001181039.1| ribosomal protein S5 [Caldicellulosiruptor saccharolyticus DSM 8903] # 1 167 1 167 168 227 68 8e-59 MERSLINAAELDLEERVVAINRVAKVVKGGRNFRFSALVVVGDHNGHVGVGTGKALEVPE AIRKAVQDAKKHLIEVNLLDTSIPHQVTGVVGAGRVFLKPAHAGTGVIAGGAVRAVCELA GISDIRTKNLGSNNPRNTVNATIEALSQLKTAEKVARLRNKSVDEILG >gi|289656188|gb|ADCS01000002.1| GENE 13 5894 - 6256 425 120 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|143423|gb|AAA22702.1| ribosomal protein L18 [Geobacillus stearothermophilus] # 1 120 1 120 120 168 68 4e-41 MFNKIDRNANRIKRHKRIRNKISGTTTCPRLSVFRSGAHIYAQLIDDVKGHTMVSATTLD KSLGLENTKNMEAAKKIGETIAKRALDAGIEEAVFDRSGYLYHGRIKALAEAAREAGLKF >gi|289656188|gb|ADCS01000002.1| GENE 14 6274 - 6810 630 178 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|78042739|ref|YP_361103.1| ribosomal protein L6 [Carboxydothermus hydrogenoformans Z-2901] # 1 177 1 177 182 247 66 7e-65 MSRIGKKPIEIPAGVEVKVENNTVTVKGPKGELTQSFDRDMIIEIENSVLTVTRPSDSKK HRAMHGLVRTLINNMVIGVAEGYKKELEIVGTGYRAAKTGNKLALTLGFSHPLELEDPAG IEVEVPAPTKIIVSGIDKQKVGAYAAHIRSYRQPEPYKGKGIKYVDEHIRRKVGKTGK >gi|289656188|gb|ADCS01000002.1| GENE 15 6825 - 7220 518 131 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|158319557|ref|YP_001512064.1| ribosomal protein S8 [Alkaliphilus oremlandii OhILAs] # 2 131 3 132 132 204 73 7e-52 MMTDPIADMLTRIRNGNNARHKSVDIPASNIKKEISEILLKEGYIKNYEVIEDDKQGIIR IDFKYGDNKERVISGIKRISKPGLRVYAQSSDIPKVLGGLGIAIVSTSKGILTDKEARAN GVGGEVICYVW >gi|289656188|gb|ADCS01000002.1| GENE 16 7251 - 7436 293 61 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169823865|ref|YP_001691476.1| 30S ribosomal protein S14 [Finegoldia magna ATCC 29328] # 1 61 1 61 61 117 86 8e-26 MAKKSMIAKQKRKPKYSTREYTRCKICGRPHSVLKKYGICRICFRELAYKGQIPGVRKAS W >gi|289656188|gb|ADCS01000002.1| GENE 17 7452 - 7994 716 180 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169823864|ref|YP_001691475.1| 50S ribosomal protein L5 [Finegoldia magna ATCC 29328] # 1 180 1 180 180 280 73 8e-75 MTSRLREKYENEVVNYLLEKFGYKNVMEVPKLEKVVINIGLGEAKDNPKALESAVNDLTL ISGQKPIVTLARKSIANFKLREGHKIGCKVTLRGEKMYDFLDKLMNVALPRVRDFRGVKD TSFDGRGNYALGLKEQLIFPEIEYDKVDAIRGMDIIVVTTAKTDEEAKAFLERMGMPFAK >gi|289656188|gb|ADCS01000002.1| GENE 18 8006 - 8314 331 102 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227901825|ref|ZP_04019630.1| ribosomal protein L24 [Finegoldia magna ATCC 53516] # 1 102 1 102 102 132 61 3e-30 MRIKKGDTVKVIAGKDKGKTGKVLKTFPREDRVIIEKVNMVTKHMKAKGPQNPGGIEKKE APIHVSNVMYFDTKTNKATRLGYKIEDGKKIRFKKSDGQPIK >gi|289656188|gb|ADCS01000002.1| GENE 19 8330 - 8698 504 122 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169823862|ref|YP_001691473.1| 50S ribosomal protein L14 [Finegoldia magna ATCC 29328] # 1 122 1 122 122 198 83 3e-50 MIQQETRLRVADNSGAKELLVIKVLGGTNRKTASIGDVVVCSVKTATPGGVVKKGSVVKA VIVRTSKGISRKDGSYISFDDNAAVIIKDDKSPVGTRIFGPVTRELRNGNFMKIISLAPE VL >gi|289656188|gb|ADCS01000002.1| GENE 20 8719 - 8973 335 84 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|150392151|ref|YP_001322200.1| ribosomal protein S17 [Alkaliphilus metalliredigens QYMF] # 1 84 1 84 84 133 75 1e-30 MERNNRKTIVGTVVSDKMDKTIVVAVETFVTHPIYKKRFKKTTKFKAHDEKNECGIGDKV KIMETRPLSKDKRWRLVSIIEKAQ >gi|289656188|gb|ADCS01000002.1| GENE 21 8978 - 9184 232 68 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169823860|ref|YP_001691471.1| 50S ribosomal protein L29 [Finegoldia magna ATCC 29328] # 1 68 1 68 68 94 67 1e-18 MKTKEIRQMSSEELNKKVIELKSELFNLRFRLATGQLDNPSSIKSVKRDIARVKTIIRQR ELAVGKEA >gi|289656188|gb|ADCS01000002.1| GENE 22 9174 - 9605 602 143 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169823859|ref|YP_001691470.1| 50S ribosomal protein L16 [Finegoldia magna ATCC 29328] # 1 143 1 147 147 236 76 1e-61 MLMPKRVKYRRVHRGRMKGKALRGNTLTYGGYGLQALEPAWITSNQIEAARRAMTRYIKR GGNIWIKIFPDKPVTEKPAETRMGSGKGAPAYWVAVVKPGRIMFEMDGVDEETAREAMRL AAMKLPIKTKFVMKEKDGESNED >gi|289656188|gb|ADCS01000002.1| GENE 23 9632 - 10393 887 253 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169823858|ref|YP_001691469.1| 30S ribosomal protein S3 [Finegoldia magna ATCC 29328] # 1 249 1 244 244 346 70 1e-94 MGQKVNPHGLRVGIIKDWDSKWYANKKNFADLLVEDNKIRKYIKKKLYTAGISKVEIERA ANKVKVSISTAKPGMVIGRGGVGVEELRTELEKLTKKSVVLNIEEIKNQDLDSQLVAEAI AESLERRVSFRRAMKQAIQRTMRAGALGIKTAVSGRLGGADMARTEGYSEGTIPLQTLRA DIDYGFAEADTTYGKLGVKVWLYKGEVLPEKKDEKKNNRDNKRRRPQNKDNRDNKRNNNR KNFRNDSKDKKEN >gi|289656188|gb|ADCS01000002.1| GENE 24 10406 - 10741 444 111 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227901831|ref|ZP_04019636.1| ribosomal protein L22 [Finegoldia magna ATCC 53516] # 1 111 3 113 114 175 76 3e-43 MEARAIAKYVRISPLKVNYICAEIRGKQVDEALSILKFTPKRGAKELYKVLNSAVANAEN NLNLNRDNLYVKKAYANDGPTMKRFHPKAKGMAYPILKRSSHIGVVVAEQE >gi|289656188|gb|ADCS01000002.1| GENE 25 10758 - 11045 408 95 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|134298097|ref|YP_001111593.1| ribosomal protein S19 [Desulfotomaculum reducens MI-1] # 1 94 1 94 94 161 75 4e-39 MSRSVKKGPFADEHLLKKIDALNEANEKKVVKTWSRRSTIFPEMVQHTIAVHDGRKHVPI YITEDMVGHKLGEFVPTRTFRGHVGKNEKTTGLKK >gi|289656188|gb|ADCS01000002.1| GENE 26 11060 - 11890 1102 276 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227901833|ref|ZP_04019638.1| ribosomal protein L2 [Finegoldia magna ATCC 53516] # 1 276 1 276 276 429 75 1e-119 MAIRGYKPTSPARRQMTVSTFEEITKKAPEKSLTINLKTTAGRNAQGRITSRHRGGGVKR RYRIIDFKRNKDGVPATVASIEYDPYRTSYIALLNYVDGEKRYILAPNGLKVGDKVESGE NADIKIGNALKLKDIPVGTTVHNVEMTPGKGGQLARSAGSEAQLMAKEGKFAQLRLPSSE FRLVSVDCKATIGQVGNLSHELITLGKAGKSRYLGNRPHVRGSAMNPVDHPHGGGEGRAP IGRPSPVTPWGKPALGLKTRKKNKKSDKYIVRRRTK >gi|289656188|gb|ADCS01000002.1| GENE 27 11907 - 12197 309 96 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|188584838|ref|YP_001916383.1| LSU ribosomal protein L23P [Natranaerobius thermophilus JW/NM-WN-LF] # 1 93 1 93 93 123 62 1e-27 MNAYDIIRRPIVTEKSMDQMEHGKYTFEVSKDATKAEIKRAVEEVFGVKVKTINTMNMRG KLKRQGAHQGRRPSWKKAIVKLTEDSKAIEFFEGME >gi|289656188|gb|ADCS01000002.1| GENE 28 12197 - 12820 719 207 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169823853|ref|YP_001691464.1| 50S ribosomal protein L4 [Finegoldia magna ATCC 29328] # 1 206 1 206 207 281 66 3e-75 MPKIQVVNMEGAAVSEIELNENIFDIDINEHAVYLVVKNILANRRQGTKSAKTRAEVRGG GRKPWKQKGTGRARQGSIRSPQWRGGGIVFAPKPRDFSYTTPKKVRRLALRSALTSKVRE NEMIVVDDIKMNDAKTKNFVQMLKAIKADPKALVVVAGYDEKVKIAARNIPNVKTTMAEN INVYDILKYNSLVITEDALRVIEEVFN >gi|289656188|gb|ADCS01000002.1| GENE 29 12838 - 13470 685 210 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|158319543|ref|YP_001512050.1| ribosomal protein L3 [Alkaliphilus oremlandii OhILAs] # 1 210 1 210 210 268 59 3e-71 MKLLIGKKIGMTQIFDEEGKVTPVTVIEAEPNVVVQKKTVEVDGYNAVQVATGFVKERRV NKPLKGHFAKAGVECKKNLREFRTEEVENYNIGDEIKVDLFSVGEFIDVTGTSKGKGTQG VIRRHGFGRGRETHGSKFHRMPGGMGAATYPGKVFKNHRMAGKMGNEQVTVQNLEVVRVD LEKNLILVKGAIPGPKKGIVTLKETVKAHK >gi|289656188|gb|ADCS01000002.1| GENE 30 13531 - 13848 389 105 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|167755911|ref|ZP_02428038.1| hypothetical protein CLORAM_01431 [Clostridium ramosum DSM 1402] # 1 105 1 102 102 154 71 6e-37 MSNNSKQKIRIRLKAYDHELIDSSASKIVEAAKQTGATVSGPIPLPTEKEVVTILRAVHK YKDSREQFEQRTHKRLIDIINPNQKTVDSLMKLNLPAGVDIEIKL >gi|289656188|gb|ADCS01000002.1| GENE 31 14219 - 14596 408 125 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|299143196|ref|ZP_07036276.1| ## NR: gi|299143196|ref|ZP_07036276.1| inheritance of peroxisomes protein 2 [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 125 1 125 125 199 100.0 4e-50 MLTVLFKVKSGSKAEEEFLSLATQPIYAEVLMGEDARKSLSDNNVADATNGEEINDFVKM SYNEKREKIKENILKAIKEKEEGRQFVWTPTGLELMKKYYPDLYDRLSEEEKQGEVMSSE GEQLN >gi|289656188|gb|ADCS01000002.1| GENE 32 14751 - 16472 216 573 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 330 551 279 507 563 87 29 7e-17 MINRIKKMFGLTETGARGLVRASISSFFMYLAYMAPIILIMYFIQGLIENNLNGINFYIV GILVLAIAMYAIIYINYNTLYMEVYKESANLRIEIANILKALPLSYFSKHDISDLSQAVM KDVSDIEHAMSHAIPQVIGFIIYLIVISIMMLTGNFKLGLCVIIPVVLSFIMLILSKKFQ IYGTTKYYKNLRENSESFQEAIELQQEIKSYGQSEKVAEDLNRKVEKTEKIHIASEFYQA IPVSLSSSVLRFTLGLTILFGSILYIRGEVSLLYLIGYLAAASKIIDGVSGLYMNIAEIL YIDARIKRIQELRGVQLQGGEKFDIKQYDIEFKDVEFSYNDERKVIDKVSFIAKQNEVTA LVGPSGCGKTSILRLMSRLYDYDKGQIIIDGKEIKNIDTDSLFEKISIVFQDVTLFNTSV MENIRIGNKNASDEDVIKAAKLANCNEFIEKLPDGYNTFIGENGSKLSGGERQRISIARA ILKDAPIIILDEISASLDVENEMKIQEGLNTLIKNKTVVIISHRLKSIEKADKIVVLENG KVESIGKHDELMKTSKLYNRMIQRSNITEEYLY >gi|289656188|gb|ADCS01000002.1| GENE 33 16465 - 18207 239 580 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 336 558 2 228 245 96 27 2e-19 MNTYKKLLSYVPEKKHDAYISMILSVISCFLLMGPYWYFWKFLNELIVNGNVENSKYYAV LIVVMMIANSIVYFFALWASHLLAFRLETNLRKVGIKYLMNSSFAFFDMNSSGKIRKIID DNAAETHMIVAHLIPDLVGAVITPILMVMITFMVDIKFGIAIIILIVIGGIEVNWMMGNK EFMATYMASLEKLNSEAVEYVRGMQVVKIFRSTIHSFKAFYESIMSYSKYAFNYTISCRT PYVAFQVLFNIFAVISIPFAIYFLNRGVNPKFVLAKTVFFMCFAGIMFTCFMKIMYVGMY QYMGVSAVEKLEKLFEGMSVENLKHGNIEKFDSYNIEFKNVSFKYEDDYVLKNVSFSLKD KRVYALVGSSGSGKSTIAKLISGFYKVNEGDILIGERNISEYSQKALMSNIAFVFQNSKL FKTTIFENVKMGNENASYEDVMNALKSARCDDILDKFKDRENTVIGSKGVYLSGGEIQRI AIARAILKNANIIILDEASAAADPENEYEIQQAFSNLMKDKTVIMIAHRLSSIRNVDEIL VIEDGNVIERGTDKELMNIEGKYSALQALFAKANDWRIYD >gi|289656188|gb|ADCS01000002.1| GENE 34 18209 - 19162 746 317 aa, chain - ## HITS:1 COG:BMEII0104 KEGG:ns NR:ns ## COG: BMEII0104 COG2207 # Protein_GI_number: 17988448 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Brucella melitensis # 210 315 117 222 233 68 30.0 1e-11 MLGLDFIINVMDIKGLRFVGEENKFYKFTGKNGEKLDMYCAEIFDGVLVAITDYEDVVSY ISPEEIYIENLNLSYCLEGRIEWGLKDNRYTYLSKKSFMVDTCPLSVQSYSFPMKKFKGI TYMISINNINEHTKNIFSLFGVDILEIYEKFKIHKTYMKRDNPRINEILYGFNSHDFLNV NTYRIKLIEILNYIQNLDTSEKDVLTYYKSSQVKKVKDIRSFLIGDLSKRYTIEFISEKF NISMTTLKKLFKEIYGMPINSYLIDYKINEAEILLKESEKSITEIANLLGYSNVSKFSKI FKDMKGCSPSKFRNMRR >gi|289656188|gb|ADCS01000002.1| GENE 35 19464 - 20204 858 246 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|299143200|ref|ZP_07036280.1| ## NR: gi|299143200|ref|ZP_07036280.1| putative secreted protein [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 246 1 246 246 414 100.0 1e-114 MRDFMTKTAIVAVVFSCLTVGSFFAFDYKNVKDKVFCEDYWNNSISNQMDREYKSVLKEN GKFDSIKINSTNLSIAIVESEEDKYELYSKIPNADFRKYINISTSKDDGGFECKVDEIKS TNKNVFKIVFYTTDPKSLAVKIDSVNGSIDVDGVLKNLDVDFTNGAINLNAEESYNANIE TINGIVSINFKKIDAVISVEAVNGVIKFLDESRISVGGVHEFNKKIGNGRDEIDIEMVNG EVYISE >gi|289656188|gb|ADCS01000002.1| GENE 36 20204 - 20848 562 214 aa, chain - ## HITS:1 COG:CC3409 KEGG:ns NR:ns ## COG: CC3409 COG4709 # Protein_GI_number: 16127639 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Caulobacter vibrioides # 1 181 1 166 187 71 31.0 1e-12 MKKKEFLDLLRYYLKDMPRIVVDDIISDYEEHFSFAVERGKSEEQICDELGAPELIAKDY MKNEGKKLKVQMQDYDYTENREKKKKSSNDTLLIILIVIGGIIFLGPILGVGMGIFGAIF GLLASIIAIGGSFILVGLALPLSLIPTVIYPNFISIPSIFMEINPITKIFATISLITIGV LFIGLAIKLFKTVIKGIKNIFVAIRWKINKRREM >gi|289656188|gb|ADCS01000002.1| GENE 37 20845 - 21159 319 104 aa, chain - ## HITS:1 COG:CAC0571 KEGG:ns NR:ns ## COG: CAC0571 COG1695 # Protein_GI_number: 15893861 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Clostridium acetobutylicum # 1 101 1 101 107 115 61.0 2e-26 MNIQFKKGVLELLVLSLLMEKDMYGYELVEEISTHVNISEGTIYPLLRRLKDERYVETYL EESQSGPPRKYYKLTDAGKDECIFQLKEWDDFIKSVNFILRRQI >gi|289656188|gb|ADCS01000002.1| GENE 38 21405 - 22460 1653 351 aa, chain + ## HITS:1 COG:MPN564 KEGG:ns NR:ns ## COG: MPN564 COG1063 # Protein_GI_number: 13508303 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Threonine dehydrogenase and related Zn-dependent dehydrogenases # Organism: Mycoplasma pneumoniae # 1 351 1 351 351 477 65.0 1e-134 MKGFAMLGIGQTGWIEKERPVCGPLDALVRPLALSPCTSDVHTVWEGAIGDRHDMILGHE GCGIVEEVGSLVKDFKPGDRVMVAAITPDWSSLEAQAGYSMHSGGMLAGWKFSNFKDGVF GELFHVNDADGNLAHLPDSISPEEACMLSDMVPTGFHGVELADVQFGDTVLVVGIGPVGL MAVAGANLRGASRIICVGTRQICRDVAKGYGATDFIGYKDGSIDEQVLALTDGKGVDKAI IAGGGVETFEPVIKCLKPGGKIGNVNYLGSGTYINIPRVEWGVGMGHKQILGGLMPGGRL RLEKLASLIECGKLDVKPMLTHKFKGFEHVEDALMLMKNKPSDLIKPVVVL >gi|289656188|gb|ADCS01000002.1| GENE 39 22502 - 23488 1103 328 aa, chain + ## HITS:1 COG:FN0779 KEGG:ns NR:ns ## COG: FN0779 COG0523 # Protein_GI_number: 19704114 # Func_class: R General function prediction only # Function: Putative GTPases (G3E family) # Organism: Fusobacterium nucleatum # 1 300 1 292 294 187 39.0 2e-47 MKILLISGFLGSGKTSFIKAMSKATKRQFVIVENEFGDMGIDGEILKSDTLNSKNTDMKI WELSEGCICCSLNLDFTHSVLTIANTLNPDYLIVEPSGVAFPSKIISQLRKICYERIELL PLITIIDAYHYKNSKKDFPDYFYDQLNNASSIILSKSESMDYNNFLSIKNELNIDDKTFF PTTHYSKWSEDIWFNLLNGNIDYTRENKISNIEITKEQQLDNISITNIGITNPATLTIAL SILISGTLGKIVRAKGYFKAGRDWIKFDLVDGSYAITGCTPMPDNRVVVIGNNLNKSSIK MLFENKVIKKLKNISAIKSKNLSIKNRR >gi|289656188|gb|ADCS01000002.1| GENE 40 23512 - 24192 754 226 aa, chain - ## HITS:1 COG:BH0231 KEGG:ns NR:ns ## COG: BH0231 COG0664 # Protein_GI_number: 15612794 # Func_class: T Signal transduction mechanisms # Function: cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases # Organism: Bacillus halodurans # 30 221 28 220 237 84 26.0 2e-16 MDTIDYKKTPLLKYLTEEEIKRFISKPRIKEFKKGEYIFRSKDEARQMYIVYDGFMKISM FLSDGREQILYIYKEGDFVGGFNIISGDRYVYTSVALTDTKIIIIHKEDFEDILLKNVKI LRKLLDQSYYRIRKSEELIDRLSVINADMKVAKLLIDLIKICGKKKNNKILLDLNINREE LGSYTGVSRETISRKLNHFETMNIISLLPKGKILIEDLEALYDMTI >gi|289656188|gb|ADCS01000002.1| GENE 41 24194 - 24940 907 248 aa, chain - ## HITS:1 COG:CAC0981 KEGG:ns NR:ns ## COG: CAC0981 COG1180 # Protein_GI_number: 15894268 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Pyruvate-formate lyase-activating enzyme # Organism: Clostridium acetobutylicum # 1 238 1 236 237 236 50.0 3e-62 MAKLHSIETFAVFDGPGVRTVFFLQGCPLRCAFCHNVDTQNPFGGRNITVEEIVERSRKM KPYFRNGKGGVTFSGGEPTLDGKFLLDAIKAVKAEGIHVTVDTSGVGDQKYYDEIIEEAD LILLDIKHYNAIGFKNITERNISPLKKFIEAVERHNTPVWIRHVMMPKVTDSKYHMDKLC EFIAPIKDKIEKIEILPYHTMGVHKYEDLGIEYKLKDMEAMDKNVAKELEEYANDVLQSY EVKYHKVI >gi|289656188|gb|ADCS01000002.1| GENE 42 24965 - 27208 2773 747 aa, chain - ## HITS:1 COG:CAC0980 KEGG:ns NR:ns ## COG: CAC0980 COG1882 # Protein_GI_number: 15894267 # Func_class: C Energy production and conversion # Function: Pyruvate-formate lyase # Organism: Clostridium acetobutylicum # 1 746 2 742 743 1045 67.0 0 MNAYEGFKGTKWQESIDVRAFIQDNYKPYTNDESFLEGKSEKTAKLWDKVDKLILDEIKN NKRKADTTKFSAIDAYEAGYIDKDNEVIVGLQTDEPLKRIVNPYGGYRMVQESLDAYGLK MDETAQKYFKEFRKTHNEGVFDAYTTQTRKARTVGLLTGLPDAYGRGRIIGDYRRIALYG IDRLIEEKQKDKENITGNALEATIRLREEVSEQIRALQKIKDMAMKYGVDISKPATNATE AVQYLYMGYLAAVKENNGAAMSLGRNTNFIDIYIERDMERGILDEVGAQELIDQFVIKLR IVRHLRTPDYDELFGGDPNWITESIAGIGLDGRPLVTKTSFRFLHTLINLNPAPEPNMTI LWSENLPEAFKKYCAKISILTDSIQYESDELMRPLYGDDYAIACCVSAMKVGKEMQFFGA RANLAKSLLYAINGGVDEIKKDKDGNPIRVFDGIEPITSEVLDFDEVFANYERVMEKLAP LYINTLNTIHFMHDKYAYEAGQMALHDTNIRINMACGVAGLSIAADSLSAIKYAKVKPIR DENGLAVDFETVGEFPKYGNDDDRVDDLAVAIVKKFSSELKKTPTYKNARHTLSILTITS NVMYGKKTGTTPDGRKKGEPFAPGANPMHGRDENGALASLNSVAKIPYEEICEDGISNTF TIVPDALGKSDKAKVDNLVTIMDGYFGQKAFHLNVNVLNKEKLMDAYENPEKYPNLTIRV SGYAVHFNRLSDEQKREVLSRTFHQRA >gi|289656188|gb|ADCS01000002.1| GENE 43 27524 - 28858 199 444 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 96 392 124 405 458 81 27 7e-15 MSKIVVIGANHAGTACINTILGAKTKDEVVVFDRNNNISFLGCGMALWIGNQIHSGDGLF YSNKEKLEAAGAKVNMESEIKSIDFEDKKVNAVLKDGTTVSESYDKLVLATGSIPVVPNI PGKDLENVQLVKLYQNAQEVIEKLKNPEIKNITVVGAGYIGVELAEAFERHGKNVTLIDV CDTVLASYYDKEFSQKMQDVLVNHGIKTVFEETVIEIKGDGKVESVVTDKGEYKSDMVIL SIGFKPNNELGKEKLELFKNGAYLVNKKQETSIKDVYAIGDCATVYDNTIGDRNYIALAT NAVRSGIVAASNIVGTELETIGVQGSNGISIYDYKMVSTGLSVKKANSLGIEVEYVDFND LQKPEFIETENPEVKIRIVYDKKTRVILGAQIASYYDMSMGIHMFSLAIQEKTTVDKLKL LDIFFLPHFNKPYNYITMAALNAK >gi|289656188|gb|ADCS01000002.1| GENE 44 28809 - 28913 61 34 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIMVVYWFVSTYPDDRSFIILRLMLPLLYNCTVC Prediction of potential genes in microbial genomes Time: Fri May 27 07:11:42 2011 Seq name: gi|289656187|gb|ADCS01000003.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.3, whole genome shotgun sequence Length of sequence - 2551 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 12 - 2549 2469 ## COG4932 Predicted outer membrane protein Predicted protein(s) >gi|289656187|gb|ADCS01000003.1| GENE 1 12 - 2549 2469 845 aa, chain - ## HITS:1 COG:L83620 KEGG:ns NR:ns ## COG: L83620 COG4932 # Protein_GI_number: 15672666 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted outer membrane protein # Organism: Lactococcus lactis # 532 658 208 332 336 76 38.0 3e-13 EKTWNDNNDQDGKRPTEIKINLMKKVGDGPVVKKETKTVTAADGWKWSWKGLPEYEGGKK ITYSITEEAVADYTTQINGYNVTNNHTPEETSVKVTKKWDDANNQDGKRPNSIKVQLYAD DKKVGDEVELNNGNSWTYTWEKLPKNAAGIPIAYTVKEVGTVDGYITSYGNDSQGNVIIT NSHTPEKVKVEGEKTWDDAEDQDGKRPKEIIVNLLANGNKIKEVKVTKDDNWKYSFTDLP KYENGQEIKYTVTENVVSEYKTEITGYNIKNSYTPGKTSVTVTKNWDDANNQDGKRPESI KVQLYGDDKKVGDEVELKKKTGWTYTWNDLPEKKAGKTIKYTVKEVGEINGYITSYDDAN HGNIIITNKHTPEKVKVEGEKTWDDNNDQDGKRPTTITVKLLKKVGSGAPVVVQTKQVSK GDDGKWKYEFNDLPKYEDGKEIIYSIKEEPVDGYETEINGYNITNKHKPEKVEVEGEKTW NDNNNQDGKRPTKIIIKLLKKVGNEAAVIKETKEVTEGADHKWKWKFENLDKYENGKLIT YSIEEEKVDGYETEINNYDVTNSHTPEKINIEGAKTWDDANNQDGKRPTEIIINLLKNGT KIDSKKVTKADGWKWKFENLDKYENGQEINYTITEEKVEGYSTTVKGYNVKNSYTPGKTS IQVTKVWRDNNDQDGVRPDSVIIQLLADGVEVPGKTLTLTKANNWTGSFTNLDEYKDGKK IKYTIREVAIGNGYVSVITGTAEEGYVVINTRKPWRPPYEPPTPPTPPEVPPYTPPHTPP EVPPTPPTPPEIPQTPPEVPSTPPEVPQEKKIPKTGFMDQTAYLGIATVIAGICGVYVFK KKKED Prediction of potential genes in microbial genomes Time: Fri May 27 07:11:54 2011 Seq name: gi|289656186|gb|ADCS01000004.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.4, whole genome shotgun sequence Length of sequence - 34503 bp Number of predicted genes - 35, with homology - 33 Number of transcription units - 15, operones - 7 average op.length - 3.9 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 3250 2760 ## COG4932 Predicted outer membrane protein - Prom 3292 - 3351 16.2 2 2 Tu 1 . + CDS 3777 - 3944 166 ## - Term 3884 - 3943 4.2 3 3 Op 1 4/0.000 - CDS 3947 - 4315 414 ## COG3862 Uncharacterized protein with conserved CXXC pairs 4 3 Op 2 6/0.000 - CDS 4312 - 5574 1896 ## COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases 5 3 Op 3 3/0.000 - CDS 5584 - 7011 1723 ## COG0579 Predicted dehydrogenase - Term 7023 - 7068 9.0 6 3 Op 4 . - CDS 7088 - 8575 1508 ## COG0554 Glycerol kinase 7 3 Op 5 1/0.000 - CDS 8575 - 9456 882 ## COG0647 Predicted sugar phosphatases of the HAD superfamily 8 3 Op 6 11/0.000 - CDS 9366 - 10664 1828 ## COG1593 TRAP-type C4-dicarboxylate transport system, large permease component 9 3 Op 7 11/0.000 - CDS 10661 - 11131 446 ## COG3090 TRAP-type C4-dicarboxylate transport system, small permease component - Term 11145 - 11180 5.2 10 3 Op 8 . - CDS 11186 - 12241 315 ## PROTEIN SUPPORTED gi|149199369|ref|ZP_01876406.1| Ribosomal protein L22 11 3 Op 9 . - CDS 12289 - 12999 871 ## COG0584 Glycerophosphoryl diester phosphodiesterase 12 3 Op 10 . - CDS 13008 - 13664 779 ## COG1285 Uncharacterized membrane protein - Prom 13686 - 13745 6.2 - Term 13671 - 13738 13.0 13 4 Op 1 . - CDS 13800 - 14369 836 ## COG1954 Glycerol-3-phosphate responsive antiterminator (mRNA-binding) - Prom 14398 - 14457 6.3 14 4 Op 2 . - CDS 14459 - 15778 1375 ## COG0527 Aspartokinases - Prom 15828 - 15887 6.8 + Prom 15780 - 15839 7.9 15 5 Tu 1 . + CDS 15912 - 16595 797 ## COG1802 Transcriptional regulators + Term 16740 - 16792 10.4 + TRNA 16666 - 16741 93.9 # Lys CTT 0 0 - Term 17020 - 17055 1.1 16 6 Op 1 . - CDS 17061 - 17642 529 ## COG1451 Predicted metal-dependent hydrolase 17 6 Op 2 . - CDS 17644 - 19119 1580 ## COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes 18 6 Op 3 . - CDS 19130 - 20959 2185 ## COG1217 Predicted membrane GTPase involved in stress response - Prom 20985 - 21044 9.3 - Term 21046 - 21084 5.2 19 7 Tu 1 . - CDS 21110 - 21508 414 ## FMG_1043 hypothetical protein - Prom 21543 - 21602 5.5 + Prom 21531 - 21590 9.8 20 8 Tu 1 . + CDS 21685 - 21849 339 ## COG1773 Rubredoxin + Term 21862 - 21897 6.0 - Term 21850 - 21885 6.0 21 9 Op 1 . - CDS 21924 - 22370 514 ## Elen_1414 hypothetical protein 22 9 Op 2 . - CDS 22354 - 22791 344 ## HMPREF0424_0946 hypothetical protein 23 9 Op 3 . - CDS 22788 - 23453 463 ## Clos_0666 hypothetical protein - Term 23493 - 23528 2.5 24 9 Op 4 . - CDS 23531 - 24094 291 ## Cphy_1856 TetR family transcriptional regulator - Prom 24129 - 24188 11.4 - Term 24382 - 24441 4.1 25 10 Tu 1 . - CDS 24564 - 25820 1782 ## COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase - Prom 25845 - 25904 8.9 - Term 25878 - 25907 0.5 26 11 Op 1 47/0.000 - CDS 25925 - 26308 397 ## PROTEIN SUPPORTED gi|114778902|ref|ZP_01453699.1| ribosomal protein L7/L12 27 11 Op 2 . - CDS 26341 - 26880 433 ## PROTEIN SUPPORTED gi|227902523|ref|ZP_04020328.1| ribosomal protein L10 - Prom 27070 - 27129 10.2 - Term 27238 - 27277 4.0 28 12 Tu 1 . - CDS 27439 - 28299 912 ## COG1266 Predicted metal-dependent membrane protease - Prom 28385 - 28444 5.7 + Prom 28592 - 28651 13.9 29 13 Op 1 . + CDS 28799 - 29539 329 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 30 13 Op 2 . + CDS 29557 - 31656 1820 ## Amet_0367 S-layer-like domain-containing protein 31 13 Op 3 . + CDS 31680 - 33011 1403 ## COG0577 ABC-type antimicrobial peptide transport system, permease component + Term 33095 - 33144 10.2 - Term 33083 - 33132 3.1 32 14 Tu 1 . - CDS 33193 - 33306 61 ## - Prom 33414 - 33473 5.3 - Term 33376 - 33418 6.5 33 15 Op 1 . - CDS 33478 - 33798 460 ## COG3070 Regulator of competence-specific genes 34 15 Op 2 . - CDS 33820 - 34248 394 ## COG0346 Lactoylglutathione lyase and related lyases 35 15 Op 3 . - CDS 34305 - 34496 224 ## gi|283769192|ref|ZP_06342096.1| TnpX site-specific recombinase family protein Predicted protein(s) >gi|289656186|gb|ADCS01000004.1| GENE 1 1 - 3250 2760 1083 aa, chain - ## HITS:1 COG:lin0202 KEGG:ns NR:ns ## COG: lin0202 COG4932 # Protein_GI_number: 16799279 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted outer membrane protein # Organism: Listeria innocua # 591 973 46 400 681 67 24.0 1e-10 MNSKKILSFMLSFIMMCSVLFQAGSAYANMDNFNLNGMEANEMQRFMPPPMHGEVFPGEI PPDFPPHGEMMQNPPGWGMQPHGEMMPIEQIPNFIPPNGEPIPMEEPDFIYPDENEVQNN ELEAAIPELKNEDSDKEALPEIGKADMNDEITESENKSEVQPNSNNVNIDVRVSPEDAIP QFLKNIKSMEEGNILKNELGLEVKTEITVGEPDINQQVQLTIKWDASMYGADLKEGDFFN VLLPKEYIFTYGEFDIPTPDYADVIAKAVITPEPTGGGNIKVTFTKYVEEKDNIKGEVFL EATVAPQNIPEVSEDIREELKDVKTEITVSEIVAPEENTPEDESNINQQVKLKMKWDASM YGAGLKEGDFFNVLLPKEYVFAYGEFDIPTPDYADVIAKAVITPEPTGGGNIKVTFTNTV EGKEDVKGEVFLEATVTPQNIPEVPEDTKEALKDITTKIIGPEEHNIFENIPDINKPVQL TIEWDASMYGAGLKEGDFFNVTLPKTYIFTDREFDIPTPDGTDVIAKAVVTPESTGGGNI KVTFTKAVEGKEDVKGEFVLEATVALQNLLGEAKDTGEPLNCVNVKITKFEIKDKDGNTI PPGTQLGYWSTFRLEMDWDASSYGKTLKKGDYFIVTLPKQFKFPTEPASVVNFPLYAPDG TTVIANAHVDSNGEAGGGTVKVTFTDYVVNRENIHGNMYLGATFAHHNINAGQTNTITVS IGGVPTSTDIPIGPKPTLNNEVFNKWGGKVNGNENQAQWVLRINHKKGNFNNVVIKDELF VDSGSLPPGIHYLPDTFELKEVEMDEFGVVTKVVKTYDYNQLKNHITFSNNNTKFEFKFS QMLGNTSGKQFIMAYKSTYIPQLKLKNKGSFTSNEENGSSSGYFLSAQVGGGGQGDLNQK IKIIKIDADDNQIKLANAKFKITKVADGSSFELTTDANGEAVSPKLDPGKYKIKEIEAPL GYILDGTEHELTIVGGEAIFYTVKNDKKTIDVEGEKTWNDNNDQDGKRPTEIKINLMKKV GDGPVVKKETKTVTAANGWKWSWKGLPEYEGGKKITYSITEEAVADYTTQINGYNVTNSR TPG >gi|289656186|gb|ADCS01000004.1| GENE 2 3777 - 3944 166 55 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLHNIAILINLKDTPLKIKNKILYQSYFPSSPFIFVWTENKKIKVESSQTQPFLF >gi|289656186|gb|ADCS01000004.1| GENE 3 3947 - 4315 414 122 aa, chain - ## HITS:1 COG:TM1434 KEGG:ns NR:ns ## COG: TM1434 COG3862 # Protein_GI_number: 15644185 # Func_class: S Function unknown # Function: Uncharacterized protein with conserved CXXC pairs # Organism: Thermotoga maritima # 5 119 4 118 138 103 41.0 7e-23 MKELNMTCISCPMGCMMKLKVDNEKNLLSIEGNNCKRGELYAKDEVKNPKRMVCSTVRVI GGIMPIVSVKTEMPIPKDKIFNIMEEINRVQIKAPVEIGYIVLKNVCNTNVNIIATSNVI IK >gi|289656186|gb|ADCS01000004.1| GENE 4 4312 - 5574 1896 420 aa, chain - ## HITS:1 COG:CAC1323 KEGG:ns NR:ns ## COG: CAC1323 COG0446 # Protein_GI_number: 15894603 # Func_class: R General function prediction only # Function: Uncharacterized NAD(FAD)-dependent dehydrogenases # Organism: Clostridium acetobutylicum # 4 420 3 417 417 427 57.0 1e-119 MREYDIVIVGGGPAGLSAAIKAREDGIESILLLERDRVLGGILNQCIHNGFGLHTFKEEL TGPEYADRFVKQLVEKNIEYLPSTIVLNITNDKILTIMNENSIENIKAKAVILAMGCRER PRGSLNIPGYRPAGIYTAGTAQRLINMEGIMPGKEVVILGSGDIGLIMARRMSLEGAKVK VVAELMPYSSGLKRNIVQCLDDYGIPLKLSHTIVEIKGKNRVEGIVIAEVDEKLRTIEGT EEYYSCDTILLSCGLIPENELSNMMGVEIDPVTRGPVVSDNLMTNIDGVFACGNVLHVHD LVDYVSEEAAMAGLFAAKYVKSGMKQGREKIVTIPRDGVRYIVPKYIDKQNENEKITLRF RVLNVYKNKNICVYFNDEKIMTKKKKILAPAEMEQIIIKRDELKKYGELKEIIISVEDAE >gi|289656186|gb|ADCS01000004.1| GENE 5 5584 - 7011 1723 475 aa, chain - ## HITS:1 COG:FN0183 KEGG:ns NR:ns ## COG: FN0183 COG0579 # Protein_GI_number: 19703528 # Func_class: R General function prediction only # Function: Predicted dehydrogenase # Organism: Fusobacterium nucleatum # 1 475 23 498 498 424 47.0 1e-118 MIDVIIIGAGVSGSATARELSRYKGKFLVLEKEEDVCSGTSKANSGIVHGGYDAKEGSLM AKLNVEGNKIMGDLSEELDFPFERIGSLVVCFEEEGIAKLHELKKRGEMNEVDGLEVIDR KRLLELEPNIGNEAIAALHCKVAGIVCPFSLNIALAENAHTNGVEFKFNKEVVELKKRSY GWDVITKNEIFQTRAVVNAAGVYADVFHNMVSDEKIHITARRGNYLLLDKEAKGHINHTV FPLPTSKGKGILASPTVDGNLLIGPTAVDIEDKENTSTIKEDFDTLIKEVQKSVKNIPFN LVITSFCGLRAHEDKHDFIIGEVKDAENFFDIAGIESPGLTASPAIGKMMAKILSEKYKF EINDNFIAKRKGIEFTRNMTMKQHSEKIIENPKYGSIVCRCEKVTEAEIIDAIRRPLGAK TLDGVKRRTRAMAGRCQAGFCTPKIIQILARELGIDEAEVVKNSPLSKVAIGHTK >gi|289656186|gb|ADCS01000004.1| GENE 6 7088 - 8575 1508 495 aa, chain - ## HITS:1 COG:FN1839 KEGG:ns NR:ns ## COG: FN1839 COG0554 # Protein_GI_number: 19705144 # Func_class: C Energy production and conversion # Function: Glycerol kinase # Organism: Fusobacterium nucleatum # 3 494 2 495 497 650 64.0 0 MKKYVMAFDAGTTSSRTILFDKEGNIVSTAQKEFMQYFPLPGFVEHDANEIWSTQIGTAV EAMSKVGADASDIAAIGITNQRETTIVWDKNTGEPVYNAIVWQCRRTSKYCDELKEKGLT NFFREKTGLVIDAYFSATKIKWILDNVKGAREKAENGELLFGTVDTWLIWKLSGKKVHVT DYSNASRTLLFNINTLTWDDEILNLLDIPKTMLPEVKASSEIYGYSESKFLGDEIAIASA IGDQQSALFGQGCFESAEAKNTYGTGAFLLMNTGNKPIFSKNGLVTTIAWGLDGKINYAL EGSIFVAGSAIQWLRDELRVIDSSDDSEYMARKVKDTNDCYVVPAFTGLGAPYWDQYARG AIVGLTRGVNKYHIIRATLESLAYLSYDVLNAMEQDCGFNLKSLKVDGGASKNNFLMQFQ SDIIDCDVIRPSCVETTALGAAYLSGLATGFWKNLTDLKENCKIDKVFKPDMTDKNRIDK LNRWHKAVECAKNWA >gi|289656186|gb|ADCS01000004.1| GENE 7 8575 - 9456 882 293 aa, chain - ## HITS:1 COG:FN1255 KEGG:ns NR:ns ## COG: FN1255 COG0647 # Protein_GI_number: 19704590 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted sugar phosphatases of the HAD superfamily # Organism: Fusobacterium nucleatum # 26 292 10 275 275 282 56.0 6e-76 MAVYFGTVSRIIDSDILSDINYIFTGVDRMIKDFEVFLLDMDGTVYLGDKLIDGADYFFE SLIRNKKKYIFVTNNSSKNADDYVKKLTRLKIPAVKEQIFSSADATIIYIKKNYKDAKNI FLLGTESLENYFSEAGFNVINNSRDNIDLVVLGFDTTLTYEKLWMACDLIRDRGFYIATH PDFNCPLEEGKFMPDAGAMIAFIEASTNIKPLVIGKPNEMIISALCEKYGYDKSKLIIVG DRLYTDIKTAETSNIKSALVYSGETTRQMYNNSEIRADYEFNSVYDIARELDK >gi|289656186|gb|ADCS01000004.1| GENE 8 9366 - 10664 1828 432 aa, chain - ## HITS:1 COG:FN1256 KEGG:ns NR:ns ## COG: FN1256 COG1593 # Protein_GI_number: 19704591 # Func_class: G Carbohydrate transport and metabolism # Function: TRAP-type C4-dicarboxylate transport system, large permease component # Organism: Fusobacterium nucleatum # 7 431 3 427 428 416 60.0 1e-116 MNTTFISLLPILIVLILYFSSVPIVFALFGSTLFYFLFIDSGTSAVLVFQKFVSSTQNFS LLAIPFFIMAGSIMNYSGISEKLMEFADVLTGHLKGGLGHVNIVLSLLMGGVSGSANADA AMEAKMLVPEMERKGYSKEFSSAITAASSAVTPVIPPGINLIIYGIIASVSVSKMFIAGY VPGVLMSVALMITVALIAHKRDYSPTREKKATAGEIFTQAGKSIWALLFPFGIIASIRIG MITPSEAGAIAILYTVIVGKFIYKKLKWSDFIEIFKETVYGTGSVVLIIVAANVFGYYLS WEGIPQKLTQTMLGITTNKYLMLAFCNVILLILGMFIEGGAAMVITAPLLVPLMVQLGVD PLHFGMIIIVNIMLGGITPPFGSMMFTVCGITNCTIGGFVKEVWPFILALLVVLLIVTYC PILITFLPELIG >gi|289656186|gb|ADCS01000004.1| GENE 9 10661 - 11131 446 156 aa, chain - ## HITS:1 COG:FN1257 KEGG:ns NR:ns ## COG: FN1257 COG3090 # Protein_GI_number: 19704592 # Func_class: G Carbohydrate transport and metabolism # Function: TRAP-type C4-dicarboxylate transport system, small permease component # Organism: Fusobacterium nucleatum # 31 150 22 140 147 80 43.0 1e-15 MKKLFKNLEEITSSIFMMVTLILVLLNIFTRYFLKTGIPWSEEVATGCFVWTVYIGAAAA YKKGQHIGIDLIVKYLNGKNRDIVQIIVDLILLVVMIFLTILSIKYVQTTYKKPTPVLAI SSAYISSAIVIGFVLMTLRTIQILFKDTKKLKGGSI >gi|289656186|gb|ADCS01000004.1| GENE 10 11186 - 12241 315 351 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149199369|ref|ZP_01876406.1| Ribosomal protein L22 [Lentisphaera araneosa HTCC2155] # 6 333 9 331 346 125 25 3e-28 MKKAKVLGLLLALMLLAVGCGKKNNTAEQASANEPAKEEQSAETKDFKIVLKLSHVFAPE EQLTKSTDAAAKAIYERTNGAVEIQTYPQGQLPTYKDGLEQVYNGADFISVEDPSYLGDY VPDFKALVGPFIYSDIDQYTNMIKTDLVQDMIKKAEDEHGIKVLALDYVFGFRNMMTNKE IKEPADLKGMKIRVPGSQIFIDTINAMGATATPMAFSETISAVQQGVVDGLEGTVDAMTA NGSAEVVKNVGLTKHFLGTCGIYINKDVFNKIPKEYQEIIQEEFTKNAQEMTSNVKTNYD AQVKYLEEKGIAFNEVNLPAFQEATKVVFEKMEGISPDIYQKLLDEIAKMK >gi|289656186|gb|ADCS01000004.1| GENE 11 12289 - 12999 871 236 aa, chain - ## HITS:1 COG:BS_yqiK KEGG:ns NR:ns ## COG: BS_yqiK COG0584 # Protein_GI_number: 16079474 # Func_class: C Energy production and conversion # Function: Glycerophosphoryl diester phosphodiesterase # Organism: Bacillus subtilis # 6 233 7 237 239 171 38.0 1e-42 MLNIAHRGFKSRYPENTMLAFKKAVETGADGIEFDVHLSKDGEIVIIHDERLDRTTDKSG KIMDFSLDELKSANAANLYKDIEFEAIPTLREYFEYISDKKLITNIELKTGIYWYDGIEE KVYRMIREFDIQDKIIISSFNHNSVLKMKEIDKNIKCGLLVACWLNKPWEYVKKLGVEYY HPAAYAVDKEMVKGLHDNGIGINVWYGMEPYDFKTTFDLGVDALITDYPDVIKTFK >gi|289656186|gb|ADCS01000004.1| GENE 12 13008 - 13664 779 218 aa, chain - ## HITS:1 COG:CAC3658 KEGG:ns NR:ns ## COG: CAC3658 COG1285 # Protein_GI_number: 15896891 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Clostridium acetobutylicum # 3 137 2 141 229 154 55.0 9e-38 MTFELYFNIDLFLRVIVSCLCGLVIGYERENRNKFAGVRTHIIVALGSCLGMIISKYGFS DVSGFDPSRIASQVVSGIGFLGAGVIFVKNNSISGLTTAAGIWTTSIIGMTFGSGLYIMG LLGTFLIVIIQFLLYRNEYFKFKRKIYTVVVDCNSAEVIKNLRMYLSVNSIDYKALNIGY ADDSFKITLKYLSRNENESDEFMKFLGSESEIVKFKFL >gi|289656186|gb|ADCS01000004.1| GENE 13 13800 - 14369 836 189 aa, chain - ## HITS:1 COG:ygcP KEGG:ns NR:ns ## COG: ygcP COG1954 # Protein_GI_number: 16130675 # Func_class: K Transcription # Function: Glycerol-3-phosphate responsive antiterminator (mRNA-binding) # Organism: Escherichia coli K12 # 6 189 3 186 191 172 44.0 3e-43 MSGKKIIQCIEENPIILAVKNEEELRLALKEDAKIVFLLFGDLLNIADEVCKVKECGKYA IVHIDLIEGLSSKEVAVDFIKKYTKADGIISTRPKNIKRAKELSLFTVLRLFILDSIALQ NLEKNIETSKPDMVEILPGVIPKIIKKVTSENDTPVIAGGLISDKEDAMNALKSGAVAIS SSNPKVWRL >gi|289656186|gb|ADCS01000004.1| GENE 14 14459 - 15778 1375 439 aa, chain - ## HITS:1 COG:CAC0278 KEGG:ns NR:ns ## COG: CAC0278 COG0527 # Protein_GI_number: 15893570 # Func_class: E Amino acid transport and metabolism # Function: Aspartokinases # Organism: Clostridium acetobutylicum # 1 437 1 436 437 460 54.0 1e-129 MKIIVSKFGGTSLANSEQFLRVKEIINADSDRKYIVASAPGKSNSEDTKVTDLLYLCYDL AKHKINFNDILERVFNKYREIIDGCGIELDLSEYFEEINNNLINLNGKDYIASRGEFLNA LILSKLIGYDFVDAKELIFFDENGNFDEQKSYDAIYKMRDSHKCAVIPGFYGKMPNGDIR TFSRGGGDLTGSIISRGVKTNLYENWTDVTGFLSADPRIVKDPKEIKVITYKELRELSYA GASVLHEEAILPVTAAGIPIEIKNTFNPDAKGTLILPDGDVSENTFGEITGVTGRKHFSV INIEKVKLNSDKSFHRNLMSVLEVNGIVLEHMPTSIDSISLIVADKFLIGKQDTLLSEIK TFCNPDKISIKSGIALVTVVGRGMKNSIGVSAKLFKSLADGNINVQMIIQGSSELNIIVG IDVKDYEAAIESIYKAFMN >gi|289656186|gb|ADCS01000004.1| GENE 15 15912 - 16595 797 227 aa, chain + ## HITS:1 COG:AGl1259 KEGG:ns NR:ns ## COG: AGl1259 COG1802 # Protein_GI_number: 15890750 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 1 210 19 228 245 90 26.0 2e-18 MNGEIMATQKEKKSLSNGVYDYLKTKILNNELLPGDKLIEMEIAKELEVSRTPVREALAK LSKDGLAENFPRKSYIVSKISMKDARDLYSVRTALEPMAVREIAEEGITNRTVILENIIS KMTRAYENGDLETVKEQIIEWNISLINLTQNPILKDTLNIVNEKLYRFANFIFRDEKNVK DVYTEINAIFSAIKNLDGEGAYNISYKYVSGIYPMLETQSDYKMFRF >gi|289656186|gb|ADCS01000004.1| GENE 16 17061 - 17642 529 193 aa, chain - ## HITS:1 COG:Cj0620 KEGG:ns NR:ns ## COG: Cj0620 COG1451 # Protein_GI_number: 15791980 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase # Organism: Campylobacter jejuni # 42 193 70 215 215 82 35.0 6e-16 MEYEIIINKKNIKTLRVSATAEALLVSAPENMNREIIMNFIEKNKIQLEEMISLKRNMKY QNDIGNKIIYLFGKRLDEMLVENIDTEEKLELLYKKELLKILPMIFEKYNKLTGLMQREF KIRKMNARWGTCYPDRKLINLNLYLAKRPIDEIESVVLHELVHLKIANHSKKFYTEIKKY MPDYDEIHKKLNS >gi|289656186|gb|ADCS01000004.1| GENE 17 17644 - 19119 1580 491 aa, chain - ## HITS:1 COG:BS_ywnE KEGG:ns NR:ns ## COG: BS_ywnE COG1502 # Protein_GI_number: 16080712 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes # Organism: Bacillus subtilis # 16 491 7 482 482 423 44.0 1e-118 MFLKDYIETIIRFVELYGFIFIINIVFSLVIVFIEKRKPISTLLWVMTINFLPILGFLLY LILGQDLSRKRMFDKKGKAFKKMNQIAKVQLSMIKSGKISLKEKTKRYVEIIEMFNHGED EILYRNNEIVKFNNGKDMFESLFKDMRAAKNSIYLESYIFKSDNLGKKVMDLLVQKAKEG LEVILLVDGMGARGFKPGDRKKLIANGVKVEIFFPGIFKTINTRINFRNHRKIVVIDHKI GYVGGLNIGDEYVSENKKFGFWRDTHLRIAGDAVRGLQFRFFLDYRYASDRYDGGFISLL PEYLYREGADKEICIVTSGPDTKVNSIRNGYEKIITRAKKNIYIQTPYFVPDEGLLNALK VASLSGCQVNIMIPRKRDHFFVHWASLSFIGELLQWGAKAYFYEEGFLHTKVICCDDYIS SVGTANFDIRSFELNFEVNAFVFDAKLNRQLVEDFNRDVKKSTELTLSDYENRNIIIKVK EGISRLLSPVL >gi|289656186|gb|ADCS01000004.1| GENE 18 19130 - 20959 2185 609 aa, chain - ## HITS:1 COG:CAC1684 KEGG:ns NR:ns ## COG: CAC1684 COG1217 # Protein_GI_number: 15894961 # Func_class: T Signal transduction mechanisms # Function: Predicted membrane GTPase involved in stress response # Organism: Clostridium acetobutylicum # 5 606 6 605 605 718 63.0 0 MNKFREDVRNIAIIAHVDHGKTTLVDALLKQSGVFRENQVVEDRVMDSNDIERERGITIL SKNTSVKYGDVKINIIDTPGHADFGGEVERVLKMVNGVVLLVDAFEGPMPQTKFVLKKAF ELKLPVIVCVNKIDRPGARPEEVVDEVLDLFIDLGADENTLECPFVYTSAKQGIAMKNLG DSAENMNVLFDTVIDYIPAPAGDEDSPFQLLISTIDYNEYVGRIGVGKVERGVFKEGDSV VLTNAQAALEPKKVKISQIYEYEGLERVPVSIARAGSIVAVSGIEDINIGDTICSINDPT PLEFVKISEPTISMNFSVNDSPFAGKDGKFLTSRQIRSRLFRELQTDVSLRVEETSTTDS FKVSGRGELHLSVLIENMRREGYEFQVSKPQVLFKEENGKKLEPMEYVTIDVSSEFAGSV IEKLGRRKAELVAMQEPTGGYARLEFRMPARGLIGYRNEFLTDTKGNGILNSIFDGYELY KGDIPRRVDASIVSFDTGVASAYGLNNAQDRGLLFVEPGENVYEGQVVGQSPKGVEIEVS VTKTKKQSNVRASGSDEALKLSPKKSMSLEEALEFIEDDELIEVTPSTFRIRKQILNSQT RYKSKKYLK >gi|289656186|gb|ADCS01000004.1| GENE 19 21110 - 21508 414 132 aa, chain - ## HITS:1 COG:no KEGG:FMG_1043 NR:ns ## KEGG: FMG_1043 # Name: not_defined # Def: hypothetical protein # Organism: F.magna # Pathway: not_defined # 4 122 1 119 130 75 38.0 7e-13 MSALYRFNGSICSDLDELRIFLEDILYSLKKYICDEETIYDIRLILDELMVNGVLHGNKK DKCKCVCLEIVLHSDSITIRVSDEGCGVKFDFDSYDYNSLKCSGRGLILVRALTDDLVFN KNEIIVTKRVSL >gi|289656186|gb|ADCS01000004.1| GENE 20 21685 - 21849 339 54 aa, chain + ## HITS:1 COG:TM0659 KEGG:ns NR:ns ## COG: TM0659 COG1773 # Protein_GI_number: 15643424 # Func_class: C Energy production and conversion # Function: Rubredoxin # Organism: Thermotoga maritima # 1 53 1 53 53 70 73.0 1e-12 MQKYECTLCGYIYDPELGDEEGEIEAGTAFEDLPEDWECPLCGAGKEDFEPYED >gi|289656186|gb|ADCS01000004.1| GENE 21 21924 - 22370 514 148 aa, chain - ## HITS:1 COG:no KEGG:Elen_1414 NR:ns ## KEGG: Elen_1414 # Name: not_defined # Def: hypothetical protein # Organism: E.lenta # Pathway: not_defined # 9 139 6 138 158 98 47.0 6e-20 MKRCLKFGVKKRNLLAIAGVVWIIAGVNVARLGINAHKLIEKVSLINLLLSLIVFSAFSV MFYKMSLKHSRRIHSYEEDIKPFWYFFDLRSYGIMVFMMGGGIWLRSSGLVSSKFIAVFY TGIGLALIFAGISFLRIYFNYLDGNKQL >gi|289656186|gb|ADCS01000004.1| GENE 22 22354 - 22791 344 145 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0424_0946 NR:ns ## KEGG: HMPREF0424_0946 # Name: not_defined # Def: hypothetical protein # Organism: G.vaginalis # Pathway: not_defined # 1 134 5 137 147 114 50.0 8e-25 MKKYLNFSLIYAIIAMIGGIFYREVTKWNEFSGVTVLGKVHTHLFLLGMMLFLIVALFAE NNNLHEQKSFNIFIYVYNIGVAITVVMMVVRGVLQVLNILLSSKVDAAISGIAGIGHILV GVGIILLLVALKNSKRLKNLYEKMS >gi|289656186|gb|ADCS01000004.1| GENE 23 22788 - 23453 463 221 aa, chain - ## HITS:1 COG:no KEGG:Clos_0666 NR:ns ## KEGG: Clos_0666 # Name: not_defined # Def: hypothetical protein # Organism: A.oremlandii # Pathway: not_defined # 1 218 1 218 225 282 64.0 5e-75 MQAVFETIFDFIYLCTVIFLGVKMIRESNGKRQYLLYGIMAVVLGFGDAFHLVPRAVALC TAGLEEYTFALGVGKLITSVTMTLFYVLLYYVWRERYQITGRRELTITVWICAISRIILC LMPQNKWLSITPPLSWGIYRNIPFTILGVLIVVIFYQSAKQRNDYKFRFLWITIVLSFGF YIPVVLLSDSIPVVGILMIPKTCAYVWTVLIGYNSMKGELR >gi|289656186|gb|ADCS01000004.1| GENE 24 23531 - 24094 291 187 aa, chain - ## HITS:1 COG:no KEGG:Cphy_1856 NR:ns ## KEGG: Cphy_1856 # Name: not_defined # Def: TetR family transcriptional regulator # Organism: C.phytofermentans # Pathway: not_defined # 1 185 1 185 185 165 45.0 8e-40 MNTSVTSKEAILENCRKLVSEKGLSSLNMRTVAKNCEVALGSLYYYFPSKNDLLIATIES VWEDIFQLSDSGINNLSFPEYIDQCFKQIQLGIKKYPNFFTIHSISFSTKGQNRARDCME HYIAQIKEKMLCSLHSDKYVGKSIFSNEFTESDFIDFILSSVICLLVQKKKSCDTLLEVI KRTIYSH >gi|289656186|gb|ADCS01000004.1| GENE 25 24564 - 25820 1782 418 aa, chain - ## HITS:1 COG:BH3749 KEGG:ns NR:ns ## COG: BH3749 COG0766 # Protein_GI_number: 15616311 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine enolpyruvyl transferase # Organism: Bacillus halodurans # 1 416 1 417 440 436 57.0 1e-122 MEKIVVKKSPKLSGVVRVSGAKNAALPILAASILGTEDIILEDVPQLKDVEIMIEVLKSL GCVVNKAGKNKLVINSKNLSSYVTSYELMSKMRASFLVMGPLLGRMGKTVNSLPGGCNIG SRPIDLHLKGFEALGAEIENNVGDITASAEKLIGCRVYLDFPSVGATENIITAAVLAEGE TVIENAAMEPEIVDLANFLRKMGAAVMGAGTSTIRIKGVKELKGCSHQIIPDRIEAGTFM VAAAITGGDVIVDNVISSHMKPVIAKLEECGAKIIEEDDRIRVIGEDAIIPINIKTLPYP GFPTDMQAQFLALMTKLKGNNIAIETVFENRFMHADELVKMGADISVNNREAIVVGGKTL FGAKVRATDLRAGAALILAGLVAEGETEISDIYHIDRGYEDIEEKFRNLGAIIERIDD >gi|289656186|gb|ADCS01000004.1| GENE 26 25925 - 26308 397 127 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|114778902|ref|ZP_01453699.1| ribosomal protein L7/L12 [Mariprofundus ferrooxydans PV-1] # 1 126 1 126 127 157 66 9e-38 MSEKVQSLIEEIKGLTVLELSEVVKALEEEFGVSAAAPMAVAAAPAAGAAAPAAAEEKTE FNVVLKDAGAEKVKVIKVVKDATGLGLKEAKALVDGAPKAVKEGVAKEAAEELKAQLEAA GAVVEIA >gi|289656186|gb|ADCS01000004.1| GENE 27 26341 - 26880 433 179 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227902523|ref|ZP_04020328.1| ribosomal protein L10 [Finegoldia magna ATCC 53516] # 1 178 1 175 180 171 49 6e-42 MKEEKLQMKTQTVDEIKEKIEAAKSIVLVNYRGLNVEEVTELRTKYRAANVDYKVYKNTM MRRAFEELGFDGVLEFLKGPSAVAFSMEDPVSAAKISSEFAKDHEELEIKSGIVDGKVIT VKEIDDLAKLPPKEVLIAQVLGGLNAPIQGLVNVLNGNIRGLAVVLQAIADKKSNEATA >gi|289656186|gb|ADCS01000004.1| GENE 28 27439 - 28299 912 286 aa, chain - ## HITS:1 COG:FN0640 KEGG:ns NR:ns ## COG: FN0640 COG1266 # Protein_GI_number: 19703975 # Func_class: R General function prediction only # Function: Predicted metal-dependent membrane protease # Organism: Fusobacterium nucleatum # 63 275 69 280 293 143 38.0 3e-34 MYKLQKSKFRKTSNIRTLVVSTFVAAFIMLFMAGVFEVVSLSIFKSGNGYITIGSTVAMI LNVIVSAFVMCKISKIKFQDLGWHREGAIKEIFQGVVIGLAAISSVALLIFMLGGIKFEY IFTTKSISPMILGFIFFMFQGTFEELVMRSYLMPNFANVMGDKWSIIITSILFSVLHFAN PGITVIPIINLVLFGIVFAALYYKTGSLWVCGISHGVWNYTMAYVYGAEVSGALMGSAVL HSIPQAGKDFISGGKFGYEGGIVTTIVGIILIILIFKFYNEKEVSA >gi|289656186|gb|ADCS01000004.1| GENE 29 28799 - 29539 329 246 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 15 234 1 218 245 131 35 7e-30 MKLIYNRGCDIIETLISIKNLKRIYKMGNEKVFALNGIDLDIYKEEILCLLGTSGSGKST LLNMMAGLDKPTSGEIIVGGVHLEKLNETQITKFRQLNVGFVFQSYNLISTLNALENVSL GMIFKGVPIKQRNALSEDILTKVGLGDRLYHKPSEMSGGQQQRVSIARAFVDKPPIMFAD EPTGNLDTKTSFEIMNLMCQMARDYHQTLIIVTHDIETSVYADRIVDMRDGKIVSIKENQ PKIPKA >gi|289656186|gb|ADCS01000004.1| GENE 30 29557 - 31656 1820 699 aa, chain + ## HITS:1 COG:no KEGG:Amet_0367 NR:ns ## KEGG: Amet_0367 # Name: not_defined # Def: S-layer-like domain-containing protein # Organism: A.metalliredigens # Pathway: not_defined # 100 678 107 653 674 233 29.0 2e-59 MKRILSIFMALLILIGTVSEKTYATSVSNKLTVIADQTKEVGEGGYVVVGVNIKNNSNIP VKRVTAQAFIENPDKAYIDGDGYILSAGYNFNNSSDNIGNFRIRTDADFTTKTVPIKIEL RYYIEKTNEYVEQKETIYVRVVAPEKAVNPAIEISKVDSLWLNSVDAGREFQVPFEVKNT GDSVAKNIKVSLEGLESGKITLANGLSTADITRLNPGQSQFIYFNLKSSRSTPAGSYMLG LDYKFTGEKETSSPIEGKYKFSIDLLKSKITPSSLEFKNVSFPTGAIGRNQDAKISFDLV NTGKFVAENIKVTANSQDQTGLASKSVSQINHKSLKPNESAHFVFDFISTPSAETKNYPV EIKAVFSDESTDSSQEASQIVGVFVKAPKEKDPNAKDESPVPKLIIEEYSFDPQIIEAGK PFKMYLKLYNTNANKAVRNIKIFLTSDTQESATGNSSDSKGSSNSTASVFTPVGSSNTFY IDNINPGKRVDKEITLTTVPDTAAKTYTVVANFEYEDSKANKYTATEQIGVPVVQQAKLD VGEIIAQGDFSIGMETPLSVDFYNTGKATLYNVLIKITGDGVKFDTPTYYKGNFQPGSSD QFSVNVNPETDGKKKLTLTFTFEDSTGATQTITRDFDFTVEKMMIDENMPDDINNNVGSK NKITKIVGGIILLAAVIGTGVLIKKRRDKKKQEDEDLTL >gi|289656186|gb|ADCS01000004.1| GENE 31 31680 - 33011 1403 443 aa, chain + ## HITS:1 COG:BS_ytrF KEGG:ns NR:ns ## COG: BS_ytrF COG0577 # Protein_GI_number: 16080093 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Bacillus subtilis # 4 443 12 435 436 145 26.0 1e-34 MALKNLNSRKLRTALTVLGVVIGATSIIVMLSIGFGFQKINTDMYKSMGDLTTLDLHTDM FWSDEQEKEASKKKKTLNDQAINEIKRIPHVIAIMPMYKASAVFTSGRFSNNGVDIVAIP ADAMEKFGFKIGEGRLLNSQDNSGGVVMSFGCANENFRDDKRPYINSTGKIQALKSRIEI KQFQVQNSNNEYSGGSYFDEDGFERKSYVEKLKVVGVLEENPNDWSNYNTTYMTIEYFKK LKKASETVNGKTSALKAYSNIKVKVDDMENVDAVQKQIKDLGYNATNMYAEFLKQGNQQI VIIQAVFGAIGAISFLVAAIGITNTMIMSIYERTKEIGVMKVIGASIKDIEKLFLVEAGF IGLFGGFLGVISSLLLSALFNKLAEGFIMSEIGSANVDPKISYIPFWLILIALLFSTAIG VISGYLPARRAMKLSALEAIRSD >gi|289656186|gb|ADCS01000004.1| GENE 32 33193 - 33306 61 37 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MDIGKTKYTVNLHFKQDTGETYKDKILKLIKRETEKI >gi|289656186|gb|ADCS01000004.1| GENE 33 33478 - 33798 460 106 aa, chain - ## HITS:1 COG:SP0951 KEGG:ns NR:ns ## COG: SP0951 COG3070 # Protein_GI_number: 15900829 # Func_class: K Transcription # Function: Regulator of competence-specific genes # Organism: Streptococcus pneumoniae TIGR4 # 1 75 1 75 75 103 66.0 9e-23 MASSKEYLDFILEQLSELEEITYRSMMGEYIVYYRGKIVGGIYDDRFLVKPVKSAIAYMP NAKYELPYDGAKEMLLVDDVDNKEFLTGLFNSMYDELPAPKPKKKK >gi|289656186|gb|ADCS01000004.1| GENE 34 33820 - 34248 394 142 aa, chain - ## HITS:1 COG:FN0974 KEGG:ns NR:ns ## COG: FN0974 COG0346 # Protein_GI_number: 19704309 # Func_class: E Amino acid transport and metabolism # Function: Lactoylglutathione lyase and related lyases # Organism: Fusobacterium nucleatum # 1 142 1 142 142 244 80.0 4e-65 MNKITCICLGVKDMERSIKFYRDGLGYKTDCKENNPSVCFFDTPGTKFELFPLKQLAKDI DENNPPKGNGFSGITLAYNVEHKEDVDSVIELVRSAGGRIVKEPQNTFWGGYHAYFSDLD GYYWEVAWGPNFKFDENGLLKF >gi|289656186|gb|ADCS01000004.1| GENE 35 34305 - 34496 224 63 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|283769192|ref|ZP_06342096.1| ## NR: gi|283769192|ref|ZP_06342096.1| TnpX site-specific recombinase family protein [Bulleidia extructa W1219] # 1 63 494 556 556 112 90.0 6e-24 MIKKYTDIGELTVPMMNEYIEKVVVREAKGGRQGKDRKQQVDVYFNFIGNCQVPQKADIE KMA Prediction of potential genes in microbial genomes Time: Fri May 27 07:12:37 2011 Seq name: gi|289656185|gb|ADCS01000005.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.5, whole genome shotgun sequence Length of sequence - 21061 bp Number of predicted genes - 18, with homology - 18 Number of transcription units - 5, operones - 4 average op.length - 4.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 1 - 262 180 ## CLL_A2646 aminopeptidase II (EC:3.4.11.-) 2 1 Op 2 . - CDS 347 - 538 154 ## gi|283769192|ref|ZP_06342096.1| TnpX site-specific recombinase family protein - Prom 628 - 687 3.2 3 2 Tu 1 . - CDS 791 - 1168 337 ## CKR_2861 hypothetical protein - Prom 1209 - 1268 4.2 - Term 1239 - 1268 2.1 4 3 Op 1 1/0.000 - CDS 1283 - 2389 1383 ## COG0760 Parvulin-like peptidyl-prolyl isomerase 5 3 Op 2 7/0.000 - CDS 2436 - 5921 3442 ## COG1197 Transcription-repair coupling factor (superfamily II helicase) - Term 5936 - 5968 4.0 6 3 Op 3 1/0.000 - CDS 5973 - 6545 624 ## COG0193 Peptidyl-tRNA hydrolase 7 3 Op 4 11/0.000 - CDS 6550 - 7506 1041 ## COG0462 Phosphoribosylpyrophosphate synthetase 8 3 Op 5 . - CDS 7524 - 8900 1939 ## COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) - Prom 9019 - 9078 16.0 - Term 9019 - 9075 1.1 9 4 Op 1 . - CDS 9139 - 9408 304 ## gi|299143248|ref|ZP_07036328.1| conserved hypothetical protein 10 4 Op 2 . - CDS 9474 - 11579 1874 ## GYMC10_2848 hypothetical protein 11 4 Op 3 7/0.000 - CDS 11617 - 12510 1095 ## COG1774 Uncharacterized homolog of PSP1 12 4 Op 4 2/0.000 - CDS 12510 - 13454 796 ## COG0470 ATPase involved in DNA replication 13 4 Op 5 . - CDS 13454 - 13738 407 ## COG3870 Uncharacterized protein conserved in bacteria 14 4 Op 6 4/0.000 - CDS 13747 - 14073 575 ## COG3870 Uncharacterized protein conserved in bacteria 15 4 Op 7 4/0.000 - CDS 14077 - 14688 741 ## COG0125 Thymidylate kinase 16 4 Op 8 . - CDS 14685 - 16064 1354 ## COG1982 Arginine/lysine/ornithine decarboxylases - Prom 16092 - 16151 7.7 17 5 Op 1 36/0.000 - CDS 16153 - 20187 4156 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 18 5 Op 2 . - CDS 20197 - 20898 316 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 - Prom 20975 - 21034 11.2 Predicted protein(s) >gi|289656185|gb|ADCS01000005.1| GENE 1 1 - 262 180 87 aa, chain - ## HITS:1 COG:no KEGG:CLL_A2646 NR:ns ## KEGG: CLL_A2646 # Name: not_defined # Def: aminopeptidase II (EC:3.4.11.-) # Organism: C.botulinum_B_Eklund # Pathway: not_defined # 9 77 10 78 409 69 44.0 4e-11 MLKIWKGQSNLIIREGLKIKKDDLLVIRGPVETYEFINLIAETAFEAGAKDVFVNYSDQN LAKIRYNNASIETLSDIPQYLLMNKMD >gi|289656185|gb|ADCS01000005.1| GENE 2 347 - 538 154 63 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|283769192|ref|ZP_06342096.1| ## NR: gi|283769192|ref|ZP_06342096.1| TnpX site-specific recombinase family protein [Bulleidia extructa W1219] # 1 63 494 556 556 112 90.0 6e-24 MIKKYTDIGELTVPMMNEYIEKVVVREAKGGRQGKDRKQQVDVYFNFIGNCQVPQKADIE KMA >gi|289656185|gb|ADCS01000005.1| GENE 3 791 - 1168 337 125 aa, chain - ## HITS:1 COG:no KEGG:CKR_2861 NR:ns ## KEGG: CKR_2861 # Name: not_defined # Def: hypothetical protein # Organism: C.kluyveri_NBRC # Pathway: not_defined # 5 120 297 407 550 84 38.0 2e-15 MSNTKRTGQAIIDEETWNNAQRLRKTVRRSPKYGTTSHSFTGLLICSDCGRKLSYREPAE HKEKKYDSDYSFVCQHYRHRKGTCSMHYIKVKTVNEILLKSIKEITDFAKEDKQEFLNMM NKLSD >gi|289656185|gb|ADCS01000005.1| GENE 4 1283 - 2389 1383 368 aa, chain - ## HITS:1 COG:BH1177 KEGG:ns NR:ns ## COG: BH1177 COG0760 # Protein_GI_number: 15613740 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Parvulin-like peptidyl-prolyl isomerase # Organism: Bacillus halodurans # 90 299 55 265 333 109 35.0 8e-24 MILKFLKNKQLNKKIVAVSLGALMFVTACGKKGPEGVVATVNGTDLTEKDYVMQYAAQRN QYVLTAGSEDVLSQPSADNPKKTVDQAIKENTLKNMIQMELVKQDAAKSNIAVDQSKVDE EIKAIITQMGGEEIYKQKLEALGSTPEFYKSYLTELQLMKSYYETKIKEFEPTDEEIQKY YDKNKDNFFKAKASHILVETVEEANKLKKELNKGADFAEMAKENSKDPGSAANGGSLGEF KNGDMVAEFNDVVKILKVGEISDPVKSKFGYHIVKVDEKSARTLDEVKEELKQQLTQAKF TDYIEKMQKDAKISEYLDATKEIQIPEEYQLKNVPGKDAEQKTEGNAAKEGNKKDEAADA EKKNESKN >gi|289656185|gb|ADCS01000005.1| GENE 5 2436 - 5921 3442 1161 aa, chain - ## HITS:1 COG:CAC3216 KEGG:ns NR:ns ## COG: CAC3216 COG1197 # Protein_GI_number: 15896463 # Func_class: L Replication, recombination and repair; K Transcription # Function: Transcription-repair coupling factor (superfamily II helicase) # Organism: Clostridium acetobutylicum # 1 1155 3 1161 1171 926 45.0 0 MNFLIDSVKNMSGFKDILSSIKNDITPIGVYGITDGQIGHMAFSILSEIKKPILIIAPDN LKARKIYEDLLNLGIKDCDLYPKREIFLYDRDSKSLDNIKIRIRAMQNLAMNRNRVLVAT TEALRDKIADREVFKKYILNITCSDELDIKLLEKNLITMGYERRSQVEGVGQFAIRGAII DIYTPISPYRIELFDVEVDSIRSFDIATQRSIENLTDVEIGPVSDFLLLDEYRQTILKNL NAELKKSKLSGNYRERLNEKFSKYINSLTENLTIANMDLIMPFVEEEKLNSIIDYYNEQP IILIDEPNRCIDRARVLEVEQKDNLSEQINFGEALKAHEKVQFDLNKTILKIKELSIITL NTLTVESKEFSPRVIVNFRMKSITNYRGKMKLFVDDLKDYTYRGYKVVILAGNDNKAKRL CNTLIDFGLTVRYEEHFEAQIKSSEIIVTTGTLHDGFEISDIKFVIINYSEIYGLKEVKR KPKKKNKVINFEDLNIGDYVVHEVHGIGKYIGTKRLEVQNVKKDYIVIEYKGEDKLFLPI ESLNLIYKYVGSEGKAPKVNKLNSLEWSKTKSKAKKSVEDMAEDLIKLYAKRQEVKGFAF SEDTQWQREFEDAFEYEETQGQLESSEEIKNDMQSDKPMDRLLCADVGYGKTEVAIRAAF KAIMDGKQVAFLVPTTILAQQHYNTMIERFKDFPVKIALLCRFRSKMQQKKDLEDLKKGF VDIIIGTHRILSKDVVFKDLGLLVIDEEQRFGVRHKEKLKILKENVDTLTLTATPIPRTL QMSMVGIRDMSVIEEPPEERFPVQTYVLEYNDMMIREAILKEIERGGQVYFVYNKVANIE NKLIELRNLVPEAKFNIAHGQMSEQLLEDTMISFINHEFDVLLCSTIIETGMDIQNANTI IVSDANRLGLSQLYQLRGRIGRSNKIAYAYFTYGRDISLSEIAQKRLKSIKEFTEFGSGY KIALRDLEIRGSGSILGSRQHGHIDSIGYDLYIKYLRDTLSKMKGEEVKEEDDTTIDVKV DSYIPASYIEDENNRIEIYKKIATIESDDDYSDLVDELIDRFSDIPYQVSNLMDISLIRY MAREVGVKSITQKKDEYEFKLSYLPNLELINELSDSFKKISFNLGSEPGFTVNNLKYPLD ELKRAIEIIKLHKKLTPNTEN >gi|289656185|gb|ADCS01000005.1| GENE 6 5973 - 6545 624 190 aa, chain - ## HITS:1 COG:CAC3217 KEGG:ns NR:ns ## COG: CAC3217 COG0193 # Protein_GI_number: 15896464 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Peptidyl-tRNA hydrolase # Organism: Clostridium acetobutylicum # 1 185 1 183 187 172 46.0 3e-43 MYIVAGLGNPGRQYENTRHNMGFLAIDELARKLNVNVNRIKFKGLVGETNIAGEKVYLVK PQTYMNNSGQCIYEICNFYKVNPKNLIVIVDDIDIEFSSLKIKKKGSAGTHNGLKSIIYM LQSDEFPRIKIGVGKQGQNEDLADFVLSGFSKSEQTEMNNTIENAAQSVIEIIENGIESA MNKYNKKMSK >gi|289656185|gb|ADCS01000005.1| GENE 7 6550 - 7506 1041 318 aa, chain - ## HITS:1 COG:FN1992 KEGG:ns NR:ns ## COG: FN1992 COG0462 # Protein_GI_number: 19705288 # Func_class: F Nucleotide transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoribosylpyrophosphate synthetase # Organism: Fusobacterium nucleatum # 10 316 9 316 316 378 60.0 1e-105 MNSCGGEIIVFTGNSNHSLVDRICDELGIKKGKCEVKTFSDGEIAIDIAETVRGKDVYVI QSTSNPVNNNLMEILILIDALKRASAGRINAVIPYYGYARQDRKTKAREPITSKLVADLV TVAGADRVVAMDLHAGQIQGYFNIPVDHLTAVPYLARYFKDIVKKEDFVVVSPDLGGVTR TRKFANELNLPIAIIEKRRPKPNVSEVMNIIGDIKGKNCILVDDIVDTAGTICQAAEALK KKGAKKVYGCATHGVLSGPAIERLSGSVMEKFIITDTIELKEEQKVEKLEVVSVAPLFAS AIKRINSNTSISEMFDNR >gi|289656185|gb|ADCS01000005.1| GENE 8 7524 - 8900 1939 458 aa, chain - ## HITS:1 COG:CAC3222 KEGG:ns NR:ns ## COG: CAC3222 COG1207 # Protein_GI_number: 15896469 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) # Organism: Clostridium acetobutylicum # 2 457 3 454 456 418 49.0 1e-116 MKVSVILAAGEGTRMKSKLPKVLHKILGVPMLGYVINSAKESNVEKISVIVGHGKEKIRE CFDERDIVFRTQPVGDEFPYGTGYAVMQALDDFDDEDTVLILNGDTPLIKSETLDGLLQY HEQGNFSCTILTAELENPFGYGRIVRDDAAKIYKIVEQKDASEKEKLIREINSGIFAFNG GDLKEAIKTLDTNNSQGELYLTDVVSAIFNSHKRIGGYKLKDNCEILGVNSRDGLAVCTD IMKKRINKQYMLDGVTMIDSNSVIIEPTVNIGRDTVIYPGAVLQGNTTIGENCTIYGNTR IVDSVISDNVVIDNALIESSSVGENTTVGPFAHLRPNANIGSNARIGNFVEVKNSKFGNG SKAGHLAYIGDADVGEKVNIGCGVVFVNYDGKNKHRTIVGDNGFIGSNANLVAPVIVEDY GYVAAGSTITKKVCEGQLAVERAKQTNIDGWVDKKGLK >gi|289656185|gb|ADCS01000005.1| GENE 9 9139 - 9408 304 89 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|299143248|ref|ZP_07036328.1| ## NR: gi|299143248|ref|ZP_07036328.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 89 3 91 91 158 100.0 9e-38 MRTLLINQFDFQTDDTEHKVFFMIGNMDTVRELLLDNFNSLESKYYGKGMLKYNGLRLYI TIKEIPEVIKMLVGLGVNIYGIYELYEPK >gi|289656185|gb|ADCS01000005.1| GENE 10 9474 - 11579 1874 701 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_2848 NR:ns ## KEGG: GYMC10_2848 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 194 668 221 717 752 238 31.0 5e-61 MKIDNIVIKIYSKFKNLLLNKFGNTEKANIFIKLMIAGILSSQLYYYIADHGFSNILTFC LLTVGFYIVISVLVPIIKIAVTIFKRMGTKNIILFSLLYAVLYFVIDELSYDAFLDDWHV YTFPLIIAAILFVLFKSFIAVVLNKKKLPILLLVPSIALIGFSVFTLLFFNKSSTDSAMK IAETGTKKLDGNINYSAASYEYGQDLKDTVSLMKYVNYSGTTKKIRDKYFGRSLGAVPIK GKVWYPENKENSPVLFITHGNHRFTEQNYLGYDYLGKYLARRGIIVVSVDMNMLNGFLKY GVGKENDARAILLLENIKYVLKENKDSKSEYYNLIDESQVAIAGHSRGGEAVVAAQNFNV LEYNPDNGDKLDYNFNIKAVASIAPTEGQYNPSNKALAMKDVNFFTIHGSHDKDVEGFDG MVLYNNVKFSEGSNNFKSAVYVGYANHGQFNEKWGSADADPPYSLFVNTPALISEESQQE IICEYMYSFLANSFGFINDRGLFKNPYKYAMPKTFYYSRYSDDTFESICDFEEDYDLTTF KYGTSKFNGFNSMYESDKKIGNSSSDTCLNLRYSGSGDYELLFDTAPKVKKYLQVDIANE EKLELYNKVNFKIRLTDKYGNESEVNISDYITLYPKVKVEKSKLQFISNEYDYNGSYQTL RIPISDFKTKSKINLNEIRYLNFIFKGESGKISIDNIGFSD >gi|289656185|gb|ADCS01000005.1| GENE 11 11617 - 12510 1095 297 aa, chain - ## HITS:1 COG:CAC0301 KEGG:ns NR:ns ## COG: CAC0301 COG1774 # Protein_GI_number: 15893593 # Func_class: S Function unknown # Function: Uncharacterized homolog of PSP1 # Organism: Clostridium acetobutylicum # 1 294 1 299 303 309 57.0 5e-84 MIDVVGVRFKKTGKIYYFDPNSTGAEISDYVIVETIRGLEYGKVVVSKQIDESEIFSELK PVIRIATIEDESKNIDNRNKAKEALIICEQQCQKHNLDMHLTGCEYTFDNSKLLFYFTAD GRIDFRDLVKDLASVFRTRIELRQIGVRDEAKTVGGLGCCGRACCCSAFLSEFTPVSIKM AKDQNLSLNPTKISGVCGRLMCCLKYEQDGYECILKKIPRVGEIVETDRGKGTVVSSYTI QELVKVIFTDGDSSEYALYGMDDVKRTKKFNKDFETYSSNLYEEEAKPEELKELERE >gi|289656185|gb|ADCS01000005.1| GENE 12 12510 - 13454 796 314 aa, chain - ## HITS:1 COG:BS_holB KEGG:ns NR:ns ## COG: BS_holB COG0470 # Protein_GI_number: 16077099 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA replication # Organism: Bacillus subtilis # 10 311 14 326 329 108 29.0 2e-23 MLIDFVGNSKVLQELEQNIINRDISHAYLFFGSEGVGKYTAAKAFAKRILCGEDTISCKK IFDFSHPDLRIIRSEDTINKEDIERLILDAAKMPYESENKVFIVDGFDEFTIGAQNALLK TLEEPQYYLKIILIAKNINKILPTIISRTRIIKFKDVSNEEIEKFLINKEGIDEKNAHLF SRISVGSVKRAIRYSNDPKFLALRDKSIETLDRIINLKAFPFREYSFFKENEKEIKEIFN IFIIFLRDVALLKQGIDVEYVINIDKLIFLNKQTISSSDAISMVDEIINTSRLLSSNTNF ELTIEKMLIKIGGI >gi|289656185|gb|ADCS01000005.1| GENE 13 13454 - 13738 407 94 aa, chain - ## HITS:1 COG:CAC0299 KEGG:ns NR:ns ## COG: CAC0299 COG3870 # Protein_GI_number: 15893591 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 1 94 1 109 109 68 36.0 3e-12 MKMIIAIVQDKFINDLMDRFLDDGIYVTKVSSTGGFFKSGNTTLLLGAEESEIPHIDSIF REVTKTEELHNEYGDFKISGATIFIVNVEESLRI >gi|289656185|gb|ADCS01000005.1| GENE 14 13747 - 14073 575 108 aa, chain - ## HITS:1 COG:BH0043 KEGG:ns NR:ns ## COG: BH0043 COG3870 # Protein_GI_number: 15612606 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 1 108 1 109 109 112 49.0 2e-25 MKLVIAIVQDVDADHLIEELTKNNFRVTKMSTTGGFLKSGNTTLLIGVDDSEVEALLKLI TNNCKTREVTKIIQTINIPGQAMIPVPIQVRVGGATAFVLNVEEFKRY >gi|289656185|gb|ADCS01000005.1| GENE 15 14077 - 14688 741 203 aa, chain - ## HITS:1 COG:L3846 KEGG:ns NR:ns ## COG: L3846 COG0125 # Protein_GI_number: 15672380 # Func_class: F Nucleotide transport and metabolism # Function: Thymidylate kinase # Organism: Lactococcus lactis # 1 201 1 207 211 161 40.0 8e-40 MRGIFVTFEGPDGCGKSTIANLVYEKLKAEYDVVKTREPGGTKISEKIRNIILDNENIEM TSRTEALLYAASRAQHVEEKILPALKNGSIVLCERFVLSSIAYQGFGRGLGRESIENINK FATGEVEPDVVFLFDTGNISSENRKLEFGGDRIEICGNEFHSRVKEAYRELAKEKKYCVI DATRGIEEVLNDCLDILYKKLEG >gi|289656185|gb|ADCS01000005.1| GENE 16 14685 - 16064 1354 459 aa, chain - ## HITS:1 COG:CAC2338 KEGG:ns NR:ns ## COG: CAC2338 COG1982 # Protein_GI_number: 15895605 # Func_class: E Amino acid transport and metabolism # Function: Arginine/lysine/ornithine decarboxylases # Organism: Clostridium acetobutylicum # 2 458 8 483 487 280 35.0 5e-75 MERHIFNVVQRMKDKVVFSMPGHKSKDIFDFDYKNDITETVGTDNLLNPNGCILKSQQEI AEIYGVKRTYYVENGSTGALNIAISAVTNPNDHVLIQRNCHKSVYNSLVINDLVPSYVYA NYNNKYNLITGIDPEDIRRQLEKDPMIKAVVLVSPNYFGVCLKLKEIADIVHKFNAYLIV DEAHGSHMAFSEKLREYSAINCGADIIVHSTHKTIPSLTQTALLHVNNDEISHRKIINRM NLVSSTSPSYLLMQSSEFAVSYMQEHGAKRLAENSEFIKKMKENLKGQVKFFDGDKNDDT IACVDDSKILMRIDGYTGFDVVKKLFMSYNIRLEMGDLYYVLALSSVVDEKDDFKILESA LKNLYKNIDEICEVKSINIIKPGLITTPRKAYYSASEEVDIKDAIGRVSASIIAAYPPGI PVVSYGELITEKIVEEILNYENVGIEVVGIADNKVEVIL >gi|289656185|gb|ADCS01000005.1| GENE 17 16153 - 20187 4156 1344 aa, chain - ## HITS:1 COG:lin1187 KEGG:ns NR:ns ## COG: lin1187 COG0577 # Protein_GI_number: 16800256 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Listeria innocua # 407 1344 263 1136 1136 431 32.0 1e-120 MNLLNKDTLREIVRTFSRYLSIIIIVALGVFVFVGLIVTGSIMRYTIDKVVDRQNIEDIL IKSPLGFEDEDIKIIESQDDISELEYGYDTDLSVKGKNLLINVSSMPYKIDMPIIVKGRA VNGNREIILNEKLEEKGISIGDTIHFQREINKFSMEDDKKPYLKDYDYVVTGFFKSANYA SNQDSKGQSNRGLGDIKGLAYINSDEFDIDVTTAKIKFKDTVGLLTSSNKYKKAVESHRN SLEIDFKYRPDNRLEDLKSDISDEIFKGEDKIADAKEKLSDAKTKLEDGRKKLEEGKSEY KKGRAEFDSETSKAKDKLDDAKNKLYKSEQDIKKGETELAEGYDKLVEGKNELDDAKREI ADGEEKYISGKAEYDEGLGKLKASETQLIEGEQQLIEGRKKLDDGWKKIEESKLKIEEGK KELSENEKKLIYAEKELNDGIKKLADSVGLNTTDLSQIREKIYSLDAALGQAKQVIDGYN QVIAGISTAQENITTLNAQKVQIEEGIAQIVLALEDPSLTEEQKAELNAKKAVLEQNLAQ VIAGIETATQMLTSLEGKKVELEAAISKINAQLPAGTDILKDYDTLKAQIGLAKAGILKI EESKGKLETAKIKLEAGKEKLAEGEKQLFSGIEQANKGEQEYFENKNKLEDGKRKYIEGK QKLDDAKVKLDDAKIKLEDGKKEYEDGKKKYDENYAKYIEGKSDLENGRERFKDGKKDYE EGLKNYNDEVKKGQDKFNNAKSKLYKSEVDLKKGEREFIDKSKEADEKIFDGEKKISDAK RILKILKRPSYSITPRTSNFDLNMYLDFSRRVDKLSCIFPVFFFLISMLVSFNTMTRMVE DNRTIIGTYKALGYTEREISKKFFNYGASASILGGSIGAGLGSYILPMIIGGAYYAGSVF ENEIIYKIYPFRILLSIITGLLFTAVAAKISVNASLRENTASLLRVKPPKNGNRILFERL TFIWSKLDFLQKVTARNLFRYKKRMVMTIIGIMGCTALLVLGFGIKGSVRGIANIQFDEV LKYNLSVIYDRDIDENSYDEYRRFVDKNNIESGQFYQENLKIEYKGTNQAVLLTVPSSDK VYDKYFSIRDRVTKEPIELSDNGVVVSEKFAKIFNLKIGDILKLNDDEDREYKMMVSGIC EMYTGHYIFMNIEYYEKIFGREYAPNSDLMNLKMNNDEIDKLSSEFSSYKSVISVMDLSV VKNLMDRFMYSISKVEVVITVASSLLAMVVLYNLTNINIEERLREISTIKVLGFYARETT QYIYRETWILTVIGIVIGLFVGKALHYGVLQVVPPDQAMLSPKLLVSSYIIASMITVIVS ILIMVIFHEKLKNIDMIESLKSNE >gi|289656185|gb|ADCS01000005.1| GENE 18 20197 - 20898 316 233 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 4 216 2 217 245 126 34 1e-28 MAFIEVRNLYKRYTMGETVILANNDISFEIEKGEFALILGPSGAGKSTLLNILGGMDTPS EGSIKVDNKEISNMNKRELTTYRRYDMGFVFQFYNLIPNLTALENVELANQIVKNARNSK EVLESVGLGDRINNFPSQLSGGEQQRVAIARAISKNPKILLCDEPTGALDYRTGKQVLKI LQNLSRDMGTTVVVITHNKAIAPIANRVIEISDAKVRSISLNDSPCSIDEIEW Prediction of potential genes in microbial genomes Time: Fri May 27 07:13:01 2011 Seq name: gi|289656184|gb|ADCS01000006.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.6, whole genome shotgun sequence Length of sequence - 9157 bp Number of predicted genes - 8, with homology - 8 Number of transcription units - 2, operones - 2 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 2/0.000 - CDS 57 - 1469 723 ## PROTEIN SUPPORTED gi|145629959|ref|ZP_01785741.1| 50S ribosomal protein L21 2 1 Op 2 . - CDS 1485 - 2408 1083 ## COG2066 Glutaminase 3 1 Op 3 . - CDS 2408 - 4468 2227 ## COG3829 Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains - Prom 4683 - 4742 6.3 + Prom 4608 - 4667 10.3 4 2 Op 1 . + CDS 4694 - 5287 534 ## COG1131 ABC-type multidrug transport system, ATPase component 5 2 Op 2 . + CDS 5284 - 6753 1405 ## gi|299143262|ref|ZP_07036342.1| hypothetical protein HMPREF0629_00107 6 2 Op 3 . + CDS 6778 - 7854 541 ## gi|299143263|ref|ZP_07036343.1| conserved hypothetical protein 7 2 Op 4 . + CDS 7851 - 8849 629 ## gi|299143264|ref|ZP_07036344.1| conserved hypothetical protein 8 2 Op 5 . + CDS 8915 - 9121 370 ## gi|299143265|ref|ZP_07036345.1| copper-exporting ATPase Predicted protein(s) >gi|289656184|gb|ADCS01000006.1| GENE 1 57 - 1469 723 470 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|145629959|ref|ZP_01785741.1| 50S ribosomal protein L21 [Haemophilus influenzae 22.4-21] # 4 442 3 440 456 283 36 4e-76 MEFLSNIIGKLNGVLYYPILIILLLVIGLYFTVKTGLIQFKYLSETFKVVMEKPNKEGSV SSFQALMVSTASRVGTGNIVGVSTALCLGGYGAVFWMWVIAIIGGASAFVESTLAQIYKR QDSEGNYYGGPAYYIETALKNKALAIIFSVSLIATYALGFNMLAAFNLQTSFSSYSFYDA NITPKIIGGVLALITAYCIFGGGKRIIKFTSVLVPVMGVVYIAASIIMIILNIGNMPMVF GKIFSDAFDFKAIFSGIAGSSMMYGIKRGLYSNEAGIGSAPNAAASADVSHPVKQGLVQM LSVFIDTILICSATAFMGLSSGIEPNAEMSGAPYIQNALATRFGGMGFYFITFALILFAF TTLIGNLYYVDNNLAYINGKVPSKTFMTIYRIVAVLIIFVGATQEAGFLWDLGDLLMGIM ALINLPSILMLGGVTIKALKDYASQKSQGKNPVFVAKNIGVDEKEAPCWK >gi|289656184|gb|ADCS01000006.1| GENE 2 1485 - 2408 1083 307 aa, chain - ## HITS:1 COG:FN1397 KEGG:ns NR:ns ## COG: FN1397 COG2066 # Protein_GI_number: 19704729 # Func_class: E Amino acid transport and metabolism # Function: Glutaminase # Organism: Fusobacterium nucleatum # 10 306 5 304 304 231 42.0 2e-60 MDIKNLEARVDEVIKSTQNLIGVGNVATYIPELANVDADNFGLAVVTVDRERVLRGDTEL IFSMQSISKIISLIMALEDAGEEEVFSRVGTEATEYKFNSIRPIEDRAANPLINAGAITT ASLIRGKDVDERFNRVVEKVKILSNSDKVTFLETVYNSEMQTTDINRSIAYYLKSKNIFS EDTEDVLDLYIRNCSIGINIEGLATIAAVLANGGMSLDGKTQLISKKVVKITLALMAACG MYEESGKYLMEVGFPSKSGVSGGIIGIVPGKCGICTYSPRLDGSGNSVRGKKILEELSNS LDLNIFI >gi|289656184|gb|ADCS01000006.1| GENE 3 2408 - 4468 2227 686 aa, chain - ## HITS:1 COG:CAC0459 KEGG:ns NR:ns ## COG: CAC0459 COG3829 # Protein_GI_number: 15893750 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains # Organism: Clostridium acetobutylicum # 213 603 193 586 627 240 39.0 9e-63 MKRITILSIDEEASIFYKEQVNSIFKDVLVDYRNLEMEPVPPVKDTDLILYTDPEIINLL IKKINCDVPHLMMKRTITKAALKELNKIEADSKVLVVNINEFMANETMALIYQLGRTDIF MEPYFPGKILTSKEYDYIIHVAPEKMDLEDGITGKDIIIGHRILDVSNVLDIIYILNIEE KVARDIVLKMVNLVPTFWYGINYSLEQKYVSEAKLEFAIDYLDGGVLIVDSDFDINTING VMCKILGISKKDVLYKNLYEVFEREEEFLKIIRDQDVKEELIKVRNVECFITVRNIEYKS EIFGKMIILREYFNVVELYNKTNKIFKSGYFSKYTFDNIIGNSFNIKESIKIAKVYSKTE NPVLILGDTGTGKELFAGSIHNYSNRAKEPFVAINCSTLSATLLESELFGYEEGAFTGAK KGGKIGLFERANGGTLFLDEIGDLPMELQPRLLRALAEKKIMRVGGDKLIDVDVRIIAAT NKDINKMVVDGNFRMDLLYRLNAFEINISPLHERGKDTYLIINSYMKKKGITRNFTRDFE EFCINYNWPGNVRELKNILNYIEVMTKKEVGFDSIPKNLHLDRYLSKECEFALVLKLIYA LQILNRGPGRRTIEKLFTTIYYKISENEIRNILKYLEEKKFITTNVGRRGNEITCIGREY LLKERYILDYETEFIDKIEETIRSID >gi|289656184|gb|ADCS01000006.1| GENE 4 4694 - 5287 534 197 aa, chain + ## HITS:1 COG:AF1006 KEGG:ns NR:ns ## COG: AF1006 COG1131 # Protein_GI_number: 11498611 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Archaeoglobus fulgidus # 2 191 3 194 285 103 29.0 2e-22 MLMEISNLSASYGKNLILNSIYFTIEKGQSICILGENGCGKSTLLKSICGLKKYSGEIKY SDSLKIYYLPQDNVLIEDINVYDNIKLFLNNTSDIKNNKYIKLFEIDKIFKNKVSSLSGG TKKKVSLCLSLMEDNDLLILDEPFANLDSKNKSLFLDIFKTKKLNGLSILYTSHLNDMSA ASDIKLYLKDGKLEVMV >gi|289656184|gb|ADCS01000006.1| GENE 5 5284 - 6753 1405 489 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299143262|ref|ZP_07036342.1| ## NR: gi|299143262|ref|ZP_07036342.1| hypothetical protein HMPREF0629_00107 [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 489 1 489 489 816 100.0 0 MKKLKGAINSKLIIAVLAVLIVGGGIFAFTKGASGSKAEVAKALMGLKDEYSNTINDFAP DFGTKEMMQKYSKDGIFSADINLNTDYFKSQGIDSAGLTYSIKNNPKENLYSLTLDANGG SLSASADLTLIKNDVYLNIPMLYDNAFKIVGDTVGADIQDSALVKFLGADLSEYKDLKFD FTSLPRTTDELKKDFSNYIKTESNSLIKNLEVTKSSASDDETAKINNLLTDSSRKITPEK FELKFKADDIKAVMKKSSEYIVDLQKRELAAIGFNDESALEDISSSIKEAQEKIDEMKIA DPYIINVFIENGKVVAINTNISEEEKISAEIYFLGSKNTTDNMILNILEDDKEKTTISSN MSLSDSANIINVNVKSEYDEINYTETYNPTDKTLKVEGNFNEEVISLSGKFENIEKGKRY NFIFDNISIPGIEFNLGGNLNFSTETPEINAPENAIEILKLDESEIQSLMTKIEGNVQSF MIAVQQLGM >gi|289656184|gb|ADCS01000006.1| GENE 6 6778 - 7854 541 358 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299143263|ref|ZP_07036343.1| ## NR: gi|299143263|ref|ZP_07036343.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 358 1 358 358 493 100.0 1e-137 MKYFLLRLKSKFKILPILCAVMLIFMGSFYILKNNFKAKKINLSLHFEEQSNKNNLILFL VKGTASVKNAINVKLETNLENAFSDLKNGKTDILINVPENFYESIIDGTNKSATIYFSDS TEIVKGVFKSLSESSVKMLSSAQANIYISDNIKDGKQGYRNEELNKKLLSESLNREKLFK KVYIKSNVSMAEIYISILISSIIIIALRNTNYINTYAYLKVRGNSIFKLNLYEVVSNTII LFLIFIVSYNIANKPLNMLTDSIKILIISAFISALLELLLILFKESCIFAILIISILSIL NSGIIISRSIIPTYIIKAFSIMPISLILKDAPKSYILISAYTICFMLFTNYLIRRNFE >gi|289656184|gb|ADCS01000006.1| GENE 7 7851 - 8849 629 332 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299143264|ref|ZP_07036344.1| ## NR: gi|299143264|ref|ZP_07036344.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 332 1 332 332 481 100.0 1e-134 MKLLIFMKRYLKSKLFYLSLLCVFVLAFLYTTVDLNSSDNLKIGIIDKTDNCLSQNLIDK LLTSSGYFKYIKYSNEENLLQDLKSENINYGFEIDLNSDGKFIQYSFDDNFSGIAREDIY SNYFEITTSEYTKNLLKLDEQKYKTLYDKYIKQTFSFNYEDKFSGKVFPLFETSSLLILA LNTLTIYDYFILESNSKYFQTVNGRKNKSIFILAAILINSGLFLILLKHFIDIDIKKYLL YIICIYLYELLLIKLLSRKYFLIYMPLTILLSMISITAVNIKTSYSYLALLFLNNCYTKS QSSIIYLIIPLIILSVLNLTINLCHYRNDGNL >gi|289656184|gb|ADCS01000006.1| GENE 8 8915 - 9121 370 68 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299143265|ref|ZP_07036345.1| ## NR: gi|299143265|ref|ZP_07036345.1| copper-exporting ATPase [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 68 1 68 68 111 100.0 2e-23 MKKIINISNMTCEHCSAHVKEALENLNEVCDVKVSLFRKRAVVEGENLSDDILKNAVETA GYTVTSIE Prediction of potential genes in microbial genomes Time: Fri May 27 07:14:03 2011 Seq name: gi|289656183|gb|ADCS01000007.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.7, whole genome shotgun sequence Length of sequence - 54628 bp Number of predicted genes - 47, with homology - 46 Number of transcription units - 23, operones - 10 average op.length - 3.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 34/0.000 - CDS 17 - 742 282 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 2 1 Op 2 31/0.000 - CDS 751 - 1434 819 ## COG0765 ABC-type amino acid transport system, permease component 3 1 Op 3 . - CDS 1482 - 2324 1213 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain - Prom 2344 - 2403 10.9 + Prom 2625 - 2684 8.9 4 2 Tu 1 . + CDS 2731 - 3618 950 ## COG1284 Uncharacterized conserved protein + Term 3619 - 3671 8.2 - Term 3613 - 3650 7.3 5 3 Op 1 . - CDS 3657 - 5000 1786 ## COG0427 Acetyl-CoA hydrolase 6 3 Op 2 . - CDS 5056 - 7317 2305 ## COG2217 Cation transport ATPase 7 3 Op 3 . - CDS 7348 - 10458 3347 ## COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) 8 3 Op 4 . - CDS 10458 - 13172 2145 ## FMG_0603 putative ATP-dependent exonuclease 9 3 Op 5 . - CDS 13160 - 14149 818 ## COG0564 Pseudouridylate synthases, 23S RNA-specific - Prom 14180 - 14239 8.1 + Prom 14132 - 14191 10.7 10 4 Tu 1 . + CDS 14221 - 14901 539 ## gi|299143273|ref|ZP_07036353.1| conserved hypothetical protein - Term 14885 - 14936 12.8 11 5 Tu 1 . - CDS 14944 - 16692 227 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 - Prom 16888 - 16947 5.7 + Prom 16603 - 16662 10.0 12 6 Tu 1 . + CDS 16808 - 18382 448 ## PROTEIN SUPPORTED gi|145628098|ref|ZP_01783899.1| 30S ribosomal protein S20 + Term 18465 - 18502 4.0 - Term 18607 - 18642 6.4 13 7 Tu 1 . - CDS 18649 - 19650 1300 ## COG3584 Uncharacterized protein conserved in bacteria - Prom 19717 - 19776 10.6 14 8 Op 1 . - CDS 19879 - 20499 601 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 15 8 Op 2 . - CDS 20496 - 21641 1227 ## Tmath_1583 patatin - Prom 21663 - 21722 3.2 16 9 Op 1 . - CDS 21749 - 22180 613 ## COG2131 Deoxycytidylate deaminase 17 9 Op 2 . - CDS 22188 - 22781 642 ## COG3341 Predicted double-stranded RNA/RNA-DNA hybrid binding protein - Prom 22818 - 22877 8.4 + Prom 22762 - 22821 8.7 18 10 Op 1 . + CDS 22922 - 23812 1205 ## COG3588 Fructose-1,6-bisphosphate aldolase + Term 23815 - 23854 1.1 19 10 Op 2 . + CDS 23859 - 25127 1171 ## COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase + Term 25137 - 25181 10.1 - Term 25130 - 25162 4.0 20 11 Op 1 . - CDS 25166 - 25999 558 ## COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain 21 11 Op 2 . - CDS 25996 - 26364 510 ## Amet_0292 hypothetical protein 22 11 Op 3 . - CDS 26377 - 27096 868 ## gi|299143285|ref|ZP_07036365.1| putative single-stranded-DNA-specific exonuclease 23 11 Op 4 . - CDS 27086 - 27934 910 ## COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase - Term 27979 - 28006 0.1 24 11 Op 5 . - CDS 28009 - 28272 316 ## gi|299143287|ref|ZP_07036367.1| protein veg - Prom 28304 - 28363 7.7 - Term 28283 - 28327 -0.9 25 12 Tu 1 . - CDS 28390 - 29994 1547 ## gi|299143288|ref|ZP_07036368.1| hypothetical protein HMPREF0629_00134 - Prom 30025 - 30084 9.5 - Term 30049 - 30085 3.3 26 13 Op 1 10/0.000 - CDS 30104 - 30565 706 ## COG0691 tmRNA-binding protein 27 13 Op 2 . - CDS 30549 - 32648 1614 ## PROTEIN SUPPORTED gi|15894003|ref|NP_347352.1| fused ribonuclease/ribosomal protein S1 28 13 Op 3 6/0.000 - CDS 32648 - 33817 1113 ## COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes 29 13 Op 4 3/0.125 - CDS 33827 - 35362 1457 ## COG0770 UDP-N-acetylmuramyl pentapeptide synthase 30 13 Op 5 . - CDS 35371 - 36138 906 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) 31 13 Op 6 . - CDS 36154 - 36513 510 ## gi|299143294|ref|ZP_07036374.1| conserved hypothetical protein - Prom 36533 - 36592 6.2 + Prom 36466 - 36525 7.9 32 14 Tu 1 . + CDS 36625 - 36867 288 ## FMG_0518 hypothetical protein + Term 36981 - 37027 4.7 - Term 36972 - 37010 5.5 33 15 Op 1 . - CDS 37013 - 37711 970 ## COG1811 Uncharacterized membrane protein, possible Na+ channel or pump 34 15 Op 2 . - CDS 37716 - 38591 877 ## COG0122 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase 35 15 Op 3 . - CDS 38633 - 39274 805 ## COG2344 AT-rich DNA-binding protein - Prom 39297 - 39356 8.1 + Prom 39147 - 39206 7.3 36 16 Tu 1 . + CDS 39363 - 41249 1788 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains - Term 41621 - 41655 5.3 37 17 Tu 1 . - CDS 41672 - 43132 1906 ## Cthe_2424 copper amine oxidase-like protein - Prom 43210 - 43269 11.3 + Prom 43540 - 43599 12.3 38 18 Tu 1 . + CDS 43624 - 44337 779 ## gi|299143301|ref|ZP_07036381.1| conserved hypothetical protein + Term 44339 - 44382 10.3 - Term 44327 - 44370 6.5 39 19 Op 1 . - CDS 44377 - 45123 756 ## COG0778 Nitroreductase - Term 45134 - 45169 3.5 40 19 Op 2 . - CDS 45179 - 45535 442 ## COG2033 Desulfoferrodoxin - Prom 45579 - 45638 12.7 41 20 Tu 1 . - CDS 45642 - 47216 166 ## PROTEIN SUPPORTED gi|163764957|ref|ZP_02172007.1| ribosomal protein L10 - Prom 47242 - 47301 9.4 - Term 47276 - 47336 4.3 42 21 Tu 1 . - CDS 47338 - 48657 1877 ## COG2252 Permeases - Prom 48888 - 48947 10.1 + Prom 48654 - 48713 8.8 43 22 Tu 1 . + CDS 48923 - 51817 3317 ## COG1026 Predicted Zn-dependent peptidases, insulinase-like + Term 52012 - 52066 -0.8 - Term 51967 - 52009 6.5 44 23 Op 1 . - CDS 52061 - 52702 509 ## CDR20291_2961 hypothetical protein 45 23 Op 2 . - CDS 52769 - 54229 1313 ## COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member 46 23 Op 3 . - CDS 54309 - 54467 83 ## SDEG_1342 hypothetical protein 47 23 Op 4 . - CDS 54472 - 54627 203 ## Predicted protein(s) >gi|289656183|gb|ADCS01000007.1| GENE 1 17 - 742 282 241 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 1 229 1 226 305 113 30 3e-24 MAAILKIENLEKNFGNNKILKNISFTVDKGDVISIIGSSGSGKSTLLRCINQLEEVNGGT ILFKDKNILNGEISLRDLRTKIGMVFQSFNLYNNLNVLDNCTIGPRKVLKISRSDAEKTA ILNLTKVGMQQYVNAKPSQLSGGQKQRVAIARALCMNPDILLFDEPTSALDPEMVDEVLN IMKDLAKSGLTMIIVTHEMKFAREVSSKVIFVDKGIILESGSAEEIFENPKEARTREFLK K >gi|289656183|gb|ADCS01000007.1| GENE 2 751 - 1434 819 227 aa, chain - ## HITS:1 COG:SPy0277_2 KEGG:ns NR:ns ## COG: SPy0277_2 COG0765 # Protein_GI_number: 15674455 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Streptococcus pyogenes M1 GAS # 2 213 9 221 239 213 58.0 2e-55 MFLIGTVNTLKISILSTIIGLLIGLIVGGIRTIPKQKGLKGVMQKFVNLILSIYIQVFRG TPMIVQAMLLYYGLAQFYSIQIDKMLAAYIVVSVNTGAYMSEVVRGGIISIDKGQFEAAQ AGGMSHLQLMLYVIAPQTMRNILPATGNEFVINIKDTSVLNVISVGELFFAAKTVAGLSF DTFSTYFIILVIYLVLTSVITQILKFIEMRLEGPKSYELKMGNQIQV >gi|289656183|gb|ADCS01000007.1| GENE 3 1482 - 2324 1213 280 aa, chain - ## HITS:1 COG:SP0453_1 KEGG:ns NR:ns ## COG: SP0453_1 COG0834 # Protein_GI_number: 15900370 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Streptococcus pneumoniae TIGR4 # 29 278 20 266 325 228 47.0 8e-60 MKNLKGMTVLLIVMVFLTACGGNATSKTDVQEKENILRVGMECGYPPYNWTQQDDSNGAV EIEGSSEFAGGYDVELAKKVADALGKKLVVVKTEWDGLPPAVQSDKIDMIMAGMSPTAQR AEVIDFTEPYWVSDYVMIVRNDSKYVNATSISDFKDAKVTAQLNTVHYEIIDQIDGVLKQ EPMENFTQLRVALQSGVIDAYIGEVPEGKSVEAVMPDFKMVKFEDGNGFVVKDNENRIAA GLKKGNDELKTKANEVFSAITEEERQQIMDMAIKNQPAMN >gi|289656183|gb|ADCS01000007.1| GENE 4 2731 - 3618 950 295 aa, chain + ## HITS:1 COG:TM0177 KEGG:ns NR:ns ## COG: TM0177 COG1284 # Protein_GI_number: 15642951 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Thermotoga maritima # 15 288 5 277 283 179 38.0 4e-45 MESVNFKNMFSLYNIKKFIIVNIGVLILSIALHFFLVPSNLAVGGAAGLAILLASVFKFL SVSGTLLFINIFLIVLGFFTIGKEFGAYTIYASVALSAFLRIFEVFTPMKVPFTDDVFLN LVFGIFIQGIGVGLVLNKGASTGGTDIVAKIVEKYTRFSFGNGLVISDGIITLGACLIYG PKLGMYALMGVIMNSLIIDKMLAGFDSKYNITIISEKLEDINQFILVDLFRGSTIYVAEG GYSHKTKKILTTIVDRKDYILLREFVKRADSNAFMYISHITEVEGRGFTYEQKKK >gi|289656183|gb|ADCS01000007.1| GENE 5 3657 - 5000 1786 447 aa, chain - ## HITS:1 COG:AF1145 KEGG:ns NR:ns ## COG: AF1145 COG0427 # Protein_GI_number: 11498745 # Func_class: C Energy production and conversion # Function: Acetyl-CoA hydrolase # Organism: Archaeoglobus fulgidus # 1 440 7 462 482 297 40.0 4e-80 MDCKNIYKDKLISAAKAASFVKSGDYVDYAWGAQTPVAIDRELAKRAGELKDVVVRGGVL LWTPEIFKADPNGDSFIWYSWHSGGADRVRINTTDAGFYAPIRYSEVPRYYRENCKVDVA YITVTPMDEHGYFNMGLNASHMMAICETAKIVIVEVNEKLPVALGGFENTIHVSEVDYIV EGDNPEMAELPAGAFGDVDRKVAEIIVNEIPNGACIQLGIGGMPNAVGSLIAESDLKDLG VHTEMFVDAFVDLYNKGKITGAKKNIDRFRQTYAFAAGTKKLYDFIDNNPQCMAAPVDYT NDARVISKIDNFVSINNAVNVDLVGQVSSESSGKKHISGAGGQLDFVLGAYLSNGGKSFI CLSSKFYNKKTGKEESRIVPNFETGSAITVARPNTHYIVTEYGLFNCKGKSNWERAEGII NLAAPEFRDDLIKEAEKFGIWRNSNRR >gi|289656183|gb|ADCS01000007.1| GENE 6 5056 - 7317 2305 753 aa, chain - ## HITS:1 COG:CAC3655 KEGG:ns NR:ns ## COG: CAC3655 COG2217 # Protein_GI_number: 15896888 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Clostridium acetobutylicum # 7 751 78 813 818 627 47.0 1e-179 MKEKYTVTGMTCSACQNAVERSVKSLDVESVSVNLLSNTMNVEYDESKVSSDDILKAVKD AGYGVIVKGEKSNKYKNSKASDPYADEMKTMKGRLYTSLIFMIPLFYIAMGAMIGLPQPD ILKGYENLLILAISQMLLSIPVIAINFHFFKNGYKALFRRAPNMDSLIAIGSSASFVYGV YAIFKISYGMGHEDIQLVHKFAHDLYFESAAMILVLITLGKYFEAKAKKKTSSAINGLMN LTPKVATIEKNNVQIEIPVDEIEIGDIVIIKAGSNIPVDGIIISGSSTVDESALTGESIP VEKTVGDKIMAATTNKTGFIKFRATVNSENTTIAKIIELVEDANTTKAPIAKLADKISGK FVPIVIAISIITFITWFFVKGDFEFALSMGISVLVISCPCALGLATPVAIMVGTGIGAKL GILFKSAESLENLHNMNVALLDKTGTITTGEFEIKEIVSNRFSEEEFLRLAASIEKNSEH SLAKSIVKYALSRDLELTEPSNITTLAGMGIVAEIDGKNYLTGNEKLMEEEDIELDEYKT YTSKFTEEAQTSIYFADEDGIIGVISLSDTIKSSSSEAIEKLKKLGFEVCIVSGDNKKAA NVIGNRLRVDRVYSEVLPHDKEQIVREYIENGKKVLFVGDGINDAPSLARADIGVAIGAG TDIAIESADVVLIKNELLDLVGAIELSKATIKNIKQNLFWAFFYNTIGIPIAAGLLFNSF GLKLNPMIGAFAMGCSSLFVVTNALRLNKFRVD >gi|289656183|gb|ADCS01000007.1| GENE 7 7348 - 10458 3347 1036 aa, chain - ## HITS:1 COG:lin2368 KEGG:ns NR:ns ## COG: lin2368 COG1074 # Protein_GI_number: 16801431 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) # Organism: Listeria innocua # 11 761 21 895 1235 164 25.0 9e-40 MDRLNRIQNIAVNTIDKNICLSAGAGTGKTKVLTERFLNILKNGNLTKGYELEEILAITY TNKAAFEMKSKIKGALSKSKDNKLKDIYKFFSNAQIFTIHAFCGELIRKYPLAVEVDPEF EICEPLEAEDILRDATNTVLKKYENDMRLYELLMELSEIDIRKFSDAIISLYDDLKNKSY SIDEISFKNSEFLNEISKIKTDFSTLIYWIHELGNHKKLASNSKFRKLYAGDDIKKFFES PNFDFFEKIRSCVQDSKNKEIYEIMGKIRLEMLRLELVNEPKNQKYYELITDILKDIEIE YTFKKREKNYLDYEDLQKYALKILNSEIDIEYKYIMVDEFQDTNKIQTEILKKLTNNLSD NVNLFVVGDAKQSIYGFRGGDLSQYKKFVKEMESKDCISLDMNENYRSSSSLIESFNELF PKILGEEYTNLNANLKGDEKIKILEFCDDSKESVVAANYIDSLIKAGIDKKDIAILFRTA KNMESFESELISRNISVNNTAKKFSEFREIRDIIVLLKALSNNRDILNILAYFKSPLVGL SENSIFKLALRSKDTDILNFELEKELDDRDKELFNNGISKYFTLREYKNVLTLSEFIAMV VKELRCYEIFRMCFGKNSILNIDKLILLSNEFEKKSLNLEEFINYVQNVVLDGEKTEDAV TLMTIHKSKGLEFDHIILSDFKKNLLKKPTENIIKIGENGLGIKIKNRESKYYFIIEAEK LNELEEERRIFYVAATRAKKTLTFLSCKYKEKEDIEKGNENNVKNSYHELLKNTQFNNLK IISPSYEEVLRNSKPNIFEKLNMIGDFENNTLIRDEYFDRNKQFRYYSASGYMAFKKDPV SFYRTYILGDEIEYKPEGSEYEGIDPIKRGIIVHKYAQFCPSDIDEFLKRELEQNDIAVT NYVLDLLKDRIKNVDKSQRGTILHREYEFYYPVKNGIINGFIDQIREVNGDIEIIDFKTG HLTKESIEYYKLQLQIYTRAYESISGKHVKSAILISLADNTEHEIDISKTSVDNTIADFE KFIDFVETHDKIENYY >gi|289656183|gb|ADCS01000007.1| GENE 8 10458 - 13172 2145 904 aa, chain - ## HITS:1 COG:no KEGG:FMG_0603 NR:ns ## KEGG: FMG_0603 # Name: not_defined # Def: putative ATP-dependent exonuclease # Organism: F.magna # Pathway: not_defined # 27 852 28 831 893 85 23.0 1e-14 MEKLKVIYKANLYAENIEIKEKILEYIRNGKQVFYILPTKASIHQYKKMYIEELGGISNL KFHTFDSLRRENNNKKIIDDPFRSYILKDIIQKGNYKLFKNYRGIINSVSKFILRARENL VSSDMITANNSLFSELKDIYVKYEQFLSEKNLTDLIEHVDINDKNIDLIVIDGFYSFKEI ELGLIKDFSDRINVIVNVPFFLRDLNFAEKMVNSLERIGFETKLFLEDKSIQGYINDLVR NNRVFLIEEENRLSEFKTVFKFLKSCLIENEKCDLVSLSKDMKNLKQVEMFENLTLNEET IYSKYPIIEEFLSLIEYLRVQSRKNILSRIKLKYFEITDSDEMEYEISKMSFRNLDELVE NTRTSVELDEKNLIEFYELLKKLKVNFEGRESFKYYSEKLEEYLETAELVSERVYASTRD EIILKRDRQNIRSIKLLLDKLKNYDVYFKKVSFGLYIDFLNSYLEMIAFDNTNEYAPSVM SMDKSLYLRFNNVFITDFNLEFPSYPSRDFIFNKTNNNELINMGFVIESDRQIYDRELLK LLKLISLSKTAYLCYAREDDSSVYKDLFKKIKIASSVEISTVEQLSLEIIDEIEENKVDE NKIKLFNSFSNYNLLNEKIELENKRLLGNKEIILSGDALVSLRNLIDRRGFKVTDFDLYV KSPYTFLFERILKIEEMLRRQKDTYHIDIGNIYHHILERYFKKYPNELNETMLKAIIKSE LIDELPVSGKYTALDSAKVDGIFSILKNFIELDLSLRDDFIPVGFEVPINIKLDKYQING RIDRVDRKGDYKILIDYKKSNFGVPTQKDMANKEAFQFPIYIMAEDKCSIVEAKYGVIKS AEYKSALRDEKYFGRKMMKIENFEFFIDELKQEVIRLCNEIYNGNFTTESVDNEMYIDIF RQVK >gi|289656183|gb|ADCS01000007.1| GENE 9 13160 - 14149 818 329 aa, chain - ## HITS:1 COG:CAC1015 KEGG:ns NR:ns ## COG: CAC1015 COG0564 # Protein_GI_number: 15894302 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthases, 23S RNA-specific # Organism: Clostridium acetobutylicum # 2 321 1 316 318 197 37.0 2e-50 MIEIFVNENDEGQRIDRFLKKYFEKATLSFIYKNLRKKNIKLNDKKAEPEDLLSKGDCIK LYLSDETIEKFKREPINFKNNKFPKIIFEDENIILMNKPAGILSHNDSKDFKKNMVDMMI DYLIARQEYNPRNENSFRPAICNRLDRNTSGILIGAKKSGVLRSLNYEIKKNNIDKFYLA LVSGEAKEQFSDRSYLSKDGDRNKVTVLKKNSIGAKESITEFKRIAMQNDYSLLKVNLIT GRTHQIRTVLSSKKLPIVGDVKYGDSSVNRLFKNKYKYESQFLHNYSIHFNKIEGELSYL SGKTFYLVLPKLESDILEDIFGDRNIWKS >gi|289656183|gb|ADCS01000007.1| GENE 10 14221 - 14901 539 226 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299143273|ref|ZP_07036353.1| ## NR: gi|299143273|ref|ZP_07036353.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 226 1 226 226 396 100.0 1e-109 MKFFTNLTDFLLKIISVVVLLSIIIGLALVIRWKIDTLYMENIAGDEIEFTLLDEIEKTK LDIELYLNGDEPKSTPQIEIIKDKEEDLVSITIPEGASIDDIANELLNKKLMTSIPDFKA LVDSMGLTDKFICGTYQIPKDNKIKNTILTITNSTIKNYEITISEGAAADAVGAKLEKIG AIQSAKAFEEQCKDLNCFYKFKPGTYTIETPSKVIKIIEMLTGENF >gi|289656183|gb|ADCS01000007.1| GENE 11 14944 - 16692 227 582 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 286 563 213 507 563 92 27 6e-18 MKNIQLIKRISPYFKKYKSILFIDLLCAAFTTASEMILPLILRYISSVGMKDIKLLNVEL IIRLALLFLILKSIDLVAAYYMASIGHIMGAKIETDMRADVYAHLQTMSDSYYNETKIGV LMSRITNDLFDITEFAHHCPEEYFIGGIKILVSFIILLSVNLKMTIFIYLMIPIMVVFAS KYNHKMREAQKMQRVHIGDLNSSIEDSLLGIKVVKSFANEEIEAKKFNIQNAKFLGIKKK FYKAMAGFTVITKLFDGLMYLILIVSGGYFMMKGEIKPSDLIAYVMYVTSLLATVRRIVE FTEQFQKGMTGIERFYEIMDTKSEIEDSENAIELKDVKGKIEFRDVTFKYEKDTENVLEN FNLNINPGDNIAIVGPSGAGKTTICNLIPRFYDVSYGEILVDGENIKNVTLKSLRNNIGI VQQDVYLFSGTVMDNIRYGNPSATDDEVLRASELAGAREFIEQLPEKFDSYVGERGVKLS GGQKQRISIARVFLKNPPILILDEATSALDNKSEQIVQESLEKLTKGRTTLTIAHRLTTV QNADEILVMRDRKIIERGTHDELMKNQGYYFDLYTKGGLLEQ >gi|289656183|gb|ADCS01000007.1| GENE 12 16808 - 18382 448 524 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|145628098|ref|ZP_01783899.1| 30S ribosomal protein S20 [Haemophilus influenzae 22.1-21] # 4 508 2 517 524 177 27 1e-43 METTKKLARSTLAIIVFSLLGKILGFVRESLTAARFGATLEMDAFTASQSATATISMLIT AAIATIFIPSLQKAERELGEEEKLKFTNNMLMIISLISLIVIALGIVFAPALSILFTPKS KLEAYELVVKLIKIGMPVVIFSAVVGVFTGFLQYEGKFAAAGAVAIPLNLVYVIYLGFIS PHAGIVGLTIASVVGILAQVIFLLPDSFKAGYRPKFVFNLKDKYVNEALLLAVPILISTA VNDVNVIVNRRLAMGMVEGSASVLNYANKMNMMILGIFITAITAIIFPTMSRAFGNKDMI HGKRVMNASVKTVLFLTVPATIGMLILARPIVDVAFFHGKFTLQNAIDTTATLRFYTLAL ISISLSNVLNRVYYSIADTKTPFIIGLINVSINVGLNLLVAHKFGTRGLAASVSIATTVA VLISFILLREKIGNLGIKSYVKALVKTLMSSTAMGIFCLIYFPIEKVLTPLMHSHGSSII IKLLLLMIVVGIAAIIYGLCLYHLGVREIRDVVKIINRRLKKAS >gi|289656183|gb|ADCS01000007.1| GENE 13 18649 - 19650 1300 333 aa, chain - ## HITS:1 COG:CAC2988_2 KEGG:ns NR:ns ## COG: CAC2988_2 COG3584 # Protein_GI_number: 15896240 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 246 333 6 93 93 90 53.0 5e-18 MNLTQNSLRKKAATLLIGAVLLSSTITMGFSTVLGKSVNVIIKGEEKKFITYSATVEDFL KSEKIILKDKEVITPSLNTEIKDDMDIIIQAPKSYQINNGNEIYIAKAVGETVSEVLENL NIKVDSDDVVTPKLNAKASIEKPIVIERVFKESSEVKTEIPFETIKNENASLVVGETKII KKGKVGVKSEIIQNTFVNDKLVSIDVLKSEILEEPETEIVEIGTKKTAASATLEGKKIKK VITMQATAYDPTAGSLTALGTKARVGAVAVDPKVIPLGSKLYIETMDGWPSYGYAVAEDT GGAIKGNRIDLFFNSNATANDFGRRNVKVYVIE >gi|289656183|gb|ADCS01000007.1| GENE 14 19879 - 20499 601 206 aa, chain - ## HITS:1 COG:BH1281 KEGG:ns NR:ns ## COG: BH1281 COG0494 # Protein_GI_number: 15613844 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Bacillus halodurans # 19 202 22 205 207 122 37.0 3e-28 MRLNKIEEIVKKLKSEPMEIKNKYSIFVPFIEVEKQTHLLFEVRSKNLNNQPGEICFPGG KIEKHEDYIQAAIRETCEELLISKVDLDVFNGGDFLVNSYGSVIYTTVGEITKSIENIFP NKEEVEDIFTVPLNFFFENEPDIYEVELIAKRNDKFPYSLIPNGEKYDFKRSKDRVIFYQ YEDKIIWGFTAKVIYNLINKLKSNKI >gi|289656183|gb|ADCS01000007.1| GENE 15 20496 - 21641 1227 381 aa, chain - ## HITS:1 COG:no KEGG:Tmath_1583 NR:ns ## KEGG: Tmath_1583 # Name: not_defined # Def: patatin # Organism: T.mathranii # Pathway: not_defined # 1 358 1 359 406 213 37.0 1e-53 MYGLVLEGGGAKGAYHIGSYFALKELGFEFKAVVGTSIGAINGAMIVMNEPDKCANLWKS MSFQDFSTDDSDTTNAIVALMSENTQDGKFSFEKFKGIKETLSSRGIPVDPLRQLVTTYI DEEKVRNSKIKFGLTTLNLTDKKGEELFIDEIEEGKLHNYIIGSCYLPIFKLEPLDGKYY LDGGFFNKIPYNMVQRLGLTPVIVRVNPSNLRDIAFPDDAIVISPSKKYTTSMDFDPKKA DEIMRIGYFDTYKKLNGLFGDKYYINPFDEEMAFEILQNMYFDRLDEILISGKYKNTSKY RVFFEEIIPDLAKELGLKSGYNYVDLVVAMIERDAQKYNIDFLRIYNVDELLNEIMSKEP IINREIEVGTINKLVKKMIKQ >gi|289656183|gb|ADCS01000007.1| GENE 16 21749 - 22180 613 143 aa, chain - ## HITS:1 COG:SPy1823 KEGG:ns NR:ns ## COG: SPy1823 COG2131 # Protein_GI_number: 15675651 # Func_class: F Nucleotide transport and metabolism # Function: Deoxycytidylate deaminase # Organism: Streptococcus pyogenes M1 GAS # 2 138 4 139 153 166 56.0 2e-41 MRKSWNEYFMEITEMVAIRSTCDRAFVGCVIVNKDHRIVSTGYNGSLAGNPQCDEIGHTM RDGHCIATIHAEMNALLYCAKEGIPVKDCVAYVTHFPCLNCTKSLIQAGIKAIYYKEAYR VDEYALELIKKNNIELKQIKGCK >gi|289656183|gb|ADCS01000007.1| GENE 17 22188 - 22781 642 197 aa, chain - ## HITS:1 COG:TM1296 KEGG:ns NR:ns ## COG: TM1296 COG3341 # Protein_GI_number: 15644051 # Func_class: R General function prediction only # Function: Predicted double-stranded RNA/RNA-DNA hybrid binding protein # Organism: Thermotoga maritima # 2 196 7 195 223 112 39.0 3e-25 MYYAVKKGREVGIYTTWDECKAQVIGYSGAVYKKFNTKDDAVLFIKGIPEERTEIQFEED IKDGEIISYVDGSYSVIDGSFSYGAVLFDNDIYETSSKRYYDEDSTMRNVAGELKGAMYA IQRAVELGKKRIYLHYDYAGIENWATETWKANKKGTIEYRNYYKSIKDKIDVVFIKVAAH SGVKYNEIVDKLAKEAK >gi|289656183|gb|ADCS01000007.1| GENE 18 22922 - 23812 1205 296 aa, chain + ## HITS:1 COG:FN0322 KEGG:ns NR:ns ## COG: FN0322 COG3588 # Protein_GI_number: 19703667 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1,6-bisphosphate aldolase # Organism: Fusobacterium nucleatum # 1 295 1 295 295 338 61.0 8e-93 MNTKQLERMRTGKGFVAALDQSGGSTPKALKLYGVMEDSYNNDEEMFKLVHDMRTRIIKS PSFSSERILAAILFKVTMNSKIDDLYTADFLWEQKGIVPILKVDEGLADLNNGVQLMKPM KNLDELLENAKERNIFGTKMRSVIKELNENGIKEIVEQQFEYAKKISKAGFVPIIEPEVD INAEKKSEIEEVLKKEVVKQLEALEKDVYVMFKFTIPTVENLYSDLVNFEQVVRIVALSG GYSRELSNELLSKNQNMIASFSRALSEGLNVNQTEKEFDELLDSSIESIYKASIEK >gi|289656183|gb|ADCS01000007.1| GENE 19 23859 - 25127 1171 422 aa, chain + ## HITS:1 COG:HI0584 KEGG:ns NR:ns ## COG: HI0584 COG1473 # Protein_GI_number: 16272528 # Func_class: R General function prediction only # Function: Metal-dependent amidase/aminoacylase/carboxypeptidase # Organism: Haemophilus influenzae # 13 420 13 423 423 273 38.0 6e-73 MEKYIENAIANRRFFRQIAETGFLEMQTTIEIIKQLKNMGFNVKYGKSIHSKRLGVPSNE ELKNHSKHILLDDVDFDTSEIFEGYTGCIAEMVSPEKGPSFGFRFDIDALPIHETENIDH IPNKLSFRSKNENTCHACGHDGHIAIGLSLCKYIADNIDNLSGAFRIIFQPAEEEVRGGK SIDGAGATDNLDYMISSHIGLNQPDSTIGVGSIGFLATKKIDITFYGISSHAAANPQLGR NALLGAASLALTLHSFAQYSNGMARINVGTLHSGNARNIIAQNSYMQVEIRGENEIILND LYDKLNNAVKGTAISYGLEYKIEIVGEAICFETKYPEFTKYINSKLNEIGFKTTLNPRLN ASEDVSYLLKSTEDKGGKSIHFLLGTTLKAPHHNEAFDYDEEVLTRGLNLYIKTIHILLN KI >gi|289656183|gb|ADCS01000007.1| GENE 20 25166 - 25999 558 277 aa, chain - ## HITS:1 COG:sll0897 KEGG:ns NR:ns ## COG: sll0897 COG0484 # Protein_GI_number: 16332061 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: DnaJ-class molecular chaperone with C-terminal Zn finger domain # Organism: Synechocystis # 218 273 8 64 377 75 59.0 2e-13 MNKILGYFNKAIGTLIDYILQGFIYIVNFLVSIFSSFRQIIGLMLSMSGCLVLLFIFNPI FFGFLLSNPFILTIIILSVVVPFIGKIAVSYLKYIKYMATEYFYDKADFYLLGRRASFEK MEDYGKKYRDDMERERIKREEARRKREEEEFKKRFENMGGGTYWTFGDYGDFEEFFRQAQ QGGGYYQGSYNGQYQNQGNYQGYTSSSFKSQYEQACNTLGVGYNADKYEIKLAYKKMAKM YHPDINKEPGATEMFQKINSAYEFLNDANIQKYKTMN >gi|289656183|gb|ADCS01000007.1| GENE 21 25996 - 26364 510 122 aa, chain - ## HITS:1 COG:no KEGG:Amet_0292 NR:ns ## KEGG: Amet_0292 # Name: not_defined # Def: hypothetical protein # Organism: A.metalliredigens # Pathway: not_defined # 5 121 7 124 126 91 47.0 7e-18 MEDRLDEVENILNEIYDEIPQRMFKYLNGGIIIEENICYHPESKNDDLICLGAYKRSMLG NSIIIYYGSFMNMYGYLSHEELKEKLRETLHHELTHHLEWLAKENDLEIEDREFINRYKE RE >gi|289656183|gb|ADCS01000007.1| GENE 22 26377 - 27096 868 239 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|299143285|ref|ZP_07036365.1| ## NR: gi|299143285|ref|ZP_07036365.1| putative single-stranded-DNA-specific exonuclease [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 239 1 239 239 413 100.0 1e-114 MRFNVAIIGDGIGTIELYRSLREKVSEKFVITIDNINYPYALRKNAIAENSHKLQNFAQK IIKLMIISSPSIALNINRDVRYKIADGLAEFYDKFETAGDRLVLSDAYFKSYLEEKYFAI NVKDVQILLNSINDFDFNRYIISELLKCYIGNEKNIFVMDISLCLIKEYFYELFPDKNFY FLDEFILEEINKLDVLKNNEEKSTVKYRVSAYRRGFYLSCEEIFKEDFSSVKEVLIDEN >gi|289656183|gb|ADCS01000007.1| GENE 23 27086 - 27934 910 282 aa, chain - ## HITS:1 COG:CAC2902 KEGG:ns NR:ns ## COG: CAC2902 COG1947 # Protein_GI_number: 15896155 # Func_class: I Lipid transport and metabolism # Function: 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase # Organism: Clostridium acetobutylicum # 1 268 1 269 280 178 40.0 1e-44 MKAKSYAKINLSLDVVGKREDGYHNIKTIMQKISLYDEIEFRKIDRGFNLKSNVSSINND DNLIYKAWKCMCEYKNRELPIEVTLKKNIPIAAGLAGGSGNGAETLKAINKLYNIGLSIE ELREMSLKIGADFPYMLTGGTVLASGIGEKLERLTDFNGVSVLIVNPNYGIFTKSVYQNI SIEDNRIDFDKIVESMKYKSAKKLKGLLENKMEKVVFKNHPDIALIKCELENFGATSLMS GSGSTVFGLFDDDIALNKAYLYFFEKYKNCYKAVTVGGEDEI >gi|289656183|gb|ADCS01000007.1| GENE 24 28009 - 28272 316 87 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|299143287|ref|ZP_07036367.1| ## NR: gi|299143287|ref|ZP_07036367.1| protein veg [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 87 10 96 96 129 98.0 4e-29 MNQMMLIKNKLEENLGKKVIVKAEVGRKKYTTKEGILKSVYSSIFLVDIQNGDDFSASTF TYSDVLTQTVKIIILDDVKNNDIKKIS >gi|289656183|gb|ADCS01000007.1| GENE 25 28390 - 29994 1547 534 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|299143288|ref|ZP_07036368.1| ## NR: gi|299143288|ref|ZP_07036368.1| hypothetical protein HMPREF0629_00134 [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 534 1 534 534 879 100.0 0 MKKIKTVMTLTLLLSLISTSVYAKEKVTLPTFKVKLNGIEMKNDYSKYPLIVYKDVTYFP MTYHTTRFLGLETKYTNSEGLRIEKINSNSKAEFYESTIKNDKSQSADKPIFKVRLNGKE IKNNEEKYPLLVFRDVTYFPMTWRFCVDEFGWEYSFDKNNGLVINSKNISEKDVSKDLIG NISGDLTINESKDKAKIKLGKSDVIAVKNNVAYYTLNGVLYSAPVDRLDEKKEILKLDAN SINITIRDVNGRLILYYQSGYSPIMSSSKQFELKESKAEELKYNPSFSASVYGRDYCVDI DRFMGSNIENLYEIGTYSNKLVGEKGYSYGYITVNNLQSSAINYSSENLIGYNGNLYAIS NHLNKTRLSKIDVVKNTTKVLNTTDTFGIFRDKNLIYYTDLKNVYTYNMDNGDNVTILQD INANKSSNMIENKMAVLNSNIYYRGYDSYLYLNKNKIADTNNLSNLRTMGNNNRYIVATF SDTGSSSNKIMVFDELGRIVFKTADASQNISIDGNKLYYHTIDNNKLNSVELNK >gi|289656183|gb|ADCS01000007.1| GENE 26 30104 - 30565 706 153 aa, chain - ## HITS:1 COG:CAC0716 KEGG:ns NR:ns ## COG: CAC0716 COG0691 # Protein_GI_number: 15894004 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: tmRNA-binding protein # Organism: Clostridium acetobutylicum # 6 150 8 152 155 175 66.0 3e-44 MAKSVDNALATNRKARHDYFIEDTIETGIELRGTEVKSLRKGKANISDAYAEIKNGEVFV ENMHISPYEQGNIFNVDPLRVRKLLLHKSEIRRLERDTTLKGYTLIPLKLYLNRGRVKLE LAVAKGKKLYDKRETLAKKDAQRKIEQAIKERY >gi|289656183|gb|ADCS01000007.1| GENE 27 30549 - 32648 1614 699 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15894003|ref|NP_347352.1| fused ribonuclease/ribosomal protein S1 [Clostridium acetobutylicum ATCC 824] # 2 691 3 702 730 626 46 1e-179 MIKEKIFESIKDRAPMTKEQIAKLFEIKNKEKSEFYKLLQKLENDGLLFLLDHKYIAIDN KRYRYGKVQGNEKGFGFLLQDDEDVFISENNMNSALNGDEVVVKVLDRKAGDSIEGKIIL IVKRANEKVVGTFQNCQKFGFVVPDDNKISFDIFVSKKDFLGAKDGQKVLVKIEKWPEKN KKPEGKIIKIFGYEGEKEVDILSIAASLNLPMEFSNSALSLAKSIPTFVAEKDLKDRLDL RDITTFTIDGADSKDFDDAVSIEKLENGGYRLGVHIADVSHYVKESDEIDKNAYERGNSV YLIDKVIPMLPEELSNGICSLNEGVDRLTLSVMINLDNNAKVIEHQIVPAVIRSSKRLIY DNVSDLIEKNIVDESVLNIKDDLLLMNELALKLRKRRMDRGSIDFDFPEAKITVDNNGRP TDIIREERRSANKLIEEFMLLCNETVAEQYFWMELPFIYRIHEEPDEEKIESLNKILRHL GLKLNTQNLDSKEVQSLIEKVKGKEFELFVSTLILRSMKKARYSEQNDIHFGLAAKYYSH FTSPIRRYADLTIHRIIKDSIKNKLTTGRINYFENVLSDFAKHISATERLAQDAERMVES VKMAEYMSDRIGEEYPAILSSITSFGMFAQLENTIEGLISYQSLSDYFEYNEEEYSAVGR DTGKVYNIGDKITVKVVNTNITRGTIDFEIVGDENGKEC >gi|289656183|gb|ADCS01000007.1| GENE 28 32648 - 33817 1113 389 aa, chain - ## HITS:1 COG:SA1887 KEGG:ns NR:ns ## COG: SA1887 COG1181 # Protein_GI_number: 15927658 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanine-D-alanine ligase and related ATP-grasp enzymes # Organism: Staphylococcus aureus N315 # 2 371 4 351 356 234 39.0 1e-61 MENIAVVFGGRSVEHEVSIITGMQIMENMDKSKYNPIPLYITKEGKFLTGDCLKNFSTFK KNDFSEAIEVFFKGYTGDSNMYTIKIQKSGLFSKENFGIEVYAKIDAVFPALHGTYGEDG CFQGLLELIQVPYVGCGVMSAAVGMDKVVMKKVFQSENIPMTEYFYFYRDEWKNRDEIIE KAEKLGYSLFVKPANLGSSVGISKATNREEFVEAVEIAVHYDRKIIVERAVENPREINAA VMGYEGDIIVSACEEPIGWKDLLKYEDKYIAGSKGSKGMKNKKKNLPADIPEDVRAEIEK YAHLAFRAIDGMGDARIDFLLDGDKVYVNEINTLPGSIAFYLWEESGISFKELITRLIEL SKIRYKQKSENITSYNSDLLTKTSYGAKL >gi|289656183|gb|ADCS01000007.1| GENE 29 33827 - 35362 1457 511 aa, chain - ## HITS:1 COG:HP0740 KEGG:ns NR:ns ## COG: HP0740 COG0770 # Protein_GI_number: 15645360 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide synthase # Organism: Helicobacter pylori 26695 # 54 506 84 491 493 166 30.0 1e-40 MLYIFLIKFLVIFVTLYFSIIRSNYPIHMLQLEGYENDEYLKWISENKDKVTKLWYKKQD EEKSPLVWTDRAKRLMKKHELVNIIIVFIICIVADIIYLFFDNIAFLVIFLLITGFLLYF YQYKLIVVSNKFAIPKELEINMGFYKQAQEKIRNYKENYDLKVLGITGSFGKTSVKFISN TILSEGLRVKNTPSSFNTPMGLSKIINNELENTTEVFIAELGAKKRGEIEEVAALVQPNI GIITAIGPTHMHLFKTIDNIQNTKYELIEMLPENGVAIFNYDNDYVKPLADKTEIKTIRY GIKDVEKLDVYATDISVDEMGSKFILHIRELGEIECESKLLGVHNISNLLAAASSAYILG LSLEQIANGMKKVEPVEHRLNIVNSNSGVIVIDDAFNSNPIGFRAALDVISEFKDGRKII ITPGMVELGDMEEEENYKIGFEIAKTCDFVILVGKKRTAPIYRGLEDAKYNLENVFRVNS LNEATQVLGHLSAPKDVVLFENDLPDNYSEQ >gi|289656183|gb|ADCS01000007.1| GENE 30 35371 - 36138 906 255 aa, chain - ## HITS:1 COG:Cj0796c KEGG:ns NR:ns ## COG: Cj0796c COG0596 # Protein_GI_number: 15792134 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Campylobacter jejuni # 24 248 28 233 239 109 35.0 4e-24 MEKEKIKVFDTLLSYIEIGEGEPLVILHGWGANIESIMPIVNCAPKKFKVYAYDAAGFGD SEEPKDALSTEDYERYLVEFLRLKNIDKATFIGHSFGGKTLSIFAAKHPERVNKLVLVDA SGVIPKRTLKYYLKVYSFKFLRGIYTKLNFFKDREEVLKKFYEKFGSDDYQNSKGIMRKT FVKVVNEATTQYFDKIIAPTLLVWGENDDATPLYMAKVFESKIKDSGLVVLKGAGHFSYI DDYSTFSAIINSFLR >gi|289656183|gb|ADCS01000007.1| GENE 31 36154 - 36513 510 119 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|299143294|ref|ZP_07036374.1| ## NR: gi|299143294|ref|ZP_07036374.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 119 4 122 122 166 100.0 3e-40 MNLFDDFANNFSDVTKKIRENSKEIKRQTLIKIEIAKEERRLNKSYEELGREFYKINKRL SDGNSNYIDNIMDKIDISISKIEALKTKLSTVFNNVKSEKFDEYKPDESVIYIDERDLK >gi|289656183|gb|ADCS01000007.1| GENE 32 36625 - 36867 288 80 aa, chain + ## HITS:1 COG:no KEGG:FMG_0518 NR:ns ## KEGG: FMG_0518 # Name: not_defined # Def: hypothetical protein # Organism: F.magna # Pathway: not_defined # 3 79 2 78 78 85 54.0 7e-16 MENLRLFTGTWCPFCKRVEFFISKNNISDIEIINIDKDKDARDYLIEKGGMRQVPCLFIG EKPMYESRDIINYLKDRYEK >gi|289656183|gb|ADCS01000007.1| GENE 33 37013 - 37711 970 232 aa, chain - ## HITS:1 COG:AF1248 KEGG:ns NR:ns ## COG: AF1248 COG1811 # Protein_GI_number: 11498847 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein, possible Na+ channel or pump # Organism: Archaeoglobus fulgidus # 1 227 2 223 228 135 36.0 5e-32 MIAALVNGIAIIICSIFGKFVGGKFRTELQDQLMDILAICIFFIGVSTSLSGENVTLVVL SCIIGVIIGDAIGIEDKLYLFGDKVRNLVMKNRNDTSSKFVEGFITGSILFAMGSMAILG SIAAGVSKNYSVLFAKSIIDGVTAVVLSSMYGIGVLFSGIVVFLYEGAIALFAGSLQSFF TPTIVANISGVGGILIMAIGIDMLKIKEIKTSNMMPAILIPIVYEILLNLIK >gi|289656183|gb|ADCS01000007.1| GENE 34 37716 - 38591 877 291 aa, chain - ## HITS:1 COG:CAC2707 KEGG:ns NR:ns ## COG: CAC2707 COG0122 # Protein_GI_number: 15895964 # Func_class: L Replication, recombination and repair # Function: 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase # Organism: Clostridium acetobutylicum # 3 289 6 290 292 250 45.0 3e-66 MNIEIKKNELIIKDLSFFEPAHIFKCGQAFRWKEEQDLSFTNIAFGKILNISKIGEDVIL KNTSIEEFNELWVDYFDLNRDYFSLREELSFDEILRAALEYGNGIRILNQDPFETIITFI ISANNQIPRIKKSIEKISQMYGEKIGEYLGEEYYNFPSADKLALADPKDLREFAKVGFRD ERIVKASKMIRDREIDIGLLYDCPIEMAREELMKLPGVGPKVADCVLLFAFKRQESFPVD VWIKRVMEELYLKKSTNKNKIADEGRRIFGKNAGFAQQYLFFYGRENQLGR >gi|289656183|gb|ADCS01000007.1| GENE 35 38633 - 39274 805 213 aa, chain - ## HITS:1 COG:CAC2713 KEGG:ns NR:ns ## COG: CAC2713 COG2344 # Protein_GI_number: 15895970 # Func_class: R General function prediction only # Function: AT-rich DNA-binding protein # Organism: Clostridium acetobutylicum # 3 209 2 208 214 215 51.0 6e-56 MANRVNRVSETVIRRLPIYHRYLTEILDKKIERISSSELSNLTGFTASQIRQDLNNFGGF GQQGYGYNVSDLRDEIGNILGMDHIYKTIVIGAGRLGSAIARYSGFRKSGFKIQALFDSD KDIVGNDIDSIPILDADDLEEYVRTNKIDVAIITVPKDHAVEVINDLISYKIKGIWNFAP IDISVPDDVVIENVRLNDSLLKLSYYLKENSLK >gi|289656183|gb|ADCS01000007.1| GENE 36 39363 - 41249 1788 628 aa, chain + ## HITS:1 COG:CAC2714 KEGG:ns NR:ns ## COG: CAC2714 COG0488 # Protein_GI_number: 15895971 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Clostridium acetobutylicum # 1 628 2 639 643 501 47.0 1e-141 MLLSISNLNKSYITDLILENVNLIVEDRDKIGLIGNNGSGKTTLFNIITDEISKDSGNIF IPKNLKIGYLKQHLQSTGQNSIYAECEKEFEYLIKIEKELRDLEIKISNPDSLNFDEDVN RYGILQEKFSELDGYSYPSKIRGTLIGLGFTTEDFDKNVDELSGGQKSRLSLAKLLLSEP DLLLLDEPTNHLDINAISWLEKYLKDFKGAMIIISHDRYFLDNVVNKIALLEHNTVTTFK GNYSVYVKQRKIQLELLKKQFEDQQKEIKRQEEIIERYLSLGRDRFIRQGKSRQKLLDKM KKLPPPQDIKKTSFRFSPKYESGREVLKVEELSKSYNSTKIFENINFNVYKQDKIGLIGS NGVGKSTLFKILTGKIDSYNGKFNFGAKVSTAYFDQEMENLNSQNTVIDEIWDEYPHLNH YEIRSYLAKFLFIGDDVFKLIDDLSGGEKGRISLLKIMLKGANLLFLDEPTNHLDIDSKE ALEEALSLYDGTILAISHDRYFLNSVCNKIFAMSENGIDEYLGNYNYYLEKTSPITDDEE KYISKTELNNIKKLEKQKNEQLKKEKAKRKNLEEAIHKIESEINEIDIELSVPEIYNNIE KVQKLSQTRNVKNEELENLYEAWFEMEN >gi|289656183|gb|ADCS01000007.1| GENE 37 41672 - 43132 1906 486 aa, chain - ## HITS:1 COG:no KEGG:Cthe_2424 NR:ns ## KEGG: Cthe_2424 # Name: not_defined # Def: copper amine oxidase-like protein # Organism: C.thermocellum # Pathway: not_defined # 352 471 33 156 276 114 48.0 7e-24 MIMKKKILSLIMILAMMFSLVACTPNMKAYVAEANKVAEWKGYDVDAKAEMKVSMQDEKN GTMTFSVPMTIKGKSSKDMAELVMNLNVKSIKELAAKEGEDVKSVPDSIEFKVVTDGKKV YIAKEVFIKLLGDDVPKAIKEAKEEYIALDTQFATAPIPVAASEKANTGNMDMKYLQSAE FKSDVMKIFDAAFADYKPVVDFKVEGNKFSYEATIDELTKEAVNVASTIAKNWEKTEPTL TPVLNKMGIKVVKEDLNKGMSEFKKDEFEKSAEQVKETLKGSKVKYNVEFKENSFVQNYD ITFNIDKVMKMEMKIQETDTKLESVNIAIPTSVKNMTMEEYVNLFMPESKETAILVAYNG EMIEFEDQEPVIKNDRTLVPFRALLEKMGAEVKWDAVTKKVTAVKDGKEIILEIGNKTAV VDGKKVEMDVPAQILNDRTMIPLRFVSENLGYKVKFDNSTKGLYLIDIYNISDEELANKI KGDSKN >gi|289656183|gb|ADCS01000007.1| GENE 38 43624 - 44337 779 237 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299143301|ref|ZP_07036381.1| ## NR: gi|299143301|ref|ZP_07036381.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 237 1 237 237 408 100.0 1e-112 MKNENVKMGATILISAILPMYCQFTMGDSAFIKGSGMFVGFWVIMNYLFLSTVIELFSNY SKMFKLKKLVISKTTFIMNLFVYIAFLIYINCYFIQQLYIRDNSALNTVARPIVVIIILM TFIINLLCGVFPKKEGSENINVYSISNTNSFKYGREMFGTVIGSFEDGIVFGNLPIKYSD FKSIYYDKKPNALVLKGKNENGNFRISISAVKSMYNTISLIDEAVLAEKIDKNIINI >gi|289656183|gb|ADCS01000007.1| GENE 39 44377 - 45123 756 248 aa, chain - ## HITS:1 COG:lin0323 KEGG:ns NR:ns ## COG: lin0323 COG0778 # Protein_GI_number: 16799400 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Listeria innocua # 1 248 1 245 245 150 32.0 2e-36 MNETINMQLNHRTIREFDNRAVEDEVLEELFEVFNRAPSSTGLQQCSIIRVTDQKIKDEI MKVSTQKYLAKCPELLIFIVDIYRNSRIAIENGFKDNSYRDMDRFFQGFTDALVGAQNMV NAIESLGLGAVYFGSILNDYDRICEILKLPELTFPVVGLGFGYPMQNPQIKPKMPVNLKI FENKYKVFDNYMDSIKGYDDEMTNYYDTRDEGRRSDCFSKQVVKKFEDIVIKRKDVLKSI AKQGFNVE >gi|289656183|gb|ADCS01000007.1| GENE 40 45179 - 45535 442 118 aa, chain - ## HITS:1 COG:PH1083 KEGG:ns NR:ns ## COG: PH1083 COG2033 # Protein_GI_number: 14590918 # Func_class: C Energy production and conversion # Function: Desulfoferrodoxin # Organism: Pyrococcus horikoshii # 4 118 24 136 137 130 57.0 6e-31 MKKLTETVQSGDWKNEKHVPVIHVENNGEELVVKAFVGEEIAHPNTLEHHISWIKLFFQP EGAKFPIEIGSYEFKVHGEEELFTKPEVVSTLKTTKKGILYAMSYCNIHGLWENSQEV >gi|289656183|gb|ADCS01000007.1| GENE 41 45642 - 47216 166 524 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764957|ref|ZP_02172007.1| ribosomal protein L10 [Bacillus selenitireducens MLS10] # 340 491 1351 1507 1511 68 27 8e-11 MIKIRNMIVFVFSILLITIQVYAKEDIQVVLEHPAIYSAQEGDKLNYQLKISLPESYEKY YKSFAVTVLMDSNLSVVENKLDGIELVDSKIEVKVTSVKKNTQNLVTLSINDVNVLNGLR NFTLNISTVVKKDTVSGSNFNNSFVLSYVDKTGSESSQQKDITSNTKVQDGKIVVSDVFS KSTEVTGVTEKNSKIKILIEGKKIAEGISDKNGNFKIGIEPQEVGTKLNIVSYFTKDAED KTASVIVVVKNKEDSYVAGSMVDESIKSYDENKMKLLHDYVAMARDLNVSSVEKEHAARL MAAVANGQYIEVKSKVSGAEIEDAITKLKEAVAIIRKPFMNGYSKTTFGPKNNMKRAEVA SVLTKIYLGKDAQGVFSSFSDVSQEAWYADAVGFMEKKGIITGYNNGKFMPEKSITRAEF ASIISKFANINIDNTPLSFNDVNEEHWAKNAIDAVTSKGLMNGRGKNLFAPNEPITRAEV ATVLNKLQNRTPNKAFMDSYSKNPFKDVSSKFWAYYEILEATGN >gi|289656183|gb|ADCS01000007.1| GENE 42 47338 - 48657 1877 439 aa, chain - ## HITS:1 COG:MJ0326 KEGG:ns NR:ns ## COG: MJ0326 COG2252 # Protein_GI_number: 15668500 # Func_class: R General function prediction only # Function: Permeases # Organism: Methanococcus jannaschii # 1 433 1 432 436 374 51.0 1e-103 MESSFFEKRFKLSERKTDVRTEIAAGLTTFMTMSYILIVNPSLLSQTGMDRGAVFTATII SSVIAILIMGFYANLPFALGPGMGLNAFFTFTVCMQMGKPWEFALTAVFLEGILFILLSM FKVREAIFESIPLTLKKAVSVGIGLFIALIGFTNANIIVPGEGVILSLGDLLTPNSLVLF FALFLMGFLTAKKVKGALLLGIIGSTILALILGVSQLPQTAIFSLPPSIEPIAFKLQLNS IFTFEMFSVMFTFLFVDLFDTIGTLTGVATKAGLLDEDGKLPDVGKALLADAIGTAAGAA LGTSTVTTFVESASGVADGGRTGLTSLSTGFFFLISLFFFPLFSIVPTEATSAALIVVGL FMMSPIKEIDFDDFTESLPAFLTISMMPFAYSIAEGIAFGMMSYALLKVTTGRRKEVSPI MILLAVIFLLRILKPLFPF >gi|289656183|gb|ADCS01000007.1| GENE 43 48923 - 51817 3317 964 aa, chain + ## HITS:1 COG:CAC3006 KEGG:ns NR:ns ## COG: CAC3006 COG1026 # Protein_GI_number: 15896258 # Func_class: R General function prediction only # Function: Predicted Zn-dependent peptidases, insulinase-like # Organism: Clostridium acetobutylicum # 2 962 11 974 976 631 37.0 1e-180 MNNYKLLNEEYISEVASTARVYEHKSTKAKILTLSNNDENKAFGIGFRTIPTDATGVAHI VEHCVLSGSRKYKTREPFMDLIKSSMQTFLNAMTFPDKTIYPVSSRNKKDFYNLMDVYLD SVFYPRMYEKKEIFLQEGWHYELENKEAPLKYNGVVYNEMKGVYSDPQNIVSDAITFNLH KNSSYGIDSGGDPKDIPNLTYENFLAFHKKFYHPSNSYIYLYGDLDMEEALDYIDREYLS NFEYKKINSEIILNDPIQKQERVTETYSVSENELGENKDFLGYSWCLGNADNQLDLFMRN FLAELLIDSNSSPIKTALLQNGFAEDVYAETSTSKALDLSIVAKNTDSSKINEFKSIIEN CLRKVVENGIDKNLLEATLNKFEFAFREGGGTQRSIIYYIRALNLWLYDLSPIDGLKAND LINEIREKINSNFIEDYIEKKLLNNNYSILISVVPEVNKSVIEENECAKKLEAYKKTLSD EELENIIKQHQELIEFQMTEDSEEDKNTIPSLELSDIKDGITHIPHEIYDEKHAKLLFNE QFTNEISYITLSFDIAHISQDKLKDMSIMTDLIGKLSTEKYNYHCLDSEIYKTMGGFVIN PTTYKDYSTKNNFSPRLNLSFKTLDVNFEKSVQLVEEIINSTTFDDKNRIRELLLMEKSS DEATILQNGHNIVMETVKSYFSRQAAYNAQLNGLENYFYLSDLINNFEEEFEKFKVSLIE LKKLVFNKNNLVINYTGSRKSLEINKKYILELAEKLDDSKYEISEFEMEPTPKNQAFTTS AGVQYVSKGYDIEALGEEYSGILTVLGSILSTNYLHYNIRAKGGAYGAGVKFTMSSDMMS YSYRDPHLKNTIDVYDNMYKFLEELTLSTSELKNFIIGSVNSFDPLLSPSAKGDINLVRY LSNITEEKLSKHKKEALSATLEDLKKFAPLIKKAMDKNYLCVIGGEEKIKEHSDLFNEII NLKK >gi|289656183|gb|ADCS01000007.1| GENE 44 52061 - 52702 509 213 aa, chain - ## HITS:1 COG:no KEGG:CDR20291_2961 NR:ns ## KEGG: CDR20291_2961 # Name: not_defined # Def: hypothetical protein # Organism: C.difficile_R20291 # Pathway: not_defined # 1 210 1 211 215 126 39.0 6e-28 MKVFLEKIRIPQKGVTSKYILATVGFMLFGFALGVFQKWIDGTASNYFPMIFQQLDVVNY FGRLSIWILLGTIISVYSKSPLRASINTISFLISMLMGYYLYCNYVLGFLPKTYMMIWVV IACVSFFMAYMCWYAKGKGVFATVLSGTIIGVLFAQAFNLNPLQGFYMYDLMEVITWIIG VLILYRKPKEFVLELGVSVIVAFIFQLIIPHWG >gi|289656183|gb|ADCS01000007.1| GENE 45 52769 - 54229 1313 486 aa, chain - ## HITS:1 COG:mll0964 KEGG:ns NR:ns ## COG: mll0964 COG0507 # Protein_GI_number: 13471082 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member # Organism: Mesorhizobium loti # 1 385 1 338 1015 171 32.0 2e-42 MAIYHLCIKIISRGKGKSAVAASAYRSGEKIKNEYDGEVHDFTRKGGIAHTEILLPQNAP QEFSDRGTLWNSVEKIEKSKNSQLAREIKVALPKELDREKQINLVREYVKENFVKVGMCA DIALHDKNDGNPHCHILLTMRPLNEDTTWGAKSKKEYILDENGEKVKLKNGNYKTRKINT TDWNEQEKAEHWRKAWADITNKYLEENSIQDKVDHRSYQRQGIEQIPTIHMGVSATQMEK KGIATDRENINREIKHQNMILREISRRIKALLNWIRGIGKEEKTEKENTKSTLSPKENLL FIFENLIRKNADNNNADLEKYIESCQLLKEKNINSLSELKESITDLRDKNYKTTRALKDT EKKIDEKTQLIDQSEKYLKYKDTYKAYTKTKKSKQEDFYNEHTAEILLFESAKKYLKKHL GESKTLNISKWKSEVANLKKEKMSLYNQILEIREEVGQAEKVKTCIEQLQEREKRPSQVK QNELDL >gi|289656183|gb|ADCS01000007.1| GENE 46 54309 - 54467 83 52 aa, chain - ## HITS:1 COG:no KEGG:SDEG_1342 NR:ns ## KEGG: SDEG_1342 # Name: not_defined # Def: hypothetical protein # Organism: S.dysgalactiae # Pathway: not_defined # 18 52 5 39 39 64 88.0 9e-10 MFTRAHIYTLTGACVLRRLLAEGISANADTGELHSPTEINFLPLVYFPKEIG >gi|289656183|gb|ADCS01000007.1| GENE 47 54472 - 54627 203 51 aa, chain - ## HITS:0 COG:no KEGG:no NR:no KNFTKDEFYQLITSLIRKEEANLKILKIIESREETESKNIENQETVTDIEE Prediction of potential genes in microbial genomes Time: Fri May 27 07:16:09 2011 Seq name: gi|289656182|gb|ADCS01000008.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.8, whole genome shotgun sequence Length of sequence - 95327 bp Number of predicted genes - 92, with homology - 89 Number of transcription units - 45, operones - 21 average op.length - 3.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 115 - 432 276 ## SDEG_1343 hypothetical protein - Prom 486 - 545 2.2 - Term 458 - 499 5.0 2 2 Tu 1 . - CDS 561 - 1283 788 ## gi|299143311|ref|ZP_07036391.1| conserved hypothetical protein - Prom 1378 - 1437 7.1 - Term 1555 - 1598 7.1 3 3 Op 1 . - CDS 1666 - 2307 530 ## Shel_05290 hypothetical protein - Prom 2337 - 2396 6.3 4 3 Op 2 . - CDS 2407 - 2592 74 ## gi|299143313|ref|ZP_07036393.1| conserved hypothetical protein - Prom 2617 - 2676 2.3 - Term 2619 - 2656 2.4 5 4 Tu 1 . - CDS 2695 - 2856 227 ## gi|295100928|emb|CBK98473.1| Site-specific recombinases, DNA invertase Pin homologs - Prom 3045 - 3104 8.4 6 5 Tu 1 . - CDS 3134 - 3982 1106 ## COG3708 Uncharacterized protein conserved in bacteria - Prom 4196 - 4255 7.9 + Prom 4066 - 4125 7.2 7 6 Op 1 . + CDS 4280 - 4720 494 ## COG3279 Response regulator of the LytR/AlgR family 8 6 Op 2 . + CDS 4730 - 5176 428 ## gi|299143317|ref|ZP_07036397.1| conserved hypothetical protein + Term 5223 - 5284 2.1 - Term 5211 - 5272 2.1 9 7 Op 1 . - CDS 5291 - 6154 1289 ## COG0253 Diaminopimelate epimerase 10 7 Op 2 . - CDS 6172 - 7551 1496 ## CTC02567 glutamate mutase, MutL - Prom 7717 - 7776 8.1 - Term 7777 - 7824 5.3 11 8 Op 1 3/0.000 - CDS 7830 - 8456 925 ## COG3404 Methenyl tetrahydrofolate cyclohydrolase - Prom 8482 - 8541 8.1 12 8 Op 2 . - CDS 8558 - 10237 2291 ## COG2759 Formyltetrahydrofolate synthetase 13 8 Op 3 . - CDS 10267 - 11160 1140 ## COG3643 Glutamate formiminotransferase - Prom 11234 - 11293 16.1 14 9 Op 1 . - CDS 11329 - 12465 1031 ## COG0520 Selenocysteine lyase 15 9 Op 2 . - CDS 12462 - 12710 213 ## gi|299143324|ref|ZP_07036404.1| conserved hypothetical protein 16 9 Op 3 . - CDS 12704 - 13291 560 ## TDE0677 hypothetical protein 17 9 Op 4 . - CDS 13296 - 14306 1081 ## COG0709 Selenophosphate synthase - Prom 14430 - 14489 13.4 + Prom 14389 - 14448 9.2 18 10 Op 1 . + CDS 14494 - 15534 939 ## COG2603 Predicted ATPase 19 10 Op 2 . + CDS 15531 - 16121 701 ## gi|299143328|ref|ZP_07036408.1| DNA double-strand break repair Rad50 ATPase + Term 16124 - 16159 5.1 - Term 16110 - 16145 5.1 20 11 Op 1 . - CDS 16148 - 17458 1282 ## COG1686 D-alanyl-D-alanine carboxypeptidase - Prom 17479 - 17538 4.1 - Term 17498 - 17544 2.2 21 11 Op 2 . - CDS 17548 - 18765 1542 ## COG0426 Uncharacterized flavoproteins 22 11 Op 3 . - CDS 18776 - 19528 887 ## COG0708 Exonuclease III 23 11 Op 4 . - CDS 19525 - 20373 934 ## COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control + Prom 20678 - 20737 12.7 24 12 Tu 1 . + CDS 20764 - 21180 452 ## Aflv_1656 membrane protein + Term 21235 - 21280 0.8 25 13 Op 1 1/0.111 - CDS 21263 - 23053 1574 ## COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily - Prom 23078 - 23137 3.4 26 13 Op 2 . - CDS 23139 - 24692 2035 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains - Prom 24713 - 24772 15.6 - Term 24720 - 24775 11.0 27 14 Op 1 . - CDS 24804 - 25241 536 ## COG1683 Uncharacterized conserved protein - Prom 25266 - 25325 7.8 - Term 25254 - 25306 0.5 28 14 Op 2 . - CDS 25330 - 26205 1042 ## COG1284 Uncharacterized conserved protein - Prom 26241 - 26300 16.1 - Term 26282 - 26321 5.9 29 15 Op 1 . - CDS 26332 - 27870 2270 ## COG2986 Histidine ammonia-lyase 30 15 Op 2 . - CDS 27863 - 27925 68 ## - Prom 27995 - 28054 6.7 + Prom 28275 - 28334 15.7 31 16 Op 1 . + CDS 28502 - 31528 2634 ## COG3899 Predicted ATPase + Prom 31535 - 31594 6.2 32 16 Op 2 . + CDS 31712 - 32230 671 ## COG3859 Predicted membrane protein 33 17 Tu 1 . - CDS 32432 - 33181 416 ## SGO_1444 hypothetical protein - Prom 33375 - 33434 8.9 + Prom 33161 - 33220 12.8 34 18 Tu 1 . + CDS 33291 - 33878 712 ## gi|299143342|ref|ZP_07036422.1| conserved hypothetical protein + Term 33882 - 33923 9.2 - Term 33870 - 33911 9.2 35 19 Tu 1 . - CDS 33915 - 34886 1593 ## COG0280 Phosphotransacetylase - Prom 35036 - 35095 14.6 + Prom 34992 - 35051 10.8 36 20 Tu 1 . + CDS 35071 - 36339 1063 ## Dred_2357 S-layer domain-containing protein 37 21 Op 1 4/0.000 - CDS 36443 - 37048 541 ## COG0218 Predicted GTPase 38 21 Op 2 18/0.000 - CDS 37045 - 39369 2425 ## COG0466 ATP-dependent Lon protease, bacterial type - Term 39378 - 39415 3.1 39 21 Op 3 24/0.000 - CDS 39420 - 40637 260 ## PROTEIN SUPPORTED gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 40 21 Op 4 29/0.000 - CDS 40646 - 41230 743 ## COG0740 Protease subunit of ATP-dependent Clp proteases 41 21 Op 5 . - CDS 41270 - 42574 2057 ## COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) 42 21 Op 6 . - CDS 42652 - 42867 195 ## COG4443 Uncharacterized protein conserved in bacteria 43 21 Op 7 . - CDS 42905 - 44659 1982 ## COG0442 Prolyl-tRNA synthetase - Prom 44689 - 44748 11.6 44 22 Tu 1 . - CDS 44881 - 45504 687 ## COG0344 Predicted membrane protein - Prom 45530 - 45589 10.1 + Prom 45504 - 45563 11.5 45 23 Op 1 . + CDS 45745 - 45963 268 ## 46 23 Op 2 . + CDS 46007 - 46135 71 ## + Term 46146 - 46211 11.1 47 24 Op 1 . - CDS 46191 - 46778 624 ## COG4767 Glycopeptide antibiotics resistance protein 48 24 Op 2 . - CDS 46775 - 47413 818 ## COG0637 Predicted phosphatase/phosphohexomutase - Prom 47464 - 47523 11.0 + TRNA 47631 - 47707 83.8 # Pro TGG 0 0 + TRNA 47752 - 47828 81.7 # Pro CGG 0 0 - Term 47836 - 47867 3.4 49 25 Tu 1 . - CDS 48074 - 48499 548 ## mru_1724 hypothetical protein - Prom 48572 - 48631 7.2 - Term 48510 - 48541 1.0 50 26 Op 1 . - CDS 48676 - 49599 1093 ## COG0388 Predicted amidohydrolase 51 26 Op 2 . - CDS 49652 - 50161 466 ## gi|299143357|ref|ZP_07036437.1| conserved hypothetical protein 52 26 Op 3 . - CDS 50177 - 50656 494 ## COG1576 Uncharacterized conserved protein 53 26 Op 4 . - CDS 50653 - 51204 669 ## COG1335 Amidases related to nicotinamidase - Prom 51325 - 51384 13.1 + Prom 51189 - 51248 10.9 54 27 Tu 1 . + CDS 51361 - 52545 1078 ## COG3919 Predicted ATP-grasp enzyme + Term 52669 - 52697 -1.0 - Term 52655 - 52683 -1.0 55 28 Op 1 . - CDS 52685 - 53107 593 ## gi|299143361|ref|ZP_07036441.1| hypothetical protein HMPREF0629_00207 56 28 Op 2 . - CDS 53108 - 53992 898 ## COG1307 Uncharacterized protein conserved in bacteria - Prom 54025 - 54084 10.3 - Term 54069 - 54127 13.2 57 29 Tu 1 . - CDS 54136 - 56163 2602 ## COG2987 Urocanate hydratase - Prom 56326 - 56385 7.8 + Prom 56310 - 56369 12.5 58 30 Tu 1 . + CDS 56400 - 57662 1383 ## COG1228 Imidazolonepropionase and related amidohydrolases - Term 57651 - 57704 7.0 59 31 Tu 1 . - CDS 57802 - 58443 459 ## FMG_1610 hypothetical protein - Term 58825 - 58860 -0.3 60 32 Tu 1 . - CDS 58919 - 60253 1348 ## COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase + Prom 60233 - 60292 6.4 61 33 Tu 1 . + CDS 60349 - 61176 1049 ## COG0726 Predicted xylanase/chitin deacetylase + Term 61219 - 61247 1.4 - Term 61268 - 61305 6.1 62 34 Op 1 1/0.111 - CDS 61312 - 61542 464 ## COG0695 Glutaredoxin and related proteins 63 34 Op 2 . - CDS 61594 - 61950 523 ## COG0640 Predicted transcriptional regulators 64 34 Op 3 7/0.000 - CDS 61950 - 62816 1178 ## COG0030 Dimethyladenosine transferase (rRNA methylation) 65 34 Op 4 3/0.000 - CDS 62800 - 63372 718 ## COG1658 Small primase-like proteins (Toprim domain) 66 34 Op 5 8/0.000 - CDS 63341 - 64108 886 ## COG0084 Mg-dependent DNase 67 34 Op 6 . - CDS 64119 - 66092 2135 ## COG0143 Methionyl-tRNA synthetase - Prom 66198 - 66257 7.6 - Term 66244 - 66287 3.2 68 35 Tu 1 . - CDS 66289 - 66735 654 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins - Prom 66887 - 66946 10.0 + Prom 66824 - 66883 8.8 69 36 Tu 1 . + CDS 66915 - 68222 1627 ## COG0733 Na+-dependent transporters of the SNF family + Term 68226 - 68264 2.1 - Term 68271 - 68324 9.2 70 37 Op 1 . - CDS 68338 - 69042 1038 ## COG0450 Peroxiredoxin - Prom 69142 - 69201 13.3 - Term 69063 - 69095 -0.1 71 37 Op 2 . - CDS 69205 - 70299 1282 ## COG0726 Predicted xylanase/chitin deacetylase - Prom 70329 - 70388 10.6 - Term 70377 - 70410 4.0 72 38 Tu 1 . - CDS 70414 - 72420 1770 ## TherJR_2662 S-layer domain protein - Prom 72441 - 72500 8.9 + Prom 72395 - 72454 9.4 73 39 Tu 1 . + CDS 72619 - 74217 2056 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains + Term 74226 - 74252 -1.0 - Term 74291 - 74345 15.0 74 40 Op 1 . - CDS 74378 - 77878 4215 ## COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit 75 40 Op 2 . - CDS 77902 - 78552 769 ## TDE2199 racemase 76 40 Op 3 1/0.111 - CDS 78620 - 79813 1605 ## COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases 77 40 Op 4 . - CDS 79842 - 81194 1967 ## COG1757 Na+/H+ antiporter 78 40 Op 5 . - CDS 81223 - 82764 1311 ## COG3283 Transcriptional regulator of aromatic amino acids metabolism - Prom 82846 - 82905 5.1 + Prom 82937 - 82996 11.1 79 41 Tu 1 . + CDS 83125 - 83457 416 ## gi|299143384|ref|ZP_07036464.1| conserved hypothetical protein + Term 83458 - 83514 14.1 - Term 83265 - 83311 3.2 80 42 Op 1 16/0.000 - CDS 83490 - 84104 809 ## COG1394 Archaeal/vacuolar-type H+-ATPase subunit D 81 42 Op 2 16/0.000 - CDS 84094 - 85488 1574 ## COG1156 Archaeal/vacuolar-type H+-ATPase subunit B 82 42 Op 3 . - CDS 85500 - 87263 2137 ## COG1155 Archaeal/vacuolar-type H+-ATPase subunit A 83 42 Op 4 . - CDS 87260 - 87886 842 ## gi|299143388|ref|ZP_07036468.1| conserved hypothetical protein 84 42 Op 5 . - CDS 87897 - 88205 303 ## FMG_1168 V-type sodium ATP synthase subunit F 85 42 Op 6 . - CDS 88205 - 88624 603 ## FMG_1169 V-type sodium ATP synthase subunit K 86 42 Op 7 . - CDS 88626 - 90572 2398 ## COG1269 Archaeal/vacuolar-type H+-ATPase subunit I 87 42 Op 8 . - CDS 90573 - 91610 804 ## COG1527 Archaeal/vacuolar-type H+-ATPase subunit C 88 42 Op 9 . - CDS 91613 - 91933 398 ## gi|299143393|ref|ZP_07036473.1| putative DNA mismatch repair protein MutS2 - Prom 91953 - 92012 5.4 89 43 Op 1 . - CDS 92043 - 92615 597 ## COG1705 Muramidase (flagellum-specific) 90 43 Op 2 . - CDS 92608 - 93927 1140 ## COG1508 DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog - Prom 93974 - 94033 8.7 + Prom 93936 - 93995 5.6 91 44 Tu 1 . + CDS 94061 - 94972 933 ## Apre_1219 hypothetical protein + Term 95040 - 95094 14.2 - Term 95025 - 95084 16.1 92 45 Tu 1 . - CDS 95085 - 95327 336 ## PROTEIN SUPPORTED gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 Predicted protein(s) >gi|289656182|gb|ADCS01000008.1| GENE 1 115 - 432 276 105 aa, chain - ## HITS:1 COG:no KEGG:SDEG_1343 NR:ns ## KEGG: SDEG_1343 # Name: not_defined # Def: hypothetical protein # Organism: S.dysgalactiae # Pathway: not_defined # 1 105 1 106 106 79 76.0 3e-14 MKNIDEKILMEEEIKQLQNKRKKLISQQKQEERKKRDRRIYEKGAVFESIFTESKNFTKD EFYQLITSLIRKEEANLKILKIIESREETESKNIENQETVTDIEE >gi|289656182|gb|ADCS01000008.1| GENE 2 561 - 1283 788 240 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|299143311|ref|ZP_07036391.1| ## NR: gi|299143311|ref|ZP_07036391.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 386 str. F0131] # 9 240 1 232 232 414 99.0 1e-114 MEVGGEPKLKKYIRIVLVLSCILVLTACGNKKEIVLPETKNITEIEIMDNVSETANKIID EKEISKLISDIKDNSKGTNAKSVNDQPTNIENYIIVKFYHKGAEKSPSVAYLYQKNGNSY VEQPYQRIWDLKEEIFNNIIGLISESDNIKAGTEASYKPMVKINDEIYGWVRDLGAVKLG DMKFLGEIKGSKGSLSKTLNDEDENFTSNIYPIGAKIYKWDEKSILIESNDVFSVCEIIE >gi|289656182|gb|ADCS01000008.1| GENE 3 1666 - 2307 530 213 aa, chain - ## HITS:1 COG:no KEGG:Shel_05290 NR:ns ## KEGG: Shel_05290 # Name: not_defined # Def: hypothetical protein # Organism: S.heliotrinireducens # Pathway: not_defined # 1 208 1 207 208 110 28.0 4e-23 MKNSLCEKIIWYALSPTIFQFIKQYWKDIDIKNVKRISKNNYKDIIKRTPDIGSLRKNPL RVCLTSGILWLSIYEAMEGKMNQEQFEEMVSATIEAPMLKKNFQKQKAFDIKTQKKKTEK NKIANAASDSEFNWNTELILGRDENEYTIIYHRCGLCALGKQEHHEELIPYMCKMDYETI TMMGGVLKRKGTIATGADCCDFYICKKGSKWDK >gi|289656182|gb|ADCS01000008.1| GENE 4 2407 - 2592 74 61 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|299143313|ref|ZP_07036393.1| ## NR: gi|299143313|ref|ZP_07036393.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 61 1 61 61 82 100.0 9e-15 MKNIDNKEIQTEEQPQHQKLDGILTKKINGKTFVTQIYFDPNSKDTFQEKLLKVVQSEHK E >gi|289656182|gb|ADCS01000008.1| GENE 5 2695 - 2856 227 53 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|295100928|emb|CBK98473.1| ## NR: gi|295100928|emb|CBK98473.1| Site-specific recombinases, DNA invertase Pin homologs [Faecalibacterium prausnitzii L2-6] # 1 44 559 602 616 63 84.0 4e-09 MREEIEEAKKEKSRAYHRAYSKEYRAKNLEKFREYERIKARKYRARKKLQVTT >gi|289656182|gb|ADCS01000008.1| GENE 6 3134 - 3982 1106 282 aa, chain - ## HITS:1 COG:FN0315_2 KEGG:ns NR:ns ## COG: FN0315_2 COG3708 # Protein_GI_number: 19703660 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Fusobacterium nucleatum # 131 279 1 149 151 191 58.0 1e-48 MNIIESFNRSMNYIESVLDDELNEKEIVHLSGYSFSMFSRIFSILTETTLTEYIRSRKLT QAAIELRETKCKVIDIAVKYGYESTDSFGNAFKKFHGYTPTEVRRGKPFRIVSRVQLALS IRGGKAMNIRIQKKPVFKVAGKSIRNIESALCPKAWEELYSKYSHEVLSEFGSGQSFGMC FDVDNINNINYMACYDVVDVNKAKEKGLEVFEIEEGDYVVVNLKGKVPDCIHEGWKYLME VFFPEHGYMHSGKPDFEVYSEGDMDSENYEMELWVPVVKDNE >gi|289656182|gb|ADCS01000008.1| GENE 7 4280 - 4720 494 146 aa, chain + ## HITS:1 COG:SA2153 KEGG:ns NR:ns ## COG: SA2153 COG3279 # Protein_GI_number: 15927943 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Response regulator of the LytR/AlgR family # Organism: Staphylococcus aureus N315 # 1 146 2 147 147 72 33.0 3e-13 MKLEIIIDEIYKETLLKVFSSSINEDVRMIENFFYETNTPKIIGFKDDEAFIIDADDIVR FFTEDKNTFIQTEKDKFLCRLRIYEIEEKFKNSNFIKVSRGEIVNLDYIKKLDLSFKGTI AIQFKNGDVSYISRRNLSSFKKALGL >gi|289656182|gb|ADCS01000008.1| GENE 8 4730 - 5176 428 148 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299143317|ref|ZP_07036397.1| ## NR: gi|299143317|ref|ZP_07036397.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 148 1 148 148 229 100.0 4e-59 MKTFKNFINSCLIGIGIGNSINLLFCILAGTYSPGVPSYIATQNSVLSAVTKETILYALF GVVSVIAGYIYRNEKFSLLLRTILNLSVIFCYFIFTGYTLHWFINMATVIASSFLFFAIY IIIWISIYREIKKDVELLNKKLNEKNLN >gi|289656182|gb|ADCS01000008.1| GENE 9 5291 - 6154 1289 287 aa, chain - ## HITS:1 COG:FN1732 KEGG:ns NR:ns ## COG: FN1732 COG0253 # Protein_GI_number: 19705053 # Func_class: E Amino acid transport and metabolism # Function: Diaminopimelate epimerase # Organism: Fusobacterium nucleatum # 3 258 6 265 265 110 32.0 3e-24 MEKTFDYFKANPAGNITGFVVWPVYPGYRVAYAKAIMEQIDSDVEQVAFISPSYDGPPLR MDMMGGEFCGNATRTYGLYAATFLEEKGDVEVEVYVSGVNKPLNVLANVEKSYASVEVPP AKKISQIEIDGRNYMVVEFDGITHTIIDDKSEDKEFVERAIDIVRKEFDSSAYGILFLNE KNFELIPYVYVVGSDTIFREGSCGSGSIAAGYYLNKNSQDENFKVDIKQPKGSIEVKARK SEDGQLLYSIGGKIELGEKKKVTITISPEQVKKITQAHKEAVKEGRE >gi|289656182|gb|ADCS01000008.1| GENE 10 6172 - 7551 1496 459 aa, chain - ## HITS:1 COG:no KEGG:CTC02567 NR:ns ## KEGG: CTC02567 # Name: mutL # Def: glutamate mutase, MutL # Organism: C.tetani # Pathway: not_defined # 1 458 6 467 467 494 58.0 1e-138 MNYYLLLDFGSTYTKLTAVDIEKEEIIATAKDITTVTSGVMNGFRNALKKLREKLPSDVV FEKTLACSSAAGGLKMIAIGLSRNLTAEAAKRSALGAGARILETYSYELSDDDINEIVNS DCDIILLSGGTDFGNKRTIIYNAKKLADAKLNIPIVVAGNIGAIDEIKCIFDASAIDYIC TENVMPKVNTLNAEPAREVIRKIFMDRIVTAKGMNDVEGEIDGVLMPTPAAVIKGAELLS TGTENEEGMGDLIVVDVGGATTDVHSIGVGFPSDSDIRFEGLREPFAKRTVEGDLGMRYS ALSLYEAVGEERLRSYFSEEIDILENCKYRAENIMMVPNSQLDYKFDEAMAGCAVEAAVI RHAGSIRKEYSYSRYIYYQRGKDLTNVKVVIGTGGVIVHSKNPVKILDNVKSYDSNILTP ADANFYVDSEYILSAIGLLGMILPDKAVKIMKKYLKKVS >gi|289656182|gb|ADCS01000008.1| GENE 11 7830 - 8456 925 208 aa, chain - ## HITS:1 COG:FN0739 KEGG:ns NR:ns ## COG: FN0739 COG3404 # Protein_GI_number: 19704074 # Func_class: E Amino acid transport and metabolism # Function: Methenyl tetrahydrofolate cyclohydrolase # Organism: Fusobacterium nucleatum # 2 187 3 192 212 136 44.0 2e-32 MLRDLTVKGFVEETYSDSPAPGGGSVAALAAAQAAALLGMVANLTIKSKKYEAVHEEMKS IAEECKKYQDDFVEDIDRDSNSFNGVMAAFKMPKDTDEEKAARSAKIQEEYKNAANVPLS VGLKTLNLLSIAEVLVEKGNSNAITDVGVGLLNLKLAATGAFYNVKINLGSIKDEAYVEE LKKKMRDALKEIDEKTAPLLEKVESMIE >gi|289656182|gb|ADCS01000008.1| GENE 12 8558 - 10237 2291 559 aa, chain - ## HITS:1 COG:CAC3201 KEGG:ns NR:ns ## COG: CAC3201 COG2759 # Protein_GI_number: 15896448 # Func_class: F Nucleotide transport and metabolism # Function: Formyltetrahydrofolate synthetase # Organism: Clostridium acetobutylicum # 5 559 2 556 556 727 64.0 0 MAEFKTDIEIAEECVMEPIVEVAKRLGLKEDELENYGKYKAKISFDAIERFSKNEDGKLI LVTAITPTPAGEGKSTVSIGLTQGLNKIGKNSVVALREPSLGPVFGVKGGAAGGGYSQVV PMEDINLHFTGDLHAMTAANNLLAALIDNHIHQGNALRIDSRNIVWKRVLDMNDRSLRNI VIGLGGKACGFTREDHFMITVASEIMAALCLASDLEDLKVRLSKMIVAYNLEGAPVTAGD LEAQGAMAMLLKDAIKPNLVQTLEHTPALIHGGPFANIAHGCNSLIATRLGLKMSDYLVT EAGFGADLGAEKFLDIKCRLGGLKPDAVVIVATIKALKMHGGVAKTELKEENVEALENGF ANLGRHIENVKKFGLPVVVAVNRFAQDTEAEVEMLIKKCEEYGVEVSLCECWAKGGEGTL DLAEKVVNLIEKQPSNYKPLYDVELSIEEKLNVIVKEIYRGAKVTLTSSAKSQVKKLKEL GLDKMPICMAKTQFSFSDDAKAVGAPTDFEITVQNVRVSAGAGFIVCETSNIMVMPGLPK IPAANNMDVTADGHMKGLF >gi|289656182|gb|ADCS01000008.1| GENE 13 10267 - 11160 1140 297 aa, chain - ## HITS:1 COG:SPy2083 KEGG:ns NR:ns ## COG: SPy2083 COG3643 # Protein_GI_number: 15675841 # Func_class: E Amino acid transport and metabolism # Function: Glutamate formiminotransferase # Organism: Streptococcus pyogenes M1 GAS # 2 296 3 299 299 323 53.0 3e-88 MKRVMCIPNYSEGRDLGKIDKIVECFRAKENVKLVDYQPDKDHNRLVVEVIGEPEAVIKA VVESVKVASEVIDMTKHEGAHPRMGAVDVVPFVPVTECTTEDCVGYAKEVGKAIGEMGIP VYLYEDAATTPERQNLAKVRKGQYEGFFEKIEQPEWKPDFGPQKMNAKSGATAVGARFHL IAFNVNLNTDKVEIADAIAKKIRHIGGGLRFVKAIGLPLEERGQVQVSMNLVNFEKTRIY QAIEMVKSEAKRYGVTVYGTELIGMIPLQALIDSAQYYMQIEEFKYDQVLETLLIAE >gi|289656182|gb|ADCS01000008.1| GENE 14 11329 - 12465 1031 378 aa, chain - ## HITS:1 COG:CAC2354 KEGG:ns NR:ns ## COG: CAC2354 COG0520 # Protein_GI_number: 15895621 # Func_class: E Amino acid transport and metabolism # Function: Selenocysteine lyase # Organism: Clostridium acetobutylicum # 1 372 1 368 379 268 40.0 2e-71 MIYFDNSATTLQKPIEVANAVYNSISSQKYGNPSRGSHDFSINALRGLYKTRFEIAKLFS IDEPLNIALTSNVTTGLNLVIRSLLNNTDHVISTDSEHNSVLRPLYQFQSRGGQVSFLKI DLKGNIILDELKKSLKKNTKALIITQASNVSGIATDIERVFDFCLENNLILIIDGAQGAG NLSLKFKGREFPRTVYAFTGHKSLYGPQGTGGLIFVGDIVLKSVFSGGSGINSFSRTQPD ILPDIFEYGTQNVHSNAGLFEGVKYINETGIENIERNLYKLTKYFYDSVKNIDGVILYND FSSRMAPIVSLNFKHYSSSELSDILWNKYEIATRPGSHCAPKYHESMGTRERGMVRFSFS TFNTFEEVDEAVNILRRL >gi|289656182|gb|ADCS01000008.1| GENE 15 12462 - 12710 213 82 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|299143324|ref|ZP_07036404.1| ## NR: gi|299143324|ref|ZP_07036404.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 82 1 82 82 153 100.0 3e-36 MLKYYLFTFESSNRAMKAELAVNDMDGVRLIPLLPKISAGCGLMMKCEVEKFDEVKNIFI KNNIEIAGIYSVGEDSEVLRII >gi|289656182|gb|ADCS01000008.1| GENE 16 12704 - 13291 560 195 aa, chain - ## HITS:1 COG:no KEGG:TDE0677 NR:ns ## KEGG: TDE0677 # Name: not_defined # Def: hypothetical protein # Organism: T.denticola # Pathway: not_defined # 1 194 1 197 197 202 58.0 7e-51 MKVLDARGIACPRPVIMAKKAINDEKLLEIMVYVDNEIATQNLSKMGQQLGFISEVKMIS DGNYEVVLKKSDNLECELMDLEDDSEYIVVISSDYMGRGDEDFSKKLLEGFIYALREQDV LPKFVVFYNTGIRLTTINTKTIEDLKFMELKGTTILSCGLCLDNYNLKEKLAVGEATNMY RICELQRMYKTVTPC >gi|289656182|gb|ADCS01000008.1| GENE 17 13296 - 14306 1081 336 aa, chain - ## HITS:1 COG:Cj1504c KEGG:ns NR:ns ## COG: Cj1504c COG0709 # Protein_GI_number: 15792818 # Func_class: E Amino acid transport and metabolism # Function: Selenophosphate synthase # Organism: Campylobacter jejuni # 29 335 3 307 308 216 41.0 5e-56 MKLEVCGGCNAKIGAGSLDKILKNIEILKRPEILVGFDGNEDASVISLGNDLGIVFTVDF FPPMVEDPYSFGKIAAANALSDCYAMGAEPVSCLNIVCFPEEEDVKILEEILRGGADKVK EAGATLCGGHSIHDPKIKYGLCVIGKLSLNKMYRNNTPKLGDKLILTKPLGVSLISSGYS VGEVKEEHFKEGVKSMELLNKYSFEILKDYEVNALTDVTGFGLLGHLCEMVSGNYSAIIN SKDIKILPGAKKAAEDFLFTAGGQRNRNAYGKKIEFEIDDFAMEEVLFDPQTSGGLLISV SQKDYKKLLNELLENNIDASIVGEIMMPKEKKIYVR >gi|289656182|gb|ADCS01000008.1| GENE 18 14494 - 15534 939 346 aa, chain + ## HITS:1 COG:Cj0500 KEGG:ns NR:ns ## COG: Cj0500 COG2603 # Protein_GI_number: 15791864 # Func_class: R General function prediction only # Function: Predicted ATPase # Organism: Campylobacter jejuni # 1 325 1 314 332 135 33.0 2e-31 MFKATEFFETLEFKNPLYIDLRSEEEFSNETIPDSINLPILNNEERKIVGILYVNGNVEE AKSKAVKFASHKLTDYYNYIANNCRNRETVLYCSRGGYRSTVLFNLLKTLDEPVYKLNFG YKGYRKYIMNELPKLVSKFNFINLNGYTGCGKTQILYELKKLGADVLDLEKLANHRGSLL GHIGLNRQPSQKMFESFLFDELRNMNGTNIFIESESTKIGSITVPKYLYDAYSKSSNQIL ITSSINFRIKNIKDEYISSENKNFKTEINDALDNLSRYISEKRLIKYKQCIKDEDYDTII RELIEKYYDQNYSIKKTDFALRIDNSNSKECAEKIFNFCNEYGGIL >gi|289656182|gb|ADCS01000008.1| GENE 19 15531 - 16121 701 196 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299143328|ref|ZP_07036408.1| ## NR: gi|299143328|ref|ZP_07036408.1| DNA double-strand break repair Rad50 ATPase [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 196 1 196 196 301 100.0 2e-80 MKISKILIYSVLILVMLITCSCYRDDMAIKEANIPNEDISVSIDYASIYKKDIFDDLTDV EIEVMLEKMASLVKKEFLSSQSFSLNEKNLKSIGIEKINFDNLDKLKINISSKTLLPFGK LIKAKVYSQLSEKSILKDMSREEFESIIEKLSELATNNAKNGEPFKINDEILENLGFKNL SKEFINKLKTEYLYEN >gi|289656182|gb|ADCS01000008.1| GENE 20 16148 - 17458 1282 436 aa, chain - ## HITS:1 COG:STM0863 KEGG:ns NR:ns ## COG: STM0863 COG1686 # Protein_GI_number: 16764225 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanyl-D-alanine carboxypeptidase # Organism: Salmonella typhimurium LT2 # 75 418 41 381 400 155 32.0 1e-37 MKKFLSLVVVAFLLLTPITSFANEITENTEQQIETEIRDQNIFVPTKNGVQRATYEEALK IAELNKHPLTDLCDAYILGDYRSGKILESYNIDEVKAMASTSKLVSIFVVMDKIKDGTIK KNDMVIIDHESSLLTGSSYKLKENDQKTVWQLIKAALVVSGNDAITALAKHISGSKEAFV SLMNKKCQELGLKNAHMVNPTGLTDYMVEDYNKMTTREMFILARELIKAYPELLEITSLT EIAEPDRNYLEYNTNPALGIIKGVDGLKTGYTNAAGRCLIVTGFRKGDNTHTKDTRLIGV IIGSRTDWQRYVSATKLIGEGLDKYKYTVIGNPDEPVTQIEVENAAKKSIDVYEKSNGTV LWDGKSEISRSFEIKPNLKAPLSEGEFVGVVKYTMNGEEILKQDLILNERVSQKGLINII MNMYREIFINIKKEMA >gi|289656182|gb|ADCS01000008.1| GENE 21 17548 - 18765 1542 405 aa, chain - ## HITS:1 COG:FN0512 KEGG:ns NR:ns ## COG: FN0512 COG0426 # Protein_GI_number: 19703847 # Func_class: C Energy production and conversion # Function: Uncharacterized flavoproteins # Organism: Fusobacterium nucleatum # 8 398 6 399 403 355 44.0 9e-98 MENLLTEKINDHLYYMGVNDRQTQLFENMWPLPDGVAYNSYLMTGEKNIALDLVKVNTFG IFIEKLQEILNGGKLDYIVIHHAEPDHSSSLKNLLEIYPDVKIICNKKTLPFLKNFYNIE ENIILVSDGETLELGNRKLTFYMTPMVHWPESMVSYEEETKILFSQDIFGGFGTLNGAIF DDQVRFNDYYYSEVTRYFINIVGKYATQALKALNKLESLEIKGICPVHGCVWRSNPQKIL EIYTNLAKQKVEDGVVIIYGSMYGNTERMAEAVARGVARGGITNIRIRDIATTSLSYLLA DTWRYRGIILGSCTYNNNIFPPMQFLMDELKHQKMKNNIWGIFGSYSWNGGALKKLKEFT EESKLEVIERQIEIQGAATEEELEELIKLGEDMARAIINKSCEIK >gi|289656182|gb|ADCS01000008.1| GENE 22 18776 - 19528 887 250 aa, chain - ## HITS:1 COG:FN0047 KEGG:ns NR:ns ## COG: FN0047 COG0708 # Protein_GI_number: 19703399 # Func_class: L Replication, recombination and repair # Function: Exonuclease III # Organism: Fusobacterium nucleatum # 1 250 1 250 253 366 71.0 1e-101 MKLVSWNVNGLRAVIKKGFVDSFNEINADVFALQEIKLSEGQLDFELEGYKMYYNYAQRK GYSGTAIFTRIEPISVSYGIGMEEHDTEGRVITAEFEKFYFVTCYTPNSKRGLERLEYRM VWEDVFRNYLNKLRETKPVVLCGDLNVAHEEIDLANPATNHKNAGFTNEERSKFTELLKS GYIDTFRYFYPDRKDEYSWWSNFAKSRERNIGWRIDYFVVSEELKGNLSDAKIHQSVMGS DHCPVELVLE >gi|289656182|gb|ADCS01000008.1| GENE 23 19525 - 20373 934 282 aa, chain - ## HITS:1 COG:FN0868 KEGG:ns NR:ns ## COG: FN0868 COG0037 # Protein_GI_number: 19704203 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Predicted ATPase of the PP-loop superfamily implicated in cell cycle control # Organism: Fusobacterium nucleatum # 12 267 21 277 277 227 43.0 2e-59 MDGNIQIKTVREIERSLIKSYRKDIWVKFVRAINEFEMISEGDRIAVAISGGKDSLTLAK LFQELKRHGKMNFELEFIAMDPGYRKENRQVLEYNCEKMGIPVKIHNSDVFEVANRVAQN NPCYMCARMRRGNLYSKAQELGCNKLALGHHFNDVIETVMLNVIFAGNFKTMMPKLHSDN FEGLELIRPMYYVEEEAIKRFMRSTGLHALDCACAIAEKKEGNMRFYIKDLIADIKKVHK NADINILRSAENVNMGAIVGWKNRTEKHLFLEKYNDREGMDV >gi|289656182|gb|ADCS01000008.1| GENE 24 20764 - 21180 452 138 aa, chain + ## HITS:1 COG:no KEGG:Aflv_1656 NR:ns ## KEGG: Aflv_1656 # Name: not_defined # Def: membrane protein # Organism: A.flavithermus # Pathway: not_defined # 1 138 108 231 231 103 40.0 2e-21 MKQIKRGRGPSFMNFIGSICIILFCSLWTIIALNTYKYLEFPTSLAFPLLGIIGILMGIF HAIYNFKNFSSKEKFSEYDITDDEKDSLGNFQFKNSENSKYDTDRIIKIKSKPFKYCPYC GEKLNESYNFCPDCGKKL >gi|289656182|gb|ADCS01000008.1| GENE 25 21263 - 23053 1574 596 aa, chain - ## HITS:1 COG:SMc00195 KEGG:ns NR:ns ## COG: SMc00195 COG1368 # Protein_GI_number: 15965601 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily # Organism: Sinorhizobium meliloti # 54 557 78 582 639 127 24.0 6e-29 MEKKKMNIFLCSFLLAILITATSIFISSYGYCDGIINNFFVEYKILLFNFIPAFLIVLAL AYLLKSLSFSFLISSLVINLGAFANYIKIVYREEPLFARDITLIREAFTMSQKYDLNFKS PNAIVLFSSMLLSIVIFFILRRFEYGYKFRAIGFIASVIILAFFSKQYLFDYSVYHLLGA KTNLNMWIEIDSYKTKGFLYPFIYSIKSSRPYKYSKYNKIKAVEDYNKYIGEDIPEDQKV NIVCIMLESFKDFYKYQNPKMEFERNPYEYFHKLQNESIHGQILVNSFGGGTFLTESNFM TGYKDNPPFNRTTQSYVRYFKEQGYSCFGFHPFVGSFYNRNNAYRNLGFDKFFEYNNTFK AIDENILMDVDFYPFILKKYDEQTEKGPYFSFAVTYQNHGPYSKDVLINKEPAIKWQEQY DREWYNYFNNYLEGIEWASDTMKMLTEHFRKNDKPTILIMFGDHCPSMGDNKIVFDMFGI NDSADNSEGLRNLYETPYIIWANDAAKKVFDKDFTGEGRDVEPAFLMNELFSYVGWKGSP YNQCIDELTKHVTVLKQNWYCIDGEFSNKTSEYEDTLIDKYRNVEYYVSHMLDKQK >gi|289656182|gb|ADCS01000008.1| GENE 26 23139 - 24692 2035 517 aa, chain - ## HITS:1 COG:BS_yfmM KEGG:ns NR:ns ## COG: BS_yfmM COG0488 # Protein_GI_number: 16077809 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Bacillus subtilis # 1 514 1 514 518 696 66.0 0 MSILTVKNLSHSYGGREILKDVNFRLLAGEHVGLVGPNGEGKSSFMDIITGKLIPEEGEI SWAKYVRAGYLDQHATYNGDYTVRDVLKDAFSHLFEIENEISNLYMKMGEVDEKELDALM DEVGILQSLLENHDFYMIDSKIDEVSRAMGVSQIGLEKKFKELSGGQRSKVLLCKLLLEK PDILLLDEPTNYLDEEHIQWLKRYLQEYENAFILISHDIPFLNSVINLIYHVENMELNRY VGDYSEFERLREAKLKQIEAAYKKQQQEIADLEDFVARNKARVATRNMAMSRQKKLDKME RIELVKEKPQPEFQFKETGAPSRLIFETKDLVIGYDKPISKPLNLRMERGSRIAIVGANG LGKTTLVKTLLGEINAISGRIENGQNLKVGYFCQEEFYDDKRTPIDEIWDAFPSWEQFHI RAALAKCGLMTEQIESLIKVLSGGEQAKVRLCKILNTSTNVLMLDEPTNHLDPMAKDELK RALKEYKGGIFLISHEKDFYEEIATEIWRMEDYSLLG >gi|289656182|gb|ADCS01000008.1| GENE 27 24804 - 25241 536 145 aa, chain - ## HITS:1 COG:FN1602 KEGG:ns NR:ns ## COG: FN1602 COG1683 # Protein_GI_number: 19704923 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Fusobacterium nucleatum # 4 144 7 149 156 130 50.0 5e-31 MENLLISACLCGENCRYDGKNNLIVQIDELRKKYNLIIVCPEILGGLSTPRVPAEIIGGK VINKIGKDVTYEFELGAKKSLELAKKYNCKIALLKDKSPSCGSKKIYDGTHRGKLINGRG FTAKILLENNIKIYGEENVNELLKN >gi|289656182|gb|ADCS01000008.1| GENE 28 25330 - 26205 1042 291 aa, chain - ## HITS:1 COG:CAC1325 KEGG:ns NR:ns ## COG: CAC1325 COG1284 # Protein_GI_number: 15894605 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Clostridium acetobutylicum # 14 276 11 270 285 171 36.0 1e-42 MKFNLSLNISKEIFIKKLFSVIFGTFASSIALVYILKPNGMISGGISGLSVLIENVTGIP LGLLVFLLNLPIMILGLFLLSREFMFFSVVSIFLLSIYISLLEKINPNYILTENIILACV YGGVINGIGGGITFRNGTSTGGFDIIAAILKKYFNISIGSVLMMLNIVIIGISSFVYSTD KALFTLISLFICYQVIDKIQLGVGKQKQVFIISNNHEQITRTIQSQLDRGVTYINGKGAY SSNEITIIYLICSSRQIVKVKNIVKELDPKAFMAVSDTAEIQGSGFKTIEI >gi|289656182|gb|ADCS01000008.1| GENE 29 26332 - 27870 2270 512 aa, chain - ## HITS:1 COG:SPy2089 KEGG:ns NR:ns ## COG: SPy2089 COG2986 # Protein_GI_number: 15675846 # Func_class: E Amino acid transport and metabolism # Function: Histidine ammonia-lyase # Organism: Streptococcus pyogenes M1 GAS # 1 512 1 512 513 751 75.0 0 MNKVVLTGNSLKLEDVVAVARDHVEVAISDEKIEAVKASRKIVDDIIEEERVVYGVTTGF GSLCKVSISREDCSQLQENLIRTHSSGFGNPLREDEVRAIMLIRINSLVKGYSGIRMETV KVILDMLNKNVIPFIPEKGSLGASGDLAPLAHMVLPMLGLGRAYYNGELLSGKEAMDRAG IDIITLQAKEGLALINGTTVLTAVGALATYDAIELLKLSDIAGALSLEAHRGIVDAFYEK LHTIRPHKGCLATAKNMLDLVEGSTYTTHTAQIRVQDPYTLRCIPQIHGASKDSIAYVKE KVEIEINSGTDNPIITPDGDVISGGNFHGEPMAQPFDFLGIAASEIGNVSERRIERLVNH QLSEFPSFLVKYPGLNSGFMITQYAAAALASENKVLAHPASVDSIPSCENQEDFVSMGTI AARKARDIIDNSRRIVATEIMAACQAIDFRAEENFKLGVGTEAAYKAVRSELKFLENDKD IEIYDELEKATELLKNGKIVKAVEEKVKLNIQ >gi|289656182|gb|ADCS01000008.1| GENE 30 27863 - 27925 68 20 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MYHTFLNVEGVSKRTEEKNE >gi|289656182|gb|ADCS01000008.1| GENE 31 28502 - 31528 2634 1008 aa, chain + ## HITS:1 COG:FN1400_2 KEGG:ns NR:ns ## COG: FN1400_2 COG3899 # Protein_GI_number: 19704732 # Func_class: R General function prediction only # Function: Predicted ATPase # Organism: Fusobacterium nucleatum # 247 1002 2 760 772 389 33.0 1e-107 MSKIYAKLFGVPQILKDGEKVFFPYAKINALIYYILINKVVSRDEIAGLLWPDENEKIAK KNLRNALYQSKKSLDMDFIISPKKSILVLNDDLNIECDVNLFIEDPIKNSNLYDGDFLQG FFLKEAESYEYWITKMRNLYQDKFTNISYKKIESNIENGIYENVEKDINALTQIDEFDER NFRLLMKFYQKTGRNGKVVETYYDLSKLLQNELGVEPDRETKKIYEESIKQININNSRPK IVDYFFYGRYNEIAKIEDTLKSFSDNKPAKSIFIRGEAGIGKSSLKRKILENKEENFIIL ESFCYQAEENYALRPFGIIIDKMSKVLKEFKIPLPTFWGTTMSKLFPSFDESSHDIKLLE SKEPLKFDLLTQVIVEAAKKINEKKKLLIVFEDIQWMDQTSLKLLTSVMLHLKDEAIFIL TARKQFNLDVDDLLTSLERYDKIETIELERFNHEESLEFILKSLPDREIQTETLEKIYLE TEGNSFFLSEYVNLIKSDDQTDLMTSKMVDAIKSRFLYLSKSEKDLLDIVSFFYDEAPIE TICEITGQGEFDIIGLLEELEKRNILTEVVHKNHIGLIFTHTKLREYVYMIQPNSKKKIV HKRIGEILEAKLEQKKKDPYIYSKLVYHYSSAGEDLKALKYKIETLNYYLNFSHELFPIL NFSELEQDEKIYISRDKIQDMFEKLSENFAELMNKERSEELKTLEVEFFYMKGRYMIRDG NYGEGLDDIRYVIQKAGEIGNRDYVLDGYKQMIFYNIQTNNSHDMIEYIELALDLAVKCN YHKEIGILLRLKGLYNIMIGNYFIAEKLLTESINTFKVTDEVANRYAINIAAAYNYIGEL RFATGDYEDATEQFKAAIDLSKNKNALSSLSIFYINMGKAYFALDNVKKAEEYFYFAYNL YGQFDSFWKRPVLDSYMALTEIRLKKYSDSVLHIKSALEFAEKLKDPRDLGTVYFAHYMI SKMAQKDTVLFEIYKDILKETADSYKDKSLNYLDAYRDAYEINRIITK >gi|289656182|gb|ADCS01000008.1| GENE 32 31712 - 32230 671 172 aa, chain + ## HITS:1 COG:CAC2928 KEGG:ns NR:ns ## COG: CAC2928 COG3859 # Protein_GI_number: 15896181 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Clostridium acetobutylicum # 6 150 43 183 210 99 40.0 4e-21 MRNEKSKMLAEAGVMIALSQILSYVKVFQMPQGGSITIASMVPIIFFSLIWGGKKGILAS VTYGILQFALGGEGILNPLSILLDYLLAFGVLGVAGFFPKNITGAITGTSVAVLLRYFFH FLSGWLVFYMYAPEGVAPWIYSLSYNSYMLVELVISVVVITIIYKPLINKLK >gi|289656182|gb|ADCS01000008.1| GENE 33 32432 - 33181 416 249 aa, chain - ## HITS:1 COG:no KEGG:SGO_1444 NR:ns ## KEGG: SGO_1444 # Name: not_defined # Def: hypothetical protein # Organism: S.gordonii # Pathway: not_defined # 24 193 21 187 234 80 30.0 5e-14 MILKKLFTHEEQLNNFIKYGKFHIFVIIFMFAFMYYCHKRKKDDKFEKAMIYIIFATQIL LYGWYATGELFLIDGLPLYTCRIAGVALVIAYFFKSSLLKSLGVYLGIVGGIVALFTPAL YPYRMYHFTNINFFVFHLLLLGLSTYHLSNDEGEVIYKNRRRVQALTGVILIGVALVNHF VGSNYSYTASPPIFTTVAQNIKWIIYFIVLLFLYELSIYLESVVIRIIAKRKKAEEEEEI HEYFYKDNF >gi|289656182|gb|ADCS01000008.1| GENE 34 33291 - 33878 712 195 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299143342|ref|ZP_07036422.1| ## NR: gi|299143342|ref|ZP_07036422.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 195 1 195 195 261 100.0 1e-68 MKKISIMLCLLLLLVGCKKETNQNNSINKNDNTNTTESNSTINENESTTYTYEGTDGDYS AKITISKFTDEDIQEIKETYGENSDTYLSLSDDRPEYIAKTYVLYTGEGIENIQDEEMLS VTLSCNNEKISTYELNSEKDIIGALQGKKNISELYFIYNDKERNIIPDENSHFKLEANSS KNNIINFNIELENSK >gi|289656182|gb|ADCS01000008.1| GENE 35 33915 - 34886 1593 323 aa, chain - ## HITS:1 COG:BH3823 KEGG:ns NR:ns ## COG: BH3823 COG0280 # Protein_GI_number: 15616385 # Func_class: C Energy production and conversion # Function: Phosphotransacetylase # Organism: Bacillus halodurans # 3 322 4 323 330 382 62.0 1e-106 MALIENLKIRVSEKMPVIVFPEGEDERILKAAKKLNEDKVLKPILLGNRSEVEESADKNG IDLSKLEFIDPSEYKEIDMLVEKLVERRKGKLDEDGARKLLMDPNYFGTMLVYTGYAHGM VSGAVHTTGETVRPALQIIKTRPGFSRTSGSFIMLRDEEMYLMADCAINIELDEDGLAEV AVLSEETAKKFGIDPKVAMLSFSTKGSASHDLVTKVANATEKAKKLNPDMAIDGELQFDA AFVPEVGAKKAPNSNVAGYANVFIFPSLEAGNIGYKIAQRFGGFEAIGPILQGLNAPVND LSRGCNADEVYSLAIITAAQAVL >gi|289656182|gb|ADCS01000008.1| GENE 36 35071 - 36339 1063 422 aa, chain + ## HITS:1 COG:no KEGG:Dred_2357 NR:ns ## KEGG: Dred_2357 # Name: not_defined # Def: S-layer domain-containing protein # Organism: D.reducens # Pathway: not_defined # 18 252 27 256 1081 110 33.0 8e-23 MKKIFIFTLILLLISKNVYAQKSFKDINNHWAREYIEDISQQNIILGYNDGTFKPDREIL KSEAYAIINRIFDLKETKNLSFKNVSSKDWYYFDIQKAVSAGYLKDGNFFYNEPIKRSEV TKILGYLYNLKDNEKNYNFFKDISNLSDEEKTSIGALVKSGIVKGYENYEFKPNEKISRA EFSKIISMCIKVYGRNISKNIAIQQDNKNVLRAKLMDSISQAESINSSNYTKESVENLKS ITLSANRILRDGEATEEQLNIAIKYVNDAIKSLVLIIKEPTLTITALDNSNNILPVSLLI NDMPFENGGHLKPGKYLVKISSPNMNSTNTYVTIDNEDKNITVYLTNSATQKFNLTLSEG LESPMGYSFYKNERVLIKILIPAGMQIDTFTVNGSPKKVLDNEFRFLITTNTHIEVTFKP IY >gi|289656182|gb|ADCS01000008.1| GENE 37 36443 - 37048 541 201 aa, chain - ## HITS:1 COG:SPy0886 KEGG:ns NR:ns ## COG: SPy0886 COG0218 # Protein_GI_number: 15674911 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Streptococcus pyogenes M1 GAS # 12 186 18 192 199 197 55.0 2e-50 MKVLKSDLEKVAVHKNQYPEMDLFEFAFAGRSNVGKSSFINSMLGRKNLARTSSTPGKTR TINFYRVNDDLRLVDLPGYGYARVSKTEKSSWSKIINEYLDDRENLLEVVLLVDIRHEPT EQDLQMYEYILSKGYSGIVIATKADKISRGQYAGHISKIAKKLSIKNRDMIIPFSSVDKN MVDEMWFIFEDIVKHFSEEEE >gi|289656182|gb|ADCS01000008.1| GENE 38 37045 - 39369 2425 774 aa, chain - ## HITS:1 COG:BMEI0876 KEGG:ns NR:ns ## COG: BMEI0876 COG0466 # Protein_GI_number: 17987159 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ATP-dependent Lon protease, bacterial type # Organism: Brucella melitensis # 8 770 34 792 823 745 52.0 0 MDKKTKLSTIALRDLIVFPRMVTHFDCGRPKSIAAIEAAEMTGSHVFLITQKNPNVMDPK REDLYDYGTVAIIKQILKLPGGVVRVLVEGLNRAKILEFSLGDEYLEAVVENFEEEVKED KEESAEITAAMRLVEADLEKYSDLDSRLIPGLLQSVVDNSTASALVDTSAAYINLKIEES QKILETLNSYDRLLLFHGILQREIEVLSIEKNIDKKVKSNMNKVQREYYLKEQLKVIREE LGDESEEDTSLSYEDKIEKKKLPKIVKEKALKEVSKLSKVNSASPEYTVILNYLDWILDL PWLESSSDDANLNEARKILNDEHYGLKKVKERILEFIAVRKLSDSTKGPILCLVGPPGVG KTSIATSIAHALNKEFVRMSLGGVTDEAEIRGHRRTYVGALPGSIISLIKKAKENNPVFL FDEIDKVGNNYRGDPASGLLEVLDPEQNKTFTDHYLELPFDLSNVFFIATANTTQTIPRP LLDRMEVIRLEGYTPEEKFNIAKSHLLPKQIKENGLTKSQFKISDTALKDIIDYYTREAG VRGLEKEISRCARKASLQIIEEDKKIVSVTSRNLSKYIGERKFLFDTVEKSDQVGIVNGL AWTEVGGETLQIETTIMPGSGKLTLTGQLGDVMKESAMAAISYIASNSEYYEVDADFRTK KDIHIHVPEGAVPKDGPSAGVTMVTSVLSALTERPVAKDVAMTGEITLRGRVLAIGGLKE KLLAAQRMGIKKVIIPFENKRDLVEIESNVLNSLKIIPVKEIKEVEKFALKEKK >gi|289656182|gb|ADCS01000008.1| GENE 39 39420 - 40637 260 405 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 [Bacillus selenitireducens MLS10] # 157 393 255 448 466 104 33 1e-21 MSKSDEILRCSFCGKTQNQVKKLIAGPDVYICDECIGLCSDILNEEKVNTKDEKLDLKIP EEIKSVLDSYVIKQDKAKKALAVAVYNHYKRINSSIRNPEIELQKSNILMIGPTGSGKTL LAQTLARILNVPFAIADATTLTEAGYVGEDVENIILKLIQAADYDIEKAEKGIIYIDEID KIARKSENVSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPNQEFIQIDTTNILFIV GGAFDGLDKIIESRIGKTSMGFGSELVDKKKQRENILDKIETGDLLKFGLIPELIGRLPL TVTLESLDEAALVEILTKPKNALVKQYKELLKLDNVELEFETNALKQIAKIAIDKKAGAR GLRGVIEHIIMDIMYEIPSRKDVEKVIVTKDSVIGKKRPKLILKK >gi|289656182|gb|ADCS01000008.1| GENE 40 40646 - 41230 743 194 aa, chain - ## HITS:1 COG:RSc1711 KEGG:ns NR:ns ## COG: RSc1711 COG0740 # Protein_GI_number: 17546430 # Func_class: O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Protease subunit of ATP-dependent Clp proteases # Organism: Ralstonia solanacearum # 1 193 23 215 217 279 70.0 2e-75 MALVPMVVEQTNHGERSYDIYSRLLKERIIFLSGEINDVTADLVVAQLLFLEAEDQNKDI QIYINSPGGSVSAGFAIYDTIKYIKCDVSTMVIGLAASMGAFLLAAGTKGKRFALPNADI MIHQPLGGAQGQASDIKIHAEKILEIRERINKILSEETGQPLEKVERDTDRDYYLSAKEA VEYGLIDKVIEKRD >gi|289656182|gb|ADCS01000008.1| GENE 41 41270 - 42574 2057 434 aa, chain - ## HITS:1 COG:CAC2641 KEGG:ns NR:ns ## COG: CAC2641 COG0544 # Protein_GI_number: 15895899 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) # Organism: Clostridium acetobutylicum # 2 432 3 431 431 261 42.0 2e-69 MTEIKSREKNTVKFDMILKAEDVKKAETEVYNKNKKYFQIPGFRKGHAPRKIIENVYGKG VFLEDAVNELLPKYYEETVKELGIEVVDQPEINIEEANSGEDIKVEVSVTVKPEVVLGEY KNIEVEDVKYEVTEELINSELDNQRHMNARLVNIDDRAAKIGDKVNIDFKGFVGDETFEG GAAEGHELELGSNTFIPGFEDQIVGKNIGDEFDVNVTFPEEYFSEELKGKEARFEVKLNS ISFEELPELDDEFIKDISDFDTVDEYKADIKEKKEKEFEEREKREKEEKVLEKVVETMEV EVPDAMVNSQIDSQVQNFDRNLKAQGMSLEDYIKMLGTTMEAFRENLRADALKQVKTSLA IEAVAKAENFEVSEEEVESEIDKMVKDYFKDDEEQQKKMKEYMLENNKEGFKENLISKKT VDFLFENAKFVEKN >gi|289656182|gb|ADCS01000008.1| GENE 42 42652 - 42867 195 71 aa, chain - ## HITS:1 COG:CAC0545 KEGG:ns NR:ns ## COG: CAC0545 COG4443 # Protein_GI_number: 15893835 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 2 71 3 72 74 75 58.0 2e-14 MAEFKFEITKHIATMSTNVKGWSKELNMVSWNGRTPKYDIREWSEDHQMMSKGITLSEEE IEILKNALEEL >gi|289656182|gb|ADCS01000008.1| GENE 43 42905 - 44659 1982 584 aa, chain - ## HITS:1 COG:BS_proS KEGG:ns NR:ns ## COG: BS_proS COG0442 # Protein_GI_number: 16078720 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Prolyl-tRNA synthetase # Organism: Bacillus subtilis # 1 556 1 556 564 556 51.0 1e-158 MKLSKLYMPTLREVPADAEIASHQLLLRGAFIRKSASGIYTYLPLGYKVIKKVEKIVREE MDRAGSQEILMSAIQPKEIWEASDRWDRFGPEMFKLRDRNDREFCLGPTAEEYFTTLIKD EVKSYKQLPLNLYQIQTKYRDEKRPRFGINRAREFSMKDAYSFDTTPETMQVSYMEMYRA YEKIFDRLGLDYKIVEGDNGAMGGKKSHEFIALSETGEGVIAYSPTGKYAATQEKAKVVY ELPERCERLELEEVYTPDSTTIEAVASFLGLKSQNCIKAIDLMVSGNPVIVFIPGDRELN MAKLEGYLMTPEHEIEMMNDEQILSINSAPGYTGPIGLSEDVRLIFDKSITQMDNLVVGA NKVGYHIKNANYDRDFKGEICEDLLEVREGDIIEGTNEKFKFARGIEVGNIFQLGTKYSE ALNATYLDENGKEQLIWMGSYGVGVTRTVTAIVEQNYDENGIIWPMSVAPYHVIVTVVNP KDEIQLELGEKIYNSLVELGHEVLLDDRNERAGVKFKDRDLIGIPIRITVGKRAAEEIVE YSLRRETEKTEIFAKEAIEKVSGEIFNSSVKDNLSKALLDLFEN >gi|289656182|gb|ADCS01000008.1| GENE 44 44881 - 45504 687 207 aa, chain - ## HITS:1 COG:TM1447 KEGG:ns NR:ns ## COG: TM1447 COG0344 # Protein_GI_number: 15644196 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Thermotoga maritima # 11 201 8 192 196 81 28.0 9e-16 MGDFMIAFYFIVGYLFGNFQTAYLMSRYLKHEDIREKGHGNSGASNAVVNYGWKFGFVVA LVDILKVYVAVKLSKYLMGVYLPSSEYMLHLCGLGVFLGHSHPFYMGFRGGKGTACIVGI LLSMGTVPLIAGVFGISIVTFLTDYIVIGTFFLNIIFIFFTVNLGYGNVSVAISVLIFSI SLIYHLKNYRRILNGTEKRLSGSLKKK >gi|289656182|gb|ADCS01000008.1| GENE 45 45745 - 45963 268 72 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MVEAAGVEPASESSLQLDSPSAVYLFLFDLKLRQTGFLNYIIINTPSAMINYRALFPTDL TPDLKPWGSLNR >gi|289656182|gb|ADCS01000008.1| GENE 46 46007 - 46135 71 42 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFETFYVVPHNSSLLKAPNPRRSQFRPHMTYYMVILFISQFF >gi|289656182|gb|ADCS01000008.1| GENE 47 46191 - 46778 624 195 aa, chain - ## HITS:1 COG:CAC0829 KEGG:ns NR:ns ## COG: CAC0829 COG4767 # Protein_GI_number: 15894116 # Func_class: V Defense mechanisms # Function: Glycopeptide antibiotics resistance protein # Organism: Clostridium acetobutylicum # 92 191 47 150 308 63 35.0 3e-10 MKLLLFFSMIGILVFVFTFILFSLIRTNFFKSLKRKSNPKRELILSIFVAYIAVMCLLLF LPNVFMSNHGIDLTSQNFDFVGDFKDRISAGSWGVNIIPFRTMKSYIKYSGVFHVFLNIA GNILIFIPFGTMLPMLYDDMRKFYRVAVLSATFSFLVEIVQFFVGRSVDIDDFILNTIGG MIGYFVFKMIQNKYN >gi|289656182|gb|ADCS01000008.1| GENE 48 46775 - 47413 818 212 aa, chain - ## HITS:1 COG:CAC3231 KEGG:ns NR:ns ## COG: CAC3231 COG0637 # Protein_GI_number: 15896477 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Clostridium acetobutylicum # 1 208 5 212 215 112 33.0 7e-25 MKAVIFDLDGTLIDSMPMWRDLGRDYLESLNIELEDKVAQKIATLSLKMNSVFLKEYYNL KDSAEKIYDDFKDLVMHFYLNEVKPKDDAFRVLEDFKKSGYDIVLGTATSTEFIEPLFNR FNIREYFNFVQTCDMVGIAKNDSEYFKLISKRLNHSPDEIFLFDDAPFALKAAKKAGLVT VGVYEQTCSEHWDEIKAKNDYHINSFREWEVR >gi|289656182|gb|ADCS01000008.1| GENE 49 48074 - 48499 548 141 aa, chain - ## HITS:1 COG:no KEGG:mru_1724 NR:ns ## KEGG: mru_1724 # Name: not_defined # Def: hypothetical protein # Organism: M.ruminantium # Pathway: not_defined # 1 139 1 139 142 137 56.0 1e-31 MWTMLWPLLVVILSNTFYNISQKSIPQNANTFGTLMITYIVAAVCTGIAFITTTKPQNAI PELSKINWTAFALGLAIVGLEIGYLFIYRAGWKISTATAVANILVSCLLIVVGAMIYKEV ITPRQLAGMVVCVIGIALITK >gi|289656182|gb|ADCS01000008.1| GENE 50 48676 - 49599 1093 307 aa, chain - ## HITS:1 COG:sll0784 KEGG:ns NR:ns ## COG: sll0784 COG0388 # Protein_GI_number: 16331918 # Func_class: R General function prediction only # Function: Predicted amidohydrolase # Organism: Synechocystis # 1 307 6 308 346 170 33.0 3e-42 MKNLKEICKIAVVQAEPALFDKNACLDKAVKLIEEAAKKEAEFVVFPELFIPGYPYGMTF GFTVGSRNADGRCDWKLYYDNSILVPGEETEILSKVAKSAGVYLSIGVSERDSISDTLYN SNLIFSPVGKLLSVHRKLKPTGSERVVWGDANKGYFPVAGTPWGPVGSMICWESYMPLAR VALYEKGITIYISPNTNDNAEWQSTIQHIAIEGHCYFINCDMIIKKSSYPKSLKSQDEIL KLSEIVCRGGSSIVDPYGHYVVEPVWDREEILYADLDMSKVSMSRMEFDVCGHYSRPDVL KLSVDDR >gi|289656182|gb|ADCS01000008.1| GENE 51 49652 - 50161 466 169 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|299143357|ref|ZP_07036437.1| ## NR: gi|299143357|ref|ZP_07036437.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 169 1 169 169 301 100.0 7e-81 MYINMKNVNKARRTSKIEITIGVIILLFWSAGCITTSDLKVVLTIILMMLPGVWLIYSGN KKRVLCNYANEYSKYIRGDSDGEVLISTMAKSFKIDDEKLIKIIKKLIQKDYVMNFHLDL NEKPKLILYTDNEKVEFVEVYCTHCGATNKVKKGFVGNCSYCNSVIGKK >gi|289656182|gb|ADCS01000008.1| GENE 52 50177 - 50656 494 159 aa, chain - ## HITS:1 COG:BH4007 KEGG:ns NR:ns ## COG: BH4007 COG1576 # Protein_GI_number: 15616569 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus halodurans # 1 159 1 159 159 177 56.0 6e-45 MNINIIAVGRVREKYIRDGIDEFKKRLSAHAVVKIVEVSDESAPEKLSDNEIKQIKEKEA ERILKNIRETDYVITLEIKGEKVSSEKFADKLQKIQLSGNSTIDFIIGGSLGLAENISKR ANYKLSFSDMTFPHQLMRLILLEQIYRAFRIANGFPYHK >gi|289656182|gb|ADCS01000008.1| GENE 53 50653 - 51204 669 183 aa, chain - ## HITS:1 COG:PAB1720 KEGG:ns NR:ns ## COG: PAB1720 COG1335 # Protein_GI_number: 14521185 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Amidases related to nicotinamidase # Organism: Pyrococcus abyssi # 2 183 4 178 180 82 31.0 5e-16 MKTLIVVDCQNDFITGTLSCIGAKDAIKNIVNFINSNEVGEVCYSTDYHNKTNKSFEING GIWPVHCIAGEFGSEISNDFDEVQNKSFKPLSENLYRKGIDDEVEEYSAYYAKNENGKTI ADIVSDEFIVCGLASEYCVRETVLEFLNNGKNVKLFLNGVGYVNEDDHIKNIAELRKLGV EIV >gi|289656182|gb|ADCS01000008.1| GENE 54 51361 - 52545 1078 394 aa, chain + ## HITS:1 COG:AGl1972_1 KEGG:ns NR:ns ## COG: AGl1972_1 COG3919 # Protein_GI_number: 15891101 # Func_class: R General function prediction only # Function: Predicted ATP-grasp enzyme # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 18 378 16 373 428 76 24.0 1e-13 MKYKNKAVVLGTNYYIGLSVVRNLGRSGVKAVTVDYDENSHYGVSKYVKERLIAPHYKNE EEKCVEFLIEYAKKQAHKPVLFPTADLYVEFMEDNFDKLKEYYLWPNEQKGLYRSLMDKQ SLLQYTEPLGIKTPEIIPMNAENLYDRVTEELGYPCIVKPKDSMPFVNQYRSKVFFINSK EELIEKIELCKRDGQEVFVQRIVKGPETNCYSFDVYMDKNQNPVSYMTTNKIRQWPINFG ASTYAKQHYIPELYDICVPLFKSVKYRGFAEVELKRDERTNTIYLVEVNVRFVNFTELQC HMGMNTPMMYFLDSIGEEYSGVKVEKDMEVYWKYKYEDISAIRAYLKTKQMTIGQIIRDY RFSKVSSTWAWDDPKPGIQFFKWAIGHKLKKAEI >gi|289656182|gb|ADCS01000008.1| GENE 55 52685 - 53107 593 140 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|299143361|ref|ZP_07036441.1| ## NR: gi|299143361|ref|ZP_07036441.1| hypothetical protein HMPREF0629_00207 [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 140 1 140 140 223 100.0 4e-57 MDRKKIIFAVVAIACLGFYFMTRPKDNSVELPNSYDAQKITQLSDEIVTSLLVKDYEKIS EYAESSFKDKLNSDETESVSKIIDKAEKFESKSQVGIKGYKNDKGKILAMSITEAKFEKK SIEFRLFFNEKYELVAIYVK >gi|289656182|gb|ADCS01000008.1| GENE 56 53108 - 53992 898 294 aa, chain - ## HITS:1 COG:BS_yitS KEGG:ns NR:ns ## COG: BS_yitS COG1307 # Protein_GI_number: 16078175 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 4 280 5 281 283 161 34.0 2e-39 MTKIITDSGCDLSSDIIEELGIDILSIIVTNNGTEYRDIVDISSDKMFEMQRAGESFSTS QIPLYDYLVKFEELAKNNQDFIYISLSSGVTGCYNNSLLAIEELGKKYPGVKMKSVDSRC ASVGSGLMNYYAALAAKNGASFNQILEIIEYLKAHIKHIFTVFDMEHLYRGGRISRASNC VGKILNIRPLIEVRDGKLEVKELVKGNKKTYKRITEIIEKSTNRNSKNETIFIICGEKLE PAEELEENLAGKIDSNIKMQKVGCTIGAHTGPDIIGAAYLDADLPDELLKYLED >gi|289656182|gb|ADCS01000008.1| GENE 57 54136 - 56163 2602 675 aa, chain - ## HITS:1 COG:SPy2082 KEGG:ns NR:ns ## COG: SPy2082 COG2987 # Protein_GI_number: 15675840 # Func_class: E Amino acid transport and metabolism # Function: Urocanate hydratase # Organism: Streptococcus pyogenes M1 GAS # 3 674 5 676 676 1135 78.0 0 MINNNDIANAMKIKLEFDELPEMPKFQEGIRRAPDRGFRLSQEQTEIALKNALRYIPEKF HEELIPEFLEELTTTGRIYGYRFRPEGRIYGKPIDEYKGNCLEGKAMQVMIDNNLDFEVA LYPYELVTYGETGSVCHDWMQYRLIMKYLEEMTDEQTLVMESGHPLGLFKSRKNSPRVII SNGIMVGLYDNLEDWEIAEEMGVANYGQMTAGGWMYIGPQGIVHGTFNTILNAGRLKLGI PAEGDLSGKLFVTSGLGGMSGAQGKAGEIANAVAIVAEVDISRIETRLEQGWISKLAKTP EEAVKIAKEYLEKKEAMSIAYHGNIVDLLHYMNENNIHIDLLSDQTSCHNVYDGGYCPVG ISFEERTRLLAEDQDKFRKLVDITLKQHFEVIKALTAKGTYFFDYGNSFMKAIYDAGVKE ISKNGKDDKDGFIWPSYVEDIMGPLLFDYGYGPFRWVCLSGKHEDLVATDRAAMEAIDPT RRYQDRDNYNWIRDAEKNQLVVGTEARILYQDEEGRVNIALAFNKLVREGKVGPIMMGRD HHDVSGTDSPFRETSNIKDGSNVMADMAVQCYAGNAARGMSLIALHNGGGVGIGKSINGG FGLVLDGSERVDEIIKLSLSWDVMGGVARRNWARNEHAMETSIEFNGKHEDGHITIPYLT DEKLVKSAVAKIFNK >gi|289656182|gb|ADCS01000008.1| GENE 58 56400 - 57662 1383 420 aa, chain + ## HITS:1 COG:SPy2081 KEGG:ns NR:ns ## COG: SPy2081 COG1228 # Protein_GI_number: 15675839 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Imidazolonepropionase and related amidohydrolases # Organism: Streptococcus pyogenes M1 GAS # 1 420 8 427 428 557 65.0 1e-158 MIADKILYNLNEIFCPNDLGHPLRGAEMNEAKILKNGYIAISGEKILEVGEGDVPENLKG ENTEMVDLSGHIAAPGLIDCHTHLVYGGSRENEFSKKLNGVTYLEILAAGGGILSTQKAT RNSSFEELYKKTETLLNHMMYHGVTTVEAKSGYGLNWETEKKQMEVVKKLDKDLPIDLVS TFMAAHAIPQELKDNSDVFVDEVIDMLPKVVEEDLAEFCDVFCEKGVFTAKQSYKLLKAA AEHGLKTRIHSDEIESIGGCDVAADLKTTSAEHLMVISDEDIKKLADANVIGNLLPGTTF SLMADRFAPARKMIENGMAITLTTDSNPGSCPMANLQFIMQLGCLAMKLTPIEVYNAVTI NAAYSVARADKIGSLDAGKYADIAIFEAPNLDYTLYFFATNLCTEVYKKGQLVVKNRQRV >gi|289656182|gb|ADCS01000008.1| GENE 59 57802 - 58443 459 213 aa, chain - ## HITS:1 COG:no KEGG:FMG_1610 NR:ns ## KEGG: FMG_1610 # Name: not_defined # Def: hypothetical protein # Organism: F.magna # Pathway: not_defined # 1 212 31 242 243 251 70.0 9e-66 MLIDHVNNALITPMLDGEGFLLYISNVFSVLGRIVFPIFIFFIVEGFFKTSNRKKYLITL LMFGAISKVPFDMFTSRTYFDPYWNNMMFTLALCLITIWIIDSLKENIHNKVFWYVGSII IVVIFGFLAMKLSLDYDYHAIIVAYLFYIFYDKQLLGADLGYLSIIKELYSFLGFVMTIT YNGERGRQYKWLNYFFYPAHILILGILRFYLNI >gi|289656182|gb|ADCS01000008.1| GENE 60 58919 - 60253 1348 444 aa, chain - ## HITS:1 COG:CAC1435 KEGG:ns NR:ns ## COG: CAC1435 COG2265 # Protein_GI_number: 15894714 # Func_class: J Translation, ribosomal structure and biogenesis # Function: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase # Organism: Clostridium acetobutylicum # 13 443 16 454 456 366 43.0 1e-101 MAKSKIISGKVINVDFPNRCEILNGENRVSFKGAILGQEVEVKLTRRTKGKLLNILNISE LENENNCPHSEVCGGCTYQTMSYECELEYKKNLITKLFKENDIEFEKLEFISSPVHKAYR NKMEYTFSDEYKDGPLSLGLHKKNRFYEVVNTDECNIVNEDFNIIRKFTLEYFKDKLKPY NRMRHTGILRHLLIRRSSIGEVLVNLVTASSDFNFDEYFEELLKLGLSGKVVGIMHTIND SFSDAIVPEKIIQYYGVDYINEELLGLKFKVSCFSFFQTNTESAKVLYTLASNMLGDLDN KILLDLYSGTGTITQILGRKAKSALGIEIVKDAVESARKNAEINNLNNVKFICDDVFKAV KELEYKADVIVLDPPREGINPKAIDKIISFRPEKFLYISCNPITFVRDLKIFLESGYEII ELKALDQFPRTNHIEIISLLSRQN >gi|289656182|gb|ADCS01000008.1| GENE 61 60349 - 61176 1049 275 aa, chain + ## HITS:1 COG:YPO1952 KEGG:ns NR:ns ## COG: YPO1952 COG0726 # Protein_GI_number: 16122198 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted xylanase/chitin deacetylase # Organism: Yersinia pestis # 31 275 46 295 673 98 25.0 1e-20 MKNKIKILGFILLVLIVGLKVFFKDIITVGKGSIPVITYHSISDVNPQNNEYILETKKFE EMIEGLSKNGFTFLSLVDLENIINGNETLPKNPILVAFDDGYEDNYTTAFPILKKYNAKA AIFIIGSYVEKDGFLTWDQIQEMAESGYISFGNHSYNLHDQFLDGPNKGKTWMSAKLENE TDEEYYEKIKNDLIWNNALIYQRSSVFPTAIAYPGAMVNDAILNATKDAGITIGFIGGNK TASKLKNLDPYKIHRFHIKKSTDIQNMIRFLKSNN >gi|289656182|gb|ADCS01000008.1| GENE 62 61312 - 61542 464 76 aa, chain - ## HITS:1 COG:CAC2777 KEGG:ns NR:ns ## COG: CAC2777 COG0695 # Protein_GI_number: 15896032 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutaredoxin and related proteins # Organism: Clostridium acetobutylicum # 4 75 2 74 76 67 45.0 6e-12 MEKVVVYTSNTCPYCTMAKDYLREKEIPFEEKNVQTDKEARTELMAKGYTGVPVICIGAE EIVGFDKAKLESLLSK >gi|289656182|gb|ADCS01000008.1| GENE 63 61594 - 61950 523 118 aa, chain - ## HITS:1 COG:CAC2242 KEGG:ns NR:ns ## COG: CAC2242 COG0640 # Protein_GI_number: 15895510 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Clostridium acetobutylicum # 14 115 21 122 122 85 47.0 2e-17 MEYELKSDERKKLLEDITKFKNDERLLDSLSSIFKALGDPTRLKIIYALSKRPLCVTDIS ELLEMSQSSISHQLAILRSQELIRVKRIARKAIYSLDDEHVLSLFNDGYEHAEHKTRR >gi|289656182|gb|ADCS01000008.1| GENE 64 61950 - 62816 1178 288 aa, chain - ## HITS:1 COG:BS_ksgA KEGG:ns NR:ns ## COG: BS_ksgA COG0030 # Protein_GI_number: 16077110 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Dimethyladenosine transferase (rRNA methylation) # Organism: Bacillus subtilis # 7 280 8 287 292 256 53.0 5e-68 MERLYKPARLIELLNKYGFRFSKSLGQNFLIDGNIVRKIVDSAEISSNDNVLEIGPGVGT LTEELCLRAKKVVSIEIDNHLKELLKESLPYENVKIIFNDVLKTDLKKFTEQEFGGETFK VVANLPYYVTTPIISKLIEEDLNIESITVMIQKEVANRFSASPSTKDYGSLSVFIQFYSD VKYEFTVPKNVFMPKPNVDSAVVNLKIKKDLPDIDRDKLFKVVRAAFSKRRKTLINALSS YGFNIDKNEILKALSISNIDEKRRAETLSSEEFIVLSINLPSINIGGE >gi|289656182|gb|ADCS01000008.1| GENE 65 62800 - 63372 718 190 aa, chain - ## HITS:1 COG:CAC2987 KEGG:ns NR:ns ## COG: CAC2987 COG1658 # Protein_GI_number: 15896239 # Func_class: L Replication, recombination and repair # Function: Small primase-like proteins (Toprim domain) # Organism: Clostridium acetobutylicum # 9 184 1 176 185 152 51.0 4e-37 MRIQRGSIMIKEVIVVEGKDDITAVKSAVDAEIISTHGFGYGMKLIKTLQEINKRRGIII FTDPDYMGKKIRADLSKHLKGAKHAFLPQGKAKKKDNIGVENASAYDIKIAIENAKPEYE DSIIMFNERDLIMHGLSGSIGASEKREKVSEILKIGHGNSKQFLSRLNRFKITREEFENA VKVVENGKTI >gi|289656182|gb|ADCS01000008.1| GENE 66 63341 - 64108 886 255 aa, chain - ## HITS:1 COG:CAC2989 KEGG:ns NR:ns ## COG: CAC2989 COG0084 # Protein_GI_number: 15896241 # Func_class: L Replication, recombination and repair # Function: Mg-dependent DNase # Organism: Clostridium acetobutylicum # 1 254 2 252 253 231 48.0 1e-60 MIDSHAHLDDERFDYDRDIVINSLPERGIDLVYNIGADLNSSIASVELANMYENIRAVIG IHPHDAKSYSDEVEEKLIELAKNEKVRAIGEIGLDYYYDNSPRNIQVEVFKRQIELAHKL NLPIVIHSREAVQETFDIIKESKEKYPELVFLIHCFSQSVEMMREYIKLGCYIALGGAVT FKNARHPKEVALEIPLDRLLLETDSPYMAPVPMRGKRNEPMYIKYVAKEIANIRGIKVSE LVEITDANTKRFYND >gi|289656182|gb|ADCS01000008.1| GENE 67 64119 - 66092 2135 657 aa, chain - ## HITS:1 COG:CAC2991_1 KEGG:ns NR:ns ## COG: CAC2991_1 COG0143 # Protein_GI_number: 15896243 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA synthetase # Organism: Clostridium acetobutylicum # 2 542 4 535 536 648 58.0 0 MEKKYYLTTPIYYPSGNLHIGHTYCTVAADCIKKYKKLQGYDVFFTTGTDEHGQKIQQKA LEEGLEPKEYVDNIVVSIKELWSKMDIDYDAFIRSTDPEHEKNVQEIFKKLYEKGEIYKS QYEGHYCTQCEAFWTESQLKDGDKCPDCGRETHIEKEESYFFKLSKYRDRLLKYYEDHPD FIEPVSRKNEMINNFLKDGLDDLSVTRSSFDWGVKVPFDDKHIVYVWIDALSCYLSAIGY GTDNEKFEKFWPADVHLVGKEIIRFHTIIWPALLMALDLPLPEKIFGHGWILFDNDKMSK SKGNVIYPEPIIKLYGVDALKYFLLREFSFGSDGSFNREKFMQRLNSDLANDLGNLVSRI ISMIEKYNDGYIPSATVSEEVDEDLINIATTTMTKVDSAMEHFEFSVALEEIWNLIRRCN KYVDETTPWILAKDESNKPRLDSVLYNLAEALRITSVLINPFISETSREIRKSLRVKGEV KWEDSAIWGLTEAGEHVKNVGVLFPRLDVEKEFVRLNEENQKLAEEREREKQLWTKKSEP VEEVLEDETEECTIDDFKKIKIKVALVESVEDHPKADRLYLLNLKLGNERRTIVSSIKND FTKEYLTGKKLLVITNLKPAKFRGIESKGMLLAAESEDGKISLATIYEDLPDGTEIC >gi|289656182|gb|ADCS01000008.1| GENE 68 66289 - 66735 654 148 aa, chain - ## HITS:1 COG:MA3284 KEGG:ns NR:ns ## COG: MA3284 COG0589 # Protein_GI_number: 20092099 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Methanosarcina acetivorans str.C2A # 2 141 8 147 152 79 35.0 3e-15 MKILVPIDGSKISRKSVVAARDIGKKFGAKLIILTVIPETSIFEQYPTNFPYTLEIDKAN TERAEFVLSDVEKELSDYPYEVETFYTSGNPSGQICKFAEERDIDLIVMGNRGLGAFSRT LLGSVSNKVINQSKVSVLVVKNELELDK >gi|289656182|gb|ADCS01000008.1| GENE 69 66915 - 68222 1627 435 aa, chain + ## HITS:1 COG:BH1128 KEGG:ns NR:ns ## COG: BH1128 COG0733 # Protein_GI_number: 15613691 # Func_class: R General function prediction only # Function: Na+-dependent transporters of the SNF family # Organism: Bacillus halodurans # 6 435 10 451 453 232 37.0 1e-60 MAKKNEGFSSIIGFILVAIGLALGIGSLWRFPYIVGENGGAIFIFMYIAIILIIGIPLMT AEITIGYATQKTAIAAYQELAPKRKWYLAGYLHLTAALLILGYTSPIYAWIVKYVFASIQ GSFTGLSPEQVVKFFEGFSDNKSMVFLFFVVNLFLNILVITFGVQNGIERISKILLPLLF GIMTIIIVRALNLEGAREGLLFLFKPDPSKFTLNSVISCLGQAFFALGLAMLGSMVFGSY IKDKNENIFKSASVVCISLIFAGLAAGLMILPIVFATGLKPEQGVALTFLTLPNAFNLIP GGRFLSILFYFGFYIAAFTSSVGVLEAVVGLFMEKFDISRIKAILIAVVIILVISYLSIN YNSIFNFFDKIESNFILVIGCFIIAIFCGYVWGIDNTINAANIKSPFIKTWMILSLKYIS PIAIVVIFITQFIRF >gi|289656182|gb|ADCS01000008.1| GENE 70 68338 - 69042 1038 234 aa, chain - ## HITS:1 COG:alr4641 KEGG:ns NR:ns ## COG: alr4641 COG0450 # Protein_GI_number: 17232133 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peroxiredoxin # Organism: Nostoc sp. PCC 7120 # 36 217 13 193 203 169 45.0 4e-42 MSYCDRPVAKVQNTEAKEEILINQENIKEEKNMILVGKQAPSFTAPAYHKGEFKEINLED YRGQWVMLCFYPGDFTFVCGTEVSTVAAKNKEFEDLGVQVISVSVDSQFVHKIWNDNELS KIAGMDIPFPMIADSSGAIGELYGVYDSEAGVDVRGRFIIDPEGIIQGMEILTPPVGRNV EEAIRQIKAYQYVREAKGTEVTPAGWQPGAKTLKPGPELVGNVWKTWTVDELGK >gi|289656182|gb|ADCS01000008.1| GENE 71 69205 - 70299 1282 364 aa, chain - ## HITS:1 COG:CAC0090 KEGG:ns NR:ns ## COG: CAC0090 COG0726 # Protein_GI_number: 15893386 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted xylanase/chitin deacetylase # Organism: Clostridium acetobutylicum # 38 364 2 293 293 122 27.0 1e-27 MQNKNIDNKDFTDIKNLKNTRSTLTRDEMRKKRKIQARRRQMKRRRILFFVLVGLFVLII IKIVSSIFTSKPEKEINTSNLGSWYIAEIMREKSGKFDNSKAIPKNEQEMFLEAYNKATG VEKRLMPGTNHLISADEYAYDTKEIRSYIRGEKEYGGNDKLVFLTFDDGPNNTITPQVLD ILEKNNVHGTFFVVGKAIYEDHYDTLKRIVMDGNSIGLHSFSHDYDILYPEKNADTNKIL EEARLTLGRVQKVFGENFKVTPWRYPGGHMSWQGITPADQALEKMGMEWIDWNSLSGDAE QKKVRPTTVEGEVNYIAKSLHQNIHSNVAVVLMHDATNKQLTVDSLQSIINYFKENNYKF CILK >gi|289656182|gb|ADCS01000008.1| GENE 72 70414 - 72420 1770 668 aa, chain - ## HITS:1 COG:no KEGG:TherJR_2662 NR:ns ## KEGG: TherJR_2662 # Name: not_defined # Def: S-layer domain protein # Organism: Thermincola_JR # Pathway: not_defined # 1 665 1 711 716 84 20.0 2e-14 MKKFIAILLAAVLLIPGINSFANVASVQKPNEKEVIRLKKMFGITNDYKNFSFSTSESEE DIEPYKSKAFKTLSYFWYSDDKSVNIRTDKDGNIIDYYKYDDTKKGDSKFIEKKEVELLA ETFLKNLGNDISKSYKLKNSKIYLKSGHAELDYTRFVNKTEVLNDTINIQIDLKTREVNS YSRTYSSETFKDNSFPKKEKIISKEDSIKLQEDNNPVKLFYIVYKDENVEKSEMVYGQLK PFKPVDAIKASFVTDNIYHLGNNVFDSVAAAEEKTKGEAQGLSDVEISEFEKIKGIKDFS EVEKIIKANFNIKGYKQSLKRLSKSDERYIYSVEYSKDGKKYIQFAFDAKELVLMNYYYS DSSWKGNKKLDETVAIKLATDFANKFNTKKNIDFKNPIISDSDGETKVNFLRIENSIPVY GNGIQIVINNSSREISSYNFKFDDCKFEKSTPKINLEEAKKIFFDSFEYNLYYVYVGAVP KLMYMFDNYNTPIVRASDGKIVNTDGTVIESEKFEYENINSSKYAEEINYLTSMDIGIPG IKDLKSQITVEDFMVLLNLISGRGDHFEEISKSSLSFFEGADQDMLDKKIQTKYAVRWIL NNEGYRDLTKLKDVFDKKIFKDSASIPSEFKAYYYLGYALSIYDFDEAMPNSYITAEEAL HLAYNIVK >gi|289656182|gb|ADCS01000008.1| GENE 73 72619 - 74217 2056 532 aa, chain + ## HITS:1 COG:BS_ykpA KEGG:ns NR:ns ## COG: BS_ykpA COG0488 # Protein_GI_number: 16078507 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Bacillus subtilis # 1 532 1 533 540 692 64.0 0 MISVNNLSVLFPDKKLFDDVNLIFNPGNCYGIIGANGAGKSTFLKILSGEKDPTSGNVAI DKNSRMSKLNQDHYAFENEVVLDTVIMGNKKLYDIGKEKDAIYMKPDFSDEDGMRAAELE AEFAELGGYEAESEASTILQGLGISTDMHSKLMSEIIESDKVKVLLAQALFGNPDILLLD EPTNGIDLRAVLWLEEFLSTFEGIVIIVSHDRYFLNEVCTHMVDIDFGKITMFVGNYDFW YESSQLALKMQKDQNKKKEDKIKELQEFIQRFSANKSKSKQATSRKKLLDKITLDDIKPS SRRYPFVGFNLSREVGNEILNVNGLTVEDNGKKLIDNFNLRVNKDDKIGFIGNEIAITKF FEIVNSKTDDYTGEYKWGQTITHTYFPKDNNEYFENIDLNLIDWMRQYSEEQSEIFLRGF LGKMLFSGDEALKKANVLSGGERVRMMFSKMMIAPANVLVFDQPTNHLDLESIEAVNNGL INFKGNVLFTSLDHQFVSSVANRIIEFFDDGTYRDVSMGYEEYIEKYVVESK >gi|289656182|gb|ADCS01000008.1| GENE 74 74378 - 77878 4215 1166 aa, chain - ## HITS:1 COG:CAC2499_1 KEGG:ns NR:ns ## COG: CAC2499_1 COG0674 # Protein_GI_number: 15895764 # Func_class: C Energy production and conversion # Function: Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit # Organism: Clostridium acetobutylicum # 2 412 3 413 413 571 63.0 1e-162 MKKMMTMNGNTAAATVAYAFTEVAPIYPITPSSDMSELIDSWSANGKQNIFGEQVQVTEL QSEAGASGAMHGVLSAGALATSFTSSQGLLLMIPNMYKMSGELLPGVIHVAARALSTHAL SIFGDHQDVMACRQTGFAMMSSSSVQEILDLGAIAHLSAIKARIPFLHFFDGFRTSHEFQ KVEVVDYEDYKKLLDTEALQSFRMKSMNPERPYTKGTAQNPDIYFQATEASNLKYEGVLP IVEDYMKQLGELTGRKYKPFDYYGAEDAERIIIAMGSVNETIEETVDYLQGLGEKVGMIK VRLYRPFAKEALLREIPSTVKAIAVLDRTKEKGSPFEPLHLDILGAYSDNENKPVIVGGR YGLGSKNTTPSQIKAVFDNLKKETPKDRFTIGIIDDVTNTNLVIEEEIMTEPKDTIKCKF WGFGSDGTVGANKSAIKIIGDGTDMYAQAYFAYDSKKSGGVTISHLRFGKDPIKSTYLIT KPDFISCSKQSYVYNYHLLEGLKEGGTFLLNTIWNKEELSEKLPAAMKRELYDKKVNFYT INATDIAQEIGLGSRTNMIMQSAFFKLSEVLPIDDAVTRLKDSIKKTYGKKGDKIVNMNY QAVEMGLEGLVKVEIPEEWKNATEEEVKRDVPKYVAEILEPLNAQKGDETPVSAFIGVEE GIMPNGTTKYEKRGVAVNVPHWNKDNCIQCNQCSFVCPHAAIRPFLLNTEEVANKPAEFE TLAAKGKELAGLEYRIQVSVLDCTGCGNCADVCPAKEKALVMTPLGEELEEAKNWEYAMK VEPKEDLMPDNTVKGSQFKQPLLEFHGACAGCGETPYATLVTQLFGDRMLIANASGCSSI WGGSFPSTGYCTNKLGRGPAWASSLFEDNAEYGYGMALAVKKLRGTIKLHMEEYMKKNPN SECEETFKDWIANMKNPEKTKALKDAIVKFTENSDDEDLKEIYKLRDYIMKQSIWSFGGD GWAYDIGYGGLDHVMASGEDFNILVFDTEVYSNTGGQSSKATPRAAVAKFAAGGKRVRKK DLGAMLMTYGYVYVAQVAIGSNMNQVIKALKEAESYDGPAIVICYAPCINHGLLSGMGKS IAQEKKAVDCGYWHLYRYNPELIAEGKNPFILDSKEPKESFQAFLETEVRYTSLKKTFPQ IAQELFDMAEEDSKFRYERYKKLAEN >gi|289656182|gb|ADCS01000008.1| GENE 75 77902 - 78552 769 216 aa, chain - ## HITS:1 COG:no KEGG:TDE2199 NR:ns ## KEGG: TDE2199 # Name: not_defined # Def: racemase # Organism: T.denticola # Pathway: not_defined # 11 216 1 206 224 254 63.0 1e-66 MKVAVFAGTKVDTQMGVELLAEKKIEAMTFPMSESCEEQSKLQYFSKEELENLFIEKAKS AIDKGADKLLINCNSLSCAIDYKKIEELIKLEIITPLETYKSLPKGCNNIAIIGANGLSA YTIDKIIKESDETKNTISVGNMSIVQMIEAGFTPKEIVEGLNLDGFLNYLENIKIGKYKV DSIILGCTHFPYIRDELKKRTSLIIIDPAEKMLERI >gi|289656182|gb|ADCS01000008.1| GENE 76 78620 - 79813 1605 397 aa, chain - ## HITS:1 COG:FN1419 KEGG:ns NR:ns ## COG: FN1419 COG0626 # Protein_GI_number: 19704751 # Func_class: E Amino acid transport and metabolism # Function: Cystathionine beta-lyases/cystathionine gamma-synthases # Organism: Fusobacterium nucleatum # 4 396 3 395 395 553 67.0 1e-157 MENMENKGFSTRQIHSGYESNKYGALATPIYQTSTFIFDSAEQGGRRFALEEDGYIYSRL GNPTNAVIEKKLADLEGAEACVSTSSGMGAISSVMWSMLKAGDHVVAAKTMYGCTFALLN HGLSKFGVEVTFVDTRDLNNIKNAMKENTRLVYIETPANPNMYITDIEGAAKIAHEKENC LLVVDNTYCTPYIQRPLSLGADIVVHSATKYLNGHGDVIAGFAVGRKELIDQVRLVGVKD CTGAVLGPFEAFLINRGMKTLSVRMERHCSNAMKVAEFLEGHPAVAEVAYPGLKSFPQHD LAMKQMRLPGAMISFEVKGGKEVGTKLMNAVKLCTLAVSLGDAETLIQHPASMTHSPYTP EERKASDITEGLVRISVGLEDPEDIIADLKQALDSLL >gi|289656182|gb|ADCS01000008.1| GENE 77 79842 - 81194 1967 450 aa, chain - ## HITS:1 COG:FN1420 KEGG:ns NR:ns ## COG: FN1420 COG1757 # Protein_GI_number: 19704752 # Func_class: C Energy production and conversion # Function: Na+/H+ antiporter # Organism: Fusobacterium nucleatum # 5 431 2 428 445 454 59.0 1e-127 MNEKKNKANFVALIPFLVFIISYLGIGLKLIADGDPMGFYGFKSPIAVILGIICAFILIK GNINEKFDIFVRGCGDENIIIMCIIYILAGAFSTVSKAMGGVDATVNLGLSIIPPQFITV GIFIIACFISISTGTSVGTIVALGPIAVGFGENTSIPMALIVATLVSGAMFGDNLSVISD TTIAATRTQGVEMKDKFRTNISMAVPAMIITVILLVVFGQPETAPVAQTYEYDLIKVLPY VFVLVTAIAGMNVFVVLTLGTILSGVIGLSYGAFGLLEFTNNIYDGFVGMFEIFLLSMLT GGLAGLVTYGGGLDWLLNKIKSFIKGEKSAEVGIAAITALTDAATANNTVAIIIDGPIAR SIAEEYKVDPRRSASLLDCFGAIMQGFIPYGAQLLIAAQFTEGKLSPFDLMPLLWYQFAL AFFVILSIFVPFANGYLKKNPWNFEEWKPL >gi|289656182|gb|ADCS01000008.1| GENE 78 81223 - 82764 1311 513 aa, chain - ## HITS:1 COG:PA2449 KEGG:ns NR:ns ## COG: PA2449 COG3283 # Protein_GI_number: 15597645 # Func_class: K Transcription; E Amino acid transport and metabolism # Function: Transcriptional regulator of aromatic amino acids metabolism # Organism: Pseudomonas aeruginosa # 5 506 2 507 511 295 33.0 2e-79 MDIKRIKIMFHINRPHLTYDILTILRNYDISVISMEVYSNVIYLKVPYISEDMIESIRRE CEKVYGYDYMEEIDVMSFEEKDIELKGVLNLIGEGVIMLSSKGVVEYGNKIAFKHIENLE VGKYIFEFIDDVDLKNYIERKENNFMDKSIRNKNINISNYRFLLNVDRLYSEDGIFCGYL LTLKEINGDFSYDSLLTFEDIIGEDENFKRIVDIAKLYAYSDASILLTGESGTGKEMFAR AIHSESNRASKPFVGINCAAIPEELLESELFGYEPGSFTGANKTGKRGIFETANGGTVFL DEIGEMNYHLQAKLLRVLQEKKIRPIGSDREISLDVRIISATNRNLEKLIEDGNFRMDLF YRLNIFRIEIPPLRNRVEDIPLLTQYFLNVLSHRYSKGNIQIDESARQRLNSYNWPGNIR EMQNVLERAVVLSREGPITEEHITFDKTDSFDNLILNYEDLNSAVGTFEREFILKALREN KTIRATAKVLNVTHTLLLNRIKKYKIQDDEWRV >gi|289656182|gb|ADCS01000008.1| GENE 79 83125 - 83457 416 110 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299143384|ref|ZP_07036464.1| ## NR: gi|299143384|ref|ZP_07036464.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 110 1 110 110 168 100.0 9e-41 MGDNLKREDIIDLVYKISEDDLELLYIFMKRLSKDCKCYLKKDVYKNTAEDSQPLKTISK VKIPIENESEEYSDDFSENVPPEYEDSSDEELKKFLGDDYLERMMLWKVD >gi|289656182|gb|ADCS01000008.1| GENE 80 83490 - 84104 809 204 aa, chain - ## HITS:1 COG:MK1674 KEGG:ns NR:ns ## COG: MK1674 COG1394 # Protein_GI_number: 20095110 # Func_class: C Energy production and conversion # Function: Archaeal/vacuolar-type H+-ATPase subunit D # Organism: Methanopyrus kandleri AV19 # 7 201 11 207 232 100 37.0 2e-21 MATKTVPTKANLMATKSALEFARKGYDLLDKKRTVLIKEMMDLNKRAESLQDRIEKIFEQ SYSALEEATVTMGTEAIYEISKSMALEKPYEVISKSVMGVEIPEIKYRQDGLRTEYSFHK TTTAFDKASLDMHNIRYLIYELAQVETGVFRLAQEIKKTQKRANALNKIQIPKYESIVKE IENILSEKEREDFFRLKKVKDKKR >gi|289656182|gb|ADCS01000008.1| GENE 81 84094 - 85488 1574 464 aa, chain - ## HITS:1 COG:TP0528 KEGG:ns NR:ns ## COG: TP0528 COG1156 # Protein_GI_number: 15639518 # Func_class: C Energy production and conversion # Function: Archaeal/vacuolar-type H+-ATPase subunit B # Organism: Treponema pallidum # 5 457 6 455 480 539 58.0 1e-153 MKKEYLLLDKVDGSLIELSNLHRVSYDEVVKIKSADGKEDLVGQVVKIDGDSAIIQVFGE NLGVSTKNSKVIFEAHPFEIPLSNEILGRVFDGIGRPIDKGGDIYSDEFYNVNGRPINPV ARQYPRNFIQTGISSIDGLMTLIRGQKLPIFSGSGLPHNELAAQIVRQAKISSKSSDENF AIVFAAIGVKHDEADYFREAFKNAGVSEKVVMYINYADDPIMERLIVPKCALTAAEYLAY KEHNHVLVIMTDVTSYGEALREVSSSREEVPSRKGYPGHLYSDLAMLYERAGMIKDIDGS VTLIPILTMPNDDITHPIPDLSGFITEGQIVLSRDLNQSGVYPPVNVLPSLSRLMKDGIG EGYTREDHADLSSQLFASYSKVQEVRALAQIIGEEDLSELDKLYIKFGNEFENRFLTQKF DENRNIEDTLNLGWELLKILPVESLDRIDPKLKEKYLQGELNGN >gi|289656182|gb|ADCS01000008.1| GENE 82 85500 - 87263 2137 587 aa, chain - ## HITS:1 COG:MK1017 KEGG:ns NR:ns ## COG: MK1017 COG1155 # Protein_GI_number: 20094453 # Func_class: C Energy production and conversion # Function: Archaeal/vacuolar-type H+-ATPase subunit A # Organism: Methanopyrus kandleri AV19 # 4 582 7 587 592 635 55.0 0 MKNGLIKVINGPVVIGSNMADFKMREMVVIGDKKLIGEVVKIDGDLGTIQVYEETSGLKR DEQIISTGSPLSVKLGPGMIKNMFDGIQRPLTKIRSEYGNFMPEGIGLISIDEETLWDVK LSIKVGDRVEEGQIFATVPETAIITHRLLVPMGVNGTVIDVVPNGKYNIEKVVAKIEDDN GKIYELKMYQEWPVRIPRPIKERLPIDRLLVSGQRVFDVFFPIAKGGTAAIPGGFGTGKT MTQHQIAKYCDADIIVYIGCGERGNEMTEVLEDFPKLIDPNTGNPLMDRTILIANTSNMP VAAREASIYTGVTIAEYFRDQGYHVALMADSTSRWAEALREISGRLEEMPAEEGYPAYLP SRIAQFYERAGYVDTLSGDEGSVTLIGAVSPVGGDFSEPVTENTKRFVNVFLALDKELAY ARHYPAINWMNSYSQYVSLLKNYYDMHLDGDLDILRSKFLDLLHQEAKLNEIVMLVGEDV LPDNQRLILEICRVVKVGFLQQNAFNKIDTFVPLTKQFEMLKTIDLLYECGKAAADNHLP ISKIKDDTLYSRVINMKYDIENDHLEKFVELNNSIRDYYANLEAVYE >gi|289656182|gb|ADCS01000008.1| GENE 83 87260 - 87886 842 208 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|299143388|ref|ZP_07036468.1| ## NR: gi|299143388|ref|ZP_07036468.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 208 1 208 208 319 100.0 8e-86 MILLENKIAIFNKIVYLETQKKCNEKLLRVREKCNQLILNKEKELSKMKSDLIKKKEDLA KQKSYEMIAKVNEDRRVLELQKDEELLNKLIDELAMKMEKFTETNEYVIFEESRFETVTD DFGSGEYIVSILDEDREKLIPIFEKIAGRKAMKLSFETLPKKLIGGFTISDEGRTYNVDC SLREKVEDSKYEIGKLLHFTLKKAGEKN >gi|289656182|gb|ADCS01000008.1| GENE 84 87897 - 88205 303 102 aa, chain - ## HITS:1 COG:no KEGG:FMG_1168 NR:ns ## KEGG: FMG_1168 # Name: not_defined # Def: V-type sodium ATP synthase subunit F # Organism: F.magna # Pathway: Oxidative phosphorylation [PATH:fma00190]; Metabolic pathways [PATH:fma01100] # 1 101 1 101 102 89 48.0 3e-17 MKSLIISRSMDILTWLRLAGVEGFFCRNSDELKRNFKNCKDDETLGIIILTESDFKEIEE DVIKVKLSKKLPLVVTIPDKGGLKDKDFILKYVKESVGVKIS >gi|289656182|gb|ADCS01000008.1| GENE 85 88205 - 88624 603 139 aa, chain - ## HITS:1 COG:no KEGG:FMG_1169 NR:ns ## KEGG: FMG_1169 # Name: not_defined # Def: V-type sodium ATP synthase subunit K # Organism: F.magna # Pathway: Oxidative phosphorylation [PATH:fma00190]; Metabolic pathways [PATH:fma01100] # 1 139 1 139 139 102 49.0 3e-21 MEKIIILAVLSVVSVMAYGAYLIYKGTPASEKAVRRLIKINLSIVVPVLIFSIITLVPQM VSARETATSGNGLGFLAAGLSTGLAALGAGVAVANVGSSAIGAVSEDPKILGKSMIFLGL ADGIAIYGLIISIMILGRL >gi|289656182|gb|ADCS01000008.1| GENE 86 88626 - 90572 2398 648 aa, chain - ## HITS:1 COG:APE0673 KEGG:ns NR:ns ## COG: APE0673 COG1269 # Protein_GI_number: 14600881 # Func_class: C Energy production and conversion # Function: Archaeal/vacuolar-type H+-ATPase subunit I # Organism: Aeropyrum pernix # 240 644 227 675 686 121 26.0 4e-27 MAVEKMKMMDVVGQLSDMDSIIVDVLKTKAVNIVNTRLEIDNNFFTFSLEDENNLERNME LNYIQPFEKDSLRELNVKRAKELMNFFGIDSIDEKYVKDVDMNADFDSFYDKLKTKIDRL EKINEDLKIISGIKNNYELFKNVNVNLSDLANLKYFKARFGILDKDGRFRLKKNYGNILA MIFHTGTINENEVYLALYPQEVSNEIDRILKSLNWQDVNILGKYCGTAQEIFEKLMSEHE ILVGEKKEIENFRNSLIQNEEDRVKRYIAGMLLAEKIEDVKKYMAKSKKYFYMSGWIGVS DVENIKSVFSKYDNIDVNFRDPEKGESIPTKLVNANFFKPFELLLKMYGTPGYNESDPTV FFGITYMILFGAMFGDLGQGAIFFLLGLYIGKRGNKGYGAILSRLGASSMVFGVLYGSVF GNEELIPAMWMKPFESINDALAGAIVFGIGLLFVSYVIGFINRIKVKDYEDAFFGKDGLC GFAIFLLAINLGLSAIKNISIVPKKLTLILIVVALVLMIFKRPITQFLKGEKISYEDGNM SGYYIEGVFLLLEALMSILSNIISFIRVGAFAINHVGLFMAFQTVGKMINNSAGNFVILV IGNLVIIGLEGLLVFIQSLRLEYYEMFSKYYLGDGYEFIADKIELKEF >gi|289656182|gb|ADCS01000008.1| GENE 87 90573 - 91610 804 345 aa, chain - ## HITS:1 COG:MJ0219 KEGG:ns NR:ns ## COG: MJ0219 COG1527 # Protein_GI_number: 15668392 # Func_class: C Energy production and conversion # Function: Archaeal/vacuolar-type H+-ATPase subunit C # Organism: Methanococcus jannaschii # 5 337 53 397 399 62 22.0 1e-09 MRINSKFAVINAKIDSLYSKLLMNTDYIKLAHCNDVHEIIAYLKENTDIGSIFDSYDTVY DIELKMQRYKIEQIRKFSYYFSGNYKRFLNSLLSEFEISDIKKILRVLQRNNGLNNLRSS LIVLGDDSRFKIDTDNTIPTFVEKLKNTKYYKVLQAYEDEVSDVILFYMEMNLDKFFYTE LINSTKDFDKTDLECSRKLYGRKVDLLNITWIYRGLKYYKILPEELINFCILGGCDFSYE NLRDLCYCENEEEFVNRILKTEYKFLFEGENTELYMDRRINRYLYYNAKKEFRRSNFDIG KFLAFMFLLEYEIKDIGAVIEATRFDISFEETLKYLVRSYKGSEL >gi|289656182|gb|ADCS01000008.1| GENE 88 91613 - 91933 398 106 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|299143393|ref|ZP_07036473.1| ## NR: gi|299143393|ref|ZP_07036473.1| putative DNA mismatch repair protein MutS2 [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 106 13 118 118 103 100.0 3e-21 MKETIESIIDIDNRTEELVKQTDLEEERLREELRKKLTDMESKANNEAKIKAQEIFDKII SEAGLEVERRKLENSKRLKKIDENYENNKDYLIEKAFDKIILSKDD >gi|289656182|gb|ADCS01000008.1| GENE 89 92043 - 92615 597 190 aa, chain - ## HITS:1 COG:BS_yubE KEGG:ns NR:ns ## COG: BS_yubE COG1705 # Protein_GI_number: 16080164 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Muramidase (flagellum-specific) # Organism: Bacillus subtilis # 30 185 38 198 282 113 42.0 2e-25 MSKKRKRRKGNTGFFFFSGFIFIVLVFLVISKRENKIDEKLVYIEETKYLAIQTAKKYNL FASVILAQSALESNFGNSELSKKYNNYFGIKATSKSDYVEMNTSEFYDDEEKILKQSFRV YKSKSESFKDYGTLISKAGRYEKVRDAQNPYDAAKALQKSGYATDPSYAEKIISIIEKYN LEELDGEIID >gi|289656182|gb|ADCS01000008.1| GENE 90 92608 - 93927 1140 439 aa, chain - ## HITS:1 COG:CAC0707 KEGG:ns NR:ns ## COG: CAC0707 COG1508 # Protein_GI_number: 15893995 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog # Organism: Clostridium acetobutylicum # 2 437 5 464 464 213 32.0 4e-55 MLKLDLSLIQKLNLTTELIQSIELMELNSIELESFLERESEENVLIDYESKIEDESFRNY LKKLRENKSVKFYRDDEDVKPEDYTKAPVILSDVLIEQLGMINLSKSEYQIGKFLIENIG DDGYLDVDIQEAAKILKTEVHDVFYVLRKIWEFEPKGVGARNLKECLLMQTDAHDTILKN IIEYHLEDIYKNRLPSIAKSQGIGLAELNEYIEKIKKLNPKPGRGYAANKLPTVYLKPEI FVNTDTENIEIEIDEQVSNIQVNKFYLDMLESDIDEETKKYLKQKLTRTLFLIDALEKRR NTIKRVVTEIVKYQRNFFIHGFSLEPMTLSDIANALNISESTVSRATKNKYLECSFGVFP LKYFFTKPLKFSTGKVSRDYIMKKIEDIILNEDSKNPLSDKAITDMLNKTGIEIKRRTVA KYRDELKIAPASNRRRYDE >gi|289656182|gb|ADCS01000008.1| GENE 91 94061 - 94972 933 303 aa, chain + ## HITS:1 COG:no KEGG:Apre_1219 NR:ns ## KEGG: Apre_1219 # Name: not_defined # Def: hypothetical protein # Organism: A.prevotii # Pathway: not_defined # 2 303 3 305 307 223 43.0 5e-57 MLTQMFEFEKSKNKIPYDILHKNIPIKMSKELIEAIEYLLWYVPDIASIQSRENELVSNF LYDDFTFEEIMKYMHLRDEDVLFTEQIDFYTENFYKYEICPNFQKLILTKSSDETKTGSL LRHIRNSIAHGYFTIVENLLIGFDYKFVTGKREECKAIFKIKPSNLLYALKNLDTELTEE RLVKTALETCGYEVKYYEDNNELYDKFDLFARRADRKYAVEIKKYKKKKYINERDVRYIL ELFKDVYKNVQPVLVINTSLLTEKAKQELLKRSIIILDVKNIKKLLSGRDMLFEIERDRK YKN >gi|289656182|gb|ADCS01000008.1| GENE 92 95085 - 95327 336 80 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 [marine gamma proteobacterium HTCC2080] # 2 80 329 407 407 134 79 2e-30 KEGGRHTPFFNGYRPQFYFRTTDVTGDIQLAEGVEMVMPGDNSTFTVTLITPIAMDEGLR FAIREGGRTVASGVVSKIIE Prediction of potential genes in microbial genomes Time: Fri May 27 07:18:42 2011 Seq name: gi|289656181|gb|ADCS01000009.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.9, whole genome shotgun sequence Length of sequence - 8994 bp Number of predicted genes - 9, with homology - 9 Number of transcription units - 6, operones - 3 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 1 - 291 401 ## PROTEIN SUPPORTED gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 - Prom 318 - 377 7.1 2 1 Op 2 . - CDS 388 - 1716 1558 ## COG0534 Na+-driven multidrug efflux pump - Prom 1858 - 1917 10.3 - Term 1875 - 1924 6.8 3 2 Op 1 1/0.000 - CDS 1972 - 3405 1594 ## COG2195 Di- and tripeptidases 4 2 Op 2 . - CDS 3402 - 4061 626 ## COG1309 Transcriptional regulator - Prom 4101 - 4160 8.2 + Prom 3868 - 3927 9.6 5 3 Tu 1 . + CDS 4167 - 5579 1847 ## COG1288 Predicted membrane protein + Term 5815 - 5883 30.4 + TRNA 5797 - 5872 82.3 # Thr GGT 0 0 + Prom 5801 - 5860 80.4 6 4 Op 1 . + CDS 5997 - 6479 516 ## Bsph_2052 hypothetical protein + Term 6480 - 6512 4.2 + Prom 6612 - 6671 9.3 7 4 Op 2 . + CDS 6779 - 8185 1541 ## COG1966 Carbon starvation protein, predicted membrane protein + Term 8269 - 8308 2.3 - Term 8319 - 8363 9.3 8 5 Tu 1 . - CDS 8368 - 8760 581 ## COG1394 Archaeal/vacuolar-type H+-ATPase subunit D - Prom 8834 - 8893 7.6 + Prom 8793 - 8852 8.2 9 6 Tu 1 . + CDS 8880 - 8994 94 ## COG0550 Topoisomerase IA Predicted protein(s) >gi|289656181|gb|ADCS01000009.1| GENE 1 1 - 291 401 97 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 [marine gamma proteobacterium HTCC2080] # 1 97 1 96 407 159 79 9e-39 MAKAKFERTKPHVNIGTIGHVDHGKTTLTAAITLVLSKKFGGGEFVDYAHIDKAPEERER GITISTSHVEYETANRHYAHVDCPGHADYVKNMITGA >gi|289656181|gb|ADCS01000009.1| GENE 2 388 - 1716 1558 442 aa, chain - ## HITS:1 COG:MA2050 KEGG:ns NR:ns ## COG: MA2050 COG0534 # Protein_GI_number: 20090897 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Methanosarcina acetivorans str.C2A # 1 429 8 439 468 207 34.0 4e-53 MGYKPMGKLLIEMSLPIMLSMFIQALYNIVDSRFVSQINENAFTAVSIALPIQNLMIGVG VGAGVGVNALLSRSLGEKNNRQANLAAENGFFLCIIHSIVFVLFGLFLSRIYYSMQTTNI AVINYGSEYISICTIFSIGIFTQIMTERILQSTGRTIIAMISQIIGAVINIILDPIFIFG LFNVPAFGVKGAAIATVIGQVLGAIIAVTLNYKYNADVEIKRIFPDINTIRKIYIIGVPS MILIAIGSVAIYLLNGILDRFSTTAVAALGAYFKVQSFIFMPIFGLTNGMVPVLAYNYGA GNSERAKKVVDLSLKSGILFMTFGFLIFQIFPKQLLGIFNASDKLIEIGVPMLRIISTAF MMAGYNIVSGSTFQALGNGMLSLMSSVVRQLLVLLPVAYIFAAMGNLTLVWCSYPIAEIA DFLFCKYYLKNFAINKIESLNY >gi|289656181|gb|ADCS01000009.1| GENE 3 1972 - 3405 1594 477 aa, chain - ## HITS:1 COG:FN1804 KEGG:ns NR:ns ## COG: FN1804 COG2195 # Protein_GI_number: 19705109 # Func_class: E Amino acid transport and metabolism # Function: Di- and tripeptidases # Organism: Fusobacterium nucleatum # 2 473 12 483 486 359 41.0 7e-99 MNEILNNFDKISKIPRKSHSEEKIRDYMYDWAKERGIYVEKDDYRNIFMRKSASKGYENY PAIALQAHTDMVCEKADGVVHNFAEDAIKYYIDGDIVSTRGTTTLGGDNGLGVSAIMAIF EDNTLEHPEIEAILTSSEEEDFYGAENFDVSKLNCKYLINLDHCNENEILCASAGGVVFT AYKNIDFVDVGEMYVPYEIKISGLKGGHSGEDIHRGRGNSSILLFRFLNYISDLDFYLNS VKGGSYRLAIPRDSKVVVMLNKDQYSTLLEKLNEFNILISEEFQKYKGKIKIEVDSIEIE DKKCMSKEIFSNILDYILVSPVDVQIMSNVFENMVDCSCNLGEIYIEDSKIILISDIRAS FNSQKEFILEKLKKLTKAFGLEYEVWGDYFNWKFKSDSKLRELVKKVYAEKGIENVKELS VHAGLECGFFINKKPELDVVSIGPNSWNFHSPKEAFSIKSTNTFYNCLVEILKQAKF >gi|289656181|gb|ADCS01000009.1| GENE 4 3402 - 4061 626 219 aa, chain - ## HITS:1 COG:FN1803 KEGG:ns NR:ns ## COG: FN1803 COG1309 # Protein_GI_number: 19705108 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Fusobacterium nucleatum # 3 203 5 205 217 138 40.0 7e-33 MKNLKEKRMMTYYINATREIIDEFGFEEVSIRKIADRSGYNSATLYNYFKNLEVLLIYAS IGYLEDYIIELRSRLKEVKTPKEKYIMVYKVFNEFSFKNPDIYFNMFYGNQSKYLPEIIK DYYEIFPEELGSNADEDINDMLREGNIFQRDFKVTKSFLKENLLKEDDIAFLVSVVVRVH ATYLYEVIYDKEIEIGKHSEKFLIFMEKLIDSLMKGRVK >gi|289656181|gb|ADCS01000009.1| GENE 5 4167 - 5579 1847 470 aa, chain + ## HITS:1 COG:BH2308 KEGG:ns NR:ns ## COG: BH2308 COG1288 # Protein_GI_number: 15614871 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Bacillus halodurans # 5 469 13 469 470 282 34.0 1e-75 MEKTKKQKKFKFPDALVLIVILLIVVSFATYVLPTGEYTRVLNPITEIEIVDPTSYHAID KNPVSLWGVLQSIPRGLNESAEIINFLFIIGGTFGVLKGTGALDSLLQVALMKLKGRERL VIPIVLTFWGLGGAIVGNFEECLAFLPLQITLCLALGFDSITGVALGMCGVGIGYMGAIL NPFTVATAQNIAEVPLFSGMGLRIVSFAILLIITVSYVYIYAGKIHKNPQSSLVYESDLK SPFRENELLEGEFNFTSKQKLSLLVFLLGLIALVYGVLVYEFYLGEIAAIFMAVAIICGL VGGLSLNETVDNFVKGAGNLLYAGLCVGFARAITVIMQDGNILDVIVHSFSKLVFDLPLQ ISAVGMFLFQSFINVFIPSGTGQAVVSMPIMTPLADVIGLTRQTAVMAFQFGDGITNLIT PTSGDLMAALAIGGIVYGKWMKWIWKLLLMWYVACSLILMVATVIHYGPI >gi|289656181|gb|ADCS01000009.1| GENE 6 5997 - 6479 516 160 aa, chain + ## HITS:1 COG:no KEGG:Bsph_2052 NR:ns ## KEGG: Bsph_2052 # Name: not_defined # Def: hypothetical protein # Organism: L.sphaericus # Pathway: not_defined # 1 113 1 114 158 65 32.0 6e-10 MNLKDLTKNAIVMAIYIIFISINPIGFGALQFRIGEVFALIPFFNRKYVPALVLGGILAN FASPFGAIDMVVGGVCAVITYTISKFIKNPYVNGLVYSIVSAVVVSSEIYYLSIGEIAKS DAFGFIITNIATIFFTMIIITQLGVYIIDKTKLKDIIKNS >gi|289656181|gb|ADCS01000009.1| GENE 7 6779 - 8185 1541 468 aa, chain + ## HITS:1 COG:MA1905 KEGG:ns NR:ns ## COG: MA1905 COG1966 # Protein_GI_number: 20090754 # Func_class: T Signal transduction mechanisms # Function: Carbon starvation protein, predicted membrane protein # Organism: Methanosarcina acetivorans str.C2A # 1 443 1 448 479 461 57.0 1e-129 MITFFIALFILIAGYFIYGKFVEGIFGPTDEPTPALSHGDGIDYVPMSTPKVFLIQLLNI AGLGPIFGALAGAQWGPTVFLWIVFGTILAGAVHDFMCGMISIRHNGASISEITGIYLGD TMKNVMRVFSVVLLVLVGTVFATGPAKLLSMLNTGLSAKVWLIIILVYYFLATLLPIDKV IGKLYPIFGLCLIIMCIGVGGGILIKGYHIPEMTLANLHPKNTPIWPFMFITVACGAISG FHATQSPMMARCIKTEKDGRKVFYGAMVAEGIIALIWAAAGVAFYGSTGGLSNALAESTQ NGVVYEICKTLLGPVGSVLAMIGVIACPITSGDTAFRSARLTIADWFNIGQKDGKKRLLL TAPLLIVGALLSQIDFNIIWRYFSWSNQTLAMIALWAASAYLLKNKKNYYITMIPATFMS AVTSTYILIAPEGFKLPISIAYPAGILFAVCCLAAFLNSTKKLKAELK >gi|289656181|gb|ADCS01000009.1| GENE 8 8368 - 8760 581 130 aa, chain - ## HITS:1 COG:FN1733 KEGG:ns NR:ns ## COG: FN1733 COG1394 # Protein_GI_number: 19705054 # Func_class: C Energy production and conversion # Function: Archaeal/vacuolar-type H+-ATPase subunit D # Organism: Fusobacterium nucleatum # 1 114 99 210 211 116 62.0 9e-27 MSVEIPQMEFKTEKLTEDGSLYPYGYAQTTADLDEAIDKLSYVMDKLLRLAQLEKSTQLM ADEIEKTRRRVNALEYKTIPDLKDTIKYIVGKLDENERANITRLMKVKDIISKEESKETK REVDVETLTV >gi|289656181|gb|ADCS01000009.1| GENE 9 8880 - 8994 94 38 aa, chain + ## HITS:1 COG:SA1093_1 KEGG:ns NR:ns ## COG: SA1093_1 COG0550 # Protein_GI_number: 15926833 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Staphylococcus aureus N315 # 1 38 1 38 571 60 76.0 9e-10 MAKNLVIVESPTKAKTIKKMLGSTYKVVASVGHIRDLP Prediction of potential genes in microbial genomes Time: Fri May 27 07:18:54 2011 Seq name: gi|289656180|gb|ADCS01000010.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.10, whole genome shotgun sequence Length of sequence - 28702 bp Number of predicted genes - 30, with homology - 28 Number of transcription units - 10, operones - 6 average op.length - 4.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 2 1 Op 2 16/0.000 - CDS 509 - 1882 2306 ## COG1156 Archaeal/vacuolar-type H+-ATPase subunit B 3 1 Op 3 12/0.000 - CDS 1875 - 3644 2199 ## COG1155 Archaeal/vacuolar-type H+-ATPase subunit A 4 1 Op 4 13/0.000 - CDS 3658 - 3966 356 ## COG1436 Archaeal/vacuolar-type H+-ATPase subunit F 5 1 Op 5 11/0.000 - CDS 3959 - 4954 1108 ## COG1527 Archaeal/vacuolar-type H+-ATPase subunit C 6 1 Op 6 11/0.000 - CDS 4964 - 5518 615 ## COG1390 Archaeal/vacuolar-type H+-ATPase subunit E 7 1 Op 7 16/0.000 - CDS 5530 - 6003 832 ## COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K 8 1 Op 8 . - CDS 6005 - 7948 2131 ## COG1269 Archaeal/vacuolar-type H+-ATPase subunit I 9 1 Op 9 . - CDS 7935 - 8261 436 ## gi|299143414|ref|ZP_07036494.1| V-type sodium ATP synthase subunit G - Prom 8305 - 8364 13.3 + Prom 8493 - 8552 9.9 10 2 Tu 1 . + CDS 8615 - 8749 127 ## 11 3 Op 1 . - CDS 8822 - 10036 1326 ## COG0019 Diaminopimelate decarboxylase - Prom 10069 - 10128 3.2 12 3 Op 2 . - CDS 10130 - 11173 1095 ## COG1316 Transcriptional regulator 13 3 Op 3 . - CDS 11183 - 11428 373 ## gi|299143417|ref|ZP_07036497.1| sigma-K factor processing regulatory protein BofA - Prom 11491 - 11550 10.7 + Prom 11478 - 11537 9.2 14 4 Tu 1 . + CDS 11559 - 11822 380 ## COG4545 Glutaredoxin-related protein + Term 11995 - 12039 4.1 - Term 11687 - 11738 4.0 15 5 Op 1 . - CDS 11837 - 12487 689 ## Amuc_1957 membrane protein-like protein - Prom 12509 - 12568 4.9 16 5 Op 2 9/0.000 - CDS 12574 - 13482 822 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily 17 5 Op 3 . - CDS 13475 - 14380 617 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily - Term 14408 - 14439 2.5 18 6 Op 1 . - CDS 14456 - 16459 2599 ## COG3808 Inorganic pyrophosphatase 19 6 Op 2 . - CDS 16470 - 16694 421 ## gi|299143423|ref|ZP_07036503.1| preprotein translocase, SecG subunit - Prom 16824 - 16883 11.3 - Term 16868 - 16909 3.6 20 7 Op 1 . - CDS 16912 - 17775 916 ## COG1968 Uncharacterized bacitracin resistance protein 21 7 Op 2 16/0.000 - CDS 17790 - 19124 1609 ## COG0305 Replicative DNA helicase 22 7 Op 3 9/0.000 - CDS 19124 - 19570 390 ## PROTEIN SUPPORTED gi|227902056|ref|ZP_04019861.1| ribosomal protein L9 23 7 Op 4 . - CDS 19567 - 21567 738 ## PROTEIN SUPPORTED gi|85057286|ref|YP_456202.1| exopolyphosphatase-related protein 24 7 Op 5 . - CDS 21581 - 22501 665 ## gi|299143428|ref|ZP_07036508.1| hypothetical protein HMPREF0629_00275 - Prom 22657 - 22716 8.4 + Prom 22473 - 22532 11.2 25 8 Tu 1 . + CDS 22634 - 23377 946 ## COG1414 Transcriptional regulator + Term 23391 - 23449 9.9 - Term 23387 - 23427 5.1 26 9 Op 1 . - CDS 23445 - 25481 2705 ## COG4666 TRAP-type uncharacterized transport system, fused permease components 27 9 Op 2 . - CDS 25474 - 25995 645 ## Clos_0677 hypothetical protein 28 9 Op 3 1/0.000 - CDS 26014 - 27024 1483 ## COG2358 TRAP-type uncharacterized transport system, periplasmic component - Prom 27062 - 27121 11.2 - Term 27374 - 27411 2.1 29 9 Op 4 . - CDS 27436 - 28311 981 ## COG0796 Glutamate racemase - Prom 28341 - 28400 12.8 + Prom 28126 - 28185 7.8 30 10 Tu 1 . + CDS 28359 - 28613 82 ## Predicted protein(s) >gi|289656180|gb|ADCS01000010.1| GENE 1 2 - 500 592 166 aa, chain - ## HITS:1 COG:FN1733 KEGG:ns NR:ns ## COG: FN1733 COG1394 # Protein_GI_number: 19705054 # Func_class: C Energy production and conversion # Function: Archaeal/vacuolar-type H+-ATPase subunit D # Organism: Fusobacterium nucleatum # 1 166 1 164 211 171 63.0 5e-43 MTKLNINPTRMNLSMLKKRLITSSRGHKLLKDKQDELMRRFIEIVKENKRLREEVEAELS KSFKDFLLASAFMSPEMLEAAVTFPTQKTNLEITTKNVMSVEIPQMEFKTEKLTEDGSLY PYGYAQTTADLDEAIDKLSYVMDKLLRLAQLEKSTQLMADEIEKTR >gi|289656180|gb|ADCS01000010.1| GENE 2 509 - 1882 2306 457 aa, chain - ## HITS:1 COG:FN1734 KEGG:ns NR:ns ## COG: FN1734 COG1156 # Protein_GI_number: 19705055 # Func_class: C Energy production and conversion # Function: Archaeal/vacuolar-type H+-ATPase subunit B # Organism: Fusobacterium nucleatum # 1 454 1 454 458 770 82.0 0 MLKEYKSVTEVVGPLMVVEGVEGVSYEELVDIELQTGEKRRGRVIEIDGDKAMVQIFEGS SGINLQETSVRFLGRPLELGVSPDMIGRVFDGLGQPIDDGPRIIPNAKIDINGSPINPVS RDYPSEFIQTGISTIDGLNTLVRGQKLPIFSGSGLPHNNVAAQIARQAQVRGSNEKFAVV FTAMGITFEEAQFFIDDFKETGAIDRAVLFMNLADDPAIERLATPKMALTCAEYLAFELG MHVLVIMTDMTNYAEALREISAARKEVPGRRGYPGYLYTDLAGIYERAGRIKGRNGSITQ IPILTMPEDDITHPIPDLTGYITEGQIILSRQLYKQGLEPPINAIPSLSRLKDKGIGKGK TREDHADTMNQIYAAYTSGKEAKELSVILGDSALSDADKAFAKFSDEFEKRYVNQGYYTN RAIEETLELGWELLRLIPRAELKRIKDELLDIYLQKD >gi|289656180|gb|ADCS01000010.1| GENE 3 1875 - 3644 2199 589 aa, chain - ## HITS:1 COG:SP1317 KEGG:ns NR:ns ## COG: SP1317 COG1155 # Protein_GI_number: 15901171 # Func_class: C Energy production and conversion # Function: Archaeal/vacuolar-type H+-ATPase subunit A # Organism: Streptococcus pneumoniae TIGR4 # 1 570 1 571 591 736 63.0 0 MKSGRVIKVSGPLVVASGMENANVYDVVEVSEKKLIGEIIEMRGDKASIQVYEETTGIGP GDEVVSTGYPLSVELGPGLIEQMFDGIQRPLEALKDTTGDFLVKGAEVQKLNREKKWEFK PTVNVGDEVSEGDVIGTVEETPIVLHKIMVPIGVSGKVLKISEGKHTVDEIICVLETENG QKELNMIQKWPVRRGRKVTKKIDPTTPLVTGQRVIDTFFPITKGGTAAIPGPFGSGKTVV QHQLAKWADAQIIVYVGCGERGNEMTDVLMEFPELIDAGTGQSLMKRTVLIANTSNMPVA AREASIYTGITISEYYRDMGYSVAMMADSTSRWAEALREMSGRLEEMPGDEGYPAYLASR VAEFYERAGRVICLGSDKREGALSVIGAVSPPGGDISEPVSQSTLRIVKIFWKLDYDLSY RRHFPAINWIDSYSLYQAKMDKYFNENVDRDFSKNRIRAMTLLQEETGLQEIVRLVGRDS LSESDQLKLEITKSIREDFLQQNAFHDIDTYCSLDKQNKMMKAILKFYDCAIDALQNGVY LSEISSMPIRERIARAKNVSESELVKLDELILDIEREMKELRIGGTINA >gi|289656180|gb|ADCS01000010.1| GENE 4 3658 - 3966 356 102 aa, chain - ## HITS:1 COG:FN1737 KEGG:ns NR:ns ## COG: FN1737 COG1436 # Protein_GI_number: 19705058 # Func_class: C Energy production and conversion # Function: Archaeal/vacuolar-type H+-ATPase subunit F # Organism: Fusobacterium nucleatum # 1 102 4 105 105 127 64.0 7e-30 MYKIAVVGDKDSILAFKALGIDVVVAYEEDEARQKVDFLAQNGYGIIFITEQLAEKIEET IKRYNNKVTPAVILIPSNRGTLNIGMNNINKYVEKAVGSNIL >gi|289656180|gb|ADCS01000010.1| GENE 5 3959 - 4954 1108 331 aa, chain - ## HITS:1 COG:FN1738 KEGG:ns NR:ns ## COG: FN1738 COG1527 # Protein_GI_number: 19705059 # Func_class: C Energy production and conversion # Function: Archaeal/vacuolar-type H+-ATPase subunit C # Organism: Fusobacterium nucleatum # 1 331 2 334 334 232 42.0 6e-61 MDRNLFIQQSAIVRVLEKKLLNKSVFDRMSESRNLEDALRILGDSVYQSYILKLNRNEDF EEALKSEQEDVYKKAYDLSPDDRIVDILVLKYHYHNIKVFIKENILGEDFRQLYIEYGNF DVEKIKKQFLNEKNSSGEFYEVIKLSKEEYEKTKDPQCIDIIVDEFYFSRLKELVKDIDS DLFYKYIEDLIDFTNINTLLRCQKQERTLGFLNRVLIDGGSIKKNEFFRYLNNKIDEDSM LFKPTRIYRYVKHGIEEYNQTNSLLTFEKEKDNYFINLIKDVKRITYGPEVLFAYLLAKE MEIKNLRIIMISKMNGLDASFIKERLRDSYV >gi|289656180|gb|ADCS01000010.1| GENE 6 4964 - 5518 615 184 aa, chain - ## HITS:1 COG:FN1739 KEGG:ns NR:ns ## COG: FN1739 COG1390 # Protein_GI_number: 19705060 # Func_class: C Energy production and conversion # Function: Archaeal/vacuolar-type H+-ATPase subunit E # Organism: Fusobacterium nucleatum # 1 182 1 182 183 94 31.0 2e-19 MSNLDNLINKIETDSVKKSEEILSQANQKASEIISENEERAKTEAKKIIDRANKDSEKIL DKAISGAELKARDMVLEAEQKIVDRVFETVIDRLENLSDEEYITYVKNSIANVKLTSNSV LIVPERYKQAVKNADFGIEISDESVKSGFALLMGNILYNNKFEDIVEVKKSDFEMEVFEK LFIS >gi|289656180|gb|ADCS01000010.1| GENE 7 5530 - 6003 832 157 aa, chain - ## HITS:1 COG:FN1740 KEGG:ns NR:ns ## COG: FN1740 COG0636 # Protein_GI_number: 19705061 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K # Organism: Fusobacterium nucleatum # 6 157 8 159 160 159 65.0 1e-39 MYQGFFVNNGGIMLGAFGVAIAALMAGAGSAKGVGIAGEAAAGVVIEEPEKFGKSLILQL LPGTQGLYGFVIGMLILFKLTPQLDLYEGFVLLCASLPVGLVGYFSAIAQGKVSVAGINI LAKNEEQQGKGIIFAVMVEMYAILAFAISFLIMIKVQ >gi|289656180|gb|ADCS01000010.1| GENE 8 6005 - 7948 2131 647 aa, chain - ## HITS:1 COG:FN1741 KEGG:ns NR:ns ## COG: FN1741 COG1269 # Protein_GI_number: 19705062 # Func_class: C Energy production and conversion # Function: Archaeal/vacuolar-type H+-ATPase subunit I # Organism: Fusobacterium nucleatum # 1 633 1 634 638 402 37.0 1e-111 MAIVRMSKFSLFSFDSDRQNLLNVLQKFKYIHFNTLASDDESFLTKIEAKEELLSLDESM SACKWSIDLLSGFLERSGTFEELKAGVKTFNLKEIENRATAYNFKDNYKYIYELVEKRNS LEQENTNLKTTINDLKPWESLKLNIREILEFENTDVSIGTVPKKYINEFIEEAELSELVH IEQVSKNSSFSYIICFYDKSSKDELSKIMHKYGFSRVEIKTDGNVSDAISKLENTISENN NKILEIEKKVLLKVDLLEDFKIYYEYLKNKRLKFASSEKFLKTENVDIIEGYLPTNREKE LISLLDDTLGKNYYIEIEKASEDDPKVPVQLENNNFVEPFESLTTMYSIPRYNEIDPTPL FAPFYFIFAGIMVGDLGYGLLLFLATFFALKFFNLDKVKRNSIKFFMYISISTMLWGIVF GSFFGDAIPMKSLLNPSEDYVAMILMSLIFGGIHIFFALGIKAYMNIRDKKPLDALYDVG FWYMAVMGAIVCIVANVLKLKSGIFNAAMIIMVLGMIGIVLTGGRTEKTIGAKLGWGIYA LYGITSYFGDFVSYLRLMALSLAGSFIAIAVNIIVRMLFQNGILGIIFGALIFLMFQLFN MFLAFLSAYVHSARLTYVEMFNKFYEGGGVPFKNMVAESNYFNIEEE >gi|289656180|gb|ADCS01000010.1| GENE 9 7935 - 8261 436 108 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|299143414|ref|ZP_07036494.1| ## NR: gi|299143414|ref|ZP_07036494.1| V-type sodium ATP synthase subunit G [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 108 1 108 108 126 100.0 4e-28 MTTDAISKIKNVEDSSKERIIKAEAEAKKILEDAVNKSKIRYDEIFEKACNDRDKILEEA KQKGQINSKPIINEAEEKSNEILNISEKKLLDIADSIVERIVMNNGNS >gi|289656180|gb|ADCS01000010.1| GENE 10 8615 - 8749 127 44 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFISNQKHHRFSILSSVGYGFLFSFFFGLWMCATYMGVSFALSV >gi|289656180|gb|ADCS01000010.1| GENE 11 8822 - 10036 1326 404 aa, chain - ## HITS:1 COG:RSp0424 KEGG:ns NR:ns ## COG: RSp0424 COG0019 # Protein_GI_number: 17548645 # Func_class: E Amino acid transport and metabolism # Function: Diaminopimelate decarboxylase # Organism: Ralstonia solanacearum # 18 396 20 398 413 146 28.0 6e-35 MDINKIIEREAKKYDSFYLYDENIIDEYTGRLKRNFPKVKFLYSVKCNSNSLVVKSVFSR GFGADAASLNEVLMAEENGLSKDEIYYSAPGKSEYDIREAVKKSTIIADSIGEIKKLQNI AEKMNIVLDIGVRINPEFSFDSFDGKPSKFGIDEEQLFEYIKNNELKNINIVGIHVHIKS QELKIENLISYYEKMFNLAERFRKILNTDLKFINMGSGIGIQFSPKDKPLDIERLGEEFN RNLEIFLEEYPNTKVFIEVGRYATGKSGRYITKVMDKKISYGKTYVILKNTLNGFLRPAV IKMVEKFTTEPDLICWEPLFTCSDAFEIRPLKDSSQLEKVTLVGNLCTATDVILEDVTMP KLECEDLVEITNAGAYAAVLSPMQFSSQEKPAELFLTVDGRILK >gi|289656180|gb|ADCS01000010.1| GENE 12 10130 - 11173 1095 347 aa, chain - ## HITS:1 COG:sll1872 KEGG:ns NR:ns ## COG: sll1872 COG1316 # Protein_GI_number: 16330814 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Synechocystis # 53 286 80 317 463 110 32.0 3e-24 MKYVYRTFIVISILSLSILVALVYRIKPTHENKGINKLKNETVESAFEEDKKKDINVFET DKPLRILVLGVDKTATVNMSEEQNGMRSDTIMLFTIDHKNNKVQMFSIPRDSYIKIHGYA KNKINASFNEFVYPNGGLGLTVSTIEDFLDVKIDHYAIVDYKVVSGIVDAVGGIDVNWEH KDYFYRDDWVVPPLEINLKHGINHLDGMGAVSYLRARKVYKDQDIGRISAQQGFLMLLFD KLKSPATFFKLPQLLDIVDEFLETDLNYGEISFLAKYGLSLNREDIIGEKLTGHGENVEI GNEIQNVYVVSIDEARKIINEFPQKLIEKQAEEQLQEDEINTEKADG >gi|289656180|gb|ADCS01000010.1| GENE 13 11183 - 11428 373 81 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|299143417|ref|ZP_07036497.1| ## NR: gi|299143417|ref|ZP_07036497.1| sigma-K factor processing regulatory protein BofA [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 81 4 84 84 84 100.0 3e-15 MNMFIIGAILVCLVAMLVFKSISILFKVVINIVIGAVILNIFNLIGVKFGIDIAVNPLTS FLTGFFGTPAVVILILIKIFL >gi|289656180|gb|ADCS01000010.1| GENE 14 11559 - 11822 380 87 aa, chain + ## HITS:1 COG:TP0072 KEGG:ns NR:ns ## COG: TP0072 COG4545 # Protein_GI_number: 15639066 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutaredoxin-related protein # Organism: Treponema pallidum # 2 87 5 90 90 70 34.0 1e-12 MITVFISGKCPDCPPAIQAFENSDLDYDIIDITENMSNLKKFLKYRDFHPYFDEIKASGK VGVPTIMIGDGEKFIEFDETLNLNKLK >gi|289656180|gb|ADCS01000010.1| GENE 15 11837 - 12487 689 216 aa, chain - ## HITS:1 COG:no KEGG:Amuc_1957 NR:ns ## KEGG: Amuc_1957 # Name: not_defined # Def: membrane protein-like protein # Organism: A.muciniphila # Pathway: not_defined # 12 211 237 437 473 157 36.0 2e-37 MSETNFLRRIFSKSFASKKNLIITIDREHGSGGFEISKIIGELLNIEVYDEDIIELKTLE GKVDPDNIKKDDSFLQGTIYDLYRENYSYSQEDITNIDASFLANSKTIRDFAKKGSCIIL GKCANYVLKDNYDIFSVFITADKEYRIERIMQKYNIDREKAIYTMNKKDTRRKNHYNKFT NGSWGNAFEYDLTINSSKFSNEDVAKIIIKSSELKK >gi|289656180|gb|ADCS01000010.1| GENE 16 12574 - 13482 822 302 aa, chain - ## HITS:1 COG:CAC0076 KEGG:ns NR:ns ## COG: CAC0076 COG0697 # Protein_GI_number: 15893372 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Clostridium acetobutylicum # 2 291 3 287 303 159 35.0 6e-39 MSKKFISGIMLLTAAIIWGLSFMVISIGMDSLGTFAFASIKSLLAAIFLFVIIVAAPKIS IIEKDFKTDFMDRSLAIKGGILCGIAMFLVTNVQQIGIMGTTSGKAGFITTLYIVIIPTI SLFFGEKISKKVILCIIFAIIGFYFMSVNESFDFSKGDILVFISSILMSIHTIMLAKYSP KTNIFELNFYQFLVCGLISLAFALIYETFTFEQVISAMPALLYMSAISGVIAFSLQIYAF RNLNTTIAMMICSLESVIALIGGHIFLNESLTNRELAGCTIVFISIVIAQMPESTKNIQK SN >gi|289656180|gb|ADCS01000010.1| GENE 17 13475 - 14380 617 301 aa, chain - ## HITS:1 COG:FN1038 KEGG:ns NR:ns ## COG: FN1038 COG0697 # Protein_GI_number: 19704373 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Fusobacterium nucleatum # 2 300 4 298 303 187 40.0 1e-47 MKSKFVSSILLIFSAAIWGFAFVAQSTGMEHIGPFTFSALRSIIGSIAMILTINVIPKIG MLQKKETSVVVDKALTRRAGIINGIILFFAMNSQQYGLLYTTPGKAGFITALYIVIIPIM RSFMGEKVSLKVIICVIFATFGMYLLSVKENFTVNFGDIVVFCSAIFYSIHTLTLAHYSP KVDSIKLNAFQFLLSGILSLICALIFETFSLQDIVNSMGSILYVAIMSTAIAYSLQIVAL KVLEPTIASLLNSSESIFAVLGGFLILNQHLTHRELIGCLIMFVSTLIAQIPIMSFRRKY E >gi|289656180|gb|ADCS01000010.1| GENE 18 14456 - 16459 2599 667 aa, chain - ## HITS:1 COG:MA3879 KEGG:ns NR:ns ## COG: MA3879 COG3808 # Protein_GI_number: 20092675 # Func_class: C Energy production and conversion # Function: Inorganic pyrophosphatase # Organism: Methanosarcina acetivorans str.C2A # 1 660 10 685 685 585 55.0 1e-167 MDNILLIAPVVGVLALIFALYKANFVAKQDVGNDRMKEISSYIQDGAMAFLTREYKALVI FVLALGIILAVGLKSPATAICFVVGAVFSVLAGYVGMKVATKANVRTANAAWNGGLGKAL DVAFSGGAVMGMCVVGLGIIGISLAYYFTKNTTIVTGFSLGASSIALFARVGGGIYTKAA DVGADLVGKVEAGIPEDDPRNPAVIADNVGDNVGDVAGMGADLFESYVGALLSVITLGVV AYEESGVTYGLAIAAVGIVASIIAAFFVKGDKNPQKALNNGEYVSAAVTIVIAAVLSSRI FGSFRPFIPVIAGIVVGLIISKFTEYYTAAEYKPVQRIAAESETGASTNIISGLSVGMMS TVWPIVVIAIGIIVAYVGAGGNENAIHGLFGISLAAVGMLSTTAMTIAVDAYGPIADNAG GIAEMCELPEDVREITDSLDAVGNTTAAIGKGFAIGSAALTALALFVSYINATGLEGIDV SKPEVIAGTFIGGMLPFAFSALTMSAVGKAASAMIDEVRRQFREIPGIMEGKATPEYAKC VDISTGAALKEMIIPGMIAVVVPILVGLVFGAEALGGLQAGALVTGVLMAIFMSNAGGAW DNAKKYIEGGNHGGKGSEAHKAAVTGDTVGDPFKDTSGPSLNILVKLITVVSLVFAPIFL EFGGKLF >gi|289656180|gb|ADCS01000010.1| GENE 19 16470 - 16694 421 74 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|299143423|ref|ZP_07036503.1| ## NR: gi|299143423|ref|ZP_07036503.1| preprotein translocase, SecG subunit [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 74 1 74 74 98 100.0 1e-19 METLLSIIIALSALVMIVIVSITESDQAGLGTLSGEETSAWGEHRGSSKKDLENRIMKIA SVIFVVALIALAAI >gi|289656180|gb|ADCS01000010.1| GENE 20 16912 - 17775 916 287 aa, chain - ## HITS:1 COG:L58643 KEGG:ns NR:ns ## COG: L58643 COG1968 # Protein_GI_number: 15674174 # Func_class: V Defense mechanisms # Function: Uncharacterized bacitracin resistance protein # Organism: Lactococcus lactis # 1 281 1 275 284 214 46.0 1e-55 MDFLKVIILGIIEGITEFLPISSTGHLILASDFISLTPKEFENAFEVIIQLGAILSVLVI YFDTLNPFSKNKMSKQLVENQSRLTISQKWFLRDKKTMRLIAKIIVGFLPAAVLGFLFDD LIDKYLFNKVTVSLALVFYGAVIILMENRGKKIKFKYEKLDSITIKTAFFIGVFQCLAMV PGTSRSAATIIGAMILGCSRTAAAEFSFFLAIPTMLGATSLKILKMGIGFSLHQWILILV GGLVSFLVAYAVIIKFMGYIKKHDFKIFGIYRIILGAVVLISMLIFK >gi|289656180|gb|ADCS01000010.1| GENE 21 17790 - 19124 1609 444 aa, chain - ## HITS:1 COG:BH4029 KEGG:ns NR:ns ## COG: BH4029 COG0305 # Protein_GI_number: 15616591 # Func_class: L Replication, recombination and repair # Function: Replicative DNA helicase # Organism: Bacillus halodurans # 7 444 8 445 454 415 51.0 1e-115 MENVNLKIPPNNTEAEQSVLGAMMLSKDAITSAIEILRSDDFYLDIHGEIYSAILSIYNR NEPSDLITVTEELKKRASLEDIGGLSYLANLTSSVTAISNVEQYCKIIKEKSTLRRLITT SDKIIANAYSQDAEVESIIESAEKDIFNITQDSHRDGLIPVKEVLLESFAELESKAQNPN ALTGLTTGFIDLDYKISGLQKSDLILLAARPSMGKTALMVNIATNSAIKAKASVAMFSLE MSKNQLVQRIISSTSHVDLQKVISGNLNEDEWLKIINTMPLISEMKIEIDDTAGISPIEL KAKCRRLKMEKGLDLIVVDYLQLMQMNGRVESRQQEISAISRALKATAKELEVPVIALSQ LSRAPETRTDHRPILSDLRESGAIEQDADIVMFLYRDEYYTKEECENPDTGEVIIAKHRN GPTGTVELLFKKEFTKFLNKEREN >gi|289656180|gb|ADCS01000010.1| GENE 22 19124 - 19570 390 148 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227902056|ref|ZP_04019861.1| ribosomal protein L9 [Finegoldia magna ATCC 53516] # 1 146 1 146 148 154 54 5e-37 MKVILLKDDKNLGKKGDLVEAKDGYARNFLMPKKIAIEATEANLIKWKEQKKLEEEQEKE NRKNFNELKKKIENGKVVISAKAGEGGRLFGAITSKDIAEALSLQMKIEVDKKKVDLSEN IKTEGTRKVSIKLYQDIIADLKVVVEAK >gi|289656180|gb|ADCS01000010.1| GENE 23 19567 - 21567 738 666 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|85057286|ref|YP_456202.1| exopolyphosphatase-related protein [Aster yellows witches'-broom phytoplasma AYWB] # 23 650 64 685 849 288 27 2e-96 MEDKYTLNSFKPYLIFSTIVVLILLYLWPIVGAVAMVIYVYIVYLSAKMIESKNQTLKKY VEDINVDFDTVTKHTIFSMPFPLVVIDDKGKINWYNSQFLNIFSHQDIMNTEISSLISEI NVESIIDKNVEESFYVTLNENKYKVYEKIVDVNKSASDRNKMLIFYFIDSTEYAKLEQKY IDENAIVAKIEVDNFDDAMDSTPSNNRPQLIAEIDSTVRDYFNDFNALVRKFDSDMYLVI MSNKSLNQIKEKRFDLLDDLRELDKGNTIPITLSIGVSSFGLSFRDAYEESDTCLDLALG RGGDQAVVKVADNYEFFGGKSKAVEKRNKVKARVLGIALRQLIDGAKDVFIMGHKNADMD AIGSAIGILRAALNREKEGYIVLNSSNPSIDNLILRMKEEEPDLYNRIVKEDFAANTINA KSLLILVDNHKPSFTEAPDLLKLTPQVVIIDHHRRGKEFVDNPVLTYIEPYASSASELVT EMLTYMNDDLNITHFEADALMSGIVVDTKNFSFQTGVRTFEAASTLKRAGADMLKVKQLF QDDLDTMLNRAEVVHNTKIVFDEIAISRLEREAENSILISAQAADELLEITGIRASFVMT MTDTGVHISGRSKGNISVQLILERIGGGGHLNMAGAQLAVNSLDEAEDILLRAIEEYIND NRGDKK >gi|289656180|gb|ADCS01000010.1| GENE 24 21581 - 22501 665 306 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|299143428|ref|ZP_07036508.1| ## NR: gi|299143428|ref|ZP_07036508.1| hypothetical protein HMPREF0629_00275 [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 306 1 306 306 430 100.0 1e-119 MVKINKSKNNIYILIIKSILITLGGLAFPLLYIFLPAIFLTEAITEGIIKIMGIFIGLCI LVSILISPIAGILVLNLFGPIVLVYHYMISNKYEVNTTIIVAAGTFFLSMIMSFYFLGIT PELLKSQDVISKVIELQREIFNSEQFSEFSKAFNESEILSYYNRSLQIMPAMMVCVSLII SYLTYVISGRTLLKRGGYISQPSSFIFFKVPKEFVIVGVFSLILIYFMQDVFGVGYLILM ENILIVFSLVLFFAGLSLLQFFMVKIKANKFSKIIVTVVTFMFPTVQIILVVIGFVDSIL NFRKLP >gi|289656180|gb|ADCS01000010.1| GENE 25 22634 - 23377 946 247 aa, chain + ## HITS:1 COG:BH1819 KEGG:ns NR:ns ## COG: BH1819 COG1414 # Protein_GI_number: 15614382 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus halodurans # 3 247 6 250 252 121 31.0 1e-27 MIQSLMKAANILEFMKIQNKDYTIAEISEAINMPPSTTHRILNTLIKCEFVSKDDRTHLY KLGPGLISLGMAATNNISLQNEAMPILKELSAQTEEDSFLVIKSGNSGVIIGKAEGLHSL KVVENFGREIALHKGAVRKVILAYQSEEFIREYISRELEPYLGEDKLNSEKLLKDLEDIK ENGVSISISEYINNTMGIGAPIFNYKGDFVASIGIAAPLYRAGQHQEKLVKEIKKSADKL SKKLGYF >gi|289656180|gb|ADCS01000010.1| GENE 26 23445 - 25481 2705 678 aa, chain - ## HITS:1 COG:BH2945 KEGG:ns NR:ns ## COG: BH2945 COG4666 # Protein_GI_number: 15615507 # Func_class: R General function prediction only # Function: TRAP-type uncharacterized transport system, fused permease components # Organism: Bacillus halodurans # 33 672 18 645 656 483 45.0 1e-136 MVDKKIDENLNDDEVVKEALNVETADEQLDVDDLLATYDKETSAMRVLSGNVATLIAIIA ILMSAFHLFTAAHGTLLAMKQRSLHMIFAFTLGFALYPGSSKSDKKKIGILDWALIILSI VVWSYVFFNVENIALKGGKMTQIDMIFGVLAVLITLEVTRRVVGPELPIVTIIFLLYAYF GRSMPGMLAHRGFSIQRIVGHMYLTTEGIMGTPLGVSSTFVFMFILFGSFLDKTGVGKFF IDFAYSLTGSTRSGPAMTSVLSSGLMGSISGSSVANTVTTGAFTIPLMKKVGYKPYYAGA VEATSSTGGQIMPPVMGAAAFIMADFTGFKYIEIVKAAIIPAILYYIAVGTMVHLEACKL GLKGLPKDQLPKLSKIFKEQGYLVVPLIVIITMLIKQFTPMYSALGGIITATVVAGGVSL LKKDGSFTYKSVLGAMESGAKAALGVACACACAGMIVGVVTLTGFGLRIAELIVKIANGN LIATLVLTMVSSIILGMGLPTTAKYIVLATMAVPAITKLGVNLMSAHLFILYFGVVADVT PPVALAAYAGAGIAGANSMKTGVQAFKLAIGAFIIPYIFAMNSHLIMIDTVVDKTINWLP VTSALPTIVSSLIGTVCLAGSIEGYLFGKAQAWQRILLLVAALALLAPGTLTDLAGLGVL AFIFITQKLRFKNNKANA >gi|289656180|gb|ADCS01000010.1| GENE 27 25474 - 25995 645 173 aa, chain - ## HITS:1 COG:no KEGG:Clos_0677 NR:ns ## KEGG: Clos_0677 # Name: not_defined # Def: hypothetical protein # Organism: A.oremlandii # Pathway: not_defined # 5 169 20 183 188 106 40.0 3e-22 MKFKNMAGRKSTPILYFLAIILFISFFIIKVDILLISSKLTGDIRAVRKIDKDSYIGILY THSVQKSETSEWYRVGDDELILMEERYKDQGAGLPVDYLYKFEYYNGGFRLYDINKPFKE FVYRTGAAIANHRLNIDGKEEEFIKFSSPGEALKFEVTKVSLGKYLIWRLTHG >gi|289656180|gb|ADCS01000010.1| GENE 28 26014 - 27024 1483 336 aa, chain - ## HITS:1 COG:BH2947 KEGG:ns NR:ns ## COG: BH2947 COG2358 # Protein_GI_number: 15615509 # Func_class: R General function prediction only # Function: TRAP-type uncharacterized transport system, periplasmic component # Organism: Bacillus halodurans # 1 334 1 330 335 267 45.0 3e-71 MKKRRVLALIFSLIMLMGVLTACGNKGGNNKAGENTAKEDSGDNTFLSIATGGTGGTYYP LGGALATIINNANIGLQANAQATGASVENIKLIHNGDAEIAFIQNDTSYYAVNGIELFAE DTEKYDDLRALACLYPEVVQIVASDSSGIQTIDDLKGKKVAVGAPGSGVEVNARQVLEAH GISYDDLAKVDYLSFAEATDQIKNGQIDATFIVAAIPSSSVTELATTHDVHLVPIAEEVA NKLIEKYPYYTYKEVDATEYRNQGDKVPSVVVQAMLVVNQSMSEENAYNITKAMFENLDV LGESHARGKDVSLETALDGMSIEVHPGAQKYYDEQK >gi|289656180|gb|ADCS01000010.1| GENE 29 27436 - 28311 981 291 aa, chain - ## HITS:1 COG:alr0094 KEGG:ns NR:ns ## COG: alr0094 COG0796 # Protein_GI_number: 17227590 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glutamate racemase # Organism: Nostoc sp. PCC 7120 # 20 226 23 224 292 179 40.0 5e-45 MLESYFRRKRDEVMRDSDRPIGVFDSGIGGLSVLKEAINILTDEKFIYFGDTARIPYGIR TPEEIEKFTEESFEFLKKQGVKAGIIACNTATCYGLETVSKRFDFPIIGVVTPSCEAVHK ITENKNVALLATQGTVNSKVYDEHFFDIDPFVDLRSVGCPDLVVAIENGHIDDEYVEKII EKYLNEINEFDYDTLILGCTHFPHARKAIERVLNKSNRKVNLVDPARTTALDLKAILEKE GLLKGNCLESENDSKIVFYTTANIEKFKKTAIEIVGQMIEESNFEEISLEE >gi|289656180|gb|ADCS01000010.1| GENE 30 28359 - 28613 82 84 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNNLSKLILNKIKKPINDIYIFIHRPLFKPAIPTLPGRRQPSTISVLSLNFCVRYGYRCF PLTFVTGYHLTTNLSSFLVKSSTY Prediction of potential genes in microbial genomes Time: Fri May 27 07:19:43 2011 Seq name: gi|289656179|gb|ADCS01000011.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.11, whole genome shotgun sequence Length of sequence - 20474 bp Number of predicted genes - 14, with homology - 14 Number of transcription units - 5, operones - 3 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 326 - 1393 1025 ## COG0225 Peptide methionine sulfoxide reductase - Prom 1428 - 1487 12.0 - Term 1505 - 1539 6.2 2 2 Op 1 . - CDS 1540 - 1806 293 ## gi|299143435|ref|ZP_07036515.1| hypothetical protein HMPREF0629_00282 3 2 Op 2 . - CDS 1823 - 3025 1625 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase 4 2 Op 3 3/0.000 - CDS 3038 - 4012 922 ## COG1484 DNA replication protein 5 2 Op 4 . - CDS 4018 - 5022 1001 ## COG3935 Putative primosome component and related proteins 6 2 Op 5 . - CDS 5007 - 5606 221 ## PROTEIN SUPPORTED gi|227374762|ref|ZP_03858232.1| acetyltransferase, ribosomal protein N-acetylase 7 2 Op 6 . - CDS 5670 - 7028 1617 ## COG0534 Na+-driven multidrug efflux pump 8 2 Op 7 . - CDS 7025 - 7645 227 ## PROTEIN SUPPORTED gi|90022317|ref|YP_528144.1| ribosomal protein S15 - Prom 7891 - 7950 7.8 + Prom 7790 - 7849 8.5 9 3 Tu 1 . + CDS 7919 - 8983 1443 ## Clos_1250 hypothetical protein + Term 9003 - 9059 3.5 - Term 9089 - 9137 6.3 10 4 Op 1 . - CDS 9239 - 12994 3791 ## Bsel_0606 LPXTG-motif cell wall anchor domain protein 11 4 Op 2 . - CDS 13027 - 17319 3597 ## gi|299143444|ref|ZP_07036524.1| hypothetical protein HMPREF0629_00291 - Prom 17471 - 17530 9.7 12 5 Op 1 . - CDS 17908 - 18690 813 ## COG1521 Putative transcriptional regulator, homolog of Bvg accessory factor 13 5 Op 2 . - CDS 18691 - 19449 976 ## COG4684 Predicted membrane protein 14 5 Op 3 . - CDS 19502 - 20470 1016 ## COG3191 L-aminopeptidase/D-esterase Predicted protein(s) >gi|289656179|gb|ADCS01000011.1| GENE 1 326 - 1393 1025 355 aa, chain - ## HITS:1 COG:HI1455_1 KEGG:ns NR:ns ## COG: HI1455_1 COG0225 # Protein_GI_number: 16273361 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptide methionine sulfoxide reductase # Organism: Haemophilus influenzae # 41 209 36 205 205 202 54.0 1e-51 MKKNLILAGIMLLSLIIITTLEKNKMNDNKFEKELGGDVKMINKENEKTIYLAGGCFWGV EGYFQKINGINSTDTGYANGNSNSTTYNNLKNSDHAETVKIDYDISKISLEEILLHYFRI IDPKSINKQGNDIGRQYRTGIYYTDENDKKIIDKIMKYEEEKHGELAVEVQELKNFVLAE DYHQDYLKNNPSGYCHINLKMASEPLMDEDYPIPSKEELKTKLSEEDYDVIVNAGTERSH TSKLNDEYRKGIYVDKVSKEPLFASKDKFDAGCGWPSFSKPIVTDKLKESKDTSHGMIRT EVRSKNSNSHLGHVFDDGPKESGGLRYCINGASLEFVPYEEMDEKGYGEYKVFCE >gi|289656179|gb|ADCS01000011.1| GENE 2 1540 - 1806 293 88 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|299143435|ref|ZP_07036515.1| ## NR: gi|299143435|ref|ZP_07036515.1| hypothetical protein HMPREF0629_00282 [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 88 1 88 88 76 100.0 4e-13 MKKEQLQKIFIMLVVLVSLLQLIYNESIIKLGEYKMLVRNIEYFVIAVVAVVSVLYARLD NKKTAGNLIKLYLLLIVLFILFKIRGII >gi|289656179|gb|ADCS01000011.1| GENE 3 1823 - 3025 1625 400 aa, chain - ## HITS:1 COG:CAC1001 KEGG:ns NR:ns ## COG: CAC1001 COG0436 # Protein_GI_number: 15894288 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Clostridium acetobutylicum # 1 396 1 395 395 365 46.0 1e-101 MNISQRVQEIPYSAIRKLTPYADEAKAKGKKVYHLNIGAPDTKTPEEFFYAIKNLDMKTL SYAPSIGVKELREQTAKYYKNKGIDFDSDKEIIITAGASEALLFAIIAVSEIGERILTCN PFYSNYYTIFRECGIKPQTFDTTVEDGYRLPDYETIKASVTEQTAAILISNPSNPTGAVY TEDEIRRLVRVAVEEDLYIIADEVYREFVFDGAKFKSFAEIEGIEDRLILLDSISKRFGA CGARIGSIACKNKELMASFVKLATARLAVATVEQIGATQLYDVSEEYFKEVNEEYQRRRD CIYNELSKIDGVKIYKPEGAFYIMPQLPIEDAEDFAKWMLTDFDVDGETVMIAPGFGFYH NSEVGRNQARLAFVLNVEDLKKAIKILGLGLEKYKKLKNL >gi|289656179|gb|ADCS01000011.1| GENE 4 3038 - 4012 922 324 aa, chain - ## HITS:1 COG:CAC3588 KEGG:ns NR:ns ## COG: CAC3588 COG1484 # Protein_GI_number: 15896822 # Func_class: L Replication, recombination and repair # Function: DNA replication protein # Organism: Clostridium acetobutylicum # 7 324 10 324 329 194 38.0 2e-49 MREIFRKIEREYEIKRDENQKALNLRKEEVYLKIPEIKKIDECIVNLSIEATKRQIKNPS VDELEKINEDIYALRGEKERFLLKNGYEADYLDLHYSCEECKDTGYLQGGIRCNCLKARL SNDLYNISNISYMLRKENFDTFDLNIFSDEIYEEEGISPRENMRMIYKCSMEFLKTFKEK NDYNMLFYGATGQGKTFMLNCIAKYLLDRNVNVIYQTAFNMLDVIEDRKFRRNELNSMKY DMLFDSELLIIDDLGIEMVNSFSASEIFNIVNARMISGKKTLISTNLSLKELSNTYTDRV FSRVFYKFKPLKFFGEDLRLKINL >gi|289656179|gb|ADCS01000011.1| GENE 5 4018 - 5022 1001 334 aa, chain - ## HITS:1 COG:CAC3587 KEGG:ns NR:ns ## COG: CAC3587 COG3935 # Protein_GI_number: 15896821 # Func_class: L Replication, recombination and repair # Function: Putative primosome component and related proteins # Organism: Clostridium acetobutylicum # 15 325 14 310 328 130 28.0 3e-30 MYFKLKKLSMDMGDTPVENIFINDYMPAADGNFVKVYLIGYKLARESGGLKNFDFHTVAD ILGLIESDVLRAWDYWEKVGIIKKELQEDGSFDIVFLSLKELYVENIYTVSNAEEKVDQN SILDDKKIAGLLSSADYFMRGRLSIAQKQDIASWRDVYNMPVEIIEEAFWYATEVKKKDS IQYVEAIVRNWSKNNIRTVEDIENSYREHDERYYRLIKIKDKIGLSNKSYNAVDFETVNS WFEKYNISMELVMAACEKCINTNNPNLGYVNRILLNWVEKGITSPDQIKSLDKRETKVKK TKFHNFKQLTDKLSEDDLEELARKKRQAYYKSLR >gi|289656179|gb|ADCS01000011.1| GENE 6 5007 - 5606 221 199 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227374762|ref|ZP_03858232.1| acetyltransferase, ribosomal protein N-acetylase [Thermobaculum terrenum ATCC BAA-798] # 6 169 12 178 207 89 32 1e-17 MIYSDKLYFDKMKLEDVYKFKNWGKHSISLYDDYNFYEDSKKDIEDWFSWKTHGRRVLYF TIFEEGEPIGYLSFKRINKFFKTAVLGIVLNPDKVSCGYGTEILLRMLSYYFNEMNFSKI YLSVAGYNDRAKRLYKKMGFRKYSSTIYFYPNGDIDFSDVEYTKFKKYFLSFFGKLFFYA DKMILDRNTFNEVVKCISN >gi|289656179|gb|ADCS01000011.1| GENE 7 5670 - 7028 1617 452 aa, chain - ## HITS:1 COG:FN1653 KEGG:ns NR:ns ## COG: FN1653 COG0534 # Protein_GI_number: 19704974 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Fusobacterium nucleatum # 8 443 7 442 445 256 35.0 6e-68 MKLKIDGNVNFTEGSIASGIIYFAIPLLLSNFLQQLYNTADLMIVGNFAGKGPMASVGAT GPVANLLIGLFLGLTTGASVIVSQFYGMGNRKKLHSCIHTSYAVAIVGGIVLSVLGYFLS PIILSNLNTPREIMDDSIRYMRIFFLGVTPLLIYNMGAGILRSTGDSRRPFNFLCISAIV NIILDVVFVVYFKLSVVGAGWATFISQVVSAILVTYNLMVSDRIFKLNPKDVKFYRDTIG KILKIGIPIGVQSSVISLSNVLIQSKINTFGANAIAGISAESRIDGFIFMALQAVSLSAT TFAGQNFGAGRFDRIKKGIKTAMLLMVGTALFLSAISIIFAKILISVFNSDPEVINYGSE CLYYIASTCFIFGISEVFGGFVRGAGKAIVPMAISIVSMCGLRMVWIYVALRTWNNIEII YLSYPISWIVTCILNGLYYFFGKWNPQERFNK >gi|289656179|gb|ADCS01000011.1| GENE 8 7025 - 7645 227 206 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|90022317|ref|YP_528144.1| ribosomal protein S15 [Saccharophagus degradans 2-40] # 2 205 9 217 500 92 31 3e-18 MSISRNEMIKLDKEATSKYKIPSLLLMENAAVAIFHQLNIYDSYTIVCGGGNNGGDGVAL ARHLLINKKDVDVFIVKDPKSDDLIKNLEMLKNLTENIFFIENENDLDLLVNSLEVNEVC VDAIFGTGLTRNVDGIYEKVIDNINAHSNYTCSIDIPSGLDADTGNILGSVVMANETITI HDVKDGMVNNEICGKISTVYIGIPAI >gi|289656179|gb|ADCS01000011.1| GENE 9 7919 - 8983 1443 354 aa, chain + ## HITS:1 COG:no KEGG:Clos_1250 NR:ns ## KEGG: Clos_1250 # Name: not_defined # Def: hypothetical protein # Organism: A.oremlandii # Pathway: not_defined # 31 343 47 352 353 192 38.0 2e-47 MNKTKLITTLLLSFTLCACSSNGASESSNKVNEPVKEEIHYYAPLSGIETEKNISKEPVF AVMIDNHPDATPQSGLNDAEIIYEFKAEGEYTRFMALFMKNHVDVLGPVRSARPYFVDTA KEYDAIYAHWGGSDAGYMEIETVGLKDLDGIYLEGSTYYRNKEVKKKRPHDGYTSYDLLY SAAKDFNYLEDLKEVKGFKFDTSENLDTLNLQMGDSPATKLSLDFFKHYNMTFEYNEETK TYLPIRNGENVIDERDGSNVSAKNIILEFAKSSITGPKDTLTIEHIGSGNGKLFTQGKVI DITWEKPSKKEKTIFKTTNGEEIILAPGLTFIEVLDPTDNVLIEPVIQTQESAS >gi|289656179|gb|ADCS01000011.1| GENE 10 9239 - 12994 3791 1251 aa, chain - ## HITS:1 COG:no KEGG:Bsel_0606 NR:ns ## KEGG: Bsel_0606 # Name: not_defined # Def: LPXTG-motif cell wall anchor domain protein # Organism: B.selenitireducens # Pathway: not_defined # 392 1200 1726 2482 3273 158 26.0 1e-36 MIHSAITDKNGRYELKSYMLDKGQWMKVTIPDDEAKLTLKAEDSDMLEHKNSDFDRTNYK TSELPELVRDKSLDTIGCGLIHPPKIKTETVKLHVGEESGEAAAKGLATSDHPTVFPELK YLELQNDVADVDNSGKVIGKTTGKIKAEVTTTNTLASTDQAIPEDTVKAEYDIIVYGNII YNKNHADVTGEAPKDNNGYYPSVNADGDDADTDKVTVLGAGTMKRSGYVFKGWNTQADGK GTMYTKGNTFKTGTLDKDVELYAIWSLIWTPMEIPTRDVKVTKTWDLLEGHTIPVNEIQV ELFKDNISTGKKLTLNEANNWTVTFEKLPVSATLGGANHNYTVKEVGESGSAIKFDNKWF GVTYAGTMKDGLTVTNKEKLPWTPMEPPTRDIKVTKEWKDIQGNNAEAPVEKIEVELYKN GVATGNKLELTKDNNWTATFEKLEVADKLGSTNYYQYTVKETGESGNAIQLNNKWYGVIY GGTMKDGLTVTNKEKLPWTPMIPPTRDIKVIKEWKDIQGNVKEAPVDKIEVELYKDGVAT GTKLDLTKDNNWSVTFEKLPVSATLGGENHNYTVKEVGESRNAIQLAGKWFGVTYTGTMK DGFTVTNKEKIPWTPMEPPIRDIKVTKEWKNIQGNNVQSPVDKIEVELYKDGVETGKTLE LNSGNNWSGEFKNLEVADGLGSINYYQYTVKEVGESGNAIQLAGKWFGVTYTGTMKDGLK VTNKEKLPWTPMEIPTRDVKVTKTWELLEGHTIPVNEIQVELFKNDVSTGKKLTLNEANN WTATFEKLPVSATLGGVNHNYTVKEVGESGSAIKLVGKWFGVIYGGTMKDGLTVTNKEKL PWTPMEPPIRDIKVTKEWKDIQGNDAEAPIESVEVELYKDGVATGKKLELTKDNNWTVTF EKLEVADGLGNINYYQYTVKETGESGNAIQLNNKWYRVTYDGTMVDGFTVTNREKLPWTP MEPPTRDIKVTKEWKDNSENSIEAPIDRIEVELYKDGVATGEKLELTEDNNWSGEFEKLE VANGLGSTNYYQYTVKEVGESGSSIQLAGKWYEVSYSGTMKDGLTITNKEKNSWIPPYTP PEIPYTPPYTPQELPFTPPTSTYTPLETQPVIDETTYVNVEKEWEGKELDSINITLYANG IAIESKTLTKSENWKYTFKDLKTYDDEGNKIEYTIGEEEQQGYKTEITGDMEEGFRIKNI EIPKEIPKEPEVIQYKKIPKTGFVNSGLYAEMATIIAVGIYAVSVFKKKKY >gi|289656179|gb|ADCS01000011.1| GENE 11 13027 - 17319 3597 1430 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|299143444|ref|ZP_07036524.1| ## NR: gi|299143444|ref|ZP_07036524.1| hypothetical protein HMPREF0629_00291 [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 1430 1 1430 1430 2757 100.0 0 MKKRIILQKVISFLLAFIILLGVIVSSSTVFAESESLETTVTKKLGIKLKEDVDIKDENA LFENEIKEAVMKAVNKIDGTEKFLDKNFLIKSPSVKGAPMTNGKLAVYDDSHKINDTSNG DGTSINEYNLATMTDTLFTINYTPFFRVKDDGSNEFGDQRIVVDIPSYGFKLSNPGIEGV QFEKITMLDANGNVIPLDPVSQKNYDKVVKIIYDINDNFLGSLGGSASLVFNIAFNRRSL TAKECEKWLNEGKLETKLNVAACEGENNEPINSAGNPSEYKWRMSPINYNDPKTTVTGDR HLNASSMAKIANSGFINFYDTDPASGPFTGNRDYYYYKQGTIHDGDTPLMSLKHIKVYVP KTASAEGNFILKKLQIRNGLYDLDLAYYVSVSEMKNDGDGRGNYYILTPRKPMYNNGSDH KWSEVFSNGFSPVWQVPDGIEDIGSDTLYEATTPEFVFETPNGTDGKKEVIVSADGQGVK IKTMKAHIVDGYEIHSFAGPGYQLYKNAGGYYTANAVSPDANYSDVGYTRLSNEYYILKD ANGEWNEYFPKNKTGATVETYEFPEEIQPTAWKGTAQTWNNTSYKVAKVVYTTADGNEHT VDVNSPVHLANKVHNFPKVNFDTSGGRITKVEVYWEYLNNDIFNATTHFAGRYNENTRRQ SYAQSKFDFYVTPTATGHLQVKYSAKSTDPTADVNDNFDYEADKAVKNPVNNLSGKAKDD FFWTTVTQKKCTPLKAESTGARLKENVLFPNQAENGTFYDTWMMFFDYGVKKEFSPVTKN PKIDMTVGTLNLKGLDTKADKTGLLTGKFTAAKALSGWKITYKTVDNLSGTESAEKVYDI GNIEDGTKIDLGIDRNVEHLSSIILSYDGVFNIEPFADKQTGIAVLFSNIEYELRNTDFK GNPLTIEKEKGAWYGPNYFIQNLEGKYYNGNCSDGNHIHDAGKGQAFGGRAWNAIKTPQR YGLLTRTYIVTNKTADNVISNTGDDTINSISQTGTSMQKVKFNTKAYAYAMNSDVPEAGK MPYGIPESAYVEITDKQFAADVDKCKFLGYDNASGNVKIEQIKDVDGRVWIKMSITEAGI QALNRQIREITKNKAFSYYYYYNDNVLKFMEDPVVIALKSFRYTSVTSPGENEHHPYGMV YYDMSKLESKLDGSKEEYYSYAKLEGDLFQLTENAAKALDATKEKKLFGVNLSKVEVIVS KNTAVGSNIFPGKYDNIVYGTAGSKFPTQKFYPDERENLRGDFSVQAPDSDGFKEFKAII EIPKKDKSVSYTQQNETVQTPKTEVNMYLTGEAIVTGDSRPGKQEFSYSIDGGNTFVSAA DVTNWDKVTHVKLDLGELPKGSQVNIKLPLRTNAKTTTDELEAYIGGSFETTDYTGYKMS GYINPAKYVYGNFSIISSDVWWDKNENGKLDDGEKKQMVLNLNYILLIMM >gi|289656179|gb|ADCS01000011.1| GENE 12 17908 - 18690 813 260 aa, chain - ## HITS:1 COG:BH0086 KEGG:ns NR:ns ## COG: BH0086 COG1521 # Protein_GI_number: 15612649 # Func_class: K Transcription # Function: Putative transcriptional regulator, homolog of Bvg accessory factor # Organism: Bacillus halodurans # 1 256 1 253 254 216 41.0 4e-56 MLLAINIENKDTIFGIYNNDELLYKFRIKTDISKSADEIGILYKLLLQDVDISFHNIDGV IISSVVPDMTYNVEKMIKKYCKLEPVIVGVGIKTGLNIKCENPKEVGSDRISNAVAVLNK FRGSAIIINSGSVLTFDVVNEKSDFLGGLIVSGIKIARDAVTTENAKLPKIEIVEPKKVI GNTTVKAMQSGLYYQYVSTIDGIIGYILTELELKPEDVNIVMTGSFSSLLTKDSKYNLIV DNNLTLKGLKIIYEINKKMS >gi|289656179|gb|ADCS01000011.1| GENE 13 18691 - 19449 976 252 aa, chain - ## HITS:1 COG:CAC0331 KEGG:ns NR:ns ## COG: CAC0331 COG4684 # Protein_GI_number: 15893623 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Clostridium acetobutylicum # 6 117 4 115 192 104 55.0 2e-22 MNNGRKRSVTNRQLVVAAMLGAVTVVLGLTPLGFIPLGIINATTMHIPVIIAGILEGPIV GAAVGLIFGVSSLFNAITRPGPISFVFYNPLISIVPRILIGLVSAYVYRFLKDKNENSLK KASTVAWLVIIAFLAYLLQKNIKSDANTTTLVLMGIFLVISIFMLYYTYKHMNNDFSITA AAFLGSMTNTIFVLGGIYLIYAERYMNTIGKPIEQARTAILGVTVTSGIPEAILSVIITT AVVKAMLLGRGK >gi|289656179|gb|ADCS01000011.1| GENE 14 19502 - 20470 1016 322 aa, chain - ## HITS:1 COG:BMEII0898 KEGG:ns NR:ns ## COG: BMEII0898 COG3191 # Protein_GI_number: 17989243 # Func_class: E Amino acid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: L-aminopeptidase/D-esterase # Organism: Brucella melitensis # 1 310 4 316 335 250 46.0 2e-66 MYSGYLTDVGNLKVGHAQNFDGLTGVTVIIPEKGAVCGVDVRGSAPGTRETDLLRPENLV EKVNCVMLSGGSAYGLNAASGIMKYLEEKELGMDVTVCRVPIVVGAVIFDLAVGDPHCRP DLEMGYEACKNSKTEDTSMGCIGAGTGATVGKILGNDFSMKSGIGQASIQIGNLKIAALT VLNAFGDICDAEKGIQIAGVYSREEKKFLDTMKIYEEKTANYNAFNRATNTTISIVATNA KLTKANCNKISQMAHDGYARSIEPVHTMFDGDTIFTIATGEVETDISFVGMTAAKVISRA ISNAVYSSKTTKGLISYEDINL Prediction of potential genes in microbial genomes Time: Fri May 27 07:21:04 2011 Seq name: gi|289656178|gb|ADCS01000012.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.12, whole genome shotgun sequence Length of sequence - 70345 bp Number of predicted genes - 76, with homology - 72 Number of transcription units - 35, operones - 19 average op.length - 3.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 2 - 293 331 ## COG3191 L-aminopeptidase/D-esterase 2 1 Op 2 . - CDS 309 - 893 904 ## COG0693 Putative intracellular protease/amidase 3 1 Op 3 . - CDS 907 - 1686 1111 ## COG0345 Pyrroline-5-carboxylate reductase - Prom 1744 - 1803 11.0 + Prom 1556 - 1615 9.4 4 2 Op 1 7/0.000 + CDS 1774 - 2334 733 ## COG2059 Chromate transport protein ChrA 5 2 Op 2 . + CDS 2327 - 2890 525 ## COG2059 Chromate transport protein ChrA + Term 2904 - 2959 8.1 + Prom 2924 - 2983 8.5 6 3 Op 1 . + CDS 3028 - 3852 618 ## COG5523 Predicted integral membrane protein 7 3 Op 2 . + CDS 3868 - 5175 994 ## FMG_1008 hypothetical protein 8 3 Op 3 . + CDS 5168 - 5518 487 ## FMG_1009 hypothetical protein + Term 5532 - 5572 -1.0 - Term 5618 - 5647 0.4 9 4 Op 1 . - CDS 5649 - 6431 961 ## COG1191 DNA-directed RNA polymerase specialized sigma subunit 10 4 Op 2 . - CDS 6442 - 6789 416 ## gi|299143455|ref|ZP_07036535.1| putative anti-sigma B factor 11 4 Op 3 . - CDS 6791 - 7096 400 ## FMG_0007 anti-sigma B factor antagonist 12 4 Op 4 24/0.000 - CDS 7107 - 9527 3082 ## COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit 13 4 Op 5 9/0.000 - CDS 9536 - 11455 2540 ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit 14 4 Op 6 9/0.000 - CDS 11470 - 12555 806 ## COG1195 Recombinational DNA repair ATPase (RecF pathway) 15 4 Op 7 6/0.000 - CDS 12555 - 12749 313 ## COG2501 Uncharacterized conserved protein 16 4 Op 8 16/0.000 - CDS 12758 - 13852 1281 ## COG0592 DNA polymerase sliding clamp subunit (PCNA homolog) - Prom 13936 - 13995 10.4 17 5 Tu 1 . - CDS 14002 - 15345 1369 ## COG0593 ATPase involved in DNA replication initiation - Term 15635 - 15664 -0.2 18 6 Tu 1 . - CDS 15668 - 16030 244 ## gi|299143463|ref|ZP_07036543.1| hypothetical protein HMPREF0629_00311 - Prom 16066 - 16125 8.3 + Prom 16028 - 16087 11.5 19 7 Op 1 . + CDS 16232 - 16366 180 ## PROTEIN SUPPORTED gi|188587524|ref|YP_001919069.1| ribosomal protein L34 20 7 Op 2 16/0.000 + CDS 16369 - 16701 234 ## COG0594 RNase P protein component 21 7 Op 3 18/0.000 + CDS 16706 - 16921 175 ## COG0759 Uncharacterized conserved protein 22 7 Op 4 16/0.000 + CDS 16937 - 17662 686 ## COG0706 Preprotein translocase subunit YidC 23 7 Op 5 . + CDS 17659 - 18468 1209 ## COG1847 Predicted RNA-binding protein + Term 18473 - 18514 6.7 + Prom 18545 - 18604 9.0 24 8 Op 1 . + CDS 18653 - 19723 1046 ## Cbei_0753 hypothetical protein 25 8 Op 2 . + CDS 19734 - 20870 1285 ## COG3853 Uncharacterized protein involved in tellurite resistance + Prom 20893 - 20952 7.2 26 9 Op 1 11/0.000 + CDS 21058 - 22434 1603 ## COG0486 Predicted GTPase 27 9 Op 2 24/0.000 + CDS 22441 - 24336 2065 ## COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division 28 9 Op 3 . + CDS 24333 - 25031 743 ## COG0357 Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division + Term 25037 - 25072 5.1 29 10 Op 1 . + CDS 25109 - 25417 419 ## gi|299143474|ref|ZP_07036554.1| putative alkylphosphonate ABC transporter, permease protein 30 10 Op 2 . + CDS 25488 - 26093 722 ## COG0500 SAM-dependent methyltransferases + Term 26104 - 26145 9.2 + Prom 26205 - 26264 11.5 31 11 Op 1 25/0.000 + CDS 26288 - 27040 985 ## COG1192 ATPases involved in chromosome partitioning 32 11 Op 2 . + CDS 27049 - 27897 1012 ## COG1475 Predicted transcriptional regulators 33 11 Op 3 . + CDS 27897 - 28778 911 ## COG0384 Predicted epimerase, PhzC/PhzF homolog 34 11 Op 4 . + CDS 28849 - 29223 365 ## gi|299143479|ref|ZP_07036559.1| hypothetical protein HMPREF0629_00327 + Term 29267 - 29320 5.2 + Prom 29495 - 29554 10.3 35 12 Tu 1 . + CDS 29630 - 31882 2533 ## Ccur_00300 conserved repeat protein (List_Bact_rpt) + Term 31925 - 31972 13.6 - Term 31913 - 31960 13.2 36 13 Tu 1 . - CDS 32067 - 33071 1293 ## COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family - Prom 33096 - 33155 11.0 - Term 33177 - 33205 1.0 37 14 Op 1 . - CDS 33211 - 33330 188 ## 38 14 Op 2 . - CDS 33340 - 34476 1422 ## COG1883 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit - Prom 34524 - 34583 14.8 - Term 34564 - 34595 1.1 39 15 Tu 1 . - CDS 34603 - 35301 904 ## COG3382 Uncharacterized conserved protein - Prom 35324 - 35383 11.0 + Prom 35330 - 35389 9.4 40 16 Tu 1 . + CDS 35470 - 35799 470 ## Clos_0531 membrane protein + Term 35804 - 35857 6.6 + Prom 35863 - 35922 6.7 41 17 Tu 1 . + CDS 35962 - 36318 488 ## SSUBM407_1759 hypothetical protein + Term 36484 - 36531 2.1 - Term 36479 - 36514 1.3 42 18 Tu 1 . - CDS 36522 - 37646 1282 ## COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase - Prom 37676 - 37735 8.6 + Prom 37632 - 37691 6.2 43 19 Tu 1 . + CDS 37769 - 38089 525 ## COG3323 Uncharacterized protein conserved in bacteria + Term 38108 - 38158 6.1 - Term 38201 - 38227 -1.0 44 20 Tu 1 . - CDS 38228 - 39808 1789 ## FMG_0276 hypothetical protein - Prom 39884 - 39943 11.5 45 21 Tu 1 . - CDS 40344 - 41426 756 ## COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase - Prom 41477 - 41536 13.7 + Prom 41428 - 41487 8.6 46 22 Op 1 . + CDS 41507 - 42523 1189 ## COG2008 Threonine aldolase 47 22 Op 2 . + CDS 42523 - 43203 707 ## COG1192 ATPases involved in chromosome partitioning + Term 43286 - 43323 3.0 48 23 Op 1 . - CDS 43226 - 43381 66 ## 49 23 Op 2 . - CDS 43445 - 44332 667 ## COG2267 Lysophospholipase 50 23 Op 3 1/0.000 - CDS 44329 - 45072 734 ## COG0496 Predicted acid phosphatase 51 23 Op 4 . - CDS 45081 - 45866 788 ## COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I - Prom 45905 - 45964 10.0 52 24 Tu 1 . - CDS 46161 - 46478 186 ## gi|299143495|ref|ZP_07036575.1| hypothetical protein HMPREF0629_00343 - Prom 46503 - 46562 10.5 + Prom 46463 - 46522 11.2 53 25 Op 1 23/0.000 + CDS 46701 - 47054 476 ## COG1380 Putative effector of murein hydrolase LrgA 54 25 Op 2 . + CDS 47047 - 47727 930 ## COG1346 Putative effector of murein hydrolase + Term 47833 - 47888 17.2 - Term 47827 - 47870 10.5 55 26 Op 1 . - CDS 47899 - 48747 1034 ## Amet_4754 hypothetical protein 56 26 Op 2 . - CDS 48749 - 50107 1043 ## Amet_4755 hypothetical protein 57 26 Op 3 8/0.000 - CDS 50116 - 51897 1784 ## COG5002 Signal transduction histidine kinase 58 26 Op 4 . - CDS 51899 - 52591 1046 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 52632 - 52691 9.4 - Term 52643 - 52690 7.2 59 27 Op 1 . - CDS 52693 - 53919 1500 ## COG1301 Na+/H+-dicarboxylate symporters 60 27 Op 2 9/0.000 - CDS 53921 - 54805 1055 ## COG1760 L-serine deaminase 61 27 Op 3 . - CDS 54807 - 55475 615 ## COG1760 L-serine deaminase - Prom 55724 - 55783 10.9 + Prom 55686 - 55745 8.9 62 28 Tu 1 . + CDS 55768 - 57315 1783 ## COG2978 Putative p-aminobenzoyl-glutamate transporter + Term 57322 - 57357 5.1 + Prom 57342 - 57401 10.8 63 29 Op 1 . + CDS 57439 - 58692 1610 ## COG0044 Dihydroorotase and related cyclic amidohydrolases - TRNA 58739 - 58815 79.5 # Arg CCT 0 0 + Prom 58753 - 58812 4.1 64 29 Op 2 . + CDS 58837 - 59058 232 ## - TRNA 58866 - 58954 64.2 # Ser CGA 0 0 - Term 59050 - 59105 17.7 65 30 Op 1 . - CDS 59203 - 60438 1137 ## FMG_0326 hypothetical protein - Prom 60469 - 60528 7.0 66 30 Op 2 . - CDS 60545 - 61603 1051 ## EUBELI_20260 hypothetical protein - Prom 61626 - 61685 4.4 - Term 61661 - 61694 3.1 67 31 Op 1 . - CDS 61699 - 62217 680 ## FMG_0135 hypothetical protein 68 31 Op 2 . - CDS 62226 - 62849 365 ## gi|299143508|ref|ZP_07036588.1| conserved hypothetical protein 69 31 Op 3 . - CDS 62863 - 63513 575 ## Smon_0546 protein of unknown function DUF1361 70 31 Op 4 35/0.000 - CDS 63583 - 65472 224 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 71 31 Op 5 . - CDS 65459 - 67198 200 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 - Prom 67402 - 67461 10.5 + Prom 67176 - 67235 11.7 72 32 Tu 1 . + CDS 67307 - 67831 563 ## COG0671 Membrane-associated phospholipid phosphatase 73 33 Tu 1 . - CDS 67828 - 68268 510 ## COG0590 Cytosine/adenosine deaminases - Prom 68298 - 68357 14.3 - Term 68987 - 69013 -1.0 74 34 Op 1 . - CDS 69018 - 69218 506 ## NT01CX_0906 hypothetical protein 75 34 Op 2 . - CDS 69248 - 70168 1073 ## Swol_1696 hypothetical protein - Prom 70204 - 70263 11.5 + Prom 70177 - 70236 7.5 76 35 Tu 1 . + CDS 70257 - 70334 67 ## Predicted protein(s) >gi|289656178|gb|ADCS01000012.1| GENE 1 2 - 293 331 97 aa, chain - ## HITS:1 COG:BMEII0898 KEGG:ns NR:ns ## COG: BMEII0898 COG3191 # Protein_GI_number: 17989243 # Func_class: E Amino acid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: L-aminopeptidase/D-esterase # Organism: Brucella melitensis # 1 95 4 98 335 103 56.0 1e-22 MYSGYLTDVGNLKVGHAQNFDGLTGVTVIIPEKGAVCGVDVRGSAPGTRETDLLRPENLV EKVNCVMLSGGSAYGLNAASGIMKYLEEKELGMDVTV >gi|289656178|gb|ADCS01000012.1| GENE 2 309 - 893 904 194 aa, chain - ## HITS:1 COG:CAC1629 KEGG:ns NR:ns ## COG: CAC1629 COG0693 # Protein_GI_number: 15894907 # Func_class: R General function prediction only # Function: Putative intracellular protease/amidase # Organism: Clostridium acetobutylicum # 4 186 3 183 188 147 44.0 2e-35 MKDLIIFLAEGFEEIEALTVCDYLRRANLEVELVSISEEKEVKSSHGVRIIADKTIDEIN FEEYRGVYIPGGLPGAVNLAAEKRVLELVEMYYMEEKIVSAICAGPVVLDKINLLKDKKF TCYPGYENNLSSKNRLDNAVVCDENIITGMGPAFAQSIAFKLIEALKNKDSVEKIKEDTL FVKLVDFIKRDEVK >gi|289656178|gb|ADCS01000012.1| GENE 3 907 - 1686 1111 259 aa, chain - ## HITS:1 COG:CAC3252 KEGG:ns NR:ns ## COG: CAC3252 COG0345 # Protein_GI_number: 15896497 # Func_class: E Amino acid transport and metabolism # Function: Pyrroline-5-carboxylate reductase # Organism: Clostridium acetobutylicum # 2 259 3 267 270 227 50.0 2e-59 MNRVGIIGIGNMGKAIAYGLIKNNREIIISNRSNEKLREFEEYKNVKIASSNSELVENSK YIILAVKPNMYETVIDEIRDTVNDKIIISIAAGFTIEKLNKLLPNKKIVMTMPNTPAMVF EAMSAICPNEILTEDEILEVIEIFNLFGRAARLDESQFSAFSAACGCLPAYVYMFIEAAA DSAVLNGMKREDAYNFISQTVLGSAKMVLETQEHPAKLKDMVTSPGGTTIEGVRVLEKMG FRAAIIDAICAANEKSKNM >gi|289656178|gb|ADCS01000012.1| GENE 4 1774 - 2334 733 186 aa, chain + ## HITS:1 COG:FN0712 KEGG:ns NR:ns ## COG: FN0712 COG2059 # Protein_GI_number: 19704047 # Func_class: P Inorganic ion transport and metabolism # Function: Chromate transport protein ChrA # Organism: Fusobacterium nucleatum # 1 183 1 180 186 89 32.0 3e-18 MKKISLIKLFLTFFKINAVTFGGGYTIVPVIKDVFVNDYKLLSEDEMLDILALAQGGPGA MAISTSILTGYKLRGVAGALTTLSASVLPCLIILSTVSIFYSKFRTNFFVNAILDGISGV ICAVLLLTVYNMGSIAYKKYPGFSSIVMILIFILGFFLKVKTSHLILLCAVLGISVFFVI DRRYHG >gi|289656178|gb|ADCS01000012.1| GENE 5 2327 - 2890 525 187 aa, chain + ## HITS:1 COG:FN0713 KEGG:ns NR:ns ## COG: FN0713 COG2059 # Protein_GI_number: 19704048 # Func_class: P Inorganic ion transport and metabolism # Function: Chromate transport protein ChrA # Organism: Fusobacterium nucleatum # 8 180 6 172 176 94 35.0 1e-19 MDNLIVQLYFTFLKIGTLAFGGGYASIPLIERYIVNENNWISKMEFRDLVSISQMTPGPI AINSATFVGQKVGGVLGSVVATAAIVTPQFLLMMFLGHFLFKKNKKFKVLEWMLNGIRAG LASLIFMSALKLIHTSMFPNGFSNVKISAIITFIIGFILYYRKVDMLKLIAIGAILGIVL EAGFIFI >gi|289656178|gb|ADCS01000012.1| GENE 6 3028 - 3852 618 274 aa, chain + ## HITS:1 COG:lin0656 KEGG:ns NR:ns ## COG: lin0656 COG5523 # Protein_GI_number: 16799731 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Listeria innocua # 105 238 33 164 345 71 28.0 2e-12 MWTRKQLKDNAKIFLRKYLKEAIIVCIIFSILNANINFEKRESHFPFSETKYKYQFHLNK YMMPHKHFLNVKSENSNLPKEGLKLLRISNIFKPLVSIVSAATFTIANSIIVMIIIILSV VKIFILNPIKIGMLRFFIDGYENDNADISNVISAYRDNSWFKLSVKLLLKDIFIALWTLL LIIPGIYKSYEYYFVDYILAENPDLSLGEAISISKEMTDGEKYDIFVLNLSFIGWEILSS LLFGLGVILLTPYEYATYTNLYLFDKKTKLETII >gi|289656178|gb|ADCS01000012.1| GENE 7 3868 - 5175 994 435 aa, chain + ## HITS:1 COG:no KEGG:FMG_1008 NR:ns ## KEGG: FMG_1008 # Name: not_defined # Def: hypothetical protein # Organism: F.magna # Pathway: not_defined # 27 433 13 419 424 370 51.0 1e-101 MEVFIIETQVFSRLKNNKSISNNFKLKFIFYFAFLLMLSSLAFNSPTEILNGMKKIILSP CHLITDYIAISNIGATLFNGGIMTLISAFVLKKNKATITGPIIAAVFTVCGFSFFGKNIY NSLPIMFGVYLYCLVEKVKFNKVLIISMFATALCPMVSFLTFSAGLSLKYGIIAGCSVGI LIGFVISPLASSFLSFHQGYNLYNTGFTAGMIGMFLTGFLRMFDKNVEIRNIISLGNNLK ISFFLFPFFLFLFILGFIINNRSFSGYKKLMNNTGRLIADFDLIYGSGITLINMAIMGTI STIYVLLIGGNLNGPILGAIFTIIGFSAFGNHPKNSIPILIGVYLAQFFNKYNPKSTISM ITALFGTTLAPIAGEFGVIWGIIAGFFHVSMVMNIGYLHGGTNLYNNGFSGGFIAATIVP IIKSINNIIERFKDE >gi|289656178|gb|ADCS01000012.1| GENE 8 5168 - 5518 487 116 aa, chain + ## HITS:1 COG:no KEGG:FMG_1009 NR:ns ## KEGG: FMG_1009 # Name: not_defined # Def: hypothetical protein # Organism: F.magna # Pathway: not_defined # 4 116 1 113 114 71 31.0 1e-11 MNSIIKKEEIKAREISDELMYYFFSENIHTFSIYVTFYEDHFIISARGKTKTPPKSVDDL MFIMNSKRMSEVEDYYDGILGFGHTGSDYNILGTLIDEASVTFEDEILNFVIRRNF >gi|289656178|gb|ADCS01000012.1| GENE 9 5649 - 6431 961 260 aa, chain - ## HITS:1 COG:BH0529 KEGG:ns NR:ns ## COG: BH0529 COG1191 # Protein_GI_number: 15613092 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit # Organism: Bacillus halodurans # 9 257 6 254 261 178 40.0 8e-45 MKLEEYHILGRKLDKSERKELFEAYKLNKDPEIRDILIEEHLYIAEILSKKYSGRGIDYD DIFQVASIGLIYAIDRYDFEKGYEFSSFATPTIIGEIKKYFRDKGWTIRVPRRIQELSKK INNAKTQLTQELQRIPTVEDIADYLETTPEEVIEAMEASKVYTPQSLDVTYDTNGDDKEL NLADLVGENEKYFEKIEMKDFLERAMSELNDMERTILIERYFEKKTQVAIAEKLDISQMT ISRIEKKVLKKMREEIKKIM >gi|289656178|gb|ADCS01000012.1| GENE 10 6442 - 6789 416 115 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|299143455|ref|ZP_07036535.1| ## NR: gi|299143455|ref|ZP_07036535.1| putative anti-sigma B factor [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 115 1 115 115 169 100.0 5e-41 MENIYLSIPNKAEYFSSVRLFVSGIMSNLNLDIETVEDIKMAINEGLTIAYELQCNEMIN IEIEVTDEKCKVTISEICKEKIERLEQLSLSNTIIECLVDDSYIEDESIIFIINL >gi|289656178|gb|ADCS01000012.1| GENE 11 6791 - 7096 400 101 aa, chain - ## HITS:1 COG:no KEGG:FMG_0007 NR:ns ## KEGG: FMG_0007 # Name: not_defined # Def: anti-sigma B factor antagonist # Organism: F.magna # Pathway: not_defined # 2 101 3 102 103 73 40.0 2e-12 MFNIEFENSEKLIVYPKGELDVYTSPEFKESVINKYRKDKKNILIDAEELEYIDSTGLGA LIFILNEISEDENKITLINVKSSIKKLFTITKLDSVFEMRD >gi|289656178|gb|ADCS01000012.1| GENE 12 7107 - 9527 3082 806 aa, chain - ## HITS:1 COG:CAC0007 KEGG:ns NR:ns ## COG: CAC0007 COG0188 # Protein_GI_number: 15893305 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit # Organism: Clostridium acetobutylicum # 9 802 7 802 830 901 59.0 0 MTEIYDKGVIDVGLEEKMRKSYLDYSMSVIVSRALPDVKDGLKPVHRRIIYGMQVLGLQP NGPYRKSARLVGDVMGKFHPHGDSSIYDAAVRLAQEFNTRYPLVDGQGNFGNIDGDSAAA MRYTELRMTKLTQEMLRDINKDTVDFKPNFDEEEIEPVVLPSRFPNLLVNGSAGIAVGMA TNMPPHNLTEVINGTISFIDNEEITIDELMNTIKGPDFPTGAYIMGREGIKEAYKTGRGK IQVRAVAEIEEEKNKRRIVVREIPYQVNKSNLIMKIAELVKNKVIDGISAIRDESTRKGI RIAIDLKRDANPNVVLNKLYKNTQMQTTFGIINLALVNGVPKILNLKELISYYVDHQINV VTRRTKFDLEKAKARAHIVEGLKIALDNIDRIIEIVRSSRNDDEAKIKFTEEFGLTEIQG QAILDMRIRRLTGLEREKLDEEYKELIRLIAEFTEILENHEKLMSIIKDELIEIRDKFGD LRRTVIKSAAGEIDLEDIIKEEDVVITLTQFGYIKRMPEGTYKPQKRGGRGISALTTREE DFVNDLFITSTHDLILFFTNLGRAYVLKAYEIPESSRQSKGTAIINILNLSANEKVQSII PVREYDPNLNIVMATKDGIIKRISFEEIKNIRKSGINAMTLRDGDSIIGTRLTTGEDELI LVTKKGMSIRFKEDEVRLTGRTSMGVKAIELNKDDEVVGFDVVSADKYLLVISQNGFGKL TPIDEYRIQSRAGKGIITYKVKDKTGDLVSAKIIDKNDEIMMITSEGIIIRIETEGISVM GRSTSGVKLMNIKDSEVVAVAKYIGD >gi|289656178|gb|ADCS01000012.1| GENE 13 9536 - 11455 2540 639 aa, chain - ## HITS:1 COG:CAC0006 KEGG:ns NR:ns ## COG: CAC0006 COG0187 # Protein_GI_number: 15893304 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Clostridium acetobutylicum # 5 638 4 636 637 800 63.0 0 MKENKNRQYGAEDIQVLTGLEPVRKRPGMYIGSTGSKGLHHLVYEVVDNSIDEALAGICD HILVEIYEDNSVSVSDNGSGIPTEIHPQTGKSTVETVLTILHAGGKFNNGAYKVSGGLHG VGVSVVNALSTELIVNVKRNGNIYEQKFSRGIAKTQLIEVEKLKKEETGTKIFFRPDPEI FDTVEFEFEILSKRFREMAFLNKGIKIQFIDHRIGKDETYHYEGGIKSFVEYINRKKTAI HKEIIYIDEIRENTAVEIALQYTDSYTENILTFANNINTEEGGSHLSGFRSALTRCINDY GRKYNIIKEKEENLSGEDVREGLTGVISVKLPNPQFEGQTKAKLGNSETRGIVDSSVSEN LSSFLEENPKVAKTILEKSLSARRAREAARKARDLTRKKNILESMTLPGKLADCQNSDNE TTEIFLVEGDSAGGSAKDARDSVFQAILPLRGKIMNVEKARLDKILNSDEIKAMITAFGT GIGSEFSIDNLRYNKIIIMTDADVDGAHIMTLLLTFFFRYMRPLIEEGHVYVAQPPLFGI LKGTKALRYCYDDRELQRALNELGRDKKFDIKRYKGLGEMNPEDLWETTMNPDHRILLKV EIKDAIEADETFSMLMGSEVEPRRDFIQENALFVENIDA >gi|289656178|gb|ADCS01000012.1| GENE 14 11470 - 12555 806 361 aa, chain - ## HITS:1 COG:CAC0004 KEGG:ns NR:ns ## COG: CAC0004 COG1195 # Protein_GI_number: 15893302 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair ATPase (RecF pathway) # Organism: Clostridium acetobutylicum # 1 361 1 363 363 214 38.0 2e-55 MKILNLELSNFRNYKYLYYNPKGQINVITGENAMGKTNLLEAIYVLTVGKSFRTVKDSEL IQIGGEQTNLKALSINFEYEDYLDVNIYKDKKNKYSINSDDMNLSQYRRDFSSVIFSPSD LNMVKFSPSERRKYLDSLILKLSSVYEHNLYRYRKIIFERNKLLKKNINYDLLEVYDFQL AKYGVKILRERLKILKEFENYVKYHFLNLSGGESLKITYLSTIPLMSDEEEMEKIFLDSL KNCRKRDLEIKFTTIGPHRDDIDFKIENLSAKTYGSQGEIRTVVLSLKLSEVDIIKNYQK NSPLLLLDDVFSELDKNRASYLINSLKNMQTFITSTNLNEENFRSLNADFYEIKNGQIIN Y >gi|289656178|gb|ADCS01000012.1| GENE 15 12555 - 12749 313 64 aa, chain - ## HITS:1 COG:asl3253 KEGG:ns NR:ns ## COG: asl3253 COG2501 # Protein_GI_number: 17230745 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Nostoc sp. PCC 7120 # 6 64 27 85 93 66 54.0 1e-11 MENNYIKLDSFLKLKNLVQSGGEAKLFIQQGEVFVNGEIEYRRGKKLVNGDKVEFNGETF IVGE >gi|289656178|gb|ADCS01000012.1| GENE 16 12758 - 13852 1281 364 aa, chain - ## HITS:1 COG:CAC0002 KEGG:ns NR:ns ## COG: CAC0002 COG0592 # Protein_GI_number: 15893300 # Func_class: L Replication, recombination and repair # Function: DNA polymerase sliding clamp subunit (PCNA homolog) # Organism: Clostridium acetobutylicum # 1 363 1 364 366 268 42.0 1e-71 MKIRIERKELSRHISIVQKAISSRTTMQILEGILIIAKDNLLTLIASDTEISIKTTLPAI ISDEGKIVVNSRLFGDIIRKLQGDIIDFEINQTNMNIKCLKSEFNIQCQVPDEFPDLPRV DENLTIKLKSSDFKEAIRKTSFAVSFDETRVAFTGVLMDIKNKKINFVALDGFRMALKSL DTECEENISAIIPARSLNELVKIIENEEYVNLTIGRNSLKFDLDKTIFYTTLLSGEFFKY EGLIKNDQSIIVEVLKHDLQSSLERATLLAKEDKANLVKLDMKDSEIEITSNSEIGNVEE SVDAKISGENLKIAFNSKYLLEGVRIIESEKVTLNFTDSINPCIIREEDDKDYIYLVLPV RLAN >gi|289656178|gb|ADCS01000012.1| GENE 17 14002 - 15345 1369 447 aa, chain - ## HITS:1 COG:CAC0001 KEGG:ns NR:ns ## COG: CAC0001 COG0593 # Protein_GI_number: 15893299 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA replication initiation # Organism: Clostridium acetobutylicum # 1 443 1 441 446 431 53.0 1e-120 MDSNLSNIWNDVMNKLRQQSMSTVSFDTWFKDMNLKKIDEEKKIFYVTVPIRFIRERLAN NQSQLKFIKKCIKEVTGCEYDPVILTEDEDEIIPLRKKDTLLPETRLNPKYIFENFVVGK SNEFAHAAALAVAENYLDPSDAHSNPLFIYGGVGLGKTHLMQAIGHFVHQQDPNKKILYV TSEQFTNELINSIQTNKNEHFRNKYRKVDLLLIDDIQFIADKDRTQEEFFHTFNELHESN KQIVLTSDKPPKDIKSLEERLISRFAWGLVVDIGTPDLETRIAILRSKADSEGFNVPDNI INFIAQNVKSNIRELEGALSRIMAYSKLTVGEMTEQTAAIVLRDIYNTKKKKVITSKLIK EVVAKNFRITIEDIDSKKRTRNIAYPRQIAMYITRDLTELSLPKIGEEFGGRDHSTVIHA YNKIESDMASDTSLRIKISNLIKEIKS >gi|289656178|gb|ADCS01000012.1| GENE 18 15668 - 16030 244 120 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|299143463|ref|ZP_07036543.1| ## NR: gi|299143463|ref|ZP_07036543.1| hypothetical protein HMPREF0629_00311 [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 120 1 120 120 160 100.0 2e-38 MFLCLVSSFIFIFIIYIFLKLKNTSFKNIIKNKKILFLMSILLIFIILSEIYVVIGKIKA KNLMWDYLYENNYTQEQIETINVKHSFINRILSYPEWRIKVIYKNNYFHVYRMKNGKIYE >gi|289656178|gb|ADCS01000012.1| GENE 19 16232 - 16366 180 44 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|188587524|ref|YP_001919069.1| ribosomal protein L34 [Natranaerobius thermophilus JW/NM-WN-LF] # 1 44 1 44 44 73 72 2e-12 MKRTFQPKNKQRKREHGFRARMRTRAGRNVIKARRRKGRKILSA >gi|289656178|gb|ADCS01000012.1| GENE 20 16369 - 16701 234 110 aa, chain + ## HITS:1 COG:BH4065 KEGG:ns NR:ns ## COG: BH4065 COG0594 # Protein_GI_number: 15616627 # Func_class: J Translation, ribosomal structure and biogenesis # Function: RNase P protein component # Organism: Bacillus halodurans # 5 110 3 109 119 61 31.0 3e-10 MRKIKDCYLKKNIDFQRVYAKRNINGNKNLTVFFKKNGLDNKRVGFTITKKIGNAVIRNK IKRRLREIYRLNFDILPEGYDYVFVVKKTCVDLSYKELEKSFIHLSKKLR >gi|289656178|gb|ADCS01000012.1| GENE 21 16706 - 16921 175 71 aa, chain + ## HITS:1 COG:FN0003 KEGG:ns NR:ns ## COG: FN0003 COG0759 # Protein_GI_number: 19703355 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Fusobacterium nucleatum # 1 71 1 69 82 89 63.0 2e-18 MKYVMMLFIKFYQKVISKYVFVGAHCRFYPTCSQYSYMAYEKYGFFKGTYLSIRRILKCH PFHKGGYDPLP >gi|289656178|gb|ADCS01000012.1| GENE 22 16937 - 17662 686 241 aa, chain + ## HITS:1 COG:lin2986 KEGG:ns NR:ns ## COG: lin2986 COG0706 # Protein_GI_number: 16802044 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YidC # Organism: Listeria innocua # 33 229 65 247 287 114 35.0 1e-25 MSAISRVLGMFLKLIYDGLVSIFPSEPKNISFFALSIIISTIIIKLLVVPINISMIKNQK KMAELQPEIEKLKKKYQNDPKTLAVKQQQLYKEANYNMLSGCLPMILQFVVLIAFYRVFW EPAKYAFTDKAMFDAMSKNFFYIANLQEKDPTMILGIIAAITTFLTSFVSNQNPAQKTMQ NKQSNSMMTSMMIVMPIMIFTMARKFQSGLVLYWTVSNVFAIVQQLITNRIIAGSVAEEV K >gi|289656178|gb|ADCS01000012.1| GENE 23 17659 - 18468 1209 269 aa, chain + ## HITS:1 COG:BH4063 KEGG:ns NR:ns ## COG: BH4063 COG1847 # Protein_GI_number: 15616625 # Func_class: R General function prediction only # Function: Predicted RNA-binding protein # Organism: Bacillus halodurans # 123 267 64 207 207 108 43.0 8e-24 MNYVIKTAKTVEEAVSQALNELNIKREDAKIEIIEEPSKGFLGLIGSKDATVKVSKIEDT KDILREIFSESTEKSQKKPVKDEIEDKLIVEETVEETVVEVKIETEIEKENTNVSNKSAE EIAREFMNKIMNSLSIDYDLSVEREENILRVDVLGDEQKLGIVIGKRGVTLDSIQYLLSL IINKNSDEYIRVIVDSSGYRKKREATLRELAAKMATKVLKTNRSVRLEPMNASERKIIHE ALQDYEGVITHSEGKDPFRKVVIQKERKY >gi|289656178|gb|ADCS01000012.1| GENE 24 18653 - 19723 1046 356 aa, chain + ## HITS:1 COG:no KEGG:Cbei_0753 NR:ns ## KEGG: Cbei_0753 # Name: not_defined # Def: hypothetical protein # Organism: C.beijerinckii # Pathway: not_defined # 133 356 153 398 399 118 33.0 3e-25 MDKKNIYDDSLNAINNFIESKDFEKIKNVISDTFNFTLDEISSAINKNRKNRNNVAGAML KPVENAALVEQKPKEEKKALGNLRFWKFLFGLHIILSLIFIPIALSDADAKIVFFYMVPV LIGSFFGIKKSKNTYEKMVRFKKYLREFGSSTVVTISDLTFAVNESKDLVVSDLKEFVKK DYFKQGRLVENESIFILDKKTYDEYKQYSLNYESKPEMESANVENECIAQLISYENSLKE PVKTKVKELLLIVQKIFEDVKNNPEDKSSIDKFMVYYLPTTLKLLGEYKSLQSNVSELEN TRIAMNEIEESLDIIIESFKKLLNNMYEDNVIDIKTDISVLKTMLKQEGLLNDDFK >gi|289656178|gb|ADCS01000012.1| GENE 25 19734 - 20870 1285 378 aa, chain + ## HITS:1 COG:SA1238 KEGG:ns NR:ns ## COG: SA1238 COG3853 # Protein_GI_number: 15926986 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized protein involved in tellurite resistance # Organism: Staphylococcus aureus N315 # 18 378 3 375 378 203 36.0 5e-52 MKNNENKIELVLDYENVEEETSKEIEKLSELEDKKELILSEEEERQIDEFAQKIDITNSN LVLQYGAGAQSKIASFSEKTLDKVKTKDLEEVGDLLTGVVTELKNFDVDEESKGLTAFFK KTVNKTAALKTKYSKVETNVELIKKALEDHQLQLLKDIATLDQMYDLNRDYFKELSMYVE AGKKKLSMARNIELPKLEENAKVSNLPVDAQRVNDYENMISRFEKKIHDLELTKMISLQM APQIRMVQSSNTVMVEKIQSTIVNTIPLWKSQMVLGLGAAHSMQAAKTQKEVTDFTNDLF RKNAEKLKMSTIETARASERGIVDIDTIKNTNEKLIEALTEVRRIQIEGRKKRDLASIEL AAIEENLKNSLMNIAKEN >gi|289656178|gb|ADCS01000012.1| GENE 26 21058 - 22434 1603 458 aa, chain + ## HITS:1 COG:BS_thdF KEGG:ns NR:ns ## COG: BS_thdF COG0486 # Protein_GI_number: 16081154 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Bacillus subtilis # 4 458 2 459 459 381 43.0 1e-105 MITDTISAISTATGEAGIGIVRMSGENSIEIANSIFVPMGSKTLIESDNRTMVYGHIYDN DKLIDEVLIVKMLMPHTYTRENVVEIYCHGGIISVRRILDLTLDRGARLAEPGEFTKRAF LNGRLDLAQAEAVIDIIKSKSDISYNMSLRQLEGSLSGRIADIRERVMKMTALIVANIDF PEDEIVEATYSSLREDAVHVVESLNELIKNSNRGKLLRDGINTVILGKPNVGKSSLLNGL LRDERAIVTDIPGTTRDVITDFVNLDGILLKITDTAGIRDTDDTVERIGVDLAKKSIDGS DLIIAIFDTSRPFDNDDYEIIRLIGNKKSIILLNKSDLDKKVSKDDIEDLVKDRDYLDIS VVGEGEILRIEEKIKEMFFDGEVKENSTLYVNNLRHIRALKAAKESMKYVLNDIENEMFL DLLEVNLEDVLSSLGEITGETSTEDVLDKVFSEFCIGK >gi|289656178|gb|ADCS01000012.1| GENE 27 22441 - 24336 2065 631 aa, chain + ## HITS:1 COG:CAC3733 KEGG:ns NR:ns ## COG: CAC3733 COG0445 # Protein_GI_number: 15896964 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: NAD/FAD-utilizing enzyme apparently involved in cell division # Organism: Clostridium acetobutylicum # 6 625 3 620 626 759 61.0 0 MAEIRQYIAGEFDVVVIGAGHAGCEAALAAARIGQKTALLCINLDSIAAMSCNPNVGGTG KGHLVREIDALGGEMARNIDRTFIQSRMLNTSKGPAVHSLRAQADKRAYHDSMKRVIENQ ENLYLREAEATEIVIENKSVKAVITKTGAIYNTKTVVIATGTYLKGRVYMGEVNYASGPQ GFQPANELSSSLEKEGLNLMRLKTGTPARVLRSSIDFSNMEVQYGDEKVVPFSFDNIDKD MNTQQEVCYLTYTTEECHELIKKNINRSALYLGDIEGVGPRYCPSIEDKVMRFSDKNAHQ VFIEPEGLTTDEMYVQGVSSSLPEEIQLELYHKIKGLENCRIMRSAYAIEYDAIDATILK RSLEHMEIDGMFFAGQINGSSGYEEAAGQGLIAGINAALKVQGKEPLILNRSEAYIGVLI DDLVTKGTREPYRMMTARAEYRLTLRQDNADLRLTQKGYDIGLVKQEKYDRYVYRKENIE KELERLREIKVNPTEENNRILEELGSVPLKNTVSLAELIRRPELNYKLVNIFDKERVQIR DDIIEEVEIEIKYEGYIKKQQIQINQFKKLESRKLDINLDYSKIDGLRLEAREKLSLVKP ESIGQASRITGVSPADINVLLIYLEQLRRMK >gi|289656178|gb|ADCS01000012.1| GENE 28 24333 - 25031 743 232 aa, chain + ## HITS:1 COG:CAC3732 KEGG:ns NR:ns ## COG: CAC3732 COG0357 # Protein_GI_number: 15896963 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division # Organism: Clostridium acetobutylicum # 19 231 25 238 239 217 50.0 2e-56 MNLKNRIEEFGLKTDCLEKLEQYRELLLSWNDKMNLTAITEEDEVNIKHFLDSLSLFKTN YFDGSKSVIDIGTGAGFPGIVLKIYNEDLNITLFDSLNKRLLFLNDVIERLKLKDIYTLH GRAEEFGRKDTHRECYDIAVSRAVANLTTLLEYDLPFVKVGGHFIAMKGPEYEEELKNSK TAIEILGGKLKEVIQIKLPSEITHYLIVIEKIKETPKKYPRAGGKPKNNPIR >gi|289656178|gb|ADCS01000012.1| GENE 29 25109 - 25417 419 102 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299143474|ref|ZP_07036554.1| ## NR: gi|299143474|ref|ZP_07036554.1| putative alkylphosphonate ABC transporter, permease protein [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 102 1 102 102 136 100.0 4e-31 MERERLIKIVEELKLRLGIKLGVNPDTKEEGIKIEAVPSTYDIEFIENNREQIIDILKNE YGEIEITVKLEKNDYKKLSEEAKKNILTVEDYVKKIIFDKIR >gi|289656178|gb|ADCS01000012.1| GENE 30 25488 - 26093 722 201 aa, chain + ## HITS:1 COG:CAC0567 KEGG:ns NR:ns ## COG: CAC0567 COG0500 # Protein_GI_number: 15893857 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Clostridium acetobutylicum # 18 194 19 200 209 143 42.0 2e-34 MLRSFFDNTRKPKDNFWGRFMLNGMNKGHNKLALWGISFLKIEKTDNILDIGCGGGKNIE NFLARTDANVYGVDYSEASVKASSQLNKKAVESGRTKVFHASVEKLPFDDESFEIASAFE TIYFWPNPIENFKEVRRILKPNGKFLIVNEMNESDENSFWEKIIEMKVYSSKEITNFLEI AGFKILEFNEKGKNISIIAQK >gi|289656178|gb|ADCS01000012.1| GENE 31 26288 - 27040 985 250 aa, chain + ## HITS:1 COG:BH4058 KEGG:ns NR:ns ## COG: BH4058 COG1192 # Protein_GI_number: 15616620 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Bacillus halodurans # 1 244 1 248 253 258 55.0 8e-69 MAKVITIFNQKGGVGKTTTVINLSAALAKQKKKILVVDMDPQANATSGIEHQEITKNVYD LLINESVDVIVPTSIKNLSLIASSSELAGVEIELSNRENWQYTLKNILDKIKEDYDFIII DSPPSLGILSMMALVASDSILIPVQTEYYALEGVGQLMNTITFVKENFNRNLKIEGVILC MYDSRTNLSVQVSDEVRGFFGEIVYKTTIPRNVRLAEAPSFGVSIFEYDRFSKGARAYSK LAKEFLKANS >gi|289656178|gb|ADCS01000012.1| GENE 32 27049 - 27897 1012 282 aa, chain + ## HITS:1 COG:CAC3729 KEGG:ns NR:ns ## COG: CAC3729 COG1475 # Protein_GI_number: 15896960 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Clostridium acetobutylicum # 1 277 1 281 283 206 48.0 5e-53 MVKKGGLGRGINSFIKDTNAVERLLRQDDEKELKSILIDDIVANEKQARKKFSEEALNEL AKSIEEFGIIQPIVLRKTQDKYMIIAGERRYRAAKIAGLKEVPAVIKEISEQEADKISLI ENVQRIDLNPIEEAIGYKNVIEQYNLTQEELAQALGKSRQYIGNTIRLLKLDERVMDFVY KGLLTPSHAKLLLAIKDKNQQYKEAKRIVRLGNTVKETTLIFKSPATVPNDIYKEQAIRD LSNLLGTKVSLKGKGKVKKIEIEYYSDEDLSRICEAILGSDE >gi|289656178|gb|ADCS01000012.1| GENE 33 27897 - 28778 911 293 aa, chain + ## HITS:1 COG:CAC3446 KEGG:ns NR:ns ## COG: CAC3446 COG0384 # Protein_GI_number: 15896687 # Func_class: R General function prediction only # Function: Predicted epimerase, PhzC/PhzF homolog # Organism: Clostridium acetobutylicum # 1 293 2 301 302 120 29.0 2e-27 MRYFNMYLANAFTNKAFNGNATGVVISGEKMTDEEMQNTARDLNLSETVFINRIDVGEYY TRFFTPNREIDLCGHATIATFYSICENEYIIPIENGINKIIQHTKYGKIPVELEYEDGKI KNVYMLLKTKEIEKTITNEEIADALNISIDEIGIGEIKLEPKKITTGSYDIVVPLKSVHA IEKLNPNFEKIKELSEREKVISFQVFALEDNSNVRQRTFSPSIDVNEEAGSGTSTGATLY YINKNYSSEITQITSMQGIELNRKSVLTAKLKDEDTVRVGGRAFVFMNGVLTI >gi|289656178|gb|ADCS01000012.1| GENE 34 28849 - 29223 365 124 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299143479|ref|ZP_07036559.1| ## NR: gi|299143479|ref|ZP_07036559.1| hypothetical protein HMPREF0629_00327 [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 124 1 124 124 211 100.0 1e-53 MLLLILSYKVLSRRNKVIYVELKDTSYVELIRFTDSTMTTINDKSKLRDILIEIDSLSGE KTTEFTEYASPPNFINIYDKNFKKTELAKTGYFIKINGQWYKLDQKSVDRFDRVFEKYNK NPSE >gi|289656178|gb|ADCS01000012.1| GENE 35 29630 - 31882 2533 750 aa, chain + ## HITS:1 COG:no KEGG:Ccur_00300 NR:ns ## KEGG: Ccur_00300 # Name: not_defined # Def: conserved repeat protein (List_Bact_rpt) # Organism: C.curtum # Pathway: not_defined # 47 508 1100 1530 1816 138 26.0 8e-31 MKRAIKKSMYLMMALLMTLGIFTSGTNVFARITNLETLKLEGDILIGDETEHDKVFLLEK SEDDIEFTVALDVKPIKDKVEEIKNKHYMNVQGLKTYVSNLDYTTIVTLELPNQMDFDPT TTSAALEGVNGALTITDVQKEDKKVTVTIKLVGQDAIEDYQGIVTAINKLDDTIKVKLTG AKFNIDASPNTNYTVKGKIGGKLKANVEREDFAKARATNGNVYVPFNFEFKVEQSEAGKD FILTNDPNNKDIQFTLKFKKKVLESPLDEKTTLYGDILVGKETEHDKVYEVSTKEEKINF TGVVNILPIVNNFKEFEKLFTEDNFNIEEISISGLDHVMTGTFMLPNEMDFDPATVQATL EGANGKFEITNIKTEGRKVTITMKFVGQDKIKTYKDIMDLVNGIKEELKVTLSGVKFNSS AKANTNYTVVGTLKGYFKADAEFKLPEIRVATIRATDNSIESYVIQKLDFDYEAIQSDEG RDFIIKDAPKPQADVIQFTLKYLKDIESPYVKPPVVKVGTLLLSKSAEKNISTEIHIAYI KGYEDQTVRGNGNLTRAEAAAMVTRLAKMDLTDNTKADYQDLKENAWYNKYINAALKANM IDPDGNNIRPNDKITRAEFAKMVAAIDKSSNGLLTFADVKGHKYEKEINQISANKRIVGY EDGTFRPDNNLTRAEAAAMLNRLLNRVADQTAIAGHEQELVHFKDLSKTDWFYYEIIEAS NTHELTRRNTKDEFDRVHEDWLKLLISNLK >gi|289656178|gb|ADCS01000012.1| GENE 36 32067 - 33071 1293 334 aa, chain - ## HITS:1 COG:SPy2090 KEGG:ns NR:ns ## COG: SPy2090 COG0010 # Protein_GI_number: 15675847 # Func_class: E Amino acid transport and metabolism # Function: Arginase/agmatinase/formimionoglutamate hydrolase, arginase family # Organism: Streptococcus pyogenes M1 GAS # 1 331 1 326 328 256 41.0 3e-68 MLKNYIAGNKNFWNGRIDSNEDYDCFRWHQWVEFLDLNDDRSEVFEGKLGFAFLGFECDY GINLNKGRVGAANGPRSIRKELSNLPCQFNSDIKLFDAGNIYVDNLSLIEAQENLAKAVD KILSLNLFPILLGGGHEIAFGHYMGLFNHYKNTGTKQNIGIINFDAHFDLRPYAETGGSS GTMFRQIYDMNKEEGIKYSYFCLGIQRHSNTVNLFKYADEIGAKYVLAKDIVNGDMYSIF EKLDDFIREQDNIYVTICSDVFSTSFAPGVSAPQPLGLDPEKVILFLKRIFSYNKVISFD IAEVSPRFDQDSTTASLAAVLIFSVVTSLAKFKQ >gi|289656178|gb|ADCS01000012.1| GENE 37 33211 - 33330 188 39 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNTNFLISLEIMGKGMLAIFVVLGILALIVALMCRIFNN >gi|289656178|gb|ADCS01000012.1| GENE 38 33340 - 34476 1422 378 aa, chain - ## HITS:1 COG:SPy1184 KEGG:ns NR:ns ## COG: SPy1184 COG1883 # Protein_GI_number: 15675155 # Func_class: C Energy production and conversion # Function: Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit # Organism: Streptococcus pyogenes M1 GAS # 1 371 1 369 373 385 63.0 1e-107 MEFLYEGLLSITWQQIVMYLVGFLLIYLAIVKEFEPALLLPMGFGAIVVNLPLSGAINQV MTGIGEVNGIIEWLFNTGIEASEALPLLLFIGIGAMIDFGPLLSNPKMLLFGAAAQFGIF FALSLATLLGFDLKDAASIGIIGAADGPTSILVSQILKSKYMGAIAVAAYSYMALVPIVQ PFAIKLVTTKNERLIKMKYNPKNVTKKARILFPIIVTIIAGIVAPMSVSLVGFLMFGNLI RESGVLYSLTETASTSLANLITLLLGITIAFSMRAEHFVTVETLLIMLIGLIAFIFDTIG GVLFAKVINIFAKDKINPMIGAAGISAFPMSARVVQKMGLKEDPTNHLLMHAIGANVSGQ IGSVVAGGVILNIIQNYL >gi|289656178|gb|ADCS01000012.1| GENE 39 34603 - 35301 904 232 aa, chain - ## HITS:1 COG:SPy1551 KEGG:ns NR:ns ## COG: SPy1551 COG3382 # Protein_GI_number: 15675447 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pyogenes M1 GAS # 1 232 1 234 238 270 57.0 1e-72 MSKFIADKSFFELFPNAKLGVLLIKNMQNNESPVEVRRMLVDANSEAEKYLVKNTLSENP VIAVWREAFKKFKTKKGARCSIEALLKRVDTGNIVGSINTLVDIYNTASLKFGLPCGAED MDAFVGDLRLTITEGGDEFFAIGSDRNEETYPGELCYKDDEGAICRCFNWRDCQRTMIKD DTKNAFLIMEIVDDRIDDLKSALEFISENTKKYLNADVYLHMLDCENNEVEL >gi|289656178|gb|ADCS01000012.1| GENE 40 35470 - 35799 470 109 aa, chain + ## HITS:1 COG:no KEGG:Clos_0531 NR:ns ## KEGG: Clos_0531 # Name: not_defined # Def: membrane protein # Organism: A.oremlandii # Pathway: not_defined # 2 103 20 122 126 72 42.0 4e-12 MGKLIVKILVSAVAICIAALLSPMTVSNYSSAVVAAIVIGILDWLITKFTGIDASPKGRG AIGFITAALILYITGKIVDGFSTGIIGAFIGAFILGIVDAVIPPDKRPM >gi|289656178|gb|ADCS01000012.1| GENE 41 35962 - 36318 488 118 aa, chain + ## HITS:1 COG:no KEGG:SSUBM407_1759 NR:ns ## KEGG: SSUBM407_1759 # Name: not_defined # Def: hypothetical protein # Organism: S.suis_BM407 # Pathway: not_defined # 1 114 3 117 131 134 64.0 1e-30 MKIELSRFRVRDGKSEVVDMWMNFLNEYMEDVLLTLDREKMYVETIFREKSDNAEYLYWY SIQGENGINVEDSNSWIDKKHLEYWDECIGKNYHVDMSMQVSMIPHHIAKLMTDNTKA >gi|289656178|gb|ADCS01000012.1| GENE 42 36522 - 37646 1282 374 aa, chain - ## HITS:1 COG:CAC0221 KEGG:ns NR:ns ## COG: CAC0221 COG0075 # Protein_GI_number: 15893513 # Func_class: E Amino acid transport and metabolism # Function: Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase # Organism: Clostridium acetobutylicum # 3 369 6 375 377 283 41.0 4e-76 MKILCAGPTSIDKKVLEKMGKSKTNPDLDPNYEKFHRECENKISKLLHTKATSFFMLGEA IICLEASICSLMEKGERVLVIYNGFFGEGFADYVENFGGVAYKYRADFEKGINIDELREF LKKDHDFKIATMVHCETPSGITNDIKSICSLLKEYGILTIVDSVSAIAGEYINFDDFNVD VLIGGSQKCLSAPVGIGIVTISEKAKEKIKNRIEKVPSYYMNFENYYNFKGAPFPYTMNE NLIYAMDEAINQALNCDFVTIHKKYAENTREIFLKCGFELYPKDSFSNTLTAVKTPENIT SENILEQMRKRDIVISKGVGNMAEKIFRIGHMGHNIDRENFKAMYKALDESFKELGVKTK SSLYDEFIKSDIDV >gi|289656178|gb|ADCS01000012.1| GENE 43 37769 - 38089 525 106 aa, chain + ## HITS:1 COG:BH2593 KEGG:ns NR:ns ## COG: BH2593 COG3323 # Protein_GI_number: 15615156 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 5 105 6 106 107 88 44.0 3e-18 MQKHLKVEVFIPKEYVVKVANALNERDILKEGHYDYVFALSEVRGHFRPIEGANPFNGEI GVVSELDEVKMEFRIRENDLADVKRIIELNHPYEEPVVNVYELIDL >gi|289656178|gb|ADCS01000012.1| GENE 44 38228 - 39808 1789 526 aa, chain - ## HITS:1 COG:no KEGG:FMG_0276 NR:ns ## KEGG: FMG_0276 # Name: not_defined # Def: hypothetical protein # Organism: F.magna # Pathway: not_defined # 256 524 7 316 318 81 23.0 1e-13 MNENFQTLPTIVRLNLNQTLQIIRAELTSDLNIAVDVLNLSDIEVLKISFTVIYKNLDDN YLFNSTEFYYQIDSVDIQPQKIYFVKPFKIDDRFKDARAIEIRIKSYTTADGKEIVLDET KEQPYTLALITDEKQKKIKKLLGPEIINYGENLINGWRCVCGAFNSKETQECRHCNRNKN FILNNLTEPLINMKIMSLISNSSESDDSEVIEMTTNLTQTHLSKIAPTTDILEQIRVNED SNKKPANSFMIFLKSISYILLIVLVLMMGMFAFSFTRKFKADHVLDNAKALLASGKYQQA LDELNTLKESDKVEVELLIEKAKKLIESQLAFDAGNNFILDGSYLVAVTKFKEVIPEDTL NFSKSQDKINELENIILEKAVKALDNGNFEQAIDIVNEYLKIVPESANAQKIKDTIKKSQ TKDEPTVSESLEESPEFDKNRAEMAKKAEGLLNTYQKVTEENANLRNNPSLDADVITVLP LDSDLYIKDTKIEGLERIWCNVEAKNAITGETFNGWISNKLMEIKK >gi|289656178|gb|ADCS01000012.1| GENE 45 40344 - 41426 756 360 aa, chain - ## HITS:1 COG:FN0973 KEGG:ns NR:ns ## COG: FN0973 COG0079 # Protein_GI_number: 19704308 # Func_class: E Amino acid transport and metabolism # Function: Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase # Organism: Fusobacterium nucleatum # 1 349 1 347 357 226 36.0 7e-59 MKDNHGANIFELSRKYNFNPKEILDFSSNINPLGTSKRALQYLKDNLELVSAYPDSKYYA LKEEISKFTSADQSDIFLGSGTTQLIREYTALVKPKKAMLFSPCYSEYENELKKHNSKIY FYNLSEENNFEVDVDNLILTVNTEKIELLTFANPNNPTGTILSREQIEKILSSTDVKLLL DETYVEFTNKNNFSSIPLTKKYKNLFVIRGVSKFFAAPGIRLGYGITSDEDSKMKLNENS MLWGINIFADLMGRVMFSDSKYQSDVFEFIKRERNYLLRELSSMPEIKVFKSEGNFILCK ILTDAAAHDLREHLLTKAMVIRDCSSFKNLNEKYFRFCILNEEDNKKLIAEIKKFFNKAD >gi|289656178|gb|ADCS01000012.1| GENE 46 41507 - 42523 1189 338 aa, chain + ## HITS:1 COG:FN0810 KEGG:ns NR:ns ## COG: FN0810 COG2008 # Protein_GI_number: 19704145 # Func_class: E Amino acid transport and metabolism # Function: Threonine aldolase # Organism: Fusobacterium nucleatum # 4 337 4 340 340 249 41.0 4e-66 MNIFLNDYNDLCHEEVYKKLALVNQKGNAGYGNDEYCERAKQLIKRDLKNDNVHIEFVSG GTVANIIAISANLLPYESVIAAASGHITGHEAGSIEATGHKIEIINTEDGKLNDILLEKK IDELTEEYHTVPKIVYISQTTELGSVYSYAEIEDIYNVCLERGLYLYIDGARMAHGLAAS DIEIEDLCNICDIFTLGGTKNGAIYGEVLVIVEPELKQNIRNFMKQRGAVMAKSFAIGAQ FDALFENGLYYKLADKAYDMSVKLVRELKNIGVKFFKEPESNQVFIIYPLEKIKQLEIEN RFEVMPYLENEKIIRFVTNYRTTEDEINGLIKCIKELE >gi|289656178|gb|ADCS01000012.1| GENE 47 42523 - 43203 707 226 aa, chain + ## HITS:1 COG:PA5563 KEGG:ns NR:ns ## COG: PA5563 COG1192 # Protein_GI_number: 15600756 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Pseudomonas aeruginosa # 7 223 9 249 262 66 27.0 3e-11 MYITFFNDKGGVGCSTIVRELSLYFTRINRKVLIIDLDNKGTITKSLGVDSVKTVKDLVE GSSALECITNTKYVDLISYDKNFLPSENTLRSYLGEIEGLYDYIFIDSDASNAEYAIKAS RYVVIPTTCDLYSYFSLEDTLNKIQEHGKRMRILLNKVSDSDICVDITNRILELSEKKSI KIFDTAIRDDETILEIQYKNKELRSFDTVSDAAEDFLMLVDEIDSL >gi|289656178|gb|ADCS01000012.1| GENE 48 43226 - 43381 66 51 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKILTLTLFCNIVSLYYFKSSNNMTGLLYVLPIYIIFKSFLMHLKNQLPVD >gi|289656178|gb|ADCS01000012.1| GENE 49 43445 - 44332 667 295 aa, chain - ## HITS:1 COG:lin1226 KEGG:ns NR:ns ## COG: lin1226 COG2267 # Protein_GI_number: 16800295 # Func_class: I Lipid transport and metabolism # Function: Lysophospholipase # Organism: Listeria innocua # 1 293 1 299 306 138 32.0 2e-32 MKNEIRYTSSNGIDEIDAIIWDCENPKYILQIAHGMCEYIDRYEPLAKFLNERNIIVAGN NHLGHGKTAKILGYFGNGDTLSNVISDINLLSNMLKEKYNLPIYYLGHSMGSFIMRYYIS KYNVQKCILMGTGHISKFNARLLYLLSSIIVKIKGEKYVSGLLLNLTTGSYSNKDEGMYD WISYNKENIKNYVEDEFCGYPFTANGYKTLGQCLVKINDKSNLESTPKDTALLFISGSDD VVGGFKKGVRKVYNNYKNLGFKNLELKFYKNMKHEILNEENNKNVYEKIYEFLEK >gi|289656178|gb|ADCS01000012.1| GENE 50 44329 - 45072 734 247 aa, chain - ## HITS:1 COG:sll1108 KEGG:ns NR:ns ## COG: sll1108 COG0496 # Protein_GI_number: 16332288 # Func_class: R General function prediction only # Function: Predicted acid phosphatase # Organism: Synechocystis # 1 243 7 263 275 134 34.0 2e-31 MNILLTNDDGFFSAGIRELAKQLIFEGHNITVVAPDVENSGKSHSITLMKELKFNKVEID GLNCNSYSVSGTPADCVRTALEVLGNDFDYCFSGCNLGYNAGMDIMYSGTVSAAIEANVF GINAIAISAEYDKISADFKSAAKVAVEVFNKLSLGLKTSHVLNINVPKLSYENLNGIKIC KVGCSVMDKYTTSKTDDGYILKLHGRNKCINVEGTDRYYLERGFATVTPLIHNLTNENLV NLLGERL >gi|289656178|gb|ADCS01000012.1| GENE 51 45081 - 45866 788 261 aa, chain - ## HITS:1 COG:SP1225 KEGG:ns NR:ns ## COG: SP1225 COG1235 # Protein_GI_number: 15901087 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily I # Organism: Streptococcus pneumoniae TIGR4 # 6 251 11 260 269 191 40.0 1e-48 MIFCSLSSGSNGNCEYIEYKNTKILIDAGLSGKKIEELLSSINVSVDEIDAIFVTHEHLD HVKGVGVLSRRHNLKVFANNNTLNAMLPITKEIKAENTYVFENERPFYFKDLYINPIGTF HDCSCGSCFSIIGDKKISLVTDTGYINEDILEQIKDSDLYYLEANHDFEMLMNGSYSWSL KQRIASNKGHLSNKNAAEALDKLLNRKKEIVMLSHLSNDNNLPMLAARTVRDELSQKNIL EGTDYILEVSPRENISTIHKL >gi|289656178|gb|ADCS01000012.1| GENE 52 46161 - 46478 186 105 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|299143495|ref|ZP_07036575.1| ## NR: gi|299143495|ref|ZP_07036575.1| hypothetical protein HMPREF0629_00343 [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 105 1 105 105 201 100.0 2e-50 MLICLLIHPAYAQNYSVREQSEPLILENLLPKRLDVINNLLRGFDDDVIYNYTIKKYFAD TSYISQFIYQDLKQNGVIFSGRLHLQFVQDGWVTYSGNLYAVGTY >gi|289656178|gb|ADCS01000012.1| GENE 53 46701 - 47054 476 117 aa, chain + ## HITS:1 COG:MA3263 KEGG:ns NR:ns ## COG: MA3263 COG1380 # Protein_GI_number: 20092079 # Func_class: R General function prediction only # Function: Putative effector of murein hydrolase LrgA # Organism: Methanosarcina acetivorans str.C2A # 4 112 2 110 165 68 37.0 2e-12 MNYLKEFSILVLCLFLGTVTKHFINFPIPESVYGMVFLFVFIMFKMIKIKDVEKTSHGLL KNLAFFFVPSGVRIISEYDNIKGHTVSIALVIVISTIITTIVTGIVVSALQRRRKNV >gi|289656178|gb|ADCS01000012.1| GENE 54 47047 - 47727 930 226 aa, chain + ## HITS:1 COG:MA3262 KEGG:ns NR:ns ## COG: MA3262 COG1346 # Protein_GI_number: 20092078 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative effector of murein hydrolase # Organism: Methanosarcina acetivorans str.C2A # 3 223 11 231 238 187 52.0 1e-47 MFSSPYFGLILSASTYGFGMYLKKKIKSPLINPLLISIALCIIFLKTFNISYEDYEVGGR YISFMIAPATVALVVPLYHNLDKLLNNLVPIIMGILSGSVVALVSIIILCKLFGLSEFIT ISLLPQSITTAIGIPLCEEYGGSIAVTAMSIVIRGIIGAVSAPIILKIFGIKDKVAVGIS IGTASHAVGTSKAVELGEIEGAMSGLSIAIAGIITVFLIPLMVKFI >gi|289656178|gb|ADCS01000012.1| GENE 55 47899 - 48747 1034 282 aa, chain - ## HITS:1 COG:no KEGG:Amet_4754 NR:ns ## KEGG: Amet_4754 # Name: not_defined # Def: hypothetical protein # Organism: A.metalliredigens # Pathway: not_defined # 1 282 2 293 295 81 27.0 3e-14 MDWSKAKNILIVALLIVNLVLFGYIFSNYYKTQDKSTSNSFINETLRLLEKKDITVDCYI PKNKIKLPSLRVEFESYSNPDLNEKFFKGKGIIETPSINFSRISNDSEMLSILNSRRLIY ENSYPIQSTDDVDFREAQEIIKNFLIEHGFDISDMKCVYTKKENGKYYLNYAKLYHGVTV ERSYLNFILDGDVVTYMDRLWLDILDKSQSDIRLISAPKALLTLLDESEAFGRKITDIEE CFYFDPEEQGYVEDITKAVQGRAIPAWKIQFDDGDDIEIGSY >gi|289656178|gb|ADCS01000012.1| GENE 56 48749 - 50107 1043 452 aa, chain - ## HITS:1 COG:no KEGG:Amet_4755 NR:ns ## KEGG: Amet_4755 # Name: not_defined # Def: hypothetical protein # Organism: A.metalliredigens # Pathway: not_defined # 11 449 10 481 487 85 20.0 5e-15 MKKRDLLLNTLLIALICLTIFQIRFLWFNLPDRSNVIKINNEYNPKELFTELLKPQKMIA NFGEERHSVIYVFDDLYREYLNTILNIFIESKKELLTEISAEEYMKLQENRSIVFKFNHT ITENMFLKLLGFVDKEHDSNNVPIQEIYISNNDIAIVNQIGFFKVHLPIDKDITQTLSTI ENTGYKNYKNFYELYSIEKNIYIPQKNTITARDIYYFSNLKNMDSSYKNKLAERFLNQSI DYIREITQINGSTFVYENQYLKFSNTGLIEYENAEKFESQKENLYISLRTALSFIATKTG IAKDLYLSKIELVENGNNKGYKFSFNLKEDSIPIILDKQENHDYIEMEVFSSFVKSYKQI YRKAVNMPQTEFKETEIYSIEDIIQKNLIKFMPVEEYTNIKDILKNIQDINLAYIDDVSN LEKNKLTMAININYNNRQLYFSLDAGKFLMER >gi|289656178|gb|ADCS01000012.1| GENE 57 50116 - 51897 1784 593 aa, chain - ## HITS:1 COG:BS_yycG KEGG:ns NR:ns ## COG: BS_yycG COG5002 # Protein_GI_number: 16081092 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Bacillus subtilis # 2 590 7 598 611 293 33.0 5e-79 MFNSIKYRFITIYFLLVLISMSIVGAFIINRLEVQQTQNIEDNMTQTLNTIIGASNYISD ENWSNKSSQIKNILNEWRLSVGESIYALSADESPIIIASTTNNKDLIDGKEAFSYKALEP SLILRSLQGETADTITANGDVSLNEKHISKPIFSSDGDVKGILYMTANLSSVYSLLKDAK IILSYATLIALAITSLLGYIIAISITEPIRDVTTKASEMAKGNFDQRVEVKSNDEIGNLG SMFNYLTEELNTTINQMNLEKSKLNTIFNYMAEGVIAVSRSGYLIHANPIAREILDLDEN YLKTKQDLTKLNIFGINYSDNSSLEGESELEIKDKFFKIKYAPYKKGRLTNLGLIVVLQD ITKEHTLDVMRKEFVANVSHELKTPITTIRSYSETLLDSKMEPDEVKHFVKIINRENTRM GRLVSDLLQLSNIDYKTSNYVYEEIDTYDILSQTLEGLSVMIKEKNHNISLEIPMDIRNI YADRHALDQILMNIISNAIKYTDEGGKIKISATSNYFNVNIIVEDNGIGIPESDLPRIFE RFYRVEKGRSRAMGGTGLGLSIARELTLSMGGDIKIDSKFKEGTKISISLKAA >gi|289656178|gb|ADCS01000012.1| GENE 58 51899 - 52591 1046 230 aa, chain - ## HITS:1 COG:BH4027 KEGG:ns NR:ns ## COG: BH4027 COG0745 # Protein_GI_number: 15616589 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Bacillus halodurans # 4 228 5 228 236 239 57.0 4e-63 MFGKILVVDDEAAIAEIIEFNLKRDGFEVELAFDGEQCLEKVKDSNFDLIILDVMMPKID GFTVLRELRKTRHIPIIMLTAKEDEVDKILGLELGADDYVVKPFSMRELTARVKAILRRY DFETETPNSESKVIEAGDLIIDLTKYEIKKKGKVIDLTLREYELLKYLASSPGQVFSREE LLDQVWDYEYYGDIRTVDVTVRRLREKIEDKDKDFKYIMTKRGVGYYFGG >gi|289656178|gb|ADCS01000012.1| GENE 59 52693 - 53919 1500 408 aa, chain - ## HITS:1 COG:FN2053 KEGG:ns NR:ns ## COG: FN2053 COG1301 # Protein_GI_number: 19705343 # Func_class: C Energy production and conversion # Function: Na+/H+-dicarboxylate symporters # Organism: Fusobacterium nucleatum # 8 397 4 391 395 360 52.0 3e-99 MSEQTTKKKIGLIPRLLIAIALGILVGKYCPEIVTKIAVTISANFGKFLGFIIPLMIIAF VTKGISDLSEGAGKLLLVTVILSYASTLIAGSLSYAMASNIFPSFISPEMVEQIKDASGN DLSPFFTIPLNPIIEVTAALVLAFMLGLCVSILRQKGSGETFYKIIDEFNKIINLVLEKA IIPLLPIFIFGNFANMAYSGSVFAILQVFIKIFGCIIVLHIIYISLMFVVAGGFTGKNPI ASLRRALPAYFTAIGTQSSAATIPVNINCNKNIGVTKQIREFVIPLCATCHMPGSMITLT ACVFTLLHMYDMPHSYFLIFKFIAILGVAMVAAPGAPGGAVMSALPFLPAVAIASDSPLA TILISLYLTQDSFGTAANVTGDNAVSMIVEKIYYKNILRKPIPTNENK >gi|289656178|gb|ADCS01000012.1| GENE 60 53921 - 54805 1055 294 aa, chain - ## HITS:1 COG:CAC0674 KEGG:ns NR:ns ## COG: CAC0674 COG1760 # Protein_GI_number: 15893962 # Func_class: E Amino acid transport and metabolism # Function: L-serine deaminase # Organism: Clostridium acetobutylicum # 2 288 3 289 290 227 46.0 2e-59 MLNTANEIINACKENNCHIYDLVIAEEMKNSKKTEEEIRQHLNIVIDVMRKSAAENLNKS NVTRFKMTDGFAKITNDYAENQEPIIGKFLMHTMAMAFSTSEVNDAMGKIVAAPTAGSSG IMPATIVSAIEKYNFDNETVQNGLLTSIAIGQIIAKYATFAGAEGGCQAECGAASAMAAS ALIEMMGGTPEQALHAASITIINVIGLVCDPIAGLVQYPCTFRNASGVVNAFISADLALA GVTSFVPFDEVAQAMGEVGKLMHESLRETGLGGLAGTKTGKRIRDEFLGKTGGN >gi|289656178|gb|ADCS01000012.1| GENE 61 54807 - 55475 615 222 aa, chain - ## HITS:1 COG:CAC0673 KEGG:ns NR:ns ## COG: CAC0673 COG1760 # Protein_GI_number: 15893961 # Func_class: E Amino acid transport and metabolism # Function: L-serine deaminase # Organism: Clostridium acetobutylicum # 1 208 1 208 227 182 45.0 4e-46 MAEYSAFDVLGPIMIGPSSSHTAGACRIARTALKICGSDFTKVEFLLHGSFALTYKGHGT DKALVGGIMGYEPDDERIRSSFEIAHDTGVNYEIKTTDLGEIYHPNSVKVVFHFDYKDDE YVIGSSIGGGAIIIVNINGMPVEFRGMFPTLLLKYHEQQGVIAYVSSILTSDKYNIESIN TDKNPLTEIVTLTLEIDRALTQDLQDKILTSDKFITAKYLGV >gi|289656178|gb|ADCS01000012.1| GENE 62 55768 - 57315 1783 515 aa, chain + ## HITS:1 COG:FN0470 KEGG:ns NR:ns ## COG: FN0470 COG2978 # Protein_GI_number: 19703805 # Func_class: H Coenzyme transport and metabolism # Function: Putative p-aminobenzoyl-glutamate transporter # Organism: Fusobacterium nucleatum # 4 513 2 510 512 530 57.0 1e-150 MSKEKKNQQEISGFLKGVERIGNRLPHPAMLFVILSVIVIIISHFAAKGEPITYFDAKAG EEVTKEVVSLFNADGLRYIFNSATTNFTGFAPLGTVLVAMLGVGVAEWTGLFNATLKKLL YNANPKMLTPIVVFAGIMSNIASDAGYVVVIPIGAILFAMAGRHPLAGLAAAFAGVSGGF SANLILGTTDPLLTNITNEALKAAGIDMSLAPTCNWYFLAVSTIFLTIVGTFVTDKIVEK NLGEYKGSYRPDNAPISELENKGLRNALIALVVYVAVMAFLMFPQNAIFRTLQEDIGKMT LKAFLHDGLIPAMLLLFLIPGLVYGRTIGKIKTSYDLVAAMTAAMKSMGGYMVLAFFAAQ FVAYFGKTNLGIMLSFKGANFLESIGLTGLPLIILFILISAFLNLFMGSASAKWAIMAPI FVPMMYRLGFNPALTQVAYRIGDSSTNIITPLMSYFAMIVVFMQKYDEESGLGTLISMML PYSMSFLLFWTILMSVWFFLGIPTGPDAPLLLGML >gi|289656178|gb|ADCS01000012.1| GENE 63 57439 - 58692 1610 417 aa, chain + ## HITS:1 COG:CAC0519 KEGG:ns NR:ns ## COG: CAC0519 COG0044 # Protein_GI_number: 15893810 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotase and related cyclic amidohydrolases # Organism: Clostridium acetobutylicum # 1 417 2 423 424 446 54.0 1e-125 MIIKNGRIIDPASGMDKIADIKIEDGKIVGIGKFDEVTECINAENLIVAPGLVDIHVHFR DPGFTEKEDIFTGSEAAAAGGFTSVVCMGNTKPVMDNINTLEYFLDKAKKSPIHVYTIAA LTLGFKNEKLSDMRELVKRGCVGFSDDGIPNTDTKLILEGMMIAKELDVPISFHEEDPML NRENGVNHGKISDSMGLYGAPSVSEDVLVARDGAMCLYTGAKIDIQHISSGEAVDIVRFY RNQGANLFAEVTPHHFSCTEDLILEKGTLAKMNPPLRTSKDREKIIQGLVDDTITIIATD HAPHTEEEKNRDFLAAPSGIIGLETALSLGITNLVKTGKLSLIKLLEKMTVNPARLYNLS AGKIEIGAAADIVIFDENEEYVVGEFRSKAKNSPFIGEKLFGKIKYTIADGKIVYKN >gi|289656178|gb|ADCS01000012.1| GENE 64 58837 - 59058 232 73 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKRLCQILKLGGDGGIRTHVPVKANAFRVRPVMTSSIHLQIIYNYLLIISEIVKKFNRNE QLINKNIFNCENL >gi|289656178|gb|ADCS01000012.1| GENE 65 59203 - 60438 1137 411 aa, chain - ## HITS:1 COG:no KEGG:FMG_0326 NR:ns ## KEGG: FMG_0326 # Name: not_defined # Def: hypothetical protein # Organism: F.magna # Pathway: not_defined # 7 408 4 416 416 222 38.0 2e-56 MDKYEIFYNNLRIIYEKYKILQSYNSDFNIFKTIAKPADEVNLHSAFIYSLLNDKKYKLE FFKSFLKTINMDYDEINTLRVEKEKFTKYGIIDIFIDYSEKNIKNIIVIENKIYAGDQEK QLDRYEEYCKKFSEKPKYKIIYLTLDGHKPSTDSCSNKDNLICISYKNEIINWIENCIKI TALEPKLREVLLQYKELLIELSEGSNDYTMEVKDYILESADNFFIAEETKKAFEEIKFDL RLRYWKKLEEKLKDILKEFNLNVEDIKRNNLGYPNRWYSVKNASNYYGLIYLIREIPNIG KIYLKIEKDDDELIFGIRKGITEENEENIYDSNGKSSFKSKLKEIFPNGLEDENWWLFYE KLQLKSKPINPKNWSRELVETLYDENKLESLISQHVEEISKLIKLIVEFKE >gi|289656178|gb|ADCS01000012.1| GENE 66 60545 - 61603 1051 352 aa, chain - ## HITS:1 COG:no KEGG:EUBELI_20260 NR:ns ## KEGG: EUBELI_20260 # Name: not_defined # Def: hypothetical protein # Organism: E.eligens # Pathway: not_defined # 9 352 6 345 345 298 48.0 2e-79 MFSITHAQSKKLLIIYILKILRKYSDEEHKLSQKDILDLLKKEYGMNVERKAIKRNLMDL IECEFDIEYEAFPRKVKNDFGEESENYILTNFYINSEFTDSEIRFLINSTLYSKAIPQKQ KQQLISKLENLSNKYFKSRVKYLNNISNTIPTNQNVFLNIEIIDEAISKNLKISFNYNDY GLDKKLHPKKDETGKDKVYIINPYQTVSNNGRHYLIGNYDKYDNISHYRLDRITNIKILK ETAKSKTTIKNHNDIYDLSKYISKSIYMFSGNIINVSFTTKPDLINDILDWFGDDVTFKE LQHDEISVTVKANEIAIKMWIMQYINHVKVTHPQELIESIKADLKSALNKYK >gi|289656178|gb|ADCS01000012.1| GENE 67 61699 - 62217 680 172 aa, chain - ## HITS:1 COG:no KEGG:FMG_0135 NR:ns ## KEGG: FMG_0135 # Name: not_defined # Def: hypothetical protein # Organism: F.magna # Pathway: not_defined # 6 166 3 162 165 195 63.0 7e-49 MKKYTGYFASHFFNAATFEWTERVASIIERETGIDLYVPQRNAEINDKKNNDDIINDIAI SKADTAELKNANILIACLDGLTIDDGVAAEIMAHGIINEIEEEYGINKNFPRIIIGLITD MRYMGTGENKLYRNLMIIGKVKEHGHLVIGYPGDDSYIDEIVDIIKNFINRE >gi|289656178|gb|ADCS01000012.1| GENE 68 62226 - 62849 365 207 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|299143508|ref|ZP_07036588.1| ## NR: gi|299143508|ref|ZP_07036588.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 386 str. F0131] # 21 207 21 207 207 335 100.0 1e-90 MEKIFKKSKIIIVLLILIFLTGCNEMSKQNMAIQTADEKFENEMLLKMCKQLSHEIKFFK IKVPENAKSWELYFNVYKNGELRKESGLSNNIIEHSKYFSVGTGFYHDKIIFVETTDTNN SDTFSVITTNLDDILVFPEEYTSSASAFQNDIKTLELNRPIILGMRQYTQSSDMRVNNLT TYLDEYNFKNDDTYIIVTLEFKDTILN >gi|289656178|gb|ADCS01000012.1| GENE 69 62863 - 63513 575 216 aa, chain - ## HITS:1 COG:no KEGG:Smon_0546 NR:ns ## KEGG: Smon_0546 # Name: not_defined # Def: protein of unknown function DUF1361 # Organism: S.moniliformis # Pathway: not_defined # 35 208 16 185 188 71 37.0 3e-11 MNREILNNFKKVFIYILIYLCFSAIIIYFNLNRRYLIFNVGLSLIPYIISTFCVNHKNKV FLCFIGLVITTIFYPNAIYMFTDLIHIKTHEYYVFSGGNVNYIQDYTHWIKLSCDTVMVV LSLVLSFESFVNILKILRCYGYKIASFILLMLYSGICGIAVYIGRFLRFNSWDILQIRDI TTSILSSATENDYMLIGIFAIVHFVIILMFFNLKNN >gi|289656178|gb|ADCS01000012.1| GENE 70 63583 - 65472 224 629 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 400 612 33 251 329 90 31 2e-17 MNKNKNSKITSSENLSSIKRLLSYVFKKYKLKFFIVITLVLLSSSVGVVSSIFLKILIDN YITPMLSTPNPSFTPLILMISKFAAIYLTGVISTIIYSRMMVTISENILKTIRDELFEHM EKLPIAYFDTHSHGDIMSRYTNDAQAMQQMLTNTLPEFFSSVVTIIAVTIAMLISSPMLS IVVAICMVLLLKVMNSVGGKSSTYFLKQQQSLGLQNGFIEETINGQKIIKVFSREKNIVD DFEKINNELAENTMLANRYSLILIPIVFNIGNLQYAFIAIVGGLFALNNMFGITVGTIAA FLELSRAFSGPMRNISQEMNQLIMSLAGARRIFSLLDEKEENDDGYIELVRVRKNSDGSL IQCEERTGHWAWKDSTNESSSLTELMGDIKFENVSFSYDGKTDVLHNISLYAHPGQKIAL VGETGAGKTTITNLINRFYEIQSGSITYDGIDIKKIKKKDLRRSLGMVLQDTHLFTGSIN YNLSYGRENVSENEIVEAAKKVQAHNFISLLEDGYNTIISGTDSDLSQGQMQLLSIARAE IYNPPVLILDEATSSIDSRTEMLVQQSMDEVMKGRTTFVIAHRLSTVKNSDVIIVLSKGK IIERGSHDELLALKRTYYKLYTEGFEDKE >gi|289656178|gb|ADCS01000012.1| GENE 71 65459 - 67198 200 579 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 349 560 37 254 329 81 29 1e-14 MIKKIISYLNEYKIYSFLSPSCVIVEVFMDIAIPYLMSLIIDRGITLGSKEDLFKMGFLL ILCVIIALFSGILSGYFATKASSGLAKNLRYAMFKKIQSYSFEDIDSFSKGSLVTRMTTD VQNVQIAFQMSIRLAIRAPLMLIFSFLMSLRINRSLSLNFLLIFPILIIGIYFIISKAFP IFEIIFKTYDKLNTIVSENLLGIRVVKSFDRENHESEKFKSTSKKLFNNYSKVSKLIALS APLMQFSVYFLTIFIAWIGTKFIVAGNLTTGQLLSLITYSFQIQISLMLMSMVLVNLIIS RNSTGRIVEVLNKNPSLTSDKNGITVISDGSINFENVNFSYFKNENKLSLKNINLSIKSG DNVGIIGATGSSKTTLVSLIPRLYDTLSGSVKIGGIDVREYNLKSLRDNISIVLQKNQLF TGTVLENLKWGNENATIDEVINAAKIAQAHDFIMEDKDGYDRKVERGGTNFSGGQRQRLC IARALLKNPKILILDDSTSALDNSTEIKFVEALKATNPELTKITISQRINSLANCNYIIV MDNGEINAIGTHDELIRTNKIYREIAQTQNRGGELNEQK >gi|289656178|gb|ADCS01000012.1| GENE 72 67307 - 67831 563 174 aa, chain + ## HITS:1 COG:CAC2438 KEGG:ns NR:ns ## COG: CAC2438 COG0671 # Protein_GI_number: 15895703 # Func_class: I Lipid transport and metabolism # Function: Membrane-associated phospholipid phosphatase # Organism: Clostridium acetobutylicum # 17 157 25 166 180 107 45.0 1e-23 MELKILDMISTIRNPILDKIMIFISTLGNAGAIFIIIGLFLFIRKDTRRIGLTVLISLLF CLIFGNIILKPLIGRVRPYDANNVKIIVKHLKDASFPSGHTFSAVACAMSVSFYNRRYGR ILFVFAALMAFSRMYLYLHYPTDILGGAVLGIFCALLSREVMKSDKLKKYREVN >gi|289656178|gb|ADCS01000012.1| GENE 73 67828 - 68268 510 146 aa, chain - ## HITS:1 COG:lin2867 KEGG:ns NR:ns ## COG: lin2867 COG0590 # Protein_GI_number: 16801927 # Func_class: F Nucleotide transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: Cytosine/adenosine deaminases # Organism: Listeria innocua # 1 145 7 152 154 139 47.0 1e-33 MNEALKLAKISYDNGDIPIGAIIVFNDEIIGRGFNKKELLKDASAHAELIAMKEASKFLN SYHLEDCTMYVTLEPCAMCAGAILNFRLKKIYIGAKNERFGCCGSKINLLNYNFNHTCEC EFGILEDDCKNLISNFFIELRINKRG >gi|289656178|gb|ADCS01000012.1| GENE 74 69018 - 69218 506 66 aa, chain - ## HITS:1 COG:no KEGG:NT01CX_0906 NR:ns ## KEGG: NT01CX_0906 # Name: not_defined # Def: hypothetical protein # Organism: C.novyi # Pathway: not_defined # 1 60 1 60 63 73 61.0 3e-12 MKVTKDTIIGELLANKPESIGTLMSFGMGCVMCPASQMESLEEAALVHGLNVDLLVEALN TQEQPE >gi|289656178|gb|ADCS01000012.1| GENE 75 69248 - 70168 1073 306 aa, chain - ## HITS:1 COG:no KEGG:Swol_1696 NR:ns ## KEGG: Swol_1696 # Name: not_defined # Def: hypothetical protein # Organism: S.wolfei # Pathway: not_defined # 18 155 353 491 497 107 43.0 5e-22 MKKILVLSLFLCTLIAKNVYAKVLPTDQKVTFDNNEVKLEAYNIDGNNYFKLRDIAAILN NSKVQFNVEYNEEKKIIEISRDKSYTKLSSDLTTTENKNLDAKKSTQNITIDGNEIYYDG YNINGNNYFKLRDLGQTIGFYVDYDEKEDTVIIKSEKIEPTDLIQREKIEIKAIATDIIS NSKSIKISDIKSLKIEDFTSIAKSIVFLVNGEKQVSAKAIYEASNNSVVLKPVHLKYDGK FVISPILKIEQGEKSEFMALKSNEINLDEILKSVDKKKKFKLILGFYEDENKNSNFKSLS AIEFKN >gi|289656178|gb|ADCS01000012.1| GENE 76 70257 - 70334 67 25 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSSGDEYLDYILKQLSGLSGLNIES Prediction of potential genes in microbial genomes Time: Fri May 27 07:23:28 2011 Seq name: gi|289656177|gb|ADCS01000013.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.13, whole genome shotgun sequence Length of sequence - 56588 bp Number of predicted genes - 58, with homology - 51 Number of transcription units - 29, operones - 14 average op.length - 3.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 3 - 234 123 ## COG0233 Ribosome recycling factor 2 1 Op 2 . - CDS 144 - 266 153 ## - Prom 302 - 361 11.5 + Prom 275 - 334 7.5 3 2 Tu 1 . + CDS 355 - 432 67 ## + Term 459 - 494 0.1 + Prom 436 - 495 4.5 4 3 Tu 1 . + CDS 541 - 669 118 ## + Prom 716 - 775 10.8 5 4 Op 1 . + CDS 820 - 1119 506 ## gi|299143517|ref|ZP_07036597.1| sodium pump decarboxylase, gamma subunit subfamily 6 4 Op 2 9/0.000 + CDS 1143 - 1541 641 ## COG0511 Biotin carboxyl carrier protein 7 4 Op 3 1/0.000 + CDS 1558 - 2700 1516 ## COG1883 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit + Term 2718 - 2761 8.2 + Prom 2710 - 2769 4.8 8 5 Op 1 21/0.000 + CDS 2790 - 3752 1243 ## COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit 9 5 Op 2 3/0.000 + CDS 3755 - 4552 1059 ## COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit 10 5 Op 3 . + CDS 4565 - 6325 2209 ## COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) + Term 6331 - 6364 4.1 + Prom 6443 - 6502 7.5 11 6 Op 1 4/0.000 + CDS 6548 - 7357 944 ## COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) 12 6 Op 2 2/0.000 + CDS 7384 - 8712 1398 ## COG1775 Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB 13 6 Op 3 . + CDS 8721 - 9869 1352 ## COG1775 Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB + Term 9873 - 9901 1.4 + Prom 10560 - 10619 4.8 14 7 Tu 1 . + CDS 10651 - 10839 99 ## - Term 10764 - 10808 7.6 15 8 Tu 1 . - CDS 10984 - 11958 755 ## COG2207 AraC-type DNA-binding domain-containing proteins - Prom 12170 - 12229 8.6 + Prom 11615 - 11674 6.4 16 9 Tu 1 . + CDS 11919 - 12104 98 ## + Prom 12134 - 12193 5.5 17 10 Op 1 . + CDS 12248 - 12478 414 ## Fisuc_1734 FeoA family protein 18 10 Op 2 . + CDS 12475 - 14541 1392 ## COG0370 Fe2+ transport system protein B 19 10 Op 3 . + CDS 14557 - 14793 298 ## gi|299143529|ref|ZP_07036609.1| hypothetical protein HMPREF0629_00379 20 11 Tu 1 . + CDS 14878 - 16212 1332 ## COG0534 Na+-driven multidrug efflux pump + Term 16385 - 16427 -0.5 - Term 16878 - 16929 17.5 21 12 Tu 1 . - CDS 16931 - 17524 699 ## COG3291 FOG: PKD repeat - Prom 17642 - 17701 12.9 + Prom 17634 - 17693 10.0 22 13 Op 1 . + CDS 17766 - 18815 1096 ## COG0009 Putative translation factor (SUA5) 23 13 Op 2 1/0.000 + CDS 18826 - 19455 997 ## COG0035 Uracil phosphoribosyltransferase 24 13 Op 3 2/0.000 + CDS 19479 - 20492 1191 ## COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase 25 13 Op 4 . + CDS 20495 - 21604 1510 ## COG0381 UDP-N-acetylglucosamine 2-epimerase + Term 21655 - 21700 11.2 - Term 21643 - 21688 11.2 26 14 Tu 1 . - CDS 21701 - 23725 2172 ## COG4690 Dipeptidase - Prom 23790 - 23849 5.5 + Prom 23911 - 23970 13.6 27 15 Tu 1 . + CDS 24019 - 24183 68 ## + Prom 24186 - 24245 5.8 28 16 Op 1 20/0.000 + CDS 24285 - 25469 1589 ## COG0183 Acetyl-CoA acetyltransferase 29 16 Op 2 7/0.000 + CDS 25484 - 26263 1152 ## COG1024 Enoyl-CoA hydratase/carnithine racemase 30 16 Op 3 . + CDS 26282 - 27124 1167 ## COG1250 3-hydroxyacyl-CoA dehydrogenase + Term 27131 - 27171 7.2 + Prom 27142 - 27201 10.7 31 17 Tu 1 . + CDS 27251 - 28465 1598 ## COG1301 Na+/H+-dicarboxylate symporters + Term 28582 - 28618 3.0 + Prom 28713 - 28772 12.2 32 18 Tu 1 . + CDS 28800 - 30065 1802 ## COG3681 Uncharacterized conserved protein + Term 30066 - 30106 9.2 - Term 30052 - 30092 9.2 33 19 Tu 1 . - CDS 30094 - 30708 562 ## COG1392 Phosphate transport regulator (distant homolog of PhoU) - Prom 30757 - 30816 10.1 + Prom 30674 - 30733 10.9 34 20 Op 1 . + CDS 30846 - 32444 1778 ## COG1283 Na+/phosphate symporter 35 20 Op 2 . + CDS 32478 - 34019 1763 ## COG1488 Nicotinic acid phosphoribosyltransferase 36 20 Op 3 . + CDS 34025 - 34891 773 ## COG1032 Fe-S oxidoreductase 37 20 Op 4 . + CDS 34904 - 35644 532 ## gi|299143547|ref|ZP_07036627.1| conserved hypothetical protein + Term 35682 - 35731 4.8 + Prom 35652 - 35711 13.9 38 21 Op 1 . + CDS 35735 - 36379 730 ## COG0546 Predicted phosphatases 39 21 Op 2 . + CDS 36397 - 37044 807 ## COG2860 Predicted membrane protein 40 21 Op 3 . + CDS 37056 - 37952 787 ## COG1307 Uncharacterized protein conserved in bacteria + Prom 38025 - 38084 7.8 41 22 Op 1 7/0.000 + CDS 38208 - 38981 1140 ## COG1540 Uncharacterized proteins, homologs of lactam utilization protein B 42 22 Op 2 1/0.000 + CDS 38994 - 40193 1671 ## COG1914 Mn2+ and Fe2+ transporters of the NRAMP family 43 22 Op 3 21/0.000 + CDS 40208 - 40954 900 ## COG2049 Allophanate hydrolase subunit 1 44 22 Op 4 . + CDS 40947 - 41891 1380 ## COG1984 Allophanate hydrolase subunit 2 + Term 41905 - 41964 10.3 + Prom 41951 - 42010 10.2 45 23 Tu 1 . + CDS 42034 - 42789 830 ## COG2116 Formate/nitrite family of transporters + Prom 42901 - 42960 8.4 46 24 Op 1 . + CDS 43046 - 44311 1982 ## COG0334 Glutamate dehydrogenase/leucine dehydrogenase 47 24 Op 2 . + CDS 44343 - 45278 930 ## COG0679 Predicted permeases 48 24 Op 3 . + CDS 45311 - 45418 99 ## + Term 45434 - 45464 1.1 49 24 Op 4 . + CDS 45475 - 46647 1570 ## COG0192 S-adenosylmethionine synthetase + Term 46655 - 46692 6.1 + Prom 46649 - 46708 6.3 50 25 Op 1 . + CDS 46728 - 48914 2124 ## COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member 51 25 Op 2 . + CDS 48907 - 49530 599 ## COG1040 Predicted amidophosphoribosyltransferases 52 26 Tu 1 . - CDS 49511 - 50446 861 ## COG1295 Predicted membrane protein - Prom 50471 - 50530 8.5 + Prom 50366 - 50425 7.6 53 27 Op 1 40/0.000 + CDS 50521 - 51213 884 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 54 27 Op 2 . + CDS 51213 - 52433 1249 ## COG0642 Signal transduction histidine kinase 55 27 Op 3 . + CDS 52430 - 53176 690 ## COG4509 Uncharacterized protein conserved in bacteria + Term 53177 - 53227 13.3 - Term 53165 - 53215 9.5 56 28 Op 1 . - CDS 53231 - 54940 1024 ## gi|299143565|ref|ZP_07036645.1| hypothetical protein HMPREF0629_00415 57 28 Op 2 . - CDS 54937 - 55836 885 ## COG4129 Predicted membrane protein - Prom 56059 - 56118 9.0 + Prom 55941 - 56000 9.2 58 29 Tu 1 . + CDS 56042 - 56575 444 ## PROTEIN SUPPORTED gi|28210085|ref|NP_781029.1| SSU ribosomal protein S30P Predicted protein(s) >gi|289656177|gb|ADCS01000013.1| GENE 1 3 - 234 123 77 aa, chain - ## HITS:1 COG:lin1351 KEGG:ns NR:ns ## COG: lin1351 COG0233 # Protein_GI_number: 16800419 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome recycling factor # Organism: Listeria innocua # 7 77 14 84 185 86 59.0 1e-17 MHFDCKERICKSITDRSKSIRAGRANPSLLDKITVDYYGQATPLNQVAGISAPEPRLLAI TPWDASLIPAIEKAILK >gi|289656177|gb|ADCS01000013.1| GENE 2 144 - 266 153 40 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKKILVLSLFLCTLIAKNVYAKVLPTDQKVLEREELIHLY >gi|289656177|gb|ADCS01000013.1| GENE 3 355 - 432 67 25 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSSGDEYLDYILKQLSGLSGLNIES >gi|289656177|gb|ADCS01000013.1| GENE 4 541 - 669 118 42 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MADKEYDFYKRKNKINKFLRVLRGIIIFNYNREGLYCVIEVL >gi|289656177|gb|ADCS01000013.1| GENE 5 820 - 1119 506 99 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299143517|ref|ZP_07036597.1| ## NR: gi|299143517|ref|ZP_07036597.1| sodium pump decarboxylase, gamma subunit subfamily [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 99 1 99 99 134 100.0 2e-30 MWQGTSMTIGEAFQVALTGFSIVFLALISIALFVKIISSVVNSVVKEENKPASAPSPAPV KVAEDKTDKALVAAIIAAVSAEMRQSVDKFKIVSINEKK >gi|289656177|gb|ADCS01000013.1| GENE 6 1143 - 1541 641 132 aa, chain + ## HITS:1 COG:FN0200 KEGG:ns NR:ns ## COG: FN0200 COG0511 # Protein_GI_number: 19703545 # Func_class: I Lipid transport and metabolism # Function: Biotin carboxyl carrier protein # Organism: Fusobacterium nucleatum # 1 132 1 134 134 69 43.0 2e-12 MKYQVKVDGKVFEVEVEKVSGASKSLTMADFGAPAPAPVSAPVQQAAPTPAPAAPAPKAA STGGEQVLAPMPGNIWKIVAADGSQVKAGEVIVILEAMKMENEIVAPCDGTVSIKVTTGQ TVDTDALIAEVK >gi|289656177|gb|ADCS01000013.1| GENE 7 1558 - 2700 1516 380 aa, chain + ## HITS:1 COG:FN0201 KEGG:ns NR:ns ## COG: FN0201 COG1883 # Protein_GI_number: 19703546 # Func_class: C Energy production and conversion # Function: Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit # Organism: Fusobacterium nucleatum # 1 378 1 371 375 433 73.0 1e-121 MIFFEALSGILAESGFAHMTWQQGVMILISFVLLYLAIRKGFEPLLLLPIAFGMMLANLP EANLMREADPWYTQGVLRIIYGGVKSNLFPCLIFMGVGAMTDFGPLIANPISLLLGSAAQ FGIYIAFIIAIASGKFTPQEAASIAIIGGADGPTAIYVTNNLAPELLAPIAVAAYSYMAL IPLIQPPIMKALTTQKERETKMVALRKVSKTEKVVFPVVVILFTALLLPSVAPLLGMLML GNLFKESGVTERLSDTAQNALMNIVTIMLGTTVGATANGEIFLSLKTIIIICLGLVAFAF ATVGGILFGKVLYYVTGGKINPLIGSAGVSAVPMAARVAQVEGRKYNPTNFLLMHAMGPN VAGVIGSAVAAGVFLIIFGS >gi|289656177|gb|ADCS01000013.1| GENE 8 2790 - 3752 1243 320 aa, chain + ## HITS:1 COG:FN0202 KEGG:ns NR:ns ## COG: FN0202 COG1788 # Protein_GI_number: 19703547 # Func_class: I Lipid transport and metabolism # Function: Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit # Organism: Fusobacterium nucleatum # 1 318 1 319 321 433 65.0 1e-121 MSKIYSLKDAISKFVEDGDVISFGGFTTNRKPYAAVYEILRQGKKDFIAEAGPAGGDWDM MIGENRVKAYINCYTANSGYTNVSRRFRKAIEAGTLLFEDYSQDVEMLRLHAASLGLPYL PVKLMMGTDLVDKWGISKEERQKIDKLPNDKYVYVENPFNGDKKVVAVPVPVIDTAVIHV QVASPDGTCRIIGDEFHDVDIAVAARKTIVTCEELVSNEEIRLDPTLNSIPGFCVDAVVH LPYGAHPSQCYDYYDYDSSFYKMYDVVSKDEESFNNYMKEWVYDIEDHNQYLDKLGATRL LNLKPVKGFGYATNVLKEVK >gi|289656177|gb|ADCS01000013.1| GENE 9 3755 - 4552 1059 265 aa, chain + ## HITS:1 COG:FN0203 KEGG:ns NR:ns ## COG: FN0203 COG2057 # Protein_GI_number: 19703548 # Func_class: I Lipid transport and metabolism # Function: Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit # Organism: Fusobacterium nucleatum # 4 265 5 267 267 417 76.0 1e-117 MARYDNYTNKEMQAVTIAKQIKDDQIVIVGTGLPLIGASVAKRVFAPNCNIIVESGLMDC SPIEVPRSVGDNRFMAHCAVQWPNVRFIGFEACEWLHDKKRIIAFIGGAQIDPYGNVNST VIGDYNSPKTRFTGSGGANGIASYVNTVIMMQHEKRRFIEKIDYVTSPGWMDGPGGRDRA GIPGNVGPQMVVTDRGILKFDEDTKKMYLAGYYPTSSPEDVIENTGFDIDVSRAVLLDAP DEAVIKLIREEIDPGEAFIKVPKED >gi|289656177|gb|ADCS01000013.1| GENE 10 4565 - 6325 2209 586 aa, chain + ## HITS:1 COG:FN0204 KEGG:ns NR:ns ## COG: FN0204 COG4799 # Protein_GI_number: 19703549 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) # Organism: Fusobacterium nucleatum # 3 586 2 584 584 862 72.0 0 MSNYSMNVYFKNMSVIGSPLKATNEENIEAVRKVEEELAARIAEVQAEGKPDEKINEGGE WTALQRIAELIDEGTWCPLNSLYNPENNSNGSTGIIKGLGKINDKWAVIVASDNKKLAGA WVPGQAENLLRASDTAKRLRIPLVYVLNCSGVKLDEQEKVYPNRRGGGTPFYRNSELNQL GVPVIVGIYGTNPAGGGYHSISPTILLAHKDANMAVGGAGILGGMNPKGYIDEESANQIA DATMNVKKTTPPGSVGVHFAQTGFFREVYVEEEGVIEAIRNYMDMLPSYDLDFFRVDDPK APAFSANDLYSIVPMNPKRTYNIYDVISRLFDGSEFMEYKKGYGPEMVTGIAKVDGLLVG VVANTQGFLMNYPEYKEKSIGIGGKLYRQGLIKMNEFVTLCARDRLPIVWIQDTTGIDVG DDAEKAELLGLGQSLIYSIQNSNIPQLEITLRKGTAAAHYVLGGPQGNDTNAFSLGTATT EINVMNGETASVAMFSRRLAKDKKSGKDLQPTIDKMNALINAYVEKSRPQFCAEAGLVDE VVNMNLLRNYIVAFTQSVYQNPESICPMHQMLLPRVIRDFNNLYSK >gi|289656177|gb|ADCS01000013.1| GENE 11 6548 - 7357 944 269 aa, chain + ## HITS:1 COG:FN0206 KEGG:ns NR:ns ## COG: FN0206 COG1924 # Protein_GI_number: 19703551 # Func_class: I Lipid transport and metabolism # Function: Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) # Organism: Fusobacterium nucleatum # 4 260 3 260 265 371 75.0 1e-103 MGDSIYTMGIDIGSTASKCVILKDGKELIAKAVIDVGAGTSGPTRAMKSVLDEANLKRED IAFIMATGYGRNALEEADFQMSELSCHAKGAYFLFPRVHTIIDIGGQDAKALKIGDGGVL ENFVMNDKCAAGTGRFLDVIARVLEVDVSDLQDLDAKATKEVAISSTCTVFAESEVISQL AQGTSIEDIVRGIHFAIASRVGSLAKRVGLVDDVIMTGGVALNKGMVRALEENIGHKIKT SPLCQLNGALGAALFGYQKYKAVLRKSKI >gi|289656177|gb|ADCS01000013.1| GENE 12 7384 - 8712 1398 442 aa, chain + ## HITS:1 COG:FN0207 KEGG:ns NR:ns ## COG: FN0207 COG1775 # Protein_GI_number: 19703552 # Func_class: E Amino acid transport and metabolism # Function: Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB # Organism: Fusobacterium nucleatum # 1 442 1 441 442 816 87.0 0 MSGKILEKIPGKTPRPIEGHKSAAAVLRGVVDSVYGDAWAAKERGELVGWSSSKFPIELA KAFDLNVVYPENHAATTAAKKDGLRLCQAAEDMGYDNDICGYARISIAYAAGEPTDSRKM PQPDFVLCCNNICNMMTKWYENIARIHNIPMIMVDIPFQNTVNVPEEKVDYLVGQFEYAI KQLEELTGKKFDEKKFEEACKLANRTASAWLKACSYMKYKPSPLSGFDLFNHMADIVAAR CDVRAAEGFELLAEEFEQSVKEGTSTWEYPEEHRILFEGIPCWPGLRHLFEPLKNNGVNV TAVVYAPAFGFRYEGIREMAAAYCKAPCSVCIEDGVEWRETMAKENGISGALVNYNRSCK PWSGAMPEIERRWKEDLDIPVVHFDGDQADERNFSTEQYNTRVQGLVEIMDERKAEREAK GEEIYTTFDNTKETDWSKATIE >gi|289656177|gb|ADCS01000013.1| GENE 13 8721 - 9869 1352 382 aa, chain + ## HITS:1 COG:FN0208 KEGG:ns NR:ns ## COG: FN0208 COG1775 # Protein_GI_number: 19703553 # Func_class: E Amino acid transport and metabolism # Function: Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB # Organism: Fusobacterium nucleatum # 1 382 1 382 382 655 82.0 0 MSEIRELLEKFEHIANNPREQLDNYLAQGKKAVGIFPYYAPEEIVYAGGLVPMGVWGGQG PIVKAKDYFPTFYYSMALRCLEMALDGTLDGLSASMVTTLDDTLRPFSQNYKVSAGRKIP MVFLNHAQHRKEDFGKTYNARIFKQAKEELEKICDVEITDENLKKAFEVYNENRTLKREF VKLAATHPQTVKASNRCHVLKSSYFMLKDEYNALLKELNDKLKALPEEDWDGARVVTSGV ITDNPGLLQVFDDYKICIVADDVAHESRGFKVDIDMSIEDPMMALADQFARMDEDPILYD PEIWKRPKYVVDLAIDNDADGCLLFMMNFNDTEEMEYPSLKQAFEKESIPLIKMGYDQQM ADFGQVKTQLETFNEMVQLNRF >gi|289656177|gb|ADCS01000013.1| GENE 14 10651 - 10839 99 62 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MPELREMEIFTGRVPISYACYSTCSLISITTEIHFLPKSTKKKRYSFYNCNVSNLFRSFR RE >gi|289656177|gb|ADCS01000013.1| GENE 15 10984 - 11958 755 324 aa, chain - ## HITS:1 COG:all2237 KEGG:ns NR:ns ## COG: all2237 COG2207 # Protein_GI_number: 17229729 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Nostoc sp. PCC 7120 # 159 320 171 330 336 87 29.0 4e-17 MSTSKKYEYISDASFFVSDYCFCHEKKAEFLKLNPKENTGTGGVVEISPRKGLYLSCANW TPKISMERKYCIPKEFVKLYFLENGNVTLIQNGKKKSIIQHGVNLYLNRPASGRVLYDAM TPICYVSILIYGEYFDKIATVFPKNDLSLEDVFLWMYKDYNTPEITRVFMQIREKMIDGI TSAVYYESKTLEILSLISQRHCLKQQHNYENTYLTISQDELYILKNVDKVIRQTPLCPPS IEELCKISAMSQTKLRELFKKVYGVPLGRYIQQCKLEHSLILLSGNSLSITEIAEKLGYT NTSKFSAAFKKQYKKTPSEYRAST >gi|289656177|gb|ADCS01000013.1| GENE 16 11919 - 12104 98 61 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MRHLYIHTFWMCSNLIYLHPPWILHFVKLFNPKLRHYKARCRKSFVLYDFYKMVIILSFF L >gi|289656177|gb|ADCS01000013.1| GENE 17 12248 - 12478 414 76 aa, chain + ## HITS:1 COG:no KEGG:Fisuc_1734 NR:ns ## KEGG: Fisuc_1734 # Name: not_defined # Def: FeoA family protein # Organism: F.succinogenes # Pathway: not_defined # 2 73 1 72 73 66 43.0 3e-10 MLTLAQAEEGRDYTVKDINGDARFISRITSVGLTTGAILKVVRNVKRLPLLIYSRDTMLA INKQEANNIHVEVNDR >gi|289656177|gb|ADCS01000013.1| GENE 18 12475 - 14541 1392 688 aa, chain + ## HITS:1 COG:PAB0708 KEGG:ns NR:ns ## COG: PAB0708 COG0370 # Protein_GI_number: 14521269 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+ transport system protein B # Organism: Pyrococcus abyssi # 14 684 4 658 661 311 30.0 2e-84 MKQSTAILAKNAPLIGLLGQPNTGKSTLFNALTGARQHVGNWPGKTVEKKEGSFKYKGKA YTLLDLPGTYSLSANSEEELITRRNIIGNDIDLVFALVDASQLERSMFLLSEIVGIKQPV VVLLNMVDVAKSQGREINERRLSELLGVPVLPFVASRGTGMGDLYALLENGNYQQYILHE DALKKEYKAQIGESFTALEQKLQPFQTDTYTSMWLATKLLEGDKEITESIKNTVEGEDWS EIQELLAQMTSGLLKSADCKFNWLHQIAKDVIVKQREAETLLNSFDKVATSPVWGKIIAA CVMVLSIYASYKLGYKLSELSGIIYGYAYSVTYTGLSAINTPAFLIGFLCDAVLTGFFYA IMMTFFVFGAILIFGFIEEVGYMARIAYVFDNTMQKLGLHGKAIMPILMSFGCTIAGVNA TRVLDSGKQKLLSIITSWVVPCSAVWGVITLMGSAFFGSNVVWVILLLFAVTLLHMKFTA TLFGHAIIKPEDRAGLIMELPPYHRPNFKTLFKHVWLRVAGFLRRVIKLIVCITIIFWLL SYTPDGNITGSLIYKFGSAIEPFTMLFGLNWELFIAFLVSAIGKESALAVVMTLFEQHAA MGNIYNAAFMGIGVATTDVTANMLASVSIPQALAFMFAFFFNVPCYITVAATYAETHSIK WTVRIVAYYIASALLLAAIVYRIALLFF >gi|289656177|gb|ADCS01000013.1| GENE 19 14557 - 14793 298 78 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299143529|ref|ZP_07036609.1| ## NR: gi|299143529|ref|ZP_07036609.1| hypothetical protein HMPREF0629_00379 [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 78 4 81 81 134 98.0 1e-30 MLQSILAELRGSAVISVMDLANKLGTDRQSVMAALEQLQRMGYIIDMTKLSCGKRSCEGC SGCGSDFNKAIGAVYILR >gi|289656177|gb|ADCS01000013.1| GENE 20 14878 - 16212 1332 444 aa, chain + ## HITS:1 COG:lin2873 KEGG:ns NR:ns ## COG: lin2873 COG0534 # Protein_GI_number: 16801933 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Listeria innocua # 17 436 16 436 450 196 32.0 6e-50 MEQNIKTQLLTKKPIELLFQLSIPAVIGMTVIGLYPLMDGIFAGNIIGQTAMTACGVATT LTIFNNGVATLVGIGSASVLSRALGKGDQKTVDKIMGNLIFWVIWFSAIITIGGILLAPH FLSMVSATGEIKYYGIRYLRIIFLGSLFVNFTQSANMIMRGEGLMKKAMMIMGFGALLNI ILDPILMIIMGDYAIEGAALATITAQFVQAVVTLHYFLKKSKTVKIHRIKSNAVIKKEMF KIGSSAMMMNLLFMIQQTMLYKMAFQYGGNPNGILMSAAMRIYGFSFIPLWGMSQGLQPV VGTNFGAKLFDRVRKTVKVFSIGGIILAAIFWIPALLFSKQILYWFGVDADIIAQGVGNF RLFYSVFVLYGVMVMSITFFQSIGNGKKAGIIVAFRQLFLFIPAIILLPMVFGIKAVWFT QPLVDLIMIIIGIVMMINELKSMG >gi|289656177|gb|ADCS01000013.1| GENE 21 16931 - 17524 699 197 aa, chain - ## HITS:1 COG:MA4285_2 KEGG:ns NR:ns ## COG: MA4285_2 COG3291 # Protein_GI_number: 20093074 # Func_class: R General function prediction only # Function: FOG: PKD repeat # Organism: Methanosarcina acetivorans str.C2A # 28 188 648 817 1325 72 35.0 6e-13 MTNVWEYDDFIFKGDELKGMTKKGKDKVKVEGYTDMIIPATTPDGLPVKRIGENAFYRRK LTTVVIPETVESIGYDAFGVCSLVEVVIPDSVKKIEGFAFYRNKLEKVKFSNSLVSIAPS AFALNNLAEINLPETLELIDTSAFYKNDLEEVKIPKSVKKINMYAFNKNNIFEVEIPSSV EFLHERAFEPTTIIKRD >gi|289656177|gb|ADCS01000013.1| GENE 22 17766 - 18815 1096 349 aa, chain + ## HITS:1 COG:CAC2882 KEGG:ns NR:ns ## COG: CAC2882 COG0009 # Protein_GI_number: 15896136 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation factor (SUA5) # Organism: Clostridium acetobutylicum # 1 346 1 348 350 323 50.0 2e-88 MKTKVIKIDADNIKRENITEITNALKNGKLVVFPTETVYGLGANGLDETACKNIFNAKGR PGDNPLILHIAEISQLDDLVEDVSESARDLIDMFWPGPLTMIFKKSSKIPDVVSAGLDTV AVRMPSHKIAREILKDCMIPIAAPSANLSGKPSPTSFKRVFEDLDNKVDIIVDGGRADVG IESTVVDMTVNPPMILRPGKVTTEDLKIIIPDIKIDSATIDSSDGKIPKSPGQKYKHYAP RAEAYCFVGNLDNVVKEINKRISENKNLKIGVLATEETKDYYIGAHILINLGSRENMSEI ASNLFEALRECDDEKVDYIYTEGFELRGIGVGIMNRLLKACGGRVIFGL >gi|289656177|gb|ADCS01000013.1| GENE 23 18826 - 19455 997 209 aa, chain + ## HITS:1 COG:SP0745 KEGG:ns NR:ns ## COG: SP0745 COG0035 # Protein_GI_number: 15900640 # Func_class: F Nucleotide transport and metabolism # Function: Uracil phosphoribosyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 209 1 209 209 279 64.0 3e-75 MGNLIVTDHPLIQHKLTLLRRVDTSSKDFRELVREIATLMGYEVTRDLELSDIEIETPLE KCIGKEISGKKISIVPILRAGIGMVDGVLSVVPGARVGHIGMYRDPDTLKPVTYYCKLPK DVPNRTIILLDPMLATGGSLIAAIDEVKAQGATTVKTLNILAAPEGIEAVRKAHPDVDIY VAGIDRCLNDHGYILPGLGDAGDRLFGTK >gi|289656177|gb|ADCS01000013.1| GENE 24 19479 - 20492 1191 337 aa, chain + ## HITS:1 COG:CAC2875 KEGG:ns NR:ns ## COG: CAC2875 COG0472 # Protein_GI_number: 15896129 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase # Organism: Clostridium acetobutylicum # 3 335 8 344 344 247 49.0 2e-65 MSFLFAMIISFVLTPLVIRLANRFGFIDIPKDSRRVHKKPMPLAGGVAMYVATVVSILTF VKCTKEIIALIVGATIIVISGLIDDKKGLSPKMKIVFQLAAAITLVAANVKIEFFTNPFS FGETVIFLEMLSIPITIFWIVGITNTVNLIDGLDGLAAGVSMICSISLMAIAYKFGYIEM SIIASIIAGSCLGFLPFNFNPAKIFMGDTGALFLGFVLSYISVEGIMKSAAALTIFVPVL ILGVPVFDTTFAMIRRKLSGKSIVQADKGHLHHRLLALGLSQRQTVIVLYIISLIFGILA NIVADFNSKIGLMISILIVLAIILIATLTGMFKSKEE >gi|289656177|gb|ADCS01000013.1| GENE 25 20495 - 21604 1510 369 aa, chain + ## HITS:1 COG:TM1034 KEGG:ns NR:ns ## COG: TM1034 COG0381 # Protein_GI_number: 15643792 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine 2-epimerase # Organism: Thermotoga maritima # 1 368 2 368 378 427 56.0 1e-119 MKVLLVFGTRPEAIKMAPIVKELEKRKNIDSVVAVTGQHREMLDQVLKIFNIVPDYDMNI FKAGQSLTEITVNSMLGLEKILDKEKPDILLIQGDTTTVFAGAMAAFYKKVKIGHVEAGL RSGNLYSPYPEEANRKLTGVVTNYHFAPTNSNRENLLREGYDDKNIYITGNTVIDALKYA VKDDYRFEEDLLNNIDYKNKRVVLLTSHRRENIGKPMENIFSAVRDVVLSEDDVEVIFPV HLNPKVREIAHKYFDGVDKIHLIEPLDYLPFSNLMGRVHLVITDSGGIQEEAPALGKPVL VVREETERMEGVIANTARLVGTDYDKIYDSFKELLNNDNVYNEMAHSVNPYGDGTAAKKI IDIIENEFK >gi|289656177|gb|ADCS01000013.1| GENE 26 21701 - 23725 2172 674 aa, chain - ## HITS:1 COG:SPy2066 KEGG:ns NR:ns ## COG: SPy2066 COG4690 # Protein_GI_number: 15675831 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidase # Organism: Streptococcus pyogenes M1 GAS # 4 483 3 467 498 365 41.0 1e-100 MKKSKKMLAVALACSFVFSMAQNVFACTGVIVGKDLTTDGSFIYGRTEDYERNRTMRLVV HPRGEFKKGDKLVDVNNGFEYIHPADSAKFFSTPDSTKKPADMEQGVYDAAGYNEYGLGA FCTVSANYSKEIEAVDPYIENGVNEASMTTFILAHAKSARGAIELLAKTIDEKGASMGDI VVFGDKNEVWYMEIYSGHQYVAIKYPSDKFSVFPNAYWLGGVNLNDKENVIASKDIVKIA KDAKTYIETKDGLMDMAASYGPKELRDVNRSRVWSGIHALDSNSKVPYDAKRFELLNSLS ENSKKIDIKDVLNLMRNRFEGTQYKPCDNRKIRNNDKTNTYKRPIGSINTMQAHIFQIKD NYPAEAPGLMWMTLGSPLNIPFIPVFADINSSTKEFNNDSGVYDEGSYYWVASAVNDLVT SNRDALGKSTRDKILAFEDKIMTELPEIEKQWIEKYNSNKEEAAKFSTEKVTELSNKAFE LEMGLKNELSKVSKVDIDEHWANEAILSGLSKQLITGVDQLHFAPNNKITRAEFITILGR MAKVENGKYIEPKASDIEKGKFYTEYMNWAVEKGLIKGYSDNTVKPDEQLTREEMAVIFA NYINLSTDTDLLKDVKSETKFADENMISDWAKDSVALLTNMKILKGKDNNNFAPKAPLTR AEVAQIIYNLSNNK >gi|289656177|gb|ADCS01000013.1| GENE 27 24019 - 24183 68 54 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MYISIIIYGIGFTIWNFVYNYNKIFKNLNINAKNITYEGNKKNNCKLYSLILLH >gi|289656177|gb|ADCS01000013.1| GENE 28 24285 - 25469 1589 394 aa, chain + ## HITS:1 COG:CAC2873 KEGG:ns NR:ns ## COG: CAC2873 COG0183 # Protein_GI_number: 15896127 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA acetyltransferase # Organism: Clostridium acetobutylicum # 1 393 1 391 392 486 68.0 1e-137 MEKIVIASAARTPVGSFGGALKDVTAVELGVIAAKEALKRANVNPSEVDEVIIGNVLQAG LGQNVARQVTIGAGIPVEVPAMTINKVCGSGLRAVSLAAQIIKAGDAEVVLAGGCESMSR APYVLNKARWGSRMGDDTLVDAMIKDGLWDAFNNYHMGITAENVSEEFGIDRNMQDKIAC VSQNRASKARAEGVFKDEIVAVEIKDRKGNVKVIDTDEFIKDGVTEETLAKLKPAFKRDG GTVTAGNASGINDGAAMLVVMTEKKAKELGVKPLATILSYASAGVDPKIMGTGPIPSSRK ALEKAGLTVSDLDLIEANEAFAAQAGAVAKELGLDMDKVNVNGGAIAIGHPIGASGARIL TTLLFEMNRRDAKKGLATLCIGGGQGTALVVERD >gi|289656177|gb|ADCS01000013.1| GENE 29 25484 - 26263 1152 259 aa, chain + ## HITS:1 COG:CAC2712 KEGG:ns NR:ns ## COG: CAC2712 COG1024 # Protein_GI_number: 15895969 # Func_class: I Lipid transport and metabolism # Function: Enoyl-CoA hydratase/carnithine racemase # Organism: Clostridium acetobutylicum # 9 252 9 253 261 248 54.0 6e-66 MDYKFLDCKKDDGIFTIKICKEKTLNALNTELMAEIDSIFTEILEMDDVEVVIITGSGKA FVAGADISHMANIDTKEAFAFAKAGTTAFAKIERLNKPVIAAINGFALGGGCELALSCDI RIASLNAKLGLPEVSLGIIPGFGGTQRLPRTVGISKAKELIYTGEFISAEEALKIGLISQ VVEPEELMDKALEIAAKIIKNSKLAVRYAKEAINTGLQADIATGMNIESANFALCFATED QKEGMTSFLNKKAPKFSGQ >gi|289656177|gb|ADCS01000013.1| GENE 30 26282 - 27124 1167 280 aa, chain + ## HITS:1 COG:CAC2708 KEGG:ns NR:ns ## COG: CAC2708 COG1250 # Protein_GI_number: 15895965 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxyacyl-CoA dehydrogenase # Organism: Clostridium acetobutylicum # 2 280 3 282 282 332 64.0 5e-91 MKIAVIGSGIMGSGIAQVLAVKHEVVVRDIAPEALERAKERIKSGYEKNVAKGRMTEEEM TQALKNLSTSNDISDIKDADLVIEAATENPTIKKAIFKELDEVCKESTILASNTSSLSIT DIGASTKRPEKVIGMHFFNPVPAMKLVEVISGHITDENVKNTIIELSKEIGKTPVEVAEA PGFVVNRILIPMINEAVGIYAEGIATVEDIDSAMKLGANQPMGPLELGDLVGLDVVLAIM DVLYEEFKDPKYRAHTLLRKMVRAGLLGRKSGKGFYNYSK >gi|289656177|gb|ADCS01000013.1| GENE 31 27251 - 28465 1598 404 aa, chain + ## HITS:1 COG:FN1148 KEGG:ns NR:ns ## COG: FN1148 COG1301 # Protein_GI_number: 19704483 # Func_class: C Energy production and conversion # Function: Na+/H+-dicarboxylate symporters # Organism: Fusobacterium nucleatum # 1 386 1 386 390 395 61.0 1e-110 MNKKSFFNSLVFKLVLGILIGMGIGSIVSESIIAIIHSIKQILGDLIGYIVPLIILGFIT PAIVSLKDSAGKILSTTLVICYTSSVGAAIMSLIAGRIIIPNLNIASNTSGVNSIPESIF KLSISPIMPVMTALVTSVILGLAVLWTNSKSWENLLLEFNKIVLAIVDKVVITILPIYIA TTFAELAYEGAIIHELPVFLKVILIVIVGHYIWMALLYSLAGIISKTNPKEVFKHYSPAY ITALGTMSSAATLSVALKCARKSKVLDPKIRDFVIPLCANTHLCGSVLTEVFFVMTVSQV LYGKLPDVQTMIVFILLLGIFAIAAPGVPGGTVVASLGLITSVLLFDDTGTALMLSIFAL QDSFGTACNVTGDGAIALMVTGIFNKVPGRNGNPEYIPSVETEK >gi|289656177|gb|ADCS01000013.1| GENE 32 28800 - 30065 1802 421 aa, chain + ## HITS:1 COG:FN1147 KEGG:ns NR:ns ## COG: FN1147 COG3681 # Protein_GI_number: 19704482 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Fusobacterium nucleatum # 12 410 1 409 411 295 41.0 8e-80 MNYTELLKRELIPAFGCTEPIALAYASAKAARVLNNVPDKIEANVSGNIIKNANSVKVPG TDGRKGLEISIVSGALLGDADKELEVLAGIDKSKLIECDKLIEDGICKINLEEGIAGLYI DIKVKKDDDYARVVIEGGHTNITLIEKNSEILFKGSSERTIEEEIEFDFDKIYDYSKNVD YSEIKNILDMQIDYNYDIAKEGLDNQWGSNIGSIILDNYSKNYSERLVAYASAGSDARMS GCEKPVVINSGSGNQGITVAVPIIVYAKENNVSDDSLYRALIFANLIGLYMKQGIGKLSA YCGVVSAAAASVCGVGILKGEKREVLKETLSNALAVNSGLICDGAKPSCAMKIASSLRNA FLAYDQAKSENSFEAGDGIVKADLDSTIKTVGHIARYGMKTTDEVILNEMLNDETYIENI K >gi|289656177|gb|ADCS01000013.1| GENE 33 30094 - 30708 562 204 aa, chain - ## HITS:1 COG:CAC3094 KEGG:ns NR:ns ## COG: CAC3094 COG1392 # Protein_GI_number: 15896345 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate transport regulator (distant homolog of PhoU) # Organism: Clostridium acetobutylicum # 2 203 7 209 210 75 27.0 6e-14 MKKNNYFDLLIELGDQASKAASMLNRIYSEFNYNDMKYLMMEMHSIEHSADSTVHNLNKN LINQYMLPFKKEDIFAIGEAVDSIIDSVETLTQCFYTFAIKEMRTDVKNFIEIISESISV INEMLKKLKSHKNFKSLKEYIEKLEYLEDKADKIYIETTKNLFKEENDPIALMQWEEIIH QMEKCTDKCKHTGIVVSKAFFKSI >gi|289656177|gb|ADCS01000013.1| GENE 34 30846 - 32444 1778 532 aa, chain + ## HITS:1 COG:BH1407 KEGG:ns NR:ns ## COG: BH1407 COG1283 # Protein_GI_number: 15613970 # Func_class: P Inorganic ion transport and metabolism # Function: Na+/phosphate symporter # Organism: Bacillus halodurans # 4 526 7 533 543 277 35.0 4e-74 MSITYLFGLLGGLALFLFGMDLMSSALELVAGNKMNTVIEKLTSNPIKGVLVGVVVTAII QSSSATTVMVVGFVNAGLMTIYQAAGIIMGANIGTTITGQLVALNITKSAPIIAFIGFCM LKGFKKDKPKYFGQVLIGLGFLFMGMEFMSSSMAPLREEPEFIALMTKFQNPFLGILAGT TITAAIQASAASLGILQAIANQGLISLTSSMYIVCGFNIGTCITSVLSAIGTSKNAQRTA AVHVLFNMIGTIIFVALSFVIPIDRFIESISRNLPAAQIANMHTFFNLMTTILLFPFSKL LAKLAINLIRGKDQEVEDLSLKYINDRKFTDPILVFTNVRAETTRMFEIAKENFKLSMEI FSKYDSDKFDIIFRNEEILNYLNSQITKYIIDIMGNPMEDTLASNFTGYMRIVRDIERIG DHIKSIADNAKLSVERELKYSEESISEIDAIETTIMTMFNTIDEDLEKAERINRLRFFNQ KVENYTTTYRNYHMERMKTGDCDPESGLIFEKVLIALERISSYLSNSGKLAV >gi|289656177|gb|ADCS01000013.1| GENE 35 32478 - 34019 1763 513 aa, chain + ## HITS:1 COG:CAC1002 KEGG:ns NR:ns ## COG: CAC1002 COG1488 # Protein_GI_number: 15894289 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinic acid phosphoribosyltransferase # Organism: Clostridium acetobutylicum # 31 506 11 487 493 633 62.0 0 MRSCDRLQHYIFNYIINTIYIGGRRMPKSFDENNYTLLCDFYEFAMSNGFFEIGYKEKIV YFDMFFRSVPDNASYAIIAGLEQIIEYFENLHFSDEDIEFLRTKKIFNEEYLEYLRNFKF ECDVWAIPEGTVAFPQEPLIIVRGPIIQAQMVETMILLTINHQSMIATKANRIVSAADGR PVVEFGSRRAQGYTGANLGARAAYIGGCLGTANTLAEKIYGVPALGTMAHSWVQLFDSEY EAFKKYAEVYPQNCLLLVDTYDTLKEGIPNAIKVFNEVVVPSGNRPKGIRIDSGDIAYLT KKARVMLDEAGFEDAKIMISNSLDEFTIQNILHQGAKIDSFGVGERLITSKSSPVFGGVY KLTTIEEDGKLIPKIKISENVAKITNPGFKQLYRLYDKDTNKAIADVITLHDEIIDDSKE YEIFHPVYTWKRRVLNNFIAKPLLERIYDKGKLVYELPNIEDIKTKVQVELETLWEETKR LDNPQEYIVDLSYDLWKIKEELLGEHGKNIKRK >gi|289656177|gb|ADCS01000013.1| GENE 36 34025 - 34891 773 288 aa, chain + ## HITS:1 COG:FN0392 KEGG:ns NR:ns ## COG: FN0392 COG1032 # Protein_GI_number: 19703734 # Func_class: C Energy production and conversion # Function: Fe-S oxidoreductase # Organism: Fusobacterium nucleatum # 7 272 9 281 297 231 45.0 2e-60 MNYYGNVFRPPSEARSLIIQATIGCSHNDCTFCYMYKDEPFIIRKIDDIIAELETIRDYF PQFERVFIADGDALVLKTTDLLRLLEYINKNFPNVNRISSYATAGDINRKSVEELKQLYD NGLKMLYIGFESGDDEILADIKKGLTTEEYISAMEKCKKVKMQTSITIIAGLGGREKWKQ NAINTAKLITKTKPDYVSYLTMRIYKNAPIYEDYISGKFEMPSAEEILYEIRLFLENVDS EGTIFRSNHASNYVLLGGTLNKDISGLIETIDDTLRRKNFRPGMMRSL >gi|289656177|gb|ADCS01000013.1| GENE 37 34904 - 35644 532 246 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299143547|ref|ZP_07036627.1| ## NR: gi|299143547|ref|ZP_07036627.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 246 1 246 246 412 100.0 1e-114 MLYTLNLMDKNSFETMLNMQAIPVDWIADETFFNMSYEYVAAYEHYSSIKNIFNLIVLLQ RVEKDDLIWVRSESYYAIAKVKQSAQFNSFGAKIAIKAVVYEIFDIPSEVVMNLDKFLMS EIKDRKIILESNRIFNSFKEGEICIGDENSEESLQLEFVKDSSNMLEVRKKYDIMPYKKS KINISSKITKKKREVDNNFGELIIELYPPDKKEEIQKYDFFKSNQISLNSAEDKIYLQEI SKDENI >gi|289656177|gb|ADCS01000013.1| GENE 38 35735 - 36379 730 214 aa, chain + ## HITS:1 COG:CAC0418 KEGG:ns NR:ns ## COG: CAC0418 COG0546 # Protein_GI_number: 15893709 # Func_class: R General function prediction only # Function: Predicted phosphatases # Organism: Clostridium acetobutylicum # 4 214 6 216 216 141 39.0 1e-33 MVYLFDLDGTLLDTKEGIINGFLYGFEKIGYKDYNIDNIKNFIGPPLEDTFINKLGFSKN LSDKTIEYFRQYYKAKGKYENTFYDGVCDALEYIRRDNIVAVATSKPEKQSIEILKNRKM DGYFNFIGGATENAERSKKHDVIEYVLKKLEISSREKVYMIGDRYSDINGAKQSDIKSIG VTWGYGSRKELLDCKADYIVDNAKELNELIQKIK >gi|289656177|gb|ADCS01000013.1| GENE 39 36397 - 37044 807 215 aa, chain + ## HITS:1 COG:L169795 KEGG:ns NR:ns ## COG: L169795 COG2860 # Protein_GI_number: 15673892 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 11 214 11 218 219 124 39.0 1e-28 MLNYSEIDAVLEIIGTIAFASSGAMVGIRKGMDLFGILVLGIVTALGGGCVRDIILGITP PGMFVNSSYAIQALISSLILFMIFYVKSDYLNSKALKKYEDFLMILDAIGLGAFTVTGIN TAIGTGYAEKEFLLIFVGMLTGVGGGIIRDVFSNSIPSIFKEQIYAVASFFGACFYVLFI DKLDADTVMILSAMIVIIIRIFAVKKNLHLPKVKI >gi|289656177|gb|ADCS01000013.1| GENE 40 37056 - 37952 787 298 aa, chain + ## HITS:1 COG:BS_yitS KEGG:ns NR:ns ## COG: BS_yitS COG1307 # Protein_GI_number: 16078175 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 289 1 283 283 173 33.0 5e-43 MNVKIITDGGCDIPKEYIKKYDIEILPIAVNDGIEEYFGDDELSSNELFKNMRNKKVYGT SQVGNMDYIQCFEKYASENREIIYISLSSGITGTYDAALRIREEVLKKYKSAKIHVFDSF CATCGLGLMVHRAAMMAADGRDSKYILNALEFLKAHQEHVFSVTTLEFLVRGGRVSKGSA AIGGILNIKPIMELTKTDGKITSLDKARGENNLYKKLSEELAKKSGGKFNTNQSIIIAYG DDVSFAERLKNHILSEYNISEQQIYCNQLGTVIGAHTGPDFVGVFFLSKLFEDYNEVR >gi|289656177|gb|ADCS01000013.1| GENE 41 38208 - 38981 1140 257 aa, chain + ## HITS:1 COG:FN0439 KEGG:ns NR:ns ## COG: FN0439 COG1540 # Protein_GI_number: 19703777 # Func_class: R General function prediction only # Function: Uncharacterized proteins, homologs of lactam utilization protein B # Organism: Fusobacterium nucleatum # 1 257 1 257 257 379 71.0 1e-105 MTYYVDLNSDIGEGYGAYKMGMDEEIIKHVTSINLACGWHAGDPLIMDKTVKLAKEFGVN VGAHPGYPDLLGFGRRNLAITPEEARCYMLYQTGALIAFTKAHGIKLQHMKLHGGFYNKA CADKALADAILDGIEALDKDIILMVLSGSYIAKAGKERGFRVSEEVFADRGYNVDGSLVN RSLPGAFVKDPKDAIPRVIRMIKEGKVTTAAGEEIDIKADSICVHGDNPHAIEFVKQIRA GLAEADITIAPIQDFIK >gi|289656177|gb|ADCS01000013.1| GENE 42 38994 - 40193 1671 399 aa, chain + ## HITS:1 COG:FN0438 KEGG:ns NR:ns ## COG: FN0438 COG1914 # Protein_GI_number: 19703776 # Func_class: P Inorganic ion transport and metabolism # Function: Mn2+ and Fe2+ transporters of the NRAMP family # Organism: Fusobacterium nucleatum # 5 399 3 394 395 425 69.0 1e-119 MEKNKKGNLSVLLGAAFLMATSAIGPGFMTQTATFTNGLKADFAFVILVSIVMSYITQLN VWRVIAVSRLRGQDIANKVLPGLGYFIAFLVALGGLAFNIGNVGGAGLGINVIFGLDPKV GAAIGGILGVIIFTSKSAGKAMDKLTQILGAAMIILIAYVCATTAPPVSEAAKRMVAPSD MGATVPAILTLLGGTVGGYIVFSGGHRLIDAGVTGEENLSEVNKSATLGIVVALVVRILL FLAVLGVINSGGVLDEKNVAASAFRIASGEIGYKIFGIVFTAAALTSVVGAAFTSVSFLK TLFKPIGERANLVTILFIVFSTIIFIFIGQPQKLLVLVGALNGLILPITLAVMLIASKKK SIVGEYVHSNILFYLGWVVTVVSAYIGVTTFVSKMSTFF >gi|289656177|gb|ADCS01000013.1| GENE 43 40208 - 40954 900 248 aa, chain + ## HITS:1 COG:FN0437 KEGG:ns NR:ns ## COG: FN0437 COG2049 # Protein_GI_number: 19703775 # Func_class: E Amino acid transport and metabolism # Function: Allophanate hydrolase subunit 1 # Organism: Fusobacterium nucleatum # 1 248 14 262 262 295 60.0 5e-80 MYNNVKYLIAGDRALIMEFGNEISKDINSRIRMTIEKIEKSNIEGIVELVPTYRSITVSY NPLIIKYDELVEKLREFEKHKEESDGDTIRLIEIPTVYGGEYGPDLKFVSEHSGLNEEEV VEIHTGTDYLVYMMGFAPGFTYLGGMDERIATPRLKSPRLKIPGGSVGIAGAQTGMYPSD SPGGWQLIGRTPLKLYDEANDPPVFINAGDYIRYVKIDEAEYEKIKSEVENGTYEVSIKT VDRGELNG >gi|289656177|gb|ADCS01000013.1| GENE 44 40947 - 41891 1380 314 aa, chain + ## HITS:1 COG:FN0436 KEGG:ns NR:ns ## COG: FN0436 COG1984 # Protein_GI_number: 19703774 # Func_class: E Amino acid transport and metabolism # Function: Allophanate hydrolase subunit 2 # Organism: Fusobacterium nucleatum # 1 312 1 311 336 305 51.0 8e-83 MAKIKVLNGGIYTTVQDYGRIGYQKFGIAPAGVMDEYSYELANALTGNKRGEAVLEITYL GPMLKFEDEVVIAVTGANVSPKIDGVPINMYESYKIGAGSTLSFGKLIDGVRAYLAFGGE IDVPVVNGSKSTLVKSKIGGYEGRPLKAGDEFEVKVNEAAKEGKILPDKYKAQINKFNVI RVVLGPQDDYFTEDGIKKLFRSGGYTLTKNIDRMGIRLDGAALEHKTAADIISDGTVMGA VQVPSDGHPIILMADRQTTGGYTKIGTVIKEDIAKIAQMGAMNKLCFTEISLSDAQKEYE KFEQKILDARESVK >gi|289656177|gb|ADCS01000013.1| GENE 45 42034 - 42789 830 251 aa, chain + ## HITS:1 COG:CAC1512 KEGG:ns NR:ns ## COG: CAC1512 COG2116 # Protein_GI_number: 15894790 # Func_class: P Inorganic ion transport and metabolism # Function: Formate/nitrite family of transporters # Organism: Clostridium acetobutylicum # 1 248 1 248 256 152 38.0 7e-37 MYAEIIKNISGGALNKFKIYDSSKIKYIISSMLAGFFVGLGLISMGASISVFGGLDFPVV KFTNGFIFSLALSLVIMAGGDLFTGNVLVLSTGAMTKTIRTSDAIKVCALSYIGNFLGAL LVSFLYMGTGIKDSGVCNAIIELAKVKASFAFVPMIFKGIMCNILVCLAVLCCIKMKSES AKLIMVFWCIMPFVILGFEHSIANMTCFIIAKAMSPEITIAMIMNNLVPSTIGNIIGGLL VAGGYYFLGRE >gi|289656177|gb|ADCS01000013.1| GENE 46 43046 - 44311 1982 421 aa, chain + ## HITS:1 COG:FN0488 KEGG:ns NR:ns ## COG: FN0488 COG0334 # Protein_GI_number: 19703823 # Func_class: E Amino acid transport and metabolism # Function: Glutamate dehydrogenase/leucine dehydrogenase # Organism: Fusobacterium nucleatum # 3 421 18 439 439 508 61.0 1e-144 MTDTLNPLVAAQEKVRVACEKLGCDPAVYELLKEPKRVIEISIPVKMDDGSLKVFKGWRS AHSDAVGPAKGGVRFHPNVNMDEVKALSLWMTFKGGALGLPYGGGKGGICVDPSELSQRE LEQLSRGWVRGLYKYLGDRIDIPAPDVNTNGQIMSWFVDEYVKLNGERMDLGTFTGKPIA FGGSEGRNEATGFGVAVVVRESAKRFGIDIADAKIAVQGFGNVGSFTVKNIERQGGKVCA IAEWDKKEGNYALYNENGMSFKELIAYKNEHKTLIGFPGATKISDEEFWAKEYDILVPAA LENVITGDRAKVINAKLVCEAANGPTTPEGDKVLTERGIALTPDILTNSGGVLVSYYEWV QNQYGYYWTEAEVEEKQEADMMKAISGVFGIADEYKVPLREAVYMYAIKSIDTAMKLRGW Y >gi|289656177|gb|ADCS01000013.1| GENE 47 44343 - 45278 930 311 aa, chain + ## HITS:1 COG:FN0623 KEGG:ns NR:ns ## COG: FN0623 COG0679 # Protein_GI_number: 19703958 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Fusobacterium nucleatum # 1 306 4 313 318 133 28.0 5e-31 MENLQIGLNIIFPIFFVIFVGYFLKTKKILDENFISKSTTLVFYVALPAKLFFDIKNSKV NSLDIKYVLYLLLGTLLIFGLSWISGYFFIKDKKKLSAFVHCSYRSNFVYIGIPILDLIF SEPAMDSILIVIIFGLTLYNMLAIILLTYYGDKKLSITDFFIKVIKNPMIIAIALGLCVK FLNIPIYSGIESGASIIAKLCTPLSLILIGGSLNFNGTFSDVMIICVDTLIKDVIGAAIL VPIGFLIGFTNSQLVVAYIFFGTPCALNCFIMGKQMGSDANLTSQIITASFVFSIVSYAV GIAILKYYSII >gi|289656177|gb|ADCS01000013.1| GENE 48 45311 - 45418 99 35 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTNLIDNLIKSGGVNGHDETRQPIVVPNPTERSGR >gi|289656177|gb|ADCS01000013.1| GENE 49 45475 - 46647 1570 390 aa, chain + ## HITS:1 COG:BS_metK KEGG:ns NR:ns ## COG: BS_metK COG0192 # Protein_GI_number: 16080107 # Func_class: H Coenzyme transport and metabolism # Function: S-adenosylmethionine synthetase # Organism: Bacillus subtilis # 2 386 4 394 400 541 66.0 1e-153 MDKWLFTSESVTEGHPDKVCDQISDAVLDAIIKEDKNARVACETVASTGMVLITGEITTS TYVDFTKIVRDTLREIGYDRAKIGFDADTCSVLCAIKEQSPDIAMGVDRFKEAGVDELDS FGAGDQGMMFGYACNETEEYMPLPISLANKMSKRLSDVRKENVIDYLRPDGKTQVTVEYE NLVPKRIENVVVSTQHNPDVSLETIREDIIREVIKKTVPETMMDENTKIYVNPTGRFVMG GPMADAGLTGRKIIVDTYGGFARHGGGAFSGKDPTKVDRSAAYFARYIAKNIVASGLAEK CEIGLAYAIGIARPTSVYVQTFGTGKLSDNEIEKIVMDNFDARPAAIIRDLDLLRPIYKQ VASYGHFGRNDLDLPWEKLDKVEKLKAYLK >gi|289656177|gb|ADCS01000013.1| GENE 50 46728 - 48914 2124 728 aa, chain + ## HITS:1 COG:CAC2854 KEGG:ns NR:ns ## COG: CAC2854 COG0507 # Protein_GI_number: 15896108 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member # Organism: Clostridium acetobutylicum # 1 720 1 725 739 558 46.0 1e-158 MIEIKGVVEKIIYRNEDNGYTVARFSTEEESITINGSCAEIKTSMEYELKGDFIFHKKYG EQFKFESIEEILPQSENGIINYLSSGIIPFIGEKTAKNIVDKFKTETLKILEEDTERLLE VDGIGPRKLDKIKSALLENRGLRRLTLFLNKHELGTTLAVKIYKEYGERAIQIIKENPYK LAEDISGVGFKKADKIAMSIGEFRGSSFRNRAALKYILSLATLEGHSFLPKDILIKRTHK LVGDNIEQLENELLNLSLDDRFFIEQSDGEICCYYAPYLRAENYISGKIKELVSGKFEYD TNIDEILKKIEERNEIKFATNQVIAVREAVEKGVLIITGGPGTGKTTTLKAIIEIFESMG KSVKLAAPTGRAAKRMKEATNRDASTIHRLLEIRVPDDDRINYGYEEEVELDCDVLIVDE VSMVDLGLMNTLLHSIKKGTRLILVGDKDQLPSVGAGNVLSDLIESKRVSVVNLNEIFRQ KEQSSIIKNAHLINNGILPEISNSGDFYMISEQNEKKSLEVIKELVSRRLPQYYGVNSNK IQVLAPMKKGNVGIYSLNKTLQEVLNPKGDEIIFGDNVFRVGDKVMQTKNNYNLEYKIES EFYLEEGEGVFNGDIGYVVEIDIENKSLVVLYDDVKKVKYEYSDLDELILSYACTIHKSQ GSEFDIVIIPLHFAPYILLTRNLIYTAITRAKKLVVLVGEYKYLDIMVKNNRISKRYSNL CKKLMKDD >gi|289656177|gb|ADCS01000013.1| GENE 51 48907 - 49530 599 207 aa, chain + ## HITS:1 COG:CAC2852 KEGG:ns NR:ns ## COG: CAC2852 COG1040 # Protein_GI_number: 15896106 # Func_class: R General function prediction only # Function: Predicted amidophosphoribosyltransferases # Organism: Clostridium acetobutylicum # 7 204 25 224 226 68 27.0 9e-12 MINLFKKECYFCDSKEIFEYGICKNCYDNLKGDILFSKKLEYVDDVIVAFEYNNFLRDKM LSYKFKDKTYLYKFFSEVLTEKLFKEKLSMKYKNITCVPMHKNALKKRGYNQSELIAKQV AKNTLLEFVAPVEKIADVPEQAGIKEFFGRIENIKGVFRFAGEKVESIIIVDDVITTGAT VNEMARVLKENGIKKVAALVAATSQNL >gi|289656177|gb|ADCS01000013.1| GENE 52 49511 - 50446 861 311 aa, chain - ## HITS:1 COG:CAC0485 KEGG:ns NR:ns ## COG: CAC0485 COG1295 # Protein_GI_number: 15893776 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Clostridium acetobutylicum # 15 287 9 275 283 157 36.0 2e-38 MLNKIKKNFYNNLNKNYVIFFDKFLYRFAEHRIVEISASLAYFLILSIFPFLIALLNIIN FTNFLYSDNIIEALSYLPEDITKIAMNFIKEIYSGSSGSLFSISVLLGLWSASNGFKKII KNINLAYGFSEKRGILKTKLLSLLFTIALIIMILLLLLTQVFGETIINMLINYVGLGEDI TYLWHILSFIIPFIYMFITFLLVYKYSPGTDTRDLLKFSLILPGAIFSTISSVFATNLFG YYVGNFAKYSVTYGSLGGIIILLIWLWLMSMIILMGGEINATLFSMKYFKSTTLWPRYES VLKNFIKDFEK >gi|289656177|gb|ADCS01000013.1| GENE 53 50521 - 51213 884 230 aa, chain + ## HITS:1 COG:BH1153 KEGG:ns NR:ns ## COG: BH1153 COG0745 # Protein_GI_number: 15613716 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Bacillus halodurans # 2 228 4 231 232 220 50.0 2e-57 MAYNILVCDDEKDIVKAIEIYLKAEGYEVFKAYDGLEAIEIINREQIHLCIIDLMMPKVD GISAILKIREKHNIPIIILSAKSEITDKIIGLNVGADDYIVKPFNAIELVARVNSVLRRF TSLGSADIDKDIYKAGRVVIKNSSKEVFIDDEAVNLTPYEYKILLLLMKNKSRVFNSDEI YRQVWEDEAHDVKKIISVHISHLRDKLEINPRKPDLIKSVYGMGYKIEDK >gi|289656177|gb|ADCS01000013.1| GENE 54 51213 - 52433 1249 406 aa, chain + ## HITS:1 COG:BH1154_2 KEGG:ns NR:ns ## COG: BH1154_2 COG0642 # Protein_GI_number: 15613717 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Bacillus halodurans # 161 394 35 266 274 162 39.0 2e-39 MRLSERVKKSLYKIYLYLRDNDFMESLLFDMLLICGLIYGKYGYFIGAFLFVCFFIWKIY RRQVIKSLFTVKLFLSYSENYLFLIFGIINLMLIFEMLFLEYGEFETFVVLCFFKLIFVG ENVYVQNFLLTSMIEDLYSFGEAEYISILANNKTKESLRLLEEIREQIRSSMKKSLEAEH LKTELITNISHDLKTPLTSIINYTDILSKKEAMDDEAKDYIQVLGRNSERLKSLIVDLIY ASKTGSGNIKVEKEFIDFNELLLQIYGDFDEILKRKNVEFIYEYEEEDIVIYTDGNILSR IVQNLISNAYKYSKSGTKIYAETFSSDEIIKFSMRNTSKSKIKLTQEELLGEFVKSDRER NTEGSGLGLYITKNLVELLGGKFNIIIEDEDFNVELILNRDLGEYD >gi|289656177|gb|ADCS01000013.1| GENE 55 52430 - 53176 690 248 aa, chain + ## HITS:1 COG:BH3294 KEGG:ns NR:ns ## COG: BH3294 COG4509 # Protein_GI_number: 15615856 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 1 247 10 250 254 93 29.0 3e-19 MKKIIKILIFIVLVTLAVWVGYKFYITKTDDVSKKAIERIQQKNDKVITENKEENEIFEK KKLELEELKKINKDIVAILDIPDTHVYYPIFKSEDNSYYMRRNIYCNYDLNGSIFMDYEC EVDTSTNLILYGHNMSSDNMFSDLIKYKEKEFFDSHRTIYLYTLNDVREYKVVGSYIIDL TNEDKFFNFNIYINKSDAMNSIDYIDNLNNMTVQSENVYINEDSKLITLSTCTYESKNAR LLIVGVLQ >gi|289656177|gb|ADCS01000013.1| GENE 56 53231 - 54940 1024 569 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|299143565|ref|ZP_07036645.1| ## NR: gi|299143565|ref|ZP_07036645.1| hypothetical protein HMPREF0629_00415 [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 569 1 569 569 898 100.0 0 MSKIERLIAETKFLFAKNFYSQIDNFAKIKADKNDEIYKFLTVTRGTKELKAFIILDAHR NEQRILEMLKFFCKSNKKLNDTMLSSIASSLINSYCTVIEVLSVDEDYCVIYDKLLNKSF KVESASNLSDRELLFARLIEIDGYYYVISILEVLDESFELLFTSKIYNIFKAYAEERNLK SLSDENKIEILKIYLADIFLIFASSTSEFMELQNTELSEKDRTLAINTFFNNEDSKIFER FLLYANSKLEYEEEMCIYFFNIVYIECLAPIGKNFSDFENYNFIDIFENATKNGFIYTNS EFKNTITLLKYYYEFALKTSNKFLKPYEELKYILKYIFLYQNNLSKSFNGFYFDENLFEL IPNNFECTLLKNYITFTDLFNDLKLQISENKNMLTNASVNKLATALNLKTSREIKTPNQT HYPLINFFYNFSVTKSILKNENGDFDFSERLMQFLSLDGEEQYAIFIETIFNRDFLLTYL NEKKVNIIFDNLKIIFETLYHKDNIETSDLNIDNEYSYLLDILQRLDIISISNTKVTITN NGKAILNYFSKNFVNSNVISINNYKKSIS >gi|289656177|gb|ADCS01000013.1| GENE 57 54937 - 55836 885 299 aa, chain - ## HITS:1 COG:BS_ygaE KEGG:ns NR:ns ## COG: BS_ygaE COG4129 # Protein_GI_number: 16077936 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Bacillus subtilis # 11 187 2 178 353 68 27.0 1e-11 MNISNINFKKKIGMRTIKTALAVVIGLYLSMLLNLNTPIFTSIATISTMKSSFSESFIDV KKRLFTSIFGVILGSILGMFKTHQLLNPIIAGLGIIIIIYILQATNVKDMTVLSCVVFMA SFISDSKLIYGFDRVLGTFLGVVISVSINYLIATPNVYEHFINNSRDTLKKSKNFMLQLI MNEEHSISEFEESFANTKKSYELLISELDTPIHARFDFYKAERIMELFTDFNNRFQLLNS IDSRPDMTSDNCNLIEDIFFIKLLENGKLKGDLNTIYNYHLHKILLNLSIVEKLIGDNK >gi|289656177|gb|ADCS01000013.1| GENE 58 56042 - 56575 444 177 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|28210085|ref|NP_781029.1| SSU ribosomal protein S30P [Clostridium tetani E88] # 1 173 1 173 176 175 50 5e-43 MLLKLVGKNMELTESLKKQAEKKFSKIDKFFDEEVEARAVFSTQKGSQTVEVTIFLPGTI LRAEETTQDMYASIDKVVDVLERQIRKYKTRLKKRYQGNSKTIRFENVREAEVEEESSVI VKRKQLLLRPMHEEEATLQMELLNHNFFIFLNTETDKIEVVYKRHDDNYGIIDIDIE Prediction of potential genes in microbial genomes Time: Fri May 27 07:24:42 2011 Seq name: gi|289656176|gb|ADCS01000014.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.14, whole genome shotgun sequence Length of sequence - 13945 bp Number of predicted genes - 16, with homology - 16 Number of transcription units - 6, operones - 4 average op.length - 3.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 2 - 61 7.5 1 1 Op 1 8/0.000 + CDS 91 - 1917 2173 ## COG4666 TRAP-type uncharacterized transport system, fused permease components 2 1 Op 2 . + CDS 1914 - 2867 1043 ## COG2358 TRAP-type uncharacterized transport system, periplasmic component 3 1 Op 3 . + CDS 2915 - 3226 421 ## gi|299143570|ref|ZP_07036650.1| conserved hypothetical protein 4 1 Op 4 . + CDS 3235 - 3648 430 ## gi|299143571|ref|ZP_07036651.1| putative DNA topoisomerase I + Term 3651 - 3685 2.2 + Prom 3678 - 3737 9.1 5 2 Tu 1 . + CDS 3809 - 4462 308 ## PROTEIN SUPPORTED gi|241889384|ref|ZP_04776685.1| 30S ribosomal protein S8 + Term 4567 - 4601 4.5 6 3 Op 1 . + CDS 4810 - 6045 967 ## COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif 7 3 Op 2 . + CDS 6048 - 6773 629 ## FMG_0105 hypothetical protein 8 3 Op 3 . + CDS 6830 - 7459 449 ## Ccel_2796 hypothetical protein + Prom 7470 - 7529 6.7 9 4 Op 1 25/0.000 + CDS 7555 - 8511 1327 ## COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin + Term 8520 - 8554 4.5 10 4 Op 2 42/0.000 + CDS 8556 - 9287 241 ## PROTEIN SUPPORTED gi|90020817|ref|YP_526644.1| ribosomal protein S16 11 4 Op 3 10/0.000 + CDS 9280 - 10161 1048 ## COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components 12 4 Op 4 3/0.000 + CDS 10158 - 11303 1074 ## COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components 13 4 Op 5 . + CDS 11293 - 11712 465 ## COG1321 Mn-dependent transcriptional regulator + Term 11720 - 11757 3.3 - Term 11701 - 11751 8.3 14 5 Tu 1 . - CDS 11752 - 12117 301 ## EUBREC_0201 hypothetical protein - Prom 12191 - 12250 10.2 + Prom 12022 - 12081 10.4 15 6 Op 1 . + CDS 12252 - 13589 1755 ## COG1253 Hemolysins and related proteins containing CBS domains + Term 13645 - 13678 -0.8 + Prom 13627 - 13686 4.8 16 6 Op 2 . + CDS 13708 - 13945 165 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs Predicted protein(s) >gi|289656176|gb|ADCS01000014.1| GENE 1 91 - 1917 2173 608 aa, chain + ## HITS:1 COG:BH2945 KEGG:ns NR:ns ## COG: BH2945 COG4666 # Protein_GI_number: 15615507 # Func_class: R General function prediction only # Function: TRAP-type uncharacterized transport system, fused permease components # Organism: Bacillus halodurans # 40 604 67 643 656 380 41.0 1e-105 MLTDRKFNRDGIFISSLLVLWVIIQILINTFIYVDDMVLRCIHIIFLVLFANLLYGNEKK YIKLLFVAISIFVFGYVICNYSLISERGGYTNKIDLIIATLGFIVIIVTGLKTNKNLTLL ALFFVSYLYWGKFITGPLSHSGFSYKRVLNFMFWGTQGIFGIGVGVSATYIFLFVLFGSF LKHSGFSNFINDFSLALVGKSPGGPAKVAVIASAFMGMINGSAIANVATTGTITIPMMKQ CGYDKNFAAAVEAASSTGGQFCPPIMGAAAFVMAEFLQIPYSKVMISAILPAFLYYFMLI FSVHLEAKKLGLKSADEEVILSKVLRERVYLFAPIIVLLIMMAIGYSPIECAVFSIFVTI VVSSIKSATRMDLQKIVEAAKEGALSAINVGIACVLIGLIIGSVSLSGLGLNFGNLILKI VKDTNLYMGSFMVMVMSVILGMGVPGVAAYVIVVSVAVPIMISLGANPISAHLFCLVYAC LSNITPPVAISSYVASSIAKSDMVKTSLIAVKLGISGFIIPFFFINNDVLLLQTNDLLLT IRVVIGAIIGIGAIAASAEGYFYRKMKIYTRITLFILGILLIDVGIYSDIIGIIGILVIY YWERRFRD >gi|289656176|gb|ADCS01000014.1| GENE 2 1914 - 2867 1043 317 aa, chain + ## HITS:1 COG:AF0635 KEGG:ns NR:ns ## COG: AF0635 COG2358 # Protein_GI_number: 11498243 # Func_class: R General function prediction only # Function: TRAP-type uncharacterized transport system, periplasmic component # Organism: Archaeoglobus fulgidus # 24 317 37 330 330 167 34.0 3e-41 MKKSLIILLLTLSIFTITSCSKNEQMAINIPTASTTGALYPLGFSIADLWSEKAGVKATA QASNGGVDNLNLVYDGDAQVSLGVSSIVYQSYHGEGVFEGRENKKLRIIAGLYLNPNQIV VRSDSGINSISDLKGKNFSAGAPGSTTEGETNLHLEAYKIPIEDVNIQRVAPAESADMMR NKKLDGVWIMAAAPTASVTEMTSSMDAKLLSVDQEIIDVLNKNKPWYASYIIPAGTYRNQ TEDINTSAIKMVLYTTTDIPEETVYNMTKVFWENIDMLKEKNKGLKDVTVKEAVNDIANL PIADGAAKYYREIGVME >gi|289656176|gb|ADCS01000014.1| GENE 3 2915 - 3226 421 103 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299143570|ref|ZP_07036650.1| ## NR: gi|299143570|ref|ZP_07036650.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 103 17 119 119 152 100.0 7e-36 MVNKIVFESENLEYEKQNNENDLVYEKLINLINNGKINEAEDYLFDSINLSDMKFLKIGL LFYKRLNEYDNDELKKFDFTRREIKSGLEDILDEYGVNFTGIM >gi|289656176|gb|ADCS01000014.1| GENE 4 3235 - 3648 430 137 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299143571|ref|ZP_07036651.1| ## NR: gi|299143571|ref|ZP_07036651.1| putative DNA topoisomerase I [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 137 1 137 137 233 100.0 3e-60 MGNFVREFFNIETIEHPKLNTLNEILEILQDDYLNLLAKNYNLDGTIQRNKLIDSLKFAI LTQFRNKIINFSVAEHKSFNEFYQGAVDYSDENVYINLKKFTGLGILFLFTVNEGQLYSF KIPDEIITIYEELLQSV >gi|289656176|gb|ADCS01000014.1| GENE 5 3809 - 4462 308 217 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|241889384|ref|ZP_04776685.1| 30S ribosomal protein S8 [Gemella haemolysans ATCC 10379] # 12 216 11 216 216 123 34 8e-28 MLYNSIFKDNIFNQSMALKYGFKKENNHYLLQKEIGIGGFLAKFEIWDKQFKVTILEKPD MIKYLPFEIYNASGEFVSKIRFEVDLLIDEIVDLCFDSISVRKELLRYVMAEFGTVPEKP WDNYDSYCTLKTNLSKKWYGVFMIIPGSYLGIKKNENVDVLNIKLEPDEVKKLIDNKQYF PAYHMNKKHWITILLNRNTDLNIIKELISKSFYLVEN >gi|289656176|gb|ADCS01000014.1| GENE 6 4810 - 6045 967 411 aa, chain + ## HITS:1 COG:CAC3343 KEGG:ns NR:ns ## COG: CAC3343 COG4277 # Protein_GI_number: 15896586 # Func_class: R General function prediction only # Function: Predicted DNA-binding protein with the Helix-hairpin-helix motif # Organism: Clostridium acetobutylicum # 1 404 1 407 440 455 54.0 1e-128 MELTEKLKILSDAAKYDVSCSSSNSDRKNKGGLGDVKSCGICHSWSEDGRCISLLKILLT NKCIYNCEYCVNRASNDTLRVEFTPREIADITINFYKRNYIEGLFLSSGIVKSPDYTMEK LIEVAEILRIEQNFNGYIHIKAIPGANEDLIKRLGLLVDRISVNIELPTSKSLALLAPQK SYEKIFLPMNSIKNNIFENRYDRKKFRNAPLFVPAGQTTQMIVGASREDDLAIINRAEEL YNSFELKRVYYSSYVPVIKSKYTEGIEQSSLLREHRIYQADFLMRFYGFKSNDILKKSNP FFDLRIDPKANWAIDNIEIFPMEINSATYEELLKIPGFGPSYAKRIIKARAYSALGYDDL RTLKISTKRAKNFITVKGVYRGINYSTKESLKDYMSLSDSDNFKQISIWDV >gi|289656176|gb|ADCS01000014.1| GENE 7 6048 - 6773 629 241 aa, chain + ## HITS:1 COG:no KEGG:FMG_0105 NR:ns ## KEGG: FMG_0105 # Name: not_defined # Def: hypothetical protein # Organism: F.magna # Pathway: not_defined # 1 240 1 240 247 201 47.0 2e-50 MNYIYDGSFEGLLCTLFDAYKIIDTVNIVKKSNQVNFFEDEAVVISDTCVSNRVKKSIIQ KFSYRFFIEIYICYLSDTVNKENIIARTVKGVYKNGINFLNSANENVVEFNKIIKSVYRE IHRYQGLLRFREVQEEFLFAEFEPKNDILEILSVHFKKRMPNEKFMIHDVLRKKCVISDK GNLNTFYVTDLKISDTEREKFFREAWKLFYKSVCIEERKNKKLMQSNMPKKYWKYLCEKA N >gi|289656176|gb|ADCS01000014.1| GENE 8 6830 - 7459 449 209 aa, chain + ## HITS:1 COG:no KEGG:Ccel_2796 NR:ns ## KEGG: Ccel_2796 # Name: not_defined # Def: hypothetical protein # Organism: C.cellulolyticum # Pathway: not_defined # 15 196 210 399 403 95 33.0 1e-18 MKNKVKQYEVIDYLYGYILKNYNGARLISEKSLELENFIQNDFESSEKNCSLVASTRVIK YYADRISILPKDESEIFKQIYTLAQKYNYNEKIGIFSTKVDDILRDYFTFFKVNTISRGH YFGNFYKPVKKEIDENRPLVMNIAFGEYHNHTVTVTGYKIFKFKNMKIKFIELYDGWRRE KSYIDYNIFAQGIFSKGICSYYTIKIINN >gi|289656176|gb|ADCS01000014.1| GENE 9 7555 - 8511 1327 318 aa, chain + ## HITS:1 COG:FN0668 KEGG:ns NR:ns ## COG: FN0668 COG0803 # Protein_GI_number: 19704003 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface adhesin # Organism: Fusobacterium nucleatum # 3 318 10 312 312 196 37.0 5e-50 MKKSLLILSLLLVLVGCGKGNNSATTNMPEKNDTKQEQVSDKKVVTVTTSFLYDMVGQLA GDSVERQLIIPAGEDPHLYIAKPQDLGKITNADLVLYHGLHFEGKMQDVLEEKGYAVAST FSEDKIGTMEENGQQIIDPHFWFDIDLYKEATKNASEKLIELLPEEQEKIKKNTEMYLAE LEKLDEENTKELAQLPENGRYLITPHDAFNYFSRKYNIEVVAPQGVSTDSEVANKDIEDT INFIIDHKVKAIFAESTTDPARMEKLKEACAAKGFEVKVVSGEGNELFSDSLAPEGQDGD TYIDMYKHNVKLIVDNLK >gi|289656176|gb|ADCS01000014.1| GENE 10 8556 - 9287 241 243 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|90020817|ref|YP_526644.1| ribosomal protein S16 [Saccharophagus degradans 2-40] # 1 215 5 218 318 97 31 5e-20 NYMEKIIIKVENLTIAYHDKPVLWDNDIDIMENSRTAIIGPNGAGKSTLLKGILGLQKKL SGEVLIMGKPFKDVQKEIAYIPQASSVNWDFPTTVLDVVLMGRYVHLGWIKRPSKKDYEI AYKALETIGMSEFKDRQISQLSGGQRQRVFVARAIAQDAQIYFMDEPLAGVDKVTEKVII EFLKESQKRGKTSIVVHHDLSTIKEYFDHVVILNKRVIAQGLVNDVFNKENLEKAMMIGD RNV >gi|289656176|gb|ADCS01000014.1| GENE 11 9280 - 10161 1048 293 aa, chain + ## HITS:1 COG:BS_ytgC KEGG:ns NR:ns ## COG: BS_ytgC COG1108 # Protein_GI_number: 16080127 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Mn2+/Zn2+ transport systems, permease components # Organism: Bacillus subtilis # 18 291 20 295 435 182 39.0 5e-46 MFSHEILSSYSFIIVSIGTFLLAMASGAIGCITVLKGQSLIGDAIGHSSFPGIILAFMLF MQRDPVILLVGAIFSGAVAFVLIQVIHSNSKLDLDAILAVILSSFFGLGMVFKSYIQGNP KFAGASQSGLQNYIFGQAAYIMKDDIRLILFVAITALLLLIIFYKEIKIFVFDEIYSKTI GLNTTLLYGIILFMTMSLIATGLKLVGAILISSLLIVPAITALQWSNRFNVVLVIASFVG GVSALIGTYISTAYNGMSTGPTIILIMSTFAFISLIIGPHGMIANLRMRRKYK >gi|289656176|gb|ADCS01000014.1| GENE 12 10158 - 11303 1074 381 aa, chain + ## HITS:1 COG:TP0166 KEGG:ns NR:ns ## COG: TP0166 COG1108 # Protein_GI_number: 15639159 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Mn2+/Zn2+ transport systems, permease components # Organism: Treponema pallidum # 13 371 1 358 367 207 38.0 3e-53 MNMLSGLWHYFLISYESLLVLSITSVTCALIGSFLVLRKLSMVSDAISHSVLLGIVIAFF ITKDVSSPLLIVGAALFGVLTVFAIEMLSGTGLVDNDDAVGIVFPLFFALAVILITKFAR NVHLDTDIVLMGEVIMAPINRVVVLGHSMPKALFQMSILFIVNLAFIIIFFKELKITTFD REFAIIAGFSSTILFYVLMTLSSMTAVVAFDAVGAILVVSFLITPGASSYLITKDLKKMI LISCIYALINSILGYLFAMIFNVSMSGMTAAMAGLTFFLTFLFNRDGLITSIILRMKNKQ NFRLDLMIMHIGNHIGEEGENEELGIDSIRNHLMWKQEEIEKHAKKLIEQGIIYIDKKDA EYKLTEKGYTIYDKIKSDYGM >gi|289656176|gb|ADCS01000014.1| GENE 13 11293 - 11712 465 139 aa, chain + ## HITS:1 COG:MA4338 KEGG:ns NR:ns ## COG: MA4338 COG1321 # Protein_GI_number: 20093126 # Func_class: K Transcription # Function: Mn-dependent transcriptional regulator # Organism: Methanosarcina acetivorans str.C2A # 11 133 10 134 224 85 39.0 2e-17 MGCDDLSSTRKDYLQAIYRLSKEKGYTTNKDISEYFSISRPSVSEMIKKLNTLGMLRLDK NKISLSEKGIEEAKKILSKHRIWEYFLTVNLKMDPKKVHEQADILDHITSDELRDALNKY LGYPTLSPNGNDIYENIKE >gi|289656176|gb|ADCS01000014.1| GENE 14 11752 - 12117 301 121 aa, chain - ## HITS:1 COG:no KEGG:EUBREC_0201 NR:ns ## KEGG: EUBREC_0201 # Name: not_defined # Def: hypothetical protein # Organism: E.rectale # Pathway: not_defined # 1 121 1 131 131 124 48.0 8e-28 MFFILGINQKRKILDYNSKLCIHKCGKYERIEVFMIYTVLSLFFMPTIKWNKKYYVKYYC CNEIYELNPQIGKQLEYGNNVEIKECDLIYYGHENAVKKCSNCGYSTDEDFLYCPKCGNK I >gi|289656176|gb|ADCS01000014.1| GENE 15 12252 - 13589 1755 445 aa, chain + ## HITS:1 COG:CAC0460 KEGG:ns NR:ns ## COG: CAC0460 COG1253 # Protein_GI_number: 15893751 # Func_class: R General function prediction only # Function: Hemolysins and related proteins containing CBS domains # Organism: Clostridium acetobutylicum # 8 437 10 439 443 363 50.0 1e-100 MDSAGPTIVPQILLIGFLTFVNSFFASAEMAMVSCNKNKIQTLADEGNSKARTLLKVTKD QTRFLSTIQVGITLAGFFSSASAATTISKDFGELLSTFSIPYSSTAAIVIVTTILSFITL VFGELVPKRIALQNAEVVALRSAGVIGVVSKIAYPFVKLLSLFTTLVLKMIGKYSEDVEE KISEEELKSYIRVSQEQGVINHAGEEMIVKIMDFDDKMAYEIMTPRTSIYMIDYEEFGTC KIDEILEKGFSRVPVYKENADNIIGIVYIKDLFAEYSKNNYKKINIDNCIKEPYFVPETK KVDQLLKELQATKNYVAILIDEYGGFSGMVTVEDIVEEIVGDIADEYDKEDLKIEKISEN LYLIDGAIEIDEINEVLGTELYSENHETLSGLMVELLGFIPEDSEVGLSINYKDEVSLKE ISTKDNRIEKIELKILKREQDNNEN >gi|289656176|gb|ADCS01000014.1| GENE 16 13708 - 13945 165 79 aa, chain + ## HITS:1 COG:lin1623 KEGG:ns NR:ns ## COG: lin1623 COG1961 # Protein_GI_number: 16800691 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Listeria innocua # 5 79 6 80 301 88 56.0 2e-18 MRSYEKITALYERLSRDDELQGESNSIMNQKKILEEYAKKNHLENIVHFTDDGISGTQFD RPGFMAMMNGVNQGNIGCI Prediction of potential genes in microbial genomes Time: Fri May 27 07:25:07 2011 Seq name: gi|289656175|gb|ADCS01000015.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.15, whole genome shotgun sequence Length of sequence - 7087 bp Number of predicted genes - 9, with homology - 7 Number of transcription units - 6, operones - 1 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 616 669 ## FMG_0981 site-specific DNA recombinase + Term 627 - 674 6.4 + Prom 632 - 691 10.2 2 2 Op 1 . + CDS 743 - 1339 433 ## TDE0348 TetR family transcriptional regulator 3 2 Op 2 . + CDS 1359 - 3839 1708 ## COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase 4 2 Op 3 . + CDS 3841 - 5217 1162 ## COG0534 Na+-driven multidrug efflux pump 5 2 Op 4 . + CDS 5183 - 5263 59 ## + Term 5415 - 5459 7.3 6 3 Tu 1 . - CDS 5365 - 5598 99 ## - Prom 5706 - 5765 4.5 + Prom 5308 - 5367 7.7 7 4 Tu 1 . + CDS 5500 - 5757 333 ## FMG_0975 hypothetical protein + Term 5931 - 5980 11.1 + Prom 5866 - 5925 3.9 8 5 Tu 1 . + CDS 6009 - 6383 538 ## FMG_0974 hypothetical protein + Term 6462 - 6496 1.0 + Prom 6426 - 6485 3.7 9 6 Tu 1 . + CDS 6716 - 7085 399 ## COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member Predicted protein(s) >gi|289656175|gb|ADCS01000015.1| GENE 1 2 - 616 669 204 aa, chain + ## HITS:1 COG:no KEGG:FMG_0981 NR:ns ## KEGG: FMG_0981 # Name: not_defined # Def: site-specific DNA recombinase # Organism: F.magna # Pathway: not_defined # 2 200 411 609 617 241 77.0 1e-62 TRLTDSTNRLQELERLMCRIYEDMILEKIPNTRYEILNNQYETEQRELSKEIDGLEKAIK RYEKETNRAKKFIRLIERYDNFDELTPTIINEFVEKILIHERDRKGSQTANQKVEIYFNF IGNYEPPKEELSEEEMQKLREEEEKERVRKDRLHQNYLKRKANGKQKEYEDRYKARREKK KQDKLKVLKRAGIPVCEMQNILIE >gi|289656175|gb|ADCS01000015.1| GENE 2 743 - 1339 433 198 aa, chain + ## HITS:1 COG:no KEGG:TDE0348 NR:ns ## KEGG: TDE0348 # Name: not_defined # Def: TetR family transcriptional regulator # Organism: T.denticola # Pathway: not_defined # 1 197 1 197 198 238 59.0 1e-61 MAKAFTEEEKIKIKEDIMETALDLFHEKGEKSLSISELTKRVGIAQGSFYNFWKDKESLI IDLMAYRSIQKLNDIEKEFSNSLTNPKKFLSDVIYKYAIDIILKIKTQPIYQEAFKIFAS QDSKKVNRVENLYGDFVDRLIDYWYKNNAVKTVDKQGLSNAFVGSFVLCSNYIHFNEDTF EEVLHIYIESIVSRYVEI >gi|289656175|gb|ADCS01000015.1| GENE 3 1359 - 3839 1708 826 aa, chain + ## HITS:1 COG:MTH1118 KEGG:ns NR:ns ## COG: MTH1118 COG0574 # Protein_GI_number: 15679129 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate synthase/pyruvate phosphate dikinase # Organism: Methanothermobacter thermautotrophicus # 5 310 36 347 684 275 48.0 3e-73 MILNFDEIKKEDVLIAGGKGANLGEMTSAKINVPRGFVITADDYRDFLKENSIDIFIENE IKKSGNDEKVLLNVADDFRTKIKSGKFPTLLENAIREKYFNLGDNVRVAVRSSATAEDLP DASFAGQQETYLNVRGLDDVLEQVRSCYASLWGNRAVSYRLHQGYGQSSVSIAVIIQEMV ESEKAGVLFTVNPVSKKENEMQINASYGLGESVVSGRVTADSYIVDKNGEIIEVAIGSKE TQIIYGEKNTVEVKVDDNDRKKRALNDTEISELIKSGLKIEKHYKMPMDIEWAIKDDEVY ILQARAITTLKSSINHISEDNLVQKYTKGKKINRSTREVMSFFLEKMPFAHRALDFDYLA AINDQKVNILLEGGIVLPRNPIIDDDGIQTFSDAGKRINKNIFKFFKILKNMKDFNGCYH KCKDFMKIYESKIEKIKHLNFENMTLEEYKNFMEDSYILLQKLAYDRFKYALFPSVLNDK KFTKIIKKANANYSSFDFYWNLDNKTSAVTNDIYKMACEIRKNESLKRAIISGESYKELY ENYDDFRDITDKFMRDNGFKSDYNCYCLSAKTFIEDPDRLINILRPILNTDENSDEIKQG KDFSKLMIRLKEIYGNKYQDIEKQIEYFRYFHVVREESQYIWETLFYYVRQCVKRINYIL LGSEDYEVGIANLFHKELLEVMNRGSLNESDKEKINRRNEKFPLAIKVWDASKLLIFETN GDVLKGVSGSAGITAGKVCIINSPKEFYKMQKGDILVCHLTDPEWTPLFKLASAVVADTG AALSHAAIVAREFNIPAVLGVGFATTKYKDGDMIQVDGNKGVVRGL >gi|289656175|gb|ADCS01000015.1| GENE 4 3841 - 5217 1162 458 aa, chain + ## HITS:1 COG:lin2873 KEGG:ns NR:ns ## COG: lin2873 COG0534 # Protein_GI_number: 16801933 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Listeria innocua # 11 445 4 438 450 203 32.0 6e-52 MNSSNNKKEFRRKAILNDALLPLLVKTSIPTIIGMLVMVIYNLTDTFFVGILNNKSMTAA IGIVFSFMSFIQAIGFWFGYGSGNIMSKKIGENEEKEAEIISSIGILFAIVIGILIAILS WFFVLPLSKFIGGSASENLLNFTVEYLKVIIISIPFGLYSITLYNQLRLCGNVKDGMIGL LIGMVVNMVLDPVLMFGFKFGFIGAGYATLIGQITGCIVLTNLSEKNGNIAVDLKKARIN KDRVYHILAGGMPNFSRQSITSIALILLNVVAAKYGDGVIAALTISSRILALAYMIMIGW GQGFQPICAMNYGAKQYDRVKKAFKFAVIGGTLFLIIAAILLYVFSEPLIKTMSNDNEVI LVGAEILRMQCITMPLLGYFAISSMLMQNIGQYFWASIISISRQGIFYIPLLYILSNIFG QFGIYLLQPVADVLSFGLAVIVVRKIKFANDKCKKDGI >gi|289656175|gb|ADCS01000015.1| GENE 5 5183 - 5263 59 26 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLMINAKKMAFKVYKRFIQEEKYVAK >gi|289656175|gb|ADCS01000015.1| GENE 6 5365 - 5598 99 77 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLCYLPVGFIYFFTDRYSFSFDINEIFSFIFIHPVFLLFCSLILLFENKKGGLLHFGVKC PLRLKTNTLYDFLLCWF >gi|289656175|gb|ADCS01000015.1| GENE 7 5500 - 5757 333 85 aa, chain + ## HITS:1 COG:no KEGG:FMG_0975 NR:ns ## KEGG: FMG_0975 # Name: not_defined # Def: hypothetical protein # Organism: F.magna # Pathway: not_defined # 6 85 4 83 138 119 81.0 4e-26 MDKDKREYFIYVKGKAVPVSEEVYKAYWKITEHEKYLQRKDWKYDVIPFSAMDYDGHFVD NIIDERVDLEKIVEVKMQIEELNKA >gi|289656175|gb|ADCS01000015.1| GENE 8 6009 - 6383 538 124 aa, chain + ## HITS:1 COG:no KEGG:FMG_0974 NR:ns ## KEGG: FMG_0974 # Name: not_defined # Def: hypothetical protein # Organism: F.magna # Pathway: not_defined # 1 124 1 124 124 94 69.0 9e-19 MKELEKAIDQLKKENDRIEKAQNRAKLLNQKINKLKRNAETKRKVQKGGVFEAFEREITG RQEDTNNDLIYAFLDYVLSDNQNREKLKELTEIHLREKEISLEENQNLEEENVNDDFEEP EDEE >gi|289656175|gb|ADCS01000015.1| GENE 9 6716 - 7085 399 123 aa, chain + ## HITS:1 COG:mll0964 KEGG:ns NR:ns ## COG: mll0964 COG0507 # Protein_GI_number: 13471082 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member # Organism: Mesorhizobium loti # 7 123 5 121 1015 97 45.0 5e-21 MEIKSLHTHVDIVTGAKGASVIAKAAYNARDKLQDEYYGKTHDYSKKTDLVFSKIFLPER VPKEFSNREYLWNEVEKIEKSKNSQLARNLLFELPRELNEQERIKLISEFIEENFTSKGM IAD Prediction of potential genes in microbial genomes Time: Fri May 27 07:25:30 2011 Seq name: gi|289656174|gb|ADCS01000016.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.16, whole genome shotgun sequence Length of sequence - 15724 bp Number of predicted genes - 19, with homology - 17 Number of transcription units - 9, operones - 7 average op.length - 2.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 2 - 1561 864 ## COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member 2 1 Op 2 . + CDS 1642 - 2349 433 ## FMG_0972 putative replisome organizer + Prom 2440 - 2499 6.3 3 2 Op 1 . + CDS 2525 - 2704 217 ## gi|291171200|ref|ZP_06572375.1| conserved hypothetical protein 4 2 Op 2 . + CDS 2759 - 3640 772 ## COG4804 Uncharacterized conserved protein + Term 3673 - 3713 3.4 + Prom 3650 - 3709 2.8 5 3 Op 1 . + CDS 3729 - 3965 92 ## gi|291171201|ref|ZP_06572376.1| conserved hypothetical protein + Prom 3967 - 4026 6.7 6 3 Op 2 . + CDS 4061 - 4177 59 ## + Prom 4229 - 4288 5.0 7 4 Op 1 . + CDS 4485 - 5228 547 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) 8 4 Op 2 . + CDS 5261 - 5770 536 ## gi|299143594|ref|ZP_07036674.1| hypothetical protein HMPREF0629_00446 + Prom 5918 - 5977 7.6 9 5 Tu 1 . + CDS 6224 - 6391 223 ## gi|299143595|ref|ZP_07036675.1| hypothetical protein HMPREF0629_00447 + Term 6417 - 6460 3.1 + Prom 6497 - 6556 16.2 10 6 Op 1 8/0.000 + CDS 6582 - 6959 487 ## COG1725 Predicted transcriptional regulators 11 6 Op 2 . + CDS 6956 - 7801 1031 ## COG1131 ABC-type multidrug transport system, ATPase component 12 6 Op 3 . + CDS 7798 - 8457 596 ## gi|299143598|ref|ZP_07036678.1| conserved hypothetical protein 13 6 Op 4 . + CDS 8435 - 9070 531 ## gi|299143599|ref|ZP_07036679.1| hypothetical protein HMPREF0629_00451 14 6 Op 5 . + CDS 9109 - 9831 449 ## RHA1_ro03607 amino terminal protease + Term 9838 - 9873 3.7 15 7 Tu 1 . - CDS 10251 - 10451 102 ## - Prom 10472 - 10531 4.2 + Prom 10393 - 10452 11.2 16 8 Op 1 . + CDS 10554 - 12083 2055 ## COG1757 Na+/H+ antiporter 17 8 Op 2 . + CDS 12108 - 12602 592 ## gi|299143603|ref|ZP_07036683.1| conserved hypothetical protein + Term 12634 - 12679 4.4 + Prom 12714 - 12773 11.2 18 9 Op 1 . + CDS 12818 - 13732 1166 ## COG2214 DnaJ-class molecular chaperone 19 9 Op 2 . + CDS 13745 - 15724 1310 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 Predicted protein(s) >gi|289656174|gb|ADCS01000016.1| GENE 1 2 - 1561 864 519 aa, chain + ## HITS:1 COG:mll0964 KEGG:ns NR:ns ## COG: mll0964 COG0507 # Protein_GI_number: 13471082 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member # Organism: Mesorhizobium loti # 5 233 30 235 1015 141 35.0 3e-33 NARDKLQDEYYGKTHDYSKKTDLVFSKIFLPERVPKEFSNREYLWNEVEKIEKSKNSQLA RNLLFELPRELNEQERIKLISEFIEENFTSKGMIADCNIHNPMASDHEEQSHAHILLTLR EMDSEGKWKPKCRKEYILDENGEKIKLKSGNYKSRKVNLNDWNEPDKAKEWRENFSKKAN GYLERNNIQKIIDPRTFEEQGREELPQIHLGTSSYQMEKKGIQTERGNQNRKIIALNLEF KKLKAELSKLTSWIGSLLGSLQVKYDEYKQEKKEEYENKAELFNLYEYISIYYDIQGEKA RKLNPYASNKKIGADLRRFSKARIYLSDNKLQTIADLQEKISTLQAKNKKISQDIKAKTA RIESLNKCFTYADIIKDNKQVFEEWNSKSLFKDSFYNSHKDEIDKYKRARAILEKITGSS AIKSKDWKKEIQSLESEISKLNRQSQKIKEEYESINHIKYAVKTVNEDYGIDLSIEIDKA IKRGEKPSVIAQIKKYQEQQEAYEKRKEKTKNYYRNEER >gi|289656174|gb|ADCS01000016.1| GENE 2 1642 - 2349 433 235 aa, chain + ## HITS:1 COG:no KEGG:FMG_0972 NR:ns ## KEGG: FMG_0972 # Name: not_defined # Def: putative replisome organizer # Organism: F.magna # Pathway: not_defined # 1 235 1 237 237 401 89.0 1e-110 MADKRMFSLKIVDSDLFLDMPLSSQCLYFHLSMRADDDGFVNNPKKIIKIIGANEDDLKI LIAKGFVIVFEQGIIVITHWKINNFIRKDRYKPTLYENEVQSLSQTKTGMYIKEIGCHLV AERLTSGQPSIDKGRLDKVSIDKGRVEQDTPFSFYGEYKNIRLTDEEYRKLKDKLQGHTD MMIEKLSRYIKSTGKTYQDHYVTILNWYEQDKDKLSQKKTRKIPTLEDYDKGEHL >gi|289656174|gb|ADCS01000016.1| GENE 3 2525 - 2704 217 59 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|291171200|ref|ZP_06572375.1| ## NR: gi|291171200|ref|ZP_06572375.1| conserved hypothetical protein [Filifactor alocis ATCC 35896] # 1 59 1 59 371 83 91.0 5e-15 MDNKELSITSDSEYKRLLSELKEKVRSSQLKAAIKVNYELLDLYWTLGEYIVKNQEQHS >gi|289656174|gb|ADCS01000016.1| GENE 4 2759 - 3640 772 293 aa, chain + ## HITS:1 COG:MA2994 KEGG:ns NR:ns ## COG: MA2994 COG4804 # Protein_GI_number: 20091812 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Methanosarcina acetivorans str.C2A # 2 289 77 341 345 139 31.0 7e-33 MKGFSETNIKYIRRWYSFYIKGLQGVAEIENNDRNSKGLQPVAQFDERVINHIKQIPWGH NQRIINKCKTIDEAIYYVDKTIENGWSRNVLVHQIESGLYGREGKSITNFEKRLPALQSD LARQTLKDPYHFDFLTIREGYDERELQKELVDKISDFLLELGEGFAYIGKEYHLNINGDD FYIDLLFYNLKLHSYIVIELKAEKFKPEHLGQLNFYVTAVNRELKTDRDNATIGLLICKD KNDVVCEYSLEQISQPIGISKYEITKLLEAEYKSSLPSIEEIEKKIKEIDTDN >gi|289656174|gb|ADCS01000016.1| GENE 5 3729 - 3965 92 78 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|291171201|ref|ZP_06572376.1| ## NR: gi|291171201|ref|ZP_06572376.1| conserved hypothetical protein [Filifactor alocis ATCC 35896] # 1 57 1 57 61 67 100.0 4e-10 MQEKRNEQTTGTKTIKKIGKTTYEVIVHFNDKSSETMQDKLKRIMLREFRRKSDEKKMIL IKKSLTSSNRGNVLKKNT >gi|289656174|gb|ADCS01000016.1| GENE 6 4061 - 4177 59 38 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFDLDTQDRIGKDRLDKGIREESPSKTQKPMKNFKMSI >gi|289656174|gb|ADCS01000016.1| GENE 7 4485 - 5228 547 247 aa, chain + ## HITS:1 COG:CAC2472 KEGG:ns NR:ns ## COG: CAC2472 COG0596 # Protein_GI_number: 15895737 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Clostridium acetobutylicum # 1 244 1 246 250 72 25.0 1e-12 MNYIKYGNKKNKSLLFIHGLASTAQLCFDPLLPYLQDYYIVLCELDGHCASKPNDMLSLK DSIDDIENYIQEEMNGNVYGLCGFSMGATIAVELIARENIAVERVLLDAAVIIEMGLMAL PFQWAFIIGTSRIKHRKPIPQFLLNKMMGKDNHSVIEMMYTHISKKTIQNACKYIYHYKI SENLRKFSNPVLFWRGSEESIPAKGEKKLKEYLPQMASEVFESMGHGQFLHEHPKEYAEK LKIFLQE >gi|289656174|gb|ADCS01000016.1| GENE 8 5261 - 5770 536 169 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299143594|ref|ZP_07036674.1| ## NR: gi|299143594|ref|ZP_07036674.1| hypothetical protein HMPREF0629_00446 [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 169 1 169 169 303 100.0 2e-81 MINTLIMLGLVCLLATLMIMDFIIVIPKFGSKHFGAPDDIKKMMEKIPDRASWVNILGVC IMIAGFVGVASVFIWAMVDTVKTDMSFSGAFIRFFVITEGYKLFDIICFDYLMLTKLKLP AKIYPETAGAKGYDNFGFNAKSQINKLVVFCGASILLAFILTVIIPLWR >gi|289656174|gb|ADCS01000016.1| GENE 9 6224 - 6391 223 55 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299143595|ref|ZP_07036675.1| ## NR: gi|299143595|ref|ZP_07036675.1| hypothetical protein HMPREF0629_00447 [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 55 1 55 55 75 100.0 7e-13 MEEKSKKNLTKWFKDKVKNVYDNESKNHEYNGISCCHFGAIDYFTDDDKKIKTEK >gi|289656174|gb|ADCS01000016.1| GENE 10 6582 - 6959 487 125 aa, chain + ## HITS:1 COG:SA1748 KEGG:ns NR:ns ## COG: SA1748 COG1725 # Protein_GI_number: 15927508 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Staphylococcus aureus N315 # 1 125 1 125 126 101 43.0 3e-22 MNIIISNSSEQPIYEQIKIQIKNMIMTGELKAGDLLPGMRSLAKELKISVITTKRAYNDL ETEGYICTVAGRGCFVKSLNSDLIREENLKRIEEYLNKALEVANASGINSGELIEMLSFL IRGET >gi|289656174|gb|ADCS01000016.1| GENE 11 6956 - 7801 1031 281 aa, chain + ## HITS:1 COG:CAP0090 KEGG:ns NR:ns ## COG: CAP0090 COG1131 # Protein_GI_number: 15004794 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Clostridium acetobutylicum # 1 228 3 234 282 182 45.0 4e-46 MKAVEIKNLSKSYGDFSLKDVNFDVEKGSIMGLIGANGAGKTTIIKAILSMIKYGGDIKI FGKKLDDDIRQDIGFVLEDCFISNFLSAKEADKVFKNMYKNWDSDYYNNLLNKFELPLNK SNSKFSKGMRMKFKIAVALSSHPKLLILDEPTSGLDPVIRDEILDIFLGYIEDENNSILI SSHITSDLEKIADYITYIDKGEIVFSKEKYDLFEDMGILKCSNERFKEIDKSYIQKYKIG KYSVEALIKNKDMFKKEYSNEIVDSAELDEIMVFYAKGEDI >gi|289656174|gb|ADCS01000016.1| GENE 12 7798 - 8457 596 219 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299143598|ref|ZP_07036678.1| ## NR: gi|299143598|ref|ZP_07036678.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 219 1 219 219 321 100.0 2e-86 MKAIILNDFYNWRRSIKTSIFALVCCMISPIISALRGQLNFGYVIMTIGIASFIFGSIEV SSVFYDEQSGFLDLIYATPISEERYITSKFVFSVLIHLIIFLVASIVMLAISNDIELIKI NFLIISIYMICCFVNIAFMFKFGCKNIFTLMMVVFMILFFTAYFFGFDNIFEFMKKDVKN TYYLVSGLVLLIDVVLFFVFKKLGIKYLKERKNDKSSFV >gi|289656174|gb|ADCS01000016.1| GENE 13 8435 - 9070 531 211 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299143599|ref|ZP_07036679.1| ## NR: gi|299143599|ref|ZP_07036679.1| hypothetical protein HMPREF0629_00451 [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 211 1 211 211 266 100.0 6e-70 MIKALLYKDFINILDSMEKKYYFLIFFVIDILIFYFAEAPIAAIFSGIFAFTIFASTFSM DEQAVCTNYVVATPTSKKHIAEYKFLLFFILEGIIMAINVVVFYVFKIFGVIENIGVVEM VIAPQMGMFIFYILIIPATFKYGIVKAPMVIVGILILSYLILYAINGIDKIKILLSNFKE SILILIVIAFMCVIGIISYLTTLIILNNKDY >gi|289656174|gb|ADCS01000016.1| GENE 14 9109 - 9831 449 240 aa, chain + ## HITS:1 COG:no KEGG:RHA1_ro03607 NR:ns ## KEGG: RHA1_ro03607 # Name: not_defined # Def: amino terminal protease # Organism: Rhodococcus_RHA1 # Pathway: not_defined # 13 228 26 256 269 80 29.0 4e-14 MENYDYTVHEENIKVEDLMDFPFGDVSNLRWLISLAILFGGFILSLGRVIKSVPILVTVL IVSSIGSLIVLDLHFFRKLFKRIRAKDLLIMLFTLVLTFIFAVLSANFLKQSNLVENPIS EFLSNDNIKILFAVSLVQLLIEEIVFVLPFLFIYHNTKKINRYFAIALAWIISSEIFGAL HLSTYSYNFLQCLVIISSVRFGLTTAYVWRKNLALTYIVHVVYDWILLFIVLYAKNSGLM >gi|289656174|gb|ADCS01000016.1| GENE 15 10251 - 10451 102 66 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGIIPKVKLINISKQISYFTYVILLSSMFINRKSDMNMFSKSIISLFKSIIFFLSLIKVN TVKNFT >gi|289656174|gb|ADCS01000016.1| GENE 16 10554 - 12083 2055 509 aa, chain + ## HITS:1 COG:FN1422 KEGG:ns NR:ns ## COG: FN1422 COG1757 # Protein_GI_number: 19704754 # Func_class: C Energy production and conversion # Function: Na+/H+ antiporter # Organism: Fusobacterium nucleatum # 18 463 1 443 473 363 44.0 1e-100 MTNGKKRSVRLPSFFEAIIPIIVMVGLMIYVFATDSGYDAAHMPLIVAISVACIIGALCG HDFPDMVSGMIERLSASLEAILILCTVGLLVSSFMISGTIPALIYYGLDLLTPKLFLPVG CILCAVVGLACGSSWTATATIGIAFLTIGAGLGINPALTAGMVISGAYVGDKFSPLSDTT NLAAAVSNTGLFDHVTAMVSTTGPVFLISLVIYSILGMNIDPSNYDPTIASGIQEALAEN FNLTPLLLLPILVVIVVCILRVPGLPGVMISVATGVLFAYIFQGGGTIGSMFDVLHYGPG IETGNAFVDKALAKGGMDHQMWTINLILLAVSYGGALERCGSVERLFGGVKEKIHGVGSL ILVTLATSVFCDAAMCDQFLGIGVPAPLYVDKYDELGLSRNMLSRTLEDAGTLWSPMFPW TACGAYQMGVLGMSPFVYFPYAFVNLLNPIYAAITAMLGRNIFWADGAYTNLFGKTTMKK VAAAPAEAHEKAVKNLEALRAAGKAPKVA >gi|289656174|gb|ADCS01000016.1| GENE 17 12108 - 12602 592 164 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299143603|ref|ZP_07036683.1| ## NR: gi|299143603|ref|ZP_07036683.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 152 7 158 170 282 99.0 6e-75 MKLDKLPWASIDSPIYTNREIKPRKDWVIAGGWIMTAILIISGFTTKYKISLVFGVLYAL ALLMIKYVAVTNRGLEIFYDMKIMKHYELWEWKDIFALTHEKNIDYPEIIAIYFSKGDRS KRLFFDKRDKNAIIQMAKSLNPEIKIYDAEDEKRKHAAAKSKKK >gi|289656174|gb|ADCS01000016.1| GENE 18 12818 - 13732 1166 304 aa, chain + ## HITS:1 COG:all1488 KEGG:ns NR:ns ## COG: all1488 COG2214 # Protein_GI_number: 17228981 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: DnaJ-class molecular chaperone # Organism: Nostoc sp. PCC 7120 # 3 299 8 298 315 181 38.0 1e-45 MKYRDYYEILGVDKNASAKEIKSSYRKLAKKYHPDLNNGDEKAQEKFKEINEAYEVLSDP EKKKKYDTFGSSYDFTNGANFDPSQYGYTYTTSGGSGDFSDFFEMFFGSSNGGKSQGGFN ISDLFDMGGRRSKRKKSTVRQKFDTELNISLKEAYTGVTKHVALSLNGKNIEMDVKIPSG ITPGKKIKVAGEKYGVPGDILFKIEVYTMTNEILDGLNITKEQDIYPWQAALGDKVVVET LSGKIKIGVPKNFKGGTKMRIPGKGFKDLKGSSGDLYVKFNIVNPNELTEEQIKLYEKLS KTLE >gi|289656174|gb|ADCS01000016.1| GENE 19 13745 - 15724 1310 660 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 1 660 1 607 815 509 43 1e-144 MNLEKFTQKSIEAVQAAQSIAIQNGNPQIEDIHLNAALLQDKDGLIPRVLKYMGISSDIV LNDIQNIISRLPKQSGGNNYPSREFGKILEDAEKIAAQFGDDYVSVEHIYLAILSMKNNK SSEIFSKYHLNRESFLEALKKIRGNQHVRTDNPEDTYDALEKYGRDLTKEAKTGKMDPVI GRDEEIRNVIRILSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPEGLKNKIIFSLD MGALVAGAKYRGEFEERLKAVLSEVEKSSGEILMFIDEIHNIVGAGKTEGAMDASNLLKP MLARGELHAIGATTLDEYRKYIEKDPALERRFQKVMVSEPTVEDTISILRGLKEKYEIYH GIRISDSAVIAAATLSNRYISDRFLPDKAIDLMDESCAMLRTEIDSMPTEIDDVRRHILQ LEIEREALKKETDDASKRRLKDLEAELSEEKASFDKLKAQWESEKKEIDRVKEIKTKIDD TKHLIEEAERNYNLEKLSVLKYGELPKLEEELKLEEEKAKNEDRMVKEEVNEDEIAQVVS RWTGIPVEKLNQSQRDKLLNLSDILHERVIGQDEAVEAVSNAVLRARAGLKSENRPIGSF IFLGPTGVGKTETAKALTESLFDDERNMIRIDMSEYMEKHSVSRLVGSPPGYVGYDEGGQ Prediction of potential genes in microbial genomes Time: Fri May 27 07:26:42 2011 Seq name: gi|289656173|gb|ADCS01000017.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.17, whole genome shotgun sequence Length of sequence - 39147 bp Number of predicted genes - 30, with homology - 30 Number of transcription units - 13, operones - 6 average op.length - 3.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 863 806 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 + Term 866 - 919 12.0 + Prom 902 - 961 12.6 2 2 Tu 1 . + CDS 1019 - 4279 3134 ## Apre_0477 sortase B cell surface sorting signal + Term 4303 - 4354 16.1 + Prom 4352 - 4411 10.2 3 3 Op 1 2/0.000 + CDS 4477 - 5619 1451 ## COG1960 Acyl-CoA dehydrogenases 4 3 Op 2 29/0.000 + CDS 5634 - 6428 994 ## COG2086 Electron transfer flavoprotein, beta subunit 5 3 Op 3 . + CDS 6447 - 7457 1410 ## COG2025 Electron transfer flavoprotein, alpha subunit + Term 7458 - 7514 6.0 + Prom 7484 - 7543 10.2 6 4 Op 1 1/0.000 + CDS 7636 - 8523 1128 ## COG0812 UDP-N-acetylmuramate dehydrogenase 7 4 Op 2 12/0.000 + CDS 8523 - 9368 990 ## COG1660 Predicted P-loop-containing kinase 8 4 Op 3 . + CDS 9365 - 10330 931 ## COG0391 Uncharacterized conserved protein 9 4 Op 4 . + CDS 10379 - 11401 1264 ## COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases + Term 11409 - 11443 6.2 + Prom 11430 - 11489 15.2 10 5 Tu 1 . + CDS 11569 - 14229 2473 ## COG4870 Cysteine protease + Term 14235 - 14263 3.0 - Term 14214 - 14260 5.1 11 6 Tu 1 . - CDS 14284 - 14658 396 ## gi|299143616|ref|ZP_07036696.1| conserved hypothetical protein - Prom 14744 - 14803 10.3 - Term 15000 - 15045 9.2 12 7 Op 1 . - CDS 15054 - 15359 309 ## COG3760 Uncharacterized conserved protein 13 7 Op 2 . - CDS 15365 - 15541 264 ## SGO_0838 YbaK/prolyl-tRNA synthetase associated domain-containing protein - Prom 15596 - 15655 12.1 - Term 15568 - 15635 0.6 14 8 Op 1 . - CDS 15755 - 17467 1537 ## FMG_1176 hypothetical protein 15 8 Op 2 . - CDS 17464 - 18372 984 ## COG0714 MoxR-like ATPases 16 8 Op 3 . - CDS 18385 - 19146 1031 ## COG0730 Predicted permeases - Prom 19203 - 19262 13.1 + Prom 19210 - 19269 10.2 17 9 Op 1 . + CDS 19294 - 19485 221 ## gi|299143620|ref|ZP_07036700.1| hypothetical protein HMPREF0629_00473 + Term 19488 - 19520 2.5 18 9 Op 2 2/0.000 + CDS 19531 - 20229 1015 ## COG0152 Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase 19 9 Op 3 13/0.000 + CDS 20231 - 21580 1511 ## COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase 20 9 Op 4 21/0.000 + CDS 21591 - 22619 743 ## PROTEIN SUPPORTED gi|169632702|ref|YP_001706438.1| phosphoribosylaminoimidazole synthetase 21 9 Op 5 10/0.000 + CDS 22616 - 23167 550 ## COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN 22 9 Op 6 . + CDS 23164 - 24669 1833 ## COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) 23 9 Op 7 . + CDS 24678 - 29585 5691 ## COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain 24 9 Op 8 . + CDS 29582 - 31009 1349 ## COG0015 Adenylosuccinate lyase + Prom 31076 - 31135 7.1 25 10 Tu 1 . + CDS 31173 - 31835 718 ## Dtox_0436 S-layer domain protein + Term 31836 - 31881 3.1 + Prom 31840 - 31899 6.8 26 11 Op 1 . + CDS 31927 - 32991 1133 ## gi|299143629|ref|ZP_07036709.1| hypothetical protein HMPREF0629_00482 27 11 Op 2 2/0.000 + CDS 32993 - 33829 769 ## COG0668 Small-conductance mechanosensitive channel 28 11 Op 3 . + CDS 33823 - 34056 321 ## COG4481 Uncharacterized protein conserved in bacteria + Term 34076 - 34139 2.4 + Prom 34284 - 34343 7.9 29 12 Tu 1 . + CDS 34397 - 35305 843 ## STH2580 hypothetical protein + Term 35307 - 35361 7.2 + Prom 35311 - 35370 8.8 30 13 Tu 1 . + CDS 35525 - 39146 3657 ## PG0182 von Willebrand factor type A domain-containing protein Predicted protein(s) >gi|289656173|gb|ADCS01000017.1| GENE 1 3 - 863 806 286 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 1 280 521 806 815 315 55 4e-85 EAVEAVSNAVLRARAGLKSENRPIGSFIFLGPTGVGKTETAKALTESLFDDERNMIRIDM SEYMEKHSVSRLVGSPPGYVGYDEGGQLTEAVRRKPYSVILFDEIEKAHPDVFNILLQVL DDGRLTDNQGRTVDFKNTVIIMTSNIGSSYLLEGIDDKGQIREEARQLVENEMKIKFRPE FLNRIDEIVMFKPLDREQIYKIIKVNILDIENRLKERNIKIKITEQALNLILNKAYNVVY GARPVKRFIQSNIETEISKMIIKGEISENKTVFIDVKNDELYLLAE >gi|289656173|gb|ADCS01000017.1| GENE 2 1019 - 4279 3134 1086 aa, chain + ## HITS:1 COG:no KEGG:Apre_0477 NR:ns ## KEGG: Apre_0477 # Name: not_defined # Def: sortase B cell surface sorting signal # Organism: A.prevotii # Pathway: not_defined # 633 850 86 298 409 97 32.0 3e-18 MKHFSKKICVGLSLFMFISYFGPVSNVFAEEIENNSDNFTENAEDKLFENRELNSAYADE KKIDESYETYENVDFSIWKVDDFEYEGTTLTGLSDSGRLKIRKNKNLILPNANPDGQSIT KIGYMAFGAKKAKYGKGIKSVTFPNTIEIIDEDAFSFNDIKEIKIPASVRIIGKYSFYDC ELSKIIFEENSILESIEKKAFKHNRLSDINIPNTLKEIGEEAFEDNPGSSGGKVILYPMD ITKPVLVSSNENYIVKSGNSSEPIPNDTEWYRGSAECVRTDEGKVKRSYIVKVRISVKDG KISIVEDDGTEFIGKAYKNEKYYKGALPIFDRYRDKSIEQILNFELTNPRYGEAQNELGI DVVSGSTVSSKTIHNAIRNAIGKVPAPSVPQDDINSVRETAINEINESVEQLKSIVEELK NLVGDSKSKIQNEIGYTKDSVDNLKIELKKAENHINLCDCDKIKSDTKNEIDALKTIELI NEKKKQILSEISSLKSEIEKNKIDLENAVSNLQQNFENDDLYEGEAKCPRFKYLIKLKVR VRDGKVTLVEDNGTNVKGQNLKRYNRSKSLFKLYKDKNKDQILNFELTKKSEPKNELGID VVSGATYSSRGIHEAMRDAVGKIVEINPEIILAKEILRGYVDSIKESVLKEEGIGTDNNK VAIEAFNEHIELARNLLAKENKDITPEELDKMQKMPTFINSEGKKQKGSFAKLAKEIKAD FEVLGERSYQNKDNEKFYTVVKNGEIIIKTAVRDLEQSGNRKLYLNYITETQYNSKGKSD AVSGATPKYEKQEVPLENYTLKNNNNGTYTIKIDKIPSDAVILKPIIKVELANMTSIENG DMVYIKSNDPMPEPLKEYRVNVIGGTGSGQYKKGDKVEISAIDHRFSCWDSNVKLDNKYN SSTFFIMPEYDVSIYAILNERDTKEYKDKTERTNYKNDATIINNVQNKNITSILKIGSKE MTINNNGTIKTITMDVAPYIKNDRTMLSLRYVAEALGYTVTWNKDTRTASFTDGKNICLI QIDGNEMVVNGEKFILDNKPEIVSGRIMLPIASIARALGLSEGIEAIDTNKNIMWNGEER KITISI >gi|289656173|gb|ADCS01000017.1| GENE 3 4477 - 5619 1451 380 aa, chain + ## HITS:1 COG:FN0783 KEGG:ns NR:ns ## COG: FN0783 COG1960 # Protein_GI_number: 19704118 # Func_class: I Lipid transport and metabolism # Function: Acyl-CoA dehydrogenases # Organism: Fusobacterium nucleatum # 1 374 1 376 381 500 68.0 1e-141 MDFRMDKEHLLLQQMYRAFAENEVKPVAQETDATENVPMENVKKLARYGFFGIPFPKEYG GQGADYLAYAMAVEELSKKCATTGVIVSAHTSLCAAPIYENGTEEQKKKYLPDLLSGRKI GAFGLTEPGAGTDAAGQQTTAVLDGDEYILNGTKIFITNAGFADTFIIIAMTDKSKGTRG ISAFIVERGTPGFRVGEPEDKMGIRGSSTCELIFENCRIPKENLLGREGKGFGIAMKTLD GGRIGIASQALGIAEGAIDETVVYVKERKQFGKRLSQFQNTQFQLADMKAKTDAAQLLVY RAADMKYNGEAYSHAAAMAKLFAAETASDVTRRCLQLFGGYGYTRDYPIERMMRDAKITE IYEGTSEVMRMVISNWMGVK >gi|289656173|gb|ADCS01000017.1| GENE 4 5634 - 6428 994 264 aa, chain + ## HITS:1 COG:CAC2710 KEGG:ns NR:ns ## COG: CAC2710 COG2086 # Protein_GI_number: 15895967 # Func_class: C Energy production and conversion # Function: Electron transfer flavoprotein, beta subunit # Organism: Clostridium acetobutylicum # 1 264 1 259 259 296 60.0 3e-80 MKIVVCIKQVPDTNEVRLDPVTNTLIRDGVPSIINPDDKSGLEAALQIKDMDPENTTVTV LSMGPPQAEAALREALAMGADEAILVTDRAFGGADTWATSCTIAGALEHLEYDLIITGRQ AIDGDTAQVGPQTAEHLGLPQVTYAEDIKIDGDKVIVKRQYEDRYHIIEVKMPCVITAIA ELGAPRYMTIGRIFDAYKKEITVWGLEDIKDKLDLANIGLKGSPTKVKKSFPKQGKGEGV LLTNLTADEAAQAIVAKLQEKYII >gi|289656173|gb|ADCS01000017.1| GENE 5 6447 - 7457 1410 336 aa, chain + ## HITS:1 COG:FN0785 KEGG:ns NR:ns ## COG: FN0785 COG2025 # Protein_GI_number: 19704120 # Func_class: C Energy production and conversion # Function: Electron transfer flavoprotein, alpha subunit # Organism: Fusobacterium nucleatum # 3 332 7 391 391 331 51.0 1e-90 MSKDVFVFIEQRDNTLQKVGIELLGKARELADALDQKVVAMLLGEKIKDEANILIKHGAD KVIYVEDPMLKEYVTEPYAKAIFEIIKENDPEIVIYGATSIGRDLAPRLAARIHTGLTAD CTKLEIDPESKNLMMTRPAFGGNLMATILCENHRPQMATVRPGVMQSLSSDASRTGEVVE KKIEFVPEDMNVTVKEIIKSKSKKKDITEANILVSGGRGLGGPEGFKMLESLANTLEAEV SSSRAAVDAGWITKDRQVGQTGKTVRPELYFALGISGAIQHLAGMEESDIIIAVNKTEDA PIFDVATLGVVGDINAIVPKLTEAIEREKAIKAEIN >gi|289656173|gb|ADCS01000017.1| GENE 6 7636 - 8523 1128 295 aa, chain + ## HITS:1 COG:CAC0510 KEGG:ns NR:ns ## COG: CAC0510 COG0812 # Protein_GI_number: 15893801 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate dehydrogenase # Organism: Clostridium acetobutylicum # 1 293 11 302 305 253 47.0 4e-67 MKEFEKYGKVLLNEPLKKYTSFRIGGNAKAVLLPVDENALIDSIKLCKEKNMNYIVLGNC TNILVDDEGFDGLAIILKGVLDDIRVDRNILTAKSGATLRQVATIAMENSLGGLEFAHGI PGSVGGGAIMNAGAYDGELKDVVESVRLLDDELNIIELSNEEMQFSYRNSIAQDRGYIIL SVKFKLFEKNIEEIKEKMNDFYNRRREKQPLEYPSAGSTFRRPTGYFAGRLIDDSGLRGL KHGGAQVSQKHCGFVINADNATAKDVRELIEIVQKTVYDKFNVELKREVKYIGGK >gi|289656173|gb|ADCS01000017.1| GENE 7 8523 - 9368 990 281 aa, chain + ## HITS:1 COG:CAC0511 KEGG:ns NR:ns ## COG: CAC0511 COG1660 # Protein_GI_number: 15893802 # Func_class: R General function prediction only # Function: Predicted P-loop-containing kinase # Organism: Clostridium acetobutylicum # 1 278 1 283 294 287 52.0 2e-77 MEILVITGMSGAGKSQALNILEDLGYFAMDNLPPALIPKFAEIASVSNYVNKVCVVVDVR SGKFFQDFSSSLNQLKGLNIDYKVMFLDSSEEVIINRYKELRRRHPLNESIVKGYSLERE LLKDIKSNADYIIDTSNLSTATLKKNIRDILKIDFQEELKISIASFGFKNGILLDGDLIF DVRFLPNPYYIPELKELNGNNESTKNYVMSHEVTREFIDKCVDMLRFLIPNYLKEGKSVL SIGFGCTGGFHRSVVIANEIGRRLKSLGNNVTINHRDVGKI >gi|289656173|gb|ADCS01000017.1| GENE 8 9365 - 10330 931 321 aa, chain + ## HITS:1 COG:CAC0512 KEGG:ns NR:ns ## COG: CAC0512 COG0391 # Protein_GI_number: 15893803 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Clostridium acetobutylicum # 4 315 105 412 451 280 46.0 4e-75 MKNVVVVGGGTGISALLRGIKKYTENLTAIVTMADDGGGSGRLRSELGILPPGDVRNCLS ALANTEPVMEKLLQFRFDSGTLKGQNFGNILIAALCEIYGSFDTALMQIENVLSITGKVI PVTLENIHLVAEFYNGDKCIGESMIPSMSYKLDTGIKNMSMFPKIPQANPKATDAILDAD VIIFGPGSLYTSIIPNLLVEDIVDSIKKSDAQKIYVSNIMTQKGETLGYTLADHIKAFEK YSYENILDACVVNNMQISEKLLKYYLIRDRAKEIKMLEEDKKFLNSKNIDIILGDFVEEN SKYIRHSGIKIAEALKNSSIL >gi|289656173|gb|ADCS01000017.1| GENE 9 10379 - 11401 1264 340 aa, chain + ## HITS:1 COG:lin1420 KEGG:ns NR:ns ## COG: lin1420 COG1304 # Protein_GI_number: 16800488 # Func_class: C Energy production and conversion # Function: L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases # Organism: Listeria innocua # 1 332 8 340 358 233 38.0 3e-61 MRKYRKREHVENYLRSTYVGNPLFEDVFLYHNSLPECDFNEIDTSTVFLNKKVDFPLIIN AMTGGSEFAEGINLSLARVAKEFNIPMAVGSQTIVFEDKDARKSFECVRETLGDGIVLSN LSGHATVDEAKYAIDMIKADGIQIHLNPAQELAMEEGDRGFKGIIKNISKIVEGVDVPVI VKEVGFGISKDVAVKLYDAGVRYIDVSGFGGTNFFEVENLRVPSNDLSELYGWGIPTAMS LIEVNSLGYKDLNMISSGGIKNSLELVKSIVLGASMTAISGEILTYLIHGGYEYTMQYIS NIIYKSKVTMLLTGAKNISELSRVNYRVTGKLRELVDYDK >gi|289656173|gb|ADCS01000017.1| GENE 10 11569 - 14229 2473 886 aa, chain + ## HITS:1 COG:MA3430_1 KEGG:ns NR:ns ## COG: MA3430_1 COG4870 # Protein_GI_number: 20092242 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Cysteine protease # Organism: Methanosarcina acetivorans str.C2A # 62 437 79 448 516 121 28.0 7e-27 MNSKLHKIIAILLMSIIILGDVSPVIALEEAWTYKMETSEAEIIKNPNYDYYLNHRDEFK YGYVPPKTLFPVAEPVSGRRSKRDIPVPEKYDARDAELISPVKNQNSTGTCWAHASMSSV ETALKKSGYGDFCDFSELHLVHNTNKSTNLQDGGNIPFAMSYFSRLNGPKFEKDFPSTDS VSDDEVKVLPGHTIMEDFSKKLAEKQVGDMIVINKSEIKKFVMEYGAVIGSYHHDESGFI KDSNGIVDKTRYHLKKSESNHAVTIIGWDDNKKITDEVVGAYLIKNSWGTNFGDNGYFWV SYETFPENVDGKQSNYYVLTDVRDKVADNVYQYDEYGVAGFDGFKTLKTFIFANEFDKQS AKDEIITDIAFYNCNAKNTEFTVYIVERDDWKSKKPSNLSEEDKVATGNITHSGYYTVTL ENPRYITKNKFVIIMKLETDTEGVYAGLAATDTGEDKKPKNKKSYYWTGMSFNEAIGCMS LNAYSKIVSEEEYTITINSSENGSVKANKYKAKKGEEITLTIEPKEDYELDKIEVKKDDE EIILTSDNKFIMPEGNTIITAKFKEKPAEEYTVTITNDGNGNASADIQKGKTGTEVTLSA TANPGYKFKEWQVINGDVTVSNNKFNIGNKDVEIKAVFEKISPNSETVKIIFDSNGGSFV PTQSIEKNTKAIRPTDPIRFGYTFMGWYRKFNQEELFNFNEKINEDTILIAKWEKNYNIT PDPYYSKSNTWKTINATQITKTEEKKTEIKQIELKTTIKIGSKTLEKSINGKSVSIQMDV APYIENGRTMLPVRFVAETLGFEVEWNNNTRTVILKNKDNTVELPVGTNKIIVNSVEYTS DVKTVIKDDRTFLPVANIARVLGMKDGKDVVWDELTKEVTIIKKLK >gi|289656173|gb|ADCS01000017.1| GENE 11 14284 - 14658 396 124 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|299143616|ref|ZP_07036696.1| ## NR: gi|299143616|ref|ZP_07036696.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 124 1 124 124 228 100.0 7e-59 MKNRILLAVTSILVISFSMAVYANNKPKVPEGFKEVISYEELKPNLLSEKSSQPREYKNK VISEYEYTIYQNNGNFSRIIEDCPHTQNEKLYIGNLTLQYTYQIDSDNFAGVYKGDLHYV GPAE >gi|289656173|gb|ADCS01000017.1| GENE 12 15054 - 15359 309 101 aa, chain - ## HITS:1 COG:L89201 KEGG:ns NR:ns ## COG: L89201 COG3760 # Protein_GI_number: 15674012 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 1 101 62 163 163 77 42.0 8e-15 MDDMKRVDMKILEELIETKGLHFCSEEKLMEKLMLPPGVVSIFGLLNNFEKDVNIILDEE IMNEKYMSFHVNDNTKTAFITTEDMCRFINECGFEYKIIKL >gi|289656173|gb|ADCS01000017.1| GENE 13 15365 - 15541 264 58 aa, chain - ## HITS:1 COG:no KEGG:SGO_0838 NR:ns ## KEGG: SGO_0838 # Name: not_defined # Def: YbaK/prolyl-tRNA synthetase associated domain-containing protein # Organism: S.gordonii # Pathway: not_defined # 1 53 1 53 162 72 64.0 5e-12 MKEYEKVLQKLEELNINYKLIDHPPALTTEQADKYIEGIEGVRTKTLFLANKKIVHIT >gi|289656173|gb|ADCS01000017.1| GENE 14 15755 - 17467 1537 570 aa, chain - ## HITS:1 COG:no KEGG:FMG_1176 NR:ns ## KEGG: FMG_1176 # Name: not_defined # Def: hypothetical protein # Organism: F.magna # Pathway: not_defined # 4 569 5 561 561 295 35.0 5e-78 MSGRLENLVWTVSENYETKINLTIFKNEISENYKAAILGICYKYYDMPYVEKFLKAHYKL SANYKDMLTIAELSMENSLIDQLIKNRPGVCDFKCEFENKLFYKYSNSAAHNLGEELEMA YYQVKNKIIPKINNTVKLLLDDILNFKSKDTLELLVFLQSIFNKYFHIYKNLPSTEKVEN IIKEVKKKKEMQENGSAHLIVNYLDIAELEKYTIESAEFTSAKYENTKLTIEKNRSLKTT DKNLTASVEKHYGISYMKQSEVEKLEEKICTGVHEKVNLHFTKGEFKNPLSYNEQKAKEI YNENLNLFKEDELNYKRGIKNLSEIIKNSLLKNTEEYEIPSISGNLVAGSVWKSKHTNNS KIFKRNFTDYHGDISVDILLDASASQEERQSEIAIEAYVITEALTELNIKTRVFSFNNYF NYLVIRKFRDYNDSKLKNKEIFKYRASGSNRDGLAIKLLTDLIEKNSQDRKILIILSDGK PNDETNLGLVGIRDFGIKDYVDELALRDTYNNVLITKLKGIDVLGVFTGLEEDLETEKKI YGNDFAYITELKRFHQIVGIFLKSIADKLY >gi|289656173|gb|ADCS01000017.1| GENE 15 17464 - 18372 984 302 aa, chain - ## HITS:1 COG:BS_yojN KEGG:ns NR:ns ## COG: BS_yojN COG0714 # Protein_GI_number: 16078999 # Func_class: R General function prediction only # Function: MoxR-like ATPases # Organism: Bacillus subtilis # 51 292 58 304 304 141 35.0 2e-33 MKELLLSQGVSESLLNEVDKFLKFYSIDENINYRVPSPKFKYYGKDVWEKAIAGILSGNH ILLSGPKATGKNVLSENLALLFKRPLWTISLNINTDTSSLIGSDTFRNNEVILKKGPVYE TAEYGGFGVFDEINMAKNEALSVVHSALDYRRIIDVPGYGRLKLHEATRFIATMNYGYIG TRDLNEALVSRFLVIDMPTITNTDLIKILKDKTNLKDEYINRFAKFFMDLQKKSLNSEIS SKSIDLRGLISAISLMEYGLTINHAIQMGMSHKSFDIYEAEVVEDILKTLFEKNLSSSEL FK >gi|289656173|gb|ADCS01000017.1| GENE 16 18385 - 19146 1031 253 aa, chain - ## HITS:1 COG:AGc2926 KEGG:ns NR:ns ## COG: AGc2926 COG0730 # Protein_GI_number: 15888905 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 4 251 25 269 288 124 32.0 1e-28 MEYLTFKALIILLPLLFLAGVVDSIGGGGGLISLPAFLLAGLPIHMALGTTKMQSTCGTA MATLRFIKNRFVSFKLAFPAVIAAFLGASIGAKLMMFLGEDQLHKIMIIILPVAAFLVLN KKFFDSATSDELIINKKTYITVTISAFLVGIYDGMYGPGTGTFLILAFTVFAKMNVQFAN GHAKIINLASNITALIIFLLNGKIIIPLGLLGALASMAGNYVGSGLALKNAQKFTRPCIL FVLCILAAKILFI >gi|289656173|gb|ADCS01000017.1| GENE 17 19294 - 19485 221 63 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299143620|ref|ZP_07036700.1| ## NR: gi|299143620|ref|ZP_07036700.1| hypothetical protein HMPREF0629_00473 [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 63 1 63 63 109 100.0 6e-23 MKGSCCFSSGQINKFTILKEPNLSVRKISYDLALIDKLRGKLNSVFAPNNITISVSKFNS LFV >gi|289656173|gb|ADCS01000017.1| GENE 18 19531 - 20229 1015 232 aa, chain + ## HITS:1 COG:DR0226 KEGG:ns NR:ns ## COG: DR0226 COG0152 # Protein_GI_number: 15805262 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase # Organism: Deinococcus radiodurans # 2 230 62 290 294 257 53.0 1e-68 MEKLYEGKAKEVYSTEKSNEYIIRYKDDATAGNGEKKATIAGKGELNLAITTAIFEMLEE KGIKTHYIETLNNRDMRVKKVTILPLEVIVRNISAGSFAKRFGVEEGIVFSKPTFELSYK NDELGDPLMCEDHAIALGLVTKAEYDFLKDTTLEINELLKKFFEQINLKLVDFKIEYGKT DDGEIILADEISPDTCRLWDKDTNKKFDKDIFRRDLGDLIEGYKEVLNRMRG >gi|289656173|gb|ADCS01000017.1| GENE 19 20231 - 21580 1511 449 aa, chain + ## HITS:1 COG:CAC1392 KEGG:ns NR:ns ## COG: CAC1392 COG0034 # Protein_GI_number: 15894671 # Func_class: F Nucleotide transport and metabolism # Function: Glutamine phosphoribosylpyrophosphate amidotransferase # Organism: Clostridium acetobutylicum # 2 444 20 462 475 473 53.0 1e-133 MCGIIGIYSNSNVNKKLFYGLNSLQHRGQESCGITVSNGESLKREKGMGLVIDVFNENRL NVLEGNLGIGHVRYSTAGGSHDYNTQPLMAFARGIEMSLAHNGNLINHQILRTRLEEDGI MFQTGIDTEVILFLIARYYKGDIVDAVKKTMGIIKGAYSIVLLLKDKLIAFRDPMGIRPL VLGQTESGDVIFSSENAPIEIIGAQVKRDILPGEIVVVDENGIKSHFIEGAKKPKHCIFE YVYFARNDATLDKVNSYNFRRRCGELLSIEAPCDVDLVVPVPDSGIPSAIGYSQEAKIPF AEGLVKNRYMGRTFIKPTQEEREMAVALKLNPLRHVIEGKRIVLLDDSIVRGTTSANLIK RMRESGAKEVHLRITSPPVEYPCYYGIDTPSRINLIAANNSVEEIREKIGADSLAFLSMD GLQRATLIRDDRFCKACFNGNYPVDPIVI >gi|289656173|gb|ADCS01000017.1| GENE 20 21591 - 22619 743 342 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169632702|ref|YP_001706438.1| phosphoribosylaminoimidazole synthetase [Acinetobacter baumannii SDF] # 2 335 12 339 356 290 45 7e-78 MIDYKDSGVDIDSGNRAVELMKEHVKKTYTSGVFGDIGLFSGGFSLDEFKDMEHPTLLAS TDGVGTKLLIAQKMDIHNTVGIDLVAMCVNDLICQGAKPLFFLDYIGADKIIPEKISKIV EGISIGCIETGAALIGGETAELPGMYSKDEYDLAGFSVGIVDKNKIIDGKKIKSGNVVIG LASSGLHSNGYSLARKLFFEELNKTCDDIFPNSDKSVGEVLLTPTKLYVRTILYLIERYD ILGVANITGGGLVENVPRIIPDGLGVRIDKNSWDLPIVFKEIVNSKLVEEDELYRAFNMG VGMTIIVKSEDSDKILKDINENTTDKAYIIGEVIEGKGVELV >gi|289656173|gb|ADCS01000017.1| GENE 21 22616 - 23167 550 183 aa, chain + ## HITS:1 COG:Ta0082 KEGG:ns NR:ns ## COG: Ta0082 COG0299 # Protein_GI_number: 16081255 # Func_class: F Nucleotide transport and metabolism # Function: Folate-dependent phosphoribosylglycinamide formyltransferase PurN # Organism: Thermoplasma acidophilum # 3 179 8 188 203 148 39.0 7e-36 MRIAVFISGTGSNLKALIDAKKLNEFDSTIELVLSNKDAKGLFHAYNEKIPTVVTSDEDN ILNKLEEYKIDFIVLAGFLPIISKNILEKYKNRIINIHPSLLPKYGGKGYHGINVHKAVF ENKERISGASVHFVTDEIDGGEVIIQNQIDISDCRSPEEIAERVLKIEHSILKKAIKKIE EEQ >gi|289656173|gb|ADCS01000017.1| GENE 22 23164 - 24669 1833 501 aa, chain + ## HITS:1 COG:aq_1963 KEGG:ns NR:ns ## COG: aq_1963 COG0138 # Protein_GI_number: 15606962 # Func_class: F Nucleotide transport and metabolism # Function: AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) # Organism: Aquifex aeolicus # 1 501 1 506 506 450 47.0 1e-126 MKALISLTDKSNVEYLSKSLSELGIKIISTGGTLKVIRDFGVNAIDIESITNFPEMLGGR VKTLSPYVHGGILYRRGLKEDEDTIKEYKISPIDIVVVNLYDFQGALKTEIHESIVENID IGGPTLIRAAAKNYKDVLIVTDPSDYEELIERLKNNKVDIEFRERLAAKAYSLTAYYDSM ISRYFLEKTGADLKYRSFGFEKISSLRYGENPSQKAAIYRDNYVNSYLSNAEVIHGKEMS FNNYNDLNAAVELSAELGINTVVALKHSTPCAAAKGKNILEAYSKAYNADPVSIFGGIVS VNGVIDRETAVEMSKTFLEIIAATDFTKEALEILTSKKNVRLVKIDYNLKQQDIDLKYLD GVVLIQDRDTAEDGYEIVTKSKPTDMEKEDLIFAMKVVKYTKSNAIVVVKDGATLGIGGG QTSRVWALESIRNNHPDKDFSGSVLASDAFFPFDDCVRIAGEIGVCSIIQPGGSLKDKES IDRCDELNISMVFTGNRHFKH >gi|289656173|gb|ADCS01000017.1| GENE 23 24678 - 29585 5691 1635 aa, chain + ## HITS:1 COG:CAC1655_1 KEGG:ns NR:ns ## COG: CAC1655_1 COG0046 # Protein_GI_number: 15894932 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain # Organism: Clostridium acetobutylicum # 414 1368 4 979 985 790 47.0 0 MKILIIGSGGREFAIGYNLLKNDKNRELYFAPGNGGTNELGKNINIGAEDVDSLLNFALE EKIDYTVVGPEAALCAGIADKFEEKGLKIFGPRLEGALFEKSKAYTKKFLNKHNIKSAKY LESDNFEEAFEFATKLIEKNGKAVLKADGLAAGKGVLIAEDLGKAEDFLKNVLQKGIFGE KRVVVEEFLDGFEMSLICLCDSETIIPLPTSRDHKKIGSGEVGLNTGGMGTYAPNLEAES FFERIDEEILKPVLEGLKKEKIDYRGVLFIGLMISDSDINVLEFNCRFGDPETQVILELI ENDLLELLIKTSERKLNELELKVNNKKALCLVISAGGYPTEYEKGNEIVFDGEIECKVYH AGTKFDTSLKTNGGRVLNLIYSGENFDDVIKKVYQDAAKVHFKDMYYRTDIGPRVKRVYV TKKSEFDYESKELKQEIKNSLGIELNGLKVYRRYDIEISDAELEKILYTILSERPVDEIY FGEDALKLQSTMKSAIAVSYLPGQFDQREQGLLDTIALVNDEKVSASSTTVYSIDGADED ELLRIEKFLVNPVDSHRVGLLGIPTTLSNNAQKNKINRVYDGFINLDEDGLLKFLKEKSL AMSIEDLICVREYFKSENRDPNETEIAIIDTYWSDHCRHTTFNTELKIKFDEKTELDRAI KSSFDEYLKLREELKIKKPISLMSFGTILAKYLRANGELEDLEVSSEINACSVKIKVRID IDGKEELRDYLLMFKNETHNHPTEIEPLGGASTCLGGAIRDPLSGRAFVYQAMRITGSAN PMQSIEKTLEGKLPQKKITTQAALGYSSYGNQIGLATGFVDEVYHEGYVAKRMETGAVIA AAPLENVTRMEPKAGDLVLLIGGRTGRDGIGGATGSSKTHKTTSILTESAQVQKGNAPEE RKIQRLFRRSEVAKLIKKCNDFGAGGVSVAVGELSDGVDIYLDRVPLKYEGLSPREIAIS ESQERMALVIDKNDLDEFKKYTDEENLELTVVAEVTDKNRMTMYYEDEVICGMSYDFINT AGADRTQNVEVVSEDVPSILVNEDKDPENLSKYLADLNTTSKRNLIEIFDGSIGRNTVLY PLGGKGKVTPIQSMVAKIPSFDGDVKTVSLMSYGFNPYISESSQYIGGYYSVIESIAKLV ATGASTKNIRLSFQEYYEKLKDEKSWSKPLKSLLGALEASKFFKAPPIGGKDSMSGTFEN ISVPPTLISFAVTTEDIENIISPDFKAKGKIGLIKAKYNSVGLVDLEDLKLKFEKIYTDI KDKNIISAVAVTGKGTLPQVYESAVLNTGFDVKLDDLYSPLYGSFIVEYLEDRDFIEPIG KFSDEVIVNGIKLSGDKLEKAYLHTLDSVFKPKEQIKFAGLENSRIENRRTKSLKPVEKP LVVIPAFPGTNCEWDTAKAFENEGAEVKISVFKNQSNNDIKASIEELASLIRKAQIFAIP GGFSLGDEPDGSGKFIANVLRAPKIKDAIEYMLDKNDGLIIGICNGFQALIKTGLLPNGN ICEVKEDDPTLTFNTCRRHIASFVDTKILTVNSPWLTELELNKTYTMPVSHGEGRFVIND IRLKELLNNEQIVGAYEVSPNGSDYNIEAIISKDGKILGKMGHSERIADGLYKNMYNLEI QNIFRAGVKYFKEEK >gi|289656173|gb|ADCS01000017.1| GENE 24 29582 - 31009 1349 475 aa, chain + ## HITS:1 COG:CAC1821 KEGG:ns NR:ns ## COG: CAC1821 COG0015 # Protein_GI_number: 15895097 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate lyase # Organism: Clostridium acetobutylicum # 3 462 2 461 476 552 60.0 1e-157 MNRDIYQNPLNTRYSSYEMSHIFSEENKFKTFRRLWVELAKAEAELGLNITLEQIRELEE NIDNIDFELAEKYERELRHDVMAHVKTYGEAAKSAAPIIHLGATSCYVTDNTDIILMSNA MELVEKKLAALIENLCEFALKYKNLPTLGYTHYQAAQLVTVGKRASLWIQDFLMDLEEIR YRRKNLKLRGAKGTTGTQASYLKLFDGDHEKVKELDRKIVSALGFKSSLAVTGQTYTRKI DYHVLQVLSSIAQSAHKMTNDIRLLQNRKEIEEPFEKSQVGSSAMAYKRNPMRCERISSL SKYVISIAQNPAMVEATQWLERTLDDSANKRLSIPEGFLAIDAILEIAINVTDGLVVYEN VIKTHVEEELPFMATENILMEAVKLGGDRQKLHEKIRQYSMQAAREVKEHGRKNNLLELL SDDEDFKMTREDINEILNSKNFIGRSAEQVEEFIREEVKPLIQEYNTEYTVELKV >gi|289656173|gb|ADCS01000017.1| GENE 25 31173 - 31835 718 220 aa, chain + ## HITS:1 COG:no KEGG:Dtox_0436 NR:ns ## KEGG: Dtox_0436 # Name: not_defined # Def: S-layer domain protein # Organism: D.acetoxidans # Pathway: not_defined # 7 186 8 189 1226 122 35.0 1e-26 MKRGRKILLLLTLLLVLSSSNVYAKKYQDTRGHWAEKYIDSMSDAGFIVGYESDMFKPDN YISRVEFYAVVNSMANLEKTYAVTFSDVTISDWYYKEVAKAIKAGYLIPTTGKLNPDRPI TRQEVMGILGYMYKLKPDVSATTKFKDAQAFSAENRGYAGVLIGVGVVDGGPDLLLRPNA GISRGEICKILDMLMDEYGLPDKRVVVDSKIKFGDRNLYN >gi|289656173|gb|ADCS01000017.1| GENE 26 31927 - 32991 1133 354 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299143629|ref|ZP_07036709.1| ## NR: gi|299143629|ref|ZP_07036709.1| hypothetical protein HMPREF0629_00482 [Peptoniphilus sp. oral taxon 386 str. F0131] # 24 354 24 354 354 556 100.0 1e-157 MFKKYIKIILLIIVFVLLVFLFLTKSSLFSNKDIVFDRSVNVTDSASDFHISTNGLMIFD GKTMYICDKNANLIKSVSSKNRELKVFFANNYGFLYDEDVKKLYEYNETGELVNTLKLDE YLYNISYKNKNIILHFKGDNQESLKILKSDGKLYDLYSTSNYILAYDVYGSGAYYAIAEF KIEATGHQNIVTIVKNGNKKVNSYSSEITLFLSQSKNRTVMVTDKKMYIFFKDNKQSIEI PNISDILIADRNIYLLHSNIISKYNLNLKEKSKTILAANVDRLEKVSNSIYAYGDSDIGG DLGKAGQFYKRLGTSVDKIEISGIKIGTMKDGKISLYKVINSRNFNKNDAEVGI >gi|289656173|gb|ADCS01000017.1| GENE 27 32993 - 33829 769 278 aa, chain + ## HITS:1 COG:SPy1897 KEGG:ns NR:ns ## COG: SPy1897 COG0668 # Protein_GI_number: 15675710 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Small-conductance mechanosensitive channel # Organism: Streptococcus pyogenes M1 GAS # 7 269 4 270 281 144 31.0 3e-34 MEKFENVMKYLKAENGNLNFLGKIFEICIIFLVAYLFSLFISFIIKKNLHSQSIKKHNSY MRIVTITNLFIKMTKIIIYFLAVMLTIEVLGFNSTSLFATLGVGSIAISFGAQNLVKDVI NGVFIIAENQYSVGDLVEISNYQGYIEDIGIRCTKLRDFAGELYIIPNGKIGIVTNKQRG DMRAKIVFPVSIKEEPKNIIELIRENIGYLKDDDRILKGPDVWGVTNNTDRGYEITVAVY AKPGEQFKVEYEIRQKVVEAFIKNKVELPIVKAEVNQC >gi|289656173|gb|ADCS01000017.1| GENE 28 33823 - 34056 321 77 aa, chain + ## HITS:1 COG:BH4052 KEGG:ns NR:ns ## COG: BH4052 COG4481 # Protein_GI_number: 15616614 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 4 59 5 60 65 63 46.0 9e-11 MLVYEVGDVVTLKKGHPCGENKWEILRTGVDIKLKCLGCDRQIWISRIDFEKRIRKIKEG EKFISIIHHKKDDKETK >gi|289656173|gb|ADCS01000017.1| GENE 29 34397 - 35305 843 302 aa, chain + ## HITS:1 COG:no KEGG:STH2580 NR:ns ## KEGG: STH2580 # Name: not_defined # Def: hypothetical protein # Organism: S.thermophilum # Pathway: not_defined # 43 158 208 327 329 92 36.0 1e-17 MKKIYLLILILILISFEVSAKEIDVNLEYQLVKINDTVKNIPAYKVEGYSYYRIRDIASA LNKTNKRFDVSYDVQKNKIDLIRGREYQENLLLIYSKVEKTNLITTKLYIDGRPIIFSSI NINGYNYFRIRDLASVLDFNVEYDNIKKMIVINTATGYKSLGNDYLKAPQYTDLKTDKEF YSSISKSYADLYEVQKSVMEDLKFNGTNYSKLVSLKNSLFSFENYYNSILDSSYLKGNEK IKRMYEEFLDSFKLQNRDYYLLVTSIESTDKNSELDSIKIYENSFNKVKENFVKLTNELS QK >gi|289656173|gb|ADCS01000017.1| GENE 30 35525 - 39146 3657 1207 aa, chain + ## HITS:1 COG:no KEGG:PG0182 NR:ns ## KEGG: PG0182 # Name: not_defined # Def: von Willebrand factor type A domain-containing protein # Organism: P.gingivalis # Pathway: not_defined # 93 547 52 543 1226 94 26.0 4e-17 MKDNKKTITKKLLAFTLAFILLMTSLPLNVFAEMENESNSNFIEENAGEVKNPVGIGKNS KEENFEEIEATDLDVDSIKGEKAKESPYQAAKNPDNLVGNEIPDGTINYGPFEETKIFKV SGNMIRNAENRESSAPQWVQNLINPGGTLDPDLVNEGSVKAYKPVVEEDPNIANKWTVKM LVAARDSVKTSKIVLVIDTSGSMKDFGRMKGAKNAANAFVDNVLDGSQSTQIGIVRFASN VSIVSDFTSNKAKLHSAINALSAEGGTFTQAGVKQARTMLAGSGADKKYMVVLSDGVPTF NYKISHPNNYLIDGGPGSHTHEKQTGKQLPENEFLYNESATGSGNSMWKQYERVKIGGGI FPTYEYHYYNSGNCAIAESGFAKAANMRVFTVGLQTDATGSGVLRDIASAPGDFTEVTDV SQLTPVFEQIAAQILKTVNQATVNVNFNTGFQLPDDFDPATAGHSPGSEITVVDGKPKWT MATVATVFDENDPSLKYEYITYTVTINDAILKNNSPENGINPLGQISMTYTDQNGNPQTT DFPETQVTPKLFVLNKVVTNNAGGAAVDSDKREFQFKVEKVVGSGYTYHETIGLRPGEQK IIHNPDKNADYRVYELRTAKVYDENNENPLNFNVTTYYNKFEVTANGDLPTTTGDAPAGD GIGKSITGSILGGTAGKRLNVTFKNWEEEEARAKISIHKIVEQSRGISRQTPPTFTINLK RKAGVVPGMENEHNWDQTVGMNQTVTIPHMMRFTTYIVTEKDLASILPYAPKLGEQGKEV EITLYKVTAGGALGQVIDFTNVYNSSATVNVTATKTWENGPDADHTAPVFELYADGNKVE GVTPTIVPSSGTATSFTYTWTVQAINATTHLPIEYTVKEAGVGADNKITVNNHIYTVSQH GNEITNTYEIPNNGTFTATKVWSGDEKVTRPTMNFELWRRIGNAAGEQVPGAEVKEINGS ITTATWTGLETTTAAGDEYTFYVKESLKNPGDVNNDNWILGEFNTQNNSITNTVKTGDEN LGKLTVAKKLLETGNGVRALRGTPIKFSFKVTGPANYEETFELAPGESKVLTGLYFGEYK VEETNTQGYTATYSVADGKVTLKATEKEKTVEVINTSGGQGTVVEKTLEKVWVNGPKPTV TIELWRKNNVEGADKIDEKVDEFIVPANANGNDLKKTFTNLAKHDPKGNEFEYYAKEENV PANYTKA Prediction of potential genes in microbial genomes Time: Fri May 27 07:27:56 2011 Seq name: gi|289656172|gb|ADCS01000018.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.18, whole genome shotgun sequence Length of sequence - 28241 bp Number of predicted genes - 27, with homology - 26 Number of transcription units - 12, operones - 7 average op.length - 3.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 1387 1454 ## Bsph_1896 Ig-like, group 2 + Term 1421 - 1468 6.2 - Term 1626 - 1669 0.5 2 2 Op 1 . - CDS 1674 - 3035 1448 ## COG0534 Na+-driven multidrug efflux pump 3 2 Op 2 . - CDS 3043 - 3501 569 ## COG0350 Methylated DNA-protein cysteine methyltransferase 4 2 Op 3 . - CDS 3511 - 4326 904 ## CLI_2244 iron-sulfur cluster-binding protein - Prom 4406 - 4465 5.8 + Prom 4298 - 4357 9.5 5 3 Tu 1 . + CDS 4478 - 4882 597 ## COG3543 Uncharacterized conserved protein + Prom 4893 - 4952 6.7 6 4 Op 1 . + CDS 5040 - 6185 1278 ## COG0053 Predicted Co/Zn/Cd cation transporters 7 4 Op 2 17/0.000 + CDS 6200 - 7585 1706 ## COG0569 K+ transport systems, NAD-binding component 8 4 Op 3 17/0.000 + CDS 7563 - 9035 1493 ## COG0168 Trk-type K+ transport systems, membrane components 9 4 Op 4 . + CDS 9032 - 10405 1656 ## COG0569 K+ transport systems, NAD-binding component 10 4 Op 5 . + CDS 10415 - 11083 590 ## COG0692 Uracil DNA glycosylase 11 4 Op 6 . + CDS 11088 - 11867 763 ## COG1073 Hydrolases of the alpha/beta superfamily + Term 11960 - 12017 2.2 + Prom 11878 - 11937 10.3 12 5 Op 1 . + CDS 12180 - 12650 284 ## 13 5 Op 2 . + CDS 12568 - 13557 920 ## COG0471 Di- and tricarboxylate transporters 14 5 Op 3 . + CDS 13572 - 14588 1155 ## COG0294 Dihydropteroate synthase and related enzymes + Prom 14654 - 14713 7.1 15 6 Op 1 . + CDS 14839 - 16200 1481 ## COG2239 Mg/Co/Ni transporter MgtE (contains CBS domain) 16 6 Op 2 . + CDS 16210 - 16743 648 ## COG3758 Uncharacterized protein conserved in bacteria + Term 16747 - 16794 8.8 17 7 Tu 1 . - CDS 16779 - 17450 696 ## COG3738 Uncharacterized protein conserved in bacteria - Prom 17476 - 17535 6.2 + Prom 17494 - 17553 8.3 18 8 Op 1 24/0.000 + CDS 17615 - 17899 267 ## PROTEIN SUPPORTED gi|169824838|ref|YP_001692449.1| 30S ribosomal protein S6 19 8 Op 2 21/0.000 + CDS 17908 - 18420 635 ## COG0629 Single-stranded DNA-binding protein 20 8 Op 3 . + CDS 18433 - 18657 330 ## PROTEIN SUPPORTED gi|169824836|ref|YP_001692447.1| 30S ribosomal protein S18 + Term 18669 - 18705 3.5 + Prom 18846 - 18905 13.5 21 9 Tu 1 . + CDS 18975 - 19145 318 ## gi|299143653|ref|ZP_07036733.1| conserved domain protein + Term 19151 - 19194 7.6 + Prom 19474 - 19533 10.9 22 10 Tu 1 . + CDS 19586 - 23794 4983 ## COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) + Term 23800 - 23843 9.5 23 11 Op 1 . - CDS 23812 - 24402 493 ## gi|299143655|ref|ZP_07036735.1| putative transcriptional regulator, TetR family 24 11 Op 2 . - CDS 24426 - 25340 902 ## STH2256 hypothetical protein 25 11 Op 3 . - CDS 25367 - 25960 413 ## gi|299143657|ref|ZP_07036737.1| conserved hypothetical protein - Prom 26028 - 26087 9.3 + Prom 25932 - 25991 11.5 26 12 Op 1 . + CDS 26130 - 27452 1153 ## COG0617 tRNA nucleotidyltransferase/poly(A) polymerase 27 12 Op 2 . + CDS 27455 - 28241 828 ## COG1109 Phosphomannomutase Predicted protein(s) >gi|289656172|gb|ADCS01000018.1| GENE 1 2 - 1387 1454 461 aa, chain + ## HITS:1 COG:no KEGG:Bsph_1896 NR:ns ## KEGG: Bsph_1896 # Name: not_defined # Def: Ig-like, group 2 # Organism: L.sphaericus # Pathway: not_defined # 242 453 663 871 871 188 46.0 5e-46 GKVTLKAADKEKTVEVTNTSGGQGTVVEKTLEKVWVNGPKPTVTIELWRKNNVEGADKID EKVDEFIVPANASGNDLKKTFTNLAKHDPKGNEFEYYAKEENVPANYKKSIEGLKVTNTY VSPIVPPTILKGDVTANKIWRDYKAIHPTIWFKLYRNIVGGNLEEVPNAEIKELKEGTTK VTWTKQNLEDKKGNKYIFSVKEVDSNGRDYVPYGYEKSEVGLTVINSKKEKDSSNVIVTP APKLNKKDHFPYVMGYPDGSFKPEGNITRAEMTAIFSRLLTEKMHVGDNYPLSFSDVARS SWYAEYIGQLTSVGVIAGYPDGTFRPENSVTRAEFATVASRFITSKKSTGGFADILNNHW AKESIENVRAEGWISGYSDGSFKPDQYITRAEVVSIVNKMLDRYADKNYVDSHAMELTNY TDLSKNHWAYYPIMEASNGHDYERLSNNQEVWKTSWKPRKY >gi|289656172|gb|ADCS01000018.1| GENE 2 1674 - 3035 1448 453 aa, chain - ## HITS:1 COG:PAB1439 KEGG:ns NR:ns ## COG: PAB1439 COG0534 # Protein_GI_number: 14521613 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Pyrococcus abyssi # 1 450 3 467 468 131 27.0 4e-30 MSKTVSDRRDMILNGDIFKSLLILSMPTILMAFVQSLIPLIDGYFLNNYGGVLVAGAVSF SQPVINILMGLSQGLGVASMAIIGQYNGRAEIKKVKHFSLQILIFSFGMGILTTPLSILI AFLLSKNVDPQVAPYIYNYLATYSFVMPLLFLAAIFNGIKNATGQPEATFIRMIILLILK IIFNFIYLEILTLEVKGAALASLSSYVIIGIWMFYDLFIKESETKLNLKSYKFDYIAIRE VIKIGIPSMFASTFVFFGFFLINMEVQSYGAKVLNASGIASNINSLAFTVPSSISTTVTT MVSMNIGIGESKKAKSIMYKALIASLIIGVIIVMIFWPTAPKLVKLFQKNNPDQEIMKIA THALNIYTFSVFPFAIYMIIQGTYIGLGRTKAPLFMGVLRIWLFRFLFILAFKKSLGVNA VFWGNLFSNSLAAIVFFIAIQFVSWQSTILKEN >gi|289656172|gb|ADCS01000018.1| GENE 3 3043 - 3501 569 152 aa, chain - ## HITS:1 COG:MA4322 KEGG:ns NR:ns ## COG: MA4322 COG0350 # Protein_GI_number: 20093111 # Func_class: L Replication, recombination and repair # Function: Methylated DNA-protein cysteine methyltransferase # Organism: Methanosarcina acetivorans str.C2A # 5 148 6 154 156 136 48.0 2e-32 MKYSYNTKIGPLTIYEDNGYITEINFNKTMPDENYAENETIKNCFDEISKYLDGKLKYFT FKFKLSGTDFEKSVYNALLKIPYGEVRSYKDIAIYIKNPKAYRAVGLANNKNKLPIVVPC HRVIGANGKLIGFAGGLDIKAKLLEIEGYLKK >gi|289656172|gb|ADCS01000018.1| GENE 4 3511 - 4326 904 271 aa, chain - ## HITS:1 COG:no KEGG:CLI_2244 NR:ns ## KEGG: CLI_2244 # Name: not_defined # Def: iron-sulfur cluster-binding protein # Organism: C.botulinum_F # Pathway: not_defined # 1 271 2 273 273 283 52.0 4e-75 MINRICTFYFTGTNTTKKVVKRFSRSLGKYLSIDNFYDYNFTTPKMRESMPVFKDGDIVI AGVPTIAGRVPNLLLPYLNTINGKGALGVAISLFGNRNVDDCLVELRDLMENGGINVIGG GAFVAEHSFSKILAKGRPDEKDFEIVDNFAKDVAEKIKSNNLSKPNIIGEVPYRPYYTPR DRHGNGINFVKIKPKTDMSLCIDCKICARECPLGSINFDNVEEIPGKCMKCCACIKKCPT GAKYFDDEGYLFHARELEDMYQRRAEPEYFV >gi|289656172|gb|ADCS01000018.1| GENE 5 4478 - 4882 597 134 aa, chain + ## HITS:1 COG:CAC3455 KEGG:ns NR:ns ## COG: CAC3455 COG3543 # Protein_GI_number: 15896695 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Clostridium acetobutylicum # 1 118 1 118 129 100 41.0 7e-22 MIKLRPHHLLCTQSYMGAGYSDGFVENMNKIVDNLRSDKDLKIEIVFENDNICEACPHNI GGVSCESDDVVLPIDNRVKNILELENGEYCYSDLINKLNEKITKDDFIGLCCECQWWDGI CKDIFMNKILKKYK >gi|289656172|gb|ADCS01000018.1| GENE 6 5040 - 6185 1278 381 aa, chain + ## HITS:1 COG:CAC0606 KEGG:ns NR:ns ## COG: CAC0606 COG0053 # Protein_GI_number: 15893895 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted Co/Zn/Cd cation transporters # Organism: Clostridium acetobutylicum # 2 343 15 361 403 238 37.0 2e-62 MLVQKILKAGNYGTKNESRLKISVMTSIAGMLANVFLCIVKVILFLFTNSLSILADAINN LTDCISSVSTIIGAKLSTMPGDEKHPYGHGRIEYISGLVVAIFVFVTGVEFIRISIGRII HPKHIEYSTATVFLMILSIAVKLYMVVFYDEISKKINSLPAKAQSKDSMGDVIITGVVVI SIFVHKMTGWLVDGYVGVLISLFVIYSGYELIRDTLSEIIGEAPRNVVKKIKDSVKKYDE VLGVHDIIVVNFGPQKTYITLDVELRYDMSLVRAHSIIDRIERELEAEFNCIISIHVDPV GMYSEDEEKFARVLKDIVKKNPTVWSFHDLYYENGVLRVDIVVDGNKVHNDMECDELKLY IQSEFEKILKCNYEINIDRYF >gi|289656172|gb|ADCS01000018.1| GENE 7 6200 - 7585 1706 461 aa, chain + ## HITS:1 COG:MA1480 KEGG:ns NR:ns ## COG: MA1480 COG0569 # Protein_GI_number: 20090339 # Func_class: P Inorganic ion transport and metabolism # Function: K+ transport systems, NAD-binding component # Organism: Methanosarcina acetivorans str.C2A # 1 444 1 447 448 246 34.0 6e-65 MKVLIAGAGKLGFRLASALISEKCDVTMLDSNEKVIENINNSLDVLTVNANALDFEILEE LDMQSYDLLLATTTSDEANVLISTISKKLGIKKVIARVRNPEYHNQIKFIMTELGIDEII NPDYATAVSIEKYLLKKYLLMSDDFADGRVKLVDFHIGADENFVGRRLMDLKGFDGLLIT AITRNGNTIIPNGATVLKEGDVILIAGASQDIEDFDRKHSGINKHKSVKRVMILGGGKLG LYLGILLNDAGIETTIIEIDKNRCIKLKEMLPNAIIINGDGTDYNLLEEEVVESYDAFVA TTGFDETNLLMALTVKQVGVYKSVAKISRPNYNKIIGKLGVDAAFNTSFITASEILKIIR GEGSLSVSLMLDGETEFTEIRLGEDLDILNVPIKDLKLPNGVLITTIVRKNDVIIPNGNS ILLPEDRIIVFFMHDQIDKVKGFFYPKHRRGGLISELRNYI >gi|289656172|gb|ADCS01000018.1| GENE 8 7563 - 9035 1493 490 aa, chain + ## HITS:1 COG:FN0993 KEGG:ns NR:ns ## COG: FN0993 COG0168 # Protein_GI_number: 19704328 # Func_class: P Inorganic ion transport and metabolism # Function: Trk-type K+ transport systems, membrane components # Organism: Fusobacterium nucleatum # 1 476 1 475 483 315 42.0 2e-85 MNFAIIFKVLSLLLRIETVFMLPPLILSFYIKDGATSAFLCTIGIILITAFIMEKTPSSS GRISPKDGLFIVSIGWIFASIFGALPLYISKSLPTYIDCLFEIVSGFTTTGASVIEDVEV IAPSVVLWRSITHWIGGMGILVFTISLLPKLGVGGFQIFKAESPGPVAGKIEPKVSQTAK RLYSIYMIITIVLFILLLIGGMTPFDAIIHTLGVVGTGGFSSKTASVAHYNSWGYYIPIV MSMFMVFCGTNFSLYYLLYKKKIKSIFQDEEFRIFYGIIIFSIIIVGFNLYCNNYGTLGR SMIDSLFQVTSISSTSGFATADYDMWPSFSKYILLVLYFIGSSAGSTAGGMKVVRIVVMF KLVKREIQKVLHPKAVIPIKLNNKILNDEIVMGIMSFLGAYIIIFITASAIVALSGVDIL TSISSVVTMLSNVGPGFSAVGPTKNFFFFGVGYKMLFCMLMLLGRLEIFTMLALLSSNSI GNRYVKGSTK >gi|289656172|gb|ADCS01000018.1| GENE 9 9032 - 10405 1656 457 aa, chain + ## HITS:1 COG:YPO0239 KEGG:ns NR:ns ## COG: YPO0239 COG0569 # Protein_GI_number: 16120577 # Func_class: P Inorganic ion transport and metabolism # Function: K+ transport systems, NAD-binding component # Organism: Yersinia pestis # 1 429 1 437 458 182 28.0 1e-45 MKILIVGAGRVGQKIIKSLVDENYELTIIDNDNKALSEIEKSPHIKTLLGDGLNRELIMT LNISEYEFIVAATNSDKTNILVSTLAKTLGAKYTIARINQADSVEQLLYLRDSLGIDYIV NPARETVKEIETILKSDINYQADSFGRGKIEVVGHNVKLDKSFEGLKIKDIGSLSTILVV AIERKNNLIIPNGDTIIESGDYLYLMGLTKDISNFKMKHFQIYNKKRKRVVIVGGGGISE QLASSLQDHDITIIEKDRKKADELRRKMSNVFIINKDFSGAEFFDESQIEQCDVFITLTE NDELNIVLGMMALKLSINQVMVKATSLNYSKLLDGLDFTAVLNPLTITSNKISKKLRFDR GISIYLAFNGEAEVSEIKLSDNSPVIGKSLMELEIPKGVLIGGIIRKDNTAVVPRGKTVF EKGDTIVAFYKNENKKGLEKFINPGLNRGFLSDLWYS >gi|289656172|gb|ADCS01000018.1| GENE 10 10415 - 11083 590 222 aa, chain + ## HITS:1 COG:lin1190 KEGG:ns NR:ns ## COG: lin1190 COG0692 # Protein_GI_number: 16800259 # Func_class: L Replication, recombination and repair # Function: Uracil DNA glycosylase # Organism: Listeria innocua # 5 222 4 221 224 275 59.0 4e-74 MKDIFKNDWQGLLAEEFKKPYYLNLRELLINEYKNYEIFPPANEIFNAFKYTPYSDVKVL ILGQDPYHNVGQAQGLCFSVKEGVKLPPSLQNIYKELNSDLGIEIPTTGSLINWAKQGIM LLNTTLTVRAHSPMSHAKIGWEIFTDRVIELIDEKQEPVVFILWGNHAKSKKTLIKNERH LVITGAHPSPLSANRGFFGSKPFSRANEFLRQNGIVPPSWEV >gi|289656172|gb|ADCS01000018.1| GENE 11 11088 - 11867 763 259 aa, chain + ## HITS:1 COG:lin2363 KEGG:ns NR:ns ## COG: lin2363 COG1073 # Protein_GI_number: 16801426 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Listeria innocua # 11 220 4 216 250 83 31.0 3e-16 MEYLVSNFTTVKKIYIDKVPAYVITPKTDEKKYKTIIFYHGWSSCAKNQIFRASIFANYG YQVILPEAQYHGERGSLDYDDLDITKRYLLEVIMHNIEEFPSIFEYVVKELNADKKNIIV AGHSMGAMTAGGLFTFKKSLKAGLIFNGCMDWKVLVNELIKDEDEISYERMRINDFMLQM NPMIHLEDIKDRALLLFNGENDDVVNPIPQENFYKKAVCEYENKEIICFEKFEKTYHQLT TQMIEEAIIFLKEKVEVID >gi|289656172|gb|ADCS01000018.1| GENE 12 12180 - 12650 284 156 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKKVKFYRLLAILAATILIGILNPFDMEIFQRILLSALIFTVATWATEAMNKSIACIILL TAFIFFGKTKAVDVINFAWSPTLFLIVTSTLLSVGIMKTGIIHKHFEKLFRKSSSSMFKI LLLPYIWNSLGIFNSSSIRKGNYYRSYLQQLVKRIK >gi|289656172|gb|ADCS01000018.1| GENE 13 12568 - 13557 920 329 aa, chain + ## HITS:1 COG:SA0645 KEGG:ns NR:ns ## COG: SA0645 COG0471 # Protein_GI_number: 15926367 # Func_class: P Inorganic ion transport and metabolism # Function: Di- and tricarboxylate transporters # Organism: Staphylococcus aureus N315 # 60 329 239 517 517 62 24.0 1e-09 MVFLIPQAFARVIIIGAIYNSLLKESSEDEKKAKQALIFNGFIGITMTYMLFSSGDIVLN QAAINFSGDEVKAVLTFGKWFEMMALPSIISSVIVLFLTYIIFKKELSNFNENMIEKSNF ENNELSKSKQQLGIGIMLVVIAFWMTESMHHIAPWIVALLAVIIMFAAKILSKEDLKSVN PHFLLFLVTVFSIGKVFGQAGVTNAIFGKLETLIPSVNTSEYLIVIAIVAMVLHICIGSS VATMSVVLPILIPLAQSSGYRPEIITLMIYIIVNVHFLLPFHHATVMIGAGKGYYPDKYM FRFGSVMTVVSLILLALFYFPWWRILGVL >gi|289656172|gb|ADCS01000018.1| GENE 14 13572 - 14588 1155 338 aa, chain + ## HITS:1 COG:SP0289 KEGG:ns NR:ns ## COG: SP0289 COG0294 # Protein_GI_number: 15900223 # Func_class: H Coenzyme transport and metabolism # Function: Dihydropteroate synthase and related enzymes # Organism: Streptococcus pneumoniae TIGR4 # 18 321 10 313 314 322 55.0 8e-88 MERVFRYKNVELSSGNSTILCAIVNVTPDSFSDGGLWYGKDLAVNRALELIKDGAKMIDI GGESTRPGSTPVSVNDEIERIVPVIKELKKITDIPISVDTWKVEVAKAAIDAGADIINDI TGFLGDPEMAKVVGNSKVGAIVMFNPIIARPNHPGSKIFPSFGGEGIFSEKELLEMETVQ IEEVMKLYFEKSLQRAKECGIEKERIMLDPGIGFGLTKRENLCLIKNIELIHKMGYFAFL GVSRKRFICNIIQDAGFEIDPETEDGRQNRDLSSANLTAIASFLGTEVVRVHMIKSHLMA SEIGDSIRLAEKMEDINFKSYSKKIEKEPIKVFFICKR >gi|289656172|gb|ADCS01000018.1| GENE 15 14839 - 16200 1481 453 aa, chain + ## HITS:1 COG:TP0917 KEGG:ns NR:ns ## COG: TP0917 COG2239 # Protein_GI_number: 15639902 # Func_class: P Inorganic ion transport and metabolism # Function: Mg/Co/Ni transporter MgtE (contains CBS domain) # Organism: Treponema pallidum # 14 446 9 441 449 403 48.0 1e-112 MDYQEYKEYEDYFRKLIEEKQLKELKSCITELNVVDIAEIIEDLDDKDMLLIFRMLPKEI SAEVFSHMERYNQVRIVNSITEPELNSIVDELYFDDMIDLLEEVPANVVTKVLANAPVNE RKLINEFLRYPEDSAGSIMTIEYVVFKPDMSVRDAMSHIKEIGMDKETIYTCYVENEYKM LIGFVSLRTLVISDEDKKISDIMIDDVVCVNTLDDREDVADKFKKYGFIALPVVDGEYRL CGIITFDDIMDVVEEEATEDFHRMAAINPSEHAYLDQSTWELAKNRIPWLLVLMISATLT SGIIENYNYIIAQFLILTAFIPMITDTGGNSGSQSSTVIIRALATGEINLSDAFKVVFKE IRVALICGGILSFVNFMRMIFVSKVEFGISLLVSLTMLVTVVLSKFLGAALPMLAKKINI DPAIMASAVITTIIDSVVLIIYFNLAVRLLPII >gi|289656172|gb|ADCS01000018.1| GENE 16 16210 - 16743 648 177 aa, chain + ## HITS:1 COG:FN1763 KEGG:ns NR:ns ## COG: FN1763 COG3758 # Protein_GI_number: 19705082 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Fusobacterium nucleatum # 2 146 3 150 184 82 36.0 5e-16 MKKILKEEFKTTNWSGGTTSQLFISPEDADVSKKDFDFRISSATCDLDESIFTPYNDYMR YITPLDGNLKLINNGADINIEPYEIYYFDGSDSVAGYSKVRDFNLIIKKGIDGKMYSIDV KNEVEIVGTSEVTIVFNYDGNLFAEGDKFSAFSAISLDNGEKVNVSGSGRILICEVK >gi|289656172|gb|ADCS01000018.1| GENE 17 16779 - 17450 696 223 aa, chain - ## HITS:1 COG:ECs4873 KEGG:ns NR:ns ## COG: ECs4873 COG3738 # Protein_GI_number: 15834127 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 58 209 42 202 205 98 35.0 9e-21 MKRLLIIFILAITVACNKNPNTYNNETAQQKILEKNYIKSTIDYNKNGIDDYSDILIGAK KDAVNHPEYDGSYVDGGYPPDNKGVCTDLVWRAFKEAGYNLKDMIDADISRDKSYYHIEK PDPNIDFRRVPNLDKFFKKYAVSLTTNINDYDAFNPGDIITYLDKPQHIGIVSDIKNKDG RAYLIHNAGQSERENDNLDFGKISGHYRFDSSKINPEILKPYN >gi|289656172|gb|ADCS01000018.1| GENE 18 17615 - 17899 267 94 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169824838|ref|YP_001692449.1| 30S ribosomal protein S6 [Finegoldia magna ATCC 29328] # 1 94 1 94 95 107 48 9e-23 MNKYEAIVMFYPDVEEERRVSSFERLKGIIEENGTISNVDEWGMRKLAYEIEYYKEAYYY LVEFEAVPETVKEFDRVSKILDSVMRHMVVRLDK >gi|289656172|gb|ADCS01000018.1| GENE 19 17908 - 18420 635 170 aa, chain + ## HITS:1 COG:lin2402 KEGG:ns NR:ns ## COG: lin2402 COG0629 # Protein_GI_number: 16801465 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-binding protein # Organism: Listeria innocua # 1 170 2 160 160 109 41.0 2e-24 MNIVCLTGRLTRDPELRYTPNGAAVVRFTLAVDRRLSKEKRIEAESNNQQTADFVSCIAW NKTAELIANYLQKGRRIGVQGRIQTGSYERDGHTVYTTDVMVDTMEFLDTAQQGQQMQRP AFNQSPASNNQPVNSAYSNNFNKPSNNFGSVSESDDVDGFFPIDNDDIPF >gi|289656172|gb|ADCS01000018.1| GENE 20 18433 - 18657 330 74 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169824836|ref|YP_001692447.1| 30S ribosomal protein S18 [Finegoldia magna ATCC 29328] # 1 74 1 74 74 131 83 4e-30 MQRRFRPRKKVDPFEKDKTKKIDYKDIALLRNYISERGKILPRRITGLSAKHQRAITTAI KRARQVALLPYSAE >gi|289656172|gb|ADCS01000018.1| GENE 21 18975 - 19145 318 56 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299143653|ref|ZP_07036733.1| ## NR: gi|299143653|ref|ZP_07036733.1| conserved domain protein [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 56 1 56 56 72 100.0 9e-12 MAYQINDSCIACGACKPECPVDCISEGDIYSINADQCIDCGSCAAVCPTGAPNPED >gi|289656172|gb|ADCS01000018.1| GENE 22 19586 - 23794 4983 1402 aa, chain + ## HITS:1 COG:CAC2401_1 KEGG:ns NR:ns ## COG: CAC2401_1 COG1924 # Protein_GI_number: 15895667 # Func_class: I Lipid transport and metabolism # Function: Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) # Organism: Clostridium acetobutylicum # 3 659 5 663 663 771 57.0 0 MKIHMGLDIGSTTVKLVILDDDYNILHSTYRRHFSDVKNTVRDVINECYDRFKDDILTVS VTGSGGLSVHKLLGINFIQEVVAGTEAIQKYIPQTDVAIELGGEDSKITYLRGSIEQRMN SICAGGTGAFIDQMASLLQTDASGLNELAGNYSKLYPIASRCGVFAKTDVQALINQGASK SDIAISVFQSVVNQTISNLACGRPIRGKVAFLGGPLHFLPMLKDRFVKTLELKDDFIISP DNSQIFVALGAAISSFNDDDIPFKKLYSKVNSNDVIEEKSSVILEPLFKNDEEILEFREA HKTRDMPRAELKEYEGKMYLGIDSGSTTSKLILISENNEILYSHYGSNKGNPLEIVIEQL KKIYDEKNEKSYIASAGCTGYGEDFLKAALNLDFGEVETIAHFKAAEFFDPNVDFILDIG GQDMKSMKISNGIIESILLNEACSSGCGSFLETFAHTVNMTPSEFSNAALKSRRPVDLGS RCTVFMNSNVKQAQKEGASIEDISAGLAFSVVKNAIQKVIKVRDPKELGNNIVVQGGTFL SDAVLRAFEIITGTKATRSPIAGLMGALGMALISKEKSTGVSNIISSDELDKFTYKSIST NCHQCTNNCRLSVNIFSNGKRYITGNRCEKGAGIIKRDEEELPNLYKYKYNRLFSYESLS EDEAYRGTVGIPRVLNMYENFPFWHTFFTSLGYRVVLSDKSSREIYESGIESISSETACY PAKIVHGHIENLISKNVKMIFYPSVFYEEREYKSADNTLNCPVVAGYSEVIKNNVENLKD RNIKFLNPFISFDNRKKLENRLSEIFVAIPLRDIKEAVKRAYSESDRYKMDVHAEGIRAM EEIKLRNIKGIILAGRPYHIDPEINHGIPELINSLGLAVISEDSIANLVDVDGRLRVLDQ WNYHSRLYRAAKFVGTHKNLEMIQLNSFGCGIDAVTTDQVNEILKGYHKIYTVLKIDEVN NLGAIKIRIRSLLEATEKRKNFEKPILIDEKPVLYTKDMSKTHTILLPQMAPLHFKVFAS VMQAEGYNVEVLEDLDFHVVNEGLKYVNNDACYPSIFVVGQFIDALKSGKYDTDNLTLLI SQTGGACRASNYVGFIRKALHDAGYGNIPVLALSFQGIESHPGFEIGKKKGIRILQKLIV SMLYADLIMRLTQATRPYEKIKGSANQLSIKWIGICSDSNNSFSIKKFEKNVHDIISEFE SLDVNDIKKPKVGIVGEILVKYLPAANNYIVDKLEDEGAEVVIPDLTDFIMYSFKNAQIK HEELSKPILSSIFCNMGIWFIERYREVIRNRLAQSRFDCPKKIEEIMEYAREYVDLGNQY GEGWLLTGEMVELIEMGVENIVCVQPFGCLPNHITGKGVIKAVRETYPNSNIVPIDFDAS ASEVNQFNRIKLMLSQARKNMN >gi|289656172|gb|ADCS01000018.1| GENE 23 23812 - 24402 493 196 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|299143655|ref|ZP_07036735.1| ## NR: gi|299143655|ref|ZP_07036735.1| putative transcriptional regulator, TetR family [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 196 3 198 198 318 100.0 1e-85 MNNSVENVKLIKESILTVAYDLFSKNGYTKTNINEIAAICGISRTPIYYHFGNKENLHRA ALKMLLKKYDKRVDIALYNKSSIENRIVKIMDLIFLHNKELFHRQQDIIKYGPKESYNEY VDFLKRQAEKIKSSIEIERANEGKKHEMNSDALLKLFQLLFNGLLLTLQNNVFEFNKSEY DDAILMFVKLINSSVK >gi|289656172|gb|ADCS01000018.1| GENE 24 24426 - 25340 902 304 aa, chain - ## HITS:1 COG:no KEGG:STH2256 NR:ns ## KEGG: STH2256 # Name: not_defined # Def: hypothetical protein # Organism: S.thermophilum # Pathway: not_defined # 22 138 22 138 382 112 43.0 2e-23 MKKFINLLFVILILIIGTNVYAAKPIKIELDGKEIKTDVMPYIKNSRTLVPLRFISEALN YKVDWNAEKREVTVSNNMTTIVLTIDKTEVLVNGTAKENDVAPEITKDRTFVPIRFIAEN LGVTVDWDKDNYIVKLSSTDKYKNLSADEKEYISKITSLSTKLQTNFNELKKYYFEDASK YTPQEIAVKYNSLKSEIENLAAEINSLNAPKKFTNSDRFLKEAAILTKDMVNEFTSALSD GNSDSAKKVIGIQTKLAIKLAEIKKALEAELEGKIYEPDKDIKSFNETSNLLEDQTIKNL LNKI >gi|289656172|gb|ADCS01000018.1| GENE 25 25367 - 25960 413 197 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|299143657|ref|ZP_07036737.1| ## NR: gi|299143657|ref|ZP_07036737.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 197 1 197 197 315 100.0 9e-85 MNKKFLLIIILCFSILLIGCGKNKNTEAEKPETKIQTNKSANDKNTAVSNEQKSKNVEDA DSENTDILDEPVENETQITGQNVKLSREVLKNLMDNSDYISRVRIQVGQDNTTDVSFLED YKGDLSSVVIELPKNLLQNREYIIFYRDNVNGKIEPVRGAESFIEVQSGNDATLNYIESI YQKNDMPTVKNNTSSNK >gi|289656172|gb|ADCS01000018.1| GENE 26 26130 - 27452 1153 440 aa, chain + ## HITS:1 COG:FN0243 KEGG:ns NR:ns ## COG: FN0243 COG0617 # Protein_GI_number: 19703588 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA nucleotidyltransferase/poly(A) polymerase # Organism: Fusobacterium nucleatum # 8 440 16 451 451 267 39.0 3e-71 MPTEILEILNILNMRGHLGYIVGGSLRDMLLDRIPFDFDIATDAKPYEIEEIFEDYLFYS IGKKYGTITIKYKDYIVELTTFRKEGIYENHRYPTEVFFTENIEEDLKRRDFTINAMAMD GNGNIIDLYSGISDIKSRVIRTVGNADDRICEDALRILRAIRFAGTLDFKLDCDLKDAII KNRSLLNNISKERIASEFNKILLSEMPSKSLKLMADTKVLDIIYPKLYNTVGYNQKTPYH NKTLFEHLLCVVDNVPKNFELRLAALFHDIAKPSTLSVDKNGIGHFYGHAELGAKMAEEI LRENRYSNSTIKKVSTLILYHMKVHDNMTDKALRRQIRKVGAENILELYELMIADRFCTM TNRDTKFLLDRKNRITELLKESTSKEKFLAVNGRDIMTLGFKEGKIIGEILEYITEVVLD DPSLNNREELEKIIIEKYGR >gi|289656172|gb|ADCS01000018.1| GENE 27 27455 - 28241 828 262 aa, chain + ## HITS:1 COG:CAC0484 KEGG:ns NR:ns ## COG: CAC0484 COG1109 # Protein_GI_number: 15893775 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Clostridium acetobutylicum # 1 262 1 263 448 272 53.0 4e-73 MGKLFGTDGIRGVANLELTPELAYNVGRAAGYILSKDTKGKILVGRDTRLSGNLLESALI SGIMSIGLDVELAGVIPTPAVAYLTRKGDYLAGVVISASHNPFEYNGIKFFSSEGYKLPD VVENQIEELIFSDTKIYKNATYGDVGTVTYSLNLKKEYEDYLVSISNVDLTGKKIAIDTG NGALSEIAEHVLRRLGAEVYVINNTPNGENINLSCGSTNPNLIKELVIQTGADIGMSFDG DADRIIAVDEKGNIVDGDHILA Prediction of potential genes in microbial genomes Time: Fri May 27 07:28:42 2011 Seq name: gi|289656171|gb|ADCS01000019.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.19, whole genome shotgun sequence Length of sequence - 3754 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 3, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 1 - 816 1018 ## COG1109 Phosphomannomutase 2 1 Op 2 . + CDS 827 - 1666 845 ## COG1307 Uncharacterized protein conserved in bacteria + Term 1690 - 1732 7.4 - Term 1682 - 1714 4.0 3 2 Tu 1 . - CDS 1759 - 3024 1186 ## COG0285 Folylpolyglutamate synthase - Prom 3048 - 3107 7.2 + Prom 3004 - 3063 8.8 4 3 Tu 1 . + CDS 3233 - 3739 722 ## Amet_4324 hypothetical protein Predicted protein(s) >gi|289656171|gb|ADCS01000019.1| GENE 1 1 - 816 1018 271 aa, chain + ## HITS:1 COG:CAC0484 KEGG:ns NR:ns ## COG: CAC0484 COG1109 # Protein_GI_number: 15893775 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Clostridium acetobutylicum # 1 269 178 446 448 272 53.0 5e-73 IDTGNGALSEIAEHVLRRLGAEVYVINNTPNGENINLSCGSTNPNLIKELVIQTGADIGM SFDGDADRIIAVDEKGNIVDGDHILAICATYLKKENRLLNNTVVGTIMANIGLKRYLSEI GADLVYTQVGDRYVLEEMRRGNFVIGGEQSGHIIFLDYNTTGDGLATGLHILEVMGKLNK PLSELNELMTSYPQVLVNAKVRNDLKNKYMEFEDIRAKVYAIESEFKGKGRVVIRPSGTE SLVRVMIEGENEDVLKKYAGELAKYIENRLS >gi|289656171|gb|ADCS01000019.1| GENE 2 827 - 1666 845 279 aa, chain + ## HITS:1 COG:SP0742 KEGG:ns NR:ns ## COG: SP0742 COG1307 # Protein_GI_number: 15900637 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 1 278 1 277 281 174 35.0 1e-43 MDYRIIVDTGCDITEEMEREMNILSVPFKITVDDVEFVDDENINLDEFLYSMIKSNNPIR TSCPSPYDYLEKLNKCEEKNIFVVTISSKVSGSYNSAVIAKNDYVSEHPDKNVFIVDSKS ASAGQTSVVLKLWEIINEASSFEEKTKKITTEVDNNKTFFILESLDNLIKNGRIKKTAGL IANILNIRPIMTTDDGDICLFEMNRGFKKSLSKLANAIGNVASNLEEKVLVISHVDALEK AKDLEKKVRELYKIKDVIIIHTRGLSSGYADNGGIVIGL >gi|289656171|gb|ADCS01000019.1| GENE 3 1759 - 3024 1186 421 aa, chain - ## HITS:1 COG:CAC2398 KEGG:ns NR:ns ## COG: CAC2398 COG0285 # Protein_GI_number: 15895664 # Func_class: H Coenzyme transport and metabolism # Function: Folylpolyglutamate synthase # Organism: Clostridium acetobutylicum # 22 420 22 429 431 285 42.0 2e-76 MDYKNYLDWMVNRGDPQGDYTLDNVKKLLEELGSIQNKIKIIHVAGTNGKGSVCSYIQNT LSGSNLKCGLFISPYIDDIRETIQINGEYISEDDFVKCMEIIYPIVLKLDSEGYYVTSFE IFVAVAFLYFYKNKVDTAVMEVGMGGRFDATNIFDAPIATVITSISLDHINILGKTLKEI AWQKGGIIKDNVPVFIYPQKEEVMAELIRIAKEKNAPVHTFSLDDVKDIFSTDKYNEFSF REHKNMRTSLLGKHQVYNASLAIMTLDYLKNFFPISDDNLRKSISSAKNIGRIEVIKENP TFVLDGSHNAESIDALIENLKTFSYNRLILGFSVLGDKDIDYILKNLIPLASSVVLTTID NPRAAELEFLKREVSKYSNEVYAFEDRKIAFDKTVSLANEDDMILWCGSLYLIKDIRKFI V >gi|289656171|gb|ADCS01000019.1| GENE 4 3233 - 3739 722 168 aa, chain + ## HITS:1 COG:no KEGG:Amet_4324 NR:ns ## KEGG: Amet_4324 # Name: not_defined # Def: hypothetical protein # Organism: A.metalliredigens # Pathway: not_defined # 3 168 17 182 187 105 43.0 4e-22 MKKSNTKIIVRAAFLVALSIVLTRFLSVMVTPQLRVGIGSMPIILSGMLYGPVVGGIVGL VTDAIGVMINPQGTPHLGFTLSSILTGLLPGLICMKMLKDNDEKLNVATIVSCVIVMLIV HIGLNTYWLSQLFGKAFMAMLPIRALKAIIETVITIILIRILYKILKK Prediction of potential genes in microbial genomes Time: Fri May 27 07:29:04 2011 Seq name: gi|289656170|gb|ADCS01000020.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.20, whole genome shotgun sequence Length of sequence - 53723 bp Number of predicted genes - 58, with homology - 57 Number of transcription units - 26, operones - 12 average op.length - 3.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 228 119 ## gi|299143664|ref|ZP_07036744.1| adenine-specific DNA methyltransferase + Prom 385 - 444 5.4 2 2 Tu 1 . + CDS 470 - 1039 576 ## GALLO_0244 ThiJ/PfpI family protein + Term 1077 - 1109 2.4 3 3 Tu 1 . - CDS 1062 - 1277 83 ## - Prom 1307 - 1366 9.4 + Prom 1063 - 1122 4.0 4 4 Tu 1 . + CDS 1165 - 1332 214 ## Smon_1038 putative RNA methylase + Term 1336 - 1368 -0.9 5 5 Tu 1 . - CDS 1368 - 2090 623 ## COG3022 Uncharacterized protein conserved in bacteria - Prom 2167 - 2226 3.4 + Prom 2126 - 2185 8.2 6 6 Op 1 7/0.000 + CDS 2217 - 4199 2531 ## COG0556 Helicase subunit of the DNA excision repair complex 7 6 Op 2 . + CDS 4210 - 7029 3033 ## COG0178 Excinuclease ATPase subunit 8 6 Op 3 . + CDS 7094 - 7876 790 ## COG1376 Uncharacterized protein conserved in bacteria + Term 7886 - 7926 3.4 + Prom 7920 - 7979 9.5 9 7 Tu 1 . + CDS 8003 - 9433 1663 ## COG2195 Di- and tripeptidases + Term 9437 - 9464 0.1 10 8 Tu 1 . - CDS 9444 - 10127 776 ## COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold - Prom 10160 - 10219 10.2 + Prom 10119 - 10178 7.2 11 9 Tu 1 . + CDS 10244 - 11458 1696 ## COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain + Term 11472 - 11521 14.0 - Term 11462 - 11507 12.6 12 10 Op 1 . - CDS 11511 - 12242 267 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 13 10 Op 2 1/0.000 - CDS 12251 - 13153 968 ## COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase 14 10 Op 3 . - CDS 13215 - 13784 173 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 15 10 Op 4 21/0.000 - CDS 13781 - 14527 561 ## COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component 16 10 Op 5 . - CDS 14502 - 15512 1403 ## COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components - Prom 15567 - 15626 8.4 + Prom 15484 - 15543 8.6 17 11 Tu 1 . + CDS 15643 - 16179 560 ## COG0194 Guanylate kinase + Term 16298 - 16331 4.0 + Prom 16419 - 16478 12.9 18 12 Op 1 8/0.000 + CDS 16561 - 18255 1494 ## COG4988 ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components 19 12 Op 2 . + CDS 18248 - 19900 177 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 20 12 Op 3 . + CDS 19913 - 20734 811 ## gi|299143682|ref|ZP_07036762.1| conserved hypothetical protein + Prom 20781 - 20840 14.2 21 13 Op 1 . + CDS 20876 - 22189 1574 ## COG0124 Histidyl-tRNA synthetase 22 13 Op 2 . + CDS 22191 - 22883 957 ## COG3382 Uncharacterized conserved protein + Prom 23091 - 23150 10.2 23 14 Op 1 41/0.000 + CDS 23171 - 23452 485 ## COG0234 Co-chaperonin GroES (HSP10) 24 14 Op 2 . + CDS 23468 - 25087 1623 ## PROTEIN SUPPORTED gi|167855908|ref|ZP_02478658.1| 50S ribosomal protein L28 + Term 25088 - 25132 10.5 - Term 25079 - 25120 5.1 25 15 Tu 1 . - CDS 25149 - 26498 1234 ## COG0534 Na+-driven multidrug efflux pump - Prom 26534 - 26593 8.4 + Prom 26548 - 26607 9.6 26 16 Tu 1 . + CDS 26670 - 27797 1256 ## gi|299143688|ref|ZP_07036768.1| hypothetical protein HMPREF0629_00541 + Term 27804 - 27838 5.5 - Term 27792 - 27826 5.5 27 17 Tu 1 . - CDS 27827 - 28723 874 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily - Prom 28750 - 28809 6.3 + Prom 28694 - 28753 10.5 28 18 Op 1 . + CDS 28801 - 29346 819 ## FMG_1306 hypothetical protein 29 18 Op 2 . + CDS 29358 - 30647 1738 ## COG1362 Aspartyl aminopeptidase + Term 30656 - 30706 10.1 - Term 30642 - 30693 1.0 30 19 Tu 1 . - CDS 30726 - 31301 494 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins - Prom 31341 - 31400 9.6 + Prom 31116 - 31175 6.1 31 20 Op 1 . + CDS 31400 - 31921 588 ## COG0778 Nitroreductase 32 20 Op 2 12/0.000 + CDS 31899 - 32378 502 ## COG0802 Predicted ATPase or kinase 33 20 Op 3 20/0.000 + CDS 32375 - 33055 214 ## PROTEIN SUPPORTED gi|238855674|ref|ZP_04645973.1| ribosomal protein ala-acetyltransferase 34 20 Op 4 9/0.000 + CDS 33052 - 33486 202 ## PROTEIN SUPPORTED gi|229230989|ref|ZP_04355502.1| (SSU ribosomal protein S18P)-alanine acetyltransferase 35 20 Op 5 . + CDS 33488 - 34483 775 ## PROTEIN SUPPORTED gi|229232313|ref|ZP_04356740.1| (SSU ribosomal protein S18P)-alanine acetyltransferase 36 20 Op 6 . + CDS 34516 - 35685 1572 ## COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family + Prom 35689 - 35748 3.2 37 21 Op 1 . + CDS 35770 - 36564 567 ## gi|299143697|ref|ZP_07036777.1| hypothetical protein HMPREF0629_00551 38 21 Op 2 . + CDS 36573 - 38114 1518 ## COG2509 Uncharacterized FAD-dependent dehydrogenases 39 21 Op 3 . + CDS 38116 - 38595 543 ## COG0219 Predicted rRNA methylase (SpoU class) + Prom 38599 - 38658 6.6 40 22 Op 1 . + CDS 38728 - 38877 200 ## PROTEIN SUPPORTED gi|227499796|ref|ZP_03929891.1| ribosomal protein L33 41 22 Op 2 . + CDS 38897 - 39109 281 ## gi|299143701|ref|ZP_07036781.1| preprotein translocase, SecE subunit 42 22 Op 3 45/0.000 + CDS 39124 - 39678 722 ## COG0250 Transcription antiterminator 43 22 Op 4 55/0.000 + CDS 39743 - 40168 596 ## PROTEIN SUPPORTED gi|126697628|ref|YP_001086525.1| 50S ribosomal protein L11 44 22 Op 5 . + CDS 40209 - 40910 878 ## PROTEIN SUPPORTED gi|169338094|ref|ZP_02622460.2| ribosomal protein L1 + Term 40919 - 40956 5.7 + Prom 41250 - 41309 4.0 45 23 Op 1 23/0.000 + CDS 41342 - 42151 1022 ## COG0725 ABC-type molybdate transport system, periplasmic component 46 23 Op 2 6/0.000 + CDS 42156 - 42827 694 ## COG4149 ABC-type molybdate transport system, permease component 47 23 Op 3 . + CDS 42830 - 43876 1137 ## COG1118 ABC-type sulfate/molybdate transport systems, ATPase component 48 23 Op 4 6/0.000 + CDS 43904 - 44839 1062 ## COG2896 Molybdenum cofactor biosynthesis enzyme 49 23 Op 5 1/0.000 + CDS 44841 - 45323 581 ## COG0315 Molybdenum cofactor biosynthesis enzyme 50 23 Op 6 . + CDS 45320 - 45751 535 ## COG2258 Uncharacterized protein conserved in bacteria 51 23 Op 7 3/0.000 + CDS 45761 - 46738 939 ## COG0303 Molybdopterin biosynthesis enzyme 52 23 Op 8 . + CDS 46740 - 47246 224 ## PROTEIN SUPPORTED gi|134277849|ref|ZP_01764564.1| ribosomal protein S16 + Prom 47255 - 47314 7.5 53 24 Tu 1 . + CDS 47352 - 47696 530 ## gi|299143711|ref|ZP_07036791.1| conserved hypothetical protein + Term 47708 - 47752 6.2 + Prom 47708 - 47767 9.6 54 25 Op 1 . + CDS 47843 - 49180 1476 ## COG3579 Aminopeptidase C 55 25 Op 2 . + CDS 49182 - 49466 269 ## CKR_1663 hypothetical protein + Term 49475 - 49514 6.1 + Prom 49502 - 49561 5.7 56 26 Op 1 . + CDS 49634 - 51700 2054 ## COG1566 Multidrug resistance efflux pump 57 26 Op 2 36/0.000 + CDS 51702 - 52385 293 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 58 26 Op 3 . + CDS 52382 - 53659 365 ## PROTEIN SUPPORTED gi|163788031|ref|ZP_02182477.1| 50S ribosomal protein L9 Predicted protein(s) >gi|289656170|gb|ADCS01000020.1| GENE 1 1 - 228 119 75 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299143664|ref|ZP_07036744.1| ## NR: gi|299143664|ref|ZP_07036744.1| adenine-specific DNA methyltransferase [Peptoniphilus sp. oral taxon 386 str. F0131] # 14 75 1 62 62 108 98.0 8e-23 SFYELINICVIISLGYIKEIRPFLRWEGKKRQLLKYISLYYPFDGNITEYAEMQVIKMRQ INSLKYAYFKPFNEI >gi|289656170|gb|ADCS01000020.1| GENE 2 470 - 1039 576 189 aa, chain + ## HITS:1 COG:no KEGG:GALLO_0244 NR:ns ## KEGG: GALLO_0244 # Name: not_defined # Def: ThiJ/PfpI family protein # Organism: S.gallolyticus # Pathway: not_defined # 1 180 1 171 204 85 35.0 1e-15 MKKTAVLIYDSFCNFEFSVALESLSLSGKQITVFSKIKEPIQSEEGLIMQAEKTIYELNI DEFDSLLLTGATDIRNTIEDESIIEFIKNFDGKIIGAISIAPILLLKAGMLNEKSFMAGV NKEDLLEEGFDETDLSNMVGWNDNLQNPVVDGYIIDDNIITSISYNFVKFGLAFSKMLGL NISSKTFGI >gi|289656170|gb|ADCS01000020.1| GENE 3 1062 - 1277 83 71 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLLVFQKPVALQLCCSFIISSFNLKPSFSKIFITSNDIGIMCPFYSICQYLTFLILGIKK APTNSKCLKIT >gi|289656170|gb|ADCS01000020.1| GENE 4 1165 - 1332 214 55 aa, chain + ## HITS:1 COG:no KEGG:Smon_1038 NR:ns ## KEGG: Smon_1038 # Name: not_defined # Def: putative RNA methylase # Organism: S.moniliformis # Pathway: not_defined # 1 55 195 249 249 105 94.0 5e-22 MSFEVMKIFEKEGFKLKELIIKEQHNCRATGFWKTNSIKYNFLLIAHEYLFIFKK >gi|289656170|gb|ADCS01000020.1| GENE 5 1368 - 2090 623 240 aa, chain - ## HITS:1 COG:SP1547 KEGG:ns NR:ns ## COG: SP1547 COG3022 # Protein_GI_number: 15901390 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 5 237 3 240 242 93 27.0 3e-19 MKNIIIMSPSKEMIELSKNFNISLKDETKTILNSLKKLNIEEIEKYFKISTALATLNYNR FHSIETSCGNIALKTYNGIAFKNMNLKNFTDEDFEFAYKNLIILSALYGPIFSKEIISPY RLDFNVPIKIDNLSLKNFWENYYNNFFKDYSIYNLASYEFSSFINKEISNFIDIEFFEDF EKNKHAHSTTVKKLRGALAAEIIKNKSFEKEIFKNFSYLEFRLSEEYSNTNRIVYVKSNL >gi|289656170|gb|ADCS01000020.1| GENE 6 2217 - 4199 2531 660 aa, chain + ## HITS:1 COG:BH3595 KEGG:ns NR:ns ## COG: BH3595 COG0556 # Protein_GI_number: 15616157 # Func_class: L Replication, recombination and repair # Function: Helicase subunit of the DNA excision repair complex # Organism: Bacillus halodurans # 3 653 5 659 660 884 70.0 0 MEFKIHSSYVPTGDQPQAIDGLVDGINKNLKHQTLLGVTGSGKTFTMANVIERVQKPTLV IAHNKTLAYQLASEFKEFFPDNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINDEIDKL RHSATMSLFERRDVIIVASVSCIYGLGDPIDYENLVVSLRPGMEKDRNEIMKRLIEIQYV RNDLNFVRGTFRVRGDILEIFPSWSSENSIRVEFFGDEIDRISEINALTGEVLGYRKHVA IYPASHFATTEQKVKRAIVTIEEELNERVKELKDQEKLLEAQRIEQRTRYDIEMLSEMGF CSGIENYSRHLSAREAGSRPYTLIDYFPKDFLTIIDESHATVPQIRAMYNGDRSRKQTLV DYGFRLPSALDNRPLKFEEFESIMNQCIYVSATPGPYEKEHEQNKVEQIIRPTGLLDPVI EVRPTKYQIDDLINEIENVKERGERVLITTLTKKMAEDLTDHFKKIGMKVTYMHSDVDTI ERMEIIRDLRLGKYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTAGRAA RNVDGKVIMYADFETKSMKYTIDETNRRRFIQDKYNKENGIIPKSVEKGIREVIEATVAA EGVESYSSINEFSDKEILAMIDALKNEMYKSAEQLDFERAAEIRDKITELRAEMEKMKDN >gi|289656170|gb|ADCS01000020.1| GENE 7 4210 - 7029 3033 939 aa, chain + ## HITS:1 COG:BH3594 KEGG:ns NR:ns ## COG: BH3594 COG0178 # Protein_GI_number: 15616156 # Func_class: L Replication, recombination and repair # Function: Excinuclease ATPase subunit # Organism: Bacillus halodurans # 1 938 1 938 957 1229 63.0 0 MSEENIVIKGAHQHNLKNVDLTIPRNKFIVFTGLSGSGKSSLAFDTIYAEGQRRYVESLS SYARQFLGQMDKPEVDYIEGMSPSISIDQKTTSKNPRSTVGTVTEIYDYFRLLYARVGHP YCPKCGKEISSFTVDQMVDRVMTLEDRTKIQVLAPVVRRRKGTHKRTLENIKKDGFIRVI VDGEIKDISEEDIELEKNKVHDIEIVVDRIVIKDGVESRLADSIELALGLSEGMVNIDVV GGEKITFSSKLACPDCGIVIEEISPRSFSFNSPIGACETCKGIGFSKEVDPELVIPNREL SIDEGAIVCYSGAEGTYYTEMVKQLAKEFNFSTSKPIKEAPEEFMNALLYGTEREIEFDF DSHFSGAKTYRGNFEGILKNLKRRYMETSSDFIIGKIEEFMNEEPCPHCHGARLKESSLS VKVNGLNIFELTELSVSDAVKFFEELKLTEKESIIANQILKEIKARLSFLQNVGLEYLTL SRMAGTLSGGEAQRIRLATQIGSQLVGVIYVLDEPSIGLHQRDNEKLLKALRNLTDIGNT LIVVEHDEDTMRMADQIVDIGPLAGRDGGRIVAQGSADEIMQVEESITGAYLSGRKKIEL PEQRRPYTGKSIKIYGARENNLKNINVEIPLGQFVAVTGVSGSGKSSLINEILYKSLTQN LNGSRVKPGKHTKIEGIENLDKVVNIDQSPIGRTPRSNPATYTGAFDLIRDIFTMTNESK IRGYKKGRFSFNVKGGRCEACKGDGIIKVEMHFLPDVYVPCEVCKGKRYNRETLQVKYRD KNISDILDMTVEEALVYFENHPRVLRKIETLRDVGLSYIKLGQPSTQLSGGEAQRIKLAT ELSKKATGRTIYILDEPTTGLHSEDIRKLLKVLNELVNRGNTVVVIEHNLDVIKTADHII DIGPEGGNNGGTIIATGRPEEIADIEKSYTGQFLKKILL >gi|289656170|gb|ADCS01000020.1| GENE 8 7094 - 7876 790 260 aa, chain + ## HITS:1 COG:all3278 KEGG:ns NR:ns ## COG: all3278 COG1376 # Protein_GI_number: 17230770 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Nostoc sp. PCC 7120 # 88 211 148 268 272 73 33.0 4e-13 MKIKNSFGLIVLSALMLFPTSVRAEYVRPNHFMDKSGAEKVAEIKKFQALSNLTVTGKIN DITKKVLYNSNMVVKDDIQNAPTSGEWIVVNKTKKTLTFYSGTAPMYKFPIALGTNETPT PSAKGKIQSKHVNPAWGGMNGKYKPAKADDPNNPLGERWMGLSLPGYSGYGIHGTIKPHQ IGTYASNGCMRMFNYDIETFIFPRARVGMPVWIGTDEELASWGVRQIVEEKKDNSVAPIN TPVNSEPVEENYTVDELLVF >gi|289656170|gb|ADCS01000020.1| GENE 9 8003 - 9433 1663 476 aa, chain + ## HITS:1 COG:FN1277 KEGG:ns NR:ns ## COG: FN1277 COG2195 # Protein_GI_number: 19704612 # Func_class: E Amino acid transport and metabolism # Function: Di- and tripeptidases # Organism: Fusobacterium nucleatum # 3 476 6 486 486 382 44.0 1e-106 MNLNIEPKEVFKWFYEINQIPRCSGSEKRVSDFLVNFAKERNLEVFQDDVYNVIIKKPAT NGYENSKPVIIQGHMDMVCVKEEDSDHNFDTDPIEMIVDGDFVKANKTTLGADDGIAVAY ALAILDSNEYKHPALEVLITTNEETGMDGAAALKEGMLNGNMLLNIDSEEEGIFLVSCAG GSSINVIFDIEREHFKGEALRITVRGLKGGHSGGEIIRQRANANKILSRLLSAVREVTEL RIISLKGGAKHNAIPDSAKAEILVEEKELAIDTIEKLAVAIKNEYRVEDDGIVIDIESCE NRDSYTKKLTDDFIDYSMIVPDGVISMSKDIEGLVETSLNNAVLFEKDNKIVYTTSVRSS TESELERVLDVLKISAKRCNAKTIESNRYPAWQFEEESILRDISIKTYEELFCSKATYSA IHAGLECGLLKKVLPNCDMISFGPEMHDVHSPKERVSISSTERMWKFTLKLLENLK >gi|289656170|gb|ADCS01000020.1| GENE 10 9444 - 10127 776 227 aa, chain - ## HITS:1 COG:FN1387 KEGG:ns NR:ns ## COG: FN1387 COG2220 # Protein_GI_number: 19704722 # Func_class: R General function prediction only # Function: Predicted Zn-dependent hydrolases of the beta-lactamase fold # Organism: Fusobacterium nucleatum # 3 220 2 237 237 95 30.0 6e-20 MKITFIRHSCYTVETDNYFLIFDYIGGKLQLPENKISIFFVSHRHSDHFKKEIFNFNADH YIISDDVDIKKAENITSVSPDNELDLLGIKVKTHGSTDEGVSFYVNVDGTGIVHCGDLNY WIWPEYSKSDIENMDRWFKSEADKFKNENVFAIMLPVDPRLKDNYYLTCDYFLRTNSAKH YFPMHMWENYSISQKLKNKYKNIYPQKIIHVIQKENQIFEFQIKKEW >gi|289656170|gb|ADCS01000020.1| GENE 11 10244 - 11458 1696 404 aa, chain + ## HITS:1 COG:CAC0463 KEGG:ns NR:ns ## COG: CAC0463 COG0265 # Protein_GI_number: 15893754 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain # Organism: Clostridium acetobutylicum # 50 390 16 343 348 201 39.0 3e-51 MENETLYQEQKYEYNYENENNRRRKKKSNKSVIVLAIVFSLIGGIVGSSITYALFGEKMS SETNLASANGNNAVTISTKGEVNVAQAVAQKAIPSVVGITTKGQVNSMFGAVEAKGTGSG IIVDERGYILTNAHVVKVGSQVVDTATVLLDDGTTLEGKPIWVDSNIDIAIVKIEPKGKL TAATLGDSSTLQIGQTAIAIGNPIDIAYQRSVTQGIISGLNRYVGQVNGGGYMTGLIQTD ASINGGNSGGPLLNEKGEVIGINTVKVNSAEGLGFSIPINTVKPIIEQVINTGTYNIVFM GIENPVNAVDVQRYLNKDLGVDKGVFVFAVRENSPAKQAGIEAGDVITKIGDTEIENESS LRVALYKYKVGDREKITIVRDGKEKQVEIEFGEYLKDTENIEGK >gi|289656170|gb|ADCS01000020.1| GENE 12 11511 - 12242 267 243 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 2 243 4 242 242 107 32 1e-22 MKTVLITGASRGIGSAIAKRLSLENYNLVLNYNNSEKSALSLRDEIRITNKNCIAIKADV SKLEEVQNMYSEIEKTFGSVDILINNAGISFTGQFQDTSPDIWNKILNTNVTGMYNTIYT VLPKMLSNHEGVILNFSSIWGSHGASCEVAYSTSKGAVESLTKSLAVELAPSNIRVNAIS PGTVNTDMMKSYSADDMKIICNEIPMQRISQPEEIAELVCFLISYKNSYMTGQIICADGG MCV >gi|289656170|gb|ADCS01000020.1| GENE 13 12251 - 13153 968 300 aa, chain - ## HITS:1 COG:BH1953 KEGG:ns NR:ns ## COG: BH1953 COG1597 # Protein_GI_number: 15614516 # Func_class: I Lipid transport and metabolism; R General function prediction only # Function: Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase # Organism: Bacillus halodurans # 63 278 57 276 295 91 28.0 2e-18 MNKILFILSTKAGSSDFKSFKENIINTYTKHNMLENLKIVETLDKEHAKRATQEFIELPY ENKIIYSCGGDGTLNEVASVVYGSNTALGLIPMGTGNDFSKNFDYSNFKIEQTINPKISP IDIISINDRISVNVMSLGFDTSVLRNVYMILKKYPFFKKHSFMLGAIYSLLNIESDTLNV ELNLANGKSLVLNDTYTITALCNGRYYGSGFNPSPNSILDDGILELLLVKKLSLLKILKL LPKYKKGTHLNNKKVAIYEVTSGKICSENEIYANCDGEIFKSKYFNFKVLKNSILWANLK >gi|289656170|gb|ADCS01000020.1| GENE 14 13215 - 13784 173 189 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 3 187 2 210 245 71 27 1e-11 MKLEVENLTKYFDDKLIFKNVTFSVKDSERLAIIGKSGSGKTTLIKIIMGLTNSNSGKII FDTPPEFSVVFQENLLFEERTVYENLIFCCEIDKTTALKLLSELELEDYINTKVKALSGG MKRRIAILRAIVKRGNIFIFDEAIREVDGYTANLIISFLNKRLKNAPLIYITHDESEIEK LNFDKIIKL >gi|289656170|gb|ADCS01000020.1| GENE 15 13781 - 14527 561 248 aa, chain - ## HITS:1 COG:AGl927 KEGG:ns NR:ns ## COG: AGl927 COG0600 # Protein_GI_number: 15890580 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type nitrate/sulfonate/bicarbonate transport system, permease component # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 55 244 63 252 269 64 25.0 2e-10 MKTSTMKNKIKSFLIVLFWIFVWQILSLLIPEEILFVSPLKVIPQIIKILTDKVFYVSLF ASISKITTGFLIGVFFATILSIISYKNTLFKELSVPLMMFLKSVPVVSFIVLALFFVSSK YLSIIISMIIATPIVYSNLIEGLISIDENYLDMAKIFDVSFNRKLNYIYLSHLKPFIISG LSLAFGMAWKSGLAAEVISLPNFGIGTLIYNCKIYLDTVNLFAYTIIAMIVCHVLEKLLL FLIRRICK >gi|289656170|gb|ADCS01000020.1| GENE 16 14502 - 15512 1403 336 aa, chain - ## HITS:1 COG:TM0202 KEGG:ns NR:ns ## COG: TM0202 COG0715 # Protein_GI_number: 15642975 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components # Organism: Thermotoga maritima # 79 335 48 300 300 80 25.0 3e-15 MKKKILSIFIMLVLTFGIIGCGKTSSENNSEKNSPAPQTAESAEIKIAALKGPTSMGLAK LFDDAKNDVEQKNSYTCTILQSPDEVVVGLSKGDFDVAAIPANLASVLYNKTEGKLLKVA NINTLGVLYIASKDDSIKSVEDLRGKTIITSGKGATPEFVLRHVLSKHNINPDTDVTIDF KTEHQEVVSSYMLRSDNSAVVMLPQPFLTVAEGLVTNLSLNDLWQEVNDSKLVTGVLVVR NEFLNSHKEAFDNFMEEYKSSVEFVNSNTDEASKIIAALDIVPEPIAKTALPQCNIVYID GAEMKETLSNYLQSLYDEDAKSVGGNMPDENFYYEK >gi|289656170|gb|ADCS01000020.1| GENE 17 15643 - 16179 560 178 aa, chain + ## HITS:1 COG:alr0106 KEGG:ns NR:ns ## COG: alr0106 COG0194 # Protein_GI_number: 17227602 # Func_class: F Nucleotide transport and metabolism # Function: Guanylate kinase # Organism: Nostoc sp. PCC 7120 # 2 152 22 175 199 82 34.0 6e-16 MIYLIAGNSGSGKSTQANILNKRDNFYRIITYTTRAPRVGEKNAIDYFFVDKYEFKRLDD EEYFVGITEYAGNFYGIPKLQLEKYVSSKKNVVLVIDLFGVIEIKNTLKNTICIYLKLSK EEMIKRMEIRGDLPQKIKNRVENAQDFSPYADYILDGSKNVEEIAKEIDDIVEENSKI >gi|289656170|gb|ADCS01000020.1| GENE 18 16561 - 18255 1494 564 aa, chain + ## HITS:1 COG:PM1474 KEGG:ns NR:ns ## COG: PM1474 COG4988 # Protein_GI_number: 15603339 # Func_class: C Energy production and conversion; O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components # Organism: Pasteurella multocida # 12 563 12 556 561 392 37.0 1e-109 MMDKERKYVIYIVILKLFSLCLNIFMIYSVANFIEKMFLNKNILFFTIGSLIVVILLQAL IINLISKYSNNISINIKEKIRTILFDKIYSYGMKYSTKFNVAEVVQLSVNGVENLEVYFN SFIPQLIYSMLSPIILFIFIGRINLKIAVALFLMIPLIPIAIIMVQKIAKKINAKQWKSY VDLSEVFVDFLEGLVTLIIFNADDGYNKKLNKYAEDFRKNTMRVLGVQLNNITVLDVIAY GGAVLGIILTVFYYSNATINLRDAIIIILLSSEFFLPLRLLGSFFHIAMNGMGVVDHLFR VLDMPDVKDGSGKITDEDYNVELKGINFSYNEERTILKNIDMNFGKDKITYIVGESGCGK STIANLIINKVTPFTGEVLYNNTDNVSEEEILKNCTLVTNNPYLFKGTLRYNLQMGNKDI TDDEMWYVLEKFSLKEYFEHENGLDTLIFENGSNFSGGQRQRIAIARAILKKSPIYIFDE ATSNIDSESEEIIMKFLDTFRKNKLIILISHRLKYTINSDYIYYMKDGAVEEKGSYNELI SINGEFKKLYDNQMALENWGIKYE >gi|289656170|gb|ADCS01000020.1| GENE 19 18248 - 19900 177 550 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 339 542 2 209 245 72 27 4e-12 MSKIREYTQLVKKLIVLVSPLKLFMILAILFGSIGHIIATLIPVIGGYALIKAMIGKFYF FKLITILVIFALLRSVLRYLEQLCNHFVAFRVLEIIRDRVFKALRRLAPAKMENTNTGEL ITIITSDIELLEVFYAHTISPISIAFIHTLFLTILMFKINVLYAVVLVIFHLIMAIIVPI ITSNRAKSIGDIQRKNLSDINSSIIDTFYGIEESAQYQFGGERRNEMLEYTKKLSRSATR LSRIYGGNMALSNSVILIGNICILISAMYLYKFGYVNKIEVVVPIIAFMSSFGPVSALSN LANNLVTTFACGKRVMSLLEEVPEVEEVVNGKDINFEEIDVSKVSFSYGSEEVLKNFDLA VKKGEILGLKGKSGCGKSTLLKLIMRFYDVDSGKIEENKINIKEINTKTLRKNHCYITQS THLFNGTILDNLKIAKEDATMEEIKAACRKASIGEFIEELPNGYNTKVGDIENSLSTGEK QRISVARGFIQNGDLLLLDEPTANIDSLNEGIILKSIWEESKDKAVILASHKDSTLRISD RIKQVKTLAE >gi|289656170|gb|ADCS01000020.1| GENE 20 19913 - 20734 811 273 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299143682|ref|ZP_07036762.1| ## NR: gi|299143682|ref|ZP_07036762.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 273 1 273 273 445 100.0 1e-123 MKFTNMEKLYLLHLIENKNQNTITSVASAFNCTKPNSKKILDKMLNDGVLCKEENRYMLT KKGNDFAEKFNKNRINIEKFLNILLNLEEDKIKELSYKLMGNELDILNEILAEKSKKMLK FKSTNVDYNELINILGGGEYNAYLSIDKIEDELKNSSIETSMAMMGFESNVRIVVGEESY ILLTPKEVKKASDGFIRSGFVMDISYFKNGVEEDVVYNEKNFLIPLYVFKNWKLINKKIL YSSSYLKISSKIGFSKNHNKKAIFNIFIDLVNL >gi|289656170|gb|ADCS01000020.1| GENE 21 20876 - 22189 1574 437 aa, chain + ## HITS:1 COG:CAC2740 KEGG:ns NR:ns ## COG: CAC2740 COG0124 # Protein_GI_number: 15895997 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Histidyl-tRNA synthetase # Organism: Clostridium acetobutylicum # 1 430 1 430 430 390 47.0 1e-108 MAQIVKPSTLPGFMELLPKEQILFNEMMDTIRKNFEKHGFLPIDTPAIEKSEVLLAKGGG ETEKQIYRFTKGDTDMSLRFDLTVPLARYTVEHFNDLSFPFRRYHIGKVYRGEKAQKGRF REFYQCDIDTIGNEKLDILNDAEFPVVIYHTFKDLGFDDFTIRINNRKILKGFFESLNIL DSVDVLRAVDKIDKIGREKVKEELCDNGIEEDIAVKIIDFILISGTNSEIFDALDRLEID NEIFNEGLSELKQVVKYITEFAVPEKNFTVDLKIARGLDYYTGTVYETTLDNYSNVGSVC SGGRFDNLASYYTDKKLPGVGLSIGLSRLFYQLNEAKIIEAKKKSLIDLIVIPMTGFVDE AIKLVSKLRDGGINTIIYTEDAKIAKKFKYANALEVPYTLVVGENEVKTEKYALKDMVTG NQEELSLSEIISRIKEN >gi|289656170|gb|ADCS01000020.1| GENE 22 22191 - 22883 957 230 aa, chain + ## HITS:1 COG:CAP0113 KEGG:ns NR:ns ## COG: CAP0113 COG3382 # Protein_GI_number: 15004816 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Clostridium acetobutylicum # 35 219 36 222 235 84 31.0 2e-16 MKFIVDEKIRSVLGVDAIVGALLENVNLNAALPLKYEDEIKYLTDRALDVTEQMLEENEV LEGYREKIRAIGRSLKRYPPSAEALINNIKRRGAMPRINSLIDLYNMGSLKSMLSIGAHD ADSFKGAIRFTFTDKTESFVPVGGGTKPVHEGDFVYRDDEKIAAYLDARDAEDFKIVEDT KNVLLIIQGNQNTSTEMRMKVLDEICKSIKEVCGGSYKIFAAPAGEETEI >gi|289656170|gb|ADCS01000020.1| GENE 23 23171 - 23452 485 93 aa, chain + ## HITS:1 COG:RP627 KEGG:ns NR:ns ## COG: RP627 COG0234 # Protein_GI_number: 15604474 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Co-chaperonin GroES (HSP10) # Organism: Rickettsia prowazekii # 1 92 1 94 95 75 42.0 3e-14 MNLKPLDDKLVIKKVEKEETTKSGIVLPSSAKEESNIAEIVAIGKAILDDEKRCDEVHVG DKVVFSKYAGSEIEVEKEKYTIVKYTDILAVLK >gi|289656170|gb|ADCS01000020.1| GENE 24 23468 - 25087 1623 539 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167855908|ref|ZP_02478658.1| 50S ribosomal protein L28 [Haemophilus parasuis 29755] # 2 539 3 540 547 629 59 1e-180 MAKEIKFSEDARSGLINGINKLANTVKVTLGPKGRNVILDKEYGAPLITNDGVTIAREIE CEDKFENMGAQLLKEVATKTNDVAGDGTTTATLLAQAIILEGMKNLAAGANPMILQKGIK KAVDKAVEEIKAFSKPVETKESIAQVATISAADEEVGHLIAEAMEKVGKDGVITVEESKS MGTSLDVVEGMQFDRGYVSPYMVTDNEKMVAELESPYILITDKKITNIQDLLPLLEQVLQ AGKPLLVVAEDIEGEALATLVLNKLRGTINVVGIKAPGYGDRRKEMLQDIAILTGGKVIS SDLGQDLKDATVEMLGSASKVRVEKDLTVIVNGNGSKDELDARISQIKSQIEATDSDFDR EKLQERLAKLSGGVAVIQVGAATEVELKERKLRIEDALSATRAAVEEGIVPGGGTVLLDC IDSVAKLLENADGDERTGMNIILKALEAPVRQIAVNAGLEGSVIVERVKELEVGMGYDAL KGDYVNMIDSGIVDPTKVTRSALQNAASVAAMILTTEAAVAVIPKEEPQMPMNPGMGMM >gi|289656170|gb|ADCS01000020.1| GENE 25 25149 - 26498 1234 449 aa, chain - ## HITS:1 COG:BB0473 KEGG:ns NR:ns ## COG: BB0473 COG0534 # Protein_GI_number: 15594818 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Borrelia burgdorferi # 4 444 14 444 454 145 26.0 1e-34 MHNNKQIFNKLVQLSIPTMAAMLLQSIYDIVDMYWVGKISSQAISAVTLFSTILWLFEVL NEIIGVSSVSMISQSVGRNDIEMKEKICEQTLSFKFLMGILTSILLFIFIKPLLHFYTPD KTVIDIALSYGYLRIFFIPIMFSSFSVNSIFRCTGDPKTPMKIMGFCAILNMILDPIFMF EKVPFINITGFNLGTFGAAVATVISTSVSFLIGFFILLKGNNYIKIKFKNLFRLIPNIDY KLITVGIPGAFESFLTFLFEAARVKFVASYGLIPLTAAGISSKIYGVSMLPMMGLLMGGS VLVGNFLGEENIDAAEETSKTAAKFNAIILFVFTLICFIFSKKLISIFTNDIDVINMGAI FLLASAMCISFLGYGLGRATVFMGSGYNTPLLISSLVSQWILQMPLIILCRKLNLPVQYL WYTYIPSDFLFFVMIMVYHKQGKWKNKRV >gi|289656170|gb|ADCS01000020.1| GENE 26 26670 - 27797 1256 375 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299143688|ref|ZP_07036768.1| ## NR: gi|299143688|ref|ZP_07036768.1| hypothetical protein HMPREF0629_00541 [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 375 1 375 375 657 100.0 0 MKSIKKIYSLVIAFVLLIAFAPKVSAQGTYVGLPRFNVTLNGVSVDNSYARYPLIVYKDI TYFPMTYNTTRFLGVETNWSEYSGLQINQTGINGKFDFYQTNRKNADVYPVTVPNFKITV NGKTIVNRNEEYPLLVFRDVTYFPMTWRFCVNEFGWKYNFTHQKGLVITSNNNSGGSVPT PKPPENPIDNYKDYSSTIYYNLNYYVIKTNGTNYRLFRESSINKDVKMLSDLEVKSFYQD GNKLYFTSGNSFYSYDMDKGTFDTVISNSNVKDGKIVSNGSQVFYVSASNGELYSKNNVN LNPGAKVETLEKKGNYVLSTFTYDLGVKYKLIVFDKNGMAIYKTEDQTQNAKIEGSNLTY FNVNTMKNETISLNK >gi|289656170|gb|ADCS01000020.1| GENE 27 27827 - 28723 874 298 aa, chain - ## HITS:1 COG:SP1447 KEGG:ns NR:ns ## COG: SP1447 COG0697 # Protein_GI_number: 15901297 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Streptococcus pneumoniae TIGR4 # 9 296 5 291 298 185 40.0 8e-47 MQKNSKIMLRGYIMTIIGATFWGFSGTCGQYLMSTKGLDAKIIVNTRLIFAGLILILLSL YKNKTETFKIFKNKKDTLTLIAFGIFGMLFCQFSYLITISKTNAPTATVLQFLSSIFIVV GVCIKEMRAPKIKEISSIVLALLGTVVLATHLDLSTLVISSSGLFWGILAAFSVVIYTLL PINILKKYSSSVVTGFGMFIGGIVITFLLQPWKFSVNFDMMTILGLIAMIVFGTVLAFNC FLTGVSIIGPVRGSLIAGLEAVSSLLFSIILLKESFMMIDLFGMLLILMAVTVLSFNK >gi|289656170|gb|ADCS01000020.1| GENE 28 28801 - 29346 819 181 aa, chain + ## HITS:1 COG:no KEGG:FMG_1306 NR:ns ## KEGG: FMG_1306 # Name: not_defined # Def: hypothetical protein # Organism: F.magna # Pathway: not_defined # 1 179 1 175 179 62 25.0 1e-08 MDKRMLVYGFDVQSERFLKLIEIANNLGIETETVKHDDIDKKVGILMGVEVDDTEYNSSC DEIGEIEFLLFSDFEREVLGKFTFEIKQEGIIIPHKAVITPTSKNWSFRYLISHIKDEHK IVNKYNELGRLIKKAQERFEKENDVDLKEEIDFALSIRELKDISEKDIDERYNRLSKVIF K >gi|289656170|gb|ADCS01000020.1| GENE 29 29358 - 30647 1738 429 aa, chain + ## HITS:1 COG:CAC0607 KEGG:ns NR:ns ## COG: CAC0607 COG1362 # Protein_GI_number: 15893896 # Func_class: E Amino acid transport and metabolism # Function: Aspartyl aminopeptidase # Organism: Clostridium acetobutylicum # 2 428 3 431 433 451 50.0 1e-126 MDAVKISKELIEFIDNSPCSYFAVRNMAGLLEKFGFKKLECKDNWELKKGDKCYITNNDS SIIAFTIGSNDVEKTGFKIVGSHSDSPGFRIKNNAQMKFENNLKLNTEVYGGAILSTWFD RPLSIAGRVVLKSDNLLNPKIELVKIDRDLLIIPSLAIHMNRDINKGFEFNPQTHTLPLM GLANEEIKEDMLVDLLAKELSVSTDDITDYDLYLYDRNGGKILGLNNEFVSVGRLDNLAM AYISLKALMDTDSGSGVNVMVCTDNEEVGSSSRQGADSPMVENTLERIAIGLGKNREEFF RAIDLSYIISADMAHAVHLNFGEKADPTNRPLLGGGPVIKYAANKAYTSDAVSASIFKGL CDRAEVPCQSFYNRSDMRGGSTIGPITQNHINIKSVDIGNPMLSMHSVRELCAVDDNLYL YKVFLELYK >gi|289656170|gb|ADCS01000020.1| GENE 30 30726 - 31301 494 191 aa, chain - ## HITS:1 COG:SA0373 KEGG:ns NR:ns ## COG: SA0373 COG0503 # Protein_GI_number: 15926089 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Staphylococcus aureus N315 # 1 189 1 188 192 160 46.0 2e-39 MKLLEEKIIKDGYILDENIIKVDSFLNHQLDIKFLSQLSDEIYEHFKDRNINKILTIEAS GIALATVLSQKFNYIPVVFAKKQHHKNLGDKVYQEEVKSFTTDKKYSVTVSKKFLSEKDN LLIIDDFLAEGNSLNGLIKISQQSGAKIIGLSVAIEKGFQDGGKLIRKLGYDLFSLAIIT DIKDNKFTFKK >gi|289656170|gb|ADCS01000020.1| GENE 31 31400 - 31921 588 173 aa, chain + ## HITS:1 COG:CAC3555 KEGG:ns NR:ns ## COG: CAC3555 COG0778 # Protein_GI_number: 15896791 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Clostridium acetobutylicum # 4 173 3 172 174 112 36.0 4e-25 MFKELVEKRRSIRKYKSDRIKQEELKIILESALKSPTGKNLDSLQFILIEDEKILDELSH FKSHGAGFLKGAKAAIAVLTDKELASVTYNQDACIAATVIQFQAEDLDIGSCWANVRGAT NDEGRISEDVIREALEIPAKYNVECIIGLGYKAEIPSEKRKKEFESHVHYEKF >gi|289656170|gb|ADCS01000020.1| GENE 32 31899 - 32378 502 159 aa, chain + ## HITS:1 COG:CAC2838 KEGG:ns NR:ns ## COG: CAC2838 COG0802 # Protein_GI_number: 15896093 # Func_class: R General function prediction only # Function: Predicted ATPase or kinase # Organism: Clostridium acetobutylicum # 11 150 1 143 152 149 50.0 2e-36 MYIMKNFEGRMELILNNLEETKKFGEKLGSLLKKGDVVCLNGDLAAGKTTLTKSIGIGMG IDDYITSPTFTIVNEYYGKLNLYHFDTYRLEGDNDVYYLGFDEYFYGDGVCVVEWADRIS SSLPECYLELNITQLDENKRKIEINAVGDRAKELMEDLR >gi|289656170|gb|ADCS01000020.1| GENE 33 32375 - 33055 214 226 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|238855674|ref|ZP_04645973.1| ribosomal protein ala-acetyltransferase [Lactobacillus jensenii 269-3] # 42 222 1 185 380 87 29 2e-16 MISLGIDTSTFKTSVGLVEDDREIASYELSANMYNSEEVVNMISEIFSKINFSIKDIDLI SVGIGPGSFTGTRIAVTIARTLSQTLNKEIVGVSSLKAVAMTYEGSEFIVPLIDAKRNRA YFGIYKNSDVIRTVKDDRLMDIDEIANELSGKAVVILGAGAEFFYDKLKDKMNLKMPKER LIRGANVARLGIIEYRERGSDNLFDVLPNYINLSQAEENFKKLKQI >gi|289656170|gb|ADCS01000020.1| GENE 34 33052 - 33486 202 144 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229230989|ref|ZP_04355502.1| (SSU ribosomal protein S18P)-alanine acetyltransferase [Desulfotomaculum acetoxidans DSM 771] # 1 143 1 145 149 82 37 5e-15 MNGEFRIRKARTEDVNAIFKIEESSFDDAWSKKLITSVLENEFAHNYVAENEKLDLVGYI FISEILGDVSVDNIAVDKNYRGIGISKLLMDKLIDLYGNNPITLEVRTDNIEAVNLYKRY GFAESGLRKDYYGLGIDAIIMWRR >gi|289656170|gb|ADCS01000020.1| GENE 35 33488 - 34483 775 331 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229232313|ref|ZP_04356740.1| (SSU ribosomal protein S18P)-alanine acetyltransferase [Cryptobacterium curtum DSM 15641] # 3 329 519 856 860 303 47 3e-89 MKVLAVESSCDETSVAVVEDGRTVLSNIISSQIKTHKQFGGVVPEIASRQHVEAMNTVLA EAIKEAGVKYEDIDLVVATRGPGLIGALLVGLNSAKAFAYAIEKPFIGVNHIYGHVCANY ISNRDLEPPFIGLIVSGGHTYLIKVRDYVDFELVGRTRDDATGEAFDKVARAMGIGYPGG PIIDKLAKEGNANIEFPRVMLEEGSYDFSFSGLKTAVINYLHNKQQKNEPYIVEDVAASF QVAVTDVLVEKSIRLAKSENMDKIVLSGGVAANEGLRQALKERAEDENIKIYYPDKILCT DNAAMIASAGYYLYKSGNYDKNSYAKPNLGL >gi|289656170|gb|ADCS01000020.1| GENE 36 34516 - 35685 1572 389 aa, chain + ## HITS:1 COG:CAC3299 KEGG:ns NR:ns ## COG: CAC3299 COG1979 # Protein_GI_number: 15896543 # Func_class: C Energy production and conversion # Function: Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family # Organism: Clostridium acetobutylicum # 1 388 1 388 389 443 53.0 1e-124 MYDFTFEVGTKILFGKDQLEKLPKEIKKYGNRVLLCYGGGSIKRIGLYDDVVKLLNDNEI FYCELDGIESNPRVESAEKGIQIVRENNLNFILAIGGGSVIDCAKLVAAGVYTDCTPWDI VISKCNVEKAVPLGTILTIAATGSEMDNVSVITNLKTKEKLAWGTKLVLPKFSFMNPEYT FSVPKKHTAAGVADIMSHTMENYFTLNDGCYLQDRFAEGILKTCVEYGPVVYNNPENYDA RANIMWANSWAINGILDSGKATDWSVHAMEHELSAFYDITHGVGLAILTPNWLKYVLNED TVSKIRTFGINVFGIEQSDDEFADANKAIDTLREFFNSMEIPDTLTKVGIGEEHLEEMAK LTIEHKNGIINGFAKLDEKDVLEIYKMSL >gi|289656170|gb|ADCS01000020.1| GENE 37 35770 - 36564 567 264 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299143697|ref|ZP_07036777.1| ## NR: gi|299143697|ref|ZP_07036777.1| hypothetical protein HMPREF0629_00551 [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 264 1 264 264 451 100.0 1e-125 MKNFFSFLILLFLIPTSVFADMGPKPEMNIRVYNVPQGFKIYLSCDNYKDYNLYEEEKIG ESEFLKFADEHKLIVHRESEGGIPIWLRVSETKGYDTYNYSYRVPSKFKIAVINSKGEVS YSNEVEVKAFNEEFSFNYENMQVKRNYFLLALYSLQFLKTFVITLILEVGFLYLVGYRTK RDLRKIVILNLITQILLNVILTYALIKSGSFFALTIIIPVEIFIFALEGVYLGATLESFG KFRNTVSVIIANLISFGIGFYLIK >gi|289656170|gb|ADCS01000020.1| GENE 38 36573 - 38114 1518 513 aa, chain + ## HITS:1 COG:L195271 KEGG:ns NR:ns ## COG: L195271 COG2509 # Protein_GI_number: 15673161 # Func_class: R General function prediction only # Function: Uncharacterized FAD-dependent dehydrogenases # Organism: Lactococcus lactis # 1 510 1 525 535 423 45.0 1e-118 MILIKNIKLEQDSIQLLESKLKKVLKLEKFEYEIYRKSIDARNSITFNYQVIIKENISEK KLSKIKDAVFYEEPNFEISLPHKKSKTVIVGSGPAGLFCGYILSKYDCDVMIIERGEQIE DRIKSIDSFLNGKELNINSNIQFGEGGAGTFSDGKLTARSKDIRVREVLKIFVENGAPQD ILYDAKPHIGTDILRKVIVNMRNFILKNGGEFEFNTVFSDICIENAKVKNIIAKDKKMYA DNYVLALGNSSRDTFYMLSKKIKMKNKPFAVGFRIEHLQKNINFSQYKCENESLPAASYM LTYNDKNLGLSGYTFCMCPGGYVINASSERGMLCVNGMSYHKRNGENANSALIVTVDESI YGTELLAGMEFQKRIEKRAFELGGSNYFAPIQKIADYLENRATTKLGLVKPTIKPGYTLS NLRGIYPDIVDEVISNSIINMDRKLKGFAISDGILTGVETRSSSPVRILRDENLKAEGIM NLYPIGEGSGYSGGIVSSAIDGIKAAEKIIRGE >gi|289656170|gb|ADCS01000020.1| GENE 39 38116 - 38595 543 159 aa, chain + ## HITS:1 COG:FN0809 KEGG:ns NR:ns ## COG: FN0809 COG0219 # Protein_GI_number: 19704144 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted rRNA methylase (SpoU class) # Organism: Fusobacterium nucleatum # 2 155 1 148 150 198 61.0 4e-51 MLNIVFYEPEIPFNTGAIARTCGLTKTRLHLIEPLGFSVDSSHLKRAGLDYWHLVDINYY KSYDDFLEKNEDEMKDGASLYFATTKAEQKYTDVKFKDGDYIMFGPETRGIPESILFNDI EHCIKIPMLKDYGRSLNLSNSANIILFEALRQLDFLGLE >gi|289656170|gb|ADCS01000020.1| GENE 40 38728 - 38877 200 49 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227499796|ref|ZP_03929891.1| ribosomal protein L33 [Anaerococcus tetradius ATCC 35098] # 1 49 1 49 49 81 69 8e-15 MADRVVLECTQCKQRNYITYKNKKTNTERIELKKYCKFCKEHTTHKETK >gi|289656170|gb|ADCS01000020.1| GENE 41 38897 - 39109 281 70 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299143701|ref|ZP_07036781.1| ## NR: gi|299143701|ref|ZP_07036781.1| preprotein translocase, SecE subunit [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 70 1 70 70 100 100.0 4e-20 MAAKDSVKKTEEKSLSKYFRGVKSEFKKVVWPTKQEVLNYSAIVIVVSILFSLLLALYDK IVLTLFKFII >gi|289656170|gb|ADCS01000020.1| GENE 42 39124 - 39678 722 184 aa, chain + ## HITS:1 COG:CAC3149 KEGG:ns NR:ns ## COG: CAC3149 COG0250 # Protein_GI_number: 15896397 # Func_class: K Transcription # Function: Transcription antiterminator # Organism: Clostridium acetobutylicum # 14 183 3 171 173 199 62.0 3e-51 MEDERQINLEDREKEAKWYVIHTYSGHENKVKANMEAMVVNRNMEDLIFDIQVPIEEYVE NKEGSKKVKERKLFPSYVLVKMIMNDESWYLVRNTRGVTGFVGPGSKPVPLSDEEVITLG VCDNKEIFGEYEVGETVKVISGPFNDFVGKIDSCNYEKKKIKVSVSMFGRDTLVELDFNQ VIKQ >gi|289656170|gb|ADCS01000020.1| GENE 43 39743 - 40168 596 141 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|126697628|ref|YP_001086525.1| 50S ribosomal protein L11 [Clostridium difficile 630] # 1 139 1 139 141 234 85 1e-60 MAKKVIALVKLQIPAGKATPAPPVGTALGPHGVNIMQFTKEFNAKTADQAGLIIPVVLTV YQDRSFTFITKTPPAAVLIKKTINLNSGSGEPNKKKVGKITKAQVKEIAELKMKDLNAAS VEAAMSMISGTARSMGVEVVE >gi|289656170|gb|ADCS01000020.1| GENE 44 40209 - 40910 878 233 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169338094|ref|ZP_02622460.2| ribosomal protein L1 [Clostridium botulinum C str. Eklund] # 1 231 1 231 232 342 71 2e-93 MPKRGKKYLESAKLVDKTKLYDVTEAIELVQKTSVTKFDSTVELAVRLGVDPRHADQQVR GTTVLPHGTGKVKRVLVLAKADKLKEAEEAGADYVGGEELVEKIQKENWFEFDVVIATPD MMGVVGKIGRVLGPKGLMPNPKSGTVTFDVGNAVKETKAGKVEYRVDKAAIINVPIGKVS FGTEKLEDNFRSLMSAIIKAKPAAAKGRYLKSVTVATTMGPGVKINGQKLVEQ >gi|289656170|gb|ADCS01000020.1| GENE 45 41342 - 42151 1022 269 aa, chain + ## HITS:1 COG:BS_yvgL KEGG:ns NR:ns ## COG: BS_yvgL COG0725 # Protein_GI_number: 16080391 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type molybdate transport system, periplasmic component # Organism: Bacillus subtilis # 1 265 1 257 260 152 35.0 7e-37 MNKKLLVLVVTLLVILTACQGKDNKEMGKNDEKKELVVFAAASMTETLEKIKTLYEEEHP EIELIYTFDSSGTLKTQIDEGATCDVFISAALKQMNAIDPKESKEEISNPIDSESRINLL ENKVVLVVPNGNVKSIKNFEDLNTDTVSSIALGNSDVPVGQYSEEILTNLGIWNEIQNKI TFGSNVKEVTTWISEKAVDCGIIYKTDAFSAGLEVVDEAEEGEINTPVIYPAAILQNSKN AKEAKEFLEYLKSDSAKEIFESVGFAVVE >gi|289656170|gb|ADCS01000020.1| GENE 46 42156 - 42827 694 223 aa, chain + ## HITS:1 COG:SA2073 KEGG:ns NR:ns ## COG: SA2073 COG4149 # Protein_GI_number: 15927858 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type molybdate transport system, permease component # Organism: Staphylococcus aureus N315 # 1 222 1 222 223 155 41.0 4e-38 MTDYYPLLNSIRIASISSIITFLTGIFIAYYIERLPRIIKGVLDVILTMPLVLPPTVIGF FLLKLLGPNTVIGMWFLETFSVRLVMNWYSSIFATVIVTFPLMYRTARGAFESFDWNLKY AAQTLGKNDIWIFWKIIFPNCKQGIIAGVVLSFARALGEYGATSMVSGFTPGKTATISTT VYHMWRIGRDDIAYKWVIINIMISFAVLITINLLEKKKSRRVF >gi|289656170|gb|ADCS01000020.1| GENE 47 42830 - 43876 1137 348 aa, chain + ## HITS:1 COG:sll0739_2 KEGG:ns NR:ns ## COG: sll0739_2 COG1118 # Protein_GI_number: 16331977 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type sulfate/molybdate transport systems, ATPase component # Organism: Synechocystis # 2 281 38 318 395 220 38.0 3e-57 MLKLDIRRRLKDFNIDVNFEFSKSVLGLLGASGSGKSMTLKMLSGLVKPDSGYIVLDDTV LFDSDSSIDLKPQMRNIGYLFQDYALFPNMTVEKNILAGVRTGSYKEKIKKVNSVLNDLK IEKLKKCFPNNLSGGEKQRVALGRILVNNPKLILLDEPFSALDEYLKWQIEIEVKQVLEE YNIPSILVSHNKDEVYRMCDEVCVLHCGKSEPIQETKSLFLKPNTLSAAMLSGFKNYSEI KYVEKDRVYAIDWDIYLSVLENNFENKIVGINSSSFKILNANIEREENIFHLNEYKVQVE LFSVMIIAKISSFAKPLYIEIENNEWERIKNFEDIFIQIKSDDIIFLR >gi|289656170|gb|ADCS01000020.1| GENE 48 43904 - 44839 1062 311 aa, chain + ## HITS:1 COG:CAC1993 KEGG:ns NR:ns ## COG: CAC1993 COG2896 # Protein_GI_number: 15895263 # Func_class: H Coenzyme transport and metabolism # Function: Molybdenum cofactor biosynthesis enzyme # Organism: Clostridium acetobutylicum # 1 311 1 318 318 226 43.0 6e-59 MKDQYFREISYFRISLTPVCNFRCIYCMPYNQSFDKVNLIPMEQIEQIIKVSAQNGIKKI RFTGGEPLLREGLLPLCHKISNKIGIDEICLTTNGSFLKDMAKDLKKVNVKRINLSLDTL DSKKFSDITRGGKLKSTLEGLDEALKLGFKVKINTVLMGGINVDEISNLVELTKELPVEL RFIELMRMGVTKNWQEDVFVKNDIVLDKIKGLKQIGNFGVASVYKIPGYCGEIGLISPIS SCFCENCNRIRMTSDGKLKPCLHSKEEFDICNLSKEQVEEKFKEAVFAKPFQHKLLRGES ETNRTMNLIGG >gi|289656170|gb|ADCS01000020.1| GENE 49 44841 - 45323 581 160 aa, chain + ## HITS:1 COG:CAC1992 KEGG:ns NR:ns ## COG: CAC1992 COG0315 # Protein_GI_number: 15895262 # Func_class: H Coenzyme transport and metabolism # Function: Molybdenum cofactor biosynthesis enzyme # Organism: Clostridium acetobutylicum # 4 155 5 156 161 159 56.0 2e-39 MKKFTHFNEDGMPKMVDVSKKDKTVRIAAASGQVLLNAETFKRIKDKTIEKGDVLAVAQV AGIMAAKKTSDIIPMCHNINLSGVDIKFILDEDKNIIEVQSIIKTTSETGVEMEALHTVS VAMLTIYDMCKAVQKDIILTNIYLMGKVGGKSGEYGSIVI >gi|289656170|gb|ADCS01000020.1| GENE 50 45320 - 45751 535 143 aa, chain + ## HITS:1 COG:CAC1991 KEGG:ns NR:ns ## COG: CAC1991 COG2258 # Protein_GI_number: 15895261 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 2 143 4 145 145 152 57.0 1e-37 MRVVSVSISKEKGTKKIPVSYIEIKKDHGIIGDAHAGNWHRQISLLGIESLNKMKLEFPN LSAGDFAENILTEGIELYNLSVGTVLEIGNTKIEVTQIGKECHKGCEIRKITGDCVMPRE GIFGIVLKEGKIFPGDSINFIER >gi|289656170|gb|ADCS01000020.1| GENE 51 45761 - 46738 939 325 aa, chain + ## HITS:1 COG:BMEI1902 KEGG:ns NR:ns ## COG: BMEI1902 COG0303 # Protein_GI_number: 17988185 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin biosynthesis enzyme # Organism: Brucella melitensis # 6 325 10 320 321 105 25.0 1e-22 MIEKVRTEDAVGKPLIHDITSIRKDGFKGVLFKRNHIIQSDDIDKLKDIGKEHIYVGELE DNQVHEEDAILEIAPKIVDDNIEWGLPSEGKITFKSKVRGLFKVNEEAAFKLNSIEDYTF ASISNNTVVDVGDKLIGGRIVPLYTTRDVVEEAKKISEENNPIYRVLKFYKKRVGIIITG SEIYSGRIKDMFEPMIREKLKFYGGEIVDVIFVPDDIDKLLESMRELLSKDIELLILSGG MSVDPDDITPTAIRNISSDIIFKGVPIQPGNMLTVGVLKKTYIVGVPGASIHSSKTSLDL LLPKIFSNSPVNKDEFIKMSVGGLL >gi|289656170|gb|ADCS01000020.1| GENE 52 46740 - 47246 224 168 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|134277849|ref|ZP_01764564.1| ribosomal protein S16 [Burkholderia pseudomallei 305] # 10 147 3 146 194 90 38 1e-17 MIMSDKYSAGVLTISNRSYRGEREDLGGPILIELIEKLGFEVKNFKIVPDERINIRETIE EWVDEDDLALILTTGGTGFSDRDITPEITIELCDRRVPGISEAMRSYGAKFTPMSYLSRA ESGIRKNTLIINFPGNPKAIRENFEAIIPFLKHGIDILRGKNNLKNVH >gi|289656170|gb|ADCS01000020.1| GENE 53 47352 - 47696 530 114 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299143711|ref|ZP_07036791.1| ## NR: gi|299143711|ref|ZP_07036791.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 114 1 114 114 186 100.0 4e-46 MAKYERRFKGNFDEVLKLCKDTIEKKSLTASLEDQSYFENEKFKASVSIFERFSYRGSNR VSLSITLIESDEELFISAITSGGSQDVFSKVNAFGEVSFLETLIPAVEEYIKKY >gi|289656170|gb|ADCS01000020.1| GENE 54 47843 - 49180 1476 445 aa, chain + ## HITS:1 COG:TP0112 KEGG:ns NR:ns ## COG: TP0112 COG3579 # Protein_GI_number: 15639106 # Func_class: E Amino acid transport and metabolism # Function: Aminopeptidase C # Organism: Treponema pallidum # 1 442 1 442 450 430 46.0 1e-120 MELKINKLDELRNKFGADRANRVAQNAAMENGIDKAAVKNMVYEEQRHSFNVNLNQGDIT NQKQSGRCWMFSALNVMRYRIIKDLNLKTFELSQSYPLFYDKLEKSNYFLESILKTLDED IHSRLVAHILRDPLGDGGQWDMFVNLVKKYGVVPKYVMGESANSSNTRALDDYLTKLLRG YAVKLRKAHESKKGMDELNSMVEKYMEEIYNALCISLGTPPTEFDFEVRDKDDNYICEKN LTPIEFFNKYVKMNLDDYISIINAPTKDKPYNRTFTVKYLGNVVEGNKVKYLNLPIEELK KAAISQMKDGEPVWFGCDVGQFFYRSGSVLDTETIKMDDLFNVEFDMTKEEKLDYGESLM THAMVFMGVEVDEGGISKRWRVENSWGKDSGKDGYLVMSDRWFDQYMYQVVVNKKYLSEE ILKAWDTETIELEPWDPMGSLAKER >gi|289656170|gb|ADCS01000020.1| GENE 55 49182 - 49466 269 94 aa, chain + ## HITS:1 COG:no KEGG:CKR_1663 NR:ns ## KEGG: CKR_1663 # Name: not_defined # Def: hypothetical protein # Organism: C.kluyveri_NBRC # Pathway: not_defined # 6 89 20 104 106 65 42.0 4e-10 MFLFNRKIFKEEDYKKALELIEELVKKSQAEKGCIVYKAFRDIDNKYGLCIYEEWDSKES LEAHQSTEHFKRIVPQISEIAYERSPLYRFEDLD >gi|289656170|gb|ADCS01000020.1| GENE 56 49634 - 51700 2054 688 aa, chain + ## HITS:1 COG:CC3714 KEGG:ns NR:ns ## COG: CC3714 COG1566 # Protein_GI_number: 16127944 # Func_class: V Defense mechanisms # Function: Multidrug resistance efflux pump # Organism: Caulobacter vibrioides # 480 600 238 368 396 61 34.0 7e-09 MTRILGFFKRRKKTVIVAGIFLLLIIGFFSFRNKGGNYQPLLKNETTELKKKEFVSAVNE SGKVLSEDSAQIYAEKSLPVKEINIEVGMQVKKGDVIARLDDTTIKQQIAIKSAMIGATN KSTSLQVKNAQDKLDEALKNKSDGTNGSVVSANNAVTAAYDAWITAEKTYNNYKKSLEEG YNEQLVANKSTMDSLQNGANSAGLNYAQSNDRLNKEIQSLNESGRLAYMKSVELGNLKAR DSENDRRIAELQRKQETLKAQSTAPQIDPVLSARLTQANSDMVNLKNRLEFEKLRVPKDE NEINILQLSVENQQKLIDSIQAEIKNSMIDNSSLIKELENVTNQISELNTISKDLKAKIV ELESDIKKYQAEVETGRKTIDEKKKDFEQQRLALENANKNISSNVEQKNLSDKSRQDMLK SYRKNADDLKHAYENAIKNVKVAEVAQDNEINALKNNLKTAGANGDTTVNSIELKNLYQD LERTVIKAPMDGTITEKNLIQGQVPTDYVAKIETIDRTIVESQIKEFDLNRVKVGMDVEI TSDAFGKDKIFKGKVESINPTPSKKRDQSQNSNEVVYTTKISFDDTSVTDLKPGMSIRVK YVMEKKQNVFVVPSDAIYEKNKKSFILAVDGDSGVFKIREIEVTVSSGNDFESVIESKEL NEKMRVINSPDNYSAGVDVNVVDMQTGV >gi|289656170|gb|ADCS01000020.1| GENE 57 51702 - 52385 293 227 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 205 1 200 223 117 32 1e-25 MQKIIDMKGIVKRYYIGEPNELEILHGIDIEVFDSDFISIVGASGSGKSTLMNIIGLLDR ATEGSYILGGLDINKAVDTELSIIRNKKIGFVFQNFNLIPRLSALGNVELPMLYGKVPKA ERQERAMELLRLVEMDTRANHNPNELSGGQKQRVAIARAMANNPEIILADEPTGALDSKT GRIVMDLFHKLNDVQKKTIILITHNRELADETPRILTMSDGRIEVSK >gi|289656170|gb|ADCS01000020.1| GENE 58 52382 - 53659 365 425 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163788031|ref|ZP_02182477.1| 50S ribosomal protein L9 [Flavobacteriales bacterium ALC-1] # 5 425 7 413 413 145 26 6e-34 MSIFENIKIAIEGLRLNKMRSFLTMLGIIIGISSVIGIWTIGHAMSNSVSKGFDSFGNTV ISVSVTAREKDQNFDYTPDINDRDKIKQYQIDEMLNRYSDYIKSISISGMGASGKVFAGR AKSNVRIESVTAGAKDVNNLKMVSGRFIDDKDVNQQKEVAVISDKVVNKIYGGKVENALG SEIEINTNNSGIRTYLVVGVYKYEPIDFGIFGGDTSGETTNVYIPMTVGNRQFGTSNTVT ESYQTINVNAKSREVISQTSAMIEKFFNDNYYNENENYKVTCQTIESQISQINKVMGTIK LAIGAIAAISLIVGGIGVMNILLVSVTERTREIGIRKALGATNSDIRGQFIIESIIICSI GGLIGILFGTSLGYGGSILLKSPTLPSAVSVLVAVGFSMVIGIFFGYYPANKAAKLNPID ALRYE Prediction of potential genes in microbial genomes Time: Fri May 27 07:30:22 2011 Seq name: gi|289656169|gb|ADCS01000021.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.21, whole genome shotgun sequence Length of sequence - 23709 bp Number of predicted genes - 27, with homology - 24 Number of transcription units - 10, operones - 6 average op.length - 3.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 99 - 158 11.8 1 1 Op 1 . + CDS 179 - 259 70 ## 2 1 Op 2 . + CDS 219 - 1310 1312 ## COG3641 Predicted membrane protein, putative toxin regulator + Prom 1609 - 1668 11.6 3 2 Op 1 . + CDS 1733 - 2860 1365 ## COG0116 Predicted N6-adenine-specific DNA methylase 4 2 Op 2 . + CDS 2895 - 4016 1179 ## COG2208 Serine phosphatase RsbU, regulator of sigma subunit + Prom 4023 - 4082 4.3 5 2 Op 3 . + CDS 4102 - 4200 63 ## + Prom 4258 - 4317 5.2 6 3 Op 1 34/0.000 + CDS 4397 - 5068 550 ## COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters 7 3 Op 2 . + CDS 5065 - 6477 1542 ## COG1122 ABC-type cobalt transport system, ATPase component 8 3 Op 3 . + CDS 6470 - 7057 711 ## HMPREF0868_0381 conserved hypothetical protein TIGR02185 + Term 7076 - 7125 13.2 + Prom 7117 - 7176 9.6 9 4 Tu 1 . + CDS 7212 - 7697 226 ## gi|299143721|ref|ZP_07036801.1| hypothetical protein HMPREF0629_00577 + Prom 7800 - 7859 5.0 10 5 Op 1 . + CDS 7924 - 8358 449 ## CLJ_B1079 acetyltransferase, GNAT family 11 5 Op 2 . + CDS 8361 - 9008 517 ## CT1900 hypothetical protein - Term 9046 - 9078 3.2 12 6 Tu 1 . - CDS 9079 - 9597 629 ## COG0778 Nitroreductase - Prom 9668 - 9727 10.4 + Prom 9568 - 9627 8.9 13 7 Tu 1 . + CDS 9687 - 10583 883 ## COG1313 Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins + Term 10603 - 10652 -1.0 - Term 10743 - 10771 2.3 14 8 Tu 1 . - CDS 10872 - 11852 938 ## COG0340 Biotin-(acetyl-CoA carboxylase) ligase - Prom 12038 - 12097 80.3 + TRNA 12003 - 12094 68.8 # Ser GGA 0 0 + Prom 12374 - 12433 8.8 15 9 Op 1 . + CDS 12606 - 12845 416 ## FMG_1215 hypothetical protein 16 9 Op 2 22/0.000 + CDS 12850 - 13080 308 ## COG1918 Fe2+ transport system protein A 17 9 Op 3 . + CDS 13092 - 15242 2719 ## COG0370 Fe2+ transport system protein B 18 9 Op 4 . + CDS 15251 - 15385 59 ## + Term 15396 - 15444 8.1 + Prom 15390 - 15449 8.5 19 10 Op 1 . + CDS 15571 - 15972 362 ## TDE1508 hypothetical protein + Term 15986 - 16025 -0.4 20 10 Op 2 . + CDS 16063 - 16731 243 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 21 10 Op 3 5/0.000 + CDS 16757 - 18055 1285 ## COG0672 High-affinity Fe2+/Pb2+ permease 22 10 Op 4 3/0.000 + CDS 18069 - 18725 805 ## COG3470 Uncharacterized protein probably involved in high-affinity Fe2+ transport + Term 18772 - 18805 3.1 23 10 Op 5 4/0.000 + CDS 18844 - 20076 964 ## COG4393 Predicted membrane protein 24 10 Op 6 10/0.000 + CDS 20092 - 21375 1588 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 25 10 Op 7 36/0.000 + CDS 21388 - 22521 185 ## PROTEIN SUPPORTED gi|163788031|ref|ZP_02182477.1| 50S ribosomal protein L9 26 10 Op 8 1/0.000 + CDS 22532 - 23239 281 ## PROTEIN SUPPORTED gi|225084369|ref|YP_002657150.1| ribosomal protein S16 27 10 Op 9 . + CDS 23239 - 23670 664 ## COG4939 Major membrane immunogen, membrane-anchored lipoprotein Predicted protein(s) >gi|289656169|gb|ADCS01000021.1| GENE 1 179 - 259 70 26 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSVILTIFNEEKYNERIKTIFREKRH >gi|289656169|gb|ADCS01000021.1| GENE 2 219 - 1310 1312 363 aa, chain + ## HITS:1 COG:BH3254 KEGG:ns NR:ns ## COG: BH3254 COG3641 # Protein_GI_number: 15615816 # Func_class: R General function prediction only # Function: Predicted membrane protein, putative toxin regulator # Organism: Bacillus halodurans # 6 363 3 334 336 225 43.0 1e-58 MRELRQFLERKDIEISIKRYGIDALGAMAQGLFCSLLIGTIINTIGMQFKIPWLMTTVAT INGTDYTIGSLASAMSGPAMAVAIGYALKCPPLVLFSLITVGFSSNALGGAGGPLAVLFV AIIAAEFGKAVSKETKVDILVTPIVTIVIGVALSAWWAPALGNAAMKVGNVIMWATNLRP FLMGILVSVLVGIALTLPISSAAICAALGLTGLAGGAALAGCCAQMIGFAFMSYRENYIG GLVSQGIGTSMLQMGNIIKNPKIWIPPIITSAITGPIATCIFKLEVNGPAVASGMGTCGF VGQLGVYTGWLKDIEAGIKTGVTTNDWLGLILISFVLPAVISVLICKILRIIGWIKDGDM KLD >gi|289656169|gb|ADCS01000021.1| GENE 3 1733 - 2860 1365 375 aa, chain + ## HITS:1 COG:BH1771 KEGG:ns NR:ns ## COG: BH1771 COG0116 # Protein_GI_number: 15614334 # Func_class: L Replication, recombination and repair # Function: Predicted N6-adenine-specific DNA methylase # Organism: Bacillus halodurans # 1 374 1 376 385 364 46.0 1e-100 MNNIKIIATANFGLEAVLKRELINMGYENLEVSDGRVSLIGNLTDVAKLNLRLRTAERVL IELGTFEAYTFEELFDNTYKISWENIISEKGNFLVQGRSAKSKLYSISDCQRIVEKAIIK KLQTKYDIYRFEKSEERYKIEVSVFKDIASITLDTSGDGLHKRGYREVSYKAPISETIAA AMVMLSYWKEDRILCDPFCGSGTIPIEAAMIGKNIAPGISRHFDSEKFIFMDEKIYKEER AKCYSEIDYDKKLQIFATDISYKAIEVAKNNAEILGLDEDIKFFVKDIRELDLPDDYGVI ITNPPYGVRIGGDEVKELEEELGKLYKTIPTWSLYAISSDEQFEKNFGKKSDRNRKLYNG KIKTYYYQYYGPRPK >gi|289656169|gb|ADCS01000021.1| GENE 4 2895 - 4016 1179 373 aa, chain + ## HITS:1 COG:FN1091 KEGG:ns NR:ns ## COG: FN1091 COG2208 # Protein_GI_number: 19704426 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Serine phosphatase RsbU, regulator of sigma subunit # Organism: Fusobacterium nucleatum # 96 364 172 444 447 97 26.0 3e-20 MNKPYKDSILNKDKLNYKILDGIVDLVRVLNTDNDVVFANKAMREMLGHDNNNMVCKLNE SILDPRITKRTLETGEVIQREEMIDNKYFSVKCSPVIGMNNEILGVVEVFRNISMERKLV SEIIEKNEMMTVEMTHAQKIQQALLPEKGMFENLKIDYIYRPSNMLSGDMFDIIKINDDN VGIYIADTVGHGFASSMVTMFIRLVMRNIPNSKLLYPSKTLTEIWNRFSALKLDIELYFT CFYGVYNIKTNKLTYSNAGHFPYPIIFRGDEIIELEANGFPITRFLKGVTYADDSIKLSE NDKLLFMTDGITETKNKNSTPFGTSRVKKIITENNGSELTALEKGVYKFMWGEQKDDITA LLIELQNLQETEK >gi|289656169|gb|ADCS01000021.1| GENE 5 4102 - 4200 63 32 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MDVSIGYLKILFESKYKIYLNDDKSFIKHNKY >gi|289656169|gb|ADCS01000021.1| GENE 6 4397 - 5068 550 223 aa, chain + ## HITS:1 COG:SP1437 KEGG:ns NR:ns ## COG: SP1437 COG0619 # Protein_GI_number: 15901289 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, permease component CbiQ and related transporters # Organism: Streptococcus pneumoniae TIGR4 # 85 223 11 144 147 63 30.0 2e-10 MDRRLNPLSIILINAFIPVVNTLFPTSKAIFLDLAVALFILFFTGLYSKAIKAILYLTVF FGLYVVSLNYFNSEVIISFFRMTTLFVPCIIFAYLLITQYNSSEILSSLQKLKLPKIFII GLTVTIRYIPTFRREFKTIKEAMSIRGVDFSIRRPIRTFEYLIVPQLFRCLSLSGELTSA GLTRGISAPNKRTGFFDRRFKFLDFLIFFILIMGYVLIIGEVI >gi|289656169|gb|ADCS01000021.1| GENE 7 5065 - 6477 1542 470 aa, chain + ## HITS:1 COG:MTH454 KEGG:ns NR:ns ## COG: MTH454 COG1122 # Protein_GI_number: 15678482 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, ATPase component # Organism: Methanothermobacter thermautotrophicus # 4 441 2 459 480 234 31.0 3e-61 MIENVIELKNLSFKYSEDKVNAIDGINCTVDKGKVIFIAGDSGSGKSTLLNIINGIIPEV IEGDLNGKVYINKAENLKIYERSLILGNVFQNPRSQFFTTNTTSELVFAMENYGKSYEEM KERLIRIVDEFKIEKLLDRDIFSISSGERQFLALLTVLIMNPNVIIFDEPSANLDYGNAM RLKRQIEELRESGKTVVVADHRCFYLRGIIDKVLLIEDKTVIEFGSEEEFFNCAYGKRVF DLFTHKYKERKIVKSEIETVKLQDVYYKNILENINVSFNKNETTVIVGTNGAGKTTLAKL ISKIEKADRGKIEIENRALYIMQDADFQLFGATCLKELEITSKNEAENMEILRLLNLYDV AEKHPQSLSGGQKQRLQMAISLVSKNDVIILDEPTSGLDKNSMNRVIELIEKLKQNRTLI IISHDYEFIRKSADRVVYLKDKKIEEDFYLEHENVERLNNIYKQMEEYYE >gi|289656169|gb|ADCS01000021.1| GENE 8 6470 - 7057 711 195 aa, chain + ## HITS:1 COG:no KEGG:HMPREF0868_0381 NR:ns ## KEGG: HMPREF0868_0381 # Name: not_defined # Def: conserved hypothetical protein TIGR02185 # Organism: Clostridiales_BVAB3 # Pathway: not_defined # 8 187 10 189 448 175 42.0 9e-43 MNKKLKIKDVLLIALLTAVYMIIYMATMVIITPLGALGHAISPGICSLFSGIVIYFMSRK IGKMWQYSLMTLLVMANFALMGGGYIPWLISSVSMAVIADFIASKSRDVSVFKVATASGI MHVGQAWGAIIPSIFFVESYKETWIKRGQTLESMNEQIKYTAGIWGIISTVLVFVLAFIG VYIGYLILRKHFKEN >gi|289656169|gb|ADCS01000021.1| GENE 9 7212 - 7697 226 161 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299143721|ref|ZP_07036801.1| ## NR: gi|299143721|ref|ZP_07036801.1| hypothetical protein HMPREF0629_00577 [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 161 1 161 161 252 100.0 5e-66 MDILFLQVVLYCLLFTLLVALSFRGNAINIVYFYPKSVIDKVVEFGYTDYKTVKRNKIIF YSLFIVLMFGSLILIVGSWNGINDFKQAFIQLNIFLQSWNIYDGLVMDILWTSNSKSLKI KGIKDSEYIPGVIDVIKKRIIFIPVLWVASLILAKFIVFIY >gi|289656169|gb|ADCS01000021.1| GENE 10 7924 - 8358 449 144 aa, chain + ## HITS:1 COG:no KEGG:CLJ_B1079 NR:ns ## KEGG: CLJ_B1079 # Name: not_defined # Def: acetyltransferase, GNAT family # Organism: C.botulinum_Ba4 # Pathway: not_defined # 2 142 3 145 145 79 34.0 5e-14 MFKILCKDDLDILIKNYILFQNSRGDSWTDETARKRISQILDTTDSLFVGIFEDDLLKGF SMGYFKQFDDILLFYLEEIMIFNEYQNNGLGNKLMIEIERIAKERGASKISLLTTEDDRH QRFYGRLGFKRSGLLVPMNKNIGR >gi|289656169|gb|ADCS01000021.1| GENE 11 8361 - 9008 517 215 aa, chain + ## HITS:1 COG:no KEGG:CT1900 NR:ns ## KEGG: CT1900 # Name: not_defined # Def: hypothetical protein # Organism: C.tepidum # Pathway: not_defined # 33 210 195 369 381 115 37.0 8e-25 MKKINIFFIIVLVIIGIIIFSFINRDTGEKDVVAYKPVIYLYPKEKIDLTVRLDYNGKLT STYPKYENGWNVTAYPDGKLINHSDGREYSYLFWEGIQDVKYDMERGFVVKGEETAQFLQ NILGKMGLTPKEYNEFIVYWLPKMEINNYNLINFQEKAYTDNAKLEIVPKPDSIIRVFMT YMPLDKKIEIEEPVIKSFKRNGFTVVEWGGTELNR >gi|289656169|gb|ADCS01000021.1| GENE 12 9079 - 9597 629 172 aa, chain - ## HITS:1 COG:CAC3555 KEGG:ns NR:ns ## COG: CAC3555 COG0778 # Protein_GI_number: 15896791 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Clostridium acetobutylicum # 4 172 3 172 174 101 28.0 5e-22 MLKDTILERRSIRKYKDEKVDRETLEEILMYSLMGPSYANSHPVQFLIIEDKESLKKLSE IETFGTRYIAEVPQVILILVDRELAPTWIEEGSVVASYLQLLAQENGLNTCWVDLKEGKT SKGDEIQAFLRELFDIPKKFSSLCMIPIGYGNEKVKKREKFDIATKIHNEKF >gi|289656169|gb|ADCS01000021.1| GENE 13 9687 - 10583 883 298 aa, chain + ## HITS:1 COG:CAC3242 KEGG:ns NR:ns ## COG: CAC3242 COG1313 # Protein_GI_number: 15896487 # Func_class: R General function prediction only # Function: Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins # Organism: Clostridium acetobutylicum # 8 295 5 295 298 312 51.0 5e-85 MKRYIEYENCKICPRNCGVNRYNKTGFCKMPANLYVSHTSLHMWEEPPITGENGSGTIFF TGCNLRCVYCQNYKIAIENFGKCIDESELADIFLKLQNKGAHNINLVTPSHYILNIADAI DIAEMRGLNIPIVYNTSSYEKVESLKLLSGKIDIYLADLKYFDKKLSEKYSKAADYFEIA SGAIEQMFNQVGRFEYDGELLKRGLVIRHLLLPEHIEDSKKVVKYLYDKYSDDIIFSIMS QYTPVRKLKYDNLNKRVDEREYNELVDFCIELGIENAFIQDGESATESFIPNFNVNKV >gi|289656169|gb|ADCS01000021.1| GENE 14 10872 - 11852 938 326 aa, chain - ## HITS:1 COG:SP1900_2 KEGG:ns NR:ns ## COG: SP1900_2 COG0340 # Protein_GI_number: 15901727 # Func_class: H Coenzyme transport and metabolism # Function: Biotin-(acetyl-CoA carboxylase) ligase # Organism: Streptococcus pneumoniae TIGR4 # 107 322 40 248 252 145 43.0 8e-35 MNTKDNILKILEENRDKYMSGEVLAKELSLSRTSIWKAVKSLKEQGYEIKSSTNKGYKID ERCDKLSSFGIKNYLIPQLKDIDIYCYETIDSTNTQAKRLLYSKDLENFTVLISDEQTKG RGRKGRSFSSPKGSGIYMTIILFPKDNFKINSFDLITVRAANAVVNAIKSKTDKEPKIKW VNDIFLNHKKICGILSEADYDFESKQIKSIIIGIGLNFSTDLSAFSKELRPIVGSLLPKD LLRNEFIGEILNEFYKACYEQQREEILKIYKDNSLLLGRSVSFEKDSKKYEATAIDINEN GNLIVELEDGSIISLSSGEVSVKGQF >gi|289656169|gb|ADCS01000021.1| GENE 15 12606 - 12845 416 79 aa, chain + ## HITS:1 COG:no KEGG:FMG_1215 NR:ns ## KEGG: FMG_1215 # Name: not_defined # Def: hypothetical protein # Organism: F.magna # Pathway: not_defined # 2 77 1 74 74 67 61.0 1e-10 MLNLLMVPKNIDFKIVKIREKKIKRLNYERHLINLGFVEGAKISVVSETNGNLIVKLKDS RVAIGNDIAMAIMVEEIKE >gi|289656169|gb|ADCS01000021.1| GENE 16 12850 - 13080 308 76 aa, chain + ## HITS:1 COG:L192240 KEGG:ns NR:ns ## COG: L192240 COG1918 # Protein_GI_number: 15672170 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+ transport system protein A # Organism: Lactococcus lactis # 8 71 85 148 152 66 46.0 1e-11 MTLKDAVVGSYYKIIKINGAGPLKRRIMDMGITKGTEIYIRKVAPLGDPIQINLRNYELS IRRVDAEFIEIEKVVK >gi|289656169|gb|ADCS01000021.1| GENE 17 13092 - 15242 2719 716 aa, chain + ## HITS:1 COG:L190009 KEGG:ns NR:ns ## COG: L190009 COG0370 # Protein_GI_number: 15672169 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+ transport system protein B # Organism: Lactococcus lactis # 5 701 4 702 709 605 44.0 1e-173 MTITIALAGNPNSGKTTLFNALTGSHQYVGNWPGVTVEKKTGEYKKNRDIKFTDLPGIYS LSPYTLEEVVSRDYLLNEHPDVIIDVIDASNIERNLYLATQLSELGIPIILALNMMDVVK KNNDIIDTEKLEKLLNCKVVEISALKNFNLDYLIKVATDEVENRNNVSEIKAFSENVEGY ISEIENSINSIRNNPAKRWIAIKLFERDLKISSEISITDTEKEKIEKIISGAETELDDDG EGIITDERYNFVTEIVSQTVKKGREGLTVSDKIDKIVTNRFLALPIFAVIMYGIYYLAIT IVGGPVTDWTNEVLFGEIVGGNASAALESIGVAEWLNSLITEGIIGGVGGVLGFLPIIAT LFLLISILEDVGYMARIAFILDRIFRKFGLSGKSFIPILMGTGCSVPGIMGTRTIENDND RRMTITVASFMPCGAKTEIIAMFAAVLGGHAWYGPIWYFGGIVAVIISGLILKKTNKFHG DPAPFVMELPEYHMPSIRNITKATLNRCKAFIIKAGTIILLCTVVIWFLKNISVNFEFRE FADSSTDSILSFIGKKLQWIFAPLGFGNWMATVATILGLVAKEVVVGTYGVVAGLGEVAA DDPGLLGVINANFTTVSILSFMFFNQLTLPCFAAMGAIKEEMGDNKWFGFAIGYQMLFSY TIALMIYQFGRVIEGEPFTAWTAVASIILVIYLYLLFRPNKYESKKTEVRRSVEEA >gi|289656169|gb|ADCS01000021.1| GENE 18 15251 - 15385 59 44 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNKPTIIALIIVLIVIVLAIKHIKNSKGCDCGCKSCNNSCKPKK >gi|289656169|gb|ADCS01000021.1| GENE 19 15571 - 15972 362 133 aa, chain + ## HITS:1 COG:no KEGG:TDE1508 NR:ns ## KEGG: TDE1508 # Name: not_defined # Def: hypothetical protein # Organism: T.denticola # Pathway: not_defined # 3 130 2 127 131 80 39.0 2e-14 MKKKQVFGFLFIVLGVLLALTPTFLATVCPPKEDGHFMKCHWMGNAVIALGIAIVICAVI FLFVKDESISLGMIHSNIILGVLALLMPLKIIGCCQMPTMHCNTHTKPMVCLLSGIYILL NIIYLFKKDKANS >gi|289656169|gb|ADCS01000021.1| GENE 20 16063 - 16731 243 222 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 4 219 5 214 305 98 27 4e-20 MFLLETKSLSKEFSRGGRKFRAVDGINFTLNKNEMVHIIGRSGSGKTTFLNLLSGILNPT SGEVLVEGKNLESMDDEQRSLYRNSFIGYVPQSLGTLPNLTVLDNVRMPHYLFKRDGDGI ERASMLLDWMGILSLKDEFPNKLSGGEIKRVLLARALMNSPKVIIADEPTSDLDFDTTKE IMNLFSKINKESISLIIVTHEIDILKYGNRVLVMNDGKLSER >gi|289656169|gb|ADCS01000021.1| GENE 21 16757 - 18055 1285 432 aa, chain + ## HITS:1 COG:FN1251 KEGG:ns NR:ns ## COG: FN1251 COG0672 # Protein_GI_number: 19704586 # Func_class: P Inorganic ion transport and metabolism # Function: High-affinity Fe2+/Pb2+ permease # Organism: Fusobacterium nucleatum # 13 406 2 407 433 305 45.0 8e-83 MKKNLLKINVVCFLLIMVFMFGSITDVNAETKYENWVQVADAMSEHLNNAVDIYEKGGDT AAKDAIDSINIAYFKFYEKIGFEKTVMSRISGKRGSDVEHQFYLAKKSIKGGSSLDEVKE EIDTLITMLHEDAHELDGTTGSESDTGSETIAGFNTFISVLGLTLREGLEAILVVAAIAA YLVKTNNKNYLKSVYMGAVLGIIFSVILAVMFNVIADKLGESTSGVGQEVFEGIAMFVAV IVLFYVSNWMLSKSEVEVWNQYIKTKVEQSITKGNMITLAFTAFLAVAREGAELILFFQG MRSNISNNPSYMWGGLAVAVAVLAVVYYAIAKLSVRLPLKPFFTATSWLMFILCISFIGK GVFELQEAGVIGRTIITAMNGFTIELLGVYDRVETLVPQIILLVVTIISVIYQNKNNRKK RAELEAAQNKQS >gi|289656169|gb|ADCS01000021.1| GENE 22 18069 - 18725 805 218 aa, chain + ## HITS:1 COG:TP0971 KEGG:ns NR:ns ## COG: TP0971 COG3470 # Protein_GI_number: 15639955 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized protein probably involved in high-affinity Fe2+ transport # Organism: Treponema pallidum # 54 218 34 204 204 227 65.0 1e-59 MLKRKNSIMALAVALILVFGATACGKKDNSSTTNEPKNKMEENVEKNTNKAEESAAPGED AGFDEFPIGDEQEHGPLVVAGVYFQPVDMEPAGNSLSKEESDCHIEADISASAEGATLGY GAGDFVPWLKVKALIQKEGSDKVQEVAFMPMNASDGPHYGANIKFEEGLGKYNVKFVISA PGNDYLLHVDKETGVTGRFWTEPIVVEWPDFEWAGPQW >gi|289656169|gb|ADCS01000021.1| GENE 23 18844 - 20076 964 410 aa, chain + ## HITS:1 COG:FN1355 KEGG:ns NR:ns ## COG: FN1355 COG4393 # Protein_GI_number: 19704690 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Fusobacterium nucleatum # 122 403 5 288 298 199 37.0 9e-51 MEAGIAFSLTLSILLAYYRTDRRETKKWVVGISVVLGFIAAIISAVLRSIPNLLNRTSLS FWSMVPVVISLIFILIFIIFEKSFRKKIGKLYEKIYTILLMLYIISSFFYYLPPVFVQMN NFVYYGESAVSTMVLFRVIGYVFGITMMILSAVALYSTGIRLESKQLERVVLGTLIIRGI NQVIVIVQRLYSLGLIPRRAWIFKMIAAIINHESYITFAMMMFLVLVPLTLWKGNIKIKE SYRNNAELRKIKFRMRNCRHWAQFFLILIVINILSLTVIKNYAGREVALSKPEEYQMEEG LIVVPLEILEDNHLHRYIYHSVDGVDVRFFLIKKAQNSYGVVLDACEICGPSGYFERNND VVCKLCDVVMNRGTIGFKGGCNPIPFPYVVHDKKIKIQTKDLDAMSYVFK >gi|289656169|gb|ADCS01000021.1| GENE 24 20092 - 21375 1588 427 aa, chain + ## HITS:1 COG:FN1354 KEGG:ns NR:ns ## COG: FN1354 COG0577 # Protein_GI_number: 19704689 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Fusobacterium nucleatum # 1 427 3 428 428 505 60.0 1e-143 MFWRMIRGALFRQKGKMLMIAFTIALGASLSTSMLNTMLGVGDKVNRELKAYGANINVLP KEASLLDDIYGMEEKKSTVQKYLKEDELGNIKTIFWAYNIVDYTPYFNVWVDVNNEVIDT KMVGTWFDNHMDLPTGEQIDTGMIRLKNWWEVQGEWLSDSDEDSVMLGAVFATRNAFNLG DELEIKTDNMTRKLKVKGIFNSGSDEDQYIFVPLKVAQDFANKKNVVNRIEVSALTTPDN DLARKAAKNPLSLTIKEWEVWYCTAYVSAICYQIQEVMTDSVAKPIRQVAESEGDILNKT TLLMVLITVLSLIGSALGISNLVTAGVMERSAEIGLQKAVGASNGKIIGTILTEIILTGI AGGIAGYFVGLGLTQIIGYKVFGSAIAPAPMVIPIVVILILLITILGSIPSIKYLLKLNP TEVLHGR >gi|289656169|gb|ADCS01000021.1| GENE 25 21388 - 22521 185 377 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163788031|ref|ZP_02182477.1| 50S ribosomal protein L9 [Flavobacteriales bacterium ALC-1] # 230 377 271 413 413 75 29 2e-13 MKKRTMYWRMVLGSLARRRSRMFTALLAIAMGATILSGLVTIYYDIPRQMGKEFRSYGAN MIVIPTDSDKKITNEQLEEIRRIIPANKLVGIAPYIYQNAKINEQPYMIAGTDLKQAREN SPYWLIHGKWPEKSREVLLGNEISKVIGLSAGDKVTINTPKDDGELTATDFTITGVVTTG GKEEELIFTSLEDLKAIISEENLDVVECSIEAEQGEIQKIVNDIAAADKELTPQMVKRVT ESQDIVLTKLQALIWIVTVIVLFIIMICVYTTMMAVVMERRKEIGLKKALGASNKSVVTD FLGEGVILGIAGGALGVSLGYVFAQQVSISVFARKVSFLWTLIPLTIIVSVIITVLACML PVSKAVDVEPALVLRGE >gi|289656169|gb|ADCS01000021.1| GENE 26 22532 - 23239 281 235 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225084369|ref|YP_002657150.1| ribosomal protein S16 [gamma proteobacterium NOR51-B] # 4 220 9 225 309 112 32 2e-24 MNILTLKDVSKIYGELKALDKINLNVEKGEWLAIMGPSGSGKTTMMNIIGCMDKPSIGEV ILEGQDISRLSPKELTVIRRDKIGLIFQQFHLVNYLTALENVMMAQYYHSMPDEEEAMMA LEAVGLKDRAKHLPNQLSGGEQQRVCIARALINHPALLLADEPTGNLDEKNEYLVMDIFE KLHNAGSTIIVVTHDPEVGDEAERMVVLEHGKIAREEKKKRQRPIITTNELKEFI >gi|289656169|gb|ADCS01000021.1| GENE 27 23239 - 23670 664 143 aa, chain + ## HITS:1 COG:FN1351 KEGG:ns NR:ns ## COG: FN1351 COG4939 # Protein_GI_number: 19704686 # Func_class: S Function unknown # Function: Major membrane immunogen, membrane-anchored lipoprotein # Organism: Fusobacterium nucleatum # 1 143 1 140 140 68 36.0 3e-12 MKKLALLMILIFVLAGCGNNKEQEESTISYKDGEYTAQSDPDDWGGKIVLRLTVKDGKIE TCEQDNLDSSGQEKNEEYGKIDGKISNPGLYKIAQGAVEATKEYPNMLIDKQDINKVEVI SGATVSHKCFTDAVNRALEDAKE Prediction of potential genes in microbial genomes Time: Fri May 27 07:31:06 2011 Seq name: gi|289656168|gb|ADCS01000022.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.22, whole genome shotgun sequence Length of sequence - 36336 bp Number of predicted genes - 34, with homology - 32 Number of transcription units - 13, operones - 9 average op.length - 3.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 1 - 75 98 ## 2 1 Op 2 . + CDS 79 - 1284 1021 ## COG0577 ABC-type antimicrobial peptide transport system, permease component + Term 1302 - 1355 11.9 + Prom 1303 - 1362 4.9 3 2 Op 1 2/0.000 + CDS 1479 - 2636 1190 ## COG1840 ABC-type Fe3+ transport system, periplasmic component 4 2 Op 2 4/0.000 + CDS 2637 - 3320 707 ## COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase 5 2 Op 3 . + CDS 3328 - 4299 1079 ## COG1136 ABC-type antimicrobial peptide transport system, ATPase component + Term 4304 - 4337 2.2 + Prom 4308 - 4367 14.5 6 3 Tu 1 . + CDS 4409 - 5899 1750 ## COG0008 Glutamyl- and glutaminyl-tRNA synthetases + Term 5908 - 5953 6.4 + Prom 6036 - 6095 7.8 7 4 Op 1 5/0.000 + CDS 6134 - 7165 1088 ## COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain 8 4 Op 2 26/0.000 + CDS 7155 - 8171 1484 ## COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase + Term 8184 - 8221 4.6 9 4 Op 3 13/0.000 + CDS 8229 - 9416 1527 ## COG0126 3-phosphoglycerate kinase 10 4 Op 4 . + CDS 9419 - 10168 781 ## COG0149 Triosephosphate isomerase 11 4 Op 5 . + CDS 10188 - 11471 1845 ## COG0148 Enolase 12 4 Op 6 . + CDS 11468 - 11875 453 ## TERTU_2513 phosphohistidine phosphatase SixA (EC:3.1.3.-) + Term 11965 - 12020 10.9 + Prom 11958 - 12017 5.3 13 5 Tu 1 . + CDS 12057 - 14906 2633 ## COG4932 Predicted outer membrane protein + Term 14907 - 14966 10.5 - Term 14903 - 14949 13.2 14 6 Tu 1 . - CDS 15002 - 16117 1293 ## COG0686 Alanine dehydrogenase - Prom 16140 - 16199 13.6 + Prom 16179 - 16238 11.3 15 7 Op 1 . + CDS 16304 - 17800 1489 ## COG0728 Uncharacterized membrane protein, putative virulence factor + Prom 17802 - 17861 3.3 16 7 Op 2 . + CDS 17881 - 18159 483 ## COG2388 Predicted acetyltransferase + Term 18163 - 18195 2.5 17 8 Op 1 . + CDS 18233 - 18928 883 ## BCE_0432 hypothetical protein + Prom 18933 - 18992 5.3 18 8 Op 2 . + CDS 19017 - 19955 1059 ## Ccel_0901 copper amine oxidase domain protein + Term 20008 - 20053 4.5 + Prom 20044 - 20103 13.5 19 9 Op 1 . + CDS 20127 - 22259 2746 ## COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases + Term 22270 - 22313 10.9 20 9 Op 2 . + CDS 22315 - 23475 1185 ## COG5438 Predicted multitransmembrane protein + Prom 23544 - 23603 10.6 21 10 Op 1 . + CDS 23639 - 23803 308 ## - TRNA 23640 - 23726 68.7 # Leu CAA 0 0 22 10 Op 2 4/0.000 + CDS 23838 - 26495 2868 ## COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains 23 10 Op 3 . + CDS 26482 - 27084 650 ## COG0237 Dephospho-CoA kinase + Term 27087 - 27120 1.3 - TRNA 27179 - 27264 55.0 # Leu GAG 0 0 + Prom 27448 - 27507 9.1 24 11 Op 1 12/0.000 + CDS 27548 - 28876 1639 ## COG4656 Predicted NADH:ubiquinone oxidoreductase, subunit RnfC 25 11 Op 2 12/0.000 + CDS 28888 - 29871 1057 ## COG4658 Predicted NADH:ubiquinone oxidoreductase, subunit RnfD 26 11 Op 3 13/0.000 + CDS 29872 - 30459 856 ## COG4659 Predicted NADH:ubiquinone oxidoreductase, subunit RnfG 27 11 Op 4 3/0.000 + CDS 30471 - 31067 964 ## COG4660 Predicted NADH:ubiquinone oxidoreductase, subunit RnfE 28 11 Op 5 12/0.000 + CDS 31069 - 31647 758 ## COG4657 Predicted NADH:ubiquinone oxidoreductase, subunit RnfA 29 11 Op 6 . + CDS 31658 - 32608 1303 ## COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB + Term 32625 - 32665 6.1 + Prom 32655 - 32714 9.9 30 12 Tu 1 . + CDS 32766 - 33278 598 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes + Prom 33398 - 33457 7.1 31 13 Op 1 8/0.000 + CDS 33487 - 34884 1543 ## COG0215 Cysteinyl-tRNA synthetase 32 13 Op 2 1/0.000 + CDS 34869 - 35294 240 ## PROTEIN SUPPORTED gi|163764762|ref|ZP_02171816.1| ribosomal protein S13 33 13 Op 3 1/0.000 + CDS 35284 - 36051 1074 ## COG1351 Predicted alternative thymidylate synthase 34 13 Op 4 . + CDS 36048 - 36335 181 ## PROTEIN SUPPORTED gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 Predicted protein(s) >gi|289656168|gb|ADCS01000022.1| GENE 1 1 - 75 98 24 aa, chain + ## HITS:0 COG:no KEGG:no NR:no ISGATVSHKCFTDAVNRALEDAKE >gi|289656168|gb|ADCS01000022.1| GENE 2 79 - 1284 1021 401 aa, chain + ## HITS:1 COG:FN1349 KEGG:ns NR:ns ## COG: FN1349 COG0577 # Protein_GI_number: 19704684 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Fusobacterium nucleatum # 2 399 3 399 401 300 37.0 3e-81 MKELNVIGLAKKNIANKPARTYGMMVLTGILCFILFMSSFLILSLKNGMTSLSNRMGADI IVVPEGYDSKITGAILRGEPNSFFLDEAVTDRVRSIEGVEQASPQLFLATLSAGCCSFPI QIIGIDFEQDFIVSPWLEKQVKLPLKEGQVVVGNNIVGDYQSNVRFFNQPFEIQGRLAKT GMGFDNTVFMTMEETKRLAKEYEKILGHPISKQENLISSVMVKVKGGVNPKDVFKKLADE FKGEQIYPLLAKQMMTQVSDNMQSLLTYIYALIALLWILAFFILTLVYSISIKERKREFA MFRILGATKKKLKSICLAEILMINMTGAVFGSVFSFIISLLFGKALSLSFKMPFLSPNII GLFSVLLFTILAGSLLGPLASIVALNKMEKQEMGLLLREND >gi|289656168|gb|ADCS01000022.1| GENE 3 1479 - 2636 1190 385 aa, chain + ## HITS:1 COG:FN0128 KEGG:ns NR:ns ## COG: FN0128 COG1840 # Protein_GI_number: 19703473 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+ transport system, periplasmic component # Organism: Fusobacterium nucleatum # 84 384 5 311 314 192 30.0 9e-49 MNLNRDVYSLCMENSELKDFLIMKGFDNLKNPAAFKLMAKMIKLKDALKLKGISAELFVE EYERYIGKFEMQEEILNNNTAKYTVAGAVPCPIKVPLIDLLNDYNEKNDISNIKYDFRSA NLGLDFVIDNLKSGKDLPDLITSAGYELILNKEISNRIESEYYAPEIEFNSEILERIENI KDPENRFNIIAIVPAVFIVNKRELAGRQIPKSWSDVLSEEYAQSMTIPVGDLDLYNALVL TIYSKYGEDGLMKLKNAVASSMHPSQMVNGTRNKTACVSVAPYFFASLVQSDELEVIWPE DGALVSPILICVKKGSAEYIKATLNYLLSEEVGSVFSNNGKFPVTTNNLKNQFSKEQKLI FAGWELLNNIDEHIEIINKYFKLGD >gi|289656168|gb|ADCS01000022.1| GENE 4 2637 - 3320 707 227 aa, chain + ## HITS:1 COG:FN0129 KEGG:ns NR:ns ## COG: FN0129 COG0378 # Protein_GI_number: 19703474 # Func_class: O Posttranslational modification, protein turnover, chaperones; K Transcription # Function: Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase # Organism: Fusobacterium nucleatum # 1 226 1 226 231 345 72.0 5e-95 MKMITFSGPPSSGKTSVIIKTISNLKRKNIKTGVVKFDCLYTDDDLIYEKAGIPVKKGLS GGLCPDHFFVSNIEEIINWAKLLELDMLITESAGLCNRCSPYIKNILAICVIDNLSGINT PLKIGPMLRSADIVVITKGDIVSQAEREVFASKVQTVNPRAVVINVNGLSGQGGYELSYL IESRANDIEDEKNMKLRYPMPTALCSYCLGETRVGEDYQLGNVKKIK >gi|289656168|gb|ADCS01000022.1| GENE 5 3328 - 4299 1079 323 aa, chain + ## HITS:1 COG:FN0130 KEGG:ns NR:ns ## COG: FN0130 COG1136 # Protein_GI_number: 19703475 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, ATPase component # Organism: Fusobacterium nucleatum # 72 322 8 259 268 309 65.0 4e-84 MTIREILDKYPFMDNFFLSNELNIENSKEKTFHEYLCSLTEQQVEELGVPIEIIEDNFNE FLNQMLRFLGEDNQLKSLTILSGYDKNGKKESFDKLILKPSDVVSIVGPTGSGKSRLLAD IEWIARADTPTGRKILINDEEIPTEKRFSGNEKLVAQLSQNMNFVMDLTVREYIELHAKS RLVDPEDKMDLIIKDANNLSGEGFDLDTYITSLSGGQSRALMISDTANLSSSPIVLIDEI ENAGIDRKSAIELLMRRDKIVIMATHDPMLALMADKRIVIKNGGIDKIIESTEDERQILR KLSEIDNFVNDLRNKLRHGEKLY >gi|289656168|gb|ADCS01000022.1| GENE 6 4409 - 5899 1750 496 aa, chain + ## HITS:1 COG:BS_gltX KEGG:ns NR:ns ## COG: BS_gltX COG0008 # Protein_GI_number: 16077160 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glutamyl- and glutaminyl-tRNA synthetases # Organism: Bacillus subtilis # 3 485 4 481 483 406 44.0 1e-113 MEEVRVRFAPSPTGFLHIGGLRTALYNYLYARKNNGKFILRIEDTDRTRFVDGAIENLVN ALKWAGIDYDEGVFFENGEVVEKGEYGPYIQSKRLDIYKKYVDELIEKDMAYYCFCTKER LDHVREEQRIKGQVPKYDGFCRGGSLDEAKKRIANGEDYVVRLKLPRNTNITFEDAVRGK VTINTDEIDDQVLMKSDGFPTYHMAVVVDDHLMGITHVVRGEEWLPSTPKHVFLYEALGW KAPQFVHLPTVLNKDRKKLSKRQGDVSVEDFRQRGYLPEGLDNYLALVGWSPEDGEEIMT LEQMIEKFTFDRVGKSGGIFDKEKLNWVNAHYIKEYSTEEIAKLSAAYMVEANLMTEEEI NKKWDWYVLLIETVKESLSVLCEVPEKVKFLFGDLDITEDDAKEELSGEQVPQLIEAFKE QLDTIEEVDLEFANTVMKKIQKATGIKGKQLFMPVRAAISGNVHGPELKNIIYLLGKNEL LSRLEKAKNYTKNITE >gi|289656168|gb|ADCS01000022.1| GENE 7 6134 - 7165 1088 343 aa, chain + ## HITS:1 COG:CAC0708 KEGG:ns NR:ns ## COG: CAC0708 COG2390 # Protein_GI_number: 15893996 # Func_class: K Transcription # Function: Transcriptional regulator, contains sigma factor-related N-terminal domain # Organism: Clostridium acetobutylicum # 3 339 5 342 344 212 35.0 8e-55 MDLKLLTQFLPEVHDLFITRYEILSYISRNGKVGRRTIAQNMNLSERVVRDEIDKLKSQG LIFVNSSGIEIEPEGTKLLSKFEMDYRELNNLRSLATQVESMLNVKSVIVVESGFEHTET VKNLGIQAAIIFENMMTEGDLVGVTGGETISNVADEITSREQPYNVTILPARGSVGNQAR FQANTIASRIANKLNAKLQLLPIPETVSKEAMKIFLSDDEMREAYELLKNLNMLVFGIGR ADVMLKRRGMSEEKKTEVLNLGAVSEAFGNYFNIEGQRVYSQESVGISLEKFLSIPKILG VAGGEEKARAIISISKLRPDMVLVIDESLAHSIIKILGGNYVS >gi|289656168|gb|ADCS01000022.1| GENE 8 7155 - 8171 1484 338 aa, chain + ## HITS:1 COG:BH3560 KEGG:ns NR:ns ## COG: BH3560 COG0057 # Protein_GI_number: 15616122 # Func_class: G Carbohydrate transport and metabolism # Function: Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase # Organism: Bacillus halodurans # 1 335 1 331 335 362 56.0 1e-100 MSVKVAIMGFGRIGRDVLRGWSLRENTGYEICYIADLKATERIKEHAHLFEYDSIYRRYP GEVKVVEDGFTINGKKITVLDGKAPAEMNWGELGVDIVIESTGAFTQREKAEGHIAAGAK KVIITAPAKGEDITIVMGVNDNKYDSAVHNIISNASCTTNCLAPVTKVILENFGIERGLM TTIHAYTNDQKIHDAIHKDMRRARMGAENMVPTTTGAAQAVAKVIPEVEGILTGMAVRVP VPTGSIVDVTFEISKAATAEEINAAIKKATENELKGVLEYSEEDLVSSDIVQNPHSSIFD AKLTLVKDRLVKCISWYDNEWGYSQRVVDLTAKVAGLL >gi|289656168|gb|ADCS01000022.1| GENE 9 8229 - 9416 1527 395 aa, chain + ## HITS:1 COG:TM0689_1 KEGG:ns NR:ns ## COG: TM0689_1 COG0126 # Protein_GI_number: 15643452 # Func_class: G Carbohydrate transport and metabolism # Function: 3-phosphoglycerate kinase # Organism: Thermotoga maritima # 2 395 3 397 399 421 56.0 1e-117 MKKTLKSFDFRDKKVLVRADFNVPLKNNIITNDDRIVKSIPTIEYIIENGGSVILLSHLG RPKGKYAEEFSLLPVANRLEEILGRKVKFIASEEVVSDSVISEIKELKSGEVALLENTRF VAGEEKNDDEFARKLASLADIYVNDAFGTSHRAHASNVGVSKYLPSALGLLVEKEVKYIS GALKNPQRPFIAIIGGAKVSDKIGVIENLLDKVDKIVIVGAMAYTFLKAQGYETGKSLVE NDKLELASALIKKAEIKKVKLILPIDSIVVPEIKEGVVSKAADYNLMPKDLMGVDIGPKS IKLIVEELKDAKTVVWNGPAGVFEIDDFAKGTFAIAKALAELDGAITIIGGGDSASAIEK SGVEDRISHISTGGGASLEMLEGKNLPGIDAIEEE >gi|289656168|gb|ADCS01000022.1| GENE 10 9419 - 10168 781 249 aa, chain + ## HITS:1 COG:BH3558 KEGG:ns NR:ns ## COG: BH3558 COG0149 # Protein_GI_number: 15616120 # Func_class: G Carbohydrate transport and metabolism # Function: Triosephosphate isomerase # Organism: Bacillus halodurans # 1 245 1 247 251 217 46.0 2e-56 MRKTFIAGNWKMNLNRTDTVKMLEELVKIKLDDNIDALICPPFTSICAASDVLKNSKIKL GAQTVSEYDDGAYTGEVSTNMLKDLGVSHVILGHSERRSYFGETNKIVNAKIKRALSEGL DVILCVGENQAQREENIHEEVVREQVEKSLEGISEHIEKITIAYEPVWAIGTGNTCKSED AQSMCKFIRDTFKNMFSEKLSEEVRILYGGSVKPANIKELMLNEDIDGALVGGASLKSED FSKLVNYNA >gi|289656168|gb|ADCS01000022.1| GENE 11 10188 - 11471 1845 427 aa, chain + ## HITS:1 COG:BS_eno KEGG:ns NR:ns ## COG: BS_eno COG0148 # Protein_GI_number: 16080443 # Func_class: G Carbohydrate transport and metabolism # Function: Enolase # Organism: Bacillus subtilis # 1 427 1 430 430 598 73.0 1e-171 MSYISDVYAREVLDSRGNPTVEVEVYTEEGGFGRAIVPSGASTGVHEAVELRDGGDRYLG KGVLKAVTHVNEIIAEEIRDFDCFDQVGIDEFLIELDGSENKGKIGANAILGVSLAVARA AADELGLPLYEYIGGVNAKTLPVPMMNILNGGEHADNNVDIQEFMIMPVGAKNFAEALRM GATIYHNLKSVLRDKNLSTGVGDEGGFAPNLSSNREALDVIVDAIKKAGYVPGDDVVLAL DVAASEMYEDGTYNMKGEGKKFNSAELVNYYKELIENYPIISIEDGLAEDDWAGWKYMTD EIGSKVQLVGDDLFVTNTKRLERGIKEGVSNSILIKLNQIGTLTETLDAIELAKENNMTA IISHRSGETEDSTIADLAVATNAGLIKTGAPARSERVAKYNELLRIEDQLGDCAKYRGHK SFYNLKK >gi|289656168|gb|ADCS01000022.1| GENE 12 11468 - 11875 453 135 aa, chain + ## HITS:1 COG:no KEGG:TERTU_2513 NR:ns ## KEGG: TERTU_2513 # Name: sixA # Def: phosphohistidine phosphatase SixA (EC:3.1.3.-) # Organism: T.turnerae # Pathway: not_defined # 1 117 1 119 153 65 33.0 5e-10 MSVYLIRHGIAQNFADTDFERELTTEGRIKLRDTFEVFADEIGKIKIKVYSSPLIRAVQT AEILCDFLNCEFEISDWLGYESYVDRVRKLKEDKDINYILVGHEPNISDCIYRITGKVEI ISRGSIHIIKNAEIK >gi|289656168|gb|ADCS01000022.1| GENE 13 12057 - 14906 2633 949 aa, chain + ## HITS:1 COG:lin0203 KEGG:ns NR:ns ## COG: lin0203 COG4932 # Protein_GI_number: 16799280 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted outer membrane protein # Organism: Listeria innocua # 5 435 9 429 586 76 26.0 3e-13 MKKSKNLKKLISFLLVFVILLGFLPTQVVLAEGAEINGEVTEFTVTNADGFVEPNGYIAN QIFRLNYKWKATNNGNELNEGDYFEMDLPEKFNFPTEAHYCNFDIEEEGKVVAKVTITPQ QPGGGKMKVTFTDFVKGKFGITGEMHLTARWNQNTYPITGVTEHDIVVGSITAKIKIKPY IPPNYATEVIYKTSGQTLTAEGWVRWRIRVNAKQGTLKNAVIKDTLKVADPGSPDGIEYV DGQFMLYELVWENGKLVEKNPQNISNQINLSADKRSFTYNFGDLDGKGYIIHYRTTYKQG LLLQNKVVLTSDEENPNPSYGQFVDAQSGGGIQGLLSRIKITKVAADDDMVKLEGAKFKI TRKETGGSVELFTNAQGEAISMPLIPGEYKIEEIEAPAHYVKDEAEYTVTVSADQAVEKT IQNKPEKTEVKVKKEWIGFEGSAVTVVLYANGAKVGEQKLTAPGWTYTFENLRKYDKNTG DEIKYTVTEEPTPTGYESSIKKEENVENSFVITNKQKTIDIKGEKTWDDNNNQANKRPQS ITVILSANGHPIQNPEVKPDANGKWTYSFEGLQEYDDQGNKINYTIKEEPVPGYTSEVKG YDIINHIVGKASVSVTKVWEGVTGNHPTIKLQLLKNGKSEGAPVELPNGTTAHTWKDLEK TDAAGKEYIYTVHEVGEKDGKVKLGNNWYKVSYEKDSTGNFIVKNIYNETPTKRTVYKVT GTIPRLNKKDHFAYIVGYPDNTFRPENTITRAEMSAIFARLLENQIFLGKTESSPYTDVM MGQWHTEYILKLSKLGIIKGYEDGNFKPNNLVTRAEFAAVASRFVDNKKQAAAFTDVSSH WARESIEKIMGQGWITGYEDGSFKPEQAITRAEVVSIVNKMLDRTADKEYVDNHTVGLLT YTDLAKDHWAYYPVAEASNGHEYERTSDGKEHWIRHWTAWEQAGRIQPK >gi|289656168|gb|ADCS01000022.1| GENE 14 15002 - 16117 1293 371 aa, chain - ## HITS:1 COG:BH2329 KEGG:ns NR:ns ## COG: BH2329 COG0686 # Protein_GI_number: 15614892 # Func_class: E Amino acid transport and metabolism # Function: Alanine dehydrogenase # Organism: Bacillus halodurans # 1 367 1 366 378 385 54.0 1e-107 MIIGVLKEIKEQESRVSCTPYSVNELIKSGHKVYLEKDAGLASGFSNEDYERNGAIVFDT AEEVWTKSEMIYKVKEPIECEFKYLREGLIIYSYLHLAADEKLANELLKKKCISIAFETI QIGKLLPLLKPMSEVAGRMAVQEGAKFLTKPQGGKGVLLQGVPGVVPAHVVIIGAGVVGT AATRMAVGMGARVTVIDIDVERLGVLCDIFGGVIETLYSTPHNIASAVKSADMVISTILI PGRKAPKLVTEEMVKTMEAGSVIVDVAIDQGGSTETTAGRATTHNNPTFVKHGVIHYAVT NIPGAVARTSTYALSNATTKYAKIIADLGWVKAVKKHDDIKKGINTYDGKITYKAVAESL NREYSDILDLI >gi|289656168|gb|ADCS01000022.1| GENE 15 16304 - 17800 1489 498 aa, chain + ## HITS:1 COG:CAC3047 KEGG:ns NR:ns ## COG: CAC3047 COG0728 # Protein_GI_number: 15896298 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein, putative virulence factor # Organism: Clostridium acetobutylicum # 1 460 10 471 520 189 31.0 1e-47 MKTSYILMIVTIISKIFGLAREKALAYFFGTSLVADVFIVAFRIPMTFTNVVSGTTANGF IPIYNDIAQSNGEENAKKFTSNLSNIVFLFTFVLSIFGIIFAKPIVNIMAIGFDTQELEL CIFMTRVSMFSICSTSVFSIFKAYLQIKKSFVVSICHSIIMNLIIMASMAFAYKFGKEYL AWGILTAFIFQYVIFLPYIRKHGYRHFKLIDFKDENFIKMLKIILPVLISTSVIELNFII SNSLASSLPGAISKLNYAYKLQSFVTGIVITSITTAVYPEMARLGAKKDYDGLKLSIADS IITMLLLVVPASVGLFLFSEPIVKILFVGGAFSKQDATSTAIILSLYAIGIIGIGFREII SRVFYTIMDAKTPVINSVVMVAINVVLSFILINNLGPRGLALATSISFMAGAVLILISLR KRMGRIFSADTVREIIKIIIATAVMGIVSKFCYIFLSKGMGNLIAFLISVIAAGTVYLIM LVLLKVKEVRNIIGKIKK >gi|289656168|gb|ADCS01000022.1| GENE 16 17881 - 18159 483 92 aa, chain + ## HITS:1 COG:SA2309 KEGG:ns NR:ns ## COG: SA2309 COG2388 # Protein_GI_number: 15928100 # Func_class: R General function prediction only # Function: Predicted acetyltransferase # Organism: Staphylococcus aureus N315 # 1 87 4 90 94 67 39.0 5e-12 MELKNGKNSIYIGNSEEDYEATIQFRKIKDGVVEVYHTGVGEKLKGQGIAGKLVDALVER AKEENFKVIPTCSFADKKMNENCEYKEFIYKE >gi|289656168|gb|ADCS01000022.1| GENE 17 18233 - 18928 883 231 aa, chain + ## HITS:1 COG:no KEGG:BCE_0432 NR:ns ## KEGG: BCE_0432 # Name: not_defined # Def: hypothetical protein # Organism: B.cereus_ATCC10987 # Pathway: not_defined # 15 223 20 226 231 93 30.0 7e-18 MKNAVYRENGLEYVFLDESYLEELLDFTDDVCSRIEDVKTFARDTREDFMYVFSGNGKIL GVFLDDKLVAYRNMGIIPYEESLAVGIKPVEIPREKIVQHDAVLVHEVARGKNIQNITRK ILEKSLENEGYNYYMSTVAPSNIYSLRNTINNGFVIVGLENKYADEENVDGLIRFIFYKS KHEKLEYSKEEVFIPIHNYEEIRNILSQGYVGTELEDDRIKFVKLNKKVTK >gi|289656168|gb|ADCS01000022.1| GENE 18 19017 - 19955 1059 312 aa, chain + ## HITS:1 COG:no KEGG:Ccel_0901 NR:ns ## KEGG: Ccel_0901 # Name: not_defined # Def: copper amine oxidase domain protein # Organism: C.cellulolyticum # Pathway: not_defined # 2 309 4 318 338 81 27.0 5e-14 MKKIIASALILSLVLIPAVNTHAVEIKNKSSMVMENEERETEQYISYDGEIKSIEKNDNG LSLKTELKNDKGEKIEYIFNVEKDTKIFNDKTLKRIEAKTLKEGDKVTAFHSADIAIAAI YPARIPSEVLVLNADKNNLEKSICKFNKDYVCKDELQITGFKNTEIVWQDGTKATKEDIV DKKVLVFYDKATLSLPAQINPLKIIILEDKAETLYKNEIQVGKNKIGFNSEILEKDGVKL YPLREIFENMGAKIDWNAKEREITIKTKSKDTKIINLKKNTLKINNKEIELVMEYTIENG KIYVPIGMFSTN >gi|289656168|gb|ADCS01000022.1| GENE 19 20127 - 22259 2746 710 aa, chain + ## HITS:1 COG:CAC0353 KEGG:ns NR:ns ## COG: CAC0353 COG0737 # Protein_GI_number: 15893644 # Func_class: F Nucleotide transport and metabolism # Function: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases # Organism: Clostridium acetobutylicum # 212 692 33 523 1193 212 30.0 2e-54 MKNKKRYLSLVLTLVLVFSTFTGVFAKEVEDSVVKLQEVKLLDKENNTEAKLHSDLTRAE GLTMVLKAIGYSQEVAEGEKYVKLNPFKDVADWFKGYAGLGYDLNLTKGKSEDAYDPNSN LSKREFIAFILRALDYNKDKAYKDADQIGKKIGLLSADDDINSKITKAQAAKYIFSALNK ELQDGTGYTLGEYLVKTKVVSEEKAKEVGIVLGAKDDKSINILYFNDFHGNIAEEITGKK RNMGMAKMVGYVNEFIEKHPNTIVLSGGDNYQGTADSNLTMGKPVTAMMKGMNTTASAVG NHEFDWGSDKIADWGKNGNFDYLASNIYDTAKNTPVDWAKPYMIIQKGNIKIGLIGLAHP DTPTLTKAEYVKGFEFRDPVKSAQEWVNFLQEGKAKEGKPDVIIALTHIDSDQSKTGEIT GNATKLATEVKGLDCILSAHSHRTVSGKVNGVPILQAYCYGRAIGQVNIKVDNGKVSSID TQIFQGNQIKDKIIVDTQTDKFYSDLQKELAPIKGEVLGEAKGEFTHDRSAKGTVSLLGR WACEVMAEKTNAQIGIQNGGGLRRTLNAGKITMGDLYEIMPFDNYLVVMDLPGDALIKAI DHGINMPETTDGAFSGLKVEYDASKPYEQRITKITLTDGTPIDPQKTYKVVVNDFMFTGG DGYDFTKAQNVNETYIPIRDVLVESIKQSKTITPKAIDFILDVTSAKKAA >gi|289656168|gb|ADCS01000022.1| GENE 20 22315 - 23475 1185 386 aa, chain + ## HITS:1 COG:CAC2436 KEGG:ns NR:ns ## COG: CAC2436 COG5438 # Protein_GI_number: 15895701 # Func_class: S Function unknown # Function: Predicted multitransmembrane protein # Organism: Clostridium acetobutylicum # 76 382 78 385 400 202 42.0 8e-52 MKKTIILLVLFLLVPSLISAKELSSDEEIRSYYESQMNDNSYTVAKAKIEKIVYDDTKEV REIPIEADIRYQHLEIEILTGKHKGEKLTIRHTIERIMPGHYIFKDGDKILLRITEDDDI IDTVKIQEKVRDTKIYFIVGLFVILLLVIGRMSGFKTLISLIFTIAIIIFGYIPLIINGF NPILASLIISIISISITLLIISGKNKKTYVAILGTSLGVIVSGILAYMFGKFACLTGLSS DNAISLAYIPQFRNLNYQGILFGTILIGAIGAIMDVSISIASALWELKEVNHNITKKEMM SSGMNIGRDIMGSMSNTLILAYVGTTLHLIILFIVYRIYFIEIINLDSIATEIIRAMAGS IGLIITIPLTVLVGANIYLNNKKEKE >gi|289656168|gb|ADCS01000022.1| GENE 21 23639 - 23803 308 54 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MVPKAGLEPARCCHRQILSLVRLPIPSLWLITIIIYHFFANKSREIFASISDII >gi|289656168|gb|ADCS01000022.1| GENE 22 23838 - 26495 2868 885 aa, chain + ## HITS:1 COG:BS_polA_2 KEGG:ns NR:ns ## COG: BS_polA_2 COG0749 # Protein_GI_number: 16079961 # Func_class: L Replication, recombination and repair # Function: DNA polymerase I - 3'-5' exonuclease and polymerase domains # Organism: Bacillus subtilis # 364 885 41 560 560 468 49.0 1e-131 MKKKILIIDGSSLFFRAFYALPLLKTKRGIYTNAIYGFIMMLENAISKINPNNVVVCFDM KGKTFRSDIYKDYKGTRQKTPSELEQQFPIVREILSLMNIKTLESPIYEADDIAGTISLI ASENNYESILLTGDKDYFQLVDDNTKVLLTRKGITDLEIISVESIEESYGINPKQFIDLK GLMGDNSDNIPGVPGVGEKTALKLIHEYSNIENLYDNIDNISGKKLKENLETNKMQAFMS KKLGTIVRNVPLDMEIDDFAYADYNFDELSKLYREYEFNSLLQRLPVEYQKENIVETSSD DFEYRNMSIDDIIFEIKNSKSFAFKIISDGKIYEGIMPNFIAIKVQNEATCIIKIDCKED ILKFKDVFEDENIEKLGHNLKEDMITLLNFDINIKNYTHDSEIAEYILNSTESNYDINNI SNTYFSRGYKDLEELLGKGKKKIKFSDLKYDELCKYFSFYLNSVYKLRDVQLEKIRKQEM DDLYFEVELPLIEVLSSMELIGIRTDNAILDEIGIDLDNKILNLENDIYEKAGEEFNINS PKKLGLILFDKLGYPVLKKTKTGYSTNADVLEKLKKDGDIIDDVLEYRKLAKLKSTYVEG LKELINVATGHIHSHFNQTITSTGRISSTNPNLQNIPIKTDEGKLIRKAFLSSEGCVLVD ADYSQIELRVLADISKDENMISAFENDDDIHRRTAAKVFGVDFEDVTPSLRSRAKAVNFG IVYGISDYGLSQNLNIPRKLAQEYIENYLLTYDGIKNYMTEEVKLAKKNGYVKTILNRRR YIPELSAKNFNIRSFGERIAINTPIQGSAADIIKIAMVKVYRALKENNLKSKLILQIHDE LIVDAREDEVETVKKLMRNIMENAVEMVVKLKVDMQTGSSLYDSK >gi|289656168|gb|ADCS01000022.1| GENE 23 26482 - 27084 650 200 aa, chain + ## HITS:1 COG:SPy0498 KEGG:ns NR:ns ## COG: SPy0498 COG0237 # Protein_GI_number: 15674604 # Func_class: H Coenzyme transport and metabolism # Function: Dephospho-CoA kinase # Organism: Streptococcus pyogenes M1 GAS # 7 192 2 186 197 112 36.0 5e-25 MTQNKKVIAITGSIATGKSLATDILREMGYFVVDADSIAHEILEEDLILNEIKDAFGVEF FKDGKLNRKKLADYVFGNKERLEILNNITHKRVFEKINFEIKKSSEKLIFVDIPLLIELR GELYKYDFKPDMIWLIYSNKAVQLRRLMQRDSIDEVYALRKINSQMSVEEKKKYSDIVLI NENSVEDLKIQILNEIEKLK >gi|289656168|gb|ADCS01000022.1| GENE 24 27548 - 28876 1639 442 aa, chain + ## HITS:1 COG:FN1596 KEGG:ns NR:ns ## COG: FN1596 COG4656 # Protein_GI_number: 19704917 # Func_class: C Energy production and conversion # Function: Predicted NADH:ubiquinone oxidoreductase, subunit RnfC # Organism: Fusobacterium nucleatum # 11 441 14 441 441 316 39.0 5e-86 MSSRNLTFSVGGVHMDEHKTLTEHVPIERMPDPEIVYIPMSQHIGAPCSPVVKKGDIVKV GQVVGNSEAYISAAVHASVSGTVKSIEKMYTADGRYCDCVVIENDGKNEVVEPDPMLNYR EKSMDEIISFVKNKGLVGMGGAGFPLHAKLRSENPGLDECVINGAECEPFLTCDHRIMVE KTEEVLSGLEIFADFYNKVSYMAIEENKPDAIEIMEKKIHENPKWSNLKVVGCQTKYPQG DSKRLSEAVLNRIVPQNGVTNDVGVFLTNVGTTLAFYEAMIEGRSSYERVITVSGSGINI PKNILVKIGTPVKDIIDFCGGLKDNFIEIICGGPMTGKSVFDLNSPITKTTSGLLIFTDE EIENTKETPCIRCSRCVDHCPANINPTDINAAILKGNVDFCDELHADQCMECGICSFVCP AKRNLTQSVKLAKREIKSRVKR >gi|289656168|gb|ADCS01000022.1| GENE 25 28888 - 29871 1057 327 aa, chain + ## HITS:1 COG:FN1595 KEGG:ns NR:ns ## COG: FN1595 COG4658 # Protein_GI_number: 19704916 # Func_class: C Energy production and conversion # Function: Predicted NADH:ubiquinone oxidoreductase, subunit RnfD # Organism: Fusobacterium nucleatum # 23 324 10 307 314 222 40.0 6e-58 MENKKIVKEPATLKGNEFFVSLAPHLRSKDSVQRIMLDVIIALIPALAGSVYFFGLRALM LVMICVISCVATEYVFQKFMHKEIQIADLSAVVTGILIAFNLPATAPWWMAAFGSIFSIA VVKECFGGIGCNFMNPALAARIVIMASWAKKMTDYVAPVRQVAVDAATSATPLQLIKAGD FTNLPALKDMIIGNISGVIGETSAILLLIGGIYLVVRGVINFRIPLVYVITTIVFLFIFG IPAEIIPYEVFGGGLFLGAIFMATDYTTTPMNNRGKIIFALGCGIITAVIRVKGSLPEGV SYSICLMNVATPLIDKLTRTSAYGEAK >gi|289656168|gb|ADCS01000022.1| GENE 26 29872 - 30459 856 195 aa, chain + ## HITS:1 COG:FN1594 KEGG:ns NR:ns ## COG: FN1594 COG4659 # Protein_GI_number: 19704915 # Func_class: C Energy production and conversion # Function: Predicted NADH:ubiquinone oxidoreductase, subunit RnfG # Organism: Fusobacterium nucleatum # 5 187 6 171 177 72 31.0 6e-13 MKEPVKFGIILLLFCALSAGLLAVVNGFTAPIIAQAELESTLESYKVIFGETADEFEEYD QQKLAEIQKVYPEVLNIFVATKSGEVVGYGINVTTSGFGGAMTNAIGIISESDRIAGFRN IVNAETKGFGTQIEEEKYYSSYNDKSATGELKINISPEAEDEVLQISGATVTSKAVLVGD NIALSAYNEFLKENK >gi|289656168|gb|ADCS01000022.1| GENE 27 30471 - 31067 964 198 aa, chain + ## HITS:1 COG:TM0247 KEGG:ns NR:ns ## COG: TM0247 COG4660 # Protein_GI_number: 15643019 # Func_class: C Energy production and conversion # Function: Predicted NADH:ubiquinone oxidoreductase, subunit RnfE # Organism: Thermotoga maritima # 2 196 3 193 200 157 46.0 1e-38 MKLRQVFINGIIKNNPIFMQLIGLCSVLAITNTLQSAIAMGIAVTFVLIMSNGVVSILRN VIPDKIRIPCFIVVIATFVTLVQMVLHAYAPAIYGALGIFLPLIVVNCCILGEAEGFAYK NKLIPSLVDGLGTGFGYTLAVVSMGLIRELFGYGTLLEKQILPASYPGIGLMGAPAGAFI LLGFLIAGFKRILANRGE >gi|289656168|gb|ADCS01000022.1| GENE 28 31069 - 31647 758 192 aa, chain + ## HITS:1 COG:FN1592 KEGG:ns NR:ns ## COG: FN1592 COG4657 # Protein_GI_number: 19704913 # Func_class: C Energy production and conversion # Function: Predicted NADH:ubiquinone oxidoreductase, subunit RnfA # Organism: Fusobacterium nucleatum # 20 191 21 192 194 195 63.0 3e-50 MLNNIITILVSTILVNNYIFAQFLGICPFLGVSSKTETAVGMGVAVTFVVVIASAITWCL QVFILNKFGLEYLQTIVFILVIASLVQFVEMVIKKTSPALYTAMGVYLPLITTNCVVLGV TVLNVQNGYNLIETVFSGLGASIGFTLALVLMSTLRERLAFANVPKALQGVPIALISAGL MALAFSGFSGLV >gi|289656168|gb|ADCS01000022.1| GENE 29 31658 - 32608 1303 316 aa, chain + ## HITS:1 COG:MA0664 KEGG:ns NR:ns ## COG: MA0664 COG2878 # Protein_GI_number: 20089551 # Func_class: C Energy production and conversion # Function: Predicted NADH:ubiquinone oxidoreductase, subunit RnfB # Organism: Methanosarcina acetivorans str.C2A # 5 261 4 261 264 180 43.0 4e-45 MDFKLIILPMIILAVIGAIFGVVLSIASKVFAVKVDEKVAAVRDVLPGANCGACGFPGCD GLAQAIAEGKAPVTACAIGGKEVADCIADVMGVNAGNVDKMVANVLCQGTCGKAKEKYNY NGLVDCRLISDFQRGSKSCNYGCVGGGTCVTVCEFDAIHIVDGVAKVDKEKCVACKKCIE ICPKHLIDLIPYKAKTVVDCHSNDVGKDVRVNCSVGCIACKLCEKNCPKDAIHVVDNLAR IDYTKCINCGICVSKCPTGAIFCEYPERVEKMKERQRLEAEKKKQELLEAKRAQQEAAEK ANAEIVNSDTKEKVLN >gi|289656168|gb|ADCS01000022.1| GENE 30 32766 - 33278 598 170 aa, chain + ## HITS:1 COG:lin0387 KEGG:ns NR:ns ## COG: lin0387 COG0494 # Protein_GI_number: 16799464 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Listeria innocua # 3 161 2 160 169 90 36.0 2e-18 MAEFWDIYNKQGKKKNKVIRKGQPLLNGEYHLIVEGWIRCGEDTFLIQKRSANKKLFPNM WYCSLGGSVQAGEDAKQGLIREAKEELGIDISNDLIKLKRIITENYCIFYIYLIERDIDL KEIVLQKEEVADVKIATKSEICDLIKNNEMIYLDYYQKFFENIEKVPYLR >gi|289656168|gb|ADCS01000022.1| GENE 31 33487 - 34884 1543 465 aa, chain + ## HITS:1 COG:CAC3177 KEGG:ns NR:ns ## COG: CAC3177 COG0215 # Protein_GI_number: 15896425 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Cysteinyl-tRNA synthetase # Organism: Clostridium acetobutylicum # 1 463 1 460 464 493 53.0 1e-139 MRLYNTLTRKKEEFKPLKDGLVTMYNCGPTVYNYIHVGNARPLTVFDTLRRYFIYKGLDV KFVVNFTDIDDKLINKANAEGITVAEVAERYIKEFKVDANGLHLYDYETLNPRATEHINQ IIDFIQILIDKNAAYVSEGDVYFDINSAKDYGKLSHKKLEDLISGARVDVSDIKKNPADF ALWKAKKEGEPYWTAPWGEGRPGWHIECSVMAKTLLGETIDIHSGGEDLQFPHHENEIAQ SETCNGVPFAKFWLHNGMITVDNEKMSKSKGNFFTVREVSEEFNLEVLRFFLLGCHYRSP INFSREIMEQTKNGLERIYNAKYKLEEFLENCIDREFSDEDKKQLGIIADEIKFFEESME DDINTADAITAIYNIVKFINIELNEDSNKKLVDEIYNTLLRLSKVLGILELERENIDEEV ERLIKEREDARKNKDFKRADEIRDILASKNILIEDTRTGTKWKRA >gi|289656168|gb|ADCS01000022.1| GENE 32 34869 - 35294 240 141 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764762|ref|ZP_02171816.1| ribosomal protein S13 [Bacillus selenitireducens MLS10] # 17 132 8 126 141 97 43 1e-19 MEESLKFLALSKKYDENSIRELSPLALAFLGDAVYELLVRTYILSENKNPKKLHIEAISY VKAKAQANSIHNILDSLTEEEIAIYKRGRNAKSHTMPKNADVLDYREATGFECLFGYLYL LDRGSRILELFKKMEGNKNEG >gi|289656168|gb|ADCS01000022.1| GENE 33 35284 - 36051 1074 255 aa, chain + ## HITS:1 COG:PH0762 KEGG:ns NR:ns ## COG: PH0762 COG1351 # Protein_GI_number: 14590631 # Func_class: F Nucleotide transport and metabolism # Function: Predicted alternative thymidylate synthase # Organism: Pyrococcus horikoshii # 1 255 2 242 243 170 40.0 2e-42 MKVEIIAHTPNPEEVIAQAAKLCYSAVGVGEIKEKMTEESRDKFLSMLMSFSHASPLEHA SFTFAVEGVSRTLTHQLVRHRIASYSQQSQRYVRLDNFEYIIPPEIEKDSEALAIYKEIM ENDKKAYQKLTEILIANKAKKLIDRGMDEKKARRLVEKDSIEDARYVFPNACETKIVFTM NVRTLIHFFDLRCCTRAQWEIRQLATEMLKQCKKISPILFKDSGPACVKGPCKEGTMSCG RAKEIREYYKKLGEE >gi|289656168|gb|ADCS01000022.1| GENE 34 36048 - 36335 181 96 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 [Bacillus selenitireducens MLS10] # 2 83 6 88 255 74 34 1e-12 MKEYVYGRNPVIEILKNKKADKLYVQMGNFEGSMKKIYAMAKEQNILITELNKKKLDELS EGANHQGVVALVSGYEYSTLEDLILNGINQILILDK Prediction of potential genes in microbial genomes Time: Fri May 27 07:31:27 2011 Seq name: gi|289656167|gb|ADCS01000023.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.23, whole genome shotgun sequence Length of sequence - 6606 bp Number of predicted genes - 8, with homology - 8 Number of transcription units - 5, operones - 3 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 6/0.000 + CDS 3 - 683 472 ## PROTEIN SUPPORTED gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 2 1 Op 2 . + CDS 670 - 1203 669 ## COG3688 Predicted RNA-binding protein containing a PIN domain + Term 1323 - 1383 5.4 - Term 1320 - 1355 1.7 3 2 Op 1 . - CDS 1360 - 2091 470 ## COG1180 Pyruvate-formate lyase-activating enzyme 4 2 Op 2 . - CDS 2084 - 3613 1588 ## CLK_3052 hypothetical protein - Prom 3668 - 3727 11.0 + Prom 3607 - 3666 8.2 5 3 Tu 1 . + CDS 3722 - 4387 671 ## gi|299143775|ref|ZP_07036855.1| putative cyclic nucleotide-binding domain protein + Term 4496 - 4560 7.2 - Term 4499 - 4536 4.0 6 4 Op 1 . - CDS 4552 - 5478 1097 ## COG1316 Transcriptional regulator 7 4 Op 2 . - CDS 5555 - 6124 453 ## FMG_1488 hypothetical protein + Prom 6077 - 6136 13.5 8 5 Tu 1 . + CDS 6218 - 6605 399 ## COG0006 Xaa-Pro aminopeptidase Predicted protein(s) >gi|289656167|gb|ADCS01000023.1| GENE 1 3 - 683 472 226 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 [Bacillus selenitireducens MLS10] # 1 222 17 245 255 186 40 4e-47 EILKNKKADKLYVQMGNFEGSMKKIYAMAKEQNILITELNKKKLDELSEGANHQGVVALV SGYEYSTLEDLILNGINQILILDKIEDPHNLGAIARSAEAFGFKGIIIPKHKSVYVNDVV YKTSAGAIDNVSVVIETNLSNSIEKLKENGYWIFGADMEGEEYFKSDLKGKIVLVVGNEG KGLSPAVRKHCDKIISIPMAGKINSLNASCAASILMAEVLKQNEAD >gi|289656167|gb|ADCS01000023.1| GENE 2 670 - 1203 669 177 aa, chain + ## HITS:1 COG:CAC3153 KEGG:ns NR:ns ## COG: CAC3153 COG3688 # Protein_GI_number: 15896401 # Func_class: R General function prediction only # Function: Predicted RNA-binding protein containing a PIN domain # Organism: Clostridium acetobutylicum # 13 175 4 172 172 101 39.0 8e-22 MKPIRYLKNYEYLFVDGYNIINSWEVFKNYREDLEEQRKRLIDILSEYSHVIQEKIILVF DGYMVKKSPGAIYEHDNILVVFTRELETADHFIERQLDEMGRVRKIRVATSDNIEQQIIL SRGGIRISAREFEVEVENGMKKINKNIVTLKKNYKNELLLDAEVIRKLNKIRGSIKE >gi|289656167|gb|ADCS01000023.1| GENE 3 1360 - 2091 470 243 aa, chain - ## HITS:1 COG:yjjW KEGG:ns NR:ns ## COG: yjjW COG1180 # Protein_GI_number: 16132196 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Pyruvate-formate lyase-activating enzyme # Organism: Escherichia coli K12 # 4 242 6 282 287 127 30.0 3e-29 MCRAPVNQFLPMSLVDGPGNRCAIFFQGCNLNCSFCHNPETIKIIHSEEENDDIKFYSVD ELFEKVKKIRPFIVGITTSGGECTIHHKFLIQFFKKIKTLNLNILVDTNGLIDLSNENMK ELVELTDGFMLDIKALEESSHKRITGSSNKTVLKNMHYLAKLGKLEEIRTVLMSGEDNLK IVDTITKELSPYLKIKNIRYKLISYRPFGVRSEFSDLHSVSDNEKEYLKTVAQKNGFTDI VLI >gi|289656167|gb|ADCS01000023.1| GENE 4 2084 - 3613 1588 509 aa, chain - ## HITS:1 COG:no KEGG:CLK_3052 NR:ns ## KEGG: CLK_3052 # Name: not_defined # Def: hypothetical protein # Organism: C.botulinum_A3_LochMaree # Pathway: not_defined # 12 508 2 496 498 513 51.0 1e-144 MERFFTVEQIKNEVLNTMQNPALTYEQQTSRLAKISENIMDYPVNENDDFYNLYELGEIC DLDEGHAPYAPRYILPDYEKLLKEGCEFLRLTPAKNLREAINNLLIFYHHVPSVTRFPVY IGSLDKLLEPFIEDEKDADEIIRLFLIQLDRTIDDSFCHANIGPEETKAGNIILNNLASL QNVTPNLTLLYDKDLTPDSFAEKAIEVSIDSANPAFANLNYYQKDFGKNKFGIASCYNAL PVCGGAFTLSRLRLNKIALAAKSYDDFFENTMPHAIDTMLHFMESKIDFLVNKTQFFETN FLVKEGFVKKENFVGLFGVVGLYECVNELAKKLNEDIEFGHSDKADEIGLRVMDELEKRV KSFKSKYSNIWNHEFMLHSQVGAANDEGTTAGVRIKIGREPMMYEHITQAAKFHKYFPSG VGDHFPFENTAKKNPKAVLDIFKAAFEMGMRYISSYGSDSDLIRVTGYLVKKSDIEKINR CEQVSYDTVQYAQDAFNKYELLNRKVRNV >gi|289656167|gb|ADCS01000023.1| GENE 5 3722 - 4387 671 221 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299143775|ref|ZP_07036855.1| ## NR: gi|299143775|ref|ZP_07036855.1| putative cyclic nucleotide-binding domain protein [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 221 1 221 221 385 100.0 1e-106 MLGAFLKSIFNGEQIDEKFLIRNKMSIYDFFQGEIIIAEDERVEYIDFLVQGSVFISKFS KSGERIIANSLKAPQIFMLLEFLGGMDNTIGTITSLTNIKIIRIPLPLFKKELKYDIELL NLTLNYVSNFAVELMSQQIIKKSHSIEYNILNYFYNIVLENKLPCKIEFNKSFLADLFNI NVRTVYRYLNEWEEKNFIKRQGQNIIINKPGFTKIEKFLDL >gi|289656167|gb|ADCS01000023.1| GENE 6 4552 - 5478 1097 308 aa, chain - ## HITS:1 COG:lin2662 KEGG:ns NR:ns ## COG: lin2662 COG1316 # Protein_GI_number: 16801723 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 43 304 69 323 349 117 29.0 4e-26 MSKTGGYMKKFLKFLLGFIFTIIIVSAAAIYFLYPKMDEAAINNIFKGQDKINILLIGKE SPVTLDTPDPNAPAHSDTLMLATINKATNKMQVVSIPRDTYFEYLPGSKKRHQKINAAFF INGAEGTIAAIEKFLDTKIDKYIVVDYNTVIQTIDAVGGMDIDWEYDDYYYTDEWVNPPL VIDLKHGPNHLDGQAALNYLRTRKIYKNQDIDRIKAQQNFMAELFQKVKNPKNVVLIPKF LKIIAENTQTNMTRNEILALGFYGVKNIKKDEINFKTLPGDEYKPGKISFYKIDQDVARK VFSEDYEK >gi|289656167|gb|ADCS01000023.1| GENE 7 5555 - 6124 453 189 aa, chain - ## HITS:1 COG:no KEGG:FMG_1488 NR:ns ## KEGG: FMG_1488 # Name: not_defined # Def: hypothetical protein # Organism: F.magna # Pathway: not_defined # 6 189 2 175 176 109 41.0 4e-23 MNKTKNKKEIKLYNLILPIWILIAFPVVWIYTIPANFIVDSIVFLFTLKFLNIENKKEIY KKSIMKIVIFGFLSDIIAGIALLFSLMGLTAISRNSKILQGLFKNKPLIDYFEFAFYNPT KNLPSFLLVFAAIVIAGILIYIFNSKYSFTKTDLTKILKKKIALSLAIFTAPYFFLLSLE FCNKFFNIY >gi|289656167|gb|ADCS01000023.1| GENE 8 6218 - 6605 399 129 aa, chain + ## HITS:1 COG:CAC2788 KEGG:ns NR:ns ## COG: CAC2788 COG0006 # Protein_GI_number: 15896043 # Func_class: E Amino acid transport and metabolism # Function: Xaa-Pro aminopeptidase # Organism: Clostridium acetobutylicum # 2 129 3 132 358 88 39.0 2e-18 MNSRINNVKLYMNREEINKLLITDPYSIFYLIGKWFSPGERLLMLLIDANGNMKLFLNRL FPASDDSEPEIIWYSDSENPFDMIACNLSGVVGVDKNMPARFLLPLMQNCNEIDFVEGSY IVDDLRGVK Prediction of potential genes in microbial genomes Time: Fri May 27 07:31:51 2011 Seq name: gi|289656166|gb|ADCS01000024.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.24, whole genome shotgun sequence Length of sequence - 16153 bp Number of predicted genes - 11, with homology - 11 Number of transcription units - 5, operones - 4 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 2 - 940 1064 ## COG0006 Xaa-Pro aminopeptidase 2 1 Op 2 . + CDS 950 - 1792 1009 ## COG0190 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase + Term 1863 - 1920 8.2 - Term 1857 - 1900 2.5 3 2 Op 1 . - CDS 1903 - 3132 1409 ## COG2270 Permeases of the major facilitator superfamily 4 2 Op 2 . - CDS 3129 - 3929 779 ## TDE1263 hypothetical protein - Prom 3979 - 4038 9.6 + Prom 3747 - 3806 9.2 5 3 Tu 1 . + CDS 4054 - 4881 731 ## COG3868 Uncharacterized conserved protein + Prom 4893 - 4952 10.9 6 4 Op 1 58/0.000 + CDS 5039 - 8794 757 ## PROTEIN SUPPORTED gi|163796927|ref|ZP_02190884.1| 30S ribosomal protein S12 7 4 Op 2 5/0.000 + CDS 8828 - 12397 4341 ## COG0086 DNA-directed RNA polymerase, beta' subunit/160 kD subunit + Term 12398 - 12449 16.2 8 5 Op 1 56/0.000 + CDS 12784 - 13197 559 ## PROTEIN SUPPORTED gi|220927773|ref|YP_002504682.1| ribosomal protein S12 9 5 Op 2 51/0.000 + CDS 13287 - 13757 637 ## PROTEIN SUPPORTED gi|169824188|ref|YP_001691799.1| 30S ribosomal protein S7 10 5 Op 3 30/0.000 + CDS 13773 - 15851 3066 ## COG0480 Translation elongation factors (GTPases) 11 5 Op 4 . + CDS 15873 - 16151 382 ## PROTEIN SUPPORTED gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 Predicted protein(s) >gi|289656166|gb|ADCS01000024.1| GENE 1 2 - 940 1064 312 aa, chain + ## HITS:1 COG:CAC2788 KEGG:ns NR:ns ## COG: CAC2788 COG0006 # Protein_GI_number: 15896043 # Func_class: E Amino acid transport and metabolism # Function: Xaa-Pro aminopeptidase # Organism: Clostridium acetobutylicum # 2 312 46 358 358 280 47.0 3e-75 MLLIDANGNMKLFLNRLFPASDDSEPEIIWYSDSENPFDMIACNLSGVVGVDKNMPARFL LPLMQNCNEIDFVEGSYIVDDLRGVKDKDEIEKMIKASEVNDAAMDMMKRKLSENLSEEE MAKYLLTAYESLGSNSFSFEPIIAYGVNASDPHHENDNSLKKEGDCIVVDMGCLLDGYCS DMTRTFFYKNVSEKAKEVYETVLAANLAGIAKVKPGVRFCDIDKATRDVIENAGYGEYFT HRTGHFIGLETHDKGDISSANTKVAEVGNIFSIEPGIYIPGVVGVRIEDLVLVTEDGCKV LNNYPKKLTIVE >gi|289656166|gb|ADCS01000024.1| GENE 2 950 - 1792 1009 280 aa, chain + ## HITS:1 COG:BS_folD KEGG:ns NR:ns ## COG: BS_folD COG0190 # Protein_GI_number: 16079487 # Func_class: H Coenzyme transport and metabolism # Function: 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase # Organism: Bacillus subtilis # 2 279 5 283 283 201 38.0 1e-51 MIIRGAEIAKKLTVDINDSIDELMGIIPCITIIRVGEKAADLAYQRGAVKKLSEFGIKCV IEAFPMEITQDEFIENFKRINDDESVHGILLMRPLPDHLDDSLVERIINPLKDVDGISPM NLAGIYLGNEKFFAPCTPQAVMEILESINYELRGKKVVIVGCGKVVGKPLSLLMMAKDAT VVSCNEFTRDLVSECKDADVLISAAGVRNLIGKEHISSKTVVIDVGINLDENNKLCGDVN FNEVSEIVFAITPVPGGVGSITTHVLAKHLIKAVKNLMNN >gi|289656166|gb|ADCS01000024.1| GENE 3 1903 - 3132 1409 409 aa, chain - ## HITS:1 COG:CAC1585 KEGG:ns NR:ns ## COG: CAC1585 COG2270 # Protein_GI_number: 15894863 # Func_class: R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Clostridium acetobutylicum # 1 403 1 409 425 296 44.0 4e-80 MKKLTPLEKKWIFYDVGNSAFILLSTTMIPIVFNNLAEKFLDAATYLAYWGYGITISTIV VAILGPVLGAIADNKGRKNLLFSIFVMFGVISLSLMPFSKNYMLFLVLYVITKIGYNGSL IFYDSMLPDVTTDENMDKVSSYGFAWGYIGSCVPFIISIAIIFGKDKLHLSMSNAIIISF LLNAVWWLAFSLPLIKSYKQVHFLDTGVVGIKEVYSRLLFTLKEIFVDKKVFLFLLSFLF YIDGVYTIINMATAYGKSLGLSSNGLILALLVTQLVAFPCAIWFAHISKKYSTDKLLKIC IIAYGLIALYAIQLDQLYEFWILAVAVGMFQGAIQALSRSYYVRIIPAERSGEYFGIYDI CGKGASVFGTLLISIVSQITGQQNKAISLLLILFVIGYFIFDKASKVKQ >gi|289656166|gb|ADCS01000024.1| GENE 4 3129 - 3929 779 266 aa, chain - ## HITS:1 COG:no KEGG:TDE1263 NR:ns ## KEGG: TDE1263 # Name: not_defined # Def: hypothetical protein # Organism: T.denticola # Pathway: not_defined # 33 262 15 249 250 92 29.0 1e-17 MANLYTHNKFGLMLRDNLREDLKEIAYKYEAEYLIGQQGPDPFYFNTSFIIHKIKLANEI HSKSFIDFLNRNKNLIMNEKIDSPVSAYFLGSICHFILDSKIHPDVNALITSDYSHCDIE YELDRYFLIADDSDPKRFKEYNLIPNTNAICKNIYPLYESYNVSFNDVKNSLSGFRSWKK FFHCESKIKENFLLSLMDLLGVKKDYSGQILRAVPFKESKHSNEVLSDIFYSSLKSAPKL IDNIFNVIFEDDLPAKDFYINYEGEV >gi|289656166|gb|ADCS01000024.1| GENE 5 4054 - 4881 731 275 aa, chain + ## HITS:1 COG:CAC0736 KEGG:ns NR:ns ## COG: CAC0736 COG3868 # Protein_GI_number: 15894023 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Clostridium acetobutylicum # 1 274 1 275 276 172 37.0 6e-43 MRNKTEVKILSIIMIFSILFFSACNIDENSKKPYGVFIGAGPDSIEKMKNYELIVVDASN FSDTDIAKIHSNGQRVYSYLNIGSIESFRPYYDEFKSITMGNYENWSEERWIDVSDSRWK KFIIEDIAGSYIDKKIDGFFVDNIDVWYEYPSSEIYEGILNILYELNKLGLPIIINGGDS FMREAVKSDEIYKIVDGVNQECVLTSIDFENDRLCERNNIEEINYFKEYLSICKNFGMKV YVLEYSTDKNIKNKIKQWCENENYLYYISESIELL >gi|289656166|gb|ADCS01000024.1| GENE 6 5039 - 8794 757 1251 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163796927|ref|ZP_02190884.1| 30S ribosomal protein S12 [alpha proteobacterium BAL199] # 738 1170 893 1391 1392 296 40 8e-80 MVHPVKYGKRERMSFSRIDEVLSLPNLIEVQTDSFEWLLKEGLKEVFDDVSPIEDYSGNL ILEFVDYYISDEIKYDIDESKQRDTNYCAPLKVKVRLINTETGEVKEQEVFMGDIPLMTP NGTFIINGAERVVVSQLVRSPGAYYKVETDKTGKKLYSSTLIPNRGAWIEFETDAQGVVN VRIDRTRKIPVTILLRAIGIESNLEIKQMLGESESLLKTFEKDTTSNKNEALLEIYKKLR PGEPPTIDSAKSLFENMFFDNRRYDLAHVGRYKFNKKLGISARILNHYASEDIVNPETGE ILVSEGELINEEMASAIERCGINRLTVTIKSQHDGEADRDVIVIGNNFAYADDFELPFDL RELGYREKIYYPLFKQIVEENSEDVETLKNELKKNINLLSPKHIIVDDIIAAVSYEFGLF EGVGVVDDIDHLGNRRIRSVGELLQNQFRIGISRMERVIRERMTIQDSDATTPQSLINIR PVTAAIKEFFGSSQLSQFMDQNNPLSELTHKRRLSALGPGGLSRDRAGFEVRDVHNSHYG RMCPIETPEGPNIGLITSLTTYARINEYGFIEAPYRKVKLGEGIVTNEIEYITADVEYEQ IIAQSNEPLDENGKFINDRVVARGHEGIVDIYDAKSVTCMDVSPQQIVAVGTAMIPFLEN DDANRALMGANMQRQAVPLLTTEAPIIGTGIEYRAAKDSGVVIVATDDGEIVKVDATEIH LKRSGDGVVDKYKLHKFVGGNQGTTINQRPIVEKGQMVKKGEIIADGPSTDQGEMALGKN ILIAFMNWEGYNYEDAILVNQELVIKDTLTSLHIEEYESEARDTKLGPEEITRDIPNVGD DMLRDLDERGIIRIGAEVNPGNILVGKVTPKGETELSAEERLLRAIFGEKAREVRDTSLR LPHGESGIVVDVKTFTRKGGDELQPGVNEMVRVFVATKRKIQVGDKMCGRHGNKGVISRV LPKEDMPYMPDGTPIQIVLNPLGVPSRMNLGQVLEVHLGLAAKKLGWHVATPVFDGANEK DITDALDLAGYPIDGKIQLRDGRTGEEFDHPVTVGYMYMLKLHHLVDEKIHARSTGPYSL VTQQPLGGKAQFGGQRFGEMEVWALEAYGASYTLQEMLTVKSDDIVGRVKTYESIVKGEN IPQPGIPESFKVLIKELESLALEIKVLDDEGNEVDLQVDDDDLDKIDTIGNDSDEVKELI ENNQAPTQGAVRKMSHDEDVNYDDDIEDEEDEFEGTFEEDLSSFENEPDYE >gi|289656166|gb|ADCS01000024.1| GENE 7 8828 - 12397 4341 1189 aa, chain + ## HITS:1 COG:CAC3142 KEGG:ns NR:ns ## COG: CAC3142 COG0086 # Protein_GI_number: 15896391 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, beta' subunit/160 kD subunit # Organism: Clostridium acetobutylicum # 7 1161 6 1160 1182 1596 67.0 0 MSEHELFHSIKIGLASPEKIREWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTKDWEC NCGKYKRVRYKGVVCEKCGVEVTKAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM SPRALEKVLYFASYVVTYVEPGETALYLKQLLSETEYREYRAQYGDKFKAKMGAEAIKEL LQKIDLDAESKALTEELERSTGQKKVRISRRLEVIEAFIKSNNKPEWMILEAIPVIPPDI RPMVQLDGGRFATSDLNDLYRRIINRNNRLRKLLDINAPDIIVRNEKRMLQEAVDALIDN GRRGRPVTGPGNRPLKSLSEMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKFYQCGLP KNMALELFKPFVMRELVAGGFAHNIKSAKRMVERMRPEVWDVLEEVIKDHPVLLNRAPTL HRLGIQAFEPVLVEGKAIKLHPLSCTAYNADFDGDQMAVHLPLSMEAQAEARLLMLSTNN ILALKDGKPITTPTQDMILGCYYLTLDRKDHLKGDGMIFKDFDEMMHAYLSGYLHLQSHV GVRKYADENDRSGKIVNSTVGRFIINSFIPQNLGFVDRNVDKYSLEIDRVIDKKLLGVII EKTYKKHGNIETAKLLDNIKATGYHYSTIGAISISMGDVEVPDIKPEILAKADKEVQKYE KAYRRGLISDEERYEKVIEIWNNATDELTDEVMNGFDSLNNIYIMADSGARGSKNQIRQL AGMRGLMASPSGRTIEVPIKSNFREGLSVLEFYMSAHGSRKGLADTALRTADSGYLTRRL VDVSQQVIIKEEDCGTDEYLVAKDFTDGKELIEGLKDRIEGRYSFEDVIDPQTNEIIVHA NTEITDDDADKIVAAGIKEVKVRTVLGCKCKTGVCAHCYGRNLATGSKVGIGEAVGVIAA QSIGEPGTQLTMRTFHTGGVASAADITQGLPRVEELFEARKPKGLAVISEIEGTVEIKEQ NRKREVIVTSENGERQSYNIVYGARIKVKNGDYVQKGDELTQGSVYPQDLLRVKGAKGVE EYIVKEVQRVYRLQGVDINDKHIEIIVKQMLSKYKIEDPGDTMFLPGSLVEANEFKNTNK EMIDKGLQPATGEVNLLGITKASLATDSFLSAASFQETTRVLTDAAIKGKQDMLNGLKEN IIIGQLIPAGTGARQNRTVQIGISEKLKENFKLLENSELLDESEFEEVE >gi|289656166|gb|ADCS01000024.1| GENE 8 12784 - 13197 559 137 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|220927773|ref|YP_002504682.1| ribosomal protein S12 [Clostridium cellulolyticum H10] # 1 136 1 136 142 219 80 7e-57 MPTINQLVRNGRKKVETKSKSPALDVNYDSLRKVETEVNSPQKRGVCVAVRTVTPKKPNS ALRKVARVRLTNGYEVMAYIPGIGHNLQEHSVVLIRGGRVKDLPGVRYHIIRGTLDTAGV DTRRQARSKYGTKRPKK >gi|289656166|gb|ADCS01000024.1| GENE 9 13287 - 13757 637 156 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169824188|ref|YP_001691799.1| 30S ribosomal protein S7 [Finegoldia magna ATCC 29328] # 1 156 1 156 156 249 75 7e-66 MPRKGHIQKREVMADPVYEDVVITKLINNVMLDGKKGTAQRIVYKALESIQESTGEEALE VFYKALNNVMPVLEVKGRRIGGATYQVPIEVRPERRQTLGLRWLVKFARARGEHTMDQRL AKEILDASNGLGASVKRKEEMHRTAEANKAFAHYRW >gi|289656166|gb|ADCS01000024.1| GENE 10 13773 - 15851 3066 692 aa, chain + ## HITS:1 COG:BS_fus KEGG:ns NR:ns ## COG: BS_fus COG0480 # Protein_GI_number: 16077180 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factors (GTPases) # Organism: Bacillus subtilis # 1 691 1 690 692 973 71.0 0 MAREIPLDKVRNLGIMAHIDAGKTTTTERILYYTGKIHKIGETHEGAAQMDWMAQEQERG ITITSAATTAFWKGHRLNIIDTPGHVDFTVEVERSLRVLDGAVALFDAKSGVEPQSETVW RQADKYRVPRIAHINKMDITGADFFRSVETIDRRLKGNPVPIQIPMGAEDHFIGMIDLVE MLAEIYKNEDGTEIEITEVPEEYRELAEQYRDNLIEKVSEFDEELMMAYLEGEEITKEQL KKAIRKGTLAVGMTPVTCGSSYKNKGVQLLLDAIVDYLPAPTDIPAIKGISVDTGEEIER HASDEEPLSALAFKIVTDPYVGKLAYFRVYSGKLTAGSYVLNSTKGKRERIGRILLMHAN KREEVEEVYAGEIAAAVGLKDTTTGDTLCDEKSQVILEKMEFPEPVISVAIEPKTKASQD KMAIALQKLSEEDPTFRTYTDEETGQTIISGMGELHLDIIVDRMLREFKVEANIGNPQVS YRESITKPAEGEGKYVRQSGGRGQYGHAKIKVEPLEPGSGFVFENAIVGGSIPKEYVGPV QQGIEEALKSGILGGYEVLDIKVTLYDGSYHEVDSSEMAFKIAGSMALRDALAKGSPVLL EPTMKVEITTPEEYMGDVIGDVNSRRGRMEGMELVSGAQIVTSYVPLAEMFGYATALRSN TQGRANYSMQFDHYEQVPKSIADEVLGDKNKN >gi|289656166|gb|ADCS01000024.1| GENE 11 15873 - 16151 382 93 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 [marine gamma proteobacterium HTCC2080] # 1 93 1 92 407 151 78 2e-36 MAKAKFERTKPHVNIGTIGHVDHGKTTLTAAITLVLSKKFGGGEFVDYAHIDKAPEERER GITISTSHVEYETANRHYAHVDCPGHADYVKNM Prediction of potential genes in microbial genomes Time: Fri May 27 07:32:00 2011 Seq name: gi|289656165|gb|ADCS01000025.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.25, whole genome shotgun sequence Length of sequence - 15995 bp Number of predicted genes - 21, with homology - 18 Number of transcription units - 8, operones - 5 average op.length - 3.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 232 319 ## PROTEIN SUPPORTED gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 + Term 233 - 297 5.1 - Term 227 - 274 9.2 2 2 Op 1 . - CDS 289 - 672 344 ## CPF_0994 hypothetical protein 3 2 Op 2 . - CDS 708 - 1175 585 ## COG2606 Uncharacterized conserved protein - Prom 1204 - 1263 9.8 + Prom 1248 - 1307 12.2 4 3 Op 1 2/0.000 + CDS 1333 - 1608 276 ## COG0640 Predicted transcriptional regulators 5 3 Op 2 . + CDS 1611 - 2249 544 ## COG5658 Predicted integral membrane protein 6 3 Op 3 . + CDS 2242 - 2841 402 ## BCZK2723 hypothetical protein 7 3 Op 4 . + CDS 2838 - 3245 406 ## gi|299143795|ref|ZP_07036875.1| putative lipoprotein 8 3 Op 5 . + CDS 3253 - 3345 57 ## + Term 3390 - 3424 -0.9 + Prom 3349 - 3408 1.8 9 4 Op 1 19/0.000 + CDS 3433 - 4347 874 ## COG0540 Aspartate carbamoyltransferase, catalytic chain 10 4 Op 2 1/0.000 + CDS 4349 - 4777 624 ## COG1781 Aspartate carbamoyltransferase, regulatory subunit 11 4 Op 3 13/0.000 + CDS 4781 - 5482 548 ## COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases 12 4 Op 4 . + CDS 5475 - 6374 1173 ## COG0167 Dihydroorotate dehydrogenase + Prom 6393 - 6452 10.2 13 5 Op 1 2/0.000 + CDS 6512 - 7468 1074 ## COG1481 Uncharacterized protein conserved in bacteria 14 5 Op 2 . + CDS 7449 - 7718 388 ## COG1925 Phosphotransferase system, HPr-related proteins + Term 7725 - 7766 7.6 15 6 Op 1 3/0.000 + CDS 7782 - 11231 3527 ## COG0587 DNA polymerase III, alpha subunit 16 6 Op 2 12/0.000 + CDS 11242 - 12201 1519 ## COG0205 6-phosphofructokinase 17 6 Op 3 . + CDS 12217 - 13965 2200 ## COG0469 Pyruvate kinase - TRNA 13999 - 14075 76.0 # Pro GGG 0 0 18 6 Op 4 . + CDS 14017 - 14142 57 ## 19 6 Op 5 . + CDS 14135 - 14770 677 ## COG1636 Uncharacterized protein conserved in bacteria - Term 14750 - 14778 -0.1 20 7 Tu 1 . - CDS 14780 - 15778 767 ## COG0136 Aspartate-semialdehyde dehydrogenase - Prom 15803 - 15862 7.1 + Prom 15840 - 15899 5.4 21 8 Tu 1 . + CDS 15933 - 15993 73 ## Predicted protein(s) >gi|289656165|gb|ADCS01000025.1| GENE 1 2 - 232 319 76 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 [marine gamma proteobacterium HTCC2080] # 1 76 332 407 407 127 78 5e-29 RHTPFFNGYRPQFYFRTTDVTGDIQLAEGVEMVMPGDNSTFTVTLITPIAMDEGLRFAIR EGGRTVASGVVSKIIE >gi|289656165|gb|ADCS01000025.1| GENE 2 289 - 672 344 127 aa, chain - ## HITS:1 COG:no KEGG:CPF_0994 NR:ns ## KEGG: CPF_0994 # Name: not_defined # Def: hypothetical protein # Organism: C.perfringens_ATCC13124 # Pathway: not_defined # 1 125 1 125 127 124 53.0 1e-27 MKFWIFMLIMNLLIPFSLIIIGYKYKKNPPMKINKFHGYRTSMSMKNNETWIFAQKYHGK LCSSLGIIMLPISIISMLFIIKKDINTVGKIGGIICLLQLIVLILSIIPTEKALKKSFDS NGNKKIQ >gi|289656165|gb|ADCS01000025.1| GENE 3 708 - 1175 585 155 aa, chain - ## HITS:1 COG:FN0673 KEGG:ns NR:ns ## COG: FN0673 COG2606 # Protein_GI_number: 19704008 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Fusobacterium nucleatum # 1 154 1 154 154 175 60.0 3e-44 MAIEKVKEYFKKFNMENRILEFETSSATVELAAKAANCEPCRIAKTLSFKIGENPILIVV AGDMKIDNAKYKSTFKAKAKMLTHDEVLNLIGHEVGGVCPFAINDGVTVYLDESLKRFDT VFPACGSSNSAIELTVEELEKYSMFSSWIDVCKLI >gi|289656165|gb|ADCS01000025.1| GENE 4 1333 - 1608 276 91 aa, chain + ## HITS:1 COG:BS_yvbA KEGG:ns NR:ns ## COG: BS_yvbA COG0640 # Protein_GI_number: 16080432 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus subtilis # 3 87 1 85 90 80 43.0 1e-15 MSLEKTFKALSDNNRREILEMLKNGMMSAGDIAENFDMTQATVSYHLSILKDAGLILEYR DGNFRNYVLNTSVFEELMSYVFSMVNEKGET >gi|289656165|gb|ADCS01000025.1| GENE 5 1611 - 2249 544 212 aa, chain + ## HITS:1 COG:MA3135 KEGG:ns NR:ns ## COG: MA3135 COG5658 # Protein_GI_number: 20091953 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Methanosarcina acetivorans str.C2A # 13 212 18 219 227 78 27.0 1e-14 MSRSKLFKIGLLITFIPIIMGAIYYNRLPESMPIHFGSDNLADDYASKNFALFGIPLFMM ILYVGTYFITDKDPRRKYQGEGAMRIVLLIIPVLSVAISYLSISYSLGNRIDISTWARGF IYVIFILMGNYFPKTKRNYTVGIKLPWTLHSDYVWNKTHRFGGYVWIGGGIFGIASMFLN KFEDIIMIAIILAITFLPMIYSYIVYKEILNE >gi|289656165|gb|ADCS01000025.1| GENE 6 2242 - 2841 402 199 aa, chain + ## HITS:1 COG:no KEGG:BCZK2723 NR:ns ## KEGG: BCZK2723 # Name: not_defined # Def: hypothetical protein # Organism: B.cereus_ZK # Pathway: not_defined # 12 167 31 192 227 71 35.0 2e-11 MNKKFFNYITIFICGMLNFFISQKLIRMPILTYLYSTFFFSVLLVEMPTLLNFVIAFSAG IFEETFRFLFKKFLIRNSKDIIEPIVFGLGHGIAEAVIIINSVLLYVNISQFSMLGIYER FLAIIFHICESVIIWNGFLYNKKYRYLLVAIVIHGLFDFLIYIGNVFNFELGTLYFIWSA IDIVLVGYVLKNRKYWRSL >gi|289656165|gb|ADCS01000025.1| GENE 7 2838 - 3245 406 135 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299143795|ref|ZP_07036875.1| ## NR: gi|299143795|ref|ZP_07036875.1| putative lipoprotein [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 135 1 135 135 226 100.0 3e-58 MKKYKILVMLFLFGLLVSACGNSNKASAEDVEKYSKNAQKVISIVNSKDVFRLKDICSDD LKNALTDEIIEQINVDVGSKGDFDSFMDVNVSYQKDKNTGQDYILVIQKVKYNNGELIYT LTFNNDEKLLGIFYK >gi|289656165|gb|ADCS01000025.1| GENE 8 3253 - 3345 57 30 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKNIISCLNKNIDIRLILVYIISRRKLLLN >gi|289656165|gb|ADCS01000025.1| GENE 9 3433 - 4347 874 304 aa, chain + ## HITS:1 COG:CAC2654 KEGG:ns NR:ns ## COG: CAC2654 COG0540 # Protein_GI_number: 15895912 # Func_class: F Nucleotide transport and metabolism # Function: Aspartate carbamoyltransferase, catalytic chain # Organism: Clostridium acetobutylicum # 3 302 5 306 307 378 59.0 1e-105 MLRHLIEPSDFTTEEFERLFGLADNILQDPVKYGDVCKGKLLASLFFEPSTRTRLSFESA MLRLGGQIIGFADAKVSSTAKGESLSDTLRTIENYADIACMRHPKEGAALLASKHMTRMP IINAGDGGHQHPTQTLTDLMTIRYYKKRFDNMTIGLCGDLKFGRTIHSLVRAMNRYENIK FVFISPEELQMPKQFKDELDPKCYTETTSLTDAIKDLDILYMSRVQRERFVSEEEYLRLK DFFILDNEKMKLAREDMIVLHPLPRVNEIATEVDSDKRAVYFEQARFGMYVRMALIMFLL GMEG >gi|289656165|gb|ADCS01000025.1| GENE 10 4349 - 4777 624 142 aa, chain + ## HITS:1 COG:CAC2653 KEGG:ns NR:ns ## COG: CAC2653 COG1781 # Protein_GI_number: 15895911 # Func_class: F Nucleotide transport and metabolism # Function: Aspartate carbamoyltransferase, regulatory subunit # Organism: Clostridium acetobutylicum # 1 137 1 137 146 126 47.0 1e-29 MINVSKIKKGIVLDHIECGKGHILYKALKLDEVTDPVVLMQNISSTSLGKKDLIKIETDF NLDFTVLGLIAPHTTVNFIEDGERVKKLRMELPERVEGIMHCKNPRCITNIENVQDHAFA LVDAEKREYKCEYCDSLTIYAE >gi|289656165|gb|ADCS01000025.1| GENE 11 4781 - 5482 548 233 aa, chain + ## HITS:1 COG:CAC2651 KEGG:ns NR:ns ## COG: CAC2651 COG0543 # Protein_GI_number: 15895909 # Func_class: H Coenzyme transport and metabolism; C Energy production and conversion # Function: 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases # Organism: Clostridium acetobutylicum # 4 232 10 243 246 190 45.0 2e-48 MASVIYNREVDKNYFLMKVDEISNVEPGQFYMLRAWDNYPTLSRPISVFDVQEDGILFLY EVRGIGTKLLSKLRKNDEIKLFGPYGNHFCYKNKREISLVSGGVGAAPFYYLSKCLKRYN ESVKIDLYIGERENQNLEMLFKDLDVNLKAKKGGFITDILEYDKKLIYTCGPEIMMRKVF EYGNENNCEVYMSLENRMGCGVGACLSCVCKTKDGNKRACKEGPVFFGGDLVE >gi|289656165|gb|ADCS01000025.1| GENE 12 5475 - 6374 1173 299 aa, chain + ## HITS:1 COG:CAC2650 KEGG:ns NR:ns ## COG: CAC2650 COG0167 # Protein_GI_number: 15895908 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotate dehydrogenase # Organism: Clostridium acetobutylicum # 5 299 3 298 298 328 56.0 7e-90 MNRLKTEILGVEFKNPIIPASGTYGFGEEYTKYYKPSILGGIASKGITYYPKSGNDGIRI WETPSGIMNSIGLENPGIHYFAENILGKMNTLETNVIVNLGGNTVEEYVEAAKILNDYEF FAIELNISCPNVKHGGMAFGIEADSAALVTEAVKKATRHRLIVKLSPNARDIVESAKAVE KAGADGISLVNTFLAMAIDAKTGKAVFNNTYAGLSGPAIKPIALRMTHQVCKNVSIPVIA MGGITNGMDAIEFIMAGASAIQVGTANFMNPNVILDIIDEMQEFLEEKNLRVDDIRAII >gi|289656165|gb|ADCS01000025.1| GENE 13 6512 - 7468 1074 318 aa, chain + ## HITS:1 COG:CAC0513 KEGG:ns NR:ns ## COG: CAC0513 COG1481 # Protein_GI_number: 15893804 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 1 311 1 315 317 262 47.0 7e-70 MSFSSSVKDEVAKMKVSQNCDIVAELSGLIPMCASLKFNEGINIYFNTENAAVARRIFTF LKRYYSDEVEVVVSKSKQLKKNNIYSIILKDDGASRVLLYDVDYLRNENVFTPNYMPISI LDMDCCKRAYIRGAFLGAGSISNPEKYYHFELVSSKYEHAKFLSEIINSLGFNSKIVGRK ESYIVYIKEAEKISDMLSYIGASKATLDFENIRVYKDINNRVNRIVNLENANLNKIVNTS VKQVMDIEYIKNTIGLESLPKNLRDVAELRLEDDSISLKELGEMLNPPVGKSGVNHRLNK IKEIASKLRSEHNGNKNG >gi|289656165|gb|ADCS01000025.1| GENE 14 7449 - 7718 388 89 aa, chain + ## HITS:1 COG:BS_crh KEGG:ns NR:ns ## COG: BS_crh COG1925 # Protein_GI_number: 16080527 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, HPr-related proteins # Organism: Bacillus subtilis # 1 84 1 84 85 73 50.0 1e-13 MVTKTVKLTNEDGLHARAAALFVRVANNFNSEITLQAHGDTVNGKSIIGVMSLGVFNGEE VVLTALGSDEQEAIDKLVELVENKFINRY >gi|289656165|gb|ADCS01000025.1| GENE 15 7782 - 11231 3527 1149 aa, chain + ## HITS:1 COG:CAC0516 KEGG:ns NR:ns ## COG: CAC0516 COG0587 # Protein_GI_number: 15893807 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit # Organism: Clostridium acetobutylicum # 2 1146 9 1167 1167 1093 50.0 0 MRDFVHLHVHSEYSLLDGSARISELANKAKELNMKAIALTDHGNMYGTIAFYKACKNAGI KPIIGCEVYIADGNYRVFDKNMSRFHLILLAENYTGFKNLMKIVSEGFVNGYYYKPRIDL DVLRKYHEGIIATSACLAGEVQRKLNYGDFTGAEEAALKYEKIFGKGNFFLELQDHDIKE QKKVNKYLETLSAKLDIPLIATNDVHYLNREDAKAHDVLLCVQTGTTVNEENRMKFQTEE FYLKSIDEMYERFSGNEDALLNTVKIADRCNVNIEFHNLHLPHFEVPAGFTNESYLRFLV DRGLKERYEIINEEISNRVEYEFHTIIDMGYVDYFLIVWDFIRYARDNGIVVGPGRGSAA GSIISYALRIIDIDPLKFNLLFERFLNPERVSMPDIDIDFCYERREEVIEYVIEKYGIEN VAQIVTFGTMGARGAIRDVGRALDMSYGRVDYIAKQVPEELNMTIKDALVVSPSLNKEYN EDEDAKRLIDMALKVEGLPRHTSTHAAGVVISKDAITNYVPLTRNDKIIATQFNMNELEE LGLLKMDFLGLRTLTVIRDALNLIKKNYGIEIDFSSMELNDSNVLNMFAKAETLGIFQFE SSGMRAFLKDLKPDAFEDLVAANALFRPGPMNQIPKFIESKHNLNKISYVHEKLEDILKS TYGCIVYQEQVMQIVQKIGGYSLGRADLVRRAMSKKKMAVMEEERQNFIYGKIENGKKIC CGAIENGVDEASANKIYDLMIDFAKYAFNKSHSVAYSVVAYRTAYLKYYYPTEFMAAQIS SYMGKVTQVTLYIEECKRLGIEVLPPDVNESFKHFTVEGNNIRFGLKAIKNMNENFISTI EIARKAGKFSSFNDFVKRVCEINSQAINKRAMEYLIKSGALDSLGGNRAQYLAIYEKTID NVIGNLKNNVKGQFSLFDTNSYEDKEVLPKLRDFSTNEKLDFEKEILGIYVSGHPLDAYI ETIKNMNVTNTSIIFENSKNAMRKTDSYVKIVGLLKNKKTMITKNKKIMAFASLEDLYGQ IELVIFPNLYEKVTDKLIEGKVLLVEGHIQESDVENPKIIVDGLRTVSEPSKNKLYLSLP SFENKDLLNVIKLCLKNYRGDTPVVLYFEKEGSVFGAEREFWIDSSKIDDLKFDLLQYLN NDISKIVLK >gi|289656165|gb|ADCS01000025.1| GENE 16 11242 - 12201 1519 319 aa, chain + ## HITS:1 COG:CAC0517 KEGG:ns NR:ns ## COG: CAC0517 COG0205 # Protein_GI_number: 15893808 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphofructokinase # Organism: Clostridium acetobutylicum # 1 318 1 318 319 310 53.0 3e-84 MKRIAILTSGGDAPGMNAVIRAVVRSAIYMGYEVYGVKNGYEGLIDGDIVQLIESSVADI IQRGGTILGTSRSKRFETDEGLDKAVNILEVFGIDKLIVAGGDGSLRGALALAGRGIDVI GIPLSIDNDLGYTDYTIGFFTAIDTVTHAISNIRDTTEAHGRANIVEVMGRNCGDIALYS GLSGGAESIIVPERKFDMEEISKKAILGKNRGKRHHIIILAEGAGDAYKIAEEFEKLTGI DTRVTILGYIQRGGNPNVVDRIMGAAMGNAAVEYIISNSGAYAVGICSGKIEIFNLEIAL NIKKEFKDDLSDILKKISI >gi|289656165|gb|ADCS01000025.1| GENE 17 12217 - 13965 2200 582 aa, chain + ## HITS:1 COG:CAC0518 KEGG:ns NR:ns ## COG: CAC0518 COG0469 # Protein_GI_number: 15893809 # Func_class: G Carbohydrate transport and metabolism # Function: Pyruvate kinase # Organism: Clostridium acetobutylicum # 1 472 1 472 473 474 53.0 1e-133 MKRTKIVSTIGPASDSEEVLRQLFLEGLDVCRLNFSHGSHEEHKVRIDRIKKIREELNLP VAIMLDTKGPEIRLGLFKNMIDVELDTEEKFTLTTRNIEGDQNIASVSYKDLPKDLQIGS RVLIDDGLVGLRVEKIDGTEIECVVENGGKISSRKGVNVPGIHLKLPALTEKDKEDILFG IENDIDFIAASFVRTKSDVLEIRKILEDADNFDIRIISKIESEQGLENLDEILEVSDGIM VARGDLGVEIETEEVPLAQKEIINKCNLVGKVVITATQMLDSMMRNPRPTRAEANDVANA VLDGTSAVMLSGETASGRYPVLAVRTMRKIVEVTENSIDYRALLRKKIEDISNSTTNAIG KSTCTIAEDLNAKAIITATTSGYTTRALSKFRPKSEIIAATTNEKVRRQLSLEWGTTSIT VPNLKSTDDVINISIERAVEENLLKAGDTVIVTAGVPVGLAGSTNLIKVQTVSEILTKGV GMGSKKLTARAIVVKDEEDLIKDFKDGDIVVLTTTDKDIMKYVERSSGIVAEIAGYTSHA AITGIALSIPTIVGAFGALTKIKTGDIITIDESDGTVRRGMF >gi|289656165|gb|ADCS01000025.1| GENE 18 14017 - 14142 57 41 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNLRPHAPHTCALPNCATSRRHLKLYHRLKLDTMIWKCKYE >gi|289656165|gb|ADCS01000025.1| GENE 19 14135 - 14770 677 211 aa, chain + ## HITS:1 COG:CAC1577 KEGG:ns NR:ns ## COG: CAC1577 COG1636 # Protein_GI_number: 15894855 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 1 207 1 208 208 207 54.0 9e-54 MNKINYNLEMENIIKKLDTDNPPRLLLHSCCGPCSSSVLERLGMYFKITVLYYNPNIDTK NEFYTRVVEQRSVIERLPSKNKIELIVIDYDSSEYFDKIKGYEHEREGGYRCKLCFDLRI EEAAKFAKEKGFDYFTTTLSVSPYKNSQLLNKIGEEMAKKYGINYLYSDFKKKNGYRRSI ELSKEYNLYRQDYCGCIFSKLQSIEDRKKLG >gi|289656165|gb|ADCS01000025.1| GENE 20 14780 - 15778 767 332 aa, chain - ## HITS:1 COG:aq_1866 KEGG:ns NR:ns ## COG: aq_1866 COG0136 # Protein_GI_number: 15606903 # Func_class: E Amino acid transport and metabolism # Function: Aspartate-semialdehyde dehydrogenase # Organism: Aquifex aeolicus # 6 330 5 337 340 316 50.0 4e-86 MNKINLAIFGATGLVGQKMKHILEERNLNIDNIYFFASKNSAGKVIFFNSKEHFVEELCE KNIANKKIDYALCALDSPLAKEFLPLTKKYNITVIDNSSAFRMTDDIPLVVPEINPEKAL YEGNIIASPNCSTIQSVVALYPIYKNYGIKRIIYTTYQAVSGSGVNGIEDLKRGLWDGEN RFYPHQIAYNVLPHIDDFLDDGYTKEEMKMVNETKKIFGDNSIKITATTARVPVYDSHLV SINVETKKPFELTDIFDIFKNEPGIILYDDVKNNIYPMPIVARGRNEVFVGRIRRDFSVE NGINFISVADNTRKGAALNTIQILEYLIDKQK >gi|289656165|gb|ADCS01000025.1| GENE 21 15933 - 15993 73 20 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MIKIALLGFGTVGKGTYEIL Prediction of potential genes in microbial genomes Time: Fri May 27 07:32:55 2011 Seq name: gi|289656164|gb|ADCS01000026.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.26, whole genome shotgun sequence Length of sequence - 108998 bp Number of predicted genes - 107, with homology - 101 Number of transcription units - 42, operones - 19 average op.length - 4.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 109 - 168 5.4 1 1 Tu 1 . + CDS 202 - 1389 1263 ## COG0460 Homoserine dehydrogenase + Prom 1404 - 1463 5.6 2 2 Op 1 . + CDS 1514 - 1840 286 ## gi|299143808|ref|ZP_07036888.1| serine/threonine-protein kinase Tel1 3 2 Op 2 . + CDS 1852 - 5160 4539 ## COG2866 Predicted carboxypeptidase + Term 5175 - 5214 5.1 + Prom 5208 - 5267 12.0 4 3 Op 1 . + CDS 5309 - 5638 398 ## gi|299143809|ref|ZP_07036889.1| hypothetical protein HMPREF0629_00667 5 3 Op 2 . + CDS 5651 - 6601 1015 ## COG1052 Lactate dehydrogenase and related dehydrogenases 6 3 Op 3 . + CDS 6614 - 7057 694 ## COG0698 Ribose 5-phosphate isomerase RpiB 7 3 Op 4 . + CDS 7117 - 8619 1538 ## COG4124 Beta-mannanase + Prom 8970 - 9029 10.1 8 4 Tu 1 . + CDS 9095 - 10690 1773 ## COG0504 CTP synthase (UTP-ammonia lyase) + Term 10693 - 10742 12.1 + Prom 10699 - 10758 5.8 9 5 Op 1 3/0.000 + CDS 10779 - 11147 395 ## COG5341 Uncharacterized protein conserved in bacteria 10 5 Op 2 1/0.000 + CDS 11159 - 11656 537 ## COG4769 Predicted membrane protein 11 5 Op 3 4/0.000 + CDS 11653 - 12252 801 ## COG0424 Nucleotide-binding protein implicated in inhibition of septum formation 12 5 Op 4 . + CDS 12236 - 12958 766 ## COG2003 DNA repair proteins 13 5 Op 5 . + CDS 12960 - 14039 1060 ## COG1530 Ribonucleases G and E 14 5 Op 6 . + CDS 14042 - 14587 383 ## CLJ_B3153 lipase/acylhydrolase, GDSL family 15 5 Op 7 . + CDS 14584 - 15651 756 ## gi|299143820|ref|ZP_07036900.1| conserved hypothetical protein 16 5 Op 8 . + CDS 15648 - 15953 226 ## gi|299143821|ref|ZP_07036901.1| putative type IV pilus biogenesis protein 17 5 Op 9 . + CDS 15914 - 16075 168 ## gi|299143822|ref|ZP_07036902.1| hypothetical protein HMPREF0629_00680 18 5 Op 10 . + CDS 16072 - 16422 305 ## gi|299143823|ref|ZP_07036903.1| fimbrial protein 19 5 Op 11 . + CDS 16361 - 16912 470 ## gi|299143824|ref|ZP_07036904.1| type 4 fimbrial biogenesis pilw-related protein transmembrane 20 5 Op 12 . + CDS 16909 - 17874 786 ## gi|299143825|ref|ZP_07036905.1| conserved hypothetical protein 21 5 Op 13 . + CDS 17943 - 18500 831 ## COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) 22 5 Op 14 . + CDS 18510 - 18848 477 ## gi|299143827|ref|ZP_07036907.1| conserved hypothetical protein + Term 18857 - 18889 3.3 + Prom 18868 - 18927 8.2 23 6 Op 1 10/0.000 + CDS 18947 - 19327 589 ## COG1302 Uncharacterized protein conserved in bacteria 24 6 Op 2 1/0.000 + CDS 19330 - 19755 373 ## COG0781 Transcription termination factor 25 6 Op 3 . + CDS 19792 - 21054 1211 ## COG1570 Exonuclease VII, large subunit 26 6 Op 4 . + CDS 21047 - 21280 363 ## gi|299143831|ref|ZP_07036911.1| exodeoxyribonuclease 7 small subunit 27 6 Op 5 3/0.000 + CDS 21273 - 22130 1059 ## COG0142 Geranylgeranyl pyrophosphate synthase 28 6 Op 6 . + CDS 22132 - 22923 919 ## COG1189 Predicted rRNA methylase 29 6 Op 7 . + CDS 22934 - 24598 1661 ## COG0497 ATPase involved in DNA repair 30 6 Op 8 . + CDS 24600 - 25139 589 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 31 6 Op 9 3/0.000 + CDS 25139 - 25942 1084 ## COG0005 Purine nucleoside phosphorylase 32 6 Op 10 . + CDS 25942 - 27252 1531 ## COG0213 Thymidine phosphorylase 33 6 Op 11 . + CDS 27246 - 27881 741 ## COG1994 Zn-dependent proteases 34 6 Op 12 21/0.000 + CDS 27866 - 28588 870 ## COG1354 Uncharacterized conserved protein 35 6 Op 13 12/0.000 + CDS 28578 - 29120 673 ## COG1386 Predicted transcriptional regulator containing the HTH domain 36 6 Op 14 . + CDS 29138 - 29827 874 ## COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases 37 6 Op 15 . + CDS 29824 - 30390 554 ## COG0500 SAM-dependent methyltransferases 38 6 Op 16 . + CDS 30387 - 31601 1128 ## COG2081 Predicted flavoproteins + Term 31602 - 31628 -1.0 - Term 31589 - 31615 -1.0 39 7 Tu 1 . - CDS 31620 - 32444 731 ## COG2321 Predicted metalloprotease - Prom 32581 - 32640 8.4 + Prom 32395 - 32454 11.7 40 8 Op 1 . + CDS 32617 - 33570 996 ## COG1975 Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family 41 8 Op 2 . + CDS 33584 - 34459 803 ## Cbei_1987 regulatory protein, LysR 42 8 Op 3 . + CDS 34459 - 35157 701 ## Apre_0359 hypothetical protein 43 8 Op 4 6/0.000 + CDS 35170 - 35745 616 ## COG2068 Uncharacterized MobA-related protein 44 8 Op 5 . + CDS 35735 - 36523 936 ## COG1975 Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family 45 9 Tu 1 . - CDS 36559 - 37836 1515 ## COG1114 Branched-chain amino acid permeases - Prom 37863 - 37922 9.8 + Prom 37953 - 38012 11.0 46 10 Tu 1 . + CDS 38079 - 39443 1833 ## COG5016 Pyruvate/oxaloacetate carboxyltransferase + Term 39476 - 39520 6.2 - Term 39462 - 39509 10.7 47 11 Op 1 . - CDS 39514 - 39669 146 ## 48 11 Op 2 . - CDS 39673 - 42522 2856 ## COG0744 Membrane carboxypeptidase (penicillin-binding protein) - Prom 42615 - 42674 7.9 + Prom 42437 - 42496 11.3 49 12 Op 1 . + CDS 42638 - 43939 1255 ## COG2262 GTPases 50 12 Op 2 . + CDS 43932 - 44567 828 ## COG1739 Uncharacterized conserved protein 51 12 Op 3 . + CDS 44578 - 45285 970 ## COG0171 NAD synthase + Term 45302 - 45333 3.4 - Term 45285 - 45325 5.5 52 13 Tu 1 . - CDS 45335 - 45751 560 ## COG0783 DNA-binding ferritin-like protein (oxidative damage protectant) - Prom 45834 - 45893 9.0 53 14 Op 1 9/0.000 + CDS 46176 - 47153 1144 ## COG2984 ABC-type uncharacterized transport system, periplasmic component 54 14 Op 2 13/0.000 + CDS 47164 - 48054 1070 ## COG4120 ABC-type uncharacterized transport system, permease component 55 14 Op 3 . + CDS 48058 - 48831 210 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 + Prom 48852 - 48911 12.1 56 15 Op 1 . + CDS 48940 - 49164 368 ## gi|299143859|ref|ZP_07036939.1| conserved hypothetical protein 57 15 Op 2 . + CDS 49186 - 49407 383 ## gi|299143860|ref|ZP_07036940.1| conserved hypothetical protein 58 15 Op 3 . + CDS 49433 - 49585 276 ## gi|299143861|ref|ZP_07036941.1| conserved hypothetical protein 59 16 Op 1 21/0.000 + CDS 50125 - 51939 2231 ## COG4166 ABC-type oligopeptide transport system, periplasmic component + Term 51947 - 51985 4.5 60 16 Op 2 49/0.000 + CDS 51996 - 52922 1223 ## COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 61 16 Op 3 44/0.000 + CDS 52922 - 53881 1174 ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 62 16 Op 4 44/0.000 + CDS 53890 - 54897 953 ## COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component 63 16 Op 5 . + CDS 54890 - 55846 711 ## COG4608 ABC-type oligopeptide transport system, ATPase component + Term 55863 - 55921 5.5 + Prom 55948 - 56007 6.0 64 17 Tu 1 . + CDS 56078 - 56773 761 ## COG0588 Phosphoglycerate mutase 1 + Term 56781 - 56821 4.0 - Term 56951 - 56999 10.0 65 18 Tu 1 . - CDS 57008 - 57595 578 ## COG0526 Thiol-disulfide isomerase and thioredoxins - Prom 57673 - 57732 9.1 + Prom 57568 - 57627 9.9 66 19 Op 1 . + CDS 57703 - 58950 1033 ## COG0438 Glycosyltransferase + Term 58951 - 58986 3.1 + Prom 58953 - 59012 7.5 67 19 Op 2 . + CDS 59101 - 59631 498 ## COG2020 Putative protein-S-isoprenylcysteine methyltransferase + Term 59748 - 59797 9.1 - Term 59735 - 59787 11.4 68 20 Tu 1 . - CDS 59788 - 61014 852 ## PROTEIN SUPPORTED gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 - Prom 61221 - 61280 9.4 + Prom 61217 - 61276 15.0 69 21 Op 1 . + CDS 61330 - 62484 400 ## PROTEIN SUPPORTED gi|225093729|ref|YP_002662469.1| ribosomal protein S15 70 21 Op 2 . + CDS 62549 - 62893 393 ## COG2337 Growth inhibitor + Term 62910 - 62949 6.1 + Prom 62920 - 62979 5.6 71 22 Op 1 . + CDS 63003 - 65084 2193 ## Clos_2271 hypothetical protein 72 22 Op 2 . + CDS 65074 - 66174 999 ## COG2327 Uncharacterized conserved protein 73 22 Op 3 . + CDS 66178 - 66933 973 ## COG1922 Teichoic acid biosynthesis proteins 74 22 Op 4 . + CDS 66945 - 68894 2410 ## COG0021 Transketolase + Term 68895 - 68941 10.9 - Term 68875 - 68935 19.1 75 23 Tu 1 . - CDS 68957 - 70093 930 ## COG5438 Predicted multitransmembrane protein - Prom 70187 - 70246 9.4 + Prom 70068 - 70127 9.0 76 24 Tu 1 . + CDS 70218 - 71735 2117 ## COG0519 GMP synthase, PP-ATPase domain/subunit + Term 71877 - 71914 5.1 + Prom 72127 - 72186 4.5 77 25 Tu 1 . + CDS 72240 - 72524 289 ## SZO_12760 hypothetical protein + Prom 72665 - 72724 5.3 78 26 Op 1 . + CDS 72762 - 72980 192 ## Smon_0656 transcriptional regulator, XRE family 79 26 Op 2 3/0.000 + CDS 72981 - 74963 1502 ## COG2189 Adenine specific DNA methylase Mod 80 26 Op 3 . + CDS 74965 - 77574 1545 ## COG3421 Uncharacterized protein conserved in bacteria 81 26 Op 4 . + CDS 77578 - 79218 992 ## MSC_0676 hypothetical protein 82 26 Op 5 . + CDS 79215 - 81338 1479 ## MCCL_0236 hypothetical protein + Term 81342 - 81374 -0.8 + Prom 81440 - 81499 5.2 83 27 Op 1 . + CDS 81542 - 81616 61 ## 84 27 Op 2 . + CDS 81627 - 83561 1442 ## EUBELI_20534 hypothetical protein + Prom 83601 - 83660 1.6 85 28 Tu 1 . + CDS 83728 - 84339 670 ## EUBELI_01741 hypothetical protein + Prom 84498 - 84557 6.4 86 29 Tu 1 . + CDS 84595 - 85146 737 ## Vpar_1793 conserved protein/domain typically associated with flavoprotein oxygenase DIM6/NTAB family-like protein + Term 85248 - 85300 -0.9 87 30 Tu 1 . - CDS 85299 - 85454 152 ## gi|299143882|ref|ZP_07036962.1| putative carbamoylphosphate synthase large subunit short form - Prom 85493 - 85552 8.0 + Prom 85492 - 85551 5.8 88 31 Op 1 2/0.000 + CDS 85770 - 86573 726 ## COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 89 31 Op 2 . + CDS 86527 - 87543 487 ## COG0846 NAD-dependent protein deacetylases, SIR2 family + Prom 87642 - 87701 4.0 90 32 Tu 1 . + CDS 87734 - 88240 567 ## Apre_0714 hypothetical protein + Term 88278 - 88327 -0.8 + Prom 88365 - 88424 7.5 91 33 Tu 1 . + CDS 88456 - 88575 122 ## + Prom 88612 - 88671 4.2 92 34 Op 1 1/0.000 + CDS 88830 - 89984 828 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) 93 34 Op 2 . + CDS 89985 - 90743 925 ## COG1145 Ferredoxin 94 34 Op 3 . + CDS 90789 - 91199 479 ## gi|299143888|ref|ZP_07036968.1| hypothetical protein HMPREF0629_00752 + Term 91308 - 91363 6.0 + Prom 91383 - 91442 8.7 95 35 Op 1 1/0.000 + CDS 91664 - 93436 1889 ## COG1864 DNA/RNA endonuclease G, NUC1 96 35 Op 2 . + CDS 93455 - 94408 1014 ## COG4870 Cysteine protease + Term 94462 - 94520 11.2 + Prom 94661 - 94720 6.5 97 36 Tu 1 . + CDS 94761 - 95057 336 ## gi|299143891|ref|ZP_07036971.1| hypothetical protein HMPREF0629_00755 + Term 95120 - 95167 7.5 + Prom 95210 - 95269 5.8 98 37 Tu 1 . + CDS 95313 - 96692 881 ## COG1012 NAD-dependent aldehyde dehydrogenases + Term 96816 - 96873 1.0 99 38 Tu 1 . - CDS 96727 - 96885 72 ## - Prom 96987 - 97046 1.8 + Prom 97184 - 97243 9.8 100 39 Tu 1 . + CDS 97386 - 100439 3833 ## COG4932 Predicted outer membrane protein + Term 100514 - 100560 9.2 + Prom 100832 - 100891 9.6 101 40 Op 1 . + CDS 100924 - 101964 1038 ## COG0420 DNA repair exonuclease 102 40 Op 2 . + CDS 101924 - 104272 1890 ## Cphy_0103 hypothetical protein 103 40 Op 3 . + CDS 104275 - 104958 461 ## COG1768 Predicted phosphohydrolase 104 40 Op 4 . + CDS 104955 - 105503 681 ## COG1437 Adenylate cyclase, class 2 (thermophilic) 105 40 Op 5 . + CDS 105553 - 107907 2831 ## COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase + Term 107913 - 107973 14.6 + Prom 107909 - 107968 11.4 106 41 Tu 1 . + CDS 107994 - 108236 87 ## + Prom 108678 - 108737 11.0 107 42 Tu 1 . + CDS 108878 - 108998 60 ## Predicted protein(s) >gi|289656164|gb|ADCS01000026.1| GENE 1 202 - 1389 1263 395 aa, chain + ## HITS:1 COG:CAC0998 KEGG:ns NR:ns ## COG: CAC0998 COG0460 # Protein_GI_number: 15894285 # Func_class: E Amino acid transport and metabolism # Function: Homoserine dehydrogenase # Organism: Clostridium acetobutylicum # 2 345 4 356 429 214 37.0 3e-55 MIKIALLGFGTVGKGTYEILNKNRENIKKIVSDDVVVTKILKRNLNFETDLDKKLFTDNF EDIINDEEILLIVEMTGDLENSYMYIKRAIENKKNVVTANKAVVSEYFEEFTELAKKNNV AFLYESSVAASLPIITPLKSQSVINDIYRVRGILNGTSNFLLSNMELENKDYSDVLKQAQ DLGYAEAEPFDDVEGIDALRKLRILSTIAFKSPIKNENILHYGIGSISKVDIEYFKNNNL RVKLVAESKLDDKGYTSIVEPVILSRDDSLFNINDTNNIVEIFGDNYDSLSVAGQGAGSF QTGNAVVIDIIDALCKNYIDLEFNRDLKNMSENMEGIYYLRISNKFSIDDSLIDNLNNMG ENIVIKTKKIKRNILFEQLKNIPEKEYFVGRYEIN >gi|289656164|gb|ADCS01000026.1| GENE 2 1514 - 1840 286 108 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299143808|ref|ZP_07036888.1| ## NR: gi|299143808|ref|ZP_07036888.1| serine/threonine-protein kinase Tel1 [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 108 5 112 112 196 99.0 3e-49 MSLWTTEAKKQIGKLYELNNIGDKKAIYNLFSSDFKNSYTLDEFLKSKKFRVLDIGRLRD IICVQSCGEKILVRCKIYIGGCELIHNFKCIVEKNELKIIFERFFIRN >gi|289656164|gb|ADCS01000026.1| GENE 3 1852 - 5160 4539 1102 aa, chain + ## HITS:1 COG:BH3865_1 KEGG:ns NR:ns ## COG: BH3865_1 COG2866 # Protein_GI_number: 15616427 # Func_class: E Amino acid transport and metabolism # Function: Predicted carboxypeptidase # Organism: Bacillus halodurans # 32 370 40 381 381 262 37.0 2e-69 MKKSKRTISILLSFLMMLSVLGSFPKVALAAEMKLSQNEIQVTKKGKVEIDVDFGKEVKA ENLIWTLDNKDVKEWKSFNEKTAKYDLKPWISISGVKVDGTKVHAVLENDLPYGVDTTDH RPYPRWTFETLMGTYPLKVTDRESNISVTAQLKINNYEGFHHYDEIKPHLDKIIESGNKK GDRYFEYQSIGKSSQGRDMHFIIVAKDRAAVDNYLNNTFVAAHTNPQGLIDKINNKTMGN YQVPIFINNVHPDESPGVDAQINFLERLANNDEISFNTTNAGAKKSLKVEDILDNFILLF DITQNPDGKQNNKRENGYNLDLNRDNVYQTQEETKALAKTFAKYDPIAFLDLHGFVKDFL IEPCTPPHEPNFEYDLLMGGIRDPQTKDVKGAPGAIEHARHMGNIAIANTKYESFIIPMF DYGDGWDDGFLGYTGVFALIHGTLGHTVEIPDQNEDGMKAHVHTVIGSIDYILNNKDALY KNQLTVFKRGLENEDNKGVDTWHLDPNGKQIGRPRGNNANFFPDYYILPLDSANQKNDLE VYNMIEYFLRNGVKVYKSTQEVEYKGVKYPAGSIILPLNQVKKSLVNSALFTGTDESAWG AMYAELVLNFPAMRGFDRVEVRQKGLFDGKMSEVTSAIAKPETQLNGLDSEKTLIRNTNN DVTRLVNKMLANNAKVEIVTQKSKTASAGDFVVKTSDLKANVSGLYVKAEALKDEVATKE LTAPKIYITPSGSDYASTTDSTRFVLKDLGFNLVKNAIDANTIVDSSGQVKKEEIDGKNY IAIGGEALAAAKENKLYPISIKMNEDGEGNEGLLKAKYDISSPLTGMYNTDDLSYIASGT VITKANPSAKVFAKVKDSSDFYIQGWWPNHGFVRDQILGFADKYNGTNFVFFAEDVTNKA HTAHLFRQLSNSIYAVNNDTFKEGNGLKSETSGLKDIKGHWAENAINSLVEKGILNGYQD MTFKPDGKITRAEFVKTIVCAFDLKSNEKVTFKDIEKHWAKNYIEVAAALKIVNGYSAEE FGPNKNITREEMSKIIANVLKLSEKTELKFTDNDKISEWAKESVEKVVKAELVKGYPDSS FKPNNNVTRAESATIIERALNK >gi|289656164|gb|ADCS01000026.1| GENE 4 5309 - 5638 398 109 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299143809|ref|ZP_07036889.1| ## NR: gi|299143809|ref|ZP_07036889.1| hypothetical protein HMPREF0629_00667 [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 109 1 109 109 174 100.0 2e-42 MRIDSLALKYLHENSIDYIVIKSTMDIQFLGCACGGGTEAKIVPVVEEGRGEFKDSSKFI LEVIDNINVYIGKSILNNLDDNSEVSVESKFFKKKLVVKNFKSEVLNKI >gi|289656164|gb|ADCS01000026.1| GENE 5 5651 - 6601 1015 316 aa, chain + ## HITS:1 COG:APE1831 KEGG:ns NR:ns ## COG: APE1831 COG1052 # Protein_GI_number: 14601656 # Func_class: C Energy production and conversion; H Coenzyme transport and metabolism; R General function prediction only # Function: Lactate dehydrogenase and related dehydrogenases # Organism: Aeropyrum pernix # 2 315 17 335 347 263 43.0 3e-70 MKIFVTSKVPKRSLRILEENFELDYNDSLVPLTKEQIIDRIGNVDGLLCPLSDKIDSDIM GKSKNLKIIANYGAGFDNIDIETAKNMGITVTNSPTSSSAVSTAEFTFALILALSRRLIS GEKSLKAGEFLGWRPTYFLGNELRNKTLGIVGMGNIGKNLAKRALSFEMNVIYYSRNRKN DIENMGVVYKELEDVIKESDFLSLHTAFSPELRHMISIREFDLMKKSAYLINAARGPLVD EKALADAIRSEKIAGAALDVYEFEPSVSKELFEFENVLLEPHLGNATYEAREEMGFIAVN NLIDFKNGKVPRNKIV >gi|289656164|gb|ADCS01000026.1| GENE 6 6614 - 7057 694 147 aa, chain + ## HITS:1 COG:rpiB KEGG:ns NR:ns ## COG: rpiB COG0698 # Protein_GI_number: 16131916 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose 5-phosphate isomerase RpiB # Organism: Escherichia coli K12 # 2 145 3 146 149 170 54.0 6e-43 MRVGFGSDHAGFFLKEILKKHLEEKGFECVDYGTYSEDRVDYPDYGKLVGEKVASGEVDK GVLICGTGIGISISANKVKGVRAAVCSEPYSAKMTVRHNDANIIAMGARVVGEDVAKMIV DTFFSEEFEGGRHLDRVNKMMKIEEEN >gi|289656164|gb|ADCS01000026.1| GENE 7 7117 - 8619 1538 500 aa, chain + ## HITS:1 COG:CAC2556 KEGG:ns NR:ns ## COG: CAC2556 COG4124 # Protein_GI_number: 15895818 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-mannanase # Organism: Clostridium acetobutylicum # 288 499 105 309 498 77 27.0 6e-14 MLKKILLIFIFVLCVSSKVHAIENYEVVELNDNTSIFKNYVDGYSIQIPKKSVLKFDDNF YKSEINFKDTSVKIFVEKFNSNSKYDSYLYYTLKGIRDSKYEHNITFDGIKSSSIGNMNV IEFNRRKLSKINGDKNNYFIAIGNLPDERAVTFMVKSEREINKKFIMSMIDSFKLNSEIK PYKIKKVRNNTTHYHWDIETANLYREDFLYSDKVTWGLFVHDFWRSPDMSNIENKIESKF KYALLYHSFNFPNAQVRQAIDYCKVSNRNLELTFQTDIKNNKNLIYDVLDGKKDEFLKEL ALIISSEQYPTIFRLANEMNGDWCSYCAWNTGLDSDIYVEFYNYVYNIFEEAGANKYLIY VFNPNGRSFPNYKYNNESMYRPSSSRYDILGLTLYNTGTYYMDEKWEEFDSLYDNLYRDC IKKYDKPFMITEFACSSIGGDKIKWTENMLDVLSDKYKKIKVAIWFNGIDLDENKNPARI YKIDTPKETLDIFKKYFKGK >gi|289656164|gb|ADCS01000026.1| GENE 8 9095 - 10690 1773 531 aa, chain + ## HITS:1 COG:BS_ctrA KEGG:ns NR:ns ## COG: BS_ctrA COG0504 # Protein_GI_number: 16080768 # Func_class: F Nucleotide transport and metabolism # Function: CTP synthase (UTP-ammonia lyase) # Organism: Bacillus subtilis # 1 530 1 530 535 666 60.0 0 MTKFIFVTGGVVSGIGKGISAASIGRLLKDRGLSVFMQKFDPYINIDPGTMSPYQHGEVF VTKDGAETDLDLGHYERFIDEELTKRASITTGKVYSKVINKERRGDYNGATVQVIPHITD EIKKSVYKAGKESGADIIITEIGGTVGDIESQPFLEAIRQIHSENKAEDVLFVHTVLVPK IPGSDELKTKPTQHSFKVLMSYGIKADIIITRSDGEITDSIKEKISLFCDVPKEAIIESK TVELIYEVPIIFHEQGIDEYILNKLNLSNQPQSKKSWSKMVCEFKKAKREVCIALVGKYT ELHDAYLSVTQALFDAGYANGARVKIKWINAESLEKGNVEDIFKDVDGIIVPGGFGSRGT EGMISASKYARENNVPYFGICYGMQIVLIDIARNKLGFKGANSTEIDPETTYPIIDLLEN QKTVENLGGTLRLGNYECTLEEGTKARELYGVEKVVERHRHRYEFNNRFRGDIRKEGVIF SGINEDLDLVEIIELNSHKFFVACQFHPEFKSRPNKIHPLFDGFIKASLEK >gi|289656164|gb|ADCS01000026.1| GENE 9 10779 - 11147 395 122 aa, chain + ## HITS:1 COG:lin2788 KEGG:ns NR:ns ## COG: lin2788 COG5341 # Protein_GI_number: 16801849 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 30 114 42 131 144 66 37.0 2e-11 MKKGDYVVILFIVLLAVSVFGITHRKIENNGKLYAVIKVDGKEIARYEMGVKKEIHHIDS KYGHNEIEIYDNSVKISESNCRDKICIHMGSINRQGQSVICLPNRLIVTIEGEENEVDVV LH >gi|289656164|gb|ADCS01000026.1| GENE 10 11159 - 11656 537 165 aa, chain + ## HITS:1 COG:lin2789 KEGG:ns NR:ns ## COG: lin2789 COG4769 # Protein_GI_number: 16801850 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 1 158 7 165 180 90 36.0 1e-18 MIFLALLVALGIVIGLFENVIALPVALPGAKLGLSNIVVLVSIVSFGFVEGLIVAFLKSI LLIAVTGSVSSFIFSFTGAMLSSFIMILALKYLKKYVSLIGVSLLGSAFHNIGQVLAASF ILKSLAIFSYLPLLLILGIFTGYFVGLSSGYIVENLNSNFKGRLN >gi|289656164|gb|ADCS01000026.1| GENE 11 11653 - 12252 801 199 aa, chain + ## HITS:1 COG:FN0759 KEGG:ns NR:ns ## COG: FN0759 COG0424 # Protein_GI_number: 19704094 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Nucleotide-binding protein implicated in inhibition of septum formation # Organism: Fusobacterium nucleatum # 2 192 1 192 192 142 45.0 4e-34 MIILASKSSRRQEILSRFLKFEVISYEIEENNLYYSSPEQLVMALSFEKGIEVAKDYKND IVISADTIVSIESCVLGKPLDREDAFEMIRKLSGIEHEVLTGYSLFNLSKNIKYTDYAVS KVKFKNLSDNQINEYLDTNEYVDKAGAYGIQGYGSVLVDYIIGDFDNIVGFPISKIADDL SRLFGISVLKEVIHNGEET >gi|289656164|gb|ADCS01000026.1| GENE 12 12236 - 12958 766 240 aa, chain + ## HITS:1 COG:BH3032 KEGG:ns NR:ns ## COG: BH3032 COG2003 # Protein_GI_number: 15615594 # Func_class: L Replication, recombination and repair # Function: DNA repair proteins # Organism: Bacillus halodurans # 8 240 5 229 232 181 39.0 9e-46 MEKKLSRTYSIKDMPIDDRPQEKLMKLGADSLTNAELLALIIRTGTKTKTSVEISQEILN TISIGRDKNSSAISFLKNISMADLMEVKGIGESKAAMILAAITLASRINRESVFKKEKIS SPAILVDYVMDEMSSLQIEEFRIVVLNTKKEIENIKCISKGIINATLVHPREVFKTAIDE RAHTIILLHNHPSGDPTPSREDFELTDKLSGTGKVIGIEVIDHIIIGNKKYYSFLEHGKI >gi|289656164|gb|ADCS01000026.1| GENE 13 12960 - 14039 1060 359 aa, chain + ## HITS:1 COG:XF1125 KEGG:ns NR:ns ## COG: XF1125 COG1530 # Protein_GI_number: 15837727 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribonucleases G and E # Organism: Xylella fastidiosa 9a5c # 9 357 13 409 497 154 28.0 4e-37 MGKYYIDNDLKVAIYYDGKINRIQDLEESRIRDIYRGRVENIVHSMNAVFVNIGTENGYL NLEDIDGDIKVGDDILVQIKKIPEENKLVKLTMELSVDGKYIIYFPMEKFVKFSKNLNFE KKNELKKFAVKNNLRGVLFRTNANNAQTDEILEEYSELFDIGNKLIREKNLRPTPKLIYC KSGVEDFLRDNVVDEDVIINDIQLYNTYKNKYNLIYDKDFKIIYNREILEDYKKLFLKTV KLKSGANIVIEETAALSSIDVNTANFVGNLDFEDTIFKVNEEAAVEIARQIILRNISGII IIDFIDMKTYSEKKKILKILQREFKKDFSRTVVYGFTKLNLVEISRKNLGVKLKNKLEV >gi|289656164|gb|ADCS01000026.1| GENE 14 14042 - 14587 383 181 aa, chain + ## HITS:1 COG:no KEGG:CLJ_B3153 NR:ns ## KEGG: CLJ_B3153 # Name: not_defined # Def: lipase/acylhydrolase, GDSL family # Organism: C.botulinum_Ba4 # Pathway: not_defined # 1 172 1 181 190 69 30.0 6e-11 MIINAFGDSVVAGFGVGRENSFVNIDRKDIIINNFGINGTTSLDVLNLINRVDFKDTFLL YVGINDFLSEISFYDVEKNIERIADSITGRCSKIVLCTPHFLSSDATYGWCNSSIFLSVN RKLELYQEFLVNLARCREFNIINYYKILGNYKDYDSLFFDGIHPTISTHKIMREELKKVV L >gi|289656164|gb|ADCS01000026.1| GENE 15 14584 - 15651 756 355 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299143820|ref|ZP_07036900.1| ## NR: gi|299143820|ref|ZP_07036900.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 355 1 355 355 555 100.0 1e-156 MKIIGKFSLSNFTKREKVLIGIFIAILLELIFYLVFISPVFVKYKSINFKIEETKNEIST KNKIIENINFLNQKNDSMSKIDRFNYHKSFDEGNSDYINLLLKDIAEIQNVNSNEVNLTT DRKNISGVLEISKQYLVDSISIQREDEEIYSVYIKINDEKMDTQMPKVIKSEKKIDESIN LKKEFLKSRIENKTSFSSEEQLTEKKIEKISNENSGKNSILDNNIKNNLGIDYENATLLY ASKNNGSMFAKDNKDELVIYYELHNEIGSNEILILFNQELELKNLKFKLYAPDNFDGEFG IYGREKISLKDKVKCGEVNDINIENVGDFVGIYYKLNEGERENGIFSVGDFEGML >gi|289656164|gb|ADCS01000026.1| GENE 16 15648 - 15953 226 101 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299143821|ref|ZP_07036901.1| ## NR: gi|299143821|ref|ZP_07036901.1| putative type IV pilus biogenesis protein [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 101 1 101 101 146 100.0 5e-34 MKKGFTLIELILTISIIIIILSVGIYKSSIVSDYEALKSMDELFENLRYSRNLAISQKIH QKLHFLKITAMKSNVTNSEKNIGCHKKLICLWLMTSTEEKV >gi|289656164|gb|ADCS01000026.1| GENE 17 15914 - 16075 168 53 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299143822|ref|ZP_07036902.1| ## NR: gi|299143822|ref|ZP_07036902.1| hypothetical protein HMPREF0629_00680 [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 53 1 53 53 86 100.0 5e-16 MSMANDKYGRKSITFTKSGAPSYSNAQTITLRYGNKEYFITIEPVTGKVNFKK >gi|289656164|gb|ADCS01000026.1| GENE 18 16072 - 16422 305 116 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299143823|ref|ZP_07036903.1| ## NR: gi|299143823|ref|ZP_07036903.1| fimbrial protein [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 116 1 116 116 171 100.0 1e-41 MKKGFMLLDVILSIAIIAIIASVLIPASINFISSREKIMDISDSYMMLKNQMEVVGASKY YGTGTYDIVIPKEYKYYIQEDNISDNLTKIKIILYRDGGEKIEVEEIFPSKGLYSN >gi|289656164|gb|ADCS01000026.1| GENE 19 16361 - 16912 470 183 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299143824|ref|ZP_07036904.1| ## NR: gi|299143824|ref|ZP_07036904.1| type 4 fimbrial biogenesis pilw-related protein transmembrane [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 183 1 183 183 290 100.0 4e-77 MGAKKLRSKKYFRQKGFTLIELVLAIGISMIIFSVLSSIFGLVAKTITISSSGNEFLNSS YFSSNYIYREVASADYIIKNENKNSLGFALVNVFNAKKGKKYRYVYYVFSDSSIKRKALV RNSIFEGNLITGKTGTNIIAKNIKSVDSTVNDEIIKLNIEHELNGISKKYEIEIINRTFG EIK >gi|289656164|gb|ADCS01000026.1| GENE 20 16909 - 17874 786 321 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299143825|ref|ZP_07036905.1| ## NR: gi|299143825|ref|ZP_07036905.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 321 1 321 321 530 100.0 1e-149 MRKNGYTYLITILVIAVIVIAISYMIGIFNNNLIIYKNERDSIQSGMYAESMINISISDY DKLKEVCRKIYYDGKNDFLNIKPEYTVDDIEIKKLEICNDSTFSKNGFLITSVIEYNGIE ESCFAKGEIVNSLFTMGKSILNPRILEGDEINNLKETEIDFNDANKSIARVIEISQDCYM KKDGLNIIIYTEEIEETEFGKTVKENILHKYSCYDDIYLKQIGGTVAIEDVVKIYGIVEL SSVYLYKDIEIQGILNLKGNINYIDSKAQINVKGITINTCGNSENNLNSEYDFDLVNRYS EHIKNFIRPKINTIQKSLPEI >gi|289656164|gb|ADCS01000026.1| GENE 21 17943 - 18500 831 185 aa, chain + ## HITS:1 COG:CAC2094 KEGG:ns NR:ns ## COG: CAC2094 COG0231 # Protein_GI_number: 15895364 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) # Organism: Clostridium acetobutylicum # 1 185 1 185 186 231 62.0 6e-61 MITAGDFRKGVTFEMDGDVYEVIDFQHVKPGKGAAFVRTKIKSVLTGGIKDTTFNPSEKY EKAVIETREMQYLYKDGDLYYFMDNETYEQVPMEEDMVEEALNFMRENDVAVINFYQGKP FRVAPANFVELEVTQTEPGVKGDTSSGGTKPATVETGFTLNVPLFVNTGDKIRIDTRTGE YMSRV >gi|289656164|gb|ADCS01000026.1| GENE 22 18510 - 18848 477 112 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299143827|ref|ZP_07036907.1| ## NR: gi|299143827|ref|ZP_07036907.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 70 1 70 112 87 100.0 3e-16 MENILNRIAYLEGLADGYGIDESSKEGKLLVEIIDVLSEMAEEIRDAQEDLEEYVDIIEE DLSSLEDYVYDESDDDDFDLYDDDFDFDDDSYYDELDECCNGDCDCCDEVED >gi|289656164|gb|ADCS01000026.1| GENE 23 18947 - 19327 589 126 aa, chain + ## HITS:1 COG:CAC2085 KEGG:ns NR:ns ## COG: CAC2085 COG1302 # Protein_GI_number: 15895355 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 13 123 11 122 131 73 43.0 6e-14 MSEKYLVDAMSDGNVKIADDVIATIAAVATEGVEGVVEMQSTLKASVTDMLGVKNLARGV KVSVGEQEAVIDMFITVLYGKNIVEICKNVQEKVKEAVENMTGLDVVEVNIHVSGIALTE KEKARA >gi|289656164|gb|ADCS01000026.1| GENE 24 19330 - 19755 373 141 aa, chain + ## HITS:1 COG:BH2785 KEGG:ns NR:ns ## COG: BH2785 COG0781 # Protein_GI_number: 15615348 # Func_class: K Transcription # Function: Transcription termination factor # Organism: Bacillus halodurans # 1 125 1 122 134 99 36.0 1e-21 MSRKKARIGQMQVLYQMDITDDFSSDGLNTFLENFEFSEEEKDYINSTIPEIIKNLENID QTIQSHLEGWSLNRLAKVDKEVLRIAIYEILYRDDIPEEVSINEAVEISKQFGSSESSKF INGILGSIYRSMHVENQREQQ >gi|289656164|gb|ADCS01000026.1| GENE 25 19792 - 21054 1211 420 aa, chain + ## HITS:1 COG:CAC2082 KEGG:ns NR:ns ## COG: CAC2082 COG1570 # Protein_GI_number: 15895352 # Func_class: L Replication, recombination and repair # Function: Exonuclease VII, large subunit # Organism: Clostridium acetobutylicum # 1 409 3 395 399 276 41.0 5e-74 MNAIKVRELNKYIKKYIAMDYLLADVTVEGEISNFKKHTNGNLYFSLKDDYAKINAIMYF SEACSINFSPKNGDSVIVKGSVSIFEKDGLINLYVRDMKIVGLGDLYERYLSLKESLYKE GIFDESKKKKIPYFPQRVGVITSPTGAAIRDIINVLSRRNPAVDILLYPSNVQGDFATSQ LIEGLNYFEKNPVDVIIIGRGGGSLEELFCFNDEELARKIYSMSIPIISAVGHEIDYVIS DFVSDLRAPTPSAAAEMVSMSKEDLENRLSLLKNRLDKILQQKVEDNTSRIDLLGEILNI KFEKFYANKLESLKKLDLENSKWKLIYKVKYKKQNLELTFNNLDMKFNKKISINKNLLYN IGEKLRSSKFTQRIYLKNKFGAIVSSVKDLSVGDEVLISFADGTATANISKTKVGSGIDE >gi|289656164|gb|ADCS01000026.1| GENE 26 21047 - 21280 363 77 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299143831|ref|ZP_07036911.1| ## NR: gi|299143831|ref|ZP_07036911.1| exodeoxyribonuclease 7 small subunit [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 77 1 77 77 99 100.0 6e-20 MSESYESAYSRLENIVKDLESDNISLEESISKYEEGLKLFKYCSKILNEYEGKVKVLMQE GTEVEEREFKSGDDLYE >gi|289656164|gb|ADCS01000026.1| GENE 27 21273 - 22130 1059 285 aa, chain + ## HITS:1 COG:CAC2080 KEGG:ns NR:ns ## COG: CAC2080 COG0142 # Protein_GI_number: 15895350 # Func_class: H Coenzyme transport and metabolism # Function: Geranylgeranyl pyrophosphate synthase # Organism: Clostridium acetobutylicum # 1 285 1 289 289 211 43.0 2e-54 MNNYSEIIELINNSIYRSFTAADEYQKKVYESMSYSLSSGGKRVRPLLSLLAYKSVSGSE DFTKILPFATAIELIHTYSLIHDDLPAMDNDDLRRGKPTNHKVYSEAIAILAGDGLLNMS AEVMSRELDKYDEMDELKRAIKAMKYIFTASGVHGMIGGQVIDMEYGYNMNLDICESMYK LKTAALIKAAIVSGAIIAGASDEEIATFEEYANCIGIAYQIRDDILDLEADSKKEKNTMV NFRSNDELVSRIEGLTARAQEQINSLQYDTSELQEFAKILMNRGR >gi|289656164|gb|ADCS01000026.1| GENE 28 22132 - 22923 919 263 aa, chain + ## HITS:1 COG:CAC2076 KEGG:ns NR:ns ## COG: CAC2076 COG1189 # Protein_GI_number: 15895346 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted rRNA methylase # Organism: Clostridium acetobutylicum # 3 262 5 263 267 255 51.0 5e-68 MGKIRADVFLVENGLTGSREKAKRLIMSGEVFIGTQRVEKAGELIDKESNVTIKSNSQKY VSRGGFKLEKAIEMYYIDLNDKICADIGASTGGFTHCMLLNGAKKVYAIDVGYNQLDYSL RVDDRVISMEKTNIRLFDTELIKDEIDFISIDVSFISLELVLPKATELLKDNGQLVALIK PQFEAGKEKVGKKGIVKNQSVHREVLEKIISLAKKLELRICGLTFSPIKGTTGNIEFLIY CEKSKNEDLDYNLDELLKESTQI >gi|289656164|gb|ADCS01000026.1| GENE 29 22934 - 24598 1661 554 aa, chain + ## HITS:1 COG:L0264 KEGG:ns NR:ns ## COG: L0264 COG0497 # Protein_GI_number: 15672842 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA repair # Organism: Lactococcus lactis # 1 549 1 553 555 335 37.0 2e-91 MLLELSIKNFAIIEDLRVEFEKGLNVITGETGSGKSIIIDALSMVLGARASKDVIKSGKE FAFIEAIFSNDGILKTELEKYDIDNDDLIVISREIRIDRPSITKINGRTITGSVLIQITS KLIDIFAQHENISLMNNINQRKLIDSFGDDSHIELLNNLTILIEQLHKLKEDFKIKSSQN KNRDREIDLLKYQAEEIKNANLSEEDETIDDKYKIINNISEISRQAQSATAILNSSYDQA NIEDLFDSVIGNLNFIIKYDKNMQDCYDELEDIRYRIKDISYTIEKYLSSLEYSEEELRF LENRIDTVNTLKKKYGNKISDIYSFLEEVENRLHFLENFDDEIKKLEDEISFVNNQALDI ARKISENRKSVSKFLEHTVAEELKELNIKNARFKIDFREKEISKDGIDDIEFMIVTNAGE DFKSLTDTASGGEMSRIMLGFKSIIAQKDDIQTLIFDEIDTGISGRTAQIVGNKIKKLAK DRQVIVISHLPQIVSLADTHYLIEKLERINETTSRIRKLNYNEREMELARLIGGFMISDA TISAAREMLFNKEK >gi|289656164|gb|ADCS01000026.1| GENE 30 24600 - 25139 589 179 aa, chain + ## HITS:1 COG:TM1181 KEGG:ns NR:ns ## COG: TM1181 COG0494 # Protein_GI_number: 15643937 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Thermotoga maritima # 5 169 5 168 179 146 47.0 2e-35 MDKTERTMKTDRIYDGKILSLRVETVELPDKKYSKREIIEHPPAVVIVPVTSNNEIIMIK QFRKPIEKVIYEVPAGLLEINESPIDGAIRELKEETGYHADKVEYMTEFYSSPGFCTEKM YIFSAENLEFEEQKLDEDEFIDLEIVPFDRALKMIKLGEIMDAKTIAGILIYNEMRNDE >gi|289656164|gb|ADCS01000026.1| GENE 31 25139 - 25942 1084 267 aa, chain + ## HITS:1 COG:lin2067 KEGG:ns NR:ns ## COG: lin2067 COG0005 # Protein_GI_number: 16801133 # Func_class: F Nucleotide transport and metabolism # Function: Purine nucleoside phosphorylase # Organism: Listeria innocua # 2 267 3 271 272 293 52.0 3e-79 MLEKSVEYIKSKIKVNPEIAIILGSGLGDFVDTIENKFAINYEDIPGFPNSTVVGHSGKL IFGNVGDKFIVAMQGRIHYYEGQGIDKTVYPMKVLCELGIKKLIVTNASGGVNKSFKPSD IMLIKDHINYTGVNPLIGKNEDDKGPRFLDMTYTYSKELRDKAKEVAKNIDLDIKEGVYM WFTGPCYETPSEVKLAAIVGADAVGMSTVPEVIIARHRGVDVLGFSCITNMAAGILEQPL NHEEVIEVSNKIKDKFAQYVREVIKVI >gi|289656164|gb|ADCS01000026.1| GENE 32 25942 - 27252 1531 436 aa, chain + ## HITS:1 COG:CAC1546 KEGG:ns NR:ns ## COG: CAC1546 COG0213 # Protein_GI_number: 15894824 # Func_class: F Nucleotide transport and metabolism # Function: Thymidine phosphorylase # Organism: Clostridium acetobutylicum # 1 417 1 423 433 438 57.0 1e-122 MNIYDIIEKKKQSLELNKEEIEYFINGYTNGTIPDYQISALLMAIYFRGLNIEETYYLTN AMINSGDTIDLSPIDGIKVDKHSTGGVGDTTSLILGPLVASCGVPFAKMSGRGLGHTGGT LDKLESIPGMSIDLSIEKFINNTNKIKMAICGQTSDITPADKKLYALRDTTATVDNVSLI SSSIMSKKIAVGADCLVLDVKVGSGAFMKNVEDARELSKMMVDLGEKFNRKTVAVITNMD EPLGLAVGNSLEVIEAIDTLKGRGPKDLEDLCLSLGAKLLVLANKCNDEKSARILLEENI KNGLAFEKFREFIEMQGGDVSYVDDTSKFKLSSRKREVFSEKSGYVTKIDALEIGEISKN LGAGRETKESEIDLGAGIVLNKKIDDYVEAGDPLATIYTERKEQIDKAVAGIKEAYKLGE KNSKAYKIIIEEIQKC >gi|289656164|gb|ADCS01000026.1| GENE 33 27246 - 27881 741 211 aa, chain + ## HITS:1 COG:aq_1853 KEGG:ns NR:ns ## COG: aq_1853 COG1994 # Protein_GI_number: 15606892 # Func_class: R General function prediction only # Function: Zn-dependent proteases # Organism: Aquifex aeolicus # 10 198 6 213 217 130 44.0 1e-30 MLNFSNLDLKSVLFTIIALLIAIIPHEIAHGYAAYLLGDDTAKTDGRLSLNPINHIDPIG LISMVILRFGWAKAVPINPFKFKINRKIGTIIVSLAGVAANFILAFIFSILFVGAAINKN WLEPLFAEILWYNVMLGVFNLVPLPPLDGSKVIASLLPSKLEYMFYKYEKYLYIILVALL MTGVVNKIIAPIVLKVLNELVTIGINIWDIM >gi|289656164|gb|ADCS01000026.1| GENE 34 27866 - 28588 870 240 aa, chain + ## HITS:1 COG:SA1326 KEGG:ns NR:ns ## COG: SA1326 COG1354 # Protein_GI_number: 15927076 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 3 234 10 244 251 130 36.0 2e-30 MGYNVNLKVYEGPMELLLDLIRKNEIDIYDIPIHIITSEFLAYIAAVKELNMELTSDFLV MASTLLEIKSKMLLPKIKLDDEEIDEEDPREQLVQKILEYEKYKEVSEKLRESEKYELKA FYKLQEDFSDIDRLEFLNNCNVKNLHKALQNIIKRNKTASVTNIAPEEFPVQRANEIILE YLESKDKFLFSELLGEYSFKAEIIAYFLSLLEFIKIGRVSARQTGNYSDIEIIRRDDFGR >gi|289656164|gb|ADCS01000026.1| GENE 35 28578 - 29120 673 180 aa, chain + ## HITS:1 COG:CAC2060 KEGG:ns NR:ns ## COG: CAC2060 COG1386 # Protein_GI_number: 15895330 # Func_class: K Transcription # Function: Predicted transcriptional regulator containing the HTH domain # Organism: Clostridium acetobutylicum # 8 169 22 183 202 127 45.0 1e-29 MEDEKIISIIEGILFAWAEPVSVIELSKVIGQSQNKIRGLLQIIKEKYEKADSGLRLVIL NDSYQISTKPENYDYISEFVSGKNKKNLSNAALETLSIIAYKQPVTKLEVEEIRGVKCDS TIKALSELGLIEISGQLEKIGRPNIYITTDEFLKKFGLSSLEELPEIEEDEQIKMTFLEE >gi|289656164|gb|ADCS01000026.1| GENE 36 29138 - 29827 874 229 aa, chain + ## HITS:1 COG:CAC1851 KEGG:ns NR:ns ## COG: CAC1851 COG1187 # Protein_GI_number: 15895126 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases # Organism: Clostridium acetobutylicum # 1 228 9 236 236 213 49.0 3e-55 MAHSGAASRRKSEEYILDGRVKVNGKIVTELGYVVDENKDKVYLDDKRLKIIKENTYIAL NKPMGIVSTVKDEKDRKTVVDLIDGSTRLYPIGRLDIDTTGLIILTDDGAITNKLTHPKN EINKTYIATVEGKPTKTELDMIRKGIKVGAEKFSPAKVKILKSFEADSIIEVIIHEGKNH EVKLMFDKINHPVKKLKRISIGDIELGDLEIGNFRYLTEDEINYLKRLK >gi|289656164|gb|ADCS01000026.1| GENE 37 29824 - 30390 554 188 aa, chain + ## HITS:1 COG:BH3285 KEGG:ns NR:ns ## COG: BH3285 COG0500 # Protein_GI_number: 15615847 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Bacillus halodurans # 15 187 13 190 190 120 38.0 1e-27 MSLVKYNYRQIVDDIIGNANIVGKVCLDATCGRGNDSLKLLDKIGIKGFLYACDIQEEAI NSTMELLKSKGYENFKLFNKSHTEVFDYIKEPISLIIYNLGYLPKSDKKVVTEADSTILS IERGLNSISKDGIIIVVSYLGHEGSFEERAALEKFLSQLEQKEYMVEKREFFNQQNNPPI VYLIGVRK >gi|289656164|gb|ADCS01000026.1| GENE 38 30387 - 31601 1128 404 aa, chain + ## HITS:1 COG:CAC1849 KEGG:ns NR:ns ## COG: CAC1849 COG2081 # Protein_GI_number: 15895124 # Func_class: R General function prediction only # Function: Predicted flavoproteins # Organism: Clostridium acetobutylicum # 14 402 1 392 393 410 56.0 1e-114 MKNIAVIGGGPSGMMAAYFAAEGNNVTIFEKNEKLGKKLFITGKGRCNITNEKEISEFFE EVPRNEKFLYSAFYSFSNLDLIKLLNSYGLKMKSERGGRIFPSSDKSSDVIATYIKMLKD RNVDVRLNSEVKSVKKNLEYFIINDNFEEKFDSLIIATGGYSYRATGSTGDGYKFARDFD INVEKLYPALIPIELSDEFLDDLQGISLKNVSLSVKQNGKVISEEFGEMLFSHFGITGPI VLRTSSKINRMNKFKLYLDLKPALDFETLDSRILRDFEKFKNKEIKNALFELLPKKLVPV ILKIADIDESMTVNQVTRADRNKLVHSIKEMPLTYKGLLDINAAIITSGGVSVKEIDPST MESKKVKGLYFCGEVLDVEAFTGGFNMQIANSTGYIAGVNAGKK >gi|289656164|gb|ADCS01000026.1| GENE 39 31620 - 32444 731 274 aa, chain - ## HITS:1 COG:YPO3058 KEGG:ns NR:ns ## COG: YPO3058 COG2321 # Protein_GI_number: 16123235 # Func_class: R General function prediction only # Function: Predicted metalloprotease # Organism: Yersinia pestis # 1 269 1 285 288 239 42.0 3e-63 MKWQGRKKNKNVIKGSRVLTPLGGVGLLILMIIFYLLGGNPLEVLNNTDSSSISIEENTE VNKKLENFLSVILTDTTDIWNEIFNRNSLTYREPKLVLYNSSIQSKCGNSTSNMGPFYCP KDESIYIDVSFYNDLKSKYNKLGEFSFAYVLAHEVGHHVQKQLGTLEQVCELKDQLPEKE FNKYVVKLELQADYFAGVFAHYVQNAGYLKEDDIKDIINATENVGDDRVQQQTVESVIPD TFTHGTSEQRIQWFKKGLKYGDINHENIFNDSEL >gi|289656164|gb|ADCS01000026.1| GENE 40 32617 - 33570 996 317 aa, chain + ## HITS:1 COG:BH1974 KEGG:ns NR:ns ## COG: BH1974 COG1975 # Protein_GI_number: 15614537 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family # Organism: Bacillus halodurans # 17 317 16 325 343 109 29.0 8e-24 MIELINRASELFSYKTPFVIATIIYKNGSSPREEGTSMIVTERGLDIGTIGGGVAEYEAI EFSKKLILDEKSDNHKYVLTNNDAESIGMICGGVNIIHFEYVSPDDFLAGEYFLKIIEEY KNKDVNLLYSTKGNAGFSVEIEDEVCQFTRSGINEKIECDFKIKIEDKFKVFIFGGGHVS KALVPILNYLNLETIVIEDREEFLKEEDFPNSKRILLNYFDLENLEITENDYVCILTRGH KSDREILVKMLEKKPYYIGIIGSRKKAEIMFNSIRGKYDESLINRIHSPIGLSIGAQTPE EISISIAAQIIEKFRNR >gi|289656164|gb|ADCS01000026.1| GENE 41 33584 - 34459 803 291 aa, chain + ## HITS:1 COG:no KEGG:Cbei_1987 NR:ns ## KEGG: Cbei_1987 # Name: not_defined # Def: regulatory protein, LysR # Organism: C.beijerinckii # Pathway: not_defined # 19 289 28 309 309 132 29.0 1e-29 MKTCALINSRSPKGSELALKSLKNISNIRKILYAIKSAGVDDVYILVGENYADISSELEK SDAILIYDENYKKHSEFESEIYAMKNINKEYDRVLYTSVRSNLFSIDSIKKLLSYGTFAI GYYKNMQGNVALLPLKEFPKIDVKNNFLIESFQRIRVDWNFVDLDDRDILKNQNDIVFEE TPLRCQIKLTIARDEKFFGPGTSRLLKLIEDTGSVKAAVSAMNISYSKAWNMINTMEKEL GFTVVDRKSGGSGGGESKITAQGKAFLKKYELFLERTKPYIINNFEEIFYI >gi|289656164|gb|ADCS01000026.1| GENE 42 34459 - 35157 701 232 aa, chain + ## HITS:1 COG:no KEGG:Apre_0359 NR:ns ## KEGG: Apre_0359 # Name: not_defined # Def: hypothetical protein # Organism: A.prevotii # Pathway: not_defined # 8 232 4 223 233 124 34.0 4e-27 MKRDDGMLKQLFDVGKKDIISFNGSGGKTTTIFKLARELKDNGKVLVTTSTKIGVPDNLE KGEKFFEDIRNILNNREEFSLAVAGNGILNGKINSIDEKMLNQIAEYFDYILIESDGSKR LPLKAWRDHEPVVLAGTNKTIGIIPIKYVDTEVDDSLIFNSEIFKMKFGFKSKLTFNVIN NIIQSKDGIFKGAIGEKYIFFNQCNSNEDRDKARDLISYLEKYNKDINFRYG >gi|289656164|gb|ADCS01000026.1| GENE 43 35170 - 35745 616 191 aa, chain + ## HITS:1 COG:APE2223 KEGG:ns NR:ns ## COG: APE2223 COG2068 # Protein_GI_number: 14601923 # Func_class: R General function prediction only # Function: Uncharacterized MobA-related protein # Organism: Aeropyrum pernix # 7 188 1 192 205 82 27.0 7e-16 MKLGAIIMASGFSRRMGENKLKLNINNKKIFEYTVDLIYKYDFKDKIIVSNDEEIIRYSQ EKGIRAYKNKNAIVGKSESIKIGISNTQNVDGYMFFVCDQPFLSVETIDEIVSKFKKNNK LITYPVYGNKMGTPVIFPTKYKDELLKLSFDEGGVKLIDKENSQGVLIEREYEYFDIDDK EDYRIAVKYEK >gi|289656164|gb|ADCS01000026.1| GENE 44 35735 - 36523 936 262 aa, chain + ## HITS:1 COG:yqeB KEGG:ns NR:ns ## COG: yqeB COG1975 # Protein_GI_number: 16130777 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family # Organism: Escherichia coli K12 # 3 259 268 525 541 265 50.0 5e-71 MKNNIVVVRGGGDIATGSIQKLYRTGFKVVILEVERPTAIRRTVALSDAIYAGEHSVEDV VAKKVSTIEQIEDCWNKNIVPIKIDPNCEILRELKANFLVDAILAKKNLGTNKSMADRTI ALGPGFCAGVDVDIVIETNRGHNLGRLIFDGFAEKNTGNPGNIMGYTTQRVLYSPGNGII KNRYDIGDVVKEGEIVATVDGKEIRSKLGGVLRGIIRNNSIVFTGMKIGDVDPRTDTNYN TISDKARAVGGAVLEAIMLNKI >gi|289656164|gb|ADCS01000026.1| GENE 45 36559 - 37836 1515 425 aa, chain - ## HITS:1 COG:FN0053 KEGG:ns NR:ns ## COG: FN0053 COG1114 # Protein_GI_number: 19703405 # Func_class: E Amino acid transport and metabolism # Function: Branched-chain amino acid permeases # Organism: Fusobacterium nucleatum # 9 414 8 414 424 224 40.0 2e-58 MKKLNNITLVSGLALFSMFFGAGNLIFPPTIGLATASDWIIAMIGFLTTGVGLVMITVVA TTKAGGSINNLAGKVSPLFAKIFSTAIILCIGPGLAIPRTAATSYEIIQSSLMPNLSPIL SSIIFFAIVLFFVVNPMNIIDRIGKILTPMLLIVLFLIISKGIISPLGVPTGSKSGAFAF SFEGGYQTMDVLAALIFTTMIIKGFENKGITEVNQLNTLTIKSSFIAGFGLCIVYGGLVY IGATVSSLNLNELSKVELLTYITHTLLGTTGNVLLALAMLLACITTAIGLLSTSAQYFTE LTKNKLSYLAFVIIFTLFSAYFAVKGVENIIAISAPVLVALYPVSIVLVISEFFRNKIKS KNFYYGAVLGAFYPTILTILSSFGVSTDAASKLFIGIPDVYVAFNWILPSIVLAFVFNLF GKKSK >gi|289656164|gb|ADCS01000026.1| GENE 46 38079 - 39443 1833 454 aa, chain + ## HITS:1 COG:FN1376 KEGG:ns NR:ns ## COG: FN1376 COG5016 # Protein_GI_number: 19704711 # Func_class: C Energy production and conversion # Function: Pyruvate/oxaloacetate carboxyltransferase # Organism: Fusobacterium nucleatum # 1 448 1 448 448 549 57.0 1e-156 MEKIKFMETVLRDAHQSLMATRMRYSDFEEILPEIDKAGYYSVECWGGATFDSCIRFLNE DPWQRIRDIKKNFKNTKTQMLLRGQNLLGYRNYPDDVVEKFIELSIKNGVDIIRIFDALN DLRNLETSIRATKKFGAEAQATICYTVSNVHTIEYYVELCKQIEKMGADSIAIKDMSGIL TPYVAYDLISQIKKNVDIPLQLHVHETTGIGSLTYLKGIEAGVDVIDTAISPFSGGTSQP STEALHMLVRDAGYESSLDVKVLEKIANHFVKVKEKYIADGTLPVKMLSTDPKGLIYQVP GGMLSNLYSQLTQLKQVEKYEQVLAEVPRVRADLGFPPLVTPMSQMVGTQAAFNVIIGQR YKMVPTEIKDYLRGLYGRSPVEIDDEFRKSIIGDKEIITGRPADYLENGLEKARDEIGYL AKCDEDVLTYALFPEVGKKFLENKYENKIVSCIS >gi|289656164|gb|ADCS01000026.1| GENE 47 39514 - 39669 146 51 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIKKFIYKTASKAIKNKIKNMDNKNKRKLNPKHIARIIFLASRISQRNKNK >gi|289656164|gb|ADCS01000026.1| GENE 48 39673 - 42522 2856 949 aa, chain - ## HITS:1 COG:all2981 KEGG:ns NR:ns ## COG: all2981 COG0744 # Protein_GI_number: 17230473 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase (penicillin-binding protein) # Organism: Nostoc sp. PCC 7120 # 17 346 33 323 640 176 32.0 3e-43 MEKFKSLDKKNKLKLLLYSILILISFFVTLISVTILDILNDVPKMDLNNLSNSFNQTSSI YDENGKLLEKIESLEYRTIVPIEKVPKHIKDAFISIEDERFYKHIGIDFQGIASAFIDNI KAGKIVRGGSTITQQLVKNVYLSNVKTINRKVQEAYLAIGVDKKLLKDEILEAYLNRINL GQGSYGVEAAAQTYFSKDVWDLNLSQSALIAGITKSPVEYPPFKRIPKDSYKDGELIGTM DINGEQMYLVLNPKAFERQKTVLKKMYSLGCITETEYNDALKFDIVSSLNPGIKKYHSMS SYSTDYIKSEAAKLLSKYYSVSQDEAEHKLFTGGYSIYSSIDENIQHDLENIYVNFKDYL NSNTNSNHGAKALSFTLDGTDNILDANGNIVYFQRYNFFDEEFNFKIDKENYNINSKGDL SITNSLFNTASNKLDIIDIYEINSDENLQTYNIGFLNIPRDVYEEKADYIIISSGFLKNK SDFYKIDANNNLIISKEYYSYESIPTLQPQSSAIILDNESGYVKAIVGGLDVNSKNLKIY NRATNSVRSPGSLIKPVVYLTALENGYTLGSVKDDVPIYIDGNMWPSNDYPGFGGLLTLR LALENNSNVIPVEFLQEMGLDKMKDTLKKFGIINSANASKDNFISLSENKYKSDENLDSL ALGNMQRGITNIDAAQIYRTIATGGDTKDVSSVIKIEDANGTTIINNSTKKTEKSFDSTN CYLLTDALRTNVTRGIAKGAGTLKLDIAGEIGLNKFNSDLWFTGYSPKYTISTWIGCDSP KIELDADSKLILNLFKQISQDVNQNLPTTKFVKPDNIVEKYICQKSGNLGTKLCEEVDAG YIEKYKSGTEPTKYCDQHIKLLICNKSNRLASEYCPKEDVEYKIFFERQPAYIASERGGI YPDDYEYVPKLYCNYHDEDWYNKNKEKKKTKKQQKTTKDKSSKSSSKKG >gi|289656164|gb|ADCS01000026.1| GENE 49 42638 - 43939 1255 433 aa, chain + ## HITS:1 COG:CAC2299 KEGG:ns NR:ns ## COG: CAC2299 COG2262 # Protein_GI_number: 15895566 # Func_class: R General function prediction only # Function: GTPases # Organism: Clostridium acetobutylicum # 8 430 177 593 593 286 43.0 4e-77 MENIKDKEKERVIIVGTDIGAYPNSLETSIRELEELVKADGAEVVGVVTQNIDKFSPKYL VGSGKVNEINDMIPKLEANAVVFNDELSGVQLRNLEDAFNKGCDFFNKKVKVLDRTNLIL DIFALRASTYEGKLQVQLAQLNYQLPRLIGIQGWSRTGGGIGTRGPGEQIIETDRRRLLR EIETIKAKLKKSEKTRDTMRSKRLENRISTVSLVGYTNAGKSTILNRLKVSDSKDVYVED MLFATLDPNSRRAKLPNGIEFILSDTVGFVSKLPTKLIEAFKSTLEEIKYSDLILHVIDA SSDDLEIQYETTMNILKDLKIDGDKVITVFNKMDKLEGSDILINPKYTDKRLYISAKFDD DMDKLLKFIEENLPEKFKHVKMLIDYKNSVVLSEILDNHKCEELEYLNEGVSFKVILTIE EYNKYKKFVVDYV >gi|289656164|gb|ADCS01000026.1| GENE 50 43932 - 44567 828 211 aa, chain + ## HITS:1 COG:lin2660 KEGG:ns NR:ns ## COG: lin2660 COG1739 # Protein_GI_number: 16801721 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 2 201 5 204 211 163 46.0 2e-40 MYKTFYRDGTDEFIEKKSKFIGYGFRVKSEEEAVKKIEEIKKIHRDATHNCSAYIIGENK LIQRYNDDGEPSGTAGIPMLEVLKKEDVTNVLVMVTRYFGGILLGAGGLVRAYTKGAKIA VDSSLVVEMREYEKLSLKYDYTFHGGITNYLIKNGYKVLNEDYTDKVKIILHRDLNDNKI IEDLINETSAAIEIKKLGIEKLPFNDGKILY >gi|289656164|gb|ADCS01000026.1| GENE 51 44578 - 45285 970 235 aa, chain + ## HITS:1 COG:MYPU_6230 KEGG:ns NR:ns ## COG: MYPU_6230 COG0171 # Protein_GI_number: 15829094 # Func_class: H Coenzyme transport and metabolism # Function: NAD synthase # Organism: Mycoplasma pulmonis # 8 232 21 245 257 207 47.0 1e-53 MKREVEKLVLWLRENVEKAGAKGLIFGMSGGIDSAVIAAVSKLAFPDTSLGIIMPCESAY EDEEDARLIAEVLDLKIQKVDLTDTYKTYLESSFFSSNRMARSNIKPRLRMLTLYYYAQD LGYLVCGSSNASEFYIGYYTKFGDSGADLLPLVGFLKDEVFDLARELGIPEKIIDKKPSA GLWENQTDEDEMGFSYGELNAHIRGEKIDSEIADRIEKMHKNSEHKRAFAVKYEK >gi|289656164|gb|ADCS01000026.1| GENE 52 45335 - 45751 560 138 aa, chain - ## HITS:1 COG:FN1079 KEGG:ns NR:ns ## COG: FN1079 COG0783 # Protein_GI_number: 19704414 # Func_class: P Inorganic ion transport and metabolism # Function: DNA-binding ferritin-like protein (oxidative damage protectant) # Organism: Fusobacterium nucleatum # 2 138 5 144 144 112 46.0 2e-25 MKNLDKYLANLAVGNIKLHNLHWNVTGFTFKAVHEYLEALYDDFFEKYDAIAEYQKMNGV YPKASLKEYLEISDINELESKDIDAKSAVEEALKLLKHMRELAEVISDESDDFVLSNMME DHITGYNKQIWFMESMLK >gi|289656164|gb|ADCS01000026.1| GENE 53 46176 - 47153 1144 325 aa, chain + ## HITS:1 COG:SP1069 KEGG:ns NR:ns ## COG: SP1069 COG2984 # Protein_GI_number: 15900938 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, periplasmic component # Organism: Streptococcus pneumoniae TIGR4 # 23 325 37 344 344 156 31.0 5e-38 MKKIVVLLLISLLLIGCNGKNSSKGIEKETSDSKKYTIGIIKYVDHISLDAAENGFIEEL KKNDVDVEIIEKSANGDMSLTTTLAQEMLSKKVDLIYAIATPAAQATKNVVRDIPVVFSA VTDPVGAGIVNSIESPDANITGVSDYVDPKMQIEEFLKIYPNIKTFGVIYNTSEQNSQVQ VEKLESALKEKNIFLVKVGINTVNDIPASIAFMSNNIDALFAITDNTVASAVPILSEQLL KNNIPSLSSEEGQVKNGLLMSEGINYESHGAQAARIAIRILSGEDIKNIPVEYNEINHKV VNEKTAKTLKLDLNNEIFKDAQIIK >gi|289656164|gb|ADCS01000026.1| GENE 54 47164 - 48054 1070 296 aa, chain + ## HITS:1 COG:FN2080 KEGG:ns NR:ns ## COG: FN2080 COG4120 # Protein_GI_number: 19705370 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Fusobacterium nucleatum # 8 275 1 266 278 203 48.0 4e-52 MLLGLNSVLLASIEVGLIFAILSMGVVFTFKILDIADLSVEGTFPLGAFIFAKMITSGLG VYTSMTFSFIFGLIAGLVTFLLYKKLKIAPILAGILTMTILYSVNLRIMGKSNVALFDFD NLFVKFEKIPKGLILFAIVLIIKIIIDNFLKTERGYMLVITGDNESLVKSLGKNPDLYTM IGLMISNGLVSLSGALMSQYQGFSDSQMGATIIVTALASIIIGDTFLKNSRKIKITTRAI SGAIIYRIISGLAIHVGLDSSDLKMVTAFIVILFITYNNVSAGRIKRIKKSVNNER >gi|289656164|gb|ADCS01000026.1| GENE 55 48058 - 48831 210 257 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 228 1 218 245 85 25 1e-15 MLKIKNLNKTFYLGMPEESRIFENFSVEAEKNKCTAILGANGCGKSTLFNIISGSVKSDS GTIRLNDLELEKMSEQKRALHIGKVNQDPSKGVSPSLSILENMSIALKKGDRLSFKRLLK NTNIDLIVKKLRELDLGLEDKLNTQVKYLSGGQRQSLSLLMATIKKPDLLLLDEHTAALD PKTSKIVMDKTADLIYREKITTLMITHNLNHAIKYSSRIIMLNKGKIVLDIKSSEITEEQ LNRLYNENIERELKTTV >gi|289656164|gb|ADCS01000026.1| GENE 56 48940 - 49164 368 74 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299143859|ref|ZP_07036939.1| ## NR: gi|299143859|ref|ZP_07036939.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 74 1 74 74 107 100.0 3e-22 MAYTEKAFGAKLKIDFNGGKSANGKDLVKSKTFKNLNTEAAIENIADVADKLAGLVKFEK TAVKKIVEIEIVEG >gi|289656164|gb|ADCS01000026.1| GENE 57 49186 - 49407 383 73 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299143860|ref|ZP_07036940.1| ## NR: gi|299143860|ref|ZP_07036940.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 73 1 73 73 114 100.0 3e-24 MAVKKTLEIGFSDTKGKILKFSIDDVRDNITKSDLTSIEHAIIDSKVFKGTEGDLLKLEN AHYRELTTTDLLK >gi|289656164|gb|ADCS01000026.1| GENE 58 49433 - 49585 276 50 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299143861|ref|ZP_07036941.1| ## NR: gi|299143861|ref|ZP_07036941.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 50 1 50 50 75 100.0 1e-12 MGIDELISQIANTGFPIVVSCYLLIRIETKMSELTNSINELSNSIENLIK >gi|289656164|gb|ADCS01000026.1| GENE 59 50125 - 51939 2231 604 aa, chain + ## HITS:1 COG:BS_oppA KEGG:ns NR:ns ## COG: BS_oppA COG4166 # Protein_GI_number: 16078208 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Bacillus subtilis # 3 590 2 532 545 385 37.0 1e-106 MKKKLTSLICLLVVFSFLLTACGKGNTAGGDNGAAEEGQILYTVNHSEPGSLDPALAQGT HESWILNHLYTGLLSYDKEGKLVDGMAEMPTISEDGLTYTFKIKDGMKWSNGDPVTAEDF AYEWLRVLDPETASEYAYQLYYVKGGEAYNTVEKPGVYYVKDNDGKDTDIVDHEVKFTDA DTQGLDVAGKSDDEVAQMVYEKWLEEKKAEVGVKVLDEKTLEVVLENPTPYFADLTAFYT LYPVNSKIVKENPDWAKSGGELYTSNGAFTLKTWEHDSIIELVKNENWFKADDVKLAGIT FDILEDINTCWQNYDSGKYSMLVDPPQEVVAQKFEEKNEELVIGKQVGTYYYNLNNIKEA PGAKVNPFTNVNIRKAFVYALDRESLVNNITKGGQIAATGFVPYGLLDDQGKDFREENGV LVEYNPEKAKEFLQKGLDELGLKVEDLDETVILYNTSESHKKIAQAVQQMWKETLGVELG LENVDFNVKIAREHAHDFEISRAGWVGDYSDPMTMLDLFIKGGAMNDSGHDNPEYDALIN EARQSADQKVRMDAMKKAEKVLMEDMPIVPIYFYTQPYFVKSNVKGIYKPILQYPVLTFA EIGE >gi|289656164|gb|ADCS01000026.1| GENE 60 51996 - 52922 1223 308 aa, chain + ## HITS:1 COG:BS_oppB KEGG:ns NR:ns ## COG: BS_oppB COG0601 # Protein_GI_number: 16078209 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Bacillus subtilis # 1 304 1 305 311 298 55.0 7e-81 MLKYISKRIGMSIFTIFFIITLTFFLMHAVPGNPLQREGKMPASVYKNLEIKYGLDKPIS QQYLIYIKNVLKFDFGDSMKSKTETVNQMISRGFPVSARLGFQALILALIVGPLLGSLAA LYQNKAPDYIAMIFAIIGISVPSFIMGTLLIQYIAKGGLLPVSGWGTFKHSILPSIALSL MPTAQIARLMRSSMLEVLGQDYMKTAKSKGISKAAVLIKHGVRNSILPIVSVLGTITADL LMGSFVIEKIFGIPGLGRFFVNSITNRDYTLIMGTTVFYGMVLVTMILLVDIAYVLIDPR IKLAGGDN >gi|289656164|gb|ADCS01000026.1| GENE 61 52922 - 53881 1174 319 aa, chain + ## HITS:1 COG:BS_dppC KEGG:ns NR:ns ## COG: BS_dppC COG1173 # Protein_GI_number: 16078359 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Bacillus subtilis # 26 319 32 320 320 287 48.0 1e-77 MTSKIVENTFTPSPEMFEKVDRSLLDAERIKRPTIKYWADVWRRLKNNKLAMAGLILIIL MVIFSIVGPMISGTTYEKINMSKMNVKPNSQYWFGTDSLGRDLFTRVTYGARYSLLIGFL AAFVNITIGVLYGGVAGMNSGKVDAIMMRIAEIIYSVPYLLVVILLSVVFSKKGSGTSLS VMILAMSISGWIPTAILVRGQVLSLKESEYVMAARSMGATSNWILFKHILPNTLGPILVN LTLIIPRAIFSEATLSFVSLGLQDPLPSLGNLANSGLEVLAIGLGYQILLPALMISLIMF GFNVLGDGLRDALDPRLRK >gi|289656164|gb|ADCS01000026.1| GENE 62 53890 - 54897 953 335 aa, chain + ## HITS:1 COG:BS_oppD KEGG:ns NR:ns ## COG: BS_oppD COG0444 # Protein_GI_number: 16078211 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component # Organism: Bacillus subtilis # 4 326 7 329 358 392 60.0 1e-109 MENILEVKNLQVSFKTFFGEVEAVRGISFNVPKSKTVAIVGESGCGKSVTANSIMKLLPD PPAFYKGGSILFEGEEIITKTEKEMEELRGKKISMVFQDPMTSLNPTMKVGTQIMEGLLK HEKISKADAKKRAIEILEMVSVPEAEKRINQYPHEFSGGMRQRVMLAIAMVMNPILMIAD EPTTALDVTVQAQILDLMKKLQDEFGMSIILITHDLGVVADMSNKVEVMYAGQIMEEGLT EDIFYNTKHPYTKKLLASVPRLDMNKKDKLHAIHGTPPDLYIPPKGCPFYDRCDEAMKIC DEHMPPVTEHGNGHFCRCWLYHEMCPTQNKEGYND >gi|289656164|gb|ADCS01000026.1| GENE 63 54890 - 55846 711 318 aa, chain + ## HITS:1 COG:CAC3628 KEGG:ns NR:ns ## COG: CAC3628 COG4608 # Protein_GI_number: 15896862 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, ATPase component # Organism: Clostridium acetobutylicum # 2 316 7 321 322 422 64.0 1e-118 MTEPLISARGIKKYFKVKDGILKAVDNVSFDIYPGETFGLVGESGCGKSTTGRTILRLYN PTAGEMYFDGQDIFKLSAREMQKRRKDFQFIFQDPYASLNPRMTVESIVEEPLLINQTYK SDSERRTRVIELLRLVGLSEEHASRFPHEFSGGQRQRVGIARALALNPKFIVCDEPISAL DVSIQAQVVNLLIELQEKMNLTYLFIAHDLSMVRYISDRVGVMYLGNMMEVASSDELYDN PLHPYTVALLSAIPIADPNIQRERKRIVLEGEVPSPINPKENCPFAERCPRATEQCFKEK PEFKEVKPNHFVACHLVK >gi|289656164|gb|ADCS01000026.1| GENE 64 56078 - 56773 761 231 aa, chain + ## HITS:1 COG:PM1506 KEGG:ns NR:ns ## COG: PM1506 COG0588 # Protein_GI_number: 15603371 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoglycerate mutase 1 # Organism: Pasteurella multocida # 1 227 1 227 227 292 61.0 4e-79 MKLVLVRHGQSEWNLANLFTGWTDVDLSENGVNEAKSAGRLIKVEGIDFDIAYTSVLKRA IKTCQYILEESDQLWIPMEKSWRLNERHYGALQGLNKAETIQKYGDEQVHIWRRSYNVSP PEMEVEQAKAFLSDRRYKMLDEKLIPITENLELTLKRVMPFYEDHIAPNLRQGKNVLVAA HGNSLRALCKYLENISDEAIPKLEIATGQPIIYELSDKLEVINKKILTEDV >gi|289656164|gb|ADCS01000026.1| GENE 65 57008 - 57595 578 195 aa, chain - ## HITS:1 COG:TP0100 KEGG:ns NR:ns ## COG: TP0100 COG0526 # Protein_GI_number: 15639094 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Treponema pallidum # 55 178 68 182 200 67 33.0 1e-11 MKKMNKKIFGIGVLSVMLLVSGCSNKTTNSSKTENSNKVEMNSQYEELGFSNFQFKGHTL TGDDISSDIFKDSKVTMINFWGTFCGPCKMELPHLAELSNEYSKEEFQILGVIADTSDGE DFNIKDAKEIVEKSNVTFPNLLNSKELSDKYLNNVQGLPTTIFVDKDGNLIGDVLVGARD KNTWKEIIDKVISEN >gi|289656164|gb|ADCS01000026.1| GENE 66 57703 - 58950 1033 415 aa, chain + ## HITS:1 COG:CAC2536 KEGG:ns NR:ns ## COG: CAC2536 COG0438 # Protein_GI_number: 15895799 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Clostridium acetobutylicum # 1 379 1 380 393 324 45.0 3e-88 MKVLITTDLYKSQINGVVTSVLNLYTELKELGVDVRILTLSKTMKSYNEGDVYFISSFPV NIYPDIRASIAVKDRYLKELINWAPDIIHTQCEFSTLIFAKIIAKKVKCPIVHTYHTMYE SCVGYIFKNERMGKKLISKVMKQLLKKCDHIIAPTKKVKKNLERYKIKNDISIIPTGIDL FRFETDFSKEEILELKSDINIPEDDFVILFLGRIAKEKNIDELIRYYNNLSSKRSNISFL IVGGGPYLEILSNKVNTLKNKKIFFTGMVDPSEVYKYYKLADVFVCASKSETQGLTFVEA AANSLPLVCEYDSCLDGLLINGKDGYFFNNGQDFEKSILKLADDENLRREFALNAKEISK KYSKEYFAKSVYDLYEEVISNYRYIPTVKRRVYKVKKATKRQFRKLKGIVNRYIK >gi|289656164|gb|ADCS01000026.1| GENE 67 59101 - 59631 498 176 aa, chain + ## HITS:1 COG:PH1225 KEGG:ns NR:ns ## COG: PH1225 COG2020 # Protein_GI_number: 14591044 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Putative protein-S-isoprenylcysteine methyltransferase # Organism: Pyrococcus horikoshii # 65 171 55 158 173 61 31.0 8e-10 MIDIFKITEGDNLKKDREKHLPVIGVGPIYVLIILFVTVVGILLSKFNYIKVISFGFFKI PNLILGIFMIFIGIFIWIKAVIVEKIDDGIKNNKLVTTGIYACVRNPIYSAFMIAFTGIL LTVNNALLLVLPVAYWLFLTIFMKHTEEKWLKDLYGEEYENYCKKVNRCIPWFPQK >gi|289656164|gb|ADCS01000026.1| GENE 68 59788 - 61014 852 408 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 [Phaeobacter gallaeciensis BS107] # 7 407 12 416 418 332 41 4e-90 MKNVYDILEERGFIDQATYPEELKELLSKESVPFYIGFDATADSLTLGHFLQVRVMQHMQ LAGHKPIALLGGGTTMIGDPSGKTDMRKIMTKETIEYNAGRFKEQLSHFLDFSDDKAIFV NNADWLLNLNFLDFMREIGVHFSVNRMLTFDCYKNRMEKGLTFFEFAYMLMQSYDFLVLY RKYGCKLELGGSDQWSNMLGGYELVRKLEDDKVYSMTFKLLTTAAGIKMGKTEKGAVWLD ASKTSPYEMYQYMRNSDDRDVIKFMKLLTMLPMEEIAKYESLEGAELNTAKEVLAYEIVK DVHGEEEAKKAMDAAKSLFSGGINSENIPSTEISSSEFENGKNIVELLKELNLIKSNSEG RRLIEQNGITIDDEKVKTFDQMLSLSDFKDGKILIRKGKKVYHQVKLI >gi|289656164|gb|ADCS01000026.1| GENE 69 61330 - 62484 400 384 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225093729|ref|YP_002662469.1| ribosomal protein S15 [gamma proteobacterium HTCC5015] # 115 381 229 495 497 158 33 9e-38 MVGIDIVKISRVEKIYLKYDEKFLNRIFNDEEISYIKYKNNRVQSIAGLFAAKEAVSKAV GTGIGSTSFKDIKIYYENSSPYAICRGYIYKLSISHDGGFAVAVAIKDKVAIDDEFKGIL NNRNSNTHKGDYGRVAIVAGSMGMTGSAFLASNAALRCGSGLVYNIVPRDILEIMSIKYV EPIVKSFNKNSDMLDFLNNMDSILIGPGIGLDDTSEKKVKDVLSLDKNIVVDADGLTHLA KNLNVLENRREFSTVLTPHVGEFSRLTGISHDEINKNREKLAMEFAKRYKVILLLKGNRT VVTNGKDIYINKTGNPSMATAGSGDVLSGILVSLVGRKIELFKASSMATNIHGAAGDLAR DALSEESVIASDIILFLSKVLVNY >gi|289656164|gb|ADCS01000026.1| GENE 70 62549 - 62893 393 114 aa, chain + ## HITS:1 COG:BS_ydcE KEGG:ns NR:ns ## COG: BS_ydcE COG2337 # Protein_GI_number: 16077533 # Func_class: T Signal transduction mechanisms # Function: Growth inhibitor # Organism: Bacillus subtilis # 1 114 1 114 116 147 60.0 5e-36 MLIKRGDIFYADLSPVIGSEQGGVRPVVIIQNDIGNKYSPTLIVAAITSQLNKAKLPTHI NVDAKGVPLPKNSVILLEQIRTIDKKRLRERIGRFEGNIMSEIDKAIKVSLSIV >gi|289656164|gb|ADCS01000026.1| GENE 71 63003 - 65084 2193 693 aa, chain + ## HITS:1 COG:no KEGG:Clos_2271 NR:ns ## KEGG: Clos_2271 # Name: not_defined # Def: hypothetical protein # Organism: A.oremlandii # Pathway: not_defined # 26 686 28 707 720 253 29.0 1e-65 MFNKKNIWILLILISIVSSFYFVSGRLKAESNYKNYDILADYDEFSKIGYDYFNTSREYF TALAKNGVSNVTINESTINSMKKMQGSKIKTGLVGNDLIVKGSEEDLKFIANGLKALKKE EQRKIKFIDNNTMQIQGSPKDIVNYKSDAYDVFQNRIGDDGIRGSVLEYIGLGFNTRKIE DVKGIENLSINLRPTFYSRYQDSRACMNRFTEAVEKYNKSQRYVVFSGKEFYKNSEEDPK VQDDFASWLSKNKIALGMIEASNQRGHLAIDGIDSVIRRDSIGKIRVFTTWDYIQREYDY AIPMHHNGEELTNVYYRAISERNIVAIFIRPFIKNDLVISDPEKYGAVLENLQDRLDNKG YEVGNVNPIGSWNPNRTIGMLPIAIGTVAASILLLKLVFSISSIAAIVIFVIGTLLSVVF FVLGKMQSTGTVLFNLAAIVTYPSLAICTILENYNRIARSRRKAGIVKIFIHGSAVLLIS ILISMIGSFMEVSFMSGTNYLVELNIFRGVKISQLLPLLVSIFIYAAYIGFGREKETDVK IRPYEITNMLSKNVKLWEAVLGIMVLGMLAVFIVRGGNSNTKVPGMELLFRNLLEQYLPA RPRTKAIFIGYPAVILLMYIAYKKRGKLLTILLTIFAAIGMADIVNTFSHIRTPLTISFM RVAIEFVTALIVSIFVLIAAELVRKGYDKYIEK >gi|289656164|gb|ADCS01000026.1| GENE 72 65074 - 66174 999 366 aa, chain + ## HITS:1 COG:alr4509 KEGG:ns NR:ns ## COG: alr4509 COG2327 # Protein_GI_number: 17232001 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Nostoc sp. PCC 7120 # 4 308 2 290 349 138 30.0 2e-32 MRNKILVSGYYGYNNIGDEAILKGLVDGISLHSDAEIVVLSKNPDWTEKKYNVKSVNRSN LFEIISAVRNCDMVLSGGGSLMQDITSKKSILYYLAILKLGMLFKKKTFVYSQGIGPINL KRNKYLARNILSKVDFLNVRDKASARELRELGVNRDILVTTDTVFGINKPNLDFGRDILK KLNVREDKKNICFTIMNWKNYGDRTISEIVSTIEKIVQEKDVNIIFVPFFYHLDLEIERK IYNLLKEKYENIYLVEEYLHVKEYLSLIGTMDIMVSMRLHGLIFATLMGVYPIGISYDPK IDGFMKELERIQRFYVGDFCSEKLSEEVLNSIDNLDELKKETREHLKKFYNLTDKHNEAV KFVLER >gi|289656164|gb|ADCS01000026.1| GENE 73 66178 - 66933 973 251 aa, chain + ## HITS:1 COG:lin2665 KEGG:ns NR:ns ## COG: lin2665 COG1922 # Protein_GI_number: 16801726 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Teichoic acid biosynthesis proteins # Organism: Listeria innocua # 3 251 5 241 244 169 37.0 7e-42 MDKVSIFGVNVFNINFKEAIDIVKEFLKEDKIHTIVTPNTEIVVDARDNAKLRDILNSAD LSIADGIGLIYGSKMRGKPLKERVTGFDVSMELLNIAEEEGYSVYLLGTKPEVVEKAYEN LKSTRPELNVIGYHHGYFKGTHFGMAGHDEEIEVIDEINRLKPDIIFLGLGYPKQELWIE ENAKKLNSKLIIGNGGVIDIIAGEVKRAPDIFIKLNLEWFYRLISDPSRIKRQVAIPKFL ISVMLDKNAVK >gi|289656164|gb|ADCS01000026.1| GENE 74 66945 - 68894 2410 649 aa, chain + ## HITS:1 COG:BH2352 KEGG:ns NR:ns ## COG: BH2352 COG0021 # Protein_GI_number: 15614915 # Func_class: G Carbohydrate transport and metabolism # Function: Transketolase # Organism: Bacillus halodurans # 2 642 4 655 666 689 54.0 0 MNIEQKSVNAIRMLSIDQIQRANSGHPGLPLGAAPAAYMLWKTMKHNPKDPNWINRDRFI LSAGHGSSMLYSLLHLFGYGLKLEDLKNFRQLGSKTPGHPEYGHTVGVEATTGPLGQGIS MAVGMAMAEKHLAAIYNRDIEIINHNTFVICGDGDLMEGISNEASSLAGTLELGKLIVLY DSNKITIEGSTDLAFRENVSMRYKALGWQTLLVEDGNNLSEIKEAIEEAKREKTRPTLIE IKTQIGYGSPRVGLSKAHGEPLGVDGVLETKKFFEYPEEEFYVEDEVRLHYEDINKDLVF EYEKEKRVEKLYAEKYPKEYKELVDSFNGKFNLDFLETEEYLKFEKDMATRASSGEALNR IAKEFNLLFGGSADLGPSNKSMMNNSDNFSSTNPKGNNINFGIREHAMGAVVNGIMLHGG LRGYGATFLVFSDYMKPAIRLSALQNLPATYILTHDSIGVGEDGPTHQPIEHLAMLRSIP NNIVFRPADAVEAAVGWSVAMKSKMTPVCLILSRQTLKNLEKSSIDAANGAYIVKAEEDE LEKIIIATGSEVSLAIDAAKDKKNVRVVSMPSVELFEAQSIEYRENIIPSSCEKRLVVEA ASSFGWYKYAGTNGKILSIDGFGASGEGSKVFEHFGITTENIKKVIEEL >gi|289656164|gb|ADCS01000026.1| GENE 75 68957 - 70093 930 378 aa, chain - ## HITS:1 COG:CAC2436 KEGG:ns NR:ns ## COG: CAC2436 COG5438 # Protein_GI_number: 15895701 # Func_class: S Function unknown # Function: Predicted multitransmembrane protein # Organism: Clostridium acetobutylicum # 68 378 76 387 400 209 42.0 7e-54 MKLKSLFLLILLTIVFIFPSYSFANSFNAMENINVTQSFEDARYEKAIIISVDDKEEPDE YGNIAQNIKVKLLSGNDKGKFINVINYMSTYLNTNLDLKVNQKVLISIDKDMDGNDVYSV SDYLRTDYIYILMGVFILILLFVGRKKGLLTIVSLIITLVIIFFVSIPLIIKGHSPILIA VISSFIISFISLLIVGGFNLKTISAILGTSFGAILAGVIAFLVGTKIHLTGLSLDETQML LYLPDDLVLDPGELLFAGIIWGSIGAVMDVGMSVSSSIQEISRANESFGFKELFKSGMNV GRDIMATMSNTLILAYMGSALPLILLVIIYQENNFKILNLDVIATEIVRSLSGSIGLILS IPITALIAAFLIEKNSNK >gi|289656164|gb|ADCS01000026.1| GENE 76 70218 - 71735 2117 505 aa, chain + ## HITS:1 COG:CAC2700_2 KEGG:ns NR:ns ## COG: CAC2700_2 COG0519 # Protein_GI_number: 15895957 # Func_class: F Nucleotide transport and metabolism # Function: GMP synthase, PP-ATPase domain/subunit # Organism: Clostridium acetobutylicum # 190 505 1 316 316 443 68.0 1e-124 MILVVDFGGQYNQLIARRVRNLNVYCEVVPYNKALKSIDEKKPQGIIFTGGPNSVYEEKA PQIEKEIFERNIPILGLCYGMQIMAHTLGGEVKPAKQREFGKTILNIKDSLIFNGIPNEN YVWMSHVDRVEKLPEGFETIANTDNCPIAAMQNREKKLYALQFHPEVNHSQFGNEMLKNF ITEVCKVEQNWNMSNYAKMAIEEVKNKVGDGKVLLALSGGVDSSVTAALLSKAVGSKLTC IFVDHGLMRKNEGDEVEAAFKNSGMNFIRVDAEDRFLNKLKGVTDPEAKRKAIGEEFIRV FEDEGRKIKSVDFLAQGTIYPDIIESGLGDAAVIKSHHNVGGLPEVVDFKDLVEPLKMLF KDEVRNLGRELGLPDYLVDRQPFPGPGLGIRVIGEVTKDKLDILRDADYIFREELEKAGL GKEINQYFAVLTNNRTVGVMGDFRTYDYTLALRAVKTTDFMTADWARIPYEILDKVSNRI VNEVNNINRIVYDITSKPPATIEWE >gi|289656164|gb|ADCS01000026.1| GENE 77 72240 - 72524 289 94 aa, chain + ## HITS:1 COG:no KEGG:SZO_12760 NR:ns ## KEGG: SZO_12760 # Name: not_defined # Def: hypothetical protein # Organism: S.equi_zooepidemicus # Pathway: not_defined # 1 92 1 92 116 102 63.0 4e-21 MEDGKRNIRLRFDLTDKEGELFEKKKEECGAKSMSHFIRKTVLEKEIYEVDLEPLRDLYG TLSIVTNNLNQIAKRVNRTGVIYKNDIDDMKKSY >gi|289656164|gb|ADCS01000026.1| GENE 78 72762 - 72980 192 72 aa, chain + ## HITS:1 COG:no KEGG:Smon_0656 NR:ns ## KEGG: Smon_0656 # Name: not_defined # Def: transcriptional regulator, XRE family # Organism: S.moniliformis # Pathway: not_defined # 1 72 1 72 72 110 83.0 2e-23 MKFNYNGLWKVLIDKNMKKKDLVDRTGVSPTTISKMVRGEAVSLSVIGKICEELGTDIGD LICIEKNSLEDK >gi|289656164|gb|ADCS01000026.1| GENE 79 72981 - 74963 1502 660 aa, chain + ## HITS:1 COG:MYPU_3980 KEGG:ns NR:ns ## COG: MYPU_3980 COG2189 # Protein_GI_number: 15828869 # Func_class: L Replication, recombination and repair # Function: Adenine specific DNA methylase Mod # Organism: Mycoplasma pulmonis # 36 660 1 650 652 576 53.0 1e-164 MNKNIFEIVVEVLKTNSKYISDDGKLLKAIVYSDVMTMDKELLSLLLSNEKIKESFFEDI NGTLVFDKQKFAWFIESKEFLPDSYTRYTNKIGLTNGGDFISKSNDVVLDFPYKDCVLEG GQDKEDQKRKEIFYNETIASDEISKMLAPKVFTNAKRYTKDGIEENITFDEKDNLIIKGN NLIALSSLLKRYEGKVKCIYIDPPYYFSVNKDEDTFAYNSNFKLSSWLVFMKNRLEMAKR LLSDDGALFVQISDDGVGELHCLLKDIFGIENFINKITVKTKSPSGFASVNPGVFETAEY ILAFAKNKRNWKYNIQYVESGYDVNYKSVVVNKNDPAEKWIIRNIVDILAEERGYDNAKD MRDNLGKLVVDELVAEYALNNADSVFRYTAIGNNAGQIVVNTRNKSREEVEKIFTVERDG HYTVYVHKGQEIAFYSKKLHEVDGKIVPSMQVSNIWTDTSYEGIANEGGVTLKGGKKPEK LIRRIIEMASDKGDLILDYHLGSGTTCAVAHKIGRKYIGIEQLKYGKDDSTVRLESVIKG DSTGISKAVDWKGGGSFVYCELLENASTLIEKIQAASEETISEIKNEIYIDERIVPYITI EELKNADEEFASLELEEKKKALISLVDKNKLYVNYSDIEDESYAVSESDKAFTKSFYAEV >gi|289656164|gb|ADCS01000026.1| GENE 80 74965 - 77574 1545 869 aa, chain + ## HITS:1 COG:MYPU_3950 KEGG:ns NR:ns ## COG: MYPU_3950 COG3421 # Protein_GI_number: 15828866 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Mycoplasma pulmonis # 1 869 19 890 897 1077 67.0 0 MAEQFLYEKLDVAKEVGMSIDFPEIIKSGLSKKISLREYQIDAFTNFALYFDNDGLRKNK QVHTLFHMATGSGKTVIMAGLILYLYIKGYRKFLFFVNQTNVLEKTIDNFINPLSNKYLF NDVVEYLGKKVKIKRVENFSGNVLDDDIEILFTTTQKLHMDLFEAKENSLTYDDFENNKV VFISDESHHINSLTKKPTKDEEEAAKSWEYSVTNALSRNRDSIMLEFTATCDLKDANVLQ KYKDKIIFNYPLISFRESGYTKDFQNFATDTDLWARTLMALVMSEYRRFLFADLKLNIKP VVMLKSQKIDESKSFYDEFFKKVKELTSYELQNLELVGIEKLTEAINYFKEKDDTLELLE QSIKTAFNEDTSIIMNGSSDNNKENQLLVNSLEDLDNPIRLIFAVDMLNEGWDVLNLFDI VRLYDTRQSKSGGKIGSYTIKEAQLIGRGARYCPFVVDDEELKFKRKFDGDISNPNRILE TMYFHSKNDSRYISELKNALIETGLQAPDPIILEYRLKDEFKDSDFYKKSYVFSNKRLLK GRDEVHSLEPSMRTKTYYYTALSGKGNIVNLVGDDTPSTSTIKTNLKSVKFKDIDYNILL GAIECFEELRFDILKEKYPSLKSMREFLTSDEYLGNSNVEITYSQDEVNGKILFSALKHA LVKIESHVMAIKSEYVGSKEFEPKQLKVVLKDKKISLGSVEGNGGKGNSQNNCSNEEYRL DLTNESWYVFNDNYGTSEEKLFVKYFKTHIEPKLKEKNLEYYVVRNERIPELAIYSFEAG ERFEPDFLLFVRKQRSEGSLIYQGYVEPKGNQLLDNDAWKEEFSMQIEKEHSVSGLFAND YKIIGFPFFNNDNRMEEFEKAINTWMETV >gi|289656164|gb|ADCS01000026.1| GENE 81 77578 - 79218 992 546 aa, chain + ## HITS:1 COG:no KEGG:MSC_0676 NR:ns ## KEGG: MSC_0676 # Name: not_defined # Def: hypothetical protein # Organism: M.mycoides # Pathway: not_defined # 19 448 14 427 872 294 42.0 5e-78 MENEKNKFNALTSEVLNENKQIYTEALDYALGNSDIKNIAITGIYGAGKSTVWKTYEKER KLKNIITVSLGKYKDDISLDNEDELEEKSKDNNRKVVEISSPNTDKNENNRIERQIINQI LSQVEPKNIPLSKYAFKKNKDVISILENILPIISFMLSIGIWMSKDVLSPALILYPIGIG KITIISTVLILYPIMYWSYKFFNSNRLHLSKINVKGAEANFNELDYGDETILERDMKEIV YLLDCSGTEIVVFEDLDRYDNVEIFTKLRELNFLLNSFLSMQDSKIKKNIRFVYMLRDGL FLSKNRTKFFDFIVPVVPVIDSKNSENKLNEAIKVATNVPDKKVIAKISLYIDDMRLLKN IVNEYLVYENIIAIQELELDANKLLALIVLKNIFPREFDLLQEDKGYIHSIFENSEKYKI KAKSELNDRLKDVSDELNFLNGRDKNSKFEAMASMVSPNVCRYEYDNSSSWAEFLKDKSL NPDCSFRISYLYTGNNSTWDDFNYKTFIEKFVLTTQERKDVVDRLPENRQSRIQELLQEK NSLENR >gi|289656164|gb|ADCS01000026.1| GENE 82 79215 - 81338 1479 707 aa, chain + ## HITS:1 COG:no KEGG:MCCL_0236 NR:ns ## KEGG: MCCL_0236 # Name: not_defined # Def: hypothetical protein # Organism: M.caseolyticus # Pathway: not_defined # 32 686 544 1196 1210 141 22.0 8e-32 MREISLYSVKDQLKILKASEVNQVFTETEDIITQNHYFPLIRFLVMQGLIDETYWHYKGC FYQGSLGKNDTIFIKNLLESKEQDVFLDLENPMEVKNRLDMEDFHRFNILNKKLLESCII SSSEDELIAIIASVRENDNYESLMPILDAYEYETIKKFVSIIMGTNEEKLVEILEESMIK NSITFGNLLMSICTHIYTNIDTLKLFSSYIEQNENVVSLISNDEFERFINNISLAEIKFY DIAESEANTERIKEIEKTQAYRLNVKNITYITEKVLGLKSDYGNLLSDIFTSDSLASTKE YLESNFVKFVGQYIDENIMNEAYRNNEHIVVKIMNSNLSKEYKLKYIERNKIIVSDISKI EELKQNIYLIEALIARNKMLFNLDNINNYWKSIDEYDEAFTKYFDQNINDYNYEEILSGN IAISNSFINTSFVSEQVFEYALKCANKQIDNIDETIGKERVMKLINKKLVSLTNENLNVL LNNKFNHEIVKLVNMQLNGQQDQAVAMILGLTTTPALIYELVNSNISDENANKLISVIID DVLIEKIDFEKVSVIEYVMERGLSDVNINYICKNFKSFKLKYEFIKYLDSNNKFSKIREE NLNPDFIQLTLSRPDVSVSSKIDIAVIKIKGNANKDELAEIFSSIDDIAELVDVWNNKRP ALNNFYKEQVGEALINFGYVSRRNDRDCVRIMERKKGNSKKVEDHLL >gi|289656164|gb|ADCS01000026.1| GENE 83 81542 - 81616 61 24 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNKELKGMFLEDVSNSLSNSKMKF >gi|289656164|gb|ADCS01000026.1| GENE 84 81627 - 83561 1442 644 aa, chain + ## HITS:1 COG:no KEGG:EUBELI_20534 NR:ns ## KEGG: EUBELI_20534 # Name: not_defined # Def: hypothetical protein # Organism: E.eligens # Pathway: not_defined # 2 540 3 503 619 93 23.0 3e-17 MINKLLIKNYRSIKKIEINNISNSLGLIGENSSGKSSILSAVLAFLGEYNVKDSDFRFDK DGNREEEIVIGIGLDFDDLEIKRILYDLELNENKPLWYANALENSKGQRTRNKESKSYIN DLRQNIKKEWGFGRNSTSAYFKVIYYREDGSVRNSIHLTTYDFKENEEIKLKEKEIIQIK RIIQPRYAYLHDERNFNEEGLGKTDSTTNKLFNLLLPSMNVKRDLENKTVEETPISELSI PQINQYLLKKIQTEAQKVTAELNRNFKETYNDNVEIEWQFSNRLFENINIKTNFKFSNIN SNIDFQSVGSGTRSMYKIVLLQTLLEMQKDKAEPVLFLLEEPELYLYPKLEKQMSRFICD IARDNQVFVTTHSHMSIVSFKKGSLFKIYRENETKNALPVTRIHRIDSSLEAMKLLGYDI TYLLGKDYLIFVEGKEDQKAYEYLINKIFGAECSSKFMIMTSVSKLQMAVNCSVLKYINT NSKSVYIADSDGGESQDIKNKIVSEIIEHDKELNVDDMNNKIILTNYCMLECYTFEKDLL KNNMTDEEFAIRKIQFINDNKEEINNCLDGRKKKRLDEFEISSLSDNEKFEYVRKYGFTK KLIKKFRGIIGGSGFKKIDQLNKEELEMHCSSLIQDLKNVFNSI >gi|289656164|gb|ADCS01000026.1| GENE 85 83728 - 84339 670 203 aa, chain + ## HITS:1 COG:no KEGG:EUBELI_01741 NR:ns ## KEGG: EUBELI_01741 # Name: not_defined # Def: hypothetical protein # Organism: E.eligens # Pathway: not_defined # 44 194 60 209 215 133 55.0 3e-30 MNKNKLSSIKDIIIGILTLAIIGYIIVWLLGLFIDYVESFVNRLSNMDAVVIVALITGSV SILGVVISSIVSKIIEYRQNIKRYLYEKKEEPYSEFIEMVYKIQENVKENKEHNDKEMLD DIFSFSKKLTLWGSSKVIRKWLAFRKISQEQNDNPTDNLFILEEIIFEIRKDMGQKKSGL KQGDILAFFVNDIKDYLPKDKKK >gi|289656164|gb|ADCS01000026.1| GENE 86 84595 - 85146 737 183 aa, chain + ## HITS:1 COG:no KEGG:Vpar_1793 NR:ns ## KEGG: Vpar_1793 # Name: not_defined # Def: conserved protein/domain typically associated with flavoprotein oxygenase DIM6/NTAB family-like protein # Organism: V.parvula # Pathway: not_defined # 3 180 4 177 178 210 55.0 2e-53 MEFEQKDYKVFEMFNKDWALVTAGNKSDYNSCTVSWGSLGNIWNHVGKNRPIVTVYIHPA RYTGELLKKYDMFTVSFYGKEYKRALVYMGSHSGYNENKVMGAGLTPVAVGEGITYEEAK LTLLCRKLYMHQFTKDDLADEIKEYYAEQPKVYPNVTPDGTEDDWEPHYMIIGEIIETRE FMK >gi|289656164|gb|ADCS01000026.1| GENE 87 85299 - 85454 152 51 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|299143882|ref|ZP_07036962.1| ## NR: gi|299143882|ref|ZP_07036962.1| putative carbamoylphosphate synthase large subunit short form [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 51 1 51 51 78 100.0 1e-13 MEIPNTPAKKALQDWKKNYPDSLKKDYVPFEESNVKFYRKGITAKIPPDIK >gi|289656164|gb|ADCS01000026.1| GENE 88 85770 - 86573 726 267 aa, chain + ## HITS:1 COG:SA0314 KEGG:ns NR:ns ## COG: SA0314 COG2110 # Protein_GI_number: 15926027 # Func_class: R General function prediction only # Function: Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 # Organism: Staphylococcus aureus N315 # 1 267 1 261 266 190 41.0 2e-48 MNKNEMQEQRLNYLLEKFKADSDRYKNMEIPNNISEKRNILRSLMNVRMPKKMSDEVIKV QDEYLSFCAKEKGIVKLSDIPVIRENLSIWQGDITRLEVDAIVNAANSQMLGCFVPMHTC IDNQIHTFAGIQLREECNHQMDKLREKYGRNYEQPTAIPMLTDAYNLPAKKVVHIVGPIV SRVLTEDLEKDLADCYTNTLDMCLENGLKSVAFCCISTGVFHFPNKRAAEIAVKTVEKWL LLHPNSMERIIFNVFKDEDKKYYEELL >gi|289656164|gb|ADCS01000026.1| GENE 89 86527 - 87543 487 338 aa, chain + ## HITS:1 COG:SA0315 KEGG:ns NR:ns ## COG: SA0315 COG0846 # Protein_GI_number: 15926028 # Func_class: K Transcription # Function: NAD-dependent protein deacetylases, SIR2 family # Organism: Staphylococcus aureus N315 # 38 334 9 289 315 177 34.0 4e-44 MYLKMRTRNIMKNYCDKKDGYRETIQNGLIGVRSFSGSISIGKGTKEEQLKILKNEIQNA EAVVVGAGAGLSTSAGMIYSGERFEKYFFDFAKKYGIKDMYSGGFYSFPDSETKWAWWAR NIYFNRYVEPPIPVYRKLLSLLENKNYFVITTNVDHQFQRAGFDKNRLFYTQGDFGLFQS INSKNQKTYDNKNWVIKAMKAQGFVKDQNGVFSVPDDGRISMQIPSSLIPKCPDDNSDVT MNLRADDSFVEDEGWHKASEKYYNFLEKNRNKHVLFLEFGVGSNTPVIIKYPFWQMTMTN EKAIYACINCGEAFCPQEIEGRSICIDGDIGEVLNDIE >gi|289656164|gb|ADCS01000026.1| GENE 90 87734 - 88240 567 168 aa, chain + ## HITS:1 COG:no KEGG:Apre_0714 NR:ns ## KEGG: Apre_0714 # Name: not_defined # Def: hypothetical protein # Organism: A.prevotii # Pathway: not_defined # 1 167 1 167 168 219 72.0 2e-56 MDIIQAILDGIAIAAIFNGAVAALVLINPRFFFDSYPKAVQKAAPEQMTKQEKNINSIIT VIIVGICFIYSITSLLHTGIIGFWNIFWMGYIQWSLLNLGDFLLLDCLLFQGKYKQKIVI PGTEGHKDYEFTNWMKHLAVKEHFLAAPFLLIPIISAIQALLVGFLGR >gi|289656164|gb|ADCS01000026.1| GENE 91 88456 - 88575 122 39 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MHVVNVILLTGNIRNINCVIYEDKYRCSMASCIMNFNIV >gi|289656164|gb|ADCS01000026.1| GENE 92 88830 - 89984 828 384 aa, chain + ## HITS:1 COG:SMa1727 KEGG:ns NR:ns ## COG: SMa1727 COG0596 # Protein_GI_number: 16263403 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Sinorhizobium meliloti # 49 165 38 154 296 65 33.0 2e-10 MKADMLKIIAVLLLLLVVFVVLYAIRNLSYDYSGEKFRKSRAFSLGLKEKQFYLNDGNVI NYVEGPNNGSAMLLLHGQMVDWKDYRFVLPELIKDFHVFALDYYGHGKSSKNPDLYNIER IGSDIALFIQEKIGSSAIISGHSSGALIAAYIAAKYPENLKAIILEDGPFFATEKVRAES TFSYKTFQNIYNYLAEKPNITYFEYYLNNDPMRALFNKDGKDNWNKIVAKPAMKIFRKDM TKIPIIWYYTPKLGVNTLLQLTANLQDKTGDYDLRFGSTFYDFSFFNCIKQRELLKQIHI PTCIFHVKPPKNTAPSYYNEEGILISAMDEKDAKLVKELIHGSILVEGFDSMHNIHIEKP KEYLKKVIEFLDDIDELKIIGENT >gi|289656164|gb|ADCS01000026.1| GENE 93 89985 - 90743 925 252 aa, chain + ## HITS:1 COG:MA4170 KEGG:ns NR:ns ## COG: MA4170 COG1145 # Protein_GI_number: 20092963 # Func_class: C Energy production and conversion # Function: Ferredoxin # Organism: Methanosarcina acetivorans str.C2A # 5 236 14 245 294 70 26.0 3e-12 MIGIYLSGTGNTKHCVEKLVYLIDDKSKCLPLEHPQIVHILEKHYIIVLGYPTQFSNAPF MVRDFIKKNSSLWKGKKVFCVNTMGLFSGDGTGCTARILKKYGAEILGGLQIKMPDSVCD SKLLKKDIEENRQVVKNADKRIEQVAEQIRCGKYPQEGLSFIAHIKGLFGQRLWFYHKTL GYTDKLKISDACIGCGLCSRECPMGNIKIKDKKAVSGEQCTMCYRCISLCPQKAITLLGD QVIEQCRYEKYK >gi|289656164|gb|ADCS01000026.1| GENE 94 90789 - 91199 479 136 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299143888|ref|ZP_07036968.1| ## NR: gi|299143888|ref|ZP_07036968.1| hypothetical protein HMPREF0629_00752 [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 136 1 136 136 242 100.0 5e-63 MKSIWNNWLKQAVFIYSVLYTVATISNSALYILNGQYEDPNGNWHELDRAIIVFIMILAY MLIKNLKLKNYWFKAIAVYIPTLLLVFGYVWMTGLREPLAPSAYRDIFINYTMGYVAVSV AGRIKTYIKPKNNEKK >gi|289656164|gb|ADCS01000026.1| GENE 95 91664 - 93436 1889 590 aa, chain + ## HITS:1 COG:FN1280_2 KEGG:ns NR:ns ## COG: FN1280_2 COG1864 # Protein_GI_number: 19704615 # Func_class: F Nucleotide transport and metabolism # Function: DNA/RNA endonuclease G, NUC1 # Organism: Fusobacterium nucleatum # 329 590 1 262 262 382 67.0 1e-105 MLRGIIEEKEISKERFEAKQNQIQEQALKRFVENNSKRDTAIEELSIKNNILKSRRKVLN EYDSIAMERIMGKSDLFPISYLQMGINSGDSICRIQIRDDKGSFIGSGTGFLVSENVLMT NNHVIDSMRTALNSLAEFNYQDDVNFMPCTTCSFRLNPEQFFITDEELDFTLVALKDNPS SEKSPKDFGHLHLISEEGKVLEGEYVSIIQHPNGGPKAVTIRENKVSSIFDDFIHYLTDT EPGSSGSPVFNDQWIVVALHHSGVPNPNKKNAWIANEGIRISSISNYFAKKFDTFTAEEK MFIREIFPNLDICSEPDSTKPAPSQRDMGYDSTFLGLEHRVELPQLSDEMKKDVSCMNNG SYVLDYTHFSIVMCRSRCLAYFTAVNIDGNQAKNIKRSGDSWNFDPRIPKEAQYGDELYA KNDLDRGHLVRRLDPVWGDNAMQANSDTFHFTNSSPQHKNLNQKIWLDLENYILQNAQNH NLKVSVFTGPIFRSDDMIYRGKFKIPAEFWKVAVMIKDNGEMSATAYLQTQKNMIENLEF AYGEYKTYQVPVARIEEITGLDFGELSKYDPIANIESSGMAIRAPEHIKL >gi|289656164|gb|ADCS01000026.1| GENE 96 93455 - 94408 1014 317 aa, chain + ## HITS:1 COG:FN1281 KEGG:ns NR:ns ## COG: FN1281 COG4870 # Protein_GI_number: 19704616 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Cysteine protease # Organism: Fusobacterium nucleatum # 5 316 8 316 320 471 68.0 1e-133 MKVFYRQRRFMMGDKAGEPLTTGWLPPLPDMRDYSNEHPVISELSMKLGINGSNKTEIAN SLPDSVDLREWCSPVEDQLSLGSCTANAVVGMVEYFQKRAYGTHIEGSRLFVYKATRKLM LSTGDSGAWLRSAMGALVLFGVPDEKYFPYTFDGKNVNPDWDSEPDAFLYSLANHYSAIN YFCHDPLGKRTSKKDVLRNVKTYLAAGIPSVFGFFGFPSFENSDSPGSIPYPCKNEQAEW GHAVMAVGYDDDKVIINTKNNEKTKGALMIRNSWGKTWGQNGYGWIPYDYILDGLAEDFW SIISMEWIDTKQFGLSC >gi|289656164|gb|ADCS01000026.1| GENE 97 94761 - 95057 336 98 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299143891|ref|ZP_07036971.1| ## NR: gi|299143891|ref|ZP_07036971.1| hypothetical protein HMPREF0629_00755 [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 98 1 98 98 130 100.0 3e-29 MKKGCKYVGIILSAILPIVTLMDFNGINVGHLYNWLWCGFYGCIIVCILSKSKIYKAVAI ILNLMVISLLTLGALMGGIYGLWIILLHLLIPFYSALI >gi|289656164|gb|ADCS01000026.1| GENE 98 95313 - 96692 881 459 aa, chain + ## HITS:1 COG:BH0865 KEGG:ns NR:ns ## COG: BH0865 COG1012 # Protein_GI_number: 15613428 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Bacillus halodurans # 9 444 1 437 452 439 48.0 1e-123 MMEKKNIELKNIVEKQKKFFNTNTTKPVAYRIEMLQKLKKVIEDHEEVILSSLYEDLSKS KAEAYMTEIAMVYGEIHEALKNVKKWSRPQRVKGTLSTFPARNYIYSEPYGVVLIMSPWN YPFNLAIAPLVAAIVSGNCAVIKCSKESSHTSKVIEKIINETFEENYIFCVDANIDYDEV LYQKYDYIFFTGSPRVGKIVMRAASDNLIPVSLELGGKSPCIIDETADIELAAKRIAWGK LLNAGQTCVSIDYVVVHSSIKDVFIKALQEEIGLRYFDAVNNDTYPRIINERHYERLLNL IKTEKNVIGGQKNDKERKIGPTIFPDVDFNHEIMKEEIFGPLLPVIEYDDINEVIHIIKE REKPLACYIFSQEKKNSDYIIHSISYGGGCVNDVILQTANHHMPFGGVGYSGMGAYHGKS GFDILSHKKGVVRNKTIFDLPFRYAPFNEAKFKKIKGMM >gi|289656164|gb|ADCS01000026.1| GENE 99 96727 - 96885 72 52 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVNDDMKEISPCTPPVFSRDDRKIYRDYITTLVISTEVLKGRNGEISSQFKR >gi|289656164|gb|ADCS01000026.1| GENE 100 97386 - 100439 3833 1017 aa, chain + ## HITS:1 COG:lin0202 KEGG:ns NR:ns ## COG: lin0202 COG4932 # Protein_GI_number: 16799279 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted outer membrane protein # Organism: Listeria innocua # 40 521 54 530 681 80 24.0 2e-14 MLCGVFVPTQTGSMVYAKEVEGDVITEARVTNGEGVPFKPGEKIGAWQPFRVYAKFKLPD NIVKEGDTTTMTLPVGFNTSAPSTFQIKDADGKVIANATLYNEKPGRIVLTYTKYVQEHS GVQGEFYFNVSVNAETQTGSGKIPVTLTVNGKVIPAGEVDYNPPHFTNTQFSKAGWMTGD KTEGKYDIRINQDNVVLVKAKFEDTIQSENVSFIQDSLEIWNGKWENHGSYVVLGGKKDV TQEFKDAGKIKFDGKKLTIDIGDYPESNEKRGFQILYKVKLGYEPVAGEEIKNTAKLTYG EDNYSQESTYKIKDAGGTGEGYVYKIQILKTGKDNTPLAGAKFDVIRVRNNQTVGTITTD SNGSGEIGNLLKDEYKLVETEAPKGYQRLKEPIEVKVSDFGDNKIALKTIENKPEEKVEV SVEKKWVGPAKDSVLVELKKVGSNDVLQEYELKASDNWKHTFTNLPKYENDGTEIKYEVV EKTVPNGYEVSVSGSMENGFIITNKNVEKVDVSVEKRWVGAVGNSVTVQLKKVGDETVLQ EKELNAAGNWKHTFKDLDKYAPDGSLIEYRVVEKTVPNGYTVSYGVDSIGTCIIKNTQNK IEVKVTKKWEGITENYPTIKLQLLKNGQKEGAPVELTNGTTTHIWTNLNKTDENGIDYVY TVKEVGENGNNIQLDGNWYKVTYGGDQQTGLTVTNKKLKPWTPMIPPTRDIKVTKLWVNS NGNPIVPPTNKIIVELYKDGKATGKTLELSESNNWSGVFKKLEVANGLGSTDYYKYTVKE VGETAGSIKFDGKWFNVSYTGNMKDGFTITNQKERPWTPMEPPTREVKVTKLWVNSNESP IIPPTNKIIVELYKDGKATGRTLELSASNNWSGVFKNLDVANGLGSTDYYRYTVKEIGEN GNTILFDGKLYKVVYGGNMRDGFTITNEKEDPQTPPTPTPNNPTPKEPTPKNPEKPNNSI TPEKKVPDTPNNKPKVNINKTIPKTGDITNISLYIGLMLAAGTLLALIEYRSKKQSK >gi|289656164|gb|ADCS01000026.1| GENE 101 100924 - 101964 1038 346 aa, chain + ## HITS:1 COG:lin2325 KEGG:ns NR:ns ## COG: lin2325 COG0420 # Protein_GI_number: 16801389 # Func_class: L Replication, recombination and repair # Function: DNA repair exonuclease # Organism: Listeria innocua # 1 271 4 289 411 79 25.0 1e-14 MRILHTADLHLGRFYRGELPKDIAILRREELWKSFENTIEYAIGNNVDVLLICGDVYERD FFTATDMLRFKKLLDKLENTETFIIAGNHDYLSDNSLFFNVNFSDKVHIFKDEDYFEVPH LNLRVYGRSWDRQFDFDTKLDWELDLNYTNLLMLHGMVDDKNYFGIDNTFIKASKFDYIA LGHIHVMQKMSERCYYSGTPEPLSFKDIGKRGFIIADISGKNISVREIDNSIREYRQFEI NIDMEMSVTDVENKVIELLNGSENNFNTVILKGYFSVPEYLISYLEASINYFYVKFLDEL HVEYSMEELLENNRNNLMGKFILEMQSDKLALEYGVRELLAARNEN >gi|289656164|gb|ADCS01000026.1| GENE 102 101924 - 104272 1890 782 aa, chain + ## HITS:1 COG:no KEGG:Cphy_0103 NR:ns ## KEGG: Cphy_0103 # Name: not_defined # Def: hypothetical protein # Organism: C.phytofermentans # Pathway: not_defined # 11 781 1 700 711 135 23.0 5e-30 MVLENFWRREMKIKEIGLVEFGKFHKHIIKLNDGLNLIEGPNESGKSTIFSFINGILYGF AKPSKNRRSFEEDLEKYKPWVGDDYRGYLKLYDDKTKTEYIVEKDFNKEKLSVLNLNTGE QLENRDEFTTFSKVKQAGAYFFNVDSKVFSNTFFIGQKNLKINSDSYESIRNELEKFANA GDEKYDANLAISLLEEKLKTIGRESISKSEIGVLNSKVNRLNAKLLEYDGAEDEYLKLKE REKSIDREIDSSKKNISIERELSEQADYNNIISMTEELKHLKELQKNNSGISAEEYQKIV EIDEKSKNFKEKLKELQFEDVTGDKSIDGRYYNQLLSDYNEVKRLNKRILELNSINYSKE MEILSRDIIVSTSKANKNLAKIIFSLFLVGLIAVSSLIFKKYYINVISIFILIYTYLRIA EYKISKDVVKRVESRIDEYHKLSDAKTAEKKKMDVEFQKFLDKYNVDDIANLEDEISSKW DEAKKHNIRIELKKTETAKKQKEIEFLKNEIEKIEVEIQRICVKNNVSTILELKEKFKNN MDSSSIETKIQGLNKIIELTLKGRNLESLNHGIDVCDIEIKADKDQLKELEIEQAKLEKE ISICEEKLKEKQSLVEDLNYKKEELSEKTEHKNAITRAIEKIKELSEKSKVEILPQLTKN IAHYLKLITDKKYTQLIVDYEFNIKVFDEDVKSYIDAKNLSNGTLDQLYFCFRLALLDMI IKDAPLFLDDIFIQYDDERFLNTLKFIEEESKKRQIVIFSATNREKSALDKIGANYNYIE MR >gi|289656164|gb|ADCS01000026.1| GENE 103 104275 - 104958 461 227 aa, chain + ## HITS:1 COG:CAC0640 KEGG:ns NR:ns ## COG: CAC0640 COG1768 # Protein_GI_number: 15893928 # Func_class: R General function prediction only # Function: Predicted phosphohydrolase # Organism: Clostridium acetobutylicum # 2 220 3 223 231 198 45.0 5e-51 MIWALGDLHFDPIGDKPMDIFGKKWINHEGKIISYWKEKVSDDDLVLLPGDISWGLKLKD ALSDLQKIDALPGNKIISKGNHDYWWGSLSKMNSLGLKTIKFLNNNSYVYNDIEIFGSRG WMPKDFQDFSKNDEKIYQREVLRIKNSLESGTGAKKKIAMIHYPPFNQDFTTNEFSNLFS EYGIDICIYGHLHADGHKYVVEGNINGVEYICVSSDYVDFKVQELKI >gi|289656164|gb|ADCS01000026.1| GENE 104 104955 - 105503 681 182 aa, chain + ## HITS:1 COG:CAC0650 KEGG:ns NR:ns ## COG: CAC0650 COG1437 # Protein_GI_number: 15893938 # Func_class: F Nucleotide transport and metabolism # Function: Adenylate cyclase, class 2 (thermophilic) # Organism: Clostridium acetobutylicum # 4 175 2 172 180 74 33.0 8e-14 MIEREIEVKLLGLDIYEVEKELIKRGATLIAREYQENLNIDSSVNPIKNNAKGYLRIRYV KNLLNNEENIYITFKEQITNKGVRENIEHTSEITDKEQMISILKLLGYDIYDIGYKNRVS YMYKNNRFDIDTWDKNTYPYPFIEVESKNEQELYSIIDELGIDKEAISTKSIAELKKSVK IV >gi|289656164|gb|ADCS01000026.1| GENE 105 105553 - 107907 2831 784 aa, chain + ## HITS:1 COG:APE0650 KEGG:ns NR:ns ## COG: APE0650 COG0574 # Protein_GI_number: 14600866 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate synthase/pyruvate phosphate dikinase # Organism: Aeropyrum pernix # 7 784 31 838 845 726 48.0 0 MSQYTYIKWFNEINKEDISLVGGKGANLGELTHMNLPVPPGFCVTAGGYDKFIEYAELDE VVKFLMESLDVDNVDSLTEVSKAIQKKINESKIYPKLEEEIVSAYREFSQSINVVDPEVA VRSSATAEDLPDASFAGQQDTYLHIRGEEELIKHVRSCWASLWTSRAIYYRQKQNFDHFN VSLSVVVQKMVNSEKSGVMFTANPINNNKDEMMINASWGLGEAVVSGIVTPDEYIINKKT GEIVEKNIASKEFMVIKKSIGVGTEQVDVKEHLGEEYINKECLTDEELKTLIERGIKVET LYGSVQDTEWGFDRDTKEFYFLQSRPITTLKEEKKEVLKPLVKGLPASPGIGRGQVRLIK DISEINLVQEGDILVTEMTNPDMVPAMRKAAGVVTDEGGRTCHAAIVSRELQIPCIVGSK NATKTLTDKMEVTVDATRGVVYEGYVLKEENKEEKQSTGGQSVLQVTKDLTMSLRNLVAP VTATKIYMNLGEPELIEKYKDLPFDGIGLMRTEFIFTNMIGAHPMYLVKTGKHDLMIDKL AEGISKVAQAIYPRSLVVRMSDFRTNEFRGLKGGDEVEPIEANPMIGWRGVSRYISPEYE EGFRLECKAMRKVREEYGLTNVIAMLPFVRTPEELVTVKEIMASEGLKQSKNFKIWIMAE VPAVVFQAEEFAELVDGFSIGSNDLTQLVMGADRDSGVLNNMGYFDERNEPVKRALKILI DACNKKGKTCSICGQGPSQYPELAEYLVECGVTSMSVNPDTVEYTRRLVASVEQKMILKK LRNM >gi|289656164|gb|ADCS01000026.1| GENE 106 107994 - 108236 87 80 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKRSLHAHLRRLVEMTLFFVISTLSLYFCHFDCNAVSIFSLVISIVVLKGRNGEISYNDK RKEISPLQFTPLCFVHFRSR >gi|289656164|gb|ADCS01000026.1| GENE 107 108878 - 108998 60 40 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNKKFLSLVLALVMVLGTFTSVFAAEETKKEEVKKVEGKQ Prediction of potential genes in microbial genomes Time: Fri May 27 07:36:11 2011 Seq name: gi|289656163|gb|ADCS01000027.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.27, whole genome shotgun sequence Length of sequence - 1745 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 270 - 329 11.0 1 1 Tu 1 . + CDS 470 - 1745 1313 ## TherJR_2871 S-layer domain protein Predicted protein(s) >gi|289656163|gb|ADCS01000027.1| GENE 1 470 - 1745 1313 425 aa, chain + ## HITS:1 COG:no KEGG:TherJR_2871 NR:ns ## KEGG: TherJR_2871 # Name: not_defined # Def: S-layer domain protein # Organism: Thermincola_JR # Pathway: not_defined # 3 206 2 184 872 80 33.0 8e-14 MNKKFLSLVLALVMVLGTFTSVFAAEETKKEEVKKVEGKQQKIQYLVDNKFVEGDEKGQL NLSDNIKRSEITKLLVYGNGHKALSEKLQGSMKLYKDVETSHWANGVITVGSTVPSTANG QAMLNGYPNGTFLPDNNVTYAELAKMLVVLVKKDLTADMVKKANANWASQWMTWAAELGI LQDVTVANSNAPATREDAFTMMYNALYAMKYIKKMPANETMGILSQLKNSELTLNQGDKA KTVKITNDTTFVLYNQHNTLDVNADAKSKVKNVFSNAVKVSSISNPSYYYGSLVRVLVND KNEATHILELGNPRYLALGHSDNAKWQHTAITDNVIDPNRRWVDVADATVETSLTKEVTP NGGYGVAAKINYYNGNAKSITFAEGTLSRKPQNETGKEVYNNNFNFDRKGKSELNLRLTS TTRYF Prediction of potential genes in microbial genomes Time: Fri May 27 07:36:17 2011 Seq name: gi|289656162|gb|ADCS01000028.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.28, whole genome shotgun sequence Length of sequence - 2183 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 1860 2183 ## gi|299143900|ref|ZP_07036980.1| hypothetical protein HMPREF0629_00764 + Term 1883 - 1916 3.1 Predicted protein(s) >gi|289656162|gb|ADCS01000028.1| GENE 1 1 - 1860 2183 619 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299143900|ref|ZP_07036980.1| ## NR: gi|299143900|ref|ZP_07036980.1| hypothetical protein HMPREF0629_00764 [Peptoniphilus sp. oral taxon 386 str. F0131] # 240 619 1 380 380 696 100.0 0 HTAITDNVIDPNRRWVDVADATVETSLTKEVTPNGGYGVAAKINYYNGNAKSITFAEGTL SRKPQNETGKEVYNNNFNFDRKGKSELNLRLTSTTRYFVADVLRNQLTEVKNVDEAIRIL GNTTASNWFLDVYAGYENHSGRKPYETSTNTVLNDYNEATVVVFNAVQRDNNNAQLLRVK NEATTKYDITFENEKGEVVVNNVTTYRNYFPFNFNTHNDSAKLDVVEYTVNNAYGLEAEM IIDHSNTGRYPIVEVIGIQGRDIIVRGEFGETAVLQLDTDYALFLRGQLKVGALIQFHTL TNNVLPKDNKDVNKTNVVDVVSVMPANAGFTVRGSLRKVVEGNQANQSAGVVALKDFTDY GAQYQKVILSEIRNLYVASQYNQLGYFVLNNTEANALKAWLEAKPGKVDTIRFKVKPFNG YDKEFEIYDIEVLKDSNWVEVRTLVKDKLAELREAVRVLANKYPTEDSVTNENVFKFEEE LNAVKALVAALVFPEDAAWNATDSVNGIYFNKLDTMKGWNLDAKKQAYVDNKADGVVANL PKEVKVAHNHETDTKAVKAAVKLAIEKYLNDSSITVEITSPADGDAITNPVASIKFKLTK GGKTSAEKELTNIAVSALN Prediction of potential genes in microbial genomes Time: Fri May 27 07:36:43 2011 Seq name: gi|289656161|gb|ADCS01000029.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.29, whole genome shotgun sequence Length of sequence - 23368 bp Number of predicted genes - 16, with homology - 16 Number of transcription units - 9, operones - 4 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 202 244 ## gi|299143900|ref|ZP_07036980.1| hypothetical protein HMPREF0629_00764 + Term 225 - 258 3.1 + Prom 539 - 598 4.1 2 2 Tu 1 . + CDS 636 - 1121 541 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Term 1125 - 1160 4.1 3 3 Op 1 . - CDS 1149 - 2582 1445 ## COG2239 Mg/Co/Ni transporter MgtE (contains CBS domain) 4 3 Op 2 . - CDS 2593 - 4410 1819 ## COG0210 Superfamily I DNA and RNA helicases - Prom 4430 - 4489 8.5 + Prom 4475 - 4534 10.2 5 4 Tu 1 . + CDS 4635 - 5429 746 ## COG0778 Nitroreductase + Term 5468 - 5494 0.3 - Term 5456 - 5482 0.3 6 5 Op 1 . - CDS 5490 - 7118 1554 ## gi|299143905|ref|ZP_07036985.1| hypothetical protein HMPREF0629_00769 7 5 Op 2 . - CDS 7187 - 8728 897 ## Cphy_3007 hypothetical protein 8 5 Op 3 . - CDS 8715 - 9431 248 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 - Prom 9457 - 9516 7.6 - Term 9476 - 9522 9.1 9 6 Tu 1 . - CDS 9569 - 10318 941 ## COG1648 Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) - Prom 10343 - 10402 9.9 + Prom 10394 - 10453 9.6 10 7 Tu 1 . + CDS 10480 - 12474 2141 ## Dtox_4160 S-layer domain protein + Term 12485 - 12520 5.3 - TRNA 12565 - 12638 70.5 # Cys GCA 0 0 + Prom 12720 - 12779 7.0 11 8 Op 1 40/0.000 + CDS 12804 - 13826 1057 ## COG0016 Phenylalanyl-tRNA synthetase alpha subunit 12 8 Op 2 . + CDS 13836 - 16217 3333 ## COG0072 Phenylalanyl-tRNA synthetase beta subunit + Term 16224 - 16270 8.3 13 9 Op 1 . + CDS 16281 - 16823 682 ## gi|299143912|ref|ZP_07036992.1| putative repeat organellar protein 14 9 Op 2 2/0.000 + CDS 16816 - 19194 2113 ## COG0826 Collagenase and related proteases 15 9 Op 3 . + CDS 19178 - 21553 2855 ## COG1193 Mismatch repair ATPase (MutS family) 16 9 Op 4 . + CDS 21614 - 23323 2024 ## COG0018 Arginyl-tRNA synthetase Predicted protein(s) >gi|289656161|gb|ADCS01000029.1| GENE 1 2 - 202 244 66 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299143900|ref|ZP_07036980.1| ## NR: gi|299143900|ref|ZP_07036980.1| hypothetical protein HMPREF0629_00764 [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 66 315 380 380 112 100.0 5e-24 TKAVKAAVKLAIEKYLNDSSITVEITSPADGDAITNPVASIKFKLTKGGKTSAEKELTNI AVSALN >gi|289656161|gb|ADCS01000029.1| GENE 2 636 - 1121 541 161 aa, chain + ## HITS:1 COG:CAC2751 KEGG:ns NR:ns ## COG: CAC2751 COG0454 # Protein_GI_number: 15896008 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Clostridium acetobutylicum # 1 160 1 167 167 118 42.0 6e-27 MIFRRANNDDIVFINKMYGDGSKLLGTLGVDQWQNDEMPSADLNDDIYVLDDEGIVATAV LMEHDKQYDVIYEGKWISDDSYFAIHRVATSEDKRQMGYAKILFDEIEKFAILSGKKSLK VDTHRDNIPMQNFLKKMGYVYCGVIILDILKERLAFEKILK >gi|289656161|gb|ADCS01000029.1| GENE 3 1149 - 2582 1445 477 aa, chain - ## HITS:1 COG:mll1318 KEGG:ns NR:ns ## COG: mll1318 COG2239 # Protein_GI_number: 13471369 # Func_class: P Inorganic ion transport and metabolism # Function: Mg/Co/Ni transporter MgtE (contains CBS domain) # Organism: Mesorhizobium loti # 43 470 38 464 470 247 33.0 3e-65 MEFEPKKMPDTETEETDIQKEYETEQKYEFETEGIEEKLKDILKDNDKEAAEELCRDVHY VDIANGLDDLDEDELKQFMFLLPEEDVAGILESAWEELQQKICSFYTNDQLIDIFSYMTN ADAADLLGILPTYRRKDILRFMKKSDSNILKLILSFDEESAGGIMTTEFIALKETLTVRE AINKIKQIAPETEIIEYLLITDKLHRLQGLVDLRKILVANDNTLLKDLLEEFPFYVYADD DQELAANIITKYDLTILPVVNKNMAILGVITSDDIISVIDQEYSEDILAMSGVSKDEEFD SGFFESFKNRIPWLIINMFTAFLASSVVGAFSSTIAAVVALSAAMPIVTGMGGNAGTQTL SIVLTSIARGEMNLKDDWKLIFKEIGLGLLDGAIIGIITGITLTIMYKNIFLGVIMFFSM ILNMIVAGVTGFLIPLILDRANIDPAVSSSIILTTFTDTCGFFIFLGLATVFLSKLL >gi|289656161|gb|ADCS01000029.1| GENE 4 2593 - 4410 1819 605 aa, chain - ## HITS:1 COG:BS_yjcD KEGG:ns NR:ns ## COG: BS_yjcD COG0210 # Protein_GI_number: 16078247 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases # Organism: Bacillus subtilis # 3 602 136 749 759 244 29.0 3e-64 MKLSDEQLKTTYHMDGPALVLAVPGAGKTTMLLYRTMQLIQNGINSDRILTITFSKSASL DMKSRFKKLFPNFKRELNFSTIHAFCYGIIREYSKLRGKTYRLIEENSISKFELLSKIYY EINKKTVTEENLEAIINKISYFKNTLLTPNETNTDIPNFVKLYNFYEQYKLKNGLIDFDD MITEALKILKTDDYIRAKYKNKFDYYQLDEGQDTSFAQFELIKYLCAPKNNIFIVADDDQ SIYAFRGAEPNYLLNLNKIYKNLKTYYLQNNFRSSKNIVNTSNLFIKNNFNRFDKNIITQ NDYLEPVNIIKLSTNDDEYNYIYDKITSEPLKSYAIIYRNNLSSLGLIEFLERKNISFNI KGAKLKFFSHFVVKDILLILEFSNNLSDIEIYSKIYYKLNGYISKKHIDYLKKNGGKNLF KTLLDYPLLPEYYRENIFKLMSEFKTLKNLDFKYQIEYILNELGYDHYLREYAKKFGFSY ESLREFAHYLKYIATFEKNLDTLLARLKYLEHITNTPKNSKSNITISTIHSIKGLEFNTV FVIDLVEGVLPSNKSHLDDMLFEEERRLFYVAMTRAKNKLYLIYPKYHNNNECEISSFLT ELSKL >gi|289656161|gb|ADCS01000029.1| GENE 5 4635 - 5429 746 264 aa, chain + ## HITS:1 COG:MTH933 KEGG:ns NR:ns ## COG: MTH933 COG0778 # Protein_GI_number: 15678953 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Methanothermobacter thermautotrophicus # 6 230 7 205 243 63 26.0 4e-10 MVMTNFLQKRKSVREFKNSAISSAELEKIREYMEVITKEEASVDFVLYENGKIIYEGLIG KAGYSGVMINSPHYIALTMRDTHRSTLLHAGYYLEKLNTKLIDMGLNTCWITVDKVDNHT MKSIFGAEGEYIDYLIAFGYEKEKKFYEREIFSARYEIDEIVFFNKIGQNIDIEELENRG LLEIFSSVRYAPSHKNFQPWRFVVKDSDVYVYMVKSDEDSRSLIDIGIVMFYFEEMAKTI GKYGKWSVILEDEEAYLKIAKFTM >gi|289656161|gb|ADCS01000029.1| GENE 6 5490 - 7118 1554 542 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|299143905|ref|ZP_07036985.1| ## NR: gi|299143905|ref|ZP_07036985.1| hypothetical protein HMPREF0629_00769 [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 542 4 545 545 855 99.0 0 MFCPNCGNKISEFDNYCPNCGKNIKNVKVSIISNDPKDQKKELQTDDVTRIFKPLSNING IDSTDELKNIIRAVDKKISENISDYEKKSKIESENTLGPKRNHADEIVDFTEKAKTDYKK EETAKVAKVTPKVKKLPPEDKPADNIKKEEPKKRSLKDMWHKFINEDDDEFSIFSSFDKE TNAVKKESVGVASSSDTSISMEDTMGLSKVQIEEAIARSEKAEKDKHIQKSESEKKETTS KNEQSSSENEKPQSLSYKNLTDLVNAEIKKSNVEPEKQTLFSNFTKNKTEKNPEDKKGLK NIFDFKKEKNDTNTTTTKTEKINIPKEQKKPEEKQKADIVKNVSDIPKSAGEKNSIVKQL YSIEDKLCSMIEKFNSKMSGKNSYKIIALIAMILTALPVIISLRAFSISLIVVIIMKILL KLSQFYISLNITTDKAWIESSFDEVKKFSIVNWMFCEIFLFIAYIFSPWNGMFKFELLAA LTPLPLATVILFLLSTLIAMAQYWPQLRNKSKVDFIAWYIIPFIILEFVSKFVFIFSTIF MS >gi|289656161|gb|ADCS01000029.1| GENE 7 7187 - 8728 897 513 aa, chain - ## HITS:1 COG:no KEGG:Cphy_3007 NR:ns ## KEGG: Cphy_3007 # Name: not_defined # Def: hypothetical protein # Organism: C.phytofermentans # Pathway: not_defined # 31 507 33 519 528 110 22.0 1e-22 MRLDKLKLLLNIEKRRFLNSNSNRKKLFTGITALIILGFFISIYVVSITVFLYNSYRQIL ITTFAIIGFIGIFVSTLRSGYSNLFGKSEYNIIFPLPFTDLEIILSKLAGIYLSSYYYVL IMLSFPVLYVLFKAYGIIATINGLLSLVFFPAIPVSLALLIASLGSKNFKFKYARQFFSI LLTLLIVLLYALIYVFRKLFYDNLYLAAVNVSRVFTTVLFPYKFFENAVVKNSIIETLLF SVISIAVAAIVSIYISKNYFKIHYKNNNTAKYKKSKALDFKKSSLSKTLFKKELRTYFSS SIYLMNTIFAPMFLTIIGIISIFLDDNSLNSLSGYKNLGEIVRLNIIFILCSFAAISQTT YCSMSIEGKNIWITLSLPIENKKIFISKIKVGMSIIIFPIIFCAIVFGIKYKLSVFDIVM FILTPISYSLFGNILGLLYDIKTANYSWNNENEIVKQRFSMILIQIILAIPLLITYFVSR KFNLNSSIMIFIVISIINTLLWIKLTKKKLYMD >gi|289656161|gb|ADCS01000029.1| GENE 8 8715 - 9431 248 238 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 219 1 226 245 100 27 1e-20 MLKIENLIKKYGNKEILHGINLEIESGDIFGFIGKNGAGKTTTIKCVVGLIEYDSGNILI NGMDNLENSLECKKITAYIPDNPELYEFMNGIDYLNFIADAFDVKQDIRMERIVKYSKIF DIHNNLNESISTYSHGMKQKLAIISALIHEPKLLILDEPFVGLDPTATHYLKEEFKNMCQ RGTAIFFSTHVLEVAQNLCNKIAIIKDGNIIETGLTNEVTKKSSLEDIFLELMKDEIR >gi|289656161|gb|ADCS01000029.1| GENE 9 9569 - 10318 941 249 aa, chain - ## HITS:1 COG:BU425_1 KEGG:ns NR:ns ## COG: BU425_1 COG1648 # Protein_GI_number: 15617024 # Func_class: H Coenzyme transport and metabolism # Function: Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) # Organism: Buchnera sp. APS # 1 165 1 162 214 69 32.0 6e-12 MRYLPVNYDTKNKNVLILGGGLLALSKIKELLNTEFKIYVIADSFVDEIKKLAQTNSDRL FTKEEKLTENFIFFAYDYLLIATNNFELNAAFEKRAQKSKILYERCDITSESTMLLNKVI EKDGLTVGISSSKLNPTITGILYEDISAMLEKYSSEKIKILNKIRTELIRKNSPNTDEII RELYDKEKLTLDTYLKNLNYKPEQVSENTENKEETANEITDENIEDIEIKEVEKTEVTEV LDTDKSETE >gi|289656161|gb|ADCS01000029.1| GENE 10 10480 - 12474 2141 664 aa, chain + ## HITS:1 COG:no KEGG:Dtox_4160 NR:ns ## KEGG: Dtox_4160 # Name: not_defined # Def: S-layer domain protein # Organism: D.acetoxidans # Pathway: not_defined # 20 218 17 194 834 74 33.0 1e-11 MNKRIVKALTIGLCTVMLVPNIVLAKEFKDVKKNGPYGWAYSYIDELSDKGIIEGYPNGN YEPDKAVSFEEVHQLIKGIINPTRDEINKAVEKYGSDIEKSGVASWAKEAIAISIDRSII TTDTLKEAKQNGFLSKGVKEKDLVYPNRNTIAVYYARALKLSAKGDESLLKHTDKDDIPI STRGYLASLVKENIFSPTGSDGKFEGKRYIRRSEMAKITKLSYDYAKSESLNTQTLTATG KVVLATTLNNLDTVIIEKDSKRSQFRVNASTTYKINGQAATFKDIKPEQEVKITYVTGTD STVTGIAKTVEVINSAKNLIGYVTNTHITGFTAKYRTNDSSVDTTKADMFNTTDNAMFTL ANGAKIYELGYEIKPEKLSFDELVEFKTDSSGKVTEAVAYPKTGSVTGYITKINSATSTT KSNIVLRLADGKEYTFYENQTSNFSSIFTDLRIGQNVTFTTNYKIAVRTNQNQSQNIETG RVINVRPRYSYENQVTPDLEVVIRTANKDLTLYTDKNTGLKVATGGYLSLNQNTLYNQYV RAEVNGNYIRAIEIIDPKASFDAVAQVISVKNDNAFGGALYNTIYTVRIIESNNPYLKLG SEKEISIGTSNTLNRLAVIRMMGTVDQNGDIGNGANVQFLRNENYELTPASSYTNNNVPV LNFN >gi|289656161|gb|ADCS01000029.1| GENE 11 12804 - 13826 1057 340 aa, chain + ## HITS:1 COG:CAC2357 KEGG:ns NR:ns ## COG: CAC2357 COG0016 # Protein_GI_number: 15895624 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Phenylalanyl-tRNA synthetase alpha subunit # Organism: Clostridium acetobutylicum # 1 340 1 339 339 421 57.0 1e-117 MKEQILDIKRRALENLKLALDVKEIENIRVSYLGKKGKLTLVLREMGKLSAEERPVMGAL ANEVRAKIESELNKKTSELNKVLLEKKLIEERVDITLNSDKLIVGHEHPLIKTLEELEDL FIKMGFRVYDGPEVESVENNFDLLNAPKNHPSRDLSDTFYINENTLLRTQTSPVQIRAMK EYGAPLRMVCSGRVFRSDEVDATHSPMFHQLEGLIVDKNISLANLFETLNIFVKTLFGDD MKTRFRPHYFPFTEPSAEVDVTCTVCGGKGCSACNHTGWSMELLGCGMVHPNVLRNCGID PEVYSGFAFGMGIDRIAMVKYGISDIRMLFDNDNRFLNQF >gi|289656161|gb|ADCS01000029.1| GENE 12 13836 - 16217 3333 793 aa, chain + ## HITS:1 COG:CAC2356_2 KEGG:ns NR:ns ## COG: CAC2356_2 COG0072 # Protein_GI_number: 15895623 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Phenylalanyl-tRNA synthetase beta subunit # Organism: Clostridium acetobutylicum # 144 792 3 654 654 520 43.0 1e-147 MLLPVKWLRDYVNIDKDVKIIADEITATGSHVESIENRAENLSKVVVGKIEKIEKHPDAE KLVVCSVNVGTEILQIVTGAKNVYEGAVVPVALVGAHLSGGVKISKGKLRGVESYGMLCS LGELGYDNSVISKEAKDGIFLFPEGTEIGKSAISVLDLDKEIIEIEITPNRPDCLSIIGM ARETAATFDMELSEPKIDILNEVDDIADYFNTVDIETENCDRFYARVLKNVKIETSPLWL QNYLVSAGVRPINNIVDLTNFVMLEYGQPLHAYDLDDLQDKKIVVRQAKNGEVIKTLDDE DRLLEEKDIVIADGKRAIGLAGIMGGFDSEIKDNTVNVLLEGANFDADSIRKTSKRLQLR SEASARFEKGIDINAPKIAVDRVCQLAEKINAAQVVKGSIDNYRKVREIADLNLRVEKCN RLIGFELNAEEIAGLLNRLQINTDINGEVITAHIPTFRLDIEIEEDLIEEVARIYGYHNI IPKPLEGSLTVGGRSELRNLEDRIKKVLLSIGYSEFMTYSFVSPSNFDKLMLDETDDKRK VVKIINPLGEEYSIMRTTLVSNMLEVLSKNEHRGNEYVAGFEFGNTFIPQGEGLPREELK LSMGFYDMGDFYFLKESIRRALWQVGILNLEYKRANINYLHPGRSAEIYVDGKYIGVFGE VHPLVAKNYELKKKCYVAEIEFEKLLENSIENYKFRELPKYPAMRRDLAVVIDRDIDAGE IELIARKHGKKLLEEFKVFDVYTGENIESRKKSIAFSMTFRANDRTLVDKEVNDIVSKVV DDLSKEYGANLRA >gi|289656161|gb|ADCS01000029.1| GENE 13 16281 - 16823 682 180 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299143912|ref|ZP_07036992.1| ## NR: gi|299143912|ref|ZP_07036992.1| putative repeat organellar protein [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 180 1 180 180 166 100.0 6e-40 MDKKRIKVQIDDMNFHIIGNDDEEYIKELANDLNNRINNMRSSNFKLNQNQNLILLALNL LDEKEKMKKEYELLQIIKEDDDVYKNSLDELEQLREENLKHLLDEQDFKNNISKLRDKIK SLEEDNTELRSEALNKNKKIEEMLAVINELKDEKNVLEQQIYDSQKRIMDLNREIESLNE >gi|289656161|gb|ADCS01000029.1| GENE 14 16816 - 19194 2113 792 aa, chain + ## HITS:1 COG:MA0538 KEGG:ns NR:ns ## COG: MA0538 COG0826 # Protein_GI_number: 20089427 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Collagenase and related proteases # Organism: Methanosarcina acetivorans str.C2A # 7 786 7 854 855 381 32.0 1e-105 MNKNNYEILAPAGSFEALEAGVKAGCNAVYLGGEKFSARSKAHNFSNEDLKKAVEYAHLR NVKIYVTINILIDDTEMREAIKFTEYLYKIGVDAIIVQDLGFSLFARKLFRGMEIHASTQ MAINNLYGAKTVEAFGFERVVLARETELSEIELIKEQTDLDIEGFVHGALCVCFSGECLM SSMIGARSGNRGDCAQPCRKKYEILDLDFNKVADEKYLISPKDLNTISSVKQLIDRGIYS LKIEGRMKKPEYVYQIVSSYKKAIEDEVNSEDKNNVKQIFNRGFTNGLFNGDFGRDFISY DRPDNRGVLIGEVISKTKSTYILLLNDKVNIGDGLEFNYNGNSIGLKSDFNSGNLKEYKF KTDKKIIVGSKIYKTSSKELLDSINFKLNESASYRIVNIRAEFRIDKKPVIEMECDGFVV REEIDTLVQKAQNRALDEERIRENLSKLGSTIYKAGLINIILDENIFMPKSAINELRRAA IEKLDRLFIKRDRAGIFVDNSIFNIDRKVKRSKAKLNVEINNLDDLKSLNEKKVNKIYFP IDKITDDVISYLKEKNIMLSAVFKKFQNSKQLVESFDILKNNFHLFDEVLLNNLSQISLL NGIDIVKVADIGLNAFNSYSVKCLLEMGFDRVILSPELNNRQIKVISKNFADKIEVISHG LIPVMTMVHCPMSVELNCKDTKNCIKCKYSRGFYLKDGKGEKFLVERDRETSQIFNCHPI MLAEKVKNYMSMGIENYKLNLREDIDESVNLYSDILSGKSFNSDIIKDKLVKKYGAVTNG HYNRGILNGQSV >gi|289656161|gb|ADCS01000029.1| GENE 15 19178 - 21553 2855 791 aa, chain + ## HITS:1 COG:CAC2340 KEGG:ns NR:ns ## COG: CAC2340 COG1193 # Protein_GI_number: 15895607 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Clostridium acetobutylicum # 6 791 3 788 788 598 45.0 1e-171 MGNLFEKSKRILEFDKVIEKLKNIIVSDIAREMASEIDISTDINEINRRLDETSEAVNLI VKKGEPPLFGISAMKDYMRRVSIGGSLSAATLLSVSDFLRVSRYLKNYFNIDSKDGNYPI LQGLGEGLSSFKNIEDAINNAIISENEISDAASSKLASIRRQIVKKKDAIRDKLNSIVTS ESDKKYLQDSIITIREGRYVVPVKQENKSKVKGLIHDMSSSGQTVYIEPMAVVNYNNELK TLISEEREEIERILQELSNMVAGVSYEIAANEDILKEIDFIFAKGKLSLDQNASRPMLND RGYINLKAARHPLLNVKKIVPIYIYLGDEFTSLIITGPNTGGKTVTLKTLGLLTLMSQYG LHIPAQENSEIGIFDEVLADIGDEQSIEQSLSTFSSHMVNIVEILERATEKSLVLFDELG AGTDPTEGAALARAIMDYMLRKNIRTVSTTHYNQLKIYALTVDGVANASMEFNVDTLSPT YKLLIGVPGKSNAFEISKRLGLSDEIIDEARELISEDNIEFEEVLRSIEEDRSKIEEHKQ KAEIEQRKLEEHNKKLERELEKIRNSREKVISDAKDEARNLLSRTKENIELVLDEIYSIK EELSVEQARKLQQAQDVLRDNLRDVANNVKKVKIEKVKNPVKDLKIGDSIRSISLSADGV VLELPDADGNVLVQMGMMKMKLPKNTLVYSNENDTVQKTKTKKIIDRKSKLIKSEIDVRG ENFDEAKIIVEKYIDDAYLSGLKTIRIIHGKGSGVLREKLRAYLKKNKYVKSATDSAYNE GGMGVTIVELK >gi|289656161|gb|ADCS01000029.1| GENE 16 21614 - 23323 2024 569 aa, chain + ## HITS:1 COG:SP2078 KEGG:ns NR:ns ## COG: SP2078 COG0018 # Protein_GI_number: 15901895 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Arginyl-tRNA synthetase # Organism: Streptococcus pneumoniae TIGR4 # 2 569 1 563 563 557 51.0 1e-158 MINFKDEIVKILDGKIPELSEVEIRNAIETPPNYEMGDFAFPVFSLAKVYKKNPAIIAGE IAGSINSEYFEKVESKSAYINFFINKKELAETVLREVSEKNEDYGKLGIGKGENVVVEYS SPNIAKPFHIGHIRSTIIGDSLKRIYAFLGYNTIAINHLGDYGTQFGMLIVAIKKWGDKE VIKNDPIPELLKLYVKINAEAEADPALKDECRHWFNELENGNEEAYKLWEWIREISLDEF NKVYNMLDVHYDSFNGESFYSDKMPGEVETLKNSGALKLSDGAQIVDLEKYNLPPSLIIK SDGSTIYITRDIAAAHYRHETYHPKRNIYVVGSQQILHFQQLKAVLAEMGYDWSDEVVHV PFGMVSLEEGTLSTRKGRVVYLEDVLNKAKDKVLEILTEREKQRGEKIENKEELAAQVGI GAVKFQELFNQRIKDYVFDWDKTLTFEGETGPYVQYVHARICSLLEKGNFDKENKFNASL LTLDEELNLLRTIYKFTDVVIDAHEKYEPYFITRYVVELAKLFNKYYNSTQVIVEDEELK NARLMLCYAVKTVIKEGLNLIGVAAPEKM Prediction of potential genes in microbial genomes Time: Fri May 27 07:37:31 2011 Seq name: gi|289656160|gb|ADCS01000030.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.30, whole genome shotgun sequence Length of sequence - 4601 bp Number of predicted genes - 4, with homology - 3 Number of transcription units - 3, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 46 - 2235 2111 ## GYMC10_5883 copper amine oxidase domain protein - Prom 2255 - 2314 14.2 + Prom 2294 - 2353 10.2 2 2 Op 1 . + CDS 2379 - 3122 535 ## Amet_1723 hypothetical protein 3 2 Op 2 . + CDS 3122 - 4228 1079 ## COG0457 FOG: TPR repeat 4 3 Tu 1 . - CDS 4467 - 4601 329 ## + 5S_RRNA 4473 - 4539 97.0 # AE015927 [R:2797299..2798807] # 5S ribosomal RNA # Clostridium tetani E88 # Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium. Predicted protein(s) >gi|289656160|gb|ADCS01000030.1| GENE 1 46 - 2235 2111 729 aa, chain - ## HITS:1 COG:no KEGG:GYMC10_5883 NR:ns ## KEGG: GYMC10_5883 # Name: not_defined # Def: copper amine oxidase domain protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 28 543 57 579 900 271 32.0 9e-71 MKFNFKKKFLCLLFSLIIVLLPNSNVFAKQDFTETISPGVVREEHIVDYDGKSTVINLLK CDLTNPYLNLSVVAGKGKYTKRATVSEMANATDATALVNGDFFNMILQGSPEGPSIIEGK LQSSPCVYTGLYSLGITSDNTAMIEQISFSGKVTAPNGKSYPIDGLNKSYYWYEPTNEYS HQNKIQLYNDFWASKSRGDKKNTEILVNSDGVIEKISESKNFDFSVPDGKYILQVEGKAY EFIKSNVKIGDKINIEYAITPDKDFKFLIGGHALLVDNGEVVKYTKDINVLGGVRARTAA GISQDGKTLYIASAEGRTKRSSGLKLSQLSDFMKSIGAYKALNLDGGGSTAMVLKNLGEF ERTRVINPERNAGERKVVSGIGIFNTAPDSNVVAGVKIKGPNIMVVGESAEFGLGGAWNE NLKPIKTDNLKYSLLGMNQEDGTWNENLFLALVPGEINLILSTEEGISATKKIEVKDFNY IEKLIVNTDKKRIAENETLNVTTKAILKNKKEVILSPRVLTYALDGFNGEFDQNGNLKIL SFNGKAVSDIIVNAGSISSVAKIYDHSAKLIKMNIDKKSYMINEENKTMDSAPFIKNDRT FVPVRFIVEGFGGDISYDETAKTVNILYADKNISIPLNEKYISINGNNQEIDAAAFIKDG RTFVPIRFIAEALGMDVSYEGSSKTISILEIPNNAQDVIPQTQPENVEHPKTNSNKNTVN KNQNSTVPN >gi|289656160|gb|ADCS01000030.1| GENE 2 2379 - 3122 535 247 aa, chain + ## HITS:1 COG:no KEGG:Amet_1723 NR:ns ## KEGG: Amet_1723 # Name: not_defined # Def: hypothetical protein # Organism: A.metalliredigens # Pathway: not_defined # 1 244 1 247 250 63 24.0 8e-09 MNYMNDLKMVYLKAIKETEIRIKKNPVVLLFPMIYGLLIFASTIIFGMFTTTLLGNTYIM GFLAPVLYSLIMSSYFEFLSDINSYNRIRFNNIGNTFTKNFRQIYSVYFIMILISYITSF VGDLYFILSFVIFILLNPISEAVYIRGESYISAYSYSLEFMKDNALHWLVPLFIYLGVIY LAVGKYDTLTLLYNPISLLTGIKFNAANIFKFVGSSFLTAVYVIFRGALFNILSRSTMRK RQYMGEI >gi|289656160|gb|ADCS01000030.1| GENE 3 3122 - 4228 1079 368 aa, chain + ## HITS:1 COG:CAC2336 KEGG:ns NR:ns ## COG: CAC2336 COG0457 # Protein_GI_number: 15895603 # Func_class: R General function prediction only # Function: FOG: TPR repeat # Organism: Clostridium acetobutylicum # 1 368 1 355 357 65 24.0 1e-10 MYLEKIVKDSLKNIVFLELKSKTKVGNIELDTETPLPINLNSLIGGIKKGKLGENINIEI IDEAIVYLLGIEPDFKYSDDYVKIINSTIKNLKEYIMYLSYMASKNSNYIDSYIYIKSAE LLLEYDEEVEFTKINIIEKIYNENLNKLKDDEKSKLLKDIINGYENILKVNDKNSLCYYR LGFINQGLKNYLKSKLYFEKFLNTASEDMEVLKNEVRDNLQELEDYANIETSQTYISYGK FQEAYKILQKVSDLYPNKDELYYLFSICQYNLGFKTEALNSIEEAIKINEKIENYYNQKS ICLISLGEESLAVENYKQAIDLIEDSYILNYNLGMLLFNIGNIEYKEYLKKAYHISPNDE LLKIVNEL >gi|289656160|gb|ADCS01000030.1| GENE 4 4467 - 4601 329 44 aa, chain - ## HITS:0 COG:no KEGG:no NR:no VLLTRPPLIQGFFVPKNSKSFSSLDLHVLGAPPAFVLSQDQTLN Prediction of potential genes in microbial genomes Time: Fri May 27 07:37:50 2011 Seq name: gi|289656159|gb|ADCS01000031.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.31, whole genome shotgun sequence Length of sequence - 1990 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + SSU_RRNA 260 - 1762 100.0 # FJ577254 [D:1..1503] # 16S ribosomal RNA # Peptoniphilus sp. 'Oral Taxon 386' # Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis; Peptoniphilus. + TRNA 1893 - 1968 94.7 # Ala TGC 0 0 Predicted protein(s) Prediction of potential genes in microbial genomes Time: Fri May 27 07:37:52 2011 Seq name: gi|289656158|gb|ADCS01000032.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.32, whole genome shotgun sequence Length of sequence - 3730 bp Number of predicted genes - 2, with homology - 1 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + 5S_RRNA 5 - 83 91.0 # AE015927 [R:2797299..2798807] # 5S ribosomal RNA # Clostridium tetani E88 # Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium. + TRNA 194 - 269 94.7 # Ala TGC 0 0 - Term 518 - 557 -1.0 1 1 Tu 1 . - CDS 598 - 1092 756 ## gi|154500172|ref|ZP_02038210.1| hypothetical protein BACCAP_03836 - Prom 1306 - 1365 3.2 + Prom 1240 - 1299 2.5 2 2 Tu 1 . + CDS 1430 - 1657 307 ## + LSU_RRNA 2128 - 2505 92.0 # AP008971 [D:613574..616579] # 23S ribosomal RNA # Finegoldia magna ATCC 29328 # Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis; Finegoldia. + LSU_RRNA 2591 - 3158 92.0 # CP000724 [D:13209..16143] # 23S ribosomal RNA # Alkaliphilus metalliredigens QYMF # Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus. + TRNA 3449 - 3523 81.4 # Asn GTT 0 0 + TRNA 3529 - 3617 76.6 # Leu TAA 0 0 + TRNA 3642 - 3718 83.2 # Met CAT 0 0 Predicted protein(s) >gi|289656158|gb|ADCS01000032.1| GENE 1 598 - 1092 756 164 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|154500172|ref|ZP_02038210.1| ## NR: gi|154500172|ref|ZP_02038210.1| hypothetical protein BACCAP_03836 [Bacteroides capillosus ATCC 29799] # 55 109 1 55 58 80 76.0 2e-14 MDRSHGFGSMTSNFRPIKTRFLYGSGTLYFNLARYHNSLARSTKSTRSWLLPVSLLVNIR FQFLFHSPPGVLFTFPSRYLFAIGHQVVFSLGGWSPHFPTRFLVSRGTLLCRYFFAFVYR TVTFFGSSSQMILLAIYTLCTVGLYPVRSPLLGISSFLSFPRVT >gi|289656158|gb|ADCS01000032.1| GENE 2 1430 - 1657 307 75 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MELLRQPGCWLRSSHTFKECVIAHWSSDSAPKITGAKLYTEAVDYESSGRGAMCKRRSIR RKPMWILQKRECWHE Prediction of potential genes in microbial genomes Time: Fri May 27 07:38:08 2011 Seq name: gi|289656157|gb|ADCS01000033.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.33, whole genome shotgun sequence Length of sequence - 13089 bp Number of predicted genes - 12, with homology - 10 Number of transcription units - 5, operones - 3 average op.length - 3.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) + 5S_RRNA 151 - 239 83.0 # CP000679 [R:2375147..2375262] # 5S ribosomal RNA # Caldicellulosiruptor saccharolyticus DSM 8903 # Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Caldicellulosiruptor. + Prom 19 - 78 2.4 1 1 Tu 1 . + CDS 204 - 266 92 ## + Term 361 - 427 14.4 2 2 Op 1 . - CDS 423 - 1844 1964 ## COG2195 Di- and tripeptidases 3 2 Op 2 1/0.000 - CDS 1844 - 3058 1357 ## COG2195 Di- and tripeptidases 4 2 Op 3 . - CDS 3114 - 4640 2200 ## COG1288 Predicted membrane protein - Prom 4671 - 4730 9.5 + Prom 4700 - 4759 11.2 5 3 Op 1 . + CDS 4912 - 6111 1323 ## COG2081 Predicted flavoproteins 6 3 Op 2 . + CDS 6165 - 7445 1441 ## COG4091 Predicted homoserine dehydrogenase 7 3 Op 3 . + CDS 7504 - 7917 497 ## COG1959 Predicted transcriptional regulator 8 3 Op 4 . + CDS 7960 - 8031 65 ## + Term 8074 - 8109 5.1 + Prom 8046 - 8105 3.6 9 3 Op 5 . + CDS 8127 - 11222 3386 ## COG0060 Isoleucyl-tRNA synthetase + Term 11236 - 11281 10.2 10 4 Tu 1 . + CDS 11291 - 11443 161 ## gi|299143926|ref|ZP_07037006.1| hypothetical protein HMPREF0629_00790 - Term 11498 - 11529 1.1 11 5 Op 1 . - CDS 11592 - 12824 1282 ## COG2309 Leucyl aminopeptidase (aminopeptidase T) - Prom 12846 - 12905 8.0 12 5 Op 2 . - CDS 12907 - 13089 205 ## COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain Predicted protein(s) >gi|289656157|gb|ADCS01000033.1| GENE 1 204 - 266 92 20 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MVLGWRRPGRVGIAGLNKGL >gi|289656157|gb|ADCS01000033.1| GENE 2 423 - 1844 1964 473 aa, chain - ## HITS:1 COG:FN1408 KEGG:ns NR:ns ## COG: FN1408 COG2195 # Protein_GI_number: 19704740 # Func_class: E Amino acid transport and metabolism # Function: Di- and tripeptidases # Organism: Fusobacterium nucleatum # 6 473 12 489 489 352 41.0 1e-96 MEYSQLEPKNVFKYFEEISQIPRGSGNEKAISDYLVKFAKERNLEVLQDESYNVIIRKPA SKGYENAKGVILQGHMDMVPEKGENSTHDFEKDPIELIVDGDNLHANDTTLGADDGIGVA MALAILDSDTIAHAPLEVLVTVSEETDLGGAQALSDKVLKGDYLINIDSEEEGIMTVGSA GGELYMAYFTPELSPTNEYKTYEFNFSGFMGGHSGVEIANPKGNMVVVMADFVENLKDSM LVDFIVGTKDNAIPRLGKVKLAIKNTNGIDELITSLKEKYSNIEGELKIIYNEIETPSEA QSIESTNKFAKYLLSLPTGVNSFTDETKTFVASSSNLAIVTKKDNGKYEVWNSMRFNKGD LMTEFKNKFNLISEEYNVEYNYSNYYPEWEYKEDSNLRALTMKLYKEMYGKEMTIDITHG GLECGVFYIKYKNLDMISIGPDISGAHTPQETLSIPSTKRVYEFTLELLKNLK >gi|289656157|gb|ADCS01000033.1| GENE 3 1844 - 3058 1357 404 aa, chain - ## HITS:1 COG:BS_pepT KEGG:ns NR:ns ## COG: BS_pepT COG2195 # Protein_GI_number: 16080943 # Func_class: E Amino acid transport and metabolism # Function: Di- and tripeptidases # Organism: Bacillus subtilis # 2 404 3 409 410 462 56.0 1e-130 MKDIVERFLKYVSFETTSDDSSETCPSTENQLVLAKYLVEELTNIGMKEVTMDKNGYVYA TLPSNTNKNVPTVGFIAHMDTAPDLTGKNVNPKFVDYKGGDIKLNDEYVMTEKEFPFLKN LIGERLITTDGTTLLGADDKSGIAIIVSAMEYLIENPSIKHGTVKVGFTPDEEIGRGANL FDVKNFAADFAYTIDGGPVGELEYENFNAASVEITIKGKNVHPGSAKNIMLNSSLIGIEI NSLLPSAQRPEHTEGYEGFFLLDEFNGTVEETKMFYIIRDHDIELFNKKKELITNIVEFI NKKYGNVAIINISDSYFNMKEKIEPHMEIIELASKSMKDLNIEPIIQPIRGGTDGATLSY MGLPCPNLFAGGYNFHGRYEFIPVSSLTKGKDLVIKIIENLEAK >gi|289656157|gb|ADCS01000033.1| GENE 4 3114 - 4640 2200 508 aa, chain - ## HITS:1 COG:FN2106 KEGG:ns NR:ns ## COG: FN2106 COG1288 # Protein_GI_number: 19705396 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Fusobacterium nucleatum # 4 508 15 518 518 548 58.0 1e-156 MTETTKKKKKRAFPNAFTVLFIVLILAAILTFIVPAGLYQRLSYDGDSNVFEVIDQEGNV TEKPATEDTLKELNIAIGLEKFTGGDIRKPIAIPGTYKTIEQNPQGLTAFLKSPIEGVID TVDIIIFILIIGGNIGLLNKTGAFDAGIAALSKKTKGKEFILIIIVFSLVALGGTTFGMA EETIALYPILLPIFIASGYDAMVAIATIYMASSLGTMFSTVNPFATIIASTAAGINFKLG LPIRSVGLVLGSILTLIYIYRYAKKVQKNPSLSIISDQMPEIRQKFDLDNFDSNNAPEFT LKRKLILLIFGLGFPVMIWGDYSQGWWFTEMSVIFMVTAFLIMLLSNMTEGEAVNTFMNG AADLIQVALVCGVARAINIIMDNGSISDTMLFYASNLVNGMNGILFSIVQMILFTFLGIF IPSSSGLAVLSMPIFAPLADTVNLGRDVIVSAYTYGQGWMAFLTPTGLILPTLQMVGVTY DKWVKWVIPYMVLLAIFAATMLGVQTIM >gi|289656157|gb|ADCS01000033.1| GENE 5 4912 - 6111 1323 399 aa, chain + ## HITS:1 COG:CAC3590 KEGG:ns NR:ns ## COG: CAC3590 COG2081 # Protein_GI_number: 15896824 # Func_class: R General function prediction only # Function: Predicted flavoproteins # Organism: Clostridium acetobutylicum # 1 399 1 405 405 253 38.0 5e-67 MKVIIIGGGISGVFCAIELARRGNKVVILEKKDRILKKMLVTGNGRCNLTNMELSSDKYF EKKEFVSNAIEKFSNIDFINYLNTIGIYTTIENVNRVYPITLKAQSVVKELLDELYDLGV EIFCNNSVISIEKENKFVVKTNECSYESDKVVFAVGGSSTPNLGSDGKSYKVLEKLGHRI TKIMPALTQIKLNSKYLKHLSGVKVVGNVKLINGKNVVEEDFGEILFTDYGVSGPPILNI SRKVNFYKKGLKIKLSIINNVDDLSLMKNELYNRYYMLSHFDLDRWLSGIVDKKFIYYIT DILGMKKETSLNIIDSSEFERLINILLESEFEVLGNRGFENSQVSVGGVATDDIDEKSFE SKILDGLYVIGEVLDVDGMCGGYNIQWAVSSAMQAARSM >gi|289656157|gb|ADCS01000033.1| GENE 6 6165 - 7445 1441 426 aa, chain + ## HITS:1 COG:BH0774 KEGG:ns NR:ns ## COG: BH0774 COG4091 # Protein_GI_number: 15613337 # Func_class: E Amino acid transport and metabolism # Function: Predicted homoserine dehydrogenase # Organism: Bacillus halodurans # 8 424 11 430 439 347 44.0 3e-95 MFYLKKVLEEHGKISVGVVGAGIMGTSLVSQLEIIDNFMPQVQSSRKIESVLESFNKAGI LKEKIKITNELDEALRYIEQGYYIATTNNEIPAKFTDCVVDCTGDTEAGAQISLWAIESK TDIVTLNVEMDATIGAYLKILADEAGIIYTGSSGDEPGAIIELFEFLKTTGFDILVLGKG KNNKLNNYAIPDELCDEAISRGLNPRMLTSFVDGTNTMTELNAVCNATGFVPDTRGCHCF TTSPKEIAKDIDLKEYGGMLNSYGIVDFAMGIAPGVFAIVRAKSDVIKSEMKYLSMGDGP NFAIYRPYHLTSIEVPNSIIRAVVLRDSSIVSIGAPVAETIAIAKKDLKAGDFIDGIGGY SVFGQLEKAEIQKKENLLPIGLIVGNVRLRRNVKKGQALSYEDVILDENSVIVKLRREQD KKFILT >gi|289656157|gb|ADCS01000033.1| GENE 7 7504 - 7917 497 137 aa, chain + ## HITS:1 COG:AGc344 KEGG:ns NR:ns ## COG: AGc344 COG1959 # Protein_GI_number: 15887554 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 1 136 1 132 156 77 30.0 5e-15 MRITQETDYAFRICGYLAQNEGQVIGAPKIASEKKISERFTLRILRKLNLAGITTAKRGA AGGYLLNKPKEEITLYDIIVAVDGPIIVNKCIDSECGRVSDSPCGFVGCKFHNKLAEVQQ TIVDMFKDATLDKFMER >gi|289656157|gb|ADCS01000033.1| GENE 8 7960 - 8031 65 23 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MVEEHKIEHIDQLGAFRLVALRP >gi|289656157|gb|ADCS01000033.1| GENE 9 8127 - 11222 3386 1031 aa, chain + ## HITS:1 COG:CAC3038 KEGG:ns NR:ns ## COG: CAC3038 COG0060 # Protein_GI_number: 15896289 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Isoleucyl-tRNA synthetase # Organism: Clostridium acetobutylicum # 5 1029 4 1033 1035 984 46.0 0 MKVFKTLSKESVKEREESIAKYWEDIDLLHRSVETRAGNEPYIFFEGPPTANGRPGIHHV MARTLKDLTCRYKTMNGYQVKRKAGWDTHGLPVEIEVEKRLDLHNKQDIEKYGIADFNKM CKESVFEYEREWRTLTKRMAYLIDLDHPYITLENDYIESVWYILNKMFEDGLIYEGHKIL PYCPRCGTGLASHEVAQGYEEIKTETVIAKFKLANKDEYFLAWTTTPWTLPSNVALTVNA DVDYIKVKYEDVIYYVAKDLASKIFDKEYEILETMKGKELEFVEYEQLIPFLTTNKKAFF VTCADYVTTEDGTGIVHTAPAFGEDDYQTGRRYDLPVLNPVDEEGKFTETPWKGQFVMDA DHEVIHYLYDNDKLFKKQKFLHNYPHCWRCHTPLIYYAHPSWYIEVTKFKDKLIENNNDV NWFPEFVGEKRFGNWLENLNDWAISRSRYWGTPLPLWRCECGHVESVGSRKELVEKAVED IDETVELHRPYVDDIHLTCPHCGKSMTREKDVIDVWFDSGAMPFAQWHYPFEHKDDFNEL FPANFICEGIDQTRGWFYSLLAISTYMTGVTPYKNVLVNDLILDKFGKKMSKSKGNTVQP FELFDKYGADTVRWYLMYVSPPWAPTKFDEDGLREAESKFFRSLRNIYNFFSLYANTDEI DPREFKVSYENRDEIDKWLLSKYNNLLLNVKADMEVFELTRVVRNIQDFVIEDFSNWYIR RNRRRFWKTEIDDDKKAVYNTTYEVMLGITKVIAPFVPFIAEELFKSLTENESVHLEMYP LADESLIDTKLEEKMDLVRSLVALGRASREEVKIKVRQPLSKVIIDGKYKEIIGDLTDLI KEELNVKEVVFEEDLSVFMNYELKPNFKVAGSILGAKIKEFGNVLKSIEPKKFVSDLKNG AVNMVLNGEDTEILEDYVLITIKSKEGFDVMMENNLFVILDTELTKELVEEGYVREFISK IQQLRKSEDLDVLDNIVISYEADDEVVEAITNYTEFIKAETLAQDIKREGFEGESVDLNG HDSKIKIEKLN >gi|289656157|gb|ADCS01000033.1| GENE 10 11291 - 11443 161 50 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299143926|ref|ZP_07037006.1| ## NR: gi|299143926|ref|ZP_07037006.1| hypothetical protein HMPREF0629_00790 [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 50 1 50 50 81 100.0 2e-14 MLKDFKVIRKYTYLKTLTTSILNNYIDSIKLGIWNTEHMPCIKEKNILLK >gi|289656157|gb|ADCS01000033.1| GENE 11 11592 - 12824 1282 410 aa, chain - ## HITS:1 COG:BH2245 KEGG:ns NR:ns ## COG: BH2245 COG2309 # Protein_GI_number: 15614808 # Func_class: E Amino acid transport and metabolism # Function: Leucyl aminopeptidase (aminopeptidase T) # Organism: Bacillus halodurans # 2 408 3 408 410 387 47.0 1e-107 MSFKENLKKYANLIIREGLKIKKDDLLVIRGPVETYEFINLIAETAFEAGAKDVFVNYSD QNLAKIRYNNASIETLSDIPQYFIDEQNGYIEKKAKFLSITGDDPNLLSDVNPEKVKAAV KAKSIALKSFSEKMMNSECSWCVVGVAVPSWAKVVFPNLSEEEAVKKLWDTIFYTVRVTE DNPISAWETHSNNLKKWSDFLNEKQFEFLEYHSENGTDLKIRLPENHIFSGASEFNRYGE EFIANMPTEEVFSMPHRDGVNGIVYNTKPLNYNGNLIDDFYLKFKDGVVVDFDAKIGYET LKNMLDSDEGSRRLGEVALVPYHSPISNTKILFYNTLYDENASCHLALGKAYPICIKGGE SMSTEELIKNGANDSIIHVDFMIGDSTTNIVGISKSGERIQIFKDGNFVI >gi|289656157|gb|ADCS01000033.1| GENE 12 12907 - 13089 205 60 aa, chain - ## HITS:1 COG:CT287 KEGG:ns NR:ns ## COG: CT287 COG0482 # Protein_GI_number: 15605008 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain # Organism: Chlamydia trachomatis # 3 60 293 351 358 77 57.0 7e-15 EFPLKCTGKIRYRAKDENMTVYLENDELKVIFENPLKGVTPGQVLVFYQGDICLGSGIIK Prediction of potential genes in microbial genomes Time: Fri May 27 07:38:24 2011 Seq name: gi|289656156|gb|ADCS01000034.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.34, whole genome shotgun sequence Length of sequence - 9627 bp Number of predicted genes - 12, with homology - 12 Number of transcription units - 6, operones - 4 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 27 - 78 -0.2 1 1 Tu 1 . - CDS 114 - 1181 1299 ## COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain - Prom 1248 - 1307 10.9 + Prom 1153 - 1212 7.2 2 2 Op 1 . + CDS 1367 - 1648 467 ## gi|299143929|ref|ZP_07037009.1| conserved hypothetical protein 3 2 Op 2 . + CDS 1655 - 3730 2114 ## COG2217 Cation transport ATPase + Prom 3744 - 3803 12.5 4 3 Op 1 . + CDS 3835 - 4896 1078 ## COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis 5 3 Op 2 . + CDS 4897 - 5409 436 ## gi|299143932|ref|ZP_07037012.1| hypothetical protein HMPREF0629_00796 6 3 Op 3 . + CDS 5423 - 5935 492 ## COG1525 Micrococcal nuclease (thermonuclease) homologs 7 3 Op 4 . + CDS 5940 - 6440 778 ## COG1267 Phosphatidylglycerophosphatase A and related proteins + Prom 6501 - 6560 8.9 8 4 Op 1 . + CDS 6615 - 6890 361 ## gi|299143935|ref|ZP_07037015.1| conserved hypothetical protein 9 4 Op 2 . + CDS 6915 - 8411 1828 ## COG4624 Iron only hydrogenase large subunit, C-terminal domain + Prom 8428 - 8487 6.7 10 5 Op 1 59/0.000 + CDS 8536 - 8964 557 ## PROTEIN SUPPORTED gi|220928243|ref|YP_002505152.1| ribosomal protein L13 11 5 Op 2 . + CDS 8981 - 9373 490 ## PROTEIN SUPPORTED gi|220928244|ref|YP_002505153.1| ribosomal protein S9 + Term 9391 - 9428 1.5 + Prom 9418 - 9477 14.0 12 6 Tu 1 . + CDS 9506 - 9626 156 ## gi|299144011|ref|ZP_07037091.1| aspartate--ammonia ligase Predicted protein(s) >gi|289656156|gb|ADCS01000034.1| GENE 1 114 - 1181 1299 355 aa, chain - ## HITS:1 COG:SA1449 KEGG:ns NR:ns ## COG: SA1449 COG0482 # Protein_GI_number: 15927201 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain # Organism: Staphylococcus aureus N315 # 7 354 8 358 372 421 57.0 1e-117 MTESKSVILGMSGGVDSSVCAALLKEQGYDVTAVFMKNWDEEDDDGVCTATEDYLDVIRV CSELGIKYYTVNFEKEYKDRVFSYFLSEYEKGRTPNPDVMCNTEIKFKAFLEFAMKFNSD YIAMGHYARTLKKDGKTYLLRGLDENKDQSYFLSRVPEAALSKTLFPIGNMKKEQVRELA QKYNLATAKKKDSTGICFIGERNFNNFLDKFLFTKEGDIYSVDGQYLGKHSGLMHYTIGQ RRGMGLGGMGSGEPFFVADKDLKNNRLIVAQGLKHPALYKKETICENAFWITDTPKFPLK CTGKIRYRAKDENMTVYLENDELKVIFENPLKGVTPGQVLVFYQGDICLGSGIIK >gi|289656156|gb|ADCS01000034.1| GENE 2 1367 - 1648 467 93 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299143929|ref|ZP_07037009.1| ## NR: gi|299143929|ref|ZP_07037009.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 93 1 93 93 109 100.0 7e-23 MKKKILNFALGMVTATVGPKILKSKLAKKVAVEAVVQGMKAKDYIDKTVETIKENTDDII AEAKIIKAEEESKARETEFNEEDFVTEVKTEEA >gi|289656156|gb|ADCS01000034.1| GENE 3 1655 - 3730 2114 691 aa, chain + ## HITS:1 COG:SP2101 KEGG:ns NR:ns ## COG: SP2101 COG2217 # Protein_GI_number: 15901916 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Streptococcus pneumoniae TIGR4 # 1 679 1 675 687 419 35.0 1e-116 MKFTIEHKIKGRIRFKTPYKFSYEEVNILKYNLEAISGVKEAYIYKRTGSIRIDYEEYAF KDIYYLIRDTKLNQLKKSDVENHAFKPQERIELLDILRDAVVKRTIIKYLMPYQFRIAYS FIGAFPFIKKGIKSLVRRKLDVDVLDATAIGISLLSREYPSVNSIVFLLKLGQRLEEWVF ERSKANLKGALSLNVEGVWIKRDEQIEKISLSSIKVGDEVLVEMGNIIPVDGIVIDGIGM VNQSSFTGEAEPVEKFKDSFVFAGTVLEEGRLLIKTTKAQDDTKLNEIIRLISESEENKA QSQKNAERKADSLVKYTFLGSIITYALTRNFAKAKAFLMVDFSCALRLAIPISVMSAMRD ASDKKALVKGGKFLEKLAMSDTIVFDKTGTLTNAQPKVVDLITFGEFSKDECLKYAACLE EHFPHSIANAVVRYAEDRNIIHREMHTSPEYIVAHGIASTVDGKRILIGSEHFIFEDEKI EYNHEAIIEIEKLKSNYSLLYLAYSGKLEAVICIEDPIRDEAKTCIEKLRNTGFKNIVML TGDSENSAFHVADELNLDYYKSQVLPDDKSHYIREQKKLGRTVVMIGDGINDSVALSEAD VGISMFKGADIAREVADISINSDSLYILNDMVSLSRAMDRRIKNNYISIVGINSILIILG VFGIITNTTSSLLHNTSTVIGSMFNMRKYKI >gi|289656156|gb|ADCS01000034.1| GENE 4 3835 - 4896 1078 353 aa, chain + ## HITS:1 COG:SPy1138 KEGG:ns NR:ns ## COG: SPy1138 COG1477 # Protein_GI_number: 15675115 # Func_class: H Coenzyme transport and metabolism # Function: Membrane-associated lipoprotein involved in thiamine biosynthesis # Organism: Streptococcus pyogenes M1 GAS # 49 329 21 284 312 145 30.0 1e-34 MKKTLVVLLILFLTCGCTKEIRNYEKYDIQFFDAFDTVTSMIIYEESEEKANEILSKMKD KFFEYHRIFDRYNNYKGINNLKTINDNAGIRPVKVSDELFFLIKKTIEYNKDVSDKICLT IGPVVDYWSKYNELYNSGATEDEVINEMGLPIPTHEKLDEFRNLINDEDIILNDVDKSVF LKKKGMILDLGAVAKGYATELVCNYAVDELGVKSGIVSAGGNVKIMGKPVDKPAFKVGIQ NPNLESSQLYLSILTLNDTSVVTSGDYQRYFFYNKKRYCHIINAQSLEPADEYKSVTVIS KDSFFCDYMSTTLFLSSYEEGLELCEKFDVDAVWKFKDGTIKATKGAEKVMGD >gi|289656156|gb|ADCS01000034.1| GENE 5 4897 - 5409 436 170 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299143932|ref|ZP_07037012.1| ## NR: gi|299143932|ref|ZP_07037012.1| hypothetical protein HMPREF0629_00796 [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 170 1 170 170 237 100.0 2e-61 MRNNTRGLIFHLIIIAVMFIFTAIVNLSEMLKKVLYGNIAFRIILCIIPILLYYNLAKGM SKKKSKRLDFLSGNIIVLISVILFIPPFLILKSKMFSLGIAESIWKFPLDLFLMPELFIY QLLKIDYNIVSIIIASLIPGFIYGISIKKSRIKIMRKIRMKQLRSKRYEK >gi|289656156|gb|ADCS01000034.1| GENE 6 5423 - 5935 492 170 aa, chain + ## HITS:1 COG:SA1160 KEGG:ns NR:ns ## COG: SA1160 COG1525 # Protein_GI_number: 15926905 # Func_class: L Replication, recombination and repair # Function: Micrococcal nuclease (thermonuclease) homologs # Organism: Staphylococcus aureus N315 # 28 158 51 177 177 75 35.0 5e-14 MLVLFLILFFQKNLLSVKIDDNVEIAVIKTVIDGDTVILENGDKIRIIGINTPEIGKKEE LYGIEAKEFAEKILLNKKIYLEKDKKDFDKYGRKLRYIWLEIPEKITKGTIEEYNFSAIQ LKNGFARTYTFKPNVKYLDYFKKIQKNAIKNKEGMWKEDIAKITRGNSLR >gi|289656156|gb|ADCS01000034.1| GENE 7 5940 - 6440 778 166 aa, chain + ## HITS:1 COG:BS_ypjQ KEGG:ns NR:ns ## COG: BS_ypjQ COG1267 # Protein_GI_number: 16079242 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylglycerophosphatase A and related proteins # Organism: Bacillus subtilis # 1 161 1 158 177 169 60.0 2e-42 MYNYDQKQLFDEAVKALNRAGIKIRDIAEIVYELQSKYAKDLTIEYCEKNVIAVLEKREV IHAILTGLAIDDLAQKKLLPEPLQTIIEKDEGLYGIDEVLPLGIVNVYGTIGLTNFGYLD KAKVGIIKDLDGRKNTTGQIATFADDIVAAVAAASASRIAHRNANK >gi|289656156|gb|ADCS01000034.1| GENE 8 6615 - 6890 361 91 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299143935|ref|ZP_07037015.1| ## NR: gi|299143935|ref|ZP_07037015.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 91 1 91 91 166 100.0 5e-40 MKVTICMGSRCTLMGANAIYDAVDFLKDNICTPESDYCSAENLEIELSHCMNYCKNAEHG NLAPIVIVDDEIIYKATAQEVSAKIIDKLKL >gi|289656156|gb|ADCS01000034.1| GENE 9 6915 - 8411 1828 498 aa, chain + ## HITS:1 COG:CAC3230 KEGG:ns NR:ns ## COG: CAC3230 COG4624 # Protein_GI_number: 15896476 # Func_class: R General function prediction only # Function: Iron only hydrogenase large subunit, C-terminal domain # Organism: Clostridium acetobutylicum # 152 492 79 420 450 176 35.0 8e-44 MKESFGSIVDIRRKVFAEVARIAYEDCDISELENSSYRIVPGEVAKYREDIFRERAVADE RLRLAMGMGVREISVYKKVTDGFDKIDIDTNAYEKPLINVIKFACEACPTKTYYVTDNCR KCMAHPCTNVCPVNAVTIERNRAHIDTTKCIKCGRCKETCPYNAIVMYDRPCAAACGVNA IGSDEYGRAEIDHDECVACGRCIASCPFGAIADKTQIFQLIKAIKSGKKVYGAIAPSFIG QFGAKTTPMQVIEAIKKLGFEDVIEVSLGADITTLNEAKEYLKRVPNEIPFMGTSCCYSW ALMIKNKFPDLYEQVSDSGSPMRYTAEYINRLDPNSVVCFIGPCTSKKLEALDTKVKSYV DFVITFEELMGMFVAKNIEPSEIEISKEKEEASALGRGYPIAGGVAAAVKEVAQQLEPNR EIQIEGANSLDECIKMLKLAKAGKLNGCLLEGMACPGGCIAGVGTIASMTRVKRNIEQFK KNSQIKTPLENELILKEK >gi|289656156|gb|ADCS01000034.1| GENE 10 8536 - 8964 557 142 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|220928243|ref|YP_002505152.1| ribosomal protein L13 [Clostridium cellulolyticum H10] # 1 141 1 141 144 219 73 8e-57 MKTYMAKANEVDRKWYIIDAEDKVLGRLATEVANILRGKNKPIYTPHVDTGDYVIIINAD KVRLTGNKWEQKIHAYHTGYPGGRKEVVYNQLREKHPERVIEYAVKGMLPKNRLGRKMYT KLKVYAGAEHPHEAQKPEVYEF >gi|289656156|gb|ADCS01000034.1| GENE 11 8981 - 9373 490 130 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|220928244|ref|YP_002505153.1| ribosomal protein S9 [Clostridium cellulolyticum H10] # 1 130 1 130 130 193 73 5e-49 MDKSQYRGTGRRKTSIAQVRLLPGNGNFTINGRDIENYFDYETLRIVAKSPLTLTETLSQ FDVIVKVIGGGYTGQAGAIRQGISRALLEVDPEHRVILKKAGFLTRDPRMKERKKYGLKK ARRAPQFSKR >gi|289656156|gb|ADCS01000034.1| GENE 12 9506 - 9626 156 40 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299144011|ref|ZP_07037091.1| ## NR: gi|299144011|ref|ZP_07037091.1| aspartate--ammonia ligase [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 40 254 293 332 75 95.0 1e-12 MNENSLKNQLEESNKTERMSMDYHKNIINKKLPYTIGGGI Prediction of potential genes in microbial genomes Time: Fri May 27 07:38:50 2011 Seq name: gi|289656155|gb|ADCS01000035.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.35, whole genome shotgun sequence Length of sequence - 11187 bp Number of predicted genes - 14, with homology - 14 Number of transcription units - 6, operones - 4 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 140 172 ## PROTEIN SUPPORTED gi|227521596|ref|ZP_03951645.1| 30S ribosomal protein S9 + Term 158 - 195 1.5 + Prom 185 - 244 14.0 2 2 Tu 1 . + CDS 273 - 503 263 ## gi|299143940|ref|ZP_07037020.1| hypothetical protein HMPREF0629_00804 + Term 612 - 662 8.2 + Prom 594 - 653 7.8 3 3 Op 1 4/0.000 + CDS 790 - 1326 810 ## COG1396 Predicted transcriptional regulators 4 3 Op 2 30/0.000 + CDS 1338 - 2378 1170 ## COG3842 ABC-type spermidine/putrescine transport systems, ATPase components 5 3 Op 3 36/0.000 + CDS 2375 - 3211 869 ## COG1176 ABC-type spermidine/putrescine transport system, permease component I 6 3 Op 4 25/0.000 + CDS 3205 - 3984 791 ## COG1177 ABC-type spermidine/putrescine transport system, permease component II 7 3 Op 5 . + CDS 3995 - 5059 1199 ## COG0687 Spermidine/putrescine-binding periplasmic protein + Prom 5061 - 5120 2.4 8 4 Op 1 . + CDS 5165 - 5500 484 ## Amico_0798 hypothetical protein 9 4 Op 2 . + CDS 5501 - 6679 1173 ## COG0475 Kef-type K+ transport systems, membrane components + Term 6684 - 6725 4.2 + Prom 6700 - 6759 5.5 10 5 Op 1 . + CDS 6779 - 7348 876 ## COG2316 Predicted hydrolase (HD superfamily) 11 5 Op 2 40/0.000 + CDS 7422 - 8093 742 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 12 5 Op 3 . + CDS 8077 - 9525 1281 ## COG0642 Signal transduction histidine kinase + Term 9629 - 9689 7.5 + Prom 9661 - 9720 16.7 13 6 Op 1 29/0.000 + CDS 9765 - 10196 501 ## COG2001 Uncharacterized protein conserved in bacteria 14 6 Op 2 . + CDS 10197 - 11135 994 ## COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis Predicted protein(s) >gi|289656155|gb|ADCS01000035.1| GENE 1 3 - 140 172 45 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227521596|ref|ZP_03951645.1| 30S ribosomal protein S9 [Lactobacillus gasseri JV-V03] # 2 45 88 131 131 70 81 4e-12 ALLEVDPEHRVILKKAGFLTRDPRMKERKKYGLKKARRAPQFSKR >gi|289656155|gb|ADCS01000035.1| GENE 2 273 - 503 263 76 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299143940|ref|ZP_07037020.1| ## NR: gi|299143940|ref|ZP_07037020.1| hypothetical protein HMPREF0629_00804 [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 76 6 81 81 130 100.0 2e-29 MNENKDNKNEKNIRINGKFLKYFGPVFYILGLAAIIGSYQKKDIFLAIVGIFLIFWTKRY RKPYIKALEELENKKE >gi|289656155|gb|ADCS01000035.1| GENE 3 790 - 1326 810 178 aa, chain + ## HITS:1 COG:CAC0841 KEGG:ns NR:ns ## COG: CAC0841 COG1396 # Protein_GI_number: 15894128 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Clostridium acetobutylicum # 1 178 1 179 179 176 52.0 2e-44 MDIGNKLKNLRVKQALTQEELADRSELTKGFISQVERNLTSPSVATLIDILEALGTTPLE FFEDDVEEKIVFKKEDYFEIVKDDGYKITWIVPNAQKNEMEPIIIELEKNSSTKLLDPFE GEIMGYVLEGRVELNYGDKKFDIKKNETFYFTANKVSYLENKNAKVARVMYISSPPNF >gi|289656155|gb|ADCS01000035.1| GENE 4 1338 - 2378 1170 346 aa, chain + ## HITS:1 COG:CAC0840 KEGG:ns NR:ns ## COG: CAC0840 COG3842 # Protein_GI_number: 15894127 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport systems, ATPase components # Organism: Clostridium acetobutylicum # 2 342 3 344 352 396 58.0 1e-110 MENCVIDLVNINKTFEEDVILSDFNLSVKKNEFLTLLGPSGCGKTTTLRIIGGFETPDSG KVIFEGKDITELEPYERNINTVFQKYALFPHLNVSQNIAFGLKIKKMGASEIASKVKEVL KIVNLKNFENRSINSLSGGQQQRVAIARALVNEPKVILLDEPLGALDLKLRQGMQIELKK IQKSVETTFIYVTHDQEEALSMSDTIVVMNNGKIQQIGTPIDIYNEPKNAFVADFIGESN IINGIMREDYSVEFLGHLFKCVDKGFDKDEEVEIVIRPEDVDLVNGDGMLSGVVKSEIFR GVHYEMEVDVNGFNMLVQSTINRPVNSVVGINIDPDLIHVMKAGGK >gi|289656155|gb|ADCS01000035.1| GENE 5 2375 - 3211 869 278 aa, chain + ## HITS:1 COG:CAC0839 KEGG:ns NR:ns ## COG: CAC0839 COG1176 # Protein_GI_number: 15894126 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component I # Organism: Clostridium acetobutylicum # 6 278 11 277 277 251 52.0 1e-66 MKKYSYVYALWALIFIVFPIVLILAYSLNGSRGMGLSDFKFSFENFSRFFEPLYLKILWT SLIVAFFSTVICLLVGYPVAYIISRMSEKVRGNLILLFIIPMWMNFLLRTYAWLTLLGNN GLINKFLSVLGFAPLNLMYNMRAVMLGMVYNFLPFMVLPIYTVLLKIDKNLIDAAKDLGA NNLKVFLKVTLPLSLSGVYTGITMVFIPAISTFVISNLLGGNRFYLIGNLIEQQFTFTGD WAFGSAISIILIIIMILFLVGSNIISKGKNREGGGAIW >gi|289656155|gb|ADCS01000035.1| GENE 6 3205 - 3984 791 259 aa, chain + ## HITS:1 COG:CAC0838 KEGG:ns NR:ns ## COG: CAC0838 COG1177 # Protein_GI_number: 15894125 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component II # Organism: Clostridium acetobutylicum # 1 252 1 252 260 264 57.0 1e-70 MVRKILDKLYLILVFIFLYAPIAVLMVFSFNDSKLRGSWAGFTLRWYRALLEDSTILRSL YITLIVAVIATLISTVLGTFAAIGIHELKGHRKEIILDVNYLPVLNPDIVTAVALMGLYG FLGLNFGMLTMTLSHIVFCTPYVILSVLPKLKQMDKNTVEAALDLGATPEYAMRHVVIPQ IKPGIITGALMAFTLSIDDFVVSYFTTGHGVPNLSITIYTMARKGINPAINAMSTIMFIS LLVLLIIINKRNSKQIINK >gi|289656155|gb|ADCS01000035.1| GENE 7 3995 - 5059 1199 354 aa, chain + ## HITS:1 COG:CAC0837 KEGG:ns NR:ns ## COG: CAC0837 COG0687 # Protein_GI_number: 15894124 # Func_class: E Amino acid transport and metabolism # Function: Spermidine/putrescine-binding periplasmic protein # Organism: Clostridium acetobutylicum # 3 348 5 352 354 291 44.0 1e-78 MKKNKILLIGLVFIIAMLLSSCGGSSSSTATINVYNAGEYMDPSTIKEFEKETGIRVVYD TFASNEDMYIKATQSKDAYDILVPSDYMIERLIKEDIIQKLDFNNIPNYSGISSALKNKE FDPNNEYSVPYFAGTVGIIYNTEMVSEDINSWNALWDAKYKNQIIMYNSQRDSIAIALKK LGYSMNSIDKTQLEEAKEILIQQKPLVYAYLTDDGRDVLVQGDAAMGVMYSGDAALMMEN NSSLKYVIPKEGSNIWIDSFVIPKNAKNKEAAEKFIDFMCRPEIAAKNAEYCVGYTSPVD AAKDLLPEKLKNSEVAYPDYSKLPELESYKDLGENVSLYDKIWTEVSATMNEKL >gi|289656155|gb|ADCS01000035.1| GENE 8 5165 - 5500 484 111 aa, chain + ## HITS:1 COG:no KEGG:Amico_0798 NR:ns ## KEGG: Amico_0798 # Name: not_defined # Def: hypothetical protein # Organism: A.colombiense # Pathway: not_defined # 1 109 1 110 116 86 45.0 4e-16 MQVLFIVINHEQHFNDILEEFKNNDIRGGTIIDSEGMAQSLAYIDPSFSTSYLKVMLNQG RPYNKTIFLLLNDEKLEVAKECVRRAVGNLNKENVGIMFTFEVTSFEGLTK >gi|289656155|gb|ADCS01000035.1| GENE 9 5501 - 6679 1173 392 aa, chain + ## HITS:1 COG:CAC0444 KEGG:ns NR:ns ## COG: CAC0444 COG0475 # Protein_GI_number: 15893735 # Func_class: P Inorganic ion transport and metabolism # Function: Kef-type K+ transport systems, membrane components # Organism: Clostridium acetobutylicum # 1 341 1 340 393 67 27.0 6e-11 MDKIYYISVLLIAGLVFSKILGKFKFPDVTGFLIGGIIIGPSVLGLIPKEALSSLDVVSE VALAFIAFSIGDEMKISAIKKLGSGILLIVLLEGIFAFIAVTISTLFIFKESFAFSLTLG SIACATAPAATLMVIKQYNAKGDLVDVLIPVVALDDVLCIICFGIASSITISLISHSALS IGVMIYKPIKEIILALLLGLVSGTGFSFIIKKAKSDSETTIISVASIFMVTSIALYLKLS SLLTLMLMGVVSSNIGKSNRRYSALISSIAPPVTVCFFVLSGAELDFANLKTVGLMGASY IITRVIGKMLGAYSASKIAKFPKSVQKYLGLTLVPQAGVAIGLSLIASRIIPNPHGAMIR SIVLSATIVYELIGPLLAKIALDKAGCIKENS >gi|289656155|gb|ADCS01000035.1| GENE 10 6779 - 7348 876 189 aa, chain + ## HITS:1 COG:DR2421 KEGG:ns NR:ns ## COG: DR2421 COG2316 # Protein_GI_number: 15807410 # Func_class: R General function prediction only # Function: Predicted hydrolase (HD superfamily) # Organism: Deinococcus radiodurans # 5 176 32 202 205 127 38.0 1e-29 MIPTREQAYNLLIKYNESDALIKHGLQVEAAMIHFAKYFGEDEEKWGIVGLCHDLDYEKY PEEHCIKTREILESENWDEEYIRAIESHGWKMCVDVEPISLMEKTLYTIDELTGIINACC LLRPSKSVLDLNLKSLTKKFKDKKFAAGCDRDIILEGCEMLQIDKNIIFEETIKGLSERA EICGLKGEL >gi|289656155|gb|ADCS01000035.1| GENE 11 7422 - 8093 742 223 aa, chain + ## HITS:1 COG:CAC2435 KEGG:ns NR:ns ## COG: CAC2435 COG0745 # Protein_GI_number: 15895700 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Clostridium acetobutylicum # 4 223 5 224 224 207 46.0 2e-53 MFKILVVDDEEKIREVIKTYAEFEGHNVVEACDGLEAIEKCKEQEFDVIVMDIMMPRLDG FSSYKEIKKINDIPVLMLSARGEEYDKLFGFEIGIDDYVVKPFSPKELMARLNVIVKRRQ RIIENAVLEFQGLKIDLDGRVVYVDGEKVDMTPKEYDLLVFLATNENIALSRDKLLSKVW GYDFYGDDRTVDTHIKMLRNSIKDYRKFIVTVRGTGYKFDTKE >gi|289656155|gb|ADCS01000035.1| GENE 12 8077 - 9525 1281 482 aa, chain + ## HITS:1 COG:CAC2434 KEGG:ns NR:ns ## COG: CAC2434 COG0642 # Protein_GI_number: 15895699 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Clostridium acetobutylicum # 12 476 4 492 492 164 26.0 4e-40 MIRKNKNLKIDKKSIMFTFWKYFSAFAVVILAILWLFQIVFLNRFYESMKIHEVTKIGDY LRSQYMNKDFESKVLNYSQKKGLNIEVIDEEGTLIYPLTWLDVMINPKVIESDAFDEYFA GVKNGDHPYRVSITKLKHLETPTIVYAGYLGTTAGTNYYIMIKTSPQPVDSAIDVLKRLL IIVSILSLLLAFALSYFISRRLSKPLVEMSKTAKKLGSGDYSVNFKKGDYTEIDDLSNTL NYATREITKTMEVRKDLIANVSHDLKTPLTVIKSYGEMIRDISGNNEEMRNKHIDTIINE ADRLTMLVNDLLDISKIESNLEEIKFDCIDLKEVAEDVIDRFKIMFEKNNYKFNFIYSGN THIFANKKRIEQVIYNLINNAINYSKSEKDITIKVVGDLGVVRFDCIDKGIGIPKDKLDS IWERFYRVRNNHTRPTVGTGLGLYIVKNILELHKFKYGVISEEGVGSDFYFITKQCNTKV VS >gi|289656155|gb|ADCS01000035.1| GENE 13 9765 - 10196 501 143 aa, chain + ## HITS:1 COG:CAC2133 KEGG:ns NR:ns ## COG: CAC2133 COG2001 # Protein_GI_number: 15895402 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 1 143 1 142 142 181 60.0 6e-46 MLIGEYRHSLDNKGRVMIPSKLREDLGDNFVITKGLDKCLFVYPNEEWKRIENKLKELPM TNKAARSFIRIFFSGATNEDLDKQGRALIPQNLREHAEILKDVVIIGASTRAEIWSSENW DSYNDDEGLSYEEVAEKMAELGI >gi|289656155|gb|ADCS01000035.1| GENE 14 10197 - 11135 994 312 aa, chain + ## HITS:1 COG:CAC2132 KEGG:ns NR:ns ## COG: CAC2132 COG0275 # Protein_GI_number: 15895401 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis # Organism: Clostridium acetobutylicum # 1 312 1 310 312 338 57.0 7e-93 MKFNHKSVLFEDTINLLNIKENGIYVDGTIGGAGHSSQILKILNGTGLLIGIDQDLAALE KSKEVLGELGYNNYKLFNSNYKDFNVILDSLEIDKVDGFLLDLGVSSYQFDEGDRGFSYN YDAKLDMRMDTNAAFSAWDIVNGYSKEEIAKILWDYSEEKWAGRIADFIVKSRIKKPIDT TFELVEIIKNAIPAAARKKKGHPAKKTFQALRIETNNELDVLRNTLGRMIDRLNPGGRIA VISFHSLEDRIVKETFKYYYLDCICPEKAPVCNCGKKREIEIITRKPIVASEKELIENNR AHSAKLRVAEKL Prediction of potential genes in microbial genomes Time: Fri May 27 07:39:12 2011 Seq name: gi|289656154|gb|ADCS01000036.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.36, whole genome shotgun sequence Length of sequence - 46878 bp Number of predicted genes - 47, with homology - 47 Number of transcription units - 10, operones - 9 average op.length - 5.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 1 - 252 275 ## COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis 2 1 Op 2 . + CDS 262 - 669 481 ## gi|299143952|ref|ZP_07037032.1| putative septum formation initiator subfamily 3 1 Op 3 4/0.000 + CDS 678 - 2978 2529 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 4 1 Op 4 28/0.000 + CDS 3000 - 3959 1026 ## COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase 5 1 Op 5 25/0.000 + CDS 3969 - 5285 1603 ## COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase 6 1 Op 6 31/0.000 + CDS 5285 - 6394 905 ## COG0772 Bacterial cell division membrane protein 7 1 Op 7 . + CDS 6395 - 7486 1095 ## COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase 8 1 Op 8 . + CDS 7486 - 8307 747 ## Amet_2877 polypeptide-transport-associated domain-containing protein + Prom 8314 - 8373 10.8 9 2 Op 1 . + CDS 8423 - 9505 1486 ## COG0206 Cell division GTPase + Term 9510 - 9543 3.1 10 2 Op 2 . + CDS 9551 - 10009 549 ## COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains 11 2 Op 3 . + CDS 10014 - 11318 1294 ## COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase + Term 11371 - 11436 6.2 + Prom 11400 - 11459 10.5 12 3 Tu 1 . + CDS 11493 - 12971 1533 ## COG4690 Dipeptidase + Term 12978 - 13013 3.5 + Prom 13006 - 13065 10.3 13 4 Op 1 . + CDS 13110 - 14498 1465 ## COG0017 Aspartyl/asparaginyl-tRNA synthetases 14 4 Op 2 . + CDS 14508 - 16919 2468 ## COG0495 Leucyl-tRNA synthetase + Prom 16924 - 16983 3.1 15 5 Op 1 4/0.000 + CDS 17013 - 17888 1009 ## COG1561 Uncharacterized stress-induced protein 16 5 Op 2 4/0.000 + CDS 17908 - 18153 291 ## COG2052 Uncharacterized protein conserved in bacteria 17 5 Op 3 . + CDS 18159 - 18776 896 ## COG0194 Guanylate kinase 18 5 Op 4 . + CDS 18778 - 19143 461 ## gi|299143968|ref|ZP_07037048.1| DNA-directed RNA polymerase subunit omega 19 5 Op 5 5/0.000 + CDS 19136 - 20329 1258 ## COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase 20 5 Op 6 4/0.000 + CDS 20365 - 22749 2518 ## COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase 21 5 Op 7 26/0.000 + CDS 22758 - 23234 595 ## COG0242 N-formylmethionyl-tRNA deformylase 22 5 Op 8 1/0.333 + CDS 23234 - 24160 1027 ## COG0223 Methionyl-tRNA formyltransferase 23 5 Op 9 2/0.000 + CDS 24165 - 24860 867 ## COG2738 Predicted Zn-dependent protease 24 5 Op 10 4/0.000 + CDS 24863 - 26185 921 ## COG0144 tRNA and rRNA cytosine-C5-methylases 25 5 Op 11 5/0.000 + CDS 26185 - 27231 920 ## COG0820 Predicted Fe-S-cluster redox enzyme 26 5 Op 12 17/0.000 + CDS 27212 - 27928 901 ## COG0631 Serine/threonine protein phosphatase 27 5 Op 13 7/0.000 + CDS 27937 - 29901 2117 ## COG0515 Serine/threonine protein kinase 28 5 Op 14 10/0.000 + CDS 29910 - 30770 677 ## COG1162 Predicted GTPases 29 5 Op 15 6/0.000 + CDS 30767 - 31414 773 ## COG0036 Pentose-5-phosphate-3-epimerase 30 5 Op 16 . + CDS 31411 - 32040 646 ## COG1564 Thiamine pyrophosphokinase 31 6 Op 1 40/0.000 - CDS 32041 - 33348 779 ## COG0642 Signal transduction histidine kinase 32 6 Op 2 . - CDS 33345 - 34037 719 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 34057 - 34116 8.7 + Prom 34047 - 34106 11.8 33 7 Op 1 . + CDS 34171 - 35076 257 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 34 7 Op 2 . + CDS 35154 - 35858 354 ## FMG_1407 hypothetical protein 35 7 Op 3 . + CDS 35863 - 36588 315 ## COG4200 Uncharacterized protein conserved in bacteria 36 7 Op 4 . + CDS 36657 - 37211 522 ## Thit_0515 hypothetical protein 37 7 Op 5 7/0.000 + CDS 37208 - 38050 861 ## COG1624 Uncharacterized conserved protein 38 7 Op 6 . + CDS 38022 - 39263 1552 ## COG4856 Uncharacterized protein conserved in bacteria 39 7 Op 7 . + CDS 39332 - 40783 1485 ## COG0516 IMP dehydrogenase/GMP reductase + Term 40800 - 40839 4.1 + Prom 40807 - 40866 7.8 40 8 Op 1 40/0.000 + CDS 40929 - 41621 882 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 41 8 Op 2 . + CDS 41623 - 43041 1331 ## COG0642 Signal transduction histidine kinase 42 8 Op 3 . + CDS 43034 - 44461 1464 ## Ccel_2248 hypothetical protein 43 8 Op 4 . + CDS 44471 - 44779 351 ## gi|299143991|ref|ZP_07037071.1| conserved hypothetical protein 44 9 Op 1 . - CDS 44786 - 45031 267 ## COG2827 Predicted endonuclease containing a URI domain 45 9 Op 2 . - CDS 45031 - 45642 522 ## COG2137 Uncharacterized protein conserved in bacteria - Prom 45791 - 45850 11.7 + Prom 45452 - 45511 15.0 46 10 Op 1 1/0.333 + CDS 45753 - 46190 527 ## COG1716 FOG: FHA domain 47 10 Op 2 . + CDS 46147 - 46876 483 ## COG0772 Bacterial cell division membrane protein Predicted protein(s) >gi|289656154|gb|ADCS01000036.1| GENE 1 1 - 252 275 83 aa, chain + ## HITS:1 COG:CAC2132 KEGG:ns NR:ns ## COG: CAC2132 COG0275 # Protein_GI_number: 15895401 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis # Organism: Clostridium acetobutylicum # 1 83 228 310 312 93 57.0 1e-19 IDRLNPGGRIAVISFHSLEDRIVKETFKYYYLDCICPEKAPVCNCGKKREIEIITRKPIV ASEKELIENNRAHSAKLRVAEKL >gi|289656154|gb|ADCS01000036.1| GENE 2 262 - 669 481 135 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299143952|ref|ZP_07037032.1| ## NR: gi|299143952|ref|ZP_07037032.1| putative septum formation initiator subfamily [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 135 1 135 135 188 100.0 1e-46 MFKVKNDFKIQKNKIKKINRASKRPLYITLIIVMMVVCASTLTYAQLSSLDKKIMIQQKE ISELKKTKMSLIGEVKGIKSSTEIQDEAMYKLGMIYPKENQIVYVDISKDQKQKDVNNNV FLSPIISVLKSFTKD >gi|289656154|gb|ADCS01000036.1| GENE 3 678 - 2978 2529 766 aa, chain + ## HITS:1 COG:CAC2130 KEGG:ns NR:ns ## COG: CAC2130 COG0768 # Protein_GI_number: 15895399 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Clostridium acetobutylicum # 23 751 11 729 729 313 30.0 6e-85 MNKRMKLTEPEKKNKVENNLSKTANKKVFFLLFFLGFLFIAIVLKLLYINVFQGEDLTRK ALNQLTKTELVRADRGIIYDRNKKELAVNVTKANVFYNMNFEKSESQKTEEFNIYKRAVL EEASEKIATVLEVSKEEILDIMVGDKIIKIASNISREKALELKDLKIPRLSIEDVARRFY PYDAIASHVIGFISDDGVGQYGLEAKYDDELSGIAGKNISIKNNSYTQIPLTDEENYAPK EGAYPVLTLDETIQQFAEEAALDARIKHNADMVSIIVQNTVTGEILAMANNRSYNANNPK APVGEEQEKIWPNLSKEEKAELWFENWTNFCVSSQYEPGSVMKVITAAAALEENTTSPLK IYYCPPVLPGTKIICNTKNIGNKTMEQAMAESCNITFVKIGRELGAEKLLKYIKAFGFGE KTGIDLPAEIKGQIPANANEIGDIRLATLSYGHGIAVTPIQLINSVSAIVNGGNLNTPKI VDRFEDKNGNVIKKFKTELKRKVISEETSNTMKRLMKKVVDDGTGRLARVPGYQIGGKTG TAYIPSKDGGYEDNYISSFVGVAPINDPKITVLVVMQRPRGDFYAATVVVPAAQYVLKNT LEYLNIPKTEKIDTSDNRNIVEVPDVTGLLLSDAGKKIVDVGLQFNANINNISNASIVMK QYPEAGAMVNLETIVDLSVNSNIEEDKVMPNLVGKTEKELKTILKDLNVEYNIKGTGEVT YQSVGPNSKINSNTFVVFTMSISPTDENIRESKNDENNKKNLNKEK >gi|289656154|gb|ADCS01000036.1| GENE 4 3000 - 3959 1026 319 aa, chain + ## HITS:1 COG:BS_mraY KEGG:ns NR:ns ## COG: BS_mraY COG0472 # Protein_GI_number: 16078583 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase # Organism: Bacillus subtilis # 1 313 1 316 324 269 51.0 6e-72 MQESRILISLILSMLISLMSGKIVIPELKKLKAGQSIREDGPQSHLVKGGTPTMGGVMFL ITILIMVILSKDKSLEIVMLLFSTFAFGLVGFIDDYIKVVKKRNLGFTAKQKLICQILVA LIILFYQYKTPELNTNIIIPILNLNINIGLLYIPFIVFVVVGTVNSVNLTDGLDGLSSGI TIICLGFFAVVAHKLGRTTVELFCILLIGALLGFLYYNKYPAKVFMGDTGSLALGGAVSV VAILLNLPLILPVAGGIYFIETLSVIIQVASFKLRGKRVFLMSPLHHHFEQKGWKETKVV VVFYAVELILCLISYKMLF >gi|289656154|gb|ADCS01000036.1| GENE 5 3969 - 5285 1603 438 aa, chain + ## HITS:1 COG:BS_murD KEGG:ns NR:ns ## COG: BS_murD COG0771 # Protein_GI_number: 16078584 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramoylalanine-D-glutamate ligase # Organism: Bacillus subtilis # 55 437 70 450 451 276 39.0 8e-74 MYEYKNILIFGLGVTGESALKCMSNFECNLYAYDENEDNLNKDFEIDFKIFNKKDIDKID LIIKSPGINPKNEILMLANEKNIKVVSDIEVAYGITKCKNLIAITGTNGKTTTTSLTYQI LNSDRKTYCVGNIGKGILDIALEAEEDDYIVIEASSFQLEYTYDFKPIVSVITNVTSDHL DWHGNISNYKNAKYKIFKNQNEDDYTIFNYRDQNLKSLSFDRDIYYFSLEDSGKLGTFVK EGGIYFRSKDSTEFIMSVNDIKIPGVHNVENVLASTAIAKSLGIKNEVIKKSISNFMGVE HRIEFVRELNGVKYYNDSKGTNPDSTIMAINAIEKNIILIAGGYDKKADFSEMLNIGLGK VKKLILLGETADILQKISKPLGYEIYMVNDLDKAVMLSNSIASSGDVVLLSPACASWDMY TSYEKRGEHFKKLVNELI >gi|289656154|gb|ADCS01000036.1| GENE 6 5285 - 6394 905 369 aa, chain + ## HITS:1 COG:BH2566 KEGG:ns NR:ns ## COG: BH2566 COG0772 # Protein_GI_number: 15615129 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Bacillus halodurans # 12 365 9 362 366 190 39.0 3e-48 MKKYKNKLKSMDFPLIIILILLVFFGLIAVTSASYPEGVKNFDGDGFYFAKRQLIFSILG FIGVIVVSKLPRKTIRNLSGIGFIVGIFLIFALWTPLGWGKYGQIRWIRIPSSSFKFQPS DILKITSIVYMAKLLDINKKNMGNSYTFYSLVLIMAISVVPIMLKDLSTAVVIGISLFSM YFVGGIKSHQFVTLLGIGGASIVPMIVLFPYRIKRMFSFFTDSGTLTKDKYQITQSLYAI AMGGFGGVGLFHSRQKYSNVPLAYNDFIFPIICEEFGIIGAIFLIFLFFMLIYRGYLIAY KAKNYYDKYVAVGITTYIGIQAIFNLGVGCGLFPVTGITLPFISYGGTSLMLTMISIGLL LRISRDVEE >gi|289656154|gb|ADCS01000036.1| GENE 7 6395 - 7486 1095 363 aa, chain + ## HITS:1 COG:lin2141 KEGG:ns NR:ns ## COG: lin2141 COG0707 # Protein_GI_number: 16801207 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase # Organism: Listeria innocua # 1 362 1 361 363 265 38.0 9e-71 MKYILSGGGTGGHIYPALAIANELRKRNRDNEILYVGKEGSLEEELVKTYGIDFEPIHIE GLPRKKINKQTFITMLTLFKGLRECNKIIKKFKPDVVIGTGGYVCAPIVLKAQQKKIKTV IQEQNAYPGKTNRLLAKKANLVSLNFEEAREYLNTDNIIITGNPVRDDFENIDRENARRE LGILDSEKFVLSFGGSGGQESTNEAVIDIIKSKKDINFKFMHITGKTHYNKFMENLNKNN ISENITILNYSYEIPKLLMASDLVIASSSAMTLAEVSAVGIASILIPKAYTAGNHQVFNA KSYENKGASKVILEENLNGDILYNNIVELISNDNLRNGMALNSKKIGNIEAVKLLVDKIE SLK >gi|289656154|gb|ADCS01000036.1| GENE 8 7486 - 8307 747 273 aa, chain + ## HITS:1 COG:no KEGG:Amet_2877 NR:ns ## KEGG: Amet_2877 # Name: not_defined # Def: polypeptide-transport-associated domain-containing protein # Organism: A.metalliredigens # Pathway: not_defined # 1 247 3 253 262 74 28.0 3e-12 MNNGNRKKKIIKRRKKRLLIRKIVSIIILFSIIIFFMLKLGVFNVRSINIKGASEAKESE IIKKSEFKVGENYFSVNKKDRIKNINNIPIIKTSKISFSLSRRVTISVYERKPILQIENY MDYYLLDDEFRIIGIKNEPLQNIVELTGIDEKDLKLGKFLYAKDDQTKNFIKKLFDEKEI FQNLKSVNISSNSIRCINKDNIEIKFGEPTNLDYKFKMLGQVLEDIRKTNKRATLIDMSK GDNIIVEIESDYSNGNDKNDKDNFDENLTESEN >gi|289656154|gb|ADCS01000036.1| GENE 9 8423 - 9505 1486 360 aa, chain + ## HITS:1 COG:CAC1693 KEGG:ns NR:ns ## COG: CAC1693 COG0206 # Protein_GI_number: 15894970 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division GTPase # Organism: Clostridium acetobutylicum # 1 321 1 321 373 375 66.0 1e-104 MLDFDMDHDDFAKIRVVGVGGGGNNAVNRMINAGVKGVEFIAFNTDRQALKNSLAESKIQ LGEKVTKGLGAGANPDVGEQSAEESRDEIRACLEGADMVFITAGMGGGTGTGAAPIIADV AKELGLLTVGVVTKPFAFEGIKRAKFAERGINALKDKVDTLVIIPNDRLLSISDKKTSFS KAFEMADEILKQGIQGISDLISVPNLINLDFADVKTIMYDKGIAHMGIGVASGDDRATEA AKLAINSPLLETSIQGAKSVLLNITAGNDLGIFEVNEAADLIRDCVDEDANIIFGAGIDE SLKDQIKITVIATEFDQYKEDKGKKFPGLDISGRSDSKDSVKNFEDGELKIPSFLRTKKN >gi|289656154|gb|ADCS01000036.1| GENE 10 9551 - 10009 549 152 aa, chain + ## HITS:1 COG:CAC1698 KEGG:ns NR:ns ## COG: CAC1698 COG1327 # Protein_GI_number: 15894975 # Func_class: K Transcription # Function: Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains # Organism: Clostridium acetobutylicum # 1 151 1 151 151 172 59.0 3e-43 MKCPYCGYSESKVVDSRPTDEGSTIRRRRECINCKGRFTTYEKIEETPIIVEKKDGNRQS FDRNKIVHGIIKSCEKRPVSIEKIEAAVDNIEKKIQNSLKKEITTTEIGEMVMQELKELD EVAYVRFASVYRQFKDVNSFFDELQDIISKKK >gi|289656154|gb|ADCS01000036.1| GENE 11 10014 - 11318 1294 434 aa, chain + ## HITS:1 COG:CAC0326 KEGG:ns NR:ns ## COG: CAC0326 COG2256 # Protein_GI_number: 15893618 # Func_class: L Replication, recombination and repair # Function: ATPase related to the helicase subunit of the Holliday junction resolvase # Organism: Clostridium acetobutylicum # 10 434 10 435 443 374 46.0 1e-103 MDLFTLNMQENLKTNAPLAERLRPKNLNEFFGQKHLVGEGRYLSRIIKSDRVSSMIFYGP PGVGKTTLARIIANTTKKRFVQISAVTSNIKELREVLNEAEEFLKYENKNTILFIDEIHR FNKTQQDALLPFVEKGIIILIGATTENPYFEVNKALVSRCQILTLEALCQEELRELIIKA LNDENGFGNLNIEIDDAAINFLINNSSGDGRNILNSLEIAILSTDMVDNKIKIDIDIIKD CLQSKNINYDKNGNEHYDTASAFIKSIRGSDPNAALFYLAKMIESGEEPKFIARRLIISA SEDISNADPMALVVAVAAFNAVNMVGFPEGRIILAQATTYLATAPKSNRAYLGINSAIND VKYGTNFYIPMYLRDKHSPDIKKEAIYKYPHDYENNYVEQQYLPSEFVDRIYYEPSNNGY EKKIKDFMAKLKDK >gi|289656154|gb|ADCS01000036.1| GENE 12 11493 - 12971 1533 492 aa, chain + ## HITS:1 COG:SPy2066 KEGG:ns NR:ns ## COG: SPy2066 COG4690 # Protein_GI_number: 15675831 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidase # Organism: Streptococcus pyogenes M1 GAS # 1 472 1 486 498 336 38.0 8e-92 MKKRMLSLLLALIMILSVGNSALACTGTYVGKDVSKNGSTLICRTEDIGGGHPKSFVVYP AADHKDGEMYEDQITGFKWPQAMHTYQYCAVPDSDGYDDDGIYDEVGYNEKGVAISATVS ADYREEIEKVDPLIDTGLREADITTLVLSRCSTAKEGVKLLGEIIDKEGAAECNVLMIAD HKEAWYMEIVSGHQYVAIKLPTDVCAVIPNCLWLDYVDVNDTENVIASKELISMPEKHNL IKKVNGKFSVRATYAPELQDYDRARVWGGQNFLAPSKKLSYESNYNLFFKPDKKVSLKDV MELQKYRYEGTKLDGNKPENKGVRVIGIERQVECHIIELKENFPAKVPGILWLAMGNAEH NVYVPYFPNLSKTPEAYAKKSSNFDDTQAYWVFRGLSTLAELNRDKYGKSIREYWSKYQD KLIEEQDARNKEFLVLYHQDPKRAVEYANEMAEKLGMQAFKDAKSMYSELFRYVAEDVAR TAKKPFVPSIAQ >gi|289656154|gb|ADCS01000036.1| GENE 13 13110 - 14498 1465 462 aa, chain + ## HITS:1 COG:CAC3260 KEGG:ns NR:ns ## COG: CAC3260 COG0017 # Protein_GI_number: 15896505 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Aspartyl/asparaginyl-tRNA synthetases # Organism: Clostridium acetobutylicum # 5 462 6 463 463 657 68.0 0 MRLTIREILENSQKFIDRDVKIEGWIKTSRSSKNFGFIELTDGSCFGSLQIVYDDKLQNF SEVEKYPISSSLLVEGKIVESPGAKQPIELHAVKIEAYCESDRDYPLQKKRHTMEYLRTI AHLRGRSNTFNAVFRVRSILAFAIHKFFQEKGFVYVNTPLITASDAEGAGEMFQVTTLDL KNIPLTEDGKVDFSNDFFGKSTNLTVSGQLEAESFALAFGNVYTFGPTFRAENSNTARHA AEFWMIEPELAFADLEENMRISEEMLKYIIKYVLDNAKDEMEFFNSFIDKGLFERLNNVV NSDFGRITYTEAIEVLKKSGREFKYPVEWGVDLQTEHERYLTEEVYKKPLFVINYPKEIK AFYMKENEDKKTVAAMDLLVPGVGEIIGGSQREDRLEVLEEKMKNIGMDMDTYKWYLDLR RYGSAQHSGFGLGFERAVMYVTGMSNIRDVIPFPRTVGSAEF >gi|289656154|gb|ADCS01000036.1| GENE 14 14508 - 16919 2468 803 aa, chain + ## HITS:1 COG:BH3281 KEGG:ns NR:ns ## COG: BH3281 COG0495 # Protein_GI_number: 15615843 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Leucyl-tRNA synthetase # Organism: Bacillus halodurans # 3 801 2 804 806 899 54.0 0 MNNYNPNEIEKKWQKFWDDNKTYVTKNEFDKEKFYALVEFPYPSGQGLHVGHPRPYTALD IVARKRRYEGYNVLYPMGWDAFGLPTENFAIKNKIHPAKVTKQNVNRFKKQLKSIGFSFD WSREVNTTDPKYYKWTQWIFLQLFKRGLAYKTEMPVNWCPSCKAGLANEEVVGGKCERCG HEVVRKVKSQWMLKITDYAQRLLDDLEEVDYIERVKTQQKNWIGRSEGAEIKFNIANSDD YLEVFTTRPDTIFGATYMVIAPEHPLIEKYIDRIKNLEAIETYKEECSKKSDFERTELST EKTGVVIEGLYAINPVTEEQIPIWISDYVLMSYGKGAIMAVPAHDTRDYEFAKKFDLNIV PVIDGGNVGQEAFIDTETGIMINSGFLNGKSVKDAIDSMLKWIEDKGIGHRKINFKLRDW VFSRQRYWGEPIPLIYCEKCGWVPVPEAELPVLLPDVENYEPTDNGESPLSKIDSWVNTT CPHCGGFAKRETDTMPQWAGSSWYFLRYTDPDNDMELASKEALKYWTAVDWYNGGMEHTT LHLLYSRFWHKFLYDIGVVPTKEPYKKRTSHGMILGNNGEKMSKSRGNVINPDDIIRDYG ADTLRTYEMFIGDFEKNAPWSDNGVKGCRRFLERVWNLQSILNNGEDYSKSLESSIHKAI KKVSHDYENLKANTAIAALMSLLNEFNENKSITKKDLKTYLILLNPVAPHITEELWEITN LGGYLNQARWPEYDEAKTIDDSIALPVQFNGKVRYTIEIPRDANIDVARQIAMQNEVYRN YTDGKNIVKEIYVPGKIYNIVVK >gi|289656154|gb|ADCS01000036.1| GENE 15 17013 - 17888 1009 291 aa, chain + ## HITS:1 COG:CAC1716 KEGG:ns NR:ns ## COG: CAC1716 COG1561 # Protein_GI_number: 15894993 # Func_class: S Function unknown # Function: Uncharacterized stress-induced protein # Organism: Clostridium acetobutylicum # 1 291 2 292 292 199 40.0 7e-51 MNSMTGYGSGIASNERFSIKVEMKSVNNRYCDISVRLPKILFALEERVKKSIKDSVNRGK IDVFINLEYINSTDVKIEVDTALAKQYYLALTELKNELNISDDISLRDIYYMQGVLVNKN NEEDINEYSKILDEALNEALTNFISMRNIEGEETKKFFIERISDIEKISAMIKERAPITL KENTEKLRETIESNVDIKNLDLPRLSTELAIMCDRLSIDEEITRVFLHLKQFNKIINLDG AIGRKLDFLVQELNREVNTIGSKSTDIDTLNCVVELKSEIEKIREQIQNIE >gi|289656154|gb|ADCS01000036.1| GENE 16 17908 - 18153 291 81 aa, chain + ## HITS:1 COG:BS_yloBa KEGG:ns NR:ns ## COG: BS_yloBa COG2052 # Protein_GI_number: 18677778 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 74 5 78 89 93 58.0 1e-19 MINIGFGNIINESRIIAVIDPDSAPIKRLISESRDKGLLVDSTYGRKTRSVIIMDTSQII LASIQPETIAARISEGKVKED >gi|289656154|gb|ADCS01000036.1| GENE 17 18159 - 18776 896 205 aa, chain + ## HITS:1 COG:CAC1718 KEGG:ns NR:ns ## COG: CAC1718 COG0194 # Protein_GI_number: 15894995 # Func_class: F Nucleotide transport and metabolism # Function: Guanylate kinase # Organism: Clostridium acetobutylicum # 4 205 5 202 209 201 52.0 1e-51 MSAGFLLVLSGPSGSGKGTVSQALMSRNNKISFSTSVTTRTPRPNEVNGENYFFTTIEEF EDMVKNDELLEYAFVHTNYYGTPKKFVFSEIEKGEIVLLEIDVQGALQVKEKYKEAVFIF LLPPTMDELKSRLIKRDTETEEEINTRFKNAFRELDFVGEYDYFVVNNTVEQAVIDIENI IEAEKLRVKRHKDIKKEVMKEKKGE >gi|289656154|gb|ADCS01000036.1| GENE 18 18778 - 19143 461 121 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299143968|ref|ZP_07037048.1| ## NR: gi|299143968|ref|ZP_07037048.1| DNA-directed RNA polymerase subunit omega [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 121 4 124 124 169 100.0 4e-41 MIIPSFNKIKNVTDSRYSLVVLVSKRARKIVDGSAPLVNTENEKPVSIAIEEIMDKSILF GEPMSDRAYNKKIEDEKVHKLEILKNSRMKKMKDEYEENSKIEDEINDEEVNFKESMSEN A >gi|289656154|gb|ADCS01000036.1| GENE 19 19136 - 20329 1258 397 aa, chain + ## HITS:1 COG:BH2510 KEGG:ns NR:ns ## COG: BH2510 COG0452 # Protein_GI_number: 15615073 # Func_class: H Coenzyme transport and metabolism # Function: Phosphopantothenoylcysteine synthetase/decarboxylase # Organism: Bacillus halodurans # 1 390 1 390 404 329 46.0 5e-90 MLKNKNILLGVTGGIAAYKAPSIVSNLRKQGANVKVVMTKAACEFVTPLTFQTMSNDIVH VDMFKQLSNMDVEHISLAKWADIIVVAPASANTIAKFANGICDNLLTTILLASRSKVMIV PAMNTFMLNSHANRENMKKLSDRGVMILDTQNGVLACNDVGDGKMLEPAEIIDEIDSALT EKDLEGKRFVITSGATIEPIDPVRYITNHSSGKMGYALAKQAKKRGADVTLISGSVSIEA PKVDNFVKVSTTQDMFNAVEKYFDKCDVLIKAAAPADYRPKKYSEEKIKKTAQKDLEYIE LVHNIDIAKHFGNSKKNQIVVGFAAESNNEINYGIGKLRSKNFDIIVVNNIKQAGAGFRT DTNIASIIDRDENVETLGLMTKTELANVILNKVRKLF >gi|289656154|gb|ADCS01000036.1| GENE 20 20365 - 22749 2518 794 aa, chain + ## HITS:1 COG:BS_priA KEGG:ns NR:ns ## COG: BS_priA COG1198 # Protein_GI_number: 16078634 # Func_class: L Replication, recombination and repair # Function: Primosomal protein N' (replication factor Y) - superfamily II helicase # Organism: Bacillus subtilis # 1 792 1 798 805 551 39.0 1e-156 MKYASVFIQNSVSKIDDLYLYKCPENLFIEIGMRVIVPFGRGNSTRIALVVKIHDNIEKV NYKLKTIINVIDYEPILEKDLIELGFWMSDRYLTTYSQSFSPIFPPGDVKKIKKIAKINE NIKLNDSQNEFIRLLEKNNYELDFLDGDEKLKNFLRVLIEKKVIEIDFKIDTIGGEKTQK YVKLSKNYLRKIGEKSLKITEKQSLIIKYLQEKIETSRANLLSDLKLSDAPLKSLVNKEI VELYDKFIERNPYKDKQKLESKILNDEQLKVLNGIFNSNKETDLIYGLTGSGKTEIYLKL AEEVIKAGGQVIVLVPEIGLTPQMIERFMGRFENKVSVLHSKLSTGERYDQWQKIKNGYV DVVVGARSAIFAPFKNLKLVIIDEEHDSSYRFHNALRYDTLEVAQKRMNILNGKVIIGSA TPSIDSYYNALSGKYGLFKLKHRAVLGAKLPTVQIVDMRKELLRGNVSIFSEQLRNLIEE KLEKKEQIILFLNRRGFSNFVSCRSCGHVIKCDNCDISMTYHKNTNSLRCHYCGSTKKMV DRCHECGSKFIKQFGVGTQKVEEEVQKLFPNARIIRMDRDTTVRKNSYDNIYESVKNKEV DILIGTQMLAKGLDFENVTLVGIIAADLSLYISDYKATETTFELLTQVSGRAGRSNKGGD VIIQTYEPDNYSIVYSKNADYERFYNKEIGYRKEFNYPPFIKLVNIHLYSEFENKLDFMA NEILNSFAGEIRGYKVEHTRIIKMPKIKNVFNRKITLKVDPNNLEELIEVIKRVLINSRL KLNKNNIFIEIEFI >gi|289656154|gb|ADCS01000036.1| GENE 21 22758 - 23234 595 158 aa, chain + ## HITS:1 COG:CAC1722 KEGG:ns NR:ns ## COG: CAC1722 COG0242 # Protein_GI_number: 15894999 # Func_class: J Translation, ribosomal structure and biogenesis # Function: N-formylmethionyl-tRNA deformylase # Organism: Clostridium acetobutylicum # 1 143 1 142 150 135 53.0 3e-32 MAYRVIRTDDDPVLRKISREVVKFDDRLKTLIEDMYETMDKAEGVGLAAPQVGVLRRVIT VDDRTEHRFALINPEIIFESGTQLGYEGCLSLPNKQGKVKRFNEIKVKYLDENGEKKEIE AKEYLARILQHEIDHLNGILYSDIAEEMYVINSEDEEI >gi|289656154|gb|ADCS01000036.1| GENE 22 23234 - 24160 1027 308 aa, chain + ## HITS:1 COG:CAC1723 KEGG:ns NR:ns ## COG: CAC1723 COG0223 # Protein_GI_number: 15895000 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA formyltransferase # Organism: Clostridium acetobutylicum # 1 306 2 309 310 216 43.0 3e-56 MNIIFMSTPEFGIDALDALNEKYNISAVITQVDKKRGRGKKLLSSPIKERALALGLEVYQ PEDINSEESVKYLKSKNADLFVVVAYGQILKEEVLYLPKYYSINIHASLLPKLRGAAPIN RAIINGESCTGISIMKMEKGLDTGDVAITDCIEIGKLSASELEKKLAKMGAKLIVEFIEK LKNKNVNFKKQDEELATYAEKIERETGHIDFKKMSVFEIDRLVRGLNDRMYASSVYKGER FKIVEVEISKDIQNKLPGEIIDSNKKLIISAIDGTVSILKLQFPGKKLMDIKSYLAGNSF KVGEILGV >gi|289656154|gb|ADCS01000036.1| GENE 23 24165 - 24860 867 231 aa, chain + ## HITS:1 COG:TM1511 KEGG:ns NR:ns ## COG: TM1511 COG2738 # Protein_GI_number: 15644259 # Func_class: R General function prediction only # Function: Predicted Zn-dependent protease # Organism: Thermotoga maritima # 17 230 12 230 230 186 47.0 3e-47 MFGYGYYGIGFQYMYYIIPGLLLAMFAQSKINSTYEKYRRIDSNTGLTGADVARLIMDRN NLRDVRIQMIGGKLSDNYDPENKVLNLSSDIYSGRSIAALGIAAHEVGHAIQHERGYIPL KIRAALVPAANIGSNLSMIFIMMGLFFSAFMIKLGIAMFAIAVLFQIVTLPVEFDASRRA QAELSNNILSVDALVGTKEVLSAAALTYVASTLIALGQLFRLLALFGKRRD >gi|289656154|gb|ADCS01000036.1| GENE 24 24863 - 26185 921 440 aa, chain + ## HITS:1 COG:CAC1725 KEGG:ns NR:ns ## COG: CAC1725 COG0144 # Protein_GI_number: 15895002 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA and rRNA cytosine-C5-methylases # Organism: Clostridium acetobutylicum # 1 438 1 439 441 261 38.0 3e-69 MKDIRKKALFIIDNVLYKGAFLNEELLILSKSKIDKRDYNLIVNITTGVVQNKLLLEHIV SKYSKIKIKKIHRTILTILQMGIYQIFFTSRIPDYSIINESVNLAKIFGNQGSAGFVNGL LRNILRDKENIEKSEFWLNDVKETDYAEYLSIYYSHPKFYVDLILEEKGKDFTKELLKCN NVQAPFTIRVNTLKCSVEDLAGKLKKRGFDTEKTKYSKNALIVKNPESILDSFLFKEGYF YIQDEASMLVSEFTKFNEKAKVLDLCSAPGGKSFNIAMLNRDASIISCDISNKKISLIRE NMERLGIKNIKILKNDATIYNKTFYNLFDNVIVDAPCSGLGLYRRKPEIKWNRKPEDIEK LTKIQMNIINNASKYVKIGGIITYSTCTITREENEDIINKFLDENKNFEIEKIENSDILK IYTNTHNMDGFSIAKIKRIN >gi|289656154|gb|ADCS01000036.1| GENE 25 26185 - 27231 920 348 aa, chain + ## HITS:1 COG:CAC1726 KEGG:ns NR:ns ## COG: CAC1726 COG0820 # Protein_GI_number: 15895003 # Func_class: R General function prediction only # Function: Predicted Fe-S-cluster redox enzyme # Organism: Clostridium acetobutylicum # 19 337 20 338 345 301 48.0 1e-81 MEINNLYLDEIENKVKFYGEKNFRAMQLYNFFHKQKRTDIENSNLPKSLITKILEYEKIQ TVSILEEYSSKLDETKKFLFKLEDKNIVEGVLMKYKHGYSQCISTQVGCRMGCVFCASTK EGLIRNLSAYEMLGQVYEVEKRFNINVSNIILMGSGEPFDNYDNVIRFLKLVHSKEGKNL SYRNITISTCGIVDKIYELSKENLPITLAISLHNTNNISRDNIMPINKKYNIEQIIQACK NYSNMTNSRITFEYTLIGGQNDTLENAQELKSLINGLKAHINLIPLNPIKEYNKKRPNQK EVEDFKKKLEALKLNVTIRRELGADIMASCGQLRRKYEGGDKNVCSCD >gi|289656154|gb|ADCS01000036.1| GENE 26 27212 - 27928 901 238 aa, chain + ## HITS:1 COG:CAC1727 KEGG:ns NR:ns ## COG: CAC1727 COG0631 # Protein_GI_number: 15895004 # Func_class: T Signal transduction mechanisms # Function: Serine/threonine protein phosphatase # Organism: Clostridium acetobutylicum # 6 238 27 260 269 150 40.0 1e-36 MFVAATDKGCIRDNNEDSYYIPGKIENIFILADGMGGHLAGETASQMAVQTIVDYFSEEN INSDEELERVIVNSVKMANEKIFNLSREDMKYRGMGTTLSMCYIYDGYLYYVNIGDSRIY EINCDEINQITTDDSFVNYLIQIGEITEQEAKEHPKKNVLTKALGTSETIEVTVNKLKIN KNTKYLLCSDGLTNMVDEKEILEIINKYEIEIAKDKLIKETLLNGGIDNVTLIIIDNK >gi|289656154|gb|ADCS01000036.1| GENE 27 27937 - 29901 2117 654 aa, chain + ## HITS:1 COG:BH2504_1 KEGG:ns NR:ns ## COG: BH2504_1 COG0515 # Protein_GI_number: 15615067 # Func_class: R General function prediction only; T Signal transduction mechanisms; K Transcription; L Replication, recombination and repair # Function: Serine/threonine protein kinase # Organism: Bacillus halodurans # 1 270 1 266 343 260 50.0 5e-69 MIGKVLGNRYEVLEKIGTGGMGDVYKAHCRKLDRIVAIKILKAEYNDDNNFIRKFKRESL AAASISHPNIVSIYDVGSEEIDSQKVHYIVMEYIDGKTLKEVINEEGRLNEKRALNYCVQ IAEALKVAHSKNIVHRDIKSQNIMVTKDDRVKVTDFGIARVADNSTVTATNAIMGSVHYF SPEQARGTKVDNRSDIYSLGIVLYEMLTGKLPFDAENPVSVALMQVQSNMPKPSSRYSDI SSMADSIVLKMTMKEPNDRYADVYSLIKDIKDIQFGRTTNFNYTNSSSRNTMPVNKSEIA ASRDKKVVRRNTPKPERVIEKEVKKKKKSSFTPVLLGILCALLLFGLLIFVVPKIMSGNN TDVDKVEKVSVINIVGLDEKEAEAKLKAIGLVMEQSGVEEREDKNNREILSQSPKEGEQV EKGTSVSVVVNIVEDSIKVPNLVNKTLEEAQRLAKDSGLNIIDIQMDYSDTVESDRIISQ EPQAESEVSKKQGISIRISKGAEDKSKEIPNIRGLTEAQAKATLEKVGFVVDVKYIKANN VDRGDVSRYEPEGVADKGSTITIYVSEGPKEDGDLNPSDGTSTQNSLSVDLPNDGQRHKV TVYRFTPNGGEYKIYDYMKSADEGTVLVPLDYAEHGDKFEIYVDDEKVRTEVID >gi|289656154|gb|ADCS01000036.1| GENE 28 29910 - 30770 677 286 aa, chain + ## HITS:1 COG:SPy0263 KEGG:ns NR:ns ## COG: SPy0263 COG1162 # Protein_GI_number: 15674443 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Streptococcus pyogenes M1 GAS # 1 286 1 283 290 218 40.0 1e-56 MKGKIIKLTGGFYYVNSESEVYETRARGNFRNNDIKPLVGDIVEFKYDENKLGYIEKVYP RKNKLLRPAVANVDQVLIVIPTKDPKYNLNLIDKMICFYENKVDILIAINKYDLDRDKAE ELMEIYRKAGFKTFLISYKYTFTIDLLREYLKQKTTALCGVSAAGKSTIASNILKKDILI GDVSEKTKRGKHTTRHTEIFTGDNNTYIFDTPGFSSFDLDINSEELQQFFREFKRNSGKC KFNNCKHINEPECNIKKMVENGLISKSRYDSYLEIYNELKEKERYF >gi|289656154|gb|ADCS01000036.1| GENE 29 30767 - 31414 773 215 aa, chain + ## HITS:1 COG:CAC1730 KEGG:ns NR:ns ## COG: CAC1730 COG0036 # Protein_GI_number: 15895007 # Func_class: G Carbohydrate transport and metabolism # Function: Pentose-5-phosphate-3-epimerase # Organism: Clostridium acetobutylicum # 2 215 4 213 216 213 52.0 3e-55 MISPSILSCDFTNVKKDFDAMNEAKADFVHIDIMDGNYVPNISFGPSIVSQFRKLTDIDF DVHLMINEPEKYIEDFVKAGANIITIHPDSTLHLNRTINLIKSFGIKAGIAINPAQELSI LDYTLEDIDLVLIMSVNPGFGGQSFIESSTRKVEDVKKIINNAKSKCLIEVDGGIKLNNA LKVYNAGADILVAGSAIFGSENPKKTIIKFKELLK >gi|289656154|gb|ADCS01000036.1| GENE 30 31411 - 32040 646 209 aa, chain + ## HITS:1 COG:CAC1731 KEGG:ns NR:ns ## COG: CAC1731 COG1564 # Protein_GI_number: 15895008 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine pyrophosphokinase # Organism: Clostridium acetobutylicum # 1 209 1 211 211 101 34.0 1e-21 MKGLLVSGGNKVNFPILERESKNSFIVCADGGIKNFVGTYLKPDLIVGDFDSIDDNGKKF VKEKNLEFKKYPCQKDFTDTEAALEILLEKNVDEIVILGATGTRLDHTVSNIFLLQKLFG KINAKLIDNNNEIYYFENGIYEFEKSWYKYISVIPISTCVEYSTEGLLYDTNHIIINSTS GIGVSNEILNQKCKINIYNGKGFIIKSND >gi|289656154|gb|ADCS01000036.1| GENE 31 32041 - 33348 779 435 aa, chain - ## HITS:1 COG:BS_yvrG KEGG:ns NR:ns ## COG: BS_yvrG COG0642 # Protein_GI_number: 16080374 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Bacillus subtilis # 68 417 166 555 573 88 25.0 2e-17 MNSIKYYLKSLLKFFIIIFLFFIASLFLFIFGVYYNYQKFNKSDIEPLSVYYMIEENGKL NLSDKNKEFLDKNNLWIMVISSNGKIKENYNLPKHLNRDYSIQDIIKFTRWYLDGYPVFT FVLDEGILVIGYPHGVYEKFPTNFYQYDLFANILKLIFIVFLFDISALFLVYIYSKKKII DEVYPIATSIKNLSENKSINLPENGNLIEIKQALNKTSKLMKNNSSQREFWIRGISHDLR TPLTKTIGYSYLLEKRIGKCEEIEIIKQNSELMQNIISGLNLTYTLENSIFEYGFENTDI KKLLREIIVDLINTSSTFFEIKFNPNDQEYKINCNKNLIERAIRNILLNSIIHNDNVIIT VSLNKIDDNVEIIIKDNGSISKQKITELNLKTENQDVHGLGILITKKIIVLHGGTINFYY NNPGLKTEIKLKKGL >gi|289656154|gb|ADCS01000036.1| GENE 32 33345 - 34037 719 230 aa, chain - ## HITS:1 COG:CAC0289 KEGG:ns NR:ns ## COG: CAC0289 COG0745 # Protein_GI_number: 15893581 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Clostridium acetobutylicum # 2 228 3 235 235 174 44.0 1e-43 MNIKNRKILIVDDDVVIVNLVKRILNECGFKNIKCAYNIADAIKLFDREKFDIAILDILL PDGLGFDLIKYFRKNNNIPVLFLSAISDIENQYKSFMLGGDDYIVKPFLPKELELRLIAI LNRSYGNDDNIVFLKNSKIDFEKALVIKSNKEIPLTAKEYEILKLLYENKNKIVTIDGIL NSIWGVDSFGYENSLMAHIRKIREKVELNPSSPKNLLTFKGLGYKLKVET >gi|289656154|gb|ADCS01000036.1| GENE 33 34171 - 35076 257 301 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 1 299 1 305 311 103 27 2e-21 MDNFIELTNLKKNYGKNTVVDIDNMKIPEESIYGLIGPNGAGKSTTMKMICGLTVKDEGI IRIAGEEFNDNNRLNMLKNIGSLIEGPAYYNNLTAYDNLDIVRELKGLKKTDIDDVIDIV GLKNNIKKRVKNYSLGMKQRLAIAMALMGFPKLIILDEPTNGLDPHAMEDIRNLIRNLPK KYGCTVMVSSHILDEIEKVADKIGIIGNGKMLYQGTISDFKSNYRGEIKFKTSDNNRATK ILDNINFECDDEFIKIKYVENNVVGNIIELLVKNNIKIYRVFEEIKSLENLFIEFTERNT L >gi|289656154|gb|ADCS01000036.1| GENE 34 35154 - 35858 354 234 aa, chain + ## HITS:1 COG:no KEGG:FMG_1407 NR:ns ## KEGG: FMG_1407 # Name: not_defined # Def: hypothetical protein # Organism: F.magna # Pathway: not_defined # 27 221 38 233 250 77 31.0 6e-13 MVFLAFFTINGFFMSVVLFSTNFKNMFSSKDIPWNYALDFYFFIKQLLTPILIASIISKA VSIENDTYMWKFLKSCGVSFNKIYSVKFWNIYKKYLIYQMLEWIFLICISKFVGLHQPIP IFRFIVYFISQSLISFLLMSFHYVLSLKWENQLISISIAIIGTLVGLLSSLISKFICIFM PYSWYLSLSSIKVTMISEDKFVRNILPINYLPLILSGILGITIYLIGRNIRGDE >gi|289656154|gb|ADCS01000036.1| GENE 35 35863 - 36588 315 241 aa, chain + ## HITS:1 COG:BH0447 KEGG:ns NR:ns ## COG: BH0447 COG4200 # Protein_GI_number: 15613010 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 1 180 5 183 247 58 25.0 9e-09 MIRIEFKKLKNSKLFLPIILLPIFSVGYGTVNYYINREILNLEWISLWTQVYLFYGLIFF PALIGIVCAYIWNNEHKNNNFKLLFSSSKSFYNIILSKICVVFIISFIIQIYFLILFNIS GSFLNFNSQFPFEILYFIIIINLFNISIICIQCYLSLKINSFAIPVALSIVYALLGMLAA AFAKIPELKYIFSNANMTFAMNHFPYKSFSKLEYFKMMTYNFLLTIFFIKLQVRELKNKL K >gi|289656154|gb|ADCS01000036.1| GENE 36 36657 - 37211 522 184 aa, chain + ## HITS:1 COG:no KEGG:Thit_0515 NR:ns ## KEGG: Thit_0515 # Name: not_defined # Def: hypothetical protein # Organism: T.italicus # Pathway: not_defined # 1 171 1 168 188 78 31.0 1e-13 MILEAIIIGLILSKFFNGNFDNFNKFNLKGKSLIVIGIISNLLIILFTSYDFKIITYTVI KYYEYFHIISFAVLIIGLLFNYDNFGIILISIGLILNLVPIILNGKMPVDYEALLLTNNN RLIDIISKGRSLSHIVLDNPKARILSDIIAITSPYPMPKVISIGDILISVGLICSLILIS RRKS >gi|289656154|gb|ADCS01000036.1| GENE 37 37208 - 38050 861 280 aa, chain + ## HITS:1 COG:BS_ybbP KEGG:ns NR:ns ## COG: BS_ybbP COG1624 # Protein_GI_number: 16077243 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 4 268 3 265 273 231 45.0 1e-60 MNFFDNIFNIIRVRDIIDITVIAIITYNCLKLLKGTRAEQLAKGILVILILTKLSEWGKF YTLYWLLNKLMTWGIVALLIVFQPELRRGLEFLGRSSSIRNNLNTKYEMPSTVTEICDAV ASLSRQKIGALIVIERKTGLNEIVETGTSIDGYVSSGLLINIFIPNTPLHDGAVIVKGDR VVAAACFLPLSDNGNISKELGTRHRAGIGITERSDCLSIIVSEETGSISIAEGGIISRYL DLPTLKTILEKVYTKTSIETTNSILNKWRIGNEKGNNSDK >gi|289656154|gb|ADCS01000036.1| GENE 38 38022 - 39263 1552 413 aa, chain + ## HITS:1 COG:CAC3078 KEGG:ns NR:ns ## COG: CAC3078 COG4856 # Protein_GI_number: 15896329 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 7 409 4 403 403 74 20.0 3e-13 MKKAITQISKERMLQIISVVFAILLWSYVRSGVDPEMKVTYKGIEVRYENIAEIKSNNLS VISPKEATVDVVLKGKQSNISKISRESVRASVNLSGYYSGDYKIPIKVQVDANNIIVDSK EPESISFKIDENISKNINVDIKTVGELADNYVLGNVKQKEEVKITGPKTYIDSIDKIVAV ADISGKSESTVITTPVIAYNKDAQEISELTVEPENLNIEVPILKTEIVPVRLRIIGKGSD NIDAKEFFVEPNSVTIKGNSAVINKIDEILTKPVNVNDLTEKKIPVDIDLPDGVALVDND LKFVASHFPISLSEQNIDFKFSEIKILNLEEKLEEKLTLNFNKGDQITVVVTPKDPLSTE KIDKENMSLSLDLKDYTTGVHNVKLNVSLPEIYKVVKIKPEFIEITIDKKRIF >gi|289656154|gb|ADCS01000036.1| GENE 39 39332 - 40783 1485 483 aa, chain + ## HITS:1 COG:aq_2023_3 KEGG:ns NR:ns ## COG: aq_2023_3 COG0516 # Protein_GI_number: 15607007 # Func_class: F Nucleotide transport and metabolism # Function: IMP dehydrogenase/GMP reductase # Organism: Aquifex aeolicus # 201 480 1 281 284 362 64.0 1e-99 MQYFGEGLTFDDILLLPGKSNVLPNNTDLKTKLTEKISLNIPLMSAGMDTVTEANMAIAM AREGGIGIIHKNMSVEVQAKEVDKVKRSEHGVITDPFSLSKNHTIADADRLMDTYRISGV PIVDENNKLEGIITNRDIRFEQDLDKKISEVMTKENLITGHVGISLDEALKILRRYKVEK LPLIDDDGLLKGLITIKDIEKQVQYPNSTRDESGRLLAGAAIGVTSDVLSRVDALIKSKV DVLVIDTAHGQSEGVLNTIREIKSAFPNIQLIAGNVATYEGTYDLIKAGADCVKVGIGPG SICTTRVVTGIGVPQITAIMEAARAANVLGVPIIADGGIKYSGDITKAIAAGANVVMLGS LLAGTDESPGEEIFAEGRRFKSYRGMGSLGAMNSGSSDRYFQTETKKYVPEGVEGRVPIK GKVGDVVYQLMGGLRSGMGYTGSHNIKELQTNTKYIKITTATLQENHPHNITITREAPNY ISK >gi|289656154|gb|ADCS01000036.1| GENE 40 40929 - 41621 882 230 aa, chain + ## HITS:1 COG:BS_phoP KEGG:ns NR:ns ## COG: BS_phoP COG0745 # Protein_GI_number: 16079963 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Bacillus subtilis # 1 225 1 232 240 187 43.0 2e-47 MSTKILLVEDEDAIRKFVKINLEREGYDVYEAPTGEDGVAIAREVHPEIVVLDVMLPGID GFEVCRILRGEFPELGIVMLTAKTEDYDKIMGLQYGTDDYLTKPFNPTELTLRIKSLERR LEPEEHTNKNLIIFPPFKLDTYSRKFYKGDEELELTPTEYQIMKNFMQNPGKALNRDEIL NLVWGEDFVGDSKIVDVNIRRLRSKIEENAAKPKFIETVWGLGYRWHIEV >gi|289656154|gb|ADCS01000036.1| GENE 41 41623 - 43041 1331 472 aa, chain + ## HITS:1 COG:BH1945 KEGG:ns NR:ns ## COG: BH1945 COG0642 # Protein_GI_number: 15614508 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Bacillus halodurans # 1 460 1 459 462 166 28.0 8e-41 MKKSIGKRLVNSFLFIIIFAVTIIAFFLIVGFKQFYYNTIENELENRLLISMDFFEKFYS DKNLEEILIDDNDLIWAHSNYEVQILDAEHYVVLDTVGAMPTDPITSSDVKYAKNGTITS WVGSNNYTDEITMAVTGVLKNQNGDIIGYLRFISSLEEVNISIFKTAVVIVLFGLLVILI TAIMSLILARSIVKPIVELKNVAEKMANGQYKVHSNVNSKDELGQLSKTLNTMAQEIVKK EQIKNDFISSVSHELRTPLTSIKGWAVVLKSAKEDERQLIEDGLNIIENESDRLAKMVEE LLDFSRFISGRIQLEKDAFNIADTCNDVAKQMKPRAELNKVDFIIDISEDKAIIVGDENR IRQLLINLIDNAIKFTSENGWVKLKSYVEDEKFVILVSDNGMGISKKDLAHVKEKFYKGK HSKSHSGIGLSVSDEIAKLHGGKVEIFSEEKIGTTVKVTIPVPIYDKGDINE >gi|289656154|gb|ADCS01000036.1| GENE 42 43034 - 44461 1464 475 aa, chain + ## HITS:1 COG:no KEGG:Ccel_2248 NR:ns ## KEGG: Ccel_2248 # Name: not_defined # Def: hypothetical protein # Organism: C.cellulolyticum # Pathway: not_defined # 1 473 1 479 490 135 25.0 4e-30 MNRVKLVLITLMLLILTGCSFINIDMNKVETPTISKTPISGKWIITKCVFKEDYGEVNFN YKDYIGKDVVFTNNSAIVGNLYSENVTFKAKKVNAANYLYKKFDINKKKLNIDSDNLYIV DIYDKYSLFYEIIKASEDVCYIYADEVFLKITKISDTISDDEFNEILKRGKDEFNRSESI ESIKSSENGFLLGIKYTKDESSTKAFDYKTIFIKFKDNEIENSNEVDKILLPKQNKFFEI SVDRQKNGDFYNDDVIVSSKFNNESFKINNEVVPSLKEIMFVSENYINYYETVEQYLNEN RYSLYSLNILNNHNQIDLDDIVKDGEYLFKRAGMVSMNGNEMGFYDSSNIGFIRENGFWK LVGIIKFKDDSYKDKIFDLNILLPKDIVKYDKLSIPMSEIKEKFPNVKDAFISPNNRFLI TMEIESLKVYNIINKEINPNVIYEIKIPKNSETIMTQWSMGKYSQMWDKEMSTEK >gi|289656154|gb|ADCS01000036.1| GENE 43 44471 - 44779 351 102 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299143991|ref|ZP_07037071.1| ## NR: gi|299143991|ref|ZP_07037071.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 102 1 102 102 127 100.0 2e-28 MSKILEIMSGHNQYIMISIYVIIAAIIVTFVVNFVTKSLRFVKYLPGIFLICIGMFSLFS VVNDLFNPENLDNIVIFVISSAAGIISFLFALILGIIQNDLG >gi|289656154|gb|ADCS01000036.1| GENE 44 44786 - 45031 267 81 aa, chain - ## HITS:1 COG:VNG2274C KEGG:ns NR:ns ## COG: VNG2274C COG2827 # Protein_GI_number: 15791086 # Func_class: L Replication, recombination and repair # Function: Predicted endonuclease containing a URI domain # Organism: Halobacterium sp. NRC-1 # 3 74 2 73 77 91 58.0 4e-19 MNYFVYILECSDKTLYTGYTVDLSKRILLHNSKLGAKYTRGRTPVTLKYFEKFNNKSDAL KREIEIKKLSKIQKLNLIKKG >gi|289656154|gb|ADCS01000036.1| GENE 45 45031 - 45642 522 203 aa, chain - ## HITS:1 COG:lin1801 KEGG:ns NR:ns ## COG: lin1801 COG2137 # Protein_GI_number: 16800869 # Func_class: R General function prediction only # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 10 199 11 203 269 68 26.0 1e-11 MIIKNILYNKKSNTFTVNTDTDYNFEILEDTLVKFNLYKSMEINHEIIKNILFENKKYIA INLSLKYIRNLKTEYEIREYLKLNQIETEIIDKTICYLQSMNYIDDLKYAKYYTSDKIRI NKHGLQKIRLALSLKGINKNIIDSVFEDADTDTEHKNLLSEIEKKIKYNKTDKNQYEKLL KYLTNKGYSYSKIKLALKEINYK >gi|289656154|gb|ADCS01000036.1| GENE 46 45753 - 46190 527 145 aa, chain + ## HITS:1 COG:CAC0504 KEGG:ns NR:ns ## COG: CAC0504 COG1716 # Protein_GI_number: 15893795 # Func_class: T Signal transduction mechanisms # Function: FOG: FHA domain # Organism: Clostridium acetobutylicum # 5 134 20 151 159 70 30.0 1e-12 MFELISQVLKYIFIFIIYLFIFGIIRLMYLDIRSMDKKGSSPDTAYLKVVNRLDTLNFKM HEYYVLKGKVVAGRSSKCDIVIKDKFVSKEHIKIIEDGNSYFLEDLDSANGTFLNGEEVH DIIELRNGDKIGVGFIQFIFVDNRG >gi|289656154|gb|ADCS01000036.1| GENE 47 46147 - 46876 483 243 aa, chain + ## HITS:1 COG:CAC0505 KEGG:ns NR:ns ## COG: CAC0505 COG0772 # Protein_GI_number: 15893796 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Clostridium acetobutylicum # 54 240 37 217 400 93 32.0 3e-19 MSDLSNLFSSIIGGNMLEKVLKTRRPRDLLLAFELLSILLLFFFNNKHVDKYIVLLFTGL VLILYISNFILGRVSTGDNYLFLIASMLLSIGIITIYRINPSLGIRQIVWSLVGISLFYI TYFAMRVFRRLEKYTLHYFAISIFLFLITAVFGTDQGMGAKNWISMGSFSMQPSEITKII VIFLVAAYYTSFQYQISKKFRFKPYTLMIIIYFLIGLLFIQKDLGTAAIFLAIFTGIQFV YED Prediction of potential genes in microbial genomes Time: Fri May 27 07:39:56 2011 Seq name: gi|289656153|gb|ADCS01000037.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.37, whole genome shotgun sequence Length of sequence - 18078 bp Number of predicted genes - 21, with homology - 20 Number of transcription units - 5, operones - 4 average op.length - 5.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 19/0.000 + CDS 2 - 856 783 ## COG0772 Bacterial cell division membrane protein 2 1 Op 2 . + CDS 858 - 2297 1552 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 3 1 Op 3 19/0.000 + CDS 2305 - 3003 418 ## PROTEIN SUPPORTED gi|163764767|ref|ZP_02171821.1| ribosomal protein L15 4 1 Op 4 . + CDS 3012 - 3488 669 ## COG0245 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 5 1 Op 5 . + CDS 3492 - 4148 852 ## COG0176 Transaldolase 6 1 Op 6 1/0.000 + CDS 4150 - 5118 1432 ## COG1494 Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins 7 1 Op 7 . + CDS 5149 - 6843 1742 ## COG1158 Transcription termination factor 8 1 Op 8 . + CDS 6833 - 7615 169 ## PROTEIN SUPPORTED gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 9 1 Op 9 . + CDS 7612 - 8304 770 ## Thit_1527 hypothetical protein + Prom 8318 - 8377 5.0 10 2 Op 1 . + CDS 8500 - 8577 71 ## 11 2 Op 2 . + CDS 8558 - 10465 2091 ## COG0441 Threonyl-tRNA synthetase + Term 10481 - 10528 10.5 + Prom 10575 - 10634 10.5 12 3 Op 1 8/0.000 + CDS 10676 - 11032 430 ## COG2739 Uncharacterized protein conserved in bacteria 13 3 Op 2 23/0.000 + CDS 11032 - 12369 1836 ## COG0541 Signal recognition particle GTPase 14 3 Op 3 19/0.000 + CDS 12423 - 12704 357 ## PROTEIN SUPPORTED gi|169824223|ref|YP_001691834.1| 30S ribosomal protein S16 15 3 Op 4 12/0.000 + CDS 12726 - 12962 362 ## COG1837 Predicted RNA-binding protein (contains KH domain) 16 3 Op 5 30/0.000 + CDS 12946 - 13455 589 ## COG0806 RimM protein, required for 16S rRNA processing 17 3 Op 6 33/0.000 + CDS 13452 - 14180 754 ## COG0336 tRNA-(guanine-N1)-methyltransferase 18 3 Op 7 . + CDS 14185 - 14532 397 ## PROTEIN SUPPORTED gi|28210938|ref|NP_781882.1| 50S ribosomal protein L19 + Term 14541 - 14572 1.1 + Prom 14553 - 14612 11.2 19 4 Op 1 . + CDS 14636 - 16291 1678 ## COG3858 Predicted glycosyl hydrolase 20 4 Op 2 . + CDS 16341 - 16985 680 ## FMG_0687 hypothetical protein + Term 17001 - 17041 5.1 21 5 Tu 1 . + CDS 17046 - 18044 1024 ## COG2502 Asparagine synthetase A Predicted protein(s) >gi|289656153|gb|ADCS01000037.1| GENE 1 2 - 856 783 284 aa, chain + ## HITS:1 COG:CAC0505 KEGG:ns NR:ns ## COG: CAC0505 COG0772 # Protein_GI_number: 15893796 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Clostridium acetobutylicum # 3 275 133 397 400 172 42.0 8e-43 ITAVFGTDQGMGAKNWISMGSFSMQPSEITKIIVIFLVAAYYTSFQYQISKKFRFKPYTL MIIIYFLIGLLFIQKDLGTAAIFLAIFTGIQFVYEDNKKVILVNIALMIAGAVLGYLIFN HVRVRVDIWLNPWAPDKIYGKGSQIVQSLFAISEGGFFGTGIGLGYPKLIPVGYSDFIFP IICEEMGIFTGIGIIMLFMLLTYRGIKIAISQEYKFYRIISICVAVLFAVQTFLNIGGVI KLIPMTGITLPFVSYGGSSMISSCIALGILQVASEDMSYKYNEV >gi|289656153|gb|ADCS01000037.1| GENE 2 858 - 2297 1552 479 aa, chain + ## HITS:1 COG:CAC0506 KEGG:ns NR:ns ## COG: CAC0506 COG0768 # Protein_GI_number: 15893797 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Clostridium acetobutylicum # 12 453 12 460 482 261 35.0 3e-69 MDVKENKKILTLLVFLIVLFLSLILYLSYFTVFKASKIIDNPANRRDVLKVAEIKRGSIS DRNGEVLAYSDGEKYKYQRHYPYPTIYSHLVGYSSKVRGNSGIESSYNKYLLGREGSNTL KAIRAFFDKRIEVNAGNNLILTTDTNIQQRSRDLLDELGEKGAIVVMKPKTGEILSLVSY PDFNVESIDKDYAAIVERNEGAFFNNAIQGLYTPGSTMKIVTAASIIESGINQDYTDIGE EKLGGYPIKNSKNMVYGDINLMEAFTFSVNTYFANKAIGVGKDKFGETAEKFMFNKKIQF DLNTTTTELAISKCKYKDWDNQALASAGIGQADIGATPLEMCMVASAVANEGKMMKPYLV SKVTNNAGNTILENKPEVLSEAMKVETANQIREMMINVVNKGSGKSAALRNVQVAGKTGT AQRSVEKSINNAWFIGFAPAEDPQIAVAIVIQNVDQLGGEVAAPMAQEIINYSLSQLNK >gi|289656153|gb|ADCS01000037.1| GENE 3 2305 - 3003 418 232 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764767|ref|ZP_02171821.1| ribosomal protein L15 [Bacillus selenitireducens MLS10] # 9 227 6 222 234 165 43 2e-40 MYKDNYVTAIIAAAGMGKRMKNSLNKQFLSINDIPILAHTIKKIEFSKYIDFIILIIRRS DINYVGEIISKYGINKPFKLVYGGKERQDSIYNGLINMPDDTKIVLTHDGARPFVDVAKI DYAIESVFETGSCTLANPVKDTIKVSLNGEIVDYTPNRAELWAIQTPQVFLKNIIIGAYK QAYDEGYYGTDDCSLVEKTNRKVKLILNDYNNIKITTPEDLIIAEAINKDNT >gi|289656153|gb|ADCS01000037.1| GENE 4 3012 - 3488 669 158 aa, chain + ## HITS:1 COG:CAC0434 KEGG:ns NR:ns ## COG: CAC0434 COG0245 # Protein_GI_number: 15893725 # Func_class: I Lipid transport and metabolism # Function: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase # Organism: Clostridium acetobutylicum # 1 155 1 155 155 184 60.0 7e-47 MRIGIGYDVHELVEDRKLFLGGIEIEYEKGLLGHSDADVLIHAIMDSILGALSLGDIGKL FPDTDDKYKDIDSKILLRKVYDIMIDKGYEIGNIDTVVAAQRPKLKDHILAMRKTIADIL NTDIKNISVKATTTEHLGFIGREEGISAEAVVILVERG >gi|289656153|gb|ADCS01000037.1| GENE 5 3492 - 4148 852 218 aa, chain + ## HITS:1 COG:lin2886 KEGG:ns NR:ns ## COG: lin2886 COG0176 # Protein_GI_number: 16801946 # Func_class: G Carbohydrate transport and metabolism # Function: Transaldolase # Organism: Listeria innocua # 1 213 1 213 214 273 64.0 2e-73 MKFFIDTANLDEIREINSWGIISGVTTNPSLIAKEGRVFEDVVREIAEIVDGPISAEVTA LDSETMITQAMELSKINKNIIVKIPMTQEGLKAVNILSKKGIKTNVTLIFSVNQALLAAS AGANYVSPFVGRLDDIGQDGMELIRDLSEIFNIYGIETEIIAASVRNTIHVYECAKSGVD IATIPYKVFKQMTTHPLTEIGIEKFLKDFRDVRTKGDF >gi|289656153|gb|ADCS01000037.1| GENE 6 4150 - 5118 1432 322 aa, chain + ## HITS:1 COG:BH3431 KEGG:ns NR:ns ## COG: BH3431 COG1494 # Protein_GI_number: 15615993 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins # Organism: Bacillus halodurans # 1 318 1 317 323 324 54.0 1e-88 MNRNLALNLARVTEAAALSAAKFLGKGDKNAADGAAVDAMRRMFDTVEIDGVVVIGEGEI DEAPMLYIGEHIGGTCEEFDKVDIAVDPLDGTTSIAKGMNNAIAVVAVAPRGCLLNAPDV YMDKIACGPKAKGQINLDDTPTENIKRVAKALDKNIEDITVAILDRPRHEKIVEEIRSIG ARIKKVSDGDIVTAIETCFEDSGIDLIMGMGGAPEGVIAAAALKCLGGDFQGRLHPTDEM QMNRCKDLNSDLEKIYYIDDLVKGNEVLFSATGVSKGEILDGVKFFGKDSAKTETLVLRL PSGTVRTIKSNHKLSQKPEYAK >gi|289656153|gb|ADCS01000037.1| GENE 7 5149 - 6843 1742 564 aa, chain + ## HITS:1 COG:CAC2889 KEGG:ns NR:ns ## COG: CAC2889 COG1158 # Protein_GI_number: 15896143 # Func_class: K Transcription # Function: Transcription termination factor # Organism: Clostridium acetobutylicum # 106 536 7 459 483 447 58.0 1e-125 MEKKIENNEILDSKPIEDLRNIAISMGLKDHSSLTRGDYYNYIVKGKKPMIFSYKKDELE KLSVAELRDIATNNGISHSYKLKKEELIKNILLTQSNQDIQIQNKNKLNNMTMSQLRDMA DNLNIKKSYEYRKTELVEEILKIQNIETDLTFDEYYDDFLDSLEEKIEYEEVINVEDLSD NATEIIEEMEDINYVGGILDLHQDGYGFLRVNNYLSGEGDIYVSPSQIRKFRLRNGDEVV GVIRPSKPGESYNALIYIKSVNGFEPNKCINRPYFENLTPIYPKQKLILESDSSDIATRI IDLISPIGKGQRGLIVSQPKSGKTTLLKKIASSISKNYPEVKLIVLLIDERPEEVTDMMR SVKGDVVYSTFDEQPKNHIKVAENVIERAKRLVEQKKDVVILLDSLTRLTRAYNLTTPTS GKTLSGGLDPLSLHKPKRFFGAARNIEEGGSLTILATALIETGSKMDDIIFEEFKGTGNM EVHLDRILSEKRIFPAIDIYKSGTRKEELLLNNDELEFAWTIRRIMNKESTEDVTEFILQ NIIKYEKNKDFIEGIKDKFNLNEK >gi|289656153|gb|ADCS01000037.1| GENE 8 6833 - 7615 169 260 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 [Bacillus selenitireducens MLS10] # 58 260 24 244 255 69 27 1e-11 MKNDLIIESKDNKSFKYLKSLLNKKQRTLDKIFFVEGIKVLEEALKYKIPMYIAVSDTFN KSIVTDLILKYQLNNVVIYYFKNTIFKQLTDTENSQGIIAYFKHIHINGINEIENGKYAF LDDLQDPGNVGGLIRSADAFSLDGIILSKNTVELYNPKLIRSTMASVFRVKLYIVESKNE ILKLKEKGFKIISTSVENAKASYEYKFSENSVITFGNEAKGVSDEVFSYSDEKIYIPMSE EINSLNVNVAASILFYEMNR >gi|289656153|gb|ADCS01000037.1| GENE 9 7612 - 8304 770 230 aa, chain + ## HITS:1 COG:no KEGG:Thit_1527 NR:ns ## KEGG: Thit_1527 # Name: not_defined # Def: hypothetical protein # Organism: T.italicus # Pathway: not_defined # 13 229 22 243 244 143 40.0 5e-33 MTRLVVDKNINSKLKNKLLKMGYELIYTTENKKLLDGINCHPDMLLRPLENRDIICDKEN IDYYKKYFEGYNLIETEKILDKKYPLDVALNFVTYNGYFIHNLSYTDKKVINYYKDRNYK FINVRQGYTKCNILIGKNSLITSDDNIYNKLKEIFNILLIEHGQIVLRGFNYGFIGGASG FLDNKIMFTGDFKNHSSYKKMIEFLERNNEEYVILTDEPIEDYGSILEIR >gi|289656153|gb|ADCS01000037.1| GENE 10 8500 - 8577 71 25 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MEPRFIVLSDDKPLLFGGKNDSKIA >gi|289656153|gb|ADCS01000037.1| GENE 11 8558 - 10465 2091 635 aa, chain + ## HITS:1 COG:CAC2362 KEGG:ns NR:ns ## COG: CAC2362 COG0441 # Protein_GI_number: 15895629 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Threonyl-tRNA synthetase # Organism: Clostridium acetobutylicum # 3 631 4 633 637 743 56.0 0 MIVKLPDGSEKVYECSKTVKEITMDISEGLARVAVGAVVNGETLGMKDLVSCDCDFRVLK FDDKEGKQIFWHTTSHVMAYAIKNLFSGSKFAIGPSIANGFYYDIDVEHRFAPEDLEKIE SEMKKIIKSEYEVEKLSLPRAEAIKLFKDLEQNYKLELIEGIEDENISIYKIGDYYDLCK GPHLENVKAIKAFKLLSIAGAYWKGDENNKMLQRIYGISFEKKKQLDEYIERIEEAEKRD HRKLGRELDLFTMHDEGPGFPFFHPNGMILRNELLGWWRNVLIENGYGEIQTPIILNEAL WHRSGHWDHYKENMYFTKIDGEDYAVKPMNCPGSTIVYSTNPHSYRELPIRLSEFGQVHR HELSGALHGLFRVRTFTQDDAHVYCLPSQIEEEVFKMIDLADYLYSTFGFKYSVELSTRP EDFMGDIETWNKAEESLKVALEKKNIKYSINEGDGAFYGPKIDFHLEDAIGRTWQCGTIQ LDFQMPVNFDLTYINEKGEKARPVMLHRALLGSVERFMGILIEHFAGKFPLWLSPIQVEI IPVSEKFAEFAKELEIKLKNTGLKVYLDERAEKVGYKIREAQLKKINYMLVVGEQEVNSG KLSVRKRNGEEIKDCEVEEFINILKSEIESKEITN >gi|289656153|gb|ADCS01000037.1| GENE 12 10676 - 11032 430 118 aa, chain + ## HITS:1 COG:BH2485 KEGG:ns NR:ns ## COG: BH2485 COG2739 # Protein_GI_number: 15615048 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 1 87 1 87 109 68 48.0 3e-12 MIDKVIEINTLLDFYGKLLSEKQERAITMYYIYDCSINEIAEELCISKQAVSDNIKRAEQ KLIDYEKKLDLVKSYEERLNKLALLRDLFSEFKNNSKSVDDITLRKIYSTIFDKEEVY >gi|289656153|gb|ADCS01000037.1| GENE 13 11032 - 12369 1836 445 aa, chain + ## HITS:1 COG:BH2484 KEGG:ns NR:ns ## COG: BH2484 COG0541 # Protein_GI_number: 15615047 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal recognition particle GTPase # Organism: Bacillus halodurans # 1 430 1 433 451 525 65.0 1e-149 MVFESLSDKLQDTLSRLRGKGKLSEKDIDAAMREVKLALLEADVNFKVVKDFIKSVKERS LGSEVLESLTPGQQVIKIVNEELTSLMGKGEAKIDYSKKPTVIMMCGLQGAGKTTTSAKL ANLMKKNGKRPLLVACDVYRPAAIKQLQIVGSSVDVPVFSMGDKINPVDIAKAALEHAKK NGNDVVLLDTAGRLHIDESLMEELLRMNEQTNPSEVLLVLDSMTGQDAVNVADSFDKLLK LSGVILTKLDGDARGGAALSIRAVTDVPIKFIAMGEKLDQIEVFHPDRMASRILGMGDVL SLIEKAQVAVDEKKAIELEQKIRNQTFTFDDFLDQLEQMKNLGPLEDILGMLPGMNNKML KGINIDNKEFARVEAIIKSMTKEERQKPEIIDISRRKRIAEGSGTSPVDVNKLLKQFRDL RKMMKQFGNMGKTMKNKRFKMPFSF >gi|289656153|gb|ADCS01000037.1| GENE 14 12423 - 12704 357 93 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169824223|ref|YP_001691834.1| 30S ribosomal protein S16 [Finegoldia magna ATCC 29328] # 1 83 1 83 83 142 81 2e-33 MAVKIRLRRMGAKKNPFYRIVVADSRSPRDGKFIEEIGYYDPLTEPKKVVVDSEKANKWI KNGAKPTDTVDRLFKENSVYEAKVEEVKTEDAE >gi|289656153|gb|ADCS01000037.1| GENE 15 12726 - 12962 362 78 aa, chain + ## HITS:1 COG:BH2482 KEGG:ns NR:ns ## COG: BH2482 COG1837 # Protein_GI_number: 15615045 # Func_class: R General function prediction only # Function: Predicted RNA-binding protein (contains KH domain) # Organism: Bacillus halodurans # 1 74 1 74 76 70 52.0 9e-13 MVELVEYIAKSLVDCPDSIKITSHRENDELVISLSVLQSDMGKVIGKQGRIAKAIRSILK AISLKENIRVNLEIEEIK >gi|289656153|gb|ADCS01000037.1| GENE 16 12946 - 13455 589 169 aa, chain + ## HITS:1 COG:CAC1757 KEGG:ns NR:ns ## COG: CAC1757 COG0806 # Protein_GI_number: 15895034 # Func_class: J Translation, ribosomal structure and biogenesis # Function: RimM protein, required for 16S rRNA processing # Organism: Clostridium acetobutylicum # 10 165 7 161 166 110 41.0 1e-24 MKKLSECTIIGKIINTRGIKGEVKIFPLTSSVHRFSDLITVFIGKNLEEFEVSNVSYDDR FVYLKFKNIDNINDILRFKDEFLYIDDADRIELEENTFFINDIIGCKVFDLNDNELGEIK DVIENPVNDLYLLKSETGESLIPAVSQFVKKIDIDNKIIVIDPIEGLIN >gi|289656153|gb|ADCS01000037.1| GENE 17 13452 - 14180 754 242 aa, chain + ## HITS:1 COG:SA1083 KEGG:ns NR:ns ## COG: SA1083 COG0336 # Protein_GI_number: 15926823 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA-(guanine-N1)-methyltransferase # Organism: Staphylococcus aureus N315 # 1 234 1 235 245 245 49.0 7e-65 MKFSILTLFPEFFDALRNYSIVGRAIEESKIEINTVNIRDFSENKHGQVDDYSYGGGPGM VMMAPPIYRAIKSVESENSRVIYLSPQGKTLTQKKLIELSKIEHLVLLNGHYEGIDNRII ENYVDEEISIGDYVLTGAEIPSMVLIDGITRLLPGVLSSDESYSIESHYNGILEYPQYTR PSSFNGYDVPEILLSGNHEKIKQYRIYEAIKVTLKKRPELLDRDKLSDYEKKILNDIEFE GR >gi|289656153|gb|ADCS01000037.1| GENE 18 14185 - 14532 397 115 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|28210938|ref|NP_781882.1| 50S ribosomal protein L19 [Clostridium tetani E88] # 1 112 9 120 122 157 67 5e-38 MDIIRALEAEQIKNDLPKMSVGDTVQVHYRIIEGSRERVQVFEGTVIKIQGESSRKTFTV RRISYGIGVERTFLLYSPRIAKLVIVRKGKVRRSKLYYLRDRQGKAAKVKEKVNY >gi|289656153|gb|ADCS01000037.1| GENE 19 14636 - 16291 1678 551 aa, chain + ## HITS:1 COG:CAC1556 KEGG:ns NR:ns ## COG: CAC1556 COG3858 # Protein_GI_number: 15894834 # Func_class: R General function prediction only # Function: Predicted glycosyl hydrolase # Organism: Clostridium acetobutylicum # 295 542 194 440 446 134 31.0 7e-31 MKKFFIGFIFILLIFAAGGFYFLNSRGSSETSTKYKEFSFIYEDKDIDKKDFAKIDGQYY LSLDFIKEYIDDTISYDESEKAVIFVNTKGTKRIVLGANEAFLNDQRVGLRSAVIEKDGK VLIPSEIFIYDYPVSLRYIEDKKVLVMDRKDIEYAVGIPTGDGLNMREEDSIKSPIVSIL KRDNKVYVYGEKGDFYKVREIDGYSGYIKKSLLDVEFPKNKFKLEIGIDNGEAVKPLNLT WDYTYGPQSQESIDAITSIKGLNVICPTWFSVANSNLDIIDRGNQEYVNKYKALGIEVWA YLDNSFNADLTHEVLSKSSSRYILATKTLRLAKRYGLSGVNVDFENTKIEDRENITQFVR ELSGMFHSEGLKVSVDVTPQISSDVTKEPYNRKELARFCDYVILMAYDQHWASSKKAGSV AEYKWVEGNLNVLFRQIPQEKLVLGVPLYSRLWSENDSNVKSSSLSMNQVKNIIESKGSS ISWDDVSKQDYTEYSENDKLYKIWIEDAKSIEWKTSLINKYNLAGIASWRKGFETSDIWD TIDSVLSNIKY >gi|289656153|gb|ADCS01000037.1| GENE 20 16341 - 16985 680 214 aa, chain + ## HITS:1 COG:no KEGG:FMG_0687 NR:ns ## KEGG: FMG_0687 # Name: not_defined # Def: hypothetical protein # Organism: F.magna # Pathway: not_defined # 3 212 1 208 213 151 43.0 2e-35 MGVLKILAETHRKIAGKIYDKILYEYGIELNLNKLEWGAVAPDYLPYYKFKRHYKEESIN FICREIVNLIFICRYADLYSDKNSFLIKYLSKRIGIISHYLCDYTCYPHAYRMTFIGNMK KHIKYESDLNDYAKEYNFENNHISINSINIECNSLDSLFFTVKNYINYVIDNYKSEENSF SNDLNYAMKLSYNMTDFIVETILDYSEEMGYQFA >gi|289656153|gb|ADCS01000037.1| GENE 21 17046 - 18044 1024 332 aa, chain + ## HITS:1 COG:FN0776 KEGG:ns NR:ns ## COG: FN0776 COG2502 # Protein_GI_number: 19704111 # Func_class: E Amino acid transport and metabolism # Function: Asparagine synthetase A # Organism: Fusobacterium nucleatum # 7 332 4 327 327 377 59.0 1e-104 MRNNSEVTKLDLKETQMAIKSLKDYFQRDLANSLNLARISAPLMVRPETGLNDNLSGFEK AVSFDIRNYDINVEIVQSLAKWKRNALKEYGFKCYEGIYADMNALRPDEELDKIHSIYVD QWDWEKIIKKEDRNEYFLRSVVKEIFEVFKRAEEYINQLYPLVFEKKLPDEIYFIKSQEL EDMYPNLTGKEREREICREKKAVFIIGIGNKLKSGEPHDLRSPDYDDWSLNGDILFWNPV IEDSFELSSMGIRVDENSLKNQLEESNKTERMSMDYHKNIINKKLPYTIGGGIGQSRLCM FFLEKRHIGEVQASVWTPEIIDECKKQNIILL Prediction of potential genes in microbial genomes Time: Fri May 27 07:40:10 2011 Seq name: gi|289656152|gb|ADCS01000038.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.38, whole genome shotgun sequence Length of sequence - 8491 bp Number of predicted genes - 11, with homology - 10 Number of transcription units - 1, operones - 1 average op.length - 11.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 1 - 234 333 ## COG2502 Asparagine synthetase A 2 1 Op 2 . + CDS 306 - 1079 853 ## gi|299144013|ref|ZP_07037093.1| hypothetical protein HMPREF0629_00881 3 1 Op 3 14/0.000 + CDS 1123 - 1617 519 ## COG0817 Holliday junction resolvasome, endonuclease subunit 4 1 Op 4 29/0.000 + CDS 1618 - 2214 665 ## COG0632 Holliday junction resolvasome, DNA-binding subunit 5 1 Op 5 . + CDS 2217 - 3233 1478 ## COG2255 Holliday junction resolvasome, helicase subunit 6 1 Op 6 . + CDS 3260 - 4360 1332 ## COG2385 Sporulation protein and related proteins 7 1 Op 7 17/0.000 + CDS 4375 - 5397 998 ## COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) 8 1 Op 8 15/0.000 + CDS 5406 - 6536 1089 ## COG0343 Queuine/archaeosine tRNA-ribosyltransferase 9 1 Op 9 . + CDS 6538 - 6834 529 ## COG1862 Preprotein translocase subunit YajC 10 1 Op 10 . + CDS 6847 - 6993 170 ## + Term 6994 - 7027 -0.5 11 1 Op 11 . + CDS 7038 - 8384 1566 ## COG0641 Arylsulfatase regulator (Fe-S oxidoreductase) Predicted protein(s) >gi|289656152|gb|ADCS01000038.1| GENE 1 1 - 234 333 77 aa, chain + ## HITS:1 COG:FN0776 KEGG:ns NR:ns ## COG: FN0776 COG2502 # Protein_GI_number: 19704111 # Func_class: E Amino acid transport and metabolism # Function: Asparagine synthetase A # Organism: Fusobacterium nucleatum # 3 77 253 327 327 97 60.0 5e-21 KITLKNQLEESNKTERMSMDYHKNIINKKLPYTIGGGIGQSRLCMFFLEKRHIGEVQASV WTPEIIDECKKQNIILL >gi|289656152|gb|ADCS01000038.1| GENE 2 306 - 1079 853 257 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299144013|ref|ZP_07037093.1| ## NR: gi|299144013|ref|ZP_07037093.1| hypothetical protein HMPREF0629_00881 [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 257 1 257 257 427 100.0 1e-118 MGAISKIKETKYDYNFCSMDIKRYLIEKFLYDNDSESINILLNMYDVDNSIETICPTYIS LKHLKKDIIKFLKHKEGKELIAYNLSNLIHNDVNRFELFLYLEGYRAGSNAVKNINKLEI ITFKNYNIEDLYYRRTLFNYEVKDNEVLKLKENMLKDLKRDSKVRRTIYDIVFKFNLHLL KRKVFNLNAHVDKQLVLNFDITDESDVKFKETNSHLSKKELYGLDRKIVRFLCIDAMRIY ENAYWEGVNDKVLKRYK >gi|289656152|gb|ADCS01000038.1| GENE 3 1123 - 1617 519 164 aa, chain + ## HITS:1 COG:FN0214 KEGG:ns NR:ns ## COG: FN0214 COG0817 # Protein_GI_number: 19703559 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, endonuclease subunit # Organism: Fusobacterium nucleatum # 1 161 1 161 190 169 54.0 2e-42 MIILGIDPGFAIVGYGIIEVVGNKYKVLDYGAITTDSKMSFPLRLEKIYLKLEDLVKKYK PDDIAFEELFFNKNAKTAMAVSHARGVMILCGKLNHKELFEYTPLQIKQAIAGYGRAEKK QIQEMVKFILKLKETPKPDDVADALAVAITHASSLKFKDMFRMK >gi|289656152|gb|ADCS01000038.1| GENE 4 1618 - 2214 665 198 aa, chain + ## HITS:1 COG:YPO2057 KEGG:ns NR:ns ## COG: YPO2057 COG0632 # Protein_GI_number: 16122296 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, DNA-binding subunit # Organism: Yersinia pestis # 1 194 1 201 204 114 37.0 2e-25 MIDYIKGIISELLDNYIVIENNFKGYIVYMSQSDIEQLEIMQEVKIYTRLIIREDNMTLY GFVNKDSRKLFDLLTSVTSVGPKASMGILSTLSASQIIVAILDENSKALTSSPGIGKKTA DRIVLELKDKVSKYNFETRFDVKELKNSLKEEIDISPAVEALISLGYNKYEAKKALTGID ENFDVSKMIKEALKRLGR >gi|289656152|gb|ADCS01000038.1| GENE 5 2217 - 3233 1478 338 aa, chain + ## HITS:1 COG:lin1567 KEGG:ns NR:ns ## COG: lin1567 COG2255 # Protein_GI_number: 16800635 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, helicase subunit # Organism: Listeria innocua # 1 334 1 334 335 408 61.0 1e-114 MEDSRMVEPTITPFDSSNDNTLRPRWLSEYVGQDKVVEKLKIFIEAAKNRHEPLDHCLLN GPPGLGKTTLSYIIANEMGVNVKVTSGPAIERPGDLASILSNLNEDDVLFIDEIHRINRS VEEVLYPAMEDYALDIIIGKGPSARSIRLDLEKFTLIGATTRSGQLTSPLRDRFGVILNL ELYDIDSLTEIIMRSADILNIAIEKEGAMEIACRSRGTPRIANRLLKRVRDYAEVKESGV ITKRVAIKGLNLLDIDKFGLDGLDRKIIRTMIENFMGRPVGIDAIAASIGEERVTIEDAY EPYLMQIGFINRTPRGRVPTKAAYDHFGIEYREQENFL >gi|289656152|gb|ADCS01000038.1| GENE 6 3260 - 4360 1332 366 aa, chain + ## HITS:1 COG:sll1283 KEGG:ns NR:ns ## COG: sll1283 COG2385 # Protein_GI_number: 16329811 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Sporulation protein and related proteins # Organism: Synechocystis # 99 366 127 388 391 149 33.0 8e-36 MLLLSPFSVYAEDDTYFNIKIGKTYTEGSEINVTSKSNIYLVDADYNKIIDLNSKTVTAV LKSGKIILKNKEQIYSNDLVQDGAMMLATDDYLKVNNEYRGYIYFKNLKGNLIVINHIKL EDYLKGVVPKELSAEYPIEALKAQAICSRGFALKNINKYKKLGYNLDDTTNSQVYRGKSC EKDKSNRAVDETNGVYATFEGKVADTIFGASSGGCTADIKDVWGGNGLSYLTVIEDPYSL KYTWNYSLDKSKMTDMLKNNSINIGELLSINITDYDNSGRIKKVDLIGSNSTVNITGNKF RNIFGNTKIKSALFTVSDLGSSFKFDGKGYGHGVGMSQYGAVEMAKEGKSYREIIHFYFP GVELNK >gi|289656152|gb|ADCS01000038.1| GENE 7 4375 - 5397 998 340 aa, chain + ## HITS:1 COG:CAC2283 KEGG:ns NR:ns ## COG: CAC2283 COG0809 # Protein_GI_number: 15895551 # Func_class: J Translation, ribosomal structure and biogenesis # Function: S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) # Organism: Clostridium acetobutylicum # 1 339 1 340 341 448 62.0 1e-126 MKTRDFNYELPKELIAQHPLENRDYSRLLVLNRLTGDIVHKHFYDIYDYLKTGDVLVLNN TRVMPARIFGSRIDRQEHIEFLLLKKIEKDTWECLCKPGKKAKVGTKIFFSERLNGEIVD VLEDGNRIIKFIYEGIFEEILDELGEMPLPPYITEKLEDRERYQTVYSKIDGSAAAPTAG LHFTKELLEKLEDKGVKIVYVTLHVGLGTFRPVKSDDIFNHHMHSEYYEICKDTADEINK AKIENRRIVAVGTTSIRTLESCADDKGMVKESNGWTDIFIHPGYKFKCVDALITNFHLPE STLVMLVSAFATRSMILNTYEIAVKEKYRFFSFGDAMFIY >gi|289656152|gb|ADCS01000038.1| GENE 8 5406 - 6536 1089 376 aa, chain + ## HITS:1 COG:SA1465 KEGG:ns NR:ns ## COG: SA1465 COG0343 # Protein_GI_number: 15927219 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Queuine/archaeosine tRNA-ribosyltransferase # Organism: Staphylococcus aureus N315 # 4 370 6 372 379 543 67.0 1e-154 MFEFELIKESKECKARLGKIKTTHGEIETPIFMPVGTRATVKTMTPEELKELEAQIILSN TYHLYLKPGMEIIEKAGGLHKFMNWDKPILTDSGGFQVFSLSNNRKISEEGVEFRSHIDG SKKFLSPEISVDIQNTLGSDIMMCFDECAPYPSSYEYILNSMNRTTRWARRCKDHHKNVD NQALFGIIQGGMYKDLREISAKDLVALDFPGYAVGGLSVGEPLELMNEILDFTTDFMPKN KPRYLMGVGSPDYLFEAVERGIDMADCVLPTRIARNGTVITSKGKLVIKNAKYKDDFTPI DDECDCYTCKNYSRAYIRHLFNVDEILALRLATIHNLHFLINLMKKIRESIKNDTFMEFK DDFYNKYGYNKIRREF >gi|289656152|gb|ADCS01000038.1| GENE 9 6538 - 6834 529 98 aa, chain + ## HITS:1 COG:TM0859 KEGG:ns NR:ns ## COG: TM0859 COG1862 # Protein_GI_number: 15643622 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YajC # Organism: Thermotoga maritima # 15 94 32 110 116 62 36.0 2e-10 MDPKIAQMLSSVGPLVVVVIVFYFFMIRPQKKKENEIKSMRANLKVGDDIITIGGIIGKV VLVKEDYVVIESSGNKSRIDVMKWGINSVIANKNDLKA >gi|289656152|gb|ADCS01000038.1| GENE 10 6847 - 6993 170 48 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKHVKTLTTKRLKDTFAKGGCGECQTSCQSACKTSCTVGNQKCENSNQ >gi|289656152|gb|ADCS01000038.1| GENE 11 7038 - 8384 1566 448 aa, chain + ## HITS:1 COG:CAC2279 KEGG:ns NR:ns ## COG: CAC2279 COG0641 # Protein_GI_number: 15895547 # Func_class: R General function prediction only # Function: Arylsulfatase regulator (Fe-S oxidoreductase) # Organism: Clostridium acetobutylicum # 1 446 1 450 454 425 48.0 1e-119 MGSIHKFFLNDKYIVLDIASGSVHVVDEIIYDLIGDFLSLDESELYKKYALKYDYESIRE AISEINALKEDEVLFTEDKRLFKPIYNPDNIVKAMCLHVAHDCNLRCKYCFASQGDFNGK RLLMDEETGKKALDFILKNSGNRKNLEVDFFGGEPLMNFELVKKLVDYGRNEEKKYNKHF RFTITTNGVLLRDDVIDYINENMDNVVLSLDGRKCVNDYMRPTISKKGSYDIIVPKFKKL VDKRGDKDYYIRGTFTNENLDFSQDLMEYYNLGFKKTSIEPVVTDEKEEYAIREEHLEKI LNEYEKMSKDYIEIRKKDPDFKFFHFMIDLTQGPCIIKRTVGCGAGSEYVAVTPEGDIYP CHQFVGEEQFKLGNVDEGILNTELRDNFKCSNVFTKEDCYECWARYYCSGGCHANAYYAN NDLKKPYKIGCEMEKKRIECAISILANE Prediction of potential genes in microbial genomes Time: Fri May 27 07:40:30 2011 Seq name: gi|289656151|gb|ADCS01000039.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.39, whole genome shotgun sequence Length of sequence - 19292 bp Number of predicted genes - 20, with homology - 19 Number of transcription units - 6, operones - 5 average op.length - 3.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 19 - 78 10.3 1 1 Op 1 . + CDS 117 - 254 70 ## 2 1 Op 2 . + CDS 321 - 2090 1755 ## COG0608 Single-stranded DNA-specific exonuclease 3 1 Op 3 7/0.000 + CDS 2087 - 4228 2313 ## COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases 4 1 Op 4 1/0.000 + CDS 4237 - 4686 528 ## COG1490 D-Tyr-tRNAtyr deacylase 5 1 Op 5 1/0.000 + CDS 4696 - 5331 777 ## COG0491 Zn-dependent hydrolases, including glyoxylases 6 1 Op 6 . + CDS 5324 - 6706 1230 ## COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases 7 1 Op 7 . + CDS 6715 - 8250 1439 ## COG0769 UDP-N-acetylmuramyl tripeptide synthase + Term 8456 - 8490 3.0 + Prom 8337 - 8396 4.8 8 2 Op 1 . + CDS 8500 - 10275 1999 ## COG0173 Aspartyl-tRNA synthetase 9 2 Op 2 . + CDS 10286 - 10708 346 ## NT01CX_0096 positive regulator of sigma(E), RseC/MucC superfamily 10 2 Op 3 . + CDS 10711 - 11562 610 ## gi|299144031|ref|ZP_07037111.1| conserved hypothetical protein 11 2 Op 4 . + CDS 11546 - 12709 763 ## gi|299144032|ref|ZP_07037112.1| conserved hypothetical protein + TRNA 12726 - 12802 75.0 # Arg CCG 0 0 + Prom 12727 - 12786 79.3 12 3 Op 1 . + CDS 12817 - 13446 637 ## COG1024 Enoyl-CoA hydratase/carnithine racemase 13 3 Op 2 . + CDS 13430 - 13852 289 ## Apre_1099 enoyl-CoA hydratase/isomerase + Term 13855 - 13884 1.4 - Term 13836 - 13879 10.5 14 4 Tu 1 . - CDS 13883 - 14977 1449 ## COG0012 Predicted GTPase, probable translation factor - Prom 15069 - 15128 9.1 + Prom 15036 - 15095 14.5 15 5 Op 1 24/0.000 + CDS 15121 - 16002 967 ## COG1131 ABC-type multidrug transport system, ATPase component 16 5 Op 2 . + CDS 16004 - 16825 944 ## COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component + Prom 16843 - 16902 12.6 17 6 Op 1 38/0.000 + CDS 17017 - 17781 959 ## PROTEIN SUPPORTED gi|158320545|ref|YP_001513052.1| ribosomal protein S2 + Term 17789 - 17832 4.1 + Prom 16843 - 16902 12.6 18 6 Op 2 38/0.000 + CDS 17017 - 17781 189 ## PROTEIN SUPPORTED gi|218462273|ref|ZP_03502364.1| 30S ribosomal protein S2 + Term 17789 - 17832 4.1 19 6 Op 3 24/0.000 + CDS 17843 - 18490 325 ## PROTEIN SUPPORTED gi|42631241|ref|ZP_00156779.1| COG0264: Translation elongation factor Ts 20 6 Op 4 . + CDS 18504 - 19211 830 ## COG0528 Uridylate kinase Predicted protein(s) >gi|289656151|gb|ADCS01000039.1| GENE 1 117 - 254 70 45 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFNETKELKLYKQEENNNQKVLSKFNLFINKIFYKYIKYVINKVQ >gi|289656151|gb|ADCS01000039.1| GENE 2 321 - 2090 1755 589 aa, chain + ## HITS:1 COG:CAC2232 KEGG:ns NR:ns ## COG: CAC2232 COG0608 # Protein_GI_number: 15895500 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-specific exonuclease # Organism: Clostridium acetobutylicum # 1 583 1 587 587 452 42.0 1e-127 MEKWFLKNTKDLTLDYEKLNINKYICNILFNRDIDTEEKLEKFLNPNLEDLHTPLLLPDL IKAANILINSVATNKKIRIIGDYDVDGVMSTYILYKGLSYLKANVDYRIPNRVSDGYGIN LRLIDEARTDGIDLIITCDNGIAARDEIQYAVENGIGVIVTDHHEVPVDTEKKELLPNAL AIVDPKRESSKYPFREICGATVAYKLITYLYKINGIEDEKLYSDFLEFVAIATICDVMPL IDENRVLVFKGLEYLNKTKNSGIKAIINAADLSNNLISAYHIGFIIGPTINSSGRLESAD IAVKLLLEEDYNVALKYATYLRELNSKRQKLTDDGFEKIDKIVNEFNLLEKFPVLILRDK EIDESVIGIIAGRIKEKYNRPAIILTTSKDELKGSGRSIEGFNLFEHVSASKELLSRFGG HAMACGLSLEEENFKKFVIDVNNKSNLTKEDLIKKVYIDTQINLSDVDISLATDIEKLNP FGNGNSKPLFATRELSIRKFNVFGKNKNVIKMVIGDSITQRDAILFENIDEFLDKISKYY NQDEIYKLKNNMTNNIKLDITYIPEINSFRGNDNIELKISHYRVSEGVK >gi|289656151|gb|ADCS01000039.1| GENE 3 2087 - 4228 2313 713 aa, chain + ## HITS:1 COG:CAC2274 KEGG:ns NR:ns ## COG: CAC2274 COG0317 # Protein_GI_number: 15895542 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Guanosine polyphosphate pyrophosphohydrolases/synthetases # Organism: Clostridium acetobutylicum # 2 713 4 740 740 775 53.0 0 MIEELLEKIKIYNPSVEVELIEEAFNLASEHHKKQKRNSGEPYIVHPFNVALILADMNMD TATIIAGLLHDTIEDTDVTYEDIKKEFGVEIADLVEGVTKLKKLNYQTKQEKQAENIRKM VLAMARDIRVIIVKLADRLHNMRTLEYMTDAKKHEKALETLEIYAPIADRLGMSKIKWEL EDLSLRYLDPENYYQLVEMVNKRRHEREALISKITLEIEKNLNKIGIHADIHGRPKNFYS IYKKMKIKGKAFDEIYDLSAVRVLVDDIKDCYGVLGVVHTLWKPIPGRFKDYIAMPKPNK YQSLHTTVIDNNGETFEVQIRTFEMHQTAEYGIAAHWKYKAGVSKSTSFDENLTWLRQLL EWQKDLNDPNDFMETLKIDFFADEVFIFTPRGDVINLPEGSTPIDFAYRIHSAVGNKCTG AKINGRIVPLNYKLKSGDIVDVITNPNSGPSLDWLNIVKSPQAKKKISQYFKIKDRDKNI ERGRDSIEKEAKKLGYKVSDIVKEDWLEDVKNKFNLQSLDDLYAAVGFGTITINQVMSKL VDLYKKYNKDDTPVLPKTTQRVNKASKGGVVVKGVDNVKVRFAKCCNPVPGDDIIGYITI GRGISVHRADCTNIKVLDESARIIDVIWETEEGASYNAEIEIKALDKSNVISDVANRINE SKLILHSLNARSTKDGDLFLNIVVEIHTIDELVRLIEKIKRINNVFDAYRVKA >gi|289656151|gb|ADCS01000039.1| GENE 4 4237 - 4686 528 149 aa, chain + ## HITS:1 COG:TM0730 KEGG:ns NR:ns ## COG: TM0730 COG1490 # Protein_GI_number: 15643493 # Func_class: J Translation, ribosomal structure and biogenesis # Function: D-Tyr-tRNAtyr deacylase # Organism: Thermotoga maritima # 1 149 1 149 149 144 51.0 4e-35 MRAVVQRVLEASITVEGEKISEIGNGLLVLLGVEEHDSDSDFEYIFKKVLNLRVFEDKNA VMNLSLIDQNKELLVVSQFTLYGDVRKGNRPSYIRAAKFEDGINYYNKFIERAKELNIST FGGEYGADMKVQLINDGPVTILLDSNKEF >gi|289656151|gb|ADCS01000039.1| GENE 5 4696 - 5331 777 211 aa, chain + ## HITS:1 COG:CAC2272 KEGG:ns NR:ns ## COG: CAC2272 COG0491 # Protein_GI_number: 15895540 # Func_class: R General function prediction only # Function: Zn-dependent hydrolases, including glyoxylases # Organism: Clostridium acetobutylicum # 4 205 2 199 199 178 46.0 5e-45 MDFKIIRLTLGAYQTNCYIIFDKNNNSVIIDPGAEAKAIIKEIEDRNLTVDKIILTHAHP DHFGALDDVRKHFNVKAFLGRDDNIMLEDRSSELNLVLGLKPNKISADVLVEDGDLISFG DKYFKVISTPGHTPGGICLLIGNVLFSGDTLFCGSIGRTDLPGGDYETILESLKLLVQLP DNTIVLPGHGPESSIEYEKQNNPFIRSMRND >gi|289656151|gb|ADCS01000039.1| GENE 6 5324 - 6706 1230 460 aa, chain + ## HITS:1 COG:BS_hemZ KEGG:ns NR:ns ## COG: BS_hemZ COG0635 # Protein_GI_number: 16081159 # Func_class: H Coenzyme transport and metabolism # Function: Coproporphyrinogen III oxidase and related Fe-S oxidoreductases # Organism: Bacillus subtilis # 60 457 80 496 501 262 39.0 1e-69 MINVVCEILTVAHEAYEFLRLKFPSYEKEGNIFVNIDFDKNILEISCDFLKKKVFIAKCE TLKDKKVLIKQILFENFENYFEVKNKWGILTGIRPTKLAFKLLEKNSRTEAENILKNTYL VSDESIKLIMNIVDLESKIIYPLNKNSYSIYVHIPFCPSKCSYCSFQTLKLNKDVIKKYV DKLICDLINESKYFKNPPRSIYIGGGTPTSIDIYYLESILKTILKYYGIADEFTVECGRP DTINFDVLNMLKYNKVNRISINPQSMREKTLDLIGRNHTISEIYNSYNLARKVGFNSINM DLIIGLPQEKYNDVEYSIDKILELNPENITVHTLAIKNGSEIYDKNIKLSSNIDSIIEMT KDKLKIKGYNPYYMYRQKRMLGNGENIGYSKNGFESIYNILIMEEKHSIIGFGMSSSTKI YYPDENKLKTIMNFRNMKDYLSREDEIFTVKKKIYEKFDF >gi|289656151|gb|ADCS01000039.1| GENE 7 6715 - 8250 1439 511 aa, chain + ## HITS:1 COG:BH2571 KEGG:ns NR:ns ## COG: BH2571 COG0769 # Protein_GI_number: 15615134 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl tripeptide synthase # Organism: Bacillus halodurans # 24 475 23 455 486 203 29.0 6e-52 MNLRKILKNIEILDTKNFIDFDVDIKKICYNSKFITESSLFVAIKGYITDGHKYILQAYE KGAVCAIVEDFIDCEIPQLKVENTRIELANVSKNFYDDPSQKLNIVGITATNGKTTTSFM LDKIYNDAGYRTGIIGTVYTKYSDITIPSVLTTPESLELQSFFRDMLKKKIEKVTMEVSS SSEELYRVKNIDFNIVAFNNFSREHIDQHGSFEKYYEAKSKLVKEASKNAVAILNMDFDH IKDLLTQTKARVITYSLENNDYDFSISELDLSTGFGKYIFNVNRNIDFNDFVLKKQSFEI NLSVAGYSSVMNSVAAIIISLVQNIDVDIIKKSISAFSGVERRFEMIYDEKFKIIDDHYA NVKNIDVTLETLSKMKYKNFRMLYAIRGNRGVNLNRETAEETAKWLKKLDAKTFYATLSK DTVSKKDEVSKEELEIFLNIMEKYNINVKVFDNLENSVYEILKTADKGDVVLFAGCQGMD KGAKFAYNYLKSNNLMKDENYLKNKINNRIC >gi|289656151|gb|ADCS01000039.1| GENE 8 8500 - 10275 1999 591 aa, chain + ## HITS:1 COG:CAC2269 KEGG:ns NR:ns ## COG: CAC2269 COG0173 # Protein_GI_number: 15895537 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Aspartyl-tRNA synthetase # Organism: Clostridium acetobutylicum # 1 589 1 589 595 691 57.0 0 MLENIKGLKRTYYCGELRESNIGQEITLMGWIAKERNLGSIIFADLRDRTGIVQIVFDDT VDKNLFEKAVKLRSEFVVAVIGKVRERSSINDKIPTGKIELIASELRILNESEVPPIYIK DDDNVAENTRLKNRALDLRKPYMQKNLMTRSKLYKITRDFYYNEGFMEIETPMLTKPTPE GARDYLVPSRVNPGKFYALPQSPQLMKQLLMVSGFDRYMQITKCFRDEDLRANRQPEFTQ IDLEMSFVEVDDVIDINERFLKYAFKEMLNIDIELPLMRMKYAEAMDRFGVDKPDLRFGL ELVNISELVKECGFKVFESCTDEGKSVRGINIKNGAEFYSRKAIGKLEDFVKTYGAKGLA WIKVEENGINSPISKFLSEDVVNDIMNKLKAEIGDLLVFVADKNNIVFDSLGNLRNSVAK DMNLIDKDDFKLLWITEFPLFEYDEDEQRYVAKHHPFTSPMDEDLNLIETAPHLARAKAY DIVINGDEMGGGSIRINNPQIQSKMFKALGFTEEEAEDKFGFLLEAFKYGAPPHGGLAYG LDRLVMTFTKSDNIRDVIAFPKTQSATCLLTGAPTELSDLQLNEVHIKVIE >gi|289656151|gb|ADCS01000039.1| GENE 9 10286 - 10708 346 140 aa, chain + ## HITS:1 COG:no KEGG:NT01CX_0096 NR:ns ## KEGG: NT01CX_0096 # Name: not_defined # Def: positive regulator of sigma(E), RseC/MucC superfamily # Organism: C.novyi # Pathway: not_defined # 1 120 1 119 141 71 30.0 9e-12 MEQMGVVVKELGEFVEIHSFRQAACGSSCESCHAKCAESKLYVLKAKNTLGLKVGDKVKI ETNSKNVIKYILLVYGLPLIFFLFGILISYNIFNKYSIDNAQILSFIIAVLTTGLAFYII KKIDVKYGNNKLDVIVLKRC >gi|289656151|gb|ADCS01000039.1| GENE 10 10711 - 11562 610 283 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299144031|ref|ZP_07037111.1| ## NR: gi|299144031|ref|ZP_07037111.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 283 4 286 286 392 100.0 1e-107 MKKQSKILYAFTILSIILLIIISCFCGYSYLNVKNIHKIEEENTSLNNKLVELLKVEEQL KTESNSENLNLEKLSLDFSSKYGYDYTQKEENIIKLEIENLKAANVLIKKQLKDEIKKYS KYYSGDYYKNESLDAIISKLVNLNNMNGAEYLNTNLYTELKISNFIRNAKLSGTIKYLSS INNDNSEINLLLFTTALYSKDLNEIGNDLSDIDENLNKIYAQIISTEEIFSNLEKYGVNT GNLSSKNLSLLKNNCGDLIRQYYENKGVIEILTNIGDKNEKSK >gi|289656151|gb|ADCS01000039.1| GENE 11 11546 - 12709 763 387 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299144032|ref|ZP_07037112.1| ## NR: gi|299144032|ref|ZP_07037112.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 387 4 390 390 570 100.0 1e-161 MKNLSNKFLFLILLTMLLTSFALGYFGYINLKKVNSVQLVYKEKNKTLKEDIKLKEDNIN SIKSKLDLLKEQVKEINEIDNKYSKIQLPDSESSVMGYESYILKIFKPNYDISRYKSISE KTNSYRKLIATFFGDDEVMDLEEAKSNILIGNILMNDKIFSYLNEKVVENNNRIFKKIGL YKYLEKTNNFFIKYVIFEKISEEKSSQVEAYTPLEMKEFSSNILYLKDELIGIYDNVLYP DEKNILYLNDIKNAVNEEKKSINYTDNFKKYSYSIDTIKDMYNCMTLSIDINSQNIDYLN GYDILDKTFEIENNIQVLRYLTDNRKRLYLIEERSNGKPIKLVYFSASGKPYFELDIQNY KGIYFNFEKTKEIKNKYNEAIKLYNKF >gi|289656151|gb|ADCS01000039.1| GENE 12 12817 - 13446 637 209 aa, chain + ## HITS:1 COG:YDR036c_1 KEGG:ns NR:ns ## COG: YDR036c_1 COG1024 # Protein_GI_number: 6320241 # Func_class: I Lipid transport and metabolism # Function: Enoyl-CoA hydratase/carnithine racemase # Organism: Saccharomyces cerevisiae # 14 194 50 238 300 127 36.0 2e-29 MYVNKIISNNIGYLILNRTKKLNALNIDMIRELREKYCDFIKNDNVKIIVLKGNNNKNFC AGGDIVTLYKEYIINNNSPMFFFEEEFELDYLLFNSKKPIISFISGITMGGGVGLSITSS IVVADDTTKWAMPETRLGMIPDVGVGYYFSKIEKPLALYISLLGNILFGSDLTKLNIADF YIKNSSIRNIEIELEQFDFKNLSFDEMVF >gi|289656151|gb|ADCS01000039.1| GENE 13 13430 - 13852 289 140 aa, chain + ## HITS:1 COG:no KEGG:Apre_1099 NR:ns ## KEGG: Apre_1099 # Name: not_defined # Def: enoyl-CoA hydratase/isomerase # Organism: A.prevotii # Pathway: Fatty acid metabolism [PATH:apr00071]; Valine, leucine and isoleucine degradation [PATH:apr00280]; Lysine degradation [PATH:apr00310]; Tryptophan metabolism [PATH:apr00380]; beta-Alanine metabolism [PATH:apr00410]; Benzoate degradation via CoA ligation [PATH:apr00632]; Propanoate metabolism [PATH:apr00640]; Butanoate metabolism [PATH:apr00650]; Limonene and pinene degradation [PATH:apr00903]; Metabolic pathways [PATH:apr01100]; Biosynthesis of secondary metabolites [PATH:apr01110] # 8 140 212 345 355 73 35.0 3e-12 MKWFFNAKHIISKYKIKEDYTDLSISSDKINNHFDKNKLSDIFNSLKEGNDKFSIDTLNE LNNKCPLSLQMTFLKYFKCKNISILETYMLDLKLLKYCCESGNMKEGIRGVMIDKEYIPA FKPHSYKEVDIKLINKLLKI >gi|289656151|gb|ADCS01000039.1| GENE 14 13883 - 14977 1449 364 aa, chain - ## HITS:1 COG:CAC2134 KEGG:ns NR:ns ## COG: CAC2134 COG0012 # Protein_GI_number: 15895403 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted GTPase, probable translation factor # Organism: Clostridium acetobutylicum # 1 364 1 365 365 448 65.0 1e-126 MKLGIVGLPNVGKSTLFNALTKAGAEAANYPFATIEPNIGVVNVPDERLKVLSEMSNSDK TVYTNIEFFDIAGLVKGASKGEGLGNQFLSNIREVDAIVHVVRCFENENIIHVDGSVDPL RDIENINLELIFSDLEQIEKRLSKTEKQLKGDKKLLPEVELLKKLKDVLEKGKPARNVEL SEDEEKLIKNYALLSSKPIIYVANVSEDDISSNIDENKFVKKVREYATSQGDETVVISAA IEAEIQSLDDDEKEMFLKELGLDSSGLDKLIKSSYKLLGLISFLTTGPMESRAWTIIKGS KAPQAAGKIHSDIERGFIKAETISYDDLISCGSMASAREKGLIRSEGKEYIMQDGDVVVF KFNV >gi|289656151|gb|ADCS01000039.1| GENE 15 15121 - 16002 967 293 aa, chain + ## HITS:1 COG:lin2078 KEGG:ns NR:ns ## COG: lin2078 COG1131 # Protein_GI_number: 16801144 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Listeria innocua # 1 289 1 289 295 161 33.0 1e-39 MSAIVISELTKRMGKKRIFSDLNLEVIDGEFFALLGLEGSGKTTLSKILFNFLKPTKGKA TIYDMDCVRDSKNIKESVSIIPEDIIFQENIKVSTMLKRTLSLHNLKNTDDIATLTEYFN LNSRLRLLEMNENEKKLFLIINALITKPRLLIIDEPSKYLNSNQVGKLFEYLNTLKVDEG LTVFILTQSLVEAQRYCDRAAYLYNGQIKEVEFLSDKIANDKIIKIYSPLNDLSPFVNIG ARIIKDENKDKILYYDKDMKILSRVIAESCIDNYSIENSSLYDKILAYFNEEA >gi|289656151|gb|ADCS01000039.1| GENE 16 16004 - 16825 944 273 aa, chain + ## HITS:1 COG:lin2077 KEGG:ns NR:ns ## COG: lin2077 COG1277 # Protein_GI_number: 16801143 # Func_class: R General function prediction only # Function: ABC-type transport system involved in multi-copper enzyme maturation, permease component # Organism: Listeria innocua # 2 271 3 269 271 83 25.0 5e-16 MIFSREFKSNIGKLVAWTIVLFILVGLLLALYYPMMLDINMKSMFDGFVSSLNPNFKNIL GFDENIDYTELGQYIAFIYQYIAVLVVIFAMQLGANSLSKEQSSGSIQYIYSNPISRSEI MIQKLLSDVLVYFIFLVLLAALTIGLLYVIPMEVAISLQAIIIDIVRIFVAMLLSGLVYM SIGYFFSAISNNTTLSDATSVLFVLITVVIVIIGKIYGAMFFTIVDFFALEVFKPFRFLV SNISIVGVGINLAIFAIFILLSFAIYNSKELNY >gi|289656151|gb|ADCS01000039.1| GENE 17 17017 - 17781 959 254 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|158320545|ref|YP_001513052.1| ribosomal protein S2 [Alkaliphilus oremlandii OhILAs] # 1 231 1 231 232 374 75 1e-103 MSVISMKNLLEAGVHFGHQTRRWNPKMSRFIFTQRNGIYIIDLQKTVKKVDEAYEFIREL SSEGGKILFVGTKKQAQDAVEKEAKKCEMPFINQRWLGGLLTNYKTIRKRIDRLQELTEM ETDGTFDVLPKKEVIQLRHERERLEKFLGGIKDMDRVPDALFIVDPRKERIAVKEAHILG IPVVGIVDTNCDPDEIDFPIPGNDDAIRAVKLITETISNAVLEGKQGAQIQDYSENEEVK VSEEEQPVIEKEEE >gi|289656151|gb|ADCS01000039.1| GENE 18 17017 - 17781 189 254 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|218462273|ref|ZP_03502364.1| 30S ribosomal protein S2 [Rhizobium etli Kim 5] # 173 254 1 81 82 77 48 7e-14 MSVISMKNLLEAGVHFGHQTRRWNPKMSRFIFTQRNGIYIIDLQKTVKKVDEAYEFIREL SSEGGKILFVGTKKQAQDAVEKEAKKCEMPFINQRWLGGLLTNYKTIRKRIDRLQELTEM ETDGTFDVLPKKEVIQLRHERERLEKFLGGIKDMDRVPDALFIVDPRKERIAVKEAHILG IPVVGIVDTNCDPDEIDFPIPGNDDAIRAVKLITETISNAVLEGKQGAQIQDYSENEEVK VSEEEQPVIEKEEE >gi|289656151|gb|ADCS01000039.1| GENE 19 17843 - 18490 325 215 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|42631241|ref|ZP_00156779.1| COG0264: Translation elongation factor Ts [Haemophilus influenzae R2866] # 60 214 142 280 283 129 43 1e-29 MNITTALIKELRDKTSAGMMDCKKALVETNGDLDKAVDYLREKGLASVAKKANRIASEGI VDSYIHGGRIGVIVEVNSETDFVAKNDEFKAFVKDVAMQIAAASPKYVTREEVPAEEVEH EREVLKEQALNEGKPEKIVEKMVEGRLEKFYEDIVLLDQKFIKDPDLKIQDVLNNLAAKI GENLKIRRFVRYEVGEGLEKREEDFAEEVAKQIGK >gi|289656151|gb|ADCS01000039.1| GENE 20 18504 - 19211 830 235 aa, chain + ## HITS:1 COG:CAC1789 KEGG:ns NR:ns ## COG: CAC1789 COG0528 # Protein_GI_number: 15895065 # Func_class: F Nucleotide transport and metabolism # Function: Uridylate kinase # Organism: Clostridium acetobutylicum # 4 234 5 234 236 301 67.0 5e-82 MNPKYRRIVLKLSGEAMAGQKGIGIDIETINSIASQIKMIHDMEVETSIVVGGGNFWRGR DAVNMDRTTSDYMGMLGTVMNALALQDALEKMGIPTRVQTAIEMKEVAEPYIRRRAIRHL EKGRVVIFSAGIGNPYFSTDTTAALRAAEIDADVILLAKKGVDGIYDSDPKFNKNAKKFE KLSYFEILSRELKIMDSTATSLCMDNNIPLIVFGIDEPSSIVDVVNGKDIGTNVK Prediction of potential genes in microbial genomes Time: Fri May 27 07:41:16 2011 Seq name: gi|289656150|gb|ADCS01000040.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.40, whole genome shotgun sequence Length of sequence - 20411 bp Number of predicted genes - 19, with homology - 19 Number of transcription units - 1, operones - 1 average op.length - 19.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 75 - 200 167 ## CLJ_B2657 uridylate kinase (EC:2.7.4.22) 2 1 Op 2 19/0.000 + CDS 211 - 768 819 ## COG0233 Ribosome recycling factor + Term 773 - 799 0.3 3 1 Op 3 32/0.000 + CDS 809 - 1531 575 ## COG0020 Undecaprenyl pyrophosphate synthase 4 1 Op 4 12/0.000 + CDS 1532 - 2308 857 ## COG0575 CDP-diglyceride synthetase 5 1 Op 5 6/0.000 + CDS 2319 - 3341 961 ## COG0750 Predicted membrane-associated Zn-dependent proteases 1 6 1 Op 6 . + CDS 3354 - 4406 1227 ## COG0821 Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis 7 1 Op 7 4/0.000 + CDS 4416 - 8681 4148 ## COG2176 DNA polymerase III, alpha subunit (gram-positive type) + Term 8747 - 8783 5.1 + Prom 8706 - 8765 4.5 8 1 Op 8 32/0.000 + CDS 8795 - 9256 527 ## COG0779 Uncharacterized protein conserved in bacteria 9 1 Op 9 22/0.000 + CDS 9268 - 10407 789 ## PROTEIN SUPPORTED gi|17988250|ref|NP_540884.1| transcription elongation factor NusA 10 1 Op 10 15/0.000 + CDS 10431 - 10700 366 ## COG2740 Predicted nucleic-acid-binding protein implicated in transcription termination 11 1 Op 11 32/0.000 + CDS 10726 - 13110 2694 ## COG0532 Translation initiation factor 2 (IF-2; GTPase) 12 1 Op 12 4/0.000 + CDS 13120 - 13473 561 ## COG0858 Ribosome-binding factor A 13 1 Op 13 1/0.000 + CDS 13460 - 14437 1025 ## COG0618 Exopolyphosphatase-related proteins 14 1 Op 14 12/0.000 + CDS 14415 - 15302 855 ## COG0130 Pseudouridine synthase 15 1 Op 15 9/0.000 + CDS 15303 - 16217 393 ## PROTEIN SUPPORTED gi|163762565|ref|ZP_02169630.1| ribosomal protein S2 16 1 Op 16 26/0.000 + CDS 16328 - 16594 326 ## PROTEIN SUPPORTED gi|121535267|ref|ZP_01667081.1| ribosomal protein S15 + Term 16601 - 16631 1.0 17 1 Op 17 2/0.000 + CDS 16642 - 18786 193 ## PROTEIN SUPPORTED gi|182414675|ref|YP_001819741.1| ribosomal protein S1 + Term 18794 - 18835 3.2 18 1 Op 18 . + CDS 18842 - 19273 539 ## COG0756 dUTPase 19 1 Op 19 . + CDS 19341 - 20409 1058 ## COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins Predicted protein(s) >gi|289656150|gb|ADCS01000040.1| GENE 1 75 - 200 167 41 aa, chain + ## HITS:1 COG:no KEGG:CLJ_B2657 NR:ns ## KEGG: CLJ_B2657 # Name: pyrH # Def: uridylate kinase (EC:2.7.4.22) # Organism: C.botulinum_Ba4 # Pathway: Pyrimidine metabolism [PATH:cbi00240] # 1 40 195 234 238 62 67.0 7e-09 MDSTATSLCMDNNIPLIVFGIDEPSSIVDVVNGKDIGTNVK >gi|289656150|gb|ADCS01000040.1| GENE 2 211 - 768 819 185 aa, chain + ## HITS:1 COG:BS_frr KEGG:ns NR:ns ## COG: BS_frr COG0233 # Protein_GI_number: 16078715 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome recycling factor # Organism: Bacillus subtilis # 1 185 1 185 185 182 55.0 4e-46 MVPEIKKDAEEKMKKTISVYREDLQSIRAGRANPSLLDKITVDYYGQATPLNQVAGISAP EPRLLAITPWDASLIPAIEKAILKSELGITPSNDGKIVRLLIPHLTEERRKELTKIVRKN GENAKVAIRNIRRDSIDEVKKLEKSKEISEDDRKDGEEQIQKLTDKYIEELDKITKSKED ELMEI >gi|289656150|gb|ADCS01000040.1| GENE 3 809 - 1531 575 240 aa, chain + ## HITS:1 COG:BS_yluA KEGG:ns NR:ns ## COG: BS_yluA COG0020 # Protein_GI_number: 16078716 # Func_class: I Lipid transport and metabolism # Function: Undecaprenyl pyrophosphate synthase # Organism: Bacillus subtilis # 4 240 23 260 260 237 50.0 2e-62 MTLKDNIKLDLIPNHIGIIMDGNGRWAKNKNLPRYFGHKEGSKRVIEIVEACYNLGIKSL SLYAFSTENWKRPEEEISKLMDLLVIFIKSQLDKIMENNVKINVLGDISKLPLKVQKEIN RALSLTEHNDKMILNIGLNYGGRDEIIMATKAICEDVLNKKIAINDIETLFSNYLYTKGQ NELDLLIRPSGELRVSNFMLYQLAYAEFWFSNILWPDFTEEVLYEAIIDYQNRNRRFGGL >gi|289656150|gb|ADCS01000040.1| GENE 4 1532 - 2308 857 258 aa, chain + ## HITS:1 COG:SP0262 KEGG:ns NR:ns ## COG: SP0262 COG0575 # Protein_GI_number: 15900196 # Func_class: I Lipid transport and metabolism # Function: CDP-diglyceride synthetase # Organism: Streptococcus pneumoniae TIGR4 # 3 251 4 264 267 119 32.0 4e-27 MSEFKKRLITGVVGLIILGLILYFGGNYLRIALILISMLGSYEMYNAYKKINININFLVI LIGIFSTFVFELVGFSLEFSVVITLLLSFIFTLFSERYNLNDVAYTILTFIYVPYLFSLM LEFENTPYLYLIFIIAFSTDTFAYFVGSKFGKHKLIEKISPKKSIEGSIGGILGCLILSL VYFYITGISINIVSFIFVIIGSISGQIGDLIASKIKRVVGIKDYGKLLPGHGGIMDRFDS IITVIPIVYMLYFITVLY >gi|289656150|gb|ADCS01000040.1| GENE 5 2319 - 3341 961 340 aa, chain + ## HITS:1 COG:CAC1796 KEGG:ns NR:ns ## COG: CAC1796 COG0750 # Protein_GI_number: 15895072 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted membrane-associated Zn-dependent proteases 1 # Organism: Clostridium acetobutylicum # 4 325 6 330 339 231 40.0 2e-60 MNTLIGSIIVFMLVITLHELGHFSVAKMVGIKVNEFSIGMGPKIFQKEGLETKYSIRILP IGGYVAMEGEDERSDDPRSFNNVNVFKRMAVVVAGVCMNFILAVIAFFIVAVIVGTPTNT IGSIVDNSSAYHAGLYAGDKIIEINDIPTKNWEDIVFNISNSKENSDIRIKITRNHNELV KHVIAKSNNGRIQIGITPNYEKSISNAIKYSFLDTIQVIKDVFMTIKLLFKGNVDVTMLS GPVGVISVIGQATSLGMVYLLKMIGIISANLGVVNLLPIPALDGGKLLFLIIEKLIGKKI NEKIENTLSLIGISFLLFLMLYITLFGDLARMNLWNVIKK >gi|289656150|gb|ADCS01000040.1| GENE 6 3354 - 4406 1227 350 aa, chain + ## HITS:1 COG:CAC1797 KEGG:ns NR:ns ## COG: CAC1797 COG0821 # Protein_GI_number: 15895073 # Func_class: I Lipid transport and metabolism # Function: Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis # Organism: Clostridium acetobutylicum # 2 350 1 349 349 386 57.0 1e-107 MIDRKKTKQIKVGNVLIGGDAPISVQSMTNTITKDINSTISQINLLESYGCDLIRFAVND LEDASAIRKIKNGIKIPTIADIQYDYRLALASAENGIDCLRINPGNIGAKWKVEEVVKAC KYHDIPIRIGVNSGSIKQEFIDMYKGVNENSICYSALEEIEILESMSFYDIKVSLKASNV NLSINSYKKFSEFSDYPLHLGITEAGPSFNGTIKSSVGIGSLLAMGIGDTIRVSLTADPI EEVKVGREILKSLGLLKEGIEIISCPTCARTKINLIDMVEKAQDKLYSMNKNIKVALMGC PVNGPGEAKEADIGIAGGNGVGIIFKKGKIIKKVDENKLLEELFKEIENL >gi|289656150|gb|ADCS01000040.1| GENE 7 4416 - 8681 4148 1421 aa, chain + ## HITS:1 COG:CAC3442 KEGG:ns NR:ns ## COG: CAC3442 COG2176 # Protein_GI_number: 15896683 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit (gram-positive type) # Organism: Clostridium acetobutylicum # 25 1419 22 1450 1452 1146 44.0 0 MITFKELLQKLDIDDENLYKKNIKIEKILLDKKNLEIFINFSSYEELDDELKKIIEDKIT NQLNKLKIIYKYNILSKEYTDEISLIKDEIINYNPSAKVWIDNLKIHVKKEESCINIEVF DKNIYYLITKNELKNILEDKLKIFGEYKLNFIETELEIDTSEDKIEEIITSMQKQEKIIS QKIDLQRTSNPTETQKMSSNDKYSYGKKDISSVTKLIFLNSYFKKVTVEVDVFSIDVRET KNNKFLISLSITDYTSSYIAKIFLTKDKIDEFLSKINIGSHVLITGDIQYDSYSKSENIF IKYIEVLEKHIKQDTNNEKRVELKLHSKMSAMNGVSSFNEFAKRASDWGMSSIAITDISD VQGFPEAMECGKKYGLKVIYGLDCNFVDNCEDIVKNYNGATFTNSFVVFDIETTGFSPQV DEITEIGAVKIVDGVIVDRFSQLVNPMIKIPDRVVELTGISNDFVKDEPTIDKVIVDFND FCKNSVLVAHNAGFDISFIRRDMLKYNLSFNFTVLDTLSLARAIIKDIKRFNLTALSKKL GVSLVNAHRAVNDAEATAEVFIKMLDILKKLGIKTFCDINKLKKDIDSSILFESSISLLV KNNVGLKNLYKLVSESHMNYVNRVAKVPRSLINKYREGILVGSGNSSSELFKAVFNMESE ENIRNIARYYDYIEIQPLENNLNYIENNLVKDYDTLKFINKKLYDLGKELNIPVVATGDV YYLDEKDDITRRVILNGQTGRPPENAHIPQKLFFRTTDEMLEEFSYLGKDQSYEVVVKNT NMIANLCEDIKPIPDGTYPPIIEGADSDLRKICYEKAHEIYGDNLPEIVENRLDRELNSI ISNGYAVLYIIAQKLVKKSNDDGYLVGSRGSVGSSFAATMSSITEVNPLPPHYICPNCKY FEDMSNGTVDSGIDLPDKICPVCGSELKKDGHDIPFEVFLGFNGDKEPDIDLNFAGEYQP TAHKYTEELFGEGYVFRAGTIGTVAEKTAYGYVKKFYEDKNISNVEIDRIAKAAIGVKRT SGQHPGGVMICPKSKEIFDFTPIQYPADDKSSGVITTHFDYNFIHGKILKLDILGHDGPT IIKMLEDFTGLNSQKIPLDDEKTISLFSCSDELKLNENIFSSSTGTLGIPEFGTNFVKQM LIETHPKNFAELVRISGLSHGTNVWTNNAQELVKAGKAKLSDVICTREDIMLYLIRAGAE NKMAFDTMEKVRKGKGLSDEQKKIMNTLPLPNWYIDSCEKIEYMFPKAHAVAYVMLSFRI AYYKLNYPLAYYATYFTIKLADFNGELIMKGVNAIKERINDLNNSNDKLSAKEKGELTVL EVVLEMFARGFEFAPVDIYKSNASKFDIYDNKVLMPLRAFFGVGETVADNIVSEREKGEF ISIEDIIKRTKATKSVIDILNSNNLLKEFPQTNQLSLFNLF >gi|289656150|gb|ADCS01000040.1| GENE 8 8795 - 9256 527 153 aa, chain + ## HITS:1 COG:PA4746 KEGG:ns NR:ns ## COG: PA4746 COG0779 # Protein_GI_number: 15599940 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Pseudomonas aeruginosa # 7 144 5 142 152 98 35.0 4e-21 MKKNDLIDKIKNIAEECSNEIGYEIVDVEYQVGNKHDLLSIFIYKKEGIDINDCTNMSRI IESILDKEDIIDKPYYLEISSPGLDRPLKTKDDYRRNVGNEVTVKLYAPLDGKKLIEGIL ENYDESIIILSVEDEKIEIPIKSISLMRQSIKF >gi|289656150|gb|ADCS01000040.1| GENE 9 9268 - 10407 789 379 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|17988250|ref|NP_540884.1| transcription elongation factor NusA [Brucella melitensis 16M] # 4 347 9 350 537 308 44 2e-83 MNEEFIGALNELEKEKGISKEVIFEALESALVSSYRKNFGTSQNVQVDINKDSGEINVFA LKDIVADVDFEDENLQIPISKAKDIDAKFELGDVYSEKIKPANFGRIAAQTAKQVVIQRI KDAERDIIFEDFTDRENEIITGQVQRVSYGNVYFDLGKTEAILPVAEQIKGEVYRQGDRL KLLLLEVKKTTKGPQIILSRSHPNLVKRLFELEVPEISEGIVEVYSISREAGSRTKIAVF SRNEDVDPLGACVGYKGSRVKAIVDELHDEKVDIVIYEKQIDKFIANALSPSKVEKVFAN EKEKSALVVVPDYQLSLAIGKEGQNARLAAKLTNWKIDIKSVSQFEEYLDCEKINEEDLK EKYGYSYVSEISEDYYEEN >gi|289656150|gb|ADCS01000040.1| GENE 10 10431 - 10700 366 89 aa, chain + ## HITS:1 COG:CAC1800 KEGG:ns NR:ns ## COG: CAC1800 COG2740 # Protein_GI_number: 15895076 # Func_class: K Transcription # Function: Predicted nucleic-acid-binding protein implicated in transcription termination # Organism: Clostridium acetobutylicum # 2 89 1 88 88 81 56.0 4e-16 MVKVKKIPMRKCIGCGENKPKKDLIRVVKNKENKIFLDKTGKKNGRGAYICFDMECLEKA IKTKALNRAFEVEINDETYNDLRESIKKQ >gi|289656150|gb|ADCS01000040.1| GENE 11 10726 - 13110 2694 794 aa, chain + ## HITS:1 COG:lin1362 KEGG:ns NR:ns ## COG: lin1362 COG0532 # Protein_GI_number: 16800430 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation initiation factor 2 (IF-2; GTPase) # Organism: Listeria innocua # 1 793 1 781 782 612 46.0 1e-175 MSKIRVHALAKDIGISSKELIDKLSSLNVIVKNHMSTIEETDEAKIRSIYDKTKNPEKEN INKQVKDTKSEKSFSKEQNYKDKNNFQNKQKNDKNLNKFMSDKKNINNKENNKKEFKKND FNKNKQNKDNFIKDETFNKKTGKNLNKDNKNINSNEKFSKKKSNNKIQNSKYDDSEKSFP KRDLTKKTIKKKNKSQKKSEKTDIKTGDGSIVSISAPITIKDFAEKLNVSVAQIITKLIG LGIMASQNEMIDEDTCLLVADDLNIEIKIEEPEAEISIEEKFGLDYEDKESQLKSRPPVV TVMGHVDHGKTSLLDVIKKSHVQLSEAGGITQHIGAYTVNVNNKKVTFLDTPGHEAFTSM RLRGAQITDIAILVVAADDGVMPQTIEAISHAKSANVPIIVAINKIDKPESNLNRVKQEL LDNGLMAEDWGGDVIMVPVSAKTKEGIDDLLEMILLVSEMLELKANPNRKAIGTVIEAKL DKGKGPMATVLIQKGTLHFGDNVVSGFSSGRIRAMTDDKNKNIKKAGPSMPAVILGLSDV PNAGDLIYAVEDEKMARTIADKNRESIRETRINANSKISLENLFDKIKEGEMKELNVVVK ADVKGSVEALNQSLLKLTNEEVKINIIHSGAGGINESDISLASASNAIVIGFNVRPNINA LELAKSEEVDVRTYRVIYDIINDIEAAVKGMLDPDIVEEVQGRCEVRQIFKLPGNIIVAG VYVLNGKLVRKSMIKVLRDDIVIHEGEISSLKRFKDDVKELATGFEGGLAIEGFNDIKEG DFLECYILKEVQKN >gi|289656150|gb|ADCS01000040.1| GENE 12 13120 - 13473 561 117 aa, chain + ## HITS:1 COG:BH2411 KEGG:ns NR:ns ## COG: BH2411 COG0858 # Protein_GI_number: 15614974 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome-binding factor A # Organism: Bacillus halodurans # 1 113 1 112 116 95 41.0 3e-20 MNNKRTHQISEEVRRAISDIVQHKLKDPRIPDIISISHVDVTNDLSFAKVYISILDDDNK IEEAINGINSAKGFIKRELAKLVKIRAIPELIFVKDDSIEIGMKMSKIIEEVNNGNS >gi|289656150|gb|ADCS01000040.1| GENE 13 13460 - 14437 1025 325 aa, chain + ## HITS:1 COG:CAC1804 KEGG:ns NR:ns ## COG: CAC1804 COG0618 # Protein_GI_number: 15895080 # Func_class: R General function prediction only # Function: Exopolyphosphatase-related proteins # Organism: Clostridium acetobutylicum # 12 311 12 314 321 206 36.0 5e-53 METAKFKELINSSSKIYLASHINPDGDNIGSILGMYGILKKLGKEVYLIEDDIVPDTFKF LPFLSEIVRSDTLKNDADLFITLDSADVDRIGANAKVLFYGSKNTVNIDHHSTNTMYADV NIVDALAPATGEILFELAKNLNVKIDKNIALCIYTAISSDTGSFKYDNVRPSTFKIASEL IKIGIDINKVAVNLYQNRSIEKTRLLISAMNNLELYSNGKIGIVYVDDIMIKNCNAQSSD TEGIVEFIRDISGVEIAILFKIKKDSIRISIRTKSYVDATKIVRSFDGGGHIRAAGATLK LPYFDRKEEIIKISLRELNERNINI >gi|289656150|gb|ADCS01000040.1| GENE 14 14415 - 15302 855 295 aa, chain + ## HITS:1 COG:BS_truB KEGG:ns NR:ns ## COG: BS_truB COG0130 # Protein_GI_number: 16078729 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridine synthase # Organism: Bacillus subtilis # 1 257 2 265 309 200 40.0 3e-51 MNGILIFNKPKGISSHDVVYILRKKMKIKKIGHTGTLDPIATGVLIMCIGKATKISQYIM SDTKEYIAKISFGYETATLDSTSEPIKKTDYIPPINEFKNILNSFIGNIEQIPPMYSAIK VNGQKLYELARQGKTIELKKRKITVYNIELLKQVDYKSYYIKIKCSSGTYIRSLIRDIGY SLNSLATMEELTRTKSGEFTIENSISEDKFLSLDNEEIENFIIPIDKALYKYNYYNINDN FYKKLINGVPYKTKLDFKNNELLRIYCKNEFIGIGKYIDSFDFNGIKMEKMLMGD >gi|289656150|gb|ADCS01000040.1| GENE 15 15303 - 16217 393 304 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163762565|ref|ZP_02169630.1| ribosomal protein S2 [Bacillus selenitireducens MLS10] # 1 301 1 309 317 155 30 2e-37 MQVIKIDENYQAVEESIIALGNFDGVHLAHKKLLLKLVSESKKLNLKSSILIFKNHTKDT IYNKKQRLLTSNKQKFEMLRNIGIDIIYEIIFDDSIMKISPVEFIEKFLYKNLKARGIVA GYDYKFGYMAKGDIELLKNLSLKNNIKNFIIDAVIFDGIIVSSSTIRNFIEDGNIEMANK LLGYNYTITGKIIHGKNLGTKNGYPTANIQIDTNYVIPKFGVYDSDIKIKNKVYKAASNI GKNPTIENNGLRIESHILNFNKNIYGETVDLILLKFLRPESKFLNIDELFEKIKEDVNKV KNRI >gi|289656150|gb|ADCS01000040.1| GENE 16 16328 - 16594 326 88 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|121535267|ref|ZP_01667081.1| ribosomal protein S15 [Thermosinus carboxydivorans Nor1] # 1 87 1 87 88 130 70 9e-30 MLNKDEKSKIIDSFKVNEKDTGSPEVQVAILTTRINELNEHLKEHKKDHHSRRGLLKMVG KRRNLLRYLKNKDIERYRSLIEKLQIRG >gi|289656150|gb|ADCS01000040.1| GENE 17 16642 - 18786 193 714 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|182414675|ref|YP_001819741.1| ribosomal protein S1 [Opitutus terrae PB90-1] # 448 687 265 515 557 79 26 2e-14 MEKIFTLDLAGRTLKVTVGKVAEQANGACLVEYGDTVVLVTVTASKTPRDGIDFFPLSVD FEEKMYAVGKMPGGFIKREGKPSEKSILSSRLIDRPIRPLFPEGYRNDVQVVATVLSVDQ DCQPDIVGMIGSSIALSISDIPFDGPTGSVLVGYVDGKYIVNPTETEREKSDIYLVVSGT KTAIMMVEAGANIVSEETMLNAILTAHEEIKKICDFVDQIKAEVGKDKTSYEVFKPNEEI KTKVKEYGTSMIVDAINEPDKIIRIEKVEEAKENIRKHFEELMEEFSKDIEIIMEEIEVT EVRRGIIEDEIRPDGRKLDEIRHLSSETGILPRTHGSGLFTRGQTQVLSIATLAGLSDVQ VIDGLGDDKPKRYIHHYNFPPFSVGDTKPMRGPGRREIGHGALAEKALLPVIPTEEEFPY AIRVVSEVLSSNGSSSQASVCGSTLALMDAGVPIKAPVAGIAMGLIEENGITKILTDIQG LEDHFGDMDFKVAGTKEGITAIQMDIKVEGISKEVLAVALERAKKARLEILEHLNTTISE PRKELSPYAPIIHIIIIDPEKIGEVIGTGGKMINKIIEKTGVKIDIDEDGKVSVLSENSE KAKEAISIIESIVKEVEVGDIFEGKVKKIMKFGAFVELKKGVEALLHISEIQHERTNKVE DILKIGDIVKVKVIEIDEDGKMSLSRKVLLPKEESSKNDATLKNDNDIEKQIIE >gi|289656150|gb|ADCS01000040.1| GENE 18 18842 - 19273 539 143 aa, chain + ## HITS:1 COG:FN1028 KEGG:ns NR:ns ## COG: FN1028 COG0756 # Protein_GI_number: 19704363 # Func_class: F Nucleotide transport and metabolism # Function: dUTPase # Organism: Fusobacterium nucleatum # 1 142 4 145 146 153 54.0 1e-37 MKIKIVNKSKNELPKYQTEGSSGMDLQANIEEPIVLKSLDRTLIPTGLFIELPNGYEAQV RARSGLALKKGLSLPNGIGTIDSDYRGEIKVIIINLGKEDVIINPGDRIAQLVIIKYERV ELDIVNELNETDRESGGFGHTGV >gi|289656150|gb|ADCS01000040.1| GENE 19 19341 - 20409 1058 356 aa, chain + ## HITS:1 COG:CAC1812 KEGG:ns NR:ns ## COG: CAC1812 COG1674 # Protein_GI_number: 15895088 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: DNA segregation ATPase FtsK/SpoIIIE and related proteins # Organism: Clostridium acetobutylicum # 3 356 22 374 765 103 26.0 5e-22 MANRKVKKKSENNIFYGELVSIGFIILGIISLISLFSNKMGLVGSLLYKLFSFLGGTGNF LFPLIFIFLGFIYNINKLKKNFKKYIISSIIILLCILVFLDGTKSSDLTLIDRINLSIEF LDIATSGGVIGSILGFFLYKLFGSIGTYAFLISIIIINIYLLVKYNLISIGKNKPLFTMI AKLFSKKSNLNKNKKTINKNLKKLIENVSEEKDINEFDSENIIADNDVNKNILEENYLND EKNILEKKTAGKNINLNRNESDEIELNKFEKNIRKDQKEDNYIFPPIELLKKSSEKSSVS NQEIIKNGRIIEQTMENFGIDSKIVAINRGPVITCYELEPAPGVKLSKIVALNDNL Prediction of potential genes in microbial genomes Time: Fri May 27 07:41:19 2011 Seq name: gi|289656149|gb|ADCS01000041.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.41, whole genome shotgun sequence Length of sequence - 3747 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 1, operones - 1 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 1/0.000 + CDS 2 - 1480 1981 ## COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins 2 1 Op 2 2/0.000 + CDS 1473 - 2789 896 ## PROTEIN SUPPORTED gi|228000795|ref|ZP_04047796.1| SSU ribosomal protein S12P methylthiotransferase 3 1 Op 3 4/0.000 + CDS 2786 - 3319 345 ## PROTEIN SUPPORTED gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase 4 1 Op 4 . + CDS 3329 - 3746 633 ## COG1058 Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA Predicted protein(s) >gi|289656149|gb|ADCS01000041.1| GENE 1 2 - 1480 1981 492 aa, chain + ## HITS:1 COG:CAC1812 KEGG:ns NR:ns ## COG: CAC1812 COG1674 # Protein_GI_number: 15895088 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: DNA segregation ATPase FtsK/SpoIIIE and related proteins # Organism: Clostridium acetobutylicum # 16 483 298 765 765 523 59.0 1e-148 NKFEKNIRKDQKEDNYIFPPIELLKKSSEKSSVSNQEIIKNGRIIEQTMENFGIDSKIVA INRGPVITCYELEPAPGVKLSKIVALNDNLSMSLASPDIRIEAPIPGKSAVGIEVPNKTK ESVTVREIIQSSEFKRLNSNLPLALGKDVSGSIVMSSIDKMPHLLIAGATGSGKSVCINT IITSILYKSSPKDVRLLLIDPKVVELSVYNGIPHLLIPVVTDPKKAAFALNWAVGEMEKR YKLFAENSVRDLTSYNKKIEKTGNEDERLPKIVVIVDELADLMMVAQGEVEDYIARLAQM ARAAGIYLIIATQRPSVDVITGTIKANIPSRIAFSVSSAIDSRTILDMAGAEKLLGKGDM LFYPGFYSKPVRIQGSFISDEEVESVVDFIIANSTIKNDFEEKINKEIEEKREKLSNDRD PLFNDALKFIVADEQASISFLQRKLKIGYSRAARIVDQMEESGILGPHEGSRPRKLLLSE EEISNLLGENNE >gi|289656149|gb|ADCS01000041.1| GENE 2 1473 - 2789 896 438 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228000795|ref|ZP_04047796.1| SSU ribosomal protein S12P methylthiotransferase [Brachyspira murdochii DSM 12563] # 1 438 1 439 440 349 42 2e-96 MNSIHFITLGCSKNEVDTSQMQSILDSKKYIITNNVNDANVIIINTCGFIDAAKEESVDT IIEAAKYKDVGKCKKLILAGCLAQRYSKELMEEIPEVDAILGTGNIININNILDSAFNGE RIVKVDNINDKYIEGIKKSKVSVTEYVKISEGCNNNCTYCIIPKLRGRNRSRKIEDIYDE VKYLVNNGTREVILIAQNTTDYGIDNYKEYKLKDLVKKLSEIKDLKWIRLMYLYPDNFTD ELIDEFKNNDKLLNYVDIPLQHISDNILSKMNRKTNRNNISELLFKLRNNIPNIIIRTTF IVGFPGEENSDFNELNEFIEENKFDKLGAFIYSREEDTPAFNMNNQIQENVKQKRLDILM STQISISENKLSSNIGNILEVLIEEIADNETYVGRSYMDAPEIDGVVYVKSKNNLKIGSF YNVKITDYLEYDLIGDAI >gi|289656149|gb|ADCS01000041.1| GENE 3 2786 - 3319 345 177 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase [Cryptobacterium curtum DSM 15641] # 5 172 484 669 904 137 40 1e-111 MNLPNKLTFIRILLVPIFVFLMYMNFEGARVIATIVFAIASFTDFLDGYIARKNKLVTNF GKFADPLADKILVCSALICLTSIGDIPAWSVIVIISREFAVTGFRIIAASENITIAASKL GKIKTVSQLIAIIVLLTNITSLYKTGLYIFYFAVFFTILSGIDYFIKNIKVLDLENI >gi|289656149|gb|ADCS01000041.1| GENE 4 3329 - 3746 633 139 aa, chain + ## HITS:1 COG:BS_cinA_1 KEGG:ns NR:ns ## COG: BS_cinA_1 COG1058 # Protein_GI_number: 16078756 # Func_class: R General function prediction only # Function: Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA # Organism: Bacillus subtilis # 2 136 6 140 240 129 45.0 1e-30 MKAGIITIGTEILIGSILNTNSKFLSKRLSEFGVHVSYHVSVRDNAIELSEVINELLNKV DLLFLCGGLGPTNDDITKEVLSNVLGRSCIVDEVQYKKLIDKFKIAGREMTANNKKQIIV IDEAVVLDNKWGVAPGEII Prediction of potential genes in microbial genomes Time: Fri May 27 07:41:23 2011 Seq name: gi|289656148|gb|ADCS01000042.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.42, whole genome shotgun sequence Length of sequence - 14379 bp Number of predicted genes - 13, with homology - 13 Number of transcription units - 4, operones - 4 average op.length - 3.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 5/0.000 + CDS 2 - 1084 1209 ## COG1058 Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA 2 1 Op 2 1/0.000 + CDS 1097 - 2122 1420 ## COG0468 RecA/RadA recombinase 3 1 Op 3 . + CDS 2135 - 3112 922 ## COG0420 DNA repair exonuclease 4 1 Op 4 . + CDS 3109 - 4413 1035 ## BH2381 hypothetical protein 5 1 Op 5 . + CDS 4417 - 4650 398 ## gi|299144065|ref|ZP_07037145.1| conserved hypothetical protein 6 1 Op 6 . + CDS 4652 - 5305 619 ## Cthe_1092 hypothetical protein + Term 5346 - 5397 -0.1 + Prom 5324 - 5383 12.6 7 2 Op 1 . + CDS 5428 - 6966 1929 ## COG1418 Predicted HD superfamily hydrolase + Term 6971 - 7004 4.0 8 2 Op 2 2/0.000 + CDS 7015 - 7980 829 ## COG0582 Integrase 9 2 Op 3 . + CDS 8048 - 9304 877 ## COG2207 AraC-type DNA-binding domain-containing proteins + Term 9312 - 9356 6.2 + Prom 9350 - 9409 8.0 10 3 Op 1 7/0.000 + CDS 9435 - 10661 985 ## PROTEIN SUPPORTED gi|149002994|ref|ZP_01827905.1| 50S ribosomal protein L33 11 3 Op 2 8/0.000 + CDS 10698 - 11690 1213 ## COG0078 Ornithine carbamoyltransferase + Term 11703 - 11751 13.8 + Prom 11781 - 11840 12.5 12 4 Op 1 3/0.000 + CDS 11872 - 12807 1352 ## COG0549 Carbamate kinase 13 4 Op 2 . + CDS 12820 - 14328 2118 ## COG1288 Predicted membrane protein Predicted protein(s) >gi|289656148|gb|ADCS01000042.1| GENE 1 2 - 1084 1209 360 aa, chain + ## HITS:1 COG:SA1127 KEGG:ns NR:ns ## COG: SA1127 COG1058 # Protein_GI_number: 15926867 # Func_class: R General function prediction only # Function: Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA # Organism: Staphylococcus aureus N315 # 1 357 45 376 383 152 29.0 8e-37 NAIELSEVINELLNKVDLLFLCGGLGPTNDDITKEVLSNVLGRSCIVDEVQYKKLIDKFK IAGREMTANNKKQIIVIDEAVVLDNKWGVAPGEIINYNNKKIFLLPGPPREFEPMIDFYL KNFINENNQIIVKSVNIAGIGESRVEDILRKLKLEEHNISINTFAKFYDTEIKIIAEGTD TKQLQRKIDSIVKKLYEVFEGYLYAEDNASISESIVKKLTEKKLTISFAESVTGGLLASK ITSVPNSSKILKNSIVTYSNESKIKLLNVNEKTLNKYGAVSPEVAYEMANGLKDIGFSDI SVSVTGEAGPISSEKEVGLIFVCYYFKNYYEIKKYYFTGSRNEIQERTANTILQHVLFNI >gi|289656148|gb|ADCS01000042.1| GENE 2 1097 - 2122 1420 341 aa, chain + ## HITS:1 COG:BH2383 KEGG:ns NR:ns ## COG: BH2383 COG0468 # Protein_GI_number: 15614946 # Func_class: L Replication, recombination and repair # Function: RecA/RadA recombinase # Organism: Bacillus halodurans # 4 341 3 340 349 453 67.0 1e-127 MDIEKKKALELAISQIEKQYGKGSIMKLGADSKLDIETIPTGSLALDLSLGVGGIPKGRI IEVYGPESSGKTTLALHILAESQKMGGIGAFIDAEHALDPSYAKNLGVDVENLIVSQPDT GEQALEIIESLVRSNAVDIVIVDSVAALVPKAEIEGEMGDSHIGLQARLMSQALRKLTGA INKSKASVIFINQLREKVGVMFGNPETTTGGRALKFYSSIRLEIRKVENLKLGEEIVGNR VRVKVVKNKVAPPFKQAEFDIMYGKGISKEGTLIDVGVQTDVVTKSGAWYSYGEHRLGQG RENAKEFLLANPDISREIEMKIKDKYNLNKSDNIDSSEENK >gi|289656148|gb|ADCS01000042.1| GENE 3 2135 - 3112 922 325 aa, chain + ## HITS:1 COG:BH2382 KEGG:ns NR:ns ## COG: BH2382 COG0420 # Protein_GI_number: 15614945 # Func_class: L Replication, recombination and repair # Function: DNA repair exonuclease # Organism: Bacillus halodurans # 1 318 2 321 332 262 41.0 6e-70 MKFLYFTDTHLRATNPINRIDNFFETLKTKLNEVVNISIEENVDYILHGGDLFDRPDTSI SVVSDFSKIFQKFNVPIYIVSGNHDIFGHNPKTLNRTMLGLLCNLGILNLVNDKKIILKK DISVQLTAYPYTFGMDDDINKSNYLVLEKNPEADYMIHMTHGFLIDRPFIKNIPHTLISE ISSTFADITLGAHYHYGFKTTEINGKYFVNPGSIVRISNSQEEIKRKPKVVIIELNDKIS IKDIYLKNALDGNLVLDRSEMERHKFKQNQIYEFKEIIDSSTELNNLDIYEILIKIATNE FIDDNIKKEAIKRIQNIQIKGADFS >gi|289656148|gb|ADCS01000042.1| GENE 4 3109 - 4413 1035 434 aa, chain + ## HITS:1 COG:no KEGG:BH2381 NR:ns ## KEGG: BH2381 # Name: not_defined # Def: hypothetical protein # Organism: B.halodurans # Pathway: not_defined # 1 314 1 311 470 190 33.0 1e-46 MIFITKVELINFQSHENTVIDFHRGLNVILGNSDSGKTAILRAIKWALYNEPSGNYFIRE GEKETSVTIYFNTGAVVKRYRSNSKNTYYLKKSNLEEFNFDGFGLTVPKEIITEIGMSKI NLDNSLNSIINIAEQLDGPFLLNEKTSVRASAIGRIIGVNYIDDALRETIRDNKQIASDI KYLKSKKEIIEAEILKFDYLKETEVLLNTLIEIKEIITYSKTRLNKLIELKNKYEFNNNE LEKLRKENSKYKNLDLLYNLLSNIEIILFKYNTYSNFYKNLNFYNYEINENIKCLNKYKN LSELSLKYDTLNSLLHDYFNNISIKNEFLDISNRIDEGVKFIDNLKYIDKLETIYKNLVP KIDFIFLFERLSISNKKVSYDINKLEEHLNALSNDIKEKYFEYEKNILNLGYCPFCYSEI DENIINHIRKHYKE >gi|289656148|gb|ADCS01000042.1| GENE 5 4417 - 4650 398 77 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299144065|ref|ZP_07037145.1| ## NR: gi|299144065|ref|ZP_07037145.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 77 1 77 77 84 100.0 3e-15 MNYEYNLNKLKEELEKAKNLKYKAEAKLEQLNVQKEEIIKEIKSHGIEPEHLDEEIEKLK NEIDDLFKKANELIPRD >gi|289656148|gb|ADCS01000042.1| GENE 6 4652 - 5305 619 217 aa, chain + ## HITS:1 COG:no KEGG:Cthe_1092 NR:ns ## KEGG: Cthe_1092 # Name: not_defined # Def: hypothetical protein # Organism: C.thermocellum # Pathway: not_defined # 21 214 31 224 225 205 53.0 1e-51 MDLNILESKINHIEKNLNIDKGKLEILNNNLSDTNSEIKSLIEYDDILSKVIILFQKTSS YGRNQARKQIEELVTKCLQFVFETDIEFIIEITENGKIPQAEFYVLSNYDGYKVKTKPEL SRGGGVVDIISIALRIAFIQLYKPEIKGPIILDEPGKHVSNDYIFNLGEFLRQASSMFRR QIIMVTHNSHLSQICDISYTVEIKNGKSVILQNEELS >gi|289656148|gb|ADCS01000042.1| GENE 7 5428 - 6966 1929 512 aa, chain + ## HITS:1 COG:CAC1816 KEGG:ns NR:ns ## COG: CAC1816 COG1418 # Protein_GI_number: 15895092 # Func_class: R General function prediction only # Function: Predicted HD superfamily hydrolase # Organism: Clostridium acetobutylicum # 5 512 8 514 514 513 62.0 1e-145 MELEMIVKILIGLIIGIAGGYAIRKYIGESKINSAEDLARKIVTDAEHNAEGKKKELLLE AKEEIHKLRSEHEHEVKQRRNEIQQIEKRVIAREESVERKLSSLEKKEDNLNSKIEEAKK KVEKASLLVEQREEELQKVAGLTSEEGKKILLSELEKEITQESALIIRENEQKVKDECNK YAKNIIAQAIQRCAADQVAENTVSVVSLPNDEMKGRIIGREGRNIRTIESLTGVDLIIDD TPEAVVLSCFEPVRREVARVALEKLVADGRIHPTRIEEAIEKAQNEVDTLIKESGEQAAY DSGVHGLHPEMIYYLGRLKYRTSYGQNVLKHSVEVSNIAGILAGEIGADVKLAKRGGLLH DIGKSIDHEVEGTHVELGVELARKYKESDAVINCIESHHGDVEPKSVEAILVQAADSISA ARPGARRETVESYIKRLEKLEEIATSFDGIEKSYAIQAGREVRIIVNPEQISEAEITITA RNIVKRIEDELDFPGQIKVNVIRETRAVEYAK >gi|289656148|gb|ADCS01000042.1| GENE 8 7015 - 7980 829 321 aa, chain + ## HITS:1 COG:CAP0080 KEGG:ns NR:ns ## COG: CAP0080 COG0582 # Protein_GI_number: 15004784 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Clostridium acetobutylicum # 10 321 8 317 323 215 41.0 1e-55 MINSNIVDDFLSYLSTTKGASQTTIKEYYYDIRIFLNFIFVRKGIIDEKSINEIDIDAIN IDILKSINKMDIYAYNSYLDKIRKNSNKTKYRKISSIRTFFNYLSNKIDVIEFNPIEDID MPKIEKRLPIYLTLEESKLLLKTVSESKIKDKYKTRDYAIVVLFLNCGMRLSELSGLNIK DVNNDNTLRVTGKGNKERTIYLNNACVNALKNYLNYRNDTDNKALFLSNRNTRLSNRQIQ RMVEKYINASGLDSEKYTVHKLRHTAASLMYQYGDADIRSLQEILGHESVTTTQIYTHIN DKQLKNTVDNNPLSNIDFDNK >gi|289656148|gb|ADCS01000042.1| GENE 9 8048 - 9304 877 418 aa, chain + ## HITS:1 COG:mlr4907 KEGG:ns NR:ns ## COG: mlr4907 COG2207 # Protein_GI_number: 13474103 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Mesorhizobium loti # 202 302 203 303 305 67 33.0 6e-11 MDRISELQTQYSSSFDKRKICSYDIEQINEPTKSIMHQESRFLFFTSGKGIIKINDVPYE VKPNSCVAIVPWVITEVTKVEEPMQFIKIVYNFNFLNRNIKTAYIDAKEQFNLFNEISNS PMIYCNEFEAKNFIKIMDDIKTEVGIESILDVKQEKILTNVFITNKIMEMLIWYIRIEQK VDLSTENNENPGFDERAVIFKYLYSHLSEKQTLKSVSSLFFMSESSLSKYCQKVTGHSFH DLLNEMRLVKTMDFLMYSDFSLNIIAELVGFNDASHLSKFFAKRIGTTPNQYRKINQNVV NMLNPEESNITYELIGHISNLFTENINEVETAKEFNMSVVEMNRILLYTIEKNFDEFIRY LRINYACELLKSTEENILDIAVTVGYNNAKTFNNHFLKLKGMTPSKFRKTVEIQYDYD >gi|289656148|gb|ADCS01000042.1| GENE 10 9435 - 10661 985 408 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149002994|ref|ZP_01827905.1| 50S ribosomal protein L33 [Streptococcus pneumoniae SP14-BS69] # 4 408 6 407 409 384 50 1e-106 MANINVTSEIKQLKKVLVHRPGDELLNLTPSTLEELLFDDIPDLQLAQEEHDRFTNILRD NGVEVVYLEDLMTETLDANEGLREKFLDEYLSETGVTDEKILALAKEYFEKITDTKAFVE KTMAGLTLKELGLFNEEDLHNMVVGKSYLAINPMPNLYFTRDPFASVGNGAVINRMYSVT RNRETIYADYIFRFHPEYKGNVPNLYGRKNEFHIEGGDTFNGNETTLLIGISQRTQYEAI KLLAKKLFFGDTENKIEKIYALKIDENRAFMHLDTVFTQIDVDAFTYHPAIIKEMEVKII TKDEANKDLHIETASGKLDEILAKALGIEKVRLIPCGGGDPIAAEREQWNDGSNTLAIAP GKVLVYKRNIVTNAVLRKEGIEVFELDASNLTVGRGGPRCMSMPLVRE >gi|289656148|gb|ADCS01000042.1| GENE 11 10698 - 11690 1213 330 aa, chain + ## HITS:1 COG:SA1012 KEGG:ns NR:ns ## COG: SA1012 COG0078 # Protein_GI_number: 15926752 # Func_class: E Amino acid transport and metabolism # Function: Ornithine carbamoyltransferase # Organism: Staphylococcus aureus N315 # 4 329 3 330 333 401 61.0 1e-111 MPVNLQGRSFLKLLDFSTEEIKYLLELSKELKRLKLARVPHKYLEGKNIALLFEKTSTRT RCSFEVGAYDLGMNVTYLEPGTSQMGKKESIEDTARVLGRFYDGIEYRGFSQAIVEEIAE KAGVPVWNGLTDDFHPTQMLADVLTVEENFGDLRGLNFTFMGDARNNVANSLMVVCAKLG MNFTACGPKELMPKAELVEQCREIAKENKCTITLTDDVKVGCTGAHVIYTDIWVSMGEPD EVWTERIKLLEPYRVDKKAMAMADENAIFLHCLPSFHDTNTTIGKEIAAKFNVTEMEVAD EVFESRQSKVFDQAENRMHTIKAVMYATLK >gi|289656148|gb|ADCS01000042.1| GENE 12 11872 - 12807 1352 311 aa, chain + ## HITS:1 COG:SA1013 KEGG:ns NR:ns ## COG: SA1013 COG0549 # Protein_GI_number: 15926753 # Func_class: E Amino acid transport and metabolism # Function: Carbamate kinase # Organism: Staphylococcus aureus N315 # 5 311 3 310 310 328 55.0 7e-90 MNKKRLVIALGGNALGNTPEEQLELVKETAKTIVDLAEDYDVIIGHGNGPQVGMINNAME FSSTNGGKTPYMPFPECGAMSQGYIGYHLTQSIQRELMLRNVKKEVACVVTQVVVDETDK AFSNPTKPIGSFMSKEEADKIAEEKGFVFVEDAGRGYRRVVPSPKPKKIVELNVVEQLVS AGDIVITVGGGGIPVIETNDGLKGVAAVIDKDSSSAKLALDVNADMLVILTAVDRVAINF NKPNQESLAEMTIEEAKKYIAEGHFAPGSMLPKVEACLDFVEKTSNGVALITSLQKAKAA LNGETGTILKK >gi|289656148|gb|ADCS01000042.1| GENE 13 12820 - 14328 2118 502 aa, chain + ## HITS:1 COG:SP2152 KEGG:ns NR:ns ## COG: SP2152 COG1288 # Protein_GI_number: 15901964 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 82 502 80 496 503 254 40.0 2e-67 MDRKKKRKSLTAFSILLIVLAVVCLVSVALQGNVIDPEIIKPLDPGRFGELIDAVDAGED ITVQGATFSNFIMAIPEGFIDAADLVVFIIALGGFIGVVMKTGALEAGVYHLVKKLKGKE ERLIVVLMFLFSLGGTTYGMAEETIGFYALITSAMVAAGFDTIVAVGTVLLGAGAGVLGS TINPFATGAAMGALSSVGIEPNTTLIMVLGLVLWLSTFAICCSFVLSYAKKVKKDKGSTI LSLQEQQVMKASFTNEDGVNLEFTSKHKRVLLVFAFAFVIMIASLISYQDLVFGGDEEAY LSALGWSDFLTGQPLGWWYFTELAGWFILASIGIGIMAKLSEKEFVDTFIAGSADLLSVG LIIAVARGITVVMGKTHLDFYILDHSSKLLSGVPGFIFTPAAYVIYLFLSFLVPSTSGLA ALSIPVMGSLTGALGFNPSVMIMVFCGGSGLINLFTPTSGVVMGGLGAAKVEYSTYMKWV FKLLVAVGIANVIVLTAAMMML Prediction of potential genes in microbial genomes Time: Fri May 27 07:41:42 2011 Seq name: gi|289656147|gb|ADCS01000043.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.43, whole genome shotgun sequence Length of sequence - 12051 bp Number of predicted genes - 8, with homology - 8 Number of transcription units - 2, operones - 2 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 41 - 1327 1286 ## COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance 2 1 Op 2 12/0.000 - CDS 1314 - 2231 933 ## COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase 3 1 Op 3 6/0.000 - CDS 2236 - 4095 1674 ## COG0323 DNA mismatch repair enzyme (predicted ATPase) 4 1 Op 4 1/1.000 - CDS 4092 - 6728 2128 ## COG0249 Mismatch repair ATPase (MutS family) 5 1 Op 5 1/1.000 - CDS 6721 - 8121 598 ## PROTEIN SUPPORTED gi|16079597|ref|NP_390421.1| hypothetical protein BSU25430 - Prom 8142 - 8201 9.2 6 1 Op 6 . - CDS 8203 - 9144 1008 ## COG0583 Transcriptional regulator - Prom 9187 - 9246 11.8 + Prom 9160 - 9219 11.2 7 2 Op 1 . + CDS 9258 - 10664 1549 ## COG1027 Aspartate ammonia-lyase 8 2 Op 2 . + CDS 10672 - 12036 1264 ## COG0114 Fumarase Predicted protein(s) >gi|289656147|gb|ADCS01000043.1| GENE 1 41 - 1327 1286 428 aa, chain - ## HITS:1 COG:SA1148 KEGG:ns NR:ns ## COG: SA1148 COG4100 # Protein_GI_number: 15926890 # Func_class: P Inorganic ion transport and metabolism # Function: Cystathionine beta-lyase family protein involved in aluminum resistance # Organism: Staphylococcus aureus N315 # 16 426 2 412 412 416 48.0 1e-116 MEKYKSLLLDNYNIDKSIINFVDECENLLIEKFNDRKKISQYNQVKILNSMQKNKLQATD FNWTTGYGYGDIGREKVESIYKDIFNTEDALVRPNIVSGTHAISLALFGILKPNDHFIYA SGTPYDTLLKVIGVNGTEYGNMLEMGIKYSEIPLKDNLVDIDGLKDEIRPNTKLVCIQRS TGYSNRRALTMDEIKKSIELIKEINKDIIIFVDNCYGEFTDINEPTDFGADLMAGSLIKN PGGGLAYSGGYIVGKHNLINRISNRLTAPGIGKECGLSFGMTRQILQGLFISPKVVEDAI NSAQLFSCVFEKLGYNCIPKTDDIRSDIILSIELKNPEKLKQFCRAIQEASPVDSHFLPE PWDMPGYEDKVIMAAGDFIEGSSIELSADGPMREPYFVYYQGGLTYYHAKFALLKVLSNF KSNGFLDI >gi|289656147|gb|ADCS01000043.1| GENE 2 1314 - 2231 933 305 aa, chain - ## HITS:1 COG:BH2366 KEGG:ns NR:ns ## COG: BH2366 COG0324 # Protein_GI_number: 15614929 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA delta(2)-isopentenylpyrophosphate transferase # Organism: Bacillus halodurans # 2 295 3 299 314 271 45.0 9e-73 MDNLLILTGPTGIGKTELSLSISRKYNCEIISADSMQIYKEMDIGTAKININETDIPHYM IDVVYPCYDFSVADFKKQSVSLISEINKNGKLPFIVGGTGLYINSLVYDLSFQRVKKNEE YRNYLESLINKNGVLYLYEKLKEKNINIANKIDKNNRNRIIRALEILEFSSDGEYENLRK ENNNYNLLFLGINMKREKLYEKINNRVDLMIEQGLVQEVKFLLNKYKNCELNSFKAIGYK EIISYLKSELTLDEAIDLIKKNSRHYAKRQITWFKRDSRIIWFDKDDKDLEEKIMNTIGE KFGKI >gi|289656147|gb|ADCS01000043.1| GENE 3 2236 - 4095 1674 619 aa, chain - ## HITS:1 COG:CAC1836 KEGG:ns NR:ns ## COG: CAC1836 COG0323 # Protein_GI_number: 15895111 # Func_class: L Replication, recombination and repair # Function: DNA mismatch repair enzyme (predicted ATPase) # Organism: Clostridium acetobutylicum # 1 618 1 620 622 369 37.0 1e-101 MSIILLDEATIAKIAAGEIIENPASIVKELLENSIDAKAKNIIVEVRGNIGSYIRITDDG IGMDKDDLNLAFLRHSTSKLKTAEDLHNIVSLGFRGEALASISHISKIEVLTKTKDDLSG TRAEIEDGKIVKMNSIGLPVGTTFYVKDVFYNMPVRKKYLKLDNTEFNYIYEVVQKIALG NPDISIKLIRDNKVILNSSATDNLKNHIFSILGREVASNLIEGNFSSNSYKIKSFISDNK LYRSNRYHQYIYINGRYVKNLDISKEIEKHYYSLIPLNRYPVFLLYIDIDPILVDVNVHP KKHEVKLSKENNILAILSDLVDETLYPNRSIINPIKEEPKERNINIFEMFKEVDSEQNTQ NKTENFIYNNSIEEFESKTNAFFEEQKHIYNNTNNTCENNEDFKNINSSLENSNTNNNED SSKIDCDLLNTRLVGILFKTFIILENYSKGRCYLIDQHAAHERILYEKFKEQFENSEVLS QILITPEIIELSVEEKEKLENNYELFKSLGFEIEEFGENSIVIRQVPMIFGHGVRYDFIH DTIDSLDKIKQSSYEVDSYKIMKKACKAAVKAGDELSDMEVQALIKSLLECKNPYTCPHG RPTIIELKSLEIEKLFLRE >gi|289656147|gb|ADCS01000043.1| GENE 4 4092 - 6728 2128 878 aa, chain - ## HITS:1 COG:CAC1837 KEGG:ns NR:ns ## COG: CAC1837 COG0249 # Protein_GI_number: 15895112 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Clostridium acetobutylicum # 8 877 3 869 869 669 44.0 0 MSKKEEKLTPMMEQYLEIKKKHKDEILFFRLGDFYEMFFEDAIIASKELEITLTKRSSTG ENTPMCGVPYHVADSYISKLINKGYKVAICDQMEDPKLAKTIVKREVTKIVTPGTFTDFN YLKKDENNYLLCTVINNNSIYLSYTDYSTGELYTTSKTFFNFNELLDFFINECYRINPSE ILINRIKNKKLNSILTFSNLYINYIEDFYESIHDIEFTNEEISLINNNIFNDIENLKTTN KISDYSSIYILIKYLIKTQKDSLGHLNSIIYYNSDEYLLLDESSKRNLELVKGINTGNKS QSLLEILDKTKTSMGSRELKKWIEEPLLNECAINDRFDKINELKRDLLLLDDLKLQLKEI YDIERLSVKISNRTITPKEIISLLISLNSIKNIKNILISSDNLTLIKIAESLDSLASIRK RIADIIIDDPPVNIDENRFIKTGYSTELDELFAASEKGREWILSLEDKERKRTSIKGLKI KYNKILGYFIEVTKSYSNQVPKDYIRKQTLVGSERYFSIELKEMESKLLSSKGEAFKLQM EIYKSLKEFLANNIIQIQKVAKNISKLDVLVSLCTVAIDNNYVRPSINKNGIIEIKNGRH PIVELKLQEELFVPNDTLLDTNNNLIHIITGPNMAGKSTYMRQVAIIVIMAHMGSYVPCE SANISLVDKIFTRIGASDNLAKGDSTFMVEMKEVANIVKNATKNSLIILDEVGRGTSTYD GLSIAWALVEYLVTNIHAKTLFATHYHELVNLSNKYNNINNLTISVEKQNDSIVFLRKIV EGFSNNSYGIDVAKLAGINDFIIQRSNEILEFIQNNEDMNIKNNIAKKDKIKVSQKTIFD MKKDEFLKKLSTLNINSLSPIEALNLLNDIINEVNDII >gi|289656147|gb|ADCS01000043.1| GENE 5 6721 - 8121 598 466 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|16079597|ref|NP_390421.1| hypothetical protein BSU25430 [Bacillus subtilis subsp. subtilis str. 168] # 35 452 8 423 451 234 32 2e-61 MDNYDLIRDSKENIDEYIKNVEKNYGHNKRAKIITHGCQMNEHDSEKIEWILEKMGYEII QDLADSDLVVLNTCSVRHSAEDKVYGQLGVLKHLKKKKNNLKVAVCGCMMQRKESRNYVI DKFENVDIIFGTNNIWKLPELLLKNYETNKLSMDIEENFSGIDDTLGANRLYPYKSYVNI MYGCNNFCTFCIVPYTRGREQSRDPRDIIREIELLAKNGTKEVTLLGQNVNSYGKNLQKP ISFANLLYRINEIDGIDRIRFMTSHPKDISDELIYAYRDLDKLCNFLHLPVQSGSSRILK LMNRKYSKEDYLKKIDKIKTVNPNIALCTDLMVGFPGETEEDFMETIDLVKKVQYDTSFT FIYSKREGTFAAKSNEQIPDKIKHDRFQKLIDVLYPIQFEKNKKNIGRNVKVLVEDVSKN NSENVSGRTEEFKLVNFRADKNKIGKIVNVKITDTNTFSLTGEIIE >gi|289656147|gb|ADCS01000043.1| GENE 6 8203 - 9144 1008 313 aa, chain - ## HITS:1 COG:FN0603 KEGG:ns NR:ns ## COG: FN0603 COG0583 # Protein_GI_number: 19703938 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Fusobacterium nucleatum # 1 311 1 311 314 222 40.0 8e-58 MFRGMEYVYEVYKEKSFSKAAKNLFISQPSLSAAVKKIEVELGFDIFDRSTKPIGLTEFG EEYILAAKKILEIEENFDNYLNDIGDLKAGHISIGGTNLFTSYVLPPILSEFSKKYPKVE LNIVETNTANLEKYLYDGYLDVVIDNYAFDESIYEKQFYEKDNIILAVPAKFKSNLEAED YRISYDEIISGKYLSDEIPILPLKIFKDDPFIFLKEGNDTRMRADKICSREKVEPNILLE LDQQMTSFNLTCFGMGVSFISDLILKNVGKKDNIYLYKLESNDSERDISFFYKKYRYIKK STKEFLKIAKNLK >gi|289656147|gb|ADCS01000043.1| GENE 7 9258 - 10664 1549 468 aa, chain + ## HITS:1 COG:CAC0274 KEGG:ns NR:ns ## COG: CAC0274 COG1027 # Protein_GI_number: 15893566 # Func_class: E Amino acid transport and metabolism # Function: Aspartate ammonia-lyase # Organism: Clostridium acetobutylicum # 3 466 2 465 465 587 61.0 1e-167 MNEYRLEHDSVGEKKIPSEAYYGVHSLRACENFAITGHKLHDELINSISEIKKACAITNM EVGILSKDIGNAIVSACDEIISGNFHDQFIVDPIQGGAGTSTNMNANEVIANIALEKLNS IKGNYKLINPNDHVNMGQSTNDVYPSCGKLTTLKLISKTIDKLILLNSYFELKSKEFKDV IKMGRTQLEDAVPITLGQEFNAYSTAIKRDIERLKRVSNELRILNLGGTAIGTGLNADVN YVKNVVPNLNKITNLNLVQAEDLIDATQNLDCYVSVSGVIKSCAVNLSKISNDLRLMNSG PRAGIGEINLPARQNGSSIMPGKINPVIPEVVNQVAFNIIGNDMTITMAAEAGQLELNAF EPVIFFNLFESLETLSGAIITLAENCIKDITANKEECKHLVEHSIGMITAINPYVGYEKA AEIAKEALKTGQSIKELIIRDNLIPIDEIDDILNPFKMIKPGIISKDR >gi|289656147|gb|ADCS01000043.1| GENE 8 10672 - 12036 1264 454 aa, chain + ## HITS:1 COG:HP1325 KEGG:ns NR:ns ## COG: HP1325 COG0114 # Protein_GI_number: 15645938 # Func_class: C Energy production and conversion # Function: Fumarase # Organism: Helicobacter pylori 26695 # 1 454 1 459 463 586 64.0 1e-167 MEYRIEKDSMGEIKVPSNVYWAAQTQRSYENFLIGTDIVPLEVIHSLAELKKACAEVNFL NSNLSEKKYNLITKVCNEIIDNKLNSHFPLMVFQTGSGTQSNMNVNEVIANRANEIAKEK LIHPNDDVNMSQSSNDTFPTAMHISSTIEINKRLIPAINSLIDTFKHLEEKYYDIIKIGR THLQDATPIKFSQEISGWRGMLEINKNMILEASNGLLNLAIGGTAVGTGLNAPKNFGENV SEILSKNLGFKFKSDFNKFHALSSKDEIVYAHGALKALAANLMKIANDIRWLASGPRCGL GEINIPANEPGSSIMPGKVNPTQAEAMTMVCAQVMGNDMTIGFAASQGNFQLNVFMPVII YNFLKSVRLLSDTINSFNKNCASGIEPNVEKMNYNLYHSLMLVTALSPQIGYDNAAKVAK YAYNKNCSLKDACKELNLMSSEDFDKYIKPEKMV Prediction of potential genes in microbial genomes Time: Fri May 27 07:41:52 2011 Seq name: gi|289656146|gb|ADCS01000044.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.44, whole genome shotgun sequence Length of sequence - 31353 bp Number of predicted genes - 35, with homology - 33 Number of transcription units - 11, operones - 5 average op.length - 5.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 9 - 527 507 ## CTC00833 putative tryptophan transport protein - Prom 574 - 633 9.7 - Term 796 - 851 -0.2 2 2 Op 1 4/0.000 - CDS 874 - 1392 669 ## COG2065 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase 3 2 Op 2 15/0.000 - CDS 1389 - 2279 256 ## PROTEIN SUPPORTED gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit 4 2 Op 3 . - CDS 2281 - 2775 315 ## COG0597 Lipoprotein signal peptidase 5 2 Op 4 . - CDS 2772 - 3545 361 ## PROTEIN SUPPORTED gi|227891037|ref|ZP_04008842.1| ribosomal protein S4e 6 2 Op 5 14/0.000 - CDS 3539 - 3982 683 ## COG1799 Uncharacterized protein conserved in bacteria 7 2 Op 6 . - CDS 3995 - 4681 710 ## COG0325 Predicted enzyme with a TIM-barrel fold 8 2 Op 7 . - CDS 4695 - 5945 1005 ## Clos_1406 hypothetical protein 9 2 Op 8 1/0.000 - CDS 6001 - 7002 1084 ## COG0240 Glycerol-3-phosphate dehydrogenase 10 2 Op 9 2/0.000 - CDS 6999 - 7598 550 ## COG0344 Predicted membrane protein 11 2 Op 10 . - CDS 7595 - 8914 1563 ## COG1160 Predicted GTPases - Prom 8939 - 8998 8.4 + Prom 8941 - 9000 7.9 12 3 Op 1 12/0.000 + CDS 9035 - 9808 700 ## COG2966 Uncharacterized conserved protein 13 3 Op 2 . + CDS 9814 - 10254 441 ## COG3610 Uncharacterized conserved protein - Term 10210 - 10255 1.4 14 4 Op 1 . - CDS 10267 - 11184 1000 ## COG1493 Serine kinase of the HPr protein, regulates carbohydrate metabolism 15 4 Op 2 . - CDS 11171 - 12976 1642 ## COG0322 Nuclease subunit of the excinuclease complex 16 4 Op 3 . - CDS 13045 - 14808 1647 ## COG0006 Xaa-Pro aminopeptidase 17 4 Op 4 . - CDS 14871 - 15461 276 ## CTC00431 hypothetical protein 18 4 Op 5 . - CDS 15468 - 15896 710 ## COG0716 Flavodoxins - Prom 15943 - 16002 13.2 + Prom 15905 - 15964 9.3 19 5 Tu 1 . + CDS 16022 - 16648 598 ## COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain - Term 16628 - 16692 21.2 20 6 Tu 1 . - CDS 16709 - 16981 464 ## COG2088 Uncharacterized protein, involved in the regulation of septum location - Prom 17113 - 17172 9.6 + Prom 17026 - 17085 13.6 21 7 Tu 1 . + CDS 17157 - 18542 1644 ## COG0773 UDP-N-acetylmuramate-alanine ligase + Term 18551 - 18589 0.2 - Term 18526 - 18585 11.1 22 8 Op 1 24/0.000 - CDS 18586 - 19626 881 ## COG0208 Ribonucleotide reductase, beta subunit 23 8 Op 2 . - CDS 19636 - 22167 2536 ## COG0209 Ribonucleotide reductase, alpha subunit 24 8 Op 3 . - CDS 22168 - 22347 148 ## 25 8 Op 4 . - CDS 22334 - 22885 535 ## Amet_3673 hypothetical protein 26 8 Op 5 . - CDS 22899 - 22985 93 ## 27 8 Op 6 . - CDS 22996 - 23421 551 ## FMG_1524 hypothetical protein 28 8 Op 7 . - CDS 23436 - 24329 651 ## COG1242 Predicted Fe-S oxidoreductase 29 8 Op 8 . - CDS 24319 - 24762 437 ## COG1225 Peroxiredoxin 30 8 Op 9 . - CDS 24768 - 25088 530 ## gi|299144108|ref|ZP_07037188.1| conserved hypothetical protein 31 8 Op 10 . - CDS 25108 - 26559 1736 ## COG2195 Di- and tripeptidases - Prom 26594 - 26653 9.9 - Term 26595 - 26639 3.2 32 9 Tu 1 . - CDS 26660 - 28000 1201 ## CTC00421 hypothetical protein - Prom 28025 - 28084 13.3 33 10 Op 1 . - CDS 28093 - 28854 830 ## COG0760 Parvulin-like peptidyl-prolyl isomerase - Term 28880 - 28908 -1.0 34 10 Op 2 . - CDS 28916 - 29113 389 ## COG1278 Cold shock proteins - Prom 29211 - 29270 11.0 + Prom 29275 - 29334 8.8 35 11 Tu 1 . + CDS 29508 - 31334 2274 ## COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains Predicted protein(s) >gi|289656146|gb|ADCS01000044.1| GENE 1 9 - 527 507 172 aa, chain - ## HITS:1 COG:no KEGG:CTC00833 NR:ns ## KEGG: CTC00833 # Name: not_defined # Def: putative tryptophan transport protein # Organism: C.tetani # Pathway: not_defined # 1 162 1 159 169 98 41.0 7e-20 MKTKNLTIAAVLLALGSILHMIVPGIINGMKPDFLLLMMFISILFNLEIRSVFTIGFVAG IIAAMTTTFPFGQIPSILDKLGSSLLVYVMFNLALKKYKINNIIMFIICFLGSIFSGFIF LYSALIISGLPEGATLSLLMVLVVFPTSLFTGVFGIIFYNIMNFTNKKHLMV >gi|289656146|gb|ADCS01000044.1| GENE 2 874 - 1392 669 172 aa, chain - ## HITS:1 COG:BH2541 KEGG:ns NR:ns ## COG: BH2541 COG2065 # Protein_GI_number: 15615104 # Func_class: F Nucleotide transport and metabolism # Function: Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase # Organism: Bacillus halodurans # 1 171 1 177 180 164 49.0 8e-41 MKNIIMDEMAIKRAISRISNEIIEKNKGTEDLILIGVIRRGEDIAKRISKKIFEIENRKI DVYPIDVTNFRDDIEASAKINNNFFIPVNGKKIILVDDVLFTGRTVRAAIDAILSKGRPK KIELVSFIDRGHRELPIRPDFIGKNLPTSMSEKVVVNIIEVDHIDQVYIEKI >gi|289656146|gb|ADCS01000044.1| GENE 3 1389 - 2279 256 296 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit [Lactobacillus helveticus DPC 4571] # 77 289 83 284 285 103 32 2e-21 MVKVNYVCESDNIRIDRYLVEKLNINRSQIKKYIDFGNILINNSVVKAGYMTKIGDIIDV SYEDEILLLPEEIDFKIIYEDEHIAVISKPQNLVVHPGSGNYNHTLVNGLLFKFKNLSNC GDKLRPGIVHRLDKDTSGLMIIAKTNLAYLKLVKDFKESKIRKTYIAVVEGKTDEFGIIN EPIGRDPKNRKKMAVIYENSKNAITEYKKIREFNNFSLISINILTGRTHQIRVHLSYIKH PVLGDLTYGNKNKYKIDKQMLHAYRLKFNHPITGEELSFEDDIPNRFVKFLSRKDI >gi|289656146|gb|ADCS01000044.1| GENE 4 2281 - 2775 315 164 aa, chain - ## HITS:1 COG:CAC2115 KEGG:ns NR:ns ## COG: CAC2115 COG0597 # Protein_GI_number: 15895384 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Lipoprotein signal peptidase # Organism: Clostridium acetobutylicum # 23 162 11 150 154 82 36.0 4e-16 MKILGLFIGGIMGVIIFSFFLFIIDQLSKYFVVNFLKDKPPLVVIKNFLNFFYLENRGAA FGIMQDKGIFFTIITVIVVCVLTGILFKNYNNKSKPLKFAVALILGGTIGNFVDRIRLKY VIDFISVKIFNYDFAVFNLADSFIVIGTIILVIIILLYENPKRK >gi|289656146|gb|ADCS01000044.1| GENE 5 2772 - 3545 361 257 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227891037|ref|ZP_04008842.1| ribosomal protein S4e [Lactobacillus salivarius ATCC 11741] # 15 255 12 257 262 143 32 1e-33 MVMKIDRNAILNSVDEDKLFEIRKVIDKIEISANRHSIQSTDFLDPYERKIVISILNKFD DISYSIDGGYSNSERAVIYIFPNYMYDIDFDDVEVLSFKNNFEFTHKDVLGSILSLGIDR RKVGDIVFNSNYCHIFVKSEIFKYLRFNLGKVKRNNIKFEKAEFIEPTLTYDEYTFIISS LRLDTFLSSVLKLSRTAASNLIESDKVKVNFRKESKGSNKVNIGDLISVRGFGRIFFDNI EGYTRKDRYIVKVKIPK >gi|289656146|gb|ADCS01000044.1| GENE 6 3539 - 3982 683 147 aa, chain - ## HITS:1 COG:CAC2120 KEGG:ns NR:ns ## COG: CAC2120 COG1799 # Protein_GI_number: 15895389 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 56 147 63 155 157 67 37.0 1e-11 MADIMNKVKKVFGFSEEYDYDDYEEETYHEEVADIKETAPKITRSKRNSNVLNLNASDMI ITVHEPLSYDESPNIVDDLREHKSVVLNFEQLDIDVKRQIFDFVSGALYALDGKIQKVNK DIFVLAPSNVEIDGLKEELKSTGMFPW >gi|289656146|gb|ADCS01000044.1| GENE 7 3995 - 4681 710 228 aa, chain - ## HITS:1 COG:CAC2121 KEGG:ns NR:ns ## COG: CAC2121 COG0325 # Protein_GI_number: 15895390 # Func_class: R General function prediction only # Function: Predicted enzyme with a TIM-barrel fold # Organism: Clostridium acetobutylicum # 25 227 16 218 221 158 47.0 8e-39 MSIKDNYEFILTEIENSRKVSITGEEVKLIAVSKMRTIDEMKEAYNLGIRDFGENKVQEL KEKFLNFDDINFHMIGNLQTNKVKYIYDKVTLIQSLDRKSLLEEINKRADIKNIDVDCLV EINIAEESQKGGVPYTEALNFIETCIDYKNIKIKGIMTVAPDTSDKLFLRECFKKMFILK EKIIKLNYDEVEMKYLSMGMSGDYKIAIEEGSNMVRIGTSIFGKRNYK >gi|289656146|gb|ADCS01000044.1| GENE 8 4695 - 5945 1005 416 aa, chain - ## HITS:1 COG:no KEGG:Clos_1406 NR:ns ## KEGG: Clos_1406 # Name: not_defined # Def: hypothetical protein # Organism: A.oremlandii # Pathway: not_defined # 16 413 19 429 432 91 23.0 5e-17 MRIKKNKKELFFRKRIIFVLIFLIFLFFLSRAFSGKIYRSYKTVFPTYTNYRKNLEVVGF NILDEKVYSAGDDGISLFNASEGQKVPVGFEIASINLMNDTSGLKDELIKVNAALNYKLN SSNNSENSISDFNVEKLQNDLKQNKFSSAIADINDIDLNSKDNISISELTELMKFTQEEL AEKKQQLLLSISKSNIEYTSDFSGIVSYKIDGLESYYTIDNLEKINYAYLQKYNKVTKFE SRSQVKKGDKLFKLINNLSYYLALKIEDNKKIDKFKVGDTLSLKFNFETLKGKIIKIEKE NNKSVIILSMSDMFNSIYSDRINNFKIILVDKKCFEIPKSAIVKRNNLFGVYVQEIHGLV RFIPIIVISPTQDYSYVSKGDKNGYITIGDKSYRTISINDAIIVNPKQIDESQILN >gi|289656146|gb|ADCS01000044.1| GENE 9 6001 - 7002 1084 333 aa, chain - ## HITS:1 COG:BS_gpsA KEGG:ns NR:ns ## COG: BS_gpsA COG0240 # Protein_GI_number: 16079340 # Func_class: C Energy production and conversion # Function: Glycerol-3-phosphate dehydrogenase # Organism: Bacillus subtilis # 3 330 4 336 345 330 51.0 3e-90 MNIAILGGGSWGTAISRLLSNKGYNIKFYVRNNDTVLDINNNHRNSKYLPNIEIKNVKAS SNLNECINDTEIIIMAVPSHSFRKVLIEVKKKVGNQIIVNLSKGIEIDSLKRMSEISKEI LPNNSYVCLSGPSHAEEVGLDIPTTVTVASEDINAAKTIQKIFATDNFRVYTNSDLIGVE IGGALKNIIALAAGMSDGLKYGDNTKAALVTRGIYEMSKLGMALGANPQTFNGLSGIGDL IVTCTSMHSRNRRAGILIGEGNSSEEACKIVGQVVEGIKTTKSAYELSKKYNVNMPITHK LYEVLYSGLDPREAVLNLMTREYKEEIEEIFFN >gi|289656146|gb|ADCS01000044.1| GENE 10 6999 - 7598 550 199 aa, chain - ## HITS:1 COG:aq_676 KEGG:ns NR:ns ## COG: aq_676 COG0344 # Protein_GI_number: 15606088 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Aquifex aeolicus # 1 193 1 191 192 112 38.0 4e-25 MTVLITIIISYLVGSISGSYIIGKVFLNKDVRKYGSGNAGTTNAIRVFGIKWGIITFLID FLKGIIIVLLSKNIFKVNETLVLINILFGIVGHDYPFYMRFKGGKGVATTLGALLIMNFQ LTFFCFLIWIFVTMASKMVSLGSIFFFVSIIVLFLSLSSYNNLGLSIIFIIGLLGIYKHR SNIKRIINGTENKIGAVKK >gi|289656146|gb|ADCS01000044.1| GENE 11 7595 - 8914 1563 439 aa, chain - ## HITS:1 COG:CAC1711 KEGG:ns NR:ns ## COG: CAC1711 COG1160 # Protein_GI_number: 15894988 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Clostridium acetobutylicum # 1 435 1 436 438 484 54.0 1e-136 MEKPIVSIIGTPNVGKSTLFNKIVGKKISITEDTPGVTRDRIYSDATWLNKQFLLVDTGG LDLKDEDIFMSSIKAQVDLALDMSDVIIFLTDGIKGVSSNDLEISNYLRKSNKKIILAVN KFDSKDAKNNYYDFFELGLGTPITISSEQGSGVGDLLDEVIVDFKDQEDDFFDDDIRVTF IGKPNVGKSSLINRILGEERVIVTDIPGTTRDAIDSKFNFNGENYVFVDTAGLRKKKKIY ENIERYSVIRTLTAIERASVCVLVIDAYEGVSEQDSKIVGYAHDNNKAIIVAVNKWDLIE KDNSTMKKFESDIRKRLPFINYAPILFISAQTGQRVDKLLEMISLVNNNYNHRIKTGVLN DILNRAVLMNQPPSDKGKRGKLYYGSQVSVRPPKFLISVNDKDLFHFSYVRYLENQIRDA YSFDGVPLVLLLKNRGERE >gi|289656146|gb|ADCS01000044.1| GENE 12 9035 - 9808 700 257 aa, chain + ## HITS:1 COG:CAC2265 KEGG:ns NR:ns ## COG: CAC2265 COG2966 # Protein_GI_number: 15895533 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Clostridium acetobutylicum # 12 256 4 248 257 139 36.0 4e-33 MERVLKDLNDAKRLLNLAIYSGQLLIMYGAEIYRAEDTVQRICDSMENVSSADAYVLPSG IFVSIEFEGEIVTIFKKVHSSATNLNKIDKINSFSRKFVKENISYEKGMNILKNIENESP MKEWKKNLSAAWAAAFFSLLFGGNIKDFFSTFIITGIMSFTFNKLCFFNFSFVINNFIGA FVASILAVFATNFGFSDNSDMIIISAIMILVPGVSATNAVRDIMNGDFLSGLMGLTKAIF LALSIALGVGVVLKFFR >gi|289656146|gb|ADCS01000044.1| GENE 13 9814 - 10254 441 146 aa, chain + ## HITS:1 COG:SA0699 KEGG:ns NR:ns ## COG: SA0699 COG3610 # Protein_GI_number: 15926421 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 131 2 132 164 73 33.0 1e-13 MYYIIQFLIAAFTTMGFTFYFNCPKRAIPISCFFSGISWLIYKIIVIKYQDYFLAGFTSA FILGLIGESAARIMKNPATIFILPGLIPLVPGAGMYYSMYYLIYQNYPSFKMEAIKTFYI AASLAIGIVAASTFTKATYAILKYKK >gi|289656146|gb|ADCS01000044.1| GENE 14 10267 - 11184 1000 305 aa, chain - ## HITS:1 COG:lin2626 KEGG:ns NR:ns ## COG: lin2626 COG1493 # Protein_GI_number: 16801688 # Func_class: T Signal transduction mechanisms # Function: Serine kinase of the HPr protein, regulates carbohydrate metabolism # Organism: Listeria innocua # 2 297 3 298 312 249 42.0 5e-66 MEGIKLKKIVEDLNLQKIFLANNYENVSILTANLNRPGLQLAGYYNKFDSDRLQILGEQE WTYIDEMELEKRYKSLKKLFEYNIPALIFSGNNWIHDEVIELAKINNVSILRTTDSFIKF AGRFQSYIEIELAPTIRKHAVLLDVYGVGVLITGKSGIGKSETALDLISKGSKLISDDSV IIKKIDDRLIGKSPSITKHFMEIRGVGIIDIQRIFGIGYVMESKEIEMIVNLENWDDSKE YDRLGIDNNYEEILGKKIPIFSIPVKPGRHISLIVEVATKNFKQKEMGYNPAYELNKRIL QSSKK >gi|289656146|gb|ADCS01000044.1| GENE 15 11171 - 12976 1642 601 aa, chain - ## HITS:1 COG:CAC0508 KEGG:ns NR:ns ## COG: CAC0508 COG0322 # Protein_GI_number: 15893799 # Func_class: L Replication, recombination and repair # Function: Nuclease subunit of the excinuclease complex # Organism: Clostridium acetobutylicum # 1 595 20 619 623 522 48.0 1e-148 MKDINDNIIYVGKAKSLRKRIRQYFSSYGNSNVKVKTMVSNINDFEYIIVENEIESLILE SNLIKDNHPKYNIVLRDDKQYPYIKITINERFPRVLRTRLILNDGAKYFGPYPAASAVNE AIDIFERLFKLRTCSLNLEKNNIRYRPCLNYFIGKCLAPCHENVDEDKYNDIINEITEFL SGKSKNIIHILEENMNMESKKLNFEVAANFRDGIKALEILNEKQIISNTDFSENRDVIGV ARGIEQILVQIFFIRAGKIIGREHYIIKDYLNNDIESILNAFIKQFYSGVAFIPREIVVE SEPYDKDVLESYLSDKRSGKVSIISPKRGDKKDLVIMAKKNALDMISKYEDNYSEKIKKN TYALKEIQNLLELEVFPKRIESYDISNISGVQSVASMVVFEDGIAKKSDYRKFKIQSVVG PDDYASMKEVLNRRFIRGIDEKNKNIVSSFSNFPDLIMLDGGKGQVNIVLEILLNLGINI PVCGLVKDEFHTTRGIIYNNREFNLKINSNGYRMIYKIQEEVHRFAINYHRLLRSKNLFK SELDLIDNIGKKRKEYLMQHFKSLDKIKNAELDELLEVKGINSKAANSIYLYFHGGEHGR N >gi|289656146|gb|ADCS01000044.1| GENE 16 13045 - 14808 1647 587 aa, chain - ## HITS:1 COG:FN0453 KEGG:ns NR:ns ## COG: FN0453 COG0006 # Protein_GI_number: 19703788 # Func_class: E Amino acid transport and metabolism # Function: Xaa-Pro aminopeptidase # Organism: Fusobacterium nucleatum # 7 585 11 584 584 465 45.0 1e-130 MVLKVLRNEMKKNKIDCYIIPTLDPHSSEYLPDYYKERQFVTGFTGSAGTAVVTNSDAFL WTDGRYFIQAESQIKDNGFKLMKIGIEGYPTIIEWLSDNLKSGSVLGLNAKYYLQSDFEN LELKLNKNNISIIDIDLIKDIWQDRISLPNSKVFIHEHKYSGRTSEQKIEDVRKVLSENN ANLTIISKLDDIAWLFNIRCNDIEHTPVVISYAIVEMEKVYIFINKDKLDDNVIKYLSSF SEIINYDDVFEHVKKYFETNIYIDKSSINHKLFSEINESNNVISGDDLIEGLKTVKNPIE IQNIKNAHIRDGVALTKFIYWIKRIVKDEIITEYEAAQKLRKFREEQALFTDESFETISA YGKNAAMMHYSASEEKASVIENKGFLLVDSGAQYLDGTTDITRTIAVGELTDEEITDFTY VLKSHFVLSSAVFLKGTKDSALDAIARYPLWKIHSDYKCGTGHGVGYFLGVHENPPWLSP RALGSEIKEGMIFSDEPGVYKEGKFGIRTENILEVVKDIENESGIFLKFNLISFAPIERE AINVNLLDDFELKALNEYHKEVYEKISPFLNSEERSWLYEVTKEMSK >gi|289656146|gb|ADCS01000044.1| GENE 17 14871 - 15461 276 196 aa, chain - ## HITS:1 COG:no KEGG:CTC00431 NR:ns ## KEGG: CTC00431 # Name: not_defined # Def: hypothetical protein # Organism: C.tetani # Pathway: not_defined # 1 190 1 189 209 118 37.0 1e-25 MYKKDFLNFYIFLEQYDDLNFLIAMLKFNTAPTRAKLKLGTMVNLTDSKRKLKMLWKANR QYFSEILNLDFVELRENEKSVLVYFYDKKRLKNKLKEDKITKFLKDFEYSKCGNYKDYLE HLKNRFLENDSCPNEIGIFLGYPLRDVYKFHCKNCKCKLTGYWKCYTNVDSSKRAFERYD REKLKTIEKIYLENAI >gi|289656146|gb|ADCS01000044.1| GENE 18 15468 - 15896 710 142 aa, chain - ## HITS:1 COG:CAC0587 KEGG:ns NR:ns ## COG: CAC0587 COG0716 # Protein_GI_number: 15893876 # Func_class: C Energy production and conversion # Function: Flavodoxins # Organism: Clostridium acetobutylicum # 1 142 1 142 142 120 48.0 6e-28 MSKVNVIYWSGTGNTEAMANAIVKGAQDAGAEVKLIPVGEATEDDVKEVNNVAFGCPAMG AEELEETEMRPFMDKVNPLLSGKNVVIFGSYEWADGEWMRLWQEEIEATGCKLIADGFAA YDNPDEDAIEECEALGKELANA >gi|289656146|gb|ADCS01000044.1| GENE 19 16022 - 16648 598 208 aa, chain + ## HITS:1 COG:BH1123 KEGG:ns NR:ns ## COG: BH1123 COG4753 # Protein_GI_number: 15613686 # Func_class: T Signal transduction mechanisms # Function: Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain # Organism: Bacillus halodurans # 100 202 419 521 526 79 39.0 5e-15 MLNHLSLASQLKSSTFNKALDIYHSDVKKFISSNQTAKEYLVHLNMFLYTYFLVEYNKDL EVFALQNERYIYSENNIHVLIELGEIILKGYTNKFSSELNQNDHELIEKALDYINKNYNK KITLQTVANKLHISRNYLCHLFKTKTGYKFCEYINLQRVNKAKTLIEENKKTFEFISFDC GFSSQSHFSTTFKKYMGLTPNEYKKELG >gi|289656146|gb|ADCS01000044.1| GENE 20 16709 - 16981 464 90 aa, chain - ## HITS:1 COG:CAC3223 KEGG:ns NR:ns ## COG: CAC3223 COG2088 # Protein_GI_number: 15896470 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Uncharacterized protein, involved in the regulation of septum location # Organism: Clostridium acetobutylicum # 1 85 1 85 95 110 68.0 5e-25 MKITDVRIRKLPDEDKMKAIVSVTFDNEIVIHDIKIIEGTESLFIAMPSRKLPNGEFRDI AHPINAEARKAIEEAVFAKYEEIVNQPSEV >gi|289656146|gb|ADCS01000044.1| GENE 21 17157 - 18542 1644 461 aa, chain + ## HITS:1 COG:CAC3225 KEGG:ns NR:ns ## COG: CAC3225 COG0773 # Protein_GI_number: 15896472 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate-alanine ligase # Organism: Clostridium acetobutylicum # 12 458 11 456 458 401 49.0 1e-111 MFDFIINKHKYRHIHFIGIGGISMSGLAEIMLNEGYVVSGSDHKESIITKKLENNGAKIY NSHSADNLRGVDLVVYTDAINIENEELKAAIKLKIDIIDRASFLGALMKNYDTSIAISGT HGKTTTTSMVTEIIKNLNSNPTILLGGQLDDINGNVKIGDKKLFLTEACEYKANVLKYFP TTAVVLNIDEDHLDYFDNIEHIIKTFKGFVNNLNSNDKLILNLDDENSKMLLNDKKENVI TFSTKSPANYNAKNITYSLDGYPSYDLYYNEKFIGNVELSIMGNHNVSNSLAAIAASVEN GVSFKDAINGIKIYKGVHRRLEYKGKYNDAIIEDDYAHHPTEIKASLNALKNSCKGSLYC IFQPHTFTRTKLLLDSFSKSFNNADVVIITDIYAAREKDYGDIHSKTLCDAINSNGGNAF YLKNFSDVCEYLKKNLKENDMAVTMGAGDVYKIGEALLEDK >gi|289656146|gb|ADCS01000044.1| GENE 22 18586 - 19626 881 346 aa, chain - ## HITS:1 COG:TP0053 KEGG:ns NR:ns ## COG: TP0053 COG0208 # Protein_GI_number: 15639047 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, beta subunit # Organism: Treponema pallidum # 3 346 8 351 351 472 68.0 1e-133 MEINRKALFNERGDVELTKRKMINGNTTNLNDFNNIKYTWVSDMYRTMMNNFWIPEEINM NQDIKDYRNLDFHEKKAYDKILSFLIFLDSIQTANLPNISDYTTANEVNLILTIQAYQEA IHSQSYSYILDTIASPEERTEILYQWRDDEHLLNRNKFIGNIYNDFVENHTKETYMKTVM GNYILEGIYFYSGFMFFYNLGRMGKMPGTVQEIRYINRDENTHLWLFRNIIQELKKEEVE LFTEERINEYKCMLMEGVRQEIEWGQYVIGDNIQGITAQMVKDYIEYLGNLRSRSIGFGN LFDRNIEEPNSMKWVSEYSNPNEIKTDFFEGKVSAYSKSSVFEDDL >gi|289656146|gb|ADCS01000044.1| GENE 23 19636 - 22167 2536 843 aa, chain - ## HITS:1 COG:TP1008 KEGG:ns NR:ns ## COG: TP1008 COG0209 # Protein_GI_number: 15639992 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, alpha subunit # Organism: Treponema pallidum # 3 843 2 845 845 994 55.0 0 MFNIKKRDGRLVEFDRNKIEKAILKAYKSLDREPDENVINEMACSVENLLLNKFPSNHIA TVEEIQDLVEITLIENRQYEVVKSYILYRAQHTMNRKIIEKFSEYITDNNVIDIIRDIQN DFDRTHYDIEQLFLKWNSFLKKDMTQRQYLLAIIKAAAELTSKESPNWEYISARFMVYDN NSSIKQNSEKRGIKNFYDKIKTLTDEGLYGDYILKEYTEEDINELEVYMDSSRDKLFNYS GLDLIVKRYLIRDSEGNVLENIQEMFMGISMHLAIPEGNNKVSFAKKLYDILSTLKITVA TPTMSNARKPYHQLSSCFIDIVPDSLTGIYRTIDNFAQVSKHGGGMGIYFGKVRSQGSDI RGFKGVAGGVVRWIRLTNDTAVAVDQLGVRQGSVAVYLDVWHKDMPEFLQLRTNNGDDRQ KAHDVFPAVSYPDLFWRLAKNNIEATWYLFDPHEIEQIMGYKLEDYYGDEWEKRYYECVN NNKLSRRTISVKDMIRLIIVSLTETGTPFTFNRDAANKANPNKHVGMIYSSNLCTEIMQN MKAIETMDTRIEEINKDSYITKVTKAGDFVVCNLASLVLGNINLEDEKELENIVSITVRA LDNVIDLNYYPVPYAEITNQKYRAIGLGTSGYHHALVQRGIMFSSEEHLEFMDKIYENIN YFAIKASSEIAKEKGAYKYFNGSEWESGEYFRRRDYSSNRWKDLQESVRVNGLRNAYLMA IAPTGSTSIIAGTSAGVDPVMKRYFLEEKKGSIIPRVAPGLNAKTFWNYENAHEVDQDWI IRAASIRQRHIDQGQSVNLYITTDYTMRKILNLLISANEMGIKSIYYVRGKSLEVEECDT CSA >gi|289656146|gb|ADCS01000044.1| GENE 24 22168 - 22347 148 59 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRSIKSLSSFELKLLIYRKLHVNVIFSDINNLNKFLNTYCIFYLNSILYIVYYLIGGVR >gi|289656146|gb|ADCS01000044.1| GENE 25 22334 - 22885 535 183 aa, chain - ## HITS:1 COG:no KEGG:Amet_3673 NR:ns ## KEGG: Amet_3673 # Name: not_defined # Def: hypothetical protein # Organism: A.metalliredigens # Pathway: not_defined # 1 183 1 183 183 133 43.0 3e-30 MDSIRKKGLFEKFFEHRSFLIMQYTNGDITKREFLQYNYDYFLSINAKPFLKLDSYEKGM YNYQYYNGMAKYYRMLANEVRNTKKHAKYYNYYLNMGNKYYHEKDECVLSILKIQNFENI NSYYIKCNSNSLKNNLYEIVLEDKKEAIFHSKAKWLLDVLRENEVFHDDVRISLIENYIN EKY >gi|289656146|gb|ADCS01000044.1| GENE 26 22899 - 22985 93 28 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGNKNFVRIVAIILVLVMVVPFLFQVLN >gi|289656146|gb|ADCS01000044.1| GENE 27 22996 - 23421 551 141 aa, chain - ## HITS:1 COG:no KEGG:FMG_1524 NR:ns ## KEGG: FMG_1524 # Name: not_defined # Def: hypothetical protein # Organism: F.magna # Pathway: not_defined # 1 138 4 141 143 122 41.0 4e-27 MIKYILGTKGSGKTRWLINNANEDFKSGNGNIAFVEVDDDHIFSLDYNVRLINATDYRLN NVESFYGFICGLMAMDYDLQKIYIDGIYKVLKLNIEDLEFIKNKLEKVKDIENREIYINV DYVLSDIPESLKENSLEVTPQ >gi|289656146|gb|ADCS01000044.1| GENE 28 23436 - 24329 651 297 aa, chain - ## HITS:1 COG:TM0515 KEGG:ns NR:ns ## COG: TM0515 COG1242 # Protein_GI_number: 15643281 # Func_class: R General function prediction only # Function: Predicted Fe-S oxidoreductase # Organism: Thermotoga maritima # 1 295 1 296 303 276 48.0 4e-74 MLYNKYSDYLKSKFGEKVYKLPIKLNLTCPNRDGSLGYGGCTFCGEEGGSFENNFGGIKE QLTKDKAVIENRYKAKKFIAYFQNFTNTYLDFEKFKVNIYECMIDDIVGISISTRPDCIS DKYLDFLEEINKNIFITLELGLQTANYRTLKKINRGHGLAEFIDGVNRAKKRNIRVCTHV ILNLPYDDEIDVIETAHILNALQVDEVKLHALYILENTMMGKLYKEGKINLISLEEYKKR VILFLQHLDKRIVIQRIIGRAPEENSLFCNWNTSWWKIRDDIEKEMIDKNFYQGQYK >gi|289656146|gb|ADCS01000044.1| GENE 29 24319 - 24762 437 147 aa, chain - ## HITS:1 COG:RSc1317 KEGG:ns NR:ns ## COG: RSc1317 COG1225 # Protein_GI_number: 17546036 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peroxiredoxin # Organism: Ralstonia solanacearum # 4 147 11 154 154 140 50.0 8e-34 MNTNFELSSTSGKIVSLKDYYGKYLVLYFYPKDNTSGCTLEANEFSIYYEEFKKLDCEIV GISKDTVKSHERFKEKENIPYELLADPDRTVHAQFSVLKNAKMYGKDVIKTIRSTFIFDK EGNLIKEYRDVKAQGHAAEVLEYINAL >gi|289656146|gb|ADCS01000044.1| GENE 30 24768 - 25088 530 106 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|299144108|ref|ZP_07037188.1| ## NR: gi|299144108|ref|ZP_07037188.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 106 6 111 111 114 100.0 3e-24 MTEEKKNGCCCCGHDHEHEHEAEEFETIVLTLDDDSELECVILGIFDYEERSYIALLPAN EEDGEEILIYDFKELENEEVELNVIEDEELFNKVSKEFEALYVEEE >gi|289656146|gb|ADCS01000044.1| GENE 31 25108 - 26559 1736 483 aa, chain - ## HITS:1 COG:FN1277 KEGG:ns NR:ns ## COG: FN1277 COG2195 # Protein_GI_number: 19704612 # Func_class: E Amino acid transport and metabolism # Function: Di- and tripeptidases # Organism: Fusobacterium nucleatum # 2 483 3 486 486 372 42.0 1e-103 MNKLTNLEPKRVFYYFEEITKVPRCSLKEEKIADYLENFAKSHNLKCLRDVNNNIVIKKD GSKGYENAPILIIQGHMDMVCEKADNCTINFDTDPIEFEVEGNIIIARETTLGADNGIAV AMALAILESDEIAHPPLEVLITTNEENGMTGAHNLDGKMLEGKMLLNLDSESEGVACVAC AGGKRDILSFDKKFEKARNSREFYELTVTGLKGGHSGQEIKKGLGNSNKLMGRSLYEINK EFDIDLVDISGGAKPNAIPRLAKSIISIKPDDKKRIQDLIVKLNRNFVRELGKVDPDVRL NFEKTSNYESVLKTEIKENIINLLNILPNGVQSMSQDIDGLVGSSVNVGVIESFEDEIII TTNIRSALQSLRDEISDRHKVCAKVCNAEYSVQSEYPAWEYKDVSHLRDVAAKAYKEITG EELKLEAIHAGLECGLFKETIGDIDMLSIGPNIHGPHAPGENLEIESTNRVYNFVIEILK NLK >gi|289656146|gb|ADCS01000044.1| GENE 32 26660 - 28000 1201 446 aa, chain - ## HITS:1 COG:no KEGG:CTC00421 NR:ns ## KEGG: CTC00421 # Name: not_defined # Def: hypothetical protein # Organism: C.tetani # Pathway: not_defined # 1 409 17 426 535 259 37.0 2e-67 MKIELFNFVDNSIKLLNNYDEVLNEIAQNAIKLLKDILCDDDNFLNITYRIKSENSLREK IIKNNFFLKYEKPETMMLDLSDLIGIRLECRFIKEEEQLFNIIRQKFNTYVGDGYYKIID DSPIMLKLSEKQPQIQKNGFEIYKIDGIYKYGKNFFRFELQIKSMVNVFWGEIDHKILYK NYNYMINEGFFKDIMASIKDSLYMVDKQLMILYDHVSSLDASDEESAKEQLNYLLSKIIH DVFSNKIKDDFGFVFNFKNSIDFIVEYLQMKAVKEKEISFGENFINLINKINKIDYSKMN IGEYIEFNKSIKCNDSFMNQISDTIIEIMNKDFSWHLFMKILYQIENSGYEENLQDFLYF LRYKYSLVFLDMADKFKLSKDEVNYVEDVVLKFISSRFKNNYSINYLIEFCLNEIKKGYY EIAFEEDISANYISSKLIARLENYEE >gi|289656146|gb|ADCS01000044.1| GENE 33 28093 - 28854 830 253 aa, chain - ## HITS:1 COG:CAC0279 KEGG:ns NR:ns ## COG: CAC0279 COG0760 # Protein_GI_number: 15893571 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Parvulin-like peptidyl-prolyl isomerase # Organism: Clostridium acetobutylicum # 1 246 1 246 247 146 35.0 4e-35 MEKKVLAIVDGNEITMDDFNFFMESLNPQVRAYFTDGDKKKEIIDELIYQELLYLDAIEN KLDEDEEFVTVSERTKASLLKTYALGKLLENVSPSEKEIEEFYNANAEHYDVPNSVDASH ILVEDENKANELYNKILAGENFEELAKNNSMCPSKNNGGNLGVFHSGQMVREFDEKVFSM KEGEISEPVKTNFGFHIIKLNKIIPSKKHTLSEVRDDVIKEVKRYKEQKIYMNKIRELSQ KHNIKVLDIEPEK >gi|289656146|gb|ADCS01000044.1| GENE 34 28916 - 29113 389 65 aa, chain - ## HITS:1 COG:CAC0807 KEGG:ns NR:ns ## COG: CAC0807 COG1278 # Protein_GI_number: 15894094 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Clostridium acetobutylicum # 1 64 1 64 65 87 71.0 8e-18 MKGKVKWFNGEKGFGFITAEDGKDVFAHFSQIQKEGFKTLEEGQDVEFDVVEKEKGPQAE NIVIL >gi|289656146|gb|ADCS01000044.1| GENE 35 29508 - 31334 2274 608 aa, chain + ## HITS:1 COG:CAC0158 KEGG:ns NR:ns ## COG: CAC0158 COG0449 # Protein_GI_number: 15893453 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains # Organism: Clostridium acetobutylicum # 1 608 1 608 608 652 53.0 0 MCGIVGYCGKLNATDVILNGLEKLEYRGYDSAGISVITQDNMITIKRAGRLKNLSSAIAE RPFTGNVGIGHTRWATHGIPNEVNAHPHLNNDESISVIHNGIIENFVELKEELLNKGYTF KSDTDTEIVAQLLDYYYDGNLLNAVVRTIKRLEGSYALVIISKNNPNELIAVRNESPLVL GIAKDGYIVTSDIPSILEYTRDVVYLDNGEIIYANLNKGYKIYNTNLDEINKKISTIEWN LEAASKEGFEHFMIKEIFEQPKAIEEAIRRKLKNDTINISDSSFSKEELEKFNKIYIVAC GTAYHAGQIGKFAIEKFAKLPVITDIASEFKFNSNFVDEKTLIIFVSQSGETADTLSALR EGKKHGAKTLAITNVVGSSIAREADKVLYCYAGPEISVASTKAYTTQLIALYFLALDFAK KLETMNENKILEIISELKSIPNKINIILQNTTIFENIAENIKNSKSIFYTGRGIDYITSK EGALKLKEISYIHTEAFPAGELKHGSIALIEEGTNVFTVATQSNLIEKTASNIQELAARG AKVYSIALEGNTLLEKNSNAVIYIPPTIDILTPLLTVIPEQLIAYYTSVSKGNDVDKPRN LAKSVTVE Prediction of potential genes in microbial genomes Time: Fri May 27 07:42:41 2011 Seq name: gi|289656145|gb|ADCS01000045.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.45, whole genome shotgun sequence Length of sequence - 34303 bp Number of predicted genes - 34, with homology - 33 Number of transcription units - 9, operones - 8 average op.length - 4.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 190 - 229 -1.0 1 1 Op 1 40/0.000 - CDS 247 - 2346 1787 ## COG0642 Signal transduction histidine kinase 2 1 Op 2 . - CDS 2346 - 3050 768 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 3120 - 3179 8.2 + Prom 3019 - 3078 7.1 3 2 Op 1 . + CDS 3207 - 4961 1520 ## COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP + Prom 5015 - 5074 7.7 4 2 Op 2 . + CDS 5100 - 6572 1747 ## COG4690 Dipeptidase + Term 6574 - 6622 13.6 - Term 6562 - 6610 14.4 5 3 Op 1 . - CDS 6616 - 6924 502 ## COG4496 Uncharacterized protein conserved in bacteria 6 3 Op 2 . - CDS 6936 - 7412 547 ## COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase - Prom 7529 - 7588 10.7 - Term 7558 - 7591 2.4 7 4 Op 1 . - CDS 7604 - 8149 825 ## COG1592 Rubrerythrin 8 4 Op 2 32/0.000 - CDS 8234 - 9304 1486 ## COG0216 Protein chain release factor A 9 4 Op 3 1/0.000 - CDS 9279 - 10139 337 ## PROTEIN SUPPORTED gi|225874212|ref|YP_002755671.1| ribosomal protein L11 methyltransferase 10 4 Op 4 . - CDS 10133 - 11083 1018 ## COG3872 Predicted metal-dependent enzyme - Term 11091 - 11123 2.5 11 4 Op 5 . - CDS 11124 - 11327 280 ## PROTEIN SUPPORTED gi|167464107|ref|ZP_02329196.1| 50S ribosomal protein L31 - Term 11350 - 11395 -0.1 12 4 Op 6 . - CDS 11399 - 11824 588 ## Clos_1254 ubiquitin-associated domain-containing protein 13 4 Op 7 17/0.000 - CDS 11884 - 12531 971 ## COG0569 K+ transport systems, NAD-binding component 14 4 Op 8 . - CDS 12541 - 13836 1134 ## COG0168 Trk-type K+ transport systems, membrane components - Prom 13861 - 13920 2.5 - Term 13901 - 13934 2.4 15 5 Op 1 . - CDS 13935 - 14285 479 ## PROTEIN SUPPORTED gi|227485252|ref|ZP_03915568.1| ribosomal protein L20 16 5 Op 2 . - CDS 14301 - 14492 219 ## PROTEIN SUPPORTED gi|227901329|ref|ZP_04019134.1| ribosomal protein L35 17 5 Op 3 . - CDS 14504 - 14980 402 ## PROTEIN SUPPORTED gi|167856598|ref|ZP_02479300.1| 50S ribosomal protein L35 - Prom 15177 - 15236 17.6 - Term 15290 - 15337 10.4 18 6 Op 1 . - CDS 15393 - 16556 1351 ## COG0787 Alanine racemase 19 6 Op 2 10/0.000 - CDS 16570 - 17802 807 ## PROTEIN SUPPORTED gi|163762490|ref|ZP_02169555.1| ribosomal protein L28 20 6 Op 3 . - CDS 17812 - 21360 3398 ## COG1196 Chromosome segregation ATPases 21 6 Op 4 3/0.000 - CDS 21363 - 22433 1008 ## COG1243 Histone acetyltransferase 22 6 Op 5 . - CDS 22426 - 23127 788 ## COG0571 dsRNA-specific ribonuclease 23 6 Op 6 . - CDS 23136 - 23360 402 ## gi|299144134|ref|ZP_07037214.1| acyl carrier protein 24 6 Op 7 . - CDS 23369 - 24349 1166 ## COG0416 Fatty acid/phospholipid biosynthesis enzyme - Prom 24395 - 24454 15.0 + Prom 24365 - 24424 12.9 25 7 Tu 1 . + CDS 24494 - 24586 59 ## - TRNA 24495 - 24571 76.1 # His GTG 0 0 - Term 24566 - 24603 1.2 26 8 Op 1 . - CDS 24636 - 25952 319 ## PROTEIN SUPPORTED gi|162456259|ref|YP_001618626.1| putative ribosomal protein 27 8 Op 2 . - CDS 25989 - 27314 1219 ## COG0860 N-acetylmuramoyl-L-alanine amidase 28 8 Op 3 . - CDS 27371 - 28354 953 ## COG0309 Hydrogenase maturation factor - Prom 28400 - 28459 8.7 - Term 28477 - 28506 0.5 29 9 Op 1 . - CDS 28595 - 29920 1241 ## gi|299144139|ref|ZP_07037219.1| conserved hypothetical protein 30 9 Op 2 . - CDS 29917 - 30618 476 ## COG1989 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases 31 9 Op 3 . - CDS 30618 - 30977 567 ## Clos_1635 hypothetical protein 32 9 Op 4 24/0.000 - CDS 30989 - 32170 1069 ## COG1459 Type II secretory pathway, component PulF 33 9 Op 5 . - CDS 32167 - 33618 1529 ## COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB 34 9 Op 6 . - CDS 33630 - 34295 640 ## COG0551 Zn-finger domain associated with topoisomerase type I Predicted protein(s) >gi|289656145|gb|ADCS01000045.1| GENE 1 247 - 2346 1787 699 aa, chain - ## HITS:1 COG:BH1154_2 KEGG:ns NR:ns ## COG: BH1154_2 COG0642 # Protein_GI_number: 15613717 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Bacillus halodurans # 452 699 24 270 274 228 46.0 4e-59 MEKNKFSIRYSNIGIVCFLILLSLIVSITPFFLNKEKLGKEENIYAYSDKIRFEIYDSLY TSYDRGDLRQDNNVLEYYIRSYKISNYPFTKEYKEKYPNNIVERKSNGSFVDWDGSISEI RRDIDSLSELNIDKTEEPEFTVNYLTSEPNINEFDPQNIKTDENDKIFVSGFYENGKVKF TDSSNFKDKDSNIYLSKLKYEIKKRYSDIEPKSGIKKINFNYMIDLSSNNFEMLKTRMNY ETYFFPILLISMFSAFLIVLFLTSISNYKFTSNVGFYKGISSYPIEIVIALIGLWFVPLS FISSEKEYFFKLYNGMLFNIIFFILTFFGSIAIYYIIYSIKDIYNLGTETFVLKNSIIVR FYKFIKKSFIKYFDVSNSRIELILYIGFLILGFFGAIILVRDSLFILALFIWFIFVSGIF MMIRSSFIDLQNISNISKKIADGNYNIKIDEGATRFKSISHSLNSISNNLNTAVENAIQS ERLKTELITNVSHDLKTPLTSIINYSQLIVEDNTTNEDRIEYAKIINEKSNKLKKLIEDL FEVSKLSSKNIELNMENVDFKQLIEQVIGEWEDKFNDNNLDININFPDDPVILKLDGNKT SRILDNLFSNINKYALENTRIYVDLTKSEKVKLVIKNISKYPLNITANELIERFTRGDSS RSTEGSGLGLSIASSLTSAQNGNFNIEIDGDLYKTIIEF >gi|289656145|gb|ADCS01000045.1| GENE 2 2346 - 3050 768 234 aa, chain - ## HITS:1 COG:BH1153 KEGG:ns NR:ns ## COG: BH1153 COG0745 # Protein_GI_number: 15613716 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Bacillus halodurans # 4 226 5 229 232 238 56.0 8e-63 MDKYKILVAEDDKAIRDSIGIYLKNSNYDVIYAFDGKDALEKFRSNEIHLVIMDLMMPNV TGEEAILKIREKSYVPIIILSAKSEDYDKVIGLNIGADDYITKPFNPLELMARVNSNIRR LYKYQSKEENERYIEIGGIKLNTFEKTVFVDGEKVGLTSIEYKILELLMENPNRVFSIDE IYEKVWNEPAIEAKTVTVHIRRIREKIEIDPKKPLYLKVAWGLGYKFVKPNRRL >gi|289656145|gb|ADCS01000045.1| GENE 3 3207 - 4961 1520 584 aa, chain + ## HITS:1 COG:BH2516 KEGG:ns NR:ns ## COG: BH2516 COG1293 # Protein_GI_number: 15615079 # Func_class: K Transcription # Function: Predicted RNA-binding protein homologous to eukaryotic snRNP # Organism: Bacillus halodurans # 1 582 1 568 570 335 33.0 1e-91 MSYDGSTLRAIVYELNEKISNTRIEKIYQPSNEELIFNLRNSNGKYKLLINAGSNAPRVY LTDEIKENPTNPPAFCMLLRKHLEGFKILNFSQYKMDRILRINILSKNELGDELEKSLFV EIMGKHSNIILTRSNDLKIYDSIKRVNSLMSSIREILPSTTYSIEPISNKIDPISKNSLY DSIEFFDENKSIKNNLIKTYTGLSPTIVREIAYRANIDENRMFFDLSPNEKEKLIQSYDE IIRDLKNHNYYPIIIKSDNNLIDFSCIDLKMYPEKEKQNYNSISEAVKLFYSEKSITQLI NDKSYTLKKLVKNYTDREIKKLEKQSQELNEAIDREKYKIYADLISANSYKIEKGANFVI LENFYENMNLIKIPLDEKLSATSNANKYYKKYSKLKNAAIILEKEIEKTNTNIEYLKSIL LNIRLSENSSDIDEIREELIEMGFIKKINTKKKKISSKMNFLEYKSSEGYTIICGKNNKQ NEYISLKLAGKDDLWFHVKNAPGSHVILKNNGNDFSQKSIEEAAQIAALNSSLLNSDNIE VDYTKRINIKRHPSKILGLISYTNYNTINIKKKDLNINDIEKIK >gi|289656145|gb|ADCS01000045.1| GENE 4 5100 - 6572 1747 490 aa, chain + ## HITS:1 COG:SPy0713 KEGG:ns NR:ns ## COG: SPy0713 COG4690 # Protein_GI_number: 15674771 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidase # Organism: Streptococcus pyogenes M1 GAS # 2 489 10 472 472 485 49.0 1e-136 MCTTILVGKNASYDGSTIVARIEDSSSGMFKAKKFIVVEPKEQPVHYKSVRTDCEIELPE NPMRYTCLPNVKKWRGVWGACGINEKNVSVSATETITTNERVLGADPLIEFEPDIIKKGG IGEEDIIVITLPYIENARQGVERLGSLIEKYGTYESNGVAFQDVDEIWWFETIGGHHWIA RKVPDDRYVVMPNQFGIDYFDLDDAFGEKKEFMCSSDLREFIKKYHLDLSMDGRLNPRDA FGSHTDEDTTYNTPRAWVMLRYFNPTSYTWDGPAADFKPENLNLPWSMVPEKKITIEDVK CILSNHYQGTPYDPYARYGDLSQRGKYRPIGINRDDVLALTQIRPYMPDEIRSIEWLAFG CNVFNAIAPFYSNITKTPEYLANTTLTPTIDNLYWANRIIATLCDPHFSITLPDVENYQM IVQSKAHEILNKYDEEFLNNRSKIKNINEFLEKANDDISNFLKVKTTDLLDKTLYTASCE MKNGYSRSDA >gi|289656145|gb|ADCS01000045.1| GENE 5 6616 - 6924 502 102 aa, chain - ## HITS:1 COG:BH0639 KEGG:ns NR:ns ## COG: BH0639 COG4496 # Protein_GI_number: 15613202 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 6 101 5 100 100 114 56.0 4e-26 MIYNSKVKNEQTDGLFEAILALENIEECYRFFEDICTVKEIQAISQRLQVVKLLIKNKTY HEIESETGASTATISRINRSLNYGSDGYKLVLERLNFIEKEK >gi|289656145|gb|ADCS01000045.1| GENE 6 6936 - 7412 547 158 aa, chain - ## HITS:1 COG:PH0320 KEGG:ns NR:ns ## COG: PH0320 COG0041 # Protein_GI_number: 14590237 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase # Organism: Pyrococcus horikoshii # 3 155 12 168 177 158 55.0 4e-39 MKVSIVMGSISDKKISDDIVSVFKKFGVEYEIEIISAHRTPLRAYEFAREAKSRGVGVII SIAGKAAHLGGVLAANTILPVIGVPVKSSTLDGLDALLATVQMPSGVPVATVAIDGGKNA ALLAIQMLAINNESLSSKLLNYKKELEEDVQRMNEELN >gi|289656145|gb|ADCS01000045.1| GENE 7 7604 - 8149 825 181 aa, chain - ## HITS:1 COG:CAC3018 KEGG:ns NR:ns ## COG: CAC3018 COG1592 # Protein_GI_number: 15896270 # Func_class: C Energy production and conversion # Function: Rubrerythrin # Organism: Clostridium acetobutylicum # 2 178 5 181 184 185 50.0 5e-47 MNAMTSDNLRSAFGGESQAHMRYIIWGEEAEKNGFKNVSRLFKATSDAERVHATLHFKAL KDVKGDFPVVSMAGFGIGTTSENLEGARGGEVFEYTQMYPAYIAVAEMQEEKTAVKAMKY AIEAEKIHAERYAEAKAAVDSGKDLDVEKIFMCPFCGYITFDEMVEECPICHVKSKSFIE Y >gi|289656145|gb|ADCS01000045.1| GENE 8 8234 - 9304 1486 356 aa, chain - ## HITS:1 COG:CAC2884 KEGG:ns NR:ns ## COG: CAC2884 COG0216 # Protein_GI_number: 15896138 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor A # Organism: Clostridium acetobutylicum # 1 354 1 354 359 428 59.0 1e-120 MYENLQVFDEKYIELEQKLMDINVINDSKLYQKIAIEHAEIEPVVLKYREYKTLISNLED NKEMLNENLDDDMRDLIKEDIKDSEEKISVLEDEIKILLIPKDPNDSKNVIVEIRAGAGG DEAALFAGVLFRQYVRFAERMGWKVEIMSTNEIGIGGYKEVIFMILGRGAYSRLKYESGV HRVQRVPETESSGRIHTSTATVAVLPEAEDVEIDIEPSDIKFDVFRASGNGGQCVNTTDS AVRLTHIPTGIVISCQDEKSQLRNKEKAMKILKTKLYDLKLQEQNAELSMQKKSQIGTGD RSERIRTYNYPQGRVTDHRIGLTLHKIDSIVDGDLDEIIDALIASDQASKIENVDK >gi|289656145|gb|ADCS01000045.1| GENE 9 9279 - 10139 337 286 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|225874212|ref|YP_002755671.1| ribosomal protein L11 methyltransferase [Acidobacterium capsulatum ATCC 51196] # 25 275 39 290 294 134 30 8e-31 MVIRDILNRGIKYLENSEYTNPFFEVRLILSKILGYDISYLISHEDENIDKEIENKYFDI LRRRNNGEPLQYIFGIVEFYGRDFFIDDNVLIPRNDTEVSIEVLKKLFENYKIENFLEIG CGSGIVSISMAIENKDIKFTSCDISDYAINNTKKNISKYNLDNISVVKSNIYSNIKDKYD IIYSNPPYIKTEEIDYLQREVKDYEPHLALDGGIDGLCFYRKIVSKLDKFLKKDGFVVFE IGHNQSSELRNILSEYNFFVIKDMSGRDRVVIASKGEIDVRKFASI >gi|289656145|gb|ADCS01000045.1| GENE 10 10133 - 11083 1018 316 aa, chain - ## HITS:1 COG:CAC2886 KEGG:ns NR:ns ## COG: CAC2886 COG3872 # Protein_GI_number: 15896140 # Func_class: R General function prediction only # Function: Predicted metal-dependent enzyme # Organism: Clostridium acetobutylicum # 11 304 4 297 317 251 44.0 1e-66 MDKVFNKKAFKTTIGGQALIEGVLMRGPSKIAIAVRKPDKTIELKIEKLNDLSEKYKILS FPIIRGAYKLVDAMVIGINALTYSASFLEDESKEEIRKSDKLMDKIFKDKKENIETGLTI LVSFMIASILFMIFPSLIAGFLQKHIGSTVILNLVEGVFRLIVFGIYLYYISKIEDIKRV FEYHGSEHKSIHCYEAGEELTVENVKKYPLVHPRCGTSFLFMVMLISIFVLSFFGWPSIL IRIISRILALPIIAGIAYEVNRIIGKSDSNVCRILAIPGLQIQKYVTVREPDDSMIEVAI ESLKAVLPEDGESDLW >gi|289656145|gb|ADCS01000045.1| GENE 11 11124 - 11327 280 67 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|167464107|ref|ZP_02329196.1| 50S ribosomal protein L31 [Paenibacillus larvae subsp. larvae BRL-230010] # 1 63 1 63 65 112 76 3e-24 MQKGIHPEYKEATVTCACGNTFKTGSVKEDLKVEICSECHPFFTGKQKFTDHGGRIEKFN KKYQRNK >gi|289656145|gb|ADCS01000045.1| GENE 12 11399 - 11824 588 141 aa, chain - ## HITS:1 COG:no KEGG:Clos_1254 NR:ns ## KEGG: Clos_1254 # Name: not_defined # Def: ubiquitin-associated domain-containing protein # Organism: A.oremlandii # Pathway: not_defined # 2 131 3 131 180 67 34.0 1e-10 MITMEKIDYVMDVTNSSYDVVRRALLDSDGDVDLAVDIIRKSVDTSSKKSKDTIDFEDIK DAIKEIWNQGNANKLVVKKDGDIVLSLSLTVSALGIILAPVAALVGVGAGIVNDYEFKII LSTKEEIDIKEYIKCKSKTKN >gi|289656145|gb|ADCS01000045.1| GENE 13 11884 - 12531 971 215 aa, chain - ## HITS:1 COG:SA0939 KEGG:ns NR:ns ## COG: SA0939 COG0569 # Protein_GI_number: 15926674 # Func_class: P Inorganic ion transport and metabolism # Function: K+ transport systems, NAD-binding component # Organism: Staphylococcus aureus N315 # 2 214 3 215 220 167 40.0 2e-41 MKSFVVFGCGRFGSTIATTLTGLGNEVLAIDNNFENAQAISDQVTTAIQCDVLDENATKD LGLKNFDTAIIAIGSNLEAAIMATIISKEAGIPYIIAKAKTERQGGILEKIGADKIIYPE RDMAYRVAHNMTSSKILDYIQLSPGFSIVELKLLPEWENKTIEELKIRNKYEITILGIQR NNDIQIAPKPDTKLVSEDVLIILGREEAIEKVEKI >gi|289656145|gb|ADCS01000045.1| GENE 14 12541 - 13836 1134 431 aa, chain - ## HITS:1 COG:BS_yubG KEGG:ns NR:ns ## COG: BS_yubG COG0168 # Protein_GI_number: 16080162 # Func_class: P Inorganic ion transport and metabolism # Function: Trk-type K+ transport systems, membrane components # Organism: Bacillus subtilis # 1 431 20 445 445 286 41.0 5e-77 MGISFIVVILIGTFLLNLPIASSNGESIGFVDAFFTSSSATCVTGLVVVNTAKNWTTFGH IVIIMLIQIGGLGTMVVFSIIPLILRKKIGLTQRLLLKEQLNIDSMSGIVKLSKYVIFTS FIVEFIGAIFLSVRFIPIYGFVKGIWYSIFHSISAFCNAGFDIIGNSIEIYNTDIIINLV IMLLVFLGGLGFTVYIDMYRSRKFRNFSMHTKMVLIMSFILLAFGTILFLLIEYNNVQTI SNYSIKDKFLISAFQSTITRTAGFNSIPMDKIRDSSAFLMIILMFIGGSPASTAGGLKTT TLGVMMFTAFSVIRGEREAVFMKRAIPNNIIFKCMAITFICIGLVLMVALELSIFENEKF KFVDILFETVSAFGTVGLTRGITDKLGNVSKIILSFTMFLGRVGPTTLAIGLMRKKKSSN LKYAEGHVIVG >gi|289656145|gb|ADCS01000045.1| GENE 15 13935 - 14285 479 116 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227485252|ref|ZP_03915568.1| ribosomal protein L20 [Anaerococcus lactolyticus ATCC 51172] # 1 116 1 116 117 189 80 3e-47 MARIKRAVNAKKKHKKILKQAKGYFGAKSKLFRPANQAVMKSLSYAFIGRKQRKRDFRKL WIARINAATRINGMSYSKFINGLKKANIEINRKMLSEMAINDPQGFAKLVEIAKGE >gi|289656145|gb|ADCS01000045.1| GENE 16 14301 - 14492 219 63 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227901329|ref|ZP_04019134.1| ribosomal protein L35 [Finegoldia magna ATCC 53516] # 1 63 1 63 63 89 68 4e-17 MGKMKTHRASAKRFKRTGSGKLKRGYAFKGHLTGKKTAKRLRKLRKSSLVSKGDQRRIDH MIP >gi|289656145|gb|ADCS01000045.1| GENE 17 14504 - 14980 402 158 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|167856598|ref|ZP_02479300.1| 50S ribosomal protein L35 [Haemophilus parasuis 29755] # 1 155 2 157 159 159 49 2e-38 KEVRLVDDEGNQVGVVTRVRALEMAEEKKLDLVNVSPNSKPPVCRIMDYGKYRYDMIKKE REAKKKQKVINVKELRLTPSIETNDLKTKANRAKEFLQNGDRVKISVRFRGREMGHTEMG KDVLDDFVELISEYGVVDKKPKIEGKSMIMFLSPKTDK >gi|289656145|gb|ADCS01000045.1| GENE 18 15393 - 16556 1351 387 aa, chain - ## HITS:1 COG:CAC0492 KEGG:ns NR:ns ## COG: CAC0492 COG0787 # Protein_GI_number: 15893783 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Alanine racemase # Organism: Clostridium acetobutylicum # 5 381 6 382 386 285 43.0 2e-76 MNLTRPAWLEINLDYLIENINKIRNNVREDAEIISVVKSNAYGFGALKIVEILRENGINF FAVATMSEAIAIRKKFKDVKLLILGYTPDYLMNVAVENNITLAIYNYESARTLNEIAKSQ NKTATIHIALDTGMNRIGFKNIDDSIEDIKKISKFKNIYIEGVFSHFAAADTNAEYTKRQ FNIFKNVTDILEKNKINIPIKHINNSSAILNYNEYSLDAVRPGIIQYGSTEGIKTKYKEL NNVKYIGQIKAQVSNVKIVSKGEKVSYGLTYETSTETKIATIPLGYSDGILRQLSGKIDV LVSGKRCRQIGRICMDQMMVDVSGVDCNIGDEVVILGSQGNEYIDILEIARKVDEIATSY SCHFSPRLPKVYIKDGKIDEIVDELIK >gi|289656145|gb|ADCS01000045.1| GENE 19 16570 - 17802 807 410 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762490|ref|ZP_02169555.1| ribosomal protein L28 [Bacillus selenitireducens MLS10] # 110 409 17 320 336 315 50 2e-85 MFKWFKEKFSKDDEQKIIKENYADEVNEVEQKVEFYEENNLENTSVEDIDTKEIVESNNE LDQLVEGTLHQDEIKDNNLENETIDEISNIEEKEEIYEEVEEIKEESKLSIFQKLKQGLT KTRHEMGVKINTILGSYVKIDDEMLEDLEDILISADIGMETTMKLIDNLRNTIIQEKIND PNMVKPLLKEEVKKLMNDSLDSKIKKESPTIILVVGVNGVGKTTTIGKLSSKLKMEGNKV LIAAADTFRAAAIDQLKTWGDRANVDVISHNEGADPAAVIFDGITAAKSRNSDILICDTA GRLHNKANLMKELEKINRVIDREYPNANRETLLVLDATTGQNAMNQAKTFKEVCSISGIV LTKLDGTAKGGVVIALQSELQIPIKLVGVGEGIDDLQEFELNSFIDAIFD >gi|289656145|gb|ADCS01000045.1| GENE 20 17812 - 21360 3398 1182 aa, chain - ## HITS:1 COG:BH2487 KEGG:ns NR:ns ## COG: BH2487 COG1196 # Protein_GI_number: 15615050 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Chromosome segregation ATPases # Organism: Bacillus halodurans # 1 1181 1 1180 1188 543 32.0 1e-154 MYLKTLYIQGFKSFAQKTKIEFNNKITGIVGPNGSGKSNISDAMMWVLGETSIKSLRGSK MEDVIFSGTDEKKPLGFAEVTIVFDNSDKKLPIEYTEVSVTRRMYRSLESEFLINNVKCR LKDIKELFMDTGIGKDGYSLIGQGKIESILSNKPEQRRSVFEEAAGISKFKMRKLESENK LRKTEENLIRLNDIISEIEIREKVLKVESENAIRYKNFFNKLTDLEVTLAFVDIEKQKLS EDKFNEKIAFINGEIENINLSIKINQDEQQNVEEKIRIIEEKIESIQLSEIENNKNYERM LSQIELISEKKLNINSNVEQRNTNIFELENLILQNREKYNTNIEKINTCNDDFVKVTEQL SKLKKDLDLNILELKKVEDKIETDSKILLELHKNKSEIESKQLMTQSIISEKESRLLSVS KNLDLLKENNIEIEKEFSFIGIKYNDILNRKSQLIVDKEKLEKEILELNNKIENSSKLLS EYKNKYDKKNAEFIALKNIADNYEGYSKSVKFFMNGAKKRNIFSNSLIGPVAENLRVDSK YEKAISVALGGNLQNIIVKSDSDAKEMIEFLNREKYGRVTFLPINSMTYKEIDFKLKDLN EEGLIGFADELIEFDCKYKSIFKNLLGKIIISKDFDTANRISKKLNRTYRVVTLDGDSLN IGGSITGGSILKNNTDIISRKSDIEKLERESLDLRDKYESILKEYDELKSKIEDDSNLLN ELKNEIYMISSEIVTLENSKNNLSLSKNSNDAYLSKYVEEKNQLMSSITLDKDLLTELDN NLKNIDFQLKEKNISGNTFDKEHDTLKLLIEEQREEYSKNQLDSIKIQGNIDSLIKENNN ILSNNEFNNLKITNLNSEIVSLELDRENLNIEENKLNEKLINSKDILDKTKEALFELRES KLSLNLDLKKYRSIFEQLQIKLIDFEKRNAKILSEKDKIEFNILNIEEKIKIEYGIEADN IKKLVDYKNLKEIKDEIFDLKVSISKLGDINLFSIEEYKAVSERLRFNLEQKQDLLDSRE EIKSILKELDKEMKEKFRETFSKVSKYFEEIFKILFNGGKAQIEIDGDDELYSGIEIKAQ PPGKRFQSLSLLSGGERALTAVALLFALLKVKTAPFCILDEIDAALDDANVKRYVDYLIK IENIQFIIITHRKLTMEIANILYGVTMEEKGISKIISVELKN >gi|289656145|gb|ADCS01000045.1| GENE 21 21363 - 22433 1008 356 aa, chain - ## HITS:1 COG:CAC1749 KEGG:ns NR:ns ## COG: CAC1749 COG1243 # Protein_GI_number: 15895026 # Func_class: K Transcription; B Chromatin structure and dynamics # Function: Histone acetyltransferase # Organism: Clostridium acetobutylicum # 6 313 7 317 358 286 52.0 5e-77 MSKKNIIPIFVPHLGCPNDCVFCNQNKITASSTNITSDDVRSIIEEYLSYFKDKNNIEVA FYGGSFTAIEICIQLELLSVAKEYKENNIIKEIRLSTRPDCIDIKRLEILKHYLVDTIEL GVQSLDEDVLNLSNRGHDDKCVYNAVKLIKKYGFNLGLQQMIGLPGDSLEASLYTTREFI KLNPDFVRIYPTLVIKDTELEKSLYNGSYKPLSIEDAVRITKELLKLYILNGIYVIRIGL QPTENIQMGKDVIAGPFHPAIRQIVEGEILFDVLKNFFNDKEITNYELEIHSSNKNVSNL AGQKSFLKNKIINEFKIKNLKLFGENISDDVLILKYRLNEKNFENEIQIKDYMIWR >gi|289656145|gb|ADCS01000045.1| GENE 22 22426 - 23127 788 233 aa, chain - ## HITS:1 COG:BH2489 KEGG:ns NR:ns ## COG: BH2489 COG0571 # Protein_GI_number: 15615052 # Func_class: K Transcription # Function: dsRNA-specific ribonuclease # Organism: Bacillus halodurans # 8 230 38 259 263 181 41.0 9e-46 MPKNVSILLSLLEYEFKNDKYINIALTHSSYINEHNLKDTVSNERLEFLGDAVLDLIIGE YFYYSHKNLKEGSLSKLRSKVVNENSLYKIATNISIGDFMYFGKGEIKNKGNLRESTLSD CLEALIGAIYIDGGLDAVRKVILRLFHDRIMEVENLKSLEDYKTMLQECIQRNKMGNIKY VIYDEKGPSNDKVFYSNVLINDIIIGNGYGKTKKSSEQLAAKNALIRIGELDV >gi|289656145|gb|ADCS01000045.1| GENE 23 23136 - 23360 402 74 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|299144134|ref|ZP_07037214.1| ## NR: gi|299144134|ref|ZP_07037214.1| acyl carrier protein [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 74 1 74 74 87 100.0 4e-16 MKNKVLELIASQFNKEVEDLREDTSFADDLNADSIDIVELVMSIEDEFGIEIEDDILENM STIGDVLDYLEEME >gi|289656145|gb|ADCS01000045.1| GENE 24 23369 - 24349 1166 326 aa, chain - ## HITS:1 COG:CAC1746 KEGG:ns NR:ns ## COG: CAC1746 COG0416 # Protein_GI_number: 15895023 # Func_class: I Lipid transport and metabolism # Function: Fatty acid/phospholipid biosynthesis enzyme # Organism: Clostridium acetobutylicum # 1 326 1 329 331 233 41.0 5e-61 MKILFDTLGGDNGSYEVIKGAFEAKKEFDIDIAFVGKENEIMNITDQLDQNIEFEIINAS EKIENDEEPAFALRKKKDSSIVVGLKALKEKKVDAFVSAGSTGALLAGGLFIVGRVENIK RAVLPTAIPNLKGSTLLIDSGANMDCDESLLLQFAKMGKIYLEASGNHNPKVGLLNVGTE KGKGNSVVKNTYELLEKSDLNFIGNIEARDVTLGVCDLVVCDGFVGNVLLKNTEGVAYFL TKLIEKSVAELNLSKDSLIDIKMLISKLSKRIDYHEVGGAILLGLNEVVIKAHGSSDYVA IKNAAKVAVMAVKADVVKNLGKIFKE >gi|289656145|gb|ADCS01000045.1| GENE 25 24494 - 24586 59 30 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MGWIVGFEPTISRATILRPNQLGHTHHNHQ >gi|289656145|gb|ADCS01000045.1| GENE 26 24636 - 25952 319 438 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|162456259|ref|YP_001618626.1| putative ribosomal protein [Sorangium cellulosum 'So ce 56'] # 240 425 7 197 207 127 38 9e-29 MRDNRKFDEMRNIELELNYTSAPDGSVLIKCGNTKVICTAMIEDKVPFFLKGKNSGWLSC EYSMLPGSTSVRKVRDISRGKLDGRSQEIQRLIGRSLRSCVDLSKIGEKTIWIDCDVISA DGGTRTTSINGSFIALSLAVKNAIRQGIILENPIKNKVAAISVGIVENEKLLDLNYDEDS NAQVDLNVVMNDNKEIIEIQGTAEGRSFSRKELNELIDLSEIAIDNIFNIQNKVLLDKEK IVLSSDNEHKITEIKEILKDLPVEIISKKDVNLSNINVDENLDTLEGNAHLKASAIKDKC AYSVIADDTGLFVNALNGEPGVHSARYAKSHDDVENRKLLIKNLRDEKDRRAYFKTVIVY IDSIGEEHIFEGICKGEITEKEIGNGGFGYDSIFLPKGFNRTFGEMSSDEKNLISHRSEA IKKFKDFLMKKYSDKIIY >gi|289656145|gb|ADCS01000045.1| GENE 27 25989 - 27314 1219 441 aa, chain - ## HITS:1 COG:CT268 KEGG:ns NR:ns ## COG: CT268 COG0860 # Protein_GI_number: 15604989 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: N-acetylmuramoyl-L-alanine amidase # Organism: Chlamydia trachomatis # 255 441 61 246 259 101 34.0 2e-21 MRNKYIYLIILTFLFLLSDKVYADSQFDVTIDGKDVSVKMVNVEVNKTKLDMAFNAYTDK GRTFVPIRELTESLGADVEWDNSTKSASISLGQKEIKLKIGSNIIYINGVKTKLEENSIP KFAEYKEPRIETKTMVPLRFLSEAFGYDVDWNGETKTASVLSSKKETSKAQKEETKSKDK EKIKTASLNNTDKGVKSLNGNNALFTSNYEKMETNQLNKTAEEEAYKAAGLSIPDLEEEE RVITKRFKIDGPLTIVIDPGHGGKDSGAIMESGLTEKELNLKVAGRLYELLKKEEGYEVI ITRTEDEFIKLVDRAAISNDNGAEIFLSIHFNSSDNKEAKGIEVLYASESKVKIKTVEQK HFANELLKALIEETGCSSRGLKNRPDLVVLNKTKNVSALAELGFMSNEEDYKNIVDDNYL DKLANGLFKGIKNYVNKYGDK >gi|289656145|gb|ADCS01000045.1| GENE 28 27371 - 28354 953 327 aa, chain - ## HITS:1 COG:PH1573 KEGG:ns NR:ns ## COG: PH1573 COG0309 # Protein_GI_number: 14591353 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Hydrogenase maturation factor # Organism: Pyrococcus horikoshii # 1 327 3 326 326 155 32.0 9e-38 MEIGKLSNEELKNYVLKNITVNRDEVLFGADIGVDTAVLDFKDNLIVASTDPITGATNDI GKLAINVSCNDIACECAEPVGVLISVLLPPNATLDELDAIIKDASRECEKLNLNIVGGHT EVTDAVNRIVVTTTVLGKVKRELLPKINRIESGDVIAISKYIGIEGTCIAYNERKNELDK ILSKKDKIEICSMSEMLSVVNESKIAKDYNVKFMHDITEGGLYGALWESSNVIKKAIEID KNLVPIKNSTKKISKIFDIDVFRFISSGSMIFIFSKEDFLEFKLKCEKNNILITEIGIIK EGSDLLIKGENREVVLEATVDELYKIV >gi|289656145|gb|ADCS01000045.1| GENE 29 28595 - 29920 1241 441 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|299144139|ref|ZP_07037219.1| ## NR: gi|299144139|ref|ZP_07037219.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 441 1 441 441 640 100.0 0 MSKNFAYLIFDDYCFDFISNNFMKRVEIPRNILIDGIIVDKNYLYYILKKFFENNDISEK EFIIFNQSSKIFSLKLKLPKISEEDIRSMIGYEIENLLPIKLSEYEFVYTYTINSEINVD VRVARKDFIADFEDVFKNLNKKLKGFYFFNDFCEDTKFTNFISLNFGHTLIKNSDVNKSI YNADFYEIFNKYNLEYFVSKDIMEKKFVEFEGNTILKIENNFDLILYKNINLINKSLEYG ATLFTGNLIIDKTKTELEKISNEYFFEIDYKKFNPNKKLNFIKEQKKKVSKIYFYALIFF VLNFLLYIYISNNINIRESELNELNNNKEILDNRISELNYDELKQKNEKLLKYIEEDNEL REKQKSAVDFGDLFLELEDLEDDEILFTDYYYYNAMYVNGIAKNEKKIEKILGDIKHKSE LLQSDIEDGVIKFKIKIEIMN >gi|289656145|gb|ADCS01000045.1| GENE 30 29917 - 30618 476 233 aa, chain - ## HITS:1 COG:TM1696 KEGG:ns NR:ns ## COG: TM1696 COG1989 # Protein_GI_number: 15644444 # Func_class: N Cell motility; O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, prepilin signal peptidase PulO and related peptidases # Organism: Thermotoga maritima # 1 226 1 225 240 69 27.0 5e-12 MLYIIVFIFGSILGSAIGAYIYRRKNLKSFLIGRSKCEICGKQIPFYYNIPILSYIILKG KCKNCKNKIPVYIFMCEIIMAILTTILYINYGFQFKFLLRLLELILLLIISVTDIREKAV YTIDIFALFSTEFFIKIYYGDVMLNSIKMMVLLGMIYFLIYYLSKAMGEADVILGAVSGF FATNFYEVFKIFRNSFMVAAFVVILLVFLKNKGAKEKIAFCPYIAISILMVII >gi|289656145|gb|ADCS01000045.1| GENE 31 30618 - 30977 567 119 aa, chain - ## HITS:1 COG:no KEGG:Clos_1635 NR:ns ## KEGG: Clos_1635 # Name: not_defined # Def: hypothetical protein # Organism: A.oremlandii # Pathway: Two-component system [PATH:aoe02020] # 6 110 13 121 131 61 41.0 7e-09 MKKLKGFTLVELVVVIAIILILVSIAVPKYEKSNLSAQAAAHNVNVKEIKNAAILYLIEH PNEKNVTIEKLSDYFENGIPKPAKALNQENFQISVDDNSNITVTPGTVKVNGKNLEVEK >gi|289656145|gb|ADCS01000045.1| GENE 32 30989 - 32170 1069 393 aa, chain - ## HITS:1 COG:DR1863 KEGG:ns NR:ns ## COG: DR1863 COG1459 # Protein_GI_number: 15806863 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, component PulF # Organism: Deinococcus radiodurans # 2 390 3 401 406 188 28.0 2e-47 MIFKYKALDFKDNLIEDRLEANSEKEAISILRSRNLRPIKIVEINKINVDIVLKRRTFNN EDLHILLYQLYVLVNAKNTIPSAFRVLLKSYSGKKNKILKKVYQDLLSAKPLSDALKESG EFPNLVVNMIGVGENSSNMILILKNLSEYYLNKVKLDKKIRNALSYPILLFVVTFFIVNF LMLNILPTFAEVFKNSGAELPYITQILINISTFINKNIIIIILNFLIAILLLEIFFKTYR GRYTLDKIKLKNKFYKTIIVKRFVNMLNYLISSKATMSNSLEIIIDSTENFVVKEHIKNA IRDLYDGISLSDSLRNTGLFSEAALSMLNIGEETSELDNILRALDDYYEHEIYFKSQKYV SLVEPIIILVLSIFVGFIVISIAMPMFDLVNRI >gi|289656145|gb|ADCS01000045.1| GENE 33 32167 - 33618 1529 483 aa, chain - ## HITS:1 COG:gspE KEGG:ns NR:ns ## COG: gspE COG2804 # Protein_GI_number: 16131205 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB # Organism: Escherichia coli K12 # 93 475 92 483 493 321 41.0 2e-87 MNFISDNVIGIVNKDISMKYNVVPKLENNSNIVFWSTEIDQNTQLYLEILLNKTITFEIC SDEELINHRKSVYSVSDMSILKSSLEDFESRVEIESGELELGEKSKVSEFLNNIIFYAIE NKCSDIHIDGLINSSLIRVRIDGILMDLFEIKKSVIKFIINRIKVLSNLDYTVKNIPQDG RFSFNYLGKNIDIRVAITPTIYSEKVVLRILDRENVLFTKKGIGLHGDKLKAVETLIKQP NGLILVCGPTGSGKTSTLYTLLKSIQSEDINILTIEDPVEYKIEGINQLEINEKVGFDFN SGLKTILRLDPDKIMVGEIRDKETASTSLRASITGHLVLSTLHTNDSPSAIYRLKDMGIE SYLISAGIIGIISQRLVRKLCDCKIKEKKYIDIFDEEMEIYKKCGCPKCANSGYAGRKAV FEILILDDELKEALNSSISLTEFRKLCKKHNMISLKESMKELLLEGITSLDEVYKNIITI GDL >gi|289656145|gb|ADCS01000045.1| GENE 34 33630 - 34295 640 221 aa, chain - ## HITS:1 COG:BH2467_2 KEGG:ns NR:ns ## COG: BH2467_2 COG0551 # Protein_GI_number: 15615030 # Func_class: L Replication, recombination and repair # Function: Zn-finger domain associated with topoisomerase type I # Organism: Bacillus halodurans # 83 221 1 138 140 152 55.0 5e-37 MEERAIGRPSTYAPIISTLLSRYYVVIEDKKILPTELGITVNEILCDNFSDLINEQFTAN MEADLDKIADGELEWRNLIRNFYVKLEEDLKIADSKIEKIEIRDEETDIKCEKCGRNMVI KMGRYGKFLACPGFPECRNTKSLVEKIGLKCPKCGGDIVIKRSKKGRVFYGCDNFPKCDF VTWNKPIDKICPKCGEVLTEVVTKKGNLIKCSNKDCNYVEK Prediction of potential genes in microbial genomes Time: Fri May 27 07:43:28 2011 Seq name: gi|289656144|gb|ADCS01000046.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.46, whole genome shotgun sequence Length of sequence - 23057 bp Number of predicted genes - 27, with homology - 27 Number of transcription units - 3, operones - 3 average op.length - 9.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 2 - 221 333 ## COG0550 Topoisomerase IA - Prom 249 - 308 6.3 - Term 302 - 332 1.2 2 1 Op 2 . - CDS 343 - 1320 222 ## PROTEIN SUPPORTED gi|167856514|ref|ZP_02479226.1| 50S ribosomal protein L1 - Prom 1358 - 1417 12.2 3 2 Op 1 9/0.000 - CDS 1802 - 2590 875 ## COG0327 Uncharacterized conserved protein 4 2 Op 2 5/0.000 - CDS 2575 - 3276 725 ## COG2384 Predicted SAM-dependent methyltransferase 5 2 Op 3 31/0.000 - CDS 3273 - 4424 1575 ## COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) 6 2 Op 4 3/0.000 - CDS 4438 - 6243 1996 ## COG0358 DNA primase (bacterial type) 7 2 Op 5 . - CDS 6252 - 7265 1067 ## COG0232 dGTP triphosphohydrolase 8 2 Op 6 4/0.000 - CDS 7277 - 8092 917 ## COG1806 Uncharacterized protein conserved in bacteria 9 2 Op 7 2/0.000 - CDS 8103 - 8735 669 ## COG0517 FOG: CBS domain 10 2 Op 8 19/0.000 - CDS 8749 - 10824 2257 ## COG0751 Glycyl-tRNA synthetase, beta subunit 11 2 Op 9 3/0.000 - CDS 10817 - 11704 1111 ## COG0752 Glycyl-tRNA synthetase, alpha subunit 12 2 Op 10 16/0.000 - CDS 11721 - 12422 615 ## COG1381 Recombinational DNA repair protein (RecF pathway) 13 2 Op 11 6/0.000 - CDS 12422 - 13312 998 ## COG1159 GTPase 14 2 Op 12 3/0.000 - CDS 13305 - 13712 486 ## COG0295 Cytidine deaminase 15 2 Op 13 11/0.000 - CDS 13724 - 14431 910 ## COG0818 Diacylglycerol kinase 16 2 Op 14 17/0.000 - CDS 14437 - 14883 483 ## COG0319 Predicted metal-dependent hydrolase 17 2 Op 15 . - CDS 14888 - 15880 1402 ## COG1702 Phosphate starvation-inducible protein PhoH, predicted ATPase - Prom 15901 - 15960 5.9 - Term 15942 - 15970 -0.1 18 3 Op 1 . - CDS 15974 - 16510 530 ## gi|299144160|ref|ZP_07037240.1| conserved hypothetical protein 19 3 Op 2 3/0.000 - CDS 16519 - 17511 1579 ## COG4864 Uncharacterized protein conserved in bacteria 20 3 Op 3 2/0.000 - CDS 17508 - 18788 1379 ## COG1030 Membrane-bound serine protease (ClpP class) 21 3 Op 4 . - CDS 18817 - 19272 331 ## PROTEIN SUPPORTED gi|42519249|ref|NP_965179.1| 30S ribosomal protein S21 22 3 Op 5 . - CDS 19290 - 19472 245 ## PROTEIN SUPPORTED gi|169824471|ref|YP_001692082.1| 30S ribosomal protein S21 - Term 19488 - 19514 -0.6 23 3 Op 6 1/0.000 - CDS 19565 - 19903 492 ## COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases 24 3 Op 7 5/0.000 - CDS 19906 - 21216 512 ## PROTEIN SUPPORTED gi|227413264|ref|ZP_03896450.1| SSU ribosomal protein S12P methylthiotransferase 25 3 Op 8 9/0.000 - CDS 21213 - 21929 835 ## COG1385 Uncharacterized protein conserved in bacteria 26 3 Op 9 . - CDS 21922 - 22839 670 ## PROTEIN SUPPORTED gi|158320270|ref|YP_001512777.1| ribosomal protein L11 methyltransferase - Term 22850 - 22882 -0.8 27 3 Op 10 . - CDS 22883 - 23056 325 ## gi|299144169|ref|ZP_07037249.1| chaperone protein DnaJ Predicted protein(s) >gi|289656144|gb|ADCS01000046.1| GENE 1 2 - 221 333 73 aa, chain - ## HITS:1 COG:SA1093_1 KEGG:ns NR:ns ## COG: SA1093_1 COG0550 # Protein_GI_number: 15926833 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Staphylococcus aureus N315 # 1 73 1 73 571 99 65.0 1e-21 MAKNLVIVESPTKAKTIKKMLGSTYKVVASVGHIRDLPKSKLGIDVDNNFEPSYINIRGK GDIIKGLKKDAKE >gi|289656144|gb|ADCS01000046.1| GENE 2 343 - 1320 222 325 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|167856514|ref|ZP_02479226.1| 50S ribosomal protein L1 [Haemophilus parasuis 29755] # 177 324 29 174 175 90 33 1e-17 MLNINKKVPMGVIALCAVSLFGLKDTGIFIRDHVQTTYSGNKVYFELGEKAEIVEKAKDG YIVAKGKARVTIPTEKIELTEVTTSIYKVSKNTSIKDKEGQIIRNLFLGEEVVYLALRGE SFLVKCSDNVEGEVDKNCLELVSTTTKKIEPKKAIKVVEKKTNVVQVNILSNEEKEIQKV ATAKITTSNVEKAKVVVPNVENGKVKIILDSAFDKLGTTYVYGSAGDEGYDCSGLIYAVY KKQMGINLPRSSSEQSEYGIQIERENLQAGDLVFFNTTGGGVSHVGIYIGNGEFIHASSG KGKVVVSNLNEKYYDSHYVNATRVL >gi|289656144|gb|ADCS01000046.1| GENE 3 1802 - 2590 875 262 aa, chain - ## HITS:1 COG:SPy0931 KEGG:ns NR:ns ## COG: SPy0931 COG0327 # Protein_GI_number: 15674951 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pyogenes M1 GAS # 8 253 6 255 262 124 34.0 1e-28 MEYDVIKLIEFLENWANPSFQEEWDNSGWQILFDEEKTASIVVALDIDDRVIDFAIEKNS KLIITHHPMFFRGIKNINFSSYFGENILKLIENKISVYSSHTSLDIAINGVNDCLAEFLE LDNCVGLSEMENGCYIGKIGTNNKFNSLAEIKNKFEDELKIDNIKLYGKYPSKLDIIAIC GGSGSDFISDAVKHNANLYITGDIKYHDGQYAYENNIAVMDIGHYGSEKLIIEKLSYEYK NKFEIDVYSLTSSNFELELDRV >gi|289656144|gb|ADCS01000046.1| GENE 4 2575 - 3276 725 233 aa, chain - ## HITS:1 COG:CAC1302 KEGG:ns NR:ns ## COG: CAC1302 COG2384 # Protein_GI_number: 15894584 # Func_class: R General function prediction only # Function: Predicted SAM-dependent methyltransferase # Organism: Clostridium acetobutylicum # 2 229 1 226 229 148 41.0 8e-36 MINISNRLKKISEYVDRNSKVADIGTDHGFVPAFLVSNNISDYVVCSDISFSSLKKSVEL VKKLNYSDKIFPRLGSGLEVVEDGEVDTVIIAGMGGNLIVDLLHKEISKVKNLKKLILQP MQGQEFLRKYLYCTGYEILDENIVYEDEKFFEIIVVKYTGIRTEVNEIYYEIPKLMYERK ENILKLFLENKIKYNKSIIKILKEGSNTDRVLNRISKLESKNKSYEELLWNMM >gi|289656144|gb|ADCS01000046.1| GENE 5 3273 - 4424 1575 383 aa, chain - ## HITS:1 COG:BH1376 KEGG:ns NR:ns ## COG: BH1376 COG0568 # Protein_GI_number: 15613939 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) # Organism: Bacillus halodurans # 15 383 15 372 372 431 69.0 1e-121 MQDTDSKIEDGNLQSKDSIIINLKNNGKKKGNLTYDEIINALEEIPMESDEIELLYQDFE KSGIEILTDDKIDDDILDDDKLDEDILDVRKDDEDDLSKEDLSVPKGISVDDPVRMYLKE IGKIPLLTGDEEIDIAQRMEVGDEDAKQELAEANLRLVVSIAKRYVGRGMSFLDLIQEGN LGLMKAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVQRQ LVQELGRDPLPEEIGKEMNLEVEKVREIQKIAQEPVSLETPIGEEEDSHLGDFIPDDEIL SPSDAATFTLLKEQLEDVLQTLTDREKKVLTLRFGLDDGRARTLEEVGKEFDVTRERIRQ IEAKALRKLRHPSRSKKLKDFLE >gi|289656144|gb|ADCS01000046.1| GENE 6 4438 - 6243 1996 601 aa, chain - ## HITS:1 COG:CAC1299 KEGG:ns NR:ns ## COG: CAC1299 COG0358 # Protein_GI_number: 15894581 # Func_class: L Replication, recombination and repair # Function: DNA primase (bacterial type) # Organism: Clostridium acetobutylicum # 4 594 5 594 596 343 36.0 4e-94 MSYIIDDELLNDIRDKIDIVNLISQYVHLKKSGSNYMGLCPFHGEKTPSFSVSPSKGIFH CFGCGVGGDQISFIMKRENLGFREAVKFLADKYGIELKNTSESINTQLINKKNRAYEANR EAAKFFMLSLSRSKSAYMYLKNRNIDNDTIRDYGLGYAPDSWNELFNYLSKKGFNGDELE EFNLVSKSKSGKFIDRFRNRIMFPIIDTKKRVIGFGGRVLDDSLPKYLNTRDTIIFNKGK HLYNLNIISEKSDREKIILVEGYMDVISLYKSGINYSVASLGTSLTEEQAELIKRYGKEV YICYDGDSAGIKATNRAIDILIIQNIKPKILTLPEKLDPDEYVTKYGKLSFEIELKNSQP YLEYKISKIRENYNIESPDGLSGFTSEVSKLISRIKNPIEMDIYVDKISKQYGVSKNSII NYILILNRNKKNKEFNKKTYEYKNKEVKDKKISINTRYIAEDQLIKYALYSNDNFELIDK KINSCEFTKSECRIIFEELAEYYRQGIDFKDVLKNLVDKKLISQDYADKINIIEINQYSS DKIISELIGTLKKDSLEYRRKDILQDIKNLEKEEPSKKNSEILKLLIDELNEINKTINIS Q >gi|289656144|gb|ADCS01000046.1| GENE 7 6252 - 7265 1067 337 aa, chain - ## HITS:1 COG:RSc2968 KEGG:ns NR:ns ## COG: RSc2968 COG0232 # Protein_GI_number: 17547687 # Func_class: F Nucleotide transport and metabolism # Function: dGTP triphosphohydrolase # Organism: Ralstonia solanacearum # 15 330 18 382 387 213 38.0 3e-55 MNPREKREKLEHEILYNFASFSDESRGRQKFEEKCNLRTEYQRDRDRILHSKAFRRLKHK TQVFISPEKDHFRTRLTHTLEVSQIARTIARSLELNEDLIEAMALGHDLGHTPFGHSGEK VLNKLNQKGFKHNEQSLRMVDYLEVGENRIGLNLTWEVRDGIVNHSGDNVASTLEGKILK YADRIAYINHDIDDAIRAGIISKTDLPTDLIELLGDSHSKRINKMINSIVRESYHKNSIY MEPEIEKATMELRQFMFKNVYLDKTVKSEDDKIEHIIMSLFDYYKNDISKIPAENLKVYE NIEHTEEDIICDYIAGMTDIYVVDLYKSLYIPKGWSK >gi|289656144|gb|ADCS01000046.1| GENE 8 7277 - 8092 917 271 aa, chain - ## HITS:1 COG:BH1373 KEGG:ns NR:ns ## COG: BH1373 COG1806 # Protein_GI_number: 15613936 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 7 269 9 270 270 252 50.0 5e-67 MSDNSIIIYVISDSIGETGELIAKGSIRQFESENFEIKRYPYHNTIEQIEPILLEAAQST RSLIIYTNVVQSTRDFIEKKAEELSLHTVDVMGSPMSHLEAILGYSPVREPGLIRRLDDN YFKKVEAIEFAVKYDDGKDPRGAKKADICLVGISRTSKTPLSMYLANKLYKVANIPLVPE VPVPAEVYEKDINRVIGLTCNPEKLITIREERLKSLGLSSSAKYANIERIKAELKYSKQI MEELGCFVIDVSNKAIEETAEIIIDHMEKVL >gi|289656144|gb|ADCS01000046.1| GENE 9 8103 - 8735 669 210 aa, chain - ## HITS:1 COG:SA1393 KEGG:ns NR:ns ## COG: SA1393 COG0517 # Protein_GI_number: 15927144 # Func_class: R General function prediction only # Function: FOG: CBS domain # Organism: Staphylococcus aureus N315 # 1 208 1 207 207 169 45.0 3e-42 MDFTKRQLDIIEIVKGRAPITGDDIARELNISRATIRPDLSVLTRLNILGARPKVGYFYI ENSNTSIFLREVDKILVKETMSVPVVMDENTSIYDVIVELFLENVSSIFITSNGFLTGVV SRKDLLRTTLGKMDLNNTPVAMIMTRMSSIVYVTENSSIIEAAIKINDRAVDSLPVVRIT DGDLNKLKVIGRFTKTNVNRIFVELVKEGY >gi|289656144|gb|ADCS01000046.1| GENE 10 8749 - 10824 2257 691 aa, chain - ## HITS:1 COG:BH1371 KEGG:ns NR:ns ## COG: BH1371 COG0751 # Protein_GI_number: 15613934 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glycyl-tRNA synthetase, beta subunit # Organism: Bacillus halodurans # 4 689 6 691 693 480 38.0 1e-135 MNRYLLEIGVEELPARFVNLAIAQMEDKAKKLLEENDLKYDSVEVYATPRRLTLIINDVE LYQKDLDLEVKGPAKKIAFDEEGNPTKPLLGFMKSQNIAPENIVIKEFKGEEYVYSNIHK KGDSFESIVSKNIAELIKSINFPKNMKWGGKNIKFARPIRWIVSLLNNKVVPFEFEGIGV SNITRGHRFLGSSNIVVDEVDNYESLLKDNFVILNQNERREIIKYGSAKIAKSIGGEIYE DKDLLEELTYIVEYPNPIMGSIKDEYLQLPKEVITTPMRDHLRFIPIHASNGELLPNFIT IRNGNDDYKDIVIAGNEKVLGARLEDAKFFYNDDISKSLESYIDSLKGVMFQQKLGTMYD KSERVSKLAQKIGENLEVADETIESIKRSAKLSKADLTTKMVQEFTELQGVMGSIYATKS GESEIVSQAIYEQYLPRFSNDLLPKSTTGSILAIADKIDTITGLFAIGLIPTGSQDPFAL RRNARGIINIIESNKWDILIGDIVDYSLYIYTSELSLVFDYEKVKNSIIEFFAGRLKNML QEDDIRYDIIDSVLSDSESVVNIFKKANELNKYFKEDKSSLIDAYTRLHNMAKKKDRDIE FEALLLSEPDEKALYEAQSKLLENVNKLIDDKEYIEALNLMDNLVVLINNYFDNIMVLVD DEKIKFNRLEMISKIDFVMRRILNIEKIVTD >gi|289656144|gb|ADCS01000046.1| GENE 11 10817 - 11704 1111 295 aa, chain - ## HITS:1 COG:BS_glyQ KEGG:ns NR:ns ## COG: BS_glyQ COG0752 # Protein_GI_number: 16079581 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glycyl-tRNA synthetase, alpha subunit # Organism: Bacillus subtilis # 1 295 1 295 295 440 66.0 1e-123 MYFQDLIQNLQSYWKDKGCVIMQPYDVEKGAGTMNPSTFLRALGPEEWRTCYVEPSRRPA DGRYGENPNRLYQHHQMQVILKPSPENVQELYLDSLKAIGIDALKHDIRFVEDNWESPTL GAWGLGWEVWLDGMEVTQFTYFQQVGGVNCELESAELTYGLERIAMYLQNVNSVYEIKWN EKLTYGDVFKMSEYEHSVYSFETADIDMLKNLFTVYEKESMRIIENGLVLPAYDYCLKCS HAFNVLDARGAISVSERAVYISRVRNLARAVALQYLKEREEMGYPLLNKVGVGNE >gi|289656144|gb|ADCS01000046.1| GENE 12 11721 - 12422 615 233 aa, chain - ## HITS:1 COG:lin1497 KEGG:ns NR:ns ## COG: lin1497 COG1381 # Protein_GI_number: 16800565 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecF pathway) # Organism: Listeria innocua # 5 151 3 149 255 71 28.0 1e-12 MEKIRTELIVLSEQKYGESSKIIRVFSKEKGKITILAKGALNAKSPLVSITQLFSHSNAY INKGRSFYYIESATILNSNFKIRKKYETLIISSYILELLDKTFLEGEVNKKIFDLTVKTL KIIQNINYIMPIILAFELKYITFLGYRPSLELQEKNNYFSIKDGGIVDLDENQFGCYLLD KKDIYYLKKLLYTSLDEIDERYDSDKLIYLHNILIEYIKYNLDINEINSLALI >gi|289656144|gb|ADCS01000046.1| GENE 13 12422 - 13312 998 296 aa, chain - ## HITS:1 COG:BH1367 KEGG:ns NR:ns ## COG: BH1367 COG1159 # Protein_GI_number: 15613930 # Func_class: R General function prediction only # Function: GTPase # Organism: Bacillus halodurans # 2 296 8 300 304 306 51.0 3e-83 MFKSGFVTIIGRPNVGKSTLLNCIVGQKISAISNKAQTTRNKITFIYTDEKMQVIFLDTP GIQMPKNKLGDYMLKVSESTLSEVDVITYIVDCSKKIGKLDNYIIKELKEKNLKTPIVLL VNKIDEVAKEELFEIIKMYDDIGIFKEIIPISALKNDGVESYLKTLAKYIPIGPMYYPED MVTDHPEKFIVGEIIREKALRFLDEEIPHGIAVSIEKMRERKEKEITDIEAVIYIERESH KKIVIGKNGQMLKKIGSAARTEIENLLDTKVNLNLWVKVEKNWRDLDNKVKYFGYK >gi|289656144|gb|ADCS01000046.1| GENE 14 13305 - 13712 486 135 aa, chain - ## HITS:1 COG:CAC1544 KEGG:ns NR:ns ## COG: CAC1544 COG0295 # Protein_GI_number: 15894822 # Func_class: F Nucleotide transport and metabolism # Function: Cytidine deaminase # Organism: Clostridium acetobutylicum # 1 130 1 131 132 123 53.0 9e-29 MEDKKLIELAIEAKNNSSYTPYSNFRVGAAVEMEDGSVYKGGNIEIASYSPTNCAERTAI FTAISEGKRKIKKIAIVGDAEYTFPCGVCRQVIREFGVNAKIIIANSVERYKVFTLEELL PYSFGPEDLEGVKNV >gi|289656144|gb|ADCS01000046.1| GENE 15 13724 - 14431 910 235 aa, chain - ## HITS:1 COG:CAC1294_1 KEGG:ns NR:ns ## COG: CAC1294_1 COG0818 # Protein_GI_number: 15894576 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Diacylglycerol kinase # Organism: Clostridium acetobutylicum # 1 147 1 147 157 99 38.0 4e-21 MKKGGFIASFNYAVQGIVSALKTEKNMKFHYIAALGVIFISLFMDFTRVEFMFLLLAIIF VITSEMFNTAIERTIDLVVQDYNPIAKYVKDISAGAVLIASVNALVTAYLLFYKRMANMG DLLLIKIKNSDEHLSFVAIIIVVMLTIGGKYLRAKKNRGTYFQGGAISGHTSIAFCAATI ISLVAEKTLITIASFGIAFLVGESRIEGKIHKISEVVSGAILGICVAIFIFKVFG >gi|289656144|gb|ADCS01000046.1| GENE 16 14437 - 14883 483 148 aa, chain - ## HITS:1 COG:CAC1293 KEGG:ns NR:ns ## COG: CAC1293 COG0319 # Protein_GI_number: 15894575 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase # Organism: Clostridium acetobutylicum # 3 148 2 166 166 99 41.0 2e-21 MNILFDNRQNEIEIDENIIELIKKSILEVIKSEKLDENIMVSVSFVDDEEIQELNKNFRG VDSSTDVLSFPIDDEFQIEERILGDVVINTKRVIEQAQEFRHSNEREMSYLTVHSVLHLL GYDHIEEEDRLIMRSKEKIIMDNLKIYR >gi|289656144|gb|ADCS01000046.1| GENE 17 14888 - 15880 1402 330 aa, chain - ## HITS:1 COG:BH1361 KEGG:ns NR:ns ## COG: BH1361 COG1702 # Protein_GI_number: 15613924 # Func_class: T Signal transduction mechanisms # Function: Phosphate starvation-inducible protein PhoH, predicted ATPase # Organism: Bacillus halodurans # 4 317 5 318 320 321 53.0 1e-87 MAEKLVDISILNNDMVAQLYGKLDEHIYLIEEQFNVIIKCENDEISIKGEEDTVENVAIL IENLKEFILRQKRLEKTDLQYSINLIKSGNMTSIVELLNETIVYTSMGKPIKAKTLGQKG YLDAIKDNDVVFGIGPAGTGKTYLAVAAAVKAFKNKQVNRIILTRPAVEAGESLGFLPGD LQMKVDPYLRPLYDALFEMLGYDNYTKYVEKGLIEVAPLAYMRGRTLDSAFVILDEAQNT THEQMKMFLTRLGYGSKAIITGDITQTDLPKGRPSGLKTVLNILKGVRGIGIIYLGNNDI VRHPLVQRIINAYDKYENDIGKEREYNKKG >gi|289656144|gb|ADCS01000046.1| GENE 18 15974 - 16510 530 178 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|299144160|ref|ZP_07037240.1| ## NR: gi|299144160|ref|ZP_07037240.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 386 str. F0131] # 18 178 18 178 178 224 100.0 2e-57 MKIINILILLIPLIISLSKDKKHRDGKSSKRKSDSRFKYEKELLKMNNSKGLKNSKKILS TIKNNVFEEFLDSLSTSDKGKLKNNSNDLYGYDKDGYPTMKAQELKTNNYEDRDLRLEKI KEERNRILNREDAFSVENSVDTETLEISEEDILNDFTDKELVKAVIMKEILDKPVSLR >gi|289656144|gb|ADCS01000046.1| GENE 19 16519 - 17511 1579 330 aa, chain - ## HITS:1 COG:BS_yqfA KEGG:ns NR:ns ## COG: BS_yqfA COG4864 # Protein_GI_number: 16079592 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 11 330 10 329 331 408 71.0 1e-114 MIYVGNILGGGVIILVIILLILFFSFVPVGLWITAFFSGVKIKISTLIGMKLRRVRPGRI VNPMIKATKAGLNLEIENLEGHYLAGGNVNTLVDALIAAERANIPLQFERGAAIDLAGRN VLEAVQVSVNPKVIETPNISAVAQDGIEVIVKAKVTVRANIDRLVGGAGEETIIARVGEG IVTTVGSSKTYKAVLENPDSISKVVLEKGLDSGTAFEILSIDIADVDVARNIGARLQTDQ AEADKRIAEAKASERRAMALAREQEMKAEVESMRAKVVEAQSQVPLAMAEALRNGNIGVM DYYKIKNINSDTDMRDAISKVTDTSKNKDK >gi|289656144|gb|ADCS01000046.1| GENE 20 17508 - 18788 1379 426 aa, chain - ## HITS:1 COG:BH1356 KEGG:ns NR:ns ## COG: BH1356 COG1030 # Protein_GI_number: 15613919 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Membrane-bound serine protease (ClpP class) # Organism: Bacillus halodurans # 4 426 15 445 445 216 30.0 9e-56 MKKILLLLFLFLTLISNEAFANENTPVIIPIKSEINSAMATYVRDSIKNAEDKKSPLIIF EIDTYGGSIIAAEKIKNYIIDSKIPTVAFVNNKAESAGVLITIACKNVYMSKTATIGSAE TIPKTEKNISFWKGMLRDTAQYRGRNEQIIESMADSDIYIPMIIEKGKLTNLTSKESLDL GISDGVANNYEDILKQFNLDGKKYEIAKMDLTVKVINIVSNQTVSTILLILGMLGFVVEI FTPGFGVGGIISIIAFSLFFIGNLMAGNSNWYSIVIFLVGIVLIIIEIIIPGFGIVGIGG IIFVISGLVLAMKTLEIAITSIAIALIITILCGIYLIKKGKKLKFINNVTLSKSCSSEDG YISVDYAKLDVGRNGKTISILRPTGYIEIDGKKYEAIAYNGFIEKDVEVVVCKIEAFKIF VRRKEE >gi|289656144|gb|ADCS01000046.1| GENE 21 18817 - 19272 331 151 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42519249|ref|NP_965179.1| 30S ribosomal protein S21 [Lactobacillus johnsonii NCC 533] # 1 147 1 147 147 132 44 3e-30 MSLKEKLMEDLKTSMKNKEKLRKDTITMARAAIKQREVDERIELSDEDIIEVLTKQLKEK KASIEDFLKGNRQDLIDQTNAEIEILLEYLPKQLTEEELTEIVKQTIEENNISSAKEMGN LMKCIMPKIKGKADGKMVSKIAQNLLNKPGV >gi|289656144|gb|ADCS01000046.1| GENE 22 19290 - 19472 245 60 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169824471|ref|YP_001692082.1| 30S ribosomal protein S21 [Finegoldia magna ATCC 29328] # 1 58 1 58 59 99 81 3e-20 MSEIRVGENESLDNALKRFKRQCATSGVLKEARKREHYEKPSVRRKKKSEEARRKKHSRY >gi|289656144|gb|ADCS01000046.1| GENE 23 19565 - 19903 492 112 aa, chain - ## HITS:1 COG:PA0656 KEGG:ns NR:ns ## COG: PA0656 COG0537 # Protein_GI_number: 15595853 # Func_class: F Nucleotide transport and metabolism; G Carbohydrate transport and metabolism; R General function prediction only # Function: Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases # Organism: Pseudomonas aeruginosa # 1 112 1 112 112 134 51.0 4e-32 MECLFCEIINGSIPSECIYEDELVYAFNDIDKQAPIHFLIVPKEHIKSADELSEKHKELI GHIFLVAKNLCGKFGLENGYRIVNNCKEDGGQTVNHLHFHVLGGRSLNWPPG >gi|289656144|gb|ADCS01000046.1| GENE 24 19906 - 21216 512 436 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227413264|ref|ZP_03896450.1| SSU ribosomal protein S12P methylthiotransferase [Dyadobacter fermentans DSM 18053] # 1 388 6 384 436 201 32 3e-51 MMKKSFSILTLGCKVNQYESEAMAELFENEGYLNVDFETEVSDIYIINTCTVTNLSDRKS RQFIRRAKRDNPNSIVAVVGCYSQTSPEEVSSIPGVDIIIGTTERNRIVELCEEFSNNKK QINIVRSLKSDHEFQTINTSKENDMTRAYIKVQDGCNRYCTYCIIPFARGNIRSRSIEDS MNEARKLAKAGYKEIILTGIHIGSYGYDIGKERLIDLIENIASIDGIERIRLSSIEPRTI TDDFMKRVVATNKLCDHFHLSLQSGSNKILKEMNRKYTREEYFDKTQIIRSYMPYAGLTT DVIVGFPGETDDDFLDSYDLIKKVEFSKVHVFKYSKRDGTVAAKMKNQIDGNIKNKRSSI LLALSDELMKKFSEKNLNVIKSVLFEEKLVNSSYVGYTTNYIRCFTNSKEDLKNKIKNVN IVNIECDPVEVSVIGG >gi|289656144|gb|ADCS01000046.1| GENE 25 21213 - 21929 835 238 aa, chain - ## HITS:1 COG:CAC1285 KEGG:ns NR:ns ## COG: CAC1285 COG1385 # Protein_GI_number: 15894567 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 1 234 1 243 250 136 38.0 4e-32 MYRFFENANFENTITLSKENSHHYKTVLRIREEEIVEVGANNGVFKAIFDSCCGDFIILK KVEEVSAERESDVKLILLQGILKGDKMDQALKSSVEVGVCEIYPLNTKRVVAQIDHKEYK KVQRWQRVVEAAAKQSKRDYIPRVNTPIDLEGIEEILENRELIVPYENEDDDRLVDIKLE NKNVILVIGPEGGFEETEIDYLKSLGAKIVSLGNRILRAETAAVCASFYIIYNFERGK >gi|289656144|gb|ADCS01000046.1| GENE 26 21922 - 22839 670 305 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|158320270|ref|YP_001512777.1| ribosomal protein L11 methyltransferase [Alkaliphilus oremlandii OhILAs] # 1 301 1 310 313 262 46 1e-69 MKYIELIINTIDNNREFVLNELYNRDIYVFEEDSIEIIEELAQNEKSWDFVDEDVFSIGK GNLILKCYFSIEEKERAEEIKFAIENKKLGSADINITDDEDWANNWKKYYHPIEIGEKIL IKPTWEEYENKDRIVIDIDPGMAFGTGTHETTYMCIEALEEYVKQDNIVFDIGCGSGILG IAAIKLGAEKVIAVDIDQKCIEASLENANMNNVSEKIKVYKGNLLDVVSGNADIIVSNII AEIIVDMIGDLKRHLTSNGIFISSGIIVEKIDMVKNALIKEGFEIIEIRENNGWSLIVGR VIKNV >gi|289656144|gb|ADCS01000046.1| GENE 27 22883 - 23056 325 57 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|299144169|ref|ZP_07037249.1| ## NR: gi|299144169|ref|ZP_07037249.1| chaperone protein DnaJ [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 57 316 372 372 107 100.0 2e-22 SYVRREGKGDLYFTVDIIVPKKITDEQKKLLETLREKSKDIHEERKGFFDKVKEFFE Prediction of potential genes in microbial genomes Time: Fri May 27 07:43:51 2011 Seq name: gi|289656143|gb|ADCS01000047.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.47, whole genome shotgun sequence Length of sequence - 23926 bp Number of predicted genes - 24, with homology - 24 Number of transcription units - 8, operones - 7 average op.length - 3.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 74 - 106 -0.8 1 1 Op 1 31/0.000 - CDS 107 - 1225 1475 ## COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain - Prom 1256 - 1315 9.8 - Term 1266 - 1308 4.4 2 1 Op 2 29/0.000 - CDS 1327 - 3135 2537 ## COG0443 Molecular chaperone 3 1 Op 3 21/0.000 - CDS 3169 - 3702 866 ## COG0576 Molecular chaperone GrpE (heat shock protein) 4 1 Op 4 . - CDS 3708 - 4739 1035 ## COG1420 Transcriptional regulator of heat shock gene - Prom 4859 - 4918 11.8 + Prom 4837 - 4896 12.3 5 2 Op 1 14/0.000 + CDS 4946 - 5488 619 ## COG0681 Signal peptidase I 6 2 Op 2 4/0.000 + CDS 5478 - 7289 2040 ## COG0481 Membrane GTPase LepA 7 2 Op 3 . + CDS 7273 - 8472 768 ## COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases 8 2 Op 4 . + CDS 8550 - 8813 261 ## PROTEIN SUPPORTED gi|227486716|ref|ZP_03917032.1| 30S ribosomal protein S20 + Term 8878 - 8909 3.4 - Term 8866 - 8897 3.4 9 3 Op 1 4/0.000 - CDS 8908 - 9909 1130 ## COG1466 DNA polymerase III, delta subunit 10 3 Op 2 . - CDS 9875 - 12163 1488 ## COG2333 Predicted hydrolase (metallo-beta-lactamase superfamily) - Prom 12263 - 12322 7.8 - Term 12263 - 12310 4.6 11 4 Op 1 19/0.000 - CDS 12337 - 13185 925 ## COG0083 Homoserine kinase 12 4 Op 2 . - CDS 13182 - 14636 1378 ## COG0498 Threonine synthase 13 4 Op 3 22/0.000 - CDS 14639 - 15901 1487 ## COG0014 Gamma-glutamyl phosphate reductase 14 4 Op 4 . - CDS 15873 - 16664 802 ## COG0263 Glutamate 5-kinase - Prom 16689 - 16748 9.2 15 5 Tu 1 . - CDS 16777 - 17622 510 ## CPR_0879 CAAX amino terminal protease family protein - Prom 17699 - 17758 9.4 - Term 17882 - 17927 5.1 16 6 Op 1 . - CDS 17995 - 18156 166 ## SDEG_1339 hypothetical protein - Term 18175 - 18217 2.4 17 6 Op 2 . - CDS 18256 - 18705 477 ## COG4405 Uncharacterized protein conserved in bacteria 18 6 Op 3 . - CDS 18799 - 19497 421 ## DSY0910 hypothetical protein - Prom 19538 - 19597 4.0 19 7 Op 1 . - CDS 19778 - 19915 113 ## COG1533 DNA repair photolyase 20 7 Op 2 . - CDS 19935 - 20477 569 ## COG4283 Uncharacterized conserved protein 21 7 Op 3 . - CDS 20484 - 20747 407 ## SZO_12740 hypothetical protein 22 7 Op 4 . - CDS 20809 - 21753 878 ## COG2378 Predicted transcriptional regulator - Prom 21809 - 21868 9.6 - Term 21823 - 21887 3.2 23 8 Op 1 . - CDS 22029 - 23579 1727 ## COG1292 Choline-glycine betaine transporter 24 8 Op 2 . - CDS 23580 - 23807 314 ## glr3066 histidine ammonia-lyase - Prom 23864 - 23923 4.2 Predicted protein(s) >gi|289656143|gb|ADCS01000047.1| GENE 1 107 - 1225 1475 372 aa, chain - ## HITS:1 COG:ECs0015 KEGG:ns NR:ns ## COG: ECs0015 COG0484 # Protein_GI_number: 15829269 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: DnaJ-class molecular chaperone with C-terminal Zn finger domain # Organism: Escherichia coli O157:H7 # 2 372 4 372 376 305 45.0 8e-83 MRDFYDILEVEKTATSEEIKKSYKKLAKKYHPDLNQGDEESETKFKEINLAYEVLSDDQK RKTYDMYGEDGINGNFQGGGNFGGFSDIFGDIFDMFGGGFRDSYTSRSSNSPIKGGDIRY DITLDFREAVFGVEKIINIRRQENCSHCSGTGAEPGTSKHTCDKCNGTGQVKIQSTSAFG RFVRVVTCDKCNGSGEIIDKPCKHCRGVGKEVISKKLNVKIPAGVDNNTIISMKGEGHVG ENGGSNGDLFIYVSVREDSVFKRNGTDLYLEIPISYMDAVLGGTIKVPTLNNLVDYEIPK GTQGGTTFKLRGEGVSYVRREGKGDLYFTVDIIVPKKITDEQKKLLETLREKSKDIHEER KGFFDKVKEFFE >gi|289656143|gb|ADCS01000047.1| GENE 2 1327 - 3135 2537 602 aa, chain - ## HITS:1 COG:CAC1282 KEGG:ns NR:ns ## COG: CAC1282 COG0443 # Protein_GI_number: 15894564 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone # Organism: Clostridium acetobutylicum # 1 602 1 615 615 724 66.0 0 MGKIIGIDLGTTNSAVAVMEGGDSIIIPNIEGNRTTPSIVAFTKDGERLVGETAKRQAIT NPDRTIQSIKRHMGSDYKVNIDGKDYTPQEISAMILQKLKSDAESYLGEKITEAVITVPA YFTDAQRQATKDAGKIAGLDVKRIVNEPTAAALAYGEDEKSDSQTVMVYDLGGGTFDVSI LELSDGVFEVHATRGNNKLGGDDFDNKVIDYIASEFKKAHGVDLKADKMSLQRLKEAAEK AKKELSSTMSTNINLPFITATAEGPLHLNMDLTRAKFDELTKELVKMTEQPVKDALKDAD MTPSDIDKVLLVGGSTRIPAVQACIKELVGKEPQKDINPDECVALGAAIQGGVLSGDVKD LLLLDVTPLSLGIETMGGVTTRLIERNTTIPTKKSQVFTTASDNQTSVDIHVLQGERQMA SDNVTLGRFQLDGIAPARRGIPQIEVTFDIDANGIVNVYAKDLGTGKEQKITITSSTNLS DEEIEKKVKEAEMFAKEDSKKKDLIEARNNADSMIYQSESTLEELKDKIKAEDKEKIEKA IESLKSVKDSEDLDEIKAKTEELTKAFYAVSEEIYKATQAQEEQKAPEEDVVDADYEVVD EE >gi|289656143|gb|ADCS01000047.1| GENE 3 3169 - 3702 866 177 aa, chain - ## HITS:1 COG:alr2445 KEGG:ns NR:ns ## COG: alr2445 COG0576 # Protein_GI_number: 17229937 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone GrpE (heat shock protein) # Organism: Nostoc sp. PCC 7120 # 33 176 82 229 248 92 39.0 3e-19 MSDNKKVKEEVVEEVNETMEELVDNSQEVTTEEDIDEIDSEVNLIKDQFLRLQADFANYK RRTEVERKEYIELGTKKVMLELIQIVDNFERAIESKGEKDTFFDGVELIYKQLMELLEKN GVTEMNSLNEKFDPNLHHAVLIEQKDGIEEGIVIEVLQKGYMIGEKVLRSAMVKVSK >gi|289656143|gb|ADCS01000047.1| GENE 4 3708 - 4739 1035 343 aa, chain - ## HITS:1 COG:CAC1280 KEGG:ns NR:ns ## COG: CAC1280 COG1420 # Protein_GI_number: 15894562 # Func_class: K Transcription # Function: Transcriptional regulator of heat shock gene # Organism: Clostridium acetobutylicum # 1 341 3 340 343 193 36.0 5e-49 MDERKIEILNAIINSYIDSPNPVGSRTISKDFNLGISSATVRNEMADLEDLGYLNKPHTS AGRIPSNKAYRFFVDHIQKEIFEYDIDFIEDYDIRDLILQNANSLDDIFKNTVKLLSDFT KCTSYVVALKKPDTEIKFIQLLNIDEYSILLLIVGNRGVVEKQIVNTQVSISDDDLHEIC KKLNEYLCGIDFQKIGGLKVVLKGSMVKYGEFISDIIKRASTFNEKVSQFDFYYDGLNNI LSFEEYYDIEKARNFIKFIEDKKSILKLINYSEKSDFDVIIGDENEDELMKNNSIIRATF RPKNQRIGQIGIIGPIRMDYRKHIKTVKLFRDNLSYVIDKIVR >gi|289656143|gb|ADCS01000047.1| GENE 5 4946 - 5488 619 180 aa, chain + ## HITS:1 COG:alr2975 KEGG:ns NR:ns ## COG: alr2975 COG0681 # Protein_GI_number: 17230467 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal peptidase I # Organism: Nostoc sp. PCC 7120 # 19 174 31 190 190 123 42.0 2e-28 MSEPKKESFLSFILIFISAFVLAFLIRQFIFNVNIVVGESMYPTLKPNDRLITLVFPLKF KSPNREDIVILDAPDESGREYIKRIIGIPGDSVKIENGKVYINDELLSENYLDNNIETPI QNQSEWHLSENEFFVMGDNRYNSSDSRIFGAIDKTSIRGIVVLRFWPISNFGIVGGLNDK >gi|289656143|gb|ADCS01000047.1| GENE 6 5478 - 7289 2040 603 aa, chain + ## HITS:1 COG:CAC1278 KEGG:ns NR:ns ## COG: CAC1278 COG0481 # Protein_GI_number: 15894560 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane GTPase LepA # Organism: Clostridium acetobutylicum # 2 600 3 602 602 840 67.0 0 MTNRQDNIRNFSIIAHIDHGKSTLADRLIEKTGMLTEREMESQVLDSMELEKERGITIKL KAIRLVHKTNDGKEYIFNLIDTPGHVDFNYEVSRSLAACEGALVVVDATQGVEAQTLGNV YLAIDQNLELVPIINKIDLPSARADEVKKEIEDIIGIDCENSPLISAKRGIGIEDVFTRI IEDIPAPNGDENAPLKALIFDSYYDSYKGVICYVRIKDGSVKPGDEIMMFSTKKVFEVVE VGVTTSGLMPLNKLSAGDVGYITASIKNVKEATVGDTITSPSTPTAMPFPGYKKVVPMVY CGIYPAEGEEYVSVREALEKLQVNDAALVFEAETSVALGFGFRCGFLGLLHMEIIQERLE REFDLNLVTTAPSVIYKITKTDGSIVEIQNPTNMPSPAEILKMEEPIVKAEIMTPTDYVG AIMDLCQNRRGVFLGMEYLEETRALIKYNLPLNEVIYDFFDALKSRTRGYASYDYELIGY NESDLVKLDILINGTLVDAFSIIVHESTAYNKGRRICEKLTDVIPRHQFAVPIQAAIGNK IIARETIKALRKDVLAKCYGGDISRKRKLLEKQKEGKKRMRTVGEVDVPQEAFLTVLKYD EEN >gi|289656143|gb|ADCS01000047.1| GENE 7 7273 - 8472 768 399 aa, chain + ## HITS:1 COG:CAC1279 KEGG:ns NR:ns ## COG: CAC1279 COG0635 # Protein_GI_number: 15894561 # Func_class: H Coenzyme transport and metabolism # Function: Coproporphyrinogen III oxidase and related Fe-S oxidoreductases # Organism: Clostridium acetobutylicum # 24 397 4 373 374 244 38.0 3e-64 MMKKINKSDFISDFILNKNSTEDISLYIHVPFCESRCYYCDFYSSIINENNVNDYFENLY KELFLYKDFLKDKKIVSIFIGGGTPSSVNPKYIFKLMEKINLISTIEKSCEITIELNPNS VSSEKLKLYLNSKINRFSMGAQSFNDDILKKIGRIHKKEDIISACKLFGKYNIKNFNLDL MLALPSQKFEDIKESIKYIKLLDPAHISYYSLILETGTKLYDINQVNPLIFPDENQDRDM YHYIVHSLDDLGYKQYEISNFSKSEFESKHNLRYWKLKNYLGLGISSHSNINNLRFYNHN SFEKYYSIIKTSNLPVQDFEVLDNKDRINEFITMGLRLNSGINISSINKIFKIDFLNYYK NEISKNINLNLITIKNETIYLTELGRDLSNLVELDFIRL >gi|289656143|gb|ADCS01000047.1| GENE 8 8550 - 8813 261 87 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227486716|ref|ZP_03917032.1| 30S ribosomal protein S20 [Anaerococcus lactolyticus ATCC 51172] # 1 84 1 84 85 105 59 4e-22 MANIKSAIKRIDVIKRNNARNKSIKTEVKSAVKKFESALEAGNIDEARELLKLVDKKLKK AAHNNIVHKNAAARKISRLTLKFNKAN >gi|289656143|gb|ADCS01000047.1| GENE 9 8908 - 9909 1130 333 aa, chain - ## HITS:1 COG:CAC1273 KEGG:ns NR:ns ## COG: CAC1273 COG1466 # Protein_GI_number: 15894555 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, delta subunit # Organism: Clostridium acetobutylicum # 6 331 11 340 343 95 23.0 1e-19 MQYREIYKKDISGAFLFYGYERLLMDNAIEYVKKKYVSRGMETFNLSLYDGNNLTEDKLM SSCETLPVMNDKRVIFVKGANAFSESVTKEFYKFLDNIGEFLILVFLDEDNKIDKTKTFY KYFSKNNRAIEFPKLSGKDIFNFIEGYLVRKGFDISKSDISYLSLKSGYDSKNLDMTLYD LKNELDKMLVLSEVKKIDREVIDRSMTQNADSNIFNFLDALCNKNTEKSLMEFKKLHLLN EPIERIFSMIVRQVRLLIMYGDLKSNGYKDVQAMNYMGIKQYEYSKISKFSHNFDLKFLY QFYEKLLNIDEYFKTTQLSKYILLEMLIVEFTK >gi|289656143|gb|ADCS01000047.1| GENE 10 9875 - 12163 1488 762 aa, chain - ## HITS:1 COG:BS_comEC_2 KEGG:ns NR:ns ## COG: BS_comEC_2 COG2333 # Protein_GI_number: 16079611 # Func_class: R General function prediction only # Function: Predicted hydrolase (metallo-beta-lactamase superfamily) # Organism: Bacillus subtilis # 472 729 20 301 307 137 30.0 9e-32 MIYLLLSMILGIVLGDCLKINLIYLAILVMLSSTYFFYFKKFKTGISFLCIILFIISFLN VSMRTSNQLNESVNIKAEIVDDYINNESKYIASSSIFKKYLLYSKEKLSIGDIVIIYGSS AIPEGKMNFSDFNYKNYLKSKGIYEIIYSNSVKKVGESKSLKLRTYFKDYITDTVSKNLS DKNADIINSILLGNSNYIDKDIKDNFRNIGLSHMLAISGLHMGILMIIFEGILKLFGISK VLRRSIALLFSFVYLYLISMPIGAFRAYLMFGFMFMSFLFKYKYTSFNALILSAMITILI NPFSIYSPSFLLSYLSVLGIILFYKKFEILFQKNYFGKSLALTLSVNIMLFQVSIYLFRE FSVLGFISNVFLLPLYSFAIILSYILIIFKPLAFLIAPSINFILNVASFLAVKINDFSFL NLEFAEISIISVFILYSNFIIIKYKDIFINFYKFNISVLISLILIILINSAMFLYDYNNS FELNFIYVGQGDCAIGRTNNRYFMVDTGGSSNENYNPGKKYTLNYLKAKGINKIDKVFIS HFDEDHVDGLLDIIDEVKIKSLYISYIEDNKYLQKALSKGMNIYLVQKDDLIKMDDNTFF RIISDVDEYNSSNDKSMVMILNHRGFKILFTGDIEQTESNITETCNLLKVAHHGSKTSTS EEFLKTAKPRYAVISCGINNSYRHPHSEVINRLQENNVITKVTNEVGEINLNIKKNSIIF KGFKEKDGSFGIITLLTYIVIIAFVREYGEYIAIQGNIQKRY >gi|289656143|gb|ADCS01000047.1| GENE 11 12337 - 13185 925 282 aa, chain - ## HITS:1 COG:CAC1235 KEGG:ns NR:ns ## COG: CAC1235 COG0083 # Protein_GI_number: 15894518 # Func_class: E Amino acid transport and metabolism # Function: Homoserine kinase # Organism: Clostridium acetobutylicum # 3 281 4 296 296 186 41.0 3e-47 MIIKVPATTANLGPGYDSQGMALKLYNFFKIEPCSFLDEKLNDNLIYKSFRYFYDENNIE APSISIKVKSMIPMTRGLGSSATCIVAGLMAANELSNLKLDRKAILRYATNIEGHPDNVA PAIFGGHITSIVEDEVYFYKTHIDKNFKFNVLVPNFKMQTSRAREVVKKEVRLSDAVSNI ARATLISNALNSGDFNLLKGAAKDLLHEPYRKQLISDYDYIKSICSGNNAVLFISGAGPS LLVISERDNNDIDNALKNLSNTISKWRIHNVEVENDGAKIIF >gi|289656143|gb|ADCS01000047.1| GENE 12 13182 - 14636 1378 484 aa, chain - ## HITS:1 COG:CAC0999 KEGG:ns NR:ns ## COG: CAC0999 COG0498 # Protein_GI_number: 15894286 # Func_class: E Amino acid transport and metabolism # Function: Threonine synthase # Organism: Clostridium acetobutylicum # 3 483 6 494 496 418 50.0 1e-116 MKYISTRGNSKLNSSYEVILKGLSDDGGLYLPESFPEIEFSNEEIEKLDYIYFAKKIIGS IFDDFNKEELYSAIELAYSTFKGNIVPIKKLDNKYVIELYHGQTFAFKDFALSLLPRLIS IAIKHSGLDKKILVLTATSGDTGSAALYGFKNVENTDIAVFYPTDGISEIQERQMVTLDG KNTHAIAIRGNFDDAQSSLKKIFNDVQFREYLNMKGYELSSANSINIGRLIPQTVYYFYS YYYLVKNGYIKNGEKISVSVPTGNFGNILAAYLSKKMGLPINNLICASNKNNVLTEFINR GIYNINREFFVTNSPSMDILISSNLERFLYYELGEDSEEIKFLMESLMKNGKYFIDSRRL NNITAYYFDDDRTIDEIKKIYDEYNYLVDTHTAIGLLAAQDYEKFNKDEKILVAATASPF KFINSIAEALMMNSNDEISALNTLEEKFNISVPVEFKDLFAKDIKNKMVIEKDEIKDYIR RIIK >gi|289656143|gb|ADCS01000047.1| GENE 13 14639 - 15901 1487 420 aa, chain - ## HITS:1 COG:CAC3254 KEGG:ns NR:ns ## COG: CAC3254 COG0014 # Protein_GI_number: 15896499 # Func_class: E Amino acid transport and metabolism # Function: Gamma-glutamyl phosphate reductase # Organism: Clostridium acetobutylicum # 11 420 9 418 418 405 52.0 1e-112 MEQSLRQSLESIAIKSKNANRQLSKLSSKEKNSILSNIKKNIILKADEIIKANLIDMDNA KKIGLKEGVLDRLLLTENRVRAMAESVETLIDLKDPVGNIYDMRTLENGLIVGKKTVPIG VLAIIYEARPNVTLDASILAIKSSNSLILRGGKEAINSNISIVKIIRESISELGYDENMI CLIEDTTRESSVELMKLKGYIDLLIPRGSASLINSVIENSKVPVLETGVGNCHVYVDSSA KIEMALNIIENAKTSRIGVCNAMESLLVSEDISDNFYEGLQKIINQYNIIIHGCEKTMDK INNVIYATDEDYGKEYLDYEMSMKVVSGIDEAIDHIYRYSTNHSEVIITENYENAMKFLN EVDSACVYVNASSRFTDGGIFGFGAEIGISTQKLHARGPVGLNELTSSKYVILGSGQVRE >gi|289656143|gb|ADCS01000047.1| GENE 14 15873 - 16664 802 263 aa, chain - ## HITS:1 COG:CAC3253 KEGG:ns NR:ns ## COG: CAC3253 COG0263 # Protein_GI_number: 15896498 # Func_class: E Amino acid transport and metabolism # Function: Glutamate 5-kinase # Organism: Clostridium acetobutylicum # 3 263 6 266 267 221 47.0 1e-57 MREFSRKLKKVVVKIGSSSITHDNGIINLQKIDELAWELSNLKNHGIDVVLVSSGAIAAG AKRLNLAERPRDTVGKQAASAVGQVALMNTYNRAFNEFSYQAAQILLTKQIETDSVMREN SKNTFQKLLSMNVIPIVNENDTISTFEIEFGDNDTLSAVVARIVDADLLILLSDIDGLYN DDPKKNENAKFIYEVNEIDEKLKMMAKDSSSNVGTGGMTTKINAAKMCMEKGIDVVIANS NDIKNIRRVVGGEEIGTIFKAKS >gi|289656143|gb|ADCS01000047.1| GENE 15 16777 - 17622 510 281 aa, chain - ## HITS:1 COG:no KEGG:CPR_0879 NR:ns ## KEGG: CPR_0879 # Name: not_defined # Def: CAAX amino terminal protease family protein # Organism: C.perfringens_SM101 # Pathway: not_defined # 10 265 15 268 273 147 37.0 4e-34 MKSKKSLLQYIFIILFLVISYDLLLELFFAFYFYGKAALFGENFKIFNDGDFFLETLSCI IPLIVYSVWFFALKKNNDDKVSFEESVISKIVKCSIITFGLGGISSLWLEFVDRYLYKIS IFKNSYDSFNDTWSGVVEEPYIFVFLSVVILGPIVEELLFRGLIYNYSDKIKSKLFPVIV SALLFGIWHRELVQSVYTISLGFGIALVYKDMKSLIWPIYVHILNNFISSFPDFIYNDAF LNAIDYLSFIMIIPTFYFMYKMIKRMYTQTSIQIESSDTLE >gi|289656143|gb|ADCS01000047.1| GENE 16 17995 - 18156 166 53 aa, chain - ## HITS:1 COG:no KEGG:SDEG_1339 NR:ns ## KEGG: SDEG_1339 # Name: not_defined # Def: hypothetical protein # Organism: S.dysgalactiae # Pathway: not_defined # 2 53 3 54 54 62 90.0 4e-09 MEEKREIKKLQYKQLIMDIGKTKHTVNLHFKQGTGETYKDKILKLIKRETEKI >gi|289656143|gb|ADCS01000047.1| GENE 17 18256 - 18705 477 149 aa, chain - ## HITS:1 COG:lin2984 KEGG:ns NR:ns ## COG: lin2984 COG4405 # Protein_GI_number: 16802042 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 3 149 6 152 153 113 41.0 1e-25 MDDKVKEFWIKFCNEKKLPIDIKYQAWSFGNTKEMADKLAELVNCNIKTATTSAFELYEM GDDIPQVGEYNIILNGSKEPVCITQTKVVYMIPYNLITPEHAWHEGEGDRSYQYWREVHD SYFFEEYKSVGKNFYEQAPMICEVFEKIY >gi|289656143|gb|ADCS01000047.1| GENE 18 18799 - 19497 421 232 aa, chain - ## HITS:1 COG:no KEGG:DSY0910 NR:ns ## KEGG: DSY0910 # Name: not_defined # Def: hypothetical protein # Organism: D.hafniense # Pathway: not_defined # 1 230 12 241 245 308 62.0 7e-83 MNQYLKETKMLDFSNPSIQKLIEMKRWEEENKFDCLKAIYNFVRDDIVFGYNVDDSIPAS KVLDDGYGQCNTKGTLFMALLRACKIPCRIHGFTIDKQLQKGAMSGFVYKNAPQNIFHSW VEVYFEDKWYELEAFILDQKYLSKLQKQFANCTGSFCGYGVAVKDFQHPVIDFDRNNTYI QSEGITKDFGVYDSPDELMKNHHQELSGIKTFVYRHLGRHLMNWNVKNIRKS >gi|289656143|gb|ADCS01000047.1| GENE 19 19778 - 19915 113 45 aa, chain - ## HITS:1 COG:CAC3492 KEGG:ns NR:ns ## COG: CAC3492 COG1533 # Protein_GI_number: 15896729 # Func_class: L Replication, recombination and repair # Function: DNA repair photolyase # Organism: Clostridium acetobutylicum # 1 45 1 45 290 65 66.0 2e-11 MHFKEVKGILSSKNGMNLFRGCTNGCIYCDSRSGYYHMKHKFEDV >gi|289656143|gb|ADCS01000047.1| GENE 20 19935 - 20477 569 180 aa, chain - ## HITS:1 COG:FN1248 KEGG:ns NR:ns ## COG: FN1248 COG4283 # Protein_GI_number: 19704583 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Fusobacterium nucleatum # 1 180 25 204 204 280 84.0 2e-75 MPRPTTKNDLMAAAKENYEKLNLFISKMTEEELNTPFDFSKDEKKKEAHWKRDKNLRDVL IHLYEWHQLILNWVHSNQKGEEKPFLPAPYNWKTYGDMNVEFWKKHQNTSLEDAAEMFHK SHSDVLALAETFTDKELFSKGVYKWTGGSTLGSYFVSATSSHYDWAMKKLKAHKKNCKLK >gi|289656143|gb|ADCS01000047.1| GENE 21 20484 - 20747 407 87 aa, chain - ## HITS:1 COG:no KEGG:SZO_12740 NR:ns ## KEGG: SZO_12740 # Name: not_defined # Def: hypothetical protein # Organism: S.equi_zooepidemicus # Pathway: not_defined # 1 87 1 87 87 160 100.0 9e-39 MDTKYCQCCGMPMGEGTELYGTNSDGSVNEDYCKYCFEKGEFTFKGTMEEMIEICVPHVV EANKDMNEDSARKMMMEFFPTLKRWKE >gi|289656143|gb|ADCS01000047.1| GENE 22 20809 - 21753 878 314 aa, chain - ## HITS:1 COG:FN1249 KEGG:ns NR:ns ## COG: FN1249 COG2378 # Protein_GI_number: 19704584 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Fusobacterium nucleatum # 1 314 1 314 314 469 81.0 1e-132 MSSYYGIINIGDVKTMKDNRLFRILYYILEKGKVTASDLADKFEVSVRTIYRDIDSISSA GIPIYATQGKGGGIEIAEDFVLNKSLLSENEKQQIMSALQGLDNTAIQHENELLTKLSAL FKMKNTSWIEVDFNNWQNNKMYEKIFNSIKSAILSKSIISFTYFSSNKKETNRIVKPVRL LFKSQDWYLYALCLLRNDFRYFKLSRIKNLEIHTEKFDDNFEDVILKKETPHENTVNIKV KFDRKVAFRVYDELNGEITEDNDGNLYTEIEIPNDYNLYNYIFSFGDEAEVLEPEEVRMQ IKKMINKMAEKYII >gi|289656143|gb|ADCS01000047.1| GENE 23 22029 - 23579 1727 516 aa, chain - ## HITS:1 COG:BH1457 KEGG:ns NR:ns ## COG: BH1457 COG1292 # Protein_GI_number: 15614020 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Choline-glycine betaine transporter # Organism: Bacillus halodurans # 15 516 16 505 566 230 33.0 4e-60 MSEKKIDKKEIRWPVFIPAFALTLLAAIIGIVNNEALASMSNKFFGWSLESFGWLYQIVS VAVLIVTLVIMFSKVGSIRIGGKDAMPKYSFWTWFAMTLTGGVATGIVSWGVNEPLIYLG NVYGELDALGIKPGTAEAARFAMGRSFYNWTFIPYAMYALAGIVVAYVYFNKKKQLNVTS TLEPVFGEKIRKGFIANIIDTLSMLAIILGLSSGLTMCIVLITTGLNSSYGFENSFGLFL AVGVIIVALFTLSSYVGLDNGLKKLAGINAYFYYGLLIFLFVAGPTLFILRNTTAGLAEW FNNFWLWGLDPIDIGGAPLTRSWTLFDWSVWIAYAPVTGIFLGQISYGRTIRECLIVNLI LPSVFGIIWFGVWGNTAINMQLTGQMDLVATIQNSNAVTALFEFIKNMPLSVILIPINLF VILISFVTAADATTNNVASMCIKNIPIGSEAPRYLKVVWGVTIGIIAIIMAAFGGREQGV EGVKALAAAGGFVVLFIFILQIVSAIKMFFIDKIEE >gi|289656143|gb|ADCS01000047.1| GENE 24 23580 - 23807 314 75 aa, chain - ## HITS:1 COG:no KEGG:glr3066 NR:ns ## KEGG: glr3066 # Name: not_defined # Def: histidine ammonia-lyase # Organism: G.violaceus # Pathway: Histidine metabolism [PATH:gvi00340]; Nitrogen metabolism [PATH:gvi00910]; Metabolic pathways [PATH:gvi01100] # 3 73 437 507 514 68 49.0 8e-11 MLDNIRYIIGIEAMHAAQAIDLRGNKKLGKTTSLAYKVIRDAVPFYDKDRNLSRDIEKVY EVIKSKKLLEILEVE Prediction of potential genes in microbial genomes Time: Fri May 27 07:44:14 2011 Seq name: gi|289656142|gb|ADCS01000048.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.48, whole genome shotgun sequence Length of sequence - 12311 bp Number of predicted genes - 10, with homology - 10 Number of transcription units - 5, operones - 3 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 2 - 1427 1661 ## COG2986 Histidine ammonia-lyase 2 1 Op 2 12/0.000 - CDS 1429 - 3690 2502 ## COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs 3 1 Op 3 15/0.000 - CDS 3687 - 4520 1019 ## COG1319 Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs 4 1 Op 4 . - CDS 4520 - 4981 455 ## COG2080 Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs - Prom 5001 - 5060 2.1 5 2 Tu 1 . + CDS 5395 - 7677 2293 ## COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases - Term 7420 - 7472 3.0 6 3 Tu 1 . - CDS 7686 - 8522 815 ## Gbem_2523 DSBA oxidoreductase - Prom 8551 - 8610 15.7 + Prom 8611 - 8670 13.2 7 4 Op 1 12/0.000 + CDS 8694 - 10817 1889 ## COG1328 Oxygen-sensitive ribonucleoside-triphosphate reductase 8 4 Op 2 . + CDS 10817 - 11311 512 ## COG0602 Organic radical activating enzymes + Term 11312 - 11340 -1.0 - Term 11494 - 11539 7.8 9 5 Op 1 . - CDS 11546 - 11926 499 ## COG0251 Putative translation initiation inhibitor, yjgF family 10 5 Op 2 . - CDS 11926 - 12276 412 ## COG0799 Uncharacterized homolog of plant Iojap protein Predicted protein(s) >gi|289656142|gb|ADCS01000048.1| GENE 1 2 - 1427 1661 475 aa, chain - ## HITS:1 COG:SMa0306 KEGG:ns NR:ns ## COG: SMa0306 COG2986 # Protein_GI_number: 16262618 # Func_class: E Amino acid transport and metabolism # Function: Histidine ammonia-lyase # Organism: Sinorhizobium meliloti # 1 475 22 524 546 296 36.0 8e-80 MEKLILTGAPLTLEDVYSVAYSNRQVEISDDAEKRVRDARQILFDMAAEGKPVYGLNRGV GWNKDKEFDEDFFAAYNKNLLNSHCLGVKPYHPDEHVRAILLLRLNKALTGHTGISAELL HHYRDFLNYGIHPRIPMRSSIGEADITTLSHIGLAFIGEEDVTFNGEVMNSTDAMNKVGL KPAKLGPKDGLSIVSCNAQGEAMTAILLKEIEDIVKMSTIIFCMSLEGLNGVMEQLREDV NEVRAIKGQEKVAKMCREYLEGSYLHEYDPERALQDPLSFRCAHSVNGTMYDVMEYVKEQ LGITMNTTDDNPCIIIDEKSSFVSANFEITSLAIGVEMLAVALSHLSKSSCYRMIKLADP AFTKLNRFLTPKEVETIAFGTIQKTYTMLDTQNRGLANPSSMDFYSLAGTIEDHASNLPL ACYKIFQMLDNIRYIIGIEAMHAAQAIDLRGNKKLGKTTSLAYKVIRDAVPFYDK >gi|289656142|gb|ADCS01000048.1| GENE 2 1429 - 3690 2502 753 aa, chain - ## HITS:1 COG:SMb20132 KEGG:ns NR:ns ## COG: SMb20132 COG1529 # Protein_GI_number: 16263880 # Func_class: C Energy production and conversion # Function: Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs # Organism: Sinorhizobium meliloti # 4 752 16 769 772 372 32.0 1e-102 MSQYKYIGKSLIREDSLSRVTGKAKFIGDIKKYDMLYAKLVLSEKPHANISFDCSEAMKV EGIHSILTHSDLPQKMYNSMEWFSGVSGYKDECVLNERARYVGDRIAIVIGETRIAVEEA IMKLKINYEELPAVIGIDEAKKDEIVIKRDSNLAYEKHLACGDFEKVCKEADYIIEDRGS TPRTHHLAIENHVALGEIDEFGNLVVSSPSQIVFAIQMHLSNVLGIPYNKVRVIKSLMGG SFGGKQQPLLEIIVGAVAWKLKRPVLLYMDREQSIKGTFTRNYMRVSVKTAINKDGTILG RKISTEVDGGAYDTNNISITNAFAKKLFRLYKIKNQEFEGRAYYTNAIPGGACRAYGGPQ AHAVSEINITNAALKIGMDPCEFRLKNLIDPYDDDPVGGPNLGKAAIKECIIKGMEAFDW KEKFNHIREKNTDRYSYGVGVACASHGNGYLGAFPDFTNIEMILSADGSVLIKNAIHEQG CGTVASLVQVAAEELDLDPKMISIPEADTFISPYDAAGTQASRVSFVSGGAIIEAAEKLK EKLFDTLEKVKKLNKNDLYIDDGYVLVRNSDEKYSYGEIASLREKFLFDPTSVYVHHVPK GNPAALAACFAEVKVDKKTGFVEIVKLLAVHDIGKPINPMLVEGQIHGGCQFVLGMAISE EVVIDKDGYVKNASLSKYHTLNAQDMPNVEVILVESDDETAPYGLKSVGELSAVAPAPAV LNAINHALGTNITNYPANPENIIKSIEKLREEE >gi|289656142|gb|ADCS01000048.1| GENE 3 3687 - 4520 1019 277 aa, chain - ## HITS:1 COG:ygeT KEGG:ns NR:ns ## COG: ygeT COG1319 # Protein_GI_number: 16130769 # Func_class: C Energy production and conversion # Function: Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs # Organism: Escherichia coli K12 # 13 275 18 282 292 110 29.0 3e-24 MFYSPKNEIELKNVLLNAPENTFFIAGGTDLIIHLKKNNITEYSIVDLTKISDWKNISED EEYIYIGSVVTMTELCESELIKNKLTALYNAAYNLGSEQIRNKATIGGNIANASQSADTM LTMFSYGADIKIYNPENGFRIVPIYDVVIGREKTSLTKNEVICEIIIKKKNRISAFRKVG SRIAVTISKISCAMDLEMSEDVILNASVYLGAVGVKPVEAKLIEEEILNKRLNDIDITKI QELAFREIELAIPTRSSKYYKRIAIEGLVEDLLGDLK >gi|289656142|gb|ADCS01000048.1| GENE 4 4520 - 4981 455 153 aa, chain - ## HITS:1 COG:APE2213 KEGG:ns NR:ns ## COG: APE2213 COG2080 # Protein_GI_number: 14601917 # Func_class: C Energy production and conversion # Function: Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs # Organism: Aeropyrum pernix # 3 144 11 152 163 153 49.0 1e-37 MIIKTKVNGIEYETDVSEKLRLIDFLRDDLKLTGTKEGCSEGECGACTVIIDKKAVASCL VLAGQVDGCEILTVEGLQQNGELDILQKKFIEHGAVQCGFCSPGFLMSAKALMMNNENPT LNDIKRAIEGNICRCTGYKKIIEAIDSAIKEGK >gi|289656142|gb|ADCS01000048.1| GENE 5 5395 - 7677 2293 760 aa, chain + ## HITS:1 COG:MA3787 KEGG:ns NR:ns ## COG: MA3787 COG0493 # Protein_GI_number: 20092583 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: NADPH-dependent glutamate synthase beta chain and related oxidoreductases # Organism: Methanosarcina acetivorans str.C2A # 295 759 2 469 469 517 57.0 1e-146 MYKILNKECLAPNIYLMDVYAPRIAASAKPGQFIIVIADKYSERIPLTICDYNKEKGTVQ IVVQVIGESTKKICNYNINESFADFVGPLGHPSEFIEDNLNTLKSRKYLFVAGGVGTAPV YPQVKWLFEHGIDVDVIIGAKSKEFVILEDKLKAVSKNLYITTDDGSYGFKGLVTNKIVD LIENENKKYDICVSIGPMIMMKFVCQTTKNYNLKTIVSLNPIMVDGTGMCGACRVNIGGV NKFACVDGPEFDGHLVDFDSAIKRQSQYKNNPEKLLKDNKEHTCSLEIAVEKQHREIENE KADRFKRTPISEQPANIRNKNFEEVCLGYTEEEAVIEAKRCLNCKNPLCVGGCPVSINIP EFIKAIANSEFGKSAEILSRYTALPAVCGRVCPQETQCEQRCILTKRGDAVAIGKLERFA ADYARKNNIKLNEKPEPNGHKVAIVGAGPAGLTCAGELAKLGYDVTVFEALHQAGGVLVY GIPEFRLPDEVVNHEVKNLLNLGVKIENDIIIGRTITIDQILDQGFEAVFIGSGAGLPSF MNIPGENLNGVYSANEFLTRNNLMRSFEKEYDTPINVGNKVAVIGGGNVAMDAARVAKRL GADVSILYRRTEAELPARVEEVHHAKEEGIKFEMLTAPIEIIGSDDGWVKSLKCVKNELG EPDDSGRRRPIQIPNSEYEEEFQTIIMALGTSPNPLISQTTKNLDTNRKGCIVADDFGQT SRPEIFAGGDAVTGAATVILAMGAGKTAAEKIDEYIKNKQ >gi|289656142|gb|ADCS01000048.1| GENE 6 7686 - 8522 815 278 aa, chain - ## HITS:1 COG:no KEGG:Gbem_2523 NR:ns ## KEGG: Gbem_2523 # Name: not_defined # Def: DSBA oxidoreductase # Organism: G.bemidjiensis # Pathway: not_defined # 1 272 5 278 300 139 30.0 2e-31 MKLTIFSDAVCTWSYGEEKVLRAIDYIYCGKIEMDNIMAGMISDYHDILPMNMKDNDSDE MANKILLQIWQTGSNIHGMPIMIKAPNLLSRKNPSTNIIDCAFIAARITEFSLSNKFLRK LREATMLDGLNTMDENICADIAQEIGIDRVKFIENFRDFSKEEFLNDRIATFDRRMVTFP NFMYVDEKKREHVIRGYKTKNQLIEFIDKFSNLKKRDIIADEKHILDFIKQYKRVFRVEL KETFDISDIDLDEILEKLERQEAIIKSEVGNGIEYKEK >gi|289656142|gb|ADCS01000048.1| GENE 7 8694 - 10817 1889 707 aa, chain + ## HITS:1 COG:VCA0511 KEGG:ns NR:ns ## COG: VCA0511 COG1328 # Protein_GI_number: 15601271 # Func_class: F Nucleotide transport and metabolism # Function: Oxygen-sensitive ribonucleoside-triphosphate reductase # Organism: Vibrio cholerae # 4 707 5 706 706 500 39.0 1e-141 MTEVIKRNGVKVPFDANKIEIAIEKAMHSSNGIFIEDQAKTIAKEIENYANTLEDAISIY DIEEQVYYKLIQYNNPATARSYESYKSVQSFKREQNTTDKEILGLLNQTNFNVMDENSNK NAIIASTQRDLIAGEVSKDIAKRKMIPADLVEAHDSGAIHIHDMDYIIQPIFNCCLVNMK DMLDKGTVVNGKMIETPKSFQVACNVMTQIIAQIASNQYGGQSINISCLGKYLRKSYEKN LNLAIETLGDVELAEKMANKMTQKDLESGIQTIQYQINTLMTSNGQAPFVTLFMHLEDND PYIDEVAQIIEEILKQRIKGIKNDAGVYVTPAFPKLIYVLDENNIRRDSKYYYLTSLSIR CTAKRMYPDYISAKKMKNNYEGNVFSPMGCRAFLPAWKNEKGQYQFEGRFNMGACSINLP QVAILANGDEKKFFEILEKRLELVKRIGVIRYEHLKNVTSDSSPIHWQHGAIARLGKHES IAPLLLNGYSTVSLGYIGIYEATILTKGVSHTDPVGYEFAMKIMDHLNDAVKRWTEEIGI KFTLYATPAESLTHRFCSIDKNRFGVIENVTDKGYYTNSFHVDVREDISAFEKFTFESKF QDRSTGGCISYVEIPNMGHNLEALETLVKFIYDNIQYAEFNTKSDYCAECGFDGEIKLND ENKWECPQCGNKDKATLTVVRRTCGYLGENFWNEGRTKEINSRVLHI >gi|289656142|gb|ADCS01000048.1| GENE 8 10817 - 11311 512 164 aa, chain + ## HITS:1 COG:FN0312 KEGG:ns NR:ns ## COG: FN0312 COG0602 # Protein_GI_number: 19703657 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Organic radical activating enzymes # Organism: Fusobacterium nucleatum # 1 159 1 164 168 153 47.0 2e-37 MKYGQIRQFDIANGPGIRTTFFVTGCTHNCPDCFNKEYQDFSFGNVWTEKETQMVIDYLK NESVSGLTILGGEPFQNTKDLIPIVKKIKANSEKSIWIYSGYTYEQLISDKLKKELLSLC DVLIDGLFIKELKDLNLHFRGSSNQRIIDIQKSLELNQVNLINI >gi|289656142|gb|ADCS01000048.1| GENE 9 11546 - 11926 499 126 aa, chain - ## HITS:1 COG:BS_yabJ KEGG:ns NR:ns ## COG: BS_yabJ COG0251 # Protein_GI_number: 16077116 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation initiation inhibitor, yjgF family # Organism: Bacillus subtilis # 4 123 3 121 125 144 56.0 5e-35 MSVRLTHTEKAPAAVGPYSQGAVVGNLLFTSGQIPLIPETGELVSDDIQKAARQSLENVK AIVENEGSNFNKAIKVNIFLSDMNNFAAVNEVYSEYFTDHKPARSCVEVARLPKDALIEI EAIVEL >gi|289656142|gb|ADCS01000048.1| GENE 10 11926 - 12276 412 116 aa, chain - ## HITS:1 COG:lin1521 KEGG:ns NR:ns ## COG: lin1521 COG0799 # Protein_GI_number: 16800589 # Func_class: S Function unknown # Function: Uncharacterized homolog of plant Iojap protein # Organism: Listeria innocua # 6 105 7 106 118 101 51.0 4e-22 MENKKLDIIVKSCEDKKGTDIKVLDIKGLSSIADYFVIVSGNSSNQVNALADEIEDKMSE EGYELSNKSGKNSMRWILLDYDDIIVHVFHKDEREYYNIERLWSDEENFRVKEEED Prediction of potential genes in microbial genomes Time: Fri May 27 07:44:20 2011 Seq name: gi|289656141|gb|ADCS01000049.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.49, whole genome shotgun sequence Length of sequence - 2808 bp Number of predicted genes - 6, with homology - 6 Number of transcription units - 1, operones - 1 average op.length - 6.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 3/0.000 - CDS 3 - 234 246 ## COG0799 Uncharacterized homolog of plant Iojap protein 2 1 Op 2 3/0.000 - CDS 244 - 1134 801 ## COG1316 Transcriptional regulator 3 1 Op 3 9/0.000 - CDS 1118 - 1717 484 ## COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism 4 1 Op 4 7/0.000 - CDS 1692 - 2285 552 ## COG1057 Nicotinic acid mononucleotide adenylyltransferase 5 1 Op 5 . - CDS 2285 - 2572 241 ## PROTEIN SUPPORTED gi|212638657|ref|YP_002315177.1| Predicted RNA-binding protein containing KH domain, possibly ribosomal protein 6 1 Op 6 . - CDS 2581 - 2808 201 ## Clos_1750 GTP-binding protein Obg/CgtA Predicted protein(s) >gi|289656141|gb|ADCS01000049.1| GENE 1 3 - 234 246 77 aa, chain - ## HITS:1 COG:BS_yqeL KEGG:ns NR:ns ## COG: BS_yqeL COG0799 # Protein_GI_number: 16079616 # Func_class: S Function unknown # Function: Uncharacterized homolog of plant Iojap protein # Organism: Bacillus subtilis # 6 76 7 77 118 63 43.0 1e-10 MENKKLDIIVKSCEDKKGTDIKVLDIKGLSSIADYFVIVSGNSSNQVNALADEIEDKMSE EGYELSNKSGKNSMRWI >gi|289656141|gb|ADCS01000049.1| GENE 2 244 - 1134 801 296 aa, chain - ## HITS:1 COG:DR1488 KEGG:ns NR:ns ## COG: DR1488 COG1316 # Protein_GI_number: 15806501 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Deinococcus radiodurans # 9 290 8 292 389 137 34.0 3e-32 MKQFFKSFLLTLILIVFLFLGSTLYFILKNHVEKPGDFFKEIISSNDNITFLLLGVDSLN IDKAQNTRSDTIMLVNVNLESGKVNLISIPRDTYANIEGHGKQKINHSYNYGGADLTLST VNNLLGTNIENYIAVDYKFVKDIVNIIGGVNVDVPMDMDYEDLWADPPLKIHLKQGMQKL KGDEAIQFLRFRKGYKNQDLGRVQAQQQFVSSFIQKAKSPATFVKFPIFLRSYDKYTKSN IPFSKIVKIGLNVRKYSAENIETMTVPGNAGYKNKISYFFVDKNEMDAILVNLGLK >gi|289656141|gb|ADCS01000049.1| GENE 3 1118 - 1717 484 199 aa, chain - ## HITS:1 COG:CAC1263 KEGG:ns NR:ns ## COG: CAC1263 COG1713 # Protein_GI_number: 15894545 # Func_class: H Coenzyme transport and metabolism # Function: Predicted HD superfamily hydrolase involved in NAD metabolism # Organism: Clostridium acetobutylicum # 15 191 9 185 189 151 45.0 1e-36 MIINFIEADMQENKDKIIALIGQKRYEHSLRVMDVAIELSKIYGEDKRKAAIAGYYHDCA KIKNVDLLHSKCIEYGLKLTHDMKMNPQIIHGHLGALIAKADYGIEDEDILNSIRWHTTG RIGMSLLEKIVFIADYIEPGRNFPEVELARTLARTNINKAVYFSLNNTIIHLCNSNSYIA TDTLLARNYILEIENETIF >gi|289656141|gb|ADCS01000049.1| GENE 4 1692 - 2285 552 197 aa, chain - ## HITS:1 COG:Cgl2301 KEGG:ns NR:ns ## COG: Cgl2301 COG1057 # Protein_GI_number: 19553551 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinic acid mononucleotide adenylyltransferase # Organism: Corynebacterium glutamicum # 3 196 10 202 218 145 38.0 5e-35 MKKYGIMGGTFNPIHFGHLMISEYIRIEMELDKIIFIPTGNPPHKKTIDAKFRFEMTSIA IEDNENFMISDIETNKIGNSYSIDTVKQLKNKLDGKFYFIIGSDTLFQLRTWKKFDELSE EVEFICAVRPNYTASEDLRKELKELEKYNATVHVVETPLYEISSTDLRNRFKLNKSVKYL VPDNVIIYINDNKLYRG >gi|289656141|gb|ADCS01000049.1| GENE 5 2285 - 2572 241 95 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|212638657|ref|YP_002315177.1| Predicted RNA-binding protein containing KH domain, possibly ribosomal protein [Anoxybacillus flavithermus WK1] # 1 95 1 95 97 97 48 1e-20 MITGRQRSYLKSLANTLNPLLQVGKNGVTENLIKQIDELLEYHELVKITVLKNSPVYARE IVEEILEQTGAEFVQQIGNKLTIYRESKENKKIEL >gi|289656141|gb|ADCS01000049.1| GENE 6 2581 - 2808 201 75 aa, chain - ## HITS:1 COG:no KEGG:Clos_1750 NR:ns ## KEGG: Clos_1750 # Name: not_defined # Def: GTP-binding protein Obg/CgtA # Organism: A.oremlandii # Pathway: not_defined # 11 74 366 429 430 71 56.0 8e-12 EREEGINVYIEDNKYIVDGPYIEKLLHSTNFEDIYSLKYFQENLRKNNVVDKLKSLGISE GDSVFILGYEFEFFE Prediction of potential genes in microbial genomes Time: Fri May 27 07:44:30 2011 Seq name: gi|289656140|gb|ADCS01000050.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.50, whole genome shotgun sequence Length of sequence - 19546 bp Number of predicted genes - 22, with homology - 22 Number of transcription units - 3, operones - 2 average op.length - 10.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 14/0.000 - CDS 58 - 1323 1331 ## COG0536 Predicted GTPase - Prom 1359 - 1418 8.8 - Term 1406 - 1449 5.1 2 1 Op 2 . - CDS 1450 - 1740 353 ## PROTEIN SUPPORTED gi|114567129|ref|YP_754283.1| 50S ribosomal protein L27 3 1 Op 3 . - CDS 1740 - 2069 245 ## gi|299144208|ref|ZP_07037288.1| conserved hypothetical protein 4 1 Op 4 . - CDS 2069 - 2374 359 ## PROTEIN SUPPORTED gi|227902335|ref|ZP_04020140.1| ribosomal protein L21 - Prom 2445 - 2504 8.9 - Term 2451 - 2495 -0.5 5 2 Tu 1 . - CDS 2506 - 3756 791 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 - Prom 3790 - 3849 10.1 - Term 3773 - 3812 3.6 6 3 Op 1 3/0.000 - CDS 3898 - 4521 818 ## COG0572 Uridine kinase 7 3 Op 2 4/0.000 - CDS 4518 - 5747 1424 ## COG0826 Collagenase and related proteases 8 3 Op 3 . - CDS 5749 - 6393 577 ## COG4122 Predicted O-methyltransferase - Term 6398 - 6427 1.4 9 3 Op 4 1/0.000 - CDS 6430 - 8094 1873 ## COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily 10 3 Op 5 . - CDS 8095 - 8544 474 ## COG0735 Fe2+/Zn2+ uptake regulation proteins 11 3 Op 6 . - CDS 8553 - 8798 341 ## gi|299144216|ref|ZP_07037296.1| conserved hypothetical protein 12 3 Op 7 6/0.000 - CDS 8809 - 9219 576 ## COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) - Prom 9248 - 9307 3.3 - Term 9266 - 9302 5.1 13 3 Op 8 4/0.000 - CDS 9310 - 9564 405 ## COG4472 Uncharacterized protein conserved in bacteria 14 3 Op 9 3/0.000 - CDS 9617 - 12241 2732 ## COG0013 Alanyl-tRNA synthetase - Prom 12268 - 12327 1.7 - Term 12252 - 12285 2.1 15 3 Op 10 1/0.000 - CDS 12330 - 13556 1201 ## COG0628 Predicted permease 16 3 Op 11 13/0.000 - CDS 13566 - 14693 1074 ## COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes 17 3 Op 12 . - CDS 14696 - 15094 350 ## COG1959 Predicted transcriptional regulator 18 3 Op 13 19/0.000 - CDS 15106 - 15555 537 ## COG0822 NifU homolog involved in Fe-S cluster formation 19 3 Op 14 24/0.000 - CDS 15545 - 16780 1379 ## COG0520 Selenocysteine lyase 20 3 Op 15 12/0.000 - CDS 16781 - 17827 1023 ## COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component 21 3 Op 16 41/0.000 - CDS 17837 - 19255 1630 ## COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component 22 3 Op 17 . - CDS 19257 - 19544 241 ## COG0396 ABC-type transport system involved in Fe-S cluster assembly, ATPase component Predicted protein(s) >gi|289656140|gb|ADCS01000050.1| GENE 1 58 - 1323 1331 421 aa, chain - ## HITS:1 COG:CAC1260 KEGG:ns NR:ns ## COG: CAC1260 COG0536 # Protein_GI_number: 15894542 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Clostridium acetobutylicum # 1 421 1 424 424 396 51.0 1e-110 MFIDIADIKLKAGNGGDGAVAWRREKYEPAGGPAGGDGGNGGNIILKTDSGLHTLMDFRY KREYKAPNGENGMSKKKFGKNGEDIILKVPVGTLVKDKKTGGVIVDLKEVNQEYVIAKGG RGGRGNAKFTTSTRQAPAFAQAGSKGEEKAITLELKLLADVGLVGFPNVGKSTLLSIVSS AKPKIANYHFTTIKPNLGVVSLGPEMSFVIADIPGLIEGASEGLGLGDEFLKHVERTKIL IHVLDASGSEGRDPIEDFYKINEELKNYNEKLSDKMQIIFANKMDVFPAEENLEKIKKEF GDKYMIFYGSAATTENVDELMKYTFTELQKCEDEYETYDIQYVEEEKREEGINVYIEDNK YIVDGPYIEKLLHSTNFEDIYSLKYFQENLRKNNVVDKLKSLGISEGDSVFILGYEFEFF E >gi|289656140|gb|ADCS01000050.1| GENE 2 1450 - 1740 353 96 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|114567129|ref|YP_754283.1| 50S ribosomal protein L27 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] # 1 94 1 93 97 140 77 7e-33 MIRFNLQLFSSKKGAGSSKNGRDSQAKRLGVKRSDGQYVIAGNILVRQRGTRIHPGENVM RGGDDTLFATADGRVKFETKGRGNKKIVSVYTEELA >gi|289656140|gb|ADCS01000050.1| GENE 3 1740 - 2069 245 109 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|299144208|ref|ZP_07037288.1| ## NR: gi|299144208|ref|ZP_07037288.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 109 1 109 109 197 100.0 1e-49 MINIKIFKRNANYIGFESFGHAEYSDGDDIVCAGVSTLTQTMYFHLVENLNLDEKFFDVE QRDGYLKLILKNNDKDTNIQVSFMYMIKGLEILEAQYSKHIKLEMMEVQ >gi|289656140|gb|ADCS01000050.1| GENE 4 2069 - 2374 359 101 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227902335|ref|ZP_04020140.1| ribosomal protein L21 [Finegoldia magna ATCC 53516] # 1 100 1 100 102 142 64 1e-33 MYAVIETGGKQYTVKAGDKVKIEKLNANEGDKVTFDKVLLVGGEDLKVGKPYVEGSKVEA KVLVQAKDKKIIVYKYKSKKNERKKRGHRQPYTLVEIENII >gi|289656140|gb|ADCS01000050.1| GENE 5 2506 - 3756 791 416 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 12 416 8 432 447 309 41 1e-83 MEKFFFGNGSTNKFLINLKKIILALQHLIAMFGATVLVPLLTGFNVNTTLFCAGIGTLIF HFCTKKKVPVFLGSSFAFIPVIQSVYNNYGSLSYAQGGIAVAGLLYVILSFVIGKVGANK IIKYFPAQVVGPMIIVIGFNLIPTAISMASSNYLVSGVTLVFCLTLSFFTEGFLKQLSII ISVIIGYILSLNIGLVDMSAVRDAAILSLPQFSAPKFDIPAIIVIAPVVLAVFMEHIGDI TTNSAVVGENFLEDPGLNRTLLGDGLATMVAGFLGGPANTTYGENTGVLAITKNYDPSIL RITAIFAIMLGCVGKVGGLLQTIPQAVMGGISVVLFSMIALIGIKTIKNSKINFNLKNII IMLSIIIIGLGSHVGINIAIKITEEVSLSGLSLAALVGVILNIILSRFEDKINRDK >gi|289656140|gb|ADCS01000050.1| GENE 6 3898 - 4521 818 207 aa, chain - ## HITS:1 COG:BH1275 KEGG:ns NR:ns ## COG: BH1275 COG0572 # Protein_GI_number: 15613838 # Func_class: F Nucleotide transport and metabolism # Function: Uridine kinase # Organism: Bacillus halodurans # 2 207 3 208 211 261 61.0 6e-70 MRTPIIIGIAGGSGSGKSTVTNELKAMLDDNKVVIIEQDSYYKDQSALPFEQRVKTNYDH PFAFDNDLLIEHLKKFKNNESIEKPIYDFEVHNRKEETKIIEPKEVIILEGILILSEKEI RDLLDIKIFVDTDSDVRIIRRILRDIKERGRSLESVILQYMSTVRPANMQFVEPSKKYAD IIIPEGGYNKVAIDLIYSKIKSFLDEK >gi|289656140|gb|ADCS01000050.1| GENE 7 4518 - 5747 1424 409 aa, chain - ## HITS:1 COG:CAC1687 KEGG:ns NR:ns ## COG: CAC1687 COG0826 # Protein_GI_number: 15894964 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Collagenase and related proteases # Organism: Clostridium acetobutylicum # 1 403 1 401 406 446 52.0 1e-125 MNKIELLAPAGDLNKLKTAIDYGADAVYLGGESFGLRKASKNFSMEDIREGVIYAHERGK KVHVTLNIIPHDKDIDGVEEYVKQLYDMGVDALIVADPGMFLKVRNAVSDMDIHISTQGS VTNSSTVAFWKQMGAKRVVLARELSIDEIKNIVKESNGEIEIETFAHGAMCMSYSGRCLL SNYMTGRDANMGDCSQACRYKYYLVEEKRPGEYFPIEEHDEGSFIMNSKDLCMIEHIDDL IESGVVSLKIEGRVKSEYYLATVIRSYRMAIDSYYENPEKYVFDKSLLDEIKKVSHRDFT TGFFYGKANEDSQVYKTNSYIRGYDFVGIVLDYDKNSKIATIEQRNRIFKGEEIEIFGPS VKFFKQKIDYMTDENDIPIEVANKAKQIFKIKVDRDVKKDFMLRRKNEI >gi|289656140|gb|ADCS01000050.1| GENE 8 5749 - 6393 577 214 aa, chain - ## HITS:1 COG:CAC1686 KEGG:ns NR:ns ## COG: CAC1686 COG4122 # Protein_GI_number: 15894963 # Func_class: R General function prediction only # Function: Predicted O-methyltransferase # Organism: Clostridium acetobutylicum # 1 214 1 212 216 209 50.0 2e-54 MSNINYEYIEEYIRSLIPSKSGHLLEMRKYAEENHIPIVEEESEEFLKFLINFKKPNKIL ELGTAIGYSSIIFAMSSSSIEHIKTVEIKDEMVDIARNNIEIMKLSSIIEVVHGDAAEVL EKIDEKYDMIFIDAAKGQYENYFNMSLKNLSEDGIIICDNVLFRGMIANQELVKRRKITI VKRLRKFLKEIEENEEFISSIVPIGDGVLLIGRK >gi|289656140|gb|ADCS01000050.1| GENE 9 6430 - 8094 1873 554 aa, chain - ## HITS:1 COG:CAC1683 KEGG:ns NR:ns ## COG: CAC1683 COG0595 # Protein_GI_number: 15894960 # Func_class: R General function prediction only # Function: Predicted hydrolase of the metallo-beta-lactamase superfamily # Organism: Clostridium acetobutylicum # 2 554 3 555 555 673 59.0 0 MRNSNKLKIIPLGGMREVGKNLTLIEYRDEIIIVDCGMTFPEDEMLGIDVVIPDVTYLIK NQEKIKALVLTHGHEDHIGAIPYILKKLKMPIYGTPLTIGLLENKLKEHNLGKVELNVVR AGDKVKLGKMEVEWISVNHSIPDSCALAIKTPLGYVYHSGDFKVDFTPISGDVIDLQRIA QIGEKGVLAMIGESTNVLREGYTMSERKVGETFNRIFSQAGTNRIIIATFASNVHRIQQI INSAEKYGRRVVLSGRSMINVMETAQRLGYLKLKKGTLIDIKDMHKYNDDELVVITTGSQ GEPMSALTRIAYGEHRKIAVTPNDIVILSATPIPGNETSVFKVINKLLELGVNVIYESLT EIHVSGHACQEELKLILSLIRPKYFIPAHGEIRHLLKHAEVANSLGVSKENIFIMSNGNC LEISQKDAKFVGDVPSGNILVDGLGIGDVGNIVLRDRKHLSEDGLIVVVITMSKSEGKLV SGPDIISRGFVYVRESEGLIEDVRNVVKGTLGRCDRKSITDWTSLKTSIREDLKGFLFAQ TKRNPMILPIIMEI >gi|289656140|gb|ADCS01000050.1| GENE 10 8095 - 8544 474 149 aa, chain - ## HITS:1 COG:CAC1682 KEGG:ns NR:ns ## COG: CAC1682 COG0735 # Protein_GI_number: 15894959 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+/Zn2+ uptake regulation proteins # Organism: Clostridium acetobutylicum # 3 146 7 150 151 141 49.0 5e-34 MELNVEYVKNVLKNNGYKYTNQRAEVYNVFLNHRDEHLSTEDVFAYVSKEDPEIGIATVY RTLMLFEELGVLYKISFDDGVARYEIKTVGEGHRHHHLVCLDCGGITEVKLDLLDSLEEE IENDEKFKIVDHNLKFYGYCKDCYKKRRD >gi|289656140|gb|ADCS01000050.1| GENE 11 8553 - 8798 341 81 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|299144216|ref|ZP_07037296.1| ## NR: gi|299144216|ref|ZP_07037296.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 81 1 81 81 120 100.0 2e-26 MERHLFYDENNEPVEFIVKAKFTVDDTDYVAMLPADDLEPLIYILKIEVDDAGNEFLVGI EDEELEEATAVYEELMKDKLQ >gi|289656140|gb|ADCS01000050.1| GENE 12 8809 - 9219 576 136 aa, chain - ## HITS:1 COG:CAC1680 KEGG:ns NR:ns ## COG: CAC1680 COG0816 # Protein_GI_number: 15894957 # Func_class: L Replication, recombination and repair # Function: Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) # Organism: Clostridium acetobutylicum # 3 135 2 134 135 127 50.0 6e-30 MEKILGLDIGDKWIGVAVSDLLGITAQPLVTIKRESNKQAYEDIYNLIKENNIAKVVVGL PKNMNNTLGPQSEKVLKFSEKLKNKYGVEIIYIDERMTTISANRILIEGEVRRENRKQYV DKIAATYILQTYLDSK >gi|289656140|gb|ADCS01000050.1| GENE 13 9310 - 9564 405 84 aa, chain - ## HITS:1 COG:CAC1679 KEGG:ns NR:ns ## COG: CAC1679 COG4472 # Protein_GI_number: 15894956 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 22 82 23 83 86 76 60.0 9e-15 MDDKNYETQVFEKQSIETEKYRSILKSVYESLSEKGYNPVDQIIGYILSGDPTYITSYNN ARSIIQGVERDELLGELLKFYLKK >gi|289656140|gb|ADCS01000050.1| GENE 14 9617 - 12241 2732 874 aa, chain - ## HITS:1 COG:CAC1678 KEGG:ns NR:ns ## COG: CAC1678 COG0013 # Protein_GI_number: 15894955 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Alanyl-tRNA synthetase # Organism: Clostridium acetobutylicum # 1 874 1 876 881 839 51.0 0 MKNLKLHEIRSLYLNFFESKQHLMLPSFSLIPKNDKSLLLIGAGMAPMKKYFTGELTPPS RRVTTCQKCVRTGDIENVGKTDRHATFFEMLGNFSFGDYFKREAITWAWEFLTEQIEISK DDLWVTVYHEDDEAFRIWNEEIKVPKERIVKLGKDDNFWELEVGPSGPCSEIYVDRGEAY GCGDKNCKPGCDCDRFIEVWNLVFTQFDKDESGVYHPLKNPNIDTGMGLERLATVVQHTN NIFEIDAIQDIIREIEKISGYKYETDKKLDESVRVITDHIRAMTFMISDTIRPSNEGRGY VLRRFIRRAARHGRILGIKKSFLSELSDLIINSWGADYYPELIENRDNIKSVIKAEEEKF LETIEQGMSMLESHILDLKEKKLDILDGEYAFKLYDTYGFPVDLTAEILDENSIKLDRDG FDKNMDAQRKRARAARDDSDNIGWGSHDNEKIYEGLKNEFVGYEKDECKANIIELVKLNE LVDKLTKGERGIIILDKTPFYAESGGQAGDTGIIESDKFKIKVIDTKKNVKGLHLHMVEV EEGIVEKSEVSAKIDVIRRFNIRRNHSVTHLLHKALKEVLGNHVNQAGSEVLDNRMRFDF THFEAIDKEDLQKIEDRVNQKIFEALPVKTTITNPEDAYKLGAVGLFEEKYSSVVRVVTM GDYSMELCGGTHVSNTSEISMFKIISENGISSGVRRIESITGPAVYSYLNNLENLRDESA STLKSNKSDIIQKIKLLTENVKAYEKQIEELKLKTAKDEVSEIIKNVKKINSINYVTYRF NEVDVNTLRNLADEVREKVGSVVVLFATEIDDKVNFVCAVSQDLVKQKISAGNIVKEVAK VTGGGGGGRPDMATAGGKDASKIDLALEEIKNIL >gi|289656140|gb|ADCS01000050.1| GENE 15 12330 - 13556 1201 408 aa, chain - ## HITS:1 COG:BS_yueF KEGG:ns NR:ns ## COG: BS_yueF COG0628 # Protein_GI_number: 16080231 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Bacillus subtilis # 53 388 11 341 369 136 29.0 7e-32 MSSIKAVTPGFITTAVATLSIFLLFLIIYYLINIGNRYIDRNKRINIDLKLAIRILFGVV VLYSLKLIFNKYPIVSDTIWALIAAIIVSFLINPVVTYFETKKISRKYGVIIVYVSVILV LAILLIIVIPKTIQEITNLLKSIPSLIDQSGKILNDLSEKLNKSFNYDLPKNEQGRTIIE EIQNSINKYIVLVPEAILSKLKNLTMGMQTVFSKLLRFVLIFIFSFYFTVDKNKFKNILD SHIPVKHRNDILYIASRINSALHDFVKGRLLMAVFVGFATMVYLLILGVDFAVVIGIITC IADIIPYIGPFLGFVPAVLFAFIESPIKALWVAILFLLLQWAENNIIAPKLLADKTGLNP MVILIAIIIGGGVFGIWGMIFAVPIVSVALILIDFAKMKYNERNRNIV >gi|289656140|gb|ADCS01000050.1| GENE 16 13566 - 14693 1074 375 aa, chain - ## HITS:1 COG:MA2718 KEGG:ns NR:ns ## COG: MA2718 COG1104 # Protein_GI_number: 20091542 # Func_class: E Amino acid transport and metabolism # Function: Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes # Organism: Methanosarcina acetivorans str.C2A # 3 374 6 379 392 375 49.0 1e-103 MEIYLDNSATTKLDKEVLEEMLPYLTGEFANPSSIYTIARTTKQAIEKSRDLIADKLGAK SKEIFFTSGGSESDNWAIKGTVDANIGKHIITTPIEHHAVLNTFEYLEKKGYDVSYLKVD SDGIVDLEYLENILNENTALVSVMYANNEIGTIEPIEKIGNILKERNILFHVDGVQALSG IDFKLKDLPVDLMSFSAHKIRGPKGIGALYIKEGTKINPIIHGGSQERGRRAGTENVASI VGFAKAVDISRKNIKNDVKYIENLRNILMNSLLEIDGVYLNGSSKNRLSNNINISIEKVD VQALLMMLDMRGVYASSGSACTAGSMAPSHVLKSIGRSDELARNCLRLSLGIDNNIYEIN EASVIIREVIETLRR >gi|289656140|gb|ADCS01000050.1| GENE 17 14696 - 15094 350 132 aa, chain - ## HITS:1 COG:CAC1675 KEGG:ns NR:ns ## COG: CAC1675 COG1959 # Protein_GI_number: 15894952 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Clostridium acetobutylicum # 1 131 1 129 139 114 46.0 3e-26 MKLSTKGRYGLMAMYRLSLNYGNGPTPINDIAKEEKLSEAYLEQLFTLLKKKNLVKSIRG AAGGYELAKSPSEIKIGEILNALEGDIALSCSSMNIKPECRNVETCPTREILEKLQIKLE EVLDSMTLADMR >gi|289656140|gb|ADCS01000050.1| GENE 18 15106 - 15555 537 149 aa, chain - ## HITS:1 COG:CAC3292 KEGG:ns NR:ns ## COG: CAC3292 COG0822 # Protein_GI_number: 15896537 # Func_class: C Energy production and conversion # Function: NifU homolog involved in Fe-S cluster formation # Organism: Clostridium acetobutylicum # 1 142 1 143 143 168 62.0 4e-42 MNLNEIYTELILEHSKNKKNKRNLEEPTHIELGHNPSCGDEITLQLKIENDVIEDISYVG HGCAISQASTSIMIDIVKGVTVGKALELCEKFISMVKGEIGENELDELGDAIAFENIQNL PARVKCAVLAWHTLKDILENNKTEGSFTP >gi|289656140|gb|ADCS01000050.1| GENE 19 15545 - 16780 1379 411 aa, chain - ## HITS:1 COG:CAC3291 KEGG:ns NR:ns ## COG: CAC3291 COG0520 # Protein_GI_number: 15896536 # Func_class: E Amino acid transport and metabolism # Function: Selenocysteine lyase # Organism: Clostridium acetobutylicum # 12 411 7 408 408 417 50.0 1e-116 MLSKNEILDIRKDFNYLKLEKNFVYFDNGATVQKPNSIIKSIEDYYKFENGNPHRGAHYF AIKATEIYESARERVAKFLNAKSSNEVIFLRNTTEALNLVAYSWALENLKEGDEILLSIM EHHSNCVTWQYVANKTKANLVYLYIDDNKQITDEEFKSKISEKTKLFTITAASNVVGTMP DIKRYIKLAKEKSKNIKTIIDAAQFAPHQKIDVQNIDCDFLAFSGHKMFSAMGIGVLYGK EDILNSMNPFMYGGDMIEYVYEDNSTFLKSPQRFEAGTANVEGAKSLHAAIDYIENIGME NIAEYENSIMKYAYDKMLDIPYIDVYTTRTENRSPVLSFNFKQAHPHDVASILDSYNIGI RSGHHCAQPLHRFLGINFSCRASFSFYNTFEEIDYFIEHLESVRRMMGIES >gi|289656140|gb|ADCS01000050.1| GENE 20 16781 - 17827 1023 348 aa, chain - ## HITS:1 COG:CAC3290 KEGG:ns NR:ns ## COG: CAC3290 COG0719 # Protein_GI_number: 15896535 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, permease component # Organism: Clostridium acetobutylicum # 8 348 9 362 366 196 39.0 5e-50 MNTKILGNSLTFKTFGWLKVNNTEIFMPEGIKQEYYLKSDKKLDVEEFKNVKYGVSEECI ELNDKFGNLYRSYVSSKDAEINEIVDLKQDSKNNILFDTHDLIAEENSKLNLILNYNSIS NSDKYRNSIIRILAKENSQVNLYVIQNGDEKSFSLESIFVKTEKNSSVNLCQFELGSKEL YTNFQGNLIGNESNLNIDSIYFGYDDNKINMLYDILHYGEATKSEVVVNGALKDDSYKNF KSTLDFKEGSSFAVGSEEEYVVLMDDSVTALSVPILLAHEDNVEGNHAASAGKIDQQLLF YIMSRGFNQVEAESLIIESKFSRAINKLENEELKEKLWKNIFGIARRR >gi|289656140|gb|ADCS01000050.1| GENE 21 17837 - 19255 1630 472 aa, chain - ## HITS:1 COG:CAC3289 KEGG:ns NR:ns ## COG: CAC3289 COG0719 # Protein_GI_number: 15896534 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, permease component # Organism: Clostridium acetobutylicum # 7 470 4 466 466 664 66.0 0 MPREVRKKTQIEEMDRGIYDIKNEVVYRSKTEKGLTEEIVRQISKEKDEPEWMLEYRLKA LEIFNEKENPVWGPDISEVDIEKITTYIRPDADLTDDWNLVPDEIRDTFDKLGIPEAEKE ALLSGVGAQYDSEVVYHNIQKYLLDQGVVYTDFESGLREYPEIVKKYFGKCISPNLHKYA ALHYAVWSGGSFVYVPKGVRVDVPLQSYFRLNAPGAGQFEHTLIIVEDDAYCHFIEGCSA PKYNVVNLHAGAVELFIGENSTLRYSTIENWSRNMYNLNTKRAIVEKNGKIEWVSGSFGS KVSMLYPASVLVGDYATSEFTGISFAGVGQNIDTGAQVIHAASYTTSTVNSKSISKSGGI AVYRGLVKVAEGAHDCKSSVSCESLMLDSLSRSDTIPVIDIKNKSVDLGHEAKIGRISDQ VIFYLMSRGISENDAKAMVVRGFAEPIAKELPMEYAVEMNNLISLELEGSIG >gi|289656140|gb|ADCS01000050.1| GENE 22 19257 - 19544 241 95 aa, chain - ## HITS:1 COG:CAC3288 KEGG:ns NR:ns ## COG: CAC3288 COG0396 # Protein_GI_number: 15896533 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, ATPase component # Organism: Clostridium acetobutylicum # 1 87 155 241 248 121 67.0 4e-28 EILQMIMLNPKLAILDETDSGLDVDAIRTVSESISRFLNENNSVLIITHHRQLIKSIKPD YVHIMLNGKLVKTGDISFVDKIENEGFSWIREEVK Prediction of potential genes in microbial genomes Time: Fri May 27 07:44:46 2011 Seq name: gi|289656139|gb|ADCS01000051.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.51, whole genome shotgun sequence Length of sequence - 15433 bp Number of predicted genes - 14, with homology - 14 Number of transcription units - 7, operones - 2 average op.length - 4.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 734 188 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 + Prom 836 - 895 11.9 2 2 Tu 1 . + CDS 948 - 2192 1253 ## COG1253 Hemolysins and related proteins containing CBS domains - Term 2155 - 2210 10.2 3 3 Tu 1 . - CDS 2213 - 2578 312 ## gi|299144230|ref|ZP_07037310.1| conserved hypothetical protein - Prom 2675 - 2734 12.0 - Term 2663 - 2730 20.1 4 4 Op 1 2/0.000 - CDS 2754 - 3842 1095 ## COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake 5 4 Op 2 2/0.000 - CDS 3845 - 5362 1382 ## COG0606 Predicted ATPase with chaperone activity 6 4 Op 3 1/0.000 - CDS 5374 - 5727 402 ## COG0792 Predicted endonuclease distantly related to archaeal Holliday junction resolvase 7 4 Op 4 8/0.000 - CDS 5727 - 6341 732 ## COG0164 Ribonuclease HII 8 4 Op 5 . - CDS 6343 - 7182 1112 ## COG1161 Predicted GTPases - Prom 7212 - 7271 14.3 9 5 Op 1 26/0.000 - CDS 7279 - 8229 1386 ## COG1079 Uncharacterized ABC-type transport system, permease component 10 5 Op 2 24/0.000 - CDS 8222 - 9328 1042 ## COG4603 ABC-type uncharacterized transport system, permease component 11 5 Op 3 15/0.000 - CDS 9318 - 10853 192 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 - Prom 10873 - 10932 4.5 - Term 10901 - 10953 7.5 12 5 Op 4 . - CDS 10959 - 12080 1607 ## COG1744 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein - Prom 12104 - 12163 10.9 13 6 Tu 1 . - CDS 12193 - 12852 556 ## COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases - Prom 12899 - 12958 11.2 + Prom 12890 - 12949 13.7 14 7 Tu 1 . + CDS 12969 - 15432 2572 ## COG0744 Membrane carboxypeptidase (penicillin-binding protein) Predicted protein(s) >gi|289656139|gb|ADCS01000051.1| GENE 1 3 - 734 188 244 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 5 228 1 221 245 77 25 7e-14 MYRELLRIENLSAGIEEKEILHNINLNINYGEVHVIMGPNGSGKSTLANVIMNNPEYVVN SGDIFLEGENISELSTDKRARKGLFMSFQTPMEVSGVSVENFIRTAKSTIEDKNISILKF KKELQDEMDKLSMDHSYADRYLNQGFSGGEMKKNEILQMIMLNPKLAILDETDSGLDVDA IRTVSESISRFLNENNSVLIITHHRQLIKSIKPDYVHIMLNGKLVKTGDISFVDKIENEG FSWI >gi|289656139|gb|ADCS01000051.1| GENE 2 948 - 2192 1253 414 aa, chain + ## HITS:1 COG:TM0845 KEGG:ns NR:ns ## COG: TM0845 COG1253 # Protein_GI_number: 15643608 # Func_class: R General function prediction only # Function: Hemolysins and related proteins containing CBS domains # Organism: Thermotoga maritima # 13 414 19 429 455 193 33.0 5e-49 MDFFHYLYLALFIIFLFLSFEFTLIENAYQNLSNIKIKKLEEKKLKNIELIKKLYDDNNI FSAILIGDYSSNSMVAISLCLFLYSLYEIKGLIIACIISPLIIIIIGENVPKSLGIQKYE KVVQKKAYFLFIATSVLKPLSYLIEIKSKILIKLSGGDINYKEPLITEDDLIDAVSLGME EGLLNKSESIIIENVMDFRDSYAKDIMTPRTDIIAVNVNDSYEDIVKIVNEEAFSRMPVY NEDLDDIIGILHVKDLLLLPNDMILKDHLDILKPPFYTYEYKPVGPLFNEMRHKKVSVAI INDEYGGTEGMITLEDLVEKIVGSISDEYDEDEDEDIIKISPKEYLIDGAMNIDELNHIL GLNLESDEIDSIAGYIIEKIDRFPKKGETITIDNLKFTVKESSKNRIEKLILKL >gi|289656139|gb|ADCS01000051.1| GENE 3 2213 - 2578 312 121 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|299144230|ref|ZP_07037310.1| ## NR: gi|299144230|ref|ZP_07037310.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 121 1 121 121 205 100.0 6e-52 MKKIIFDMSPLGNFSPSCKAYYTYYNEKFSRKIFFYTRCDDGTYLRVDELENEEELKNRI ITFKDLGQRVCEIPFNDDIRVPPIDESFEDDDILKRIVERLGDKASWKNSELRLIEVEDE F >gi|289656139|gb|ADCS01000051.1| GENE 4 2754 - 3842 1095 362 aa, chain - ## HITS:1 COG:TM0250 KEGG:ns NR:ns ## COG: TM0250 COG0758 # Protein_GI_number: 15643022 # Func_class: L Replication, recombination and repair; U Intracellular trafficking, secretion, and vesicular transport # Function: Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake # Organism: Thermotoga maritima # 64 354 48 330 337 203 39.0 3e-52 MNYREFLIYLNAIGLDNSQIIKIEEFIISEKIDYRNFLDANFVKSVSKNFSKQLIGKLIN YKPELLEKLYDYTIKNDISIFTSEDIFYPKNLLNIIDYPRVLYVKGNLTDGDNNSIAIVG ARNNSDYGRCVVDYIVDLLSDYEISIVSGLAYGIDGLAHKRALKNNMKTIAVLGSGVDVI YPIKNKKLYYDIVENGAVVSEYPPTSSPIAYRFPLRNRIISGLSLGVIVVEAKAKSGSLI TARLAAEQGREVFAVPGNINSQYSEGTNLLIRDGAKIFTSIDDLLDLIPQIKSKNTGIKN VDLDLGEDENRVLNEIKNGITDINLISINIGEDISYVSSILTVLELKDIIIISGNNILLN IK >gi|289656139|gb|ADCS01000051.1| GENE 5 3845 - 5362 1382 505 aa, chain - ## HITS:1 COG:CAC1765 KEGG:ns NR:ns ## COG: CAC1765 COG0606 # Protein_GI_number: 15895042 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted ATPase with chaperone activity # Organism: Clostridium acetobutylicum # 5 499 6 500 506 472 49.0 1e-133 MYSCVKTCSLQGLSGDVIEAQADITNGLPKFTIVGLPDTAIKESGERVRSGIKNSGFEFP LKRITINLAPANLKKDGSQMDFAIAMAVLVATSQVREIKNEFVFLGELSLDGQLNEITGA LPMIISLREKGYKNFIIPNSNKKECSLITDVNIFPVKNLREAVDFLNGEIEIQRYSEEFY IKDSEYEIDFSDMKGQGFLKRALEVSAAGRHNILLVGVPGSGKSMAAKRFPTILPKLSFD EAIEVTKIYSISGLLKENKLIANPPFRAPHHTSSAISLIGGGRIPKPGEISLAHNGVLFL DELPEFPKYVLEVLRQPLEDKTINIARVNASLSYPAKFILIAAMNPCPCGFNGSNDHECT CSVSEINRYLSKISHPLLDRIDIHVEVSAVKYSDLSKDIKEESSSEIRKRVELARNIQIE RFKDSNILSNSDIRENQISKYCKLSDKCRNVMDIAFKKYKFSARTYNKILKVARTIADLE GNTEICVENLLEAIRYRSLDSKYWS >gi|289656139|gb|ADCS01000051.1| GENE 6 5374 - 5727 402 117 aa, chain - ## HITS:1 COG:CAC1763 KEGG:ns NR:ns ## COG: CAC1763 COG0792 # Protein_GI_number: 15895040 # Func_class: L Replication, recombination and repair # Function: Predicted endonuclease distantly related to archaeal Holliday junction resolvase # Organism: Clostridium acetobutylicum # 3 116 5 122 122 78 40.0 3e-15 MNNRNLGAIGESIATKFLEDKGYKILDKNYRALGTEIDIVALDGDILVFIEVKSRSSKKF GNAFEAVNGFKIQNIIRTSMSYIVSKQLDSFQVRYDVVEYYINENYINHIENAFEVV >gi|289656139|gb|ADCS01000051.1| GENE 7 5727 - 6341 732 204 aa, chain - ## HITS:1 COG:BS_rnh KEGG:ns NR:ns ## COG: BS_rnh COG0164 # Protein_GI_number: 16078669 # Func_class: L Replication, recombination and repair # Function: Ribonuclease HII # Organism: Bacillus subtilis # 4 197 61 248 255 189 49.0 3e-48 MVENFEGEYSSRGYKYIVGIDEVGRGALFGDVVTCAIIMPLDSRIEGITDSKKLSEKKRE KYFDEILEEAVAVGIGRMDCKTIDEVNIKNATHYAMLNAIENLKDKDGNYIKPDLLLIDA EKIDTDIEQVSIIKGDEKCYTISCASIIAKVYRDRLCKEWALSYPEYGLEKHKGYGTKQH REAIKEHGPSPMHRLSFIKNRGEW >gi|289656139|gb|ADCS01000051.1| GENE 8 6343 - 7182 1112 279 aa, chain - ## HITS:1 COG:CAC1761 KEGG:ns NR:ns ## COG: CAC1761 COG1161 # Protein_GI_number: 15895038 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Clostridium acetobutylicum # 2 278 5 282 283 243 49.0 2e-64 MNINWYPGHMKKTIEDIEAKTKLVDFYIEIIDSRIPISSRNPLLNKVLSNKKGLLVLNKS DLSEESQNRKWAEKLSTDNKKAILYSAAKPNVNKIINESMNLMAAEIEKSKEKGINMGPL RAMIVGIPNSGKSTFINGISKRKSAKTGNRPGVTKTNQWIKLNPKIHLLDTPGVLWPKFE DQNIALNLAFTGAIKDEIMDTETLCLKLIERLLGLDSSILEDRYKVTTAEKTPVEIMEAI GMIRGAKLRGNEIDYTKVSNLILDEFRKGVLGRITLERA >gi|289656139|gb|ADCS01000051.1| GENE 9 7279 - 8229 1386 316 aa, chain - ## HITS:1 COG:CAC0705 KEGG:ns NR:ns ## COG: CAC0705 COG1079 # Protein_GI_number: 15893993 # Func_class: R General function prediction only # Function: Uncharacterized ABC-type transport system, permease component # Organism: Clostridium acetobutylicum # 11 314 14 307 310 225 44.0 1e-58 MNSIFGIISTTLLYSAPLIYAALGGIISENGGVVNIGIEGMMTIGALIGATVGYFSGNPW LAFLCGGLAGMALALLHAIATVNFAADHVVSGIAINLIGPGLALFLSRIFFEGAAMTKSI PFENQLPQVFNGVFTKELIEAYPWMRYMKMVFQQYIVVYIAFALVFVVWYLLYKTKLGLR IRAVGEHPQAAETLGVDAYKIKYICVLASGFLAGLGGASMSLAVVSNYRQTLISGQGFIA LAAVIFGGWKPQGAFAACLLFGAAQGLSVTLGNIGIKIDSNLLSMLPYIITLLVLIIFVK GSNAPSADGKPFERDK >gi|289656139|gb|ADCS01000051.1| GENE 10 8222 - 9328 1042 368 aa, chain - ## HITS:1 COG:BB0678 KEGG:ns NR:ns ## COG: BB0678 COG4603 # Protein_GI_number: 15595023 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Borrelia burgdorferi # 5 357 18 370 383 222 36.0 8e-58 MKNKSRFFYTVVSIILGLIFGSIILMINKINPLAAYKVIILGAVGKPSYISWTIINAVPI ILTGVSVAFAFKTGLFNIGAEGQYIVGSIGALLVGYFFKLPPVIHPIFALMGGALFGGLW GSVVGYLKSRFSVNEVISSIMMNWIGFYLSNYMLGISILRKPSSDTTFSILPTANIEFLK SWKTSEAGIAFLQNHKMLKQFLRPPINWGMVVAIIVAFVIWYILKKTTLGYQLRAVGFNK YAAEYGGINIKRNQVISMTISGMISGLAGAITVLGVSQNISMMAAQQGYGFNGMAVALIA GNNPLACIPAGLLFAGLNYGGGKLNAALNTHSEVISIVIGIITFFIAMPKLLDLISLIIP KKEGKKHE >gi|289656139|gb|ADCS01000051.1| GENE 11 9318 - 10853 192 511 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 263 508 5 240 305 78 27 3e-14 MDNMQKENLAVEMRNITKKFGDFVANDNINLDIRRGEIHALLGENGAGKSTLMNILYGLY AQTEGDIYINGKKTIISDPNAAIKNGLGMVHQHFMLVEPFTVVENIILGMEPVKGISLDL KTARKNVVEISEKYGLKINPDEKIENISVGMQQRVEILKALYRGADILIFDEPTAVLTPQ EIDELINIIKNLAKKNKTIIIITHKLKEIKAMADRCTIIRRGKKIDTVDVCNVSESELAD MMVGRQVELKVDKKEQEPGDVILKVENLVVKDIRNINKVDGLNLELKSGEILGIAGVDGN GQSELLEALTGLKTIESGKIFLNGKDITNKTPKEIQNSGMHNIPEDRQKRGLVLDFNIAE NLILENYYKEKFSKKGILKEKEIEAFAQELVEKFDVRPTDIKYIAGSLSGGNQQKVIIAR EITNDPDVLIAAQPTRGLDVGAIEYVHKYLVEQRNKGKAVLLISFELDEVFALSDRISVI YDGKISKTLKRTETDEREVGLLMAGGGIVEE >gi|289656139|gb|ADCS01000051.1| GENE 12 10959 - 12080 1607 373 aa, chain - ## HITS:1 COG:CAC0702 KEGG:ns NR:ns ## COG: CAC0702 COG1744 # Protein_GI_number: 15893990 # Func_class: R General function prediction only # Function: Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein # Organism: Clostridium acetobutylicum # 48 369 39 351 357 234 42.0 2e-61 MKKRNSLIALILVFALALVGCGQKSNAPANNKAENNKAEETSEAKSDIVVGFVTDEGGIN DQSFNQGVWEGVEKAKEDFGIASKFKESKDSNEYMPNFETLLDEGANLIVGAGFKMGDVV IETAKNNPDVKFAIVDVDPTVGYDKDGNMVDVEAPANLLGIMFKAQEPSFLVGYIAGHTT ESNVVGFVGGQESVLIGAFEYGFTAGVKYAANELGKEIEVKSQYAGNFTDAQKGKAIANQ MFEQGADVIFHAAGGVGDGVIKSAEEHGKWAIGVDRDQLEVAPNNVLTSAMKNANVAVYN VIKELVEEGKFEGGRTIELGLKDAGAVGIAPTSDKHVAKEVLDKVEEIKNKIVAEEIVVP HDAETYDAFVKAL >gi|289656139|gb|ADCS01000051.1| GENE 13 12193 - 12852 556 219 aa, chain - ## HITS:1 COG:CAC0884 KEGG:ns NR:ns ## COG: CAC0884 COG0664 # Protein_GI_number: 15894171 # Func_class: T Signal transduction mechanisms # Function: cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases # Organism: Clostridium acetobutylicum # 7 208 14 213 229 84 32.0 1e-16 MPNVSELFSKLKNEEIKYFLDKSKAIIEKLNKGDEIFRQEQEVKYLFILKKGSVVVENID VNGKRSIVNIFNKEGTVFGEVYLYIDKNSYDYNCFANESTEIIKIPKEAFFLSENSDDIS KKILNNMLIILSNKAYYLNQKLLIFNSISLRQKISKYLLQNSNKDNFFKMVLKREELAHF LGATRPSVSRELMNMQKDGLIEIDRDIIKFDRKELEKFL >gi|289656139|gb|ADCS01000051.1| GENE 14 12969 - 15432 2572 821 aa, chain + ## HITS:1 COG:alr5326 KEGG:ns NR:ns ## COG: alr5326 COG0744 # Protein_GI_number: 17232818 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase (penicillin-binding protein) # Organism: Nostoc sp. PCC 7120 # 61 750 72 637 643 269 29.0 2e-71 MKKTQKRKRKSSGFSSFVKILFILILMALVTAATFTGSYVLSVIKRAPKIDPENYRTVIN ETSRVYDDKEQLIQTLVLNEFSEYVNIDKIPINLQKAVLAIEDERFYSHGAVDFKRVIGA TVANLKAHKIVQGGSTITMQLAKNLYTDYQKSFERKLTDIFYAYELESVLTKDQILEAYL NSAGFSKGTVGVQAAAKTFFNKDVSELNLAECALVAGITNRPEKYSPYNRIDVTLEDDLE NLEIVLIPTPKDTINSEETIQIGKRLAELGKIDSFDLNQIERSIMRPMKAIFNPVSKERQ ELILKLMLKQGYIDQAQHDEAINAPINIDIGNREEKGVSSFYVDEVKKETVSILKSLGYS EEDANKKLYAGGLKIYSSMNLDLQKSMEETVSNNSYFPNAWIDDNGIPQPQVAAVLTDPH TGQVKALIGGRNISGGSNLNRATTPRSPGSSIKPISVYMTAFKYGATAGDVYLDETLPSS QFKGWRPRNNGNSYIGWTTIRTLLKRSSNVGAYLVARDIGCDYESNANKNSVYSKAVNEP KAVELIKENLESIGVTSLVWPKNFGNTKTTDENLPDENKDAPVMPDDANFSALALGGMTH GISPLEMAGAYSTLANEGVYQKPTFVDKILSTNGEIIYENKHEGEQVLSEGNAFIITNIL EDVVKSGTGTSANFSRMHIAGKTGTTNQQKEVWFVGYTPYYLCSVFIGNDRHESLHFSSN VAAALWRGIMKPIHADLENKEFVQPDNVIRKYVPGADRSEYFVENTKPHYTNKLFWYEED EDEDNDNNTNSDDNGKKSKSTKKKKSSKSTNSNYRTENLKN Prediction of potential genes in microbial genomes Time: Fri May 27 07:45:23 2011 Seq name: gi|289656138|gb|ADCS01000052.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.52, whole genome shotgun sequence Length of sequence - 107202 bp Number of predicted genes - 94, with homology - 93 Number of transcription units - 38, operones - 20 average op.length - 3.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 1832 2055 ## COG0480 Translation elongation factors (GTPases) - Prom 1875 - 1934 9.0 2 2 Op 1 . - CDS 1952 - 2410 510 ## EUBELI_01717 hypothetical protein 3 2 Op 2 8/0.000 - CDS 2460 - 2885 512 ## COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases 4 2 Op 3 11/0.000 - CDS 2886 - 4121 1289 ## COG0304 3-oxoacyl-(acyl-carrier-protein) synthase 5 2 Op 4 26/0.000 - CDS 4118 - 4849 250 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 6 2 Op 5 3/0.000 - CDS 4842 - 5822 851 ## COG0331 (acyl-carrier-protein) S-malonyltransferase 7 2 Op 6 . - CDS 5804 - 6739 954 ## COG2070 Dioxygenases related to 2-nitropropane dioxygenase 8 2 Op 7 . - CDS 6736 - 7644 871 ## COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III 9 2 Op 8 10/0.000 - CDS 7629 - 8540 905 ## COG0825 Acetyl-CoA carboxylase alpha subunit 10 2 Op 9 4/0.000 - CDS 8518 - 9399 717 ## COG0777 Acetyl-CoA carboxylase beta subunit 11 2 Op 10 27/0.000 - CDS 9399 - 10769 1462 ## COG0439 Biotin carboxylase 12 2 Op 11 . - CDS 10763 - 11224 296 ## COG0511 Biotin carboxyl carrier protein 13 2 Op 12 . - CDS 11221 - 11445 400 ## COG0236 Acyl carrier protein - Prom 11495 - 11554 14.3 14 3 Tu 1 . - CDS 11601 - 13472 1192 ## PROTEIN SUPPORTED gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 - Prom 13563 - 13622 13.0 + Prom 13380 - 13439 8.9 15 4 Tu 1 . + CDS 13588 - 14142 646 ## Clos_2533 hypothetical protein + Term 14146 - 14177 3.1 - Term 14171 - 14201 -0.9 16 5 Tu 1 . - CDS 14317 - 14733 246 ## PROTEIN SUPPORTED gi|148996730|ref|ZP_01824448.1| 30S ribosomal protein S9 - Prom 14778 - 14837 4.7 - Term 14867 - 14902 5.3 17 6 Op 1 35/0.000 - CDS 14908 - 16638 204 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 18 6 Op 2 . - CDS 16641 - 18377 203 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 19 6 Op 3 . - CDS 18423 - 19049 523 ## Elen_1489 transcriptional regulator, TetR family - Prom 19079 - 19138 11.0 - Term 19142 - 19181 3.5 20 7 Op 1 . - CDS 19316 - 19729 405 ## FMG_1493 hypothetical protein 21 7 Op 2 . - CDS 19756 - 20079 265 ## gi|299144257|ref|ZP_07037337.1| putative arginine/lysine decarboxylase 22 7 Op 3 . - CDS 20107 - 20976 921 ## Apar_1268 beta-lactamase domain protein 23 7 Op 4 . - CDS 20989 - 21438 314 ## COG0716 Flavodoxins - Prom 21459 - 21518 5.1 24 7 Op 5 . - CDS 21535 - 22167 712 ## Apre_0710 hypothetical protein - Prom 22311 - 22370 11.3 - Term 22325 - 22366 8.1 25 8 Tu 1 . - CDS 22401 - 24749 2925 ## Apre_1818 copper amine oxidase domain protein - Prom 24880 - 24939 12.2 - Term 24925 - 24961 2.1 26 9 Op 1 . - CDS 25004 - 25477 644 ## COG5632 N-acetylmuramoyl-L-alanine amidase 27 9 Op 2 . - CDS 25474 - 26031 611 ## Clos_2530 ECF subfamily RNA polymerase sigma-24 factor - Prom 26076 - 26135 9.8 + Prom 26781 - 26840 6.5 28 10 Op 1 . + CDS 26868 - 28175 1322 ## COG3572 Gamma-glutamylcysteine synthetase 29 10 Op 2 . + CDS 28168 - 29487 1299 ## FMG_1567 hypothetical protein - Term 29567 - 29635 2.7 30 11 Tu 1 . - CDS 29661 - 32366 3529 ## COG0474 Cation transport ATPase - Prom 32487 - 32546 3.8 - Term 32380 - 32415 5.1 31 12 Tu 1 . - CDS 32548 - 33834 1379 ## COG0172 Seryl-tRNA synthetase - Prom 34052 - 34111 8.4 - Term 34099 - 34144 6.8 32 13 Tu 1 . - CDS 34145 - 35092 598 ## PROTEIN SUPPORTED gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 - Prom 35136 - 35195 10.7 + Prom 35113 - 35172 12.0 33 14 Op 1 . + CDS 35200 - 36864 1323 ## COG4907 Predicted membrane protein + Prom 36879 - 36938 13.0 34 14 Op 2 . + CDS 36968 - 37543 654 ## COG0518 GMP synthase - Glutamine amidotransferase domain - Term 37385 - 37423 -0.6 35 15 Op 1 1/0.000 - CDS 37534 - 38718 1349 ## COG0793 Periplasmic protease 36 15 Op 2 2/0.000 - CDS 38732 - 39925 1321 ## COG0739 Membrane proteins related to metalloendopeptidases 37 15 Op 3 28/0.000 - CDS 39941 - 40840 992 ## COG2177 Cell division protein 38 15 Op 4 . - CDS 40837 - 41514 339 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) + Prom 41606 - 41665 10.9 39 16 Op 1 . + CDS 41691 - 42266 781 ## COG0212 5-formyltetrahydrofolate cyclo-ligase 40 16 Op 2 . + CDS 42266 - 43447 1370 ## CTC01949 hypothetical protein + Term 43466 - 43528 15.1 - Term 43459 - 43510 12.2 41 17 Op 1 . - CDS 43514 - 44596 1117 ## CPE0251 hypothetical protein - Term 44612 - 44649 6.1 42 17 Op 2 . - CDS 44659 - 46161 1363 ## gi|299144276|ref|ZP_07037356.1| conserved hypothetical protein - Prom 46219 - 46278 13.1 + Prom 46265 - 46324 7.8 43 18 Tu 1 . + CDS 46381 - 47712 1107 ## COG3735 Uncharacterized protein conserved in bacteria + Term 47791 - 47826 4.4 - Term 47774 - 47822 4.1 44 19 Tu 1 . - CDS 47823 - 48842 831 ## gi|299144278|ref|ZP_07037358.1| conserved hypothetical protein - Prom 48877 - 48936 7.9 + Prom 49059 - 49118 9.3 45 20 Tu 1 . + CDS 49336 - 50181 730 ## SSA_1454 hypothetical protein + Term 50306 - 50351 5.2 + Prom 50551 - 50610 14.5 46 21 Tu 1 . + CDS 50641 - 52146 1846 ## COG4690 Dipeptidase - Term 52142 - 52188 4.3 47 22 Tu 1 . - CDS 52267 - 53061 861 ## COG0500 SAM-dependent methyltransferases - Prom 53156 - 53215 8.4 - Term 53296 - 53341 7.4 48 23 Op 1 . - CDS 53386 - 53940 453 ## Arch_1039 hypothetical protein 49 23 Op 2 40/0.000 - CDS 53975 - 55267 717 ## COG0642 Signal transduction histidine kinase 50 23 Op 3 5/0.000 - CDS 55291 - 55944 717 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 55980 - 56039 8.5 - Term 56059 - 56098 8.6 51 24 Op 1 36/0.000 - CDS 56101 - 57477 1242 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 52 24 Op 2 36/0.000 - CDS 57489 - 58136 247 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 53 24 Op 3 . - CDS 58143 - 59420 1084 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 54 24 Op 4 . - CDS 59447 - 60280 550 ## COG0348 Polyferredoxin 55 24 Op 5 . - CDS 60330 - 60482 237 ## CD1871A hypothetical protein 56 24 Op 6 . - CDS 60509 - 61666 1568 ## CD1871 hypothetical protein - Prom 61852 - 61911 12.4 57 25 Op 1 . - CDS 62638 - 63675 578 ## EUBREC_3023 hypothetical protein 58 25 Op 2 2/0.000 - CDS 63689 - 65212 933 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs 59 25 Op 3 2/0.000 - CDS 65217 - 66896 923 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs 60 25 Op 4 . - CDS 66897 - 68564 787 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs - Prom 68600 - 68659 4.3 - Term 68662 - 68701 -0.5 61 26 Tu 1 . - CDS 68707 - 69009 234 ## gi|299144295|ref|ZP_07037375.1| conserved hypothetical protein - Term 69326 - 69383 12.1 62 27 Tu 1 . - CDS 69400 - 69810 298 ## CDR20291_1808 putative sigma factor - Prom 69966 - 70025 6.2 - Term 69960 - 70016 0.1 63 28 Op 1 1/0.000 - CDS 70130 - 71476 1408 ## COG0534 Na+-driven multidrug efflux pump 64 28 Op 2 35/0.000 - CDS 71508 - 73253 229 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 65 28 Op 3 . - CDS 73246 - 75036 249 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 66 28 Op 4 . - CDS 75026 - 76423 1236 ## COG1122 ABC-type cobalt transport system, ATPase component 67 28 Op 5 . - CDS 76480 - 77241 281 ## TDE1604 ABC transporter, permease protein, putative 68 28 Op 6 . - CDS 77183 - 77779 606 ## FMG_1416 hypothetical protein - Prom 77857 - 77916 10.3 - Term 77856 - 77915 10.2 69 29 Tu 1 . - CDS 77922 - 78560 644 ## TDE1606 TetR family transcriptional regulator - Prom 78593 - 78652 14.7 70 30 Op 1 . + CDS 78895 - 79245 144 ## CD1870 putative conjugative transposon mobilization protein 71 30 Op 2 . + CDS 79251 - 80582 917 ## COG3843 Type IV secretory pathway, VirD2 components (relaxase) + Term 80677 - 80717 -0.8 - Term 80459 - 80506 7.1 72 31 Tu 1 . - CDS 80598 - 80990 250 ## SGO_0340 hypothetical protein - Prom 81030 - 81089 6.4 + Prom 81030 - 81089 8.2 73 32 Op 1 . + CDS 81128 - 81463 436 ## COG1733 Predicted transcriptional regulators 74 32 Op 2 . + CDS 81417 - 81545 80 ## + Term 81628 - 81667 1.6 - Term 81477 - 81517 7.0 75 33 Op 1 . - CDS 81525 - 82343 899 ## SZO_12610 hypothetical protein - Term 82357 - 82385 0.6 76 33 Op 2 . - CDS 82386 - 91229 7057 ## COG4646 DNA methylase 77 33 Op 3 . - CDS 91279 - 91830 625 ## SEQ_1255 conjugative transposon hypothetical protein 78 33 Op 4 . - CDS 91834 - 93549 1375 ## COG0550 Topoisomerase IA - Prom 93577 - 93636 3.3 - Term 93566 - 93604 5.6 79 34 Op 1 . - CDS 93638 - 94495 959 ## CD1858 putative cell surface protein 80 34 Op 2 . - CDS 94473 - 94709 242 ## SZO_12840 hypothetical protein 81 34 Op 3 . - CDS 94727 - 97024 1384 ## COG0791 Cell wall-associated hydrolases (invasion-associated proteins) 82 34 Op 4 . - CDS 97029 - 99458 2199 ## COG3451 Type IV secretory pathway, VirB4 components 83 34 Op 5 . - CDS 99370 - 99759 378 ## CD0417 hypothetical protein 84 34 Op 6 . - CDS 99763 - 100026 175 ## SZO_12880 hypothetical protein 85 34 Op 7 . - CDS 100043 - 100906 1024 ## CDR20291_1789 putative conjugative transposon membrane protein 86 34 Op 8 . - CDS 100926 - 101141 461 ## CD1852 putative conjugative transposon membrane protein 87 34 Op 9 . - CDS 101143 - 101454 344 ## CD0413 putative single-strand binding protein - Prom 101474 - 101533 6.7 - Term 101476 - 101519 5.3 88 35 Op 1 . - CDS 101627 - 102064 466 ## SZO_12560 hypothetical protein 89 35 Op 2 . - CDS 102137 - 102856 666 ## COG3505 Type IV secretory pathway, VirD4 components 90 36 Tu 1 . - CDS 102958 - 103143 252 ## gi|299144323|ref|ZP_07037403.1| conserved hypothetical protein - Prom 103178 - 103237 1.7 - Term 103165 - 103202 1.4 91 37 Op 1 . - CDS 103245 - 104282 682 ## HMPREF0424_1167 hypothetical protein 92 37 Op 2 . - CDS 104356 - 104679 348 ## FMG_0971 hypothetical protein - Prom 104719 - 104778 6.1 93 38 Op 1 . - CDS 104864 - 105577 417 ## FMG_0972 putative replisome organizer 94 38 Op 2 . - CDS 105659 - 107194 772 ## COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member Predicted protein(s) >gi|289656138|gb|ADCS01000052.1| GENE 1 2 - 1832 2055 610 aa, chain - ## HITS:1 COG:FN1546 KEGG:ns NR:ns ## COG: FN1546 COG0480 # Protein_GI_number: 19704878 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factors (GTPases) # Organism: Fusobacterium nucleatum # 1 610 3 614 690 619 52.0 1e-177 MKVYKTEQVRNLALVGHSGSGKTNLTEAMLFQSGATKKIGHVSEKNTISDFSKEEMERGT SIGTSIIPVEWRNYKVNIIDTPGYLDFIGEAYGALRASEAVLMVIDATAGVEVGTERMWK YTEKIGLPRIIFVNKIDGENVNFRKLMEELENSFGKKVIPFSVPIGEGESFVGVTDVIYQ KGFKYKNGAPEETELTHDQVKATERMYEEIAEVVAGSDEVLMEKYFSGEKFTREDLLRGV TSALLSGDAVPLLVGSGEKGIGIDILLNTIVNYMPAPDDERAHLGFRYDEGEERTVDAKE PFAAVVFKTITDPFVGKISIFKVISGKLTKDTPIYNMNKEETEKLGGLFVIRGKTQFEVT EIEAGDIGATTKLGATETGDTLCDKAHGVKFKKLQYPAPVLYYAIEPKTKGDEEKLGTSL KRLREEDPSFTIERNTETKQLTIGGQGKVQLDVILEKLKNMFGVEVNIIPFIIPYRETIK GTASVQGKHKKQSGGAGQYGDVWVRFEPCEEDFVFDEEVFGGSVPKNYFPAVEKGIIESK EHGVLAGYPVTNFKAVLYDGSYHDVDSNEMSFKIAASLAFKKGMEEAKPTLLEPIMKVEV SIPDSYLGDV >gi|289656138|gb|ADCS01000052.1| GENE 2 1952 - 2410 510 152 aa, chain - ## HITS:1 COG:no KEGG:EUBELI_01717 NR:ns ## KEGG: EUBELI_01717 # Name: not_defined # Def: hypothetical protein # Organism: E.eligens # Pathway: not_defined # 1 143 1 143 145 149 56.0 3e-35 MFEHVFKELYDKFKLNFYRNIFGGFAERESSLTATETFCTEVIYALDKPTINEMGKFLNI SQPNITYKVNNLVKKGYVKKIQSENDKREVFLEVTDKFYNYYNVKNEYMNLVLKRARNRF SEEDLEKFEYMLSVISEDLMPEITEGMIRLKT >gi|289656138|gb|ADCS01000052.1| GENE 3 2460 - 2885 512 141 aa, chain - ## HITS:1 COG:BH3735 KEGG:ns NR:ns ## COG: BH3735 COG0764 # Protein_GI_number: 15616297 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases # Organism: Bacillus halodurans # 1 139 1 139 140 135 49.0 2e-32 MYNSNEISKILPHKFPFLLIDRIIEMEEGKYAKGIKNITVTDPVFQGHFPDEHVYPGVLI VEAMAQVGAFAILSEEKNIGKKAYFTKIKEVKFLKTVVPGDTLEITTTLISRRLNVGFAN CIACVNGEVVCRGEIAFALSL >gi|289656138|gb|ADCS01000052.1| GENE 4 2886 - 4121 1289 411 aa, chain - ## HITS:1 COG:CAC3573 KEGG:ns NR:ns ## COG: CAC3573 COG0304 # Protein_GI_number: 15896807 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: 3-oxoacyl-(acyl-carrier-protein) synthase # Organism: Clostridium acetobutylicum # 1 408 1 408 411 399 53.0 1e-111 MKRRVAVTGIGFISPIGNDEKTLTENLRKGKCAVDRITLCNTENLDVKIACECKDFNSED HFSKKDLKRMDRVNILGIVAARKAVEDSGIKLDDCDIDRVSIMVASGVGGLSTIERESFK AFEKGYSRVSPFFIPMIIANMTSAQIAIDLNVHGYVSCPVTACASSSTAILDAYRSIKDG YNDVVIAGGSEASINGLGIGGFNSMKALYAGEDINRASIPFDRCRSGFVMGEGAAILVLE ELKSAKKRGAKIYGEIVGSSMTCDAGHITSPNENGKFAALAMKNTVLENGNKLEDVDYIN AHGTSTPLNDKYETKAIKRVFGDNAYSLNVSSTKSMTGHLLGASGSLEAIITLIAIKNSF IPPTINFLEPDPECDLNITPNIAVNKKIKLAISNSLGFGGHNVSIAFKGCE >gi|289656138|gb|ADCS01000052.1| GENE 5 4118 - 4849 250 243 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 1 243 1 242 242 100 31 2e-20 MNNKTALITGATRGIGKRIAIEFADRGYNLIINYRDKESFELLEKEISDNCQLLGVRGDV SNFEDVSKIFDEGIKRFGTIDVLVNNAGITSDNLAIRMSNDEFDKVIDVNLKGCFYFMKL AAKHMLKNRNGRIISISSVVGLHGNAGQINYAASKAGLIGMTKTLALELASRNITVNAVA PGFIETEMTDKLSEDSRKLILDKVPLNRIGTTEDVAKAVIFLASDDARYITGQVLSVDGG MNI >gi|289656138|gb|ADCS01000052.1| GENE 6 4842 - 5822 851 326 aa, chain - ## HITS:1 COG:CAC3575 KEGG:ns NR:ns ## COG: CAC3575 COG0331 # Protein_GI_number: 15896809 # Func_class: I Lipid transport and metabolism # Function: (acyl-carrier-protein) S-malonyltransferase # Organism: Clostridium acetobutylicum # 21 320 3 306 308 188 40.0 1e-47 MCETKLSEKHKFDNENIRGRKIGYIYAGQGSQVPHMGLDFYNSSISAKKFYDSVDKSLDL KRLSFEADEDELVKTENTQVVLIGFQVMLTKLFNENNIVPNAVCGLSIGEYGALYCSGVL NEEDVLKISKFRGTEMSKCSEGINTEMYAIINSSEQYINAVLEIYNSTEKFVQISNINSK EQIVISGDKDVLEKVKLHLKKDGVRYIKLKVSGAFHTAYMDRAAESLEKYFKTIEFSEPK IPVYYNVTGSKEDEGNIKNLMVKQVKSTVRFEDDIKNMIEDGIDLFIEIGFNNIIKKIVR KINSNVQVISISSYEDFKDLVEKFYE >gi|289656138|gb|ADCS01000052.1| GENE 7 5804 - 6739 954 311 aa, chain - ## HITS:1 COG:CAC3576 KEGG:ns NR:ns ## COG: CAC3576 COG2070 # Protein_GI_number: 15896810 # Func_class: R General function prediction only # Function: Dioxygenases related to 2-nitropropane dioxygenase # Organism: Clostridium acetobutylicum # 5 306 8 309 310 303 50.0 3e-82 MKLQEMLNIKYPLIQGGMAHIATGKFAAAVSNSGGLGVIGSGGFTAKELRDEIETCLKLT DKPFGINILLLHREIEEISDIVCEYGIKILTTGAGNPGKYIDKWKAHNIKIFPVISSKAL AIRMEKLGVDGVIAEGQEAGGHIGELGTIVLVNEVANSLSIPVIAAGGIASGKQLLAVEA LGAVGAQIGTCLLPAIECPIHDDYKEKIINAKSSQVTVIGRINGLPVRLLKNEMTRKYIE CEKNGAELQELEQMTLGALRRAVKDGDMINGSIMCGQVVGEVNLRRKLVDILDGIYSEYL NAKEKLCAKQN >gi|289656138|gb|ADCS01000052.1| GENE 8 6736 - 7644 871 302 aa, chain - ## HITS:1 COG:FN0148 KEGG:ns NR:ns ## COG: FN0148 COG0332 # Protein_GI_number: 19703493 # Func_class: I Lipid transport and metabolism # Function: 3-oxoacyl-[acyl-carrier-protein] synthase III # Organism: Fusobacterium nucleatum # 11 299 12 325 328 190 38.0 3e-48 MGLKIVDAVSYVPDRTVDNSYFESYLDTTNEWIVQRTGIEKRHFSDLQVSEMVLNASKKL QIFNRESIKLVISATVTSDYVVPSLSALVHKELDLLEEVLSFDINMACTGFIGGLIVAES MLKVGEQAVIIGAEKLSNIVNFDDRATAMLFGDGAAVTIVEKTNEKFSKVSGTVPSFDLK FINDGKSKVTMEGRNVYKFATSVIPSGIDKLLSMNNINVCDIEHFVLHQANLRIIESIVK KTGYKEKFFTNIQNMGNTSSASIGLCLAEMKNKNILKNGDRALLFGFGGGLTYAGVIVEC GI >gi|289656138|gb|ADCS01000052.1| GENE 9 7629 - 8540 905 303 aa, chain - ## HITS:1 COG:CAC3568 KEGG:ns NR:ns ## COG: CAC3568 COG0825 # Protein_GI_number: 15896802 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA carboxylase alpha subunit # Organism: Clostridium acetobutylicum # 40 298 7 265 274 252 48.0 6e-67 MKIEEIFKEILDEEKLSKFKNSYEFKKYKESILNDAKEFLTPSDRVFLSRYKNRPKAKDF IENIIDDPIYFKGDRCFKEDSSIICGIGKLDDEVVTFIGINKGRDFEESIKCNFGMVNPE GYRKAVRIMKQAEKFKRPIICFVDTPGAYPGVGAEERGQAEAIAKSIYTMAGINTNTVSV ITGEGASGGAIALCVCDHLIMMENAIYSILSPEGFASILWRDSGKVDKAIEIMKLTSKDL YKFKICDEVIEENLAPTQEDFFENYSRLKNSIVDALKKLKNIPKDELLKNRREKYRSLEW GLK >gi|289656138|gb|ADCS01000052.1| GENE 10 8518 - 9399 717 293 aa, chain - ## HITS:1 COG:CAC3569 KEGG:ns NR:ns ## COG: CAC3569 COG0777 # Protein_GI_number: 15896803 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA carboxylase beta subunit # Organism: Clostridium acetobutylicum # 1 283 1 284 285 274 49.0 1e-73 MDYFKRKKDIFKKIKEIRDKRQNSEKKILEKSIVFSQCKNCESMIFEDELTKNMRVCPNC GYHLKISSKDRLKYLMDNYAFIEFKKYESDPLEFEGYEEKKKIMRDKTSLSEAVVVVKGT ISGNKCYVFLMDSDFFMGSMGVEVGERIAYCFELAAREQLPVVGFCASGGARMQEGIFSL MQMANTTFALRKHSEMGNLYISVLTDPTTGGVSASFASLADIIIAEPGARICFTGRRVIE ETIKQELPKDFQSAEFLIEHGFLDEIVDRREQKNYIGKILSYHRRKDEDRRDF >gi|289656138|gb|ADCS01000052.1| GENE 11 9399 - 10769 1462 456 aa, chain - ## HITS:1 COG:CAC3570 KEGG:ns NR:ns ## COG: CAC3570 COG0439 # Protein_GI_number: 15896804 # Func_class: I Lipid transport and metabolism # Function: Biotin carboxylase # Organism: Clostridium acetobutylicum # 1 445 1 445 447 495 57.0 1e-140 MLKKILVANRGEIALRIIRAAQELQIKTVAIYSVEDRESLHVKFADEAVCIGSVRSKDSY LNIDNIVMAAKATNCDGVHPGYGFLSENPNFVAKLEEGGLKFIGPSSEVIEIMGDKIRAR ELMLKNGISVVPGSDGEVDGVSDAIEIAKKIGYPILIKAAGGGGGKGMRKVYSESDIKVA FESAKSESIAAFNNGSMYIEKLIENPRHVEVQILADSFGNVVSLFERNCSIQRKNQKMIE EAPCFGIDNTIREKLYKESIKAAKACNYENAGTIEFVMDDENNFYFIEMNTRIQVEHPVT EMITGIDIVKEQLKIASKMKLNFNQSDIERNGYAIECRVNAESPFNKFLPQSGEVKFLYG PGGVNTRFDSHLYTGAKISPFYDSMIGKIIVHDKTRIGAIRKMRRAIEETIVVGIDTNLY LLYAILYNFDFIKGKYNTSFIERELDGLLKLMENYR >gi|289656138|gb|ADCS01000052.1| GENE 12 10763 - 11224 296 153 aa, chain - ## HITS:1 COG:VC0296 KEGG:ns NR:ns ## COG: VC0296 COG0511 # Protein_GI_number: 15640324 # Func_class: I Lipid transport and metabolism # Function: Biotin carboxyl carrier protein # Organism: Vibrio cholerae # 75 150 121 196 196 79 48.0 3e-15 MSADIIKILEKFSALNIDSMKYSNKEFNLELKKNNSCDSIENSEYSKEKLINECIENKII QENSETEKIKEDYLYKLKSPIVGIFYSKASPDSKAFVDVGAEVKKGDVLCIIEAMKMFNE IKSPVDGIIRKINFEDEQLIAFDDIIFEIEEKC >gi|289656138|gb|ADCS01000052.1| GENE 13 11221 - 11445 400 74 aa, chain - ## HITS:1 COG:aq_1717a KEGG:ns NR:ns ## COG: aq_1717a COG0236 # Protein_GI_number: 15606797 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl carrier protein # Organism: Aquifex aeolicus # 5 74 5 74 78 60 51.0 9e-10 MNNLDKIKNIVAENLGCSVEELDENTNLIEDLKADSLDIVELTMAIEEEFGISIKDEDIE KINTIGNILEYVEK >gi|289656138|gb|ADCS01000052.1| GENE 14 11601 - 13472 1192 623 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 [Rickettsia canadensis str. McKiel] # 21 620 6 595 636 463 45 1e-129 MFFDDENNNGKKNKDNKFIKRPMLIYYILAIVLIFTVPYVTRQRLQKNVKVTTTDYSTFL NYVESGKVTEAHVLDKKIRFDVKEPGKEIQKFETSTFNDLKLVDRLNENNVKFDKEYPNE LNPILMVLIQMGSTFITLLLVWYIFSRFILKRFGGEGGVGPMSFGKSNAKIYVQSTDGIR FNNVAGQDEAKEALTEIVDFLHNPKKYTKIGAKLPKGALLVGPPGTGKTLLAKAVAGEAD VPFFSISGSEFVEMFVGLGAAKVRDLFKQAHEKAPCIVFIDEIDTIGKRRDGAGISGNDE REQTLNQLLSEMDGFEGNDGVVILAATNRPESLDPALLRPGRFDRRIPVELPDLAGREAI LKVHSTKIIKDDNIDYTQVAKATAGASGADLANMINEAALRAVREGRDKMTQRDIEESVE VVLAGYERKNAVISPREKEIIAYHEVGHALVAAMQTNSAPVHKITIVPRTSGALGYTMQV DEEEKFLMSREELFNKIVTLTGGRSAEELIFSLRTSGASNDIEQATKIAKAMITRFGMSN EFGFVAMESVSNKYLGGDTSLSCSPDTESKIDLAVQQLIEKAHEKAINILKENIDALHEI AHFLLQRETITGEEFMEILNKYL >gi|289656138|gb|ADCS01000052.1| GENE 15 13588 - 14142 646 184 aa, chain + ## HITS:1 COG:no KEGG:Clos_2533 NR:ns ## KEGG: Clos_2533 # Name: not_defined # Def: hypothetical protein # Organism: A.oremlandii # Pathway: not_defined # 22 182 31 180 182 63 28.0 4e-09 MKKFTQNLIFIAIILLLLTSCGKSSINNSASEKEPVNETVYEISLYYPTKEFVVNGDENY KFASIRTTVNDIDEIKDELEKLKVSPKTATNSDGKETDVFAAIPKKITINNIELHESIFT VDLNSKNLEGGSLDEQILIGSIVNTLKSVKENNTPVSNSVKFTVDGKDVQTLMGHFDVTE PIEE >gi|289656138|gb|ADCS01000052.1| GENE 16 14317 - 14733 246 138 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148996730|ref|ZP_01824448.1| 30S ribosomal protein S9 [Streptococcus pneumoniae SP11-BS70] # 53 125 1 73 77 99 60 7e-20 MKNEIKHTAHSSYRCEYHIVFAPKFRRKVIYGELKKDIGVILRKLCNEMKVEIIEAEACP DHIHMLVSIPPYMSVAQFVGTLKSKSALIIFDRHANLKYKYRNRHFWCRGYFVDSVGKNE KKIQENIRNQLEEDYMKD >gi|289656138|gb|ADCS01000052.1| GENE 17 14908 - 16638 204 576 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 334 566 2 240 245 83 27 5e-15 MINTLKKIWEFAGEERKNISQSVFLGFVFAVFHMLQISAIYFVIDGLIKGEKSLKISFIA FMLLVISIIGRASINYFTQLKQTHAGYFMVANKRIEIGNRLKSVPMGYFNKTSIGEIIGI NTTVLDDVETLAPMILVAMLSGFINSVVFTIMILLFEWKIGILVVMGTAIYLVITSKMEK RSRTLLPKRQKAQAKLVEAVLEQIQGMHIIKAFNLTGKGDKKVRRALENSRSSNLSVERV FTPYIMAQSISLNIFSVLMIIVSVSMYLNGTMTLTNAIMCIIMSFMVFTQISSTGSSLAT FRIVSSSIEQAEKINEIPQMDIDGKEIIPESHDIEFRNVSFSYEKKKILDNISIKLPGKT MTAIVGPSGSGKTTMCNLIARFWDVDEGSITIGGRDIKEYTLESLMEQISMVFQNVYLFQ DTVENNIRFGKPDATHEQVIEAAKKACCHDFIMGLPNGYNTIIGEGGGSLSGGEKQRISI ARAILKDSPIIIFDEATANIDPENEHKLQSAIEELTKNKTIIMIAHRLKTVRNANQILVV NNGRIEEIGTHEELIKQDGIYSKFINSRKEAVGWKI >gi|289656138|gb|ADCS01000052.1| GENE 18 16641 - 18377 203 578 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 332 563 120 357 398 82 27 7e-15 MEKQNPLMRIWELAKEEHSGLIKSVIFAIIGVLGGMIPYFAVSKILINLLNGNTDNNLYI HWALISFLGYLIKVVFYVNALSISHKSTFSVLKNIRLKILDKLPKMPLGTILETSSGRMK QIIVDQVESTETTLAHLVPEMTSNILGPVCIIIYLFVLDWKMALLSIVSIPVGMSFMGLI MRNYTERYEGAVRTNAEMNSAIVEYVGGIEVIKAFNQGNKSYAKFAEKVNANAAYFYNWM KECQFYTSLAGAISPTTMITTLPIGWIFYIKGSISIEIFITTIILSLGVAGPIISAMMFF DNLAKVGTIVDSIDKILCGEEQIHNKESVKFDNMNIELKDVSFGYTEEKEVLHSVNMNIS ESTMNAFVGLSGSGKSTIAKLIAGYWDIKSGSIKIGGIELKEIPLNQLYDLVSFVSQDNF LFDESIRENIRMGNIDATDEEIEKVSKLSGCHDFIMNLEDGYDTVAGSSGSHISGGERQR IAIARAMLKNAPIVILDEATAYIDPENEAIVQKAVAKLISEKTVIVIAHRLSTTTNSDKI FLIKDGRVADRGTHEELLNNNLDYRDMWNAHIGARDGE >gi|289656138|gb|ADCS01000052.1| GENE 19 18423 - 19049 523 208 aa, chain - ## HITS:1 COG:no KEGG:Elen_1489 NR:ns ## KEGG: Elen_1489 # Name: not_defined # Def: transcriptional regulator, TetR family # Organism: E.lenta # Pathway: not_defined # 1 202 1 208 212 144 37.0 2e-33 MSNGNYEVTHKKILESAKRLFLKNGYERANLREICRGAEITTGAFYRHFEDKNALFSELV DPAINGIMKKYRIAERICFDYLSNEDLISMMKFGVDIAMVFIDYIYDNFDAFKLILMCSD GTKYVNFIDWLVEEEIRANKRMFLLFEEHNIVYKKISEKEMHMLVHSYFSCMFETIFHDY EREEAIECIRTITKFYSAGWKELLEISM >gi|289656138|gb|ADCS01000052.1| GENE 20 19316 - 19729 405 137 aa, chain - ## HITS:1 COG:no KEGG:FMG_1493 NR:ns ## KEGG: FMG_1493 # Name: not_defined # Def: hypothetical protein # Organism: F.magna # Pathway: not_defined # 3 137 8 138 138 64 29.0 1e-09 MGSKLNLLEIVGLVAIICGFIYILYINGYAVFSAKKALMFVGTMGYFTNRCKVRFYACTG FVKRVLKFKESREYEFRYDGKLKNGIAYIEVQDRNGKVLFTIDEGNKIVSYNFERKERYY LVMKFKNANGKHELTWK >gi|289656138|gb|ADCS01000052.1| GENE 21 19756 - 20079 265 107 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|299144257|ref|ZP_07037337.1| ## NR: gi|299144257|ref|ZP_07037337.1| putative arginine/lysine decarboxylase [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 107 5 111 111 185 100.0 1e-45 MKRILFIFLILFVINFGVFKIITKSNSSIPPKSDIVEIYNDNGKESALEKLEGVSQENLI EAWGKPDGSLFGMYGDIWEYENKIIIIYYKDVDEEVIIDVIVDNKQI >gi|289656138|gb|ADCS01000052.1| GENE 22 20107 - 20976 921 289 aa, chain - ## HITS:1 COG:no KEGG:Apar_1268 NR:ns ## KEGG: Apar_1268 # Name: not_defined # Def: beta-lactamase domain protein # Organism: A.parvulum # Pathway: not_defined # 1 276 1 276 288 403 69.0 1e-111 MSKQASKIQEKVMSFMYRGKGIFKPLNTGSIDENVKCIREFVANIFFYTKKDTTIMIDAG YNYERLLEKMKWIDIDPNTIKHILITHQDTDHIGAVERDSSQLFKDATLYIGEIENKYLT GEKKRKVLYGLGTLPRVFIDNKKILLKDGDVFFIDEIKIESILVAGHTWGHLVYLIDDKY LFTGDTIWFGVDGGYSFINSLAESNSLAKESLKNLEEQLRNRKLNPIVITGHTGWADSID FTFAHRDEVCNSMKKQKPYDPRAPYDAYDESDDTEERCRANKLKKANEE >gi|289656138|gb|ADCS01000052.1| GENE 23 20989 - 21438 314 149 aa, chain - ## HITS:1 COG:MA0361 KEGG:ns NR:ns ## COG: MA0361 COG0716 # Protein_GI_number: 20089258 # Func_class: C Energy production and conversion # Function: Flavodoxins # Organism: Methanosarcina acetivorans str.C2A # 1 141 1 142 159 112 41.0 3e-25 MKTVIVYYSKHHNNTKKVIDVIAKLENVKLIDAGIIKEKDLSEYDLICFASGIFYSNFHK CVIEFAKKNLPENKKVFFIYTCGIKRANYTDKIKQIVIEKNSKVLGEYACLGFDTFGPLK LIGGIAKGHPNEEEINGAVEFYSNIINKI >gi|289656138|gb|ADCS01000052.1| GENE 24 21535 - 22167 712 210 aa, chain - ## HITS:1 COG:no KEGG:Apre_0710 NR:ns ## KEGG: Apre_0710 # Name: not_defined # Def: hypothetical protein # Organism: A.prevotii # Pathway: not_defined # 1 206 1 205 212 204 54.0 2e-51 MTLLQITLLAGLLGAILMFLGDMTLYYDKNDYSSDDGLSSIIGIMKNVSRKRLYIGGMLG PISAFLYCVGFYHIVLFIDERYFILGWTGFLVSCLGIICGGVYHSHCANLGLIGRHDNKD TLDEVFDFLKFQRRIVFVFCSIGYIIVTVIIFLDLTELPRWMFIFSQTVLIMFIPFLRKL PKGFHMILCGGWTNLVSVIYYVAVLIALYR >gi|289656138|gb|ADCS01000052.1| GENE 25 22401 - 24749 2925 782 aa, chain - ## HITS:1 COG:no KEGG:Apre_1818 NR:ns ## KEGG: Apre_1818 # Name: not_defined # Def: copper amine oxidase domain protein # Organism: A.prevotii # Pathway: not_defined # 662 781 398 525 527 105 46.0 8e-21 MLKKKRYLSIIMALVMVIAILPMNVFANEVNEPVEQTPETTEIVSEDKTPVVTEGENDEN DPLDVTEEEANPETLSDRGATVTGVAIISKPDKTVYTVGEALELAGLKVRLTYSDNHTDD VAFADFAGHAPVITTSPADGTIVNTPSIITVTVTCNLQTATFQVTVKAPAPATVTGIAKK TDPDKTVYTKGEVLDLTGLEATLTYSNGDTEDVDSAVFASHNPVITTSPAPGSVLNTVGN QDVTVACNGKTFNFQVTVNAPVPGTVTGIAIKTNPTKMVYNVGDKLKLNGLEVTLTKEGQ PAEDVAFADFAAHAPVITTEPADDTVLDTAGIKTVKVKCNGFVATFNVEVKALVTPRVLS ADVYYDKVKGTAQPVGATVKLYKNGVVLGSGIVDSLGNYSIAYNFGYYNGYYGGYYGYYG NVINPTNVGHTSLSGYTTANTHVVAYDGNGNYLGSTTSSSTGYYYISYSYVSNYNAITVY KGYYDGYYGGYYGYYGKYSDKYYGYYYDLSDYYLQAEKDGEASEKFWLNNAYAHNYWNGY WNGYYPGYWNGYYSNAKYATVTDAKAGNSYVKGYGVNPYATVTVKDSLGYNLGSSTADGN GYFTTYTNRALKYGETLTIITSINNYKDVSTTYVVGGSTSSYSYNYKNEFVIGSGKLVKT VDGITTIQYMDVAPYIKDGRTMLPLRYVAESLGYTVSWNASTRIATFTDGTHIILVSIDS SKFYIDGKAYNFSVKPEIKNGRTMLPISEVGKALGLSHGNKGEGKNIEWDAATQTVVIQK NK >gi|289656138|gb|ADCS01000052.1| GENE 26 25004 - 25477 644 157 aa, chain - ## HITS:1 COG:BS_yqeE_1 KEGG:ns NR:ns ## COG: BS_yqeE_1 COG5632 # Protein_GI_number: 16079624 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: N-acetylmuramoyl-L-alanine amidase # Organism: Bacillus subtilis # 22 150 25 150 182 95 42.0 2e-20 MIVDKRPIKYNFSSRSMTKIIYIVVHDTGNSNKGANAINHYRYFNGGNRNASAHFFVDEN GVVETVEISKAAWHCGDGHGRYGITNNNSIGIELCVNEGSDFEKTKANAIKLIRFLMESY GITKNNVVRHFDASRKLCPRSMSADNWKQWWIFKEMI >gi|289656138|gb|ADCS01000052.1| GENE 27 25474 - 26031 611 185 aa, chain - ## HITS:1 COG:no KEGG:Clos_2530 NR:ns ## KEGG: Clos_2530 # Name: not_defined # Def: ECF subfamily RNA polymerase sigma-24 factor # Organism: A.oremlandii # Pathway: not_defined # 3 184 2 186 190 72 29.0 1e-11 MNYKEIDDLYVLAKANDENAKVLLLKRLDPLIKSSIKKYCPMWNFYDDLYNDGIVIILEL IVSFNSSKGSFLNYVKNYLKYFYLDTFKYLVKDERNIGSLDDETVKIFEFLESDFNLEES ILCSDEVLKLRSAFSVLTKRQRDVLIMFYFYNMSISDIANKLRIKYRTVVNTKTRAIEIL REVLR >gi|289656138|gb|ADCS01000052.1| GENE 28 26868 - 28175 1322 435 aa, chain + ## HITS:1 COG:CC3414 KEGG:ns NR:ns ## COG: CC3414 COG3572 # Protein_GI_number: 16127644 # Func_class: H Coenzyme transport and metabolism # Function: Gamma-glutamylcysteine synthetase # Organism: Caulobacter vibrioides # 15 389 20 400 453 180 29.0 5e-45 MNYNYNEQVERIINYIKDGEKPKNLFKIGVEFEHFVIDKNTLNTISYYGENGVGSTIKEL CNFFNAVPIMDGDFILGFETDDYSVSTEPGAQFELSVVAQKSVTDLERKYKNFMQIALPF FEKKGQFLLALGYHPKTKIDEIKILPKKRYDYMFNYFKSKGNMAHNMMKGTASVQVSIDF ENEYDFKKKYFLANAISPILYTIFDNSPIFENKPYKKHNLRQTIWENTDPDRSGTLKIAF DDNFSYKKYAEFILNTTPIFIDKNKKLQDVNELPFKSIFDPKKDNDDLIYHALSIVFPDI RAKKYLEFRMMDAVKMPYNFGAAALIEGLFYNKNNLERLYEMYREVKYEDVINAKKSSAE KGLLGIFLNKTIFEHATVLLNIAHDGLSDIDRNYLMPLFELLNSNSVPKNEFEKTAEKYG LKEAVFKNKIEVENV >gi|289656138|gb|ADCS01000052.1| GENE 29 28168 - 29487 1299 439 aa, chain + ## HITS:1 COG:no KEGG:FMG_1567 NR:ns ## KEGG: FMG_1567 # Name: not_defined # Def: hypothetical protein # Organism: F.magna # Pathway: not_defined # 1 435 1 434 436 442 53.0 1e-122 MYNSKFVDKYIEIIKSDEEKYYNDFLKFKNSVANSSAIYKNKPVPTTYQGLFYSQEDRKN FENMSSILMSITRKVTDEYLINSEYRKLFEFSEELENLILHNPIYDVPVPIARYDVFYNG KENFKFCEFNTDGSSAMNEDNTIGELLLNTLAMKEFKKYYNVKNVDLFTPWVKESIGIYE KIYNKKPNIAIVDLLDIGTPHEFKKFKEKYNELGYNCEIIDIRDLKYKDGKLKKDDYTVD LVYRRIVTIEFMKHYNEFKDFIKAYYDNAFMMLGSFRSQLMHTKLIFKILREPATTKFLS DSENEFIKEHIPLTISLTEDTIDELVKNKNSYILKPIDDYASHGVYCGKDHCIEKWKEIS QNALQKKYIYQEYYKMQPLQFVEFSKDGKLEINNFSAVLGMFIYNEKFIAPYTRIGKENT IGGNSSYYTAPNLLIEYLT >gi|289656138|gb|ADCS01000052.1| GENE 30 29661 - 32366 3529 901 aa, chain - ## HITS:1 COG:SPy0623 KEGG:ns NR:ns ## COG: SPy0623 COG0474 # Protein_GI_number: 15674699 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Streptococcus pyogenes M1 GAS # 3 894 10 883 893 688 43.0 0 MQWYNKLSEEVFEELDTSEEGLSEEQVLERFIEFGKNELEKEEKKPFIKKLADQFLDPMI IILICAGLVSAYFKEVVDSIIIVAIVVVNATLSIYQEGKAEEAIAALQKMSSPKAKVVRN GKSIEVDSAELVPGDYVILETGDIVPADLRLVDSKNLKIDESSLTGESVPVEKNAKEIYK SKMEIGDRTNMAYSSTIVSYGRGAGVVVETGIKTEIGQIATSIQTVDREQTPLQKKLAGL SKTLGILVVAICILVLLVGLLYNHDFLTMFMTSISLAVAAVPEGLPAIVTIVLSIGMGKM AEKNAIVKKLLAVETLGTTTVICSDKTGTLTQNEMTVVKAFIDSKTIEIAGTGYLPKGEI TYSGQNILLDDFKDLKLLATIAALTNDARLNITENDEASIIGDPTEGALLTFAEKVGYSV DELNNKYSRDAEIPFDSDRKMMSTIHSGYTENKAISFTKGAPDIVLSNCNYYLDNGEIKE LTNEARDTIMSANSRFARSALRVLAYAYREFDQIPSVLTSENVEREMIFVGLTGMIDPAR PEVIQAISECKDAGIIPVMITGDYLETGLAIAIELGIAKDKTQAIMGRELNDMTDEQIRE IVKEKRVFTRVSPENKVQIVRALKENGHIAAMTGDGVNDAPAIKRADIGIAMGITGTDVA KNTADVILTDDNFATIVNAVEEGRIIYSNIKKFVGFLLSCNIGEVLIVLISIILNLPVPL IPIQLLWLNLVTDSFPALALGVENADAKIMQEPPRDPNESILDKELKITVLVQSIAITIS TLGAYMIGLKWFGKEGIGLEYARTMAFATLILSELLRSYSARSIKNTLLSIGIFSNRKLV SATAFSLMLMLLVMYIPGIRELFKLESIGIREWVVVLVASVIPLILGEIQKALRFESKKS F >gi|289656138|gb|ADCS01000052.1| GENE 31 32548 - 33834 1379 428 aa, chain - ## HITS:1 COG:PH0710 KEGG:ns NR:ns ## COG: PH0710 COG0172 # Protein_GI_number: 14590588 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Seryl-tRNA synthetase # Organism: Pyrococcus horikoshii # 1 428 6 453 460 313 39.0 3e-85 MLDIKFLRANPEVVKENIKKKFQDEKLPLVDEVIELDEQLRAVKTKGDELRSRRNYVSKE IGAFMQKKEIEKANEAKIEVKNINDELEKLEAEEKELDRELTQRMMIIPQIIDKSVPIGK DDSENVEIEKFGEPVVPEYEVPYHIDIMEKFDGVDLDAARRTSGNGFYYLRGDIARLHSA ILSYARDFMIDRGFTYYIPPFMIRSDVVTGVMSFAEMENMMYKIEGEDLYLIGTSEHSMI GKFINTITPENDMPLTMTSYSPCFRKEVGAHGIEERGVYRIHQFEKQEMVVICKPEDSPY WFDQLWKNTVDFFRSLEIPVRTLECCSGDLADLKVKSLDVEAWSPRQKKYFEVGSCSNLG DAQARRLNIKLKGEDGNYLAHTLNNTVVAPPRMLIAFLENLLQEDGSIRIPEPLQPYMGG KEKIEIKK >gi|289656138|gb|ADCS01000052.1| GENE 32 34145 - 35092 598 315 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 [Streptococcus pneumoniae SP6-BS73] # 2 302 1 303 306 234 43 1e-60 MIYDLIVLGAGPAGLTAGLYGARAKLNTLVIEKAVEGGQISSTTDVENYPGSLMVSGLEL AITIKSQAENFGTEFVMDEVIDVELEGKVKKVICKENVYEAKVIIIATGAHPRKIGCVGE DEFIGRGVSYCATCDAAFYQDLDVYVVGGGDSAVDEALFISKFAKNVYIIHRRDELRASK SLQDRAFKNKKIHFIWNSAIEEIKGDKIVNEISIKNLKTGEITNISKKEPFGIFVFIGYV PATKVFEGKLDMEDGYILTDNNMKTSVEGVFAAGDLRVKEVRQVVTATSDGAIAAVVAEK YIAEQEGTLYEGFKN >gi|289656138|gb|ADCS01000052.1| GENE 33 35200 - 36864 1323 554 aa, chain + ## HITS:1 COG:FN1127 KEGG:ns NR:ns ## COG: FN1127 COG4907 # Protein_GI_number: 19704462 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Fusobacterium nucleatum # 30 505 28 530 606 71 21.0 5e-12 MKKLFLLLTLLLLIIPQNIFADSSTTIQKFDSKVVVEKNGDLKITETVNYKSSKNMNGIY RNIVIKNSDSIENLIIKSDYKKFSPTDKAKNGDSYVYTVTKSDNSAKIKAYIPWTGSINL TFEYTLKNGAILGTDSGIIAYTFLSDIDTKIESFVGTIEVPKLDKFMNYYTENKLNIDEG NGTLTISSDNINSSSISIAASFPKEFISESTNIKNVSSENLDEFFENFPINKDIAKVLSS ILIIPSFIFMIVIFIFYSKKDENEKQPIGKFLKLSPSEASVFIIGNYLPSVILATIFDFE KRDFLKINVENYTTKKDKQKENYIFVKTNSPTNLSEDEKYLYDLIFSYGDGKTVSTNQLN SARKSSSMTFMRDFNKYYELVKDELYKKGVIYKKPKYLVISITAMLFSLFAFVMSILLLI SKSILAILILPISIIIFILSIMLITKKTPLGDEQYKLYTTLYSELKKVSNFEYKSNDDKQ TLLLYAIAFGLKEKALNNLKENLDINSDIFIPIFWNYPMMSTFNYSLIGSTSTSTYYGTS SSGGSTGGGSTGGF >gi|289656138|gb|ADCS01000052.1| GENE 34 36968 - 37543 654 191 aa, chain + ## HITS:1 COG:SPy1204_1 KEGG:ns NR:ns ## COG: SPy1204_1 COG0518 # Protein_GI_number: 15675169 # Func_class: F Nucleotide transport and metabolism # Function: GMP synthase - Glutamine amidotransferase domain # Organism: Streptococcus pyogenes M1 GAS # 1 183 10 195 205 124 38.0 1e-28 MKKILIVDFGYSYPEKIKEKIEEFADVYITDNNSAYERAVMLDVDGIILGGGISNIKADD ASWIDEKIFKLNIPILGICSGMEIIAIVFGGNVGKEKYPFEKGETVTYLDSTSDLFKNLP HLQNTHMFHGYSVESLPVGFKNIGYTDTSPIAAFEFKSKNIYGVIFHPEGKYSAYGKIIL NNFIKIIESQC >gi|289656138|gb|ADCS01000052.1| GENE 35 37534 - 38718 1349 394 aa, chain - ## HITS:1 COG:BB0359 KEGG:ns NR:ns ## COG: BB0359 COG0793 # Protein_GI_number: 15594704 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic protease # Organism: Borrelia burgdorferi # 1 358 1 379 475 232 36.0 1e-60 MKKKMIKILAVILLLIGTNFLTYNAAIYGYGNASSTKYARIKFLEDYVKKNFLYPVTDED FEIGELKGVIAGLNDPYSEYMTKEEYDKLMETTSGKFYGIGVVITKGEDNLITVISPIKG SPADKAGVKAQDKIIKVEGVEYTAEKMNDAIAVMKGKKGTKVNITVYTPSTSETRDLSME RDEVKMETIISKKINNIGYIAITQFDETTYPDFKEALNKLEREDVKGLVIDLRGNPGGVV DAAANIADELLPEGMIVYAKDKNEKTVFEFKSDSNQTELPITVLINKGSASASEILAGAL HDHKRATIIGTTSFGKGIVQSAARFPKGDGIKLTTSQYFTPNGVCIHKIGIKPDIEIEIE KDAKGIGVEYLDTDTQLKKAIEVLNESINKESQH >gi|289656138|gb|ADCS01000052.1| GENE 36 38732 - 39925 1321 397 aa, chain - ## HITS:1 COG:TM0409 KEGG:ns NR:ns ## COG: TM0409 COG0739 # Protein_GI_number: 15643175 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane proteins related to metalloendopeptidases # Organism: Thermotoga maritima # 275 397 134 254 271 126 51.0 6e-29 MKKKKSFILFLVIALVFSQPVFASSSTQLQKQKQKVEKKKEDATKKMEKTKDKLKNKQED VDTVQAQISALDRKIDGLTSNINQLENKINSLNSEIIKNQELLDKTIKDLEEKQKLFGQR VRAMYMNGNVNYIEVILNSRSMEDLIRNNEIITSIANYDKKLVDYISEQAELIKKTRAKL ESDRNEVTLSKAKLEQEKVGFVAANNEKQSYMNVLQKDLEAYRKEYEKAQENWSKLDGEI VRLQKEIAAAKKREEDIAKTGNINIKIRPGAKVGWPVPGHNSISSPYGMRFHPILKISRF HSGVDIPAPNGTPVVAARAGTVIMARAMSGYGNVVMVDHGDIVTVYAHNSSIKVKVGQSV SQGDIVALVGSTGLSTGPHLHFEVRINGQTVDPMGYL >gi|289656138|gb|ADCS01000052.1| GENE 37 39941 - 40840 992 299 aa, chain - ## HITS:1 COG:CAC0498 KEGG:ns NR:ns ## COG: CAC0498 COG2177 # Protein_GI_number: 15893789 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division protein # Organism: Clostridium acetobutylicum # 13 299 12 301 301 142 33.0 8e-34 MRAIRRFLNILKESIKGISRNFAMSIASIVSIAAMLTLFGFIFILILNINSSVYHLGHKL DKVIVYLKEDIEPSTVNKLIDQIGNDDRVMQVQYTSKEQALEDFKERFGDKKYILDSIPE NTLPASLVISLKDLSYSKDVVNTIKTNKFIERVDYHYDLIEKMMTFEKGVKYIGSAVVIA LIFVAVLIIHNTIKIAVANRKREIYIMKYVGATNFYIRGPFLIEGIIFGIIGALIALLIV YFAYEYSYIRVNQYIENLFGTSIATPQSISKNISIIFLCIGVGIGYLGSLMSTKRFLDV >gi|289656138|gb|ADCS01000052.1| GENE 38 40837 - 41514 339 225 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 197 4 201 223 135 34 1e-30 MIVFENVYKEYSNGVMALSNINMNIPDGDFLFLVGSSGAGKSSMIKLLIREEEVTRGKIL IDDTDITKLRKKKIPKLRRDISVVFQDFRLLDKKTIFENVAYALEIQGASKSEIKKSVAQ ALDLVSLTGKENCYPKELSGGESQRVSIARAIVNKAPILVCDEPTGNLDQETAWEIMNAL TKINEQGTTIIMATHAVDIVDKMQRHVITLSDGHIVKDIERGGYL >gi|289656138|gb|ADCS01000052.1| GENE 39 41691 - 42266 781 191 aa, chain + ## HITS:1 COG:CAC1090 KEGG:ns NR:ns ## COG: CAC1090 COG0212 # Protein_GI_number: 15894375 # Func_class: H Coenzyme transport and metabolism # Function: 5-formyltetrahydrofolate cyclo-ligase # Organism: Clostridium acetobutylicum # 2 177 4 177 182 115 43.0 4e-26 MNKIEFRKLMSKKRNELSEDYIENSSEKIYENFINSDIYKKSNHIFIFVSYKKEVNTHKI IKKALKDEKNVYIPVIDRNTMTMNVSCLRDFDSLKENYMGILEPTEKDLNFVDPKIIDLV IVPGLAFDKNGYRIGYGGGFYDKFFATIETKPIKLGIGYSMQFVDEVIHDDFDKALDYFL SENQIYKLGGF >gi|289656138|gb|ADCS01000052.1| GENE 40 42266 - 43447 1370 393 aa, chain + ## HITS:1 COG:no KEGG:CTC01949 NR:ns ## KEGG: CTC01949 # Name: not_defined # Def: hypothetical protein # Organism: C.tetani # Pathway: not_defined # 1 392 1 392 393 497 61.0 1e-139 MERYVGTVVRGIRTPIVKNGDDLIEIVYESVINAVKSENIEIKDKDVVAVTESLVARSQG NYATTDQIAKDISEKFPNEIGVVFPILSRNRFSVLLRGIAKSGRKLHILFSYPSDEVGNH LMDEKLLYEKNINPYTDILEENEYRKIFGEEVKHKFTGIDYVKLYKEIAPNSEIHFSNDP KAILKYTKDVLVCSIHTRDFVKQELKDAGASIVYGLDDILSGPIDGSGYNEDFGLLGSNL SNDERVKLFPRDCQTFVDELQEKLCKYSNRQVEVMVYGDGAFKDPVGKIWELADPVVSPA HTKGLSGTPNELKIKYIADTELSSLSEKDAENILKEKINNKDADLTGKNETLGTTPRRIT DLLGSLADLTSGSGDKGTPVVYIQGYFDNFASK >gi|289656138|gb|ADCS01000052.1| GENE 41 43514 - 44596 1117 360 aa, chain - ## HITS:1 COG:no KEGG:CPE0251 NR:ns ## KEGG: CPE0251 # Name: not_defined # Def: hypothetical protein # Organism: C.perfringens # Pathway: not_defined # 2 359 52 432 440 180 34.0 7e-44 MLDKSGWTEKNYNHLKKLIEENKSCNFTNKYNRNYAVSDWDNTSAMFDVEEAVFLYQLFN LKFSMTRDEFEYVLRKDIEIEINSFIDNLIIKIVEYYDDLIEMKSKIELSEIKSTVSYKN FVNMMAYLFKEFAQTLEYGTACYKILYLFFNMSEEDVRDITRKALEFWSEKALQIMNFEI ELAGERKLLSYKVGIRAIKQQVDLYRELRENNIDVYICSASSQIVVEEFAISKKFGYGFK IGEIVGLELEKDKNGKFLPITKENSLRTYMKGKAEYLDILKSKYNKAPILFMGDSNGDYD ALRYGELKVGLIINIKKNGKINELKKLAYDNCEDGTIYLLQGRDETTGEFISSQDSISLN >gi|289656138|gb|ADCS01000052.1| GENE 42 44659 - 46161 1363 500 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|299144276|ref|ZP_07037356.1| ## NR: gi|299144276|ref|ZP_07037356.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 500 1 500 500 904 100.0 0 MKCKFKILAILCLVIALNISACGKASNDVQNEEKNKTENAQTNAKAEEENSKEENAKEED KVEENIKIDKDIAEFTSKYLDFYNQDGNAYVEISFEEKNFVPEKVWKKVEFIETYNKDDV LEKKPKFYKMLISCNNNVLFDVVSERYSGAEKSLGKFKLNKGEAFIMPIYDRENSSCFIR ANKFPDLYVDNFADMPTYFGYETEFTKEISFNAFKWKKMLKPDLLANGYSYESTSKKQGN VDLDGDKKLETIYFVSDGWADSLNEDGEMEYAKFEGRFEIDEKDFDLTKIIKDEVYGKGM DENDTIYDLEVIDIDPNDNYKELALIISRETGNDILMFHYKNGELKFIGGAYQVIYDRAS ICTSEKEHIFATRAYEHMFFPYVRDIKYELKDEKFVELEFDTNEMFDFDSRITVYPTKVI NIYKTPTDTKPIGSVNKDDVLLLLETDGKLWIKVKVFESGETGYVRLEHGNKKSKFENSL YDQPEVDAETMFEGTPAYGR >gi|289656138|gb|ADCS01000052.1| GENE 43 46381 - 47712 1107 443 aa, chain + ## HITS:1 COG:CAC1768 KEGG:ns NR:ns ## COG: CAC1768 COG3735 # Protein_GI_number: 15895045 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 161 440 22 298 299 75 25.0 3e-13 MKKTQKFITLLIFILFFNITNSFAKENQPVKFSSWATLALDNAAKAGIYSPDYMTSGKDF TKEITQKEIEELDKNTRMKLSTYKLEKNPVFKTINVEKNSSRKNILYNIFNLMSLYDKDI NNNTDVIKYLTENKILIGDGKNLELDKKANYEQAIVFYNRALENIINKNNLGSKGIFFKI ENNGNTVYLFGSIHVGNSSMYPIDSNVIDAFNSSNELYVEANISNAEFIKYIQSKMIRTD GKTVKDDLGEENYSKLKNYMDDYKIPENNYANLNIWSLNSLITSLPIQSKNPYASAFGID AYFISKANTMGKTIKELESTKFQIDLLSDFSPEKYKQMIIGFLDSPESKSTEKFLEPISK MQSLWIEGNRESLSKMIVKQDDFTITLFKDRDVMMADKISEMLNSKDKKIYFVVAGAGHF APDDSVVKYLKDKNFKVENLNIN >gi|289656138|gb|ADCS01000052.1| GENE 44 47823 - 48842 831 339 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|299144278|ref|ZP_07037358.1| ## NR: gi|299144278|ref|ZP_07037358.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 339 1 339 339 603 100.0 1e-171 MSKKLKNVILFGIFILILFVSTITKQFSSSVLWTQPDNKGTEFSGLLFKNPTEISNLTVA RNVEKTDSGDLIRYDVEFEYQGDNSSLRILGVPVRQIFFNAGVVPSHSEVVLKGDYDKIN EKLFNEKLSLKDSYKKTQNYEFKPVSQIRVPLKKIEGTYSFSIFYEPKELVYKGKDVLSK TSVFITNAKVDKFTNAQKMGENENPTFSDSGYYVNAQEMKNNSVISRISLVNNLSYVIFI VSFIITLAVIWLDKKSLNNIYIITFMLILLTFYRFLGMGVTILGALVIMPILAYIGVCIT KLMNKDTTKLSKKELKQSLAYTILFFIIVLLVIVIPKAM >gi|289656138|gb|ADCS01000052.1| GENE 45 49336 - 50181 730 281 aa, chain + ## HITS:1 COG:no KEGG:SSA_1454 NR:ns ## KEGG: SSA_1454 # Name: not_defined # Def: hypothetical protein # Organism: S.sanguinis # Pathway: not_defined # 1 281 1 281 281 376 69.0 1e-103 MKKYNKIIKLFICAALVFGITACNNSQKNSKVNHDVSTYSNLISKNSIEEVKSLLSAQLD KDSVEDFIKQVNEYNEIASSTGLKGDFTEFKTPQYDVDKISTLWREKKGDFIGTNCRINS YMLLKKNIEIPQIDKDDKLLFLDDDAIDKGNLFSAEEKEKFKILFSSVKTEATQDIRIHA ENMEKYFENIKFNENARMLSVIIHDNLDGEYLFVGHVGVLVPNKDGFLFVEKISFEEPYQ AIKFVTKEDCYKYLQDKYADYTGEGLAKPFIMDNDKMVEVK >gi|289656138|gb|ADCS01000052.1| GENE 46 50641 - 52146 1846 501 aa, chain + ## HITS:1 COG:SPy0713 KEGG:ns NR:ns ## COG: SPy0713 COG4690 # Protein_GI_number: 15674771 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidase # Organism: Streptococcus pyogenes M1 GAS # 2 500 9 472 472 524 51.0 1e-148 MACTTILVGKKASYDGSTLVARNEDSGAGEFTPKKFIVVHPNEQPIKYKAVISHVEIELP DNPMKYTSMPDALNDNGIWGACGVNELNISMTATETITSNERVLGADPLVELIPAIGTEG SDNYVPEKVGGIGEEDMVTLVLPYIHSAREGVVRLGEILEKYGTYEMNAIAFQDVNEIWW LETIGGHHWIARRVPDDCYVVMPNQLGLDYFDLNDALGEQKEYMCSSDMREFIEDNHLNL SFDDEFNARLAFGSRSDADHSYNTPRAWVVQRYFNPNSNCWEGSDADFKPVSNDIPWCRQ PEWKITVEDIKYVLSNHYQGTPYDPYAKYGDLSLRGAFRPIGVNRTNFLALVQIRPYMPE AIRSIEWIAFGSNVFNAFVPFYVNIDKTPDYFANATKTVNTDSFYWANRLIGALADSQFS LCGSHIERYQDSVQSKGRKLLCKYDTEICKKEMTDEEIKKLCEKANEEISTMAKNETNDT LGKVLYEVSCQMKNGYSRSDA >gi|289656138|gb|ADCS01000052.1| GENE 47 52267 - 53061 861 264 aa, chain - ## HITS:1 COG:MT0861 KEGG:ns NR:ns ## COG: MT0861 COG0500 # Protein_GI_number: 15840253 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Mycobacterium tuberculosis CDC1551 # 101 208 44 144 270 62 34.0 6e-10 MNKPDYKNWVPEWLILALGAAAVVCGILFYIFGYVFENLSGGIKIALMCISGVGFIFFAG MCIFMTMLYRAFSYKGDRKMSKQIIEGIAEYVTIPDGGKGLDVGCGSGALTIACAKRNLN SKMVGLDRWGKEYKNYSRALCRKNAEAEGINNVEFVKGDALKLDFPDETFDVVTSNYVYH NIKGYSHQELLKETLRVLKKGGTFAIHDIMSKMIYGDMNKFMEELKREGYERVELIDTTN GMFMSPKESKLYLLSGSSLLIGKK >gi|289656138|gb|ADCS01000052.1| GENE 48 53386 - 53940 453 184 aa, chain - ## HITS:1 COG:no KEGG:Arch_1039 NR:ns ## KEGG: Arch_1039 # Name: not_defined # Def: hypothetical protein # Organism: A.haemolyticum # Pathway: not_defined # 1 184 1 184 187 215 60.0 7e-55 MYILELNQEGMGIEIGLFDTIEQGREFISKLEGYKCEEEDGFIYESIQLDKIPDYLELEF NNHIIPFTKFMFIGNGRIDIIWKEISNLSTEGNGIVPGCTRVDAYSIENNDLKEYIEKRE RKYEIVKQYLEKNNFEVSREYFGSEDGEAILYRKKNTKNWHFLTHMDPNFCEISDVRCFL DIVE >gi|289656138|gb|ADCS01000052.1| GENE 49 53975 - 55267 717 430 aa, chain - ## HITS:1 COG:SP0604 KEGG:ns NR:ns ## COG: SP0604 COG0642 # Protein_GI_number: 15900512 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Streptococcus pneumoniae TIGR4 # 1 428 10 436 442 335 43.0 8e-92 MFIQIFSVLGIIIILVHSLVFFIFPKTYLETRKEEIYNKANEISANMNGKEIKYIEQTLE FYSKGSEIKAFIKDKNSNNEIQIEDNVNVNLESDNNSLIIEEREIELNTGKKIYLQFIST ADMQQDAKDLSFKFLPYSLLISLLFSVVVSLMYAKSIKNNIQEIKSVTDKMMKLDKNVYL KVDSKNEVGQLKEQINDLYFTLLSSIDDLEFKNKEILKLEKLKYDFLKGASHELKTPLAS LKIILENMKYNIGKYKDRDVYINECIDIVDGLTQNISQILSVSSLEHLKNDEELLSINDI LAGVLKKYEVLTNQKNLKINNSISNEKIYIGKTALKIILSNLISNAIKYTDDYGTINIGV DKEWFYIENSCENKKSVDADKLSEVKFDLNKENSNGLGLYIVSNLLNNYKIKYRVLQNEV CFVFKIELSV >gi|289656138|gb|ADCS01000052.1| GENE 50 55291 - 55944 717 217 aa, chain - ## HITS:1 COG:SP0603 KEGG:ns NR:ns ## COG: SP0603 COG0745 # Protein_GI_number: 15900511 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Streptococcus pneumoniae TIGR4 # 1 217 1 218 218 269 64.0 3e-72 MRILVVEDDQMIREGISAYLSEFGYITIEAKDGREALSKFNNDINLVILDIQIPFINGLE VLREIRKKSKLPILILTAFSDEEYKIDAFTNLADGYIEKPFSLPVLKARVDSLIKKNFGL IEKFEYKNIEVNFTSYTAKINGESIDINAKELEILKYLLDNEGQALTRMQIIDNVWKETE EIPYDRVIDVYIKELRKKLGLDCITTIRNVGYKLERE >gi|289656138|gb|ADCS01000052.1| GENE 51 56101 - 57477 1242 458 aa, chain - ## HITS:1 COG:SP0601 KEGG:ns NR:ns ## COG: SP0601 COG0577 # Protein_GI_number: 15900509 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 1 456 1 457 459 499 59.0 1e-141 MIKNAFAYVTRKSLKSLIILLVILAMSALSLISLSIKDATNRASEDTFGNITNSFSMEIN RQVNPGTPRGGGNVKGQDIKKISESQDIDHFVKRINSVADLVGHDIIETEETIANQSPER EKNFKRTVMLTGVNDSSKETKFVSGVYKLVEGTHLEDQDKNKILMHRDLAEKNNLKVGDK IKIKSNLFDADNEKGADETVEVEIKGLFDGHNNGGVSAAQELYENTLITDIDTAAKVYGN TEDTAVYQDATFFVKGNKNLDQVIKEFGKLDINWKEYNLIKSSSNYPALQQSISGIYSIA NKLFAGSLIFAGVIVSLLLFLWMNARKKEIAVLLSLGISKARIFGQFVIELLFISIPAFI GAYFSADYTGKILGNNILNKVTGDIAKQIARQSSSSQLGGGAEVDGFNKTLTSLDVNIMP KSMIYVVLFMSLVLIISLIISSSSILKKNPKELLIDTK >gi|289656138|gb|ADCS01000052.1| GENE 52 57489 - 58136 247 215 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 189 1 199 223 99 33 5e-20 IMDVLEIKNVTYSYSNSKEKILSSVNQKFELGQFYAIIGKSGTGKSTLLSLLAGLDKPKI GQILFEDEDIEKKGYSNHRKNNISLVFQNYNLIDYLSPIENVRLVNSKAPETILLELGLD KSQIKRNVMKLSGGQQQRVAIARALVSEAPIILADEPTGNLDSTTAGEIIEILKKLAKER NKCVIVVTHSKEVASAADIILELNDKKLKKVSKAV >gi|289656138|gb|ADCS01000052.1| GENE 53 58143 - 59420 1084 425 aa, chain - ## HITS:1 COG:SP0599 KEGG:ns NR:ns ## COG: SP0599 COG0577 # Protein_GI_number: 15900507 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 37 425 1 387 387 265 38.0 1e-70 MIQNAIAYVLRKKNRTFIVFIILTMVLSCLYSCLSIMKSSNSLEKSLYKSSNSSLSITKK DNGYFEVDQFKGIENIKEIDEIVPQYDGLAKPINAKVVEGEQKIERDNLPIEFKNVVSVE ATNNTMRNVLFTSGVFTIKNGRNIEENDRGKILVHEDFAQKNNLKLNDKIGLELIEISNT GSNKEYKFEIVGIFSGKKQERYTGLSSDFSENMVFIDYESSQAALNRGEGNKIANKLALF SDDPEYMKESLNKIKEFKVDWSKYNLEKDTNAFEESLEALSGIKNIIKIMTYSIMIGGVT VLSLILILWLRERIYEIGILLSIGISKIKIVTQFIFELIFISIPAIVASLLFGNLLLHQI IGAFINSDSSGTFTDNLLKNGNGIVSFVTFIQSYGVLISIIVVSVTIACAMILIKKPKEI LSKIS >gi|289656138|gb|ADCS01000052.1| GENE 54 59447 - 60280 550 277 aa, chain - ## HITS:1 COG:MJ0749 KEGG:ns NR:ns ## COG: MJ0749 COG0348 # Protein_GI_number: 15668930 # Func_class: C Energy production and conversion # Function: Polyferredoxin # Organism: Methanococcus jannaschii # 83 273 77 236 246 82 28.0 8e-16 MDWFRHLFQSFWFLLTNSHFKGFKTGKIYGGELKKICVPGMNCYSCPGAKGACPIGSLQA VIGKSEYKFSYYIVGFLFFIGALVGRFVCGWLCPFGLIQDLLHKIPFYKKIETFKFDKYL RKLKYVILLVFVIILPLFLVDILGQGSPYFCKLICPVGMLEGGLPLVLLNKTMRGAIGFL YFWKGTILIATVILSIILYRPFCKYICPLGAIYSFFNSISVFRYKLDKDKCISCGRCKKV CQMNIDPVQNCNHMECIRCARCKNACPVDAISFGIKN >gi|289656138|gb|ADCS01000052.1| GENE 55 60330 - 60482 237 50 aa, chain - ## HITS:1 COG:no KEGG:CD1871A NR:ns ## KEGG: CD1871A # Name: not_defined # Def: hypothetical protein # Organism: C.difficile # Pathway: not_defined # 1 50 1 50 50 72 78.0 5e-12 MYKNFLRGRALPVIIMFISMAMIYYGHSNGEVKVVFDKAIRICMECIGIG >gi|289656138|gb|ADCS01000052.1| GENE 56 60509 - 61666 1568 385 aa, chain - ## HITS:1 COG:no KEGG:CD1871 NR:ns ## KEGG: CD1871 # Name: not_defined # Def: hypothetical protein # Organism: C.difficile # Pathway: not_defined # 1 385 1 385 385 544 83.0 1e-153 MKKKVLRGACVLLTLCLSLSAVGCQKGSENNKAENNKAISSEQAGMSTNANGKTETFKPS DYTLEAKEEYVYEYLGLKFKLSDETRKYISDKKIAMLDDQSPIDKELKYAILTFDKMTEE QKNAVIEKMGDGYEKWQNELERVGTIGIFEKNTPEEEISKITKCDTHTKIGVSSDGNYDC YLSTNSGAESNLLDEFNKTEIEIIDKKERPENGFVLSEKTDLENTEAFNQETSGNLSNVV TKDINGKEFSSKDFADYDITMVNVFATWCTACVKEIPDLVEVYKEMKDKGVNIVGVVTDT VDDNGENKDALEKAKIIQEKTKAPYSFLMPDKTNFNGRLNGIQALPETFFVNKNGEIVGE TYSGAKSAKEWKEVIEKELANIKNK >gi|289656138|gb|ADCS01000052.1| GENE 57 62638 - 63675 578 345 aa, chain - ## HITS:1 COG:no KEGG:EUBREC_3023 NR:ns ## KEGG: EUBREC_3023 # Name: not_defined # Def: hypothetical protein # Organism: E.rectale # Pathway: not_defined # 2 344 4 345 347 323 52.0 5e-87 MDKKDEMMIVSRDSVINKIYTIRGQKVMLDFELAEIYGYETKRFNEQVKNNIEKFDDDFR FQLTKEEWEFLRSKISTSKSEAGSGGRRYLPFAFTEQGIYMLMTVLKGELAVKQSKALIR TFKQMKDYIVENQGLIGKREFLQLSMQITSNVVEMQDLRRDLRDVEDQVAEVMDTLNNVV HKSELSDLILDLSNPQLKYGFLLLNGQPIEANLAYKDIYSIAKKSIYIVDNYIGVKTLVL LKDVPSSVEVIIFSDNIGKGLHALEYQDFCREYPFRKITFQKSGGEFHDRYIIIDWNTEH QRIYHCGASSKDAGQRITSITEVVDQMIYTDLINNLLKNPVLKLK >gi|289656138|gb|ADCS01000052.1| GENE 58 63689 - 65212 933 507 aa, chain - ## HITS:1 COG:lin1623 KEGG:ns NR:ns ## COG: lin1623 COG1961 # Protein_GI_number: 16800691 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Listeria innocua # 6 292 11 298 301 165 34.0 2e-40 MNTVDFYLRLSLEDGDQQDESNSITSQREILKDYIRSSEEFTGVQIREHIDDGYTGTNFN RPAFQKMIAMVKKNEVKTILVKDLSRFARDYIESGAYIEQIFPFMQVRFISVNDNYDSKN NENGISSLEIPFKNLVYDYYSKDISQKIRSSVKIRQEKGYYFGSKAPYGYVKDEKDHHQL IVDEEVRPIVKEVFTRYLSGESMLAIAKDLNERKVLTPGKHIGLKRGSGIWTGQIVRYLL TQRVYTGAIVGGKTRVYEVGSDHRQWTDSEDWIIRENMHEAIISQEDFAEVQNRLSSNAK HISRERKHFHILQDKVYCGKCHHKMSYTVYSGKNDGYYCPYRYKAKDCGCMKGKIQASVL EEIVSKEIQLYTESFLEKEQTRMLEQKVRESICESLLERKKKLEAEQQKNQISKMQCYER HKQGIMEKEEYLSKRESLTQRAKNIEQEILIIEDKIQENTASRHHLNVDKLREAVAEGEL VLDWINEVIDRIYVYDKDKVEIVWKFE >gi|289656138|gb|ADCS01000052.1| GENE 59 65217 - 66896 923 559 aa, chain - ## HITS:1 COG:lin1623 KEGG:ns NR:ns ## COG: lin1623 COG1961 # Protein_GI_number: 16800691 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Listeria innocua # 26 320 9 299 301 143 31.0 1e-33 MARTANRRIKSEEQLLNKESINSFQTAIYARISRDKKEKPSDSIENQIALCESFIQKSED FSLAGIYKDIAKTGTNFERPDFENLMDEVRMGKVNCIVVKDLSRFGRNYTELGNFIEKIF PFLGVRFVAVNDNLDTFHMDDPNKSLEVILKNIVNETYATDISKKVSSSHQMRIKQGGFI CGAAPYGYVARKDEDGIRRLYPDENTAPIVKEIFDAYLKGLSTLGISKLLLEKRVYIATD YRKFGKAVSDSEEAIRIWQPTTILQVLKNRAYTGTLIQGRNQKHLYEGKSRERLSEEHWT VTENAHEAIISMDTFEKVQEKISEKAAPIKRSGKENATAKDDTIFRGMVYCNLCQKRMSV HRQLSGKRTVFYFSCNRFGEYKAEKCGTAITELTLQNTVKAAFDTILSDNKKSYKAYLDG YADKKREAEQQKEKELTEIDRRISGLSRLQSEYYEKYVLGDWRKEDFEREKEHLHQKKKE LEYLKEKQIAIFEEEKRRLEEKHKYLKALFKGKTKKWDKEFVKAIIDKIFIGKDHTVEIK FNFEEIPVITEKIGRKVKR >gi|289656138|gb|ADCS01000052.1| GENE 60 66897 - 68564 787 555 aa, chain - ## HITS:1 COG:lin1623 KEGG:ns NR:ns ## COG: lin1623 COG1961 # Protein_GI_number: 16800691 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Listeria innocua # 14 315 10 300 301 155 32.0 2e-37 MSKNNLDTDVLKVAMYLRLSQDDEKYDKGFKVESNSISNQRLQINDFIDKNEDMELIEEY VDDGYSGINFERPAFKKMMEDVITGNINCIVVKDLSRFGRDYIDSGRYLQRVFPSLDIRF IALNDNYDSYTASETEKNLVIPFKSFINDNYCRDTSAKVRSVCKVKRKQGQFISNYAPYG YEKDKEDKHKIVIDKEAEYVVRKIFSMKLEGYSSYSIAKHLNDNGIPSPMEHKKAKGIRY KTGFCTKAVAKWDTPAINRILTNEVYIGTLQQGKREKINYKLDKVVSKDKSDWIEIEDNH EAIIDPHDFEIVQKLLKCDIKAKTVGEKADLFSGLLFCKDCNAQMTKKVDKRGKTPTVYY ICSSYNKGQDCSRHSIKQEELQRTVLEMIRHYIQYLGEYESVSEKIKEMEVSYELFQRVD KRQEYTKKSKAKFELLKSSLYQDLKEGIIAEEEFYDMREFYTNRIVESELILEKQSKEIA RLYKKSLGNQNFLTGIKKYQNIGILERGLLVRLVDKIYVLEDKKIEIQFNYDETIEILDK LSSYTSQTPEIREVV >gi|289656138|gb|ADCS01000052.1| GENE 61 68707 - 69009 234 100 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|299144295|ref|ZP_07037375.1| ## NR: gi|299144295|ref|ZP_07037375.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 100 1 100 100 167 100.0 2e-40 MLSAKTPTNVIKLKKENNRERSFLMNAEELARYKNMSAEEIDRKIVPDIEDIKDKKNAEP LSMYFMKVGNVIVKCSYAENGRSLEDCFLSYLKKKAMLLD >gi|289656138|gb|ADCS01000052.1| GENE 62 69400 - 69810 298 136 aa, chain - ## HITS:1 COG:no KEGG:CDR20291_1808 NR:ns ## KEGG: CDR20291_1808 # Name: not_defined # Def: putative sigma factor # Organism: C.difficile_R20291 # Pathway: not_defined # 1 136 1 136 136 198 86.0 6e-50 MKKEFYLYVNGQKVKVSEDIYKVYWREREHEKYLEQVDRKNHLLFFSSLDQDGHFAENII DEGVDVEKIVETQMMIEAVRNAISRLNAEEKDIIERLYFHDEPVRSVAKLKSITHPALIK KRNKILEKLKKFIEEI >gi|289656138|gb|ADCS01000052.1| GENE 63 70130 - 71476 1408 448 aa, chain - ## HITS:1 COG:MA2050 KEGG:ns NR:ns ## COG: MA2050 COG0534 # Protein_GI_number: 20090897 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Methanosarcina acetivorans str.C2A # 6 437 4 440 468 204 32.0 3e-52 MKQDMKEQLLTKRPIDLLFQLSVPAVIGMIVIGLYPLMDGIFAGKIIGQTAMTACGVAMP LTFFNSGISTLLGVGSASVLSRAIGKGDQKTVDKIMGNLIFWVILFSAIITVGGILLAPH FLDMVGATGEIKAYGIRYLRVIFIGSLFVNFTQSANMVMRGEGLMKKAMLIMGFGALLNI ILDPILMTVMGEYAIEGAALATITAQFVQAAVTLHYFLKKSKVVKIHKIQSDAEIKKEMF SVGSSAMMMQLLFMIQQTMLYKMAFKYGGDTNGILMAASLRVYAFSFIPLWGMSQGLQPV VGTNFGAKQFDRVRQGMKVFSIGGLILAAIFWLPSLLFSSQILSLFGVEANIIAQGVGNF RLFYSVFILYGVMVMTVTFFQSIGNGKKAGTIVMLRQLFLFVPAMIFLPMVFGIKAVWFT QPLVDFIMIMVGILMMLSELNKMGKDKA >gi|289656138|gb|ADCS01000052.1| GENE 64 71508 - 73253 229 581 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 340 560 132 353 398 92 29 6e-18 MFRLISRILNLSGKYKNRIKSAFIFAFVESILSKMPIFIAFTVLIGFYEKRNTSQTFLYV GIGLVLVVLLQAVVHFLSDKLQSAAGFMIFADKRMELGNHLRKLPMGYFTAGNLGKINSV LSSDMAFIEEVSMSTIANMMSYVLSTLVLTVFMFVLDYRIGLIAVCVTLVATLLAKSMNK MSLSEAVIRQEQSEKLTDAVLSFAEGISVIKSYNLLGENSKSLTDNFISSKDTSIKFENK ITPWTTGLNIIYGIGITFILAVALYLNHQGTLGLPYMLGLILFVFDLFSPLKTLYGEATR LTVMNAALDRIEEVLNETELQDVGKKHISKSDTSEPEICFNHVKFSYGEKEVLHDMSFKM NKNTMTALVGQSGGGKSTVANLLTRFWDVDSGEILIRGVNIKDVSLSELMSEISMVFQRV YLFQDTIFNNIAMGKENATKEEVIEAAKKARCYDFIMALPDGFDTMIGEGGATLSGGEKQ RISIARCMLKDAPIVILDEATASVDVDNESYIQEAISELVKNKTLLVIAHRLNTIRDADN IVVIKEGNIAEQGTHNELIALNGIYKNMVELQNKNNGVKIL >gi|289656138|gb|ADCS01000052.1| GENE 65 73246 - 75036 249 596 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 360 568 147 354 398 100 32 3e-20 MLNKVFEYAGSHKKSIHLASFIMLISVIMGVLPFLFAYQIINPLILGEQLEFERLAILLI SILVCLVLQAVLGGLGLNVSHKAAYNTLLGLRTSLQKKMEDLPLGVVEEKGTGTIKKMFV DDIGSLEVLLAHSLPEGIANLIVPIMVYISMFFIDWRLALMSLASIPISILAMMIMYSVG MKQMGPYYMASGKMNNTIIEYVNGMEVVKVFNKQTESYERLSKDISNYRDYALAWYKTAW PWMALYSALLPCTIILTLPLGGYFVYMGYASLSNLILVLCLSLSIGLPLLKALGFLPTMP QLNYKISALEQALNMAPLKQGENDFKGTGQTILYDNVTFGYQLNKMGENGQPETYIKNVI HNVSFTARAGEKTAIVGESGSGKSTLAKLLIHYYDVLDGSISIGGQDLRDIRLESLNKQI SYVAQDQYLFNTSLLENIRIGNLAASDDEVIEAAKKAQCMEFLNRLPDGIYSLAGEAGKM LSGGERQRISLARAILKNAPIVVLDEATAYADPENEEKMEAAIRELVKGKTLIVIAHKLP SIVDADQILVMDHGHLVANGKHKDLLESSAEYRKLWDATLFSKDWKISRKEGEMNV >gi|289656138|gb|ADCS01000052.1| GENE 66 75026 - 76423 1236 465 aa, chain - ## HITS:1 COG:MTH454 KEGG:ns NR:ns ## COG: MTH454 COG1122 # Protein_GI_number: 15678482 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, ATPase component # Organism: Methanothermobacter thermautotrophicus # 1 430 26 457 480 240 34.0 4e-63 MSVKKGEIVVLTGLSGCGKTTLLRLLNGLIPSFYDGDLDGEIKILGKDITAYKKGELAKY IGNVFQNPKDQFFCDVVEDEIALVGENLGLDRDTLKEKVEKAMDLLGISHISKKSIFELS GGERQKVAIAGTLIYDTDIIFFDEPSSSLDYDSIKHFSEILLRLKAMGKTIIIAEHRLYY LKEIFSRLIYIKDGTICDIFPNGSLSNDKCKELELRTLNERELISEKELIVAKSYIKVNK ACIHQGKRTLIEELTFELGESEIMGVIGSNGIGKSTLAKALCGLSEKYLDVSYGQKQKER LRNSYCVLQDVDAQIFLDTVENELIFCKDQNSESDLEKIREYLKNTNLWHKKTNHPQKLS GGQKQRLAIITSFLSGRKLIILDEPTSGLDYKSMRIMSDLITEKAKEIPIIIITHDLELL FKTCHSVLMLGEKDYKKISVKGNEALIMDFMDKKGNLLKEKNYVK >gi|289656138|gb|ADCS01000052.1| GENE 67 76480 - 77241 281 253 aa, chain - ## HITS:1 COG:no KEGG:TDE1604 NR:ns ## KEGG: TDE1604 # Name: not_defined # Def: ABC transporter, permease protein, putative # Organism: T.denticola # Pathway: not_defined # 35 250 12 227 228 134 36.0 3e-30 MEHIFTTNFLAIGRKKVFCKNDKKNINQHQLSDKINPLTIVGLILLFSVILTVGEQSQYL FSLIFVLGLLSLFSIKKAFRTICSLLIIWGLIYLLKPHLGNVLIGSIYTMLLIVLKFAPL FILGRVLSSYSSSHLIAAFRKIGIDGGIGIGITVFFRFIPEISIRMKEINNGMKIRGFKA SIFKPIRTFELYFVPLMYKCIDISDTLTCSIISKGIEYDGKKTSFHEVKITFIDISMIVG GMILLGASLWKIF >gi|289656138|gb|ADCS01000052.1| GENE 68 77183 - 77779 606 198 aa, chain - ## HITS:1 COG:no KEGG:FMG_1416 NR:ns ## KEGG: FMG_1416 # Name: not_defined # Def: hypothetical protein # Organism: F.magna # Pathway: not_defined # 1 184 5 182 196 124 45.0 2e-27 MNLKGIVKIAVFSVIGFVLTMGLGFLTGSFGMIPSLYLSSALPTIIVAPIFVIMCKQVGQ RGTAFSYFLLLGVFYALMGMWPVIVVCAIAGILAEFVIGKKENYTNKNMKVGIAFGTGMF IYSLHAMYFAFVFGVEGLTKQFPKMFTADYATFLYNFYTPKNILICLLIAIVASFIGAYF GTYIYNKFFSDRKKKSVL >gi|289656138|gb|ADCS01000052.1| GENE 69 77922 - 78560 644 212 aa, chain - ## HITS:1 COG:no KEGG:TDE1606 NR:ns ## KEGG: TDE1606 # Name: not_defined # Def: TetR family transcriptional regulator # Organism: T.denticola # Pathway: not_defined # 1 210 1 210 225 259 64.0 4e-68 MANGDYDLTHKKILESGKKIFKEQGFEKANLRAICKEAGVTTGAFYGHFEDKESLFAELV EPLIAEIKRYYAMYENKSFDAYKKEKRIGKETIQKILESKAQGTIDTVLHFFENKDVFEL LVFGSYGTKYSSFLDELIEIEDKNHFKILSMIYGANHVNDRITNRGIHLLNHAYFYALSE IAVHSEDKEEVRQNAILISNFFNEGWGKIRGL >gi|289656138|gb|ADCS01000052.1| GENE 70 78895 - 79245 144 116 aa, chain + ## HITS:1 COG:no KEGG:CD1870 NR:ns ## KEGG: CD1870 # Name: not_defined # Def: putative conjugative transposon mobilization protein # Organism: C.difficile # Pathway: not_defined # 1 116 1 116 116 196 94.0 2e-49 MANRIRNERLEIKLTKEEKALFEEKRKLAKCRNMSHFIRKCVLEKEIYQVDLEPFRDLQG LLSNATNNINQIAKRVNSTGVIYKEDIGDMKQEIEHFSKELWQIHSLLLNRTSGGD >gi|289656138|gb|ADCS01000052.1| GENE 71 79251 - 80582 917 443 aa, chain + ## HITS:1 COG:SP1056_1 KEGG:ns NR:ns ## COG: SP1056_1 COG3843 # Protein_GI_number: 15900926 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type IV secretory pathway, VirD2 components (relaxase) # Organism: Streptococcus pneumoniae TIGR4 # 61 251 82 265 402 72 31.0 1e-12 MAITKIHPIKSTLHLAIDYIVNGDKTDEQLLVSTHKCHQSTAHTQFLRTRGEAGTKGTVL ARHLIQSFLPGETSPEMAHQIGLELCKKILKDEYEFVLSTHIDKGHIHNHIIFNNVNMVS GKCYQSNKKSYHKIRYQSDKLCKENNLSVIDEHYESYKKKYKTSGKSWYENEQAKKGTSW KSRLQFDIDRMIKQSKDWDEFLKKMTELGYEIKYGKHIAFKPKDKPRFTRAKTIGEDYTE ERLKERIAERETIKTPTIKKRIGTIIDMKSNVKVKESKGYEYWATKHNLNTMAESVIFIR EYGIKSVQQLDEFIQKSADERQYLQDKIKAIDKEMQELSATMEQVHTVKKYRAYYKEYKA NPSDRAFFEEYKAQITLYENALCELKKSYSKLPNSKDILDRLDKLQEKKNTLMKEYSSSK ATMDELYKIRKNYGIYMGKEMER >gi|289656138|gb|ADCS01000052.1| GENE 72 80598 - 80990 250 130 aa, chain - ## HITS:1 COG:no KEGG:SGO_0340 NR:ns ## KEGG: SGO_0340 # Name: not_defined # Def: hypothetical protein # Organism: S.gordonii # Pathway: not_defined # 6 129 72 196 196 143 55.0 2e-33 MKNEVMKVFHAYTEALSKGDFGAVFEMMSDNIVWHMGGESSLSGVIVGKQALGERLGEFS KRSNGTFRVITNWAASNDCFVAASVFSLAERGEEKLNDPGIDLFRIENGKIQEVWTFAEK QEEEDKFWEQ >gi|289656138|gb|ADCS01000052.1| GENE 73 81128 - 81463 436 111 aa, chain + ## HITS:1 COG:CAC2568 KEGG:ns NR:ns ## COG: CAC2568 COG1733 # Protein_GI_number: 15895828 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Clostridium acetobutylicum # 4 105 10 111 117 106 48.0 8e-24 MATVYDKCPYVTTQKVLQGKWAIVVLYHLSTGTKRFSELERLIPDVTRTVLTRQLRQLEQ DKLIIRKVFPEVPPHVEYSLSTLGTKFQRVLDEIEIFGLDYIAELNKTHRT >gi|289656138|gb|ADCS01000052.1| GENE 74 81417 - 81545 80 42 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MGWIILPSLIKHIELNCAKIHKKRAGAALKTTPTIHLSLCFF >gi|289656138|gb|ADCS01000052.1| GENE 75 81525 - 82343 899 272 aa, chain - ## HITS:1 COG:no KEGG:SZO_12610 NR:ns ## KEGG: SZO_12610 # Name: not_defined # Def: hypothetical protein # Organism: S.equi_zooepidemicus # Pathway: not_defined # 1 190 1 190 219 285 88.0 2e-75 MDYKTIRDRIEDMAKDNHKDFVKAVISMEKGINDESALDKLYDAYMANDTINLLHEDFDY MIEDLREQGQIKDLPYIQGEKDDLINIVGNIVGKVELIERENKNGEAFKVANFSIVSKDD EGNKIYHNCSAYGEKSDIPKDFKQGDFVKLFGQIRTSIDDKGKEHSNVRILSSKLLKAKE QMKGQDKSQEIAKLKSEIEEREKDLFYADSWEQSGQIRADIEKMKAKLNILTNSEKGQEN GKKSIIGAIKEYQAEDKEKPKVKQESSKEAER >gi|289656138|gb|ADCS01000052.1| GENE 76 82386 - 91229 7057 2947 aa, chain - ## HITS:1 COG:AGpT188_2 KEGG:ns NR:ns ## COG: AGpT188_2 COG4646 # Protein_GI_number: 16119916 # Func_class: K Transcription; L Replication, recombination and repair # Function: DNA methylase # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 1423 2732 2 1305 1315 605 30.0 1e-172 MRINDFHNILELIKQDILHSEAEYLKLLKVVGNNQRYDFRSQLSIYDKNPEATACAKFDY WRERFHRTVMRGQKGIPILEDYGTYKKVDYIFDVSQTVSRNRDVNEVNLWKFDKEAHQDV LKEMIANEGYEESESNLENIFSLSRIYGDEKIGSLMNELRITDEDRISFVKFVRDSISYA VASRFKVDYPVDYELLRENISRLDTISLMSVGETVSDISGNIIDTTIQKSKELELQKGVL RNREAGYNKIREEIEKGENHVLRRDDKERISETERVFRNGEYGGDSSQNQGEYTKQLGGT DGIHQGISESDLRSDEAGLSFTERGAEPLRDVSGSIQGEEADRTPDGYSETGDSIYEDRE AEADEVLEDRGREQSTVWGDDFSLEGNDHQGNRGNLKENTEVEIREADKASFSLPENSYG QIRLSIPLAQKDIDTVLINGGNHDGGRLPIIAEFSKGKSNEELGEYLKNTFQGGNGYIID GNEISAWYSDKGLHFASGTSAREDDTQVLSWSDAANRIAELLENGEFATNVEISEAFDYE RDRISESLWYLIHDLSEEGKEQGFFEFLEKGGGFPDETKRLSEALKNPEYLVDVIKEYGR FLEAYREDRDVLRFDYHKVDSLYQKLQELALPRKEYTSNLTELPKVKAFITEDEVLATLS MGSGADRGKERITEFFKENHTLQEKADFLKDEYGTGGRSHAVSGLTGSGEWHDAKGIKLE KNDCNDVFLTWSRVAKHIDEILSKNLYLEEKKIESKAEREEAKELQYYSKDEPENLMTDE MIERVPELYAQEDVELADKEVHAAYIIPFRSNWTWYMTEYDRESGDAFGLVLGIEPEWGY FNLNELKELNAQRLVLEDFPKTFQEIKDTELVKQMSEEEIDRVFNGQLSSKDNQKEQDIF YLSDEMGISLEESEGIIDDRSRLSGVSTEDTDNKDNLLDEKSPVQSTLFDYIQQKEEVEL NEKEESLAEQFAVKQGDTVYFDHEAYIARDIEKNKVNGKPEVWLYPARDGNRQIAIVPFM DNEELLKKISLERPNFLVGDEVRYKDKDCTITRFDNMGNNLKTVTVMDNTEYLGGMITGS DVIPYRLESDLERIFENLTYTKAKDTIQDIDEKAEKPKIEAHNFKIIEEILPEKLTPSER LNQNLEAISMLKRVESGQRELDNTAQEVLVKYVGWGGLSEVFDEERGGQWKKARSFLKEN LSQAEYEAARESTLTSFYTPKTVIDSIYSTLSGMEFKNGNILEPSMGIGNFIGNLPDEMK KSKFYGVELDSVSGRIGKLLYPESDIQIKGLEETSFSNNFFDVVIGNVPFGEYKVNDREY NKNNFLIHDYFFAKSIDKVRNGGIIAFITSSGTMDKKDESVRRYLAARAGFLGAIRLPND TFKGVAGTEVTSDIIFLKKRDSIRERDEDWIHLSEDEKGLTYNKYFVENPQMVLGSMEEV SGKFGNTLACLPRENADLKELLARASEEISKGATYEEIELLEDEISTMPATDDVKNFSYT IIDDEVYYRENSLFVKKEITEKNKEKIKDYLELNTALKDVIYKQKEDFSDDEVKKSQEKL NEVYDGFSKKHGFVNNLSNTRALKEDSNFPLVSSIEILDEEENFKEKGDIFSKRTITKAK TIDHVDTSLEALVLSMSEKGYVDFDYMESLTGKDRPTLIEELRGEIYLNIREEQNFYRPL SFNPEDGDLPFACASGSDSYKYGYVTKDEYLSGNIRDKIAIVDSYLSKLRQTERELPHLG YAEDGKEKELISYEMNRLEYQKAELTKVLPKALEASEISVRLGATWIPMKDIEKFIFETL KTPGYAKWDIKVKFSNLTSEWNVEGKSADRGNDLAEMTYGTSRVNAYKLIEDALNLKETK VFDQIENPDGSKSSVLNKKETLLAGQKQELLKEEFKNWIFSDQERRNRLVKLYNERFNSI RNREYDGSNLSFEGMNTEIELRPHQRNAIARSLYGGNTLLAHVVGSGKTFEMVASAMESK RLGMCSKSLFVVPNHLTGQIGREFMQLYPSANIMVADKKDFEPKNRKRFIGKIATGEYDA VVIGHTQFEKIPMSKEYQEKHIQDQIDEILNYIEEYKHDRNQNFTVKQLEKTKKKLEARL EKLNDDFKKDDVITFEELGVDKLFVDEAHGFKNLYLHTKMRNVAGIGQSEAFKSSDMFMK CRYMDEMTNGKGIVFATGTPVSNSMTELYTMQRYLQYENLKKNHLEHFDAWASTFGETQS AFELAPEGTGYRVKTRFSKFYNLPELMSMFKEVADIQTADTLDLPTPEAHYEVIKTLPSE EQKEILKGLSERADKVRNRVVEPDEDNMLKITNDGKKLALDQRLLNPLLPDNSDSKVNVC VKNVFAIWDKTKDDRSTQLLFSDMSTPKGDGEFNIYDDIREKLVAMGIPKEEIAFIHEAN SDKQKDELFAKVRKGDVRILLGSTQKMGAGTNVQNKLIALHDLDVPWRPADLEQRAGRIV RQGNENKEVNIYRYVTENTFDAYLWQTIENKQKFISQIMTSKTPVRVAEDVDESSLNYAE IKALATGDPKIKEKMDLDNEVTKLKMLEANYKSNRYRLEDKVAKNYPEEITRTEKLIEAV KNDISEVEPKAEGEEKFTSITILGEKITDKKLAGEKLLEAISKIKINESKMIGKYRNMDL EVSYNFFTNEHNFSLNGAAKHSGELGTSADGNITRLDNALEKMPEKLKRLEEKLISTKEQ LENAKEELKKPFEKADELKTKVLRLAELNKLLDMGEVEEKRNDNPLVEDVKRAIIDFCNR EYEENHSYDEFDTLYPDLKHIGIAYTDTPDERHGIQYELNLEDYTWTQYIDDTPIKTESF DYENKGENEALKNMKNEIELSSFEDLVYVDSEDLRAATGLDIDDEGNFYDPLAKDLDNDG IPDRYDNDFRDSDYFESTYDVEDNLHTKEETAQRTDDKPSILGQIRAYQSESKTEEKQTT KEQEYAR >gi|289656138|gb|ADCS01000052.1| GENE 77 91279 - 91830 625 183 aa, chain - ## HITS:1 COG:no KEGG:SEQ_1255 NR:ns ## KEGG: SEQ_1255 # Name: not_defined # Def: conjugative transposon hypothetical protein # Organism: S.equi_equi # Pathway: not_defined # 1 183 1 183 183 307 81.0 9e-83 MFDTLMKLDENREALDFYATDKRAIEELLNREKFRTTVYEPACGQGHIGKVLKEYGYKVK ATDICYRGYGEEREVDFFTVKENTLDIVTNPPYFCADKFIKHALEISKSGTKIAMLFRLA FLEGQKRYEMFKKYPPERVYVFSKRLNCAKNAEFEKYKSSAIAFAWFVWEVGYTGITELR WIK >gi|289656138|gb|ADCS01000052.1| GENE 78 91834 - 93549 1375 571 aa, chain - ## HITS:1 COG:CAC3567 KEGG:ns NR:ns ## COG: CAC3567 COG0550 # Protein_GI_number: 15896801 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Clostridium acetobutylicum # 1 571 1 597 709 420 45.0 1e-117 MEHKLVIAEKPSVAISIAKVIGAKNKKDGYYEGNGYKVSWCVGHLIQMANPDSYDEKYAK WNIDDLPIIPKEYKYEVAKATKKQFAVLKKLMNDKEIDTVINACDAGREGEAIFRLVYLQ ASCKKKMKRLWISSMEDSAIKDGFDKLKDGKDYDNLFESAQARAIADWLVGMNISRLYSC LYKQNYSVGRVQTPTLAMIVKRDDEITNFKKDKYYTVELSMNGFILSTERIDDEVAAEQL INLVGDKIEITDVIQKEKITKPDLPFDLTTLQRECNKYFGYSAKQTLDYAQSLYEKKLIT YPRTDSRCLTEDMITSTVNNILGKNDFDTGRIKTVFNSKKVTDHHAIIPTVSSLSEDLSG IPESEAKVYRLISNKLHASVGYPLIENTTKIVATFDGFEFTSSGKVIVDEGFTKYLKEYM SKKNEEPVLPEINVGDVLEIKEKEIKEKYTQAPKHFTEDTLLKAMEIAGNDSLDKNVEVE RKGLGTPATRAGIIENLIYKGFIERDKKNLIATPKGKSLIEIVADNFKSAEMTAQWEMEL SDIAQGKSSKKEFLEGIEAEIKNTITKYKEV >gi|289656138|gb|ADCS01000052.1| GENE 79 93638 - 94495 959 285 aa, chain - ## HITS:1 COG:no KEGG:CD1858 NR:ns ## KEGG: CD1858 # Name: not_defined # Def: putative cell surface protein # Organism: C.difficile # Pathway: not_defined # 60 280 303 523 523 211 65.0 2e-53 MRTVMKNKVFTRVMTALLLAVTVIMAAYSSVAYAQVDEKEAAQETLKEEPKKPEITVIKK EEEKEVRYPNKLTAKEPENLKQKMASNGETTNTNKGLPTEPTKSRASVTENVNNANQEYP IHHGDSSGNKETNKYSADARQFITFQTKNGKTFHIIINHDEQGENVMLLTEVSEDDLLNM VEIKEKSKEVVKEEPIKDEPKEEAKPEKKEEKSSTGTYILLVLVTLGALGAGYYFKVAKK KEDKELEAFEEDDDFFSEAEGSEETENEEVENQEMEDETEDSEED >gi|289656138|gb|ADCS01000052.1| GENE 80 94473 - 94709 242 78 aa, chain - ## HITS:1 COG:no KEGG:SZO_12840 NR:ns ## KEGG: SZO_12840 # Name: not_defined # Def: hypothetical protein # Organism: S.equi_zooepidemicus # Pathway: not_defined # 1 78 1 78 79 70 79.0 2e-11 MKKELTAVKNKIQKLKDKKALIDEELEPLLIREEELENEEIIAICRKNNITITDLMAKVK KEQTKIKKEKTDENSYEK >gi|289656138|gb|ADCS01000052.1| GENE 81 94727 - 97024 1384 765 aa, chain - ## HITS:1 COG:lin0591_4 KEGG:ns NR:ns ## COG: lin0591_4 COG0791 # Protein_GI_number: 16799666 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell wall-associated hydrolases (invasion-associated proteins) # Organism: Listeria innocua # 642 764 108 224 224 101 45.0 4e-21 MNKKLKKDFAERQKIKEEAKLLGKEYMDADEVGKLKHGDDYRGKIIHEKDRFQDKIHEKE SKRNSKNELLQGSPNKRKAKQPKIVLKDKETDSPMDKTQDKFVSDYQSVAFTSLENDETT VGERISAPKSIKTEKEIFFEEQKAELLKKRKMAEKVRKELRTEGKYNQNEEVYDPLGKDL DNDGIIDRYDNDFRDSDYFESTYDVEDNLHTKEGITEHSNKKHNAQKKLYKRKNYSDKVY TRKKEDNPADDKTEGKKSSKEMIQGREKKKSAKGSVLSGLAKGSEAVRDYLSHGSDENQG VETGEKIADGNSKLLHGIKNYADKKKAKKSYNLSQKDYKIRKRKSKLEFREAKEELKKTK EYKQANAFKKFQKKKQMKSTIGKRNKSRLRDRIKESLIGTLKSSKEILIRKAKGLMMIVI GLIILGTFIIQFAGTSMTGMINSTSGVLTTTYLSDQNVLSEINQQFSGLEEGLQDEISSV EENYPGYDEYLIEKEGEIGHNTHELLSYITSRCGEIKDSKEVQSIIHDLFTKMYDLSYRE EIEIRYRTVTETYTDEDGNEHTESHEEAYEYKKLIVTLKKREMDSIVREIFAEYPDNVLH YEALLASKGNMETVFGSGNGNLSEIVDNPDFSNPGIAFDDVTVKALFNEAEKHIGKRYVF GANGPNNFDCSSFVCWSFTHSGVKNMPRTTAWGIYKTYCNPVSPSEAKAGDIIFFKNTYD SGSPISHVGIYAGNGMMIHAGDPIRFVSINTPYWREHFYGFGRVK >gi|289656138|gb|ADCS01000052.1| GENE 82 97029 - 99458 2199 809 aa, chain - ## HITS:1 COG:CAC2047 KEGG:ns NR:ns ## COG: CAC2047 COG3451 # Protein_GI_number: 15895317 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type IV secretory pathway, VirB4 components # Organism: Clostridium acetobutylicum # 252 779 45 594 617 105 23.0 4e-22 MNSKRKIQQLKLTQNKKALKARKQELKQDKTKIKKEKGGFLSLIFKKEPKRHTVEDTLPY LRLLKNGICQSDEKHFSKSIAFEDINYQLALEEDRDLIFNQFANFLNSFDPSVGIELSYI NQLGRNEEMQSAIQIPDKKDGFDEIRLEFREMLKNQIVKGNNGLRKSKYITFTVEADNME QAISKLERLEIDILSSLKSMSVRAESLNGEERLKILHDVLNPGKTFEFSYKDLKKKESTK SYITPNEFNFTPSRYFKFGKFIGATSHFQILASELSDRMLAEFLDIDDNINISFHIKAIE QSEAIKMVKRKNTDIDKMRIEENKKAVRAGYDMDILPSDLITYGEDVKSLLKDLQTRDER MFVVTIVFMNFARTVQKLENTIAQISSIANKHNCKIKRLDHAQEQGLVSVLPLGVNKLEI NRGLTSSSTAVFIPFTTEELFINSSNSLYYGLNALSHNLIMADRKKLKNPNGLILGTPGS GKSFSAKREMANAILVTDDDVIICDPEGEYGNLVRQFNGEVIKVSSKSKDYLNPLDINMN YGDGDAPLKDKANFIMSMLELVVGGSGLTAEEKSVIDRCLPKIYEKYFENPISENMPILQ DLYDMLKNQEEKVGKKLATEMEIYVSGSLNVFNHRSNVDLNKQLLCFDIKELGSQLKKIG MLVIQDQVWNKVSQNRGNKATRYYIDEFHLLLKEEQTASYSVEIWKRFRKWGGIPTGITQ NVKDLLMSKEIENIFDNTDFVLMLNQASGDREILARKLKISKPQLKYVTNSNAGEGLLFF GNTIVPFIDKFPKDTILYQKMTTKPEEVR >gi|289656138|gb|ADCS01000052.1| GENE 83 99370 - 99759 378 129 aa, chain - ## HITS:1 COG:no KEGG:CD0417 NR:ns ## KEGG: CD0417 # Name: not_defined # Def: hypothetical protein # Organism: C.difficile # Pathway: not_defined # 1 129 1 129 129 195 85.0 4e-49 MAYVPIPKDLKRVKTKVAFNLTKRQLIGFTLAGLVGIPVYLFMRKFVANDIAILFLIVST LPIFFITLFEKDGLTFEKYFKYIYLHKFYQPQKRVRKEVYLEQQKKNSAAKAHAKQKGVK SKKTGIKAR >gi|289656138|gb|ADCS01000052.1| GENE 84 99763 - 100026 175 87 aa, chain - ## HITS:1 COG:no KEGG:SZO_12880 NR:ns ## KEGG: SZO_12880 # Name: not_defined # Def: hypothetical protein # Organism: S.equi_zooepidemicus # Pathway: not_defined # 1 87 1 87 87 104 63.0 1e-21 MKKRKKIWKAALLVTGIAFVMDSIKKHKKMKELSERITRIGHCHNDFCLMQGRINQSTEE QLAIIQEEIGSVYEHMEELSKEKEDGR >gi|289656138|gb|ADCS01000052.1| GENE 85 100043 - 100906 1024 287 aa, chain - ## HITS:1 COG:no KEGG:CDR20291_1789 NR:ns ## KEGG: CDR20291_1789 # Name: not_defined # Def: putative conjugative transposon membrane protein # Organism: C.difficile_R20291 # Pathway: not_defined # 1 287 1 287 287 474 93.0 1e-132 MFGIFDKIEEFFKELLLGGIQANLESMFLDINNQVGKVAADVGQTPMGWNGEVFNFIKSI NDSVIIPIAGLIITAVLCIELINMVMQKNNMHDTDTFDFFKYIIKMWVAVWLVSHAFEFS MAVFDVAQSMVNKAAGVINTSAVVSGDQIVQMVEALKDKGLGELIMILFETSLIKVAIQG ISIVIMLVVYGRMFEIYVYSSVSAIPFATMGNKEWGQIGTNYIKGLFALGLQGLFLMVCL GIYAVLVKTIQITDIHTSTFTILGYAILLGLMMLKSGTLAKSVLNAH >gi|289656138|gb|ADCS01000052.1| GENE 86 100926 - 101141 461 71 aa, chain - ## HITS:1 COG:no KEGG:CD1852 NR:ns ## KEGG: CD1852 # Name: not_defined # Def: putative conjugative transposon membrane protein # Organism: C.difficile # Pathway: not_defined # 1 71 1 71 71 105 94.0 7e-22 MEFFTQAVDVLKVLVMAVGAGLGAWGVINLMEGYGNDNPGAKSQGVKQLMAGGGIVLIGL KLIPLLANVLK >gi|289656138|gb|ADCS01000052.1| GENE 87 101143 - 101454 344 103 aa, chain - ## HITS:1 COG:no KEGG:CD0413 NR:ns ## KEGG: CD0413 # Name: not_defined # Def: putative single-strand binding protein # Organism: C.difficile # Pathway: not_defined # 1 91 1 91 103 131 91.0 6e-30 MKQEMMNINANLVAEPTFSSFEKDGETVEVVNFALVKKYGKGKEYINCAAYGEKVETAKD FEKGDLIHIFGYFKDREKDGKTYKNFVVKSYNKIEKKENKEEE >gi|289656138|gb|ADCS01000052.1| GENE 88 101627 - 102064 466 145 aa, chain - ## HITS:1 COG:no KEGG:SZO_12560 NR:ns ## KEGG: SZO_12560 # Name: not_defined # Def: hypothetical protein # Organism: S.equi_zooepidemicus # Pathway: not_defined # 14 137 1 124 124 176 76.0 2e-43 MNDKELIGKVHSSMYGQLKKRGYATAVDVLMDLEILSKVNYERWRNGQVPYLEKVCNINL KKLSTILHEMRVYAKKGNLKPSPCVYKKWAVKKKNGQGKKPVIKLRFSKSGSEDIEKWYA THFVDTKKIEKIKEEKQVNNSDDKQ >gi|289656138|gb|ADCS01000052.1| GENE 89 102137 - 102856 666 239 aa, chain - ## HITS:1 COG:CAC1969 KEGG:ns NR:ns ## COG: CAC1969 COG3505 # Protein_GI_number: 15895240 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type IV secretory pathway, VirD4 components # Organism: Clostridium acetobutylicum # 2 207 354 562 591 112 36.0 7e-25 MSEDELELDTLGDRKTALFVIISDTDDTFNFVVSIMYSQLFNLLCDKADDVYGGRLPVHV RCLLDEFANIGLIPKFEKLIATIRSREISASIILQAQSQLKAIYKDNADTIVGNCDSTLF LGGKEKTTLKELSETLGKETIDLYNTSETRSNQKSFGLNYQKTGKELMSQDEITVMDGSK CIFQLRGVRPFLSDKFDITKHKNYKLLEDYDKKNVFDIESYIKRKGKAKLHGDTVITRV >gi|289656138|gb|ADCS01000052.1| GENE 90 102958 - 103143 252 61 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|299144323|ref|ZP_07037403.1| ## NR: gi|299144323|ref|ZP_07037403.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 61 1 61 61 70 100.0 3e-11 MHENKNEQTTGTKTIKKIGKTTYEVIVHFNDKSSETMQDKLKRIMLREFRRKSNEKKDNF D >gi|289656138|gb|ADCS01000052.1| GENE 91 103245 - 104282 682 345 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0424_1167 NR:ns ## KEGG: HMPREF0424_1167 # Name: not_defined # Def: hypothetical protein # Organism: G.vaginalis # Pathway: not_defined # 1 345 15 358 358 535 84.0 1e-151 MAEENKEIVIVDDKTIQEKIYFIRGQKVMLDSDLAEIYGYETKMFNRQVKRNIEKFEGDD FMFQLTDEEVYELSRCHFGTLNNGQGRGSNIKYKPYAFTEQGIYMLMTVLRGELAIRQSR ALIRMFKQMKDYIVENRDFLSSKEMVQLLLQTNKNTNDIMQHSKEIAKLDDKISTLATKE DLKKVMDNFIDPDTYKHFLLMNGDKIEADVAYTKIYKSAKESIYVIDNYIGLKTLELLRA AKDNVEVIIFSDNVRNKDMLTKNILNDFRRDYPNINLKMKIAGKRYHDRYIAIDYGTENE AFYLCGASSKDAGNKISSITKIEESSKDMYHTMFAGMLNNKNLKI >gi|289656138|gb|ADCS01000052.1| GENE 92 104356 - 104679 348 107 aa, chain - ## HITS:1 COG:no KEGG:FMG_0971 NR:ns ## KEGG: FMG_0971 # Name: not_defined # Def: hypothetical protein # Organism: F.magna # Pathway: not_defined # 1 106 1 106 107 191 93.0 6e-48 MRIQFTVSDEELKILTKKAEEGNYPSISEYCKCSSLQENTSYVDLYNTLLNKISSLPKGK EFVLRELIATPPALIGRWFYENVNKGLVKNVEHIGKAEGGVEKYKRT >gi|289656138|gb|ADCS01000052.1| GENE 93 104864 - 105577 417 237 aa, chain - ## HITS:1 COG:no KEGG:FMG_0972 NR:ns ## KEGG: FMG_0972 # Name: not_defined # Def: putative replisome organizer # Organism: F.magna # Pathway: not_defined # 1 237 1 237 237 432 94.0 1e-120 MADKRMFSLKIVDSDLFLDMPLSSQCLYFHLSMRADDDGFVNNPKKIIKIIGANEDDLKI LIAKGFVIVFEQGIIVITHWKINNFIRKDRYKPTLYENEVQSLSQTKNGMYIKEVGCHLV DQRLTSGQPSIDKGRLDKVSIDKGREESTPPPNSKTYGEYKNIRLTEEEYRKLKEKLQGH TDMMIEKLSRYIKSTGKTYQDHYVTILNWYEQDKDKLSQKKTGKIPTFEDYDKGEHL >gi|289656138|gb|ADCS01000052.1| GENE 94 105659 - 107194 772 511 aa, chain - ## HITS:1 COG:mll0964 KEGG:ns NR:ns ## COG: mll0964 COG0507 # Protein_GI_number: 13471082 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member # Organism: Mesorhizobium loti # 1 223 36 235 1015 136 34.0 1e-31 MEKHMTILKKTDLAFSKIFLPEHVPKEFSNREYLWNEVEKIEKSKNSQLARNLLFELPRE LNEQERIKLISEFIEENFTSKGMIADCSIHNPMASDHEEQPHAHILLTLREIDEKGNWKP KCRKEYILDENGEKIKLKSGNYKSRKVNLNDWNEPDKAKEWRENFSKKANEYLARNNIQK RIDPRTFEKQGREELPQIHLGTSSYQMEKKGIQTERGNQNRKIIALNLEFRKLKEELSKL TSWIGSLLGSLQVKYDEYKQEKKEEYENKAELFNLYEYISIYYDLQGEKARKLNPYASNK KIGADLRRFSKARIYLKDNNLKTIADLQEKISTLQSQNKKISQDIKAKTTRIENLNKCFA YADIIKDNKQVFEEWNSKSLFKDSFYNSHKDEIDKYKRARAILEKITGSSAIKSKDWKKE IQSLESEISKLNRQSQKVKEEYESINHIKYAVKTVNEDYGIDLSIEIDKAIKRGRGEKPS VIAQIKKYQEQLEAYEKRKEKTKNYYRKEER Prediction of potential genes in microbial genomes Time: Fri May 27 07:48:20 2011 Seq name: gi|289656137|gb|ADCS01000053.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.53, whole genome shotgun sequence Length of sequence - 7239 bp Number of predicted genes - 9, with homology - 9 Number of transcription units - 4, operones - 2 average op.length - 3.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 363 378 ## COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member - Prom 588 - 647 3.9 - Term 604 - 644 1.6 2 2 Op 1 . - CDS 679 - 1053 460 ## FMG_0974 hypothetical protein - Term 1082 - 1131 11.1 3 2 Op 2 . - CDS 1140 - 1556 535 ## FMG_0975 hypothetical protein - Prom 1686 - 1745 8.1 - Term 1598 - 1644 9.3 4 3 Op 1 . - CDS 1839 - 3194 1481 ## COG0534 Na+-driven multidrug efflux pump 5 3 Op 2 34/0.000 - CDS 3219 - 4613 167 ## PROTEIN SUPPORTED gi|225088774|ref|YP_002660041.1| ribosomal protein S16 6 3 Op 3 . - CDS 4606 - 5307 480 ## COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters 7 3 Op 4 . - CDS 5327 - 5914 654 ## FMG_0940 hypothetical protein 8 3 Op 5 . - CDS 5934 - 6527 566 ## FMG_0941 hypothetical protein - Prom 6547 - 6606 3.4 9 4 Tu 1 . - CDS 6612 - 7238 550 ## FMG_0981 site-specific DNA recombinase Predicted protein(s) >gi|289656137|gb|ADCS01000053.1| GENE 1 3 - 363 378 120 aa, chain - ## HITS:1 COG:mll0964 KEGG:ns NR:ns ## COG: mll0964 COG0507 # Protein_GI_number: 13471082 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member # Organism: Mesorhizobium loti # 7 120 5 118 1015 96 44.0 1e-20 METKSLHTHVDIVARSKGASVIAKAAYNARDKLQDEYYGKTHDYSKKTDLAFSKIFLPEH VPKEFSNREYLWNEVEKIEKSKNSQLARNLLFELPRELNEQERIKLISEFIEENFTSKGM >gi|289656137|gb|ADCS01000053.1| GENE 2 679 - 1053 460 124 aa, chain - ## HITS:1 COG:no KEGG:FMG_0974 NR:ns ## KEGG: FMG_0974 # Name: not_defined # Def: hypothetical protein # Organism: F.magna # Pathway: not_defined # 1 124 1 124 124 127 96.0 1e-28 MKELENVMSQLEKETKKKEQAENKIKQLRQKKSQLKRKADTKRKVEKGGVFEKFEKQITG VEENTDNDLIYAFLDYVLSDNRNREKLKELTEIHLKEKEISLEENPNLKEENANDDFEEL TEEE >gi|289656137|gb|ADCS01000053.1| GENE 3 1140 - 1556 535 138 aa, chain - ## HITS:1 COG:no KEGG:FMG_0975 NR:ns ## KEGG: FMG_0975 # Name: not_defined # Def: hypothetical protein # Organism: F.magna # Pathway: not_defined # 1 137 1 137 138 184 82.0 7e-46 MDKKEYFLYVKGKAVKVSEEVYKAYWEITEHEKYLQRKDWKYGVIPFSTLDNDGHFVDNI IDERIDLEKIVEVKMQIEELNKALATLTKKERELIEAIFYKEESLRSIGKKEKVSYQAIG KRRDKILEKLRKLLEDKF >gi|289656137|gb|ADCS01000053.1| GENE 4 1839 - 3194 1481 451 aa, chain - ## HITS:1 COG:MA1121 KEGG:ns NR:ns ## COG: MA1121 COG0534 # Protein_GI_number: 20089987 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Methanosarcina acetivorans str.C2A # 6 449 11 459 475 202 30.0 1e-51 MKEDMKTQLLTKSPKELLFKLAIPGIIGMIVIGLYPFMDGIFAGWLIGDYAMSAISVSMS LTIINGGISALIGVGSASILSRAIGKGDKETTDKIFGNFCYWVIFFSVIITILGLVFAPH FLDLVGAKGNIKELGVRYLRVVFFGSIFVNFAQAGNMTMRGEGALKQSMKIMGAGAILNI ILDPIFMKLMGEYAIEGAAIATVISQIVQAILTFSYFSKKSAFVGIHKIQKYKAIYSEMF SIGSSAMMMQILFAVQQTFLFKQAFAYGGDDWGILMSATMRLYMFSFIPLWGMSQGLQPV IGANFGAKQYGRVKDTMKIFMYGATILAAASWIPSMFCSEKLLSLFSVRREIIEVGVVNF KMFYSTFILYGIMIMTLTFFQSIGDGKKAGMIVMLRQLVLFIPAILLFPKAFGASAVWWT EPIVDFSMIMFGLFLMLNELRKMGKQQITKS >gi|289656137|gb|ADCS01000053.1| GENE 5 3219 - 4613 167 464 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|225088774|ref|YP_002660041.1| ribosomal protein S16 [gamma proteobacterium NOR5-3] # 272 450 11 204 312 68 27 1e-11 MLELQNLTVSFDGKSILKNINMIFKPGEVTVITGHSGTGKSSLLKVINGIIPEYNNAELE GDIVFNGKSLFGLTILERSKFISTVFQNPKTQFYCINSTDELAFQLENRNIDKNLILDKI RYYSEVLGTKELLDRNIFELSGGEKQLIAVTACGISENEIILLDEPSSSLDQAAIEHLQK AIEELKKRKKIIVIVEHRLFYLKDTIDKLCVIENGTYKEYTKEHFCDDFFEQVSEKHNLR SFNAISKNKFSNRKYEQVELLKKNSLNLDYKALSCLNFKKKYERKEIFDFSIAFESGINF IIGQNGVGKSTFINLLMGLTRGTGEVFYNGIKVKKRCENIFAIMQDVNYQLFTESVWQEI STITKEDELKNEILRMVDLFDKKEMHPNSLSGGEKQRLLLAMSMLSRKPIIIFDEPTSGL CKRQMDILIGFLNKMTEQGKIIIIITHDYEFIDRCNGKVYEFMK >gi|289656137|gb|ADCS01000053.1| GENE 6 4606 - 5307 480 233 aa, chain - ## HITS:1 COG:SP1437 KEGG:ns NR:ns ## COG: SP1437 COG0619 # Protein_GI_number: 15901289 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, permease component CbiQ and related transporters # Organism: Streptococcus pneumoniae TIGR4 # 82 216 1 131 147 67 33.0 3e-11 MIIKLDFRTKLFMTIVLSYVMVLGNIQTKYFVQAILISTIPIILLIHAKYTRVAIIGVAT LLFVYAADKFLIGLNYNPMVAILLIIVMVIKKILPAFLMGRYTILTSNVGESIYSLKKMK CPDEIAIPLTVMVRFFYAARIDYSHIKKAMRLRGLTLKKLIKSPILLFEYRFVPLLMCLS KAADDLTVSAMTKGLAVNQKRTSISETYMGLMDYIFFSIMVWIIYLYMRGKYA >gi|289656137|gb|ADCS01000053.1| GENE 7 5327 - 5914 654 195 aa, chain - ## HITS:1 COG:no KEGG:FMG_0940 NR:ns ## KEGG: FMG_0940 # Name: not_defined # Def: hypothetical protein # Organism: F.magna # Pathway: not_defined # 1 192 1 192 193 258 70.0 1e-67 MSKRLEVKDLINIGLFSVLGFIFMMIGSFLAMVPVLMPLVPFAQGVLVGPVNMLYSTKIK KRGMIFIQSLLIALVYVAMGHGPWALLTAVIAGIIAEIILKSGEYTNVKKARLAFSIAPL CTLGNWLPIFISRNEYIKQMLEQGYNQEFIDKMLSVMPNWIIVVMAIVGIIGAYIGCSIG MAFLKKHFKKTGMEK >gi|289656137|gb|ADCS01000053.1| GENE 8 5934 - 6527 566 197 aa, chain - ## HITS:1 COG:no KEGG:FMG_0941 NR:ns ## KEGG: FMG_0941 # Name: not_defined # Def: hypothetical protein # Organism: F.magna # Pathway: not_defined # 1 195 1 195 197 237 65.0 2e-61 MKEEKQKVGQIKKKKIREAAKKCFLTKGFQSTTMEDVITEIGMSRGGVYHHYASTNEMLK DLMLDGNDYRNNLINEYLKNNRGKDKYQQMGDILVDKSLADTELMRLYTLLLQAKKYNQD LEKLYQELKLNTTNELSLIAKQLGIKADIFGDGFLVNYINGLILSSEILGARKSYGEHKR YIKETMINYIVDVEKKN >gi|289656137|gb|ADCS01000053.1| GENE 9 6612 - 7238 550 208 aa, chain - ## HITS:1 COG:no KEGG:FMG_0981 NR:ns ## KEGG: FMG_0981 # Name: not_defined # Def: site-specific DNA recombinase # Organism: F.magna # Pathway: not_defined # 1 195 413 607 617 233 76.0 3e-60 TDSTNRLQELERLMCRIYEDMILEKIPNTRYEILNNQYETEQRELSKEIDGLEKAIKRYE KETNRAKKFIRLIERYDNFDELTPTIINEFVEKILVHERDRKGSQTANQKVEIYFNFIGN YEPPKEELSEEEMQKLREEEEKERARKDRLHQNYLKRKANGKQKEYEDRYKARREEKKQE KLKSLKRTGIPVSEYIKNIKKTKLIYNN Prediction of potential genes in microbial genomes Time: Fri May 27 07:48:36 2011 Seq name: gi|289656136|gb|ADCS01000054.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.54, whole genome shotgun sequence Length of sequence - 4063 bp Number of predicted genes - 7, with homology - 6 Number of transcription units - 3, operones - 2 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 3 - 249 168 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs 2 1 Op 2 . - CDS 290 - 751 271 ## COG3505 Type IV secretory pathway, VirD4 components 3 1 Op 3 . - CDS 826 - 990 192 ## Ccur_08100 hypothetical protein - Prom 1032 - 1091 1.9 - Term 1008 - 1052 6.0 4 2 Op 1 . - CDS 1098 - 1712 559 ## Ccur_08110 hypothetical protein 5 2 Op 2 . - CDS 1728 - 2147 356 ## Apar_0543 hypothetical protein 6 2 Op 3 . - CDS 2209 - 3669 1181 ## COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member - Prom 3735 - 3794 4.2 - Term 3718 - 3756 3.1 7 3 Tu 1 . - CDS 3907 - 4062 77 ## Predicted protein(s) >gi|289656136|gb|ADCS01000054.1| GENE 1 3 - 249 168 82 aa, chain - ## HITS:1 COG:lin1623 KEGG:ns NR:ns ## COG: lin1623 COG1961 # Protein_GI_number: 16800691 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Listeria innocua # 5 82 6 83 301 93 57.0 8e-20 MRSYEKITALYERLSRDDELQGESNSIMNQKKILEEYAKKNHLENIVHFTDDGISGTQFD RPGFMAMMNGVNQGNIGCIIVK >gi|289656136|gb|ADCS01000054.1| GENE 2 290 - 751 271 153 aa, chain - ## HITS:1 COG:CAC1969 KEGG:ns NR:ns ## COG: CAC1969 COG3505 # Protein_GI_number: 15895240 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type IV secretory pathway, VirD4 components # Organism: Clostridium acetobutylicum # 2 134 206 326 591 69 30.0 3e-12 MLEDNGYEIKILNTINFKKSMKYNPFAYLRSEKDILKLVQTIIANTKGEGEKAGEDFWVK AEKLYYTALIGYIFYEAPREEKNFATLLDMIDASEVREDDETYMNPIDRLFEALEKREPT HFAVKQYKKYKLAAGVIELRRTLHHYLSERCFA >gi|289656136|gb|ADCS01000054.1| GENE 3 826 - 990 192 54 aa, chain - ## HITS:1 COG:no KEGG:Ccur_08100 NR:ns ## KEGG: Ccur_08100 # Name: not_defined # Def: hypothetical protein # Organism: C.curtum # Pathway: not_defined # 1 54 1 54 54 68 100.0 6e-11 MEEEKRVIKEPQHKQLIMDIGKTKYTVNLHFKQGTGETYKDKILKLIKRETEKI >gi|289656136|gb|ADCS01000054.1| GENE 4 1098 - 1712 559 204 aa, chain - ## HITS:1 COG:no KEGG:Ccur_08110 NR:ns ## KEGG: Ccur_08110 # Name: not_defined # Def: hypothetical protein # Organism: C.curtum # Pathway: not_defined # 1 204 2 205 205 365 99.0 1e-100 MESRPEFDKITSFDEFTKYYWYREELSQICKSLGLEYRGTKQELNYIIEQYFKGNLIKKS SIKNEKKQVENITLDTPLLECGFSFNAKFREYFTVLTGISPFKFTADMATVWRKVKREND LSFTIQDMLKVYYGKSDYAKYDNSVCQWNQFLKDFCADENSCNYSNKLKVASILWKEVRN SRNEKIYSKNLLTEYADKIKEYCK >gi|289656136|gb|ADCS01000054.1| GENE 5 1728 - 2147 356 139 aa, chain - ## HITS:1 COG:no KEGG:Apar_0543 NR:ns ## KEGG: Apar_0543 # Name: not_defined # Def: hypothetical protein # Organism: A.parvulum # Pathway: not_defined # 1 139 1 139 139 243 95.0 2e-63 MDEREKIIRLWFDMWLTQQDLGIDDIFLDDVIYIESWCPKYENRQTVKHWFNEWNTRGKV LAWDIKQFFHKDNQTIVEWHFKNKMNEGKVEEFDGISLIVWTADNKIKALKEFGCNCNNY NPYKESETPLFRDEKVNWF >gi|289656136|gb|ADCS01000054.1| GENE 6 2209 - 3669 1181 486 aa, chain - ## HITS:1 COG:AGl66 KEGG:ns NR:ns ## COG: AGl66 COG0507 # Protein_GI_number: 15890136 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 1 261 12 261 1277 179 39.0 1e-44 MAIYHLCIKIISRGKGKSAVAASAYRSGEKIKNEYDGIVHDFTRKGGIAHTEILLPQNAP QAFLDRGTLWNSVEKIEKSKNSQLAREIEIALPKELNREKQIELVREYVKDNFVNVGMCA DIALHDKNDGNPHAHILLTMRPLNEDTTWGAKSKKEYILDENGEKVKLKNGNYKTRKINT TDWNEQEKAEQWRKAWADITNKYLEENSIQEKVDHRSYQRQGIEQIPTIHLGVSATQMEK KGIATDRGNINREIKHQNMILREISRRIKALLNWIRGIGKEEKTENENTKSTLTPKENLL SVLENLIRKNAENHNTDLEKYIESYQLLKEKNITSLSELKGNILALRDKNYKTTRVLKDV EKKVDDNTKLIEQAEKYLKHKDIYKAYTKLKKSKQEYFYNEHVAELILFESAKKYLKEHL GENKTLAISKWKSELITLKKEKKSLYNQILEIREEVEQAEKVKTCIEQLQEHSKQLTQVK WNELDL >gi|289656136|gb|ADCS01000054.1| GENE 7 3907 - 4062 77 51 aa, chain - ## HITS:0 COG:no KEGG:no NR:no KDFTKDEFYQLITFPKIKEEVNQKILKIIEKREQSENRNTGTQEEEMETEE Prediction of potential genes in microbial genomes Time: Fri May 27 07:48:49 2011 Seq name: gi|289656135|gb|ADCS01000055.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.55, whole genome shotgun sequence Length of sequence - 7589 bp Number of predicted genes - 9, with homology - 9 Number of transcription units - 3, operones - 1 average op.length - 7.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 128 - 448 145 ## SDEG_1343 hypothetical protein - Prom 485 - 544 5.7 - Term 475 - 517 6.5 2 2 Op 1 . - CDS 582 - 1334 840 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) 3 2 Op 2 . - CDS 1403 - 3073 1156 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs 4 2 Op 3 . - CDS 3116 - 3685 527 ## CD0412 putative conjugal transfer protein 5 2 Op 4 . - CDS 3675 - 4406 408 ## COG3645 Uncharacterized phage-encoded protein 6 2 Op 5 . - CDS 4403 - 4888 553 ## SEQ_0732 hypothetical protein 7 2 Op 6 . - CDS 4891 - 5919 951 ## CDR20291_1742 putative conjugative transposon protein - Prom 5945 - 6004 3.6 - Term 5948 - 5982 1.2 8 2 Op 7 . - CDS 6009 - 6293 391 ## SEQ_0730a hypothetical protein - Prom 6390 - 6449 7.4 - Term 6887 - 6952 1.8 9 3 Tu 1 . - CDS 6953 - 7483 557 ## TDE0330 CRISPR-associated Csn2 family protein - Prom 7526 - 7585 4.2 Predicted protein(s) >gi|289656135|gb|ADCS01000055.1| GENE 1 128 - 448 145 106 aa, chain - ## HITS:1 COG:no KEGG:SDEG_1343 NR:ns ## KEGG: SDEG_1343 # Name: not_defined # Def: hypothetical protein # Organism: S.dysgalactiae # Pathway: not_defined # 1 106 1 106 106 95 85.0 4e-19 MKNIDKKILMAEEEIKQLQNKRKKLISQQKQEERKKRDRRLYEKGAVFESIFTESKDFTK DEFYQLITFPKIKEEVNQKILKIIEKREQSENRNTGTQEEEMETEE >gi|289656135|gb|ADCS01000055.1| GENE 2 582 - 1334 840 250 aa, chain - ## HITS:1 COG:CAC1470 KEGG:ns NR:ns ## COG: CAC1470 COG0596 # Protein_GI_number: 15894749 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Clostridium acetobutylicum # 1 217 1 227 255 66 26.0 5e-11 MNIHEFGKGNEQAILLIHPSVVRWDYFEHLIPLLKNKYHLIIPALPGYDSEDESDFTSIE KIAAELNEWLQAEEIAELYAVYGCSMGGSVALMVTLGQLIPIRHCIMDGGITPYQLPWLV TRFIALRDYLMMMLGRTGGVRLLEKAFATNEYSKEDLQYVADVLKCSSRKTLWRTFDSCN NYKIPQPIPKVDTQMHYWYADGEEKERKLDIAYMNQHFPQTEFKVLPKLGHAGLVLLKPD LFVTMINELF >gi|289656135|gb|ADCS01000055.1| GENE 3 1403 - 3073 1156 556 aa, chain - ## HITS:1 COG:lin1623 KEGG:ns NR:ns ## COG: lin1623 COG1961 # Protein_GI_number: 16800691 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Listeria innocua # 10 307 9 301 301 295 51.0 1e-79 MSNTKRTGQTALYERLSRDDEMQGESNSITNQKQLLESYAKRNGFVNIYHYTDDGVSGTT FDREGFQKMIKAVEENKVSTVIVKDMSRFGRDYLKVGFYTEILFKEKGVRFIAINNGIDS EKQAESDFTPFLNIMNEWYARDTSRKIQSIFRARMEEGKRVSPSVSYGYYRNPKNKQELL VDKESSKVVKRIYRLVIEGYGVTQIADILTKDKILIPSAYAEIHHPENNHSSKKRGIEDP YFWTPTTVGYILEKREYMGHTVLGKTICLDYKTKKRRKAKEDELIIFKNTHEAIIDEETW NNAQRLRKTVRRSPKYGTTSHPFTGLLICSDCGGKLSYREPAEHKEKKYDCDYCFVCQHY RHRKGTCSMHYIKVKTVNEILLKSIKEITDFAKEDKQEFLKVMNKLSDEKREEKYQEDKE KLEKLSSRNEELTTLITKLYEDHALGKIPVKHFDRLFNTYDTEQQDLEKQIQYFEQEIES YHQRKVDTDKFLKMIEKYTDIDELTVPMINEYIEKVVVHEATGGRKGKDRKQQVDVYFNF IGNCQVPQKVDMEKRA >gi|289656135|gb|ADCS01000055.1| GENE 4 3116 - 3685 527 189 aa, chain - ## HITS:1 COG:no KEGG:CD0412 NR:ns ## KEGG: CD0412 # Name: not_defined # Def: putative conjugal transfer protein # Organism: C.difficile # Pathway: not_defined # 1 186 1 186 594 348 88.0 5e-95 MINKILKDIKGLFKVQDKAKFAKQNIPYLAFFYLGNIFSHHVRSYTGGDVIDRIFQGILE LNTMSFLPSIYLVDILTGIGVAAIIKFIIYTKGKNAKKFRQGREYGSARWGNKKDIEPYM DEKFQNNILLTQTERLTMNGRPANPKYARNKNVLVIGGSGSGKTRFFVKPNLMQMHSSYC VTDPKGLTS >gi|289656135|gb|ADCS01000055.1| GENE 5 3675 - 4406 408 243 aa, chain - ## HITS:1 COG:SPy0980_2 KEGG:ns NR:ns ## COG: SPy0980_2 COG3645 # Protein_GI_number: 15674990 # Func_class: S Function unknown # Function: Uncharacterized phage-encoded protein # Organism: Streptococcus pyogenes M1 GAS # 125 234 1 123 125 98 45.0 1e-20 MSSLITFENMEFGKLTVMEKDGEFFFIGKEVAEKLGYANTRDALVRHVDIDDKADVVFHD GRQRRNMVSINESGLYALILSSKLPQAKDFKRWVTTEVLPSIRKNGGYIKNQEKMSNEEI LANAVLLANHLIAEKEKIIEDLEPKAKYFDELVNNHLLTNFRNTAKELHIPQKAFIQFLI DQNLIYRDKKNRLLPYAKNNKGYFEVKEWCRNDNGAVGIQTFVTPKGRNYLLLLIGGEKT HDK >gi|289656135|gb|ADCS01000055.1| GENE 6 4403 - 4888 553 161 aa, chain - ## HITS:1 COG:no KEGG:SEQ_0732 NR:ns ## KEGG: SEQ_0732 # Name: not_defined # Def: hypothetical protein # Organism: S.equi_equi # Pathway: not_defined # 1 161 1 161 161 152 88.0 3e-36 MINEEIARKTLSLEVKAAKVTGKLLLNLLKKLIKEAEKLGGLEKLVKVNGNQVKLKDMVK KGQLEEIPVEEAELKELKKELNKYGVKFSVMKDKETGKYAVFFQAKDMKMMEKAFKNALA TSERKAERKESIHKNIEKFKEMAKNTVSKDKVKNKQKEQSL >gi|289656135|gb|ADCS01000055.1| GENE 7 4891 - 5919 951 342 aa, chain - ## HITS:1 COG:no KEGG:CDR20291_1742 NR:ns ## KEGG: CDR20291_1742 # Name: not_defined # Def: putative conjugative transposon protein # Organism: C.difficile_R20291 # Pathway: not_defined # 3 342 1 340 340 469 72.0 1e-131 MSMYLFDEQPIVANKTLAREIGLNEALILQQINYWIEINKKSGNNFYDGRCWTYNSIRAW QEKDFDYMSFDTVKRTFAKLEKAGFLLVGNYNKDPRDKTKWYTINTEKLEELYAEIENKK KKEELQALEKAVPNALGQNAPMEKCKIHQCTSADCTNATEQNLPMQNGNMPQPLPENTTN NSSKITTDISSYNSTHHSVIDAEYSEPRKRMDGEAEIENKNIYQNCLDELRTQTGYYEHL ELGNKFIVKDFDEILKILADIMILDDREFVTINQTKLPAHIVKERFRKLKSEHLEYLSDV IKENEYKIRNIRAFVLTAAYNAPSGIDAHYSALVSYDMRGGY >gi|289656135|gb|ADCS01000055.1| GENE 8 6009 - 6293 391 94 aa, chain - ## HITS:1 COG:no KEGG:SEQ_0730a NR:ns ## KEGG: SEQ_0730a # Name: not_defined # Def: hypothetical protein # Organism: S.equi_equi # Pathway: not_defined # 1 94 1 93 93 86 75.0 2e-16 MRWIIKIILFPISLLLSILTAFLTFLLSVGTAILYLLMLMCVFVAIGSFFMLHDTKAAIE ALILGFLLSPYGIPMIGVAIIAFIQGINEAIKSI >gi|289656135|gb|ADCS01000055.1| GENE 9 6953 - 7483 557 176 aa, chain - ## HITS:1 COG:no KEGG:TDE0330 NR:ns ## KEGG: TDE0330 # Name: not_defined # Def: CRISPR-associated Csn2 family protein # Organism: T.denticola # Pathway: not_defined # 1 176 50 224 224 71 29.0 1e-11 MSEDDREILISKNVDIIIDFLNTNPNNKKVINRLLSELTENAKIEYEKLNIIINQLNIFF DDLLFSGDFELEREDDIKVEELIKLGGFYFNFDYGNTIDRLISYMVVLRKYIGIKLFILI NIEKILTVCEMKEFFEYCIMNEFKVLFIESGKADYENLDLKYIKRYIIDEDLCDLY Prediction of potential genes in microbial genomes Time: Fri May 27 07:49:24 2011 Seq name: gi|289656134|gb|ADCS01000056.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.56, whole genome shotgun sequence Length of sequence - 51838 bp Number of predicted genes - 50, with homology - 47 Number of transcription units - 17, operones - 11 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 2 1 Op 2 4/0.000 - CDS 337 - 657 330 ## COG3512 Uncharacterized protein conserved in bacteria 3 1 Op 3 5/0.000 - CDS 654 - 1529 758 ## COG1518 Uncharacterized protein predicted to be involved in DNA repair 4 1 Op 4 . - CDS 1581 - 5723 3359 ## COG3513 Uncharacterized protein conserved in bacteria - Prom 5775 - 5834 8.0 + Prom 5714 - 5773 6.3 5 2 Tu 1 . + CDS 5851 - 5961 98 ## + Term 6098 - 6135 -0.9 - Term 5983 - 6025 8.0 6 3 Op 1 . - CDS 6034 - 8220 2283 ## Slip_1309 hypothetical protein 7 3 Op 2 . - CDS 8217 - 8858 553 ## gi|299144354|ref|ZP_07037434.1| conserved hypothetical protein - Prom 8891 - 8950 3.4 - Term 8904 - 8940 5.1 8 4 Op 1 21/0.000 - CDS 8952 - 10376 1693 ## COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) 9 4 Op 2 . - CDS 10376 - 11824 1505 ## COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases 10 4 Op 3 . - CDS 11835 - 12116 423 ## Acfer_1762 glutamyl-tRNA(Gln) amidotransferase, C subunit 11 4 Op 4 5/0.000 - CDS 12106 - 14100 2504 ## COG0272 NAD-dependent DNA ligase (contains BRCT domain type II) 12 4 Op 5 . - CDS 14105 - 16297 1913 ## COG0210 Superfamily I DNA and RNA helicases 13 4 Op 6 . - CDS 16309 - 17004 715 ## COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 - Term 17011 - 17040 1.4 14 4 Op 7 . - CDS 17041 - 18219 1168 ## gi|299144361|ref|ZP_07037441.1| putative S-layer homology domain protein - Prom 18271 - 18330 7.7 - Term 18315 - 18344 1.4 15 5 Op 1 1/0.000 - CDS 18356 - 20407 796 ## PROTEIN SUPPORTED gi|227890890|ref|ZP_04008695.1| 30S ribosomal protein S1 16 5 Op 2 3/0.000 - CDS 20388 - 20966 569 ## COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase 17 5 Op 3 . - CDS 20956 - 21606 622 ## COG0283 Cytidylate kinase - Prom 21626 - 21685 3.4 - Term 21611 - 21644 2.4 18 6 Tu 1 . - CDS 21687 - 21821 76 ## - Prom 21841 - 21900 4.8 - Term 21854 - 21897 4.0 19 7 Op 1 8/0.000 - CDS 21905 - 22738 929 ## COG1512 Beta-propeller domains of methanol dehydrogenase type 20 7 Op 2 . - CDS 22750 - 23304 666 ## COG1704 Uncharacterized conserved protein 21 7 Op 3 7/0.000 - CDS 23306 - 24481 1307 ## COG0301 Thiamine biosynthesis ATP pyrophosphatase 22 7 Op 4 . - CDS 24486 - 25631 1307 ## COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes - Prom 25689 - 25748 11.1 + Prom 25658 - 25717 7.5 23 8 Op 1 . + CDS 25742 - 26665 541 ## COG3359 Predicted exonuclease 24 8 Op 2 . + CDS 26719 - 27414 750 ## COG0813 Purine-nucleoside phosphorylase 25 8 Op 3 . + CDS 27442 - 28032 522 ## COG1555 DNA uptake protein and related DNA-binding proteins + Term 28119 - 28190 16.1 + TRNA 28097 - 28171 81.7 # Trp CCA 0 0 + TRNA 28203 - 28279 95.7 # Ile GAT 0 0 - Term 28320 - 28352 4.0 26 9 Tu 1 . - CDS 28370 - 28978 730 ## COG3601 Predicted membrane protein - Prom 29000 - 29059 4.1 - Term 29005 - 29032 -0.9 27 10 Op 1 . - CDS 29207 - 29923 505 ## FMG_0111 hypothetical protein 28 10 Op 2 1/0.000 - CDS 29938 - 31332 1514 ## COG1376 Uncharacterized protein conserved in bacteria - Prom 31352 - 31411 3.9 29 10 Op 3 . - CDS 31438 - 32157 648 ## COG1408 Predicted phosphohydrolases 30 10 Op 4 . - CDS 32229 - 32966 917 ## COG0682 Prolipoprotein diacylglyceryltransferase 31 10 Op 5 . - CDS 32956 - 33618 912 ## COG0274 Deoxyribose-phosphate aldolase 32 10 Op 6 . - CDS 33608 - 34210 595 ## COG0655 Multimeric flavodoxin WrbA 33 10 Op 7 . - CDS 34211 - 34951 1072 ## COG0217 Uncharacterized conserved protein - Prom 34973 - 35032 8.9 - Term 35051 - 35084 1.5 34 11 Op 1 20/0.000 - CDS 35128 - 35307 232 ## PROTEIN SUPPORTED gi|227484646|ref|ZP_03914962.1| ribosomal protein L32 35 11 Op 2 1/0.000 - CDS 35310 - 35834 183 ## PROTEIN SUPPORTED gi|170758590|ref|YP_001787770.1| ribosomal protein L32 family protein - Prom 35857 - 35916 7.5 - Term 35890 - 35931 6.7 36 11 Op 3 . - CDS 35945 - 37147 1699 ## COG0282 Acetate kinase - Prom 37173 - 37232 14.9 + Prom 37132 - 37191 10.6 37 12 Tu 1 . + CDS 37225 - 38400 952 ## COG1323 Predicted nucleotidyltransferase + Term 38521 - 38576 7.5 - Term 38517 - 38552 5.3 38 13 Op 1 5/0.000 - CDS 38565 - 40397 2038 ## COG0747 ABC-type dipeptide transport system, periplasmic component 39 13 Op 2 49/0.000 - CDS 40452 - 41372 1163 ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 40 13 Op 3 6/0.000 - CDS 41388 - 42350 1091 ## COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 41 13 Op 4 44/0.000 - CDS 42350 - 43291 724 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 42 13 Op 5 . - CDS 43291 - 44295 624 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 - Prom 44343 - 44402 11.2 + Prom 44477 - 44536 12.4 43 14 Tu 1 . + CDS 44559 - 46238 1647 ## COG1164 Oligoendopeptidase F + Term 46244 - 46271 0.1 - Term 46227 - 46264 5.7 44 15 Tu 1 . - CDS 46267 - 49005 3338 ## COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase) - Prom 49028 - 49087 7.7 - Term 49442 - 49499 11.5 45 16 Op 1 . - CDS 49555 - 49776 258 ## CD0410 hypothetical protein 46 16 Op 2 . - CDS 49773 - 50459 708 ## SEQ_0730 replication initiation protein - Prom 50567 - 50626 8.1 - Term 50552 - 50591 5.1 47 17 Op 1 . - CDS 50641 - 50862 266 ## gi|299144389|ref|ZP_07037469.1| conserved hypothetical protein 48 17 Op 2 . - CDS 50897 - 51433 592 ## Mbar_A1092 hypothetical protein 49 17 Op 3 . - CDS 51462 - 51632 130 ## HMPREF0573_11777 membrane protein 50 17 Op 4 . - CDS 51541 - 51822 105 ## Predicted protein(s) >gi|289656134|gb|ADCS01000056.1| GENE 1 1 - 340 261 113 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|299144349|ref|ZP_07037429.1| ## NR: gi|299144349|ref|ZP_07037429.1| putative CRISPR-associated protein, SAG0897 family [Peptoniphilus sp. oral taxon 386 str. F0131] # 23 113 1 91 204 138 98.0 9e-32 MIKIVNLDWNMELDFDKSNIIKLYIEDKKYFRKIITELNEQINGNIGKFIMSEDDREILI SKNVDIIIDFLNTNPNNKKVINRLLSELTENAKIEYEKLNIIINQLNIFFDDL >gi|289656134|gb|ADCS01000056.1| GENE 2 337 - 657 330 106 aa, chain - ## HITS:1 COG:SPy1048 KEGG:ns NR:ns ## COG: SPy1048 COG3512 # Protein_GI_number: 15675043 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 1 106 1 106 113 97 41.0 4e-21 MSYRFMRVLVMFDLPILTSEQKREYREFRRFLIKSGFLMLQESVYCKLVLNKTTADTVLS NIEKNKPPEGIVQVLVITEKQFSNMKLIVGNLKKDIIDTDERIVII >gi|289656134|gb|ADCS01000056.1| GENE 3 654 - 1529 758 291 aa, chain - ## HITS:1 COG:SPy1047 KEGG:ns NR:ns ## COG: SPy1047 COG1518 # Protein_GI_number: 15675042 # Func_class: L Replication, recombination and repair # Function: Uncharacterized protein predicted to be involved in DNA repair # Organism: Streptococcus pyogenes M1 GAS # 2 277 3 278 289 208 39.0 1e-53 MGWRIIKIDSRSKLDYKMNYLVCRKDGETLRIFIDEISVLIVESTSISITAALMVKLIEN KIKVVFCDSKRNPSFELMPYYGSHDTSLKIRNQFKWSEFNKQLVWTSIVKNKIKNQMTVL KENKLSEYLLLKEYIENIEFNDETNREGHAAKVYFNALFEREFSRNDDSIINSELDYGYS IILSIVNREISIQGYITQIGIHHNNIFNDFNLGSDLVEPLRIFVDRKVITMNHDCFSRDE KYEIISILTDYVKINNKIYTLNDAIGIYCRSVLEAINEGDISLISYIEDVG >gi|289656134|gb|ADCS01000056.1| GENE 4 1581 - 5723 3359 1380 aa, chain - ## HITS:1 COG:lin2744 KEGG:ns NR:ns ## COG: lin2744 COG3513 # Protein_GI_number: 16801805 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 10 1207 5 1178 1334 406 32.0 1e-112 MNTKFNDVDYYVGLDIGTSSVGWAVTNEKYELLKFNNHKMWGSRLFEEASTAQDRREHRS NRRRLERRKYRLDLLEELFVEEINKIDPEFFIRLRESKFHFEDRSLKNTFILFNDKMEGG YNDKVFFSKYPTIYHLRSALINGNKEDVRAVFLAIHNILKNRGHFLLAGNDINISLSLND TLTDLFEYLKIHLGIEVEFENKLKDIEKIALDKNLSKSDKQKKIVQLLETDYKKQLADVF KLSLGLTANMENIFGKENEQGLEFINAENKIKKIQFDSSYEENIAEFDQFYGEYFEIIDI CKKIYDAISLSQILVDGKGLSESKVLSYEKHKEDLKLLKKVLKNIDKAYDNKGEDRLVYK VLKEDKDKGTNYVNYSKLSNNGTATTKEEFYKFLSKNLDLKKFGKLNKEDIETLDYINSE ILLGRFLPLQKEKINGVIPYQLQMKELTQILNNASKYLPFLNKIEDGMTVKDKIISLIKF RIPYYVGPLNEYNRIENGNGFAWIEKKKNEKIFPWNFNDVVDIEKSAEKFINNLTNKCTY IKEETVLPKNSIIYSKFMVLNELNNLQYGNKKLDIELKMKMYTDLFLEKKDNRKVTEKRI LEYFRINGINDGKEKLTGLNNEIHADMKSYRDMCEIMGENFNINVAENIINWITVFHGEK KILINKIKNVYGKMFNDEQISKLSKLNYSDWGRLSKKLLTDIKCYIDADGINFPVSILEA MEVSNKNLMELLSNKYEFISCIDDINNKYFGDRDISASELIDELYVSPAVKRGIWQSVRI LEEIVSIIGHNPKKIFIEMTRHNEEKVQKSSRRHNLEELYKAIRKDPEYVELIKEFDSTT DTDSFKIKKLYLYFMQLGKCAYSKEKIDFDKLFTDSYDIDHIYPRSKTKDDSIHNNLVLV KAKYNREKTDVYPIDINIQKNMNSFWNFLYTKKFITEEKYKRLIRTSDLTDEELAKFISR QLVETSQSTKATAEVLKQIYGDSDICYVKAENVSDFRYGSSRQKDKNDIQKLFVKCREVN HFHHAKDAYLNIVVGNVYDVKFTKNPVNFIKKNKMGNKSNYSLNHMFCFDVERNGYKAWD SSETIKTVGRMMKSNDVRITKHVHPTRGELYDATIYKAKIAKTGSYMPLKSSKNTPLSDV TKYGGYTKIKIAYYSVYKYKFSDKNLIKTEIRLIPIPIYLSKNDDDIKEYVKNYLNDRVN SKLIDFTKIYDKLYVNSLIKINGYLYYLGGKTNDRVWIDNAVSIVLDDKIEYLIKRISND IKYGYEINVSDDELMDIYESLAEKANKKIFYNRLSDFEKIFSNMDVKKKFVKLEKNDKCR VLLQLLNVLTDSQTTYKLEMVGLKHSRSNIGMKISNLEEFKVINSSITGLYSNEIDILNI >gi|289656134|gb|ADCS01000056.1| GENE 5 5851 - 5961 98 36 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MYNIFKVVFRPILNYTQVQIKIYSIGRKAVRCGQFT >gi|289656134|gb|ADCS01000056.1| GENE 6 6034 - 8220 2283 728 aa, chain - ## HITS:1 COG:no KEGG:Slip_1309 NR:ns ## KEGG: Slip_1309 # Name: not_defined # Def: hypothetical protein # Organism: S.lipocalidus # Pathway: not_defined # 62 723 50 712 721 342 33.0 3e-92 MKKRYILIALLITLLCVGCKKDKDASGTNQNKTDKNAEVVKKEDISFLDEYIEDIIVPEF KEIEIVAKVEDYKIEKNLKNVYNYGKGPYEYMSFKGKQLKALEENGFVVGGNGYSDQPFQ IYEVNEYTYVPSFVTTDSVLHLYHIFYDSLLREVETKQFLPNFEKLIPILLEKSIADYEN ADDESVKNSALKNIAYFKVAGELINLKTDIEIPQAAEKIAKEEMKLIKEGSISDSNLVNA KVDYSQFKVRGHYTRTKELEKYFKVIMLFSQEAFFIDNDGIIDKDNLVQAMLITKNLFEN KENYKLWEDVNSSLNFLVEKSDDLDVLTFAKTMYSNYGKDISLEKIKNEKILEDFYNDLS KLSNPAIQGYKGKSFRFMPQKAVIDNVLMQNLVDIATEDKPSYRPIYSGVDVMAVLGNKT AEELVLNNENNFKWDKFKEKYEYTKELEKHIDEKSWMSNLYRGLLWTLKGFNQDFAEGYP KFMQSKAWKLKDLNTALASWAELKHDTVLYGKQVGAEMGGGDDSEFPVNYVEPNVKIYER LLWLMDFAGQNLKHRNMLSEATEKNLNNFKDMVQFLLDCSVKELREETLTKEENERIFYI GGEMENIFVKFIDEKAAYYYEIETEADKDMACIADIMKVAKNSVGIPEGKYLEVGSGHAS LIYVIYKVNGKLYLGEGAVMSYYEFLSDDRLTDEQFQEKLNSFEKEDYPERPDWISEFVK EYEYILKP >gi|289656134|gb|ADCS01000056.1| GENE 7 8217 - 8858 553 213 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|299144354|ref|ZP_07037434.1| ## NR: gi|299144354|ref|ZP_07037434.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 213 12 224 224 376 100.0 1e-103 MKKRKIGIILLILSALVFLKFKNTLYDSIAIKNNEGEEVTVNVYKNIFSKYANVIEIVSE NRKEKIVFSGKKKINIWKLDAGDVDGDGIDEIALGVYKKSPHHRVMANRVFLYNISGLEL KPKFRASRLGLPFTEFLLYDIDEDGAFEIISIEEKDNYKFIAAYNYKNFSIYRDYISHGY EKLAGLDKRSTLSVNADGKNKKIELKGKEIELK >gi|289656134|gb|ADCS01000056.1| GENE 8 8952 - 10376 1693 474 aa, chain - ## HITS:1 COG:CAC2669 KEGG:ns NR:ns ## COG: CAC2669 COG0064 # Protein_GI_number: 15895927 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) # Organism: Clostridium acetobutylicum # 1 474 1 475 476 493 52.0 1e-139 MSYKTIVGLEIHVELSTKTKAFCSCENQFGGEPNTRVCPICLGLPGGIPVLNKNVVNYTI MAGLALNCNIAKKSKFDRKNYFYPDLTKGFQITQDDMAICNEGYIEIETEEGSKKVGIYK IQMEEDTGKSLHTEDNSTLMDYNRCGVPLIEIVSKPEMNSGKEARLFLEKLKNTLIYIGV SDCKMEEGSLRCDVNVNVVDEETGKKTAVTEVKNLNSFRGVEKAIDFEVQRHIALLQNGE NEIRTTRRWDDANNETVLMRVKYTVADYRFAPEGDLPPVILTDELIEKIKDELPELPQAK KERFMREYKIPEYDAEVLTSTKELSKYYEEVAKNFDDSIMVSNWIMTEVLRRVENIDEEF KLPFEPADFVDLLKAVKSGKINNNAGKKVLREMFETSKKPEDIIKEQGLVQISDTSEIDA LVDKVLSDNPQSIEDFKAGKDRAFGFLVGQVMKASKGKANPQLVNKLLTEKLNK >gi|289656134|gb|ADCS01000056.1| GENE 9 10376 - 11824 1505 482 aa, chain - ## HITS:1 COG:CAC2670 KEGG:ns NR:ns ## COG: CAC2670 COG0154 # Protein_GI_number: 15895928 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases # Organism: Clostridium acetobutylicum # 1 482 1 477 485 421 45.0 1e-117 MKLTKLKAHELIDGYKNRDFSCEEVTREYLSVIEREEADLNAYVTVCDESAIKEAKEVDR KFMNREEVGILSGVPIGVKDNIAVKNILMTCSSKMLENFIVPYDSVISERIKSNGGVIIG KTNMDEFAMGASTKTSYYGVSKNPLDRTLVSGGSSGGSASALAGEECALAVGTDTGGSTR QPASFCGLVGIKPTYGSIPRYGVATMANTFDQPGAFGKDVEDAVLLLKALEGRDERDATS VGNPSIREEFNFKNTDEVISYLKNMKIAIPSLYMNMKLNDRVKADFDKAINVFKNAGAII DIVDMSSLKYVIETYHILVNGEIAPNMARFDGLRYGHRTENYDTFEEMYRKSRAEGFGDE VKRRIMIGTHILSLDLAEDYYYKALKVRTLIKNEFDEVFKSHNLVMCPTVPVLPFKIEDN MSPVEMYQADLFTIPANMTGCPSISIPMPKIDGLSVGIELTANRFKDNEMIKAALGFERS VK >gi|289656134|gb|ADCS01000056.1| GENE 10 11835 - 12116 423 93 aa, chain - ## HITS:1 COG:no KEGG:Acfer_1762 NR:ns ## KEGG: Acfer_1762 # Name: not_defined # Def: glutamyl-tRNA(Gln) amidotransferase, C subunit # Organism: A.fermentans # Pathway: Aminoacyl-tRNA biosynthesis [PATH:afn00970]; Metabolic pathways [PATH:afn01100] # 4 93 6 95 95 62 36.0 6e-09 MERSEIKHIADIAQIDFTDDELDKFQENFSETFELIDNIRKIDTENLETTFQVNDTVNNL REDEAHASLSQEDAIRNTLDEKYGYFKIIKFVE >gi|289656134|gb|ADCS01000056.1| GENE 11 12106 - 14100 2504 664 aa, chain - ## HITS:1 COG:CAC2673 KEGG:ns NR:ns ## COG: CAC2673 COG0272 # Protein_GI_number: 15895931 # Func_class: L Replication, recombination and repair # Function: NAD-dependent DNA ligase (contains BRCT domain type II) # Organism: Clostridium acetobutylicum # 4 658 8 666 669 643 51.0 0 MEIIDRIRELIDKVNKLNYHYYTLDDPIVSDAEYDELYYELKKLEDENKIILANSPTTRV GGEVLSKFEKHTHIAPLYSLDKAQSYEELRAWHERNLKALQSYRASGKNIENLKYVVELK FDGLTINLTYEDGYLKMASTRGNGFIGEEILPQIKTIYSIPLEIPYKGLMEVQGEGLMPL SSLEKFNRTHDEQLKNARNAAAGALRNLDPKVTKSRNLTAFFYNVGYIKDDRFRDDSEMK KFLRDNGFRVNENNYICKNLDEVIEKIEKIGSIRESLDILIDGVTIKINDMETRDLLGFT NKFPRWAIAYKFEAKEVSTKLLDVVWNVGRTSKVTPSAILQPVEIGGVTIKKATLNNYDD ILKKKIRINGRVLLRRSNDVIPEILGALPTEEETIEIEMPKYCPSCGTELFKDGVHIFCP NTLSCVPQLVSRLTHFASRDAMNIEGLSEMTISKLLNELDIREIPQIYELEKQDLLKLEG FKEKRANNLISAIADSKIRPLPNFIYSLGINNVGIKTAYDLANKFKDFDLLRHAKYDELV DIDDIGPITAKEIVEFFNDKHIEKSIDRLFELGVSPKFEESTDEETYFKDKRIVITGTLS IPRKELENMLIKFGAKISSSVSKNTDFVIAGEDAGSKYDKAINLGIEIIDENKLRELLGG KYGA >gi|289656134|gb|ADCS01000056.1| GENE 12 14105 - 16297 1913 730 aa, chain - ## HITS:1 COG:SA1721 KEGG:ns NR:ns ## COG: SA1721 COG0210 # Protein_GI_number: 15927479 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases # Organism: Staphylococcus aureus N315 # 6 726 8 725 730 620 46.0 1e-177 MIYRDLNNKQSEALLKTEGPVLILAGAGSGKTKVVTNKIAYLIDEKRVYPSSILAITFTN KAANEMKERVAKLIDVNVDAMWIGTFHSICLRILRRNIERIDYSSNFSIYDRDDQNTVIR DCIKELNLNKEMYKNKSIIAKISELKNQDIKPDEFINANYMDFFNRNVGEIYNLYEKKLK DNNALDFDDILIKTVELFENNEDIKNYYQDKFKYIFVDEYQDTNMIQYRLIKLLCNASPN LTVVGDNDQSIYKWRGADISNILNFEKDFKDAKVILLEQNYRSTSKILNVANSVIKNNGN RKDKNLWTDNGVGEDVVYRVFRHSQEEEQAVTTKMLQLNYKGHAFSDMAILYRTNAQSRG FEEALIREKIPYKIVGGLRFYDRKEVKDIIAYLKVIQNTADDVAINRIINVPKRGIGAQS IEDMSKYADENFISLFSVIDGIEENEQLNLRSKKNVKEFANLINLLRLNAQELSVSKLIE KVIYESGYISDLEAENTVEARSRIDNIKELISTAVDFERNNPLGNLEEFLSGISLLSDVD KTSPDASAVKLMTIHSAKGLEFKIVFLVGMEEGLFPTSRALDDEEDIEEERRLCYVGVTR AEKYLYISSSQTRTLYGKTSPCLESRFIKEMEDTITKIIPEKETYESKKNLVEVSDFISY NANRVKSVPKKEKKTDVDVKVGDKIVHKKWGEGMIVSKTSKNDDFEIVISFEGKGLKKLM LSLAPISLVK >gi|289656134|gb|ADCS01000056.1| GENE 13 16309 - 17004 715 231 aa, chain - ## HITS:1 COG:FN0725 KEGG:ns NR:ns ## COG: FN0725 COG1179 # Protein_GI_number: 19704060 # Func_class: H Coenzyme transport and metabolism # Function: Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 # Organism: Fusobacterium nucleatum # 4 231 3 234 234 216 51.0 3e-56 MEIFNRSEMVIGRENINRLQNSSVLVFGLGGVGGSLCEALIRAGIGKIGIVDRDIVDVTN INRQVIATQNTVGMKKTDAMYDRLISINPMVKIEKYHINLNEDTISQFNFSNYDYIADAI DTVSVKILLAKICYENNHKLISAMGTGNKINPAMLEVSDIKKTSVCPLARVMRRELKNRG IEKLKVVYSREEPINTKFKLEKASIPGSMSFVPPVCGIIMASEIVKELIVL >gi|289656134|gb|ADCS01000056.1| GENE 14 17041 - 18219 1168 392 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|299144361|ref|ZP_07037441.1| ## NR: gi|299144361|ref|ZP_07037441.1| putative S-layer homology domain protein [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 392 1 392 392 682 100.0 0 MTKNTKKIFAATLIGAVLISNTVYAKAFSDVEQNGAYSWVYSSLDKLSNRGVFGGYPDNT FKPYRAVSFLEVMQVIKNIKNPSAEELKASRDKYEAEALQQGVPNWALEAVCYNLSINSI TINTIKSANEKGFLKAVNTVYPDRNSVTVYFGRAFGFDGNGDRSLLKHSDLDNVAEMTKG YLANLVGASIYSDTGSDGKFNGSSFIRRAEVAVIADRALTYLESNSKNDKKDDSELKIDD VSGIVSNVVAESAQQYGSITISDKEYKMNIQNVVVVDPNGLYNPPELSTLKDKNVSAKIK DGEIIYITILSSNASSTVNTNFNIVEMTGKVISITSESDGNLVEIRVLVSDSKHVESGSV ITIKTKNSYKLDQILNIKGNIVDSKLANIEVN >gi|289656134|gb|ADCS01000056.1| GENE 15 18356 - 20407 796 683 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227890890|ref|ZP_04008695.1| 30S ribosomal protein S1 [Lactobacillus salivarius ATCC 11741] # 276 678 1 391 397 311 43 6e-84 MELMEIKVTVAKNAGFCGGVKRAVKLAIDNADEGVYSLGELVHNRRVVDDLRKLGVKQID NVDGIKNSKVIIRSHGVHKSVIDKLKNSNNEIVDCVCKKVSMIYDIVNENYNKGYNIVIF GMKEHPEIIGINSYCNDSATIIENETDIEKIPDGKLCVVSQTTNNEERYKKLINLIKDIS KDEVLVYNTICSATKNRQQSVLELSKEVEAMIVLGGKNSSNTKKLADVAKLHCKNVYLLE SIEDLEYSKFKKFNKIGIAAGASTPDSVIKEAVSSMENFDNNEMMEAIENSFKKIRRGEV VEGEVLFVNENEVMVNIGYRSDGIISREELSNDPEVKPSDLFKPGDKIQVYVLKIDDGDG NVVLSSKRVENIKVWDEVEEKFNNKERVTAKVKSVVKGGLTAEFNGVNAFIPASHASVRF QRDLSKYVGQEFVCDIIDFDKSKRKVVLSRKNVEAEELEAKRKSVYESLQEGDVIEGTVQ RLTNFGAFIDLGGVDGLIHISELSWNRVKHPADVVAPGQKVEVQVLTVDEEKNRIALGLK QTTKKPWDIFVSTTQVGDVVEGKVVNLLEFGAFIRLESGVDGLLHVSQISKEHVEKPADK LTMGEEVTVKITDIDEENKKISLSMKALIEDEEPEEVVEEVVSEEPVVEKVEEEVVEEKV EAPKQEEFNTTIGDLFGNINLEN >gi|289656134|gb|ADCS01000056.1| GENE 16 20388 - 20966 569 192 aa, chain - ## HITS:1 COG:BH1635 KEGG:ns NR:ns ## COG: BH1635 COG0204 # Protein_GI_number: 15614198 # Func_class: I Lipid transport and metabolism # Function: 1-acyl-sn-glycerol-3-phosphate acyltransferase # Organism: Bacillus halodurans # 3 176 4 177 195 138 39.0 5e-33 MFYRIIRFILFVFFKIFFGFEVIGIENLPEDRPLLICPNHKSNWDPAFIDACLKHKIYWM AKKELWRNKLVGKFIEAMGAFPVDRQTADVKSVKNALRILKNGEIVGIFPEGTRVRKIDY SMAKPGVAMIAHRARTLIVPMYIDGNYKLFKKMKLVIKEPIDIRDLEKQNIEQYESIASD ILKTIYNGVDGN >gi|289656134|gb|ADCS01000056.1| GENE 17 20956 - 21606 622 216 aa, chain - ## HITS:1 COG:CAC1848 KEGG:ns NR:ns ## COG: CAC1848 COG0283 # Protein_GI_number: 15895123 # Func_class: F Nucleotide transport and metabolism # Function: Cytidylate kinase # Organism: Clostridium acetobutylicum # 3 213 4 216 217 165 47.0 5e-41 MYSVAIDGPAGSGKSTVAKMLAKELDISYIDTGAMYRAIAYKAKKNSAITEEDIKKLLIE TDIDYKDGKIYLDGDDISENIRTEEISKMASDISKYKFVREFLVFIQQKIAKKISVVMEG RDIGTVVLKDAKYKFFLTATVDIRAKRRYEQLLKKGEIADFEMIREDLINRDYNDSHREN SPLKKADDAYLVDNSNLDLRQTLDYMLDIIRGKNVL >gi|289656134|gb|ADCS01000056.1| GENE 18 21687 - 21821 76 44 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MEVFQKNLSLFQHTYYPAFKYYVNNQLVILYMLSYNIKRRLSVS >gi|289656134|gb|ADCS01000056.1| GENE 19 21905 - 22738 929 277 aa, chain - ## HITS:1 COG:TM0962 KEGG:ns NR:ns ## COG: TM0962 COG1512 # Protein_GI_number: 15643722 # Func_class: R General function prediction only # Function: Beta-propeller domains of methanol dehydrogenase type # Organism: Thermotoga maritima # 41 181 30 163 238 102 41.0 7e-22 MKNIRRFIFLTVCLLLFSTNVFAAASLDKILVSPSAARGCVYDEVNILSDENIEYINNTN SDLQNKTKGQIAVVIINSLENYDIEQYATKLFEKWKIGDEKQDNGVLILFAIDDRKMRIE TGYGAEGFIPDAYASRTIRNMAEIFKRNSDESDKSKMYQDGIMEGYNEILSHYAKEYGVE IENIKQPMYGEYLEYSEYKNEDELTFSEDMIIFVIIILIVITSNMIKPRKKGKRRRYHGH DFFGGGSFRGSSGGGSFGGGFSGRGGSSGGGGASGGW >gi|289656134|gb|ADCS01000056.1| GENE 20 22750 - 23304 666 184 aa, chain - ## HITS:1 COG:TM0961 KEGG:ns NR:ns ## COG: TM0961 COG1704 # Protein_GI_number: 15643721 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Thermotoga maritima # 17 184 26 193 193 169 54.0 2e-42 MKKIIVFILAVVVIVGGLLVPKYNKLVTLDNEVDAAYSQVQVVIKRRADLIPNLVETVKG YASHEEETFLKVVEARNKVQNAQNPEELSKADNELTSAISKLNVVVENYPELKANQNFLD LQAQLEGTENRIATERGRYNETVKEYNEVVRSFPMNLFAKAFGFEKKGYFEANPEDQQAP DVKF >gi|289656134|gb|ADCS01000056.1| GENE 21 23306 - 24481 1307 391 aa, chain - ## HITS:1 COG:CAC2971 KEGG:ns NR:ns ## COG: CAC2971 COG0301 # Protein_GI_number: 15896224 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine biosynthesis ATP pyrophosphatase # Organism: Clostridium acetobutylicum # 11 390 12 384 384 352 46.0 1e-96 MDRVISISLGEVMLKGKNRKNFIDKIVGQVKRAIADIGYEKIFNDMGKIYILADYESFES IIKRVQHVFGIVYISPCIRIKRNSDEFEKAVLEVVKEAMEKNSDIKTFKAHTKRADKNYE LKSMDVNNKIGGIVLKNTELKVDVHNPDLYVYCDVKEDIYFYTQRYKAHGGLPIGTNGRG LLLLSGGIDSPVAGFLMAKRGVQIDALHFHSYPFTSDRAEEKVHNLAKILSAYTGNLTIY SVNLLPIQKEINKNCPEDEMTIISRRFMMRIAEKISDKNGYNSIITGENLGQVASQTIDG LNVTNRITDRLIFRPLIGLDKVDIMDIAKKIGTYETSILPFEDCCTVFLPKHPSLKPRLS DIEKSEEPLNVEELVNNAISEMKIVKIKQEA >gi|289656134|gb|ADCS01000056.1| GENE 22 24486 - 25631 1307 381 aa, chain - ## HITS:1 COG:lin1635 KEGG:ns NR:ns ## COG: lin1635 COG1104 # Protein_GI_number: 16800703 # Func_class: E Amino acid transport and metabolism # Function: Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes # Organism: Listeria innocua # 1 380 1 379 379 272 39.0 1e-72 MIYLDNCATTKPREEVVEAVVSALKDDFANPSSLHRFGHEIEKKIDVARENLARLVNVSP SEIYFTSGGTESNNIALHGFINKNKRLGNKIITTKIEHASVLEQLRSYVDRGFEVVEIGV DENANLDLDSLYREIDDNTIVVGLFHVNNEIGTVNPIEEIVKKIKSINKNVLVHIDGVQA IGKIDVDLRKIGCDSYSMSGHKIYGPKGIGALYLKSNIKINSLVIGGGQESGLRSGTENV PGILGFGIAAKIIKENFSKEHNHAVEIKKYLINSLNTIDDIKINTPENSSPYIVSVSIKD TRAEVLLHYLEQDEIYVSTASACTSNGTHKSHVLEAMGIKREYAEGTIRICSSKDITIED IDLFIDRLKFYVNEIRSIMKR >gi|289656134|gb|ADCS01000056.1| GENE 23 25742 - 26665 541 307 aa, chain + ## HITS:1 COG:CAC0978 KEGG:ns NR:ns ## COG: CAC0978 COG3359 # Protein_GI_number: 15894265 # Func_class: L Replication, recombination and repair # Function: Predicted exonuclease # Organism: Clostridium acetobutylicum # 3 212 18 222 274 88 35.0 1e-17 MKELLFDLEIKNEYILKNFKNSIVLDIETTGLSRKYDAIFLIGIIEIEKNTKTKLLFAEN LKEELNLLKSLNLNGKNIITYNGNRFDIPFINSKLTEYNLSPLSINSFDLYNYVNKFKHI LNLKSYKQKNIEEFLNINRSDFISGGEVCNNYKTYLQTKNEMLLHSILKHNKDDVECLLN SLEIINYIENKSIFYVDEHKFIIEDIFFDKNFLTIKGTTSYNKNLNYNLFNKNLEIRNKI FSYTIEIREDYYSKDKKCKYILSSDYYDIENKTEFPAPRGVYLLYLNNILFENILNLSKT LTQQIIQ >gi|289656134|gb|ADCS01000056.1| GENE 24 26719 - 27414 750 231 aa, chain + ## HITS:1 COG:SA1940 KEGG:ns NR:ns ## COG: SA1940 COG0813 # Protein_GI_number: 15927712 # Func_class: F Nucleotide transport and metabolism # Function: Purine-nucleoside phosphorylase # Organism: Staphylococcus aureus N315 # 2 231 5 234 236 271 59.0 8e-73 MTPHINAKDGAFAKTVLMPGDPLRAKFIAENFLTDAKLVTNVRNMLGYTGAYNGKEVSVM GSGMGIPSIGIYSYELIKFYGVENLIRVGSCGAYSKDLELFDIVLAQGASTNSNYQSGYN LNGNYSALADFDLLLKAYNSSLKLGITPHVGNVLSSDIFYHDNPEEWKNWAKMNILAVEM ESYALYANAQRHGAKALTILTVSDSLVTHKETTSEEREKSFTNMMEIALNI >gi|289656134|gb|ADCS01000056.1| GENE 25 27442 - 28032 522 196 aa, chain + ## HITS:1 COG:SP0954 KEGG:ns NR:ns ## COG: SP0954 COG1555 # Protein_GI_number: 15900831 # Func_class: L Replication, recombination and repair # Function: DNA uptake protein and related DNA-binding proteins # Organism: Streptococcus pneumoniae TIGR4 # 59 196 70 216 216 103 40.0 3e-22 MNNLNRNQIKMIASILVILLIFIAKIYIDNEKSKSENIDSSENLNEVLTLSQDIKTQDEN TTIYVHVCGRVKNPGLINLPANSRVIDAVNAAGGMYDDADIDNINLAKKLNDEDKIYIPV FGENTDSEYISENKKININTADMQMLTSLPGVGEKTAKKIIDYRTKNQFKNIEDIKSVSG FGEKKFNAIKELITVN >gi|289656134|gb|ADCS01000056.1| GENE 26 28370 - 28978 730 202 aa, chain - ## HITS:1 COG:CAC2841 KEGG:ns NR:ns ## COG: CAC2841 COG3601 # Protein_GI_number: 15896096 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Clostridium acetobutylicum # 10 200 4 192 209 148 44.0 6e-36 MNSVKSSGRSRVKAISRIGMLGAVAFVLMYFQVPLAFVAPSFMKFDFSDLPILVGAFTMG PVAAVAISALKNVLHILIQGTHTGGIGPLSNFIVGSIFAVTAGVIYRGNKTFKNAIIGLT VGVLLMTASAVVSNYFFIFPLYAKLFMPMEAIIGAGSAITPKINSLWTMMIYSIIPFNLI KGFVVSIVTILVYKKISPLLKG >gi|289656134|gb|ADCS01000056.1| GENE 27 29207 - 29923 505 238 aa, chain - ## HITS:1 COG:no KEGG:FMG_0111 NR:ns ## KEGG: FMG_0111 # Name: not_defined # Def: hypothetical protein # Organism: F.magna # Pathway: not_defined # 3 232 18 254 258 137 39.0 3e-31 MERNRGFSGSTLKIIAILTMLIDHIGAGIVEKMYPVNSVNLPAMWMNNAGRVDIILRFIG RIAFPLFLFLLIEGYTHTRDKKKYFIRLLIFAFISEIPFDLAFKNKVLEFWGQNIYFELS LIVLMLYLMEYFENNKLLKLSLFLITCVVSTLIRSDYGFFGIVAAFILYELRENRKNQVL GIIPAFLFEMPAMTVYLSMIPIYFYNGKRGLKMKYFFYIFYPLHLIIIYLIRINIFKV >gi|289656134|gb|ADCS01000056.1| GENE 28 29938 - 31332 1514 464 aa, chain - ## HITS:1 COG:CAC0747 KEGG:ns NR:ns ## COG: CAC0747 COG1376 # Protein_GI_number: 15894034 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 15 450 26 465 466 248 33.0 3e-65 MRRAFKFSLYFIIFILLSIYILGFYVFSKVFLPNSRINGKDVSFTKLSEFYNTYNSNYDK FELTLIERDGREQIKVSDFDYKDKLEPGQSINQKSFYWAFYFLIPKDYELKHKITYDREK LEKCINKLKLSTDEMIQPKDAKIIFKNNKFIIEKEVLGNRINRKLLLKKILDHVYDKKEI INLEEEKIYISPNLYASDVKLNNLLAQMNKLNSFEVTYNFDDRKEILKNEELLKLYVENK DGLLVPDIDKVKSYVYLLSNKYDTFRKDRNFYATGIGMVRTSGGIYGWSTNIDETTKQLV KALEETKTVTLEPVYKLTAQSRKKNDLGSAYIEIDLARQHMWLYKDGKLIMETDIVSGNP STGNATPTGVGKIWTREKDRFLTGDDYKSHVNYWLPFNWSGCGLHDSDWRSEYGKDLYIT NGSHGCINTPPDLMHQLFENTFVGMPVVVYDSNTQIIPMNSVQS >gi|289656134|gb|ADCS01000056.1| GENE 29 31438 - 32157 648 239 aa, chain - ## HITS:1 COG:lin2211 KEGG:ns NR:ns ## COG: lin2211 COG1408 # Protein_GI_number: 16801276 # Func_class: R General function prediction only # Function: Predicted phosphohydrolases # Organism: Listeria innocua # 12 228 32 268 284 92 30.0 7e-19 MFYEVSVFKTNRLKIKSGKVRGTIRIVQISDFHNNVFVNLNRLRREINIYNPDFIFLTGD IVSRGTSKYRRIDLFLSIFKDYKTYFVDGNHEIDNENKKIYEILDRYGIVNLSGKCETVN ILDNDIAIYGNGFGVDNVINEKLNFNNYNILLSHSPENFLNNQKLYDLVLSGHKHGGQIR LPFLGQIIDHGPKFFPKYSKGLYQIENTNFYIDSGLGQSIYIRFFNRISYSQIEIEDNP >gi|289656134|gb|ADCS01000056.1| GENE 30 32229 - 32966 917 245 aa, chain - ## HITS:1 COG:CAC0330 KEGG:ns NR:ns ## COG: CAC0330 COG0682 # Protein_GI_number: 15893622 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Prolipoprotein diacylglyceryltransferase # Organism: Clostridium acetobutylicum # 3 240 17 263 272 197 45.0 1e-50 MKINPIAFTIFNIDVRWYGILIALGAFLAIYFDDKLSKKEKMYNGVVTDFAAVAMIFGII GARAYYVIFEWEYYSTHPNEIFAIRNGGLAIYGGILTGILVGYVFSKFKKISFLKFADVI VPGLSLAQGIGRWGNFINEEAHGGPTNLPWGILVDGVKVHPTFLYESILDVLIFIFLYKY LFDRKKFDGQIFMTYLCFYGMGRFFIEGLRTDSLYIGVFRVSQIVSIVMVLIGAVYILYN KKRSN >gi|289656134|gb|ADCS01000056.1| GENE 31 32956 - 33618 912 220 aa, chain - ## HITS:1 COG:L63310 KEGG:ns NR:ns ## COG: L63310 COG0274 # Protein_GI_number: 15673422 # Func_class: F Nucleotide transport and metabolism # Function: Deoxyribose-phosphate aldolase # Organism: Lactococcus lactis # 3 214 1 212 220 243 58.0 3e-64 MKIEINRMIDHTLLKPESTREQVKNLCEEALKYNFKSVCINPYWVEYASEILKGSEVGVC TVIGFPLGANTTELKAFEAREAVKNGAAEVDMVINVGLLKSEEFDAVEKDIKAVVDAADG RIVKVILETCLLSDEEIIKACKLSMNAGADFVKTSTGFSSHGATAHHVKLMKSVVGDNLE VKASGGIRDLKTSLEMIDSGATRLGVSAGIAIVKEYLDEN >gi|289656134|gb|ADCS01000056.1| GENE 32 33608 - 34210 595 200 aa, chain - ## HITS:1 COG:CAC2520_1 KEGG:ns NR:ns ## COG: CAC2520_1 COG0655 # Protein_GI_number: 15895784 # Func_class: R General function prediction only # Function: Multimeric flavodoxin WrbA # Organism: Clostridium acetobutylicum # 1 90 1 95 97 77 45.0 2e-14 MKILAIMGSSRKNSNTDKFLELFVKKFKLQDEDLEKYTLRDLNYDGCTSCYGCGRVPKCV VKDDLTEIYSKIEEADLIIVSTPIYFNSVSSLTKQFIDRTQVYWSRKFILKLRPIKEKYG IALINGGAFNQENQFLGSELVFDHFFKATSCKKNMFVEVSNTDRFPINENNDEFVSFLDS IKLDFNVSNVYRFEGGINEN >gi|289656134|gb|ADCS01000056.1| GENE 33 34211 - 34951 1072 246 aa, chain - ## HITS:1 COG:CAC2295 KEGG:ns NR:ns ## COG: CAC2295 COG0217 # Protein_GI_number: 15895562 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Clostridium acetobutylicum # 1 246 1 245 246 257 55.0 1e-68 MSGHSKWNNIKNKKGKEDARRGRIFTKLGRYIMVAVKEGGPDPEYNPSLKVAIDKAKAEN MPNDNIERAIKKGAGADADSNYEEITYEGYGPSGIAIMVNCLTDNRNRTAPDIRHAFDKY GGNLGQPGCVSFMFDKKGQLGIEKTDSIDADELMMSAIELGADDVIDREDVFEILTAPEE YHVVRNGLEEMGYEFIHSDISYIPQNYTALESEDDIKKMIKLIDILEDNDDVQEVYTNWD RPEEEE >gi|289656134|gb|ADCS01000056.1| GENE 34 35128 - 35307 232 59 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227484646|ref|ZP_03914962.1| ribosomal protein L32 [Anaerococcus lactolyticus ATCC 51172] # 1 56 1 56 59 94 71 2e-18 MAVPKRKTSKQRRNKRRASSYRLNKTTIVECPNCHEAKMPHRVCPSCGYYDGKEVVAMD >gi|289656134|gb|ADCS01000056.1| GENE 35 35310 - 35834 183 174 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|170758590|ref|YP_001787770.1| ribosomal protein L32 family protein [Clostridium botulinum A3 str. Loch Maree] # 1 172 1 166 166 75 30 8e-13 MKLNIKDFLQSPDKKMEFSGKLEHQQSDYDISNLNLIFPIEYSGTIFDLESELLLDLSIN YKYNTHCDRCLKPLVKEQVSNLKGYFVKNSDMEYEDGADIQYFELCDGEIFLDDIIISQV ITSMPFKNLCDEFCKGLCPKCGKDLNEGLCGCEKTKDVDLRFEKLMNLFNDEEV >gi|289656134|gb|ADCS01000056.1| GENE 36 35945 - 37147 1699 400 aa, chain - ## HITS:1 COG:TM0274 KEGG:ns NR:ns ## COG: TM0274 COG0282 # Protein_GI_number: 15643044 # Func_class: C Energy production and conversion # Function: Acetate kinase # Organism: Thermotoga maritima # 1 400 1 399 403 476 59.0 1e-134 MKILVINCGSSSLKYQLIDMDGEKVIAKGLVERIGIEGSRIKHETIGKEKKVIEEPLKDH NDALKLVMNSIVDPEFGAIKSLDEIGAVGHRVVHGGEDFAQSVVIDDNVMEAINKNVEVA PLHNPPNIMGIEACKSLLPNVKQVAVFDTAFHQTMPPINYLYAIPYKFYEKYKIRRYGFH GTSHMYITNRTAEILGKDVNEINLITCHLGNGSSITAVKNGKSYDTSMGFTPLDGLAMGT RSGIIDPAIVPYLMEKEHLSAEQVNNILNKESGVLGISGVSSDFRDIEDACSEGNERSKL ALDIFENNVRKIIGAYMTEFKSLDEIDAIVFTAGLGENSKETRANIINGLSAFGLKIDDE ANNMRGEERIISSPESKIKVLSIPTNEELMIARDTLRLVK >gi|289656134|gb|ADCS01000056.1| GENE 37 37225 - 38400 952 391 aa, chain + ## HITS:1 COG:CAC1741 KEGG:ns NR:ns ## COG: CAC1741 COG1323 # Protein_GI_number: 15895018 # Func_class: R General function prediction only # Function: Predicted nucleotidyltransferase # Organism: Clostridium acetobutylicum # 1 391 1 402 402 180 35.0 4e-45 MKTAAIIAEYNPFHNGHLYQLKKIKEKNLNAVIIMSSSFTQRGTPAIIDKFARTKIALTY GADLVLELPVIFSTSNAEIFSKGAINILESLDSIDYLYFGAEDSLENLLKINEKIELNKK NSEEKLKNYLSAGKSYLEARELSYDFLDDTEIEILKKSNNILGIEYLKALKHINSYIQPA VIQRKNTCHNSDLIIDNFTSASSIRKLIENKNLNSIENLVPKKSFDEIKNSSYNFQDRYF EIFKFLVLSQKINYENYVDYENGLENRFMKYLSNKNIYDFIESVSSKRYTKSRISRLITQ IILDIKKDFIFEALNANYIRILGIGKNGTEILKVLKDKNIFFIDKFAKINSLNKNSTIKQ IAEKEIFATNMYNMMINKNFMEDYLKSPIII >gi|289656134|gb|ADCS01000056.1| GENE 38 38565 - 40397 2038 610 aa, chain - ## HITS:1 COG:BH3636 KEGG:ns NR:ns ## COG: BH3636 COG0747 # Protein_GI_number: 15616198 # Func_class: E Amino acid transport and metabolism # Function: ABC-type dipeptide transport system, periplasmic component # Organism: Bacillus halodurans # 57 608 71 609 610 399 38.0 1e-110 MKKNIAKLAGIMACALLFTACGDVSGGGGSSKEPTDVKQTTSAIEEKYPALVENEGEPVE GATLKVAIVSDSPFKGVFNGFLYTDAIDDNFMKYTMDGAFPVDGDFKLITNSDETPINLS FDEAEKTVTYKINPNFKWSNGEQVTTADIVKTYEIVANQDYITAAQSARFDESMEKIVGI VDYNQKKADKISGLEVIDDSTMKIHLTEITPSVLWGGCFCGEFVNAKQFEGVAMDKIIES PALRKNPLSYGPYFIKDMVSGEKVIFEANPYYYKGEPKIKNLEMEILPPSQQVAAIKAGK YDLVFGTNVDVFPELIELDNINVATRMDLYMSYLGFKLGTWDAAKGEVVVNPEAKMADPN LRKAMGYAIDNDALGEQYYHGLRFTAASPIPPLFATLHDPEITGYKLDLEKAKTLLDEAG FKDVNGDDIREDKNGNPLKINLAMMSGSEIQEPLSQYYMQQWKSIGLDVELVDGRLLDFH NFYDRLEADDEGIDCYMAAFGLASDPDQIGLFGKKAPFNMARYTSDELQAAVEKLGSAEA MDDAKRVELYHNFEKVFTNEVPIIPQMNRVDILPINKRVKMYDWRWDDSETGFTWAKIEL VANEPIASGN >gi|289656134|gb|ADCS01000056.1| GENE 39 40452 - 41372 1163 306 aa, chain - ## HITS:1 COG:BH3637 KEGG:ns NR:ns ## COG: BH3637 COG1173 # Protein_GI_number: 15616199 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Bacillus halodurans # 18 306 17 302 302 294 52.0 2e-79 MKLKKTKNSLVEENLKTENPTGFSVIAREFKKDKLAMFSLIVLVVFIVTVFATAMTIDLK QLQAVDILRKYEPPSFNNFWNFFGRDSGGRSVMGYVIVGARNSITIGFAITIITTLIGLI TGLSMGYYGGKVDSIGMRIVDFIGILPSLMIIIVFVSILPKYDVWQFILIFSAFYWPGTT RLVRSKALSEARRDYVNASKTMGTSNLKIMFGGILPNISSIIIVDSTLALAGNIGVEVAL SYLGFGLPQSVPSLGTLISYASKPEIIQYKYYVWLPAALILLFMMLAINYVGQALRRASD AKQRLG >gi|289656134|gb|ADCS01000056.1| GENE 40 41388 - 42350 1091 320 aa, chain - ## HITS:1 COG:BH3638 KEGG:ns NR:ns ## COG: BH3638 COG0601 # Protein_GI_number: 15616200 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Bacillus halodurans # 1 320 1 322 322 330 50.0 3e-90 MWKTILRRILLMIPQLFILSILVFIIAKAMPGDALTGLIGPKVSLEVIEKLRLEAGYYDP WYVQYIRWITKAFHGDLGISYNYKLPVLTVIGPRALNSFVLSLLSLIIMYIIALPVGIFA GKNQGSRFDKGVVFFNFFTFAIPSFVLYLFAILIFGYKLKWTPTIGSVATGLAKGTFEYY LSKLHHMILPALCMGILSTTGTIQYLRNEVIDAKTCDYVKTARSKGVPMNKVYTKHIFRN SLLPIAAFFGFQISGLLGGSVIAEGIFNYQGMGKFFLESLLTRDYSVVTALILIYGLLFL LGSLVSDITMTIVDPRIRIE >gi|289656134|gb|ADCS01000056.1| GENE 41 42350 - 43291 724 313 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 3 265 11 273 329 283 51 1e-75 MSLLEVKDLKVHYPIRGGFFNKVVDHVYAVDGVDMVVEEGKTYGLIGESGSGKSTIGKAI IGLEKATSGEVIYKGKNVLDSRVRKELKYNQDVQMIFQDSMSSLDPKKRVLDILAEPIRN FDNLNEEAEKKRVFELLEIVGMPKDSIYKYPFEFSGGQRQRLGVARAIACKPKLIIADEP VSALDLSVQAQVLNYLKKIQKDLNLSYIFISHDLGVVRHMCDYIYIMHRGRFTETGSRED IYNNPQHIYTKRLIASIPQINPKAKEILKEKRELVDKEYEQSYSEYYDKDGKVYTLEKMS ETHFVAQKKGGNI >gi|289656134|gb|ADCS01000056.1| GENE 42 43291 - 44295 624 334 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 17 324 28 328 329 244 42 6e-64 MEGKIALCEMKNLHTGFRIRDNYYDAVDDVSLTLYSDEVLAIVGESGCGKSTLATTIMGL HDFNYTRVSGEVNFEGKNILELNEEEYNKIRGGKIGMIFQDPLSALNPLQRIGQQIEEGL IYHTDLNAEQRKQRAFELLSRVGIEKPERIYRQFPHQLSGGMRQRVMIAIALSCKPKILI ADEPTTALDVTIQAQILDLISDLQKEIKAGIILITHDLGVVAQMADRVAVMYAGEIVELA ESEELFTNPLHPYTKSLLNSIPHLDKEDDKLHVIKGMVPSLKNLPRTGCRFSERIPHIPH EAHEENPTLHEVSPGHFVRCTCWKDFYFDEGDDN >gi|289656134|gb|ADCS01000056.1| GENE 43 44559 - 46238 1647 559 aa, chain + ## HITS:1 COG:FN1145 KEGG:ns NR:ns ## COG: FN1145 COG1164 # Protein_GI_number: 19704480 # Func_class: E Amino acid transport and metabolism # Function: Oligoendopeptidase F # Organism: Fusobacterium nucleatum # 1 559 1 559 559 852 77.0 0 MKFKDMPYVRPDINKVKAYFNNVKENLNKANSADEQIKIIEEFAEFKKDLETTFSIASVR HTIDTLDEFYEAENSFFDENTPIFETLNTEVSKAIFNSKFRSELEKHFGKHYFNLLECNL VLNDAAIPFMQKENELITKYNKIIANSKIEFRGNIYTITQMPPFLQDPDRELRREAYKAK NAFFEKHQEEFDSIFDELVKVRTDMAHTLGYENYVELQYKLLKRTDYDHKDVAKYREKLL KSFTPLAVSIRKSQAERLGIEDFKYFDIACDFIDGNSNPNGDCDFIVKNAQKMYRELSPE TGKFFDFMVENELMDLVAKPKKRAGGYCTSFDKYKSPFIFSNFNGTRGDIDVITHEAGHA FQNFMSQYQLLPEYIWPTYEACEIHSMSMEFLTWPWMNAFFGKDANKFRYSALKSALLFI PYGATIDHFQHFVYENPNATPKERRQKYHELELMYTPDLDYDDDYLNQGTYWFGQAHVFN SPFYYIDYTLAQVCAFQYLLKYINYPKKTLDEYITLCKAGGSDSFFNLMKIGNLENPMTT YVIEKITPRLEEVLNSIEI >gi|289656134|gb|ADCS01000056.1| GENE 44 46267 - 49005 3338 912 aa, chain - ## HITS:1 COG:NMB1536 KEGG:ns NR:ns ## COG: NMB1536 COG0653 # Protein_GI_number: 15677388 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecA (ATPase, RNA helicase) # Organism: Neisseria meningitidis MC58 # 5 910 7 914 916 803 49.0 0 MSFLEKLFGSYSDREIKKIEPLVNKVMNLEASMEKLSDEELKAKTQEFKNRYNNGESLDE MLPEAFAVMREAAWRVLGMKHFRVQVIGGIILHQGRIAEMKTGEGKTLVATLPAYLNALS GKGVHIVTVNDYLASRDKQWMGKVYQFLGLTVGCIVHDMKPEERKVAYNADITYGTNNEF GFDYLRDNMVIYKEEMVQRELNYCIVDEVDSILIDEARTPLIISGQGDESTDLYIRANNF VNTLTRRIKTEDESNFERFNREFEEETVDFVISEKDKTSTLTDKGIAKAERYFNIDNLSD LENMEISHHINQALKAVGNMKRDIDYVVNDGEIIIVDEFTGRLMYGRRYSEGLHQAIEAK EGLEVKAESKTLATITFQNYFRMYSKLAGMTGTAMTEESEFRDIYHIDVVEIPTNKPIAR EDNNDSIYKNEDAKFRAVVRDIQVAHEKGQPVLVGTISIEKSEELSKYLKRAGIKHNVLN AKKHEQESEIVAQAGRFGAVTIATNMAGRGTDIVLGGNPEYMAKVELKKHGMEDEILEQV DSFNETSDEVIVEARRQYQELVKKFKVETDKEAQEVANAGGLHIIGTERHESRRIDNQLR GRSGRQGDPGSTRFYISGDDDLIRLFAGDRFKDTMEKIDAPEDEPIEAGILTRLIESAQR KVEGNNFSIRKHVLQYDDVMNKQREVIYRERRRVLQGENLKDDIALMVDDVIEKNVDFYN KVDETGNRHLDFEGLVGFGVREFGFDEGFLADLNNSTVEQVIERFNTLAREKYTQKEEEF GDERFREVERVVLLQVVDQKWMDHIDAMDQLRKGIGLRAVGQVDPVRAYGQEGFDMFEEM NESIKEDTVKMLFHVVNPERVQRVRVAKEVETVNPDDGKKKPFVRKTKKVGRNDPCPCGS GKKYKNCCGRNE >gi|289656134|gb|ADCS01000056.1| GENE 45 49555 - 49776 258 73 aa, chain - ## HITS:1 COG:no KEGG:CD0410 NR:ns ## KEGG: CD0410 # Name: not_defined # Def: hypothetical protein # Organism: C.difficile # Pathway: not_defined # 1 70 1 70 283 87 57.0 1e-16 MMKELAEILIKGVRYSFDPETKYMKDGHAYCKTCHERKGGEVRSLMDMKFIFKNNCKCDR ERLEKQKRRETDV >gi|289656134|gb|ADCS01000056.1| GENE 46 49773 - 50459 708 228 aa, chain - ## HITS:1 COG:no KEGG:SEQ_0730 NR:ns ## KEGG: SEQ_0730 # Name: not_defined # Def: replication initiation protein # Organism: S.equi_equi # Pathway: not_defined # 37 228 87 283 283 181 51.0 2e-44 MRRLRTYPRTQRFYILAFWSEQACLLGINGSMKKTEYIIFTVEEIMETLGRSNKTAVKIL NELDNTSGGIGLIERKKRGFGKPNIIYVRDFMSVFRSECKNYTSEVKNLHSRSVETTSQE MKNVHGSNLNINNTEYSNPDMSLGKVAYGTFQNVFLTEDEVMDLKEILQSLFDNYIERLS TYIQSTGKTYKDHKATILSWFYKDRGSIKQTNKAKSYSLEDYEMGDYL >gi|289656134|gb|ADCS01000056.1| GENE 47 50641 - 50862 266 73 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|299144389|ref|ZP_07037469.1| ## NR: gi|299144389|ref|ZP_07037469.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 386 str. F0131] # 12 73 12 73 73 100 100.0 2e-20 MTILKIILITIGVAFIMFGYEIHFQKKYNLINGFEEDYKNGRKTESYAKKVGLIEFVLGI VLALIGICVIIIK >gi|289656134|gb|ADCS01000056.1| GENE 48 50897 - 51433 592 178 aa, chain - ## HITS:1 COG:no KEGG:Mbar_A1092 NR:ns ## KEGG: Mbar_A1092 # Name: not_defined # Def: hypothetical protein # Organism: M.barkeri # Pathway: not_defined # 1 175 5 180 192 146 46.0 2e-34 MEKDIQLCLMEEDDREQFILDNQEAFNYGALEEFGCRDNHFEEDGQIISRETIEQSIDHG KAYRIILEEKKVGGAVIKVDGEKGSLDLLFVSPDAHGKGVGSAAWCQIEKLHPEVKIWET ITPYFEQRNIHFYVNRCGFHIVEFFNKFHPDPNEPEADVKEFDEQFPDGMFRFEKRID >gi|289656134|gb|ADCS01000056.1| GENE 49 51462 - 51632 130 56 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0573_11777 NR:ns ## KEGG: HMPREF0573_11777 # Name: not_defined # Def: membrane protein # Organism: M.curtisii # Pathway: not_defined # 1 56 5 60 60 72 91.0 6e-12 MLFCIFGALASFIQGEVGIGISGLVIGFLFSPYGLPMIGATVIAFIELINEKIKAV >gi|289656134|gb|ADCS01000056.1| GENE 50 51541 - 51822 105 93 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MCCLKPISTKNNGCKQHISRREKEVVYAMDIKNYLISDSPYLTNFDSFSEILAWYMNGTF VYRYVVLHIWSISFFHSRRSRNRYIGLSHRFPI Prediction of potential genes in microbial genomes Time: Fri May 27 07:50:40 2011 Seq name: gi|289656133|gb|ADCS01000057.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.57, whole genome shotgun sequence Length of sequence - 4042 bp Number of predicted genes - 7, with homology - 5 Number of transcription units - 4, operones - 2 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 116 62 ## - Prom 320 - 379 5.9 2 2 Tu 1 . - CDS 385 - 753 343 ## Cphy_1607 hypothetical protein - Prom 802 - 861 5.0 3 3 Op 1 . - CDS 879 - 998 107 ## 4 3 Op 2 . - CDS 949 - 1953 504 ## gi|299144392|ref|ZP_07037472.1| conserved hypothetical protein - Prom 2074 - 2133 7.6 - Term 2071 - 2116 0.1 5 4 Op 1 . - CDS 2173 - 2487 488 ## COG3070 Regulator of competence-specific genes 6 4 Op 2 . - CDS 2552 - 2980 410 ## COG0346 Lactoylglutathione lyase and related lyases 7 4 Op 3 . - CDS 3007 - 3828 598 ## SmuNN2025_0027 hypothetical protein - Prom 3979 - 4038 3.6 Predicted protein(s) >gi|289656133|gb|ADCS01000057.1| GENE 1 2 - 116 62 38 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MDIKNYLISDSPYLTNFDSFSEILAWYMNGTFVYRYVV >gi|289656133|gb|ADCS01000057.1| GENE 2 385 - 753 343 122 aa, chain - ## HITS:1 COG:no KEGG:Cphy_1607 NR:ns ## KEGG: Cphy_1607 # Name: not_defined # Def: hypothetical protein # Organism: C.phytofermentans # Pathway: not_defined # 1 121 1 121 122 137 52.0 1e-31 MNIVTFFNYIVSQSKIKLKEYFHEDATIRWHCTNEIFTVDEYIKVNCEYPGDWDGKIELI ERINNTIILASQVYSKDKSLSFHVVSFIRIENDLIIKMDEYWAGDGLAPEWRIKMKIGKL IY >gi|289656133|gb|ADCS01000057.1| GENE 3 879 - 998 107 39 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNFIGSERFMKKKLKDNSFHIVDKYILPFEIDFWIYVKI >gi|289656133|gb|ADCS01000057.1| GENE 4 949 - 1953 504 334 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|299144392|ref|ZP_07037472.1| ## NR: gi|299144392|ref|ZP_07037472.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 334 1 334 334 595 100.0 1e-168 MQTIIISIVTSLIASLIFWLFFTKFPEVIKYKKMRPIIEYDICNISTNILFFLQMAYDNR GMRPSVDQVKIKANVVDESEYRLMLQNKCLNESYLYDENKDNMIPIGDELERLSNNICKG IEDLSFYHRFMSSSEILLLKKIKVTITSYSYLDQAGSKSGDKVFFPADPTISYMSNNFKI INNYYFDLNKIIFKFKYLDKDLNGFVNDFNFEKSRIFYELGYYKKAHECALKISDNNRKN GQIFMCLFKLTKIDESLFYLEKYLKTTNLELIYIRSTFKDSYDNTKVLNKLYLCRNKNEV DELLEYFHTERQLKGNIISELYRLRTFYEEKIKR >gi|289656133|gb|ADCS01000057.1| GENE 5 2173 - 2487 488 104 aa, chain - ## HITS:1 COG:CAC2476 KEGG:ns NR:ns ## COG: CAC2476 COG3070 # Protein_GI_number: 15895741 # Func_class: K Transcription # Function: Regulator of competence-specific genes # Organism: Clostridium acetobutylicum # 3 96 6 98 114 65 40.0 3e-11 MNEFNEFVREIFSAAGDIVIRSMMGGYLIYFNGKLIGDICDNELFLKRTPTSDKLLADSE LRYPYEGSKTLMYAFERFEDMDLITELLKGMYAELPEKKPKKDR >gi|289656133|gb|ADCS01000057.1| GENE 6 2552 - 2980 410 142 aa, chain - ## HITS:1 COG:FN0974 KEGG:ns NR:ns ## COG: FN0974 COG0346 # Protein_GI_number: 19704309 # Func_class: E Amino acid transport and metabolism # Function: Lactoylglutathione lyase and related lyases # Organism: Fusobacterium nucleatum # 1 142 1 142 142 239 80.0 1e-63 MNKITCICLGVKDMERSIKFYRDGLGYKTDCRENNPPVCFFDTQETKFELFPLEQLAKDI DENNPPKGNGFSGITLAYNVEHKEDVDTVIEFVRKAGGKIVKEPQEVFWGGYHAYFSDLD GYYWEVSWGPNFQFDENGLLKF >gi|289656133|gb|ADCS01000057.1| GENE 7 3007 - 3828 598 273 aa, chain - ## HITS:1 COG:no KEGG:SmuNN2025_0027 NR:ns ## KEGG: SmuNN2025_0027 # Name: not_defined # Def: hypothetical protein # Organism: S.mutans_NN2025 # Pathway: not_defined # 69 272 1 204 206 319 81.0 7e-86 MLFCIFGALASFIQGEVGIGISGLVIGFLFSSYGLTMIGATVIAFIELINEKIKVVQTNR YFVRRRGYLKEYIASLEKEFSLIENGFKEEEKRALTDYKSNDKEYAKNLAFLAYKSGTYQ VRMYGVFLFGYLSEQDDILAFMRDEVSKDDNWRVQEVLAKAFDEFCKKKGYEKALPIIDE WLKNNNPDTRRAVTEGLRIWTSRPYFKENPNEAIERIANLKEDASEYVRKSVGNALRDIS KKFPELIKIELDSWKLESKEIKQVYKLASKLIV Prediction of potential genes in microbial genomes Time: Fri May 27 07:51:22 2011 Seq name: gi|289656132|gb|ADCS01000058.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.58, whole genome shotgun sequence Length of sequence - 52744 bp Number of predicted genes - 59, with homology - 59 Number of transcription units - 19, operones - 12 average op.length - 4.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 298 - 468 136 ## COG0286 Type I restriction-modification system methyltransferase subunit - Prom 618 - 677 7.8 2 2 Tu 1 . - CDS 875 - 1117 302 ## gi|299144397|ref|ZP_07037477.1| hypothetical protein HMPREF0629_01280 - Prom 1259 - 1318 8.0 - Term 1359 - 1388 -0.2 3 3 Op 1 . - CDS 1428 - 1970 313 ## PROTEIN SUPPORTED gi|50365462|ref|YP_053887.1| acetyltransferase of 30S ribosomal protein L7 - Prom 2000 - 2059 7.0 4 3 Op 2 . - CDS 2062 - 2766 732 ## Pmob_0418 hypothetical protein - Prom 2793 - 2852 5.7 5 4 Op 1 . - CDS 2854 - 3336 566 ## COG4894 Uncharacterized conserved protein 6 4 Op 2 . - CDS 3383 - 4024 897 ## COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases 7 4 Op 3 . - CDS 4036 - 5088 1176 ## COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family 8 4 Op 4 . - CDS 5098 - 5919 925 ## COG0005 Purine nucleoside phosphorylase - Prom 5951 - 6010 7.7 - Term 5989 - 6019 -0.5 9 5 Op 1 . - CDS 6023 - 6493 493 ## COG0386 Glutathione peroxidase 10 5 Op 2 . - CDS 6549 - 7196 506 ## COG1272 Predicted membrane protein, hemolysin III homolog - Prom 7429 - 7488 9.6 + Prom 7185 - 7244 10.8 11 6 Tu 1 . + CDS 7333 - 7692 262 ## gi|299144406|ref|ZP_07037486.1| conserved hypothetical protein + Prom 7708 - 7767 5.9 12 7 Op 1 . + CDS 7842 - 8474 770 ## COG0302 GTP cyclohydrolase I 13 7 Op 2 . + CDS 8471 - 8947 407 ## COG1418 Predicted HD superfamily hydrolase 14 7 Op 3 . + CDS 8958 - 9776 620 ## PROTEIN SUPPORTED gi|148994682|ref|ZP_01823786.1| 50S ribosomal protein L13 + Prom 9787 - 9846 15.6 15 7 Op 4 . + CDS 9869 - 11386 1346 ## COG0433 Predicted ATPase + Term 11389 - 11415 0.3 - Term 11372 - 11409 5.3 16 8 Op 1 . - CDS 11465 - 12154 682 ## COG4912 Predicted DNA alkylation repair enzyme 17 8 Op 2 . - CDS 12164 - 14008 2125 ## COG0433 Predicted ATPase 18 8 Op 3 . - CDS 14005 - 14949 1088 ## BH0051 hypothetical protein 19 8 Op 4 1/0.000 - CDS 14942 - 15754 977 ## COG0313 Predicted methyltransferases 20 8 Op 5 . - CDS 15755 - 16450 652 ## COG4123 Predicted O-methyltransferase - Term 16491 - 16521 -0.4 21 8 Op 6 . - CDS 16522 - 18321 1390 ## FMG_1253 hypothetical protein - Prom 18534 - 18593 7.0 22 9 Op 1 8/0.000 - CDS 18604 - 19335 545 ## COG0101 Pseudouridylate synthase 23 9 Op 2 34/0.000 - CDS 19332 - 20129 737 ## COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters 24 9 Op 3 15/0.000 - CDS 20122 - 20988 993 ## COG1122 ABC-type cobalt transport system, ATPase component 25 9 Op 4 . - CDS 20979 - 21800 303 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 - Prom 21822 - 21881 8.5 26 10 Op 1 . - CDS 21899 - 22528 688 ## COG2094 3-methyladenine DNA glycosylase 27 10 Op 2 . - CDS 22494 - 22883 283 ## COG3339 Uncharacterized conserved protein - Prom 22957 - 23016 7.4 + Prom 22911 - 22970 6.9 28 11 Tu 1 . + CDS 22990 - 23847 881 ## COG4905 Predicted membrane protein + Term 23850 - 23896 11.1 - Term 23838 - 23883 7.1 29 12 Op 1 9/0.000 - CDS 23888 - 24517 746 ## COG0461 Orotate phosphoribosyltransferase 30 12 Op 2 . - CDS 24521 - 25222 936 ## COG0284 Orotidine-5'-phosphate decarboxylase - Prom 25257 - 25316 7.4 - Term 25289 - 25318 1.4 31 13 Tu 1 . - CDS 25326 - 27155 1865 ## Apre_1818 copper amine oxidase domain protein - Prom 27191 - 27250 9.0 - Term 27416 - 27457 1.0 32 14 Op 1 21/0.000 - CDS 27462 - 28082 719 ## COG1392 Phosphate transport regulator (distant homolog of PhoU) 33 14 Op 2 . - CDS 28084 - 29124 1144 ## COG0306 Phosphate/sulphate permeases 34 14 Op 3 9/0.000 - CDS 29134 - 30489 1540 ## COG2848 Uncharacterized conserved protein 35 14 Op 4 . - CDS 30498 - 30767 406 ## COG3830 ACT domain-containing protein - Prom 30789 - 30848 3.4 - Term 30790 - 30858 4.0 36 14 Op 5 . - CDS 30859 - 31182 458 ## Adeg_1221 hypothetical protein - Prom 31217 - 31276 9.3 37 15 Op 1 29/0.000 - CDS 31309 - 32304 1283 ## COG2025 Electron transfer flavoprotein, alpha subunit 38 15 Op 2 . - CDS 32313 - 33098 854 ## COG2086 Electron transfer flavoprotein, beta subunit - Prom 33121 - 33180 7.3 - Term 33152 - 33212 17.0 39 16 Tu 1 . - CDS 33214 - 34389 1458 ## COG0281 Malic enzyme - Prom 34531 - 34590 10.1 - Term 34575 - 34621 12.2 40 17 Op 1 . - CDS 34622 - 35641 1403 ## COG1186 Protein chain release factor B - Prom 35674 - 35733 2.1 41 17 Op 2 . - CDS 35758 - 36870 827 ## PROTEIN SUPPORTED gi|163764768|ref|ZP_02171822.1| ribosomal protein S5 42 17 Op 3 . - CDS 36875 - 37360 686 ## COG1329 Transcriptional regulators, similar to M. xanthus CarD - Prom 37383 - 37442 9.0 43 18 Tu 1 . - CDS 37596 - 38456 729 ## CKR_3411 hypothetical protein - Prom 38504 - 38563 5.5 - Term 38504 - 38556 10.3 44 19 Op 1 11/0.000 - CDS 38565 - 40436 1372 ## PROTEIN SUPPORTED gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 45 19 Op 2 10/0.000 - CDS 40489 - 41016 573 ## COG0634 Hypoxanthine-guanine phosphoribosyltransferase 46 19 Op 3 2/0.000 - CDS 41003 - 42346 1189 ## COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control - Term 42352 - 42382 2.0 47 19 Op 4 . - CDS 42393 - 42794 317 ## PROTEIN SUPPORTED gi|168187048|ref|ZP_02621683.1| ribosomal protein S1 domain family protein 48 19 Op 5 . - CDS 42814 - 43131 427 ## gi|299144439|ref|ZP_07037519.1| putative septum formation initiator family protein 49 19 Op 6 1/0.000 - CDS 43196 - 43438 316 ## COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) - Term 43447 - 43475 2.3 50 19 Op 7 1/0.000 - CDS 43483 - 43761 552 ## COG0776 Bacterial nucleoid DNA-binding protein 51 19 Op 8 . - CDS 43775 - 45121 1425 ## COG3956 Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain 52 19 Op 9 . - CDS 45190 - 46533 1568 ## COG0733 Na+-dependent transporters of the SNF family 53 19 Op 10 . - CDS 46610 - 47161 621 ## COG1335 Amidases related to nicotinamidase 54 19 Op 11 . - CDS 47158 - 48069 985 ## COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) 55 19 Op 12 . - CDS 48079 - 49761 2011 ## COG1109 Phosphomannomutase 56 19 Op 13 . - CDS 49754 - 50233 570 ## COG2606 Uncharacterized conserved protein 57 19 Op 14 42/0.000 - CDS 50299 - 51105 1150 ## COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components 58 19 Op 15 25/0.000 - CDS 51105 - 51770 245 ## PROTEIN SUPPORTED gi|90020817|ref|YP_526644.1| ribosomal protein S16 59 19 Op 16 . - CDS 51770 - 52726 1159 ## COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin Predicted protein(s) >gi|289656132|gb|ADCS01000058.1| GENE 1 298 - 468 136 56 aa, chain - ## HITS:1 COG:XF2742 KEGG:ns NR:ns ## COG: XF2742 COG0286 # Protein_GI_number: 15839331 # Func_class: V Defense mechanisms # Function: Type I restriction-modification system methyltransferase subunit # Organism: Xylella fastidiosa 9a5c # 2 51 152 201 519 65 54.0 3e-11 MDETEASKDLLGRTYEYCIAQFAAYEGTKGGEFYTPSSIVRTIVAILKSFNNCRVI >gi|289656132|gb|ADCS01000058.1| GENE 2 875 - 1117 302 80 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|299144397|ref|ZP_07037477.1| ## NR: gi|299144397|ref|ZP_07037477.1| hypothetical protein HMPREF0629_01280 [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 80 23 102 102 133 98.0 3e-30 MLPDNSTLKSSQISPVFGTVKVSVDKDTSVVFVDVETKEKFTIDSITDGLTEKIKLEKGH WYIVEGAGNITVSPVVVRIE >gi|289656132|gb|ADCS01000058.1| GENE 3 1428 - 1970 313 180 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|50365462|ref|YP_053887.1| acetyltransferase of 30S ribosomal protein L7 [Mesoplasma florum L1] # 7 176 3 169 170 125 40 7e-28 MIKNENLKLIIPTIEYEKEIQNFRQEFIKYGGSMDGCLSLRKMENISEWIKQVEDFSALE TCPKGFVPQTQFICLREADNKIVGVIQIRHYLNEFLGQYGGHIGYSVCSSERKKGYATFM LREILPICKELGLGKILITCLKDNEASKRVIINNGGIYESTVYEPTEKVSLERYWIDLSD >gi|289656132|gb|ADCS01000058.1| GENE 4 2062 - 2766 732 234 aa, chain - ## HITS:1 COG:no KEGG:Pmob_0418 NR:ns ## KEGG: Pmob_0418 # Name: not_defined # Def: hypothetical protein # Organism: P.mobilis # Pathway: not_defined # 1 234 1 235 235 199 48.0 7e-50 MSKKQLTPEQQRLDLDLMIIGIVTFAVFGIYAVYGTQMKDFITNSNINLVSRLLFNAGIQ FGVAGLGIVAVMILRKESFYEYGLKKKNILKSILGTILFFIPLIIYEFASGNFKGYRPFS SILIRDDVISGGFPINVLGMLLIILTWGFFEGVNYVVISDKINQRYPFKNIWINYGAIIC AIICLLFHPINTSFWGIIELITTFIAIYGMLVVKTETENAWGCIFAFCFIWNAL >gi|289656132|gb|ADCS01000058.1| GENE 5 2854 - 3336 566 160 aa, chain - ## HITS:1 COG:SP1384 KEGG:ns NR:ns ## COG: SP1384 COG4894 # Protein_GI_number: 15901238 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 1 160 5 163 165 83 31.0 2e-16 MHNLYVKQKVFKITDHYEVLDYNQNAVYYVDQDFKIIGNTVNVTKADGSGNFVIDREIFT LMPRYNVKFSDGRSFVIKQNFTFFRKDIDVISDEYSLKLEGNFLDLNFSIYDSERLVGEI SQEILAWGDTFVIRVIEPEYEEELLALLIAVDDIKDMQQH >gi|289656132|gb|ADCS01000058.1| GENE 6 3383 - 4024 897 213 aa, chain - ## HITS:1 COG:FN1417 KEGG:ns NR:ns ## COG: FN1417 COG0235 # Protein_GI_number: 19704749 # Func_class: G Carbohydrate transport and metabolism # Function: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases # Organism: Fusobacterium nucleatum # 1 210 1 212 222 226 53.0 2e-59 MLMEKERELVVEYGKKLITHGLTKGSGGNISIFDRENKVMAISPSGMDYFEIKINDIVIM NSDGNVIEGNLKPSSEWQMHLIYYNNREDVDAIVHTHSKYATAISCMGETLQPVHYLIAL AGFDVKCAKYATYGSVELAKNALEATEDRNAVLLANHGLIALGSSIEEAFSTAEHLEYVS ELYYLTKLIGGGNLLTKEQLEEVMKKFKSYKYK >gi|289656132|gb|ADCS01000058.1| GENE 7 4036 - 5088 1176 350 aa, chain - ## HITS:1 COG:FN1413 KEGG:ns NR:ns ## COG: FN1413 COG0182 # Protein_GI_number: 19704745 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family # Organism: Fusobacterium nucleatum # 1 350 1 349 349 423 62.0 1e-118 MIRQDNDLAFMLKYENVAWYENGAVKILDRRVYPTEIKFVTCHSYIEVAEAIADMVTQSA GPYTAAGMGMALAAYECRNMKWEDILSYLEKASCILSHARPTTVERMKKVTEGCLNAVKN FADSGRAFDEIIFERTLESLNRRYFTMSIVAKNLVNLFPDNGSIMTQCFGETIVGTMLRE AKQRGKDIKLFVPETRPYFQGARLTASVARQQGFDTIVITDNMPAFVMKNNKIDLFTSAA DVICMDGHVVNKIGTYQIALCAKYHGVPYFVTGIPDEKNSDISSVTIEYRDSRLVLEARG IKNTLDGVCGYYPSFDITPPHLVSGVVTDKGVYVPYNLKRYFETEVKEYY >gi|289656132|gb|ADCS01000058.1| GENE 8 5098 - 5919 925 273 aa, chain - ## HITS:1 COG:BS_pnp KEGG:ns NR:ns ## COG: BS_pnp COG0005 # Protein_GI_number: 16079406 # Func_class: F Nucleotide transport and metabolism # Function: Purine nucleoside phosphorylase # Organism: Bacillus subtilis # 9 272 6 269 271 273 50.0 2e-73 MNYDYEYFKESADYILSKINFRPSIGIVLGSCLGELSDEIENQVIIDYDEIPNFLKSTVK SHAGRLILGQLKGKDVICMSGRFHYYEGYEFEQLVIPIRVFKLLGVETVILTNAAGAINI SYNTGDIMLIEDHIKFMGSSPLRGNNFDEFGPRFFDMSNAYDRELREIVKKSAKDLGINL KEGIYFYAEGPQFETPAEIRAMRAMGADAVGMSTVTEVITAIHCNIKVIGLSLISNMAAG VLNNRVTAEEVDIVASQLAEKFKRLVNEIVKKI >gi|289656132|gb|ADCS01000058.1| GENE 9 6023 - 6493 493 156 aa, chain - ## HITS:1 COG:CC1730 KEGG:ns NR:ns ## COG: CC1730 COG0386 # Protein_GI_number: 16125974 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutathione peroxidase # Organism: Caulobacter vibrioides # 2 156 5 160 160 207 61.0 5e-54 MIYDFKVKDTFGEEVSLREYDGYVMLIVNTASKCGFTPQFEGLELLYQKYKDKKFVIIGF PCNQFGNQDPGSNEEIRTFCSLNYGVSFPMMAKIDVNGENQAPLYKYLKSEKRGALLSSI KWNFTKFLIDRNGNVVERFAPTTTPEKLESEIENLL >gi|289656132|gb|ADCS01000058.1| GENE 10 6549 - 7196 506 215 aa, chain - ## HITS:1 COG:ECs3771 KEGG:ns NR:ns ## COG: ECs3771 COG1272 # Protein_GI_number: 15833025 # Func_class: R General function prediction only # Function: Predicted membrane protein, hemolysin III homolog # Organism: Escherichia coli O157:H7 # 12 214 16 216 219 140 41.0 1e-33 MEKAKRENLIIEIFNSASHGIGVIIGIVFLILMIFKFASIISASEFAGYIIYASCFIFMF LASTLYHGIQNEKAKGILRIFDHSAIFFFIAGSYTPIILTILEGKAKILFLSLIWTIAAI GFIFKLCTYGKYDKFKKLSVFIYVFMGWISIFMIKEILLKTSFTFLILIVSGGIIYTMGT YFYKKKLPLYNHIIWHFFVLAAAICHLVAIYNFLQ >gi|289656132|gb|ADCS01000058.1| GENE 11 7333 - 7692 262 119 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299144406|ref|ZP_07037486.1| ## NR: gi|299144406|ref|ZP_07037486.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 119 1 119 119 131 100.0 2e-29 MKYIKKLAPYVNILFIVTSTLIYIMSYLNYEPNFNFTWFLIFYLSLTFLAIIVNFTLMIF KLSVGISDKKYVKNFLISFLIYSMLSILLCFILKKCNTSNVICSIIIGFIIASTTTNKI >gi|289656132|gb|ADCS01000058.1| GENE 12 7842 - 8474 770 210 aa, chain + ## HITS:1 COG:SP0291 KEGG:ns NR:ns ## COG: SP0291 COG0302 # Protein_GI_number: 15900225 # Func_class: H Coenzyme transport and metabolism # Function: GTP cyclohydrolase I # Organism: Streptococcus pneumoniae TIGR4 # 27 210 1 184 184 288 70.0 7e-78 MIYCFRFVMEVLSLTMLFLFFERVIKIDNKKIEKAVTMILEAIGEDPSREGLVETPQRVA RMYEEIFSGLGQTAENHLSKTFELVDGNMVIEKDITFYSMCEHHLLPFWGKVHIAYMPNG RVAGLSKLARTVDVYAKKPQLQERLNLEIANAIMEYLNAQGVLVVVEAEHMCMNMRGVKR PGTKTVTSISRGILETDLNLRNEAYRLMNL >gi|289656132|gb|ADCS01000058.1| GENE 13 8471 - 8947 407 158 aa, chain + ## HITS:1 COG:CAC2925 KEGG:ns NR:ns ## COG: CAC2925 COG1418 # Protein_GI_number: 15896178 # Func_class: R General function prediction only # Function: Predicted HD superfamily hydrolase # Organism: Clostridium acetobutylicum # 5 158 8 161 161 116 43.0 2e-26 MINTNIILNLDFIKEKLSTLEYLERDRIYCRHNMMHFLSVARICYILCLENKINIDRDLV YSAAILHDLGRIEEIKSGIRHEIASCDVAKVALEYTNFSLDDKMLILSAIKNHRTKSDEI TFESLFYKADKLSRNCFDCMSSDVCNWSSEKKNHKITY >gi|289656132|gb|ADCS01000058.1| GENE 14 8958 - 9776 620 272 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148994682|ref|ZP_01823786.1| 50S ribosomal protein L13 [Streptococcus pneumoniae SP9-BS68] # 1 272 1 272 278 243 43 2e-63 MDYINISNLIVFANHGVFDAEKSLGQKFMIDLKLGINLQHCAITGDLTKSVHYGILAEDI TKLFKSKSNDLIETCAEEIAQFILKKYEIVEDVFVRVKKPWAPVMLPTDNIFIEIYRKRH FAFLGLGSNMGNSNEILASAVEMINDEYTTVVKSSKLYKTAPWGYTQQNDFLNQVIEIST TYEPLELLRHLQKIELDLGRKREIHWGPRTVDIDILFFDDFKMYHPDLIIPHPYISERQF VLEPMCDIAAHYIHPIFNKSMRVLFEELKANS >gi|289656132|gb|ADCS01000058.1| GENE 15 9869 - 11386 1346 505 aa, chain + ## HITS:1 COG:SPy0500 KEGG:ns NR:ns ## COG: SPy0500 COG0433 # Protein_GI_number: 15674605 # Func_class: R General function prediction only # Function: Predicted ATPase # Organism: Streptococcus pyogenes M1 GAS # 3 504 4 500 500 516 51.0 1e-146 MKLLIARGNEDINLLSDKVNQHGLICGATGTGKTVTLKVLCEYFSDLGVPTILSDVKGDL ANLCKIGTMNDKLNSRISELNLQNFEFKNYPITLWDVYGEKGLPLRITISEMGPILLSQI LELNDTQTGILNIAFRVADEQGLLLIDIKDLRSMLNYLAENKNKYSSLYGNITEQSISAI QRKILMLEDRGGDMFFAEPALDINDIFKKDTDGRGYINILSSKKLINNPTLYSMFLLWLL SELFETLPEIGNPEIPKLVFFFDEAHLLFNNAPKLIQDKIEQVIRLIRSKGVGIFFITQN PLDIPSTVSSQLGNRIVHQLRAFSPRELKAIKEISETFRPNPSMNISEEITKLKTGEALI SFLDESGAPSITNKALILPPHSSFDALTDDEYQYIISNSQLFYKYRELVDRESAYEILER KLTEQKQEIINTKQKIEELKLQREEEKLKAQREKELKKQQEYEERQRRKTQSAVTKGVDS FLNTMTRSIGREIARGLFGSITKKR >gi|289656132|gb|ADCS01000058.1| GENE 16 11465 - 12154 682 229 aa, chain - ## HITS:1 COG:FN0805 KEGG:ns NR:ns ## COG: FN0805 COG4912 # Protein_GI_number: 19704140 # Func_class: L Replication, recombination and repair # Function: Predicted DNA alkylation repair enzyme # Organism: Fusobacterium nucleatum # 5 229 19 251 251 121 37.0 1e-27 MDINKYIMDELFKNQDLEYREFNSKLIPNVNKDTMIGVRTPVLRNISKHILKNYNYDDFL NSIPHKYFEENNLHGFLIERENDFEKAIKLIDDFLPVVDNWETCDLFSPVIFKKYSEKSY AEILRWLESEHTYTKRFAIVSLMSKYLDERFETDMLYKVAEIKSDEYYINMAIAWYLSFA LIKQYDVAIKLIEEKSLDKFVQNKSIQKAVESRRISDDRKLYLKSLKIK >gi|289656132|gb|ADCS01000058.1| GENE 17 12164 - 14008 2125 614 aa, chain - ## HITS:1 COG:BH0052 KEGG:ns NR:ns ## COG: BH0052 COG0433 # Protein_GI_number: 15612615 # Func_class: R General function prediction only # Function: Predicted ATPase # Organism: Bacillus halodurans # 1 607 1 607 610 530 45.0 1e-150 MKVVGITTGQEVYIGSKDRNFRMNEFLIVEDEVQGDLVGEIVEAKTFNRYIPLNIGGDFI DNSVIESLRIMGYDVNDETIYIGRLRLLKEALYPVLTGSSVRVPKFSEVKKLIISTSPSD GLLLGVIRNTDSLTDDMNDEYKNLVETFEDGKFLNQKDVPYVFDYKSMHEYPHIGVFGGS GSGKSFGLRVVLEEIMQKNIPTIVLDPHYEMSFSQKSGGNIVRDYNDKFSALQIGVDIGI KFEELTVADIKNLLNTSSQLTDSMNNTVDTIFVRGNNYFSFFNKLKYLIEAQEVGSIEKI DEKIFYAEQEEKEEWEEKRKIFLKYDKTCPIQSVKGVMWRLAKLYNEGIFNRDITELVDG LKSGNLMVIQGSTRIIQVFSTYLLNKLYYERREYRESVYRAEAAEFFPPFIIVTDEAHNF APKGYDTPSKSILREIAQEGRKYGVFLILATQRPTLLDETITAQLNTKFIFRTVRASDID TIREETDISTDESKRLPYLTTGDVFISSAKMGRTSYVRIRAAHTQSPHKENPFDELSSIK LKDNAKFLNYVKEYMPISTSVDSLSIIRSIYEKYSVNYTVDQFNLKLKELENCGLIEVEE TFLGSQYKLKDGEN >gi|289656132|gb|ADCS01000058.1| GENE 18 14005 - 14949 1088 314 aa, chain - ## HITS:1 COG:no KEGG:BH0051 NR:ns ## KEGG: BH0051 # Name: not_defined # Def: hypothetical protein # Organism: B.halodurans # Pathway: not_defined # 6 312 7 315 317 173 34.0 6e-42 MSNLKDIETEIKNINTLLKNKYEEIFSMDMNRFRTEILNKAGKIKTLKKLSSDELLKFGL VVGVDGSTNRVGGAYPHYIELFQALAKPTVGERIFLNECYTPMIDGIIDNREFENKNRDK MLADIELKAALKSIEQHRPKILMMDGGLIRYKINNSDGYNELIENAEKNDVILVGVIKDL KTNIISRSVNRAENIYDREILYGRLLKGEIFEVFDAYNNKFQEGGLVSAFLRTSNSAMMV GLDLIESQREYLTDIANLVYTLTPENSRGVPLWLDIVDSEVKITDAIIKAMLEEYLDRDI YERFFISERDRRSL >gi|289656132|gb|ADCS01000058.1| GENE 19 14942 - 15754 977 270 aa, chain - ## HITS:1 COG:CAC0307 KEGG:ns NR:ns ## COG: CAC0307 COG0313 # Protein_GI_number: 15893599 # Func_class: R General function prediction only # Function: Predicted methyltransferases # Organism: Clostridium acetobutylicum # 2 267 6 281 282 234 48.0 9e-62 MIYFCPTPIGNLKDITERTLEVLNSVDIIAAEDTRVTLKLLNSYGIKKKLISYHKFNEVS QSENIVELSKDNDIAVVTDAGLPGISDPGEVLVKKLIEEKIEFKVLPGANAALTALVLSG LDTEHFIFYGFLNSKSSLRKKELENIKDLKFTLIFYEAPHRLKAMLDDLYEIFEDRKISI SRELTKIYETTYRGSLKSILNNFDDITLKGEFVIVVEGFCKKDEEIDIKSILEAKIQSGV KKSQAVKDVSKEYNLSKNEVYKISLEVFNE >gi|289656132|gb|ADCS01000058.1| GENE 20 15755 - 16450 652 231 aa, chain - ## HITS:1 COG:CAC0306 KEGG:ns NR:ns ## COG: CAC0306 COG4123 # Protein_GI_number: 15893598 # Func_class: R General function prediction only # Function: Predicted O-methyltransferase # Organism: Clostridium acetobutylicum # 13 226 20 242 244 106 30.0 4e-23 MKRDYVPGTKYIIYQDENSFKYGTDSLILSSFAKVKGVCADFGSGTGILCLRLIDKATKF INFEINENAVKLLNKSIIENHLDDKIINYNIDISDVKNFVLHQSVDTIVINPPYYNSGMR AGNDTIAKARHSERLDDFVNVAKYMLKNGGTLYIVIAVERMIDLFILLRDASIEPKKIRF VKKNFNTKASLILVKAVKQAKCGFNIEQDLVLYENDKISHDFEKIYNNEEI >gi|289656132|gb|ADCS01000058.1| GENE 21 16522 - 18321 1390 599 aa, chain - ## HITS:1 COG:no KEGG:FMG_1253 NR:ns ## KEGG: FMG_1253 # Name: not_defined # Def: hypothetical protein # Organism: F.magna # Pathway: not_defined # 17 512 16 500 586 227 32.0 9e-58 MKVIYKFKDTINKSFYSIKRFPIAMLCILLSALFFIIGVNKGSFPTGADNVGLDLTYTKI GYFLLMSSATFIFLKLFSESLSANVRNEEELKRFRLFKIFAYVINFPFLYGIYERVLFSD NGLFLYEIGYTYFGLLLFFAVSCAYISKLFYHKDYIAYALKIISSGIISVFYSLVLFFGM SVIYYSFKHLFGISISLEVYFNTAILIFLPFNGGIFLSGLPRCRDSFDNYEISKPIKILL AYILIPIFTVYAIIIYLYFAKIIFIREIPSGIVTNLVLWFSILTTILLFILGKIRDIFFV NCFRKVFPIAMIPLLGMMFYSIGIRVYQYGVTENRYFVIVGGIFCLISMLYYIFYNKNSN ITIPVVLSALILLSSVGPVSAYNVTASNQNARLNKLLYENNMLKGDKIIPNLNLEGDAKE EIIEIVKYMSNNHRTWELKYIPNDFTFDNENIEKVFGFKLDNIEQAIENDEIFYYEPNST SINIEGYTKLMQFEFYSSEPNTSSIGSYEATLDNGKVTIRYIDKDSKFDLTTFNVKDVFE KLKVIKKSNEIVDPEDLSIEGREQGINYKIIFVDLSLTGIQQKDSYYYLKFYLMAGKAN >gi|289656132|gb|ADCS01000058.1| GENE 22 18604 - 19335 545 243 aa, chain - ## HITS:1 COG:BS_truA KEGG:ns NR:ns ## COG: BS_truA COG0101 # Protein_GI_number: 16077216 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthase # Organism: Bacillus subtilis # 1 243 1 245 247 179 39.0 6e-45 MNIKLIVSYDGSSYHGFQIQPQASTVEGVLKNAIEDTVKHEIKLYTAGRTDSGVHAMGQC VNFYSETTINIGNLPKVINFHLPDDISVVGASYVDDDFHARYSAKGKYYRYMIYRGKYRN PLYRNRAMHFPYELNLKKMQSTLNYLIGENDYKTFMGRHAIVKDTIRRIDKIEVVEDGDF IYIDFYGKSFLKNMVRIIVGTAVEIARGRFEEEYMKYALNKKHRKAAGPTAPSYGLYLMK IYY >gi|289656132|gb|ADCS01000058.1| GENE 23 19332 - 20129 737 265 aa, chain - ## HITS:1 COG:CAC3100 KEGG:ns NR:ns ## COG: CAC3100 COG0619 # Protein_GI_number: 15896351 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, permease component CbiQ and related transporters # Organism: Clostridium acetobutylicum # 1 248 1 250 267 272 56.0 5e-73 MLKDITVGQYYPSNSVIHKLDPRTKIIVMLLFIVGIFFVNSYTPYLLVGAYLFMVIKLSH VPFSMVLRGVKPLKWILIITFVVNVLFMPGDILYKIGFIKITSQGIHMAIKMAIRLMLLV MGTSMLTFTTSPIEMTDGIEELLKPMKKIGVPAHEIAMMMTIALRFIPTLVEETDKIMKA QMARGADFESGNVLNRAKNLVPLLVPLFINSFRRADELATAMEARCYRGGEGRTKFKELS YKKIDSIAFALNLALIIVLVIWRYI >gi|289656132|gb|ADCS01000058.1| GENE 24 20122 - 20988 993 288 aa, chain - ## HITS:1 COG:CAC3101 KEGG:ns NR:ns ## COG: CAC3101 COG1122 # Protein_GI_number: 15896352 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, ATPase component # Organism: Clostridium acetobutylicum # 4 286 3 285 286 329 59.0 4e-90 MALVEIKNLTHVYGMGTAFEKNAIENINLNIEKGDFIGLIGHTGSGKSTLIQHLNGLIKP TDGSIIIDGKNISDKNVSLREVRQKVGLVFQYPEYQLFEETIGKDIAFGPINQGLNEKEV ECRVKDAMESVGLDYEYFKDKSPFELSGGQKRRVAIAGVLAMQPEILILDEPTAGLDPAG RDEILGEIEKIYHDREITILVVSHSMEDMASIAKRIIVMSKGHVMMDDTPREIFKREDEL VSIGLGVPQITSFMRELKKRGADINSDCITVEEAKLELEKFLRSKRNA >gi|289656132|gb|ADCS01000058.1| GENE 25 20979 - 21800 303 273 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 229 1 229 245 121 31 9e-27 MIEIKNVSFKYDETENSEYIIENLNLSIEKGEFVAILGHNGSGKSTLAKLINGLLLPSDG DVFVDEMNTKDDENLWKIRALAGMVFQNPDNQLVATVVEEDVAFGPENLGVPSDEIKKRV DFSLEAVGMNDYRKNAPHMLSGGQKQRVAIAGILAMTPDYIILDEPTAMLDPVGRKEVME TILMLNKTQNKTIVLITHYMDEAAKSDRLIVMEKGKVVLDGTPKKVFSNVNEVKKIGLDV PQVTELAWELKNSGFDINNEILSIDELVGEIWH >gi|289656132|gb|ADCS01000058.1| GENE 26 21899 - 22528 688 209 aa, chain - ## HITS:1 COG:CAC2969 KEGG:ns NR:ns ## COG: CAC2969 COG2094 # Protein_GI_number: 15896222 # Func_class: L Replication, recombination and repair # Function: 3-methyladenine DNA glycosylase # Organism: Clostridium acetobutylicum # 8 208 1 201 205 212 54.0 5e-55 MRNGRWKMKLNRNFYNRDTDKVARELLGKILVRKYNGVTLEAKIVETEAYLGFDDRASHT FNGRRTLRNEVMYGRAGHLYVYFTYGMYNLVNVVTNKVGLGEAVLIRAVEPVKNIDEFSK NRFGKNFEELSNYQKKNLTNGPGKLTIAMKIDRNDYGKDLLGNEIYIKDGYNFDFKTINS KRIGIDYAMEAKDFLLRYYIEDNEFVSVK >gi|289656132|gb|ADCS01000058.1| GENE 27 22494 - 22883 283 129 aa, chain - ## HITS:1 COG:MA0772 KEGG:ns NR:ns ## COG: MA0772 COG3339 # Protein_GI_number: 20089656 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Methanosarcina acetivorans str.C2A # 25 123 33 127 130 58 38.0 2e-09 MKIPLKILLRLKKSAERIYNDKDKFSELLEKIKHSRLNIDEFSKIKFELILLISMCYDFI KGRYKNIRKSDMLLIICAFIYLLNPMDIIPDMLLEIGFLDDLTILTYLISKIRLQIKNYE KWKMENEVK >gi|289656132|gb|ADCS01000058.1| GENE 28 22990 - 23847 881 285 aa, chain + ## HITS:1 COG:lin2818 KEGG:ns NR:ns ## COG: lin2818 COG4905 # Protein_GI_number: 16801879 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 4 267 7 247 270 120 30.0 3e-27 MIKILLFFIFAFLGWMTEVSYTYIDSKNYVNAGVLNGPICPIYGVGLMLILIFIYPQKNF MLVFFEIMLTATFVELITGIILEMIFKKKWWDYSDKPFNFKGYICLKYSIMWGIGGLLMC YIIFPVILNASNYFWSLPIIIPNLITSIIIILFLIDLTETALTVLKLRKHFYELDKIAAN LKVISNDISSKLVKNIENVEIRTTEIKEDIEFISENKPAVDLMLKNYKNEKYRELDRIKD KYNKLLKANMFNLPRHKRLLNAFPNLKREHSRLKEFIEKAKTDIR >gi|289656132|gb|ADCS01000058.1| GENE 29 23888 - 24517 746 209 aa, chain - ## HITS:1 COG:BS_pyrE KEGG:ns NR:ns ## COG: BS_pyrE COG0461 # Protein_GI_number: 16078620 # Func_class: F Nucleotide transport and metabolism # Function: Orotate phosphoribosyltransferase # Organism: Bacillus subtilis # 4 209 11 216 216 245 58.0 5e-65 MKEVAKILLDIKAVTLSPRAPYTWASGIKSPIYCDNRLTLSYPKERKVVEEGLKKLVEEK FPQAEYIMGTATAGIPHAAIIASELNLPMGFVRSSNKDHGKQNKIEGKIIEGAKTVVVED LFSTGGSSIEAALALRSAGFDVLGIVSIFTYNLHDAEENFKKNNIVHYSLTNFEELSDVA NEINYIDDEELKMLEAWRKKPKDESWINK >gi|289656132|gb|ADCS01000058.1| GENE 30 24521 - 25222 936 233 aa, chain - ## HITS:1 COG:SA1047 KEGG:ns NR:ns ## COG: SA1047 COG0284 # Protein_GI_number: 15926787 # Func_class: F Nucleotide transport and metabolism # Function: Orotidine-5'-phosphate decarboxylase # Organism: Staphylococcus aureus N315 # 6 231 6 229 230 236 53.0 2e-62 MNRDVIIALDFESKAKALDFLDMFEDKLYVKVGMELFYKEGPSIIEEIKKRGHKIFLDLK LHDIPNTVAKATISIMSLNTDMINYHIAGGREMLKGAVDEAKKINKDVVTLGITMLTSTS DEMMHDEILIDNKYSVKDTVIKYAMIGKESGLIGVVCSALEVPKIKEILGDEFICVTPGI RLKTNSSDDQKRVVTPEDARELGSDYIVVGRPITKAENPVSAYKEIRKMFLGE >gi|289656132|gb|ADCS01000058.1| GENE 31 25326 - 27155 1865 609 aa, chain - ## HITS:1 COG:no KEGG:Apre_1818 NR:ns ## KEGG: Apre_1818 # Name: not_defined # Def: copper amine oxidase domain protein # Organism: A.prevotii # Pathway: not_defined # 489 608 398 525 527 91 42.0 1e-16 MKSNKKLGTILLAGAMVLSAVPTVTFATESNAALYTSSYGWPYNNHTVKYYLNGYECNDS DVTVRDSAGNYVYNIHNLKNGEYTATLRRNGYSDVTYRFTLTNSDSNVNIEFGRGNSYNS YGIAIRNVSTSVRNRITGYTESYASIALYDGYSKLKEVTADGNGYFTMDYNLDSYGNGYN NGYNNGYYNGYRRLSPSVGYNSVTGSDAPRNALINVYDSYNNRIGSGYSDSYGNYNISFS SSYQGSLSGIYATVADYNGYNNGYYNGYRRLNPSVGYNSVTGSDAPRNALINVYDSYNNR IGSGYSDSYGNYNISFSSSYQGSLSGIYATVADYNGYNNGYYNGYGNYKNLYLVATKGGY TSDKYYLSGVNNNTSYETAKEAKVTNANPNTSFINGYNVNAGASVSVKDSSGTTLGTATA DANGYFVIYTNRALKSEETLTFTTHVSNSSKDAISTYKVGSDTTKTTTTSTKFKSEFTIG SSKIEKTVDGVSTLKYMDVVPYIKDGRTMMPVRYVAEALGYTVTYNKTTRMASFTNGSNV VLINIDSDEFYVNGEKHTFTVKPEIKDGRTMLPISEVGKALGLTHGNKGEGKNIEWDAEN KTVTIQKDK >gi|289656132|gb|ADCS01000058.1| GENE 32 27462 - 28082 719 206 aa, chain - ## HITS:1 COG:CAC3094 KEGG:ns NR:ns ## COG: CAC3094 COG1392 # Protein_GI_number: 15896345 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate transport regulator (distant homolog of PhoU) # Organism: Clostridium acetobutylicum # 34 205 35 209 210 78 28.0 1e-14 MNIESFDYFRIFTEMVEGSMAAARLLDEIIKEYDPLTLEVRIKQMHDIEHSNDLIVHEAI THLIRDFLPPLERDDISSLLEELDNPTDSIEDVLFSLYMYNVKEIRAEALEFSSLIIEAT DALYDAFIEFKKFRGENSTKEKIITVNDIESNGDKLYIKTMRNLYTNCNNDKEIIIWTKI FDKLERCLDDLERVANSVESIMISSK >gi|289656132|gb|ADCS01000058.1| GENE 33 28084 - 29124 1144 346 aa, chain - ## HITS:1 COG:SA0619 KEGG:ns NR:ns ## COG: SA0619 COG0306 # Protein_GI_number: 15926341 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate/sulphate permeases # Organism: Staphylococcus aureus N315 # 29 341 21 331 335 147 30.0 2e-35 MGFLSLIQEMSKSTSAIILILLLIGIVVISGWTDAPNAIATCVSTRVIYINYAICMSVVF NFIGILLYEKFGGKVVLTVYEMFDFSSSKFSAGALIAAFVTIIIWGLVAYIKDIPTSSTY ALIGALTGSSLAIHAGVGGINIYSFIKVIAGIVLSTTMPVIFGYIIVTLIKKICRNKDRN KVKKMFDRGQILSGALNALMHGAQDGQKFIALFLLVIYLFKISPTINSGLVGIALLIAIL VGLGTSLGGVRAIRNTGVNVVNLESYEGISSDFASSLTLFILTVMGIPVSTNYAFSSALV GVGVSKRVSNVNWSYAKYIFLIRLLAFPICILCAYIFTKIIMIIGG >gi|289656132|gb|ADCS01000058.1| GENE 34 29134 - 30489 1540 451 aa, chain - ## HITS:1 COG:CAC0479 KEGG:ns NR:ns ## COG: CAC0479 COG2848 # Protein_GI_number: 15893770 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Clostridium acetobutylicum # 1 451 1 451 451 581 68.0 1e-165 MDNRKILETIRMLEQENLDIRTVTMGISLLDCIDSNAENANRKIYDKMMRCSEKLVDTTS EVSKLYGIPIINNRISVTPISLIAGATDLKNYVSFAKTLDKVAKNVGVDFVGGFSALVHK GFNKGDRILINSIADALSQTDFVCSSVNVGSTKAGINMDAVKIMGDVVLDLAYKTRENDS IGCAKLVVFANAVEDNPFMAGAFHGVGESDTIINVGVSGPGVVKCALEKVRGESFDVVAE TIKKTAFKITRMGELVGHEVSKRLNTGFGIIDLSLAPTPAVGDSVARIIEEIGVGKVGGH GTTAALAMLNDAVKKGGIMASSHVGGLSGAFIPVSEDEGMIAAANTGTITFDKLEAMTSV CSVGLDMIAIPGDTPASTISAIIADEAAIGVINNKTTAIRVIPVYGKSVGEEAKFGGLLG YAPIMDIGSTTSEVFSNRGGTIPAPIHSFKN >gi|289656132|gb|ADCS01000058.1| GENE 35 30498 - 30767 406 89 aa, chain - ## HITS:1 COG:CAC0478 KEGG:ns NR:ns ## COG: CAC0478 COG3830 # Protein_GI_number: 15893769 # Func_class: T Signal transduction mechanisms # Function: ACT domain-containing protein # Organism: Clostridium acetobutylicum # 1 89 1 89 89 76 48.0 1e-14 MKAVITFIGNDKMGIVYKATELVVKYHLNIVDINQTIMDEYFTMLMIVDISEKNVSFDEI VDGFTNLGKELGMYIKVQHEDIFKSMHQL >gi|289656132|gb|ADCS01000058.1| GENE 36 30859 - 31182 458 107 aa, chain - ## HITS:1 COG:no KEGG:Adeg_1221 NR:ns ## KEGG: Adeg_1221 # Name: not_defined # Def: hypothetical protein # Organism: A.degensii # Pathway: not_defined # 1 106 4 126 127 62 32.0 6e-09 MKVLFHVVELDKWEATLSNARDILQNDDDAVIEVIVMSKAASLFGGYSGYNFEGLFGNPR IRFTIGETALQENNLDKNMLPNGIFIEKSAITKMARLQNEGYAYIRL >gi|289656132|gb|ADCS01000058.1| GENE 37 31309 - 32304 1283 331 aa, chain - ## HITS:1 COG:CAC2709 KEGG:ns NR:ns ## COG: CAC2709 COG2025 # Protein_GI_number: 15895966 # Func_class: C Energy production and conversion # Function: Electron transfer flavoprotein, alpha subunit # Organism: Clostridium acetobutylicum # 3 325 6 332 336 224 39.0 2e-58 MKYENILIVIEAEDKKLSKLSIEMLSKGRNLADELDQKLFALIIGNKNENILNDTIMYGA DKVINVDNKFLENYTTMAYTKVLNNIIDEFNPLIILIPATENGKDLGGRICARRNIGLVA DCVDIVLTDEKDNFKCIRPTFDGSLLSDIRISSYPKIVTVSKSNFKASRKDINRQGEIVN FDSEITKSDILTEIVGVIKTNKKVSIEDANIIVAGGLGLEQPKNWHLVRELADVLGGAVS GSKPISDQLWIPADAFVGVTGLKVKPKLYIAIGISGSVQHLQGMRESGIIVAINKDPDAP IFKVAHYGMVGDLFEVVPMLIEKLKELKING >gi|289656132|gb|ADCS01000058.1| GENE 38 32313 - 33098 854 261 aa, chain - ## HITS:1 COG:CAC2544 KEGG:ns NR:ns ## COG: CAC2544 COG2086 # Protein_GI_number: 15895806 # Func_class: C Energy production and conversion # Function: Electron transfer flavoprotein, beta subunit # Organism: Clostridium acetobutylicum # 1 259 1 261 262 169 40.0 3e-42 MKYLVCIKQVPKINKVSIDPITKNLIRDGIKTIINPADVNALTLALKLKSQTGGSIAVLT MGPPQAIDSVKECIAMGADEGYILSGHEFSGADTLATSYSLYKAIEYIGNFDVVLTGDRT LDGDTAQVGSEIAEFLNFNQATFIKDANFKDGYFQVVRKLSDKLEKQNLRGKVLFTVIKD ANEPVNIRKKDMEMVDESKIKIIGSKDIGADLEKIGTKGSPTMVLETFSPKEHEKGFFLE GTNEKMVDKLIEILKNEGFAG >gi|289656132|gb|ADCS01000058.1| GENE 39 33214 - 34389 1458 391 aa, chain - ## HITS:1 COG:SA1524 KEGG:ns NR:ns ## COG: SA1524 COG0281 # Protein_GI_number: 15927279 # Func_class: C Energy production and conversion # Function: Malic enzyme # Organism: Staphylococcus aureus N315 # 8 391 7 390 409 393 53.0 1e-109 MENVYEVALKKHEEWKGKIDTNIRCEVRDAEDLSLAYTPGVAEPCRKIHEDVENAYKYTW KGNIVAVVSDGTAVLGLGDIGPEAALPVMEGKSVLFKKFGGVNAVPIVLNTKDPKEIIAT VKAIAPTFGGINLEDISAPRCVEIERTLIEELDIPVFHDDQHGTAIVVTAGLINAFKLLN KNPKDSVAVVSGAGAAGSSIIRMMKSLGVGNIYAFDSKGILSRKNFEKYNFVKKEILEIT NNDDEDLTIVEAMAKSDIFIGVSTAGVIDADMVKSMKKDSIVLAMANPEPEINYYVAKEA GARIVGTGRSDFPNQINNVLAFPGLFKGALSVRASKITEEMKMAAAVGIASMVSDKELSE EHIIPSIFEEGVSDAVAEAVSKCAIEQGLTK >gi|289656132|gb|ADCS01000058.1| GENE 40 34622 - 35641 1403 339 aa, chain - ## HITS:1 COG:BS_prfB KEGG:ns NR:ns ## COG: BS_prfB COG1186 # Protein_GI_number: 16080582 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor B # Organism: Bacillus subtilis # 4 334 32 362 366 370 56.0 1e-102 MRNKVKELNDKQMDVGFWDNAENAQKVIREQNHYQSKIDKYDKLIKSINEAEDLIDLMEM EDDYSFYGDLKLDLENIEKLSNDFKLETLLNGEYDSNNCIISIHAGAGGTEAQDWASMLN RMYVRYAEKRGFRVETLDMLKEEEAGIKSVTLLITGDNAYGYLKGEKGVHRLVRISPFDA NKRRHTSFASLDVYPQLDDDNEVEIKAEDLKIDTYRSSGAGGQHVNTTDSAVRITHIPTG IVVQCQNERSQIQNRDKAMNMLKAKLIALAEEEKKEKIEDLQGNYSQIAWGSQIRSYVFQ PYTLVKDHRTNTEIGDVNKVMDGYLDEFINSYLQLNASK >gi|289656132|gb|ADCS01000058.1| GENE 41 35758 - 36870 827 370 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764768|ref|ZP_02171822.1| ribosomal protein S5 [Bacillus selenitireducens MLS10] # 3 369 22 390 397 323 47 2e-87 MISISNNKNIVNKFFKFLFTIIGAGLGIVIVAFIKNFDFMYGLDSKITLAISILIILLFA LIFFIFSPKALKLIESLLDKWEDELKDRSFSEIAVGSVGLIIGLVIAFLLSQPVYKIPVP YVGFAISIILYGMVGYLGVKIALRNRKDVALKVKEIAGSVKAPSKEKVKAQKFKGVPKIL DTSVIIDGRVKDICKSGFLEGPLVVPVFVLEELQHIADSSDGLKRNRGRRGLDIIKDMQD DDALEIIIFQGKYDDIKEVDSKLLQLTKDLNGKIVTNDYNLNKVAAVQDISVLNINELAN SVKPVYLPGEEMQIQIVKLGKEHGQGLGYLDDGTMIVVEAGKPYLGETIDVVVTSVLQTS AGKMIFAKPC >gi|289656132|gb|ADCS01000058.1| GENE 42 36875 - 37360 686 161 aa, chain - ## HITS:1 COG:MT3689 KEGG:ns NR:ns ## COG: MT3689 COG1329 # Protein_GI_number: 15843196 # Func_class: K Transcription # Function: Transcriptional regulators, similar to M. xanthus CarD # Organism: Mycobacterium tuberculosis CDC1551 # 1 141 2 141 162 127 44.0 9e-30 MFDIGDKVVYPMHGAGVIVAIEDREILGEIRKYYILKMPINDMKVMVPVENADEVGVREI LDEDKMNLVLEVLSCNEITNMPKNWNRRYRFNMDRIKSGNIEEIAKVVRCLERLDSKKSL STGERKMLNGAKQIIVSEMVLVYNKSVEEITELVDKKVLDN >gi|289656132|gb|ADCS01000058.1| GENE 43 37596 - 38456 729 286 aa, chain - ## HITS:1 COG:no KEGG:CKR_3411 NR:ns ## KEGG: CKR_3411 # Name: not_defined # Def: hypothetical protein # Organism: C.kluyveri_NBRC # Pathway: not_defined # 1 280 13 301 306 124 32.0 3e-27 MKIQEVKNMTGLTRKAIEYYIEKNLLEVKLDENGYRNYSYENIKLLNKIKILRKFNLSIS QIKEVLENPKKFEMISNNHLRNMERNQRRMELFKQYLEKNDDAKILQALEQIENERMLEE KFLEAFPGVYGQLIFMSYLPFLKINIESEEQQQIYNELIDVVDELPKFELPKELEEEFEN EFSDYELFQEVNESKIAAVSNFDRFLNENKDIISEYIKFKNTDEYKDISSVKIGNLLKEY MKNCNYYEKVIPLMRKLSPDYNLYYENLEKANKKFLEKYPDCEFER >gi|289656132|gb|ADCS01000058.1| GENE 44 38565 - 40436 1372 623 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 [Rickettsia canadensis str. McKiel] # 1 623 1 615 636 533 45 1e-150 MNKRVSGVTLYIALIFLILIGFKLFNPPVETIPETSVTEFVRELEKENVKSIDFESGRVT YITKDAKSYVTILPDEARLSIFDNYVSKQMEDGKIEVKGIPMKTTPIYIQYIPEILTVVV IIGVWYFIIQQSQGGGKATSFGKSKARVIKQDDKNLVTFNDVAGLMEEKEELEEIVDFLK NPKKFVNMGARIPKGVLMVGPPGTGKTYLSRAVAGEAKVPFFIMSGSDFVEMFVGVGASR VRDLFENAKKNAPCIIFIDEIDAVGRRRGAGLGGGHDEREQTLNQLLVEMDGFGSNEGVI VMAATNRADILDPALLRPGRFDRTVYVGRPDVRGREEILKVHSKNKKIAEDVDFKVVAKR TPGFTPADLENLMNEAALLAARRNEEKIHMEDVEEASIKVQAGPAKKSKVVTEKERKLTA VHEAGHAVVSKSLPNSDAVHMITIIPRGMAGGFTSYIPEDDISFMTKRQMETELISLLGG RVAELLVLEDISTGAQNDIERATAIARAMVTEYGMSEKLGTINYGSEGNEVFIGRDIGKS KNYSEKTAAEIDEEVSRLINTAYEKAKQILSDNMDKLIRVSDALLEKETIDRAEFERLYD GIEELKTENTQENKETSEETDTI >gi|289656132|gb|ADCS01000058.1| GENE 45 40489 - 41016 573 175 aa, chain - ## HITS:1 COG:BH0084 KEGG:ns NR:ns ## COG: BH0084 COG0634 # Protein_GI_number: 15612647 # Func_class: F Nucleotide transport and metabolism # Function: Hypoxanthine-guanine phosphoribosyltransferase # Organism: Bacillus halodurans # 3 175 4 178 179 183 57.0 2e-46 MTDIKEILFSEEEIREKCIELGKKISSDYDGEIVVVGILKGAVPFMAELIKRIENPVVMD FMDVSSYAGSTTSGEVRILKDLEFRIEGRDVLIVEDIIDTGLTLSYLIEILKKRGAKSIE ICTFLTKTARRRKNVDVKYVGYEVEDYFVVGYGMDYNEKYRNLPYIGILDESVYK >gi|289656132|gb|ADCS01000058.1| GENE 46 41003 - 42346 1189 447 aa, chain - ## HITS:1 COG:CAC3204 KEGG:ns NR:ns ## COG: CAC3204 COG0037 # Protein_GI_number: 15896451 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Predicted ATPase of the PP-loop superfamily implicated in cell cycle control # Organism: Clostridium acetobutylicum # 1 443 1 460 461 222 33.0 1e-57 MNKKFLENIKKFNMLCKNEHIIVAVSGGADSMFLLSNLVELKTELGLKITVAHINHGVRR TSLRDENFVIDKSEKFGVDVKIRRVDMEAYAKEQGLTDEEAGRVLRYKFFRELSKGKDKI FLAHNANDQAETVLQRIIRGTGIDGLSAMDYVSCDLYRPMLNIKRDEIIDYINKNNIEYV DDETNFMDIYGRNKIRLNVIPYIEENFNENFVDSLIRLSEISSENFKFIKRQVDDYISYN YYDSSLNISNLVNKDKYFISEVLRGFLKIELGTIEGISSVNINDIIEMILSKDSSSVTLT KGKEIELSYNKIYLKREHSLQNEEFIPLKEGINETVFGKIRLVYNGVYTNSKNLVSIDAD KLNGTLNIRSRRNGDKFIPLGMTNYKKLKDFFIDEKIERRKRDIIPLVCDDNEIVWVVPY RLSGKYSVNKDTKNIVNIILEEKNDRY >gi|289656132|gb|ADCS01000058.1| GENE 47 42393 - 42794 317 133 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|168187048|ref|ZP_02621683.1| ribosomal protein S1 domain family protein [Clostridium botulinum C str. Eklund] # 1 132 1 135 135 126 48 2e-28 MALAVGQIVDGVVSGVLKFGAFINLPEDNSGLVHISEISDSYVENVSDFLKKGQKVKVKV LSLDDRGKIALSIKQAQVKSSKPAELDFSRRDENLSFEDKLSKFLKDSNEKFEQVRSREN YKMAGQRSRNKSN >gi|289656132|gb|ADCS01000058.1| GENE 48 42814 - 43131 427 105 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|299144439|ref|ZP_07037519.1| ## NR: gi|299144439|ref|ZP_07037519.1| putative septum formation initiator family protein [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 105 17 121 121 164 100.0 2e-39 MKQKKFFPILCAIIILSSVIYGAFVVSNSASEKHNKMAEILSNDKEIEQLKKDIENLKAE IGNSDSTEFIEKVAREDLGMVKPREIIYIDKEKVSKNDNNLLESN >gi|289656132|gb|ADCS01000058.1| GENE 49 43196 - 43438 316 80 aa, chain - ## HITS:1 COG:CAC3210 KEGG:ns NR:ns ## COG: CAC3210 COG1188 # Protein_GI_number: 15896457 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) # Organism: Clostridium acetobutylicum # 1 79 1 79 84 80 58.0 8e-16 MRVDKYLKVSRIIIRRTIAKEACEGGRVLINDKVAKPSDEVKEGDILKVSFGNKPFKAKI IDVRETVAKKDASSLYEIIE >gi|289656132|gb|ADCS01000058.1| GENE 50 43483 - 43761 552 92 aa, chain - ## HITS:1 COG:CAC3211 KEGG:ns NR:ns ## COG: CAC3211 COG0776 # Protein_GI_number: 15896458 # Func_class: L Replication, recombination and repair # Function: Bacterial nucleoid DNA-binding protein # Organism: Clostridium acetobutylicum # 1 92 1 91 91 93 66.0 7e-20 MNKSELVASIAQKSNLTKKDAEMALNGFLATVEEALAGGEKVQLVGFGTFEVRERKAREG RNPRDPKEIIKIPASKAPVFRAGKALKEVVNK >gi|289656132|gb|ADCS01000058.1| GENE 51 43775 - 45121 1425 448 aa, chain - ## HITS:1 COG:CAC3212 KEGG:ns NR:ns ## COG: CAC3212 COG3956 # Protein_GI_number: 15896459 # Func_class: R General function prediction only # Function: Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain # Organism: Clostridium acetobutylicum # 1 438 1 479 483 203 33.0 7e-52 MINIVGLGATDKYGLTLEAVEAVKNGNKNFIRTVFHEAVKYFEDEKIEFTSFDYLYEEKN SFEEVYTEIVEVLLNEAKDKDINYFVPGNPLIAESTVVKLMEKTQDYNIIMGMSFIEPVL RAVKRDPSKGLLLIDGDDFNPLDIDVKCDVIITQVYNNRIAVYLKLALSEIYGDEYKIYL ITDAGLRDEYVCYVPIYELDRIENINHQSAIYIPKCNDIKNFRDIILKADENIADFKNKE DIEVDVDRLITDAIDVINRCIILNDEGLYYFYEILEQLDKKLTKNREFLKNSVEKTNNIG YNDNSLRYNNRAFVNSLKNFSGSSINRAASVIDSVVSIGFVWDDVNGVLEKVAEELNELK LALNSKNSREISEEVGDLIFTSVNLCRFLKEDPSQVLDSTTNKFIERFSVMSKLASEHNM DLKALKLNELEDLYNEAKEILKTKNNLL >gi|289656132|gb|ADCS01000058.1| GENE 52 45190 - 46533 1568 447 aa, chain - ## HITS:1 COG:FN1944 KEGG:ns NR:ns ## COG: FN1944 COG0733 # Protein_GI_number: 19705249 # Func_class: R General function prediction only # Function: Na+-dependent transporters of the SNF family # Organism: Fusobacterium nucleatum # 14 447 22 459 459 381 50.0 1e-105 MIEGGDILDNKYSRDKFNTGWGFILACIGSAVGMGNIWMFPIRVHKFGGAAFLIPYLLFV LLIGRIGIIEEMSLGRAFKSGPLGAFNAATKTRGSSVGKYIGIIPVIGSFGIAVGYSVVV AWIIRFVLGAFTGSMLNSANSGEYFGAIAGPFGSIIWHLIAIIICFIIMVFGISNGIEKV NKIMMPAFFMLFVVLAIKIATVEGAADGYKYLLTPDWSKLANSQTWIYALGQSFFSLSLA GSGTVVYGSYLNDNENAPRSAKFTAIFDTAAAILAAMVIIPAIYAYKIETSGGPPLMFIT MPEIFKNMYGGRIFSIIFFVAVLFAGITSLINLYETPVEMIEQKFKLSRATSVGIVLSIG FIVGIFIENGNTLGMWMDAVSIYIIPFGALLSAIMFSWICSKEFVLKEVSKGCLNPVREG YYYMLKYLYCGVTLAVYLIGLFKGSIG >gi|289656132|gb|ADCS01000058.1| GENE 53 46610 - 47161 621 183 aa, chain - ## HITS:1 COG:PA3846 KEGG:ns NR:ns ## COG: PA3846 COG1335 # Protein_GI_number: 15599041 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Amidases related to nicotinamidase # Organism: Pseudomonas aeruginosa # 11 180 8 176 180 102 31.0 3e-22 MKNFSLDREKTLFLFVDIQDKLLAAIDNREEVLKNSKILAQMVSIMNINSMITVQYPKGL GYTNNSIKEFLKDTEEIEKKSFSCMLNDEFKKKISDSGKSQVVLCGIEAHICVLLTARDL IKAGYEVFIASDAIGSRSKFNYKNAMSQLKEMGCVLSNVESIMFDLNSVAGTEEFKSVQK LIL >gi|289656132|gb|ADCS01000058.1| GENE 54 47158 - 48069 985 303 aa, chain - ## HITS:1 COG:CAC2951 KEGG:ns NR:ns ## COG: CAC2951 COG1105 # Protein_GI_number: 15896204 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) # Organism: Clostridium acetobutylicum # 1 302 1 308 308 63 20.0 6e-10 MIVFCDFNPKLTRSYKVVDFVKNSENVYSESRTYASGYGIDMLTFLMQLGDRPRLITFLG GQNGVLIRENLDAVKADYDFIKIKDESSEEILIKSRSLKTIVRSKLPRITTEDEENLYTM FAREISFEKFVCIPQNDSFIRDELYESLIKLCYKEGIKVAVVVTELENLKNSKPYMMIVD KEQLEYYTNLKIKTQTEVVSAAGVILDSGTGIIIVNSEKGCVIVTKNKSYGVNFEELKYS VSRINKNLMLAAIAFGIEREYDFETTIKLGIASSIIENFIKFRMITMADIKKIMAEIELK EII >gi|289656132|gb|ADCS01000058.1| GENE 55 48079 - 49761 2011 560 aa, chain - ## HITS:1 COG:SPy1503 KEGG:ns NR:ns ## COG: SPy1503 COG1109 # Protein_GI_number: 15675406 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Streptococcus pyogenes M1 GAS # 2 559 3 563 564 592 51.0 1e-169 MYKERMNAWLNSQVISEESKEEIRSIKYETELEDRFYQDLEFGTAGLRGIVGAGTNRMNE YVIARASQGLANTIKNHGEEAVKRGIVIAHDVRFMSEEFTEIAARVFAANGIKTYLFDDI RPTPMLSYAVRYLKTVSGIVVTASHNPKQYNGYKVYWKEGSQILDDIANEILSEIKNLDF EDVITMDYDEAIEKGLIEILDHTIDQSYYKDTLAKGINDDLDKDICVVYTPLNGTGNKPV RHILRERGFTNINVVPEQENPDPTFATVGYPNPEDIKAFKYSVELAKKINADLIVATDPD CDRVAIMGKQKDGEYYAFNGNQTGALLLYYILNSLNQRNLISKNGAIVKSIVTGDLGKTI AESLSVKCYETLTGFKNICSLPNKWDISKESEFIFGYEESIGYVFGNHVRDKDGVISSMM IVEMASYYKKMGKNLVDVLYEIYEKYGYFKEHLMSIVLDGMEGKERILRMMKFFRESGFK EFAGLKVKEEIDYKNGYKDVGKSNVLIYHLEDGSWFAIRPSGTEPKIKLYIYAKDVAEDV AENKVGEIKEDVLSKLYSVK >gi|289656132|gb|ADCS01000058.1| GENE 56 49754 - 50233 570 159 aa, chain - ## HITS:1 COG:BS_yjdI KEGG:ns NR:ns ## COG: BS_yjdI COG2606 # Protein_GI_number: 16078271 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 1 152 5 158 159 155 51.0 4e-38 MKKTNAMRILDSNKVKYDIVEYSIDGGISGVEVASSLGEPVECVYKTLVTVSKNEHYVFV IPVARELDLKKAACISGEKKIEMLHSRDLLKTTGYIHGGCSPIGMKKQFKTYIDKTAEDR EYIYVSGGKIGVQVKLKPADLMKLIDAKFEDLTKEDENV >gi|289656132|gb|ADCS01000058.1| GENE 57 50299 - 51105 1150 268 aa, chain - ## HITS:1 COG:CAC2878 KEGG:ns NR:ns ## COG: CAC2878 COG1108 # Protein_GI_number: 15896132 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Mn2+/Zn2+ transport systems, permease components # Organism: Clostridium acetobutylicum # 1 254 2 255 268 150 39.0 3e-36 MEIFGYSYMIKAMLVGFVLSIIIPFMGIVIVNKKISVIGDALSHVSLAGVMIGLISGITP TLGAVITCIFAGLMLEYIRKKFPSYQEISTAIIMSTGIGLASILSGFVKKAANFESFLFG SIIAISPVEFYLIIIISIVVFFTFLYLYRDLMHISFDETSARLSGIDVDRVNTIFMILIA ITISVAAKTVGILIISSLMVVPVACAMKFEVGYFKTIIISSLFGVLFTMSGLVMSFYLGL KPGGTIVLIGVITLLIILAFSGRISKKR >gi|289656132|gb|ADCS01000058.1| GENE 58 51105 - 51770 245 221 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|90020817|ref|YP_526644.1| ribosomal protein S16 [Saccharophagus degradans 2-40] # 1 204 7 208 318 99 32 5e-20 MNDVILNVSNLSFGYNREKIFNNVNFEVDKGDFVALVGPNGAGKSTLIKLILGQLSPNDG RVDLFLDEKLGYRDVGYVPQLGIGSSYTFPITVGELVSLSLHDETRGFKVFKCNYKDKVL DALLQVGMEDEINSLYYQLSGGQRQRVLIAKALVSNPSFLILDEPTNGIDFETRQKLFSL LHHLNVAHGITILMITHELSDIENYISKLYKLFDGRIERCK >gi|289656132|gb|ADCS01000058.1| GENE 59 51770 - 52726 1159 318 aa, chain - ## HITS:1 COG:SPy0714_1 KEGG:ns NR:ns ## COG: SPy0714_1 COG0803 # Protein_GI_number: 15674772 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface adhesin # Organism: Streptococcus pyogenes M1 GAS # 30 313 29 315 322 236 41.0 5e-62 MFSIIIALIVFTVGCGNVGDKNNKTDEETEGKLKVYASIYPMYDFAGKIGGDKIDLNLVI PNGQEPHDWEPSQDDIKKLENADVFIYNGAGLESWTDDVLSSINNKDLAVVEASDRIELI EGHHHHHEEHEEAKEHNHHHEEHEHGLDPHVWISPKNAIIELENIAKAFSEKDPENAQYY NANLEKYKAEFEQLDKLYAEELAKVPNRTIVVSHEAYGYLCHEYGLEQVGIEGVNAESEP DAKTMAQIIEFVREKGINTIFTEELIEPKVADTIAAETGAKTVVLSPLEALSEEEIEAKA DYVSIMKSNLEKLVEALK Prediction of potential genes in microbial genomes Time: Fri May 27 07:52:20 2011 Seq name: gi|289656131|gb|ADCS01000059.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.59, whole genome shotgun sequence Length of sequence - 29621 bp Number of predicted genes - 29, with homology - 23 Number of transcription units - 16, operones - 7 average op.length - 2.9 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 278 372 ## COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin - Prom 329 - 388 13.2 + Prom 283 - 342 13.1 2 2 Tu 1 . + CDS 437 - 844 399 ## COG0735 Fe2+/Zn2+ uptake regulation proteins + Term 856 - 886 1.9 - Term 829 - 888 9.1 3 3 Tu 1 . - CDS 1108 - 2424 1605 ## COG0733 Na+-dependent transporters of the SNF family - Prom 2611 - 2670 9.7 - Term 2665 - 2722 -0.8 4 4 Op 1 . - CDS 2820 - 3326 638 ## COG0406 Fructose-2,6-bisphosphatase 5 4 Op 2 . - CDS 3422 - 5098 1586 ## COG0249 Mismatch repair ATPase (MutS family) - Prom 5251 - 5310 12.1 6 5 Tu 1 . - CDS 5335 - 5481 210 ## - Prom 5509 - 5568 10.1 - Term 5541 - 5592 4.2 7 6 Tu 1 . - CDS 5606 - 6550 1180 ## COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases - Prom 6640 - 6699 10.9 - TRNA 6719 - 6794 89.7 # Phe GAA 0 0 - TRNA 7057 - 7133 93.6 # Met CAT 0 0 - TRNA 7141 - 7231 63.6 # Ser GCT 0 0 - Term 7310 - 7347 6.1 8 7 Op 1 1/0.250 - CDS 7370 - 8251 1388 ## COG3643 Glutamate formiminotransferase 9 7 Op 2 . - CDS 8266 - 9801 1979 ## COG2986 Histidine ammonia-lyase 10 7 Op 3 . - CDS 9814 - 11154 1401 ## COG0160 4-aminobutyrate aminotransferase and related aminotransferases 11 7 Op 4 1/0.250 - CDS 11164 - 11718 793 ## COG3404 Methenyl tetrahydrofolate cyclohydrolase - Term 11738 - 11772 -0.5 12 7 Op 5 1/0.250 - CDS 11776 - 12996 1444 ## COG1228 Imidazolonepropionase and related amidohydrolases 13 7 Op 6 . - CDS 13015 - 14313 2031 ## COG2056 Predicted permease - Prom 14341 - 14400 7.9 - Term 14345 - 14387 11.2 14 8 Tu 1 . - CDS 14419 - 16173 2088 ## COG2987 Urocanate hydratase - Prom 16326 - 16385 13.6 - Term 16367 - 16398 1.4 15 9 Op 1 . - CDS 16402 - 17784 1788 ## CTC02567 glutamate mutase, MutL 16 9 Op 2 . - CDS 17796 - 20846 2272 ## COG3899 Predicted ATPase 17 9 Op 3 . - CDS 20868 - 21842 1040 ## FN1399 putative cytoplasmic protein - Prom 21907 - 21966 7.6 - TRNA 22078 - 22161 67.8 # Leu TAG 0 0 + Prom 22200 - 22259 9.8 18 10 Op 1 . + CDS 22334 - 22738 288 ## Ccel_3106 Zn-finger containing protein 19 10 Op 2 . + CDS 22803 - 23324 874 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins + Term 23340 - 23370 2.0 - Term 23326 - 23356 2.0 20 11 Tu 1 . - CDS 23357 - 24400 1071 ## COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair - Prom 24644 - 24703 9.7 + Prom 24415 - 24474 6.5 21 12 Tu 1 . + CDS 24498 - 25112 613 ## COG0560 Phosphoserine phosphatase 22 13 Op 1 . - CDS 25140 - 26930 2023 ## Dd703_1351 thioredoxin domain protein 23 13 Op 2 . - CDS 26927 - 27865 440 ## PROTEIN SUPPORTED gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 24 13 Op 3 . - CDS 27868 - 28656 838 ## COG0489 ATPases involved in chromosome partitioning - Prom 28680 - 28739 13.9 25 14 Op 1 . - CDS 28754 - 28891 253 ## - TRNA 28786 - 28874 68.1 # Ser TGA 0 0 26 14 Op 2 . - CDS 28837 - 29010 372 ## - TRNA 28881 - 28956 87.4 # Lys TTT 0 0 27 15 Op 1 . + CDS 28966 - 29121 130 ## - TRNA 28967 - 29043 79.2 # Gln TTG 0 0 - TRNA 29049 - 29125 89.6 # Arg TCT 0 0 28 15 Op 2 . + CDS 29152 - 29322 306 ## - TRNA 29153 - 29229 89.6 # Arg TCT 0 0 - TRNA 29235 - 29308 80.0 # Gly TCC 0 0 - TRNA 29336 - 29421 69.6 # Tyr GTA 0 0 - TRNA 29433 - 29508 92.8 # Thr TGT 0 0 29 16 Tu 1 . + CDS 29451 - 29619 115 ## - TRNA 29530 - 29606 85.0 # Asp GTC 0 0 Predicted protein(s) >gi|289656131|gb|ADCS01000059.1| GENE 1 2 - 278 372 92 aa, chain - ## HITS:1 COG:lin0191 KEGG:ns NR:ns ## COG: lin0191 COG0803 # Protein_GI_number: 16799268 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface adhesin # Organism: Listeria innocua # 7 92 7 86 312 75 43.0 2e-14 MNRKLKLFSIIIALIVFTVGCGNVGDKNNKTDEETEGKLKVYASIYPMYDFAGKIGGDKI DLNLVIPNGQEPHDWEPSQDDIKKLENADVFI >gi|289656131|gb|ADCS01000059.1| GENE 2 437 - 844 399 135 aa, chain + ## HITS:1 COG:RSp0247 KEGG:ns NR:ns ## COG: RSp0247 COG0735 # Protein_GI_number: 17548468 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+/Zn2+ uptake regulation proteins # Organism: Ralstonia solanacearum # 5 132 7 138 151 81 31.0 3e-16 MEKLLKKHNLKITKGRVEILKLLNKCNTAISADEVYSKIPHSSCRSIATVYRILNQLADL GILRKTLQQNGICYYEMHTHSHKHYIVCTKCGEIEPISECPMEPFEKEVSSTTGYKVTGH SIELKGICPKCQDIK >gi|289656131|gb|ADCS01000059.1| GENE 3 1108 - 2424 1605 438 aa, chain - ## HITS:1 COG:FN1989 KEGG:ns NR:ns ## COG: FN1989 COG0733 # Protein_GI_number: 19705285 # Func_class: R General function prediction only # Function: Na+-dependent transporters of the SNF family # Organism: Fusobacterium nucleatum # 4 418 5 418 438 407 52.0 1e-113 MKDKKNFSSQWGFILACVGSAVGMANVWGFPFRIGSLGGSAFLIAYLIFVAIFSYVGLSA EYAIGRHTGTGTLGSYEYVFKSRGHKKLGKVVGWIPLIGSFCIAVGYSVIVAYVLKALFQ SVTGSIMSVDTKAWFESFALTEYSVIPYHLVIVFGVIITLVVGTKGIEKTNKIMMPLFFI LFCILAVRVLFLKDSFEGYSFMFRPEWKDLTNPKVWIFAMGQAFFSLSVTGSGMIVYGAY LSKESDIVKSSVNTAFFDTIAAIVASLVIIPACFSYGVDVSSGPGLLFVTLPAILQDIPF GRVFAIVLFLAVVFGGITSLQNMFEVVIESIMYKFPHFKRRNILAVLAISLFAISVNMEA IFIWGPWMDFVSIYIIPIGALLGALTWFWILDPKELLSEINVGSSKKYSSSWHFIGKYIY VPLAAILCFIAVVKGISF >gi|289656131|gb|ADCS01000059.1| GENE 4 2820 - 3326 638 168 aa, chain - ## HITS:1 COG:FN0808 KEGG:ns NR:ns ## COG: FN0808 COG0406 # Protein_GI_number: 19704143 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Fusobacterium nucleatum # 5 156 38 194 206 68 32.0 4e-12 MAYSLKEQSKDVKFDHIYSSDLGRAYETAKIIAGERDIIQTKLLREINVGSWSGELFEDI KFKDKELYGKYFNEPQNYYRADGESIHDLNDRIQKFFKSYVYESNDENILIVSHGITIIS ILNLIEGVGIDKFWTNRVRRNAKFNIASYENGEFKMLVKAPKNEIMTI >gi|289656131|gb|ADCS01000059.1| GENE 5 3422 - 5098 1586 558 aa, chain - ## HITS:1 COG:CAC3563 KEGG:ns NR:ns ## COG: CAC3563 COG0249 # Protein_GI_number: 15896798 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Clostridium acetobutylicum # 7 543 31 566 577 208 29.0 2e-53 MDNLKMYDGLQYFLFIIIFIIGFLFIAEFLRKAKYLRLLREQVYYDFGRSPSDDKKNLKV ISKLYELGEKSDYTIDDITFNDLNMDSVFGKFDHTKSTIGSQYLFKFLRSPVFNKAHHDK LKSVREYFIENEEQAKEIQLEFAKVGNFKRDIIQIFYEGIDYERFAAYKLPTYVLSFSVP LILITGYINKGFGIIAGTCLILLNIYFSNKMKKATLGRVLDFINIYDVLLLAKDIENINC DVISEELDRIREINVTLKSIRKKVGSARIALNSQDTDLLKNLIDILIMYNARNFFKTADA INLNRDILIELYELLGKIEVYIAMTSLYLAIDAKDVEYVDEDFCLSAKNLRHPLLNRETQ VPSNFNFDYENVLITGSNASGKSTFLRSISISNIMAMTLGFVMADEYRTSMFYLQSAIDV RDSIEESMSYFLAETLAIKRMIDESKVKKLVVLDEIFKGTNTVDRISAAYNTLKYLANDK KIIAATHDIELTNLLKDTFKNYHFEEEIKDDDILFDYIIRKGPAISRNAIEILRVKGYPD EIVNNARKMAEELFEEKL >gi|289656131|gb|ADCS01000059.1| GENE 6 5335 - 5481 210 48 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKKYMVSLMWFFVGIVFIIVGYIQKQSIYYILGIVDIFFGIRTLRSVL >gi|289656131|gb|ADCS01000059.1| GENE 7 5606 - 6550 1180 314 aa, chain - ## HITS:1 COG:MA0592 KEGG:ns NR:ns ## COG: MA0592 COG0111 # Protein_GI_number: 20089481 # Func_class: H Coenzyme transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoglycerate dehydrogenase and related dehydrogenases # Organism: Methanosarcina acetivorans str.C2A # 1 312 1 300 523 194 38.0 3e-49 MKALIIDYMSDIIDEELVKLGFEVDKVMLPTAEKLAEIIAPYDLLCMRVDPHIRKEVIDA ATNLKAIMVGSTGMNHVDVEYAKSKGIEVCNSPGLNANAVAELVIGKMLETYRNSFQAID EVKNKHIWNKYRWIGREVRNKTLGIIGFGAIGRRVAEIAHVLHMDVIAYDPFVKPENNPI EYVKIISLDEVIENSDIITLHVPLTPDTKDMLNAAAMERMKDGAVIINCARGGIVNEADL YKYIKNGKLGGANLDTLADELGTGGLDSQDAHIESPLFELDRVFVTPHVGGSTIDAQDDI GRVVVQNVKKVFNL >gi|289656131|gb|ADCS01000059.1| GENE 8 7370 - 8251 1388 293 aa, chain - ## HITS:1 COG:FN1407 KEGG:ns NR:ns ## COG: FN1407 COG3643 # Protein_GI_number: 19704739 # Func_class: E Amino acid transport and metabolism # Function: Glutamate formiminotransferase # Organism: Fusobacterium nucleatum # 1 293 1 293 293 484 82.0 1e-137 MSKVLMAEVNISEGTNLDLVNEVKDAFLSVDGITVVDIDSNEDHNRTVFTYKGEPEDVLE ATKRLAAKAVELIDMTKHKGSHPRMGAVDVVPFIPVREVTTDEAVEISKRFGKYLGELGV PVYFYEDTQEREYRKALPKIRKGQYEALEEKMKDPEWEPDEGPKEFNPKSGATVTGARFP LVAFNINLDTHDIEIGKKIVKSVRAATGGYTFIRAIALELEERKQIQVSMNMINYEKTPI HRVFETIKSEAQRYNVNVVDTELVGPVPIYALRDVLDFYLRIADSFSVDQIYF >gi|289656131|gb|ADCS01000059.1| GENE 9 8266 - 9801 1979 511 aa, chain - ## HITS:1 COG:FN1406 KEGG:ns NR:ns ## COG: FN1406 COG2986 # Protein_GI_number: 19704738 # Func_class: E Amino acid transport and metabolism # Function: Histidine ammonia-lyase # Organism: Fusobacterium nucleatum # 1 511 1 511 511 849 82.0 0 MERVIKINGNDLTIEDVVAVARFGAKVEIDENQKAAILTSRQYVEDALANGQAIYGINTG FGKFSTVSISEEQLDLLQKNLIYSDACGVGEPFDTEVVRAMMILRANAVCKGFSGVLMTT IECLVNMLNAGVHPIVRSKGSVGSSGDLCPLAHMVLPMMGEGEAEYKGEVLSGKEAMQRA GVETIVLKAKEGLALINGTQAMMGNAVLAVYDAEKLLKQADIVSSLTVDSLEGIIDAYDE RIQIIRPHQGQIDVAENMRRLLEDSKRVTRQGEKRMQDAYSLRCIPQVHGASRLAFEYVK KTVETEINSVTDNPLIFPGENGACISGGNFHGQPIAIAMDTLGILVSEIANISERRIEKL VNPALSHGLPAFLVKHGGINDGFMIPQYVAAALVSENKVLAHPACVDSIPTSANQEDHVS MGTIGARKARTIINHAQHVISIELLCGAQAADFGETNSLGKGSIEAYKLLREKVDFMEND VIFYPDMDKAFELVESGKLLDRVEQAVGKLK >gi|289656131|gb|ADCS01000059.1| GENE 10 9814 - 11154 1401 446 aa, chain - ## HITS:1 COG:SA2397 KEGG:ns NR:ns ## COG: SA2397 COG0160 # Protein_GI_number: 15928190 # Func_class: E Amino acid transport and metabolism # Function: 4-aminobutyrate aminotransferase and related aminotransferases # Organism: Staphylococcus aureus N315 # 4 446 15 457 457 394 44.0 1e-109 MKQKNQLLISEDEKYIAKCSRAPYLPIVANRAKGVIVEDLDGNEYIDMISSACVLNTGYN HENVLDKVSKQLDKFIHFSNDYFYTEPQVELAKKLVKITPGNFEKKVIFGFSGSDSIDSA IKATRSYTGRSKIISFVGAYHGSTYGAISISAIDLNMKKRIGPLLPDVFHFSYPLITEKK NDETEDEYSDRKFEEFKKPFDYYLPVEEVAAIFIEPIAGDLGLIPPPKKFMKLLRKFCSE NGILLVADEIQQGFGRTGKWFSIEHFDVEADLIVMGKAMASGFPMSAVVGRREIIDSIAM PGQLFTLQGNAVCAGAAIATIEIIENEKLLDRAVKLGDYIKERFKLISKNSSVIKDVRGL GLTIGVELEDRNKIISSSDIAKKICYRCFEKGVILIYIGGNTLRVQPPLVMTNDEAQRAM NIIEEVFCEYENGKISDSILDKIQGW >gi|289656131|gb|ADCS01000059.1| GENE 11 11164 - 11718 793 184 aa, chain - ## HITS:1 COG:FN1405 KEGG:ns NR:ns ## COG: FN1405 COG3404 # Protein_GI_number: 19704737 # Func_class: E Amino acid transport and metabolism # Function: Methenyl tetrahydrofolate cyclohydrolase # Organism: Fusobacterium nucleatum # 1 184 6 189 189 254 77.0 5e-68 MDYKKIFDLILDENDFTVGGGSSSAIAGAMACGLMGMVANLSKGKAYGHTDEEYDAIIAE LNDMKANFLQSAVDDNKAYMLIVNAYKLPKETDEQKAERKKAIQNAGIEAAKVPLLNALL NKRVNEIGKDLLEKSNPACMTDLKAGVDLSKVGLDSGKANVEVNLPLIKNEDIVNEFKEK MAQL >gi|289656131|gb|ADCS01000059.1| GENE 12 11776 - 12996 1444 406 aa, chain - ## HITS:1 COG:FN1404 KEGG:ns NR:ns ## COG: FN1404 COG1228 # Protein_GI_number: 19704736 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Imidazolonepropionase and related amidohydrolases # Organism: Fusobacterium nucleatum # 1 405 1 405 406 603 72.0 1e-172 MSYILLKNCRELLTVKEDANDLIGLLNGKSLLIKDEKIEKIGDYDKLISLVNGAECKEID CSNKVVLPGYVDCHTHLIFGESRVDEYVASLTMGPEDIKKVVPRTGLEASIYSTKNATDE ELVNTSLTKLNRMLRLGTTTVEIKSGYGIDKKTELRLLRLLNKVRQNTSQTILSTYLGAH YFDLEMGKDKYIDFMIKEVMPIIKEENLASFSDVWCDDGYYTAEDSYKILKAGLDFEMIP TMHTECYSAIGGARVAAQLKAANVGHLNYLTREDTKLLRDAGVVGVLIPGTDFSVKHKRP FDPRPMIEEGLTIAIATNLNPGNWIESMQLSMALACRDHCMTEKEAIRAATLGGAKALRI DNEVGSLEEGKFADIQILNSDSYKNCIYKLAVNEVESVIKKGKIVI >gi|289656131|gb|ADCS01000059.1| GENE 13 13015 - 14313 2031 432 aa, chain - ## HITS:1 COG:FN1403 KEGG:ns NR:ns ## COG: FN1403 COG2056 # Protein_GI_number: 19704735 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Fusobacterium nucleatum # 1 432 1 435 436 580 78.0 1e-165 MILLNPIVISVIVLSALCLLKLPVLAALLIAAITAGLAAGSTISETMTTFVGGMGGNANT ALSYVLLGALAYTINKTGAANILAKKISRLVNGNKFTLSIIIVLVAMASGTIVPVHIAFI PILIPPLLILMNKMKMDRRMLAICFGFGLKAPYITIPIAYGAIFHGIIKDSVNAAGLDVS LDLIWKTNWMAGVAMLVGLILGLIFYSRNREYKELSVVVENDDEEIIIETKHWLTLVAGI IALVIQLKTGSLPLGALAALIFMVVTRVVKWHEIQEILDGGVSLMGFIAFVMLIASGYAT VINSSGAVEQLVDAAFKFLGGSKIAGSFTMILLGLLITMGIGTSFGTVPVIAAIYVPLAQ KLGFSPAATVFMIAVAAALGDAGSPASDTTLGPTAGLNADGQHDHVWDTCVPQFLCYDIP LMIVGTIWPLFL >gi|289656131|gb|ADCS01000059.1| GENE 14 14419 - 16173 2088 584 aa, chain - ## HITS:1 COG:FN1401 KEGG:ns NR:ns ## COG: FN1401 COG2987 # Protein_GI_number: 19704733 # Func_class: E Amino acid transport and metabolism # Function: Urocanate hydratase # Organism: Fusobacterium nucleatum # 1 584 1 584 584 1135 91.0 0 MNGEYGLYYRENPEILYEVKAQGGGLKDTETLRCKGWRQETILRMLEFNMENAEIPELLV IYGGNGKCARNWESYWAIVDSLKNLEDDETLVVQSGMPVAIFKTHKEAPVVVMATTNIMK ATWERFYDLQDKNLTIFAQYTAAPWEYIGTQGVIEGTFETLSAIAMKKYNDDLTGKIYLT AGAGGMGANQTWAMKMHGGVCIVVDANEKILQKRIEKDYLDMIADSLEEAVEIAKEHAKN NDPISVGIVGNAADVYEKVLASDFRPDICSEMCPCHDPISYIPSGYTPEEADQLRIENRE KYLELARTTMKRQLAAMIALKEDGVEVFEYGTSIRKECMDAGFPREEALKIGGFVYEYIR PLFCEGRGPFRWTCLSRDPEDLKVSDDIALEICKGDNLVERWIKLARKNLPIEGMPARVC YMGFGERKRFGLAINQAIKEGRIKGTVAFSRDNLDSGSIVNPTFESEKMPDGGDYISDWP YLNALLDCAGGCDLIAIQQNYSMGEAVHTGVTMIADGTEEADRRLAVTLTTDSGIGVVRH AQAGYPAAKDVANGKGKYTTDSIKIPLWWQPADKVTFGPEGMYR >gi|289656131|gb|ADCS01000059.1| GENE 15 16402 - 17784 1788 460 aa, chain - ## HITS:1 COG:no KEGG:CTC02567 NR:ns ## KEGG: CTC02567 # Name: mutL # Def: glutamate mutase, MutL # Organism: C.tetani # Pathway: not_defined # 1 458 6 467 467 423 50.0 1e-117 MNCYMLVDFGSTYTKLSLVDIDNEKLIAKSSAHTTVNTNIKFGYEKALEKLKEEISFENI KIVDILGCSSAAGGLKMIAIGITPEFTVEAAKRAATGAGARLLKSYSYFLKEKDILEIDS LNPDIILLTGGAEGGNTKYILYNAKLLNNLKREIPIVVAGNSYANENIREIFNGGNIKYE ITENVMPDVNRINADPVREVIRKIFMKQIVTAKGMEDVEKITSEILMPTPTAVLKAAKLL SYGTEKYEGIGDVMVVDIGGATTDVHTISEPIKDKNFFIDGLEETCEKRTVEGDLGMRYS ALSLYESVGEENFLKYNSNIENIREKCEFRHNNPSILSDKESEIEFDEIMAKNCVEISVK RHSGKIRNSYIGGKNVIVQKGKDLREIKLVIGTGGILINSKKSAEILKQCKNKEKNYLLP IDPKFAIDKKYIMSAMGILSMRDENLAYKILTENIIDIND >gi|289656131|gb|ADCS01000059.1| GENE 16 17796 - 20846 2272 1016 aa, chain - ## HITS:1 COG:FN1400_2 KEGG:ns NR:ns ## COG: FN1400_2 COG3899 # Protein_GI_number: 19704732 # Func_class: R General function prediction only # Function: Predicted ATPase # Organism: Fusobacterium nucleatum # 248 1011 2 764 772 823 61.0 0 MTKISCRMFGVPSILEDGKDIFIPIGKLSGLVYYILIKKIVSRDEVAGLFWSSSNDERSK VSLRNALHKIRKLFKEEIILSPNKSTLMLNENIEFEIDVEKFSNNPIENLDLYTGEFMKG FYIKDSADFEYWIIEQRNYYKEQFISNIKKKIKNDFDTKNFKNFENEINSLLAVDNFNET AYMYLMKYYKLSGRYDKIINEYYNFQKLMEEELGIYPSDEIETLYNDAIENVNKSKGSNF RDKILEFYDRDYELKIMQENLDNFYNGREYKSILITGESGIGKTVLKKKLLSKNKGRFKI FESQCHVVEKDFLYSPWMKIISAIENELSKNHLKRPYIWDDVLKNLFFDGKSEYQPLSKI LENKENFNIDLIYSSIYSVLEILNTDKKILIIIEDIQWADNLSIKLLINFILRMNKNVLF ILTKSDESDEKVDRLLATLKDINKLLLIELKRFNRRDVSIIVRKSFENKEISEEDIDDIY EKSKGNSFFLREYIELYKKNEKENLIIPKMQNILQEKFSGLNEKEINILEILSVFYGDAT IDNLMKLLDLKAFDVVKSLNFLVKMNVIEEKKKNNEIVIGFVYSAYKEFIYNGLSDVSKK IIHGEIAKILEEELLNNIDITLYIKLKHHYSKANEDVKALKYEVYILNYYLNFSHELFPD LDDYDLSKQVKLFVKNDKALKWIHDVEKEILRVKNLRKNNFNFEEIRKIELLFLYCKGRY LIRGGNYFNGIKVMDRVIKLAIDLKDEKAELLGYKQMAIYGIQINDPNVMLKHIISGIKV ARKLKNNSDMGVLYRLYGVYYLMQGNFKSAENLFNKSIELFSNSGGIENSNSISIAADYN YIGEIRNSECNYDEAMQYFKKSIDLCEDTDASCLSIFYINAGKTCFLMNNIEDMKKYFML SKQIVDRFDSYWKNSVLDAFLALVLFLECDYISSIQYLKNAVAEVKTINNPRDIGIVYFV EAIMAFIIKKQNILELREIKEFLSETADVYYYNAIKYLDANRDRAEIEYLKQNIIC >gi|289656131|gb|ADCS01000059.1| GENE 17 20868 - 21842 1040 324 aa, chain - ## HITS:1 COG:no KEGG:FN1399 NR:ns ## KEGG: FN1399 # Name: not_defined # Def: putative cytoplasmic protein # Organism: F.nucleatum # Pathway: not_defined # 1 319 1 318 318 255 46.0 2e-66 MKNLQIYKKNNRIVLLDGTEAEVLFDLNKYNDVLENISNDKYKFFRIIHEEYKILDKKEI ESKFLYLFNFILVNNISNYIIDKYNEGENSEIIFEDSIKESGKQIIKLTGKLDTEDVLGD IITCLINSDAYLDGNLKMNYGKINVDADINTINRDMEFFFYYIAKESLDLRNKLLEDLIA FKYVKSSKKNDKDRFILPIYVDEEALKKKGVINYEDYLVNWISLAYLQMLYKIHDYFVDY YGLKFNKGLENDNLMLALIDLLDVEIEDYPKGLNKSIEVGRSTSGKCYFIDSIVTPMALS QDLALILQSKDAFSVVPKIFKSNR >gi|289656131|gb|ADCS01000059.1| GENE 18 22334 - 22738 288 134 aa, chain + ## HITS:1 COG:no KEGG:Ccel_3106 NR:ns ## KEGG: Ccel_3106 # Name: not_defined # Def: Zn-finger containing protein # Organism: C.cellulolyticum # Pathway: not_defined # 47 134 42 130 130 78 47.0 8e-14 MKEKFKNFIQGRYIAYYGVDALSKFLLLFIIISPILTNSRFKDFIYYFNFVLIAILYFRA FSKNISARYEENQKFLKLISPIRKSFSKISLIIKDRKHKYIKCSICKQELRVPRKKGKIK VKCKKCGNEFIIRT >gi|289656131|gb|ADCS01000059.1| GENE 19 22803 - 23324 874 173 aa, chain + ## HITS:1 COG:FN1483 KEGG:ns NR:ns ## COG: FN1483 COG0503 # Protein_GI_number: 19704815 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Fusobacterium nucleatum # 1 170 1 170 170 197 58.0 6e-51 MYLADKVRAIYDYPIDGIIFRDITTLLQDGDAFKAAIDNLISLHNNENIDIIVGVEARGF IVGAPVAYALGCGFVPVRKPGKLPSEKVSAEYSLEYGENKVEMHVDAIKKGQRVLIVDDL LATGGTSKAVIDLIEKLGGEVVALDFLIELVDLKGREKLKPYNVNSILQFEEK >gi|289656131|gb|ADCS01000059.1| GENE 20 23357 - 24400 1071 347 aa, chain - ## HITS:1 COG:SMa2355 KEGG:ns NR:ns ## COG: SMa2355 COG0389 # Protein_GI_number: 16263727 # Func_class: L Replication, recombination and repair # Function: Nucleotidyltransferase/DNA polymerase involved in DNA repair # Organism: Sinorhizobium meliloti # 5 339 29 368 379 234 39.0 2e-61 MKNSILHIDIDAFYASVEELDNPSLVGKPVVVSGLNDKSIVTTANYEARKYKIHSAMPLF MAKKLCPHLIVAPMRRNRYIEKSDEVFKILSKYSDIIEKVSIDECYMDISENKNQPVDIV FSIKKKVKNETGLTVSVGLSYNKFLAKMASDWNKPDGMMIISKSEIPQLLSKIDIGKIHG LGNKSQEKLRNLGINKIEELLELDREFLFELFGKMGYEVYDRIRGIDNRAVTPNRERKSL GIERTFSDTNNVKELISYLDRYSFELAEDLKNRNLGFKTITLKIKTDNFKVSTYSKTYSR AISEYEDIFKNVKDIFEYNYKNQKLRLIGISASNLIGLDKIQLSFIK >gi|289656131|gb|ADCS01000059.1| GENE 21 24498 - 25112 613 204 aa, chain + ## HITS:1 COG:CAC2227 KEGG:ns NR:ns ## COG: CAC2227 COG0560 # Protein_GI_number: 15895495 # Func_class: E Amino acid transport and metabolism # Function: Phosphoserine phosphatase # Organism: Clostridium acetobutylicum # 3 204 2 213 213 63 27.0 2e-10 MKKQILLFDFDKTLTRKDSILILWEYAVKIDKISKLYFYKNIISSMNSYLIIKDRITFKN KICSVLNYFNESELEKFAEYVYTNYMLTDGIKYFNSLDRDYAMLVSASPITYLKYFKKYL NFDIIIGTELDENFLLKGENNRFTEKVKRINRHLTDLGYEIDYDNSCAFSDSYSSDRPML EMVKNRYLINSNKKFNGYNNLTWK >gi|289656131|gb|ADCS01000059.1| GENE 22 25140 - 26930 2023 596 aa, chain - ## HITS:1 COG:no KEGG:Dd703_1351 NR:ns ## KEGG: Dd703_1351 # Name: not_defined # Def: thioredoxin domain protein # Organism: D.dadantii # Pathway: not_defined # 3 582 7 588 600 505 40.0 1e-141 MSYPTGTVIYLKDKCYSGYNIVSTIKSGVLIFDMNGNEIRRYKMNAMPAKLFKGGNVMGT SKFRSSDYSLQDGVSLIEIDYDGNKKWSYENFRFIEDGNPMWAARAHGDYQREGNPVGYF VPNMEAKSNGGNTIILGHDTIVSPAISDKKILDEVIYEVDYEGNVIWKFSFSENFESFGF SEQEKNVIYRNPNMKNISDGIGDYLHISSISVLGPNKWYDQGDIRFCPENIIFCSRQGNF IGIIDKKTKKVYWKIGPNVNDEIFRGLGGIIAPTHIQLIPKGLPGEGNILFFESGGTSGY GYPNLISPTGLKNAIRDYSRVIEFNPITWNIEWELNPAKLGFSNAINGYKFYSPYGSSVQ RLPNGNTLVTLGTSGTMLEITEEGEIVWKWICPYASNINAYAFTNFIYHGYRYPYDYLPE ENPVEIEMKPVNKSTFRLEGAGEFNKAKVIEVEGAEISNDIDLITMAMENDEEIAYQKKI ISMENSNIKSINSKNFDRRLEEKENAIVIFGAVRCIHCKALREIISELIESEFKNINCYY LDIDENKSMIRKHDIKSVPITMFFKNSQEVYRFIGESSYDEIAQAIEKYFKIKSKI >gi|289656131|gb|ADCS01000059.1| GENE 23 26927 - 27865 440 312 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 [Streptococcus pneumoniae SP6-BS73] # 2 306 1 303 306 174 35 8e-43 MVYDLIVVGGGPAGLSAAVYAGRSILNTLIIEKKFFGGRLKDTAEIVNYPSVISSSGIAL VEDFRKHASSYTTNNFIYGTVVDICKDEHEDVFEVKTLRKGTFKAKSVILALGTESRVLG IEGEERFQGQGVSYCATCDANFFSGKDVHILGSGDVALEEADYISKFANHVTIIVLHDDG IVDANETQKRIVFDNPKISFMWNSSLDKIIGEDCVNQIVVKNLKTGEKKTVLSDGVFLFV GLKPQTDIVNGLCKMNSDGFIIVDEKKETSVSGLFAAGDCTHTYLRQVVSAVSDGAVAAV AAERYIRRKEKI >gi|289656131|gb|ADCS01000059.1| GENE 24 27868 - 28656 838 262 aa, chain - ## HITS:1 COG:AF2269 KEGG:ns NR:ns ## COG: AF2269 COG0489 # Protein_GI_number: 11499850 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Archaeoglobus fulgidus # 21 255 16 252 254 224 46.0 2e-58 MIEIYGGNMTIQKYNVNNNSKVSKIIGVVSGKGGVGKSFVCANLATELSRRGYKVGILDA DITGPSVPKAFGISEKVTSDGENINPAITDGNIKIMSVNLILNNPGQPVLWRAPIVGSAI AQFFENVNWGELDYLFVDMPPGTGDVALTVFQSLPLDGVVIVTSPQDLVTMIVEKAVNMA RMMNIKILGLVENMSYFKCPHCDEVTYIYGESKVKQEAQKFGIEAIATLPINKDFASLVD EGKAELINVDELKSFVDTLEEK >gi|289656131|gb|ADCS01000059.1| GENE 25 28754 - 28891 253 45 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGHHLLERYRSGHNEAVLKTVWVHAHVGSNPTLSANLIKPIDESL >gi|289656131|gb|ADCS01000059.1| GENE 26 28837 - 29010 372 57 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTLAFRRFESCHPSHQKYDPLAQSAEHLTFNQGVARSNRAWVTICWRGIEVVITRRS >gi|289656131|gb|ADCS01000059.1| GENE 27 28966 - 29121 130 51 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MAGVAGLEPTKCQSQSLVPYRLGYTPKFGAPRRIRTPGTRIRSPLLYPTEL >gi|289656131|gb|ADCS01000059.1| GENE 28 29152 - 29322 306 56 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MVHLGGFEPPAHGLEVRCSIQLSYRCIYGAGEGNRTLATSLEGWGSTTELHPHILT >gi|289656131|gb|ADCS01000059.1| GENE 29 29451 - 29619 115 56 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNPQPTDYKSVALPIELHQHFFFPFSLATWIGLEPTTSSVTGWHSNQLNYQASLEL Prediction of potential genes in microbial genomes Time: Fri May 27 07:53:09 2011 Seq name: gi|289656130|gb|ADCS01000060.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.60, whole genome shotgun sequence Length of sequence - 5105 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 3, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + TRNA 17 - 93 85.0 # Asp GTC 0 0 + TRNA 115 - 190 92.8 # Thr TGT 0 0 + TRNA 202 - 287 69.6 # Tyr GTA 0 0 + TRNA 305 - 379 92.3 # Gly GCC 0 0 + TRNA 385 - 461 82.1 # Arg ACG 0 0 + Prom 724 - 783 10.2 1 1 Tu 1 . + CDS 836 - 3130 2804 ## COG2217 Cation transport ATPase + Term 3155 - 3192 3.1 - Term 3142 - 3180 -0.9 2 2 Tu 1 . - CDS 3205 - 4104 623 ## COG1242 Predicted Fe-S oxidoreductase - Prom 4215 - 4274 8.1 + Prom 4082 - 4141 7.9 3 3 Tu 1 . + CDS 4177 - 5085 961 ## COG0457 FOG: TPR repeat Predicted protein(s) >gi|289656130|gb|ADCS01000060.1| GENE 1 836 - 3130 2804 764 aa, chain + ## HITS:1 COG:CAC2241 KEGG:ns NR:ns ## COG: CAC2241 COG2217 # Protein_GI_number: 15895509 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Clostridium acetobutylicum # 76 763 11 697 699 587 46.0 1e-167 MKYKLKNLDCEVCSDDIRNHSHQIEGIDRVYNDNGEIVIESHEDISASEILNNISTHLKH IGHEHNMTICSEYIIYLRGLNCAHCTKKIEEATSVLGGVKSANYDFTNEKFNLLIEDSAD RDSIFNEVKVIVDRIEPEVVVEKADLKKSNTELKKISIFDYKMEFLKFAAILAALILTVI LKIPDVFKLVVYLLLYLYLGQEVIVSAAKNVIKGEVFDERFLMSVASIGAFVVGEYPEAV AVMLFYKVGQLFENIALENSRNSISKVLELKAEYANVLIGDIIKEVDPKDVNIGDIIFIR PGEKVPLDGVVIDGNSNLDTSNITGESIPRFVDSGDEVISGCINIDRPLKVEVQKNYENT TVAKILELVENSAVRKSKTEKIITKFAKVYTPIVVLLAVLITVILPLRGILSFYDAFFRA CIFLVISCPCAFVISVPLGVFAGIGSASKNGIFVKGGNYLEALSDVSNIVFDKTGTITKG IFEISDIKPVGEFSDKEILKYAVTAERTSTHPIATAILKRDNSYFEDAEDFNEYLGKGIV YTLNGDKIFVGNGKLLKENNIEFETLHESGVVVYVAKAGSCIGSIVISDSVKDEAWKEIR KLKKLGMHLTILSGDNEENTKLTSNSIGINDCYGDLLPNEKVEKLEEIMKKATNKVLFVG DGVNDAPVLSRADIGVAMGTIGSDSAIDAADIVIMNDELSKIATAIKISNKTKKIIYQNI FFALFVKILVLILGALGLTTMWVAVFADVGVTVIAVLNSIRALN >gi|289656130|gb|ADCS01000060.1| GENE 2 3205 - 4104 623 299 aa, chain - ## HITS:1 COG:CAC3238 KEGG:ns NR:ns ## COG: CAC3238 COG1242 # Protein_GI_number: 15896484 # Func_class: R General function prediction only # Function: Predicted Fe-S oxidoreductase # Organism: Clostridium acetobutylicum # 4 295 21 312 324 284 45.0 2e-76 MRRFLSFNDYFKEKFNTKIAKLSLDIGSTCPNRDGTLSYRGCIFCSERGSGDFAGDRLLS IDNQINQQKYLLSKKWNATKFIAYFQNFTNTYGNIESLEKIYTYVIKRDDIIGLSIATRA DCLGDDVMEMLKRLNEKTFLWLEIGMQTINENTINIINRGYSHKIFDENVKKLKNNNIKF LTHIIFGLPYETKEDMLNTVKYVKALHPFGIKFHSLYIQNYSDLYNYYLENKFDIISKDD YINLVCDSIEILPKDIVIHRLTGDADKKKLIEPKWCADKLSVISSIDKELKNRNLPIII >gi|289656130|gb|ADCS01000060.1| GENE 3 4177 - 5085 961 302 aa, chain + ## HITS:1 COG:CAC3449 KEGG:ns NR:ns ## COG: CAC3449 COG0457 # Protein_GI_number: 15896690 # Func_class: R General function prediction only # Function: FOG: TPR repeat # Organism: Clostridium acetobutylicum # 8 298 4 291 305 122 32.0 1e-27 MTVYLNFNEKYNNYIIIANDFVSKDDLKSALNAYNKALEFATTPDKKIDVLFEISDIYLI FEEYLSAKICFEKIIEIDSTRSGAYYGVALTNDFLNGSVEESIKYYKFAIEYDDNYDRAY YYLGHCYDKTGDKNAALRCFKKCIDIDSEDYISYNDIGCIYEEQKCYDMAKHYFECSLKI NPNYFRALYNMGVVYKALGDNNVALEYYFKAKNEEKNPYIYLNISAIYIELKDFNRAIEI LNEGIEYNPESVNLFYNRACSKARLGDKEGALLDLKRAVNINKEAYNWAVNDLDLTEVIK EM Prediction of potential genes in microbial genomes Time: Fri May 27 07:53:27 2011 Seq name: gi|289656129|gb|ADCS01000061.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.61, whole genome shotgun sequence Length of sequence - 58317 bp Number of predicted genes - 60, with homology - 57 Number of transcription units - 24, operones - 14 average op.length - 3.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 3 - 281 281 ## gi|299144475|ref|ZP_07037554.1| tetratricopeptide repeat protein 2 1 Op 2 . + CDS 284 - 1039 1156 ## COG0024 Methionine aminopeptidase 3 1 Op 3 . + CDS 1064 - 2122 973 ## COG0534 Na+-driven multidrug efflux pump 4 1 Op 4 . + CDS 2113 - 2448 434 ## Apre_0100 MATE efflux family protein 5 1 Op 5 . + CDS 2459 - 3058 969 ## COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family + Term 3060 - 3091 1.1 + Prom 3073 - 3132 14.4 6 2 Tu 1 . + CDS 3153 - 4664 1994 ## COG1288 Predicted membrane protein + Term 4673 - 4710 4.6 + Prom 4748 - 4807 8.0 7 3 Op 1 . + CDS 4831 - 6024 1181 ## Bsph_3108 hypothetical protein 8 3 Op 2 . + CDS 6035 - 7357 1396 ## COG4260 Putative virion core protein (lumpy skin disease virus) + Term 7433 - 7476 6.5 + Prom 7381 - 7440 9.1 9 4 Tu 1 . + CDS 7618 - 8097 679 ## COG3760 Uncharacterized conserved protein + Prom 8110 - 8169 7.5 10 5 Op 1 2/0.333 + CDS 8315 - 10456 3051 ## COG1960 Acyl-CoA dehydrogenases 11 5 Op 2 . + CDS 10471 - 11709 1326 ## COG0426 Uncharacterized flavoproteins + Term 11720 - 11765 10.0 + Prom 11785 - 11844 7.6 12 6 Tu 1 . + CDS 11918 - 13306 1695 ## COG1362 Aspartyl aminopeptidase + Term 13343 - 13397 15.2 - Term 13331 - 13383 9.5 13 7 Tu 1 . - CDS 13386 - 13664 352 ## gi|299144485|ref|ZP_07037564.1| hypothetical protein HMPREF0629_01371 - Prom 13699 - 13758 9.2 - Term 13709 - 13773 11.8 14 8 Tu 1 . - CDS 13781 - 14377 648 ## PROTEIN SUPPORTED gi|227901806|ref|ZP_04019611.1| ribosomal protein S4 - Prom 14428 - 14487 12.4 + Prom 14443 - 14502 9.0 15 9 Op 1 . + CDS 14528 - 15805 1336 ## COG0402 Cytosine deaminase and related metal-dependent hydrolases 16 9 Op 2 . + CDS 15815 - 16804 1213 ## COG0180 Tryptophanyl-tRNA synthetase 17 9 Op 3 . + CDS 16810 - 18597 1797 ## COG1164 Oligoendopeptidase F + Term 18827 - 18863 6.5 + Prom 18671 - 18730 5.3 18 10 Op 1 8/0.000 + CDS 18876 - 21527 2905 ## COG0525 Valyl-tRNA synthetase 19 10 Op 2 . + CDS 21527 - 22834 1263 ## COG0285 Folylpolyglutamate synthase 20 11 Tu 1 . - CDS 22871 - 23386 457 ## Thit_0749 hypothetical protein - Prom 23407 - 23466 9.1 21 12 Op 1 . + CDS 23699 - 23845 195 ## 22 12 Op 2 . + CDS 23835 - 24356 812 ## COG0634 Hypoxanthine-guanine phosphoribosyltransferase 23 12 Op 3 . + CDS 24359 - 25282 650 ## COG1266 Predicted metal-dependent membrane protease 24 12 Op 4 . + CDS 25295 - 26032 825 ## COG0846 NAD-dependent protein deacetylases, SIR2 family 25 12 Op 5 1/0.333 + CDS 26029 - 26751 697 ## COG0500 SAM-dependent methyltransferases 26 12 Op 6 . + CDS 26755 - 27633 887 ## COG1281 Disulfide bond chaperones of the HSP33 family 27 12 Op 7 . + CDS 27657 - 28139 379 ## gi|299144498|ref|ZP_07037577.1| conserved hypothetical protein + Term 28168 - 28229 1.2 + TRNA 28619 - 28694 89.7 # Phe GAA 0 0 + TRNA 28698 - 28772 92.3 # Gly GCC 0 0 + Prom 28700 - 28759 78.7 28 13 Tu 1 . + CDS 28822 - 29340 611 ## COG4720 Predicted membrane protein + Term 29348 - 29403 10.6 - Term 29476 - 29506 1.2 29 14 Tu 1 . - CDS 29545 - 29736 237 ## PROTEIN SUPPORTED gi|169824369|ref|YP_001691980.1| 50S ribosomal protein L28 - Prom 29764 - 29823 9.3 + Prom 29800 - 29859 9.4 30 15 Op 1 9/0.000 + CDS 29885 - 30238 636 ## COG1302 Uncharacterized protein conserved in bacteria 31 15 Op 2 4/0.333 + CDS 30251 - 31927 1895 ## COG1461 Predicted kinase related to dihydroxyacetone kinase + Term 31929 - 31963 1.8 32 15 Op 3 1/0.333 + CDS 31970 - 34012 2217 ## COG1200 RecG-like helicase 33 15 Op 4 14/0.000 + CDS 34066 - 34611 269 ## PROTEIN SUPPORTED gi|163764797|ref|ZP_02171850.1| ribosomal protein L29 34 15 Op 5 3/0.333 + CDS 34608 - 35087 341 ## PROTEIN SUPPORTED gi|163764798|ref|ZP_02171851.1| ribosomal protein S19 35 15 Op 6 . + CDS 35092 - 35532 709 ## COG3599 Cell division initiation protein + Term 35534 - 35579 7.7 + Prom 35613 - 35672 4.7 36 16 Tu 1 . + CDS 35715 - 36251 640 ## gi|299144507|ref|ZP_07037586.1| ferrichrome ABC transporter (binding protein)- like protein + Term 36328 - 36362 3.6 - Term 36309 - 36357 3.3 37 17 Op 1 . - CDS 36358 - 36495 101 ## 38 17 Op 2 23/0.000 - CDS 36517 - 37116 756 ## COG0353 Recombinational DNA repair protein (RecF pathway) 39 17 Op 3 30/0.000 - CDS 37118 - 37456 181 ## PROTEIN SUPPORTED gi|149916415|ref|ZP_01904934.1| 30S ribosomal protein S21 40 17 Op 4 . - CDS 37467 - 39113 1698 ## COG2812 DNA polymerase III, gamma/tau subunits - Prom 39147 - 39206 6.7 + Prom 39001 - 39060 3.8 41 18 Tu 1 . + CDS 39282 - 39536 385 ## gi|299144511|ref|ZP_07037590.1| ferrichrome-binding periplasmic protein + Term 39546 - 39591 6.2 + Prom 39543 - 39602 7.2 42 19 Op 1 . + CDS 39628 - 40827 1452 ## COG2843 Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) 43 19 Op 2 . + CDS 40820 - 41836 1191 ## COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D + Prom 41841 - 41900 8.2 44 20 Op 1 5/0.333 + CDS 41929 - 42384 259 ## PROTEIN SUPPORTED gi|163764774|ref|ZP_02171828.1| ribosomal protein L14 45 20 Op 2 7/0.000 + CDS 42394 - 42909 220 ## PROTEIN SUPPORTED gi|163764773|ref|ZP_02171827.1| ribosomal protein L24 46 20 Op 3 5/0.333 + CDS 42881 - 43864 329 ## PROTEIN SUPPORTED gi|163764772|ref|ZP_02171826.1| ribosomal protein L5 47 20 Op 4 6/0.000 + CDS 43864 - 46302 2090 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 48 20 Op 5 . + CDS 46274 - 47638 1342 ## COG1066 Predicted ATP-dependent serine protease + Term 47641 - 47675 1.7 + Prom 47653 - 47712 12.8 49 21 Op 1 . + CDS 47732 - 48316 733 ## COG1435 Thymidine kinase 50 21 Op 2 8/0.000 + CDS 48359 - 49444 1434 ## COG0524 Sugar kinases, ribokinase family 51 21 Op 3 . + CDS 49434 - 50360 1173 ## COG2313 Uncharacterized enzyme involved in pigment biosynthesis 52 21 Op 4 . + CDS 50338 - 50859 723 ## COG1607 Acyl-CoA hydrolase + Term 50869 - 50903 2.1 + Prom 50908 - 50967 13.4 53 22 Op 1 . + CDS 51025 - 52533 1618 ## CHU_0938 hypothetical protein (EC:3.2.1.-) + Term 52544 - 52581 4.4 54 22 Op 2 . + CDS 52592 - 52690 76 ## + Prom 52712 - 52771 4.1 55 23 Op 1 . + CDS 52797 - 53078 261 ## COG1550 Uncharacterized protein conserved in bacteria 56 23 Op 2 . + CDS 53085 - 53729 626 ## COG0177 Predicted EndoIII-related endonuclease 57 23 Op 3 . + CDS 53733 - 55148 1154 ## COG2720 Uncharacterized vancomycin resistance protein + Term 55159 - 55211 1.2 + Prom 55174 - 55233 8.2 58 24 Op 1 . + CDS 55374 - 57536 1885 ## COG0550 Topoisomerase IA 59 24 Op 2 . + CDS 57536 - 58084 456 ## gi|299144528|ref|ZP_07037607.1| hypothetical protein HMPREF0629_01414 60 24 Op 3 . + CDS 58081 - 58315 254 ## gi|299144529|ref|ZP_07037608.1| S1 RNA binding domain protein Predicted protein(s) >gi|289656129|gb|ADCS01000061.1| GENE 1 3 - 281 281 92 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299144475|ref|ZP_07037554.1| ## NR: gi|299144475|ref|ZP_07037554.1| tetratricopeptide repeat protein [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 92 211 302 302 164 100.0 1e-39 AKNEEKNPYIYLNISAIYIELKDFNRAIEILNEGIEYNPESVNLFYNRACSKARLGDKEG ALLDLKRAVNINKEAYNWAVNDLDLTEVIKEM >gi|289656129|gb|ADCS01000061.1| GENE 2 284 - 1039 1156 251 aa, chain + ## HITS:1 COG:lin1821 KEGG:ns NR:ns ## COG: lin1821 COG0024 # Protein_GI_number: 16800888 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionine aminopeptidase # Organism: Listeria innocua # 1 250 1 250 252 324 60.0 1e-88 MVIIKTEEEIQKMIIAGKLLSQVHHELRNRVKPGVKTIELDRFVEEFLKDRGAYPEQKGY EGFPYSICASVNDEICHGFPGEYVLKDGDIITIDMVVNVDGYLADSAWSYEVGTVSEEAH NLLEVTRKCMYLGIEQAKIGNRLGDIGHAIQTYAESNGYSVVREFVGHGIGKEMHEDPQV LHYGKPGRGLRIREGMVFTIEPMINAGGPDLIIDDDGWTARTKDGSLSAQYEHQIAITKD GPIIITDQGDC >gi|289656129|gb|ADCS01000061.1| GENE 3 1064 - 2122 973 352 aa, chain + ## HITS:1 COG:BH0886 KEGG:ns NR:ns ## COG: BH0886 COG0534 # Protein_GI_number: 15613449 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Bacillus halodurans # 2 345 3 341 454 117 27.0 5e-26 MSKDVDLLNGSITNLIIRLSLPLMGTAFIQMAYSLVDLIWVGKLSTEAVAAVGCCGFFIW IAQSLILISRTGLSVGMSQAYGKRDNRALVEVARSGFQVNFLIWTALTFIYTVFRDDILG FYRLDYEVEILAVKYFNIITFGLIFTFWVSAIESVYYARGNSTTPFKVSTVALIFNIIAD PILIFGLGPFPNLGIEGAAIATVLAQAIAFFIFIYLGIKDREIYVRINYLKKVNINRIIY IFKLGVPASLQSIIHALVGIRLNRFIADFGAASIAAFAIGAQIESVSWMSAEGFSTAFSS IFGQNYGAKNFERILECRKKGLKILTTVGVLAASLLFLQESRFLKYSLMIWM >gi|289656129|gb|ADCS01000061.1| GENE 4 2113 - 2448 434 111 aa, chain + ## HITS:1 COG:no KEGG:Apre_0100 NR:ns ## KEGG: Apre_0100 # Name: not_defined # Def: MATE efflux family protein # Organism: A.prevotii # Pathway: not_defined # 2 84 353 435 454 71 43.0 7e-12 MDVIKIGSSYLMINAISEIFMVYEIGTTGMLNGLGLTKYPAINAVIFNVFRIPMAIFLIP IFGVDGIWAAISISSVIKGIVIIICYKYISDKTSGFRENMNMYVSKMDEII >gi|289656129|gb|ADCS01000061.1| GENE 5 2459 - 3058 969 199 aa, chain + ## HITS:1 COG:lin2475 KEGG:ns NR:ns ## COG: lin2475 COG0652 # Protein_GI_number: 16801537 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family # Organism: Listeria innocua # 6 197 8 194 194 219 60.0 2e-57 MLNQLKEPVKGEEVAVIKTNHGVIKIRLFEEAAPKAVENFKELIKKGYYDNTIFHRVIDN FMIQGGDPTGTGMGGESIWGKSFEDEFNLNYRNFRGALSMANAGPNTNGSQFFIVQMGPV EEDIIRQMRSAGEEKGYPDEVVDVYENLGGTYWLDGKHSVFGQVFDGMDVVDEIASVSVG FRDKPVEDVVIEKASIEVF >gi|289656129|gb|ADCS01000061.1| GENE 6 3153 - 4664 1994 503 aa, chain + ## HITS:1 COG:FN0023 KEGG:ns NR:ns ## COG: FN0023 COG1288 # Protein_GI_number: 19703375 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Fusobacterium nucleatum # 5 503 2 499 499 592 63.0 1e-169 MDKKKEIKMPDTFIIIFFVVLFAALLTYVVPKGHFETEEITYTVDGKDKTRTVIKNGTFE YVTDDAGSPVKEGVKVFASDEDGGSGFLNYMFEGLVTGDKYGSAVGVVAFILVIGGAFGI VLSTGAIEGGIMRMIDKLNGKEVILLPVLFLLFSLGGAVFGMGEEAIPFVMIVVPMVIAM GYDAVVGIIITYVATQIGFATSWMNPFSVAVAQGISGIPVLSGANFRIAMWCIFNFIVIV YTMIYAKKIRKDPRRSVSYESDAYFREDFEKSKNTSMEFNLGHKLIILDLVLTMVWVVWG VTKKGYYIPEIATQFFTMGIVAGIIGIIFKLNNMSLNNMAVSFRNGAKDLLGPAMVVGMA QGIIFVLGGTDPTNGTVLNTILNTAASGISKLSPTISAWIMYVFQSVFNFFVVSGSGQAS LTMPLMAPLADLAGVTRQVAVLAFQLGDGLTNLIVPTSGLLMAVLGAARLEWGKWAKFQI KMQALLFVVATVFVVAAVAMGFA >gi|289656129|gb|ADCS01000061.1| GENE 7 4831 - 6024 1181 397 aa, chain + ## HITS:1 COG:no KEGG:Bsph_3108 NR:ns ## KEGG: Bsph_3108 # Name: not_defined # Def: hypothetical protein # Organism: L.sphaericus # Pathway: not_defined # 18 374 4 363 367 348 45.0 2e-94 MKEENYNGAEDRNKSFDEQINRVDTMKETDKKCPSCGGVMDFNPNTGGLKCPYCGAEEQI EVENTDFVAVELDFDSAEENALCDWGTKTKTVICKSCGAETIYDVNQISNECPYCGSNQV MNEKDKDIMAPGGVVVFKLDSKMAGGKFKDWIKKKLFCPNLAKESAKPTAFKGVYVPYWT FDADTYSRYSGQYGIDRHYKDSEGKDHIEVIWHSTRGDFSYSVDDMLCCGSSIQNEKMLS GIEPFDTTQVVEYKPEYMAGFMAERYTVKMKSAWEIVKRKISGIISGKIDNKILRENNAQ HTKNVDIDTEFSNITYKYILLPIWISSFKYKNKVYQFVVNGQTGKVSGESPISIPKVLLA IIIASAVIFAIYYLNKDSSNSAAIVNNVYSIIGKYIM >gi|289656129|gb|ADCS01000061.1| GENE 8 6035 - 7357 1396 440 aa, chain + ## HITS:1 COG:BH1805 KEGG:ns NR:ns ## COG: BH1805 COG4260 # Protein_GI_number: 15614368 # Func_class: S Function unknown # Function: Putative virion core protein (lumpy skin disease virus) # Organism: Bacillus halodurans # 1 435 1 432 433 244 34.0 3e-64 MGLLKVGLGAASSVLADQWREYFYCSEMPEDVLVRKGEKRKAKKSFNDKGSDNIITNGSI IAINEGQCMIIVDQGAIAEVSAEAGEFVFDNSTEPSIFYGDLKEEVKKTFDTFVKRFTMG GDTGKDQRVYFFNLKDIIGNKYGTVNAVPFRVVDTNIGLDIDISIRCHGEYVYKITDPIL FYKNICGNVDDEFYRDRIESQLRSELLTALQPAFARISEMGIRYSALPGHAQDLSNILND ILSDKWGKHYGIEITEFGVSSVKASEEDENMIKEIQRNAAFRNPTMAAAHLVGSQAEAMK SAASNESGAFMAFAGMNMANSAGGMNAQGLFNMGQEQAQTQQVASQTTEIPVGWTCSCGT SGNTGKFCMECGSQKPEELFWTCECGVKNKGKFCMECGSPKPTGALQYKCDKCGWEPSDP KNPPKFCPECGDPFDDGDVK >gi|289656129|gb|ADCS01000061.1| GENE 9 7618 - 8097 679 159 aa, chain + ## HITS:1 COG:PA1841 KEGG:ns NR:ns ## COG: PA1841 COG3760 # Protein_GI_number: 15597038 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Pseudomonas aeruginosa # 38 146 45 153 165 101 44.0 6e-22 MNEKTAYELLDKYNISYVRFDHEPIETLIGNLNLVEGQQVKNLVLKNKKAKNIYFIIIEE SKELNISELGEKIGEKRLSFASLENLDEYLKCKVSAVTPLGLFYDENKKVKVLIDDSLDI NTTLGIHPFINTTTLNIEFKDLLRFFDELEVEYEFINMD >gi|289656129|gb|ADCS01000061.1| GENE 10 8315 - 10456 3051 713 aa, chain + ## HITS:1 COG:FN1424_1 KEGG:ns NR:ns ## COG: FN1424_1 COG1960 # Protein_GI_number: 19704756 # Func_class: I Lipid transport and metabolism # Function: Acyl-CoA dehydrogenases # Organism: Fusobacterium nucleatum # 69 445 1 377 377 593 80.0 1e-169 MSFFKKKKGNKTESYTKNSSKNSKHSTENAEEKLEVLTEETCKDMTDKNLKEKDEIIESK EDLKGGKHMLFKTNQEHEELRKAVREFAEAEIKPIAFSLDQNNEFPDEIVKKIGENGWMG LPYSKEYGGAGKDVISYAIAVEELSRVDGGVGVILSAHTSLGTYPIEAFGTEEQKQKYLV PLASGEKIGAFGLTEPEAGSDAGGTETTAELDGDYYILNGGKIFITNAPKADFYVVFAVT TPGIGTHGISAFIVEKGWEGFSFGDHYDKLGIRSSSTAELIFNNVKVPKENLLGKEGQGF RIAMQTLDGGRIGIASQALGIAQGAYEAALKYAKERIQFGRPIAQQQIISFKLADMATKL RAARFLVYSAAEMKHNHENYGMESAMAKQYASDVALEIVNDALQIHGGNGYLKGMDVERF YRDAKITTIYEGTNEIQRVVIASHIIGKLPKRGGSSPVAAAMKKAGPITGERKREIIKAD TAKEAVDELVKNLKKDGYDFSVGIDINTPISDAERVVSVGKGIGAAENMEHAKKLAHAAG AALGSSRPVAETLKYVPLERYVGMSGQKFKGNLYIALGISGASQHLKGIKDASTIVAINK NGSAPIFKNCDYGIVGDMNEIMPLLAEALGTEEKKPAPPMKKVRRSKPRKLAPTYGVYVC PGCGYEYDPNIGDPEGEIDAGTTFDKLPDDWTCPQCQEEKQTFIQENYPEDRK >gi|289656129|gb|ADCS01000061.1| GENE 11 10471 - 11709 1326 412 aa, chain + ## HITS:1 COG:FN1423 KEGG:ns NR:ns ## COG: FN1423 COG0426 # Protein_GI_number: 19704755 # Func_class: C Energy production and conversion # Function: Uncharacterized flavoproteins # Organism: Fusobacterium nucleatum # 1 402 1 405 405 575 65.0 1e-164 MHTIRKVVDDLYWVGGNDHRLELFENIFPIPKGVSYNSYLLLDEKTVLVDSVDWSITREY LRNVEYVLDGRDLDYLLIHHMEPDHCGAIEEICLRYPNVKIISSAQGFDIMRQIGYRIKD EQIVIVKEGDTMNFGKHTLAFVEAPMVHWPEVILSFDVTNGVLFSADAFGSFGAIDGKLF NDEVNFDRDWLDEARRYYTNIVGKYGPFVQDVLKKAATLDIKYICPLHGLVWRSDFGYLL EKYDKWSKYEPEETGVMIAYASMYGNTEYAAQALATELCEKGMTNVVIHDVSNTHVSELI SDTFKYSHIVLASVTYNLGIYPVMKNFIHDMEALNVQNRTVGIIENGTWACTVGDKMEEF LNDNLKLIDVLNDRVTINTSLNVANESDMHSLADSIIESMEKIKEIKALANK >gi|289656129|gb|ADCS01000061.1| GENE 12 11918 - 13306 1695 462 aa, chain + ## HITS:1 COG:CAC1091 KEGG:ns NR:ns ## COG: CAC1091 COG1362 # Protein_GI_number: 15894376 # Func_class: E Amino acid transport and metabolism # Function: Aspartyl aminopeptidase # Organism: Clostridium acetobutylicum # 11 461 10 463 465 488 51.0 1e-138 MNFEELELNSKSIWQLVGEEEHREIYAYGDRYKNFLDNAKTEREACKFIIAEAVKNGFVS FEEAIKGKIKQGDKIYLNNKNKSAVLFVMGEDLTEGMRIVGSHIDCPRLDIKQRPLYEDL EMAFLKTHYYGGIKKYQWPTIPLALHGYVVNSNGESFDIRIGENEDDPVFYINDLLPHLG ADQNKKVLGEAIPGESLNIVVGHSSYGIKEDKNPIKKAVLKYLNENYGIVEEDFMVAEFE VVPATKARDVGFDRAMIAAHGHDDRICSYANLEAILKTENPKITAVGLFVDKEEIGSVGN SSMSAKFFENAVAEILATGENYSDILVRRAMANSKVLSADVTAALDPDFKEVMDSKNAAV VGYGIAMSKYTGARGKSGCNDANSEFLVELRDIFKRDNVIWQTGELGKVDQGGGGTIAYI LAEYGAEVVDMGTAMLSMHAPVELASKADAYMTFKAYKSFLK >gi|289656129|gb|ADCS01000061.1| GENE 13 13386 - 13664 352 92 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|299144485|ref|ZP_07037564.1| ## NR: gi|299144485|ref|ZP_07037564.1| hypothetical protein HMPREF0629_01371 [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 92 1 92 92 166 100.0 3e-40 MKENNNEPNFVKLVTVFDQFKVGAIKGLLEDSNIPYIEEASHDKDSYMIIFSGWNMLGTN IYVPDYNLEEAQNLVTMIFGDDFNKNDLSEKR >gi|289656129|gb|ADCS01000061.1| GENE 14 13781 - 14377 648 198 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227901806|ref|ZP_04019611.1| ribosomal protein S4 [Finegoldia magna ATCC 53516] # 1 196 1 198 198 254 66 1e-66 MAKMMVPRFKQSRRLGLNVCGHPKAMKRATKGTARSDKKLTEYGKQLLEKQRLRAYYGVL EKQFVNLFKEAKKSKEQTGPALVQFLERRLDNLAYRMGFASSIRQARQMVTHGHITVNGK KVNIPSYRCSAGDVIALSARGRKAELFKTNYETNYVTSYPYIKKEEDFKATLVSLPNRED IPVEIDDQLIVEFYSKNM >gi|289656129|gb|ADCS01000061.1| GENE 15 14528 - 15805 1336 425 aa, chain + ## HITS:1 COG:MJ1541 KEGG:ns NR:ns ## COG: MJ1541 COG0402 # Protein_GI_number: 15669736 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Methanococcus jannaschii # 23 422 15 418 420 308 42.0 1e-83 MSILLKNTSYLDIRNEKIIENVDIYIENNLIKKIGTDLSFSNCEIINCENKLAVPAYTNS HSHLGMSMLRNYGDDLDLNTWLTKKIWPVEDKMTPDDIYWSSMLSIVENIKSGVSTVCDM YYSLDRVSEGIIDSGIRGVLTRGLMDITGGGDSRLEELKELYSNYNNAGNGRVKILPGPH AIYTCSKEYLKKILKLTQKFDGVLNIHLSETEKEVRDCLNIHGTTPAKYLESIGFFDVKV IAAHCTHLSYDEIEMISKYAVYPIYNPSSNLKLASGFAPIQKMIDNNLIVGIGTDGSSSN NNQDIIEEMHLASLVNKAVNRDAVSVKAIDVIKMATINGAQIMGYNGGLIDEGYLADITL FNLESLGFTPKNNLISALCYSANSHYVSDLIVDGKIIMQDRNILTIDEEKIKYMVSKLAE KLFKR >gi|289656129|gb|ADCS01000061.1| GENE 16 15815 - 16804 1213 329 aa, chain + ## HITS:1 COG:CAC0626 KEGG:ns NR:ns ## COG: CAC0626 COG0180 # Protein_GI_number: 15893914 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Tryptophanyl-tRNA synthetase # Organism: Clostridium acetobutylicum # 2 327 12 339 343 392 58.0 1e-109 MDKKIVYSAIQPSGSLTIGNYIGALSNFGNLQEEYDCIYCIADMHAITMPQEPKDLRKNT LDVISLYLAAGLDPEKSILYIQSHVPQHTELGWVLNTISSLGQLQRMTQFKDKSQKSKEI LAGILNYPVLMAADILLYQTSYVPVGEDQRQHIELTRDLAQKFNSRYSDTFTIPEMMTPK VGARIMSLQNPESKMSKSDSDVNSYILILDSEDDTRRKIKRAVTDSVGEIKYNDEQPGLK NLINIYSSFSGKSTDEIVEYYKNSNYGIFKEDLAEVVVEGLRPIRTKFKEIREDKEYLEK IYRDGAEKASYLANKTLRKVYKKVGFIGR >gi|289656129|gb|ADCS01000061.1| GENE 17 16810 - 18597 1797 595 aa, chain + ## HITS:1 COG:SA1216 KEGG:ns NR:ns ## COG: SA1216 COG1164 # Protein_GI_number: 15926964 # Func_class: E Amino acid transport and metabolism # Function: Oligoendopeptidase F # Organism: Staphylococcus aureus N315 # 2 594 3 595 604 502 44.0 1e-142 MEALKNRSEIDESLKWDLSRIFKSEDEYNTKLNEMIKLSDELVKFKGNIKNSEDLLNSIK IYEKIMEAQNLTSNYASLSYSVDLTDEESRIRIQKFDNIENNLMEKISFYENEILSLDVE IIEETINSSDKYKMYLKTILKNKEHILSEKEEKVIATLAPSIAGPYKTYEDSKASDMTFD DFVVGDKTYANSFVLYENFYCYDTNEEVRRKAYESFSKGLDRYKNTFASVYINHVTNEKQ IATLRGFDSVIDYLLFNQGVDRKLYDRQIDLMTEKLAPHMRKYAKLIKKFYNIDKMTFAD LKVPIDAEFVPKITIEESKDYVKDALSVMGEEYLDVAMSSYSNRWIDFANNIGKSTGGFC ASPYKCDSFILLSFTEQLNEVYTLVHEIGHGVHFHNAQANNSVLEEEPSLYFIESPSTIN ELLLSNSLLKKATDDRFKRFVYAAQIGNTYYHNCVTHLLEAAYQREVYRLVDAGEPLTEK TLTKITKEVHEKFWADAVEIDDYAALTWMRQPHYYMGLYSYTYSAGLSIATEVAKRIMKD GKVAADAWIDALCKGGSLEIIDLCKVAGVDITKEDFILNTIDYIGDIIDKIEELM >gi|289656129|gb|ADCS01000061.1| GENE 18 18876 - 21527 2905 883 aa, chain + ## HITS:1 COG:CAC2399 KEGG:ns NR:ns ## COG: CAC2399 COG0525 # Protein_GI_number: 15895665 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Valyl-tRNA synthetase # Organism: Clostridium acetobutylicum # 3 880 6 881 881 1051 56.0 0 MREISKTYNPKEFEERLYKYWMDNNYFRAEVDSSKKPFTIVMPPPNVTGNLHMGHALNNT IQDILIRTKRMQGYSALWLPGTDHASISTEAKVVEKIKSDGKSKDELGREKFLEEAWKWT DKYGGNIKNQLKKLGVSCDWSRERFTLDDMLSHAVEEVFIRLYEKGLIYRGDRIINWCPN CRTAISDAEVEHEESDGHIWHFRYPLEDGNGYIEVATTRPETIPGDLAVAVNPKDERYAD LVGKYVLLPIMNNRRIPIVADEYVEMEFGTGAVKITPSHDPNDFEVGERHNLGQFKVFTD DGHLNENAGKYNGMDRYAARKQIIEDFKALNLFAGEEHHHNAVGHCERCKTIIEPMISKQ WFVKMEPLAKPALQAYYDGKLNFVPERFAKVYVNWLENIKDWCISRQLWWGHRLPVFYCV ETGEVVVSRTDPTGSPGYENKTFKQDEDTLDTWFSSALWPFSTLGWPEQTEDLKYFYPTD VLVTGYDIIFFWVIRMVFSALEDMGEVPFKDVFFTGLVRDSQGRKMSKSLGNGIDPLEII DNYGADALRFTLISGNTPGNDMRFYNERVEANRNFANKLWNATRFVLMNLDDEKSEYKLN IDSLKNEDKWILSKLQNLIADVTIKLDKYDMGLAAQEIYDFIWSDYCDWYIEMVKPRLYG EDNKYKESAKAVLLYVLKDILKLLHPFMPYITEEIWQHLPGTETALIVSKWPKEVSDYEF KEEGKAIEYIKEAIRGIRNARAEMNIENSKKSSTIIVTTSDEIKNIVEENKNQLLNLGYS TDVVIISDKSKVSGDNISIVLDGAEIFLPLKDLVDYKKEFERLSKDREQTISEIERATKK LSNESFIAKAPEKVVAEEREKKEKYEKMLKTIEERLESVRENL >gi|289656129|gb|ADCS01000061.1| GENE 19 21527 - 22834 1263 435 aa, chain + ## HITS:1 COG:CAC2398 KEGG:ns NR:ns ## COG: CAC2398 COG0285 # Protein_GI_number: 15895664 # Func_class: H Coenzyme transport and metabolism # Function: Folylpolyglutamate synthase # Organism: Clostridium acetobutylicum # 22 429 22 430 431 254 40.0 2e-67 MKFSDVILNIESREGKRKSYDFSRMRALLKVLNNPHDGLKYLHVAGTNGKGSTSNFLYNI LISEGYIVGLYTSPHLERYNERIMINGNEISDEDFTRLGKIVIDAEKQILDEFEVMTYFE FITAMAFLYFREKNCDYCVLEVGMGGLSDSTNVVAPKDKLMSFITPISMDHMQYLGNTVE EIAEQKAGIIVKNVDVVSSNKNKSVVEILKNKAERENAQYYDLDDVKIENLIIDDRGSEY TIKFKDETISNLKINLSGYYQLENSALTVMGVMQLRNKGLLKISDESIRNGLKNTFWAGR MERVNDSPMIILDGAHNFDGIQRLTENFRLFNYNKLYIITSILNDKEHDKMLLEFSKYAD EIVLVSLETKRKTELDILREEAQKYCENVKVIDNLKLAIKDVINVSKRNDLIVIAGSLYL VSDTRKIIKEILKIN >gi|289656129|gb|ADCS01000061.1| GENE 20 22871 - 23386 457 171 aa, chain - ## HITS:1 COG:no KEGG:Thit_0749 NR:ns ## KEGG: Thit_0749 # Name: not_defined # Def: hypothetical protein # Organism: T.italicus # Pathway: not_defined # 6 167 5 165 171 94 36.0 1e-18 METLNISELAQNKLILLFIIKGADNLFTEEELTSFILEREILNFFLFKQYISELLESNFI IFDSKNNYHITEDGKNALELFIENIPVEIKDKIIPSIMLFKRNKTSEKSVLSSYYKDEFE RFFVNLTLKESENDILNLTLEVPNEDYAKSICENFKNNPDDFYLNIINYFD >gi|289656129|gb|ADCS01000061.1| GENE 21 23699 - 23845 195 48 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MDFKFIAIIIFLVILITIQFTLNKILRELKIISMKLDRINYEEGKYDR >gi|289656129|gb|ADCS01000061.1| GENE 22 23835 - 24356 812 173 aa, chain + ## HITS:1 COG:VC0585 KEGG:ns NR:ns ## COG: VC0585 COG0634 # Protein_GI_number: 15640606 # Func_class: F Nucleotide transport and metabolism # Function: Hypoxanthine-guanine phosphoribosyltransferase # Organism: Vibrio cholerae # 7 169 6 169 177 172 49.0 3e-43 MTDREKKIIFTREEITKRIKELGAELTKEYKDKDLIAISLLRGSFIFAADLVREIDTVLE IDFLTTASYGNSEVSSGRVKFLSELRSNIKGRDVLVIDDIVDTGHTMKSVVEKLKGYEPK SIKTCVMLDKPSRREVDIKADYVAFEIPDLFIVGYGLNYGDFYRNVPYIYAYV >gi|289656129|gb|ADCS01000061.1| GENE 23 24359 - 25282 650 307 aa, chain + ## HITS:1 COG:CAC0483 KEGG:ns NR:ns ## COG: CAC0483 COG1266 # Protein_GI_number: 15893774 # Func_class: R General function prediction only # Function: Predicted metal-dependent membrane protease # Organism: Clostridium acetobutylicum # 1 302 1 300 309 59 23.0 7e-09 MKKYKKKNLNVLSVNTFTLVLSIFFLTIGYSIQSKSFLKGTFINEVFIILIPALLLCGTG KRTEVLRIKKLSSINVIRVIIIVILSYPIILLINGIFLNFLSTFIELKNFSMDMLLKDES LSSYLFFMCIVPAICEEVFFRGALINSYDVYGGKFAILMSSLVFALFHFDIQNFIAPLLL GIIFGNLLELTGSLFASILGHFTNNLIAIFATKYLDDTVFTYLKHTDLAQDIGSLQLYII ILLFLISIVSMVLLRLLFKQMDKEKRLREERLGIRKRVREIQSIDFFNFVPILALIILYF IYYAVVF >gi|289656129|gb|ADCS01000061.1| GENE 24 25295 - 26032 825 245 aa, chain + ## HITS:1 COG:AF0112 KEGG:ns NR:ns ## COG: AF0112 COG0846 # Protein_GI_number: 11497732 # Func_class: K Transcription # Function: NAD-dependent protein deacetylases, SIR2 family # Organism: Archaeoglobus fulgidus # 2 245 3 250 253 189 41.0 4e-48 MDEILKVRDLILSSKKTFALTGAGISTESGIPDFRSSTGYYSKLDPMLALSRDILINNPK RFYKEGYVILEDLSEKKPNRGHIVLAELENMGLLNGVITQNIDNLHRKAGSKNIYEVHGE TGRVHCISCNENYPFKVMKEKVMSGEIPPHCDKCGGVIRPNVVMFGDMMPGDFEMAVEEL MDTELLIVIGSSLTVSPVNYLPRYVKKLVIINDTPTLQDKMAEVVVRGKSGEILSQILDE VKKLR >gi|289656129|gb|ADCS01000061.1| GENE 25 26029 - 26751 697 240 aa, chain + ## HITS:1 COG:CAC2371 KEGG:ns NR:ns ## COG: CAC2371 COG0500 # Protein_GI_number: 15895638 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Clostridium acetobutylicum # 3 239 4 244 252 125 40.0 1e-28 MIYAEFANIYDSLMYDFDYNIVSSFIEDILKIENKKVKHVLELGCGTGNLTELICDKYSV DAIDLSEDMLSVAEQKLRNKNVRLFKQDMKNLDIEDKYDLVLSICDSINYLLDEKDVKNL FVKVFMQLNENGLFIFDLNTKNKFENMDNTYVDEVDGVFCVLENFFDAKTDINLYSVNFF ENRGELYERFYEEHEERAYSIEFICNALKDAGFKKIKMYDEYKFDENVEESDRIVYVVEK >gi|289656129|gb|ADCS01000061.1| GENE 26 26755 - 27633 887 292 aa, chain + ## HITS:1 COG:BS_yacC KEGG:ns NR:ns ## COG: BS_yacC COG1281 # Protein_GI_number: 16077139 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Disulfide bond chaperones of the HSP33 family # Organism: Bacillus subtilis # 1 290 1 288 291 244 44.0 1e-64 MDYLVRAVDIDGNIKISAVITTDIVEKARVTHSLSKTASAALGRTLSVGVIMAEALKNEN DSITINIKGDGDIGRIVVSGKNDGNIKGYVENPLADTDSRVIDNKLDVGKLVGNGTLTVV TDLGLKEPYVGQVQLVSGEIAEDFANYFYTSDQVPSVVSLGVLVDTDYTIKAAGGFVLQL LPGAEEEIISKIEKNLKDLDSVTSMISDGYLPEDIIKRVLSGFEVKILSVKKVYYNCDCS REKVEDAIISLGKKELEEILKTDKKAEMKCYFCNKTYELNEAELKSLVDKID >gi|289656129|gb|ADCS01000061.1| GENE 27 27657 - 28139 379 160 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299144498|ref|ZP_07037577.1| ## NR: gi|299144498|ref|ZP_07037577.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 160 1 160 160 271 100.0 1e-71 MKKILIVTVIVFLLTTCNYKDLSNMEMKSKNNLQVLKFSSGEEYRFSKVDFFDFKENGNY KPLKIDDEQRKKALELLSTLEKTTDGTKIYLALHDGDILVKFDYDESEIYDDIRIYDIKP FGNKNKRYYKFNSKYKNIDGVYEVDGSIDLLKELRIILGL >gi|289656129|gb|ADCS01000061.1| GENE 28 28822 - 29340 611 172 aa, chain + ## HITS:1 COG:CAC0634 KEGG:ns NR:ns ## COG: CAC0634 COG4720 # Protein_GI_number: 15893922 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Clostridium acetobutylicum # 3 163 9 181 185 64 33.0 1e-10 MKKSEVRELVITSLFIALVYIFTWLIKIQLPIGAKGGLIHLGNIPFFIAAILFGKKVGML SGAIGMGLFDLTSGWVTWAPITFITCLVMGYAISAINGDKVEFKKLILSFFAAAILKVLG YYIGEAILFSSLVVPLASIPGNLIQIAVSSIIILIIIKPLESAFNYISNSKN >gi|289656129|gb|ADCS01000061.1| GENE 29 29545 - 29736 237 63 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169824369|ref|YP_001691980.1| 50S ribosomal protein L28 [Finegoldia magna ATCC 29328] # 1 61 1 61 71 95 68 5e-19 MSKKCEICGKQKTFGNTISFSHKRGNRSWSPNIRSVRAIINGQHRKINVCTRCLRSGKVE RAI >gi|289656129|gb|ADCS01000061.1| GENE 30 29885 - 30238 636 117 aa, chain + ## HITS:1 COG:CAC1734 KEGG:ns NR:ns ## COG: CAC1734 COG1302 # Protein_GI_number: 15895011 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 5 116 4 116 116 94 48.0 4e-20 MAANIKTESGNIVIENNVLANIAGISAMESYGIVGMASKNAADGLLEILRLDNLSRGIKV NTENGAINIELHVVLEYGVNISAVGENIIDRVKFNIESLTGLSVENIEVLVEGIRLK >gi|289656129|gb|ADCS01000061.1| GENE 31 30251 - 31927 1895 558 aa, chain + ## HITS:1 COG:CAC1735 KEGG:ns NR:ns ## COG: CAC1735 COG1461 # Protein_GI_number: 15895012 # Func_class: R General function prediction only # Function: Predicted kinase related to dihydroxyacetone kinase # Organism: Clostridium acetobutylicum # 6 558 6 547 547 422 42.0 1e-118 MRIERLDGILLKKAINGAVNYLILNKDQINALNVFPVPDGDTGTNMSLTAKSSLKQVGLV ENEKSAYEIAKAAARGSLMGARGNSGVILSQLLRGFSEGINGLDEVCIEELALAFKKASE TTYNAVMKPTEGTILTVGRETADFSVKNYKNYHDILEFLKACIEEANKSLDKTPELLKVL KDAGVVDAGGKGLVTLLEGAYKALMGEEIIGEEDDVMKKKAQKEINFGPADESIKYGYCT EFIINTDYEDIESFKSKLAPLGDCLLVVGGAGTGLIKVHVHTNHPGKALEYAVELGGLQD IKIDNMRYQHREVLFNEQEVENARQMEQSQEEAKEDFAIDKDYSFIAVSMGDGMSDVFNS LGVDYIVEGGQTMNPSTEDFLNAVDKVRGNDVFIIPNNSNIILAAEQAQKLSERNIHVIP SKSVPQGISALLAFNSELNADENKSNMTDALELVVSAQVTYAVRDTQMNGKDITTGDIIG LSGKEILSCGKDVNDVTKELIESLVNDEISMITLYRGEDTQEELSEKLVEELQEEYSDLD IDVIYGGQPLYYYIISLE >gi|289656129|gb|ADCS01000061.1| GENE 32 31970 - 34012 2217 680 aa, chain + ## HITS:1 COG:CAC1736 KEGG:ns NR:ns ## COG: CAC1736 COG1200 # Protein_GI_number: 15895013 # Func_class: L Replication, recombination and repair; K Transcription # Function: RecG-like helicase # Organism: Clostridium acetobutylicum # 1 673 1 673 678 532 42.0 1e-150 MRLEDTIRYLKGVGPKREKKFNELGIFTIRDLLTYFPRDYDDQSNFKKLYEAIIDEKATF RVKFLSVLENRKIRKNLFITTFLAEDSSGQAKISFFNMKFIKNQISLNDEYLVSGKVNRF KGQVQITNPTFEKASDANRVGTIYPIYPLKKGVFNNEIVNLVHQAVEMNLFEENLPQYLV KKYNLMDKNEAIKNIHMPYDKKSFIRARQRLVFEELLIFQLSIFMLKNQDEIVKVIPYKI DDRIYKFIDNLPFLLTDGQKRVVDEIFEDMKSGNRMNRLLQGDVGSGKTIIAIISMYLAY LNGYQSTIMAPTEILAKQHLESFRNILEPLGVKVELLVGSTTKKNRDRILTGIYNGEIDI LIGTHALIEDTVEFKNLGLNITDEQHRFGVRQRQTLNTKEKTAHTLVMTATPIPRTLALI LYGDLSISTIDTLPPNRKKIDTIAINESMLNRGLSFIREQVKKGRQAYIICPLIEESENF DLDSATEVFNDLRKNYFSDIRVALLHGKMSSDEKNSVMQDFKDGCTDIIVSTTVIEVGVN VPNATVILIYNAERFGLAQLHQLRGRVGRSVHKSYCILYNSSNSKVSWQRMKVMTESTDG FYIANKDLSIRGSGDIFGTRQSGIMELKLADLVRDTEILKYATIEAREILKDDRKLIENK NSNLRKEISNTFKVDSTILN >gi|289656129|gb|ADCS01000061.1| GENE 33 34066 - 34611 269 181 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764797|ref|ZP_02171850.1| ribosomal protein L29 [Bacillus selenitireducens MLS10] # 1 178 13 192 199 108 37 9e-23 MRVISGKNRGLKLLSPRDLRTRPTEDRIKENVFNLLGQNFFDANVLDLFSGSGSIGIEFL SRGAKFCYFVDNDKDAIDTINKNIKKAHCENNYKVILSGALKVMDRLCGEKFDYIYIDPP YDNSELYLKSIEGILEKNLLEKDGIIIIEEDSSKKLDFTKYLNLIKEKKYGSTSVSIWSL K >gi|289656129|gb|ADCS01000061.1| GENE 34 34608 - 35087 341 159 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764798|ref|ZP_02171851.1| ribosomal protein S19 [Bacillus selenitireducens MLS10] # 4 158 7 161 164 135 41 4e-31 MRVIYAGSFDPITNGHIDIIKRAKDTFGEVIVAVLVNKNKKGLFSVKERMDLLKEVLKDE KDIEVDSFEGLLVDYAKEKKCRTIVRGLRSASDYVNEYTLAMANMHYKDGVETVFLLSSN ENIFVSSTLAKEVAQFDGDLSLFVPEVVGKAMKEKLNRR >gi|289656129|gb|ADCS01000061.1| GENE 35 35092 - 35532 709 146 aa, chain + ## HITS:1 COG:MT2997 KEGG:ns NR:ns ## COG: MT2997 COG3599 # Protein_GI_number: 15842473 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division initiation protein # Organism: Mycobacterium tuberculosis CDC1551 # 3 135 6 154 247 58 26.0 3e-09 MNLMELVEELEDLVETSSQIPLTGKVMLEREEVLEIVNEMKNEIPTEVREAKRISSDRDS IIEGAQSEADKIIAGAKAHAEEIISHDELVLQANQRAEEILKSANEESNQIREGARDYAD GLLENTQVNLSEIIKMLNENRKELRG >gi|289656129|gb|ADCS01000061.1| GENE 36 35715 - 36251 640 178 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299144507|ref|ZP_07037586.1| ## NR: gi|299144507|ref|ZP_07037586.1| ferrichrome ABC transporter (binding protein)- like protein [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 178 4 181 181 303 100.0 2e-81 MKKTFYLLAVFTVFLCLVTCGSKQTDNVNLEKNNSIKDNVTKEQNMITMEEVGKVEPDNM KNIKVIAGSDKIIDILEKLGYENVVAVPTNLKDKGYVDAVEFGNIEDPDYDLLKELKADI FITDESVEYKKRPNESLSIKILTCSFETEEQTKNSIEYIGKELGLSQKAQEIIDTMVQ >gi|289656129|gb|ADCS01000061.1| GENE 37 36358 - 36495 101 45 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLFPWIFKAICDNLESEIQPMIHNFIISVLTVIVAISVKLSIGLC >gi|289656129|gb|ADCS01000061.1| GENE 38 36517 - 37116 756 199 aa, chain - ## HITS:1 COG:lin2850 KEGG:ns NR:ns ## COG: lin2850 COG0353 # Protein_GI_number: 16801910 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecF pathway) # Organism: Listeria innocua # 6 199 5 198 198 241 56.0 6e-64 MKNRAKPIENLINQLNKLPGVGNKTAQRLAYHIIDMDFEKVKALSDAITSAKENVKQCSI CANFTDIDPCKICNDTNRDESVICVVEYPKDVEAMERATCYHGMYHVLHGTISPNKGIGP NNLKIRELLKRLENNNIEEIIIATNPTAEGDTTALYISKLLSPLGIKTTRIAYGIPVGGD LEYYDELTISTALENRREI >gi|289656129|gb|ADCS01000061.1| GENE 39 37118 - 37456 181 112 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149916415|ref|ZP_01904934.1| 30S ribosomal protein S21 [Roseobacter sp. AzwK-3b] # 5 110 2 107 114 74 32 1e-12 MAKGYPGFPMGGNMNNMMKQVQKLQKQMEEMQENLKNQEIEFSAGGGAVVAKVNGSKELV SITLDKEVVDPDDVEMLQDLIITAVNGAIASVEEKSNSAMNKITGGLNIPGL >gi|289656129|gb|ADCS01000061.1| GENE 40 37467 - 39113 1698 548 aa, chain - ## HITS:1 COG:lin2852 KEGG:ns NR:ns ## COG: lin2852 COG2812 # Protein_GI_number: 16801912 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, gamma/tau subunits # Organism: Listeria innocua # 2 356 3 358 579 333 48.0 6e-91 MYQALYRKYRSKTFDELVGQNHITTALKNQIANNEISHAYLFSGTRGTGKTSAAKIFARA VNCLCSENGNPCNHCENCLSILDDRVMDVIEMDAASNNSVDDIRELKEKVVYPPQNLKYK VYIIDEVHMLSKSAFNALLKVLEEPPKHLIFILATTEPEKIPQTILSRTQRFNFKRINPE IIIENLKNITALENKSCDEDVFSLISNNSDGAMRDALSLLDQCLSFTDKHISYNLATEIL GITSDDILFKISRALIDRNLENAISSLQEIYSKGKDISILISDLISHFRNLMIVKTIKNT SELLYTTRLDDYIKEACMLSVDRIIDILKILNETLLNVKYANDKRIIFEMSIIKITMLKD TVSLEERIKALEDIINSGNFKNVSETSPVKNNLKSIDNDTKIEAPSKKLSQEVFPTTVVD ELKDDEKKEEKSDIINDGNLTLEKIKSDWNNILIEIKNRKRLNIPIQLSFAKLVNFNQNT LLIEFDESNKFNYESLSNKDNINFIEDFLSKYYNDKISVKIVLTDNKEIKLAVKSAEDLF GSKNIEII >gi|289656129|gb|ADCS01000061.1| GENE 41 39282 - 39536 385 84 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299144511|ref|ZP_07037590.1| ## NR: gi|299144511|ref|ZP_07037590.1| ferrichrome-binding periplasmic protein [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 84 1 84 84 71 100.0 2e-11 MKNLNKILAVGTIGVMMFGLVACGQKKNEAPANNAPANEMTEEKAENAPANEMMEEKAEN ATEEKAENAPAEEAAENTTEEKKN >gi|289656129|gb|ADCS01000061.1| GENE 42 39628 - 40827 1452 399 aa, chain + ## HITS:1 COG:SPy0818 KEGG:ns NR:ns ## COG: SPy0818 COG2843 # Protein_GI_number: 15674859 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) # Organism: Streptococcus pyogenes M1 GAS # 40 393 66 424 430 195 34.0 1e-49 MKKIFFVLSAILILIVGFVVVDYSTNGNISGLNFISKEPVIKKNTVKQKNVDDKPEKKSV TILATGDIMYHLPLYIRNFDETKRKYDFSTYYAKMKEYIDLSDITVGNFESTVNPNRRIS GHPMFNTPKEALEYLKEIGFDVLSTVNNHCIDTHAEGIETTIDEMDNAGLKHFGTYKTAD RPMLVVEKNDIKIGFIGYSEIFNGLESLVPKDRAYMISPLDEELIKEDISKLKSLGADFI IAYPHWGVEYSKEPSEVQKYFNDYFLNLGVDAVLGSHPHVLQPVKNSSYNGKKTFTIFSM GNSISNQRIKWLPKDGVETGVFVKLYIDKENGVTSLTNVELIPTYVNRYIDENGKPQSEV LAYKDIIDGGKYRDTLDDATKAFVDKNYNLLSESLREYE >gi|289656129|gb|ADCS01000061.1| GENE 43 40820 - 41836 1191 338 aa, chain + ## HITS:1 COG:BS_ansA KEGG:ns NR:ns ## COG: BS_ansA COG0252 # Protein_GI_number: 16079415 # Func_class: E Amino acid transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D # Organism: Bacillus subtilis # 7 336 1 328 329 291 48.0 1e-78 MNSEENIKKILLIATGGTIASEQTEFGLSPKINPKEFLNHIPQSKELAQIDVKQVMNIDS TNIEPHHWLMIADVIKDNYEDYDGFIITHGTDTLAYSAAALSYLIQNSTKPIILTGSQRP ITDLITDAKKNLLDSIRFAIREQARGVYIVFDGKAIIGTRAKKLRSKSYSAFDSINYPVA AFIDGNRILQYVEDREFDKQTVFYEKLNSKVFLLKLTPGVEPEVLEYISKHYDAIVIESY GVGGLPFNSGKNFNKVLEKITSEGKIVVIATQVMLEGSDATTYEVGFSIMKDYNVLEAYD MTVESAVTKLMWILGQTNNFEKVKELFYKSINRDLLNS >gi|289656129|gb|ADCS01000061.1| GENE 44 41929 - 42384 259 151 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764774|ref|ZP_02171828.1| ribosomal protein L14 [Bacillus selenitireducens MLS10] # 1 149 1 150 158 104 37 1e-21 MAKLSNSIEDFIMSLLEETDGTLEIQRALIADRFNCAPSQINYVLTTRFTPYKGYYVESR RGGGGFIRIVRVELKNKNSLNKLFYDEVGNSITKDKADQILKELVRLEYITEREEGIIKV ALSDRALGDCPDIKNEVRASILKNILLVIFG >gi|289656129|gb|ADCS01000061.1| GENE 45 42394 - 42909 220 171 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764773|ref|ZP_02171827.1| ribosomal protein L24 [Bacillus selenitireducens MLS10] # 1 167 1 174 179 89 29 4e-17 MLCDSCGKKEAIISYTKMMGNDVEEVHLCADCAEKKMREDLEFNSAVTGKMENFLKEIFK LTGNLNSDIVKKKCSHCGTGFKELENNELGCEWCYDEFEDEIKSMLTSLKSSSKHKGKIP RSAGDKVVFKREEDELLNKLSVAIELEEYEEAARLRDELKALRGKNEYNTL >gi|289656129|gb|ADCS01000061.1| GENE 46 42881 - 43864 329 327 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764772|ref|ZP_02171826.1| ribosomal protein L5 [Bacillus selenitireducens MLS10] # 1 324 19 351 365 131 26 1e-29 GGKMSIILFSEIRLDRNVKGYNFPSTINKDEALEITEKVEYAIRNRKYKKFLTSEMSSLD KLKHFEENGAGDIFKHEDISSIFISDEDPAVMVNGTNHISIFSSSEKLDLKNLYERVSRI DDLIDANVDYAYREDFGYLTANPQMCGTAMDVTIYFHLPATAYFGISSLVSSLSKLGYKV STLSSGAAQSVGSIYKISHERVIGLEEMEYIDKLLGIAREIVDIEEQNRKKLYLDKIIEL EDIVNRAVGVLSHCRIISEEEMINKMSDLFLGMELSILKPKKNMELLKTINSLKNGHLQI ERGSLLDEKSRNILRANNIRKMMKEVF >gi|289656129|gb|ADCS01000061.1| GENE 47 43864 - 46302 2090 812 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 3 786 2 798 815 809 51 0.0 MDIFGKFTEKSQKALLFAQTEAREGRRNYVGSEHLLLGIMRVENSKGAKILSNLGLNYNS LKSAIYEVVTMGQDVISSNLIYTPRTKRIFELAFEAAKEDESEFVGTEHLLIGILREGQG VAALVLKRIGIDSDALEESILNIEDEEIDERNKKESSLEKYTQNLNSRAEQGKIDNIVGR EKEIERIIQVLSRRRKNNPVLIGDPGVGKTAIVEGLAQKIQNREVPEIIQDKIIRTLDVS GLIAGAKYRGDFEERLKSVIDEAIKSENTILFIDELHVIIGAGAAEGAMDASNILKPMLT RGELQIIGATTIGEYRKQIEKDPAFERRLMPIIIEEPTVEDSIKILKGLREGYENHHNVI ITDDAIDAAVKLSDRYLTDRFLPDKAIDLIDEAASKLKISAYKTPDFKSEYTRELNDLTR QKNIAVEAQDFELAASIRDKEKALKKEYENREQEYNSSKKKDRVTYEIISKIVSDWSKVP VVKMDEKQNKKLLHLEGNLKKNVKGQDDAIASVSKAIKRARIGLKDPNKPIGSFIFVGPT GVGKTYLAKMLAKELFGSEENLLRIDMSEYMEKHSVSKLVGSPPGYVGYDEPGQLTDAVR TNPYSVVLFDEIEKAHPDVFNILLQILDDGRLTDSKGRTVSFKDTLIIMTSNAGASFLKN KSSIGFSSVDGTIKEYENMKMLINKSLKDVFKPEFLNRIDEIIVFRELGEKEVQSIVKNM LEKLAERLFEMGIRVKFTPRVVKYISDIGFDTEFGARPLERAIRTNIEDELAQKILEGKI KEGNKIEIGFNKKLTIKKLSGVRDEKKEQVQV >gi|289656129|gb|ADCS01000061.1| GENE 48 46274 - 47638 1342 454 aa, chain + ## HITS:1 COG:L0303 KEGG:ns NR:ns ## COG: L0303 COG1066 # Protein_GI_number: 15674046 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted ATP-dependent serine protease # Organism: Lactococcus lactis # 2 427 3 423 453 340 44.0 3e-93 MKKKNKFKCKKCGYISSGYFGKCPECGDWNTFEEIIEVDEKKINAKATEKSTSAKKLKEI ESITSFRIQSTIEEFNRVMGGGIVRDSVSIITAKPGAGKSTLLLQVANDMAKQGFKVLYA SGEESESQIKNRANRVVDFISENIYVYSDNTMDNVLEEIEKTDPDFIIIDSIQTFVLRDI PSRPSTPTQIMECAYKMVEIAKNPLRPRVVFLVGQMTKEDELAGVRALEHLVDTVLLIEN ESNEELRGLLATKNRYGSTGEMGFFLMTEKGLESLDNPSEYFMTYRKEGTELPGSALSVI REGTRPIILEIEALSSQSFLPYPSRVGECLNREHLSTLISILEQRAGLRLMDKNIVVKTT GGIKLKEPAVNLAVMMSIYSSLKNVAIDTQTVFISDVGLTGELKSVPSIEIRLKEAERMG FKRAFIPPVKTEFENVKNLKIYKCKTISDVIEKI >gi|289656129|gb|ADCS01000061.1| GENE 49 47732 - 48316 733 194 aa, chain + ## HITS:1 COG:CAC2887 KEGG:ns NR:ns ## COG: CAC2887 COG1435 # Protein_GI_number: 15896141 # Func_class: F Nucleotide transport and metabolism # Function: Thymidine kinase # Organism: Clostridium acetobutylicum # 6 191 8 195 195 132 40.0 4e-31 MHQYKGRLIVHTGSMFSGKTSSLEREMKRFAIAGYKTVAFKPSIDTRADREKIVTHDNTY LSAVMVNNIFELVKYVSKSDFEVVGIDEVQFLGGEVEEILKEINELLNSGKTVVVAGLDM DYTSKPFEIVKELMSRSDYLNKHHAVCTVCGADAWVSHRKTKSDERIVIGATEEYEPLCR NCYNEILKKELDEK >gi|289656129|gb|ADCS01000061.1| GENE 50 48359 - 49444 1434 361 aa, chain + ## HITS:1 COG:yeiC KEGG:ns NR:ns ## COG: yeiC COG0524 # Protein_GI_number: 16130104 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Escherichia coli K12 # 54 361 1 310 313 198 36.0 1e-50 MTPRENEIMQLIKKNPAISQQKIADLLNIKRSSVAAHIKNLSSQGYILGRQYVLRDEPYV VVIGGANVDIVGYSDFKLIKNDSNPGRIIQSTGGVGRNIAENISRLNVRTSIISVIGDDD KGRFILNELNSLGIESDSIFVMHDCNTSVYLAILDENRDMDIAINDMEIINKLTPELIEK KQRMIENAICCIVDTNLTRETLEFLFKNINQKYFVDCVSVNKAEKLEGLLNNVYFLKANK YEAEFLSKVKIDSLEDAKKSAKKIIEQGVNSVVITMGDEGSLYADEKDMLHVSSNTMDIV NASGAGDAFMAGYVYSYIKDYKLTERMKFATASSRIALMSEKTNSEKFTVKNIEGEVKNV K >gi|289656129|gb|ADCS01000061.1| GENE 51 49434 - 50360 1173 308 aa, chain + ## HITS:1 COG:yeiN KEGG:ns NR:ns ## COG: yeiN COG2313 # Protein_GI_number: 16130103 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Uncharacterized enzyme involved in pigment biosynthesis # Organism: Escherichia coli K12 # 13 308 13 309 312 345 58.0 5e-95 MLSREMMKKYMVISPEVQDAMDNGYPIVALESTIISHGMPYPQNLETALACERIVRENGA IPATTAIINGKIRVGLSEEELKFMATSKDIIKCSRRDYPYIIANKLNGATTVATSIITAS LAGIKLLVTGGIGGVHRGAEETFDISRDLQELAGTDIVVVCAGAKSILDIGLTLEYLETF GVPVLGYKTDDMPAFYTRKSGYKLDYKMDSVAEIANTASTKWELKLSGGVLVANPIPEED AMDENLINSAIESALKEAKEKGITGKETTPFLLGKVLEVTSGKSLVSNIALVENNAKVGA QIARELYR >gi|289656129|gb|ADCS01000061.1| GENE 52 50338 - 50859 723 173 aa, chain + ## HITS:1 COG:lin2060 KEGG:ns NR:ns ## COG: lin2060 COG1607 # Protein_GI_number: 16801126 # Func_class: I Lipid transport and metabolism # Function: Acyl-CoA hydrolase # Organism: Listeria innocua # 20 164 17 162 172 112 42.0 4e-25 MQENFTDSVKKTSYSRAFFTHATLPTDLNEGGTVYGARLLEWADNLAGVVAIKHRRGSVT TASFDSFDFLNPIRLGDFIFGEAYISGVGAKSMEIFVKFIGENSVTGDRYLAAMAFITYA ALDLKDGETLPKIEGETEDEIRFIADYEKRRAKIKERRERNKDLESRIDLYAI >gi|289656129|gb|ADCS01000061.1| GENE 53 51025 - 52533 1618 502 aa, chain + ## HITS:1 COG:no KEGG:CHU_0938 NR:ns ## KEGG: CHU_0938 # Name: not_defined # Def: hypothetical protein (EC:3.2.1.-) # Organism: C.hutchinsonii # Pathway: not_defined # 235 444 987 1182 1969 72 30.0 6e-11 MKRTKVFYLTVAVTLSFMIISQSVFAKAMSFTDVPTSAWYYNDVNLAYEKGLINGRSEKI FAPDENMTYAEAVKLAACMHQKATMGSVTLTNGNPWYQTYVDYAKNNGIISGELAWMSSA TRAGYMAIFAKALPASEMTEINTIADGSIPDVPMTMTNAAEIYKLYKVGIVQGVDVLHNC SPNSNIKRSEVAAILSRMMDKSKRLTFSMSGTNKEFEITKQPTDQTISFESWATFEIQAK GEGLTYQWEGLNNNEFVKLNDSSEISGSNTSILRLKGVANFNGVKGRCVVKDKNGNTLIS QVVSLTVTGISNTKPVILVEPSDISAKIGDTVYVEVVATGEGLTYQWEGQMPGYSFSSLQ GLSGISGINTNRLGVVVSEALAGAKCRCIIKDKNGNTVITREALLTVQPIPLKITKQPVG QSGSAGSSWTLSVEAEGVGLTYQWYSMVLMNYPEPIDGAVYSSYTTSLPIISRRYYCIVK DKFGNTVKSDTVTLSGTNVVYP >gi|289656129|gb|ADCS01000061.1| GENE 54 52592 - 52690 76 32 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MDTNISHILKFKVEIKNTDNYINIFIKCIFDV >gi|289656129|gb|ADCS01000061.1| GENE 55 52797 - 53078 261 93 aa, chain + ## HITS:1 COG:BS_ylxP KEGG:ns NR:ns ## COG: BS_ylxP COG1550 # Protein_GI_number: 16078727 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 2 84 1 83 92 66 36.0 1e-11 MVVGTCKIKLRLFSPNSLKEKRKIIKSLIERLKNKFNISIAEVEDNDLWQSSVIGIAVVS NDSIFADEVINKVLNFIENFNDVEIIECDIEML >gi|289656129|gb|ADCS01000061.1| GENE 56 53085 - 53729 626 214 aa, chain + ## HITS:1 COG:CAC0689 KEGG:ns NR:ns ## COG: CAC0689 COG0177 # Protein_GI_number: 15893977 # Func_class: L Replication, recombination and repair # Function: Predicted EndoIII-related endonuclease # Organism: Clostridium acetobutylicum # 5 211 1 207 211 239 53.0 4e-63 MRKLLTKKEAEQVLDVLEICYPDAHCELEHNSPFELLVSTILSAQCTDVRVNSVTRDMYK KYNTPLDFIELGIFGIEEIIKPCGFYRNKAKNILMTSKKIVEEFDGQVPKTIEELMSLPG VGKKTANVVASTCFGVPAIAVDTHVFRLANRIGFVDEKDVLETEKALQKKIEKNRWTRAH HLLIFHGRRICKARNPICEECKISSYCKYFKREK >gi|289656129|gb|ADCS01000061.1| GENE 57 53733 - 55148 1154 471 aa, chain + ## HITS:1 COG:CAC0691 KEGG:ns NR:ns ## COG: CAC0691 COG2720 # Protein_GI_number: 15893979 # Func_class: V Defense mechanisms # Function: Uncharacterized vancomycin resistance protein # Organism: Clostridium acetobutylicum # 34 372 34 377 411 141 31.0 3e-33 MHFSNKRVISVVLAVVLLGIAIIYYSNESKSEKIHRGIKISNIDVSELSVEDAILKITST KEEENKDAKLKFSTEEMNYFIPYKDLGYTLDVETAVKEAYLIGRSNSIIKNFFDIIYTSI VHKNIELSESFSVEKVDATINFLVEKVYKKPKNAEISYSAENGFNLSKEEQGSYLDSKKL KELIFHDIDKKEDIQLPILKSEPTVYIKQFEGIDGLLSEFSTDYSKSEDNRKDNIALGAS HFNDFILKSGEEVSFNNVVGDISLLTGFKDAGIIINGEFDRGVGGGICQVSTTLYNALIR ADLDIVERYNHTRPISYVPLGTDAAVSQGYKDLKFRNNLNHNIYFKAFADGNELKFQIFG NKADRDYQVEIEPKLLAVTEPNVIIQYSDAIEEGKEEVKKPGAKGYSYVTYKNIIKDGQI VETQKISSSNYIAQDKVVVIGEGDPDVIREKKEREKKNYNKEKTNKKTNND >gi|289656129|gb|ADCS01000061.1| GENE 58 55374 - 57536 1885 720 aa, chain + ## HITS:1 COG:BS_topB_1 KEGG:ns NR:ns ## COG: BS_topB_1 COG0550 # Protein_GI_number: 16077493 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Bacillus subtilis # 1 569 1 575 575 590 52.0 1e-168 MKKQLILAEKPSVGRDIARVLNVTKKNNGYFESNNKIVTWALGHLVTLSTPEEYDKRYEK WNLEDLPIIPNKMKLSVIKSSRAQFNVVKELINRKDIDEIVIATDAGREGELVARLILTM SGSKKNLKRLWISSVTDKAIKEGFANLKPAEKYHNLYLSALSRAQADWLVGINGSRALTM KYNARLSCGRVQTPTLNLIKMREDEITSFVGKDYFKLKLIVNKMTFNYIDDNNSMTIYEE DKVNKILNDVKGGSIRIDDIEEKLKKKYPKELYDLTNLQRDANVRYGYSAKQTLDIMQNL YEKHKILTYPRTDSRYLTEDIVPTISERLKSMNTGSYRKYINEILTGKINASKNFVDDSK VSDHHAIIPTEQPLRIDELDDKEIKIYDLVAKRFLSNLMKPYEYKEIKIYASSSGHKFVA RGTIDINPGYKAIDSFEDDEEENQKLYEIKKGDILKISDIKKSSQKTSPPAYFTEGSLLL AMENPQKFVKNISSQKASTLKETGGIGTVATRGDIIEKLYNTDLIENNGNYLRTTSKGRQ LLELVPNKLKSPELTADWELKLKNIESGKLKDENFLKEIKEFSIANIEEIKNSNYQYKHE NLTNIKCELCGKLMLKVNRKDKELLICQDTNCGNRKTLSIITNVRCPNCHKKLKLLMDNK NYICETCGYRESKDNMDKKFAENKNKMKKSEVKRYLSKQSDDEINNSLAAKLSGLKFGEK >gi|289656129|gb|ADCS01000061.1| GENE 59 57536 - 58084 456 182 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299144528|ref|ZP_07037607.1| ## NR: gi|299144528|ref|ZP_07037607.1| hypothetical protein HMPREF0629_01414 [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 182 1 182 182 309 100.0 6e-83 MNVFKRKENREKSIYDEILDFEESGQKGSICLNSYFVEKSSDFSIDELKTALLDYYEREN KAVEKFCNYFQYHRAEDIIRKFENYIFSMEVFNEQKLVGMSILLMRDTRSIEAMKFGIML SEFYSLENVRAAIKIITDLGAYEEFTEISLKALKQVNFYPVLRDNIQRRGNEKVKEIVRN ME >gi|289656129|gb|ADCS01000061.1| GENE 60 58081 - 58315 254 78 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299144529|ref|ZP_07037608.1| ## NR: gi|299144529|ref|ZP_07037608.1| S1 RNA binding domain protein [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 78 1 78 272 121 100.0 1e-26 MKLGRCELEVKKVLKKEIILTNGKEDIKLKEFDDKLKVGEKLNVFIYDSSKDNRVATIQK TLLDVGEVAKLKIADKTK Prediction of potential genes in microbial genomes Time: Fri May 27 07:54:42 2011 Seq name: gi|289656128|gb|ADCS01000062.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.62, whole genome shotgun sequence Length of sequence - 6495 bp Number of predicted genes - 6, with homology - 6 Number of transcription units - 3, operones - 2 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 3 - 845 262 ## PROTEIN SUPPORTED gi|212640476|ref|YP_002316996.1| Uncharacterized protein conserved in bacteria containing two ribosomal protein S1-like RNA-binding domains 2 1 Op 2 . + CDS 847 - 2409 1155 ## COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase + Term 2450 - 2485 1.8 + Prom 2521 - 2580 1.6 3 2 Tu 1 . + CDS 2654 - 2821 244 ## gi|299144531|ref|ZP_07037610.1| conserved hypothetical protein + Prom 2904 - 2963 4.3 4 3 Op 1 . + CDS 3047 - 3907 968 ## HMPREF0424_1228 hypothetical protein 5 3 Op 2 . + CDS 3888 - 5330 1160 ## COG1002 Type II restriction enzyme, methylase subunits 6 3 Op 3 . + CDS 5341 - 6493 846 ## CGSHiEE_01345 histidine kinase Predicted protein(s) >gi|289656128|gb|ADCS01000062.1| GENE 1 3 - 845 262 280 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|212640476|ref|YP_002316996.1| Uncharacterized protein conserved in bacteria containing two ribosomal protein S1-like RNA-binding domains [Anoxybacillus flavithermus WK1] # 17 267 9 270 285 105 29 9e-23 KRNCEEYGMKLGRCELEVKKVLKKEIILTNGKEDIKLKEFDDKLKVGEKLNVFIYDSSKD NRVATIQKTLLDVGEVAKLKIADKTKFGYFVDIGLDKDIFLPYQETIGRVDIHQSYLMQL YIDRSDRLCVTMKIKDKLSMNDEFKVNDIVKGTIYEIDSKGAHVAINDKYDGMILKEELK GIYRVGEEVETRIQRILKDGRITLTLRQKAYKQMHYDAEMLLELIEDNGGVLNLGDKSDP ELIKEVTGLTKSAFKRAEGSLYKDKLVELYPEKIVLKVNK >gi|289656128|gb|ADCS01000062.1| GENE 2 847 - 2409 1155 520 aa, chain + ## HITS:1 COG:SP1029 KEGG:ns NR:ns ## COG: SP1029 COG2265 # Protein_GI_number: 15900900 # Func_class: J Translation, ribosomal structure and biogenesis # Function: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 516 8 543 543 357 38.0 3e-98 MEFLIRDFDFKGRGFAKYNEKAVFLDGGVIGDKVLAEIVEDKKKYSIAKISKILEPSPYR VKSKCPYIRKCGGCDFLEYDYEKQLEWKKEKVNNDMLRIGNIECKVENTIGMQYPYYYRN NIQLKVVDGKIGYFSKNSKDLISIKHCLIAGKEINRAIEILKNWKGLNSVDSIIIRQNKL GELFIVLVTKSEIKKVNQLLSELLELKICGIFENKNTLNKFRFGREFKKLYGEDYLTDEL CGFKFKLSPVSFFQVNTTQTEKLYQEAIDYLEINKQDIIFDLYCGIGTISLFAARNAKKV IGVEIVENAIEDARKNAEFNSVDNVRFICGKSEEILEKLLDEEKIIPNKIILDPPRAGLD EKLIKKLLEIMPEKISYISCNSSTQARDLKLLKEKYKIEKIQPVDMFCNSVHVETVVYLS KLKSDEHVKVEVNMSEFEPTGSERRKFGTYEEIKKYILDKYGFKVPTLYISQIKQKCGLE LGENYSKSKKDNNKVPECPKEKEEVIMDVLKHFGMIVQEG >gi|289656128|gb|ADCS01000062.1| GENE 3 2654 - 2821 244 55 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299144531|ref|ZP_07037610.1| ## NR: gi|299144531|ref|ZP_07037610.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 386 str. F0131] # 7 55 1 49 49 91 100.0 2e-17 MFFIWSMVVHGQFQLNEELTDVLMYYNDVLLCYGISVEELKGSYTSKFEKNMKRW >gi|289656128|gb|ADCS01000062.1| GENE 4 3047 - 3907 968 286 aa, chain + ## HITS:1 COG:no KEGG:HMPREF0424_1228 NR:ns ## KEGG: HMPREF0424_1228 # Name: not_defined # Def: hypothetical protein # Organism: G.vaginalis # Pathway: not_defined # 2 278 5 281 286 408 76.0 1e-113 MSKVKKDTIEAKGFAIQIYTEDFKNDYISLTDIARYKNVHEPKDVVKNWLRVRDTIEFLG LWETIHNPNFKGVEFDSFRKEAGTNAFTLSPQRWIENTNAIGIVSKSGRGGGTFAHPDIA MEFASWISAEFKLYLIQDYKRLKSDENSKLSLCWNLNREISKINYKIHTYAIKEYLLKDL TNEQLSYKYASEADMLNVALFNKRAKQWREENPDLKGNMRDYASLNELLVLANMESYNAI LIGKGMEQKERMIELRKLARTQIVSLEKLNKKSIKKLEYFDDEKNK >gi|289656128|gb|ADCS01000062.1| GENE 5 3888 - 5330 1160 480 aa, chain + ## HITS:1 COG:CAC3535 KEGG:ns NR:ns ## COG: CAC3535 COG1002 # Protein_GI_number: 15896771 # Func_class: V Defense mechanisms # Function: Type II restriction enzyme, methylase subunits # Organism: Clostridium acetobutylicum # 102 419 507 863 993 65 24.0 2e-10 MMKKTNEKKIANKCQIFTPTNYVKELLDSVGYHKNIVNKTILENSCGDGNILVEIVNRYI EEAIELKFSNKKIKKGLENNIFGFEIDKNQFEKCICNLNLLVKKNGIQDVEWKIYNEDYL KSEVNIQFDFIVGNPPYITYSNLSQEERTFIKDKYETCRQGKFDYCYAFIEHSIKSLSSE GKMSYLIPSSIFKTVFGNKLREFMVQYIVEIKDYTKEKIFDNALVKSAIIIVDKKDCSEK IKYINMSNDSGLYICKKTIRKKWVFSNEFNIGKKRFGDYFKVSHVVATLLNKAYVINEDM YDEVDEYYKVGKFMIEKDAIMPTATPRNMRYGKEEKIIFPYKYINNQLIKYTEKEFKNLY PGAFSYLTKFKEDLIKRKSDKKSKWFEYGRTQALLGIKCEKLLISTIITDKVAVYRLDEA CIPYAGMYISLRDEHQEYNLGFAKEILESENFMEYVKKVGINISGSSLRITSKDIEEFNF >gi|289656128|gb|ADCS01000062.1| GENE 6 5341 - 6493 846 384 aa, chain + ## HITS:1 COG:no KEGG:CGSHiEE_01345 NR:ns ## KEGG: CGSHiEE_01345 # Name: not_defined # Def: histidine kinase # Organism: H.influenzae_PittEE # Pathway: not_defined # 10 383 9 425 761 141 30.0 4e-32 MEYLKYSIEDSTIAELLGVQNFSNDEAAVLELVKNAYDVGASVVKLEFVDKTTLKIIDDG DGMDSEDIKKHWMHIGKSNKGYNFIDTNNNVRVQAGAKGVGRFALSRLGKNIQLYSKKEQ KDGIVWKTDWNKSTLDLDSSIDNKGTCIVINNLREKWTPKRIEKLNEYLEKTYNDTAMKI RIIANEYDKFVKLHFPKPEPGKNCRANIILKHNKGMLYVSVFSDEFSNDAIKYCPEVDIK TYNSEINILDEFEGNEIYERGRKELSSELDKLGEFSANLFFNLNVTKHDKEKFLYKYLST DESVDSGVILYRNAFSISSFEGEKDWLGLGKRSRKSPAAASHPTGAWRVRENQVSGYVLI DKQQNIVLQDLMNRQGLDENISYQ Prediction of potential genes in microbial genomes Time: Fri May 27 07:55:01 2011 Seq name: gi|289656127|gb|ADCS01000063.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.63, whole genome shotgun sequence Length of sequence - 19820 bp Number of predicted genes - 22, with homology - 22 Number of transcription units - 12, operones - 5 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 2 1 Op 2 . + CDS 810 - 1247 247 ## CGSHiEE_01345 histidine kinase 3 1 Op 3 . + CDS 1264 - 1845 467 ## gi|299144537|ref|ZP_07037616.1| putative type II DNA methylase protein 4 1 Op 4 . + CDS 1835 - 2461 413 ## gi|299144538|ref|ZP_07037617.1| putative CRISPR-associated protein, Csn1 family + Prom 2470 - 2529 6.1 5 2 Tu 1 . + CDS 2572 - 3927 986 ## gi|299144539|ref|ZP_07037618.1| hypothetical protein HMPREF0629_01425 + Term 4114 - 4149 5.3 6 3 Tu 1 . + CDS 4312 - 4629 301 ## COG4695 Phage-related protein + Prom 4631 - 4690 5.1 7 4 Tu 1 . + CDS 4723 - 5709 959 ## Vpar_1397 hypothetical protein + Term 5733 - 5768 -0.6 + Prom 6068 - 6127 11.0 8 5 Tu 1 . + CDS 6164 - 7381 1823 ## COG1454 Alcohol dehydrogenase, class IV + Term 7414 - 7481 23.4 - Term 7408 - 7463 16.1 9 6 Tu 1 . - CDS 7480 - 8022 554 ## COG1268 Uncharacterized conserved protein - Prom 8150 - 8209 13.7 + Prom 8007 - 8066 10.7 10 7 Op 1 1/0.000 + CDS 8191 - 8988 1133 ## COG1521 Putative transcriptional regulator, homolog of Bvg accessory factor 11 7 Op 2 1/0.000 + CDS 8972 - 9913 430 ## PROTEIN SUPPORTED gi|145632364|ref|ZP_01788099.1| ribosomal protein L11 methyltransferase + Term 9980 - 10011 -0.8 + Prom 9940 - 9999 3.8 12 7 Op 3 2/0.000 + CDS 10024 - 10500 791 ## COG0782 Transcription elongation factor 13 7 Op 4 . + CDS 10510 - 12012 2150 ## COG1190 Lysyl-tRNA synthetase (class II) + Term 12158 - 12193 3.1 + Prom 12877 - 12936 7.2 14 8 Op 1 . + CDS 12967 - 13182 228 ## COG1476 Predicted transcriptional regulators 15 8 Op 2 . + CDS 13169 - 13609 413 ## CKL_1929 hypothetical protein 16 8 Op 3 . + CDS 13687 - 13848 268 ## gi|299144549|ref|ZP_07037628.1| hypothetical protein HMPREF0629_01436 + Term 13891 - 13929 0.5 + Prom 13871 - 13930 5.3 17 9 Op 1 . + CDS 13968 - 14390 455 ## COG3315 O-Methyltransferase involved in polyketide biosynthesis 18 9 Op 2 . + CDS 14405 - 14800 433 ## Apar_0762 O-methyltransferase domain-containing protein + Term 14879 - 14917 1.5 + Prom 14856 - 14915 6.5 19 10 Op 1 . + CDS 14990 - 15271 312 ## Pjdr2_4897 transcriptional regulator, ArsR family 20 10 Op 2 . + CDS 15271 - 17715 2765 ## COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases + Term 17722 - 17773 6.0 + Prom 17756 - 17815 9.7 21 11 Tu 1 . + CDS 17881 - 18519 713 ## COG0220 Predicted S-adenosylmethionine-dependent methyltransferase + Term 18536 - 18579 7.2 + Prom 18570 - 18629 12.7 22 12 Tu 1 . + CDS 18653 - 19525 1052 ## COG1686 D-alanyl-D-alanine carboxypeptidase Predicted protein(s) >gi|289656127|gb|ADCS01000063.1| GENE 1 1 - 774 435 257 aa, chain + ## HITS:1 COG:no KEGG:CGSHiEE_01345 NR:ns ## KEGG: CGSHiEE_01345 # Name: not_defined # Def: histidine kinase # Organism: H.influenzae_PittEE # Pathway: not_defined # 10 198 346 546 761 86 33.0 8e-16 LSTDESVDSGVILYRNAFSISSFEGEKDWLGLGKRSRKSPAAASHPTGAWRVRENQVSGY VLIDKQQNIVLQDLMNRQGLDENISYQLFVQIILTGIKEFERYRQKIIRKINEKNKNEEE CTIKISDEIVKNPKRIENLNTSEKNKLINEIKLFKQDSKKFKQEKANVEARYKYDVRILN ALATSGMKATSIAHEINNDRNQMEPSYDDIITALKKYCVWDIVNSPENRKIACEDIPGLL ENNHRAVKKYLALLMQF >gi|289656127|gb|ADCS01000063.1| GENE 2 810 - 1247 247 145 aa, chain + ## HITS:1 COG:no KEGG:CGSHiEE_01345 NR:ns ## KEGG: CGSHiEE_01345 # Name: not_defined # Def: histidine kinase # Organism: H.influenzae_PittEE # Pathway: not_defined # 2 126 607 740 761 65 32.0 4e-10 MNINEIVNSILEGWKKDYSWLNVEICIDDKVEFNISKDTFYTIFDNLILNSVQQNIETNE LKIKIAISRNNNKLRISYSDNGKGLQKKYLDNPRIILEPHETSRTNGHGLGMWIINNTIN LQKGEVLSISGENGFEFIFEMEETI >gi|289656127|gb|ADCS01000063.1| GENE 3 1264 - 1845 467 193 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299144537|ref|ZP_07037616.1| ## NR: gi|299144537|ref|ZP_07037616.1| putative type II DNA methylase protein [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 193 20 212 212 296 100.0 3e-79 MLYVDDKIDLYVSKYLNSYSNDKAEYKYSELKFENKYSYEDLLENNEIQKADILFLDSML FENGNVQDNKISGEELGLIIKKIFPFKEIIVITQYQDKMEYSTLKKYNSNTYHCDEDSFF QDNWNKEIVNATKNIILNRNILKNISSKRYVEKYLFEKMENSINGLSNYDNLTKADIDSL IKAFEEMRKLYEE >gi|289656127|gb|ADCS01000063.1| GENE 4 1835 - 2461 413 208 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299144538|ref|ZP_07037617.1| ## NR: gi|299144538|ref|ZP_07037617.1| putative CRISPR-associated protein, Csn1 family [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 208 1 208 208 351 100.0 1e-95 MKNDYRNTIYWVSKKNIVSEKDALEKKIKAEHSRTKIIYNQINKKDSVYNKLFRNIYSDK CSYCGITTDVVSSELFEIDHFLCESSFNGDSINAGKIKNLVLSCKKCNRAKKDFIWDEVY SSKFNVDDGSITELFYRDKNYYIKVENKFITDKTICEFYRKLKLDEEIRRLDFLLMNMYG FSKKHSSDRISEKISKYIVLLQQKRNEL >gi|289656127|gb|ADCS01000063.1| GENE 5 2572 - 3927 986 451 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299144539|ref|ZP_07037618.1| ## NR: gi|299144539|ref|ZP_07037618.1| hypothetical protein HMPREF0629_01425 [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 451 1 451 451 826 100.0 0 MRVKKFLLFLLAVLLILTSCNNHNSSDVNNDEVEMEKEQSTAIEKEGIRYSWANMSIDNH DLNLTEEQKTVLKYFDRDYFYVYHDEYENLQRYPKAYRGAQISLGGKVIKMISSTDDKFT AILQMINTFTDYEDMDIYPSPEDNLIFIRGKQTDRRIIEGDIIDVRGRYKDVEEVTVDGK SKIIPSIDVFSHNYSAPNFIEPAELYTFEEVEKVAKIIFGNDIKMSSPDYGKLREEYGTS GLYSRFYKISLDNSVNRNFSNFNIYTTTPLILDGTFDFFADQYKEIIVAPDFEHFILLFY DMNTQKGYVEYYDKGYTKIWSKEFNNIQSLPYDATVNDFYMVADNDLYILDTSTGEEKID PVFVGQKLKVNMLSDSCLLIGPGTKDNVMKVSKNGDIIWKASLNMNIGRAESIQIVDGNI VIDVAENTIDEKAGIAVLNKDGNILLETYKN >gi|289656127|gb|ADCS01000063.1| GENE 6 4312 - 4629 301 105 aa, chain + ## HITS:1 COG:SPy0555 KEGG:ns NR:ns ## COG: SPy0555 COG4695 # Protein_GI_number: 15674651 # Func_class: S Function unknown # Function: Phage-related protein # Organism: Streptococcus pyogenes M1 GAS # 1 96 53 147 150 87 48.0 4e-18 MRVLAETLAGLPLHLYKRCNANSKEKAKEYVLYFLLNDEPNTEMISFVFRETLITHFLLR GNAYGQIICNGRNEVVGLYPLIPNKMIGRLDVVIIQVSLFMMIWV >gi|289656127|gb|ADCS01000063.1| GENE 7 4723 - 5709 959 328 aa, chain + ## HITS:1 COG:no KEGG:Vpar_1397 NR:ns ## KEGG: Vpar_1397 # Name: not_defined # Def: hypothetical protein # Organism: V.parvula # Pathway: not_defined # 4 325 3 331 332 211 37.0 3e-53 MNINIWRLHTNTDNQTNYSISDYCIENNILALGWSLNDDHLKGKGSIDKLIKERQLIGRG TEEESFNKYVNFVKNNEIYENINNINRLKKDIKPYDLVWMRKGGIYWLGLVGENSRYLFN SSEESLEMDASNQRTDIKWFEIGGESDVAGAITTSFIRGNTLQRIKQNGIIEFSKYLINV LHEPIYEIEKLDKSPRVLFNLISPNDCEDLVCIWLYKKYGYFTIPSTCKKSTQLYECVLI NPENTDKKEVYIQVKKGSVDLDCSDYNNLNGEIWLFTTNGKIIGQKRENMNTIDAETIYE FAMNCKNDNLLPSKIIKWRNLLEGNLKL >gi|289656127|gb|ADCS01000063.1| GENE 8 6164 - 7381 1823 405 aa, chain + ## HITS:1 COG:YPO2180_2 KEGG:ns NR:ns ## COG: YPO2180_2 COG1454 # Protein_GI_number: 16122410 # Func_class: C Energy production and conversion # Function: Alcohol dehydrogenase, class IV # Organism: Yersinia pestis # 6 402 6 416 441 302 40.0 6e-82 MARFTLPRDLYHGKGSLEALKTFEGKRAMIFVGGGSMKRFGFLDKAEGYLKEAGMEVEIF EGIEPDPSVETVMRGAEAMSKFKPDWIVAIGGGSPIDAAKAMWIKYEYPECTFEDMCKVF GLPKLRTKAHFCAVSSTSGTATEVTAFSIITNYENGVKYPIADFEITPDVAIVDPELAET MPKKLVAHTGMDAFTHAVESYVSTANCDYTDPLAIHAIEMIQENLEGSYNEDMEKRHAMH NAQCLAGMAFSNALLGIVHSMAHKTGAAFSDYGAHIIHGAANAMYLPKVIAFNAKDETAK KRYGVIADYMKLGGNTDDEKVALLIEYCRNMNDKLNIPHCIKNYGADSYPVEQGFVPENV FLERLPEIAKLAIEDACTGSNPRIPTQEEMEKLLKAAYYDTEVDF >gi|289656127|gb|ADCS01000063.1| GENE 9 7480 - 8022 554 180 aa, chain - ## HITS:1 COG:CAC0211 KEGG:ns NR:ns ## COG: CAC0211 COG1268 # Protein_GI_number: 15893504 # Func_class: R General function prediction only # Function: Uncharacterized conserved protein # Organism: Clostridium acetobutylicum # 1 179 1 179 184 95 37.0 6e-20 MKNKTKSLTKIALLTALICVGSAITIPMNPVPITLQTFFVMMAGVLLTPVEAFLSVFIYI LLGLIGLPVFAGFNGGFGTVFTPSFGFIIGFAIGAYVISSIVKNTTDRKKLLISLLIGQV IFYAIGLPYMYVILNSLGKAPDSLYTLLSWGLIPFIPGALIKTIAVVIIAPKVKNALNKM >gi|289656127|gb|ADCS01000063.1| GENE 10 8191 - 8988 1133 265 aa, chain + ## HITS:1 COG:BH0086 KEGG:ns NR:ns ## COG: BH0086 COG1521 # Protein_GI_number: 15612649 # Func_class: K Transcription # Function: Putative transcriptional regulator, homolog of Bvg accessory factor # Organism: Bacillus halodurans # 1 256 1 253 254 267 52.0 2e-71 MLLVIDVGNTTIVFGVYKNDELVHDFRISTVKTRTSDEYGMLFYNTLAHANIEINDIDDV IISSVVPNIMHSLPSMIIKYFNKKPIVIDQSLKFDLNIKYDNPKEVGADRVVNAVAAVKK YGGPCIIVDIGTAMTFCVIDENKNYLGGLILPGIGISAEALFMRTSKLPKIEIVKPDSVI GTNTVSSMQSGLYYGFASMIDGIIDKIVLELGMDIENINLISTGGFASLLTSDSKYNIKI DKFLTLYGLKVIYDMNKEDLIEEKN >gi|289656127|gb|ADCS01000063.1| GENE 11 8972 - 9913 430 313 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|145632364|ref|ZP_01788099.1| ribosomal protein L11 methyltransferase [Haemophilus influenzae 3655] # 9 302 40 335 353 170 35 8e-42 MKKKIDGAILSPLAGYTDIAFREICSQKNAYMTVTEMISAKALYYGDKKTNELLKVSPFE KNVAVQIFGDDPDIMGYVVKNSLNSLNFSCIDINMGCPAPKIVKNNNGSALLDQPNLAYS IIRSVVENSNVPVSVKIRKGIRNTNSMEVARLAQKAGASFITVHGRTREEYYSGLSDWNY IKSVVDELTIPVIGNGDVQSYEDAMEKIKFSGVSGVSIGRGAIGNPFIFDEIYKKSIGCN YEKPTDLEKIEMALSHLKSNCAYKGEKIGILEMRKHFVGYFKGMKGSKELRDKINKINNL EEIEEIICKYMQQ >gi|289656127|gb|ADCS01000063.1| GENE 12 10024 - 10500 791 158 aa, chain + ## HITS:1 COG:CAC3198 KEGG:ns NR:ns ## COG: CAC3198 COG0782 # Protein_GI_number: 15896445 # Func_class: K Transcription # Function: Transcription elongation factor # Organism: Clostridium acetobutylicum # 3 156 4 157 158 151 61.0 5e-37 MVEKDIFFTAEGLEKIESEIEYLKTVRRKEVSERIKVALGYGDLSENSEYDEAKNEQAQV EERIVKLETMVRNAKVISETDLNTDVVNIGSTVKVKDLSDGEEEEFLIVGSAEADPLEGR ISNESPVGGKLIGLKIGEVAEVEVPDGIIKYEVVGISL >gi|289656127|gb|ADCS01000063.1| GENE 13 10510 - 12012 2150 500 aa, chain + ## HITS:1 COG:CAC3197 KEGG:ns NR:ns ## COG: CAC3197 COG1190 # Protein_GI_number: 15896444 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Lysyl-tRNA synthetase (class II) # Organism: Clostridium acetobutylicum # 1 494 18 515 515 567 56.0 1e-161 MQKSEEKKLNEMLVLRREKLNELRESGKDPFKVARYDVTNYSKEIKDNFDVFEGKKVSIA GRIMSKRRHGKIAFLDVQDKLGRIQIFARKDVLLDNYEDIKGYDMGDIIGVEGEVFKTEA GEISVRAESTLLLSKSLQILPEKFHGLKDPDLRYRQRYVDLIVNPEIKDVFIKRTKILKS IRNYLDSRDFLEVETPILATVAGGANARPFLTHHNTLDMDMQMRIANELFLKRLIVGGMD RVYEMGKMFRNEGMDTRHNPEFTNIEVYQAYADYEDMMRLTEGIFENAAMEVYGTTKITY QGTEIDLKAPWKRITMIDAINEATGVDFNKIDSDEEAQKIAKAKGLEIESDWTRGKIISE MFEEFCEASLIQPTFVLKHPVEVSPLAKRSAEDPRLTDRFEAFINTWEFANAFSELNDPI DQRERFEEQVREKEAGDDEAHPMDYDFVNALEVGLPPTGGLGIGVDRMVMLLTDQPSIRD VVFFPTMKPIVKKDEEEQEL >gi|289656127|gb|ADCS01000063.1| GENE 14 12967 - 13182 228 71 aa, chain + ## HITS:1 COG:PAB7155 KEGG:ns NR:ns ## COG: PAB7155 COG1476 # Protein_GI_number: 14520844 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Pyrococcus abyssi # 1 65 1 65 73 68 61.0 3e-12 MKNKLDELRKINGLTQEEFAKELRVSRQTISAIENGKYNPSLDLAFEIALYFNKTIEEVF TYEKEEKYEKK >gi|289656127|gb|ADCS01000063.1| GENE 15 13169 - 13609 413 146 aa, chain + ## HITS:1 COG:no KEGG:CKL_1929 NR:ns ## KEGG: CKL_1929 # Name: not_defined # Def: hypothetical protein # Organism: C.kluyveri # Pathway: not_defined # 1 145 1 147 147 114 47.0 1e-24 MKKSSLIYGLIYIILAGISLYVAIYFGDNKMTGIFYGLTGALGGSGIVTIIRYFYWQKNK EKYQEKLEIEEIEQQDELKQKLRDKSGKYTYWIGMLIIALSIIVYSVLGVLNIMDAEHIV IYLGTYLISQVFIGIIVFNHLLKKYD >gi|289656127|gb|ADCS01000063.1| GENE 16 13687 - 13848 268 53 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299144549|ref|ZP_07037628.1| ## NR: gi|299144549|ref|ZP_07037628.1| hypothetical protein HMPREF0629_01436 [Peptoniphilus sp. oral taxon 386 str. F0131] # 1 53 1 53 53 68 100.0 1e-10 MKLKKNKQVPVGMLFLVLAIILNRVSNVSDLLIGIMYGISIGLLLIGIFSNRK >gi|289656127|gb|ADCS01000063.1| GENE 17 13968 - 14390 455 140 aa, chain + ## HITS:1 COG:MA2765 KEGG:ns NR:ns ## COG: MA2765 COG3315 # Protein_GI_number: 20091588 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: O-Methyltransferase involved in polyketide biosynthesis # Organism: Methanosarcina acetivorans str.C2A # 3 133 8 134 348 86 34.0 1e-17 MEKVKIEKNTVQETLIVPLYGRKMCSEKFPELYMDIFANRLCDRLDYDFSELEKKKNSFL YEFGSLEAAMRQLDIIYEIKEYLSKYPKATIVNLGCGLDETGKTCDNGLCHIVNVDFPDV ISIRKQLIFEQDREKMLLVI >gi|289656127|gb|ADCS01000063.1| GENE 18 14405 - 14800 433 131 aa, chain + ## HITS:1 COG:no KEGG:Apar_0762 NR:ns ## KEGG: Apar_0762 # Name: not_defined # Def: O-methyltransferase domain-containing protein # Organism: A.parvulum # Pathway: not_defined # 1 130 148 278 280 143 50.0 2e-33 MDEVDGSNGVIFFAAGVFHYFKKNEVKVLVLELSKKYSKGCLIFDSVGKLGLKLMMSKVL KNMGISDVEGLFYVNDPIQELNWSEKIKITSKGYMLGYYDMKSPNIRFSHRLLAKIGDKV MKMSVNRMDFK >gi|289656127|gb|ADCS01000063.1| GENE 19 14990 - 15271 312 93 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_4897 NR:ns ## KEGG: Pjdr2_4897 # Name: not_defined # Def: transcriptional regulator, ArsR family # Organism: Paenibacillus # Pathway: not_defined # 10 92 12 94 98 85 43.0 4e-16 MDREIIIRNADILKGIANPIRLCLVKKIFENGSCNVSFFTDCMEVSQSNISQHLAKMRDL GILDYKKDGKNVNYFIKNEKINEIIKVLFKEEK >gi|289656127|gb|ADCS01000063.1| GENE 20 15271 - 17715 2765 814 aa, chain + ## HITS:1 COG:YPO3001_1 KEGG:ns NR:ns ## COG: YPO3001_1 COG0446 # Protein_GI_number: 16123182 # Func_class: R General function prediction only # Function: Uncharacterized NAD(FAD)-dependent dehydrogenases # Organism: Yersinia pestis # 1 452 1 448 459 429 51.0 1e-119 MSKKIVVVGGVAGGATAIARIRRLDENAQIILFEKGEFVSFANCGLPYYIGGTISSRDSL FVSDIESITSKYNVEIRNFSEVIKIDKENKKISVVDLKVNKEYEESYDVLLLSTGSTPFI PQMDGLESENVFTLWNIPDTDKIYNFIKINKPKNAVVAGGGFIGLEMAENLSELGIKVTL VEFADQIMPPLDKDMAKLVQNHLEHKGVKLILNTGVKSIFDNGNKILLSDGSKIDTDMTL LSIGVRPNSKLAKDARLELNERGGVIVNDNMQTSDSFIYAVGDMIEVNNPISLQKTMIPL AGPANKQGRAVAANVLNLKKETYDGTIGTSVAKVFDITVASTGENEKALNKRNLKLNKDY GIALIHPMSHAGYYPGATPLTLKLIFSLENAKILGAQIVGYDGVDKRIDTIATSIHFNGT VYDLTKIELAYAPPYSSAKDPVNMAGYVATNILEKLTDPVTFEQWQADKELYTLIDVRED IEVVQGKIENALQIPLTRIRKEMSKLDKSKKYLLYCAVGVRGYIAERILKQNGFDAYNFV GGYRTYRDITDSEDSFELIGNQNLEQDKFVLDNKEKALSLDVCGLSCPGPIVKVSKKMED MNIGEILSVKATDPGFIRDIDSWCKNTGNTLISRNEYKGNYFASIQKGEKVETCSVNTCK EKTMIVFDGDLDKAIAAFIIATGSAAMGNKVNMFFTFWGLNILRKDEKVDVQKDIIGKMF SMMMPRGAKKLGLSKMNFLGIGSKMMRGVMAKKGISSLEELIIEAKKAGVKMTACQMSMD VMGITKEELIDGVEIGGVATMLNDNDNSNMNLFI >gi|289656127|gb|ADCS01000063.1| GENE 21 17881 - 18519 713 212 aa, chain + ## HITS:1 COG:CAC2627 KEGG:ns NR:ns ## COG: CAC2627 COG0220 # Protein_GI_number: 15895885 # Func_class: R General function prediction only # Function: Predicted S-adenosylmethionine-dependent methyltransferase # Organism: Clostridium acetobutylicum # 1 203 1 203 211 189 48.0 3e-48 MRLRKKHWAIPEMKENPYVYFDAAEYKGKWKEVFENSNKIHIEIGAGKGAFIQELARRNK NINYVIIEQESNAFVYATRKIIEEKLENVRALPINAEKINEYFDKEEIDRIYINFCNPWP KLRHQKRRLTHPRFLVQYREILKKDAEVHFKTDDLDLFNDSLKYFEDNKFKIMECTRNMK LEDYPENIVTEYENKWRSKNIPICYGVFRIEK >gi|289656127|gb|ADCS01000063.1| GENE 22 18653 - 19525 1052 290 aa, chain + ## HITS:1 COG:BH1573 KEGG:ns NR:ns ## COG: BH1573 COG1686 # Protein_GI_number: 15614136 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanyl-D-alanine carboxypeptidase # Organism: Bacillus halodurans # 37 270 34 256 382 131 34.0 2e-30 MKFKKVKVIIFLMVIVISAGLTLLYFCNNKLAKIDYNSKAICVMDADKNKIIFEKNANEK LKIASLTKLMTVLVAIEKNLDWEEISPVDVESYKNMVASNASMVGFYGRERVKVKDLLYG TMLASGGEAAMSLAIKSSGSLENFVIDMNEKAKELGLKETNFSNPVGMDEENNYSTARDM ALLLNEAIKNEEFKKIFTAKNYTTTETLDHPNGINIESTVLKEISDEDKTDFKILGGKSG TTKEAGLCWATLSKKGEKNYIIVVIGAPLDELRNPTMLQKEDTIKILEKI Prediction of potential genes in microbial genomes Time: Fri May 27 07:55:57 2011 Seq name: gi|289656126|gb|ADCS01000064.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.64, whole genome shotgun sequence Length of sequence - 1752 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 1677 1724 ## COG0550 Topoisomerase IA Predicted protein(s) >gi|289656126|gb|ADCS01000064.1| GENE 1 3 - 1677 1724 558 aa, chain - ## HITS:1 COG:SP1263_1 KEGG:ns NR:ns ## COG: SP1263_1 COG0550 # Protein_GI_number: 15901123 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Streptococcus pneumoniae TIGR4 # 4 548 15 553 553 573 54.0 1e-163 MAKNLVIVESPTKAKTIKKMLGSTYKVVASVGHIRDLPKSKLGIDVDNNFEPSYINIRGK GDIIKGLKKDAKEADHIYLATDPDREGEAISWHLSNILNLDSNSKNRVTFNEITKETVKR QIKNPRLIDMDLVNAQQARRVLDRLAGYKISPLLWKKIKSGLSAGRVQSVVLKAICDREQ EIEGFEAEEYWTIEAILKKGRSKISSKYYGAIENGKQIKREIKTEKESLDILNNIDKDNF IVEEKKSGVRKKSSSPPFTTSTMQQEASKKLNFSTKKTMIVAQSLYEGIDIPREGSVGLI TYMRTDSTRMSDEAQNSVLKFISDEYGDNYLYKNNAKVSKSNIQDAHECIRPTDVNRTPN LLKDSLSKDEFKLYSLIWKRFVASQMQPAIYDTMSLNIISNNEVFKSSGSQIKFDGFLRV YEFSTEKDDILPNLEVGDKLKCATVENIQHFTQPVARYNEATLIKFLEERAIGRPSTYAP IISTLLSRYYVVIEDKKILPTELGITVNEILCDNFSDLINEQFTANMEADLDKIADGELE WRNLIRNFYVKLEEDLKI Prediction of potential genes in microbial genomes Time: Fri May 27 07:55:58 2011 Seq name: gi|289656125|gb|ADCS01000065.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.65, whole genome shotgun sequence Length of sequence - 1517 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 24 - 1515 924 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs Predicted protein(s) >gi|289656125|gb|ADCS01000065.1| GENE 1 24 - 1515 924 497 aa, chain + ## HITS:1 COG:lin1623 KEGG:ns NR:ns ## COG: lin1623 COG1961 # Protein_GI_number: 16800691 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Listeria innocua # 5 299 6 301 301 324 56.0 2e-88 MRSYEKITALYERLSRDDELQGESNSIMNQKKILEEYAKKNHLENIVHFTDDGISGTQFD RPGFMAMMNGVNQGNIGCIIVKDMSRLGRDYLKVGQCMEILRQKGVRLIAINDNVDSFCK DDDFTPFRNIMNEWYARDTSRKIKSTFKAKGESGKHTGSSPPYGYIKDKDDKNQWIIDEK AAEVVRRIFHLTMDGKGPYAIARILEADKIDIPAYHQQKLGYGLHQSKVFEYPYRWCSFT IASILKKQEYLGHTVNFKTRKHFKDKKSKYVSEDNWLIFENTHEPIIDQETFDNVQRIRG NVKRYPDGWGEYHPLTGLMYCADCGSKMYVHRTSNYKNIPYYTCSAYTKVPCGTLCPSAH RIKAEVVLNLIQSTLQDIKKSLDEDNEAFLHSIQNEMEESEKIEMEKKRTRLTDSTNRLQ ELERLMCRIYEDMILEKIPNTRYEILNNQYETEQRELSKEIDGLEKAIKRYEKETNRAKK FIRLIERYDNFDELTPT Prediction of potential genes in microbial genomes Time: Fri May 27 07:55:59 2011 Seq name: gi|289656124|gb|ADCS01000066.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.66, whole genome shotgun sequence Length of sequence - 1244 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 1242 1755 ## Dhaf_4303 LPXTG-motif cell wall anchor domain protein Predicted protein(s) >gi|289656124|gb|ADCS01000066.1| GENE 1 3 - 1242 1755 413 aa, chain - ## HITS:1 COG:no KEGG:Dhaf_4303 NR:ns ## KEGG: Dhaf_4303 # Name: not_defined # Def: LPXTG-motif cell wall anchor domain protein # Organism: D.hafniense_DCB-2 # Pathway: not_defined # 5 191 1369 1537 2122 75 33.0 4e-12 EKTVEVINTSGGQGTVVEKTLEKVWVNGPKPTVTIELWRKNNVEGADKIDEKVDEFIVPA NANGNDLKKTFTNLAKHDPKGNEFEYYAKEENVPANYTKAIDGLKVTNTYNQPSNGEVTV TKEWQDPDGKTLVKPEVNLTLYRKIEGGAEEQVPVAEAEVKVVNGTTTTAKWENLKTTDI NGNAYSFIVKESFKNAGDVNNDNWTLITSTDVVNGAATIKNEALVSEADLGKLTVTKKPL VNGQGVRGPVGQRGTPLKFSFKVTGPAGYEESFELAATESKELKGLYFGEYKVEETDSKG YTATYSVTDGKVTLKAADKEKTVEVTNTSGGQGTVVEKTLEKVWVNGPKPTVTIELWRKN NVESADKIDEKVDEFIVPANASGNDLKKTFTNLAKHDPKGNEFEYYAKEENVP Prediction of potential genes in microbial genomes Time: Fri May 27 07:56:05 2011 Seq name: gi|289656123|gb|ADCS01000067.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.67, whole genome shotgun sequence Length of sequence - 1241 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 1241 1625 ## Dhaf_4303 LPXTG-motif cell wall anchor domain protein Predicted protein(s) >gi|289656123|gb|ADCS01000067.1| GENE 1 2 - 1241 1625 413 aa, chain - ## HITS:1 COG:no KEGG:Dhaf_4303 NR:ns ## KEGG: Dhaf_4303 # Name: not_defined # Def: LPXTG-motif cell wall anchor domain protein # Organism: D.hafniense_DCB-2 # Pathway: not_defined # 11 197 1369 1537 2122 66 31.0 2e-09 VKAADKEKTVEVTNTSGGQGTVVEKTLEKVWVNGPKPTVTIELWRKNNVESADKIDEKVD EFIVPANASGNDLKKTFTNLAKHDPKGNEFEYYAKEENVPVNYTKSENGLVVTNTYTQLS NGEVTVTKVWKDPDGKTLVKPEVNLTLYRKIEGGAEEQVPVAEAEVKVVSGTTTTAKWEN LKTTDINGNAYSFIVKESFKNADDVNNDNWTLVASTDVVNGAATITNKAVTGEENLGKLT VAKKLLETGNGVRGLRGTPIKFSFKVTGPANYEETFELAPGESKVLTGLYFGEYTVTETD TKGYTATYSVADGKVTLKAADKEKTVEVTNTSGGQGTVVEKTLEKVWVNGPKPTVTIELW RKNNVEGADKIDEKVDEFIVPANASGNDLKKTFTNLAKHDPKGNEFEYYAKEE Prediction of potential genes in microbial genomes Time: Fri May 27 07:56:10 2011 Seq name: gi|289656122|gb|ADCS01000068.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.68, whole genome shotgun sequence Length of sequence - 1233 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 1193 1458 ## PROTEIN SUPPORTED gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 Predicted protein(s) >gi|289656122|gb|ADCS01000068.1| GENE 1 3 - 1193 1458 396 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 [marine gamma proteobacterium HTCC2080] # 1 396 2 407 407 566 69 1e-162 AKAKFERTKPHVNIGTIGHVDHGKTTLTAAITLVLSKKFGGGEFVDYAHIDKAPEERERG ITISTSHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAADGPMPQTREHI LLARQVGVPQIVVFLNKEDQVDDPELIELVEMEVRDLLNEYDFDGDNTPIVVGSALKALE DPDGEWGEKVLKLMEEVDRYIPEPARDVDHPFLMPVEDVFSITGRGTVATGRVERGTVKV GDNVELVGLTEEKRTVVVTGVEMFKKQLDQAQAGDNIGALLRGVQRTEIERGQVLAAPNS IHPHTKFEAEVYVLSKEEGGRHTPFFNGYRPQFYFRTTDVTGDIQLAEGVEMVMPGDNST FTVTLITPIAMDEGLRFAIREGGRTVASGVVSKIIE Prediction of potential genes in microbial genomes Time: Fri May 27 07:56:11 2011 Seq name: gi|289656121|gb|ADCS01000069.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.69, whole genome shotgun sequence Length of sequence - 1129 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 611 767 ## COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases) - Prom 768 - 827 13.4 + Prom 664 - 723 9.3 2 2 Tu 1 . + CDS 771 - 1064 303 ## gi|299144566|ref|ZP_07037639.1| putative muropeptidase (autolysin) Predicted protein(s) >gi|289656121|gb|ADCS01000069.1| GENE 1 2 - 611 767 203 aa, chain - ## HITS:1 COG:BH2356 KEGG:ns NR:ns ## COG: BH2356 COG1974 # Protein_GI_number: 15614919 # Func_class: K Transcription; T Signal transduction mechanisms # Function: SOS-response transcriptional repressors (RecA-mediated autopeptidases) # Organism: Bacillus halodurans # 5 203 4 204 207 199 48.0 3e-51 MYEDLNQREKDILFFIKRFLESKGYPPTVREIGIKLNIKSTSTVHTSIERLENKGYLKKD PTKPRAIEIIDNNDDVLMIKKKTVDIPIVGSVTAGMPILAYDNIEDTCPLPIEFVRDKNL FILKVKGESMINVGIFDGDYVIIEKSEYAKNGDKVLALIGDESTIKTFYKEKDFYKLQPE NDFMEPIYVKELKILGKIIGLYR >gi|289656121|gb|ADCS01000069.1| GENE 2 771 - 1064 303 97 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299144566|ref|ZP_07037639.1| ## NR: gi|299144566|ref|ZP_07037639.1| putative muropeptidase (autolysin) [Peptoniphilus sp. oral taxon 386 str. F0131] # 12 97 12 97 97 138 100.0 1e-31 MKNKKIIINKIRCLFLLALMFIFTTAVKTVNLTSYLCQNNCKNVYYIVSENDNLWNIVDN YQYNYEKRDYIDKIIKLNNIDNQLKPGDIILIPDVLN Prediction of potential genes in microbial genomes Time: Fri May 27 07:56:17 2011 Seq name: gi|289656120|gb|ADCS01000070.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.70, whole genome shotgun sequence Length of sequence - 735 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + TRNA 33 - 109 83.2 # Met CAT 0 0 + TRNA 186 - 262 84.6 # Met CAT 0 0 + TRNA 271 - 345 77.8 # Glu TTC 0 0 + TRNA 354 - 429 90.1 # Val TAC 0 0 + TRNA 456 - 532 85.0 # Asp GTC 0 0 + TRNA 554 - 629 92.8 # Thr TGT 0 0 + TRNA 641 - 726 69.6 # Tyr GTA 0 0 Prediction of potential genes in microbial genomes Time: Fri May 27 07:56:18 2011 Seq name: gi|289656119|gb|ADCS01000071.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.71, whole genome shotgun sequence Length of sequence - 559 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 558 876 ## COG4932 Predicted outer membrane protein Predicted protein(s) >gi|289656119|gb|ADCS01000071.1| GENE 1 3 - 558 876 185 aa, chain - ## HITS:1 COG:L83620 KEGG:ns NR:ns ## COG: L83620 COG4932 # Protein_GI_number: 15672666 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted outer membrane protein # Organism: Lactococcus lactis # 5 100 241 332 336 58 39.0 8e-09 RTPGKVDVEGEKTWNDNNDQDGKRPTEIKINLMKKVGDGPVVKKETKTVTAADGWKWSWK GLPEYEGGKKITYSITEEAVADYTTQINGYNVTNSRTPGKVDVEGEKTWNDNNDQDGKRP TEIKINLMKKVGDGPVVKKETKTVTAADGWKWSWKGLPEYEGGKKITYSITEEAVADYTT QINGY Prediction of potential genes in microbial genomes Time: Fri May 27 07:56:19 2011 Seq name: gi|289656118|gb|ADCS01000072.1| Peptoniphilus sp. oral taxon 386 str. F0131 cont1.72, whole genome shotgun sequence Length of sequence - 544 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 42 - 542 741 ## COG0480 Translation elongation factors (GTPases) Predicted protein(s) >gi|289656118|gb|ADCS01000072.1| GENE 1 42 - 542 741 166 aa, chain - ## HITS:1 COG:FN1546 KEGG:ns NR:ns ## COG: FN1546 COG0480 # Protein_GI_number: 19704878 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factors (GTPases) # Organism: Fusobacterium nucleatum # 2 166 525 688 690 244 70.0 7e-65 FGGSVPKNYFPAVEKGIIESKEHGVLAGYPVTNFKAVLYDGSYHDVDSNEMSFKIAASLA FKKGMEEAKPTLLEPIMKVEVSIPDSYLGDVMGDMNKRRGRILGMDQQNDGTQLLIAEAP QAEMFEYSIDLRAMTQGRGTFAMEFVRYEEVPANIAQKIVEEAKNK